# --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-C2H2 PF00096.26 23 AEBP2-202 - 301 2.4e-07 30.8 8.2 1 4 4.3e-05 0.11 13.0 1.2 1 23 45 70 45 70 0.92 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 AEBP2-202 - 301 2.4e-07 30.8 8.2 2 4 9.6e-05 0.25 11.9 0.3 1 23 79 106 79 106 0.87 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 AEBP2-202 - 301 2.4e-07 30.8 8.2 3 4 0.0018 4.7 7.9 0.0 5 20 118 133 117 136 0.89 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 AEBP2-202 - 301 2.4e-07 30.8 8.2 4 4 7 1.8e+04 -3.6 0.0 15 20 198 203 197 204 0.83 Zinc finger, C2H2 type # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/AEBP2-202.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/AEBP2-202.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/AEBP2-202.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/AEBP2-202.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/AEBP2-202.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:53:12 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/AEBP2-203.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/AEBP2-203.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/AEBP2-203.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/AEBP2-203.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/AEBP2-203.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:53:12 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-C2H2 PF00096.26 23 AEBP2-204 - 517 9e-07 29.0 6.8 1 3 7.3e-05 0.22 12.1 1.2 1 23 261 286 261 286 0.91 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 AEBP2-204 - 517 9e-07 29.0 6.8 2 3 0.00016 0.49 11.0 0.3 1 23 295 322 295 322 0.86 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 AEBP2-204 - 517 9e-07 29.0 6.8 3 3 0.003 8.9 7.0 0.0 5 20 334 349 333 352 0.89 Zinc finger, C2H2 type # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/AEBP2-204.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/AEBP2-204.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/AEBP2-204.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/AEBP2-204.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/AEBP2-204.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:53:13 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/AEBP2-205.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/AEBP2-205.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/AEBP2-205.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/AEBP2-205.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/AEBP2-205.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:53:13 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/AEBP2-206.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/AEBP2-206.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/AEBP2-206.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/AEBP2-206.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/AEBP2-206.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:53:13 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-C2H2 PF00096.26 23 AEBP2-207 - 274 1.7e-07 31.3 8.2 1 4 3.8e-05 0.098 13.2 1.2 1 23 32 57 32 57 0.92 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 AEBP2-207 - 274 1.7e-07 31.3 8.2 2 4 8.5e-05 0.22 12.1 0.3 1 23 66 93 66 93 0.87 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 AEBP2-207 - 274 1.7e-07 31.3 8.2 3 4 0.0016 4.1 8.0 0.0 5 20 105 120 104 123 0.89 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 AEBP2-207 - 274 1.7e-07 31.3 8.2 4 4 7 1.8e+04 -3.5 0.0 15 20 185 190 184 191 0.83 Zinc finger, C2H2 type # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/AEBP2-207.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/AEBP2-207.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/AEBP2-207.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/AEBP2-207.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/AEBP2-207.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:53:14 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- bZIP_1 PF00170.21 64 ATF2-201 - 505 8.1e-13 48.3 6.5 1 1 3.6e-16 1.3e-12 47.6 6.5 5 62 354 411 350 413 0.95 bZIP transcription factor bZIP_2 PF07716.15 54 ATF2-201 - 505 5.4e-09 36.0 6.8 1 1 3.5e-12 1.2e-08 34.8 6.8 2 54 351 404 349 410 0.89 Basic region leucine zipper # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ATF2-201.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ATF2-201.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ATF2-201.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ATF2-201.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ATF2-201.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:53:14 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- bZIP_1 PF00170.21 64 ATF2-202 - 447 6.8e-13 48.5 6.5 1 1 1.8e-16 1.1e-12 47.9 6.5 5 62 296 353 292 355 0.95 bZIP transcription factor bZIP_2 PF07716.15 54 ATF2-202 - 447 4.5e-09 36.3 6.8 1 1 1.8e-12 1e-08 35.1 6.8 2 54 293 346 291 352 0.89 Basic region leucine zipper # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ATF2-202.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ATF2-202.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ATF2-202.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ATF2-202.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ATF2-202.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:53:14 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- bZIP_1 PF00170.21 64 ATF2-203 - 505 8.1e-13 48.3 6.5 1 1 3.6e-16 1.3e-12 47.6 6.5 5 62 354 411 350 413 0.95 bZIP transcription factor bZIP_2 PF07716.15 54 ATF2-203 - 505 5.4e-09 36.0 6.8 1 1 3.5e-12 1.2e-08 34.8 6.8 2 54 351 404 349 410 0.89 Basic region leucine zipper # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ATF2-203.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ATF2-203.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ATF2-203.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ATF2-203.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ATF2-203.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:53:15 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- bZIP_1 PF00170.21 64 ATF2-204 - 389 5.4e-13 48.8 6.5 1 1 2e-16 8.9e-13 48.1 6.5 5 62 238 295 234 297 0.95 bZIP transcription factor bZIP_2 PF07716.15 54 ATF2-204 - 389 5e-09 36.1 7.4 1 1 2.7e-12 1.2e-08 34.9 7.4 2 54 235 288 232 294 0.88 Basic region leucine zipper # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ATF2-204.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ATF2-204.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ATF2-204.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ATF2-204.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ATF2-204.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:53:15 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ATF2-205.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ATF2-205.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ATF2-205.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ATF2-205.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ATF2-205.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:53:15 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- bZIP_1 PF00170.21 64 ATF2-206 - 447 6.8e-13 48.5 6.5 1 1 1.8e-16 1.1e-12 47.9 6.5 5 62 296 353 292 355 0.95 bZIP transcription factor bZIP_2 PF07716.15 54 ATF2-206 - 447 4.5e-09 36.3 6.8 1 1 1.8e-12 1e-08 35.1 6.8 2 54 293 346 291 352 0.89 Basic region leucine zipper # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ATF2-206.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ATF2-206.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ATF2-206.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ATF2-206.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ATF2-206.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:53:16 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ATF2-207.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ATF2-207.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ATF2-207.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ATF2-207.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ATF2-207.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:53:16 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ATF2-208.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ATF2-208.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ATF2-208.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ATF2-208.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ATF2-208.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:53:16 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- bZIP_1 PF00170.21 64 ATF2-209 - 337 2.3e-08 34.0 3.7 1 1 4.2e-12 3.8e-08 33.3 3.7 5 45 296 336 292 337 0.94 bZIP transcription factor bZIP_2 PF07716.15 54 ATF2-209 - 337 1.7e-07 31.2 4.2 1 1 3.6e-11 3.3e-07 30.3 4.2 2 45 293 337 290 337 0.88 Basic region leucine zipper # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ATF2-209.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ATF2-209.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ATF2-209.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ATF2-209.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ATF2-209.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:53:17 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- bZIP_1 PF00170.21 64 ATF2-210 - 395 2.9e-08 33.7 3.7 1 1 1.1e-11 4.7e-08 33.0 3.7 5 45 354 394 350 395 0.94 bZIP transcription factor bZIP_2 PF07716.15 54 ATF2-210 - 395 1.2e-07 31.6 3.5 1 1 5.7e-11 2.6e-07 30.6 3.5 2 45 351 395 349 395 0.89 Basic region leucine zipper # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ATF2-210.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ATF2-210.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ATF2-210.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ATF2-210.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ATF2-210.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:53:17 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ATF2-211.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ATF2-211.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ATF2-211.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ATF2-211.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ATF2-211.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:53:17 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- bZIP_1 PF00170.21 64 ATF2-212 - 487 7.7e-13 48.3 6.5 1 1 2.8e-16 1.2e-12 47.7 6.5 5 62 336 393 332 395 0.95 bZIP transcription factor bZIP_2 PF07716.15 54 ATF2-212 - 487 5.2e-09 36.1 6.8 1 1 2.6e-12 1.2e-08 34.9 6.8 2 54 333 386 331 392 0.89 Basic region leucine zipper # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ATF2-212.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ATF2-212.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ATF2-212.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ATF2-212.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ATF2-212.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:53:18 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- bZIP_1 PF00170.21 64 ATF2-213 - 395 2.9e-08 33.7 3.7 1 1 1.1e-11 4.7e-08 33.0 3.7 5 45 354 394 350 395 0.94 bZIP transcription factor bZIP_2 PF07716.15 54 ATF2-213 - 395 1.2e-07 31.6 3.5 1 1 5.7e-11 2.6e-07 30.6 3.5 2 45 351 395 349 395 0.89 Basic region leucine zipper # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ATF2-213.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ATF2-213.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ATF2-213.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ATF2-213.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ATF2-213.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:53:18 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- bZIP_1 PF00170.21 64 ATF2-214 - 395 2.9e-08 33.7 3.7 1 1 1.1e-11 4.7e-08 33.0 3.7 5 45 354 394 350 395 0.94 bZIP transcription factor bZIP_2 PF07716.15 54 ATF2-214 - 395 1.2e-07 31.6 3.5 1 1 5.7e-11 2.6e-07 30.6 3.5 2 45 351 395 349 395 0.89 Basic region leucine zipper # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ATF2-214.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ATF2-214.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ATF2-214.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ATF2-214.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ATF2-214.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:53:18 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- bZIP_1 PF00170.21 64 ATF2-215 - 258 5.8e-09 35.9 3.5 1 1 2.4e-12 1.1e-08 35.1 3.5 5 46 176 217 172 227 0.91 bZIP transcription factor bZIP_2 PF07716.15 54 ATF2-215 - 258 6.5e-07 29.3 7.8 1 1 3e-10 1.3e-06 28.3 7.8 2 45 173 217 164 225 0.87 Basic region leucine zipper # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ATF2-215.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ATF2-215.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ATF2-215.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ATF2-215.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ATF2-215.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:53:19 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ATF2-216.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ATF2-216.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ATF2-216.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ATF2-216.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ATF2-216.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:53:19 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ATF2-217.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ATF2-217.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ATF2-217.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ATF2-217.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ATF2-217.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:53:19 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ATF2-218.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ATF2-218.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ATF2-218.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ATF2-218.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ATF2-218.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:53:20 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- bZIP_1 PF00170.21 64 ATF2-219 - 337 2.3e-08 34.0 3.7 1 1 4.2e-12 3.8e-08 33.3 3.7 5 45 296 336 292 337 0.94 bZIP transcription factor bZIP_2 PF07716.15 54 ATF2-219 - 337 1.7e-07 31.2 4.2 1 1 3.6e-11 3.3e-07 30.3 4.2 2 45 293 337 290 337 0.88 Basic region leucine zipper # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ATF2-219.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ATF2-219.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ATF2-219.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ATF2-219.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ATF2-219.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:53:20 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ATF2-220.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ATF2-220.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ATF2-220.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ATF2-220.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ATF2-220.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:53:20 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- bZIP_1 PF00170.21 64 ATF2-221 - 279 3.3e-13 49.5 6.5 1 1 1.2e-16 5.2e-13 48.9 6.5 5 62 128 185 124 187 0.95 bZIP transcription factor bZIP_2 PF07716.15 54 ATF2-221 - 279 9.3e-09 35.2 7.8 1 1 2.1e-12 9.3e-09 35.2 7.8 2 54 125 178 122 184 0.88 Basic region leucine zipper # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ATF2-221.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ATF2-221.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ATF2-221.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ATF2-221.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ATF2-221.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:53:21 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-C2H2 PF00096.26 23 BCL11A-201 - 801 3.2e-27 93.4 55.5 1 7 1.5 1.3e+03 0.2 0.1 2 11 47 56 46 56 0.87 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 BCL11A-201 - 801 3.2e-27 93.4 55.5 2 7 0.00019 0.17 12.4 0.6 1 23 136 159 136 159 0.95 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 BCL11A-201 - 801 3.2e-27 93.4 55.5 3 7 6.6e-08 5.7e-05 23.4 1.5 3 23 345 365 344 365 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 BCL11A-201 - 801 3.2e-27 93.4 55.5 4 7 2.5e-06 0.0021 18.4 5.6 1 23 371 393 371 393 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 BCL11A-201 - 801 3.2e-27 93.4 55.5 5 7 5.5e-09 4.7e-06 26.8 2.8 2 23 709 730 708 730 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 BCL11A-201 - 801 3.2e-27 93.4 55.5 6 7 9.5e-07 0.00081 19.7 3.3 1 23 736 758 736 758 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 BCL11A-201 - 801 3.2e-27 93.4 55.5 7 7 1.2e-07 0.0001 22.5 1.0 1 23 766 789 766 789 0.98 Zinc finger, C2H2 type zf-H2C2_2 PF13465.6 26 BCL11A-201 - 801 2e-17 62.8 50.0 1 8 0.49 4.2e+02 1.7 0.3 11 22 132 143 124 147 0.66 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 BCL11A-201 - 801 2e-17 62.8 50.0 2 8 0.03 25 5.5 1.6 16 25 344 353 336 354 0.83 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 BCL11A-201 - 801 2e-17 62.8 50.0 3 8 3.9e-09 3.4e-06 27.2 2.4 1 24 357 380 357 382 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 BCL11A-201 - 801 2e-17 62.8 50.0 4 8 0.089 76 4.0 1.4 2 10 386 394 385 402 0.83 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 BCL11A-201 - 801 2e-17 62.8 50.0 5 8 0.0056 4.8 7.8 0.0 16 26 709 719 686 719 0.85 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 BCL11A-201 - 801 2e-17 62.8 50.0 6 8 3.1e-10 2.6e-07 30.7 1.3 1 24 722 745 722 747 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 BCL11A-201 - 801 2e-17 62.8 50.0 7 8 5.2e-05 0.044 14.2 0.5 2 21 751 772 750 776 0.87 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 BCL11A-201 - 801 2e-17 62.8 50.0 8 8 0.91 7.7e+02 0.8 0.3 2 9 781 789 780 792 0.86 Zinc-finger double domain zf-C2H2_4 PF13894.6 24 BCL11A-201 - 801 6.2e-16 57.7 52.1 1 7 2.8 2.4e+03 -0.1 0.0 2 11 47 56 46 68 0.88 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 BCL11A-201 - 801 6.2e-16 57.7 52.1 2 7 0.0024 2 9.5 0.7 1 24 136 159 136 159 0.91 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 BCL11A-201 - 801 6.2e-16 57.7 52.1 3 7 5.2e-05 0.044 14.6 1.7 2 23 344 365 343 366 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 BCL11A-201 - 801 6.2e-16 57.7 52.1 4 7 0.00075 0.64 11.0 4.3 1 23 371 393 371 394 0.91 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 BCL11A-201 - 801 6.2e-16 57.7 52.1 5 7 6.4e-06 0.0054 17.5 2.8 2 23 709 730 709 731 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 BCL11A-201 - 801 6.2e-16 57.7 52.1 6 7 5.1e-05 0.044 14.6 2.0 1 23 736 758 736 759 0.87 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 BCL11A-201 - 801 6.2e-16 57.7 52.1 7 7 1.8e-06 0.0015 19.2 1.3 1 24 766 789 766 789 0.96 C2H2-type zinc finger # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/BCL11A-201.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/BCL11A-201.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/BCL11A-201.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/BCL11A-201.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/BCL11A-201.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:53:21 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-C2H2 PF00096.26 23 BCL11A-202 - 773 3.4e-11 43.0 25.8 1 4 1.6 1.2e+03 0.2 0.1 2 11 47 56 46 56 0.87 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 BCL11A-202 - 773 3.4e-11 43.0 25.8 2 4 0.0002 0.16 12.5 0.6 1 23 170 193 170 193 0.95 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 BCL11A-202 - 773 3.4e-11 43.0 25.8 3 4 7e-08 5.4e-05 23.4 1.5 3 23 379 399 378 399 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 BCL11A-202 - 773 3.4e-11 43.0 25.8 4 4 2.6e-06 0.002 18.5 5.6 1 23 405 427 405 427 0.99 Zinc finger, C2H2 type # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/BCL11A-202.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/BCL11A-202.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/BCL11A-202.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/BCL11A-202.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/BCL11A-202.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:53:21 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-C2H2 PF00096.26 23 BCL11A-203 - 793 7.2e-22 76.6 47.5 1 6 1.7 1.3e+03 0.2 0.1 2 11 47 56 46 56 0.87 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 BCL11A-203 - 793 7.2e-22 76.6 47.5 2 6 0.00022 0.16 12.5 0.6 1 23 136 159 136 159 0.95 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 BCL11A-203 - 793 7.2e-22 76.6 47.5 3 6 7.5e-08 5.6e-05 23.4 1.5 3 23 345 365 344 365 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 BCL11A-203 - 793 7.2e-22 76.6 47.5 4 6 2.8e-06 0.0021 18.4 5.6 1 23 371 393 371 393 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 BCL11A-203 - 793 7.2e-22 76.6 47.5 5 6 6.3e-09 4.7e-06 26.8 2.8 2 23 709 730 708 730 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 BCL11A-203 - 793 7.2e-22 76.6 47.5 6 6 1.1e-06 0.0008 19.7 3.3 1 23 736 758 736 758 0.99 Zinc finger, C2H2 type zf-H2C2_2 PF13465.6 26 BCL11A-203 - 793 2.2e-15 56.3 43.0 1 7 0.55 4.1e+02 1.7 0.3 11 22 132 143 124 147 0.66 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 BCL11A-203 - 793 2.2e-15 56.3 43.0 2 7 0.033 25 5.5 1.6 16 25 344 353 336 354 0.83 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 BCL11A-203 - 793 2.2e-15 56.3 43.0 3 7 4.5e-09 3.3e-06 27.3 2.4 1 24 357 380 357 382 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 BCL11A-203 - 793 2.2e-15 56.3 43.0 4 7 0.1 75 4.0 1.4 2 10 386 394 385 402 0.83 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 BCL11A-203 - 793 2.2e-15 56.3 43.0 5 7 0.0063 4.7 7.8 0.0 16 26 709 719 686 719 0.85 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 BCL11A-203 - 793 2.2e-15 56.3 43.0 6 7 3.5e-10 2.6e-07 30.8 1.3 1 24 722 745 722 747 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 BCL11A-203 - 793 2.2e-15 56.3 43.0 7 7 0.12 91 3.8 0.3 2 9 751 758 750 767 0.87 Zinc-finger double domain zf-C2H2_4 PF13894.6 24 BCL11A-203 - 793 1.1e-11 44.5 43.5 1 6 3.1 2.3e+03 -0.1 0.0 2 11 47 56 46 68 0.88 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 BCL11A-203 - 793 1.1e-11 44.5 43.5 2 6 0.0027 2 9.5 0.7 1 24 136 159 136 159 0.91 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 BCL11A-203 - 793 1.1e-11 44.5 43.5 3 6 5.9e-05 0.044 14.6 1.7 2 23 344 365 343 366 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 BCL11A-203 - 793 1.1e-11 44.5 43.5 4 6 0.00085 0.63 11.0 4.3 1 23 371 393 371 394 0.91 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 BCL11A-203 - 793 1.1e-11 44.5 43.5 5 6 7.2e-06 0.0054 17.5 2.8 2 23 709 730 709 731 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 BCL11A-203 - 793 1.1e-11 44.5 43.5 6 6 5.8e-05 0.043 14.7 2.0 1 23 736 758 736 759 0.87 C2H2-type zinc finger # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/BCL11A-203.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/BCL11A-203.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/BCL11A-203.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/BCL11A-203.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/BCL11A-203.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:53:22 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/BCL11A-204.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/BCL11A-204.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/BCL11A-204.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/BCL11A-204.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/BCL11A-204.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:53:22 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/BCL11A-205.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/BCL11A-205.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/BCL11A-205.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/BCL11A-205.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/BCL11A-205.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:53:22 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-C2H2 PF00096.26 23 BCL11A-206 - 683 2.6e-28 96.9 51.3 1 6 0.00018 0.14 12.7 0.6 1 23 18 41 18 41 0.95 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 BCL11A-206 - 683 2.6e-28 96.9 51.3 2 6 6e-08 4.7e-05 23.6 1.5 3 23 227 247 226 247 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 BCL11A-206 - 683 2.6e-28 96.9 51.3 3 6 2.2e-06 0.0017 18.7 5.6 1 23 253 275 253 275 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 BCL11A-206 - 683 2.6e-28 96.9 51.3 4 6 5e-09 3.9e-06 27.0 2.8 2 23 591 612 590 612 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 BCL11A-206 - 683 2.6e-28 96.9 51.3 5 6 8.7e-07 0.00068 20.0 3.3 1 23 618 640 618 640 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 BCL11A-206 - 683 2.6e-28 96.9 51.3 6 6 1.1e-07 8.6e-05 22.8 1.0 1 23 648 671 648 671 0.98 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 BCL11A-206 - 683 1.2e-16 59.9 49.3 1 6 0.0021 1.7 9.7 0.7 1 24 18 41 18 41 0.91 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 BCL11A-206 - 683 1.2e-16 59.9 49.3 2 6 4.7e-05 0.037 14.9 1.7 2 23 226 247 225 248 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 BCL11A-206 - 683 1.2e-16 59.9 49.3 3 6 0.00068 0.53 11.3 4.3 1 23 253 275 253 276 0.91 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 BCL11A-206 - 683 1.2e-16 59.9 49.3 4 6 5.8e-06 0.0045 17.7 2.8 2 23 591 612 591 613 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 BCL11A-206 - 683 1.2e-16 59.9 49.3 5 6 4.7e-05 0.036 14.9 2.0 1 23 618 640 618 641 0.87 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 BCL11A-206 - 683 1.2e-16 59.9 49.3 6 6 1.6e-06 0.0013 19.4 1.3 1 24 648 671 648 671 0.96 C2H2-type zinc finger zf-H2C2_2 PF13465.6 26 BCL11A-206 - 683 6.8e-16 57.9 55.4 1 8 1.2 9.3e+02 0.6 0.5 13 22 16 25 11 29 0.74 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 BCL11A-206 - 683 6.8e-16 57.9 55.4 2 8 0.027 21 5.7 1.6 16 25 226 235 218 236 0.83 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 BCL11A-206 - 683 6.8e-16 57.9 55.4 3 8 3.6e-09 2.8e-06 27.5 2.4 1 24 239 262 239 264 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 BCL11A-206 - 683 6.8e-16 57.9 55.4 4 8 0.082 64 4.2 1.4 2 10 268 276 267 284 0.83 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 BCL11A-206 - 683 6.8e-16 57.9 55.4 5 8 0.0051 4 8.0 0.0 16 26 591 601 568 601 0.85 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 BCL11A-206 - 683 6.8e-16 57.9 55.4 6 8 2.8e-10 2.2e-07 31.0 1.3 1 24 604 627 604 629 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 BCL11A-206 - 683 6.8e-16 57.9 55.4 7 8 4.7e-05 0.037 14.5 0.5 2 21 633 654 632 658 0.87 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 BCL11A-206 - 683 6.8e-16 57.9 55.4 8 8 0.83 6.5e+02 1.0 0.3 2 9 663 671 662 674 0.86 Zinc-finger double domain # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/BCL11A-206.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/BCL11A-206.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/BCL11A-206.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/BCL11A-206.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/BCL11A-206.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:53:23 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/BCL11A-207.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/BCL11A-207.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/BCL11A-207.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/BCL11A-207.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/BCL11A-207.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:53:23 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/BCL11A-208.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/BCL11A-208.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/BCL11A-208.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/BCL11A-208.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/BCL11A-208.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:53:23 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/BCL11A-209.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/BCL11A-209.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/BCL11A-209.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/BCL11A-209.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/BCL11A-209.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:53:24 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/BCL11A-210.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/BCL11A-210.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/BCL11A-210.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/BCL11A-210.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/BCL11A-210.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:53:24 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-C2H2 PF00096.26 23 BCL11A-211 - 442 1.3e-07 31.6 16.7 1 3 9.6e-05 0.082 13.4 0.6 1 23 18 41 18 41 0.95 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 BCL11A-211 - 442 1.3e-07 31.6 16.7 2 3 0.046 39 5.0 0.1 13 23 58 68 54 68 0.89 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 BCL11A-211 - 442 1.3e-07 31.6 16.7 3 3 1.2e-06 0.001 19.4 5.6 1 23 74 96 74 96 0.99 Zinc finger, C2H2 type # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/BCL11A-211.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/BCL11A-211.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/BCL11A-211.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/BCL11A-211.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/BCL11A-211.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:53:24 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/BCL11A-212.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/BCL11A-212.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/BCL11A-212.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/BCL11A-212.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/BCL11A-212.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:53:25 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-C2H2 PF00096.26 23 BCL11A-213 - 835 4.5e-27 93.0 55.5 1 7 1.6 1.3e+03 0.1 0.1 2 11 47 56 46 56 0.87 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 BCL11A-213 - 835 4.5e-27 93.0 55.5 2 7 0.0002 0.17 12.4 0.6 1 23 170 193 170 193 0.95 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 BCL11A-213 - 835 4.5e-27 93.0 55.5 3 7 7e-08 5.9e-05 23.3 1.5 3 23 379 399 378 399 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 BCL11A-213 - 835 4.5e-27 93.0 55.5 4 7 2.6e-06 0.0022 18.3 5.6 1 23 405 427 405 427 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 BCL11A-213 - 835 4.5e-27 93.0 55.5 5 7 5.8e-09 5e-06 26.7 2.8 2 23 743 764 742 764 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 BCL11A-213 - 835 4.5e-27 93.0 55.5 6 7 1e-06 0.00085 19.6 3.3 1 23 770 792 770 792 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 BCL11A-213 - 835 4.5e-27 93.0 55.5 7 7 1.3e-07 0.00011 22.5 1.0 1 23 800 823 800 823 0.98 Zinc finger, C2H2 type zf-H2C2_2 PF13465.6 26 BCL11A-213 - 835 1.2e-16 60.3 50.9 1 8 1.4 1.2e+03 0.3 0.5 13 22 168 177 163 181 0.74 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 BCL11A-213 - 835 1.2e-16 60.3 50.9 2 8 0.031 26 5.4 1.6 16 25 378 387 370 388 0.83 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 BCL11A-213 - 835 1.2e-16 60.3 50.9 3 8 4.1e-09 3.5e-06 27.2 2.4 1 24 391 414 391 416 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 BCL11A-213 - 835 1.2e-16 60.3 50.9 4 8 0.093 80 3.9 1.4 2 10 420 428 419 436 0.83 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 BCL11A-213 - 835 1.2e-16 60.3 50.9 5 8 0.0058 5 7.7 0.0 16 26 743 753 720 753 0.85 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 BCL11A-213 - 835 1.2e-16 60.3 50.9 6 8 3.2e-10 2.8e-07 30.7 1.3 1 24 756 779 756 781 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 BCL11A-213 - 835 1.2e-16 60.3 50.9 7 8 5.4e-05 0.046 14.2 0.5 2 21 785 806 784 810 0.87 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 BCL11A-213 - 835 1.2e-16 60.3 50.9 8 8 0.95 8.1e+02 0.7 0.3 2 9 815 823 814 826 0.86 Zinc-finger double domain zf-C2H2_4 PF13894.6 24 BCL11A-213 - 835 8.5e-16 57.3 52.1 1 7 2.9 2.5e+03 -0.2 0.0 2 11 47 56 46 68 0.88 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 BCL11A-213 - 835 8.5e-16 57.3 52.1 2 7 0.0025 2.1 9.4 0.7 1 24 170 193 170 193 0.91 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 BCL11A-213 - 835 8.5e-16 57.3 52.1 3 7 5.5e-05 0.047 14.6 1.7 2 23 378 399 377 400 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 BCL11A-213 - 835 8.5e-16 57.3 52.1 4 7 0.00079 0.67 10.9 4.3 1 23 405 427 405 428 0.91 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 BCL11A-213 - 835 8.5e-16 57.3 52.1 5 7 6.7e-06 0.0057 17.4 2.8 2 23 743 764 743 765 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 BCL11A-213 - 835 8.5e-16 57.3 52.1 6 7 5.4e-05 0.046 14.6 2.0 1 23 770 792 770 793 0.87 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 BCL11A-213 - 835 8.5e-16 57.3 52.1 7 7 1.9e-06 0.0016 19.1 1.3 1 24 800 823 800 823 0.96 C2H2-type zinc finger # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/BCL11A-213.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/BCL11A-213.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/BCL11A-213.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/BCL11A-213.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/BCL11A-213.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:53:25 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/BCL11A-214.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/BCL11A-214.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/BCL11A-214.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/BCL11A-214.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/BCL11A-214.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:53:26 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/BCL11A-215.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/BCL11A-215.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/BCL11A-215.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/BCL11A-215.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/BCL11A-215.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:53:26 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/BCL11A-216.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/BCL11A-216.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/BCL11A-216.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/BCL11A-216.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/BCL11A-216.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:53:26 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/BCL11A-217.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/BCL11A-217.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/BCL11A-217.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/BCL11A-217.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/BCL11A-217.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:53:27 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/BCL11A-218.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/BCL11A-218.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/BCL11A-218.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/BCL11A-218.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/BCL11A-218.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:53:27 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/BCL11A-219.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/BCL11A-219.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/BCL11A-219.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/BCL11A-219.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/BCL11A-219.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:53:27 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/BCL11A-220.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/BCL11A-220.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/BCL11A-220.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/BCL11A-220.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/BCL11A-220.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:53:28 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/BCL11A-221.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/BCL11A-221.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/BCL11A-221.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/BCL11A-221.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/BCL11A-221.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:53:28 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/BCL11A-222.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/BCL11A-222.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/BCL11A-222.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/BCL11A-222.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/BCL11A-222.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:53:28 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/BCL11A-223.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/BCL11A-223.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/BCL11A-223.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/BCL11A-223.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/BCL11A-223.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:53:29 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/BCL11A-224.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/BCL11A-224.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/BCL11A-224.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/BCL11A-224.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/BCL11A-224.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:53:29 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/BCL11A-225.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/BCL11A-225.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/BCL11A-225.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/BCL11A-225.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/BCL11A-225.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:53:29 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/BCL11A-226.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/BCL11A-226.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/BCL11A-226.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/BCL11A-226.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/BCL11A-226.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:53:30 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/BCL11A-227.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/BCL11A-227.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/BCL11A-227.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/BCL11A-227.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/BCL11A-227.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:53:31 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-C2H2 PF00096.26 23 BCL11B-201 - 823 3.1e-26 90.3 53.8 1 7 0.82 1.3e+03 0.1 0.1 2 11 57 66 56 66 0.87 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 BCL11B-201 - 823 3.1e-26 90.3 53.8 2 7 0.00052 0.84 10.2 0.3 1 23 150 173 150 173 0.94 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 BCL11B-201 - 823 3.1e-26 90.3 53.8 3 7 4.4e-08 7.2e-05 23.0 1.4 3 23 358 378 357 378 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 BCL11B-201 - 823 3.1e-26 90.3 53.8 4 7 2.3e-06 0.0038 17.6 5.5 1 23 384 406 384 406 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 BCL11B-201 - 823 3.1e-26 90.3 53.8 5 7 3e-09 4.9e-06 26.7 2.8 2 23 726 747 725 747 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 BCL11B-201 - 823 3.1e-26 90.3 53.8 6 7 5.1e-07 0.00084 19.7 3.3 1 23 753 775 753 775 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 BCL11B-201 - 823 3.1e-26 90.3 53.8 7 7 9.3e-08 0.00015 22.0 0.8 1 23 783 806 783 806 0.98 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 BCL11B-201 - 823 2e-16 59.2 50.4 1 7 1.5 2.4e+03 -0.1 0.0 2 11 57 66 56 78 0.87 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 BCL11B-201 - 823 2e-16 59.2 50.4 2 7 0.0012 1.9 9.6 0.4 1 24 150 173 150 173 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 BCL11B-201 - 823 2e-16 59.2 50.4 3 7 2e-05 0.033 15.0 1.4 2 23 357 378 356 379 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 BCL11B-201 - 823 2e-16 59.2 50.4 4 7 0.00027 0.44 11.5 4.6 1 23 384 406 384 407 0.91 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 BCL11B-201 - 823 2e-16 59.2 50.4 5 7 3.4e-06 0.0056 17.4 2.8 2 23 726 747 726 748 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 BCL11B-201 - 823 2e-16 59.2 50.4 6 7 2.8e-05 0.045 14.6 2.0 1 23 753 775 753 776 0.87 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 BCL11B-201 - 823 2e-16 59.2 50.4 7 7 1.1e-06 0.0018 18.9 0.9 1 24 783 806 783 806 0.96 C2H2-type zinc finger zf-H2C2_2 PF13465.6 26 BCL11B-201 - 823 5.4e-15 55.0 47.4 1 8 6.7 1.1e+04 -2.8 0.0 12 24 51 65 50 65 0.71 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 BCL11B-201 - 823 5.4e-15 55.0 47.4 2 8 0.017 28 5.4 1.4 16 25 357 366 346 367 0.89 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 BCL11B-201 - 823 5.4e-15 55.0 47.4 3 8 5.7e-09 9.3e-06 25.8 1.9 1 23 370 392 370 395 0.88 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 BCL11B-201 - 823 5.4e-15 55.0 47.4 4 8 0.1 1.7e+02 2.9 1.9 2 10 399 407 398 411 0.88 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 BCL11B-201 - 823 5.4e-15 55.0 47.4 5 8 0.003 4.9 7.8 0.0 16 26 726 736 703 736 0.85 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 BCL11B-201 - 823 5.4e-15 55.0 47.4 6 8 1.7e-10 2.7e-07 30.7 1.3 1 24 739 762 739 764 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 BCL11B-201 - 823 5.4e-15 55.0 47.4 7 8 0.00031 0.5 10.9 0.3 2 20 768 788 767 792 0.86 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 BCL11B-201 - 823 5.4e-15 55.0 47.4 8 8 0.76 1.2e+03 0.2 0.8 2 9 798 806 797 810 0.83 Zinc-finger double domain # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/BCL11B-201.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/BCL11B-201.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/BCL11B-201.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/BCL11B-201.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/BCL11B-201.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:53:31 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-C2H2 PF00096.26 23 BCL11B-202 - 894 5.8e-26 89.5 53.8 1 7 0.89 1.5e+03 0.0 0.1 2 11 57 66 56 66 0.87 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 BCL11B-202 - 894 5.8e-26 89.5 53.8 2 7 0.00057 0.93 10.1 0.3 1 23 221 244 221 244 0.94 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 BCL11B-202 - 894 5.8e-26 89.5 53.8 3 7 4.8e-08 7.9e-05 22.9 1.4 3 23 429 449 428 449 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 BCL11B-202 - 894 5.8e-26 89.5 53.8 4 7 2.6e-06 0.0042 17.5 5.5 1 23 455 477 455 477 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 BCL11B-202 - 894 5.8e-26 89.5 53.8 5 7 3.3e-09 5.4e-06 26.6 2.8 2 23 797 818 796 818 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 BCL11B-202 - 894 5.8e-26 89.5 53.8 6 7 5.7e-07 0.00092 19.5 3.3 1 23 824 846 824 846 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 BCL11B-202 - 894 5.8e-26 89.5 53.8 7 7 1e-07 0.00017 21.9 0.8 1 23 854 877 854 877 0.98 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 BCL11B-202 - 894 3.5e-16 58.5 50.4 1 7 1.7 2.8e+03 -0.3 0.0 2 11 57 66 56 77 0.88 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 BCL11B-202 - 894 3.5e-16 58.5 50.4 2 7 0.0013 2.1 9.4 0.4 1 24 221 244 221 244 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 BCL11B-202 - 894 3.5e-16 58.5 50.4 3 7 2.2e-05 0.036 14.9 1.4 2 23 428 449 427 450 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 BCL11B-202 - 894 3.5e-16 58.5 50.4 4 7 0.0003 0.48 11.4 4.6 1 23 455 477 455 478 0.91 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 BCL11B-202 - 894 3.5e-16 58.5 50.4 5 7 3.8e-06 0.0062 17.3 2.8 2 23 797 818 797 819 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 BCL11B-202 - 894 3.5e-16 58.5 50.4 6 7 3e-05 0.05 14.5 2.0 1 23 824 846 824 847 0.87 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 BCL11B-202 - 894 3.5e-16 58.5 50.4 7 7 1.2e-06 0.002 18.8 0.9 1 24 854 877 854 877 0.96 C2H2-type zinc finger zf-H2C2_2 PF13465.6 26 BCL11B-202 - 894 1.1e-14 54.1 47.5 1 8 7.3 1.2e+04 -3.0 0.0 12 24 51 65 50 65 0.71 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 BCL11B-202 - 894 1.1e-14 54.1 47.5 2 8 0.019 31 5.2 1.4 16 25 428 437 417 438 0.89 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 BCL11B-202 - 894 1.1e-14 54.1 47.5 3 8 6.3e-09 1e-05 25.7 1.9 1 23 441 463 441 466 0.88 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 BCL11B-202 - 894 1.1e-14 54.1 47.5 4 8 0.11 1.8e+02 2.8 1.9 2 10 470 478 469 482 0.88 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 BCL11B-202 - 894 1.1e-14 54.1 47.5 5 8 0.0033 5.4 7.6 0.0 16 26 797 807 774 807 0.85 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 BCL11B-202 - 894 1.1e-14 54.1 47.5 6 8 1.8e-10 3e-07 30.6 1.3 1 24 810 833 810 835 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 BCL11B-202 - 894 1.1e-14 54.1 47.5 7 8 0.00034 0.55 10.8 0.3 2 20 839 859 838 863 0.86 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 BCL11B-202 - 894 1.1e-14 54.1 47.5 8 8 0.89 1.5e+03 -0.1 0.9 2 9 869 877 868 880 0.83 Zinc-finger double domain # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/BCL11B-202.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/BCL11B-202.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/BCL11B-202.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/BCL11B-202.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/BCL11B-202.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:53:32 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-C2H2 PF00096.26 23 BCL11B-203 - 700 2.4e-27 93.8 49.6 1 6 0.00043 0.7 10.5 0.3 1 23 27 50 27 50 0.94 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 BCL11B-203 - 700 2.4e-27 93.8 49.6 2 6 3.6e-08 5.9e-05 23.3 1.4 3 23 235 255 234 255 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 BCL11B-203 - 700 2.4e-27 93.8 49.6 3 6 1.9e-06 0.0031 17.9 5.5 1 23 261 283 261 283 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 BCL11B-203 - 700 2.4e-27 93.8 49.6 4 6 2.5e-09 4e-06 27.0 2.8 2 23 603 624 602 624 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 BCL11B-203 - 700 2.4e-27 93.8 49.6 5 6 4.3e-07 0.0007 19.9 3.3 1 23 630 652 630 652 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 BCL11B-203 - 700 2.4e-27 93.8 49.6 6 6 7.7e-08 0.00013 22.3 0.8 1 23 660 683 660 683 0.98 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 BCL11B-203 - 700 3.6e-17 61.6 47.5 1 6 0.00096 1.6 9.8 0.4 1 24 27 50 27 50 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 BCL11B-203 - 700 3.6e-17 61.6 47.5 2 6 1.7e-05 0.027 15.3 1.4 2 23 234 255 233 256 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 BCL11B-203 - 700 3.6e-17 61.6 47.5 3 6 0.00022 0.36 11.8 4.6 1 23 261 283 261 284 0.91 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 BCL11B-203 - 700 3.6e-17 61.6 47.5 4 6 2.8e-06 0.0046 17.7 2.8 2 23 603 624 603 625 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 BCL11B-203 - 700 3.6e-17 61.6 47.5 5 6 2.3e-05 0.037 14.9 2.0 1 23 630 652 630 653 0.87 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 BCL11B-203 - 700 3.6e-17 61.6 47.5 6 6 9.3e-07 0.0015 19.2 0.9 1 24 660 683 660 683 0.96 C2H2-type zinc finger zf-H2C2_2 PF13465.6 26 BCL11B-203 - 700 3.1e-16 59.0 44.6 1 7 0.014 24 5.6 1.4 16 25 234 243 223 244 0.89 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 BCL11B-203 - 700 3.1e-16 59.0 44.6 2 7 4.7e-09 7.7e-06 26.1 1.9 1 23 247 269 247 272 0.88 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 BCL11B-203 - 700 3.1e-16 59.0 44.6 3 7 0.086 1.4e+02 3.2 1.9 2 10 276 284 275 288 0.88 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 BCL11B-203 - 700 3.1e-16 59.0 44.6 4 7 0.0025 4.1 8.0 0.0 16 26 603 613 580 613 0.85 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 BCL11B-203 - 700 3.1e-16 59.0 44.6 5 7 1.4e-10 2.3e-07 31.0 1.3 1 24 616 639 616 641 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 BCL11B-203 - 700 3.1e-16 59.0 44.6 6 7 0.00025 0.41 11.2 0.3 2 20 645 665 644 669 0.86 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 BCL11B-203 - 700 3.1e-16 59.0 44.6 7 7 0.64 1e+03 0.4 0.8 2 9 675 683 674 687 0.83 Zinc-finger double domain # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/BCL11B-203.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/BCL11B-203.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/BCL11B-203.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/BCL11B-203.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/BCL11B-203.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:53:32 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- BTB PF00651.31 111 BCL6-201 - 706 8.5e-28 96.8 0.2 1 1 1.1e-30 1.4e-27 96.1 0.2 1 110 22 128 22 129 0.95 BTB/POZ domain zf-H2C2_2 PF13465.6 26 BCL6-201 - 706 1.3e-22 79.1 55.5 1 7 7.3 8.7e+03 -2.5 0.4 16 21 474 479 464 481 0.72 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 BCL6-201 - 706 1.3e-22 79.1 55.5 2 7 8.8e-05 0.11 13.0 1.4 1 24 532 555 532 557 0.89 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 BCL6-201 - 706 1.3e-22 79.1 55.5 3 7 2.9e-08 3.5e-05 24.0 0.2 1 25 560 584 560 585 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 BCL6-201 - 706 1.3e-22 79.1 55.5 4 7 6.9e-10 8.3e-07 29.2 0.5 1 25 588 612 588 613 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 BCL6-201 - 706 1.3e-22 79.1 55.5 5 7 2.7e-08 3.3e-05 24.1 1.4 1 26 616 641 616 641 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 BCL6-201 - 706 1.3e-22 79.1 55.5 6 7 2.8e-09 3.4e-06 27.2 4.2 2 25 645 668 644 669 0.90 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 BCL6-201 - 706 1.3e-22 79.1 55.5 7 7 8.4 1e+04 -2.7 0.5 2 9 673 681 672 682 0.78 Zinc-finger double domain zf-C2H2 PF00096.26 23 BCL6-201 - 706 3e-20 71.5 53.3 1 7 9.9 1.2e+04 -2.8 1.1 2 19 474 491 474 493 0.75 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 BCL6-201 - 706 3e-20 71.5 53.3 2 7 0.0004 0.48 11.0 2.6 1 23 518 541 518 541 0.93 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 BCL6-201 - 706 3e-20 71.5 53.3 3 7 1.2e-05 0.014 15.8 1.1 1 23 546 568 546 568 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 BCL6-201 - 706 3e-20 71.5 53.3 4 7 3.1e-08 3.7e-05 24.0 0.3 1 23 574 596 574 596 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 BCL6-201 - 706 3e-20 71.5 53.3 5 7 1e-05 0.013 16.0 0.2 1 23 602 624 602 624 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 BCL6-201 - 706 3e-20 71.5 53.3 6 7 4.7e-07 0.00057 20.2 1.6 1 23 630 652 630 652 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 BCL6-201 - 706 3e-20 71.5 53.3 7 7 1e-05 0.012 16.0 6.5 1 23 658 681 658 681 0.97 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 BCL6-201 - 706 7e-12 45.1 51.2 1 7 5.9 7e+03 -1.6 1.0 2 11 474 483 473 492 0.68 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 BCL6-201 - 706 7e-12 45.1 51.2 2 7 0.0031 3.8 8.6 2.6 1 24 518 541 518 541 0.88 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 BCL6-201 - 706 7e-12 45.1 51.2 3 7 0.00029 0.34 11.9 0.8 1 23 546 568 546 569 0.88 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 BCL6-201 - 706 7e-12 45.1 51.2 4 7 1.6e-05 0.019 15.8 0.2 1 23 574 596 574 597 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 BCL6-201 - 706 7e-12 45.1 51.2 5 7 3.5e-05 0.042 14.7 0.3 1 23 602 624 602 625 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 BCL6-201 - 706 7e-12 45.1 51.2 6 7 1e-05 0.012 16.4 1.1 1 23 630 652 630 653 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 BCL6-201 - 706 7e-12 45.1 51.2 7 7 0.0068 8.1 7.6 6.0 1 24 658 681 658 681 0.96 C2H2-type zinc finger zf-met PF12874.7 25 BCL6-201 - 706 4.3e-11 42.8 31.4 1 6 0.0035 4.2 7.9 1.5 1 19 518 536 518 537 0.96 Zinc-finger of C2H2 type zf-met PF12874.7 25 BCL6-201 - 706 4.3e-11 42.8 31.4 2 6 0.003 3.6 8.1 0.3 1 19 546 564 546 566 0.95 Zinc-finger of C2H2 type zf-met PF12874.7 25 BCL6-201 - 706 4.3e-11 42.8 31.4 3 6 6.7e-06 0.008 16.5 0.1 1 21 574 594 574 596 0.93 Zinc-finger of C2H2 type zf-met PF12874.7 25 BCL6-201 - 706 4.3e-11 42.8 31.4 4 6 0.025 29 5.2 0.2 1 19 602 620 602 624 0.92 Zinc-finger of C2H2 type zf-met PF12874.7 25 BCL6-201 - 706 4.3e-11 42.8 31.4 5 6 1e-05 0.012 16.0 0.1 3 22 632 651 630 653 0.91 Zinc-finger of C2H2 type zf-met PF12874.7 25 BCL6-201 - 706 4.3e-11 42.8 31.4 6 6 0.0084 10 6.7 1.9 1 21 658 678 658 678 0.95 Zinc-finger of C2H2 type # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/BCL6-201.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/BCL6-201.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/BCL6-201.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/BCL6-201.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/BCL6-201.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:53:32 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- BTB PF00651.31 111 BCL6-202 - 706 8.5e-28 96.8 0.2 1 1 1.1e-30 1.4e-27 96.1 0.2 1 110 22 128 22 129 0.95 BTB/POZ domain zf-H2C2_2 PF13465.6 26 BCL6-202 - 706 1.3e-22 79.1 55.5 1 7 7.3 8.7e+03 -2.5 0.4 16 21 474 479 464 481 0.72 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 BCL6-202 - 706 1.3e-22 79.1 55.5 2 7 8.8e-05 0.11 13.0 1.4 1 24 532 555 532 557 0.89 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 BCL6-202 - 706 1.3e-22 79.1 55.5 3 7 2.9e-08 3.5e-05 24.0 0.2 1 25 560 584 560 585 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 BCL6-202 - 706 1.3e-22 79.1 55.5 4 7 6.9e-10 8.3e-07 29.2 0.5 1 25 588 612 588 613 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 BCL6-202 - 706 1.3e-22 79.1 55.5 5 7 2.7e-08 3.3e-05 24.1 1.4 1 26 616 641 616 641 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 BCL6-202 - 706 1.3e-22 79.1 55.5 6 7 2.8e-09 3.4e-06 27.2 4.2 2 25 645 668 644 669 0.90 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 BCL6-202 - 706 1.3e-22 79.1 55.5 7 7 8.4 1e+04 -2.7 0.5 2 9 673 681 672 682 0.78 Zinc-finger double domain zf-C2H2 PF00096.26 23 BCL6-202 - 706 3e-20 71.5 53.3 1 7 9.9 1.2e+04 -2.8 1.1 2 19 474 491 474 493 0.75 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 BCL6-202 - 706 3e-20 71.5 53.3 2 7 0.0004 0.48 11.0 2.6 1 23 518 541 518 541 0.93 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 BCL6-202 - 706 3e-20 71.5 53.3 3 7 1.2e-05 0.014 15.8 1.1 1 23 546 568 546 568 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 BCL6-202 - 706 3e-20 71.5 53.3 4 7 3.1e-08 3.7e-05 24.0 0.3 1 23 574 596 574 596 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 BCL6-202 - 706 3e-20 71.5 53.3 5 7 1e-05 0.013 16.0 0.2 1 23 602 624 602 624 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 BCL6-202 - 706 3e-20 71.5 53.3 6 7 4.7e-07 0.00057 20.2 1.6 1 23 630 652 630 652 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 BCL6-202 - 706 3e-20 71.5 53.3 7 7 1e-05 0.012 16.0 6.5 1 23 658 681 658 681 0.97 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 BCL6-202 - 706 7e-12 45.1 51.2 1 7 5.9 7e+03 -1.6 1.0 2 11 474 483 473 492 0.68 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 BCL6-202 - 706 7e-12 45.1 51.2 2 7 0.0031 3.8 8.6 2.6 1 24 518 541 518 541 0.88 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 BCL6-202 - 706 7e-12 45.1 51.2 3 7 0.00029 0.34 11.9 0.8 1 23 546 568 546 569 0.88 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 BCL6-202 - 706 7e-12 45.1 51.2 4 7 1.6e-05 0.019 15.8 0.2 1 23 574 596 574 597 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 BCL6-202 - 706 7e-12 45.1 51.2 5 7 3.5e-05 0.042 14.7 0.3 1 23 602 624 602 625 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 BCL6-202 - 706 7e-12 45.1 51.2 6 7 1e-05 0.012 16.4 1.1 1 23 630 652 630 653 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 BCL6-202 - 706 7e-12 45.1 51.2 7 7 0.0068 8.1 7.6 6.0 1 24 658 681 658 681 0.96 C2H2-type zinc finger zf-met PF12874.7 25 BCL6-202 - 706 4.3e-11 42.8 31.4 1 6 0.0035 4.2 7.9 1.5 1 19 518 536 518 537 0.96 Zinc-finger of C2H2 type zf-met PF12874.7 25 BCL6-202 - 706 4.3e-11 42.8 31.4 2 6 0.003 3.6 8.1 0.3 1 19 546 564 546 566 0.95 Zinc-finger of C2H2 type zf-met PF12874.7 25 BCL6-202 - 706 4.3e-11 42.8 31.4 3 6 6.7e-06 0.008 16.5 0.1 1 21 574 594 574 596 0.93 Zinc-finger of C2H2 type zf-met PF12874.7 25 BCL6-202 - 706 4.3e-11 42.8 31.4 4 6 0.025 29 5.2 0.2 1 19 602 620 602 624 0.92 Zinc-finger of C2H2 type zf-met PF12874.7 25 BCL6-202 - 706 4.3e-11 42.8 31.4 5 6 1e-05 0.012 16.0 0.1 3 22 632 651 630 653 0.91 Zinc-finger of C2H2 type zf-met PF12874.7 25 BCL6-202 - 706 4.3e-11 42.8 31.4 6 6 0.0084 10 6.7 1.9 1 21 658 678 658 678 0.95 Zinc-finger of C2H2 type # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/BCL6-202.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/BCL6-202.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/BCL6-202.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/BCL6-202.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/BCL6-202.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:53:33 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 BCL6-203 - 617 3.4e-23 81.0 54.9 1 7 5.8 7.5e+03 -2.3 0.4 16 21 385 390 375 392 0.72 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 BCL6-203 - 617 3.4e-23 81.0 54.9 2 7 7e-05 0.09 13.3 1.4 1 24 443 466 443 468 0.89 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 BCL6-203 - 617 3.4e-23 81.0 54.9 3 7 2.3e-08 3e-05 24.2 0.2 1 25 471 495 471 496 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 BCL6-203 - 617 3.4e-23 81.0 54.9 4 7 5.5e-10 7e-07 29.4 0.5 1 25 499 523 499 524 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 BCL6-203 - 617 3.4e-23 81.0 54.9 5 7 2.2e-08 2.8e-05 24.3 1.4 1 26 527 552 527 552 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 BCL6-203 - 617 3.4e-23 81.0 54.9 6 7 2.3e-09 2.9e-06 27.5 4.2 2 25 556 579 555 580 0.90 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 BCL6-203 - 617 3.4e-23 81.0 54.9 7 7 6.8 8.7e+03 -2.5 0.5 2 9 584 592 583 593 0.78 Zinc-finger double domain zf-C2H2 PF00096.26 23 BCL6-203 - 617 1.3e-20 72.6 53.3 1 7 7.9 1e+04 -2.6 1.1 2 19 385 402 385 404 0.75 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 BCL6-203 - 617 1.3e-20 72.6 53.3 2 7 0.00032 0.41 11.2 2.6 1 23 429 452 429 452 0.93 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 BCL6-203 - 617 1.3e-20 72.6 53.3 3 7 9.5e-06 0.012 16.0 1.1 1 23 457 479 457 479 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 BCL6-203 - 617 1.3e-20 72.6 53.3 4 7 2.4e-08 3.1e-05 24.2 0.3 1 23 485 507 485 507 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 BCL6-203 - 617 1.3e-20 72.6 53.3 5 7 8.4e-06 0.011 16.2 0.2 1 23 513 535 513 535 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 BCL6-203 - 617 1.3e-20 72.6 53.3 6 7 3.8e-07 0.00048 20.4 1.6 1 23 541 563 541 563 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 BCL6-203 - 617 1.3e-20 72.6 53.3 7 7 8e-06 0.01 16.2 6.5 1 23 569 592 569 592 0.97 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 BCL6-203 - 617 3.1e-12 46.2 51.2 1 7 4.7 6e+03 -1.3 1.0 2 11 385 394 384 403 0.68 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 BCL6-203 - 617 3.1e-12 46.2 51.2 2 7 0.0025 3.2 8.8 2.6 1 24 429 452 429 452 0.88 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 BCL6-203 - 617 3.1e-12 46.2 51.2 3 7 0.00023 0.29 12.1 0.8 1 23 457 479 457 480 0.88 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 BCL6-203 - 617 3.1e-12 46.2 51.2 4 7 1.2e-05 0.016 16.0 0.2 1 23 485 507 485 508 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 BCL6-203 - 617 3.1e-12 46.2 51.2 5 7 2.8e-05 0.036 14.9 0.3 1 23 513 535 513 536 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 BCL6-203 - 617 3.1e-12 46.2 51.2 6 7 8e-06 0.01 16.6 1.1 1 23 541 563 541 564 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 BCL6-203 - 617 3.1e-12 46.2 51.2 7 7 0.0054 6.9 7.8 6.0 1 24 569 592 569 592 0.96 C2H2-type zinc finger zf-met PF12874.7 25 BCL6-203 - 617 7e-12 45.3 29.6 1 6 0.0028 3.6 8.1 1.5 1 19 429 447 429 448 0.96 Zinc-finger of C2H2 type zf-met PF12874.7 25 BCL6-203 - 617 7e-12 45.3 29.6 2 6 0.0024 3.1 8.3 0.3 1 19 457 475 457 477 0.95 Zinc-finger of C2H2 type zf-met PF12874.7 25 BCL6-203 - 617 7e-12 45.3 29.6 3 6 5.4e-06 0.0069 16.7 0.1 1 21 485 505 485 507 0.93 Zinc-finger of C2H2 type zf-met PF12874.7 25 BCL6-203 - 617 7e-12 45.3 29.6 4 6 0.02 25 5.4 0.2 1 19 513 531 513 535 0.92 Zinc-finger of C2H2 type zf-met PF12874.7 25 BCL6-203 - 617 7e-12 45.3 29.6 5 6 8.1e-06 0.01 16.2 0.1 3 22 543 562 541 564 0.91 Zinc-finger of C2H2 type zf-met PF12874.7 25 BCL6-203 - 617 7e-12 45.3 29.6 6 6 0.0067 8.6 6.9 1.9 1 21 569 589 569 589 0.95 Zinc-finger of C2H2 type zf-C2H2_jaz PF12171.8 27 BCL6-203 - 617 3.3e-07 30.4 15.0 1 5 8.8e-05 0.11 12.8 1.1 2 20 429 447 428 449 0.96 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 BCL6-203 - 617 3.3e-07 30.4 15.0 2 5 0.00086 1.1 9.6 0.0 2 21 485 504 484 505 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 BCL6-203 - 617 3.3e-07 30.4 15.0 3 5 0.38 4.9e+02 1.2 0.1 2 20 513 531 512 532 0.76 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 BCL6-203 - 617 3.3e-07 30.4 15.0 4 5 0.019 24 5.3 0.0 2 22 541 561 540 561 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 BCL6-203 - 617 3.3e-07 30.4 15.0 5 5 0.014 18 5.7 1.6 4 24 571 591 568 591 0.90 Zinc-finger double-stranded RNA-binding # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/BCL6-203.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/BCL6-203.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/BCL6-203.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/BCL6-203.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/BCL6-203.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:53:33 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/BCL6-204.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/BCL6-204.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/BCL6-204.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/BCL6-204.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/BCL6-204.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:53:34 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/BCL6-205.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/BCL6-205.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/BCL6-205.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/BCL6-205.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/BCL6-205.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:53:34 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- BTB PF00651.31 111 BCL6-206 - 650 7.7e-28 96.9 0.2 1 1 1.1e-30 1.2e-27 96.3 0.2 1 110 22 128 22 129 0.95 BTB/POZ domain zf-H2C2_2 PF13465.6 26 BCL6-206 - 650 8.3e-18 63.9 39.5 1 6 7.5 7.9e+03 -2.4 0.4 16 21 474 479 464 481 0.72 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 BCL6-206 - 650 8.3e-18 63.9 39.5 2 6 0.0034 3.6 8.2 0.6 11 25 514 528 511 529 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 BCL6-206 - 650 8.3e-18 63.9 39.5 3 6 7.1e-10 7.5e-07 29.3 0.5 1 25 532 556 532 557 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 BCL6-206 - 650 8.3e-18 63.9 39.5 4 6 2.8e-08 3e-05 24.3 1.4 1 26 560 585 560 585 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 BCL6-206 - 650 8.3e-18 63.9 39.5 5 6 2.9e-09 3.1e-06 27.4 4.2 2 25 589 612 588 613 0.90 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 BCL6-206 - 650 8.3e-18 63.9 39.5 6 6 8.7 9.2e+03 -2.6 0.5 2 9 617 625 616 626 0.78 Zinc-finger double domain zf-C2H2 PF00096.26 23 BCL6-206 - 650 9.6e-16 57.3 34.7 1 4 3.2e-08 3.3e-05 24.1 0.3 1 23 518 540 518 540 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 BCL6-206 - 650 9.6e-16 57.3 34.7 2 4 1.1e-05 0.011 16.1 0.2 1 23 546 568 546 568 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 BCL6-206 - 650 9.6e-16 57.3 34.7 3 4 4.9e-07 0.00051 20.3 1.6 1 23 574 596 574 596 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 BCL6-206 - 650 9.6e-16 57.3 34.7 4 4 1e-05 0.011 16.2 6.5 1 23 602 625 602 625 0.97 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 BCL6-206 - 650 2.9e-09 37.0 33.2 1 5 6 6.4e+03 -1.4 1.0 2 11 474 483 473 492 0.68 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 BCL6-206 - 650 2.9e-09 37.0 33.2 2 5 1.6e-05 0.017 15.9 0.2 1 23 518 540 518 541 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 BCL6-206 - 650 2.9e-09 37.0 33.2 3 5 3.6e-05 0.038 14.8 0.3 1 23 546 568 546 569 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 BCL6-206 - 650 2.9e-09 37.0 33.2 4 5 1e-05 0.011 16.5 1.1 1 23 574 596 574 597 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 BCL6-206 - 650 2.9e-09 37.0 33.2 5 5 0.007 7.4 7.7 6.0 1 24 602 625 602 625 0.96 C2H2-type zinc finger zf-met PF12874.7 25 BCL6-206 - 650 3.1e-09 36.9 16.9 1 4 6.9e-06 0.0073 16.7 0.1 1 21 518 538 518 540 0.93 Zinc-finger of C2H2 type zf-met PF12874.7 25 BCL6-206 - 650 3.1e-09 36.9 16.9 2 4 0.025 27 5.3 0.2 1 19 546 564 546 568 0.92 Zinc-finger of C2H2 type zf-met PF12874.7 25 BCL6-206 - 650 3.1e-09 36.9 16.9 3 4 1e-05 0.011 16.1 0.1 3 22 576 595 574 597 0.91 Zinc-finger of C2H2 type zf-met PF12874.7 25 BCL6-206 - 650 3.1e-09 36.9 16.9 4 4 0.0086 9.1 6.8 1.9 1 21 602 622 602 622 0.95 Zinc-finger of C2H2 type # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/BCL6-206.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/BCL6-206.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/BCL6-206.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/BCL6-206.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/BCL6-206.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:53:34 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/BCL6-207.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/BCL6-207.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/BCL6-207.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/BCL6-207.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/BCL6-207.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:53:35 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/BCL6-208.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/BCL6-208.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/BCL6-208.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/BCL6-208.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/BCL6-208.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:53:35 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/BCL6-209.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/BCL6-209.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/BCL6-209.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/BCL6-209.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/BCL6-209.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:53:35 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/BCL6-210.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/BCL6-210.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/BCL6-210.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/BCL6-210.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/BCL6-210.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:53:36 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- BTB PF00651.31 111 BCL6-211 - 650 7.7e-28 96.9 0.2 1 1 1.1e-30 1.2e-27 96.3 0.2 1 110 22 128 22 129 0.95 BTB/POZ domain zf-H2C2_2 PF13465.6 26 BCL6-211 - 650 8.3e-18 63.9 39.5 1 6 7.5 7.9e+03 -2.4 0.4 16 21 474 479 464 481 0.72 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 BCL6-211 - 650 8.3e-18 63.9 39.5 2 6 0.0034 3.6 8.2 0.6 11 25 514 528 511 529 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 BCL6-211 - 650 8.3e-18 63.9 39.5 3 6 7.1e-10 7.5e-07 29.3 0.5 1 25 532 556 532 557 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 BCL6-211 - 650 8.3e-18 63.9 39.5 4 6 2.8e-08 3e-05 24.3 1.4 1 26 560 585 560 585 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 BCL6-211 - 650 8.3e-18 63.9 39.5 5 6 2.9e-09 3.1e-06 27.4 4.2 2 25 589 612 588 613 0.90 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 BCL6-211 - 650 8.3e-18 63.9 39.5 6 6 8.7 9.2e+03 -2.6 0.5 2 9 617 625 616 626 0.78 Zinc-finger double domain zf-C2H2 PF00096.26 23 BCL6-211 - 650 9.6e-16 57.3 34.7 1 4 3.2e-08 3.3e-05 24.1 0.3 1 23 518 540 518 540 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 BCL6-211 - 650 9.6e-16 57.3 34.7 2 4 1.1e-05 0.011 16.1 0.2 1 23 546 568 546 568 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 BCL6-211 - 650 9.6e-16 57.3 34.7 3 4 4.9e-07 0.00051 20.3 1.6 1 23 574 596 574 596 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 BCL6-211 - 650 9.6e-16 57.3 34.7 4 4 1e-05 0.011 16.2 6.5 1 23 602 625 602 625 0.97 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 BCL6-211 - 650 2.9e-09 37.0 33.2 1 5 6 6.4e+03 -1.4 1.0 2 11 474 483 473 492 0.68 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 BCL6-211 - 650 2.9e-09 37.0 33.2 2 5 1.6e-05 0.017 15.9 0.2 1 23 518 540 518 541 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 BCL6-211 - 650 2.9e-09 37.0 33.2 3 5 3.6e-05 0.038 14.8 0.3 1 23 546 568 546 569 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 BCL6-211 - 650 2.9e-09 37.0 33.2 4 5 1e-05 0.011 16.5 1.1 1 23 574 596 574 597 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 BCL6-211 - 650 2.9e-09 37.0 33.2 5 5 0.007 7.4 7.7 6.0 1 24 602 625 602 625 0.96 C2H2-type zinc finger zf-met PF12874.7 25 BCL6-211 - 650 3.1e-09 36.9 16.9 1 4 6.9e-06 0.0073 16.7 0.1 1 21 518 538 518 540 0.93 Zinc-finger of C2H2 type zf-met PF12874.7 25 BCL6-211 - 650 3.1e-09 36.9 16.9 2 4 0.025 27 5.3 0.2 1 19 546 564 546 568 0.92 Zinc-finger of C2H2 type zf-met PF12874.7 25 BCL6-211 - 650 3.1e-09 36.9 16.9 3 4 1e-05 0.011 16.1 0.1 3 22 576 595 574 597 0.91 Zinc-finger of C2H2 type zf-met PF12874.7 25 BCL6-211 - 650 3.1e-09 36.9 16.9 4 4 0.0086 9.1 6.8 1.9 1 21 602 622 602 622 0.95 Zinc-finger of C2H2 type # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/BCL6-211.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/BCL6-211.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/BCL6-211.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/BCL6-211.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/BCL6-211.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:53:36 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- BTB PF00651.31 111 BCL6B-201 - 479 2.8e-23 82.3 0.0 1 1 4.7e-26 4e-23 81.8 0.0 1 109 28 133 28 135 0.93 BTB/POZ domain zf-H2C2_2 PF13465.6 26 BCL6B-201 - 479 2.4e-22 78.3 44.7 1 6 0.0012 1 9.9 0.9 12 25 325 338 324 339 0.89 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 BCL6B-201 - 479 2.4e-22 78.3 44.7 2 6 4.3e-09 3.7e-06 27.1 0.6 1 25 342 366 342 367 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 BCL6B-201 - 479 2.4e-22 78.3 44.7 3 6 6.6e-10 5.6e-07 29.7 0.6 1 25 370 394 370 395 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 BCL6B-201 - 479 2.4e-22 78.3 44.7 4 6 6e-09 5.2e-06 26.7 2.3 1 26 398 423 398 423 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 BCL6B-201 - 479 2.4e-22 78.3 44.7 5 6 5.2e-05 0.044 14.2 2.2 2 21 427 446 426 451 0.81 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 BCL6B-201 - 479 2.4e-22 78.3 44.7 6 6 7.7 6.6e+03 -2.1 0.5 2 9 455 463 454 464 0.78 Zinc-finger double domain zf-C2H2 PF00096.26 23 BCL6B-201 - 479 1e-14 54.0 44.2 1 7 4.7 4e+03 -1.4 0.0 5 17 266 278 265 279 0.84 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 BCL6B-201 - 479 1e-14 54.0 44.2 2 7 7.8 6.7e+03 -2.1 0.1 1 7 301 307 301 309 0.85 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 BCL6B-201 - 479 1e-14 54.0 44.2 3 7 3.3e-05 0.028 14.9 1.8 1 23 328 350 328 350 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 BCL6B-201 - 479 1e-14 54.0 44.2 4 7 4.7e-07 0.0004 20.7 1.1 1 23 356 378 356 378 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 BCL6B-201 - 479 1e-14 54.0 44.2 5 7 2.7e-05 0.023 15.2 0.4 1 23 384 406 384 406 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 BCL6B-201 - 479 1e-14 54.0 44.2 6 7 7.7e-07 0.00066 20.0 2.0 1 23 412 434 412 434 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 BCL6B-201 - 479 1e-14 54.0 44.2 7 7 0.0027 2.3 8.8 4.6 6 23 445 463 445 463 0.97 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 BCL6B-201 - 479 1.1e-08 35.2 40.3 1 6 5.3 4.5e+03 -1.0 0.3 1 16 301 316 301 318 0.76 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 BCL6B-201 - 479 1.1e-08 35.2 40.3 2 6 0.00067 0.58 11.2 1.3 1 23 328 350 328 351 0.90 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 BCL6B-201 - 479 1.1e-08 35.2 40.3 3 6 6.1e-06 0.0052 17.5 0.7 1 23 356 378 356 379 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 BCL6B-201 - 479 1.1e-08 35.2 40.3 4 6 0.00013 0.11 13.4 0.5 1 23 384 406 384 407 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 BCL6B-201 - 479 1.1e-08 35.2 40.3 5 6 4e-05 0.034 15.0 1.3 1 23 412 434 412 435 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 BCL6B-201 - 479 1.1e-08 35.2 40.3 6 6 0.32 2.8e+02 2.8 3.0 6 24 445 463 440 463 0.92 C2H2-type zinc finger zf-met PF12874.7 25 BCL6B-201 - 479 3.1e-08 33.7 16.3 1 5 0.0027 2.3 8.7 0.3 1 19 328 346 328 347 0.96 Zinc-finger of C2H2 type zf-met PF12874.7 25 BCL6B-201 - 479 3.1e-08 33.7 16.3 2 5 7.2e-06 0.0061 16.9 0.4 1 24 356 377 356 378 0.90 Zinc-finger of C2H2 type zf-met PF12874.7 25 BCL6B-201 - 479 3.1e-08 33.7 16.3 3 5 0.08 68 4.1 0.3 1 19 384 402 384 406 0.91 Zinc-finger of C2H2 type zf-met PF12874.7 25 BCL6B-201 - 479 3.1e-08 33.7 16.3 4 5 0.00097 0.83 10.1 0.1 3 21 414 432 412 435 0.90 Zinc-finger of C2H2 type zf-met PF12874.7 25 BCL6B-201 - 479 3.1e-08 33.7 16.3 5 5 0.4 3.4e+02 1.8 0.0 6 21 445 460 443 460 0.89 Zinc-finger of C2H2 type # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/BCL6B-201.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/BCL6B-201.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/BCL6B-201.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/BCL6B-201.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/BCL6B-201.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:53:36 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/BCL6B-202.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/BCL6B-202.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/BCL6B-202.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/BCL6B-202.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/BCL6B-202.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:53:37 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/BCL6B-203.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/BCL6B-203.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/BCL6B-203.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/BCL6B-203.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/BCL6B-203.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:53:37 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- BTB PF00651.31 111 BCL6B-204 - 89 5.3e-07 29.8 0.0 1 1 3.8e-11 6.8e-07 29.5 0.0 1 34 28 60 28 65 0.94 BTB/POZ domain # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/BCL6B-204.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/BCL6B-204.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/BCL6B-204.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/BCL6B-204.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/BCL6B-204.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:53:37 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/BCL6B-205.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/BCL6B-205.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/BCL6B-205.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/BCL6B-205.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/BCL6B-205.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:53:38 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 CTCF-201 - 727 1.5e-50 167.5 94.6 1 11 0.015 19 5.9 3.0 11 23 262 274 256 276 0.78 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 CTCF-201 - 727 1.5e-50 167.5 94.6 2 11 1e-09 1.3e-06 28.5 3.0 1 25 280 304 280 305 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 CTCF-201 - 727 1.5e-50 167.5 94.6 3 11 3.7e-09 4.8e-06 26.8 0.6 2 26 309 333 309 333 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 CTCF-201 - 727 1.5e-50 167.5 94.6 4 11 6.1e-08 7.8e-05 22.9 2.8 2 24 337 360 336 361 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 CTCF-201 - 727 1.5e-50 167.5 94.6 5 11 7.9e-12 1e-08 35.2 0.6 2 23 366 387 365 389 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 CTCF-201 - 727 1.5e-50 167.5 94.6 6 11 1.6e-10 2e-07 31.1 3.1 2 25 394 417 393 418 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 CTCF-201 - 727 1.5e-50 167.5 94.6 7 11 0.011 14 6.3 1.9 4 21 424 443 422 446 0.80 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 CTCF-201 - 727 1.5e-50 167.5 94.6 8 11 0.18 2.3e+02 2.5 0.6 5 24 455 476 452 477 0.69 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 CTCF-201 - 727 1.5e-50 167.5 94.6 9 11 1e-07 0.00013 22.2 1.7 1 23 481 503 481 506 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 CTCF-201 - 727 1.5e-50 167.5 94.6 10 11 8.6e-10 1.1e-06 28.8 3.9 4 25 512 533 507 534 0.86 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 CTCF-201 - 727 1.5e-50 167.5 94.6 11 11 6.8e-05 0.087 13.3 0.8 3 26 539 566 538 566 0.79 Zinc-finger double domain zf-C2H2 PF00096.26 23 CTCF-201 - 727 3e-34 115.6 101.7 1 11 1.1e-06 0.0014 18.9 4.0 1 23 266 288 266 288 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 CTCF-201 - 727 3e-34 115.6 101.7 2 11 9.8e-07 0.0013 19.1 4.0 1 23 294 316 294 316 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 CTCF-201 - 727 3e-34 115.6 101.7 3 11 6.9e-08 8.8e-05 22.7 1.1 1 23 322 345 322 345 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 CTCF-201 - 727 3e-34 115.6 101.7 4 11 3.1e-05 0.039 14.4 0.8 1 23 351 373 351 373 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 CTCF-201 - 727 3e-34 115.6 101.7 5 11 2.5e-06 0.0032 17.8 3.0 1 23 379 401 379 401 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 CTCF-201 - 727 3e-34 115.6 101.7 6 11 0.00033 0.43 11.1 1.8 1 23 407 430 407 430 0.95 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 CTCF-201 - 727 3e-34 115.6 101.7 7 11 1.1e-05 0.013 15.9 1.7 1 23 437 460 437 460 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 CTCF-201 - 727 3e-34 115.6 101.7 8 11 0.0001 0.13 12.7 1.7 2 23 468 489 467 489 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 CTCF-201 - 727 3e-34 115.6 101.7 9 11 0.0018 2.3 8.9 5.7 1 23 495 517 495 517 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 CTCF-201 - 727 3e-34 115.6 101.7 10 11 6.1e-05 0.078 13.5 4.4 1 23 523 546 523 546 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 CTCF-201 - 727 3e-34 115.6 101.7 11 11 1.6e-06 0.002 18.5 0.3 1 19 555 573 555 575 0.96 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 CTCF-201 - 727 2.9e-26 89.9 96.1 1 11 2.7e-05 0.035 15.0 3.0 1 23 266 288 266 289 0.89 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 CTCF-201 - 727 2.9e-26 89.9 96.1 2 11 3.8e-06 0.0048 17.6 2.7 1 23 294 316 294 317 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 CTCF-201 - 727 2.9e-26 89.9 96.1 3 11 3.9e-05 0.05 14.5 0.9 1 24 322 345 322 345 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 CTCF-201 - 727 2.9e-26 89.9 96.1 4 11 0.00035 0.44 11.5 0.8 1 23 351 373 351 374 0.86 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 CTCF-201 - 727 2.9e-26 89.9 96.1 5 11 7.1e-06 0.0091 16.8 1.9 1 23 379 401 379 402 0.84 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 CTCF-201 - 727 2.9e-26 89.9 96.1 6 11 0.00036 0.46 11.5 1.3 1 24 407 430 407 430 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 CTCF-201 - 727 2.9e-26 89.9 96.1 7 11 0.00012 0.15 13.0 1.6 1 24 437 460 437 460 0.97 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 CTCF-201 - 727 2.9e-26 89.9 96.1 8 11 1.2e-05 0.015 16.1 2.0 2 23 468 489 467 490 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 CTCF-201 - 727 2.9e-26 89.9 96.1 9 11 0.037 47 5.2 3.9 1 23 495 517 495 518 0.70 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 CTCF-201 - 727 2.9e-26 89.9 96.1 10 11 4.7e-05 0.06 14.2 3.5 1 24 523 546 523 546 0.82 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 CTCF-201 - 727 2.9e-26 89.9 96.1 11 11 0.00012 0.15 13.0 0.8 1 20 555 574 555 577 0.92 C2H2-type zinc finger zf-H2C2_5 PF13909.6 26 CTCF-201 - 727 2.7e-18 65.4 81.6 1 10 3.7e-07 0.00047 19.8 4.0 1 25 266 289 266 290 0.96 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 CTCF-201 - 727 2.7e-18 65.4 81.6 2 10 0.19 2.5e+02 1.5 0.5 16 26 309 318 307 318 0.93 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 CTCF-201 - 727 2.7e-18 65.4 81.6 3 10 0.013 17 5.3 2.1 1 25 322 346 322 347 0.95 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 CTCF-201 - 727 2.7e-18 65.4 81.6 4 10 8.3e-10 1.1e-06 28.3 0.6 1 26 351 375 351 375 0.98 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 CTCF-201 - 727 2.7e-18 65.4 81.6 5 10 7.4e-08 9.4e-05 22.1 3.3 1 26 379 403 379 403 0.98 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 CTCF-201 - 727 2.7e-18 65.4 81.6 6 10 0.029 37 4.2 0.5 12 25 418 431 417 432 0.90 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 CTCF-201 - 727 2.7e-18 65.4 81.6 7 10 2.1e-05 0.027 14.2 0.7 1 25 437 461 437 461 0.95 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 CTCF-201 - 727 2.7e-18 65.4 81.6 8 10 0.28 3.6e+02 1.0 0.3 2 7 468 473 468 490 0.93 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 CTCF-201 - 727 2.7e-18 65.4 81.6 9 10 2.2e-05 0.028 14.2 4.5 1 26 495 519 495 519 0.97 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 CTCF-201 - 727 2.7e-18 65.4 81.6 10 10 0.15 2e+02 1.9 3.0 1 24 523 546 523 548 0.72 C2H2-type zinc-finger domain zf-C2H2_jaz PF12171.8 27 CTCF-201 - 727 1.6e-08 34.6 58.8 1 11 0.00018 0.23 11.8 0.9 2 24 266 288 265 289 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 CTCF-201 - 727 1.6e-08 34.6 58.8 2 11 3.3e-05 0.042 14.1 0.1 2 24 294 316 293 317 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 CTCF-201 - 727 1.6e-08 34.6 58.8 3 11 0.018 23 5.4 0.0 2 21 322 341 321 342 0.91 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 CTCF-201 - 727 1.6e-08 34.6 58.8 4 11 0.039 49 4.4 0.3 2 24 351 373 350 373 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 CTCF-201 - 727 1.6e-08 34.6 58.8 5 11 0.45 5.7e+02 1.0 0.4 2 24 379 401 378 402 0.87 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 CTCF-201 - 727 1.6e-08 34.6 58.8 6 11 0.06 77 3.8 0.2 2 21 407 426 406 429 0.90 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 CTCF-201 - 727 1.6e-08 34.6 58.8 7 11 0.078 99 3.4 0.1 2 22 437 457 436 459 0.87 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 CTCF-201 - 727 1.6e-08 34.6 58.8 8 11 0.00029 0.37 11.1 3.2 4 25 469 490 467 490 0.96 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 CTCF-201 - 727 1.6e-08 34.6 58.8 9 11 1 1.3e+03 -0.1 3.1 2 24 495 517 494 517 0.91 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 CTCF-201 - 727 1.6e-08 34.6 58.8 10 11 9.2e-05 0.12 12.7 1.0 2 22 523 543 522 543 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 CTCF-201 - 727 1.6e-08 34.6 58.8 11 11 1.9 2.4e+03 -1.0 0.1 3 20 556 573 555 573 0.77 Zinc-finger double-stranded RNA-binding # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/CTCF-201.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/CTCF-201.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/CTCF-201.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/CTCF-201.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/CTCF-201.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:53:38 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 CTCF-202 - 399 3.8e-39 131.4 65.9 1 8 3.6e-08 3.8e-05 23.9 2.8 2 24 9 32 8 33 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 CTCF-202 - 399 3.8e-39 131.4 65.9 2 8 4.7e-12 4.9e-09 36.2 0.6 2 23 38 59 37 61 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 CTCF-202 - 399 3.8e-39 131.4 65.9 3 8 9.3e-11 9.8e-08 32.1 3.1 2 25 66 89 65 90 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 CTCF-202 - 399 3.8e-39 131.4 65.9 4 8 0.0066 7 7.3 1.9 4 21 96 115 94 118 0.80 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 CTCF-202 - 399 3.8e-39 131.4 65.9 5 8 0.11 1.1e+02 3.5 0.6 5 24 127 148 124 149 0.70 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 CTCF-202 - 399 3.8e-39 131.4 65.9 6 8 5.9e-08 6.3e-05 23.2 1.7 1 23 153 175 153 178 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 CTCF-202 - 399 3.8e-39 131.4 65.9 7 8 5.1e-10 5.4e-07 29.8 3.9 4 25 184 205 179 206 0.86 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 CTCF-202 - 399 3.8e-39 131.4 65.9 8 8 4e-05 0.042 14.3 0.8 3 26 211 238 210 238 0.79 Zinc-finger double domain zf-C2H2 PF00096.26 23 CTCF-202 - 399 2e-24 84.6 74.1 1 9 0.012 12 6.5 0.1 9 23 2 17 1 17 0.92 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 CTCF-202 - 399 2e-24 84.6 74.1 2 9 1.8e-05 0.019 15.4 0.8 1 23 23 45 23 45 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 CTCF-202 - 399 2e-24 84.6 74.1 3 9 1.5e-06 0.0016 18.8 3.0 1 23 51 73 51 73 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 CTCF-202 - 399 2e-24 84.6 74.1 4 9 0.0002 0.21 12.1 1.8 1 23 79 102 79 102 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 CTCF-202 - 399 2e-24 84.6 74.1 5 9 6.2e-06 0.0066 16.9 1.7 1 23 109 132 109 132 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 CTCF-202 - 399 2e-24 84.6 74.1 6 9 6.2e-05 0.066 13.7 1.7 2 23 140 161 139 161 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 CTCF-202 - 399 2e-24 84.6 74.1 7 9 0.0011 1.1 9.8 5.7 1 23 167 189 167 189 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 CTCF-202 - 399 2e-24 84.6 74.1 8 9 3.6e-05 0.038 14.5 4.4 1 23 195 218 195 218 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 CTCF-202 - 399 2e-24 84.6 74.1 9 9 9.5e-07 0.001 19.4 0.3 1 19 227 245 227 247 0.96 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 CTCF-202 - 399 2.2e-19 68.4 71.4 1 9 0.3 3.2e+02 2.6 0.1 10 24 3 17 1 17 0.90 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 CTCF-202 - 399 2.2e-19 68.4 71.4 2 9 0.0002 0.21 12.5 0.8 1 23 23 45 23 46 0.86 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 CTCF-202 - 399 2.2e-19 68.4 71.4 3 9 4.2e-06 0.0044 17.7 1.9 1 23 51 73 51 74 0.84 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 CTCF-202 - 399 2.2e-19 68.4 71.4 4 9 0.00021 0.22 12.4 1.3 1 24 79 102 79 102 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 CTCF-202 - 399 2.2e-19 68.4 71.4 5 9 6.8e-05 0.071 14.0 1.6 1 24 109 132 109 132 0.97 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 CTCF-202 - 399 2.2e-19 68.4 71.4 6 9 7e-06 0.0074 17.0 2.0 2 23 140 161 139 162 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 CTCF-202 - 399 2.2e-19 68.4 71.4 7 9 0.022 23 6.2 3.9 1 23 167 189 167 190 0.70 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 CTCF-202 - 399 2.2e-19 68.4 71.4 8 9 2.8e-05 0.029 15.2 3.5 1 24 195 218 195 218 0.82 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 CTCF-202 - 399 2.2e-19 68.4 71.4 9 9 6.9e-05 0.072 14.0 0.8 1 20 227 246 227 249 0.92 C2H2-type zinc finger zf-H2C2_5 PF13909.6 26 CTCF-202 - 399 7.2e-15 54.4 65.5 1 9 0.24 2.6e+02 1.5 0.9 12 25 5 18 4 19 0.89 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 CTCF-202 - 399 7.2e-15 54.4 65.5 2 9 5e-10 5.2e-07 29.3 0.6 1 26 23 47 23 47 0.98 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 CTCF-202 - 399 7.2e-15 54.4 65.5 3 9 4.4e-08 4.6e-05 23.1 3.3 1 26 51 75 51 75 0.98 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 CTCF-202 - 399 7.2e-15 54.4 65.5 4 9 0.018 19 5.1 0.5 12 25 90 103 89 104 0.90 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 CTCF-202 - 399 7.2e-15 54.4 65.5 5 9 1.2e-05 0.013 15.2 0.7 1 25 109 133 109 133 0.95 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 CTCF-202 - 399 7.2e-15 54.4 65.5 6 9 0.17 1.8e+02 2.0 0.4 2 7 140 145 140 162 0.93 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 CTCF-202 - 399 7.2e-15 54.4 65.5 7 9 1.3e-05 0.014 15.2 4.5 1 26 167 191 167 191 0.97 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 CTCF-202 - 399 7.2e-15 54.4 65.5 8 9 0.095 1e+02 2.8 3.0 1 24 195 218 195 220 0.73 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 CTCF-202 - 399 7.2e-15 54.4 65.5 9 9 8.9 9.4e+03 -3.5 0.1 12 19 238 245 237 245 0.83 C2H2-type zinc-finger domain Actin_micro PF17003.5 369 CTCF-202 - 399 4e-10 39.4 12.3 1 5 0.0031 3.2 6.8 2.7 222 248 19 45 8 59 0.81 Putative actin-like family Actin_micro PF17003.5 369 CTCF-202 - 399 4e-10 39.4 12.3 2 5 0.18 1.9e+02 1.0 0.1 225 246 50 72 46 75 0.85 Putative actin-like family Actin_micro PF17003.5 369 CTCF-202 - 399 4e-10 39.4 12.3 3 5 0.00059 0.63 9.2 1.8 218 253 71 105 62 109 0.82 Putative actin-like family Actin_micro PF17003.5 369 CTCF-202 - 399 4e-10 39.4 12.3 4 5 0.0071 7.5 5.6 1.4 221 255 104 139 103 158 0.80 Putative actin-like family Actin_micro PF17003.5 369 CTCF-202 - 399 4e-10 39.4 12.3 5 5 8e-05 0.084 12.0 0.0 217 272 158 356 148 366 0.63 Putative actin-like family # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/CTCF-202.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/CTCF-202.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/CTCF-202.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/CTCF-202.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/CTCF-202.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:53:39 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-C2H2 PF00096.26 23 CTCF-203 - 320 1.1e-08 35.1 15.8 1 2 3.6e-07 0.00054 20.3 4.0 1 23 266 288 266 288 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 CTCF-203 - 320 1.1e-08 35.1 15.8 2 2 3.1e-07 0.00046 20.5 4.0 1 23 294 316 294 316 0.98 Zinc finger, C2H2 type zf-H2C2_2 PF13465.6 26 CTCF-203 - 320 2e-07 31.1 18.3 1 3 0.0049 7.3 7.2 3.0 11 23 262 274 256 276 0.78 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 CTCF-203 - 320 2e-07 31.1 18.3 2 3 3.2e-10 4.8e-07 29.9 3.0 1 25 280 304 280 305 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 CTCF-203 - 320 2e-07 31.1 18.3 3 3 0.22 3.3e+02 2.0 0.1 2 11 309 318 309 319 0.93 Zinc-finger double domain zf-C2H2_4 PF13894.6 24 CTCF-203 - 320 5.4e-07 29.9 13.2 1 2 8.5e-06 0.013 16.3 3.0 1 23 266 288 266 289 0.89 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 CTCF-203 - 320 5.4e-07 29.9 13.2 2 2 1.2e-06 0.0018 19.0 2.7 1 23 294 316 294 317 0.96 C2H2-type zinc finger # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/CTCF-203.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/CTCF-203.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/CTCF-203.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/CTCF-203.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/CTCF-203.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:53:39 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 CTCF-204 - 218 8.5e-11 41.8 10.6 1 2 3.7e-10 2.5e-07 30.8 3.1 5 25 4 24 2 25 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 CTCF-204 - 218 8.5e-11 41.8 10.6 2 2 2.7e-05 0.019 15.4 0.8 3 26 30 57 29 57 0.79 Zinc-finger double domain # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/CTCF-204.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/CTCF-204.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/CTCF-204.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/CTCF-204.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/CTCF-204.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:53:39 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 CTCF-205 - 727 1.5e-50 167.5 94.6 1 11 0.015 19 5.9 3.0 11 23 262 274 256 276 0.78 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 CTCF-205 - 727 1.5e-50 167.5 94.6 2 11 1e-09 1.3e-06 28.5 3.0 1 25 280 304 280 305 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 CTCF-205 - 727 1.5e-50 167.5 94.6 3 11 3.7e-09 4.8e-06 26.8 0.6 2 26 309 333 309 333 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 CTCF-205 - 727 1.5e-50 167.5 94.6 4 11 6.1e-08 7.8e-05 22.9 2.8 2 24 337 360 336 361 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 CTCF-205 - 727 1.5e-50 167.5 94.6 5 11 7.9e-12 1e-08 35.2 0.6 2 23 366 387 365 389 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 CTCF-205 - 727 1.5e-50 167.5 94.6 6 11 1.6e-10 2e-07 31.1 3.1 2 25 394 417 393 418 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 CTCF-205 - 727 1.5e-50 167.5 94.6 7 11 0.011 14 6.3 1.9 4 21 424 443 422 446 0.80 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 CTCF-205 - 727 1.5e-50 167.5 94.6 8 11 0.18 2.3e+02 2.5 0.6 5 24 455 476 452 477 0.69 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 CTCF-205 - 727 1.5e-50 167.5 94.6 9 11 1e-07 0.00013 22.2 1.7 1 23 481 503 481 506 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 CTCF-205 - 727 1.5e-50 167.5 94.6 10 11 8.6e-10 1.1e-06 28.8 3.9 4 25 512 533 507 534 0.86 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 CTCF-205 - 727 1.5e-50 167.5 94.6 11 11 6.8e-05 0.087 13.3 0.8 3 26 539 566 538 566 0.79 Zinc-finger double domain zf-C2H2 PF00096.26 23 CTCF-205 - 727 3e-34 115.6 101.7 1 11 1.1e-06 0.0014 18.9 4.0 1 23 266 288 266 288 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 CTCF-205 - 727 3e-34 115.6 101.7 2 11 9.8e-07 0.0013 19.1 4.0 1 23 294 316 294 316 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 CTCF-205 - 727 3e-34 115.6 101.7 3 11 6.9e-08 8.8e-05 22.7 1.1 1 23 322 345 322 345 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 CTCF-205 - 727 3e-34 115.6 101.7 4 11 3.1e-05 0.039 14.4 0.8 1 23 351 373 351 373 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 CTCF-205 - 727 3e-34 115.6 101.7 5 11 2.5e-06 0.0032 17.8 3.0 1 23 379 401 379 401 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 CTCF-205 - 727 3e-34 115.6 101.7 6 11 0.00033 0.43 11.1 1.8 1 23 407 430 407 430 0.95 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 CTCF-205 - 727 3e-34 115.6 101.7 7 11 1.1e-05 0.013 15.9 1.7 1 23 437 460 437 460 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 CTCF-205 - 727 3e-34 115.6 101.7 8 11 0.0001 0.13 12.7 1.7 2 23 468 489 467 489 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 CTCF-205 - 727 3e-34 115.6 101.7 9 11 0.0018 2.3 8.9 5.7 1 23 495 517 495 517 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 CTCF-205 - 727 3e-34 115.6 101.7 10 11 6.1e-05 0.078 13.5 4.4 1 23 523 546 523 546 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 CTCF-205 - 727 3e-34 115.6 101.7 11 11 1.6e-06 0.002 18.5 0.3 1 19 555 573 555 575 0.96 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 CTCF-205 - 727 2.9e-26 89.9 96.1 1 11 2.7e-05 0.035 15.0 3.0 1 23 266 288 266 289 0.89 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 CTCF-205 - 727 2.9e-26 89.9 96.1 2 11 3.8e-06 0.0048 17.6 2.7 1 23 294 316 294 317 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 CTCF-205 - 727 2.9e-26 89.9 96.1 3 11 3.9e-05 0.05 14.5 0.9 1 24 322 345 322 345 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 CTCF-205 - 727 2.9e-26 89.9 96.1 4 11 0.00035 0.44 11.5 0.8 1 23 351 373 351 374 0.86 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 CTCF-205 - 727 2.9e-26 89.9 96.1 5 11 7.1e-06 0.0091 16.8 1.9 1 23 379 401 379 402 0.84 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 CTCF-205 - 727 2.9e-26 89.9 96.1 6 11 0.00036 0.46 11.5 1.3 1 24 407 430 407 430 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 CTCF-205 - 727 2.9e-26 89.9 96.1 7 11 0.00012 0.15 13.0 1.6 1 24 437 460 437 460 0.97 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 CTCF-205 - 727 2.9e-26 89.9 96.1 8 11 1.2e-05 0.015 16.1 2.0 2 23 468 489 467 490 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 CTCF-205 - 727 2.9e-26 89.9 96.1 9 11 0.037 47 5.2 3.9 1 23 495 517 495 518 0.70 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 CTCF-205 - 727 2.9e-26 89.9 96.1 10 11 4.7e-05 0.06 14.2 3.5 1 24 523 546 523 546 0.82 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 CTCF-205 - 727 2.9e-26 89.9 96.1 11 11 0.00012 0.15 13.0 0.8 1 20 555 574 555 577 0.92 C2H2-type zinc finger zf-H2C2_5 PF13909.6 26 CTCF-205 - 727 2.7e-18 65.4 81.6 1 10 3.7e-07 0.00047 19.8 4.0 1 25 266 289 266 290 0.96 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 CTCF-205 - 727 2.7e-18 65.4 81.6 2 10 0.19 2.5e+02 1.5 0.5 16 26 309 318 307 318 0.93 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 CTCF-205 - 727 2.7e-18 65.4 81.6 3 10 0.013 17 5.3 2.1 1 25 322 346 322 347 0.95 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 CTCF-205 - 727 2.7e-18 65.4 81.6 4 10 8.3e-10 1.1e-06 28.3 0.6 1 26 351 375 351 375 0.98 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 CTCF-205 - 727 2.7e-18 65.4 81.6 5 10 7.4e-08 9.4e-05 22.1 3.3 1 26 379 403 379 403 0.98 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 CTCF-205 - 727 2.7e-18 65.4 81.6 6 10 0.029 37 4.2 0.5 12 25 418 431 417 432 0.90 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 CTCF-205 - 727 2.7e-18 65.4 81.6 7 10 2.1e-05 0.027 14.2 0.7 1 25 437 461 437 461 0.95 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 CTCF-205 - 727 2.7e-18 65.4 81.6 8 10 0.28 3.6e+02 1.0 0.3 2 7 468 473 468 490 0.93 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 CTCF-205 - 727 2.7e-18 65.4 81.6 9 10 2.2e-05 0.028 14.2 4.5 1 26 495 519 495 519 0.97 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 CTCF-205 - 727 2.7e-18 65.4 81.6 10 10 0.15 2e+02 1.9 3.0 1 24 523 546 523 548 0.72 C2H2-type zinc-finger domain zf-C2H2_jaz PF12171.8 27 CTCF-205 - 727 1.6e-08 34.6 58.8 1 11 0.00018 0.23 11.8 0.9 2 24 266 288 265 289 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 CTCF-205 - 727 1.6e-08 34.6 58.8 2 11 3.3e-05 0.042 14.1 0.1 2 24 294 316 293 317 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 CTCF-205 - 727 1.6e-08 34.6 58.8 3 11 0.018 23 5.4 0.0 2 21 322 341 321 342 0.91 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 CTCF-205 - 727 1.6e-08 34.6 58.8 4 11 0.039 49 4.4 0.3 2 24 351 373 350 373 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 CTCF-205 - 727 1.6e-08 34.6 58.8 5 11 0.45 5.7e+02 1.0 0.4 2 24 379 401 378 402 0.87 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 CTCF-205 - 727 1.6e-08 34.6 58.8 6 11 0.06 77 3.8 0.2 2 21 407 426 406 429 0.90 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 CTCF-205 - 727 1.6e-08 34.6 58.8 7 11 0.078 99 3.4 0.1 2 22 437 457 436 459 0.87 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 CTCF-205 - 727 1.6e-08 34.6 58.8 8 11 0.00029 0.37 11.1 3.2 4 25 469 490 467 490 0.96 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 CTCF-205 - 727 1.6e-08 34.6 58.8 9 11 1 1.3e+03 -0.1 3.1 2 24 495 517 494 517 0.91 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 CTCF-205 - 727 1.6e-08 34.6 58.8 10 11 9.2e-05 0.12 12.7 1.0 2 22 523 543 522 543 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 CTCF-205 - 727 1.6e-08 34.6 58.8 11 11 1.9 2.4e+03 -1.0 0.1 3 20 556 573 555 573 0.77 Zinc-finger double-stranded RNA-binding # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/CTCF-205.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/CTCF-205.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/CTCF-205.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/CTCF-205.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/CTCF-205.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:53:40 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/CTCF-206.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/CTCF-206.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/CTCF-206.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/CTCF-206.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/CTCF-206.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:53:40 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 CTCF-207 - 152 2.8e-09 37.0 28.7 1 4 0.00016 0.15 12.6 3.4 10 25 9 24 5 25 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 CTCF-207 - 152 2.8e-09 37.0 28.7 2 4 0.002 1.9 9.0 1.9 4 21 31 50 29 53 0.80 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 CTCF-207 - 152 2.8e-09 37.0 28.7 3 4 0.032 30 5.3 0.6 5 24 62 83 59 84 0.70 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 CTCF-207 - 152 2.8e-09 37.0 28.7 4 4 1.8e-08 1.7e-05 25.0 1.7 1 24 88 111 88 113 0.91 Zinc-finger double domain zf-C2H2 PF00096.26 23 CTCF-207 - 152 4.3e-09 36.3 28.4 1 4 5.9e-05 0.056 13.9 1.8 1 23 14 37 14 37 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 CTCF-207 - 152 4.3e-09 36.3 28.4 2 4 1.9e-06 0.0018 18.7 1.7 1 23 44 67 44 67 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 CTCF-207 - 152 4.3e-09 36.3 28.4 3 4 1.9e-05 0.018 15.5 1.7 2 23 75 96 74 96 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 CTCF-207 - 152 4.3e-09 36.3 28.4 4 4 0.052 49 4.7 1.4 1 12 102 113 102 118 0.85 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 CTCF-207 - 152 1.2e-07 32.0 34.5 1 5 2.7 2.5e+03 -0.2 0.5 3 10 2 7 1 11 0.79 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 CTCF-207 - 152 1.2e-07 32.0 34.5 2 5 6.2e-05 0.058 14.2 1.3 1 24 14 37 14 37 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 CTCF-207 - 152 1.2e-07 32.0 34.5 3 5 2e-05 0.019 15.8 1.6 1 24 44 67 44 67 0.97 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 CTCF-207 - 152 1.2e-07 32.0 34.5 4 5 2.1e-06 0.002 18.8 2.0 2 23 75 96 74 97 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 CTCF-207 - 152 1.2e-07 32.0 34.5 5 5 0.15 1.4e+02 3.7 1.3 1 12 102 111 102 117 0.80 C2H2-type zinc finger # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/CTCF-207.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/CTCF-207.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/CTCF-207.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/CTCF-207.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/CTCF-207.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:53:40 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 CTCF-208 - 638 2.8e-51 169.8 94.6 1 11 0.013 16 6.1 3.0 11 23 262 274 256 276 0.78 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 CTCF-208 - 638 2.8e-51 169.8 94.6 2 11 8.8e-10 1.1e-06 28.7 3.0 1 25 280 304 280 305 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 CTCF-208 - 638 2.8e-51 169.8 94.6 3 11 3.2e-09 4.1e-06 27.0 0.6 2 26 309 333 309 333 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 CTCF-208 - 638 2.8e-51 169.8 94.6 4 11 5.2e-08 6.7e-05 23.1 2.8 2 24 337 360 336 361 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 CTCF-208 - 638 2.8e-51 169.8 94.6 5 11 6.8e-12 8.6e-09 35.4 0.6 2 23 366 387 365 389 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 CTCF-208 - 638 2.8e-51 169.8 94.6 6 11 1.4e-10 1.7e-07 31.3 3.1 2 25 394 417 393 418 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 CTCF-208 - 638 2.8e-51 169.8 94.6 7 11 0.0095 12 6.5 1.9 4 21 424 443 422 446 0.80 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 CTCF-208 - 638 2.8e-51 169.8 94.6 8 11 0.15 1.9e+02 2.7 0.6 5 24 455 476 452 477 0.69 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 CTCF-208 - 638 2.8e-51 169.8 94.6 9 11 8.6e-08 0.00011 22.5 1.7 1 23 481 503 481 506 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 CTCF-208 - 638 2.8e-51 169.8 94.6 10 11 7.4e-10 9.4e-07 29.0 3.9 4 25 512 533 507 534 0.86 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 CTCF-208 - 638 2.8e-51 169.8 94.6 11 11 5.8e-05 0.075 13.5 0.8 3 26 539 566 538 566 0.79 Zinc-finger double domain zf-C2H2 PF00096.26 23 CTCF-208 - 638 5.5e-35 117.9 101.7 1 11 9.7e-07 0.0012 19.1 4.0 1 23 266 288 266 288 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 CTCF-208 - 638 5.5e-35 117.9 101.7 2 11 8.4e-07 0.0011 19.3 4.0 1 23 294 316 294 316 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 CTCF-208 - 638 5.5e-35 117.9 101.7 3 11 5.9e-08 7.6e-05 23.0 1.1 1 23 322 345 322 345 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 CTCF-208 - 638 5.5e-35 117.9 101.7 4 11 2.6e-05 0.034 14.6 0.8 1 23 351 373 351 373 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 CTCF-208 - 638 5.5e-35 117.9 101.7 5 11 2.1e-06 0.0027 18.1 3.0 1 23 379 401 379 401 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 CTCF-208 - 638 5.5e-35 117.9 101.7 6 11 0.00029 0.37 11.4 1.8 1 23 407 430 407 430 0.95 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 CTCF-208 - 638 5.5e-35 117.9 101.7 7 11 9e-06 0.012 16.1 1.7 1 23 437 460 437 460 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 CTCF-208 - 638 5.5e-35 117.9 101.7 8 11 9e-05 0.12 12.9 1.7 2 23 468 489 467 489 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 CTCF-208 - 638 5.5e-35 117.9 101.7 9 11 0.0015 1.9 9.1 5.7 1 23 495 517 495 517 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 CTCF-208 - 638 5.5e-35 117.9 101.7 10 11 5.2e-05 0.067 13.7 4.4 1 23 523 546 523 546 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 CTCF-208 - 638 5.5e-35 117.9 101.7 11 11 1.4e-06 0.0017 18.7 0.3 1 19 555 573 555 575 0.96 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 CTCF-208 - 638 5e-27 92.2 96.1 1 11 2.3e-05 0.03 15.2 3.0 1 23 266 288 266 289 0.89 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 CTCF-208 - 638 5e-27 92.2 96.1 2 11 3.2e-06 0.0041 17.8 2.7 1 23 294 316 294 317 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 CTCF-208 - 638 5e-27 92.2 96.1 3 11 3.3e-05 0.042 14.7 0.9 1 24 322 345 322 345 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 CTCF-208 - 638 5e-27 92.2 96.1 4 11 0.0003 0.38 11.7 0.8 1 23 351 373 351 374 0.86 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 CTCF-208 - 638 5e-27 92.2 96.1 5 11 6.1e-06 0.0078 17.0 1.9 1 23 379 401 379 402 0.84 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 CTCF-208 - 638 5e-27 92.2 96.1 6 11 0.00031 0.39 11.7 1.3 1 24 407 430 407 430 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 CTCF-208 - 638 5e-27 92.2 96.1 7 11 9.9e-05 0.13 13.2 1.6 1 24 437 460 437 460 0.97 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 CTCF-208 - 638 5e-27 92.2 96.1 8 11 1e-05 0.013 16.3 2.0 2 23 468 489 467 490 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 CTCF-208 - 638 5e-27 92.2 96.1 9 11 0.032 41 5.4 3.9 1 23 495 517 495 518 0.70 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 CTCF-208 - 638 5e-27 92.2 96.1 10 11 4e-05 0.052 14.4 3.5 1 24 523 546 523 546 0.82 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 CTCF-208 - 638 5e-27 92.2 96.1 11 11 9.9e-05 0.13 13.2 0.8 1 20 555 574 555 577 0.92 C2H2-type zinc finger zf-H2C2_5 PF13909.6 26 CTCF-208 - 638 6.1e-19 67.5 81.7 1 10 3.2e-07 0.00041 20.1 4.0 1 25 266 289 266 290 0.96 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 CTCF-208 - 638 6.1e-19 67.5 81.7 2 10 0.17 2.2e+02 1.7 0.5 16 26 309 318 307 318 0.93 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 CTCF-208 - 638 6.1e-19 67.5 81.7 3 10 0.011 14 5.5 2.1 1 25 322 346 322 347 0.95 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 CTCF-208 - 638 6.1e-19 67.5 81.7 4 10 7.2e-10 9.2e-07 28.5 0.6 1 26 351 375 351 375 0.98 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 CTCF-208 - 638 6.1e-19 67.5 81.7 5 10 6.3e-08 8.1e-05 22.3 3.3 1 26 379 403 379 403 0.98 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 CTCF-208 - 638 6.1e-19 67.5 81.7 6 10 0.025 32 4.4 0.5 12 25 418 431 417 432 0.90 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 CTCF-208 - 638 6.1e-19 67.5 81.7 7 10 1.8e-05 0.023 14.4 0.7 1 25 437 461 437 461 0.95 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 CTCF-208 - 638 6.1e-19 67.5 81.7 8 10 0.24 3.1e+02 1.2 0.4 2 7 468 473 468 490 0.93 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 CTCF-208 - 638 6.1e-19 67.5 81.7 9 10 1.9e-05 0.024 14.4 4.5 1 26 495 519 495 519 0.97 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 CTCF-208 - 638 6.1e-19 67.5 81.7 10 10 0.13 1.7e+02 2.1 3.0 1 24 523 546 523 548 0.73 C2H2-type zinc-finger domain zf-C2H2_jaz PF12171.8 27 CTCF-208 - 638 2.3e-09 37.3 58.3 1 11 0.00015 0.2 12.0 0.9 2 24 266 288 265 289 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 CTCF-208 - 638 2.3e-09 37.3 58.3 2 11 2.8e-05 0.036 14.3 0.1 2 24 294 316 293 317 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 CTCF-208 - 638 2.3e-09 37.3 58.3 3 11 0.016 20 5.6 0.0 2 21 322 341 321 342 0.91 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 CTCF-208 - 638 2.3e-09 37.3 58.3 4 11 0.033 42 4.6 0.3 2 24 351 373 350 373 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 CTCF-208 - 638 2.3e-09 37.3 58.3 5 11 0.38 4.9e+02 1.2 0.4 2 24 379 401 378 402 0.87 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 CTCF-208 - 638 2.3e-09 37.3 58.3 6 11 0.052 66 4.0 0.2 2 21 407 426 406 429 0.90 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 CTCF-208 - 638 2.3e-09 37.3 58.3 7 11 0.067 86 3.6 0.1 2 22 437 457 436 459 0.87 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 CTCF-208 - 638 2.3e-09 37.3 58.3 8 11 0.00025 0.32 11.3 3.2 4 25 469 490 467 490 0.96 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 CTCF-208 - 638 2.3e-09 37.3 58.3 9 11 0.86 1.1e+03 0.1 3.1 2 24 495 517 494 517 0.91 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 CTCF-208 - 638 2.3e-09 37.3 58.3 10 11 7.9e-05 0.1 12.9 1.0 2 22 523 543 522 543 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 CTCF-208 - 638 2.3e-09 37.3 58.3 11 11 1.4 1.7e+03 -0.6 0.1 2 20 555 573 554 573 0.79 Zinc-finger double-stranded RNA-binding # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/CTCF-208.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/CTCF-208.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/CTCF-208.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/CTCF-208.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/CTCF-208.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:53:41 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 CTCF-209 - 727 1.5e-50 167.5 94.6 1 11 0.015 19 5.9 3.0 11 23 262 274 256 276 0.78 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 CTCF-209 - 727 1.5e-50 167.5 94.6 2 11 1e-09 1.3e-06 28.5 3.0 1 25 280 304 280 305 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 CTCF-209 - 727 1.5e-50 167.5 94.6 3 11 3.7e-09 4.8e-06 26.8 0.6 2 26 309 333 309 333 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 CTCF-209 - 727 1.5e-50 167.5 94.6 4 11 6.1e-08 7.8e-05 22.9 2.8 2 24 337 360 336 361 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 CTCF-209 - 727 1.5e-50 167.5 94.6 5 11 7.9e-12 1e-08 35.2 0.6 2 23 366 387 365 389 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 CTCF-209 - 727 1.5e-50 167.5 94.6 6 11 1.6e-10 2e-07 31.1 3.1 2 25 394 417 393 418 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 CTCF-209 - 727 1.5e-50 167.5 94.6 7 11 0.011 14 6.3 1.9 4 21 424 443 422 446 0.80 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 CTCF-209 - 727 1.5e-50 167.5 94.6 8 11 0.18 2.3e+02 2.5 0.6 5 24 455 476 452 477 0.69 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 CTCF-209 - 727 1.5e-50 167.5 94.6 9 11 1e-07 0.00013 22.2 1.7 1 23 481 503 481 506 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 CTCF-209 - 727 1.5e-50 167.5 94.6 10 11 8.6e-10 1.1e-06 28.8 3.9 4 25 512 533 507 534 0.86 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 CTCF-209 - 727 1.5e-50 167.5 94.6 11 11 6.8e-05 0.087 13.3 0.8 3 26 539 566 538 566 0.79 Zinc-finger double domain zf-C2H2 PF00096.26 23 CTCF-209 - 727 3e-34 115.6 101.7 1 11 1.1e-06 0.0014 18.9 4.0 1 23 266 288 266 288 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 CTCF-209 - 727 3e-34 115.6 101.7 2 11 9.8e-07 0.0013 19.1 4.0 1 23 294 316 294 316 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 CTCF-209 - 727 3e-34 115.6 101.7 3 11 6.9e-08 8.8e-05 22.7 1.1 1 23 322 345 322 345 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 CTCF-209 - 727 3e-34 115.6 101.7 4 11 3.1e-05 0.039 14.4 0.8 1 23 351 373 351 373 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 CTCF-209 - 727 3e-34 115.6 101.7 5 11 2.5e-06 0.0032 17.8 3.0 1 23 379 401 379 401 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 CTCF-209 - 727 3e-34 115.6 101.7 6 11 0.00033 0.43 11.1 1.8 1 23 407 430 407 430 0.95 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 CTCF-209 - 727 3e-34 115.6 101.7 7 11 1.1e-05 0.013 15.9 1.7 1 23 437 460 437 460 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 CTCF-209 - 727 3e-34 115.6 101.7 8 11 0.0001 0.13 12.7 1.7 2 23 468 489 467 489 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 CTCF-209 - 727 3e-34 115.6 101.7 9 11 0.0018 2.3 8.9 5.7 1 23 495 517 495 517 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 CTCF-209 - 727 3e-34 115.6 101.7 10 11 6.1e-05 0.078 13.5 4.4 1 23 523 546 523 546 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 CTCF-209 - 727 3e-34 115.6 101.7 11 11 1.6e-06 0.002 18.5 0.3 1 19 555 573 555 575 0.96 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 CTCF-209 - 727 2.9e-26 89.9 96.1 1 11 2.7e-05 0.035 15.0 3.0 1 23 266 288 266 289 0.89 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 CTCF-209 - 727 2.9e-26 89.9 96.1 2 11 3.8e-06 0.0048 17.6 2.7 1 23 294 316 294 317 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 CTCF-209 - 727 2.9e-26 89.9 96.1 3 11 3.9e-05 0.05 14.5 0.9 1 24 322 345 322 345 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 CTCF-209 - 727 2.9e-26 89.9 96.1 4 11 0.00035 0.44 11.5 0.8 1 23 351 373 351 374 0.86 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 CTCF-209 - 727 2.9e-26 89.9 96.1 5 11 7.1e-06 0.0091 16.8 1.9 1 23 379 401 379 402 0.84 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 CTCF-209 - 727 2.9e-26 89.9 96.1 6 11 0.00036 0.46 11.5 1.3 1 24 407 430 407 430 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 CTCF-209 - 727 2.9e-26 89.9 96.1 7 11 0.00012 0.15 13.0 1.6 1 24 437 460 437 460 0.97 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 CTCF-209 - 727 2.9e-26 89.9 96.1 8 11 1.2e-05 0.015 16.1 2.0 2 23 468 489 467 490 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 CTCF-209 - 727 2.9e-26 89.9 96.1 9 11 0.037 47 5.2 3.9 1 23 495 517 495 518 0.70 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 CTCF-209 - 727 2.9e-26 89.9 96.1 10 11 4.7e-05 0.06 14.2 3.5 1 24 523 546 523 546 0.82 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 CTCF-209 - 727 2.9e-26 89.9 96.1 11 11 0.00012 0.15 13.0 0.8 1 20 555 574 555 577 0.92 C2H2-type zinc finger zf-H2C2_5 PF13909.6 26 CTCF-209 - 727 2.7e-18 65.4 81.6 1 10 3.7e-07 0.00047 19.8 4.0 1 25 266 289 266 290 0.96 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 CTCF-209 - 727 2.7e-18 65.4 81.6 2 10 0.19 2.5e+02 1.5 0.5 16 26 309 318 307 318 0.93 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 CTCF-209 - 727 2.7e-18 65.4 81.6 3 10 0.013 17 5.3 2.1 1 25 322 346 322 347 0.95 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 CTCF-209 - 727 2.7e-18 65.4 81.6 4 10 8.3e-10 1.1e-06 28.3 0.6 1 26 351 375 351 375 0.98 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 CTCF-209 - 727 2.7e-18 65.4 81.6 5 10 7.4e-08 9.4e-05 22.1 3.3 1 26 379 403 379 403 0.98 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 CTCF-209 - 727 2.7e-18 65.4 81.6 6 10 0.029 37 4.2 0.5 12 25 418 431 417 432 0.90 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 CTCF-209 - 727 2.7e-18 65.4 81.6 7 10 2.1e-05 0.027 14.2 0.7 1 25 437 461 437 461 0.95 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 CTCF-209 - 727 2.7e-18 65.4 81.6 8 10 0.28 3.6e+02 1.0 0.3 2 7 468 473 468 490 0.93 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 CTCF-209 - 727 2.7e-18 65.4 81.6 9 10 2.2e-05 0.028 14.2 4.5 1 26 495 519 495 519 0.97 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 CTCF-209 - 727 2.7e-18 65.4 81.6 10 10 0.15 2e+02 1.9 3.0 1 24 523 546 523 548 0.72 C2H2-type zinc-finger domain zf-C2H2_jaz PF12171.8 27 CTCF-209 - 727 1.6e-08 34.6 58.8 1 11 0.00018 0.23 11.8 0.9 2 24 266 288 265 289 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 CTCF-209 - 727 1.6e-08 34.6 58.8 2 11 3.3e-05 0.042 14.1 0.1 2 24 294 316 293 317 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 CTCF-209 - 727 1.6e-08 34.6 58.8 3 11 0.018 23 5.4 0.0 2 21 322 341 321 342 0.91 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 CTCF-209 - 727 1.6e-08 34.6 58.8 4 11 0.039 49 4.4 0.3 2 24 351 373 350 373 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 CTCF-209 - 727 1.6e-08 34.6 58.8 5 11 0.45 5.7e+02 1.0 0.4 2 24 379 401 378 402 0.87 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 CTCF-209 - 727 1.6e-08 34.6 58.8 6 11 0.06 77 3.8 0.2 2 21 407 426 406 429 0.90 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 CTCF-209 - 727 1.6e-08 34.6 58.8 7 11 0.078 99 3.4 0.1 2 22 437 457 436 459 0.87 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 CTCF-209 - 727 1.6e-08 34.6 58.8 8 11 0.00029 0.37 11.1 3.2 4 25 469 490 467 490 0.96 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 CTCF-209 - 727 1.6e-08 34.6 58.8 9 11 1 1.3e+03 -0.1 3.1 2 24 495 517 494 517 0.91 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 CTCF-209 - 727 1.6e-08 34.6 58.8 10 11 9.2e-05 0.12 12.7 1.0 2 22 523 543 522 543 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 CTCF-209 - 727 1.6e-08 34.6 58.8 11 11 1.9 2.4e+03 -1.0 0.1 3 20 556 573 555 573 0.77 Zinc-finger double-stranded RNA-binding # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/CTCF-209.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/CTCF-209.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/CTCF-209.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/CTCF-209.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/CTCF-209.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:53:41 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/CTCF-210.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/CTCF-210.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/CTCF-210.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/CTCF-210.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/CTCF-210.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:53:42 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 CTCF-211 - 334 6.3e-18 64.3 47.7 1 6 0.00031 0.29 11.6 2.9 10 25 9 24 5 25 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 CTCF-211 - 334 6.3e-18 64.3 47.7 2 6 0.0059 5.6 7.6 1.9 4 21 31 50 29 53 0.80 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 CTCF-211 - 334 6.3e-18 64.3 47.7 3 6 0.094 89 3.8 0.6 5 24 62 83 59 84 0.70 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 CTCF-211 - 334 6.3e-18 64.3 47.7 4 6 5.3e-08 5e-05 23.5 1.7 1 23 88 110 88 113 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 CTCF-211 - 334 6.3e-18 64.3 47.7 5 6 4.5e-10 4.3e-07 30.1 3.9 4 25 119 140 114 141 0.86 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 CTCF-211 - 334 6.3e-18 64.3 47.7 6 6 3.5e-05 0.033 14.6 0.8 3 26 146 173 145 173 0.79 Zinc-finger double domain zf-C2H2 PF00096.26 23 CTCF-211 - 334 1.1e-16 60.3 51.4 1 6 0.00018 0.17 12.4 1.8 1 23 14 37 14 37 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 CTCF-211 - 334 1.1e-16 60.3 51.4 2 6 5.6e-06 0.0052 17.2 1.7 1 23 44 67 44 67 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 CTCF-211 - 334 1.1e-16 60.3 51.4 3 6 5.6e-05 0.053 14.0 1.7 2 23 75 96 74 96 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 CTCF-211 - 334 1.1e-16 60.3 51.4 4 6 0.00094 0.89 10.1 5.7 1 23 102 124 102 124 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 CTCF-211 - 334 1.1e-16 60.3 51.4 5 6 3.2e-05 0.03 14.8 4.4 1 23 130 153 130 153 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 CTCF-211 - 334 1.1e-16 60.3 51.4 6 6 8.5e-07 0.0008 19.7 0.3 1 19 162 180 162 182 0.96 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 CTCF-211 - 334 4.4e-12 45.7 57.1 1 7 8.2 7.8e+03 -1.7 0.7 3 10 2 7 1 10 0.79 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 CTCF-211 - 334 4.4e-12 45.7 57.1 2 7 0.00019 0.18 12.8 1.3 1 24 14 37 14 37 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 CTCF-211 - 334 4.4e-12 45.7 57.1 3 7 6e-05 0.057 14.3 1.6 1 24 44 67 44 67 0.97 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 CTCF-211 - 334 4.4e-12 45.7 57.1 4 7 6.2e-06 0.0059 17.4 2.0 2 23 75 96 74 97 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 CTCF-211 - 334 4.4e-12 45.7 57.1 5 7 0.019 18 6.5 3.9 1 23 102 124 102 125 0.70 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 CTCF-211 - 334 4.4e-12 45.7 57.1 6 7 2.5e-05 0.023 15.5 3.5 1 24 130 153 130 153 0.82 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 CTCF-211 - 334 4.4e-12 45.7 57.1 7 7 6.1e-05 0.058 14.3 0.8 1 20 162 181 162 184 0.92 C2H2-type zinc finger Actin_micro PF17003.5 369 CTCF-211 - 334 2.1e-10 40.3 0.9 1 3 0.01 9.8 5.2 9.0 220 256 8 43 5 96 0.66 Putative actin-like family Actin_micro PF17003.5 369 CTCF-211 - 334 2.1e-10 40.3 0.9 2 3 0.08 75 2.3 6.6 216 247 92 123 78 128 0.83 Putative actin-like family Actin_micro PF17003.5 369 CTCF-211 - 334 2.1e-10 40.3 0.9 3 3 0.0005 0.47 9.6 0.0 223 274 127 293 122 301 0.84 Putative actin-like family # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/CTCF-211.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/CTCF-211.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/CTCF-211.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/CTCF-211.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/CTCF-211.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:53:42 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 CTCF-212 - 725 1.4e-50 167.5 94.6 1 11 0.014 19 5.9 3.0 11 23 262 274 256 276 0.78 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 CTCF-212 - 725 1.4e-50 167.5 94.6 2 11 9.5e-10 1.3e-06 28.5 3.0 1 25 280 304 280 305 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 CTCF-212 - 725 1.4e-50 167.5 94.6 3 11 3.5e-09 4.8e-06 26.8 0.6 2 26 309 333 309 333 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 CTCF-212 - 725 1.4e-50 167.5 94.6 4 11 5.6e-08 7.8e-05 22.9 2.8 2 24 337 360 336 361 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 CTCF-212 - 725 1.4e-50 167.5 94.6 5 11 7.3e-12 1e-08 35.2 0.6 2 23 366 387 365 389 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 CTCF-212 - 725 1.4e-50 167.5 94.6 6 11 1.5e-10 2e-07 31.1 3.1 2 25 394 417 393 418 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 CTCF-212 - 725 1.4e-50 167.5 94.6 7 11 0.01 14 6.3 1.9 4 21 424 443 422 446 0.80 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 CTCF-212 - 725 1.4e-50 167.5 94.6 8 11 0.16 2.2e+02 2.5 0.6 5 24 455 476 452 477 0.69 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 CTCF-212 - 725 1.4e-50 167.5 94.6 9 11 9.3e-08 0.00013 22.2 1.7 1 23 481 503 481 506 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 CTCF-212 - 725 1.4e-50 167.5 94.6 10 11 7.9e-10 1.1e-06 28.8 3.9 4 25 512 533 507 534 0.86 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 CTCF-212 - 725 1.4e-50 167.5 94.6 11 11 6.3e-05 0.087 13.3 0.8 3 26 539 566 538 566 0.79 Zinc-finger double domain zf-C2H2 PF00096.26 23 CTCF-212 - 725 2.9e-34 115.6 101.7 1 11 1e-06 0.0014 18.9 4.0 1 23 266 288 266 288 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 CTCF-212 - 725 2.9e-34 115.6 101.7 2 11 9e-07 0.0012 19.1 4.0 1 23 294 316 294 316 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 CTCF-212 - 725 2.9e-34 115.6 101.7 3 11 6.4e-08 8.8e-05 22.8 1.1 1 23 322 345 322 345 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 CTCF-212 - 725 2.9e-34 115.6 101.7 4 11 2.8e-05 0.039 14.4 0.8 1 23 351 373 351 373 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 CTCF-212 - 725 2.9e-34 115.6 101.7 5 11 2.3e-06 0.0032 17.9 3.0 1 23 379 401 379 401 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 CTCF-212 - 725 2.9e-34 115.6 101.7 6 11 0.00031 0.42 11.2 1.8 1 23 407 430 407 430 0.95 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 CTCF-212 - 725 2.9e-34 115.6 101.7 7 11 9.7e-06 0.013 15.9 1.7 1 23 437 460 437 460 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 CTCF-212 - 725 2.9e-34 115.6 101.7 8 11 9.7e-05 0.13 12.7 1.7 2 23 468 489 467 489 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 CTCF-212 - 725 2.9e-34 115.6 101.7 9 11 0.0016 2.3 8.9 5.7 1 23 495 517 495 517 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 CTCF-212 - 725 2.9e-34 115.6 101.7 10 11 5.6e-05 0.078 13.5 4.4 1 23 523 546 523 546 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 CTCF-212 - 725 2.9e-34 115.6 101.7 11 11 1.5e-06 0.002 18.5 0.3 1 19 555 573 555 575 0.96 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 CTCF-212 - 725 2.8e-26 89.9 96.1 1 11 2.5e-05 0.035 15.0 3.0 1 23 266 288 266 289 0.89 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 CTCF-212 - 725 2.8e-26 89.9 96.1 2 11 3.5e-06 0.0048 17.6 2.7 1 23 294 316 294 317 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 CTCF-212 - 725 2.8e-26 89.9 96.1 3 11 3.6e-05 0.049 14.5 0.9 1 24 322 345 322 345 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 CTCF-212 - 725 2.8e-26 89.9 96.1 4 11 0.00032 0.44 11.5 0.8 1 23 351 373 351 374 0.86 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 CTCF-212 - 725 2.8e-26 89.9 96.1 5 11 6.6e-06 0.0091 16.8 1.9 1 23 379 401 379 402 0.84 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 CTCF-212 - 725 2.8e-26 89.9 96.1 6 11 0.00033 0.46 11.5 1.3 1 24 407 430 407 430 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 CTCF-212 - 725 2.8e-26 89.9 96.1 7 11 0.00011 0.15 13.0 1.6 1 24 437 460 437 460 0.97 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 CTCF-212 - 725 2.8e-26 89.9 96.1 8 11 1.1e-05 0.015 16.1 2.0 2 23 468 489 467 490 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 CTCF-212 - 725 2.8e-26 89.9 96.1 9 11 0.034 47 5.2 3.9 1 23 495 517 495 518 0.70 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 CTCF-212 - 725 2.8e-26 89.9 96.1 10 11 4.4e-05 0.06 14.2 3.5 1 24 523 546 523 546 0.82 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 CTCF-212 - 725 2.8e-26 89.9 96.1 11 11 0.00011 0.15 13.0 0.8 1 20 555 574 555 577 0.92 C2H2-type zinc finger zf-H2C2_5 PF13909.6 26 CTCF-212 - 725 2.6e-18 65.4 81.6 1 10 3.4e-07 0.00047 19.8 4.0 1 25 266 289 266 290 0.96 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 CTCF-212 - 725 2.6e-18 65.4 81.6 2 10 0.18 2.5e+02 1.6 0.5 16 26 309 318 307 318 0.93 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 CTCF-212 - 725 2.6e-18 65.4 81.6 3 10 0.012 17 5.3 2.1 1 25 322 346 322 347 0.95 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 CTCF-212 - 725 2.6e-18 65.4 81.6 4 10 7.7e-10 1.1e-06 28.3 0.6 1 26 351 375 351 375 0.98 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 CTCF-212 - 725 2.6e-18 65.4 81.6 5 10 6.8e-08 9.4e-05 22.1 3.3 1 26 379 403 379 403 0.98 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 CTCF-212 - 725 2.6e-18 65.4 81.6 6 10 0.027 37 4.2 0.5 12 25 418 431 417 432 0.90 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 CTCF-212 - 725 2.6e-18 65.4 81.6 7 10 1.9e-05 0.027 14.2 0.7 1 25 437 461 437 461 0.95 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 CTCF-212 - 725 2.6e-18 65.4 81.6 8 10 0.26 3.6e+02 1.1 0.3 2 7 468 473 468 490 0.93 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 CTCF-212 - 725 2.6e-18 65.4 81.6 9 10 2e-05 0.028 14.2 4.5 1 26 495 519 495 519 0.97 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 CTCF-212 - 725 2.6e-18 65.4 81.6 10 10 0.14 2e+02 1.9 3.0 1 24 523 546 523 548 0.72 C2H2-type zinc-finger domain zf-C2H2_jaz PF12171.8 27 CTCF-212 - 725 1.6e-08 34.6 58.8 1 11 0.00017 0.23 11.8 0.9 2 24 266 288 265 289 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 CTCF-212 - 725 1.6e-08 34.6 58.8 2 11 3.1e-05 0.042 14.1 0.1 2 24 294 316 293 317 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 CTCF-212 - 725 1.6e-08 34.6 58.8 3 11 0.017 23 5.4 0.0 2 21 322 341 321 342 0.91 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 CTCF-212 - 725 1.6e-08 34.6 58.8 4 11 0.036 49 4.4 0.3 2 24 351 373 350 373 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 CTCF-212 - 725 1.6e-08 34.6 58.8 5 11 0.41 5.7e+02 1.0 0.4 2 24 379 401 378 402 0.87 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 CTCF-212 - 725 1.6e-08 34.6 58.8 6 11 0.055 77 3.8 0.2 2 21 407 426 406 429 0.90 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 CTCF-212 - 725 1.6e-08 34.6 58.8 7 11 0.072 99 3.4 0.1 2 22 437 457 436 459 0.87 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 CTCF-212 - 725 1.6e-08 34.6 58.8 8 11 0.00027 0.37 11.1 3.2 4 25 469 490 467 490 0.96 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 CTCF-212 - 725 1.6e-08 34.6 58.8 9 11 0.93 1.3e+03 -0.1 3.1 2 24 495 517 494 517 0.91 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 CTCF-212 - 725 1.6e-08 34.6 58.8 10 11 8.5e-05 0.12 12.7 1.0 2 22 523 543 522 543 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 CTCF-212 - 725 1.6e-08 34.6 58.8 11 11 1.8 2.4e+03 -1.0 0.1 3 20 556 573 555 573 0.77 Zinc-finger double-stranded RNA-binding # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/CTCF-212.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/CTCF-212.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/CTCF-212.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/CTCF-212.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/CTCF-212.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:53:43 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 CTCF-213 - 429 2.1e-38 129.0 67.1 1 8 3.9e-08 4.1e-05 23.8 2.8 2 24 9 32 8 33 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 CTCF-213 - 429 2.1e-38 129.0 67.1 2 8 5.1e-12 5.4e-09 36.1 0.6 2 23 38 59 37 61 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 CTCF-213 - 429 2.1e-38 129.0 67.1 3 8 1e-10 1.1e-07 32.0 3.1 2 25 66 89 65 90 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 CTCF-213 - 429 2.1e-38 129.0 67.1 4 8 0.0072 7.6 7.2 1.9 4 21 96 115 94 118 0.80 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 CTCF-213 - 429 2.1e-38 129.0 67.1 5 8 0.19 2e+02 2.7 1.2 5 24 157 178 156 179 0.68 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 CTCF-213 - 429 2.1e-38 129.0 67.1 6 8 6.5e-08 6.9e-05 23.1 1.7 1 23 183 205 183 208 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 CTCF-213 - 429 2.1e-38 129.0 67.1 7 8 5.6e-10 5.9e-07 29.6 3.9 4 25 214 235 209 236 0.86 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 CTCF-213 - 429 2.1e-38 129.0 67.1 8 8 4.4e-05 0.046 14.2 0.8 3 26 241 268 240 268 0.79 Zinc-finger double domain zf-C2H2 PF00096.26 23 CTCF-213 - 429 2e-20 72.0 75.8 1 9 0.013 14 6.4 0.1 9 23 2 17 1 17 0.92 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 CTCF-213 - 429 2e-20 72.0 75.8 2 9 2e-05 0.021 15.3 0.8 1 23 23 45 23 45 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 CTCF-213 - 429 2e-20 72.0 75.8 3 9 1.6e-06 0.0017 18.7 3.0 1 23 51 73 51 73 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 CTCF-213 - 429 2e-20 72.0 75.8 4 9 0.00022 0.23 12.0 1.8 1 23 79 102 79 102 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 CTCF-213 - 429 2e-20 72.0 75.8 5 9 0.0045 4.7 7.8 0.1 1 16 109 124 109 126 0.93 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 CTCF-213 - 429 2e-20 72.0 75.8 6 9 6.8e-05 0.072 13.6 1.7 2 23 170 191 169 191 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 CTCF-213 - 429 2e-20 72.0 75.8 7 9 0.0012 1.2 9.7 5.7 1 23 197 219 197 219 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 CTCF-213 - 429 2e-20 72.0 75.8 8 9 3.9e-05 0.042 14.3 4.4 1 23 225 248 225 248 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 CTCF-213 - 429 2e-20 72.0 75.8 9 9 1e-06 0.0011 19.3 0.3 1 19 257 275 257 277 0.96 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 CTCF-213 - 429 3.1e-16 58.7 71.0 1 9 0.33 3.5e+02 2.5 0.1 10 24 3 17 1 17 0.90 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 CTCF-213 - 429 3.1e-16 58.7 71.0 2 9 0.00022 0.23 12.4 0.8 1 23 23 45 23 46 0.86 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 CTCF-213 - 429 3.1e-16 58.7 71.0 3 9 4.6e-06 0.0048 17.6 1.9 1 23 51 73 51 74 0.84 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 CTCF-213 - 429 3.1e-16 58.7 71.0 4 9 0.00023 0.24 12.3 1.3 1 24 79 102 79 102 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 CTCF-213 - 429 3.1e-16 58.7 71.0 5 9 0.037 39 5.5 0.1 1 16 109 124 109 126 0.80 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 CTCF-213 - 429 3.1e-16 58.7 71.0 6 9 7.6e-06 0.0081 16.9 2.0 2 23 170 191 169 192 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 CTCF-213 - 429 3.1e-16 58.7 71.0 7 9 0.024 25 6.1 3.9 1 23 197 219 197 220 0.70 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 CTCF-213 - 429 3.1e-16 58.7 71.0 8 9 3e-05 0.032 15.1 3.5 1 24 225 248 225 248 0.82 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 CTCF-213 - 429 3.1e-16 58.7 71.0 9 9 7.5e-05 0.079 13.8 0.8 1 20 257 276 257 279 0.92 C2H2-type zinc finger zf-H2C2_5 PF13909.6 26 CTCF-213 - 429 8e-11 41.5 68.1 1 10 0.27 2.8e+02 1.4 0.9 12 25 5 18 4 19 0.89 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 CTCF-213 - 429 8e-11 41.5 68.1 2 10 5.4e-10 5.7e-07 29.2 0.6 1 26 23 47 23 47 0.98 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 CTCF-213 - 429 8e-11 41.5 68.1 3 10 4.8e-08 5.1e-05 22.9 3.3 1 26 51 75 51 75 0.98 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 CTCF-213 - 429 8e-11 41.5 68.1 4 10 0.019 21 5.0 0.5 12 25 90 103 89 104 0.90 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 CTCF-213 - 429 8e-11 41.5 68.1 5 10 0.025 26 4.7 0.0 1 15 109 123 109 126 0.71 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 CTCF-213 - 429 8e-11 41.5 68.1 6 10 1.7 1.7e+03 -1.2 0.6 19 25 157 163 157 163 0.93 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 CTCF-213 - 429 8e-11 41.5 68.1 7 10 0.19 2e+02 1.9 0.4 2 7 170 175 170 192 0.93 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 CTCF-213 - 429 8e-11 41.5 68.1 8 10 1.4e-05 0.015 15.0 4.5 1 26 197 221 197 221 0.97 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 CTCF-213 - 429 8e-11 41.5 68.1 9 10 0.1 1.1e+02 2.7 3.0 1 24 225 248 225 250 0.73 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 CTCF-213 - 429 8e-11 41.5 68.1 10 10 9.7 1e+04 -3.6 0.1 12 19 268 275 267 275 0.83 C2H2-type zinc-finger domain Actin_micro PF17003.5 369 CTCF-213 - 429 1.9e-09 37.2 8.9 1 3 0.0041 4.3 6.4 3.8 222 250 19 47 8 75 0.74 Putative actin-like family Actin_micro PF17003.5 369 CTCF-213 - 429 1.9e-09 37.2 8.9 2 3 0.00094 0.99 8.5 3.8 218 256 71 108 62 138 0.73 Putative actin-like family Actin_micro PF17003.5 369 CTCF-213 - 429 1.9e-09 37.2 8.9 3 3 9.4e-05 0.099 11.8 0.0 217 272 188 386 178 396 0.62 Putative actin-like family # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/CTCF-213.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/CTCF-213.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/CTCF-213.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/CTCF-213.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/CTCF-213.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:53:43 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 CTCF-214 - 727 1.5e-50 167.5 94.6 1 11 0.015 19 5.9 3.0 11 23 262 274 256 276 0.78 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 CTCF-214 - 727 1.5e-50 167.5 94.6 2 11 1e-09 1.3e-06 28.5 3.0 1 25 280 304 280 305 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 CTCF-214 - 727 1.5e-50 167.5 94.6 3 11 3.7e-09 4.8e-06 26.8 0.6 2 26 309 333 309 333 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 CTCF-214 - 727 1.5e-50 167.5 94.6 4 11 6.1e-08 7.8e-05 22.9 2.8 2 24 337 360 336 361 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 CTCF-214 - 727 1.5e-50 167.5 94.6 5 11 7.9e-12 1e-08 35.2 0.6 2 23 366 387 365 389 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 CTCF-214 - 727 1.5e-50 167.5 94.6 6 11 1.6e-10 2e-07 31.1 3.1 2 25 394 417 393 418 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 CTCF-214 - 727 1.5e-50 167.5 94.6 7 11 0.011 14 6.3 1.9 4 21 424 443 422 446 0.80 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 CTCF-214 - 727 1.5e-50 167.5 94.6 8 11 0.18 2.3e+02 2.5 0.6 5 24 455 476 452 477 0.69 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 CTCF-214 - 727 1.5e-50 167.5 94.6 9 11 1e-07 0.00013 22.2 1.7 1 23 481 503 481 506 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 CTCF-214 - 727 1.5e-50 167.5 94.6 10 11 8.6e-10 1.1e-06 28.8 3.9 4 25 512 533 507 534 0.86 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 CTCF-214 - 727 1.5e-50 167.5 94.6 11 11 6.8e-05 0.087 13.3 0.8 3 26 539 566 538 566 0.79 Zinc-finger double domain zf-C2H2 PF00096.26 23 CTCF-214 - 727 3e-34 115.6 101.7 1 11 1.1e-06 0.0014 18.9 4.0 1 23 266 288 266 288 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 CTCF-214 - 727 3e-34 115.6 101.7 2 11 9.8e-07 0.0013 19.1 4.0 1 23 294 316 294 316 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 CTCF-214 - 727 3e-34 115.6 101.7 3 11 6.9e-08 8.8e-05 22.7 1.1 1 23 322 345 322 345 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 CTCF-214 - 727 3e-34 115.6 101.7 4 11 3.1e-05 0.039 14.4 0.8 1 23 351 373 351 373 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 CTCF-214 - 727 3e-34 115.6 101.7 5 11 2.5e-06 0.0032 17.8 3.0 1 23 379 401 379 401 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 CTCF-214 - 727 3e-34 115.6 101.7 6 11 0.00033 0.43 11.1 1.8 1 23 407 430 407 430 0.95 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 CTCF-214 - 727 3e-34 115.6 101.7 7 11 1.1e-05 0.013 15.9 1.7 1 23 437 460 437 460 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 CTCF-214 - 727 3e-34 115.6 101.7 8 11 0.0001 0.13 12.7 1.7 2 23 468 489 467 489 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 CTCF-214 - 727 3e-34 115.6 101.7 9 11 0.0018 2.3 8.9 5.7 1 23 495 517 495 517 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 CTCF-214 - 727 3e-34 115.6 101.7 10 11 6.1e-05 0.078 13.5 4.4 1 23 523 546 523 546 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 CTCF-214 - 727 3e-34 115.6 101.7 11 11 1.6e-06 0.002 18.5 0.3 1 19 555 573 555 575 0.96 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 CTCF-214 - 727 2.9e-26 89.9 96.1 1 11 2.7e-05 0.035 15.0 3.0 1 23 266 288 266 289 0.89 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 CTCF-214 - 727 2.9e-26 89.9 96.1 2 11 3.8e-06 0.0048 17.6 2.7 1 23 294 316 294 317 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 CTCF-214 - 727 2.9e-26 89.9 96.1 3 11 3.9e-05 0.05 14.5 0.9 1 24 322 345 322 345 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 CTCF-214 - 727 2.9e-26 89.9 96.1 4 11 0.00035 0.44 11.5 0.8 1 23 351 373 351 374 0.86 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 CTCF-214 - 727 2.9e-26 89.9 96.1 5 11 7.1e-06 0.0091 16.8 1.9 1 23 379 401 379 402 0.84 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 CTCF-214 - 727 2.9e-26 89.9 96.1 6 11 0.00036 0.46 11.5 1.3 1 24 407 430 407 430 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 CTCF-214 - 727 2.9e-26 89.9 96.1 7 11 0.00012 0.15 13.0 1.6 1 24 437 460 437 460 0.97 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 CTCF-214 - 727 2.9e-26 89.9 96.1 8 11 1.2e-05 0.015 16.1 2.0 2 23 468 489 467 490 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 CTCF-214 - 727 2.9e-26 89.9 96.1 9 11 0.037 47 5.2 3.9 1 23 495 517 495 518 0.70 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 CTCF-214 - 727 2.9e-26 89.9 96.1 10 11 4.7e-05 0.06 14.2 3.5 1 24 523 546 523 546 0.82 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 CTCF-214 - 727 2.9e-26 89.9 96.1 11 11 0.00012 0.15 13.0 0.8 1 20 555 574 555 577 0.92 C2H2-type zinc finger zf-H2C2_5 PF13909.6 26 CTCF-214 - 727 2.7e-18 65.4 81.6 1 10 3.7e-07 0.00047 19.8 4.0 1 25 266 289 266 290 0.96 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 CTCF-214 - 727 2.7e-18 65.4 81.6 2 10 0.19 2.5e+02 1.5 0.5 16 26 309 318 307 318 0.93 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 CTCF-214 - 727 2.7e-18 65.4 81.6 3 10 0.013 17 5.3 2.1 1 25 322 346 322 347 0.95 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 CTCF-214 - 727 2.7e-18 65.4 81.6 4 10 8.3e-10 1.1e-06 28.3 0.6 1 26 351 375 351 375 0.98 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 CTCF-214 - 727 2.7e-18 65.4 81.6 5 10 7.4e-08 9.4e-05 22.1 3.3 1 26 379 403 379 403 0.98 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 CTCF-214 - 727 2.7e-18 65.4 81.6 6 10 0.029 37 4.2 0.5 12 25 418 431 417 432 0.90 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 CTCF-214 - 727 2.7e-18 65.4 81.6 7 10 2.1e-05 0.027 14.2 0.7 1 25 437 461 437 461 0.95 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 CTCF-214 - 727 2.7e-18 65.4 81.6 8 10 0.28 3.6e+02 1.0 0.3 2 7 468 473 468 490 0.93 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 CTCF-214 - 727 2.7e-18 65.4 81.6 9 10 2.2e-05 0.028 14.2 4.5 1 26 495 519 495 519 0.97 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 CTCF-214 - 727 2.7e-18 65.4 81.6 10 10 0.15 2e+02 1.9 3.0 1 24 523 546 523 548 0.72 C2H2-type zinc-finger domain zf-C2H2_jaz PF12171.8 27 CTCF-214 - 727 1.6e-08 34.6 58.8 1 11 0.00018 0.23 11.8 0.9 2 24 266 288 265 289 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 CTCF-214 - 727 1.6e-08 34.6 58.8 2 11 3.3e-05 0.042 14.1 0.1 2 24 294 316 293 317 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 CTCF-214 - 727 1.6e-08 34.6 58.8 3 11 0.018 23 5.4 0.0 2 21 322 341 321 342 0.91 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 CTCF-214 - 727 1.6e-08 34.6 58.8 4 11 0.039 49 4.4 0.3 2 24 351 373 350 373 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 CTCF-214 - 727 1.6e-08 34.6 58.8 5 11 0.45 5.7e+02 1.0 0.4 2 24 379 401 378 402 0.87 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 CTCF-214 - 727 1.6e-08 34.6 58.8 6 11 0.06 77 3.8 0.2 2 21 407 426 406 429 0.90 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 CTCF-214 - 727 1.6e-08 34.6 58.8 7 11 0.078 99 3.4 0.1 2 22 437 457 436 459 0.87 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 CTCF-214 - 727 1.6e-08 34.6 58.8 8 11 0.00029 0.37 11.1 3.2 4 25 469 490 467 490 0.96 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 CTCF-214 - 727 1.6e-08 34.6 58.8 9 11 1 1.3e+03 -0.1 3.1 2 24 495 517 494 517 0.91 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 CTCF-214 - 727 1.6e-08 34.6 58.8 10 11 9.2e-05 0.12 12.7 1.0 2 22 523 543 522 543 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 CTCF-214 - 727 1.6e-08 34.6 58.8 11 11 1.9 2.4e+03 -1.0 0.1 3 20 556 573 555 573 0.77 Zinc-finger double-stranded RNA-binding # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/CTCF-214.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/CTCF-214.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/CTCF-214.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/CTCF-214.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/CTCF-214.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:53:43 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 CTCF-215 - 727 1.5e-50 167.5 94.6 1 11 0.015 19 5.9 3.0 11 23 262 274 256 276 0.78 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 CTCF-215 - 727 1.5e-50 167.5 94.6 2 11 1e-09 1.3e-06 28.5 3.0 1 25 280 304 280 305 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 CTCF-215 - 727 1.5e-50 167.5 94.6 3 11 3.7e-09 4.8e-06 26.8 0.6 2 26 309 333 309 333 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 CTCF-215 - 727 1.5e-50 167.5 94.6 4 11 6.1e-08 7.8e-05 22.9 2.8 2 24 337 360 336 361 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 CTCF-215 - 727 1.5e-50 167.5 94.6 5 11 7.9e-12 1e-08 35.2 0.6 2 23 366 387 365 389 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 CTCF-215 - 727 1.5e-50 167.5 94.6 6 11 1.6e-10 2e-07 31.1 3.1 2 25 394 417 393 418 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 CTCF-215 - 727 1.5e-50 167.5 94.6 7 11 0.011 14 6.3 1.9 4 21 424 443 422 446 0.80 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 CTCF-215 - 727 1.5e-50 167.5 94.6 8 11 0.18 2.3e+02 2.5 0.6 5 24 455 476 452 477 0.69 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 CTCF-215 - 727 1.5e-50 167.5 94.6 9 11 1e-07 0.00013 22.2 1.7 1 23 481 503 481 506 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 CTCF-215 - 727 1.5e-50 167.5 94.6 10 11 8.6e-10 1.1e-06 28.8 3.9 4 25 512 533 507 534 0.86 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 CTCF-215 - 727 1.5e-50 167.5 94.6 11 11 6.8e-05 0.087 13.3 0.8 3 26 539 566 538 566 0.79 Zinc-finger double domain zf-C2H2 PF00096.26 23 CTCF-215 - 727 3e-34 115.6 101.7 1 11 1.1e-06 0.0014 18.9 4.0 1 23 266 288 266 288 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 CTCF-215 - 727 3e-34 115.6 101.7 2 11 9.8e-07 0.0013 19.1 4.0 1 23 294 316 294 316 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 CTCF-215 - 727 3e-34 115.6 101.7 3 11 6.9e-08 8.8e-05 22.7 1.1 1 23 322 345 322 345 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 CTCF-215 - 727 3e-34 115.6 101.7 4 11 3.1e-05 0.039 14.4 0.8 1 23 351 373 351 373 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 CTCF-215 - 727 3e-34 115.6 101.7 5 11 2.5e-06 0.0032 17.8 3.0 1 23 379 401 379 401 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 CTCF-215 - 727 3e-34 115.6 101.7 6 11 0.00033 0.43 11.1 1.8 1 23 407 430 407 430 0.95 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 CTCF-215 - 727 3e-34 115.6 101.7 7 11 1.1e-05 0.013 15.9 1.7 1 23 437 460 437 460 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 CTCF-215 - 727 3e-34 115.6 101.7 8 11 0.0001 0.13 12.7 1.7 2 23 468 489 467 489 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 CTCF-215 - 727 3e-34 115.6 101.7 9 11 0.0018 2.3 8.9 5.7 1 23 495 517 495 517 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 CTCF-215 - 727 3e-34 115.6 101.7 10 11 6.1e-05 0.078 13.5 4.4 1 23 523 546 523 546 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 CTCF-215 - 727 3e-34 115.6 101.7 11 11 1.6e-06 0.002 18.5 0.3 1 19 555 573 555 575 0.96 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 CTCF-215 - 727 2.9e-26 89.9 96.1 1 11 2.7e-05 0.035 15.0 3.0 1 23 266 288 266 289 0.89 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 CTCF-215 - 727 2.9e-26 89.9 96.1 2 11 3.8e-06 0.0048 17.6 2.7 1 23 294 316 294 317 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 CTCF-215 - 727 2.9e-26 89.9 96.1 3 11 3.9e-05 0.05 14.5 0.9 1 24 322 345 322 345 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 CTCF-215 - 727 2.9e-26 89.9 96.1 4 11 0.00035 0.44 11.5 0.8 1 23 351 373 351 374 0.86 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 CTCF-215 - 727 2.9e-26 89.9 96.1 5 11 7.1e-06 0.0091 16.8 1.9 1 23 379 401 379 402 0.84 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 CTCF-215 - 727 2.9e-26 89.9 96.1 6 11 0.00036 0.46 11.5 1.3 1 24 407 430 407 430 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 CTCF-215 - 727 2.9e-26 89.9 96.1 7 11 0.00012 0.15 13.0 1.6 1 24 437 460 437 460 0.97 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 CTCF-215 - 727 2.9e-26 89.9 96.1 8 11 1.2e-05 0.015 16.1 2.0 2 23 468 489 467 490 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 CTCF-215 - 727 2.9e-26 89.9 96.1 9 11 0.037 47 5.2 3.9 1 23 495 517 495 518 0.70 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 CTCF-215 - 727 2.9e-26 89.9 96.1 10 11 4.7e-05 0.06 14.2 3.5 1 24 523 546 523 546 0.82 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 CTCF-215 - 727 2.9e-26 89.9 96.1 11 11 0.00012 0.15 13.0 0.8 1 20 555 574 555 577 0.92 C2H2-type zinc finger zf-H2C2_5 PF13909.6 26 CTCF-215 - 727 2.7e-18 65.4 81.6 1 10 3.7e-07 0.00047 19.8 4.0 1 25 266 289 266 290 0.96 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 CTCF-215 - 727 2.7e-18 65.4 81.6 2 10 0.19 2.5e+02 1.5 0.5 16 26 309 318 307 318 0.93 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 CTCF-215 - 727 2.7e-18 65.4 81.6 3 10 0.013 17 5.3 2.1 1 25 322 346 322 347 0.95 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 CTCF-215 - 727 2.7e-18 65.4 81.6 4 10 8.3e-10 1.1e-06 28.3 0.6 1 26 351 375 351 375 0.98 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 CTCF-215 - 727 2.7e-18 65.4 81.6 5 10 7.4e-08 9.4e-05 22.1 3.3 1 26 379 403 379 403 0.98 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 CTCF-215 - 727 2.7e-18 65.4 81.6 6 10 0.029 37 4.2 0.5 12 25 418 431 417 432 0.90 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 CTCF-215 - 727 2.7e-18 65.4 81.6 7 10 2.1e-05 0.027 14.2 0.7 1 25 437 461 437 461 0.95 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 CTCF-215 - 727 2.7e-18 65.4 81.6 8 10 0.28 3.6e+02 1.0 0.3 2 7 468 473 468 490 0.93 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 CTCF-215 - 727 2.7e-18 65.4 81.6 9 10 2.2e-05 0.028 14.2 4.5 1 26 495 519 495 519 0.97 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 CTCF-215 - 727 2.7e-18 65.4 81.6 10 10 0.15 2e+02 1.9 3.0 1 24 523 546 523 548 0.72 C2H2-type zinc-finger domain zf-C2H2_jaz PF12171.8 27 CTCF-215 - 727 1.6e-08 34.6 58.8 1 11 0.00018 0.23 11.8 0.9 2 24 266 288 265 289 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 CTCF-215 - 727 1.6e-08 34.6 58.8 2 11 3.3e-05 0.042 14.1 0.1 2 24 294 316 293 317 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 CTCF-215 - 727 1.6e-08 34.6 58.8 3 11 0.018 23 5.4 0.0 2 21 322 341 321 342 0.91 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 CTCF-215 - 727 1.6e-08 34.6 58.8 4 11 0.039 49 4.4 0.3 2 24 351 373 350 373 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 CTCF-215 - 727 1.6e-08 34.6 58.8 5 11 0.45 5.7e+02 1.0 0.4 2 24 379 401 378 402 0.87 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 CTCF-215 - 727 1.6e-08 34.6 58.8 6 11 0.06 77 3.8 0.2 2 21 407 426 406 429 0.90 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 CTCF-215 - 727 1.6e-08 34.6 58.8 7 11 0.078 99 3.4 0.1 2 22 437 457 436 459 0.87 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 CTCF-215 - 727 1.6e-08 34.6 58.8 8 11 0.00029 0.37 11.1 3.2 4 25 469 490 467 490 0.96 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 CTCF-215 - 727 1.6e-08 34.6 58.8 9 11 1 1.3e+03 -0.1 3.1 2 24 495 517 494 517 0.91 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 CTCF-215 - 727 1.6e-08 34.6 58.8 10 11 9.2e-05 0.12 12.7 1.0 2 22 523 543 522 543 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 CTCF-215 - 727 1.6e-08 34.6 58.8 11 11 1.9 2.4e+03 -1.0 0.1 3 20 556 573 555 573 0.77 Zinc-finger double-stranded RNA-binding # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/CTCF-215.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/CTCF-215.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/CTCF-215.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/CTCF-215.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/CTCF-215.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:53:44 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 CTCF-216 - 397 3.6e-39 131.5 65.9 1 8 4e-08 3.8e-05 23.9 2.8 2 24 9 32 8 33 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 CTCF-216 - 397 3.6e-39 131.5 65.9 2 8 5.2e-12 4.9e-09 36.2 0.6 2 23 38 59 37 61 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 CTCF-216 - 397 3.6e-39 131.5 65.9 3 8 1e-10 9.8e-08 32.1 3.1 2 25 66 89 65 90 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 CTCF-216 - 397 3.6e-39 131.5 65.9 4 8 0.0073 6.9 7.3 1.9 4 21 96 115 94 118 0.80 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 CTCF-216 - 397 3.6e-39 131.5 65.9 5 8 0.12 1.1e+02 3.5 0.6 5 24 127 148 124 149 0.70 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 CTCF-216 - 397 3.6e-39 131.5 65.9 6 8 6.6e-08 6.2e-05 23.2 1.7 1 23 153 175 153 178 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 CTCF-216 - 397 3.6e-39 131.5 65.9 7 8 5.6e-10 5.3e-07 29.8 3.9 4 25 184 205 179 206 0.86 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 CTCF-216 - 397 3.6e-39 131.5 65.9 8 8 4.4e-05 0.042 14.3 0.8 3 26 211 238 210 238 0.79 Zinc-finger double domain zf-C2H2 PF00096.26 23 CTCF-216 - 397 1.9e-24 84.7 74.1 1 9 0.013 12 6.5 0.1 9 23 2 17 1 17 0.92 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 CTCF-216 - 397 1.9e-24 84.7 74.1 2 9 2e-05 0.019 15.4 0.8 1 23 23 45 23 45 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 CTCF-216 - 397 1.9e-24 84.7 74.1 3 9 1.6e-06 0.0015 18.8 3.0 1 23 51 73 51 73 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 CTCF-216 - 397 1.9e-24 84.7 74.1 4 9 0.00022 0.21 12.1 1.8 1 23 79 102 79 102 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 CTCF-216 - 397 1.9e-24 84.7 74.1 5 9 6.9e-06 0.0065 16.9 1.7 1 23 109 132 109 132 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 CTCF-216 - 397 1.9e-24 84.7 74.1 6 9 6.9e-05 0.065 13.7 1.7 2 23 140 161 139 161 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 CTCF-216 - 397 1.9e-24 84.7 74.1 7 9 0.0012 1.1 9.8 5.7 1 23 167 189 167 189 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 CTCF-216 - 397 1.9e-24 84.7 74.1 8 9 4e-05 0.038 14.5 4.4 1 23 195 218 195 218 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 CTCF-216 - 397 1.9e-24 84.7 74.1 9 9 1.1e-06 0.00099 19.4 0.3 1 19 227 245 227 247 0.96 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 CTCF-216 - 397 2.1e-19 68.5 71.4 1 9 0.34 3.2e+02 2.6 0.1 10 24 3 17 1 17 0.90 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 CTCF-216 - 397 2.1e-19 68.5 71.4 2 9 0.00023 0.21 12.5 0.8 1 23 23 45 23 46 0.86 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 CTCF-216 - 397 2.1e-19 68.5 71.4 3 9 4.6e-06 0.0044 17.8 1.9 1 23 51 73 51 74 0.84 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 CTCF-216 - 397 2.1e-19 68.5 71.4 4 9 0.00023 0.22 12.5 1.3 1 24 79 102 79 102 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 CTCF-216 - 397 2.1e-19 68.5 71.4 5 9 7.5e-05 0.071 14.0 1.6 1 24 109 132 109 132 0.97 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 CTCF-216 - 397 2.1e-19 68.5 71.4 6 9 7.8e-06 0.0073 17.1 2.0 2 23 140 161 139 162 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 CTCF-216 - 397 2.1e-19 68.5 71.4 7 9 0.024 23 6.2 3.9 1 23 167 189 167 190 0.70 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 CTCF-216 - 397 2.1e-19 68.5 71.4 8 9 3.1e-05 0.029 15.2 3.5 1 24 195 218 195 218 0.82 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 CTCF-216 - 397 2.1e-19 68.5 71.4 9 9 7.6e-05 0.072 14.0 0.8 1 20 227 246 227 249 0.92 C2H2-type zinc finger zf-H2C2_5 PF13909.6 26 CTCF-216 - 397 6.9e-15 54.5 65.5 1 9 0.27 2.6e+02 1.5 0.9 12 25 5 18 4 19 0.89 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 CTCF-216 - 397 6.9e-15 54.5 65.5 2 9 5.5e-10 5.2e-07 29.3 0.6 1 26 23 47 23 47 0.98 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 CTCF-216 - 397 6.9e-15 54.5 65.5 3 9 4.9e-08 4.6e-05 23.1 3.3 1 26 51 75 51 75 0.98 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 CTCF-216 - 397 6.9e-15 54.5 65.5 4 9 0.02 19 5.1 0.5 12 25 90 103 89 104 0.90 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 CTCF-216 - 397 6.9e-15 54.5 65.5 5 9 1.4e-05 0.013 15.2 0.7 1 25 109 133 109 133 0.95 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 CTCF-216 - 397 6.9e-15 54.5 65.5 6 9 0.19 1.8e+02 2.0 0.4 2 7 140 145 140 162 0.93 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 CTCF-216 - 397 6.9e-15 54.5 65.5 7 9 1.4e-05 0.014 15.2 4.5 1 26 167 191 167 191 0.97 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 CTCF-216 - 397 6.9e-15 54.5 65.5 8 9 0.11 99 2.8 3.0 1 24 195 218 195 220 0.73 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 CTCF-216 - 397 6.9e-15 54.5 65.5 9 9 9.9 9.4e+03 -3.5 0.1 12 19 238 245 237 245 0.83 C2H2-type zinc-finger domain # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/CTCF-216.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/CTCF-216.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/CTCF-216.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/CTCF-216.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/CTCF-216.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:53:44 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 CTCF-217 - 725 1.4e-50 167.5 94.6 1 11 0.014 19 5.9 3.0 11 23 262 274 256 276 0.78 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 CTCF-217 - 725 1.4e-50 167.5 94.6 2 11 9.5e-10 1.3e-06 28.5 3.0 1 25 280 304 280 305 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 CTCF-217 - 725 1.4e-50 167.5 94.6 3 11 3.5e-09 4.8e-06 26.8 0.6 2 26 309 333 309 333 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 CTCF-217 - 725 1.4e-50 167.5 94.6 4 11 5.6e-08 7.8e-05 22.9 2.8 2 24 337 360 336 361 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 CTCF-217 - 725 1.4e-50 167.5 94.6 5 11 7.3e-12 1e-08 35.2 0.6 2 23 366 387 365 389 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 CTCF-217 - 725 1.4e-50 167.5 94.6 6 11 1.5e-10 2e-07 31.1 3.1 2 25 394 417 393 418 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 CTCF-217 - 725 1.4e-50 167.5 94.6 7 11 0.01 14 6.3 1.9 4 21 424 443 422 446 0.80 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 CTCF-217 - 725 1.4e-50 167.5 94.6 8 11 0.16 2.2e+02 2.5 0.6 5 24 455 476 452 477 0.69 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 CTCF-217 - 725 1.4e-50 167.5 94.6 9 11 9.3e-08 0.00013 22.2 1.7 1 23 481 503 481 506 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 CTCF-217 - 725 1.4e-50 167.5 94.6 10 11 7.9e-10 1.1e-06 28.8 3.9 4 25 512 533 507 534 0.86 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 CTCF-217 - 725 1.4e-50 167.5 94.6 11 11 6.3e-05 0.087 13.3 0.8 3 26 539 566 538 566 0.79 Zinc-finger double domain zf-C2H2 PF00096.26 23 CTCF-217 - 725 2.9e-34 115.6 101.7 1 11 1e-06 0.0014 18.9 4.0 1 23 266 288 266 288 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 CTCF-217 - 725 2.9e-34 115.6 101.7 2 11 9e-07 0.0012 19.1 4.0 1 23 294 316 294 316 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 CTCF-217 - 725 2.9e-34 115.6 101.7 3 11 6.4e-08 8.8e-05 22.8 1.1 1 23 322 345 322 345 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 CTCF-217 - 725 2.9e-34 115.6 101.7 4 11 2.8e-05 0.039 14.4 0.8 1 23 351 373 351 373 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 CTCF-217 - 725 2.9e-34 115.6 101.7 5 11 2.3e-06 0.0032 17.9 3.0 1 23 379 401 379 401 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 CTCF-217 - 725 2.9e-34 115.6 101.7 6 11 0.00031 0.42 11.2 1.8 1 23 407 430 407 430 0.95 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 CTCF-217 - 725 2.9e-34 115.6 101.7 7 11 9.7e-06 0.013 15.9 1.7 1 23 437 460 437 460 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 CTCF-217 - 725 2.9e-34 115.6 101.7 8 11 9.7e-05 0.13 12.7 1.7 2 23 468 489 467 489 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 CTCF-217 - 725 2.9e-34 115.6 101.7 9 11 0.0016 2.3 8.9 5.7 1 23 495 517 495 517 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 CTCF-217 - 725 2.9e-34 115.6 101.7 10 11 5.6e-05 0.078 13.5 4.4 1 23 523 546 523 546 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 CTCF-217 - 725 2.9e-34 115.6 101.7 11 11 1.5e-06 0.002 18.5 0.3 1 19 555 573 555 575 0.96 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 CTCF-217 - 725 2.8e-26 89.9 96.1 1 11 2.5e-05 0.035 15.0 3.0 1 23 266 288 266 289 0.89 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 CTCF-217 - 725 2.8e-26 89.9 96.1 2 11 3.5e-06 0.0048 17.6 2.7 1 23 294 316 294 317 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 CTCF-217 - 725 2.8e-26 89.9 96.1 3 11 3.6e-05 0.049 14.5 0.9 1 24 322 345 322 345 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 CTCF-217 - 725 2.8e-26 89.9 96.1 4 11 0.00032 0.44 11.5 0.8 1 23 351 373 351 374 0.86 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 CTCF-217 - 725 2.8e-26 89.9 96.1 5 11 6.6e-06 0.0091 16.8 1.9 1 23 379 401 379 402 0.84 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 CTCF-217 - 725 2.8e-26 89.9 96.1 6 11 0.00033 0.46 11.5 1.3 1 24 407 430 407 430 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 CTCF-217 - 725 2.8e-26 89.9 96.1 7 11 0.00011 0.15 13.0 1.6 1 24 437 460 437 460 0.97 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 CTCF-217 - 725 2.8e-26 89.9 96.1 8 11 1.1e-05 0.015 16.1 2.0 2 23 468 489 467 490 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 CTCF-217 - 725 2.8e-26 89.9 96.1 9 11 0.034 47 5.2 3.9 1 23 495 517 495 518 0.70 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 CTCF-217 - 725 2.8e-26 89.9 96.1 10 11 4.4e-05 0.06 14.2 3.5 1 24 523 546 523 546 0.82 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 CTCF-217 - 725 2.8e-26 89.9 96.1 11 11 0.00011 0.15 13.0 0.8 1 20 555 574 555 577 0.92 C2H2-type zinc finger zf-H2C2_5 PF13909.6 26 CTCF-217 - 725 2.6e-18 65.4 81.6 1 10 3.4e-07 0.00047 19.8 4.0 1 25 266 289 266 290 0.96 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 CTCF-217 - 725 2.6e-18 65.4 81.6 2 10 0.18 2.5e+02 1.6 0.5 16 26 309 318 307 318 0.93 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 CTCF-217 - 725 2.6e-18 65.4 81.6 3 10 0.012 17 5.3 2.1 1 25 322 346 322 347 0.95 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 CTCF-217 - 725 2.6e-18 65.4 81.6 4 10 7.7e-10 1.1e-06 28.3 0.6 1 26 351 375 351 375 0.98 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 CTCF-217 - 725 2.6e-18 65.4 81.6 5 10 6.8e-08 9.4e-05 22.1 3.3 1 26 379 403 379 403 0.98 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 CTCF-217 - 725 2.6e-18 65.4 81.6 6 10 0.027 37 4.2 0.5 12 25 418 431 417 432 0.90 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 CTCF-217 - 725 2.6e-18 65.4 81.6 7 10 1.9e-05 0.027 14.2 0.7 1 25 437 461 437 461 0.95 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 CTCF-217 - 725 2.6e-18 65.4 81.6 8 10 0.26 3.6e+02 1.1 0.3 2 7 468 473 468 490 0.93 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 CTCF-217 - 725 2.6e-18 65.4 81.6 9 10 2e-05 0.028 14.2 4.5 1 26 495 519 495 519 0.97 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 CTCF-217 - 725 2.6e-18 65.4 81.6 10 10 0.14 2e+02 1.9 3.0 1 24 523 546 523 548 0.72 C2H2-type zinc-finger domain zf-C2H2_jaz PF12171.8 27 CTCF-217 - 725 1.6e-08 34.6 58.8 1 11 0.00017 0.23 11.8 0.9 2 24 266 288 265 289 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 CTCF-217 - 725 1.6e-08 34.6 58.8 2 11 3.1e-05 0.042 14.1 0.1 2 24 294 316 293 317 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 CTCF-217 - 725 1.6e-08 34.6 58.8 3 11 0.017 23 5.4 0.0 2 21 322 341 321 342 0.91 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 CTCF-217 - 725 1.6e-08 34.6 58.8 4 11 0.036 49 4.4 0.3 2 24 351 373 350 373 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 CTCF-217 - 725 1.6e-08 34.6 58.8 5 11 0.41 5.7e+02 1.0 0.4 2 24 379 401 378 402 0.87 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 CTCF-217 - 725 1.6e-08 34.6 58.8 6 11 0.055 77 3.8 0.2 2 21 407 426 406 429 0.90 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 CTCF-217 - 725 1.6e-08 34.6 58.8 7 11 0.072 99 3.4 0.1 2 22 437 457 436 459 0.87 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 CTCF-217 - 725 1.6e-08 34.6 58.8 8 11 0.00027 0.37 11.1 3.2 4 25 469 490 467 490 0.96 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 CTCF-217 - 725 1.6e-08 34.6 58.8 9 11 0.93 1.3e+03 -0.1 3.1 2 24 495 517 494 517 0.91 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 CTCF-217 - 725 1.6e-08 34.6 58.8 10 11 8.5e-05 0.12 12.7 1.0 2 22 523 543 522 543 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 CTCF-217 - 725 1.6e-08 34.6 58.8 11 11 1.8 2.4e+03 -1.0 0.1 3 20 556 573 555 573 0.77 Zinc-finger double-stranded RNA-binding # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/CTCF-217.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/CTCF-217.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/CTCF-217.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/CTCF-217.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/CTCF-217.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:53:45 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 CTCFL-201 - 663 7.4e-43 143.1 100.0 1 11 0.43 1.1e+03 0.3 0.1 14 23 256 265 247 268 0.71 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 CTCFL-201 - 663 7.4e-43 143.1 100.0 2 11 1.1e-09 2.9e-06 27.5 5.9 2 25 272 295 271 296 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 CTCFL-201 - 663 7.4e-43 143.1 100.0 3 11 2.4e-08 6.2e-05 23.2 0.3 2 26 300 324 300 324 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 CTCFL-201 - 663 7.4e-43 143.1 100.0 4 11 1.5e-07 0.00038 20.8 4.1 2 24 328 351 327 352 0.90 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 CTCFL-201 - 663 7.4e-43 143.1 100.0 5 11 9.4e-09 2.4e-05 24.5 2.6 2 23 357 378 356 380 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 CTCFL-201 - 663 7.4e-43 143.1 100.0 6 11 6.6e-10 1.7e-06 28.2 5.2 2 25 385 408 384 409 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 CTCFL-201 - 663 7.4e-43 143.1 100.0 7 11 0.0024 6.2 7.4 1.3 5 21 416 434 413 435 0.79 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 CTCFL-201 - 663 7.4e-43 143.1 100.0 8 11 0.16 4e+02 1.7 0.3 5 24 446 467 445 468 0.73 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 CTCFL-201 - 663 7.4e-43 143.1 100.0 9 11 8.8e-07 0.0023 18.3 6.3 1 25 472 496 472 497 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 CTCFL-201 - 663 7.4e-43 143.1 100.0 10 11 1.3e-09 3.4e-06 27.2 3.9 2 25 501 524 500 525 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 CTCFL-201 - 663 7.4e-43 143.1 100.0 11 11 4.3e-06 0.011 16.1 0.8 2 25 529 556 529 557 0.84 Zinc-finger double domain zf-C2H2 PF00096.26 23 CTCFL-201 - 663 2.7e-30 103.1 111.4 1 11 0.002 5.2 7.7 5.4 1 23 257 279 257 279 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 CTCFL-201 - 663 2.7e-30 103.1 111.4 2 11 0.00014 0.35 11.4 4.6 3 23 287 307 285 307 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 CTCFL-201 - 663 2.7e-30 103.1 111.4 3 11 1.8e-08 4.6e-05 23.6 0.8 1 23 313 336 313 336 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 CTCFL-201 - 663 2.7e-30 103.1 111.4 4 11 4e-05 0.1 13.1 1.2 1 23 342 364 342 364 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 CTCFL-201 - 663 2.7e-30 103.1 111.4 5 11 1.5e-05 0.037 14.5 5.8 1 23 370 392 370 392 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 CTCFL-201 - 663 2.7e-30 103.1 111.4 6 11 9.2e-06 0.024 15.1 3.5 1 23 398 421 398 421 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 CTCFL-201 - 663 2.7e-30 103.1 111.4 7 11 9.3e-06 0.024 15.1 0.3 1 23 428 451 428 451 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 CTCFL-201 - 663 2.7e-30 103.1 111.4 8 11 3.1e-05 0.08 13.4 1.7 2 23 459 480 458 480 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 CTCFL-201 - 663 2.7e-30 103.1 111.4 9 11 4.2e-05 0.11 13.0 8.3 1 23 486 508 486 508 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 CTCFL-201 - 663 2.7e-30 103.1 111.4 10 11 1.7e-05 0.044 14.2 5.4 1 23 514 537 514 537 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 CTCFL-201 - 663 2.7e-30 103.1 111.4 11 11 2.5e-07 0.00064 20.0 1.0 1 19 546 564 546 567 0.96 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 CTCFL-201 - 663 1.2e-23 81.8 105.8 1 11 0.00014 0.37 11.8 3.7 1 23 257 279 257 280 0.88 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 CTCFL-201 - 663 1.2e-23 81.8 105.8 2 11 4.1e-05 0.1 13.5 3.3 2 23 286 307 285 308 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 CTCFL-201 - 663 1.2e-23 81.8 105.8 3 11 1.6e-05 0.04 14.7 0.5 1 24 313 336 313 336 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 CTCFL-201 - 663 1.2e-23 81.8 105.8 4 11 6.8e-05 0.17 12.8 1.3 1 23 342 364 342 365 0.90 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 CTCFL-201 - 663 1.2e-23 81.8 105.8 5 11 1.2e-05 0.03 15.2 4.3 1 23 370 392 370 393 0.84 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 CTCFL-201 - 663 1.2e-23 81.8 105.8 6 11 0.00012 0.3 12.0 2.7 1 24 398 421 398 421 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 CTCFL-201 - 663 1.2e-23 81.8 105.8 7 11 7.8e-05 0.2 12.6 0.2 1 24 428 451 428 451 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 CTCFL-201 - 663 1.2e-23 81.8 105.8 8 11 1.9e-06 0.0048 17.6 2.0 2 23 459 480 458 481 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 CTCFL-201 - 663 1.2e-23 81.8 105.8 9 11 0.0013 3.4 8.7 6.6 1 23 486 508 486 509 0.84 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 CTCFL-201 - 663 1.2e-23 81.8 105.8 10 11 0.00054 1.4 10.0 4.9 1 24 514 537 514 537 0.90 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 CTCFL-201 - 663 1.2e-23 81.8 105.8 11 11 0.00028 0.73 10.8 2.9 1 21 546 566 546 568 0.92 C2H2-type zinc finger zf-H2C2_5 PF13909.6 26 CTCFL-201 - 663 5.7e-09 35.6 29.4 1 11 0.00032 0.83 9.5 5.0 1 25 257 280 257 281 0.94 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 CTCFL-201 - 663 5.7e-09 35.6 29.4 2 11 0.075 1.9e+02 1.9 0.4 16 26 300 309 298 309 0.94 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 CTCFL-201 - 663 5.7e-09 35.6 29.4 3 11 0.0078 20 5.1 2.4 1 25 313 337 313 338 0.96 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 CTCFL-201 - 663 5.7e-09 35.6 29.4 4 11 2.8e-08 7.1e-05 22.5 1.2 1 26 342 366 342 366 0.98 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 CTCFL-201 - 663 5.7e-09 35.6 29.4 5 11 5e-08 0.00013 21.7 6.0 1 26 370 394 370 394 0.97 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 CTCFL-201 - 663 5.7e-09 35.6 29.4 6 11 0.062 1.6e+02 2.2 0.1 12 25 409 422 408 423 0.86 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 CTCFL-201 - 663 5.7e-09 35.6 29.4 7 11 0.00071 1.8 8.4 0.5 1 24 428 451 428 452 0.95 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 CTCFL-201 - 663 5.7e-09 35.6 29.4 8 11 5.3 1.4e+04 -4.0 6.1 2 24 459 480 458 482 0.61 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 CTCFL-201 - 663 5.7e-09 35.6 29.4 9 11 2.3e-07 0.00058 19.6 7.1 1 26 486 510 486 510 0.98 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 CTCFL-201 - 663 5.7e-09 35.6 29.4 10 11 7 1.8e+04 -4.7 3.8 1 6 546 551 546 551 0.91 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 CTCFL-201 - 663 5.7e-09 35.6 29.4 11 11 1.5 3.8e+03 -2.3 0.5 15 21 560 566 560 567 0.86 C2H2-type zinc-finger domain # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/CTCFL-201.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/CTCFL-201.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/CTCFL-201.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/CTCFL-201.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/CTCFL-201.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:53:45 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 CTCFL-202 - 663 7.4e-43 143.1 100.0 1 11 0.43 1.1e+03 0.3 0.1 14 23 256 265 247 268 0.71 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 CTCFL-202 - 663 7.4e-43 143.1 100.0 2 11 1.1e-09 2.9e-06 27.5 5.9 2 25 272 295 271 296 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 CTCFL-202 - 663 7.4e-43 143.1 100.0 3 11 2.4e-08 6.2e-05 23.2 0.3 2 26 300 324 300 324 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 CTCFL-202 - 663 7.4e-43 143.1 100.0 4 11 1.5e-07 0.00038 20.8 4.1 2 24 328 351 327 352 0.90 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 CTCFL-202 - 663 7.4e-43 143.1 100.0 5 11 9.4e-09 2.4e-05 24.5 2.6 2 23 357 378 356 380 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 CTCFL-202 - 663 7.4e-43 143.1 100.0 6 11 6.6e-10 1.7e-06 28.2 5.2 2 25 385 408 384 409 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 CTCFL-202 - 663 7.4e-43 143.1 100.0 7 11 0.0024 6.2 7.4 1.3 5 21 416 434 413 435 0.79 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 CTCFL-202 - 663 7.4e-43 143.1 100.0 8 11 0.16 4e+02 1.7 0.3 5 24 446 467 445 468 0.73 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 CTCFL-202 - 663 7.4e-43 143.1 100.0 9 11 8.8e-07 0.0023 18.3 6.3 1 25 472 496 472 497 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 CTCFL-202 - 663 7.4e-43 143.1 100.0 10 11 1.3e-09 3.4e-06 27.2 3.9 2 25 501 524 500 525 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 CTCFL-202 - 663 7.4e-43 143.1 100.0 11 11 4.3e-06 0.011 16.1 0.8 2 25 529 556 529 557 0.84 Zinc-finger double domain zf-C2H2 PF00096.26 23 CTCFL-202 - 663 2.7e-30 103.1 111.4 1 11 0.002 5.2 7.7 5.4 1 23 257 279 257 279 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 CTCFL-202 - 663 2.7e-30 103.1 111.4 2 11 0.00014 0.35 11.4 4.6 3 23 287 307 285 307 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 CTCFL-202 - 663 2.7e-30 103.1 111.4 3 11 1.8e-08 4.6e-05 23.6 0.8 1 23 313 336 313 336 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 CTCFL-202 - 663 2.7e-30 103.1 111.4 4 11 4e-05 0.1 13.1 1.2 1 23 342 364 342 364 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 CTCFL-202 - 663 2.7e-30 103.1 111.4 5 11 1.5e-05 0.037 14.5 5.8 1 23 370 392 370 392 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 CTCFL-202 - 663 2.7e-30 103.1 111.4 6 11 9.2e-06 0.024 15.1 3.5 1 23 398 421 398 421 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 CTCFL-202 - 663 2.7e-30 103.1 111.4 7 11 9.3e-06 0.024 15.1 0.3 1 23 428 451 428 451 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 CTCFL-202 - 663 2.7e-30 103.1 111.4 8 11 3.1e-05 0.08 13.4 1.7 2 23 459 480 458 480 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 CTCFL-202 - 663 2.7e-30 103.1 111.4 9 11 4.2e-05 0.11 13.0 8.3 1 23 486 508 486 508 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 CTCFL-202 - 663 2.7e-30 103.1 111.4 10 11 1.7e-05 0.044 14.2 5.4 1 23 514 537 514 537 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 CTCFL-202 - 663 2.7e-30 103.1 111.4 11 11 2.5e-07 0.00064 20.0 1.0 1 19 546 564 546 567 0.96 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 CTCFL-202 - 663 1.2e-23 81.8 105.8 1 11 0.00014 0.37 11.8 3.7 1 23 257 279 257 280 0.88 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 CTCFL-202 - 663 1.2e-23 81.8 105.8 2 11 4.1e-05 0.1 13.5 3.3 2 23 286 307 285 308 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 CTCFL-202 - 663 1.2e-23 81.8 105.8 3 11 1.6e-05 0.04 14.7 0.5 1 24 313 336 313 336 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 CTCFL-202 - 663 1.2e-23 81.8 105.8 4 11 6.8e-05 0.17 12.8 1.3 1 23 342 364 342 365 0.90 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 CTCFL-202 - 663 1.2e-23 81.8 105.8 5 11 1.2e-05 0.03 15.2 4.3 1 23 370 392 370 393 0.84 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 CTCFL-202 - 663 1.2e-23 81.8 105.8 6 11 0.00012 0.3 12.0 2.7 1 24 398 421 398 421 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 CTCFL-202 - 663 1.2e-23 81.8 105.8 7 11 7.8e-05 0.2 12.6 0.2 1 24 428 451 428 451 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 CTCFL-202 - 663 1.2e-23 81.8 105.8 8 11 1.9e-06 0.0048 17.6 2.0 2 23 459 480 458 481 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 CTCFL-202 - 663 1.2e-23 81.8 105.8 9 11 0.0013 3.4 8.7 6.6 1 23 486 508 486 509 0.84 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 CTCFL-202 - 663 1.2e-23 81.8 105.8 10 11 0.00054 1.4 10.0 4.9 1 24 514 537 514 537 0.90 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 CTCFL-202 - 663 1.2e-23 81.8 105.8 11 11 0.00028 0.73 10.8 2.9 1 21 546 566 546 568 0.92 C2H2-type zinc finger zf-H2C2_5 PF13909.6 26 CTCFL-202 - 663 5.7e-09 35.6 29.4 1 11 0.00032 0.83 9.5 5.0 1 25 257 280 257 281 0.94 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 CTCFL-202 - 663 5.7e-09 35.6 29.4 2 11 0.075 1.9e+02 1.9 0.4 16 26 300 309 298 309 0.94 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 CTCFL-202 - 663 5.7e-09 35.6 29.4 3 11 0.0078 20 5.1 2.4 1 25 313 337 313 338 0.96 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 CTCFL-202 - 663 5.7e-09 35.6 29.4 4 11 2.8e-08 7.1e-05 22.5 1.2 1 26 342 366 342 366 0.98 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 CTCFL-202 - 663 5.7e-09 35.6 29.4 5 11 5e-08 0.00013 21.7 6.0 1 26 370 394 370 394 0.97 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 CTCFL-202 - 663 5.7e-09 35.6 29.4 6 11 0.062 1.6e+02 2.2 0.1 12 25 409 422 408 423 0.86 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 CTCFL-202 - 663 5.7e-09 35.6 29.4 7 11 0.00071 1.8 8.4 0.5 1 24 428 451 428 452 0.95 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 CTCFL-202 - 663 5.7e-09 35.6 29.4 8 11 5.3 1.4e+04 -4.0 6.1 2 24 459 480 458 482 0.61 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 CTCFL-202 - 663 5.7e-09 35.6 29.4 9 11 2.3e-07 0.00058 19.6 7.1 1 26 486 510 486 510 0.98 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 CTCFL-202 - 663 5.7e-09 35.6 29.4 10 11 7 1.8e+04 -4.7 3.8 1 6 546 551 546 551 0.91 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 CTCFL-202 - 663 5.7e-09 35.6 29.4 11 11 1.5 3.8e+03 -2.3 0.5 15 21 560 566 560 567 0.86 C2H2-type zinc-finger domain # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/CTCFL-202.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/CTCFL-202.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/CTCFL-202.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/CTCFL-202.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/CTCFL-202.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:53:46 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 CTCFL-203 - 427 2.1e-24 84.8 43.6 1 6 0.36 6.4e+02 1.1 0.2 14 23 256 265 245 268 0.72 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 CTCFL-203 - 427 2.1e-24 84.8 43.6 2 6 9.5e-10 1.7e-06 28.2 5.9 2 25 272 295 271 296 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 CTCFL-203 - 427 2.1e-24 84.8 43.6 3 6 2e-08 3.7e-05 24.0 0.3 2 26 300 324 300 324 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 CTCFL-203 - 427 2.1e-24 84.8 43.6 4 6 1.2e-07 0.00022 21.5 4.1 2 24 328 351 327 352 0.90 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 CTCFL-203 - 427 2.1e-24 84.8 43.6 5 6 7.9e-09 1.4e-05 25.3 2.6 2 23 357 378 356 380 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 CTCFL-203 - 427 2.1e-24 84.8 43.6 6 6 0.0056 10 6.8 0.2 2 10 385 393 384 409 0.85 Zinc-finger double domain zf-C2H2 PF00096.26 23 CTCFL-203 - 427 1.1e-13 50.9 47.6 1 5 0.0017 3.1 8.4 5.4 1 23 257 279 257 279 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 CTCFL-203 - 427 1.1e-13 50.9 47.6 2 5 0.00011 0.21 12.1 4.6 3 23 287 307 285 307 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 CTCFL-203 - 427 1.1e-13 50.9 47.6 3 5 1.5e-08 2.7e-05 24.3 0.8 1 23 313 336 313 336 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 CTCFL-203 - 427 1.1e-13 50.9 47.6 4 5 3.3e-05 0.06 13.8 1.2 1 23 342 364 342 364 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 CTCFL-203 - 427 1.1e-13 50.9 47.6 5 5 1.2e-05 0.022 15.2 5.8 1 23 370 392 370 392 0.99 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 CTCFL-203 - 427 3.6e-13 49.1 42.3 1 5 0.00012 0.22 12.5 3.7 1 23 257 279 257 280 0.88 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 CTCFL-203 - 427 3.6e-13 49.1 42.3 2 5 3.4e-05 0.061 14.2 3.3 2 23 286 307 285 308 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 CTCFL-203 - 427 3.6e-13 49.1 42.3 3 5 1.3e-05 0.024 15.5 0.5 1 24 313 336 313 336 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 CTCFL-203 - 427 3.6e-13 49.1 42.3 4 5 5.7e-05 0.1 13.5 1.3 1 23 342 364 342 365 0.90 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 CTCFL-203 - 427 3.6e-13 49.1 42.3 5 5 9.7e-06 0.017 15.9 4.3 1 23 370 392 370 393 0.84 C2H2-type zinc finger zf-H2C2_5 PF13909.6 26 CTCFL-203 - 427 3.4e-10 39.5 44.5 1 5 0.00027 0.49 10.2 5.0 1 25 257 280 257 281 0.94 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 CTCFL-203 - 427 3.4e-10 39.5 44.5 2 5 0.066 1.2e+02 2.6 0.4 16 26 300 309 298 309 0.94 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 CTCFL-203 - 427 3.4e-10 39.5 44.5 3 5 0.0066 12 5.8 2.4 1 25 313 337 313 338 0.96 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 CTCFL-203 - 427 3.4e-10 39.5 44.5 4 5 2.3e-08 4.2e-05 23.2 1.2 1 26 342 366 342 366 0.98 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 CTCFL-203 - 427 3.4e-10 39.5 44.5 5 5 3.1e-07 0.00055 19.6 6.7 1 25 370 393 370 394 0.97 C2H2-type zinc-finger domain # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/CTCFL-203.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/CTCFL-203.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/CTCFL-203.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/CTCFL-203.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/CTCFL-203.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:53:46 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 CTCFL-204 - 573 1.2e-43 145.7 99.8 1 11 0.35 9.1e+02 0.6 0.1 14 23 256 265 246 268 0.72 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 CTCFL-204 - 573 1.2e-43 145.7 99.8 2 11 9.5e-10 2.4e-06 27.7 5.9 2 25 272 295 271 296 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 CTCFL-204 - 573 1.2e-43 145.7 99.8 3 11 2e-08 5.2e-05 23.5 0.3 2 26 300 324 300 324 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 CTCFL-204 - 573 1.2e-43 145.7 99.8 4 11 1.2e-07 0.00032 21.0 4.1 2 24 328 351 327 352 0.90 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 CTCFL-204 - 573 1.2e-43 145.7 99.8 5 11 7.9e-09 2e-05 24.8 2.6 2 23 357 378 356 380 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 CTCFL-204 - 573 1.2e-43 145.7 99.8 6 11 5.6e-10 1.4e-06 28.4 5.2 2 25 385 408 384 409 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 CTCFL-204 - 573 1.2e-43 145.7 99.8 7 11 0.0021 5.3 7.7 1.3 5 21 416 434 413 435 0.79 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 CTCFL-204 - 573 1.2e-43 145.7 99.8 8 11 0.13 3.4e+02 1.9 0.3 5 24 446 467 445 468 0.73 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 CTCFL-204 - 573 1.2e-43 145.7 99.8 9 11 7.4e-07 0.0019 18.5 6.3 1 25 472 496 472 497 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 CTCFL-204 - 573 1.2e-43 145.7 99.8 10 11 1.1e-09 2.8e-06 27.5 3.9 2 25 501 524 500 525 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 CTCFL-204 - 573 1.2e-43 145.7 99.8 11 11 3.6e-06 0.0093 16.4 0.8 2 25 529 556 529 557 0.84 Zinc-finger double domain zf-C2H2 PF00096.26 23 CTCFL-204 - 573 2.3e-28 97.0 110.7 1 11 0.0017 4.4 8.0 5.4 1 23 257 279 257 279 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 CTCFL-204 - 573 2.3e-28 97.0 110.7 2 11 0.00011 0.29 11.7 4.6 3 23 287 307 285 307 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 CTCFL-204 - 573 2.3e-28 97.0 110.7 3 11 1.5e-08 3.9e-05 23.9 0.8 1 23 313 336 313 336 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 CTCFL-204 - 573 2.3e-28 97.0 110.7 4 11 3.3e-05 0.085 13.3 1.2 1 23 342 364 342 364 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 CTCFL-204 - 573 2.3e-28 97.0 110.7 5 11 1.2e-05 0.032 14.7 5.8 1 23 370 392 370 392 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 CTCFL-204 - 573 2.3e-28 97.0 110.7 6 11 7.8e-06 0.02 15.3 3.5 1 23 398 421 398 421 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 CTCFL-204 - 573 2.3e-28 97.0 110.7 7 11 7.9e-06 0.02 15.3 0.3 1 23 428 451 428 451 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 CTCFL-204 - 573 2.3e-28 97.0 110.7 8 11 2.6e-05 0.067 13.7 1.7 2 23 459 480 458 480 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 CTCFL-204 - 573 2.3e-28 97.0 110.7 9 11 3.5e-05 0.09 13.3 8.3 1 23 486 508 486 508 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 CTCFL-204 - 573 2.3e-28 97.0 110.7 10 11 1.5e-05 0.037 14.5 5.4 1 23 514 537 514 537 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 CTCFL-204 - 573 2.3e-28 97.0 110.7 11 11 0.00015 0.4 11.2 0.7 1 13 546 558 546 560 0.94 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 CTCFL-204 - 573 1.3e-23 81.6 101.9 1 11 0.00012 0.31 12.0 3.7 1 23 257 279 257 280 0.88 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 CTCFL-204 - 573 1.3e-23 81.6 101.9 2 11 3.4e-05 0.088 13.7 3.3 2 23 286 307 285 308 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 CTCFL-204 - 573 1.3e-23 81.6 101.9 3 11 1.3e-05 0.034 15.0 0.5 1 24 313 336 313 336 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 CTCFL-204 - 573 1.3e-23 81.6 101.9 4 11 5.7e-05 0.15 13.0 1.3 1 23 342 364 342 365 0.90 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 CTCFL-204 - 573 1.3e-23 81.6 101.9 5 11 9.8e-06 0.025 15.4 4.3 1 23 370 392 370 393 0.84 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 CTCFL-204 - 573 1.3e-23 81.6 101.9 6 11 0.0001 0.25 12.3 2.7 1 24 398 421 398 421 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 CTCFL-204 - 573 1.3e-23 81.6 101.9 7 11 6.5e-05 0.17 12.8 0.2 1 24 428 451 428 451 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 CTCFL-204 - 573 1.3e-23 81.6 101.9 8 11 1.6e-06 0.004 17.9 2.0 2 23 459 480 458 481 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 CTCFL-204 - 573 1.3e-23 81.6 101.9 9 11 0.0011 2.9 9.0 6.6 1 23 486 508 486 509 0.84 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 CTCFL-204 - 573 1.3e-23 81.6 101.9 10 11 0.00045 1.2 10.2 4.9 1 24 514 537 514 537 0.90 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 CTCFL-204 - 573 1.3e-23 81.6 101.9 11 11 0.0053 14 6.9 0.5 1 12 546 557 546 560 0.90 C2H2-type zinc finger zf-H2C2_5 PF13909.6 26 CTCFL-204 - 573 1.2e-09 37.7 95.3 1 10 0.00027 0.7 9.7 5.0 1 25 257 280 257 281 0.94 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 CTCFL-204 - 573 1.2e-09 37.7 95.3 2 10 0.064 1.6e+02 2.1 0.4 16 26 300 309 298 309 0.94 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 CTCFL-204 - 573 1.2e-09 37.7 95.3 3 10 0.0066 17 5.3 2.4 1 25 313 337 313 338 0.96 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 CTCFL-204 - 573 1.2e-09 37.7 95.3 4 10 2.3e-08 6e-05 22.7 1.2 1 26 342 366 342 366 0.98 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 CTCFL-204 - 573 1.2e-09 37.7 95.3 5 10 4.2e-08 0.00011 21.9 6.0 1 26 370 394 370 394 0.97 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 CTCFL-204 - 573 1.2e-09 37.7 95.3 6 10 0.053 1.4e+02 2.4 0.1 12 25 409 422 408 423 0.86 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 CTCFL-204 - 573 1.2e-09 37.7 95.3 7 10 0.00061 1.6 8.6 0.5 1 24 428 451 428 452 0.95 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 CTCFL-204 - 573 1.2e-09 37.7 95.3 8 10 4.8 1.2e+04 -3.9 6.2 2 24 459 480 458 482 0.61 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 CTCFL-204 - 573 1.2e-09 37.7 95.3 9 10 1.9e-07 0.00049 19.8 7.1 1 26 486 510 486 510 0.98 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 CTCFL-204 - 573 1.2e-09 37.7 95.3 10 10 7 1.8e+04 -4.4 3.8 1 6 546 551 546 551 0.91 C2H2-type zinc-finger domain # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/CTCFL-204.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/CTCFL-204.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/CTCFL-204.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/CTCFL-204.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/CTCFL-204.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:53:46 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 CTCFL-205 - 700 1.5e-42 142.2 100.0 1 11 0.46 1.2e+03 0.2 0.1 14 23 256 265 247 268 0.71 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 CTCFL-205 - 700 1.5e-42 142.2 100.0 2 11 1.2e-09 3.1e-06 27.4 5.9 2 25 272 295 271 296 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 CTCFL-205 - 700 1.5e-42 142.2 100.0 3 11 2.6e-08 6.6e-05 23.2 0.3 2 26 300 324 300 324 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 CTCFL-205 - 700 1.5e-42 142.2 100.0 4 11 1.6e-07 0.0004 20.7 4.1 2 24 328 351 327 352 0.90 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 CTCFL-205 - 700 1.5e-42 142.2 100.0 5 11 1e-08 2.6e-05 24.5 2.6 2 23 357 378 356 380 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 CTCFL-205 - 700 1.5e-42 142.2 100.0 6 11 7e-10 1.8e-06 28.1 5.2 2 25 385 408 384 409 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 CTCFL-205 - 700 1.5e-42 142.2 100.0 7 11 0.0026 6.6 7.3 1.3 5 21 416 434 413 435 0.79 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 CTCFL-205 - 700 1.5e-42 142.2 100.0 8 11 0.17 4.3e+02 1.6 0.3 5 24 446 467 445 468 0.73 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 CTCFL-205 - 700 1.5e-42 142.2 100.0 9 11 9.4e-07 0.0024 18.2 6.3 1 25 472 496 472 497 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 CTCFL-205 - 700 1.5e-42 142.2 100.0 10 11 1.4e-09 3.6e-06 27.2 3.9 2 25 501 524 500 525 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 CTCFL-205 - 700 1.5e-42 142.2 100.0 11 11 4.6e-06 0.012 16.0 0.8 2 25 529 556 529 557 0.84 Zinc-finger double domain zf-C2H2 PF00096.26 23 CTCFL-205 - 700 5.3e-30 102.2 111.4 1 11 0.0022 5.5 7.6 5.4 1 23 257 279 257 279 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 CTCFL-205 - 700 5.3e-30 102.2 111.4 2 11 0.00014 0.37 11.3 4.6 3 23 287 307 285 307 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 CTCFL-205 - 700 5.3e-30 102.2 111.4 3 11 1.9e-08 4.9e-05 23.5 0.8 1 23 313 336 313 336 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 CTCFL-205 - 700 5.3e-30 102.2 111.4 4 11 4.2e-05 0.11 13.0 1.2 1 23 342 364 342 364 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 CTCFL-205 - 700 5.3e-30 102.2 111.4 5 11 1.6e-05 0.04 14.4 5.8 1 23 370 392 370 392 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 CTCFL-205 - 700 5.3e-30 102.2 111.4 6 11 9.8e-06 0.025 15.0 3.5 1 23 398 421 398 421 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 CTCFL-205 - 700 5.3e-30 102.2 111.4 7 11 1e-05 0.026 15.0 0.3 1 23 428 451 428 451 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 CTCFL-205 - 700 5.3e-30 102.2 111.4 8 11 3.3e-05 0.085 13.4 1.7 2 23 459 480 458 480 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 CTCFL-205 - 700 5.3e-30 102.2 111.4 9 11 4.4e-05 0.11 13.0 8.3 1 23 486 508 486 508 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 CTCFL-205 - 700 5.3e-30 102.2 111.4 10 11 1.8e-05 0.047 14.2 5.4 1 23 514 537 514 537 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 CTCFL-205 - 700 5.3e-30 102.2 111.4 11 11 2.7e-07 0.00068 20.0 1.0 1 19 546 564 546 567 0.96 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 CTCFL-205 - 700 2.3e-23 80.8 105.8 1 11 0.00015 0.39 11.7 3.7 1 23 257 279 257 280 0.88 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 CTCFL-205 - 700 2.3e-23 80.8 105.8 2 11 4.3e-05 0.11 13.4 3.3 2 23 286 307 285 308 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 CTCFL-205 - 700 2.3e-23 80.8 105.8 3 11 1.7e-05 0.043 14.7 0.5 1 24 313 336 313 336 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 CTCFL-205 - 700 2.3e-23 80.8 105.8 4 11 7.3e-05 0.19 12.7 1.3 1 23 342 364 342 365 0.90 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 CTCFL-205 - 700 2.3e-23 80.8 105.8 5 11 1.2e-05 0.032 15.1 4.3 1 23 370 392 370 393 0.84 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 CTCFL-205 - 700 2.3e-23 80.8 105.8 6 11 0.00013 0.32 11.9 2.7 1 24 398 421 398 421 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 CTCFL-205 - 700 2.3e-23 80.8 105.8 7 11 8.3e-05 0.21 12.5 0.2 1 24 428 451 428 451 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 CTCFL-205 - 700 2.3e-23 80.8 105.8 8 11 2e-06 0.0051 17.5 2.0 2 23 459 480 458 481 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 CTCFL-205 - 700 2.3e-23 80.8 105.8 9 11 0.0014 3.7 8.7 6.6 1 23 486 508 486 509 0.84 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 CTCFL-205 - 700 2.3e-23 80.8 105.8 10 11 0.00057 1.5 9.9 4.9 1 24 514 537 514 537 0.90 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 CTCFL-205 - 700 2.3e-23 80.8 105.8 11 11 0.0003 0.78 10.8 2.9 1 21 546 566 546 568 0.92 C2H2-type zinc finger zf-H2C2_5 PF13909.6 26 CTCFL-205 - 700 7.7e-09 35.1 29.4 1 11 0.00034 0.88 9.4 5.0 1 25 257 280 257 281 0.94 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 CTCFL-205 - 700 7.7e-09 35.1 29.4 2 11 0.079 2e+02 1.8 0.4 16 26 300 309 298 309 0.94 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 CTCFL-205 - 700 7.7e-09 35.1 29.4 3 11 0.0083 21 5.0 2.4 1 25 313 337 313 338 0.96 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 CTCFL-205 - 700 7.7e-09 35.1 29.4 4 11 2.9e-08 7.5e-05 22.4 1.2 1 26 342 366 342 366 0.98 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 CTCFL-205 - 700 7.7e-09 35.1 29.4 5 11 5.3e-08 0.00014 21.6 6.0 1 26 370 394 370 394 0.97 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 CTCFL-205 - 700 7.7e-09 35.1 29.4 6 11 0.066 1.7e+02 2.1 0.1 12 25 409 422 408 423 0.86 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 CTCFL-205 - 700 7.7e-09 35.1 29.4 7 11 0.00074 1.9 8.3 0.5 1 24 428 451 428 452 0.95 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 CTCFL-205 - 700 7.7e-09 35.1 29.4 8 11 6.9 1.8e+04 -4.4 6.4 2 24 459 480 458 482 0.61 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 CTCFL-205 - 700 7.7e-09 35.1 29.4 9 11 2.4e-07 0.00062 19.5 7.1 1 26 486 510 486 510 0.98 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 CTCFL-205 - 700 7.7e-09 35.1 29.4 10 11 7 1.8e+04 -4.7 3.8 1 6 546 551 546 551 0.91 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 CTCFL-205 - 700 7.7e-09 35.1 29.4 11 11 1.6 4.1e+03 -2.3 0.5 15 21 560 566 560 567 0.86 C2H2-type zinc-finger domain # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/CTCFL-205.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/CTCFL-205.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/CTCFL-205.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/CTCFL-205.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/CTCFL-205.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:53:47 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 CTCFL-206 - 451 6.4e-31 105.4 60.6 1 7 0.31 6.9e+02 1.0 0.2 14 23 256 265 245 268 0.72 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 CTCFL-206 - 451 6.4e-31 105.4 60.6 2 7 8.1e-10 1.8e-06 28.1 5.9 2 25 272 295 271 296 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 CTCFL-206 - 451 6.4e-31 105.4 60.6 3 7 1.7e-08 3.9e-05 23.9 0.3 2 26 300 324 300 324 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 CTCFL-206 - 451 6.4e-31 105.4 60.6 4 7 1.1e-07 0.00024 21.4 4.1 2 24 328 351 327 352 0.90 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 CTCFL-206 - 451 6.4e-31 105.4 60.6 5 7 6.8e-09 1.5e-05 25.2 2.6 2 23 357 378 356 380 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 CTCFL-206 - 451 6.4e-31 105.4 60.6 6 7 4.8e-10 1.1e-06 28.8 5.2 2 25 385 408 384 409 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 CTCFL-206 - 451 6.4e-31 105.4 60.6 7 7 0.0018 4 8.0 1.3 5 21 416 434 413 435 0.79 Zinc-finger double domain zf-C2H2 PF00096.26 23 CTCFL-206 - 451 1.6e-17 62.9 61.5 1 7 0.0015 3.3 8.4 5.4 1 23 257 279 257 279 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 CTCFL-206 - 451 1.6e-17 62.9 61.5 2 7 9.8e-05 0.22 12.1 4.6 3 23 287 307 285 307 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 CTCFL-206 - 451 1.6e-17 62.9 61.5 3 7 1.3e-08 2.9e-05 24.3 0.8 1 23 313 336 313 336 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 CTCFL-206 - 451 1.6e-17 62.9 61.5 4 7 2.9e-05 0.064 13.7 1.2 1 23 342 364 342 364 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 CTCFL-206 - 451 1.6e-17 62.9 61.5 5 7 1.1e-05 0.024 15.1 5.8 1 23 370 392 370 392 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 CTCFL-206 - 451 1.6e-17 62.9 61.5 6 7 6.7e-06 0.015 15.7 3.5 1 23 398 421 398 421 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 CTCFL-206 - 451 1.6e-17 62.9 61.5 7 7 0.028 63 4.3 0.0 1 16 428 443 428 443 0.86 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 CTCFL-206 - 451 1e-15 57.1 56.2 1 7 0.0001 0.23 12.4 3.7 1 23 257 279 257 280 0.88 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 CTCFL-206 - 451 1e-15 57.1 56.2 2 7 2.9e-05 0.066 14.1 3.3 2 23 286 307 285 308 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 CTCFL-206 - 451 1e-15 57.1 56.2 3 7 1.1e-05 0.025 15.4 0.5 1 24 313 336 313 336 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 CTCFL-206 - 451 1e-15 57.1 56.2 4 7 4.9e-05 0.11 13.4 1.3 1 23 342 364 342 365 0.90 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 CTCFL-206 - 451 1e-15 57.1 56.2 5 7 8.3e-06 0.019 15.8 4.3 1 23 370 392 370 393 0.84 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 CTCFL-206 - 451 1e-15 57.1 56.2 6 7 8.5e-05 0.19 12.6 2.7 1 24 398 421 398 421 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 CTCFL-206 - 451 1e-15 57.1 56.2 7 7 0.049 1.1e+02 4.1 0.1 1 7 428 434 428 444 0.77 C2H2-type zinc finger zf-H2C2_5 PF13909.6 26 CTCFL-206 - 451 6.4e-10 38.6 56.0 1 7 0.00023 0.53 10.1 5.0 1 25 257 280 257 281 0.94 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 CTCFL-206 - 451 6.4e-10 38.6 56.0 2 7 0.056 1.3e+02 2.5 0.4 16 26 300 309 298 309 0.94 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 CTCFL-206 - 451 6.4e-10 38.6 56.0 3 7 0.0056 13 5.7 2.4 1 25 313 337 313 338 0.96 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 CTCFL-206 - 451 6.4e-10 38.6 56.0 4 7 2e-08 4.5e-05 23.1 1.2 1 26 342 366 342 366 0.98 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 CTCFL-206 - 451 6.4e-10 38.6 56.0 5 7 3.6e-08 8.1e-05 22.3 6.0 1 26 370 394 370 394 0.97 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 CTCFL-206 - 451 6.4e-10 38.6 56.0 6 7 0.046 1e+02 2.8 0.1 12 25 409 422 408 423 0.86 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 CTCFL-206 - 451 6.4e-10 38.6 56.0 7 7 0.096 2.2e+02 1.7 1.3 1 6 428 433 428 434 0.96 C2H2-type zinc-finger domain # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/CTCFL-206.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/CTCFL-206.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/CTCFL-206.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/CTCFL-206.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/CTCFL-206.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:53:47 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 CTCFL-207 - 613 3.4e-38 128.4 82.1 1 9 0.38 9.8e+02 0.5 0.1 14 23 256 265 246 268 0.72 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 CTCFL-207 - 613 3.4e-38 128.4 82.1 2 9 1e-09 2.6e-06 27.6 5.9 2 25 272 295 271 296 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 CTCFL-207 - 613 3.4e-38 128.4 82.1 3 9 2.2e-08 5.7e-05 23.4 0.3 2 26 300 324 300 324 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 CTCFL-207 - 613 3.4e-38 128.4 82.1 4 9 1.3e-07 0.00035 20.9 4.1 2 24 328 351 327 352 0.90 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 CTCFL-207 - 613 3.4e-38 128.4 82.1 5 9 8.5e-09 2.2e-05 24.7 2.6 2 23 357 378 356 380 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 CTCFL-207 - 613 3.4e-38 128.4 82.1 6 9 0.00015 0.38 11.3 2.3 2 24 385 417 384 418 0.79 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 CTCFL-207 - 613 3.4e-38 128.4 82.1 7 9 8.1e-07 0.0021 18.4 6.3 1 25 422 446 422 447 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 CTCFL-207 - 613 3.4e-38 128.4 82.1 8 9 1.2e-09 3.1e-06 27.4 3.9 2 25 451 474 450 475 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 CTCFL-207 - 613 3.4e-38 128.4 82.1 9 9 3.9e-06 0.01 16.2 0.8 2 25 479 506 479 507 0.84 Zinc-finger double domain zf-C2H2 PF00096.26 23 CTCFL-207 - 613 2.7e-22 77.9 101.6 1 10 0.0018 4.7 7.9 5.4 1 23 257 279 257 279 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 CTCFL-207 - 613 2.7e-22 77.9 101.6 2 10 0.00012 0.32 11.6 4.6 3 23 287 307 285 307 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 CTCFL-207 - 613 2.7e-22 77.9 101.6 3 10 1.7e-08 4.2e-05 23.8 0.8 1 23 313 336 313 336 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 CTCFL-207 - 613 2.7e-22 77.9 101.6 4 10 3.6e-05 0.092 13.2 1.2 1 23 342 364 342 364 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 CTCFL-207 - 613 2.7e-22 77.9 101.6 5 10 1.3e-05 0.034 14.6 5.8 1 23 370 392 370 392 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 CTCFL-207 - 613 2.7e-22 77.9 101.6 6 10 4.9 1.2e+04 -2.9 0.7 18 23 395 401 395 401 0.87 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 CTCFL-207 - 613 2.7e-22 77.9 101.6 7 10 2.8e-05 0.073 13.6 1.7 2 23 409 430 408 430 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 CTCFL-207 - 613 2.7e-22 77.9 101.6 8 10 3.8e-05 0.097 13.2 8.3 1 23 436 458 436 458 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 CTCFL-207 - 613 2.7e-22 77.9 101.6 9 10 1.6e-05 0.04 14.4 5.4 1 23 464 487 464 487 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 CTCFL-207 - 613 2.7e-22 77.9 101.6 10 10 2.3e-07 0.00058 20.2 1.0 1 19 496 514 496 517 0.96 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 CTCFL-207 - 613 2e-19 68.6 90.0 1 9 0.00013 0.34 11.9 3.7 1 23 257 279 257 280 0.88 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 CTCFL-207 - 613 2e-19 68.6 90.0 2 9 3.7e-05 0.095 13.6 3.3 2 23 286 307 285 308 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 CTCFL-207 - 613 2e-19 68.6 90.0 3 9 1.4e-05 0.037 14.9 0.5 1 24 313 336 313 336 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 CTCFL-207 - 613 2e-19 68.6 90.0 4 9 6.2e-05 0.16 12.9 1.3 1 23 342 364 342 365 0.90 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 CTCFL-207 - 613 2e-19 68.6 90.0 5 9 1.1e-05 0.027 15.3 4.3 1 23 370 392 370 393 0.84 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 CTCFL-207 - 613 2e-19 68.6 90.0 6 9 1.7e-06 0.0043 17.8 2.0 2 23 409 430 408 431 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 CTCFL-207 - 613 2e-19 68.6 90.0 7 9 0.0012 3.1 8.9 6.6 1 23 436 458 436 459 0.84 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 CTCFL-207 - 613 2e-19 68.6 90.0 8 9 0.00049 1.3 10.1 4.9 1 24 464 487 464 487 0.90 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 CTCFL-207 - 613 2e-19 68.6 90.0 9 9 0.00026 0.66 11.0 2.9 1 21 496 516 496 518 0.92 C2H2-type zinc finger zf-H2C2_5 PF13909.6 26 CTCFL-207 - 613 3.7e-09 36.2 29.4 1 10 0.00029 0.75 9.6 5.0 1 25 257 280 257 281 0.94 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 CTCFL-207 - 613 3.7e-09 36.2 29.4 2 10 0.069 1.8e+02 2.0 0.4 16 26 300 309 298 309 0.94 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 CTCFL-207 - 613 3.7e-09 36.2 29.4 3 10 0.0071 18 5.2 2.4 1 25 313 337 313 338 0.96 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 CTCFL-207 - 613 3.7e-09 36.2 29.4 4 10 2.5e-08 6.5e-05 22.6 1.2 1 26 342 366 342 366 0.98 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 CTCFL-207 - 613 3.7e-09 36.2 29.4 5 10 4.6e-08 0.00012 21.8 6.0 1 26 370 394 370 394 0.97 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 CTCFL-207 - 613 3.7e-09 36.2 29.4 6 10 7 1.8e+04 -4.4 1.0 19 24 396 401 396 401 0.90 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 CTCFL-207 - 613 3.7e-09 36.2 29.4 7 10 5.6 1.4e+04 -4.1 6.3 2 24 409 430 408 432 0.61 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 CTCFL-207 - 613 3.7e-09 36.2 29.4 8 10 2.1e-07 0.00053 19.7 7.1 1 26 436 460 436 460 0.98 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 CTCFL-207 - 613 3.7e-09 36.2 29.4 9 10 7 1.8e+04 -4.5 3.8 1 6 496 501 496 501 0.91 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 CTCFL-207 - 613 3.7e-09 36.2 29.4 10 10 1.4 3.5e+03 -2.1 0.5 15 21 510 516 510 517 0.86 C2H2-type zinc-finger domain # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/CTCFL-207.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/CTCFL-207.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/CTCFL-207.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/CTCFL-207.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/CTCFL-207.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:53:48 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 CTCFL-208 - 483 1.9e-27 94.4 48.0 1 6 0.33 7.4e+02 0.9 0.2 14 23 256 265 245 268 0.72 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 CTCFL-208 - 483 1.9e-27 94.4 48.0 2 6 8.8e-10 2e-06 28.0 5.9 2 25 272 295 271 296 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 CTCFL-208 - 483 1.9e-27 94.4 48.0 3 6 1.9e-08 4.3e-05 23.8 0.3 2 26 300 324 300 324 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 CTCFL-208 - 483 1.9e-27 94.4 48.0 4 6 1.2e-07 0.00026 21.3 4.1 2 24 328 351 327 352 0.90 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 CTCFL-208 - 483 1.9e-27 94.4 48.0 5 6 1e-09 2.3e-06 27.8 3.9 2 25 357 380 356 381 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 CTCFL-208 - 483 1.9e-27 94.4 48.0 6 6 3.4e-06 0.0076 16.6 0.8 2 25 385 412 385 413 0.84 Zinc-finger double domain zf-C2H2 PF00096.26 23 CTCFL-208 - 483 2.1e-15 56.2 52.9 1 6 0.0016 3.6 8.2 5.4 1 23 257 279 257 279 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 CTCFL-208 - 483 2.1e-15 56.2 52.9 2 6 0.00011 0.24 11.9 4.6 3 23 287 307 285 307 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 CTCFL-208 - 483 2.1e-15 56.2 52.9 3 6 1.4e-08 3.2e-05 24.1 0.8 1 23 313 336 313 336 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 CTCFL-208 - 483 2.1e-15 56.2 52.9 4 6 0.0002 0.45 11.1 2.0 1 23 342 364 342 364 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 CTCFL-208 - 483 2.1e-15 56.2 52.9 5 6 1.4e-05 0.03 14.8 5.4 1 23 370 393 370 393 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 CTCFL-208 - 483 2.1e-15 56.2 52.9 6 6 6.8e-05 0.15 12.5 0.1 1 13 402 414 402 418 0.91 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 CTCFL-208 - 483 6.8e-11 42.0 49.2 1 6 0.00011 0.25 12.3 3.7 1 23 257 279 257 280 0.88 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 CTCFL-208 - 483 6.8e-11 42.0 49.2 2 6 3.2e-05 0.071 14.0 3.3 2 23 286 307 285 308 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 CTCFL-208 - 483 6.8e-11 42.0 49.2 3 6 1.2e-05 0.028 15.3 0.5 1 24 313 336 313 336 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 CTCFL-208 - 483 6.8e-11 42.0 49.2 4 6 0.00095 2.1 9.4 1.6 1 23 342 364 342 365 0.85 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 CTCFL-208 - 483 6.8e-11 42.0 49.2 5 6 0.00042 0.94 10.5 4.9 1 24 370 393 370 393 0.90 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 CTCFL-208 - 483 6.8e-11 42.0 49.2 6 6 0.0044 9.9 7.3 0.3 1 12 402 413 402 416 0.90 C2H2-type zinc finger # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/CTCFL-208.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/CTCFL-208.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/CTCFL-208.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/CTCFL-208.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/CTCFL-208.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:53:48 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 CTCFL-209 - 460 6.8e-45 149.6 99.7 1 11 0.35 7e+02 0.9 0.2 14 23 51 60 40 63 0.72 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 CTCFL-209 - 460 6.8e-45 149.6 99.7 2 11 9.4e-10 1.9e-06 28.0 5.9 2 25 67 90 66 91 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 CTCFL-209 - 460 6.8e-45 149.6 99.7 3 11 2e-08 4e-05 23.8 0.3 2 26 95 119 95 119 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 CTCFL-209 - 460 6.8e-45 149.6 99.7 4 11 1.2e-07 0.00024 21.4 4.1 2 24 123 146 122 147 0.90 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 CTCFL-209 - 460 6.8e-45 149.6 99.7 5 11 7.8e-09 1.6e-05 25.1 2.6 2 23 152 173 151 175 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 CTCFL-209 - 460 6.8e-45 149.6 99.7 6 11 5.5e-10 1.1e-06 28.8 5.2 2 25 180 203 179 204 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 CTCFL-209 - 460 6.8e-45 149.6 99.7 7 11 0.002 4.1 8.0 1.3 5 21 211 229 208 230 0.79 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 CTCFL-209 - 460 6.8e-45 149.6 99.7 8 11 0.12 2.4e+02 2.4 0.2 5 24 241 262 239 263 0.74 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 CTCFL-209 - 460 6.8e-45 149.6 99.7 9 11 7.4e-07 0.0015 18.9 6.3 1 25 267 291 267 292 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 CTCFL-209 - 460 6.8e-45 149.6 99.7 10 11 1.1e-09 2.2e-06 27.8 3.9 2 25 296 319 295 320 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 CTCFL-209 - 460 6.8e-45 149.6 99.7 11 11 3.6e-06 0.0071 16.7 0.8 2 25 324 351 324 352 0.84 Zinc-finger double domain zf-C2H2 PF00096.26 23 CTCFL-209 - 460 2.5e-32 109.5 111.4 1 11 0.0017 3.4 8.3 5.4 1 23 52 74 52 74 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 CTCFL-209 - 460 2.5e-32 109.5 111.4 2 11 0.00011 0.22 12.0 4.6 3 23 82 102 80 102 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 CTCFL-209 - 460 2.5e-32 109.5 111.4 3 11 1.5e-08 3e-05 24.2 0.8 1 23 108 131 108 131 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 CTCFL-209 - 460 2.5e-32 109.5 111.4 4 11 3.3e-05 0.066 13.7 1.2 1 23 137 159 137 159 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 CTCFL-209 - 460 2.5e-32 109.5 111.4 5 11 1.2e-05 0.024 15.1 5.8 1 23 165 187 165 187 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 CTCFL-209 - 460 2.5e-32 109.5 111.4 6 11 7.7e-06 0.015 15.7 3.5 1 23 193 216 193 216 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 CTCFL-209 - 460 2.5e-32 109.5 111.4 7 11 7.8e-06 0.015 15.7 0.3 1 23 223 246 223 246 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 CTCFL-209 - 460 2.5e-32 109.5 111.4 8 11 2.6e-05 0.052 14.0 1.7 2 23 254 275 253 275 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 CTCFL-209 - 460 2.5e-32 109.5 111.4 9 11 3.5e-05 0.069 13.6 8.3 1 23 281 303 281 303 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 CTCFL-209 - 460 2.5e-32 109.5 111.4 10 11 1.4e-05 0.029 14.8 5.4 1 23 309 332 309 332 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 CTCFL-209 - 460 2.5e-32 109.5 111.4 11 11 2.1e-07 0.00042 20.6 1.0 1 19 341 359 341 362 0.96 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 CTCFL-209 - 460 1.1e-25 88.1 105.8 1 11 0.00012 0.24 12.4 3.7 1 23 52 74 52 75 0.88 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 CTCFL-209 - 460 1.1e-25 88.1 105.8 2 11 3.4e-05 0.067 14.1 3.3 2 23 81 102 80 103 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 CTCFL-209 - 460 1.1e-25 88.1 105.8 3 11 1.3e-05 0.026 15.3 0.5 1 24 108 131 108 131 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 CTCFL-209 - 460 1.1e-25 88.1 105.8 4 11 5.7e-05 0.11 13.4 1.3 1 23 137 159 137 160 0.90 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 CTCFL-209 - 460 1.1e-25 88.1 105.8 5 11 9.6e-06 0.019 15.8 4.3 1 23 165 187 165 188 0.84 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 CTCFL-209 - 460 1.1e-25 88.1 105.8 6 11 9.8e-05 0.2 12.6 2.7 1 24 193 216 193 216 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 CTCFL-209 - 460 1.1e-25 88.1 105.8 7 11 6.4e-05 0.13 13.2 0.2 1 24 223 246 223 246 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 CTCFL-209 - 460 1.1e-25 88.1 105.8 8 11 1.5e-06 0.0031 18.2 2.0 2 23 254 275 253 276 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 CTCFL-209 - 460 1.1e-25 88.1 105.8 9 11 0.0011 2.2 9.3 6.6 1 23 281 303 281 304 0.84 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 CTCFL-209 - 460 1.1e-25 88.1 105.8 10 11 0.00044 0.88 10.6 4.9 1 24 309 332 309 332 0.90 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 CTCFL-209 - 460 1.1e-25 88.1 105.8 11 11 0.00024 0.47 11.4 2.9 1 21 341 361 341 363 0.92 C2H2-type zinc finger zf-H2C2_5 PF13909.6 26 CTCFL-209 - 460 7.4e-10 38.4 29.4 1 11 0.00027 0.54 10.1 5.0 1 25 52 75 52 76 0.94 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 CTCFL-209 - 460 7.4e-10 38.4 29.4 2 11 0.064 1.3e+02 2.5 0.4 16 26 95 104 93 104 0.94 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 CTCFL-209 - 460 7.4e-10 38.4 29.4 3 11 0.0065 13 5.7 2.4 1 25 108 132 108 133 0.96 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 CTCFL-209 - 460 7.4e-10 38.4 29.4 4 11 2.3e-08 4.6e-05 23.1 1.2 1 26 137 161 137 161 0.98 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 CTCFL-209 - 460 7.4e-10 38.4 29.4 5 11 4.2e-08 8.3e-05 22.3 6.0 1 26 165 189 165 189 0.97 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 CTCFL-209 - 460 7.4e-10 38.4 29.4 6 11 0.053 1.1e+02 2.7 0.1 12 25 204 217 203 218 0.86 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 CTCFL-209 - 460 7.4e-10 38.4 29.4 7 11 0.00069 1.4 8.8 0.7 1 24 223 246 223 247 0.95 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 CTCFL-209 - 460 7.4e-10 38.4 29.4 8 11 6.8 1.4e+04 -4.0 6.7 2 24 254 275 253 277 0.62 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 CTCFL-209 - 460 7.4e-10 38.4 29.4 9 11 1.9e-07 0.00038 20.2 7.1 1 26 281 305 281 305 0.98 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 CTCFL-209 - 460 7.4e-10 38.4 29.4 10 11 7.4 1.5e+04 -4.1 3.8 1 6 341 346 341 346 0.91 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 CTCFL-209 - 460 7.4e-10 38.4 29.4 11 11 1 2e+03 -1.4 0.3 15 21 355 361 354 362 0.86 C2H2-type zinc-finger domain # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/CTCFL-209.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/CTCFL-209.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/CTCFL-209.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/CTCFL-209.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/CTCFL-209.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:53:48 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 CTCFL-210 - 404 2.1e-17 62.6 28.5 1 4 0.2 6e+02 1.2 0.2 14 23 256 265 245 268 0.72 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 CTCFL-210 - 404 2.1e-17 62.6 28.5 2 4 5.3e-10 1.6e-06 28.3 5.9 2 25 272 295 271 296 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 CTCFL-210 - 404 2.1e-17 62.6 28.5 3 4 1.1e-08 3.4e-05 24.1 0.3 2 26 300 324 300 324 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 CTCFL-210 - 404 2.1e-17 62.6 28.5 4 4 7e-08 0.00021 21.6 4.1 2 24 328 351 327 352 0.90 Zinc-finger double domain zf-C2H2 PF00096.26 23 CTCFL-210 - 404 1.1e-07 31.8 31.1 1 4 0.00096 2.9 8.5 5.4 1 23 257 279 257 279 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 CTCFL-210 - 404 1.1e-07 31.8 31.1 2 4 6.4e-05 0.19 12.2 4.6 3 23 287 307 285 307 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 CTCFL-210 - 404 1.1e-07 31.8 31.1 3 4 8.6e-09 2.6e-05 24.4 0.8 1 23 313 336 313 336 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 CTCFL-210 - 404 1.1e-07 31.8 31.1 4 4 0.2 6e+02 1.2 0.2 1 8 342 349 342 357 0.85 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 CTCFL-210 - 404 2.5e-07 31.0 27.3 1 4 6.8e-05 0.2 12.6 3.7 1 23 257 279 257 280 0.88 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 CTCFL-210 - 404 2.5e-07 31.0 27.3 2 4 1.9e-05 0.057 14.3 3.3 2 23 286 307 285 308 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 CTCFL-210 - 404 2.5e-07 31.0 27.3 3 4 7.4e-06 0.022 15.6 0.5 1 24 313 336 313 336 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 CTCFL-210 - 404 2.5e-07 31.0 27.3 4 4 0.11 3.4e+02 2.5 0.3 1 12 342 351 342 358 0.82 C2H2-type zinc finger # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/CTCFL-210.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/CTCFL-210.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/CTCFL-210.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/CTCFL-210.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/CTCFL-210.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:53:49 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 CTCFL-211 - 403 3.1e-46 153.8 94.8 1 10 7.1e-10 1.6e-06 28.3 5.9 2 25 10 33 9 34 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 CTCFL-211 - 403 3.1e-46 153.8 94.8 2 10 1.5e-08 3.4e-05 24.1 0.3 2 26 38 62 38 62 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 CTCFL-211 - 403 3.1e-46 153.8 94.8 3 10 9.3e-08 0.00021 21.6 4.1 2 24 66 89 65 90 0.90 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 CTCFL-211 - 403 3.1e-46 153.8 94.8 4 10 5.9e-09 1.3e-05 25.4 2.6 2 23 95 116 94 118 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 CTCFL-211 - 403 3.1e-46 153.8 94.8 5 10 4.1e-10 9.3e-07 29.0 5.2 2 25 123 146 122 147 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 CTCFL-211 - 403 3.1e-46 153.8 94.8 6 10 0.0015 3.5 8.2 1.4 5 21 154 172 151 173 0.79 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 CTCFL-211 - 403 3.1e-46 153.8 94.8 7 10 0.092 2.1e+02 2.6 0.2 5 24 184 205 182 206 0.74 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 CTCFL-211 - 403 3.1e-46 153.8 94.8 8 10 5.6e-07 0.0012 19.1 6.3 1 25 210 234 210 235 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 CTCFL-211 - 403 3.1e-46 153.8 94.8 9 10 8.3e-10 1.9e-06 28.1 3.9 2 25 239 262 238 263 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 CTCFL-211 - 403 3.1e-46 153.8 94.8 10 10 2.7e-06 0.006 17.0 0.8 2 25 267 294 267 295 0.84 Zinc-finger double domain zf-C2H2 PF00096.26 23 CTCFL-211 - 403 2e-32 109.8 106.7 1 11 0.0097 22 5.8 1.4 11 23 5 17 2 17 0.88 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 CTCFL-211 - 403 2e-32 109.8 106.7 2 11 8.5e-05 0.19 12.2 4.6 3 23 25 45 23 45 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 CTCFL-211 - 403 2e-32 109.8 106.7 3 11 1.1e-08 2.5e-05 24.4 0.8 1 23 51 74 51 74 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 CTCFL-211 - 403 2e-32 109.8 106.7 4 11 2.5e-05 0.056 13.9 1.2 1 23 80 102 80 102 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 CTCFL-211 - 403 2e-32 109.8 106.7 5 11 9.2e-06 0.021 15.3 5.8 1 23 108 130 108 130 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 CTCFL-211 - 403 2e-32 109.8 106.7 6 11 5.8e-06 0.013 15.9 3.5 1 23 136 159 136 159 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 CTCFL-211 - 403 2e-32 109.8 106.7 7 11 5.9e-06 0.013 15.9 0.3 1 23 166 189 166 189 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 CTCFL-211 - 403 2e-32 109.8 106.7 8 11 2e-05 0.044 14.3 1.7 2 23 197 218 196 218 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 CTCFL-211 - 403 2e-32 109.8 106.7 9 11 2.6e-05 0.059 13.9 8.3 1 23 224 246 224 246 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 CTCFL-211 - 403 2e-32 109.8 106.7 10 11 1.1e-05 0.024 15.1 5.4 1 23 252 275 252 275 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 CTCFL-211 - 403 2e-32 109.8 106.7 11 11 1.6e-07 0.00035 20.8 1.0 1 19 284 302 284 305 0.96 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 CTCFL-211 - 403 1e-24 85.1 101.0 1 11 0.017 38 5.5 0.5 12 23 6 17 1 18 0.73 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 CTCFL-211 - 403 1e-24 85.1 101.0 2 11 2.6e-05 0.057 14.3 3.3 2 23 24 45 23 46 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 CTCFL-211 - 403 1e-24 85.1 101.0 3 11 9.8e-06 0.022 15.6 0.5 1 24 51 74 51 74 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 CTCFL-211 - 403 1e-24 85.1 101.0 4 11 4.3e-05 0.096 13.6 1.3 1 23 80 102 80 103 0.90 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 CTCFL-211 - 403 1e-24 85.1 101.0 5 11 7.2e-06 0.016 16.0 4.3 1 23 108 130 108 131 0.84 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 CTCFL-211 - 403 1e-24 85.1 101.0 6 11 7.4e-05 0.17 12.8 2.7 1 24 136 159 136 159 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 CTCFL-211 - 403 1e-24 85.1 101.0 7 11 4.8e-05 0.11 13.4 0.2 1 24 166 189 166 189 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 CTCFL-211 - 403 1e-24 85.1 101.0 8 11 1.2e-06 0.0026 18.5 2.0 2 23 197 218 196 219 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 CTCFL-211 - 403 1e-24 85.1 101.0 9 11 0.00084 1.9 9.6 6.6 1 23 224 246 224 247 0.84 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 CTCFL-211 - 403 1e-24 85.1 101.0 10 11 0.00033 0.75 10.8 4.9 1 24 252 275 252 275 0.90 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 CTCFL-211 - 403 1e-24 85.1 101.0 11 11 0.00018 0.4 11.6 2.9 1 21 284 304 284 306 0.92 C2H2-type zinc finger zf-H2C2_5 PF13909.6 26 CTCFL-211 - 403 3.5e-10 39.5 29.4 1 11 0.002 4.6 7.1 2.2 8 25 2 18 2 19 0.93 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 CTCFL-211 - 403 3.5e-10 39.5 29.4 2 11 0.049 1.1e+02 2.7 0.4 16 26 38 47 36 47 0.94 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 CTCFL-211 - 403 3.5e-10 39.5 29.4 3 11 0.0049 11 5.9 2.4 1 25 51 75 51 76 0.96 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 CTCFL-211 - 403 3.5e-10 39.5 29.4 4 11 1.7e-08 3.9e-05 23.3 1.2 1 26 80 104 80 104 0.98 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 CTCFL-211 - 403 3.5e-10 39.5 29.4 5 11 3.2e-08 7.1e-05 22.5 6.0 1 26 108 132 108 132 0.97 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 CTCFL-211 - 403 3.5e-10 39.5 29.4 6 11 0.041 91 2.9 0.1 12 25 147 160 146 161 0.86 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 CTCFL-211 - 403 3.5e-10 39.5 29.4 7 11 0.0006 1.3 8.8 0.9 1 24 166 189 166 190 0.95 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 CTCFL-211 - 403 3.5e-10 39.5 29.4 8 11 4.6 1e+04 -3.6 6.6 2 24 197 218 196 220 0.62 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 CTCFL-211 - 403 3.5e-10 39.5 29.4 9 11 1.4e-07 0.00032 20.4 7.1 1 26 224 248 224 248 0.98 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 CTCFL-211 - 403 3.5e-10 39.5 29.4 10 11 5.7 1.3e+04 -3.9 3.8 1 6 284 289 284 289 0.91 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 CTCFL-211 - 403 3.5e-10 39.5 29.4 11 11 0.77 1.7e+03 -1.2 0.3 15 21 298 304 297 305 0.87 C2H2-type zinc-finger domain # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/CTCFL-211.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/CTCFL-211.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/CTCFL-211.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/CTCFL-211.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/CTCFL-211.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:53:49 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 CTCFL-212 - 422 2.1e-45 151.2 99.7 1 11 0.32 6.3e+02 1.1 0.2 14 23 51 60 40 63 0.72 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 CTCFL-212 - 422 2.1e-45 151.2 99.7 2 11 8.4e-10 1.7e-06 28.2 5.9 2 25 67 90 66 91 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 CTCFL-212 - 422 2.1e-45 151.2 99.7 3 11 1.8e-08 3.6e-05 24.0 0.3 2 26 95 119 95 119 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 CTCFL-212 - 422 2.1e-45 151.2 99.7 4 11 1.1e-07 0.00022 21.5 4.1 2 24 123 146 122 147 0.90 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 CTCFL-212 - 422 2.1e-45 151.2 99.7 5 11 7e-09 1.4e-05 25.3 2.6 2 23 152 173 151 175 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 CTCFL-212 - 422 2.1e-45 151.2 99.7 6 11 4.9e-10 9.8e-07 28.9 5.2 2 25 180 203 179 204 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 CTCFL-212 - 422 2.1e-45 151.2 99.7 7 11 0.0018 3.7 8.2 1.3 5 21 211 229 208 230 0.79 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 CTCFL-212 - 422 2.1e-45 151.2 99.7 8 11 0.11 2.2e+02 2.5 0.2 5 24 241 262 239 263 0.74 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 CTCFL-212 - 422 2.1e-45 151.2 99.7 9 11 6.6e-07 0.0013 19.0 6.3 1 25 267 291 267 292 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 CTCFL-212 - 422 2.1e-45 151.2 99.7 10 11 9.8e-10 2e-06 28.0 3.9 2 25 296 319 295 320 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 CTCFL-212 - 422 2.1e-45 151.2 99.7 11 11 3.2e-06 0.0064 16.9 0.8 2 25 324 351 324 352 0.84 Zinc-finger double domain zf-C2H2 PF00096.26 23 CTCFL-212 - 422 4.1e-31 105.7 107.9 1 11 0.0015 3 8.5 5.4 1 23 52 74 52 74 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 CTCFL-212 - 422 4.1e-31 105.7 107.9 2 11 0.0001 0.2 12.2 4.6 3 23 82 102 80 102 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 CTCFL-212 - 422 4.1e-31 105.7 107.9 3 11 1.4e-08 2.7e-05 24.4 0.8 1 23 108 131 108 131 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 CTCFL-212 - 422 4.1e-31 105.7 107.9 4 11 3e-05 0.059 13.8 1.2 1 23 137 159 137 159 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 CTCFL-212 - 422 4.1e-31 105.7 107.9 5 11 1.1e-05 0.022 15.2 5.8 1 23 165 187 165 187 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 CTCFL-212 - 422 4.1e-31 105.7 107.9 6 11 6.9e-06 0.014 15.8 3.5 1 23 193 216 193 216 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 CTCFL-212 - 422 4.1e-31 105.7 107.9 7 11 7e-06 0.014 15.8 0.3 1 23 223 246 223 246 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 CTCFL-212 - 422 4.1e-31 105.7 107.9 8 11 2.3e-05 0.047 14.2 1.7 2 23 254 275 253 275 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 CTCFL-212 - 422 4.1e-31 105.7 107.9 9 11 3.1e-05 0.062 13.8 8.3 1 23 281 303 281 303 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 CTCFL-212 - 422 4.1e-31 105.7 107.9 10 11 1.3e-05 0.026 15.0 5.4 1 23 309 332 309 332 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 CTCFL-212 - 422 4.1e-31 105.7 107.9 11 11 6.6e-05 0.13 12.8 0.1 1 13 341 353 341 357 0.91 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 CTCFL-212 - 422 1.3e-25 87.8 101.1 1 11 0.00011 0.21 12.5 3.7 1 23 52 74 52 75 0.88 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 CTCFL-212 - 422 1.3e-25 87.8 101.1 2 11 3e-05 0.061 14.2 3.3 2 23 81 102 80 103 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 CTCFL-212 - 422 1.3e-25 87.8 101.1 3 11 1.2e-05 0.023 15.5 0.5 1 24 108 131 108 131 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 CTCFL-212 - 422 1.3e-25 87.8 101.1 4 11 5.1e-05 0.1 13.5 1.3 1 23 137 159 137 160 0.90 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 CTCFL-212 - 422 1.3e-25 87.8 101.1 5 11 8.6e-06 0.017 15.9 4.3 1 23 165 187 165 188 0.84 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 CTCFL-212 - 422 1.3e-25 87.8 101.1 6 11 8.8e-05 0.18 12.8 2.7 1 24 193 216 193 216 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 CTCFL-212 - 422 1.3e-25 87.8 101.1 7 11 5.8e-05 0.11 13.3 0.2 1 24 223 246 223 246 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 CTCFL-212 - 422 1.3e-25 87.8 101.1 8 11 1.4e-06 0.0028 18.4 2.0 2 23 254 275 253 276 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 CTCFL-212 - 422 1.3e-25 87.8 101.1 9 11 0.001 2 9.5 6.6 1 23 281 303 281 304 0.84 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 CTCFL-212 - 422 1.3e-25 87.8 101.1 10 11 0.0004 0.79 10.7 4.9 1 24 309 332 309 332 0.90 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 CTCFL-212 - 422 1.3e-25 87.8 101.1 11 11 0.0042 8.4 7.5 0.3 1 12 341 352 341 355 0.90 C2H2-type zinc finger zf-H2C2_5 PF13909.6 26 CTCFL-212 - 422 8.9e-11 41.3 96.6 1 10 0.00024 0.49 10.2 5.0 1 25 52 75 52 76 0.94 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 CTCFL-212 - 422 8.9e-11 41.3 96.6 2 10 0.059 1.2e+02 2.6 0.4 16 26 95 104 93 104 0.94 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 CTCFL-212 - 422 8.9e-11 41.3 96.6 3 10 0.0058 12 5.8 2.4 1 25 108 132 108 133 0.96 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 CTCFL-212 - 422 8.9e-11 41.3 96.6 4 10 2.1e-08 4.1e-05 23.2 1.2 1 26 137 161 137 161 0.98 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 CTCFL-212 - 422 8.9e-11 41.3 96.6 5 10 3.8e-08 7.5e-05 22.4 6.0 1 26 165 189 165 189 0.97 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 CTCFL-212 - 422 8.9e-11 41.3 96.6 6 10 0.048 96 2.9 0.1 12 25 204 217 203 218 0.86 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 CTCFL-212 - 422 8.9e-11 41.3 96.6 7 10 0.00071 1.4 8.7 0.9 1 24 223 246 223 247 0.95 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 CTCFL-212 - 422 8.9e-11 41.3 96.6 8 10 5.7 1.1e+04 -3.8 6.6 2 24 254 275 253 277 0.62 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 CTCFL-212 - 422 8.9e-11 41.3 96.6 9 10 1.7e-07 0.00034 20.3 7.1 1 26 281 305 281 305 0.98 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 CTCFL-212 - 422 8.9e-11 41.3 96.6 10 10 6.7 1.3e+04 -4.0 3.8 1 6 341 346 341 346 0.91 C2H2-type zinc-finger domain # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/CTCFL-212.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/CTCFL-212.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/CTCFL-212.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/CTCFL-212.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/CTCFL-212.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:53:50 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 CTCFL-213 - 426 1.7e-24 85.1 46.2 1 6 0.36 6.4e+02 1.1 0.2 14 23 256 265 245 268 0.72 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 CTCFL-213 - 426 1.7e-24 85.1 46.2 2 6 9.5e-10 1.7e-06 28.2 5.9 2 25 272 295 271 296 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 CTCFL-213 - 426 1.7e-24 85.1 46.2 3 6 2e-08 3.6e-05 24.0 0.3 2 26 300 324 300 324 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 CTCFL-213 - 426 1.7e-24 85.1 46.2 4 6 1.2e-07 0.00022 21.5 4.1 2 24 328 351 327 352 0.90 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 CTCFL-213 - 426 1.7e-24 85.1 46.2 5 6 7.9e-09 1.4e-05 25.3 2.6 2 23 357 378 356 380 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 CTCFL-213 - 426 1.7e-24 85.1 46.2 6 6 0.0011 2 9.0 0.7 2 12 385 395 384 397 0.90 Zinc-finger double domain zf-C2H2 PF00096.26 23 CTCFL-213 - 426 1.2e-13 50.7 47.6 1 5 0.0017 3.1 8.4 5.4 1 23 257 279 257 279 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 CTCFL-213 - 426 1.2e-13 50.7 47.6 2 5 0.00011 0.2 12.1 4.6 3 23 287 307 285 307 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 CTCFL-213 - 426 1.2e-13 50.7 47.6 3 5 1.5e-08 2.7e-05 24.4 0.8 1 23 313 336 313 336 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 CTCFL-213 - 426 1.2e-13 50.7 47.6 4 5 3.3e-05 0.06 13.8 1.2 1 23 342 364 342 364 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 CTCFL-213 - 426 1.2e-13 50.7 47.6 5 5 1.2e-05 0.022 15.2 5.8 1 23 370 392 370 392 0.99 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 CTCFL-213 - 426 4e-13 49.0 42.3 1 5 0.00012 0.22 12.5 3.7 1 23 257 279 257 280 0.88 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 CTCFL-213 - 426 4e-13 49.0 42.3 2 5 3.4e-05 0.061 14.2 3.3 2 23 286 307 285 308 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 CTCFL-213 - 426 4e-13 49.0 42.3 3 5 1.3e-05 0.024 15.5 0.5 1 24 313 336 313 336 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 CTCFL-213 - 426 4e-13 49.0 42.3 4 5 5.7e-05 0.1 13.5 1.3 1 23 342 364 342 365 0.90 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 CTCFL-213 - 426 4e-13 49.0 42.3 5 5 9.7e-06 0.017 15.9 4.3 1 23 370 392 370 393 0.84 C2H2-type zinc finger zf-H2C2_5 PF13909.6 26 CTCFL-213 - 426 5e-11 42.1 43.7 1 5 0.00027 0.49 10.2 5.0 1 25 257 280 257 281 0.94 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 CTCFL-213 - 426 5e-11 42.1 43.7 2 5 0.066 1.2e+02 2.6 0.4 16 26 300 309 298 309 0.94 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 CTCFL-213 - 426 5e-11 42.1 43.7 3 5 0.0066 12 5.8 2.4 1 25 313 337 313 338 0.96 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 CTCFL-213 - 426 5e-11 42.1 43.7 4 5 2.3e-08 4.2e-05 23.2 1.2 1 26 342 366 342 366 0.98 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 CTCFL-213 - 426 5e-11 42.1 43.7 5 5 4.2e-08 7.6e-05 22.4 6.0 1 26 370 394 370 394 0.97 C2H2-type zinc-finger domain # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/CTCFL-213.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/CTCFL-213.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/CTCFL-213.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/CTCFL-213.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/CTCFL-213.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:53:50 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 CTCFL-214 - 164 1e-27 95.2 41.3 1 5 3.6e-10 4.7e-07 30.0 5.9 2 26 10 34 9 34 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 CTCFL-214 - 164 1e-27 95.2 41.3 2 5 7.8e-09 1e-05 25.7 0.3 2 26 38 62 38 62 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 CTCFL-214 - 164 1e-27 95.2 41.3 3 5 4.8e-08 6.1e-05 23.3 4.1 2 24 66 89 65 90 0.90 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 CTCFL-214 - 164 1e-27 95.2 41.3 4 5 3.1e-09 4e-06 27.0 2.6 2 23 95 116 94 118 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 CTCFL-214 - 164 1e-27 95.2 41.3 5 5 0.0005 0.64 10.5 0.7 2 12 123 133 122 135 0.90 Zinc-finger double domain zf-C2H2 PF00096.26 23 CTCFL-214 - 164 1.4e-15 56.8 42.9 1 5 0.0056 7.2 7.3 1.4 11 23 5 17 2 17 0.88 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 CTCFL-214 - 164 1.4e-15 56.8 42.9 2 5 4.5e-05 0.058 13.9 4.6 3 23 25 45 23 45 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 CTCFL-214 - 164 1.4e-15 56.8 42.9 3 5 5.9e-09 7.5e-06 26.1 0.8 1 23 51 74 51 74 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 CTCFL-214 - 164 1.4e-15 56.8 42.9 4 5 1.3e-05 0.017 15.6 1.2 1 23 80 102 80 102 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 CTCFL-214 - 164 1.4e-15 56.8 42.9 5 5 4.8e-06 0.0062 16.9 5.8 1 23 108 130 108 130 0.99 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 CTCFL-214 - 164 5.7e-14 51.6 37.5 1 5 0.0096 12 7.0 0.5 12 23 6 17 1 18 0.73 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 CTCFL-214 - 164 5.7e-14 51.6 37.5 2 5 1.3e-05 0.017 15.9 3.3 2 23 24 45 23 46 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 CTCFL-214 - 164 5.7e-14 51.6 37.5 3 5 5e-06 0.0064 17.2 0.5 1 24 51 74 51 74 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 CTCFL-214 - 164 5.7e-14 51.6 37.5 4 5 2.2e-05 0.028 15.2 1.3 1 23 80 102 80 103 0.90 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 CTCFL-214 - 164 5.7e-14 51.6 37.5 5 5 3.7e-06 0.0047 17.6 4.3 1 23 108 130 108 131 0.84 C2H2-type zinc finger zf-H2C2_5 PF13909.6 26 CTCFL-214 - 164 1e-12 47.5 40.6 1 5 0.0012 1.5 8.6 2.2 8 25 2 18 2 19 0.93 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 CTCFL-214 - 164 1e-12 47.5 40.6 2 5 0.03 39 4.1 0.4 16 26 38 47 36 47 0.94 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 CTCFL-214 - 164 1e-12 47.5 40.6 3 5 0.0026 3.3 7.6 2.4 1 25 51 75 51 76 0.96 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 CTCFL-214 - 164 1e-12 47.5 40.6 4 5 9.1e-09 1.2e-05 25.0 1.2 1 26 80 104 80 104 0.98 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 CTCFL-214 - 164 1e-12 47.5 40.6 5 5 1.6e-08 2.1e-05 24.2 6.0 1 26 108 132 108 132 0.98 C2H2-type zinc-finger domain # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/CTCFL-214.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/CTCFL-214.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/CTCFL-214.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/CTCFL-214.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/CTCFL-214.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:53:51 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 CTCFL-215 - 404 2.1e-17 62.6 28.5 1 4 0.2 6e+02 1.2 0.2 14 23 256 265 245 268 0.72 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 CTCFL-215 - 404 2.1e-17 62.6 28.5 2 4 5.3e-10 1.6e-06 28.3 5.9 2 25 272 295 271 296 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 CTCFL-215 - 404 2.1e-17 62.6 28.5 3 4 1.1e-08 3.4e-05 24.1 0.3 2 26 300 324 300 324 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 CTCFL-215 - 404 2.1e-17 62.6 28.5 4 4 7e-08 0.00021 21.6 4.1 2 24 328 351 327 352 0.90 Zinc-finger double domain zf-C2H2 PF00096.26 23 CTCFL-215 - 404 1.1e-07 31.8 31.1 1 4 0.00096 2.9 8.5 5.4 1 23 257 279 257 279 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 CTCFL-215 - 404 1.1e-07 31.8 31.1 2 4 6.4e-05 0.19 12.2 4.6 3 23 287 307 285 307 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 CTCFL-215 - 404 1.1e-07 31.8 31.1 3 4 8.6e-09 2.6e-05 24.4 0.8 1 23 313 336 313 336 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 CTCFL-215 - 404 1.1e-07 31.8 31.1 4 4 0.2 6e+02 1.2 0.2 1 8 342 349 342 357 0.85 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 CTCFL-215 - 404 2.5e-07 31.0 27.3 1 4 6.8e-05 0.2 12.6 3.7 1 23 257 279 257 280 0.88 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 CTCFL-215 - 404 2.5e-07 31.0 27.3 2 4 1.9e-05 0.057 14.3 3.3 2 23 286 307 285 308 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 CTCFL-215 - 404 2.5e-07 31.0 27.3 3 4 7.4e-06 0.022 15.6 0.5 1 24 313 336 313 336 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 CTCFL-215 - 404 2.5e-07 31.0 27.3 4 4 0.11 3.4e+02 2.5 0.3 1 12 342 351 342 358 0.82 C2H2-type zinc finger # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/CTCFL-215.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/CTCFL-215.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/CTCFL-215.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/CTCFL-215.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/CTCFL-215.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:53:51 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 CTCFL-216 - 663 7.4e-43 143.1 100.0 1 11 0.43 1.1e+03 0.3 0.1 14 23 256 265 247 268 0.71 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 CTCFL-216 - 663 7.4e-43 143.1 100.0 2 11 1.1e-09 2.9e-06 27.5 5.9 2 25 272 295 271 296 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 CTCFL-216 - 663 7.4e-43 143.1 100.0 3 11 2.4e-08 6.2e-05 23.2 0.3 2 26 300 324 300 324 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 CTCFL-216 - 663 7.4e-43 143.1 100.0 4 11 1.5e-07 0.00038 20.8 4.1 2 24 328 351 327 352 0.90 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 CTCFL-216 - 663 7.4e-43 143.1 100.0 5 11 9.4e-09 2.4e-05 24.5 2.6 2 23 357 378 356 380 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 CTCFL-216 - 663 7.4e-43 143.1 100.0 6 11 6.6e-10 1.7e-06 28.2 5.2 2 25 385 408 384 409 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 CTCFL-216 - 663 7.4e-43 143.1 100.0 7 11 0.0024 6.2 7.4 1.3 5 21 416 434 413 435 0.79 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 CTCFL-216 - 663 7.4e-43 143.1 100.0 8 11 0.16 4e+02 1.7 0.3 5 24 446 467 445 468 0.73 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 CTCFL-216 - 663 7.4e-43 143.1 100.0 9 11 8.8e-07 0.0023 18.3 6.3 1 25 472 496 472 497 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 CTCFL-216 - 663 7.4e-43 143.1 100.0 10 11 1.3e-09 3.4e-06 27.2 3.9 2 25 501 524 500 525 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 CTCFL-216 - 663 7.4e-43 143.1 100.0 11 11 4.3e-06 0.011 16.1 0.8 2 25 529 556 529 557 0.84 Zinc-finger double domain zf-C2H2 PF00096.26 23 CTCFL-216 - 663 2.7e-30 103.1 111.4 1 11 0.002 5.2 7.7 5.4 1 23 257 279 257 279 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 CTCFL-216 - 663 2.7e-30 103.1 111.4 2 11 0.00014 0.35 11.4 4.6 3 23 287 307 285 307 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 CTCFL-216 - 663 2.7e-30 103.1 111.4 3 11 1.8e-08 4.6e-05 23.6 0.8 1 23 313 336 313 336 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 CTCFL-216 - 663 2.7e-30 103.1 111.4 4 11 4e-05 0.1 13.1 1.2 1 23 342 364 342 364 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 CTCFL-216 - 663 2.7e-30 103.1 111.4 5 11 1.5e-05 0.037 14.5 5.8 1 23 370 392 370 392 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 CTCFL-216 - 663 2.7e-30 103.1 111.4 6 11 9.2e-06 0.024 15.1 3.5 1 23 398 421 398 421 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 CTCFL-216 - 663 2.7e-30 103.1 111.4 7 11 9.3e-06 0.024 15.1 0.3 1 23 428 451 428 451 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 CTCFL-216 - 663 2.7e-30 103.1 111.4 8 11 3.1e-05 0.08 13.4 1.7 2 23 459 480 458 480 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 CTCFL-216 - 663 2.7e-30 103.1 111.4 9 11 4.2e-05 0.11 13.0 8.3 1 23 486 508 486 508 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 CTCFL-216 - 663 2.7e-30 103.1 111.4 10 11 1.7e-05 0.044 14.2 5.4 1 23 514 537 514 537 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 CTCFL-216 - 663 2.7e-30 103.1 111.4 11 11 2.5e-07 0.00064 20.0 1.0 1 19 546 564 546 567 0.96 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 CTCFL-216 - 663 1.2e-23 81.8 105.8 1 11 0.00014 0.37 11.8 3.7 1 23 257 279 257 280 0.88 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 CTCFL-216 - 663 1.2e-23 81.8 105.8 2 11 4.1e-05 0.1 13.5 3.3 2 23 286 307 285 308 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 CTCFL-216 - 663 1.2e-23 81.8 105.8 3 11 1.6e-05 0.04 14.7 0.5 1 24 313 336 313 336 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 CTCFL-216 - 663 1.2e-23 81.8 105.8 4 11 6.8e-05 0.17 12.8 1.3 1 23 342 364 342 365 0.90 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 CTCFL-216 - 663 1.2e-23 81.8 105.8 5 11 1.2e-05 0.03 15.2 4.3 1 23 370 392 370 393 0.84 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 CTCFL-216 - 663 1.2e-23 81.8 105.8 6 11 0.00012 0.3 12.0 2.7 1 24 398 421 398 421 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 CTCFL-216 - 663 1.2e-23 81.8 105.8 7 11 7.8e-05 0.2 12.6 0.2 1 24 428 451 428 451 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 CTCFL-216 - 663 1.2e-23 81.8 105.8 8 11 1.9e-06 0.0048 17.6 2.0 2 23 459 480 458 481 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 CTCFL-216 - 663 1.2e-23 81.8 105.8 9 11 0.0013 3.4 8.7 6.6 1 23 486 508 486 509 0.84 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 CTCFL-216 - 663 1.2e-23 81.8 105.8 10 11 0.00054 1.4 10.0 4.9 1 24 514 537 514 537 0.90 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 CTCFL-216 - 663 1.2e-23 81.8 105.8 11 11 0.00028 0.73 10.8 2.9 1 21 546 566 546 568 0.92 C2H2-type zinc finger zf-H2C2_5 PF13909.6 26 CTCFL-216 - 663 5.7e-09 35.6 29.4 1 11 0.00032 0.83 9.5 5.0 1 25 257 280 257 281 0.94 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 CTCFL-216 - 663 5.7e-09 35.6 29.4 2 11 0.075 1.9e+02 1.9 0.4 16 26 300 309 298 309 0.94 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 CTCFL-216 - 663 5.7e-09 35.6 29.4 3 11 0.0078 20 5.1 2.4 1 25 313 337 313 338 0.96 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 CTCFL-216 - 663 5.7e-09 35.6 29.4 4 11 2.8e-08 7.1e-05 22.5 1.2 1 26 342 366 342 366 0.98 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 CTCFL-216 - 663 5.7e-09 35.6 29.4 5 11 5e-08 0.00013 21.7 6.0 1 26 370 394 370 394 0.97 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 CTCFL-216 - 663 5.7e-09 35.6 29.4 6 11 0.062 1.6e+02 2.2 0.1 12 25 409 422 408 423 0.86 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 CTCFL-216 - 663 5.7e-09 35.6 29.4 7 11 0.00071 1.8 8.4 0.5 1 24 428 451 428 452 0.95 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 CTCFL-216 - 663 5.7e-09 35.6 29.4 8 11 5.3 1.4e+04 -4.0 6.1 2 24 459 480 458 482 0.61 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 CTCFL-216 - 663 5.7e-09 35.6 29.4 9 11 2.3e-07 0.00058 19.6 7.1 1 26 486 510 486 510 0.98 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 CTCFL-216 - 663 5.7e-09 35.6 29.4 10 11 7 1.8e+04 -4.7 3.8 1 6 546 551 546 551 0.91 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 CTCFL-216 - 663 5.7e-09 35.6 29.4 11 11 1.5 3.8e+03 -2.3 0.5 15 21 560 566 560 567 0.86 C2H2-type zinc-finger domain # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/CTCFL-216.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/CTCFL-216.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/CTCFL-216.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/CTCFL-216.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/CTCFL-216.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:53:51 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 CTCFL-217 - 627 3.3e-43 144.3 99.8 1 11 0.39 1e+03 0.4 0.1 14 23 256 265 246 268 0.72 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 CTCFL-217 - 627 3.3e-43 144.3 99.8 2 11 1.1e-09 2.7e-06 27.5 5.9 2 25 272 295 271 296 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 CTCFL-217 - 627 3.3e-43 144.3 99.8 3 11 2.3e-08 5.8e-05 23.3 0.3 2 26 300 324 300 324 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 CTCFL-217 - 627 3.3e-43 144.3 99.8 4 11 1.4e-07 0.00035 20.8 4.1 2 24 328 351 327 352 0.90 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 CTCFL-217 - 627 3.3e-43 144.3 99.8 5 11 8.8e-09 2.2e-05 24.6 2.6 2 23 357 378 356 380 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 CTCFL-217 - 627 3.3e-43 144.3 99.8 6 11 6.2e-10 1.6e-06 28.3 5.2 2 25 385 408 384 409 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 CTCFL-217 - 627 3.3e-43 144.3 99.8 7 11 0.0023 5.8 7.5 1.3 5 21 416 434 413 435 0.79 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 CTCFL-217 - 627 3.3e-43 144.3 99.8 8 11 0.15 3.8e+02 1.8 0.3 5 24 446 467 445 468 0.73 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 CTCFL-217 - 627 3.3e-43 144.3 99.8 9 11 8.3e-07 0.0021 18.4 6.3 1 25 472 496 472 497 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 CTCFL-217 - 627 3.3e-43 144.3 99.8 10 11 1.2e-09 3.2e-06 27.3 3.9 2 25 501 524 500 525 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 CTCFL-217 - 627 3.3e-43 144.3 99.8 11 11 4.1e-06 0.01 16.2 0.8 2 25 529 556 529 557 0.84 Zinc-finger double domain zf-C2H2 PF00096.26 23 CTCFL-217 - 627 6.5e-29 98.8 107.9 1 11 0.0019 4.9 7.8 5.4 1 23 257 279 257 279 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 CTCFL-217 - 627 6.5e-29 98.8 107.9 2 11 0.00013 0.32 11.5 4.6 3 23 287 307 285 307 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 CTCFL-217 - 627 6.5e-29 98.8 107.9 3 11 1.7e-08 4.3e-05 23.7 0.8 1 23 313 336 313 336 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 CTCFL-217 - 627 6.5e-29 98.8 107.9 4 11 3.7e-05 0.095 13.2 1.2 1 23 342 364 342 364 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 CTCFL-217 - 627 6.5e-29 98.8 107.9 5 11 1.4e-05 0.035 14.6 5.8 1 23 370 392 370 392 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 CTCFL-217 - 627 6.5e-29 98.8 107.9 6 11 8.6e-06 0.022 15.2 3.5 1 23 398 421 398 421 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 CTCFL-217 - 627 6.5e-29 98.8 107.9 7 11 8.8e-06 0.022 15.2 0.3 1 23 428 451 428 451 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 CTCFL-217 - 627 6.5e-29 98.8 107.9 8 11 2.9e-05 0.075 13.5 1.7 2 23 459 480 458 480 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 CTCFL-217 - 627 6.5e-29 98.8 107.9 9 11 3.9e-05 0.1 13.1 8.3 1 23 486 508 486 508 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 CTCFL-217 - 627 6.5e-29 98.8 107.9 10 11 1.6e-05 0.042 14.3 5.4 1 23 514 537 514 537 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 CTCFL-217 - 627 6.5e-29 98.8 107.9 11 11 8.1e-05 0.21 12.1 0.1 1 13 546 558 546 562 0.91 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 CTCFL-217 - 627 2.1e-23 81.0 101.1 1 11 0.00013 0.35 11.8 3.7 1 23 257 279 257 280 0.88 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 CTCFL-217 - 627 2.1e-23 81.0 101.1 2 11 3.8e-05 0.098 13.6 3.3 2 23 286 307 285 308 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 CTCFL-217 - 627 2.1e-23 81.0 101.1 3 11 1.5e-05 0.038 14.8 0.5 1 24 313 336 313 336 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 CTCFL-217 - 627 2.1e-23 81.0 101.1 4 11 6.4e-05 0.16 12.9 1.3 1 23 342 364 342 365 0.90 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 CTCFL-217 - 627 2.1e-23 81.0 101.1 5 11 1.1e-05 0.028 15.2 4.3 1 23 370 392 370 393 0.84 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 CTCFL-217 - 627 2.1e-23 81.0 101.1 6 11 0.00011 0.28 12.1 2.7 1 24 398 421 398 421 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 CTCFL-217 - 627 2.1e-23 81.0 101.1 7 11 7.3e-05 0.19 12.7 0.2 1 24 428 451 428 451 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 CTCFL-217 - 627 2.1e-23 81.0 101.1 8 11 1.7e-06 0.0045 17.7 2.0 2 23 459 480 458 481 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 CTCFL-217 - 627 2.1e-23 81.0 101.1 9 11 0.0013 3.2 8.8 6.6 1 23 486 508 486 509 0.84 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 CTCFL-217 - 627 2.1e-23 81.0 101.1 10 11 0.0005 1.3 10.1 4.9 1 24 514 537 514 537 0.90 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 CTCFL-217 - 627 2.1e-23 81.0 101.1 11 11 0.0052 13 6.9 0.3 1 12 546 557 546 560 0.90 C2H2-type zinc finger zf-H2C2_5 PF13909.6 26 CTCFL-217 - 627 4.2e-09 36.0 95.6 1 10 0.0003 0.77 9.6 5.0 1 25 257 280 257 281 0.94 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 CTCFL-217 - 627 4.2e-09 36.0 95.6 2 10 0.071 1.8e+02 2.0 0.4 16 26 300 309 298 309 0.94 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 CTCFL-217 - 627 4.2e-09 36.0 95.6 3 10 0.0073 19 5.1 2.4 1 25 313 337 313 338 0.96 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 CTCFL-217 - 627 4.2e-09 36.0 95.6 4 10 2.6e-08 6.6e-05 22.6 1.2 1 26 342 366 342 366 0.98 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 CTCFL-217 - 627 4.2e-09 36.0 95.6 5 10 4.7e-08 0.00012 21.7 6.0 1 26 370 394 370 394 0.97 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 CTCFL-217 - 627 4.2e-09 36.0 95.6 6 10 0.058 1.5e+02 2.3 0.1 12 25 409 422 408 423 0.86 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 CTCFL-217 - 627 4.2e-09 36.0 95.6 7 10 0.00068 1.7 8.4 0.6 1 24 428 451 428 452 0.95 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 CTCFL-217 - 627 4.2e-09 36.0 95.6 8 10 6.3 1.6e+04 -4.2 6.5 2 24 459 480 458 482 0.61 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 CTCFL-217 - 627 4.2e-09 36.0 95.6 9 10 2.1e-07 0.00054 19.6 7.1 1 26 486 510 486 510 0.98 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 CTCFL-217 - 627 4.2e-09 36.0 95.6 10 10 7 1.8e+04 -4.6 3.8 1 6 546 551 546 551 0.91 C2H2-type zinc-finger domain # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/CTCFL-217.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/CTCFL-217.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/CTCFL-217.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/CTCFL-217.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/CTCFL-217.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:53:52 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 CTCFL-218 - 665 8.2e-43 143.0 100.0 1 11 0.43 1.1e+03 0.3 0.1 14 23 256 265 247 268 0.71 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 CTCFL-218 - 665 8.2e-43 143.0 100.0 2 11 1.1e-09 2.9e-06 27.4 5.9 2 25 272 295 271 296 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 CTCFL-218 - 665 8.2e-43 143.0 100.0 3 11 2.4e-08 6.2e-05 23.2 0.3 2 26 300 324 300 324 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 CTCFL-218 - 665 8.2e-43 143.0 100.0 4 11 1.5e-07 0.00038 20.8 4.1 2 24 328 351 327 352 0.90 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 CTCFL-218 - 665 8.2e-43 143.0 100.0 5 11 9.4e-09 2.4e-05 24.5 2.6 2 23 357 378 356 380 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 CTCFL-218 - 665 8.2e-43 143.0 100.0 6 11 6.6e-10 1.7e-06 28.2 5.2 2 25 385 408 384 409 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 CTCFL-218 - 665 8.2e-43 143.0 100.0 7 11 0.0024 6.2 7.4 1.3 5 21 416 434 413 435 0.79 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 CTCFL-218 - 665 8.2e-43 143.0 100.0 8 11 0.16 4e+02 1.7 0.3 5 24 446 467 445 468 0.73 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 CTCFL-218 - 665 8.2e-43 143.0 100.0 9 11 8.9e-07 0.0023 18.3 6.3 1 25 472 496 472 497 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 CTCFL-218 - 665 8.2e-43 143.0 100.0 10 11 1.3e-09 3.4e-06 27.2 3.9 2 25 501 524 500 525 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 CTCFL-218 - 665 8.2e-43 143.0 100.0 11 11 4.3e-06 0.011 16.1 0.8 2 25 529 556 529 557 0.84 Zinc-finger double domain zf-C2H2 PF00096.26 23 CTCFL-218 - 665 2.7e-30 103.1 111.4 1 11 0.002 5.2 7.7 5.4 1 23 257 279 257 279 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 CTCFL-218 - 665 2.7e-30 103.1 111.4 2 11 0.00014 0.35 11.4 4.6 3 23 287 307 285 307 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 CTCFL-218 - 665 2.7e-30 103.1 111.4 3 11 1.8e-08 4.7e-05 23.6 0.8 1 23 313 336 313 336 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 CTCFL-218 - 665 2.7e-30 103.1 111.4 4 11 4e-05 0.1 13.1 1.2 1 23 342 364 342 364 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 CTCFL-218 - 665 2.7e-30 103.1 111.4 5 11 1.5e-05 0.038 14.5 5.8 1 23 370 392 370 392 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 CTCFL-218 - 665 2.7e-30 103.1 111.4 6 11 9.3e-06 0.024 15.1 3.5 1 23 398 421 398 421 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 CTCFL-218 - 665 2.7e-30 103.1 111.4 7 11 9.4e-06 0.024 15.1 0.3 1 23 428 451 428 451 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 CTCFL-218 - 665 2.7e-30 103.1 111.4 8 11 3.1e-05 0.08 13.4 1.7 2 23 459 480 458 480 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 CTCFL-218 - 665 2.7e-30 103.1 111.4 9 11 4.2e-05 0.11 13.0 8.3 1 23 486 508 486 508 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 CTCFL-218 - 665 2.7e-30 103.1 111.4 10 11 1.7e-05 0.045 14.2 5.4 1 23 514 537 514 537 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 CTCFL-218 - 665 2.7e-30 103.1 111.4 11 11 2.5e-07 0.00064 20.0 1.0 1 19 546 564 546 567 0.96 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 CTCFL-218 - 665 1.2e-23 81.8 105.8 1 11 0.00014 0.37 11.8 3.7 1 23 257 279 257 280 0.88 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 CTCFL-218 - 665 1.2e-23 81.8 105.8 2 11 4.1e-05 0.1 13.5 3.3 2 23 286 307 285 308 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 CTCFL-218 - 665 1.2e-23 81.8 105.8 3 11 1.6e-05 0.041 14.7 0.5 1 24 313 336 313 336 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 CTCFL-218 - 665 1.2e-23 81.8 105.8 4 11 6.8e-05 0.18 12.8 1.3 1 23 342 364 342 365 0.90 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 CTCFL-218 - 665 1.2e-23 81.8 105.8 5 11 1.2e-05 0.03 15.2 4.3 1 23 370 392 370 393 0.84 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 CTCFL-218 - 665 1.2e-23 81.8 105.8 6 11 0.00012 0.3 12.0 2.7 1 24 398 421 398 421 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 CTCFL-218 - 665 1.2e-23 81.8 105.8 7 11 7.8e-05 0.2 12.6 0.2 1 24 428 451 428 451 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 CTCFL-218 - 665 1.2e-23 81.8 105.8 8 11 1.9e-06 0.0048 17.6 2.0 2 23 459 480 458 481 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 CTCFL-218 - 665 1.2e-23 81.8 105.8 9 11 0.0013 3.4 8.7 6.6 1 23 486 508 486 509 0.84 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 CTCFL-218 - 665 1.2e-23 81.8 105.8 10 11 0.00054 1.4 10.0 4.9 1 24 514 537 514 537 0.90 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 CTCFL-218 - 665 1.2e-23 81.8 105.8 11 11 0.00029 0.73 10.8 2.9 1 21 546 566 546 568 0.92 C2H2-type zinc finger zf-H2C2_5 PF13909.6 26 CTCFL-218 - 665 5.8e-09 35.5 29.4 1 11 0.00032 0.83 9.5 5.0 1 25 257 280 257 281 0.94 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 CTCFL-218 - 665 5.8e-09 35.5 29.4 2 11 0.075 1.9e+02 1.9 0.4 16 26 300 309 298 309 0.94 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 CTCFL-218 - 665 5.8e-09 35.5 29.4 3 11 0.0078 20 5.0 2.4 1 25 313 337 313 338 0.96 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 CTCFL-218 - 665 5.8e-09 35.5 29.4 4 11 2.8e-08 7.1e-05 22.5 1.2 1 26 342 366 342 366 0.98 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 CTCFL-218 - 665 5.8e-09 35.5 29.4 5 11 5e-08 0.00013 21.7 6.0 1 26 370 394 370 394 0.97 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 CTCFL-218 - 665 5.8e-09 35.5 29.4 6 11 0.062 1.6e+02 2.2 0.1 12 25 409 422 408 423 0.86 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 CTCFL-218 - 665 5.8e-09 35.5 29.4 7 11 0.00072 1.8 8.4 0.5 1 24 428 451 428 452 0.95 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 CTCFL-218 - 665 5.8e-09 35.5 29.4 8 11 5.3 1.4e+04 -4.0 6.1 2 24 459 480 458 482 0.61 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 CTCFL-218 - 665 5.8e-09 35.5 29.4 9 11 2.3e-07 0.00058 19.5 7.1 1 26 486 510 486 510 0.98 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 CTCFL-218 - 665 5.8e-09 35.5 29.4 10 11 7 1.8e+04 -4.7 3.8 1 6 546 551 546 551 0.91 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 CTCFL-218 - 665 5.8e-09 35.5 29.4 11 11 1.5 3.9e+03 -2.3 0.5 15 21 560 566 560 567 0.86 C2H2-type zinc-finger domain # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/CTCFL-218.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/CTCFL-218.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/CTCFL-218.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/CTCFL-218.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/CTCFL-218.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:53:52 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 CTCFL-219 - 426 1.7e-24 85.1 46.2 1 6 0.36 6.4e+02 1.1 0.2 14 23 256 265 245 268 0.72 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 CTCFL-219 - 426 1.7e-24 85.1 46.2 2 6 9.5e-10 1.7e-06 28.2 5.9 2 25 272 295 271 296 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 CTCFL-219 - 426 1.7e-24 85.1 46.2 3 6 2e-08 3.6e-05 24.0 0.3 2 26 300 324 300 324 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 CTCFL-219 - 426 1.7e-24 85.1 46.2 4 6 1.2e-07 0.00022 21.5 4.1 2 24 328 351 327 352 0.90 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 CTCFL-219 - 426 1.7e-24 85.1 46.2 5 6 7.9e-09 1.4e-05 25.3 2.6 2 23 357 378 356 380 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 CTCFL-219 - 426 1.7e-24 85.1 46.2 6 6 0.0011 2 9.0 0.7 2 12 385 395 384 397 0.90 Zinc-finger double domain zf-C2H2 PF00096.26 23 CTCFL-219 - 426 1.2e-13 50.7 47.6 1 5 0.0017 3.1 8.4 5.4 1 23 257 279 257 279 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 CTCFL-219 - 426 1.2e-13 50.7 47.6 2 5 0.00011 0.2 12.1 4.6 3 23 287 307 285 307 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 CTCFL-219 - 426 1.2e-13 50.7 47.6 3 5 1.5e-08 2.7e-05 24.4 0.8 1 23 313 336 313 336 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 CTCFL-219 - 426 1.2e-13 50.7 47.6 4 5 3.3e-05 0.06 13.8 1.2 1 23 342 364 342 364 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 CTCFL-219 - 426 1.2e-13 50.7 47.6 5 5 1.2e-05 0.022 15.2 5.8 1 23 370 392 370 392 0.99 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 CTCFL-219 - 426 4e-13 49.0 42.3 1 5 0.00012 0.22 12.5 3.7 1 23 257 279 257 280 0.88 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 CTCFL-219 - 426 4e-13 49.0 42.3 2 5 3.4e-05 0.061 14.2 3.3 2 23 286 307 285 308 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 CTCFL-219 - 426 4e-13 49.0 42.3 3 5 1.3e-05 0.024 15.5 0.5 1 24 313 336 313 336 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 CTCFL-219 - 426 4e-13 49.0 42.3 4 5 5.7e-05 0.1 13.5 1.3 1 23 342 364 342 365 0.90 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 CTCFL-219 - 426 4e-13 49.0 42.3 5 5 9.7e-06 0.017 15.9 4.3 1 23 370 392 370 393 0.84 C2H2-type zinc finger zf-H2C2_5 PF13909.6 26 CTCFL-219 - 426 5e-11 42.1 43.7 1 5 0.00027 0.49 10.2 5.0 1 25 257 280 257 281 0.94 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 CTCFL-219 - 426 5e-11 42.1 43.7 2 5 0.066 1.2e+02 2.6 0.4 16 26 300 309 298 309 0.94 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 CTCFL-219 - 426 5e-11 42.1 43.7 3 5 0.0066 12 5.8 2.4 1 25 313 337 313 338 0.96 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 CTCFL-219 - 426 5e-11 42.1 43.7 4 5 2.3e-08 4.2e-05 23.2 1.2 1 26 342 366 342 366 0.98 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 CTCFL-219 - 426 5e-11 42.1 43.7 5 5 4.2e-08 7.6e-05 22.4 6.0 1 26 370 394 370 394 0.97 C2H2-type zinc-finger domain # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/CTCFL-219.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/CTCFL-219.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/CTCFL-219.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/CTCFL-219.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/CTCFL-219.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:53:53 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 CTCFL-220 - 164 1e-27 95.2 41.3 1 5 3.6e-10 4.7e-07 30.0 5.9 2 26 10 34 9 34 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 CTCFL-220 - 164 1e-27 95.2 41.3 2 5 7.8e-09 1e-05 25.7 0.3 2 26 38 62 38 62 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 CTCFL-220 - 164 1e-27 95.2 41.3 3 5 4.8e-08 6.1e-05 23.3 4.1 2 24 66 89 65 90 0.90 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 CTCFL-220 - 164 1e-27 95.2 41.3 4 5 3.1e-09 4e-06 27.0 2.6 2 23 95 116 94 118 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 CTCFL-220 - 164 1e-27 95.2 41.3 5 5 0.0005 0.64 10.5 0.7 2 12 123 133 122 135 0.90 Zinc-finger double domain zf-C2H2 PF00096.26 23 CTCFL-220 - 164 1.4e-15 56.8 42.9 1 5 0.0056 7.2 7.3 1.4 11 23 5 17 2 17 0.88 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 CTCFL-220 - 164 1.4e-15 56.8 42.9 2 5 4.5e-05 0.058 13.9 4.6 3 23 25 45 23 45 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 CTCFL-220 - 164 1.4e-15 56.8 42.9 3 5 5.9e-09 7.5e-06 26.1 0.8 1 23 51 74 51 74 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 CTCFL-220 - 164 1.4e-15 56.8 42.9 4 5 1.3e-05 0.017 15.6 1.2 1 23 80 102 80 102 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 CTCFL-220 - 164 1.4e-15 56.8 42.9 5 5 4.8e-06 0.0062 16.9 5.8 1 23 108 130 108 130 0.99 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 CTCFL-220 - 164 5.7e-14 51.6 37.5 1 5 0.0096 12 7.0 0.5 12 23 6 17 1 18 0.73 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 CTCFL-220 - 164 5.7e-14 51.6 37.5 2 5 1.3e-05 0.017 15.9 3.3 2 23 24 45 23 46 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 CTCFL-220 - 164 5.7e-14 51.6 37.5 3 5 5e-06 0.0064 17.2 0.5 1 24 51 74 51 74 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 CTCFL-220 - 164 5.7e-14 51.6 37.5 4 5 2.2e-05 0.028 15.2 1.3 1 23 80 102 80 103 0.90 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 CTCFL-220 - 164 5.7e-14 51.6 37.5 5 5 3.7e-06 0.0047 17.6 4.3 1 23 108 130 108 131 0.84 C2H2-type zinc finger zf-H2C2_5 PF13909.6 26 CTCFL-220 - 164 1e-12 47.5 40.6 1 5 0.0012 1.5 8.6 2.2 8 25 2 18 2 19 0.93 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 CTCFL-220 - 164 1e-12 47.5 40.6 2 5 0.03 39 4.1 0.4 16 26 38 47 36 47 0.94 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 CTCFL-220 - 164 1e-12 47.5 40.6 3 5 0.0026 3.3 7.6 2.4 1 25 51 75 51 76 0.96 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 CTCFL-220 - 164 1e-12 47.5 40.6 4 5 9.1e-09 1.2e-05 25.0 1.2 1 26 80 104 80 104 0.98 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 CTCFL-220 - 164 1e-12 47.5 40.6 5 5 1.6e-08 2.1e-05 24.2 6.0 1 26 108 132 108 132 0.98 C2H2-type zinc-finger domain # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/CTCFL-220.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/CTCFL-220.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/CTCFL-220.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/CTCFL-220.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/CTCFL-220.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:53:53 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 CTCFL-221 - 299 8.6e-48 158.7 94.8 1 10 6.1e-10 1.1e-06 28.8 5.9 2 25 10 33 9 34 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 CTCFL-221 - 299 8.6e-48 158.7 94.8 2 10 1.3e-08 2.3e-05 24.6 0.3 2 26 38 62 38 62 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 CTCFL-221 - 299 8.6e-48 158.7 94.8 3 10 7.9e-08 0.00014 22.1 4.1 2 24 66 89 65 90 0.90 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 CTCFL-221 - 299 8.6e-48 158.7 94.8 4 10 5.1e-09 9.1e-06 25.9 2.6 2 23 95 116 94 118 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 CTCFL-221 - 299 8.6e-48 158.7 94.8 5 10 3.5e-10 6.3e-07 29.5 5.2 2 25 123 146 122 147 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 CTCFL-221 - 299 8.6e-48 158.7 94.8 6 10 0.0013 2.4 8.7 1.4 5 21 154 172 151 173 0.79 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 CTCFL-221 - 299 8.6e-48 158.7 94.8 7 10 0.08 1.4e+02 3.1 0.2 5 24 184 205 182 206 0.74 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 CTCFL-221 - 299 8.6e-48 158.7 94.8 8 10 4.7e-07 0.00085 19.6 6.3 1 25 210 234 210 235 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 CTCFL-221 - 299 8.6e-48 158.7 94.8 9 10 7.1e-10 1.3e-06 28.6 3.9 2 25 239 262 238 263 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 CTCFL-221 - 299 8.6e-48 158.7 94.8 10 10 2.3e-06 0.0041 17.5 0.8 2 25 267 294 267 295 0.84 Zinc-finger double domain zf-C2H2 PF00096.26 23 CTCFL-221 - 299 1e-31 107.6 105.7 1 11 0.0085 15 6.3 1.4 11 23 5 17 2 17 0.88 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 CTCFL-221 - 299 1e-31 107.6 105.7 2 11 7.3e-05 0.13 12.8 4.6 3 23 25 45 23 45 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 CTCFL-221 - 299 1e-31 107.6 105.7 3 11 9.7e-09 1.7e-05 25.0 0.8 1 23 51 74 51 74 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 CTCFL-221 - 299 1e-31 107.6 105.7 4 11 2.1e-05 0.038 14.4 1.2 1 23 80 102 80 102 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 CTCFL-221 - 299 1e-31 107.6 105.7 5 11 7.9e-06 0.014 15.8 5.8 1 23 108 130 108 130 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 CTCFL-221 - 299 1e-31 107.6 105.7 6 11 5e-06 0.0089 16.4 3.5 1 23 136 159 136 159 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 CTCFL-221 - 299 1e-31 107.6 105.7 7 11 5e-06 0.009 16.4 0.3 1 23 166 189 166 189 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 CTCFL-221 - 299 1e-31 107.6 105.7 8 11 1.7e-05 0.03 14.8 1.7 2 23 197 218 196 218 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 CTCFL-221 - 299 1e-31 107.6 105.7 9 11 2.2e-05 0.04 14.4 8.3 1 23 224 246 224 246 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 CTCFL-221 - 299 1e-31 107.6 105.7 10 11 9.3e-06 0.017 15.6 5.4 1 23 252 275 252 275 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 CTCFL-221 - 299 1e-31 107.6 105.7 11 11 5e-05 0.09 13.3 0.6 1 14 284 297 284 299 0.91 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 CTCFL-221 - 299 7.9e-26 88.5 96.5 1 11 0.015 27 6.0 0.5 12 23 6 17 1 18 0.73 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 CTCFL-221 - 299 7.9e-26 88.5 96.5 2 11 2.2e-05 0.039 14.8 3.3 2 23 24 45 23 46 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 CTCFL-221 - 299 7.9e-26 88.5 96.5 3 11 8.4e-06 0.015 16.1 0.5 1 24 51 74 51 74 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 CTCFL-221 - 299 7.9e-26 88.5 96.5 4 11 3.6e-05 0.065 14.1 1.3 1 23 80 102 80 103 0.90 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 CTCFL-221 - 299 7.9e-26 88.5 96.5 5 11 6.2e-06 0.011 16.5 4.3 1 23 108 130 108 131 0.84 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 CTCFL-221 - 299 7.9e-26 88.5 96.5 6 11 6.3e-05 0.11 13.4 2.7 1 24 136 159 136 159 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 CTCFL-221 - 299 7.9e-26 88.5 96.5 7 11 4.1e-05 0.074 13.9 0.2 1 24 166 189 166 189 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 CTCFL-221 - 299 7.9e-26 88.5 96.5 8 11 9.9e-07 0.0018 19.0 2.0 2 23 197 218 196 219 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 CTCFL-221 - 299 7.9e-26 88.5 96.5 9 11 0.00071 1.3 10.1 6.6 1 23 224 246 224 247 0.84 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 CTCFL-221 - 299 7.9e-26 88.5 96.5 10 11 0.00028 0.51 11.3 4.9 1 24 252 275 252 275 0.90 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 CTCFL-221 - 299 7.9e-26 88.5 96.5 11 11 0.0027 4.8 8.3 0.4 1 12 284 295 284 298 0.89 C2H2-type zinc finger zf-H2C2_5 PF13909.6 26 CTCFL-221 - 299 2.7e-11 43.0 94.9 1 10 0.0018 3.2 7.6 2.2 8 25 2 18 2 19 0.93 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 CTCFL-221 - 299 2.7e-11 43.0 94.9 2 10 0.044 79 3.1 0.4 16 26 38 47 36 47 0.94 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 CTCFL-221 - 299 2.7e-11 43.0 94.9 3 10 0.0042 7.5 6.4 2.4 1 25 51 75 51 76 0.96 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 CTCFL-221 - 299 2.7e-11 43.0 94.9 4 10 1.5e-08 2.7e-05 23.8 1.2 1 26 80 104 80 104 0.98 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 CTCFL-221 - 299 2.7e-11 43.0 94.9 5 10 2.7e-08 4.9e-05 23.0 6.0 1 26 108 132 108 132 0.98 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 CTCFL-221 - 299 2.7e-11 43.0 94.9 6 10 0.036 64 3.4 0.1 12 25 147 160 146 161 0.86 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 CTCFL-221 - 299 2.7e-11 43.0 94.9 7 10 0.00059 1.1 9.1 1.1 1 24 166 189 166 190 0.95 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 CTCFL-221 - 299 2.7e-11 43.0 94.9 8 10 8.3 1.5e+04 -4.1 7.6 2 24 197 218 196 220 0.62 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 CTCFL-221 - 299 2.7e-11 43.0 94.9 9 10 1.2e-07 0.00022 20.9 7.1 1 26 224 248 224 248 0.98 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 CTCFL-221 - 299 2.7e-11 43.0 94.9 10 10 5.1 9.2e+03 -3.5 3.8 1 6 284 289 284 289 0.91 C2H2-type zinc-finger domain # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/CTCFL-221.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/CTCFL-221.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/CTCFL-221.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/CTCFL-221.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/CTCFL-221.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:53:53 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 CTCFL-222 - 663 7.4e-43 143.1 100.0 1 11 0.43 1.1e+03 0.3 0.1 14 23 256 265 247 268 0.71 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 CTCFL-222 - 663 7.4e-43 143.1 100.0 2 11 1.1e-09 2.9e-06 27.5 5.9 2 25 272 295 271 296 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 CTCFL-222 - 663 7.4e-43 143.1 100.0 3 11 2.4e-08 6.2e-05 23.2 0.3 2 26 300 324 300 324 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 CTCFL-222 - 663 7.4e-43 143.1 100.0 4 11 1.5e-07 0.00038 20.8 4.1 2 24 328 351 327 352 0.90 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 CTCFL-222 - 663 7.4e-43 143.1 100.0 5 11 9.4e-09 2.4e-05 24.5 2.6 2 23 357 378 356 380 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 CTCFL-222 - 663 7.4e-43 143.1 100.0 6 11 6.6e-10 1.7e-06 28.2 5.2 2 25 385 408 384 409 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 CTCFL-222 - 663 7.4e-43 143.1 100.0 7 11 0.0024 6.2 7.4 1.3 5 21 416 434 413 435 0.79 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 CTCFL-222 - 663 7.4e-43 143.1 100.0 8 11 0.16 4e+02 1.7 0.3 5 24 446 467 445 468 0.73 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 CTCFL-222 - 663 7.4e-43 143.1 100.0 9 11 8.8e-07 0.0023 18.3 6.3 1 25 472 496 472 497 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 CTCFL-222 - 663 7.4e-43 143.1 100.0 10 11 1.3e-09 3.4e-06 27.2 3.9 2 25 501 524 500 525 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 CTCFL-222 - 663 7.4e-43 143.1 100.0 11 11 4.3e-06 0.011 16.1 0.8 2 25 529 556 529 557 0.84 Zinc-finger double domain zf-C2H2 PF00096.26 23 CTCFL-222 - 663 2.7e-30 103.1 111.4 1 11 0.002 5.2 7.7 5.4 1 23 257 279 257 279 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 CTCFL-222 - 663 2.7e-30 103.1 111.4 2 11 0.00014 0.35 11.4 4.6 3 23 287 307 285 307 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 CTCFL-222 - 663 2.7e-30 103.1 111.4 3 11 1.8e-08 4.6e-05 23.6 0.8 1 23 313 336 313 336 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 CTCFL-222 - 663 2.7e-30 103.1 111.4 4 11 4e-05 0.1 13.1 1.2 1 23 342 364 342 364 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 CTCFL-222 - 663 2.7e-30 103.1 111.4 5 11 1.5e-05 0.037 14.5 5.8 1 23 370 392 370 392 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 CTCFL-222 - 663 2.7e-30 103.1 111.4 6 11 9.2e-06 0.024 15.1 3.5 1 23 398 421 398 421 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 CTCFL-222 - 663 2.7e-30 103.1 111.4 7 11 9.3e-06 0.024 15.1 0.3 1 23 428 451 428 451 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 CTCFL-222 - 663 2.7e-30 103.1 111.4 8 11 3.1e-05 0.08 13.4 1.7 2 23 459 480 458 480 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 CTCFL-222 - 663 2.7e-30 103.1 111.4 9 11 4.2e-05 0.11 13.0 8.3 1 23 486 508 486 508 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 CTCFL-222 - 663 2.7e-30 103.1 111.4 10 11 1.7e-05 0.044 14.2 5.4 1 23 514 537 514 537 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 CTCFL-222 - 663 2.7e-30 103.1 111.4 11 11 2.5e-07 0.00064 20.0 1.0 1 19 546 564 546 567 0.96 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 CTCFL-222 - 663 1.2e-23 81.8 105.8 1 11 0.00014 0.37 11.8 3.7 1 23 257 279 257 280 0.88 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 CTCFL-222 - 663 1.2e-23 81.8 105.8 2 11 4.1e-05 0.1 13.5 3.3 2 23 286 307 285 308 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 CTCFL-222 - 663 1.2e-23 81.8 105.8 3 11 1.6e-05 0.04 14.7 0.5 1 24 313 336 313 336 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 CTCFL-222 - 663 1.2e-23 81.8 105.8 4 11 6.8e-05 0.17 12.8 1.3 1 23 342 364 342 365 0.90 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 CTCFL-222 - 663 1.2e-23 81.8 105.8 5 11 1.2e-05 0.03 15.2 4.3 1 23 370 392 370 393 0.84 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 CTCFL-222 - 663 1.2e-23 81.8 105.8 6 11 0.00012 0.3 12.0 2.7 1 24 398 421 398 421 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 CTCFL-222 - 663 1.2e-23 81.8 105.8 7 11 7.8e-05 0.2 12.6 0.2 1 24 428 451 428 451 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 CTCFL-222 - 663 1.2e-23 81.8 105.8 8 11 1.9e-06 0.0048 17.6 2.0 2 23 459 480 458 481 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 CTCFL-222 - 663 1.2e-23 81.8 105.8 9 11 0.0013 3.4 8.7 6.6 1 23 486 508 486 509 0.84 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 CTCFL-222 - 663 1.2e-23 81.8 105.8 10 11 0.00054 1.4 10.0 4.9 1 24 514 537 514 537 0.90 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 CTCFL-222 - 663 1.2e-23 81.8 105.8 11 11 0.00028 0.73 10.8 2.9 1 21 546 566 546 568 0.92 C2H2-type zinc finger zf-H2C2_5 PF13909.6 26 CTCFL-222 - 663 5.7e-09 35.6 29.4 1 11 0.00032 0.83 9.5 5.0 1 25 257 280 257 281 0.94 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 CTCFL-222 - 663 5.7e-09 35.6 29.4 2 11 0.075 1.9e+02 1.9 0.4 16 26 300 309 298 309 0.94 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 CTCFL-222 - 663 5.7e-09 35.6 29.4 3 11 0.0078 20 5.1 2.4 1 25 313 337 313 338 0.96 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 CTCFL-222 - 663 5.7e-09 35.6 29.4 4 11 2.8e-08 7.1e-05 22.5 1.2 1 26 342 366 342 366 0.98 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 CTCFL-222 - 663 5.7e-09 35.6 29.4 5 11 5e-08 0.00013 21.7 6.0 1 26 370 394 370 394 0.97 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 CTCFL-222 - 663 5.7e-09 35.6 29.4 6 11 0.062 1.6e+02 2.2 0.1 12 25 409 422 408 423 0.86 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 CTCFL-222 - 663 5.7e-09 35.6 29.4 7 11 0.00071 1.8 8.4 0.5 1 24 428 451 428 452 0.95 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 CTCFL-222 - 663 5.7e-09 35.6 29.4 8 11 5.3 1.4e+04 -4.0 6.1 2 24 459 480 458 482 0.61 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 CTCFL-222 - 663 5.7e-09 35.6 29.4 9 11 2.3e-07 0.00058 19.6 7.1 1 26 486 510 486 510 0.98 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 CTCFL-222 - 663 5.7e-09 35.6 29.4 10 11 7 1.8e+04 -4.7 3.8 1 6 546 551 546 551 0.91 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 CTCFL-222 - 663 5.7e-09 35.6 29.4 11 11 1.5 3.8e+03 -2.3 0.5 15 21 560 566 560 567 0.86 C2H2-type zinc-finger domain # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/CTCFL-222.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/CTCFL-222.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/CTCFL-222.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/CTCFL-222.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/CTCFL-222.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:53:54 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/DZIP1-201.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/DZIP1-201.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/DZIP1-201.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/DZIP1-201.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/DZIP1-201.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:53:54 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/DZIP1-202.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/DZIP1-202.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/DZIP1-202.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/DZIP1-202.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/DZIP1-202.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:53:55 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/DZIP1-203.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/DZIP1-203.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/DZIP1-203.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/DZIP1-203.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/DZIP1-203.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:53:55 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/DZIP1-204.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/DZIP1-204.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/DZIP1-204.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/DZIP1-204.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/DZIP1-204.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:53:55 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- Dzip-like_N PF13815.6 118 DZIP1-205 - 227 3.7e-45 152.7 0.6 1 1 9.1e-49 5.5e-45 152.2 0.6 1 118 58 178 58 178 0.99 Iguana/Dzip1-like DAZ-interacting protein N-terminal # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/DZIP1-205.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/DZIP1-205.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/DZIP1-205.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/DZIP1-205.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/DZIP1-205.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:53:56 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- Dzip-like_N PF13815.6 118 DZIP1-206 - 277 6e-45 152.0 0.6 1 1 5e-48 9e-45 151.5 0.6 1 118 104 224 104 224 0.99 Iguana/Dzip1-like DAZ-interacting protein N-terminal # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/DZIP1-206.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/DZIP1-206.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/DZIP1-206.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/DZIP1-206.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/DZIP1-206.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:53:56 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/DZIP1-207.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/DZIP1-207.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/DZIP1-207.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/DZIP1-207.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/DZIP1-207.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:53:56 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/DZIP1-208.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/DZIP1-208.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/DZIP1-208.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/DZIP1-208.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/DZIP1-208.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:53:57 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-C2H2 PF00096.26 23 E4F1-201 - 784 1e-35 120.2 68.0 1 10 0.019 18 6.0 0.1 1 20 58 77 58 79 0.93 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 E4F1-201 - 784 1e-35 120.2 68.0 2 10 2.5e-05 0.024 15.1 1.0 1 23 192 214 192 214 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 E4F1-201 - 784 1e-35 120.2 68.0 3 10 8.8e-07 0.00083 19.7 3.9 1 23 220 242 220 242 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 E4F1-201 - 784 1e-35 120.2 68.0 4 10 2.6e-07 0.00025 21.3 0.5 1 21 248 268 248 269 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 E4F1-201 - 784 1e-35 120.2 68.0 5 10 3e-06 0.0028 18.0 0.2 1 23 435 457 435 457 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 E4F1-201 - 784 1e-35 120.2 68.0 6 10 6.4e-07 0.00061 20.1 0.1 1 23 463 485 463 485 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 E4F1-201 - 784 1e-35 120.2 68.0 7 10 4.9e-05 0.046 14.2 0.9 1 23 491 513 491 513 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 E4F1-201 - 784 1e-35 120.2 68.0 8 10 1e-06 0.00097 19.5 1.3 1 23 519 541 519 541 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 E4F1-201 - 784 1e-35 120.2 68.0 9 10 0.00012 0.11 12.9 3.8 1 23 547 569 547 569 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 E4F1-201 - 784 1e-35 120.2 68.0 10 10 2.7e-05 0.026 15.0 0.8 1 22 575 596 575 596 0.97 Zinc finger, C2H2 type zf-H2C2_2 PF13465.6 26 E4F1-201 - 784 6.4e-35 118.0 76.5 1 11 0.0014 1.3 9.6 0.2 13 26 190 203 185 203 0.86 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 E4F1-201 - 784 6.4e-35 118.0 76.5 2 11 1.2e-05 0.012 16.1 0.9 2 25 207 230 207 231 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 E4F1-201 - 784 6.4e-35 118.0 76.5 3 11 5.9e-10 5.6e-07 29.7 3.4 2 24 235 257 234 258 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 E4F1-201 - 784 6.4e-35 118.0 76.5 4 11 6.9 6.5e+03 -2.1 0.1 1 7 262 268 262 269 0.85 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 E4F1-201 - 784 6.4e-35 118.0 76.5 5 11 0.042 40 4.9 0.4 12 24 432 444 430 446 0.86 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 E4F1-201 - 784 6.4e-35 118.0 76.5 6 11 1.5e-08 1.4e-05 25.3 0.3 2 24 450 472 449 474 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 E4F1-201 - 784 6.4e-35 118.0 76.5 7 11 0.001 0.95 10.0 1.2 2 26 478 502 478 502 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 E4F1-201 - 784 6.4e-35 118.0 76.5 8 11 1.1e-07 0.00011 22.5 3.3 3 26 507 530 505 530 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 E4F1-201 - 784 6.4e-35 118.0 76.5 9 11 1.1e-05 0.01 16.2 2.3 5 24 537 556 535 557 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 E4F1-201 - 784 6.4e-35 118.0 76.5 10 11 2e-10 1.9e-07 31.2 1.9 1 25 561 585 561 586 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 E4F1-201 - 784 6.4e-35 118.0 76.5 11 11 5.7 5.4e+03 -1.9 0.2 2 8 590 596 590 597 0.86 Zinc-finger double domain zf-C2H2_4 PF13894.6 24 E4F1-201 - 784 2.1e-29 99.6 66.5 1 10 0.092 87 4.4 0.2 1 20 58 77 58 80 0.89 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 E4F1-201 - 784 2.1e-29 99.6 66.5 2 10 4.9e-05 0.046 14.6 1.0 1 23 192 214 192 215 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 E4F1-201 - 784 2.1e-29 99.6 66.5 3 10 3.4e-06 0.0032 18.2 2.8 1 23 220 242 220 243 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 E4F1-201 - 784 2.1e-29 99.6 66.5 4 10 3.2e-06 0.003 18.3 0.4 1 22 248 269 248 270 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 E4F1-201 - 784 2.1e-29 99.6 66.5 5 10 2.2e-05 0.02 15.7 0.3 1 23 435 457 435 458 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 E4F1-201 - 784 2.1e-29 99.6 66.5 6 10 0.00032 0.31 12.0 0.2 1 23 463 485 463 486 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 E4F1-201 - 784 2.1e-29 99.6 66.5 7 10 0.00067 0.64 11.0 0.6 1 23 491 513 491 514 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 E4F1-201 - 784 2.1e-29 99.6 66.5 8 10 3e-06 0.0029 18.3 0.8 1 23 519 541 519 542 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 E4F1-201 - 784 2.1e-29 99.6 66.5 9 10 5.6e-05 0.053 14.4 3.4 1 23 547 569 547 570 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 E4F1-201 - 784 2.1e-29 99.6 66.5 10 10 4.4e-05 0.042 14.7 0.6 1 22 575 596 575 597 0.95 C2H2-type zinc finger zf-C2H2_jaz PF12171.8 27 E4F1-201 - 784 1.8e-16 60.0 18.6 1 9 6.6e-05 0.063 13.6 0.3 2 24 192 214 191 215 0.90 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 E4F1-201 - 784 1.8e-16 60.0 18.6 2 9 0.028 27 5.2 0.0 2 20 220 238 219 238 0.90 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 E4F1-201 - 784 1.8e-16 60.0 18.6 3 9 0.0056 5.3 7.5 0.0 2 23 248 269 247 270 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 E4F1-201 - 784 1.8e-16 60.0 18.6 4 9 0.00048 0.45 10.9 0.0 3 24 436 457 434 457 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 E4F1-201 - 784 1.8e-16 60.0 18.6 5 9 0.026 25 5.3 0.1 2 21 463 482 462 483 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 E4F1-201 - 784 1.8e-16 60.0 18.6 6 9 1.1 1.1e+03 0.1 0.0 2 21 491 510 490 511 0.85 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 E4F1-201 - 784 1.8e-16 60.0 18.6 7 9 0.011 11 6.5 0.6 3 24 520 541 518 547 0.85 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 E4F1-201 - 784 1.8e-16 60.0 18.6 8 9 0.0074 7 7.1 0.0 2 22 547 567 546 567 0.90 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 E4F1-201 - 784 1.8e-16 60.0 18.6 9 9 0.0037 3.5 8.0 0.0 2 24 575 597 574 598 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_6 PF13912.6 27 E4F1-201 - 784 3.8e-11 42.7 62.5 1 10 0.92 8.6e+02 0.1 0.2 1 12 57 68 57 80 0.79 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 E4F1-201 - 784 3.8e-11 42.7 62.5 2 10 2.3e-05 0.022 14.8 1.4 1 26 191 216 191 217 0.92 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 E4F1-201 - 784 3.8e-11 42.7 62.5 3 10 1.4e-05 0.013 15.5 2.0 2 24 220 242 219 245 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 E4F1-201 - 784 3.8e-11 42.7 62.5 4 10 0.00016 0.15 12.1 1.8 2 23 248 269 248 269 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 E4F1-201 - 784 3.8e-11 42.7 62.5 5 10 3.7e-06 0.0034 17.3 0.0 2 24 435 457 434 460 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 E4F1-201 - 784 3.8e-11 42.7 62.5 6 10 0.0091 8.6 6.5 0.4 2 20 463 481 463 485 0.82 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 E4F1-201 - 784 3.8e-11 42.7 62.5 7 10 0.0059 5.6 7.1 0.5 1 26 490 515 490 516 0.91 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 E4F1-201 - 784 3.8e-11 42.7 62.5 8 10 0.0083 7.8 6.6 0.4 2 16 519 533 519 544 0.83 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 E4F1-201 - 784 3.8e-11 42.7 62.5 9 10 0.3 2.8e+02 1.7 1.5 2 12 547 557 547 571 0.76 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 E4F1-201 - 784 3.8e-11 42.7 62.5 10 10 1.6 1.5e+03 -0.6 0.3 2 11 575 584 575 596 0.84 C2H2-type zinc finger # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/E4F1-201.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/E4F1-201.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/E4F1-201.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/E4F1-201.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/E4F1-201.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:53:57 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/E4F1-202.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/E4F1-202.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/E4F1-202.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/E4F1-202.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/E4F1-202.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:53:57 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/E4F1-203.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/E4F1-203.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/E4F1-203.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/E4F1-203.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/E4F1-203.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:53:58 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-C2H2 PF00096.26 23 E4F1-204 - 654 1.3e-36 123.0 68.0 1 10 0.018 15 6.3 0.1 1 20 58 77 58 79 0.93 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 E4F1-204 - 654 1.3e-36 123.0 68.0 2 10 2.4e-05 0.019 15.4 1.0 1 23 192 214 192 214 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 E4F1-204 - 654 1.3e-36 123.0 68.0 3 10 8.3e-07 0.00068 20.0 3.9 1 23 220 242 220 242 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 E4F1-204 - 654 1.3e-36 123.0 68.0 4 10 2.5e-07 0.0002 21.6 0.5 1 21 248 268 248 269 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 E4F1-204 - 654 1.3e-36 123.0 68.0 5 10 2.8e-06 0.0023 18.3 0.2 1 23 435 457 435 457 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 E4F1-204 - 654 1.3e-36 123.0 68.0 6 10 6e-07 0.00049 20.4 0.1 1 23 463 485 463 485 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 E4F1-204 - 654 1.3e-36 123.0 68.0 7 10 4.6e-05 0.038 14.5 0.9 1 23 491 513 491 513 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 E4F1-204 - 654 1.3e-36 123.0 68.0 8 10 9.6e-07 0.00078 19.8 1.3 1 23 519 541 519 541 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 E4F1-204 - 654 1.3e-36 123.0 68.0 9 10 0.00011 0.093 13.2 3.8 1 23 547 569 547 569 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 E4F1-204 - 654 1.3e-36 123.0 68.0 10 10 2.6e-05 0.021 15.3 0.8 1 22 575 596 575 596 0.97 Zinc finger, C2H2 type zf-H2C2_2 PF13465.6 26 E4F1-204 - 654 7.9e-36 120.9 76.5 1 11 0.0013 1 9.9 0.2 13 26 190 203 185 203 0.86 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 E4F1-204 - 654 7.9e-36 120.9 76.5 2 11 1.1e-05 0.0093 16.4 0.9 2 25 207 230 207 231 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 E4F1-204 - 654 7.9e-36 120.9 76.5 3 11 5.6e-10 4.5e-07 30.0 3.4 2 24 235 257 234 258 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 E4F1-204 - 654 7.9e-36 120.9 76.5 4 11 6.6 5.4e+03 -1.9 0.1 1 7 262 268 262 269 0.85 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 E4F1-204 - 654 7.9e-36 120.9 76.5 5 11 0.04 33 5.2 0.4 12 24 432 444 430 446 0.86 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 E4F1-204 - 654 7.9e-36 120.9 76.5 6 11 1.4e-08 1.1e-05 25.6 0.3 2 24 450 472 449 474 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 E4F1-204 - 654 7.9e-36 120.9 76.5 7 11 0.00095 0.77 10.3 1.2 2 26 478 502 478 502 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 E4F1-204 - 654 7.9e-36 120.9 76.5 8 11 1.1e-07 8.8e-05 22.8 3.3 3 26 507 530 505 530 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 E4F1-204 - 654 7.9e-36 120.9 76.5 9 11 1e-05 0.0084 16.5 2.3 5 24 537 556 535 557 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 E4F1-204 - 654 7.9e-36 120.9 76.5 10 11 1.9e-10 1.5e-07 31.5 1.9 1 25 561 585 561 586 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 E4F1-204 - 654 7.9e-36 120.9 76.5 11 11 5.5 4.4e+03 -1.6 0.2 2 8 590 596 590 597 0.86 Zinc-finger double domain zf-C2H2_4 PF13894.6 24 E4F1-204 - 654 2.7e-30 102.4 66.5 1 10 0.086 70 4.7 0.2 1 20 58 77 58 80 0.89 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 E4F1-204 - 654 2.7e-30 102.4 66.5 2 10 4.6e-05 0.037 14.9 1.0 1 23 192 214 192 215 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 E4F1-204 - 654 2.7e-30 102.4 66.5 3 10 3.2e-06 0.0026 18.5 2.8 1 23 220 242 220 243 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 E4F1-204 - 654 2.7e-30 102.4 66.5 4 10 3e-06 0.0024 18.5 0.4 1 22 248 269 248 270 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 E4F1-204 - 654 2.7e-30 102.4 66.5 5 10 2e-05 0.016 16.0 0.3 1 23 435 457 435 458 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 E4F1-204 - 654 2.7e-30 102.4 66.5 6 10 0.0003 0.25 12.3 0.2 1 23 463 485 463 486 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 E4F1-204 - 654 2.7e-30 102.4 66.5 7 10 0.00063 0.51 11.3 0.6 1 23 491 513 491 514 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 E4F1-204 - 654 2.7e-30 102.4 66.5 8 10 2.8e-06 0.0023 18.6 0.8 1 23 519 541 519 542 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 E4F1-204 - 654 2.7e-30 102.4 66.5 9 10 5.2e-05 0.043 14.7 3.4 1 23 547 569 547 570 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 E4F1-204 - 654 2.7e-30 102.4 66.5 10 10 4.2e-05 0.034 15.0 0.6 1 22 575 596 575 597 0.95 C2H2-type zinc finger zf-C2H2_jaz PF12171.8 27 E4F1-204 - 654 2.9e-17 62.5 18.6 1 9 6.2e-05 0.051 13.9 0.3 2 24 192 214 191 215 0.90 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 E4F1-204 - 654 2.9e-17 62.5 18.6 2 9 0.027 22 5.5 0.0 2 20 220 238 219 238 0.90 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 E4F1-204 - 654 2.9e-17 62.5 18.6 3 9 0.0053 4.3 7.7 0.0 2 23 248 269 247 270 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 E4F1-204 - 654 2.9e-17 62.5 18.6 4 9 0.00045 0.37 11.1 0.0 3 24 436 457 434 457 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 E4F1-204 - 654 2.9e-17 62.5 18.6 5 9 0.025 20 5.6 0.1 2 21 463 482 462 483 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 E4F1-204 - 654 2.9e-17 62.5 18.6 6 9 1.1 8.6e+02 0.4 0.0 2 21 491 510 490 511 0.85 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 E4F1-204 - 654 2.9e-17 62.5 18.6 7 9 0.011 8.8 6.8 0.6 3 24 520 541 518 547 0.85 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 E4F1-204 - 654 2.9e-17 62.5 18.6 8 9 0.0069 5.7 7.4 0.0 2 22 547 567 546 567 0.90 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 E4F1-204 - 654 2.9e-17 62.5 18.6 9 9 0.0035 2.8 8.3 0.0 2 24 575 597 574 598 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_6 PF13912.6 27 E4F1-204 - 654 5.7e-12 45.3 62.5 1 10 0.86 7e+02 0.4 0.2 1 12 57 68 57 80 0.79 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 E4F1-204 - 654 5.7e-12 45.3 62.5 2 10 2.2e-05 0.018 15.1 1.4 1 26 191 216 191 217 0.92 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 E4F1-204 - 654 5.7e-12 45.3 62.5 3 10 1.3e-05 0.011 15.7 2.0 2 24 220 242 219 245 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 E4F1-204 - 654 5.7e-12 45.3 62.5 4 10 0.00015 0.12 12.4 1.8 2 23 248 269 248 269 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 E4F1-204 - 654 5.7e-12 45.3 62.5 5 10 3.4e-06 0.0028 17.6 0.0 2 24 435 457 434 460 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 E4F1-204 - 654 5.7e-12 45.3 62.5 6 10 0.0086 7 6.8 0.4 2 20 463 481 463 485 0.82 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 E4F1-204 - 654 5.7e-12 45.3 62.5 7 10 0.0056 4.5 7.4 0.5 1 26 490 515 490 516 0.92 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 E4F1-204 - 654 5.7e-12 45.3 62.5 8 10 0.0078 6.4 6.9 0.4 2 16 519 533 519 544 0.83 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 E4F1-204 - 654 5.7e-12 45.3 62.5 9 10 0.28 2.3e+02 1.9 1.5 2 12 547 557 547 571 0.76 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 E4F1-204 - 654 5.7e-12 45.3 62.5 10 10 1.5 1.2e+03 -0.4 0.3 2 11 575 584 575 596 0.84 C2H2-type zinc finger # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/E4F1-204.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/E4F1-204.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/E4F1-204.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/E4F1-204.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/E4F1-204.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:53:58 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/E4F1-205.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/E4F1-205.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/E4F1-205.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/E4F1-205.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/E4F1-205.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:53:59 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 E4F1-206 - 607 4.6e-19 67.9 34.7 1 6 0.0011 0.96 10.0 0.2 13 26 190 203 185 203 0.86 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 E4F1-206 - 607 4.6e-19 67.9 34.7 2 6 9.5e-06 0.0085 16.5 0.9 2 25 207 230 207 231 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 E4F1-206 - 607 4.6e-19 67.9 34.7 3 6 4.6e-10 4.1e-07 30.1 3.4 2 24 235 257 234 258 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 E4F1-206 - 607 4.6e-19 67.9 34.7 4 6 5.5 5e+03 -1.7 0.1 1 7 262 268 262 269 0.85 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 E4F1-206 - 607 4.6e-19 67.9 34.7 5 6 1.6e-10 1.4e-07 31.6 1.9 1 25 384 408 384 409 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 E4F1-206 - 607 4.6e-19 67.9 34.7 6 6 4.6 4.1e+03 -1.5 0.2 2 8 413 419 413 420 0.86 Zinc-finger double domain zf-C2H2 PF00096.26 23 E4F1-206 - 607 3.6e-18 64.9 39.9 1 6 0.015 14 6.4 0.1 1 20 58 77 58 79 0.93 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 E4F1-206 - 607 3.6e-18 64.9 39.9 2 6 2e-05 0.018 15.5 1.0 1 23 192 214 192 214 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 E4F1-206 - 607 3.6e-18 64.9 39.9 3 6 6.9e-07 0.00062 20.1 3.9 1 23 220 242 220 242 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 E4F1-206 - 607 3.6e-18 64.9 39.9 4 6 2.1e-07 0.00018 21.7 0.5 1 21 248 268 248 269 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 E4F1-206 - 607 3.6e-18 64.9 39.9 5 6 0.0015 1.4 9.6 1.8 5 23 374 392 372 392 0.95 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 E4F1-206 - 607 3.6e-18 64.9 39.9 6 6 2.1e-05 0.019 15.4 0.8 1 22 398 419 398 419 0.97 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 E4F1-206 - 607 1e-16 60.2 36.8 1 6 0.072 64 4.8 0.2 1 20 58 77 58 80 0.89 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 E4F1-206 - 607 1e-16 60.2 36.8 2 6 3.8e-05 0.034 15.0 1.0 1 23 192 214 192 215 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 E4F1-206 - 607 1e-16 60.2 36.8 3 6 2.6e-06 0.0024 18.6 2.8 1 23 220 242 220 243 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 E4F1-206 - 607 1e-16 60.2 36.8 4 6 2.5e-06 0.0022 18.7 0.4 1 22 248 269 248 270 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 E4F1-206 - 607 1e-16 60.2 36.8 5 6 0.00093 0.83 10.7 0.7 5 23 374 392 373 393 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 E4F1-206 - 607 1e-16 60.2 36.8 6 6 3.5e-05 0.031 15.1 0.6 1 22 398 419 398 420 0.95 C2H2-type zinc finger zf-C2H2_jaz PF12171.8 27 E4F1-206 - 607 1e-09 38.4 6.9 1 5 5.2e-05 0.047 14.0 0.3 2 24 192 214 191 215 0.90 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 E4F1-206 - 607 1e-09 38.4 6.9 2 5 0.022 20 5.6 0.0 2 20 220 238 219 238 0.90 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 E4F1-206 - 607 1e-09 38.4 6.9 3 5 0.0044 3.9 7.9 0.0 2 23 248 269 247 270 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 E4F1-206 - 607 1e-09 38.4 6.9 4 5 0.44 3.9e+02 1.5 0.0 5 22 373 390 373 390 0.90 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 E4F1-206 - 607 1e-09 38.4 6.9 5 5 0.0029 2.6 8.4 0.0 2 24 398 420 397 421 0.94 Zinc-finger double-stranded RNA-binding # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/E4F1-206.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/E4F1-206.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/E4F1-206.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/E4F1-206.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/E4F1-206.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:53:59 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/E4F1-207.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/E4F1-207.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/E4F1-207.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/E4F1-207.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/E4F1-207.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:53:59 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/E4F1-208.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/E4F1-208.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/E4F1-208.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/E4F1-208.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/E4F1-208.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:54:00 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-C2H2 PF00096.26 23 E4F1-209 - 247 3.8e-14 52.3 18.6 1 3 1.1e-05 0.0058 17.0 1.0 1 23 58 80 58 80 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 E4F1-209 - 247 3.8e-14 52.3 18.6 2 3 3.9e-07 0.0002 21.6 3.9 1 23 86 108 86 108 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 E4F1-209 - 247 3.8e-14 52.3 18.6 3 3 1.2e-07 6.1e-05 23.3 0.5 1 21 114 134 114 135 0.96 Zinc finger, C2H2 type zf-H2C2_2 PF13465.6 26 E4F1-209 - 247 5.4e-14 51.9 19.5 1 4 0.00064 0.33 11.5 0.2 13 26 56 69 51 69 0.86 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 E4F1-209 - 247 5.4e-14 51.9 19.5 2 4 5.4e-06 0.0028 18.0 0.9 2 25 73 96 73 97 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 E4F1-209 - 247 5.4e-14 51.9 19.5 3 4 2.6e-10 1.3e-07 31.7 3.4 2 24 101 123 100 124 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 E4F1-209 - 247 5.4e-14 51.9 19.5 4 4 3.2 1.6e+03 -0.2 0.1 1 7 128 134 128 137 0.86 Zinc-finger double domain zf-C2H2_4 PF13894.6 24 E4F1-209 - 247 9.7e-13 47.8 17.1 1 3 2.1e-05 0.011 16.5 1.0 1 23 58 80 58 81 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 E4F1-209 - 247 9.7e-13 47.8 17.1 2 3 1.5e-06 0.00075 20.1 2.8 1 23 86 108 86 109 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 E4F1-209 - 247 9.7e-13 47.8 17.1 3 3 1.4e-06 0.00072 20.2 0.4 1 22 114 135 114 136 0.95 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 E4F1-209 - 247 1.5e-09 37.6 19.6 1 3 1e-05 0.0053 16.7 1.4 1 26 57 82 57 83 0.92 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 E4F1-209 - 247 1.5e-09 37.6 19.6 2 3 6.3e-06 0.0032 17.4 2.0 2 24 86 108 85 111 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 E4F1-209 - 247 1.5e-09 37.6 19.6 3 3 7.2e-05 0.037 14.0 1.8 2 23 114 135 114 135 0.94 C2H2-type zinc finger zf-C2H2_jaz PF12171.8 27 E4F1-209 - 247 5.6e-08 32.9 3.2 1 3 3e-05 0.015 15.5 0.3 2 24 58 80 57 81 0.90 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 E4F1-209 - 247 5.6e-08 32.9 3.2 2 3 0.013 6.9 7.1 0.0 2 20 86 104 85 104 0.90 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 E4F1-209 - 247 5.6e-08 32.9 3.2 3 3 0.0025 1.3 9.4 0.0 2 23 114 135 113 136 0.93 Zinc-finger double-stranded RNA-binding # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/E4F1-209.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/E4F1-209.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/E4F1-209.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/E4F1-209.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/E4F1-209.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:54:00 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- DUF3446 PF11928.8 88 EGR2-201 - 476 1.5e-24 86.1 6.5 1 4 1.2e-27 1.5e-24 86.1 6.5 1 88 94 184 94 184 0.94 Early growth response N-terminal domain DUF3446 PF11928.8 88 EGR2-201 - 476 1.5e-24 86.1 6.5 2 4 0.81 1e+03 0.1 3.0 63 82 193 212 185 229 0.68 Early growth response N-terminal domain DUF3446 PF11928.8 88 EGR2-201 - 476 1.5e-24 86.1 6.5 3 4 0.48 6.2e+02 0.8 0.1 34 52 292 310 265 329 0.62 Early growth response N-terminal domain DUF3446 PF11928.8 88 EGR2-201 - 476 1.5e-24 86.1 6.5 4 4 8.1 1e+04 -3.1 6.4 40 52 432 444 422 473 0.46 Early growth response N-terminal domain zf-C2H2 PF00096.26 23 EGR2-201 - 476 2.9e-16 58.9 16.7 1 3 2.5e-09 3.2e-06 27.3 0.1 1 23 340 364 340 364 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 EGR2-201 - 476 2.9e-16 58.9 16.7 2 3 5.6e-07 0.00072 19.9 4.1 1 23 370 392 370 392 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 EGR2-201 - 476 2.9e-16 58.9 16.7 3 3 9.6e-07 0.0012 19.1 1.1 1 23 398 420 398 420 0.96 Zinc finger, C2H2 type zf-H2C2_2 PF13465.6 26 EGR2-201 - 476 4.6e-14 52.1 27.3 1 5 1 1.3e+03 0.1 0.1 13 19 247 253 241 253 0.86 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 EGR2-201 - 476 4.6e-14 52.1 27.3 2 5 0.017 22 5.7 0.2 12 25 337 352 333 353 0.88 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 EGR2-201 - 476 4.6e-14 52.1 27.3 3 5 1.5e-09 1.9e-06 28.0 1.0 2 25 357 380 356 381 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 EGR2-201 - 476 4.6e-14 52.1 27.3 4 5 2.1e-11 2.7e-08 33.8 1.6 1 25 384 408 384 409 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 EGR2-201 - 476 4.6e-14 52.1 27.3 5 5 1.5 2e+03 -0.5 1.6 3 13 414 424 413 428 0.83 Zinc-finger double domain zf-C2H2_4 PF13894.6 24 EGR2-201 - 476 5.6e-11 42.3 12.8 1 3 2.3e-05 0.03 15.1 0.1 1 23 340 364 340 365 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 EGR2-201 - 476 5.6e-11 42.3 12.8 2 3 1.9e-06 0.0024 18.6 2.1 1 23 370 392 370 393 0.97 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 EGR2-201 - 476 5.6e-11 42.3 12.8 3 3 4.1e-05 0.053 14.4 0.6 1 23 398 420 398 421 0.93 C2H2-type zinc finger # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/EGR2-201.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/EGR2-201.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/EGR2-201.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/EGR2-201.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/EGR2-201.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:54:00 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- DUF3446 PF11928.8 88 EGR2-202 - 426 1.2e-24 86.4 6.5 1 4 1e-27 1.2e-24 86.4 6.5 1 88 44 134 44 134 0.94 Early growth response N-terminal domain DUF3446 PF11928.8 88 EGR2-202 - 426 1.2e-24 86.4 6.5 2 4 0.75 9e+02 0.3 3.0 63 82 143 162 135 179 0.68 Early growth response N-terminal domain DUF3446 PF11928.8 88 EGR2-202 - 426 1.2e-24 86.4 6.5 3 4 0.47 5.6e+02 0.9 0.2 34 52 242 260 215 281 0.63 Early growth response N-terminal domain DUF3446 PF11928.8 88 EGR2-202 - 426 1.2e-24 86.4 6.5 4 4 5.4 6.5e+03 -2.5 6.0 40 52 382 394 372 424 0.46 Early growth response N-terminal domain zf-C2H2 PF00096.26 23 EGR2-202 - 426 1.9e-16 59.5 16.7 1 3 2.3e-09 2.8e-06 27.5 0.1 1 23 290 314 290 314 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 EGR2-202 - 426 1.9e-16 59.5 16.7 2 3 5.2e-07 0.00063 20.1 4.1 1 23 320 342 320 342 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 EGR2-202 - 426 1.9e-16 59.5 16.7 3 3 9e-07 0.0011 19.3 1.1 1 23 348 370 348 370 0.96 Zinc finger, C2H2 type zf-H2C2_2 PF13465.6 26 EGR2-202 - 426 2.5e-14 53.0 27.3 1 5 0.99 1.2e+03 0.2 0.1 13 19 197 203 191 203 0.86 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 EGR2-202 - 426 2.5e-14 53.0 27.3 2 5 0.016 20 5.9 0.2 12 25 287 302 283 303 0.88 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 EGR2-202 - 426 2.5e-14 53.0 27.3 3 5 1.4e-09 1.7e-06 28.2 1.0 2 25 307 330 306 331 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 EGR2-202 - 426 2.5e-14 53.0 27.3 4 5 2e-11 2.4e-08 34.0 1.6 1 25 334 358 334 359 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 EGR2-202 - 426 2.5e-14 53.0 27.3 5 5 1.5 1.7e+03 -0.3 1.6 3 13 364 374 363 378 0.83 Zinc-finger double domain zf-C2H2_4 PF13894.6 24 EGR2-202 - 426 3.6e-11 42.9 12.8 1 3 2.2e-05 0.026 15.3 0.1 1 23 290 314 290 315 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 EGR2-202 - 426 3.6e-11 42.9 12.8 2 3 1.7e-06 0.0021 18.8 2.1 1 23 320 342 320 343 0.97 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 EGR2-202 - 426 3.6e-11 42.9 12.8 3 3 3.8e-05 0.046 14.6 0.6 1 23 348 370 348 371 0.93 C2H2-type zinc finger # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/EGR2-202.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/EGR2-202.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/EGR2-202.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/EGR2-202.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/EGR2-202.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:54:01 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- DUF3446 PF11928.8 88 EGR2-203 - 476 1.5e-24 86.1 6.5 1 4 1.2e-27 1.5e-24 86.1 6.5 1 88 94 184 94 184 0.94 Early growth response N-terminal domain DUF3446 PF11928.8 88 EGR2-203 - 476 1.5e-24 86.1 6.5 2 4 0.81 1e+03 0.1 3.0 63 82 193 212 185 229 0.68 Early growth response N-terminal domain DUF3446 PF11928.8 88 EGR2-203 - 476 1.5e-24 86.1 6.5 3 4 0.48 6.2e+02 0.8 0.1 34 52 292 310 265 329 0.62 Early growth response N-terminal domain DUF3446 PF11928.8 88 EGR2-203 - 476 1.5e-24 86.1 6.5 4 4 8.1 1e+04 -3.1 6.4 40 52 432 444 422 473 0.46 Early growth response N-terminal domain zf-C2H2 PF00096.26 23 EGR2-203 - 476 2.9e-16 58.9 16.7 1 3 2.5e-09 3.2e-06 27.3 0.1 1 23 340 364 340 364 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 EGR2-203 - 476 2.9e-16 58.9 16.7 2 3 5.6e-07 0.00072 19.9 4.1 1 23 370 392 370 392 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 EGR2-203 - 476 2.9e-16 58.9 16.7 3 3 9.6e-07 0.0012 19.1 1.1 1 23 398 420 398 420 0.96 Zinc finger, C2H2 type zf-H2C2_2 PF13465.6 26 EGR2-203 - 476 4.6e-14 52.1 27.3 1 5 1 1.3e+03 0.1 0.1 13 19 247 253 241 253 0.86 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 EGR2-203 - 476 4.6e-14 52.1 27.3 2 5 0.017 22 5.7 0.2 12 25 337 352 333 353 0.88 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 EGR2-203 - 476 4.6e-14 52.1 27.3 3 5 1.5e-09 1.9e-06 28.0 1.0 2 25 357 380 356 381 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 EGR2-203 - 476 4.6e-14 52.1 27.3 4 5 2.1e-11 2.7e-08 33.8 1.6 1 25 384 408 384 409 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 EGR2-203 - 476 4.6e-14 52.1 27.3 5 5 1.5 2e+03 -0.5 1.6 3 13 414 424 413 428 0.83 Zinc-finger double domain zf-C2H2_4 PF13894.6 24 EGR2-203 - 476 5.6e-11 42.3 12.8 1 3 2.3e-05 0.03 15.1 0.1 1 23 340 364 340 365 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 EGR2-203 - 476 5.6e-11 42.3 12.8 2 3 1.9e-06 0.0024 18.6 2.1 1 23 370 392 370 393 0.97 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 EGR2-203 - 476 5.6e-11 42.3 12.8 3 3 4.1e-05 0.053 14.4 0.6 1 23 398 420 398 421 0.93 C2H2-type zinc finger # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/EGR2-203.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/EGR2-203.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/EGR2-203.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/EGR2-203.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/EGR2-203.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:54:01 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/EGR2-204.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/EGR2-204.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/EGR2-204.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/EGR2-204.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/EGR2-204.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:54:01 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/EGR2-205.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/EGR2-205.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/EGR2-205.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/EGR2-205.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/EGR2-205.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:54:02 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/EGR2-206.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/EGR2-206.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/EGR2-206.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/EGR2-206.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/EGR2-206.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:54:02 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 EGR3-201 - 387 4.5e-15 55.3 22.4 1 4 0.033 45 4.7 0.1 12 25 272 287 268 288 0.88 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 EGR3-201 - 387 4.5e-15 55.3 22.4 2 4 1.2e-09 1.7e-06 28.2 1.3 2 25 292 315 291 316 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 EGR3-201 - 387 4.5e-15 55.3 22.4 3 4 1.5e-11 2e-08 34.3 1.9 1 25 319 343 319 344 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 EGR3-201 - 387 4.5e-15 55.3 22.4 4 4 0.98 1.4e+03 0.0 1.4 3 13 349 359 348 362 0.86 Zinc-finger double domain zf-C2H2 PF00096.26 23 EGR3-201 - 387 8.1e-15 54.4 17.9 1 3 2.8e-08 3.9e-05 23.9 0.5 2 23 276 299 275 299 0.95 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 EGR3-201 - 387 8.1e-15 54.4 17.9 2 3 8.1e-08 0.00011 22.4 4.2 1 23 305 327 305 327 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 EGR3-201 - 387 8.1e-15 54.4 17.9 3 3 5.5e-06 0.0076 16.6 0.6 1 23 333 355 333 355 0.96 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 EGR3-201 - 387 1.4e-10 41.0 15.1 1 3 3.9e-05 0.054 14.4 0.4 2 23 276 299 275 300 0.90 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 EGR3-201 - 387 1.4e-10 41.0 15.1 2 3 8.8e-07 0.0012 19.5 2.4 1 23 305 327 305 328 0.97 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 EGR3-201 - 387 1.4e-10 41.0 15.1 3 3 2.5e-05 0.035 14.9 0.5 1 23 333 355 333 356 0.93 C2H2-type zinc finger DUF3446 PF11928.8 88 EGR3-201 - 387 6e-10 39.3 3.5 1 2 4.4e-13 6e-10 39.3 3.5 1 88 87 156 87 156 0.76 Early growth response N-terminal domain DUF3446 PF11928.8 88 EGR3-201 - 387 6e-10 39.3 3.5 2 2 8.7 1.2e+04 -3.3 0.4 49 55 370 376 365 385 0.46 Early growth response N-terminal domain # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/EGR3-201.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/EGR3-201.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/EGR3-201.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/EGR3-201.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/EGR3-201.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:54:02 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/EGR3-202.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/EGR3-202.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/EGR3-202.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/EGR3-202.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/EGR3-202.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:54:03 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 EGR3-203 - 349 2.7e-15 56.0 22.4 1 4 0.029 40 4.9 0.1 12 25 234 249 230 250 0.88 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 EGR3-203 - 349 2.7e-15 56.0 22.4 2 4 1.1e-09 1.5e-06 28.4 1.3 2 25 254 277 253 278 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 EGR3-203 - 349 2.7e-15 56.0 22.4 3 4 1.3e-11 1.8e-08 34.5 1.9 1 25 281 305 281 306 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 EGR3-203 - 349 2.7e-15 56.0 22.4 4 4 0.87 1.2e+03 0.2 1.4 3 13 311 321 310 324 0.86 Zinc-finger double domain zf-C2H2 PF00096.26 23 EGR3-203 - 349 5.6e-15 54.9 17.9 1 3 2.5e-08 3.4e-05 24.0 0.5 2 23 238 261 237 261 0.95 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 EGR3-203 - 349 5.6e-15 54.9 17.9 2 3 7.1e-08 9.8e-05 22.6 4.2 1 23 267 289 267 289 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 EGR3-203 - 349 5.6e-15 54.9 17.9 3 3 4.9e-06 0.0067 16.8 0.6 1 23 295 317 295 317 0.96 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 EGR3-203 - 349 9.6e-11 41.6 15.1 1 3 3.4e-05 0.047 14.5 0.4 2 23 238 261 237 262 0.90 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 EGR3-203 - 349 9.6e-11 41.6 15.1 2 3 7.7e-07 0.0011 19.7 2.4 1 23 267 289 267 290 0.97 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 EGR3-203 - 349 9.6e-11 41.6 15.1 3 3 2.2e-05 0.031 15.1 0.5 1 23 295 317 295 318 0.93 C2H2-type zinc finger DUF3446 PF11928.8 88 EGR3-203 - 349 5.5e-10 39.4 3.6 1 2 4e-13 5.5e-10 39.4 3.6 1 88 49 118 49 118 0.76 Early growth response N-terminal domain DUF3446 PF11928.8 88 EGR3-203 - 349 5.5e-10 39.4 3.6 2 2 6.9 9.5e+03 -3.0 0.3 49 55 332 338 326 347 0.47 Early growth response N-terminal domain # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/EGR3-203.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/EGR3-203.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/EGR3-203.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/EGR3-203.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/EGR3-203.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:54:03 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 EGR3-204 - 349 2.7e-15 56.0 22.4 1 4 0.029 40 4.9 0.1 12 25 234 249 230 250 0.88 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 EGR3-204 - 349 2.7e-15 56.0 22.4 2 4 1.1e-09 1.5e-06 28.4 1.3 2 25 254 277 253 278 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 EGR3-204 - 349 2.7e-15 56.0 22.4 3 4 1.3e-11 1.8e-08 34.5 1.9 1 25 281 305 281 306 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 EGR3-204 - 349 2.7e-15 56.0 22.4 4 4 0.87 1.2e+03 0.2 1.4 3 13 311 321 310 324 0.86 Zinc-finger double domain zf-C2H2 PF00096.26 23 EGR3-204 - 349 5.6e-15 54.9 17.9 1 3 2.5e-08 3.4e-05 24.0 0.5 2 23 238 261 237 261 0.95 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 EGR3-204 - 349 5.6e-15 54.9 17.9 2 3 7.1e-08 9.8e-05 22.6 4.2 1 23 267 289 267 289 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 EGR3-204 - 349 5.6e-15 54.9 17.9 3 3 4.9e-06 0.0067 16.8 0.6 1 23 295 317 295 317 0.96 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 EGR3-204 - 349 9.6e-11 41.6 15.1 1 3 3.4e-05 0.047 14.5 0.4 2 23 238 261 237 262 0.90 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 EGR3-204 - 349 9.6e-11 41.6 15.1 2 3 7.7e-07 0.0011 19.7 2.4 1 23 267 289 267 290 0.97 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 EGR3-204 - 349 9.6e-11 41.6 15.1 3 3 2.2e-05 0.031 15.1 0.5 1 23 295 317 295 318 0.93 C2H2-type zinc finger DUF3446 PF11928.8 88 EGR3-204 - 349 5.5e-10 39.4 3.6 1 2 4e-13 5.5e-10 39.4 3.6 1 88 49 118 49 118 0.76 Early growth response N-terminal domain DUF3446 PF11928.8 88 EGR3-204 - 349 5.5e-10 39.4 3.6 2 2 6.9 9.5e+03 -3.0 0.3 49 55 332 338 326 347 0.47 Early growth response N-terminal domain # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/EGR3-204.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/EGR3-204.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/EGR3-204.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/EGR3-204.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/EGR3-204.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:54:03 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 EGR3-205 - 333 2.1e-15 56.3 22.4 1 4 0.029 38 5.0 0.1 12 25 218 233 214 234 0.88 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 EGR3-205 - 333 2.1e-15 56.3 22.4 2 4 1.1e-09 1.4e-06 28.5 1.3 2 25 238 261 237 262 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 EGR3-205 - 333 2.1e-15 56.3 22.4 3 4 1.3e-11 1.7e-08 34.5 1.9 1 25 265 289 265 290 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 EGR3-205 - 333 2.1e-15 56.3 22.4 4 4 0.89 1.1e+03 0.3 1.4 3 13 295 305 294 308 0.86 Zinc-finger double domain zf-C2H2 PF00096.26 23 EGR3-205 - 333 4.6e-15 55.1 17.9 1 3 2.5e-08 3.2e-05 24.1 0.5 2 23 222 245 221 245 0.95 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 EGR3-205 - 333 4.6e-15 55.1 17.9 2 3 7.2e-08 9.3e-05 22.7 4.2 1 23 251 273 251 273 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 EGR3-205 - 333 4.6e-15 55.1 17.9 3 3 4.9e-06 0.0063 16.9 0.6 1 23 279 301 279 301 0.96 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 EGR3-205 - 333 8e-11 41.8 15.1 1 3 3.5e-05 0.044 14.6 0.4 2 23 222 245 221 246 0.90 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 EGR3-205 - 333 8e-11 41.8 15.1 2 3 7.8e-07 0.001 19.7 2.4 1 23 251 273 251 274 0.97 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 EGR3-205 - 333 8e-11 41.8 15.1 3 3 2.3e-05 0.029 15.2 0.5 1 23 279 301 279 302 0.93 C2H2-type zinc finger DUF3446 PF11928.8 88 EGR3-205 - 333 4.1e-10 39.8 3.3 1 2 3.2e-13 4.1e-10 39.8 3.3 1 88 33 102 33 102 0.76 Early growth response N-terminal domain DUF3446 PF11928.8 88 EGR3-205 - 333 4.1e-10 39.8 3.3 2 2 7 9e+03 -2.9 0.3 49 55 316 322 310 331 0.47 Early growth response N-terminal domain # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/EGR3-205.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/EGR3-205.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/EGR3-205.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/EGR3-205.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/EGR3-205.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:54:04 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/FEZF1-201.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/FEZF1-201.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/FEZF1-201.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/FEZF1-201.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/FEZF1-201.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:54:04 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 FEZF1-202 - 425 8e-29 98.8 51.5 1 7 0.0012 0.9 10.1 0.5 12 25 207 220 203 221 0.85 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 FEZF1-202 - 425 8e-29 98.8 51.5 2 7 7.8e-09 5.8e-06 26.5 0.2 1 25 224 248 224 249 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 FEZF1-202 - 425 8e-29 98.8 51.5 3 7 2.1e-08 1.6e-05 25.1 4.1 4 25 255 276 253 277 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 FEZF1-202 - 425 8e-29 98.8 51.5 4 7 2.1e-07 0.00016 22.0 1.2 2 24 281 303 280 305 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 FEZF1-202 - 425 8e-29 98.8 51.5 5 7 5.1e-07 0.00038 20.7 3.2 1 24 308 331 308 333 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 FEZF1-202 - 425 8e-29 98.8 51.5 6 7 1.6e-07 0.00012 22.3 3.1 1 24 336 359 336 359 0.97 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 FEZF1-202 - 425 8e-29 98.8 51.5 7 7 0.87 6.5e+02 1.1 0.2 1 9 364 373 364 376 0.85 Zinc-finger double domain zf-C2H2 PF00096.26 23 FEZF1-202 - 425 8.4e-28 95.3 54.0 1 6 3.5e-08 2.6e-05 24.4 0.9 1 20 210 229 210 232 0.94 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 FEZF1-202 - 425 8.4e-28 95.3 54.0 2 6 2.5e-07 0.00019 21.7 1.3 1 23 238 260 238 260 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 FEZF1-202 - 425 8.4e-28 95.3 54.0 3 6 4.5e-08 3.4e-05 24.1 2.9 1 23 266 288 266 288 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 FEZF1-202 - 425 8.4e-28 95.3 54.0 4 6 9.5e-06 0.0071 16.7 2.5 1 23 294 316 294 316 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 FEZF1-202 - 425 8.4e-28 95.3 54.0 5 6 0.00012 0.091 13.3 5.6 1 23 322 344 322 344 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 FEZF1-202 - 425 8.4e-28 95.3 54.0 6 6 3.8e-08 2.8e-05 24.3 3.3 1 23 350 373 350 373 0.98 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 FEZF1-202 - 425 1.6e-19 68.9 48.2 1 6 1.1e-05 0.0083 16.9 0.8 1 23 210 232 210 233 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 FEZF1-202 - 425 1.6e-19 68.9 48.2 2 6 3.6e-05 0.027 15.3 1.4 1 23 238 260 238 261 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 FEZF1-202 - 425 1.6e-19 68.9 48.2 3 6 2.6e-05 0.02 15.7 1.1 1 23 266 288 266 289 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 FEZF1-202 - 425 1.6e-19 68.9 48.2 4 6 1.1e-05 0.0083 16.9 2.1 1 23 294 316 294 317 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 FEZF1-202 - 425 1.6e-19 68.9 48.2 5 6 6.4e-05 0.048 14.5 3.8 1 23 322 344 322 345 0.97 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 FEZF1-202 - 425 1.6e-19 68.9 48.2 6 6 7.1e-06 0.0053 17.5 2.8 1 24 350 373 350 373 0.97 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 FEZF1-202 - 425 1.6e-07 31.1 43.5 1 6 3.6e-05 0.027 14.5 0.4 1 21 209 229 209 232 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 FEZF1-202 - 425 1.6e-07 31.1 43.5 2 6 0.0035 2.6 8.1 1.0 2 12 238 248 238 262 0.87 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 FEZF1-202 - 425 1.6e-07 31.1 43.5 3 6 6.7e-05 0.05 13.6 1.4 2 24 266 288 266 289 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 FEZF1-202 - 425 1.6e-07 31.1 43.5 4 6 1.2 9.2e+02 0.0 1.6 2 12 294 304 294 305 0.91 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 FEZF1-202 - 425 1.6e-07 31.1 43.5 5 6 6.2e-06 0.0047 16.9 3.0 2 26 322 346 321 347 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 FEZF1-202 - 425 1.6e-07 31.1 43.5 6 6 0.088 66 3.7 1.4 2 11 350 359 350 370 0.93 C2H2-type zinc finger # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/FEZF1-202.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/FEZF1-202.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/FEZF1-202.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/FEZF1-202.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/FEZF1-202.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:54:05 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 FEZF1-203 - 475 1.7e-28 97.7 51.5 1 7 0.0013 1 9.9 0.5 12 25 257 270 253 271 0.85 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 FEZF1-203 - 475 1.7e-28 97.7 51.5 2 7 8.6e-09 6.7e-06 26.3 0.2 1 25 274 298 274 299 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 FEZF1-203 - 475 1.7e-28 97.7 51.5 3 7 2.3e-08 1.8e-05 24.9 4.1 4 25 305 326 303 327 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 FEZF1-203 - 475 1.7e-28 97.7 51.5 4 7 2.3e-07 0.00018 21.8 1.2 2 24 331 353 330 355 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 FEZF1-203 - 475 1.7e-28 97.7 51.5 5 7 5.6e-07 0.00044 20.6 3.2 1 24 358 381 358 383 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 FEZF1-203 - 475 1.7e-28 97.7 51.5 6 7 1.8e-07 0.00014 22.1 3.1 1 24 386 409 386 409 0.97 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 FEZF1-203 - 475 1.7e-28 97.7 51.5 7 7 0.94 7.3e+02 0.9 0.2 1 9 414 423 414 426 0.85 Zinc-finger double domain zf-C2H2 PF00096.26 23 FEZF1-203 - 475 1.8e-27 94.2 54.0 1 6 3.8e-08 3e-05 24.2 0.9 1 20 260 279 260 282 0.94 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 FEZF1-203 - 475 1.8e-27 94.2 54.0 2 6 2.7e-07 0.00021 21.5 1.3 1 23 288 310 288 310 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 FEZF1-203 - 475 1.8e-27 94.2 54.0 3 6 4.9e-08 3.8e-05 23.9 2.9 1 23 316 338 316 338 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 FEZF1-203 - 475 1.8e-27 94.2 54.0 4 6 1e-05 0.0082 16.6 2.5 1 23 344 366 344 366 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 FEZF1-203 - 475 1.8e-27 94.2 54.0 5 6 0.00013 0.1 13.1 5.6 1 23 372 394 372 394 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 FEZF1-203 - 475 1.8e-27 94.2 54.0 6 6 4.2e-08 3.2e-05 24.1 3.3 1 23 400 423 400 423 0.98 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 FEZF1-203 - 475 3.4e-19 67.9 48.2 1 6 1.2e-05 0.0095 16.7 0.8 1 23 260 282 260 283 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 FEZF1-203 - 475 3.4e-19 67.9 48.2 2 6 4e-05 0.031 15.1 1.4 1 23 288 310 288 311 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 FEZF1-203 - 475 3.4e-19 67.9 48.2 3 6 2.9e-05 0.023 15.5 1.1 1 23 316 338 316 339 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 FEZF1-203 - 475 3.4e-19 67.9 48.2 4 6 1.2e-05 0.0095 16.7 2.1 1 23 344 366 344 367 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 FEZF1-203 - 475 3.4e-19 67.9 48.2 5 6 7e-05 0.055 14.3 3.8 1 23 372 394 372 395 0.97 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 FEZF1-203 - 475 3.4e-19 67.9 48.2 6 6 7.9e-06 0.0061 17.3 2.8 1 24 400 423 400 423 0.97 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 FEZF1-203 - 475 3.4e-07 30.1 43.5 1 6 4e-05 0.031 14.3 0.4 1 21 259 279 259 282 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 FEZF1-203 - 475 3.4e-07 30.1 43.5 2 6 0.0038 3 8.0 1.0 2 12 288 298 288 312 0.87 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 FEZF1-203 - 475 3.4e-07 30.1 43.5 3 6 7.3e-05 0.057 13.4 1.4 2 24 316 338 316 339 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 FEZF1-203 - 475 3.4e-07 30.1 43.5 4 6 1.3 1e+03 -0.1 1.6 2 12 344 354 344 355 0.91 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 FEZF1-203 - 475 3.4e-07 30.1 43.5 5 6 6.8e-06 0.0053 16.7 3.0 2 26 372 396 371 397 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 FEZF1-203 - 475 3.4e-07 30.1 43.5 6 6 0.096 75 3.5 1.4 2 11 400 409 400 420 0.93 C2H2-type zinc finger # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/FEZF1-203.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/FEZF1-203.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/FEZF1-203.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/FEZF1-203.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/FEZF1-203.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:54:05 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-C2H2 PF00096.26 23 GFI1-201 - 422 2.1e-28 97.2 42.9 1 6 1.6e-06 0.00094 19.5 1.5 1 23 255 278 255 278 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 GFI1-201 - 422 2.1e-28 97.2 42.9 2 6 1.2e-05 0.0069 16.8 0.2 1 23 284 306 284 306 0.95 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 GFI1-201 - 422 2.1e-28 97.2 42.9 3 6 1.7e-08 1e-05 25.7 1.0 1 23 312 334 312 334 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 GFI1-201 - 422 2.1e-28 97.2 42.9 4 6 4.3e-06 0.0026 18.1 4.4 1 23 340 362 340 362 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 GFI1-201 - 422 2.1e-28 97.2 42.9 5 6 4.4e-08 2.6e-05 24.4 2.2 1 23 368 390 368 390 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 GFI1-201 - 422 2.1e-28 97.2 42.9 6 6 6.9e-06 0.0041 17.5 0.5 3 23 398 419 396 419 0.96 Zinc finger, C2H2 type zf-H2C2_2 PF13465.6 26 GFI1-201 - 422 1.1e-27 95.2 39.6 1 7 0.0038 2.3 8.8 0.1 15 26 255 266 250 266 0.90 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 GFI1-201 - 422 1.1e-27 95.2 39.6 2 7 2e-07 0.00012 22.3 0.3 2 26 270 295 269 295 0.89 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 GFI1-201 - 422 1.1e-27 95.2 39.6 3 7 2.6e-07 0.00016 22.0 0.4 1 26 298 323 298 323 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 GFI1-201 - 422 1.1e-27 95.2 39.6 4 7 2e-05 0.012 16.0 1.3 2 24 327 349 326 351 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 GFI1-201 - 422 1.1e-27 95.2 39.6 5 7 2.9e-09 1.7e-06 28.1 2.0 2 25 355 378 354 379 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 GFI1-201 - 422 1.1e-27 95.2 39.6 6 7 1e-07 6.1e-05 23.3 0.4 1 24 382 405 382 407 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 GFI1-201 - 422 1.1e-27 95.2 39.6 7 7 3.7 2.2e+03 -0.7 0.4 1 11 410 420 410 422 0.79 Zinc-finger double domain zf-C2H2_4 PF13894.6 24 GFI1-201 - 422 3.4e-22 77.2 41.4 1 6 3.2e-06 0.0019 18.9 1.7 1 24 255 278 255 278 0.97 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 GFI1-201 - 422 3.4e-22 77.2 41.4 2 6 0.00039 0.23 12.4 0.4 1 23 284 306 284 307 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 GFI1-201 - 422 3.4e-22 77.2 41.4 3 6 1.6e-06 0.00094 19.8 0.8 3 23 314 334 312 335 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 GFI1-201 - 422 3.4e-22 77.2 41.4 4 6 3.6e-05 0.022 15.6 2.8 1 23 340 362 340 363 0.91 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 GFI1-201 - 422 3.4e-22 77.2 41.4 5 6 1.5e-05 0.0088 16.8 1.9 1 23 368 390 368 391 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 GFI1-201 - 422 3.4e-22 77.2 41.4 6 6 3.5e-06 0.0021 18.8 0.3 1 24 396 419 396 419 0.95 C2H2-type zinc finger zf-C2H2_jaz PF12171.8 27 GFI1-201 - 422 1e-14 54.4 15.7 1 6 0.0039 2.3 8.6 0.1 2 22 255 275 254 275 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 GFI1-201 - 422 1e-14 54.4 15.7 2 6 0.00036 0.21 11.9 0.0 2 21 284 303 283 304 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 GFI1-201 - 422 1e-14 54.4 15.7 3 6 1.7e-05 0.01 16.1 0.0 2 21 312 331 311 332 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 GFI1-201 - 422 1e-14 54.4 15.7 4 6 0.0039 2.3 8.6 0.7 2 20 340 358 339 359 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 GFI1-201 - 422 1e-14 54.4 15.7 5 6 0.0087 5.2 7.5 0.5 2 20 368 386 367 390 0.91 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 GFI1-201 - 422 1e-14 54.4 15.7 6 6 0.0064 3.8 7.9 0.0 4 21 398 415 395 418 0.90 Zinc-finger double-stranded RNA-binding zf-C2H2_6 PF13912.6 27 GFI1-201 - 422 2.8e-13 49.5 39.3 1 6 0.0034 2 8.5 1.2 2 24 255 278 254 280 0.80 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 GFI1-201 - 422 2.8e-13 49.5 39.3 2 6 0.00027 0.16 12.0 1.2 2 26 284 308 284 309 0.92 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 GFI1-201 - 422 2.8e-13 49.5 39.3 3 6 0.00061 0.37 10.9 0.5 2 13 312 323 311 334 0.80 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 GFI1-201 - 422 2.8e-13 49.5 39.3 4 6 0.00089 0.53 10.4 0.7 2 12 340 350 340 359 0.90 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 GFI1-201 - 422 2.8e-13 49.5 39.3 5 6 5.4e-06 0.0033 17.4 2.8 2 24 368 390 368 392 0.97 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 GFI1-201 - 422 2.8e-13 49.5 39.3 6 6 4.3e-05 0.026 14.5 0.3 2 24 396 419 396 420 0.93 C2H2-type zinc finger zf-met PF12874.7 25 GFI1-201 - 422 9.3e-08 32.2 23.7 1 6 8.8 5.3e+03 -2.0 0.0 6 19 260 273 259 275 0.82 Zinc-finger of C2H2 type zf-met PF12874.7 25 GFI1-201 - 422 9.3e-08 32.2 23.7 2 6 0.00017 0.1 13.0 0.1 1 19 284 302 284 305 0.92 Zinc-finger of C2H2 type zf-met PF12874.7 25 GFI1-201 - 422 9.3e-08 32.2 23.7 3 6 2.2e-05 0.013 15.8 0.3 1 20 312 331 312 334 0.94 Zinc-finger of C2H2 type zf-met PF12874.7 25 GFI1-201 - 422 9.3e-08 32.2 23.7 4 6 8.9 5.3e+03 -2.0 0.5 3 19 342 358 340 359 0.76 Zinc-finger of C2H2 type zf-met PF12874.7 25 GFI1-201 - 422 9.3e-08 32.2 23.7 5 6 0.022 13 6.3 4.4 2 25 369 390 368 390 0.96 Zinc-finger of C2H2 type zf-met PF12874.7 25 GFI1-201 - 422 9.3e-08 32.2 23.7 6 6 0.0054 3.2 8.3 0.0 3 19 398 414 396 416 0.94 Zinc-finger of C2H2 type # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/GFI1-201.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/GFI1-201.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/GFI1-201.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/GFI1-201.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/GFI1-201.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:54:05 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-C2H2 PF00096.26 23 GFI1-202 - 422 2.1e-28 97.2 42.9 1 6 1.6e-06 0.00094 19.5 1.5 1 23 255 278 255 278 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 GFI1-202 - 422 2.1e-28 97.2 42.9 2 6 1.2e-05 0.0069 16.8 0.2 1 23 284 306 284 306 0.95 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 GFI1-202 - 422 2.1e-28 97.2 42.9 3 6 1.7e-08 1e-05 25.7 1.0 1 23 312 334 312 334 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 GFI1-202 - 422 2.1e-28 97.2 42.9 4 6 4.3e-06 0.0026 18.1 4.4 1 23 340 362 340 362 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 GFI1-202 - 422 2.1e-28 97.2 42.9 5 6 4.4e-08 2.6e-05 24.4 2.2 1 23 368 390 368 390 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 GFI1-202 - 422 2.1e-28 97.2 42.9 6 6 6.9e-06 0.0041 17.5 0.5 3 23 398 419 396 419 0.96 Zinc finger, C2H2 type zf-H2C2_2 PF13465.6 26 GFI1-202 - 422 1.1e-27 95.2 39.6 1 7 0.0038 2.3 8.8 0.1 15 26 255 266 250 266 0.90 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 GFI1-202 - 422 1.1e-27 95.2 39.6 2 7 2e-07 0.00012 22.3 0.3 2 26 270 295 269 295 0.89 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 GFI1-202 - 422 1.1e-27 95.2 39.6 3 7 2.6e-07 0.00016 22.0 0.4 1 26 298 323 298 323 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 GFI1-202 - 422 1.1e-27 95.2 39.6 4 7 2e-05 0.012 16.0 1.3 2 24 327 349 326 351 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 GFI1-202 - 422 1.1e-27 95.2 39.6 5 7 2.9e-09 1.7e-06 28.1 2.0 2 25 355 378 354 379 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 GFI1-202 - 422 1.1e-27 95.2 39.6 6 7 1e-07 6.1e-05 23.3 0.4 1 24 382 405 382 407 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 GFI1-202 - 422 1.1e-27 95.2 39.6 7 7 3.7 2.2e+03 -0.7 0.4 1 11 410 420 410 422 0.79 Zinc-finger double domain zf-C2H2_4 PF13894.6 24 GFI1-202 - 422 3.4e-22 77.2 41.4 1 6 3.2e-06 0.0019 18.9 1.7 1 24 255 278 255 278 0.97 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 GFI1-202 - 422 3.4e-22 77.2 41.4 2 6 0.00039 0.23 12.4 0.4 1 23 284 306 284 307 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 GFI1-202 - 422 3.4e-22 77.2 41.4 3 6 1.6e-06 0.00094 19.8 0.8 3 23 314 334 312 335 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 GFI1-202 - 422 3.4e-22 77.2 41.4 4 6 3.6e-05 0.022 15.6 2.8 1 23 340 362 340 363 0.91 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 GFI1-202 - 422 3.4e-22 77.2 41.4 5 6 1.5e-05 0.0088 16.8 1.9 1 23 368 390 368 391 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 GFI1-202 - 422 3.4e-22 77.2 41.4 6 6 3.5e-06 0.0021 18.8 0.3 1 24 396 419 396 419 0.95 C2H2-type zinc finger zf-C2H2_jaz PF12171.8 27 GFI1-202 - 422 1e-14 54.4 15.7 1 6 0.0039 2.3 8.6 0.1 2 22 255 275 254 275 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 GFI1-202 - 422 1e-14 54.4 15.7 2 6 0.00036 0.21 11.9 0.0 2 21 284 303 283 304 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 GFI1-202 - 422 1e-14 54.4 15.7 3 6 1.7e-05 0.01 16.1 0.0 2 21 312 331 311 332 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 GFI1-202 - 422 1e-14 54.4 15.7 4 6 0.0039 2.3 8.6 0.7 2 20 340 358 339 359 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 GFI1-202 - 422 1e-14 54.4 15.7 5 6 0.0087 5.2 7.5 0.5 2 20 368 386 367 390 0.91 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 GFI1-202 - 422 1e-14 54.4 15.7 6 6 0.0064 3.8 7.9 0.0 4 21 398 415 395 418 0.90 Zinc-finger double-stranded RNA-binding zf-C2H2_6 PF13912.6 27 GFI1-202 - 422 2.8e-13 49.5 39.3 1 6 0.0034 2 8.5 1.2 2 24 255 278 254 280 0.80 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 GFI1-202 - 422 2.8e-13 49.5 39.3 2 6 0.00027 0.16 12.0 1.2 2 26 284 308 284 309 0.92 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 GFI1-202 - 422 2.8e-13 49.5 39.3 3 6 0.00061 0.37 10.9 0.5 2 13 312 323 311 334 0.80 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 GFI1-202 - 422 2.8e-13 49.5 39.3 4 6 0.00089 0.53 10.4 0.7 2 12 340 350 340 359 0.90 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 GFI1-202 - 422 2.8e-13 49.5 39.3 5 6 5.4e-06 0.0033 17.4 2.8 2 24 368 390 368 392 0.97 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 GFI1-202 - 422 2.8e-13 49.5 39.3 6 6 4.3e-05 0.026 14.5 0.3 2 24 396 419 396 420 0.93 C2H2-type zinc finger zf-met PF12874.7 25 GFI1-202 - 422 9.3e-08 32.2 23.7 1 6 8.8 5.3e+03 -2.0 0.0 6 19 260 273 259 275 0.82 Zinc-finger of C2H2 type zf-met PF12874.7 25 GFI1-202 - 422 9.3e-08 32.2 23.7 2 6 0.00017 0.1 13.0 0.1 1 19 284 302 284 305 0.92 Zinc-finger of C2H2 type zf-met PF12874.7 25 GFI1-202 - 422 9.3e-08 32.2 23.7 3 6 2.2e-05 0.013 15.8 0.3 1 20 312 331 312 334 0.94 Zinc-finger of C2H2 type zf-met PF12874.7 25 GFI1-202 - 422 9.3e-08 32.2 23.7 4 6 8.9 5.3e+03 -2.0 0.5 3 19 342 358 340 359 0.76 Zinc-finger of C2H2 type zf-met PF12874.7 25 GFI1-202 - 422 9.3e-08 32.2 23.7 5 6 0.022 13 6.3 4.4 2 25 369 390 368 390 0.96 Zinc-finger of C2H2 type zf-met PF12874.7 25 GFI1-202 - 422 9.3e-08 32.2 23.7 6 6 0.0054 3.2 8.3 0.0 3 19 398 414 396 416 0.94 Zinc-finger of C2H2 type # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/GFI1-202.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/GFI1-202.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/GFI1-202.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/GFI1-202.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/GFI1-202.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:54:06 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-C2H2 PF00096.26 23 GFI1-203 - 422 2.1e-28 97.2 42.9 1 6 1.6e-06 0.00094 19.5 1.5 1 23 255 278 255 278 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 GFI1-203 - 422 2.1e-28 97.2 42.9 2 6 1.2e-05 0.0069 16.8 0.2 1 23 284 306 284 306 0.95 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 GFI1-203 - 422 2.1e-28 97.2 42.9 3 6 1.7e-08 1e-05 25.7 1.0 1 23 312 334 312 334 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 GFI1-203 - 422 2.1e-28 97.2 42.9 4 6 4.3e-06 0.0026 18.1 4.4 1 23 340 362 340 362 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 GFI1-203 - 422 2.1e-28 97.2 42.9 5 6 4.4e-08 2.6e-05 24.4 2.2 1 23 368 390 368 390 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 GFI1-203 - 422 2.1e-28 97.2 42.9 6 6 6.9e-06 0.0041 17.5 0.5 3 23 398 419 396 419 0.96 Zinc finger, C2H2 type zf-H2C2_2 PF13465.6 26 GFI1-203 - 422 1.1e-27 95.2 39.6 1 7 0.0038 2.3 8.8 0.1 15 26 255 266 250 266 0.90 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 GFI1-203 - 422 1.1e-27 95.2 39.6 2 7 2e-07 0.00012 22.3 0.3 2 26 270 295 269 295 0.89 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 GFI1-203 - 422 1.1e-27 95.2 39.6 3 7 2.6e-07 0.00016 22.0 0.4 1 26 298 323 298 323 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 GFI1-203 - 422 1.1e-27 95.2 39.6 4 7 2e-05 0.012 16.0 1.3 2 24 327 349 326 351 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 GFI1-203 - 422 1.1e-27 95.2 39.6 5 7 2.9e-09 1.7e-06 28.1 2.0 2 25 355 378 354 379 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 GFI1-203 - 422 1.1e-27 95.2 39.6 6 7 1e-07 6.1e-05 23.3 0.4 1 24 382 405 382 407 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 GFI1-203 - 422 1.1e-27 95.2 39.6 7 7 3.7 2.2e+03 -0.7 0.4 1 11 410 420 410 422 0.79 Zinc-finger double domain zf-C2H2_4 PF13894.6 24 GFI1-203 - 422 3.4e-22 77.2 41.4 1 6 3.2e-06 0.0019 18.9 1.7 1 24 255 278 255 278 0.97 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 GFI1-203 - 422 3.4e-22 77.2 41.4 2 6 0.00039 0.23 12.4 0.4 1 23 284 306 284 307 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 GFI1-203 - 422 3.4e-22 77.2 41.4 3 6 1.6e-06 0.00094 19.8 0.8 3 23 314 334 312 335 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 GFI1-203 - 422 3.4e-22 77.2 41.4 4 6 3.6e-05 0.022 15.6 2.8 1 23 340 362 340 363 0.91 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 GFI1-203 - 422 3.4e-22 77.2 41.4 5 6 1.5e-05 0.0088 16.8 1.9 1 23 368 390 368 391 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 GFI1-203 - 422 3.4e-22 77.2 41.4 6 6 3.5e-06 0.0021 18.8 0.3 1 24 396 419 396 419 0.95 C2H2-type zinc finger zf-C2H2_jaz PF12171.8 27 GFI1-203 - 422 1e-14 54.4 15.7 1 6 0.0039 2.3 8.6 0.1 2 22 255 275 254 275 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 GFI1-203 - 422 1e-14 54.4 15.7 2 6 0.00036 0.21 11.9 0.0 2 21 284 303 283 304 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 GFI1-203 - 422 1e-14 54.4 15.7 3 6 1.7e-05 0.01 16.1 0.0 2 21 312 331 311 332 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 GFI1-203 - 422 1e-14 54.4 15.7 4 6 0.0039 2.3 8.6 0.7 2 20 340 358 339 359 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 GFI1-203 - 422 1e-14 54.4 15.7 5 6 0.0087 5.2 7.5 0.5 2 20 368 386 367 390 0.91 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 GFI1-203 - 422 1e-14 54.4 15.7 6 6 0.0064 3.8 7.9 0.0 4 21 398 415 395 418 0.90 Zinc-finger double-stranded RNA-binding zf-C2H2_6 PF13912.6 27 GFI1-203 - 422 2.8e-13 49.5 39.3 1 6 0.0034 2 8.5 1.2 2 24 255 278 254 280 0.80 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 GFI1-203 - 422 2.8e-13 49.5 39.3 2 6 0.00027 0.16 12.0 1.2 2 26 284 308 284 309 0.92 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 GFI1-203 - 422 2.8e-13 49.5 39.3 3 6 0.00061 0.37 10.9 0.5 2 13 312 323 311 334 0.80 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 GFI1-203 - 422 2.8e-13 49.5 39.3 4 6 0.00089 0.53 10.4 0.7 2 12 340 350 340 359 0.90 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 GFI1-203 - 422 2.8e-13 49.5 39.3 5 6 5.4e-06 0.0033 17.4 2.8 2 24 368 390 368 392 0.97 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 GFI1-203 - 422 2.8e-13 49.5 39.3 6 6 4.3e-05 0.026 14.5 0.3 2 24 396 419 396 420 0.93 C2H2-type zinc finger zf-met PF12874.7 25 GFI1-203 - 422 9.3e-08 32.2 23.7 1 6 8.8 5.3e+03 -2.0 0.0 6 19 260 273 259 275 0.82 Zinc-finger of C2H2 type zf-met PF12874.7 25 GFI1-203 - 422 9.3e-08 32.2 23.7 2 6 0.00017 0.1 13.0 0.1 1 19 284 302 284 305 0.92 Zinc-finger of C2H2 type zf-met PF12874.7 25 GFI1-203 - 422 9.3e-08 32.2 23.7 3 6 2.2e-05 0.013 15.8 0.3 1 20 312 331 312 334 0.94 Zinc-finger of C2H2 type zf-met PF12874.7 25 GFI1-203 - 422 9.3e-08 32.2 23.7 4 6 8.9 5.3e+03 -2.0 0.5 3 19 342 358 340 359 0.76 Zinc-finger of C2H2 type zf-met PF12874.7 25 GFI1-203 - 422 9.3e-08 32.2 23.7 5 6 0.022 13 6.3 4.4 2 25 369 390 368 390 0.96 Zinc-finger of C2H2 type zf-met PF12874.7 25 GFI1-203 - 422 9.3e-08 32.2 23.7 6 6 0.0054 3.2 8.3 0.0 3 19 398 414 396 416 0.94 Zinc-finger of C2H2 type # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/GFI1-203.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/GFI1-203.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/GFI1-203.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/GFI1-203.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/GFI1-203.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:54:06 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/GFI1-204.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/GFI1-204.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/GFI1-204.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/GFI1-204.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/GFI1-204.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:54:07 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 GFI1B-201 - 330 2.5e-29 100.4 42.5 1 7 0.0055 3.5 8.2 0.1 11 26 159 174 150 174 0.83 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 GFI1B-201 - 330 2.5e-29 100.4 42.5 2 7 4.4e-08 2.8e-05 24.3 0.2 2 26 178 203 177 203 0.89 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 GFI1B-201 - 330 2.5e-29 100.4 42.5 3 7 7.2e-07 0.00046 20.5 1.4 1 26 206 231 206 231 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 GFI1B-201 - 330 2.5e-29 100.4 42.5 4 7 8.7e-06 0.0055 17.1 1.2 2 24 235 257 234 259 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 GFI1B-201 - 330 2.5e-29 100.4 42.5 5 7 1.4e-10 8.9e-08 32.2 2.0 2 25 263 286 262 287 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 GFI1B-201 - 330 2.5e-29 100.4 42.5 6 7 2.2e-08 1.4e-05 25.3 1.0 1 24 290 313 290 315 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 GFI1B-201 - 330 2.5e-29 100.4 42.5 7 7 5.2 3.3e+03 -1.2 0.4 1 8 318 325 318 328 0.69 Zinc-finger double domain zf-C2H2 PF00096.26 23 GFI1B-201 - 330 2.1e-27 94.0 48.2 1 6 1.8e-07 0.00011 22.4 2.9 1 23 163 186 163 186 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 GFI1B-201 - 330 2.1e-27 94.0 48.2 2 6 6.5e-06 0.0042 17.5 0.8 1 23 192 214 192 214 0.95 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 GFI1B-201 - 330 2.1e-27 94.0 48.2 3 6 5.8e-08 3.7e-05 23.9 0.8 1 23 220 242 220 242 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 GFI1B-201 - 330 2.1e-27 94.0 48.2 4 6 2.5e-05 0.016 15.6 4.4 1 23 248 270 248 270 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 GFI1B-201 - 330 2.1e-27 94.0 48.2 5 6 3e-08 1.9e-05 24.8 2.2 1 23 276 298 276 298 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 GFI1B-201 - 330 2.1e-27 94.0 48.2 6 6 5.4e-06 0.0035 17.7 1.2 1 23 304 327 304 327 0.95 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 GFI1B-201 - 330 5.6e-20 70.3 46.6 1 6 1.4e-05 0.0093 16.7 3.1 1 24 163 186 163 186 0.97 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 GFI1B-201 - 330 5.6e-20 70.3 46.6 2 6 0.00074 0.47 11.4 0.9 1 23 192 214 192 215 0.87 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 GFI1B-201 - 330 5.6e-20 70.3 46.6 3 6 2.2e-06 0.0014 19.3 0.8 1 23 220 242 220 243 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 GFI1B-201 - 330 5.6e-20 70.3 46.6 4 6 5e-05 0.032 15.1 2.8 1 23 248 270 248 271 0.91 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 GFI1B-201 - 330 5.6e-20 70.3 46.6 5 6 1e-05 0.0064 17.2 1.9 1 23 276 298 276 299 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 GFI1B-201 - 330 5.6e-20 70.3 46.6 6 6 4.2e-06 0.0027 18.4 1.1 1 24 304 327 304 327 0.97 C2H2-type zinc finger zf-C2H2_jaz PF12171.8 27 GFI1B-201 - 330 4.1e-12 46.0 22.3 1 6 0.0036 2.3 8.6 0.2 4 22 165 183 163 183 0.91 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 GFI1B-201 - 330 4.1e-12 46.0 22.3 2 6 0.00036 0.23 11.8 0.1 2 20 192 210 191 212 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 GFI1B-201 - 330 4.1e-12 46.0 22.3 3 6 0.00039 0.25 11.7 0.0 2 21 220 239 219 240 0.95 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 GFI1B-201 - 330 4.1e-12 46.0 22.3 4 6 0.0074 4.7 7.6 1.0 2 20 248 266 247 268 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 GFI1B-201 - 330 4.1e-12 46.0 22.3 5 6 0.006 3.9 7.9 0.5 2 20 276 294 275 298 0.91 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 GFI1B-201 - 330 4.1e-12 46.0 22.3 6 6 0.00088 0.56 10.6 0.1 2 23 304 325 303 328 0.91 Zinc-finger double-stranded RNA-binding zf-C2H2_6 PF13912.6 27 GFI1B-201 - 330 4.3e-08 33.0 43.0 1 6 0.0083 5.3 7.2 1.5 2 24 163 186 162 188 0.78 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 GFI1B-201 - 330 4.3e-08 33.0 43.0 2 6 8.6e-05 0.055 13.5 1.3 2 24 192 214 192 217 0.86 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 GFI1B-201 - 330 4.3e-08 33.0 43.0 3 6 0.019 12 6.0 0.3 2 13 220 231 219 242 0.81 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 GFI1B-201 - 330 4.3e-08 33.0 43.0 4 6 0.017 11 6.2 1.8 2 13 248 259 248 271 0.78 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 GFI1B-201 - 330 4.3e-08 33.0 43.0 5 6 3.7e-06 0.0024 17.8 2.8 2 24 276 298 276 300 0.97 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 GFI1B-201 - 330 4.3e-08 33.0 43.0 6 6 0.0038 2.4 8.2 0.8 2 24 304 327 304 328 0.92 C2H2-type zinc finger # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/GFI1B-201.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/GFI1B-201.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/GFI1B-201.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/GFI1B-201.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/GFI1B-201.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:54:07 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 GFI1B-202 - 330 2.5e-29 100.4 42.5 1 7 0.0055 3.5 8.2 0.1 11 26 159 174 150 174 0.83 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 GFI1B-202 - 330 2.5e-29 100.4 42.5 2 7 4.4e-08 2.8e-05 24.3 0.2 2 26 178 203 177 203 0.89 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 GFI1B-202 - 330 2.5e-29 100.4 42.5 3 7 7.2e-07 0.00046 20.5 1.4 1 26 206 231 206 231 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 GFI1B-202 - 330 2.5e-29 100.4 42.5 4 7 8.7e-06 0.0055 17.1 1.2 2 24 235 257 234 259 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 GFI1B-202 - 330 2.5e-29 100.4 42.5 5 7 1.4e-10 8.9e-08 32.2 2.0 2 25 263 286 262 287 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 GFI1B-202 - 330 2.5e-29 100.4 42.5 6 7 2.2e-08 1.4e-05 25.3 1.0 1 24 290 313 290 315 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 GFI1B-202 - 330 2.5e-29 100.4 42.5 7 7 5.2 3.3e+03 -1.2 0.4 1 8 318 325 318 328 0.69 Zinc-finger double domain zf-C2H2 PF00096.26 23 GFI1B-202 - 330 2.1e-27 94.0 48.2 1 6 1.8e-07 0.00011 22.4 2.9 1 23 163 186 163 186 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 GFI1B-202 - 330 2.1e-27 94.0 48.2 2 6 6.5e-06 0.0042 17.5 0.8 1 23 192 214 192 214 0.95 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 GFI1B-202 - 330 2.1e-27 94.0 48.2 3 6 5.8e-08 3.7e-05 23.9 0.8 1 23 220 242 220 242 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 GFI1B-202 - 330 2.1e-27 94.0 48.2 4 6 2.5e-05 0.016 15.6 4.4 1 23 248 270 248 270 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 GFI1B-202 - 330 2.1e-27 94.0 48.2 5 6 3e-08 1.9e-05 24.8 2.2 1 23 276 298 276 298 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 GFI1B-202 - 330 2.1e-27 94.0 48.2 6 6 5.4e-06 0.0035 17.7 1.2 1 23 304 327 304 327 0.95 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 GFI1B-202 - 330 5.6e-20 70.3 46.6 1 6 1.4e-05 0.0093 16.7 3.1 1 24 163 186 163 186 0.97 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 GFI1B-202 - 330 5.6e-20 70.3 46.6 2 6 0.00074 0.47 11.4 0.9 1 23 192 214 192 215 0.87 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 GFI1B-202 - 330 5.6e-20 70.3 46.6 3 6 2.2e-06 0.0014 19.3 0.8 1 23 220 242 220 243 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 GFI1B-202 - 330 5.6e-20 70.3 46.6 4 6 5e-05 0.032 15.1 2.8 1 23 248 270 248 271 0.91 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 GFI1B-202 - 330 5.6e-20 70.3 46.6 5 6 1e-05 0.0064 17.2 1.9 1 23 276 298 276 299 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 GFI1B-202 - 330 5.6e-20 70.3 46.6 6 6 4.2e-06 0.0027 18.4 1.1 1 24 304 327 304 327 0.97 C2H2-type zinc finger zf-C2H2_jaz PF12171.8 27 GFI1B-202 - 330 4.1e-12 46.0 22.3 1 6 0.0036 2.3 8.6 0.2 4 22 165 183 163 183 0.91 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 GFI1B-202 - 330 4.1e-12 46.0 22.3 2 6 0.00036 0.23 11.8 0.1 2 20 192 210 191 212 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 GFI1B-202 - 330 4.1e-12 46.0 22.3 3 6 0.00039 0.25 11.7 0.0 2 21 220 239 219 240 0.95 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 GFI1B-202 - 330 4.1e-12 46.0 22.3 4 6 0.0074 4.7 7.6 1.0 2 20 248 266 247 268 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 GFI1B-202 - 330 4.1e-12 46.0 22.3 5 6 0.006 3.9 7.9 0.5 2 20 276 294 275 298 0.91 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 GFI1B-202 - 330 4.1e-12 46.0 22.3 6 6 0.00088 0.56 10.6 0.1 2 23 304 325 303 328 0.91 Zinc-finger double-stranded RNA-binding zf-C2H2_6 PF13912.6 27 GFI1B-202 - 330 4.3e-08 33.0 43.0 1 6 0.0083 5.3 7.2 1.5 2 24 163 186 162 188 0.78 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 GFI1B-202 - 330 4.3e-08 33.0 43.0 2 6 8.6e-05 0.055 13.5 1.3 2 24 192 214 192 217 0.86 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 GFI1B-202 - 330 4.3e-08 33.0 43.0 3 6 0.019 12 6.0 0.3 2 13 220 231 219 242 0.81 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 GFI1B-202 - 330 4.3e-08 33.0 43.0 4 6 0.017 11 6.2 1.8 2 13 248 259 248 271 0.78 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 GFI1B-202 - 330 4.3e-08 33.0 43.0 5 6 3.7e-06 0.0024 17.8 2.8 2 24 276 298 276 300 0.97 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 GFI1B-202 - 330 4.3e-08 33.0 43.0 6 6 0.0038 2.4 8.2 0.8 2 24 304 327 304 328 0.92 C2H2-type zinc finger # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/GFI1B-202.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/GFI1B-202.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/GFI1B-202.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/GFI1B-202.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/GFI1B-202.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:54:08 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 GFI1B-203 - 284 1.7e-17 63.0 37.1 1 6 0.37 2.8e+02 2.2 0.6 11 22 159 170 150 171 0.81 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 GFI1B-203 - 284 1.7e-17 63.0 37.1 2 6 0.026 19 5.9 5.6 10 26 169 185 162 185 0.83 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 GFI1B-203 - 284 1.7e-17 63.0 37.1 3 6 6.1e-06 0.0046 17.3 1.2 2 24 189 211 188 213 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 GFI1B-203 - 284 1.7e-17 63.0 37.1 4 6 9.8e-11 7.3e-08 32.5 2.0 2 25 217 240 216 241 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 GFI1B-203 - 284 1.7e-17 63.0 37.1 5 6 1.6e-08 1.2e-05 25.5 1.0 1 24 244 267 244 269 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 GFI1B-203 - 284 1.7e-17 63.0 37.1 6 6 3.8 2.8e+03 -1.0 0.4 1 8 272 279 272 282 0.69 Zinc-finger double domain zf-C2H2 PF00096.26 23 GFI1B-203 - 284 1.8e-17 62.7 37.5 1 5 1.1 8.3e+02 0.8 0.7 1 8 163 170 163 173 0.88 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 GFI1B-203 - 284 1.8e-17 62.7 37.5 2 5 4.1e-08 3.1e-05 24.2 0.8 1 23 174 196 174 196 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 GFI1B-203 - 284 1.8e-17 62.7 37.5 3 5 1.8e-05 0.013 15.9 4.4 1 23 202 224 202 224 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 GFI1B-203 - 284 1.8e-17 62.7 37.5 4 5 2.1e-08 1.6e-05 25.1 2.2 1 23 230 252 230 252 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 GFI1B-203 - 284 1.8e-17 62.7 37.5 5 5 3.8e-06 0.0029 18.0 1.2 1 23 258 281 258 281 0.95 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 GFI1B-203 - 284 2.3e-13 49.7 34.8 1 5 7.2 5.4e+03 -1.2 0.6 1 8 163 170 163 172 0.83 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 GFI1B-203 - 284 2.3e-13 49.7 34.8 2 5 1.5e-06 0.0011 19.6 0.8 1 23 174 196 174 197 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 GFI1B-203 - 284 2.3e-13 49.7 34.8 3 5 3.5e-05 0.026 15.3 2.8 1 23 202 224 202 225 0.91 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 GFI1B-203 - 284 2.3e-13 49.7 34.8 4 5 7.1e-06 0.0053 17.5 1.9 1 23 230 252 230 253 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 GFI1B-203 - 284 2.3e-13 49.7 34.8 5 5 2.9e-06 0.0022 18.7 1.1 1 24 258 281 258 281 0.97 C2H2-type zinc finger # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/GFI1B-203.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/GFI1B-203.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/GFI1B-203.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/GFI1B-203.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/GFI1B-203.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:54:08 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/GFI1B-204.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/GFI1B-204.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/GFI1B-204.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/GFI1B-204.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/GFI1B-204.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:54:08 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/GFI1B-205.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/GFI1B-205.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/GFI1B-205.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/GFI1B-205.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/GFI1B-205.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:54:09 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/GFI1B-206.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/GFI1B-206.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/GFI1B-206.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/GFI1B-206.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/GFI1B-206.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:54:09 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-C2H2 PF00096.26 23 GFI1B-207 - 352 3.4e-27 93.3 48.2 1 6 1.8e-07 0.00012 22.3 2.9 1 23 163 186 163 186 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 GFI1B-207 - 352 3.4e-27 93.3 48.2 2 6 6.6e-06 0.0045 17.4 0.8 1 23 192 214 192 214 0.95 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 GFI1B-207 - 352 3.4e-27 93.3 48.2 3 6 5.8e-08 4e-05 23.8 0.8 1 23 242 264 242 264 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 GFI1B-207 - 352 3.4e-27 93.3 48.2 4 6 2.6e-05 0.018 15.5 4.4 1 23 270 292 270 292 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 GFI1B-207 - 352 3.4e-27 93.3 48.2 5 6 3e-08 2.1e-05 24.7 2.2 1 23 298 320 298 320 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 GFI1B-207 - 352 3.4e-27 93.3 48.2 6 6 5.5e-06 0.0038 17.6 1.2 1 23 326 349 326 349 0.95 Zinc finger, C2H2 type zf-H2C2_2 PF13465.6 26 GFI1B-207 - 352 4.3e-26 90.1 41.7 1 8 0.0055 3.8 8.1 0.1 11 26 159 174 150 174 0.83 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 GFI1B-207 - 352 4.3e-26 90.1 41.7 2 8 4.5e-08 3.1e-05 24.2 0.2 2 26 178 203 177 203 0.89 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 GFI1B-207 - 352 4.3e-26 90.1 41.7 3 8 8.2 5.7e+03 -1.9 0.0 1 10 206 215 206 225 0.85 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 GFI1B-207 - 352 4.3e-26 90.1 41.7 4 8 0.0011 0.73 10.4 0.2 11 26 238 253 230 253 0.90 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 GFI1B-207 - 352 4.3e-26 90.1 41.7 5 8 8.7e-06 0.006 17.0 1.2 2 24 257 279 256 281 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 GFI1B-207 - 352 4.3e-26 90.1 41.7 6 8 1.4e-10 9.7e-08 32.1 2.0 2 25 285 308 284 309 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 GFI1B-207 - 352 4.3e-26 90.1 41.7 7 8 2.2e-08 1.6e-05 25.1 1.0 1 24 312 335 312 337 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 GFI1B-207 - 352 4.3e-26 90.1 41.7 8 8 5.2 3.6e+03 -1.3 0.4 1 8 340 347 340 350 0.69 Zinc-finger double domain zf-C2H2_4 PF13894.6 24 GFI1B-207 - 352 9.1e-20 69.7 46.6 1 6 1.5e-05 0.01 16.6 3.1 1 24 163 186 163 186 0.97 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 GFI1B-207 - 352 9.1e-20 69.7 46.6 2 6 0.00074 0.51 11.3 0.9 1 23 192 214 192 215 0.87 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 GFI1B-207 - 352 9.1e-20 69.7 46.6 3 6 2.2e-06 0.0015 19.2 0.8 1 23 242 264 242 265 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 GFI1B-207 - 352 9.1e-20 69.7 46.6 4 6 5e-05 0.035 15.0 2.8 1 23 270 292 270 293 0.91 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 GFI1B-207 - 352 9.1e-20 69.7 46.6 5 6 1e-05 0.007 17.1 1.9 1 23 298 320 298 321 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 GFI1B-207 - 352 9.1e-20 69.7 46.6 6 6 4.2e-06 0.0029 18.3 1.1 1 24 326 349 326 349 0.97 C2H2-type zinc finger zf-C2H2_jaz PF12171.8 27 GFI1B-207 - 352 6.7e-12 45.4 22.3 1 6 0.0036 2.5 8.5 0.2 4 22 165 183 163 183 0.91 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 GFI1B-207 - 352 6.7e-12 45.4 22.3 2 6 0.00036 0.25 11.7 0.1 2 20 192 210 191 212 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 GFI1B-207 - 352 6.7e-12 45.4 22.3 3 6 0.00039 0.27 11.6 0.0 2 21 242 261 241 262 0.95 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 GFI1B-207 - 352 6.7e-12 45.4 22.3 4 6 0.0074 5.1 7.5 1.0 2 20 270 288 269 290 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 GFI1B-207 - 352 6.7e-12 45.4 22.3 5 6 0.006 4.2 7.8 0.5 2 20 298 316 297 320 0.91 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 GFI1B-207 - 352 6.7e-12 45.4 22.3 6 6 0.00088 0.61 10.4 0.1 2 23 326 347 325 350 0.91 Zinc-finger double-stranded RNA-binding zf-C2H2_6 PF13912.6 27 GFI1B-207 - 352 9.9e-08 31.8 43.2 1 6 0.0084 5.8 7.0 1.5 2 24 163 186 162 188 0.78 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 GFI1B-207 - 352 9.9e-08 31.8 43.2 2 6 0.00012 0.085 12.9 1.5 2 21 192 211 192 216 0.88 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 GFI1B-207 - 352 9.9e-08 31.8 43.2 3 6 0.019 13 5.9 0.3 2 13 242 253 241 264 0.81 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 GFI1B-207 - 352 9.9e-08 31.8 43.2 4 6 0.017 12 6.1 1.8 2 13 270 281 270 293 0.78 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 GFI1B-207 - 352 9.9e-08 31.8 43.2 5 6 3.8e-06 0.0026 17.7 2.8 2 24 298 320 298 322 0.97 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 GFI1B-207 - 352 9.9e-08 31.8 43.2 6 6 0.0038 2.6 8.1 0.8 2 24 326 349 326 350 0.92 C2H2-type zinc finger # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/GFI1B-207.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/GFI1B-207.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/GFI1B-207.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/GFI1B-207.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/GFI1B-207.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:54:10 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-C2H2 PF00096.26 23 GFI1B-208 - 288 8e-28 95.3 48.2 1 6 1.7e-07 9.4e-05 22.7 2.9 1 23 89 112 89 112 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 GFI1B-208 - 288 8e-28 95.3 48.2 2 6 6.2e-06 0.0035 17.7 0.8 1 23 118 140 118 140 0.95 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 GFI1B-208 - 288 8e-28 95.3 48.2 3 6 5.5e-08 3.1e-05 24.2 0.8 1 23 178 200 178 200 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 GFI1B-208 - 288 8e-28 95.3 48.2 4 6 2.4e-05 0.014 15.9 4.4 1 23 206 228 206 228 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 GFI1B-208 - 288 8e-28 95.3 48.2 5 6 2.9e-08 1.6e-05 25.1 2.2 1 23 234 256 234 256 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 GFI1B-208 - 288 8e-28 95.3 48.2 6 6 5.2e-06 0.0029 18.0 1.2 1 23 262 285 262 285 0.95 Zinc finger, C2H2 type zf-H2C2_2 PF13465.6 26 GFI1B-208 - 288 1.3e-27 94.9 43.1 1 8 0.0053 3 8.4 0.1 11 26 85 100 76 100 0.83 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 GFI1B-208 - 288 1.3e-27 94.9 43.1 2 8 4.2e-08 2.4e-05 24.6 0.2 2 26 104 129 103 129 0.89 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 GFI1B-208 - 288 1.3e-27 94.9 43.1 3 8 0.22 1.2e+02 3.3 0.1 1 18 132 149 132 150 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 GFI1B-208 - 288 1.3e-27 94.9 43.1 4 8 0.001 0.58 10.7 0.2 11 26 174 189 170 189 0.89 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 GFI1B-208 - 288 1.3e-27 94.9 43.1 5 8 8.3e-06 0.0047 17.3 1.2 2 24 193 215 192 217 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 GFI1B-208 - 288 1.3e-27 94.9 43.1 6 8 1.3e-10 7.5e-08 32.5 2.0 2 25 221 244 220 245 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 GFI1B-208 - 288 1.3e-27 94.9 43.1 7 8 2.1e-08 1.2e-05 25.5 1.0 1 24 248 271 248 273 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 GFI1B-208 - 288 1.3e-27 94.9 43.1 8 8 5.1 2.9e+03 -1.0 0.4 1 8 276 283 276 286 0.69 Zinc-finger double domain zf-C2H2_4 PF13894.6 24 GFI1B-208 - 288 2.2e-20 71.6 46.6 1 6 1.4e-05 0.0078 17.0 3.1 1 24 89 112 89 112 0.97 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 GFI1B-208 - 288 2.2e-20 71.6 46.6 2 6 0.0007 0.39 11.7 0.9 1 23 118 140 118 141 0.87 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 GFI1B-208 - 288 2.2e-20 71.6 46.6 3 6 2.1e-06 0.0012 19.6 0.8 1 23 178 200 178 201 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 GFI1B-208 - 288 2.2e-20 71.6 46.6 4 6 4.8e-05 0.027 15.3 2.8 1 23 206 228 206 229 0.91 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 GFI1B-208 - 288 2.2e-20 71.6 46.6 5 6 9.6e-06 0.0054 17.5 1.9 1 23 234 256 234 257 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 GFI1B-208 - 288 2.2e-20 71.6 46.6 6 6 4e-06 0.0022 18.7 1.1 1 24 262 285 262 285 0.97 C2H2-type zinc finger zf-C2H2_jaz PF12171.8 27 GFI1B-208 - 288 1.7e-12 47.2 22.3 1 6 0.0035 2 8.8 0.2 4 22 91 109 89 109 0.91 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 GFI1B-208 - 288 1.7e-12 47.2 22.3 2 6 0.00035 0.2 12.0 0.1 2 20 118 136 117 138 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 GFI1B-208 - 288 1.7e-12 47.2 22.3 3 6 0.00038 0.21 11.9 0.0 2 21 178 197 177 198 0.95 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 GFI1B-208 - 288 1.7e-12 47.2 22.3 4 6 0.0071 4 7.8 1.0 2 20 206 224 205 226 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 GFI1B-208 - 288 1.7e-12 47.2 22.3 5 6 0.0058 3.3 8.1 0.5 2 20 234 252 233 256 0.91 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 GFI1B-208 - 288 1.7e-12 47.2 22.3 6 6 0.00084 0.47 10.8 0.1 2 23 262 283 261 286 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_6 PF13912.6 27 GFI1B-208 - 288 2.4e-08 33.8 43.2 1 6 0.008 4.5 7.4 1.5 2 24 89 112 88 114 0.78 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 GFI1B-208 - 288 2.4e-08 33.8 43.2 2 6 0.00012 0.066 13.2 1.5 2 21 118 137 118 142 0.88 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 GFI1B-208 - 288 2.4e-08 33.8 43.2 3 6 0.018 10 6.3 0.3 2 13 178 189 177 200 0.81 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 GFI1B-208 - 288 2.4e-08 33.8 43.2 4 6 0.016 9.2 6.4 1.8 2 13 206 217 206 229 0.78 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 GFI1B-208 - 288 2.4e-08 33.8 43.2 5 6 3.6e-06 0.002 18.1 2.8 2 24 234 256 234 258 0.97 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 GFI1B-208 - 288 2.4e-08 33.8 43.2 6 6 0.0037 2.1 8.5 0.8 2 24 262 285 262 286 0.92 C2H2-type zinc finger zf-met PF12874.7 25 GFI1B-208 - 288 7.8e-07 29.3 36.2 1 6 0.089 50 4.5 0.3 1 19 89 107 89 109 0.83 Zinc-finger of C2H2 type zf-met PF12874.7 25 GFI1B-208 - 288 7.8e-07 29.3 36.2 2 6 0.00013 0.072 13.5 0.6 1 20 118 137 118 140 0.91 Zinc-finger of C2H2 type zf-met PF12874.7 25 GFI1B-208 - 288 7.8e-07 29.3 36.2 3 6 0.00062 0.35 11.3 0.2 1 20 178 197 178 200 0.95 Zinc-finger of C2H2 type zf-met PF12874.7 25 GFI1B-208 - 288 7.8e-07 29.3 36.2 4 6 0.42 2.4e+02 2.3 1.0 3 20 208 225 206 229 0.87 Zinc-finger of C2H2 type zf-met PF12874.7 25 GFI1B-208 - 288 7.8e-07 29.3 36.2 5 6 0.015 8.1 7.0 4.4 2 25 235 256 234 256 0.96 Zinc-finger of C2H2 type zf-met PF12874.7 25 GFI1B-208 - 288 7.8e-07 29.3 36.2 6 6 0.00039 0.22 12.0 0.2 1 22 262 283 262 285 0.91 Zinc-finger of C2H2 type # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/GFI1B-208.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/GFI1B-208.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/GFI1B-208.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/GFI1B-208.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/GFI1B-208.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:54:10 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-C2H2 PF00096.26 23 GLI2-201 - 1241 1.5e-15 56.6 34.1 1 6 0.007 18 6.0 0.1 3 17 94 110 92 111 0.91 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 GLI2-201 - 1241 1.5e-15 56.6 34.1 2 6 2.2e-06 0.0056 17.1 0.4 1 23 125 152 125 152 0.91 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 GLI2-201 - 1241 1.5e-15 56.6 34.1 3 6 8e-07 0.0021 18.4 1.6 1 23 158 182 158 182 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 GLI2-201 - 1241 1.5e-15 56.6 34.1 4 6 4e-06 0.01 16.2 0.7 1 23 188 213 188 213 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 GLI2-201 - 1241 1.5e-15 56.6 34.1 5 6 2.8e-07 0.00072 19.9 0.4 1 23 219 244 219 244 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 GLI2-201 - 1241 1.5e-15 56.6 34.1 6 6 0.99 2.5e+03 -0.7 1.4 15 23 373 382 373 382 0.91 Zinc finger, C2H2 type zf-H2C2_2 PF13465.6 26 GLI2-201 - 1241 2.8e-10 40.1 8.3 1 6 2.9 7.5e+03 -2.3 0.2 10 20 119 132 116 134 0.66 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 GLI2-201 - 1241 2.8e-10 40.1 8.3 2 6 6e-09 1.5e-05 25.2 0.8 2 25 145 170 144 171 0.90 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 GLI2-201 - 1241 2.8e-10 40.1 8.3 3 6 5.3e-10 1.4e-06 28.5 1.4 1 26 174 201 174 201 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 GLI2-201 - 1241 2.8e-10 40.1 8.3 4 6 0.1 2.6e+02 2.3 0.8 4 25 207 231 205 232 0.84 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 GLI2-201 - 1241 2.8e-10 40.1 8.3 5 6 0.18 4.5e+02 1.5 0.2 1 13 235 247 235 250 0.83 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 GLI2-201 - 1241 2.8e-10 40.1 8.3 6 6 1.1 2.9e+03 -1.0 0.5 2 10 374 383 373 392 0.78 Zinc-finger double domain # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/GLI2-201.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/GLI2-201.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/GLI2-201.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/GLI2-201.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/GLI2-201.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:54:10 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-C2H2 PF00096.26 23 GLI2-203 - 1586 7.6e-15 54.5 34.1 1 6 0.0092 24 5.7 0.1 3 17 439 455 437 456 0.91 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 GLI2-203 - 1586 7.6e-15 54.5 34.1 2 6 2.9e-06 0.0073 16.7 0.4 1 23 470 497 470 497 0.91 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 GLI2-203 - 1586 7.6e-15 54.5 34.1 3 6 1.1e-06 0.0027 18.1 1.6 1 23 503 527 503 527 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 GLI2-203 - 1586 7.6e-15 54.5 34.1 4 6 5.3e-06 0.014 15.9 0.7 1 23 533 558 533 558 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 GLI2-203 - 1586 7.6e-15 54.5 34.1 5 6 3.7e-07 0.00094 19.5 0.4 1 23 564 589 564 589 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 GLI2-203 - 1586 7.6e-15 54.5 34.1 6 6 1.3 3.3e+03 -1.1 1.4 15 23 718 727 718 727 0.91 Zinc finger, C2H2 type zf-H2C2_2 PF13465.6 26 GLI2-203 - 1586 6.3e-10 39.0 8.3 1 6 5.2 1.3e+04 -3.1 0.2 10 18 464 473 462 478 0.64 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 GLI2-203 - 1586 6.3e-10 39.0 8.3 2 6 7.9e-09 2e-05 24.8 0.8 2 25 490 515 489 516 0.90 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 GLI2-203 - 1586 6.3e-10 39.0 8.3 3 6 7e-10 1.8e-06 28.1 1.4 1 26 519 546 519 546 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 GLI2-203 - 1586 6.3e-10 39.0 8.3 4 6 0.13 3.5e+02 1.9 0.8 4 25 552 576 550 577 0.84 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 GLI2-203 - 1586 6.3e-10 39.0 8.3 5 6 0.23 5.9e+02 1.2 0.2 1 13 580 592 580 595 0.83 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 GLI2-203 - 1586 6.3e-10 39.0 8.3 6 6 1.6 4e+03 -1.5 0.5 2 10 719 728 718 736 0.79 Zinc-finger double domain # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/GLI2-203.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/GLI2-203.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/GLI2-203.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/GLI2-203.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/GLI2-203.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:54:11 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/GLI2-204.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/GLI2-204.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/GLI2-204.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/GLI2-204.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/GLI2-204.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:54:11 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/GLI2-205.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/GLI2-205.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/GLI2-205.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/GLI2-205.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/GLI2-205.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:54:11 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/GLI2-206.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/GLI2-206.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/GLI2-206.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/GLI2-206.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/GLI2-206.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:54:12 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/GLI2-207.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/GLI2-207.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/GLI2-207.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/GLI2-207.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/GLI2-207.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:54:12 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-C2H2 PF00096.26 23 GLI2-208 - 829 1.6e-16 59.7 34.8 1 7 0.0038 11 6.6 0.1 3 17 111 127 109 128 0.91 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 GLI2-208 - 829 1.6e-16 59.7 34.8 2 7 1.2e-06 0.0035 17.7 0.4 1 23 142 169 142 169 0.91 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 GLI2-208 - 829 1.6e-16 59.7 34.8 3 7 4.4e-07 0.0013 19.1 1.6 1 23 175 199 175 199 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 GLI2-208 - 829 1.6e-16 59.7 34.8 4 7 2.2e-06 0.0065 16.9 0.7 1 23 205 230 205 230 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 GLI2-208 - 829 1.6e-16 59.7 34.8 5 7 1.5e-07 0.00045 20.5 0.4 1 23 236 261 236 261 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 GLI2-208 - 829 1.6e-16 59.7 34.8 6 7 0.55 1.6e+03 -0.1 1.4 15 23 390 399 390 399 0.91 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 GLI2-208 - 829 1.6e-16 59.7 34.8 7 7 3.3 9.9e+03 -2.6 0.0 5 18 798 811 797 811 0.87 Zinc finger, C2H2 type zf-H2C2_2 PF13465.6 26 GLI2-208 - 829 7.4e-11 42.0 8.3 1 6 1.6 4.8e+03 -1.7 0.2 10 20 136 149 133 151 0.66 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 GLI2-208 - 829 7.4e-11 42.0 8.3 2 6 3.2e-09 9.7e-06 25.8 0.8 2 25 162 187 161 188 0.90 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 GLI2-208 - 829 7.4e-11 42.0 8.3 3 6 2.9e-10 8.6e-07 29.1 1.4 1 26 191 218 191 218 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 GLI2-208 - 829 7.4e-11 42.0 8.3 4 6 0.056 1.7e+02 2.9 0.8 4 25 224 248 222 249 0.84 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 GLI2-208 - 829 7.4e-11 42.0 8.3 5 6 0.098 2.9e+02 2.1 0.2 1 13 252 264 252 267 0.83 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 GLI2-208 - 829 7.4e-11 42.0 8.3 6 6 0.62 1.9e+03 -0.4 0.5 2 10 391 400 390 409 0.78 Zinc-finger double domain # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/GLI2-208.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/GLI2-208.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/GLI2-208.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/GLI2-208.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/GLI2-208.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:54:12 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-C2H2 PF00096.26 23 GLI2-209 - 1258 1.7e-15 56.5 34.1 1 6 0.0071 18 6.0 0.1 3 17 111 127 109 128 0.91 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 GLI2-209 - 1258 1.7e-15 56.5 34.1 2 6 2.2e-06 0.0056 17.1 0.4 1 23 142 169 142 169 0.91 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 GLI2-209 - 1258 1.7e-15 56.5 34.1 3 6 8.1e-07 0.0021 18.4 1.6 1 23 175 199 175 199 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 GLI2-209 - 1258 1.7e-15 56.5 34.1 4 6 4.1e-06 0.01 16.2 0.7 1 23 205 230 205 230 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 GLI2-209 - 1258 1.7e-15 56.5 34.1 5 6 2.8e-07 0.00073 19.9 0.4 1 23 236 261 236 261 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 GLI2-209 - 1258 1.7e-15 56.5 34.1 6 6 1 2.6e+03 -0.8 1.4 15 23 390 399 390 399 0.91 Zinc finger, C2H2 type zf-H2C2_2 PF13465.6 26 GLI2-209 - 1258 2.9e-10 40.1 8.3 1 6 3 7.6e+03 -2.3 0.2 10 20 136 149 133 151 0.66 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 GLI2-209 - 1258 2.9e-10 40.1 8.3 2 6 6.1e-09 1.6e-05 25.1 0.8 2 25 162 187 161 188 0.90 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 GLI2-209 - 1258 2.9e-10 40.1 8.3 3 6 5.4e-10 1.4e-06 28.5 1.4 1 26 191 218 191 218 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 GLI2-209 - 1258 2.9e-10 40.1 8.3 4 6 0.1 2.7e+02 2.3 0.8 4 25 224 248 222 249 0.84 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 GLI2-209 - 1258 2.9e-10 40.1 8.3 5 6 0.18 4.6e+02 1.5 0.2 1 13 252 264 252 267 0.83 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 GLI2-209 - 1258 2.9e-10 40.1 8.3 6 6 1.1 2.9e+03 -1.0 0.5 2 10 391 400 390 409 0.78 Zinc-finger double domain # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/GLI2-209.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/GLI2-209.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/GLI2-209.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/GLI2-209.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/GLI2-209.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:54:13 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-C2H2 PF00096.26 23 GLI2-210 - 1586 7.6e-15 54.5 34.1 1 6 0.0092 24 5.7 0.1 3 17 439 455 437 456 0.91 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 GLI2-210 - 1586 7.6e-15 54.5 34.1 2 6 2.9e-06 0.0073 16.7 0.4 1 23 470 497 470 497 0.91 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 GLI2-210 - 1586 7.6e-15 54.5 34.1 3 6 1.1e-06 0.0027 18.1 1.6 1 23 503 527 503 527 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 GLI2-210 - 1586 7.6e-15 54.5 34.1 4 6 5.3e-06 0.014 15.9 0.7 1 23 533 558 533 558 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 GLI2-210 - 1586 7.6e-15 54.5 34.1 5 6 3.7e-07 0.00094 19.5 0.4 1 23 564 589 564 589 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 GLI2-210 - 1586 7.6e-15 54.5 34.1 6 6 1.3 3.3e+03 -1.1 1.4 15 23 718 727 718 727 0.91 Zinc finger, C2H2 type zf-H2C2_2 PF13465.6 26 GLI2-210 - 1586 6.3e-10 39.0 8.3 1 6 5.2 1.3e+04 -3.1 0.2 10 18 464 473 462 478 0.64 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 GLI2-210 - 1586 6.3e-10 39.0 8.3 2 6 7.9e-09 2e-05 24.8 0.8 2 25 490 515 489 516 0.90 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 GLI2-210 - 1586 6.3e-10 39.0 8.3 3 6 7e-10 1.8e-06 28.1 1.4 1 26 519 546 519 546 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 GLI2-210 - 1586 6.3e-10 39.0 8.3 4 6 0.13 3.5e+02 1.9 0.8 4 25 552 576 550 577 0.84 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 GLI2-210 - 1586 6.3e-10 39.0 8.3 5 6 0.23 5.9e+02 1.2 0.2 1 13 580 592 580 595 0.83 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 GLI2-210 - 1586 6.3e-10 39.0 8.3 6 6 1.6 4e+03 -1.5 0.5 2 10 719 728 718 736 0.79 Zinc-finger double domain # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/GLI2-210.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/GLI2-210.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/GLI2-210.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/GLI2-210.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/GLI2-210.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:54:13 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-C2H2 PF00096.26 23 GLI2-211 - 812 1.4e-16 59.9 34.8 1 7 0.0038 11 6.7 0.1 3 17 94 110 92 111 0.91 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 GLI2-211 - 812 1.4e-16 59.9 34.8 2 7 1.1e-06 0.0034 17.7 0.4 1 23 125 152 125 152 0.91 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 GLI2-211 - 812 1.4e-16 59.9 34.8 3 7 4.3e-07 0.0013 19.1 1.6 1 23 158 182 158 182 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 GLI2-211 - 812 1.4e-16 59.9 34.8 4 7 2.1e-06 0.0064 16.9 0.7 1 23 188 213 188 213 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 GLI2-211 - 812 1.4e-16 59.9 34.8 5 7 1.5e-07 0.00044 20.5 0.4 1 23 219 244 219 244 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 GLI2-211 - 812 1.4e-16 59.9 34.8 6 7 0.54 1.6e+03 -0.1 1.4 15 23 373 382 373 382 0.91 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 GLI2-211 - 812 1.4e-16 59.9 34.8 7 7 3.2 9.7e+03 -2.6 0.0 5 18 781 794 780 794 0.87 Zinc finger, C2H2 type zf-H2C2_2 PF13465.6 26 GLI2-211 - 812 6.9e-11 42.1 8.3 1 6 1.6 4.7e+03 -1.7 0.2 10 20 119 132 116 134 0.66 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 GLI2-211 - 812 6.9e-11 42.1 8.3 2 6 3.2e-09 9.5e-06 25.8 0.8 2 25 145 170 144 171 0.90 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 GLI2-211 - 812 6.9e-11 42.1 8.3 3 6 2.8e-10 8.4e-07 29.1 1.4 1 26 174 201 174 201 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 GLI2-211 - 812 6.9e-11 42.1 8.3 4 6 0.055 1.6e+02 2.9 0.8 4 25 207 231 205 232 0.84 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 GLI2-211 - 812 6.9e-11 42.1 8.3 5 6 0.095 2.9e+02 2.2 0.2 1 13 235 247 235 250 0.83 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 GLI2-211 - 812 6.9e-11 42.1 8.3 6 6 0.61 1.8e+03 -0.4 0.5 2 10 374 383 373 392 0.78 Zinc-finger double domain # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/GLI2-211.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/GLI2-211.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/GLI2-211.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/GLI2-211.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/GLI2-211.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:54:13 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/GLI2-212.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/GLI2-212.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/GLI2-212.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/GLI2-212.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/GLI2-212.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:54:14 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/GLI2-213.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/GLI2-213.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/GLI2-213.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/GLI2-213.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/GLI2-213.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:54:14 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 GLI4-201 - 376 5.8e-52 171.9 48.7 1 8 6.5e-05 0.049 14.1 0.7 11 26 179 194 178 194 0.90 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 GLI4-201 - 376 5.8e-52 171.9 48.7 2 8 1e-09 7.6e-07 29.3 2.2 2 24 198 220 198 221 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 GLI4-201 - 376 5.8e-52 171.9 48.7 3 8 3.9e-09 2.9e-06 27.5 1.3 4 26 228 250 225 250 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 GLI4-201 - 376 5.8e-52 171.9 48.7 4 8 1.5e-09 1.1e-06 28.7 0.7 1 25 253 277 253 278 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 GLI4-201 - 376 5.8e-52 171.9 48.7 5 8 1.5e-12 1.1e-09 38.2 0.1 1 24 281 304 281 305 0.97 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 GLI4-201 - 376 5.8e-52 171.9 48.7 6 8 4.3e-11 3.2e-08 33.6 0.2 4 24 312 332 310 333 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 GLI4-201 - 376 5.8e-52 171.9 48.7 7 8 1.2e-10 9.2e-08 32.2 1.2 3 25 339 361 337 362 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 GLI4-201 - 376 5.8e-52 171.9 48.7 8 8 6.4 4.8e+03 -1.7 0.3 3 9 367 373 366 376 0.80 Zinc-finger double domain zf-C2H2 PF00096.26 23 GLI4-201 - 376 2.2e-40 134.9 45.4 1 7 3.6e-08 2.7e-05 24.4 2.1 1 23 183 205 183 205 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 GLI4-201 - 376 2.2e-40 134.9 45.4 2 7 4.4e-07 0.00033 21.0 2.0 1 23 211 233 211 233 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 GLI4-201 - 376 2.2e-40 134.9 45.4 3 7 4.6e-08 3.5e-05 24.0 3.4 1 23 239 261 239 261 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 GLI4-201 - 376 2.2e-40 134.9 45.4 4 7 4.5e-10 3.4e-07 30.4 0.3 1 23 267 289 267 289 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 GLI4-201 - 376 2.2e-40 134.9 45.4 5 7 0.00013 0.098 13.2 0.0 1 23 295 317 295 317 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 GLI4-201 - 376 2.2e-40 134.9 45.4 6 7 1.8e-08 1.3e-05 25.3 3.3 1 23 323 345 323 345 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 GLI4-201 - 376 2.2e-40 134.9 45.4 7 7 3.6e-07 0.00027 21.2 0.0 1 23 351 373 351 373 0.97 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 GLI4-201 - 376 1.4e-20 72.1 45.9 1 7 4.9e-05 0.037 14.9 1.7 1 23 183 205 183 206 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 GLI4-201 - 376 1.4e-20 72.1 45.9 2 7 0.00011 0.08 13.8 1.8 1 23 211 233 211 234 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 GLI4-201 - 376 1.4e-20 72.1 45.9 3 7 7.9e-05 0.059 14.2 2.5 1 23 239 261 239 262 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 GLI4-201 - 376 1.4e-20 72.1 45.9 4 7 8.6e-06 0.0064 17.2 0.4 1 23 267 289 267 290 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 GLI4-201 - 376 1.4e-20 72.1 45.9 5 7 0.0049 3.7 8.7 0.1 1 23 295 317 295 318 0.84 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 GLI4-201 - 376 1.4e-20 72.1 45.9 6 7 6.2e-06 0.0047 17.7 2.3 1 23 323 345 323 346 0.97 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 GLI4-201 - 376 1.4e-20 72.1 45.9 7 7 0.00017 0.13 13.2 0.1 1 23 351 373 351 374 0.94 C2H2-type zinc finger Zn-ribbon_8 PF09723.10 40 GLI4-201 - 376 1.7e-08 34.4 26.6 1 7 4.5e-06 0.0034 17.5 0.8 7 36 184 220 183 223 0.92 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 GLI4-201 - 376 1.7e-08 34.4 26.6 2 7 0.00024 0.18 11.9 3.9 6 34 211 246 210 249 0.88 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 GLI4-201 - 376 1.7e-08 34.4 26.6 3 7 0.0014 1 9.5 4.8 6 35 239 275 237 277 0.84 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 GLI4-201 - 376 1.7e-08 34.4 26.6 4 7 4.2e-05 0.031 14.4 1.8 6 34 267 302 265 305 0.91 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 GLI4-201 - 376 1.7e-08 34.4 26.6 5 7 0.00013 0.1 12.8 2.6 6 36 295 332 294 335 0.92 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 GLI4-201 - 376 1.7e-08 34.4 26.6 6 7 0.0033 2.4 8.3 3.5 6 34 323 358 321 362 0.78 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 GLI4-201 - 376 1.7e-08 34.4 26.6 7 7 0.18 1.4e+02 2.7 0.2 6 15 351 360 350 369 0.84 Zinc ribbon domain # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/GLI4-201.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/GLI4-201.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/GLI4-201.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/GLI4-201.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/GLI4-201.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:54:14 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/GLI4-202.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/GLI4-202.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/GLI4-202.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/GLI4-202.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/GLI4-202.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:54:15 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/GLI4-203.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/GLI4-203.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/GLI4-203.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/GLI4-203.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/GLI4-203.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:54:15 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/GLI4-204.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/GLI4-204.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/GLI4-204.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/GLI4-204.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/GLI4-204.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:54:15 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/GLI4-205.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/GLI4-205.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/GLI4-205.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/GLI4-205.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/GLI4-205.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:54:16 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/GLI4-206.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/GLI4-206.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/GLI4-206.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/GLI4-206.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/GLI4-206.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:54:16 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/GLI4-207.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/GLI4-207.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/GLI4-207.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/GLI4-207.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/GLI4-207.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:54:16 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/GLI4-208.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/GLI4-208.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/GLI4-208.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/GLI4-208.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/GLI4-208.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:54:17 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 GLI4-210 - 376 5.8e-52 171.9 48.7 1 8 6.5e-05 0.049 14.1 0.7 11 26 179 194 178 194 0.90 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 GLI4-210 - 376 5.8e-52 171.9 48.7 2 8 1e-09 7.6e-07 29.3 2.2 2 24 198 220 198 221 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 GLI4-210 - 376 5.8e-52 171.9 48.7 3 8 3.9e-09 2.9e-06 27.5 1.3 4 26 228 250 225 250 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 GLI4-210 - 376 5.8e-52 171.9 48.7 4 8 1.5e-09 1.1e-06 28.7 0.7 1 25 253 277 253 278 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 GLI4-210 - 376 5.8e-52 171.9 48.7 5 8 1.5e-12 1.1e-09 38.2 0.1 1 24 281 304 281 305 0.97 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 GLI4-210 - 376 5.8e-52 171.9 48.7 6 8 4.3e-11 3.2e-08 33.6 0.2 4 24 312 332 310 333 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 GLI4-210 - 376 5.8e-52 171.9 48.7 7 8 1.2e-10 9.2e-08 32.2 1.2 3 25 339 361 337 362 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 GLI4-210 - 376 5.8e-52 171.9 48.7 8 8 6.4 4.8e+03 -1.7 0.3 3 9 367 373 366 376 0.80 Zinc-finger double domain zf-C2H2 PF00096.26 23 GLI4-210 - 376 2.2e-40 134.9 45.4 1 7 3.6e-08 2.7e-05 24.4 2.1 1 23 183 205 183 205 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 GLI4-210 - 376 2.2e-40 134.9 45.4 2 7 4.4e-07 0.00033 21.0 2.0 1 23 211 233 211 233 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 GLI4-210 - 376 2.2e-40 134.9 45.4 3 7 4.6e-08 3.5e-05 24.0 3.4 1 23 239 261 239 261 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 GLI4-210 - 376 2.2e-40 134.9 45.4 4 7 4.5e-10 3.4e-07 30.4 0.3 1 23 267 289 267 289 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 GLI4-210 - 376 2.2e-40 134.9 45.4 5 7 0.00013 0.098 13.2 0.0 1 23 295 317 295 317 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 GLI4-210 - 376 2.2e-40 134.9 45.4 6 7 1.8e-08 1.3e-05 25.3 3.3 1 23 323 345 323 345 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 GLI4-210 - 376 2.2e-40 134.9 45.4 7 7 3.6e-07 0.00027 21.2 0.0 1 23 351 373 351 373 0.97 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 GLI4-210 - 376 1.4e-20 72.1 45.9 1 7 4.9e-05 0.037 14.9 1.7 1 23 183 205 183 206 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 GLI4-210 - 376 1.4e-20 72.1 45.9 2 7 0.00011 0.08 13.8 1.8 1 23 211 233 211 234 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 GLI4-210 - 376 1.4e-20 72.1 45.9 3 7 7.9e-05 0.059 14.2 2.5 1 23 239 261 239 262 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 GLI4-210 - 376 1.4e-20 72.1 45.9 4 7 8.6e-06 0.0064 17.2 0.4 1 23 267 289 267 290 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 GLI4-210 - 376 1.4e-20 72.1 45.9 5 7 0.0049 3.7 8.7 0.1 1 23 295 317 295 318 0.84 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 GLI4-210 - 376 1.4e-20 72.1 45.9 6 7 6.2e-06 0.0047 17.7 2.3 1 23 323 345 323 346 0.97 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 GLI4-210 - 376 1.4e-20 72.1 45.9 7 7 0.00017 0.13 13.2 0.1 1 23 351 373 351 374 0.94 C2H2-type zinc finger Zn-ribbon_8 PF09723.10 40 GLI4-210 - 376 1.7e-08 34.4 26.6 1 7 4.5e-06 0.0034 17.5 0.8 7 36 184 220 183 223 0.92 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 GLI4-210 - 376 1.7e-08 34.4 26.6 2 7 0.00024 0.18 11.9 3.9 6 34 211 246 210 249 0.88 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 GLI4-210 - 376 1.7e-08 34.4 26.6 3 7 0.0014 1 9.5 4.8 6 35 239 275 237 277 0.84 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 GLI4-210 - 376 1.7e-08 34.4 26.6 4 7 4.2e-05 0.031 14.4 1.8 6 34 267 302 265 305 0.91 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 GLI4-210 - 376 1.7e-08 34.4 26.6 5 7 0.00013 0.1 12.8 2.6 6 36 295 332 294 335 0.92 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 GLI4-210 - 376 1.7e-08 34.4 26.6 6 7 0.0033 2.4 8.3 3.5 6 34 323 358 321 362 0.78 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 GLI4-210 - 376 1.7e-08 34.4 26.6 7 7 0.18 1.4e+02 2.7 0.2 6 15 351 360 350 369 0.84 Zinc ribbon domain # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/GLI4-210.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/GLI4-210.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/GLI4-210.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/GLI4-210.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/GLI4-210.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:54:17 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 GLI4-211 - 381 6.3e-52 171.8 48.7 1 8 6.9e-05 0.05 14.1 0.7 11 26 184 199 183 199 0.90 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 GLI4-211 - 381 6.3e-52 171.8 48.7 2 8 1.1e-09 7.7e-07 29.3 2.2 2 24 203 225 203 226 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 GLI4-211 - 381 6.3e-52 171.8 48.7 3 8 4.1e-09 2.9e-06 27.4 1.3 4 26 233 255 230 255 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 GLI4-211 - 381 6.3e-52 171.8 48.7 4 8 1.6e-09 1.1e-06 28.7 0.7 1 25 258 282 258 283 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 GLI4-211 - 381 6.3e-52 171.8 48.7 5 8 1.6e-12 1.2e-09 38.2 0.1 1 24 286 309 286 310 0.97 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 GLI4-211 - 381 6.3e-52 171.8 48.7 6 8 4.5e-11 3.2e-08 33.6 0.2 4 24 317 337 315 338 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 GLI4-211 - 381 6.3e-52 171.8 48.7 7 8 1.3e-10 9.4e-08 32.2 1.2 3 25 344 366 342 367 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 GLI4-211 - 381 6.3e-52 171.8 48.7 8 8 6.8 4.8e+03 -1.7 0.3 3 9 372 378 371 381 0.80 Zinc-finger double domain zf-C2H2 PF00096.26 23 GLI4-211 - 381 2.8e-40 134.6 45.4 1 7 3.8e-08 2.7e-05 24.4 2.1 1 23 188 210 188 210 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 GLI4-211 - 381 2.8e-40 134.6 45.4 2 7 4.7e-07 0.00033 20.9 2.0 1 23 216 238 216 238 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 GLI4-211 - 381 2.8e-40 134.6 45.4 3 7 4.9e-08 3.5e-05 24.0 3.4 1 23 244 266 244 266 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 GLI4-211 - 381 2.8e-40 134.6 45.4 4 7 4.8e-10 3.4e-07 30.3 0.3 1 23 272 294 272 294 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 GLI4-211 - 381 2.8e-40 134.6 45.4 5 7 0.00014 0.099 13.1 0.0 1 23 300 322 300 322 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 GLI4-211 - 381 2.8e-40 134.6 45.4 6 7 1.9e-08 1.4e-05 25.3 3.3 1 23 328 350 328 350 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 GLI4-211 - 381 2.8e-40 134.6 45.4 7 7 3.8e-07 0.00027 21.2 0.0 1 23 356 378 356 378 0.97 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 GLI4-211 - 381 1.7e-20 71.9 45.9 1 7 5.2e-05 0.037 14.9 1.7 1 23 188 210 188 211 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 GLI4-211 - 381 1.7e-20 71.9 45.9 2 7 0.00011 0.082 13.8 1.8 1 23 216 238 216 239 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 GLI4-211 - 381 1.7e-20 71.9 45.9 3 7 8.4e-05 0.06 14.2 2.5 1 23 244 266 244 267 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 GLI4-211 - 381 1.7e-20 71.9 45.9 4 7 9.1e-06 0.0065 17.2 0.4 1 23 272 294 272 295 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 GLI4-211 - 381 1.7e-20 71.9 45.9 5 7 0.0052 3.7 8.6 0.1 1 23 300 322 300 323 0.84 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 GLI4-211 - 381 1.7e-20 71.9 45.9 6 7 6.6e-06 0.0047 17.6 2.3 1 23 328 350 328 351 0.97 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 GLI4-211 - 381 1.7e-20 71.9 45.9 7 7 0.00018 0.13 13.2 0.1 1 23 356 378 356 379 0.94 C2H2-type zinc finger Zn-ribbon_8 PF09723.10 40 GLI4-211 - 381 6.5e-09 35.8 25.3 1 6 3.9e-06 0.0028 17.7 0.5 7 36 189 225 188 227 0.92 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 GLI4-211 - 381 6.5e-09 35.8 25.3 2 6 0.0012 0.85 9.8 4.8 6 35 244 280 242 283 0.84 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 GLI4-211 - 381 6.5e-09 35.8 25.3 3 6 3.8e-05 0.028 14.6 1.6 6 34 272 307 271 310 0.90 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 GLI4-211 - 381 6.5e-09 35.8 25.3 4 6 0.00015 0.11 12.7 2.7 6 36 300 337 299 340 0.92 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 GLI4-211 - 381 6.5e-09 35.8 25.3 5 6 0.0033 2.3 8.4 3.4 6 34 328 363 327 367 0.77 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 GLI4-211 - 381 6.5e-09 35.8 25.3 6 6 0.19 1.4e+02 2.7 0.2 6 15 356 365 353 374 0.85 Zinc ribbon domain # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/GLI4-211.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/GLI4-211.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/GLI4-211.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/GLI4-211.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/GLI4-211.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:54:18 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-C2H2 PF00096.26 23 GLIS1-201 - 620 1.2e-14 53.9 24.7 1 5 0.012 24 5.6 0.1 3 23 197 220 196 220 0.82 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 GLIS1-201 - 620 1.2e-14 53.9 24.7 2 5 0.00048 0.96 10.0 0.4 1 23 229 256 229 256 0.89 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 GLIS1-201 - 620 1.2e-14 53.9 24.7 3 5 7e-07 0.0014 19.0 0.7 2 23 263 286 263 286 0.93 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 GLIS1-201 - 620 1.2e-14 53.9 24.7 4 5 6.8e-06 0.014 15.9 1.7 3 23 294 316 292 316 0.92 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 GLIS1-201 - 620 1.2e-14 53.9 24.7 5 5 1.6e-06 0.0032 17.8 0.2 1 23 322 346 322 346 0.94 Zinc finger, C2H2 type zf-H2C2_2 PF13465.6 26 GLIS1-201 - 620 5.2e-11 42.5 20.0 1 5 0.19 3.9e+02 1.8 0.1 2 17 212 231 211 232 0.68 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 GLIS1-201 - 620 5.2e-11 42.5 20.0 2 5 1.4e-06 0.0028 18.0 0.3 5 25 252 274 248 275 0.89 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 GLIS1-201 - 620 5.2e-11 42.5 20.0 3 5 2e-08 4e-05 23.9 0.8 1 26 278 305 278 305 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 GLIS1-201 - 620 5.2e-11 42.5 20.0 4 5 0.00049 0.98 10.0 0.6 4 25 311 334 309 335 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 GLIS1-201 - 620 5.2e-11 42.5 20.0 5 5 2.1 4.3e+03 -1.5 0.1 1 10 338 347 338 354 0.81 Zinc-finger double domain zf-C2H2_4 PF13894.6 24 GLIS1-201 - 620 1.3e-07 31.8 23.8 1 5 0.011 23 6.2 0.3 3 24 197 220 196 220 0.87 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 GLIS1-201 - 620 1.3e-07 31.8 23.8 2 5 0.1 2e+02 3.2 0.2 8 23 241 256 229 257 0.82 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 GLIS1-201 - 620 1.3e-07 31.8 23.8 3 5 0.00047 0.94 10.5 0.5 3 23 264 286 262 287 0.89 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 GLIS1-201 - 620 1.3e-07 31.8 23.8 4 5 0.0029 5.7 8.1 1.2 1 23 292 316 292 317 0.89 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 GLIS1-201 - 620 1.3e-07 31.8 23.8 5 5 2e-06 0.0041 17.8 0.2 1 23 322 346 322 347 0.93 C2H2-type zinc finger FOXP-CC PF16159.5 69 GLIS1-201 - 620 9.4e-07 29.4 16.9 1 5 3.6e-06 0.0072 16.9 0.7 4 34 194 224 191 228 0.89 FOXP coiled-coil domain FOXP-CC PF16159.5 69 GLIS1-201 - 620 9.4e-07 29.4 16.9 2 5 0.37 7.5e+02 0.9 0.1 6 20 230 244 227 258 0.69 FOXP coiled-coil domain FOXP-CC PF16159.5 69 GLIS1-201 - 620 9.4e-07 29.4 16.9 3 5 0.13 2.5e+02 2.4 0.0 5 29 262 286 259 292 0.88 FOXP coiled-coil domain FOXP-CC PF16159.5 69 GLIS1-201 - 620 9.4e-07 29.4 16.9 4 5 0.003 6 7.6 0.3 6 28 293 315 290 322 0.87 FOXP coiled-coil domain FOXP-CC PF16159.5 69 GLIS1-201 - 620 9.4e-07 29.4 16.9 5 5 0.00047 0.94 10.2 0.1 6 35 323 351 320 370 0.82 FOXP coiled-coil domain # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/GLIS1-201.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/GLIS1-201.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/GLIS1-201.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/GLIS1-201.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/GLIS1-201.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:54:18 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-C2H2 PF00096.26 23 GLIS1-202 - 795 4.6e-14 52.0 24.7 1 5 0.016 32 5.2 0.1 3 23 372 395 371 395 0.82 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 GLIS1-202 - 795 4.6e-14 52.0 24.7 2 5 0.00065 1.3 9.6 0.4 1 23 404 431 404 431 0.89 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 GLIS1-202 - 795 4.6e-14 52.0 24.7 3 5 9.3e-07 0.0019 18.6 0.7 2 23 438 461 438 461 0.93 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 GLIS1-202 - 795 4.6e-14 52.0 24.7 4 5 9.1e-06 0.018 15.5 1.7 3 23 469 491 467 491 0.92 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 GLIS1-202 - 795 4.6e-14 52.0 24.7 5 5 2.1e-06 0.0042 17.5 0.2 1 23 497 521 497 521 0.94 Zinc finger, C2H2 type zf-H2C2_2 PF13465.6 26 GLIS1-202 - 795 1.2e-10 41.3 19.4 1 5 0.26 5.2e+02 1.4 0.1 2 17 387 406 386 407 0.68 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 GLIS1-202 - 795 1.2e-10 41.3 19.4 2 5 1.9e-06 0.0038 17.6 0.3 5 25 427 449 423 450 0.89 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 GLIS1-202 - 795 1.2e-10 41.3 19.4 3 5 2.7e-08 5.3e-05 23.5 0.8 1 26 453 480 453 480 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 GLIS1-202 - 795 1.2e-10 41.3 19.4 4 5 0.00066 1.3 9.6 0.6 4 25 486 509 484 510 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 GLIS1-202 - 795 1.2e-10 41.3 19.4 5 5 2.8 5.7e+03 -1.9 0.1 1 10 513 522 513 528 0.80 Zinc-finger double domain zf-C2H2_4 PF13894.6 24 GLIS1-202 - 795 5.1e-07 30.0 23.8 1 5 0.015 31 5.8 0.3 3 24 372 395 371 395 0.87 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 GLIS1-202 - 795 5.1e-07 30.0 23.8 2 5 0.14 2.7e+02 2.8 0.2 8 23 416 431 404 432 0.82 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 GLIS1-202 - 795 5.1e-07 30.0 23.8 3 5 0.00063 1.3 10.1 0.5 3 23 439 461 437 462 0.89 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 GLIS1-202 - 795 5.1e-07 30.0 23.8 4 5 0.0038 7.7 7.7 1.2 1 23 467 491 467 492 0.89 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 GLIS1-202 - 795 5.1e-07 30.0 23.8 5 5 2.7e-06 0.0055 17.4 0.2 1 23 497 521 497 522 0.93 C2H2-type zinc finger # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/GLIS1-202.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/GLIS1-202.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/GLIS1-202.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/GLIS1-202.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/GLIS1-202.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:54:18 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-C2H2 PF00096.26 23 GLIS2-201 - 524 1.6e-12 47.2 33.7 1 4 0.02 46 4.8 3.2 1 23 202 229 202 229 0.90 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 GLIS2-201 - 524 1.6e-12 47.2 33.7 2 4 7.5e-08 0.00017 21.9 3.4 1 23 235 257 235 257 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 GLIS2-201 - 524 1.6e-12 47.2 33.7 3 4 1.8e-06 0.004 17.5 1.9 1 23 263 287 263 287 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 GLIS2-201 - 524 1.6e-12 47.2 33.7 4 4 2.1e-07 0.00048 20.4 2.3 1 23 293 317 293 317 0.97 Zinc finger, C2H2 type zf-H2C2_2 PF13465.6 26 GLIS2-201 - 524 1.6e-11 44.1 37.8 1 5 2 4.4e+03 -1.6 0.4 2 18 185 205 184 211 0.63 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 GLIS2-201 - 524 1.6e-11 44.1 37.8 2 5 4.4e-10 9.9e-07 28.9 3.3 5 25 225 245 224 246 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 GLIS2-201 - 524 1.6e-11 44.1 37.8 3 5 2.7e-09 6e-06 26.4 0.9 1 26 249 276 249 276 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 GLIS2-201 - 524 1.6e-11 44.1 37.8 4 5 0.0006 1.4 9.5 6.0 4 25 282 305 281 306 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 GLIS2-201 - 524 1.6e-11 44.1 37.8 5 5 1.1 2.6e+03 -0.8 0.5 1 9 309 317 309 321 0.82 Zinc-finger double domain # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/GLIS2-201.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/GLIS2-201.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/GLIS2-201.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/GLIS2-201.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/GLIS2-201.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:54:19 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-C2H2 PF00096.26 23 GLIS2-202 - 524 1.6e-12 47.2 33.7 1 4 0.02 46 4.8 3.2 1 23 202 229 202 229 0.90 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 GLIS2-202 - 524 1.6e-12 47.2 33.7 2 4 7.5e-08 0.00017 21.9 3.4 1 23 235 257 235 257 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 GLIS2-202 - 524 1.6e-12 47.2 33.7 3 4 1.8e-06 0.004 17.5 1.9 1 23 263 287 263 287 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 GLIS2-202 - 524 1.6e-12 47.2 33.7 4 4 2.1e-07 0.00048 20.4 2.3 1 23 293 317 293 317 0.97 Zinc finger, C2H2 type zf-H2C2_2 PF13465.6 26 GLIS2-202 - 524 1.6e-11 44.1 37.8 1 5 2 4.4e+03 -1.6 0.4 2 18 185 205 184 211 0.63 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 GLIS2-202 - 524 1.6e-11 44.1 37.8 2 5 4.4e-10 9.9e-07 28.9 3.3 5 25 225 245 224 246 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 GLIS2-202 - 524 1.6e-11 44.1 37.8 3 5 2.7e-09 6e-06 26.4 0.9 1 26 249 276 249 276 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 GLIS2-202 - 524 1.6e-11 44.1 37.8 4 5 0.0006 1.4 9.5 6.0 4 25 282 305 281 306 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 GLIS2-202 - 524 1.6e-11 44.1 37.8 5 5 1.1 2.6e+03 -0.8 0.5 1 9 309 317 309 321 0.82 Zinc-finger double domain # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/GLIS2-202.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/GLIS2-202.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/GLIS2-202.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/GLIS2-202.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/GLIS2-202.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:54:19 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-C2H2 PF00096.26 23 GTF3A-201 - 130 1.4e-08 34.7 10.2 1 3 3.9e-07 0.0007 19.9 1.5 2 23 12 36 11 36 0.95 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 GTF3A-201 - 130 1.4e-08 34.7 10.2 2 3 3.8e-07 0.00069 19.9 0.2 1 23 42 66 42 66 0.95 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 GTF3A-201 - 130 1.4e-08 34.7 10.2 3 3 2 3.6e+03 -1.2 0.1 13 20 83 90 78 91 0.74 Zinc finger, C2H2 type # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/GTF3A-201.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/GTF3A-201.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/GTF3A-201.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/GTF3A-201.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/GTF3A-201.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:54:20 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-C2H2 PF00096.26 23 GTF3A-202 - 183 1.2e-17 63.2 25.6 1 5 1.9e-05 0.018 15.5 0.2 1 23 7 31 7 31 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 GTF3A-202 - 183 1.2e-17 63.2 25.6 2 5 2.2e-08 2.1e-05 24.7 2.5 3 23 37 57 36 57 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 GTF3A-202 - 183 1.2e-17 63.2 25.6 3 5 1.3e-06 0.0012 19.2 1.5 2 23 65 89 64 89 0.95 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 GTF3A-202 - 183 1.2e-17 63.2 25.6 4 5 1.2e-06 0.0012 19.2 0.2 1 23 95 119 95 119 0.94 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 GTF3A-202 - 183 1.2e-17 63.2 25.6 5 5 5.9 5.6e+03 -1.8 0.1 13 20 136 143 131 144 0.74 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 GTF3A-202 - 183 2.5e-11 43.4 23.1 1 4 0.01 9.7 7.3 0.4 1 24 7 31 7 31 0.86 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 GTF3A-202 - 183 2.5e-11 43.4 23.1 2 4 5.1e-08 4.8e-05 23.9 0.9 3 23 37 57 35 58 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 GTF3A-202 - 183 2.5e-11 43.4 23.1 3 4 0.00019 0.18 12.7 1.1 2 24 65 89 64 89 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 GTF3A-202 - 183 2.5e-11 43.4 23.1 4 4 5.6e-05 0.053 14.4 0.2 1 23 95 119 95 120 0.92 C2H2-type zinc finger # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/GTF3A-202.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/GTF3A-202.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/GTF3A-202.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/GTF3A-202.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/GTF3A-202.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:54:20 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/GTF3A-203.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/GTF3A-203.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/GTF3A-203.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/GTF3A-203.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/GTF3A-203.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:54:20 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/GTF3A-204.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/GTF3A-204.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/GTF3A-204.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/GTF3A-204.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/GTF3A-204.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:54:21 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/GTF3A-205.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/GTF3A-205.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/GTF3A-205.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/GTF3A-205.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/GTF3A-205.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:54:21 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-C2H2 PF00096.26 23 GTF3A-206 - 130 1.4e-08 34.7 10.2 1 3 3.9e-07 0.0007 19.9 1.5 2 23 12 36 11 36 0.95 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 GTF3A-206 - 130 1.4e-08 34.7 10.2 2 3 3.8e-07 0.00069 19.9 0.2 1 23 42 66 42 66 0.95 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 GTF3A-206 - 130 1.4e-08 34.7 10.2 3 3 2 3.6e+03 -1.2 0.1 13 20 83 90 78 91 0.74 Zinc finger, C2H2 type # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/GTF3A-206.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/GTF3A-206.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/GTF3A-206.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/GTF3A-206.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/GTF3A-206.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:54:21 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-C2H2 PF00096.26 23 GTF3A-207 - 167 4.6e-12 45.7 27.2 1 4 1.8e-08 1.8e-05 24.9 2.5 3 23 21 41 20 41 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 GTF3A-207 - 167 4.6e-12 45.7 27.2 2 4 1e-06 0.001 19.4 1.5 2 23 49 73 48 73 0.95 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 GTF3A-207 - 167 4.6e-12 45.7 27.2 3 4 1e-06 0.001 19.4 0.2 1 23 79 103 79 103 0.94 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 GTF3A-207 - 167 4.6e-12 45.7 27.2 4 4 5 5e+03 -1.7 0.1 13 20 120 127 115 128 0.74 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 GTF3A-207 - 167 2.7e-09 37.1 22.4 1 4 4.3 4.3e+03 -0.9 0.3 2 6 7 11 7 14 0.84 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 GTF3A-207 - 167 2.7e-09 37.1 22.4 2 4 4.2e-08 4.2e-05 24.0 0.9 3 23 21 41 19 42 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 GTF3A-207 - 167 2.7e-09 37.1 22.4 3 4 0.00016 0.16 12.9 1.1 2 24 49 73 48 73 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 GTF3A-207 - 167 2.7e-09 37.1 22.4 4 4 4.6e-05 0.046 14.6 0.2 1 23 79 103 79 104 0.92 C2H2-type zinc finger # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/GTF3A-207.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/GTF3A-207.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/GTF3A-207.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/GTF3A-207.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/GTF3A-207.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:54:22 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/GTF3A-208.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/GTF3A-208.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/GTF3A-208.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/GTF3A-208.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/GTF3A-208.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:54:22 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-C2H2 PF00096.26 23 GTF3A-209 - 130 1.4e-08 34.7 10.2 1 3 3.9e-07 0.0007 19.9 1.5 2 23 12 36 11 36 0.95 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 GTF3A-209 - 130 1.4e-08 34.7 10.2 2 3 3.8e-07 0.00069 19.9 0.2 1 23 42 66 42 66 0.95 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 GTF3A-209 - 130 1.4e-08 34.7 10.2 3 3 2 3.6e+03 -1.2 0.1 13 20 83 90 78 91 0.74 Zinc finger, C2H2 type # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/GTF3A-209.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/GTF3A-209.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/GTF3A-209.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/GTF3A-209.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/GTF3A-209.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:54:22 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 GZF1-201 - 711 2.9e-53 176.0 69.2 1 11 0.003 2.7 8.6 0.9 13 25 312 327 308 328 0.76 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 GZF1-201 - 711 2.9e-53 176.0 69.2 2 11 0.002 1.8 9.1 0.6 4 26 334 359 331 359 0.82 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 GZF1-201 - 711 2.9e-53 176.0 69.2 3 11 3.9e-07 0.00035 20.9 5.2 1 26 362 388 362 388 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 GZF1-201 - 711 2.9e-53 176.0 69.2 4 11 0.036 32 5.2 0.1 3 22 393 414 391 418 0.77 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 GZF1-201 - 711 2.9e-53 176.0 69.2 5 11 1.7e-07 0.00015 22.0 0.1 1 25 421 445 421 446 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 GZF1-201 - 711 2.9e-53 176.0 69.2 6 11 5.2e-11 4.7e-08 33.1 0.1 1 25 449 473 449 474 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 GZF1-201 - 711 2.9e-53 176.0 69.2 7 11 2.9e-09 2.6e-06 27.6 1.6 2 26 478 502 477 502 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 GZF1-201 - 711 2.9e-53 176.0 69.2 8 11 2.3e-07 0.00021 21.6 3.0 2 25 506 529 505 530 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 GZF1-201 - 711 2.9e-53 176.0 69.2 9 11 2e-11 1.8e-08 34.4 1.0 2 25 534 557 533 558 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 GZF1-201 - 711 2.9e-53 176.0 69.2 10 11 4e-10 3.6e-07 30.3 0.1 1 25 561 585 561 586 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 GZF1-201 - 711 2.9e-53 176.0 69.2 11 11 0.088 79 3.9 0.1 2 16 590 604 589 605 0.90 Zinc-finger double domain zf-C2H2 PF00096.26 23 GZF1-201 - 711 2.8e-36 121.9 85.8 1 10 0.091 81 4.0 3.7 1 23 317 340 317 340 0.88 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 GZF1-201 - 711 2.8e-36 121.9 85.8 2 10 1.4e-06 0.0012 19.1 5.0 1 23 348 371 348 371 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 GZF1-201 - 711 2.8e-36 121.9 85.8 3 10 1.1e-06 0.001 19.4 0.8 1 23 377 400 377 400 0.94 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 GZF1-201 - 711 2.8e-36 121.9 85.8 4 10 1.8e-05 0.017 15.6 1.0 1 23 407 429 407 429 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 GZF1-201 - 711 2.8e-36 121.9 85.8 5 10 1e-07 9e-05 22.7 0.2 3 23 437 457 435 457 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 GZF1-201 - 711 2.8e-36 121.9 85.8 6 10 0.00017 0.15 12.6 3.3 1 21 463 483 463 485 0.95 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 GZF1-201 - 711 2.8e-36 121.9 85.8 7 10 6.6e-07 0.00059 20.1 2.4 1 23 491 513 491 513 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 GZF1-201 - 711 2.8e-36 121.9 85.8 8 10 5.4e-06 0.0048 17.3 1.2 1 23 519 541 519 541 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 GZF1-201 - 711 2.8e-36 121.9 85.8 9 10 1.1e-06 0.00096 19.5 2.4 1 23 547 569 547 569 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 GZF1-201 - 711 2.8e-36 121.9 85.8 10 10 1.7e-07 0.00016 22.0 1.4 1 23 575 597 575 597 0.97 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 GZF1-201 - 711 6.4e-32 107.5 80.9 1 10 0.00054 0.48 11.4 4.3 1 24 317 340 317 340 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 GZF1-201 - 711 6.4e-32 107.5 80.9 2 10 9.8e-05 0.088 13.7 3.9 1 24 348 371 348 371 0.97 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 GZF1-201 - 711 6.4e-32 107.5 80.9 3 10 4.9e-07 0.00044 20.9 1.0 1 24 377 400 377 400 0.98 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 GZF1-201 - 711 6.4e-32 107.5 80.9 4 10 4.1e-05 0.037 14.9 0.8 1 23 407 429 407 430 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 GZF1-201 - 711 6.4e-32 107.5 80.9 5 10 1.5e-06 0.0013 19.3 0.2 2 23 436 457 435 458 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 GZF1-201 - 711 6.4e-32 107.5 80.9 6 10 0.0042 3.8 8.6 2.8 1 22 463 483 463 485 0.80 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 GZF1-201 - 711 6.4e-32 107.5 80.9 7 10 0.00015 0.13 13.1 1.7 1 19 491 509 491 513 0.89 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 GZF1-201 - 711 6.4e-32 107.5 80.9 8 10 4e-06 0.0036 18.0 1.3 1 23 519 541 519 542 0.97 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 GZF1-201 - 711 6.4e-32 107.5 80.9 9 10 1.9e-06 0.0017 19.0 1.7 1 23 547 569 547 570 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 GZF1-201 - 711 6.4e-32 107.5 80.9 10 10 9e-06 0.0081 16.9 0.5 1 23 575 597 575 598 0.91 C2H2-type zinc finger BTB PF00651.31 111 GZF1-201 - 711 4.2e-23 81.7 2.1 1 1 7.8e-26 7e-23 81.0 2.1 2 108 22 130 21 133 0.94 BTB/POZ domain zf-C2H2_11 PF16622.5 29 GZF1-201 - 711 1.8e-10 40.4 52.5 1 9 0.015 14 5.6 2.3 5 28 348 371 346 371 0.95 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 GZF1-201 - 711 1.8e-10 40.4 52.5 2 9 0.058 52 3.7 0.1 7 28 379 400 377 401 0.91 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 GZF1-201 - 711 1.8e-10 40.4 52.5 3 9 0.024 21 5.0 1.6 5 23 407 425 406 428 0.93 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 GZF1-201 - 711 1.8e-10 40.4 52.5 4 9 1.7e-05 0.015 15.0 0.2 7 26 437 456 435 457 0.96 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 GZF1-201 - 711 1.8e-10 40.4 52.5 5 9 0.0062 5.6 6.8 0.2 7 23 465 481 463 483 0.80 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 GZF1-201 - 711 1.8e-10 40.4 52.5 6 9 0.0012 1.1 9.1 0.3 7 26 493 512 490 513 0.93 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 GZF1-201 - 711 1.8e-10 40.4 52.5 7 9 0.24 2.2e+02 1.7 0.3 5 24 519 538 516 541 0.87 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 GZF1-201 - 711 1.8e-10 40.4 52.5 8 9 0.00017 0.15 11.9 2.0 7 26 549 568 547 569 0.95 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 GZF1-201 - 711 1.8e-10 40.4 52.5 9 9 0.00016 0.14 11.9 0.3 7 24 577 594 574 597 0.92 zinc-finger C2H2-type zf-C2H2_6 PF13912.6 27 GZF1-201 - 711 2.4e-10 40.1 76.2 1 10 0.0045 4 7.5 4.3 2 24 317 340 316 341 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 GZF1-201 - 711 2.4e-10 40.1 76.2 2 10 0.0038 3.4 7.8 3.2 1 26 347 372 347 374 0.84 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 GZF1-201 - 711 2.4e-10 40.1 76.2 3 10 0.1 94 3.2 1.1 1 12 376 387 376 390 0.91 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 GZF1-201 - 711 2.4e-10 40.1 76.2 4 10 0.00015 0.13 12.3 1.7 1 24 406 429 406 431 0.96 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 GZF1-201 - 711 2.4e-10 40.1 76.2 5 10 4.5e-05 0.041 13.9 0.2 2 24 435 457 435 460 0.92 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 GZF1-201 - 711 2.4e-10 40.1 76.2 6 10 0.00013 0.12 12.4 1.9 2 24 463 485 463 488 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 GZF1-201 - 711 2.4e-10 40.1 76.2 7 10 0.014 13 6.0 1.0 3 13 492 502 491 513 0.81 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 GZF1-201 - 711 2.4e-10 40.1 76.2 8 10 0.54 4.9e+02 0.9 0.8 2 12 519 529 519 541 0.79 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 GZF1-201 - 711 2.4e-10 40.1 76.2 9 10 5.6e-07 0.0005 20.0 1.5 2 24 547 569 547 572 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 GZF1-201 - 711 2.4e-10 40.1 76.2 10 10 0.48 4.3e+02 1.1 0.1 3 12 576 585 575 597 0.87 C2H2-type zinc finger zf-C2H2_jaz PF12171.8 27 GZF1-201 - 711 1.6e-08 34.6 43.7 1 10 0.03 27 5.2 2.1 2 20 317 335 316 337 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 GZF1-201 - 711 1.6e-08 34.6 43.7 2 10 1.2 1.1e+03 0.1 0.7 2 21 348 367 347 368 0.87 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 GZF1-201 - 711 1.6e-08 34.6 43.7 3 10 0.00028 0.25 11.7 0.4 2 21 377 396 376 397 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 GZF1-201 - 711 1.6e-08 34.6 43.7 4 10 0.014 13 6.2 0.0 2 24 407 429 406 429 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 GZF1-201 - 711 1.6e-08 34.6 43.7 5 10 0.029 26 5.2 0.0 4 22 437 455 435 455 0.96 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 GZF1-201 - 711 1.6e-08 34.6 43.7 6 10 3.4 3.1e+03 -1.4 0.2 2 14 463 475 462 483 0.69 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 GZF1-201 - 711 1.6e-08 34.6 43.7 7 10 0.0012 1.1 9.6 0.4 2 20 491 509 490 511 0.89 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 GZF1-201 - 711 1.6e-08 34.6 43.7 8 10 0.034 31 5.0 0.6 2 22 519 539 518 539 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 GZF1-201 - 711 1.6e-08 34.6 43.7 9 10 0.036 33 4.9 0.5 4 21 549 566 546 567 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 GZF1-201 - 711 1.6e-08 34.6 43.7 10 10 0.00041 0.37 11.1 0.0 2 21 575 594 574 595 0.93 Zinc-finger double-stranded RNA-binding zf-met PF12874.7 25 GZF1-201 - 711 2.3e-08 34.1 59.5 1 10 0.041 37 4.9 1.9 1 19 317 335 317 338 0.92 Zinc-finger of C2H2 type zf-met PF12874.7 25 GZF1-201 - 711 2.3e-08 34.1 59.5 2 10 0.0014 1.2 9.6 1.9 1 21 348 368 348 369 0.93 Zinc-finger of C2H2 type zf-met PF12874.7 25 GZF1-201 - 711 2.3e-08 34.1 59.5 3 10 0.00036 0.32 11.4 0.0 3 19 379 395 377 396 0.93 Zinc-finger of C2H2 type zf-met PF12874.7 25 GZF1-201 - 711 2.3e-08 34.1 59.5 4 10 0.35 3.1e+02 2.0 0.3 3 21 409 427 407 430 0.85 Zinc-finger of C2H2 type zf-met PF12874.7 25 GZF1-201 - 711 2.3e-08 34.1 59.5 5 10 0.0025 2.2 8.8 0.1 3 22 437 456 435 458 0.90 Zinc-finger of C2H2 type zf-met PF12874.7 25 GZF1-201 - 711 2.3e-08 34.1 59.5 6 10 1.6 1.4e+03 -0.1 0.2 1 17 463 479 463 483 0.76 Zinc-finger of C2H2 type zf-met PF12874.7 25 GZF1-201 - 711 2.3e-08 34.1 59.5 7 10 0.00084 0.76 10.3 1.0 1 20 491 510 491 514 0.88 Zinc-finger of C2H2 type zf-met PF12874.7 25 GZF1-201 - 711 2.3e-08 34.1 59.5 8 10 0.015 13 6.3 1.0 1 21 519 539 519 541 0.90 Zinc-finger of C2H2 type zf-met PF12874.7 25 GZF1-201 - 711 2.3e-08 34.1 59.5 9 10 0.21 1.9e+02 2.6 1.2 1 20 547 566 547 570 0.87 Zinc-finger of C2H2 type zf-met PF12874.7 25 GZF1-201 - 711 2.3e-08 34.1 59.5 10 10 3.8e-05 0.034 14.5 0.1 1 20 575 594 575 596 0.94 Zinc-finger of C2H2 type # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/GZF1-201.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/GZF1-201.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/GZF1-201.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/GZF1-201.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/GZF1-201.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:54:23 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 GZF1-202 - 691 2e-53 176.5 69.2 1 11 0.0029 2.6 8.6 0.9 13 25 292 307 288 308 0.76 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 GZF1-202 - 691 2e-53 176.5 69.2 2 11 0.0019 1.7 9.2 0.6 4 26 314 339 311 339 0.82 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 GZF1-202 - 691 2e-53 176.5 69.2 3 11 3.8e-07 0.00034 20.9 5.2 1 26 342 368 342 368 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 GZF1-202 - 691 2e-53 176.5 69.2 4 11 0.035 31 5.2 0.1 3 22 373 394 371 398 0.77 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 GZF1-202 - 691 2e-53 176.5 69.2 5 11 1.6e-07 0.00015 22.1 0.1 1 25 401 425 401 426 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 GZF1-202 - 691 2e-53 176.5 69.2 6 11 5e-11 4.5e-08 33.2 0.1 1 25 429 453 429 454 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 GZF1-202 - 691 2e-53 176.5 69.2 7 11 2.8e-09 2.5e-06 27.6 1.6 2 26 458 482 457 482 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 GZF1-202 - 691 2e-53 176.5 69.2 8 11 2.3e-07 0.0002 21.6 3.0 2 25 486 509 485 510 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 GZF1-202 - 691 2e-53 176.5 69.2 9 11 1.9e-11 1.7e-08 34.5 1.0 2 25 514 537 513 538 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 GZF1-202 - 691 2e-53 176.5 69.2 10 11 3.8e-10 3.4e-07 30.4 0.1 1 25 541 565 541 566 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 GZF1-202 - 691 2e-53 176.5 69.2 11 11 0.085 76 4.0 0.1 2 16 570 584 569 585 0.90 Zinc-finger double domain zf-C2H2 PF00096.26 23 GZF1-202 - 691 2e-36 122.4 85.8 1 10 0.088 79 4.0 3.7 1 23 297 320 297 320 0.88 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 GZF1-202 - 691 2e-36 122.4 85.8 2 10 1.3e-06 0.0012 19.2 5.0 1 23 328 351 328 351 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 GZF1-202 - 691 2e-36 122.4 85.8 3 10 1.1e-06 0.00099 19.4 0.8 1 23 357 380 357 380 0.94 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 GZF1-202 - 691 2e-36 122.4 85.8 4 10 1.8e-05 0.016 15.6 1.0 1 23 387 409 387 409 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 GZF1-202 - 691 2e-36 122.4 85.8 5 10 9.7e-08 8.7e-05 22.8 0.2 3 23 417 437 415 437 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 GZF1-202 - 691 2e-36 122.4 85.8 6 10 0.00016 0.14 12.6 3.3 1 21 443 463 443 465 0.95 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 GZF1-202 - 691 2e-36 122.4 85.8 7 10 6.4e-07 0.00057 20.2 2.4 1 23 471 493 471 493 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 GZF1-202 - 691 2e-36 122.4 85.8 8 10 5.2e-06 0.0047 17.3 1.2 1 23 499 521 499 521 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 GZF1-202 - 691 2e-36 122.4 85.8 9 10 1e-06 0.00093 19.5 2.4 1 23 527 549 527 549 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 GZF1-202 - 691 2e-36 122.4 85.8 10 10 1.7e-07 0.00015 22.0 1.4 1 23 555 577 555 577 0.97 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 GZF1-202 - 691 4.7e-32 107.9 80.9 1 10 0.00052 0.47 11.4 4.3 1 24 297 320 297 320 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 GZF1-202 - 691 4.7e-32 107.9 80.9 2 10 9.5e-05 0.085 13.7 3.9 1 24 328 351 328 351 0.97 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 GZF1-202 - 691 4.7e-32 107.9 80.9 3 10 4.8e-07 0.00043 20.9 1.0 1 24 357 380 357 380 0.98 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 GZF1-202 - 691 4.7e-32 107.9 80.9 4 10 4e-05 0.036 14.9 0.8 1 23 387 409 387 410 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 GZF1-202 - 691 4.7e-32 107.9 80.9 5 10 1.4e-06 0.0013 19.4 0.2 2 23 416 437 415 438 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 GZF1-202 - 691 4.7e-32 107.9 80.9 6 10 0.0041 3.7 8.7 2.8 1 22 443 463 443 465 0.80 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 GZF1-202 - 691 4.7e-32 107.9 80.9 7 10 0.00014 0.13 13.2 1.7 1 19 471 489 471 493 0.89 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 GZF1-202 - 691 4.7e-32 107.9 80.9 8 10 3.8e-06 0.0034 18.1 1.3 1 23 499 521 499 522 0.97 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 GZF1-202 - 691 4.7e-32 107.9 80.9 9 10 1.8e-06 0.0016 19.1 1.7 1 23 527 549 527 550 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 GZF1-202 - 691 4.7e-32 107.9 80.9 10 10 8.7e-06 0.0078 17.0 0.5 1 23 555 577 555 578 0.91 C2H2-type zinc finger BTB PF00651.31 111 GZF1-202 - 691 4e-23 81.8 2.1 1 1 7.4e-26 6.7e-23 81.0 2.1 2 108 2 110 1 113 0.94 BTB/POZ domain zf-C2H2_11 PF16622.5 29 GZF1-202 - 691 1.3e-10 40.8 52.5 1 9 0.015 13 5.6 2.3 5 28 328 351 326 351 0.95 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 GZF1-202 - 691 1.3e-10 40.8 52.5 2 9 0.056 50 3.8 0.1 7 28 359 380 357 381 0.91 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 GZF1-202 - 691 1.3e-10 40.8 52.5 3 9 0.023 20 5.0 1.6 5 23 387 405 386 408 0.93 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 GZF1-202 - 691 1.3e-10 40.8 52.5 4 9 1.6e-05 0.015 15.1 0.2 7 26 417 436 415 437 0.96 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 GZF1-202 - 691 1.3e-10 40.8 52.5 5 9 0.006 5.4 6.9 0.2 7 23 445 461 443 463 0.80 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 GZF1-202 - 691 1.3e-10 40.8 52.5 6 9 0.0011 1 9.2 0.3 7 26 473 492 470 493 0.93 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 GZF1-202 - 691 1.3e-10 40.8 52.5 7 9 0.23 2.1e+02 1.8 0.3 5 24 499 518 496 521 0.87 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 GZF1-202 - 691 1.3e-10 40.8 52.5 8 9 0.00016 0.14 11.9 2.0 7 26 529 548 527 549 0.95 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 GZF1-202 - 691 1.3e-10 40.8 52.5 9 9 0.00015 0.14 12.0 0.3 7 24 557 574 554 577 0.92 zinc-finger C2H2-type zf-C2H2_6 PF13912.6 27 GZF1-202 - 691 1.7e-10 40.6 76.2 1 10 0.0044 3.9 7.6 4.3 2 24 297 320 296 321 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 GZF1-202 - 691 1.7e-10 40.6 76.2 2 10 0.0037 3.3 7.8 3.2 1 26 327 352 327 354 0.84 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 GZF1-202 - 691 1.7e-10 40.6 76.2 3 10 0.1 91 3.2 1.1 1 12 356 367 356 370 0.91 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 GZF1-202 - 691 1.7e-10 40.6 76.2 4 10 0.00014 0.13 12.3 1.7 1 24 386 409 386 411 0.96 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 GZF1-202 - 691 1.7e-10 40.6 76.2 5 10 4.4e-05 0.039 13.9 0.2 2 24 415 437 415 440 0.92 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 GZF1-202 - 691 1.7e-10 40.6 76.2 6 10 0.00013 0.11 12.5 1.9 2 24 443 465 443 468 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 GZF1-202 - 691 1.7e-10 40.6 76.2 7 10 0.014 12 6.0 1.0 3 13 472 482 471 493 0.81 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 GZF1-202 - 691 1.7e-10 40.6 76.2 8 10 0.53 4.7e+02 0.9 0.8 2 12 499 509 499 521 0.79 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 GZF1-202 - 691 1.7e-10 40.6 76.2 9 10 5.4e-07 0.00049 20.0 1.5 2 24 527 549 527 552 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 GZF1-202 - 691 1.7e-10 40.6 76.2 10 10 0.46 4.2e+02 1.1 0.1 3 12 556 565 555 577 0.87 C2H2-type zinc finger zf-C2H2_jaz PF12171.8 27 GZF1-202 - 691 1.2e-08 35.0 43.7 1 10 0.029 26 5.2 2.1 2 20 297 315 296 317 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 GZF1-202 - 691 1.2e-08 35.0 43.7 2 10 1.2 1.1e+03 0.1 0.7 2 21 328 347 327 348 0.87 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 GZF1-202 - 691 1.2e-08 35.0 43.7 3 10 0.00027 0.24 11.7 0.4 2 21 357 376 356 377 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 GZF1-202 - 691 1.2e-08 35.0 43.7 4 10 0.014 12 6.3 0.0 2 24 387 409 386 409 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 GZF1-202 - 691 1.2e-08 35.0 43.7 5 10 0.029 26 5.3 0.0 4 22 417 435 415 435 0.96 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 GZF1-202 - 691 1.2e-08 35.0 43.7 6 10 3.3 3e+03 -1.3 0.2 2 14 443 455 442 463 0.69 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 GZF1-202 - 691 1.2e-08 35.0 43.7 7 10 0.0012 1.1 9.6 0.4 2 20 471 489 470 491 0.89 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 GZF1-202 - 691 1.2e-08 35.0 43.7 8 10 0.033 30 5.1 0.6 2 22 499 519 498 519 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 GZF1-202 - 691 1.2e-08 35.0 43.7 9 10 0.035 32 5.0 0.5 4 21 529 546 526 547 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 GZF1-202 - 691 1.2e-08 35.0 43.7 10 10 0.0004 0.36 11.2 0.0 2 21 555 574 554 575 0.93 Zinc-finger double-stranded RNA-binding zf-met PF12874.7 25 GZF1-202 - 691 1.7e-08 34.6 59.5 1 10 0.04 36 4.9 1.9 1 19 297 315 297 318 0.92 Zinc-finger of C2H2 type zf-met PF12874.7 25 GZF1-202 - 691 1.7e-08 34.6 59.5 2 10 0.0013 1.2 9.6 1.9 1 21 328 348 328 349 0.93 Zinc-finger of C2H2 type zf-met PF12874.7 25 GZF1-202 - 691 1.7e-08 34.6 59.5 3 10 0.00035 0.31 11.5 0.0 3 19 359 375 357 376 0.93 Zinc-finger of C2H2 type zf-met PF12874.7 25 GZF1-202 - 691 1.7e-08 34.6 59.5 4 10 0.33 3e+02 2.0 0.3 3 21 389 407 387 410 0.85 Zinc-finger of C2H2 type zf-met PF12874.7 25 GZF1-202 - 691 1.7e-08 34.6 59.5 5 10 0.0024 2.1 8.8 0.1 3 22 417 436 415 438 0.90 Zinc-finger of C2H2 type zf-met PF12874.7 25 GZF1-202 - 691 1.7e-08 34.6 59.5 6 10 1.5 1.4e+03 -0.1 0.2 1 17 443 459 443 463 0.76 Zinc-finger of C2H2 type zf-met PF12874.7 25 GZF1-202 - 691 1.7e-08 34.6 59.5 7 10 0.00082 0.73 10.3 1.0 1 20 471 490 471 494 0.88 Zinc-finger of C2H2 type zf-met PF12874.7 25 GZF1-202 - 691 1.7e-08 34.6 59.5 8 10 0.014 13 6.4 1.0 1 21 499 519 499 521 0.90 Zinc-finger of C2H2 type zf-met PF12874.7 25 GZF1-202 - 691 1.7e-08 34.6 59.5 9 10 0.21 1.9e+02 2.7 1.2 1 20 527 546 527 550 0.87 Zinc-finger of C2H2 type zf-met PF12874.7 25 GZF1-202 - 691 1.7e-08 34.6 59.5 10 10 3.7e-05 0.033 14.6 0.1 1 20 555 574 555 576 0.94 Zinc-finger of C2H2 type # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/GZF1-202.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/GZF1-202.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/GZF1-202.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/GZF1-202.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/GZF1-202.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:54:23 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/GZF1-203.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/GZF1-203.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/GZF1-203.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/GZF1-203.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/GZF1-203.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:54:24 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/GZF1-204.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/GZF1-204.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/GZF1-204.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/GZF1-204.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/GZF1-204.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:54:24 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/GZF1-205.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/GZF1-205.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/GZF1-205.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/GZF1-205.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/GZF1-205.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:54:24 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- BTB PF00651.31 111 HIC1-201 - 714 7.5e-23 80.9 0.0 1 1 1.6e-25 1.1e-22 80.3 0.0 1 110 18 133 18 134 0.95 BTB/POZ domain zf-C2H2 PF00096.26 23 HIC1-201 - 714 4.3e-22 77.3 31.0 1 5 0.0013 0.91 10.1 0.0 6 23 423 440 418 440 0.90 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 HIC1-201 - 714 4.3e-22 77.3 31.0 2 5 1.5e-06 0.001 19.4 0.8 1 23 488 510 488 510 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 HIC1-201 - 714 4.3e-22 77.3 31.0 3 5 1.6e-08 1.2e-05 25.5 1.7 1 23 516 538 516 538 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 HIC1-201 - 714 4.3e-22 77.3 31.0 4 5 3.6e-07 0.00026 21.3 0.6 1 23 544 566 544 566 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 HIC1-201 - 714 4.3e-22 77.3 31.0 5 5 4.3e-07 0.00031 21.0 0.2 1 23 572 594 572 594 0.98 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 HIC1-201 - 714 1.7e-20 71.9 25.9 1 5 2.8e-05 0.02 15.7 0.0 1 23 418 440 418 441 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 HIC1-201 - 714 1.7e-20 71.9 25.9 2 5 1.2e-05 0.0087 16.8 0.5 1 23 488 510 488 511 0.97 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 HIC1-201 - 714 1.7e-20 71.9 25.9 3 5 3.6e-07 0.00026 21.6 0.6 1 23 516 538 516 539 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 HIC1-201 - 714 1.7e-20 71.9 25.9 4 5 2.6e-05 0.019 15.8 0.3 1 23 544 566 544 567 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 HIC1-201 - 714 1.7e-20 71.9 25.9 5 5 3.6e-06 0.0026 18.5 0.1 1 23 572 594 572 595 0.97 C2H2-type zinc finger zf-H2C2_2 PF13465.6 26 HIC1-201 - 714 1.4e-18 66.4 24.1 1 6 0.11 82 3.9 0.1 11 24 414 427 404 429 0.88 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 HIC1-201 - 714 1.4e-18 66.4 24.1 2 6 0.0068 4.8 7.8 0.2 13 25 486 498 483 499 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 HIC1-201 - 714 1.4e-18 66.4 24.1 3 6 0.00032 0.23 12.0 1.1 2 25 503 526 502 527 0.90 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 HIC1-201 - 714 1.4e-18 66.4 24.1 4 6 2e-08 1.5e-05 25.2 0.1 3 26 532 555 531 555 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 HIC1-201 - 714 1.4e-18 66.4 24.1 5 6 3.9e-10 2.8e-07 30.7 0.1 2 25 559 582 558 583 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 HIC1-201 - 714 1.4e-18 66.4 24.1 6 6 2.5 1.8e+03 -0.3 0.2 1 9 586 594 586 596 0.88 Zinc-finger double domain zf-C2H2_jaz PF12171.8 27 HIC1-201 - 714 1.1e-14 54.2 1.7 1 5 0.00022 0.16 12.3 0.0 2 21 418 437 417 438 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 HIC1-201 - 714 1.1e-14 54.2 1.7 2 5 1.2e-06 0.00087 19.5 0.1 2 24 488 510 487 511 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 HIC1-201 - 714 1.1e-14 54.2 1.7 3 5 0.0025 1.8 8.9 0.0 2 24 516 538 515 539 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 HIC1-201 - 714 1.1e-14 54.2 1.7 4 5 0.032 23 5.4 0.0 2 22 544 564 543 564 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 HIC1-201 - 714 1.1e-14 54.2 1.7 5 5 0.28 2e+02 2.4 0.0 2 22 572 592 571 592 0.88 Zinc-finger double-stranded RNA-binding zf-C2H2_6 PF13912.6 27 HIC1-201 - 714 9.2e-11 41.5 18.2 1 5 0.034 25 5.0 0.0 2 20 418 436 417 443 0.85 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 HIC1-201 - 714 9.2e-11 41.5 18.2 2 5 0.0075 5.4 7.1 0.4 2 25 488 511 488 511 0.92 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 HIC1-201 - 714 9.2e-11 41.5 18.2 3 5 0.0017 1.2 9.2 0.3 2 24 516 538 516 540 0.89 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 HIC1-201 - 714 9.2e-11 41.5 18.2 4 5 6e-05 0.043 13.8 0.1 2 25 544 567 544 569 0.92 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 HIC1-201 - 714 9.2e-11 41.5 18.2 5 5 2.4e-05 0.017 15.1 0.4 2 24 572 594 572 595 0.97 C2H2-type zinc finger zf-met PF12874.7 25 HIC1-201 - 714 8.4e-10 38.7 14.2 1 5 0.019 14 6.3 0.0 1 20 418 437 418 441 0.89 Zinc-finger of C2H2 type zf-met PF12874.7 25 HIC1-201 - 714 8.4e-10 38.7 14.2 2 5 3.8e-05 0.027 14.9 0.3 1 21 488 508 488 510 0.93 Zinc-finger of C2H2 type zf-met PF12874.7 25 HIC1-201 - 714 8.4e-10 38.7 14.2 3 5 6.7e-05 0.048 14.1 0.1 3 23 518 538 516 539 0.94 Zinc-finger of C2H2 type zf-met PF12874.7 25 HIC1-201 - 714 8.4e-10 38.7 14.2 4 5 0.022 16 6.1 0.1 1 21 544 564 544 566 0.86 Zinc-finger of C2H2 type zf-met PF12874.7 25 HIC1-201 - 714 8.4e-10 38.7 14.2 5 5 0.19 1.3e+02 3.1 0.1 1 21 572 592 572 592 0.91 Zinc-finger of C2H2 type # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/HIC1-201.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/HIC1-201.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/HIC1-201.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/HIC1-201.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/HIC1-201.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:54:25 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- BTB PF00651.31 111 HIC1-202 - 714 7.5e-23 80.9 0.0 1 1 1.6e-25 1.1e-22 80.3 0.0 1 110 18 133 18 134 0.95 BTB/POZ domain zf-C2H2 PF00096.26 23 HIC1-202 - 714 4.3e-22 77.3 31.0 1 5 0.0013 0.91 10.1 0.0 6 23 423 440 418 440 0.90 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 HIC1-202 - 714 4.3e-22 77.3 31.0 2 5 1.5e-06 0.001 19.4 0.8 1 23 488 510 488 510 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 HIC1-202 - 714 4.3e-22 77.3 31.0 3 5 1.6e-08 1.2e-05 25.5 1.7 1 23 516 538 516 538 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 HIC1-202 - 714 4.3e-22 77.3 31.0 4 5 3.6e-07 0.00026 21.3 0.6 1 23 544 566 544 566 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 HIC1-202 - 714 4.3e-22 77.3 31.0 5 5 4.3e-07 0.00031 21.0 0.2 1 23 572 594 572 594 0.98 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 HIC1-202 - 714 1.7e-20 71.9 25.9 1 5 2.8e-05 0.02 15.7 0.0 1 23 418 440 418 441 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 HIC1-202 - 714 1.7e-20 71.9 25.9 2 5 1.2e-05 0.0087 16.8 0.5 1 23 488 510 488 511 0.97 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 HIC1-202 - 714 1.7e-20 71.9 25.9 3 5 3.6e-07 0.00026 21.6 0.6 1 23 516 538 516 539 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 HIC1-202 - 714 1.7e-20 71.9 25.9 4 5 2.6e-05 0.019 15.8 0.3 1 23 544 566 544 567 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 HIC1-202 - 714 1.7e-20 71.9 25.9 5 5 3.6e-06 0.0026 18.5 0.1 1 23 572 594 572 595 0.97 C2H2-type zinc finger zf-H2C2_2 PF13465.6 26 HIC1-202 - 714 1.4e-18 66.4 24.1 1 6 0.11 82 3.9 0.1 11 24 414 427 404 429 0.88 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 HIC1-202 - 714 1.4e-18 66.4 24.1 2 6 0.0068 4.8 7.8 0.2 13 25 486 498 483 499 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 HIC1-202 - 714 1.4e-18 66.4 24.1 3 6 0.00032 0.23 12.0 1.1 2 25 503 526 502 527 0.90 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 HIC1-202 - 714 1.4e-18 66.4 24.1 4 6 2e-08 1.5e-05 25.2 0.1 3 26 532 555 531 555 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 HIC1-202 - 714 1.4e-18 66.4 24.1 5 6 3.9e-10 2.8e-07 30.7 0.1 2 25 559 582 558 583 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 HIC1-202 - 714 1.4e-18 66.4 24.1 6 6 2.5 1.8e+03 -0.3 0.2 1 9 586 594 586 596 0.88 Zinc-finger double domain zf-C2H2_jaz PF12171.8 27 HIC1-202 - 714 1.1e-14 54.2 1.7 1 5 0.00022 0.16 12.3 0.0 2 21 418 437 417 438 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 HIC1-202 - 714 1.1e-14 54.2 1.7 2 5 1.2e-06 0.00087 19.5 0.1 2 24 488 510 487 511 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 HIC1-202 - 714 1.1e-14 54.2 1.7 3 5 0.0025 1.8 8.9 0.0 2 24 516 538 515 539 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 HIC1-202 - 714 1.1e-14 54.2 1.7 4 5 0.032 23 5.4 0.0 2 22 544 564 543 564 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 HIC1-202 - 714 1.1e-14 54.2 1.7 5 5 0.28 2e+02 2.4 0.0 2 22 572 592 571 592 0.88 Zinc-finger double-stranded RNA-binding zf-C2H2_6 PF13912.6 27 HIC1-202 - 714 9.2e-11 41.5 18.2 1 5 0.034 25 5.0 0.0 2 20 418 436 417 443 0.85 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 HIC1-202 - 714 9.2e-11 41.5 18.2 2 5 0.0075 5.4 7.1 0.4 2 25 488 511 488 511 0.92 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 HIC1-202 - 714 9.2e-11 41.5 18.2 3 5 0.0017 1.2 9.2 0.3 2 24 516 538 516 540 0.89 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 HIC1-202 - 714 9.2e-11 41.5 18.2 4 5 6e-05 0.043 13.8 0.1 2 25 544 567 544 569 0.92 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 HIC1-202 - 714 9.2e-11 41.5 18.2 5 5 2.4e-05 0.017 15.1 0.4 2 24 572 594 572 595 0.97 C2H2-type zinc finger zf-met PF12874.7 25 HIC1-202 - 714 8.4e-10 38.7 14.2 1 5 0.019 14 6.3 0.0 1 20 418 437 418 441 0.89 Zinc-finger of C2H2 type zf-met PF12874.7 25 HIC1-202 - 714 8.4e-10 38.7 14.2 2 5 3.8e-05 0.027 14.9 0.3 1 21 488 508 488 510 0.93 Zinc-finger of C2H2 type zf-met PF12874.7 25 HIC1-202 - 714 8.4e-10 38.7 14.2 3 5 6.7e-05 0.048 14.1 0.1 3 23 518 538 516 539 0.94 Zinc-finger of C2H2 type zf-met PF12874.7 25 HIC1-202 - 714 8.4e-10 38.7 14.2 4 5 0.022 16 6.1 0.1 1 21 544 564 544 566 0.86 Zinc-finger of C2H2 type zf-met PF12874.7 25 HIC1-202 - 714 8.4e-10 38.7 14.2 5 5 0.19 1.3e+02 3.1 0.1 1 21 572 592 572 592 0.91 Zinc-finger of C2H2 type # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/HIC1-202.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/HIC1-202.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/HIC1-202.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/HIC1-202.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/HIC1-202.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:54:25 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/HIC1-203.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/HIC1-203.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/HIC1-203.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/HIC1-203.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/HIC1-203.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:54:25 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/HIC1-204.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/HIC1-204.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/HIC1-204.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/HIC1-204.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/HIC1-204.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:54:26 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/HIC1-205.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/HIC1-205.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/HIC1-205.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/HIC1-205.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/HIC1-205.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:54:26 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/HIC1-206.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/HIC1-206.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/HIC1-206.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/HIC1-206.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/HIC1-206.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:54:27 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- BTB PF00651.31 111 HIC1-207 - 714 7.5e-23 80.9 0.0 1 1 1.6e-25 1.1e-22 80.3 0.0 1 110 18 133 18 134 0.95 BTB/POZ domain zf-C2H2 PF00096.26 23 HIC1-207 - 714 4.3e-22 77.3 31.0 1 5 0.0013 0.91 10.1 0.0 6 23 423 440 418 440 0.90 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 HIC1-207 - 714 4.3e-22 77.3 31.0 2 5 1.5e-06 0.001 19.4 0.8 1 23 488 510 488 510 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 HIC1-207 - 714 4.3e-22 77.3 31.0 3 5 1.6e-08 1.2e-05 25.5 1.7 1 23 516 538 516 538 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 HIC1-207 - 714 4.3e-22 77.3 31.0 4 5 3.6e-07 0.00026 21.3 0.6 1 23 544 566 544 566 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 HIC1-207 - 714 4.3e-22 77.3 31.0 5 5 4.3e-07 0.00031 21.0 0.2 1 23 572 594 572 594 0.98 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 HIC1-207 - 714 1.7e-20 71.9 25.9 1 5 2.8e-05 0.02 15.7 0.0 1 23 418 440 418 441 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 HIC1-207 - 714 1.7e-20 71.9 25.9 2 5 1.2e-05 0.0087 16.8 0.5 1 23 488 510 488 511 0.97 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 HIC1-207 - 714 1.7e-20 71.9 25.9 3 5 3.6e-07 0.00026 21.6 0.6 1 23 516 538 516 539 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 HIC1-207 - 714 1.7e-20 71.9 25.9 4 5 2.6e-05 0.019 15.8 0.3 1 23 544 566 544 567 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 HIC1-207 - 714 1.7e-20 71.9 25.9 5 5 3.6e-06 0.0026 18.5 0.1 1 23 572 594 572 595 0.97 C2H2-type zinc finger zf-H2C2_2 PF13465.6 26 HIC1-207 - 714 1.4e-18 66.4 24.1 1 6 0.11 82 3.9 0.1 11 24 414 427 404 429 0.88 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 HIC1-207 - 714 1.4e-18 66.4 24.1 2 6 0.0068 4.8 7.8 0.2 13 25 486 498 483 499 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 HIC1-207 - 714 1.4e-18 66.4 24.1 3 6 0.00032 0.23 12.0 1.1 2 25 503 526 502 527 0.90 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 HIC1-207 - 714 1.4e-18 66.4 24.1 4 6 2e-08 1.5e-05 25.2 0.1 3 26 532 555 531 555 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 HIC1-207 - 714 1.4e-18 66.4 24.1 5 6 3.9e-10 2.8e-07 30.7 0.1 2 25 559 582 558 583 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 HIC1-207 - 714 1.4e-18 66.4 24.1 6 6 2.5 1.8e+03 -0.3 0.2 1 9 586 594 586 596 0.88 Zinc-finger double domain zf-C2H2_jaz PF12171.8 27 HIC1-207 - 714 1.1e-14 54.2 1.7 1 5 0.00022 0.16 12.3 0.0 2 21 418 437 417 438 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 HIC1-207 - 714 1.1e-14 54.2 1.7 2 5 1.2e-06 0.00087 19.5 0.1 2 24 488 510 487 511 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 HIC1-207 - 714 1.1e-14 54.2 1.7 3 5 0.0025 1.8 8.9 0.0 2 24 516 538 515 539 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 HIC1-207 - 714 1.1e-14 54.2 1.7 4 5 0.032 23 5.4 0.0 2 22 544 564 543 564 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 HIC1-207 - 714 1.1e-14 54.2 1.7 5 5 0.28 2e+02 2.4 0.0 2 22 572 592 571 592 0.88 Zinc-finger double-stranded RNA-binding zf-C2H2_6 PF13912.6 27 HIC1-207 - 714 9.2e-11 41.5 18.2 1 5 0.034 25 5.0 0.0 2 20 418 436 417 443 0.85 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 HIC1-207 - 714 9.2e-11 41.5 18.2 2 5 0.0075 5.4 7.1 0.4 2 25 488 511 488 511 0.92 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 HIC1-207 - 714 9.2e-11 41.5 18.2 3 5 0.0017 1.2 9.2 0.3 2 24 516 538 516 540 0.89 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 HIC1-207 - 714 9.2e-11 41.5 18.2 4 5 6e-05 0.043 13.8 0.1 2 25 544 567 544 569 0.92 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 HIC1-207 - 714 9.2e-11 41.5 18.2 5 5 2.4e-05 0.017 15.1 0.4 2 24 572 594 572 595 0.97 C2H2-type zinc finger zf-met PF12874.7 25 HIC1-207 - 714 8.4e-10 38.7 14.2 1 5 0.019 14 6.3 0.0 1 20 418 437 418 441 0.89 Zinc-finger of C2H2 type zf-met PF12874.7 25 HIC1-207 - 714 8.4e-10 38.7 14.2 2 5 3.8e-05 0.027 14.9 0.3 1 21 488 508 488 510 0.93 Zinc-finger of C2H2 type zf-met PF12874.7 25 HIC1-207 - 714 8.4e-10 38.7 14.2 3 5 6.7e-05 0.048 14.1 0.1 3 23 518 538 516 539 0.94 Zinc-finger of C2H2 type zf-met PF12874.7 25 HIC1-207 - 714 8.4e-10 38.7 14.2 4 5 0.022 16 6.1 0.1 1 21 544 564 544 566 0.86 Zinc-finger of C2H2 type zf-met PF12874.7 25 HIC1-207 - 714 8.4e-10 38.7 14.2 5 5 0.19 1.3e+02 3.1 0.1 1 21 572 592 572 592 0.91 Zinc-finger of C2H2 type # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/HIC1-207.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/HIC1-207.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/HIC1-207.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/HIC1-207.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/HIC1-207.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:54:27 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-C2H2_4 PF13894.6 24 HINFP-201 - 517 6.9e-16 57.6 81.0 1 10 0.57 9.2e+02 1.2 2.6 2 23 16 39 15 43 0.71 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 HINFP-201 - 517 6.9e-16 57.6 81.0 2 10 0.0075 12 7.0 0.3 2 23 70 89 69 89 0.91 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 HINFP-201 - 517 6.9e-16 57.6 81.0 3 10 0.0012 1.9 9.5 0.5 4 23 134 153 129 154 0.91 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 HINFP-201 - 517 6.9e-16 57.6 81.0 4 10 0.00057 0.92 10.5 1.9 6 23 176 193 170 194 0.88 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 HINFP-201 - 517 6.9e-16 57.6 81.0 5 10 0.00013 0.22 12.5 0.0 2 22 200 220 199 222 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 HINFP-201 - 517 6.9e-16 57.6 81.0 6 10 5.4e-08 8.8e-05 23.0 1.9 1 23 229 251 229 252 0.97 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 HINFP-201 - 517 6.9e-16 57.6 81.0 7 10 2.2e-05 0.036 14.9 2.1 1 24 255 278 255 278 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 HINFP-201 - 517 6.9e-16 57.6 81.0 8 10 0.0027 4.4 8.4 4.0 1 23 284 306 284 307 0.80 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 HINFP-201 - 517 6.9e-16 57.6 81.0 9 10 0.12 1.9e+02 3.3 3.0 1 24 312 337 312 337 0.82 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 HINFP-201 - 517 6.9e-16 57.6 81.0 10 10 8.6e-05 0.14 13.1 4.8 1 24 345 368 345 368 0.96 C2H2-type zinc finger zf-C2H2 PF00096.26 23 HINFP-201 - 517 2.2e-15 56.1 88.3 1 10 0.61 1e+03 0.5 1.8 2 23 16 39 15 43 0.81 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 HINFP-201 - 517 2.2e-15 56.1 88.3 2 10 0.22 3.5e+02 2.0 0.7 1 23 64 89 64 89 0.84 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 HINFP-201 - 517 2.2e-15 56.1 88.3 3 10 0.11 1.7e+02 2.9 0.2 3 23 131 153 129 153 0.84 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 HINFP-201 - 517 2.2e-15 56.1 88.3 4 10 1.7e-05 0.027 14.9 2.4 3 23 171 193 170 193 0.93 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 HINFP-201 - 517 2.2e-15 56.1 88.3 5 10 0.0009 1.5 9.5 0.1 3 22 201 220 200 220 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 HINFP-201 - 517 2.2e-15 56.1 88.3 6 10 2.6e-07 0.00042 20.6 3.8 1 23 229 251 229 251 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 HINFP-201 - 517 2.2e-15 56.1 88.3 7 10 8.2e-07 0.0013 19.0 2.7 1 23 255 278 255 278 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 HINFP-201 - 517 2.2e-15 56.1 88.3 8 10 0.004 6.5 7.4 5.0 1 23 284 306 284 306 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 HINFP-201 - 517 2.2e-15 56.1 88.3 9 10 0.035 57 4.5 3.6 1 23 312 337 312 337 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 HINFP-201 - 517 2.2e-15 56.1 88.3 10 10 5.7e-08 9.3e-05 22.7 5.8 1 23 345 368 345 368 0.98 Zinc finger, C2H2 type zf-H2C2_2 PF13465.6 26 HINFP-201 - 517 1.4e-12 47.4 64.6 1 8 3.6 5.8e+03 -2.0 0.2 2 9 82 89 81 89 0.87 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 HINFP-201 - 517 1.4e-12 47.4 64.6 2 8 2.6e-08 4.2e-05 23.8 0.1 2 26 186 210 185 210 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 HINFP-201 - 517 1.4e-12 47.4 64.6 3 8 6.8e-05 0.11 13.0 0.7 5 26 217 240 214 240 0.89 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 HINFP-201 - 517 1.4e-12 47.4 64.6 4 8 0.00028 0.45 11.0 3.7 2 22 244 262 244 264 0.87 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 HINFP-201 - 517 1.4e-12 47.4 64.6 5 8 1e-05 0.017 15.6 5.5 1 26 269 295 269 295 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 HINFP-201 - 517 1.4e-12 47.4 64.6 6 8 0.014 23 5.6 0.1 1 20 298 319 298 324 0.79 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 HINFP-201 - 517 1.4e-12 47.4 64.6 7 8 2.4e-05 0.039 14.4 4.7 3 26 330 356 328 356 0.86 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 HINFP-201 - 517 1.4e-12 47.4 64.6 8 8 0.61 1e+03 0.5 0.2 1 9 359 368 359 377 0.82 Zinc-finger double domain # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/HINFP-201.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/HINFP-201.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/HINFP-201.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/HINFP-201.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/HINFP-201.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:54:27 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/HINFP-202.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/HINFP-202.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/HINFP-202.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/HINFP-202.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/HINFP-202.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:54:28 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/HINFP-203.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/HINFP-203.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/HINFP-203.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/HINFP-203.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/HINFP-203.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:54:28 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-C2H2_4 PF13894.6 24 HINFP-204 - 419 4.6e-17 61.3 81.0 1 10 0.36 7.1e+02 1.5 2.6 2 23 16 39 15 43 0.71 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 HINFP-204 - 419 4.6e-17 61.3 81.0 2 10 0.0048 9.5 7.4 0.3 2 23 70 89 69 89 0.91 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 HINFP-204 - 419 4.6e-17 61.3 81.0 3 10 0.00074 1.5 9.9 0.5 4 23 134 153 129 154 0.91 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 HINFP-204 - 419 4.6e-17 61.3 81.0 4 10 0.00036 0.72 10.9 1.9 6 23 176 193 170 194 0.88 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 HINFP-204 - 419 4.6e-17 61.3 81.0 5 10 8.5e-05 0.17 12.8 0.0 2 22 200 220 199 222 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 HINFP-204 - 419 4.6e-17 61.3 81.0 6 10 3.4e-08 6.8e-05 23.4 1.9 1 23 229 251 229 252 0.97 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 HINFP-204 - 419 4.6e-17 61.3 81.0 7 10 1.4e-05 0.028 15.3 2.1 1 24 255 278 255 278 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 HINFP-204 - 419 4.6e-17 61.3 81.0 8 10 0.0017 3.4 8.8 4.0 1 23 284 306 284 307 0.80 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 HINFP-204 - 419 4.6e-17 61.3 81.0 9 10 0.074 1.5e+02 3.7 3.0 1 24 312 337 312 337 0.82 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 HINFP-204 - 419 4.6e-17 61.3 81.0 10 10 5.4e-05 0.11 13.4 4.8 1 24 345 368 345 368 0.96 C2H2-type zinc finger zf-C2H2 PF00096.26 23 HINFP-204 - 419 1.7e-16 59.6 88.3 1 10 0.39 7.7e+02 0.9 1.8 2 23 16 39 15 43 0.81 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 HINFP-204 - 419 1.7e-16 59.6 88.3 2 10 0.14 2.7e+02 2.3 0.7 1 23 64 89 64 89 0.84 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 HINFP-204 - 419 1.7e-16 59.6 88.3 3 10 0.067 1.3e+02 3.3 0.2 3 23 131 153 129 153 0.84 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 HINFP-204 - 419 1.7e-16 59.6 88.3 4 10 1.1e-05 0.021 15.3 2.4 3 23 171 193 170 193 0.93 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 HINFP-204 - 419 1.7e-16 59.6 88.3 5 10 0.00057 1.1 9.8 0.1 3 22 201 220 200 220 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 HINFP-204 - 419 1.7e-16 59.6 88.3 6 10 1.7e-07 0.00033 20.9 3.8 1 23 229 251 229 251 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 HINFP-204 - 419 1.7e-16 59.6 88.3 7 10 5.2e-07 0.001 19.4 2.7 1 23 255 278 255 278 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 HINFP-204 - 419 1.7e-16 59.6 88.3 8 10 0.0025 5 7.8 5.0 1 23 284 306 284 306 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 HINFP-204 - 419 1.7e-16 59.6 88.3 9 10 0.022 44 4.8 3.6 1 23 312 337 312 337 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 HINFP-204 - 419 1.7e-16 59.6 88.3 10 10 3.6e-08 7.2e-05 23.0 5.8 1 23 345 368 345 368 0.98 Zinc finger, C2H2 type zf-H2C2_2 PF13465.6 26 HINFP-204 - 419 1.2e-11 44.5 70.3 1 11 8.7 1.7e+04 -3.5 0.2 15 23 15 25 10 28 0.62 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 HINFP-204 - 419 1.2e-11 44.5 70.3 2 11 9 1.8e+04 -3.5 0.6 16 20 70 74 59 75 0.82 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 HINFP-204 - 419 1.2e-11 44.5 70.3 3 11 2.3 4.6e+03 -1.6 0.2 2 9 82 89 81 89 0.87 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 HINFP-204 - 419 1.2e-11 44.5 70.3 4 11 6.1 1.2e+04 -3.0 0.0 19 26 135 142 130 142 0.80 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 HINFP-204 - 419 1.2e-11 44.5 70.3 5 11 1.6e-08 3.2e-05 24.1 0.1 2 26 186 210 185 210 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 HINFP-204 - 419 1.2e-11 44.5 70.3 6 11 4.3e-05 0.086 13.3 0.7 5 26 217 240 214 240 0.89 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 HINFP-204 - 419 1.2e-11 44.5 70.3 7 11 0.00018 0.35 11.4 3.7 2 22 244 262 244 264 0.87 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 HINFP-204 - 419 1.2e-11 44.5 70.3 8 11 6.4e-06 0.013 15.9 5.5 1 26 269 295 269 295 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 HINFP-204 - 419 1.2e-11 44.5 70.3 9 11 0.0091 18 6.0 0.1 1 20 298 319 298 324 0.79 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 HINFP-204 - 419 1.2e-11 44.5 70.3 10 11 1.5e-05 0.03 14.8 4.7 3 26 330 356 328 356 0.86 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 HINFP-204 - 419 1.2e-11 44.5 70.3 11 11 0.37 7.4e+02 0.9 0.1 1 9 359 368 359 375 0.81 Zinc-finger double domain # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/HINFP-204.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/HINFP-204.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/HINFP-204.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/HINFP-204.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/HINFP-204.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:54:29 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-C2H2 PF00096.26 23 HINFP-205 - 270 4.3e-10 39.5 40.6 1 4 4e-07 0.00059 20.1 2.7 1 23 8 31 8 31 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 HINFP-205 - 270 4.3e-10 39.5 40.6 2 4 0.0019 2.9 8.5 5.0 1 23 37 59 37 59 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 HINFP-205 - 270 4.3e-10 39.5 40.6 3 4 0.017 25 5.6 3.6 1 23 65 90 65 90 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 HINFP-205 - 270 4.3e-10 39.5 40.6 4 4 2.7e-08 4.1e-05 23.8 5.8 1 23 98 121 98 121 0.98 Zinc finger, C2H2 type # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/HINFP-205.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/HINFP-205.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/HINFP-205.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/HINFP-205.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/HINFP-205.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:54:29 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/HINFP-206.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/HINFP-206.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/HINFP-206.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/HINFP-206.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/HINFP-206.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:54:29 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/HINFP-207.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/HINFP-207.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/HINFP-207.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/HINFP-207.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/HINFP-207.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:54:30 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/HINFP-208.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/HINFP-208.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/HINFP-208.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/HINFP-208.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/HINFP-208.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:54:30 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/HINFP-209.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/HINFP-209.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/HINFP-209.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/HINFP-209.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/HINFP-209.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:54:30 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/HINFP-210.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/HINFP-210.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/HINFP-210.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/HINFP-210.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/HINFP-210.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:54:31 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/HINFP-211.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/HINFP-211.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/HINFP-211.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/HINFP-211.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/HINFP-211.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:54:31 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/HINFP-212.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/HINFP-212.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/HINFP-212.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/HINFP-212.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/HINFP-212.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:54:31 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/HINFP-213.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/HINFP-213.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/HINFP-213.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/HINFP-213.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/HINFP-213.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:54:32 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/HINFP-214.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/HINFP-214.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/HINFP-214.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/HINFP-214.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/HINFP-214.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:54:32 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-C2H2 PF00096.26 23 HIVEP1-201 - 2718 3.5e-17 61.8 40.8 1 5 5e-06 0.013 15.9 0.9 1 23 406 428 406 428 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 HIVEP1-201 - 2718 3.5e-17 61.8 40.8 2 5 1.6e-07 0.00041 20.7 2.9 1 23 434 456 434 456 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 HIVEP1-201 - 2718 3.5e-17 61.8 40.8 3 5 0.04 1e+02 3.7 1.4 1 20 959 978 959 980 0.94 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 HIVEP1-201 - 2718 3.5e-17 61.8 40.8 4 5 6.6e-08 0.00017 21.9 1.6 1 23 2088 2110 2088 2110 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 HIVEP1-201 - 2718 3.5e-17 61.8 40.8 5 5 1e-07 0.00026 21.3 4.7 1 23 2116 2140 2116 2140 0.92 Zinc finger, C2H2 type zf-H2C2_2 PF13465.6 26 HIVEP1-201 - 2718 1.4e-08 34.8 11.8 1 6 3 7.6e+03 -2.3 1.5 11 24 400 415 395 417 0.68 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 HIVEP1-201 - 2718 1.4e-08 34.8 11.8 2 6 2.2e-09 5.7e-06 26.5 0.8 2 26 421 445 421 445 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 HIVEP1-201 - 2718 1.4e-08 34.8 11.8 3 6 4.7 1.2e+04 -3.0 0.5 1 9 448 456 448 457 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 HIVEP1-201 - 2718 1.4e-08 34.8 11.8 4 6 0.075 1.9e+02 2.7 1.1 7 24 950 968 945 970 0.74 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 HIVEP1-201 - 2718 1.4e-08 34.8 11.8 5 6 2e-08 5.2e-05 23.5 4.4 2 26 2103 2127 2102 2127 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 HIVEP1-201 - 2718 1.4e-08 34.8 11.8 6 6 1 2.7e+03 -0.9 0.5 1 10 2130 2141 2130 2143 0.77 Zinc-finger double domain zf-C2H2_4 PF13894.6 24 HIVEP1-201 - 2718 7.7e-08 32.6 35.1 1 5 0.00024 0.62 11.0 1.0 1 23 406 428 406 429 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 HIVEP1-201 - 2718 7.7e-08 32.6 35.1 2 5 0.00012 0.31 12.0 1.7 1 23 434 456 434 457 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 HIVEP1-201 - 2718 7.7e-08 32.6 35.1 3 5 0.16 4.2e+02 2.2 1.0 1 21 959 979 959 980 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 HIVEP1-201 - 2718 7.7e-08 32.6 35.1 4 5 0.00013 0.34 11.9 1.2 1 23 2088 2110 2088 2111 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 HIVEP1-201 - 2718 7.7e-08 32.6 35.1 5 5 9e-06 0.023 15.5 2.0 1 22 2116 2137 2116 2139 0.94 C2H2-type zinc finger # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/HIVEP1-201.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/HIVEP1-201.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/HIVEP1-201.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/HIVEP1-201.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/HIVEP1-201.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:54:33 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/HIVEP1-202.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/HIVEP1-202.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/HIVEP1-202.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/HIVEP1-202.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/HIVEP1-202.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:54:33 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/HIVEP1-203.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/HIVEP1-203.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/HIVEP1-203.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/HIVEP1-203.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/HIVEP1-203.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:54:33 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/HIVEP1-204.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/HIVEP1-204.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/HIVEP1-204.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/HIVEP1-204.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/HIVEP1-204.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:54:34 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/HIVEP1-205.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/HIVEP1-205.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/HIVEP1-205.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/HIVEP1-205.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/HIVEP1-205.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:54:34 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/HIVEP1-206.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/HIVEP1-206.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/HIVEP1-206.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/HIVEP1-206.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/HIVEP1-206.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:54:34 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/HIVEP1-207.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/HIVEP1-207.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/HIVEP1-207.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/HIVEP1-207.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/HIVEP1-207.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:54:35 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-C2H2 PF00096.26 23 HIVEP1-208 - 2717 3.5e-17 61.8 40.8 1 5 5e-06 0.013 15.9 0.9 1 23 406 428 406 428 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 HIVEP1-208 - 2717 3.5e-17 61.8 40.8 2 5 1.6e-07 0.00041 20.7 2.9 1 23 434 456 434 456 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 HIVEP1-208 - 2717 3.5e-17 61.8 40.8 3 5 0.04 1e+02 3.7 1.4 1 20 959 978 959 980 0.94 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 HIVEP1-208 - 2717 3.5e-17 61.8 40.8 4 5 6.6e-08 0.00017 21.9 1.6 1 23 2087 2109 2087 2109 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 HIVEP1-208 - 2717 3.5e-17 61.8 40.8 5 5 1e-07 0.00026 21.3 4.7 1 23 2115 2139 2115 2139 0.92 Zinc finger, C2H2 type zf-H2C2_2 PF13465.6 26 HIVEP1-208 - 2717 1.4e-08 34.8 11.8 1 6 3 7.6e+03 -2.3 1.5 11 24 400 415 395 417 0.68 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 HIVEP1-208 - 2717 1.4e-08 34.8 11.8 2 6 2.2e-09 5.7e-06 26.5 0.8 2 26 421 445 421 445 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 HIVEP1-208 - 2717 1.4e-08 34.8 11.8 3 6 4.7 1.2e+04 -3.0 0.5 1 9 448 456 448 457 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 HIVEP1-208 - 2717 1.4e-08 34.8 11.8 4 6 0.075 1.9e+02 2.7 1.1 7 24 950 968 945 970 0.74 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 HIVEP1-208 - 2717 1.4e-08 34.8 11.8 5 6 2e-08 5.2e-05 23.5 4.4 2 26 2102 2126 2101 2126 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 HIVEP1-208 - 2717 1.4e-08 34.8 11.8 6 6 1 2.7e+03 -0.9 0.5 1 10 2129 2140 2129 2142 0.77 Zinc-finger double domain zf-C2H2_4 PF13894.6 24 HIVEP1-208 - 2717 7.7e-08 32.6 35.1 1 5 0.00024 0.62 11.0 1.0 1 23 406 428 406 429 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 HIVEP1-208 - 2717 7.7e-08 32.6 35.1 2 5 0.00012 0.31 12.0 1.7 1 23 434 456 434 457 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 HIVEP1-208 - 2717 7.7e-08 32.6 35.1 3 5 0.16 4.2e+02 2.2 1.0 1 21 959 979 959 980 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 HIVEP1-208 - 2717 7.7e-08 32.6 35.1 4 5 0.00013 0.34 11.9 1.2 1 23 2087 2109 2087 2110 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 HIVEP1-208 - 2717 7.7e-08 32.6 35.1 5 5 8.9e-06 0.023 15.5 2.0 1 22 2115 2136 2115 2138 0.94 C2H2-type zinc finger # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/HIVEP1-208.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/HIVEP1-208.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/HIVEP1-208.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/HIVEP1-208.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/HIVEP1-208.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:54:35 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-C2H2 PF00096.26 23 HIVEP1-209 - 2684 9.5e-13 47.8 38.2 1 5 2.8e-06 0.013 16.0 0.9 1 23 406 428 406 428 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 HIVEP1-209 - 2684 9.5e-13 47.8 38.2 2 5 9e-08 0.0004 20.7 2.9 1 23 434 456 434 456 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 HIVEP1-209 - 2684 9.5e-13 47.8 38.2 3 5 0.022 1e+02 3.7 1.4 1 20 959 978 959 980 0.94 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 HIVEP1-209 - 2684 9.5e-13 47.8 38.2 4 5 3.7e-08 0.00017 21.9 1.6 1 23 2088 2110 2088 2110 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 HIVEP1-209 - 2684 9.5e-13 47.8 38.2 5 5 0.002 8.8 7.0 2.4 1 15 2116 2130 2116 2133 0.89 Zinc finger, C2H2 type zf-H2C2_2 PF13465.6 26 HIVEP1-209 - 2684 1.3e-08 34.8 11.8 1 5 1.7 7.5e+03 -2.3 1.5 11 24 400 415 395 417 0.68 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 HIVEP1-209 - 2684 1.3e-08 34.8 11.8 2 5 1.3e-09 5.7e-06 26.5 0.8 2 26 421 445 421 445 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 HIVEP1-209 - 2684 1.3e-08 34.8 11.8 3 5 2.6 1.2e+04 -2.9 0.5 1 9 448 456 448 457 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 HIVEP1-209 - 2684 1.3e-08 34.8 11.8 4 5 0.042 1.9e+02 2.7 1.1 7 24 950 968 945 970 0.74 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 HIVEP1-209 - 2684 1.3e-08 34.8 11.8 5 5 1.1e-08 5.1e-05 23.5 4.4 2 26 2103 2127 2102 2127 0.96 Zinc-finger double domain # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/HIVEP1-209.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/HIVEP1-209.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/HIVEP1-209.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/HIVEP1-209.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/HIVEP1-209.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:54:36 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-C2H2 PF00096.26 23 HKR1-201 - 659 2.7e-72 235.4 110.6 1 14 0.47 3.2e+02 2.1 0.0 6 19 116 129 114 130 0.91 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 HKR1-201 - 659 2.7e-72 235.4 110.6 2 14 2.9e-07 0.0002 21.6 0.5 1 23 301 323 301 323 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 HKR1-201 - 659 2.7e-72 235.4 110.6 3 14 8.2e-08 5.6e-05 23.4 1.1 1 23 329 351 329 351 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 HKR1-201 - 659 2.7e-72 235.4 110.6 4 14 3.9e-08 2.7e-05 24.4 0.4 1 23 357 379 357 379 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 HKR1-201 - 659 2.7e-72 235.4 110.6 5 14 1.7e-07 0.00012 22.4 5.0 1 23 385 407 385 407 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 HKR1-201 - 659 2.7e-72 235.4 110.6 6 14 1.4e-07 9.6e-05 22.6 1.9 1 23 413 435 413 435 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 HKR1-201 - 659 2.7e-72 235.4 110.6 7 14 2.8e-07 0.00019 21.7 3.1 1 23 441 463 441 463 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 HKR1-201 - 659 2.7e-72 235.4 110.6 8 14 1.4e-07 9.6e-05 22.6 2.6 1 23 469 491 469 491 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 HKR1-201 - 659 2.7e-72 235.4 110.6 9 14 1e-08 7.2e-06 26.2 1.5 1 23 497 519 497 519 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 HKR1-201 - 659 2.7e-72 235.4 110.6 10 14 2.2e-08 1.5e-05 25.1 0.2 1 23 525 547 525 547 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 HKR1-201 - 659 2.7e-72 235.4 110.6 11 14 1.5e-06 0.001 19.4 2.4 1 23 553 575 553 575 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 HKR1-201 - 659 2.7e-72 235.4 110.6 12 14 2.1e-05 0.015 15.7 0.8 1 23 579 601 579 601 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 HKR1-201 - 659 2.7e-72 235.4 110.6 13 14 1.6e-08 1.1e-05 25.6 3.6 1 23 607 629 607 629 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 HKR1-201 - 659 2.7e-72 235.4 110.6 14 14 2.1e-09 1.4e-06 28.4 1.7 1 23 635 657 635 657 0.98 Zinc finger, C2H2 type zf-H2C2_2 PF13465.6 26 HKR1-201 - 659 2.6e-64 211.0 99.0 1 15 3.2 2.2e+03 -0.6 0.0 7 15 265 273 264 276 0.84 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 HKR1-201 - 659 2.6e-64 211.0 99.0 2 15 0.00028 0.19 12.2 0.3 7 25 293 311 293 311 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 HKR1-201 - 659 2.6e-64 211.0 99.0 3 15 2.2e-08 1.5e-05 25.1 0.2 1 25 315 339 315 339 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 HKR1-201 - 659 2.6e-64 211.0 99.0 4 15 3.4e-07 0.00023 21.4 0.5 1 25 343 367 343 367 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 HKR1-201 - 659 2.6e-64 211.0 99.0 5 15 1.2e-07 8.3e-05 22.8 0.1 1 24 371 394 371 396 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 HKR1-201 - 659 2.6e-64 211.0 99.0 6 15 1.2e-07 8e-05 22.9 1.1 1 25 399 423 399 424 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 HKR1-201 - 659 2.6e-64 211.0 99.0 7 15 1.2e-09 8.6e-07 29.1 2.6 1 24 427 450 427 451 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 HKR1-201 - 659 2.6e-64 211.0 99.0 8 15 4.5e-07 0.00031 21.0 1.1 1 24 455 478 455 479 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 HKR1-201 - 659 2.6e-64 211.0 99.0 9 15 7e-11 4.8e-08 33.1 0.6 1 26 483 508 483 508 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 HKR1-201 - 659 2.6e-64 211.0 99.0 10 15 5.8e-08 4e-05 23.8 0.1 2 25 512 535 511 536 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 HKR1-201 - 659 2.6e-64 211.0 99.0 11 15 2.2e-07 0.00015 22.0 0.5 3 25 541 563 540 564 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 HKR1-201 - 659 2.6e-64 211.0 99.0 12 15 0.072 49 4.6 0.3 1 24 567 588 567 588 0.89 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 HKR1-201 - 659 2.6e-64 211.0 99.0 13 15 0.00018 0.12 12.8 0.2 2 25 594 617 593 618 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 HKR1-201 - 659 2.6e-64 211.0 99.0 14 15 1.2e-07 8.1e-05 22.9 1.2 1 25 621 645 621 646 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 HKR1-201 - 659 2.6e-64 211.0 99.0 15 15 0.21 1.5e+02 3.1 0.3 1 11 649 659 649 659 0.90 Zinc-finger double domain zf-C2H2_4 PF13894.6 24 HKR1-201 - 659 1.9e-46 152.7 106.0 1 14 0.011 7.7 7.6 0.1 4 24 114 134 113 134 0.89 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 HKR1-201 - 659 1.9e-46 152.7 106.0 2 14 8.9e-05 0.062 14.2 0.4 1 23 301 323 301 324 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 HKR1-201 - 659 1.9e-46 152.7 106.0 3 14 0.0001 0.072 14.0 0.9 1 23 329 351 329 352 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 HKR1-201 - 659 1.9e-46 152.7 106.0 4 14 7.6e-06 0.0053 17.5 0.5 1 23 357 379 357 380 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 HKR1-201 - 659 1.9e-46 152.7 106.0 5 14 5.9e-05 0.041 14.7 3.9 1 23 385 407 385 408 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 HKR1-201 - 659 1.9e-46 152.7 106.0 6 14 3e-06 0.0021 18.7 1.4 1 23 413 435 413 436 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 HKR1-201 - 659 1.9e-46 152.7 106.0 7 14 7.8e-05 0.054 14.4 2.6 1 23 441 463 441 464 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 HKR1-201 - 659 1.9e-46 152.7 106.0 8 14 0.0002 0.14 13.1 2.6 1 23 469 491 469 492 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 HKR1-201 - 659 1.9e-46 152.7 106.0 9 14 1.2e-06 0.00081 20.0 1.0 1 23 497 519 497 520 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 HKR1-201 - 659 1.9e-46 152.7 106.0 10 14 1e-05 0.007 17.1 0.2 1 23 525 547 525 548 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 HKR1-201 - 659 1.9e-46 152.7 106.0 11 14 1.3e-05 0.0088 16.8 1.7 1 23 553 575 553 576 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 HKR1-201 - 659 1.9e-46 152.7 106.0 12 14 0.00012 0.081 13.8 0.7 1 23 579 601 579 602 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 HKR1-201 - 659 1.9e-46 152.7 106.0 13 14 1.6e-05 0.011 16.5 2.9 1 23 607 629 607 630 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 HKR1-201 - 659 1.9e-46 152.7 106.0 14 14 8.7e-07 0.0006 20.4 0.9 1 23 635 657 635 658 0.96 C2H2-type zinc finger KRAB PF01352.27 42 HKR1-201 - 659 4.1e-24 84.0 0.3 1 2 2.2e-26 1.5e-23 82.1 0.1 2 42 33 73 32 73 0.98 KRAB box KRAB PF01352.27 42 HKR1-201 - 659 4.1e-24 84.0 0.3 2 2 3.4 2.4e+03 -1.7 0.0 21 40 121 140 118 140 0.84 KRAB box zf-trcl PF13451.6 48 HKR1-201 - 659 3.5e-11 42.8 47.9 1 13 0.0012 0.8 9.6 0.1 3 17 299 313 298 315 0.90 Probable zinc-ribbon domain zf-trcl PF13451.6 48 HKR1-201 - 659 3.5e-11 42.8 47.9 2 13 0.00013 0.09 12.7 0.1 3 17 327 341 325 343 0.89 Probable zinc-ribbon domain zf-trcl PF13451.6 48 HKR1-201 - 659 3.5e-11 42.8 47.9 3 13 0.019 13 5.8 0.1 3 14 355 366 355 369 0.91 Probable zinc-ribbon domain zf-trcl PF13451.6 48 HKR1-201 - 659 3.5e-11 42.8 47.9 4 13 0.043 29 4.6 0.0 3 14 383 394 381 395 0.88 Probable zinc-ribbon domain zf-trcl PF13451.6 48 HKR1-201 - 659 3.5e-11 42.8 47.9 5 13 0.18 1.3e+02 2.6 0.1 3 14 411 422 409 423 0.86 Probable zinc-ribbon domain zf-trcl PF13451.6 48 HKR1-201 - 659 3.5e-11 42.8 47.9 6 13 0.0021 1.5 8.8 0.0 3 17 439 453 437 456 0.89 Probable zinc-ribbon domain zf-trcl PF13451.6 48 HKR1-201 - 659 3.5e-11 42.8 47.9 7 13 0.81 5.6e+02 0.5 0.5 3 14 467 478 467 481 0.87 Probable zinc-ribbon domain zf-trcl PF13451.6 48 HKR1-201 - 659 3.5e-11 42.8 47.9 8 13 0.026 18 5.3 0.1 3 15 495 507 493 508 0.89 Probable zinc-ribbon domain zf-trcl PF13451.6 48 HKR1-201 - 659 3.5e-11 42.8 47.9 9 13 0.051 35 4.4 0.1 3 14 523 534 521 535 0.88 Probable zinc-ribbon domain zf-trcl PF13451.6 48 HKR1-201 - 659 3.5e-11 42.8 47.9 10 13 0.038 26 4.8 0.1 3 14 551 562 549 563 0.90 Probable zinc-ribbon domain zf-trcl PF13451.6 48 HKR1-201 - 659 3.5e-11 42.8 47.9 11 13 0.33 2.3e+02 1.8 1.3 5 14 579 588 577 589 0.87 Probable zinc-ribbon domain zf-trcl PF13451.6 48 HKR1-201 - 659 3.5e-11 42.8 47.9 12 13 0.16 1.1e+02 2.8 0.1 3 14 605 616 604 617 0.85 Probable zinc-ribbon domain zf-trcl PF13451.6 48 HKR1-201 - 659 3.5e-11 42.8 47.9 13 13 0.082 56 3.7 0.0 3 14 633 644 631 645 0.88 Probable zinc-ribbon domain zf-C2H2_11 PF16622.5 29 HKR1-201 - 659 1.1e-10 41.1 84.9 1 14 0.0018 1.2 8.9 0.1 10 28 116 134 114 134 0.93 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 HKR1-201 - 659 1.1e-10 41.1 84.9 2 14 0.012 8.2 6.3 0.1 7 17 303 313 301 321 0.80 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 HKR1-201 - 659 1.1e-10 41.1 84.9 3 14 0.11 74 3.2 0.2 7 17 331 341 329 349 0.81 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 HKR1-201 - 659 1.1e-10 41.1 84.9 4 14 0.33 2.3e+02 1.7 0.3 7 17 359 369 357 377 0.79 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 HKR1-201 - 659 1.1e-10 41.1 84.9 5 14 0.021 14 5.5 1.1 7 23 387 403 384 406 0.90 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 HKR1-201 - 659 1.1e-10 41.1 84.9 6 14 0.12 86 3.0 1.8 7 25 415 433 413 435 0.94 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 HKR1-201 - 659 1.1e-10 41.1 84.9 7 14 0.004 2.8 7.8 0.3 7 23 443 459 441 462 0.89 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 HKR1-201 - 659 1.1e-10 41.1 84.9 8 14 2.7e-05 0.019 14.7 1.9 7 24 471 488 469 489 0.94 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 HKR1-201 - 659 1.1e-10 41.1 84.9 9 14 0.0017 1.2 9.0 0.5 7 24 499 516 497 518 0.91 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 HKR1-201 - 659 1.1e-10 41.1 84.9 10 14 0.38 2.6e+02 1.5 0.1 7 14 527 534 525 544 0.86 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 HKR1-201 - 659 1.1e-10 41.1 84.9 11 14 0.0026 1.8 8.4 0.3 7 24 555 572 552 574 0.91 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 HKR1-201 - 659 1.1e-10 41.1 84.9 12 14 0.0076 5.3 6.9 1.1 4 24 578 598 575 600 0.88 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 HKR1-201 - 659 1.1e-10 41.1 84.9 13 14 0.0036 2.4 8.0 1.4 7 24 609 626 606 628 0.92 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 HKR1-201 - 659 1.1e-10 41.1 84.9 14 14 0.0034 2.4 8.0 1.2 7 24 637 654 635 656 0.93 zinc-finger C2H2-type Zn-ribbon_8 PF09723.10 40 HKR1-201 - 659 1.4e-10 41.1 55.3 1 11 5.9e-05 0.041 14.0 0.6 6 34 301 336 300 340 0.89 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 HKR1-201 - 659 1.4e-10 41.1 55.3 2 11 0.00014 0.096 12.8 1.9 6 34 329 364 328 369 0.86 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 HKR1-201 - 659 1.4e-10 41.1 55.3 3 11 7.3e-05 0.051 13.7 2.2 6 34 357 392 356 397 0.89 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 HKR1-201 - 659 1.4e-10 41.1 55.3 4 11 0.0037 2.5 8.3 3.5 6 34 385 420 384 426 0.84 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 HKR1-201 - 659 1.4e-10 41.1 55.3 5 11 0.08 55 4.0 4.9 6 34 413 448 412 451 0.73 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 HKR1-201 - 659 1.4e-10 41.1 55.3 6 11 0.0025 1.8 8.8 2.4 6 34 441 476 439 476 0.87 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 HKR1-201 - 659 1.4e-10 41.1 55.3 7 11 0.00088 0.61 10.3 3.1 6 38 469 508 466 510 0.88 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 HKR1-201 - 659 1.4e-10 41.1 55.3 8 11 0.0009 0.62 10.2 1.6 6 38 525 564 524 566 0.86 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 HKR1-201 - 659 1.4e-10 41.1 55.3 9 11 0.00053 0.36 11.0 1.9 6 38 579 618 578 620 0.85 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 HKR1-201 - 659 1.4e-10 41.1 55.3 10 11 0.0036 2.5 8.3 3.1 8 37 609 645 607 648 0.85 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 HKR1-201 - 659 1.4e-10 41.1 55.3 11 11 0.075 52 4.1 0.2 6 16 635 645 634 655 0.84 Zinc ribbon domain DUF3268 PF11672.8 118 HKR1-201 - 659 1.4e-08 35.1 36.9 1 7 0.00048 0.33 11.3 0.3 2 37 300 335 299 349 0.89 zinc-finger-containing domain DUF3268 PF11672.8 118 HKR1-201 - 659 1.4e-08 35.1 36.9 2 7 9.4e-05 0.065 13.6 0.9 2 44 356 398 355 407 0.87 zinc-finger-containing domain DUF3268 PF11672.8 118 HKR1-201 - 659 1.4e-08 35.1 36.9 3 7 0.42 2.9e+02 1.8 0.1 23 37 404 419 394 427 0.72 zinc-finger-containing domain DUF3268 PF11672.8 118 HKR1-201 - 659 1.4e-08 35.1 36.9 4 7 0.00053 0.36 11.1 1.4 2 44 440 482 439 491 0.86 zinc-finger-containing domain DUF3268 PF11672.8 118 HKR1-201 - 659 1.4e-08 35.1 36.9 5 7 0.018 12 6.2 0.3 2 37 496 531 495 539 0.91 zinc-finger-containing domain DUF3268 PF11672.8 118 HKR1-201 - 659 1.4e-08 35.1 36.9 6 7 0.021 15 6.0 0.4 3 37 553 585 551 592 0.87 zinc-finger-containing domain DUF3268 PF11672.8 118 HKR1-201 - 659 1.4e-08 35.1 36.9 7 7 0.004 2.8 8.3 0.4 2 37 606 641 605 649 0.78 zinc-finger-containing domain zf-C2H2_jaz PF12171.8 27 HKR1-201 - 659 2.5e-07 30.8 43.3 1 12 0.086 59 4.1 0.0 7 20 116 129 114 130 0.90 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 HKR1-201 - 659 2.5e-07 30.8 43.3 2 12 0.34 2.3e+02 2.2 0.0 2 24 301 323 300 324 0.89 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 HKR1-201 - 659 2.5e-07 30.8 43.3 3 12 1.9 1.3e+03 -0.2 0.1 2 12 329 339 328 352 0.70 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 HKR1-201 - 659 2.5e-07 30.8 43.3 4 12 5.6 3.9e+03 -1.7 0.1 2 20 357 375 356 377 0.66 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 HKR1-201 - 659 2.5e-07 30.8 43.3 5 12 0.024 17 5.9 0.1 2 24 385 407 384 408 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 HKR1-201 - 659 2.5e-07 30.8 43.3 6 12 1.3 8.9e+02 0.4 0.2 2 24 413 435 412 435 0.89 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 HKR1-201 - 659 2.5e-07 30.8 43.3 7 12 0.0009 0.62 10.4 0.6 2 24 441 463 440 464 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 HKR1-201 - 659 2.5e-07 30.8 43.3 8 12 0.00055 0.38 11.1 0.0 2 24 497 519 496 520 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 HKR1-201 - 659 2.5e-07 30.8 43.3 9 12 0.00014 0.099 13.0 0.0 2 24 525 547 524 548 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 HKR1-201 - 659 2.5e-07 30.8 43.3 10 12 3.1 2.1e+03 -0.8 0.1 2 11 553 562 552 563 0.87 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 HKR1-201 - 659 2.5e-07 30.8 43.3 11 12 0.29 2e+02 2.4 0.2 2 24 607 629 606 630 0.89 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 HKR1-201 - 659 2.5e-07 30.8 43.3 12 12 0.055 38 4.7 0.1 2 24 635 657 634 658 0.88 Zinc-finger double-stranded RNA-binding ADK_lid PF05191.14 36 HKR1-201 - 659 4.4e-07 29.8 46.8 1 11 7.7 5.3e+03 -2.5 0.0 16 27 90 103 65 105 0.68 Adenylate kinase, active site lid ADK_lid PF05191.14 36 HKR1-201 - 659 4.4e-07 29.8 46.8 2 11 0.0018 1.3 9.1 0.7 3 29 302 336 301 342 0.81 Adenylate kinase, active site lid ADK_lid PF05191.14 36 HKR1-201 - 659 4.4e-07 29.8 46.8 3 11 0.0016 1.1 9.3 1.9 3 30 330 365 329 370 0.78 Adenylate kinase, active site lid ADK_lid PF05191.14 36 HKR1-201 - 659 4.4e-07 29.8 46.8 4 11 0.0012 0.8 9.7 0.8 3 28 358 391 357 391 0.73 Adenylate kinase, active site lid ADK_lid PF05191.14 36 HKR1-201 - 659 4.4e-07 29.8 46.8 5 11 0.0045 3.1 7.8 0.5 3 31 386 422 385 426 0.75 Adenylate kinase, active site lid ADK_lid PF05191.14 36 HKR1-201 - 659 4.4e-07 29.8 46.8 6 11 0.12 81 3.3 0.3 3 13 442 452 441 468 0.82 Adenylate kinase, active site lid ADK_lid PF05191.14 36 HKR1-201 - 659 4.4e-07 29.8 46.8 7 11 0.011 7.5 6.6 2.2 3 29 470 504 469 510 0.82 Adenylate kinase, active site lid ADK_lid PF05191.14 36 HKR1-201 - 659 4.4e-07 29.8 46.8 8 11 0.18 1.3e+02 2.7 0.1 3 11 498 506 497 514 0.84 Adenylate kinase, active site lid ADK_lid PF05191.14 36 HKR1-201 - 659 4.4e-07 29.8 46.8 9 11 0.00073 0.5 10.4 0.6 3 33 526 564 525 568 0.76 Adenylate kinase, active site lid ADK_lid PF05191.14 36 HKR1-201 - 659 4.4e-07 29.8 46.8 10 11 0.025 17 5.5 0.7 3 29 580 614 579 620 0.70 Adenylate kinase, active site lid ADK_lid PF05191.14 36 HKR1-201 - 659 4.4e-07 29.8 46.8 11 11 0.0082 5.7 7.0 0.2 3 15 636 648 635 654 0.81 Adenylate kinase, active site lid Zn_ribbon_SprT PF17283.2 38 HKR1-201 - 659 6e-07 29.3 61.7 1 10 0.05 35 4.4 0.1 21 32 293 308 289 314 0.81 SprT-like zinc ribbon domain Zn_ribbon_SprT PF17283.2 38 HKR1-201 - 659 6e-07 29.3 61.7 2 10 0.095 66 3.5 2.8 5 32 301 336 301 342 0.69 SprT-like zinc ribbon domain Zn_ribbon_SprT PF17283.2 38 HKR1-201 - 659 6e-07 29.3 61.7 3 10 0.0024 1.7 8.7 0.7 5 36 329 368 328 370 0.81 SprT-like zinc ribbon domain Zn_ribbon_SprT PF17283.2 38 HKR1-201 - 659 6e-07 29.3 61.7 4 10 0.14 94 3.0 0.5 24 35 380 395 373 398 0.64 SprT-like zinc ribbon domain Zn_ribbon_SprT PF17283.2 38 HKR1-201 - 659 6e-07 29.3 61.7 5 10 0.00018 0.12 12.3 3.0 5 37 385 425 384 426 0.92 SprT-like zinc ribbon domain Zn_ribbon_SprT PF17283.2 38 HKR1-201 - 659 6e-07 29.3 61.7 6 10 0.00043 0.29 11.1 3.9 5 37 441 481 440 482 0.95 SprT-like zinc ribbon domain Zn_ribbon_SprT PF17283.2 38 HKR1-201 - 659 6e-07 29.3 61.7 7 10 0.014 9.7 6.2 6.6 6 32 498 533 497 566 0.85 SprT-like zinc ribbon domain Zn_ribbon_SprT PF17283.2 38 HKR1-201 - 659 6e-07 29.3 61.7 8 10 0.89 6.2e+02 0.4 0.6 24 32 572 586 569 590 0.66 SprT-like zinc ribbon domain Zn_ribbon_SprT PF17283.2 38 HKR1-201 - 659 6e-07 29.3 61.7 9 10 0.26 1.8e+02 2.1 2.3 7 33 581 615 578 620 0.72 SprT-like zinc ribbon domain Zn_ribbon_SprT PF17283.2 38 HKR1-201 - 659 6e-07 29.3 61.7 10 10 0.00033 0.23 11.4 3.7 5 32 607 643 606 647 0.85 SprT-like zinc ribbon domain zinc_ribbon_15 PF17032.5 86 HKR1-201 - 659 6.7e-07 30.0 39.4 1 7 0.0073 5 7.9 0.2 36 75 299 338 287 347 0.84 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 HKR1-201 - 659 6.7e-07 30.0 39.4 2 7 0.0016 1.1 10.0 0.7 38 76 357 395 344 400 0.87 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 HKR1-201 - 659 6.7e-07 30.0 39.4 3 7 0.00092 0.64 10.8 0.8 35 76 410 451 399 456 0.86 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 HKR1-201 - 659 6.7e-07 30.0 39.4 4 7 0.03 21 6.0 1.6 38 76 469 507 460 512 0.84 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 HKR1-201 - 659 6.7e-07 30.0 39.4 5 7 0.0096 6.6 7.6 0.4 35 78 494 537 486 541 0.84 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 HKR1-201 - 659 6.7e-07 30.0 39.4 6 7 0.022 15 6.4 3.2 36 78 523 565 515 594 0.80 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 HKR1-201 - 659 6.7e-07 30.0 39.4 7 7 0.0054 3.7 8.4 3.4 29 78 598 647 579 650 0.81 zinc-ribbon family # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/HKR1-201.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/HKR1-201.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/HKR1-201.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/HKR1-201.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/HKR1-201.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:54:36 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-C2H2 PF00096.26 23 HKR1-202 - 640 1.7e-72 236.0 110.6 1 14 0.47 3.1e+02 2.1 0.0 6 19 97 110 95 111 0.91 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 HKR1-202 - 640 1.7e-72 236.0 110.6 2 14 2.9e-07 0.0002 21.7 0.5 1 23 282 304 282 304 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 HKR1-202 - 640 1.7e-72 236.0 110.6 3 14 8.2e-08 5.5e-05 23.4 1.1 1 23 310 332 310 332 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 HKR1-202 - 640 1.7e-72 236.0 110.6 4 14 3.9e-08 2.6e-05 24.4 0.4 1 23 338 360 338 360 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 HKR1-202 - 640 1.7e-72 236.0 110.6 5 14 1.7e-07 0.00011 22.4 5.0 1 23 366 388 366 388 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 HKR1-202 - 640 1.7e-72 236.0 110.6 6 14 1.4e-07 9.3e-05 22.7 1.9 1 23 394 416 394 416 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 HKR1-202 - 640 1.7e-72 236.0 110.6 7 14 2.8e-07 0.00019 21.7 3.1 1 23 422 444 422 444 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 HKR1-202 - 640 1.7e-72 236.0 110.6 8 14 1.4e-07 9.3e-05 22.7 2.6 1 23 450 472 450 472 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 HKR1-202 - 640 1.7e-72 236.0 110.6 9 14 1e-08 7e-06 26.2 1.5 1 23 478 500 478 500 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 HKR1-202 - 640 1.7e-72 236.0 110.6 10 14 2.3e-08 1.5e-05 25.2 0.2 1 23 506 528 506 528 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 HKR1-202 - 640 1.7e-72 236.0 110.6 11 14 1.5e-06 0.00097 19.5 2.4 1 23 534 556 534 556 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 HKR1-202 - 640 1.7e-72 236.0 110.6 12 14 2.1e-05 0.014 15.8 0.8 1 23 560 582 560 582 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 HKR1-202 - 640 1.7e-72 236.0 110.6 13 14 1.6e-08 1.1e-05 25.6 3.6 1 23 588 610 588 610 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 HKR1-202 - 640 1.7e-72 236.0 110.6 14 14 2.1e-09 1.4e-06 28.4 1.7 1 23 616 638 616 638 0.98 Zinc finger, C2H2 type zf-H2C2_2 PF13465.6 26 HKR1-202 - 640 3.4e-65 213.8 96.4 1 15 3.2 2.1e+03 -0.6 0.0 7 15 246 254 245 257 0.84 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 HKR1-202 - 640 3.4e-65 213.8 96.4 2 15 0.00028 0.19 12.2 0.3 7 25 274 292 274 292 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 HKR1-202 - 640 3.4e-65 213.8 96.4 3 15 2.2e-08 1.5e-05 25.2 0.2 1 25 296 320 296 320 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 HKR1-202 - 640 3.4e-65 213.8 96.4 4 15 3.4e-07 0.00022 21.5 0.5 1 25 324 348 324 348 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 HKR1-202 - 640 3.4e-65 213.8 96.4 5 15 1.2e-07 8e-05 22.9 0.1 1 24 352 375 352 377 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 HKR1-202 - 640 3.4e-65 213.8 96.4 6 15 1.2e-07 7.8e-05 22.9 1.1 1 25 380 404 380 405 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 HKR1-202 - 640 3.4e-65 213.8 96.4 7 15 1.2e-09 8.3e-07 29.2 2.6 1 24 408 431 408 432 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 HKR1-202 - 640 3.4e-65 213.8 96.4 8 15 4.5e-07 0.0003 21.1 1.1 1 24 436 459 436 460 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 HKR1-202 - 640 3.4e-65 213.8 96.4 9 15 7e-11 4.7e-08 33.1 0.6 1 26 464 489 464 489 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 HKR1-202 - 640 3.4e-65 213.8 96.4 10 15 5.8e-08 3.8e-05 23.9 0.1 2 25 493 516 492 517 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 HKR1-202 - 640 3.4e-65 213.8 96.4 11 15 2.2e-07 0.00015 22.0 0.5 3 25 522 544 521 545 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 HKR1-202 - 640 3.4e-65 213.8 96.4 12 15 0.072 48 4.6 0.3 1 24 548 569 548 569 0.89 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 HKR1-202 - 640 3.4e-65 213.8 96.4 13 15 0.00018 0.12 12.9 0.2 2 25 575 598 574 599 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 HKR1-202 - 640 3.4e-65 213.8 96.4 14 15 1.2e-07 7.8e-05 22.9 1.2 1 25 602 626 602 627 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 HKR1-202 - 640 3.4e-65 213.8 96.4 15 15 0.21 1.4e+02 3.1 0.3 1 11 630 640 630 640 0.90 Zinc-finger double domain zf-C2H2_4 PF13894.6 24 HKR1-202 - 640 1.2e-46 153.3 106.0 1 14 0.011 7.5 7.7 0.1 4 24 95 115 94 115 0.89 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 HKR1-202 - 640 1.2e-46 153.3 106.0 2 14 8.9e-05 0.059 14.2 0.4 1 23 282 304 282 305 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 HKR1-202 - 640 1.2e-46 153.3 106.0 3 14 0.00011 0.07 14.0 0.9 1 23 310 332 310 333 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 HKR1-202 - 640 1.2e-46 153.3 106.0 4 14 7.7e-06 0.0051 17.5 0.5 1 23 338 360 338 361 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 HKR1-202 - 640 1.2e-46 153.3 106.0 5 14 5.9e-05 0.04 14.8 3.9 1 23 366 388 366 389 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 HKR1-202 - 640 1.2e-46 153.3 106.0 6 14 3e-06 0.002 18.8 1.4 1 23 394 416 394 417 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 HKR1-202 - 640 1.2e-46 153.3 106.0 7 14 7.8e-05 0.052 14.4 2.6 1 23 422 444 422 445 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 HKR1-202 - 640 1.2e-46 153.3 106.0 8 14 0.0002 0.13 13.1 2.6 1 23 450 472 450 473 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 HKR1-202 - 640 1.2e-46 153.3 106.0 9 14 1.2e-06 0.00078 20.1 1.0 1 23 478 500 478 501 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 HKR1-202 - 640 1.2e-46 153.3 106.0 10 14 1e-05 0.0067 17.2 0.2 1 23 506 528 506 529 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 HKR1-202 - 640 1.2e-46 153.3 106.0 11 14 1.3e-05 0.0085 16.9 1.7 1 23 534 556 534 557 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 HKR1-202 - 640 1.2e-46 153.3 106.0 12 14 0.00012 0.078 13.9 0.7 1 23 560 582 560 583 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 HKR1-202 - 640 1.2e-46 153.3 106.0 13 14 1.6e-05 0.01 16.6 2.9 1 23 588 610 588 611 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 HKR1-202 - 640 1.2e-46 153.3 106.0 14 14 8.7e-07 0.00058 20.5 0.9 1 23 616 638 616 639 0.96 C2H2-type zinc finger KRAB PF01352.27 42 HKR1-202 - 640 3.8e-24 84.0 0.3 1 2 2.2e-26 1.5e-23 82.2 0.1 2 42 14 54 13 54 0.98 KRAB box KRAB PF01352.27 42 HKR1-202 - 640 3.8e-24 84.0 0.3 2 2 3.5 2.3e+03 -1.7 0.0 21 40 102 121 99 121 0.84 KRAB box zf-trcl PF13451.6 48 HKR1-202 - 640 2.3e-11 43.4 47.9 1 13 0.0012 0.78 9.7 0.1 3 17 280 294 279 296 0.90 Probable zinc-ribbon domain zf-trcl PF13451.6 48 HKR1-202 - 640 2.3e-11 43.4 47.9 2 13 0.00013 0.087 12.7 0.1 3 17 308 322 306 324 0.89 Probable zinc-ribbon domain zf-trcl PF13451.6 48 HKR1-202 - 640 2.3e-11 43.4 47.9 3 13 0.019 13 5.8 0.1 3 14 336 347 336 350 0.91 Probable zinc-ribbon domain zf-trcl PF13451.6 48 HKR1-202 - 640 2.3e-11 43.4 47.9 4 13 0.043 28 4.7 0.0 3 14 364 375 362 376 0.88 Probable zinc-ribbon domain zf-trcl PF13451.6 48 HKR1-202 - 640 2.3e-11 43.4 47.9 5 13 0.19 1.2e+02 2.6 0.1 3 14 392 403 390 404 0.86 Probable zinc-ribbon domain zf-trcl PF13451.6 48 HKR1-202 - 640 2.3e-11 43.4 47.9 6 13 0.0021 1.4 8.8 0.0 3 17 420 434 418 437 0.89 Probable zinc-ribbon domain zf-trcl PF13451.6 48 HKR1-202 - 640 2.3e-11 43.4 47.9 7 13 0.81 5.4e+02 0.6 0.5 3 14 448 459 448 462 0.87 Probable zinc-ribbon domain zf-trcl PF13451.6 48 HKR1-202 - 640 2.3e-11 43.4 47.9 8 13 0.027 18 5.3 0.1 3 15 476 488 474 489 0.89 Probable zinc-ribbon domain zf-trcl PF13451.6 48 HKR1-202 - 640 2.3e-11 43.4 47.9 9 13 0.051 34 4.4 0.1 3 14 504 515 502 516 0.88 Probable zinc-ribbon domain zf-trcl PF13451.6 48 HKR1-202 - 640 2.3e-11 43.4 47.9 10 13 0.038 25 4.8 0.1 3 14 532 543 530 544 0.90 Probable zinc-ribbon domain zf-trcl PF13451.6 48 HKR1-202 - 640 2.3e-11 43.4 47.9 11 13 0.33 2.2e+02 1.8 1.3 5 14 560 569 558 570 0.87 Probable zinc-ribbon domain zf-trcl PF13451.6 48 HKR1-202 - 640 2.3e-11 43.4 47.9 12 13 0.16 1e+02 2.9 0.1 3 14 586 597 585 598 0.85 Probable zinc-ribbon domain zf-trcl PF13451.6 48 HKR1-202 - 640 2.3e-11 43.4 47.9 13 13 0.082 55 3.8 0.0 3 14 614 625 612 626 0.88 Probable zinc-ribbon domain zf-C2H2_11 PF16622.5 29 HKR1-202 - 640 7.2e-11 41.7 84.9 1 14 0.0018 1.2 9.0 0.1 10 28 97 115 95 115 0.93 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 HKR1-202 - 640 7.2e-11 41.7 84.9 2 14 0.012 7.9 6.3 0.1 7 17 284 294 282 302 0.80 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 HKR1-202 - 640 7.2e-11 41.7 84.9 3 14 0.11 72 3.3 0.2 7 17 312 322 310 330 0.81 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 HKR1-202 - 640 7.2e-11 41.7 84.9 4 14 0.33 2.2e+02 1.7 0.3 7 17 340 350 338 358 0.79 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 HKR1-202 - 640 7.2e-11 41.7 84.9 5 14 0.021 14 5.6 1.1 7 23 368 384 365 387 0.90 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 HKR1-202 - 640 7.2e-11 41.7 84.9 6 14 0.12 83 3.1 1.8 7 25 396 414 394 416 0.94 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 HKR1-202 - 640 7.2e-11 41.7 84.9 7 14 0.004 2.7 7.8 0.3 7 23 424 440 422 443 0.89 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 HKR1-202 - 640 7.2e-11 41.7 84.9 8 14 2.7e-05 0.018 14.8 1.9 7 24 452 469 450 470 0.94 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 HKR1-202 - 640 7.2e-11 41.7 84.9 9 14 0.0017 1.1 9.0 0.5 7 24 480 497 478 499 0.91 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 HKR1-202 - 640 7.2e-11 41.7 84.9 10 14 0.38 2.5e+02 1.5 0.1 7 14 508 515 506 525 0.86 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 HKR1-202 - 640 7.2e-11 41.7 84.9 11 14 0.0026 1.7 8.4 0.3 7 24 536 553 533 555 0.91 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 HKR1-202 - 640 7.2e-11 41.7 84.9 12 14 0.0077 5.1 7.0 1.1 4 24 559 579 556 581 0.88 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 HKR1-202 - 640 7.2e-11 41.7 84.9 13 14 0.0036 2.4 8.0 1.4 7 24 590 607 587 609 0.92 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 HKR1-202 - 640 7.2e-11 41.7 84.9 14 14 0.0034 2.3 8.1 1.2 7 24 618 635 616 637 0.93 zinc-finger C2H2-type Zn-ribbon_8 PF09723.10 40 HKR1-202 - 640 1.6e-10 40.9 55.8 1 10 6.7e-05 0.045 13.9 0.8 6 34 282 317 281 320 0.89 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 HKR1-202 - 640 1.6e-10 40.9 55.8 2 10 0.00014 0.093 12.9 1.9 6 34 310 345 309 350 0.86 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 HKR1-202 - 640 1.6e-10 40.9 55.8 3 10 7.5e-05 0.05 13.7 2.2 6 34 338 373 337 378 0.89 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 HKR1-202 - 640 1.6e-10 40.9 55.8 4 10 0.0039 2.6 8.2 3.6 6 34 366 401 365 407 0.84 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 HKR1-202 - 640 1.6e-10 40.9 55.8 5 10 0.088 58 3.9 5.0 6 34 394 429 393 432 0.73 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 HKR1-202 - 640 1.6e-10 40.9 55.8 6 10 0.04 27 5.0 8.9 6 34 450 485 420 491 0.71 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 HKR1-202 - 640 1.6e-10 40.9 55.8 7 10 0.00094 0.63 10.2 1.7 6 38 506 545 505 547 0.86 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 HKR1-202 - 640 1.6e-10 40.9 55.8 8 10 0.00053 0.36 11.0 1.9 6 38 560 599 559 601 0.85 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 HKR1-202 - 640 1.6e-10 40.9 55.8 9 10 0.0036 2.4 8.4 3.1 8 37 590 626 588 629 0.85 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 HKR1-202 - 640 1.6e-10 40.9 55.8 10 10 0.075 50 4.1 0.2 6 16 616 626 615 636 0.84 Zinc ribbon domain DUF3268 PF11672.8 118 HKR1-202 - 640 1.1e-08 35.4 36.9 1 7 0.00048 0.32 11.3 0.3 2 37 281 316 280 330 0.89 zinc-finger-containing domain DUF3268 PF11672.8 118 HKR1-202 - 640 1.1e-08 35.4 36.9 2 7 9.4e-05 0.062 13.6 0.9 2 44 337 379 336 388 0.87 zinc-finger-containing domain DUF3268 PF11672.8 118 HKR1-202 - 640 1.1e-08 35.4 36.9 3 7 0.42 2.8e+02 1.8 0.1 23 37 385 400 375 408 0.72 zinc-finger-containing domain DUF3268 PF11672.8 118 HKR1-202 - 640 1.1e-08 35.4 36.9 4 7 0.00053 0.35 11.2 1.4 2 44 421 463 420 472 0.86 zinc-finger-containing domain DUF3268 PF11672.8 118 HKR1-202 - 640 1.1e-08 35.4 36.9 5 7 0.018 12 6.2 0.3 2 37 477 512 476 520 0.91 zinc-finger-containing domain DUF3268 PF11672.8 118 HKR1-202 - 640 1.1e-08 35.4 36.9 6 7 0.021 14 6.0 0.4 3 37 534 566 532 573 0.87 zinc-finger-containing domain DUF3268 PF11672.8 118 HKR1-202 - 640 1.1e-08 35.4 36.9 7 7 0.004 2.7 8.4 0.4 2 37 587 622 586 630 0.78 zinc-finger-containing domain zf-C2H2_jaz PF12171.8 27 HKR1-202 - 640 1.7e-07 31.3 43.3 1 12 0.086 57 4.2 0.0 7 20 97 110 95 111 0.90 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 HKR1-202 - 640 1.7e-07 31.3 43.3 2 12 0.34 2.3e+02 2.3 0.0 2 24 282 304 281 305 0.89 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 HKR1-202 - 640 1.7e-07 31.3 43.3 3 12 1.9 1.3e+03 -0.1 0.1 2 12 310 320 309 333 0.70 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 HKR1-202 - 640 1.7e-07 31.3 43.3 4 12 5.6 3.7e+03 -1.6 0.1 2 20 338 356 337 358 0.66 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 HKR1-202 - 640 1.7e-07 31.3 43.3 5 12 0.024 16 5.9 0.1 2 24 366 388 365 389 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 HKR1-202 - 640 1.7e-07 31.3 43.3 6 12 1.3 8.6e+02 0.4 0.2 2 24 394 416 393 416 0.89 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 HKR1-202 - 640 1.7e-07 31.3 43.3 7 12 0.0009 0.6 10.5 0.6 2 24 422 444 421 445 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 HKR1-202 - 640 1.7e-07 31.3 43.3 8 12 0.00056 0.37 11.1 0.0 2 24 478 500 477 501 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 HKR1-202 - 640 1.7e-07 31.3 43.3 9 12 0.00014 0.096 13.0 0.0 2 24 506 528 505 529 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 HKR1-202 - 640 1.7e-07 31.3 43.3 10 12 3.1 2.1e+03 -0.8 0.1 2 11 534 543 533 544 0.87 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 HKR1-202 - 640 1.7e-07 31.3 43.3 11 12 0.29 1.9e+02 2.5 0.2 2 24 588 610 587 611 0.89 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 HKR1-202 - 640 1.7e-07 31.3 43.3 12 12 0.055 36 4.8 0.1 2 24 616 638 615 639 0.88 Zinc-finger double-stranded RNA-binding zinc_ribbon_15 PF17032.5 86 HKR1-202 - 640 3e-07 31.1 38.6 1 8 0.0073 4.9 8.0 0.2 36 75 280 319 268 326 0.83 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 HKR1-202 - 640 3e-07 31.1 38.6 2 8 0.0016 1.1 10.1 0.6 38 76 338 376 325 381 0.87 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 HKR1-202 - 640 3e-07 31.1 38.6 3 8 0.00095 0.63 10.8 0.8 35 76 391 432 381 438 0.86 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 HKR1-202 - 640 3e-07 31.1 38.6 4 8 0.03 20 6.0 1.7 38 77 450 489 441 496 0.84 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 HKR1-202 - 640 3e-07 31.1 38.6 5 8 0.0092 6.1 7.7 0.3 35 78 475 518 469 524 0.84 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 HKR1-202 - 640 3e-07 31.1 38.6 6 8 0.0036 2.4 9.0 0.4 35 78 503 546 495 552 0.86 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 HKR1-202 - 640 3e-07 31.1 38.6 7 8 0.04 26 5.6 0.8 33 74 529 568 521 575 0.71 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 HKR1-202 - 640 3e-07 31.1 38.6 8 8 0.0042 2.8 8.8 3.0 29 78 579 628 560 631 0.81 zinc-ribbon family ADK_lid PF05191.14 36 HKR1-202 - 640 3.5e-07 30.1 46.9 1 11 7.8 5.2e+03 -2.4 0.0 16 27 71 84 46 86 0.68 Adenylate kinase, active site lid ADK_lid PF05191.14 36 HKR1-202 - 640 3.5e-07 30.1 46.9 2 11 0.0024 1.6 8.8 0.9 3 28 283 316 282 320 0.80 Adenylate kinase, active site lid ADK_lid PF05191.14 36 HKR1-202 - 640 3.5e-07 30.1 46.9 3 11 0.0015 1 9.4 1.9 3 30 311 346 310 351 0.78 Adenylate kinase, active site lid ADK_lid PF05191.14 36 HKR1-202 - 640 3.5e-07 30.1 46.9 4 11 0.012 8.1 6.5 0.1 3 15 339 351 338 358 0.82 Adenylate kinase, active site lid ADK_lid PF05191.14 36 HKR1-202 - 640 3.5e-07 30.1 46.9 5 11 0.0045 3 7.9 0.5 3 31 367 403 366 407 0.75 Adenylate kinase, active site lid ADK_lid PF05191.14 36 HKR1-202 - 640 3.5e-07 30.1 46.9 6 11 0.12 78 3.4 0.3 3 13 423 433 422 449 0.82 Adenylate kinase, active site lid ADK_lid PF05191.14 36 HKR1-202 - 640 3.5e-07 30.1 46.9 7 11 0.011 7.6 6.6 2.3 3 29 451 485 450 491 0.82 Adenylate kinase, active site lid ADK_lid PF05191.14 36 HKR1-202 - 640 3.5e-07 30.1 46.9 8 11 0.19 1.2e+02 2.7 0.1 3 11 479 487 478 495 0.84 Adenylate kinase, active site lid ADK_lid PF05191.14 36 HKR1-202 - 640 3.5e-07 30.1 46.9 9 11 0.00074 0.49 10.4 0.6 3 33 507 545 506 548 0.75 Adenylate kinase, active site lid ADK_lid PF05191.14 36 HKR1-202 - 640 3.5e-07 30.1 46.9 10 11 0.024 16 5.6 0.6 3 29 561 595 560 601 0.70 Adenylate kinase, active site lid ADK_lid PF05191.14 36 HKR1-202 - 640 3.5e-07 30.1 46.9 11 11 0.0083 5.5 7.1 0.2 3 15 617 629 616 635 0.81 Adenylate kinase, active site lid Zn_ribbon_SprT PF17283.2 38 HKR1-202 - 640 3.9e-07 29.9 61.5 1 10 0.051 34 4.5 0.1 21 32 274 289 270 295 0.81 SprT-like zinc ribbon domain Zn_ribbon_SprT PF17283.2 38 HKR1-202 - 640 3.9e-07 29.9 61.5 2 10 0.093 62 3.6 2.8 5 32 282 317 282 323 0.69 SprT-like zinc ribbon domain Zn_ribbon_SprT PF17283.2 38 HKR1-202 - 640 3.9e-07 29.9 61.5 3 10 0.0024 1.6 8.7 0.7 5 36 310 349 309 351 0.81 SprT-like zinc ribbon domain Zn_ribbon_SprT PF17283.2 38 HKR1-202 - 640 3.9e-07 29.9 61.5 4 10 0.14 91 3.1 0.5 24 35 361 376 354 379 0.64 SprT-like zinc ribbon domain Zn_ribbon_SprT PF17283.2 38 HKR1-202 - 640 3.9e-07 29.9 61.5 5 10 0.00016 0.11 12.4 2.9 5 37 366 406 365 407 0.92 SprT-like zinc ribbon domain Zn_ribbon_SprT PF17283.2 38 HKR1-202 - 640 3.9e-07 29.9 61.5 6 10 0.00041 0.27 11.2 3.8 5 37 422 462 421 463 0.95 SprT-like zinc ribbon domain Zn_ribbon_SprT PF17283.2 38 HKR1-202 - 640 3.9e-07 29.9 61.5 7 10 0.014 9.2 6.3 6.6 6 32 479 514 478 547 0.85 SprT-like zinc ribbon domain Zn_ribbon_SprT PF17283.2 38 HKR1-202 - 640 3.9e-07 29.9 61.5 8 10 0.89 5.9e+02 0.5 0.5 24 32 553 567 550 571 0.66 SprT-like zinc ribbon domain Zn_ribbon_SprT PF17283.2 38 HKR1-202 - 640 3.9e-07 29.9 61.5 9 10 0.35 2.3e+02 1.8 2.7 7 33 562 596 559 602 0.72 SprT-like zinc ribbon domain Zn_ribbon_SprT PF17283.2 38 HKR1-202 - 640 3.9e-07 29.9 61.5 10 10 0.00037 0.24 11.3 3.9 5 32 588 624 587 628 0.85 SprT-like zinc ribbon domain # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/HKR1-202.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/HKR1-202.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/HKR1-202.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/HKR1-202.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/HKR1-202.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:54:37 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-C2H2 PF00096.26 23 HKR1-203 - 598 5.9e-73 237.5 110.6 1 14 0.42 2.9e+02 2.2 0.0 6 19 55 68 53 69 0.91 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 HKR1-203 - 598 5.9e-73 237.5 110.6 2 14 2.6e-07 0.00018 21.8 0.5 1 23 240 262 240 262 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 HKR1-203 - 598 5.9e-73 237.5 110.6 3 14 7.3e-08 5e-05 23.5 1.1 1 23 268 290 268 290 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 HKR1-203 - 598 5.9e-73 237.5 110.6 4 14 3.4e-08 2.4e-05 24.5 0.4 1 23 296 318 296 318 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 HKR1-203 - 598 5.9e-73 237.5 110.6 5 14 1.5e-07 0.0001 22.5 5.0 1 23 324 346 324 346 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 HKR1-203 - 598 5.9e-73 237.5 110.6 6 14 1.2e-07 8.6e-05 22.8 1.9 1 23 352 374 352 374 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 HKR1-203 - 598 5.9e-73 237.5 110.6 7 14 2.5e-07 0.00017 21.8 3.1 1 23 380 402 380 402 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 HKR1-203 - 598 5.9e-73 237.5 110.6 8 14 1.2e-07 8.6e-05 22.8 2.6 1 23 408 430 408 430 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 HKR1-203 - 598 5.9e-73 237.5 110.6 9 14 9.3e-09 6.4e-06 26.3 1.5 1 23 436 458 436 458 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 HKR1-203 - 598 5.9e-73 237.5 110.6 10 14 2e-08 1.4e-05 25.3 0.2 1 23 464 486 464 486 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 HKR1-203 - 598 5.9e-73 237.5 110.6 11 14 1.3e-06 0.0009 19.6 2.4 1 23 492 514 492 514 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 HKR1-203 - 598 5.9e-73 237.5 110.6 12 14 1.9e-05 0.013 15.9 0.8 1 23 518 540 518 540 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 HKR1-203 - 598 5.9e-73 237.5 110.6 13 14 1.4e-08 9.8e-06 25.8 3.6 1 23 546 568 546 568 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 HKR1-203 - 598 5.9e-73 237.5 110.6 14 14 1.8e-09 1.3e-06 28.5 1.7 1 23 574 596 574 596 0.98 Zinc finger, C2H2 type zf-H2C2_2 PF13465.6 26 HKR1-203 - 598 1e-65 215.4 96.4 1 15 2.9 2e+03 -0.5 0.0 7 15 204 212 203 215 0.84 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 HKR1-203 - 598 1e-65 215.4 96.4 2 15 0.00025 0.17 12.3 0.3 7 25 232 250 232 250 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 HKR1-203 - 598 1e-65 215.4 96.4 3 15 2e-08 1.4e-05 25.3 0.2 1 25 254 278 254 278 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 HKR1-203 - 598 1e-65 215.4 96.4 4 15 3e-07 0.00021 21.6 0.5 1 25 282 306 282 306 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 HKR1-203 - 598 1e-65 215.4 96.4 5 15 1.1e-07 7.4e-05 23.0 0.1 1 24 310 333 310 335 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 HKR1-203 - 598 1e-65 215.4 96.4 6 15 1e-07 7.2e-05 23.0 1.1 1 25 338 362 338 363 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 HKR1-203 - 598 1e-65 215.4 96.4 7 15 1.1e-09 7.6e-07 29.3 2.6 1 24 366 389 366 390 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 HKR1-203 - 598 1e-65 215.4 96.4 8 15 4e-07 0.00028 21.2 1.1 1 24 394 417 394 418 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 HKR1-203 - 598 1e-65 215.4 96.4 9 15 6.3e-11 4.3e-08 33.2 0.6 1 26 422 447 422 447 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 HKR1-203 - 598 1e-65 215.4 96.4 10 15 5.2e-08 3.6e-05 24.0 0.1 2 25 451 474 450 475 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 HKR1-203 - 598 1e-65 215.4 96.4 11 15 2e-07 0.00014 22.1 0.5 3 25 480 502 479 503 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 HKR1-203 - 598 1e-65 215.4 96.4 12 15 0.064 44 4.7 0.3 1 24 506 527 506 527 0.89 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 HKR1-203 - 598 1e-65 215.4 96.4 13 15 0.00016 0.11 13.0 0.2 2 25 533 556 532 557 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 HKR1-203 - 598 1e-65 215.4 96.4 14 15 1e-07 7.2e-05 23.0 1.2 1 25 560 584 560 585 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 HKR1-203 - 598 1e-65 215.4 96.4 15 15 0.19 1.3e+02 3.2 0.3 1 11 588 598 588 598 0.90 Zinc-finger double domain zf-C2H2_4 PF13894.6 24 HKR1-203 - 598 4.1e-47 154.7 106.0 1 14 0.01 6.9 7.8 0.1 4 24 53 73 52 73 0.89 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 HKR1-203 - 598 4.1e-47 154.7 106.0 2 14 7.9e-05 0.055 14.3 0.4 1 23 240 262 240 263 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 HKR1-203 - 598 4.1e-47 154.7 106.0 3 14 9.4e-05 0.064 14.1 0.9 1 23 268 290 268 291 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 HKR1-203 - 598 4.1e-47 154.7 106.0 4 14 6.8e-06 0.0047 17.7 0.5 1 23 296 318 296 319 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 HKR1-203 - 598 4.1e-47 154.7 106.0 5 14 5.3e-05 0.036 14.9 3.9 1 23 324 346 324 347 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 HKR1-203 - 598 4.1e-47 154.7 106.0 6 14 2.7e-06 0.0019 18.9 1.4 1 23 352 374 352 375 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 HKR1-203 - 598 4.1e-47 154.7 106.0 7 14 6.9e-05 0.048 14.5 2.6 1 23 380 402 380 403 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 HKR1-203 - 598 4.1e-47 154.7 106.0 8 14 0.00018 0.12 13.3 2.6 1 23 408 430 408 431 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 HKR1-203 - 598 4.1e-47 154.7 106.0 9 14 1e-06 0.00072 20.2 1.0 1 23 436 458 436 459 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 HKR1-203 - 598 4.1e-47 154.7 106.0 10 14 9e-06 0.0062 17.3 0.2 1 23 464 486 464 487 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 HKR1-203 - 598 4.1e-47 154.7 106.0 11 14 1.1e-05 0.0078 17.0 1.7 1 23 492 514 492 515 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 HKR1-203 - 598 4.1e-47 154.7 106.0 12 14 0.0001 0.072 14.0 0.7 1 23 518 540 518 541 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 HKR1-203 - 598 4.1e-47 154.7 106.0 13 14 1.4e-05 0.0096 16.7 2.9 1 23 546 568 546 569 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 HKR1-203 - 598 4.1e-47 154.7 106.0 14 14 7.8e-07 0.00053 20.6 0.9 1 23 574 596 574 597 0.96 C2H2-type zinc finger zf-trcl PF13451.6 48 HKR1-203 - 598 1.2e-11 44.3 48.3 1 13 0.001 0.72 9.8 0.1 3 17 238 252 237 254 0.90 Probable zinc-ribbon domain zf-trcl PF13451.6 48 HKR1-203 - 598 1.2e-11 44.3 48.3 2 13 0.00012 0.081 12.8 0.1 3 17 266 280 264 282 0.89 Probable zinc-ribbon domain zf-trcl PF13451.6 48 HKR1-203 - 598 1.2e-11 44.3 48.3 3 13 0.017 12 5.9 0.1 3 14 294 305 294 308 0.91 Probable zinc-ribbon domain zf-trcl PF13451.6 48 HKR1-203 - 598 1.2e-11 44.3 48.3 4 13 0.038 26 4.8 0.0 3 14 322 333 320 334 0.88 Probable zinc-ribbon domain zf-trcl PF13451.6 48 HKR1-203 - 598 1.2e-11 44.3 48.3 5 13 0.17 1.1e+02 2.8 0.1 3 14 350 361 348 362 0.86 Probable zinc-ribbon domain zf-trcl PF13451.6 48 HKR1-203 - 598 1.2e-11 44.3 48.3 6 13 0.0019 1.3 8.9 0.0 3 17 378 392 376 395 0.89 Probable zinc-ribbon domain zf-trcl PF13451.6 48 HKR1-203 - 598 1.2e-11 44.3 48.3 7 13 0.73 5e+02 0.7 0.5 3 14 406 417 406 420 0.87 Probable zinc-ribbon domain zf-trcl PF13451.6 48 HKR1-203 - 598 1.2e-11 44.3 48.3 8 13 0.023 16 5.5 0.1 3 15 434 446 432 448 0.90 Probable zinc-ribbon domain zf-trcl PF13451.6 48 HKR1-203 - 598 1.2e-11 44.3 48.3 9 13 0.046 31 4.5 0.1 3 14 462 473 460 474 0.88 Probable zinc-ribbon domain zf-trcl PF13451.6 48 HKR1-203 - 598 1.2e-11 44.3 48.3 10 13 0.034 24 4.9 0.1 3 14 490 501 488 502 0.90 Probable zinc-ribbon domain zf-trcl PF13451.6 48 HKR1-203 - 598 1.2e-11 44.3 48.3 11 13 0.3 2.1e+02 1.9 1.3 5 14 518 527 516 528 0.87 Probable zinc-ribbon domain zf-trcl PF13451.6 48 HKR1-203 - 598 1.2e-11 44.3 48.3 12 13 0.14 97 3.0 0.1 3 14 544 555 543 556 0.85 Probable zinc-ribbon domain zf-trcl PF13451.6 48 HKR1-203 - 598 1.2e-11 44.3 48.3 13 13 0.073 51 3.9 0.0 3 14 572 583 570 584 0.88 Probable zinc-ribbon domain zf-C2H2_11 PF16622.5 29 HKR1-203 - 598 2.5e-11 43.1 84.9 1 14 0.0016 1.1 9.1 0.1 10 28 55 73 53 73 0.93 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 HKR1-203 - 598 2.5e-11 43.1 84.9 2 14 0.011 7.4 6.4 0.1 7 17 242 252 240 260 0.80 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 HKR1-203 - 598 2.5e-11 43.1 84.9 3 14 0.096 66 3.4 0.2 7 17 270 280 268 288 0.81 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 HKR1-203 - 598 2.5e-11 43.1 84.9 4 14 0.29 2e+02 1.8 0.3 7 17 298 308 296 316 0.79 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 HKR1-203 - 598 2.5e-11 43.1 84.9 5 14 0.018 13 5.7 1.1 7 23 326 342 323 345 0.90 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 HKR1-203 - 598 2.5e-11 43.1 84.9 6 14 0.11 77 3.2 1.8 7 25 354 372 352 374 0.94 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 HKR1-203 - 598 2.5e-11 43.1 84.9 7 14 0.0036 2.5 8.0 0.3 7 23 382 398 380 401 0.89 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 HKR1-203 - 598 2.5e-11 43.1 84.9 8 14 2.4e-05 0.017 14.9 1.9 7 24 410 427 408 428 0.94 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 HKR1-203 - 598 2.5e-11 43.1 84.9 9 14 0.0015 1.1 9.1 0.5 7 24 438 455 436 457 0.91 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 HKR1-203 - 598 2.5e-11 43.1 84.9 10 14 0.34 2.4e+02 1.6 0.1 7 14 466 473 464 483 0.86 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 HKR1-203 - 598 2.5e-11 43.1 84.9 11 14 0.0023 1.6 8.5 0.3 7 24 494 511 491 513 0.91 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 HKR1-203 - 598 2.5e-11 43.1 84.9 12 14 0.0068 4.7 7.1 1.1 4 24 517 537 514 539 0.88 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 HKR1-203 - 598 2.5e-11 43.1 84.9 13 14 0.0032 2.2 8.1 1.4 7 24 548 565 545 567 0.92 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 HKR1-203 - 598 2.5e-11 43.1 84.9 14 14 0.0031 2.1 8.2 1.2 7 24 576 593 574 595 0.93 zinc-finger C2H2-type Zn-ribbon_8 PF09723.10 40 HKR1-203 - 598 7.4e-11 42.0 55.7 1 11 5.7e-05 0.039 14.1 0.8 6 34 240 275 239 280 0.89 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 HKR1-203 - 598 7.4e-11 42.0 55.7 2 11 0.00018 0.13 12.4 2.3 6 34 268 303 267 306 0.86 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 HKR1-203 - 598 7.4e-11 42.0 55.7 3 11 5.7e-05 0.039 14.1 2.1 6 34 296 331 295 337 0.89 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 HKR1-203 - 598 7.4e-11 42.0 55.7 4 11 0.0039 2.7 8.2 3.8 6 34 324 359 323 365 0.84 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 HKR1-203 - 598 7.4e-11 42.0 55.7 5 11 0.085 58 3.9 5.1 6 34 352 387 351 390 0.73 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 HKR1-203 - 598 7.4e-11 42.0 55.7 6 11 0.01 6.9 6.9 4.7 6 34 380 415 378 417 0.88 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 HKR1-203 - 598 7.4e-11 42.0 55.7 7 11 0.00075 0.52 10.5 3.0 6 38 408 447 407 449 0.88 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 HKR1-203 - 598 7.4e-11 42.0 55.7 8 11 0.00079 0.55 10.4 1.6 6 38 464 503 463 505 0.86 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 HKR1-203 - 598 7.4e-11 42.0 55.7 9 11 0.0005 0.34 11.0 1.9 6 38 518 557 517 559 0.85 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 HKR1-203 - 598 7.4e-11 42.0 55.7 10 11 0.0031 2.1 8.5 3.0 8 37 548 584 546 587 0.85 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 HKR1-203 - 598 7.4e-11 42.0 55.7 11 11 0.067 46 4.2 0.2 6 16 574 584 573 594 0.84 Zinc ribbon domain DUF3268 PF11672.8 118 HKR1-203 - 598 6.8e-09 36.1 37.0 1 7 0.00043 0.29 11.4 0.3 2 37 239 274 238 288 0.89 zinc-finger-containing domain DUF3268 PF11672.8 118 HKR1-203 - 598 6.8e-09 36.1 37.0 2 7 8.4e-05 0.058 13.7 0.7 2 43 295 336 294 341 0.87 zinc-finger-containing domain DUF3268 PF11672.8 118 HKR1-203 - 598 6.8e-09 36.1 37.0 3 7 0.36 2.5e+02 2.0 0.1 23 37 343 358 332 366 0.72 zinc-finger-containing domain DUF3268 PF11672.8 118 HKR1-203 - 598 6.8e-09 36.1 37.0 4 7 0.00047 0.32 11.3 1.4 2 44 379 421 378 430 0.86 zinc-finger-containing domain DUF3268 PF11672.8 118 HKR1-203 - 598 6.8e-09 36.1 37.0 5 7 0.016 11 6.4 0.3 2 37 435 470 434 478 0.91 zinc-finger-containing domain DUF3268 PF11672.8 118 HKR1-203 - 598 6.8e-09 36.1 37.0 6 7 0.019 13 6.1 0.4 3 37 492 524 490 531 0.87 zinc-finger-containing domain DUF3268 PF11672.8 118 HKR1-203 - 598 6.8e-09 36.1 37.0 7 7 0.0036 2.5 8.5 0.4 2 37 545 580 544 588 0.78 zinc-finger-containing domain zf-C2H2_jaz PF12171.8 27 HKR1-203 - 598 7.4e-08 32.5 43.3 1 13 0.077 53 4.3 0.0 7 20 55 68 53 69 0.90 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 HKR1-203 - 598 7.4e-08 32.5 43.3 2 13 0.3 2.1e+02 2.4 0.0 2 24 240 262 239 263 0.89 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 HKR1-203 - 598 7.4e-08 32.5 43.3 3 13 1.7 1.2e+03 -0.0 0.1 2 12 268 278 267 291 0.70 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 HKR1-203 - 598 7.4e-08 32.5 43.3 4 13 5 3.5e+03 -1.5 0.1 2 20 296 314 295 316 0.67 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 HKR1-203 - 598 7.4e-08 32.5 43.3 5 13 0.021 15 6.0 0.1 2 24 324 346 323 347 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 HKR1-203 - 598 7.4e-08 32.5 43.3 6 13 1.1 7.9e+02 0.5 0.2 2 24 352 374 351 374 0.89 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 HKR1-203 - 598 7.4e-08 32.5 43.3 7 13 0.0008 0.56 10.6 0.6 2 24 380 402 379 403 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 HKR1-203 - 598 7.4e-08 32.5 43.3 8 13 9.6 6.6e+03 -2.4 0.7 15 24 421 430 408 430 0.70 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 HKR1-203 - 598 7.4e-08 32.5 43.3 9 13 0.00049 0.34 11.2 0.0 2 24 436 458 435 459 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 HKR1-203 - 598 7.4e-08 32.5 43.3 10 13 0.00013 0.089 13.1 0.0 2 24 464 486 463 487 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 HKR1-203 - 598 7.4e-08 32.5 43.3 11 13 2.8 1.9e+03 -0.7 0.1 2 11 492 501 491 502 0.87 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 HKR1-203 - 598 7.4e-08 32.5 43.3 12 13 0.26 1.8e+02 2.6 0.2 2 24 546 568 545 569 0.89 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 HKR1-203 - 598 7.4e-08 32.5 43.3 13 13 0.049 34 4.9 0.1 2 24 574 596 573 597 0.88 Zinc-finger double-stranded RNA-binding ADK_lid PF05191.14 36 HKR1-203 - 598 1.8e-07 31.0 47.0 1 11 6.9 4.8e+03 -2.3 0.0 16 27 29 42 4 44 0.68 Adenylate kinase, active site lid ADK_lid PF05191.14 36 HKR1-203 - 598 1.8e-07 31.0 47.0 2 11 0.002 1.4 9.0 0.9 3 28 241 274 240 278 0.80 Adenylate kinase, active site lid ADK_lid PF05191.14 36 HKR1-203 - 598 1.8e-07 31.0 47.0 3 11 0.0017 1.2 9.2 1.8 3 29 269 303 268 305 0.78 Adenylate kinase, active site lid ADK_lid PF05191.14 36 HKR1-203 - 598 1.8e-07 31.0 47.0 4 11 0.011 7.4 6.6 0.1 3 15 297 309 296 316 0.82 Adenylate kinase, active site lid ADK_lid PF05191.14 36 HKR1-203 - 598 1.8e-07 31.0 47.0 5 11 0.0039 2.7 8.0 0.4 3 31 325 361 324 365 0.75 Adenylate kinase, active site lid ADK_lid PF05191.14 36 HKR1-203 - 598 1.8e-07 31.0 47.0 6 11 0.11 72 3.5 0.3 3 13 381 391 380 407 0.82 Adenylate kinase, active site lid ADK_lid PF05191.14 36 HKR1-203 - 598 1.8e-07 31.0 47.0 7 11 0.01 6.9 6.7 2.3 3 29 409 443 408 449 0.82 Adenylate kinase, active site lid ADK_lid PF05191.14 36 HKR1-203 - 598 1.8e-07 31.0 47.0 8 11 0.17 1.1e+02 2.8 0.1 3 11 437 445 436 453 0.84 Adenylate kinase, active site lid ADK_lid PF05191.14 36 HKR1-203 - 598 1.8e-07 31.0 47.0 9 11 0.00067 0.46 10.5 0.6 3 33 465 503 464 506 0.75 Adenylate kinase, active site lid ADK_lid PF05191.14 36 HKR1-203 - 598 1.8e-07 31.0 47.0 10 11 0.023 16 5.6 0.7 3 29 519 553 518 559 0.70 Adenylate kinase, active site lid ADK_lid PF05191.14 36 HKR1-203 - 598 1.8e-07 31.0 47.0 11 11 0.0074 5.1 7.2 0.2 3 15 575 587 574 593 0.81 Adenylate kinase, active site lid zinc_ribbon_15 PF17032.5 86 HKR1-203 - 598 2.1e-07 31.6 38.9 1 7 0.0063 4.4 8.1 0.2 36 75 238 277 226 286 0.84 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 HKR1-203 - 598 2.1e-07 31.6 38.9 2 7 0.0014 0.99 10.2 0.7 38 76 296 334 283 339 0.87 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 HKR1-203 - 598 2.1e-07 31.6 38.9 3 7 0.00082 0.57 11.0 0.8 35 76 349 390 336 395 0.86 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 HKR1-203 - 598 2.1e-07 31.6 38.9 4 7 0.026 18 6.2 1.7 38 77 408 447 399 454 0.84 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 HKR1-203 - 598 2.1e-07 31.6 38.9 5 7 0.0087 6 7.7 0.4 35 77 433 475 427 479 0.84 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 HKR1-203 - 598 2.1e-07 31.6 38.9 6 7 0.018 13 6.7 3.1 36 78 462 504 455 531 0.80 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 HKR1-203 - 598 2.1e-07 31.6 38.9 7 7 0.0041 2.8 8.7 3.2 29 78 537 586 518 589 0.81 zinc-ribbon family Zn_ribbon_SprT PF17283.2 38 HKR1-203 - 598 4.4e-07 29.7 62.7 1 10 0.05 34 4.4 0.2 21 32 232 247 228 252 0.82 SprT-like zinc ribbon domain Zn_ribbon_SprT PF17283.2 38 HKR1-203 - 598 4.4e-07 29.7 62.7 2 10 0.062 43 4.1 0.2 16 32 258 275 253 281 0.69 SprT-like zinc ribbon domain Zn_ribbon_SprT PF17283.2 38 HKR1-203 - 598 4.4e-07 29.7 62.7 3 10 0.0022 1.5 8.8 0.7 5 36 268 307 267 309 0.81 SprT-like zinc ribbon domain Zn_ribbon_SprT PF17283.2 38 HKR1-203 - 598 4.4e-07 29.7 62.7 4 10 0.12 85 3.2 0.5 24 35 319 334 312 337 0.64 SprT-like zinc ribbon domain Zn_ribbon_SprT PF17283.2 38 HKR1-203 - 598 4.4e-07 29.7 62.7 5 10 0.00017 0.11 12.4 3.1 5 37 324 364 323 365 0.92 SprT-like zinc ribbon domain Zn_ribbon_SprT PF17283.2 38 HKR1-203 - 598 4.4e-07 29.7 62.7 6 10 0.00036 0.25 11.3 3.8 5 37 380 420 379 421 0.95 SprT-like zinc ribbon domain Zn_ribbon_SprT PF17283.2 38 HKR1-203 - 598 4.4e-07 29.7 62.7 7 10 0.013 8.8 6.3 6.7 6 32 437 472 436 505 0.85 SprT-like zinc ribbon domain Zn_ribbon_SprT PF17283.2 38 HKR1-203 - 598 4.4e-07 29.7 62.7 8 10 0.78 5.4e+02 0.6 0.6 24 33 511 526 508 530 0.67 SprT-like zinc ribbon domain Zn_ribbon_SprT PF17283.2 38 HKR1-203 - 598 4.4e-07 29.7 62.7 9 10 0.23 1.6e+02 2.3 2.3 7 33 520 554 517 559 0.72 SprT-like zinc ribbon domain Zn_ribbon_SprT PF17283.2 38 HKR1-203 - 598 4.4e-07 29.7 62.7 10 10 0.0003 0.2 11.6 3.7 5 32 546 582 545 586 0.85 SprT-like zinc ribbon domain # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/HKR1-203.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/HKR1-203.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/HKR1-203.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/HKR1-203.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/HKR1-203.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:54:37 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-C2H2 PF00096.26 23 HKR1-204 - 386 6.1e-75 243.7 109.2 1 13 2e-07 0.00011 22.5 0.5 1 23 28 50 28 50 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 HKR1-204 - 386 6.1e-75 243.7 109.2 2 13 5.5e-08 3e-05 24.2 1.1 1 23 56 78 56 78 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 HKR1-204 - 386 6.1e-75 243.7 109.2 3 13 2.6e-08 1.4e-05 25.3 0.4 1 23 84 106 84 106 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 HKR1-204 - 386 6.1e-75 243.7 109.2 4 13 1.1e-07 6.2e-05 23.2 5.0 1 23 112 134 112 134 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 HKR1-204 - 386 6.1e-75 243.7 109.2 5 13 9.3e-08 5e-05 23.5 1.9 1 23 140 162 140 162 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 HKR1-204 - 386 6.1e-75 243.7 109.2 6 13 1.9e-07 0.0001 22.6 3.1 1 23 168 190 168 190 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 HKR1-204 - 386 6.1e-75 243.7 109.2 7 13 9.3e-08 5.1e-05 23.5 2.6 1 23 196 218 196 218 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 HKR1-204 - 386 6.1e-75 243.7 109.2 8 13 7e-09 3.8e-06 27.1 1.5 1 23 224 246 224 246 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 HKR1-204 - 386 6.1e-75 243.7 109.2 9 13 1.5e-08 8.1e-06 26.0 0.2 1 23 252 274 252 274 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 HKR1-204 - 386 6.1e-75 243.7 109.2 10 13 9.8e-07 0.00053 20.3 2.4 1 23 280 302 280 302 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 HKR1-204 - 386 6.1e-75 243.7 109.2 11 13 1.4e-05 0.0078 16.6 0.8 1 23 306 328 306 328 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 HKR1-204 - 386 6.1e-75 243.7 109.2 12 13 1.1e-08 5.8e-06 26.5 3.6 1 23 334 356 334 356 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 HKR1-204 - 386 6.1e-75 243.7 109.2 13 13 1.4e-09 7.5e-07 29.3 1.7 1 23 362 384 362 384 0.98 Zinc finger, C2H2 type zf-H2C2_2 PF13465.6 26 HKR1-204 - 386 2.8e-71 233.0 85.3 1 14 0.00019 0.1 13.0 0.3 7 25 20 38 20 38 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 HKR1-204 - 386 2.8e-71 233.0 85.3 2 14 1.5e-08 8.1e-06 26.0 0.2 1 25 42 66 42 66 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 HKR1-204 - 386 2.8e-71 233.0 85.3 3 14 2.3e-07 0.00012 22.3 0.5 1 25 70 94 70 94 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 HKR1-204 - 386 2.8e-71 233.0 85.3 4 14 8e-08 4.3e-05 23.7 0.1 1 24 98 121 98 123 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 HKR1-204 - 386 2.8e-71 233.0 85.3 5 14 7.7e-08 4.2e-05 23.8 1.1 1 25 126 150 126 151 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 HKR1-204 - 386 2.8e-71 233.0 85.3 6 14 8.3e-10 4.5e-07 30.0 2.6 1 24 154 177 154 178 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 HKR1-204 - 386 2.8e-71 233.0 85.3 7 14 3e-07 0.00016 21.9 1.1 1 24 182 205 182 206 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 HKR1-204 - 386 2.8e-71 233.0 85.3 8 14 4.7e-11 2.5e-08 34.0 0.6 1 26 210 235 210 235 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 HKR1-204 - 386 2.8e-71 233.0 85.3 9 14 3.8e-08 2.1e-05 24.7 0.1 2 25 239 262 238 263 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 HKR1-204 - 386 2.8e-71 233.0 85.3 10 14 1.5e-07 8.1e-05 22.9 0.5 3 25 268 290 267 291 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 HKR1-204 - 386 2.8e-71 233.0 85.3 11 14 0.048 26 5.5 0.3 1 24 294 315 294 315 0.89 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 HKR1-204 - 386 2.8e-71 233.0 85.3 12 14 0.00012 0.064 13.7 0.2 2 25 321 344 320 345 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 HKR1-204 - 386 2.8e-71 233.0 85.3 13 14 7.8e-08 4.2e-05 23.8 1.2 1 25 348 372 348 373 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 HKR1-204 - 386 2.8e-71 233.0 85.3 14 14 0.15 81 3.9 0.3 1 11 376 386 376 386 0.91 Zinc-finger double domain zf-C2H2_4 PF13894.6 24 HKR1-204 - 386 4.1e-48 157.8 102.2 1 13 5.9e-05 0.032 15.1 0.4 1 23 28 50 28 51 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 HKR1-204 - 386 4.1e-48 157.8 102.2 2 13 6.9e-05 0.038 14.8 0.9 1 23 56 78 56 79 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 HKR1-204 - 386 4.1e-48 157.8 102.2 3 13 5e-06 0.0027 18.4 0.5 1 23 84 106 84 107 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 HKR1-204 - 386 4.1e-48 157.8 102.2 4 13 3.9e-05 0.021 15.6 3.9 1 23 112 134 112 135 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 HKR1-204 - 386 4.1e-48 157.8 102.2 5 13 2e-06 0.0011 19.6 1.4 1 23 140 162 140 163 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 HKR1-204 - 386 4.1e-48 157.8 102.2 6 13 5.2e-05 0.028 15.2 2.6 1 23 168 190 168 191 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 HKR1-204 - 386 4.1e-48 157.8 102.2 7 13 0.00013 0.071 14.0 2.6 1 23 196 218 196 219 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 HKR1-204 - 386 4.1e-48 157.8 102.2 8 13 7.7e-07 0.00042 20.9 1.0 1 23 224 246 224 247 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 HKR1-204 - 386 4.1e-48 157.8 102.2 9 13 6.7e-06 0.0036 18.0 0.2 1 23 252 274 252 275 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 HKR1-204 - 386 4.1e-48 157.8 102.2 10 13 8.4e-06 0.0046 17.7 1.7 1 23 280 302 280 303 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 HKR1-204 - 386 4.1e-48 157.8 102.2 11 13 7.8e-05 0.042 14.7 0.7 1 23 306 328 306 329 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 HKR1-204 - 386 4.1e-48 157.8 102.2 12 13 1e-05 0.0056 17.4 2.9 1 23 334 356 334 357 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 HKR1-204 - 386 4.1e-48 157.8 102.2 13 13 5.8e-07 0.00031 21.3 0.9 1 23 362 384 362 385 0.96 C2H2-type zinc finger zf-trcl PF13451.6 48 HKR1-204 - 386 2.7e-14 52.8 48.3 1 13 0.0008 0.44 10.5 0.1 3 17 26 40 25 42 0.90 Probable zinc-ribbon domain zf-trcl PF13451.6 48 HKR1-204 - 386 2.7e-14 52.8 48.3 2 13 9e-05 0.049 13.5 0.1 3 17 54 68 52 70 0.89 Probable zinc-ribbon domain zf-trcl PF13451.6 48 HKR1-204 - 386 2.7e-14 52.8 48.3 3 13 0.013 7.1 6.6 0.1 3 14 82 93 82 96 0.91 Probable zinc-ribbon domain zf-trcl PF13451.6 48 HKR1-204 - 386 2.7e-14 52.8 48.3 4 13 0.03 16 5.5 0.0 3 14 110 121 108 122 0.88 Probable zinc-ribbon domain zf-trcl PF13451.6 48 HKR1-204 - 386 2.7e-14 52.8 48.3 5 13 0.13 70 3.4 0.1 3 14 138 149 136 150 0.86 Probable zinc-ribbon domain zf-trcl PF13451.6 48 HKR1-204 - 386 2.7e-14 52.8 48.3 6 13 0.0015 0.8 9.6 0.0 3 17 166 180 164 183 0.89 Probable zinc-ribbon domain zf-trcl PF13451.6 48 HKR1-204 - 386 2.7e-14 52.8 48.3 7 13 0.56 3.1e+02 1.4 0.5 3 14 194 205 194 208 0.87 Probable zinc-ribbon domain zf-trcl PF13451.6 48 HKR1-204 - 386 2.7e-14 52.8 48.3 8 13 0.018 9.8 6.2 0.1 3 15 222 234 220 236 0.90 Probable zinc-ribbon domain zf-trcl PF13451.6 48 HKR1-204 - 386 2.7e-14 52.8 48.3 9 13 0.035 19 5.2 0.1 3 14 250 261 248 262 0.88 Probable zinc-ribbon domain zf-trcl PF13451.6 48 HKR1-204 - 386 2.7e-14 52.8 48.3 10 13 0.027 14 5.6 0.1 3 14 278 289 276 290 0.90 Probable zinc-ribbon domain zf-trcl PF13451.6 48 HKR1-204 - 386 2.7e-14 52.8 48.3 11 13 0.23 1.3e+02 2.6 1.3 5 14 306 315 304 316 0.87 Probable zinc-ribbon domain zf-trcl PF13451.6 48 HKR1-204 - 386 2.7e-14 52.8 48.3 12 13 0.11 60 3.7 0.1 3 14 332 343 331 344 0.85 Probable zinc-ribbon domain zf-trcl PF13451.6 48 HKR1-204 - 386 2.7e-14 52.8 48.3 13 13 0.057 31 4.6 0.0 3 14 360 371 358 372 0.88 Probable zinc-ribbon domain zf-C2H2_11 PF16622.5 29 HKR1-204 - 386 3.3e-12 46.0 80.2 1 13 0.0082 4.5 7.1 0.1 7 17 30 40 28 48 0.80 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 HKR1-204 - 386 3.3e-12 46.0 80.2 2 13 0.074 40 4.1 0.2 7 17 58 68 56 76 0.81 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 HKR1-204 - 386 3.3e-12 46.0 80.2 3 13 0.23 1.2e+02 2.5 0.3 7 17 86 96 84 104 0.79 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 HKR1-204 - 386 3.3e-12 46.0 80.2 4 13 0.014 7.7 6.4 1.1 7 23 114 130 111 133 0.90 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 HKR1-204 - 386 3.3e-12 46.0 80.2 5 13 0.085 46 3.9 1.8 7 25 142 160 140 162 0.94 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 HKR1-204 - 386 3.3e-12 46.0 80.2 6 13 0.0023 1.2 8.9 0.2 7 23 170 186 167 189 0.89 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 HKR1-204 - 386 3.3e-12 46.0 80.2 7 13 1.9e-05 0.01 15.6 1.9 7 24 198 215 196 216 0.94 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 HKR1-204 - 386 3.3e-12 46.0 80.2 8 13 0.0012 0.63 9.8 0.5 7 24 226 243 224 245 0.91 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 HKR1-204 - 386 3.3e-12 46.0 80.2 9 13 0.26 1.4e+02 2.3 0.1 7 14 254 261 252 271 0.86 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 HKR1-204 - 386 3.3e-12 46.0 80.2 10 13 0.0018 0.97 9.3 0.3 7 24 282 299 279 301 0.91 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 HKR1-204 - 386 3.3e-12 46.0 80.2 11 13 0.0051 2.8 7.8 1.1 4 24 305 325 302 327 0.88 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 HKR1-204 - 386 3.3e-12 46.0 80.2 12 13 0.0024 1.3 8.8 1.4 7 24 336 353 333 355 0.92 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 HKR1-204 - 386 3.3e-12 46.0 80.2 13 13 0.0023 1.3 8.9 1.2 7 24 364 381 362 383 0.93 zinc-finger C2H2-type Zn-ribbon_8 PF09723.10 40 HKR1-204 - 386 5e-12 45.7 57.9 1 12 5.5e-05 0.03 14.5 1.1 6 34 28 63 27 66 0.89 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 HKR1-204 - 386 5e-12 45.7 57.9 2 12 9.3e-05 0.05 13.7 1.9 6 34 56 91 54 96 0.86 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 HKR1-204 - 386 5e-12 45.7 57.9 3 12 6.5e-05 0.035 14.2 2.7 6 34 84 119 81 124 0.89 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 HKR1-204 - 386 5e-12 45.7 57.9 4 12 0.0031 1.7 8.8 3.9 6 34 112 147 111 153 0.84 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 HKR1-204 - 386 5e-12 45.7 57.9 5 12 0.037 20 5.4 4.5 6 34 140 175 139 180 0.74 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 HKR1-204 - 386 5e-12 45.7 57.9 6 12 0.0017 0.91 9.7 2.5 6 34 168 203 166 203 0.87 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 HKR1-204 - 386 5e-12 45.7 57.9 7 12 0.00064 0.35 11.0 3.3 6 38 196 235 193 237 0.88 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 HKR1-204 - 386 5e-12 45.7 57.9 8 12 0.025 14 5.9 0.2 6 19 224 237 223 246 0.78 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 HKR1-204 - 386 5e-12 45.7 57.9 9 12 0.00075 0.41 10.8 2.0 6 38 252 291 251 293 0.86 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 HKR1-204 - 386 5e-12 45.7 57.9 10 12 0.00057 0.31 11.2 2.6 6 38 306 345 305 347 0.85 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 HKR1-204 - 386 5e-12 45.7 57.9 11 12 0.002 1.1 9.4 2.9 8 37 336 372 334 375 0.85 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 HKR1-204 - 386 5e-12 45.7 57.9 12 12 0.05 27 5.0 0.2 6 16 362 372 360 382 0.84 Zinc ribbon domain DUF3268 PF11672.8 118 HKR1-204 - 386 2.4e-10 40.8 37.6 1 7 0.0003 0.16 12.3 0.4 2 37 27 62 26 78 0.89 zinc-finger-containing domain DUF3268 PF11672.8 118 HKR1-204 - 386 2.4e-10 40.8 37.6 2 7 6.1e-05 0.033 14.5 0.8 2 44 83 125 82 131 0.87 zinc-finger-containing domain DUF3268 PF11672.8 118 HKR1-204 - 386 2.4e-10 40.8 37.6 3 7 0.26 1.4e+02 2.8 0.1 22 37 130 146 120 155 0.72 zinc-finger-containing domain DUF3268 PF11672.8 118 HKR1-204 - 386 2.4e-10 40.8 37.6 4 7 0.00033 0.18 12.2 1.4 2 44 167 209 166 219 0.86 zinc-finger-containing domain DUF3268 PF11672.8 118 HKR1-204 - 386 2.4e-10 40.8 37.6 5 7 0.012 6.3 7.2 0.3 2 37 223 258 222 266 0.91 zinc-finger-containing domain DUF3268 PF11672.8 118 HKR1-204 - 386 2.4e-10 40.8 37.6 6 7 0.014 7.7 6.9 0.5 3 37 280 312 277 320 0.87 zinc-finger-containing domain DUF3268 PF11672.8 118 HKR1-204 - 386 2.4e-10 40.8 37.6 7 7 0.0026 1.4 9.3 0.4 2 37 333 368 332 376 0.78 zinc-finger-containing domain ADK_lid PF05191.14 36 HKR1-204 - 386 3.9e-09 36.3 47.4 1 12 0.0017 0.94 9.5 1.1 3 28 29 62 28 66 0.80 Adenylate kinase, active site lid ADK_lid PF05191.14 36 HKR1-204 - 386 3.9e-09 36.3 47.4 2 12 0.00086 0.47 10.5 1.6 3 30 57 92 56 95 0.78 Adenylate kinase, active site lid ADK_lid PF05191.14 36 HKR1-204 - 386 3.9e-09 36.3 47.4 3 12 0.0076 4.1 7.5 0.1 3 15 85 97 83 107 0.84 Adenylate kinase, active site lid ADK_lid PF05191.14 36 HKR1-204 - 386 3.9e-09 36.3 47.4 4 12 0.0052 2.8 8.0 1.3 3 31 113 149 112 153 0.75 Adenylate kinase, active site lid ADK_lid PF05191.14 36 HKR1-204 - 386 3.9e-09 36.3 47.4 5 12 0.085 46 4.1 0.3 3 12 169 178 168 193 0.81 Adenylate kinase, active site lid ADK_lid PF05191.14 36 HKR1-204 - 386 3.9e-09 36.3 47.4 6 12 0.0068 3.7 7.6 2.2 3 29 197 231 196 237 0.82 Adenylate kinase, active site lid ADK_lid PF05191.14 36 HKR1-204 - 386 3.9e-09 36.3 47.4 7 12 0.12 63 3.7 0.1 3 12 225 234 224 243 0.82 Adenylate kinase, active site lid ADK_lid PF05191.14 36 HKR1-204 - 386 3.9e-09 36.3 47.4 8 12 0.0005 0.27 11.2 0.6 3 33 253 291 252 293 0.75 Adenylate kinase, active site lid ADK_lid PF05191.14 36 HKR1-204 - 386 3.9e-09 36.3 47.4 9 12 0.44 2.4e+02 1.8 0.1 3 12 281 290 280 299 0.76 Adenylate kinase, active site lid ADK_lid PF05191.14 36 HKR1-204 - 386 3.9e-09 36.3 47.4 10 12 0.016 8.4 6.5 0.6 3 29 307 341 306 347 0.70 Adenylate kinase, active site lid ADK_lid PF05191.14 36 HKR1-204 - 386 3.9e-09 36.3 47.4 11 12 0.28 1.5e+02 2.4 0.1 3 12 335 344 334 351 0.81 Adenylate kinase, active site lid ADK_lid PF05191.14 36 HKR1-204 - 386 3.9e-09 36.3 47.4 12 12 0.0057 3.1 7.9 0.2 3 15 363 375 362 381 0.81 Adenylate kinase, active site lid XPA_N PF01286.18 32 HKR1-204 - 386 1.2e-08 34.8 39.8 1 13 0.081 44 4.2 0.0 3 12 29 38 27 46 0.86 XPA protein N-terminal XPA_N PF01286.18 32 HKR1-204 - 386 1.2e-08 34.8 39.8 2 13 0.16 86 3.3 0.0 3 12 57 66 55 74 0.78 XPA protein N-terminal XPA_N PF01286.18 32 HKR1-204 - 386 1.2e-08 34.8 39.8 3 13 0.031 17 5.6 0.1 3 12 85 94 83 102 0.82 XPA protein N-terminal XPA_N PF01286.18 32 HKR1-204 - 386 1.2e-08 34.8 39.8 4 13 0.068 37 4.5 0.0 3 12 113 122 111 130 0.83 XPA protein N-terminal XPA_N PF01286.18 32 HKR1-204 - 386 1.2e-08 34.8 39.8 5 13 0.082 45 4.2 0.1 3 12 141 150 139 158 0.83 XPA protein N-terminal XPA_N PF01286.18 32 HKR1-204 - 386 1.2e-08 34.8 39.8 6 13 0.18 98 3.1 0.0 3 11 169 177 167 179 0.87 XPA protein N-terminal XPA_N PF01286.18 32 HKR1-204 - 386 1.2e-08 34.8 39.8 7 13 0.16 86 3.3 0.5 3 11 197 205 195 211 0.87 XPA protein N-terminal XPA_N PF01286.18 32 HKR1-204 - 386 1.2e-08 34.8 39.8 8 13 0.11 59 3.8 0.1 3 12 225 234 224 242 0.80 XPA protein N-terminal XPA_N PF01286.18 32 HKR1-204 - 386 1.2e-08 34.8 39.8 9 13 0.05 27 4.9 0.0 3 13 253 263 251 270 0.87 XPA protein N-terminal XPA_N PF01286.18 32 HKR1-204 - 386 1.2e-08 34.8 39.8 10 13 0.12 63 3.7 0.3 4 12 282 290 280 291 0.87 XPA protein N-terminal XPA_N PF01286.18 32 HKR1-204 - 386 1.2e-08 34.8 39.8 11 13 0.098 53 4.0 1.1 3 12 307 316 305 317 0.89 XPA protein N-terminal XPA_N PF01286.18 32 HKR1-204 - 386 1.2e-08 34.8 39.8 12 13 0.028 15 5.7 0.0 3 12 335 344 333 352 0.82 XPA protein N-terminal XPA_N PF01286.18 32 HKR1-204 - 386 1.2e-08 34.8 39.8 13 13 0.28 1.5e+02 2.5 0.0 3 12 363 372 361 378 0.88 XPA protein N-terminal zinc_ribbon_15 PF17032.5 86 HKR1-204 - 386 1.4e-08 35.4 40.0 1 9 0.0049 2.6 8.8 0.2 36 74 26 64 14 71 0.83 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 HKR1-204 - 386 1.4e-08 35.4 40.0 2 9 0.001 0.55 11.0 0.7 38 76 84 122 71 129 0.87 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 HKR1-204 - 386 1.4e-08 35.4 40.0 3 9 0.00061 0.33 11.7 0.8 35 76 137 178 127 184 0.86 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 HKR1-204 - 386 1.4e-08 35.4 40.0 4 9 0.0034 1.8 9.3 1.2 29 74 159 204 153 214 0.83 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 HKR1-204 - 386 1.4e-08 35.4 40.0 5 9 0.019 10 7.0 1.8 38 77 196 235 185 242 0.84 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 HKR1-204 - 386 1.4e-08 35.4 40.0 6 9 0.0067 3.6 8.4 0.7 35 78 221 264 212 270 0.85 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 HKR1-204 - 386 1.4e-08 35.4 40.0 7 9 0.0022 1.2 9.9 0.4 35 77 249 291 239 296 0.86 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 HKR1-204 - 386 1.4e-08 35.4 40.0 8 9 0.033 18 6.2 1.1 33 74 275 314 267 320 0.71 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 HKR1-204 - 386 1.4e-08 35.4 40.0 9 9 0.004 2.2 9.1 3.6 28 78 324 374 306 377 0.81 zinc-ribbon family Zn_ribbon_SprT PF17283.2 38 HKR1-204 - 386 1.6e-08 34.3 65.0 1 10 0.038 21 5.2 0.2 21 32 20 35 16 40 0.82 SprT-like zinc ribbon domain Zn_ribbon_SprT PF17283.2 38 HKR1-204 - 386 1.6e-08 34.3 65.0 2 10 0.053 29 4.7 0.2 16 32 46 63 42 68 0.67 SprT-like zinc ribbon domain Zn_ribbon_SprT PF17283.2 38 HKR1-204 - 386 1.6e-08 34.3 65.0 3 10 0.0016 0.85 9.6 0.7 5 36 56 95 55 97 0.81 SprT-like zinc ribbon domain Zn_ribbon_SprT PF17283.2 38 HKR1-204 - 386 1.6e-08 34.3 65.0 4 10 0.092 50 3.9 0.5 24 35 107 122 100 125 0.64 SprT-like zinc ribbon domain Zn_ribbon_SprT PF17283.2 38 HKR1-204 - 386 1.6e-08 34.3 65.0 5 10 0.00011 0.061 13.2 3.0 5 37 112 152 111 153 0.92 SprT-like zinc ribbon domain Zn_ribbon_SprT PF17283.2 38 HKR1-204 - 386 1.6e-08 34.3 65.0 6 10 0.00045 0.24 11.3 4.6 5 37 168 208 167 209 0.95 SprT-like zinc ribbon domain Zn_ribbon_SprT PF17283.2 38 HKR1-204 - 386 1.6e-08 34.3 65.0 7 10 0.013 7.3 6.6 7.3 6 32 225 260 224 293 0.85 SprT-like zinc ribbon domain Zn_ribbon_SprT PF17283.2 38 HKR1-204 - 386 1.6e-08 34.3 65.0 8 10 0.62 3.4e+02 1.3 0.7 24 33 299 314 296 319 0.68 SprT-like zinc ribbon domain Zn_ribbon_SprT PF17283.2 38 HKR1-204 - 386 1.6e-08 34.3 65.0 9 10 0.26 1.4e+02 2.5 2.7 7 33 308 342 305 346 0.74 SprT-like zinc ribbon domain Zn_ribbon_SprT PF17283.2 38 HKR1-204 - 386 1.6e-08 34.3 65.0 10 10 0.00028 0.15 12.0 4.1 5 32 334 370 333 374 0.85 SprT-like zinc ribbon domain zf-C2H2_jaz PF12171.8 27 HKR1-204 - 386 4e-08 33.3 43.9 1 12 0.23 1.2e+02 3.1 0.0 2 24 28 50 27 51 0.89 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 HKR1-204 - 386 4e-08 33.3 43.9 2 12 1.3 7e+02 0.7 0.1 2 12 56 66 55 79 0.70 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 HKR1-204 - 386 4e-08 33.3 43.9 3 12 3.8 2.1e+03 -0.8 0.1 2 20 84 102 83 104 0.67 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 HKR1-204 - 386 4e-08 33.3 43.9 4 12 0.016 8.8 6.8 0.1 2 24 112 134 111 135 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 HKR1-204 - 386 4e-08 33.3 43.9 5 12 0.87 4.7e+02 1.2 0.2 2 24 140 162 139 162 0.89 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 HKR1-204 - 386 4e-08 33.3 43.9 6 12 0.0006 0.33 11.3 0.6 2 24 168 190 167 191 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 HKR1-204 - 386 4e-08 33.3 43.9 7 12 7.5 4e+03 -1.7 0.7 15 24 209 218 196 218 0.70 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 HKR1-204 - 386 4e-08 33.3 43.9 8 12 0.00037 0.2 12.0 0.0 2 24 224 246 223 247 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 HKR1-204 - 386 4e-08 33.3 43.9 9 12 9.7e-05 0.053 13.8 0.0 2 24 252 274 251 275 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 HKR1-204 - 386 4e-08 33.3 43.9 10 12 2.2 1.2e+03 -0.0 0.1 2 11 280 289 279 290 0.87 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 HKR1-204 - 386 4e-08 33.3 43.9 11 12 0.2 1.1e+02 3.3 0.2 2 24 334 356 333 357 0.89 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 HKR1-204 - 386 4e-08 33.3 43.9 12 12 0.037 20 5.6 0.1 2 24 362 384 361 385 0.88 Zinc-finger double-stranded RNA-binding zf-C2H2_6 PF13912.6 27 HKR1-204 - 386 2.6e-07 30.5 102.7 1 13 0.0012 0.67 10.0 0.3 2 25 28 51 28 53 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 HKR1-204 - 386 2.6e-07 30.5 102.7 2 13 0.01 5.5 7.1 0.9 2 24 56 78 56 80 0.95 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 HKR1-204 - 386 2.6e-07 30.5 102.7 3 13 0.00016 0.085 12.9 0.7 2 24 84 106 84 109 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 HKR1-204 - 386 2.6e-07 30.5 102.7 4 13 0.047 25 5.0 3.6 2 25 112 135 112 137 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 HKR1-204 - 386 2.6e-07 30.5 102.7 5 13 0.18 98 3.1 1.2 2 24 140 162 140 165 0.90 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 HKR1-204 - 386 2.6e-07 30.5 102.7 6 13 0.0025 1.3 9.1 2.2 2 25 168 191 168 193 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 HKR1-204 - 386 2.6e-07 30.5 102.7 7 13 0.27 1.5e+02 2.6 3.1 2 24 196 218 196 221 0.91 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 HKR1-204 - 386 2.6e-07 30.5 102.7 8 13 0.0019 1 9.4 1.0 2 25 224 247 224 249 0.91 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 HKR1-204 - 386 2.6e-07 30.5 102.7 9 13 0.012 6.8 6.8 0.2 2 25 252 275 252 277 0.87 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 HKR1-204 - 386 2.6e-07 30.5 102.7 10 13 0.0011 0.6 10.2 0.6 3 24 281 302 280 304 0.92 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 HKR1-204 - 386 2.6e-07 30.5 102.7 11 13 0.69 3.8e+02 1.3 0.1 1 11 305 315 305 315 0.83 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 HKR1-204 - 386 2.6e-07 30.5 102.7 12 13 0.0035 1.9 8.6 3.0 2 25 334 357 334 359 0.95 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 HKR1-204 - 386 2.6e-07 30.5 102.7 13 13 0.0027 1.5 8.9 0.8 2 24 362 384 362 386 0.95 C2H2-type zinc finger # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/HKR1-204.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/HKR1-204.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/HKR1-204.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/HKR1-204.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/HKR1-204.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:54:38 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/HKR1-205.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/HKR1-205.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/HKR1-205.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/HKR1-205.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/HKR1-205.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:54:38 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/HKR1-206.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/HKR1-206.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/HKR1-206.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/HKR1-206.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/HKR1-206.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:54:39 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/HKR1-207.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/HKR1-207.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/HKR1-207.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/HKR1-207.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/HKR1-207.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:54:39 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/HKR1-208.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/HKR1-208.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/HKR1-208.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/HKR1-208.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/HKR1-208.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:54:39 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/HKR1-209.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/HKR1-209.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/HKR1-209.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/HKR1-209.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/HKR1-209.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:54:40 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-C2H2 PF00096.26 23 HKR1-210 - 581 4.2e-73 238.0 110.6 1 14 0.39 2.8e+02 2.3 0.0 6 19 38 51 36 52 0.91 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 HKR1-210 - 581 4.2e-73 238.0 110.6 2 14 2.4e-07 0.00017 21.8 0.5 1 23 223 245 223 245 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 HKR1-210 - 581 4.2e-73 238.0 110.6 3 14 6.8e-08 4.9e-05 23.6 1.1 1 23 251 273 251 273 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 HKR1-210 - 581 4.2e-73 238.0 110.6 4 14 3.2e-08 2.3e-05 24.6 0.4 1 23 279 301 279 301 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 HKR1-210 - 581 4.2e-73 238.0 110.6 5 14 1.4e-07 0.0001 22.6 5.0 1 23 307 329 307 329 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 HKR1-210 - 581 4.2e-73 238.0 110.6 6 14 1.2e-07 8.3e-05 22.8 1.9 1 23 335 357 335 357 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 HKR1-210 - 581 4.2e-73 238.0 110.6 7 14 2.3e-07 0.00017 21.9 3.1 1 23 363 385 363 385 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 HKR1-210 - 581 4.2e-73 238.0 110.6 8 14 1.2e-07 8.3e-05 22.8 2.6 1 23 391 413 391 413 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 HKR1-210 - 581 4.2e-73 238.0 110.6 9 14 8.7e-09 6.2e-06 26.4 1.5 1 23 419 441 419 441 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 HKR1-210 - 581 4.2e-73 238.0 110.6 10 14 1.9e-08 1.3e-05 25.3 0.2 1 23 447 469 447 469 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 HKR1-210 - 581 4.2e-73 238.0 110.6 11 14 1.2e-06 0.00087 19.6 2.4 1 23 475 497 475 497 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 HKR1-210 - 581 4.2e-73 238.0 110.6 12 14 1.8e-05 0.013 15.9 0.8 1 23 501 523 501 523 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 HKR1-210 - 581 4.2e-73 238.0 110.6 13 14 1.3e-08 9.5e-06 25.8 3.6 1 23 529 551 529 551 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 HKR1-210 - 581 4.2e-73 238.0 110.6 14 14 1.7e-09 1.2e-06 28.6 1.7 1 23 557 579 557 579 0.98 Zinc finger, C2H2 type zf-H2C2_2 PF13465.6 26 HKR1-210 - 581 5e-67 219.5 92.2 1 15 2.7 1.9e+03 -0.4 0.0 7 15 187 195 186 198 0.84 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 HKR1-210 - 581 5e-67 219.5 92.2 2 15 0.00023 0.17 12.4 0.3 7 25 215 233 215 233 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 HKR1-210 - 581 5e-67 219.5 92.2 3 15 1.9e-08 1.3e-05 25.4 0.2 1 25 237 261 237 261 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 HKR1-210 - 581 5e-67 219.5 92.2 4 15 2.8e-07 0.0002 21.6 0.5 1 25 265 289 265 289 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 HKR1-210 - 581 5e-67 219.5 92.2 5 15 9.9e-08 7.1e-05 23.1 0.1 1 24 293 316 293 318 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 HKR1-210 - 581 5e-67 219.5 92.2 6 15 9.6e-08 6.9e-05 23.1 1.1 1 25 321 345 321 346 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 HKR1-210 - 581 5e-67 219.5 92.2 7 15 1e-09 7.4e-07 29.3 2.6 1 24 349 372 349 373 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 HKR1-210 - 581 5e-67 219.5 92.2 8 15 3.8e-07 0.00027 21.2 1.1 1 24 377 400 377 401 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 HKR1-210 - 581 5e-67 219.5 92.2 9 15 5.8e-11 4.2e-08 33.3 0.6 1 26 405 430 405 430 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 HKR1-210 - 581 5e-67 219.5 92.2 10 15 4.8e-08 3.4e-05 24.1 0.1 2 25 434 457 433 458 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 HKR1-210 - 581 5e-67 219.5 92.2 11 15 1.9e-07 0.00013 22.2 0.5 3 25 463 485 462 486 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 HKR1-210 - 581 5e-67 219.5 92.2 12 15 0.059 43 4.8 0.3 1 24 489 510 489 510 0.89 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 HKR1-210 - 581 5e-67 219.5 92.2 13 15 0.00015 0.1 13.0 0.2 2 25 516 539 515 540 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 HKR1-210 - 581 5e-67 219.5 92.2 14 15 9.7e-08 6.9e-05 23.1 1.2 1 25 543 567 543 568 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 HKR1-210 - 581 5e-67 219.5 92.2 15 15 0.18 1.3e+02 3.3 0.3 1 11 571 581 571 581 0.90 Zinc-finger double domain zf-C2H2_4 PF13894.6 24 HKR1-210 - 581 3.1e-47 155.1 106.0 1 14 0.0093 6.7 7.8 0.1 4 24 36 56 35 56 0.89 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 HKR1-210 - 581 3.1e-47 155.1 106.0 2 14 7.4e-05 0.053 14.4 0.4 1 23 223 245 223 246 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 HKR1-210 - 581 3.1e-47 155.1 106.0 3 14 8.7e-05 0.062 14.2 0.9 1 23 251 273 251 274 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 HKR1-210 - 581 3.1e-47 155.1 106.0 4 14 6.3e-06 0.0045 17.7 0.5 1 23 279 301 279 302 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 HKR1-210 - 581 3.1e-47 155.1 106.0 5 14 4.9e-05 0.035 14.9 3.9 1 23 307 329 307 330 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 HKR1-210 - 581 3.1e-47 155.1 106.0 6 14 2.5e-06 0.0018 18.9 1.4 1 23 335 357 335 358 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 HKR1-210 - 581 3.1e-47 155.1 106.0 7 14 6.4e-05 0.046 14.6 2.6 1 23 363 385 363 386 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 HKR1-210 - 581 3.1e-47 155.1 106.0 8 14 0.00016 0.12 13.3 2.6 1 23 391 413 391 414 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 HKR1-210 - 581 3.1e-47 155.1 106.0 9 14 9.7e-07 0.00069 20.2 1.0 1 23 419 441 419 442 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 HKR1-210 - 581 3.1e-47 155.1 106.0 10 14 8.4e-06 0.006 17.3 0.2 1 23 447 469 447 470 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 HKR1-210 - 581 3.1e-47 155.1 106.0 11 14 1.1e-05 0.0076 17.0 1.7 1 23 475 497 475 498 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 HKR1-210 - 581 3.1e-47 155.1 106.0 12 14 9.7e-05 0.07 14.0 0.7 1 23 501 523 501 524 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 HKR1-210 - 581 3.1e-47 155.1 106.0 13 14 1.3e-05 0.0093 16.7 2.9 1 23 529 551 529 552 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 HKR1-210 - 581 3.1e-47 155.1 106.0 14 14 7.2e-07 0.00052 20.6 0.9 1 23 557 579 557 580 0.96 C2H2-type zinc finger zf-trcl PF13451.6 48 HKR1-210 - 581 8.1e-12 44.9 48.3 1 13 0.00097 0.7 9.8 0.1 3 17 221 235 220 237 0.90 Probable zinc-ribbon domain zf-trcl PF13451.6 48 HKR1-210 - 581 8.1e-12 44.9 48.3 2 13 0.00011 0.078 12.9 0.1 3 17 249 263 247 265 0.89 Probable zinc-ribbon domain zf-trcl PF13451.6 48 HKR1-210 - 581 8.1e-12 44.9 48.3 3 13 0.016 11 6.0 0.1 3 14 277 288 277 291 0.91 Probable zinc-ribbon domain zf-trcl PF13451.6 48 HKR1-210 - 581 8.1e-12 44.9 48.3 4 13 0.036 26 4.8 0.0 3 14 305 316 303 317 0.88 Probable zinc-ribbon domain zf-trcl PF13451.6 48 HKR1-210 - 581 8.1e-12 44.9 48.3 5 13 0.15 1.1e+02 2.8 0.1 3 14 333 344 331 345 0.86 Probable zinc-ribbon domain zf-trcl PF13451.6 48 HKR1-210 - 581 8.1e-12 44.9 48.3 6 13 0.0018 1.3 9.0 0.0 3 17 361 375 359 378 0.89 Probable zinc-ribbon domain zf-trcl PF13451.6 48 HKR1-210 - 581 8.1e-12 44.9 48.3 7 13 0.68 4.8e+02 0.7 0.5 3 14 389 400 389 403 0.87 Probable zinc-ribbon domain zf-trcl PF13451.6 48 HKR1-210 - 581 8.1e-12 44.9 48.3 8 13 0.022 16 5.5 0.1 3 15 417 429 415 431 0.90 Probable zinc-ribbon domain zf-trcl PF13451.6 48 HKR1-210 - 581 8.1e-12 44.9 48.3 9 13 0.042 30 4.6 0.1 3 14 445 456 443 457 0.88 Probable zinc-ribbon domain zf-trcl PF13451.6 48 HKR1-210 - 581 8.1e-12 44.9 48.3 10 13 0.032 23 5.0 0.1 3 14 473 484 471 485 0.90 Probable zinc-ribbon domain zf-trcl PF13451.6 48 HKR1-210 - 581 8.1e-12 44.9 48.3 11 13 0.28 2e+02 2.0 1.3 5 14 501 510 499 511 0.87 Probable zinc-ribbon domain zf-trcl PF13451.6 48 HKR1-210 - 581 8.1e-12 44.9 48.3 12 13 0.13 94 3.0 0.1 3 14 527 538 526 539 0.85 Probable zinc-ribbon domain zf-trcl PF13451.6 48 HKR1-210 - 581 8.1e-12 44.9 48.3 13 13 0.068 49 3.9 0.0 3 14 555 566 553 567 0.88 Probable zinc-ribbon domain zf-C2H2_11 PF16622.5 29 HKR1-210 - 581 1.6e-11 43.7 84.9 1 14 0.0015 1.1 9.1 0.1 10 28 38 56 36 56 0.93 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 HKR1-210 - 581 1.6e-11 43.7 84.9 2 14 0.0099 7.1 6.5 0.1 7 17 225 235 223 243 0.80 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 HKR1-210 - 581 1.6e-11 43.7 84.9 3 14 0.09 64 3.4 0.2 7 17 253 263 251 271 0.81 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 HKR1-210 - 581 1.6e-11 43.7 84.9 4 14 0.27 2e+02 1.9 0.3 7 17 281 291 279 299 0.79 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 HKR1-210 - 581 1.6e-11 43.7 84.9 5 14 0.017 12 5.7 1.1 7 23 309 325 306 328 0.90 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 HKR1-210 - 581 1.6e-11 43.7 84.9 6 14 0.1 74 3.2 1.8 7 25 337 355 335 357 0.94 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 HKR1-210 - 581 1.6e-11 43.7 84.9 7 14 0.0033 2.4 8.0 0.3 7 23 365 381 363 384 0.89 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 HKR1-210 - 581 1.6e-11 43.7 84.9 8 14 2.3e-05 0.016 14.9 1.9 7 24 393 410 391 411 0.94 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 HKR1-210 - 581 1.6e-11 43.7 84.9 9 14 0.0014 1 9.2 0.5 7 24 421 438 419 440 0.91 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 HKR1-210 - 581 1.6e-11 43.7 84.9 10 14 0.32 2.3e+02 1.7 0.1 7 14 449 456 447 466 0.86 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 HKR1-210 - 581 1.6e-11 43.7 84.9 11 14 0.0022 1.6 8.6 0.3 7 24 477 494 474 496 0.91 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 HKR1-210 - 581 1.6e-11 43.7 84.9 12 14 0.0063 4.5 7.1 1.1 4 24 500 520 497 522 0.88 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 HKR1-210 - 581 1.6e-11 43.7 84.9 13 14 0.003 2.1 8.2 1.4 7 24 531 548 528 550 0.92 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 HKR1-210 - 581 1.6e-11 43.7 84.9 14 14 0.0029 2 8.2 1.2 7 24 559 576 557 578 0.93 zinc-finger C2H2-type Zn-ribbon_8 PF09723.10 40 HKR1-210 - 581 6.6e-11 42.1 55.9 1 11 6.4e-05 0.046 13.9 1.0 6 34 223 258 222 261 0.89 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 HKR1-210 - 581 6.6e-11 42.1 55.9 2 11 0.00018 0.13 12.4 2.3 6 34 251 286 250 289 0.86 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 HKR1-210 - 581 6.6e-11 42.1 55.9 3 11 5.9e-05 0.042 14.0 2.2 6 34 279 314 278 319 0.89 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 HKR1-210 - 581 6.6e-11 42.1 55.9 4 11 0.0034 2.4 8.3 3.7 6 34 307 342 306 349 0.85 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 HKR1-210 - 581 6.6e-11 42.1 55.9 5 11 0.072 52 4.1 5.0 6 34 335 370 334 373 0.73 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 HKR1-210 - 581 6.6e-11 42.1 55.9 6 11 0.0022 1.6 8.9 2.5 6 34 363 398 361 398 0.87 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 HKR1-210 - 581 6.6e-11 42.1 55.9 7 11 0.00075 0.54 10.4 3.1 6 38 391 430 389 432 0.88 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 HKR1-210 - 581 6.6e-11 42.1 55.9 8 11 0.00073 0.53 10.5 1.6 6 38 447 486 446 488 0.86 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 HKR1-210 - 581 6.6e-11 42.1 55.9 9 11 0.00047 0.34 11.1 2.0 6 38 501 540 500 542 0.85 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 HKR1-210 - 581 6.6e-11 42.1 55.9 10 11 0.0029 2.1 8.6 3.1 8 37 531 567 529 570 0.85 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 HKR1-210 - 581 6.6e-11 42.1 55.9 11 11 0.062 45 4.3 0.2 6 16 557 567 556 577 0.84 Zinc ribbon domain DUF3268 PF11672.8 118 HKR1-210 - 581 5.6e-09 36.4 37.1 1 7 0.00039 0.28 11.5 0.3 2 37 222 257 221 272 0.89 zinc-finger-containing domain DUF3268 PF11672.8 118 HKR1-210 - 581 5.6e-09 36.4 37.1 2 7 7.7e-05 0.055 13.8 0.7 2 43 278 319 277 324 0.87 zinc-finger-containing domain DUF3268 PF11672.8 118 HKR1-210 - 581 5.6e-09 36.4 37.1 3 7 0.33 2.4e+02 2.1 0.1 23 37 326 341 315 349 0.72 zinc-finger-containing domain DUF3268 PF11672.8 118 HKR1-210 - 581 5.6e-09 36.4 37.1 4 7 0.00043 0.31 11.4 1.4 2 44 362 404 361 413 0.86 zinc-finger-containing domain DUF3268 PF11672.8 118 HKR1-210 - 581 5.6e-09 36.4 37.1 5 7 0.014 9.9 6.5 0.3 2 37 418 453 417 468 0.91 zinc-finger-containing domain DUF3268 PF11672.8 118 HKR1-210 - 581 5.6e-09 36.4 37.1 6 7 0.018 13 6.2 0.4 3 37 475 507 473 515 0.87 zinc-finger-containing domain DUF3268 PF11672.8 118 HKR1-210 - 581 5.6e-09 36.4 37.1 7 7 0.0033 2.4 8.5 0.4 2 37 528 563 527 571 0.78 zinc-finger-containing domain zf-C2H2_jaz PF12171.8 27 HKR1-210 - 581 5.1e-08 33.0 43.3 1 13 0.072 51 4.3 0.0 7 20 38 51 36 52 0.90 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 HKR1-210 - 581 5.1e-08 33.0 43.3 2 13 0.28 2e+02 2.4 0.0 2 24 223 245 222 246 0.89 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 HKR1-210 - 581 5.1e-08 33.0 43.3 3 13 1.6 1.1e+03 0.0 0.1 2 12 251 261 250 274 0.70 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 HKR1-210 - 581 5.1e-08 33.0 43.3 4 13 4.7 3.3e+03 -1.5 0.1 2 20 279 297 278 299 0.67 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 HKR1-210 - 581 5.1e-08 33.0 43.3 5 13 0.02 14 6.1 0.1 2 24 307 329 306 330 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 HKR1-210 - 581 5.1e-08 33.0 43.3 6 13 1.1 7.7e+02 0.6 0.2 2 24 335 357 334 357 0.89 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 HKR1-210 - 581 5.1e-08 33.0 43.3 7 13 0.00075 0.54 10.6 0.6 2 24 363 385 362 386 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 HKR1-210 - 581 5.1e-08 33.0 43.3 8 13 8.9 6.4e+03 -2.4 0.7 15 24 404 413 391 413 0.70 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 HKR1-210 - 581 5.1e-08 33.0 43.3 9 13 0.00046 0.33 11.3 0.0 2 24 419 441 418 442 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 HKR1-210 - 581 5.1e-08 33.0 43.3 10 13 0.00012 0.086 13.2 0.0 2 24 447 469 446 470 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 HKR1-210 - 581 5.1e-08 33.0 43.3 11 13 2.6 1.9e+03 -0.7 0.1 2 11 475 484 474 485 0.87 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 HKR1-210 - 581 5.1e-08 33.0 43.3 12 13 0.24 1.7e+02 2.6 0.2 2 24 529 551 528 552 0.89 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 HKR1-210 - 581 5.1e-08 33.0 43.3 13 13 0.045 33 4.9 0.1 2 24 557 579 556 580 0.88 Zinc-finger double-stranded RNA-binding ADK_lid PF05191.14 36 HKR1-210 - 581 6.3e-08 32.5 45.1 1 10 0.0019 1.4 9.0 0.9 3 28 224 257 223 261 0.80 Adenylate kinase, active site lid ADK_lid PF05191.14 36 HKR1-210 - 581 6.3e-08 32.5 45.1 2 10 0.0018 1.3 9.1 2.0 3 29 252 286 251 288 0.78 Adenylate kinase, active site lid ADK_lid PF05191.14 36 HKR1-210 - 581 6.3e-08 32.5 45.1 3 10 0.0088 6.3 6.9 0.1 3 15 280 292 279 306 0.83 Adenylate kinase, active site lid ADK_lid PF05191.14 36 HKR1-210 - 581 6.3e-08 32.5 45.1 4 10 0.0038 2.7 8.0 0.5 3 31 308 344 307 348 0.75 Adenylate kinase, active site lid ADK_lid PF05191.14 36 HKR1-210 - 581 6.3e-08 32.5 45.1 5 10 0.098 70 3.5 0.3 3 13 364 374 363 390 0.82 Adenylate kinase, active site lid ADK_lid PF05191.14 36 HKR1-210 - 581 6.3e-08 32.5 45.1 6 10 0.009 6.5 6.8 2.2 3 29 392 426 391 432 0.82 Adenylate kinase, active site lid ADK_lid PF05191.14 36 HKR1-210 - 581 6.3e-08 32.5 45.1 7 10 0.15 1e+02 3.0 0.1 3 11 420 428 419 437 0.83 Adenylate kinase, active site lid ADK_lid PF05191.14 36 HKR1-210 - 581 6.3e-08 32.5 45.1 8 10 0.00061 0.44 10.6 0.6 3 33 448 486 447 489 0.75 Adenylate kinase, active site lid ADK_lid PF05191.14 36 HKR1-210 - 581 6.3e-08 32.5 45.1 9 10 0.02 14 5.7 0.6 3 29 502 536 501 542 0.70 Adenylate kinase, active site lid ADK_lid PF05191.14 36 HKR1-210 - 581 6.3e-08 32.5 45.1 10 10 0.0069 4.9 7.2 0.2 3 15 558 570 557 576 0.81 Adenylate kinase, active site lid zinc_ribbon_15 PF17032.5 86 HKR1-210 - 581 1.6e-07 32.0 38.8 1 7 0.006 4.3 8.1 0.2 36 75 221 260 209 267 0.83 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 HKR1-210 - 581 1.6e-07 32.0 38.8 2 7 0.0014 0.97 10.2 0.7 38 76 279 317 266 322 0.87 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 HKR1-210 - 581 1.6e-07 32.0 38.8 3 7 0.00076 0.54 11.0 0.8 35 76 332 373 319 378 0.86 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 HKR1-210 - 581 1.6e-07 32.0 38.8 4 7 0.025 18 6.2 1.7 38 77 391 430 382 437 0.84 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 HKR1-210 - 581 1.6e-07 32.0 38.8 5 7 0.0081 5.8 7.7 0.4 35 77 416 458 410 462 0.84 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 HKR1-210 - 581 1.6e-07 32.0 38.8 6 7 0.019 14 6.5 3.3 36 78 445 487 437 513 0.81 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 HKR1-210 - 581 1.6e-07 32.0 38.8 7 7 0.0037 2.6 8.8 3.1 29 78 520 569 501 572 0.81 zinc-ribbon family Zn_ribbon_SprT PF17283.2 38 HKR1-210 - 581 2.7e-07 30.4 62.4 1 10 0.046 33 4.5 0.2 21 32 215 230 211 235 0.82 SprT-like zinc ribbon domain Zn_ribbon_SprT PF17283.2 38 HKR1-210 - 581 2.7e-07 30.4 62.4 2 10 0.061 44 4.1 0.2 16 32 241 258 237 264 0.68 SprT-like zinc ribbon domain Zn_ribbon_SprT PF17283.2 38 HKR1-210 - 581 2.7e-07 30.4 62.4 3 10 0.002 1.4 8.9 0.7 5 36 251 290 250 292 0.81 SprT-like zinc ribbon domain Zn_ribbon_SprT PF17283.2 38 HKR1-210 - 581 2.7e-07 30.4 62.4 4 10 0.11 82 3.2 0.5 24 35 302 317 295 320 0.64 SprT-like zinc ribbon domain Zn_ribbon_SprT PF17283.2 38 HKR1-210 - 581 2.7e-07 30.4 62.4 5 10 0.00016 0.11 12.4 3.1 5 37 307 347 306 348 0.92 SprT-like zinc ribbon domain Zn_ribbon_SprT PF17283.2 38 HKR1-210 - 581 2.7e-07 30.4 62.4 6 10 0.00034 0.24 11.3 3.8 5 37 363 403 362 404 0.95 SprT-like zinc ribbon domain Zn_ribbon_SprT PF17283.2 38 HKR1-210 - 581 2.7e-07 30.4 62.4 7 10 0.012 8.4 6.4 6.7 6 32 420 455 419 488 0.85 SprT-like zinc ribbon domain Zn_ribbon_SprT PF17283.2 38 HKR1-210 - 581 2.7e-07 30.4 62.4 8 10 0.71 5.1e+02 0.7 0.5 24 33 494 509 491 513 0.67 SprT-like zinc ribbon domain Zn_ribbon_SprT PF17283.2 38 HKR1-210 - 581 2.7e-07 30.4 62.4 9 10 0.22 1.6e+02 2.3 2.2 7 33 503 537 501 542 0.70 SprT-like zinc ribbon domain Zn_ribbon_SprT PF17283.2 38 HKR1-210 - 581 2.7e-07 30.4 62.4 10 10 0.00027 0.19 11.6 3.7 5 32 529 565 528 569 0.85 SprT-like zinc ribbon domain # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/HKR1-210.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/HKR1-210.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/HKR1-210.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/HKR1-210.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/HKR1-210.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:54:40 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/HKR1-211.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/HKR1-211.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/HKR1-211.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/HKR1-211.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/HKR1-211.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:54:41 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/HKR1-212.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/HKR1-212.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/HKR1-212.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/HKR1-212.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/HKR1-212.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:54:41 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-C2H2 PF00096.26 23 HKR1-213 - 641 1.8e-72 235.9 110.6 1 14 0.47 3.1e+02 2.1 0.0 6 19 98 111 96 112 0.91 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 HKR1-213 - 641 1.8e-72 235.9 110.6 2 14 2.9e-07 0.0002 21.7 0.5 1 23 283 305 283 305 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 HKR1-213 - 641 1.8e-72 235.9 110.6 3 14 8.2e-08 5.5e-05 23.4 1.1 1 23 311 333 311 333 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 HKR1-213 - 641 1.8e-72 235.9 110.6 4 14 3.9e-08 2.6e-05 24.4 0.4 1 23 339 361 339 361 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 HKR1-213 - 641 1.8e-72 235.9 110.6 5 14 1.7e-07 0.00011 22.4 5.0 1 23 367 389 367 389 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 HKR1-213 - 641 1.8e-72 235.9 110.6 6 14 1.4e-07 9.3e-05 22.7 1.9 1 23 395 417 395 417 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 HKR1-213 - 641 1.8e-72 235.9 110.6 7 14 2.8e-07 0.00019 21.7 3.1 1 23 423 445 423 445 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 HKR1-213 - 641 1.8e-72 235.9 110.6 8 14 1.4e-07 9.3e-05 22.7 2.6 1 23 451 473 451 473 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 HKR1-213 - 641 1.8e-72 235.9 110.6 9 14 1.1e-08 7e-06 26.2 1.5 1 23 479 501 479 501 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 HKR1-213 - 641 1.8e-72 235.9 110.6 10 14 2.3e-08 1.5e-05 25.2 0.2 1 23 507 529 507 529 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 HKR1-213 - 641 1.8e-72 235.9 110.6 11 14 1.5e-06 0.00097 19.5 2.4 1 23 535 557 535 557 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 HKR1-213 - 641 1.8e-72 235.9 110.6 12 14 2.2e-05 0.014 15.8 0.8 1 23 561 583 561 583 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 HKR1-213 - 641 1.8e-72 235.9 110.6 13 14 1.6e-08 1.1e-05 25.6 3.6 1 23 589 611 589 611 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 HKR1-213 - 641 1.8e-72 235.9 110.6 14 14 2.1e-09 1.4e-06 28.4 1.7 1 23 617 639 617 639 0.98 Zinc finger, C2H2 type zf-H2C2_2 PF13465.6 26 HKR1-213 - 641 3.4e-65 213.8 96.4 1 15 3.2 2.1e+03 -0.6 0.0 7 15 247 255 246 258 0.84 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 HKR1-213 - 641 3.4e-65 213.8 96.4 2 15 0.00028 0.19 12.2 0.3 7 25 275 293 275 293 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 HKR1-213 - 641 3.4e-65 213.8 96.4 3 15 2.3e-08 1.5e-05 25.2 0.2 1 25 297 321 297 321 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 HKR1-213 - 641 3.4e-65 213.8 96.4 4 15 3.4e-07 0.00023 21.5 0.5 1 25 325 349 325 349 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 HKR1-213 - 641 3.4e-65 213.8 96.4 5 15 1.2e-07 8e-05 22.9 0.1 1 24 353 376 353 378 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 HKR1-213 - 641 3.4e-65 213.8 96.4 6 15 1.2e-07 7.8e-05 22.9 1.1 1 25 381 405 381 406 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 HKR1-213 - 641 3.4e-65 213.8 96.4 7 15 1.2e-09 8.3e-07 29.2 2.6 1 24 409 432 409 433 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 HKR1-213 - 641 3.4e-65 213.8 96.4 8 15 4.6e-07 0.0003 21.1 1.1 1 24 437 460 437 461 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 HKR1-213 - 641 3.4e-65 213.8 96.4 9 15 7e-11 4.7e-08 33.1 0.6 1 26 465 490 465 490 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 HKR1-213 - 641 3.4e-65 213.8 96.4 10 15 5.8e-08 3.9e-05 23.9 0.1 2 25 494 517 493 518 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 HKR1-213 - 641 3.4e-65 213.8 96.4 11 15 2.2e-07 0.00015 22.0 0.5 3 25 523 545 522 546 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 HKR1-213 - 641 3.4e-65 213.8 96.4 12 15 0.072 48 4.6 0.3 1 24 549 570 549 570 0.89 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 HKR1-213 - 641 3.4e-65 213.8 96.4 13 15 0.00018 0.12 12.9 0.2 2 25 576 599 575 600 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 HKR1-213 - 641 3.4e-65 213.8 96.4 14 15 1.2e-07 7.8e-05 22.9 1.2 1 25 603 627 603 628 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 HKR1-213 - 641 3.4e-65 213.8 96.4 15 15 0.21 1.4e+02 3.1 0.3 1 11 631 641 631 641 0.90 Zinc-finger double domain zf-C2H2_4 PF13894.6 24 HKR1-213 - 641 1.3e-46 153.2 106.0 1 14 0.011 7.5 7.7 0.1 4 24 96 116 95 116 0.89 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 HKR1-213 - 641 1.3e-46 153.2 106.0 2 14 9e-05 0.06 14.2 0.4 1 23 283 305 283 306 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 HKR1-213 - 641 1.3e-46 153.2 106.0 3 14 0.00011 0.07 14.0 0.9 1 23 311 333 311 334 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 HKR1-213 - 641 1.3e-46 153.2 106.0 4 14 7.7e-06 0.0051 17.5 0.5 1 23 339 361 339 362 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 HKR1-213 - 641 1.3e-46 153.2 106.0 5 14 6e-05 0.04 14.8 3.9 1 23 367 389 367 390 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 HKR1-213 - 641 1.3e-46 153.2 106.0 6 14 3e-06 0.002 18.8 1.4 1 23 395 417 395 418 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 HKR1-213 - 641 1.3e-46 153.2 106.0 7 14 7.8e-05 0.052 14.4 2.6 1 23 423 445 423 446 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 HKR1-213 - 641 1.3e-46 153.2 106.0 8 14 0.0002 0.13 13.1 2.6 1 23 451 473 451 474 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 HKR1-213 - 641 1.3e-46 153.2 106.0 9 14 1.2e-06 0.00078 20.1 1.0 1 23 479 501 479 502 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 HKR1-213 - 641 1.3e-46 153.2 106.0 10 14 1e-05 0.0068 17.2 0.2 1 23 507 529 507 530 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 HKR1-213 - 641 1.3e-46 153.2 106.0 11 14 1.3e-05 0.0085 16.9 1.7 1 23 535 557 535 558 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 HKR1-213 - 641 1.3e-46 153.2 106.0 12 14 0.00012 0.078 13.9 0.7 1 23 561 583 561 584 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 HKR1-213 - 641 1.3e-46 153.2 106.0 13 14 1.6e-05 0.01 16.6 2.9 1 23 589 611 589 612 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 HKR1-213 - 641 1.3e-46 153.2 106.0 14 14 8.7e-07 0.00058 20.5 0.9 1 23 617 639 617 640 0.96 C2H2-type zinc finger KRAB PF01352.27 42 HKR1-213 - 641 3.8e-24 84.0 0.3 1 2 2.3e-26 1.5e-23 82.2 0.1 2 42 14 54 13 54 0.98 KRAB box KRAB PF01352.27 42 HKR1-213 - 641 3.8e-24 84.0 0.3 2 2 3.5 2.3e+03 -1.7 0.0 21 40 103 122 100 122 0.84 KRAB box zf-trcl PF13451.6 48 HKR1-213 - 641 2.4e-11 43.3 47.9 1 13 0.0012 0.78 9.7 0.1 3 17 281 295 280 297 0.90 Probable zinc-ribbon domain zf-trcl PF13451.6 48 HKR1-213 - 641 2.4e-11 43.3 47.9 2 13 0.00013 0.087 12.7 0.1 3 17 309 323 307 325 0.89 Probable zinc-ribbon domain zf-trcl PF13451.6 48 HKR1-213 - 641 2.4e-11 43.3 47.9 3 13 0.019 13 5.8 0.1 3 14 337 348 337 351 0.91 Probable zinc-ribbon domain zf-trcl PF13451.6 48 HKR1-213 - 641 2.4e-11 43.3 47.9 4 13 0.043 28 4.7 0.0 3 14 365 376 363 377 0.88 Probable zinc-ribbon domain zf-trcl PF13451.6 48 HKR1-213 - 641 2.4e-11 43.3 47.9 5 13 0.19 1.2e+02 2.6 0.1 3 14 393 404 391 405 0.86 Probable zinc-ribbon domain zf-trcl PF13451.6 48 HKR1-213 - 641 2.4e-11 43.3 47.9 6 13 0.0022 1.4 8.8 0.0 3 17 421 435 419 438 0.89 Probable zinc-ribbon domain zf-trcl PF13451.6 48 HKR1-213 - 641 2.4e-11 43.3 47.9 7 13 0.81 5.4e+02 0.6 0.5 3 14 449 460 449 463 0.87 Probable zinc-ribbon domain zf-trcl PF13451.6 48 HKR1-213 - 641 2.4e-11 43.3 47.9 8 13 0.027 18 5.3 0.1 3 15 477 489 475 490 0.89 Probable zinc-ribbon domain zf-trcl PF13451.6 48 HKR1-213 - 641 2.4e-11 43.3 47.9 9 13 0.051 34 4.4 0.1 3 14 505 516 503 517 0.88 Probable zinc-ribbon domain zf-trcl PF13451.6 48 HKR1-213 - 641 2.4e-11 43.3 47.9 10 13 0.038 25 4.8 0.1 3 14 533 544 531 545 0.90 Probable zinc-ribbon domain zf-trcl PF13451.6 48 HKR1-213 - 641 2.4e-11 43.3 47.9 11 13 0.33 2.2e+02 1.8 1.3 5 14 561 570 559 571 0.87 Probable zinc-ribbon domain zf-trcl PF13451.6 48 HKR1-213 - 641 2.4e-11 43.3 47.9 12 13 0.16 1e+02 2.9 0.1 3 14 587 598 586 599 0.85 Probable zinc-ribbon domain zf-trcl PF13451.6 48 HKR1-213 - 641 2.4e-11 43.3 47.9 13 13 0.082 55 3.8 0.0 3 14 615 626 613 627 0.88 Probable zinc-ribbon domain zf-C2H2_11 PF16622.5 29 HKR1-213 - 641 7.4e-11 41.6 84.9 1 14 0.0018 1.2 9.0 0.1 10 28 98 116 96 116 0.93 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 HKR1-213 - 641 7.4e-11 41.6 84.9 2 14 0.012 8 6.3 0.1 7 17 285 295 283 303 0.80 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 HKR1-213 - 641 7.4e-11 41.6 84.9 3 14 0.11 72 3.3 0.2 7 17 313 323 311 331 0.81 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 HKR1-213 - 641 7.4e-11 41.6 84.9 4 14 0.33 2.2e+02 1.7 0.3 7 17 341 351 339 359 0.79 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 HKR1-213 - 641 7.4e-11 41.6 84.9 5 14 0.021 14 5.6 1.1 7 23 369 385 366 388 0.90 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 HKR1-213 - 641 7.4e-11 41.6 84.9 6 14 0.13 83 3.1 1.8 7 25 397 415 395 417 0.94 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 HKR1-213 - 641 7.4e-11 41.6 84.9 7 14 0.004 2.7 7.8 0.3 7 23 425 441 423 444 0.89 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 HKR1-213 - 641 7.4e-11 41.6 84.9 8 14 2.7e-05 0.018 14.8 1.9 7 24 453 470 451 471 0.94 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 HKR1-213 - 641 7.4e-11 41.6 84.9 9 14 0.0017 1.1 9.0 0.5 7 24 481 498 479 500 0.91 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 HKR1-213 - 641 7.4e-11 41.6 84.9 10 14 0.38 2.5e+02 1.5 0.1 7 14 509 516 507 526 0.86 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 HKR1-213 - 641 7.4e-11 41.6 84.9 11 14 0.0026 1.7 8.4 0.3 7 24 537 554 534 556 0.91 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 HKR1-213 - 641 7.4e-11 41.6 84.9 12 14 0.0077 5.1 6.9 1.1 4 24 560 580 557 582 0.88 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 HKR1-213 - 641 7.4e-11 41.6 84.9 13 14 0.0036 2.4 8.0 1.4 7 24 591 608 588 610 0.92 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 HKR1-213 - 641 7.4e-11 41.6 84.9 14 14 0.0035 2.3 8.1 1.2 7 24 619 636 617 638 0.93 zinc-finger C2H2-type Zn-ribbon_8 PF09723.10 40 HKR1-213 - 641 1.6e-10 40.9 55.8 1 10 6.7e-05 0.045 13.9 0.8 6 34 283 318 282 321 0.89 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 HKR1-213 - 641 1.6e-10 40.9 55.8 2 10 0.00014 0.093 12.9 1.9 6 34 311 346 310 351 0.86 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 HKR1-213 - 641 1.6e-10 40.9 55.8 3 10 7.5e-05 0.05 13.7 2.2 6 34 339 374 338 379 0.89 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 HKR1-213 - 641 1.6e-10 40.9 55.8 4 10 0.0039 2.6 8.2 3.6 6 34 367 402 366 408 0.84 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 HKR1-213 - 641 1.6e-10 40.9 55.8 5 10 0.088 58 3.9 5.0 6 34 395 430 394 433 0.73 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 HKR1-213 - 641 1.6e-10 40.9 55.8 6 10 0.04 27 5.0 8.9 6 34 451 486 421 492 0.71 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 HKR1-213 - 641 1.6e-10 40.9 55.8 7 10 0.00095 0.63 10.2 1.7 6 38 507 546 506 548 0.86 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 HKR1-213 - 641 1.6e-10 40.9 55.8 8 10 0.00054 0.36 11.0 1.9 6 38 561 600 560 602 0.85 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 HKR1-213 - 641 1.6e-10 40.9 55.8 9 10 0.0036 2.4 8.4 3.1 8 37 591 627 589 630 0.85 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 HKR1-213 - 641 1.6e-10 40.9 55.8 10 10 0.076 50 4.1 0.2 6 16 617 627 616 637 0.84 Zinc ribbon domain DUF3268 PF11672.8 118 HKR1-213 - 641 1.1e-08 35.4 36.9 1 7 0.00048 0.32 11.3 0.3 2 37 282 317 281 331 0.89 zinc-finger-containing domain DUF3268 PF11672.8 118 HKR1-213 - 641 1.1e-08 35.4 36.9 2 7 9.4e-05 0.062 13.6 0.9 2 44 338 380 337 389 0.87 zinc-finger-containing domain DUF3268 PF11672.8 118 HKR1-213 - 641 1.1e-08 35.4 36.9 3 7 0.42 2.8e+02 1.8 0.1 23 37 386 401 376 409 0.72 zinc-finger-containing domain DUF3268 PF11672.8 118 HKR1-213 - 641 1.1e-08 35.4 36.9 4 7 0.00053 0.35 11.2 1.4 2 44 422 464 421 473 0.86 zinc-finger-containing domain DUF3268 PF11672.8 118 HKR1-213 - 641 1.1e-08 35.4 36.9 5 7 0.018 12 6.2 0.3 2 37 478 513 477 521 0.91 zinc-finger-containing domain DUF3268 PF11672.8 118 HKR1-213 - 641 1.1e-08 35.4 36.9 6 7 0.021 14 6.0 0.4 3 37 535 567 533 574 0.87 zinc-finger-containing domain DUF3268 PF11672.8 118 HKR1-213 - 641 1.1e-08 35.4 36.9 7 7 0.004 2.7 8.4 0.4 2 37 588 623 587 631 0.78 zinc-finger-containing domain zf-C2H2_jaz PF12171.8 27 HKR1-213 - 641 1.8e-07 31.3 43.3 1 12 0.086 57 4.2 0.0 7 20 98 111 96 112 0.90 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 HKR1-213 - 641 1.8e-07 31.3 43.3 2 12 0.34 2.3e+02 2.3 0.0 2 24 283 305 282 306 0.89 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 HKR1-213 - 641 1.8e-07 31.3 43.3 3 12 1.9 1.3e+03 -0.1 0.1 2 12 311 321 310 334 0.70 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 HKR1-213 - 641 1.8e-07 31.3 43.3 4 12 5.6 3.7e+03 -1.6 0.1 2 20 339 357 338 359 0.66 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 HKR1-213 - 641 1.8e-07 31.3 43.3 5 12 0.024 16 5.9 0.1 2 24 367 389 366 390 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 HKR1-213 - 641 1.8e-07 31.3 43.3 6 12 1.3 8.6e+02 0.4 0.2 2 24 395 417 394 417 0.89 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 HKR1-213 - 641 1.8e-07 31.3 43.3 7 12 0.00091 0.6 10.5 0.6 2 24 423 445 422 446 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 HKR1-213 - 641 1.8e-07 31.3 43.3 8 12 0.00056 0.37 11.1 0.0 2 24 479 501 478 502 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 HKR1-213 - 641 1.8e-07 31.3 43.3 9 12 0.00014 0.096 13.0 0.0 2 24 507 529 506 530 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 HKR1-213 - 641 1.8e-07 31.3 43.3 10 12 3.1 2.1e+03 -0.8 0.1 2 11 535 544 534 545 0.87 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 HKR1-213 - 641 1.8e-07 31.3 43.3 11 12 0.29 1.9e+02 2.5 0.2 2 24 589 611 588 612 0.89 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 HKR1-213 - 641 1.8e-07 31.3 43.3 12 12 0.055 36 4.8 0.1 2 24 617 639 616 640 0.88 Zinc-finger double-stranded RNA-binding zinc_ribbon_15 PF17032.5 86 HKR1-213 - 641 2.9e-07 31.1 38.6 1 8 0.0074 4.9 8.0 0.2 36 75 281 320 269 327 0.83 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 HKR1-213 - 641 2.9e-07 31.1 38.6 2 8 0.0016 1.1 10.1 0.6 38 76 339 377 326 382 0.87 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 HKR1-213 - 641 2.9e-07 31.1 38.6 3 8 0.00095 0.63 10.8 0.8 35 76 392 433 382 439 0.86 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 HKR1-213 - 641 2.9e-07 31.1 38.6 4 8 0.03 20 6.0 1.7 38 77 451 490 442 497 0.84 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 HKR1-213 - 641 2.9e-07 31.1 38.6 5 8 0.0092 6.1 7.7 0.3 35 78 476 519 470 525 0.84 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 HKR1-213 - 641 2.9e-07 31.1 38.6 6 8 0.0036 2.4 9.0 0.4 35 78 504 547 496 553 0.86 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 HKR1-213 - 641 2.9e-07 31.1 38.6 7 8 0.04 26 5.6 0.8 33 74 530 569 522 576 0.71 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 HKR1-213 - 641 2.9e-07 31.1 38.6 8 8 0.0042 2.8 8.8 3.0 29 78 580 629 561 632 0.81 zinc-ribbon family ADK_lid PF05191.14 36 HKR1-213 - 641 3.6e-07 30.0 47.0 1 11 6 4e+03 -2.1 0.0 16 27 71 84 46 87 0.69 Adenylate kinase, active site lid ADK_lid PF05191.14 36 HKR1-213 - 641 3.6e-07 30.0 47.0 2 11 0.0024 1.6 8.8 0.9 3 28 284 317 283 321 0.80 Adenylate kinase, active site lid ADK_lid PF05191.14 36 HKR1-213 - 641 3.6e-07 30.0 47.0 3 11 0.0015 1 9.4 1.9 3 30 312 347 311 352 0.78 Adenylate kinase, active site lid ADK_lid PF05191.14 36 HKR1-213 - 641 3.6e-07 30.0 47.0 4 11 0.012 8.1 6.5 0.1 3 15 340 352 339 359 0.82 Adenylate kinase, active site lid ADK_lid PF05191.14 36 HKR1-213 - 641 3.6e-07 30.0 47.0 5 11 0.0045 3 7.9 0.5 3 31 368 404 367 408 0.75 Adenylate kinase, active site lid ADK_lid PF05191.14 36 HKR1-213 - 641 3.6e-07 30.0 47.0 6 11 0.12 78 3.4 0.3 3 13 424 434 423 450 0.82 Adenylate kinase, active site lid ADK_lid PF05191.14 36 HKR1-213 - 641 3.6e-07 30.0 47.0 7 11 0.011 7.6 6.6 2.3 3 29 452 486 451 492 0.82 Adenylate kinase, active site lid ADK_lid PF05191.14 36 HKR1-213 - 641 3.6e-07 30.0 47.0 8 11 0.19 1.2e+02 2.7 0.1 3 11 480 488 479 496 0.84 Adenylate kinase, active site lid ADK_lid PF05191.14 36 HKR1-213 - 641 3.6e-07 30.0 47.0 9 11 0.00074 0.49 10.4 0.6 3 33 508 546 507 549 0.75 Adenylate kinase, active site lid ADK_lid PF05191.14 36 HKR1-213 - 641 3.6e-07 30.0 47.0 10 11 0.024 16 5.6 0.6 3 29 562 596 561 602 0.70 Adenylate kinase, active site lid ADK_lid PF05191.14 36 HKR1-213 - 641 3.6e-07 30.0 47.0 11 11 0.0083 5.5 7.1 0.2 3 15 618 630 617 636 0.81 Adenylate kinase, active site lid Zn_ribbon_SprT PF17283.2 38 HKR1-213 - 641 4e-07 29.8 61.5 1 10 0.051 34 4.5 0.1 21 32 275 290 271 296 0.81 SprT-like zinc ribbon domain Zn_ribbon_SprT PF17283.2 38 HKR1-213 - 641 4e-07 29.8 61.5 2 10 0.094 62 3.6 2.8 5 32 283 318 283 324 0.69 SprT-like zinc ribbon domain Zn_ribbon_SprT PF17283.2 38 HKR1-213 - 641 4e-07 29.8 61.5 3 10 0.0024 1.6 8.7 0.7 5 36 311 350 310 352 0.81 SprT-like zinc ribbon domain Zn_ribbon_SprT PF17283.2 38 HKR1-213 - 641 4e-07 29.8 61.5 4 10 0.14 92 3.1 0.5 24 35 362 377 355 380 0.64 SprT-like zinc ribbon domain Zn_ribbon_SprT PF17283.2 38 HKR1-213 - 641 4e-07 29.8 61.5 5 10 0.00016 0.11 12.4 2.9 5 37 367 407 366 408 0.92 SprT-like zinc ribbon domain Zn_ribbon_SprT PF17283.2 38 HKR1-213 - 641 4e-07 29.8 61.5 6 10 0.00041 0.27 11.2 3.8 5 37 423 463 422 464 0.95 SprT-like zinc ribbon domain Zn_ribbon_SprT PF17283.2 38 HKR1-213 - 641 4e-07 29.8 61.5 7 10 0.014 9.2 6.3 6.6 6 32 480 515 479 548 0.85 SprT-like zinc ribbon domain Zn_ribbon_SprT PF17283.2 38 HKR1-213 - 641 4e-07 29.8 61.5 8 10 0.89 5.9e+02 0.5 0.5 24 32 554 568 551 572 0.66 SprT-like zinc ribbon domain Zn_ribbon_SprT PF17283.2 38 HKR1-213 - 641 4e-07 29.8 61.5 9 10 0.35 2.3e+02 1.8 2.7 7 33 563 597 560 603 0.72 SprT-like zinc ribbon domain Zn_ribbon_SprT PF17283.2 38 HKR1-213 - 641 4e-07 29.8 61.5 10 10 0.00037 0.24 11.3 3.9 5 32 589 625 588 629 0.85 SprT-like zinc ribbon domain # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/HKR1-213.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/HKR1-213.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/HKR1-213.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/HKR1-213.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/HKR1-213.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:54:42 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/HKR1-214.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/HKR1-214.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/HKR1-214.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/HKR1-214.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/HKR1-214.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:54:42 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/HKR1-215.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/HKR1-215.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/HKR1-215.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/HKR1-215.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/HKR1-215.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:54:42 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/HKR1-216.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/HKR1-216.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/HKR1-216.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/HKR1-216.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/HKR1-216.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:54:43 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/HKR1-217.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/HKR1-217.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/HKR1-217.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/HKR1-217.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/HKR1-217.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:54:43 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/HKR1-218.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/HKR1-218.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/HKR1-218.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/HKR1-218.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/HKR1-218.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:54:43 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/HKR1-219.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/HKR1-219.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/HKR1-219.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/HKR1-219.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/HKR1-219.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:54:44 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- KRAB PF01352.27 42 HKR1-220 - 171 1.5e-24 85.4 0.1 1 1 1.2e-28 2.2e-24 84.8 0.1 2 42 14 54 13 54 0.98 KRAB box # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/HKR1-220.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/HKR1-220.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/HKR1-220.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/HKR1-220.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/HKR1-220.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:54:44 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/HKR1-221.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/HKR1-221.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/HKR1-221.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/HKR1-221.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/HKR1-221.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:54:44 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/HKR1-222.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/HKR1-222.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/HKR1-222.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/HKR1-222.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/HKR1-222.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:54:45 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-C2H2 PF00096.26 23 HKR1-223 - 386 6.1e-75 243.7 109.2 1 13 2e-07 0.00011 22.5 0.5 1 23 28 50 28 50 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 HKR1-223 - 386 6.1e-75 243.7 109.2 2 13 5.5e-08 3e-05 24.2 1.1 1 23 56 78 56 78 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 HKR1-223 - 386 6.1e-75 243.7 109.2 3 13 2.6e-08 1.4e-05 25.3 0.4 1 23 84 106 84 106 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 HKR1-223 - 386 6.1e-75 243.7 109.2 4 13 1.1e-07 6.2e-05 23.2 5.0 1 23 112 134 112 134 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 HKR1-223 - 386 6.1e-75 243.7 109.2 5 13 9.3e-08 5e-05 23.5 1.9 1 23 140 162 140 162 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 HKR1-223 - 386 6.1e-75 243.7 109.2 6 13 1.9e-07 0.0001 22.6 3.1 1 23 168 190 168 190 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 HKR1-223 - 386 6.1e-75 243.7 109.2 7 13 9.3e-08 5.1e-05 23.5 2.6 1 23 196 218 196 218 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 HKR1-223 - 386 6.1e-75 243.7 109.2 8 13 7e-09 3.8e-06 27.1 1.5 1 23 224 246 224 246 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 HKR1-223 - 386 6.1e-75 243.7 109.2 9 13 1.5e-08 8.1e-06 26.0 0.2 1 23 252 274 252 274 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 HKR1-223 - 386 6.1e-75 243.7 109.2 10 13 9.8e-07 0.00053 20.3 2.4 1 23 280 302 280 302 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 HKR1-223 - 386 6.1e-75 243.7 109.2 11 13 1.4e-05 0.0078 16.6 0.8 1 23 306 328 306 328 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 HKR1-223 - 386 6.1e-75 243.7 109.2 12 13 1.1e-08 5.8e-06 26.5 3.6 1 23 334 356 334 356 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 HKR1-223 - 386 6.1e-75 243.7 109.2 13 13 1.4e-09 7.5e-07 29.3 1.7 1 23 362 384 362 384 0.98 Zinc finger, C2H2 type zf-H2C2_2 PF13465.6 26 HKR1-223 - 386 2.8e-71 233.0 85.3 1 14 0.00019 0.1 13.0 0.3 7 25 20 38 20 38 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 HKR1-223 - 386 2.8e-71 233.0 85.3 2 14 1.5e-08 8.1e-06 26.0 0.2 1 25 42 66 42 66 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 HKR1-223 - 386 2.8e-71 233.0 85.3 3 14 2.3e-07 0.00012 22.3 0.5 1 25 70 94 70 94 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 HKR1-223 - 386 2.8e-71 233.0 85.3 4 14 8e-08 4.3e-05 23.7 0.1 1 24 98 121 98 123 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 HKR1-223 - 386 2.8e-71 233.0 85.3 5 14 7.7e-08 4.2e-05 23.8 1.1 1 25 126 150 126 151 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 HKR1-223 - 386 2.8e-71 233.0 85.3 6 14 8.3e-10 4.5e-07 30.0 2.6 1 24 154 177 154 178 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 HKR1-223 - 386 2.8e-71 233.0 85.3 7 14 3e-07 0.00016 21.9 1.1 1 24 182 205 182 206 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 HKR1-223 - 386 2.8e-71 233.0 85.3 8 14 4.7e-11 2.5e-08 34.0 0.6 1 26 210 235 210 235 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 HKR1-223 - 386 2.8e-71 233.0 85.3 9 14 3.8e-08 2.1e-05 24.7 0.1 2 25 239 262 238 263 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 HKR1-223 - 386 2.8e-71 233.0 85.3 10 14 1.5e-07 8.1e-05 22.9 0.5 3 25 268 290 267 291 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 HKR1-223 - 386 2.8e-71 233.0 85.3 11 14 0.048 26 5.5 0.3 1 24 294 315 294 315 0.89 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 HKR1-223 - 386 2.8e-71 233.0 85.3 12 14 0.00012 0.064 13.7 0.2 2 25 321 344 320 345 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 HKR1-223 - 386 2.8e-71 233.0 85.3 13 14 7.8e-08 4.2e-05 23.8 1.2 1 25 348 372 348 373 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 HKR1-223 - 386 2.8e-71 233.0 85.3 14 14 0.15 81 3.9 0.3 1 11 376 386 376 386 0.91 Zinc-finger double domain zf-C2H2_4 PF13894.6 24 HKR1-223 - 386 4.1e-48 157.8 102.2 1 13 5.9e-05 0.032 15.1 0.4 1 23 28 50 28 51 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 HKR1-223 - 386 4.1e-48 157.8 102.2 2 13 6.9e-05 0.038 14.8 0.9 1 23 56 78 56 79 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 HKR1-223 - 386 4.1e-48 157.8 102.2 3 13 5e-06 0.0027 18.4 0.5 1 23 84 106 84 107 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 HKR1-223 - 386 4.1e-48 157.8 102.2 4 13 3.9e-05 0.021 15.6 3.9 1 23 112 134 112 135 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 HKR1-223 - 386 4.1e-48 157.8 102.2 5 13 2e-06 0.0011 19.6 1.4 1 23 140 162 140 163 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 HKR1-223 - 386 4.1e-48 157.8 102.2 6 13 5.2e-05 0.028 15.2 2.6 1 23 168 190 168 191 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 HKR1-223 - 386 4.1e-48 157.8 102.2 7 13 0.00013 0.071 14.0 2.6 1 23 196 218 196 219 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 HKR1-223 - 386 4.1e-48 157.8 102.2 8 13 7.7e-07 0.00042 20.9 1.0 1 23 224 246 224 247 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 HKR1-223 - 386 4.1e-48 157.8 102.2 9 13 6.7e-06 0.0036 18.0 0.2 1 23 252 274 252 275 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 HKR1-223 - 386 4.1e-48 157.8 102.2 10 13 8.4e-06 0.0046 17.7 1.7 1 23 280 302 280 303 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 HKR1-223 - 386 4.1e-48 157.8 102.2 11 13 7.8e-05 0.042 14.7 0.7 1 23 306 328 306 329 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 HKR1-223 - 386 4.1e-48 157.8 102.2 12 13 1e-05 0.0056 17.4 2.9 1 23 334 356 334 357 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 HKR1-223 - 386 4.1e-48 157.8 102.2 13 13 5.8e-07 0.00031 21.3 0.9 1 23 362 384 362 385 0.96 C2H2-type zinc finger zf-trcl PF13451.6 48 HKR1-223 - 386 2.7e-14 52.8 48.3 1 13 0.0008 0.44 10.5 0.1 3 17 26 40 25 42 0.90 Probable zinc-ribbon domain zf-trcl PF13451.6 48 HKR1-223 - 386 2.7e-14 52.8 48.3 2 13 9e-05 0.049 13.5 0.1 3 17 54 68 52 70 0.89 Probable zinc-ribbon domain zf-trcl PF13451.6 48 HKR1-223 - 386 2.7e-14 52.8 48.3 3 13 0.013 7.1 6.6 0.1 3 14 82 93 82 96 0.91 Probable zinc-ribbon domain zf-trcl PF13451.6 48 HKR1-223 - 386 2.7e-14 52.8 48.3 4 13 0.03 16 5.5 0.0 3 14 110 121 108 122 0.88 Probable zinc-ribbon domain zf-trcl PF13451.6 48 HKR1-223 - 386 2.7e-14 52.8 48.3 5 13 0.13 70 3.4 0.1 3 14 138 149 136 150 0.86 Probable zinc-ribbon domain zf-trcl PF13451.6 48 HKR1-223 - 386 2.7e-14 52.8 48.3 6 13 0.0015 0.8 9.6 0.0 3 17 166 180 164 183 0.89 Probable zinc-ribbon domain zf-trcl PF13451.6 48 HKR1-223 - 386 2.7e-14 52.8 48.3 7 13 0.56 3.1e+02 1.4 0.5 3 14 194 205 194 208 0.87 Probable zinc-ribbon domain zf-trcl PF13451.6 48 HKR1-223 - 386 2.7e-14 52.8 48.3 8 13 0.018 9.8 6.2 0.1 3 15 222 234 220 236 0.90 Probable zinc-ribbon domain zf-trcl PF13451.6 48 HKR1-223 - 386 2.7e-14 52.8 48.3 9 13 0.035 19 5.2 0.1 3 14 250 261 248 262 0.88 Probable zinc-ribbon domain zf-trcl PF13451.6 48 HKR1-223 - 386 2.7e-14 52.8 48.3 10 13 0.027 14 5.6 0.1 3 14 278 289 276 290 0.90 Probable zinc-ribbon domain zf-trcl PF13451.6 48 HKR1-223 - 386 2.7e-14 52.8 48.3 11 13 0.23 1.3e+02 2.6 1.3 5 14 306 315 304 316 0.87 Probable zinc-ribbon domain zf-trcl PF13451.6 48 HKR1-223 - 386 2.7e-14 52.8 48.3 12 13 0.11 60 3.7 0.1 3 14 332 343 331 344 0.85 Probable zinc-ribbon domain zf-trcl PF13451.6 48 HKR1-223 - 386 2.7e-14 52.8 48.3 13 13 0.057 31 4.6 0.0 3 14 360 371 358 372 0.88 Probable zinc-ribbon domain zf-C2H2_11 PF16622.5 29 HKR1-223 - 386 3.3e-12 46.0 80.2 1 13 0.0082 4.5 7.1 0.1 7 17 30 40 28 48 0.80 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 HKR1-223 - 386 3.3e-12 46.0 80.2 2 13 0.074 40 4.1 0.2 7 17 58 68 56 76 0.81 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 HKR1-223 - 386 3.3e-12 46.0 80.2 3 13 0.23 1.2e+02 2.5 0.3 7 17 86 96 84 104 0.79 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 HKR1-223 - 386 3.3e-12 46.0 80.2 4 13 0.014 7.7 6.4 1.1 7 23 114 130 111 133 0.90 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 HKR1-223 - 386 3.3e-12 46.0 80.2 5 13 0.085 46 3.9 1.8 7 25 142 160 140 162 0.94 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 HKR1-223 - 386 3.3e-12 46.0 80.2 6 13 0.0023 1.2 8.9 0.2 7 23 170 186 167 189 0.89 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 HKR1-223 - 386 3.3e-12 46.0 80.2 7 13 1.9e-05 0.01 15.6 1.9 7 24 198 215 196 216 0.94 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 HKR1-223 - 386 3.3e-12 46.0 80.2 8 13 0.0012 0.63 9.8 0.5 7 24 226 243 224 245 0.91 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 HKR1-223 - 386 3.3e-12 46.0 80.2 9 13 0.26 1.4e+02 2.3 0.1 7 14 254 261 252 271 0.86 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 HKR1-223 - 386 3.3e-12 46.0 80.2 10 13 0.0018 0.97 9.3 0.3 7 24 282 299 279 301 0.91 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 HKR1-223 - 386 3.3e-12 46.0 80.2 11 13 0.0051 2.8 7.8 1.1 4 24 305 325 302 327 0.88 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 HKR1-223 - 386 3.3e-12 46.0 80.2 12 13 0.0024 1.3 8.8 1.4 7 24 336 353 333 355 0.92 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 HKR1-223 - 386 3.3e-12 46.0 80.2 13 13 0.0023 1.3 8.9 1.2 7 24 364 381 362 383 0.93 zinc-finger C2H2-type Zn-ribbon_8 PF09723.10 40 HKR1-223 - 386 5e-12 45.7 57.9 1 12 5.5e-05 0.03 14.5 1.1 6 34 28 63 27 66 0.89 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 HKR1-223 - 386 5e-12 45.7 57.9 2 12 9.3e-05 0.05 13.7 1.9 6 34 56 91 54 96 0.86 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 HKR1-223 - 386 5e-12 45.7 57.9 3 12 6.5e-05 0.035 14.2 2.7 6 34 84 119 81 124 0.89 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 HKR1-223 - 386 5e-12 45.7 57.9 4 12 0.0031 1.7 8.8 3.9 6 34 112 147 111 153 0.84 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 HKR1-223 - 386 5e-12 45.7 57.9 5 12 0.037 20 5.4 4.5 6 34 140 175 139 180 0.74 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 HKR1-223 - 386 5e-12 45.7 57.9 6 12 0.0017 0.91 9.7 2.5 6 34 168 203 166 203 0.87 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 HKR1-223 - 386 5e-12 45.7 57.9 7 12 0.00064 0.35 11.0 3.3 6 38 196 235 193 237 0.88 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 HKR1-223 - 386 5e-12 45.7 57.9 8 12 0.025 14 5.9 0.2 6 19 224 237 223 246 0.78 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 HKR1-223 - 386 5e-12 45.7 57.9 9 12 0.00075 0.41 10.8 2.0 6 38 252 291 251 293 0.86 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 HKR1-223 - 386 5e-12 45.7 57.9 10 12 0.00057 0.31 11.2 2.6 6 38 306 345 305 347 0.85 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 HKR1-223 - 386 5e-12 45.7 57.9 11 12 0.002 1.1 9.4 2.9 8 37 336 372 334 375 0.85 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 HKR1-223 - 386 5e-12 45.7 57.9 12 12 0.05 27 5.0 0.2 6 16 362 372 360 382 0.84 Zinc ribbon domain DUF3268 PF11672.8 118 HKR1-223 - 386 2.4e-10 40.8 37.6 1 7 0.0003 0.16 12.3 0.4 2 37 27 62 26 78 0.89 zinc-finger-containing domain DUF3268 PF11672.8 118 HKR1-223 - 386 2.4e-10 40.8 37.6 2 7 6.1e-05 0.033 14.5 0.8 2 44 83 125 82 131 0.87 zinc-finger-containing domain DUF3268 PF11672.8 118 HKR1-223 - 386 2.4e-10 40.8 37.6 3 7 0.26 1.4e+02 2.8 0.1 22 37 130 146 120 155 0.72 zinc-finger-containing domain DUF3268 PF11672.8 118 HKR1-223 - 386 2.4e-10 40.8 37.6 4 7 0.00033 0.18 12.2 1.4 2 44 167 209 166 219 0.86 zinc-finger-containing domain DUF3268 PF11672.8 118 HKR1-223 - 386 2.4e-10 40.8 37.6 5 7 0.012 6.3 7.2 0.3 2 37 223 258 222 266 0.91 zinc-finger-containing domain DUF3268 PF11672.8 118 HKR1-223 - 386 2.4e-10 40.8 37.6 6 7 0.014 7.7 6.9 0.5 3 37 280 312 277 320 0.87 zinc-finger-containing domain DUF3268 PF11672.8 118 HKR1-223 - 386 2.4e-10 40.8 37.6 7 7 0.0026 1.4 9.3 0.4 2 37 333 368 332 376 0.78 zinc-finger-containing domain ADK_lid PF05191.14 36 HKR1-223 - 386 3.9e-09 36.3 47.4 1 12 0.0017 0.94 9.5 1.1 3 28 29 62 28 66 0.80 Adenylate kinase, active site lid ADK_lid PF05191.14 36 HKR1-223 - 386 3.9e-09 36.3 47.4 2 12 0.00086 0.47 10.5 1.6 3 30 57 92 56 95 0.78 Adenylate kinase, active site lid ADK_lid PF05191.14 36 HKR1-223 - 386 3.9e-09 36.3 47.4 3 12 0.0076 4.1 7.5 0.1 3 15 85 97 83 107 0.84 Adenylate kinase, active site lid ADK_lid PF05191.14 36 HKR1-223 - 386 3.9e-09 36.3 47.4 4 12 0.0052 2.8 8.0 1.3 3 31 113 149 112 153 0.75 Adenylate kinase, active site lid ADK_lid PF05191.14 36 HKR1-223 - 386 3.9e-09 36.3 47.4 5 12 0.085 46 4.1 0.3 3 12 169 178 168 193 0.81 Adenylate kinase, active site lid ADK_lid PF05191.14 36 HKR1-223 - 386 3.9e-09 36.3 47.4 6 12 0.0068 3.7 7.6 2.2 3 29 197 231 196 237 0.82 Adenylate kinase, active site lid ADK_lid PF05191.14 36 HKR1-223 - 386 3.9e-09 36.3 47.4 7 12 0.12 63 3.7 0.1 3 12 225 234 224 243 0.82 Adenylate kinase, active site lid ADK_lid PF05191.14 36 HKR1-223 - 386 3.9e-09 36.3 47.4 8 12 0.0005 0.27 11.2 0.6 3 33 253 291 252 293 0.75 Adenylate kinase, active site lid ADK_lid PF05191.14 36 HKR1-223 - 386 3.9e-09 36.3 47.4 9 12 0.44 2.4e+02 1.8 0.1 3 12 281 290 280 299 0.76 Adenylate kinase, active site lid ADK_lid PF05191.14 36 HKR1-223 - 386 3.9e-09 36.3 47.4 10 12 0.016 8.4 6.5 0.6 3 29 307 341 306 347 0.70 Adenylate kinase, active site lid ADK_lid PF05191.14 36 HKR1-223 - 386 3.9e-09 36.3 47.4 11 12 0.28 1.5e+02 2.4 0.1 3 12 335 344 334 351 0.81 Adenylate kinase, active site lid ADK_lid PF05191.14 36 HKR1-223 - 386 3.9e-09 36.3 47.4 12 12 0.0057 3.1 7.9 0.2 3 15 363 375 362 381 0.81 Adenylate kinase, active site lid XPA_N PF01286.18 32 HKR1-223 - 386 1.2e-08 34.8 39.8 1 13 0.081 44 4.2 0.0 3 12 29 38 27 46 0.86 XPA protein N-terminal XPA_N PF01286.18 32 HKR1-223 - 386 1.2e-08 34.8 39.8 2 13 0.16 86 3.3 0.0 3 12 57 66 55 74 0.78 XPA protein N-terminal XPA_N PF01286.18 32 HKR1-223 - 386 1.2e-08 34.8 39.8 3 13 0.031 17 5.6 0.1 3 12 85 94 83 102 0.82 XPA protein N-terminal XPA_N PF01286.18 32 HKR1-223 - 386 1.2e-08 34.8 39.8 4 13 0.068 37 4.5 0.0 3 12 113 122 111 130 0.83 XPA protein N-terminal XPA_N PF01286.18 32 HKR1-223 - 386 1.2e-08 34.8 39.8 5 13 0.082 45 4.2 0.1 3 12 141 150 139 158 0.83 XPA protein N-terminal XPA_N PF01286.18 32 HKR1-223 - 386 1.2e-08 34.8 39.8 6 13 0.18 98 3.1 0.0 3 11 169 177 167 179 0.87 XPA protein N-terminal XPA_N PF01286.18 32 HKR1-223 - 386 1.2e-08 34.8 39.8 7 13 0.16 86 3.3 0.5 3 11 197 205 195 211 0.87 XPA protein N-terminal XPA_N PF01286.18 32 HKR1-223 - 386 1.2e-08 34.8 39.8 8 13 0.11 59 3.8 0.1 3 12 225 234 224 242 0.80 XPA protein N-terminal XPA_N PF01286.18 32 HKR1-223 - 386 1.2e-08 34.8 39.8 9 13 0.05 27 4.9 0.0 3 13 253 263 251 270 0.87 XPA protein N-terminal XPA_N PF01286.18 32 HKR1-223 - 386 1.2e-08 34.8 39.8 10 13 0.12 63 3.7 0.3 4 12 282 290 280 291 0.87 XPA protein N-terminal XPA_N PF01286.18 32 HKR1-223 - 386 1.2e-08 34.8 39.8 11 13 0.098 53 4.0 1.1 3 12 307 316 305 317 0.89 XPA protein N-terminal XPA_N PF01286.18 32 HKR1-223 - 386 1.2e-08 34.8 39.8 12 13 0.028 15 5.7 0.0 3 12 335 344 333 352 0.82 XPA protein N-terminal XPA_N PF01286.18 32 HKR1-223 - 386 1.2e-08 34.8 39.8 13 13 0.28 1.5e+02 2.5 0.0 3 12 363 372 361 378 0.88 XPA protein N-terminal zinc_ribbon_15 PF17032.5 86 HKR1-223 - 386 1.4e-08 35.4 40.0 1 9 0.0049 2.6 8.8 0.2 36 74 26 64 14 71 0.83 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 HKR1-223 - 386 1.4e-08 35.4 40.0 2 9 0.001 0.55 11.0 0.7 38 76 84 122 71 129 0.87 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 HKR1-223 - 386 1.4e-08 35.4 40.0 3 9 0.00061 0.33 11.7 0.8 35 76 137 178 127 184 0.86 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 HKR1-223 - 386 1.4e-08 35.4 40.0 4 9 0.0034 1.8 9.3 1.2 29 74 159 204 153 214 0.83 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 HKR1-223 - 386 1.4e-08 35.4 40.0 5 9 0.019 10 7.0 1.8 38 77 196 235 185 242 0.84 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 HKR1-223 - 386 1.4e-08 35.4 40.0 6 9 0.0067 3.6 8.4 0.7 35 78 221 264 212 270 0.85 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 HKR1-223 - 386 1.4e-08 35.4 40.0 7 9 0.0022 1.2 9.9 0.4 35 77 249 291 239 296 0.86 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 HKR1-223 - 386 1.4e-08 35.4 40.0 8 9 0.033 18 6.2 1.1 33 74 275 314 267 320 0.71 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 HKR1-223 - 386 1.4e-08 35.4 40.0 9 9 0.004 2.2 9.1 3.6 28 78 324 374 306 377 0.81 zinc-ribbon family Zn_ribbon_SprT PF17283.2 38 HKR1-223 - 386 1.6e-08 34.3 65.0 1 10 0.038 21 5.2 0.2 21 32 20 35 16 40 0.82 SprT-like zinc ribbon domain Zn_ribbon_SprT PF17283.2 38 HKR1-223 - 386 1.6e-08 34.3 65.0 2 10 0.053 29 4.7 0.2 16 32 46 63 42 68 0.67 SprT-like zinc ribbon domain Zn_ribbon_SprT PF17283.2 38 HKR1-223 - 386 1.6e-08 34.3 65.0 3 10 0.0016 0.85 9.6 0.7 5 36 56 95 55 97 0.81 SprT-like zinc ribbon domain Zn_ribbon_SprT PF17283.2 38 HKR1-223 - 386 1.6e-08 34.3 65.0 4 10 0.092 50 3.9 0.5 24 35 107 122 100 125 0.64 SprT-like zinc ribbon domain Zn_ribbon_SprT PF17283.2 38 HKR1-223 - 386 1.6e-08 34.3 65.0 5 10 0.00011 0.061 13.2 3.0 5 37 112 152 111 153 0.92 SprT-like zinc ribbon domain Zn_ribbon_SprT PF17283.2 38 HKR1-223 - 386 1.6e-08 34.3 65.0 6 10 0.00045 0.24 11.3 4.6 5 37 168 208 167 209 0.95 SprT-like zinc ribbon domain Zn_ribbon_SprT PF17283.2 38 HKR1-223 - 386 1.6e-08 34.3 65.0 7 10 0.013 7.3 6.6 7.3 6 32 225 260 224 293 0.85 SprT-like zinc ribbon domain Zn_ribbon_SprT PF17283.2 38 HKR1-223 - 386 1.6e-08 34.3 65.0 8 10 0.62 3.4e+02 1.3 0.7 24 33 299 314 296 319 0.68 SprT-like zinc ribbon domain Zn_ribbon_SprT PF17283.2 38 HKR1-223 - 386 1.6e-08 34.3 65.0 9 10 0.26 1.4e+02 2.5 2.7 7 33 308 342 305 346 0.74 SprT-like zinc ribbon domain Zn_ribbon_SprT PF17283.2 38 HKR1-223 - 386 1.6e-08 34.3 65.0 10 10 0.00028 0.15 12.0 4.1 5 32 334 370 333 374 0.85 SprT-like zinc ribbon domain zf-C2H2_jaz PF12171.8 27 HKR1-223 - 386 4e-08 33.3 43.9 1 12 0.23 1.2e+02 3.1 0.0 2 24 28 50 27 51 0.89 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 HKR1-223 - 386 4e-08 33.3 43.9 2 12 1.3 7e+02 0.7 0.1 2 12 56 66 55 79 0.70 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 HKR1-223 - 386 4e-08 33.3 43.9 3 12 3.8 2.1e+03 -0.8 0.1 2 20 84 102 83 104 0.67 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 HKR1-223 - 386 4e-08 33.3 43.9 4 12 0.016 8.8 6.8 0.1 2 24 112 134 111 135 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 HKR1-223 - 386 4e-08 33.3 43.9 5 12 0.87 4.7e+02 1.2 0.2 2 24 140 162 139 162 0.89 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 HKR1-223 - 386 4e-08 33.3 43.9 6 12 0.0006 0.33 11.3 0.6 2 24 168 190 167 191 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 HKR1-223 - 386 4e-08 33.3 43.9 7 12 7.5 4e+03 -1.7 0.7 15 24 209 218 196 218 0.70 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 HKR1-223 - 386 4e-08 33.3 43.9 8 12 0.00037 0.2 12.0 0.0 2 24 224 246 223 247 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 HKR1-223 - 386 4e-08 33.3 43.9 9 12 9.7e-05 0.053 13.8 0.0 2 24 252 274 251 275 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 HKR1-223 - 386 4e-08 33.3 43.9 10 12 2.2 1.2e+03 -0.0 0.1 2 11 280 289 279 290 0.87 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 HKR1-223 - 386 4e-08 33.3 43.9 11 12 0.2 1.1e+02 3.3 0.2 2 24 334 356 333 357 0.89 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 HKR1-223 - 386 4e-08 33.3 43.9 12 12 0.037 20 5.6 0.1 2 24 362 384 361 385 0.88 Zinc-finger double-stranded RNA-binding zf-C2H2_6 PF13912.6 27 HKR1-223 - 386 2.6e-07 30.5 102.7 1 13 0.0012 0.67 10.0 0.3 2 25 28 51 28 53 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 HKR1-223 - 386 2.6e-07 30.5 102.7 2 13 0.01 5.5 7.1 0.9 2 24 56 78 56 80 0.95 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 HKR1-223 - 386 2.6e-07 30.5 102.7 3 13 0.00016 0.085 12.9 0.7 2 24 84 106 84 109 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 HKR1-223 - 386 2.6e-07 30.5 102.7 4 13 0.047 25 5.0 3.6 2 25 112 135 112 137 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 HKR1-223 - 386 2.6e-07 30.5 102.7 5 13 0.18 98 3.1 1.2 2 24 140 162 140 165 0.90 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 HKR1-223 - 386 2.6e-07 30.5 102.7 6 13 0.0025 1.3 9.1 2.2 2 25 168 191 168 193 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 HKR1-223 - 386 2.6e-07 30.5 102.7 7 13 0.27 1.5e+02 2.6 3.1 2 24 196 218 196 221 0.91 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 HKR1-223 - 386 2.6e-07 30.5 102.7 8 13 0.0019 1 9.4 1.0 2 25 224 247 224 249 0.91 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 HKR1-223 - 386 2.6e-07 30.5 102.7 9 13 0.012 6.8 6.8 0.2 2 25 252 275 252 277 0.87 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 HKR1-223 - 386 2.6e-07 30.5 102.7 10 13 0.0011 0.6 10.2 0.6 3 24 281 302 280 304 0.92 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 HKR1-223 - 386 2.6e-07 30.5 102.7 11 13 0.69 3.8e+02 1.3 0.1 1 11 305 315 305 315 0.83 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 HKR1-223 - 386 2.6e-07 30.5 102.7 12 13 0.0035 1.9 8.6 3.0 2 25 334 357 334 359 0.95 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 HKR1-223 - 386 2.6e-07 30.5 102.7 13 13 0.0027 1.5 8.9 0.8 2 24 362 384 362 386 0.95 C2H2-type zinc finger # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/HKR1-223.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/HKR1-223.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/HKR1-223.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/HKR1-223.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/HKR1-223.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:54:45 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/HKR1-224.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/HKR1-224.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/HKR1-224.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/HKR1-224.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/HKR1-224.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:54:46 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/HKR1-225.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/HKR1-225.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/HKR1-225.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/HKR1-225.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/HKR1-225.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:54:46 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/HKR1-226.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/HKR1-226.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/HKR1-226.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/HKR1-226.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/HKR1-226.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:54:46 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/HKR1-227.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/HKR1-227.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/HKR1-227.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/HKR1-227.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/HKR1-227.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:54:47 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 IKZF1-201 - 519 4.8e-19 67.9 34.7 1 6 4.4 6e+03 -2.0 0.1 15 21 117 123 113 123 0.80 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 IKZF1-201 - 519 4.8e-19 67.9 34.7 2 6 1.1e-09 1.6e-06 28.3 0.2 2 25 132 155 132 156 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 IKZF1-201 - 519 4.8e-19 67.9 34.7 3 6 2e-09 2.7e-06 27.5 3.9 1 24 159 182 159 184 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 IKZF1-201 - 519 4.8e-19 67.9 34.7 4 6 1.1e-07 0.00016 22.0 0.9 1 26 187 212 187 212 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 IKZF1-201 - 519 4.8e-19 67.9 34.7 5 6 0.12 1.7e+02 2.9 0.1 13 22 460 469 454 472 0.77 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 IKZF1-201 - 519 4.8e-19 67.9 34.7 6 6 0.01 14 6.3 2.2 5 22 480 497 476 499 0.89 Zinc-finger double domain zf-C2H2 PF00096.26 23 IKZF1-201 - 519 5.5e-16 58.0 44.9 1 6 0.0019 2.7 8.6 0.1 2 23 118 139 117 139 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 IKZF1-201 - 519 5.5e-16 58.0 44.9 2 6 7.4e-09 1e-05 25.7 0.4 1 23 145 167 145 167 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 IKZF1-201 - 519 5.5e-16 58.0 44.9 3 6 6.3e-06 0.0086 16.5 4.7 1 23 173 195 173 195 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 IKZF1-201 - 519 5.5e-16 58.0 44.9 4 6 1.1e-06 0.0016 18.8 5.1 1 23 201 224 201 224 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 IKZF1-201 - 519 5.5e-16 58.0 44.9 5 6 0.17 2.4e+02 2.5 0.9 1 20 462 481 462 482 0.84 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 IKZF1-201 - 519 5.5e-16 58.0 44.9 6 6 0.00089 1.2 9.7 1.4 1 23 490 514 490 514 0.91 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 IKZF1-201 - 519 3.3e-10 39.9 41.8 1 6 0.013 18 6.5 0.1 2 23 118 139 117 140 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 IKZF1-201 - 519 3.3e-10 39.9 41.8 2 6 1.5e-07 0.0002 21.9 0.4 1 23 145 167 145 168 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 IKZF1-201 - 519 3.3e-10 39.9 41.8 3 6 0.00049 0.67 11.0 3.5 1 23 173 195 173 196 0.91 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 IKZF1-201 - 519 3.3e-10 39.9 41.8 4 6 0.00037 0.51 11.3 4.8 1 24 201 224 201 224 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 IKZF1-201 - 519 3.3e-10 39.9 41.8 5 6 0.014 19 6.4 0.7 1 20 462 481 462 482 0.89 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 IKZF1-201 - 519 3.3e-10 39.9 41.8 6 6 0.024 33 5.7 0.8 1 20 490 509 490 511 0.80 C2H2-type zinc finger # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/IKZF1-201.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/IKZF1-201.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/IKZF1-201.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/IKZF1-201.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/IKZF1-201.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:54:47 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 IKZF1-202 - 432 8.5e-16 57.6 28.4 1 5 0.00023 0.31 11.5 0.0 11 25 54 68 51 69 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 IKZF1-202 - 432 8.5e-16 57.6 28.4 2 5 1.6e-09 2.2e-06 27.8 3.9 1 24 72 95 72 97 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 IKZF1-202 - 432 8.5e-16 57.6 28.4 3 5 9e-08 0.00012 22.3 0.9 1 26 100 125 100 125 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 IKZF1-202 - 432 8.5e-16 57.6 28.4 4 5 0.099 1.4e+02 3.2 0.1 13 22 373 382 367 385 0.77 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 IKZF1-202 - 432 8.5e-16 57.6 28.4 5 5 0.0082 11 6.6 2.2 4 22 392 410 389 412 0.89 Zinc-finger double domain zf-C2H2 PF00096.26 23 IKZF1-202 - 432 1.1e-14 54.0 40.3 1 5 5.9e-09 8.2e-06 26.0 0.4 1 23 58 80 58 80 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 IKZF1-202 - 432 1.1e-14 54.0 40.3 2 5 5e-06 0.0069 16.8 4.7 1 23 86 108 86 108 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 IKZF1-202 - 432 1.1e-14 54.0 40.3 3 5 9.2e-07 0.0013 19.1 5.1 1 23 114 137 114 137 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 IKZF1-202 - 432 1.1e-14 54.0 40.3 4 5 0.14 1.9e+02 2.8 0.9 1 20 375 394 375 395 0.84 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 IKZF1-202 - 432 1.1e-14 54.0 40.3 5 5 0.00071 0.98 10.0 1.4 1 23 403 427 403 427 0.91 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 IKZF1-202 - 432 1.3e-09 38.1 37.1 1 5 1.2e-07 0.00016 22.2 0.4 1 23 58 80 58 81 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 IKZF1-202 - 432 1.3e-09 38.1 37.1 2 5 0.00039 0.53 11.3 3.5 1 23 86 108 86 109 0.91 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 IKZF1-202 - 432 1.3e-09 38.1 37.1 3 5 0.00029 0.4 11.6 4.8 1 24 114 137 114 137 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 IKZF1-202 - 432 1.3e-09 38.1 37.1 4 5 0.011 16 6.7 0.7 1 20 375 394 375 395 0.89 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 IKZF1-202 - 432 1.3e-09 38.1 37.1 5 5 0.019 26 6.0 0.8 1 20 403 422 403 424 0.80 C2H2-type zinc finger # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/IKZF1-202.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/IKZF1-202.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/IKZF1-202.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/IKZF1-202.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/IKZF1-202.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:54:47 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/IKZF1-203.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/IKZF1-203.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/IKZF1-203.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/IKZF1-203.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/IKZF1-203.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:54:48 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/IKZF1-204.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/IKZF1-204.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/IKZF1-204.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/IKZF1-204.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/IKZF1-204.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:54:48 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 IKZF1-205 - 432 1.6e-15 56.7 28.3 1 6 4.1 4.9e+03 -1.7 0.1 15 21 117 123 113 123 0.80 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 IKZF1-205 - 432 1.6e-15 56.7 28.3 2 6 1.1e-09 1.3e-06 28.6 0.2 2 25 132 155 132 156 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 IKZF1-205 - 432 1.6e-15 56.7 28.3 3 6 1.8e-09 2.2e-06 27.8 3.9 1 24 159 182 159 184 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 IKZF1-205 - 432 1.6e-15 56.7 28.3 4 6 0.063 76 4.0 0.0 1 13 187 199 187 207 0.81 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 IKZF1-205 - 432 1.6e-15 56.7 28.3 5 6 0.11 1.4e+02 3.2 0.1 13 22 373 382 367 385 0.77 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 IKZF1-205 - 432 1.6e-15 56.7 28.3 6 6 0.0094 11 6.6 2.2 4 22 392 410 389 412 0.89 Zinc-finger double domain zf-C2H2 PF00096.26 23 IKZF1-205 - 432 1.4e-12 47.3 31.8 1 5 0.0018 2.2 8.9 0.1 2 23 118 139 117 139 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 IKZF1-205 - 432 1.4e-12 47.3 31.8 2 5 6.9e-09 8.2e-06 26.0 0.4 1 23 145 167 145 167 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 IKZF1-205 - 432 1.4e-12 47.3 31.8 3 5 5.8e-06 0.0069 16.8 4.7 1 23 173 195 173 195 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 IKZF1-205 - 432 1.4e-12 47.3 31.8 4 5 0.16 1.9e+02 2.8 0.9 1 20 375 394 375 395 0.84 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 IKZF1-205 - 432 1.4e-12 47.3 31.8 5 5 0.00082 0.98 10.0 1.4 1 23 403 427 403 427 0.91 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 IKZF1-205 - 432 3.8e-09 36.6 29.0 1 5 0.012 14 6.8 0.1 2 23 118 139 117 140 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 IKZF1-205 - 432 3.8e-09 36.6 29.0 2 5 1.3e-07 0.00016 22.2 0.4 1 23 145 167 145 168 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 IKZF1-205 - 432 3.8e-09 36.6 29.0 3 5 0.00045 0.53 11.3 3.5 1 23 173 195 173 196 0.91 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 IKZF1-205 - 432 3.8e-09 36.6 29.0 4 5 0.013 16 6.7 0.7 1 20 375 394 375 395 0.89 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 IKZF1-205 - 432 3.8e-09 36.6 29.0 5 5 0.022 26 6.0 0.8 1 20 403 422 403 424 0.80 C2H2-type zinc finger # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/IKZF1-205.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/IKZF1-205.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/IKZF1-205.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/IKZF1-205.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/IKZF1-205.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:54:49 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 IKZF1-206 - 477 4.8e-14 52.1 30.5 1 6 4 5.5e+03 -1.9 0.1 15 21 117 123 113 123 0.80 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 IKZF1-206 - 477 4.8e-14 52.1 30.5 2 6 1e-09 1.4e-06 28.4 0.2 2 25 132 155 132 156 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 IKZF1-206 - 477 4.8e-14 52.1 30.5 3 6 1.8e-09 2.4e-06 27.7 3.9 1 24 159 182 159 184 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 IKZF1-206 - 477 4.8e-14 52.1 30.5 4 6 0.22 3.1e+02 2.1 0.1 1 13 187 199 187 202 0.84 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 IKZF1-206 - 477 4.8e-14 52.1 30.5 5 6 0.11 1.5e+02 3.0 0.1 13 22 418 427 412 430 0.77 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 IKZF1-206 - 477 4.8e-14 52.1 30.5 6 6 0.0092 13 6.5 2.2 4 22 437 455 434 457 0.89 Zinc-finger double domain zf-C2H2 PF00096.26 23 IKZF1-206 - 477 2.6e-12 46.5 31.8 1 5 0.0018 2.4 8.8 0.1 2 23 118 139 117 139 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 IKZF1-206 - 477 2.6e-12 46.5 31.8 2 5 6.7e-09 9.2e-06 25.8 0.4 1 23 145 167 145 167 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 IKZF1-206 - 477 2.6e-12 46.5 31.8 3 5 5.7e-06 0.0078 16.6 4.7 1 23 173 195 173 195 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 IKZF1-206 - 477 2.6e-12 46.5 31.8 4 5 0.15 2.1e+02 2.6 0.9 1 20 420 439 420 440 0.84 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 IKZF1-206 - 477 2.6e-12 46.5 31.8 5 5 0.0008 1.1 9.8 1.4 1 23 448 472 448 472 0.91 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 IKZF1-206 - 477 6.8e-09 35.8 29.0 1 5 0.012 16 6.6 0.1 2 23 118 139 117 140 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 IKZF1-206 - 477 6.8e-09 35.8 29.0 2 5 1.3e-07 0.00018 22.0 0.4 1 23 145 167 145 168 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 IKZF1-206 - 477 6.8e-09 35.8 29.0 3 5 0.00044 0.6 11.1 3.5 1 23 173 195 173 196 0.91 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 IKZF1-206 - 477 6.8e-09 35.8 29.0 4 5 0.013 18 6.5 0.7 1 20 420 439 420 440 0.89 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 IKZF1-206 - 477 6.8e-09 35.8 29.0 5 5 0.021 29 5.8 0.8 1 20 448 467 448 469 0.80 C2H2-type zinc finger # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/IKZF1-206.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/IKZF1-206.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/IKZF1-206.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/IKZF1-206.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/IKZF1-206.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:54:49 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/IKZF1-207.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/IKZF1-207.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/IKZF1-207.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/IKZF1-207.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/IKZF1-207.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:54:49 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/IKZF1-208.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/IKZF1-208.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/IKZF1-208.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/IKZF1-208.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/IKZF1-208.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:54:50 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 IKZF1-209 - 432 8.5e-16 57.6 28.4 1 5 0.00023 0.31 11.5 0.0 11 25 54 68 51 69 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 IKZF1-209 - 432 8.5e-16 57.6 28.4 2 5 1.6e-09 2.2e-06 27.8 3.9 1 24 72 95 72 97 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 IKZF1-209 - 432 8.5e-16 57.6 28.4 3 5 9e-08 0.00012 22.3 0.9 1 26 100 125 100 125 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 IKZF1-209 - 432 8.5e-16 57.6 28.4 4 5 0.099 1.4e+02 3.2 0.1 13 22 373 382 367 385 0.77 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 IKZF1-209 - 432 8.5e-16 57.6 28.4 5 5 0.0082 11 6.6 2.2 4 22 392 410 389 412 0.89 Zinc-finger double domain zf-C2H2 PF00096.26 23 IKZF1-209 - 432 1.1e-14 54.0 40.3 1 5 5.9e-09 8.2e-06 26.0 0.4 1 23 58 80 58 80 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 IKZF1-209 - 432 1.1e-14 54.0 40.3 2 5 5e-06 0.0069 16.8 4.7 1 23 86 108 86 108 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 IKZF1-209 - 432 1.1e-14 54.0 40.3 3 5 9.2e-07 0.0013 19.1 5.1 1 23 114 137 114 137 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 IKZF1-209 - 432 1.1e-14 54.0 40.3 4 5 0.14 1.9e+02 2.8 0.9 1 20 375 394 375 395 0.84 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 IKZF1-209 - 432 1.1e-14 54.0 40.3 5 5 0.00071 0.98 10.0 1.4 1 23 403 427 403 427 0.91 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 IKZF1-209 - 432 1.3e-09 38.1 37.1 1 5 1.2e-07 0.00016 22.2 0.4 1 23 58 80 58 81 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 IKZF1-209 - 432 1.3e-09 38.1 37.1 2 5 0.00039 0.53 11.3 3.5 1 23 86 108 86 109 0.91 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 IKZF1-209 - 432 1.3e-09 38.1 37.1 3 5 0.00029 0.4 11.6 4.8 1 24 114 137 114 137 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 IKZF1-209 - 432 1.3e-09 38.1 37.1 4 5 0.011 16 6.7 0.7 1 20 375 394 375 395 0.89 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 IKZF1-209 - 432 1.3e-09 38.1 37.1 5 5 0.019 26 6.0 0.8 1 20 403 422 403 424 0.80 C2H2-type zinc finger # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/IKZF1-209.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/IKZF1-209.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/IKZF1-209.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/IKZF1-209.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/IKZF1-209.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:54:50 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 IKZF1-210 - 477 4.8e-14 52.1 30.5 1 6 4 5.5e+03 -1.9 0.1 15 21 117 123 113 123 0.80 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 IKZF1-210 - 477 4.8e-14 52.1 30.5 2 6 1e-09 1.4e-06 28.4 0.2 2 25 132 155 132 156 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 IKZF1-210 - 477 4.8e-14 52.1 30.5 3 6 1.8e-09 2.4e-06 27.7 3.9 1 24 159 182 159 184 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 IKZF1-210 - 477 4.8e-14 52.1 30.5 4 6 0.22 3.1e+02 2.1 0.1 1 13 187 199 187 202 0.84 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 IKZF1-210 - 477 4.8e-14 52.1 30.5 5 6 0.11 1.5e+02 3.0 0.1 13 22 418 427 412 430 0.77 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 IKZF1-210 - 477 4.8e-14 52.1 30.5 6 6 0.0092 13 6.5 2.2 4 22 437 455 434 457 0.89 Zinc-finger double domain zf-C2H2 PF00096.26 23 IKZF1-210 - 477 2.6e-12 46.5 31.8 1 5 0.0018 2.4 8.8 0.1 2 23 118 139 117 139 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 IKZF1-210 - 477 2.6e-12 46.5 31.8 2 5 6.7e-09 9.2e-06 25.8 0.4 1 23 145 167 145 167 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 IKZF1-210 - 477 2.6e-12 46.5 31.8 3 5 5.7e-06 0.0078 16.6 4.7 1 23 173 195 173 195 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 IKZF1-210 - 477 2.6e-12 46.5 31.8 4 5 0.15 2.1e+02 2.6 0.9 1 20 420 439 420 440 0.84 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 IKZF1-210 - 477 2.6e-12 46.5 31.8 5 5 0.0008 1.1 9.8 1.4 1 23 448 472 448 472 0.91 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 IKZF1-210 - 477 6.8e-09 35.8 29.0 1 5 0.012 16 6.6 0.1 2 23 118 139 117 140 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 IKZF1-210 - 477 6.8e-09 35.8 29.0 2 5 1.3e-07 0.00018 22.0 0.4 1 23 145 167 145 168 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 IKZF1-210 - 477 6.8e-09 35.8 29.0 3 5 0.00044 0.6 11.1 3.5 1 23 173 195 173 196 0.91 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 IKZF1-210 - 477 6.8e-09 35.8 29.0 4 5 0.013 18 6.5 0.7 1 20 420 439 420 440 0.89 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 IKZF1-210 - 477 6.8e-09 35.8 29.0 5 5 0.021 29 5.8 0.8 1 20 448 467 448 469 0.80 C2H2-type zinc finger # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/IKZF1-210.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/IKZF1-210.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/IKZF1-210.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/IKZF1-210.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/IKZF1-210.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:54:50 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/IKZF1-211.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/IKZF1-211.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/IKZF1-211.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/IKZF1-211.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/IKZF1-211.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:54:51 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/IKZF1-212.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/IKZF1-212.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/IKZF1-212.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/IKZF1-212.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/IKZF1-212.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:54:51 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 IKZF1-213 - 489 3.2e-19 68.4 34.7 1 6 4.1 5.6e+03 -1.9 0.1 15 21 87 93 83 93 0.80 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 IKZF1-213 - 489 3.2e-19 68.4 34.7 2 6 1.1e-09 1.5e-06 28.4 0.2 2 25 102 125 102 126 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 IKZF1-213 - 489 3.2e-19 68.4 34.7 3 6 1.8e-09 2.5e-06 27.6 3.9 1 24 129 152 129 154 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 IKZF1-213 - 489 3.2e-19 68.4 34.7 4 6 1e-07 0.00014 22.1 0.9 1 26 157 182 157 182 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 IKZF1-213 - 489 3.2e-19 68.4 34.7 5 6 0.11 1.6e+02 3.0 0.1 13 22 430 439 424 442 0.77 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 IKZF1-213 - 489 3.2e-19 68.4 34.7 6 6 0.0095 13 6.4 2.2 4 22 449 467 446 469 0.89 Zinc-finger double domain zf-C2H2 PF00096.26 23 IKZF1-213 - 489 3.5e-16 58.6 44.9 1 6 0.0018 2.5 8.7 0.1 2 23 88 109 87 109 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 IKZF1-213 - 489 3.5e-16 58.6 44.9 2 6 6.9e-09 9.5e-06 25.8 0.4 1 23 115 137 115 137 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 IKZF1-213 - 489 3.5e-16 58.6 44.9 3 6 5.8e-06 0.008 16.6 4.7 1 23 143 165 143 165 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 IKZF1-213 - 489 3.5e-16 58.6 44.9 4 6 1.1e-06 0.0015 18.9 5.1 1 23 171 194 171 194 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 IKZF1-213 - 489 3.5e-16 58.6 44.9 5 6 0.16 2.2e+02 2.6 0.9 1 20 432 451 432 452 0.84 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 IKZF1-213 - 489 3.5e-16 58.6 44.9 6 6 0.00083 1.1 9.8 1.4 1 23 460 484 460 484 0.91 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 IKZF1-213 - 489 2.1e-10 40.5 41.8 1 6 0.012 17 6.6 0.1 2 23 88 109 87 110 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 IKZF1-213 - 489 2.1e-10 40.5 41.8 2 6 1.4e-07 0.00019 22.0 0.4 1 23 115 137 115 138 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 IKZF1-213 - 489 2.1e-10 40.5 41.8 3 6 0.00045 0.62 11.1 3.5 1 23 143 165 143 166 0.91 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 IKZF1-213 - 489 2.1e-10 40.5 41.8 4 6 0.00034 0.47 11.4 4.8 1 24 171 194 171 194 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 IKZF1-213 - 489 2.1e-10 40.5 41.8 5 6 0.013 18 6.5 0.7 1 20 432 451 432 452 0.89 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 IKZF1-213 - 489 2.1e-10 40.5 41.8 6 6 0.022 30 5.8 0.8 1 20 460 479 460 481 0.80 C2H2-type zinc finger # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/IKZF1-213.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/IKZF1-213.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/IKZF1-213.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/IKZF1-213.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/IKZF1-213.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:54:51 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/IKZF1-214.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/IKZF1-214.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/IKZF1-214.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/IKZF1-214.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/IKZF1-214.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:54:52 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/IKZF1-215.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/IKZF1-215.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/IKZF1-215.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/IKZF1-215.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/IKZF1-215.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:54:52 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/IKZF1-216.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/IKZF1-216.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/IKZF1-216.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/IKZF1-216.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/IKZF1-216.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:54:52 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-C2H2 PF00096.26 23 IKZF1-217 - 268 1.2e-07 31.8 16.7 1 3 4e-09 4.5e-06 26.8 0.4 1 23 78 100 78 100 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 IKZF1-217 - 268 1.2e-07 31.8 16.7 2 3 0.095 1.1e+02 3.6 0.9 1 20 211 230 211 231 0.84 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 IKZF1-217 - 268 1.2e-07 31.8 16.7 3 3 0.00048 0.53 10.8 1.4 1 23 239 263 239 263 0.91 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 IKZF1-217 - 268 4.3e-07 30.2 13.2 1 3 8.1e-08 9.1e-05 23.0 0.4 1 23 78 100 78 101 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 IKZF1-217 - 268 4.3e-07 30.2 13.2 2 3 0.0077 8.6 7.5 0.7 1 20 211 230 211 231 0.89 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 IKZF1-217 - 268 4.3e-07 30.2 13.2 3 3 0.013 14 6.8 0.8 1 20 239 258 239 260 0.80 C2H2-type zinc finger # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/IKZF1-217.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/IKZF1-217.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/IKZF1-217.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/IKZF1-217.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/IKZF1-217.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:54:53 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/IKZF1-218.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/IKZF1-218.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/IKZF1-218.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/IKZF1-218.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/IKZF1-218.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:54:53 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/IKZF1-219.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/IKZF1-219.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/IKZF1-219.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/IKZF1-219.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/IKZF1-219.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:54:53 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/IKZF1-220.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/IKZF1-220.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/IKZF1-220.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/IKZF1-220.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/IKZF1-220.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:54:54 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 IKZF1-221 - 519 4.8e-19 67.9 34.7 1 6 4.4 6e+03 -2.0 0.1 15 21 117 123 113 123 0.80 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 IKZF1-221 - 519 4.8e-19 67.9 34.7 2 6 1.1e-09 1.6e-06 28.3 0.2 2 25 132 155 132 156 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 IKZF1-221 - 519 4.8e-19 67.9 34.7 3 6 2e-09 2.7e-06 27.5 3.9 1 24 159 182 159 184 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 IKZF1-221 - 519 4.8e-19 67.9 34.7 4 6 1.1e-07 0.00016 22.0 0.9 1 26 187 212 187 212 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 IKZF1-221 - 519 4.8e-19 67.9 34.7 5 6 0.12 1.7e+02 2.9 0.1 13 22 460 469 454 472 0.77 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 IKZF1-221 - 519 4.8e-19 67.9 34.7 6 6 0.01 14 6.3 2.2 5 22 480 497 476 499 0.89 Zinc-finger double domain zf-C2H2 PF00096.26 23 IKZF1-221 - 519 5.5e-16 58.0 44.9 1 6 0.0019 2.7 8.6 0.1 2 23 118 139 117 139 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 IKZF1-221 - 519 5.5e-16 58.0 44.9 2 6 7.4e-09 1e-05 25.7 0.4 1 23 145 167 145 167 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 IKZF1-221 - 519 5.5e-16 58.0 44.9 3 6 6.3e-06 0.0086 16.5 4.7 1 23 173 195 173 195 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 IKZF1-221 - 519 5.5e-16 58.0 44.9 4 6 1.1e-06 0.0016 18.8 5.1 1 23 201 224 201 224 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 IKZF1-221 - 519 5.5e-16 58.0 44.9 5 6 0.17 2.4e+02 2.5 0.9 1 20 462 481 462 482 0.84 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 IKZF1-221 - 519 5.5e-16 58.0 44.9 6 6 0.00089 1.2 9.7 1.4 1 23 490 514 490 514 0.91 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 IKZF1-221 - 519 3.3e-10 39.9 41.8 1 6 0.013 18 6.5 0.1 2 23 118 139 117 140 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 IKZF1-221 - 519 3.3e-10 39.9 41.8 2 6 1.5e-07 0.0002 21.9 0.4 1 23 145 167 145 168 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 IKZF1-221 - 519 3.3e-10 39.9 41.8 3 6 0.00049 0.67 11.0 3.5 1 23 173 195 173 196 0.91 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 IKZF1-221 - 519 3.3e-10 39.9 41.8 4 6 0.00037 0.51 11.3 4.8 1 24 201 224 201 224 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 IKZF1-221 - 519 3.3e-10 39.9 41.8 5 6 0.014 19 6.4 0.7 1 20 462 481 462 482 0.89 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 IKZF1-221 - 519 3.3e-10 39.9 41.8 6 6 0.024 33 5.7 0.8 1 20 490 509 490 511 0.80 C2H2-type zinc finger # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/IKZF1-221.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/IKZF1-221.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/IKZF1-221.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/IKZF1-221.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/IKZF1-221.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:54:54 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/IKZF1-222.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/IKZF1-222.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/IKZF1-222.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/IKZF1-222.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/IKZF1-222.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:54:55 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/IKZF1-223.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/IKZF1-223.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/IKZF1-223.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/IKZF1-223.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/IKZF1-223.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:54:55 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 IKZF2-201 - 532 8e-19 67.1 34.7 1 6 1.1 1.6e+03 -0.2 0.4 14 21 117 124 113 127 0.81 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 IKZF2-201 - 532 8e-19 67.1 34.7 2 6 5e-09 6.9e-06 26.3 0.7 2 25 133 156 133 157 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 IKZF2-201 - 532 8e-19 67.1 34.7 3 6 6.2e-11 8.5e-08 32.3 2.7 1 24 160 183 160 185 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 IKZF2-201 - 532 8e-19 67.1 34.7 4 6 1.9e-07 0.00027 21.2 1.4 1 26 188 213 188 213 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 IKZF2-201 - 532 8e-19 67.1 34.7 5 6 0.23 3.2e+02 2.0 0.0 14 22 476 484 466 487 0.75 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 IKZF2-201 - 532 8e-19 67.1 34.7 6 6 0.033 45 4.7 0.6 5 23 495 513 491 514 0.85 Zinc-finger double domain zf-C2H2 PF00096.26 23 IKZF2-201 - 532 9.3e-16 57.3 43.1 1 6 0.00036 0.49 11.0 0.3 2 23 119 140 118 140 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 IKZF2-201 - 532 9.3e-16 57.3 43.1 2 6 5.4e-08 7.5e-05 23.0 1.3 1 23 146 168 146 168 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 IKZF2-201 - 532 9.3e-16 57.3 43.1 3 6 6e-06 0.0082 16.5 2.8 1 23 174 196 174 196 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 IKZF2-201 - 532 9.3e-16 57.3 43.1 4 6 1.5e-06 0.0021 18.4 5.9 1 23 202 225 202 225 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 IKZF2-201 - 532 9.3e-16 57.3 43.1 5 6 0.25 3.5e+02 2.0 0.9 1 20 477 496 477 497 0.84 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 IKZF2-201 - 532 9.3e-16 57.3 43.1 6 6 0.0011 1.6 9.4 0.1 2 22 506 526 505 529 0.89 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 IKZF2-201 - 532 1.6e-11 44.0 41.4 1 6 0.0053 7.3 7.7 0.3 2 23 119 140 118 141 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 IKZF2-201 - 532 1.6e-11 44.0 41.4 2 6 6e-07 0.00083 20.0 1.1 1 23 146 168 146 169 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 IKZF2-201 - 532 1.6e-11 44.0 41.4 3 6 3.8e-05 0.052 14.4 2.2 1 23 174 196 174 197 0.87 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 IKZF2-201 - 532 1.6e-11 44.0 41.4 4 6 0.00039 0.54 11.2 5.5 1 24 202 225 202 225 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 IKZF2-201 - 532 1.6e-11 44.0 41.4 5 6 0.015 20 6.3 0.8 1 20 477 496 477 497 0.89 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 IKZF2-201 - 532 1.6e-11 44.0 41.4 6 6 0.012 16 6.7 0.1 2 20 506 524 505 526 0.84 C2H2-type zinc finger # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/IKZF2-201.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/IKZF2-201.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/IKZF2-201.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/IKZF2-201.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/IKZF2-201.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:54:55 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 IKZF2-202 - 500 6.2e-16 58.0 25.5 1 5 0.00051 0.76 10.3 0.1 11 25 110 124 107 125 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 IKZF2-202 - 500 6.2e-16 58.0 25.5 2 5 5.3e-11 7.9e-08 32.4 2.7 1 24 128 151 128 153 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 IKZF2-202 - 500 6.2e-16 58.0 25.5 3 5 1.7e-07 0.00025 21.3 1.4 1 26 156 181 156 181 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 IKZF2-202 - 500 6.2e-16 58.0 25.5 4 5 0.2 3e+02 2.1 0.0 14 22 444 452 434 455 0.75 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 IKZF2-202 - 500 6.2e-16 58.0 25.5 5 5 0.028 42 4.8 0.6 5 23 463 481 459 482 0.85 Zinc-finger double domain zf-C2H2 PF00096.26 23 IKZF2-202 - 500 1.1e-13 50.8 37.4 1 5 4.6e-08 6.9e-05 23.1 1.3 1 23 114 136 114 136 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 IKZF2-202 - 500 1.1e-13 50.8 37.4 2 5 5.1e-06 0.0076 16.6 2.8 1 23 142 164 142 164 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 IKZF2-202 - 500 1.1e-13 50.8 37.4 3 5 1.3e-06 0.0019 18.5 5.9 1 23 170 193 170 193 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 IKZF2-202 - 500 1.1e-13 50.8 37.4 4 5 0.22 3.3e+02 2.1 0.9 1 20 445 464 445 465 0.84 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 IKZF2-202 - 500 1.1e-13 50.8 37.4 5 5 0.00098 1.5 9.5 0.1 2 22 474 494 473 497 0.89 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 IKZF2-202 - 500 1.5e-10 41.0 35.3 1 5 5.1e-07 0.00077 20.1 1.1 1 23 114 136 114 137 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 IKZF2-202 - 500 1.5e-10 41.0 35.3 2 5 3.2e-05 0.048 14.5 2.2 1 23 142 164 142 165 0.87 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 IKZF2-202 - 500 1.5e-10 41.0 35.3 3 5 0.00033 0.5 11.3 5.5 1 24 170 193 170 193 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 IKZF2-202 - 500 1.5e-10 41.0 35.3 4 5 0.013 19 6.4 0.8 1 20 445 464 445 465 0.89 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 IKZF2-202 - 500 1.5e-10 41.0 35.3 5 5 0.01 15 6.8 0.1 2 20 474 492 473 494 0.84 C2H2-type zinc finger # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/IKZF2-202.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/IKZF2-202.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/IKZF2-202.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/IKZF2-202.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/IKZF2-202.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:54:56 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/IKZF2-203.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/IKZF2-203.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/IKZF2-203.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/IKZF2-203.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/IKZF2-203.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:54:56 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 IKZF2-204 - 473 3.6e-19 68.2 34.7 1 6 0.92 1.4e+03 0.0 0.4 14 21 58 65 54 68 0.81 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 IKZF2-204 - 473 3.6e-19 68.2 34.7 2 6 4e-09 6e-06 26.5 0.7 2 25 74 97 74 98 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 IKZF2-204 - 473 3.6e-19 68.2 34.7 3 6 4.9e-11 7.4e-08 32.5 2.7 1 24 101 124 101 126 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 IKZF2-204 - 473 3.6e-19 68.2 34.7 4 6 1.6e-07 0.00023 21.4 1.4 1 26 129 154 129 154 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 IKZF2-204 - 473 3.6e-19 68.2 34.7 5 6 0.19 2.8e+02 2.2 0.0 14 22 417 425 407 428 0.75 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 IKZF2-204 - 473 3.6e-19 68.2 34.7 6 6 0.026 39 4.9 0.6 5 23 436 454 432 455 0.85 Zinc-finger double domain zf-C2H2 PF00096.26 23 IKZF2-204 - 473 4.1e-16 58.5 43.1 1 6 0.00029 0.43 11.1 0.3 2 23 60 81 59 81 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 IKZF2-204 - 473 4.1e-16 58.5 43.1 2 6 4.3e-08 6.5e-05 23.2 1.3 1 23 87 109 87 109 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 IKZF2-204 - 473 4.1e-16 58.5 43.1 3 6 4.8e-06 0.0071 16.7 2.8 1 23 115 137 115 137 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 IKZF2-204 - 473 4.1e-16 58.5 43.1 4 6 1.2e-06 0.0018 18.6 5.9 1 23 143 166 143 166 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 IKZF2-204 - 473 4.1e-16 58.5 43.1 5 6 0.2 3.1e+02 2.2 0.9 1 20 418 437 418 438 0.84 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 IKZF2-204 - 473 4.1e-16 58.5 43.1 6 6 0.00091 1.4 9.6 0.1 2 22 447 467 446 470 0.89 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 IKZF2-204 - 473 3.4e-11 43.0 43.5 1 6 0.0042 6.3 7.9 0.3 2 23 60 81 59 82 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 IKZF2-204 - 473 3.4e-11 43.0 43.5 2 6 4.8e-07 0.00072 20.2 1.1 1 23 87 109 87 110 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 IKZF2-204 - 473 3.4e-11 43.0 43.5 3 6 3e-05 0.045 14.6 2.2 1 23 115 137 115 138 0.87 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 IKZF2-204 - 473 3.4e-11 43.0 43.5 4 6 0.00031 0.47 11.4 5.5 1 24 143 166 143 166 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 IKZF2-204 - 473 3.4e-11 43.0 43.5 5 6 0.012 18 6.5 0.8 1 20 418 437 418 438 0.89 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 IKZF2-204 - 473 3.4e-11 43.0 43.5 6 6 0.0093 14 6.8 0.1 2 20 447 465 446 467 0.84 C2H2-type zinc finger # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/IKZF2-204.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/IKZF2-204.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/IKZF2-204.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/IKZF2-204.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/IKZF2-204.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:54:56 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 IKZF2-205 - 239 4.2e-20 71.2 24.8 1 4 0.73 6.3e+02 1.1 0.4 14 21 111 118 107 121 0.81 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 IKZF2-205 - 239 4.2e-20 71.2 24.8 2 4 2.9e-09 2.5e-06 27.7 0.7 2 25 127 150 127 151 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 IKZF2-205 - 239 4.2e-20 71.2 24.8 3 4 3.6e-11 3.1e-08 33.7 2.7 1 24 154 177 154 179 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 IKZF2-205 - 239 4.2e-20 71.2 24.8 4 4 1.1e-07 9.6e-05 22.6 1.4 1 26 182 207 182 207 0.93 Zinc-finger double domain zf-C2H2 PF00096.26 23 IKZF2-205 - 239 2e-16 59.4 30.7 1 4 0.00021 0.18 12.3 0.3 2 23 113 134 112 134 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 IKZF2-205 - 239 2e-16 59.4 30.7 2 4 3.2e-08 2.7e-05 24.4 1.3 1 23 140 162 140 162 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 IKZF2-205 - 239 2e-16 59.4 30.7 3 4 3.5e-06 0.003 17.9 2.8 1 23 168 190 168 190 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 IKZF2-205 - 239 2e-16 59.4 30.7 4 4 8.8e-07 0.00075 19.8 5.9 1 23 196 219 196 219 0.96 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 IKZF2-205 - 239 3.8e-11 42.8 30.8 1 4 0.0031 2.6 9.1 0.3 2 23 113 134 112 135 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 IKZF2-205 - 239 3.8e-11 42.8 30.8 2 4 3.5e-07 0.0003 21.4 1.1 1 23 140 162 140 163 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 IKZF2-205 - 239 3.8e-11 42.8 30.8 3 4 2.2e-05 0.019 15.8 2.2 1 23 168 190 168 191 0.87 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 IKZF2-205 - 239 3.8e-11 42.8 30.8 4 4 0.00023 0.19 12.6 5.5 1 24 196 219 196 219 0.96 C2H2-type zinc finger # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/IKZF2-205.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/IKZF2-205.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/IKZF2-205.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/IKZF2-205.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/IKZF2-205.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:54:57 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/IKZF2-206.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/IKZF2-206.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/IKZF2-206.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/IKZF2-206.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/IKZF2-206.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:54:57 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 IKZF2-207 - 526 7.5e-19 67.2 34.7 1 6 1.1 1.6e+03 -0.2 0.4 14 21 111 118 107 121 0.81 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 IKZF2-207 - 526 7.5e-19 67.2 34.7 2 6 4.9e-09 6.8e-06 26.3 0.7 2 25 127 150 127 151 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 IKZF2-207 - 526 7.5e-19 67.2 34.7 3 6 6.1e-11 8.4e-08 32.3 2.7 1 24 154 177 154 179 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 IKZF2-207 - 526 7.5e-19 67.2 34.7 4 6 1.9e-07 0.00026 21.3 1.4 1 26 182 207 182 207 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 IKZF2-207 - 526 7.5e-19 67.2 34.7 5 6 0.23 3.2e+02 2.0 0.0 14 22 470 478 460 481 0.75 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 IKZF2-207 - 526 7.5e-19 67.2 34.7 6 6 0.032 44 4.7 0.6 5 23 489 507 485 508 0.85 Zinc-finger double domain zf-C2H2 PF00096.26 23 IKZF2-207 - 526 8.7e-16 57.4 43.1 1 6 0.00035 0.48 11.0 0.3 2 23 113 134 112 134 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 IKZF2-207 - 526 8.7e-16 57.4 43.1 2 6 5.3e-08 7.4e-05 23.0 1.3 1 23 140 162 140 162 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 IKZF2-207 - 526 8.7e-16 57.4 43.1 3 6 5.9e-06 0.0081 16.6 2.8 1 23 168 190 168 190 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 IKZF2-207 - 526 8.7e-16 57.4 43.1 4 6 1.5e-06 0.002 18.4 5.9 1 23 196 219 196 219 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 IKZF2-207 - 526 8.7e-16 57.4 43.1 5 6 0.25 3.5e+02 2.0 0.9 1 20 471 490 471 491 0.84 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 IKZF2-207 - 526 8.7e-16 57.4 43.1 6 6 0.0011 1.6 9.4 0.1 2 22 500 520 499 523 0.89 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 IKZF2-207 - 526 1.6e-11 44.0 41.4 1 6 0.0052 7.2 7.7 0.3 2 23 113 134 112 135 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 IKZF2-207 - 526 1.6e-11 44.0 41.4 2 6 5.9e-07 0.00082 20.0 1.1 1 23 140 162 140 163 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 IKZF2-207 - 526 1.6e-11 44.0 41.4 3 6 3.7e-05 0.051 14.4 2.2 1 23 168 190 168 191 0.87 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 IKZF2-207 - 526 1.6e-11 44.0 41.4 4 6 0.00038 0.53 11.3 5.5 1 24 196 219 196 219 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 IKZF2-207 - 526 1.6e-11 44.0 41.4 5 6 0.015 20 6.3 0.8 1 20 471 490 471 491 0.89 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 IKZF2-207 - 526 1.6e-11 44.0 41.4 6 6 0.011 16 6.7 0.1 2 20 500 518 499 520 0.84 C2H2-type zinc finger # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/IKZF2-207.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/IKZF2-207.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/IKZF2-207.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/IKZF2-207.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/IKZF2-207.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:54:58 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/IKZF2-208.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/IKZF2-208.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/IKZF2-208.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/IKZF2-208.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/IKZF2-208.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:54:58 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/IKZF2-209.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/IKZF2-209.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/IKZF2-209.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/IKZF2-209.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/IKZF2-209.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:54:58 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 IKZF2-210 - 452 1e-15 57.3 28.4 1 6 0.00041 0.67 10.5 0.1 11 25 110 124 107 125 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 IKZF2-210 - 452 1e-15 57.3 28.4 2 6 4.3e-11 7e-08 32.6 2.7 1 24 128 151 128 153 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 IKZF2-210 - 452 1e-15 57.3 28.4 3 6 1.3e-07 0.00022 21.5 1.4 1 26 156 181 156 181 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 IKZF2-210 - 452 1e-15 57.3 28.4 4 6 1.7 2.7e+03 -0.9 0.0 8 13 209 214 208 221 0.79 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 IKZF2-210 - 452 1e-15 57.3 28.4 5 6 0.16 2.7e+02 2.3 0.0 14 22 394 404 386 407 0.75 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 IKZF2-210 - 452 1e-15 57.3 28.4 6 6 0.023 37 5.0 0.6 5 23 415 433 411 434 0.85 Zinc-finger double domain zf-C2H2 PF00096.26 23 IKZF2-210 - 452 2.1e-12 46.8 42.3 1 5 3.8e-08 6.1e-05 23.2 1.3 1 23 114 136 114 136 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 IKZF2-210 - 452 2.1e-12 46.8 42.3 2 5 4.1e-06 0.0068 16.8 2.8 1 23 142 164 142 164 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 IKZF2-210 - 452 2.1e-12 46.8 42.3 3 5 1e-06 0.0017 18.7 5.9 1 23 170 193 170 193 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 IKZF2-210 - 452 2.1e-12 46.8 42.3 4 5 0.18 2.9e+02 2.2 0.9 1 20 397 416 397 417 0.84 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 IKZF2-210 - 452 2.1e-12 46.8 42.3 5 5 0.00079 1.3 9.6 0.1 2 22 426 446 425 449 0.89 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 IKZF2-210 - 452 3.8e-10 39.7 37.4 1 5 4.2e-07 0.00068 20.3 1.1 1 23 114 136 114 137 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 IKZF2-210 - 452 3.8e-10 39.7 37.4 2 5 2.6e-05 0.042 14.7 2.2 1 23 142 164 142 165 0.87 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 IKZF2-210 - 452 3.8e-10 39.7 37.4 3 5 0.00027 0.44 11.5 5.5 1 24 170 193 170 193 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 IKZF2-210 - 452 3.8e-10 39.7 37.4 4 5 0.01 17 6.6 0.8 1 20 397 416 397 417 0.89 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 IKZF2-210 - 452 3.8e-10 39.7 37.4 5 5 0.0081 13 6.9 0.1 2 20 426 444 425 446 0.84 C2H2-type zinc finger # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/IKZF2-210.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/IKZF2-210.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/IKZF2-210.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/IKZF2-210.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/IKZF2-210.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:54:59 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/IKZF2-211.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/IKZF2-211.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/IKZF2-211.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/IKZF2-211.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/IKZF2-211.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:54:59 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 IKZF2-212 - 447 3.2e-16 58.9 25.5 1 5 0.00044 0.66 10.5 0.1 11 25 57 71 54 72 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 IKZF2-212 - 447 3.2e-16 58.9 25.5 2 5 4.6e-11 6.9e-08 32.6 2.7 1 24 75 98 75 100 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 IKZF2-212 - 447 3.2e-16 58.9 25.5 3 5 1.4e-07 0.00022 21.5 1.4 1 26 103 128 103 128 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 IKZF2-212 - 447 3.2e-16 58.9 25.5 4 5 0.18 2.6e+02 2.3 0.0 14 22 389 399 381 402 0.75 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 IKZF2-212 - 447 3.2e-16 58.9 25.5 5 5 0.025 37 5.0 0.6 5 23 410 428 406 429 0.85 Zinc-finger double domain zf-C2H2 PF00096.26 23 IKZF2-212 - 447 1.9e-12 46.9 42.3 1 5 4.1e-08 6.1e-05 23.3 1.3 1 23 61 83 61 83 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 IKZF2-212 - 447 1.9e-12 46.9 42.3 2 5 4.5e-06 0.0067 16.8 2.8 1 23 89 111 89 111 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 IKZF2-212 - 447 1.9e-12 46.9 42.3 3 5 1.1e-06 0.0017 18.7 5.9 1 23 117 140 117 140 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 IKZF2-212 - 447 1.9e-12 46.9 42.3 4 5 0.19 2.9e+02 2.2 0.9 1 20 392 411 392 412 0.84 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 IKZF2-212 - 447 1.9e-12 46.9 42.3 5 5 0.00085 1.3 9.6 0.1 2 22 421 441 420 444 0.89 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 IKZF2-212 - 447 3.5e-10 39.8 37.4 1 5 4.5e-07 0.00067 20.3 1.1 1 23 61 83 61 84 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 IKZF2-212 - 447 3.5e-10 39.8 37.4 2 5 2.8e-05 0.042 14.7 2.2 1 23 89 111 89 112 0.87 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 IKZF2-212 - 447 3.5e-10 39.8 37.4 3 5 0.00029 0.43 11.5 5.5 1 24 117 140 117 140 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 IKZF2-212 - 447 3.5e-10 39.8 37.4 4 5 0.011 17 6.6 0.8 1 20 392 411 392 412 0.89 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 IKZF2-212 - 447 3.5e-10 39.8 37.4 5 5 0.0087 13 6.9 0.1 2 20 421 439 420 441 0.84 C2H2-type zinc finger # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/IKZF2-212.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/IKZF2-212.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/IKZF2-212.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/IKZF2-212.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/IKZF2-212.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:54:59 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 IKZF2-213 - 454 2.9e-11 43.3 19.4 1 5 0.00045 0.68 10.5 0.1 11 25 110 124 107 125 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 IKZF2-213 - 454 2.9e-11 43.3 19.4 2 5 4.7e-11 7e-08 32.6 2.7 1 24 128 151 128 153 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 IKZF2-213 - 454 2.9e-11 43.3 19.4 3 5 0.45 6.7e+02 1.0 0.0 1 12 156 167 156 168 0.83 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 IKZF2-213 - 454 2.9e-11 43.3 19.4 4 5 0.18 2.7e+02 2.3 0.0 14 22 396 406 388 409 0.75 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 IKZF2-213 - 454 2.9e-11 43.3 19.4 5 5 0.025 37 5.0 0.6 5 23 417 435 413 436 0.85 Zinc-finger double domain zf-C2H2 PF00096.26 23 IKZF2-213 - 454 1.5e-08 34.6 28.4 1 4 4.1e-08 6.2e-05 23.2 1.3 1 23 114 136 114 136 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 IKZF2-213 - 454 1.5e-08 34.6 28.4 2 4 4.6e-06 0.0068 16.8 2.8 1 23 142 164 142 164 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 IKZF2-213 - 454 1.5e-08 34.6 28.4 3 4 0.19 2.9e+02 2.2 0.9 1 20 399 418 399 419 0.84 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 IKZF2-213 - 454 1.5e-08 34.6 28.4 4 4 0.00087 1.3 9.6 0.1 2 22 428 448 427 451 0.89 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 IKZF2-213 - 454 1.6e-08 34.7 24.0 1 4 4.6e-07 0.00068 20.3 1.1 1 23 114 136 114 137 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 IKZF2-213 - 454 1.6e-08 34.7 24.0 2 4 2.9e-05 0.043 14.7 2.2 1 23 142 164 142 165 0.87 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 IKZF2-213 - 454 1.6e-08 34.7 24.0 3 4 0.011 17 6.6 0.8 1 20 399 418 399 419 0.89 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 IKZF2-213 - 454 1.6e-08 34.7 24.0 4 4 0.0089 13 6.9 0.1 2 20 428 446 427 448 0.84 C2H2-type zinc finger # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/IKZF2-213.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/IKZF2-213.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/IKZF2-213.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/IKZF2-213.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/IKZF2-213.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:55:00 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/IKZF2-214.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/IKZF2-214.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/IKZF2-214.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/IKZF2-214.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/IKZF2-214.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:55:00 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 IKZF3-201 - 263 1.3e-23 82.3 19.1 1 4 3.4 2.9e+03 -1.0 0.0 16 21 119 124 100 126 0.66 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 IKZF3-201 - 263 1.3e-23 82.3 19.1 2 4 7.8e-10 6.7e-07 29.5 0.2 2 25 133 156 133 157 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 IKZF3-201 - 263 1.3e-23 82.3 19.1 3 4 2.1e-10 1.8e-07 31.3 3.9 1 23 160 182 160 183 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 IKZF3-201 - 263 1.3e-23 82.3 19.1 4 4 3.7e-10 3.2e-07 30.5 0.9 1 26 188 213 188 213 0.93 Zinc-finger double domain zf-C2H2 PF00096.26 23 IKZF3-201 - 263 7.2e-16 57.7 25.9 1 4 0.0023 2 9.0 1.1 3 23 120 140 118 140 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 IKZF3-201 - 263 7.2e-16 57.7 25.9 2 4 5.1e-09 4.4e-06 26.9 0.4 1 23 146 168 146 168 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 IKZF3-201 - 263 7.2e-16 57.7 25.9 3 4 2e-05 0.017 15.5 4.2 1 23 174 196 174 196 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 IKZF3-201 - 263 7.2e-16 57.7 25.9 4 4 6.1e-07 0.00052 20.3 0.7 1 20 202 221 202 223 0.94 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 IKZF3-201 - 263 2.4e-10 40.4 28.3 1 4 0.012 11 7.2 1.2 3 23 120 140 119 141 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 IKZF3-201 - 263 2.4e-10 40.4 28.3 2 4 1.3e-07 0.00011 22.7 0.3 1 23 146 168 146 169 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 IKZF3-201 - 263 2.4e-10 40.4 28.3 3 4 0.00046 0.39 11.7 3.2 1 23 174 196 174 197 0.85 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 IKZF3-201 - 263 2.4e-10 40.4 28.3 4 4 7.5e-05 0.064 14.1 2.3 1 22 202 223 202 225 0.93 C2H2-type zinc finger # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/IKZF3-201.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/IKZF3-201.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/IKZF3-201.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/IKZF3-201.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/IKZF3-201.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:55:00 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/IKZF3-202.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/IKZF3-202.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/IKZF3-202.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/IKZF3-202.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/IKZF3-202.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:55:01 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 IKZF3-203 - 509 1.6e-22 78.9 32.1 1 6 9.3 1.2e+04 -3.0 0.1 16 21 119 124 111 125 0.88 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 IKZF3-203 - 509 1.6e-22 78.9 32.1 2 6 1.2e-09 1.5e-06 28.3 0.2 2 25 133 156 133 157 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 IKZF3-203 - 509 1.6e-22 78.9 32.1 3 6 3.2e-10 4.1e-07 30.1 3.9 1 23 160 182 160 183 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 IKZF3-203 - 509 1.6e-22 78.9 32.1 4 6 5.8e-10 7.4e-07 29.3 0.9 1 26 188 213 188 213 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 IKZF3-203 - 509 1.6e-22 78.9 32.1 5 6 0.71 9.1e+02 0.6 0.0 15 22 452 459 445 462 0.82 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 IKZF3-203 - 509 1.6e-22 78.9 32.1 6 6 0.007 9 6.9 2.1 5 23 470 488 466 490 0.90 Zinc-finger double domain zf-C2H2 PF00096.26 23 IKZF3-203 - 509 2.1e-15 56.2 40.8 1 6 0.0035 4.5 7.9 1.1 3 23 120 140 118 140 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 IKZF3-203 - 509 2.1e-15 56.2 40.8 2 6 7.8e-09 1e-05 25.7 0.4 1 23 146 168 146 168 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 IKZF3-203 - 509 2.1e-15 56.2 40.8 3 6 3.1e-05 0.04 14.4 4.2 1 23 174 196 174 196 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 IKZF3-203 - 509 2.1e-15 56.2 40.8 4 6 9.3e-07 0.0012 19.2 0.7 1 20 202 221 202 223 0.94 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 IKZF3-203 - 509 2.1e-15 56.2 40.8 5 6 0.21 2.7e+02 2.3 0.5 1 20 452 471 452 472 0.80 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 IKZF3-203 - 509 2.1e-15 56.2 40.8 6 6 0.00046 0.59 10.7 1.0 1 23 480 504 480 504 0.92 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 IKZF3-203 - 509 4.6e-11 42.6 40.8 1 6 0.019 24 6.1 1.2 3 23 120 140 119 141 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 IKZF3-203 - 509 4.6e-11 42.6 40.8 2 6 2e-07 0.00026 21.6 0.3 1 23 146 168 146 169 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 IKZF3-203 - 509 4.6e-11 42.6 40.8 3 6 0.00071 0.91 10.5 3.2 1 23 174 196 174 197 0.85 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 IKZF3-203 - 509 4.6e-11 42.6 40.8 4 6 0.00011 0.15 13.0 2.3 1 22 202 223 202 225 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 IKZF3-203 - 509 4.6e-11 42.6 40.8 5 6 0.01 13 7.0 0.4 1 20 452 471 452 472 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 IKZF3-203 - 509 4.6e-11 42.6 40.8 6 6 0.0045 5.8 8.0 0.6 1 21 480 500 480 501 0.91 C2H2-type zinc finger # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/IKZF3-203.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/IKZF3-203.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/IKZF3-203.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/IKZF3-203.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/IKZF3-203.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:55:01 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/IKZF3-204.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/IKZF3-204.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/IKZF3-204.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/IKZF3-204.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/IKZF3-204.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:55:02 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/IKZF3-205.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/IKZF3-205.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/IKZF3-205.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/IKZF3-205.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/IKZF3-205.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:55:02 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/IKZF3-206.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/IKZF3-206.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/IKZF3-206.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/IKZF3-206.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/IKZF3-206.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:55:02 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/IKZF3-207.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/IKZF3-207.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/IKZF3-207.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/IKZF3-207.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/IKZF3-207.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:55:03 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/IKZF3-208.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/IKZF3-208.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/IKZF3-208.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/IKZF3-208.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/IKZF3-208.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:55:03 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/IKZF3-209.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/IKZF3-209.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/IKZF3-209.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/IKZF3-209.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/IKZF3-209.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:55:03 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 IKZF3-210 - 422 9.7e-19 66.9 27.6 1 5 0.00024 0.33 11.5 0.1 11 25 55 69 54 70 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 IKZF3-210 - 422 9.7e-19 66.9 27.6 2 5 2.4e-10 3.2e-07 30.5 3.9 1 23 73 95 73 96 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 IKZF3-210 - 422 9.7e-19 66.9 27.6 3 5 4.3e-10 5.9e-07 29.6 0.9 1 26 101 126 101 126 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 IKZF3-210 - 422 9.7e-19 66.9 27.6 4 5 0.53 7.4e+02 0.9 0.0 15 22 365 372 358 375 0.82 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 IKZF3-210 - 422 9.7e-19 66.9 27.6 5 5 0.0052 7.2 7.2 2.1 5 23 383 401 379 403 0.90 Zinc-finger double domain zf-C2H2 PF00096.26 23 IKZF3-210 - 422 3.9e-15 55.4 32.6 1 5 5.8e-09 8e-06 26.0 0.4 1 23 59 81 59 81 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 IKZF3-210 - 422 3.9e-15 55.4 32.6 2 5 2.3e-05 0.032 14.7 4.2 1 23 87 109 87 109 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 IKZF3-210 - 422 3.9e-15 55.4 32.6 3 5 6.9e-07 0.00095 19.5 0.7 1 20 115 134 115 136 0.94 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 IKZF3-210 - 422 3.9e-15 55.4 32.6 4 5 0.16 2.2e+02 2.6 0.5 1 20 365 384 365 385 0.80 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 IKZF3-210 - 422 3.9e-15 55.4 32.6 5 5 0.00034 0.47 11.0 1.0 1 23 393 417 393 417 0.92 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 IKZF3-210 - 422 2.4e-11 43.4 32.4 1 5 1.5e-07 0.0002 21.9 0.3 1 23 59 81 59 82 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 IKZF3-210 - 422 2.4e-11 43.4 32.4 2 5 0.00052 0.72 10.9 3.2 1 23 87 109 87 110 0.85 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 IKZF3-210 - 422 2.4e-11 43.4 32.4 3 5 8.5e-05 0.12 13.3 2.3 1 22 115 136 115 138 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 IKZF3-210 - 422 2.4e-11 43.4 32.4 4 5 0.0074 10 7.3 0.4 1 20 365 384 365 385 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 IKZF3-210 - 422 2.4e-11 43.4 32.4 5 5 0.0034 4.6 8.3 0.6 1 21 393 413 393 414 0.91 C2H2-type zinc finger # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/IKZF3-210.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/IKZF3-210.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/IKZF3-210.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/IKZF3-210.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/IKZF3-210.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:55:04 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/IKZF3-211.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/IKZF3-211.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/IKZF3-211.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/IKZF3-211.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/IKZF3-211.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:55:04 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/IKZF3-212.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/IKZF3-212.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/IKZF3-212.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/IKZF3-212.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/IKZF3-212.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:55:04 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 IKZF3-213 - 436 5.8e-15 55.0 27.2 1 6 4.4 6.6e+03 -2.1 0.0 16 21 85 90 67 91 0.71 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 IKZF3-213 - 436 5.8e-15 55.0 27.2 2 6 8.5e-10 1.3e-06 28.6 0.2 2 25 99 122 99 123 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 IKZF3-213 - 436 5.8e-15 55.0 27.2 3 6 2.3e-10 3.4e-07 30.4 3.9 1 23 126 148 126 149 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 IKZF3-213 - 436 5.8e-15 55.0 27.2 4 6 1.4 2.1e+03 -0.6 0.1 1 9 154 162 154 165 0.82 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 IKZF3-213 - 436 5.8e-15 55.0 27.2 5 6 0.51 7.6e+02 0.8 0.0 15 22 379 386 372 389 0.82 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 IKZF3-213 - 436 5.8e-15 55.0 27.2 6 6 0.005 7.5 7.2 2.1 5 23 397 415 393 417 0.90 Zinc-finger double domain zf-C2H2 PF00096.26 23 IKZF3-213 - 436 2.1e-11 43.6 33.4 1 5 0.0025 3.7 8.2 1.1 3 23 86 106 84 106 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 IKZF3-213 - 436 2.1e-11 43.6 33.4 2 5 5.5e-09 8.3e-06 26.0 0.4 1 23 112 134 112 134 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 IKZF3-213 - 436 2.1e-11 43.6 33.4 3 5 2.2e-05 0.033 14.7 4.2 1 23 140 162 140 162 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 IKZF3-213 - 436 2.1e-11 43.6 33.4 4 5 0.15 2.2e+02 2.6 0.5 1 20 379 398 379 399 0.80 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 IKZF3-213 - 436 2.1e-11 43.6 33.4 5 5 0.00033 0.49 11.0 1.0 1 23 407 431 407 431 0.92 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 IKZF3-213 - 436 2.5e-09 37.2 30.8 1 5 0.013 20 6.4 1.2 3 23 86 106 85 107 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 IKZF3-213 - 436 2.5e-09 37.2 30.8 2 5 1.4e-07 0.00021 21.8 0.3 1 23 112 134 112 135 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 IKZF3-213 - 436 2.5e-09 37.2 30.8 3 5 0.0005 0.75 10.8 3.2 1 23 140 162 140 163 0.85 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 IKZF3-213 - 436 2.5e-09 37.2 30.8 4 5 0.0071 11 7.2 0.4 1 20 379 398 379 399 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 IKZF3-213 - 436 2.5e-09 37.2 30.8 5 5 0.0032 4.8 8.3 0.6 1 21 407 427 407 428 0.91 C2H2-type zinc finger # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/IKZF3-213.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/IKZF3-213.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/IKZF3-213.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/IKZF3-213.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/IKZF3-213.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:55:05 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/IKZF3-214.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/IKZF3-214.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/IKZF3-214.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/IKZF3-214.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/IKZF3-214.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:55:05 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 IKZF3-215 - 475 4.9e-23 80.5 31.1 1 6 4.9 7.3e+03 -2.3 0.0 16 21 85 90 67 91 0.71 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 IKZF3-215 - 475 4.9e-23 80.5 31.1 2 6 9.5e-10 1.4e-06 28.4 0.2 2 25 99 122 99 123 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 IKZF3-215 - 475 4.9e-23 80.5 31.1 3 6 2.5e-10 3.7e-07 30.3 3.9 1 23 126 148 126 149 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 IKZF3-215 - 475 4.9e-23 80.5 31.1 4 6 4.6e-10 6.8e-07 29.4 0.9 1 26 154 179 154 179 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 IKZF3-215 - 475 4.9e-23 80.5 31.1 5 6 0.56 8.4e+02 0.7 0.0 15 22 418 425 411 428 0.82 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 IKZF3-215 - 475 4.9e-23 80.5 31.1 6 6 0.0055 8.3 7.0 2.1 5 23 436 454 432 456 0.90 Zinc-finger double domain zf-C2H2 PF00096.26 23 IKZF3-215 - 475 1.3e-15 56.9 40.8 1 6 0.0028 4.1 8.0 1.1 3 23 86 106 84 106 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 IKZF3-215 - 475 1.3e-15 56.9 40.8 2 6 6.1e-09 9.2e-06 25.8 0.4 1 23 112 134 112 134 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 IKZF3-215 - 475 1.3e-15 56.9 40.8 3 6 2.4e-05 0.036 14.5 4.2 1 23 140 162 140 162 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 IKZF3-215 - 475 1.3e-15 56.9 40.8 4 6 7.3e-07 0.0011 19.3 0.7 1 20 168 187 168 189 0.94 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 IKZF3-215 - 475 1.3e-15 56.9 40.8 5 6 0.17 2.5e+02 2.4 0.5 1 20 418 437 418 438 0.80 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 IKZF3-215 - 475 1.3e-15 56.9 40.8 6 6 0.00036 0.54 10.8 1.0 1 23 446 470 446 470 0.92 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 IKZF3-215 - 475 2.7e-11 43.3 40.8 1 6 0.015 22 6.2 1.2 3 23 86 106 85 107 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 IKZF3-215 - 475 2.7e-11 43.3 40.8 2 6 1.6e-07 0.00024 21.7 0.3 1 23 112 134 112 135 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 IKZF3-215 - 475 2.7e-11 43.3 40.8 3 6 0.00056 0.83 10.7 3.2 1 23 140 162 140 163 0.85 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 IKZF3-215 - 475 2.7e-11 43.3 40.8 4 6 9e-05 0.13 13.1 2.3 1 22 168 189 168 191 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 IKZF3-215 - 475 2.7e-11 43.3 40.8 5 6 0.0079 12 7.1 0.4 1 20 418 437 418 438 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 IKZF3-215 - 475 2.7e-11 43.3 40.8 6 6 0.0036 5.3 8.1 0.6 1 21 446 466 446 467 0.91 C2H2-type zinc finger # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/IKZF3-215.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/IKZF3-215.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/IKZF3-215.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/IKZF3-215.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/IKZF3-215.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:55:06 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/IKZF3-216.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/IKZF3-216.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/IKZF3-216.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/IKZF3-216.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/IKZF3-216.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:55:06 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 IKZF3-217 - 263 1.3e-23 82.3 19.1 1 4 3.4 2.9e+03 -1.0 0.0 16 21 119 124 100 126 0.66 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 IKZF3-217 - 263 1.3e-23 82.3 19.1 2 4 7.8e-10 6.7e-07 29.5 0.2 2 25 133 156 133 157 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 IKZF3-217 - 263 1.3e-23 82.3 19.1 3 4 2.1e-10 1.8e-07 31.3 3.9 1 23 160 182 160 183 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 IKZF3-217 - 263 1.3e-23 82.3 19.1 4 4 3.7e-10 3.2e-07 30.5 0.9 1 26 188 213 188 213 0.93 Zinc-finger double domain zf-C2H2 PF00096.26 23 IKZF3-217 - 263 7.2e-16 57.7 25.9 1 4 0.0023 2 9.0 1.1 3 23 120 140 118 140 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 IKZF3-217 - 263 7.2e-16 57.7 25.9 2 4 5.1e-09 4.4e-06 26.9 0.4 1 23 146 168 146 168 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 IKZF3-217 - 263 7.2e-16 57.7 25.9 3 4 2e-05 0.017 15.5 4.2 1 23 174 196 174 196 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 IKZF3-217 - 263 7.2e-16 57.7 25.9 4 4 6.1e-07 0.00052 20.3 0.7 1 20 202 221 202 223 0.94 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 IKZF3-217 - 263 2.4e-10 40.4 28.3 1 4 0.012 11 7.2 1.2 3 23 120 140 119 141 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 IKZF3-217 - 263 2.4e-10 40.4 28.3 2 4 1.3e-07 0.00011 22.7 0.3 1 23 146 168 146 169 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 IKZF3-217 - 263 2.4e-10 40.4 28.3 3 4 0.00046 0.39 11.7 3.2 1 23 174 196 174 197 0.85 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 IKZF3-217 - 263 2.4e-10 40.4 28.3 4 4 7.5e-05 0.064 14.1 2.3 1 22 202 223 202 225 0.93 C2H2-type zinc finger # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/IKZF3-217.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/IKZF3-217.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/IKZF3-217.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/IKZF3-217.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/IKZF3-217.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:55:06 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 IKZF4-201 - 585 6.1e-19 67.5 34.7 1 6 1.1 1.3e+03 0.1 0.2 14 21 158 165 147 168 0.83 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 IKZF4-201 - 585 6.1e-19 67.5 34.7 2 6 6.4e-09 7.7e-06 26.1 0.7 2 25 174 197 174 198 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 IKZF4-201 - 585 6.1e-19 67.5 34.7 3 6 5.2e-11 6.2e-08 32.7 2.8 1 24 201 224 201 226 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 IKZF4-201 - 585 6.1e-19 67.5 34.7 4 6 1.3e-06 0.0016 18.8 0.3 1 26 229 259 229 259 0.80 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 IKZF4-201 - 585 6.1e-19 67.5 34.7 5 6 0.34 4e+02 1.7 0.1 12 21 527 536 523 540 0.83 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 IKZF4-201 - 585 6.1e-19 67.5 34.7 6 6 0.0047 5.6 7.6 1.7 5 22 548 565 544 567 0.90 Zinc-finger double domain zf-C2H2 PF00096.26 23 IKZF4-201 - 585 9.9e-17 60.4 43.4 1 6 0.00046 0.55 10.8 0.3 2 23 160 181 159 181 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 IKZF4-201 - 585 9.9e-17 60.4 43.4 2 6 7e-08 8.4e-05 22.8 1.3 1 23 187 209 187 209 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 IKZF4-201 - 585 9.9e-17 60.4 43.4 3 6 4.2e-06 0.0051 17.2 2.7 1 23 215 237 215 237 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 IKZF4-201 - 585 9.9e-17 60.4 43.4 4 6 1.2e-07 0.00014 22.1 3.9 1 23 248 271 248 271 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 IKZF4-201 - 585 9.9e-17 60.4 43.4 5 6 0.17 2.1e+02 2.7 0.9 1 20 530 549 530 550 0.89 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 IKZF4-201 - 585 9.9e-17 60.4 43.4 6 6 0.00072 0.86 10.2 0.6 1 22 558 579 558 582 0.90 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 IKZF4-201 - 585 1.1e-11 44.6 41.2 1 6 0.0068 8.2 7.6 0.3 2 23 160 181 159 182 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 IKZF4-201 - 585 1.1e-11 44.6 41.2 2 6 7.8e-07 0.00093 19.8 1.1 1 23 187 209 187 210 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 IKZF4-201 - 585 1.1e-11 44.6 41.2 3 6 4.2e-05 0.05 14.5 1.9 1 23 215 237 215 238 0.91 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 IKZF4-201 - 585 1.1e-11 44.6 41.2 4 6 5.1e-05 0.061 14.2 3.4 1 24 248 271 248 271 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 IKZF4-201 - 585 1.1e-11 44.6 41.2 5 6 0.016 19 6.4 0.8 1 20 530 549 530 550 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 IKZF4-201 - 585 1.1e-11 44.6 41.2 6 6 0.011 13 7.0 0.5 1 20 558 577 558 579 0.80 C2H2-type zinc finger # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/IKZF4-201.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/IKZF4-201.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/IKZF4-201.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/IKZF4-201.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/IKZF4-201.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:55:07 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 IKZF4-202 - 585 6.1e-19 67.5 34.7 1 6 1.1 1.3e+03 0.1 0.2 14 21 158 165 147 168 0.83 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 IKZF4-202 - 585 6.1e-19 67.5 34.7 2 6 6.4e-09 7.7e-06 26.1 0.7 2 25 174 197 174 198 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 IKZF4-202 - 585 6.1e-19 67.5 34.7 3 6 5.2e-11 6.2e-08 32.7 2.8 1 24 201 224 201 226 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 IKZF4-202 - 585 6.1e-19 67.5 34.7 4 6 1.3e-06 0.0016 18.8 0.3 1 26 229 259 229 259 0.80 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 IKZF4-202 - 585 6.1e-19 67.5 34.7 5 6 0.34 4e+02 1.7 0.1 12 21 527 536 523 540 0.83 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 IKZF4-202 - 585 6.1e-19 67.5 34.7 6 6 0.0047 5.6 7.6 1.7 5 22 548 565 544 567 0.90 Zinc-finger double domain zf-C2H2 PF00096.26 23 IKZF4-202 - 585 9.9e-17 60.4 43.4 1 6 0.00046 0.55 10.8 0.3 2 23 160 181 159 181 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 IKZF4-202 - 585 9.9e-17 60.4 43.4 2 6 7e-08 8.4e-05 22.8 1.3 1 23 187 209 187 209 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 IKZF4-202 - 585 9.9e-17 60.4 43.4 3 6 4.2e-06 0.0051 17.2 2.7 1 23 215 237 215 237 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 IKZF4-202 - 585 9.9e-17 60.4 43.4 4 6 1.2e-07 0.00014 22.1 3.9 1 23 248 271 248 271 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 IKZF4-202 - 585 9.9e-17 60.4 43.4 5 6 0.17 2.1e+02 2.7 0.9 1 20 530 549 530 550 0.89 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 IKZF4-202 - 585 9.9e-17 60.4 43.4 6 6 0.00072 0.86 10.2 0.6 1 22 558 579 558 582 0.90 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 IKZF4-202 - 585 1.1e-11 44.6 41.2 1 6 0.0068 8.2 7.6 0.3 2 23 160 181 159 182 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 IKZF4-202 - 585 1.1e-11 44.6 41.2 2 6 7.8e-07 0.00093 19.8 1.1 1 23 187 209 187 210 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 IKZF4-202 - 585 1.1e-11 44.6 41.2 3 6 4.2e-05 0.05 14.5 1.9 1 23 215 237 215 238 0.91 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 IKZF4-202 - 585 1.1e-11 44.6 41.2 4 6 5.1e-05 0.061 14.2 3.4 1 24 248 271 248 271 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 IKZF4-202 - 585 1.1e-11 44.6 41.2 5 6 0.016 19 6.4 0.8 1 20 530 549 530 550 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 IKZF4-202 - 585 1.1e-11 44.6 41.2 6 6 0.011 13 7.0 0.5 1 20 558 577 558 579 0.80 C2H2-type zinc finger # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/IKZF4-202.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/IKZF4-202.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/IKZF4-202.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/IKZF4-202.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/IKZF4-202.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:55:07 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 IKZF4-203 - 585 6.1e-19 67.5 34.7 1 6 1.1 1.3e+03 0.1 0.2 14 21 158 165 147 168 0.83 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 IKZF4-203 - 585 6.1e-19 67.5 34.7 2 6 6.4e-09 7.7e-06 26.1 0.7 2 25 174 197 174 198 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 IKZF4-203 - 585 6.1e-19 67.5 34.7 3 6 5.2e-11 6.2e-08 32.7 2.8 1 24 201 224 201 226 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 IKZF4-203 - 585 6.1e-19 67.5 34.7 4 6 1.3e-06 0.0016 18.8 0.3 1 26 229 259 229 259 0.80 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 IKZF4-203 - 585 6.1e-19 67.5 34.7 5 6 0.34 4e+02 1.7 0.1 12 21 527 536 523 540 0.83 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 IKZF4-203 - 585 6.1e-19 67.5 34.7 6 6 0.0047 5.6 7.6 1.7 5 22 548 565 544 567 0.90 Zinc-finger double domain zf-C2H2 PF00096.26 23 IKZF4-203 - 585 9.9e-17 60.4 43.4 1 6 0.00046 0.55 10.8 0.3 2 23 160 181 159 181 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 IKZF4-203 - 585 9.9e-17 60.4 43.4 2 6 7e-08 8.4e-05 22.8 1.3 1 23 187 209 187 209 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 IKZF4-203 - 585 9.9e-17 60.4 43.4 3 6 4.2e-06 0.0051 17.2 2.7 1 23 215 237 215 237 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 IKZF4-203 - 585 9.9e-17 60.4 43.4 4 6 1.2e-07 0.00014 22.1 3.9 1 23 248 271 248 271 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 IKZF4-203 - 585 9.9e-17 60.4 43.4 5 6 0.17 2.1e+02 2.7 0.9 1 20 530 549 530 550 0.89 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 IKZF4-203 - 585 9.9e-17 60.4 43.4 6 6 0.00072 0.86 10.2 0.6 1 22 558 579 558 582 0.90 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 IKZF4-203 - 585 1.1e-11 44.6 41.2 1 6 0.0068 8.2 7.6 0.3 2 23 160 181 159 182 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 IKZF4-203 - 585 1.1e-11 44.6 41.2 2 6 7.8e-07 0.00093 19.8 1.1 1 23 187 209 187 210 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 IKZF4-203 - 585 1.1e-11 44.6 41.2 3 6 4.2e-05 0.05 14.5 1.9 1 23 215 237 215 238 0.91 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 IKZF4-203 - 585 1.1e-11 44.6 41.2 4 6 5.1e-05 0.061 14.2 3.4 1 24 248 271 248 271 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 IKZF4-203 - 585 1.1e-11 44.6 41.2 5 6 0.016 19 6.4 0.8 1 20 530 549 530 550 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 IKZF4-203 - 585 1.1e-11 44.6 41.2 6 6 0.011 13 7.0 0.5 1 20 558 577 558 579 0.80 C2H2-type zinc finger # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/IKZF4-203.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/IKZF4-203.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/IKZF4-203.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/IKZF4-203.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/IKZF4-203.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:55:08 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/IKZF4-204.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/IKZF4-204.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/IKZF4-204.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/IKZF4-204.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/IKZF4-204.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:55:08 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/IKZF4-205.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/IKZF4-205.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/IKZF4-205.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/IKZF4-205.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/IKZF4-205.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:55:08 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 IKZF4-206 - 540 3.8e-19 68.2 34.7 1 6 0.93 1.2e+03 0.2 0.2 14 21 113 120 102 123 0.83 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 IKZF4-206 - 540 3.8e-19 68.2 34.7 2 6 5.5e-09 7e-06 26.2 0.7 2 25 129 152 129 153 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 IKZF4-206 - 540 3.8e-19 68.2 34.7 3 6 4.4e-11 5.6e-08 32.9 2.8 1 24 156 179 156 181 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 IKZF4-206 - 540 3.8e-19 68.2 34.7 4 6 1.1e-06 0.0014 18.9 0.3 1 26 184 214 184 214 0.80 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 IKZF4-206 - 540 3.8e-19 68.2 34.7 5 6 0.29 3.7e+02 1.8 0.1 12 21 482 491 478 495 0.83 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 IKZF4-206 - 540 3.8e-19 68.2 34.7 6 6 0.004 5.1 7.7 1.7 5 22 503 520 499 522 0.90 Zinc-finger double domain zf-C2H2 PF00096.26 23 IKZF4-206 - 540 5.7e-17 61.1 43.4 1 6 0.00039 0.5 10.9 0.3 2 23 115 136 114 136 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 IKZF4-206 - 540 5.7e-17 61.1 43.4 2 6 5.9e-08 7.6e-05 23.0 1.3 1 23 142 164 142 164 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 IKZF4-206 - 540 5.7e-17 61.1 43.4 3 6 3.6e-06 0.0046 17.3 2.7 1 23 170 192 170 192 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 IKZF4-206 - 540 5.7e-17 61.1 43.4 4 6 1e-07 0.00013 22.2 3.9 1 23 203 226 203 226 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 IKZF4-206 - 540 5.7e-17 61.1 43.4 5 6 0.15 1.9e+02 2.8 0.9 1 20 485 504 485 505 0.89 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 IKZF4-206 - 540 5.7e-17 61.1 43.4 6 6 0.00061 0.78 10.3 0.6 1 22 513 534 513 537 0.90 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 IKZF4-206 - 540 6.3e-12 45.3 41.2 1 6 0.0058 7.4 7.7 0.3 2 23 115 136 114 137 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 IKZF4-206 - 540 6.3e-12 45.3 41.2 2 6 6.6e-07 0.00084 20.0 1.1 1 23 142 164 142 165 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 IKZF4-206 - 540 6.3e-12 45.3 41.2 3 6 3.5e-05 0.045 14.6 1.9 1 23 170 192 170 193 0.91 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 IKZF4-206 - 540 6.3e-12 45.3 41.2 4 6 4.4e-05 0.056 14.3 3.4 1 24 203 226 203 226 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 IKZF4-206 - 540 6.3e-12 45.3 41.2 5 6 0.014 18 6.5 0.8 1 20 485 504 485 505 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 IKZF4-206 - 540 6.3e-12 45.3 41.2 6 6 0.0092 12 7.1 0.5 1 20 513 532 513 534 0.80 C2H2-type zinc finger # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/IKZF4-206.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/IKZF4-206.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/IKZF4-206.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/IKZF4-206.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/IKZF4-206.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:55:09 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/IKZF4-207.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/IKZF4-207.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/IKZF4-207.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/IKZF4-207.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/IKZF4-207.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:55:09 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/IKZF4-208.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/IKZF4-208.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/IKZF4-208.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/IKZF4-208.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/IKZF4-208.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:55:09 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/IKZF4-209.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/IKZF4-209.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/IKZF4-209.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/IKZF4-209.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/IKZF4-209.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:55:10 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 IKZF4-210 - 483 2.3e-19 68.9 35.1 1 6 0.77 1.1e+03 0.4 0.2 14 21 56 63 44 66 0.83 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 IKZF4-210 - 483 2.3e-19 68.9 35.1 2 6 4.4e-09 6.1e-06 26.4 0.7 2 25 72 95 72 96 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 IKZF4-210 - 483 2.3e-19 68.9 35.1 3 6 3.6e-11 4.9e-08 33.0 2.8 1 24 99 122 99 124 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 IKZF4-210 - 483 2.3e-19 68.9 35.1 4 6 9.1e-07 0.0013 19.1 0.3 1 26 127 157 127 157 0.80 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 IKZF4-210 - 483 2.3e-19 68.9 35.1 5 6 0.24 3.3e+02 2.0 0.1 12 21 425 434 421 438 0.83 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 IKZF4-210 - 483 2.3e-19 68.9 35.1 6 6 0.0033 4.5 7.9 1.7 5 22 446 463 442 465 0.90 Zinc-finger double domain zf-C2H2 PF00096.26 23 IKZF4-210 - 483 2.6e-17 62.2 43.4 1 6 0.00032 0.44 11.1 0.3 2 23 58 79 57 79 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 IKZF4-210 - 483 2.6e-17 62.2 43.4 2 6 4.8e-08 6.7e-05 23.1 1.3 1 23 85 107 85 107 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 IKZF4-210 - 483 2.6e-17 62.2 43.4 3 6 2.9e-06 0.004 17.5 2.7 1 23 113 135 113 135 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 IKZF4-210 - 483 2.6e-17 62.2 43.4 4 6 8.3e-08 0.00011 22.4 3.9 1 23 146 169 146 169 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 IKZF4-210 - 483 2.6e-17 62.2 43.4 5 6 0.12 1.6e+02 3.0 0.9 1 20 428 447 428 448 0.89 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 IKZF4-210 - 483 2.6e-17 62.2 43.4 6 6 0.00049 0.68 10.5 0.6 1 22 456 477 456 480 0.90 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 IKZF4-210 - 483 2.8e-12 46.3 41.2 1 6 0.0047 6.5 7.9 0.3 2 23 58 79 57 80 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 IKZF4-210 - 483 2.8e-12 46.3 41.2 2 6 5.3e-07 0.00074 20.2 1.1 1 23 85 107 85 108 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 IKZF4-210 - 483 2.8e-12 46.3 41.2 3 6 2.9e-05 0.04 14.8 1.9 1 23 113 135 113 136 0.91 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 IKZF4-210 - 483 2.8e-12 46.3 41.2 4 6 3.5e-05 0.049 14.5 3.4 1 24 146 169 146 169 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 IKZF4-210 - 483 2.8e-12 46.3 41.2 5 6 0.011 15 6.7 0.8 1 20 428 447 428 448 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 IKZF4-210 - 483 2.8e-12 46.3 41.2 6 6 0.0074 10 7.3 0.5 1 20 456 475 456 477 0.80 C2H2-type zinc finger # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/IKZF4-210.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/IKZF4-210.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/IKZF4-210.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/IKZF4-210.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/IKZF4-210.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:55:10 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 IKZF4-211 - 544 4e-19 68.1 34.7 1 6 0.94 1.2e+03 0.2 0.2 14 21 117 124 106 127 0.83 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 IKZF4-211 - 544 4e-19 68.1 34.7 2 6 5.5e-09 7.1e-06 26.2 0.7 2 25 133 156 133 157 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 IKZF4-211 - 544 4e-19 68.1 34.7 3 6 4.4e-11 5.7e-08 32.8 2.8 1 24 160 183 160 185 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 IKZF4-211 - 544 4e-19 68.1 34.7 4 6 1.1e-06 0.0015 18.9 0.3 1 26 188 218 188 218 0.80 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 IKZF4-211 - 544 4e-19 68.1 34.7 5 6 0.29 3.7e+02 1.8 0.1 12 21 486 495 482 499 0.83 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 IKZF4-211 - 544 4e-19 68.1 34.7 6 6 0.004 5.2 7.7 1.7 5 22 507 524 503 526 0.90 Zinc-finger double domain zf-C2H2 PF00096.26 23 IKZF4-211 - 544 6e-17 61.1 43.4 1 6 0.00039 0.5 10.9 0.3 2 23 119 140 118 140 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 IKZF4-211 - 544 6e-17 61.1 43.4 2 6 6e-08 7.7e-05 22.9 1.3 1 23 146 168 146 168 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 IKZF4-211 - 544 6e-17 61.1 43.4 3 6 3.6e-06 0.0046 17.3 2.7 1 23 174 196 174 196 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 IKZF4-211 - 544 6e-17 61.1 43.4 4 6 1e-07 0.00013 22.2 3.9 1 23 207 230 207 230 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 IKZF4-211 - 544 6e-17 61.1 43.4 5 6 0.15 1.9e+02 2.8 0.9 1 20 489 508 489 509 0.89 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 IKZF4-211 - 544 6e-17 61.1 43.4 6 6 0.00061 0.79 10.3 0.6 1 22 517 538 517 541 0.90 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 IKZF4-211 - 544 6.4e-12 45.2 41.2 1 6 0.0058 7.5 7.7 0.3 2 23 119 140 118 141 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 IKZF4-211 - 544 6.4e-12 45.2 41.2 2 6 6.7e-07 0.00085 20.0 1.1 1 23 146 168 146 169 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 IKZF4-211 - 544 6.4e-12 45.2 41.2 3 6 3.6e-05 0.046 14.6 1.9 1 23 174 196 174 197 0.91 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 IKZF4-211 - 544 6.4e-12 45.2 41.2 4 6 4.4e-05 0.056 14.3 3.4 1 24 207 230 207 230 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 IKZF4-211 - 544 6.4e-12 45.2 41.2 5 6 0.014 18 6.5 0.8 1 20 489 508 489 509 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 IKZF4-211 - 544 6.4e-12 45.2 41.2 6 6 0.0092 12 7.1 0.5 1 20 517 536 517 538 0.80 C2H2-type zinc finger # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/IKZF4-211.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/IKZF4-211.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/IKZF4-211.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/IKZF4-211.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/IKZF4-211.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:55:10 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/IKZF4-212.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/IKZF4-212.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/IKZF4-212.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/IKZF4-212.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/IKZF4-212.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:55:11 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/IKZF4-213.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/IKZF4-213.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/IKZF4-213.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/IKZF4-213.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/IKZF4-213.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:55:11 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 IKZF5-201 - 419 1.4e-11 44.3 45.1 1 6 0.018 66 4.2 0.4 14 25 81 92 75 92 0.82 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 IKZF5-201 - 419 1.4e-11 44.3 45.1 2 6 1.5e-09 5.5e-06 26.6 1.3 2 24 97 119 96 121 0.88 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 IKZF5-201 - 419 1.4e-11 44.3 45.1 3 6 8.5e-11 3e-07 30.5 4.0 1 22 124 145 124 148 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 IKZF5-201 - 419 1.4e-11 44.3 45.1 4 6 0.79 2.8e+03 -1.0 1.5 1 10 152 162 152 166 0.79 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 IKZF5-201 - 419 1.4e-11 44.3 45.1 5 6 0.031 1.1e+02 3.5 0.0 15 25 364 374 356 375 0.77 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 IKZF5-201 - 419 1.4e-11 44.3 45.1 6 6 0.044 1.6e+02 3.0 6.2 5 21 382 398 379 405 0.87 Zinc-finger double domain zf-H2C2_5 PF13909.6 26 IKZF5-201 - 419 2.2e-11 43.3 31.9 1 4 6.2e-09 2.2e-05 24.1 0.1 2 26 83 106 82 106 0.97 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 IKZF5-201 - 419 2.2e-11 43.3 31.9 2 4 1.9e-06 0.0067 16.2 1.6 1 26 110 134 110 134 0.96 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 IKZF5-201 - 419 2.2e-11 43.3 31.9 3 4 2.4e-06 0.0087 15.8 9.4 1 25 138 162 138 163 0.98 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 IKZF5-201 - 419 2.2e-11 43.3 31.9 4 4 0.19 6.8e+02 0.1 2.4 3 7 366 370 364 371 0.89 C2H2-type zinc-finger domain zf-C2H2 PF00096.26 23 IKZF5-201 - 419 8e-07 29.2 49.3 1 5 0.00016 0.59 10.7 0.2 2 23 83 104 82 104 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 IKZF5-201 - 419 8e-07 29.2 49.3 2 5 2.5e-05 0.088 13.3 4.4 1 23 110 132 110 132 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 IKZF5-201 - 419 8e-07 29.2 49.3 3 5 1.9e-05 0.067 13.7 7.9 1 23 138 161 138 161 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 IKZF5-201 - 419 8e-07 29.2 49.3 4 5 0.00066 2.4 8.8 1.5 1 20 364 383 364 384 0.95 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 IKZF5-201 - 419 8e-07 29.2 49.3 5 5 0.018 65 4.3 6.9 1 17 392 408 392 416 0.86 Zinc finger, C2H2 type # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/IKZF5-201.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/IKZF5-201.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/IKZF5-201.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/IKZF5-201.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/IKZF5-201.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:55:12 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/IKZF5-202.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/IKZF5-202.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/IKZF5-202.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/IKZF5-202.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/IKZF5-202.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:55:12 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/IKZF5-203.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/IKZF5-203.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/IKZF5-203.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/IKZF5-203.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/IKZF5-203.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:55:12 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/IKZF5-204.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/IKZF5-204.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/IKZF5-204.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/IKZF5-204.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/IKZF5-204.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:55:13 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 IKZF5-205 - 419 1.4e-11 44.3 45.1 1 6 0.018 66 4.2 0.4 14 25 81 92 75 92 0.82 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 IKZF5-205 - 419 1.4e-11 44.3 45.1 2 6 1.5e-09 5.5e-06 26.6 1.3 2 24 97 119 96 121 0.88 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 IKZF5-205 - 419 1.4e-11 44.3 45.1 3 6 8.5e-11 3e-07 30.5 4.0 1 22 124 145 124 148 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 IKZF5-205 - 419 1.4e-11 44.3 45.1 4 6 0.79 2.8e+03 -1.0 1.5 1 10 152 162 152 166 0.79 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 IKZF5-205 - 419 1.4e-11 44.3 45.1 5 6 0.031 1.1e+02 3.5 0.0 15 25 364 374 356 375 0.77 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 IKZF5-205 - 419 1.4e-11 44.3 45.1 6 6 0.044 1.6e+02 3.0 6.2 5 21 382 398 379 405 0.87 Zinc-finger double domain zf-H2C2_5 PF13909.6 26 IKZF5-205 - 419 2.2e-11 43.3 31.9 1 4 6.2e-09 2.2e-05 24.1 0.1 2 26 83 106 82 106 0.97 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 IKZF5-205 - 419 2.2e-11 43.3 31.9 2 4 1.9e-06 0.0067 16.2 1.6 1 26 110 134 110 134 0.96 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 IKZF5-205 - 419 2.2e-11 43.3 31.9 3 4 2.4e-06 0.0087 15.8 9.4 1 25 138 162 138 163 0.98 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 IKZF5-205 - 419 2.2e-11 43.3 31.9 4 4 0.19 6.8e+02 0.1 2.4 3 7 366 370 364 371 0.89 C2H2-type zinc-finger domain zf-C2H2 PF00096.26 23 IKZF5-205 - 419 8e-07 29.2 49.3 1 5 0.00016 0.59 10.7 0.2 2 23 83 104 82 104 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 IKZF5-205 - 419 8e-07 29.2 49.3 2 5 2.5e-05 0.088 13.3 4.4 1 23 110 132 110 132 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 IKZF5-205 - 419 8e-07 29.2 49.3 3 5 1.9e-05 0.067 13.7 7.9 1 23 138 161 138 161 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 IKZF5-205 - 419 8e-07 29.2 49.3 4 5 0.00066 2.4 8.8 1.5 1 20 364 383 364 384 0.95 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 IKZF5-205 - 419 8e-07 29.2 49.3 5 5 0.018 65 4.3 6.9 1 17 392 408 392 416 0.86 Zinc finger, C2H2 type # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/IKZF5-205.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/IKZF5-205.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/IKZF5-205.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/IKZF5-205.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/IKZF5-205.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:55:13 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-C2H2 PF00096.26 23 INSM2-201 - 566 3.6e-14 52.3 36.8 1 5 0.0099 8.5 7.1 0.3 1 21 263 283 263 284 0.93 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 INSM2-201 - 566 3.6e-14 52.3 36.8 2 5 3.4e-07 0.00029 21.1 0.9 1 23 291 313 291 313 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 INSM2-201 - 566 3.6e-14 52.3 36.8 3 5 2.3e-08 2e-05 24.8 4.9 1 23 426 448 426 448 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 INSM2-201 - 566 3.6e-14 52.3 36.8 4 5 0.013 11 6.7 0.2 1 23 470 492 470 492 0.86 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 INSM2-201 - 566 3.6e-14 52.3 36.8 5 5 0.00041 0.35 11.4 5.3 1 23 525 548 525 548 0.97 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 INSM2-201 - 566 1.9e-13 50.0 33.8 1 5 0.0042 3.6 8.7 0.1 1 19 263 281 263 282 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 INSM2-201 - 566 1.9e-13 50.0 33.8 2 5 2.7e-06 0.0023 18.6 1.6 1 23 291 313 291 314 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 INSM2-201 - 566 1.9e-13 50.0 33.8 3 5 4.2e-06 0.0036 18.0 3.5 1 23 426 448 426 449 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 INSM2-201 - 566 1.9e-13 50.0 33.8 4 5 0.0028 2.4 9.3 0.2 1 23 470 492 470 493 0.84 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 INSM2-201 - 566 1.9e-13 50.0 33.8 5 5 0.00026 0.22 12.4 5.0 1 24 525 548 525 548 0.96 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 INSM2-201 - 566 4.1e-07 29.8 22.3 1 5 0.12 1e+02 3.1 0.3 2 11 263 272 263 273 0.90 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 INSM2-201 - 566 4.1e-07 29.8 22.3 2 5 9.4e-05 0.08 13.0 0.3 2 25 291 314 290 316 0.88 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 INSM2-201 - 566 4.1e-07 29.8 22.3 3 5 3.1e-07 0.00026 20.9 1.5 2 26 426 450 425 451 0.95 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 INSM2-201 - 566 4.1e-07 29.8 22.3 4 5 0.017 14 5.8 0.0 1 13 469 481 469 483 0.90 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 INSM2-201 - 566 4.1e-07 29.8 22.3 5 5 3.6 3.1e+03 -1.7 1.4 2 26 525 550 524 551 0.77 C2H2-type zinc finger zf-C2H2_jaz PF12171.8 27 INSM2-201 - 566 1e-06 28.8 19.3 1 5 0.006 5.1 7.5 0.7 2 20 263 281 262 285 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 INSM2-201 - 566 1e-06 28.8 19.3 2 5 0.0039 3.3 8.1 0.2 2 20 291 309 290 311 0.77 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 INSM2-201 - 566 1e-06 28.8 19.3 3 5 3.1e-05 0.027 14.8 1.2 2 24 426 448 425 449 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 INSM2-201 - 566 1e-06 28.8 19.3 4 5 0.055 47 4.4 0.0 2 20 470 488 469 489 0.82 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 INSM2-201 - 566 1e-06 28.8 19.3 5 5 0.057 48 4.4 0.1 2 22 525 545 524 546 0.82 Zinc-finger double-stranded RNA-binding # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/INSM2-201.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/INSM2-201.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/INSM2-201.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/INSM2-201.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/INSM2-201.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:55:13 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-C2H2 PF00096.26 23 KLF10-201 - 480 2.8e-11 43.2 28.7 1 4 1.5 3.5e+03 -1.2 0.1 9 17 184 192 182 193 0.85 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 KLF10-201 - 480 2.8e-11 43.2 28.7 2 4 1.5e-05 0.034 14.6 5.9 2 23 370 393 367 393 0.93 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 KLF10-201 - 480 2.8e-11 43.2 28.7 3 4 4.3e-07 0.00096 19.5 1.1 1 23 399 423 399 423 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 KLF10-201 - 480 2.8e-11 43.2 28.7 4 4 5.9e-08 0.00013 22.2 3.1 1 23 429 451 429 451 0.97 Zinc finger, C2H2 type zf-H2C2_2 PF13465.6 26 KLF10-201 - 480 3.7e-10 39.8 10.2 1 4 8 1.8e+04 -3.6 0.3 19 24 375 380 368 381 0.72 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 KLF10-201 - 480 3.7e-10 39.8 10.2 2 4 2.8e-08 6.3e-05 23.2 1.8 1 25 385 411 385 412 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 KLF10-201 - 480 3.7e-10 39.8 10.2 3 4 3e-10 6.7e-07 29.5 1.5 2 24 416 438 415 438 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 KLF10-201 - 480 3.7e-10 39.8 10.2 4 4 0.4 9e+02 0.6 1.1 1 13 443 455 443 458 0.81 Zinc-finger double domain zf-C2H2_4 PF13894.6 24 KLF10-201 - 480 1.4e-07 31.8 21.3 1 3 0.0016 3.6 8.7 4.2 1 23 369 393 369 394 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 KLF10-201 - 480 1.4e-07 31.8 21.3 2 3 1.7e-05 0.038 14.8 1.0 1 23 399 423 399 424 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 KLF10-201 - 480 1.4e-07 31.8 21.3 3 3 1.2e-06 0.0028 18.4 1.7 1 23 429 451 429 452 0.96 C2H2-type zinc finger # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/KLF10-201.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/KLF10-201.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/KLF10-201.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/KLF10-201.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/KLF10-201.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:55:14 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-C2H2 PF00096.26 23 KLF10-202 - 469 2.5e-11 43.4 28.7 1 4 1.5 3.4e+03 -1.1 0.1 9 17 173 181 171 182 0.85 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 KLF10-202 - 469 2.5e-11 43.4 28.7 2 4 1.5e-05 0.033 14.6 5.9 2 23 359 382 356 382 0.93 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 KLF10-202 - 469 2.5e-11 43.4 28.7 3 4 4.2e-07 0.00094 19.5 1.1 1 23 388 412 388 412 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 KLF10-202 - 469 2.5e-11 43.4 28.7 4 4 5.7e-08 0.00013 22.2 3.1 1 23 418 440 418 440 0.97 Zinc finger, C2H2 type zf-H2C2_2 PF13465.6 26 KLF10-202 - 469 3.4e-10 39.9 10.2 1 4 8 1.8e+04 -3.6 0.3 19 24 364 369 357 370 0.72 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 KLF10-202 - 469 3.4e-10 39.9 10.2 2 4 2.7e-08 6.1e-05 23.3 1.8 1 25 374 400 374 401 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 KLF10-202 - 469 3.4e-10 39.9 10.2 3 4 2.9e-10 6.5e-07 29.5 1.5 2 24 405 427 404 427 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 KLF10-202 - 469 3.4e-10 39.9 10.2 4 4 0.39 8.8e+02 0.6 1.1 1 13 432 444 432 447 0.81 Zinc-finger double domain zf-C2H2_4 PF13894.6 24 KLF10-202 - 469 1.2e-07 31.9 21.3 1 3 0.0016 3.5 8.7 4.2 1 23 358 382 358 383 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 KLF10-202 - 469 1.2e-07 31.9 21.3 2 3 1.7e-05 0.037 14.9 1.0 1 23 388 412 388 413 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 KLF10-202 - 469 1.2e-07 31.9 21.3 3 3 1.2e-06 0.0027 18.4 1.7 1 23 418 440 418 441 0.96 C2H2-type zinc finger # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/KLF10-202.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/KLF10-202.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/KLF10-202.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/KLF10-202.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/KLF10-202.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:55:14 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- EKLF_TAD1 PF16832.5 27 KLF1-201 - 362 1.1e-17 63.6 7.2 1 1 3.1e-20 6.2e-17 61.2 7.2 1 26 22 47 22 48 0.98 Erythroid krueppel-like transcription factor, transactivation 1 zf-C2H2 PF00096.26 23 KLF1-201 - 362 2.8e-16 59.0 20.2 1 3 1.7e-07 0.00035 20.9 5.0 1 23 279 303 279 303 0.95 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 KLF1-201 - 362 2.8e-16 59.0 20.2 2 3 5.2e-08 0.0001 22.5 0.2 1 23 309 333 309 333 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 KLF1-201 - 362 2.8e-16 59.0 20.2 3 3 1e-08 2.1e-05 24.7 2.4 1 23 339 361 339 361 0.99 Zinc finger, C2H2 type EKLF_TAD2 PF16833.5 27 KLF1-201 - 362 3.3e-15 55.8 5.3 1 1 3.2e-18 6.3e-15 54.9 5.3 1 27 59 85 59 85 0.99 Erythroid krueppel-like transcription factor, transactivation 2 zf-H2C2_2 PF13465.6 26 KLF1-201 - 362 1e-11 44.7 7.1 1 4 1.4 2.7e+03 -0.9 0.2 16 25 280 291 274 292 0.72 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 KLF1-201 - 362 1e-11 44.7 7.1 2 4 3.5e-08 7e-05 23.1 0.4 1 18 295 312 295 322 0.86 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 KLF1-201 - 362 1e-11 44.7 7.1 3 4 3.9e-11 7.7e-08 32.4 1.5 2 25 326 349 325 350 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 KLF1-201 - 362 1e-11 44.7 7.1 4 4 5 9.9e+03 -2.7 2.5 1 9 353 361 353 362 0.78 Zinc-finger double domain zf-C2H2_4 PF13894.6 24 KLF1-201 - 362 8.2e-09 35.6 18.5 1 3 0.00019 0.38 11.7 3.7 2 23 280 303 279 304 0.87 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 KLF1-201 - 362 8.2e-09 35.6 18.5 2 3 2e-05 0.04 14.8 0.3 1 23 309 333 309 334 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 KLF1-201 - 362 8.2e-09 35.6 18.5 3 3 1.5e-06 0.003 18.2 1.8 1 23 339 361 339 362 0.96 C2H2-type zinc finger # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/KLF1-201.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/KLF1-201.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/KLF1-201.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/KLF1-201.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/KLF1-201.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:55:14 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-C2H2 PF00096.26 23 KLF12-201 - 402 5.3e-16 58.1 23.1 1 3 4.5e-07 0.00091 19.6 4.9 1 23 317 341 317 341 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 KLF12-201 - 402 5.3e-16 58.1 23.1 2 3 4.5e-08 9e-05 22.7 0.8 1 23 347 371 347 371 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 KLF12-201 - 402 5.3e-16 58.1 23.1 3 3 3.1e-09 6.1e-06 26.4 2.9 1 23 377 399 377 399 0.99 Zinc finger, C2H2 type zf-H2C2_2 PF13465.6 26 KLF12-201 - 402 8.4e-11 41.8 9.5 1 4 0.24 4.8e+02 1.5 0.2 13 25 315 329 307 330 0.78 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 KLF12-201 - 402 8.4e-11 41.8 9.5 2 4 4.5e-08 9.1e-05 22.7 1.4 1 18 333 350 333 360 0.87 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 KLF12-201 - 402 8.4e-11 41.8 9.5 3 4 7.6e-11 1.5e-07 31.5 1.4 2 25 364 387 363 388 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 KLF12-201 - 402 8.4e-11 41.8 9.5 4 4 9 1.8e+04 -4.9 3.2 2 9 392 399 391 400 0.62 Zinc-finger double domain # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/KLF12-201.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/KLF12-201.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/KLF12-201.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/KLF12-201.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/KLF12-201.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:55:15 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/KLF12-202.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/KLF12-202.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/KLF12-202.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/KLF12-202.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/KLF12-202.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:55:15 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-C2H2 PF00096.26 23 KLF13-201 - 288 4e-15 55.3 22.6 1 3 1.4e-06 0.0023 18.3 4.9 1 23 167 191 167 191 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 KLF13-201 - 288 4e-15 55.3 22.6 2 3 2.3e-08 3.7e-05 23.9 0.5 1 23 197 221 197 221 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 KLF13-201 - 288 4e-15 55.3 22.6 3 3 2.9e-08 4.8e-05 23.6 3.2 1 23 227 249 227 249 0.98 Zinc finger, C2H2 type zf-H2C2_2 PF13465.6 26 KLF13-201 - 288 1.2e-12 47.6 9.5 1 4 0.56 9.2e+02 0.6 0.5 11 25 163 179 160 180 0.73 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 KLF13-201 - 288 1.2e-12 47.6 9.5 2 4 1.9e-10 3.2e-07 30.5 1.0 1 25 183 209 183 210 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 KLF13-201 - 288 1.2e-12 47.6 9.5 3 4 5.6e-10 9.1e-07 29.0 2.0 2 24 214 236 213 236 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 KLF13-201 - 288 1.2e-12 47.6 9.5 4 4 1.1 1.8e+03 -0.3 1.5 1 9 241 249 241 255 0.78 Zinc-finger double domain zf-C2H2_4 PF13894.6 24 KLF13-201 - 288 7.4e-09 35.7 19.9 1 3 0.00053 0.87 10.6 4.0 1 23 167 191 167 192 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 KLF13-201 - 288 7.4e-09 35.7 19.9 2 3 2.1e-05 0.035 14.9 0.5 1 23 197 221 197 222 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 KLF13-201 - 288 7.4e-09 35.7 19.9 3 3 4.2e-07 0.00068 20.3 1.7 1 23 227 249 227 250 0.96 C2H2-type zinc finger # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/KLF13-201.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/KLF13-201.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/KLF13-201.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/KLF13-201.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/KLF13-201.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:55:15 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/KLF13-202.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/KLF13-202.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/KLF13-202.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/KLF13-202.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/KLF13-202.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:55:16 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/KLF13-203.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/KLF13-203.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/KLF13-203.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/KLF13-203.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/KLF13-203.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:55:16 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/KLF13-204.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/KLF13-204.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/KLF13-204.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/KLF13-204.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/KLF13-204.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:55:16 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/KLF13-205.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/KLF13-205.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/KLF13-205.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/KLF13-205.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/KLF13-205.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:55:17 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-C2H2 PF00096.26 23 KLF13-207 - 100 9.4e-13 47.9 9.8 1 2 5.3e-09 7.4e-06 26.1 0.5 1 23 9 33 9 33 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 KLF13-207 - 100 9.4e-13 47.9 9.8 2 2 7.1e-09 9.8e-06 25.7 3.2 1 23 39 61 39 61 0.98 Zinc finger, C2H2 type zf-H2C2_2 PF13465.6 26 KLF13-207 - 100 1.2e-09 38.1 15.3 1 3 6e-05 0.082 13.4 0.1 10 26 4 22 2 22 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 KLF13-207 - 100 1.2e-09 38.1 15.3 2 3 1.4e-10 1.9e-07 31.2 2.0 2 24 26 48 25 48 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 KLF13-207 - 100 1.2e-09 38.1 15.3 3 3 0.33 4.5e+02 1.5 1.6 1 9 53 61 53 68 0.77 Zinc-finger double domain zf-C2H2_4 PF13894.6 24 KLF13-207 - 100 7.1e-09 35.8 8.0 1 2 4.9e-06 0.0067 17.2 0.5 1 23 9 33 9 34 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 KLF13-207 - 100 7.1e-09 35.8 8.0 2 2 9.9e-08 0.00014 22.4 1.7 1 23 39 61 39 62 0.96 C2H2-type zinc finger # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/KLF13-207.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/KLF13-207.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/KLF13-207.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/KLF13-207.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/KLF13-207.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:55:17 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-C2H2 PF00096.26 23 KLF14-201 - 323 1e-16 60.4 23.2 1 3 5.2e-07 0.00078 19.8 4.8 1 23 195 219 195 219 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 KLF14-201 - 323 1e-16 60.4 23.2 2 3 4.7e-09 7e-06 26.2 0.8 1 23 225 249 225 249 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 KLF14-201 - 323 1e-16 60.4 23.2 3 3 9e-09 1.4e-05 25.3 3.1 1 23 255 277 255 277 0.98 Zinc finger, C2H2 type zf-H2C2_2 PF13465.6 26 KLF14-201 - 323 1.1e-13 50.9 9.7 1 4 0.082 1.2e+02 3.3 0.5 13 24 193 206 185 208 0.76 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 KLF14-201 - 323 1.1e-13 50.9 9.7 2 4 4.4e-10 6.5e-07 29.5 1.4 1 26 211 238 211 238 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 KLF14-201 - 323 1.1e-13 50.9 9.7 3 4 2.3e-11 3.4e-08 33.5 1.6 2 25 242 265 241 266 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 KLF14-201 - 323 1.1e-13 50.9 9.7 4 4 1.5 2.3e+03 -0.7 2.3 1 10 269 278 269 282 0.90 Zinc-finger double domain zf-C2H2_4 PF13894.6 24 KLF14-201 - 323 1.1e-07 32.1 20.2 1 3 0.0034 5 8.2 3.6 1 23 195 219 195 220 0.91 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 KLF14-201 - 323 1.1e-07 32.1 20.2 2 3 5.1e-05 0.076 13.9 0.6 1 23 225 249 225 250 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 KLF14-201 - 323 1.1e-07 32.1 20.2 3 3 4.7e-07 0.0007 20.2 2.1 1 23 255 277 255 278 0.96 C2H2-type zinc finger # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/KLF14-201.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/KLF14-201.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/KLF14-201.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/KLF14-201.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/KLF14-201.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:55:17 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-C2H2 PF00096.26 23 KLF15-201 - 416 1.5e-15 56.7 20.3 1 3 1.9e-06 0.0031 17.9 5.7 1 23 321 345 321 345 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 KLF15-201 - 416 1.5e-15 56.7 20.3 2 3 1.5e-07 0.00024 21.4 0.3 1 23 351 375 351 375 0.95 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 KLF15-201 - 416 1.5e-15 56.7 20.3 3 3 4e-09 6.5e-06 26.3 1.5 1 23 381 403 381 403 0.99 Zinc finger, C2H2 type zf-H2C2_2 PF13465.6 26 KLF15-201 - 416 1.3e-13 50.7 19.8 1 4 1.5 2.4e+03 -0.8 0.2 13 25 319 333 312 334 0.79 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 KLF15-201 - 416 1.3e-13 50.7 19.8 2 4 1.6e-07 0.00026 21.2 0.5 1 18 337 354 337 364 0.87 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 KLF15-201 - 416 1.3e-13 50.7 19.8 3 4 2.6e-12 4.2e-09 36.4 1.0 2 25 368 391 367 392 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 KLF15-201 - 416 1.3e-13 50.7 19.8 4 4 0.03 48 4.6 0.9 1 11 395 405 395 408 0.85 Zinc-finger double domain zf-C2H2_4 PF13894.6 24 KLF15-201 - 416 3.2e-10 40.0 19.9 1 3 0.00042 0.68 10.9 4.2 1 23 321 345 321 346 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 KLF15-201 - 416 3.2e-10 40.0 19.9 2 3 4.1e-06 0.0066 17.2 0.4 1 23 351 375 351 376 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 KLF15-201 - 416 3.2e-10 40.0 19.9 3 3 2.3e-07 0.00038 21.0 1.8 1 23 381 403 381 404 0.96 C2H2-type zinc finger # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/KLF15-201.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/KLF15-201.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/KLF15-201.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/KLF15-201.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/KLF15-201.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:55:18 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/KLF15-202.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/KLF15-202.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/KLF15-202.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/KLF15-202.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/KLF15-202.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:55:18 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-C2H2 PF00096.26 23 KLF16-201 - 252 3.6e-15 55.5 22.8 1 3 2e-06 0.0023 18.3 4.3 1 23 127 151 127 151 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 KLF16-201 - 252 3.6e-15 55.5 22.8 2 3 8.6e-08 9.6e-05 22.6 0.7 1 23 157 181 157 181 0.95 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 KLF16-201 - 252 3.6e-15 55.5 22.8 3 3 1.1e-08 1.3e-05 25.4 3.3 1 23 187 209 187 209 0.98 Zinc finger, C2H2 type zf-H2C2_2 PF13465.6 26 KLF16-201 - 252 2.4e-13 49.8 10.5 1 4 0.41 4.6e+02 1.5 1.5 13 24 125 138 124 140 0.82 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 KLF16-201 - 252 2.4e-13 49.8 10.5 2 4 4.4e-10 4.9e-07 29.9 0.7 1 25 143 169 143 170 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 KLF16-201 - 252 2.4e-13 49.8 10.5 3 4 1.3e-10 1.5e-07 31.5 3.3 2 26 174 198 173 198 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 KLF16-201 - 252 2.4e-13 49.8 10.5 4 4 0.31 3.4e+02 1.9 0.9 1 11 201 211 201 216 0.87 Zinc-finger double domain zf-C2H2_4 PF13894.6 24 KLF16-201 - 252 1.4e-07 31.7 20.1 1 3 0.0044 4.9 8.3 3.2 1 23 127 151 127 152 0.88 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 KLF16-201 - 252 1.4e-07 31.7 20.1 2 3 0.00011 0.12 13.3 0.7 1 23 157 181 157 182 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 KLF16-201 - 252 1.4e-07 31.7 20.1 3 3 4.3e-07 0.00048 20.7 2.2 1 23 187 209 187 210 0.96 C2H2-type zinc finger # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/KLF16-201.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/KLF16-201.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/KLF16-201.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/KLF16-201.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/KLF16-201.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:55:18 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-C2H2 PF00096.26 23 KLF16-202 - 252 3.6e-15 55.5 22.8 1 3 2e-06 0.0023 18.3 4.3 1 23 127 151 127 151 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 KLF16-202 - 252 3.6e-15 55.5 22.8 2 3 8.6e-08 9.6e-05 22.6 0.7 1 23 157 181 157 181 0.95 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 KLF16-202 - 252 3.6e-15 55.5 22.8 3 3 1.1e-08 1.3e-05 25.4 3.3 1 23 187 209 187 209 0.98 Zinc finger, C2H2 type zf-H2C2_2 PF13465.6 26 KLF16-202 - 252 2.4e-13 49.8 10.5 1 4 0.41 4.6e+02 1.5 1.5 13 24 125 138 124 140 0.82 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 KLF16-202 - 252 2.4e-13 49.8 10.5 2 4 4.4e-10 4.9e-07 29.9 0.7 1 25 143 169 143 170 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 KLF16-202 - 252 2.4e-13 49.8 10.5 3 4 1.3e-10 1.5e-07 31.5 3.3 2 26 174 198 173 198 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 KLF16-202 - 252 2.4e-13 49.8 10.5 4 4 0.31 3.4e+02 1.9 0.9 1 11 201 211 201 216 0.87 Zinc-finger double domain zf-C2H2_4 PF13894.6 24 KLF16-202 - 252 1.4e-07 31.7 20.1 1 3 0.0044 4.9 8.3 3.2 1 23 127 151 127 152 0.88 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 KLF16-202 - 252 1.4e-07 31.7 20.1 2 3 0.00011 0.12 13.3 0.7 1 23 157 181 157 182 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 KLF16-202 - 252 1.4e-07 31.7 20.1 3 3 4.3e-07 0.00048 20.7 2.2 1 23 187 209 187 210 0.96 C2H2-type zinc finger # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/KLF16-202.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/KLF16-202.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/KLF16-202.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/KLF16-202.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/KLF16-202.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:55:19 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-C2H2 PF00096.26 23 KLF16-203 - 115 1.9e-12 46.9 10.5 1 2 2.4e-08 2.9e-05 24.3 0.7 1 23 20 44 20 44 0.95 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 KLF16-203 - 115 1.9e-12 46.9 10.5 2 2 3.3e-09 3.9e-06 27.0 3.3 1 23 50 72 50 72 0.98 Zinc finger, C2H2 type zf-H2C2_2 PF13465.6 26 KLF16-203 - 115 1e-10 41.5 14.6 1 3 0.00023 0.28 11.7 0.0 10 26 15 33 14 33 0.90 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 KLF16-203 - 115 1e-10 41.5 14.6 2 3 3.8e-11 4.6e-08 33.1 3.3 2 26 37 61 36 61 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 KLF16-203 - 115 1e-10 41.5 14.6 3 3 0.11 1.3e+02 3.2 1.1 1 11 64 74 64 81 0.87 Zinc-finger double domain zf-C2H2_4 PF13894.6 24 KLF16-203 - 115 5.5e-08 33.0 9.0 1 2 3e-05 0.036 14.9 0.7 1 23 20 44 20 45 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 KLF16-203 - 115 5.5e-08 33.0 9.0 2 2 1.2e-07 0.00015 22.3 2.2 1 23 50 72 50 73 0.96 C2H2-type zinc finger # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/KLF16-203.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/KLF16-203.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/KLF16-203.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/KLF16-203.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/KLF16-203.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:55:19 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-C2H2 PF00096.26 23 KLF16-204 - 252 3.6e-15 55.5 22.8 1 3 2e-06 0.0023 18.3 4.3 1 23 127 151 127 151 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 KLF16-204 - 252 3.6e-15 55.5 22.8 2 3 8.6e-08 9.6e-05 22.6 0.7 1 23 157 181 157 181 0.95 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 KLF16-204 - 252 3.6e-15 55.5 22.8 3 3 1.1e-08 1.3e-05 25.4 3.3 1 23 187 209 187 209 0.98 Zinc finger, C2H2 type zf-H2C2_2 PF13465.6 26 KLF16-204 - 252 2.4e-13 49.8 10.5 1 4 0.41 4.6e+02 1.5 1.5 13 24 125 138 124 140 0.82 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 KLF16-204 - 252 2.4e-13 49.8 10.5 2 4 4.4e-10 4.9e-07 29.9 0.7 1 25 143 169 143 170 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 KLF16-204 - 252 2.4e-13 49.8 10.5 3 4 1.3e-10 1.5e-07 31.5 3.3 2 26 174 198 173 198 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 KLF16-204 - 252 2.4e-13 49.8 10.5 4 4 0.31 3.4e+02 1.9 0.9 1 11 201 211 201 216 0.87 Zinc-finger double domain zf-C2H2_4 PF13894.6 24 KLF16-204 - 252 1.4e-07 31.7 20.1 1 3 0.0044 4.9 8.3 3.2 1 23 127 151 127 152 0.88 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 KLF16-204 - 252 1.4e-07 31.7 20.1 2 3 0.00011 0.12 13.3 0.7 1 23 157 181 157 182 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 KLF16-204 - 252 1.4e-07 31.7 20.1 3 3 4.3e-07 0.00048 20.7 2.2 1 23 187 209 187 210 0.96 C2H2-type zinc finger # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/KLF16-204.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/KLF16-204.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/KLF16-204.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/KLF16-204.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/KLF16-204.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:55:19 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-C2H2 PF00096.26 23 KLF17-201 - 389 1.7e-13 50.2 25.5 1 3 4.8e-07 0.0014 18.9 5.3 1 23 283 307 283 307 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 KLF17-201 - 389 1.7e-13 50.2 25.5 2 3 6e-08 0.00018 21.8 0.8 1 23 313 337 313 337 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 KLF17-201 - 389 1.7e-13 50.2 25.5 3 3 1.7e-07 0.0005 20.4 4.6 1 23 343 365 343 365 0.99 Zinc finger, C2H2 type zf-H2C2_2 PF13465.6 26 KLF17-201 - 389 1.1e-11 44.6 21.3 1 4 0.006 18 6.0 0.7 13 25 281 295 273 296 0.88 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 KLF17-201 - 389 1.1e-11 44.6 21.3 2 4 8.8e-08 0.00026 21.3 0.6 1 20 299 320 299 325 0.87 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 KLF17-201 - 389 1.1e-11 44.6 21.3 3 4 2.3e-09 6.8e-06 26.3 2.2 2 24 330 352 329 352 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 KLF17-201 - 389 1.1e-11 44.6 21.3 4 4 0.053 1.6e+02 3.0 0.2 1 11 357 367 357 372 0.84 Zinc-finger double domain zf-C2H2_4 PF13894.6 24 KLF17-201 - 389 1e-07 32.2 23.6 1 3 0.0011 3.3 8.8 4.2 1 23 283 307 283 308 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 KLF17-201 - 389 1e-07 32.2 23.6 2 3 1.2e-05 0.036 14.9 1.1 1 23 313 337 313 338 0.90 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 KLF17-201 - 389 1e-07 32.2 23.6 3 3 4e-07 0.0012 19.5 3.5 1 23 343 365 343 366 0.97 C2H2-type zinc finger # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/KLF17-201.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/KLF17-201.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/KLF17-201.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/KLF17-201.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/KLF17-201.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:55:20 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/KLF17-202.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/KLF17-202.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/KLF17-202.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/KLF17-202.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/KLF17-202.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:55:20 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-C2H2 PF00096.26 23 KLF4-201 - 479 2.8e-16 59.0 21.8 1 3 4.5e-08 0.00011 22.4 3.5 1 23 396 420 396 420 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 KLF4-201 - 479 2.8e-16 59.0 21.8 2 3 8.2e-08 0.00021 21.6 0.9 1 23 426 450 426 450 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 KLF4-201 - 479 2.8e-16 59.0 21.8 3 3 4.8e-09 1.2e-05 25.4 2.9 1 23 456 478 456 478 0.99 Zinc finger, C2H2 type zf-H2C2_2 PF13465.6 26 KLF4-201 - 479 1.2e-10 41.3 11.1 1 4 0.27 6.9e+02 1.0 0.4 15 25 396 408 389 409 0.77 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 KLF4-201 - 479 1.2e-10 41.3 11.1 2 4 1.5e-08 3.9e-05 23.9 1.0 1 21 412 434 412 439 0.84 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 KLF4-201 - 479 1.2e-10 41.3 11.1 3 4 1.5e-10 3.9e-07 30.2 3.3 2 25 443 466 442 467 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 KLF4-201 - 479 1.2e-10 41.3 11.1 4 4 4.4 1.1e+04 -2.9 2.0 1 9 470 478 470 479 0.77 Zinc-finger double domain zf-C2H2_4 PF13894.6 24 KLF4-201 - 479 6.3e-08 32.8 19.8 1 3 2.3e-05 0.058 14.3 2.1 1 23 396 420 396 421 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 KLF4-201 - 479 6.3e-08 32.8 19.8 2 3 8.8e-05 0.23 12.4 0.8 1 23 426 450 426 451 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 KLF4-201 - 479 6.3e-08 32.8 19.8 3 3 5.4e-06 0.014 16.2 2.7 1 23 456 478 456 479 0.96 C2H2-type zinc finger # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/KLF4-201.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/KLF4-201.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/KLF4-201.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/KLF4-201.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/KLF4-201.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:55:20 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/KLF4-202.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/KLF4-202.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/KLF4-202.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/KLF4-202.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/KLF4-202.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:55:21 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/KLF4-203.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/KLF4-203.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/KLF4-203.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/KLF4-203.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/KLF4-203.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:55:21 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-C2H2 PF00096.26 23 KLF4-204 - 513 3.2e-16 58.8 21.8 1 3 4.9e-08 0.00012 22.3 3.5 1 23 430 454 430 454 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 KLF4-204 - 513 3.2e-16 58.8 21.8 2 3 8.9e-08 0.00023 21.5 0.9 1 23 460 484 460 484 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 KLF4-204 - 513 3.2e-16 58.8 21.8 3 3 5.2e-09 1.3e-05 25.3 2.9 1 23 490 512 490 512 0.99 Zinc finger, C2H2 type zf-H2C2_2 PF13465.6 26 KLF4-204 - 513 1.6e-10 40.9 11.1 1 4 0.29 7.4e+02 0.9 0.4 15 25 430 442 423 443 0.77 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 KLF4-204 - 513 1.6e-10 40.9 11.1 2 4 1.6e-08 4.2e-05 23.8 1.0 1 21 446 468 446 473 0.84 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 KLF4-204 - 513 1.6e-10 40.9 11.1 3 4 1.6e-10 4.2e-07 30.1 3.3 2 25 477 500 476 501 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 KLF4-204 - 513 1.6e-10 40.9 11.1 4 4 4.8 1.2e+04 -3.0 2.0 1 9 504 512 504 513 0.77 Zinc-finger double domain zf-C2H2_4 PF13894.6 24 KLF4-204 - 513 7.8e-08 32.5 19.8 1 3 2.5e-05 0.063 14.1 2.1 1 23 430 454 430 455 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 KLF4-204 - 513 7.8e-08 32.5 19.8 2 3 9.6e-05 0.25 12.3 0.8 1 23 460 484 460 485 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 KLF4-204 - 513 7.8e-08 32.5 19.8 3 3 5.9e-06 0.015 16.1 2.7 1 23 490 512 490 513 0.96 C2H2-type zinc finger # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/KLF4-204.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/KLF4-204.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/KLF4-204.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/KLF4-204.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/KLF4-204.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:55:22 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-C2H2 PF00096.26 23 KLF4-205 - 429 2.1e-16 59.4 21.8 1 3 4.5e-08 0.0001 22.6 3.5 1 23 346 370 346 370 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 KLF4-205 - 429 2.1e-16 59.4 21.8 2 3 8.2e-08 0.00018 21.8 0.9 1 23 376 400 376 400 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 KLF4-205 - 429 2.1e-16 59.4 21.8 3 3 4.8e-09 1.1e-05 25.6 2.9 1 23 406 428 406 428 0.99 Zinc finger, C2H2 type zf-H2C2_2 PF13465.6 26 KLF4-205 - 429 8.4e-11 41.8 11.1 1 4 0.27 6e+02 1.2 0.4 15 25 346 358 339 359 0.77 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 KLF4-205 - 429 8.4e-11 41.8 11.1 2 4 1.5e-08 3.4e-05 24.1 1.0 1 21 362 384 362 389 0.84 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 KLF4-205 - 429 8.4e-11 41.8 11.1 3 4 1.5e-10 3.4e-07 30.4 3.3 2 25 393 416 392 417 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 KLF4-205 - 429 8.4e-11 41.8 11.1 4 4 4.5 1e+04 -2.7 2.0 1 9 420 428 420 429 0.77 Zinc-finger double domain zf-C2H2_4 PF13894.6 24 KLF4-205 - 429 5.1e-08 33.1 19.8 1 3 2.3e-05 0.051 14.4 2.1 1 23 346 370 346 371 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 KLF4-205 - 429 5.1e-08 33.1 19.8 2 3 8.8e-05 0.2 12.6 0.8 1 23 376 400 376 401 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 KLF4-205 - 429 5.1e-08 33.1 19.8 3 3 5.4e-06 0.012 16.4 2.7 1 23 406 428 406 429 0.96 C2H2-type zinc finger # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/KLF4-205.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/KLF4-205.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/KLF4-205.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/KLF4-205.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/KLF4-205.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:55:22 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-C2H2 PF00096.26 23 KLF4-206 - 154 4.6e-18 64.6 21.8 1 3 1.5e-08 2.5e-05 24.5 3.5 1 23 71 95 71 95 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 KLF4-206 - 154 4.6e-18 64.6 21.8 2 3 2.8e-08 4.5e-05 23.7 0.9 1 23 101 125 101 125 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 KLF4-206 - 154 4.6e-18 64.6 21.8 3 3 1.7e-09 2.7e-06 27.5 2.9 1 23 131 153 131 153 0.99 Zinc finger, C2H2 type zf-H2C2_2 PF13465.6 26 KLF4-206 - 154 1.8e-12 47.1 11.1 1 4 0.1 1.7e+02 2.9 0.4 15 25 71 83 64 84 0.77 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 KLF4-206 - 154 1.8e-12 47.1 11.1 2 4 5.1e-09 8.4e-06 26.0 1.0 1 21 87 109 87 114 0.84 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 KLF4-206 - 154 1.8e-12 47.1 11.1 3 4 5.1e-11 8.3e-08 32.3 3.3 2 25 118 141 117 142 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 KLF4-206 - 154 1.8e-12 47.1 11.1 4 4 1.9 3.1e+03 -1.1 2.0 1 9 145 153 145 154 0.77 Zinc-finger double domain zf-C2H2_4 PF13894.6 24 KLF4-206 - 154 9.8e-10 38.4 19.8 1 3 7.5e-06 0.012 16.4 2.1 1 23 71 95 71 96 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 KLF4-206 - 154 9.8e-10 38.4 19.8 2 3 2.9e-05 0.048 14.5 0.8 1 23 101 125 101 126 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 KLF4-206 - 154 9.8e-10 38.4 19.8 3 3 1.8e-06 0.003 18.3 2.7 1 23 131 153 131 154 0.96 C2H2-type zinc finger # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/KLF4-206.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/KLF4-206.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/KLF4-206.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/KLF4-206.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/KLF4-206.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:55:22 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-C2H2 PF00096.26 23 KLF5-201 - 457 8.5e-17 60.6 20.9 1 3 4.2e-07 0.00095 19.5 4.0 1 23 373 397 373 397 0.95 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 KLF5-201 - 457 8.5e-17 60.6 20.9 2 3 2.5e-08 5.5e-05 23.4 0.6 1 23 403 427 403 427 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 KLF5-201 - 457 8.5e-17 60.6 20.9 3 3 1.2e-09 2.8e-06 27.5 2.4 1 23 433 455 433 455 0.99 Zinc finger, C2H2 type zf-H2C2_2 PF13465.6 26 KLF5-201 - 457 2.7e-11 43.4 7.4 1 4 1.4 3.2e+03 -1.1 0.5 14 25 372 385 368 386 0.70 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 KLF5-201 - 457 2.7e-11 43.4 7.4 2 4 9.8e-09 2.2e-05 24.7 0.7 1 20 389 410 389 416 0.84 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 KLF5-201 - 457 2.7e-11 43.4 7.4 3 4 1.6e-10 3.5e-07 30.4 1.0 2 25 420 443 419 444 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 KLF5-201 - 457 2.7e-11 43.4 7.4 4 4 2.3 5.2e+03 -1.8 1.7 1 9 447 455 447 457 0.77 Zinc-finger double domain zf-C2H2_4 PF13894.6 24 KLF5-201 - 457 6.6e-09 35.9 20.2 1 4 8 1.8e+04 -2.9 0.0 10 22 151 163 150 164 0.78 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 KLF5-201 - 457 6.6e-09 35.9 20.2 2 4 9.7e-05 0.22 12.5 2.7 1 23 373 397 373 398 0.91 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 KLF5-201 - 457 6.6e-09 35.9 20.2 3 4 3.4e-05 0.077 13.9 0.6 1 23 403 427 403 428 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 KLF5-201 - 457 6.6e-09 35.9 20.2 4 4 4e-07 0.00089 19.9 1.8 1 23 433 455 433 456 0.96 C2H2-type zinc finger # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/KLF5-201.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/KLF5-201.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/KLF5-201.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/KLF5-201.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/KLF5-201.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:55:23 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/KLF5-202.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/KLF5-202.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/KLF5-202.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/KLF5-202.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/KLF5-202.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:55:23 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/KLF5-203.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/KLF5-203.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/KLF5-203.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/KLF5-203.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/KLF5-203.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:55:23 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/KLF5-204.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/KLF5-204.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/KLF5-204.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/KLF5-204.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/KLF5-204.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:55:24 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-C2H2 PF00096.26 23 KLF5-205 - 366 3.5e-17 61.8 20.9 1 3 3.2e-07 0.00072 19.9 4.0 1 23 282 306 282 306 0.95 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 KLF5-205 - 366 3.5e-17 61.8 20.9 2 3 1.9e-08 4.2e-05 23.8 0.6 1 23 312 336 312 336 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 KLF5-205 - 366 3.5e-17 61.8 20.9 3 3 9.4e-10 2.1e-06 27.9 2.4 1 23 342 364 342 364 0.99 Zinc finger, C2H2 type zf-H2C2_2 PF13465.6 26 KLF5-205 - 366 1.2e-11 44.4 7.4 1 4 1.1 2.5e+03 -0.8 0.5 14 25 281 294 277 295 0.70 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 KLF5-205 - 366 1.2e-11 44.4 7.4 2 4 7.5e-09 1.7e-05 25.0 0.7 1 20 298 319 298 325 0.84 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 KLF5-205 - 366 1.2e-11 44.4 7.4 3 4 1.2e-10 2.7e-07 30.7 1.0 2 25 329 352 328 353 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 KLF5-205 - 366 1.2e-11 44.4 7.4 4 4 1.8 4e+03 -1.5 1.7 1 9 356 364 356 366 0.77 Zinc-finger double domain zf-C2H2_4 PF13894.6 24 KLF5-205 - 366 2.7e-09 37.1 20.2 1 4 6.6 1.5e+04 -2.6 0.0 10 22 60 72 59 73 0.78 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 KLF5-205 - 366 2.7e-09 37.1 20.2 2 4 7.3e-05 0.16 12.9 2.7 1 23 282 306 282 307 0.91 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 KLF5-205 - 366 2.7e-09 37.1 20.2 3 4 2.6e-05 0.058 14.3 0.6 1 23 312 336 312 337 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 KLF5-205 - 366 2.7e-09 37.1 20.2 4 4 3e-07 0.00068 20.3 1.8 1 23 342 364 342 365 0.96 C2H2-type zinc finger # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/KLF5-205.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/KLF5-205.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/KLF5-205.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/KLF5-205.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/KLF5-205.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:55:24 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/KLF6-201.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/KLF6-201.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/KLF6-201.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/KLF6-201.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/KLF6-201.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:55:25 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/KLF6-202.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/KLF6-202.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/KLF6-202.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/KLF6-202.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/KLF6-202.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:55:25 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/KLF6-203.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/KLF6-203.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/KLF6-203.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/KLF6-203.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/KLF6-203.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:55:25 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/KLF6-204.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/KLF6-204.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/KLF6-204.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/KLF6-204.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/KLF6-204.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:55:26 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/KLF6-205.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/KLF6-205.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/KLF6-205.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/KLF6-205.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/KLF6-205.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:55:26 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-C2H2 PF00096.26 23 KLF6-206 - 283 9.5e-14 51.0 31.7 1 3 1.2e-06 0.0027 18.1 8.1 1 23 200 224 200 224 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 KLF6-206 - 283 9.5e-14 51.0 31.7 2 3 2.2e-07 0.00048 20.4 0.5 1 23 230 254 230 254 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 KLF6-206 - 283 9.5e-14 51.0 31.7 3 3 3.5e-08 7.9e-05 22.9 8.9 1 23 260 282 260 282 0.99 Zinc finger, C2H2 type zf-H2C2_2 PF13465.6 26 KLF6-206 - 283 3e-10 40.0 13.7 1 4 1.1 2.4e+03 -0.7 0.1 15 25 200 212 195 213 0.71 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 KLF6-206 - 283 3e-10 40.0 13.7 2 4 2e-08 4.4e-05 23.7 0.6 1 18 216 233 216 242 0.90 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 KLF6-206 - 283 3e-10 40.0 13.7 3 4 7.9e-10 1.8e-06 28.1 6.5 2 25 247 270 246 271 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 KLF6-206 - 283 3e-10 40.0 13.7 4 4 3.3 7.5e+03 -2.3 2.5 1 9 274 282 274 283 0.78 Zinc-finger double domain # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/KLF6-206.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/KLF6-206.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/KLF6-206.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/KLF6-206.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/KLF6-206.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:55:26 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/KLF6-207.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/KLF6-207.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/KLF6-207.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/KLF6-207.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/KLF6-207.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:55:27 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-C2H2 PF00096.26 23 KLF7-201 - 302 5.7e-14 51.7 31.4 1 4 7 1.8e+04 -3.9 0.0 15 20 143 148 140 148 0.74 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 KLF7-201 - 302 5.7e-14 51.7 31.4 2 4 1e-06 0.0027 18.1 5.8 1 23 219 243 219 243 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 KLF7-201 - 302 5.7e-14 51.7 31.4 3 4 5.4e-08 0.00014 22.1 0.5 1 23 249 273 249 273 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 KLF7-201 - 302 5.7e-14 51.7 31.4 4 4 1.9e-08 5e-05 23.5 8.7 1 23 279 301 279 301 0.99 Zinc finger, C2H2 type zf-H2C2_2 PF13465.6 26 KLF7-201 - 302 1.9e-09 37.5 14.0 1 5 3.5 9e+03 -2.6 0.0 2 6 144 148 143 151 0.79 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 KLF7-201 - 302 1.9e-09 37.5 14.0 2 5 0.38 9.7e+02 0.5 0.5 12 25 215 231 213 232 0.71 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 KLF7-201 - 302 1.9e-09 37.5 14.0 3 5 7.5e-09 1.9e-05 24.8 0.7 1 18 235 252 235 261 0.90 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 KLF7-201 - 302 1.9e-09 37.5 14.0 4 5 8.5e-09 2.2e-05 24.7 6.6 2 25 266 289 265 290 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 KLF7-201 - 302 1.9e-09 37.5 14.0 5 5 2.3 5.9e+03 -2.0 2.1 2 9 294 301 293 302 0.76 Zinc-finger double domain zf-C2H2_4 PF13894.6 24 KLF7-201 - 302 7.1e-07 29.5 26.6 1 4 2 5.1e+03 -1.1 0.0 12 21 140 149 139 151 0.77 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 KLF7-201 - 302 7.1e-07 29.5 26.6 2 4 0.0011 2.7 9.1 4.2 1 23 219 243 219 244 0.90 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 KLF7-201 - 302 7.1e-07 29.5 26.6 3 4 2.5e-05 0.063 14.1 0.7 1 23 249 273 249 274 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 KLF7-201 - 302 7.1e-07 29.5 26.6 4 4 3.9e-06 0.0099 16.6 6.1 1 23 279 301 279 302 0.96 C2H2-type zinc finger # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/KLF7-201.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/KLF7-201.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/KLF7-201.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/KLF7-201.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/KLF7-201.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:55:27 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-C2H2 PF00096.26 23 KLF7-202 - 274 2.7e-14 52.7 31.0 1 4 6 1.8e+04 -3.5 0.0 15 20 115 120 112 121 0.76 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 KLF7-202 - 274 2.7e-14 52.7 31.0 2 4 7.9e-07 0.0024 18.3 5.8 1 23 191 215 191 215 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 KLF7-202 - 274 2.7e-14 52.7 31.0 3 4 4.1e-08 0.00012 22.3 0.5 1 23 221 245 221 245 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 KLF7-202 - 274 2.7e-14 52.7 31.0 4 4 1.5e-08 4.4e-05 23.7 8.7 1 23 251 273 251 273 0.99 Zinc finger, C2H2 type zf-H2C2_2 PF13465.6 26 KLF7-202 - 274 1.3e-09 38.0 14.0 1 5 2.7 8.1e+03 -2.4 0.0 2 6 116 120 115 123 0.79 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 KLF7-202 - 274 1.3e-09 38.0 14.0 2 5 0.29 8.6e+02 0.7 0.5 12 25 187 203 185 204 0.71 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 KLF7-202 - 274 1.3e-09 38.0 14.0 3 5 5.7e-09 1.7e-05 25.0 0.7 1 18 207 224 207 233 0.90 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 KLF7-202 - 274 1.3e-09 38.0 14.0 4 5 6.4e-09 1.9e-05 24.8 6.6 2 25 238 261 237 262 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 KLF7-202 - 274 1.3e-09 38.0 14.0 5 5 1.8 5.3e+03 -1.8 2.1 2 9 266 273 265 274 0.76 Zinc-finger double domain zf-C2H2_4 PF13894.6 24 KLF7-202 - 274 4.1e-07 30.3 26.6 1 4 1.5 4.5e+03 -1.0 0.0 12 21 112 121 111 123 0.77 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 KLF7-202 - 274 4.1e-07 30.3 26.6 2 4 0.0008 2.4 9.2 4.2 1 23 191 215 191 216 0.90 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 KLF7-202 - 274 4.1e-07 30.3 26.6 3 4 1.8e-05 0.055 14.3 0.7 1 23 221 245 221 246 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 KLF7-202 - 274 4.1e-07 30.3 26.6 4 4 2.9e-06 0.0087 16.8 6.1 1 23 251 273 251 274 0.96 C2H2-type zinc finger # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/KLF7-202.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/KLF7-202.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/KLF7-202.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/KLF7-202.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/KLF7-202.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:55:27 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-C2H2 PF00096.26 23 KLF7-203 - 269 2.5e-14 52.8 31.0 1 4 6 1.8e+04 -3.5 0.0 15 20 110 115 107 116 0.76 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 KLF7-203 - 269 2.5e-14 52.8 31.0 2 4 7.7e-07 0.0023 18.3 5.8 1 23 186 210 186 210 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 KLF7-203 - 269 2.5e-14 52.8 31.0 3 4 4e-08 0.00012 22.3 0.5 1 23 216 240 216 240 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 KLF7-203 - 269 2.5e-14 52.8 31.0 4 4 1.4e-08 4.3e-05 23.7 8.7 1 23 246 268 246 268 0.99 Zinc finger, C2H2 type zf-H2C2_2 PF13465.6 26 KLF7-203 - 269 1.3e-09 38.1 14.0 1 5 2.6 7.9e+03 -2.4 0.0 2 6 111 115 110 118 0.79 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 KLF7-203 - 269 1.3e-09 38.1 14.0 2 5 0.28 8.4e+02 0.7 0.5 12 25 182 198 180 199 0.71 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 KLF7-203 - 269 1.3e-09 38.1 14.0 3 5 5.5e-09 1.7e-05 25.1 0.7 1 18 202 219 202 228 0.90 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 KLF7-203 - 269 1.3e-09 38.1 14.0 4 5 6.3e-09 1.9e-05 24.9 6.6 2 25 233 256 232 257 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 KLF7-203 - 269 1.3e-09 38.1 14.0 5 5 1.7 5.2e+03 -1.8 2.1 2 9 261 268 260 269 0.76 Zinc-finger double domain zf-C2H2_4 PF13894.6 24 KLF7-203 - 269 4.1e-07 30.3 26.6 1 4 1.5 4.4e+03 -0.9 0.0 12 21 107 116 106 118 0.77 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 KLF7-203 - 269 4.1e-07 30.3 26.6 2 4 0.00078 2.3 9.3 4.2 1 23 186 210 186 211 0.90 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 KLF7-203 - 269 4.1e-07 30.3 26.6 3 4 1.8e-05 0.054 14.4 0.7 1 23 216 240 216 241 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 KLF7-203 - 269 4.1e-07 30.3 26.6 4 4 2.8e-06 0.0085 16.9 6.1 1 23 246 268 246 269 0.96 C2H2-type zinc finger # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/KLF7-203.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/KLF7-203.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/KLF7-203.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/KLF7-203.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/KLF7-203.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:55:28 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/KLF7-204.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/KLF7-204.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/KLF7-204.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/KLF7-204.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/KLF7-204.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:55:28 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/KLF7-205.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/KLF7-205.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/KLF7-205.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/KLF7-205.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/KLF7-205.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:55:28 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/KLF7-206.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/KLF7-206.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/KLF7-206.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/KLF7-206.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/KLF7-206.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:55:29 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/KLF7-207.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/KLF7-207.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/KLF7-207.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/KLF7-207.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/KLF7-207.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:55:29 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/KLF7-208.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/KLF7-208.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/KLF7-208.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/KLF7-208.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/KLF7-208.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:55:29 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-C2H2 PF00096.26 23 KLF7-209 - 112 5.8e-12 45.4 15.5 1 2 1.2e-08 3.2e-05 24.2 0.5 1 23 59 83 59 83 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 KLF7-209 - 112 5.8e-12 45.4 15.5 2 2 4.6e-09 1.2e-05 25.5 8.7 1 23 89 111 89 111 0.99 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 KLF7-209 - 112 3.7e-07 30.4 13.3 1 2 5.4e-06 0.014 16.2 0.7 1 23 59 83 59 84 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 KLF7-209 - 112 3.7e-07 30.4 13.3 2 2 8.9e-07 0.0023 18.6 6.1 1 23 89 111 89 112 0.96 C2H2-type zinc finger # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/KLF7-209.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/KLF7-209.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/KLF7-209.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/KLF7-209.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/KLF7-209.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:55:30 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/KLF7-210.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/KLF7-210.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/KLF7-210.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/KLF7-210.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/KLF7-210.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:55:30 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/KLF8-201.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/KLF8-201.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/KLF8-201.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/KLF8-201.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/KLF8-201.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:55:30 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/KLF8-202.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/KLF8-202.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/KLF8-202.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/KLF8-202.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/KLF8-202.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:55:31 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/KLF8-203.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/KLF8-203.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/KLF8-203.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/KLF8-203.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/KLF8-203.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:55:31 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-C2H2 PF00096.26 23 KLF8-204 - 359 1.3e-14 53.8 24.4 1 3 7e-07 0.0013 19.1 3.4 1 23 274 298 274 298 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 KLF8-204 - 359 1.3e-14 53.8 24.4 2 3 1.7e-07 0.00031 21.0 0.8 1 23 304 328 304 328 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 KLF8-204 - 359 1.3e-14 53.8 24.4 3 3 1.2e-08 2.1e-05 24.7 5.5 1 23 334 356 334 356 0.99 Zinc finger, C2H2 type zf-H2C2_2 PF13465.6 26 KLF8-204 - 359 6.7e-11 42.1 8.7 1 4 0.19 3.4e+02 1.9 0.2 13 25 272 286 269 287 0.76 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 KLF8-204 - 359 6.7e-11 42.1 8.7 2 4 3.6e-08 6.5e-05 23.2 0.7 1 18 290 307 290 317 0.84 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 KLF8-204 - 359 6.7e-11 42.1 8.7 3 4 1.5e-10 2.7e-07 30.7 1.8 2 25 321 344 320 345 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 KLF8-204 - 359 6.7e-11 42.1 8.7 4 4 10 1.8e+04 -3.9 3.2 1 9 348 356 348 357 0.86 Zinc-finger double domain zf-C2H2_4 PF13894.6 24 KLF8-204 - 359 1.9e-07 31.3 20.7 1 3 0.00082 1.5 9.9 2.5 1 23 274 298 274 299 0.90 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 KLF8-204 - 359 1.9e-07 31.3 20.7 2 3 2.3e-05 0.042 14.7 0.9 1 23 304 328 304 329 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 KLF8-204 - 359 1.9e-07 31.3 20.7 3 3 2.9e-06 0.0052 17.5 2.9 1 23 334 356 334 357 0.96 C2H2-type zinc finger # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/KLF8-204.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/KLF8-204.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/KLF8-204.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/KLF8-204.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/KLF8-204.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:55:31 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/KLF8-205.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/KLF8-205.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/KLF8-205.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/KLF8-205.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/KLF8-205.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:55:32 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/KLF8-206.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/KLF8-206.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/KLF8-206.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/KLF8-206.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/KLF8-206.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:55:32 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-C2H2 PF00096.26 23 KLF9-201 - 244 1.9e-15 56.4 23.0 1 4 4.8 7.8e+03 -2.3 0.0 5 16 57 68 56 68 0.81 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 KLF9-201 - 244 1.9e-15 56.4 23.0 2 4 2.5e-07 0.0004 20.7 2.7 1 23 143 167 143 167 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 KLF9-201 - 244 1.9e-15 56.4 23.0 3 4 2.8e-08 4.6e-05 23.6 1.1 1 23 173 197 173 197 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 KLF9-201 - 244 1.9e-15 56.4 23.0 4 4 5e-08 8.1e-05 22.9 4.0 1 23 203 225 203 225 0.99 Zinc finger, C2H2 type zf-H2C2_2 PF13465.6 26 KLF9-201 - 244 1.1e-14 54.1 30.8 1 4 0.00063 1 9.9 1.6 8 25 136 155 133 156 0.85 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 KLF9-201 - 244 1.1e-14 54.1 30.8 2 4 5.2e-09 8.5e-06 26.0 2.0 1 25 159 185 159 186 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 KLF9-201 - 244 1.1e-14 54.1 30.8 3 4 3.4e-11 5.5e-08 32.9 2.7 2 24 190 212 189 212 0.97 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 KLF9-201 - 244 1.1e-14 54.1 30.8 4 4 0.16 2.6e+02 2.3 2.0 1 10 217 226 217 234 0.88 Zinc-finger double domain zf-C2H2_4 PF13894.6 24 KLF9-201 - 244 2.1e-08 34.3 22.0 1 3 0.00013 0.21 12.5 2.2 1 23 143 167 143 168 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 KLF9-201 - 244 2.1e-08 34.3 22.0 2 3 3.7e-05 0.06 14.2 0.8 1 23 173 197 173 198 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 KLF9-201 - 244 2.1e-08 34.3 22.0 3 3 7.3e-07 0.0012 19.5 2.8 1 23 203 225 203 226 0.97 C2H2-type zinc finger # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/KLF9-201.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/KLF9-201.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/KLF9-201.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/KLF9-201.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/KLF9-201.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:55:32 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-C2H2_4 PF13894.6 24 MAZ-201 - 493 6.3e-27 91.9 53.1 1 8 9.5e-05 0.085 13.7 0.1 1 23 190 212 190 213 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 MAZ-201 - 493 6.3e-27 91.9 53.1 2 8 9.4e-06 0.0085 16.9 2.4 1 23 279 301 279 302 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 MAZ-201 - 493 6.3e-27 91.9 53.1 3 8 4.3e-07 0.00039 21.0 1.4 1 23 307 329 307 330 0.97 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 MAZ-201 - 493 6.3e-27 91.9 53.1 4 8 2e-07 0.00018 22.0 3.4 1 24 337 360 337 360 0.97 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 MAZ-201 - 493 6.3e-27 91.9 53.1 5 8 1.6e-05 0.015 16.1 0.2 1 23 366 388 366 389 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 MAZ-201 - 493 6.3e-27 91.9 53.1 6 8 0.00073 0.66 11.0 0.5 2 23 393 413 392 414 0.86 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 MAZ-201 - 493 6.3e-27 91.9 53.1 7 8 0.00029 0.26 12.2 0.3 1 24 419 442 419 442 0.90 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 MAZ-201 - 493 6.3e-27 91.9 53.1 8 8 0.00054 0.49 11.4 1.6 3 23 454 474 452 475 0.95 C2H2-type zinc finger zf-C2H2 PF00096.26 23 MAZ-201 - 493 1.9e-26 91.0 55.6 1 8 5e-05 0.045 14.2 0.1 1 23 190 212 190 212 0.95 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 MAZ-201 - 493 1.9e-26 91.0 55.6 2 8 2.5e-06 0.0022 18.3 2.8 1 23 279 301 279 301 0.94 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 MAZ-201 - 493 1.9e-26 91.0 55.6 3 8 1.9e-05 0.017 15.5 2.6 1 23 307 329 307 329 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 MAZ-201 - 493 1.9e-26 91.0 55.6 4 8 6.3e-09 5.7e-06 26.5 3.7 1 23 337 360 337 360 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 MAZ-201 - 493 1.9e-26 91.0 55.6 5 8 4.1e-05 0.037 14.5 0.2 1 23 366 388 366 388 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 MAZ-201 - 493 1.9e-26 91.0 55.6 6 8 0.0043 3.9 8.1 0.4 2 23 393 413 392 413 0.91 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 MAZ-201 - 493 1.9e-26 91.0 55.6 7 8 1.8e-05 0.016 15.6 0.3 1 23 419 442 419 442 0.93 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 MAZ-201 - 493 1.9e-26 91.0 55.6 8 8 0.00076 0.68 10.5 2.4 3 23 454 474 453 474 0.99 Zinc finger, C2H2 type zf-H2C2_2 PF13465.6 26 MAZ-201 - 493 2.1e-19 69.0 58.5 1 10 0.014 12 6.5 1.0 10 26 185 201 181 201 0.82 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 MAZ-201 - 493 2.1e-19 69.0 58.5 2 10 0.0051 4.6 7.8 0.1 1 13 204 216 204 219 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 MAZ-201 - 493 2.1e-19 69.0 58.5 3 10 0.057 51 4.5 0.1 13 24 277 288 271 289 0.81 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 MAZ-201 - 493 2.1e-19 69.0 58.5 4 10 6.7e-09 6e-06 26.4 2.7 1 26 293 318 293 318 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 MAZ-201 - 493 2.1e-19 69.0 58.5 5 10 7.1e-07 0.00063 20.0 2.5 3 25 323 347 321 348 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 MAZ-201 - 493 2.1e-19 69.0 58.5 6 10 1.4e-07 0.00012 22.3 0.6 1 26 351 377 351 377 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 MAZ-201 - 493 2.1e-19 69.0 58.5 7 10 0.24 2.2e+02 2.5 0.6 2 22 381 399 380 403 0.73 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 MAZ-201 - 493 2.1e-19 69.0 58.5 8 10 2.4e-05 0.021 15.2 1.1 4 26 408 430 406 430 0.85 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 MAZ-201 - 493 2.1e-19 69.0 58.5 9 10 3.9 3.5e+03 -1.3 0.1 16 23 453 460 435 463 0.77 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 MAZ-201 - 493 2.1e-19 69.0 58.5 10 10 8.6 7.7e+03 -2.3 0.1 5 11 470 476 467 477 0.83 Zinc-finger double domain zf-C2H2_jaz PF12171.8 27 MAZ-201 - 493 2.1e-12 47.0 33.7 1 8 2.2e-05 0.02 15.2 0.1 2 21 190 209 189 210 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 MAZ-201 - 493 2.1e-12 47.0 33.7 2 8 0.0064 5.7 7.3 1.3 2 24 279 301 278 302 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 MAZ-201 - 493 2.1e-12 47.0 33.7 3 8 0.18 1.6e+02 2.8 0.3 4 24 309 329 306 335 0.89 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 MAZ-201 - 493 2.1e-12 47.0 33.7 4 8 0.001 0.9 9.9 0.2 2 22 337 357 336 358 0.91 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 MAZ-201 - 493 2.1e-12 47.0 33.7 5 8 0.0091 8.1 6.9 0.0 2 20 366 384 365 385 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 MAZ-201 - 493 2.1e-12 47.0 33.7 6 8 0.99 8.9e+02 0.4 0.0 4 14 394 404 393 405 0.88 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 MAZ-201 - 493 2.1e-12 47.0 33.7 7 8 0.00044 0.4 11.0 0.3 2 20 419 437 418 437 0.86 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 MAZ-201 - 493 2.1e-12 47.0 33.7 8 8 0.00014 0.13 12.6 0.7 4 24 454 474 454 475 0.95 Zinc-finger double-stranded RNA-binding zf-met PF12874.7 25 MAZ-201 - 493 3.5e-10 39.9 39.2 1 8 0.032 29 5.2 0.2 1 21 190 210 190 213 0.89 Zinc-finger of C2H2 type zf-met PF12874.7 25 MAZ-201 - 493 3.5e-10 39.9 39.2 2 8 0.049 44 4.6 1.0 3 22 281 300 279 301 0.89 Zinc-finger of C2H2 type zf-met PF12874.7 25 MAZ-201 - 493 3.5e-10 39.9 39.2 3 8 0.003 2.7 8.5 0.5 1 23 307 329 307 329 0.91 Zinc-finger of C2H2 type zf-met PF12874.7 25 MAZ-201 - 493 3.5e-10 39.9 39.2 4 8 0.00025 0.22 12.0 0.7 1 20 337 356 337 357 0.93 Zinc-finger of C2H2 type zf-met PF12874.7 25 MAZ-201 - 493 3.5e-10 39.9 39.2 5 8 0.25 2.2e+02 2.4 0.1 1 19 366 384 366 386 0.90 Zinc-finger of C2H2 type zf-met PF12874.7 25 MAZ-201 - 493 3.5e-10 39.9 39.2 6 8 0.53 4.7e+02 1.4 0.0 3 12 394 403 393 405 0.91 Zinc-finger of C2H2 type zf-met PF12874.7 25 MAZ-201 - 493 3.5e-10 39.9 39.2 7 8 2e-05 0.017 15.5 0.1 2 19 420 437 419 438 0.94 Zinc-finger of C2H2 type zf-met PF12874.7 25 MAZ-201 - 493 3.5e-10 39.9 39.2 8 8 0.00013 0.11 12.9 1.9 3 21 454 472 453 474 0.95 Zinc-finger of C2H2 type zf-C2H2_6 PF13912.6 27 MAZ-201 - 493 5.8e-07 29.3 49.9 1 7 0.0002 0.18 11.8 0.2 2 21 190 209 190 213 0.91 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 MAZ-201 - 493 5.8e-07 29.3 49.9 2 7 0.0018 1.6 8.8 1.7 2 26 279 303 278 304 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 MAZ-201 - 493 5.8e-07 29.3 49.9 3 7 0.077 69 3.6 0.4 2 13 307 318 307 330 0.79 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 MAZ-201 - 493 5.8e-07 29.3 49.9 4 7 6e-05 0.054 13.5 2.7 2 26 337 361 337 362 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 MAZ-201 - 493 5.8e-07 29.3 49.9 5 7 0.00011 0.095 12.7 0.3 2 26 366 390 366 391 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 MAZ-201 - 493 5.8e-07 29.3 49.9 6 7 0.11 1e+02 3.1 0.1 4 13 394 403 393 405 0.84 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 MAZ-201 - 493 5.8e-07 29.3 49.9 7 7 0.006 5.3 7.1 0.2 1 13 418 430 418 437 0.91 C2H2-type zinc finger # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/MAZ-201.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/MAZ-201.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/MAZ-201.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/MAZ-201.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/MAZ-201.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:55:33 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-C2H2_4 PF13894.6 24 MAZ-202 - 477 5e-21 73.6 45.8 1 7 0.00011 0.082 13.8 0.1 1 23 190 212 190 213 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 MAZ-202 - 477 5e-21 73.6 45.8 2 7 1e-05 0.0081 16.9 2.4 1 23 279 301 279 302 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 MAZ-202 - 477 5e-21 73.6 45.8 3 7 4.8e-07 0.00037 21.1 1.4 1 23 307 329 307 330 0.97 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 MAZ-202 - 477 5e-21 73.6 45.8 4 7 2.2e-07 0.00017 22.1 3.4 1 24 337 360 337 360 0.97 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 MAZ-202 - 477 5e-21 73.6 45.8 5 7 1.8e-05 0.014 16.2 0.2 1 23 366 388 366 389 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 MAZ-202 - 477 5e-21 73.6 45.8 6 7 0.00081 0.63 11.0 0.5 2 23 393 413 392 414 0.86 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 MAZ-202 - 477 5e-21 73.6 45.8 7 7 3.6 2.8e+03 -0.3 0.8 1 8 419 426 419 432 0.85 C2H2-type zinc finger zf-H2C2_2 PF13465.6 26 MAZ-202 - 477 1.7e-20 72.4 49.1 1 8 0.015 12 6.5 1.0 10 26 185 201 181 201 0.82 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 MAZ-202 - 477 1.7e-20 72.4 49.1 2 8 0.0057 4.4 7.9 0.1 1 13 204 216 204 219 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 MAZ-202 - 477 1.7e-20 72.4 49.1 3 8 0.063 49 4.6 0.1 13 24 277 288 271 289 0.81 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 MAZ-202 - 477 1.7e-20 72.4 49.1 4 8 7.4e-09 5.8e-06 26.5 2.7 1 26 293 318 293 318 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 MAZ-202 - 477 1.7e-20 72.4 49.1 5 8 7.8e-07 0.00061 20.1 2.5 3 25 323 347 321 348 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 MAZ-202 - 477 1.7e-20 72.4 49.1 6 8 1.5e-07 0.00012 22.4 0.6 1 26 351 377 351 377 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 MAZ-202 - 477 1.7e-20 72.4 49.1 7 8 0.27 2.1e+02 2.6 0.6 2 22 381 399 380 403 0.73 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 MAZ-202 - 477 1.7e-20 72.4 49.1 8 8 0.00046 0.36 11.3 0.7 4 24 408 428 406 429 0.82 Zinc-finger double domain zf-C2H2 PF00096.26 23 MAZ-202 - 477 1.7e-20 72.2 45.4 1 7 5.6e-05 0.043 14.3 0.1 1 23 190 212 190 212 0.95 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 MAZ-202 - 477 1.7e-20 72.2 45.4 2 7 2.8e-06 0.0022 18.4 2.8 1 23 279 301 279 301 0.94 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 MAZ-202 - 477 1.7e-20 72.2 45.4 3 7 2.1e-05 0.017 15.6 2.6 1 23 307 329 307 329 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 MAZ-202 - 477 1.7e-20 72.2 45.4 4 7 7e-09 5.5e-06 26.6 3.7 1 23 337 360 337 360 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 MAZ-202 - 477 1.7e-20 72.2 45.4 5 7 4.6e-05 0.036 14.5 0.2 1 23 366 388 366 388 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 MAZ-202 - 477 1.7e-20 72.2 45.4 6 7 0.0048 3.7 8.2 0.4 2 23 393 413 392 413 0.91 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 MAZ-202 - 477 1.7e-20 72.2 45.4 7 7 1.4 1.1e+03 0.4 0.2 1 8 419 426 419 428 0.87 Zinc finger, C2H2 type zf-C2H2_jaz PF12171.8 27 MAZ-202 - 477 3.3e-08 33.6 25.1 1 7 2.5e-05 0.019 15.2 0.1 2 21 190 209 189 210 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 MAZ-202 - 477 3.3e-08 33.6 25.1 2 7 0.0071 5.5 7.4 1.3 2 24 279 301 278 302 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 MAZ-202 - 477 3.3e-08 33.6 25.1 3 7 0.19 1.5e+02 2.8 0.3 4 24 309 329 306 335 0.89 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 MAZ-202 - 477 3.3e-08 33.6 25.1 4 7 0.0011 0.86 10.0 0.2 2 22 337 357 336 358 0.91 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 MAZ-202 - 477 3.3e-08 33.6 25.1 5 7 0.01 7.8 6.9 0.0 2 20 366 384 365 385 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 MAZ-202 - 477 3.3e-08 33.6 25.1 6 7 1.1 8.5e+02 0.4 0.0 4 14 394 404 393 405 0.88 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 MAZ-202 - 477 3.3e-08 33.6 25.1 7 7 0.099 77 3.7 0.1 2 9 419 426 418 428 0.85 Zinc-finger double-stranded RNA-binding zf-C2H2_6 PF13912.6 27 MAZ-202 - 477 1e-07 31.7 40.2 1 7 0.00022 0.17 11.9 0.2 2 21 190 209 190 213 0.91 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 MAZ-202 - 477 1e-07 31.7 40.2 2 7 0.002 1.5 8.9 1.7 2 26 279 303 278 304 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 MAZ-202 - 477 1e-07 31.7 40.2 3 7 0.085 66 3.7 0.4 2 13 307 318 307 330 0.79 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 MAZ-202 - 477 1e-07 31.7 40.2 4 7 6.6e-05 0.052 13.6 2.7 2 26 337 361 337 362 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 MAZ-202 - 477 1e-07 31.7 40.2 5 7 0.00012 0.091 12.8 0.3 2 26 366 390 366 391 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 MAZ-202 - 477 1e-07 31.7 40.2 6 7 0.13 98 3.1 0.1 4 13 394 403 393 405 0.84 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 MAZ-202 - 477 1e-07 31.7 40.2 7 7 0.44 3.4e+02 1.4 1.0 1 9 418 426 418 427 0.92 C2H2-type zinc finger # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/MAZ-202.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/MAZ-202.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/MAZ-202.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/MAZ-202.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/MAZ-202.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:55:33 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-C2H2_4 PF13894.6 24 MAZ-203 - 454 3.5e-21 74.1 45.8 1 7 9.5e-05 0.077 13.9 0.1 1 23 167 189 167 190 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 MAZ-203 - 454 3.5e-21 74.1 45.8 2 7 9.4e-06 0.0076 17.0 2.4 1 23 256 278 256 279 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 MAZ-203 - 454 3.5e-21 74.1 45.8 3 7 4.3e-07 0.00035 21.2 1.4 1 23 284 306 284 307 0.97 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 MAZ-203 - 454 3.5e-21 74.1 45.8 4 7 2e-07 0.00016 22.2 3.4 1 24 314 337 314 337 0.97 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 MAZ-203 - 454 3.5e-21 74.1 45.8 5 7 1.6e-05 0.013 16.2 0.2 1 23 343 365 343 366 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 MAZ-203 - 454 3.5e-21 74.1 45.8 6 7 0.00073 0.59 11.1 0.5 2 23 370 390 369 391 0.86 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 MAZ-203 - 454 3.5e-21 74.1 45.8 7 7 3.2 2.6e+03 -0.2 0.8 1 8 396 403 396 409 0.85 C2H2-type zinc finger zf-H2C2_2 PF13465.6 26 MAZ-203 - 454 1.1e-20 73.0 49.1 1 8 0.014 11 6.6 1.0 10 26 162 178 158 178 0.82 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 MAZ-203 - 454 1.1e-20 73.0 49.1 2 8 0.0051 4.2 8.0 0.1 1 13 181 193 181 196 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 MAZ-203 - 454 1.1e-20 73.0 49.1 3 8 0.057 47 4.7 0.1 13 24 254 265 248 266 0.81 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 MAZ-203 - 454 1.1e-20 73.0 49.1 4 8 6.7e-09 5.5e-06 26.6 2.7 1 26 270 295 270 295 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 MAZ-203 - 454 1.1e-20 73.0 49.1 5 8 7e-07 0.00057 20.2 2.5 3 25 300 324 298 325 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 MAZ-203 - 454 1.1e-20 73.0 49.1 6 8 1.4e-07 0.00011 22.4 0.6 1 26 328 354 328 354 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 MAZ-203 - 454 1.1e-20 73.0 49.1 7 8 0.24 2e+02 2.7 0.6 2 22 358 376 357 380 0.73 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 MAZ-203 - 454 1.1e-20 73.0 49.1 8 8 0.00042 0.34 11.4 0.7 4 24 385 405 383 406 0.82 Zinc-finger double domain zf-C2H2 PF00096.26 23 MAZ-203 - 454 1.2e-20 72.8 45.4 1 7 5e-05 0.041 14.4 0.1 1 23 167 189 167 189 0.95 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 MAZ-203 - 454 1.2e-20 72.8 45.4 2 7 2.5e-06 0.002 18.5 2.8 1 23 256 278 256 278 0.94 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 MAZ-203 - 454 1.2e-20 72.8 45.4 3 7 1.9e-05 0.016 15.7 2.6 1 23 284 306 284 306 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 MAZ-203 - 454 1.2e-20 72.8 45.4 4 7 6.3e-09 5.1e-06 26.6 3.7 1 23 314 337 314 337 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 MAZ-203 - 454 1.2e-20 72.8 45.4 5 7 4.1e-05 0.034 14.6 0.2 1 23 343 365 343 365 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 MAZ-203 - 454 1.2e-20 72.8 45.4 6 7 0.0043 3.5 8.3 0.4 2 23 370 390 369 390 0.91 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 MAZ-203 - 454 1.2e-20 72.8 45.4 7 7 1.3 1.1e+03 0.4 0.2 1 8 396 403 396 405 0.87 Zinc finger, C2H2 type zf-C2H2_jaz PF12171.8 27 MAZ-203 - 454 2.2e-08 34.1 25.1 1 7 2.2e-05 0.018 15.3 0.1 2 21 167 186 166 187 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 MAZ-203 - 454 2.2e-08 34.1 25.1 2 7 0.0064 5.2 7.5 1.3 2 24 256 278 255 279 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 MAZ-203 - 454 2.2e-08 34.1 25.1 3 7 0.17 1.4e+02 2.9 0.3 4 24 286 306 283 312 0.89 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 MAZ-203 - 454 2.2e-08 34.1 25.1 4 7 0.001 0.81 10.0 0.2 2 22 314 334 313 335 0.91 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 MAZ-203 - 454 2.2e-08 34.1 25.1 5 7 0.009 7.4 7.0 0.0 2 20 343 361 342 362 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 MAZ-203 - 454 2.2e-08 34.1 25.1 6 7 0.99 8.1e+02 0.5 0.0 4 14 371 381 370 382 0.88 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 MAZ-203 - 454 2.2e-08 34.1 25.1 7 7 0.09 73 3.8 0.1 2 9 396 403 395 405 0.85 Zinc-finger double-stranded RNA-binding zf-C2H2_6 PF13912.6 27 MAZ-203 - 454 7.6e-08 32.2 40.2 1 7 0.0002 0.16 12.0 0.2 2 21 167 186 167 190 0.91 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 MAZ-203 - 454 7.6e-08 32.2 40.2 2 7 0.0018 1.4 9.0 1.7 2 26 256 280 255 281 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 MAZ-203 - 454 7.6e-08 32.2 40.2 3 7 0.077 63 3.7 0.4 2 13 284 295 284 307 0.79 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 MAZ-203 - 454 7.6e-08 32.2 40.2 4 7 6e-05 0.049 13.7 2.7 2 26 314 338 314 339 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 MAZ-203 - 454 7.6e-08 32.2 40.2 5 7 0.00011 0.086 12.9 0.3 2 26 343 367 343 368 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 MAZ-203 - 454 7.6e-08 32.2 40.2 6 7 0.11 93 3.2 0.1 4 13 371 380 370 382 0.84 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 MAZ-203 - 454 7.6e-08 32.2 40.2 7 7 0.4 3.2e+02 1.5 1.0 1 9 395 403 395 404 0.92 C2H2-type zinc finger # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/MAZ-203.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/MAZ-203.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/MAZ-203.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/MAZ-203.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/MAZ-203.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:55:34 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/MAZ-204.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/MAZ-204.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/MAZ-204.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/MAZ-204.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/MAZ-204.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:55:34 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/MAZ-205.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/MAZ-205.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/MAZ-205.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/MAZ-205.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/MAZ-205.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:55:34 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/MAZ-206.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/MAZ-206.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/MAZ-206.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/MAZ-206.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/MAZ-206.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:55:35 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/MAZ-207.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/MAZ-207.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/MAZ-207.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/MAZ-207.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/MAZ-207.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:55:35 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/MAZ-208.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/MAZ-208.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/MAZ-208.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/MAZ-208.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/MAZ-208.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:55:35 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/MAZ-209.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/MAZ-209.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/MAZ-209.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/MAZ-209.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/MAZ-209.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:55:36 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/MAZ-210.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/MAZ-210.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/MAZ-210.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/MAZ-210.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/MAZ-210.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:55:36 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-C2H2_4 PF13894.6 24 MAZ-211 - 170 3.8e-19 67.7 39.6 1 6 0.00032 0.16 12.9 0.9 6 23 2 19 1 20 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 MAZ-211 - 170 3.8e-19 67.7 39.6 2 6 1.9e-07 9.3e-05 22.9 1.4 1 23 25 47 25 48 0.97 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 MAZ-211 - 170 3.8e-19 67.7 39.6 3 6 8.7e-08 4.4e-05 24.0 3.4 1 24 55 78 55 78 0.97 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 MAZ-211 - 170 3.8e-19 67.7 39.6 4 6 7.1e-06 0.0036 18.0 0.2 1 23 84 106 84 107 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 MAZ-211 - 170 3.8e-19 67.7 39.6 5 6 0.00032 0.16 12.9 0.5 2 23 111 131 110 132 0.86 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 MAZ-211 - 170 3.8e-19 67.7 39.6 6 6 1.5 7.7e+02 1.4 1.0 1 8 137 144 137 149 0.80 C2H2-type zinc finger zf-H2C2_2 PF13465.6 26 MAZ-211 - 170 1.4e-18 66.3 39.9 1 5 2.9e-09 1.4e-06 28.4 2.7 1 26 11 36 11 36 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 MAZ-211 - 170 1.4e-18 66.3 39.9 2 5 3e-07 0.00015 22.0 2.5 3 25 41 65 39 66 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 MAZ-211 - 170 1.4e-18 66.3 39.9 3 5 5.9e-08 2.9e-05 24.3 0.6 1 26 69 95 69 95 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 MAZ-211 - 170 1.4e-18 66.3 39.9 4 5 0.11 56 4.4 0.6 2 22 99 117 98 121 0.73 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 MAZ-211 - 170 1.4e-18 66.3 39.9 5 5 0.00036 0.18 12.3 1.1 4 23 126 145 124 146 0.82 Zinc-finger double domain zf-C2H2 PF00096.26 23 MAZ-211 - 170 2.5e-18 65.4 41.5 1 6 2.9e-05 0.015 15.8 1.0 6 23 2 19 1 19 0.95 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 MAZ-211 - 170 2.5e-18 65.4 41.5 2 6 8.6e-06 0.0043 17.4 2.6 1 23 25 47 25 47 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 MAZ-211 - 170 2.5e-18 65.4 41.5 3 6 2.8e-09 1.4e-06 28.4 3.7 1 23 55 78 55 78 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 MAZ-211 - 170 2.5e-18 65.4 41.5 4 6 1.8e-05 0.0092 16.4 0.2 1 23 84 106 84 106 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 MAZ-211 - 170 2.5e-18 65.4 41.5 5 6 0.002 0.99 10.0 0.4 2 23 111 131 110 131 0.91 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 MAZ-211 - 170 2.5e-18 65.4 41.5 6 6 0.71 3.6e+02 1.9 1.3 1 10 137 146 137 148 0.81 Zinc finger, C2H2 type # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/MAZ-211.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/MAZ-211.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/MAZ-211.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/MAZ-211.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/MAZ-211.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:55:37 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-met PF12874.7 25 MAZ-212 - 94 4.5e-08 33.2 6.3 1 2 8e-07 0.0018 18.6 0.3 2 19 21 38 19 40 0.94 Zinc-finger of C2H2 type zf-met PF12874.7 25 MAZ-212 - 94 4.5e-08 33.2 6.3 2 2 2.7e-06 0.006 16.9 1.2 3 22 55 74 53 76 0.94 Zinc-finger of C2H2 type # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/MAZ-212.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/MAZ-212.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/MAZ-212.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/MAZ-212.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/MAZ-212.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:55:37 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/MAZ-213.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/MAZ-213.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/MAZ-213.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/MAZ-213.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/MAZ-213.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:55:37 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/MAZ-214.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/MAZ-214.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/MAZ-214.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/MAZ-214.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/MAZ-214.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:55:38 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/MAZ-215.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/MAZ-215.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/MAZ-215.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/MAZ-215.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/MAZ-215.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:55:38 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-C2H2_4 PF13894.6 24 MAZ-216 - 252 1.5e-19 69.0 41.1 1 6 5.6e-06 0.0036 18.0 2.4 1 23 55 77 55 78 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 MAZ-216 - 252 1.5e-19 69.0 41.1 2 6 2.5e-07 0.00016 22.2 1.2 1 23 83 105 83 106 0.97 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 MAZ-216 - 252 1.5e-19 69.0 41.1 3 6 1.2e-07 7.7e-05 23.2 3.4 1 24 112 135 112 135 0.97 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 MAZ-216 - 252 1.5e-19 69.0 41.1 4 6 9.7e-06 0.0062 17.3 0.2 1 23 141 163 141 164 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 MAZ-216 - 252 1.5e-19 69.0 41.1 5 6 0.00044 0.28 12.1 0.5 2 23 168 188 167 189 0.86 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 MAZ-216 - 252 1.5e-19 69.0 41.1 6 6 1.9 1.2e+03 0.8 0.7 1 8 194 201 194 208 0.85 C2H2-type zinc finger zf-C2H2 PF00096.26 23 MAZ-216 - 252 8e-19 67.0 41.1 1 6 1.5e-06 0.00097 19.5 2.8 1 23 55 77 55 77 0.94 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 MAZ-216 - 252 8e-19 67.0 41.1 2 6 1.2e-05 0.0074 16.7 2.6 1 23 83 105 83 105 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 MAZ-216 - 252 8e-19 67.0 41.1 3 6 3.8e-09 2.4e-06 27.7 3.7 1 23 112 135 112 135 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 MAZ-216 - 252 8e-19 67.0 41.1 4 6 2.5e-05 0.016 15.6 0.2 1 23 141 163 141 163 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 MAZ-216 - 252 8e-19 67.0 41.1 5 6 0.0026 1.7 9.3 0.4 2 23 168 188 167 188 0.91 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 MAZ-216 - 252 8e-19 67.0 41.1 6 6 0.85 5.4e+02 1.4 0.2 1 8 194 201 194 203 0.87 Zinc finger, C2H2 type zf-H2C2_2 PF13465.6 26 MAZ-216 - 252 3.9e-17 61.8 40.1 1 6 0.036 23 5.6 0.1 13 24 53 64 47 65 0.81 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 MAZ-216 - 252 3.9e-17 61.8 40.1 2 6 4e-09 2.6e-06 27.6 2.7 1 26 69 94 69 94 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 MAZ-216 - 252 3.9e-17 61.8 40.1 3 6 0.00083 0.53 10.8 5.1 3 25 99 122 97 123 0.81 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 MAZ-216 - 252 3.9e-17 61.8 40.1 4 6 8.1e-08 5.2e-05 23.5 0.6 1 26 126 152 126 152 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 MAZ-216 - 252 3.9e-17 61.8 40.1 5 6 0.15 95 3.7 0.6 2 22 156 174 155 178 0.73 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 MAZ-216 - 252 3.9e-17 61.8 40.1 6 6 0.00025 0.16 12.4 0.7 4 24 183 203 181 204 0.82 Zinc-finger double domain zf-C2H2_6 PF13912.6 27 MAZ-216 - 252 9.3e-07 28.7 35.7 1 6 0.0011 0.68 10.0 1.7 2 26 55 79 54 80 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 MAZ-216 - 252 9.3e-07 28.7 35.7 2 6 0.057 36 4.5 0.6 2 13 83 94 83 105 0.80 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 MAZ-216 - 252 9.3e-07 28.7 35.7 3 6 3.6e-05 0.023 14.7 2.7 2 26 112 136 112 137 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 MAZ-216 - 252 9.3e-07 28.7 35.7 4 6 6.3e-05 0.041 13.9 0.3 2 26 141 165 141 166 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 MAZ-216 - 252 9.3e-07 28.7 35.7 5 6 0.074 47 4.1 0.1 4 13 169 178 168 180 0.84 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 MAZ-216 - 252 9.3e-07 28.7 35.7 6 6 0.26 1.7e+02 2.4 1.0 1 9 193 201 193 202 0.92 C2H2-type zinc finger # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/MAZ-216.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/MAZ-216.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/MAZ-216.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/MAZ-216.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/MAZ-216.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:55:38 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-C2H2 PF00096.26 23 MTF1-201 - 753 1.9e-28 97.3 37.9 1 6 1.2e-07 0.00023 21.4 0.7 1 23 140 164 140 164 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 MTF1-201 - 753 1.9e-28 97.3 37.9 2 6 4.4e-06 0.0087 16.5 0.1 1 23 170 194 170 194 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 MTF1-201 - 753 1.9e-28 97.3 37.9 3 6 2e-06 0.004 17.5 0.2 1 23 200 224 200 224 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 MTF1-201 - 753 1.9e-28 97.3 37.9 4 6 5.6e-08 0.00011 22.4 1.0 1 23 229 253 229 253 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 MTF1-201 - 753 1.9e-28 97.3 37.9 5 6 7.1e-07 0.0014 18.9 3.8 1 23 259 283 259 283 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 MTF1-201 - 753 1.9e-28 97.3 37.9 6 6 4.1e-08 8.2e-05 22.9 1.3 1 23 289 313 289 313 0.95 Zinc finger, C2H2 type zf-H2C2_2 PF13465.6 26 MTF1-201 - 753 4.1e-26 90.2 43.1 1 7 0.38 7.7e+02 0.8 0.7 12 26 137 153 132 153 0.76 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 MTF1-201 - 753 4.1e-26 90.2 43.1 2 7 1.1e-05 0.022 15.2 0.3 1 26 156 183 156 183 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 MTF1-201 - 753 4.1e-26 90.2 43.1 3 7 2.1e-09 4.2e-06 26.9 0.2 1 26 186 213 186 213 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 MTF1-201 - 753 4.1e-26 90.2 43.1 4 7 5.1e-06 0.01 16.2 1.5 2 26 217 242 216 242 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 MTF1-201 - 753 4.1e-26 90.2 43.1 5 7 6.1e-11 1.2e-07 31.8 0.4 1 25 245 271 245 272 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 MTF1-201 - 753 4.1e-26 90.2 43.1 6 7 1.1e-08 2.1e-05 24.7 2.6 1 26 275 302 275 302 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 MTF1-201 - 753 4.1e-26 90.2 43.1 7 7 0.34 6.8e+02 1.0 0.5 1 12 305 316 305 320 0.84 Zinc-finger double domain zf-C2H2_4 PF13894.6 24 MTF1-201 - 753 2.8e-18 65.0 34.7 1 6 7.9e-06 0.016 16.0 0.4 1 23 140 164 140 165 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 MTF1-201 - 753 2.8e-18 65.0 34.7 2 6 6.5e-05 0.13 13.2 0.2 1 23 170 194 170 195 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 MTF1-201 - 753 2.8e-18 65.0 34.7 3 6 0.00025 0.51 11.3 0.3 1 23 200 224 200 225 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 MTF1-201 - 753 2.8e-18 65.0 34.7 4 6 1.1e-05 0.023 15.5 0.6 1 23 229 253 229 254 0.91 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 MTF1-201 - 753 2.8e-18 65.0 34.7 5 6 7.5e-05 0.15 13.0 2.8 1 23 259 283 259 284 0.97 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 MTF1-201 - 753 2.8e-18 65.0 34.7 6 6 3.5e-06 0.007 17.1 0.8 1 23 289 313 289 314 0.93 C2H2-type zinc finger zf-C2H2_8 PF15909.5 98 MTF1-201 - 753 1.9e-09 37.7 19.8 1 4 8.7e-07 0.0017 18.6 1.8 17 90 121 195 109 198 0.84 C2H2-type zinc ribbon zf-C2H2_8 PF15909.5 98 MTF1-201 - 753 1.9e-09 37.7 19.8 2 4 1.2e-06 0.0024 18.1 3.4 2 87 172 251 171 257 0.81 C2H2-type zinc ribbon zf-C2H2_8 PF15909.5 98 MTF1-201 - 753 1.9e-09 37.7 19.8 3 4 0.00035 0.69 10.3 4.7 7 70 207 262 201 279 0.61 C2H2-type zinc ribbon zf-C2H2_8 PF15909.5 98 MTF1-201 - 753 1.9e-09 37.7 19.8 4 4 6.2e-06 0.012 15.9 6.9 2 95 231 319 230 322 0.88 C2H2-type zinc ribbon # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/MTF1-201.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/MTF1-201.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/MTF1-201.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/MTF1-201.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/MTF1-201.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:55:39 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/MTF1-202.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/MTF1-202.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/MTF1-202.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/MTF1-202.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/MTF1-202.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:55:39 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 MYNN-201 - 610 2.4e-54 179.5 43.6 1 9 0.95 5.3e+02 1.3 0.0 17 25 304 312 269 313 0.78 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 MYNN-201 - 610 2.4e-54 179.5 43.6 2 9 6.8e-12 3.8e-09 36.6 0.9 1 25 316 340 316 341 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 MYNN-201 - 610 2.4e-54 179.5 43.6 3 9 1.1e-11 6.2e-09 35.9 0.7 2 25 345 368 344 369 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 MYNN-201 - 610 2.4e-54 179.5 43.6 4 9 9.6e-08 5.4e-05 23.4 0.7 2 25 373 397 372 398 0.89 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 MYNN-201 - 610 2.4e-54 179.5 43.6 5 9 3.5e-08 2e-05 24.8 0.2 1 25 401 425 401 426 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 MYNN-201 - 610 2.4e-54 179.5 43.6 6 9 3.7e-11 2.1e-08 34.2 0.4 2 25 430 453 429 453 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 MYNN-201 - 610 2.4e-54 179.5 43.6 7 9 6.9e-08 3.9e-05 23.9 0.1 2 24 458 480 457 482 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 MYNN-201 - 610 2.4e-54 179.5 43.6 8 9 2.3e-08 1.3e-05 25.4 0.2 2 25 486 509 485 510 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 MYNN-201 - 610 2.4e-54 179.5 43.6 9 9 1.4 7.9e+02 0.8 0.2 1 11 513 524 513 527 0.76 Zinc-finger double domain zf-C2H2 PF00096.26 23 MYNN-201 - 610 7.1e-38 127.0 55.8 1 8 1.7e-08 9.7e-06 25.8 0.7 3 23 304 324 303 324 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 MYNN-201 - 610 7.1e-38 127.0 55.8 2 8 1.5e-07 8.3e-05 22.8 4.4 1 23 330 352 330 352 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 MYNN-201 - 610 7.1e-38 127.0 55.8 3 8 0.0023 1.3 9.6 4.3 1 23 358 380 358 381 0.94 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 MYNN-201 - 610 7.1e-38 127.0 55.8 4 8 1.9e-07 0.0001 22.5 0.5 1 23 387 409 387 409 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 MYNN-201 - 610 7.1e-38 127.0 55.8 5 8 9.3e-07 0.00052 20.3 0.6 1 23 415 437 415 437 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 MYNN-201 - 610 7.1e-38 127.0 55.8 6 8 6e-07 0.00034 20.9 0.2 1 23 443 465 443 465 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 MYNN-201 - 610 7.1e-38 127.0 55.8 7 8 5.8e-08 3.2e-05 24.1 0.2 1 23 471 493 471 493 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 MYNN-201 - 610 7.1e-38 127.0 55.8 8 8 0.00012 0.065 13.7 0.6 1 23 499 522 499 522 0.95 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 MYNN-201 - 610 3.1e-31 105.3 53.3 1 8 3.5e-06 0.002 18.8 0.4 3 23 304 324 302 325 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 MYNN-201 - 610 3.1e-31 105.3 53.3 2 8 3.3e-06 0.0018 18.9 3.7 1 23 330 352 330 353 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 MYNN-201 - 610 3.1e-31 105.3 53.3 3 8 4.5e-05 0.025 15.4 4.6 1 24 358 381 358 381 0.99 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 MYNN-201 - 610 3.1e-31 105.3 53.3 4 8 1.7e-05 0.0097 16.7 0.5 1 23 387 409 387 410 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 MYNN-201 - 610 3.1e-31 105.3 53.3 5 8 4.4e-05 0.025 15.4 0.4 1 23 415 437 415 438 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 MYNN-201 - 610 3.1e-31 105.3 53.3 6 8 0.00024 0.13 13.1 0.3 1 23 443 465 443 466 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 MYNN-201 - 610 3.1e-31 105.3 53.3 7 8 5.4e-07 0.0003 21.4 0.2 1 23 471 493 471 494 0.97 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 MYNN-201 - 610 3.1e-31 105.3 53.3 8 8 1.4e-05 0.008 16.9 0.4 1 24 499 522 499 522 0.97 C2H2-type zinc finger BTB PF00651.31 111 MYNN-201 - 610 6e-25 87.6 0.1 1 1 2.4e-27 1.3e-24 86.5 0.1 1 107 14 115 14 118 0.95 BTB/POZ domain zf-C2H2_6 PF13912.6 27 MYNN-201 - 610 8.9e-13 47.9 47.4 1 8 7.2e-05 0.041 13.9 0.2 4 25 304 325 303 327 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 MYNN-201 - 610 8.9e-13 47.9 47.4 2 8 0.017 9.5 6.4 3.6 2 24 330 352 330 355 0.92 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 MYNN-201 - 610 8.9e-13 47.9 47.4 3 8 0.46 2.6e+02 1.8 1.3 2 11 358 367 358 381 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 MYNN-201 - 610 8.9e-13 47.9 47.4 4 8 0.00041 0.23 11.5 0.4 2 24 387 409 387 412 0.87 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 MYNN-201 - 610 8.9e-13 47.9 47.4 5 8 0.46 2.6e+02 1.8 0.1 2 11 415 424 415 437 0.88 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 MYNN-201 - 610 8.9e-13 47.9 47.4 6 8 3e-05 0.017 15.1 0.3 2 24 443 465 443 468 0.95 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 MYNN-201 - 610 8.9e-13 47.9 47.4 7 8 0.00018 0.1 12.7 0.4 2 24 471 493 471 496 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 MYNN-201 - 610 8.9e-13 47.9 47.4 8 8 0.00015 0.085 12.9 0.5 2 25 499 522 499 524 0.90 C2H2-type zinc finger zf-C2H2_jaz PF12171.8 27 MYNN-201 - 610 1.3e-12 47.6 28.0 1 8 2.6 1.5e+03 -0.3 0.1 6 22 23 40 22 40 0.76 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 MYNN-201 - 610 1.3e-12 47.6 28.0 2 8 0.00083 0.47 10.8 0.0 3 22 303 322 301 322 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 MYNN-201 - 610 1.3e-12 47.6 28.0 3 8 0.013 7.1 7.0 1.1 2 24 330 352 329 352 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 MYNN-201 - 610 1.3e-12 47.6 28.0 4 8 0.0038 2.1 8.7 0.4 2 11 358 367 357 370 0.90 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 MYNN-201 - 610 1.3e-12 47.6 28.0 5 8 0.00079 0.44 10.9 0.2 2 20 387 405 386 408 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 MYNN-201 - 610 1.3e-12 47.6 28.0 6 8 0.41 2.3e+02 2.2 0.0 2 20 443 461 442 463 0.83 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 MYNN-201 - 610 1.3e-12 47.6 28.0 7 8 1.5e-05 0.0083 16.4 0.1 2 24 471 493 470 493 0.95 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 MYNN-201 - 610 1.3e-12 47.6 28.0 8 8 0.056 31 5.0 0.4 2 21 499 518 498 522 0.91 Zinc-finger double-stranded RNA-binding zf-H2C2_5 PF13909.6 26 MYNN-201 - 610 3.5e-07 29.9 35.4 1 8 0.00023 0.13 12.0 0.2 14 26 315 326 312 326 0.90 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 MYNN-201 - 610 3.5e-07 29.9 35.4 2 8 0.012 6.5 6.6 0.3 14 26 343 354 340 354 0.90 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 MYNN-201 - 610 3.5e-07 29.9 35.4 3 8 0.021 12 5.8 2.6 1 26 358 382 358 382 0.96 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 MYNN-201 - 610 3.5e-07 29.9 35.4 4 8 0.00014 0.079 12.7 0.5 1 26 387 411 387 411 0.98 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 MYNN-201 - 610 3.5e-07 29.9 35.4 5 8 0.17 97 2.9 0.0 13 26 427 439 425 439 0.87 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 MYNN-201 - 610 3.5e-07 29.9 35.4 6 8 0.1 56 3.6 0.1 14 26 456 467 453 467 0.88 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 MYNN-201 - 610 3.5e-07 29.9 35.4 7 8 1.2 6.6e+02 0.2 0.1 14 26 484 495 482 495 0.87 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 MYNN-201 - 610 3.5e-07 29.9 35.4 8 8 0.036 20 5.0 0.2 12 26 510 524 501 524 0.90 C2H2-type zinc-finger domain zf-met PF12874.7 25 MYNN-201 - 610 3.5e-07 30.4 52.2 1 9 2.9 1.6e+03 -0.3 0.0 6 19 24 38 23 40 0.77 Zinc-finger of C2H2 type zf-met PF12874.7 25 MYNN-201 - 610 3.5e-07 30.4 52.2 2 9 0.0016 0.9 10.0 0.2 2 24 303 325 302 325 0.94 Zinc-finger of C2H2 type zf-met PF12874.7 25 MYNN-201 - 610 3.5e-07 30.4 52.2 3 9 0.15 84 3.8 2.9 1 21 330 350 330 353 0.90 Zinc-finger of C2H2 type zf-met PF12874.7 25 MYNN-201 - 610 3.5e-07 30.4 52.2 4 9 0.0093 5.2 7.6 1.9 1 19 358 376 358 380 0.80 Zinc-finger of C2H2 type zf-met PF12874.7 25 MYNN-201 - 610 3.5e-07 30.4 52.2 5 9 0.0001 0.057 13.8 1.0 1 23 387 407 387 409 0.89 Zinc-finger of C2H2 type zf-met PF12874.7 25 MYNN-201 - 610 3.5e-07 30.4 52.2 6 9 6.3 3.5e+03 -1.4 0.1 1 19 415 433 415 435 0.76 Zinc-finger of C2H2 type zf-met PF12874.7 25 MYNN-201 - 610 3.5e-07 30.4 52.2 7 9 0.066 37 4.9 0.6 1 25 443 465 443 465 0.95 Zinc-finger of C2H2 type zf-met PF12874.7 25 MYNN-201 - 610 3.5e-07 30.4 52.2 8 9 9.2e-06 0.0052 17.1 0.4 1 23 471 493 471 494 0.95 Zinc-finger of C2H2 type zf-met PF12874.7 25 MYNN-201 - 610 3.5e-07 30.4 52.2 9 9 0.069 39 4.8 0.6 1 19 499 517 499 522 0.89 Zinc-finger of C2H2 type # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/MYNN-201.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/MYNN-201.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/MYNN-201.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/MYNN-201.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/MYNN-201.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:55:40 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 MYNN-202 - 610 2.4e-54 179.5 43.6 1 9 0.95 5.3e+02 1.3 0.0 17 25 304 312 269 313 0.78 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 MYNN-202 - 610 2.4e-54 179.5 43.6 2 9 6.8e-12 3.8e-09 36.6 0.9 1 25 316 340 316 341 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 MYNN-202 - 610 2.4e-54 179.5 43.6 3 9 1.1e-11 6.2e-09 35.9 0.7 2 25 345 368 344 369 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 MYNN-202 - 610 2.4e-54 179.5 43.6 4 9 9.6e-08 5.4e-05 23.4 0.7 2 25 373 397 372 398 0.89 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 MYNN-202 - 610 2.4e-54 179.5 43.6 5 9 3.5e-08 2e-05 24.8 0.2 1 25 401 425 401 426 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 MYNN-202 - 610 2.4e-54 179.5 43.6 6 9 3.7e-11 2.1e-08 34.2 0.4 2 25 430 453 429 453 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 MYNN-202 - 610 2.4e-54 179.5 43.6 7 9 6.9e-08 3.9e-05 23.9 0.1 2 24 458 480 457 482 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 MYNN-202 - 610 2.4e-54 179.5 43.6 8 9 2.3e-08 1.3e-05 25.4 0.2 2 25 486 509 485 510 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 MYNN-202 - 610 2.4e-54 179.5 43.6 9 9 1.4 7.9e+02 0.8 0.2 1 11 513 524 513 527 0.76 Zinc-finger double domain zf-C2H2 PF00096.26 23 MYNN-202 - 610 7.1e-38 127.0 55.8 1 8 1.7e-08 9.7e-06 25.8 0.7 3 23 304 324 303 324 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 MYNN-202 - 610 7.1e-38 127.0 55.8 2 8 1.5e-07 8.3e-05 22.8 4.4 1 23 330 352 330 352 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 MYNN-202 - 610 7.1e-38 127.0 55.8 3 8 0.0023 1.3 9.6 4.3 1 23 358 380 358 381 0.94 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 MYNN-202 - 610 7.1e-38 127.0 55.8 4 8 1.9e-07 0.0001 22.5 0.5 1 23 387 409 387 409 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 MYNN-202 - 610 7.1e-38 127.0 55.8 5 8 9.3e-07 0.00052 20.3 0.6 1 23 415 437 415 437 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 MYNN-202 - 610 7.1e-38 127.0 55.8 6 8 6e-07 0.00034 20.9 0.2 1 23 443 465 443 465 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 MYNN-202 - 610 7.1e-38 127.0 55.8 7 8 5.8e-08 3.2e-05 24.1 0.2 1 23 471 493 471 493 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 MYNN-202 - 610 7.1e-38 127.0 55.8 8 8 0.00012 0.065 13.7 0.6 1 23 499 522 499 522 0.95 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 MYNN-202 - 610 3.1e-31 105.3 53.3 1 8 3.5e-06 0.002 18.8 0.4 3 23 304 324 302 325 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 MYNN-202 - 610 3.1e-31 105.3 53.3 2 8 3.3e-06 0.0018 18.9 3.7 1 23 330 352 330 353 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 MYNN-202 - 610 3.1e-31 105.3 53.3 3 8 4.5e-05 0.025 15.4 4.6 1 24 358 381 358 381 0.99 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 MYNN-202 - 610 3.1e-31 105.3 53.3 4 8 1.7e-05 0.0097 16.7 0.5 1 23 387 409 387 410 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 MYNN-202 - 610 3.1e-31 105.3 53.3 5 8 4.4e-05 0.025 15.4 0.4 1 23 415 437 415 438 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 MYNN-202 - 610 3.1e-31 105.3 53.3 6 8 0.00024 0.13 13.1 0.3 1 23 443 465 443 466 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 MYNN-202 - 610 3.1e-31 105.3 53.3 7 8 5.4e-07 0.0003 21.4 0.2 1 23 471 493 471 494 0.97 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 MYNN-202 - 610 3.1e-31 105.3 53.3 8 8 1.4e-05 0.008 16.9 0.4 1 24 499 522 499 522 0.97 C2H2-type zinc finger BTB PF00651.31 111 MYNN-202 - 610 6e-25 87.6 0.1 1 1 2.4e-27 1.3e-24 86.5 0.1 1 107 14 115 14 118 0.95 BTB/POZ domain zf-C2H2_6 PF13912.6 27 MYNN-202 - 610 8.9e-13 47.9 47.4 1 8 7.2e-05 0.041 13.9 0.2 4 25 304 325 303 327 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 MYNN-202 - 610 8.9e-13 47.9 47.4 2 8 0.017 9.5 6.4 3.6 2 24 330 352 330 355 0.92 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 MYNN-202 - 610 8.9e-13 47.9 47.4 3 8 0.46 2.6e+02 1.8 1.3 2 11 358 367 358 381 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 MYNN-202 - 610 8.9e-13 47.9 47.4 4 8 0.00041 0.23 11.5 0.4 2 24 387 409 387 412 0.87 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 MYNN-202 - 610 8.9e-13 47.9 47.4 5 8 0.46 2.6e+02 1.8 0.1 2 11 415 424 415 437 0.88 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 MYNN-202 - 610 8.9e-13 47.9 47.4 6 8 3e-05 0.017 15.1 0.3 2 24 443 465 443 468 0.95 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 MYNN-202 - 610 8.9e-13 47.9 47.4 7 8 0.00018 0.1 12.7 0.4 2 24 471 493 471 496 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 MYNN-202 - 610 8.9e-13 47.9 47.4 8 8 0.00015 0.085 12.9 0.5 2 25 499 522 499 524 0.90 C2H2-type zinc finger zf-C2H2_jaz PF12171.8 27 MYNN-202 - 610 1.3e-12 47.6 28.0 1 8 2.6 1.5e+03 -0.3 0.1 6 22 23 40 22 40 0.76 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 MYNN-202 - 610 1.3e-12 47.6 28.0 2 8 0.00083 0.47 10.8 0.0 3 22 303 322 301 322 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 MYNN-202 - 610 1.3e-12 47.6 28.0 3 8 0.013 7.1 7.0 1.1 2 24 330 352 329 352 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 MYNN-202 - 610 1.3e-12 47.6 28.0 4 8 0.0038 2.1 8.7 0.4 2 11 358 367 357 370 0.90 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 MYNN-202 - 610 1.3e-12 47.6 28.0 5 8 0.00079 0.44 10.9 0.2 2 20 387 405 386 408 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 MYNN-202 - 610 1.3e-12 47.6 28.0 6 8 0.41 2.3e+02 2.2 0.0 2 20 443 461 442 463 0.83 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 MYNN-202 - 610 1.3e-12 47.6 28.0 7 8 1.5e-05 0.0083 16.4 0.1 2 24 471 493 470 493 0.95 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 MYNN-202 - 610 1.3e-12 47.6 28.0 8 8 0.056 31 5.0 0.4 2 21 499 518 498 522 0.91 Zinc-finger double-stranded RNA-binding zf-H2C2_5 PF13909.6 26 MYNN-202 - 610 3.5e-07 29.9 35.4 1 8 0.00023 0.13 12.0 0.2 14 26 315 326 312 326 0.90 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 MYNN-202 - 610 3.5e-07 29.9 35.4 2 8 0.012 6.5 6.6 0.3 14 26 343 354 340 354 0.90 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 MYNN-202 - 610 3.5e-07 29.9 35.4 3 8 0.021 12 5.8 2.6 1 26 358 382 358 382 0.96 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 MYNN-202 - 610 3.5e-07 29.9 35.4 4 8 0.00014 0.079 12.7 0.5 1 26 387 411 387 411 0.98 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 MYNN-202 - 610 3.5e-07 29.9 35.4 5 8 0.17 97 2.9 0.0 13 26 427 439 425 439 0.87 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 MYNN-202 - 610 3.5e-07 29.9 35.4 6 8 0.1 56 3.6 0.1 14 26 456 467 453 467 0.88 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 MYNN-202 - 610 3.5e-07 29.9 35.4 7 8 1.2 6.6e+02 0.2 0.1 14 26 484 495 482 495 0.87 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 MYNN-202 - 610 3.5e-07 29.9 35.4 8 8 0.036 20 5.0 0.2 12 26 510 524 501 524 0.90 C2H2-type zinc-finger domain zf-met PF12874.7 25 MYNN-202 - 610 3.5e-07 30.4 52.2 1 9 2.9 1.6e+03 -0.3 0.0 6 19 24 38 23 40 0.77 Zinc-finger of C2H2 type zf-met PF12874.7 25 MYNN-202 - 610 3.5e-07 30.4 52.2 2 9 0.0016 0.9 10.0 0.2 2 24 303 325 302 325 0.94 Zinc-finger of C2H2 type zf-met PF12874.7 25 MYNN-202 - 610 3.5e-07 30.4 52.2 3 9 0.15 84 3.8 2.9 1 21 330 350 330 353 0.90 Zinc-finger of C2H2 type zf-met PF12874.7 25 MYNN-202 - 610 3.5e-07 30.4 52.2 4 9 0.0093 5.2 7.6 1.9 1 19 358 376 358 380 0.80 Zinc-finger of C2H2 type zf-met PF12874.7 25 MYNN-202 - 610 3.5e-07 30.4 52.2 5 9 0.0001 0.057 13.8 1.0 1 23 387 407 387 409 0.89 Zinc-finger of C2H2 type zf-met PF12874.7 25 MYNN-202 - 610 3.5e-07 30.4 52.2 6 9 6.3 3.5e+03 -1.4 0.1 1 19 415 433 415 435 0.76 Zinc-finger of C2H2 type zf-met PF12874.7 25 MYNN-202 - 610 3.5e-07 30.4 52.2 7 9 0.066 37 4.9 0.6 1 25 443 465 443 465 0.95 Zinc-finger of C2H2 type zf-met PF12874.7 25 MYNN-202 - 610 3.5e-07 30.4 52.2 8 9 9.2e-06 0.0052 17.1 0.4 1 23 471 493 471 494 0.95 Zinc-finger of C2H2 type zf-met PF12874.7 25 MYNN-202 - 610 3.5e-07 30.4 52.2 9 9 0.069 39 4.8 0.6 1 19 499 517 499 522 0.89 Zinc-finger of C2H2 type # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/MYNN-202.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/MYNN-202.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/MYNN-202.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/MYNN-202.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/MYNN-202.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:55:40 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 MYNN-203 - 581 4.5e-50 165.9 36.9 1 8 0.76 5e+02 1.4 0.0 17 25 304 312 269 313 0.78 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 MYNN-203 - 581 4.5e-50 165.9 36.9 2 8 5.4e-12 3.6e-09 36.6 0.9 1 25 316 340 316 341 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 MYNN-203 - 581 4.5e-50 165.9 36.9 3 8 8.9e-12 5.9e-09 36.0 0.7 2 25 345 368 344 369 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 MYNN-203 - 581 4.5e-50 165.9 36.9 4 8 7.7e-08 5.1e-05 23.5 0.7 2 25 373 397 372 398 0.89 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 MYNN-203 - 581 4.5e-50 165.9 36.9 5 8 2.8e-08 1.9e-05 24.9 0.2 1 25 401 425 401 426 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 MYNN-203 - 581 4.5e-50 165.9 36.9 6 8 2.9e-11 2e-08 34.3 0.4 2 25 430 453 429 453 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 MYNN-203 - 581 4.5e-50 165.9 36.9 7 8 5.5e-08 3.6e-05 24.0 0.1 2 24 458 480 457 482 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 MYNN-203 - 581 4.5e-50 165.9 36.9 8 8 0.0098 6.5 7.4 0.1 2 11 486 495 485 498 0.89 Zinc-finger double domain zf-C2H2 PF00096.26 23 MYNN-203 - 581 2.8e-35 118.8 48.8 1 7 1.4e-08 9.1e-06 25.8 0.7 3 23 304 324 303 324 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 MYNN-203 - 581 2.8e-35 118.8 48.8 2 7 1.2e-07 7.8e-05 22.9 4.4 1 23 330 352 330 352 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 MYNN-203 - 581 2.8e-35 118.8 48.8 3 7 0.0019 1.2 9.7 4.3 1 23 358 380 358 381 0.94 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 MYNN-203 - 581 2.8e-35 118.8 48.8 4 7 1.5e-07 9.8e-05 22.6 0.5 1 23 387 409 387 409 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 MYNN-203 - 581 2.8e-35 118.8 48.8 5 7 7.4e-07 0.00049 20.4 0.6 1 23 415 437 415 437 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 MYNN-203 - 581 2.8e-35 118.8 48.8 6 7 4.8e-07 0.00032 21.0 0.2 1 23 443 465 443 465 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 MYNN-203 - 581 2.8e-35 118.8 48.8 7 7 4.6e-08 3.1e-05 24.2 0.2 1 23 471 493 471 493 0.98 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 MYNN-203 - 581 2.1e-27 93.5 47.0 1 7 2.8e-06 0.0019 18.9 0.4 3 23 304 324 302 325 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 MYNN-203 - 581 2.1e-27 93.5 47.0 2 7 2.6e-06 0.0017 19.0 3.7 1 23 330 352 330 353 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 MYNN-203 - 581 2.1e-27 93.5 47.0 3 7 3.6e-05 0.024 15.5 4.6 1 24 358 381 358 381 0.99 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 MYNN-203 - 581 2.1e-27 93.5 47.0 4 7 1.4e-05 0.0091 16.8 0.5 1 23 387 409 387 410 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 MYNN-203 - 581 2.1e-27 93.5 47.0 5 7 3.5e-05 0.023 15.5 0.4 1 23 415 437 415 438 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 MYNN-203 - 581 2.1e-27 93.5 47.0 6 7 0.00019 0.12 13.2 0.3 1 23 443 465 443 466 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 MYNN-203 - 581 2.1e-27 93.5 47.0 7 7 4.3e-07 0.00029 21.4 0.2 1 23 471 493 471 494 0.97 C2H2-type zinc finger BTB PF00651.31 111 MYNN-203 - 581 5.5e-25 87.7 0.1 1 1 1.8e-27 1.2e-24 86.6 0.1 1 107 14 115 14 118 0.95 BTB/POZ domain zf-C2H2_jaz PF12171.8 27 MYNN-203 - 581 1.3e-12 47.7 21.5 1 7 2.1 1.4e+03 -0.3 0.1 6 22 23 40 22 40 0.76 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 MYNN-203 - 581 1.3e-12 47.7 21.5 2 7 0.00066 0.44 10.9 0.0 3 22 303 322 301 322 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 MYNN-203 - 581 1.3e-12 47.7 21.5 3 7 0.01 6.7 7.1 1.1 2 24 330 352 329 352 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 MYNN-203 - 581 1.3e-12 47.7 21.5 4 7 0.003 2 8.8 0.4 2 11 358 367 357 370 0.90 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 MYNN-203 - 581 1.3e-12 47.7 21.5 5 7 0.00063 0.42 11.0 0.2 2 20 387 405 386 408 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 MYNN-203 - 581 1.3e-12 47.7 21.5 6 7 0.33 2.2e+02 2.3 0.0 2 20 443 461 442 463 0.83 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 MYNN-203 - 581 1.3e-12 47.7 21.5 7 7 1.2e-05 0.0078 16.5 0.1 2 24 471 493 470 493 0.95 Zinc-finger double-stranded RNA-binding zf-C2H2_6 PF13912.6 27 MYNN-203 - 581 3.3e-10 39.7 40.9 1 7 5.8e-05 0.038 14.0 0.2 4 25 304 325 303 327 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 MYNN-203 - 581 3.3e-10 39.7 40.9 2 7 0.013 9 6.4 3.6 2 24 330 352 330 355 0.92 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 MYNN-203 - 581 3.3e-10 39.7 40.9 3 7 0.37 2.5e+02 1.8 1.3 2 11 358 367 358 381 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 MYNN-203 - 581 3.3e-10 39.7 40.9 4 7 0.00033 0.22 11.6 0.4 2 24 387 409 387 412 0.87 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 MYNN-203 - 581 3.3e-10 39.7 40.9 5 7 0.37 2.5e+02 1.8 0.1 2 11 415 424 415 437 0.88 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 MYNN-203 - 581 3.3e-10 39.7 40.9 6 7 2.4e-05 0.016 15.2 0.3 2 24 443 465 443 468 0.95 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 MYNN-203 - 581 3.3e-10 39.7 40.9 7 7 0.00019 0.12 12.4 0.4 2 24 471 493 471 495 0.96 C2H2-type zinc finger zf-met PF12874.7 25 MYNN-203 - 581 2.1e-07 31.1 45.2 1 8 2.3 1.5e+03 -0.2 0.0 6 19 24 38 23 40 0.77 Zinc-finger of C2H2 type zf-met PF12874.7 25 MYNN-203 - 581 2.1e-07 31.1 45.2 2 8 0.0013 0.85 10.1 0.2 2 24 303 325 302 325 0.94 Zinc-finger of C2H2 type zf-met PF12874.7 25 MYNN-203 - 581 2.1e-07 31.1 45.2 3 8 0.12 79 3.8 2.9 1 21 330 350 330 353 0.90 Zinc-finger of C2H2 type zf-met PF12874.7 25 MYNN-203 - 581 2.1e-07 31.1 45.2 4 8 0.0075 4.9 7.7 1.9 1 19 358 376 358 380 0.80 Zinc-finger of C2H2 type zf-met PF12874.7 25 MYNN-203 - 581 2.1e-07 31.1 45.2 5 8 8.1e-05 0.054 13.9 1.0 1 23 387 407 387 409 0.89 Zinc-finger of C2H2 type zf-met PF12874.7 25 MYNN-203 - 581 2.1e-07 31.1 45.2 6 8 5 3.3e+03 -1.3 0.1 1 19 415 433 415 435 0.76 Zinc-finger of C2H2 type zf-met PF12874.7 25 MYNN-203 - 581 2.1e-07 31.1 45.2 7 8 0.053 35 5.0 0.6 1 25 443 465 443 465 0.95 Zinc-finger of C2H2 type zf-met PF12874.7 25 MYNN-203 - 581 2.1e-07 31.1 45.2 8 8 7.4e-06 0.0049 17.2 0.4 1 23 471 493 471 494 0.95 Zinc-finger of C2H2 type zf-H2C2_5 PF13909.6 26 MYNN-203 - 581 6.8e-07 28.9 30.2 1 7 0.00019 0.12 12.1 0.2 14 26 315 326 312 326 0.90 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 MYNN-203 - 581 6.8e-07 28.9 30.2 2 7 0.0092 6.1 6.7 0.3 14 26 343 354 340 354 0.90 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 MYNN-203 - 581 6.8e-07 28.9 30.2 3 7 0.017 11 5.9 2.6 1 26 358 382 358 382 0.96 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 MYNN-203 - 581 6.8e-07 28.9 30.2 4 7 0.00011 0.075 12.8 0.5 1 26 387 411 387 411 0.98 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 MYNN-203 - 581 6.8e-07 28.9 30.2 5 7 0.14 91 2.9 0.0 13 26 427 439 425 439 0.87 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 MYNN-203 - 581 6.8e-07 28.9 30.2 6 7 0.08 53 3.7 0.1 14 26 456 467 453 467 0.88 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 MYNN-203 - 581 6.8e-07 28.9 30.2 7 7 0.94 6.2e+02 0.3 0.1 14 26 484 495 482 495 0.87 C2H2-type zinc-finger domain # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/MYNN-203.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/MYNN-203.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/MYNN-203.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/MYNN-203.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/MYNN-203.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:55:41 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 MYNN-204 - 227 3.6e-53 175.7 38.7 1 8 0.46 2.1e+02 2.6 0.1 17 25 31 39 7 40 0.87 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 MYNN-204 - 227 3.6e-53 175.7 38.7 2 8 2.4e-12 1.1e-09 38.3 0.9 1 26 43 68 43 68 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 MYNN-204 - 227 3.6e-53 175.7 38.7 3 8 4e-12 1.8e-09 37.6 0.7 2 25 72 95 71 96 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 MYNN-204 - 227 3.6e-53 175.7 38.7 4 8 3.4e-08 1.5e-05 25.2 0.7 2 25 100 124 99 125 0.89 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 MYNN-204 - 227 3.6e-53 175.7 38.7 5 8 1.3e-08 5.6e-06 26.5 0.2 1 25 128 152 128 153 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 MYNN-204 - 227 3.6e-53 175.7 38.7 6 8 1.3e-11 6e-09 35.9 0.4 2 25 157 180 156 180 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 MYNN-204 - 227 3.6e-53 175.7 38.7 7 8 2.5e-08 1.1e-05 25.6 0.1 2 25 185 208 184 209 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 MYNN-204 - 227 3.6e-53 175.7 38.7 8 8 0.0051 2.3 8.8 0.1 2 11 213 222 212 223 0.91 Zinc-finger double domain zf-C2H2 PF00096.26 23 MYNN-204 - 227 1.4e-38 129.2 48.8 1 7 6.3e-09 2.8e-06 27.5 0.7 3 23 31 51 30 51 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 MYNN-204 - 227 1.4e-38 129.2 48.8 2 7 5.3e-08 2.4e-05 24.5 4.4 1 23 57 79 57 79 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 MYNN-204 - 227 1.4e-38 129.2 48.8 3 7 0.00084 0.38 11.3 4.4 1 23 85 107 85 108 0.94 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 MYNN-204 - 227 1.4e-38 129.2 48.8 4 7 6.7e-08 3e-05 24.2 0.5 1 23 114 136 114 136 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 MYNN-204 - 227 1.4e-38 129.2 48.8 5 7 3.3e-07 0.00015 22.0 0.6 1 23 142 164 142 164 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 MYNN-204 - 227 1.4e-38 129.2 48.8 6 7 2.2e-07 9.7e-05 22.6 0.2 1 23 170 192 170 192 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 MYNN-204 - 227 1.4e-38 129.2 48.8 7 7 2.1e-08 9.4e-06 25.8 0.2 1 23 198 220 198 220 0.98 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 MYNN-204 - 227 9.8e-31 103.8 47.0 1 7 1.2e-06 0.00056 20.5 0.4 3 23 31 51 29 52 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 MYNN-204 - 227 9.8e-31 103.8 47.0 2 7 1.2e-06 0.00052 20.6 3.7 1 23 57 79 57 80 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 MYNN-204 - 227 9.8e-31 103.8 47.0 3 7 1.6e-05 0.0071 17.1 4.6 1 24 85 108 85 108 0.99 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 MYNN-204 - 227 9.8e-31 103.8 47.0 4 7 6.1e-06 0.0027 18.4 0.5 1 23 114 136 114 137 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 MYNN-204 - 227 9.8e-31 103.8 47.0 5 7 1.6e-05 0.007 17.1 0.4 1 23 142 164 142 165 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 MYNN-204 - 227 9.8e-31 103.8 47.0 6 7 8.4e-05 0.038 14.8 0.3 1 23 170 192 170 193 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 MYNN-204 - 227 9.8e-31 103.8 47.0 7 7 1.9e-07 8.6e-05 23.1 0.2 1 23 198 220 198 221 0.97 C2H2-type zinc finger zf-C2H2_jaz PF12171.8 27 MYNN-204 - 227 3.5e-15 55.8 20.8 1 6 0.00031 0.14 12.5 0.0 3 22 30 49 28 49 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 MYNN-204 - 227 3.5e-15 55.8 20.8 2 6 0.0046 2.1 8.7 1.1 2 24 57 79 56 79 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 MYNN-204 - 227 3.5e-15 55.8 20.8 3 6 0.0015 0.68 10.3 0.4 2 11 85 94 84 97 0.90 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 MYNN-204 - 227 3.5e-15 55.8 20.8 4 6 0.00033 0.15 12.4 0.4 2 20 114 132 113 136 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 MYNN-204 - 227 3.5e-15 55.8 20.8 5 6 0.15 66 4.0 0.1 2 20 170 188 169 192 0.84 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 MYNN-204 - 227 3.5e-15 55.8 20.8 6 6 5.4e-06 0.0024 18.1 0.1 2 24 198 220 197 220 0.95 Zinc-finger double-stranded RNA-binding zf-C2H2_6 PF13912.6 27 MYNN-204 - 227 9.3e-13 47.8 43.8 1 7 2.6e-05 0.012 15.6 0.2 4 25 31 52 30 54 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 MYNN-204 - 227 9.3e-13 47.8 43.8 2 7 0.0062 2.8 8.1 3.7 2 24 57 79 57 82 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 MYNN-204 - 227 9.3e-13 47.8 43.8 3 7 0.84 3.7e+02 1.3 3.4 2 11 85 94 85 109 0.92 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 MYNN-204 - 227 9.3e-13 47.8 43.8 4 7 0.00015 0.067 13.2 0.4 2 24 114 136 114 139 0.88 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 MYNN-204 - 227 9.3e-13 47.8 43.8 5 7 0.18 81 3.4 0.1 2 12 142 152 142 164 0.88 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 MYNN-204 - 227 9.3e-13 47.8 43.8 6 7 1.1e-05 0.0048 16.9 0.3 2 24 170 192 170 195 0.95 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 MYNN-204 - 227 9.3e-13 47.8 43.8 7 7 8.5e-05 0.038 14.0 0.4 2 24 198 220 198 222 0.96 C2H2-type zinc finger zf-met PF12874.7 25 MYNN-204 - 227 8e-11 42.0 42.5 1 7 0.00058 0.26 11.7 0.2 2 24 30 52 29 52 0.94 Zinc-finger of C2H2 type zf-met PF12874.7 25 MYNN-204 - 227 8e-11 42.0 42.5 2 7 0.055 25 5.5 2.9 1 21 57 77 57 80 0.90 Zinc-finger of C2H2 type zf-met PF12874.7 25 MYNN-204 - 227 8e-11 42.0 42.5 3 7 0.0036 1.6 9.2 1.9 1 19 85 103 85 107 0.80 Zinc-finger of C2H2 type zf-met PF12874.7 25 MYNN-204 - 227 8e-11 42.0 42.5 4 7 3.8e-05 0.017 15.5 1.0 1 23 114 134 114 136 0.89 Zinc-finger of C2H2 type zf-met PF12874.7 25 MYNN-204 - 227 8e-11 42.0 42.5 5 7 2.4 1.1e+03 0.2 0.1 1 19 142 160 142 162 0.77 Zinc-finger of C2H2 type zf-met PF12874.7 25 MYNN-204 - 227 8e-11 42.0 42.5 6 7 0.024 11 6.6 0.6 1 25 170 192 170 192 0.96 Zinc-finger of C2H2 type zf-met PF12874.7 25 MYNN-204 - 227 8e-11 42.0 42.5 7 7 3.4e-06 0.0015 18.8 0.4 1 23 198 220 198 221 0.95 Zinc-finger of C2H2 type zf-H2C2_5 PF13909.6 26 MYNN-204 - 227 8.8e-10 38.2 31.4 1 7 9.3e-05 0.041 13.6 0.2 14 26 42 53 39 53 0.90 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 MYNN-204 - 227 8.8e-10 38.2 31.4 2 7 0.0046 2.1 8.2 0.3 14 26 70 81 67 81 0.90 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 MYNN-204 - 227 8.8e-10 38.2 31.4 3 7 0.046 21 5.0 5.1 1 26 85 109 85 109 0.96 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 MYNN-204 - 227 8.8e-10 38.2 31.4 4 7 5.1e-05 0.023 14.5 0.5 1 26 114 138 114 138 0.98 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 MYNN-204 - 227 8.8e-10 38.2 31.4 5 7 0.066 30 4.5 0.0 13 26 154 166 151 166 0.88 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 MYNN-204 - 227 8.8e-10 38.2 31.4 6 7 0.04 18 5.2 0.1 13 26 182 194 180 194 0.88 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 MYNN-204 - 227 8.8e-10 38.2 31.4 7 7 0.47 2.1e+02 1.8 0.1 14 26 211 222 209 222 0.87 C2H2-type zinc-finger domain zf_UBZ PF18439.1 32 MYNN-204 - 227 2.9e-07 29.9 21.0 1 7 0.077 34 4.1 0.1 5 16 31 43 30 48 0.80 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 MYNN-204 - 227 2.9e-07 29.9 21.0 2 7 0.55 2.4e+02 1.4 0.7 3 13 57 67 55 75 0.79 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 MYNN-204 - 227 2.9e-07 29.9 21.0 3 7 0.64 2.9e+02 1.2 0.6 3 13 85 95 83 103 0.84 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 MYNN-204 - 227 2.9e-07 29.9 21.0 4 7 0.21 94 2.7 0.1 3 15 114 126 112 132 0.85 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 MYNN-204 - 227 2.9e-07 29.9 21.0 5 7 0.00026 0.12 12.0 0.1 3 15 142 154 140 160 0.84 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 MYNN-204 - 227 2.9e-07 29.9 21.0 6 7 0.00071 0.32 10.6 0.0 3 20 170 188 168 189 0.86 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 MYNN-204 - 227 2.9e-07 29.9 21.0 7 7 0.0069 3.1 7.5 0.0 3 20 198 216 196 216 0.88 Ubiquitin-Binding Zinc Finger # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/MYNN-204.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/MYNN-204.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/MYNN-204.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/MYNN-204.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/MYNN-204.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:55:41 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 MYNN-205 - 337 1.7e-56 186.3 44.6 1 9 0.67 3.4e+02 1.9 0.1 17 25 31 39 7 40 0.87 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 MYNN-205 - 337 1.7e-56 186.3 44.6 2 9 3.6e-12 1.8e-09 37.6 0.9 1 25 43 67 43 68 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 MYNN-205 - 337 1.7e-56 186.3 44.6 3 9 5.9e-12 3e-09 36.9 0.7 2 25 72 95 71 96 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 MYNN-205 - 337 1.7e-56 186.3 44.6 4 9 5.1e-08 2.6e-05 24.4 0.7 2 25 100 124 99 125 0.89 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 MYNN-205 - 337 1.7e-56 186.3 44.6 5 9 1.9e-08 9.6e-06 25.8 0.2 1 25 128 152 128 153 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 MYNN-205 - 337 1.7e-56 186.3 44.6 6 9 2e-11 1e-08 35.2 0.4 2 25 157 180 156 180 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 MYNN-205 - 337 1.7e-56 186.3 44.6 7 9 3.6e-08 1.9e-05 24.9 0.1 2 24 185 207 184 209 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 MYNN-205 - 337 1.7e-56 186.3 44.6 8 9 1.2e-08 6.2e-06 26.4 0.2 2 25 213 236 212 237 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 MYNN-205 - 337 1.7e-56 186.3 44.6 9 9 0.79 4e+02 1.7 0.2 1 11 240 251 240 254 0.76 Zinc-finger double domain zf-C2H2 PF00096.26 23 MYNN-205 - 337 3.5e-40 134.2 55.8 1 8 9.2e-09 4.7e-06 26.8 0.7 3 23 31 51 30 51 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 MYNN-205 - 337 3.5e-40 134.2 55.8 2 8 7.9e-08 4e-05 23.8 4.4 1 23 57 79 57 79 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 MYNN-205 - 337 3.5e-40 134.2 55.8 3 8 0.0012 0.64 10.6 4.4 1 23 85 107 85 108 0.94 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 MYNN-205 - 337 3.5e-40 134.2 55.8 4 8 9.9e-08 5.1e-05 23.5 0.5 1 23 114 136 114 136 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 MYNN-205 - 337 3.5e-40 134.2 55.8 5 8 4.9e-07 0.00025 21.3 0.6 1 23 142 164 142 164 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 MYNN-205 - 337 3.5e-40 134.2 55.8 6 8 3.2e-07 0.00016 21.9 0.2 1 23 170 192 170 192 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 MYNN-205 - 337 3.5e-40 134.2 55.8 7 8 3.1e-08 1.6e-05 25.1 0.2 1 23 198 220 198 220 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 MYNN-205 - 337 3.5e-40 134.2 55.8 8 8 6.2e-05 0.032 14.7 0.6 1 23 226 249 226 249 0.95 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 MYNN-205 - 337 1.5e-33 112.6 53.3 1 8 1.8e-06 0.00095 19.8 0.4 3 23 31 51 29 52 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 MYNN-205 - 337 1.5e-33 112.6 53.3 2 8 1.7e-06 0.00088 19.9 3.7 1 23 57 79 57 80 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 MYNN-205 - 337 1.5e-33 112.6 53.3 3 8 2.4e-05 0.012 16.4 4.6 1 24 85 108 85 108 0.99 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 MYNN-205 - 337 1.5e-33 112.6 53.3 4 8 9.1e-06 0.0046 17.7 0.5 1 23 114 136 114 137 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 MYNN-205 - 337 1.5e-33 112.6 53.3 5 8 2.3e-05 0.012 16.4 0.4 1 23 142 164 142 165 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 MYNN-205 - 337 1.5e-33 112.6 53.3 6 8 0.00012 0.064 14.1 0.3 1 23 170 192 170 193 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 MYNN-205 - 337 1.5e-33 112.6 53.3 7 8 2.8e-07 0.00015 22.3 0.2 1 23 198 220 198 221 0.97 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 MYNN-205 - 337 1.5e-33 112.6 53.3 8 8 7.5e-06 0.0038 17.9 0.4 1 24 226 249 226 249 0.97 C2H2-type zinc finger zf-C2H2_jaz PF12171.8 27 MYNN-205 - 337 9e-15 54.5 25.9 1 7 0.00045 0.23 11.8 0.0 3 22 30 49 28 49 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 MYNN-205 - 337 9e-15 54.5 25.9 2 7 0.0068 3.5 8.0 1.1 2 24 57 79 56 79 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 MYNN-205 - 337 9e-15 54.5 25.9 3 7 0.0021 1.1 9.7 0.4 2 11 85 94 84 97 0.90 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 MYNN-205 - 337 9e-15 54.5 25.9 4 7 0.00043 0.22 11.9 0.2 2 20 114 132 113 135 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 MYNN-205 - 337 9e-15 54.5 25.9 5 7 0.21 1.1e+02 3.3 0.1 2 20 170 188 169 192 0.84 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 MYNN-205 - 337 9e-15 54.5 25.9 6 7 7.9e-06 0.004 17.4 0.1 2 24 198 220 197 220 0.95 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 MYNN-205 - 337 9e-15 54.5 25.9 7 7 0.03 15 6.0 0.4 2 21 226 245 225 249 0.91 Zinc-finger double-stranded RNA-binding zf-C2H2_6 PF13912.6 27 MYNN-205 - 337 1.9e-14 53.2 49.5 1 8 3.9e-05 0.02 14.9 0.2 4 25 31 52 30 54 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 MYNN-205 - 337 1.9e-14 53.2 49.5 2 8 0.009 4.6 7.3 3.7 2 24 57 79 57 82 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 MYNN-205 - 337 1.9e-14 53.2 49.5 3 8 0.76 3.9e+02 1.2 2.8 2 11 85 94 85 109 0.92 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 MYNN-205 - 337 1.9e-14 53.2 49.5 4 8 0.00022 0.11 12.5 0.4 2 24 114 136 114 139 0.87 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 MYNN-205 - 337 1.9e-14 53.2 49.5 5 8 0.26 1.3e+02 2.7 0.1 2 11 142 151 142 164 0.88 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 MYNN-205 - 337 1.9e-14 53.2 49.5 6 8 1.6e-05 0.0081 16.1 0.3 2 24 170 192 170 195 0.95 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 MYNN-205 - 337 1.9e-14 53.2 49.5 7 8 9.5e-05 0.049 13.7 0.4 2 24 198 220 198 223 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 MYNN-205 - 337 1.9e-14 53.2 49.5 8 8 8.1e-05 0.041 13.9 0.5 2 25 226 249 226 251 0.90 C2H2-type zinc finger zf-met PF12874.7 25 MYNN-205 - 337 1.1e-09 38.3 49.5 1 8 0.00086 0.44 11.0 0.2 2 24 30 52 29 52 0.94 Zinc-finger of C2H2 type zf-met PF12874.7 25 MYNN-205 - 337 1.1e-09 38.3 49.5 2 8 0.08 41 4.7 2.9 1 21 57 77 57 80 0.90 Zinc-finger of C2H2 type zf-met PF12874.7 25 MYNN-205 - 337 1.1e-09 38.3 49.5 3 8 0.0051 2.6 8.6 1.9 1 19 85 103 85 107 0.80 Zinc-finger of C2H2 type zf-met PF12874.7 25 MYNN-205 - 337 1.1e-09 38.3 49.5 4 8 5.5e-05 0.028 14.8 1.0 1 23 114 134 114 136 0.89 Zinc-finger of C2H2 type zf-met PF12874.7 25 MYNN-205 - 337 1.1e-09 38.3 49.5 5 8 3.4 1.8e+03 -0.4 0.1 1 19 142 160 142 162 0.76 Zinc-finger of C2H2 type zf-met PF12874.7 25 MYNN-205 - 337 1.1e-09 38.3 49.5 6 8 0.036 18 5.9 0.6 1 25 170 192 170 192 0.95 Zinc-finger of C2H2 type zf-met PF12874.7 25 MYNN-205 - 337 1.1e-09 38.3 49.5 7 8 4.9e-06 0.0025 18.1 0.4 1 23 198 220 198 221 0.95 Zinc-finger of C2H2 type zf-met PF12874.7 25 MYNN-205 - 337 1.1e-09 38.3 49.5 8 8 0.037 19 5.8 0.6 1 19 226 244 226 249 0.89 Zinc-finger of C2H2 type zf-H2C2_5 PF13909.6 26 MYNN-205 - 337 1.1e-08 34.7 37.9 1 8 0.00013 0.066 13.0 0.2 14 26 42 53 39 53 0.90 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 MYNN-205 - 337 1.1e-08 34.7 37.9 2 8 0.0064 3.3 7.5 0.3 14 26 70 81 67 81 0.90 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 MYNN-205 - 337 1.1e-08 34.7 37.9 3 8 0.055 28 4.6 4.8 1 26 85 109 85 109 0.96 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 MYNN-205 - 337 1.1e-08 34.7 37.9 4 8 7.5e-05 0.039 13.7 0.5 1 26 114 138 114 138 0.98 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 MYNN-205 - 337 1.1e-08 34.7 37.9 5 8 0.096 49 3.8 0.0 13 26 154 166 152 166 0.87 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 MYNN-205 - 337 1.1e-08 34.7 37.9 6 8 0.056 29 4.5 0.1 13 26 182 194 180 194 0.88 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 MYNN-205 - 337 1.1e-08 34.7 37.9 7 8 0.66 3.4e+02 1.1 0.1 14 26 211 222 209 222 0.87 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 MYNN-205 - 337 1.1e-08 34.7 37.9 8 8 0.02 10 6.0 0.2 12 26 237 251 228 251 0.90 C2H2-type zinc-finger domain zf-C2H2_11 PF16622.5 29 MYNN-205 - 337 7.9e-07 28.7 38.2 1 8 1.3e-06 0.00065 19.4 0.5 7 26 31 50 27 52 0.92 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 MYNN-205 - 337 7.9e-07 28.7 38.2 2 8 0.16 80 3.1 1.4 7 24 59 76 57 78 0.86 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 MYNN-205 - 337 7.9e-07 28.7 38.2 3 8 0.84 4.3e+02 0.8 1.2 5 28 85 108 82 108 0.87 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 MYNN-205 - 337 7.9e-07 28.7 38.2 4 8 0.097 50 3.8 0.0 5 23 114 132 110 134 0.87 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 MYNN-205 - 337 7.9e-07 28.7 38.2 5 8 0.29 1.5e+02 2.3 0.2 7 24 144 161 142 163 0.85 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 MYNN-205 - 337 7.9e-07 28.7 38.2 6 8 0.055 28 4.6 0.2 7 23 172 188 170 190 0.89 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 MYNN-205 - 337 7.9e-07 28.7 38.2 7 8 0.0042 2.2 8.1 0.4 7 24 200 217 198 219 0.91 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 MYNN-205 - 337 7.9e-07 28.7 38.2 8 8 0.0032 1.6 8.5 0.1 7 28 228 249 226 249 0.92 zinc-finger C2H2-type # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/MYNN-205.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/MYNN-205.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/MYNN-205.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/MYNN-205.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/MYNN-205.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:55:42 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 MZF1-201 - 734 1.1e-79 259.5 65.9 1 14 0.15 82 3.9 0.1 17 25 358 366 357 367 0.88 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 MZF1-201 - 734 1.1e-79 259.5 65.9 2 14 3.8e-10 2.1e-07 31.0 0.2 1 25 370 394 370 395 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 MZF1-201 - 734 1.1e-79 259.5 65.9 3 14 4.3e-06 0.0024 18.2 0.2 1 25 398 422 398 423 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 MZF1-201 - 734 1.1e-79 259.5 65.9 4 14 3.4e-08 1.9e-05 24.9 0.2 2 25 427 450 426 451 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 MZF1-201 - 734 1.1e-79 259.5 65.9 5 14 0.0023 1.3 9.6 0.2 2 25 455 495 454 496 0.63 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 MZF1-201 - 734 1.1e-79 259.5 65.9 6 14 0.00027 0.15 12.5 0.0 4 25 502 523 500 524 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 MZF1-201 - 734 1.1e-79 259.5 65.9 7 14 3.9e-07 0.00022 21.5 0.1 3 25 529 551 528 552 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 MZF1-201 - 734 1.1e-79 259.5 65.9 8 14 4.5e-10 2.5e-07 30.8 0.1 1 25 555 579 555 580 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 MZF1-201 - 734 1.1e-79 259.5 65.9 9 14 5.5e-11 3.1e-08 33.7 0.2 2 25 584 607 583 608 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 MZF1-201 - 734 1.1e-79 259.5 65.9 10 14 3e-09 1.7e-06 28.2 1.3 2 25 612 635 611 636 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 MZF1-201 - 734 1.1e-79 259.5 65.9 11 14 9e-10 5.1e-07 29.8 0.2 2 25 640 663 639 664 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 MZF1-201 - 734 1.1e-79 259.5 65.9 12 14 1.1e-11 6.2e-09 35.9 0.2 1 25 667 691 667 692 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 MZF1-201 - 734 1.1e-79 259.5 65.9 13 14 7e-07 0.00039 20.7 1.8 2 24 696 718 695 720 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 MZF1-201 - 734 1.1e-79 259.5 65.9 14 14 6.7 3.8e+03 -1.4 0.1 2 10 724 732 723 734 0.81 Zinc-finger double domain zf-C2H2 PF00096.26 23 MZF1-201 - 734 1.3e-67 220.6 79.4 1 13 1.8e-08 1e-05 25.7 0.8 2 23 357 378 357 378 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 MZF1-201 - 734 1.3e-67 220.6 79.4 2 13 4.3e-09 2.4e-06 27.7 2.7 1 23 384 406 384 406 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 MZF1-201 - 734 1.3e-67 220.6 79.4 3 13 2.3e-06 0.0013 19.1 0.1 1 23 412 434 412 434 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 MZF1-201 - 734 1.3e-67 220.6 79.4 4 13 2.2e-08 1.3e-05 25.4 0.7 1 23 440 462 440 462 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 MZF1-201 - 734 1.3e-67 220.6 79.4 5 13 0.00027 0.15 12.6 0.1 1 23 485 507 485 507 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 MZF1-201 - 734 1.3e-67 220.6 79.4 6 13 0.00019 0.11 13.1 0.2 3 23 515 535 513 535 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 MZF1-201 - 734 1.3e-67 220.6 79.4 7 13 5.8e-08 3.2e-05 24.1 0.6 1 23 541 563 541 563 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 MZF1-201 - 734 1.3e-67 220.6 79.4 8 13 9.6e-07 0.00054 20.3 0.2 1 23 569 591 569 591 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 MZF1-201 - 734 1.3e-67 220.6 79.4 9 13 3.6e-07 0.0002 21.6 1.1 1 23 597 619 597 619 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 MZF1-201 - 734 1.3e-67 220.6 79.4 10 13 2e-05 0.011 16.1 0.5 1 23 625 647 625 647 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 MZF1-201 - 734 1.3e-67 220.6 79.4 11 13 1e-07 5.8e-05 23.3 1.0 1 23 653 675 653 675 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 MZF1-201 - 734 1.3e-67 220.6 79.4 12 13 4.4e-08 2.5e-05 24.5 0.3 1 23 681 703 681 703 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 MZF1-201 - 734 1.3e-67 220.6 79.4 13 13 4.1e-06 0.0023 18.3 2.0 1 23 709 731 709 731 0.97 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 MZF1-201 - 734 1.6e-40 134.2 80.1 1 13 4.8e-06 0.0027 18.4 0.6 2 23 357 378 357 379 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 MZF1-201 - 734 1.6e-40 134.2 80.1 2 13 1.7e-06 0.00095 19.8 2.6 1 23 384 406 384 407 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 MZF1-201 - 734 1.6e-40 134.2 80.1 3 13 0.0013 0.75 10.8 0.1 1 23 412 434 412 435 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 MZF1-201 - 734 1.6e-40 134.2 80.1 4 13 6.5e-05 0.036 14.9 0.4 1 23 440 462 440 463 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 MZF1-201 - 734 1.6e-40 134.2 80.1 5 13 0.0022 1.2 10.1 0.2 1 23 485 507 485 508 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 MZF1-201 - 734 1.6e-40 134.2 80.1 6 13 0.0021 1.1 10.2 0.3 2 23 514 535 513 536 0.89 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 MZF1-201 - 734 1.6e-40 134.2 80.1 7 13 0.0002 0.11 13.4 0.5 1 23 541 563 541 564 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 MZF1-201 - 734 1.6e-40 134.2 80.1 8 13 0.00031 0.18 12.8 0.2 1 23 569 591 569 592 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 MZF1-201 - 734 1.6e-40 134.2 80.1 9 13 3.2e-06 0.0018 19.0 0.9 1 23 597 619 597 620 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 MZF1-201 - 734 1.6e-40 134.2 80.1 10 13 0.0054 3 8.9 0.5 1 23 625 647 625 648 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 MZF1-201 - 734 1.6e-40 134.2 80.1 11 13 3.4e-05 0.019 15.8 0.8 1 23 653 675 653 676 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 MZF1-201 - 734 1.6e-40 134.2 80.1 12 13 4.2e-06 0.0024 18.6 0.3 1 23 681 703 681 704 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 MZF1-201 - 734 1.6e-40 134.2 80.1 13 13 8.3e-05 0.046 14.6 1.7 1 23 709 731 709 732 0.95 C2H2-type zinc finger SCAN PF02023.17 90 MZF1-201 - 734 7.1e-37 125.1 0.1 1 1 2.6e-39 1.4e-36 124.1 0.1 1 88 40 127 40 129 0.98 SCAN domain zf_UBZ PF18439.1 32 MZF1-201 - 734 2.8e-12 46.0 44.4 1 13 0.41 2.3e+02 1.5 0.0 5 16 358 370 356 375 0.77 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 MZF1-201 - 734 2.8e-12 46.0 44.4 2 13 0.0049 2.7 7.6 0.1 3 15 384 396 382 403 0.80 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 MZF1-201 - 734 2.8e-12 46.0 44.4 3 13 0.022 12 5.5 0.0 3 20 412 430 410 431 0.88 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 MZF1-201 - 734 2.8e-12 46.0 44.4 4 13 0.015 8.1 6.1 0.1 3 21 440 459 438 459 0.82 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 MZF1-201 - 734 2.8e-12 46.0 44.4 5 13 0.016 9.2 6.0 0.1 3 21 485 504 483 504 0.86 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 MZF1-201 - 734 2.8e-12 46.0 44.4 6 13 2.5 1.4e+03 -1.0 0.1 2 12 512 522 511 524 0.83 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 MZF1-201 - 734 2.8e-12 46.0 44.4 7 13 0.022 13 5.5 0.1 3 20 541 559 539 560 0.79 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 MZF1-201 - 734 2.8e-12 46.0 44.4 8 13 0.034 19 4.9 0.0 3 20 569 587 567 588 0.79 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 MZF1-201 - 734 2.8e-12 46.0 44.4 9 13 0.0022 1.2 8.8 0.1 3 20 597 615 595 616 0.82 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 MZF1-201 - 734 2.8e-12 46.0 44.4 10 13 0.39 2.2e+02 1.5 0.1 3 21 625 644 623 644 0.85 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 MZF1-201 - 734 2.8e-12 46.0 44.4 11 13 0.0024 1.4 8.6 0.2 3 20 653 671 651 672 0.88 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 MZF1-201 - 734 2.8e-12 46.0 44.4 12 13 0.0081 4.5 6.9 0.1 3 20 681 699 679 700 0.79 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 MZF1-201 - 734 2.8e-12 46.0 44.4 13 13 0.0078 4.4 7.0 0.3 3 21 709 728 707 728 0.88 Ubiquitin-Binding Zinc Finger Zn-ribbon_8 PF09723.10 40 MZF1-201 - 734 3.2e-10 39.9 55.7 1 11 0.0005 0.28 11.3 0.9 7 38 357 395 357 396 0.89 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 MZF1-201 - 734 3.2e-10 39.9 55.7 2 11 0.0028 1.5 9.0 1.8 6 36 384 421 383 427 0.80 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 MZF1-201 - 734 3.2e-10 39.9 55.7 3 11 0.026 15 5.8 3.7 6 37 412 450 411 452 0.80 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 MZF1-201 - 734 3.2e-10 39.9 55.7 4 11 0.014 8 6.7 0.2 6 17 440 457 439 468 0.71 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 MZF1-201 - 734 3.2e-10 39.9 55.7 5 11 0.37 2e+02 2.2 2.8 7 36 486 522 484 527 0.77 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 MZF1-201 - 734 3.2e-10 39.9 55.7 6 11 0.039 22 5.3 3.4 6 38 513 552 511 554 0.75 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 MZF1-201 - 734 3.2e-10 39.9 55.7 7 11 0.0073 4.1 7.6 3.4 6 38 541 580 539 581 0.83 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 MZF1-201 - 734 3.2e-10 39.9 55.7 8 11 9e-05 0.05 13.7 1.8 6 37 569 607 568 610 0.77 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 MZF1-201 - 734 3.2e-10 39.9 55.7 9 11 1.1e-05 0.0061 16.7 1.4 6 37 625 663 624 666 0.87 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 MZF1-201 - 734 3.2e-10 39.9 55.7 10 11 7.8e-05 0.043 13.9 3.5 6 38 653 692 653 694 0.86 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 MZF1-201 - 734 3.2e-10 39.9 55.7 11 11 0.016 9.2 6.5 0.2 6 17 709 720 708 731 0.80 Zinc ribbon domain zf-C2H2_6 PF13912.6 27 MZF1-201 - 734 1.9e-08 34.1 68.5 1 13 0.0015 0.87 9.7 0.2 3 12 357 366 357 378 0.84 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 MZF1-201 - 734 1.9e-08 34.1 68.5 2 13 0.0037 2 8.5 1.1 2 12 384 394 384 397 0.92 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 MZF1-201 - 734 1.9e-08 34.1 68.5 3 13 4.8 2.7e+03 -1.5 0.1 2 24 412 434 412 436 0.75 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 MZF1-201 - 734 1.9e-08 34.1 68.5 4 13 0.04 23 5.1 0.2 2 12 440 450 440 462 0.85 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 MZF1-201 - 734 1.9e-08 34.1 68.5 5 13 0.025 14 5.8 0.1 2 14 485 497 485 507 0.76 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 MZF1-201 - 734 1.9e-08 34.1 68.5 6 13 0.033 18 5.4 0.2 2 24 513 535 512 538 0.86 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 MZF1-201 - 734 1.9e-08 34.1 68.5 7 13 0.0071 4 7.6 0.3 2 24 541 563 541 566 0.91 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 MZF1-201 - 734 1.9e-08 34.1 68.5 8 13 0.041 23 5.1 0.1 2 12 569 579 569 592 0.82 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 MZF1-201 - 734 1.9e-08 34.1 68.5 9 13 0.068 38 4.4 0.3 2 23 597 618 597 622 0.73 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 MZF1-201 - 734 1.9e-08 34.1 68.5 10 13 5.1 2.9e+03 -1.6 0.6 2 20 625 643 625 648 0.73 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 MZF1-201 - 734 1.9e-08 34.1 68.5 11 13 0.0018 1 9.5 0.4 2 24 653 675 653 678 0.91 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 MZF1-201 - 734 1.9e-08 34.1 68.5 12 13 8.7e-05 0.049 13.7 0.2 2 27 681 706 681 706 0.95 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 MZF1-201 - 734 1.9e-08 34.1 68.5 13 13 0.09 51 4.0 1.2 2 25 709 732 709 734 0.85 C2H2-type zinc finger zf-C2H2_8 PF15909.5 98 MZF1-201 - 734 2e-08 34.4 35.8 1 6 0.012 6.5 7.1 0.8 41 86 359 403 342 411 0.85 C2H2-type zinc ribbon zf-C2H2_8 PF15909.5 98 MZF1-201 - 734 2e-08 34.4 35.8 2 6 0.013 7.3 7.0 0.3 38 91 414 464 402 475 0.80 C2H2-type zinc ribbon zf-C2H2_8 PF15909.5 98 MZF1-201 - 734 2e-08 34.4 35.8 3 6 0.0028 1.6 9.1 0.2 38 90 487 536 483 541 0.87 C2H2-type zinc ribbon zf-C2H2_8 PF15909.5 98 MZF1-201 - 734 2e-08 34.4 35.8 4 6 0.00011 0.064 13.6 0.9 37 90 542 592 535 600 0.87 C2H2-type zinc ribbon zf-C2H2_8 PF15909.5 98 MZF1-201 - 734 2e-08 34.4 35.8 5 6 0.00039 0.22 11.9 2.9 13 88 601 674 596 684 0.74 C2H2-type zinc ribbon zf-C2H2_8 PF15909.5 98 MZF1-201 - 734 2e-08 34.4 35.8 6 6 0.013 7.4 6.9 1.8 40 90 683 732 673 734 0.85 C2H2-type zinc ribbon ADK_lid PF05191.14 36 MZF1-201 - 734 3e-07 30.3 30.0 1 8 0.0096 5.4 7.1 0.2 22 35 356 369 352 369 0.91 Adenylate kinase, active site lid ADK_lid PF05191.14 36 MZF1-201 - 734 3e-07 30.3 30.0 2 8 0.00044 0.25 11.4 0.3 3 32 385 422 384 454 0.55 Adenylate kinase, active site lid ADK_lid PF05191.14 36 MZF1-201 - 734 3e-07 30.3 30.0 3 8 2.6 1.4e+03 -0.7 0.1 24 34 515 525 486 526 0.60 Adenylate kinase, active site lid ADK_lid PF05191.14 36 MZF1-201 - 734 3e-07 30.3 30.0 4 8 0.21 1.1e+02 2.8 0.3 4 35 515 554 513 554 0.61 Adenylate kinase, active site lid ADK_lid PF05191.14 36 MZF1-201 - 734 3e-07 30.3 30.0 5 8 0.011 5.9 7.0 0.8 4 35 543 582 532 610 0.65 Adenylate kinase, active site lid ADK_lid PF05191.14 36 MZF1-201 - 734 3e-07 30.3 30.0 6 8 0.43 2.4e+02 1.8 0.6 4 14 599 609 597 636 0.57 Adenylate kinase, active site lid ADK_lid PF05191.14 36 MZF1-201 - 734 3e-07 30.3 30.0 7 8 0.0018 1 9.4 0.9 4 35 655 694 653 694 0.74 Adenylate kinase, active site lid ADK_lid PF05191.14 36 MZF1-201 - 734 3e-07 30.3 30.0 8 8 0.082 46 4.1 0.0 4 13 711 720 709 729 0.81 Adenylate kinase, active site lid # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/MZF1-201.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/MZF1-201.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/MZF1-201.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/MZF1-201.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/MZF1-201.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:55:42 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- SCAN PF02023.17 90 MZF1-202 - 300 1.9e-37 126.9 0.1 1 1 1.9e-41 3.4e-37 126.2 0.1 1 88 81 168 81 170 0.98 SCAN domain # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/MZF1-202.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/MZF1-202.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/MZF1-202.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/MZF1-202.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/MZF1-202.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:55:42 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- SCAN PF02023.17 90 MZF1-203 - 290 1.8e-37 127.0 0.1 1 1 1.7e-41 3.1e-37 126.3 0.1 1 88 40 127 40 129 0.98 SCAN domain # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/MZF1-203.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/MZF1-203.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/MZF1-203.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/MZF1-203.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/MZF1-203.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:55:43 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- SCAN PF02023.17 90 MZF1-204 - 208 9.6e-38 127.9 0.1 1 1 8.6e-42 1.5e-37 127.2 0.1 1 88 40 127 40 129 0.98 SCAN domain # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/MZF1-204.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/MZF1-204.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/MZF1-204.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/MZF1-204.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/MZF1-204.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:55:43 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/MZF1-205.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/MZF1-205.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/MZF1-205.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/MZF1-205.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/MZF1-205.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:55:43 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 MZF1-206 - 734 1.1e-79 259.5 65.9 1 14 0.15 82 3.9 0.1 17 25 358 366 357 367 0.88 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 MZF1-206 - 734 1.1e-79 259.5 65.9 2 14 3.8e-10 2.1e-07 31.0 0.2 1 25 370 394 370 395 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 MZF1-206 - 734 1.1e-79 259.5 65.9 3 14 4.3e-06 0.0024 18.2 0.2 1 25 398 422 398 423 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 MZF1-206 - 734 1.1e-79 259.5 65.9 4 14 3.4e-08 1.9e-05 24.9 0.2 2 25 427 450 426 451 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 MZF1-206 - 734 1.1e-79 259.5 65.9 5 14 0.0023 1.3 9.6 0.2 2 25 455 495 454 496 0.63 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 MZF1-206 - 734 1.1e-79 259.5 65.9 6 14 0.00027 0.15 12.5 0.0 4 25 502 523 500 524 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 MZF1-206 - 734 1.1e-79 259.5 65.9 7 14 3.9e-07 0.00022 21.5 0.1 3 25 529 551 528 552 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 MZF1-206 - 734 1.1e-79 259.5 65.9 8 14 4.5e-10 2.5e-07 30.8 0.1 1 25 555 579 555 580 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 MZF1-206 - 734 1.1e-79 259.5 65.9 9 14 5.5e-11 3.1e-08 33.7 0.2 2 25 584 607 583 608 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 MZF1-206 - 734 1.1e-79 259.5 65.9 10 14 3e-09 1.7e-06 28.2 1.3 2 25 612 635 611 636 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 MZF1-206 - 734 1.1e-79 259.5 65.9 11 14 9e-10 5.1e-07 29.8 0.2 2 25 640 663 639 664 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 MZF1-206 - 734 1.1e-79 259.5 65.9 12 14 1.1e-11 6.2e-09 35.9 0.2 1 25 667 691 667 692 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 MZF1-206 - 734 1.1e-79 259.5 65.9 13 14 7e-07 0.00039 20.7 1.8 2 24 696 718 695 720 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 MZF1-206 - 734 1.1e-79 259.5 65.9 14 14 6.7 3.8e+03 -1.4 0.1 2 10 724 732 723 734 0.81 Zinc-finger double domain zf-C2H2 PF00096.26 23 MZF1-206 - 734 1.3e-67 220.6 79.4 1 13 1.8e-08 1e-05 25.7 0.8 2 23 357 378 357 378 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 MZF1-206 - 734 1.3e-67 220.6 79.4 2 13 4.3e-09 2.4e-06 27.7 2.7 1 23 384 406 384 406 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 MZF1-206 - 734 1.3e-67 220.6 79.4 3 13 2.3e-06 0.0013 19.1 0.1 1 23 412 434 412 434 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 MZF1-206 - 734 1.3e-67 220.6 79.4 4 13 2.2e-08 1.3e-05 25.4 0.7 1 23 440 462 440 462 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 MZF1-206 - 734 1.3e-67 220.6 79.4 5 13 0.00027 0.15 12.6 0.1 1 23 485 507 485 507 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 MZF1-206 - 734 1.3e-67 220.6 79.4 6 13 0.00019 0.11 13.1 0.2 3 23 515 535 513 535 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 MZF1-206 - 734 1.3e-67 220.6 79.4 7 13 5.8e-08 3.2e-05 24.1 0.6 1 23 541 563 541 563 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 MZF1-206 - 734 1.3e-67 220.6 79.4 8 13 9.6e-07 0.00054 20.3 0.2 1 23 569 591 569 591 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 MZF1-206 - 734 1.3e-67 220.6 79.4 9 13 3.6e-07 0.0002 21.6 1.1 1 23 597 619 597 619 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 MZF1-206 - 734 1.3e-67 220.6 79.4 10 13 2e-05 0.011 16.1 0.5 1 23 625 647 625 647 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 MZF1-206 - 734 1.3e-67 220.6 79.4 11 13 1e-07 5.8e-05 23.3 1.0 1 23 653 675 653 675 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 MZF1-206 - 734 1.3e-67 220.6 79.4 12 13 4.4e-08 2.5e-05 24.5 0.3 1 23 681 703 681 703 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 MZF1-206 - 734 1.3e-67 220.6 79.4 13 13 4.1e-06 0.0023 18.3 2.0 1 23 709 731 709 731 0.97 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 MZF1-206 - 734 1.6e-40 134.2 80.1 1 13 4.8e-06 0.0027 18.4 0.6 2 23 357 378 357 379 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 MZF1-206 - 734 1.6e-40 134.2 80.1 2 13 1.7e-06 0.00095 19.8 2.6 1 23 384 406 384 407 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 MZF1-206 - 734 1.6e-40 134.2 80.1 3 13 0.0013 0.75 10.8 0.1 1 23 412 434 412 435 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 MZF1-206 - 734 1.6e-40 134.2 80.1 4 13 6.5e-05 0.036 14.9 0.4 1 23 440 462 440 463 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 MZF1-206 - 734 1.6e-40 134.2 80.1 5 13 0.0022 1.2 10.1 0.2 1 23 485 507 485 508 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 MZF1-206 - 734 1.6e-40 134.2 80.1 6 13 0.0021 1.1 10.2 0.3 2 23 514 535 513 536 0.89 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 MZF1-206 - 734 1.6e-40 134.2 80.1 7 13 0.0002 0.11 13.4 0.5 1 23 541 563 541 564 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 MZF1-206 - 734 1.6e-40 134.2 80.1 8 13 0.00031 0.18 12.8 0.2 1 23 569 591 569 592 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 MZF1-206 - 734 1.6e-40 134.2 80.1 9 13 3.2e-06 0.0018 19.0 0.9 1 23 597 619 597 620 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 MZF1-206 - 734 1.6e-40 134.2 80.1 10 13 0.0054 3 8.9 0.5 1 23 625 647 625 648 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 MZF1-206 - 734 1.6e-40 134.2 80.1 11 13 3.4e-05 0.019 15.8 0.8 1 23 653 675 653 676 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 MZF1-206 - 734 1.6e-40 134.2 80.1 12 13 4.2e-06 0.0024 18.6 0.3 1 23 681 703 681 704 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 MZF1-206 - 734 1.6e-40 134.2 80.1 13 13 8.3e-05 0.046 14.6 1.7 1 23 709 731 709 732 0.95 C2H2-type zinc finger SCAN PF02023.17 90 MZF1-206 - 734 7.1e-37 125.1 0.1 1 1 2.6e-39 1.4e-36 124.1 0.1 1 88 40 127 40 129 0.98 SCAN domain zf_UBZ PF18439.1 32 MZF1-206 - 734 2.8e-12 46.0 44.4 1 13 0.41 2.3e+02 1.5 0.0 5 16 358 370 356 375 0.77 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 MZF1-206 - 734 2.8e-12 46.0 44.4 2 13 0.0049 2.7 7.6 0.1 3 15 384 396 382 403 0.80 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 MZF1-206 - 734 2.8e-12 46.0 44.4 3 13 0.022 12 5.5 0.0 3 20 412 430 410 431 0.88 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 MZF1-206 - 734 2.8e-12 46.0 44.4 4 13 0.015 8.1 6.1 0.1 3 21 440 459 438 459 0.82 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 MZF1-206 - 734 2.8e-12 46.0 44.4 5 13 0.016 9.2 6.0 0.1 3 21 485 504 483 504 0.86 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 MZF1-206 - 734 2.8e-12 46.0 44.4 6 13 2.5 1.4e+03 -1.0 0.1 2 12 512 522 511 524 0.83 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 MZF1-206 - 734 2.8e-12 46.0 44.4 7 13 0.022 13 5.5 0.1 3 20 541 559 539 560 0.79 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 MZF1-206 - 734 2.8e-12 46.0 44.4 8 13 0.034 19 4.9 0.0 3 20 569 587 567 588 0.79 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 MZF1-206 - 734 2.8e-12 46.0 44.4 9 13 0.0022 1.2 8.8 0.1 3 20 597 615 595 616 0.82 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 MZF1-206 - 734 2.8e-12 46.0 44.4 10 13 0.39 2.2e+02 1.5 0.1 3 21 625 644 623 644 0.85 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 MZF1-206 - 734 2.8e-12 46.0 44.4 11 13 0.0024 1.4 8.6 0.2 3 20 653 671 651 672 0.88 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 MZF1-206 - 734 2.8e-12 46.0 44.4 12 13 0.0081 4.5 6.9 0.1 3 20 681 699 679 700 0.79 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 MZF1-206 - 734 2.8e-12 46.0 44.4 13 13 0.0078 4.4 7.0 0.3 3 21 709 728 707 728 0.88 Ubiquitin-Binding Zinc Finger Zn-ribbon_8 PF09723.10 40 MZF1-206 - 734 3.2e-10 39.9 55.7 1 11 0.0005 0.28 11.3 0.9 7 38 357 395 357 396 0.89 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 MZF1-206 - 734 3.2e-10 39.9 55.7 2 11 0.0028 1.5 9.0 1.8 6 36 384 421 383 427 0.80 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 MZF1-206 - 734 3.2e-10 39.9 55.7 3 11 0.026 15 5.8 3.7 6 37 412 450 411 452 0.80 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 MZF1-206 - 734 3.2e-10 39.9 55.7 4 11 0.014 8 6.7 0.2 6 17 440 457 439 468 0.71 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 MZF1-206 - 734 3.2e-10 39.9 55.7 5 11 0.37 2e+02 2.2 2.8 7 36 486 522 484 527 0.77 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 MZF1-206 - 734 3.2e-10 39.9 55.7 6 11 0.039 22 5.3 3.4 6 38 513 552 511 554 0.75 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 MZF1-206 - 734 3.2e-10 39.9 55.7 7 11 0.0073 4.1 7.6 3.4 6 38 541 580 539 581 0.83 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 MZF1-206 - 734 3.2e-10 39.9 55.7 8 11 9e-05 0.05 13.7 1.8 6 37 569 607 568 610 0.77 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 MZF1-206 - 734 3.2e-10 39.9 55.7 9 11 1.1e-05 0.0061 16.7 1.4 6 37 625 663 624 666 0.87 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 MZF1-206 - 734 3.2e-10 39.9 55.7 10 11 7.8e-05 0.043 13.9 3.5 6 38 653 692 653 694 0.86 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 MZF1-206 - 734 3.2e-10 39.9 55.7 11 11 0.016 9.2 6.5 0.2 6 17 709 720 708 731 0.80 Zinc ribbon domain zf-C2H2_6 PF13912.6 27 MZF1-206 - 734 1.9e-08 34.1 68.5 1 13 0.0015 0.87 9.7 0.2 3 12 357 366 357 378 0.84 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 MZF1-206 - 734 1.9e-08 34.1 68.5 2 13 0.0037 2 8.5 1.1 2 12 384 394 384 397 0.92 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 MZF1-206 - 734 1.9e-08 34.1 68.5 3 13 4.8 2.7e+03 -1.5 0.1 2 24 412 434 412 436 0.75 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 MZF1-206 - 734 1.9e-08 34.1 68.5 4 13 0.04 23 5.1 0.2 2 12 440 450 440 462 0.85 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 MZF1-206 - 734 1.9e-08 34.1 68.5 5 13 0.025 14 5.8 0.1 2 14 485 497 485 507 0.76 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 MZF1-206 - 734 1.9e-08 34.1 68.5 6 13 0.033 18 5.4 0.2 2 24 513 535 512 538 0.86 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 MZF1-206 - 734 1.9e-08 34.1 68.5 7 13 0.0071 4 7.6 0.3 2 24 541 563 541 566 0.91 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 MZF1-206 - 734 1.9e-08 34.1 68.5 8 13 0.041 23 5.1 0.1 2 12 569 579 569 592 0.82 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 MZF1-206 - 734 1.9e-08 34.1 68.5 9 13 0.068 38 4.4 0.3 2 23 597 618 597 622 0.73 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 MZF1-206 - 734 1.9e-08 34.1 68.5 10 13 5.1 2.9e+03 -1.6 0.6 2 20 625 643 625 648 0.73 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 MZF1-206 - 734 1.9e-08 34.1 68.5 11 13 0.0018 1 9.5 0.4 2 24 653 675 653 678 0.91 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 MZF1-206 - 734 1.9e-08 34.1 68.5 12 13 8.7e-05 0.049 13.7 0.2 2 27 681 706 681 706 0.95 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 MZF1-206 - 734 1.9e-08 34.1 68.5 13 13 0.09 51 4.0 1.2 2 25 709 732 709 734 0.85 C2H2-type zinc finger zf-C2H2_8 PF15909.5 98 MZF1-206 - 734 2e-08 34.4 35.8 1 6 0.012 6.5 7.1 0.8 41 86 359 403 342 411 0.85 C2H2-type zinc ribbon zf-C2H2_8 PF15909.5 98 MZF1-206 - 734 2e-08 34.4 35.8 2 6 0.013 7.3 7.0 0.3 38 91 414 464 402 475 0.80 C2H2-type zinc ribbon zf-C2H2_8 PF15909.5 98 MZF1-206 - 734 2e-08 34.4 35.8 3 6 0.0028 1.6 9.1 0.2 38 90 487 536 483 541 0.87 C2H2-type zinc ribbon zf-C2H2_8 PF15909.5 98 MZF1-206 - 734 2e-08 34.4 35.8 4 6 0.00011 0.064 13.6 0.9 37 90 542 592 535 600 0.87 C2H2-type zinc ribbon zf-C2H2_8 PF15909.5 98 MZF1-206 - 734 2e-08 34.4 35.8 5 6 0.00039 0.22 11.9 2.9 13 88 601 674 596 684 0.74 C2H2-type zinc ribbon zf-C2H2_8 PF15909.5 98 MZF1-206 - 734 2e-08 34.4 35.8 6 6 0.013 7.4 6.9 1.8 40 90 683 732 673 734 0.85 C2H2-type zinc ribbon ADK_lid PF05191.14 36 MZF1-206 - 734 3e-07 30.3 30.0 1 8 0.0096 5.4 7.1 0.2 22 35 356 369 352 369 0.91 Adenylate kinase, active site lid ADK_lid PF05191.14 36 MZF1-206 - 734 3e-07 30.3 30.0 2 8 0.00044 0.25 11.4 0.3 3 32 385 422 384 454 0.55 Adenylate kinase, active site lid ADK_lid PF05191.14 36 MZF1-206 - 734 3e-07 30.3 30.0 3 8 2.6 1.4e+03 -0.7 0.1 24 34 515 525 486 526 0.60 Adenylate kinase, active site lid ADK_lid PF05191.14 36 MZF1-206 - 734 3e-07 30.3 30.0 4 8 0.21 1.1e+02 2.8 0.3 4 35 515 554 513 554 0.61 Adenylate kinase, active site lid ADK_lid PF05191.14 36 MZF1-206 - 734 3e-07 30.3 30.0 5 8 0.011 5.9 7.0 0.8 4 35 543 582 532 610 0.65 Adenylate kinase, active site lid ADK_lid PF05191.14 36 MZF1-206 - 734 3e-07 30.3 30.0 6 8 0.43 2.4e+02 1.8 0.6 4 14 599 609 597 636 0.57 Adenylate kinase, active site lid ADK_lid PF05191.14 36 MZF1-206 - 734 3e-07 30.3 30.0 7 8 0.0018 1 9.4 0.9 4 35 655 694 653 694 0.74 Adenylate kinase, active site lid ADK_lid PF05191.14 36 MZF1-206 - 734 3e-07 30.3 30.0 8 8 0.082 46 4.1 0.0 4 13 711 720 709 729 0.81 Adenylate kinase, active site lid # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/MZF1-206.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/MZF1-206.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/MZF1-206.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/MZF1-206.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/MZF1-206.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:55:44 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 MZF1-207 - 485 1.9e-82 268.3 66.1 1 14 0.1 52 4.5 0.1 17 25 109 117 108 118 0.88 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 MZF1-207 - 485 1.9e-82 268.3 66.1 2 14 2.6e-10 1.3e-07 31.7 0.2 1 25 121 145 121 146 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 MZF1-207 - 485 1.9e-82 268.3 66.1 3 14 2.9e-06 0.0015 18.9 0.2 1 25 149 173 149 174 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 MZF1-207 - 485 1.9e-82 268.3 66.1 4 14 2.3e-08 1.2e-05 25.5 0.2 2 25 178 201 177 202 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 MZF1-207 - 485 1.9e-82 268.3 66.1 5 14 0.0015 0.79 10.3 0.2 2 25 206 246 205 247 0.63 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 MZF1-207 - 485 1.9e-82 268.3 66.1 6 14 0.00018 0.093 13.2 0.0 4 25 253 274 251 275 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 MZF1-207 - 485 1.9e-82 268.3 66.1 7 14 2.6e-07 0.00013 22.2 0.1 3 25 280 302 279 303 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 MZF1-207 - 485 1.9e-82 268.3 66.1 8 14 3e-10 1.5e-07 31.5 0.1 1 25 306 330 306 331 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 MZF1-207 - 485 1.9e-82 268.3 66.1 9 14 3.7e-11 1.9e-08 34.4 0.2 2 25 335 358 334 359 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 MZF1-207 - 485 1.9e-82 268.3 66.1 10 14 2e-09 1e-06 28.9 1.3 2 25 363 386 362 387 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 MZF1-207 - 485 1.9e-82 268.3 66.1 11 14 6.1e-10 3.1e-07 30.5 0.2 2 25 391 414 390 415 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 MZF1-207 - 485 1.9e-82 268.3 66.1 12 14 7.4e-12 3.8e-09 36.6 0.2 1 25 418 442 418 443 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 MZF1-207 - 485 1.9e-82 268.3 66.1 13 14 4.7e-07 0.00024 21.4 1.8 2 24 447 469 446 471 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 MZF1-207 - 485 1.9e-82 268.3 66.1 14 14 4.6 2.4e+03 -0.7 0.1 2 10 475 483 474 485 0.81 Zinc-finger double domain zf-C2H2 PF00096.26 23 MZF1-207 - 485 2.8e-70 229.0 79.4 1 13 1.2e-08 6.2e-06 26.4 0.8 2 23 108 129 108 129 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 MZF1-207 - 485 2.8e-70 229.0 79.4 2 13 2.9e-09 1.5e-06 28.3 2.7 1 23 135 157 135 157 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 MZF1-207 - 485 2.8e-70 229.0 79.4 3 13 1.5e-06 0.00079 19.7 0.1 1 23 163 185 163 185 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 MZF1-207 - 485 2.8e-70 229.0 79.4 4 13 1.5e-08 7.7e-06 26.1 0.7 1 23 191 213 191 213 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 MZF1-207 - 485 2.8e-70 229.0 79.4 5 13 0.00018 0.094 13.2 0.1 1 23 236 258 236 258 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 MZF1-207 - 485 2.8e-70 229.0 79.4 6 13 0.00013 0.065 13.7 0.2 3 23 266 286 264 286 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 MZF1-207 - 485 2.8e-70 229.0 79.4 7 13 3.9e-08 2e-05 24.8 0.6 1 23 292 314 292 314 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 MZF1-207 - 485 2.8e-70 229.0 79.4 8 13 6.4e-07 0.00033 20.9 0.2 1 23 320 342 320 342 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 MZF1-207 - 485 2.8e-70 229.0 79.4 9 13 2.4e-07 0.00012 22.3 1.1 1 23 348 370 348 370 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 MZF1-207 - 485 2.8e-70 229.0 79.4 10 13 1.3e-05 0.0069 16.8 0.5 1 23 376 398 376 398 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 MZF1-207 - 485 2.8e-70 229.0 79.4 11 13 6.9e-08 3.5e-05 24.0 1.0 1 23 404 426 404 426 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 MZF1-207 - 485 2.8e-70 229.0 79.4 12 13 3e-08 1.5e-05 25.1 0.3 1 23 432 454 432 454 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 MZF1-207 - 485 2.8e-70 229.0 79.4 13 13 2.8e-06 0.0014 18.9 2.0 1 23 460 482 460 482 0.97 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 MZF1-207 - 485 3.3e-43 142.6 80.1 1 13 3.2e-06 0.0017 19.1 0.6 2 23 108 129 108 130 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 MZF1-207 - 485 3.3e-43 142.6 80.1 2 13 1.1e-06 0.00058 20.5 2.6 1 23 135 157 135 158 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 MZF1-207 - 485 3.3e-43 142.6 80.1 3 13 0.00089 0.46 11.5 0.1 1 23 163 185 163 186 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 MZF1-207 - 485 3.3e-43 142.6 80.1 4 13 4.3e-05 0.022 15.6 0.4 1 23 191 213 191 214 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 MZF1-207 - 485 3.3e-43 142.6 80.1 5 13 0.0015 0.75 10.8 0.2 1 23 236 258 236 259 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 MZF1-207 - 485 3.3e-43 142.6 80.1 6 13 0.0014 0.7 10.9 0.3 2 23 265 286 264 287 0.89 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 MZF1-207 - 485 3.3e-43 142.6 80.1 7 13 0.00013 0.069 14.0 0.5 1 23 292 314 292 315 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 MZF1-207 - 485 3.3e-43 142.6 80.1 8 13 0.00021 0.11 13.4 0.2 1 23 320 342 320 343 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 MZF1-207 - 485 3.3e-43 142.6 80.1 9 13 2.1e-06 0.0011 19.6 0.9 1 23 348 370 348 371 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 MZF1-207 - 485 3.3e-43 142.6 80.1 10 13 0.0036 1.9 9.6 0.5 1 23 376 398 376 399 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 MZF1-207 - 485 3.3e-43 142.6 80.1 11 13 2.3e-05 0.012 16.4 0.8 1 23 404 426 404 427 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 MZF1-207 - 485 3.3e-43 142.6 80.1 12 13 2.8e-06 0.0015 19.2 0.3 1 23 432 454 432 455 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 MZF1-207 - 485 3.3e-43 142.6 80.1 13 13 5.5e-05 0.028 15.2 1.7 1 23 460 482 460 483 0.95 C2H2-type zinc finger zf_UBZ PF18439.1 32 MZF1-207 - 485 1e-14 53.8 44.4 1 13 0.28 1.4e+02 2.1 0.0 5 16 109 121 107 126 0.77 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 MZF1-207 - 485 1e-14 53.8 44.4 2 13 0.0034 1.7 8.3 0.1 3 15 135 147 133 154 0.80 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 MZF1-207 - 485 1e-14 53.8 44.4 3 13 0.015 7.8 6.2 0.0 3 20 163 181 161 182 0.88 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 MZF1-207 - 485 1e-14 53.8 44.4 4 13 0.0099 5.1 6.8 0.1 3 21 191 210 189 210 0.82 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 MZF1-207 - 485 1e-14 53.8 44.4 5 13 0.011 5.7 6.6 0.1 3 21 236 255 234 255 0.86 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 MZF1-207 - 485 1e-14 53.8 44.4 6 13 1.7 8.7e+02 -0.4 0.1 2 12 263 273 262 276 0.84 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 MZF1-207 - 485 1e-14 53.8 44.4 7 13 0.015 7.8 6.2 0.1 3 20 292 310 290 311 0.79 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 MZF1-207 - 485 1e-14 53.8 44.4 8 13 0.023 12 5.6 0.0 3 20 320 338 318 339 0.79 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 MZF1-207 - 485 1e-14 53.8 44.4 9 13 0.0015 0.76 9.4 0.1 3 20 348 366 346 367 0.82 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 MZF1-207 - 485 1e-14 53.8 44.4 10 13 0.27 1.4e+02 2.2 0.1 3 21 376 395 374 395 0.85 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 MZF1-207 - 485 1e-14 53.8 44.4 11 13 0.0016 0.84 9.3 0.2 3 20 404 422 402 423 0.88 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 MZF1-207 - 485 1e-14 53.8 44.4 12 13 0.0055 2.8 7.6 0.1 3 20 432 450 430 451 0.79 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 MZF1-207 - 485 1e-14 53.8 44.4 13 13 0.0053 2.7 7.7 0.3 3 21 460 479 458 479 0.88 Ubiquitin-Binding Zinc Finger Zn-ribbon_8 PF09723.10 40 MZF1-207 - 485 1.5e-11 44.2 57.2 1 12 0.00035 0.18 12.0 1.0 7 38 108 146 108 147 0.89 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 MZF1-207 - 485 1.5e-11 44.2 57.2 2 12 0.0021 1.1 9.4 2.0 6 36 135 172 134 176 0.79 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 MZF1-207 - 485 1.5e-11 44.2 57.2 3 12 0.014 7.4 6.8 3.6 6 38 163 202 162 204 0.80 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 MZF1-207 - 485 1.5e-11 44.2 57.2 4 12 0.0097 5 7.3 0.2 6 17 191 208 190 219 0.71 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 MZF1-207 - 485 1.5e-11 44.2 57.2 5 12 1.5 7.6e+02 0.3 0.3 8 16 238 246 229 251 0.56 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 MZF1-207 - 485 1.5e-11 44.2 57.2 6 12 0.47 2.4e+02 1.9 3.7 7 36 237 273 235 277 0.78 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 MZF1-207 - 485 1.5e-11 44.2 57.2 7 12 0.029 15 5.8 3.6 6 38 264 303 262 305 0.75 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 MZF1-207 - 485 1.5e-11 44.2 57.2 8 12 0.0038 2 8.6 3.2 6 38 292 331 290 333 0.83 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 MZF1-207 - 485 1.5e-11 44.2 57.2 9 12 7.1e-05 0.036 14.2 2.1 6 37 320 358 319 361 0.77 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 MZF1-207 - 485 1.5e-11 44.2 57.2 10 12 7.2e-06 0.0037 17.3 1.5 6 37 376 414 375 417 0.87 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 MZF1-207 - 485 1.5e-11 44.2 57.2 11 12 5.1e-05 0.026 14.6 3.5 6 38 404 443 404 445 0.86 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 MZF1-207 - 485 1.5e-11 44.2 57.2 12 12 0.011 5.8 7.1 0.2 6 17 460 471 459 482 0.80 Zinc ribbon domain zf-C2H2_6 PF13912.6 27 MZF1-207 - 485 8.4e-11 41.6 68.9 1 13 0.0011 0.54 10.3 0.2 3 12 108 117 108 129 0.84 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 MZF1-207 - 485 8.4e-11 41.6 68.9 2 13 0.0029 1.5 8.9 1.3 2 12 135 145 135 149 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 MZF1-207 - 485 8.4e-11 41.6 68.9 3 13 3.3 1.7e+03 -0.8 0.1 2 24 163 185 163 187 0.76 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 MZF1-207 - 485 8.4e-11 41.6 68.9 4 13 0.028 14 5.8 0.2 2 12 191 201 191 213 0.85 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 MZF1-207 - 485 8.4e-11 41.6 68.9 5 13 0.017 8.7 6.5 0.1 2 14 236 248 236 258 0.76 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 MZF1-207 - 485 8.4e-11 41.6 68.9 6 13 0.022 11 6.1 0.2 2 24 264 286 263 289 0.87 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 MZF1-207 - 485 8.4e-11 41.6 68.9 7 13 0.0048 2.5 8.2 0.3 2 24 292 314 292 317 0.91 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 MZF1-207 - 485 8.4e-11 41.6 68.9 8 13 0.028 14 5.8 0.1 2 12 320 330 320 343 0.82 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 MZF1-207 - 485 8.4e-11 41.6 68.9 9 13 0.046 24 5.1 0.3 2 23 348 369 348 373 0.73 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 MZF1-207 - 485 8.4e-11 41.6 68.9 10 13 3.5 1.8e+03 -0.9 0.6 2 20 376 394 376 399 0.73 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 MZF1-207 - 485 8.4e-11 41.6 68.9 11 13 0.0012 0.62 10.1 0.4 2 24 404 426 404 429 0.91 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 MZF1-207 - 485 8.4e-11 41.6 68.9 12 13 5.8e-05 0.03 14.3 0.2 2 27 432 457 432 457 0.95 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 MZF1-207 - 485 8.4e-11 41.6 68.9 13 13 0.061 31 4.7 1.2 2 25 460 483 460 485 0.85 C2H2-type zinc finger zf-C2H2_8 PF15909.5 98 MZF1-207 - 485 1e-09 38.5 36.1 1 6 0.0072 3.7 7.9 0.8 41 86 110 154 93 162 0.85 C2H2-type zinc ribbon zf-C2H2_8 PF15909.5 98 MZF1-207 - 485 1e-09 38.5 36.1 2 6 0.0082 4.2 7.7 0.3 38 91 165 215 153 226 0.80 C2H2-type zinc ribbon zf-C2H2_8 PF15909.5 98 MZF1-207 - 485 1e-09 38.5 36.1 3 6 0.0018 0.94 9.8 0.2 38 90 238 287 234 291 0.87 C2H2-type zinc ribbon zf-C2H2_8 PF15909.5 98 MZF1-207 - 485 1e-09 38.5 36.1 4 6 7.5e-05 0.038 14.3 1.0 37 90 293 343 286 351 0.87 C2H2-type zinc ribbon zf-C2H2_8 PF15909.5 98 MZF1-207 - 485 1e-09 38.5 36.1 5 6 0.00022 0.11 12.8 2.7 12 88 351 425 345 432 0.75 C2H2-type zinc ribbon zf-C2H2_8 PF15909.5 98 MZF1-207 - 485 1e-09 38.5 36.1 6 6 0.0094 4.8 7.5 1.8 40 90 434 483 426 485 0.85 C2H2-type zinc ribbon ADK_lid PF05191.14 36 MZF1-207 - 485 5.1e-09 36.0 29.8 1 7 0.0066 3.4 7.7 0.2 22 35 107 120 103 120 0.91 Adenylate kinase, active site lid ADK_lid PF05191.14 36 MZF1-207 - 485 5.1e-09 36.0 29.8 2 7 0.00029 0.15 12.1 0.3 3 32 136 173 135 205 0.55 Adenylate kinase, active site lid ADK_lid PF05191.14 36 MZF1-207 - 485 5.1e-09 36.0 29.8 3 7 1.7 8.5e+02 0.1 0.1 24 34 266 276 236 277 0.60 Adenylate kinase, active site lid ADK_lid PF05191.14 36 MZF1-207 - 485 5.1e-09 36.0 29.8 4 7 0.01 5.3 7.1 0.9 4 35 294 333 266 333 0.80 Adenylate kinase, active site lid ADK_lid PF05191.14 36 MZF1-207 - 485 5.1e-09 36.0 29.8 5 7 0.056 29 4.8 1.7 4 34 322 360 320 387 0.81 Adenylate kinase, active site lid ADK_lid PF05191.14 36 MZF1-207 - 485 5.1e-09 36.0 29.8 6 7 0.0012 0.61 10.1 0.9 4 35 406 445 404 445 0.74 Adenylate kinase, active site lid ADK_lid PF05191.14 36 MZF1-207 - 485 5.1e-09 36.0 29.8 7 7 0.057 29 4.8 0.0 4 13 462 471 460 480 0.81 Adenylate kinase, active site lid zf-C2H2_jaz PF12171.8 27 MZF1-207 - 485 2.4e-08 34.0 17.4 1 11 0.025 13 6.2 0.1 4 22 109 127 108 127 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 MZF1-207 - 485 2.4e-08 34.0 17.4 2 11 0.0048 2.5 8.5 0.1 2 23 135 156 134 157 0.90 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 MZF1-207 - 485 2.4e-08 34.0 17.4 3 11 2.6 1.3e+03 -0.2 0.1 2 21 191 210 190 211 0.84 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 MZF1-207 - 485 2.4e-08 34.0 17.4 4 11 0.15 76 3.8 0.0 2 21 236 255 235 256 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 MZF1-207 - 485 2.4e-08 34.0 17.4 5 11 0.13 65 4.0 0.0 4 21 266 283 263 284 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 MZF1-207 - 485 2.4e-08 34.0 17.4 6 11 6 3.1e+03 -1.4 0.0 2 21 292 311 291 312 0.79 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 MZF1-207 - 485 2.4e-08 34.0 17.4 7 11 0.58 3e+02 1.9 0.0 2 21 320 339 319 340 0.79 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 MZF1-207 - 485 2.4e-08 34.0 17.4 8 11 4.2 2.1e+03 -0.9 0.1 2 23 348 369 347 370 0.68 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 MZF1-207 - 485 2.4e-08 34.0 17.4 9 11 0.91 4.7e+02 1.3 0.1 2 21 404 423 403 424 0.87 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 MZF1-207 - 485 2.4e-08 34.0 17.4 10 11 0.037 19 5.7 0.0 2 24 432 454 431 455 0.90 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 MZF1-207 - 485 2.4e-08 34.0 17.4 11 11 0.17 87 3.6 0.2 2 22 460 480 459 480 0.89 Zinc-finger double-stranded RNA-binding zf_C2H2_ZHX PF18387.1 53 MZF1-207 - 485 1.3e-07 31.1 45.9 1 12 0.048 25 4.6 0.3 5 23 135 153 131 158 0.88 Zinc-fingers and homeoboxes C2H2 finger domain zf_C2H2_ZHX PF18387.1 53 MZF1-207 - 485 1.3e-07 31.1 45.9 2 12 0.0084 4.3 7.0 0.0 5 34 163 191 159 192 0.90 Zinc-fingers and homeoboxes C2H2 finger domain zf_C2H2_ZHX PF18387.1 53 MZF1-207 - 485 1.3e-07 31.1 45.9 3 12 0.081 42 3.9 0.1 5 23 191 209 188 214 0.89 Zinc-fingers and homeoboxes C2H2 finger domain zf_C2H2_ZHX PF18387.1 53 MZF1-207 - 485 1.3e-07 31.1 45.9 4 12 0.21 1.1e+02 2.6 0.2 5 34 236 264 234 264 0.89 Zinc-fingers and homeoboxes C2H2 finger domain zf_C2H2_ZHX PF18387.1 53 MZF1-207 - 485 1.3e-07 31.1 45.9 5 12 0.02 10 5.9 0.1 2 33 261 291 260 293 0.86 Zinc-fingers and homeoboxes C2H2 finger domain zf_C2H2_ZHX PF18387.1 53 MZF1-207 - 485 1.3e-07 31.1 45.9 6 12 0.0015 0.78 9.4 0.1 5 32 292 318 289 320 0.90 Zinc-fingers and homeoboxes C2H2 finger domain zf_C2H2_ZHX PF18387.1 53 MZF1-207 - 485 1.3e-07 31.1 45.9 7 12 0.0018 0.95 9.2 0.3 5 34 320 348 318 350 0.93 Zinc-fingers and homeoboxes C2H2 finger domain zf_C2H2_ZHX PF18387.1 53 MZF1-207 - 485 1.3e-07 31.1 45.9 8 12 0.26 1.4e+02 2.3 0.1 5 32 348 374 345 376 0.89 Zinc-fingers and homeoboxes C2H2 finger domain zf_C2H2_ZHX PF18387.1 53 MZF1-207 - 485 1.3e-07 31.1 45.9 9 12 0.018 9.3 6.0 0.1 5 33 376 403 372 405 0.90 Zinc-fingers and homeoboxes C2H2 finger domain zf_C2H2_ZHX PF18387.1 53 MZF1-207 - 485 1.3e-07 31.1 45.9 10 12 0.00074 0.38 10.4 0.2 5 31 404 429 401 432 0.91 Zinc-fingers and homeoboxes C2H2 finger domain zf_C2H2_ZHX PF18387.1 53 MZF1-207 - 485 1.3e-07 31.1 45.9 11 12 0.37 1.9e+02 1.8 0.0 5 23 432 450 429 460 0.86 Zinc-fingers and homeoboxes C2H2 finger domain zf_C2H2_ZHX PF18387.1 53 MZF1-207 - 485 1.3e-07 31.1 45.9 12 12 0.31 1.6e+02 2.0 0.2 5 30 460 484 456 485 0.85 Zinc-fingers and homeoboxes C2H2 finger domain C1_1 PF00130.22 53 MZF1-207 - 485 1.5e-07 31.2 28.2 1 9 0.0076 3.9 7.4 0.3 12 37 107 143 103 149 0.81 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 MZF1-207 - 485 1.5e-07 31.2 28.2 2 9 0.0024 1.3 9.0 0.1 1 38 153 200 153 203 0.86 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 MZF1-207 - 485 1.5e-07 31.2 28.2 3 9 0.075 38 4.3 0.2 14 37 238 272 234 276 0.81 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 MZF1-207 - 485 1.5e-07 31.2 28.2 4 9 0.026 13 5.7 0.4 4 38 257 301 254 304 0.78 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 MZF1-207 - 485 1.5e-07 31.2 28.2 5 9 0.022 11 6.0 0.6 9 37 289 328 281 332 0.78 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 MZF1-207 - 485 1.5e-07 31.2 28.2 6 9 0.046 24 4.9 0.4 9 38 317 357 309 360 0.77 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 MZF1-207 - 485 1.5e-07 31.2 28.2 7 9 0.081 41 4.2 0.3 8 36 344 383 338 387 0.78 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 MZF1-207 - 485 1.5e-07 31.2 28.2 8 9 1.3 6.7e+02 0.3 0.1 9 22 401 414 394 424 0.70 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 MZF1-207 - 485 1.5e-07 31.2 28.2 9 9 0.00015 0.078 12.9 0.1 9 40 429 471 421 473 0.86 Phorbol esters/diacylglycerol binding domain (C1 domain) zinc_ribbon_15 PF17032.5 86 MZF1-207 - 485 4.6e-07 30.5 29.2 1 8 0.023 12 6.8 0.3 39 77 108 146 105 150 0.87 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 MZF1-207 - 485 4.6e-07 30.5 29.2 2 8 0.016 8.3 7.2 1.2 35 74 160 199 126 206 0.52 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 MZF1-207 - 485 4.6e-07 30.5 29.2 3 8 0.12 62 4.4 1.5 31 78 257 304 235 310 0.82 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 MZF1-207 - 485 4.6e-07 30.5 29.2 4 8 0.011 5.8 7.7 0.3 32 75 286 329 277 333 0.84 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 MZF1-207 - 485 4.6e-07 30.5 29.2 5 8 0.0031 1.6 9.5 0.2 32 78 314 360 308 364 0.87 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 MZF1-207 - 485 4.6e-07 30.5 29.2 6 8 0.0039 2 9.2 1.2 30 74 340 384 337 419 0.84 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 MZF1-207 - 485 4.6e-07 30.5 29.2 7 8 0.0029 1.5 9.6 0.3 32 76 398 442 393 446 0.85 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 MZF1-207 - 485 4.6e-07 30.5 29.2 8 8 0.0011 0.56 11.0 2.4 31 79 425 473 404 478 0.84 zinc-ribbon family # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/MZF1-207.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/MZF1-207.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/MZF1-207.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/MZF1-207.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/MZF1-207.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:55:45 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- SCAN PF02023.17 90 MZF1-208 - 249 1.5e-37 127.3 0.1 1 1 1.3e-41 2.3e-37 126.7 0.1 1 88 81 168 81 170 0.98 SCAN domain # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/MZF1-208.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/MZF1-208.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/MZF1-208.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/MZF1-208.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/MZF1-208.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:55:45 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-C2H2 PF00096.26 23 OSR2-201 - 312 6.2e-24 83.1 47.7 1 5 1.3e-06 0.00076 19.8 3.3 1 23 172 194 172 194 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 OSR2-201 - 312 6.2e-24 83.1 47.7 2 5 2.5e-07 0.00015 22.0 4.5 1 23 200 222 200 222 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 OSR2-201 - 312 6.2e-24 83.1 47.7 3 5 6.6e-06 0.0039 17.6 2.0 1 23 228 250 228 250 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 OSR2-201 - 312 6.2e-24 83.1 47.7 4 5 8.2e-09 4.9e-06 26.7 3.3 1 23 256 278 256 278 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 OSR2-201 - 312 6.2e-24 83.1 47.7 5 5 3.7e-07 0.00022 21.5 3.4 1 23 284 306 284 306 0.97 Zinc finger, C2H2 type zf-H2C2_2 PF13465.6 26 OSR2-201 - 312 2.6e-22 78.2 39.7 1 6 0.36 2.2e+02 2.5 2.3 12 26 169 183 166 183 0.82 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 OSR2-201 - 312 2.6e-22 78.2 39.7 2 6 6.8e-09 4.1e-06 27.0 0.8 2 25 187 210 186 211 0.90 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 OSR2-201 - 312 2.6e-22 78.2 39.7 3 6 6.6e-08 4e-05 23.9 3.3 1 24 214 237 214 237 0.97 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 OSR2-201 - 312 2.6e-22 78.2 39.7 4 6 3.2e-07 0.00019 21.7 1.0 5 25 246 266 243 267 0.90 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 OSR2-201 - 312 2.6e-22 78.2 39.7 5 6 2.1e-07 0.00012 22.3 0.5 1 25 270 294 270 295 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 OSR2-201 - 312 2.6e-22 78.2 39.7 6 6 0.089 53 4.5 0.1 1 11 298 308 298 312 0.87 Zinc-finger double domain zf-C2H2_4 PF13894.6 24 OSR2-201 - 312 1.4e-17 62.8 41.9 1 5 9.3e-06 0.0055 17.4 2.3 1 23 172 194 172 195 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 OSR2-201 - 312 1.4e-17 62.8 41.9 2 5 3.3e-05 0.02 15.7 2.7 1 23 200 222 200 223 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 OSR2-201 - 312 1.4e-17 62.8 41.9 3 5 0.00021 0.12 13.2 2.0 1 23 228 250 228 251 0.91 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 OSR2-201 - 312 1.4e-17 62.8 41.9 4 5 1.9e-06 0.0011 19.6 1.9 1 23 256 278 256 279 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 OSR2-201 - 312 1.4e-17 62.8 41.9 5 5 9.6e-07 0.00058 20.5 2.6 1 23 284 306 284 307 0.96 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 OSR2-201 - 312 1.5e-09 37.6 35.9 1 5 0.003 1.8 8.7 1.1 2 25 172 195 172 197 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 OSR2-201 - 312 1.5e-09 37.6 35.9 2 5 2.6e-07 0.00015 21.6 1.8 2 26 200 224 200 225 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 OSR2-201 - 312 1.5e-09 37.6 35.9 3 5 0.029 18 5.5 3.3 2 11 228 237 228 239 0.95 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 OSR2-201 - 312 1.5e-09 37.6 35.9 4 5 8.6e-05 0.051 13.6 0.6 2 24 256 278 256 281 0.91 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 OSR2-201 - 312 1.5e-09 37.6 35.9 5 5 0.0028 1.7 8.8 1.2 2 24 284 306 284 308 0.84 C2H2-type zinc finger zf-C2H2_jaz PF12171.8 27 OSR2-201 - 312 5.5e-07 29.7 24.7 1 5 0.00015 0.089 13.1 1.4 2 24 172 194 171 194 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 OSR2-201 - 312 5.5e-07 29.7 24.7 2 5 0.0034 2 8.8 0.7 2 20 200 218 199 220 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 OSR2-201 - 312 5.5e-07 29.7 24.7 3 5 0.035 21 5.6 0.4 2 11 228 237 227 248 0.82 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 OSR2-201 - 312 5.5e-07 29.7 24.7 4 5 9.7e-05 0.058 13.7 0.1 2 23 256 277 255 278 0.91 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 OSR2-201 - 312 5.5e-07 29.7 24.7 5 5 0.17 99 3.4 0.4 2 14 284 296 283 302 0.76 Zinc-finger double-stranded RNA-binding # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/OSR2-201.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/OSR2-201.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/OSR2-201.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/OSR2-201.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/OSR2-201.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:55:45 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-C2H2 PF00096.26 23 OSR2-202 - 276 5.6e-13 48.6 25.2 1 3 6.5e-07 0.00064 20.0 3.3 1 23 172 194 172 194 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 OSR2-202 - 276 5.6e-13 48.6 25.2 2 3 1.3e-07 0.00013 22.2 4.5 1 23 200 222 200 222 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 OSR2-202 - 276 5.6e-13 48.6 25.2 3 3 3.4e-06 0.0034 17.8 2.0 1 23 228 250 228 250 0.96 Zinc finger, C2H2 type zf-H2C2_2 PF13465.6 26 OSR2-202 - 276 2e-11 43.7 20.5 1 3 0.19 1.9e+02 2.8 2.3 12 26 169 183 166 183 0.82 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 OSR2-202 - 276 2e-11 43.7 20.5 2 3 3.5e-09 3.5e-06 27.2 0.8 2 25 187 210 186 211 0.90 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 OSR2-202 - 276 2e-11 43.7 20.5 3 3 3.4e-08 3.4e-05 24.1 3.3 1 24 214 237 214 237 0.97 Zinc-finger double domain zf-C2H2_4 PF13894.6 24 OSR2-202 - 276 5.4e-09 36.1 22.0 1 3 4.7e-06 0.0047 17.7 2.3 1 23 172 194 172 195 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 OSR2-202 - 276 5.4e-09 36.1 22.0 2 3 1.7e-05 0.017 15.9 2.7 1 23 200 222 200 223 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 OSR2-202 - 276 5.4e-09 36.1 22.0 3 3 0.0001 0.1 13.5 2.0 1 23 228 250 228 251 0.91 C2H2-type zinc finger # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/OSR2-202.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/OSR2-202.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/OSR2-202.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/OSR2-202.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/OSR2-202.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:55:46 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-C2H2 PF00096.26 23 OSR2-203 - 312 6.2e-24 83.1 47.7 1 5 1.3e-06 0.00076 19.8 3.3 1 23 172 194 172 194 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 OSR2-203 - 312 6.2e-24 83.1 47.7 2 5 2.5e-07 0.00015 22.0 4.5 1 23 200 222 200 222 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 OSR2-203 - 312 6.2e-24 83.1 47.7 3 5 6.6e-06 0.0039 17.6 2.0 1 23 228 250 228 250 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 OSR2-203 - 312 6.2e-24 83.1 47.7 4 5 8.2e-09 4.9e-06 26.7 3.3 1 23 256 278 256 278 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 OSR2-203 - 312 6.2e-24 83.1 47.7 5 5 3.7e-07 0.00022 21.5 3.4 1 23 284 306 284 306 0.97 Zinc finger, C2H2 type zf-H2C2_2 PF13465.6 26 OSR2-203 - 312 2.6e-22 78.2 39.7 1 6 0.36 2.2e+02 2.5 2.3 12 26 169 183 166 183 0.82 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 OSR2-203 - 312 2.6e-22 78.2 39.7 2 6 6.8e-09 4.1e-06 27.0 0.8 2 25 187 210 186 211 0.90 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 OSR2-203 - 312 2.6e-22 78.2 39.7 3 6 6.6e-08 4e-05 23.9 3.3 1 24 214 237 214 237 0.97 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 OSR2-203 - 312 2.6e-22 78.2 39.7 4 6 3.2e-07 0.00019 21.7 1.0 5 25 246 266 243 267 0.90 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 OSR2-203 - 312 2.6e-22 78.2 39.7 5 6 2.1e-07 0.00012 22.3 0.5 1 25 270 294 270 295 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 OSR2-203 - 312 2.6e-22 78.2 39.7 6 6 0.089 53 4.5 0.1 1 11 298 308 298 312 0.87 Zinc-finger double domain zf-C2H2_4 PF13894.6 24 OSR2-203 - 312 1.4e-17 62.8 41.9 1 5 9.3e-06 0.0055 17.4 2.3 1 23 172 194 172 195 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 OSR2-203 - 312 1.4e-17 62.8 41.9 2 5 3.3e-05 0.02 15.7 2.7 1 23 200 222 200 223 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 OSR2-203 - 312 1.4e-17 62.8 41.9 3 5 0.00021 0.12 13.2 2.0 1 23 228 250 228 251 0.91 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 OSR2-203 - 312 1.4e-17 62.8 41.9 4 5 1.9e-06 0.0011 19.6 1.9 1 23 256 278 256 279 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 OSR2-203 - 312 1.4e-17 62.8 41.9 5 5 9.6e-07 0.00058 20.5 2.6 1 23 284 306 284 307 0.96 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 OSR2-203 - 312 1.5e-09 37.6 35.9 1 5 0.003 1.8 8.7 1.1 2 25 172 195 172 197 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 OSR2-203 - 312 1.5e-09 37.6 35.9 2 5 2.6e-07 0.00015 21.6 1.8 2 26 200 224 200 225 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 OSR2-203 - 312 1.5e-09 37.6 35.9 3 5 0.029 18 5.5 3.3 2 11 228 237 228 239 0.95 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 OSR2-203 - 312 1.5e-09 37.6 35.9 4 5 8.6e-05 0.051 13.6 0.6 2 24 256 278 256 281 0.91 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 OSR2-203 - 312 1.5e-09 37.6 35.9 5 5 0.0028 1.7 8.8 1.2 2 24 284 306 284 308 0.84 C2H2-type zinc finger zf-C2H2_jaz PF12171.8 27 OSR2-203 - 312 5.5e-07 29.7 24.7 1 5 0.00015 0.089 13.1 1.4 2 24 172 194 171 194 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 OSR2-203 - 312 5.5e-07 29.7 24.7 2 5 0.0034 2 8.8 0.7 2 20 200 218 199 220 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 OSR2-203 - 312 5.5e-07 29.7 24.7 3 5 0.035 21 5.6 0.4 2 11 228 237 227 248 0.82 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 OSR2-203 - 312 5.5e-07 29.7 24.7 4 5 9.7e-05 0.058 13.7 0.1 2 23 256 277 255 278 0.91 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 OSR2-203 - 312 5.5e-07 29.7 24.7 5 5 0.17 99 3.4 0.4 2 14 284 296 283 302 0.76 Zinc-finger double-stranded RNA-binding # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/OSR2-203.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/OSR2-203.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/OSR2-203.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/OSR2-203.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/OSR2-203.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:55:46 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/OSR2-204.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/OSR2-204.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/OSR2-204.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/OSR2-204.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/OSR2-204.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:55:47 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/OSR2-205.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/OSR2-205.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/OSR2-205.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/OSR2-205.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/OSR2-205.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:55:47 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/OSR2-206.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/OSR2-206.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/OSR2-206.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/OSR2-206.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/OSR2-206.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:55:47 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/OSR2-207.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/OSR2-207.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/OSR2-207.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/OSR2-207.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/OSR2-207.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:55:48 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/OSR2-208.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/OSR2-208.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/OSR2-208.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/OSR2-208.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/OSR2-208.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:55:48 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-C2H2 PF00096.26 23 OSR2-209 - 312 6.2e-24 83.1 47.7 1 5 1.3e-06 0.00076 19.8 3.3 1 23 172 194 172 194 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 OSR2-209 - 312 6.2e-24 83.1 47.7 2 5 2.5e-07 0.00015 22.0 4.5 1 23 200 222 200 222 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 OSR2-209 - 312 6.2e-24 83.1 47.7 3 5 6.6e-06 0.0039 17.6 2.0 1 23 228 250 228 250 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 OSR2-209 - 312 6.2e-24 83.1 47.7 4 5 8.2e-09 4.9e-06 26.7 3.3 1 23 256 278 256 278 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 OSR2-209 - 312 6.2e-24 83.1 47.7 5 5 3.7e-07 0.00022 21.5 3.4 1 23 284 306 284 306 0.97 Zinc finger, C2H2 type zf-H2C2_2 PF13465.6 26 OSR2-209 - 312 2.6e-22 78.2 39.7 1 6 0.36 2.2e+02 2.5 2.3 12 26 169 183 166 183 0.82 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 OSR2-209 - 312 2.6e-22 78.2 39.7 2 6 6.8e-09 4.1e-06 27.0 0.8 2 25 187 210 186 211 0.90 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 OSR2-209 - 312 2.6e-22 78.2 39.7 3 6 6.6e-08 4e-05 23.9 3.3 1 24 214 237 214 237 0.97 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 OSR2-209 - 312 2.6e-22 78.2 39.7 4 6 3.2e-07 0.00019 21.7 1.0 5 25 246 266 243 267 0.90 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 OSR2-209 - 312 2.6e-22 78.2 39.7 5 6 2.1e-07 0.00012 22.3 0.5 1 25 270 294 270 295 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 OSR2-209 - 312 2.6e-22 78.2 39.7 6 6 0.089 53 4.5 0.1 1 11 298 308 298 312 0.87 Zinc-finger double domain zf-C2H2_4 PF13894.6 24 OSR2-209 - 312 1.4e-17 62.8 41.9 1 5 9.3e-06 0.0055 17.4 2.3 1 23 172 194 172 195 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 OSR2-209 - 312 1.4e-17 62.8 41.9 2 5 3.3e-05 0.02 15.7 2.7 1 23 200 222 200 223 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 OSR2-209 - 312 1.4e-17 62.8 41.9 3 5 0.00021 0.12 13.2 2.0 1 23 228 250 228 251 0.91 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 OSR2-209 - 312 1.4e-17 62.8 41.9 4 5 1.9e-06 0.0011 19.6 1.9 1 23 256 278 256 279 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 OSR2-209 - 312 1.4e-17 62.8 41.9 5 5 9.6e-07 0.00058 20.5 2.6 1 23 284 306 284 307 0.96 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 OSR2-209 - 312 1.5e-09 37.6 35.9 1 5 0.003 1.8 8.7 1.1 2 25 172 195 172 197 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 OSR2-209 - 312 1.5e-09 37.6 35.9 2 5 2.6e-07 0.00015 21.6 1.8 2 26 200 224 200 225 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 OSR2-209 - 312 1.5e-09 37.6 35.9 3 5 0.029 18 5.5 3.3 2 11 228 237 228 239 0.95 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 OSR2-209 - 312 1.5e-09 37.6 35.9 4 5 8.6e-05 0.051 13.6 0.6 2 24 256 278 256 281 0.91 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 OSR2-209 - 312 1.5e-09 37.6 35.9 5 5 0.0028 1.7 8.8 1.2 2 24 284 306 284 308 0.84 C2H2-type zinc finger zf-C2H2_jaz PF12171.8 27 OSR2-209 - 312 5.5e-07 29.7 24.7 1 5 0.00015 0.089 13.1 1.4 2 24 172 194 171 194 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 OSR2-209 - 312 5.5e-07 29.7 24.7 2 5 0.0034 2 8.8 0.7 2 20 200 218 199 220 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 OSR2-209 - 312 5.5e-07 29.7 24.7 3 5 0.035 21 5.6 0.4 2 11 228 237 227 248 0.82 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 OSR2-209 - 312 5.5e-07 29.7 24.7 4 5 9.7e-05 0.058 13.7 0.1 2 23 256 277 255 278 0.91 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 OSR2-209 - 312 5.5e-07 29.7 24.7 5 5 0.17 99 3.4 0.4 2 14 284 296 283 302 0.76 Zinc-finger double-stranded RNA-binding # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/OSR2-209.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/OSR2-209.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/OSR2-209.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/OSR2-209.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/OSR2-209.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:55:48 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-C2H2 PF00096.26 23 OSR2-210 - 288 5.8e-13 48.5 25.2 1 3 5.7e-07 0.00068 20.0 3.3 1 23 172 194 172 194 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 OSR2-210 - 288 5.8e-13 48.5 25.2 2 3 1.1e-07 0.00014 22.2 4.5 1 23 200 222 200 222 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 OSR2-210 - 288 5.8e-13 48.5 25.2 3 3 3e-06 0.0035 17.7 2.0 1 23 228 250 228 250 0.96 Zinc finger, C2H2 type zf-H2C2_2 PF13465.6 26 OSR2-210 - 288 8.4e-11 41.8 23.5 1 4 0.17 2e+02 2.7 2.3 12 26 169 183 166 183 0.82 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 OSR2-210 - 288 8.4e-11 41.8 23.5 2 4 3.1e-09 3.7e-06 27.1 0.8 2 25 187 210 186 211 0.90 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 OSR2-210 - 288 8.4e-11 41.8 23.5 3 4 3e-08 3.6e-05 24.0 3.3 1 24 214 237 214 237 0.97 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 OSR2-210 - 288 8.4e-11 41.8 23.5 4 4 2.4 2.9e+03 -1.0 0.0 5 17 246 258 243 261 0.81 Zinc-finger double domain zf-C2H2_4 PF13894.6 24 OSR2-210 - 288 5.9e-09 36.0 22.0 1 3 4.2e-06 0.005 17.6 2.3 1 23 172 194 172 195 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 OSR2-210 - 288 5.9e-09 36.0 22.0 2 3 1.5e-05 0.018 15.8 2.7 1 23 200 222 200 223 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 OSR2-210 - 288 5.9e-09 36.0 22.0 3 3 9.3e-05 0.11 13.4 2.0 1 23 228 250 228 251 0.91 C2H2-type zinc finger # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/OSR2-210.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/OSR2-210.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/OSR2-210.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/OSR2-210.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/OSR2-210.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:55:49 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 OVOL1-201 - 267 7.1e-19 67.3 26.0 1 5 0.0024 2.2 8.8 0.1 11 25 110 128 97 129 0.79 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 OVOL1-201 - 267 7.1e-19 67.3 26.0 2 5 2.7e-07 0.00026 21.3 2.8 2 25 133 156 132 157 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 OVOL1-201 - 267 7.1e-19 67.3 26.0 3 5 2.8e-13 2.7e-10 40.2 0.6 1 26 160 185 160 185 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 OVOL1-201 - 267 7.1e-19 67.3 26.0 4 5 0.016 15 6.2 1.0 1 21 188 219 188 221 0.70 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 OVOL1-201 - 267 7.1e-19 67.3 26.0 5 5 0.041 39 4.9 0.1 5 14 231 240 229 243 0.88 Zinc-finger double domain zf-C2H2 PF00096.26 23 OVOL1-201 - 267 6.1e-14 51.6 35.7 1 4 1.8e-06 0.0017 18.7 5.0 1 21 118 138 118 140 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 OVOL1-201 - 267 6.1e-14 51.6 35.7 2 4 1e-07 9.6e-05 22.6 2.4 3 23 148 168 146 168 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 OVOL1-201 - 267 6.1e-14 51.6 35.7 3 4 1.6e-07 0.00015 22.0 3.0 1 23 174 197 174 197 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 OVOL1-201 - 267 6.1e-14 51.6 35.7 4 4 0.021 20 5.9 2.2 1 23 213 235 213 236 0.91 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 OVOL1-201 - 267 7.3e-12 45.1 34.3 1 4 9.9e-05 0.094 13.6 3.7 1 21 118 138 118 140 0.91 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 OVOL1-201 - 267 7.3e-12 45.1 34.3 2 4 2.1e-07 0.0002 21.9 1.4 2 23 147 168 146 169 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 OVOL1-201 - 267 7.3e-12 45.1 34.3 3 4 1e-05 0.0097 16.7 3.0 1 24 174 197 174 197 0.97 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 OVOL1-201 - 267 7.3e-12 45.1 34.3 4 4 0.0015 1.4 10.0 3.3 1 24 213 236 213 236 0.93 C2H2-type zinc finger # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/OVOL1-201.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/OVOL1-201.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/OVOL1-201.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/OVOL1-201.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/OVOL1-201.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:55:49 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/OVOL1-202.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/OVOL1-202.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/OVOL1-202.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/OVOL1-202.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/OVOL1-202.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:55:49 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 OVOL1-203 - 205 3.6e-19 68.2 27.3 1 5 0.0017 1.5 9.3 0.1 11 26 48 67 35 67 0.79 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 OVOL1-203 - 205 3.6e-19 68.2 27.3 2 5 2e-07 0.00018 21.8 2.8 2 25 71 94 70 95 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 OVOL1-203 - 205 3.6e-19 68.2 27.3 3 5 2.1e-13 1.8e-10 40.7 0.6 1 26 98 123 98 123 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 OVOL1-203 - 205 3.6e-19 68.2 27.3 4 5 0.014 13 6.4 1.3 1 21 126 157 126 159 0.70 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 OVOL1-203 - 205 3.6e-19 68.2 27.3 5 5 0.033 29 5.3 0.2 5 14 169 178 167 182 0.88 Zinc-finger double domain zf-C2H2 PF00096.26 23 OVOL1-203 - 205 1.9e-14 53.2 35.7 1 4 1.3e-06 0.0012 19.2 5.0 1 21 56 76 56 78 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 OVOL1-203 - 205 1.9e-14 53.2 35.7 2 4 7.5e-08 6.7e-05 23.1 2.4 3 23 86 106 84 106 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 OVOL1-203 - 205 1.9e-14 53.2 35.7 3 4 1.2e-07 0.0001 22.5 3.0 1 23 112 135 112 135 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 OVOL1-203 - 205 1.9e-14 53.2 35.7 4 4 0.015 14 6.4 2.2 1 23 151 173 151 174 0.91 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 OVOL1-203 - 205 2.5e-12 46.5 34.2 1 4 5.2e-05 0.047 14.6 3.3 1 21 56 76 56 79 0.91 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 OVOL1-203 - 205 2.5e-12 46.5 34.2 2 4 1.8e-07 0.00016 22.2 1.6 2 23 85 106 82 107 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 OVOL1-203 - 205 2.5e-12 46.5 34.2 3 4 7.5e-06 0.0067 17.2 3.0 1 24 112 135 112 135 0.97 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 OVOL1-203 - 205 2.5e-12 46.5 34.2 4 4 0.0011 0.97 10.5 3.3 1 24 151 174 151 174 0.93 C2H2-type zinc finger # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/OVOL1-203.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/OVOL1-203.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/OVOL1-203.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/OVOL1-203.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/OVOL1-203.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:55:50 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 OVOL3-201 - 107 8.4e-12 45.0 26.2 1 3 0.0044 4.1 8.0 8.3 2 24 2 24 1 25 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 OVOL3-201 - 107 8.4e-12 45.0 26.2 2 3 2.9e-13 2.8e-10 40.2 0.3 1 26 29 54 29 54 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 OVOL3-201 - 107 8.4e-12 45.0 26.2 3 3 0.0022 2.1 8.9 0.4 2 24 58 91 57 93 0.68 Zinc-finger double domain zf-C2H2 PF00096.26 23 OVOL3-201 - 107 3.4e-11 43.0 25.4 1 4 2.2 2.1e+03 -0.5 0.7 15 21 1 7 1 9 0.79 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 OVOL3-201 - 107 3.4e-11 43.0 25.4 2 4 5.1e-06 0.0048 17.3 3.7 3 23 17 37 15 37 0.92 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 OVOL3-201 - 107 3.4e-11 43.0 25.4 3 4 1.2e-07 0.00011 22.4 0.8 1 23 43 66 43 66 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 OVOL3-201 - 107 3.4e-11 43.0 25.4 4 4 2.8e-06 0.0027 18.1 0.5 1 23 82 104 82 104 0.96 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 OVOL3-201 - 107 1.3e-08 34.9 23.6 1 4 2.7 2.5e+03 -0.2 0.2 10 20 6 16 3 16 0.67 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 OVOL3-201 - 107 1.3e-08 34.9 23.6 2 4 1.8e-06 0.0017 19.0 4.4 2 23 16 37 15 38 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 OVOL3-201 - 107 1.3e-08 34.9 23.6 3 4 1.4e-06 0.0013 19.4 1.3 1 24 43 66 43 66 0.98 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 OVOL3-201 - 107 1.3e-08 34.9 23.6 4 4 0.0027 2.5 9.2 0.5 1 23 82 104 82 105 0.83 C2H2-type zinc finger # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/OVOL3-201.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/OVOL3-201.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/OVOL3-201.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/OVOL3-201.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/OVOL3-201.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:55:50 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 OVOL3-202 - 190 6.6e-14 51.6 24.5 1 4 0.0047 5 7.7 0.1 17 24 72 79 65 80 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 OVOL3-202 - 190 6.6e-14 51.6 24.5 2 4 0.0096 10 6.8 8.3 2 24 85 107 84 108 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 OVOL3-202 - 190 6.6e-14 51.6 24.5 3 4 6.6e-13 7e-10 38.9 0.3 1 26 112 137 112 137 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 OVOL3-202 - 190 6.6e-14 51.6 24.5 4 4 0.0049 5.2 7.7 0.2 2 24 141 174 140 176 0.67 Zinc-finger double domain zf-C2H2 PF00096.26 23 OVOL3-202 - 190 1.6e-13 50.3 30.8 1 4 3.1e-05 0.033 14.7 2.1 3 21 72 90 72 92 0.95 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 OVOL3-202 - 190 1.6e-13 50.3 30.8 2 4 0.0001 0.11 13.0 6.8 3 23 100 120 96 120 0.92 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 OVOL3-202 - 190 1.6e-13 50.3 30.8 3 4 2.7e-07 0.00028 21.1 0.8 1 23 126 149 126 149 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 OVOL3-202 - 190 1.6e-13 50.3 30.8 4 4 6.2e-06 0.0066 16.9 0.5 1 23 165 187 165 187 0.96 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 OVOL3-202 - 190 6.5e-10 39.0 29.0 1 4 0.00038 0.4 11.7 1.2 3 21 72 90 70 93 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 OVOL3-202 - 190 6.5e-10 39.0 29.0 2 4 7.2e-06 0.0075 17.0 5.2 2 23 99 120 96 121 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 OVOL3-202 - 190 6.5e-10 39.0 29.0 3 4 3.2e-06 0.0033 18.1 1.3 1 24 126 149 126 149 0.97 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 OVOL3-202 - 190 6.5e-10 39.0 29.0 4 4 0.0059 6.2 7.9 0.5 1 23 165 187 165 188 0.83 C2H2-type zinc finger # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/OVOL3-202.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/OVOL3-202.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/OVOL3-202.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/OVOL3-202.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/OVOL3-202.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:55:51 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- BTB PF00651.31 111 PATZ1-201 - 537 5.8e-26 90.9 0.0 1 1 1.1e-28 9.1e-26 90.3 0.0 1 110 30 159 30 160 0.92 BTB/POZ domain zf-C2H2_4 PF13894.6 24 PATZ1-201 - 537 5.4e-19 67.3 15.8 1 4 8.2e-06 0.0067 17.2 0.0 2 23 293 314 292 315 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 PATZ1-201 - 537 5.4e-19 67.3 15.8 2 4 2.3e-06 0.0019 18.9 0.6 2 23 356 377 355 378 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 PATZ1-201 - 537 5.4e-19 67.3 15.8 3 4 1.7e-06 0.0014 19.3 0.9 1 23 383 405 383 406 0.97 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 PATZ1-201 - 537 5.4e-19 67.3 15.8 4 4 9.7e-07 0.00079 20.1 0.3 1 24 413 436 413 436 0.98 C2H2-type zinc finger zf-C2H2 PF00096.26 23 PATZ1-201 - 537 7.9e-16 57.5 23.3 1 5 5.6 4.6e+03 -1.6 0.1 6 19 9 22 8 25 0.89 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 PATZ1-201 - 537 7.9e-16 57.5 23.3 2 5 3.7e-05 0.03 14.8 0.1 2 23 293 314 292 314 0.93 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 PATZ1-201 - 537 7.9e-16 57.5 23.3 3 5 1.9e-06 0.0015 18.9 0.8 3 23 357 377 356 377 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 PATZ1-201 - 537 7.9e-16 57.5 23.3 4 5 1.2e-05 0.01 16.3 1.7 1 23 383 405 383 405 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 PATZ1-201 - 537 7.9e-16 57.5 23.3 5 5 4.1e-07 0.00033 20.9 0.4 1 23 413 436 413 436 0.96 Zinc finger, C2H2 type zf-H2C2_2 PF13465.6 26 PATZ1-201 - 537 9.3e-12 44.8 25.0 1 5 0.16 1.3e+02 3.2 0.0 15 25 292 302 288 303 0.88 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 PATZ1-201 - 537 9.3e-12 44.8 25.0 2 5 0.93 7.6e+02 0.8 0.1 13 24 353 364 347 365 0.83 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 PATZ1-201 - 537 9.3e-12 44.8 25.0 3 5 3.6e-09 3e-06 27.4 2.2 1 26 369 394 369 394 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 PATZ1-201 - 537 9.3e-12 44.8 25.0 4 5 0.00011 0.094 13.2 0.1 3 25 399 423 397 424 0.88 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 PATZ1-201 - 537 9.3e-12 44.8 25.0 5 5 0.00011 0.091 13.2 1.6 1 18 427 445 427 446 0.88 Zinc-finger double domain zf-met PF12874.7 25 PATZ1-201 - 537 5.8e-08 32.9 5.0 1 4 0.00048 0.39 11.2 0.0 3 20 294 311 292 312 0.95 Zinc-finger of C2H2 type zf-met PF12874.7 25 PATZ1-201 - 537 5.8e-08 32.9 5.0 2 4 0.0045 3.7 8.1 0.3 3 22 357 376 355 377 0.91 Zinc-finger of C2H2 type zf-met PF12874.7 25 PATZ1-201 - 537 5.8e-08 32.9 5.0 3 4 0.017 14 6.2 0.2 1 23 383 405 383 405 0.91 Zinc-finger of C2H2 type zf-met PF12874.7 25 PATZ1-201 - 537 5.8e-08 32.9 5.0 4 4 0.016 13 6.3 0.0 1 20 413 432 413 433 0.92 Zinc-finger of C2H2 type zf-C2H2_jaz PF12171.8 27 PATZ1-201 - 537 1.8e-07 31.3 11.0 1 4 0.0008 0.65 10.4 0.0 4 21 294 311 292 314 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 PATZ1-201 - 537 1.8e-07 31.3 11.0 2 4 0.00071 0.58 10.5 0.4 4 24 357 377 354 378 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 PATZ1-201 - 537 1.8e-07 31.3 11.0 3 4 0.056 46 4.5 0.0 2 24 383 405 382 406 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 PATZ1-201 - 537 1.8e-07 31.3 11.0 4 4 0.0011 0.9 9.9 0.3 2 22 413 433 412 443 0.91 Zinc-finger double-stranded RNA-binding # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/PATZ1-201.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/PATZ1-201.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/PATZ1-201.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/PATZ1-201.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/PATZ1-201.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:55:51 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-C2H2_assoc3 PF16637.5 72 PATZ1-202 - 687 1.7e-28 98.6 9.3 1 2 3 2.6e+03 -1.3 0.0 1 11 492 502 492 508 0.86 Putative zinc-finger between two C2H2 zinc-fingers on Patz zf-C2H2_assoc3 PF16637.5 72 PATZ1-202 - 687 1.7e-28 98.6 9.3 2 2 2.1e-31 1.8e-28 98.6 6.2 1 72 536 604 536 604 0.99 Putative zinc-finger between two C2H2 zinc-fingers on Patz zf-C2H2_4 PF13894.6 24 PATZ1-202 - 687 2.9e-28 96.1 54.2 1 8 1e-05 0.0089 16.8 0.0 2 23 293 314 292 315 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 PATZ1-202 - 687 2.9e-28 96.1 54.2 2 8 3e-06 0.0025 18.5 0.6 2 23 356 377 355 378 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 PATZ1-202 - 687 2.9e-28 96.1 54.2 3 8 2.2e-06 0.0019 18.9 0.9 1 23 383 405 383 406 0.97 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 PATZ1-202 - 687 2.9e-28 96.1 54.2 4 8 1.2e-06 0.0011 19.7 0.3 1 24 413 436 413 436 0.98 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 PATZ1-202 - 687 2.9e-28 96.1 54.2 5 8 0.00098 0.84 10.6 2.9 1 20 442 461 442 464 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 PATZ1-202 - 687 2.9e-28 96.1 54.2 6 8 0.013 11 7.2 0.2 2 23 469 489 468 490 0.87 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 PATZ1-202 - 687 2.9e-28 96.1 54.2 7 8 3.6e-07 0.00031 21.3 2.0 3 24 497 518 496 518 0.97 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 PATZ1-202 - 687 2.9e-28 96.1 54.2 8 8 5.9e-06 0.005 17.6 0.8 1 24 605 628 605 628 0.96 C2H2-type zinc finger zf-C2H2 PF00096.26 23 PATZ1-202 - 687 1.3e-26 91.5 55.7 1 9 7.1 6.1e+03 -1.9 0.1 6 19 9 22 8 25 0.89 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 PATZ1-202 - 687 1.3e-26 91.5 55.7 2 9 4.7e-05 0.04 14.4 0.1 2 23 293 314 292 314 0.93 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 PATZ1-202 - 687 1.3e-26 91.5 55.7 3 9 2.4e-06 0.002 18.5 0.8 3 23 357 377 356 377 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 PATZ1-202 - 687 1.3e-26 91.5 55.7 4 9 1.6e-05 0.013 15.9 1.7 1 23 383 405 383 405 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 PATZ1-202 - 687 1.3e-26 91.5 55.7 5 9 5.2e-07 0.00045 20.5 0.4 1 23 413 436 413 436 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 PATZ1-202 - 687 1.3e-26 91.5 55.7 6 9 0.00085 0.72 10.4 3.4 1 20 442 461 442 464 0.94 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 PATZ1-202 - 687 1.3e-26 91.5 55.7 7 9 0.056 48 4.7 0.1 2 23 469 489 468 489 0.88 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 PATZ1-202 - 687 1.3e-26 91.5 55.7 8 9 1.7e-06 0.0014 18.9 1.8 3 23 497 517 496 518 0.95 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 PATZ1-202 - 687 1.3e-26 91.5 55.7 9 9 1.6e-07 0.00014 22.2 0.8 1 23 605 628 605 628 0.98 Zinc finger, C2H2 type BTB PF00651.31 111 PATZ1-202 - 687 8e-26 90.5 0.0 1 1 1.6e-28 1.4e-25 89.7 0.0 1 110 30 159 30 160 0.92 BTB/POZ domain zf-H2C2_2 PF13465.6 26 PATZ1-202 - 687 3e-14 52.7 57.1 1 10 0.2 1.7e+02 2.9 0.0 15 25 292 302 288 303 0.88 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 PATZ1-202 - 687 3e-14 52.7 57.1 2 10 1.2 1e+03 0.5 0.1 13 24 353 364 347 365 0.83 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 PATZ1-202 - 687 3e-14 52.7 57.1 3 10 4.6e-09 4e-06 27.0 2.2 1 26 369 394 369 394 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 PATZ1-202 - 687 3e-14 52.7 57.1 4 10 0.00015 0.13 12.8 0.1 3 25 399 423 397 424 0.88 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 PATZ1-202 - 687 3e-14 52.7 57.1 5 10 7.7e-08 6.6e-05 23.2 1.5 1 26 427 453 427 453 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 PATZ1-202 - 687 3e-14 52.7 57.1 6 10 0.095 81 3.9 1.4 2 23 457 476 456 477 0.87 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 PATZ1-202 - 687 3e-14 52.7 57.1 7 10 0.12 1.1e+02 3.5 0.2 5 25 485 505 482 506 0.80 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 PATZ1-202 - 687 3e-14 52.7 57.1 8 10 0.29 2.5e+02 2.4 0.3 2 11 510 519 509 523 0.88 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 PATZ1-202 - 687 3e-14 52.7 57.1 9 10 0.00068 0.58 10.7 0.8 11 25 601 615 596 616 0.90 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 PATZ1-202 - 687 3e-14 52.7 57.1 10 10 2.1 1.8e+03 -0.3 0.3 2 9 620 628 619 630 0.78 Zinc-finger double domain zf-C2H2_jaz PF12171.8 27 PATZ1-202 - 687 2.1e-13 50.2 28.9 1 9 0.001 0.86 10.0 0.0 4 21 294 311 292 314 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 PATZ1-202 - 687 2.1e-13 50.2 28.9 2 9 0.00091 0.78 10.1 0.4 4 24 357 377 354 378 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 PATZ1-202 - 687 2.1e-13 50.2 28.9 3 9 0.071 61 4.1 0.0 2 24 383 405 382 406 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 PATZ1-202 - 687 2.1e-13 50.2 28.9 4 9 0.0014 1.2 9.5 0.0 2 22 413 433 412 435 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 PATZ1-202 - 687 2.1e-13 50.2 28.9 5 9 0.0017 1.5 9.2 0.0 2 21 442 461 441 462 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 PATZ1-202 - 687 2.1e-13 50.2 28.9 6 9 1.7 1.5e+03 -0.3 0.2 4 10 470 476 469 478 0.91 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 PATZ1-202 - 687 2.1e-13 50.2 28.9 7 9 5.4e-06 0.0046 17.2 0.8 3 24 496 517 494 517 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 PATZ1-202 - 687 2.1e-13 50.2 28.9 8 9 7 6e+03 -2.3 0.0 6 13 540 547 539 549 0.83 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 PATZ1-202 - 687 2.1e-13 50.2 28.9 9 9 0.069 59 4.1 0.3 2 21 605 624 604 626 0.92 Zinc-finger double-stranded RNA-binding zf-met PF12874.7 25 PATZ1-202 - 687 1.3e-11 44.5 28.0 1 8 0.00061 0.52 10.8 0.0 3 20 294 311 292 312 0.95 Zinc-finger of C2H2 type zf-met PF12874.7 25 PATZ1-202 - 687 1.3e-11 44.5 28.0 2 8 0.0057 4.9 7.7 0.3 3 22 357 376 355 377 0.91 Zinc-finger of C2H2 type zf-met PF12874.7 25 PATZ1-202 - 687 1.3e-11 44.5 28.0 3 8 0.022 19 5.8 0.2 1 23 383 405 383 405 0.91 Zinc-finger of C2H2 type zf-met PF12874.7 25 PATZ1-202 - 687 1.3e-11 44.5 28.0 4 8 0.02 17 5.9 0.0 1 20 413 432 413 433 0.92 Zinc-finger of C2H2 type zf-met PF12874.7 25 PATZ1-202 - 687 1.3e-11 44.5 28.0 5 8 0.00083 0.71 10.4 0.4 2 20 443 461 442 462 0.93 Zinc-finger of C2H2 type zf-met PF12874.7 25 PATZ1-202 - 687 1.3e-11 44.5 28.0 6 8 5.6 4.7e+03 -1.8 0.2 3 9 470 476 470 478 0.84 Zinc-finger of C2H2 type zf-met PF12874.7 25 PATZ1-202 - 687 1.3e-11 44.5 28.0 7 8 3.6e-05 0.031 14.7 0.8 2 21 496 515 496 517 0.91 Zinc-finger of C2H2 type zf-met PF12874.7 25 PATZ1-202 - 687 1.3e-11 44.5 28.0 8 8 0.082 70 4.0 0.1 3 21 607 625 604 626 0.91 Zinc-finger of C2H2 type zf-C2H2_6 PF13912.6 27 PATZ1-202 - 687 1.2e-10 41.1 46.0 1 8 0.045 38 4.4 0.1 4 24 294 314 293 314 0.90 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 PATZ1-202 - 687 1.2e-10 41.1 46.0 2 8 0.0091 7.8 6.6 0.4 4 25 357 378 356 380 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 PATZ1-202 - 687 1.2e-10 41.1 46.0 3 8 0.039 34 4.6 0.3 2 13 383 394 383 406 0.78 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 PATZ1-202 - 687 1.2e-10 41.1 46.0 4 8 6.7e-06 0.0057 16.6 0.5 2 25 413 436 413 439 0.91 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 PATZ1-202 - 687 1.2e-10 41.1 46.0 5 8 2.2e-08 1.9e-05 24.5 3.1 2 26 442 466 442 467 0.96 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 PATZ1-202 - 687 1.2e-10 41.1 46.0 6 8 0.36 3.1e+02 1.5 0.1 4 9 470 475 469 478 0.88 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 PATZ1-202 - 687 1.2e-10 41.1 46.0 7 8 0.0069 5.9 7.0 1.1 4 25 497 518 497 520 0.90 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 PATZ1-202 - 687 1.2e-10 41.1 46.0 8 8 0.13 1.1e+02 2.9 0.7 2 18 605 621 604 628 0.79 C2H2-type zinc finger # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/PATZ1-202.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/PATZ1-202.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/PATZ1-202.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/PATZ1-202.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/PATZ1-202.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:55:52 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-C2H2_assoc3 PF16637.5 72 PATZ1-203 - 641 9.4e-29 99.4 7.0 1 1 1.1e-31 9.4e-29 99.4 7.0 1 72 492 558 492 558 0.98 Putative zinc-finger between two C2H2 zinc-fingers on Patz BTB PF00651.31 111 PATZ1-203 - 641 7.1e-26 90.6 0.0 1 1 1.4e-28 1.2e-25 89.8 0.0 1 110 30 159 30 160 0.92 BTB/POZ domain zf-C2H2_4 PF13894.6 24 PATZ1-203 - 641 6.7e-24 82.5 44.7 1 8 9.6e-06 0.0082 16.9 0.0 2 23 293 314 292 315 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 PATZ1-203 - 641 6.7e-24 82.5 44.7 2 8 2.7e-06 0.0023 18.6 0.6 2 23 356 377 355 378 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 PATZ1-203 - 641 6.7e-24 82.5 44.7 3 8 2e-06 0.0017 19.0 0.9 1 23 383 405 383 406 0.97 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 PATZ1-203 - 641 6.7e-24 82.5 44.7 4 8 1.1e-06 0.00098 19.8 0.3 1 24 413 436 413 436 0.98 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 PATZ1-203 - 641 6.7e-24 82.5 44.7 5 8 0.00091 0.77 10.8 2.9 1 20 442 461 442 464 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 PATZ1-203 - 641 6.7e-24 82.5 44.7 6 8 0.012 10 7.3 0.2 2 23 469 489 468 490 0.87 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 PATZ1-203 - 641 6.7e-24 82.5 44.7 7 8 6.1 5.2e+03 -1.1 0.3 3 8 497 502 496 503 0.85 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 PATZ1-203 - 641 6.7e-24 82.5 44.7 8 8 5.4e-06 0.0046 17.7 0.8 1 24 559 582 559 582 0.96 C2H2-type zinc finger zf-C2H2 PF00096.26 23 PATZ1-203 - 641 2.7e-20 71.6 55.3 1 8 6.6 5.6e+03 -1.8 0.1 6 19 9 22 8 25 0.89 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 PATZ1-203 - 641 2.7e-20 71.6 55.3 2 8 4.3e-05 0.037 14.5 0.1 2 23 293 314 292 314 0.93 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 PATZ1-203 - 641 2.7e-20 71.6 55.3 3 8 2.2e-06 0.0019 18.6 0.8 3 23 357 377 356 377 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 PATZ1-203 - 641 2.7e-20 71.6 55.3 4 8 1.4e-05 0.012 16.0 1.7 1 23 383 405 383 405 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 PATZ1-203 - 641 2.7e-20 71.6 55.3 5 8 4.8e-07 0.00041 20.6 0.4 1 23 413 436 413 436 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 PATZ1-203 - 641 2.7e-20 71.6 55.3 6 8 0.00078 0.67 10.5 3.4 1 20 442 461 442 464 0.94 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 PATZ1-203 - 641 2.7e-20 71.6 55.3 7 8 0.052 44 4.8 0.1 2 23 469 489 468 489 0.88 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 PATZ1-203 - 641 2.7e-20 71.6 55.3 8 8 1.5e-07 0.00013 22.3 0.8 1 23 559 582 559 582 0.98 Zinc finger, C2H2 type zf-H2C2_2 PF13465.6 26 PATZ1-203 - 641 2.1e-13 50.0 53.7 1 9 0.19 1.6e+02 3.0 0.0 15 25 292 302 288 303 0.88 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 PATZ1-203 - 641 2.1e-13 50.0 53.7 2 9 1.1 9.3e+02 0.6 0.1 13 24 353 364 347 365 0.83 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 PATZ1-203 - 641 2.1e-13 50.0 53.7 3 9 4.3e-09 3.7e-06 27.1 2.2 1 26 369 394 369 394 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 PATZ1-203 - 641 2.1e-13 50.0 53.7 4 9 0.00014 0.12 12.9 0.1 3 25 399 423 397 424 0.88 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 PATZ1-203 - 641 2.1e-13 50.0 53.7 5 9 7.1e-08 6.1e-05 23.3 1.5 1 26 427 453 427 453 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 PATZ1-203 - 641 2.1e-13 50.0 53.7 6 9 0.087 75 4.0 1.4 2 23 457 476 456 477 0.87 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 PATZ1-203 - 641 2.1e-13 50.0 53.7 7 9 1.1 9.7e+02 0.5 0.5 5 20 485 500 482 507 0.74 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 PATZ1-203 - 641 2.1e-13 50.0 53.7 8 9 0.00063 0.54 10.8 0.8 11 25 555 569 550 570 0.90 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 PATZ1-203 - 641 2.1e-13 50.0 53.7 9 9 1.9 1.7e+03 -0.2 0.3 2 9 574 582 573 584 0.78 Zinc-finger double domain zf-C2H2_jaz PF12171.8 27 PATZ1-203 - 641 5.7e-10 39.2 22.5 1 8 0.00094 0.8 10.1 0.0 4 21 294 311 292 314 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 PATZ1-203 - 641 5.7e-10 39.2 22.5 2 8 0.00084 0.72 10.2 0.4 4 24 357 377 354 378 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 PATZ1-203 - 641 5.7e-10 39.2 22.5 3 8 0.066 56 4.2 0.0 2 24 383 405 382 406 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 PATZ1-203 - 641 5.7e-10 39.2 22.5 4 8 0.0013 1.1 9.6 0.0 2 22 413 433 412 435 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 PATZ1-203 - 641 5.7e-10 39.2 22.5 5 8 0.0016 1.4 9.3 0.0 2 21 442 461 441 462 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 PATZ1-203 - 641 5.7e-10 39.2 22.5 6 8 1.6 1.4e+03 -0.2 0.2 4 10 470 476 469 478 0.91 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 PATZ1-203 - 641 5.7e-10 39.2 22.5 7 8 1.1 9.4e+02 0.3 0.1 3 9 496 502 494 503 0.86 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 PATZ1-203 - 641 5.7e-10 39.2 22.5 8 8 0.064 55 4.2 0.3 2 21 559 578 558 580 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_6 PF13912.6 27 PATZ1-203 - 641 5e-09 35.9 44.2 1 8 0.041 35 4.5 0.1 4 24 294 314 293 314 0.90 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 PATZ1-203 - 641 5e-09 35.9 44.2 2 8 0.0084 7.2 6.7 0.4 4 25 357 378 356 380 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 PATZ1-203 - 641 5e-09 35.9 44.2 3 8 0.036 31 4.7 0.3 2 13 383 394 383 406 0.78 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 PATZ1-203 - 641 5e-09 35.9 44.2 4 8 6.2e-06 0.0053 16.7 0.5 2 25 413 436 413 439 0.91 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 PATZ1-203 - 641 5e-09 35.9 44.2 5 8 2e-08 1.7e-05 24.7 3.1 2 26 442 466 442 467 0.96 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 PATZ1-203 - 641 5e-09 35.9 44.2 6 8 0.34 2.9e+02 1.6 0.1 4 9 470 475 469 478 0.88 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 PATZ1-203 - 641 5e-09 35.9 44.2 7 8 1.5 1.3e+03 -0.4 0.4 4 9 497 502 497 503 0.89 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 PATZ1-203 - 641 5e-09 35.9 44.2 8 8 0.12 1e+02 3.1 0.7 2 18 559 575 558 582 0.79 C2H2-type zinc finger zf-met PF12874.7 25 PATZ1-203 - 641 4.4e-08 33.3 26.2 1 8 0.00057 0.48 10.9 0.0 3 20 294 311 292 312 0.95 Zinc-finger of C2H2 type zf-met PF12874.7 25 PATZ1-203 - 641 4.4e-08 33.3 26.2 2 8 0.0053 4.5 7.8 0.3 3 22 357 376 355 377 0.91 Zinc-finger of C2H2 type zf-met PF12874.7 25 PATZ1-203 - 641 4.4e-08 33.3 26.2 3 8 0.02 17 5.9 0.2 1 23 383 405 383 405 0.91 Zinc-finger of C2H2 type zf-met PF12874.7 25 PATZ1-203 - 641 4.4e-08 33.3 26.2 4 8 0.019 16 6.0 0.0 1 20 413 432 413 433 0.92 Zinc-finger of C2H2 type zf-met PF12874.7 25 PATZ1-203 - 641 4.4e-08 33.3 26.2 5 8 0.00076 0.65 10.5 0.4 2 20 443 461 442 462 0.93 Zinc-finger of C2H2 type zf-met PF12874.7 25 PATZ1-203 - 641 4.4e-08 33.3 26.2 6 8 5.2 4.4e+03 -1.7 0.2 3 9 470 476 470 478 0.84 Zinc-finger of C2H2 type zf-met PF12874.7 25 PATZ1-203 - 641 4.4e-08 33.3 26.2 7 8 0.61 5.2e+02 1.2 0.3 2 8 496 502 496 503 0.87 Zinc-finger of C2H2 type zf-met PF12874.7 25 PATZ1-203 - 641 4.4e-08 33.3 26.2 8 8 0.076 65 4.1 0.1 3 21 561 579 558 580 0.91 Zinc-finger of C2H2 type # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/PATZ1-203.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/PATZ1-203.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/PATZ1-203.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/PATZ1-203.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/PATZ1-203.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:55:52 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- BTB PF00651.31 111 PATZ1-204 - 537 5.3e-26 91.0 0.0 1 1 1.1e-28 9.1e-26 90.3 0.0 1 110 30 159 30 160 0.92 BTB/POZ domain zf-C2H2_4 PF13894.6 24 PATZ1-204 - 537 5.1e-21 73.6 35.9 1 7 7.8e-06 0.0067 17.2 0.0 2 23 293 314 292 315 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 PATZ1-204 - 537 5.1e-21 73.6 35.9 2 7 2.2e-06 0.0019 18.9 0.6 2 23 356 377 355 378 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 PATZ1-204 - 537 5.1e-21 73.6 35.9 3 7 1.6e-06 0.0014 19.3 0.9 1 23 383 405 383 406 0.97 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 PATZ1-204 - 537 5.1e-21 73.6 35.9 4 7 9.3e-07 0.00079 20.1 0.3 1 24 413 436 413 436 0.98 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 PATZ1-204 - 537 5.1e-21 73.6 35.9 5 7 0.00074 0.63 11.0 2.9 1 20 442 461 442 464 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 PATZ1-204 - 537 5.1e-21 73.6 35.9 6 7 0.0097 8.3 7.6 0.2 2 23 469 489 468 490 0.87 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 PATZ1-204 - 537 5.1e-21 73.6 35.9 7 7 3.2 2.7e+03 -0.3 0.1 3 9 497 503 496 507 0.84 C2H2-type zinc finger zf-C2H2 PF00096.26 23 PATZ1-204 - 537 6.4e-17 61.0 43.0 1 8 5.4 4.6e+03 -1.6 0.1 6 19 9 22 8 25 0.89 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 PATZ1-204 - 537 6.4e-17 61.0 43.0 2 8 3.5e-05 0.03 14.8 0.1 2 23 293 314 292 314 0.93 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 PATZ1-204 - 537 6.4e-17 61.0 43.0 3 8 1.8e-06 0.0015 18.9 0.8 3 23 357 377 356 377 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 PATZ1-204 - 537 6.4e-17 61.0 43.0 4 8 1.2e-05 0.01 16.3 1.7 1 23 383 405 383 405 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 PATZ1-204 - 537 6.4e-17 61.0 43.0 5 8 3.9e-07 0.00033 20.9 0.4 1 23 413 436 413 436 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 PATZ1-204 - 537 6.4e-17 61.0 43.0 6 8 0.00064 0.54 10.8 3.4 1 20 442 461 442 464 0.94 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 PATZ1-204 - 537 6.4e-17 61.0 43.0 7 8 0.042 36 5.1 0.1 2 23 469 489 468 489 0.88 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 PATZ1-204 - 537 6.4e-17 61.0 43.0 8 8 5.5 4.7e+03 -1.6 0.1 3 8 497 502 496 505 0.87 Zinc finger, C2H2 type zf-H2C2_2 PF13465.6 26 PATZ1-204 - 537 6e-14 51.7 38.5 1 7 0.15 1.3e+02 3.2 0.0 15 25 292 302 288 303 0.88 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 PATZ1-204 - 537 6e-14 51.7 38.5 2 7 0.89 7.6e+02 0.8 0.1 13 24 353 364 347 365 0.83 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 PATZ1-204 - 537 6e-14 51.7 38.5 3 7 3.5e-09 3e-06 27.4 2.2 1 26 369 394 369 394 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 PATZ1-204 - 537 6e-14 51.7 38.5 4 7 0.00011 0.094 13.2 0.1 3 25 399 423 397 424 0.88 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 PATZ1-204 - 537 6e-14 51.7 38.5 5 7 5.8e-08 4.9e-05 23.6 1.5 1 26 427 453 427 453 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 PATZ1-204 - 537 6e-14 51.7 38.5 6 7 0.071 61 4.3 1.4 2 23 457 476 456 477 0.87 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 PATZ1-204 - 537 6e-14 51.7 38.5 7 7 0.8 6.8e+02 1.0 0.1 5 20 485 500 482 503 0.71 Zinc-finger double domain zf-C2H2_6 PF13912.6 27 PATZ1-204 - 537 6.1e-11 42.0 34.8 1 7 0.034 29 4.8 0.1 4 24 294 314 293 314 0.90 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 PATZ1-204 - 537 6.1e-11 42.0 34.8 2 7 0.0068 5.8 7.0 0.4 4 25 357 378 356 380 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 PATZ1-204 - 537 6.1e-11 42.0 34.8 3 7 0.03 25 5.0 0.3 2 13 383 394 383 406 0.77 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 PATZ1-204 - 537 6.1e-11 42.0 34.8 4 7 5e-06 0.0043 17.0 0.5 2 25 413 436 413 439 0.91 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 PATZ1-204 - 537 6.1e-11 42.0 34.8 5 7 1.6e-08 1.4e-05 24.9 3.1 2 26 442 466 442 467 0.96 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 PATZ1-204 - 537 6.1e-11 42.0 34.8 6 7 0.28 2.4e+02 1.9 0.1 4 9 470 475 469 478 0.88 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 PATZ1-204 - 537 6.1e-11 42.0 34.8 7 7 0.9 7.7e+02 0.3 0.1 4 9 497 502 497 505 0.84 C2H2-type zinc finger zf-C2H2_jaz PF12171.8 27 PATZ1-204 - 537 2.7e-10 40.2 17.6 1 7 0.00076 0.65 10.4 0.0 4 21 294 311 292 314 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 PATZ1-204 - 537 2.7e-10 40.2 17.6 2 7 0.00068 0.58 10.5 0.4 4 24 357 377 354 378 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 PATZ1-204 - 537 2.7e-10 40.2 17.6 3 7 0.054 46 4.5 0.0 2 24 383 405 382 406 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 PATZ1-204 - 537 2.7e-10 40.2 17.6 4 7 0.0011 0.93 9.9 0.0 2 22 413 433 412 435 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 PATZ1-204 - 537 2.7e-10 40.2 17.6 5 7 0.0013 1.1 9.6 0.0 2 21 442 461 441 462 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 PATZ1-204 - 537 2.7e-10 40.2 17.6 6 7 1.3 1.1e+03 0.0 0.2 4 10 470 476 469 478 0.91 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 PATZ1-204 - 537 2.7e-10 40.2 17.6 7 7 0.64 5.5e+02 1.0 0.0 3 10 496 503 494 505 0.84 Zinc-finger double-stranded RNA-binding zf-met PF12874.7 25 PATZ1-204 - 537 6.8e-10 39.0 17.7 1 7 0.00046 0.39 11.2 0.0 3 20 294 311 292 312 0.95 Zinc-finger of C2H2 type zf-met PF12874.7 25 PATZ1-204 - 537 6.8e-10 39.0 17.7 2 7 0.0043 3.7 8.1 0.3 3 22 357 376 355 377 0.91 Zinc-finger of C2H2 type zf-met PF12874.7 25 PATZ1-204 - 537 6.8e-10 39.0 17.7 3 7 0.017 14 6.2 0.2 1 23 383 405 383 405 0.91 Zinc-finger of C2H2 type zf-met PF12874.7 25 PATZ1-204 - 537 6.8e-10 39.0 17.7 4 7 0.015 13 6.3 0.0 1 20 413 432 413 433 0.92 Zinc-finger of C2H2 type zf-met PF12874.7 25 PATZ1-204 - 537 6.8e-10 39.0 17.7 5 7 0.00062 0.53 10.7 0.4 2 20 443 461 442 462 0.93 Zinc-finger of C2H2 type zf-met PF12874.7 25 PATZ1-204 - 537 6.8e-10 39.0 17.7 6 7 3.9 3.3e+03 -1.3 0.1 3 9 470 476 470 479 0.85 Zinc-finger of C2H2 type zf-met PF12874.7 25 PATZ1-204 - 537 6.8e-10 39.0 17.7 7 7 0.17 1.5e+02 3.0 0.0 2 10 496 504 496 509 0.79 Zinc-finger of C2H2 type # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/PATZ1-204.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/PATZ1-204.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/PATZ1-204.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/PATZ1-204.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/PATZ1-204.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:55:52 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/PATZ1-205.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/PATZ1-205.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/PATZ1-205.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/PATZ1-205.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/PATZ1-205.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:55:53 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/PATZ1-206.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/PATZ1-206.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/PATZ1-206.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/PATZ1-206.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/PATZ1-206.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:55:53 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- Tristanin_u2 PF16638.5 130 PRDM10-201 - 1023 1.3e-52 178.1 4.0 1 2 1.5e-55 1.3e-52 178.1 4.0 1 130 294 424 294 424 0.99 Unstructured region on methyltransferase between zinc-fingers Tristanin_u2 PF16638.5 130 PRDM10-201 - 1023 1.3e-52 178.1 4.0 2 2 3 2.5e+03 -0.8 0.3 59 119 966 1007 948 1020 0.50 Unstructured region on methyltransferase between zinc-fingers zf-C2H2 PF00096.26 23 PRDM10-201 - 1023 1.1e-33 113.8 78.3 1 10 7.8e-06 0.0066 16.8 0.4 2 23 270 291 269 291 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 PRDM10-201 - 1023 1.1e-33 113.8 78.3 2 10 2.9e-05 0.025 15.0 1.1 1 23 440 462 440 462 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 PRDM10-201 - 1023 1.1e-33 113.8 78.3 3 10 1.2e-06 0.001 19.4 0.4 2 23 471 492 470 492 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 PRDM10-201 - 1023 1.1e-33 113.8 78.3 4 10 0.0012 1 9.9 0.1 1 23 498 520 498 520 0.92 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 PRDM10-201 - 1023 1.1e-33 113.8 78.3 5 10 2.6e-05 0.022 15.2 2.0 1 23 526 549 526 549 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 PRDM10-201 - 1023 1.1e-33 113.8 78.3 6 10 5.8e-08 4.9e-05 23.5 2.5 1 23 554 576 554 576 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 PRDM10-201 - 1023 1.1e-33 113.8 78.3 7 10 4.3e-07 0.00037 20.8 2.3 2 23 583 605 582 605 0.95 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 PRDM10-201 - 1023 1.1e-33 113.8 78.3 8 10 0.00026 0.22 12.0 1.6 1 23 637 660 637 660 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 PRDM10-201 - 1023 1.1e-33 113.8 78.3 9 10 1.3e-05 0.011 16.1 1.5 1 23 682 705 682 705 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 PRDM10-201 - 1023 1.1e-33 113.8 78.3 10 10 0.00054 0.46 11.0 5.8 3 23 746 767 744 767 0.96 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 PRDM10-201 - 1023 3.1e-29 99.1 73.8 1 10 1.1e-05 0.0096 16.7 0.4 2 23 270 291 269 292 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 PRDM10-201 - 1023 3.1e-29 99.1 73.8 2 10 1.3e-05 0.011 16.5 0.6 1 23 440 462 440 463 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 PRDM10-201 - 1023 3.1e-29 99.1 73.8 3 10 1e-05 0.0087 16.8 0.4 2 23 471 492 470 493 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 PRDM10-201 - 1023 3.1e-29 99.1 73.8 4 10 0.00032 0.27 12.2 0.1 1 23 498 520 498 521 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 PRDM10-201 - 1023 3.1e-29 99.1 73.8 5 10 0.0005 0.42 11.6 1.8 1 24 526 549 526 549 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 PRDM10-201 - 1023 3.1e-29 99.1 73.8 6 10 9.2e-06 0.0078 17.0 2.1 1 23 554 576 554 577 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 PRDM10-201 - 1023 3.1e-29 99.1 73.8 7 10 4.8e-06 0.0041 17.8 1.7 1 24 582 605 582 605 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 PRDM10-201 - 1023 3.1e-29 99.1 73.8 8 10 0.0014 1.2 10.2 1.0 1 24 637 660 637 660 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 PRDM10-201 - 1023 3.1e-29 99.1 73.8 9 10 0.0027 2.3 9.3 1.2 1 24 682 705 682 705 0.86 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 PRDM10-201 - 1023 3.1e-29 99.1 73.8 10 10 3.1e-05 0.027 15.3 5.9 2 24 745 767 744 767 0.96 C2H2-type zinc finger zf-H2C2_2 PF13465.6 26 PRDM10-201 - 1023 2.4e-19 68.8 66.8 1 11 0.21 1.8e+02 2.8 0.1 11 24 265 278 259 280 0.87 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 PRDM10-201 - 1023 2.4e-19 68.8 66.8 2 11 0.011 9 6.9 0.5 13 24 438 449 429 450 0.84 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 PRDM10-201 - 1023 2.4e-19 68.8 66.8 3 11 3.4e-05 0.029 14.8 0.3 2 24 455 479 454 481 0.89 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 PRDM10-201 - 1023 2.4e-19 68.8 66.8 4 11 1.5e-06 0.0013 19.1 0.3 1 25 484 508 484 509 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 PRDM10-201 - 1023 2.4e-19 68.8 66.8 5 11 3.8e-05 0.032 14.7 0.4 2 24 513 535 513 536 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 PRDM10-201 - 1023 2.4e-19 68.8 66.8 6 11 8.4e-07 0.00072 19.9 1.6 3 24 542 563 541 563 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 PRDM10-201 - 1023 2.4e-19 68.8 66.8 7 11 0.00011 0.092 13.2 1.1 2 26 569 593 568 593 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 PRDM10-201 - 1023 2.4e-19 68.8 66.8 8 11 4.6 3.9e+03 -1.4 4.9 2 14 597 610 596 648 0.49 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 PRDM10-201 - 1023 2.4e-19 68.8 66.8 9 11 0.004 3.4 8.3 0.1 2 26 652 693 651 693 0.61 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 PRDM10-201 - 1023 2.4e-19 68.8 66.8 10 11 0.004 3.4 8.3 0.7 9 25 732 754 729 755 0.75 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 PRDM10-201 - 1023 2.4e-19 68.8 66.8 11 11 1.4 1.2e+03 0.2 0.1 3 12 760 769 758 773 0.77 Zinc-finger double domain zf-C2H2_jaz PF12171.8 27 PRDM10-201 - 1023 3e-19 68.8 51.5 1 10 5e-08 4.3e-05 23.7 0.4 4 24 271 291 269 292 0.95 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 PRDM10-201 - 1023 3e-19 68.8 51.5 2 10 0.0056 4.7 7.6 0.1 2 22 440 460 439 460 0.95 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 PRDM10-201 - 1023 3e-19 68.8 51.5 3 10 1.2e-06 0.001 19.3 0.0 3 22 471 490 469 490 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 PRDM10-201 - 1023 3e-19 68.8 51.5 4 10 1.5 1.3e+03 -0.2 0.1 2 20 498 516 497 518 0.82 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 PRDM10-201 - 1023 3e-19 68.8 51.5 5 10 0.0046 4 7.9 0.8 2 23 526 547 525 550 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 PRDM10-201 - 1023 3e-19 68.8 51.5 6 10 0.45 3.8e+02 1.5 0.8 4 11 556 563 553 573 0.79 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 PRDM10-201 - 1023 3e-19 68.8 51.5 7 10 0.0044 3.7 7.9 0.5 4 21 584 601 582 602 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 PRDM10-201 - 1023 3e-19 68.8 51.5 8 10 0.24 2e+02 2.4 0.0 2 22 637 657 636 660 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 PRDM10-201 - 1023 3e-19 68.8 51.5 9 10 1.9e-05 0.016 15.5 1.6 2 21 682 701 681 703 0.95 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 PRDM10-201 - 1023 3e-19 68.8 51.5 10 10 0.00041 0.35 11.2 3.3 4 24 746 766 746 767 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_2 PF12756.7 101 PRDM10-201 - 1023 9.5e-09 35.5 48.6 1 7 0.00063 0.54 10.6 0.3 42 73 261 291 204 296 0.77 C2H2 type zinc-finger (2 copies) zf-C2H2_2 PF12756.7 101 PRDM10-201 - 1023 9.5e-09 35.5 48.6 2 7 0.0023 2 8.8 1.1 49 71 422 460 377 468 0.63 C2H2 type zinc-finger (2 copies) zf-C2H2_2 PF12756.7 101 PRDM10-201 - 1023 9.5e-09 35.5 48.6 3 7 0.035 30 5.0 0.4 51 74 470 493 462 499 0.86 C2H2 type zinc-finger (2 copies) zf-C2H2_2 PF12756.7 101 PRDM10-201 - 1023 9.5e-09 35.5 48.6 4 7 0.045 38 4.7 0.1 50 70 497 517 489 523 0.81 C2H2 type zinc-finger (2 copies) zf-C2H2_2 PF12756.7 101 PRDM10-201 - 1023 9.5e-09 35.5 48.6 5 7 0.00017 0.14 12.5 11.1 2 85 528 616 527 632 0.77 C2H2 type zinc-finger (2 copies) zf-C2H2_2 PF12756.7 101 PRDM10-201 - 1023 9.5e-09 35.5 48.6 6 7 0.019 16 5.9 1.2 2 72 639 703 636 710 0.77 C2H2 type zinc-finger (2 copies) zf-C2H2_2 PF12756.7 101 PRDM10-201 - 1023 9.5e-09 35.5 48.6 7 7 0.0048 4.1 7.8 1.2 51 74 744 767 731 779 0.82 C2H2 type zinc-finger (2 copies) zf-met PF12874.7 25 PRDM10-201 - 1023 1.4e-08 34.8 42.3 1 8 3.7e-06 0.0032 17.8 0.6 3 23 271 291 269 291 0.92 Zinc-finger of C2H2 type zf-met PF12874.7 25 PRDM10-201 - 1023 1.4e-08 34.8 42.3 2 8 9e-07 0.00077 19.8 0.2 2 21 471 490 470 490 0.94 Zinc-finger of C2H2 type zf-met PF12874.7 25 PRDM10-201 - 1023 1.4e-08 34.8 42.3 3 8 0.0094 8 7.0 0.0 1 22 526 547 526 547 0.87 Zinc-finger of C2H2 type zf-met PF12874.7 25 PRDM10-201 - 1023 1.4e-08 34.8 42.3 4 8 0.41 3.5e+02 1.8 0.4 1 14 554 567 554 573 0.78 Zinc-finger of C2H2 type zf-met PF12874.7 25 PRDM10-201 - 1023 1.4e-08 34.8 42.3 5 8 0.026 22 5.6 0.2 3 21 584 602 582 602 0.92 Zinc-finger of C2H2 type zf-met PF12874.7 25 PRDM10-201 - 1023 1.4e-08 34.8 42.3 6 8 0.11 97 3.6 0.1 1 21 637 657 637 660 0.89 Zinc-finger of C2H2 type zf-met PF12874.7 25 PRDM10-201 - 1023 1.4e-08 34.8 42.3 7 8 0.22 1.9e+02 2.7 0.8 1 19 682 700 682 701 0.86 Zinc-finger of C2H2 type zf-met PF12874.7 25 PRDM10-201 - 1023 1.4e-08 34.8 42.3 8 8 1.9 1.6e+03 -0.3 4.5 3 21 746 764 744 767 0.89 Zinc-finger of C2H2 type zf-C2H2_6 PF13912.6 27 PRDM10-201 - 1023 7.1e-08 32.3 51.6 1 8 0.14 1.2e+02 2.8 0.3 4 24 271 291 270 294 0.84 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 PRDM10-201 - 1023 7.1e-08 32.3 51.6 2 8 0.086 73 3.5 0.7 2 20 440 458 440 464 0.76 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 PRDM10-201 - 1023 7.1e-08 32.3 51.6 3 8 1.8e-05 0.015 15.3 0.5 4 26 472 494 471 495 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 PRDM10-201 - 1023 7.1e-08 32.3 51.6 4 8 0.0034 2.9 8.0 1.1 1 12 525 536 525 538 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 PRDM10-201 - 1023 7.1e-08 32.3 51.6 5 8 0.0011 0.97 9.5 0.4 2 24 554 576 553 579 0.87 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 PRDM10-201 - 1023 7.1e-08 32.3 51.6 6 8 3.4e-06 0.0029 17.6 0.4 2 24 582 605 581 608 0.88 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 PRDM10-201 - 1023 7.1e-08 32.3 51.6 7 8 0.014 12 6.0 0.8 4 13 684 693 681 694 0.89 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 PRDM10-201 - 1023 7.1e-08 32.3 51.6 8 8 0.45 3.9e+02 1.2 3.2 3 14 745 756 745 769 0.77 C2H2-type zinc finger # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/PRDM10-201.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/PRDM10-201.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/PRDM10-201.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/PRDM10-201.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/PRDM10-201.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:55:54 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- Tristanin_u2 PF16638.5 130 PRDM10-202 - 1160 1.5e-52 177.8 4.0 1 2 1.6e-55 1.5e-52 177.8 4.0 1 130 380 510 380 510 0.99 Unstructured region on methyltransferase between zinc-fingers Tristanin_u2 PF16638.5 130 PRDM10-202 - 1160 1.5e-52 177.8 4.0 2 2 3.1 2.9e+03 -1.0 0.3 59 119 1103 1144 1085 1157 0.50 Unstructured region on methyltransferase between zinc-fingers zf-C2H2 PF00096.26 23 PRDM10-202 - 1160 4.5e-33 111.8 78.3 1 10 8.1e-06 0.0076 16.6 0.4 2 23 356 377 355 377 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 PRDM10-202 - 1160 4.5e-33 111.8 78.3 2 10 3.1e-05 0.029 14.8 1.1 1 23 530 552 530 552 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 PRDM10-202 - 1160 4.5e-33 111.8 78.3 3 10 1.2e-06 0.0012 19.2 0.4 2 23 561 582 560 582 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 PRDM10-202 - 1160 4.5e-33 111.8 78.3 4 10 0.0013 1.2 9.7 0.1 1 23 588 610 588 610 0.92 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 PRDM10-202 - 1160 4.5e-33 111.8 78.3 5 10 2.7e-05 0.025 15.0 2.0 1 23 616 639 616 639 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 PRDM10-202 - 1160 4.5e-33 111.8 78.3 6 10 6e-08 5.7e-05 23.4 2.5 1 23 644 666 644 666 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 PRDM10-202 - 1160 4.5e-33 111.8 78.3 7 10 4.5e-07 0.00043 20.6 2.3 2 23 673 695 672 695 0.95 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 PRDM10-202 - 1160 4.5e-33 111.8 78.3 8 10 0.00027 0.25 11.9 1.6 1 23 727 750 727 750 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 PRDM10-202 - 1160 4.5e-33 111.8 78.3 9 10 1.4e-05 0.013 15.9 1.5 1 23 772 795 772 795 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 PRDM10-202 - 1160 4.5e-33 111.8 78.3 10 10 0.00057 0.53 10.8 5.8 3 23 836 857 834 857 0.96 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 PRDM10-202 - 1160 1.3e-28 97.2 73.8 1 10 1.2e-05 0.011 16.5 0.4 2 23 356 377 355 378 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 PRDM10-202 - 1160 1.3e-28 97.2 73.8 2 10 1.3e-05 0.013 16.3 0.6 1 23 530 552 530 553 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 PRDM10-202 - 1160 1.3e-28 97.2 73.8 3 10 1.1e-05 0.01 16.6 0.4 2 23 561 582 560 583 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 PRDM10-202 - 1160 1.3e-28 97.2 73.8 4 10 0.00033 0.31 12.0 0.1 1 23 588 610 588 611 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 PRDM10-202 - 1160 1.3e-28 97.2 73.8 5 10 0.00052 0.49 11.4 1.8 1 24 616 639 616 639 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 PRDM10-202 - 1160 1.3e-28 97.2 73.8 6 10 9.6e-06 0.009 16.8 2.1 1 23 644 666 644 667 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 PRDM10-202 - 1160 1.3e-28 97.2 73.8 7 10 5e-06 0.0047 17.6 1.7 1 24 672 695 672 695 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 PRDM10-202 - 1160 1.3e-28 97.2 73.8 8 10 0.0015 1.4 10.0 1.0 1 24 727 750 727 750 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 PRDM10-202 - 1160 1.3e-28 97.2 73.8 9 10 0.0028 2.7 9.1 1.2 1 24 772 795 772 795 0.86 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 PRDM10-202 - 1160 1.3e-28 97.2 73.8 10 10 3.3e-05 0.031 15.1 5.9 2 24 835 857 834 857 0.96 C2H2-type zinc finger zf-H2C2_2 PF13465.6 26 PRDM10-202 - 1160 3.2e-19 68.4 65.0 1 11 0.22 2.1e+02 2.6 0.1 11 24 351 364 345 366 0.87 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 PRDM10-202 - 1160 3.2e-19 68.4 65.0 2 11 0.011 10 6.7 0.5 13 24 528 539 519 540 0.84 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 PRDM10-202 - 1160 3.2e-19 68.4 65.0 3 11 3.6e-05 0.034 14.6 0.3 2 24 545 569 544 571 0.89 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 PRDM10-202 - 1160 3.2e-19 68.4 65.0 4 11 1.5e-06 0.0014 18.9 0.3 1 25 574 598 574 599 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 PRDM10-202 - 1160 3.2e-19 68.4 65.0 5 11 3.9e-05 0.037 14.5 0.4 2 24 603 625 603 626 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 PRDM10-202 - 1160 3.2e-19 68.4 65.0 6 11 8.7e-07 0.00082 19.7 1.6 3 24 632 653 631 653 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 PRDM10-202 - 1160 3.2e-19 68.4 65.0 7 11 0.00011 0.11 13.0 1.1 2 26 659 683 658 683 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 PRDM10-202 - 1160 3.2e-19 68.4 65.0 8 11 1.4 1.3e+03 0.1 3.2 2 14 687 700 686 738 0.49 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 PRDM10-202 - 1160 3.2e-19 68.4 65.0 9 11 0.0042 3.9 8.1 0.1 2 26 742 783 741 783 0.61 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 PRDM10-202 - 1160 3.2e-19 68.4 65.0 10 11 0.0041 3.9 8.1 0.7 9 25 822 844 819 845 0.75 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 PRDM10-202 - 1160 3.2e-19 68.4 65.0 11 11 1.5 1.4e+03 0.0 0.1 3 12 850 859 848 863 0.77 Zinc-finger double domain zf-C2H2_jaz PF12171.8 27 PRDM10-202 - 1160 1.1e-18 67.0 51.5 1 10 5.2e-08 4.9e-05 23.5 0.4 4 24 357 377 355 378 0.95 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 PRDM10-202 - 1160 1.1e-18 67.0 51.5 2 10 0.0058 5.5 7.4 0.1 2 22 530 550 529 550 0.95 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 PRDM10-202 - 1160 1.1e-18 67.0 51.5 3 10 1.2e-06 0.0012 19.1 0.0 3 22 561 580 559 580 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 PRDM10-202 - 1160 1.1e-18 67.0 51.5 4 10 1.6 1.5e+03 -0.3 0.1 2 20 588 606 587 608 0.81 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 PRDM10-202 - 1160 1.1e-18 67.0 51.5 5 10 0.0048 4.5 7.7 0.8 2 23 616 637 615 640 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 PRDM10-202 - 1160 1.1e-18 67.0 51.5 6 10 0.47 4.4e+02 1.3 0.8 4 11 646 653 643 663 0.79 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 PRDM10-202 - 1160 1.1e-18 67.0 51.5 7 10 0.0046 4.3 7.7 0.5 4 21 674 691 672 692 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 PRDM10-202 - 1160 1.1e-18 67.0 51.5 8 10 0.25 2.3e+02 2.2 0.0 2 22 727 747 726 750 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 PRDM10-202 - 1160 1.1e-18 67.0 51.5 9 10 1.9e-05 0.018 15.3 1.6 2 21 772 791 771 793 0.95 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 PRDM10-202 - 1160 1.1e-18 67.0 51.5 10 10 0.00043 0.4 11.0 3.3 4 24 836 856 836 857 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_2 PF12756.7 101 PRDM10-202 - 1160 3.4e-08 33.7 48.5 1 8 0.00067 0.63 10.4 0.3 42 73 347 377 290 382 0.77 C2H2 type zinc-finger (2 copies) zf-C2H2_2 PF12756.7 101 PRDM10-202 - 1160 3.4e-08 33.7 48.5 2 8 0.0026 2.4 8.5 0.8 45 71 524 550 463 557 0.72 C2H2 type zinc-finger (2 copies) zf-C2H2_2 PF12756.7 101 PRDM10-202 - 1160 3.4e-08 33.7 48.5 3 8 0.036 34 4.9 0.3 51 74 560 583 552 589 0.86 C2H2 type zinc-finger (2 copies) zf-C2H2_2 PF12756.7 101 PRDM10-202 - 1160 3.4e-08 33.7 48.5 4 8 0.066 63 4.0 0.0 51 70 588 607 584 611 0.81 C2H2 type zinc-finger (2 copies) zf-C2H2_2 PF12756.7 101 PRDM10-202 - 1160 3.4e-08 33.7 48.5 5 8 0.02 18 5.7 2.0 49 78 613 643 600 655 0.76 C2H2 type zinc-finger (2 copies) zf-C2H2_2 PF12756.7 101 PRDM10-202 - 1160 3.4e-08 33.7 48.5 6 8 0.00019 0.18 12.2 11.2 2 84 618 705 617 722 0.77 C2H2 type zinc-finger (2 copies) zf-C2H2_2 PF12756.7 101 PRDM10-202 - 1160 3.4e-08 33.7 48.5 7 8 0.018 17 5.8 1.1 2 72 729 793 726 800 0.77 C2H2 type zinc-finger (2 copies) zf-C2H2_2 PF12756.7 101 PRDM10-202 - 1160 3.4e-08 33.7 48.5 8 8 0.005 4.7 7.6 1.2 51 74 834 857 821 869 0.82 C2H2 type zinc-finger (2 copies) zf-met PF12874.7 25 PRDM10-202 - 1160 4.1e-08 33.3 42.3 1 8 3.9e-06 0.0037 17.6 0.6 3 23 357 377 355 377 0.92 Zinc-finger of C2H2 type zf-met PF12874.7 25 PRDM10-202 - 1160 4.1e-08 33.3 42.3 2 8 9.3e-07 0.00088 19.6 0.2 2 21 561 580 560 580 0.94 Zinc-finger of C2H2 type zf-met PF12874.7 25 PRDM10-202 - 1160 4.1e-08 33.3 42.3 3 8 0.0097 9.2 6.8 0.0 1 22 616 637 616 637 0.87 Zinc-finger of C2H2 type zf-met PF12874.7 25 PRDM10-202 - 1160 4.1e-08 33.3 42.3 4 8 0.43 4.1e+02 1.6 0.4 1 14 644 657 644 663 0.78 Zinc-finger of C2H2 type zf-met PF12874.7 25 PRDM10-202 - 1160 4.1e-08 33.3 42.3 5 8 0.027 25 5.4 0.2 3 21 674 692 672 692 0.92 Zinc-finger of C2H2 type zf-met PF12874.7 25 PRDM10-202 - 1160 4.1e-08 33.3 42.3 6 8 0.12 1.1e+02 3.4 0.1 1 21 727 747 727 750 0.89 Zinc-finger of C2H2 type zf-met PF12874.7 25 PRDM10-202 - 1160 4.1e-08 33.3 42.3 7 8 0.23 2.1e+02 2.5 0.8 1 19 772 790 772 791 0.86 Zinc-finger of C2H2 type zf-met PF12874.7 25 PRDM10-202 - 1160 4.1e-08 33.3 42.3 8 8 2 1.8e+03 -0.5 4.5 3 21 836 854 834 857 0.89 Zinc-finger of C2H2 type zf-C2H2_6 PF13912.6 27 PRDM10-202 - 1160 2.2e-07 30.7 51.6 1 8 0.15 1.4e+02 2.6 0.3 4 24 357 377 356 380 0.84 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 PRDM10-202 - 1160 2.2e-07 30.7 51.6 2 8 0.089 84 3.3 0.7 2 20 530 548 530 554 0.76 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 PRDM10-202 - 1160 2.2e-07 30.7 51.6 3 8 1.9e-05 0.018 15.1 0.5 4 26 562 584 561 585 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 PRDM10-202 - 1160 2.2e-07 30.7 51.6 4 8 0.0035 3.3 7.8 1.1 1 12 615 626 615 628 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 PRDM10-202 - 1160 2.2e-07 30.7 51.6 5 8 0.0012 1.1 9.3 0.4 2 24 644 666 643 669 0.87 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 PRDM10-202 - 1160 2.2e-07 30.7 51.6 6 8 3.5e-06 0.0033 17.4 0.4 2 24 672 695 671 698 0.88 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 PRDM10-202 - 1160 2.2e-07 30.7 51.6 7 8 0.015 14 5.8 0.8 4 13 774 783 771 784 0.89 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 PRDM10-202 - 1160 2.2e-07 30.7 51.6 8 8 0.47 4.4e+02 1.0 3.2 3 14 835 846 835 859 0.77 C2H2-type zinc finger # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/PRDM10-202.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/PRDM10-202.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/PRDM10-202.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/PRDM10-202.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/PRDM10-202.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:55:54 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- Tristanin_u2 PF16638.5 130 PRDM10-203 - 1156 1.5e-52 177.8 4.0 1 2 1.6e-55 1.5e-52 177.8 4.0 1 130 380 510 380 510 0.99 Unstructured region on methyltransferase between zinc-fingers Tristanin_u2 PF16638.5 130 PRDM10-203 - 1156 1.5e-52 177.8 4.0 2 2 3.1 2.9e+03 -1.0 0.3 59 119 1099 1140 1081 1153 0.50 Unstructured region on methyltransferase between zinc-fingers zf-C2H2 PF00096.26 23 PRDM10-203 - 1156 4.4e-33 111.9 78.3 1 10 8.1e-06 0.0076 16.7 0.4 2 23 356 377 355 377 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 PRDM10-203 - 1156 4.4e-33 111.9 78.3 2 10 3.1e-05 0.029 14.8 1.1 1 23 526 548 526 548 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 PRDM10-203 - 1156 4.4e-33 111.9 78.3 3 10 1.2e-06 0.0011 19.2 0.4 2 23 557 578 556 578 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 PRDM10-203 - 1156 4.4e-33 111.9 78.3 4 10 0.0013 1.2 9.7 0.1 1 23 584 606 584 606 0.92 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 PRDM10-203 - 1156 4.4e-33 111.9 78.3 5 10 2.7e-05 0.025 15.0 2.0 1 23 612 635 612 635 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 PRDM10-203 - 1156 4.4e-33 111.9 78.3 6 10 6e-08 5.6e-05 23.4 2.5 1 23 640 662 640 662 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 PRDM10-203 - 1156 4.4e-33 111.9 78.3 7 10 4.5e-07 0.00042 20.6 2.3 2 23 669 691 668 691 0.95 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 PRDM10-203 - 1156 4.4e-33 111.9 78.3 8 10 0.00027 0.25 11.9 1.6 1 23 723 746 723 746 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 PRDM10-203 - 1156 4.4e-33 111.9 78.3 9 10 1.4e-05 0.013 15.9 1.5 1 23 768 791 768 791 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 PRDM10-203 - 1156 4.4e-33 111.9 78.3 10 10 0.00056 0.53 10.8 5.8 3 23 832 853 830 853 0.96 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 PRDM10-203 - 1156 1.3e-28 97.2 73.8 1 10 1.2e-05 0.011 16.5 0.4 2 23 356 377 355 378 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 PRDM10-203 - 1156 1.3e-28 97.2 73.8 2 10 1.3e-05 0.013 16.3 0.6 1 23 526 548 526 549 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 PRDM10-203 - 1156 1.3e-28 97.2 73.8 3 10 1.1e-05 0.01 16.6 0.4 2 23 557 578 556 579 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 PRDM10-203 - 1156 1.3e-28 97.2 73.8 4 10 0.00033 0.31 12.0 0.1 1 23 584 606 584 607 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 PRDM10-203 - 1156 1.3e-28 97.2 73.8 5 10 0.00052 0.49 11.4 1.8 1 24 612 635 612 635 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 PRDM10-203 - 1156 1.3e-28 97.2 73.8 6 10 9.5e-06 0.009 16.8 2.1 1 23 640 662 640 663 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 PRDM10-203 - 1156 1.3e-28 97.2 73.8 7 10 5e-06 0.0047 17.6 1.7 1 24 668 691 668 691 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 PRDM10-203 - 1156 1.3e-28 97.2 73.8 8 10 0.0015 1.4 10.0 1.0 1 24 723 746 723 746 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 PRDM10-203 - 1156 1.3e-28 97.2 73.8 9 10 0.0028 2.7 9.1 1.2 1 24 768 791 768 791 0.86 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 PRDM10-203 - 1156 1.3e-28 97.2 73.8 10 10 3.3e-05 0.031 15.1 5.9 2 24 831 853 830 853 0.96 C2H2-type zinc finger zf-H2C2_2 PF13465.6 26 PRDM10-203 - 1156 4.4e-19 68.0 65.5 1 11 0.22 2.1e+02 2.6 0.1 11 24 351 364 345 366 0.87 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 PRDM10-203 - 1156 4.4e-19 68.0 65.5 2 11 0.011 10 6.7 0.5 13 24 524 535 515 536 0.84 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 PRDM10-203 - 1156 4.4e-19 68.0 65.5 3 11 3.6e-05 0.034 14.6 0.3 2 24 541 565 540 567 0.89 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 PRDM10-203 - 1156 4.4e-19 68.0 65.5 4 11 1.5e-06 0.0014 18.9 0.3 1 25 570 594 570 595 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 PRDM10-203 - 1156 4.4e-19 68.0 65.5 5 11 3.9e-05 0.037 14.5 0.4 2 24 599 621 599 622 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 PRDM10-203 - 1156 4.4e-19 68.0 65.5 6 11 8.7e-07 0.00082 19.7 1.6 3 24 628 649 627 649 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 PRDM10-203 - 1156 4.4e-19 68.0 65.5 7 11 0.00011 0.11 13.0 1.1 2 26 655 679 654 679 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 PRDM10-203 - 1156 4.4e-19 68.0 65.5 8 11 1.9 1.8e+03 -0.3 3.6 2 14 683 696 682 734 0.49 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 PRDM10-203 - 1156 4.4e-19 68.0 65.5 9 11 0.0042 3.9 8.1 0.1 2 26 738 779 737 779 0.61 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 PRDM10-203 - 1156 4.4e-19 68.0 65.5 10 11 0.0041 3.9 8.1 0.7 9 25 818 840 815 841 0.75 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 PRDM10-203 - 1156 4.4e-19 68.0 65.5 11 11 1.5 1.4e+03 0.0 0.1 3 12 846 855 844 859 0.77 Zinc-finger double domain zf-C2H2_jaz PF12171.8 27 PRDM10-203 - 1156 1.1e-18 67.0 51.5 1 10 5.2e-08 4.9e-05 23.5 0.4 4 24 357 377 355 378 0.95 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 PRDM10-203 - 1156 1.1e-18 67.0 51.5 2 10 0.0058 5.4 7.4 0.1 2 22 526 546 525 546 0.95 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 PRDM10-203 - 1156 1.1e-18 67.0 51.5 3 10 1.2e-06 0.0012 19.1 0.0 3 22 557 576 555 576 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 PRDM10-203 - 1156 1.1e-18 67.0 51.5 4 10 1.6 1.5e+03 -0.3 0.1 2 20 584 602 583 604 0.81 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 PRDM10-203 - 1156 1.1e-18 67.0 51.5 5 10 0.0048 4.5 7.7 0.8 2 23 612 633 611 636 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 PRDM10-203 - 1156 1.1e-18 67.0 51.5 6 10 0.46 4.4e+02 1.3 0.8 4 11 642 649 639 659 0.79 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 PRDM10-203 - 1156 1.1e-18 67.0 51.5 7 10 0.0045 4.3 7.7 0.5 4 21 670 687 668 688 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 PRDM10-203 - 1156 1.1e-18 67.0 51.5 8 10 0.25 2.3e+02 2.2 0.0 2 22 723 743 722 746 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 PRDM10-203 - 1156 1.1e-18 67.0 51.5 9 10 1.9e-05 0.018 15.3 1.6 2 21 768 787 767 789 0.95 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 PRDM10-203 - 1156 1.1e-18 67.0 51.5 10 10 0.00043 0.4 11.0 3.3 4 24 832 852 832 853 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_2 PF12756.7 101 PRDM10-203 - 1156 2.7e-08 34.1 48.5 1 7 0.00066 0.63 10.4 0.3 42 73 347 377 290 382 0.77 C2H2 type zinc-finger (2 copies) zf-C2H2_2 PF12756.7 101 PRDM10-203 - 1156 2.7e-08 34.1 48.5 2 7 0.002 1.9 8.8 0.9 49 71 508 546 463 553 0.63 C2H2 type zinc-finger (2 copies) zf-C2H2_2 PF12756.7 101 PRDM10-203 - 1156 2.7e-08 34.1 48.5 3 7 0.036 34 4.8 0.4 51 74 556 579 548 585 0.86 C2H2 type zinc-finger (2 copies) zf-C2H2_2 PF12756.7 101 PRDM10-203 - 1156 2.7e-08 34.1 48.5 4 7 0.054 51 4.3 0.1 50 70 583 603 576 606 0.81 C2H2 type zinc-finger (2 copies) zf-C2H2_2 PF12756.7 101 PRDM10-203 - 1156 2.7e-08 34.1 48.5 5 7 0.00014 0.13 12.6 10.8 2 84 614 701 612 718 0.77 C2H2 type zinc-finger (2 copies) zf-C2H2_2 PF12756.7 101 PRDM10-203 - 1156 2.7e-08 34.1 48.5 6 7 0.018 17 5.8 1.1 2 72 725 789 722 796 0.77 C2H2 type zinc-finger (2 copies) zf-C2H2_2 PF12756.7 101 PRDM10-203 - 1156 2.7e-08 34.1 48.5 7 7 0.005 4.7 7.6 1.2 51 74 830 853 817 865 0.82 C2H2 type zinc-finger (2 copies) zf-met PF12874.7 25 PRDM10-203 - 1156 4.1e-08 33.3 42.3 1 8 3.9e-06 0.0037 17.6 0.6 3 23 357 377 355 377 0.92 Zinc-finger of C2H2 type zf-met PF12874.7 25 PRDM10-203 - 1156 4.1e-08 33.3 42.3 2 8 9.3e-07 0.00088 19.6 0.2 2 21 557 576 556 576 0.94 Zinc-finger of C2H2 type zf-met PF12874.7 25 PRDM10-203 - 1156 4.1e-08 33.3 42.3 3 8 0.0097 9.2 6.8 0.0 1 22 612 633 612 633 0.87 Zinc-finger of C2H2 type zf-met PF12874.7 25 PRDM10-203 - 1156 4.1e-08 33.3 42.3 4 8 0.43 4e+02 1.6 0.4 1 14 640 653 640 659 0.78 Zinc-finger of C2H2 type zf-met PF12874.7 25 PRDM10-203 - 1156 4.1e-08 33.3 42.3 5 8 0.027 25 5.4 0.2 3 21 670 688 668 688 0.92 Zinc-finger of C2H2 type zf-met PF12874.7 25 PRDM10-203 - 1156 4.1e-08 33.3 42.3 6 8 0.12 1.1e+02 3.4 0.1 1 21 723 743 723 746 0.89 Zinc-finger of C2H2 type zf-met PF12874.7 25 PRDM10-203 - 1156 4.1e-08 33.3 42.3 7 8 0.23 2.1e+02 2.5 0.8 1 19 768 786 768 787 0.86 Zinc-finger of C2H2 type zf-met PF12874.7 25 PRDM10-203 - 1156 4.1e-08 33.3 42.3 8 8 1.9 1.8e+03 -0.5 4.5 3 21 832 850 830 853 0.89 Zinc-finger of C2H2 type zf-C2H2_6 PF13912.6 27 PRDM10-203 - 1156 2.2e-07 30.7 51.6 1 8 0.15 1.4e+02 2.6 0.3 4 24 357 377 356 380 0.84 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 PRDM10-203 - 1156 2.2e-07 30.7 51.6 2 8 0.089 84 3.3 0.7 2 20 526 544 526 550 0.76 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 PRDM10-203 - 1156 2.2e-07 30.7 51.6 3 8 1.9e-05 0.018 15.1 0.5 4 26 558 580 557 581 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 PRDM10-203 - 1156 2.2e-07 30.7 51.6 4 8 0.0035 3.3 7.8 1.1 1 12 611 622 611 624 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 PRDM10-203 - 1156 2.2e-07 30.7 51.6 5 8 0.0012 1.1 9.3 0.4 2 24 640 662 639 665 0.87 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 PRDM10-203 - 1156 2.2e-07 30.7 51.6 6 8 3.5e-06 0.0033 17.4 0.4 2 24 668 691 667 694 0.88 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 PRDM10-203 - 1156 2.2e-07 30.7 51.6 7 8 0.015 14 5.8 0.8 4 13 770 779 767 780 0.89 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 PRDM10-203 - 1156 2.2e-07 30.7 51.6 8 8 0.47 4.4e+02 1.0 3.2 3 14 831 842 831 855 0.77 C2H2-type zinc finger # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/PRDM10-203.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/PRDM10-203.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/PRDM10-203.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/PRDM10-203.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/PRDM10-203.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:55:54 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- Tristanin_u2 PF16638.5 130 PRDM10-204 - 1061 1.3e-52 178.0 4.0 1 2 1.6e-55 1.3e-52 178.0 4.0 1 130 294 424 294 424 0.99 Unstructured region on methyltransferase between zinc-fingers Tristanin_u2 PF16638.5 130 PRDM10-204 - 1061 1.3e-52 178.0 4.0 2 2 3.1 2.6e+03 -0.8 0.3 59 119 1004 1045 986 1058 0.50 Unstructured region on methyltransferase between zinc-fingers zf-C2H2 PF00096.26 23 PRDM10-204 - 1061 1.6e-33 113.2 78.3 1 10 8.1e-06 0.0069 16.8 0.4 2 23 270 291 269 291 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 PRDM10-204 - 1061 1.6e-33 113.2 78.3 2 10 3.1e-05 0.026 15.0 1.1 1 23 444 466 444 466 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 PRDM10-204 - 1061 1.6e-33 113.2 78.3 3 10 1.2e-06 0.001 19.4 0.4 2 23 475 496 474 496 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 PRDM10-204 - 1061 1.6e-33 113.2 78.3 4 10 0.0013 1.1 9.9 0.1 1 23 502 524 502 524 0.92 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 PRDM10-204 - 1061 1.6e-33 113.2 78.3 5 10 2.7e-05 0.023 15.2 2.0 1 23 530 553 530 553 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 PRDM10-204 - 1061 1.6e-33 113.2 78.3 6 10 6e-08 5.1e-05 23.5 2.5 1 23 558 580 558 580 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 PRDM10-204 - 1061 1.6e-33 113.2 78.3 7 10 4.5e-07 0.00039 20.7 2.3 2 23 587 609 586 609 0.95 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 PRDM10-204 - 1061 1.6e-33 113.2 78.3 8 10 0.00027 0.23 12.0 1.6 1 23 641 664 641 664 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 PRDM10-204 - 1061 1.6e-33 113.2 78.3 9 10 1.4e-05 0.012 16.1 1.5 1 23 686 709 686 709 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 PRDM10-204 - 1061 1.6e-33 113.2 78.3 10 10 0.00057 0.48 11.0 5.8 3 23 750 771 748 771 0.96 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 PRDM10-204 - 1061 4.7e-29 98.5 73.8 1 10 1.2e-05 0.01 16.6 0.4 2 23 270 291 269 292 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 PRDM10-204 - 1061 4.7e-29 98.5 73.8 2 10 1.3e-05 0.011 16.5 0.6 1 23 444 466 444 467 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 PRDM10-204 - 1061 4.7e-29 98.5 73.8 3 10 1.1e-05 0.0091 16.8 0.4 2 23 475 496 474 497 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 PRDM10-204 - 1061 4.7e-29 98.5 73.8 4 10 0.00033 0.28 12.1 0.1 1 23 502 524 502 525 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 PRDM10-204 - 1061 4.7e-29 98.5 73.8 5 10 0.00052 0.44 11.5 1.8 1 24 530 553 530 553 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 PRDM10-204 - 1061 4.7e-29 98.5 73.8 6 10 9.6e-06 0.0082 16.9 2.1 1 23 558 580 558 581 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 PRDM10-204 - 1061 4.7e-29 98.5 73.8 7 10 5e-06 0.0043 17.8 1.7 1 24 586 609 586 609 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 PRDM10-204 - 1061 4.7e-29 98.5 73.8 8 10 0.0015 1.3 10.1 1.0 1 24 641 664 641 664 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 PRDM10-204 - 1061 4.7e-29 98.5 73.8 9 10 0.0028 2.4 9.2 1.2 1 24 686 709 686 709 0.86 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 PRDM10-204 - 1061 4.7e-29 98.5 73.8 10 10 3.3e-05 0.028 15.2 5.9 2 24 749 771 748 771 0.96 C2H2-type zinc finger zf-H2C2_2 PF13465.6 26 PRDM10-204 - 1061 3.6e-19 68.3 66.7 1 11 0.22 1.9e+02 2.7 0.1 11 24 265 278 259 280 0.87 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 PRDM10-204 - 1061 3.6e-19 68.3 66.7 2 11 0.011 9.4 6.9 0.5 13 24 442 453 433 454 0.84 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 PRDM10-204 - 1061 3.6e-19 68.3 66.7 3 11 3.6e-05 0.031 14.7 0.3 2 24 459 483 458 485 0.89 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 PRDM10-204 - 1061 3.6e-19 68.3 66.7 4 11 1.5e-06 0.0013 19.1 0.3 1 25 488 512 488 513 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 PRDM10-204 - 1061 3.6e-19 68.3 66.7 5 11 3.9e-05 0.033 14.6 0.4 2 24 517 539 517 540 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 PRDM10-204 - 1061 3.6e-19 68.3 66.7 6 11 8.7e-07 0.00075 19.8 1.6 3 24 546 567 545 567 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 PRDM10-204 - 1061 3.6e-19 68.3 66.7 7 11 0.00011 0.096 13.2 1.1 2 26 573 597 572 597 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 PRDM10-204 - 1061 3.6e-19 68.3 66.7 8 11 4.4 3.7e+03 -1.4 4.8 2 14 601 614 600 652 0.49 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 PRDM10-204 - 1061 3.6e-19 68.3 66.7 9 11 0.0042 3.6 8.2 0.1 2 26 656 697 655 697 0.61 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 PRDM10-204 - 1061 3.6e-19 68.3 66.7 10 11 0.0041 3.5 8.2 0.7 9 25 736 758 733 759 0.75 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 PRDM10-204 - 1061 3.6e-19 68.3 66.7 11 11 1.5 1.3e+03 0.1 0.1 3 12 764 773 762 777 0.77 Zinc-finger double domain zf-C2H2_jaz PF12171.8 27 PRDM10-204 - 1061 4.4e-19 68.3 51.5 1 10 5.2e-08 4.5e-05 23.6 0.4 4 24 271 291 269 292 0.95 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 PRDM10-204 - 1061 4.4e-19 68.3 51.5 2 10 0.0058 4.9 7.5 0.1 2 22 444 464 443 464 0.95 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 PRDM10-204 - 1061 4.4e-19 68.3 51.5 3 10 1.2e-06 0.0011 19.2 0.0 3 22 475 494 473 494 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 PRDM10-204 - 1061 4.4e-19 68.3 51.5 4 10 1.6 1.3e+03 -0.2 0.1 2 20 502 520 501 522 0.81 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 PRDM10-204 - 1061 4.4e-19 68.3 51.5 5 10 0.0048 4.1 7.8 0.8 2 23 530 551 529 554 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 PRDM10-204 - 1061 4.4e-19 68.3 51.5 6 10 0.47 4e+02 1.5 0.8 4 11 560 567 557 577 0.79 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 PRDM10-204 - 1061 4.4e-19 68.3 51.5 7 10 0.0046 3.9 7.9 0.5 4 21 588 605 586 606 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 PRDM10-204 - 1061 4.4e-19 68.3 51.5 8 10 0.25 2.1e+02 2.3 0.0 2 22 641 661 640 664 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 PRDM10-204 - 1061 4.4e-19 68.3 51.5 9 10 2e-05 0.017 15.4 1.6 2 21 686 705 685 707 0.95 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 PRDM10-204 - 1061 4.4e-19 68.3 51.5 10 10 0.00043 0.37 11.1 3.3 4 24 750 770 750 771 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_2 PF12756.7 101 PRDM10-204 - 1061 1.5e-08 34.9 48.5 1 7 0.00066 0.56 10.6 0.3 42 73 261 291 204 296 0.77 C2H2 type zinc-finger (2 copies) zf-C2H2_2 PF12756.7 101 PRDM10-204 - 1061 1.5e-08 34.9 48.5 2 7 0.0034 2.9 8.3 1.2 45 71 438 464 377 472 0.72 C2H2 type zinc-finger (2 copies) zf-C2H2_2 PF12756.7 101 PRDM10-204 - 1061 1.5e-08 34.9 48.5 3 7 0.034 29 5.1 0.3 51 73 474 496 463 502 0.86 C2H2 type zinc-finger (2 copies) zf-C2H2_2 PF12756.7 101 PRDM10-204 - 1061 1.5e-08 34.9 48.5 4 7 0.061 52 4.3 0.1 50 70 501 521 496 525 0.82 C2H2 type zinc-finger (2 copies) zf-C2H2_2 PF12756.7 101 PRDM10-204 - 1061 1.5e-08 34.9 48.5 5 7 0.00016 0.13 12.6 11.0 2 85 532 620 531 636 0.77 C2H2 type zinc-finger (2 copies) zf-C2H2_2 PF12756.7 101 PRDM10-204 - 1061 1.5e-08 34.9 48.5 6 7 0.02 17 5.8 1.2 2 72 643 707 640 714 0.77 C2H2 type zinc-finger (2 copies) zf-C2H2_2 PF12756.7 101 PRDM10-204 - 1061 1.5e-08 34.9 48.5 7 7 0.005 4.3 7.7 1.2 51 74 748 771 735 783 0.82 C2H2 type zinc-finger (2 copies) zf-met PF12874.7 25 PRDM10-204 - 1061 1.9e-08 34.4 42.3 1 8 3.9e-06 0.0033 17.8 0.6 3 23 271 291 269 291 0.92 Zinc-finger of C2H2 type zf-met PF12874.7 25 PRDM10-204 - 1061 1.9e-08 34.4 42.3 2 8 9.3e-07 0.0008 19.7 0.2 2 21 475 494 474 494 0.94 Zinc-finger of C2H2 type zf-met PF12874.7 25 PRDM10-204 - 1061 1.9e-08 34.4 42.3 3 8 0.0098 8.3 7.0 0.0 1 22 530 551 530 551 0.87 Zinc-finger of C2H2 type zf-met PF12874.7 25 PRDM10-204 - 1061 1.9e-08 34.4 42.3 4 8 0.43 3.7e+02 1.7 0.4 1 14 558 571 558 577 0.78 Zinc-finger of C2H2 type zf-met PF12874.7 25 PRDM10-204 - 1061 1.9e-08 34.4 42.3 5 8 0.027 23 5.6 0.2 3 21 588 606 586 606 0.92 Zinc-finger of C2H2 type zf-met PF12874.7 25 PRDM10-204 - 1061 1.9e-08 34.4 42.3 6 8 0.12 1e+02 3.5 0.1 1 21 641 661 641 664 0.89 Zinc-finger of C2H2 type zf-met PF12874.7 25 PRDM10-204 - 1061 1.9e-08 34.4 42.3 7 8 0.23 1.9e+02 2.6 0.8 1 19 686 704 686 705 0.86 Zinc-finger of C2H2 type zf-met PF12874.7 25 PRDM10-204 - 1061 1.9e-08 34.4 42.3 8 8 2 1.7e+03 -0.4 4.5 3 21 750 768 748 771 0.89 Zinc-finger of C2H2 type zf-C2H2_6 PF13912.6 27 PRDM10-204 - 1061 9.9e-08 31.8 51.6 1 8 0.15 1.3e+02 2.8 0.3 4 24 271 291 270 294 0.84 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 PRDM10-204 - 1061 9.9e-08 31.8 51.6 2 8 0.089 76 3.5 0.7 2 20 444 462 444 468 0.76 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 PRDM10-204 - 1061 9.9e-08 31.8 51.6 3 8 1.9e-05 0.016 15.2 0.5 4 26 476 498 475 499 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 PRDM10-204 - 1061 9.9e-08 31.8 51.6 4 8 0.0035 3 8.0 1.1 1 12 529 540 529 542 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 PRDM10-204 - 1061 9.9e-08 31.8 51.6 5 8 0.0012 1 9.5 0.4 2 24 558 580 557 583 0.87 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 PRDM10-204 - 1061 9.9e-08 31.8 51.6 6 8 3.5e-06 0.003 17.5 0.4 2 24 586 609 585 612 0.88 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 PRDM10-204 - 1061 9.9e-08 31.8 51.6 7 8 0.015 13 5.9 0.8 4 13 688 697 685 698 0.89 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 PRDM10-204 - 1061 9.9e-08 31.8 51.6 8 8 0.47 4e+02 1.2 3.2 3 14 749 760 749 773 0.77 C2H2-type zinc finger # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/PRDM10-204.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/PRDM10-204.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/PRDM10-204.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/PRDM10-204.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/PRDM10-204.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:55:55 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- Tristanin_u2 PF16638.5 130 PRDM10-205 - 1074 1.4e-52 178.0 4.0 1 2 1.6e-55 1.4e-52 178.0 4.0 1 130 294 424 294 424 0.99 Unstructured region on methyltransferase between zinc-fingers Tristanin_u2 PF16638.5 130 PRDM10-205 - 1074 1.4e-52 178.0 4.0 2 2 3.1 2.7e+03 -0.9 0.3 59 119 1017 1058 999 1071 0.50 Unstructured region on methyltransferase between zinc-fingers zf-C2H2 PF00096.26 23 PRDM10-205 - 1074 1.9e-33 113.1 78.3 1 10 8.2e-06 0.007 16.8 0.4 2 23 270 291 269 291 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 PRDM10-205 - 1074 1.9e-33 113.1 78.3 2 10 3.1e-05 0.027 14.9 1.1 1 23 444 466 444 466 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 PRDM10-205 - 1074 1.9e-33 113.1 78.3 3 10 1.2e-06 0.0011 19.3 0.4 2 23 475 496 474 496 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 PRDM10-205 - 1074 1.9e-33 113.1 78.3 4 10 0.0013 1.1 9.8 0.1 1 23 502 524 502 524 0.92 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 PRDM10-205 - 1074 1.9e-33 113.1 78.3 5 10 2.7e-05 0.023 15.1 2.0 1 23 530 553 530 553 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 PRDM10-205 - 1074 1.9e-33 113.1 78.3 6 10 6.1e-08 5.2e-05 23.5 2.5 1 23 558 580 558 580 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 PRDM10-205 - 1074 1.9e-33 113.1 78.3 7 10 4.6e-07 0.00039 20.7 2.3 2 23 587 609 586 609 0.95 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 PRDM10-205 - 1074 1.9e-33 113.1 78.3 8 10 0.00027 0.23 12.0 1.6 1 23 641 664 641 664 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 PRDM10-205 - 1074 1.9e-33 113.1 78.3 9 10 1.4e-05 0.012 16.0 1.5 1 23 686 709 686 709 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 PRDM10-205 - 1074 1.9e-33 113.1 78.3 10 10 0.00057 0.49 11.0 5.8 3 23 750 771 748 771 0.96 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 PRDM10-205 - 1074 5.5e-29 98.4 73.8 1 10 1.2e-05 0.01 16.6 0.4 2 23 270 291 269 292 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 PRDM10-205 - 1074 5.5e-29 98.4 73.8 2 10 1.4e-05 0.012 16.4 0.6 1 23 444 466 444 467 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 PRDM10-205 - 1074 5.5e-29 98.4 73.8 3 10 1.1e-05 0.0092 16.7 0.4 2 23 475 496 474 497 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 PRDM10-205 - 1074 5.5e-29 98.4 73.8 4 10 0.00034 0.29 12.1 0.1 1 23 502 524 502 525 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 PRDM10-205 - 1074 5.5e-29 98.4 73.8 5 10 0.00052 0.45 11.5 1.8 1 24 530 553 530 553 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 PRDM10-205 - 1074 5.5e-29 98.4 73.8 6 10 9.7e-06 0.0083 16.9 2.1 1 23 558 580 558 581 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 PRDM10-205 - 1074 5.5e-29 98.4 73.8 7 10 5.1e-06 0.0043 17.8 1.7 1 24 586 609 586 609 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 PRDM10-205 - 1074 5.5e-29 98.4 73.8 8 10 0.0015 1.3 10.1 1.0 1 24 641 664 641 664 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 PRDM10-205 - 1074 5.5e-29 98.4 73.8 9 10 0.0029 2.5 9.2 1.2 1 24 686 709 686 709 0.86 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 PRDM10-205 - 1074 5.5e-29 98.4 73.8 10 10 3.3e-05 0.028 15.2 5.9 2 24 749 771 748 771 0.96 C2H2-type zinc finger zf-H2C2_2 PF13465.6 26 PRDM10-205 - 1074 3.6e-19 68.3 66.5 1 11 0.22 1.9e+02 2.7 0.1 11 24 265 278 259 280 0.87 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 PRDM10-205 - 1074 3.6e-19 68.3 66.5 2 11 0.011 9.5 6.8 0.5 13 24 442 453 433 454 0.84 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 PRDM10-205 - 1074 3.6e-19 68.3 66.5 3 11 3.6e-05 0.031 14.7 0.3 2 24 459 483 458 485 0.89 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 PRDM10-205 - 1074 3.6e-19 68.3 66.5 4 11 1.6e-06 0.0013 19.0 0.3 1 25 488 512 488 513 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 PRDM10-205 - 1074 3.6e-19 68.3 66.5 5 11 4e-05 0.034 14.6 0.4 2 24 517 539 517 540 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 PRDM10-205 - 1074 3.6e-19 68.3 66.5 6 11 8.8e-07 0.00076 19.8 1.6 3 24 546 567 545 567 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 PRDM10-205 - 1074 3.6e-19 68.3 66.5 7 11 0.00011 0.098 13.1 1.1 2 26 573 597 572 597 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 PRDM10-205 - 1074 3.6e-19 68.3 66.5 8 11 3.8 3.2e+03 -1.2 4.6 2 14 601 614 600 652 0.49 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 PRDM10-205 - 1074 3.6e-19 68.3 66.5 9 11 0.0042 3.6 8.2 0.1 2 26 656 697 655 697 0.61 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 PRDM10-205 - 1074 3.6e-19 68.3 66.5 10 11 0.0042 3.6 8.2 0.7 9 25 736 758 733 759 0.75 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 PRDM10-205 - 1074 3.6e-19 68.3 66.5 11 11 1.5 1.3e+03 0.1 0.1 3 12 764 773 762 777 0.77 Zinc-finger double domain zf-C2H2_jaz PF12171.8 27 PRDM10-205 - 1074 5e-19 68.1 51.5 1 10 5.3e-08 4.5e-05 23.6 0.4 4 24 271 291 269 292 0.95 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 PRDM10-205 - 1074 5e-19 68.1 51.5 2 10 0.0059 5 7.5 0.1 2 22 444 464 443 464 0.95 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 PRDM10-205 - 1074 5e-19 68.1 51.5 3 10 1.3e-06 0.0011 19.2 0.0 3 22 475 494 473 494 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 PRDM10-205 - 1074 5e-19 68.1 51.5 4 10 1.6 1.4e+03 -0.2 0.1 2 20 502 520 501 522 0.81 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 PRDM10-205 - 1074 5e-19 68.1 51.5 5 10 0.0049 4.2 7.8 0.8 2 23 530 551 529 554 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 PRDM10-205 - 1074 5e-19 68.1 51.5 6 10 0.47 4e+02 1.5 0.8 4 11 560 567 557 577 0.79 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 PRDM10-205 - 1074 5e-19 68.1 51.5 7 10 0.0046 4 7.9 0.5 4 21 588 605 586 606 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 PRDM10-205 - 1074 5e-19 68.1 51.5 8 10 0.25 2.1e+02 2.3 0.0 2 22 641 661 640 664 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 PRDM10-205 - 1074 5e-19 68.1 51.5 9 10 2e-05 0.017 15.4 1.6 2 21 686 705 685 707 0.95 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 PRDM10-205 - 1074 5e-19 68.1 51.5 10 10 0.00043 0.37 11.1 3.3 4 24 750 770 750 771 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_2 PF12756.7 101 PRDM10-205 - 1074 1.3e-08 35.0 48.2 1 8 0.00067 0.57 10.5 0.3 42 73 261 291 204 296 0.77 C2H2 type zinc-finger (2 copies) zf-C2H2_2 PF12756.7 101 PRDM10-205 - 1074 1.3e-08 35.0 48.2 2 8 0.0024 2 8.8 0.6 45 71 438 464 377 471 0.72 C2H2 type zinc-finger (2 copies) zf-C2H2_2 PF12756.7 101 PRDM10-205 - 1074 1.3e-08 35.0 48.2 3 8 0.039 33 4.9 0.3 51 73 474 496 468 502 0.87 C2H2 type zinc-finger (2 copies) zf-C2H2_2 PF12756.7 101 PRDM10-205 - 1074 1.3e-08 35.0 48.2 4 8 0.062 53 4.2 0.1 50 70 501 521 496 525 0.82 C2H2 type zinc-finger (2 copies) zf-C2H2_2 PF12756.7 101 PRDM10-205 - 1074 1.3e-08 35.0 48.2 5 8 0.012 10 6.5 1.7 46 78 524 557 505 569 0.74 C2H2 type zinc-finger (2 copies) zf-C2H2_2 PF12756.7 101 PRDM10-205 - 1074 1.3e-08 35.0 48.2 6 8 0.00018 0.15 12.4 11.1 2 85 532 620 531 636 0.77 C2H2 type zinc-finger (2 copies) zf-C2H2_2 PF12756.7 101 PRDM10-205 - 1074 1.3e-08 35.0 48.2 7 8 0.019 17 5.8 1.2 2 72 643 707 640 714 0.77 C2H2 type zinc-finger (2 copies) zf-C2H2_2 PF12756.7 101 PRDM10-205 - 1074 1.3e-08 35.0 48.2 8 8 0.0051 4.3 7.7 1.2 51 74 748 771 735 783 0.82 C2H2 type zinc-finger (2 copies) zf-met PF12874.7 25 PRDM10-205 - 1074 2.1e-08 34.2 42.3 1 8 3.9e-06 0.0034 17.7 0.6 3 23 271 291 269 291 0.92 Zinc-finger of C2H2 type zf-met PF12874.7 25 PRDM10-205 - 1074 2.1e-08 34.2 42.3 2 8 9.5e-07 0.00081 19.7 0.2 2 21 475 494 474 494 0.94 Zinc-finger of C2H2 type zf-met PF12874.7 25 PRDM10-205 - 1074 2.1e-08 34.2 42.3 3 8 0.0099 8.4 6.9 0.0 1 22 530 551 530 551 0.87 Zinc-finger of C2H2 type zf-met PF12874.7 25 PRDM10-205 - 1074 2.1e-08 34.2 42.3 4 8 0.44 3.7e+02 1.7 0.4 1 14 558 571 558 577 0.78 Zinc-finger of C2H2 type zf-met PF12874.7 25 PRDM10-205 - 1074 2.1e-08 34.2 42.3 5 8 0.027 23 5.5 0.2 3 21 588 606 586 606 0.92 Zinc-finger of C2H2 type zf-met PF12874.7 25 PRDM10-205 - 1074 2.1e-08 34.2 42.3 6 8 0.12 1e+02 3.5 0.1 1 21 641 661 641 664 0.89 Zinc-finger of C2H2 type zf-met PF12874.7 25 PRDM10-205 - 1074 2.1e-08 34.2 42.3 7 8 0.23 2e+02 2.6 0.8 1 19 686 704 686 705 0.86 Zinc-finger of C2H2 type zf-met PF12874.7 25 PRDM10-205 - 1074 2.1e-08 34.2 42.3 8 8 2 1.7e+03 -0.4 4.5 3 21 750 768 748 771 0.89 Zinc-finger of C2H2 type zf-C2H2_6 PF13912.6 27 PRDM10-205 - 1074 1.1e-07 31.6 51.6 1 8 0.15 1.3e+02 2.7 0.3 4 24 271 291 270 294 0.84 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 PRDM10-205 - 1074 1.1e-07 31.6 51.6 2 8 0.09 77 3.5 0.7 2 20 444 462 444 468 0.76 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 PRDM10-205 - 1074 1.1e-07 31.6 51.6 3 8 1.9e-05 0.016 15.2 0.5 4 26 476 498 475 499 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 PRDM10-205 - 1074 1.1e-07 31.6 51.6 4 8 0.0035 3 7.9 1.1 1 12 529 540 529 542 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 PRDM10-205 - 1074 1.1e-07 31.6 51.6 5 8 0.0012 1 9.4 0.4 2 24 558 580 557 583 0.87 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 PRDM10-205 - 1074 1.1e-07 31.6 51.6 6 8 3.6e-06 0.0031 17.5 0.4 2 24 586 609 585 612 0.88 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 PRDM10-205 - 1074 1.1e-07 31.6 51.6 7 8 0.015 13 5.9 0.8 4 13 688 697 685 698 0.89 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 PRDM10-205 - 1074 1.1e-07 31.6 51.6 8 8 0.48 4.1e+02 1.1 3.2 3 14 749 760 749 773 0.77 C2H2-type zinc finger # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/PRDM10-205.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/PRDM10-205.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/PRDM10-205.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/PRDM10-205.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/PRDM10-205.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:55:55 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/PRDM10-206.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/PRDM10-206.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/PRDM10-206.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/PRDM10-206.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/PRDM10-206.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:55:56 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- Tristanin_u2 PF16638.5 130 PRDM10-207 - 1117 1.4e-52 177.9 4.0 1 2 1.5e-55 1.4e-52 177.9 4.0 1 130 354 484 354 484 0.99 Unstructured region on methyltransferase between zinc-fingers Tristanin_u2 PF16638.5 130 PRDM10-207 - 1117 1.4e-52 177.9 4.0 2 2 2.8 2.8e+03 -0.9 0.3 59 119 1060 1101 1042 1114 0.50 Unstructured region on methyltransferase between zinc-fingers zf-C2H2 PF00096.26 23 PRDM10-207 - 1117 2.9e-33 112.4 78.3 1 10 7.4e-06 0.0073 16.7 0.4 2 23 330 351 329 351 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 PRDM10-207 - 1117 2.9e-33 112.4 78.3 2 10 2.8e-05 0.028 14.9 1.1 1 23 500 522 500 522 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 PRDM10-207 - 1117 2.9e-33 112.4 78.3 3 10 1.1e-06 0.0011 19.3 0.4 2 23 531 552 530 552 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 PRDM10-207 - 1117 2.9e-33 112.4 78.3 4 10 0.0012 1.2 9.8 0.1 1 23 558 580 558 580 0.92 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 PRDM10-207 - 1117 2.9e-33 112.4 78.3 5 10 2.4e-05 0.024 15.1 2.0 1 23 586 609 586 609 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 PRDM10-207 - 1117 2.9e-33 112.4 78.3 6 10 5.5e-08 5.4e-05 23.4 2.5 1 23 614 636 614 636 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 PRDM10-207 - 1117 2.9e-33 112.4 78.3 7 10 4.1e-07 0.00041 20.7 2.3 2 23 643 665 642 665 0.95 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 PRDM10-207 - 1117 2.9e-33 112.4 78.3 8 10 0.00024 0.24 11.9 1.6 1 23 697 720 697 720 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 PRDM10-207 - 1117 2.9e-33 112.4 78.3 9 10 1.3e-05 0.012 16.0 1.5 1 23 742 765 742 765 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 PRDM10-207 - 1117 2.9e-33 112.4 78.3 10 10 0.00051 0.51 10.9 5.8 3 23 806 827 804 827 0.96 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 PRDM10-207 - 1117 8.5e-29 97.8 73.8 1 10 1.1e-05 0.011 16.6 0.4 2 23 330 351 329 352 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 PRDM10-207 - 1117 8.5e-29 97.8 73.8 2 10 1.2e-05 0.012 16.4 0.6 1 23 500 522 500 523 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 PRDM10-207 - 1117 8.5e-29 97.8 73.8 3 10 9.7e-06 0.0097 16.7 0.4 2 23 531 552 530 553 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 PRDM10-207 - 1117 8.5e-29 97.8 73.8 4 10 0.0003 0.3 12.0 0.1 1 23 558 580 558 581 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 PRDM10-207 - 1117 8.5e-29 97.8 73.8 5 10 0.00047 0.47 11.4 1.8 1 24 586 609 586 609 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 PRDM10-207 - 1117 8.5e-29 97.8 73.8 6 10 8.7e-06 0.0087 16.8 2.1 1 23 614 636 614 637 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 PRDM10-207 - 1117 8.5e-29 97.8 73.8 7 10 4.6e-06 0.0045 17.7 1.7 1 24 642 665 642 665 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 PRDM10-207 - 1117 8.5e-29 97.8 73.8 8 10 0.0013 1.3 10.0 1.0 1 24 697 720 697 720 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 PRDM10-207 - 1117 8.5e-29 97.8 73.8 9 10 0.0026 2.6 9.1 1.2 1 24 742 765 742 765 0.86 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 PRDM10-207 - 1117 8.5e-29 97.8 73.8 10 10 3e-05 0.03 15.2 5.9 2 24 805 827 804 827 0.96 C2H2-type zinc finger zf-H2C2_2 PF13465.6 26 PRDM10-207 - 1117 2.9e-19 68.5 65.5 1 11 0.2 2e+02 2.7 0.1 11 24 325 338 319 340 0.87 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 PRDM10-207 - 1117 2.9e-19 68.5 65.5 2 11 0.01 9.9 6.8 0.5 13 24 498 509 489 510 0.84 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 PRDM10-207 - 1117 2.9e-19 68.5 65.5 3 11 3.3e-05 0.032 14.6 0.3 2 24 515 539 514 541 0.89 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 PRDM10-207 - 1117 2.9e-19 68.5 65.5 4 11 1.4e-06 0.0014 19.0 0.3 1 25 544 568 544 569 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 PRDM10-207 - 1117 2.9e-19 68.5 65.5 5 11 3.6e-05 0.035 14.5 0.4 2 24 573 595 573 596 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 PRDM10-207 - 1117 2.9e-19 68.5 65.5 6 11 7.9e-07 0.00079 19.7 1.6 3 24 602 623 601 623 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 PRDM10-207 - 1117 2.9e-19 68.5 65.5 7 11 0.0001 0.1 13.1 1.1 2 26 629 653 628 653 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 PRDM10-207 - 1117 2.9e-19 68.5 65.5 8 11 1.8 1.8e+03 -0.3 3.7 2 14 657 670 656 708 0.49 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 PRDM10-207 - 1117 2.9e-19 68.5 65.5 9 11 0.0038 3.8 8.1 0.1 2 26 712 753 711 753 0.61 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 PRDM10-207 - 1117 2.9e-19 68.5 65.5 10 11 0.0037 3.7 8.1 0.7 9 25 792 814 789 815 0.75 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 PRDM10-207 - 1117 2.9e-19 68.5 65.5 11 11 1.3 1.3e+03 0.1 0.1 3 12 820 829 818 833 0.77 Zinc-finger double domain zf-C2H2_jaz PF12171.8 27 PRDM10-207 - 1117 7.4e-19 67.5 51.5 1 10 4.7e-08 4.7e-05 23.5 0.4 4 24 331 351 329 352 0.95 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 PRDM10-207 - 1117 7.4e-19 67.5 51.5 2 10 0.0053 5.2 7.5 0.1 2 22 500 520 499 520 0.95 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 PRDM10-207 - 1117 7.4e-19 67.5 51.5 3 10 1.1e-06 0.0011 19.2 0.0 3 22 531 550 529 550 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 PRDM10-207 - 1117 7.4e-19 67.5 51.5 4 10 1.4 1.4e+03 -0.3 0.1 2 20 558 576 557 578 0.81 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 PRDM10-207 - 1117 7.4e-19 67.5 51.5 5 10 0.0044 4.4 7.7 0.8 2 23 586 607 585 610 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 PRDM10-207 - 1117 7.4e-19 67.5 51.5 6 10 0.42 4.2e+02 1.4 0.8 4 11 616 623 613 633 0.79 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 PRDM10-207 - 1117 7.4e-19 67.5 51.5 7 10 0.0041 4.1 7.8 0.5 4 21 644 661 642 662 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 PRDM10-207 - 1117 7.4e-19 67.5 51.5 8 10 0.22 2.2e+02 2.3 0.0 2 22 697 717 696 720 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 PRDM10-207 - 1117 7.4e-19 67.5 51.5 9 10 1.8e-05 0.018 15.3 1.6 2 21 742 761 741 763 0.95 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 PRDM10-207 - 1117 7.4e-19 67.5 51.5 10 10 0.00039 0.39 11.1 3.3 4 24 806 826 806 827 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_2 PF12756.7 101 PRDM10-207 - 1117 1.9e-08 34.6 48.4 1 7 0.0006 0.6 10.5 0.3 42 73 321 351 264 356 0.77 C2H2 type zinc-finger (2 copies) zf-C2H2_2 PF12756.7 101 PRDM10-207 - 1117 1.9e-08 34.6 48.4 2 7 0.0017 1.7 9.0 0.8 49 71 482 520 437 527 0.63 C2H2 type zinc-finger (2 copies) zf-C2H2_2 PF12756.7 101 PRDM10-207 - 1117 1.9e-08 34.6 48.4 3 7 0.033 33 4.9 0.4 51 74 530 553 522 559 0.86 C2H2 type zinc-finger (2 copies) zf-C2H2_2 PF12756.7 101 PRDM10-207 - 1117 1.9e-08 34.6 48.4 4 7 0.043 43 4.5 0.0 50 70 557 577 550 585 0.82 C2H2 type zinc-finger (2 copies) zf-C2H2_2 PF12756.7 101 PRDM10-207 - 1117 1.9e-08 34.6 48.4 5 7 0.00011 0.11 12.8 10.7 2 85 588 676 586 692 0.77 C2H2 type zinc-finger (2 copies) zf-C2H2_2 PF12756.7 101 PRDM10-207 - 1117 1.9e-08 34.6 48.4 6 7 0.017 17 5.8 1.1 2 72 699 763 696 770 0.77 C2H2 type zinc-finger (2 copies) zf-C2H2_2 PF12756.7 101 PRDM10-207 - 1117 1.9e-08 34.6 48.4 7 7 0.0046 4.5 7.7 1.2 51 74 804 827 791 839 0.82 C2H2 type zinc-finger (2 copies) zf-met PF12874.7 25 PRDM10-207 - 1117 3e-08 33.8 42.3 1 8 3.5e-06 0.0035 17.7 0.6 3 23 331 351 329 351 0.92 Zinc-finger of C2H2 type zf-met PF12874.7 25 PRDM10-207 - 1117 3e-08 33.8 42.3 2 8 8.5e-07 0.00084 19.6 0.2 2 21 531 550 530 550 0.94 Zinc-finger of C2H2 type zf-met PF12874.7 25 PRDM10-207 - 1117 3e-08 33.8 42.3 3 8 0.0088 8.8 6.9 0.0 1 22 586 607 586 607 0.87 Zinc-finger of C2H2 type zf-met PF12874.7 25 PRDM10-207 - 1117 3e-08 33.8 42.3 4 8 0.39 3.9e+02 1.6 0.4 1 14 614 627 614 633 0.78 Zinc-finger of C2H2 type zf-met PF12874.7 25 PRDM10-207 - 1117 3e-08 33.8 42.3 5 8 0.024 24 5.5 0.2 3 21 644 662 642 662 0.92 Zinc-finger of C2H2 type zf-met PF12874.7 25 PRDM10-207 - 1117 3e-08 33.8 42.3 6 8 0.11 1.1e+02 3.4 0.1 1 21 697 717 697 720 0.89 Zinc-finger of C2H2 type zf-met PF12874.7 25 PRDM10-207 - 1117 3e-08 33.8 42.3 7 8 0.21 2e+02 2.5 0.8 1 19 742 760 742 761 0.86 Zinc-finger of C2H2 type zf-met PF12874.7 25 PRDM10-207 - 1117 3e-08 33.8 42.3 8 8 1.8 1.8e+03 -0.4 4.5 3 21 806 824 804 827 0.89 Zinc-finger of C2H2 type zf-C2H2_6 PF13912.6 27 PRDM10-207 - 1117 1.6e-07 31.1 51.6 1 8 0.14 1.3e+02 2.7 0.3 4 24 331 351 330 354 0.84 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 PRDM10-207 - 1117 1.6e-07 31.1 51.6 2 8 0.081 80 3.4 0.7 2 20 500 518 500 524 0.76 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 PRDM10-207 - 1117 1.6e-07 31.1 51.6 3 8 1.7e-05 0.017 15.1 0.5 4 26 532 554 531 555 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 PRDM10-207 - 1117 1.6e-07 31.1 51.6 4 8 0.0032 3.1 7.9 1.1 1 12 585 596 585 598 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 PRDM10-207 - 1117 1.6e-07 31.1 51.6 5 8 0.0011 1.1 9.4 0.4 2 24 614 636 613 639 0.87 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 PRDM10-207 - 1117 1.6e-07 31.1 51.6 6 8 3.2e-06 0.0032 17.4 0.4 2 24 642 665 641 668 0.88 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 PRDM10-207 - 1117 1.6e-07 31.1 51.6 7 8 0.013 13 5.9 0.8 4 13 744 753 741 754 0.89 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 PRDM10-207 - 1117 1.6e-07 31.1 51.6 8 8 0.43 4.3e+02 1.1 3.2 3 14 805 816 805 829 0.77 C2H2-type zinc finger # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/PRDM10-207.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/PRDM10-207.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/PRDM10-207.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/PRDM10-207.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/PRDM10-207.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:55:56 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/PRDM10-208.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/PRDM10-208.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/PRDM10-208.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/PRDM10-208.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/PRDM10-208.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:55:57 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/PRDM10-209.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/PRDM10-209.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/PRDM10-209.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/PRDM10-209.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/PRDM10-209.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:55:57 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 PRDM1-201 - 691 8.4e-29 98.7 43.4 1 5 0.00014 0.31 11.5 0.2 7 25 433 451 432 452 0.84 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 PRDM1-201 - 691 8.4e-29 98.7 43.4 2 5 2.2e-10 4.8e-07 29.9 0.6 1 25 455 479 455 480 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 PRDM1-201 - 691 8.4e-29 98.7 43.4 3 5 8.5e-10 1.9e-06 28.0 5.4 1 26 483 508 483 508 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 PRDM1-201 - 691 8.4e-29 98.7 43.4 4 5 6.4e-11 1.4e-07 31.6 1.0 1 25 511 535 511 536 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 PRDM1-201 - 691 8.4e-29 98.7 43.4 5 5 2.1e-06 0.0048 17.3 9.7 1 25 539 563 539 564 0.93 Zinc-finger double domain zf-C2H2 PF00096.26 23 PRDM1-201 - 691 3.4e-17 61.9 45.4 1 5 5.4e-08 0.00012 22.3 0.2 1 23 441 463 441 463 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 PRDM1-201 - 691 3.4e-17 61.9 45.4 2 5 3.7e-07 0.00083 19.7 2.5 1 23 469 491 469 491 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 PRDM1-201 - 691 3.4e-17 61.9 45.4 3 5 3.8e-07 0.00086 19.6 5.7 1 23 497 519 497 519 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 PRDM1-201 - 691 3.4e-17 61.9 45.4 4 5 1.1e-05 0.025 15.0 2.9 1 23 525 547 525 547 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 PRDM1-201 - 691 3.4e-17 61.9 45.4 5 5 0.0041 9.2 6.9 5.5 1 21 553 573 553 574 0.95 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 PRDM1-201 - 691 1.7e-08 34.6 44.5 1 5 2.1e-05 0.047 14.5 0.3 1 23 441 463 441 464 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 PRDM1-201 - 691 1.7e-08 34.6 44.5 2 5 0.00017 0.38 11.7 2.2 1 23 469 491 469 492 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 PRDM1-201 - 691 1.7e-08 34.6 44.5 3 5 9.9e-06 0.022 15.6 4.9 1 23 497 519 497 520 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 PRDM1-201 - 691 1.7e-08 34.6 44.5 4 5 0.00084 1.9 9.5 2.8 1 23 525 547 525 548 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 PRDM1-201 - 691 1.7e-08 34.6 44.5 5 5 0.019 44 5.3 5.3 1 21 553 573 553 574 0.95 C2H2-type zinc finger SET PF00856.28 169 PRDM1-201 - 691 6.4e-08 33.2 0.2 1 1 6.3e-11 1.4e-07 32.1 0.2 109 168 12 66 2 67 0.88 SET domain # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/PRDM1-201.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/PRDM1-201.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/PRDM1-201.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/PRDM1-201.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/PRDM1-201.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:55:57 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 PRDM1-202 - 789 1.8e-28 97.6 43.4 1 5 0.00016 0.36 11.3 0.2 7 25 531 549 530 550 0.84 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 PRDM1-202 - 789 1.8e-28 97.6 43.4 2 5 2.5e-10 5.6e-07 29.7 0.6 1 25 553 577 553 578 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 PRDM1-202 - 789 1.8e-28 97.6 43.4 3 5 9.9e-10 2.2e-06 27.8 5.4 1 26 581 606 581 606 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 PRDM1-202 - 789 1.8e-28 97.6 43.4 4 5 7.4e-11 1.7e-07 31.4 1.0 1 25 609 633 609 634 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 PRDM1-202 - 789 1.8e-28 97.6 43.4 5 5 2.5e-06 0.0056 17.1 9.7 1 25 637 661 637 662 0.93 Zinc-finger double domain zf-C2H2 PF00096.26 23 PRDM1-202 - 789 7.2e-17 60.8 45.4 1 5 6.3e-08 0.00014 22.1 0.2 1 23 539 561 539 561 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 PRDM1-202 - 789 7.2e-17 60.8 45.4 2 5 4.3e-07 0.00096 19.5 2.5 1 23 567 589 567 589 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 PRDM1-202 - 789 7.2e-17 60.8 45.4 3 5 4.5e-07 0.001 19.4 5.7 1 23 595 617 595 617 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 PRDM1-202 - 789 7.2e-17 60.8 45.4 4 5 1.3e-05 0.029 14.8 2.9 1 23 623 645 623 645 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 PRDM1-202 - 789 7.2e-17 60.8 45.4 5 5 0.0048 11 6.7 5.5 1 21 651 671 651 672 0.95 Zinc finger, C2H2 type SET PF00856.28 169 PRDM1-202 - 789 3.1e-09 37.4 0.1 1 1 3.9e-12 8.8e-09 36.0 0.1 95 168 73 164 27 165 0.70 SET domain zf-C2H2_4 PF13894.6 24 PRDM1-202 - 789 3.7e-08 33.5 44.5 1 5 2.4e-05 0.055 14.3 0.3 1 23 539 561 539 562 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 PRDM1-202 - 789 3.7e-08 33.5 44.5 2 5 0.0002 0.45 11.5 2.2 1 23 567 589 567 590 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 PRDM1-202 - 789 3.7e-08 33.5 44.5 3 5 1.2e-05 0.026 15.3 4.9 1 23 595 617 595 618 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 PRDM1-202 - 789 3.7e-08 33.5 44.5 4 5 0.00099 2.2 9.3 2.8 1 23 623 645 623 646 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 PRDM1-202 - 789 3.7e-08 33.5 44.5 5 5 0.023 51 5.1 5.3 1 21 651 671 651 672 0.95 C2H2-type zinc finger # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/PRDM1-202.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/PRDM1-202.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/PRDM1-202.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/PRDM1-202.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/PRDM1-202.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:55:58 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 PRDM1-203 - 825 2.1e-28 97.5 43.4 1 5 0.00017 0.38 11.3 0.2 7 25 567 585 566 586 0.84 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 PRDM1-203 - 825 2.1e-28 97.5 43.4 2 5 2.6e-10 5.9e-07 29.6 0.6 1 25 589 613 589 614 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 PRDM1-203 - 825 2.1e-28 97.5 43.4 3 5 1e-09 2.3e-06 27.7 5.4 1 26 617 642 617 642 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 PRDM1-203 - 825 2.1e-28 97.5 43.4 4 5 7.8e-11 1.8e-07 31.3 1.0 1 25 645 669 645 670 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 PRDM1-203 - 825 2.1e-28 97.5 43.4 5 5 2.6e-06 0.0059 17.0 9.7 1 25 673 697 673 698 0.93 Zinc-finger double domain zf-C2H2 PF00096.26 23 PRDM1-203 - 825 9.1e-17 60.5 45.4 1 5 6.6e-08 0.00015 22.0 0.2 1 23 575 597 575 597 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 PRDM1-203 - 825 9.1e-17 60.5 45.4 2 5 4.5e-07 0.001 19.4 2.5 1 23 603 625 603 625 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 PRDM1-203 - 825 9.1e-17 60.5 45.4 3 5 4.7e-07 0.0011 19.4 5.7 1 23 631 653 631 653 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 PRDM1-203 - 825 9.1e-17 60.5 45.4 4 5 1.4e-05 0.031 14.7 2.9 1 23 659 681 659 681 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 PRDM1-203 - 825 9.1e-17 60.5 45.4 5 5 0.005 11 6.7 5.5 1 21 687 707 687 708 0.95 Zinc finger, C2H2 type SET PF00856.28 169 PRDM1-203 - 825 3.1e-09 37.4 0.1 1 1 4.3e-12 9.7e-09 35.8 0.1 95 168 109 200 67 201 0.70 SET domain zf-C2H2_4 PF13894.6 24 PRDM1-203 - 825 4.7e-08 33.2 44.5 1 5 2.6e-05 0.058 14.3 0.3 1 23 575 597 575 598 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 PRDM1-203 - 825 4.7e-08 33.2 44.5 2 5 0.00021 0.47 11.4 2.2 1 23 603 625 603 626 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 PRDM1-203 - 825 4.7e-08 33.2 44.5 3 5 1.2e-05 0.027 15.3 4.9 1 23 631 653 631 654 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 PRDM1-203 - 825 4.7e-08 33.2 44.5 4 5 0.001 2.3 9.3 2.8 1 23 659 681 659 682 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 PRDM1-203 - 825 4.7e-08 33.2 44.5 5 5 0.024 53 5.0 5.3 1 21 687 707 687 708 0.95 C2H2-type zinc finger # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/PRDM1-203.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/PRDM1-203.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/PRDM1-203.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/PRDM1-203.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/PRDM1-203.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:55:58 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/PRDM1-204.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/PRDM1-204.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/PRDM1-204.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/PRDM1-204.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/PRDM1-204.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:55:58 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/PRDM1-205.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/PRDM1-205.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/PRDM1-205.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/PRDM1-205.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/PRDM1-205.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:55:59 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- SET PF00856.28 169 PRDM1-206 - 100 3.2e-09 37.4 0.2 1 1 2.3e-13 4.1e-09 37.1 0.2 108 168 11 66 2 67 0.88 SET domain # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/PRDM1-206.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/PRDM1-206.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/PRDM1-206.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/PRDM1-206.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/PRDM1-206.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:55:59 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/PRDM1-207.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/PRDM1-207.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/PRDM1-207.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/PRDM1-207.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/PRDM1-207.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:56:00 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 PRDM1-208 - 839 2.2e-28 97.4 43.4 1 5 0.00015 0.39 11.2 0.2 7 25 581 599 580 600 0.84 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 PRDM1-208 - 839 2.2e-28 97.4 43.4 2 5 2.4e-10 6e-07 29.6 0.6 1 25 603 627 603 628 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 PRDM1-208 - 839 2.2e-28 97.4 43.4 3 5 9.3e-10 2.4e-06 27.7 5.4 1 26 631 656 631 656 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 PRDM1-208 - 839 2.2e-28 97.4 43.4 4 5 7e-11 1.8e-07 31.3 1.0 1 25 659 683 659 684 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 PRDM1-208 - 839 2.2e-28 97.4 43.4 5 5 2.3e-06 0.006 17.0 9.7 1 25 687 711 687 712 0.93 Zinc-finger double domain zf-C2H2 PF00096.26 23 PRDM1-208 - 839 8.1e-17 60.7 45.4 1 5 5.9e-08 0.00015 22.0 0.2 1 23 589 611 589 611 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 PRDM1-208 - 839 8.1e-17 60.7 45.4 2 5 4e-07 0.001 19.4 2.5 1 23 617 639 617 639 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 PRDM1-208 - 839 8.1e-17 60.7 45.4 3 5 4.2e-07 0.0011 19.3 5.7 1 23 645 667 645 667 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 PRDM1-208 - 839 8.1e-17 60.7 45.4 4 5 1.2e-05 0.032 14.7 2.9 1 23 673 695 673 695 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 PRDM1-208 - 839 8.1e-17 60.7 45.4 5 5 0.0045 12 6.6 5.5 1 21 701 721 701 722 0.95 Zinc finger, C2H2 type SET PF00856.28 169 PRDM1-208 - 839 3.2e-09 37.4 0.2 1 1 4e-12 1e-08 35.8 0.1 95 168 125 214 82 215 0.70 SET domain zf-C2H2_4 PF13894.6 24 PRDM1-208 - 839 4.3e-08 33.3 44.5 1 5 2.3e-05 0.059 14.2 0.3 1 23 589 611 589 612 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 PRDM1-208 - 839 4.3e-08 33.3 44.5 2 5 0.00019 0.48 11.4 2.2 1 23 617 639 617 640 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 PRDM1-208 - 839 4.3e-08 33.3 44.5 3 5 1.1e-05 0.028 15.2 4.9 1 23 645 667 645 668 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 PRDM1-208 - 839 4.3e-08 33.3 44.5 4 5 0.00093 2.4 9.2 2.8 1 23 673 695 673 696 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 PRDM1-208 - 839 4.3e-08 33.3 44.5 5 5 0.021 54 5.0 5.3 1 21 701 721 701 722 0.95 C2H2-type zinc finger # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/PRDM1-208.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/PRDM1-208.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/PRDM1-208.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/PRDM1-208.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/PRDM1-208.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:56:00 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-C2H2 PF00096.26 23 PRDM15-201 - 1507 3e-43 143.9 133.5 1 17 0.57 8.5e+02 0.8 0.0 3 23 565 585 563 585 0.87 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 PRDM15-201 - 1507 3e-43 143.9 133.5 2 17 5.5e-08 8.2e-05 22.8 1.2 1 23 738 760 738 760 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 PRDM15-201 - 1507 3e-43 143.9 133.5 3 17 3.3e-05 0.049 14.1 1.4 1 23 765 788 765 788 0.95 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 PRDM15-201 - 1507 3e-43 143.9 133.5 4 17 0.01 15 6.3 1.0 1 16 799 814 799 819 0.87 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 PRDM15-201 - 1507 3e-43 143.9 133.5 5 17 4.6e-06 0.0069 16.8 4.5 1 23 826 848 826 848 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 PRDM15-201 - 1507 3e-43 143.9 133.5 6 17 5.3e-05 0.08 13.4 1.0 1 23 853 875 853 875 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 PRDM15-201 - 1507 3e-43 143.9 133.5 7 17 3.4e-05 0.05 14.1 2.5 3 23 904 924 904 924 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 PRDM15-201 - 1507 3e-43 143.9 133.5 8 17 2.8e-05 0.042 14.3 0.9 1 23 929 951 929 951 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 PRDM15-201 - 1507 3e-43 143.9 133.5 9 17 0.0021 3.1 8.4 0.6 1 23 992 1015 992 1015 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 PRDM15-201 - 1507 3e-43 143.9 133.5 10 17 0.002 3.1 8.5 0.6 3 23 1022 1042 1020 1042 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 PRDM15-201 - 1507 3e-43 143.9 133.5 11 17 2.7e-06 0.004 17.5 0.2 1 23 1056 1078 1056 1078 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 PRDM15-201 - 1507 3e-43 143.9 133.5 12 17 7e-09 1e-05 25.7 1.1 1 23 1084 1106 1084 1106 0.95 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 PRDM15-201 - 1507 3e-43 143.9 133.5 13 17 0.00013 0.2 12.2 2.9 1 23 1112 1134 1112 1134 0.95 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 PRDM15-201 - 1507 3e-43 143.9 133.5 14 17 0.0017 2.5 8.7 6.3 1 23 1140 1162 1140 1162 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 PRDM15-201 - 1507 3e-43 143.9 133.5 15 17 0.00011 0.17 12.4 0.6 1 23 1168 1190 1168 1190 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 PRDM15-201 - 1507 3e-43 143.9 133.5 16 17 4.2e-06 0.0062 16.9 0.4 2 23 1197 1219 1196 1219 0.95 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 PRDM15-201 - 1507 3e-43 143.9 133.5 17 17 0.00014 0.21 12.1 1.8 2 23 1226 1248 1225 1248 0.96 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 PRDM15-201 - 1507 2.3e-42 140.0 130.3 1 18 7.7 1.1e+04 -2.2 0.5 3 11 248 256 247 259 0.79 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 PRDM15-201 - 1507 2.3e-42 140.0 130.3 2 18 0.0013 1.9 9.6 0.1 2 23 564 585 563 586 0.91 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 PRDM15-201 - 1507 2.3e-42 140.0 130.3 3 18 7.5e-07 0.0011 19.6 0.5 1 23 738 760 738 761 0.97 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 PRDM15-201 - 1507 2.3e-42 140.0 130.3 4 18 8.3e-05 0.12 13.2 1.9 1 24 765 788 765 788 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 PRDM15-201 - 1507 2.3e-42 140.0 130.3 5 18 0.22 3.3e+02 2.6 0.3 1 19 799 817 799 817 0.83 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 PRDM15-201 - 1507 2.3e-42 140.0 130.3 6 18 1.7e-05 0.025 15.4 2.8 1 23 826 848 826 849 0.97 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 PRDM15-201 - 1507 2.3e-42 140.0 130.3 7 18 0.00016 0.24 12.3 0.8 1 23 853 875 853 876 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 PRDM15-201 - 1507 2.3e-42 140.0 130.3 8 18 1.2e-06 0.0018 19.0 1.1 3 23 904 924 903 925 0.97 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 PRDM15-201 - 1507 2.3e-42 140.0 130.3 9 18 0.00012 0.18 12.7 0.9 1 23 929 951 929 952 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 PRDM15-201 - 1507 2.3e-42 140.0 130.3 10 18 0.0035 5.2 8.2 0.5 1 24 992 1015 992 1015 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 PRDM15-201 - 1507 2.3e-42 140.0 130.3 11 18 0.00041 0.62 11.1 0.6 2 23 1021 1042 1020 1043 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 PRDM15-201 - 1507 2.3e-42 140.0 130.3 12 18 2.1e-05 0.031 15.1 0.1 1 23 1056 1078 1056 1079 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 PRDM15-201 - 1507 2.3e-42 140.0 130.3 13 18 1.4e-06 0.0021 18.8 0.7 1 23 1084 1106 1084 1107 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 PRDM15-201 - 1507 2.3e-42 140.0 130.3 14 18 3.9e-05 0.058 14.3 2.6 1 23 1112 1134 1112 1135 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 PRDM15-201 - 1507 2.3e-42 140.0 130.3 15 18 0.00024 0.36 11.8 5.6 1 23 1140 1162 1140 1163 0.97 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 PRDM15-201 - 1507 2.3e-42 140.0 130.3 16 18 3.1e-05 0.046 14.6 0.5 1 23 1168 1190 1168 1191 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 PRDM15-201 - 1507 2.3e-42 140.0 130.3 17 18 0.00019 0.29 12.1 0.6 2 24 1197 1219 1196 1219 0.91 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 PRDM15-201 - 1507 2.3e-42 140.0 130.3 18 18 0.0001 0.15 12.9 1.4 3 24 1227 1248 1226 1248 0.96 C2H2-type zinc finger zf-H2C2_2 PF13465.6 26 PRDM15-201 - 1507 3.4e-28 96.8 111.5 1 17 0.52 7.8e+02 0.8 0.1 13 24 561 572 555 573 0.82 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 PRDM15-201 - 1507 3.4e-28 96.8 111.5 2 17 0.093 1.4e+02 3.2 0.1 10 24 731 747 719 749 0.71 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 PRDM15-201 - 1507 3.4e-28 96.8 111.5 3 17 1.2e-06 0.0019 18.6 0.7 1 25 752 775 752 776 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 PRDM15-201 - 1507 3.4e-28 96.8 111.5 4 17 0.0022 3.3 8.3 0.7 2 24 780 808 779 809 0.83 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 PRDM15-201 - 1507 3.4e-28 96.8 111.5 5 17 2.7 4e+03 -1.4 1.8 12 26 823 837 818 837 0.83 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 PRDM15-201 - 1507 3.4e-28 96.8 111.5 6 17 2.7e-05 0.04 14.4 3.4 1 24 840 862 840 864 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 PRDM15-201 - 1507 3.4e-28 96.8 111.5 7 17 0.17 2.5e+02 2.4 1.9 17 25 904 912 897 913 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 PRDM15-201 - 1507 3.4e-28 96.8 111.5 8 17 0.00023 0.34 11.4 1.0 1 24 916 938 916 940 0.86 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 PRDM15-201 - 1507 3.4e-28 96.8 111.5 9 17 0.0063 9.5 6.9 0.3 4 25 1009 1030 1006 1030 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 PRDM15-201 - 1507 3.4e-28 96.8 111.5 10 17 0.74 1.1e+03 0.3 0.2 5 25 1038 1066 1036 1067 0.64 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 PRDM15-201 - 1507 3.4e-28 96.8 111.5 11 17 1.3e-08 1.9e-05 24.9 0.5 1 25 1070 1094 1070 1095 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 PRDM15-201 - 1507 3.4e-28 96.8 111.5 12 17 2.2e-05 0.033 14.6 0.2 2 23 1099 1120 1098 1123 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 PRDM15-201 - 1507 3.4e-28 96.8 111.5 13 17 9.8e-08 0.00015 22.1 3.7 1 25 1126 1150 1126 1151 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 PRDM15-201 - 1507 3.4e-28 96.8 111.5 14 17 7e-07 0.001 19.4 1.8 3 25 1156 1178 1154 1179 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 PRDM15-201 - 1507 3.4e-28 96.8 111.5 15 17 5.7e-06 0.0086 16.5 0.3 4 26 1185 1207 1183 1207 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 PRDM15-201 - 1507 3.4e-28 96.8 111.5 16 17 2 3e+03 -1.1 0.1 2 21 1211 1231 1210 1236 0.78 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 PRDM15-201 - 1507 3.4e-28 96.8 111.5 17 17 0.29 4.4e+02 1.6 0.5 2 10 1240 1249 1239 1251 0.75 Zinc-finger double domain zf-C2H2_jaz PF12171.8 27 PRDM15-201 - 1507 4.3e-17 61.9 92.4 1 18 0.014 21 5.5 0.0 1 24 562 585 562 586 0.90 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 PRDM15-201 - 1507 4.3e-17 61.9 92.4 2 18 3.1e-05 0.047 14.0 0.8 4 24 740 760 737 761 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 PRDM15-201 - 1507 4.3e-17 61.9 92.4 3 18 4e-05 0.06 13.7 0.5 2 21 765 784 764 785 0.95 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 PRDM15-201 - 1507 4.3e-17 61.9 92.4 4 18 0.018 26 5.2 0.1 2 20 799 817 798 818 0.90 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 PRDM15-201 - 1507 4.3e-17 61.9 92.4 5 18 0.14 2.1e+02 2.3 2.8 2 22 826 846 825 849 0.91 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 PRDM15-201 - 1507 4.3e-17 61.9 92.4 6 18 0.00064 0.96 9.8 0.5 1 22 852 873 852 873 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 PRDM15-201 - 1507 4.3e-17 61.9 92.4 7 18 0.062 92 3.5 0.4 4 23 904 923 904 925 0.91 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 PRDM15-201 - 1507 4.3e-17 61.9 92.4 8 18 0.0061 9.2 6.7 0.2 1 21 928 948 928 949 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 PRDM15-201 - 1507 4.3e-17 61.9 92.4 9 18 2 3e+03 -1.3 0.0 10 22 951 963 950 964 0.90 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 PRDM15-201 - 1507 4.3e-17 61.9 92.4 10 18 0.7 1e+03 0.1 0.2 1 21 991 1011 991 1011 0.91 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 PRDM15-201 - 1507 4.3e-17 61.9 92.4 11 18 0.12 1.7e+02 2.6 0.1 4 21 1022 1039 1020 1040 0.90 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 PRDM15-201 - 1507 4.3e-17 61.9 92.4 12 18 0.00085 1.3 9.4 0.0 3 21 1057 1075 1055 1076 0.91 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 PRDM15-201 - 1507 4.3e-17 61.9 92.4 13 18 0.0042 6.3 7.2 0.3 2 22 1084 1104 1083 1104 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 PRDM15-201 - 1507 4.3e-17 61.9 92.4 14 18 0.019 28 5.1 0.3 4 22 1114 1132 1112 1132 0.95 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 PRDM15-201 - 1507 4.3e-17 61.9 92.4 15 18 0.78 1.2e+03 -0.0 4.5 2 22 1140 1160 1139 1160 0.87 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 PRDM15-201 - 1507 4.3e-17 61.9 92.4 16 18 5.9e-06 0.0089 16.3 0.1 2 21 1168 1187 1167 1188 0.95 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 PRDM15-201 - 1507 4.3e-17 61.9 92.4 17 18 4.4e-05 0.066 13.5 0.8 1 21 1195 1215 1195 1216 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 PRDM15-201 - 1507 4.3e-17 61.9 92.4 18 18 0.78 1.2e+03 -0.0 0.0 4 22 1227 1245 1226 1245 0.91 Zinc-finger double-stranded RNA-binding zf-met PF12874.7 25 PRDM15-201 - 1507 7.9e-14 51.5 101.7 1 17 0.13 1.9e+02 2.6 0.1 1 10 563 572 563 585 0.74 Zinc-finger of C2H2 type zf-met PF12874.7 25 PRDM15-201 - 1507 7.9e-14 51.5 101.7 2 17 0.00014 0.21 12.0 2.4 1 23 738 760 738 760 0.96 Zinc-finger of C2H2 type zf-met PF12874.7 25 PRDM15-201 - 1507 7.9e-14 51.5 101.7 3 17 0.0089 13 6.3 0.5 1 20 765 784 765 785 0.94 Zinc-finger of C2H2 type zf-met PF12874.7 25 PRDM15-201 - 1507 7.9e-14 51.5 101.7 4 17 0.038 57 4.3 0.1 1 19 799 817 799 818 0.85 Zinc-finger of C2H2 type zf-met PF12874.7 25 PRDM15-201 - 1507 7.9e-14 51.5 101.7 5 17 1.1 1.7e+03 -0.4 3.8 1 24 826 847 826 848 0.88 Zinc-finger of C2H2 type zf-met PF12874.7 25 PRDM15-201 - 1507 7.9e-14 51.5 101.7 6 17 0.00016 0.23 11.9 0.2 1 20 853 872 853 873 0.91 Zinc-finger of C2H2 type zf-met PF12874.7 25 PRDM15-201 - 1507 7.9e-14 51.5 101.7 7 17 0.00022 0.33 11.4 0.8 3 20 904 921 903 924 0.96 Zinc-finger of C2H2 type zf-met PF12874.7 25 PRDM15-201 - 1507 7.9e-14 51.5 101.7 8 17 0.003 4.4 7.8 0.1 1 20 929 948 929 951 0.91 Zinc-finger of C2H2 type zf-met PF12874.7 25 PRDM15-201 - 1507 7.9e-14 51.5 101.7 9 17 0.5 7.4e+02 0.8 0.1 1 19 992 1010 992 1011 0.78 Zinc-finger of C2H2 type zf-met PF12874.7 25 PRDM15-201 - 1507 7.9e-14 51.5 101.7 10 17 0.0019 2.9 8.4 0.3 3 21 1022 1040 1020 1043 0.88 Zinc-finger of C2H2 type zf-met PF12874.7 25 PRDM15-201 - 1507 7.9e-14 51.5 101.7 11 17 0.00015 0.22 11.9 0.1 3 19 1058 1074 1054 1078 0.93 Zinc-finger of C2H2 type zf-met PF12874.7 25 PRDM15-201 - 1507 7.9e-14 51.5 101.7 12 17 0.045 68 4.1 0.5 3 21 1086 1104 1084 1106 0.92 Zinc-finger of C2H2 type zf-met PF12874.7 25 PRDM15-201 - 1507 7.9e-14 51.5 101.7 13 17 8 1.2e+04 -3.1 0.2 3 20 1114 1131 1112 1132 0.82 Zinc-finger of C2H2 type zf-met PF12874.7 25 PRDM15-201 - 1507 7.9e-14 51.5 101.7 14 17 0.13 2e+02 2.6 3.0 1 20 1140 1159 1140 1160 0.93 Zinc-finger of C2H2 type zf-met PF12874.7 25 PRDM15-201 - 1507 7.9e-14 51.5 101.7 15 17 0.00012 0.18 12.2 0.3 1 19 1168 1186 1168 1190 0.95 Zinc-finger of C2H2 type zf-met PF12874.7 25 PRDM15-201 - 1507 7.9e-14 51.5 101.7 16 17 0.00035 0.53 10.8 0.9 1 21 1196 1216 1196 1216 0.95 Zinc-finger of C2H2 type zf-met PF12874.7 25 PRDM15-201 - 1507 7.9e-14 51.5 101.7 17 17 0.0034 5.1 7.6 0.2 3 21 1227 1245 1226 1245 0.95 Zinc-finger of C2H2 type # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/PRDM15-201.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/PRDM15-201.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/PRDM15-201.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/PRDM15-201.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/PRDM15-201.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:56:00 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-C2H2_4 PF13894.6 24 PRDM15-202 - 1178 4.3e-46 151.6 123.7 1 17 0.0011 1.4 9.9 0.1 2 23 235 256 234 257 0.91 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 PRDM15-202 - 1178 4.3e-46 151.6 123.7 2 17 6.6e-07 0.00085 20.0 0.5 1 23 409 431 409 432 0.97 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 PRDM15-202 - 1178 4.3e-46 151.6 123.7 3 17 7.3e-05 0.094 13.6 1.9 1 24 436 459 436 459 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 PRDM15-202 - 1178 4.3e-46 151.6 123.7 4 17 0.2 2.5e+02 2.9 0.3 1 19 470 488 470 488 0.83 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 PRDM15-202 - 1178 4.3e-46 151.6 123.7 5 17 1.5e-05 0.019 15.7 2.8 1 23 497 519 497 520 0.97 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 PRDM15-202 - 1178 4.3e-46 151.6 123.7 6 17 0.00014 0.18 12.7 0.8 1 23 524 546 524 547 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 PRDM15-202 - 1178 4.3e-46 151.6 123.7 7 17 1.1e-06 0.0014 19.3 1.1 3 23 575 595 574 596 0.97 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 PRDM15-202 - 1178 4.3e-46 151.6 123.7 8 17 0.00011 0.14 13.1 0.9 1 23 600 622 600 623 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 PRDM15-202 - 1178 4.3e-46 151.6 123.7 9 17 0.0031 3.9 8.6 0.5 1 24 663 686 663 686 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 PRDM15-202 - 1178 4.3e-46 151.6 123.7 10 17 0.00036 0.47 11.4 0.6 2 23 692 713 691 714 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 PRDM15-202 - 1178 4.3e-46 151.6 123.7 11 17 1.9e-05 0.024 15.5 0.1 1 23 727 749 727 750 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 PRDM15-202 - 1178 4.3e-46 151.6 123.7 12 17 1.2e-06 0.0016 19.1 0.7 1 23 755 777 755 778 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 PRDM15-202 - 1178 4.3e-46 151.6 123.7 13 17 3.4e-05 0.044 14.6 2.6 1 23 783 805 783 806 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 PRDM15-202 - 1178 4.3e-46 151.6 123.7 14 17 0.00021 0.27 12.2 5.6 1 23 811 833 811 834 0.97 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 PRDM15-202 - 1178 4.3e-46 151.6 123.7 15 17 2.7e-05 0.035 14.9 0.5 1 23 839 861 839 862 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 PRDM15-202 - 1178 4.3e-46 151.6 123.7 16 17 0.00017 0.22 12.5 0.6 2 24 868 890 867 890 0.91 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 PRDM15-202 - 1178 4.3e-46 151.6 123.7 17 17 9.1e-05 0.12 13.3 1.4 3 24 898 919 897 919 0.96 C2H2-type zinc finger zf-C2H2 PF00096.26 23 PRDM15-202 - 1178 4.1e-45 149.8 133.5 1 17 0.51 6.5e+02 1.1 0.0 3 23 236 256 234 256 0.87 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 PRDM15-202 - 1178 4.1e-45 149.8 133.5 2 17 4.9e-08 6.3e-05 23.2 1.2 1 23 409 431 409 431 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 PRDM15-202 - 1178 4.1e-45 149.8 133.5 3 17 2.9e-05 0.037 14.5 1.4 1 23 436 459 436 459 0.95 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 PRDM15-202 - 1178 4.1e-45 149.8 133.5 4 17 0.0089 11 6.6 1.0 1 16 470 485 470 490 0.87 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 PRDM15-202 - 1178 4.1e-45 149.8 133.5 5 17 4.1e-06 0.0052 17.2 4.5 1 23 497 519 497 519 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 PRDM15-202 - 1178 4.1e-45 149.8 133.5 6 17 4.7e-05 0.061 13.8 1.0 1 23 524 546 524 546 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 PRDM15-202 - 1178 4.1e-45 149.8 133.5 7 17 3e-05 0.038 14.4 2.5 3 23 575 595 575 595 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 PRDM15-202 - 1178 4.1e-45 149.8 133.5 8 17 2.5e-05 0.032 14.7 0.9 1 23 600 622 600 622 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 PRDM15-202 - 1178 4.1e-45 149.8 133.5 9 17 0.0018 2.4 8.8 0.6 1 23 663 686 663 686 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 PRDM15-202 - 1178 4.1e-45 149.8 133.5 10 17 0.0018 2.3 8.8 0.6 3 23 693 713 691 713 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 PRDM15-202 - 1178 4.1e-45 149.8 133.5 11 17 2.4e-06 0.0031 17.9 0.2 1 23 727 749 727 749 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 PRDM15-202 - 1178 4.1e-45 149.8 133.5 12 17 6.2e-09 8e-06 26.0 1.1 1 23 755 777 755 777 0.95 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 PRDM15-202 - 1178 4.1e-45 149.8 133.5 13 17 0.00012 0.15 12.6 2.9 1 23 783 805 783 805 0.95 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 PRDM15-202 - 1178 4.1e-45 149.8 133.5 14 17 0.0015 1.9 9.1 6.3 1 23 811 833 811 833 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 PRDM15-202 - 1178 4.1e-45 149.8 133.5 15 17 0.0001 0.13 12.8 0.6 1 23 839 861 839 861 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 PRDM15-202 - 1178 4.1e-45 149.8 133.5 16 17 3.7e-06 0.0047 17.3 0.4 2 23 868 890 867 890 0.95 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 PRDM15-202 - 1178 4.1e-45 149.8 133.5 17 17 0.00013 0.16 12.5 1.8 2 23 897 919 896 919 0.96 Zinc finger, C2H2 type zf-H2C2_2 PF13465.6 26 PRDM15-202 - 1178 6e-28 96.0 118.2 1 17 0.47 6e+02 1.2 0.1 13 24 232 243 226 244 0.82 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 PRDM15-202 - 1178 6e-28 96.0 118.2 2 17 0.083 1.1e+02 3.5 0.1 10 24 402 418 390 420 0.71 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 PRDM15-202 - 1178 6e-28 96.0 118.2 3 17 1.1e-06 0.0014 18.9 0.7 1 25 423 446 423 447 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 PRDM15-202 - 1178 6e-28 96.0 118.2 4 17 0.002 2.5 8.7 0.7 2 24 451 479 450 480 0.83 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 PRDM15-202 - 1178 6e-28 96.0 118.2 5 17 2.4 3e+03 -1.1 1.8 12 26 494 508 489 508 0.83 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 PRDM15-202 - 1178 6e-28 96.0 118.2 6 17 2.4e-05 0.031 14.7 3.4 1 24 511 533 511 535 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 PRDM15-202 - 1178 6e-28 96.0 118.2 7 17 0.15 1.9e+02 2.7 1.9 17 25 575 583 568 584 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 PRDM15-202 - 1178 6e-28 96.0 118.2 8 17 0.0002 0.26 11.8 1.0 1 24 587 609 587 611 0.86 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 PRDM15-202 - 1178 6e-28 96.0 118.2 9 17 0.0056 7.2 7.2 0.3 4 25 680 701 677 701 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 PRDM15-202 - 1178 6e-28 96.0 118.2 10 17 0.66 8.5e+02 0.7 0.2 5 25 709 737 707 738 0.64 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 PRDM15-202 - 1178 6e-28 96.0 118.2 11 17 1.1e-08 1.4e-05 25.2 0.5 1 25 741 765 741 766 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 PRDM15-202 - 1178 6e-28 96.0 118.2 12 17 2e-05 0.025 15.0 0.2 2 23 770 791 769 794 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 PRDM15-202 - 1178 6e-28 96.0 118.2 13 17 8.7e-08 0.00011 22.4 3.7 1 25 797 821 797 822 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 PRDM15-202 - 1178 6e-28 96.0 118.2 14 17 6.2e-07 0.00079 19.7 1.8 3 25 827 849 825 850 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 PRDM15-202 - 1178 6e-28 96.0 118.2 15 17 5.1e-06 0.0065 16.8 0.3 4 26 856 878 854 878 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 PRDM15-202 - 1178 6e-28 96.0 118.2 16 17 1.8 2.3e+03 -0.7 0.1 2 21 882 902 881 907 0.78 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 PRDM15-202 - 1178 6e-28 96.0 118.2 17 17 0.26 3.4e+02 1.9 0.5 2 10 911 920 910 922 0.75 Zinc-finger double domain zf-C2H2_jaz PF12171.8 27 PRDM15-202 - 1178 5.1e-19 68.0 92.4 1 18 0.013 16 5.9 0.0 1 24 233 256 233 257 0.90 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 PRDM15-202 - 1178 5.1e-19 68.0 92.4 2 18 2.8e-05 0.036 14.4 0.8 4 24 411 431 408 432 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 PRDM15-202 - 1178 5.1e-19 68.0 92.4 3 18 3.6e-05 0.046 14.0 0.5 2 21 436 455 435 456 0.95 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 PRDM15-202 - 1178 5.1e-19 68.0 92.4 4 18 0.016 20 5.6 0.1 2 20 470 488 469 489 0.91 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 PRDM15-202 - 1178 5.1e-19 68.0 92.4 5 18 0.13 1.6e+02 2.7 2.8 2 22 497 517 496 520 0.91 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 PRDM15-202 - 1178 5.1e-19 68.0 92.4 6 18 0.00057 0.73 10.2 0.5 1 22 523 544 523 544 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 PRDM15-202 - 1178 5.1e-19 68.0 92.4 7 18 0.055 71 3.9 0.4 4 23 575 594 575 596 0.91 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 PRDM15-202 - 1178 5.1e-19 68.0 92.4 8 18 0.0055 7 7.1 0.2 1 21 599 619 599 620 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 PRDM15-202 - 1178 5.1e-19 68.0 92.4 9 18 1.8 2.3e+03 -1.0 0.0 10 22 622 634 621 635 0.90 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 PRDM15-202 - 1178 5.1e-19 68.0 92.4 10 18 0.62 7.9e+02 0.5 0.2 1 21 662 682 662 682 0.91 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 PRDM15-202 - 1178 5.1e-19 68.0 92.4 11 18 0.1 1.3e+02 3.0 0.1 4 21 693 710 691 711 0.90 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 PRDM15-202 - 1178 5.1e-19 68.0 92.4 12 18 0.00076 0.97 9.8 0.0 3 21 728 746 726 747 0.91 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 PRDM15-202 - 1178 5.1e-19 68.0 92.4 13 18 0.0038 4.8 7.6 0.3 2 22 755 775 754 775 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 PRDM15-202 - 1178 5.1e-19 68.0 92.4 14 18 0.017 22 5.5 0.3 4 22 785 803 783 803 0.95 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 PRDM15-202 - 1178 5.1e-19 68.0 92.4 15 18 0.69 8.9e+02 0.4 4.5 2 22 811 831 810 831 0.88 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 PRDM15-202 - 1178 5.1e-19 68.0 92.4 16 18 5.3e-06 0.0068 16.7 0.1 2 21 839 858 838 859 0.95 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 PRDM15-202 - 1178 5.1e-19 68.0 92.4 17 18 3.9e-05 0.05 13.9 0.8 1 21 866 886 866 887 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 PRDM15-202 - 1178 5.1e-19 68.0 92.4 18 18 0.7 8.9e+02 0.4 0.0 4 22 898 916 897 916 0.91 Zinc-finger double-stranded RNA-binding zf-met PF12874.7 25 PRDM15-202 - 1178 1.3e-15 57.1 101.7 1 17 0.11 1.4e+02 3.0 0.1 1 10 234 243 234 256 0.74 Zinc-finger of C2H2 type zf-met PF12874.7 25 PRDM15-202 - 1178 1.3e-15 57.1 101.7 2 17 0.00013 0.16 12.4 2.4 1 23 409 431 409 431 0.96 Zinc-finger of C2H2 type zf-met PF12874.7 25 PRDM15-202 - 1178 1.3e-15 57.1 101.7 3 17 0.0079 10 6.7 0.5 1 20 436 455 436 456 0.94 Zinc-finger of C2H2 type zf-met PF12874.7 25 PRDM15-202 - 1178 1.3e-15 57.1 101.7 4 17 0.034 44 4.7 0.1 1 19 470 488 470 489 0.85 Zinc-finger of C2H2 type zf-met PF12874.7 25 PRDM15-202 - 1178 1.3e-15 57.1 101.7 5 17 0.99 1.3e+03 0.0 3.8 1 24 497 518 497 519 0.88 Zinc-finger of C2H2 type zf-met PF12874.7 25 PRDM15-202 - 1178 1.3e-15 57.1 101.7 6 17 0.00014 0.18 12.3 0.2 1 20 524 543 524 544 0.91 Zinc-finger of C2H2 type zf-met PF12874.7 25 PRDM15-202 - 1178 1.3e-15 57.1 101.7 7 17 0.0002 0.25 11.8 0.8 3 20 575 592 574 595 0.96 Zinc-finger of C2H2 type zf-met PF12874.7 25 PRDM15-202 - 1178 1.3e-15 57.1 101.7 8 17 0.0026 3.4 8.2 0.1 1 20 600 619 600 622 0.91 Zinc-finger of C2H2 type zf-met PF12874.7 25 PRDM15-202 - 1178 1.3e-15 57.1 101.7 9 17 0.44 5.7e+02 1.1 0.1 1 19 663 681 663 682 0.78 Zinc-finger of C2H2 type zf-met PF12874.7 25 PRDM15-202 - 1178 1.3e-15 57.1 101.7 10 17 0.0017 2.2 8.8 0.3 3 21 693 711 691 714 0.88 Zinc-finger of C2H2 type zf-met PF12874.7 25 PRDM15-202 - 1178 1.3e-15 57.1 101.7 11 17 0.00013 0.17 12.3 0.1 3 19 729 745 725 749 0.93 Zinc-finger of C2H2 type zf-met PF12874.7 25 PRDM15-202 - 1178 1.3e-15 57.1 101.7 12 17 0.04 52 4.4 0.5 3 21 757 775 755 777 0.92 Zinc-finger of C2H2 type zf-met PF12874.7 25 PRDM15-202 - 1178 1.3e-15 57.1 101.7 13 17 7.1 9.1e+03 -2.7 0.2 3 20 785 802 783 803 0.82 Zinc-finger of C2H2 type zf-met PF12874.7 25 PRDM15-202 - 1178 1.3e-15 57.1 101.7 14 17 0.12 1.5e+02 3.0 3.0 1 20 811 830 811 831 0.93 Zinc-finger of C2H2 type zf-met PF12874.7 25 PRDM15-202 - 1178 1.3e-15 57.1 101.7 15 17 0.00011 0.14 12.6 0.3 1 19 839 857 839 861 0.95 Zinc-finger of C2H2 type zf-met PF12874.7 25 PRDM15-202 - 1178 1.3e-15 57.1 101.7 16 17 0.00031 0.4 11.1 0.9 1 21 867 887 867 887 0.95 Zinc-finger of C2H2 type zf-met PF12874.7 25 PRDM15-202 - 1178 1.3e-15 57.1 101.7 17 17 0.0031 3.9 8.0 0.2 3 21 898 916 897 916 0.95 Zinc-finger of C2H2 type zf-C2H2_6 PF13912.6 27 PRDM15-202 - 1178 4.4e-07 29.7 108.4 1 17 0.00072 0.92 9.6 0.3 4 21 236 253 235 259 0.89 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 PRDM15-202 - 1178 4.4e-07 29.7 108.4 2 17 3.2 4.1e+03 -2.0 0.1 16 22 401 407 399 407 0.82 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 PRDM15-202 - 1178 4.4e-07 29.7 108.4 3 17 0.0025 3.2 7.9 0.4 1 24 408 431 408 434 0.84 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 PRDM15-202 - 1178 4.4e-07 29.7 108.4 4 17 0.058 74 3.5 1.7 2 20 436 454 435 461 0.80 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 PRDM15-202 - 1178 4.4e-07 29.7 108.4 5 17 0.0071 9.1 6.4 0.8 1 21 469 489 469 492 0.85 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 PRDM15-202 - 1178 4.4e-07 29.7 108.4 6 17 0.11 1.4e+02 2.6 2.8 2 24 497 519 496 522 0.92 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 PRDM15-202 - 1178 4.4e-07 29.7 108.4 7 17 0.07 90 3.2 0.4 2 24 524 546 523 548 0.82 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 PRDM15-202 - 1178 4.4e-07 29.7 108.4 8 17 0.002 2.5 8.2 1.1 4 24 575 595 574 598 0.88 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 PRDM15-202 - 1178 4.4e-07 29.7 108.4 9 17 0.062 79 3.4 0.1 2 20 600 618 599 618 0.90 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 PRDM15-202 - 1178 4.4e-07 29.7 108.4 10 17 0.93 1.2e+03 -0.3 0.6 2 15 663 676 662 681 0.88 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 PRDM15-202 - 1178 4.4e-07 29.7 108.4 11 17 0.014 19 5.4 0.1 2 11 691 700 691 701 0.91 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 PRDM15-202 - 1178 4.4e-07 29.7 108.4 12 17 0.00022 0.28 11.2 0.0 2 21 727 746 726 749 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 PRDM15-202 - 1178 4.4e-07 29.7 108.4 13 17 0.00023 0.3 11.1 0.8 2 24 755 777 754 778 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 PRDM15-202 - 1178 4.4e-07 29.7 108.4 14 17 0.018 24 5.1 3.2 2 25 783 806 783 808 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 PRDM15-202 - 1178 4.4e-07 29.7 108.4 15 17 0.0029 3.7 7.7 4.5 2 24 811 833 810 835 0.89 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 PRDM15-202 - 1178 4.4e-07 29.7 108.4 16 17 0.036 46 4.2 0.2 2 21 839 858 838 861 0.79 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 PRDM15-202 - 1178 4.4e-07 29.7 108.4 17 17 0.012 16 5.7 0.3 4 20 869 885 868 887 0.91 C2H2-type zinc finger # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/PRDM15-202.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/PRDM15-202.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/PRDM15-202.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/PRDM15-202.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/PRDM15-202.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:56:01 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-C2H2_4 PF13894.6 24 PRDM15-203 - 1198 5.9e-46 151.1 123.7 1 17 0.0011 1.5 9.9 0.1 2 23 235 256 234 257 0.91 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 PRDM15-203 - 1198 5.9e-46 151.1 123.7 2 17 6.7e-07 0.00086 19.9 0.5 1 23 409 431 409 432 0.97 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 PRDM15-203 - 1198 5.9e-46 151.1 123.7 3 17 7.5e-05 0.096 13.6 1.9 1 24 436 459 436 459 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 PRDM15-203 - 1198 5.9e-46 151.1 123.7 4 17 0.2 2.6e+02 2.9 0.3 1 19 470 488 470 488 0.83 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 PRDM15-203 - 1198 5.9e-46 151.1 123.7 5 17 1.5e-05 0.02 15.7 2.8 1 23 517 539 517 540 0.97 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 PRDM15-203 - 1198 5.9e-46 151.1 123.7 6 17 0.00015 0.19 12.7 0.8 1 23 544 566 544 567 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 PRDM15-203 - 1198 5.9e-46 151.1 123.7 7 17 1.1e-06 0.0014 19.3 1.1 3 23 595 615 594 616 0.97 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 PRDM15-203 - 1198 5.9e-46 151.1 123.7 8 17 0.00011 0.14 13.1 0.9 1 23 620 642 620 643 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 PRDM15-203 - 1198 5.9e-46 151.1 123.7 9 17 0.0031 4 8.5 0.5 1 24 683 706 683 706 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 PRDM15-203 - 1198 5.9e-46 151.1 123.7 10 17 0.00037 0.48 11.4 0.6 2 23 712 733 711 734 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 PRDM15-203 - 1198 5.9e-46 151.1 123.7 11 17 1.9e-05 0.024 15.4 0.1 1 23 747 769 747 770 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 PRDM15-203 - 1198 5.9e-46 151.1 123.7 12 17 1.2e-06 0.0016 19.1 0.7 1 23 775 797 775 798 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 PRDM15-203 - 1198 5.9e-46 151.1 123.7 13 17 3.5e-05 0.045 14.6 2.6 1 23 803 825 803 826 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 PRDM15-203 - 1198 5.9e-46 151.1 123.7 14 17 0.00022 0.28 12.2 5.6 1 23 831 853 831 854 0.97 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 PRDM15-203 - 1198 5.9e-46 151.1 123.7 15 17 2.8e-05 0.036 14.9 0.5 1 23 859 881 859 882 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 PRDM15-203 - 1198 5.9e-46 151.1 123.7 16 17 0.00017 0.22 12.4 0.6 2 24 888 910 887 910 0.91 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 PRDM15-203 - 1198 5.9e-46 151.1 123.7 17 17 9.2e-05 0.12 13.3 1.4 3 24 918 939 917 939 0.96 C2H2-type zinc finger zf-C2H2 PF00096.26 23 PRDM15-203 - 1198 5.6e-45 149.3 133.5 1 17 0.52 6.6e+02 1.1 0.0 3 23 236 256 234 256 0.87 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 PRDM15-203 - 1198 5.6e-45 149.3 133.5 2 17 5e-08 6.4e-05 23.2 1.2 1 23 409 431 409 431 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 PRDM15-203 - 1198 5.6e-45 149.3 133.5 3 17 2.9e-05 0.038 14.5 1.4 1 23 436 459 436 459 0.95 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 PRDM15-203 - 1198 5.6e-45 149.3 133.5 4 17 0.0091 12 6.6 1.0 1 16 470 485 470 490 0.87 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 PRDM15-203 - 1198 5.6e-45 149.3 133.5 5 17 4.2e-06 0.0053 17.1 4.5 1 23 517 539 517 539 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 PRDM15-203 - 1198 5.6e-45 149.3 133.5 6 17 4.8e-05 0.062 13.8 1.0 1 23 544 566 544 566 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 PRDM15-203 - 1198 5.6e-45 149.3 133.5 7 17 3.1e-05 0.039 14.4 2.5 3 23 595 615 595 615 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 PRDM15-203 - 1198 5.6e-45 149.3 133.5 8 17 2.6e-05 0.033 14.6 0.9 1 23 620 642 620 642 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 PRDM15-203 - 1198 5.6e-45 149.3 133.5 9 17 0.0019 2.4 8.8 0.6 1 23 683 706 683 706 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 PRDM15-203 - 1198 5.6e-45 149.3 133.5 10 17 0.0019 2.4 8.8 0.6 3 23 713 733 711 733 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 PRDM15-203 - 1198 5.6e-45 149.3 133.5 11 17 2.4e-06 0.0031 17.9 0.2 1 23 747 769 747 769 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 PRDM15-203 - 1198 5.6e-45 149.3 133.5 12 17 6.3e-09 8.1e-06 26.0 1.1 1 23 775 797 775 797 0.95 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 PRDM15-203 - 1198 5.6e-45 149.3 133.5 13 17 0.00012 0.15 12.5 2.9 1 23 803 825 803 825 0.95 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 PRDM15-203 - 1198 5.6e-45 149.3 133.5 14 17 0.0015 1.9 9.1 6.3 1 23 831 853 831 853 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 PRDM15-203 - 1198 5.6e-45 149.3 133.5 15 17 0.0001 0.13 12.7 0.6 1 23 859 881 859 881 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 PRDM15-203 - 1198 5.6e-45 149.3 133.5 16 17 3.8e-06 0.0048 17.3 0.4 2 23 888 910 887 910 0.95 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 PRDM15-203 - 1198 5.6e-45 149.3 133.5 17 17 0.00013 0.17 12.4 1.8 2 23 917 939 916 939 0.96 Zinc finger, C2H2 type zf-H2C2_2 PF13465.6 26 PRDM15-203 - 1198 1.6e-28 97.8 115.7 1 17 0.48 6.1e+02 1.1 0.1 13 24 232 243 226 244 0.82 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 PRDM15-203 - 1198 1.6e-28 97.8 115.7 2 17 0.084 1.1e+02 3.5 0.1 10 24 402 418 390 420 0.71 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 PRDM15-203 - 1198 1.6e-28 97.8 115.7 3 17 1.1e-06 0.0014 18.9 0.7 1 25 423 446 423 447 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 PRDM15-203 - 1198 1.6e-28 97.8 115.7 4 17 0.002 2.6 8.6 0.7 2 24 451 479 450 480 0.83 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 PRDM15-203 - 1198 1.6e-28 97.8 115.7 5 17 1.2 1.6e+03 -0.2 0.5 13 26 515 528 511 528 0.83 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 PRDM15-203 - 1198 1.6e-28 97.8 115.7 6 17 2.4e-05 0.031 14.7 3.4 1 24 531 553 531 555 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 PRDM15-203 - 1198 1.6e-28 97.8 115.7 7 17 0.15 2e+02 2.7 1.9 17 25 595 603 588 604 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 PRDM15-203 - 1198 1.6e-28 97.8 115.7 8 17 0.00021 0.27 11.8 1.0 1 24 607 629 607 631 0.86 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 PRDM15-203 - 1198 1.6e-28 97.8 115.7 9 17 0.0057 7.3 7.2 0.3 4 25 700 721 697 721 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 PRDM15-203 - 1198 1.6e-28 97.8 115.7 10 17 0.67 8.6e+02 0.7 0.2 5 25 729 757 727 758 0.64 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 PRDM15-203 - 1198 1.6e-28 97.8 115.7 11 17 1.1e-08 1.5e-05 25.2 0.5 1 25 761 785 761 786 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 PRDM15-203 - 1198 1.6e-28 97.8 115.7 12 17 2e-05 0.026 15.0 0.2 2 23 790 811 789 814 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 PRDM15-203 - 1198 1.6e-28 97.8 115.7 13 17 8.9e-08 0.00011 22.4 3.7 1 25 817 841 817 842 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 PRDM15-203 - 1198 1.6e-28 97.8 115.7 14 17 6.3e-07 0.00081 19.7 1.8 3 25 847 869 845 870 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 PRDM15-203 - 1198 1.6e-28 97.8 115.7 15 17 5.2e-06 0.0067 16.8 0.3 4 26 876 898 874 898 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 PRDM15-203 - 1198 1.6e-28 97.8 115.7 16 17 1.8 2.4e+03 -0.7 0.1 2 21 902 922 901 927 0.78 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 PRDM15-203 - 1198 1.6e-28 97.8 115.7 17 17 0.27 3.4e+02 1.9 0.5 2 10 931 940 930 942 0.75 Zinc-finger double domain zf-C2H2_jaz PF12171.8 27 PRDM15-203 - 1198 7.1e-19 67.6 92.4 1 18 0.013 16 5.9 0.0 1 24 233 256 233 257 0.90 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 PRDM15-203 - 1198 7.1e-19 67.6 92.4 2 18 2.8e-05 0.036 14.3 0.8 4 24 411 431 408 432 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 PRDM15-203 - 1198 7.1e-19 67.6 92.4 3 18 3.6e-05 0.047 14.0 0.5 2 21 436 455 435 456 0.95 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 PRDM15-203 - 1198 7.1e-19 67.6 92.4 4 18 0.016 21 5.6 0.1 2 20 470 488 469 489 0.91 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 PRDM15-203 - 1198 7.1e-19 67.6 92.4 5 18 0.13 1.7e+02 2.7 2.8 2 22 517 537 516 540 0.91 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 PRDM15-203 - 1198 7.1e-19 67.6 92.4 6 18 0.00058 0.75 10.2 0.5 1 22 543 564 543 564 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 PRDM15-203 - 1198 7.1e-19 67.6 92.4 7 18 0.056 72 3.8 0.4 4 23 595 614 595 616 0.91 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 PRDM15-203 - 1198 7.1e-19 67.6 92.4 8 18 0.0056 7.1 7.0 0.2 1 21 619 639 619 640 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 PRDM15-203 - 1198 7.1e-19 67.6 92.4 9 18 1.8 2.4e+03 -1.0 0.0 10 22 642 654 641 655 0.90 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 PRDM15-203 - 1198 7.1e-19 67.6 92.4 10 18 0.63 8.1e+02 0.5 0.2 1 21 682 702 682 702 0.91 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 PRDM15-203 - 1198 7.1e-19 67.6 92.4 11 18 0.11 1.4e+02 3.0 0.1 4 21 713 730 711 731 0.90 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 PRDM15-203 - 1198 7.1e-19 67.6 92.4 12 18 0.00077 0.99 9.8 0.0 3 21 748 766 746 767 0.91 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 PRDM15-203 - 1198 7.1e-19 67.6 92.4 13 18 0.0038 4.9 7.6 0.3 2 22 775 795 774 795 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 PRDM15-203 - 1198 7.1e-19 67.6 92.4 14 18 0.017 22 5.5 0.3 4 22 805 823 803 823 0.95 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 PRDM15-203 - 1198 7.1e-19 67.6 92.4 15 18 0.71 9e+02 0.3 4.5 2 22 831 851 830 851 0.88 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 PRDM15-203 - 1198 7.1e-19 67.6 92.4 16 18 5.4e-06 0.0069 16.6 0.1 2 21 859 878 858 879 0.95 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 PRDM15-203 - 1198 7.1e-19 67.6 92.4 17 18 4e-05 0.051 13.9 0.8 1 21 886 906 886 907 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 PRDM15-203 - 1198 7.1e-19 67.6 92.4 18 18 0.71 9.1e+02 0.3 0.0 4 22 918 936 917 936 0.91 Zinc-finger double-stranded RNA-binding zf-met PF12874.7 25 PRDM15-203 - 1198 1.8e-15 56.7 101.7 1 17 0.11 1.5e+02 3.0 0.1 1 10 234 243 234 256 0.74 Zinc-finger of C2H2 type zf-met PF12874.7 25 PRDM15-203 - 1198 1.8e-15 56.7 101.7 2 17 0.00013 0.17 12.4 2.4 1 23 409 431 409 431 0.96 Zinc-finger of C2H2 type zf-met PF12874.7 25 PRDM15-203 - 1198 1.8e-15 56.7 101.7 3 17 0.0081 10 6.7 0.5 1 20 436 455 436 456 0.94 Zinc-finger of C2H2 type zf-met PF12874.7 25 PRDM15-203 - 1198 1.8e-15 56.7 101.7 4 17 0.035 45 4.6 0.1 1 19 470 488 470 489 0.85 Zinc-finger of C2H2 type zf-met PF12874.7 25 PRDM15-203 - 1198 1.8e-15 56.7 101.7 5 17 1 1.3e+03 -0.0 3.8 1 24 517 538 517 539 0.88 Zinc-finger of C2H2 type zf-met PF12874.7 25 PRDM15-203 - 1198 1.8e-15 56.7 101.7 6 17 0.00014 0.18 12.2 0.2 1 20 544 563 544 564 0.91 Zinc-finger of C2H2 type zf-met PF12874.7 25 PRDM15-203 - 1198 1.8e-15 56.7 101.7 7 17 0.0002 0.25 11.8 0.8 3 20 595 612 594 615 0.96 Zinc-finger of C2H2 type zf-met PF12874.7 25 PRDM15-203 - 1198 1.8e-15 56.7 101.7 8 17 0.0027 3.5 8.2 0.1 1 20 620 639 620 642 0.91 Zinc-finger of C2H2 type zf-met PF12874.7 25 PRDM15-203 - 1198 1.8e-15 56.7 101.7 9 17 0.45 5.8e+02 1.1 0.1 1 19 683 701 683 702 0.78 Zinc-finger of C2H2 type zf-met PF12874.7 25 PRDM15-203 - 1198 1.8e-15 56.7 101.7 10 17 0.0018 2.3 8.8 0.3 3 21 713 731 711 734 0.88 Zinc-finger of C2H2 type zf-met PF12874.7 25 PRDM15-203 - 1198 1.8e-15 56.7 101.7 11 17 0.00014 0.17 12.3 0.1 3 19 749 765 745 769 0.93 Zinc-finger of C2H2 type zf-met PF12874.7 25 PRDM15-203 - 1198 1.8e-15 56.7 101.7 12 17 0.041 53 4.4 0.5 3 21 777 795 775 797 0.92 Zinc-finger of C2H2 type zf-met PF12874.7 25 PRDM15-203 - 1198 1.8e-15 56.7 101.7 13 17 7.3 9.3e+03 -2.7 0.2 3 20 805 822 803 823 0.82 Zinc-finger of C2H2 type zf-met PF12874.7 25 PRDM15-203 - 1198 1.8e-15 56.7 101.7 14 17 0.12 1.5e+02 2.9 3.0 1 20 831 850 831 851 0.93 Zinc-finger of C2H2 type zf-met PF12874.7 25 PRDM15-203 - 1198 1.8e-15 56.7 101.7 15 17 0.00011 0.14 12.6 0.3 1 19 859 877 859 881 0.95 Zinc-finger of C2H2 type zf-met PF12874.7 25 PRDM15-203 - 1198 1.8e-15 56.7 101.7 16 17 0.00032 0.41 11.1 0.9 1 21 887 907 887 907 0.95 Zinc-finger of C2H2 type zf-met PF12874.7 25 PRDM15-203 - 1198 1.8e-15 56.7 101.7 17 17 0.0031 4 8.0 0.2 3 21 918 936 917 936 0.95 Zinc-finger of C2H2 type zf-C2H2_6 PF13912.6 27 PRDM15-203 - 1198 5.9e-07 29.3 108.4 1 17 0.00073 0.93 9.6 0.3 4 21 236 253 235 259 0.89 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 PRDM15-203 - 1198 5.9e-07 29.3 108.4 2 17 3.2 4.2e+03 -2.1 0.1 16 22 401 407 399 407 0.82 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 PRDM15-203 - 1198 5.9e-07 29.3 108.4 3 17 0.0025 3.2 7.8 0.4 1 24 408 431 408 434 0.84 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 PRDM15-203 - 1198 5.9e-07 29.3 108.4 4 17 0.059 76 3.5 1.7 2 20 436 454 435 461 0.80 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 PRDM15-203 - 1198 5.9e-07 29.3 108.4 5 17 0.0073 9.3 6.4 0.8 1 21 469 489 469 492 0.85 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 PRDM15-203 - 1198 5.9e-07 29.3 108.4 6 17 0.11 1.5e+02 2.6 2.8 2 24 517 539 516 542 0.92 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 PRDM15-203 - 1198 5.9e-07 29.3 108.4 7 17 0.071 91 3.2 0.4 2 24 544 566 543 568 0.82 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 PRDM15-203 - 1198 5.9e-07 29.3 108.4 8 17 0.002 2.6 8.2 1.1 4 24 595 615 594 618 0.88 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 PRDM15-203 - 1198 5.9e-07 29.3 108.4 9 17 0.063 80 3.4 0.1 2 20 620 638 619 638 0.90 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 PRDM15-203 - 1198 5.9e-07 29.3 108.4 10 17 0.95 1.2e+03 -0.4 0.6 2 15 683 696 682 701 0.88 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 PRDM15-203 - 1198 5.9e-07 29.3 108.4 11 17 0.015 19 5.4 0.1 2 11 711 720 711 721 0.91 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 PRDM15-203 - 1198 5.9e-07 29.3 108.4 12 17 0.00022 0.29 11.2 0.0 2 21 747 766 746 769 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 PRDM15-203 - 1198 5.9e-07 29.3 108.4 13 17 0.00024 0.3 11.1 0.8 2 24 775 797 774 798 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 PRDM15-203 - 1198 5.9e-07 29.3 108.4 14 17 0.019 24 5.1 3.2 2 25 803 826 803 828 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 PRDM15-203 - 1198 5.9e-07 29.3 108.4 15 17 0.0029 3.8 7.6 4.5 2 24 831 853 830 855 0.89 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 PRDM15-203 - 1198 5.9e-07 29.3 108.4 16 17 0.037 47 4.1 0.2 2 21 859 878 858 881 0.79 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 PRDM15-203 - 1198 5.9e-07 29.3 108.4 17 17 0.012 16 5.6 0.3 4 20 889 905 888 907 0.91 C2H2-type zinc finger # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/PRDM15-203.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/PRDM15-203.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/PRDM15-203.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/PRDM15-203.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/PRDM15-203.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:56:01 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-C2H2 PF00096.26 23 PRDM15-204 - 1507 3e-43 143.9 133.5 1 17 0.57 8.5e+02 0.8 0.0 3 23 565 585 563 585 0.87 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 PRDM15-204 - 1507 3e-43 143.9 133.5 2 17 5.5e-08 8.2e-05 22.8 1.2 1 23 738 760 738 760 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 PRDM15-204 - 1507 3e-43 143.9 133.5 3 17 3.3e-05 0.049 14.1 1.4 1 23 765 788 765 788 0.95 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 PRDM15-204 - 1507 3e-43 143.9 133.5 4 17 0.01 15 6.3 1.0 1 16 799 814 799 819 0.87 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 PRDM15-204 - 1507 3e-43 143.9 133.5 5 17 4.6e-06 0.0069 16.8 4.5 1 23 826 848 826 848 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 PRDM15-204 - 1507 3e-43 143.9 133.5 6 17 5.3e-05 0.08 13.4 1.0 1 23 853 875 853 875 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 PRDM15-204 - 1507 3e-43 143.9 133.5 7 17 3.4e-05 0.05 14.1 2.5 3 23 904 924 904 924 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 PRDM15-204 - 1507 3e-43 143.9 133.5 8 17 2.8e-05 0.042 14.3 0.9 1 23 929 951 929 951 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 PRDM15-204 - 1507 3e-43 143.9 133.5 9 17 0.0021 3.1 8.4 0.6 1 23 992 1015 992 1015 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 PRDM15-204 - 1507 3e-43 143.9 133.5 10 17 0.002 3.1 8.5 0.6 3 23 1022 1042 1020 1042 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 PRDM15-204 - 1507 3e-43 143.9 133.5 11 17 2.7e-06 0.004 17.5 0.2 1 23 1056 1078 1056 1078 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 PRDM15-204 - 1507 3e-43 143.9 133.5 12 17 7e-09 1e-05 25.7 1.1 1 23 1084 1106 1084 1106 0.95 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 PRDM15-204 - 1507 3e-43 143.9 133.5 13 17 0.00013 0.2 12.2 2.9 1 23 1112 1134 1112 1134 0.95 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 PRDM15-204 - 1507 3e-43 143.9 133.5 14 17 0.0017 2.5 8.7 6.3 1 23 1140 1162 1140 1162 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 PRDM15-204 - 1507 3e-43 143.9 133.5 15 17 0.00011 0.17 12.4 0.6 1 23 1168 1190 1168 1190 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 PRDM15-204 - 1507 3e-43 143.9 133.5 16 17 4.2e-06 0.0062 16.9 0.4 2 23 1197 1219 1196 1219 0.95 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 PRDM15-204 - 1507 3e-43 143.9 133.5 17 17 0.00014 0.21 12.1 1.8 2 23 1226 1248 1225 1248 0.96 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 PRDM15-204 - 1507 2.3e-42 140.0 130.3 1 18 7.7 1.1e+04 -2.2 0.5 3 11 248 256 247 259 0.79 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 PRDM15-204 - 1507 2.3e-42 140.0 130.3 2 18 0.0013 1.9 9.6 0.1 2 23 564 585 563 586 0.91 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 PRDM15-204 - 1507 2.3e-42 140.0 130.3 3 18 7.5e-07 0.0011 19.6 0.5 1 23 738 760 738 761 0.97 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 PRDM15-204 - 1507 2.3e-42 140.0 130.3 4 18 8.3e-05 0.12 13.2 1.9 1 24 765 788 765 788 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 PRDM15-204 - 1507 2.3e-42 140.0 130.3 5 18 0.22 3.3e+02 2.6 0.3 1 19 799 817 799 817 0.83 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 PRDM15-204 - 1507 2.3e-42 140.0 130.3 6 18 1.7e-05 0.025 15.4 2.8 1 23 826 848 826 849 0.97 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 PRDM15-204 - 1507 2.3e-42 140.0 130.3 7 18 0.00016 0.24 12.3 0.8 1 23 853 875 853 876 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 PRDM15-204 - 1507 2.3e-42 140.0 130.3 8 18 1.2e-06 0.0018 19.0 1.1 3 23 904 924 903 925 0.97 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 PRDM15-204 - 1507 2.3e-42 140.0 130.3 9 18 0.00012 0.18 12.7 0.9 1 23 929 951 929 952 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 PRDM15-204 - 1507 2.3e-42 140.0 130.3 10 18 0.0035 5.2 8.2 0.5 1 24 992 1015 992 1015 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 PRDM15-204 - 1507 2.3e-42 140.0 130.3 11 18 0.00041 0.62 11.1 0.6 2 23 1021 1042 1020 1043 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 PRDM15-204 - 1507 2.3e-42 140.0 130.3 12 18 2.1e-05 0.031 15.1 0.1 1 23 1056 1078 1056 1079 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 PRDM15-204 - 1507 2.3e-42 140.0 130.3 13 18 1.4e-06 0.0021 18.8 0.7 1 23 1084 1106 1084 1107 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 PRDM15-204 - 1507 2.3e-42 140.0 130.3 14 18 3.9e-05 0.058 14.3 2.6 1 23 1112 1134 1112 1135 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 PRDM15-204 - 1507 2.3e-42 140.0 130.3 15 18 0.00024 0.36 11.8 5.6 1 23 1140 1162 1140 1163 0.97 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 PRDM15-204 - 1507 2.3e-42 140.0 130.3 16 18 3.1e-05 0.046 14.6 0.5 1 23 1168 1190 1168 1191 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 PRDM15-204 - 1507 2.3e-42 140.0 130.3 17 18 0.00019 0.29 12.1 0.6 2 24 1197 1219 1196 1219 0.91 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 PRDM15-204 - 1507 2.3e-42 140.0 130.3 18 18 0.0001 0.15 12.9 1.4 3 24 1227 1248 1226 1248 0.96 C2H2-type zinc finger zf-H2C2_2 PF13465.6 26 PRDM15-204 - 1507 3.4e-28 96.8 111.5 1 17 0.52 7.8e+02 0.8 0.1 13 24 561 572 555 573 0.82 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 PRDM15-204 - 1507 3.4e-28 96.8 111.5 2 17 0.093 1.4e+02 3.2 0.1 10 24 731 747 719 749 0.71 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 PRDM15-204 - 1507 3.4e-28 96.8 111.5 3 17 1.2e-06 0.0019 18.6 0.7 1 25 752 775 752 776 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 PRDM15-204 - 1507 3.4e-28 96.8 111.5 4 17 0.0022 3.3 8.3 0.7 2 24 780 808 779 809 0.83 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 PRDM15-204 - 1507 3.4e-28 96.8 111.5 5 17 2.7 4e+03 -1.4 1.8 12 26 823 837 818 837 0.83 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 PRDM15-204 - 1507 3.4e-28 96.8 111.5 6 17 2.7e-05 0.04 14.4 3.4 1 24 840 862 840 864 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 PRDM15-204 - 1507 3.4e-28 96.8 111.5 7 17 0.17 2.5e+02 2.4 1.9 17 25 904 912 897 913 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 PRDM15-204 - 1507 3.4e-28 96.8 111.5 8 17 0.00023 0.34 11.4 1.0 1 24 916 938 916 940 0.86 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 PRDM15-204 - 1507 3.4e-28 96.8 111.5 9 17 0.0063 9.5 6.9 0.3 4 25 1009 1030 1006 1030 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 PRDM15-204 - 1507 3.4e-28 96.8 111.5 10 17 0.74 1.1e+03 0.3 0.2 5 25 1038 1066 1036 1067 0.64 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 PRDM15-204 - 1507 3.4e-28 96.8 111.5 11 17 1.3e-08 1.9e-05 24.9 0.5 1 25 1070 1094 1070 1095 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 PRDM15-204 - 1507 3.4e-28 96.8 111.5 12 17 2.2e-05 0.033 14.6 0.2 2 23 1099 1120 1098 1123 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 PRDM15-204 - 1507 3.4e-28 96.8 111.5 13 17 9.8e-08 0.00015 22.1 3.7 1 25 1126 1150 1126 1151 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 PRDM15-204 - 1507 3.4e-28 96.8 111.5 14 17 7e-07 0.001 19.4 1.8 3 25 1156 1178 1154 1179 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 PRDM15-204 - 1507 3.4e-28 96.8 111.5 15 17 5.7e-06 0.0086 16.5 0.3 4 26 1185 1207 1183 1207 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 PRDM15-204 - 1507 3.4e-28 96.8 111.5 16 17 2 3e+03 -1.1 0.1 2 21 1211 1231 1210 1236 0.78 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 PRDM15-204 - 1507 3.4e-28 96.8 111.5 17 17 0.29 4.4e+02 1.6 0.5 2 10 1240 1249 1239 1251 0.75 Zinc-finger double domain zf-C2H2_jaz PF12171.8 27 PRDM15-204 - 1507 4.3e-17 61.9 92.4 1 18 0.014 21 5.5 0.0 1 24 562 585 562 586 0.90 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 PRDM15-204 - 1507 4.3e-17 61.9 92.4 2 18 3.1e-05 0.047 14.0 0.8 4 24 740 760 737 761 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 PRDM15-204 - 1507 4.3e-17 61.9 92.4 3 18 4e-05 0.06 13.7 0.5 2 21 765 784 764 785 0.95 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 PRDM15-204 - 1507 4.3e-17 61.9 92.4 4 18 0.018 26 5.2 0.1 2 20 799 817 798 818 0.90 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 PRDM15-204 - 1507 4.3e-17 61.9 92.4 5 18 0.14 2.1e+02 2.3 2.8 2 22 826 846 825 849 0.91 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 PRDM15-204 - 1507 4.3e-17 61.9 92.4 6 18 0.00064 0.96 9.8 0.5 1 22 852 873 852 873 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 PRDM15-204 - 1507 4.3e-17 61.9 92.4 7 18 0.062 92 3.5 0.4 4 23 904 923 904 925 0.91 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 PRDM15-204 - 1507 4.3e-17 61.9 92.4 8 18 0.0061 9.2 6.7 0.2 1 21 928 948 928 949 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 PRDM15-204 - 1507 4.3e-17 61.9 92.4 9 18 2 3e+03 -1.3 0.0 10 22 951 963 950 964 0.90 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 PRDM15-204 - 1507 4.3e-17 61.9 92.4 10 18 0.7 1e+03 0.1 0.2 1 21 991 1011 991 1011 0.91 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 PRDM15-204 - 1507 4.3e-17 61.9 92.4 11 18 0.12 1.7e+02 2.6 0.1 4 21 1022 1039 1020 1040 0.90 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 PRDM15-204 - 1507 4.3e-17 61.9 92.4 12 18 0.00085 1.3 9.4 0.0 3 21 1057 1075 1055 1076 0.91 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 PRDM15-204 - 1507 4.3e-17 61.9 92.4 13 18 0.0042 6.3 7.2 0.3 2 22 1084 1104 1083 1104 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 PRDM15-204 - 1507 4.3e-17 61.9 92.4 14 18 0.019 28 5.1 0.3 4 22 1114 1132 1112 1132 0.95 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 PRDM15-204 - 1507 4.3e-17 61.9 92.4 15 18 0.78 1.2e+03 -0.0 4.5 2 22 1140 1160 1139 1160 0.87 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 PRDM15-204 - 1507 4.3e-17 61.9 92.4 16 18 5.9e-06 0.0089 16.3 0.1 2 21 1168 1187 1167 1188 0.95 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 PRDM15-204 - 1507 4.3e-17 61.9 92.4 17 18 4.4e-05 0.066 13.5 0.8 1 21 1195 1215 1195 1216 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 PRDM15-204 - 1507 4.3e-17 61.9 92.4 18 18 0.78 1.2e+03 -0.0 0.0 4 22 1227 1245 1226 1245 0.91 Zinc-finger double-stranded RNA-binding zf-met PF12874.7 25 PRDM15-204 - 1507 7.9e-14 51.5 101.7 1 17 0.13 1.9e+02 2.6 0.1 1 10 563 572 563 585 0.74 Zinc-finger of C2H2 type zf-met PF12874.7 25 PRDM15-204 - 1507 7.9e-14 51.5 101.7 2 17 0.00014 0.21 12.0 2.4 1 23 738 760 738 760 0.96 Zinc-finger of C2H2 type zf-met PF12874.7 25 PRDM15-204 - 1507 7.9e-14 51.5 101.7 3 17 0.0089 13 6.3 0.5 1 20 765 784 765 785 0.94 Zinc-finger of C2H2 type zf-met PF12874.7 25 PRDM15-204 - 1507 7.9e-14 51.5 101.7 4 17 0.038 57 4.3 0.1 1 19 799 817 799 818 0.85 Zinc-finger of C2H2 type zf-met PF12874.7 25 PRDM15-204 - 1507 7.9e-14 51.5 101.7 5 17 1.1 1.7e+03 -0.4 3.8 1 24 826 847 826 848 0.88 Zinc-finger of C2H2 type zf-met PF12874.7 25 PRDM15-204 - 1507 7.9e-14 51.5 101.7 6 17 0.00016 0.23 11.9 0.2 1 20 853 872 853 873 0.91 Zinc-finger of C2H2 type zf-met PF12874.7 25 PRDM15-204 - 1507 7.9e-14 51.5 101.7 7 17 0.00022 0.33 11.4 0.8 3 20 904 921 903 924 0.96 Zinc-finger of C2H2 type zf-met PF12874.7 25 PRDM15-204 - 1507 7.9e-14 51.5 101.7 8 17 0.003 4.4 7.8 0.1 1 20 929 948 929 951 0.91 Zinc-finger of C2H2 type zf-met PF12874.7 25 PRDM15-204 - 1507 7.9e-14 51.5 101.7 9 17 0.5 7.4e+02 0.8 0.1 1 19 992 1010 992 1011 0.78 Zinc-finger of C2H2 type zf-met PF12874.7 25 PRDM15-204 - 1507 7.9e-14 51.5 101.7 10 17 0.0019 2.9 8.4 0.3 3 21 1022 1040 1020 1043 0.88 Zinc-finger of C2H2 type zf-met PF12874.7 25 PRDM15-204 - 1507 7.9e-14 51.5 101.7 11 17 0.00015 0.22 11.9 0.1 3 19 1058 1074 1054 1078 0.93 Zinc-finger of C2H2 type zf-met PF12874.7 25 PRDM15-204 - 1507 7.9e-14 51.5 101.7 12 17 0.045 68 4.1 0.5 3 21 1086 1104 1084 1106 0.92 Zinc-finger of C2H2 type zf-met PF12874.7 25 PRDM15-204 - 1507 7.9e-14 51.5 101.7 13 17 8 1.2e+04 -3.1 0.2 3 20 1114 1131 1112 1132 0.82 Zinc-finger of C2H2 type zf-met PF12874.7 25 PRDM15-204 - 1507 7.9e-14 51.5 101.7 14 17 0.13 2e+02 2.6 3.0 1 20 1140 1159 1140 1160 0.93 Zinc-finger of C2H2 type zf-met PF12874.7 25 PRDM15-204 - 1507 7.9e-14 51.5 101.7 15 17 0.00012 0.18 12.2 0.3 1 19 1168 1186 1168 1190 0.95 Zinc-finger of C2H2 type zf-met PF12874.7 25 PRDM15-204 - 1507 7.9e-14 51.5 101.7 16 17 0.00035 0.53 10.8 0.9 1 21 1196 1216 1196 1216 0.95 Zinc-finger of C2H2 type zf-met PF12874.7 25 PRDM15-204 - 1507 7.9e-14 51.5 101.7 17 17 0.0034 5.1 7.6 0.2 3 21 1227 1245 1226 1245 0.95 Zinc-finger of C2H2 type # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/PRDM15-204.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/PRDM15-204.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/PRDM15-204.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/PRDM15-204.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/PRDM15-204.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:56:02 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-C2H2_4 PF13894.6 24 PRDM15-205 - 647 6e-33 110.7 85.5 1 12 4.3 5.5e+03 -1.2 0.3 12 23 4 15 1 16 0.74 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 PRDM15-205 - 647 6e-33 110.7 85.5 2 12 5.3e-07 0.00068 20.3 1.1 3 23 44 64 43 65 0.97 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 PRDM15-205 - 647 6e-33 110.7 85.5 3 12 5.4e-05 0.069 14.0 0.9 1 23 69 91 69 92 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 PRDM15-205 - 647 6e-33 110.7 85.5 4 12 0.0015 2 9.5 0.5 1 24 132 155 132 155 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 PRDM15-205 - 647 6e-33 110.7 85.5 5 12 0.00018 0.23 12.4 0.6 2 23 161 182 160 183 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 PRDM15-205 - 647 6e-33 110.7 85.5 6 12 9.3e-06 0.012 16.4 0.1 1 23 196 218 196 219 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 PRDM15-205 - 647 6e-33 110.7 85.5 7 12 6.1e-07 0.00079 20.1 0.7 1 23 224 246 224 247 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 PRDM15-205 - 647 6e-33 110.7 85.5 8 12 1.7e-05 0.022 15.6 2.6 1 23 252 274 252 275 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 PRDM15-205 - 647 6e-33 110.7 85.5 9 12 0.00011 0.14 13.1 5.6 1 23 280 302 280 303 0.97 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 PRDM15-205 - 647 6e-33 110.7 85.5 10 12 1.4e-05 0.017 15.9 0.5 1 23 308 330 308 331 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 PRDM15-205 - 647 6e-33 110.7 85.5 11 12 8.6e-05 0.11 13.4 0.6 2 24 337 359 336 359 0.91 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 PRDM15-205 - 647 6e-33 110.7 85.5 12 12 4.5e-05 0.058 14.3 1.4 3 24 367 388 366 388 0.96 C2H2-type zinc finger zf-C2H2 PF00096.26 23 PRDM15-205 - 647 2.5e-32 109.5 91.2 1 12 0.95 1.2e+03 0.3 0.4 10 23 2 15 1 15 0.87 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 PRDM15-205 - 647 2.5e-32 109.5 91.2 2 12 1.5e-05 0.019 15.4 2.5 3 23 44 64 44 64 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 PRDM15-205 - 647 2.5e-32 109.5 91.2 3 12 1.3e-05 0.016 15.6 0.9 1 23 69 91 69 91 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 PRDM15-205 - 647 2.5e-32 109.5 91.2 4 12 0.00093 1.2 9.7 0.6 1 23 132 155 132 155 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 PRDM15-205 - 647 2.5e-32 109.5 91.2 5 12 0.00092 1.2 9.8 0.6 3 23 162 182 160 182 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 PRDM15-205 - 647 2.5e-32 109.5 91.2 6 12 1.2e-06 0.0015 18.8 0.2 1 23 196 218 196 218 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 PRDM15-205 - 647 2.5e-32 109.5 91.2 7 12 3.1e-09 4e-06 27.0 1.1 1 23 224 246 224 246 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 PRDM15-205 - 647 2.5e-32 109.5 91.2 8 12 5.9e-05 0.076 13.5 2.9 1 23 252 274 252 274 0.95 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 PRDM15-205 - 647 2.5e-32 109.5 91.2 9 12 0.00075 0.96 10.0 6.3 1 23 280 302 280 302 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 PRDM15-205 - 647 2.5e-32 109.5 91.2 10 12 5.1e-05 0.066 13.7 0.6 1 23 308 330 308 330 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 PRDM15-205 - 647 2.5e-32 109.5 91.2 11 12 1.9e-06 0.0024 18.2 0.4 2 23 337 359 336 359 0.95 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 PRDM15-205 - 647 2.5e-32 109.5 91.2 12 12 6.4e-05 0.082 13.4 1.8 2 23 366 388 365 388 0.96 Zinc finger, C2H2 type zf-H2C2_2 PF13465.6 26 PRDM15-205 - 647 1.2e-21 76.1 85.8 1 12 0.06 77 4.0 1.5 17 25 44 52 36 53 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 PRDM15-205 - 647 1.2e-21 76.1 85.8 2 12 0.0001 0.13 12.7 1.0 1 24 56 78 56 80 0.86 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 PRDM15-205 - 647 1.2e-21 76.1 85.8 3 12 7.6 9.8e+03 -2.7 0.4 14 25 131 142 128 143 0.76 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 PRDM15-205 - 647 1.2e-21 76.1 85.8 4 12 0.0028 3.6 8.2 0.3 4 25 149 170 146 170 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 PRDM15-205 - 647 1.2e-21 76.1 85.8 5 12 0.32 4.1e+02 1.7 0.2 5 25 178 206 175 207 0.66 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 PRDM15-205 - 647 1.2e-21 76.1 85.8 6 12 5.7e-09 7.3e-06 26.2 0.5 1 25 210 234 210 235 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 PRDM15-205 - 647 1.2e-21 76.1 85.8 7 12 1e-05 0.013 15.9 0.2 2 23 239 260 238 263 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 PRDM15-205 - 647 1.2e-21 76.1 85.8 8 12 4.4e-08 5.6e-05 23.4 3.7 1 25 266 290 266 291 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 PRDM15-205 - 647 1.2e-21 76.1 85.8 9 12 3.1e-07 0.0004 20.7 1.8 3 25 296 318 294 319 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 PRDM15-205 - 647 1.2e-21 76.1 85.8 10 12 2.6e-06 0.0033 17.8 0.3 4 26 325 347 323 347 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 PRDM15-205 - 647 1.2e-21 76.1 85.8 11 12 0.91 1.2e+03 0.2 0.1 2 21 351 371 350 376 0.78 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 PRDM15-205 - 647 1.2e-21 76.1 85.8 12 12 0.14 1.8e+02 2.8 0.5 2 10 380 389 379 391 0.75 Zinc-finger double domain zf-met PF12874.7 25 PRDM15-205 - 647 1.2e-14 54.1 59.1 1 11 0.0001 0.13 12.7 0.8 3 20 44 61 43 64 0.96 Zinc-finger of C2H2 type zf-met PF12874.7 25 PRDM15-205 - 647 1.2e-14 54.1 59.1 2 11 0.0013 1.6 9.2 0.1 1 20 69 88 69 101 0.94 Zinc-finger of C2H2 type zf-met PF12874.7 25 PRDM15-205 - 647 1.2e-14 54.1 59.1 3 11 0.23 2.9e+02 2.0 0.1 1 19 132 150 132 151 0.78 Zinc-finger of C2H2 type zf-met PF12874.7 25 PRDM15-205 - 647 1.2e-14 54.1 59.1 4 11 0.00088 1.1 9.7 0.3 3 21 162 180 160 183 0.88 Zinc-finger of C2H2 type zf-met PF12874.7 25 PRDM15-205 - 647 1.2e-14 54.1 59.1 5 11 6.8e-05 0.087 13.2 0.1 3 19 198 214 194 218 0.93 Zinc-finger of C2H2 type zf-met PF12874.7 25 PRDM15-205 - 647 1.2e-14 54.1 59.1 6 11 0.021 26 5.4 0.5 3 21 226 244 224 246 0.92 Zinc-finger of C2H2 type zf-met PF12874.7 25 PRDM15-205 - 647 1.2e-14 54.1 59.1 7 11 3.7 4.7e+03 -1.8 0.2 3 20 254 271 252 272 0.82 Zinc-finger of C2H2 type zf-met PF12874.7 25 PRDM15-205 - 647 1.2e-14 54.1 59.1 8 11 0.06 77 3.9 3.0 1 20 280 299 280 300 0.93 Zinc-finger of C2H2 type zf-met PF12874.7 25 PRDM15-205 - 647 1.2e-14 54.1 59.1 9 11 5.5e-05 0.07 13.5 0.3 1 19 308 326 308 330 0.95 Zinc-finger of C2H2 type zf-met PF12874.7 25 PRDM15-205 - 647 1.2e-14 54.1 59.1 10 11 0.00016 0.21 12.1 0.9 1 21 336 356 336 356 0.95 Zinc-finger of C2H2 type zf-met PF12874.7 25 PRDM15-205 - 647 1.2e-14 54.1 59.1 11 11 0.0016 2 8.9 0.2 3 21 367 385 366 385 0.95 Zinc-finger of C2H2 type zf-C2H2_jaz PF12171.8 27 PRDM15-205 - 647 4.9e-14 52.2 52.2 1 12 0.028 36 4.8 0.4 4 23 44 63 44 65 0.91 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 PRDM15-205 - 647 4.9e-14 52.2 52.2 2 12 0.0025 3.3 8.1 0.0 1 21 68 88 68 89 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 PRDM15-205 - 647 4.9e-14 52.2 52.2 3 12 0.76 9.7e+02 0.2 0.0 10 22 91 103 89 104 0.89 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 PRDM15-205 - 647 4.9e-14 52.2 52.2 4 12 0.32 4.1e+02 1.4 0.2 1 21 131 151 131 151 0.91 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 PRDM15-205 - 647 4.9e-14 52.2 52.2 5 12 0.054 69 3.9 0.1 4 21 162 179 160 180 0.90 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 PRDM15-205 - 647 4.9e-14 52.2 52.2 6 12 0.00039 0.5 10.7 0.0 3 21 197 215 195 216 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 PRDM15-205 - 647 4.9e-14 52.2 52.2 7 12 0.0019 2.5 8.5 0.3 2 22 224 244 223 244 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 PRDM15-205 - 647 4.9e-14 52.2 52.2 8 12 0.0086 11 6.4 0.3 4 22 254 272 252 272 0.95 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 PRDM15-205 - 647 4.9e-14 52.2 52.2 9 12 0.36 4.6e+02 1.3 4.5 2 22 280 300 279 300 0.88 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 PRDM15-205 - 647 4.9e-14 52.2 52.2 10 12 2.7e-06 0.0035 17.6 0.1 2 21 308 327 307 328 0.95 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 PRDM15-205 - 647 4.9e-14 52.2 52.2 11 12 2e-05 0.026 14.8 0.8 1 21 335 355 335 356 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 PRDM15-205 - 647 4.9e-14 52.2 52.2 12 12 0.36 4.6e+02 1.3 0.0 4 22 367 385 366 385 0.91 Zinc-finger double-stranded RNA-binding zf-C2H2_6 PF13912.6 27 PRDM15-205 - 647 6e-08 32.5 65.8 1 10 0.001 1.3 9.1 1.1 4 24 44 64 43 67 0.89 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 PRDM15-205 - 647 6e-08 32.5 65.8 2 10 0.029 38 4.4 0.0 2 20 69 87 68 88 0.91 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 PRDM15-205 - 647 6e-08 32.5 65.8 3 10 0.48 6.2e+02 0.6 0.6 2 15 132 145 131 150 0.88 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 PRDM15-205 - 647 6e-08 32.5 65.8 4 10 0.0076 9.7 6.3 0.1 2 11 160 169 160 170 0.91 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 PRDM15-205 - 647 6e-08 32.5 65.8 5 10 0.00011 0.14 12.2 0.0 2 21 196 215 195 218 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 PRDM15-205 - 647 6e-08 32.5 65.8 6 10 0.00012 0.15 12.1 0.8 2 24 224 246 223 247 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 PRDM15-205 - 647 6e-08 32.5 65.8 7 10 0.0093 12 6.0 3.2 2 25 252 275 252 277 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 PRDM15-205 - 647 6e-08 32.5 65.8 8 10 0.0015 1.9 8.6 4.6 2 24 280 302 279 304 0.89 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 PRDM15-205 - 647 6e-08 32.5 65.8 9 10 0.019 24 5.1 0.2 2 21 308 327 307 330 0.79 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 PRDM15-205 - 647 6e-08 32.5 65.8 10 10 0.0063 8 6.6 0.3 4 20 338 354 337 356 0.91 C2H2-type zinc finger # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/PRDM15-205.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/PRDM15-205.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/PRDM15-205.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/PRDM15-205.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/PRDM15-205.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:56:02 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-C2H2_4 PF13894.6 24 PRDM15-206 - 1141 2.5e-46 152.3 123.7 1 17 0.001 1.4 10.0 0.1 2 23 198 219 197 220 0.91 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 PRDM15-206 - 1141 2.5e-46 152.3 123.7 2 17 5.9e-07 0.00082 20.0 0.5 1 23 372 394 372 395 0.97 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 PRDM15-206 - 1141 2.5e-46 152.3 123.7 3 17 6.6e-05 0.091 13.7 1.9 1 24 399 422 399 422 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 PRDM15-206 - 1141 2.5e-46 152.3 123.7 4 17 0.18 2.4e+02 3.0 0.3 1 19 433 451 433 451 0.83 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 PRDM15-206 - 1141 2.5e-46 152.3 123.7 5 17 1.3e-05 0.019 15.8 2.8 1 23 460 482 460 483 0.97 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 PRDM15-206 - 1141 2.5e-46 152.3 123.7 6 17 0.00013 0.18 12.7 0.8 1 23 487 509 487 510 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 PRDM15-206 - 1141 2.5e-46 152.3 123.7 7 17 9.5e-07 0.0013 19.4 1.1 3 23 538 558 537 559 0.97 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 PRDM15-206 - 1141 2.5e-46 152.3 123.7 8 17 9.7e-05 0.13 13.1 0.9 1 23 563 585 563 586 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 PRDM15-206 - 1141 2.5e-46 152.3 123.7 9 17 0.0028 3.8 8.6 0.5 1 24 626 649 626 649 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 PRDM15-206 - 1141 2.5e-46 152.3 123.7 10 17 0.00033 0.45 11.5 0.6 2 23 655 676 654 677 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 PRDM15-206 - 1141 2.5e-46 152.3 123.7 11 17 1.7e-05 0.023 15.5 0.1 1 23 690 712 690 713 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 PRDM15-206 - 1141 2.5e-46 152.3 123.7 12 17 1.1e-06 0.0015 19.2 0.7 1 23 718 740 718 741 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 PRDM15-206 - 1141 2.5e-46 152.3 123.7 13 17 3.1e-05 0.042 14.7 2.6 1 23 746 768 746 769 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 PRDM15-206 - 1141 2.5e-46 152.3 123.7 14 17 0.00019 0.26 12.2 5.6 1 23 774 796 774 797 0.97 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 PRDM15-206 - 1141 2.5e-46 152.3 123.7 15 17 2.4e-05 0.034 15.0 0.5 1 23 802 824 802 825 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 PRDM15-206 - 1141 2.5e-46 152.3 123.7 16 17 0.00015 0.21 12.5 0.6 2 24 831 853 830 853 0.91 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 PRDM15-206 - 1141 2.5e-46 152.3 123.7 17 17 8.1e-05 0.11 13.4 1.4 3 24 861 882 860 882 0.96 C2H2-type zinc finger zf-C2H2 PF00096.26 23 PRDM15-206 - 1141 2.2e-45 150.6 133.5 1 17 0.45 6.3e+02 1.2 0.0 3 23 199 219 197 219 0.87 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 PRDM15-206 - 1141 2.2e-45 150.6 133.5 2 17 4.4e-08 6.1e-05 23.3 1.2 1 23 372 394 372 394 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 PRDM15-206 - 1141 2.2e-45 150.6 133.5 3 17 2.6e-05 0.036 14.5 1.4 1 23 399 422 399 422 0.95 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 PRDM15-206 - 1141 2.2e-45 150.6 133.5 4 17 0.008 11 6.7 1.0 1 16 433 448 433 453 0.87 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 PRDM15-206 - 1141 2.2e-45 150.6 133.5 5 17 3.7e-06 0.0051 17.2 4.5 1 23 460 482 460 482 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 PRDM15-206 - 1141 2.2e-45 150.6 133.5 6 17 4.2e-05 0.058 13.9 1.0 1 23 487 509 487 509 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 PRDM15-206 - 1141 2.2e-45 150.6 133.5 7 17 2.7e-05 0.037 14.5 2.5 3 23 538 558 538 558 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 PRDM15-206 - 1141 2.2e-45 150.6 133.5 8 17 2.3e-05 0.031 14.7 0.9 1 23 563 585 563 585 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 PRDM15-206 - 1141 2.2e-45 150.6 133.5 9 17 0.0017 2.3 8.9 0.6 1 23 626 649 626 649 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 PRDM15-206 - 1141 2.2e-45 150.6 133.5 10 17 0.0016 2.2 8.9 0.6 3 23 656 676 654 676 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 PRDM15-206 - 1141 2.2e-45 150.6 133.5 11 17 2.1e-06 0.003 17.9 0.2 1 23 690 712 690 712 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 PRDM15-206 - 1141 2.2e-45 150.6 133.5 12 17 5.6e-09 7.7e-06 26.1 1.1 1 23 718 740 718 740 0.95 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 PRDM15-206 - 1141 2.2e-45 150.6 133.5 13 17 0.00011 0.15 12.6 2.9 1 23 746 768 746 768 0.95 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 PRDM15-206 - 1141 2.2e-45 150.6 133.5 14 17 0.0013 1.8 9.2 6.3 1 23 774 796 774 796 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 PRDM15-206 - 1141 2.2e-45 150.6 133.5 15 17 9.1e-05 0.13 12.8 0.6 1 23 802 824 802 824 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 PRDM15-206 - 1141 2.2e-45 150.6 133.5 16 17 3.3e-06 0.0046 17.3 0.4 2 23 831 853 830 853 0.95 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 PRDM15-206 - 1141 2.2e-45 150.6 133.5 17 17 0.00011 0.16 12.5 1.8 2 23 860 882 859 882 0.96 Zinc finger, C2H2 type zf-H2C2_2 PF13465.6 26 PRDM15-206 - 1141 3.8e-28 96.6 118.4 1 17 0.42 5.8e+02 1.2 0.1 13 24 195 206 189 207 0.82 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 PRDM15-206 - 1141 3.8e-28 96.6 118.4 2 17 0.074 1e+02 3.6 0.1 10 24 365 381 353 383 0.71 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 PRDM15-206 - 1141 3.8e-28 96.6 118.4 3 17 9.9e-07 0.0014 19.0 0.7 1 25 386 409 386 410 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 PRDM15-206 - 1141 3.8e-28 96.6 118.4 4 17 0.0018 2.4 8.7 0.7 2 24 414 442 413 443 0.83 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 PRDM15-206 - 1141 3.8e-28 96.6 118.4 5 17 2.2 3.1e+03 -1.1 1.9 12 26 457 471 451 471 0.83 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 PRDM15-206 - 1141 3.8e-28 96.6 118.4 6 17 2.1e-05 0.03 14.8 3.4 1 24 474 496 474 498 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 PRDM15-206 - 1141 3.8e-28 96.6 118.4 7 17 0.13 1.9e+02 2.8 1.9 17 25 538 546 531 547 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 PRDM15-206 - 1141 3.8e-28 96.6 118.4 8 17 0.00018 0.25 11.8 1.0 1 24 550 572 550 574 0.86 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 PRDM15-206 - 1141 3.8e-28 96.6 118.4 9 17 0.005 6.9 7.3 0.3 4 25 643 664 640 664 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 PRDM15-206 - 1141 3.8e-28 96.6 118.4 10 17 0.59 8.2e+02 0.7 0.2 5 25 672 700 670 701 0.64 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 PRDM15-206 - 1141 3.8e-28 96.6 118.4 11 17 1e-08 1.4e-05 25.3 0.5 1 25 704 728 704 729 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 PRDM15-206 - 1141 3.8e-28 96.6 118.4 12 17 1.8e-05 0.024 15.0 0.2 2 23 733 754 732 757 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 PRDM15-206 - 1141 3.8e-28 96.6 118.4 13 17 7.8e-08 0.00011 22.5 3.7 1 25 760 784 760 785 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 PRDM15-206 - 1141 3.8e-28 96.6 118.4 14 17 5.5e-07 0.00076 19.8 1.8 3 25 790 812 788 813 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 PRDM15-206 - 1141 3.8e-28 96.6 118.4 15 17 4.6e-06 0.0063 16.9 0.3 4 26 819 841 817 841 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 PRDM15-206 - 1141 3.8e-28 96.6 118.4 16 17 1.6 2.2e+03 -0.6 0.1 2 21 845 865 844 870 0.78 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 PRDM15-206 - 1141 3.8e-28 96.6 118.4 17 17 0.24 3.3e+02 2.0 0.5 2 10 874 883 873 885 0.75 Zinc-finger double domain zf-C2H2_jaz PF12171.8 27 PRDM15-206 - 1141 2.8e-19 68.9 92.4 1 18 0.011 15 6.0 0.0 1 24 196 219 196 220 0.90 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 PRDM15-206 - 1141 2.8e-19 68.9 92.4 2 18 2.5e-05 0.035 14.4 0.8 4 24 374 394 371 395 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 PRDM15-206 - 1141 2.8e-19 68.9 92.4 3 18 3.2e-05 0.044 14.1 0.5 2 21 399 418 398 419 0.95 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 PRDM15-206 - 1141 2.8e-19 68.9 92.4 4 18 0.014 19 5.7 0.1 2 20 433 451 432 452 0.91 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 PRDM15-206 - 1141 2.8e-19 68.9 92.4 5 18 0.11 1.6e+02 2.7 2.8 2 22 460 480 459 483 0.91 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 PRDM15-206 - 1141 2.8e-19 68.9 92.4 6 18 0.00051 0.71 10.2 0.5 1 22 486 507 486 507 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 PRDM15-206 - 1141 2.8e-19 68.9 92.4 7 18 0.049 68 3.9 0.4 4 23 538 557 538 559 0.91 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 PRDM15-206 - 1141 2.8e-19 68.9 92.4 8 18 0.0049 6.8 7.1 0.2 1 21 562 582 562 583 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 PRDM15-206 - 1141 2.8e-19 68.9 92.4 9 18 1.6 2.2e+03 -0.9 0.0 10 22 585 597 584 598 0.90 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 PRDM15-206 - 1141 2.8e-19 68.9 92.4 10 18 0.56 7.7e+02 0.6 0.2 1 21 625 645 625 645 0.91 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 PRDM15-206 - 1141 2.8e-19 68.9 92.4 11 18 0.093 1.3e+02 3.0 0.1 4 21 656 673 654 674 0.90 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 PRDM15-206 - 1141 2.8e-19 68.9 92.4 12 18 0.00068 0.94 9.8 0.0 3 21 691 709 689 710 0.91 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 PRDM15-206 - 1141 2.8e-19 68.9 92.4 13 18 0.0034 4.7 7.6 0.3 2 22 718 738 717 738 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 PRDM15-206 - 1141 2.8e-19 68.9 92.4 14 18 0.015 21 5.6 0.3 4 22 748 766 746 766 0.95 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 PRDM15-206 - 1141 2.8e-19 68.9 92.4 15 18 0.62 8.6e+02 0.4 4.5 2 22 774 794 773 794 0.88 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 PRDM15-206 - 1141 2.8e-19 68.9 92.4 16 18 4.7e-06 0.0065 16.7 0.1 2 21 802 821 801 822 0.95 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 PRDM15-206 - 1141 2.8e-19 68.9 92.4 17 18 3.5e-05 0.048 14.0 0.8 1 21 829 849 829 850 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 PRDM15-206 - 1141 2.8e-19 68.9 92.4 18 18 0.62 8.6e+02 0.4 0.0 4 22 861 879 860 879 0.91 Zinc-finger double-stranded RNA-binding zf-met PF12874.7 25 PRDM15-206 - 1141 7.6e-16 57.9 101.7 1 17 0.1 1.4e+02 3.1 0.1 1 10 197 206 197 219 0.74 Zinc-finger of C2H2 type zf-met PF12874.7 25 PRDM15-206 - 1141 7.6e-16 57.9 101.7 2 17 0.00011 0.16 12.4 2.4 1 23 372 394 372 394 0.96 Zinc-finger of C2H2 type zf-met PF12874.7 25 PRDM15-206 - 1141 7.6e-16 57.9 101.7 3 17 0.0071 9.8 6.7 0.5 1 20 399 418 399 419 0.94 Zinc-finger of C2H2 type zf-met PF12874.7 25 PRDM15-206 - 1141 7.6e-16 57.9 101.7 4 17 0.031 42 4.7 0.1 1 19 433 451 433 452 0.85 Zinc-finger of C2H2 type zf-met PF12874.7 25 PRDM15-206 - 1141 7.6e-16 57.9 101.7 5 17 0.89 1.2e+03 0.1 3.8 1 24 460 481 460 482 0.88 Zinc-finger of C2H2 type zf-met PF12874.7 25 PRDM15-206 - 1141 7.6e-16 57.9 101.7 6 17 0.00012 0.17 12.3 0.2 1 20 487 506 487 507 0.91 Zinc-finger of C2H2 type zf-met PF12874.7 25 PRDM15-206 - 1141 7.6e-16 57.9 101.7 7 17 0.00018 0.24 11.8 0.8 3 20 538 555 537 558 0.96 Zinc-finger of C2H2 type zf-met PF12874.7 25 PRDM15-206 - 1141 7.6e-16 57.9 101.7 8 17 0.0024 3.3 8.2 0.1 1 20 563 582 563 585 0.91 Zinc-finger of C2H2 type zf-met PF12874.7 25 PRDM15-206 - 1141 7.6e-16 57.9 101.7 9 17 0.4 5.5e+02 1.2 0.1 1 19 626 644 626 645 0.78 Zinc-finger of C2H2 type zf-met PF12874.7 25 PRDM15-206 - 1141 7.6e-16 57.9 101.7 10 17 0.0016 2.1 8.8 0.3 3 21 656 674 654 677 0.88 Zinc-finger of C2H2 type zf-met PF12874.7 25 PRDM15-206 - 1141 7.6e-16 57.9 101.7 11 17 0.00012 0.16 12.4 0.1 3 19 692 708 688 712 0.93 Zinc-finger of C2H2 type zf-met PF12874.7 25 PRDM15-206 - 1141 7.6e-16 57.9 101.7 12 17 0.036 50 4.5 0.5 3 21 720 738 718 740 0.92 Zinc-finger of C2H2 type zf-met PF12874.7 25 PRDM15-206 - 1141 7.6e-16 57.9 101.7 13 17 6.4 8.8e+03 -2.7 0.2 3 20 748 765 746 766 0.82 Zinc-finger of C2H2 type zf-met PF12874.7 25 PRDM15-206 - 1141 7.6e-16 57.9 101.7 14 17 0.11 1.5e+02 3.0 3.0 1 20 774 793 774 794 0.93 Zinc-finger of C2H2 type zf-met PF12874.7 25 PRDM15-206 - 1141 7.6e-16 57.9 101.7 15 17 9.6e-05 0.13 12.7 0.3 1 19 802 820 802 824 0.95 Zinc-finger of C2H2 type zf-met PF12874.7 25 PRDM15-206 - 1141 7.6e-16 57.9 101.7 16 17 0.00028 0.39 11.2 0.9 1 21 830 850 830 850 0.95 Zinc-finger of C2H2 type zf-met PF12874.7 25 PRDM15-206 - 1141 7.6e-16 57.9 101.7 17 17 0.0027 3.8 8.0 0.2 3 21 861 879 860 879 0.95 Zinc-finger of C2H2 type zf-C2H2_6 PF13912.6 27 PRDM15-206 - 1141 2.5e-07 30.5 108.4 1 17 0.00064 0.89 9.6 0.3 4 21 199 216 198 222 0.89 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 PRDM15-206 - 1141 2.5e-07 30.5 108.4 2 17 2.9 3.9e+03 -2.0 0.1 16 22 364 370 362 370 0.82 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 PRDM15-206 - 1141 2.5e-07 30.5 108.4 3 17 0.0022 3.1 7.9 0.4 1 24 371 394 371 397 0.84 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 PRDM15-206 - 1141 2.5e-07 30.5 108.4 4 17 0.052 72 3.5 1.7 2 20 399 417 398 424 0.80 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 PRDM15-206 - 1141 2.5e-07 30.5 108.4 5 17 0.0064 8.8 6.5 0.8 1 21 432 452 432 455 0.85 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 PRDM15-206 - 1141 2.5e-07 30.5 108.4 6 17 0.1 1.4e+02 2.6 2.8 2 24 460 482 459 485 0.92 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 PRDM15-206 - 1141 2.5e-07 30.5 108.4 7 17 0.063 86 3.3 0.4 2 24 487 509 486 511 0.82 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 PRDM15-206 - 1141 2.5e-07 30.5 108.4 8 17 0.0018 2.4 8.2 1.1 4 24 538 558 537 561 0.88 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 PRDM15-206 - 1141 2.5e-07 30.5 108.4 9 17 0.055 76 3.5 0.1 2 20 563 581 562 581 0.90 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 PRDM15-206 - 1141 2.5e-07 30.5 108.4 10 17 0.84 1.2e+03 -0.3 0.6 2 15 626 639 625 644 0.88 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 PRDM15-206 - 1141 2.5e-07 30.5 108.4 11 17 0.013 18 5.5 0.1 2 11 654 663 654 664 0.91 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 PRDM15-206 - 1141 2.5e-07 30.5 108.4 12 17 0.0002 0.27 11.3 0.0 2 21 690 709 689 712 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 PRDM15-206 - 1141 2.5e-07 30.5 108.4 13 17 0.00021 0.29 11.2 0.8 2 24 718 740 717 741 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 PRDM15-206 - 1141 2.5e-07 30.5 108.4 14 17 0.016 23 5.1 3.2 2 25 746 769 746 771 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 PRDM15-206 - 1141 2.5e-07 30.5 108.4 15 17 0.0026 3.6 7.7 4.5 2 24 774 796 773 798 0.89 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 PRDM15-206 - 1141 2.5e-07 30.5 108.4 16 17 0.032 45 4.2 0.2 2 21 802 821 801 824 0.79 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 PRDM15-206 - 1141 2.5e-07 30.5 108.4 17 17 0.011 15 5.7 0.3 4 20 832 848 831 850 0.91 C2H2-type zinc finger # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/PRDM15-206.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/PRDM15-206.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/PRDM15-206.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/PRDM15-206.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/PRDM15-206.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:56:03 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-C2H2_4 PF13894.6 24 PRDM15-207 - 1141 2.5e-46 152.3 123.7 1 17 0.001 1.4 10.0 0.1 2 23 198 219 197 220 0.91 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 PRDM15-207 - 1141 2.5e-46 152.3 123.7 2 17 5.9e-07 0.00082 20.0 0.5 1 23 372 394 372 395 0.97 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 PRDM15-207 - 1141 2.5e-46 152.3 123.7 3 17 6.6e-05 0.091 13.7 1.9 1 24 399 422 399 422 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 PRDM15-207 - 1141 2.5e-46 152.3 123.7 4 17 0.18 2.4e+02 3.0 0.3 1 19 433 451 433 451 0.83 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 PRDM15-207 - 1141 2.5e-46 152.3 123.7 5 17 1.3e-05 0.019 15.8 2.8 1 23 460 482 460 483 0.97 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 PRDM15-207 - 1141 2.5e-46 152.3 123.7 6 17 0.00013 0.18 12.7 0.8 1 23 487 509 487 510 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 PRDM15-207 - 1141 2.5e-46 152.3 123.7 7 17 9.5e-07 0.0013 19.4 1.1 3 23 538 558 537 559 0.97 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 PRDM15-207 - 1141 2.5e-46 152.3 123.7 8 17 9.7e-05 0.13 13.1 0.9 1 23 563 585 563 586 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 PRDM15-207 - 1141 2.5e-46 152.3 123.7 9 17 0.0028 3.8 8.6 0.5 1 24 626 649 626 649 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 PRDM15-207 - 1141 2.5e-46 152.3 123.7 10 17 0.00033 0.45 11.5 0.6 2 23 655 676 654 677 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 PRDM15-207 - 1141 2.5e-46 152.3 123.7 11 17 1.7e-05 0.023 15.5 0.1 1 23 690 712 690 713 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 PRDM15-207 - 1141 2.5e-46 152.3 123.7 12 17 1.1e-06 0.0015 19.2 0.7 1 23 718 740 718 741 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 PRDM15-207 - 1141 2.5e-46 152.3 123.7 13 17 3.1e-05 0.042 14.7 2.6 1 23 746 768 746 769 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 PRDM15-207 - 1141 2.5e-46 152.3 123.7 14 17 0.00019 0.26 12.2 5.6 1 23 774 796 774 797 0.97 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 PRDM15-207 - 1141 2.5e-46 152.3 123.7 15 17 2.4e-05 0.034 15.0 0.5 1 23 802 824 802 825 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 PRDM15-207 - 1141 2.5e-46 152.3 123.7 16 17 0.00015 0.21 12.5 0.6 2 24 831 853 830 853 0.91 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 PRDM15-207 - 1141 2.5e-46 152.3 123.7 17 17 8.1e-05 0.11 13.4 1.4 3 24 861 882 860 882 0.96 C2H2-type zinc finger zf-C2H2 PF00096.26 23 PRDM15-207 - 1141 2.2e-45 150.6 133.5 1 17 0.45 6.3e+02 1.2 0.0 3 23 199 219 197 219 0.87 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 PRDM15-207 - 1141 2.2e-45 150.6 133.5 2 17 4.4e-08 6.1e-05 23.3 1.2 1 23 372 394 372 394 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 PRDM15-207 - 1141 2.2e-45 150.6 133.5 3 17 2.6e-05 0.036 14.5 1.4 1 23 399 422 399 422 0.95 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 PRDM15-207 - 1141 2.2e-45 150.6 133.5 4 17 0.008 11 6.7 1.0 1 16 433 448 433 453 0.87 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 PRDM15-207 - 1141 2.2e-45 150.6 133.5 5 17 3.7e-06 0.0051 17.2 4.5 1 23 460 482 460 482 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 PRDM15-207 - 1141 2.2e-45 150.6 133.5 6 17 4.2e-05 0.058 13.9 1.0 1 23 487 509 487 509 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 PRDM15-207 - 1141 2.2e-45 150.6 133.5 7 17 2.7e-05 0.037 14.5 2.5 3 23 538 558 538 558 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 PRDM15-207 - 1141 2.2e-45 150.6 133.5 8 17 2.3e-05 0.031 14.7 0.9 1 23 563 585 563 585 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 PRDM15-207 - 1141 2.2e-45 150.6 133.5 9 17 0.0017 2.3 8.9 0.6 1 23 626 649 626 649 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 PRDM15-207 - 1141 2.2e-45 150.6 133.5 10 17 0.0016 2.2 8.9 0.6 3 23 656 676 654 676 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 PRDM15-207 - 1141 2.2e-45 150.6 133.5 11 17 2.1e-06 0.003 17.9 0.2 1 23 690 712 690 712 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 PRDM15-207 - 1141 2.2e-45 150.6 133.5 12 17 5.6e-09 7.7e-06 26.1 1.1 1 23 718 740 718 740 0.95 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 PRDM15-207 - 1141 2.2e-45 150.6 133.5 13 17 0.00011 0.15 12.6 2.9 1 23 746 768 746 768 0.95 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 PRDM15-207 - 1141 2.2e-45 150.6 133.5 14 17 0.0013 1.8 9.2 6.3 1 23 774 796 774 796 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 PRDM15-207 - 1141 2.2e-45 150.6 133.5 15 17 9.1e-05 0.13 12.8 0.6 1 23 802 824 802 824 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 PRDM15-207 - 1141 2.2e-45 150.6 133.5 16 17 3.3e-06 0.0046 17.3 0.4 2 23 831 853 830 853 0.95 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 PRDM15-207 - 1141 2.2e-45 150.6 133.5 17 17 0.00011 0.16 12.5 1.8 2 23 860 882 859 882 0.96 Zinc finger, C2H2 type zf-H2C2_2 PF13465.6 26 PRDM15-207 - 1141 3.8e-28 96.6 118.4 1 17 0.42 5.8e+02 1.2 0.1 13 24 195 206 189 207 0.82 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 PRDM15-207 - 1141 3.8e-28 96.6 118.4 2 17 0.074 1e+02 3.6 0.1 10 24 365 381 353 383 0.71 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 PRDM15-207 - 1141 3.8e-28 96.6 118.4 3 17 9.9e-07 0.0014 19.0 0.7 1 25 386 409 386 410 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 PRDM15-207 - 1141 3.8e-28 96.6 118.4 4 17 0.0018 2.4 8.7 0.7 2 24 414 442 413 443 0.83 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 PRDM15-207 - 1141 3.8e-28 96.6 118.4 5 17 2.2 3.1e+03 -1.1 1.9 12 26 457 471 451 471 0.83 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 PRDM15-207 - 1141 3.8e-28 96.6 118.4 6 17 2.1e-05 0.03 14.8 3.4 1 24 474 496 474 498 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 PRDM15-207 - 1141 3.8e-28 96.6 118.4 7 17 0.13 1.9e+02 2.8 1.9 17 25 538 546 531 547 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 PRDM15-207 - 1141 3.8e-28 96.6 118.4 8 17 0.00018 0.25 11.8 1.0 1 24 550 572 550 574 0.86 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 PRDM15-207 - 1141 3.8e-28 96.6 118.4 9 17 0.005 6.9 7.3 0.3 4 25 643 664 640 664 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 PRDM15-207 - 1141 3.8e-28 96.6 118.4 10 17 0.59 8.2e+02 0.7 0.2 5 25 672 700 670 701 0.64 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 PRDM15-207 - 1141 3.8e-28 96.6 118.4 11 17 1e-08 1.4e-05 25.3 0.5 1 25 704 728 704 729 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 PRDM15-207 - 1141 3.8e-28 96.6 118.4 12 17 1.8e-05 0.024 15.0 0.2 2 23 733 754 732 757 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 PRDM15-207 - 1141 3.8e-28 96.6 118.4 13 17 7.8e-08 0.00011 22.5 3.7 1 25 760 784 760 785 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 PRDM15-207 - 1141 3.8e-28 96.6 118.4 14 17 5.5e-07 0.00076 19.8 1.8 3 25 790 812 788 813 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 PRDM15-207 - 1141 3.8e-28 96.6 118.4 15 17 4.6e-06 0.0063 16.9 0.3 4 26 819 841 817 841 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 PRDM15-207 - 1141 3.8e-28 96.6 118.4 16 17 1.6 2.2e+03 -0.6 0.1 2 21 845 865 844 870 0.78 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 PRDM15-207 - 1141 3.8e-28 96.6 118.4 17 17 0.24 3.3e+02 2.0 0.5 2 10 874 883 873 885 0.75 Zinc-finger double domain zf-C2H2_jaz PF12171.8 27 PRDM15-207 - 1141 2.8e-19 68.9 92.4 1 18 0.011 15 6.0 0.0 1 24 196 219 196 220 0.90 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 PRDM15-207 - 1141 2.8e-19 68.9 92.4 2 18 2.5e-05 0.035 14.4 0.8 4 24 374 394 371 395 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 PRDM15-207 - 1141 2.8e-19 68.9 92.4 3 18 3.2e-05 0.044 14.1 0.5 2 21 399 418 398 419 0.95 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 PRDM15-207 - 1141 2.8e-19 68.9 92.4 4 18 0.014 19 5.7 0.1 2 20 433 451 432 452 0.91 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 PRDM15-207 - 1141 2.8e-19 68.9 92.4 5 18 0.11 1.6e+02 2.7 2.8 2 22 460 480 459 483 0.91 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 PRDM15-207 - 1141 2.8e-19 68.9 92.4 6 18 0.00051 0.71 10.2 0.5 1 22 486 507 486 507 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 PRDM15-207 - 1141 2.8e-19 68.9 92.4 7 18 0.049 68 3.9 0.4 4 23 538 557 538 559 0.91 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 PRDM15-207 - 1141 2.8e-19 68.9 92.4 8 18 0.0049 6.8 7.1 0.2 1 21 562 582 562 583 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 PRDM15-207 - 1141 2.8e-19 68.9 92.4 9 18 1.6 2.2e+03 -0.9 0.0 10 22 585 597 584 598 0.90 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 PRDM15-207 - 1141 2.8e-19 68.9 92.4 10 18 0.56 7.7e+02 0.6 0.2 1 21 625 645 625 645 0.91 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 PRDM15-207 - 1141 2.8e-19 68.9 92.4 11 18 0.093 1.3e+02 3.0 0.1 4 21 656 673 654 674 0.90 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 PRDM15-207 - 1141 2.8e-19 68.9 92.4 12 18 0.00068 0.94 9.8 0.0 3 21 691 709 689 710 0.91 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 PRDM15-207 - 1141 2.8e-19 68.9 92.4 13 18 0.0034 4.7 7.6 0.3 2 22 718 738 717 738 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 PRDM15-207 - 1141 2.8e-19 68.9 92.4 14 18 0.015 21 5.6 0.3 4 22 748 766 746 766 0.95 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 PRDM15-207 - 1141 2.8e-19 68.9 92.4 15 18 0.62 8.6e+02 0.4 4.5 2 22 774 794 773 794 0.88 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 PRDM15-207 - 1141 2.8e-19 68.9 92.4 16 18 4.7e-06 0.0065 16.7 0.1 2 21 802 821 801 822 0.95 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 PRDM15-207 - 1141 2.8e-19 68.9 92.4 17 18 3.5e-05 0.048 14.0 0.8 1 21 829 849 829 850 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 PRDM15-207 - 1141 2.8e-19 68.9 92.4 18 18 0.62 8.6e+02 0.4 0.0 4 22 861 879 860 879 0.91 Zinc-finger double-stranded RNA-binding zf-met PF12874.7 25 PRDM15-207 - 1141 7.6e-16 57.9 101.7 1 17 0.1 1.4e+02 3.1 0.1 1 10 197 206 197 219 0.74 Zinc-finger of C2H2 type zf-met PF12874.7 25 PRDM15-207 - 1141 7.6e-16 57.9 101.7 2 17 0.00011 0.16 12.4 2.4 1 23 372 394 372 394 0.96 Zinc-finger of C2H2 type zf-met PF12874.7 25 PRDM15-207 - 1141 7.6e-16 57.9 101.7 3 17 0.0071 9.8 6.7 0.5 1 20 399 418 399 419 0.94 Zinc-finger of C2H2 type zf-met PF12874.7 25 PRDM15-207 - 1141 7.6e-16 57.9 101.7 4 17 0.031 42 4.7 0.1 1 19 433 451 433 452 0.85 Zinc-finger of C2H2 type zf-met PF12874.7 25 PRDM15-207 - 1141 7.6e-16 57.9 101.7 5 17 0.89 1.2e+03 0.1 3.8 1 24 460 481 460 482 0.88 Zinc-finger of C2H2 type zf-met PF12874.7 25 PRDM15-207 - 1141 7.6e-16 57.9 101.7 6 17 0.00012 0.17 12.3 0.2 1 20 487 506 487 507 0.91 Zinc-finger of C2H2 type zf-met PF12874.7 25 PRDM15-207 - 1141 7.6e-16 57.9 101.7 7 17 0.00018 0.24 11.8 0.8 3 20 538 555 537 558 0.96 Zinc-finger of C2H2 type zf-met PF12874.7 25 PRDM15-207 - 1141 7.6e-16 57.9 101.7 8 17 0.0024 3.3 8.2 0.1 1 20 563 582 563 585 0.91 Zinc-finger of C2H2 type zf-met PF12874.7 25 PRDM15-207 - 1141 7.6e-16 57.9 101.7 9 17 0.4 5.5e+02 1.2 0.1 1 19 626 644 626 645 0.78 Zinc-finger of C2H2 type zf-met PF12874.7 25 PRDM15-207 - 1141 7.6e-16 57.9 101.7 10 17 0.0016 2.1 8.8 0.3 3 21 656 674 654 677 0.88 Zinc-finger of C2H2 type zf-met PF12874.7 25 PRDM15-207 - 1141 7.6e-16 57.9 101.7 11 17 0.00012 0.16 12.4 0.1 3 19 692 708 688 712 0.93 Zinc-finger of C2H2 type zf-met PF12874.7 25 PRDM15-207 - 1141 7.6e-16 57.9 101.7 12 17 0.036 50 4.5 0.5 3 21 720 738 718 740 0.92 Zinc-finger of C2H2 type zf-met PF12874.7 25 PRDM15-207 - 1141 7.6e-16 57.9 101.7 13 17 6.4 8.8e+03 -2.7 0.2 3 20 748 765 746 766 0.82 Zinc-finger of C2H2 type zf-met PF12874.7 25 PRDM15-207 - 1141 7.6e-16 57.9 101.7 14 17 0.11 1.5e+02 3.0 3.0 1 20 774 793 774 794 0.93 Zinc-finger of C2H2 type zf-met PF12874.7 25 PRDM15-207 - 1141 7.6e-16 57.9 101.7 15 17 9.6e-05 0.13 12.7 0.3 1 19 802 820 802 824 0.95 Zinc-finger of C2H2 type zf-met PF12874.7 25 PRDM15-207 - 1141 7.6e-16 57.9 101.7 16 17 0.00028 0.39 11.2 0.9 1 21 830 850 830 850 0.95 Zinc-finger of C2H2 type zf-met PF12874.7 25 PRDM15-207 - 1141 7.6e-16 57.9 101.7 17 17 0.0027 3.8 8.0 0.2 3 21 861 879 860 879 0.95 Zinc-finger of C2H2 type zf-C2H2_6 PF13912.6 27 PRDM15-207 - 1141 2.5e-07 30.5 108.4 1 17 0.00064 0.89 9.6 0.3 4 21 199 216 198 222 0.89 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 PRDM15-207 - 1141 2.5e-07 30.5 108.4 2 17 2.9 3.9e+03 -2.0 0.1 16 22 364 370 362 370 0.82 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 PRDM15-207 - 1141 2.5e-07 30.5 108.4 3 17 0.0022 3.1 7.9 0.4 1 24 371 394 371 397 0.84 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 PRDM15-207 - 1141 2.5e-07 30.5 108.4 4 17 0.052 72 3.5 1.7 2 20 399 417 398 424 0.80 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 PRDM15-207 - 1141 2.5e-07 30.5 108.4 5 17 0.0064 8.8 6.5 0.8 1 21 432 452 432 455 0.85 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 PRDM15-207 - 1141 2.5e-07 30.5 108.4 6 17 0.1 1.4e+02 2.6 2.8 2 24 460 482 459 485 0.92 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 PRDM15-207 - 1141 2.5e-07 30.5 108.4 7 17 0.063 86 3.3 0.4 2 24 487 509 486 511 0.82 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 PRDM15-207 - 1141 2.5e-07 30.5 108.4 8 17 0.0018 2.4 8.2 1.1 4 24 538 558 537 561 0.88 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 PRDM15-207 - 1141 2.5e-07 30.5 108.4 9 17 0.055 76 3.5 0.1 2 20 563 581 562 581 0.90 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 PRDM15-207 - 1141 2.5e-07 30.5 108.4 10 17 0.84 1.2e+03 -0.3 0.6 2 15 626 639 625 644 0.88 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 PRDM15-207 - 1141 2.5e-07 30.5 108.4 11 17 0.013 18 5.5 0.1 2 11 654 663 654 664 0.91 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 PRDM15-207 - 1141 2.5e-07 30.5 108.4 12 17 0.0002 0.27 11.3 0.0 2 21 690 709 689 712 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 PRDM15-207 - 1141 2.5e-07 30.5 108.4 13 17 0.00021 0.29 11.2 0.8 2 24 718 740 717 741 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 PRDM15-207 - 1141 2.5e-07 30.5 108.4 14 17 0.016 23 5.1 3.2 2 25 746 769 746 771 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 PRDM15-207 - 1141 2.5e-07 30.5 108.4 15 17 0.0026 3.6 7.7 4.5 2 24 774 796 773 798 0.89 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 PRDM15-207 - 1141 2.5e-07 30.5 108.4 16 17 0.032 45 4.2 0.2 2 21 802 821 801 824 0.79 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 PRDM15-207 - 1141 2.5e-07 30.5 108.4 17 17 0.011 15 5.7 0.3 4 20 832 848 831 850 0.91 C2H2-type zinc finger # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/PRDM15-207.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/PRDM15-207.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/PRDM15-207.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/PRDM15-207.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/PRDM15-207.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:56:03 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-C2H2_4 PF13894.6 24 PRDM15-208 - 647 6e-33 110.7 85.5 1 12 4.3 5.5e+03 -1.2 0.3 12 23 4 15 1 16 0.74 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 PRDM15-208 - 647 6e-33 110.7 85.5 2 12 5.3e-07 0.00068 20.3 1.1 3 23 44 64 43 65 0.97 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 PRDM15-208 - 647 6e-33 110.7 85.5 3 12 5.4e-05 0.069 14.0 0.9 1 23 69 91 69 92 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 PRDM15-208 - 647 6e-33 110.7 85.5 4 12 0.0015 2 9.5 0.5 1 24 132 155 132 155 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 PRDM15-208 - 647 6e-33 110.7 85.5 5 12 0.00018 0.23 12.4 0.6 2 23 161 182 160 183 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 PRDM15-208 - 647 6e-33 110.7 85.5 6 12 9.3e-06 0.012 16.4 0.1 1 23 196 218 196 219 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 PRDM15-208 - 647 6e-33 110.7 85.5 7 12 6.1e-07 0.00079 20.1 0.7 1 23 224 246 224 247 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 PRDM15-208 - 647 6e-33 110.7 85.5 8 12 1.7e-05 0.022 15.6 2.6 1 23 252 274 252 275 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 PRDM15-208 - 647 6e-33 110.7 85.5 9 12 0.00011 0.14 13.1 5.6 1 23 280 302 280 303 0.97 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 PRDM15-208 - 647 6e-33 110.7 85.5 10 12 1.4e-05 0.017 15.9 0.5 1 23 308 330 308 331 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 PRDM15-208 - 647 6e-33 110.7 85.5 11 12 8.6e-05 0.11 13.4 0.6 2 24 337 359 336 359 0.91 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 PRDM15-208 - 647 6e-33 110.7 85.5 12 12 4.5e-05 0.058 14.3 1.4 3 24 367 388 366 388 0.96 C2H2-type zinc finger zf-C2H2 PF00096.26 23 PRDM15-208 - 647 2.5e-32 109.5 91.2 1 12 0.95 1.2e+03 0.3 0.4 10 23 2 15 1 15 0.87 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 PRDM15-208 - 647 2.5e-32 109.5 91.2 2 12 1.5e-05 0.019 15.4 2.5 3 23 44 64 44 64 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 PRDM15-208 - 647 2.5e-32 109.5 91.2 3 12 1.3e-05 0.016 15.6 0.9 1 23 69 91 69 91 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 PRDM15-208 - 647 2.5e-32 109.5 91.2 4 12 0.00093 1.2 9.7 0.6 1 23 132 155 132 155 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 PRDM15-208 - 647 2.5e-32 109.5 91.2 5 12 0.00092 1.2 9.8 0.6 3 23 162 182 160 182 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 PRDM15-208 - 647 2.5e-32 109.5 91.2 6 12 1.2e-06 0.0015 18.8 0.2 1 23 196 218 196 218 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 PRDM15-208 - 647 2.5e-32 109.5 91.2 7 12 3.1e-09 4e-06 27.0 1.1 1 23 224 246 224 246 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 PRDM15-208 - 647 2.5e-32 109.5 91.2 8 12 5.9e-05 0.076 13.5 2.9 1 23 252 274 252 274 0.95 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 PRDM15-208 - 647 2.5e-32 109.5 91.2 9 12 0.00075 0.96 10.0 6.3 1 23 280 302 280 302 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 PRDM15-208 - 647 2.5e-32 109.5 91.2 10 12 5.1e-05 0.066 13.7 0.6 1 23 308 330 308 330 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 PRDM15-208 - 647 2.5e-32 109.5 91.2 11 12 1.9e-06 0.0024 18.2 0.4 2 23 337 359 336 359 0.95 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 PRDM15-208 - 647 2.5e-32 109.5 91.2 12 12 6.4e-05 0.082 13.4 1.8 2 23 366 388 365 388 0.96 Zinc finger, C2H2 type zf-H2C2_2 PF13465.6 26 PRDM15-208 - 647 1.2e-21 76.1 85.8 1 12 0.06 77 4.0 1.5 17 25 44 52 36 53 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 PRDM15-208 - 647 1.2e-21 76.1 85.8 2 12 0.0001 0.13 12.7 1.0 1 24 56 78 56 80 0.86 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 PRDM15-208 - 647 1.2e-21 76.1 85.8 3 12 7.6 9.8e+03 -2.7 0.4 14 25 131 142 128 143 0.76 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 PRDM15-208 - 647 1.2e-21 76.1 85.8 4 12 0.0028 3.6 8.2 0.3 4 25 149 170 146 170 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 PRDM15-208 - 647 1.2e-21 76.1 85.8 5 12 0.32 4.1e+02 1.7 0.2 5 25 178 206 175 207 0.66 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 PRDM15-208 - 647 1.2e-21 76.1 85.8 6 12 5.7e-09 7.3e-06 26.2 0.5 1 25 210 234 210 235 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 PRDM15-208 - 647 1.2e-21 76.1 85.8 7 12 1e-05 0.013 15.9 0.2 2 23 239 260 238 263 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 PRDM15-208 - 647 1.2e-21 76.1 85.8 8 12 4.4e-08 5.6e-05 23.4 3.7 1 25 266 290 266 291 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 PRDM15-208 - 647 1.2e-21 76.1 85.8 9 12 3.1e-07 0.0004 20.7 1.8 3 25 296 318 294 319 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 PRDM15-208 - 647 1.2e-21 76.1 85.8 10 12 2.6e-06 0.0033 17.8 0.3 4 26 325 347 323 347 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 PRDM15-208 - 647 1.2e-21 76.1 85.8 11 12 0.91 1.2e+03 0.2 0.1 2 21 351 371 350 376 0.78 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 PRDM15-208 - 647 1.2e-21 76.1 85.8 12 12 0.14 1.8e+02 2.8 0.5 2 10 380 389 379 391 0.75 Zinc-finger double domain zf-met PF12874.7 25 PRDM15-208 - 647 1.2e-14 54.1 59.1 1 11 0.0001 0.13 12.7 0.8 3 20 44 61 43 64 0.96 Zinc-finger of C2H2 type zf-met PF12874.7 25 PRDM15-208 - 647 1.2e-14 54.1 59.1 2 11 0.0013 1.6 9.2 0.1 1 20 69 88 69 101 0.94 Zinc-finger of C2H2 type zf-met PF12874.7 25 PRDM15-208 - 647 1.2e-14 54.1 59.1 3 11 0.23 2.9e+02 2.0 0.1 1 19 132 150 132 151 0.78 Zinc-finger of C2H2 type zf-met PF12874.7 25 PRDM15-208 - 647 1.2e-14 54.1 59.1 4 11 0.00088 1.1 9.7 0.3 3 21 162 180 160 183 0.88 Zinc-finger of C2H2 type zf-met PF12874.7 25 PRDM15-208 - 647 1.2e-14 54.1 59.1 5 11 6.8e-05 0.087 13.2 0.1 3 19 198 214 194 218 0.93 Zinc-finger of C2H2 type zf-met PF12874.7 25 PRDM15-208 - 647 1.2e-14 54.1 59.1 6 11 0.021 26 5.4 0.5 3 21 226 244 224 246 0.92 Zinc-finger of C2H2 type zf-met PF12874.7 25 PRDM15-208 - 647 1.2e-14 54.1 59.1 7 11 3.7 4.7e+03 -1.8 0.2 3 20 254 271 252 272 0.82 Zinc-finger of C2H2 type zf-met PF12874.7 25 PRDM15-208 - 647 1.2e-14 54.1 59.1 8 11 0.06 77 3.9 3.0 1 20 280 299 280 300 0.93 Zinc-finger of C2H2 type zf-met PF12874.7 25 PRDM15-208 - 647 1.2e-14 54.1 59.1 9 11 5.5e-05 0.07 13.5 0.3 1 19 308 326 308 330 0.95 Zinc-finger of C2H2 type zf-met PF12874.7 25 PRDM15-208 - 647 1.2e-14 54.1 59.1 10 11 0.00016 0.21 12.1 0.9 1 21 336 356 336 356 0.95 Zinc-finger of C2H2 type zf-met PF12874.7 25 PRDM15-208 - 647 1.2e-14 54.1 59.1 11 11 0.0016 2 8.9 0.2 3 21 367 385 366 385 0.95 Zinc-finger of C2H2 type zf-C2H2_jaz PF12171.8 27 PRDM15-208 - 647 4.9e-14 52.2 52.2 1 12 0.028 36 4.8 0.4 4 23 44 63 44 65 0.91 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 PRDM15-208 - 647 4.9e-14 52.2 52.2 2 12 0.0025 3.3 8.1 0.0 1 21 68 88 68 89 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 PRDM15-208 - 647 4.9e-14 52.2 52.2 3 12 0.76 9.7e+02 0.2 0.0 10 22 91 103 89 104 0.89 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 PRDM15-208 - 647 4.9e-14 52.2 52.2 4 12 0.32 4.1e+02 1.4 0.2 1 21 131 151 131 151 0.91 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 PRDM15-208 - 647 4.9e-14 52.2 52.2 5 12 0.054 69 3.9 0.1 4 21 162 179 160 180 0.90 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 PRDM15-208 - 647 4.9e-14 52.2 52.2 6 12 0.00039 0.5 10.7 0.0 3 21 197 215 195 216 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 PRDM15-208 - 647 4.9e-14 52.2 52.2 7 12 0.0019 2.5 8.5 0.3 2 22 224 244 223 244 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 PRDM15-208 - 647 4.9e-14 52.2 52.2 8 12 0.0086 11 6.4 0.3 4 22 254 272 252 272 0.95 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 PRDM15-208 - 647 4.9e-14 52.2 52.2 9 12 0.36 4.6e+02 1.3 4.5 2 22 280 300 279 300 0.88 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 PRDM15-208 - 647 4.9e-14 52.2 52.2 10 12 2.7e-06 0.0035 17.6 0.1 2 21 308 327 307 328 0.95 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 PRDM15-208 - 647 4.9e-14 52.2 52.2 11 12 2e-05 0.026 14.8 0.8 1 21 335 355 335 356 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 PRDM15-208 - 647 4.9e-14 52.2 52.2 12 12 0.36 4.6e+02 1.3 0.0 4 22 367 385 366 385 0.91 Zinc-finger double-stranded RNA-binding zf-C2H2_6 PF13912.6 27 PRDM15-208 - 647 6e-08 32.5 65.8 1 10 0.001 1.3 9.1 1.1 4 24 44 64 43 67 0.89 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 PRDM15-208 - 647 6e-08 32.5 65.8 2 10 0.029 38 4.4 0.0 2 20 69 87 68 88 0.91 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 PRDM15-208 - 647 6e-08 32.5 65.8 3 10 0.48 6.2e+02 0.6 0.6 2 15 132 145 131 150 0.88 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 PRDM15-208 - 647 6e-08 32.5 65.8 4 10 0.0076 9.7 6.3 0.1 2 11 160 169 160 170 0.91 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 PRDM15-208 - 647 6e-08 32.5 65.8 5 10 0.00011 0.14 12.2 0.0 2 21 196 215 195 218 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 PRDM15-208 - 647 6e-08 32.5 65.8 6 10 0.00012 0.15 12.1 0.8 2 24 224 246 223 247 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 PRDM15-208 - 647 6e-08 32.5 65.8 7 10 0.0093 12 6.0 3.2 2 25 252 275 252 277 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 PRDM15-208 - 647 6e-08 32.5 65.8 8 10 0.0015 1.9 8.6 4.6 2 24 280 302 279 304 0.89 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 PRDM15-208 - 647 6e-08 32.5 65.8 9 10 0.019 24 5.1 0.2 2 21 308 327 307 330 0.79 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 PRDM15-208 - 647 6e-08 32.5 65.8 10 10 0.0063 8 6.6 0.3 4 20 338 354 337 356 0.91 C2H2-type zinc finger # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/PRDM15-208.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/PRDM15-208.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/PRDM15-208.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/PRDM15-208.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/PRDM15-208.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:56:04 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/PRDM15-209.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/PRDM15-209.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/PRDM15-209.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/PRDM15-209.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/PRDM15-209.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:56:04 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/PRDM15-210.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/PRDM15-210.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/PRDM15-210.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/PRDM15-210.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/PRDM15-210.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:56:04 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/PRDM15-211.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/PRDM15-211.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/PRDM15-211.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/PRDM15-211.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/PRDM15-211.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:56:05 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/PRDM15-212.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/PRDM15-212.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/PRDM15-212.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/PRDM15-212.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/PRDM15-212.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:56:05 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/PRDM15-213.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/PRDM15-213.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/PRDM15-213.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/PRDM15-213.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/PRDM15-213.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:56:05 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/PRDM15-214.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/PRDM15-214.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/PRDM15-214.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/PRDM15-214.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/PRDM15-214.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:56:06 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/PRDM15-215.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/PRDM15-215.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/PRDM15-215.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/PRDM15-215.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/PRDM15-215.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:56:06 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/PRDM15-216.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/PRDM15-216.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/PRDM15-216.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/PRDM15-216.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/PRDM15-216.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:56:06 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-C2H2 PF00096.26 23 PRDM2-201 - 1718 5.6e-19 67.5 59.2 1 8 3.6e-06 0.0054 17.1 4.3 1 23 360 382 360 382 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 PRDM2-201 - 1718 5.6e-19 67.5 59.2 2 8 7.4e-07 0.0011 19.3 2.0 1 23 390 412 390 412 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 PRDM2-201 - 1718 5.6e-19 67.5 59.2 3 8 7.5e-06 0.011 16.1 6.3 1 23 483 506 483 506 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 PRDM2-201 - 1718 5.6e-19 67.5 59.2 4 8 0.0057 8.5 7.1 0.2 1 23 1134 1156 1134 1156 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 PRDM2-201 - 1718 5.6e-19 67.5 59.2 5 8 0.0078 12 6.6 1.2 1 23 1162 1185 1162 1185 0.94 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 PRDM2-201 - 1718 5.6e-19 67.5 59.2 6 8 4.2e-05 0.063 13.8 1.9 1 23 1191 1214 1191 1214 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 PRDM2-201 - 1718 5.6e-19 67.5 59.2 7 8 0.013 19 6.0 0.1 2 20 1334 1352 1333 1354 0.94 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 PRDM2-201 - 1718 5.6e-19 67.5 59.2 8 8 8.4e-05 0.12 12.8 0.2 1 19 1455 1473 1455 1475 0.93 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 PRDM2-201 - 1718 3.3e-17 61.7 58.0 1 8 3.6e-06 0.0054 17.5 2.4 1 23 360 382 360 383 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 PRDM2-201 - 1718 3.3e-17 61.7 58.0 2 8 9.9e-05 0.15 13.0 0.9 1 23 390 412 390 413 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 PRDM2-201 - 1718 3.3e-17 61.7 58.0 3 8 3.3e-05 0.05 14.5 5.0 1 24 483 506 483 506 0.97 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 PRDM2-201 - 1718 3.3e-17 61.7 58.0 4 8 0.00025 0.38 11.7 0.2 1 23 1134 1156 1134 1157 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 PRDM2-201 - 1718 3.3e-17 61.7 58.0 5 8 0.00098 1.5 9.9 1.3 1 24 1162 1185 1162 1185 0.90 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 PRDM2-201 - 1718 3.3e-17 61.7 58.0 6 8 0.0012 1.8 9.6 2.5 1 24 1191 1214 1191 1214 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 PRDM2-201 - 1718 3.3e-17 61.7 58.0 7 8 0.022 33 5.7 0.3 2 21 1334 1353 1333 1355 0.91 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 PRDM2-201 - 1718 3.3e-17 61.7 58.0 8 8 0.00012 0.18 12.7 0.2 1 20 1455 1474 1455 1476 0.92 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 PRDM2-201 - 1718 4e-12 45.8 41.2 1 7 0.0087 13 5.9 1.6 2 21 360 379 359 382 0.92 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 PRDM2-201 - 1718 4e-12 45.8 41.2 2 7 3.6e-05 0.053 13.5 0.6 1 25 389 413 389 415 0.83 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 PRDM2-201 - 1718 4e-12 45.8 41.2 3 7 2.5e-06 0.0037 17.2 3.1 2 25 483 507 482 508 0.90 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 PRDM2-201 - 1718 4e-12 45.8 41.2 4 7 0.00085 1.3 9.1 0.0 2 24 1134 1156 1133 1159 0.91 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 PRDM2-201 - 1718 4e-12 45.8 41.2 5 7 0.00081 1.2 9.2 0.9 2 21 1191 1210 1190 1217 0.77 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 PRDM2-201 - 1718 4e-12 45.8 41.2 6 7 3 4.4e+03 -2.2 0.6 3 9 1334 1340 1334 1341 0.90 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 PRDM2-201 - 1718 4e-12 45.8 41.2 7 7 6e-06 0.009 16.0 0.1 2 20 1455 1473 1454 1475 0.96 C2H2-type zinc finger SET PF00856.28 169 PRDM2-201 - 1718 2.4e-07 31.3 0.0 1 2 1.6e-10 2.4e-07 31.3 0.0 106 169 83 141 41 141 0.86 SET domain SET PF00856.28 169 PRDM2-201 - 1718 2.4e-07 31.3 0.0 2 2 4 6e+03 -2.5 4.4 48 96 1392 1462 1134 1526 0.72 SET domain # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/PRDM2-201.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/PRDM2-201.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/PRDM2-201.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/PRDM2-201.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/PRDM2-201.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:56:07 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-C2H2 PF00096.26 23 PRDM2-202 - 1682 4.7e-19 67.7 59.2 1 8 3.6e-06 0.0053 17.1 4.3 1 23 360 382 360 382 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 PRDM2-202 - 1682 4.7e-19 67.7 59.2 2 8 7.2e-07 0.0011 19.3 2.0 1 23 390 412 390 412 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 PRDM2-202 - 1682 4.7e-19 67.7 59.2 3 8 7.4e-06 0.011 16.1 6.3 1 23 483 506 483 506 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 PRDM2-202 - 1682 4.7e-19 67.7 59.2 4 8 0.0056 8.3 7.1 0.2 1 23 1134 1156 1134 1156 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 PRDM2-202 - 1682 4.7e-19 67.7 59.2 5 8 0.0076 11 6.7 1.2 1 23 1162 1185 1162 1185 0.94 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 PRDM2-202 - 1682 4.7e-19 67.7 59.2 6 8 4.1e-05 0.062 13.8 1.9 1 23 1191 1214 1191 1214 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 PRDM2-202 - 1682 4.7e-19 67.7 59.2 7 8 0.012 18 6.0 0.1 2 20 1334 1352 1333 1354 0.94 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 PRDM2-202 - 1682 4.7e-19 67.7 59.2 8 8 8.2e-05 0.12 12.9 0.2 1 19 1455 1473 1455 1475 0.93 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 PRDM2-202 - 1682 2.7e-17 61.9 58.0 1 8 3.5e-06 0.0052 17.5 2.4 1 23 360 382 360 383 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 PRDM2-202 - 1682 2.7e-17 61.9 58.0 2 8 9.7e-05 0.15 13.0 0.9 1 23 390 412 390 413 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 PRDM2-202 - 1682 2.7e-17 61.9 58.0 3 8 3.3e-05 0.049 14.5 5.0 1 24 483 506 483 506 0.97 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 PRDM2-202 - 1682 2.7e-17 61.9 58.0 4 8 0.00025 0.37 11.8 0.2 1 23 1134 1156 1134 1157 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 PRDM2-202 - 1682 2.7e-17 61.9 58.0 5 8 0.00095 1.4 9.9 1.3 1 24 1162 1185 1162 1185 0.90 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 PRDM2-202 - 1682 2.7e-17 61.9 58.0 6 8 0.0012 1.8 9.7 2.5 1 24 1191 1214 1191 1214 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 PRDM2-202 - 1682 2.7e-17 61.9 58.0 7 8 0.022 32 5.7 0.3 2 21 1334 1353 1333 1355 0.91 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 PRDM2-202 - 1682 2.7e-17 61.9 58.0 8 8 0.00012 0.17 12.8 0.2 1 20 1455 1474 1455 1476 0.92 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 PRDM2-202 - 1682 3.5e-12 46.0 41.2 1 7 0.0085 13 6.0 1.6 2 21 360 379 359 382 0.92 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 PRDM2-202 - 1682 3.5e-12 46.0 41.2 2 7 3.5e-05 0.052 13.6 0.6 1 25 389 413 389 415 0.83 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 PRDM2-202 - 1682 3.5e-12 46.0 41.2 3 7 2.4e-06 0.0037 17.2 3.1 2 25 483 507 482 508 0.90 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 PRDM2-202 - 1682 3.5e-12 46.0 41.2 4 7 0.00083 1.2 9.2 0.0 2 24 1134 1156 1133 1159 0.91 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 PRDM2-202 - 1682 3.5e-12 46.0 41.2 5 7 0.00079 1.2 9.2 0.9 2 21 1191 1210 1190 1217 0.77 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 PRDM2-202 - 1682 3.5e-12 46.0 41.2 6 7 2.9 4.3e+03 -2.1 0.6 3 9 1334 1340 1334 1341 0.90 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 PRDM2-202 - 1682 3.5e-12 46.0 41.2 7 7 5.9e-06 0.0088 16.0 0.1 2 20 1455 1473 1454 1475 0.96 C2H2-type zinc finger SET PF00856.28 169 PRDM2-202 - 1682 2.4e-07 31.3 0.0 1 2 1.6e-10 2.4e-07 31.3 0.0 106 169 83 141 41 141 0.86 SET domain SET PF00856.28 169 PRDM2-202 - 1682 2.4e-07 31.3 0.0 2 2 3.5 5.2e+03 -2.3 4.3 48 96 1392 1462 1134 1532 0.73 SET domain # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/PRDM2-202.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/PRDM2-202.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/PRDM2-202.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/PRDM2-202.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/PRDM2-202.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:56:08 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-C2H2 PF00096.26 23 PRDM2-203 - 1481 1.4e-19 69.3 59.2 1 8 3.1e-06 0.0046 17.3 4.3 1 23 159 181 159 181 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 PRDM2-203 - 1481 1.4e-19 69.3 59.2 2 8 6.2e-07 0.00093 19.5 2.0 1 23 189 211 189 211 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 PRDM2-203 - 1481 1.4e-19 69.3 59.2 3 8 6.4e-06 0.0096 16.3 6.3 1 23 282 305 282 305 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 PRDM2-203 - 1481 1.4e-19 69.3 59.2 4 8 0.0048 7.2 7.3 0.2 1 23 933 955 933 955 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 PRDM2-203 - 1481 1.4e-19 69.3 59.2 5 8 0.0066 9.9 6.8 1.2 1 23 961 984 961 984 0.94 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 PRDM2-203 - 1481 1.4e-19 69.3 59.2 6 8 3.6e-05 0.054 14.0 1.9 1 23 990 1013 990 1013 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 PRDM2-203 - 1481 1.4e-19 69.3 59.2 7 8 0.011 16 6.2 0.1 2 20 1133 1151 1132 1153 0.94 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 PRDM2-203 - 1481 1.4e-19 69.3 59.2 8 8 7.1e-05 0.11 13.0 0.2 1 19 1254 1272 1254 1274 0.93 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 PRDM2-203 - 1481 8.2e-18 63.6 58.0 1 8 3e-06 0.0045 17.7 2.4 1 23 159 181 159 182 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 PRDM2-203 - 1481 8.2e-18 63.6 58.0 2 8 8.4e-05 0.13 13.2 0.9 1 23 189 211 189 212 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 PRDM2-203 - 1481 8.2e-18 63.6 58.0 3 8 2.8e-05 0.042 14.7 5.0 1 24 282 305 282 305 0.97 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 PRDM2-203 - 1481 8.2e-18 63.6 58.0 4 8 0.00021 0.32 12.0 0.2 1 23 933 955 933 956 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 PRDM2-203 - 1481 8.2e-18 63.6 58.0 5 8 0.00083 1.2 10.1 1.3 1 24 961 984 961 984 0.90 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 PRDM2-203 - 1481 8.2e-18 63.6 58.0 6 8 0.001 1.5 9.8 2.5 1 24 990 1013 990 1013 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 PRDM2-203 - 1481 8.2e-18 63.6 58.0 7 8 0.019 28 5.9 0.3 2 21 1133 1152 1132 1154 0.91 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 PRDM2-203 - 1481 8.2e-18 63.6 58.0 8 8 0.0001 0.15 13.0 0.2 1 20 1254 1273 1254 1275 0.92 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 PRDM2-203 - 1481 1.4e-12 47.3 41.2 1 7 0.0074 11 6.1 1.6 2 21 159 178 158 181 0.92 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 PRDM2-203 - 1481 1.4e-12 47.3 41.2 2 7 3e-05 0.045 13.8 0.6 1 25 188 212 188 214 0.84 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 PRDM2-203 - 1481 1.4e-12 47.3 41.2 3 7 2.1e-06 0.0032 17.4 3.1 2 25 282 306 281 307 0.90 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 PRDM2-203 - 1481 1.4e-12 47.3 41.2 4 7 0.00072 1.1 9.4 0.0 2 24 933 955 932 958 0.91 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 PRDM2-203 - 1481 1.4e-12 47.3 41.2 5 7 0.00069 1 9.4 0.9 2 21 990 1009 989 1016 0.77 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 PRDM2-203 - 1481 1.4e-12 47.3 41.2 6 7 2.5 3.8e+03 -1.9 0.6 3 9 1133 1139 1133 1140 0.90 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 PRDM2-203 - 1481 1.4e-12 47.3 41.2 7 7 5.1e-06 0.0077 16.2 0.1 2 20 1254 1272 1253 1274 0.96 C2H2-type zinc finger # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/PRDM2-203.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/PRDM2-203.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/PRDM2-203.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/PRDM2-203.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/PRDM2-203.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:56:08 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- SET PF00856.28 169 PRDM2-204 - 226 1.3e-09 38.7 0.0 1 2 0.066 1.2e+03 -0.3 0.0 148 161 40 53 29 55 0.73 SET domain SET PF00856.28 169 PRDM2-204 - 226 1.3e-09 38.7 0.0 2 2 6.8e-13 1.2e-08 35.5 0.0 105 169 82 141 41 141 0.84 SET domain # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/PRDM2-204.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/PRDM2-204.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/PRDM2-204.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/PRDM2-204.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/PRDM2-204.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:56:08 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/PRDM2-205.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/PRDM2-205.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/PRDM2-205.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/PRDM2-205.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/PRDM2-205.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:56:09 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-C2H2 PF00096.26 23 PRDM2-206 - 1481 1.4e-19 69.3 59.2 1 8 3.1e-06 0.0046 17.3 4.3 1 23 159 181 159 181 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 PRDM2-206 - 1481 1.4e-19 69.3 59.2 2 8 6.2e-07 0.00093 19.5 2.0 1 23 189 211 189 211 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 PRDM2-206 - 1481 1.4e-19 69.3 59.2 3 8 6.4e-06 0.0096 16.3 6.3 1 23 282 305 282 305 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 PRDM2-206 - 1481 1.4e-19 69.3 59.2 4 8 0.0048 7.2 7.3 0.2 1 23 933 955 933 955 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 PRDM2-206 - 1481 1.4e-19 69.3 59.2 5 8 0.0066 9.9 6.8 1.2 1 23 961 984 961 984 0.94 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 PRDM2-206 - 1481 1.4e-19 69.3 59.2 6 8 3.6e-05 0.054 14.0 1.9 1 23 990 1013 990 1013 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 PRDM2-206 - 1481 1.4e-19 69.3 59.2 7 8 0.011 16 6.2 0.1 2 20 1133 1151 1132 1153 0.94 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 PRDM2-206 - 1481 1.4e-19 69.3 59.2 8 8 7.1e-05 0.11 13.0 0.2 1 19 1254 1272 1254 1274 0.93 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 PRDM2-206 - 1481 8.2e-18 63.6 58.0 1 8 3e-06 0.0045 17.7 2.4 1 23 159 181 159 182 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 PRDM2-206 - 1481 8.2e-18 63.6 58.0 2 8 8.4e-05 0.13 13.2 0.9 1 23 189 211 189 212 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 PRDM2-206 - 1481 8.2e-18 63.6 58.0 3 8 2.8e-05 0.042 14.7 5.0 1 24 282 305 282 305 0.97 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 PRDM2-206 - 1481 8.2e-18 63.6 58.0 4 8 0.00021 0.32 12.0 0.2 1 23 933 955 933 956 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 PRDM2-206 - 1481 8.2e-18 63.6 58.0 5 8 0.00083 1.2 10.1 1.3 1 24 961 984 961 984 0.90 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 PRDM2-206 - 1481 8.2e-18 63.6 58.0 6 8 0.001 1.5 9.8 2.5 1 24 990 1013 990 1013 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 PRDM2-206 - 1481 8.2e-18 63.6 58.0 7 8 0.019 28 5.9 0.3 2 21 1133 1152 1132 1154 0.91 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 PRDM2-206 - 1481 8.2e-18 63.6 58.0 8 8 0.0001 0.15 13.0 0.2 1 20 1254 1273 1254 1275 0.92 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 PRDM2-206 - 1481 1.4e-12 47.3 41.2 1 7 0.0074 11 6.1 1.6 2 21 159 178 158 181 0.92 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 PRDM2-206 - 1481 1.4e-12 47.3 41.2 2 7 3e-05 0.045 13.8 0.6 1 25 188 212 188 214 0.84 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 PRDM2-206 - 1481 1.4e-12 47.3 41.2 3 7 2.1e-06 0.0032 17.4 3.1 2 25 282 306 281 307 0.90 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 PRDM2-206 - 1481 1.4e-12 47.3 41.2 4 7 0.00072 1.1 9.4 0.0 2 24 933 955 932 958 0.91 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 PRDM2-206 - 1481 1.4e-12 47.3 41.2 5 7 0.00069 1 9.4 0.9 2 21 990 1009 989 1016 0.77 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 PRDM2-206 - 1481 1.4e-12 47.3 41.2 6 7 2.5 3.8e+03 -1.9 0.6 3 9 1133 1139 1133 1140 0.90 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 PRDM2-206 - 1481 1.4e-12 47.3 41.2 7 7 5.1e-06 0.0077 16.2 0.1 2 20 1254 1272 1253 1274 0.96 C2H2-type zinc finger # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/PRDM2-206.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/PRDM2-206.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/PRDM2-206.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/PRDM2-206.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/PRDM2-206.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:56:09 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/PRDM2-207.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/PRDM2-207.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/PRDM2-207.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/PRDM2-207.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/PRDM2-207.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:56:10 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/PRDM2-208.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/PRDM2-208.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/PRDM2-208.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/PRDM2-208.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/PRDM2-208.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:56:10 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- SET PF00856.28 169 PRDM2-209 - 97 1.5e-08 35.2 0.4 1 2 2.3e-12 4.2e-08 33.8 0.0 109 169 1 56 1 56 0.92 SET domain SET PF00856.28 169 PRDM2-209 - 97 1.5e-08 35.2 0.4 2 2 0.084 1.5e+03 -0.6 0.1 51 74 66 90 58 95 0.68 SET domain # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/PRDM2-209.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/PRDM2-209.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/PRDM2-209.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/PRDM2-209.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/PRDM2-209.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:56:10 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/PRDM2-210.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/PRDM2-210.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/PRDM2-210.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/PRDM2-210.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/PRDM2-210.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:56:11 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- SET PF00856.28 169 PRDM2-211 - 97 1.5e-08 35.2 0.4 1 2 2.3e-12 4.2e-08 33.8 0.0 109 169 1 56 1 56 0.92 SET domain SET PF00856.28 169 PRDM2-211 - 97 1.5e-08 35.2 0.4 2 2 0.084 1.5e+03 -0.6 0.1 51 74 66 90 58 95 0.68 SET domain # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/PRDM2-211.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/PRDM2-211.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/PRDM2-211.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/PRDM2-211.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/PRDM2-211.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:56:11 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/PRDM2-212.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/PRDM2-212.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/PRDM2-212.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/PRDM2-212.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/PRDM2-212.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:56:11 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/PRDM2-213.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/PRDM2-213.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/PRDM2-213.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/PRDM2-213.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/PRDM2-213.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:56:12 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/PRDM2-214.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/PRDM2-214.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/PRDM2-214.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/PRDM2-214.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/PRDM2-214.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:56:12 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf_PR_Knuckle PF18445.1 38 PRDM4-201 - 801 1.1e-26 92.4 11.4 1 4 5.3 1.1e+04 -3.6 0.0 12 21 82 91 81 94 0.86 PR zinc knuckle motif zf_PR_Knuckle PF18445.1 38 PRDM4-201 - 801 1.1e-26 92.4 11.4 2 4 3e-29 5.9e-26 90.0 1.6 1 38 365 402 365 402 0.99 PR zinc knuckle motif zf_PR_Knuckle PF18445.1 38 PRDM4-201 - 801 1.1e-26 92.4 11.4 3 4 3.8 7.5e+03 -3.2 0.2 13 22 592 601 590 603 0.77 PR zinc knuckle motif zf_PR_Knuckle PF18445.1 38 PRDM4-201 - 801 1.1e-26 92.4 11.4 4 4 0.002 4 7.3 0.1 13 21 648 656 644 659 0.86 PR zinc knuckle motif zf-H2C2_2 PF13465.6 26 PRDM4-201 - 801 1.5e-25 88.4 54.4 1 8 3.2 6.3e+03 -2.1 0.3 17 24 377 384 377 385 0.90 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 PRDM4-201 - 801 1.5e-25 88.4 54.4 2 8 0.011 21 5.7 3.3 8 24 583 599 562 601 0.85 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 PRDM4-201 - 801 1.5e-25 88.4 54.4 3 8 6.1e-07 0.0012 19.2 2.5 5 25 608 628 605 629 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 PRDM4-201 - 801 1.5e-25 88.4 54.4 4 8 6.4e-11 1.3e-07 31.7 0.7 1 25 632 656 632 657 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 PRDM4-201 - 801 1.5e-25 88.4 54.4 5 8 1.6e-08 3.1e-05 24.2 0.7 1 24 660 683 660 683 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 PRDM4-201 - 801 1.5e-25 88.4 54.4 6 8 1.1e-07 0.00021 21.6 0.3 1 25 688 712 688 713 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 PRDM4-201 - 801 1.5e-25 88.4 54.4 7 8 9.5e-07 0.0019 18.6 2.9 1 25 716 740 716 741 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 PRDM4-201 - 801 1.5e-25 88.4 54.4 8 8 1.8 3.6e+03 -1.3 0.1 1 8 744 751 744 756 0.80 Zinc-finger double domain zf-C2H2 PF00096.26 23 PRDM4-201 - 801 2.7e-19 68.5 64.5 1 8 0.93 1.9e+03 -0.3 0.1 3 11 377 385 377 386 0.89 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 PRDM4-201 - 801 2.7e-19 68.5 64.5 2 8 0.32 6.5e+02 1.1 5.9 5 23 548 566 545 570 0.72 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 PRDM4-201 - 801 2.7e-19 68.5 64.5 3 8 5.1e-05 0.1 13.1 0.6 2 23 591 612 590 612 0.94 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 PRDM4-201 - 801 2.7e-19 68.5 64.5 4 8 4.1e-08 8.1e-05 22.9 2.2 1 23 618 640 618 640 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 PRDM4-201 - 801 2.7e-19 68.5 64.5 5 8 6.5e-09 1.3e-05 25.4 1.8 1 23 646 668 646 668 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 PRDM4-201 - 801 2.7e-19 68.5 64.5 6 8 1.3e-05 0.025 15.0 0.7 2 23 675 696 674 696 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 PRDM4-201 - 801 2.7e-19 68.5 64.5 7 8 0.0001 0.2 12.2 3.2 2 23 703 724 702 724 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 PRDM4-201 - 801 2.7e-19 68.5 64.5 8 8 1.1e-05 0.022 15.2 2.0 1 22 730 751 730 751 0.96 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 PRDM4-201 - 801 7.2e-16 57.5 62.3 1 8 1.1 2.2e+03 0.0 0.7 3 12 377 386 376 389 0.86 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 PRDM4-201 - 801 7.2e-16 57.5 62.3 2 8 0.03 60 4.9 2.2 5 23 548 566 545 567 0.91 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 PRDM4-201 - 801 7.2e-16 57.5 62.3 3 8 0.0002 0.4 11.6 0.9 1 23 590 612 590 613 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 PRDM4-201 - 801 7.2e-16 57.5 62.3 4 8 4.7e-07 0.00094 19.8 1.6 1 23 618 640 618 641 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 PRDM4-201 - 801 7.2e-16 57.5 62.3 5 8 5.5e-06 0.011 16.5 1.4 1 23 646 668 646 669 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 PRDM4-201 - 801 7.2e-16 57.5 62.3 6 8 1.2e-05 0.023 15.5 0.5 2 23 675 696 674 697 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 PRDM4-201 - 801 7.2e-16 57.5 62.3 7 8 3.1e-05 0.062 14.2 1.8 2 23 703 724 702 725 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 PRDM4-201 - 801 7.2e-16 57.5 62.3 8 8 9.2e-05 0.18 12.7 3.7 1 22 730 751 730 753 0.94 C2H2-type zinc finger # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/PRDM4-201.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/PRDM4-201.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/PRDM4-201.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/PRDM4-201.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/PRDM4-201.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:56:12 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/PRDM4-202.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/PRDM4-202.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/PRDM4-202.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/PRDM4-202.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/PRDM4-202.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:56:13 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/PRDM4-203.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/PRDM4-203.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/PRDM4-203.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/PRDM4-203.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/PRDM4-203.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:56:13 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/PRDM4-204.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/PRDM4-204.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/PRDM4-204.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/PRDM4-204.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/PRDM4-204.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:56:13 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 PRDM4-205 - 352 1.5e-29 101.1 50.3 1 7 0.027 30 5.3 5.1 8 24 134 150 113 152 0.84 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 PRDM4-205 - 352 1.5e-29 101.1 50.3 2 7 4.1e-07 0.00046 20.5 2.5 5 25 159 179 156 180 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 PRDM4-205 - 352 1.5e-29 101.1 50.3 3 7 4.2e-11 4.7e-08 33.1 0.7 1 25 183 207 183 208 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 PRDM4-205 - 352 1.5e-29 101.1 50.3 4 7 1e-08 1.2e-05 25.5 0.7 1 24 211 234 211 234 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 PRDM4-205 - 352 1.5e-29 101.1 50.3 5 7 7e-08 7.9e-05 22.9 0.3 1 25 239 263 239 264 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 PRDM4-205 - 352 1.5e-29 101.1 50.3 6 7 6.3e-07 0.0007 19.9 2.9 1 26 267 292 267 292 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 PRDM4-205 - 352 1.5e-29 101.1 50.3 7 7 1.3 1.4e+03 -0.0 0.1 1 8 295 302 295 307 0.80 Zinc-finger double domain zf-C2H2 PF00096.26 23 PRDM4-205 - 352 4.3e-23 80.4 60.0 1 7 0.22 2.4e+02 2.5 5.9 5 23 99 117 96 121 0.72 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 PRDM4-205 - 352 4.3e-23 80.4 60.0 2 7 3.4e-05 0.038 14.4 0.6 2 23 142 163 141 163 0.94 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 PRDM4-205 - 352 4.3e-23 80.4 60.0 3 7 2.7e-08 3.1e-05 24.2 2.2 1 23 169 191 169 191 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 PRDM4-205 - 352 4.3e-23 80.4 60.0 4 7 4.4e-09 4.9e-06 26.7 1.8 1 23 197 219 197 219 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 PRDM4-205 - 352 4.3e-23 80.4 60.0 5 7 8.4e-06 0.0095 16.4 0.7 2 23 226 247 225 247 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 PRDM4-205 - 352 4.3e-23 80.4 60.0 6 7 6.8e-05 0.076 13.5 3.2 2 23 254 275 253 275 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 PRDM4-205 - 352 4.3e-23 80.4 60.0 7 7 7.5e-06 0.0085 16.5 2.0 1 22 281 302 281 302 0.96 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 PRDM4-205 - 352 2.1e-20 71.6 54.9 1 7 0.02 22 6.2 2.2 5 23 99 117 96 118 0.91 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 PRDM4-205 - 352 2.1e-20 71.6 54.9 2 7 0.00013 0.15 13.0 0.9 1 23 141 163 141 164 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 PRDM4-205 - 352 2.1e-20 71.6 54.9 3 7 3.1e-07 0.00035 21.2 1.6 1 23 169 191 169 192 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 PRDM4-205 - 352 2.1e-20 71.6 54.9 4 7 3.6e-06 0.004 17.9 1.4 1 23 197 219 197 220 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 PRDM4-205 - 352 2.1e-20 71.6 54.9 5 7 7.7e-06 0.0086 16.8 0.5 2 23 226 247 225 248 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 PRDM4-205 - 352 2.1e-20 71.6 54.9 6 7 2.1e-05 0.023 15.5 1.8 2 23 254 275 253 276 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 PRDM4-205 - 352 2.1e-20 71.6 54.9 7 7 6e-05 0.068 14.0 3.7 1 22 281 302 281 304 0.94 C2H2-type zinc finger zf-met PF12874.7 25 PRDM4-205 - 352 1.3e-08 34.9 34.6 1 6 0.021 23 5.5 1.9 6 25 100 119 100 119 0.96 Zinc-finger of C2H2 type zf-met PF12874.7 25 PRDM4-205 - 352 1.3e-08 34.9 34.6 2 6 0.27 3e+02 2.0 0.3 1 22 141 162 141 164 0.79 Zinc-finger of C2H2 type zf-met PF12874.7 25 PRDM4-205 - 352 1.3e-08 34.9 34.6 3 6 7.7e-05 0.087 13.3 0.6 2 22 170 190 169 192 0.91 Zinc-finger of C2H2 type zf-met PF12874.7 25 PRDM4-205 - 352 1.3e-08 34.9 34.6 4 6 2.9e-07 0.00032 21.0 1.1 1 20 197 216 197 220 0.93 Zinc-finger of C2H2 type zf-met PF12874.7 25 PRDM4-205 - 352 1.3e-08 34.9 34.6 5 6 0.0029 3.3 8.2 0.2 2 19 226 243 225 247 0.91 Zinc-finger of C2H2 type zf-met PF12874.7 25 PRDM4-205 - 352 1.3e-08 34.9 34.6 6 6 0.016 17 5.9 0.7 3 23 255 275 253 276 0.88 Zinc-finger of C2H2 type # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/PRDM4-205.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/PRDM4-205.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/PRDM4-205.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/PRDM4-205.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/PRDM4-205.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:56:14 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/PRDM4-206.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/PRDM4-206.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/PRDM4-206.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/PRDM4-206.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/PRDM4-206.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:56:14 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- SET PF00856.28 169 PRDM6-201 - 384 2.7e-07 31.1 0.1 1 1 3.1e-10 5.6e-06 26.8 0.1 2 169 260 365 259 365 0.79 SET domain # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/PRDM6-201.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/PRDM6-201.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/PRDM6-201.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/PRDM6-201.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/PRDM6-201.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:56:15 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/PRDM6-202.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/PRDM6-202.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/PRDM6-202.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/PRDM6-202.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/PRDM6-202.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:56:15 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/PRDM6-203.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/PRDM6-203.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/PRDM6-203.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/PRDM6-203.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/PRDM6-203.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:56:15 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/PRDM6-204.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/PRDM6-204.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/PRDM6-204.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/PRDM6-204.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/PRDM6-204.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:56:16 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 PRDM9-201 - 894 1.4e-82 268.7 101.5 1 14 0.026 22 5.7 1.1 11 25 382 398 381 399 0.86 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 PRDM9-201 - 894 1.4e-82 268.7 101.5 2 14 4.2e-07 0.00036 20.8 0.2 5 24 542 561 539 562 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 PRDM9-201 - 894 1.4e-82 268.7 101.5 3 14 3.4e-08 2.9e-05 24.3 0.4 4 24 569 589 566 590 0.89 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 PRDM9-201 - 894 1.4e-82 268.7 101.5 4 14 9.6e-09 8.2e-06 26.0 0.4 4 25 597 618 595 619 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 PRDM9-201 - 894 1.4e-82 268.7 101.5 5 14 1.6e-08 1.3e-05 25.4 0.4 4 25 625 646 623 647 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 PRDM9-201 - 894 1.4e-82 268.7 101.5 6 14 3e-08 2.5e-05 24.5 0.4 4 24 653 673 651 674 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 PRDM9-201 - 894 1.4e-82 268.7 101.5 7 14 1.8e-08 1.5e-05 25.1 0.3 4 24 681 701 679 702 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 PRDM9-201 - 894 1.4e-82 268.7 101.5 8 14 5.7e-09 4.9e-06 26.7 0.3 4 26 709 731 707 731 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 PRDM9-201 - 894 1.4e-82 268.7 101.5 9 14 2.6e-09 2.3e-06 27.8 1.6 1 24 734 757 734 758 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 PRDM9-201 - 894 1.4e-82 268.7 101.5 10 14 2.6e-09 2.3e-06 27.8 1.6 1 24 762 785 762 786 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 PRDM9-201 - 894 1.4e-82 268.7 101.5 11 14 1.1e-09 9.4e-07 29.0 0.2 1 26 790 815 790 815 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 PRDM9-201 - 894 1.4e-82 268.7 101.5 12 14 1e-09 8.8e-07 29.1 1.4 1 26 818 843 818 843 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 PRDM9-201 - 894 1.4e-82 268.7 101.5 13 14 9.5e-10 8.1e-07 29.2 0.8 1 25 846 870 846 871 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 PRDM9-201 - 894 1.4e-82 268.7 101.5 14 14 8.7e-06 0.0074 16.7 1.2 4 17 877 890 874 892 0.91 Zinc-finger double domain zf-C2H2 PF00096.26 23 PRDM9-201 - 894 2.1e-63 207.4 114.5 1 14 0.32 2.7e+02 2.3 3.3 1 23 388 411 388 411 0.94 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 PRDM9-201 - 894 2.1e-63 207.4 114.5 2 14 0.00052 0.44 11.1 0.0 5 23 528 546 527 546 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 PRDM9-201 - 894 2.1e-63 207.4 114.5 3 14 3.3e-06 0.0029 18.0 0.7 1 23 552 574 552 574 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 PRDM9-201 - 894 2.1e-63 207.4 114.5 4 14 1.7e-05 0.015 15.8 0.3 1 23 580 602 580 602 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 PRDM9-201 - 894 2.1e-63 207.4 114.5 5 14 8.8e-08 7.5e-05 23.0 0.7 1 23 608 630 608 630 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 PRDM9-201 - 894 2.1e-63 207.4 114.5 6 14 8.8e-08 7.5e-05 23.0 0.7 1 23 636 658 636 658 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 PRDM9-201 - 894 2.1e-63 207.4 114.5 7 14 1.7e-05 0.015 15.8 0.3 1 23 664 686 664 686 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 PRDM9-201 - 894 2.1e-63 207.4 114.5 8 14 1.7e-05 0.015 15.8 0.3 1 23 692 714 692 714 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 PRDM9-201 - 894 2.1e-63 207.4 114.5 9 14 5.6e-09 4.8e-06 26.7 2.7 1 23 720 742 720 742 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 PRDM9-201 - 894 2.1e-63 207.4 114.5 10 14 7.7e-09 6.5e-06 26.3 2.7 1 23 748 770 748 770 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 PRDM9-201 - 894 2.1e-63 207.4 114.5 11 14 4.3e-09 3.6e-06 27.1 0.8 1 23 776 798 776 798 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 PRDM9-201 - 894 2.1e-63 207.4 114.5 12 14 5.6e-09 4.8e-06 26.7 2.7 1 23 804 826 804 826 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 PRDM9-201 - 894 2.1e-63 207.4 114.5 13 14 8.1e-09 6.9e-06 26.2 3.1 1 23 832 854 832 854 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 PRDM9-201 - 894 2.1e-63 207.4 114.5 14 14 1.8e-07 0.00015 22.0 3.0 1 23 860 882 860 882 0.99 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 PRDM9-201 - 894 8.9e-44 144.4 112.3 1 14 0.0011 0.91 10.5 3.9 1 24 388 411 388 411 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 PRDM9-201 - 894 8.9e-44 144.4 112.3 2 14 0.017 15 6.8 0.0 5 23 528 546 527 547 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 PRDM9-201 - 894 8.9e-44 144.4 112.3 3 14 0.0011 0.93 10.5 0.9 1 23 552 574 552 575 0.88 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 PRDM9-201 - 894 8.9e-44 144.4 112.3 4 14 8.1e-05 0.069 14.0 0.5 1 23 580 602 580 603 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 PRDM9-201 - 894 8.9e-44 144.4 112.3 5 14 1.9e-05 0.016 16.0 0.6 1 23 608 630 608 631 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 PRDM9-201 - 894 8.9e-44 144.4 112.3 6 14 1.9e-05 0.016 16.0 0.6 1 23 636 658 636 659 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 PRDM9-201 - 894 8.9e-44 144.4 112.3 7 14 8.1e-05 0.069 14.0 0.5 1 23 664 686 664 687 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 PRDM9-201 - 894 8.9e-44 144.4 112.3 8 14 8.1e-05 0.069 14.0 0.5 1 23 692 714 692 715 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 PRDM9-201 - 894 8.9e-44 144.4 112.3 9 14 6.6e-07 0.00056 20.5 1.9 1 23 720 742 720 743 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 PRDM9-201 - 894 8.9e-44 144.4 112.3 10 14 1.2e-06 0.00099 19.8 1.7 1 23 748 770 748 771 0.97 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 PRDM9-201 - 894 8.9e-44 144.4 112.3 11 14 2.6e-06 0.0022 18.7 0.5 1 23 776 798 776 799 0.97 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 PRDM9-201 - 894 8.9e-44 144.4 112.3 12 14 6.6e-07 0.00056 20.5 1.9 1 23 804 826 804 827 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 PRDM9-201 - 894 8.9e-44 144.4 112.3 13 14 1.5e-06 0.0012 19.5 1.9 1 23 832 854 832 855 0.97 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 PRDM9-201 - 894 8.9e-44 144.4 112.3 14 14 1.5e-05 0.013 16.3 2.3 1 23 860 882 860 883 0.97 C2H2-type zinc finger zf-C2H2_jaz PF12171.8 27 PRDM9-201 - 894 4.3e-21 74.7 28.3 1 13 1.8 1.5e+03 -0.4 0.6 4 21 390 407 387 408 0.86 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 PRDM9-201 - 894 4.3e-21 74.7 28.3 2 13 6.7 5.7e+03 -2.2 0.1 3 12 553 562 552 570 0.80 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 PRDM9-201 - 894 4.3e-21 74.7 28.3 3 13 0.014 12 6.3 0.0 2 24 580 602 579 602 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 PRDM9-201 - 894 4.3e-21 74.7 28.3 4 13 0.0017 1.5 9.2 0.0 2 22 608 628 607 628 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 PRDM9-201 - 894 4.3e-21 74.7 28.3 5 13 0.0017 1.5 9.2 0.0 2 22 636 656 635 656 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 PRDM9-201 - 894 4.3e-21 74.7 28.3 6 13 0.014 12 6.3 0.0 2 24 664 686 663 686 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 PRDM9-201 - 894 4.3e-21 74.7 28.3 7 13 0.014 12 6.3 0.0 2 24 692 714 691 714 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 PRDM9-201 - 894 4.3e-21 74.7 28.3 8 13 0.0019 1.6 9.1 0.1 2 24 720 742 719 742 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 PRDM9-201 - 894 4.3e-21 74.7 28.3 9 13 0.0092 7.8 6.9 0.0 2 24 748 770 747 770 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 PRDM9-201 - 894 4.3e-21 74.7 28.3 10 13 0.0036 3 8.2 0.0 2 24 776 798 775 798 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 PRDM9-201 - 894 4.3e-21 74.7 28.3 11 13 0.0019 1.6 9.1 0.1 2 24 804 826 803 826 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 PRDM9-201 - 894 4.3e-21 74.7 28.3 12 13 0.0043 3.7 8.0 0.1 2 24 832 854 831 854 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 PRDM9-201 - 894 4.3e-21 74.7 28.3 13 13 0.12 1e+02 3.3 0.2 2 23 860 881 859 882 0.86 Zinc-finger double-stranded RNA-binding SSXRD PF09514.10 31 PRDM9-201 - 894 2.6e-15 55.7 2.9 1 1 7.1e-18 6.1e-15 54.5 2.9 1 31 171 201 171 201 0.98 SSXRD motif zf-trcl PF13451.6 48 PRDM9-201 - 894 3e-12 46.2 37.3 1 13 1.6 1.4e+03 -0.7 1.7 2 15 200 213 199 215 0.88 Probable zinc-ribbon domain zf-trcl PF13451.6 48 PRDM9-201 - 894 3e-12 46.2 37.3 2 13 0.017 15 5.6 0.1 3 17 550 564 549 566 0.85 Probable zinc-ribbon domain zf-trcl PF13451.6 48 PRDM9-201 - 894 3e-12 46.2 37.3 3 13 0.005 4.2 7.3 0.0 3 17 578 592 576 594 0.89 Probable zinc-ribbon domain zf-trcl PF13451.6 48 PRDM9-201 - 894 3e-12 46.2 37.3 4 13 0.045 38 4.3 0.0 3 14 606 617 604 618 0.88 Probable zinc-ribbon domain zf-trcl PF13451.6 48 PRDM9-201 - 894 3e-12 46.2 37.3 5 13 0.045 38 4.3 0.0 3 14 634 645 632 646 0.88 Probable zinc-ribbon domain zf-trcl PF13451.6 48 PRDM9-201 - 894 3e-12 46.2 37.3 6 13 0.005 4.2 7.3 0.0 3 17 662 676 660 678 0.89 Probable zinc-ribbon domain zf-trcl PF13451.6 48 PRDM9-201 - 894 3e-12 46.2 37.3 7 13 0.005 4.2 7.3 0.0 3 17 690 704 688 706 0.89 Probable zinc-ribbon domain zf-trcl PF13451.6 48 PRDM9-201 - 894 3e-12 46.2 37.3 8 13 0.045 38 4.3 0.0 3 14 718 729 716 730 0.88 Probable zinc-ribbon domain zf-trcl PF13451.6 48 PRDM9-201 - 894 3e-12 46.2 37.3 9 13 0.048 41 4.2 0.0 3 14 746 757 744 758 0.88 Probable zinc-ribbon domain zf-trcl PF13451.6 48 PRDM9-201 - 894 3e-12 46.2 37.3 10 13 0.048 41 4.2 0.0 3 14 774 785 772 786 0.88 Probable zinc-ribbon domain zf-trcl PF13451.6 48 PRDM9-201 - 894 3e-12 46.2 37.3 11 13 0.045 38 4.3 0.0 3 14 802 813 800 814 0.88 Probable zinc-ribbon domain zf-trcl PF13451.6 48 PRDM9-201 - 894 3e-12 46.2 37.3 12 13 0.048 41 4.2 0.0 3 14 830 841 828 842 0.88 Probable zinc-ribbon domain zf-trcl PF13451.6 48 PRDM9-201 - 894 3e-12 46.2 37.3 13 13 0.045 38 4.3 0.0 3 14 858 869 856 870 0.88 Probable zinc-ribbon domain Zn-ribbon_8 PF09723.10 40 PRDM9-201 - 894 2.9e-10 40.1 60.2 1 13 7.8 6.6e+03 -2.7 0.4 8 13 205 210 194 214 0.78 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 PRDM9-201 - 894 2.9e-10 40.1 60.2 2 13 0.68 5.8e+02 0.7 0.7 24 32 384 393 374 397 0.74 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 PRDM9-201 - 894 2.9e-10 40.1 60.2 3 13 2.5e-05 0.022 14.9 0.2 6 34 552 587 551 590 0.93 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 PRDM9-201 - 894 2.9e-10 40.1 60.2 4 13 0.00014 0.12 12.5 2.0 6 38 608 647 607 649 0.86 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 PRDM9-201 - 894 2.9e-10 40.1 60.2 5 13 0.00037 0.31 11.2 1.8 6 34 636 671 635 675 0.88 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 PRDM9-201 - 894 2.9e-10 40.1 60.2 6 13 0.00025 0.21 11.7 1.5 6 34 664 699 662 702 0.90 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 PRDM9-201 - 894 2.9e-10 40.1 60.2 7 13 0.00027 0.23 11.6 1.8 6 34 692 727 691 732 0.90 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 PRDM9-201 - 894 2.9e-10 40.1 60.2 8 13 0.0002 0.17 12.0 2.2 6 34 720 755 718 761 0.90 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 PRDM9-201 - 894 2.9e-10 40.1 60.2 9 13 0.0005 0.43 10.7 2.7 6 34 748 783 747 786 0.90 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 PRDM9-201 - 894 2.9e-10 40.1 60.2 10 13 0.00094 0.8 9.9 2.5 6 34 776 811 775 815 0.90 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 PRDM9-201 - 894 2.9e-10 40.1 60.2 11 13 0.00016 0.14 12.3 1.9 6 34 804 839 803 844 0.90 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 PRDM9-201 - 894 2.9e-10 40.1 60.2 12 13 0.00058 0.49 10.5 2.9 6 34 832 867 831 873 0.90 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 PRDM9-201 - 894 2.9e-10 40.1 60.2 13 13 0.036 31 4.8 0.8 6 18 860 872 858 891 0.81 Zinc ribbon domain XPA_N PF01286.18 32 PRDM9-201 - 894 2.9e-10 40.0 29.7 1 12 0.18 1.5e+02 2.5 0.0 3 11 553 561 552 568 0.87 XPA protein N-terminal XPA_N PF01286.18 32 PRDM9-201 - 894 2.9e-10 40.0 29.7 2 12 0.071 61 3.8 0.0 3 16 581 595 579 598 0.74 XPA protein N-terminal XPA_N PF01286.18 32 PRDM9-201 - 894 2.9e-10 40.0 29.7 3 12 0.049 42 4.3 0.0 3 17 609 624 607 626 0.73 XPA protein N-terminal XPA_N PF01286.18 32 PRDM9-201 - 894 2.9e-10 40.0 29.7 4 12 0.049 42 4.3 0.0 3 17 637 652 635 654 0.73 XPA protein N-terminal XPA_N PF01286.18 32 PRDM9-201 - 894 2.9e-10 40.0 29.7 5 12 0.071 61 3.8 0.0 3 16 665 679 663 682 0.74 XPA protein N-terminal XPA_N PF01286.18 32 PRDM9-201 - 894 2.9e-10 40.0 29.7 6 12 0.071 61 3.8 0.0 3 16 693 707 691 710 0.74 XPA protein N-terminal XPA_N PF01286.18 32 PRDM9-201 - 894 2.9e-10 40.0 29.7 7 12 0.067 57 3.9 0.0 3 13 721 731 719 738 0.77 XPA protein N-terminal XPA_N PF01286.18 32 PRDM9-201 - 894 2.9e-10 40.0 29.7 8 12 0.031 27 4.9 0.0 3 13 749 759 747 766 0.79 XPA protein N-terminal XPA_N PF01286.18 32 PRDM9-201 - 894 2.9e-10 40.0 29.7 9 12 0.039 33 4.6 0.0 3 13 777 787 775 794 0.82 XPA protein N-terminal XPA_N PF01286.18 32 PRDM9-201 - 894 2.9e-10 40.0 29.7 10 12 0.067 57 3.9 0.0 3 13 805 815 803 822 0.77 XPA protein N-terminal XPA_N PF01286.18 32 PRDM9-201 - 894 2.9e-10 40.0 29.7 11 12 0.085 72 3.5 0.0 3 12 833 842 831 850 0.77 XPA protein N-terminal XPA_N PF01286.18 32 PRDM9-201 - 894 2.9e-10 40.0 29.7 12 12 0.044 38 4.4 0.0 3 13 861 871 859 873 0.90 XPA protein N-terminal zinc_ribbon_15 PF17032.5 86 PRDM9-201 - 894 3.9e-07 30.7 41.1 1 9 1.7 1.5e+03 0.0 0.3 34 47 199 212 179 220 0.63 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 PRDM9-201 - 894 3.9e-07 30.7 41.1 2 9 1.9 1.6e+03 -0.1 0.1 38 64 388 414 382 439 0.73 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 PRDM9-201 - 894 3.9e-07 30.7 41.1 3 9 0.051 43 4.9 0.1 38 74 524 560 513 567 0.86 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 PRDM9-201 - 894 3.9e-07 30.7 41.1 4 9 0.0094 8 7.3 1.2 32 73 574 615 539 622 0.63 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 PRDM9-201 - 894 3.9e-07 30.7 41.1 5 9 0.003 2.5 8.9 0.3 34 76 604 646 594 650 0.85 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 PRDM9-201 - 894 3.9e-07 30.7 41.1 6 9 0.0094 8 7.3 1.5 39 74 637 672 628 705 0.72 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 PRDM9-201 - 894 3.9e-07 30.7 41.1 7 9 0.0012 1 10.1 0.4 34 76 716 758 706 763 0.85 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 PRDM9-201 - 894 3.9e-07 30.7 41.1 8 9 0.0017 1.5 9.7 1.9 34 75 772 813 743 822 0.67 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 PRDM9-201 - 894 3.9e-07 30.7 41.1 9 9 0.00036 0.31 11.8 1.0 34 82 828 876 818 878 0.87 zinc-ribbon family KRAB PF01352.27 42 PRDM9-201 - 894 3.9e-07 29.6 0.0 1 1 1.2e-09 1.1e-06 28.2 0.0 4 42 28 65 27 65 0.90 KRAB box # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/PRDM9-201.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/PRDM9-201.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/PRDM9-201.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/PRDM9-201.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/PRDM9-201.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:56:16 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/PRDM9-202.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/PRDM9-202.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/PRDM9-202.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/PRDM9-202.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/PRDM9-202.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:56:17 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/PRDM9-203.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/PRDM9-203.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/PRDM9-203.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/PRDM9-203.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/PRDM9-203.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:56:17 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 RBAK-201 - 714 2.8e-94 305.7 148.5 1 21 2.2 3.3e+03 -1.2 0.0 15 22 135 142 128 144 0.84 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 RBAK-201 - 714 2.8e-94 305.7 148.5 2 21 0.26 3.8e+02 1.8 0.3 16 24 164 172 159 173 0.87 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 RBAK-201 - 714 2.8e-94 305.7 148.5 3 21 6 9e+03 -2.6 0.1 12 20 202 210 202 213 0.79 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 RBAK-201 - 714 2.8e-94 305.7 148.5 4 21 7 1.1e+04 -2.8 0.1 11 16 229 234 223 234 0.77 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 RBAK-201 - 714 2.8e-94 305.7 148.5 5 21 8.1e-05 0.12 12.8 0.2 11 24 257 270 252 270 0.84 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 RBAK-201 - 714 2.8e-94 305.7 148.5 6 21 1.5e-09 2.2e-06 27.8 0.2 5 25 279 299 277 300 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 RBAK-201 - 714 2.8e-94 305.7 148.5 7 21 4.7e-08 7e-05 23.1 1.6 2 24 304 326 303 326 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 RBAK-201 - 714 2.8e-94 305.7 148.5 8 21 2.5e-11 3.8e-08 33.4 2.0 1 24 331 354 331 354 0.97 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 RBAK-201 - 714 2.8e-94 305.7 148.5 9 21 1.9e-09 2.8e-06 27.5 1.4 1 25 359 383 359 384 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 RBAK-201 - 714 2.8e-94 305.7 148.5 10 21 8.8e-10 1.3e-06 28.5 0.8 1 24 387 410 387 412 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 RBAK-201 - 714 2.8e-94 305.7 148.5 11 21 3.1e-11 4.6e-08 33.1 1.0 4 25 418 439 416 440 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 RBAK-201 - 714 2.8e-94 305.7 148.5 12 21 1.9e-08 2.8e-05 24.3 1.1 2 25 444 467 443 467 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 RBAK-201 - 714 2.8e-94 305.7 148.5 13 21 1.9e-07 0.00029 21.1 1.9 2 23 472 493 471 494 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 RBAK-201 - 714 2.8e-94 305.7 148.5 14 21 5.2e-06 0.0078 16.6 1.4 9 24 505 520 497 521 0.80 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 RBAK-201 - 714 2.8e-94 305.7 148.5 15 21 0.00058 0.87 10.1 0.4 11 25 535 549 529 550 0.89 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 RBAK-201 - 714 2.8e-94 305.7 148.5 16 21 6.6e-07 0.00098 19.4 4.1 2 26 554 578 553 578 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 RBAK-201 - 714 2.8e-94 305.7 148.5 17 21 1e-11 1.5e-08 34.7 1.3 2 25 582 605 581 606 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 RBAK-201 - 714 2.8e-94 305.7 148.5 18 21 1.1e-09 1.7e-06 28.2 1.6 2 25 610 633 609 634 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 RBAK-201 - 714 2.8e-94 305.7 148.5 19 21 1.3e-10 1.9e-07 31.2 0.4 1 25 637 661 637 662 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 RBAK-201 - 714 2.8e-94 305.7 148.5 20 21 7.9e-09 1.2e-05 25.5 5.6 2 26 666 690 665 690 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 RBAK-201 - 714 2.8e-94 305.7 148.5 21 21 1.2 1.8e+03 -0.3 0.2 1 10 693 702 693 706 0.85 Zinc-finger double domain zf-C2H2 PF00096.26 23 RBAK-201 - 714 1e-76 249.3 152.0 1 18 0.61 9.1e+02 0.7 0.0 1 17 135 151 135 152 0.82 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 RBAK-201 - 714 1e-76 249.3 152.0 2 18 0.083 1.2e+02 3.4 0.3 2 10 164 172 163 175 0.90 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 RBAK-201 - 714 1e-76 249.3 152.0 3 18 5.2e-07 0.00078 19.8 2.8 1 23 261 283 261 283 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 RBAK-201 - 714 1e-76 249.3 152.0 4 18 2.4e-09 3.6e-06 27.1 0.8 1 23 289 311 289 311 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 RBAK-201 - 714 1e-76 249.3 152.0 5 18 9.7e-08 0.00015 22.1 6.3 1 23 317 339 317 339 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 RBAK-201 - 714 1e-76 249.3 152.0 6 18 1.6e-07 0.00024 21.4 5.5 1 23 345 367 345 367 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 RBAK-201 - 714 1e-76 249.3 152.0 7 18 4e-10 5.9e-07 29.6 0.8 1 23 373 395 373 395 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 RBAK-201 - 714 1e-76 249.3 152.0 8 18 3.5e-09 5.2e-06 26.6 2.5 1 23 401 423 401 423 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 RBAK-201 - 714 1e-76 249.3 152.0 9 18 7.7e-08 0.00012 22.4 2.0 1 23 429 451 429 451 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 RBAK-201 - 714 1e-76 249.3 152.0 10 18 2.3e-07 0.00034 20.9 0.6 1 23 457 479 457 479 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 RBAK-201 - 714 1e-76 249.3 152.0 11 18 0.36 5.4e+02 1.4 0.8 1 9 485 493 485 505 0.79 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 RBAK-201 - 714 1e-76 249.3 152.0 12 18 0.0031 4.6 7.9 0.2 1 10 511 520 511 530 0.89 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 RBAK-201 - 714 1e-76 249.3 152.0 13 18 8.8e-06 0.013 15.9 1.0 1 23 539 561 539 561 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 RBAK-201 - 714 1e-76 249.3 152.0 14 18 3.2e-08 4.7e-05 23.6 2.6 3 23 569 589 567 589 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 RBAK-201 - 714 1e-76 249.3 152.0 15 18 2.5e-07 0.00037 20.8 3.1 1 23 595 617 595 617 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 RBAK-201 - 714 1e-76 249.3 152.0 16 18 2.4e-09 3.6e-06 27.1 1.6 1 23 623 645 623 645 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 RBAK-201 - 714 1e-76 249.3 152.0 17 18 5.5e-10 8.3e-07 29.1 1.2 1 23 651 673 651 673 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 RBAK-201 - 714 1e-76 249.3 152.0 18 18 8.9e-07 0.0013 19.0 4.7 1 23 679 701 679 701 0.98 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 RBAK-201 - 714 2.9e-40 133.4 147.3 1 18 0.42 6.2e+02 1.7 0.1 2 16 136 150 135 152 0.86 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 RBAK-201 - 714 2.9e-40 133.4 147.3 2 18 0.44 6.5e+02 1.7 1.0 2 12 164 174 164 180 0.84 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 RBAK-201 - 714 2.9e-40 133.4 147.3 3 18 4.1e-05 0.061 14.2 3.0 1 23 261 283 261 284 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 RBAK-201 - 714 2.9e-40 133.4 147.3 4 18 9.3e-07 0.0014 19.3 0.6 1 23 289 311 289 312 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 RBAK-201 - 714 2.9e-40 133.4 147.3 5 18 7.8e-06 0.012 16.4 5.2 1 23 317 339 317 340 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 RBAK-201 - 714 2.9e-40 133.4 147.3 6 18 8.5e-05 0.13 13.2 4.7 1 23 345 367 345 368 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 RBAK-201 - 714 2.9e-40 133.4 147.3 7 18 1.5e-07 0.00022 21.8 0.6 1 23 373 395 373 396 0.97 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 RBAK-201 - 714 2.9e-40 133.4 147.3 8 18 1.1e-05 0.016 16.0 1.3 1 23 401 423 401 424 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 RBAK-201 - 714 2.9e-40 133.4 147.3 9 18 8e-05 0.12 13.3 1.4 1 23 429 451 429 452 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 RBAK-201 - 714 2.9e-40 133.4 147.3 10 18 1.4e-05 0.021 15.6 0.4 1 23 457 479 457 480 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 RBAK-201 - 714 2.9e-40 133.4 147.3 11 18 0.46 6.9e+02 1.6 2.1 1 23 485 505 485 506 0.79 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 RBAK-201 - 714 2.9e-40 133.4 147.3 12 18 0.0039 5.8 8.0 0.1 1 19 511 529 511 531 0.89 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 RBAK-201 - 714 2.9e-40 133.4 147.3 13 18 0.00042 0.63 11.0 0.8 1 23 539 561 539 562 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 RBAK-201 - 714 2.9e-40 133.4 147.3 14 18 4e-05 0.059 14.2 2.2 2 23 568 589 567 590 0.90 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 RBAK-201 - 714 2.9e-40 133.4 147.3 15 18 0.0014 2.1 9.4 2.5 1 23 595 617 595 618 0.85 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 RBAK-201 - 714 2.9e-40 133.4 147.3 16 18 3.6e-06 0.0055 17.5 1.4 1 23 623 645 623 646 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 RBAK-201 - 714 2.9e-40 133.4 147.3 17 18 2.3e-06 0.0035 18.1 1.1 1 23 651 673 651 674 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 RBAK-201 - 714 2.9e-40 133.4 147.3 18 18 0.0012 1.8 9.6 3.7 1 23 679 701 679 702 0.95 C2H2-type zinc finger KRAB PF01352.27 42 RBAK-201 - 714 1.2e-23 82.5 0.2 1 1 1.5e-26 2.3e-23 81.6 0.2 1 42 7 48 7 48 0.99 KRAB box zf-C2H2_6 PF13912.6 27 RBAK-201 - 714 8.6e-20 70.3 152.7 1 18 0.049 73 3.5 0.1 1 14 134 147 134 152 0.86 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 RBAK-201 - 714 8.6e-20 70.3 152.7 2 18 0.01 15 5.7 0.4 3 12 164 173 164 173 0.91 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 RBAK-201 - 714 8.6e-20 70.3 152.7 3 18 0.0066 9.9 6.3 5.1 2 11 261 270 261 272 0.96 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 RBAK-201 - 714 8.6e-20 70.3 152.7 4 18 8.4e-06 0.012 15.5 0.9 2 26 289 313 289 314 0.92 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 RBAK-201 - 714 8.6e-20 70.3 152.7 5 18 0.039 58 3.9 7.2 2 24 317 339 317 342 0.76 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 RBAK-201 - 714 8.6e-20 70.3 152.7 6 18 0.0016 2.3 8.3 3.8 2 12 345 355 345 370 0.73 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 RBAK-201 - 714 8.6e-20 70.3 152.7 7 18 8e-06 0.012 15.6 0.7 2 24 373 395 373 398 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 RBAK-201 - 714 8.6e-20 70.3 152.7 8 18 0.0002 0.3 11.1 1.6 2 24 401 423 400 426 0.92 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 RBAK-201 - 714 8.6e-20 70.3 152.7 9 18 0.003 4.4 7.4 1.4 2 25 429 452 429 454 0.85 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 RBAK-201 - 714 8.6e-20 70.3 152.7 10 18 0.00012 0.18 11.8 0.5 2 12 457 467 457 482 0.78 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 RBAK-201 - 714 8.6e-20 70.3 152.7 11 18 0.0085 13 5.9 0.9 2 9 485 492 484 493 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 RBAK-201 - 714 8.6e-20 70.3 152.7 12 18 0.001 1.5 8.9 1.1 2 11 511 520 511 520 0.97 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 RBAK-201 - 714 8.6e-20 70.3 152.7 13 18 0.00038 0.57 10.3 1.1 2 13 539 550 538 564 0.79 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 RBAK-201 - 714 8.6e-20 70.3 152.7 14 18 0.00093 1.4 9.0 2.1 2 21 567 586 567 591 0.79 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 RBAK-201 - 714 8.6e-20 70.3 152.7 15 18 0.25 3.7e+02 1.3 2.0 2 12 595 605 595 606 0.90 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 RBAK-201 - 714 8.6e-20 70.3 152.7 16 18 3.2e-06 0.0047 16.9 1.4 2 25 623 646 623 648 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 RBAK-201 - 714 8.6e-20 70.3 152.7 17 18 0.00018 0.26 11.3 0.7 2 12 651 661 651 675 0.89 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 RBAK-201 - 714 8.6e-20 70.3 152.7 18 18 0.0042 6.3 6.9 3.9 2 25 679 702 679 704 0.83 C2H2-type zinc finger Zn-ribbon_8 PF09723.10 40 RBAK-201 - 714 5.6e-14 52.0 102.2 1 14 0.0021 3.2 8.0 0.6 8 35 137 171 134 177 0.77 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 RBAK-201 - 714 5.6e-14 52.0 102.2 2 14 0.012 18 5.6 7.1 6 35 261 297 256 301 0.86 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 RBAK-201 - 714 5.6e-14 52.0 102.2 3 14 0.00025 0.37 10.9 5.8 6 35 289 326 288 331 0.82 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 RBAK-201 - 714 5.6e-14 52.0 102.2 4 14 0.028 42 4.4 10.5 6 34 317 352 315 357 0.80 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 RBAK-201 - 714 5.6e-14 52.0 102.2 5 14 0.0013 2 8.6 7.0 6 38 345 384 344 386 0.84 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 RBAK-201 - 714 5.6e-14 52.0 102.2 6 14 0.00062 0.92 9.7 3.8 6 35 373 409 371 414 0.74 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 RBAK-201 - 714 5.6e-14 52.0 102.2 7 14 0.0018 2.7 8.2 4.8 6 36 401 438 400 442 0.85 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 RBAK-201 - 714 5.6e-14 52.0 102.2 8 14 5.9e-06 0.0088 16.1 2.2 6 34 457 492 456 496 0.85 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 RBAK-201 - 714 5.6e-14 52.0 102.2 9 14 0.0015 2.2 8.5 0.1 6 22 511 527 510 534 0.77 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 RBAK-201 - 714 5.6e-14 52.0 102.2 10 14 0.0008 1.2 9.3 3.7 6 34 539 574 538 576 0.79 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 RBAK-201 - 714 5.6e-14 52.0 102.2 11 14 0.00041 0.62 10.2 3.7 6 34 567 602 566 609 0.89 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 RBAK-201 - 714 5.6e-14 52.0 102.2 12 14 0.00021 0.31 11.2 5.0 6 34 623 658 622 663 0.78 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 RBAK-201 - 714 5.6e-14 52.0 102.2 13 14 0.0029 4.3 7.5 0.7 6 16 651 661 650 669 0.89 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 RBAK-201 - 714 5.6e-14 52.0 102.2 14 14 0.0017 2.5 8.3 1.1 6 21 679 694 677 701 0.83 Zinc ribbon domain zf-C2H2_jaz PF12171.8 27 RBAK-201 - 714 6.4e-08 32.7 103.5 1 18 0.1 1.5e+02 2.8 0.0 2 17 135 150 134 152 0.88 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 RBAK-201 - 714 6.4e-08 32.7 103.5 2 18 0.25 3.8e+02 1.5 0.1 3 15 164 176 162 177 0.88 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 RBAK-201 - 714 6.4e-08 32.7 103.5 3 18 0.23 3.4e+02 1.7 1.7 2 11 261 270 260 281 0.76 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 RBAK-201 - 714 6.4e-08 32.7 103.5 4 18 0.0014 2.1 8.7 0.1 2 24 289 311 288 312 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 RBAK-201 - 714 6.4e-08 32.7 103.5 5 18 0.2 3e+02 1.9 2.5 2 24 317 339 316 340 0.86 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 RBAK-201 - 714 6.4e-08 32.7 103.5 6 18 0.14 2.2e+02 2.3 0.5 2 11 345 354 344 366 0.91 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 RBAK-201 - 714 6.4e-08 32.7 103.5 7 18 0.00056 0.83 10.0 0.1 2 24 373 395 372 395 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 RBAK-201 - 714 6.4e-08 32.7 103.5 8 18 0.012 18 5.8 1.2 2 24 401 423 400 423 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 RBAK-201 - 714 6.4e-08 32.7 103.5 9 18 0.0026 3.9 7.9 0.2 4 24 431 451 428 452 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 RBAK-201 - 714 6.4e-08 32.7 103.5 10 18 0.0039 5.8 7.3 0.2 2 22 457 477 456 477 0.91 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 RBAK-201 - 714 6.4e-08 32.7 103.5 11 18 3.3 5e+03 -2.0 0.1 2 9 485 492 484 493 0.85 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 RBAK-201 - 714 6.4e-08 32.7 103.5 12 18 0.009 13 6.2 0.1 2 20 511 529 510 530 0.91 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 RBAK-201 - 714 6.4e-08 32.7 103.5 13 18 0.0015 2.3 8.6 1.7 2 24 539 561 538 562 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 RBAK-201 - 714 6.4e-08 32.7 103.5 14 18 0.04 59 4.1 0.2 4 20 569 585 567 587 0.85 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 RBAK-201 - 714 6.4e-08 32.7 103.5 15 18 0.17 2.5e+02 2.1 0.9 2 12 595 605 594 613 0.83 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 RBAK-201 - 714 6.4e-08 32.7 103.5 16 18 0.00032 0.48 10.8 0.3 2 24 623 645 622 646 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 RBAK-201 - 714 6.4e-08 32.7 103.5 17 18 0.0044 6.5 7.2 0.6 2 24 651 673 650 674 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 RBAK-201 - 714 6.4e-08 32.7 103.5 18 18 0.0018 2.7 8.4 1.7 2 22 679 699 678 699 0.93 Zinc-finger double-stranded RNA-binding # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/RBAK-201.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/RBAK-201.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/RBAK-201.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/RBAK-201.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/RBAK-201.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:56:17 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 RBAK-202 - 714 2.8e-94 305.7 148.5 1 21 2.2 3.3e+03 -1.2 0.0 15 22 135 142 128 144 0.84 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 RBAK-202 - 714 2.8e-94 305.7 148.5 2 21 0.26 3.8e+02 1.8 0.3 16 24 164 172 159 173 0.87 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 RBAK-202 - 714 2.8e-94 305.7 148.5 3 21 6 9e+03 -2.6 0.1 12 20 202 210 202 213 0.79 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 RBAK-202 - 714 2.8e-94 305.7 148.5 4 21 7 1.1e+04 -2.8 0.1 11 16 229 234 223 234 0.77 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 RBAK-202 - 714 2.8e-94 305.7 148.5 5 21 8.1e-05 0.12 12.8 0.2 11 24 257 270 252 270 0.84 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 RBAK-202 - 714 2.8e-94 305.7 148.5 6 21 1.5e-09 2.2e-06 27.8 0.2 5 25 279 299 277 300 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 RBAK-202 - 714 2.8e-94 305.7 148.5 7 21 4.7e-08 7e-05 23.1 1.6 2 24 304 326 303 326 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 RBAK-202 - 714 2.8e-94 305.7 148.5 8 21 2.5e-11 3.8e-08 33.4 2.0 1 24 331 354 331 354 0.97 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 RBAK-202 - 714 2.8e-94 305.7 148.5 9 21 1.9e-09 2.8e-06 27.5 1.4 1 25 359 383 359 384 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 RBAK-202 - 714 2.8e-94 305.7 148.5 10 21 8.8e-10 1.3e-06 28.5 0.8 1 24 387 410 387 412 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 RBAK-202 - 714 2.8e-94 305.7 148.5 11 21 3.1e-11 4.6e-08 33.1 1.0 4 25 418 439 416 440 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 RBAK-202 - 714 2.8e-94 305.7 148.5 12 21 1.9e-08 2.8e-05 24.3 1.1 2 25 444 467 443 467 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 RBAK-202 - 714 2.8e-94 305.7 148.5 13 21 1.9e-07 0.00029 21.1 1.9 2 23 472 493 471 494 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 RBAK-202 - 714 2.8e-94 305.7 148.5 14 21 5.2e-06 0.0078 16.6 1.4 9 24 505 520 497 521 0.80 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 RBAK-202 - 714 2.8e-94 305.7 148.5 15 21 0.00058 0.87 10.1 0.4 11 25 535 549 529 550 0.89 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 RBAK-202 - 714 2.8e-94 305.7 148.5 16 21 6.6e-07 0.00098 19.4 4.1 2 26 554 578 553 578 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 RBAK-202 - 714 2.8e-94 305.7 148.5 17 21 1e-11 1.5e-08 34.7 1.3 2 25 582 605 581 606 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 RBAK-202 - 714 2.8e-94 305.7 148.5 18 21 1.1e-09 1.7e-06 28.2 1.6 2 25 610 633 609 634 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 RBAK-202 - 714 2.8e-94 305.7 148.5 19 21 1.3e-10 1.9e-07 31.2 0.4 1 25 637 661 637 662 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 RBAK-202 - 714 2.8e-94 305.7 148.5 20 21 7.9e-09 1.2e-05 25.5 5.6 2 26 666 690 665 690 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 RBAK-202 - 714 2.8e-94 305.7 148.5 21 21 1.2 1.8e+03 -0.3 0.2 1 10 693 702 693 706 0.85 Zinc-finger double domain zf-C2H2 PF00096.26 23 RBAK-202 - 714 1e-76 249.3 152.0 1 18 0.61 9.1e+02 0.7 0.0 1 17 135 151 135 152 0.82 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 RBAK-202 - 714 1e-76 249.3 152.0 2 18 0.083 1.2e+02 3.4 0.3 2 10 164 172 163 175 0.90 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 RBAK-202 - 714 1e-76 249.3 152.0 3 18 5.2e-07 0.00078 19.8 2.8 1 23 261 283 261 283 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 RBAK-202 - 714 1e-76 249.3 152.0 4 18 2.4e-09 3.6e-06 27.1 0.8 1 23 289 311 289 311 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 RBAK-202 - 714 1e-76 249.3 152.0 5 18 9.7e-08 0.00015 22.1 6.3 1 23 317 339 317 339 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 RBAK-202 - 714 1e-76 249.3 152.0 6 18 1.6e-07 0.00024 21.4 5.5 1 23 345 367 345 367 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 RBAK-202 - 714 1e-76 249.3 152.0 7 18 4e-10 5.9e-07 29.6 0.8 1 23 373 395 373 395 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 RBAK-202 - 714 1e-76 249.3 152.0 8 18 3.5e-09 5.2e-06 26.6 2.5 1 23 401 423 401 423 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 RBAK-202 - 714 1e-76 249.3 152.0 9 18 7.7e-08 0.00012 22.4 2.0 1 23 429 451 429 451 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 RBAK-202 - 714 1e-76 249.3 152.0 10 18 2.3e-07 0.00034 20.9 0.6 1 23 457 479 457 479 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 RBAK-202 - 714 1e-76 249.3 152.0 11 18 0.36 5.4e+02 1.4 0.8 1 9 485 493 485 505 0.79 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 RBAK-202 - 714 1e-76 249.3 152.0 12 18 0.0031 4.6 7.9 0.2 1 10 511 520 511 530 0.89 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 RBAK-202 - 714 1e-76 249.3 152.0 13 18 8.8e-06 0.013 15.9 1.0 1 23 539 561 539 561 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 RBAK-202 - 714 1e-76 249.3 152.0 14 18 3.2e-08 4.7e-05 23.6 2.6 3 23 569 589 567 589 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 RBAK-202 - 714 1e-76 249.3 152.0 15 18 2.5e-07 0.00037 20.8 3.1 1 23 595 617 595 617 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 RBAK-202 - 714 1e-76 249.3 152.0 16 18 2.4e-09 3.6e-06 27.1 1.6 1 23 623 645 623 645 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 RBAK-202 - 714 1e-76 249.3 152.0 17 18 5.5e-10 8.3e-07 29.1 1.2 1 23 651 673 651 673 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 RBAK-202 - 714 1e-76 249.3 152.0 18 18 8.9e-07 0.0013 19.0 4.7 1 23 679 701 679 701 0.98 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 RBAK-202 - 714 2.9e-40 133.4 147.3 1 18 0.42 6.2e+02 1.7 0.1 2 16 136 150 135 152 0.86 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 RBAK-202 - 714 2.9e-40 133.4 147.3 2 18 0.44 6.5e+02 1.7 1.0 2 12 164 174 164 180 0.84 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 RBAK-202 - 714 2.9e-40 133.4 147.3 3 18 4.1e-05 0.061 14.2 3.0 1 23 261 283 261 284 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 RBAK-202 - 714 2.9e-40 133.4 147.3 4 18 9.3e-07 0.0014 19.3 0.6 1 23 289 311 289 312 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 RBAK-202 - 714 2.9e-40 133.4 147.3 5 18 7.8e-06 0.012 16.4 5.2 1 23 317 339 317 340 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 RBAK-202 - 714 2.9e-40 133.4 147.3 6 18 8.5e-05 0.13 13.2 4.7 1 23 345 367 345 368 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 RBAK-202 - 714 2.9e-40 133.4 147.3 7 18 1.5e-07 0.00022 21.8 0.6 1 23 373 395 373 396 0.97 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 RBAK-202 - 714 2.9e-40 133.4 147.3 8 18 1.1e-05 0.016 16.0 1.3 1 23 401 423 401 424 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 RBAK-202 - 714 2.9e-40 133.4 147.3 9 18 8e-05 0.12 13.3 1.4 1 23 429 451 429 452 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 RBAK-202 - 714 2.9e-40 133.4 147.3 10 18 1.4e-05 0.021 15.6 0.4 1 23 457 479 457 480 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 RBAK-202 - 714 2.9e-40 133.4 147.3 11 18 0.46 6.9e+02 1.6 2.1 1 23 485 505 485 506 0.79 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 RBAK-202 - 714 2.9e-40 133.4 147.3 12 18 0.0039 5.8 8.0 0.1 1 19 511 529 511 531 0.89 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 RBAK-202 - 714 2.9e-40 133.4 147.3 13 18 0.00042 0.63 11.0 0.8 1 23 539 561 539 562 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 RBAK-202 - 714 2.9e-40 133.4 147.3 14 18 4e-05 0.059 14.2 2.2 2 23 568 589 567 590 0.90 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 RBAK-202 - 714 2.9e-40 133.4 147.3 15 18 0.0014 2.1 9.4 2.5 1 23 595 617 595 618 0.85 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 RBAK-202 - 714 2.9e-40 133.4 147.3 16 18 3.6e-06 0.0055 17.5 1.4 1 23 623 645 623 646 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 RBAK-202 - 714 2.9e-40 133.4 147.3 17 18 2.3e-06 0.0035 18.1 1.1 1 23 651 673 651 674 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 RBAK-202 - 714 2.9e-40 133.4 147.3 18 18 0.0012 1.8 9.6 3.7 1 23 679 701 679 702 0.95 C2H2-type zinc finger KRAB PF01352.27 42 RBAK-202 - 714 1.2e-23 82.5 0.2 1 1 1.5e-26 2.3e-23 81.6 0.2 1 42 7 48 7 48 0.99 KRAB box zf-C2H2_6 PF13912.6 27 RBAK-202 - 714 8.6e-20 70.3 152.7 1 18 0.049 73 3.5 0.1 1 14 134 147 134 152 0.86 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 RBAK-202 - 714 8.6e-20 70.3 152.7 2 18 0.01 15 5.7 0.4 3 12 164 173 164 173 0.91 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 RBAK-202 - 714 8.6e-20 70.3 152.7 3 18 0.0066 9.9 6.3 5.1 2 11 261 270 261 272 0.96 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 RBAK-202 - 714 8.6e-20 70.3 152.7 4 18 8.4e-06 0.012 15.5 0.9 2 26 289 313 289 314 0.92 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 RBAK-202 - 714 8.6e-20 70.3 152.7 5 18 0.039 58 3.9 7.2 2 24 317 339 317 342 0.76 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 RBAK-202 - 714 8.6e-20 70.3 152.7 6 18 0.0016 2.3 8.3 3.8 2 12 345 355 345 370 0.73 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 RBAK-202 - 714 8.6e-20 70.3 152.7 7 18 8e-06 0.012 15.6 0.7 2 24 373 395 373 398 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 RBAK-202 - 714 8.6e-20 70.3 152.7 8 18 0.0002 0.3 11.1 1.6 2 24 401 423 400 426 0.92 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 RBAK-202 - 714 8.6e-20 70.3 152.7 9 18 0.003 4.4 7.4 1.4 2 25 429 452 429 454 0.85 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 RBAK-202 - 714 8.6e-20 70.3 152.7 10 18 0.00012 0.18 11.8 0.5 2 12 457 467 457 482 0.78 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 RBAK-202 - 714 8.6e-20 70.3 152.7 11 18 0.0085 13 5.9 0.9 2 9 485 492 484 493 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 RBAK-202 - 714 8.6e-20 70.3 152.7 12 18 0.001 1.5 8.9 1.1 2 11 511 520 511 520 0.97 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 RBAK-202 - 714 8.6e-20 70.3 152.7 13 18 0.00038 0.57 10.3 1.1 2 13 539 550 538 564 0.79 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 RBAK-202 - 714 8.6e-20 70.3 152.7 14 18 0.00093 1.4 9.0 2.1 2 21 567 586 567 591 0.79 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 RBAK-202 - 714 8.6e-20 70.3 152.7 15 18 0.25 3.7e+02 1.3 2.0 2 12 595 605 595 606 0.90 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 RBAK-202 - 714 8.6e-20 70.3 152.7 16 18 3.2e-06 0.0047 16.9 1.4 2 25 623 646 623 648 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 RBAK-202 - 714 8.6e-20 70.3 152.7 17 18 0.00018 0.26 11.3 0.7 2 12 651 661 651 675 0.89 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 RBAK-202 - 714 8.6e-20 70.3 152.7 18 18 0.0042 6.3 6.9 3.9 2 25 679 702 679 704 0.83 C2H2-type zinc finger Zn-ribbon_8 PF09723.10 40 RBAK-202 - 714 5.6e-14 52.0 102.2 1 14 0.0021 3.2 8.0 0.6 8 35 137 171 134 177 0.77 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 RBAK-202 - 714 5.6e-14 52.0 102.2 2 14 0.012 18 5.6 7.1 6 35 261 297 256 301 0.86 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 RBAK-202 - 714 5.6e-14 52.0 102.2 3 14 0.00025 0.37 10.9 5.8 6 35 289 326 288 331 0.82 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 RBAK-202 - 714 5.6e-14 52.0 102.2 4 14 0.028 42 4.4 10.5 6 34 317 352 315 357 0.80 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 RBAK-202 - 714 5.6e-14 52.0 102.2 5 14 0.0013 2 8.6 7.0 6 38 345 384 344 386 0.84 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 RBAK-202 - 714 5.6e-14 52.0 102.2 6 14 0.00062 0.92 9.7 3.8 6 35 373 409 371 414 0.74 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 RBAK-202 - 714 5.6e-14 52.0 102.2 7 14 0.0018 2.7 8.2 4.8 6 36 401 438 400 442 0.85 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 RBAK-202 - 714 5.6e-14 52.0 102.2 8 14 5.9e-06 0.0088 16.1 2.2 6 34 457 492 456 496 0.85 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 RBAK-202 - 714 5.6e-14 52.0 102.2 9 14 0.0015 2.2 8.5 0.1 6 22 511 527 510 534 0.77 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 RBAK-202 - 714 5.6e-14 52.0 102.2 10 14 0.0008 1.2 9.3 3.7 6 34 539 574 538 576 0.79 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 RBAK-202 - 714 5.6e-14 52.0 102.2 11 14 0.00041 0.62 10.2 3.7 6 34 567 602 566 609 0.89 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 RBAK-202 - 714 5.6e-14 52.0 102.2 12 14 0.00021 0.31 11.2 5.0 6 34 623 658 622 663 0.78 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 RBAK-202 - 714 5.6e-14 52.0 102.2 13 14 0.0029 4.3 7.5 0.7 6 16 651 661 650 669 0.89 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 RBAK-202 - 714 5.6e-14 52.0 102.2 14 14 0.0017 2.5 8.3 1.1 6 21 679 694 677 701 0.83 Zinc ribbon domain zf-C2H2_jaz PF12171.8 27 RBAK-202 - 714 6.4e-08 32.7 103.5 1 18 0.1 1.5e+02 2.8 0.0 2 17 135 150 134 152 0.88 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 RBAK-202 - 714 6.4e-08 32.7 103.5 2 18 0.25 3.8e+02 1.5 0.1 3 15 164 176 162 177 0.88 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 RBAK-202 - 714 6.4e-08 32.7 103.5 3 18 0.23 3.4e+02 1.7 1.7 2 11 261 270 260 281 0.76 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 RBAK-202 - 714 6.4e-08 32.7 103.5 4 18 0.0014 2.1 8.7 0.1 2 24 289 311 288 312 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 RBAK-202 - 714 6.4e-08 32.7 103.5 5 18 0.2 3e+02 1.9 2.5 2 24 317 339 316 340 0.86 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 RBAK-202 - 714 6.4e-08 32.7 103.5 6 18 0.14 2.2e+02 2.3 0.5 2 11 345 354 344 366 0.91 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 RBAK-202 - 714 6.4e-08 32.7 103.5 7 18 0.00056 0.83 10.0 0.1 2 24 373 395 372 395 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 RBAK-202 - 714 6.4e-08 32.7 103.5 8 18 0.012 18 5.8 1.2 2 24 401 423 400 423 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 RBAK-202 - 714 6.4e-08 32.7 103.5 9 18 0.0026 3.9 7.9 0.2 4 24 431 451 428 452 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 RBAK-202 - 714 6.4e-08 32.7 103.5 10 18 0.0039 5.8 7.3 0.2 2 22 457 477 456 477 0.91 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 RBAK-202 - 714 6.4e-08 32.7 103.5 11 18 3.3 5e+03 -2.0 0.1 2 9 485 492 484 493 0.85 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 RBAK-202 - 714 6.4e-08 32.7 103.5 12 18 0.009 13 6.2 0.1 2 20 511 529 510 530 0.91 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 RBAK-202 - 714 6.4e-08 32.7 103.5 13 18 0.0015 2.3 8.6 1.7 2 24 539 561 538 562 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 RBAK-202 - 714 6.4e-08 32.7 103.5 14 18 0.04 59 4.1 0.2 4 20 569 585 567 587 0.85 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 RBAK-202 - 714 6.4e-08 32.7 103.5 15 18 0.17 2.5e+02 2.1 0.9 2 12 595 605 594 613 0.83 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 RBAK-202 - 714 6.4e-08 32.7 103.5 16 18 0.00032 0.48 10.8 0.3 2 24 623 645 622 646 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 RBAK-202 - 714 6.4e-08 32.7 103.5 17 18 0.0044 6.5 7.2 0.6 2 24 651 673 650 674 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 RBAK-202 - 714 6.4e-08 32.7 103.5 18 18 0.0018 2.7 8.4 1.7 2 22 679 699 678 699 0.93 Zinc-finger double-stranded RNA-binding # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/RBAK-202.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/RBAK-202.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/RBAK-202.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/RBAK-202.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/RBAK-202.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:56:18 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/RBAK-203.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/RBAK-203.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/RBAK-203.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/RBAK-203.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/RBAK-203.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:56:18 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-C2H2 PF00096.26 23 REPIN1-201 - 567 5.8e-70 228.1 107.2 1 15 0.00098 0.73 10.4 1.1 1 22 57 78 57 78 0.95 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 REPIN1-201 - 567 5.8e-70 228.1 107.2 2 15 3.2e-05 0.024 15.1 0.4 2 23 86 107 85 107 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 REPIN1-201 - 567 5.8e-70 228.1 107.2 3 15 3e-06 0.0022 18.3 0.1 1 23 116 138 116 138 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 REPIN1-201 - 567 5.8e-70 228.1 107.2 4 15 0.00013 0.096 13.2 2.7 3 23 147 168 145 168 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 REPIN1-201 - 567 5.8e-70 228.1 107.2 5 15 3.7e-08 2.8e-05 24.3 0.0 1 23 177 199 177 199 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 REPIN1-201 - 567 5.8e-70 228.1 107.2 6 15 3.7e-05 0.028 14.9 3.9 1 23 236 258 236 258 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 REPIN1-201 - 567 5.8e-70 228.1 107.2 7 15 7.3e-08 5.4e-05 23.4 2.6 1 23 264 286 264 286 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 REPIN1-201 - 567 5.8e-70 228.1 107.2 8 15 1.7e-06 0.0013 19.1 2.4 1 23 292 314 292 314 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 REPIN1-201 - 567 5.8e-70 228.1 107.2 9 15 1.8e-06 0.0014 19.0 1.1 1 23 375 397 375 397 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 REPIN1-201 - 567 5.8e-70 228.1 107.2 10 15 2.9e-06 0.0022 18.4 0.9 1 23 403 425 403 425 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 REPIN1-201 - 567 5.8e-70 228.1 107.2 11 15 9.8e-07 0.00073 19.9 0.6 1 23 431 453 431 453 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 REPIN1-201 - 567 5.8e-70 228.1 107.2 12 15 2e-08 1.5e-05 25.2 0.5 1 23 459 481 459 481 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 REPIN1-201 - 567 5.8e-70 228.1 107.2 13 15 9.4e-11 7e-08 32.5 0.3 1 23 487 509 487 509 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 REPIN1-201 - 567 5.8e-70 228.1 107.2 14 15 2.2e-09 1.6e-06 28.2 0.9 1 23 515 537 515 537 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 REPIN1-201 - 567 5.8e-70 228.1 107.2 15 15 4.9e-05 0.037 14.5 0.6 1 23 543 565 543 565 0.96 Zinc finger, C2H2 type zf-H2C2_2 PF13465.6 26 REPIN1-201 - 567 2.2e-62 204.9 93.7 1 18 3.9 2.9e+03 -1.0 0.5 15 24 57 66 53 67 0.77 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 REPIN1-201 - 567 2.2e-62 204.9 93.7 2 18 0.091 68 4.1 3.6 14 26 84 96 60 96 0.70 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 REPIN1-201 - 567 2.2e-62 204.9 93.7 3 18 0.061 46 4.7 0.0 5 24 103 125 100 126 0.82 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 REPIN1-201 - 567 2.2e-62 204.9 93.7 4 18 0.00021 0.16 12.5 0.1 1 25 130 155 130 156 0.88 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 REPIN1-201 - 567 2.2e-62 204.9 93.7 5 18 0.0049 3.7 8.2 0.2 2 25 160 187 159 188 0.88 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 REPIN1-201 - 567 2.2e-62 204.9 93.7 6 18 3.8 2.8e+03 -1.0 0.1 2 9 192 199 191 202 0.89 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 REPIN1-201 - 567 2.2e-62 204.9 93.7 7 18 0.068 51 4.5 0.8 12 26 233 247 231 247 0.89 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 REPIN1-201 - 567 2.2e-62 204.9 93.7 8 18 3.8e-12 2.8e-09 37.0 0.7 1 26 250 275 250 275 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 REPIN1-201 - 567 2.2e-62 204.9 93.7 9 18 1.9e-09 1.5e-06 28.4 3.5 2 26 279 303 278 303 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 REPIN1-201 - 567 2.2e-62 204.9 93.7 10 18 8 6e+03 -2.0 0.2 1 10 306 315 306 318 0.85 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 REPIN1-201 - 567 2.2e-62 204.9 93.7 11 18 0.095 71 4.1 0.1 11 24 371 384 362 385 0.81 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 REPIN1-201 - 567 2.2e-62 204.9 93.7 12 18 4.4e-10 3.3e-07 30.4 0.3 2 25 390 413 390 414 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 REPIN1-201 - 567 2.2e-62 204.9 93.7 13 18 5.6e-09 4.2e-06 26.9 0.3 1 25 417 441 417 442 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 REPIN1-201 - 567 2.2e-62 204.9 93.7 14 18 7.8e-08 5.8e-05 23.3 1.1 1 26 445 470 445 470 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 REPIN1-201 - 567 2.2e-62 204.9 93.7 15 18 1.8e-11 1.3e-08 34.8 0.1 2 25 474 497 473 498 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 REPIN1-201 - 567 2.2e-62 204.9 93.7 16 18 3.6e-11 2.7e-08 33.9 0.1 1 25 501 525 501 526 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 REPIN1-201 - 567 2.2e-62 204.9 93.7 17 18 0.0011 0.82 10.2 0.1 1 24 529 552 529 553 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 REPIN1-201 - 567 2.2e-62 204.9 93.7 18 18 10 7.4e+03 -2.3 0.1 4 9 560 565 558 567 0.79 Zinc-finger double domain zf-C2H2_4 PF13894.6 24 REPIN1-201 - 567 5.8e-43 141.8 107.1 1 15 0.3 2.3e+02 3.1 3.1 1 21 57 77 57 79 0.85 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 REPIN1-201 - 567 5.8e-43 141.8 107.1 2 15 0.003 2.3 9.3 0.4 2 23 86 107 85 108 0.80 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 REPIN1-201 - 567 5.8e-43 141.8 107.1 3 15 2.9e-05 0.021 15.6 0.4 1 23 116 138 116 139 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 REPIN1-201 - 567 5.8e-43 141.8 107.1 4 15 1.4e-05 0.01 16.6 2.5 2 24 146 168 145 168 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 REPIN1-201 - 567 5.8e-43 141.8 107.1 5 15 5.3e-05 0.04 14.8 0.1 1 23 177 199 177 200 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 REPIN1-201 - 567 5.8e-43 141.8 107.1 6 15 0.002 1.5 9.9 3.3 1 23 236 258 236 259 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 REPIN1-201 - 567 5.8e-43 141.8 107.1 7 15 1.2e-05 0.0092 16.7 1.5 1 23 264 286 264 287 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 REPIN1-201 - 567 5.8e-43 141.8 107.1 8 15 8.6e-05 0.064 14.1 2.1 1 23 292 314 292 315 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 REPIN1-201 - 567 5.8e-43 141.8 107.1 9 15 9.3e-05 0.069 14.0 0.7 1 23 375 397 375 398 0.85 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 REPIN1-201 - 567 5.8e-43 141.8 107.1 10 15 0.00046 0.35 11.8 1.0 1 23 403 425 403 426 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 REPIN1-201 - 567 5.8e-43 141.8 107.1 11 15 3.5e-05 0.026 15.3 0.4 1 23 431 453 431 454 0.91 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 REPIN1-201 - 567 5.8e-43 141.8 107.1 12 15 0.00023 0.17 12.8 0.5 1 23 459 481 459 482 0.87 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 REPIN1-201 - 567 5.8e-43 141.8 107.1 13 15 5.1e-06 0.0038 17.9 0.3 1 23 487 509 487 510 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 REPIN1-201 - 567 5.8e-43 141.8 107.1 14 15 1e-06 0.00076 20.1 0.4 1 23 515 537 515 538 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 REPIN1-201 - 567 5.8e-43 141.8 107.1 15 15 3.1e-06 0.0023 18.6 0.5 1 23 543 565 543 566 0.97 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 REPIN1-201 - 567 4.1e-15 55.3 84.0 1 15 0.97 7.3e+02 0.3 0.5 1 17 56 72 56 79 0.77 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 REPIN1-201 - 567 4.1e-15 55.3 84.0 2 15 0.037 27 4.9 0.1 4 12 87 95 86 96 0.91 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 REPIN1-201 - 567 4.1e-15 55.3 84.0 3 15 0.0028 2.1 8.5 0.2 2 25 116 139 116 141 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 REPIN1-201 - 567 4.1e-15 55.3 84.0 4 15 0.0022 1.6 8.8 0.3 4 25 147 169 146 171 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 REPIN1-201 - 567 4.1e-15 55.3 84.0 5 15 0.014 11 6.2 0.0 2 24 177 199 177 202 0.92 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 REPIN1-201 - 567 4.1e-15 55.3 84.0 6 15 0.0078 5.8 7.0 1.6 2 24 236 258 236 261 0.92 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 REPIN1-201 - 567 4.1e-15 55.3 84.0 7 15 0.0015 1.1 9.4 0.4 2 12 264 274 264 287 0.85 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 REPIN1-201 - 567 4.1e-15 55.3 84.0 8 15 0.0015 1.1 9.3 1.7 2 25 292 315 292 317 0.85 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 REPIN1-201 - 567 4.1e-15 55.3 84.0 9 15 0.0035 2.6 8.1 0.3 2 24 375 397 374 400 0.92 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 REPIN1-201 - 567 4.1e-15 55.3 84.0 10 15 0.012 9.1 6.4 1.4 2 24 403 425 403 428 0.87 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 REPIN1-201 - 567 4.1e-15 55.3 84.0 11 15 0.00088 0.66 10.0 0.3 2 24 431 453 431 455 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 REPIN1-201 - 567 4.1e-15 55.3 84.0 12 15 0.2 1.5e+02 2.6 0.3 2 12 459 469 459 472 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 REPIN1-201 - 567 4.1e-15 55.3 84.0 13 15 0.01 7.8 6.6 0.1 2 24 487 509 487 512 0.89 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 REPIN1-201 - 567 4.1e-15 55.3 84.0 14 15 3.4e-05 0.025 14.6 0.1 2 24 515 537 515 539 0.96 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 REPIN1-201 - 567 4.1e-15 55.3 84.0 15 15 0.025 19 5.4 0.8 1 12 542 553 542 565 0.76 C2H2-type zinc finger Zn-ribbon_8 PF09723.10 40 REPIN1-201 - 567 1.4e-13 50.7 61.1 1 11 0.0055 4.1 7.6 1.8 7 36 58 94 56 97 0.77 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 REPIN1-201 - 567 1.4e-13 50.7 61.1 2 11 0.00011 0.078 13.1 0.1 6 34 116 152 115 157 0.77 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 REPIN1-201 - 567 1.4e-13 50.7 61.1 3 11 0.12 88 3.3 0.0 6 18 177 189 176 197 0.83 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 REPIN1-201 - 567 1.4e-13 50.7 61.1 4 11 0.00025 0.19 11.9 4.7 6 35 236 272 235 276 0.86 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 REPIN1-201 - 567 1.4e-13 50.7 61.1 5 11 0.019 14 5.9 0.1 6 16 292 302 281 320 0.80 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 REPIN1-201 - 567 1.4e-13 50.7 61.1 6 11 0.00093 0.69 10.1 2.6 6 36 375 412 374 416 0.78 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 REPIN1-201 - 567 1.4e-13 50.7 61.1 7 11 1.4e-05 0.01 15.9 2.0 6 37 431 469 430 472 0.79 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 REPIN1-201 - 567 1.4e-13 50.7 61.1 8 11 1e-05 0.0076 16.3 1.4 6 35 459 495 458 499 0.88 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 REPIN1-201 - 567 1.4e-13 50.7 61.1 9 11 5.9e-05 0.044 13.9 1.4 6 34 487 522 486 528 0.84 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 REPIN1-201 - 567 1.4e-13 50.7 61.1 10 11 0.18 1.3e+02 2.7 4.5 6 34 515 550 514 553 0.73 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 REPIN1-201 - 567 1.4e-13 50.7 61.1 11 11 0.38 2.9e+02 1.7 1.0 6 16 543 553 542 566 0.76 Zinc ribbon domain zf_UBZ PF18439.1 32 REPIN1-201 - 567 8.3e-13 47.7 51.4 1 15 0.22 1.7e+02 1.9 0.0 4 15 58 69 56 72 0.86 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 REPIN1-201 - 567 8.3e-13 47.7 51.4 2 15 0.05 38 4.0 0.1 4 12 86 94 84 99 0.86 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 REPIN1-201 - 567 8.3e-13 47.7 51.4 3 15 2.1 1.6e+03 -1.2 0.0 3 12 116 125 115 131 0.82 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 REPIN1-201 - 567 8.3e-13 47.7 51.4 4 15 0.16 1.2e+02 2.4 0.1 4 18 146 161 144 164 0.75 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 REPIN1-201 - 567 8.3e-13 47.7 51.4 5 15 0.002 1.5 8.5 0.1 3 30 177 205 175 207 0.87 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 REPIN1-201 - 567 8.3e-13 47.7 51.4 6 15 0.48 3.6e+02 0.9 0.6 3 12 236 245 235 254 0.86 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 REPIN1-201 - 567 8.3e-13 47.7 51.4 7 15 0.011 8.4 6.1 0.2 4 13 265 274 263 283 0.81 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 REPIN1-201 - 567 8.3e-13 47.7 51.4 8 15 0.0062 4.7 6.9 0.2 3 20 292 310 290 311 0.85 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 REPIN1-201 - 567 8.3e-13 47.7 51.4 9 15 0.014 11 5.8 0.0 2 13 374 385 373 394 0.82 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 REPIN1-201 - 567 8.3e-13 47.7 51.4 10 15 0.013 9.4 5.9 0.1 3 12 403 412 401 417 0.90 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 REPIN1-201 - 567 8.3e-13 47.7 51.4 11 15 0.0095 7.1 6.3 0.1 3 15 431 443 429 450 0.81 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 REPIN1-201 - 567 8.3e-13 47.7 51.4 12 15 0.011 7.9 6.2 0.0 3 12 459 468 457 477 0.88 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 REPIN1-201 - 567 8.3e-13 47.7 51.4 13 15 0.00098 0.74 9.5 0.1 3 20 487 505 485 506 0.79 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 REPIN1-201 - 567 8.3e-13 47.7 51.4 14 15 0.014 11 5.8 0.1 3 15 515 527 513 534 0.80 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 REPIN1-201 - 567 8.3e-13 47.7 51.4 15 15 0.032 24 4.7 0.2 3 17 543 557 541 562 0.80 Ubiquitin-Binding Zinc Finger FYDLN_acid PF09538.10 106 REPIN1-201 - 567 2.6e-07 31.3 35.4 1 12 0.023 17 6.1 0.0 24 52 82 110 80 114 0.81 Protein of unknown function (FYDLN_acid) FYDLN_acid PF09538.10 106 REPIN1-201 - 567 2.6e-07 31.3 35.4 2 12 0.0078 5.8 7.6 0.2 24 43 142 161 140 175 0.76 Protein of unknown function (FYDLN_acid) FYDLN_acid PF09538.10 106 REPIN1-201 - 567 2.6e-07 31.3 35.4 3 12 0.17 1.2e+02 3.4 0.0 25 52 175 203 172 217 0.62 Protein of unknown function (FYDLN_acid) FYDLN_acid PF09538.10 106 REPIN1-201 - 567 2.6e-07 31.3 35.4 4 12 1.4 1e+03 0.4 0.1 25 41 234 250 230 262 0.73 Protein of unknown function (FYDLN_acid) FYDLN_acid PF09538.10 106 REPIN1-201 - 567 2.6e-07 31.3 35.4 5 12 0.046 34 5.2 2.3 24 48 261 285 237 293 0.84 Protein of unknown function (FYDLN_acid) FYDLN_acid PF09538.10 106 REPIN1-201 - 567 2.6e-07 31.3 35.4 6 12 0.23 1.7e+02 2.9 1.7 12 43 266 280 264 329 0.61 Protein of unknown function (FYDLN_acid) FYDLN_acid PF09538.10 106 REPIN1-201 - 567 2.6e-07 31.3 35.4 7 12 3.8 2.8e+03 -1.0 0.0 29 48 377 396 375 401 0.75 Protein of unknown function (FYDLN_acid) FYDLN_acid PF09538.10 106 REPIN1-201 - 567 2.6e-07 31.3 35.4 8 12 0.29 2.2e+02 2.6 0.1 24 41 400 417 398 430 0.75 Protein of unknown function (FYDLN_acid) FYDLN_acid PF09538.10 106 REPIN1-201 - 567 2.6e-07 31.3 35.4 9 12 0.013 10 6.9 0.4 25 46 457 478 432 485 0.82 Protein of unknown function (FYDLN_acid) FYDLN_acid PF09538.10 106 REPIN1-201 - 567 2.6e-07 31.3 35.4 10 12 0.01 7.5 7.3 0.1 24 45 484 505 481 513 0.77 Protein of unknown function (FYDLN_acid) FYDLN_acid PF09538.10 106 REPIN1-201 - 567 2.6e-07 31.3 35.4 11 12 0.12 88 3.9 0.1 24 42 512 530 510 543 0.76 Protein of unknown function (FYDLN_acid) FYDLN_acid PF09538.10 106 REPIN1-201 - 567 2.6e-07 31.3 35.4 12 12 4.9 3.6e+03 -1.3 0.0 28 42 544 558 543 566 0.71 Protein of unknown function (FYDLN_acid) # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/REPIN1-201.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/REPIN1-201.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/REPIN1-201.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/REPIN1-201.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/REPIN1-201.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:56:19 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-C2H2 PF00096.26 23 REPIN1-202 - 567 5.8e-70 228.1 107.2 1 15 0.00098 0.73 10.4 1.1 1 22 57 78 57 78 0.95 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 REPIN1-202 - 567 5.8e-70 228.1 107.2 2 15 3.2e-05 0.024 15.1 0.4 2 23 86 107 85 107 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 REPIN1-202 - 567 5.8e-70 228.1 107.2 3 15 3e-06 0.0022 18.3 0.1 1 23 116 138 116 138 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 REPIN1-202 - 567 5.8e-70 228.1 107.2 4 15 0.00013 0.096 13.2 2.7 3 23 147 168 145 168 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 REPIN1-202 - 567 5.8e-70 228.1 107.2 5 15 3.7e-08 2.8e-05 24.3 0.0 1 23 177 199 177 199 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 REPIN1-202 - 567 5.8e-70 228.1 107.2 6 15 3.7e-05 0.028 14.9 3.9 1 23 236 258 236 258 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 REPIN1-202 - 567 5.8e-70 228.1 107.2 7 15 7.3e-08 5.4e-05 23.4 2.6 1 23 264 286 264 286 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 REPIN1-202 - 567 5.8e-70 228.1 107.2 8 15 1.7e-06 0.0013 19.1 2.4 1 23 292 314 292 314 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 REPIN1-202 - 567 5.8e-70 228.1 107.2 9 15 1.8e-06 0.0014 19.0 1.1 1 23 375 397 375 397 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 REPIN1-202 - 567 5.8e-70 228.1 107.2 10 15 2.9e-06 0.0022 18.4 0.9 1 23 403 425 403 425 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 REPIN1-202 - 567 5.8e-70 228.1 107.2 11 15 9.8e-07 0.00073 19.9 0.6 1 23 431 453 431 453 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 REPIN1-202 - 567 5.8e-70 228.1 107.2 12 15 2e-08 1.5e-05 25.2 0.5 1 23 459 481 459 481 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 REPIN1-202 - 567 5.8e-70 228.1 107.2 13 15 9.4e-11 7e-08 32.5 0.3 1 23 487 509 487 509 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 REPIN1-202 - 567 5.8e-70 228.1 107.2 14 15 2.2e-09 1.6e-06 28.2 0.9 1 23 515 537 515 537 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 REPIN1-202 - 567 5.8e-70 228.1 107.2 15 15 4.9e-05 0.037 14.5 0.6 1 23 543 565 543 565 0.96 Zinc finger, C2H2 type zf-H2C2_2 PF13465.6 26 REPIN1-202 - 567 2.2e-62 204.9 93.7 1 18 3.9 2.9e+03 -1.0 0.5 15 24 57 66 53 67 0.77 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 REPIN1-202 - 567 2.2e-62 204.9 93.7 2 18 0.091 68 4.1 3.6 14 26 84 96 60 96 0.70 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 REPIN1-202 - 567 2.2e-62 204.9 93.7 3 18 0.061 46 4.7 0.0 5 24 103 125 100 126 0.82 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 REPIN1-202 - 567 2.2e-62 204.9 93.7 4 18 0.00021 0.16 12.5 0.1 1 25 130 155 130 156 0.88 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 REPIN1-202 - 567 2.2e-62 204.9 93.7 5 18 0.0049 3.7 8.2 0.2 2 25 160 187 159 188 0.88 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 REPIN1-202 - 567 2.2e-62 204.9 93.7 6 18 3.8 2.8e+03 -1.0 0.1 2 9 192 199 191 202 0.89 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 REPIN1-202 - 567 2.2e-62 204.9 93.7 7 18 0.068 51 4.5 0.8 12 26 233 247 231 247 0.89 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 REPIN1-202 - 567 2.2e-62 204.9 93.7 8 18 3.8e-12 2.8e-09 37.0 0.7 1 26 250 275 250 275 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 REPIN1-202 - 567 2.2e-62 204.9 93.7 9 18 1.9e-09 1.5e-06 28.4 3.5 2 26 279 303 278 303 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 REPIN1-202 - 567 2.2e-62 204.9 93.7 10 18 8 6e+03 -2.0 0.2 1 10 306 315 306 318 0.85 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 REPIN1-202 - 567 2.2e-62 204.9 93.7 11 18 0.095 71 4.1 0.1 11 24 371 384 362 385 0.81 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 REPIN1-202 - 567 2.2e-62 204.9 93.7 12 18 4.4e-10 3.3e-07 30.4 0.3 2 25 390 413 390 414 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 REPIN1-202 - 567 2.2e-62 204.9 93.7 13 18 5.6e-09 4.2e-06 26.9 0.3 1 25 417 441 417 442 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 REPIN1-202 - 567 2.2e-62 204.9 93.7 14 18 7.8e-08 5.8e-05 23.3 1.1 1 26 445 470 445 470 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 REPIN1-202 - 567 2.2e-62 204.9 93.7 15 18 1.8e-11 1.3e-08 34.8 0.1 2 25 474 497 473 498 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 REPIN1-202 - 567 2.2e-62 204.9 93.7 16 18 3.6e-11 2.7e-08 33.9 0.1 1 25 501 525 501 526 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 REPIN1-202 - 567 2.2e-62 204.9 93.7 17 18 0.0011 0.82 10.2 0.1 1 24 529 552 529 553 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 REPIN1-202 - 567 2.2e-62 204.9 93.7 18 18 10 7.4e+03 -2.3 0.1 4 9 560 565 558 567 0.79 Zinc-finger double domain zf-C2H2_4 PF13894.6 24 REPIN1-202 - 567 5.8e-43 141.8 107.1 1 15 0.3 2.3e+02 3.1 3.1 1 21 57 77 57 79 0.85 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 REPIN1-202 - 567 5.8e-43 141.8 107.1 2 15 0.003 2.3 9.3 0.4 2 23 86 107 85 108 0.80 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 REPIN1-202 - 567 5.8e-43 141.8 107.1 3 15 2.9e-05 0.021 15.6 0.4 1 23 116 138 116 139 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 REPIN1-202 - 567 5.8e-43 141.8 107.1 4 15 1.4e-05 0.01 16.6 2.5 2 24 146 168 145 168 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 REPIN1-202 - 567 5.8e-43 141.8 107.1 5 15 5.3e-05 0.04 14.8 0.1 1 23 177 199 177 200 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 REPIN1-202 - 567 5.8e-43 141.8 107.1 6 15 0.002 1.5 9.9 3.3 1 23 236 258 236 259 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 REPIN1-202 - 567 5.8e-43 141.8 107.1 7 15 1.2e-05 0.0092 16.7 1.5 1 23 264 286 264 287 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 REPIN1-202 - 567 5.8e-43 141.8 107.1 8 15 8.6e-05 0.064 14.1 2.1 1 23 292 314 292 315 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 REPIN1-202 - 567 5.8e-43 141.8 107.1 9 15 9.3e-05 0.069 14.0 0.7 1 23 375 397 375 398 0.85 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 REPIN1-202 - 567 5.8e-43 141.8 107.1 10 15 0.00046 0.35 11.8 1.0 1 23 403 425 403 426 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 REPIN1-202 - 567 5.8e-43 141.8 107.1 11 15 3.5e-05 0.026 15.3 0.4 1 23 431 453 431 454 0.91 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 REPIN1-202 - 567 5.8e-43 141.8 107.1 12 15 0.00023 0.17 12.8 0.5 1 23 459 481 459 482 0.87 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 REPIN1-202 - 567 5.8e-43 141.8 107.1 13 15 5.1e-06 0.0038 17.9 0.3 1 23 487 509 487 510 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 REPIN1-202 - 567 5.8e-43 141.8 107.1 14 15 1e-06 0.00076 20.1 0.4 1 23 515 537 515 538 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 REPIN1-202 - 567 5.8e-43 141.8 107.1 15 15 3.1e-06 0.0023 18.6 0.5 1 23 543 565 543 566 0.97 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 REPIN1-202 - 567 4.1e-15 55.3 84.0 1 15 0.97 7.3e+02 0.3 0.5 1 17 56 72 56 79 0.77 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 REPIN1-202 - 567 4.1e-15 55.3 84.0 2 15 0.037 27 4.9 0.1 4 12 87 95 86 96 0.91 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 REPIN1-202 - 567 4.1e-15 55.3 84.0 3 15 0.0028 2.1 8.5 0.2 2 25 116 139 116 141 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 REPIN1-202 - 567 4.1e-15 55.3 84.0 4 15 0.0022 1.6 8.8 0.3 4 25 147 169 146 171 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 REPIN1-202 - 567 4.1e-15 55.3 84.0 5 15 0.014 11 6.2 0.0 2 24 177 199 177 202 0.92 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 REPIN1-202 - 567 4.1e-15 55.3 84.0 6 15 0.0078 5.8 7.0 1.6 2 24 236 258 236 261 0.92 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 REPIN1-202 - 567 4.1e-15 55.3 84.0 7 15 0.0015 1.1 9.4 0.4 2 12 264 274 264 287 0.85 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 REPIN1-202 - 567 4.1e-15 55.3 84.0 8 15 0.0015 1.1 9.3 1.7 2 25 292 315 292 317 0.85 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 REPIN1-202 - 567 4.1e-15 55.3 84.0 9 15 0.0035 2.6 8.1 0.3 2 24 375 397 374 400 0.92 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 REPIN1-202 - 567 4.1e-15 55.3 84.0 10 15 0.012 9.1 6.4 1.4 2 24 403 425 403 428 0.87 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 REPIN1-202 - 567 4.1e-15 55.3 84.0 11 15 0.00088 0.66 10.0 0.3 2 24 431 453 431 455 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 REPIN1-202 - 567 4.1e-15 55.3 84.0 12 15 0.2 1.5e+02 2.6 0.3 2 12 459 469 459 472 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 REPIN1-202 - 567 4.1e-15 55.3 84.0 13 15 0.01 7.8 6.6 0.1 2 24 487 509 487 512 0.89 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 REPIN1-202 - 567 4.1e-15 55.3 84.0 14 15 3.4e-05 0.025 14.6 0.1 2 24 515 537 515 539 0.96 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 REPIN1-202 - 567 4.1e-15 55.3 84.0 15 15 0.025 19 5.4 0.8 1 12 542 553 542 565 0.76 C2H2-type zinc finger Zn-ribbon_8 PF09723.10 40 REPIN1-202 - 567 1.4e-13 50.7 61.1 1 11 0.0055 4.1 7.6 1.8 7 36 58 94 56 97 0.77 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 REPIN1-202 - 567 1.4e-13 50.7 61.1 2 11 0.00011 0.078 13.1 0.1 6 34 116 152 115 157 0.77 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 REPIN1-202 - 567 1.4e-13 50.7 61.1 3 11 0.12 88 3.3 0.0 6 18 177 189 176 197 0.83 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 REPIN1-202 - 567 1.4e-13 50.7 61.1 4 11 0.00025 0.19 11.9 4.7 6 35 236 272 235 276 0.86 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 REPIN1-202 - 567 1.4e-13 50.7 61.1 5 11 0.019 14 5.9 0.1 6 16 292 302 281 320 0.80 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 REPIN1-202 - 567 1.4e-13 50.7 61.1 6 11 0.00093 0.69 10.1 2.6 6 36 375 412 374 416 0.78 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 REPIN1-202 - 567 1.4e-13 50.7 61.1 7 11 1.4e-05 0.01 15.9 2.0 6 37 431 469 430 472 0.79 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 REPIN1-202 - 567 1.4e-13 50.7 61.1 8 11 1e-05 0.0076 16.3 1.4 6 35 459 495 458 499 0.88 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 REPIN1-202 - 567 1.4e-13 50.7 61.1 9 11 5.9e-05 0.044 13.9 1.4 6 34 487 522 486 528 0.84 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 REPIN1-202 - 567 1.4e-13 50.7 61.1 10 11 0.18 1.3e+02 2.7 4.5 6 34 515 550 514 553 0.73 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 REPIN1-202 - 567 1.4e-13 50.7 61.1 11 11 0.38 2.9e+02 1.7 1.0 6 16 543 553 542 566 0.76 Zinc ribbon domain zf_UBZ PF18439.1 32 REPIN1-202 - 567 8.3e-13 47.7 51.4 1 15 0.22 1.7e+02 1.9 0.0 4 15 58 69 56 72 0.86 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 REPIN1-202 - 567 8.3e-13 47.7 51.4 2 15 0.05 38 4.0 0.1 4 12 86 94 84 99 0.86 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 REPIN1-202 - 567 8.3e-13 47.7 51.4 3 15 2.1 1.6e+03 -1.2 0.0 3 12 116 125 115 131 0.82 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 REPIN1-202 - 567 8.3e-13 47.7 51.4 4 15 0.16 1.2e+02 2.4 0.1 4 18 146 161 144 164 0.75 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 REPIN1-202 - 567 8.3e-13 47.7 51.4 5 15 0.002 1.5 8.5 0.1 3 30 177 205 175 207 0.87 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 REPIN1-202 - 567 8.3e-13 47.7 51.4 6 15 0.48 3.6e+02 0.9 0.6 3 12 236 245 235 254 0.86 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 REPIN1-202 - 567 8.3e-13 47.7 51.4 7 15 0.011 8.4 6.1 0.2 4 13 265 274 263 283 0.81 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 REPIN1-202 - 567 8.3e-13 47.7 51.4 8 15 0.0062 4.7 6.9 0.2 3 20 292 310 290 311 0.85 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 REPIN1-202 - 567 8.3e-13 47.7 51.4 9 15 0.014 11 5.8 0.0 2 13 374 385 373 394 0.82 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 REPIN1-202 - 567 8.3e-13 47.7 51.4 10 15 0.013 9.4 5.9 0.1 3 12 403 412 401 417 0.90 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 REPIN1-202 - 567 8.3e-13 47.7 51.4 11 15 0.0095 7.1 6.3 0.1 3 15 431 443 429 450 0.81 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 REPIN1-202 - 567 8.3e-13 47.7 51.4 12 15 0.011 7.9 6.2 0.0 3 12 459 468 457 477 0.88 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 REPIN1-202 - 567 8.3e-13 47.7 51.4 13 15 0.00098 0.74 9.5 0.1 3 20 487 505 485 506 0.79 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 REPIN1-202 - 567 8.3e-13 47.7 51.4 14 15 0.014 11 5.8 0.1 3 15 515 527 513 534 0.80 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 REPIN1-202 - 567 8.3e-13 47.7 51.4 15 15 0.032 24 4.7 0.2 3 17 543 557 541 562 0.80 Ubiquitin-Binding Zinc Finger FYDLN_acid PF09538.10 106 REPIN1-202 - 567 2.6e-07 31.3 35.4 1 12 0.023 17 6.1 0.0 24 52 82 110 80 114 0.81 Protein of unknown function (FYDLN_acid) FYDLN_acid PF09538.10 106 REPIN1-202 - 567 2.6e-07 31.3 35.4 2 12 0.0078 5.8 7.6 0.2 24 43 142 161 140 175 0.76 Protein of unknown function (FYDLN_acid) FYDLN_acid PF09538.10 106 REPIN1-202 - 567 2.6e-07 31.3 35.4 3 12 0.17 1.2e+02 3.4 0.0 25 52 175 203 172 217 0.62 Protein of unknown function (FYDLN_acid) FYDLN_acid PF09538.10 106 REPIN1-202 - 567 2.6e-07 31.3 35.4 4 12 1.4 1e+03 0.4 0.1 25 41 234 250 230 262 0.73 Protein of unknown function (FYDLN_acid) FYDLN_acid PF09538.10 106 REPIN1-202 - 567 2.6e-07 31.3 35.4 5 12 0.046 34 5.2 2.3 24 48 261 285 237 293 0.84 Protein of unknown function (FYDLN_acid) FYDLN_acid PF09538.10 106 REPIN1-202 - 567 2.6e-07 31.3 35.4 6 12 0.23 1.7e+02 2.9 1.7 12 43 266 280 264 329 0.61 Protein of unknown function (FYDLN_acid) FYDLN_acid PF09538.10 106 REPIN1-202 - 567 2.6e-07 31.3 35.4 7 12 3.8 2.8e+03 -1.0 0.0 29 48 377 396 375 401 0.75 Protein of unknown function (FYDLN_acid) FYDLN_acid PF09538.10 106 REPIN1-202 - 567 2.6e-07 31.3 35.4 8 12 0.29 2.2e+02 2.6 0.1 24 41 400 417 398 430 0.75 Protein of unknown function (FYDLN_acid) FYDLN_acid PF09538.10 106 REPIN1-202 - 567 2.6e-07 31.3 35.4 9 12 0.013 10 6.9 0.4 25 46 457 478 432 485 0.82 Protein of unknown function (FYDLN_acid) FYDLN_acid PF09538.10 106 REPIN1-202 - 567 2.6e-07 31.3 35.4 10 12 0.01 7.5 7.3 0.1 24 45 484 505 481 513 0.77 Protein of unknown function (FYDLN_acid) FYDLN_acid PF09538.10 106 REPIN1-202 - 567 2.6e-07 31.3 35.4 11 12 0.12 88 3.9 0.1 24 42 512 530 510 543 0.76 Protein of unknown function (FYDLN_acid) FYDLN_acid PF09538.10 106 REPIN1-202 - 567 2.6e-07 31.3 35.4 12 12 4.9 3.6e+03 -1.3 0.0 28 42 544 558 543 566 0.71 Protein of unknown function (FYDLN_acid) # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/REPIN1-202.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/REPIN1-202.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/REPIN1-202.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/REPIN1-202.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/REPIN1-202.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:56:20 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-C2H2 PF00096.26 23 REPIN1-203 - 567 5.8e-70 228.1 107.2 1 15 0.00098 0.73 10.4 1.1 1 22 57 78 57 78 0.95 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 REPIN1-203 - 567 5.8e-70 228.1 107.2 2 15 3.2e-05 0.024 15.1 0.4 2 23 86 107 85 107 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 REPIN1-203 - 567 5.8e-70 228.1 107.2 3 15 3e-06 0.0022 18.3 0.1 1 23 116 138 116 138 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 REPIN1-203 - 567 5.8e-70 228.1 107.2 4 15 0.00013 0.096 13.2 2.7 3 23 147 168 145 168 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 REPIN1-203 - 567 5.8e-70 228.1 107.2 5 15 3.7e-08 2.8e-05 24.3 0.0 1 23 177 199 177 199 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 REPIN1-203 - 567 5.8e-70 228.1 107.2 6 15 3.7e-05 0.028 14.9 3.9 1 23 236 258 236 258 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 REPIN1-203 - 567 5.8e-70 228.1 107.2 7 15 7.3e-08 5.4e-05 23.4 2.6 1 23 264 286 264 286 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 REPIN1-203 - 567 5.8e-70 228.1 107.2 8 15 1.7e-06 0.0013 19.1 2.4 1 23 292 314 292 314 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 REPIN1-203 - 567 5.8e-70 228.1 107.2 9 15 1.8e-06 0.0014 19.0 1.1 1 23 375 397 375 397 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 REPIN1-203 - 567 5.8e-70 228.1 107.2 10 15 2.9e-06 0.0022 18.4 0.9 1 23 403 425 403 425 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 REPIN1-203 - 567 5.8e-70 228.1 107.2 11 15 9.8e-07 0.00073 19.9 0.6 1 23 431 453 431 453 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 REPIN1-203 - 567 5.8e-70 228.1 107.2 12 15 2e-08 1.5e-05 25.2 0.5 1 23 459 481 459 481 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 REPIN1-203 - 567 5.8e-70 228.1 107.2 13 15 9.4e-11 7e-08 32.5 0.3 1 23 487 509 487 509 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 REPIN1-203 - 567 5.8e-70 228.1 107.2 14 15 2.2e-09 1.6e-06 28.2 0.9 1 23 515 537 515 537 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 REPIN1-203 - 567 5.8e-70 228.1 107.2 15 15 4.9e-05 0.037 14.5 0.6 1 23 543 565 543 565 0.96 Zinc finger, C2H2 type zf-H2C2_2 PF13465.6 26 REPIN1-203 - 567 2.2e-62 204.9 93.7 1 18 3.9 2.9e+03 -1.0 0.5 15 24 57 66 53 67 0.77 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 REPIN1-203 - 567 2.2e-62 204.9 93.7 2 18 0.091 68 4.1 3.6 14 26 84 96 60 96 0.70 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 REPIN1-203 - 567 2.2e-62 204.9 93.7 3 18 0.061 46 4.7 0.0 5 24 103 125 100 126 0.82 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 REPIN1-203 - 567 2.2e-62 204.9 93.7 4 18 0.00021 0.16 12.5 0.1 1 25 130 155 130 156 0.88 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 REPIN1-203 - 567 2.2e-62 204.9 93.7 5 18 0.0049 3.7 8.2 0.2 2 25 160 187 159 188 0.88 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 REPIN1-203 - 567 2.2e-62 204.9 93.7 6 18 3.8 2.8e+03 -1.0 0.1 2 9 192 199 191 202 0.89 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 REPIN1-203 - 567 2.2e-62 204.9 93.7 7 18 0.068 51 4.5 0.8 12 26 233 247 231 247 0.89 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 REPIN1-203 - 567 2.2e-62 204.9 93.7 8 18 3.8e-12 2.8e-09 37.0 0.7 1 26 250 275 250 275 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 REPIN1-203 - 567 2.2e-62 204.9 93.7 9 18 1.9e-09 1.5e-06 28.4 3.5 2 26 279 303 278 303 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 REPIN1-203 - 567 2.2e-62 204.9 93.7 10 18 8 6e+03 -2.0 0.2 1 10 306 315 306 318 0.85 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 REPIN1-203 - 567 2.2e-62 204.9 93.7 11 18 0.095 71 4.1 0.1 11 24 371 384 362 385 0.81 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 REPIN1-203 - 567 2.2e-62 204.9 93.7 12 18 4.4e-10 3.3e-07 30.4 0.3 2 25 390 413 390 414 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 REPIN1-203 - 567 2.2e-62 204.9 93.7 13 18 5.6e-09 4.2e-06 26.9 0.3 1 25 417 441 417 442 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 REPIN1-203 - 567 2.2e-62 204.9 93.7 14 18 7.8e-08 5.8e-05 23.3 1.1 1 26 445 470 445 470 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 REPIN1-203 - 567 2.2e-62 204.9 93.7 15 18 1.8e-11 1.3e-08 34.8 0.1 2 25 474 497 473 498 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 REPIN1-203 - 567 2.2e-62 204.9 93.7 16 18 3.6e-11 2.7e-08 33.9 0.1 1 25 501 525 501 526 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 REPIN1-203 - 567 2.2e-62 204.9 93.7 17 18 0.0011 0.82 10.2 0.1 1 24 529 552 529 553 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 REPIN1-203 - 567 2.2e-62 204.9 93.7 18 18 10 7.4e+03 -2.3 0.1 4 9 560 565 558 567 0.79 Zinc-finger double domain zf-C2H2_4 PF13894.6 24 REPIN1-203 - 567 5.8e-43 141.8 107.1 1 15 0.3 2.3e+02 3.1 3.1 1 21 57 77 57 79 0.85 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 REPIN1-203 - 567 5.8e-43 141.8 107.1 2 15 0.003 2.3 9.3 0.4 2 23 86 107 85 108 0.80 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 REPIN1-203 - 567 5.8e-43 141.8 107.1 3 15 2.9e-05 0.021 15.6 0.4 1 23 116 138 116 139 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 REPIN1-203 - 567 5.8e-43 141.8 107.1 4 15 1.4e-05 0.01 16.6 2.5 2 24 146 168 145 168 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 REPIN1-203 - 567 5.8e-43 141.8 107.1 5 15 5.3e-05 0.04 14.8 0.1 1 23 177 199 177 200 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 REPIN1-203 - 567 5.8e-43 141.8 107.1 6 15 0.002 1.5 9.9 3.3 1 23 236 258 236 259 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 REPIN1-203 - 567 5.8e-43 141.8 107.1 7 15 1.2e-05 0.0092 16.7 1.5 1 23 264 286 264 287 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 REPIN1-203 - 567 5.8e-43 141.8 107.1 8 15 8.6e-05 0.064 14.1 2.1 1 23 292 314 292 315 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 REPIN1-203 - 567 5.8e-43 141.8 107.1 9 15 9.3e-05 0.069 14.0 0.7 1 23 375 397 375 398 0.85 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 REPIN1-203 - 567 5.8e-43 141.8 107.1 10 15 0.00046 0.35 11.8 1.0 1 23 403 425 403 426 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 REPIN1-203 - 567 5.8e-43 141.8 107.1 11 15 3.5e-05 0.026 15.3 0.4 1 23 431 453 431 454 0.91 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 REPIN1-203 - 567 5.8e-43 141.8 107.1 12 15 0.00023 0.17 12.8 0.5 1 23 459 481 459 482 0.87 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 REPIN1-203 - 567 5.8e-43 141.8 107.1 13 15 5.1e-06 0.0038 17.9 0.3 1 23 487 509 487 510 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 REPIN1-203 - 567 5.8e-43 141.8 107.1 14 15 1e-06 0.00076 20.1 0.4 1 23 515 537 515 538 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 REPIN1-203 - 567 5.8e-43 141.8 107.1 15 15 3.1e-06 0.0023 18.6 0.5 1 23 543 565 543 566 0.97 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 REPIN1-203 - 567 4.1e-15 55.3 84.0 1 15 0.97 7.3e+02 0.3 0.5 1 17 56 72 56 79 0.77 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 REPIN1-203 - 567 4.1e-15 55.3 84.0 2 15 0.037 27 4.9 0.1 4 12 87 95 86 96 0.91 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 REPIN1-203 - 567 4.1e-15 55.3 84.0 3 15 0.0028 2.1 8.5 0.2 2 25 116 139 116 141 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 REPIN1-203 - 567 4.1e-15 55.3 84.0 4 15 0.0022 1.6 8.8 0.3 4 25 147 169 146 171 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 REPIN1-203 - 567 4.1e-15 55.3 84.0 5 15 0.014 11 6.2 0.0 2 24 177 199 177 202 0.92 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 REPIN1-203 - 567 4.1e-15 55.3 84.0 6 15 0.0078 5.8 7.0 1.6 2 24 236 258 236 261 0.92 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 REPIN1-203 - 567 4.1e-15 55.3 84.0 7 15 0.0015 1.1 9.4 0.4 2 12 264 274 264 287 0.85 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 REPIN1-203 - 567 4.1e-15 55.3 84.0 8 15 0.0015 1.1 9.3 1.7 2 25 292 315 292 317 0.85 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 REPIN1-203 - 567 4.1e-15 55.3 84.0 9 15 0.0035 2.6 8.1 0.3 2 24 375 397 374 400 0.92 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 REPIN1-203 - 567 4.1e-15 55.3 84.0 10 15 0.012 9.1 6.4 1.4 2 24 403 425 403 428 0.87 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 REPIN1-203 - 567 4.1e-15 55.3 84.0 11 15 0.00088 0.66 10.0 0.3 2 24 431 453 431 455 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 REPIN1-203 - 567 4.1e-15 55.3 84.0 12 15 0.2 1.5e+02 2.6 0.3 2 12 459 469 459 472 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 REPIN1-203 - 567 4.1e-15 55.3 84.0 13 15 0.01 7.8 6.6 0.1 2 24 487 509 487 512 0.89 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 REPIN1-203 - 567 4.1e-15 55.3 84.0 14 15 3.4e-05 0.025 14.6 0.1 2 24 515 537 515 539 0.96 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 REPIN1-203 - 567 4.1e-15 55.3 84.0 15 15 0.025 19 5.4 0.8 1 12 542 553 542 565 0.76 C2H2-type zinc finger Zn-ribbon_8 PF09723.10 40 REPIN1-203 - 567 1.4e-13 50.7 61.1 1 11 0.0055 4.1 7.6 1.8 7 36 58 94 56 97 0.77 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 REPIN1-203 - 567 1.4e-13 50.7 61.1 2 11 0.00011 0.078 13.1 0.1 6 34 116 152 115 157 0.77 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 REPIN1-203 - 567 1.4e-13 50.7 61.1 3 11 0.12 88 3.3 0.0 6 18 177 189 176 197 0.83 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 REPIN1-203 - 567 1.4e-13 50.7 61.1 4 11 0.00025 0.19 11.9 4.7 6 35 236 272 235 276 0.86 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 REPIN1-203 - 567 1.4e-13 50.7 61.1 5 11 0.019 14 5.9 0.1 6 16 292 302 281 320 0.80 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 REPIN1-203 - 567 1.4e-13 50.7 61.1 6 11 0.00093 0.69 10.1 2.6 6 36 375 412 374 416 0.78 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 REPIN1-203 - 567 1.4e-13 50.7 61.1 7 11 1.4e-05 0.01 15.9 2.0 6 37 431 469 430 472 0.79 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 REPIN1-203 - 567 1.4e-13 50.7 61.1 8 11 1e-05 0.0076 16.3 1.4 6 35 459 495 458 499 0.88 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 REPIN1-203 - 567 1.4e-13 50.7 61.1 9 11 5.9e-05 0.044 13.9 1.4 6 34 487 522 486 528 0.84 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 REPIN1-203 - 567 1.4e-13 50.7 61.1 10 11 0.18 1.3e+02 2.7 4.5 6 34 515 550 514 553 0.73 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 REPIN1-203 - 567 1.4e-13 50.7 61.1 11 11 0.38 2.9e+02 1.7 1.0 6 16 543 553 542 566 0.76 Zinc ribbon domain zf_UBZ PF18439.1 32 REPIN1-203 - 567 8.3e-13 47.7 51.4 1 15 0.22 1.7e+02 1.9 0.0 4 15 58 69 56 72 0.86 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 REPIN1-203 - 567 8.3e-13 47.7 51.4 2 15 0.05 38 4.0 0.1 4 12 86 94 84 99 0.86 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 REPIN1-203 - 567 8.3e-13 47.7 51.4 3 15 2.1 1.6e+03 -1.2 0.0 3 12 116 125 115 131 0.82 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 REPIN1-203 - 567 8.3e-13 47.7 51.4 4 15 0.16 1.2e+02 2.4 0.1 4 18 146 161 144 164 0.75 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 REPIN1-203 - 567 8.3e-13 47.7 51.4 5 15 0.002 1.5 8.5 0.1 3 30 177 205 175 207 0.87 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 REPIN1-203 - 567 8.3e-13 47.7 51.4 6 15 0.48 3.6e+02 0.9 0.6 3 12 236 245 235 254 0.86 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 REPIN1-203 - 567 8.3e-13 47.7 51.4 7 15 0.011 8.4 6.1 0.2 4 13 265 274 263 283 0.81 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 REPIN1-203 - 567 8.3e-13 47.7 51.4 8 15 0.0062 4.7 6.9 0.2 3 20 292 310 290 311 0.85 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 REPIN1-203 - 567 8.3e-13 47.7 51.4 9 15 0.014 11 5.8 0.0 2 13 374 385 373 394 0.82 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 REPIN1-203 - 567 8.3e-13 47.7 51.4 10 15 0.013 9.4 5.9 0.1 3 12 403 412 401 417 0.90 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 REPIN1-203 - 567 8.3e-13 47.7 51.4 11 15 0.0095 7.1 6.3 0.1 3 15 431 443 429 450 0.81 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 REPIN1-203 - 567 8.3e-13 47.7 51.4 12 15 0.011 7.9 6.2 0.0 3 12 459 468 457 477 0.88 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 REPIN1-203 - 567 8.3e-13 47.7 51.4 13 15 0.00098 0.74 9.5 0.1 3 20 487 505 485 506 0.79 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 REPIN1-203 - 567 8.3e-13 47.7 51.4 14 15 0.014 11 5.8 0.1 3 15 515 527 513 534 0.80 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 REPIN1-203 - 567 8.3e-13 47.7 51.4 15 15 0.032 24 4.7 0.2 3 17 543 557 541 562 0.80 Ubiquitin-Binding Zinc Finger FYDLN_acid PF09538.10 106 REPIN1-203 - 567 2.6e-07 31.3 35.4 1 12 0.023 17 6.1 0.0 24 52 82 110 80 114 0.81 Protein of unknown function (FYDLN_acid) FYDLN_acid PF09538.10 106 REPIN1-203 - 567 2.6e-07 31.3 35.4 2 12 0.0078 5.8 7.6 0.2 24 43 142 161 140 175 0.76 Protein of unknown function (FYDLN_acid) FYDLN_acid PF09538.10 106 REPIN1-203 - 567 2.6e-07 31.3 35.4 3 12 0.17 1.2e+02 3.4 0.0 25 52 175 203 172 217 0.62 Protein of unknown function (FYDLN_acid) FYDLN_acid PF09538.10 106 REPIN1-203 - 567 2.6e-07 31.3 35.4 4 12 1.4 1e+03 0.4 0.1 25 41 234 250 230 262 0.73 Protein of unknown function (FYDLN_acid) FYDLN_acid PF09538.10 106 REPIN1-203 - 567 2.6e-07 31.3 35.4 5 12 0.046 34 5.2 2.3 24 48 261 285 237 293 0.84 Protein of unknown function (FYDLN_acid) FYDLN_acid PF09538.10 106 REPIN1-203 - 567 2.6e-07 31.3 35.4 6 12 0.23 1.7e+02 2.9 1.7 12 43 266 280 264 329 0.61 Protein of unknown function (FYDLN_acid) FYDLN_acid PF09538.10 106 REPIN1-203 - 567 2.6e-07 31.3 35.4 7 12 3.8 2.8e+03 -1.0 0.0 29 48 377 396 375 401 0.75 Protein of unknown function (FYDLN_acid) FYDLN_acid PF09538.10 106 REPIN1-203 - 567 2.6e-07 31.3 35.4 8 12 0.29 2.2e+02 2.6 0.1 24 41 400 417 398 430 0.75 Protein of unknown function (FYDLN_acid) FYDLN_acid PF09538.10 106 REPIN1-203 - 567 2.6e-07 31.3 35.4 9 12 0.013 10 6.9 0.4 25 46 457 478 432 485 0.82 Protein of unknown function (FYDLN_acid) FYDLN_acid PF09538.10 106 REPIN1-203 - 567 2.6e-07 31.3 35.4 10 12 0.01 7.5 7.3 0.1 24 45 484 505 481 513 0.77 Protein of unknown function (FYDLN_acid) FYDLN_acid PF09538.10 106 REPIN1-203 - 567 2.6e-07 31.3 35.4 11 12 0.12 88 3.9 0.1 24 42 512 530 510 543 0.76 Protein of unknown function (FYDLN_acid) FYDLN_acid PF09538.10 106 REPIN1-203 - 567 2.6e-07 31.3 35.4 12 12 4.9 3.6e+03 -1.3 0.0 28 42 544 558 543 566 0.71 Protein of unknown function (FYDLN_acid) # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/REPIN1-203.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/REPIN1-203.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/REPIN1-203.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/REPIN1-203.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/REPIN1-203.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:56:20 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/REPIN1-204.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/REPIN1-204.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/REPIN1-204.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/REPIN1-204.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/REPIN1-204.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:56:20 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/REPIN1-205.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/REPIN1-205.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/REPIN1-205.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/REPIN1-205.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/REPIN1-205.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:56:21 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/REPIN1-206.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/REPIN1-206.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/REPIN1-206.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/REPIN1-206.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/REPIN1-206.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:56:21 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/REPIN1-207.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/REPIN1-207.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/REPIN1-207.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/REPIN1-207.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/REPIN1-207.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:56:21 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/REPIN1-208.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/REPIN1-208.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/REPIN1-208.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/REPIN1-208.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/REPIN1-208.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:56:22 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-C2H2 PF00096.26 23 REPIN1-209 - 567 5.8e-70 228.1 107.2 1 15 0.00098 0.73 10.4 1.1 1 22 57 78 57 78 0.95 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 REPIN1-209 - 567 5.8e-70 228.1 107.2 2 15 3.2e-05 0.024 15.1 0.4 2 23 86 107 85 107 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 REPIN1-209 - 567 5.8e-70 228.1 107.2 3 15 3e-06 0.0022 18.3 0.1 1 23 116 138 116 138 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 REPIN1-209 - 567 5.8e-70 228.1 107.2 4 15 0.00013 0.096 13.2 2.7 3 23 147 168 145 168 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 REPIN1-209 - 567 5.8e-70 228.1 107.2 5 15 3.7e-08 2.8e-05 24.3 0.0 1 23 177 199 177 199 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 REPIN1-209 - 567 5.8e-70 228.1 107.2 6 15 3.7e-05 0.028 14.9 3.9 1 23 236 258 236 258 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 REPIN1-209 - 567 5.8e-70 228.1 107.2 7 15 7.3e-08 5.4e-05 23.4 2.6 1 23 264 286 264 286 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 REPIN1-209 - 567 5.8e-70 228.1 107.2 8 15 1.7e-06 0.0013 19.1 2.4 1 23 292 314 292 314 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 REPIN1-209 - 567 5.8e-70 228.1 107.2 9 15 1.8e-06 0.0014 19.0 1.1 1 23 375 397 375 397 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 REPIN1-209 - 567 5.8e-70 228.1 107.2 10 15 2.9e-06 0.0022 18.4 0.9 1 23 403 425 403 425 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 REPIN1-209 - 567 5.8e-70 228.1 107.2 11 15 9.8e-07 0.00073 19.9 0.6 1 23 431 453 431 453 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 REPIN1-209 - 567 5.8e-70 228.1 107.2 12 15 2e-08 1.5e-05 25.2 0.5 1 23 459 481 459 481 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 REPIN1-209 - 567 5.8e-70 228.1 107.2 13 15 9.4e-11 7e-08 32.5 0.3 1 23 487 509 487 509 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 REPIN1-209 - 567 5.8e-70 228.1 107.2 14 15 2.2e-09 1.6e-06 28.2 0.9 1 23 515 537 515 537 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 REPIN1-209 - 567 5.8e-70 228.1 107.2 15 15 4.9e-05 0.037 14.5 0.6 1 23 543 565 543 565 0.96 Zinc finger, C2H2 type zf-H2C2_2 PF13465.6 26 REPIN1-209 - 567 2.2e-62 204.9 93.7 1 18 3.9 2.9e+03 -1.0 0.5 15 24 57 66 53 67 0.77 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 REPIN1-209 - 567 2.2e-62 204.9 93.7 2 18 0.091 68 4.1 3.6 14 26 84 96 60 96 0.70 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 REPIN1-209 - 567 2.2e-62 204.9 93.7 3 18 0.061 46 4.7 0.0 5 24 103 125 100 126 0.82 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 REPIN1-209 - 567 2.2e-62 204.9 93.7 4 18 0.00021 0.16 12.5 0.1 1 25 130 155 130 156 0.88 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 REPIN1-209 - 567 2.2e-62 204.9 93.7 5 18 0.0049 3.7 8.2 0.2 2 25 160 187 159 188 0.88 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 REPIN1-209 - 567 2.2e-62 204.9 93.7 6 18 3.8 2.8e+03 -1.0 0.1 2 9 192 199 191 202 0.89 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 REPIN1-209 - 567 2.2e-62 204.9 93.7 7 18 0.068 51 4.5 0.8 12 26 233 247 231 247 0.89 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 REPIN1-209 - 567 2.2e-62 204.9 93.7 8 18 3.8e-12 2.8e-09 37.0 0.7 1 26 250 275 250 275 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 REPIN1-209 - 567 2.2e-62 204.9 93.7 9 18 1.9e-09 1.5e-06 28.4 3.5 2 26 279 303 278 303 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 REPIN1-209 - 567 2.2e-62 204.9 93.7 10 18 8 6e+03 -2.0 0.2 1 10 306 315 306 318 0.85 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 REPIN1-209 - 567 2.2e-62 204.9 93.7 11 18 0.095 71 4.1 0.1 11 24 371 384 362 385 0.81 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 REPIN1-209 - 567 2.2e-62 204.9 93.7 12 18 4.4e-10 3.3e-07 30.4 0.3 2 25 390 413 390 414 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 REPIN1-209 - 567 2.2e-62 204.9 93.7 13 18 5.6e-09 4.2e-06 26.9 0.3 1 25 417 441 417 442 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 REPIN1-209 - 567 2.2e-62 204.9 93.7 14 18 7.8e-08 5.8e-05 23.3 1.1 1 26 445 470 445 470 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 REPIN1-209 - 567 2.2e-62 204.9 93.7 15 18 1.8e-11 1.3e-08 34.8 0.1 2 25 474 497 473 498 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 REPIN1-209 - 567 2.2e-62 204.9 93.7 16 18 3.6e-11 2.7e-08 33.9 0.1 1 25 501 525 501 526 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 REPIN1-209 - 567 2.2e-62 204.9 93.7 17 18 0.0011 0.82 10.2 0.1 1 24 529 552 529 553 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 REPIN1-209 - 567 2.2e-62 204.9 93.7 18 18 10 7.4e+03 -2.3 0.1 4 9 560 565 558 567 0.79 Zinc-finger double domain zf-C2H2_4 PF13894.6 24 REPIN1-209 - 567 5.8e-43 141.8 107.1 1 15 0.3 2.3e+02 3.1 3.1 1 21 57 77 57 79 0.85 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 REPIN1-209 - 567 5.8e-43 141.8 107.1 2 15 0.003 2.3 9.3 0.4 2 23 86 107 85 108 0.80 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 REPIN1-209 - 567 5.8e-43 141.8 107.1 3 15 2.9e-05 0.021 15.6 0.4 1 23 116 138 116 139 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 REPIN1-209 - 567 5.8e-43 141.8 107.1 4 15 1.4e-05 0.01 16.6 2.5 2 24 146 168 145 168 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 REPIN1-209 - 567 5.8e-43 141.8 107.1 5 15 5.3e-05 0.04 14.8 0.1 1 23 177 199 177 200 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 REPIN1-209 - 567 5.8e-43 141.8 107.1 6 15 0.002 1.5 9.9 3.3 1 23 236 258 236 259 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 REPIN1-209 - 567 5.8e-43 141.8 107.1 7 15 1.2e-05 0.0092 16.7 1.5 1 23 264 286 264 287 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 REPIN1-209 - 567 5.8e-43 141.8 107.1 8 15 8.6e-05 0.064 14.1 2.1 1 23 292 314 292 315 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 REPIN1-209 - 567 5.8e-43 141.8 107.1 9 15 9.3e-05 0.069 14.0 0.7 1 23 375 397 375 398 0.85 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 REPIN1-209 - 567 5.8e-43 141.8 107.1 10 15 0.00046 0.35 11.8 1.0 1 23 403 425 403 426 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 REPIN1-209 - 567 5.8e-43 141.8 107.1 11 15 3.5e-05 0.026 15.3 0.4 1 23 431 453 431 454 0.91 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 REPIN1-209 - 567 5.8e-43 141.8 107.1 12 15 0.00023 0.17 12.8 0.5 1 23 459 481 459 482 0.87 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 REPIN1-209 - 567 5.8e-43 141.8 107.1 13 15 5.1e-06 0.0038 17.9 0.3 1 23 487 509 487 510 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 REPIN1-209 - 567 5.8e-43 141.8 107.1 14 15 1e-06 0.00076 20.1 0.4 1 23 515 537 515 538 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 REPIN1-209 - 567 5.8e-43 141.8 107.1 15 15 3.1e-06 0.0023 18.6 0.5 1 23 543 565 543 566 0.97 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 REPIN1-209 - 567 4.1e-15 55.3 84.0 1 15 0.97 7.3e+02 0.3 0.5 1 17 56 72 56 79 0.77 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 REPIN1-209 - 567 4.1e-15 55.3 84.0 2 15 0.037 27 4.9 0.1 4 12 87 95 86 96 0.91 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 REPIN1-209 - 567 4.1e-15 55.3 84.0 3 15 0.0028 2.1 8.5 0.2 2 25 116 139 116 141 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 REPIN1-209 - 567 4.1e-15 55.3 84.0 4 15 0.0022 1.6 8.8 0.3 4 25 147 169 146 171 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 REPIN1-209 - 567 4.1e-15 55.3 84.0 5 15 0.014 11 6.2 0.0 2 24 177 199 177 202 0.92 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 REPIN1-209 - 567 4.1e-15 55.3 84.0 6 15 0.0078 5.8 7.0 1.6 2 24 236 258 236 261 0.92 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 REPIN1-209 - 567 4.1e-15 55.3 84.0 7 15 0.0015 1.1 9.4 0.4 2 12 264 274 264 287 0.85 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 REPIN1-209 - 567 4.1e-15 55.3 84.0 8 15 0.0015 1.1 9.3 1.7 2 25 292 315 292 317 0.85 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 REPIN1-209 - 567 4.1e-15 55.3 84.0 9 15 0.0035 2.6 8.1 0.3 2 24 375 397 374 400 0.92 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 REPIN1-209 - 567 4.1e-15 55.3 84.0 10 15 0.012 9.1 6.4 1.4 2 24 403 425 403 428 0.87 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 REPIN1-209 - 567 4.1e-15 55.3 84.0 11 15 0.00088 0.66 10.0 0.3 2 24 431 453 431 455 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 REPIN1-209 - 567 4.1e-15 55.3 84.0 12 15 0.2 1.5e+02 2.6 0.3 2 12 459 469 459 472 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 REPIN1-209 - 567 4.1e-15 55.3 84.0 13 15 0.01 7.8 6.6 0.1 2 24 487 509 487 512 0.89 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 REPIN1-209 - 567 4.1e-15 55.3 84.0 14 15 3.4e-05 0.025 14.6 0.1 2 24 515 537 515 539 0.96 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 REPIN1-209 - 567 4.1e-15 55.3 84.0 15 15 0.025 19 5.4 0.8 1 12 542 553 542 565 0.76 C2H2-type zinc finger Zn-ribbon_8 PF09723.10 40 REPIN1-209 - 567 1.4e-13 50.7 61.1 1 11 0.0055 4.1 7.6 1.8 7 36 58 94 56 97 0.77 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 REPIN1-209 - 567 1.4e-13 50.7 61.1 2 11 0.00011 0.078 13.1 0.1 6 34 116 152 115 157 0.77 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 REPIN1-209 - 567 1.4e-13 50.7 61.1 3 11 0.12 88 3.3 0.0 6 18 177 189 176 197 0.83 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 REPIN1-209 - 567 1.4e-13 50.7 61.1 4 11 0.00025 0.19 11.9 4.7 6 35 236 272 235 276 0.86 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 REPIN1-209 - 567 1.4e-13 50.7 61.1 5 11 0.019 14 5.9 0.1 6 16 292 302 281 320 0.80 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 REPIN1-209 - 567 1.4e-13 50.7 61.1 6 11 0.00093 0.69 10.1 2.6 6 36 375 412 374 416 0.78 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 REPIN1-209 - 567 1.4e-13 50.7 61.1 7 11 1.4e-05 0.01 15.9 2.0 6 37 431 469 430 472 0.79 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 REPIN1-209 - 567 1.4e-13 50.7 61.1 8 11 1e-05 0.0076 16.3 1.4 6 35 459 495 458 499 0.88 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 REPIN1-209 - 567 1.4e-13 50.7 61.1 9 11 5.9e-05 0.044 13.9 1.4 6 34 487 522 486 528 0.84 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 REPIN1-209 - 567 1.4e-13 50.7 61.1 10 11 0.18 1.3e+02 2.7 4.5 6 34 515 550 514 553 0.73 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 REPIN1-209 - 567 1.4e-13 50.7 61.1 11 11 0.38 2.9e+02 1.7 1.0 6 16 543 553 542 566 0.76 Zinc ribbon domain zf_UBZ PF18439.1 32 REPIN1-209 - 567 8.3e-13 47.7 51.4 1 15 0.22 1.7e+02 1.9 0.0 4 15 58 69 56 72 0.86 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 REPIN1-209 - 567 8.3e-13 47.7 51.4 2 15 0.05 38 4.0 0.1 4 12 86 94 84 99 0.86 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 REPIN1-209 - 567 8.3e-13 47.7 51.4 3 15 2.1 1.6e+03 -1.2 0.0 3 12 116 125 115 131 0.82 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 REPIN1-209 - 567 8.3e-13 47.7 51.4 4 15 0.16 1.2e+02 2.4 0.1 4 18 146 161 144 164 0.75 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 REPIN1-209 - 567 8.3e-13 47.7 51.4 5 15 0.002 1.5 8.5 0.1 3 30 177 205 175 207 0.87 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 REPIN1-209 - 567 8.3e-13 47.7 51.4 6 15 0.48 3.6e+02 0.9 0.6 3 12 236 245 235 254 0.86 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 REPIN1-209 - 567 8.3e-13 47.7 51.4 7 15 0.011 8.4 6.1 0.2 4 13 265 274 263 283 0.81 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 REPIN1-209 - 567 8.3e-13 47.7 51.4 8 15 0.0062 4.7 6.9 0.2 3 20 292 310 290 311 0.85 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 REPIN1-209 - 567 8.3e-13 47.7 51.4 9 15 0.014 11 5.8 0.0 2 13 374 385 373 394 0.82 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 REPIN1-209 - 567 8.3e-13 47.7 51.4 10 15 0.013 9.4 5.9 0.1 3 12 403 412 401 417 0.90 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 REPIN1-209 - 567 8.3e-13 47.7 51.4 11 15 0.0095 7.1 6.3 0.1 3 15 431 443 429 450 0.81 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 REPIN1-209 - 567 8.3e-13 47.7 51.4 12 15 0.011 7.9 6.2 0.0 3 12 459 468 457 477 0.88 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 REPIN1-209 - 567 8.3e-13 47.7 51.4 13 15 0.00098 0.74 9.5 0.1 3 20 487 505 485 506 0.79 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 REPIN1-209 - 567 8.3e-13 47.7 51.4 14 15 0.014 11 5.8 0.1 3 15 515 527 513 534 0.80 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 REPIN1-209 - 567 8.3e-13 47.7 51.4 15 15 0.032 24 4.7 0.2 3 17 543 557 541 562 0.80 Ubiquitin-Binding Zinc Finger FYDLN_acid PF09538.10 106 REPIN1-209 - 567 2.6e-07 31.3 35.4 1 12 0.023 17 6.1 0.0 24 52 82 110 80 114 0.81 Protein of unknown function (FYDLN_acid) FYDLN_acid PF09538.10 106 REPIN1-209 - 567 2.6e-07 31.3 35.4 2 12 0.0078 5.8 7.6 0.2 24 43 142 161 140 175 0.76 Protein of unknown function (FYDLN_acid) FYDLN_acid PF09538.10 106 REPIN1-209 - 567 2.6e-07 31.3 35.4 3 12 0.17 1.2e+02 3.4 0.0 25 52 175 203 172 217 0.62 Protein of unknown function (FYDLN_acid) FYDLN_acid PF09538.10 106 REPIN1-209 - 567 2.6e-07 31.3 35.4 4 12 1.4 1e+03 0.4 0.1 25 41 234 250 230 262 0.73 Protein of unknown function (FYDLN_acid) FYDLN_acid PF09538.10 106 REPIN1-209 - 567 2.6e-07 31.3 35.4 5 12 0.046 34 5.2 2.3 24 48 261 285 237 293 0.84 Protein of unknown function (FYDLN_acid) FYDLN_acid PF09538.10 106 REPIN1-209 - 567 2.6e-07 31.3 35.4 6 12 0.23 1.7e+02 2.9 1.7 12 43 266 280 264 329 0.61 Protein of unknown function (FYDLN_acid) FYDLN_acid PF09538.10 106 REPIN1-209 - 567 2.6e-07 31.3 35.4 7 12 3.8 2.8e+03 -1.0 0.0 29 48 377 396 375 401 0.75 Protein of unknown function (FYDLN_acid) FYDLN_acid PF09538.10 106 REPIN1-209 - 567 2.6e-07 31.3 35.4 8 12 0.29 2.2e+02 2.6 0.1 24 41 400 417 398 430 0.75 Protein of unknown function (FYDLN_acid) FYDLN_acid PF09538.10 106 REPIN1-209 - 567 2.6e-07 31.3 35.4 9 12 0.013 10 6.9 0.4 25 46 457 478 432 485 0.82 Protein of unknown function (FYDLN_acid) FYDLN_acid PF09538.10 106 REPIN1-209 - 567 2.6e-07 31.3 35.4 10 12 0.01 7.5 7.3 0.1 24 45 484 505 481 513 0.77 Protein of unknown function (FYDLN_acid) FYDLN_acid PF09538.10 106 REPIN1-209 - 567 2.6e-07 31.3 35.4 11 12 0.12 88 3.9 0.1 24 42 512 530 510 543 0.76 Protein of unknown function (FYDLN_acid) FYDLN_acid PF09538.10 106 REPIN1-209 - 567 2.6e-07 31.3 35.4 12 12 4.9 3.6e+03 -1.3 0.0 28 42 544 558 543 566 0.71 Protein of unknown function (FYDLN_acid) # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/REPIN1-209.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/REPIN1-209.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/REPIN1-209.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/REPIN1-209.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/REPIN1-209.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:56:22 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/REPIN1-210.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/REPIN1-210.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/REPIN1-210.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/REPIN1-210.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/REPIN1-210.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:56:23 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/REPIN1-211.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/REPIN1-211.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/REPIN1-211.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/REPIN1-211.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/REPIN1-211.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:56:23 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/REPIN1-212.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/REPIN1-212.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/REPIN1-212.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/REPIN1-212.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/REPIN1-212.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:56:23 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/REPIN1-213.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/REPIN1-213.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/REPIN1-213.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/REPIN1-213.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/REPIN1-213.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:56:24 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-C2H2 PF00096.26 23 REPIN1-214 - 624 2.9e-69 225.8 107.2 1 15 0.001 0.82 10.3 1.1 1 22 114 135 114 135 0.95 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 REPIN1-214 - 624 2.9e-69 225.8 107.2 2 15 3.4e-05 0.027 14.9 0.4 2 23 143 164 142 164 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 REPIN1-214 - 624 2.9e-69 225.8 107.2 3 15 3.2e-06 0.0025 18.2 0.1 1 23 173 195 173 195 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 REPIN1-214 - 624 2.9e-69 225.8 107.2 4 15 0.00014 0.11 13.0 2.7 3 23 204 225 202 225 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 REPIN1-214 - 624 2.9e-69 225.8 107.2 5 15 4e-08 3.1e-05 24.2 0.0 1 23 234 256 234 256 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 REPIN1-214 - 624 2.9e-69 225.8 107.2 6 15 4e-05 0.031 14.7 3.9 1 23 293 315 293 315 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 REPIN1-214 - 624 2.9e-69 225.8 107.2 7 15 7.8e-08 6.1e-05 23.3 2.6 1 23 321 343 321 343 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 REPIN1-214 - 624 2.9e-69 225.8 107.2 8 15 1.9e-06 0.0014 18.9 2.4 1 23 349 371 349 371 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 REPIN1-214 - 624 2.9e-69 225.8 107.2 9 15 1.9e-06 0.0015 18.9 1.1 1 23 432 454 432 454 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 REPIN1-214 - 624 2.9e-69 225.8 107.2 10 15 3.1e-06 0.0024 18.2 0.9 1 23 460 482 460 482 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 REPIN1-214 - 624 2.9e-69 225.8 107.2 11 15 1e-06 0.00082 19.7 0.6 1 23 488 510 488 510 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 REPIN1-214 - 624 2.9e-69 225.8 107.2 12 15 2.1e-08 1.7e-05 25.0 0.5 1 23 516 538 516 538 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 REPIN1-214 - 624 2.9e-69 225.8 107.2 13 15 1e-10 7.9e-08 32.4 0.3 1 23 544 566 544 566 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 REPIN1-214 - 624 2.9e-69 225.8 107.2 14 15 2.3e-09 1.8e-06 28.1 0.9 1 23 572 594 572 594 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 REPIN1-214 - 624 2.9e-69 225.8 107.2 15 15 5.3e-05 0.041 14.3 0.6 1 23 600 622 600 622 0.96 Zinc finger, C2H2 type zf-H2C2_2 PF13465.6 26 REPIN1-214 - 624 1.4e-61 202.3 93.9 1 17 4.1 3.2e+03 -1.2 0.5 15 24 114 123 110 124 0.77 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 REPIN1-214 - 624 1.4e-61 202.3 93.9 2 17 0.11 89 3.8 3.8 14 26 141 153 117 153 0.70 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 REPIN1-214 - 624 1.4e-61 202.3 93.9 3 17 0.066 51 4.5 0.0 5 24 160 182 157 183 0.82 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 REPIN1-214 - 624 1.4e-61 202.3 93.9 4 17 0.00022 0.17 12.3 0.1 1 25 187 212 187 213 0.88 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 REPIN1-214 - 624 1.4e-61 202.3 93.9 5 17 0.0053 4.1 8.0 0.2 2 25 217 244 216 245 0.88 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 REPIN1-214 - 624 1.4e-61 202.3 93.9 6 17 4 3.1e+03 -1.1 0.1 2 9 249 256 248 259 0.89 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 REPIN1-214 - 624 1.4e-61 202.3 93.9 7 17 0.073 57 4.4 0.8 12 26 290 304 288 304 0.89 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 REPIN1-214 - 624 1.4e-61 202.3 93.9 8 17 4e-12 3.2e-09 36.8 0.7 1 26 307 332 307 332 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 REPIN1-214 - 624 1.4e-61 202.3 93.9 9 17 2.1e-09 1.6e-06 28.2 3.5 2 26 336 360 335 360 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 REPIN1-214 - 624 1.4e-61 202.3 93.9 10 17 8.6 6.7e+03 -2.2 0.2 1 10 363 372 363 375 0.85 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 REPIN1-214 - 624 1.4e-61 202.3 93.9 11 17 0.1 79 3.9 0.1 11 24 428 441 419 442 0.81 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 REPIN1-214 - 624 1.4e-61 202.3 93.9 12 17 4.8e-10 3.7e-07 30.3 0.3 2 25 447 470 447 471 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 REPIN1-214 - 624 1.4e-61 202.3 93.9 13 17 6e-09 4.7e-06 26.8 0.3 1 25 474 498 474 499 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 REPIN1-214 - 624 1.4e-61 202.3 93.9 14 17 8.3e-08 6.5e-05 23.2 1.1 1 26 502 527 502 527 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 REPIN1-214 - 624 1.4e-61 202.3 93.9 15 17 1.9e-11 1.5e-08 34.7 0.1 2 25 531 554 530 555 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 REPIN1-214 - 624 1.4e-61 202.3 93.9 16 17 3.9e-11 3e-08 33.7 0.1 1 25 558 582 558 583 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 REPIN1-214 - 624 1.4e-61 202.3 93.9 17 17 0.0012 0.92 10.1 0.1 1 24 586 609 586 610 0.93 Zinc-finger double domain zf-C2H2_4 PF13894.6 24 REPIN1-214 - 624 2.9e-42 139.6 107.1 1 15 0.32 2.5e+02 2.9 3.1 1 21 114 134 114 136 0.85 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 REPIN1-214 - 624 2.9e-42 139.6 107.1 2 15 0.0033 2.5 9.2 0.4 2 23 143 164 142 165 0.80 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 REPIN1-214 - 624 2.9e-42 139.6 107.1 3 15 3.1e-05 0.024 15.4 0.4 1 23 173 195 173 196 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 REPIN1-214 - 624 2.9e-42 139.6 107.1 4 15 1.5e-05 0.012 16.4 2.5 2 24 203 225 202 225 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 REPIN1-214 - 624 2.9e-42 139.6 107.1 5 15 5.7e-05 0.045 14.6 0.1 1 23 234 256 234 257 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 REPIN1-214 - 624 2.9e-42 139.6 107.1 6 15 0.0021 1.7 9.7 3.3 1 23 293 315 293 316 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 REPIN1-214 - 624 2.9e-42 139.6 107.1 7 15 1.3e-05 0.01 16.6 1.5 1 23 321 343 321 344 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 REPIN1-214 - 624 2.9e-42 139.6 107.1 8 15 9.2e-05 0.072 14.0 2.1 1 23 349 371 349 372 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 REPIN1-214 - 624 2.9e-42 139.6 107.1 9 15 0.0001 0.078 13.9 0.7 1 23 432 454 432 455 0.85 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 REPIN1-214 - 624 2.9e-42 139.6 107.1 10 15 0.0005 0.39 11.7 1.0 1 23 460 482 460 483 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 REPIN1-214 - 624 2.9e-42 139.6 107.1 11 15 3.7e-05 0.029 15.2 0.4 1 23 488 510 488 511 0.91 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 REPIN1-214 - 624 2.9e-42 139.6 107.1 12 15 0.00025 0.19 12.6 0.5 1 23 516 538 516 539 0.87 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 REPIN1-214 - 624 2.9e-42 139.6 107.1 13 15 5.5e-06 0.0043 17.8 0.3 1 23 544 566 544 567 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 REPIN1-214 - 624 2.9e-42 139.6 107.1 14 15 1.1e-06 0.00085 20.0 0.4 1 23 572 594 572 595 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 REPIN1-214 - 624 2.9e-42 139.6 107.1 15 15 3.3e-06 0.0026 18.4 0.5 1 23 600 622 600 623 0.97 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 REPIN1-214 - 624 3.7e-14 52.3 84.9 1 15 1 8.1e+02 0.2 0.5 1 17 113 129 113 136 0.77 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 REPIN1-214 - 624 3.7e-14 52.3 84.9 2 15 0.039 30 4.7 0.1 4 12 144 152 143 153 0.91 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 REPIN1-214 - 624 3.7e-14 52.3 84.9 3 15 0.003 2.3 8.3 0.2 2 25 173 196 173 198 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 REPIN1-214 - 624 3.7e-14 52.3 84.9 4 15 0.0023 1.8 8.6 0.3 4 25 204 226 203 228 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 REPIN1-214 - 624 3.7e-14 52.3 84.9 5 15 0.015 12 6.1 0.0 2 24 234 256 234 259 0.92 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 REPIN1-214 - 624 3.7e-14 52.3 84.9 6 15 0.0083 6.5 6.9 1.6 2 24 293 315 293 318 0.92 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 REPIN1-214 - 624 3.7e-14 52.3 84.9 7 15 0.0015 1.2 9.2 0.4 2 12 321 331 321 344 0.85 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 REPIN1-214 - 624 3.7e-14 52.3 84.9 8 15 0.0016 1.3 9.1 1.7 2 25 349 372 349 374 0.85 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 REPIN1-214 - 624 3.7e-14 52.3 84.9 9 15 0.0038 3 8.0 0.3 2 24 432 454 431 457 0.92 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 REPIN1-214 - 624 3.7e-14 52.3 84.9 10 15 0.013 10 6.3 1.4 2 24 460 482 460 485 0.87 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 REPIN1-214 - 624 3.7e-14 52.3 84.9 11 15 0.00094 0.74 9.9 0.3 2 24 488 510 488 512 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 REPIN1-214 - 624 3.7e-14 52.3 84.9 12 15 0.24 1.9e+02 2.2 0.5 2 12 516 526 516 528 0.92 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 REPIN1-214 - 624 3.7e-14 52.3 84.9 13 15 0.011 8.7 6.5 0.1 2 24 544 566 544 569 0.89 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 REPIN1-214 - 624 3.7e-14 52.3 84.9 14 15 3.7e-05 0.028 14.4 0.1 2 24 572 594 572 596 0.96 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 REPIN1-214 - 624 3.7e-14 52.3 84.9 15 15 0.027 21 5.3 0.8 1 12 599 610 599 622 0.76 C2H2-type zinc finger Zn-ribbon_8 PF09723.10 40 REPIN1-214 - 624 2.9e-13 49.7 60.7 1 11 0.0059 4.6 7.4 1.8 7 36 115 151 113 154 0.77 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 REPIN1-214 - 624 2.9e-13 49.7 60.7 2 11 0.00011 0.088 12.9 0.1 6 34 173 209 172 214 0.77 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 REPIN1-214 - 624 2.9e-13 49.7 60.7 3 11 0.13 97 3.2 0.0 6 18 234 246 233 254 0.83 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 REPIN1-214 - 624 2.9e-13 49.7 60.7 4 11 0.00027 0.21 11.7 4.7 6 35 293 329 292 333 0.86 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 REPIN1-214 - 624 2.9e-13 49.7 60.7 5 11 0.021 16 5.7 0.1 6 16 349 359 338 377 0.80 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 REPIN1-214 - 624 2.9e-13 49.7 60.7 6 11 0.00089 0.7 10.1 2.4 6 36 432 469 431 473 0.78 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 REPIN1-214 - 624 2.9e-13 49.7 60.7 7 11 1.4e-05 0.011 15.8 1.9 6 37 488 526 487 529 0.79 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 REPIN1-214 - 624 2.9e-13 49.7 60.7 8 11 1.2e-05 0.009 16.1 1.5 6 35 516 552 515 557 0.88 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 REPIN1-214 - 624 2.9e-13 49.7 60.7 9 11 6.5e-05 0.051 13.7 1.5 6 34 544 579 543 585 0.84 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 REPIN1-214 - 624 2.9e-13 49.7 60.7 10 11 0.19 1.5e+02 2.6 4.5 6 34 572 607 571 611 0.74 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 REPIN1-214 - 624 2.9e-13 49.7 60.7 11 11 0.41 3.2e+02 1.5 0.9 6 16 600 610 599 622 0.78 Zinc ribbon domain zf_UBZ PF18439.1 32 REPIN1-214 - 624 3.7e-12 45.6 51.4 1 15 0.24 1.8e+02 1.8 0.0 4 15 115 126 113 129 0.86 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 REPIN1-214 - 624 3.7e-12 45.6 51.4 2 15 0.054 42 3.9 0.1 4 12 143 151 141 156 0.86 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 REPIN1-214 - 624 3.7e-12 45.6 51.4 3 15 2.3 1.8e+03 -1.3 0.0 3 12 173 182 172 188 0.82 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 REPIN1-214 - 624 3.7e-12 45.6 51.4 4 15 0.17 1.3e+02 2.3 0.1 4 18 203 218 201 221 0.75 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 REPIN1-214 - 624 3.7e-12 45.6 51.4 5 15 0.0021 1.7 8.3 0.1 3 30 234 262 232 264 0.87 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 REPIN1-214 - 624 3.7e-12 45.6 51.4 6 15 0.51 4e+02 0.7 0.6 3 12 293 302 292 311 0.86 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 REPIN1-214 - 624 3.7e-12 45.6 51.4 7 15 0.012 9.4 5.9 0.2 4 13 322 331 320 340 0.81 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 REPIN1-214 - 624 3.7e-12 45.6 51.4 8 15 0.0067 5.2 6.8 0.2 3 20 349 367 347 368 0.85 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 REPIN1-214 - 624 3.7e-12 45.6 51.4 9 15 0.015 12 5.6 0.0 2 13 431 442 430 451 0.82 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 REPIN1-214 - 624 3.7e-12 45.6 51.4 10 15 0.013 10 5.8 0.1 3 12 460 469 458 474 0.90 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 REPIN1-214 - 624 3.7e-12 45.6 51.4 11 15 0.01 7.9 6.2 0.1 3 15 488 500 486 507 0.81 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 REPIN1-214 - 624 3.7e-12 45.6 51.4 12 15 0.011 8.8 6.0 0.0 3 12 516 525 514 534 0.88 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 REPIN1-214 - 624 3.7e-12 45.6 51.4 13 15 0.0011 0.82 9.3 0.1 3 20 544 562 542 563 0.79 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 REPIN1-214 - 624 3.7e-12 45.6 51.4 14 15 0.015 12 5.6 0.1 3 15 572 584 570 591 0.80 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 REPIN1-214 - 624 3.7e-12 45.6 51.4 15 15 0.034 26 4.5 0.2 3 17 600 614 598 619 0.80 Ubiquitin-Binding Zinc Finger FYDLN_acid PF09538.10 106 REPIN1-214 - 624 5.1e-07 30.3 34.6 1 10 0.024 19 6.0 0.0 24 52 139 167 137 171 0.81 Protein of unknown function (FYDLN_acid) FYDLN_acid PF09538.10 106 REPIN1-214 - 624 5.1e-07 30.3 34.6 2 10 0.0084 6.5 7.5 0.2 24 43 199 218 197 232 0.76 Protein of unknown function (FYDLN_acid) FYDLN_acid PF09538.10 106 REPIN1-214 - 624 5.1e-07 30.3 34.6 3 10 0.18 1.4e+02 3.2 0.0 25 52 232 260 229 274 0.62 Protein of unknown function (FYDLN_acid) FYDLN_acid PF09538.10 106 REPIN1-214 - 624 5.1e-07 30.3 34.6 4 10 1.4 1.1e+03 0.3 0.2 25 41 291 307 287 320 0.72 Protein of unknown function (FYDLN_acid) FYDLN_acid PF09538.10 106 REPIN1-214 - 624 5.1e-07 30.3 34.6 5 10 0.017 13 6.5 0.7 24 49 318 343 316 352 0.77 Protein of unknown function (FYDLN_acid) FYDLN_acid PF09538.10 106 REPIN1-214 - 624 5.1e-07 30.3 34.6 6 10 0.27 2.1e+02 2.6 0.1 24 41 457 474 434 487 0.81 Protein of unknown function (FYDLN_acid) FYDLN_acid PF09538.10 106 REPIN1-214 - 624 5.1e-07 30.3 34.6 7 10 0.014 11 6.8 0.4 25 46 514 535 489 542 0.82 Protein of unknown function (FYDLN_acid) FYDLN_acid PF09538.10 106 REPIN1-214 - 624 5.1e-07 30.3 34.6 8 10 0.0098 7.7 7.3 0.1 24 46 541 563 538 571 0.77 Protein of unknown function (FYDLN_acid) FYDLN_acid PF09538.10 106 REPIN1-214 - 624 5.1e-07 30.3 34.6 9 10 0.13 98 3.7 0.1 24 42 569 587 567 600 0.76 Protein of unknown function (FYDLN_acid) FYDLN_acid PF09538.10 106 REPIN1-214 - 624 5.1e-07 30.3 34.6 10 10 4.4 3.4e+03 -1.3 0.0 28 42 601 615 596 623 0.74 Protein of unknown function (FYDLN_acid) # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/REPIN1-214.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/REPIN1-214.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/REPIN1-214.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/REPIN1-214.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/REPIN1-214.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:56:24 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/REPIN1-215.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/REPIN1-215.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/REPIN1-215.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/REPIN1-215.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/REPIN1-215.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:56:25 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/REPIN1-216.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/REPIN1-216.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/REPIN1-216.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/REPIN1-216.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/REPIN1-216.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:56:25 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/REPIN1-217.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/REPIN1-217.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/REPIN1-217.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/REPIN1-217.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/REPIN1-217.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:56:25 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/REPIN1-218.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/REPIN1-218.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/REPIN1-218.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/REPIN1-218.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/REPIN1-218.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:56:26 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/REPIN1-219.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/REPIN1-219.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/REPIN1-219.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/REPIN1-219.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/REPIN1-219.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:56:26 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 REST-201 - 1097 3.3e-30 103.1 67.3 1 11 0.063 1.9e+02 2.8 1.0 12 23 156 167 151 170 0.82 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 REST-201 - 1097 3.3e-30 103.1 67.3 2 11 0.016 49 4.6 0.0 4 25 176 226 173 227 0.71 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 REST-201 - 1097 3.3e-30 103.1 67.3 3 11 1.7e-05 0.05 14.0 1.6 1 25 230 258 230 259 0.86 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 REST-201 - 1097 3.3e-30 103.1 67.3 4 11 4.6e-05 0.14 12.7 3.4 2 23 263 284 262 287 0.90 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 REST-201 - 1097 3.3e-30 103.1 67.3 5 11 5.2e-11 1.5e-07 31.5 0.6 1 24 290 313 290 315 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 REST-201 - 1097 3.3e-30 103.1 67.3 6 11 1.4e-11 4.3e-08 33.2 1.3 1 25 318 342 318 343 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 REST-201 - 1097 3.3e-30 103.1 67.3 7 11 8.6e-09 2.6e-05 24.5 0.6 3 24 348 370 346 372 0.90 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 REST-201 - 1097 3.3e-30 103.1 67.3 8 11 4.1e-06 0.012 16.0 0.5 1 25 375 399 375 400 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 REST-201 - 1097 3.3e-30 103.1 67.3 9 11 0.095 2.8e+02 2.2 0.1 1 10 403 413 403 419 0.80 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 REST-201 - 1097 3.3e-30 103.1 67.3 10 11 0.035 1e+02 3.6 0.2 15 25 1060 1070 1055 1071 0.86 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 REST-201 - 1097 3.3e-30 103.1 67.3 11 11 6 1.8e+04 -3.5 0.4 1 5 1078 1082 1075 1084 0.64 Zinc-finger double domain zf-H2C2_5 PF13909.6 26 REST-201 - 1097 1e-21 76.4 73.3 1 9 0.0031 9.2 6.1 0.1 1 25 159 182 159 183 0.96 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 REST-201 - 1097 1e-21 76.4 73.3 2 9 6 1.8e+04 -5.8 5.0 2 25 217 239 217 240 0.74 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 REST-201 - 1097 1e-21 76.4 73.3 3 9 0.2 5.9e+02 0.4 3.6 1 24 248 270 248 271 0.88 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 REST-201 - 1097 1e-21 76.4 73.3 4 9 8.6e-06 0.026 14.3 2.2 2 26 277 300 276 300 0.92 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 REST-201 - 1097 1e-21 76.4 73.3 5 9 2.8e-11 8.3e-08 31.9 4.8 1 26 304 328 304 328 0.99 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 REST-201 - 1097 1e-21 76.4 73.3 6 9 8.7e-10 2.6e-06 27.1 0.6 1 26 332 357 332 357 0.98 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 REST-201 - 1097 1e-21 76.4 73.3 7 9 2.1e-09 6.3e-06 25.8 1.2 3 24 363 383 361 385 0.95 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 REST-201 - 1097 1e-21 76.4 73.3 8 9 1.7e-06 0.005 16.6 2.4 2 24 390 412 389 414 0.93 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 REST-201 - 1097 1e-21 76.4 73.3 9 9 1.1 3.2e+03 -2.0 0.1 12 20 1075 1083 1074 1086 0.79 C2H2-type zinc-finger domain zf-C2H2 PF00096.26 23 REST-201 - 1097 3.5e-13 49.2 81.6 1 9 0.017 49 4.6 0.7 1 23 159 181 159 181 0.95 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 REST-201 - 1097 3.5e-13 49.2 81.6 2 9 0.0011 3.3 8.4 4.0 2 23 217 238 216 238 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 REST-201 - 1097 3.5e-13 49.2 81.6 3 9 0.0008 2.4 8.8 2.8 1 23 248 270 248 270 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 REST-201 - 1097 3.5e-13 49.2 81.6 4 9 3.2e-05 0.094 13.2 2.2 1 23 276 298 276 298 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 REST-201 - 1097 3.5e-13 49.2 81.6 5 9 1.2e-07 0.00035 20.9 4.5 1 23 304 326 304 326 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 REST-201 - 1097 3.5e-13 49.2 81.6 6 9 0.00014 0.42 11.2 1.1 1 23 332 355 332 355 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 REST-201 - 1097 3.5e-13 49.2 81.6 7 9 2.7e-05 0.079 13.4 1.6 2 23 362 383 361 383 0.94 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 REST-201 - 1097 3.5e-13 49.2 81.6 8 9 0.0022 6.7 7.4 2.9 1 23 389 412 389 412 0.95 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 REST-201 - 1097 3.5e-13 49.2 81.6 9 9 0.00094 2.8 8.6 1.9 1 23 1060 1082 1060 1082 0.94 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 REST-201 - 1097 1.1e-09 38.3 74.4 1 9 0.012 34 5.6 1.2 1 23 159 181 159 182 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 REST-201 - 1097 1.1e-09 38.3 74.4 2 9 0.03 91 4.3 2.0 2 23 217 238 216 239 0.89 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 REST-201 - 1097 1.1e-09 38.3 74.4 3 9 0.00017 0.5 11.3 2.5 1 23 248 270 248 271 0.81 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 REST-201 - 1097 1.1e-09 38.3 74.4 4 9 0.0045 13 6.9 0.9 1 23 276 298 276 299 0.79 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 REST-201 - 1097 1.1e-09 38.3 74.4 5 9 9.2e-06 0.027 15.3 3.3 1 23 304 326 304 327 0.80 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 REST-201 - 1097 1.1e-09 38.3 74.4 6 9 0.00038 1.1 10.2 1.3 1 24 332 355 332 355 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 REST-201 - 1097 1.1e-09 38.3 74.4 7 9 0.0011 3.3 8.8 0.9 2 23 362 383 361 384 0.76 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 REST-201 - 1097 1.1e-09 38.3 74.4 8 9 0.0015 4.6 8.4 2.9 1 24 389 412 389 412 0.86 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 REST-201 - 1097 1.1e-09 38.3 74.4 9 9 4.6e-05 0.14 13.1 1.2 1 23 1060 1082 1060 1083 0.94 C2H2-type zinc finger # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/REST-201.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/REST-201.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/REST-201.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/REST-201.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/REST-201.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:56:26 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/REST-202.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/REST-202.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/REST-202.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/REST-202.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/REST-202.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:56:27 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/REST-203.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/REST-203.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/REST-203.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/REST-203.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/REST-203.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:56:27 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/REST-204.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/REST-204.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/REST-204.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/REST-204.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/REST-204.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:56:27 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 REST-205 - 340 1.1e-15 57.3 43.2 1 6 0.028 55 4.4 1.2 11 23 155 167 150 170 0.82 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 REST-205 - 340 1.1e-15 57.3 43.2 2 6 0.0073 15 6.3 0.5 4 25 176 226 173 227 0.73 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 REST-205 - 340 1.1e-15 57.3 43.2 3 6 6.1e-06 0.012 16.0 1.6 1 25 230 258 230 259 0.86 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 REST-205 - 340 1.1e-15 57.3 43.2 4 6 1.7e-05 0.035 14.6 3.4 2 23 263 284 262 287 0.90 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 REST-205 - 340 1.1e-15 57.3 43.2 5 6 1.9e-11 3.9e-08 33.4 0.6 1 24 290 313 290 315 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 REST-205 - 340 1.1e-15 57.3 43.2 6 6 0.0038 7.5 7.2 1.6 1 11 318 328 318 330 0.92 Zinc-finger double domain zf-C2H2 PF00096.26 23 REST-205 - 340 7.4e-11 41.9 44.2 1 5 0.0062 12 6.5 0.7 1 23 159 181 159 181 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 REST-205 - 340 7.4e-11 41.9 44.2 2 5 0.00041 0.82 10.2 4.0 2 23 217 238 216 238 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 REST-205 - 340 7.4e-11 41.9 44.2 3 5 0.0003 0.6 10.7 2.8 1 23 248 270 248 270 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 REST-205 - 340 7.4e-11 41.9 44.2 4 5 1.2e-05 0.024 15.1 2.2 1 23 276 298 276 298 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 REST-205 - 340 7.4e-11 41.9 44.2 5 5 4.4e-08 8.7e-05 22.8 4.5 1 23 304 326 304 326 0.99 Zinc finger, C2H2 type zf-H2C2_5 PF13909.6 26 REST-205 - 340 2.3e-09 36.8 14.6 1 5 0.0012 2.3 8.0 0.1 1 25 159 182 159 183 0.97 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 REST-205 - 340 2.3e-09 36.8 14.6 2 5 6.6 1.3e+04 -4.0 5.1 2 25 217 239 217 240 0.74 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 REST-205 - 340 2.3e-09 36.8 14.6 3 5 0.076 1.5e+02 2.2 3.6 1 24 248 270 248 271 0.88 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 REST-205 - 340 2.3e-09 36.8 14.6 4 5 3.3e-06 0.0066 16.2 2.2 2 26 277 300 276 300 0.92 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 REST-205 - 340 2.3e-09 36.8 14.6 5 5 1e-11 2.1e-08 33.8 4.8 1 26 304 328 304 328 0.99 C2H2-type zinc-finger domain zf-C2H2_4 PF13894.6 24 REST-205 - 340 3.8e-07 30.4 39.0 1 5 0.0043 8.5 7.5 1.2 1 23 159 181 159 182 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 REST-205 - 340 3.8e-07 30.4 39.0 2 5 0.011 22 6.2 2.0 2 23 217 238 216 239 0.89 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 REST-205 - 340 3.8e-07 30.4 39.0 3 5 6.2e-05 0.12 13.2 2.5 1 23 248 270 248 271 0.81 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 REST-205 - 340 3.8e-07 30.4 39.0 4 5 0.0016 3.3 8.8 0.9 1 23 276 298 276 299 0.79 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 REST-205 - 340 3.8e-07 30.4 39.0 5 5 3.4e-06 0.0067 17.2 3.3 1 23 304 326 304 327 0.80 C2H2-type zinc finger # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/REST-205.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/REST-205.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/REST-205.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/REST-205.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/REST-205.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:56:28 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 REST-206 - 342 1.8e-16 59.7 43.1 1 6 0.028 55 4.4 1.2 11 23 155 167 150 170 0.82 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 REST-206 - 342 1.8e-16 59.7 43.1 2 6 0.0074 15 6.3 0.5 4 25 176 226 173 227 0.73 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 REST-206 - 342 1.8e-16 59.7 43.1 3 6 6.2e-06 0.012 16.0 1.6 1 25 230 258 230 259 0.86 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 REST-206 - 342 1.8e-16 59.7 43.1 4 6 1.7e-05 0.035 14.5 3.4 2 23 263 284 262 287 0.90 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 REST-206 - 342 1.8e-16 59.7 43.1 5 6 1.9e-11 3.9e-08 33.4 0.6 1 24 290 313 290 315 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 REST-206 - 342 1.8e-16 59.7 43.1 6 6 0.0006 1.2 9.7 1.5 1 18 318 336 318 337 0.77 Zinc-finger double domain zf-C2H2 PF00096.26 23 REST-206 - 342 7.5e-11 41.9 44.2 1 5 0.0063 13 6.5 0.7 1 23 159 181 159 181 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 REST-206 - 342 7.5e-11 41.9 44.2 2 5 0.00042 0.83 10.2 4.0 2 23 217 238 216 238 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 REST-206 - 342 7.5e-11 41.9 44.2 3 5 0.0003 0.61 10.7 2.8 1 23 248 270 248 270 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 REST-206 - 342 7.5e-11 41.9 44.2 4 5 1.2e-05 0.024 15.1 2.2 1 23 276 298 276 298 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 REST-206 - 342 7.5e-11 41.9 44.2 5 5 4.4e-08 8.7e-05 22.8 4.5 1 23 304 326 304 326 0.99 Zinc finger, C2H2 type zf-H2C2_5 PF13909.6 26 REST-206 - 342 2.4e-09 36.8 14.6 1 5 0.0012 2.4 8.0 0.1 1 25 159 182 159 183 0.97 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 REST-206 - 342 2.4e-09 36.8 14.6 2 5 6.7 1.3e+04 -4.0 5.1 2 25 217 239 217 240 0.74 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 REST-206 - 342 2.4e-09 36.8 14.6 3 5 0.077 1.5e+02 2.2 3.6 1 24 248 270 248 271 0.88 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 REST-206 - 342 2.4e-09 36.8 14.6 4 5 3.3e-06 0.0066 16.2 2.2 2 26 277 300 276 300 0.92 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 REST-206 - 342 2.4e-09 36.8 14.6 5 5 1.1e-11 2.1e-08 33.8 4.8 1 26 304 328 304 328 0.99 C2H2-type zinc-finger domain zf-C2H2_4 PF13894.6 24 REST-206 - 342 3.6e-07 30.5 39.0 1 5 0.0043 8.5 7.5 1.2 1 23 159 181 159 182 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 REST-206 - 342 3.6e-07 30.5 39.0 2 5 0.011 23 6.2 2.0 2 23 217 238 216 239 0.89 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 REST-206 - 342 3.6e-07 30.5 39.0 3 5 6.3e-05 0.13 13.2 2.5 1 23 248 270 248 271 0.81 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 REST-206 - 342 3.6e-07 30.5 39.0 4 5 0.0017 3.3 8.8 0.9 1 23 276 298 276 299 0.79 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 REST-206 - 342 3.6e-07 30.5 39.0 5 5 3.4e-06 0.0068 17.2 3.3 1 23 304 326 304 327 0.80 C2H2-type zinc finger # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/REST-206.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/REST-206.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/REST-206.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/REST-206.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/REST-206.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:56:28 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 REST-207 - 340 1.1e-15 57.3 43.2 1 6 0.028 55 4.4 1.2 11 23 155 167 150 170 0.82 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 REST-207 - 340 1.1e-15 57.3 43.2 2 6 0.0073 15 6.3 0.5 4 25 176 226 173 227 0.73 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 REST-207 - 340 1.1e-15 57.3 43.2 3 6 6.1e-06 0.012 16.0 1.6 1 25 230 258 230 259 0.86 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 REST-207 - 340 1.1e-15 57.3 43.2 4 6 1.7e-05 0.035 14.6 3.4 2 23 263 284 262 287 0.90 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 REST-207 - 340 1.1e-15 57.3 43.2 5 6 1.9e-11 3.9e-08 33.4 0.6 1 24 290 313 290 315 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 REST-207 - 340 1.1e-15 57.3 43.2 6 6 0.0038 7.5 7.2 1.6 1 11 318 328 318 330 0.92 Zinc-finger double domain zf-C2H2 PF00096.26 23 REST-207 - 340 7.4e-11 41.9 44.2 1 5 0.0062 12 6.5 0.7 1 23 159 181 159 181 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 REST-207 - 340 7.4e-11 41.9 44.2 2 5 0.00041 0.82 10.2 4.0 2 23 217 238 216 238 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 REST-207 - 340 7.4e-11 41.9 44.2 3 5 0.0003 0.6 10.7 2.8 1 23 248 270 248 270 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 REST-207 - 340 7.4e-11 41.9 44.2 4 5 1.2e-05 0.024 15.1 2.2 1 23 276 298 276 298 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 REST-207 - 340 7.4e-11 41.9 44.2 5 5 4.4e-08 8.7e-05 22.8 4.5 1 23 304 326 304 326 0.99 Zinc finger, C2H2 type zf-H2C2_5 PF13909.6 26 REST-207 - 340 2.3e-09 36.8 14.6 1 5 0.0012 2.3 8.0 0.1 1 25 159 182 159 183 0.97 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 REST-207 - 340 2.3e-09 36.8 14.6 2 5 6.6 1.3e+04 -4.0 5.1 2 25 217 239 217 240 0.74 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 REST-207 - 340 2.3e-09 36.8 14.6 3 5 0.076 1.5e+02 2.2 3.6 1 24 248 270 248 271 0.88 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 REST-207 - 340 2.3e-09 36.8 14.6 4 5 3.3e-06 0.0066 16.2 2.2 2 26 277 300 276 300 0.92 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 REST-207 - 340 2.3e-09 36.8 14.6 5 5 1e-11 2.1e-08 33.8 4.8 1 26 304 328 304 328 0.99 C2H2-type zinc-finger domain zf-C2H2_4 PF13894.6 24 REST-207 - 340 3.8e-07 30.4 39.0 1 5 0.0043 8.5 7.5 1.2 1 23 159 181 159 182 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 REST-207 - 340 3.8e-07 30.4 39.0 2 5 0.011 22 6.2 2.0 2 23 217 238 216 239 0.89 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 REST-207 - 340 3.8e-07 30.4 39.0 3 5 6.2e-05 0.12 13.2 2.5 1 23 248 270 248 271 0.81 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 REST-207 - 340 3.8e-07 30.4 39.0 4 5 0.0016 3.3 8.8 0.9 1 23 276 298 276 299 0.79 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 REST-207 - 340 3.8e-07 30.4 39.0 5 5 3.4e-06 0.0067 17.2 3.3 1 23 304 326 304 327 0.80 C2H2-type zinc finger # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/REST-207.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/REST-207.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/REST-207.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/REST-207.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/REST-207.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:56:29 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 REST-208 - 1097 3.3e-30 103.1 67.3 1 11 0.063 1.9e+02 2.8 1.0 12 23 156 167 151 170 0.82 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 REST-208 - 1097 3.3e-30 103.1 67.3 2 11 0.016 49 4.6 0.0 4 25 176 226 173 227 0.71 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 REST-208 - 1097 3.3e-30 103.1 67.3 3 11 1.7e-05 0.05 14.0 1.6 1 25 230 258 230 259 0.86 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 REST-208 - 1097 3.3e-30 103.1 67.3 4 11 4.6e-05 0.14 12.7 3.4 2 23 263 284 262 287 0.90 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 REST-208 - 1097 3.3e-30 103.1 67.3 5 11 5.2e-11 1.5e-07 31.5 0.6 1 24 290 313 290 315 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 REST-208 - 1097 3.3e-30 103.1 67.3 6 11 1.4e-11 4.3e-08 33.2 1.3 1 25 318 342 318 343 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 REST-208 - 1097 3.3e-30 103.1 67.3 7 11 8.6e-09 2.6e-05 24.5 0.6 3 24 348 370 346 372 0.90 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 REST-208 - 1097 3.3e-30 103.1 67.3 8 11 4.1e-06 0.012 16.0 0.5 1 25 375 399 375 400 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 REST-208 - 1097 3.3e-30 103.1 67.3 9 11 0.095 2.8e+02 2.2 0.1 1 10 403 413 403 419 0.80 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 REST-208 - 1097 3.3e-30 103.1 67.3 10 11 0.035 1e+02 3.6 0.2 15 25 1060 1070 1055 1071 0.86 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 REST-208 - 1097 3.3e-30 103.1 67.3 11 11 6 1.8e+04 -3.5 0.4 1 5 1078 1082 1075 1084 0.64 Zinc-finger double domain zf-H2C2_5 PF13909.6 26 REST-208 - 1097 1e-21 76.4 73.3 1 9 0.0031 9.2 6.1 0.1 1 25 159 182 159 183 0.96 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 REST-208 - 1097 1e-21 76.4 73.3 2 9 6 1.8e+04 -5.8 5.0 2 25 217 239 217 240 0.74 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 REST-208 - 1097 1e-21 76.4 73.3 3 9 0.2 5.9e+02 0.4 3.6 1 24 248 270 248 271 0.88 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 REST-208 - 1097 1e-21 76.4 73.3 4 9 8.6e-06 0.026 14.3 2.2 2 26 277 300 276 300 0.92 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 REST-208 - 1097 1e-21 76.4 73.3 5 9 2.8e-11 8.3e-08 31.9 4.8 1 26 304 328 304 328 0.99 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 REST-208 - 1097 1e-21 76.4 73.3 6 9 8.7e-10 2.6e-06 27.1 0.6 1 26 332 357 332 357 0.98 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 REST-208 - 1097 1e-21 76.4 73.3 7 9 2.1e-09 6.3e-06 25.8 1.2 3 24 363 383 361 385 0.95 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 REST-208 - 1097 1e-21 76.4 73.3 8 9 1.7e-06 0.005 16.6 2.4 2 24 390 412 389 414 0.93 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 REST-208 - 1097 1e-21 76.4 73.3 9 9 1.1 3.2e+03 -2.0 0.1 12 20 1075 1083 1074 1086 0.79 C2H2-type zinc-finger domain zf-C2H2 PF00096.26 23 REST-208 - 1097 3.5e-13 49.2 81.6 1 9 0.017 49 4.6 0.7 1 23 159 181 159 181 0.95 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 REST-208 - 1097 3.5e-13 49.2 81.6 2 9 0.0011 3.3 8.4 4.0 2 23 217 238 216 238 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 REST-208 - 1097 3.5e-13 49.2 81.6 3 9 0.0008 2.4 8.8 2.8 1 23 248 270 248 270 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 REST-208 - 1097 3.5e-13 49.2 81.6 4 9 3.2e-05 0.094 13.2 2.2 1 23 276 298 276 298 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 REST-208 - 1097 3.5e-13 49.2 81.6 5 9 1.2e-07 0.00035 20.9 4.5 1 23 304 326 304 326 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 REST-208 - 1097 3.5e-13 49.2 81.6 6 9 0.00014 0.42 11.2 1.1 1 23 332 355 332 355 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 REST-208 - 1097 3.5e-13 49.2 81.6 7 9 2.7e-05 0.079 13.4 1.6 2 23 362 383 361 383 0.94 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 REST-208 - 1097 3.5e-13 49.2 81.6 8 9 0.0022 6.7 7.4 2.9 1 23 389 412 389 412 0.95 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 REST-208 - 1097 3.5e-13 49.2 81.6 9 9 0.00094 2.8 8.6 1.9 1 23 1060 1082 1060 1082 0.94 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 REST-208 - 1097 1.1e-09 38.3 74.4 1 9 0.012 34 5.6 1.2 1 23 159 181 159 182 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 REST-208 - 1097 1.1e-09 38.3 74.4 2 9 0.03 91 4.3 2.0 2 23 217 238 216 239 0.89 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 REST-208 - 1097 1.1e-09 38.3 74.4 3 9 0.00017 0.5 11.3 2.5 1 23 248 270 248 271 0.81 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 REST-208 - 1097 1.1e-09 38.3 74.4 4 9 0.0045 13 6.9 0.9 1 23 276 298 276 299 0.79 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 REST-208 - 1097 1.1e-09 38.3 74.4 5 9 9.2e-06 0.027 15.3 3.3 1 23 304 326 304 327 0.80 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 REST-208 - 1097 1.1e-09 38.3 74.4 6 9 0.00038 1.1 10.2 1.3 1 24 332 355 332 355 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 REST-208 - 1097 1.1e-09 38.3 74.4 7 9 0.0011 3.3 8.8 0.9 2 23 362 383 361 384 0.76 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 REST-208 - 1097 1.1e-09 38.3 74.4 8 9 0.0015 4.6 8.4 2.9 1 24 389 412 389 412 0.86 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 REST-208 - 1097 1.1e-09 38.3 74.4 9 9 4.6e-05 0.14 13.1 1.2 1 23 1060 1082 1060 1083 0.94 C2H2-type zinc finger # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/REST-208.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/REST-208.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/REST-208.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/REST-208.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/REST-208.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:56:29 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 REST-209 - 314 6.6e-15 54.8 37.4 1 6 2.1e-05 0.047 14.1 0.5 5 25 102 126 99 127 0.86 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 REST-209 - 314 6.6e-15 54.8 37.4 2 6 1.4e-05 0.031 14.7 3.4 2 23 131 152 130 155 0.90 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 REST-209 - 314 6.6e-15 54.8 37.4 3 6 1.6e-11 3.5e-08 33.5 0.6 1 24 158 181 158 183 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 REST-209 - 314 6.6e-15 54.8 37.4 4 6 0.00051 1.2 9.7 1.6 1 12 186 197 186 200 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 REST-209 - 314 6.6e-15 54.8 37.4 5 6 0.012 26 5.5 0.3 15 25 277 287 271 288 0.86 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 REST-209 - 314 6.6e-15 54.8 37.4 6 6 1.1 2.5e+03 -0.8 0.2 4 9 294 299 291 302 0.57 Zinc-finger double domain zf-H2C2_5 PF13909.6 26 REST-209 - 314 1.8e-09 37.2 14.6 1 7 8 1.8e+04 -5.0 1.4 6 8 63 65 63 65 0.90 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 REST-209 - 314 1.8e-09 37.2 14.6 2 7 0.65 1.5e+03 -0.9 0.4 13 20 100 107 96 109 0.60 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 REST-209 - 314 1.8e-09 37.2 14.6 3 7 0.061 1.4e+02 2.4 3.6 1 24 116 138 116 139 0.88 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 REST-209 - 314 1.8e-09 37.2 14.6 4 7 2.7e-06 0.006 16.3 2.2 2 26 145 168 144 168 0.92 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 REST-209 - 314 1.8e-09 37.2 14.6 5 7 8.4e-12 1.9e-08 33.9 4.8 1 26 172 196 172 196 0.99 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 REST-209 - 314 1.8e-09 37.2 14.6 6 7 7.1 1.6e+04 -4.2 0.5 3 7 279 283 279 283 0.86 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 REST-209 - 314 1.8e-09 37.2 14.6 7 7 0.37 8.2e+02 -0.1 0.1 12 20 292 300 291 303 0.79 C2H2-type zinc-finger domain zf-C2H2 PF00096.26 23 REST-209 - 314 3.2e-09 36.7 41.2 1 5 1 2.3e+03 -0.6 0.5 14 21 101 108 100 109 0.82 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 REST-209 - 314 3.2e-09 36.7 41.2 2 5 0.00024 0.54 10.8 2.8 1 23 116 138 116 138 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 REST-209 - 314 3.2e-09 36.7 41.2 3 5 9.5e-06 0.021 15.2 2.2 1 23 144 166 144 166 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 REST-209 - 314 3.2e-09 36.7 41.2 4 5 3.5e-08 7.8e-05 22.9 4.5 1 23 172 194 172 194 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 REST-209 - 314 3.2e-09 36.7 41.2 5 5 0.00029 0.64 10.6 1.9 1 23 277 299 277 299 0.94 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 REST-209 - 314 9.1e-09 35.4 33.9 1 5 1.8 4.1e+03 -0.8 0.1 16 23 99 106 92 107 0.71 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 REST-209 - 314 9.1e-09 35.4 33.9 2 5 5e-05 0.11 13.4 2.5 1 23 116 138 116 139 0.81 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 REST-209 - 314 9.1e-09 35.4 33.9 3 5 0.0013 3 8.9 0.9 1 23 144 166 144 167 0.79 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 REST-209 - 314 9.1e-09 35.4 33.9 4 5 2.7e-06 0.0061 17.3 3.3 1 23 172 194 172 195 0.80 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 REST-209 - 314 9.1e-09 35.4 33.9 5 5 1.4e-05 0.031 15.1 1.2 1 23 277 299 277 300 0.94 C2H2-type zinc finger # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/REST-209.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/REST-209.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/REST-209.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/REST-209.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/REST-209.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:56:30 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/REST-210.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/REST-210.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/REST-210.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/REST-210.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/REST-210.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:56:30 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/REST-211.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/REST-211.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/REST-211.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/REST-211.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/REST-211.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:56:30 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/REST-212.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/REST-212.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/REST-212.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/REST-212.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/REST-212.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:56:31 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-C2H2 PF00096.26 23 RLF-201 - 1914 3.8e-13 49.1 111.0 1 14 0.00017 1 9.9 0.6 1 23 582 604 582 604 0.94 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 RLF-201 - 1914 3.8e-13 49.1 111.0 2 14 3.2e-06 0.019 15.4 0.3 1 23 671 696 671 696 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 RLF-201 - 1914 3.8e-13 49.1 111.0 3 14 0.001 6.1 7.5 5.1 2 23 715 736 715 736 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 RLF-201 - 1914 3.8e-13 49.1 111.0 4 14 0.025 1.5e+02 3.1 0.2 1 23 742 766 742 766 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 RLF-201 - 1914 3.8e-13 49.1 111.0 5 14 8.9e-05 0.53 10.8 0.3 1 23 771 795 771 795 0.95 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 RLF-201 - 1914 3.8e-13 49.1 111.0 6 14 0.00029 1.8 9.2 2.1 1 23 801 825 801 825 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 RLF-201 - 1914 3.8e-13 49.1 111.0 7 14 3.8e-05 0.23 12.0 0.4 1 23 954 979 954 979 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 RLF-201 - 1914 3.8e-13 49.1 111.0 8 14 0.0015 9 7.0 0.5 1 23 1127 1152 1127 1152 0.93 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 RLF-201 - 1914 3.8e-13 49.1 111.0 9 14 4.4e-07 0.0026 18.1 7.4 1 23 1172 1195 1172 1195 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 RLF-201 - 1914 3.8e-13 49.1 111.0 10 14 0.0018 11 6.7 3.6 5 23 1316 1335 1311 1335 0.94 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 RLF-201 - 1914 3.8e-13 49.1 111.0 11 14 0.73 4.3e+03 -1.5 1.2 1 10 1362 1373 1362 1382 0.85 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 RLF-201 - 1914 3.8e-13 49.1 111.0 12 14 0.0012 7.2 7.3 1.6 1 23 1407 1432 1407 1432 0.95 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 RLF-201 - 1914 3.8e-13 49.1 111.0 13 14 0.00078 4.7 7.9 1.9 3 23 1446 1469 1444 1469 0.87 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 RLF-201 - 1914 3.8e-13 49.1 111.0 14 14 0.93 5.6e+03 -1.8 0.2 1 23 1549 1574 1549 1574 0.75 Zinc finger, C2H2 type # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/RLF-201.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/RLF-201.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/RLF-201.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/RLF-201.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/RLF-201.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:56:31 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-C2H2 PF00096.26 23 RREB1-201 - 1476 2.3e-35 119.1 118.2 1 14 2.1e-05 0.037 14.5 1.7 1 21 66 86 66 87 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 RREB1-201 - 1476 2.3e-35 119.1 118.2 2 14 8.4e-07 0.0015 18.9 0.7 1 23 97 119 97 119 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 RREB1-201 - 1476 2.3e-35 119.1 118.2 3 14 3.4e-08 6.1e-05 23.3 2.6 1 23 125 147 125 147 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 RREB1-201 - 1476 2.3e-35 119.1 118.2 4 14 0.0011 2 9.0 3.6 1 23 208 230 208 230 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 RREB1-201 - 1476 2.3e-35 119.1 118.2 5 14 0.17 3.1e+02 2.1 2.2 2 23 236 258 235 258 0.89 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 RREB1-201 - 1476 2.3e-35 119.1 118.2 6 14 5.5e-05 0.099 13.1 1.0 1 23 316 338 316 338 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 RREB1-201 - 1476 2.3e-35 119.1 118.2 7 14 0.0001 0.18 12.3 0.3 1 23 643 665 643 665 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 RREB1-201 - 1476 2.3e-35 119.1 118.2 8 14 7.1e-06 0.013 15.9 0.0 1 23 671 693 671 693 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 RREB1-201 - 1476 2.3e-35 119.1 118.2 9 14 0.00029 0.51 10.9 4.8 1 23 699 722 699 722 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 RREB1-201 - 1476 2.3e-35 119.1 118.2 10 14 0.00011 0.19 12.2 1.3 2 23 754 775 753 775 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 RREB1-201 - 1476 2.3e-35 119.1 118.2 11 14 0.0037 6.6 7.4 1.7 1 23 790 813 790 813 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 RREB1-201 - 1476 2.3e-35 119.1 118.2 12 14 4.2e-07 0.00074 19.8 0.5 2 23 1247 1268 1246 1268 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 RREB1-201 - 1476 2.3e-35 119.1 118.2 13 14 0.00021 0.37 11.3 4.0 1 23 1274 1297 1274 1297 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 RREB1-201 - 1476 2.3e-35 119.1 118.2 14 14 1.9e-06 0.0034 17.8 4.0 1 23 1329 1351 1329 1351 0.99 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 RREB1-201 - 1476 6.9e-30 101.2 113.0 1 14 0.0017 3 8.9 0.9 1 21 66 86 66 88 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 RREB1-201 - 1476 6.9e-30 101.2 113.0 2 14 4.2e-06 0.0075 17.0 1.0 1 23 97 119 97 120 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 RREB1-201 - 1476 6.9e-30 101.2 113.0 3 14 1.8e-07 0.00031 21.3 1.0 1 23 125 147 125 148 0.97 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 RREB1-201 - 1476 6.9e-30 101.2 113.0 4 14 1.6e-06 0.0029 18.3 4.0 1 23 208 230 208 231 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 RREB1-201 - 1476 6.9e-30 101.2 113.0 5 14 0.00061 1.1 10.3 1.6 2 19 236 253 235 258 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 RREB1-201 - 1476 6.9e-30 101.2 113.0 6 14 0.016 29 5.8 1.0 1 23 316 338 316 339 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 RREB1-201 - 1476 6.9e-30 101.2 113.0 7 14 3e-05 0.053 14.4 0.4 1 23 643 665 643 666 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 RREB1-201 - 1476 6.9e-30 101.2 113.0 8 14 0.00016 0.28 12.1 0.0 1 23 671 693 671 694 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 RREB1-201 - 1476 6.9e-30 101.2 113.0 9 14 0.0028 5.1 8.2 4.3 1 24 699 722 699 722 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 RREB1-201 - 1476 6.9e-30 101.2 113.0 10 14 0.00038 0.67 10.9 0.7 2 23 754 775 753 775 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 RREB1-201 - 1476 6.9e-30 101.2 113.0 11 14 0.0028 5 8.2 2.3 1 24 790 813 790 813 0.97 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 RREB1-201 - 1476 6.9e-30 101.2 113.0 12 14 1.6e-05 0.029 15.2 0.7 2 23 1247 1268 1246 1269 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 RREB1-201 - 1476 6.9e-30 101.2 113.0 13 14 0.0057 10 7.3 3.9 1 24 1274 1297 1274 1297 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 RREB1-201 - 1476 6.9e-30 101.2 113.0 14 14 0.00031 0.56 11.2 2.8 1 23 1329 1351 1329 1352 0.94 C2H2-type zinc finger zf-H2C2_2 PF13465.6 26 RREB1-201 - 1476 1.1e-24 85.7 99.2 1 17 0.027 48 4.6 1.1 13 22 63 73 55 77 0.75 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 RREB1-201 - 1476 1.1e-24 85.7 99.2 2 17 0.8 1.4e+03 -0.0 0.0 14 23 96 105 79 108 0.73 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 RREB1-201 - 1476 1.1e-24 85.7 99.2 3 17 4.6e-10 8.2e-07 29.2 0.1 1 26 111 136 111 136 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 RREB1-201 - 1476 1.1e-24 85.7 99.2 4 17 1.6 2.8e+03 -1.0 0.9 4 11 142 149 139 152 0.84 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 RREB1-201 - 1476 1.1e-24 85.7 99.2 5 17 0.26 4.7e+02 1.5 2.8 15 25 208 218 201 219 0.81 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 RREB1-201 - 1476 1.1e-24 85.7 99.2 6 17 0.0034 6.2 7.4 0.3 2 25 223 245 222 246 0.88 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 RREB1-201 - 1476 1.1e-24 85.7 99.2 7 17 0.027 48 4.6 0.2 14 24 315 325 310 326 0.87 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 RREB1-201 - 1476 1.1e-24 85.7 99.2 8 17 0.12 2.2e+02 2.5 0.1 15 25 643 653 631 653 0.78 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 RREB1-201 - 1476 1.1e-24 85.7 99.2 9 17 1.4e-06 0.0025 18.2 0.0 2 22 658 678 657 680 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 RREB1-201 - 1476 1.1e-24 85.7 99.2 10 17 6e-07 0.0011 19.3 1.0 1 23 685 707 685 709 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 RREB1-201 - 1476 1.1e-24 85.7 99.2 11 17 0.46 8.3e+02 0.7 0.0 2 11 714 724 713 761 0.79 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 RREB1-201 - 1476 1.1e-24 85.7 99.2 12 17 0.00023 0.42 11.1 4.7 8 25 783 800 767 801 0.70 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 RREB1-201 - 1476 1.1e-24 85.7 99.2 13 17 0.11 2e+02 2.7 0.1 15 24 1246 1255 1214 1255 0.85 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 RREB1-201 - 1476 1.1e-24 85.7 99.2 14 17 3.3e-10 6e-07 29.6 0.5 1 26 1260 1285 1260 1285 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 RREB1-201 - 1476 1.1e-24 85.7 99.2 15 17 7.1 1.3e+04 -3.0 0.1 2 9 1289 1297 1288 1301 0.68 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 RREB1-201 - 1476 1.1e-24 85.7 99.2 16 17 0.00019 0.35 11.4 0.6 10 25 1324 1339 1320 1339 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 RREB1-201 - 1476 1.1e-24 85.7 99.2 17 17 1.5 2.7e+03 -0.9 3.0 1 10 1343 1352 1343 1363 0.83 Zinc-finger double domain zf-H2C2_5 PF13909.6 26 RREB1-201 - 1476 1.5e-09 37.4 60.7 1 11 0.00057 1 9.2 0.0 14 26 110 121 105 121 0.90 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 RREB1-201 - 1476 1.5e-09 37.4 60.7 2 11 0.00036 0.65 9.8 2.2 1 26 125 149 125 149 0.91 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 RREB1-201 - 1476 1.5e-09 37.4 60.7 3 11 0.62 1.1e+03 -0.5 0.0 16 25 223 231 220 232 0.87 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 RREB1-201 - 1476 1.5e-09 37.4 60.7 4 11 6.9 1.2e+04 -3.9 0.0 15 24 657 665 653 666 0.81 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 RREB1-201 - 1476 1.5e-09 37.4 60.7 5 11 1.1e-10 2.1e-07 30.6 0.0 1 26 671 695 671 695 0.98 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 RREB1-201 - 1476 1.5e-09 37.4 60.7 6 11 0.024 43 4.0 2.8 7 24 705 722 699 724 0.77 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 RREB1-201 - 1476 1.5e-09 37.4 60.7 7 11 0.45 8.2e+02 -0.1 0.6 14 24 766 775 763 777 0.79 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 RREB1-201 - 1476 1.5e-09 37.4 60.7 8 11 0.28 5.1e+02 0.6 0.9 3 24 792 813 790 814 0.85 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 RREB1-201 - 1476 1.5e-09 37.4 60.7 9 11 1.8e-05 0.032 14.0 0.3 3 26 1248 1270 1247 1270 0.94 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 RREB1-201 - 1476 1.5e-09 37.4 60.7 10 11 0.018 32 4.4 0.3 11 24 1284 1297 1274 1298 0.82 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 RREB1-201 - 1476 1.5e-09 37.4 60.7 11 11 1.7 3.1e+03 -2.0 4.0 1 25 1329 1352 1329 1353 0.85 C2H2-type zinc-finger domain # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/RREB1-201.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/RREB1-201.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/RREB1-201.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/RREB1-201.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/RREB1-201.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:56:32 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-C2H2 PF00096.26 23 RREB1-202 - 1687 2.9e-39 131.3 122.0 1 15 2.7e-05 0.043 14.3 1.7 1 21 66 86 66 87 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 RREB1-202 - 1687 2.9e-39 131.3 122.0 2 15 1.1e-06 0.0018 18.7 0.7 1 23 97 119 97 119 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 RREB1-202 - 1687 2.9e-39 131.3 122.0 3 15 4.3e-08 7.1e-05 23.1 2.6 1 23 125 147 125 147 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 RREB1-202 - 1687 2.9e-39 131.3 122.0 4 15 0.0014 2.3 8.8 3.6 1 23 208 230 208 230 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 RREB1-202 - 1687 2.9e-39 131.3 122.0 5 15 0.22 3.6e+02 1.9 2.2 2 23 236 258 235 258 0.89 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 RREB1-202 - 1687 2.9e-39 131.3 122.0 6 15 7.1e-05 0.12 12.9 1.0 1 23 316 338 316 338 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 RREB1-202 - 1687 2.9e-39 131.3 122.0 7 15 0.00013 0.21 12.1 0.3 1 23 643 665 643 665 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 RREB1-202 - 1687 2.9e-39 131.3 122.0 8 15 9e-06 0.015 15.7 0.0 1 23 671 693 671 693 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 RREB1-202 - 1687 2.9e-39 131.3 122.0 9 15 0.00036 0.59 10.7 4.8 1 23 699 722 699 722 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 RREB1-202 - 1687 2.9e-39 131.3 122.0 10 15 0.00014 0.22 12.0 1.3 2 23 754 775 753 775 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 RREB1-202 - 1687 2.9e-39 131.3 122.0 11 15 0.0047 7.7 7.2 1.7 1 23 790 813 790 813 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 RREB1-202 - 1687 2.9e-39 131.3 122.0 12 15 5.3e-07 0.00086 19.6 0.5 2 23 1247 1268 1246 1268 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 RREB1-202 - 1687 2.9e-39 131.3 122.0 13 15 9e-06 0.015 15.8 0.7 3 23 1395 1415 1393 1415 0.95 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 RREB1-202 - 1687 2.9e-39 131.3 122.0 14 15 1.7e-05 0.027 14.9 1.3 2 23 1513 1534 1512 1534 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 RREB1-202 - 1687 2.9e-39 131.3 122.0 15 15 2.4e-06 0.0039 17.6 4.0 1 23 1540 1562 1540 1562 0.99 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 RREB1-202 - 1687 2.9e-36 121.0 115.7 1 15 0.0022 3.5 8.7 0.9 1 21 66 86 66 88 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 RREB1-202 - 1687 2.9e-36 121.0 115.7 2 15 5.3e-06 0.0087 16.8 1.0 1 23 97 119 97 120 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 RREB1-202 - 1687 2.9e-36 121.0 115.7 3 15 2.2e-07 0.00037 21.1 1.0 1 23 125 147 125 148 0.97 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 RREB1-202 - 1687 2.9e-36 121.0 115.7 4 15 2.1e-06 0.0034 18.1 4.0 1 23 208 230 208 231 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 RREB1-202 - 1687 2.9e-36 121.0 115.7 5 15 0.00077 1.3 10.1 1.6 2 19 236 253 235 258 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 RREB1-202 - 1687 2.9e-36 121.0 115.7 6 15 0.021 34 5.6 1.0 1 23 316 338 316 339 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 RREB1-202 - 1687 2.9e-36 121.0 115.7 7 15 3.8e-05 0.062 14.2 0.4 1 23 643 665 643 666 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 RREB1-202 - 1687 2.9e-36 121.0 115.7 8 15 0.0002 0.33 11.9 0.0 1 23 671 693 671 694 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 RREB1-202 - 1687 2.9e-36 121.0 115.7 9 15 0.0036 5.9 8.0 4.3 1 24 699 722 699 722 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 RREB1-202 - 1687 2.9e-36 121.0 115.7 10 15 0.00048 0.78 10.7 0.7 2 23 754 775 753 775 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 RREB1-202 - 1687 2.9e-36 121.0 115.7 11 15 0.0035 5.7 8.0 2.3 1 24 790 813 790 813 0.97 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 RREB1-202 - 1687 2.9e-36 121.0 115.7 12 15 2e-05 0.033 15.0 0.7 2 23 1247 1268 1246 1269 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 RREB1-202 - 1687 2.9e-36 121.0 115.7 13 15 4.4e-05 0.072 14.0 0.3 2 23 1394 1415 1393 1416 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 RREB1-202 - 1687 2.9e-36 121.0 115.7 14 15 8.5e-07 0.0014 19.3 1.2 2 23 1513 1534 1512 1535 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 RREB1-202 - 1687 2.9e-36 121.0 115.7 15 15 0.0004 0.65 11.0 2.8 1 23 1540 1562 1540 1563 0.94 C2H2-type zinc finger zf-H2C2_2 PF13465.6 26 RREB1-202 - 1687 1.8e-24 85.0 106.2 1 18 0.034 55 4.4 1.1 13 22 63 73 55 77 0.75 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 RREB1-202 - 1687 1.8e-24 85.0 106.2 2 18 1.1 1.7e+03 -0.3 0.0 14 23 96 105 80 108 0.74 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 RREB1-202 - 1687 1.8e-24 85.0 106.2 3 18 5.8e-10 9.5e-07 29.0 0.1 1 26 111 136 111 136 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 RREB1-202 - 1687 1.8e-24 85.0 106.2 4 18 2 3.2e+03 -1.2 0.9 4 11 142 149 139 152 0.84 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 RREB1-202 - 1687 1.8e-24 85.0 106.2 5 18 0.33 5.4e+02 1.3 2.8 15 25 208 218 201 219 0.81 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 RREB1-202 - 1687 1.8e-24 85.0 106.2 6 18 0.0044 7.2 7.2 0.3 2 25 223 245 222 246 0.88 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 RREB1-202 - 1687 1.8e-24 85.0 106.2 7 18 0.034 55 4.4 0.2 14 24 315 325 310 326 0.87 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 RREB1-202 - 1687 1.8e-24 85.0 106.2 8 18 0.15 2.5e+02 2.3 0.1 15 25 643 653 631 653 0.78 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 RREB1-202 - 1687 1.8e-24 85.0 106.2 9 18 1.8e-06 0.0029 18.0 0.0 2 22 658 678 657 680 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 RREB1-202 - 1687 1.8e-24 85.0 106.2 10 18 7.7e-07 0.0013 19.1 1.0 1 23 685 707 685 709 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 RREB1-202 - 1687 1.8e-24 85.0 106.2 11 18 0.59 9.6e+02 0.5 0.0 2 11 714 724 713 761 0.79 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 RREB1-202 - 1687 1.8e-24 85.0 106.2 12 18 0.00031 0.5 10.9 4.8 8 25 783 800 767 801 0.70 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 RREB1-202 - 1687 1.8e-24 85.0 106.2 13 18 0.14 2.3e+02 2.5 0.1 15 24 1246 1255 1214 1255 0.85 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 RREB1-202 - 1687 1.8e-24 85.0 106.2 14 18 0.02 32 5.2 0.2 1 11 1260 1270 1260 1273 0.90 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 RREB1-202 - 1687 1.8e-24 85.0 106.2 15 18 0.03 49 4.6 0.5 12 25 1390 1403 1388 1404 0.85 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 RREB1-202 - 1687 1.8e-24 85.0 106.2 16 18 0.067 1.1e+02 3.5 0.5 16 25 1513 1522 1506 1523 0.84 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 RREB1-202 - 1687 1.8e-24 85.0 106.2 17 18 3.1e-11 5e-08 33.0 1.1 1 25 1526 1550 1526 1550 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 RREB1-202 - 1687 1.8e-24 85.0 106.2 18 18 1.9 3.1e+03 -1.1 3.0 1 10 1554 1563 1554 1574 0.83 Zinc-finger double domain zf-H2C2_5 PF13909.6 26 RREB1-202 - 1687 2.3e-09 36.8 61.3 1 10 0.00072 1.2 9.0 0.0 14 26 110 121 105 121 0.90 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 RREB1-202 - 1687 2.3e-09 36.8 61.3 2 10 0.00046 0.75 9.6 2.2 1 26 125 149 125 149 0.91 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 RREB1-202 - 1687 2.3e-09 36.8 61.3 3 10 0.79 1.3e+03 -0.7 0.0 16 25 223 231 220 232 0.87 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 RREB1-202 - 1687 2.3e-09 36.8 61.3 4 10 1.5e-10 2.4e-07 30.4 0.0 1 26 671 695 671 695 0.98 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 RREB1-202 - 1687 2.3e-09 36.8 61.3 5 10 0.031 50 3.8 2.7 7 24 705 722 699 724 0.77 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 RREB1-202 - 1687 2.3e-09 36.8 61.3 6 10 0.58 9.4e+02 -0.3 0.6 14 24 766 775 763 777 0.79 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 RREB1-202 - 1687 2.3e-09 36.8 61.3 7 10 0.36 5.9e+02 0.4 0.9 3 24 792 813 790 814 0.85 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 RREB1-202 - 1687 2.3e-09 36.8 61.3 8 10 2.2e-05 0.036 13.8 0.3 3 26 1248 1270 1247 1270 0.94 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 RREB1-202 - 1687 2.3e-09 36.8 61.3 9 10 0.0065 11 5.9 0.4 15 26 1526 1536 1525 1536 0.92 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 RREB1-202 - 1687 2.3e-09 36.8 61.3 10 10 2.2 3.6e+03 -2.2 4.0 1 25 1540 1563 1540 1564 0.85 C2H2-type zinc-finger domain zf-C2H2_6 PF13912.6 27 RREB1-202 - 1687 6.1e-09 35.7 101.6 1 16 0.75 1.2e+03 -0.4 0.7 2 20 66 84 65 87 0.72 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 RREB1-202 - 1687 6.1e-09 35.7 101.6 2 16 0.00056 0.92 9.6 0.4 2 21 97 116 96 121 0.89 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 RREB1-202 - 1687 6.1e-09 35.7 101.6 3 16 0.00016 0.26 11.3 1.2 2 26 125 149 125 150 0.95 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 RREB1-202 - 1687 6.1e-09 35.7 101.6 4 16 0.0011 1.8 8.6 2.1 1 25 207 231 207 232 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 RREB1-202 - 1687 6.1e-09 35.7 101.6 5 16 0.083 1.4e+02 2.7 1.0 3 23 236 256 236 260 0.79 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 RREB1-202 - 1687 6.1e-09 35.7 101.6 6 16 4.3e-06 0.0071 16.3 0.3 1 24 315 338 315 340 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 RREB1-202 - 1687 6.1e-09 35.7 101.6 7 16 0.22 3.6e+02 1.3 0.1 2 25 643 666 642 668 0.88 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 RREB1-202 - 1687 6.1e-09 35.7 101.6 8 16 4.5 7.3e+03 -2.8 0.8 2 8 671 677 671 677 0.89 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 RREB1-202 - 1687 6.1e-09 35.7 101.6 9 16 1.2 2e+03 -1.1 0.2 16 25 685 694 685 696 0.86 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 RREB1-202 - 1687 6.1e-09 35.7 101.6 10 16 0.49 8e+02 0.2 0.9 2 8 699 705 699 709 0.89 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 RREB1-202 - 1687 6.1e-09 35.7 101.6 11 16 0.0023 3.8 7.6 0.7 3 24 754 775 752 777 0.95 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 RREB1-202 - 1687 6.1e-09 35.7 101.6 12 16 0.0075 12 6.0 0.6 2 11 790 799 790 800 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 RREB1-202 - 1687 6.1e-09 35.7 101.6 13 16 2.6 4.3e+03 -2.1 0.1 4 24 1248 1268 1247 1269 0.80 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 RREB1-202 - 1687 6.1e-09 35.7 101.6 14 16 0.001 1.7 8.8 1.1 4 24 1395 1415 1394 1418 0.90 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 RREB1-202 - 1687 6.1e-09 35.7 101.6 15 16 2.4e-09 3.9e-06 26.7 0.2 3 24 1513 1534 1513 1537 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 RREB1-202 - 1687 6.1e-09 35.7 101.6 16 16 0.016 27 4.9 0.7 2 12 1540 1550 1540 1564 0.88 C2H2-type zinc finger zf-met PF12874.7 25 RREB1-202 - 1687 1.6e-08 34.6 72.7 1 13 0.00056 0.92 10.0 1.4 1 21 66 86 66 86 0.93 Zinc-finger of C2H2 type zf-met PF12874.7 25 RREB1-202 - 1687 1.6e-08 34.6 72.7 2 13 0.00015 0.25 11.8 0.4 2 20 98 116 97 117 0.95 Zinc-finger of C2H2 type zf-met PF12874.7 25 RREB1-202 - 1687 1.6e-08 34.6 72.7 3 13 0.0017 2.8 8.4 1.1 1 21 125 145 125 147 0.93 Zinc-finger of C2H2 type zf-met PF12874.7 25 RREB1-202 - 1687 1.6e-08 34.6 72.7 4 13 1.8 3e+03 -1.2 1.8 1 20 208 227 208 230 0.79 Zinc-finger of C2H2 type zf-met PF12874.7 25 RREB1-202 - 1687 1.6e-08 34.6 72.7 5 13 0.036 59 4.3 0.4 2 12 236 246 235 254 0.80 Zinc-finger of C2H2 type zf-met PF12874.7 25 RREB1-202 - 1687 1.6e-08 34.6 72.7 6 13 0.17 2.8e+02 2.1 0.5 1 21 316 336 316 339 0.77 Zinc-finger of C2H2 type zf-met PF12874.7 25 RREB1-202 - 1687 1.6e-08 34.6 72.7 7 13 0.0013 2.1 8.8 0.1 3 23 645 665 642 666 0.92 Zinc-finger of C2H2 type zf-met PF12874.7 25 RREB1-202 - 1687 1.6e-08 34.6 72.7 8 13 0.0009 1.5 9.3 0.1 1 21 671 691 671 693 0.94 Zinc-finger of C2H2 type zf-met PF12874.7 25 RREB1-202 - 1687 1.6e-08 34.6 72.7 9 13 0.23 3.7e+02 1.7 2.3 1 21 699 719 699 722 0.88 Zinc-finger of C2H2 type zf-met PF12874.7 25 RREB1-202 - 1687 1.6e-08 34.6 72.7 10 13 3.5 5.7e+03 -2.1 0.0 2 20 1247 1265 1246 1267 0.86 Zinc-finger of C2H2 type zf-met PF12874.7 25 RREB1-202 - 1687 1.6e-08 34.6 72.7 11 13 0.032 52 4.4 0.0 3 19 1395 1411 1393 1414 0.92 Zinc-finger of C2H2 type zf-met PF12874.7 25 RREB1-202 - 1687 1.6e-08 34.6 72.7 12 13 6.4e-06 0.01 16.2 0.6 2 23 1513 1534 1512 1535 0.94 Zinc-finger of C2H2 type zf-met PF12874.7 25 RREB1-202 - 1687 1.6e-08 34.6 72.7 13 13 0.13 2e+02 2.5 0.2 1 11 1540 1550 1540 1562 0.88 Zinc-finger of C2H2 type # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/RREB1-202.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/RREB1-202.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/RREB1-202.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/RREB1-202.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/RREB1-202.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:56:32 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-C2H2 PF00096.26 23 RREB1-203 - 1687 2.9e-39 131.3 122.0 1 15 2.7e-05 0.043 14.3 1.7 1 21 66 86 66 87 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 RREB1-203 - 1687 2.9e-39 131.3 122.0 2 15 1.1e-06 0.0018 18.7 0.7 1 23 97 119 97 119 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 RREB1-203 - 1687 2.9e-39 131.3 122.0 3 15 4.3e-08 7.1e-05 23.1 2.6 1 23 125 147 125 147 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 RREB1-203 - 1687 2.9e-39 131.3 122.0 4 15 0.0014 2.3 8.8 3.6 1 23 208 230 208 230 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 RREB1-203 - 1687 2.9e-39 131.3 122.0 5 15 0.22 3.6e+02 1.9 2.2 2 23 236 258 235 258 0.89 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 RREB1-203 - 1687 2.9e-39 131.3 122.0 6 15 7.1e-05 0.12 12.9 1.0 1 23 316 338 316 338 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 RREB1-203 - 1687 2.9e-39 131.3 122.0 7 15 0.00013 0.21 12.1 0.3 1 23 643 665 643 665 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 RREB1-203 - 1687 2.9e-39 131.3 122.0 8 15 9e-06 0.015 15.7 0.0 1 23 671 693 671 693 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 RREB1-203 - 1687 2.9e-39 131.3 122.0 9 15 0.00036 0.59 10.7 4.8 1 23 699 722 699 722 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 RREB1-203 - 1687 2.9e-39 131.3 122.0 10 15 0.00014 0.22 12.0 1.3 2 23 754 775 753 775 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 RREB1-203 - 1687 2.9e-39 131.3 122.0 11 15 0.0047 7.7 7.2 1.7 1 23 790 813 790 813 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 RREB1-203 - 1687 2.9e-39 131.3 122.0 12 15 5.3e-07 0.00086 19.6 0.5 2 23 1247 1268 1246 1268 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 RREB1-203 - 1687 2.9e-39 131.3 122.0 13 15 9e-06 0.015 15.8 0.7 3 23 1395 1415 1393 1415 0.95 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 RREB1-203 - 1687 2.9e-39 131.3 122.0 14 15 1.7e-05 0.027 14.9 1.3 2 23 1513 1534 1512 1534 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 RREB1-203 - 1687 2.9e-39 131.3 122.0 15 15 2.4e-06 0.0039 17.6 4.0 1 23 1540 1562 1540 1562 0.99 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 RREB1-203 - 1687 2.9e-36 121.0 115.7 1 15 0.0022 3.5 8.7 0.9 1 21 66 86 66 88 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 RREB1-203 - 1687 2.9e-36 121.0 115.7 2 15 5.3e-06 0.0087 16.8 1.0 1 23 97 119 97 120 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 RREB1-203 - 1687 2.9e-36 121.0 115.7 3 15 2.2e-07 0.00037 21.1 1.0 1 23 125 147 125 148 0.97 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 RREB1-203 - 1687 2.9e-36 121.0 115.7 4 15 2.1e-06 0.0034 18.1 4.0 1 23 208 230 208 231 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 RREB1-203 - 1687 2.9e-36 121.0 115.7 5 15 0.00077 1.3 10.1 1.6 2 19 236 253 235 258 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 RREB1-203 - 1687 2.9e-36 121.0 115.7 6 15 0.021 34 5.6 1.0 1 23 316 338 316 339 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 RREB1-203 - 1687 2.9e-36 121.0 115.7 7 15 3.8e-05 0.062 14.2 0.4 1 23 643 665 643 666 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 RREB1-203 - 1687 2.9e-36 121.0 115.7 8 15 0.0002 0.33 11.9 0.0 1 23 671 693 671 694 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 RREB1-203 - 1687 2.9e-36 121.0 115.7 9 15 0.0036 5.9 8.0 4.3 1 24 699 722 699 722 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 RREB1-203 - 1687 2.9e-36 121.0 115.7 10 15 0.00048 0.78 10.7 0.7 2 23 754 775 753 775 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 RREB1-203 - 1687 2.9e-36 121.0 115.7 11 15 0.0035 5.7 8.0 2.3 1 24 790 813 790 813 0.97 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 RREB1-203 - 1687 2.9e-36 121.0 115.7 12 15 2e-05 0.033 15.0 0.7 2 23 1247 1268 1246 1269 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 RREB1-203 - 1687 2.9e-36 121.0 115.7 13 15 4.4e-05 0.072 14.0 0.3 2 23 1394 1415 1393 1416 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 RREB1-203 - 1687 2.9e-36 121.0 115.7 14 15 8.5e-07 0.0014 19.3 1.2 2 23 1513 1534 1512 1535 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 RREB1-203 - 1687 2.9e-36 121.0 115.7 15 15 0.0004 0.65 11.0 2.8 1 23 1540 1562 1540 1563 0.94 C2H2-type zinc finger zf-H2C2_2 PF13465.6 26 RREB1-203 - 1687 1.8e-24 85.0 106.2 1 18 0.034 55 4.4 1.1 13 22 63 73 55 77 0.75 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 RREB1-203 - 1687 1.8e-24 85.0 106.2 2 18 1.1 1.7e+03 -0.3 0.0 14 23 96 105 80 108 0.74 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 RREB1-203 - 1687 1.8e-24 85.0 106.2 3 18 5.8e-10 9.5e-07 29.0 0.1 1 26 111 136 111 136 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 RREB1-203 - 1687 1.8e-24 85.0 106.2 4 18 2 3.2e+03 -1.2 0.9 4 11 142 149 139 152 0.84 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 RREB1-203 - 1687 1.8e-24 85.0 106.2 5 18 0.33 5.4e+02 1.3 2.8 15 25 208 218 201 219 0.81 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 RREB1-203 - 1687 1.8e-24 85.0 106.2 6 18 0.0044 7.2 7.2 0.3 2 25 223 245 222 246 0.88 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 RREB1-203 - 1687 1.8e-24 85.0 106.2 7 18 0.034 55 4.4 0.2 14 24 315 325 310 326 0.87 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 RREB1-203 - 1687 1.8e-24 85.0 106.2 8 18 0.15 2.5e+02 2.3 0.1 15 25 643 653 631 653 0.78 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 RREB1-203 - 1687 1.8e-24 85.0 106.2 9 18 1.8e-06 0.0029 18.0 0.0 2 22 658 678 657 680 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 RREB1-203 - 1687 1.8e-24 85.0 106.2 10 18 7.7e-07 0.0013 19.1 1.0 1 23 685 707 685 709 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 RREB1-203 - 1687 1.8e-24 85.0 106.2 11 18 0.59 9.6e+02 0.5 0.0 2 11 714 724 713 761 0.79 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 RREB1-203 - 1687 1.8e-24 85.0 106.2 12 18 0.00031 0.5 10.9 4.8 8 25 783 800 767 801 0.70 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 RREB1-203 - 1687 1.8e-24 85.0 106.2 13 18 0.14 2.3e+02 2.5 0.1 15 24 1246 1255 1214 1255 0.85 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 RREB1-203 - 1687 1.8e-24 85.0 106.2 14 18 0.02 32 5.2 0.2 1 11 1260 1270 1260 1273 0.90 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 RREB1-203 - 1687 1.8e-24 85.0 106.2 15 18 0.03 49 4.6 0.5 12 25 1390 1403 1388 1404 0.85 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 RREB1-203 - 1687 1.8e-24 85.0 106.2 16 18 0.067 1.1e+02 3.5 0.5 16 25 1513 1522 1506 1523 0.84 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 RREB1-203 - 1687 1.8e-24 85.0 106.2 17 18 3.1e-11 5e-08 33.0 1.1 1 25 1526 1550 1526 1550 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 RREB1-203 - 1687 1.8e-24 85.0 106.2 18 18 1.9 3.1e+03 -1.1 3.0 1 10 1554 1563 1554 1574 0.83 Zinc-finger double domain zf-H2C2_5 PF13909.6 26 RREB1-203 - 1687 2.3e-09 36.8 61.3 1 10 0.00072 1.2 9.0 0.0 14 26 110 121 105 121 0.90 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 RREB1-203 - 1687 2.3e-09 36.8 61.3 2 10 0.00046 0.75 9.6 2.2 1 26 125 149 125 149 0.91 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 RREB1-203 - 1687 2.3e-09 36.8 61.3 3 10 0.79 1.3e+03 -0.7 0.0 16 25 223 231 220 232 0.87 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 RREB1-203 - 1687 2.3e-09 36.8 61.3 4 10 1.5e-10 2.4e-07 30.4 0.0 1 26 671 695 671 695 0.98 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 RREB1-203 - 1687 2.3e-09 36.8 61.3 5 10 0.031 50 3.8 2.7 7 24 705 722 699 724 0.77 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 RREB1-203 - 1687 2.3e-09 36.8 61.3 6 10 0.58 9.4e+02 -0.3 0.6 14 24 766 775 763 777 0.79 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 RREB1-203 - 1687 2.3e-09 36.8 61.3 7 10 0.36 5.9e+02 0.4 0.9 3 24 792 813 790 814 0.85 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 RREB1-203 - 1687 2.3e-09 36.8 61.3 8 10 2.2e-05 0.036 13.8 0.3 3 26 1248 1270 1247 1270 0.94 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 RREB1-203 - 1687 2.3e-09 36.8 61.3 9 10 0.0065 11 5.9 0.4 15 26 1526 1536 1525 1536 0.92 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 RREB1-203 - 1687 2.3e-09 36.8 61.3 10 10 2.2 3.6e+03 -2.2 4.0 1 25 1540 1563 1540 1564 0.85 C2H2-type zinc-finger domain zf-C2H2_6 PF13912.6 27 RREB1-203 - 1687 6.1e-09 35.7 101.6 1 16 0.75 1.2e+03 -0.4 0.7 2 20 66 84 65 87 0.72 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 RREB1-203 - 1687 6.1e-09 35.7 101.6 2 16 0.00056 0.92 9.6 0.4 2 21 97 116 96 121 0.89 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 RREB1-203 - 1687 6.1e-09 35.7 101.6 3 16 0.00016 0.26 11.3 1.2 2 26 125 149 125 150 0.95 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 RREB1-203 - 1687 6.1e-09 35.7 101.6 4 16 0.0011 1.8 8.6 2.1 1 25 207 231 207 232 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 RREB1-203 - 1687 6.1e-09 35.7 101.6 5 16 0.083 1.4e+02 2.7 1.0 3 23 236 256 236 260 0.79 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 RREB1-203 - 1687 6.1e-09 35.7 101.6 6 16 4.3e-06 0.0071 16.3 0.3 1 24 315 338 315 340 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 RREB1-203 - 1687 6.1e-09 35.7 101.6 7 16 0.22 3.6e+02 1.3 0.1 2 25 643 666 642 668 0.88 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 RREB1-203 - 1687 6.1e-09 35.7 101.6 8 16 4.5 7.3e+03 -2.8 0.8 2 8 671 677 671 677 0.89 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 RREB1-203 - 1687 6.1e-09 35.7 101.6 9 16 1.2 2e+03 -1.1 0.2 16 25 685 694 685 696 0.86 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 RREB1-203 - 1687 6.1e-09 35.7 101.6 10 16 0.49 8e+02 0.2 0.9 2 8 699 705 699 709 0.89 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 RREB1-203 - 1687 6.1e-09 35.7 101.6 11 16 0.0023 3.8 7.6 0.7 3 24 754 775 752 777 0.95 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 RREB1-203 - 1687 6.1e-09 35.7 101.6 12 16 0.0075 12 6.0 0.6 2 11 790 799 790 800 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 RREB1-203 - 1687 6.1e-09 35.7 101.6 13 16 2.6 4.3e+03 -2.1 0.1 4 24 1248 1268 1247 1269 0.80 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 RREB1-203 - 1687 6.1e-09 35.7 101.6 14 16 0.001 1.7 8.8 1.1 4 24 1395 1415 1394 1418 0.90 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 RREB1-203 - 1687 6.1e-09 35.7 101.6 15 16 2.4e-09 3.9e-06 26.7 0.2 3 24 1513 1534 1513 1537 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 RREB1-203 - 1687 6.1e-09 35.7 101.6 16 16 0.016 27 4.9 0.7 2 12 1540 1550 1540 1564 0.88 C2H2-type zinc finger zf-met PF12874.7 25 RREB1-203 - 1687 1.6e-08 34.6 72.7 1 13 0.00056 0.92 10.0 1.4 1 21 66 86 66 86 0.93 Zinc-finger of C2H2 type zf-met PF12874.7 25 RREB1-203 - 1687 1.6e-08 34.6 72.7 2 13 0.00015 0.25 11.8 0.4 2 20 98 116 97 117 0.95 Zinc-finger of C2H2 type zf-met PF12874.7 25 RREB1-203 - 1687 1.6e-08 34.6 72.7 3 13 0.0017 2.8 8.4 1.1 1 21 125 145 125 147 0.93 Zinc-finger of C2H2 type zf-met PF12874.7 25 RREB1-203 - 1687 1.6e-08 34.6 72.7 4 13 1.8 3e+03 -1.2 1.8 1 20 208 227 208 230 0.79 Zinc-finger of C2H2 type zf-met PF12874.7 25 RREB1-203 - 1687 1.6e-08 34.6 72.7 5 13 0.036 59 4.3 0.4 2 12 236 246 235 254 0.80 Zinc-finger of C2H2 type zf-met PF12874.7 25 RREB1-203 - 1687 1.6e-08 34.6 72.7 6 13 0.17 2.8e+02 2.1 0.5 1 21 316 336 316 339 0.77 Zinc-finger of C2H2 type zf-met PF12874.7 25 RREB1-203 - 1687 1.6e-08 34.6 72.7 7 13 0.0013 2.1 8.8 0.1 3 23 645 665 642 666 0.92 Zinc-finger of C2H2 type zf-met PF12874.7 25 RREB1-203 - 1687 1.6e-08 34.6 72.7 8 13 0.0009 1.5 9.3 0.1 1 21 671 691 671 693 0.94 Zinc-finger of C2H2 type zf-met PF12874.7 25 RREB1-203 - 1687 1.6e-08 34.6 72.7 9 13 0.23 3.7e+02 1.7 2.3 1 21 699 719 699 722 0.88 Zinc-finger of C2H2 type zf-met PF12874.7 25 RREB1-203 - 1687 1.6e-08 34.6 72.7 10 13 3.5 5.7e+03 -2.1 0.0 2 20 1247 1265 1246 1267 0.86 Zinc-finger of C2H2 type zf-met PF12874.7 25 RREB1-203 - 1687 1.6e-08 34.6 72.7 11 13 0.032 52 4.4 0.0 3 19 1395 1411 1393 1414 0.92 Zinc-finger of C2H2 type zf-met PF12874.7 25 RREB1-203 - 1687 1.6e-08 34.6 72.7 12 13 6.4e-06 0.01 16.2 0.6 2 23 1513 1534 1512 1535 0.94 Zinc-finger of C2H2 type zf-met PF12874.7 25 RREB1-203 - 1687 1.6e-08 34.6 72.7 13 13 0.13 2e+02 2.5 0.2 1 11 1540 1550 1540 1562 0.88 Zinc-finger of C2H2 type # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/RREB1-203.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/RREB1-203.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/RREB1-203.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/RREB1-203.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/RREB1-203.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:56:33 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-C2H2 PF00096.26 23 RREB1-204 - 1742 1.7e-40 135.3 134.0 1 16 2.2e-05 0.045 14.2 1.7 1 21 66 86 66 87 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 RREB1-204 - 1742 1.7e-40 135.3 134.0 2 16 9.1e-07 0.0018 18.6 0.7 1 23 97 119 97 119 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 RREB1-204 - 1742 1.7e-40 135.3 134.0 3 16 3.7e-08 7.3e-05 23.0 2.6 1 23 125 147 125 147 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 RREB1-204 - 1742 1.7e-40 135.3 134.0 4 16 0.0012 2.4 8.8 3.6 1 23 208 230 208 230 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 RREB1-204 - 1742 1.7e-40 135.3 134.0 5 16 0.19 3.7e+02 1.9 2.2 2 23 236 258 235 258 0.89 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 RREB1-204 - 1742 1.7e-40 135.3 134.0 6 16 6e-05 0.12 12.9 1.0 1 23 316 338 316 338 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 RREB1-204 - 1742 1.7e-40 135.3 134.0 7 16 0.00011 0.22 12.0 0.3 1 23 643 665 643 665 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 RREB1-204 - 1742 1.7e-40 135.3 134.0 8 16 7.7e-06 0.015 15.7 0.0 1 23 671 693 671 693 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 RREB1-204 - 1742 1.7e-40 135.3 134.0 9 16 0.00031 0.62 10.6 4.8 1 23 699 722 699 722 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 RREB1-204 - 1742 1.7e-40 135.3 134.0 10 16 0.00012 0.23 12.0 1.3 2 23 754 775 753 775 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 RREB1-204 - 1742 1.7e-40 135.3 134.0 11 16 0.004 7.9 7.1 1.7 1 23 790 813 790 813 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 RREB1-204 - 1742 1.7e-40 135.3 134.0 12 16 4.5e-07 0.00089 19.6 0.5 2 23 1247 1268 1246 1268 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 RREB1-204 - 1742 1.7e-40 135.3 134.0 13 16 0.00022 0.44 11.1 4.0 1 23 1274 1297 1274 1297 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 RREB1-204 - 1742 1.7e-40 135.3 134.0 14 16 7.6e-06 0.015 15.7 0.7 3 23 1450 1470 1448 1470 0.95 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 RREB1-204 - 1742 1.7e-40 135.3 134.0 15 16 1.4e-05 0.028 14.9 1.3 2 23 1568 1589 1567 1589 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 RREB1-204 - 1742 1.7e-40 135.3 134.0 16 16 2e-06 0.0041 17.5 4.0 1 23 1595 1617 1595 1617 0.99 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 RREB1-204 - 1742 3.2e-36 120.9 127.4 1 16 0.0018 3.6 8.7 0.9 1 21 66 86 66 88 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 RREB1-204 - 1742 3.2e-36 120.9 127.4 2 16 4.5e-06 0.009 16.8 1.0 1 23 97 119 97 120 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 RREB1-204 - 1742 3.2e-36 120.9 127.4 3 16 1.9e-07 0.00038 21.1 1.0 1 23 125 147 125 148 0.97 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 RREB1-204 - 1742 3.2e-36 120.9 127.4 4 16 1.7e-06 0.0035 18.1 4.0 1 23 208 230 208 231 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 RREB1-204 - 1742 3.2e-36 120.9 127.4 5 16 0.00066 1.3 10.0 1.6 2 19 236 253 235 258 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 RREB1-204 - 1742 3.2e-36 120.9 127.4 6 16 0.018 35 5.6 1.0 1 23 316 338 316 339 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 RREB1-204 - 1742 3.2e-36 120.9 127.4 7 16 3.2e-05 0.064 14.1 0.4 1 23 643 665 643 666 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 RREB1-204 - 1742 3.2e-36 120.9 127.4 8 16 0.00017 0.34 11.9 0.0 1 23 671 693 671 694 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 RREB1-204 - 1742 3.2e-36 120.9 127.4 9 16 0.0031 6.1 8.0 4.3 1 24 699 722 699 722 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 RREB1-204 - 1742 3.2e-36 120.9 127.4 10 16 0.00041 0.81 10.7 0.7 2 23 754 775 753 775 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 RREB1-204 - 1742 3.2e-36 120.9 127.4 11 16 0.003 6 8.0 2.3 1 24 790 813 790 813 0.97 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 RREB1-204 - 1742 3.2e-36 120.9 127.4 12 16 1.7e-05 0.034 15.0 0.7 2 23 1247 1268 1246 1269 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 RREB1-204 - 1742 3.2e-36 120.9 127.4 13 16 0.0061 12 7.0 3.9 1 24 1274 1297 1274 1297 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 RREB1-204 - 1742 3.2e-36 120.9 127.4 14 16 3.7e-05 0.074 13.9 0.3 2 23 1449 1470 1448 1471 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 RREB1-204 - 1742 3.2e-36 120.9 127.4 15 16 7.2e-07 0.0014 19.3 1.2 2 23 1568 1589 1567 1590 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 RREB1-204 - 1742 3.2e-36 120.9 127.4 16 16 0.00034 0.67 10.9 2.8 1 23 1595 1617 1595 1618 0.94 C2H2-type zinc finger zf-H2C2_2 PF13465.6 26 RREB1-204 - 1742 3.8e-30 102.9 112.4 1 19 0.029 57 4.4 1.1 13 22 63 73 55 77 0.75 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 RREB1-204 - 1742 3.8e-30 102.9 112.4 2 19 0.9 1.8e+03 -0.3 0.0 14 23 96 105 80 108 0.74 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 RREB1-204 - 1742 3.8e-30 102.9 112.4 3 19 4.9e-10 9.8e-07 28.9 0.1 1 26 111 136 111 136 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 RREB1-204 - 1742 3.8e-30 102.9 112.4 4 19 1.7 3.3e+03 -1.2 0.9 4 11 142 149 139 152 0.84 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 RREB1-204 - 1742 3.8e-30 102.9 112.4 5 19 0.28 5.6e+02 1.3 2.8 15 25 208 218 201 219 0.81 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 RREB1-204 - 1742 3.8e-30 102.9 112.4 6 19 0.0037 7.4 7.2 0.3 2 25 223 245 222 246 0.88 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 RREB1-204 - 1742 3.8e-30 102.9 112.4 7 19 0.029 57 4.4 0.2 14 24 315 325 310 326 0.87 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 RREB1-204 - 1742 3.8e-30 102.9 112.4 8 19 0.13 2.6e+02 2.3 0.1 15 25 643 653 631 653 0.78 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 RREB1-204 - 1742 3.8e-30 102.9 112.4 9 19 1.5e-06 0.003 17.9 0.0 2 22 658 678 657 680 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 RREB1-204 - 1742 3.8e-30 102.9 112.4 10 19 6.5e-07 0.0013 19.1 1.0 1 23 685 707 685 709 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 RREB1-204 - 1742 3.8e-30 102.9 112.4 11 19 0.5 9.9e+02 0.5 0.0 2 11 714 724 713 761 0.79 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 RREB1-204 - 1742 3.8e-30 102.9 112.4 12 19 0.00024 0.47 11.0 4.6 8 25 783 800 767 801 0.70 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 RREB1-204 - 1742 3.8e-30 102.9 112.4 13 19 0.12 2.3e+02 2.4 0.1 15 24 1246 1255 1214 1255 0.85 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 RREB1-204 - 1742 3.8e-30 102.9 112.4 14 19 3.6e-10 7.2e-07 29.4 0.5 1 26 1260 1285 1260 1285 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 RREB1-204 - 1742 3.8e-30 102.9 112.4 15 19 7.6 1.5e+04 -3.3 0.1 2 9 1289 1297 1288 1301 0.68 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 RREB1-204 - 1742 3.8e-30 102.9 112.4 16 19 0.026 51 4.5 0.5 12 25 1445 1458 1443 1459 0.85 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 RREB1-204 - 1742 3.8e-30 102.9 112.4 17 19 0.057 1.1e+02 3.4 0.5 16 25 1568 1577 1561 1578 0.84 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 RREB1-204 - 1742 3.8e-30 102.9 112.4 18 19 2.6e-11 5.2e-08 33.0 1.1 1 25 1581 1605 1581 1605 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 RREB1-204 - 1742 3.8e-30 102.9 112.4 19 19 1.6 3.2e+03 -1.1 3.0 1 10 1609 1618 1609 1629 0.83 Zinc-finger double domain zf-H2C2_5 PF13909.6 26 RREB1-204 - 1742 3.2e-09 36.4 67.3 1 12 0.00061 1.2 8.9 0.0 14 26 110 121 105 121 0.90 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 RREB1-204 - 1742 3.2e-09 36.4 67.3 2 12 0.00039 0.78 9.6 2.2 1 26 125 149 125 149 0.91 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 RREB1-204 - 1742 3.2e-09 36.4 67.3 3 12 0.67 1.3e+03 -0.8 0.0 16 25 223 231 220 232 0.87 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 RREB1-204 - 1742 3.2e-09 36.4 67.3 4 12 8.7 1.7e+04 -4.3 0.0 15 24 657 665 654 665 0.80 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 RREB1-204 - 1742 3.2e-09 36.4 67.3 5 12 1.2e-10 2.5e-07 30.3 0.0 1 26 671 695 671 695 0.98 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 RREB1-204 - 1742 3.2e-09 36.4 67.3 6 12 0.026 52 3.7 2.7 7 24 705 722 699 724 0.77 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 RREB1-204 - 1742 3.2e-09 36.4 67.3 7 12 0.49 9.7e+02 -0.3 0.6 14 24 766 775 763 777 0.79 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 RREB1-204 - 1742 3.2e-09 36.4 67.3 8 12 0.31 6.1e+02 0.3 0.9 3 24 792 813 790 814 0.85 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 RREB1-204 - 1742 3.2e-09 36.4 67.3 9 12 1.9e-05 0.038 13.8 0.3 3 26 1248 1270 1247 1270 0.94 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 RREB1-204 - 1742 3.2e-09 36.4 67.3 10 12 0.019 38 4.2 0.3 11 24 1284 1297 1274 1298 0.82 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 RREB1-204 - 1742 3.2e-09 36.4 67.3 11 12 0.0055 11 5.9 0.4 15 26 1581 1591 1580 1591 0.92 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 RREB1-204 - 1742 3.2e-09 36.4 67.3 12 12 1.9 3.7e+03 -2.2 4.0 1 25 1595 1618 1595 1619 0.85 C2H2-type zinc-finger domain zf-C2H2_6 PF13912.6 27 RREB1-204 - 1742 8.1e-08 32.1 3.5 1 17 0.63 1.3e+03 -0.4 0.7 2 20 66 84 65 87 0.72 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 RREB1-204 - 1742 8.1e-08 32.1 3.5 2 17 0.00048 0.95 9.5 0.4 2 21 97 116 96 121 0.89 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 RREB1-204 - 1742 8.1e-08 32.1 3.5 3 17 0.00013 0.27 11.3 1.2 2 26 125 149 125 150 0.95 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 RREB1-204 - 1742 8.1e-08 32.1 3.5 4 17 0.00096 1.9 8.6 2.1 1 25 207 231 207 232 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 RREB1-204 - 1742 8.1e-08 32.1 3.5 5 17 0.071 1.4e+02 2.6 1.0 3 23 236 256 236 260 0.79 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 RREB1-204 - 1742 8.1e-08 32.1 3.5 6 17 3.7e-06 0.0073 16.3 0.3 1 24 315 338 315 340 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 RREB1-204 - 1742 8.1e-08 32.1 3.5 7 17 0.19 3.7e+02 1.3 0.1 2 25 643 666 642 668 0.88 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 RREB1-204 - 1742 8.1e-08 32.1 3.5 8 17 3.8 7.5e+03 -2.9 0.8 2 8 671 677 671 677 0.89 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 RREB1-204 - 1742 8.1e-08 32.1 3.5 9 17 1.1 2.1e+03 -1.1 0.2 16 25 685 694 685 696 0.86 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 RREB1-204 - 1742 8.1e-08 32.1 3.5 10 17 0.42 8.3e+02 0.2 0.9 2 8 699 705 699 709 0.89 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 RREB1-204 - 1742 8.1e-08 32.1 3.5 11 17 0.002 3.9 7.6 0.7 3 24 754 775 752 777 0.95 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 RREB1-204 - 1742 8.1e-08 32.1 3.5 12 17 0.0064 13 5.9 0.6 2 11 790 799 790 800 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 RREB1-204 - 1742 8.1e-08 32.1 3.5 13 17 2.2 4.4e+03 -2.2 0.1 4 24 1248 1268 1247 1269 0.80 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 RREB1-204 - 1742 8.1e-08 32.1 3.5 14 17 0.54 1.1e+03 -0.2 1.0 2 13 1274 1285 1274 1285 0.89 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 RREB1-204 - 1742 8.1e-08 32.1 3.5 15 17 0.00086 1.7 8.7 1.1 4 24 1450 1470 1449 1473 0.90 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 RREB1-204 - 1742 8.1e-08 32.1 3.5 16 17 2e-09 4.1e-06 26.7 0.2 3 24 1568 1589 1568 1592 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 RREB1-204 - 1742 8.1e-08 32.1 3.5 17 17 0.014 28 4.9 0.7 2 12 1595 1605 1595 1619 0.88 C2H2-type zinc finger # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/RREB1-204.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/RREB1-204.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/RREB1-204.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/RREB1-204.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/RREB1-204.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:56:33 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/RREB1-205.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/RREB1-205.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/RREB1-205.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/RREB1-205.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/RREB1-205.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:56:34 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/RREB1-206.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/RREB1-206.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/RREB1-206.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/RREB1-206.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/RREB1-206.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:56:34 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-C2H2_4 PF13894.6 24 RREB1-207 - 236 2.8e-17 61.9 27.8 1 4 0.0005 0.33 11.9 0.9 1 21 66 86 66 88 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 RREB1-207 - 236 2.8e-17 61.9 27.8 2 4 1.2e-06 0.00082 20.0 1.0 1 23 97 119 97 120 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 RREB1-207 - 236 2.8e-17 61.9 27.8 3 4 5.1e-08 3.4e-05 24.3 1.0 1 23 125 147 125 148 0.97 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 RREB1-207 - 236 2.8e-17 61.9 27.8 4 4 4.7e-07 0.00031 21.3 4.0 1 23 208 230 208 231 0.96 C2H2-type zinc finger zf-C2H2 PF00096.26 23 RREB1-207 - 236 8.2e-17 60.7 30.5 1 4 6.4e-06 0.0042 17.5 1.7 1 21 66 86 66 87 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 RREB1-207 - 236 8.2e-17 60.7 30.5 2 4 2.6e-07 0.00017 21.9 0.7 1 23 97 119 97 119 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 RREB1-207 - 236 8.2e-17 60.7 30.5 3 4 1e-08 6.8e-06 26.2 2.6 1 23 125 147 125 147 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 RREB1-207 - 236 8.2e-17 60.7 30.5 4 4 0.00034 0.23 12.0 3.6 1 23 208 230 208 230 0.97 Zinc finger, C2H2 type zf-H2C2_2 PF13465.6 26 RREB1-207 - 236 1e-08 35.2 26.9 1 6 0.0087 5.8 7.5 1.1 13 22 63 73 55 77 0.74 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 RREB1-207 - 236 1e-08 35.2 26.9 2 6 0.23 1.6e+02 3.0 0.0 14 23 96 105 78 108 0.71 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 RREB1-207 - 236 1e-08 35.2 26.9 3 6 1.4e-10 9e-08 32.2 0.1 1 26 111 136 111 136 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 RREB1-207 - 236 1e-08 35.2 26.9 4 6 0.47 3.1e+02 2.1 0.7 4 11 142 149 139 153 0.85 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 RREB1-207 - 236 1e-08 35.2 26.9 5 6 0.087 58 4.4 2.8 15 25 208 218 201 219 0.80 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 RREB1-207 - 236 1e-08 35.2 26.9 6 6 4.3 2.8e+03 -1.0 0.0 2 10 223 231 222 234 0.83 Zinc-finger double domain # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/RREB1-207.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/RREB1-207.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/RREB1-207.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/RREB1-207.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/RREB1-207.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:56:34 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/RREB1-208.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/RREB1-208.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/RREB1-208.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/RREB1-208.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/RREB1-208.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:56:35 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/RREB1-209.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/RREB1-209.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/RREB1-209.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/RREB1-209.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/RREB1-209.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:56:35 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-C2H2 PF00096.26 23 RREB1-210 - 755 5.6e-16 58.0 26.5 1 4 4.7e-07 0.00035 20.9 0.5 2 23 316 337 315 337 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 RREB1-210 - 755 5.6e-16 58.0 26.5 2 4 8e-06 0.006 17.0 0.6 3 23 463 483 461 483 0.95 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 RREB1-210 - 755 5.6e-16 58.0 26.5 3 4 1.5e-05 0.011 16.1 1.3 2 23 581 602 580 602 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 RREB1-210 - 755 5.6e-16 58.0 26.5 4 4 2.1e-06 0.0016 18.8 4.0 1 23 608 630 608 630 0.99 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 RREB1-210 - 755 1.4e-13 50.4 24.2 1 4 1.8e-05 0.013 16.2 0.7 2 23 316 337 315 338 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 RREB1-210 - 755 1.4e-13 50.4 24.2 2 4 3.9e-05 0.029 15.2 0.3 2 23 462 483 461 484 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 RREB1-210 - 755 1.4e-13 50.4 24.2 3 4 7.4e-07 0.00056 20.5 1.2 2 23 581 602 580 603 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 RREB1-210 - 755 1.4e-13 50.4 24.2 4 4 0.00035 0.26 12.2 2.8 1 23 608 630 608 631 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 RREB1-210 - 755 2e-08 34.0 17.5 1 4 2.4 1.8e+03 -0.9 0.1 4 24 317 337 316 338 0.80 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 RREB1-210 - 755 2e-08 34.0 17.5 2 4 0.00091 0.68 10.0 1.1 4 24 463 483 462 486 0.90 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 RREB1-210 - 755 2e-08 34.0 17.5 3 4 2.2e-09 1.6e-06 27.9 0.2 3 24 581 602 581 605 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 RREB1-210 - 755 2e-08 34.0 17.5 4 4 0.015 11 6.1 0.7 2 12 608 618 608 632 0.88 C2H2-type zinc finger zf-H2C2_2 PF13465.6 26 RREB1-210 - 755 2e-08 34.3 1.1 1 6 0.12 92 3.7 0.1 15 24 315 324 283 324 0.85 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 RREB1-210 - 755 2e-08 34.3 1.1 2 6 0.018 13 6.4 0.2 1 11 329 339 329 342 0.90 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 RREB1-210 - 755 2e-08 34.3 1.1 3 6 0.027 21 5.8 0.5 12 25 458 471 456 472 0.85 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 RREB1-210 - 755 2e-08 34.3 1.1 4 6 0.061 46 4.7 0.5 16 25 581 590 574 591 0.84 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 RREB1-210 - 755 2e-08 34.3 1.1 5 6 2.7e-11 2e-08 34.3 1.1 1 25 594 618 594 618 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 RREB1-210 - 755 2e-08 34.3 1.1 6 6 3.5 2.6e+03 -0.9 4.0 1 10 622 631 622 643 0.83 Zinc-finger double domain # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/RREB1-210.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/RREB1-210.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/RREB1-210.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/RREB1-210.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/RREB1-210.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:56:35 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-C2H2_4 PF13894.6 24 SALL2-201 - 906 2.2e-22 77.8 47.8 1 8 0.033 27 6.0 1.1 3 22 34 53 33 55 0.90 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 SALL2-201 - 906 2.2e-22 77.8 47.8 2 8 4.4e-05 0.036 14.9 1.2 1 23 236 258 236 259 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 SALL2-201 - 906 2.2e-22 77.8 47.8 3 8 2.8e-05 0.022 15.5 2.2 1 23 264 286 264 287 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 SALL2-201 - 906 2.2e-22 77.8 47.8 4 8 0.021 17 6.6 0.5 2 23 495 516 494 517 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 SALL2-201 - 906 2.2e-22 77.8 47.8 5 8 2.3e-06 0.0019 18.9 0.4 1 23 522 544 522 545 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 SALL2-201 - 906 2.2e-22 77.8 47.8 6 8 4.4e-06 0.0036 18.0 0.4 3 23 556 576 554 577 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 SALL2-201 - 906 2.2e-22 77.8 47.8 7 8 2.1e-05 0.018 15.9 0.1 2 23 775 796 774 797 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 SALL2-201 - 906 2.2e-22 77.8 47.8 8 8 0.00037 0.3 12.0 0.6 1 24 803 826 803 826 0.93 C2H2-type zinc finger zf-C2H2 PF00096.26 23 SALL2-201 - 906 2e-18 65.8 49.8 1 9 0.76 6.2e+02 1.2 0.2 2 21 33 52 32 53 0.89 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 SALL2-201 - 906 2e-18 65.8 49.8 2 9 0.00018 0.15 12.6 1.1 1 23 236 258 236 258 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 SALL2-201 - 906 2e-18 65.8 49.8 3 9 4.5e-06 0.0037 17.6 3.4 1 23 264 286 264 286 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 SALL2-201 - 906 2e-18 65.8 49.8 4 9 7.7 6.3e+03 -2.0 0.0 9 21 419 431 418 432 0.81 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 SALL2-201 - 906 2e-18 65.8 49.8 5 9 3.6 2.9e+03 -0.9 0.6 2 23 495 516 495 516 0.84 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 SALL2-201 - 906 2e-18 65.8 49.8 6 9 3.5e-07 0.00028 21.2 0.4 1 20 522 541 522 544 0.91 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 SALL2-201 - 906 2e-18 65.8 49.8 7 9 2e-06 0.0016 18.8 0.5 3 23 556 576 555 576 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 SALL2-201 - 906 2e-18 65.8 49.8 8 9 2.3e-06 0.0018 18.6 0.0 3 23 776 796 775 796 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 SALL2-201 - 906 2e-18 65.8 49.8 9 9 0.022 18 6.0 1.4 1 23 803 826 803 827 0.95 Zinc finger, C2H2 type zf-H2C2_2 PF13465.6 26 SALL2-201 - 906 2.6e-15 56.1 44.7 1 8 0.0039 3.1 8.4 0.3 13 25 231 246 230 247 0.80 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 SALL2-201 - 906 2.6e-15 56.1 44.7 2 8 9.3e-10 7.6e-07 29.3 0.2 1 26 250 275 250 275 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 SALL2-201 - 906 2.6e-15 56.1 44.7 3 8 7.6e-08 6.2e-05 23.2 0.2 1 26 508 533 508 533 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 SALL2-201 - 906 2.6e-15 56.1 44.7 4 8 0.03 25 5.5 0.2 16 26 555 565 536 565 0.68 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 SALL2-201 - 906 2.6e-15 56.1 44.7 5 8 2.2 1.8e+03 -0.4 0.1 2 11 569 578 568 580 0.88 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 SALL2-201 - 906 2.6e-15 56.1 44.7 6 8 0.41 3.3e+02 2.0 0.0 6 24 763 783 763 785 0.76 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 SALL2-201 - 906 2.6e-15 56.1 44.7 7 8 3.3e-06 0.0027 18.1 0.3 1 24 788 812 788 814 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 SALL2-201 - 906 2.6e-15 56.1 44.7 8 8 6.6 5.4e+03 -1.9 0.8 2 11 818 828 818 831 0.83 Zinc-finger double domain zf-C2H2_jaz PF12171.8 27 SALL2-201 - 906 2.2e-12 46.9 22.3 1 8 8.7 7.1e+03 -2.5 0.1 10 22 40 52 37 52 0.86 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 SALL2-201 - 906 2.2e-12 46.9 22.3 2 8 5.9e-06 0.0048 17.1 0.4 2 24 236 258 235 258 0.95 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 SALL2-201 - 906 2.2e-12 46.9 22.3 3 8 3.8 3.1e+03 -1.4 0.1 2 21 264 283 263 284 0.85 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 SALL2-201 - 906 2.2e-12 46.9 22.3 4 8 6.8 5.6e+03 -2.2 0.1 17 23 426 432 425 433 0.84 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 SALL2-201 - 906 2.2e-12 46.9 22.3 5 8 5.3e-05 0.043 14.1 0.0 2 25 522 545 521 545 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 SALL2-201 - 906 2.2e-12 46.9 22.3 6 8 1.8e-05 0.015 15.6 0.3 3 22 555 574 553 574 0.91 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 SALL2-201 - 906 2.2e-12 46.9 22.3 7 8 0.0034 2.8 8.3 0.0 4 24 776 796 775 797 0.95 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 SALL2-201 - 906 2.2e-12 46.9 22.3 8 8 0.12 98 3.4 0.1 2 21 803 822 802 823 0.94 Zinc-finger double-stranded RNA-binding zf-met PF12874.7 25 SALL2-201 - 906 3.2e-12 46.4 35.0 1 8 0.085 69 4.0 0.4 6 21 37 52 33 53 0.89 Zinc-finger of C2H2 type zf-met PF12874.7 25 SALL2-201 - 906 3.2e-12 46.4 35.0 2 8 0.0003 0.25 11.8 0.6 2 23 237 258 236 259 0.94 Zinc-finger of C2H2 type zf-met PF12874.7 25 SALL2-201 - 906 3.2e-12 46.4 35.0 3 8 0.032 26 5.4 0.3 1 20 264 283 264 284 0.93 Zinc-finger of C2H2 type zf-met PF12874.7 25 SALL2-201 - 906 3.2e-12 46.4 35.0 4 8 0.19 1.6e+02 2.9 0.1 3 20 496 513 495 514 0.93 Zinc-finger of C2H2 type zf-met PF12874.7 25 SALL2-201 - 906 3.2e-12 46.4 35.0 5 8 9.9e-06 0.0081 16.5 0.2 1 24 522 545 522 545 0.97 Zinc-finger of C2H2 type zf-met PF12874.7 25 SALL2-201 - 906 3.2e-12 46.4 35.0 6 8 3.2e-06 0.0026 18.1 0.2 3 20 556 573 555 574 0.93 Zinc-finger of C2H2 type zf-met PF12874.7 25 SALL2-201 - 906 3.2e-12 46.4 35.0 7 8 0.0014 1.1 9.7 0.2 3 21 776 794 774 796 0.92 Zinc-finger of C2H2 type zf-met PF12874.7 25 SALL2-201 - 906 3.2e-12 46.4 35.0 8 8 7.9 6.5e+03 -2.2 0.1 1 20 803 822 803 822 0.71 Zinc-finger of C2H2 type zf-C2H2_6 PF13912.6 27 SALL2-201 - 906 2.1e-10 40.3 24.0 1 5 0.0005 0.4 10.7 1.0 1 24 235 258 235 261 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 SALL2-201 - 906 2.1e-10 40.3 24.0 2 5 0.0022 1.8 8.6 1.4 2 20 264 282 264 289 0.75 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 SALL2-201 - 906 2.1e-10 40.3 24.0 3 5 0.00014 0.12 12.4 0.3 2 20 522 540 522 546 0.95 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 SALL2-201 - 906 2.1e-10 40.3 24.0 4 5 1.2 9.8e+02 -0.1 0.2 4 11 556 563 555 572 0.91 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 SALL2-201 - 906 2.1e-10 40.3 24.0 5 5 2.1e-07 0.00017 21.5 0.1 4 27 776 799 775 799 0.95 C2H2-type zinc finger # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/SALL2-201.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/SALL2-201.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/SALL2-201.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/SALL2-201.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/SALL2-201.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:56:36 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/SALL2-202.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/SALL2-202.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/SALL2-202.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/SALL2-202.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/SALL2-202.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:56:36 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/SALL2-203.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/SALL2-203.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/SALL2-203.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/SALL2-203.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/SALL2-203.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:56:36 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-C2H2_4 PF13894.6 24 SALL2-204 - 846 1.7e-22 78.1 39.6 1 7 5e-05 0.033 15.0 1.2 1 23 176 198 176 199 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 SALL2-204 - 846 1.7e-22 78.1 39.6 2 7 3.1e-05 0.021 15.6 2.2 1 23 204 226 204 227 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 SALL2-204 - 846 1.7e-22 78.1 39.6 3 7 0.024 16 6.7 0.5 2 23 435 456 434 457 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 SALL2-204 - 846 1.7e-22 78.1 39.6 4 7 2.6e-06 0.0018 19.0 0.4 1 23 462 484 462 485 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 SALL2-204 - 846 1.7e-22 78.1 39.6 5 7 5e-06 0.0033 18.1 0.4 3 23 496 516 494 517 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 SALL2-204 - 846 1.7e-22 78.1 39.6 6 7 2.4e-05 0.016 16.0 0.1 2 23 715 736 714 737 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 SALL2-204 - 846 1.7e-22 78.1 39.6 7 7 0.00042 0.28 12.1 0.6 1 24 743 766 743 766 0.93 C2H2-type zinc finger zf-C2H2 PF00096.26 23 SALL2-204 - 846 2.4e-19 68.6 44.6 1 8 0.00021 0.14 12.7 1.1 1 23 176 198 176 198 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 SALL2-204 - 846 2.4e-19 68.6 44.6 2 8 5.1e-06 0.0034 17.8 3.4 1 23 204 226 204 226 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 SALL2-204 - 846 2.4e-19 68.6 44.6 3 8 8.8 5.8e+03 -1.9 0.0 9 21 359 371 358 372 0.81 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 SALL2-204 - 846 2.4e-19 68.6 44.6 4 8 4.1 2.7e+03 -0.8 0.6 2 23 435 456 435 456 0.84 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 SALL2-204 - 846 2.4e-19 68.6 44.6 5 8 3.9e-07 0.00026 21.3 0.4 1 20 462 481 462 484 0.91 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 SALL2-204 - 846 2.4e-19 68.6 44.6 6 8 2.2e-06 0.0015 18.9 0.5 3 23 496 516 495 516 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 SALL2-204 - 846 2.4e-19 68.6 44.6 7 8 2.6e-06 0.0017 18.7 0.0 3 23 716 736 715 736 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 SALL2-204 - 846 2.4e-19 68.6 44.6 8 8 0.025 17 6.1 1.4 1 23 743 766 743 767 0.95 Zinc finger, C2H2 type zf-H2C2_2 PF13465.6 26 SALL2-204 - 846 1.4e-15 56.9 44.2 1 8 0.0044 2.9 8.5 0.3 13 25 171 186 170 187 0.80 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 SALL2-204 - 846 1.4e-15 56.9 44.2 2 8 1.1e-09 7e-07 29.4 0.2 1 26 190 215 190 215 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 SALL2-204 - 846 1.4e-15 56.9 44.2 3 8 8.6e-08 5.7e-05 23.4 0.2 1 26 448 473 448 473 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 SALL2-204 - 846 1.4e-15 56.9 44.2 4 8 0.034 23 5.6 0.2 16 26 495 505 476 505 0.68 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 SALL2-204 - 846 1.4e-15 56.9 44.2 5 8 2.5 1.7e+03 -0.3 0.1 2 11 509 518 508 520 0.88 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 SALL2-204 - 846 1.4e-15 56.9 44.2 6 8 0.47 3.1e+02 2.1 0.0 6 24 703 723 703 725 0.76 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 SALL2-204 - 846 1.4e-15 56.9 44.2 7 8 3.7e-06 0.0025 18.2 0.3 1 24 728 752 728 754 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 SALL2-204 - 846 1.4e-15 56.9 44.2 8 8 6.3 4.2e+03 -1.5 0.8 2 11 758 768 757 771 0.83 Zinc-finger double domain zf-C2H2_jaz PF12171.8 27 SALL2-204 - 846 2.2e-13 50.1 19.1 1 7 6.8e-06 0.0045 17.2 0.4 2 24 176 198 175 198 0.95 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 SALL2-204 - 846 2.2e-13 50.1 19.1 2 7 4.4 2.9e+03 -1.3 0.1 2 21 204 223 203 224 0.85 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 SALL2-204 - 846 2.2e-13 50.1 19.1 3 7 7.8 5.2e+03 -2.1 0.1 17 23 366 372 365 373 0.84 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 SALL2-204 - 846 2.2e-13 50.1 19.1 4 7 6e-05 0.04 14.2 0.0 2 25 462 485 461 485 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 SALL2-204 - 846 2.2e-13 50.1 19.1 5 7 2.1e-05 0.014 15.7 0.3 3 22 495 514 493 514 0.91 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 SALL2-204 - 846 2.2e-13 50.1 19.1 6 7 0.0039 2.6 8.4 0.0 4 24 716 736 715 737 0.95 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 SALL2-204 - 846 2.2e-13 50.1 19.1 7 7 0.14 90 3.5 0.1 2 21 743 762 742 763 0.94 Zinc-finger double-stranded RNA-binding zf-met PF12874.7 25 SALL2-204 - 846 1.3e-12 47.6 28.5 1 7 0.00034 0.23 11.9 0.6 2 23 177 198 176 199 0.94 Zinc-finger of C2H2 type zf-met PF12874.7 25 SALL2-204 - 846 1.3e-12 47.6 28.5 2 7 0.036 24 5.5 0.3 1 20 204 223 204 224 0.93 Zinc-finger of C2H2 type zf-met PF12874.7 25 SALL2-204 - 846 1.3e-12 47.6 28.5 3 7 0.22 1.4e+02 3.0 0.1 3 20 436 453 435 454 0.93 Zinc-finger of C2H2 type zf-met PF12874.7 25 SALL2-204 - 846 1.3e-12 47.6 28.5 4 7 1.1e-05 0.0075 16.6 0.2 1 24 462 485 462 485 0.97 Zinc-finger of C2H2 type zf-met PF12874.7 25 SALL2-204 - 846 1.3e-12 47.6 28.5 5 7 3.6e-06 0.0024 18.2 0.2 3 20 496 513 495 514 0.93 Zinc-finger of C2H2 type zf-met PF12874.7 25 SALL2-204 - 846 1.3e-12 47.6 28.5 6 7 0.0016 1 9.8 0.2 3 21 716 734 714 736 0.92 Zinc-finger of C2H2 type zf-met PF12874.7 25 SALL2-204 - 846 1.3e-12 47.6 28.5 7 7 9 6e+03 -2.1 0.1 1 20 743 762 743 762 0.71 Zinc-finger of C2H2 type zf-C2H2_6 PF13912.6 27 SALL2-204 - 846 1.7e-10 40.6 24.0 1 5 0.00056 0.37 10.8 1.0 1 24 175 198 175 201 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 SALL2-204 - 846 1.7e-10 40.6 24.0 2 5 0.0025 1.7 8.8 1.4 2 20 204 222 204 229 0.75 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 SALL2-204 - 846 1.7e-10 40.6 24.0 3 5 0.00016 0.11 12.5 0.3 2 20 462 480 462 486 0.95 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 SALL2-204 - 846 1.7e-10 40.6 24.0 4 5 1.4 9.1e+02 0.0 0.2 4 11 496 503 495 512 0.91 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 SALL2-204 - 846 1.7e-10 40.6 24.0 5 5 2.4e-07 0.00016 21.6 0.1 4 27 716 739 715 739 0.95 C2H2-type zinc finger # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/SALL2-204.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/SALL2-204.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/SALL2-204.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/SALL2-204.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/SALL2-204.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:56:37 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/SALL2-205.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/SALL2-205.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/SALL2-205.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/SALL2-205.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/SALL2-205.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:56:37 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/SALL2-206.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/SALL2-206.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/SALL2-206.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/SALL2-206.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/SALL2-206.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:56:38 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-C2H2_4 PF13894.6 24 SALL2-207 - 1007 5.6e-22 76.5 47.8 1 8 0.032 30 5.8 1.1 3 22 36 55 35 57 0.90 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 SALL2-207 - 1007 5.6e-22 76.5 47.8 2 8 4.3e-05 0.04 14.7 1.2 1 23 373 395 373 396 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 SALL2-207 - 1007 5.6e-22 76.5 47.8 3 8 2.7e-05 0.025 15.4 2.2 1 23 401 423 401 424 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 SALL2-207 - 1007 5.6e-22 76.5 47.8 4 8 0.021 20 6.4 0.5 2 23 632 653 631 654 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 SALL2-207 - 1007 5.6e-22 76.5 47.8 5 8 2.3e-06 0.0021 18.7 0.4 1 23 659 681 659 682 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 SALL2-207 - 1007 5.6e-22 76.5 47.8 6 8 4.3e-06 0.004 17.9 0.4 3 23 693 713 691 714 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 SALL2-207 - 1007 5.6e-22 76.5 47.8 7 8 2.1e-05 0.02 15.7 0.1 2 23 912 933 911 934 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 SALL2-207 - 1007 5.6e-22 76.5 47.8 8 8 0.00036 0.34 11.9 0.6 1 24 940 963 940 963 0.93 C2H2-type zinc finger zf-C2H2 PF00096.26 23 SALL2-207 - 1007 4.7e-18 64.5 49.8 1 9 0.74 7e+02 1.0 0.2 2 21 35 54 34 55 0.89 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 SALL2-207 - 1007 4.7e-18 64.5 49.8 2 9 0.00018 0.17 12.4 1.1 1 23 373 395 373 395 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 SALL2-207 - 1007 4.7e-18 64.5 49.8 3 9 4.4e-06 0.0041 17.5 3.4 1 23 401 423 401 423 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 SALL2-207 - 1007 4.7e-18 64.5 49.8 4 9 7.5 7.1e+03 -2.1 0.0 9 21 556 568 555 569 0.81 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 SALL2-207 - 1007 4.7e-18 64.5 49.8 5 9 3.5 3.3e+03 -1.1 0.6 2 23 632 653 632 653 0.84 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 SALL2-207 - 1007 4.7e-18 64.5 49.8 6 9 3.4e-07 0.00032 21.0 0.4 1 20 659 678 659 681 0.91 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 SALL2-207 - 1007 4.7e-18 64.5 49.8 7 9 1.9e-06 0.0018 18.6 0.5 3 23 693 713 692 713 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 SALL2-207 - 1007 4.7e-18 64.5 49.8 8 9 2.2e-06 0.0021 18.4 0.0 3 23 913 933 912 933 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 SALL2-207 - 1007 4.7e-18 64.5 49.8 9 9 0.021 20 5.9 1.4 1 23 940 963 940 964 0.95 Zinc finger, C2H2 type zf-H2C2_2 PF13465.6 26 SALL2-207 - 1007 3e-16 59.0 42.5 1 8 0.0037 3.5 8.2 0.3 13 25 368 383 367 384 0.80 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 SALL2-207 - 1007 3e-16 59.0 42.5 2 8 9.1e-10 8.6e-07 29.1 0.2 1 26 387 412 387 412 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 SALL2-207 - 1007 3e-16 59.0 42.5 3 8 7.4e-08 7e-05 23.1 0.2 1 26 645 670 645 670 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 SALL2-207 - 1007 3e-16 59.0 42.5 4 8 0.029 28 5.4 0.2 16 26 692 702 673 702 0.68 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 SALL2-207 - 1007 3e-16 59.0 42.5 5 8 2.2 2e+03 -0.5 0.1 2 11 706 715 705 717 0.88 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 SALL2-207 - 1007 3e-16 59.0 42.5 6 8 0.4 3.8e+02 1.8 0.0 6 24 900 920 900 922 0.76 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 SALL2-207 - 1007 3e-16 59.0 42.5 7 8 3.2e-06 0.003 17.9 0.3 1 24 925 949 925 951 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 SALL2-207 - 1007 3e-16 59.0 42.5 8 8 0.48 4.5e+02 1.6 0.2 2 15 955 969 954 971 0.90 Zinc-finger double domain zf-C2H2_jaz PF12171.8 27 SALL2-207 - 1007 4.7e-12 45.9 22.3 1 8 8.4 7.9e+03 -2.7 0.1 10 22 42 54 39 54 0.86 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 SALL2-207 - 1007 4.7e-12 45.9 22.3 2 8 5.8e-06 0.0055 17.0 0.4 2 24 373 395 372 395 0.95 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 SALL2-207 - 1007 4.7e-12 45.9 22.3 3 8 3.7 3.5e+03 -1.5 0.1 2 21 401 420 400 421 0.85 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 SALL2-207 - 1007 4.7e-12 45.9 22.3 4 8 6.6 6.2e+03 -2.3 0.1 17 23 563 569 562 570 0.84 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 SALL2-207 - 1007 4.7e-12 45.9 22.3 5 8 5.1e-05 0.049 13.9 0.0 2 25 659 682 658 682 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 SALL2-207 - 1007 4.7e-12 45.9 22.3 6 8 1.8e-05 0.017 15.4 0.3 3 22 692 711 690 711 0.91 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 SALL2-207 - 1007 4.7e-12 45.9 22.3 7 8 0.0033 3.1 8.2 0.0 4 24 913 933 912 934 0.95 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 SALL2-207 - 1007 4.7e-12 45.9 22.3 8 8 0.12 1.1e+02 3.3 0.1 2 21 940 959 939 960 0.94 Zinc-finger double-stranded RNA-binding zf-met PF12874.7 25 SALL2-207 - 1007 7.5e-12 45.2 35.0 1 8 0.082 77 3.9 0.4 6 21 39 54 35 55 0.89 Zinc-finger of C2H2 type zf-met PF12874.7 25 SALL2-207 - 1007 7.5e-12 45.2 35.0 2 8 0.00029 0.28 11.6 0.6 2 23 374 395 373 396 0.94 Zinc-finger of C2H2 type zf-met PF12874.7 25 SALL2-207 - 1007 7.5e-12 45.2 35.0 3 8 0.031 29 5.2 0.3 1 20 401 420 401 421 0.93 Zinc-finger of C2H2 type zf-met PF12874.7 25 SALL2-207 - 1007 7.5e-12 45.2 35.0 4 8 0.19 1.8e+02 2.7 0.1 3 20 633 650 632 651 0.93 Zinc-finger of C2H2 type zf-met PF12874.7 25 SALL2-207 - 1007 7.5e-12 45.2 35.0 5 8 9.7e-06 0.0091 16.4 0.2 1 24 659 682 659 682 0.97 Zinc-finger of C2H2 type zf-met PF12874.7 25 SALL2-207 - 1007 7.5e-12 45.2 35.0 6 8 3.1e-06 0.0029 17.9 0.2 3 20 693 710 692 711 0.93 Zinc-finger of C2H2 type zf-met PF12874.7 25 SALL2-207 - 1007 7.5e-12 45.2 35.0 7 8 0.0013 1.3 9.5 0.2 3 21 913 931 911 933 0.92 Zinc-finger of C2H2 type zf-met PF12874.7 25 SALL2-207 - 1007 7.5e-12 45.2 35.0 8 8 7.7 7.3e+03 -2.4 0.1 1 20 940 959 940 959 0.71 Zinc-finger of C2H2 type zf-C2H2_6 PF13912.6 27 SALL2-207 - 1007 3.9e-10 39.5 24.0 1 5 0.00048 0.45 10.6 1.0 1 24 372 395 372 398 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 SALL2-207 - 1007 3.9e-10 39.5 24.0 2 5 0.0022 2 8.5 1.4 2 20 401 419 401 426 0.75 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 SALL2-207 - 1007 3.9e-10 39.5 24.0 3 5 0.00014 0.13 12.3 0.3 2 20 659 677 659 683 0.95 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 SALL2-207 - 1007 3.9e-10 39.5 24.0 4 5 1.2 1.1e+03 -0.2 0.2 4 11 693 700 692 709 0.91 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 SALL2-207 - 1007 3.9e-10 39.5 24.0 5 5 2e-07 0.00019 21.3 0.1 4 27 913 936 912 936 0.95 C2H2-type zinc finger # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/SALL2-207.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/SALL2-207.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/SALL2-207.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/SALL2-207.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/SALL2-207.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:56:38 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-C2H2 PF00096.26 23 SCRT1-201 - 348 4.6e-25 86.6 27.9 1 5 9.7e-08 6.7e-05 23.1 1.3 1 23 191 213 191 213 0.95 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 SCRT1-201 - 348 4.6e-25 86.6 27.9 2 5 0.00035 0.24 11.9 0.1 2 23 223 244 223 244 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 SCRT1-201 - 348 4.6e-25 86.6 27.9 3 5 7.4e-09 5.1e-06 26.7 0.4 1 23 248 270 248 270 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 SCRT1-201 - 348 4.6e-25 86.6 27.9 4 5 1.1e-08 7.7e-06 26.1 0.7 3 23 278 298 276 298 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 SCRT1-201 - 348 4.6e-25 86.6 27.9 5 5 1.8e-05 0.013 15.9 1.9 1 20 304 323 304 325 0.95 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 SCRT1-201 - 348 7.5e-19 66.8 26.4 1 5 4.4e-06 0.003 18.2 1.1 1 23 191 213 191 214 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 SCRT1-201 - 348 7.5e-19 66.8 26.4 2 5 0.00022 0.15 12.9 0.1 2 23 223 244 222 245 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 SCRT1-201 - 348 7.5e-19 66.8 26.4 3 5 1.8e-06 0.0013 19.4 0.7 1 23 248 270 248 271 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 SCRT1-201 - 348 7.5e-19 66.8 26.4 4 5 8e-07 0.00055 20.5 0.5 2 23 277 298 276 299 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 SCRT1-201 - 348 7.5e-19 66.8 26.4 5 5 0.00036 0.25 12.3 1.1 1 21 304 324 304 326 0.92 C2H2-type zinc finger zf-H2C2_2 PF13465.6 26 SCRT1-201 - 348 8.5e-17 60.8 20.2 1 5 0.11 73 4.1 0.0 15 26 191 202 188 202 0.88 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 SCRT1-201 - 348 8.5e-17 60.8 20.2 2 5 0.00012 0.084 13.3 0.2 1 25 205 232 205 233 0.81 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 SCRT1-201 - 348 8.5e-17 60.8 20.2 3 5 0.0087 6 7.5 0.1 14 25 247 258 239 259 0.87 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 SCRT1-201 - 348 8.5e-17 60.8 20.2 4 5 2.6e-09 1.8e-06 28.1 0.3 2 25 263 286 263 287 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 SCRT1-201 - 348 8.5e-17 60.8 20.2 5 5 8.4e-06 0.0058 17.0 3.4 1 25 290 314 290 314 0.96 Zinc-finger double domain zf-C2H2_6 PF13912.6 27 SCRT1-201 - 348 5.2e-10 39.1 30.5 1 5 8.6e-05 0.059 13.4 2.9 1 26 190 215 190 216 0.95 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 SCRT1-201 - 348 5.2e-10 39.1 30.5 2 5 5.5e-05 0.038 14.0 0.0 2 24 222 244 221 245 0.91 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 SCRT1-201 - 348 5.2e-10 39.1 30.5 3 5 8.1e-05 0.056 13.5 1.5 1 24 247 270 247 273 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 SCRT1-201 - 348 5.2e-10 39.1 30.5 4 5 0.0034 2.3 8.3 0.8 2 25 276 299 276 300 0.92 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 SCRT1-201 - 348 5.2e-10 39.1 30.5 5 5 0.024 16 5.6 2.5 1 11 303 313 303 314 0.92 C2H2-type zinc finger zf-met PF12874.7 25 SCRT1-201 - 348 6.3e-08 32.7 22.4 1 5 0.075 52 4.4 1.2 3 23 193 213 191 214 0.90 Zinc-finger of C2H2 type zf-met PF12874.7 25 SCRT1-201 - 348 6.3e-08 32.7 22.4 2 5 0.015 10 6.7 0.0 2 20 223 241 222 244 0.93 Zinc-finger of C2H2 type zf-met PF12874.7 25 SCRT1-201 - 348 6.3e-08 32.7 22.4 3 5 0.00021 0.15 12.5 0.2 2 23 249 270 248 271 0.94 Zinc-finger of C2H2 type zf-met PF12874.7 25 SCRT1-201 - 348 6.3e-08 32.7 22.4 4 5 0.0004 0.28 11.6 0.3 3 21 278 296 276 298 0.92 Zinc-finger of C2H2 type zf-met PF12874.7 25 SCRT1-201 - 348 6.3e-08 32.7 22.4 5 5 0.0013 0.87 10.1 1.6 1 22 304 325 304 326 0.95 Zinc-finger of C2H2 type zf-C2H2_jaz PF12171.8 27 SCRT1-201 - 348 1.5e-07 31.5 13.5 1 5 0.0016 1.1 9.7 0.3 2 24 191 213 190 214 0.91 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 SCRT1-201 - 348 1.5e-07 31.5 13.5 2 5 0.09 62 4.0 0.0 4 23 224 243 222 245 0.87 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 SCRT1-201 - 348 1.5e-07 31.5 13.5 3 5 0.0034 2.4 8.6 0.0 2 24 248 270 247 270 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 SCRT1-201 - 348 1.5e-07 31.5 13.5 4 5 0.0001 0.07 13.4 0.1 4 24 278 298 275 299 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 SCRT1-201 - 348 1.5e-07 31.5 13.5 5 5 3.1 2.1e+03 -0.8 2.9 2 23 304 325 303 326 0.80 Zinc-finger double-stranded RNA-binding # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/SCRT1-201.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/SCRT1-201.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/SCRT1-201.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/SCRT1-201.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/SCRT1-201.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:56:38 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-C2H2 PF00096.26 23 SCRT2-201 - 307 5.9e-25 86.3 28.4 1 5 2.2e-07 0.00016 22.0 1.3 2 23 156 177 155 177 0.95 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 SCRT2-201 - 307 5.9e-25 86.3 28.4 2 5 6.9e-05 0.05 14.1 0.1 2 23 187 208 187 208 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 SCRT2-201 - 307 5.9e-25 86.3 28.4 3 5 6e-09 4.3e-06 26.9 0.4 1 23 212 234 212 234 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 SCRT2-201 - 307 5.9e-25 86.3 28.4 4 5 9.2e-09 6.6e-06 26.3 0.7 3 23 242 262 240 262 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 SCRT2-201 - 307 5.9e-25 86.3 28.4 5 5 0.00011 0.076 13.5 2.9 1 19 268 286 268 286 0.98 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 SCRT2-201 - 307 1.3e-18 66.1 28.6 1 5 8.3e-06 0.006 17.3 1.2 1 23 155 177 155 178 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 SCRT2-201 - 307 1.3e-18 66.1 28.6 2 5 0.00016 0.11 13.4 0.1 2 23 187 208 186 209 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 SCRT2-201 - 307 1.3e-18 66.1 28.6 3 5 1.5e-06 0.0011 19.7 0.7 1 23 212 234 212 235 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 SCRT2-201 - 307 1.3e-18 66.1 28.6 4 5 6.6e-07 0.00047 20.8 0.5 2 23 241 262 240 263 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 SCRT2-201 - 307 1.3e-18 66.1 28.6 5 5 0.00038 0.27 12.2 2.5 1 21 268 288 268 290 0.92 C2H2-type zinc finger zf-H2C2_2 PF13465.6 26 SCRT2-201 - 307 4.6e-17 61.6 26.5 1 6 0.051 37 5.0 0.1 14 26 154 166 151 166 0.87 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 SCRT2-201 - 307 4.6e-17 61.6 26.5 2 6 2e-05 0.014 15.8 0.2 1 26 169 197 169 197 0.82 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 SCRT2-201 - 307 4.6e-17 61.6 26.5 3 6 0.004 2.9 8.5 0.2 7 25 206 222 200 223 0.73 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 SCRT2-201 - 307 4.6e-17 61.6 26.5 4 6 2.2e-09 1.6e-06 28.3 0.3 2 25 227 250 227 251 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 SCRT2-201 - 307 4.6e-17 61.6 26.5 5 6 9.3e-07 0.00067 20.0 1.8 1 25 254 278 254 278 0.97 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 SCRT2-201 - 307 4.6e-17 61.6 26.5 6 6 8.7 6.2e+03 -2.1 0.2 16 23 286 294 283 295 0.79 Zinc-finger double domain zf-C2H2_6 PF13912.6 27 SCRT2-201 - 307 1e-11 44.5 29.5 1 5 1.5e-05 0.011 15.8 2.7 1 26 154 179 154 180 0.96 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 SCRT2-201 - 307 1e-11 44.5 29.5 2 5 4.8e-05 0.034 14.1 0.0 2 24 186 208 185 209 0.92 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 SCRT2-201 - 307 1e-11 44.5 29.5 3 5 7e-05 0.05 13.6 1.6 1 24 211 234 211 237 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 SCRT2-201 - 307 1e-11 44.5 29.5 4 5 0.0028 2 8.5 0.8 2 25 240 263 240 264 0.92 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 SCRT2-201 - 307 1e-11 44.5 29.5 5 5 0.0025 1.8 8.7 0.9 1 11 267 277 267 278 0.93 C2H2-type zinc finger zf-C2H2_jaz PF12171.8 27 SCRT2-201 - 307 6.8e-08 32.6 16.5 1 5 0.00073 0.53 10.6 0.5 2 24 155 177 154 178 0.91 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 SCRT2-201 - 307 6.8e-08 32.6 16.5 2 5 0.091 65 4.0 0.0 3 24 187 208 186 209 0.87 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 SCRT2-201 - 307 6.8e-08 32.6 16.5 3 5 0.0028 2 8.8 0.0 2 24 212 234 211 234 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 SCRT2-201 - 307 6.8e-08 32.6 16.5 4 5 8.3e-05 0.06 13.7 0.1 4 24 242 262 239 263 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 SCRT2-201 - 307 6.8e-08 32.6 16.5 5 5 1.2 8.3e+02 0.5 4.0 2 20 268 286 267 288 0.75 Zinc-finger double-stranded RNA-binding # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/SCRT2-201.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/SCRT2-201.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/SCRT2-201.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/SCRT2-201.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/SCRT2-201.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:56:39 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-C2H2 PF00096.26 23 SNAI1-201 - 264 1.2e-16 60.2 29.3 1 4 2.8e-05 0.023 15.1 0.8 1 23 154 176 154 176 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 SNAI1-201 - 264 1.2e-16 60.2 29.3 2 4 6.8e-08 5.5e-05 23.4 0.4 2 23 181 202 180 202 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 SNAI1-201 - 264 1.2e-16 60.2 29.3 3 4 6.1e-09 5e-06 26.7 1.4 1 23 208 230 208 230 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 SNAI1-201 - 264 1.2e-16 60.2 29.3 4 4 3.1e-05 0.025 15.0 0.8 1 20 236 255 236 257 0.95 Zinc finger, C2H2 type zf-H2C2_2 PF13465.6 26 SNAI1-201 - 264 3.1e-15 55.8 22.6 1 4 0.012 9.9 6.8 0.7 13 25 152 164 149 165 0.84 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 SNAI1-201 - 264 3.1e-15 55.8 22.6 2 4 0.0046 3.8 8.1 2.6 1 25 168 190 168 191 0.87 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 SNAI1-201 - 264 3.1e-15 55.8 22.6 3 4 3.5e-10 2.8e-07 30.6 0.6 2 25 195 218 195 219 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 SNAI1-201 - 264 3.1e-15 55.8 22.6 4 4 8.9e-08 7.3e-05 23.0 0.3 1 25 222 246 222 247 0.96 Zinc-finger double domain zf-C2H2_4 PF13894.6 24 SNAI1-201 - 264 5.3e-15 54.8 22.5 1 4 3.1e-06 0.0025 18.5 0.6 1 23 154 176 154 177 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 SNAI1-201 - 264 5.3e-15 54.8 22.5 2 4 4.8e-05 0.039 14.8 0.7 2 23 181 202 180 203 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 SNAI1-201 - 264 5.3e-15 54.8 22.5 3 4 9.4e-08 7.7e-05 23.2 1.3 1 23 208 230 208 231 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 SNAI1-201 - 264 5.3e-15 54.8 22.5 4 4 0.00047 0.38 11.7 0.8 1 21 236 256 236 257 0.88 C2H2-type zinc finger zf-C2H2_jaz PF12171.8 27 SNAI1-201 - 264 5.1e-14 52.1 10.5 1 4 1.8e-06 0.0015 18.8 0.8 2 24 154 176 153 176 0.96 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 SNAI1-201 - 264 5.1e-14 52.1 10.5 2 4 0.1 83 3.6 0.0 4 24 182 202 181 202 0.91 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 SNAI1-201 - 264 5.1e-14 52.1 10.5 3 4 2.5e-06 0.002 18.3 0.1 2 24 208 230 207 231 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 SNAI1-201 - 264 5.1e-14 52.1 10.5 4 4 3.4e-05 0.028 14.7 1.0 2 23 236 257 235 257 0.90 Zinc-finger double-stranded RNA-binding zf-met PF12874.7 25 SNAI1-201 - 264 9.5e-07 29.0 14.7 1 4 0.00089 0.73 10.3 1.0 1 23 154 176 154 177 0.93 Zinc-finger of C2H2 type zf-met PF12874.7 25 SNAI1-201 - 264 9.5e-07 29.0 14.7 2 4 0.042 35 5.0 0.0 3 21 182 200 181 203 0.90 Zinc-finger of C2H2 type zf-met PF12874.7 25 SNAI1-201 - 264 9.5e-07 29.0 14.7 3 4 6e-05 0.049 14.0 0.3 1 21 208 228 208 230 0.94 Zinc-finger of C2H2 type zf-met PF12874.7 25 SNAI1-201 - 264 9.5e-07 29.0 14.7 4 4 0.0089 7.2 7.1 0.6 1 22 236 257 236 258 0.91 Zinc-finger of C2H2 type # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/SNAI1-201.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/SNAI1-201.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/SNAI1-201.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/SNAI1-201.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/SNAI1-201.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:56:39 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 SP1-201 - 785 5e-12 45.7 10.7 1 4 4.8 1.2e+04 -3.0 4.2 16 22 605 611 604 612 0.86 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 SP1-201 - 785 5e-12 45.7 10.7 2 4 1.2e-09 3e-06 27.4 0.9 1 26 642 669 642 669 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 SP1-201 - 785 5e-12 45.7 10.7 3 4 4.9e-11 1.3e-07 31.8 3.0 2 24 673 695 672 695 0.97 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 SP1-201 - 785 5e-12 45.7 10.7 4 4 0.014 35 5.1 0.9 1 13 700 712 700 715 0.91 Zinc-finger double domain zf-C2H2 PF00096.26 23 SP1-201 - 785 3.7e-11 42.8 33.4 1 4 7 1.8e+04 -3.5 3.6 2 7 605 610 604 612 0.85 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 SP1-201 - 785 3.7e-11 42.8 33.4 2 4 3.8e-06 0.0098 16.3 2.6 1 23 626 650 626 650 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 SP1-201 - 785 3.7e-11 42.8 33.4 3 4 1.1e-08 2.7e-05 24.4 2.2 1 23 656 680 656 680 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 SP1-201 - 785 3.7e-11 42.8 33.4 4 4 3.3e-08 8.4e-05 22.8 2.2 1 23 686 708 686 708 0.97 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 SP1-201 - 785 8.9e-07 29.2 29.2 1 4 1.8 4.6e+03 -1.0 2.0 2 7 605 610 604 614 0.80 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 SP1-201 - 785 8.9e-07 29.2 29.2 2 4 0.0011 2.7 9.1 2.2 1 23 626 650 626 651 0.91 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 SP1-201 - 785 8.9e-07 29.2 29.2 3 4 3.6e-06 0.0093 16.7 1.4 2 23 657 680 656 681 0.87 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 SP1-201 - 785 8.9e-07 29.2 29.2 4 4 1.7e-07 0.00044 20.9 1.7 1 23 686 708 686 709 0.97 C2H2-type zinc finger # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/SP1-201.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/SP1-201.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/SP1-201.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/SP1-201.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/SP1-201.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:56:40 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 SP1-202 - 778 4.8e-12 45.7 10.7 1 4 4.7 1.2e+04 -3.0 4.2 16 22 598 604 597 605 0.86 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 SP1-202 - 778 4.8e-12 45.7 10.7 2 4 1.2e-09 3e-06 27.4 0.9 1 26 635 662 635 662 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 SP1-202 - 778 4.8e-12 45.7 10.7 3 4 4.9e-11 1.2e-07 31.8 3.0 2 24 666 688 665 688 0.97 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 SP1-202 - 778 4.8e-12 45.7 10.7 4 4 0.014 35 5.1 0.9 1 13 693 705 693 708 0.91 Zinc-finger double domain zf-C2H2 PF00096.26 23 SP1-202 - 778 3.6e-11 42.9 33.4 1 4 7 1.8e+04 -3.5 3.6 2 7 598 603 597 605 0.85 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 SP1-202 - 778 3.6e-11 42.9 33.4 2 4 3.8e-06 0.0097 16.3 2.6 1 23 619 643 619 643 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 SP1-202 - 778 3.6e-11 42.9 33.4 3 4 1.1e-08 2.7e-05 24.4 2.2 1 23 649 673 649 673 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 SP1-202 - 778 3.6e-11 42.9 33.4 4 4 3.3e-08 8.4e-05 22.8 2.2 1 23 679 701 679 701 0.97 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 SP1-202 - 778 8.6e-07 29.3 29.2 1 4 1.8 4.5e+03 -1.0 2.0 2 7 598 603 597 607 0.80 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 SP1-202 - 778 8.6e-07 29.3 29.2 2 4 0.001 2.7 9.1 2.2 1 23 619 643 619 644 0.91 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 SP1-202 - 778 8.6e-07 29.3 29.2 3 4 3.6e-06 0.0092 16.8 1.4 2 23 650 673 649 674 0.87 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 SP1-202 - 778 8.6e-07 29.3 29.2 4 4 1.7e-07 0.00043 20.9 1.7 1 23 679 701 679 702 0.97 C2H2-type zinc finger # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/SP1-202.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/SP1-202.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/SP1-202.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/SP1-202.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/SP1-202.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:56:40 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/SP1-203.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/SP1-203.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/SP1-203.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/SP1-203.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/SP1-203.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:56:40 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/SP1-204.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/SP1-204.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/SP1-204.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/SP1-204.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/SP1-204.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:56:41 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-C2H2 PF00096.26 23 SP2-201 - 613 7.4e-12 45.0 32.6 1 4 8 1.8e+04 -3.7 2.3 2 7 506 511 505 515 0.86 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 SP2-201 - 613 7.4e-12 45.0 32.6 2 4 3.9e-08 8.7e-05 22.8 2.2 1 23 525 549 525 549 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 SP2-201 - 613 7.4e-12 45.0 32.6 3 4 1.2e-08 2.7e-05 24.4 1.1 1 23 555 579 555 579 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 SP2-201 - 613 7.4e-12 45.0 32.6 4 4 1.5e-06 0.0034 17.7 4.7 1 23 585 607 585 607 0.98 Zinc finger, C2H2 type zf-H2C2_2 PF13465.6 26 SP2-201 - 613 4.5e-11 42.7 5.9 1 5 0.47 1.1e+03 0.4 0.6 16 22 506 512 494 513 0.69 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 SP2-201 - 613 4.5e-11 42.7 5.9 2 5 0.028 63 4.2 0.8 11 25 521 537 515 538 0.88 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 SP2-201 - 613 4.5e-11 42.7 5.9 3 5 1.9e-09 4.2e-06 26.9 0.5 2 26 542 568 542 568 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 SP2-201 - 613 4.5e-11 42.7 5.9 4 5 2e-09 4.5e-06 26.9 0.7 2 24 572 594 571 594 0.97 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 SP2-201 - 613 4.5e-11 42.7 5.9 5 5 0.45 1e+03 0.4 1.6 1 13 599 611 599 613 0.85 Zinc-finger double domain # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/SP2-201.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/SP2-201.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/SP2-201.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/SP2-201.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/SP2-201.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:56:41 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/SP2-202.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/SP2-202.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/SP2-202.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/SP2-202.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/SP2-202.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:56:41 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/SP2-203.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/SP2-203.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/SP2-203.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/SP2-203.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/SP2-203.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:56:42 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/SP2-204.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/SP2-204.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/SP2-204.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/SP2-204.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/SP2-204.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:56:42 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/SP2-205.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/SP2-205.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/SP2-205.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/SP2-205.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/SP2-205.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:56:43 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/SP2-206.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/SP2-206.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/SP2-206.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/SP2-206.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/SP2-206.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:56:43 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-C2H2 PF00096.26 23 SP3-201 - 781 1.1e-13 50.8 29.0 1 4 3 6.7e+03 -2.1 1.2 2 7 601 606 600 614 0.86 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 SP3-201 - 781 1.1e-13 50.8 29.0 2 4 3e-06 0.0067 16.8 2.1 1 23 621 645 621 645 0.95 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 SP3-201 - 781 1.1e-13 50.8 29.0 3 4 1.4e-09 3e-06 27.4 1.6 1 23 651 675 651 675 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 SP3-201 - 781 1.1e-13 50.8 29.0 4 4 1e-08 2.3e-05 24.6 2.2 1 23 681 703 681 703 0.99 Zinc finger, C2H2 type zf-H2C2_2 PF13465.6 26 SP3-201 - 781 2.3e-12 46.7 24.1 1 4 0.83 1.9e+03 -0.4 0.2 16 21 601 606 587 610 0.77 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 SP3-201 - 781 2.3e-12 46.7 24.1 2 4 4.9e-09 1.1e-05 25.6 0.6 1 26 637 664 637 664 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 SP3-201 - 781 2.3e-12 46.7 24.1 3 4 5.9e-11 1.3e-07 31.7 2.4 2 24 668 690 667 690 0.97 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 SP3-201 - 781 2.3e-12 46.7 24.1 4 4 0.11 2.6e+02 2.3 2.0 1 13 695 707 695 711 0.87 Zinc-finger double domain # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/SP3-201.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/SP3-201.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/SP3-201.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/SP3-201.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/SP3-201.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:56:43 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-C2H2 PF00096.26 23 SP3-202 - 728 8e-14 51.2 29.0 1 4 2.8 6.2e+03 -2.0 1.2 2 7 548 553 547 561 0.86 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 SP3-202 - 728 8e-14 51.2 29.0 2 4 2.8e-06 0.0062 16.9 2.1 1 23 568 592 568 592 0.95 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 SP3-202 - 728 8e-14 51.2 29.0 3 4 1.2e-09 2.8e-06 27.5 1.6 1 23 598 622 598 622 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 SP3-202 - 728 8e-14 51.2 29.0 4 4 9.4e-09 2.1e-05 24.7 2.2 1 23 628 650 628 650 0.99 Zinc finger, C2H2 type zf-H2C2_2 PF13465.6 26 SP3-202 - 728 1.7e-12 47.1 24.1 1 4 0.77 1.7e+03 -0.3 0.2 16 21 548 553 534 557 0.77 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 SP3-202 - 728 1.7e-12 47.1 24.1 2 4 4.5e-09 1e-05 25.7 0.6 1 26 584 611 584 611 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 SP3-202 - 728 1.7e-12 47.1 24.1 3 4 5.5e-11 1.2e-07 31.8 2.4 2 24 615 637 614 637 0.97 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 SP3-202 - 728 1.7e-12 47.1 24.1 4 4 0.11 2.4e+02 2.4 2.0 1 13 642 654 642 658 0.87 Zinc-finger double domain # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/SP3-202.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/SP3-202.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/SP3-202.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/SP3-202.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/SP3-202.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:56:44 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-C2H2 PF00096.26 23 SP3-203 - 496 8.4e-15 54.3 28.2 1 4 1.5 2.7e+03 -0.8 0.8 2 8 316 322 315 330 0.83 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 SP3-203 - 496 8.4e-15 54.3 28.2 2 4 2.2e-06 0.0039 17.5 2.1 1 23 336 360 336 360 0.95 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 SP3-203 - 496 8.4e-15 54.3 28.2 3 4 9.9e-10 1.8e-06 28.1 1.6 1 23 366 390 366 390 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 SP3-203 - 496 8.4e-15 54.3 28.2 4 4 7.5e-09 1.3e-05 25.3 2.2 1 23 396 418 396 418 0.99 Zinc finger, C2H2 type zf-H2C2_2 PF13465.6 26 SP3-203 - 496 2.8e-13 49.6 24.1 1 4 0.62 1.1e+03 0.3 0.2 16 21 316 321 302 325 0.76 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 SP3-203 - 496 2.8e-13 49.6 24.1 2 4 3.6e-09 6.4e-06 26.4 0.6 1 26 352 379 352 379 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 SP3-203 - 496 2.8e-13 49.6 24.1 3 4 4.4e-11 7.8e-08 32.4 2.4 2 24 383 405 382 405 0.97 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 SP3-203 - 496 2.8e-13 49.6 24.1 4 4 0.085 1.5e+02 3.0 2.0 1 13 410 422 410 426 0.87 Zinc-finger double domain # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/SP3-203.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/SP3-203.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/SP3-203.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/SP3-203.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/SP3-203.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:56:44 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/SP3-204.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/SP3-204.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/SP3-204.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/SP3-204.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/SP3-204.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:56:44 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-C2H2 PF00096.26 23 SP3-205 - 126 9.2e-13 47.9 10.0 1 2 1.6e-08 1.9e-05 24.8 1.0 5 23 2 20 1 20 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 SP3-205 - 126 9.2e-13 47.9 10.0 2 2 1.7e-09 2.1e-06 27.9 2.2 1 23 26 48 26 48 0.99 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 SP3-205 - 126 1e-09 38.4 7.9 1 2 1.5e-06 0.0018 18.9 0.4 5 23 2 20 1 21 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 SP3-205 - 126 1e-09 38.4 7.9 2 2 6.9e-08 8.2e-05 23.1 1.8 1 23 26 48 26 49 0.97 C2H2-type zinc finger zf-H2C2_2 PF13465.6 26 SP3-205 - 126 4.7e-09 36.3 14.5 1 3 0.2 2.4e+02 2.4 0.1 19 26 2 9 1 9 0.85 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 SP3-205 - 126 4.7e-09 36.3 14.5 2 3 1e-11 1.2e-08 35.0 2.4 2 24 13 35 12 35 0.97 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 SP3-205 - 126 4.7e-09 36.3 14.5 3 3 0.018 21 5.8 1.7 1 13 40 52 40 57 0.88 Zinc-finger double domain # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/SP3-205.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/SP3-205.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/SP3-205.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/SP3-205.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/SP3-205.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:56:45 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/SP3-206.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/SP3-206.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/SP3-206.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/SP3-206.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/SP3-206.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:56:45 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/SP3-207.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/SP3-207.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/SP3-207.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/SP3-207.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/SP3-207.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:56:45 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/SP3-208.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/SP3-208.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/SP3-208.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/SP3-208.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/SP3-208.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:56:46 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 SP4-201 - 784 3.9e-12 46.0 9.0 1 4 6 1.8e+04 -3.9 1.8 17 21 627 631 623 632 0.89 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 SP4-201 - 784 3.9e-12 46.0 9.0 2 4 8.3e-09 2.5e-05 24.5 0.5 1 26 663 690 663 690 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 SP4-201 - 784 3.9e-12 46.0 9.0 3 4 6.9e-12 2.1e-08 34.2 2.5 2 24 694 716 693 716 0.97 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 SP4-201 - 784 3.9e-12 46.0 9.0 4 4 0.093 2.8e+02 2.2 1.9 1 13 721 733 721 734 0.91 Zinc-finger double domain zf-C2H2 PF00096.26 23 SP4-201 - 784 3e-10 40.0 31.9 1 4 6 1.8e+04 -5.2 2.4 2 7 626 631 625 632 0.79 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 SP4-201 - 784 3e-10 40.0 31.9 2 4 2.4e-06 0.0072 16.7 2.2 1 23 647 671 647 671 0.95 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 SP4-201 - 784 3e-10 40.0 31.9 3 4 2e-08 6.1e-05 23.3 1.5 1 23 677 701 677 701 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 SP4-201 - 784 3e-10 40.0 31.9 4 4 1.4e-07 0.00042 20.6 3.3 1 23 707 729 707 729 0.98 Zinc finger, C2H2 type # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/SP4-201.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/SP4-201.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/SP4-201.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/SP4-201.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/SP4-201.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:56:46 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/SP4-202.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/SP4-202.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/SP4-202.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/SP4-202.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/SP4-202.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:56:47 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/SP4-203.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/SP4-203.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/SP4-203.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/SP4-203.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/SP4-203.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:56:47 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/SP4-204.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/SP4-204.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/SP4-204.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/SP4-204.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/SP4-204.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:56:47 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 SP4-205 - 767 3.7e-12 46.1 9.0 1 4 6 1.8e+04 -3.9 1.8 17 21 610 614 606 615 0.89 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 SP4-205 - 767 3.7e-12 46.1 9.0 2 4 8e-09 2.4e-05 24.5 0.5 1 26 646 673 646 673 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 SP4-205 - 767 3.7e-12 46.1 9.0 3 4 6.8e-12 2e-08 34.3 2.5 2 24 677 699 676 699 0.97 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 SP4-205 - 767 3.7e-12 46.1 9.0 4 4 0.091 2.7e+02 2.2 1.9 1 13 704 716 704 717 0.91 Zinc-finger double domain zf-C2H2 PF00096.26 23 SP4-205 - 767 2.7e-10 40.1 31.9 1 4 6 1.8e+04 -5.2 2.4 2 7 609 614 608 615 0.79 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 SP4-205 - 767 2.7e-10 40.1 31.9 2 4 2.4e-06 0.007 16.8 2.2 1 23 630 654 630 654 0.95 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 SP4-205 - 767 2.7e-10 40.1 31.9 3 4 2e-08 5.9e-05 23.3 1.5 1 23 660 684 660 684 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 SP4-205 - 767 2.7e-10 40.1 31.9 4 4 1.4e-07 0.00041 20.6 3.3 1 23 690 712 690 712 0.98 Zinc finger, C2H2 type # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/SP4-205.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/SP4-205.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/SP4-205.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/SP4-205.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/SP4-205.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:56:48 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-C2H2 PF00096.26 23 SP5-201 - 398 3.7e-15 55.4 26.3 1 4 3.9 5.8e+03 -1.9 1.1 2 7 275 280 274 282 0.83 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 SP5-201 - 398 3.7e-15 55.4 26.3 2 4 8.2e-07 0.0012 19.2 2.2 1 23 296 320 296 320 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 SP5-201 - 398 3.7e-15 55.4 26.3 3 4 8.9e-10 1.3e-06 28.5 0.8 1 23 326 350 326 350 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 SP5-201 - 398 3.7e-15 55.4 26.3 4 4 1.7e-08 2.6e-05 24.4 1.4 1 23 356 378 356 378 0.97 Zinc finger, C2H2 type zf-H2C2_2 PF13465.6 26 SP5-201 - 398 9.8e-15 54.2 7.2 1 5 5.1 7.7e+03 -2.3 1.1 16 21 275 280 273 283 0.83 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 SP5-201 - 398 9.8e-15 54.2 7.2 2 5 0.84 1.3e+03 0.1 0.5 12 25 293 308 290 309 0.72 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 SP5-201 - 398 9.8e-15 54.2 7.2 3 5 3e-10 4.5e-07 30.0 0.6 1 26 312 339 312 339 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 SP5-201 - 398 9.8e-15 54.2 7.2 4 5 5.3e-12 7.9e-09 35.6 1.1 2 24 343 365 342 365 0.97 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 SP5-201 - 398 9.8e-15 54.2 7.2 5 5 0.17 2.6e+02 2.3 1.4 1 13 370 382 370 385 0.89 Zinc-finger double domain zf-C2H2_4 PF13894.6 24 SP5-201 - 398 4.2e-07 30.3 30.0 1 3 0.0025 3.7 8.6 2.4 2 23 297 320 296 321 0.87 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 SP5-201 - 398 4.2e-07 30.3 30.0 2 3 9.9e-07 0.0015 19.2 0.8 1 23 326 350 326 351 0.90 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 SP5-201 - 398 4.2e-07 30.3 30.0 3 3 8.5e-08 0.00013 22.5 1.2 1 23 356 378 356 379 0.97 C2H2-type zinc finger # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/SP5-201.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/SP5-201.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/SP5-201.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/SP5-201.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/SP5-201.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:56:48 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-C2H2 PF00096.26 23 SP7-201 - 431 2.1e-12 46.7 32.8 1 3 7.7e-07 0.0013 19.1 1.9 1 23 294 318 294 318 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 SP7-201 - 431 2.1e-12 46.7 32.8 2 3 5.8e-09 9.5e-06 25.8 0.6 1 23 324 348 324 348 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 SP7-201 - 431 2.1e-12 46.7 32.8 3 3 8.5e-08 0.00014 22.1 5.5 1 23 354 376 354 376 0.99 Zinc finger, C2H2 type zf-H2C2_2 PF13465.6 26 SP7-201 - 431 8e-12 45.0 10.1 1 4 2.4 3.9e+03 -1.4 0.2 12 25 290 306 289 307 0.73 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 SP7-201 - 431 8e-12 45.0 10.1 2 4 5e-10 8.1e-07 29.2 0.8 1 26 310 337 310 337 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 SP7-201 - 431 8e-12 45.0 10.1 3 4 9.8e-10 1.6e-06 28.3 2.8 2 26 341 365 340 365 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 SP7-201 - 431 8e-12 45.0 10.1 4 4 0.062 1e+02 3.6 0.2 1 10 368 377 368 383 0.81 Zinc-finger double domain # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/SP7-201.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/SP7-201.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/SP7-201.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/SP7-201.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/SP7-201.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:56:48 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-C2H2 PF00096.26 23 SP7-202 - 431 2.1e-12 46.7 32.8 1 3 7.7e-07 0.0013 19.1 1.9 1 23 294 318 294 318 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 SP7-202 - 431 2.1e-12 46.7 32.8 2 3 5.8e-09 9.5e-06 25.8 0.6 1 23 324 348 324 348 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 SP7-202 - 431 2.1e-12 46.7 32.8 3 3 8.5e-08 0.00014 22.1 5.5 1 23 354 376 354 376 0.99 Zinc finger, C2H2 type zf-H2C2_2 PF13465.6 26 SP7-202 - 431 8e-12 45.0 10.1 1 4 2.4 3.9e+03 -1.4 0.2 12 25 290 306 289 307 0.73 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 SP7-202 - 431 8e-12 45.0 10.1 2 4 5e-10 8.1e-07 29.2 0.8 1 26 310 337 310 337 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 SP7-202 - 431 8e-12 45.0 10.1 3 4 9.8e-10 1.6e-06 28.3 2.8 2 26 341 365 340 365 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 SP7-202 - 431 8e-12 45.0 10.1 4 4 0.062 1e+02 3.6 0.2 1 10 368 377 368 383 0.81 Zinc-finger double domain # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/SP7-202.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/SP7-202.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/SP7-202.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/SP7-202.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/SP7-202.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:56:49 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/SP7-203.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/SP7-203.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/SP7-203.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/SP7-203.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/SP7-203.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:56:49 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/SP7-204.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/SP7-204.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/SP7-204.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/SP7-204.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/SP7-204.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:56:49 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-C2H2_6 PF13912.6 27 TRERF1-201 - 1129 2.6e-13 49.6 6.9 1 3 1.6e-08 2.6e-05 24.1 0.2 4 24 514 534 513 535 0.98 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 TRERF1-201 - 1129 2.6e-13 49.6 6.9 2 3 0.008 13 5.9 0.1 10 22 952 964 951 966 0.86 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 TRERF1-201 - 1129 2.6e-13 49.6 6.9 3 3 1.3e-07 0.00022 21.2 0.4 2 27 1015 1040 1014 1040 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 TRERF1-201 - 1129 2.5e-07 31.0 8.7 1 3 1.7e-05 0.028 15.3 0.1 2 23 513 534 512 535 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 TRERF1-201 - 1129 2.5e-07 31.0 8.7 2 3 0.16 2.5e+02 2.9 0.0 8 23 951 966 950 967 0.91 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 TRERF1-201 - 1129 2.5e-07 31.0 8.7 3 3 3.2e-05 0.052 14.4 1.2 1 23 1015 1037 1015 1038 0.92 C2H2-type zinc finger ELM2 PF01448.24 53 TRERF1-201 - 1129 4.2e-07 30.6 8.1 1 3 3.1 5.1e+03 -1.7 0.1 6 26 550 570 549 625 0.61 ELM2 domain ELM2 PF01448.24 53 TRERF1-201 - 1129 4.2e-07 30.6 8.1 2 3 3.7e-10 6e-07 30.1 0.0 1 53 698 752 698 752 0.81 ELM2 domain ELM2 PF01448.24 53 TRERF1-201 - 1129 4.2e-07 30.6 8.1 3 3 0.25 4.1e+02 1.8 2.2 11 35 866 886 852 919 0.80 ELM2 domain # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/TRERF1-201.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/TRERF1-201.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/TRERF1-201.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/TRERF1-201.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/TRERF1-201.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:56:50 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-C2H2_6 PF13912.6 27 TRERF1-202 - 1117 2.6e-16 59.2 5.4 1 3 1.7e-08 2.6e-05 24.1 0.2 4 24 514 534 513 535 0.98 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 TRERF1-202 - 1117 2.6e-16 59.2 5.4 2 3 2.6e-05 0.039 13.9 0.0 7 22 937 952 935 954 0.89 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 TRERF1-202 - 1117 2.6e-16 59.2 5.4 3 3 1.4e-07 0.00021 21.2 0.4 2 27 1003 1028 1002 1028 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 TRERF1-202 - 1117 6.6e-10 39.0 9.6 1 3 1.8e-05 0.027 15.3 0.1 2 23 513 534 512 535 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 TRERF1-202 - 1117 6.6e-10 39.0 9.6 2 3 0.00017 0.25 12.3 0.0 1 23 930 954 930 955 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 TRERF1-202 - 1117 6.6e-10 39.0 9.6 3 3 3.4e-05 0.051 14.4 1.2 1 23 1003 1025 1003 1026 0.92 C2H2-type zinc finger ELM2 PF01448.24 53 TRERF1-202 - 1117 4e-07 30.7 8.1 1 3 3.4 5e+03 -1.7 0.1 6 26 550 570 549 625 0.61 ELM2 domain ELM2 PF01448.24 53 TRERF1-202 - 1117 4e-07 30.7 8.1 2 3 4e-10 5.9e-07 30.1 0.0 1 53 698 752 698 752 0.81 ELM2 domain ELM2 PF01448.24 53 TRERF1-202 - 1117 4e-07 30.7 8.1 3 3 0.27 4e+02 1.9 2.2 11 35 866 886 852 919 0.80 ELM2 domain zf-C2H2 PF00096.26 23 TRERF1-202 - 1117 6.5e-07 29.5 18.7 1 4 1.1 1.7e+03 -0.2 0.8 12 22 392 402 388 402 0.84 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 TRERF1-202 - 1117 6.5e-07 29.5 18.7 2 4 2.3e-05 0.034 14.6 0.2 2 23 513 534 512 534 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 TRERF1-202 - 1117 6.5e-07 29.5 18.7 3 4 0.00037 0.56 10.8 0.0 1 23 930 954 930 954 0.95 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 TRERF1-202 - 1117 6.5e-07 29.5 18.7 4 4 3e-05 0.045 14.2 1.2 1 23 1003 1025 1003 1025 0.98 Zinc finger, C2H2 type # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/TRERF1-202.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/TRERF1-202.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/TRERF1-202.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/TRERF1-202.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/TRERF1-202.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:56:50 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-C2H2_6 PF13912.6 27 TRERF1-203 - 956 1.5e-16 60.0 5.4 1 3 1.6e-08 2.2e-05 24.3 0.2 4 24 353 373 352 374 0.98 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 TRERF1-203 - 956 1.5e-16 60.0 5.4 2 3 2.4e-05 0.033 14.2 0.0 7 22 776 791 774 793 0.89 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 TRERF1-203 - 956 1.5e-16 60.0 5.4 3 3 1.3e-07 0.00018 21.4 0.4 2 27 842 867 841 867 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 TRERF1-203 - 956 1.4e-08 34.9 14.6 1 3 1.7e-05 0.023 15.5 0.1 2 23 352 373 351 374 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 TRERF1-203 - 956 1.4e-08 34.9 14.6 2 3 0.00015 0.21 12.5 0.0 1 23 769 793 769 794 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 TRERF1-203 - 956 1.4e-08 34.9 14.6 3 3 3.1e-05 0.043 14.7 1.2 1 23 842 864 842 865 0.92 C2H2-type zinc finger zf-C2H2 PF00096.26 23 TRERF1-203 - 956 3.3e-07 30.4 18.7 1 5 9.2 1.3e+04 -3.0 0.1 13 21 93 101 91 102 0.83 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 TRERF1-203 - 956 3.3e-07 30.4 18.7 2 5 0.93 1.3e+03 0.2 0.7 11 22 230 241 226 241 0.83 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 TRERF1-203 - 956 3.3e-07 30.4 18.7 3 5 2.1e-05 0.029 14.8 0.2 2 23 352 373 351 373 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 TRERF1-203 - 956 3.3e-07 30.4 18.7 4 5 0.00034 0.47 11.0 0.0 1 23 769 793 769 793 0.95 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 TRERF1-203 - 956 3.3e-07 30.4 18.7 5 5 2.7e-05 0.038 14.5 1.2 1 23 842 864 842 864 0.98 Zinc finger, C2H2 type ELM2 PF01448.24 53 TRERF1-203 - 956 4.9e-07 30.4 0.0 1 3 3 4.2e+03 -1.4 0.1 6 26 389 409 388 464 0.61 ELM2 domain ELM2 PF01448.24 53 TRERF1-203 - 956 4.9e-07 30.4 0.0 2 3 3.6e-10 4.9e-07 30.4 0.0 1 53 537 591 537 591 0.81 ELM2 domain ELM2 PF01448.24 53 TRERF1-203 - 956 4.9e-07 30.4 0.0 3 3 0.24 3.4e+02 2.1 2.2 11 35 705 725 691 758 0.80 ELM2 domain # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/TRERF1-203.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/TRERF1-203.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/TRERF1-203.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/TRERF1-203.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/TRERF1-203.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:56:51 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-C2H2_6 PF13912.6 27 TRERF1-204 - 1200 3.5e-16 58.8 5.4 1 3 1.7e-08 2.8e-05 24.0 0.2 4 24 514 534 513 535 0.98 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 TRERF1-204 - 1200 3.5e-16 58.8 5.4 2 3 2.6e-05 0.043 13.8 0.0 7 22 1020 1035 1018 1037 0.89 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 TRERF1-204 - 1200 3.5e-16 58.8 5.4 3 3 1.4e-07 0.00023 21.1 0.4 2 27 1086 1111 1085 1111 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 TRERF1-204 - 1200 9.2e-10 38.5 9.6 1 3 1.8e-05 0.03 15.2 0.1 2 23 513 534 512 535 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 TRERF1-204 - 1200 9.2e-10 38.5 9.6 2 3 0.00017 0.28 12.2 0.0 1 23 1013 1037 1013 1038 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 TRERF1-204 - 1200 9.2e-10 38.5 9.6 3 3 3.4e-05 0.055 14.3 1.2 1 23 1086 1108 1086 1109 0.92 C2H2-type zinc finger ELM2 PF01448.24 53 TRERF1-204 - 1200 4.3e-07 30.6 7.9 1 3 3.4 5.5e+03 -1.8 0.1 6 26 633 653 632 708 0.61 ELM2 domain ELM2 PF01448.24 53 TRERF1-204 - 1200 4.3e-07 30.6 7.9 2 3 3.9e-10 6.4e-07 30.0 0.0 1 53 781 835 781 835 0.81 ELM2 domain ELM2 PF01448.24 53 TRERF1-204 - 1200 4.3e-07 30.6 7.9 3 3 0.24 4e+02 1.9 2.0 11 35 949 969 935 1001 0.80 ELM2 domain zf-C2H2 PF00096.26 23 TRERF1-204 - 1200 9.3e-07 29.0 18.7 1 4 1.1 1.9e+03 -0.3 0.8 12 22 392 402 388 402 0.84 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 TRERF1-204 - 1200 9.3e-07 29.0 18.7 2 4 2.3e-05 0.037 14.5 0.2 2 23 513 534 512 534 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 TRERF1-204 - 1200 9.3e-07 29.0 18.7 3 4 0.00037 0.61 10.7 0.0 1 23 1013 1037 1013 1037 0.95 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 TRERF1-204 - 1200 9.3e-07 29.0 18.7 4 4 3e-05 0.048 14.1 1.2 1 23 1086 1108 1086 1108 0.98 Zinc finger, C2H2 type # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/TRERF1-204.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/TRERF1-204.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/TRERF1-204.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/TRERF1-204.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/TRERF1-204.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:56:51 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-C2H2_6 PF13912.6 27 TRERF1-205 - 1220 3.7e-16 58.7 5.4 1 3 1.7e-08 2.8e-05 24.0 0.2 4 24 514 534 513 535 0.98 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 TRERF1-205 - 1220 3.7e-16 58.7 5.4 2 3 2.7e-05 0.043 13.8 0.0 7 22 1040 1055 1038 1057 0.89 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 TRERF1-205 - 1220 3.7e-16 58.7 5.4 3 3 1.4e-07 0.00024 21.0 0.4 2 27 1106 1131 1105 1131 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 TRERF1-205 - 1220 9.9e-10 38.4 9.6 1 3 1.9e-05 0.03 15.1 0.1 2 23 513 534 512 535 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 TRERF1-205 - 1220 9.9e-10 38.4 9.6 2 3 0.00017 0.28 12.1 0.0 1 23 1033 1057 1033 1058 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 TRERF1-205 - 1220 9.9e-10 38.4 9.6 3 3 3.5e-05 0.056 14.3 1.2 1 23 1106 1128 1106 1129 0.92 C2H2-type zinc finger ELM2 PF01448.24 53 TRERF1-205 - 1220 5.1e-07 30.3 8.2 1 3 3.2 5.3e+03 -1.7 0.1 6 26 653 673 651 728 0.62 ELM2 domain ELM2 PF01448.24 53 TRERF1-205 - 1220 5.1e-07 30.3 8.2 2 3 4e-10 6.5e-07 30.0 0.0 1 53 801 855 801 855 0.81 ELM2 domain ELM2 PF01448.24 53 TRERF1-205 - 1220 5.1e-07 30.3 8.2 3 3 0.25 4e+02 1.8 2.0 11 35 969 989 955 1021 0.80 ELM2 domain zf-C2H2 PF00096.26 23 TRERF1-205 - 1220 1e-06 28.9 18.7 1 4 1.2 1.9e+03 -0.3 0.8 12 22 392 402 388 402 0.84 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 TRERF1-205 - 1220 1e-06 28.9 18.7 2 4 2.3e-05 0.038 14.5 0.2 2 23 513 534 512 534 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 TRERF1-205 - 1220 1e-06 28.9 18.7 3 4 0.00038 0.62 10.6 0.0 1 23 1033 1057 1033 1057 0.95 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 TRERF1-205 - 1220 1e-06 28.9 18.7 4 4 3e-05 0.049 14.1 1.2 1 23 1106 1128 1106 1128 0.98 Zinc finger, C2H2 type # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/TRERF1-205.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/TRERF1-205.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/TRERF1-205.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/TRERF1-205.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/TRERF1-205.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:56:52 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-C2H2_2 PF12756.7 101 TSHZ1-201 - 1032 2.2e-12 47.2 20.1 1 5 0.00031 0.33 11.3 0.2 50 85 200 235 178 246 0.79 C2H2 type zinc-finger (2 copies) zf-C2H2_2 PF12756.7 101 TSHZ1-201 - 1032 2.2e-12 47.2 20.1 2 5 4.7e-06 0.0049 17.2 1.0 48 77 259 288 245 307 0.84 C2H2 type zinc-finger (2 copies) zf-C2H2_2 PF12756.7 101 TSHZ1-201 - 1032 2.2e-12 47.2 20.1 3 5 0.00021 0.22 11.8 0.4 49 78 370 398 361 410 0.80 C2H2 type zinc-finger (2 copies) zf-C2H2_2 PF12756.7 101 TSHZ1-201 - 1032 2.2e-12 47.2 20.1 4 5 7.5 7.9e+03 -2.7 0.0 28 49 586 607 582 610 0.84 C2H2 type zinc-finger (2 copies) zf-C2H2_2 PF12756.7 101 TSHZ1-201 - 1032 2.2e-12 47.2 20.1 5 5 3.9e-06 0.0041 17.4 0.8 2 77 927 1017 924 1025 0.80 C2H2 type zinc-finger (2 copies) zf-C2H2 PF00096.26 23 TSHZ1-201 - 1032 9.6e-11 41.5 28.9 1 5 3.6e-05 0.038 14.5 0.1 1 22 201 222 201 225 0.91 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 TSHZ1-201 - 1032 9.6e-11 41.5 28.9 2 5 3.5e-05 0.037 14.5 1.3 2 23 263 286 262 286 0.90 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 TSHZ1-201 - 1032 9.6e-11 41.5 28.9 3 5 0.058 61 4.4 0.4 2 23 372 395 371 395 0.89 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 TSHZ1-201 - 1032 9.6e-11 41.5 28.9 4 5 0.0006 0.63 10.6 0.7 1 23 925 947 925 947 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 TSHZ1-201 - 1032 9.6e-11 41.5 28.9 5 5 4.6e-05 0.049 14.1 2.9 1 23 992 1015 992 1015 0.97 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 TSHZ1-201 - 1032 8.6e-10 38.6 23.7 1 5 0.0016 1.7 9.7 0.0 1 21 201 221 201 222 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 TSHZ1-201 - 1032 8.6e-10 38.6 23.7 2 5 7.3e-05 0.077 13.9 0.4 2 22 263 283 262 285 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 TSHZ1-201 - 1032 8.6e-10 38.6 23.7 3 5 0.049 52 5.1 0.2 2 20 372 390 371 392 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 TSHZ1-201 - 1032 8.6e-10 38.6 23.7 4 5 0.0048 5.1 8.2 0.5 1 23 925 947 925 948 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 TSHZ1-201 - 1032 8.6e-10 38.6 23.7 5 5 6.3e-05 0.067 14.1 2.8 1 24 992 1015 992 1015 0.94 C2H2-type zinc finger # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/TSHZ1-201.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/TSHZ1-201.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/TSHZ1-201.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/TSHZ1-201.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/TSHZ1-201.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:56:52 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/TSHZ1-202.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/TSHZ1-202.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/TSHZ1-202.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/TSHZ1-202.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/TSHZ1-202.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:56:52 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/TSHZ1-203.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/TSHZ1-203.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/TSHZ1-203.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/TSHZ1-203.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/TSHZ1-203.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:56:53 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-C2H2_2 PF12756.7 101 TSHZ1-204 - 1077 2.3e-12 47.1 19.9 1 5 0.00031 0.35 11.2 0.2 50 85 245 280 223 291 0.79 C2H2 type zinc-finger (2 copies) zf-C2H2_2 PF12756.7 101 TSHZ1-204 - 1077 2.3e-12 47.1 19.9 2 5 4.6e-06 0.0052 17.1 1.0 48 77 304 333 290 352 0.84 C2H2 type zinc-finger (2 copies) zf-C2H2_2 PF12756.7 101 TSHZ1-204 - 1077 2.3e-12 47.1 19.9 3 5 0.00021 0.24 11.8 0.4 49 78 415 443 406 455 0.80 C2H2 type zinc-finger (2 copies) zf-C2H2_2 PF12756.7 101 TSHZ1-204 - 1077 2.3e-12 47.1 19.9 4 5 7.4 8.3e+03 -2.8 0.0 28 49 631 652 627 655 0.84 C2H2 type zinc-finger (2 copies) zf-C2H2_2 PF12756.7 101 TSHZ1-204 - 1077 2.3e-12 47.1 19.9 5 5 3.7e-06 0.0042 17.4 0.8 2 77 972 1062 969 1070 0.80 C2H2 type zinc-finger (2 copies) zf-C2H2 PF00096.26 23 TSHZ1-204 - 1077 1.2e-10 41.2 28.9 1 5 3.6e-05 0.04 14.4 0.1 1 22 246 267 246 270 0.91 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 TSHZ1-204 - 1077 1.2e-10 41.2 28.9 2 5 3.4e-05 0.038 14.4 1.3 2 23 308 331 307 331 0.90 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 TSHZ1-204 - 1077 1.2e-10 41.2 28.9 3 5 0.057 64 4.3 0.4 2 23 417 440 416 440 0.89 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 TSHZ1-204 - 1077 1.2e-10 41.2 28.9 4 5 0.00059 0.66 10.5 0.7 1 23 970 992 970 992 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 TSHZ1-204 - 1077 1.2e-10 41.2 28.9 5 5 4.6e-05 0.051 14.0 2.9 1 23 1037 1060 1037 1060 0.97 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 TSHZ1-204 - 1077 1.1e-09 38.3 23.7 1 5 0.0016 1.8 9.6 0.0 1 21 246 266 246 267 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 TSHZ1-204 - 1077 1.1e-09 38.3 23.7 2 5 7.2e-05 0.081 13.8 0.4 2 22 308 328 307 330 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 TSHZ1-204 - 1077 1.1e-09 38.3 23.7 3 5 0.049 54 5.0 0.2 2 20 417 435 416 437 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 TSHZ1-204 - 1077 1.1e-09 38.3 23.7 4 5 0.0048 5.3 8.1 0.5 1 23 970 992 970 993 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 TSHZ1-204 - 1077 1.1e-09 38.3 23.7 5 5 6.2e-05 0.07 14.0 2.8 1 24 1037 1060 1037 1060 0.94 C2H2-type zinc finger # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/TSHZ1-204.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/TSHZ1-204.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/TSHZ1-204.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/TSHZ1-204.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/TSHZ1-204.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:56:53 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-C2H2_2 PF12756.7 101 TSHZ1-205 - 1032 2.2e-12 47.2 20.1 1 5 0.00031 0.33 11.3 0.2 50 85 200 235 178 246 0.79 C2H2 type zinc-finger (2 copies) zf-C2H2_2 PF12756.7 101 TSHZ1-205 - 1032 2.2e-12 47.2 20.1 2 5 4.7e-06 0.0049 17.2 1.0 48 77 259 288 245 307 0.84 C2H2 type zinc-finger (2 copies) zf-C2H2_2 PF12756.7 101 TSHZ1-205 - 1032 2.2e-12 47.2 20.1 3 5 0.00021 0.22 11.8 0.4 49 78 370 398 361 410 0.80 C2H2 type zinc-finger (2 copies) zf-C2H2_2 PF12756.7 101 TSHZ1-205 - 1032 2.2e-12 47.2 20.1 4 5 7.5 7.9e+03 -2.7 0.0 28 49 586 607 582 610 0.84 C2H2 type zinc-finger (2 copies) zf-C2H2_2 PF12756.7 101 TSHZ1-205 - 1032 2.2e-12 47.2 20.1 5 5 3.9e-06 0.0041 17.4 0.8 2 77 927 1017 924 1025 0.80 C2H2 type zinc-finger (2 copies) zf-C2H2 PF00096.26 23 TSHZ1-205 - 1032 9.6e-11 41.5 28.9 1 5 3.6e-05 0.038 14.5 0.1 1 22 201 222 201 225 0.91 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 TSHZ1-205 - 1032 9.6e-11 41.5 28.9 2 5 3.5e-05 0.037 14.5 1.3 2 23 263 286 262 286 0.90 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 TSHZ1-205 - 1032 9.6e-11 41.5 28.9 3 5 0.058 61 4.4 0.4 2 23 372 395 371 395 0.89 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 TSHZ1-205 - 1032 9.6e-11 41.5 28.9 4 5 0.0006 0.63 10.6 0.7 1 23 925 947 925 947 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 TSHZ1-205 - 1032 9.6e-11 41.5 28.9 5 5 4.6e-05 0.049 14.1 2.9 1 23 992 1015 992 1015 0.97 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 TSHZ1-205 - 1032 8.6e-10 38.6 23.7 1 5 0.0016 1.7 9.7 0.0 1 21 201 221 201 222 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 TSHZ1-205 - 1032 8.6e-10 38.6 23.7 2 5 7.3e-05 0.077 13.9 0.4 2 22 263 283 262 285 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 TSHZ1-205 - 1032 8.6e-10 38.6 23.7 3 5 0.049 52 5.1 0.2 2 20 372 390 371 392 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 TSHZ1-205 - 1032 8.6e-10 38.6 23.7 4 5 0.0048 5.1 8.2 0.5 1 23 925 947 925 948 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 TSHZ1-205 - 1032 8.6e-10 38.6 23.7 5 5 6.3e-05 0.067 14.1 2.8 1 24 992 1015 992 1015 0.94 C2H2-type zinc finger # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/TSHZ1-205.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/TSHZ1-205.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/TSHZ1-205.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/TSHZ1-205.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/TSHZ1-205.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:56:54 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-C2H2_4 PF13894.6 24 WIZ-201 - 794 3.6e-14 52.2 18.7 1 5 2.4e-05 0.039 14.8 0.1 2 23 81 102 81 103 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 WIZ-201 - 794 3.6e-14 52.2 18.7 2 5 2.5e-05 0.04 14.8 0.4 2 23 187 208 186 209 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 WIZ-201 - 794 3.6e-14 52.2 18.7 3 5 2.5e-05 0.04 14.8 0.4 2 23 371 392 370 393 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 WIZ-201 - 794 3.6e-14 52.2 18.7 4 5 0.0001 0.17 12.8 0.4 2 23 541 562 540 563 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 WIZ-201 - 794 3.6e-14 52.2 18.7 5 5 0.024 39 5.5 0.1 2 23 740 765 739 766 0.89 C2H2-type zinc finger zf-C2H2 PF00096.26 23 WIZ-201 - 794 1.3e-07 31.7 24.8 1 5 0.0004 0.66 10.5 0.1 2 23 81 102 80 102 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 WIZ-201 - 794 1.3e-07 31.7 24.8 2 5 4.4e-05 0.072 13.6 0.4 2 23 187 208 186 208 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 WIZ-201 - 794 1.3e-07 31.7 24.8 3 5 4.4e-05 0.072 13.6 0.4 2 23 371 392 370 392 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 WIZ-201 - 794 1.3e-07 31.7 24.8 4 5 0.00071 1.2 9.8 0.5 3 23 542 562 541 562 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 WIZ-201 - 794 1.3e-07 31.7 24.8 5 5 1 1.6e+03 -0.1 0.1 15 23 757 765 751 767 0.72 Zinc finger, C2H2 type zf-BED PF02892.15 44 WIZ-201 - 794 1.8e-07 31.1 3.5 1 5 0.0055 8.9 6.4 0.0 18 40 81 104 72 106 0.91 BED zinc finger zf-BED PF02892.15 44 WIZ-201 - 794 1.8e-07 31.1 3.5 2 5 0.00096 1.6 8.8 0.0 17 41 186 211 180 212 0.91 BED zinc finger zf-BED PF02892.15 44 WIZ-201 - 794 1.8e-07 31.1 3.5 3 5 0.0012 2 8.5 0.0 17 41 370 395 367 396 0.92 BED zinc finger zf-BED PF02892.15 44 WIZ-201 - 794 1.8e-07 31.1 3.5 4 5 0.19 3.1e+02 1.5 0.8 14 41 537 565 529 566 0.86 BED zinc finger zf-BED PF02892.15 44 WIZ-201 - 794 1.8e-07 31.1 3.5 5 5 0.41 6.7e+02 0.4 0.0 18 29 740 751 737 768 0.68 BED zinc finger zf-FCS PF06467.14 41 WIZ-201 - 794 4.4e-07 29.7 2.6 1 5 0.32 5.2e+02 0.7 0.0 5 15 81 91 78 97 0.80 MYM-type Zinc finger with FCS sequence motif zf-FCS PF06467.14 41 WIZ-201 - 794 4.4e-07 29.7 2.6 2 5 0.00053 0.86 9.6 0.0 3 20 185 203 183 214 0.77 MYM-type Zinc finger with FCS sequence motif zf-FCS PF06467.14 41 WIZ-201 - 794 4.4e-07 29.7 2.6 3 5 0.00069 1.1 9.2 0.0 4 20 370 387 368 398 0.77 MYM-type Zinc finger with FCS sequence motif zf-FCS PF06467.14 41 WIZ-201 - 794 4.4e-07 29.7 2.6 4 5 0.0058 9.4 6.3 0.1 4 18 540 554 537 560 0.88 MYM-type Zinc finger with FCS sequence motif zf-FCS PF06467.14 41 WIZ-201 - 794 4.4e-07 29.7 2.6 5 5 3.9 6.3e+03 -2.8 0.1 3 13 738 748 737 751 0.71 MYM-type Zinc finger with FCS sequence motif # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/WIZ-201.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/WIZ-201.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/WIZ-201.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/WIZ-201.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/WIZ-201.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:56:54 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-C2H2_4 PF13894.6 24 WIZ-202 - 832 3.3e-13 49.3 23.4 1 5 1e-05 0.017 15.9 1.0 2 23 52 73 51 74 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 WIZ-202 - 832 3.3e-13 49.3 23.4 2 5 2.6e-05 0.042 14.7 0.4 2 23 225 246 224 247 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 WIZ-202 - 832 3.3e-13 49.3 23.4 3 5 2.6e-05 0.042 14.7 0.4 2 23 409 430 408 431 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 WIZ-202 - 832 3.3e-13 49.3 23.4 4 5 0.00011 0.18 12.8 0.4 2 23 579 600 578 601 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 WIZ-202 - 832 3.3e-13 49.3 23.4 5 5 0.025 41 5.4 0.1 2 23 778 803 777 804 0.89 C2H2-type zinc finger zf-C2H2 PF00096.26 23 WIZ-202 - 832 8.3e-10 38.6 22.8 1 5 1.9e-05 0.031 14.7 1.0 2 23 52 73 51 73 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 WIZ-202 - 832 8.3e-10 38.6 22.8 2 5 4.7e-05 0.076 13.5 0.4 2 23 225 246 224 246 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 WIZ-202 - 832 8.3e-10 38.6 22.8 3 5 4.7e-05 0.076 13.5 0.4 2 23 409 430 408 430 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 WIZ-202 - 832 8.3e-10 38.6 22.8 4 5 0.00075 1.2 9.7 0.5 3 23 580 600 579 600 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 WIZ-202 - 832 8.3e-10 38.6 22.8 5 5 1.1 1.7e+03 -0.2 0.1 15 23 795 803 789 805 0.72 Zinc finger, C2H2 type # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/WIZ-202.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/WIZ-202.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/WIZ-202.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/WIZ-202.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/WIZ-202.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:56:55 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-C2H2_4 PF13894.6 24 WIZ-203 - 965 3.5e-17 61.6 28.0 1 6 1.3e-05 0.02 15.7 1.0 2 23 52 73 51 74 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 WIZ-203 - 965 3.5e-17 61.6 28.0 2 6 7.5e-06 0.011 16.5 0.1 3 23 226 246 225 247 0.97 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 WIZ-203 - 965 3.5e-17 61.6 28.0 3 6 3.4e-05 0.05 14.5 0.4 2 23 358 379 357 380 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 WIZ-203 - 965 3.5e-17 61.6 28.0 4 6 3.4e-05 0.05 14.5 0.4 2 23 542 563 541 564 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 WIZ-203 - 965 3.5e-17 61.6 28.0 5 6 0.00014 0.21 12.5 0.4 2 23 712 733 711 734 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 WIZ-203 - 965 3.5e-17 61.6 28.0 6 6 0.033 49 5.1 0.1 2 23 911 936 910 937 0.89 C2H2-type zinc finger zf-C2H2 PF00096.26 23 WIZ-203 - 965 2.6e-10 40.2 26.4 1 6 2.4e-05 0.036 14.5 1.0 2 23 52 73 51 73 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 WIZ-203 - 965 2.6e-10 40.2 26.4 2 6 0.03 46 4.8 0.1 3 23 226 246 224 246 0.94 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 WIZ-203 - 965 2.6e-10 40.2 26.4 3 6 6e-05 0.09 13.3 0.4 2 23 358 379 357 379 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 WIZ-203 - 965 2.6e-10 40.2 26.4 4 6 6e-05 0.09 13.3 0.4 2 23 542 563 541 563 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 WIZ-203 - 965 2.6e-10 40.2 26.4 5 6 0.00096 1.4 9.5 0.5 3 23 713 733 712 733 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 WIZ-203 - 965 2.6e-10 40.2 26.4 6 6 1.4 2e+03 -0.4 0.1 15 23 928 936 922 938 0.72 Zinc finger, C2H2 type # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/WIZ-203.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/WIZ-203.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/WIZ-203.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/WIZ-203.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/WIZ-203.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:56:55 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-C2H2_4 PF13894.6 24 WIZ-204 - 255 6.3e-08 32.8 1.2 1 2 1.2e-05 0.043 14.7 0.2 2 23 56 77 55 78 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 WIZ-204 - 255 6.3e-08 32.8 1.2 2 2 2.7e-06 0.0097 16.7 0.1 2 23 124 145 124 146 0.96 C2H2-type zinc finger # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/WIZ-204.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/WIZ-204.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/WIZ-204.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/WIZ-204.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/WIZ-204.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:56:55 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/WIZ-205.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/WIZ-205.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/WIZ-205.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/WIZ-205.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/WIZ-205.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:56:56 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-C2H2_4 PF13894.6 24 WIZ-206 - 835 3.3e-13 49.2 23.4 1 5 1e-05 0.017 15.9 1.0 2 23 55 76 54 77 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 WIZ-206 - 835 3.3e-13 49.2 23.4 2 5 2.6e-05 0.042 14.7 0.4 2 23 228 249 227 250 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 WIZ-206 - 835 3.3e-13 49.2 23.4 3 5 2.6e-05 0.042 14.7 0.4 2 23 412 433 411 434 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 WIZ-206 - 835 3.3e-13 49.2 23.4 4 5 0.00011 0.18 12.7 0.4 2 23 582 603 581 604 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 WIZ-206 - 835 3.3e-13 49.2 23.4 5 5 0.026 42 5.4 0.1 2 23 781 806 780 807 0.89 C2H2-type zinc finger zf-C2H2 PF00096.26 23 WIZ-206 - 835 8.5e-10 38.6 22.8 1 5 1.9e-05 0.031 14.7 1.0 2 23 55 76 54 76 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 WIZ-206 - 835 8.5e-10 38.6 22.8 2 5 4.7e-05 0.077 13.5 0.4 2 23 228 249 227 249 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 WIZ-206 - 835 8.5e-10 38.6 22.8 3 5 4.7e-05 0.077 13.5 0.4 2 23 412 433 411 433 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 WIZ-206 - 835 8.5e-10 38.6 22.8 4 5 0.00075 1.2 9.7 0.5 3 23 583 603 582 603 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 WIZ-206 - 835 8.5e-10 38.6 22.8 5 5 1.1 1.7e+03 -0.2 0.1 15 23 798 806 792 808 0.72 Zinc finger, C2H2 type # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/WIZ-206.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/WIZ-206.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/WIZ-206.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/WIZ-206.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/WIZ-206.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:56:56 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-C2H2_4 PF13894.6 24 WIZ-207 - 968 3.6e-17 61.6 28.0 1 6 1.3e-05 0.02 15.7 1.0 2 23 55 76 54 77 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 WIZ-207 - 968 3.6e-17 61.6 28.0 2 6 7.6e-06 0.011 16.5 0.1 3 23 229 249 228 250 0.97 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 WIZ-207 - 968 3.6e-17 61.6 28.0 3 6 3.4e-05 0.05 14.5 0.4 2 23 361 382 360 383 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 WIZ-207 - 968 3.6e-17 61.6 28.0 4 6 3.4e-05 0.05 14.5 0.4 2 23 545 566 544 567 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 WIZ-207 - 968 3.6e-17 61.6 28.0 5 6 0.00014 0.21 12.5 0.4 2 23 715 736 714 737 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 WIZ-207 - 968 3.6e-17 61.6 28.0 6 6 0.033 49 5.1 0.1 2 23 914 939 913 940 0.89 C2H2-type zinc finger zf-C2H2 PF00096.26 23 WIZ-207 - 968 2.6e-10 40.1 26.4 1 6 2.4e-05 0.036 14.5 1.0 2 23 55 76 54 76 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 WIZ-207 - 968 2.6e-10 40.1 26.4 2 6 0.031 46 4.8 0.1 3 23 229 249 227 249 0.94 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 WIZ-207 - 968 2.6e-10 40.1 26.4 3 6 6.1e-05 0.091 13.3 0.4 2 23 361 382 360 382 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 WIZ-207 - 968 2.6e-10 40.1 26.4 4 6 6.1e-05 0.091 13.3 0.4 2 23 545 566 544 566 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 WIZ-207 - 968 2.6e-10 40.1 26.4 5 6 0.00097 1.4 9.5 0.5 3 23 716 736 715 736 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 WIZ-207 - 968 2.6e-10 40.1 26.4 6 6 1.4 2e+03 -0.4 0.1 15 23 931 939 925 941 0.72 Zinc finger, C2H2 type # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/WIZ-207.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/WIZ-207.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/WIZ-207.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/WIZ-207.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/WIZ-207.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:56:56 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/WIZ-208.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/WIZ-208.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/WIZ-208.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/WIZ-208.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/WIZ-208.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:56:57 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-C2H2_4 PF13894.6 24 WIZ-209 - 1699 3.4e-24 83.5 52.8 1 11 0.00018 0.41 11.6 1.6 1 23 315 337 315 338 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 WIZ-209 - 1699 3.4e-24 83.5 52.8 2 11 0.00083 1.9 9.6 0.0 2 23 353 374 352 375 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 WIZ-209 - 1699 3.4e-24 83.5 52.8 3 11 0.015 34 5.6 0.3 2 23 402 423 401 424 0.88 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 WIZ-209 - 1699 3.4e-24 83.5 52.8 4 11 0.013 28 5.9 0.1 2 24 465 487 464 487 0.78 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 WIZ-209 - 1699 3.4e-24 83.5 52.8 5 11 0.00018 0.41 11.6 0.2 2 23 750 771 749 772 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 WIZ-209 - 1699 3.4e-24 83.5 52.8 6 11 4.1e-05 0.093 13.6 0.1 2 23 818 839 818 840 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 WIZ-209 - 1699 3.4e-24 83.5 52.8 7 11 1.7e-05 0.037 14.9 1.0 2 23 919 940 918 941 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 WIZ-209 - 1699 3.4e-24 83.5 52.8 8 11 4.2e-05 0.095 13.6 0.4 2 23 1092 1113 1091 1114 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 WIZ-209 - 1699 3.4e-24 83.5 52.8 9 11 4.2e-05 0.095 13.6 0.4 2 23 1276 1297 1275 1298 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 WIZ-209 - 1699 3.4e-24 83.5 52.8 10 11 0.00018 0.4 11.7 0.4 2 23 1446 1467 1445 1468 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 WIZ-209 - 1699 3.4e-24 83.5 52.8 11 11 0.042 94 4.3 0.1 2 23 1645 1670 1644 1671 0.89 C2H2-type zinc finger zf-C2H2 PF00096.26 23 WIZ-209 - 1699 4.5e-19 67.8 49.1 1 11 0.00036 0.81 10.3 1.2 1 23 315 337 315 337 0.93 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 WIZ-209 - 1699 4.5e-19 67.8 49.1 2 11 1.1e-05 0.026 15.0 0.0 3 23 354 374 352 374 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 WIZ-209 - 1699 4.5e-19 67.8 49.1 3 11 0.034 77 4.0 0.2 2 23 402 423 401 423 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 WIZ-209 - 1699 4.5e-19 67.8 49.1 4 11 0.003 6.7 7.4 0.0 3 23 466 487 465 487 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 WIZ-209 - 1699 4.5e-19 67.8 49.1 5 11 0.04 90 3.8 0.2 2 23 750 771 750 771 0.95 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 WIZ-209 - 1699 4.5e-19 67.8 49.1 6 11 0.00069 1.5 9.4 0.1 2 23 818 839 817 839 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 WIZ-209 - 1699 4.5e-19 67.8 49.1 7 11 3e-05 0.068 13.7 1.0 2 23 919 940 918 940 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 WIZ-209 - 1699 4.5e-19 67.8 49.1 8 11 7.5e-05 0.17 12.4 0.4 2 23 1092 1113 1091 1113 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 WIZ-209 - 1699 4.5e-19 67.8 49.1 9 11 7.5e-05 0.17 12.4 0.4 2 23 1276 1297 1275 1297 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 WIZ-209 - 1699 4.5e-19 67.8 49.1 10 11 0.0012 2.7 8.6 0.5 3 23 1447 1467 1446 1467 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 WIZ-209 - 1699 4.5e-19 67.8 49.1 11 11 1.9 4.2e+03 -1.4 0.1 16 23 1663 1670 1658 1672 0.69 Zinc finger, C2H2 type # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/WIZ-209.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/WIZ-209.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/WIZ-209.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/WIZ-209.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/WIZ-209.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:56:57 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-C2H2_4 PF13894.6 24 WIZ-210 - 982 7.1e-17 60.7 26.7 1 6 2.8e-05 0.05 14.5 0.1 2 23 44 65 44 66 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 WIZ-210 - 982 7.1e-17 60.7 26.7 2 6 1.1e-05 0.02 15.7 1.0 2 23 202 223 201 224 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 WIZ-210 - 982 7.1e-17 60.7 26.7 3 6 2.9e-05 0.051 14.4 0.4 2 23 375 396 374 397 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 WIZ-210 - 982 7.1e-17 60.7 26.7 4 6 2.9e-05 0.051 14.4 0.4 2 23 559 580 558 581 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 WIZ-210 - 982 7.1e-17 60.7 26.7 5 6 0.00012 0.21 12.5 0.4 2 23 729 750 728 751 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 WIZ-210 - 982 7.1e-17 60.7 26.7 6 6 0.028 50 5.1 0.1 2 23 928 953 927 954 0.89 C2H2-type zinc finger zf-C2H2 PF00096.26 23 WIZ-210 - 982 5.2e-12 45.5 26.3 1 6 0.00047 0.84 10.2 0.1 2 23 44 65 43 65 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 WIZ-210 - 982 5.2e-12 45.5 26.3 2 6 2.1e-05 0.037 14.5 1.0 2 23 202 223 201 223 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 WIZ-210 - 982 5.2e-12 45.5 26.3 3 6 5.1e-05 0.092 13.2 0.4 2 23 375 396 374 396 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 WIZ-210 - 982 5.2e-12 45.5 26.3 4 6 5.1e-05 0.092 13.2 0.4 2 23 559 580 558 580 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 WIZ-210 - 982 5.2e-12 45.5 26.3 5 6 0.00082 1.5 9.5 0.5 3 23 730 750 729 750 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 WIZ-210 - 982 5.2e-12 45.5 26.3 6 6 1.1 2.1e+03 -0.5 0.1 15 23 945 953 939 955 0.72 Zinc finger, C2H2 type # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/WIZ-210.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/WIZ-210.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/WIZ-210.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/WIZ-210.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/WIZ-210.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:56:58 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- WT1 PF02165.15 295 WT1-201 - 449 5.9e-150 498.4 16.2 1 1 1.1e-150 1.5e-147 490.6 16.2 1 295 1 321 1 321 0.95 Wilm's tumour protein zf-H2C2_2 PF13465.6 26 WT1-201 - 449 1.2e-16 60.3 30.6 1 4 1.4 1.9e+03 -0.4 0.5 10 24 317 334 314 336 0.68 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 WT1-201 - 449 1.2e-16 60.3 30.6 2 4 2.9e-09 4e-06 27.0 2.6 1 25 339 365 339 366 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 WT1-201 - 449 1.2e-16 60.3 30.6 3 4 5e-10 7e-07 29.4 2.9 2 25 370 393 369 394 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 WT1-201 - 449 1.2e-16 60.3 30.6 4 4 9e-07 0.0012 19.1 3.0 1 25 397 426 397 427 0.91 Zinc-finger double domain zf-C2H2 PF00096.26 23 WT1-201 - 449 1.4e-14 53.6 38.4 1 4 0.00088 1.2 9.7 3.4 1 23 323 347 323 347 0.93 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 WT1-201 - 449 1.4e-14 53.6 38.4 2 4 1.4e-08 1.9e-05 24.8 3.1 1 23 353 377 353 377 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 WT1-201 - 449 1.4e-14 53.6 38.4 3 4 1.5e-07 0.00021 21.6 6.8 1 23 383 405 383 405 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 WT1-201 - 449 1.4e-14 53.6 38.4 4 4 1.5e-05 0.021 15.3 1.9 1 23 414 438 414 438 0.94 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 WT1-201 - 449 5.2e-07 30.0 33.2 1 4 0.024 32 5.7 2.4 1 23 323 347 323 348 0.89 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 WT1-201 - 449 5.2e-07 30.0 33.2 2 4 4.5e-06 0.0061 17.3 1.8 1 23 353 377 353 378 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 WT1-201 - 449 5.2e-07 30.0 33.2 3 4 3.9e-05 0.054 14.4 4.7 1 23 383 405 383 406 0.97 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 WT1-201 - 449 5.2e-07 30.0 33.2 4 4 0.0015 2 9.4 1.8 1 23 414 438 414 439 0.88 C2H2-type zinc finger # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/WT1-201.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/WT1-201.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/WT1-201.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/WT1-201.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/WT1-201.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:56:58 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- WT1 PF02165.15 295 WT1-202 - 249 1.7e-124 414.8 8.0 1 1 1.1e-128 1.9e-124 414.7 8.0 1 239 1 249 1 249 0.98 Wilm's tumour protein # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/WT1-202.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/WT1-202.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/WT1-202.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/WT1-202.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/WT1-202.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:56:58 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- WT1 PF02165.15 295 WT1-203 - 302 2.3e-85 286.4 10.4 1 2 1.1e-62 1.8e-59 201.4 4.2 136 247 3 113 1 118 0.96 Wilm's tumour protein WT1 PF02165.15 295 WT1-203 - 302 2.3e-85 286.4 10.4 2 2 2.3e-28 3.8e-25 88.7 0.4 238 295 121 177 114 177 0.95 Wilm's tumour protein zf-H2C2_2 PF13465.6 26 WT1-203 - 302 1.2e-16 60.3 38.5 1 5 0.63 1e+03 0.4 0.4 10 24 173 190 169 192 0.70 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 WT1-203 - 302 1.2e-16 60.3 38.5 2 5 1.5e-09 2.4e-06 27.7 2.6 1 25 195 221 195 222 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 WT1-203 - 302 1.2e-16 60.3 38.5 3 5 2.6e-10 4.2e-07 30.1 2.9 2 25 226 249 225 250 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 WT1-203 - 302 1.2e-16 60.3 38.5 4 5 1.3e-08 2.1e-05 24.7 3.4 1 25 253 279 253 280 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 WT1-203 - 302 1.2e-16 60.3 38.5 5 5 9.4 1.5e+04 -3.3 0.9 2 9 284 291 283 296 0.66 Zinc-finger double domain zf-C2H2 PF00096.26 23 WT1-203 - 302 1.9e-15 56.3 38.4 1 4 0.00045 0.74 10.4 3.4 1 23 179 203 179 203 0.93 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 WT1-203 - 302 1.9e-15 56.3 38.4 2 4 7.1e-09 1.2e-05 25.5 3.1 1 23 209 233 209 233 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 WT1-203 - 302 1.9e-15 56.3 38.4 3 4 7.7e-08 0.00013 22.3 6.8 1 23 239 261 239 261 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 WT1-203 - 302 1.9e-15 56.3 38.4 4 4 7.8e-06 0.013 16.0 1.9 1 23 267 291 267 291 0.94 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 WT1-203 - 302 6.3e-08 32.8 33.2 1 4 0.012 20 6.4 2.4 1 23 179 203 179 204 0.89 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 WT1-203 - 302 6.3e-08 32.8 33.2 2 4 2.3e-06 0.0037 18.0 1.8 1 23 209 233 209 234 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 WT1-203 - 302 6.3e-08 32.8 33.2 3 4 2e-05 0.032 15.0 4.7 1 23 239 261 239 262 0.97 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 WT1-203 - 302 6.3e-08 32.8 33.2 4 4 0.00076 1.2 10.1 1.8 1 23 267 291 267 292 0.88 C2H2-type zinc finger # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/WT1-203.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/WT1-203.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/WT1-203.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/WT1-203.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/WT1-203.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:56:59 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- WT1 PF02165.15 295 WT1-204 - 446 5.7e-150 498.5 16.2 1 1 8.8e-151 1.4e-147 490.6 16.2 1 295 1 321 1 321 0.95 Wilm's tumour protein zf-H2C2_2 PF13465.6 26 WT1-204 - 446 3.5e-18 65.1 31.0 1 4 1.1 1.9e+03 -0.4 0.5 10 24 317 334 314 336 0.68 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 WT1-204 - 446 3.5e-18 65.1 31.0 2 4 2.4e-09 4e-06 27.0 2.6 1 25 339 365 339 366 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 WT1-204 - 446 3.5e-18 65.1 31.0 3 4 4.2e-10 6.9e-07 29.4 2.9 2 25 370 393 369 394 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 WT1-204 - 446 3.5e-18 65.1 31.0 4 4 2.1e-08 3.4e-05 24.0 3.4 1 25 397 423 397 424 0.95 Zinc-finger double domain zf-C2H2 PF00096.26 23 WT1-204 - 446 1.3e-14 53.7 38.4 1 4 0.00074 1.2 9.7 3.4 1 23 323 347 323 347 0.93 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 WT1-204 - 446 1.3e-14 53.7 38.4 2 4 1.2e-08 1.9e-05 24.8 3.1 1 23 353 377 353 377 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 WT1-204 - 446 1.3e-14 53.7 38.4 3 4 1.3e-07 0.0002 21.6 6.8 1 23 383 405 383 405 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 WT1-204 - 446 1.3e-14 53.7 38.4 4 4 1.3e-05 0.021 15.3 1.9 1 23 411 435 411 435 0.94 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 WT1-204 - 446 5e-07 30.0 33.2 1 4 0.02 32 5.7 2.4 1 23 323 347 323 348 0.89 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 WT1-204 - 446 5e-07 30.0 33.2 2 4 3.7e-06 0.0061 17.3 1.8 1 23 353 377 353 378 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 WT1-204 - 446 5e-07 30.0 33.2 3 4 3.3e-05 0.053 14.4 4.7 1 23 383 405 383 406 0.97 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 WT1-204 - 446 5e-07 30.0 33.2 4 4 0.0012 2 9.5 1.8 1 23 411 435 411 436 0.88 C2H2-type zinc finger # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/WT1-204.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/WT1-204.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/WT1-204.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/WT1-204.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/WT1-204.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:56:59 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- WT1 PF02165.15 295 WT1-205 - 429 3.7e-157 522.1 6.5 1 1 3.4e-160 5.5e-157 521.5 6.5 1 295 1 304 1 304 0.98 Wilm's tumour protein zf-H2C2_2 PF13465.6 26 WT1-205 - 429 2.9e-18 65.4 31.0 1 4 1.1 1.8e+03 -0.3 0.5 10 24 300 317 297 319 0.68 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 WT1-205 - 429 2.9e-18 65.4 31.0 2 4 2.3e-09 3.8e-06 27.1 2.6 1 25 322 348 322 349 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 WT1-205 - 429 2.9e-18 65.4 31.0 3 4 4e-10 6.6e-07 29.5 2.9 2 25 353 376 352 377 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 WT1-205 - 429 2.9e-18 65.4 31.0 4 4 2e-08 3.3e-05 24.1 3.4 1 25 380 406 380 407 0.95 Zinc-finger double domain zf-C2H2 PF00096.26 23 WT1-205 - 429 1.1e-14 53.9 38.4 1 4 0.0007 1.1 9.8 3.4 1 23 306 330 306 330 0.93 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 WT1-205 - 429 1.1e-14 53.9 38.4 2 4 1.1e-08 1.8e-05 24.9 3.1 1 23 336 360 336 360 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 WT1-205 - 429 1.1e-14 53.9 38.4 3 4 1.2e-07 0.0002 21.7 6.8 1 23 366 388 366 388 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 WT1-205 - 429 1.1e-14 53.9 38.4 4 4 1.2e-05 0.02 15.3 1.9 1 23 394 418 394 418 0.94 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 WT1-205 - 429 4e-07 30.3 33.2 1 4 0.019 31 5.8 2.4 1 23 306 330 306 331 0.89 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 WT1-205 - 429 4e-07 30.3 33.2 2 4 3.6e-06 0.0058 17.4 1.8 1 23 336 360 336 361 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 WT1-205 - 429 4e-07 30.3 33.2 3 4 3.1e-05 0.051 14.4 4.7 1 23 366 388 366 389 0.97 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 WT1-205 - 429 4e-07 30.3 33.2 4 4 0.0012 1.9 9.5 1.8 1 23 394 418 394 419 0.88 C2H2-type zinc finger # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/WT1-205.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/WT1-205.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/WT1-205.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/WT1-205.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/WT1-205.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:56:59 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/WT1-206.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/WT1-206.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/WT1-206.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/WT1-206.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/WT1-206.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:57:00 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/WT1-207.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/WT1-207.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/WT1-207.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/WT1-207.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/WT1-207.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:57:00 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-C2H2 PF00096.26 23 WT1-208 - 96 3.5e-11 42.9 26.7 1 3 0.00019 0.21 12.1 2.7 4 23 3 24 1 24 0.90 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 WT1-208 - 96 3.5e-11 42.9 26.7 2 3 2e-08 2.3e-05 24.6 6.8 1 23 30 52 30 52 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 WT1-208 - 96 3.5e-11 42.9 26.7 3 3 2e-06 0.0022 18.3 1.9 1 23 61 85 61 85 0.94 Zinc finger, C2H2 type zf-H2C2_2 PF13465.6 26 WT1-208 - 96 1.1e-09 38.2 17.4 1 4 3.1 3.5e+03 -1.3 0.2 18 24 5 11 3 13 0.78 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 WT1-208 - 96 1.1e-09 38.2 17.4 2 4 3.2e-10 3.5e-07 30.3 3.7 1 25 16 40 16 41 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 WT1-208 - 96 1.1e-09 38.2 17.4 3 4 8.1e-07 0.00091 19.5 5.9 1 25 44 73 44 74 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 WT1-208 - 96 1.1e-09 38.2 17.4 4 4 2.9 3.3e+03 -1.2 1.0 2 9 78 85 77 91 0.61 Zinc-finger double domain # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/WT1-208.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/WT1-208.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/WT1-208.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/WT1-208.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/WT1-208.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:57:01 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- WT1 PF02165.15 295 WT1-209 - 288 1.8e-91 306.5 3.6 1 1 2.3e-94 3e-91 305.7 3.6 136 295 3 160 1 160 0.99 Wilm's tumour protein zf-C2H2 PF00096.26 23 WT1-209 - 288 1.5e-15 56.7 38.4 1 4 0.00054 0.69 10.5 3.4 1 23 162 186 162 186 0.93 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 WT1-209 - 288 1.5e-15 56.7 38.4 2 4 8.5e-09 1.1e-05 25.6 3.1 1 23 192 216 192 216 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 WT1-209 - 288 1.5e-15 56.7 38.4 3 4 9.2e-08 0.00012 22.4 6.8 1 23 222 244 222 244 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 WT1-209 - 288 1.5e-15 56.7 38.4 4 4 9.3e-06 0.012 16.0 1.9 1 23 253 277 253 277 0.94 Zinc finger, C2H2 type zf-H2C2_2 PF13465.6 26 WT1-209 - 288 2.6e-15 56.0 38.1 1 4 0.75 9.6e+02 0.5 0.4 10 24 156 173 152 175 0.70 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 WT1-209 - 288 2.6e-15 56.0 38.1 2 4 1.8e-09 2.3e-06 27.8 2.6 1 25 178 204 178 205 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 WT1-209 - 288 2.6e-15 56.0 38.1 3 4 3.1e-10 4e-07 30.2 2.9 2 25 209 232 208 233 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 WT1-209 - 288 2.6e-15 56.0 38.1 4 4 5.4e-07 0.00069 19.9 3.0 1 25 236 265 236 266 0.91 Zinc-finger double domain zf-C2H2_4 PF13894.6 24 WT1-209 - 288 4.6e-08 33.2 33.2 1 4 0.014 18 6.5 2.4 1 23 162 186 162 187 0.89 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 WT1-209 - 288 4.6e-08 33.2 33.2 2 4 2.7e-06 0.0035 18.1 1.8 1 23 192 216 192 217 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 WT1-209 - 288 4.6e-08 33.2 33.2 3 4 2.4e-05 0.031 15.1 4.7 1 23 222 244 222 245 0.97 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 WT1-209 - 288 4.6e-08 33.2 33.2 4 4 0.00091 1.2 10.2 1.8 1 23 253 277 253 278 0.88 C2H2-type zinc finger # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/WT1-209.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/WT1-209.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/WT1-209.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/WT1-209.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/WT1-209.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:57:01 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/WT1-210.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/WT1-210.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/WT1-210.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/WT1-210.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/WT1-210.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:57:01 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/WT1-211.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/WT1-211.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/WT1-211.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/WT1-211.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/WT1-211.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:57:01 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/WT1-212.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/WT1-212.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/WT1-212.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/WT1-212.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/WT1-212.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:57:02 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-C2H2 PF00096.26 23 YY1-201 - 414 1.3e-16 60.0 21.3 1 4 3.2e-05 0.047 14.2 4.2 3 23 298 320 297 320 0.95 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 YY1-201 - 414 1.3e-16 60.0 21.3 2 4 2.6e-07 0.00039 20.7 0.4 1 23 325 347 325 347 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 YY1-201 - 414 1.3e-16 60.0 21.3 3 4 0.00028 0.41 11.2 0.1 5 23 359 377 358 377 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 YY1-201 - 414 1.3e-16 60.0 21.3 4 4 1.6e-08 2.4e-05 24.5 0.4 1 23 383 407 383 407 0.99 Zinc finger, C2H2 type zf-H2C2_2 PF13465.6 26 YY1-201 - 414 2.6e-12 46.6 19.2 1 5 4.2 6.2e+03 -2.1 0.1 15 24 296 307 292 308 0.74 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 YY1-201 - 414 2.6e-12 46.6 19.2 2 5 0.00016 0.24 11.9 0.7 3 25 314 335 312 336 0.76 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 YY1-201 - 414 2.6e-12 46.6 19.2 3 5 5.7e-06 0.0085 16.5 0.2 2 24 340 364 339 365 0.79 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 YY1-201 - 414 2.6e-12 46.6 19.2 4 5 4.6e-10 6.8e-07 29.4 0.2 1 25 369 395 369 396 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 YY1-201 - 414 2.6e-12 46.6 19.2 5 5 1.3 2e+03 -0.5 0.2 1 9 399 407 399 411 0.87 Zinc-finger double domain # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/YY1-201.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/YY1-201.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/YY1-201.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/YY1-201.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/YY1-201.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:57:02 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/YY1-202.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/YY1-202.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/YY1-202.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/YY1-202.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/YY1-202.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:57:03 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-C2H2 PF00096.26 23 YY1-204 - 109 2.9e-16 58.9 18.9 1 4 0.015 18 6.0 2.1 10 23 2 15 1 15 0.95 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 YY1-204 - 109 2.9e-16 58.9 18.9 2 4 4.9e-08 5.9e-05 23.3 0.4 1 23 20 42 20 42 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 YY1-204 - 109 2.9e-16 58.9 18.9 3 4 5.6e-05 0.067 13.7 0.1 5 23 54 72 53 72 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 YY1-204 - 109 2.9e-16 58.9 18.9 4 4 2.9e-09 3.5e-06 27.2 0.4 1 23 78 102 78 102 0.99 Zinc finger, C2H2 type zf-H2C2_2 PF13465.6 26 YY1-204 - 109 5.7e-16 58.1 16.0 1 4 3.1e-05 0.037 14.5 0.7 3 25 9 30 7 31 0.76 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 YY1-204 - 109 5.7e-16 58.1 16.0 2 4 1.3e-06 0.0015 18.8 0.5 2 24 35 59 34 60 0.79 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 YY1-204 - 109 5.7e-16 58.1 16.0 3 4 7.9e-11 9.4e-08 32.2 0.2 1 25 64 90 64 91 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 YY1-204 - 109 5.7e-16 58.1 16.0 4 4 0.32 3.9e+02 1.8 0.2 1 9 94 102 94 106 0.87 Zinc-finger double domain zf-C2H2_4 PF13894.6 24 YY1-204 - 109 1.6e-10 40.9 16.3 1 4 0.03 35 5.6 0.5 10 23 2 15 1 16 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 YY1-204 - 109 1.6e-10 40.9 16.3 2 4 1.4e-05 0.017 16.0 0.8 1 23 20 42 20 43 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 YY1-204 - 109 1.6e-10 40.9 16.3 3 4 0.00038 0.46 11.5 0.1 6 23 55 72 51 73 0.90 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 YY1-204 - 109 1.6e-10 40.9 16.3 4 4 3.3e-06 0.004 17.9 0.2 1 23 78 102 78 103 0.96 C2H2-type zinc finger # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/YY1-204.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/YY1-204.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/YY1-204.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/YY1-204.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/YY1-204.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:57:03 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-C2H2 PF00096.26 23 YY1-205 - 139 1.6e-09 37.7 5.5 1 2 2.5e-05 0.074 13.5 0.6 5 23 84 102 75 102 0.86 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 YY1-205 - 139 1.6e-09 37.7 5.5 2 2 1.8e-09 5.3e-06 26.6 0.4 1 23 108 132 108 132 0.99 Zinc finger, C2H2 type zf-H2C2_2 PF13465.6 26 YY1-205 - 139 1.4e-07 31.6 0.2 1 3 0.57 1.7e+03 -0.3 0.1 20 24 85 89 71 90 0.70 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 YY1-205 - 139 1.4e-07 31.6 0.2 2 3 4.8e-11 1.4e-07 31.6 0.2 1 25 94 120 94 121 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 YY1-205 - 139 1.4e-07 31.6 0.2 3 3 0.18 5.3e+02 1.3 0.2 1 9 124 132 124 136 0.87 Zinc-finger double domain # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/YY1-205.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/YY1-205.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/YY1-205.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/YY1-205.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/YY1-205.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:57:03 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/YY1-206.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/YY1-206.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/YY1-206.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/YY1-206.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/YY1-206.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:57:04 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 YY2-201 - 372 8.6e-15 54.4 23.5 1 5 3.4 3.8e+03 -1.4 0.5 11 24 250 265 246 266 0.76 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 YY2-201 - 372 8.6e-15 54.4 23.5 2 5 0.00038 0.43 11.1 0.4 6 24 271 292 270 294 0.79 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 YY2-201 - 372 8.6e-15 54.4 23.5 3 5 1.7e-09 1.9e-06 28.0 0.9 2 25 298 323 297 323 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 YY2-201 - 372 8.6e-15 54.4 23.5 4 5 2.4e-10 2.6e-07 30.7 0.2 1 25 327 353 327 354 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 YY2-201 - 372 8.6e-15 54.4 23.5 5 5 2.7 3.1e+03 -1.1 0.2 1 9 357 365 357 369 0.83 Zinc-finger double domain zf-C2H2 PF00096.26 23 YY2-201 - 372 1.8e-14 53.3 20.5 1 4 0.00044 0.49 11.0 0.7 3 23 256 278 254 278 0.93 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 YY2-201 - 372 1.8e-14 53.3 20.5 2 4 1.9e-05 0.021 15.3 0.5 1 23 283 305 283 305 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 YY2-201 - 372 1.8e-14 53.3 20.5 3 4 4.3e-06 0.0048 17.3 0.9 1 23 311 335 311 335 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 YY2-201 - 372 1.8e-14 53.3 20.5 4 4 8.9e-08 0.0001 22.6 0.5 1 23 341 365 341 365 0.98 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 YY2-201 - 372 5.1e-11 42.4 19.1 1 4 0.0004 0.45 11.5 0.4 2 23 255 278 254 279 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 YY2-201 - 372 5.1e-11 42.4 19.1 2 4 9.8e-05 0.11 13.4 0.9 1 23 283 305 283 306 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 YY2-201 - 372 5.1e-11 42.4 19.1 3 4 6.4e-05 0.072 14.0 0.6 1 23 311 335 311 336 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 YY2-201 - 372 5.1e-11 42.4 19.1 4 4 2.2e-05 0.025 15.4 0.3 1 23 341 365 341 366 0.96 C2H2-type zinc finger # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/YY2-201.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/YY2-201.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/YY2-201.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/YY2-201.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/YY2-201.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:57:04 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- BTB PF00651.31 111 ZBTB10-201 - 579 4.2e-23 81.7 0.2 1 1 3.5e-26 6.3e-23 81.1 0.2 1 109 62 169 62 171 0.90 BTB/POZ domain zf-H2C2_5 PF13909.6 26 ZBTB10-201 - 579 1.5e-10 40.6 1.2 1 3 1.3 2.4e+03 -1.6 0.2 5 10 42 47 42 48 0.84 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 ZBTB10-201 - 579 1.5e-10 40.6 1.2 2 3 8.3e-14 1.5e-10 40.6 1.2 2 26 431 454 430 454 0.97 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 ZBTB10-201 - 579 1.5e-10 40.6 1.2 3 3 0.39 7e+02 0.1 3.5 15 26 472 482 468 482 0.81 C2H2-type zinc-finger domain zf-H2C2_2 PF13465.6 26 ZBTB10-201 - 579 2e-09 37.4 13.8 1 3 0.0083 15 6.2 0.1 14 25 429 440 420 441 0.84 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZBTB10-201 - 579 2e-09 37.4 13.8 2 3 2.1e-07 0.00038 20.8 0.1 2 26 445 469 444 469 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZBTB10-201 - 579 2e-09 37.4 13.8 3 3 1.8e-05 0.032 14.7 5.2 2 24 473 495 472 495 0.91 Zinc-finger double domain # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB10-201.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB10-201.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB10-201.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB10-201.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB10-201.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:57:04 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- BTB PF00651.31 111 ZBTB10-202 - 847 7e-23 81.0 0.2 1 1 6.3e-26 1.1e-22 80.3 0.2 1 109 354 461 354 463 0.90 BTB/POZ domain zf-H2C2_5 PF13909.6 26 ZBTB10-202 - 847 2.3e-10 40.0 1.2 1 5 0.062 1.1e+02 2.7 0.3 5 12 247 254 247 257 0.91 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 ZBTB10-202 - 847 2.3e-10 40.0 1.2 2 5 10 1.8e+04 -4.9 2.1 16 25 308 317 308 317 0.83 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 ZBTB10-202 - 847 2.3e-10 40.0 1.2 3 5 2 3.6e+03 -2.2 0.2 5 10 334 339 334 340 0.84 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 ZBTB10-202 - 847 2.3e-10 40.0 1.2 4 5 1.3e-13 2.3e-10 40.0 1.2 2 26 699 722 698 722 0.97 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 ZBTB10-202 - 847 2.3e-10 40.0 1.2 5 5 0.59 1.1e+03 -0.5 3.5 15 26 740 750 736 750 0.81 C2H2-type zinc-finger domain zf-H2C2_2 PF13465.6 26 ZBTB10-202 - 847 6.4e-09 35.8 13.8 1 3 0.013 23 5.6 0.1 14 25 697 708 688 709 0.84 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZBTB10-202 - 847 6.4e-09 35.8 13.8 2 3 3.3e-07 0.00059 20.1 0.1 2 26 713 737 712 737 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZBTB10-202 - 847 6.4e-09 35.8 13.8 3 3 2.8e-05 0.05 14.1 5.2 2 24 741 763 740 763 0.91 Zinc-finger double domain # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB10-202.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB10-202.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB10-202.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB10-202.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB10-202.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:57:05 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- BTB PF00651.31 111 ZBTB10-203 - 871 7.3e-23 80.9 0.2 1 1 5.9e-26 1.2e-22 80.3 0.2 1 109 354 461 354 463 0.90 BTB/POZ domain zf-H2C2_5 PF13909.6 26 ZBTB10-203 - 871 2.4e-10 40.0 1.2 1 5 0.058 1.2e+02 2.6 0.3 5 12 247 254 247 257 0.91 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 ZBTB10-203 - 871 2.4e-10 40.0 1.2 2 5 9 1.8e+04 -5.0 2.1 16 25 308 317 308 317 0.83 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 ZBTB10-203 - 871 2.4e-10 40.0 1.2 3 5 1.8 3.7e+03 -2.2 0.2 5 10 334 339 334 340 0.84 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 ZBTB10-203 - 871 2.4e-10 40.0 1.2 4 5 1.2e-13 2.4e-10 40.0 1.2 2 26 723 746 722 746 0.97 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 ZBTB10-203 - 871 2.4e-10 40.0 1.2 5 5 0.55 1.1e+03 -0.5 3.5 15 26 764 774 760 774 0.81 C2H2-type zinc-finger domain zf-H2C2_2 PF13465.6 26 ZBTB10-203 - 871 7.1e-09 35.7 13.8 1 3 0.012 24 5.6 0.1 14 25 721 732 712 733 0.84 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZBTB10-203 - 871 7.1e-09 35.7 13.8 2 3 3.1e-07 0.00061 20.1 0.1 2 26 737 761 736 761 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZBTB10-203 - 871 7.1e-09 35.7 13.8 3 3 2.6e-05 0.051 14.0 5.2 2 24 765 787 764 787 0.91 Zinc-finger double domain # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB10-203.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB10-203.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB10-203.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB10-203.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB10-203.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:57:05 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- BTB PF00651.31 111 ZBTB10-204 - 871 7.3e-23 80.9 0.2 1 1 5.9e-26 1.2e-22 80.3 0.2 1 109 354 461 354 463 0.90 BTB/POZ domain zf-H2C2_5 PF13909.6 26 ZBTB10-204 - 871 2.4e-10 40.0 1.2 1 5 0.058 1.2e+02 2.6 0.3 5 12 247 254 247 257 0.91 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 ZBTB10-204 - 871 2.4e-10 40.0 1.2 2 5 9 1.8e+04 -5.0 2.1 16 25 308 317 308 317 0.83 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 ZBTB10-204 - 871 2.4e-10 40.0 1.2 3 5 1.8 3.7e+03 -2.2 0.2 5 10 334 339 334 340 0.84 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 ZBTB10-204 - 871 2.4e-10 40.0 1.2 4 5 1.2e-13 2.4e-10 40.0 1.2 2 26 723 746 722 746 0.97 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 ZBTB10-204 - 871 2.4e-10 40.0 1.2 5 5 0.55 1.1e+03 -0.5 3.5 15 26 764 774 760 774 0.81 C2H2-type zinc-finger domain zf-H2C2_2 PF13465.6 26 ZBTB10-204 - 871 7.1e-09 35.7 13.8 1 3 0.012 24 5.6 0.1 14 25 721 732 712 733 0.84 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZBTB10-204 - 871 7.1e-09 35.7 13.8 2 3 3.1e-07 0.00061 20.1 0.1 2 26 737 761 736 761 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZBTB10-204 - 871 7.1e-09 35.7 13.8 3 3 2.6e-05 0.051 14.0 5.2 2 24 765 787 764 787 0.91 Zinc-finger double domain # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB10-204.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB10-204.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB10-204.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB10-204.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB10-204.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:57:05 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- BTB PF00651.31 111 ZBTB10-205 - 698 5.6e-23 81.3 0.2 1 1 4.3e-26 8.5e-23 80.7 0.2 1 109 181 288 181 290 0.90 BTB/POZ domain zf-H2C2_5 PF13909.6 26 ZBTB10-205 - 698 1.9e-10 40.3 1.2 1 5 0.045 91 2.9 0.3 5 12 74 81 74 84 0.91 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 ZBTB10-205 - 698 1.9e-10 40.3 1.2 2 5 9 1.8e+04 -4.6 2.1 16 25 135 144 135 144 0.83 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 ZBTB10-205 - 698 1.9e-10 40.3 1.2 3 5 1.5 2.9e+03 -1.9 0.2 5 10 161 166 161 167 0.84 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 ZBTB10-205 - 698 1.9e-10 40.3 1.2 4 5 9.3e-14 1.9e-10 40.3 1.2 2 26 550 573 549 573 0.97 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 ZBTB10-205 - 698 1.9e-10 40.3 1.2 5 5 0.43 8.6e+02 -0.2 3.5 15 26 591 601 587 601 0.81 C2H2-type zinc-finger domain zf-H2C2_2 PF13465.6 26 ZBTB10-205 - 698 2.9e-09 36.9 13.8 1 3 0.0092 18 5.9 0.1 14 25 548 559 539 560 0.84 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZBTB10-205 - 698 2.9e-09 36.9 13.8 2 3 2.4e-07 0.00047 20.5 0.1 2 26 564 588 563 588 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZBTB10-205 - 698 2.9e-09 36.9 13.8 3 3 2e-05 0.04 14.4 5.2 2 24 592 614 591 614 0.91 Zinc-finger double domain # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB10-205.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB10-205.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB10-205.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB10-205.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB10-205.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:57:06 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZBTB11-201 - 1053 5.1e-43 143.6 84.2 1 14 2.3 2.6e+03 -0.8 0.2 15 21 112 120 87 122 0.64 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZBTB11-201 - 1053 5.1e-43 143.6 84.2 2 14 1.4 1.6e+03 -0.2 0.1 12 24 566 578 556 579 0.83 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZBTB11-201 - 1053 5.1e-43 143.6 84.2 3 14 0.00011 0.12 12.8 1.1 2 24 584 606 583 608 0.90 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZBTB11-201 - 1053 5.1e-43 143.6 84.2 4 14 0.43 4.8e+02 1.4 0.1 1 12 611 622 611 625 0.84 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZBTB11-201 - 1053 5.1e-43 143.6 84.2 5 14 2.9e-09 3.2e-06 27.3 0.4 1 24 665 688 665 690 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZBTB11-201 - 1053 5.1e-43 143.6 84.2 6 14 2.3e-06 0.0025 18.1 0.2 2 26 694 718 693 718 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZBTB11-201 - 1053 5.1e-43 143.6 84.2 7 14 4.1e-09 4.6e-06 26.8 0.5 1 24 721 744 721 746 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZBTB11-201 - 1053 5.1e-43 143.6 84.2 8 14 0.00096 1.1 9.8 4.2 1 24 749 775 749 776 0.87 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZBTB11-201 - 1053 5.1e-43 143.6 84.2 9 14 4.8e-09 5.3e-06 26.6 1.8 1 24 780 803 780 804 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZBTB11-201 - 1053 5.1e-43 143.6 84.2 10 14 6.7e-05 0.076 13.5 0.4 4 24 811 831 808 832 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZBTB11-201 - 1053 5.1e-43 143.6 84.2 11 14 0.008 8.9 6.9 1.5 2 25 837 868 837 869 0.82 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZBTB11-201 - 1053 5.1e-43 143.6 84.2 12 14 8.3e-07 0.00093 19.5 0.2 2 21 873 892 872 894 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZBTB11-201 - 1053 5.1e-43 143.6 84.2 13 14 9.2e-11 1e-07 32.0 0.2 1 24 900 923 900 924 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZBTB11-201 - 1053 5.1e-43 143.6 84.2 14 14 1.7 1.9e+03 -0.4 0.2 2 10 929 938 928 943 0.81 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZBTB11-201 - 1053 6.9e-36 120.7 98.0 1 13 9.4 1e+04 -2.7 0.2 2 9 115 122 115 126 0.75 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZBTB11-201 - 1053 6.9e-36 120.7 98.0 2 13 7e-06 0.0079 16.6 1.2 1 23 569 591 569 591 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZBTB11-201 - 1053 6.9e-36 120.7 98.0 3 13 4.5e-06 0.0051 17.2 0.9 1 23 597 619 597 619 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZBTB11-201 - 1053 6.9e-36 120.7 98.0 4 13 2.8e-06 0.0032 17.8 0.4 1 23 651 673 651 673 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZBTB11-201 - 1053 6.9e-36 120.7 98.0 5 13 1.6e-05 0.018 15.4 2.5 1 23 679 701 679 701 0.95 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZBTB11-201 - 1053 6.9e-36 120.7 98.0 6 13 9.1e-07 0.001 19.4 0.6 1 23 707 729 707 729 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZBTB11-201 - 1053 6.9e-36 120.7 98.0 7 13 7.7e-05 0.087 13.3 2.9 1 23 735 757 735 757 0.95 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZBTB11-201 - 1053 6.9e-36 120.7 98.0 8 13 7.5e-05 0.084 13.4 3.9 1 23 766 788 766 788 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZBTB11-201 - 1053 6.9e-36 120.7 98.0 9 13 0.024 26 5.5 4.1 1 23 794 816 794 816 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZBTB11-201 - 1053 6.9e-36 120.7 98.0 10 13 4.8e-06 0.0054 17.1 0.9 1 23 822 846 822 846 0.93 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZBTB11-201 - 1053 6.9e-36 120.7 98.0 11 13 1.4e-06 0.0016 18.8 1.7 2 23 859 880 859 880 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZBTB11-201 - 1053 6.9e-36 120.7 98.0 12 13 0.0017 1.9 9.1 0.1 1 23 886 908 886 908 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZBTB11-201 - 1053 6.9e-36 120.7 98.0 13 13 3.7e-06 0.0042 17.5 0.3 1 23 914 937 914 937 0.97 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZBTB11-201 - 1053 8.8e-34 113.3 92.9 1 13 5.9 6.6e+03 -1.5 0.2 2 10 115 123 114 129 0.76 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZBTB11-201 - 1053 8.8e-34 113.3 92.9 2 13 0.0008 0.9 10.6 0.8 1 23 569 591 569 592 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZBTB11-201 - 1053 8.8e-34 113.3 92.9 3 13 4e-06 0.0044 17.7 1.0 1 23 597 619 597 620 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZBTB11-201 - 1053 8.8e-34 113.3 92.9 4 13 7e-06 0.0078 17.0 0.3 1 23 651 673 651 674 0.97 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZBTB11-201 - 1053 8.8e-34 113.3 92.9 5 13 0.0019 2.1 9.4 2.1 1 23 679 701 679 702 0.91 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZBTB11-201 - 1053 8.8e-34 113.3 92.9 6 13 3.5e-06 0.0039 17.9 0.9 1 23 707 729 707 730 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZBTB11-201 - 1053 8.8e-34 113.3 92.9 7 13 7e-06 0.0078 17.0 2.6 1 23 735 757 735 758 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZBTB11-201 - 1053 8.8e-34 113.3 92.9 8 13 2.7e-05 0.031 15.1 2.6 1 23 766 788 766 789 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZBTB11-201 - 1053 8.8e-34 113.3 92.9 9 13 0.003 3.4 8.7 4.8 1 23 794 816 794 817 0.88 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZBTB11-201 - 1053 8.8e-34 113.3 92.9 10 13 4e-05 0.044 14.6 0.3 1 22 822 843 822 844 0.85 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZBTB11-201 - 1053 8.8e-34 113.3 92.9 11 13 1.7e-05 0.019 15.7 0.9 2 23 859 880 858 881 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZBTB11-201 - 1053 8.8e-34 113.3 92.9 12 13 0.00031 0.35 11.8 0.1 1 23 886 908 886 909 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZBTB11-201 - 1053 8.8e-34 113.3 92.9 13 13 2.8e-05 0.032 15.1 0.3 1 24 914 937 914 937 0.96 C2H2-type zinc finger BTB PF00651.31 111 ZBTB11-201 - 1053 4.5e-21 75.2 1.2 1 1 8.7e-24 9.7e-21 74.1 1.2 1 105 204 306 204 310 0.94 BTB/POZ domain Integrase_H2C2 PF17921.1 58 ZBTB11-201 - 1053 4.3e-13 49.2 2.2 1 1 2.3e-15 2.6e-12 46.6 2.2 3 54 68 121 66 124 0.96 Integrase zinc binding domain zf-C2H2_6 PF13912.6 27 ZBTB11-201 - 1053 6.2e-13 48.4 84.5 1 12 2.5e-06 0.0029 17.6 1.1 2 25 569 592 568 594 0.91 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZBTB11-201 - 1053 6.2e-13 48.4 84.5 2 12 3e-07 0.00034 20.5 0.8 2 25 597 620 596 622 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZBTB11-201 - 1053 6.2e-13 48.4 84.5 3 12 8.7e-07 0.00098 19.1 0.1 2 23 651 673 651 674 0.91 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZBTB11-201 - 1053 6.2e-13 48.4 84.5 4 12 0.0035 3.9 7.6 0.7 2 11 679 688 679 692 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZBTB11-201 - 1053 6.2e-13 48.4 84.5 5 12 0.0033 3.7 7.6 0.5 2 24 707 729 706 732 0.92 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZBTB11-201 - 1053 6.2e-13 48.4 84.5 6 12 2.9e-05 0.033 14.2 4.8 2 25 735 758 734 760 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZBTB11-201 - 1053 6.2e-13 48.4 84.5 7 12 0.093 1e+02 3.0 1.3 2 24 766 788 766 791 0.86 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZBTB11-201 - 1053 6.2e-13 48.4 84.5 8 12 9.3 1e+04 -3.3 4.7 2 24 794 816 794 817 0.85 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZBTB11-201 - 1053 6.2e-13 48.4 84.5 9 12 0.0056 6.3 6.9 0.7 2 11 822 831 822 833 0.96 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZBTB11-201 - 1053 6.2e-13 48.4 84.5 10 12 0.39 4.4e+02 1.0 0.4 3 25 859 881 858 883 0.88 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZBTB11-201 - 1053 6.2e-13 48.4 84.5 11 12 6.3 7e+03 -2.8 0.1 2 8 886 892 886 894 0.87 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZBTB11-201 - 1053 6.2e-13 48.4 84.5 12 12 0.035 40 4.4 0.6 2 25 914 938 914 939 0.80 C2H2-type zinc finger zf-Di19 PF05605.12 54 ZBTB11-201 - 1053 3.3e-07 30.5 46.3 1 8 0.0013 1.5 9.2 1.0 15 50 582 617 567 623 0.61 Drought induced 19 protein (Di19), zinc-binding zf-Di19 PF05605.12 54 ZBTB11-201 - 1053 3.3e-07 30.5 46.3 2 8 0.077 86 3.5 0.9 28 49 647 670 640 703 0.71 Drought induced 19 protein (Di19), zinc-binding zf-Di19 PF05605.12 54 ZBTB11-201 - 1053 3.3e-07 30.5 46.3 3 8 2.4e-05 0.027 14.8 2.7 2 50 706 755 705 758 0.78 Drought induced 19 protein (Di19), zinc-binding zf-Di19 PF05605.12 54 ZBTB11-201 - 1053 3.3e-07 30.5 46.3 4 8 0.0092 10 6.5 2.9 2 51 734 787 733 792 0.74 Drought induced 19 protein (Di19), zinc-binding zf-Di19 PF05605.12 54 ZBTB11-201 - 1053 3.3e-07 30.5 46.3 5 8 0.5 5.6e+02 0.9 5.2 3 50 766 814 764 817 0.74 Drought induced 19 protein (Di19), zinc-binding zf-Di19 PF05605.12 54 ZBTB11-201 - 1053 3.3e-07 30.5 46.3 6 8 0.0051 5.8 7.3 3.8 3 49 794 841 792 847 0.74 Drought induced 19 protein (Di19), zinc-binding zf-Di19 PF05605.12 54 ZBTB11-201 - 1053 3.3e-07 30.5 46.3 7 8 0.024 26 5.2 0.8 3 49 822 877 820 881 0.62 Drought induced 19 protein (Di19), zinc-binding zf-Di19 PF05605.12 54 ZBTB11-201 - 1053 3.3e-07 30.5 46.3 8 8 6.5e-07 0.00073 19.8 0.7 3 54 886 938 884 938 0.79 Drought induced 19 protein (Di19), zinc-binding # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB11-201.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB11-201.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB11-201.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB11-201.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB11-201.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:57:06 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- Integrase_H2C2 PF17921.1 58 ZBTB11-202 - 215 1.4e-13 50.7 2.2 1 1 3e-17 2.7e-13 49.8 2.2 3 54 68 121 66 124 0.96 Integrase zinc binding domain # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB11-202.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB11-202.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB11-202.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB11-202.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB11-202.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:57:07 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZBTB11-203 - 69 7.7e-15 54.5 6.2 1 3 2.1e-08 2.1e-05 24.7 0.5 6 24 1 19 1 21 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZBTB11-203 - 69 7.7e-15 54.5 6.2 2 3 5.1e-08 5.1e-05 23.5 0.2 1 26 24 49 24 49 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZBTB11-203 - 69 7.7e-15 54.5 6.2 3 3 0.0023 2.3 8.8 0.0 1 12 52 63 52 68 0.81 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZBTB11-203 - 69 1.5e-10 40.9 9.4 1 2 4.1e-07 0.0004 20.7 2.5 1 23 10 32 10 32 0.95 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZBTB11-203 - 69 1.5e-10 40.9 9.4 2 2 2.2e-08 2.2e-05 24.7 0.6 1 23 38 60 38 60 0.98 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZBTB11-203 - 69 5.3e-08 33.1 9.5 1 2 4.5e-05 0.045 14.6 2.1 1 23 10 32 10 33 0.91 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZBTB11-203 - 69 5.3e-08 33.1 9.5 2 2 8e-08 8e-05 23.2 0.9 1 23 38 60 38 61 0.96 C2H2-type zinc finger # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB11-203.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB11-203.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB11-203.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB11-203.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB11-203.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:57:07 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- BTB PF00651.31 111 ZBTB1-201 - 644 8.1e-20 71.1 1.5 1 1 8e-23 2.1e-19 69.8 1.5 1 106 14 116 14 120 0.85 BTB/POZ domain # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB1-201.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB1-201.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB1-201.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB1-201.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB1-201.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:57:07 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB1-202.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB1-202.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB1-202.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB1-202.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB1-202.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:57:08 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- BTB PF00651.31 111 ZBTB1-203 - 713 9.2e-20 70.9 1.5 1 1 1.3e-22 2.4e-19 69.6 1.5 1 106 14 116 14 120 0.85 BTB/POZ domain zf-C2H2_4 PF13894.6 24 ZBTB1-203 - 713 2.9e-10 40.1 60.2 1 9 0.0027 4.9 8.3 1.9 1 22 216 237 216 239 0.86 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZBTB1-203 - 713 2.9e-10 40.1 60.2 2 9 0.025 44 5.3 0.1 3 24 423 443 422 443 0.91 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZBTB1-203 - 713 2.9e-10 40.1 60.2 3 9 0.71 1.3e+03 0.7 0.8 2 21 449 468 448 470 0.86 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZBTB1-203 - 713 2.9e-10 40.1 60.2 4 9 0.00021 0.38 11.7 0.5 1 21 534 554 534 556 0.90 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZBTB1-203 - 713 2.9e-10 40.1 60.2 5 9 0.061 1.1e+02 4.1 6.5 2 23 579 600 573 601 0.91 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZBTB1-203 - 713 2.9e-10 40.1 60.2 6 9 0.0056 10 7.3 0.4 1 19 606 624 606 628 0.91 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZBTB1-203 - 713 2.9e-10 40.1 60.2 7 9 0.00088 1.6 9.8 1.7 1 23 634 656 634 657 0.87 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZBTB1-203 - 713 2.9e-10 40.1 60.2 8 9 8e-05 0.14 13.0 0.1 2 23 663 684 662 685 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZBTB1-203 - 713 2.9e-10 40.1 60.2 9 9 5.4e-05 0.098 13.6 0.3 1 24 686 709 686 709 0.95 C2H2-type zinc finger zf-C2H2 PF00096.26 23 ZBTB1-203 - 713 6.6e-09 35.7 57.9 1 9 0.11 2e+02 2.7 0.7 1 15 216 230 216 237 0.75 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZBTB1-203 - 713 6.6e-09 35.7 57.9 2 9 0.23 4.2e+02 1.7 0.1 3 23 423 443 422 443 0.86 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZBTB1-203 - 713 6.6e-09 35.7 57.9 3 9 0.26 4.6e+02 1.6 0.1 3 21 450 468 448 469 0.84 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZBTB1-203 - 713 6.6e-09 35.7 57.9 4 9 5.2e-05 0.093 13.2 0.1 1 21 534 554 534 555 0.95 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZBTB1-203 - 713 6.6e-09 35.7 57.9 5 9 0.0057 10 6.8 9.2 2 23 579 600 574 600 0.95 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZBTB1-203 - 713 6.6e-09 35.7 57.9 6 9 0.00096 1.7 9.2 0.7 1 23 606 628 606 628 0.92 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZBTB1-203 - 713 6.6e-09 35.7 57.9 7 9 0.13 2.3e+02 2.5 2.8 1 23 634 656 634 656 0.87 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZBTB1-203 - 713 6.6e-09 35.7 57.9 8 9 2e-05 0.037 14.5 0.1 3 23 664 684 662 684 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZBTB1-203 - 713 6.6e-09 35.7 57.9 9 9 8.6e-05 0.15 12.5 0.6 1 23 686 709 686 709 0.95 Zinc finger, C2H2 type # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB1-203.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB1-203.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB1-203.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB1-203.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB1-203.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:57:08 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB1-204.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB1-204.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB1-204.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB1-204.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB1-204.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:57:09 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB1-205.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB1-205.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB1-205.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB1-205.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB1-205.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:57:09 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB1-206.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB1-206.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB1-206.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB1-206.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB1-206.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:57:09 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- BTB PF00651.31 111 ZBTB12-201 - 459 1.8e-22 79.7 0.6 1 1 4.4e-25 3.6e-22 78.7 0.6 1 109 23 125 23 127 0.92 BTB/POZ domain zf-C2H2 PF00096.26 23 ZBTB12-201 - 459 5.3e-14 51.8 30.2 1 4 0.014 12 6.6 0.1 2 23 334 356 333 356 0.92 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZBTB12-201 - 459 5.3e-14 51.8 30.2 2 4 8.5e-09 6.9e-06 26.2 2.8 1 23 359 381 359 381 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZBTB12-201 - 459 5.3e-14 51.8 30.2 3 4 1.7e-06 0.0014 19.0 5.5 1 23 387 409 387 409 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZBTB12-201 - 459 5.3e-14 51.8 30.2 4 4 3.9e-05 0.032 14.7 1.8 1 23 415 438 415 438 0.97 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZBTB12-201 - 459 5.6e-12 45.4 28.4 1 4 6.1e-05 0.05 14.5 0.2 2 24 334 356 333 356 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZBTB12-201 - 459 5.6e-12 45.4 28.4 2 4 5.7e-06 0.0046 17.7 1.8 1 23 359 381 359 382 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZBTB12-201 - 459 5.6e-12 45.4 28.4 3 4 0.00019 0.16 12.9 4.7 1 23 387 409 387 410 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZBTB12-201 - 459 5.6e-12 45.4 28.4 4 4 3.6e-05 0.03 15.2 1.6 1 24 415 438 415 438 0.97 C2H2-type zinc finger zf-H2C2_2 PF13465.6 26 ZBTB12-201 - 459 7.7e-10 38.7 26.0 1 5 0.3 2.4e+02 2.4 0.2 14 24 332 342 325 342 0.79 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZBTB12-201 - 459 7.7e-10 38.7 26.0 2 5 0.0075 6.1 7.5 1.4 2 26 348 370 347 370 0.77 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZBTB12-201 - 459 7.7e-10 38.7 26.0 3 5 1.3e-07 0.0001 22.5 1.2 1 25 373 397 373 398 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZBTB12-201 - 459 7.7e-10 38.7 26.0 4 5 4.1e-06 0.0034 17.8 0.6 5 26 405 426 402 426 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZBTB12-201 - 459 7.7e-10 38.7 26.0 5 5 0.092 75 4.0 0.1 3 13 431 441 429 444 0.87 Zinc-finger double domain # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB12-201.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB12-201.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB12-201.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB12-201.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB12-201.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:57:10 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- BTB PF00651.31 111 ZBTB14-201 - 449 2.9e-28 98.3 0.8 1 1 4.9e-31 5.2e-28 97.5 0.8 1 107 26 128 26 132 0.93 BTB/POZ domain zf-C2H2 PF00096.26 23 ZBTB14-201 - 449 1.2e-25 88.5 31.5 1 5 2.5e-05 0.026 15.0 0.2 3 23 279 299 277 299 0.95 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZBTB14-201 - 449 1.2e-25 88.5 31.5 2 5 4.8e-08 5.1e-05 23.5 1.2 1 23 305 327 305 327 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZBTB14-201 - 449 1.2e-25 88.5 31.5 3 5 2e-08 2.1e-05 24.7 0.2 1 23 333 355 333 355 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZBTB14-201 - 449 1.2e-25 88.5 31.5 4 5 2.4e-07 0.00026 21.3 7.5 1 23 361 383 361 383 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZBTB14-201 - 449 1.2e-25 88.5 31.5 5 5 1.2e-06 0.0013 19.1 0.3 1 23 389 412 389 412 0.95 Zinc finger, C2H2 type zf-H2C2_2 PF13465.6 26 ZBTB14-201 - 449 6.1e-23 80.2 47.2 1 6 0.014 14 6.3 0.1 9 25 272 287 269 288 0.80 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZBTB14-201 - 449 6.1e-23 80.2 47.2 2 6 1.6e-07 0.00016 21.9 1.1 2 26 292 316 291 316 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZBTB14-201 - 449 6.1e-23 80.2 47.2 3 6 2.5e-09 2.6e-06 27.6 1.7 1 24 319 342 319 344 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZBTB14-201 - 449 6.1e-23 80.2 47.2 4 6 5.4e-09 5.7e-06 26.5 3.9 1 26 347 372 347 372 0.97 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZBTB14-201 - 449 6.1e-23 80.2 47.2 5 6 5.9e-09 6.3e-06 26.4 2.1 1 25 375 399 375 400 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZBTB14-201 - 449 6.1e-23 80.2 47.2 6 6 1.1 1.2e+03 0.2 0.2 1 13 403 415 403 419 0.76 Zinc-finger double domain zf-C2H2_4 PF13894.6 24 ZBTB14-201 - 449 1.5e-15 56.6 36.3 1 5 4.9e-06 0.0052 17.5 0.2 2 23 278 299 277 300 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZBTB14-201 - 449 1.5e-15 56.6 36.3 2 5 4.1e-06 0.0043 17.8 1.1 1 23 305 327 305 328 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZBTB14-201 - 449 1.5e-15 56.6 36.3 3 5 7.4e-06 0.0078 17.0 0.3 1 23 333 355 333 356 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZBTB14-201 - 449 1.5e-15 56.6 36.3 4 5 0.00044 0.47 11.4 6.3 1 23 361 383 361 384 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZBTB14-201 - 449 1.5e-15 56.6 36.3 5 5 7.9e-05 0.084 13.8 0.3 1 24 389 412 389 412 0.96 C2H2-type zinc finger zf-C2H2_jaz PF12171.8 27 ZBTB14-201 - 449 6.4e-14 51.8 19.7 1 5 7.9e-06 0.0084 16.4 0.0 2 22 277 297 276 297 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZBTB14-201 - 449 6.4e-14 51.8 19.7 2 5 0.0001 0.11 12.8 0.1 2 22 305 325 304 325 0.95 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZBTB14-201 - 449 6.4e-14 51.8 19.7 3 5 0.00019 0.2 12.0 0.0 2 22 333 353 332 353 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZBTB14-201 - 449 6.4e-14 51.8 19.7 4 5 0.00019 0.2 12.0 2.7 2 22 361 381 360 381 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZBTB14-201 - 449 6.4e-14 51.8 19.7 5 5 0.0032 3.4 8.1 0.1 2 22 389 409 388 410 0.93 Zinc-finger double-stranded RNA-binding zf-met PF12874.7 25 ZBTB14-201 - 449 1e-13 51.1 18.4 1 5 0.00038 0.4 11.1 0.0 3 20 279 296 277 297 0.93 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZBTB14-201 - 449 1e-13 51.1 18.4 2 5 4.8e-06 0.0051 17.2 0.6 1 22 305 326 305 328 0.92 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZBTB14-201 - 449 1e-13 51.1 18.4 3 5 5.8e-05 0.061 13.7 0.1 1 21 333 353 333 355 0.94 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZBTB14-201 - 449 1e-13 51.1 18.4 4 5 0.00011 0.11 12.9 2.1 1 21 361 381 361 381 0.92 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZBTB14-201 - 449 1e-13 51.1 18.4 5 5 0.04 42 4.7 0.1 1 21 389 409 389 409 0.94 Zinc-finger of C2H2 type # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB14-201.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB14-201.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB14-201.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB14-201.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB14-201.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:57:10 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB14-202.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB14-202.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB14-202.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB14-202.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB14-202.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:57:10 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB14-203.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB14-203.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB14-203.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB14-203.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB14-203.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:57:11 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB14-204.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB14-204.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB14-204.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB14-204.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB14-204.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:57:11 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB14-205.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB14-205.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB14-205.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB14-205.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB14-205.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:57:11 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB14-206.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB14-206.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB14-206.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB14-206.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB14-206.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:57:12 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- BTB PF00651.31 111 ZBTB14-207 - 449 2.9e-28 98.3 0.8 1 1 4.9e-31 5.2e-28 97.5 0.8 1 107 26 128 26 132 0.93 BTB/POZ domain zf-C2H2 PF00096.26 23 ZBTB14-207 - 449 1.2e-25 88.5 31.5 1 5 2.5e-05 0.026 15.0 0.2 3 23 279 299 277 299 0.95 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZBTB14-207 - 449 1.2e-25 88.5 31.5 2 5 4.8e-08 5.1e-05 23.5 1.2 1 23 305 327 305 327 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZBTB14-207 - 449 1.2e-25 88.5 31.5 3 5 2e-08 2.1e-05 24.7 0.2 1 23 333 355 333 355 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZBTB14-207 - 449 1.2e-25 88.5 31.5 4 5 2.4e-07 0.00026 21.3 7.5 1 23 361 383 361 383 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZBTB14-207 - 449 1.2e-25 88.5 31.5 5 5 1.2e-06 0.0013 19.1 0.3 1 23 389 412 389 412 0.95 Zinc finger, C2H2 type zf-H2C2_2 PF13465.6 26 ZBTB14-207 - 449 6.1e-23 80.2 47.2 1 6 0.014 14 6.3 0.1 9 25 272 287 269 288 0.80 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZBTB14-207 - 449 6.1e-23 80.2 47.2 2 6 1.6e-07 0.00016 21.9 1.1 2 26 292 316 291 316 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZBTB14-207 - 449 6.1e-23 80.2 47.2 3 6 2.5e-09 2.6e-06 27.6 1.7 1 24 319 342 319 344 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZBTB14-207 - 449 6.1e-23 80.2 47.2 4 6 5.4e-09 5.7e-06 26.5 3.9 1 26 347 372 347 372 0.97 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZBTB14-207 - 449 6.1e-23 80.2 47.2 5 6 5.9e-09 6.3e-06 26.4 2.1 1 25 375 399 375 400 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZBTB14-207 - 449 6.1e-23 80.2 47.2 6 6 1.1 1.2e+03 0.2 0.2 1 13 403 415 403 419 0.76 Zinc-finger double domain zf-C2H2_4 PF13894.6 24 ZBTB14-207 - 449 1.5e-15 56.6 36.3 1 5 4.9e-06 0.0052 17.5 0.2 2 23 278 299 277 300 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZBTB14-207 - 449 1.5e-15 56.6 36.3 2 5 4.1e-06 0.0043 17.8 1.1 1 23 305 327 305 328 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZBTB14-207 - 449 1.5e-15 56.6 36.3 3 5 7.4e-06 0.0078 17.0 0.3 1 23 333 355 333 356 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZBTB14-207 - 449 1.5e-15 56.6 36.3 4 5 0.00044 0.47 11.4 6.3 1 23 361 383 361 384 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZBTB14-207 - 449 1.5e-15 56.6 36.3 5 5 7.9e-05 0.084 13.8 0.3 1 24 389 412 389 412 0.96 C2H2-type zinc finger zf-C2H2_jaz PF12171.8 27 ZBTB14-207 - 449 6.4e-14 51.8 19.7 1 5 7.9e-06 0.0084 16.4 0.0 2 22 277 297 276 297 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZBTB14-207 - 449 6.4e-14 51.8 19.7 2 5 0.0001 0.11 12.8 0.1 2 22 305 325 304 325 0.95 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZBTB14-207 - 449 6.4e-14 51.8 19.7 3 5 0.00019 0.2 12.0 0.0 2 22 333 353 332 353 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZBTB14-207 - 449 6.4e-14 51.8 19.7 4 5 0.00019 0.2 12.0 2.7 2 22 361 381 360 381 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZBTB14-207 - 449 6.4e-14 51.8 19.7 5 5 0.0032 3.4 8.1 0.1 2 22 389 409 388 410 0.93 Zinc-finger double-stranded RNA-binding zf-met PF12874.7 25 ZBTB14-207 - 449 1e-13 51.1 18.4 1 5 0.00038 0.4 11.1 0.0 3 20 279 296 277 297 0.93 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZBTB14-207 - 449 1e-13 51.1 18.4 2 5 4.8e-06 0.0051 17.2 0.6 1 22 305 326 305 328 0.92 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZBTB14-207 - 449 1e-13 51.1 18.4 3 5 5.8e-05 0.061 13.7 0.1 1 21 333 353 333 355 0.94 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZBTB14-207 - 449 1e-13 51.1 18.4 4 5 0.00011 0.11 12.9 2.1 1 21 361 381 361 381 0.92 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZBTB14-207 - 449 1e-13 51.1 18.4 5 5 0.04 42 4.7 0.1 1 21 389 409 389 409 0.94 Zinc-finger of C2H2 type # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB14-207.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB14-207.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB14-207.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB14-207.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB14-207.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:57:12 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- BTB PF00651.31 111 ZBTB14-208 - 449 2.9e-28 98.3 0.8 1 1 4.9e-31 5.2e-28 97.5 0.8 1 107 26 128 26 132 0.93 BTB/POZ domain zf-C2H2 PF00096.26 23 ZBTB14-208 - 449 1.2e-25 88.5 31.5 1 5 2.5e-05 0.026 15.0 0.2 3 23 279 299 277 299 0.95 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZBTB14-208 - 449 1.2e-25 88.5 31.5 2 5 4.8e-08 5.1e-05 23.5 1.2 1 23 305 327 305 327 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZBTB14-208 - 449 1.2e-25 88.5 31.5 3 5 2e-08 2.1e-05 24.7 0.2 1 23 333 355 333 355 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZBTB14-208 - 449 1.2e-25 88.5 31.5 4 5 2.4e-07 0.00026 21.3 7.5 1 23 361 383 361 383 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZBTB14-208 - 449 1.2e-25 88.5 31.5 5 5 1.2e-06 0.0013 19.1 0.3 1 23 389 412 389 412 0.95 Zinc finger, C2H2 type zf-H2C2_2 PF13465.6 26 ZBTB14-208 - 449 6.1e-23 80.2 47.2 1 6 0.014 14 6.3 0.1 9 25 272 287 269 288 0.80 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZBTB14-208 - 449 6.1e-23 80.2 47.2 2 6 1.6e-07 0.00016 21.9 1.1 2 26 292 316 291 316 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZBTB14-208 - 449 6.1e-23 80.2 47.2 3 6 2.5e-09 2.6e-06 27.6 1.7 1 24 319 342 319 344 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZBTB14-208 - 449 6.1e-23 80.2 47.2 4 6 5.4e-09 5.7e-06 26.5 3.9 1 26 347 372 347 372 0.97 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZBTB14-208 - 449 6.1e-23 80.2 47.2 5 6 5.9e-09 6.3e-06 26.4 2.1 1 25 375 399 375 400 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZBTB14-208 - 449 6.1e-23 80.2 47.2 6 6 1.1 1.2e+03 0.2 0.2 1 13 403 415 403 419 0.76 Zinc-finger double domain zf-C2H2_4 PF13894.6 24 ZBTB14-208 - 449 1.5e-15 56.6 36.3 1 5 4.9e-06 0.0052 17.5 0.2 2 23 278 299 277 300 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZBTB14-208 - 449 1.5e-15 56.6 36.3 2 5 4.1e-06 0.0043 17.8 1.1 1 23 305 327 305 328 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZBTB14-208 - 449 1.5e-15 56.6 36.3 3 5 7.4e-06 0.0078 17.0 0.3 1 23 333 355 333 356 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZBTB14-208 - 449 1.5e-15 56.6 36.3 4 5 0.00044 0.47 11.4 6.3 1 23 361 383 361 384 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZBTB14-208 - 449 1.5e-15 56.6 36.3 5 5 7.9e-05 0.084 13.8 0.3 1 24 389 412 389 412 0.96 C2H2-type zinc finger zf-C2H2_jaz PF12171.8 27 ZBTB14-208 - 449 6.4e-14 51.8 19.7 1 5 7.9e-06 0.0084 16.4 0.0 2 22 277 297 276 297 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZBTB14-208 - 449 6.4e-14 51.8 19.7 2 5 0.0001 0.11 12.8 0.1 2 22 305 325 304 325 0.95 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZBTB14-208 - 449 6.4e-14 51.8 19.7 3 5 0.00019 0.2 12.0 0.0 2 22 333 353 332 353 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZBTB14-208 - 449 6.4e-14 51.8 19.7 4 5 0.00019 0.2 12.0 2.7 2 22 361 381 360 381 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZBTB14-208 - 449 6.4e-14 51.8 19.7 5 5 0.0032 3.4 8.1 0.1 2 22 389 409 388 410 0.93 Zinc-finger double-stranded RNA-binding zf-met PF12874.7 25 ZBTB14-208 - 449 1e-13 51.1 18.4 1 5 0.00038 0.4 11.1 0.0 3 20 279 296 277 297 0.93 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZBTB14-208 - 449 1e-13 51.1 18.4 2 5 4.8e-06 0.0051 17.2 0.6 1 22 305 326 305 328 0.92 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZBTB14-208 - 449 1e-13 51.1 18.4 3 5 5.8e-05 0.061 13.7 0.1 1 21 333 353 333 355 0.94 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZBTB14-208 - 449 1e-13 51.1 18.4 4 5 0.00011 0.11 12.9 2.1 1 21 361 381 361 381 0.92 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZBTB14-208 - 449 1e-13 51.1 18.4 5 5 0.04 42 4.7 0.1 1 21 389 409 389 409 0.94 Zinc-finger of C2H2 type # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB14-208.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB14-208.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB14-208.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB14-208.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB14-208.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:57:13 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZBTB17-201 - 810 9.6e-73 237.6 84.3 1 15 0.011 7.4 7.2 0.2 14 26 305 317 296 317 0.89 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZBTB17-201 - 810 9.6e-73 237.6 84.3 2 15 2.7e-11 1.8e-08 34.4 0.8 1 25 320 344 320 345 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZBTB17-201 - 810 9.6e-73 237.6 84.3 3 15 0.00035 0.24 11.9 3.2 3 24 350 371 348 372 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZBTB17-201 - 810 9.6e-73 237.6 84.3 4 15 1.3e-06 0.00089 19.6 0.6 2 26 377 401 377 401 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZBTB17-201 - 810 9.6e-73 237.6 84.3 5 15 1.2e-10 7.9e-08 32.4 0.3 1 25 404 428 404 429 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZBTB17-201 - 810 9.6e-73 237.6 84.3 6 15 3.2e-05 0.022 15.2 5.7 3 25 434 456 433 457 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZBTB17-201 - 810 9.6e-73 237.6 84.3 7 15 1.4e-06 0.00097 19.5 0.1 1 26 460 485 460 485 0.97 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZBTB17-201 - 810 9.6e-73 237.6 84.3 8 15 2.2e-09 1.5e-06 28.3 0.5 1 25 488 512 488 513 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZBTB17-201 - 810 9.6e-73 237.6 84.3 9 15 1.9e-09 1.3e-06 28.5 0.3 1 25 516 540 516 541 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZBTB17-201 - 810 9.6e-73 237.6 84.3 10 15 2.3e-09 1.6e-06 28.3 0.1 2 25 545 568 544 569 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZBTB17-201 - 810 9.6e-73 237.6 84.3 11 15 8.1e-08 5.6e-05 23.4 0.8 2 26 573 597 572 597 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZBTB17-201 - 810 9.6e-73 237.6 84.3 12 15 3.9e-10 2.7e-07 30.7 0.1 1 25 600 624 600 625 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZBTB17-201 - 810 9.6e-73 237.6 84.3 13 15 0.39 2.7e+02 2.3 0.1 1 12 628 640 628 644 0.85 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZBTB17-201 - 810 9.6e-73 237.6 84.3 14 15 0.082 56 4.4 0.1 15 24 724 733 715 734 0.84 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZBTB17-201 - 810 9.6e-73 237.6 84.3 15 15 1.1 7.6e+02 0.8 0.0 2 10 739 747 738 753 0.86 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZBTB17-201 - 810 2.4e-58 191.5 87.4 1 13 4.8e-08 3.3e-05 24.1 3.7 1 23 306 328 306 328 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZBTB17-201 - 810 2.4e-58 191.5 87.4 2 13 0.0003 0.2 12.2 1.1 1 23 334 356 334 356 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZBTB17-201 - 810 2.4e-58 191.5 87.4 3 13 0.00016 0.11 13.0 0.4 3 23 364 384 362 384 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZBTB17-201 - 810 2.4e-58 191.5 87.4 4 13 9.8e-09 6.7e-06 26.3 0.5 1 23 390 412 390 412 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZBTB17-201 - 810 2.4e-58 191.5 87.4 5 13 2.1e-07 0.00014 22.1 1.2 1 23 418 440 418 440 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZBTB17-201 - 810 2.4e-58 191.5 87.4 6 13 3.6e-07 0.00025 21.3 2.7 1 23 446 468 446 468 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZBTB17-201 - 810 2.4e-58 191.5 87.4 7 13 1.5e-08 1e-05 25.7 1.0 2 23 475 496 474 496 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZBTB17-201 - 810 2.4e-58 191.5 87.4 8 13 2.5e-05 0.017 15.5 0.2 1 23 502 524 502 524 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZBTB17-201 - 810 2.4e-58 191.5 87.4 9 13 3.3e-07 0.00023 21.4 0.5 2 23 531 552 530 552 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZBTB17-201 - 810 2.4e-58 191.5 87.4 10 13 6.2e-08 4.3e-05 23.7 1.3 1 23 558 580 558 580 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZBTB17-201 - 810 2.4e-58 191.5 87.4 11 13 7.5e-06 0.0052 17.2 0.3 1 23 586 608 586 608 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZBTB17-201 - 810 2.4e-58 191.5 87.4 12 13 1e-06 0.00072 19.9 0.4 1 23 614 637 614 637 0.95 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZBTB17-201 - 810 2.4e-58 191.5 87.4 13 13 0.067 46 4.7 0.0 1 23 724 746 724 746 0.93 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZBTB17-201 - 810 9.9e-47 153.6 88.3 1 13 0.00021 0.15 13.0 2.2 1 23 306 328 306 329 0.90 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZBTB17-201 - 810 9.9e-47 153.6 88.3 2 13 0.0001 0.07 14.0 1.6 1 23 334 356 334 357 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZBTB17-201 - 810 9.9e-47 153.6 88.3 3 13 0.0022 1.6 9.8 0.4 2 23 363 384 362 385 0.81 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZBTB17-201 - 810 9.9e-47 153.6 88.3 4 13 8.2e-06 0.0057 17.4 0.4 1 23 390 412 390 413 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZBTB17-201 - 810 9.9e-47 153.6 88.3 5 13 5.8e-07 0.0004 21.0 0.4 1 23 418 440 418 441 0.97 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZBTB17-201 - 810 9.9e-47 153.6 88.3 6 13 5.1e-06 0.0035 18.0 1.5 1 23 446 468 446 469 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZBTB17-201 - 810 9.9e-47 153.6 88.3 7 13 1.1e-06 0.00075 20.1 0.6 2 23 475 496 474 497 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZBTB17-201 - 810 9.9e-47 153.6 88.3 8 13 2.1e-06 0.0014 19.3 0.3 1 23 502 524 502 525 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZBTB17-201 - 810 9.9e-47 153.6 88.3 9 13 0.00012 0.08 13.8 0.8 2 23 531 552 530 553 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZBTB17-201 - 810 9.9e-47 153.6 88.3 10 13 1.2e-05 0.0084 16.9 0.9 1 23 558 580 558 581 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZBTB17-201 - 810 9.9e-47 153.6 88.3 11 13 1.9e-05 0.013 16.3 0.3 1 23 586 608 586 609 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZBTB17-201 - 810 9.9e-47 153.6 88.3 12 13 1.6e-06 0.0011 19.6 0.2 1 24 614 637 614 637 0.97 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZBTB17-201 - 810 9.9e-47 153.6 88.3 13 13 0.00015 0.1 13.5 0.1 1 23 724 746 724 747 0.96 C2H2-type zinc finger BTB PF00651.31 111 ZBTB17-201 - 810 1.9e-28 98.9 0.8 1 1 5.6e-31 3.8e-28 97.9 0.8 1 105 14 110 14 113 0.95 BTB/POZ domain zf-C2H2_11 PF16622.5 29 ZBTB17-201 - 810 5.1e-20 70.9 53.5 1 13 8.6e-05 0.059 13.1 0.3 5 26 306 327 305 328 0.96 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZBTB17-201 - 810 5.1e-20 70.9 53.5 2 13 3.8 2.7e+03 -1.7 0.1 7 15 336 344 334 348 0.83 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZBTB17-201 - 810 5.1e-20 70.9 53.5 3 13 2.7 1.8e+03 -1.2 0.2 7 14 364 371 362 380 0.80 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZBTB17-201 - 810 5.1e-20 70.9 53.5 4 13 1.2e-05 0.0086 15.8 0.1 5 24 390 409 387 412 0.87 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZBTB17-201 - 810 5.1e-20 70.9 53.5 5 13 0.002 1.4 8.8 0.0 5 24 418 437 415 439 0.92 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZBTB17-201 - 810 5.1e-20 70.9 53.5 6 13 0.03 21 5.0 0.1 5 26 446 467 444 468 0.94 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZBTB17-201 - 810 5.1e-20 70.9 53.5 7 13 2.5e-08 1.7e-05 24.5 0.3 5 26 474 495 472 496 0.95 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZBTB17-201 - 810 5.1e-20 70.9 53.5 8 13 2.5e-05 0.018 14.8 0.2 7 26 504 523 502 524 0.96 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZBTB17-201 - 810 5.1e-20 70.9 53.5 9 13 0.00025 0.17 11.7 0.4 5 24 530 549 527 550 0.89 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZBTB17-201 - 810 5.1e-20 70.9 53.5 10 13 2.3 1.6e+03 -1.0 0.2 7 20 560 573 558 578 0.71 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZBTB17-201 - 810 5.1e-20 70.9 53.5 11 13 0.16 1.1e+02 2.7 0.2 5 26 586 607 584 608 0.91 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZBTB17-201 - 810 5.1e-20 70.9 53.5 12 13 0.32 2.2e+02 1.7 0.1 7 28 616 637 614 638 0.87 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZBTB17-201 - 810 5.1e-20 70.9 53.5 13 13 0.042 29 4.5 0.0 7 26 726 745 724 746 0.94 zinc-finger C2H2-type zf-C2H2_jaz PF12171.8 27 ZBTB17-201 - 810 1e-18 67.1 50.1 1 14 7.4 5.1e+03 -2.1 0.2 6 11 23 28 22 29 0.88 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZBTB17-201 - 810 1e-18 67.1 50.1 2 14 0.021 15 6.0 0.6 2 22 306 326 305 326 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZBTB17-201 - 810 1e-18 67.1 50.1 3 14 0.00042 0.29 11.5 0.8 2 24 334 356 333 357 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZBTB17-201 - 810 1e-18 67.1 50.1 4 14 3 2.1e+03 -0.8 0.1 4 11 364 371 362 382 0.81 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZBTB17-201 - 810 1e-18 67.1 50.1 5 14 0.017 12 6.4 0.0 2 21 390 409 389 410 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZBTB17-201 - 810 1e-18 67.1 50.1 6 14 0.0074 5.1 7.5 0.1 4 23 420 439 417 444 0.90 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZBTB17-201 - 810 1e-18 67.1 50.1 7 14 6.8e-05 0.047 14.0 1.4 2 22 446 466 445 466 0.95 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZBTB17-201 - 810 1e-18 67.1 50.1 8 14 0.0008 0.55 10.6 0.0 2 22 474 494 473 494 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZBTB17-201 - 810 1e-18 67.1 50.1 9 14 6.7e-06 0.0046 17.2 0.0 2 22 502 522 501 522 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZBTB17-201 - 810 1e-18 67.1 50.1 10 14 0.063 44 4.5 0.1 4 22 532 550 532 552 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZBTB17-201 - 810 1e-18 67.1 50.1 11 14 0.071 49 4.4 0.0 2 22 558 578 557 578 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZBTB17-201 - 810 1e-18 67.1 50.1 12 14 0.0066 4.5 7.7 0.0 2 21 586 605 585 606 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZBTB17-201 - 810 1e-18 67.1 50.1 13 14 0.15 1e+02 3.3 0.1 4 23 616 635 614 638 0.89 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZBTB17-201 - 810 1e-18 67.1 50.1 14 14 1.4 9.9e+02 0.2 0.1 4 22 726 744 724 744 0.85 Zinc-finger double-stranded RNA-binding zf-met PF12874.7 25 ZBTB17-201 - 810 2.7e-10 40.3 61.2 1 12 0.0072 5 7.7 0.7 2 22 307 327 306 329 0.90 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZBTB17-201 - 810 2.7e-10 40.3 61.2 2 12 0.015 10 6.7 1.1 1 21 334 354 334 356 0.93 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZBTB17-201 - 810 2.7e-10 40.3 61.2 3 12 0.0036 2.5 8.6 0.0 1 19 390 408 390 410 0.95 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZBTB17-201 - 810 2.7e-10 40.3 61.2 4 12 0.085 58 4.3 0.2 1 21 418 438 418 440 0.91 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZBTB17-201 - 810 2.7e-10 40.3 61.2 5 12 0.0002 0.14 12.6 1.2 2 21 447 466 446 468 0.92 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZBTB17-201 - 810 2.7e-10 40.3 61.2 6 12 0.00064 0.44 11.0 0.2 2 21 475 494 474 496 0.92 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZBTB17-201 - 810 2.7e-10 40.3 61.2 7 12 0.0015 1 9.8 0.1 1 21 502 522 502 525 0.89 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZBTB17-201 - 810 2.7e-10 40.3 61.2 8 12 0.023 16 6.0 0.1 3 20 532 549 531 550 0.93 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZBTB17-201 - 810 2.7e-10 40.3 61.2 9 12 0.02 13 6.3 0.7 1 21 558 578 558 580 0.92 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZBTB17-201 - 810 2.7e-10 40.3 61.2 10 12 0.085 59 4.2 0.2 2 19 587 604 586 607 0.91 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZBTB17-201 - 810 2.7e-10 40.3 61.2 11 12 0.7 4.8e+02 1.4 0.0 3 20 616 633 614 635 0.85 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZBTB17-201 - 810 2.7e-10 40.3 61.2 12 12 8.9 6.1e+03 -2.2 0.1 3 21 726 744 724 746 0.68 Zinc-finger of C2H2 type zf-C2H2_6 PF13912.6 27 ZBTB17-201 - 810 2.1e-07 30.8 71.9 1 12 0.14 95 3.2 0.6 2 11 306 315 305 316 0.91 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZBTB17-201 - 810 2.1e-07 30.8 71.9 2 12 0.32 2.2e+02 2.0 1.4 2 12 334 344 334 356 0.91 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZBTB17-201 - 810 2.1e-07 30.8 71.9 3 12 0.001 0.7 10.0 0.9 2 25 362 385 362 387 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZBTB17-201 - 810 2.1e-07 30.8 71.9 4 12 0.061 42 4.3 0.2 1 13 389 401 389 408 0.84 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZBTB17-201 - 810 2.1e-07 30.8 71.9 5 12 0.0027 1.8 8.6 0.4 2 12 418 428 418 429 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZBTB17-201 - 810 2.1e-07 30.8 71.9 6 12 0.011 7.3 6.7 1.3 2 24 446 468 445 469 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZBTB17-201 - 810 2.1e-07 30.8 71.9 7 12 0.0027 1.9 8.6 1.0 3 24 475 496 475 499 0.88 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZBTB17-201 - 810 2.1e-07 30.8 71.9 8 12 0.042 29 4.8 0.2 4 24 532 552 531 555 0.91 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZBTB17-201 - 810 2.1e-07 30.8 71.9 9 12 0.31 2.1e+02 2.1 0.4 2 12 558 568 558 580 0.87 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZBTB17-201 - 810 2.1e-07 30.8 71.9 10 12 0.0014 0.99 9.5 0.4 2 11 586 595 586 604 0.90 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZBTB17-201 - 810 2.1e-07 30.8 71.9 11 12 8.2e-06 0.0056 16.6 0.2 2 26 614 638 614 640 0.90 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZBTB17-201 - 810 2.1e-07 30.8 71.9 12 12 1.5 1.1e+03 -0.2 0.2 2 9 724 731 723 733 0.80 C2H2-type zinc finger # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB17-201.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB17-201.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB17-201.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB17-201.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB17-201.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:57:13 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZBTB17-202 - 803 8.3e-73 237.8 84.3 1 15 0.011 7.3 7.2 0.2 14 26 305 317 296 317 0.89 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZBTB17-202 - 803 8.3e-73 237.8 84.3 2 15 2.9e-11 1.8e-08 34.4 0.8 1 25 320 344 320 345 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZBTB17-202 - 803 8.3e-73 237.8 84.3 3 15 0.00038 0.24 11.9 3.2 3 24 350 371 348 372 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZBTB17-202 - 803 8.3e-73 237.8 84.3 4 15 1.4e-06 0.00088 19.6 0.6 2 26 377 401 377 401 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZBTB17-202 - 803 8.3e-73 237.8 84.3 5 15 1.2e-10 7.9e-08 32.4 0.3 1 25 404 428 404 429 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZBTB17-202 - 803 8.3e-73 237.8 84.3 6 15 3.4e-05 0.022 15.2 5.7 3 25 434 456 433 457 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZBTB17-202 - 803 8.3e-73 237.8 84.3 7 15 1.5e-06 0.00096 19.5 0.1 1 26 460 485 460 485 0.97 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZBTB17-202 - 803 8.3e-73 237.8 84.3 8 15 2.4e-09 1.5e-06 28.3 0.5 1 25 488 512 488 513 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZBTB17-202 - 803 8.3e-73 237.8 84.3 9 15 2e-09 1.3e-06 28.6 0.3 1 25 516 540 516 541 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZBTB17-202 - 803 8.3e-73 237.8 84.3 10 15 2.4e-09 1.6e-06 28.3 0.1 2 25 545 568 544 569 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZBTB17-202 - 803 8.3e-73 237.8 84.3 11 15 8.6e-08 5.5e-05 23.4 0.8 2 26 573 597 572 597 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZBTB17-202 - 803 8.3e-73 237.8 84.3 12 15 4.2e-10 2.7e-07 30.7 0.1 1 25 600 624 600 625 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZBTB17-202 - 803 8.3e-73 237.8 84.3 13 15 0.42 2.7e+02 2.3 0.1 1 12 628 640 628 644 0.85 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZBTB17-202 - 803 8.3e-73 237.8 84.3 14 15 0.087 56 4.4 0.1 15 24 717 726 708 727 0.84 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZBTB17-202 - 803 8.3e-73 237.8 84.3 15 15 1.2 7.6e+02 0.8 0.0 2 10 732 740 731 746 0.86 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZBTB17-202 - 803 2.1e-58 191.6 87.4 1 13 5.1e-08 3.3e-05 24.1 3.7 1 23 306 328 306 328 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZBTB17-202 - 803 2.1e-58 191.6 87.4 2 13 0.00032 0.2 12.2 1.1 1 23 334 356 334 356 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZBTB17-202 - 803 2.1e-58 191.6 87.4 3 13 0.00017 0.11 13.0 0.4 3 23 364 384 362 384 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZBTB17-202 - 803 2.1e-58 191.6 87.4 4 13 1e-08 6.7e-06 26.3 0.5 1 23 390 412 390 412 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZBTB17-202 - 803 2.1e-58 191.6 87.4 5 13 2.2e-07 0.00014 22.1 1.2 1 23 418 440 418 440 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZBTB17-202 - 803 2.1e-58 191.6 87.4 6 13 3.8e-07 0.00025 21.3 2.7 1 23 446 468 446 468 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZBTB17-202 - 803 2.1e-58 191.6 87.4 7 13 1.6e-08 1e-05 25.7 1.0 2 23 475 496 474 496 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZBTB17-202 - 803 2.1e-58 191.6 87.4 8 13 2.7e-05 0.017 15.6 0.2 1 23 502 524 502 524 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZBTB17-202 - 803 2.1e-58 191.6 87.4 9 13 3.6e-07 0.00023 21.5 0.5 2 23 531 552 530 552 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZBTB17-202 - 803 2.1e-58 191.6 87.4 10 13 6.6e-08 4.3e-05 23.7 1.3 1 23 558 580 558 580 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZBTB17-202 - 803 2.1e-58 191.6 87.4 11 13 8e-06 0.0051 17.2 0.3 1 23 586 608 586 608 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZBTB17-202 - 803 2.1e-58 191.6 87.4 12 13 1.1e-06 0.00071 19.9 0.4 1 23 614 637 614 637 0.95 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZBTB17-202 - 803 2.1e-58 191.6 87.4 13 13 0.072 46 4.7 0.0 1 23 717 739 717 739 0.93 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZBTB17-202 - 803 8.6e-47 153.7 88.3 1 13 0.00023 0.15 13.0 2.2 1 23 306 328 306 329 0.90 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZBTB17-202 - 803 8.6e-47 153.7 88.3 2 13 0.00011 0.069 14.0 1.6 1 23 334 356 334 357 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZBTB17-202 - 803 8.6e-47 153.7 88.3 3 13 0.0024 1.5 9.8 0.4 2 23 363 384 362 385 0.81 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZBTB17-202 - 803 8.6e-47 153.7 88.3 4 13 8.8e-06 0.0056 17.4 0.4 1 23 390 412 390 413 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZBTB17-202 - 803 8.6e-47 153.7 88.3 5 13 6.2e-07 0.0004 21.0 0.4 1 23 418 440 418 441 0.97 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZBTB17-202 - 803 8.6e-47 153.7 88.3 6 13 5.5e-06 0.0035 18.1 1.5 1 23 446 468 446 469 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZBTB17-202 - 803 8.6e-47 153.7 88.3 7 13 1.2e-06 0.00074 20.2 0.6 2 23 475 496 474 497 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZBTB17-202 - 803 8.6e-47 153.7 88.3 8 13 2.2e-06 0.0014 19.3 0.3 1 23 502 524 502 525 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZBTB17-202 - 803 8.6e-47 153.7 88.3 9 13 0.00012 0.079 13.8 0.8 2 23 531 552 530 553 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZBTB17-202 - 803 8.6e-47 153.7 88.3 10 13 1.3e-05 0.0083 16.9 0.9 1 23 558 580 558 581 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZBTB17-202 - 803 8.6e-47 153.7 88.3 11 13 2e-05 0.013 16.3 0.3 1 23 586 608 586 609 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZBTB17-202 - 803 8.6e-47 153.7 88.3 12 13 1.7e-06 0.0011 19.6 0.2 1 24 614 637 614 637 0.97 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZBTB17-202 - 803 8.6e-47 153.7 88.3 13 13 0.00016 0.1 13.5 0.1 1 23 717 739 717 740 0.96 C2H2-type zinc finger BTB PF00651.31 111 ZBTB17-202 - 803 1.8e-28 98.9 0.8 1 1 5.9e-31 3.8e-28 97.9 0.8 1 105 14 110 14 113 0.95 BTB/POZ domain zf-C2H2_11 PF16622.5 29 ZBTB17-202 - 803 4.6e-20 71.1 53.5 1 13 9.2e-05 0.059 13.1 0.3 5 26 306 327 305 328 0.96 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZBTB17-202 - 803 4.6e-20 71.1 53.5 2 13 4.1 2.6e+03 -1.7 0.1 7 15 336 344 334 348 0.83 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZBTB17-202 - 803 4.6e-20 71.1 53.5 3 13 2.8 1.8e+03 -1.2 0.2 7 14 364 371 362 380 0.80 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZBTB17-202 - 803 4.6e-20 71.1 53.5 4 13 1.3e-05 0.0085 15.8 0.1 5 24 390 409 387 412 0.87 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZBTB17-202 - 803 4.6e-20 71.1 53.5 5 13 0.0021 1.4 8.8 0.0 5 24 418 437 415 439 0.92 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZBTB17-202 - 803 4.6e-20 71.1 53.5 6 13 0.032 21 5.0 0.1 5 26 446 467 444 468 0.94 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZBTB17-202 - 803 4.6e-20 71.1 53.5 7 13 2.6e-08 1.7e-05 24.5 0.3 5 26 474 495 472 496 0.95 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZBTB17-202 - 803 4.6e-20 71.1 53.5 8 13 2.7e-05 0.017 14.8 0.2 7 26 504 523 502 524 0.96 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZBTB17-202 - 803 4.6e-20 71.1 53.5 9 13 0.00026 0.17 11.7 0.4 5 24 530 549 527 550 0.89 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZBTB17-202 - 803 4.6e-20 71.1 53.5 10 13 2.5 1.6e+03 -1.0 0.2 7 20 560 573 558 578 0.71 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZBTB17-202 - 803 4.6e-20 71.1 53.5 11 13 0.17 1.1e+02 2.7 0.2 5 26 586 607 584 608 0.91 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZBTB17-202 - 803 4.6e-20 71.1 53.5 12 13 0.34 2.2e+02 1.7 0.1 7 28 616 637 614 638 0.87 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZBTB17-202 - 803 4.6e-20 71.1 53.5 13 13 0.045 29 4.6 0.0 7 26 719 738 717 739 0.94 zinc-finger C2H2-type zf-C2H2_jaz PF12171.8 27 ZBTB17-202 - 803 8.9e-19 67.3 50.1 1 14 7.9 5e+03 -2.0 0.2 6 11 23 28 22 29 0.88 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZBTB17-202 - 803 8.9e-19 67.3 50.1 2 14 0.023 14 6.1 0.6 2 22 306 326 305 326 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZBTB17-202 - 803 8.9e-19 67.3 50.1 3 14 0.00045 0.29 11.5 0.8 2 24 334 356 333 357 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZBTB17-202 - 803 8.9e-19 67.3 50.1 4 14 3.2 2.1e+03 -0.8 0.1 4 11 364 371 362 382 0.81 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZBTB17-202 - 803 8.9e-19 67.3 50.1 5 14 0.018 11 6.4 0.0 2 21 390 409 389 410 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZBTB17-202 - 803 8.9e-19 67.3 50.1 6 14 0.0079 5 7.5 0.1 4 23 420 439 417 444 0.90 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZBTB17-202 - 803 8.9e-19 67.3 50.1 7 14 7.3e-05 0.047 14.0 1.4 2 22 446 466 445 466 0.95 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZBTB17-202 - 803 8.9e-19 67.3 50.1 8 14 0.00085 0.54 10.6 0.0 2 22 474 494 473 494 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZBTB17-202 - 803 8.9e-19 67.3 50.1 9 14 7.1e-06 0.0046 17.2 0.0 2 22 502 522 501 522 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZBTB17-202 - 803 8.9e-19 67.3 50.1 10 14 0.067 43 4.5 0.1 4 22 532 550 532 552 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZBTB17-202 - 803 8.9e-19 67.3 50.1 11 14 0.075 48 4.4 0.0 2 22 558 578 557 578 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZBTB17-202 - 803 8.9e-19 67.3 50.1 12 14 0.007 4.5 7.7 0.0 2 21 586 605 585 606 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZBTB17-202 - 803 8.9e-19 67.3 50.1 13 14 0.16 1e+02 3.3 0.1 4 23 616 635 614 638 0.89 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZBTB17-202 - 803 8.9e-19 67.3 50.1 14 14 1.5 9.8e+02 0.2 0.1 4 22 719 737 717 737 0.85 Zinc-finger double-stranded RNA-binding zf-met PF12874.7 25 ZBTB17-202 - 803 2.4e-10 40.5 61.2 1 12 0.0077 4.9 7.7 0.7 2 22 307 327 306 329 0.90 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZBTB17-202 - 803 2.4e-10 40.5 61.2 2 12 0.015 9.9 6.7 1.1 1 21 334 354 334 356 0.93 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZBTB17-202 - 803 2.4e-10 40.5 61.2 3 12 0.0039 2.5 8.6 0.0 1 19 390 408 390 410 0.95 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZBTB17-202 - 803 2.4e-10 40.5 61.2 4 12 0.09 58 4.3 0.2 1 21 418 438 418 440 0.91 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZBTB17-202 - 803 2.4e-10 40.5 61.2 5 12 0.00022 0.14 12.6 1.2 2 21 447 466 446 468 0.92 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZBTB17-202 - 803 2.4e-10 40.5 61.2 6 12 0.00068 0.44 11.0 0.2 2 21 475 494 474 496 0.92 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZBTB17-202 - 803 2.4e-10 40.5 61.2 7 12 0.0016 1 9.9 0.1 1 21 502 522 502 525 0.89 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZBTB17-202 - 803 2.4e-10 40.5 61.2 8 12 0.025 16 6.1 0.1 3 20 532 549 531 550 0.93 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZBTB17-202 - 803 2.4e-10 40.5 61.2 9 12 0.021 13 6.3 0.7 1 21 558 578 558 580 0.92 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZBTB17-202 - 803 2.4e-10 40.5 61.2 10 12 0.091 58 4.3 0.2 2 19 587 604 586 607 0.91 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZBTB17-202 - 803 2.4e-10 40.5 61.2 11 12 0.74 4.7e+02 1.4 0.0 3 20 616 633 614 635 0.85 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZBTB17-202 - 803 2.4e-10 40.5 61.2 12 12 9.5 6.1e+03 -2.1 0.1 3 21 719 737 717 739 0.68 Zinc-finger of C2H2 type zf-C2H2_6 PF13912.6 27 ZBTB17-202 - 803 1.9e-07 30.9 71.9 1 12 0.15 94 3.2 0.6 2 11 306 315 305 316 0.91 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZBTB17-202 - 803 1.9e-07 30.9 71.9 2 12 0.34 2.2e+02 2.0 1.4 2 12 334 344 334 356 0.91 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZBTB17-202 - 803 1.9e-07 30.9 71.9 3 12 0.0011 0.69 10.0 0.9 2 25 362 385 362 387 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZBTB17-202 - 803 1.9e-07 30.9 71.9 4 12 0.065 42 4.3 0.2 1 13 389 401 389 408 0.84 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZBTB17-202 - 803 1.9e-07 30.9 71.9 5 12 0.0029 1.8 8.6 0.4 2 12 418 428 418 429 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZBTB17-202 - 803 1.9e-07 30.9 71.9 6 12 0.011 7.3 6.7 1.3 2 24 446 468 445 469 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZBTB17-202 - 803 1.9e-07 30.9 71.9 7 12 0.0029 1.9 8.6 1.0 3 24 475 496 475 499 0.88 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZBTB17-202 - 803 1.9e-07 30.9 71.9 8 12 0.044 28 4.8 0.2 4 24 532 552 531 555 0.91 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZBTB17-202 - 803 1.9e-07 30.9 71.9 9 12 0.33 2.1e+02 2.1 0.4 2 12 558 568 558 580 0.87 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZBTB17-202 - 803 1.9e-07 30.9 71.9 10 12 0.0015 0.98 9.5 0.4 2 11 586 595 586 604 0.90 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZBTB17-202 - 803 1.9e-07 30.9 71.9 11 12 8.7e-06 0.0056 16.7 0.2 2 26 614 638 614 640 0.90 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZBTB17-202 - 803 1.9e-07 30.9 71.9 12 12 1.6 1e+03 -0.2 0.2 2 9 717 724 716 726 0.80 C2H2-type zinc finger # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB17-202.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB17-202.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB17-202.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB17-202.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB17-202.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:57:14 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB17-203.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB17-203.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB17-203.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB17-203.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB17-203.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:57:14 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB17-204.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB17-204.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB17-204.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB17-204.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB17-204.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:57:14 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB17-205.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB17-205.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB17-205.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB17-205.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB17-205.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:57:15 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB17-206.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB17-206.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB17-206.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB17-206.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB17-206.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:57:15 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZBTB17-207 - 47 3.5e-08 33.5 1.0 1 2 0.062 1.8e+02 2.8 0.0 20 26 2 8 1 8 0.89 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZBTB17-207 - 47 3.5e-08 33.5 1.0 2 2 2.2e-10 6.5e-07 29.5 0.2 2 23 12 33 11 34 0.92 Zinc-finger double domain # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB17-207.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB17-207.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB17-207.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB17-207.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB17-207.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:57:16 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZBTB17-208 - 47 3.5e-08 33.5 1.0 1 2 0.062 1.8e+02 2.8 0.0 20 26 2 8 1 8 0.89 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZBTB17-208 - 47 3.5e-08 33.5 1.0 2 2 2.2e-10 6.5e-07 29.5 0.2 2 23 12 33 11 34 0.92 Zinc-finger double domain # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB17-208.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB17-208.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB17-208.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB17-208.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB17-208.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:57:16 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB17-209.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB17-209.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB17-209.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB17-209.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB17-209.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:57:16 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- BTB PF00651.31 111 ZBTB17-210 - 241 3.1e-29 101.4 0.8 1 1 5.1e-33 4.6e-29 100.9 0.8 1 105 14 110 14 113 0.95 BTB/POZ domain # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB17-210.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB17-210.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB17-210.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB17-210.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB17-210.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:57:17 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZBTB17-211 - 86 1e-10 41.5 9.3 1 2 1.3e-06 0.00065 20.0 5.1 3 25 1 23 1 24 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZBTB17-211 - 86 1e-10 41.5 9.3 2 2 8.3e-08 4e-05 23.8 0.1 1 26 27 52 27 52 0.97 Zinc-finger double domain # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB17-211.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB17-211.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB17-211.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB17-211.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB17-211.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:57:17 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB17-212.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB17-212.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB17-212.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB17-212.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB17-212.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:57:17 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB17-213.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB17-213.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB17-213.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB17-213.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB17-213.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:57:18 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB17-214.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB17-214.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB17-214.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB17-214.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB17-214.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:57:18 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- BTB PF00651.31 111 ZBTB17-215 - 241 3.1e-29 101.4 0.8 1 1 5.1e-33 4.6e-29 100.9 0.8 1 105 14 110 14 113 0.95 BTB/POZ domain # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB17-215.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB17-215.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB17-215.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB17-215.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB17-215.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:57:18 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZBTB17-216 - 721 1.5e-73 240.2 84.3 1 15 0.011 6.5 7.4 0.2 14 26 223 235 214 235 0.89 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZBTB17-216 - 721 1.5e-73 240.2 84.3 2 15 2.7e-11 1.6e-08 34.6 0.8 1 25 238 262 238 263 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZBTB17-216 - 721 1.5e-73 240.2 84.3 3 15 0.00036 0.21 12.1 3.2 3 24 268 289 266 290 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZBTB17-216 - 721 1.5e-73 240.2 84.3 4 15 1.3e-06 0.00077 19.8 0.6 2 26 295 319 295 319 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZBTB17-216 - 721 1.5e-73 240.2 84.3 5 15 1.2e-10 6.9e-08 32.6 0.3 1 25 322 346 322 347 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZBTB17-216 - 721 1.5e-73 240.2 84.3 6 15 3.2e-05 0.019 15.4 5.7 3 25 352 374 351 375 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZBTB17-216 - 721 1.5e-73 240.2 84.3 7 15 1.4e-06 0.00084 19.7 0.1 1 26 378 403 378 403 0.97 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZBTB17-216 - 721 1.5e-73 240.2 84.3 8 15 2.3e-09 1.3e-06 28.5 0.5 1 25 406 430 406 431 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZBTB17-216 - 721 1.5e-73 240.2 84.3 9 15 1.9e-09 1.1e-06 28.7 0.3 1 25 434 458 434 459 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZBTB17-216 - 721 1.5e-73 240.2 84.3 10 15 2.3e-09 1.4e-06 28.5 0.1 2 25 463 486 462 487 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZBTB17-216 - 721 1.5e-73 240.2 84.3 11 15 8.1e-08 4.9e-05 23.6 0.8 2 26 491 515 490 515 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZBTB17-216 - 721 1.5e-73 240.2 84.3 12 15 3.9e-10 2.4e-07 30.9 0.1 1 25 518 542 518 543 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZBTB17-216 - 721 1.5e-73 240.2 84.3 13 15 0.4 2.4e+02 2.4 0.1 1 12 546 558 546 562 0.85 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZBTB17-216 - 721 1.5e-73 240.2 84.3 14 15 0.083 50 4.6 0.1 15 24 635 644 626 645 0.84 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZBTB17-216 - 721 1.5e-73 240.2 84.3 15 15 1.1 6.7e+02 1.0 0.0 2 10 650 658 649 664 0.86 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZBTB17-216 - 721 5e-59 193.6 87.4 1 13 4.8e-08 2.9e-05 24.3 3.7 1 23 224 246 224 246 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZBTB17-216 - 721 5e-59 193.6 87.4 2 13 0.0003 0.18 12.3 1.1 1 23 252 274 252 274 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZBTB17-216 - 721 5e-59 193.6 87.4 3 13 0.00016 0.097 13.2 0.4 3 23 282 302 280 302 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZBTB17-216 - 721 5e-59 193.6 87.4 4 13 9.9e-09 5.9e-06 26.4 0.5 1 23 308 330 308 330 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZBTB17-216 - 721 5e-59 193.6 87.4 5 13 2.1e-07 0.00012 22.3 1.2 1 23 336 358 336 358 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZBTB17-216 - 721 5e-59 193.6 87.4 6 13 3.6e-07 0.00022 21.5 2.7 1 23 364 386 364 386 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZBTB17-216 - 721 5e-59 193.6 87.4 7 13 1.5e-08 9.2e-06 25.8 1.0 2 23 393 414 392 414 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZBTB17-216 - 721 5e-59 193.6 87.4 8 13 2.5e-05 0.015 15.7 0.2 1 23 420 442 420 442 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZBTB17-216 - 721 5e-59 193.6 87.4 9 13 3.4e-07 0.0002 21.6 0.5 2 23 449 470 448 470 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZBTB17-216 - 721 5e-59 193.6 87.4 10 13 6.3e-08 3.8e-05 23.9 1.3 1 23 476 498 476 498 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZBTB17-216 - 721 5e-59 193.6 87.4 11 13 7.5e-06 0.0045 17.4 0.3 1 23 504 526 504 526 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZBTB17-216 - 721 5e-59 193.6 87.4 12 13 1e-06 0.00063 20.1 0.4 1 23 532 555 532 555 0.95 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZBTB17-216 - 721 5e-59 193.6 87.4 13 13 0.068 41 4.9 0.0 1 23 635 657 635 657 0.93 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZBTB17-216 - 721 4.2e-49 160.9 82.2 1 13 0.00022 0.13 13.2 2.2 1 23 224 246 224 247 0.90 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZBTB17-216 - 721 4.2e-49 160.9 82.2 2 13 0.0001 0.061 14.2 1.6 1 23 252 274 252 275 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZBTB17-216 - 721 4.2e-49 160.9 82.2 3 13 0.0023 1.4 10.0 0.4 2 23 281 302 280 303 0.81 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZBTB17-216 - 721 4.2e-49 160.9 82.2 4 13 8.3e-06 0.0049 17.6 0.4 1 23 308 330 308 331 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZBTB17-216 - 721 4.2e-49 160.9 82.2 5 13 5.8e-07 0.00035 21.2 0.4 1 23 336 358 336 359 0.97 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZBTB17-216 - 721 4.2e-49 160.9 82.2 6 13 5.2e-06 0.0031 18.2 1.5 1 23 364 386 364 387 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZBTB17-216 - 721 4.2e-49 160.9 82.2 7 13 1.1e-06 0.00065 20.3 0.6 2 23 393 414 392 415 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZBTB17-216 - 721 4.2e-49 160.9 82.2 8 13 2.1e-06 0.0012 19.5 0.3 1 23 420 442 420 443 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZBTB17-216 - 721 4.2e-49 160.9 82.2 9 13 0.00012 0.07 14.0 0.8 2 23 449 470 448 471 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZBTB17-216 - 721 4.2e-49 160.9 82.2 10 13 1.2e-05 0.0073 17.1 0.9 1 23 476 498 476 499 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZBTB17-216 - 721 4.2e-49 160.9 82.2 11 13 1.9e-05 0.011 16.4 0.3 1 23 504 526 504 527 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZBTB17-216 - 721 4.2e-49 160.9 82.2 12 13 1.6e-06 0.00097 19.8 0.2 1 24 532 555 532 555 0.97 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZBTB17-216 - 721 4.2e-49 160.9 82.2 13 13 0.00015 0.092 13.6 0.1 1 23 635 657 635 658 0.96 C2H2-type zinc finger zf-C2H2_jaz PF12171.8 27 ZBTB17-216 - 721 1.1e-20 73.3 45.0 1 13 0.021 13 6.2 0.6 2 22 224 244 223 244 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZBTB17-216 - 721 1.1e-20 73.3 45.0 2 13 0.00043 0.26 11.6 0.8 2 24 252 274 251 275 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZBTB17-216 - 721 1.1e-20 73.3 45.0 3 13 3.1 1.8e+03 -0.6 0.1 4 11 282 289 280 300 0.81 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZBTB17-216 - 721 1.1e-20 73.3 45.0 4 13 0.017 10 6.6 0.0 2 21 308 327 307 328 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZBTB17-216 - 721 1.1e-20 73.3 45.0 5 13 0.0075 4.5 7.7 0.1 4 23 338 357 335 362 0.90 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZBTB17-216 - 721 1.1e-20 73.3 45.0 6 13 6.9e-05 0.041 14.2 1.4 2 22 364 384 363 384 0.95 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZBTB17-216 - 721 1.1e-20 73.3 45.0 7 13 0.00081 0.48 10.8 0.0 2 22 392 412 391 412 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZBTB17-216 - 721 1.1e-20 73.3 45.0 8 13 6.8e-06 0.004 17.4 0.0 2 22 420 440 419 440 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZBTB17-216 - 721 1.1e-20 73.3 45.0 9 13 0.064 38 4.7 0.1 4 22 450 468 450 470 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZBTB17-216 - 721 1.1e-20 73.3 45.0 10 13 0.072 43 4.6 0.0 2 22 476 496 475 496 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZBTB17-216 - 721 1.1e-20 73.3 45.0 11 13 0.0067 4 7.8 0.0 2 21 504 523 503 524 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZBTB17-216 - 721 1.1e-20 73.3 45.0 12 13 0.15 91 3.5 0.1 4 23 534 553 532 556 0.89 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZBTB17-216 - 721 1.1e-20 73.3 45.0 13 13 1.5 8.7e+02 0.4 0.1 4 22 637 655 635 655 0.85 Zinc-finger double-stranded RNA-binding zf-C2H2_11 PF16622.5 29 ZBTB17-216 - 721 1.4e-20 72.7 53.5 1 13 8.7e-05 0.052 13.3 0.3 5 26 224 245 223 246 0.96 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZBTB17-216 - 721 1.4e-20 72.7 53.5 2 13 3.9 2.3e+03 -1.6 0.1 7 15 254 262 252 266 0.83 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZBTB17-216 - 721 1.4e-20 72.7 53.5 3 13 2.7 1.6e+03 -1.1 0.2 7 14 282 289 280 298 0.80 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZBTB17-216 - 721 1.4e-20 72.7 53.5 4 13 1.3e-05 0.0075 16.0 0.1 5 24 308 327 305 330 0.87 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZBTB17-216 - 721 1.4e-20 72.7 53.5 5 13 0.002 1.2 9.0 0.0 5 24 336 355 333 357 0.92 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZBTB17-216 - 721 1.4e-20 72.7 53.5 6 13 0.031 18 5.2 0.1 5 26 364 385 362 386 0.94 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZBTB17-216 - 721 1.4e-20 72.7 53.5 7 13 2.5e-08 1.5e-05 24.7 0.3 5 26 392 413 390 414 0.95 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZBTB17-216 - 721 1.4e-20 72.7 53.5 8 13 2.6e-05 0.015 15.0 0.2 7 26 422 441 420 442 0.96 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZBTB17-216 - 721 1.4e-20 72.7 53.5 9 13 0.00025 0.15 11.9 0.4 5 24 448 467 445 468 0.89 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZBTB17-216 - 721 1.4e-20 72.7 53.5 10 13 2.4 1.4e+03 -0.9 0.2 7 20 478 491 476 496 0.71 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZBTB17-216 - 721 1.4e-20 72.7 53.5 11 13 0.16 97 2.9 0.2 5 26 504 525 502 526 0.91 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZBTB17-216 - 721 1.4e-20 72.7 53.5 12 13 0.33 1.9e+02 1.9 0.1 7 28 534 555 532 556 0.87 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZBTB17-216 - 721 1.4e-20 72.7 53.5 13 13 0.042 25 4.7 0.0 7 26 637 656 635 657 0.94 zinc-finger C2H2-type zf-met PF12874.7 25 ZBTB17-216 - 721 7.6e-11 42.0 61.2 1 12 0.0073 4.4 7.8 0.7 2 22 225 245 224 247 0.90 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZBTB17-216 - 721 7.6e-11 42.0 61.2 2 12 0.015 8.8 6.9 1.1 1 21 252 272 252 274 0.93 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZBTB17-216 - 721 7.6e-11 42.0 61.2 3 12 0.0037 2.2 8.8 0.0 1 19 308 326 308 328 0.95 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZBTB17-216 - 721 7.6e-11 42.0 61.2 4 12 0.086 51 4.4 0.2 1 21 336 356 336 358 0.91 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZBTB17-216 - 721 7.6e-11 42.0 61.2 5 12 0.00021 0.12 12.8 1.2 2 21 365 384 364 386 0.92 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZBTB17-216 - 721 7.6e-11 42.0 61.2 6 12 0.00065 0.39 11.2 0.2 2 21 393 412 392 414 0.92 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZBTB17-216 - 721 7.6e-11 42.0 61.2 7 12 0.0015 0.9 10.0 0.1 1 21 420 440 420 443 0.89 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZBTB17-216 - 721 7.6e-11 42.0 61.2 8 12 0.024 14 6.2 0.1 3 20 450 467 449 468 0.93 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZBTB17-216 - 721 7.6e-11 42.0 61.2 9 12 0.02 12 6.5 0.7 1 21 476 496 476 498 0.92 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZBTB17-216 - 721 7.6e-11 42.0 61.2 10 12 0.087 52 4.4 0.2 2 19 505 522 504 525 0.91 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZBTB17-216 - 721 7.6e-11 42.0 61.2 11 12 0.7 4.2e+02 1.5 0.0 3 20 534 551 532 553 0.85 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZBTB17-216 - 721 7.6e-11 42.0 61.2 12 12 9 5.4e+03 -2.0 0.1 3 21 637 655 635 657 0.68 Zinc-finger of C2H2 type zf-C2H2_6 PF13912.6 27 ZBTB17-216 - 721 4.9e-08 32.8 71.9 1 12 0.14 83 3.3 0.6 2 11 224 233 223 234 0.91 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZBTB17-216 - 721 4.9e-08 32.8 71.9 2 12 0.32 1.9e+02 2.2 1.4 2 12 252 262 252 274 0.91 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZBTB17-216 - 721 4.9e-08 32.8 71.9 3 12 0.001 0.61 10.2 0.9 2 25 280 303 280 305 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZBTB17-216 - 721 4.9e-08 32.8 71.9 4 12 0.062 37 4.5 0.2 1 13 307 319 307 326 0.84 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZBTB17-216 - 721 4.9e-08 32.8 71.9 5 12 0.0027 1.6 8.8 0.4 2 12 336 346 336 347 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZBTB17-216 - 721 4.9e-08 32.8 71.9 6 12 0.011 6.4 6.9 1.3 2 24 364 386 363 387 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZBTB17-216 - 721 4.9e-08 32.8 71.9 7 12 0.0028 1.7 8.8 1.0 3 24 393 414 393 417 0.88 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZBTB17-216 - 721 4.9e-08 32.8 71.9 8 12 0.042 25 5.0 0.2 4 24 450 470 449 473 0.91 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZBTB17-216 - 721 4.9e-08 32.8 71.9 9 12 0.31 1.9e+02 2.2 0.4 2 12 476 486 476 498 0.87 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZBTB17-216 - 721 4.9e-08 32.8 71.9 10 12 0.0015 0.87 9.7 0.4 2 11 504 513 504 522 0.90 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZBTB17-216 - 721 4.9e-08 32.8 71.9 11 12 8.2e-06 0.0049 16.8 0.2 2 26 532 556 532 558 0.90 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZBTB17-216 - 721 4.9e-08 32.8 71.9 12 12 1.6 9.3e+02 0.0 0.2 2 9 635 642 634 644 0.80 C2H2-type zinc finger # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB17-216.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB17-216.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB17-216.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB17-216.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB17-216.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:57:19 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- BTB PF00651.31 111 ZBTB18-201 - 531 2.3e-27 95.4 1.3 1 1 4.2e-30 3.9e-27 94.7 1.3 1 110 23 129 23 130 0.96 BTB/POZ domain zf-H2C2_2 PF13465.6 26 ZBTB18-201 - 531 5.6e-15 55.0 26.3 1 5 0.0064 6 7.5 0.1 15 24 379 388 374 390 0.88 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZBTB18-201 - 531 5.6e-15 55.0 26.3 2 5 0.0011 1.1 9.9 0.2 1 25 397 429 397 430 0.73 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZBTB18-201 - 531 5.6e-15 55.0 26.3 3 5 1.2e-10 1.1e-07 31.9 1.9 2 24 434 456 433 458 0.97 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZBTB18-201 - 531 5.6e-15 55.0 26.3 4 5 1.4e-06 0.0013 19.1 1.1 1 25 461 485 461 486 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZBTB18-201 - 531 5.6e-15 55.0 26.3 5 5 0.47 4.4e+02 1.6 0.5 1 9 489 498 489 498 0.83 Zinc-finger double domain zf-C2H2_4 PF13894.6 24 ZBTB18-201 - 531 8.2e-15 54.2 32.6 1 5 5.7 5.4e+03 -1.2 0.0 6 21 2 17 1 21 0.71 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZBTB18-201 - 531 8.2e-15 54.2 32.6 2 5 2.8e-06 0.0027 18.4 0.9 1 23 379 401 379 402 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZBTB18-201 - 531 8.2e-15 54.2 32.6 3 5 3.3e-07 0.00032 21.3 3.1 2 23 420 441 419 442 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZBTB18-201 - 531 8.2e-15 54.2 32.6 4 5 1.5e-05 0.014 16.1 1.8 1 23 447 469 447 470 0.91 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZBTB18-201 - 531 8.2e-15 54.2 32.6 5 5 1.8e-05 0.017 15.9 2.2 1 24 475 498 475 498 0.94 C2H2-type zinc finger zf-C2H2 PF00096.26 23 ZBTB18-201 - 531 2e-14 53.1 31.8 1 4 4.1e-06 0.0038 17.6 0.6 1 23 379 401 379 401 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZBTB18-201 - 531 2e-14 53.1 31.8 2 4 0.0002 0.19 12.3 4.7 2 23 420 441 420 441 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZBTB18-201 - 531 2e-14 53.1 31.8 3 4 1.1e-06 0.001 19.4 2.3 1 23 447 469 447 469 0.95 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZBTB18-201 - 531 2e-14 53.1 31.8 4 4 8.5e-07 0.00081 19.7 2.4 1 23 475 498 475 498 0.95 Zinc finger, C2H2 type # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB18-201.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB18-201.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB18-201.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB18-201.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB18-201.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:57:19 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- BTB PF00651.31 111 ZBTB18-202 - 522 2.2e-27 95.5 1.3 1 1 4.3e-30 3.8e-27 94.7 1.3 1 110 14 120 14 121 0.96 BTB/POZ domain zf-C2H2_4 PF13894.6 24 ZBTB18-202 - 522 2e-15 56.1 29.8 1 4 2.9e-06 0.0026 18.4 0.9 1 23 370 392 370 393 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZBTB18-202 - 522 2e-15 56.1 29.8 2 4 3.4e-07 0.00031 21.3 3.1 2 23 411 432 410 433 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZBTB18-202 - 522 2e-15 56.1 29.8 3 4 1.6e-05 0.014 16.2 1.8 1 23 438 460 438 461 0.91 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZBTB18-202 - 522 2e-15 56.1 29.8 4 4 1.9e-05 0.017 15.9 2.2 1 24 466 489 466 489 0.94 C2H2-type zinc finger zf-H2C2_2 PF13465.6 26 ZBTB18-202 - 522 5.3e-15 55.1 26.3 1 5 0.0066 5.9 7.5 0.1 15 24 370 379 365 381 0.88 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZBTB18-202 - 522 5.3e-15 55.1 26.3 2 5 0.0012 1 9.9 0.2 1 25 388 420 388 421 0.73 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZBTB18-202 - 522 5.3e-15 55.1 26.3 3 5 1.2e-10 1.1e-07 31.9 1.9 2 24 425 447 424 449 0.97 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZBTB18-202 - 522 5.3e-15 55.1 26.3 4 5 1.4e-06 0.0013 19.1 1.1 1 25 452 476 452 477 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZBTB18-202 - 522 5.3e-15 55.1 26.3 5 5 0.48 4.3e+02 1.6 0.5 1 9 480 489 480 489 0.83 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZBTB18-202 - 522 2.2e-14 53.0 31.8 1 4 4.2e-06 0.0037 17.6 0.6 1 23 370 392 370 392 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZBTB18-202 - 522 2.2e-14 53.0 31.8 2 4 0.0002 0.18 12.3 4.7 2 23 411 432 411 432 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZBTB18-202 - 522 2.2e-14 53.0 31.8 3 4 1.1e-06 0.001 19.4 2.3 1 23 438 460 438 460 0.95 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZBTB18-202 - 522 2.2e-14 53.0 31.8 4 4 8.8e-07 0.00079 19.8 2.4 1 23 466 489 466 489 0.95 Zinc finger, C2H2 type # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB18-202.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB18-202.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB18-202.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB18-202.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB18-202.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:57:20 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- BTB PF00651.31 111 ZBTB20-201 - 668 5.9e-24 84.4 0.1 1 2 1.6e-26 1.6e-23 83.0 0.0 1 110 21 123 21 124 0.93 BTB/POZ domain BTB PF00651.31 111 ZBTB20-201 - 668 5.9e-24 84.4 0.1 2 2 6.1 6.1e+03 -2.5 0.0 35 54 519 537 515 546 0.76 BTB/POZ domain zf-C2H2 PF00096.26 23 ZBTB20-201 - 668 5.3e-23 80.1 38.9 1 5 2.8e-07 0.00028 21.2 1.6 1 23 505 527 505 527 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZBTB20-201 - 668 5.3e-23 80.1 38.9 2 5 2e-06 0.002 18.5 1.8 1 23 533 555 533 555 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZBTB20-201 - 668 5.3e-23 80.1 38.9 3 5 9.2e-10 9.1e-07 29.0 1.9 1 23 561 583 561 583 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZBTB20-201 - 668 5.3e-23 80.1 38.9 4 5 1.8e-06 0.0018 18.6 2.4 1 23 589 611 589 611 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZBTB20-201 - 668 5.3e-23 80.1 38.9 5 5 9.8e-06 0.0097 16.3 0.2 1 23 642 664 642 664 0.99 Zinc finger, C2H2 type zf-H2C2_2 PF13465.6 26 ZBTB20-201 - 668 2.3e-21 75.2 39.3 1 6 6.1e-06 0.0061 16.9 0.3 12 25 502 515 493 516 0.85 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZBTB20-201 - 668 2.3e-21 75.2 39.3 2 6 2.1e-08 2.1e-05 24.7 0.9 1 24 519 542 519 543 0.89 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZBTB20-201 - 668 2.3e-21 75.2 39.3 3 6 1.6e-08 1.6e-05 25.1 0.2 2 25 548 571 547 572 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZBTB20-201 - 668 2.3e-21 75.2 39.3 4 6 1.7e-09 1.7e-06 28.2 2.7 1 26 575 600 575 600 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZBTB20-201 - 668 2.3e-21 75.2 39.3 5 6 0.15 1.5e+02 3.1 1.9 14 25 641 652 604 653 0.79 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZBTB20-201 - 668 2.3e-21 75.2 39.3 6 6 2 2e+03 -0.5 0.1 2 9 657 664 656 667 0.85 Zinc-finger double domain zf-C2H2_4 PF13894.6 24 ZBTB20-201 - 668 1.6e-16 59.6 33.3 1 5 1.4e-05 0.014 16.2 1.1 1 23 505 527 505 528 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZBTB20-201 - 668 1.6e-16 59.6 33.3 2 5 0.00043 0.43 11.5 1.7 1 23 533 555 533 556 0.90 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZBTB20-201 - 668 1.6e-16 59.6 33.3 3 5 1.9e-07 0.00019 22.0 1.5 1 23 561 583 561 584 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZBTB20-201 - 668 1.6e-16 59.6 33.3 4 5 0.00013 0.13 13.2 2.4 1 23 589 611 589 612 0.87 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZBTB20-201 - 668 1.6e-16 59.6 33.3 5 5 1.9e-05 0.019 15.7 0.2 1 23 642 664 642 665 0.96 C2H2-type zinc finger zf-met PF12874.7 25 ZBTB20-201 - 668 6.4e-09 35.9 27.0 1 5 1.2e-05 0.012 16.0 1.5 1 20 505 524 505 525 0.95 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZBTB20-201 - 668 6.4e-09 35.9 27.0 2 5 3.5 3.5e+03 -1.4 0.3 2 11 534 543 533 553 0.68 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZBTB20-201 - 668 6.4e-09 35.9 27.0 3 5 3.1e-06 0.0031 17.8 1.1 1 21 561 581 561 581 0.96 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZBTB20-201 - 668 6.4e-09 35.9 27.0 4 5 0.00011 0.11 12.9 0.8 1 20 589 608 589 609 0.93 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZBTB20-201 - 668 6.4e-09 35.9 27.0 5 5 0.024 24 5.5 0.1 1 21 642 662 642 662 0.94 Zinc-finger of C2H2 type # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB20-201.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB20-201.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB20-201.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB20-201.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB20-201.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:57:20 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- BTB PF00651.31 111 ZBTB20-202 - 668 5.9e-24 84.4 0.1 1 2 1.6e-26 1.6e-23 83.0 0.0 1 110 21 123 21 124 0.93 BTB/POZ domain BTB PF00651.31 111 ZBTB20-202 - 668 5.9e-24 84.4 0.1 2 2 6.1 6.1e+03 -2.5 0.0 35 54 519 537 515 546 0.76 BTB/POZ domain zf-C2H2 PF00096.26 23 ZBTB20-202 - 668 5.3e-23 80.1 38.9 1 5 2.8e-07 0.00028 21.2 1.6 1 23 505 527 505 527 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZBTB20-202 - 668 5.3e-23 80.1 38.9 2 5 2e-06 0.002 18.5 1.8 1 23 533 555 533 555 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZBTB20-202 - 668 5.3e-23 80.1 38.9 3 5 9.2e-10 9.1e-07 29.0 1.9 1 23 561 583 561 583 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZBTB20-202 - 668 5.3e-23 80.1 38.9 4 5 1.8e-06 0.0018 18.6 2.4 1 23 589 611 589 611 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZBTB20-202 - 668 5.3e-23 80.1 38.9 5 5 9.8e-06 0.0097 16.3 0.2 1 23 642 664 642 664 0.99 Zinc finger, C2H2 type zf-H2C2_2 PF13465.6 26 ZBTB20-202 - 668 2.3e-21 75.2 39.3 1 6 6.1e-06 0.0061 16.9 0.3 12 25 502 515 493 516 0.85 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZBTB20-202 - 668 2.3e-21 75.2 39.3 2 6 2.1e-08 2.1e-05 24.7 0.9 1 24 519 542 519 543 0.89 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZBTB20-202 - 668 2.3e-21 75.2 39.3 3 6 1.6e-08 1.6e-05 25.1 0.2 2 25 548 571 547 572 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZBTB20-202 - 668 2.3e-21 75.2 39.3 4 6 1.7e-09 1.7e-06 28.2 2.7 1 26 575 600 575 600 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZBTB20-202 - 668 2.3e-21 75.2 39.3 5 6 0.15 1.5e+02 3.1 1.9 14 25 641 652 604 653 0.79 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZBTB20-202 - 668 2.3e-21 75.2 39.3 6 6 2 2e+03 -0.5 0.1 2 9 657 664 656 667 0.85 Zinc-finger double domain zf-C2H2_4 PF13894.6 24 ZBTB20-202 - 668 1.6e-16 59.6 33.3 1 5 1.4e-05 0.014 16.2 1.1 1 23 505 527 505 528 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZBTB20-202 - 668 1.6e-16 59.6 33.3 2 5 0.00043 0.43 11.5 1.7 1 23 533 555 533 556 0.90 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZBTB20-202 - 668 1.6e-16 59.6 33.3 3 5 1.9e-07 0.00019 22.0 1.5 1 23 561 583 561 584 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZBTB20-202 - 668 1.6e-16 59.6 33.3 4 5 0.00013 0.13 13.2 2.4 1 23 589 611 589 612 0.87 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZBTB20-202 - 668 1.6e-16 59.6 33.3 5 5 1.9e-05 0.019 15.7 0.2 1 23 642 664 642 665 0.96 C2H2-type zinc finger zf-met PF12874.7 25 ZBTB20-202 - 668 6.4e-09 35.9 27.0 1 5 1.2e-05 0.012 16.0 1.5 1 20 505 524 505 525 0.95 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZBTB20-202 - 668 6.4e-09 35.9 27.0 2 5 3.5 3.5e+03 -1.4 0.3 2 11 534 543 533 553 0.68 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZBTB20-202 - 668 6.4e-09 35.9 27.0 3 5 3.1e-06 0.0031 17.8 1.1 1 21 561 581 561 581 0.96 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZBTB20-202 - 668 6.4e-09 35.9 27.0 4 5 0.00011 0.11 12.9 0.8 1 20 589 608 589 609 0.93 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZBTB20-202 - 668 6.4e-09 35.9 27.0 5 5 0.024 24 5.5 0.1 1 21 642 662 642 662 0.94 Zinc-finger of C2H2 type # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB20-202.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB20-202.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB20-202.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB20-202.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB20-202.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:57:21 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- BTB PF00651.31 111 ZBTB20-203 - 668 5.9e-24 84.4 0.1 1 2 1.6e-26 1.6e-23 83.0 0.0 1 110 21 123 21 124 0.93 BTB/POZ domain BTB PF00651.31 111 ZBTB20-203 - 668 5.9e-24 84.4 0.1 2 2 6.1 6.1e+03 -2.5 0.0 35 54 519 537 515 546 0.76 BTB/POZ domain zf-C2H2 PF00096.26 23 ZBTB20-203 - 668 5.3e-23 80.1 38.9 1 5 2.8e-07 0.00028 21.2 1.6 1 23 505 527 505 527 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZBTB20-203 - 668 5.3e-23 80.1 38.9 2 5 2e-06 0.002 18.5 1.8 1 23 533 555 533 555 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZBTB20-203 - 668 5.3e-23 80.1 38.9 3 5 9.2e-10 9.1e-07 29.0 1.9 1 23 561 583 561 583 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZBTB20-203 - 668 5.3e-23 80.1 38.9 4 5 1.8e-06 0.0018 18.6 2.4 1 23 589 611 589 611 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZBTB20-203 - 668 5.3e-23 80.1 38.9 5 5 9.8e-06 0.0097 16.3 0.2 1 23 642 664 642 664 0.99 Zinc finger, C2H2 type zf-H2C2_2 PF13465.6 26 ZBTB20-203 - 668 2.3e-21 75.2 39.3 1 6 6.1e-06 0.0061 16.9 0.3 12 25 502 515 493 516 0.85 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZBTB20-203 - 668 2.3e-21 75.2 39.3 2 6 2.1e-08 2.1e-05 24.7 0.9 1 24 519 542 519 543 0.89 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZBTB20-203 - 668 2.3e-21 75.2 39.3 3 6 1.6e-08 1.6e-05 25.1 0.2 2 25 548 571 547 572 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZBTB20-203 - 668 2.3e-21 75.2 39.3 4 6 1.7e-09 1.7e-06 28.2 2.7 1 26 575 600 575 600 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZBTB20-203 - 668 2.3e-21 75.2 39.3 5 6 0.15 1.5e+02 3.1 1.9 14 25 641 652 604 653 0.79 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZBTB20-203 - 668 2.3e-21 75.2 39.3 6 6 2 2e+03 -0.5 0.1 2 9 657 664 656 667 0.85 Zinc-finger double domain zf-C2H2_4 PF13894.6 24 ZBTB20-203 - 668 1.6e-16 59.6 33.3 1 5 1.4e-05 0.014 16.2 1.1 1 23 505 527 505 528 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZBTB20-203 - 668 1.6e-16 59.6 33.3 2 5 0.00043 0.43 11.5 1.7 1 23 533 555 533 556 0.90 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZBTB20-203 - 668 1.6e-16 59.6 33.3 3 5 1.9e-07 0.00019 22.0 1.5 1 23 561 583 561 584 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZBTB20-203 - 668 1.6e-16 59.6 33.3 4 5 0.00013 0.13 13.2 2.4 1 23 589 611 589 612 0.87 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZBTB20-203 - 668 1.6e-16 59.6 33.3 5 5 1.9e-05 0.019 15.7 0.2 1 23 642 664 642 665 0.96 C2H2-type zinc finger zf-met PF12874.7 25 ZBTB20-203 - 668 6.4e-09 35.9 27.0 1 5 1.2e-05 0.012 16.0 1.5 1 20 505 524 505 525 0.95 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZBTB20-203 - 668 6.4e-09 35.9 27.0 2 5 3.5 3.5e+03 -1.4 0.3 2 11 534 543 533 553 0.68 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZBTB20-203 - 668 6.4e-09 35.9 27.0 3 5 3.1e-06 0.0031 17.8 1.1 1 21 561 581 561 581 0.96 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZBTB20-203 - 668 6.4e-09 35.9 27.0 4 5 0.00011 0.11 12.9 0.8 1 20 589 608 589 609 0.93 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZBTB20-203 - 668 6.4e-09 35.9 27.0 5 5 0.024 24 5.5 0.1 1 21 642 662 642 662 0.94 Zinc-finger of C2H2 type # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB20-203.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB20-203.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB20-203.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB20-203.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB20-203.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:57:21 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB20-204.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB20-204.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB20-204.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB20-204.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB20-204.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:57:21 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB20-205.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB20-205.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB20-205.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB20-205.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB20-205.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:57:22 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- BTB PF00651.31 111 ZBTB20-206 - 668 5.9e-24 84.4 0.1 1 2 1.6e-26 1.6e-23 83.0 0.0 1 110 21 123 21 124 0.93 BTB/POZ domain BTB PF00651.31 111 ZBTB20-206 - 668 5.9e-24 84.4 0.1 2 2 6.1 6.1e+03 -2.5 0.0 35 54 519 537 515 546 0.76 BTB/POZ domain zf-C2H2 PF00096.26 23 ZBTB20-206 - 668 5.3e-23 80.1 38.9 1 5 2.8e-07 0.00028 21.2 1.6 1 23 505 527 505 527 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZBTB20-206 - 668 5.3e-23 80.1 38.9 2 5 2e-06 0.002 18.5 1.8 1 23 533 555 533 555 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZBTB20-206 - 668 5.3e-23 80.1 38.9 3 5 9.2e-10 9.1e-07 29.0 1.9 1 23 561 583 561 583 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZBTB20-206 - 668 5.3e-23 80.1 38.9 4 5 1.8e-06 0.0018 18.6 2.4 1 23 589 611 589 611 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZBTB20-206 - 668 5.3e-23 80.1 38.9 5 5 9.8e-06 0.0097 16.3 0.2 1 23 642 664 642 664 0.99 Zinc finger, C2H2 type zf-H2C2_2 PF13465.6 26 ZBTB20-206 - 668 2.3e-21 75.2 39.3 1 6 6.1e-06 0.0061 16.9 0.3 12 25 502 515 493 516 0.85 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZBTB20-206 - 668 2.3e-21 75.2 39.3 2 6 2.1e-08 2.1e-05 24.7 0.9 1 24 519 542 519 543 0.89 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZBTB20-206 - 668 2.3e-21 75.2 39.3 3 6 1.6e-08 1.6e-05 25.1 0.2 2 25 548 571 547 572 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZBTB20-206 - 668 2.3e-21 75.2 39.3 4 6 1.7e-09 1.7e-06 28.2 2.7 1 26 575 600 575 600 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZBTB20-206 - 668 2.3e-21 75.2 39.3 5 6 0.15 1.5e+02 3.1 1.9 14 25 641 652 604 653 0.79 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZBTB20-206 - 668 2.3e-21 75.2 39.3 6 6 2 2e+03 -0.5 0.1 2 9 657 664 656 667 0.85 Zinc-finger double domain zf-C2H2_4 PF13894.6 24 ZBTB20-206 - 668 1.6e-16 59.6 33.3 1 5 1.4e-05 0.014 16.2 1.1 1 23 505 527 505 528 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZBTB20-206 - 668 1.6e-16 59.6 33.3 2 5 0.00043 0.43 11.5 1.7 1 23 533 555 533 556 0.90 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZBTB20-206 - 668 1.6e-16 59.6 33.3 3 5 1.9e-07 0.00019 22.0 1.5 1 23 561 583 561 584 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZBTB20-206 - 668 1.6e-16 59.6 33.3 4 5 0.00013 0.13 13.2 2.4 1 23 589 611 589 612 0.87 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZBTB20-206 - 668 1.6e-16 59.6 33.3 5 5 1.9e-05 0.019 15.7 0.2 1 23 642 664 642 665 0.96 C2H2-type zinc finger zf-met PF12874.7 25 ZBTB20-206 - 668 6.4e-09 35.9 27.0 1 5 1.2e-05 0.012 16.0 1.5 1 20 505 524 505 525 0.95 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZBTB20-206 - 668 6.4e-09 35.9 27.0 2 5 3.5 3.5e+03 -1.4 0.3 2 11 534 543 533 553 0.68 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZBTB20-206 - 668 6.4e-09 35.9 27.0 3 5 3.1e-06 0.0031 17.8 1.1 1 21 561 581 561 581 0.96 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZBTB20-206 - 668 6.4e-09 35.9 27.0 4 5 0.00011 0.11 12.9 0.8 1 20 589 608 589 609 0.93 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZBTB20-206 - 668 6.4e-09 35.9 27.0 5 5 0.024 24 5.5 0.1 1 21 642 662 642 662 0.94 Zinc-finger of C2H2 type # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB20-206.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB20-206.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB20-206.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB20-206.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB20-206.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:57:22 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB20-207.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB20-207.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB20-207.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB20-207.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB20-207.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:57:22 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB20-208.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB20-208.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB20-208.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB20-208.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB20-208.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:57:23 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB20-209.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB20-209.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB20-209.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB20-209.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB20-209.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:57:23 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB20-210.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB20-210.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB20-210.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB20-210.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB20-210.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:57:23 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- BTB PF00651.31 111 ZBTB20-211 - 668 5.9e-24 84.4 0.1 1 2 1.6e-26 1.6e-23 83.0 0.0 1 110 21 123 21 124 0.93 BTB/POZ domain BTB PF00651.31 111 ZBTB20-211 - 668 5.9e-24 84.4 0.1 2 2 6.1 6.1e+03 -2.5 0.0 35 54 519 537 515 546 0.76 BTB/POZ domain zf-C2H2 PF00096.26 23 ZBTB20-211 - 668 5.3e-23 80.1 38.9 1 5 2.8e-07 0.00028 21.2 1.6 1 23 505 527 505 527 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZBTB20-211 - 668 5.3e-23 80.1 38.9 2 5 2e-06 0.002 18.5 1.8 1 23 533 555 533 555 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZBTB20-211 - 668 5.3e-23 80.1 38.9 3 5 9.2e-10 9.1e-07 29.0 1.9 1 23 561 583 561 583 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZBTB20-211 - 668 5.3e-23 80.1 38.9 4 5 1.8e-06 0.0018 18.6 2.4 1 23 589 611 589 611 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZBTB20-211 - 668 5.3e-23 80.1 38.9 5 5 9.8e-06 0.0097 16.3 0.2 1 23 642 664 642 664 0.99 Zinc finger, C2H2 type zf-H2C2_2 PF13465.6 26 ZBTB20-211 - 668 2.3e-21 75.2 39.3 1 6 6.1e-06 0.0061 16.9 0.3 12 25 502 515 493 516 0.85 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZBTB20-211 - 668 2.3e-21 75.2 39.3 2 6 2.1e-08 2.1e-05 24.7 0.9 1 24 519 542 519 543 0.89 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZBTB20-211 - 668 2.3e-21 75.2 39.3 3 6 1.6e-08 1.6e-05 25.1 0.2 2 25 548 571 547 572 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZBTB20-211 - 668 2.3e-21 75.2 39.3 4 6 1.7e-09 1.7e-06 28.2 2.7 1 26 575 600 575 600 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZBTB20-211 - 668 2.3e-21 75.2 39.3 5 6 0.15 1.5e+02 3.1 1.9 14 25 641 652 604 653 0.79 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZBTB20-211 - 668 2.3e-21 75.2 39.3 6 6 2 2e+03 -0.5 0.1 2 9 657 664 656 667 0.85 Zinc-finger double domain zf-C2H2_4 PF13894.6 24 ZBTB20-211 - 668 1.6e-16 59.6 33.3 1 5 1.4e-05 0.014 16.2 1.1 1 23 505 527 505 528 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZBTB20-211 - 668 1.6e-16 59.6 33.3 2 5 0.00043 0.43 11.5 1.7 1 23 533 555 533 556 0.90 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZBTB20-211 - 668 1.6e-16 59.6 33.3 3 5 1.9e-07 0.00019 22.0 1.5 1 23 561 583 561 584 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZBTB20-211 - 668 1.6e-16 59.6 33.3 4 5 0.00013 0.13 13.2 2.4 1 23 589 611 589 612 0.87 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZBTB20-211 - 668 1.6e-16 59.6 33.3 5 5 1.9e-05 0.019 15.7 0.2 1 23 642 664 642 665 0.96 C2H2-type zinc finger zf-met PF12874.7 25 ZBTB20-211 - 668 6.4e-09 35.9 27.0 1 5 1.2e-05 0.012 16.0 1.5 1 20 505 524 505 525 0.95 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZBTB20-211 - 668 6.4e-09 35.9 27.0 2 5 3.5 3.5e+03 -1.4 0.3 2 11 534 543 533 553 0.68 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZBTB20-211 - 668 6.4e-09 35.9 27.0 3 5 3.1e-06 0.0031 17.8 1.1 1 21 561 581 561 581 0.96 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZBTB20-211 - 668 6.4e-09 35.9 27.0 4 5 0.00011 0.11 12.9 0.8 1 20 589 608 589 609 0.93 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZBTB20-211 - 668 6.4e-09 35.9 27.0 5 5 0.024 24 5.5 0.1 1 21 642 662 642 662 0.94 Zinc-finger of C2H2 type # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB20-211.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB20-211.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB20-211.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB20-211.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB20-211.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:57:24 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- BTB PF00651.31 111 ZBTB20-212 - 741 7.1e-24 84.2 0.1 1 2 1.7e-26 1.9e-23 82.8 0.0 1 110 94 196 94 197 0.93 BTB/POZ domain BTB PF00651.31 111 ZBTB20-212 - 741 7.1e-24 84.2 0.1 2 2 6.1 6.9e+03 -2.7 0.0 35 54 592 610 588 619 0.76 BTB/POZ domain zf-C2H2 PF00096.26 23 ZBTB20-212 - 741 1.8e-22 78.5 39.8 1 5 2.8e-07 0.00031 21.0 1.6 1 23 578 600 578 600 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZBTB20-212 - 741 1.8e-22 78.5 39.8 2 5 2e-06 0.0022 18.3 1.8 1 23 606 628 606 628 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZBTB20-212 - 741 1.8e-22 78.5 39.8 3 5 9.2e-10 1e-06 28.8 1.9 1 23 634 656 634 656 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZBTB20-212 - 741 1.8e-22 78.5 39.8 4 5 1.8e-06 0.002 18.5 2.4 1 23 662 684 662 684 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZBTB20-212 - 741 1.8e-22 78.5 39.8 5 5 9.8e-06 0.011 16.1 0.2 1 23 715 737 715 737 0.99 Zinc finger, C2H2 type zf-H2C2_2 PF13465.6 26 ZBTB20-212 - 741 8.7e-21 73.4 40.1 1 6 6.1e-06 0.0068 16.8 0.3 12 25 575 588 566 589 0.85 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZBTB20-212 - 741 8.7e-21 73.4 40.1 2 6 2.1e-08 2.4e-05 24.6 0.9 1 24 592 615 592 616 0.89 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZBTB20-212 - 741 8.7e-21 73.4 40.1 3 6 1.6e-08 1.8e-05 25.0 0.2 2 25 621 644 620 645 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZBTB20-212 - 741 8.7e-21 73.4 40.1 4 6 1.7e-09 2e-06 28.0 2.7 1 26 648 673 648 673 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZBTB20-212 - 741 8.7e-21 73.4 40.1 5 6 0.15 1.6e+02 2.9 1.9 14 25 714 725 677 726 0.79 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZBTB20-212 - 741 8.7e-21 73.4 40.1 6 6 2.3 2.6e+03 -0.9 0.2 2 9 730 737 729 739 0.86 Zinc-finger double domain zf-C2H2_4 PF13894.6 24 ZBTB20-212 - 741 2.9e-16 58.8 33.3 1 5 1.4e-05 0.016 16.0 1.1 1 23 578 600 578 601 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZBTB20-212 - 741 2.9e-16 58.8 33.3 2 5 0.00043 0.49 11.4 1.7 1 23 606 628 606 629 0.90 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZBTB20-212 - 741 2.9e-16 58.8 33.3 3 5 1.9e-07 0.00021 21.8 1.5 1 23 634 656 634 657 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZBTB20-212 - 741 2.9e-16 58.8 33.3 4 5 0.00013 0.15 13.0 2.4 1 23 662 684 662 685 0.87 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZBTB20-212 - 741 2.9e-16 58.8 33.3 5 5 1.9e-05 0.022 15.6 0.2 1 23 715 737 715 738 0.96 C2H2-type zinc finger zf-met PF12874.7 25 ZBTB20-212 - 741 1.1e-08 35.2 27.0 1 5 1.2e-05 0.013 15.8 1.5 1 20 578 597 578 598 0.95 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZBTB20-212 - 741 1.1e-08 35.2 27.0 2 5 3.5 3.9e+03 -1.5 0.3 2 11 607 616 606 626 0.68 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZBTB20-212 - 741 1.1e-08 35.2 27.0 3 5 3.1e-06 0.0035 17.7 1.1 1 21 634 654 634 654 0.96 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZBTB20-212 - 741 1.1e-08 35.2 27.0 4 5 0.00011 0.12 12.8 0.8 1 20 662 681 662 682 0.93 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZBTB20-212 - 741 1.1e-08 35.2 27.0 5 5 0.024 27 5.3 0.1 1 21 715 735 715 735 0.94 Zinc-finger of C2H2 type # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB20-212.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB20-212.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB20-212.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB20-212.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB20-212.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:57:24 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB20-213.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB20-213.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB20-213.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB20-213.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB20-213.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:57:25 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB20-214.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB20-214.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB20-214.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB20-214.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB20-214.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:57:25 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- BTB PF00651.31 111 ZBTB20-215 - 668 5.9e-24 84.4 0.1 1 2 1.6e-26 1.6e-23 83.0 0.0 1 110 21 123 21 124 0.93 BTB/POZ domain BTB PF00651.31 111 ZBTB20-215 - 668 5.9e-24 84.4 0.1 2 2 6.1 6.1e+03 -2.5 0.0 35 54 519 537 515 546 0.76 BTB/POZ domain zf-C2H2 PF00096.26 23 ZBTB20-215 - 668 5.3e-23 80.1 38.9 1 5 2.8e-07 0.00028 21.2 1.6 1 23 505 527 505 527 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZBTB20-215 - 668 5.3e-23 80.1 38.9 2 5 2e-06 0.002 18.5 1.8 1 23 533 555 533 555 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZBTB20-215 - 668 5.3e-23 80.1 38.9 3 5 9.2e-10 9.1e-07 29.0 1.9 1 23 561 583 561 583 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZBTB20-215 - 668 5.3e-23 80.1 38.9 4 5 1.8e-06 0.0018 18.6 2.4 1 23 589 611 589 611 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZBTB20-215 - 668 5.3e-23 80.1 38.9 5 5 9.8e-06 0.0097 16.3 0.2 1 23 642 664 642 664 0.99 Zinc finger, C2H2 type zf-H2C2_2 PF13465.6 26 ZBTB20-215 - 668 2.3e-21 75.2 39.3 1 6 6.1e-06 0.0061 16.9 0.3 12 25 502 515 493 516 0.85 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZBTB20-215 - 668 2.3e-21 75.2 39.3 2 6 2.1e-08 2.1e-05 24.7 0.9 1 24 519 542 519 543 0.89 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZBTB20-215 - 668 2.3e-21 75.2 39.3 3 6 1.6e-08 1.6e-05 25.1 0.2 2 25 548 571 547 572 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZBTB20-215 - 668 2.3e-21 75.2 39.3 4 6 1.7e-09 1.7e-06 28.2 2.7 1 26 575 600 575 600 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZBTB20-215 - 668 2.3e-21 75.2 39.3 5 6 0.15 1.5e+02 3.1 1.9 14 25 641 652 604 653 0.79 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZBTB20-215 - 668 2.3e-21 75.2 39.3 6 6 2 2e+03 -0.5 0.1 2 9 657 664 656 667 0.85 Zinc-finger double domain zf-C2H2_4 PF13894.6 24 ZBTB20-215 - 668 1.6e-16 59.6 33.3 1 5 1.4e-05 0.014 16.2 1.1 1 23 505 527 505 528 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZBTB20-215 - 668 1.6e-16 59.6 33.3 2 5 0.00043 0.43 11.5 1.7 1 23 533 555 533 556 0.90 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZBTB20-215 - 668 1.6e-16 59.6 33.3 3 5 1.9e-07 0.00019 22.0 1.5 1 23 561 583 561 584 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZBTB20-215 - 668 1.6e-16 59.6 33.3 4 5 0.00013 0.13 13.2 2.4 1 23 589 611 589 612 0.87 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZBTB20-215 - 668 1.6e-16 59.6 33.3 5 5 1.9e-05 0.019 15.7 0.2 1 23 642 664 642 665 0.96 C2H2-type zinc finger zf-met PF12874.7 25 ZBTB20-215 - 668 6.4e-09 35.9 27.0 1 5 1.2e-05 0.012 16.0 1.5 1 20 505 524 505 525 0.95 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZBTB20-215 - 668 6.4e-09 35.9 27.0 2 5 3.5 3.5e+03 -1.4 0.3 2 11 534 543 533 553 0.68 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZBTB20-215 - 668 6.4e-09 35.9 27.0 3 5 3.1e-06 0.0031 17.8 1.1 1 21 561 581 561 581 0.96 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZBTB20-215 - 668 6.4e-09 35.9 27.0 4 5 0.00011 0.11 12.9 0.8 1 20 589 608 589 609 0.93 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZBTB20-215 - 668 6.4e-09 35.9 27.0 5 5 0.024 24 5.5 0.1 1 21 642 662 642 662 0.94 Zinc-finger of C2H2 type # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB20-215.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB20-215.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB20-215.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB20-215.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB20-215.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:57:25 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB20-216.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB20-216.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB20-216.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB20-216.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB20-216.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:57:26 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB20-217.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB20-217.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB20-217.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB20-217.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB20-217.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:57:26 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB20-218.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB20-218.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB20-218.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB20-218.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB20-218.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:57:26 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB20-219.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB20-219.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB20-219.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB20-219.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB20-219.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:57:27 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB20-220.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB20-220.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB20-220.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB20-220.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB20-220.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:57:27 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- BTB PF00651.31 111 ZBTB21-201 - 1066 2.2e-25 89.0 0.2 1 1 2.9e-28 4.4e-25 88.1 0.2 1 105 20 120 20 124 0.93 BTB/POZ domain zf_C2H2_6 PF18450.1 28 ZBTB21-201 - 1066 1.7e-18 66.0 4.0 1 3 0.088 1.3e+02 2.4 0.4 2 9 669 676 668 686 0.73 Zinc Finger domain zf_C2H2_6 PF18450.1 28 ZBTB21-201 - 1066 1.7e-18 66.0 4.0 2 3 0.2 3e+02 1.2 1.6 5 26 724 745 723 745 0.92 Zinc Finger domain zf_C2H2_6 PF18450.1 28 ZBTB21-201 - 1066 1.7e-18 66.0 4.0 3 3 1.1e-21 1.7e-18 66.0 4.0 1 28 746 773 746 773 0.99 Zinc Finger domain zf-C2H2 PF00096.26 23 ZBTB21-201 - 1066 1.4e-14 53.6 70.3 1 9 0.00035 0.53 10.9 4.8 1 23 546 569 546 569 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZBTB21-201 - 1066 1.4e-14 53.6 70.3 2 9 0.23 3.5e+02 2.0 6.5 1 23 575 598 575 598 0.87 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZBTB21-201 - 1066 1.4e-14 53.6 70.3 3 9 6e-07 0.0009 19.6 1.7 1 23 670 692 670 692 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZBTB21-201 - 1066 1.4e-14 53.6 70.3 4 9 1.7 2.5e+03 -0.7 0.0 1 9 722 730 722 736 0.82 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZBTB21-201 - 1066 1.4e-14 53.6 70.3 5 9 0.017 26 5.5 0.2 2 20 749 767 749 769 0.86 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZBTB21-201 - 1066 1.4e-14 53.6 70.3 6 9 0.0087 13 6.5 0.4 2 23 776 798 775 798 0.91 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZBTB21-201 - 1066 1.4e-14 53.6 70.3 7 9 1.2e-05 0.018 15.5 0.3 2 20 910 928 909 930 0.93 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZBTB21-201 - 1066 1.4e-14 53.6 70.3 8 9 2.5e-05 0.037 14.5 3.1 1 23 937 959 937 959 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZBTB21-201 - 1066 1.4e-14 53.6 70.3 9 9 8.2e-06 0.012 16.0 3.5 1 23 1043 1065 1043 1065 0.97 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZBTB21-201 - 1066 8.3e-13 48.0 76.9 1 9 0.00012 0.18 12.7 4.1 1 24 546 569 546 569 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZBTB21-201 - 1066 8.3e-13 48.0 76.9 2 9 0.0032 4.7 8.3 6.8 1 24 575 598 575 598 0.97 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZBTB21-201 - 1066 8.3e-13 48.0 76.9 3 9 9.1e-06 0.014 16.2 0.9 1 23 670 692 670 693 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZBTB21-201 - 1066 8.3e-13 48.0 76.9 4 9 0.14 2e+02 3.2 0.4 1 19 722 740 722 744 0.78 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZBTB21-201 - 1066 8.3e-13 48.0 76.9 5 9 0.022 32 5.7 1.4 3 20 750 767 749 770 0.80 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZBTB21-201 - 1066 8.3e-13 48.0 76.9 6 9 0.0053 7.9 7.6 0.7 2 24 776 798 775 798 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZBTB21-201 - 1066 8.3e-13 48.0 76.9 7 9 0.00039 0.59 11.1 0.4 2 20 910 928 909 930 0.91 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZBTB21-201 - 1066 8.3e-13 48.0 76.9 8 9 0.00012 0.17 12.8 2.9 1 23 937 959 937 960 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZBTB21-201 - 1066 8.3e-13 48.0 76.9 9 9 8.2e-05 0.12 13.2 3.2 1 23 1043 1065 1043 1066 0.96 C2H2-type zinc finger # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB21-201.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB21-201.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB21-201.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB21-201.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB21-201.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:57:27 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB21-202.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB21-202.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB21-202.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB21-202.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB21-202.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:57:28 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- BTB PF00651.31 111 ZBTB21-203 - 1066 2.2e-25 89.0 0.2 1 1 2.9e-28 4.4e-25 88.1 0.2 1 105 20 120 20 124 0.93 BTB/POZ domain zf_C2H2_6 PF18450.1 28 ZBTB21-203 - 1066 1.7e-18 66.0 4.0 1 3 0.088 1.3e+02 2.4 0.4 2 9 669 676 668 686 0.73 Zinc Finger domain zf_C2H2_6 PF18450.1 28 ZBTB21-203 - 1066 1.7e-18 66.0 4.0 2 3 0.2 3e+02 1.2 1.6 5 26 724 745 723 745 0.92 Zinc Finger domain zf_C2H2_6 PF18450.1 28 ZBTB21-203 - 1066 1.7e-18 66.0 4.0 3 3 1.1e-21 1.7e-18 66.0 4.0 1 28 746 773 746 773 0.99 Zinc Finger domain zf-C2H2 PF00096.26 23 ZBTB21-203 - 1066 1.4e-14 53.6 70.3 1 9 0.00035 0.53 10.9 4.8 1 23 546 569 546 569 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZBTB21-203 - 1066 1.4e-14 53.6 70.3 2 9 0.23 3.5e+02 2.0 6.5 1 23 575 598 575 598 0.87 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZBTB21-203 - 1066 1.4e-14 53.6 70.3 3 9 6e-07 0.0009 19.6 1.7 1 23 670 692 670 692 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZBTB21-203 - 1066 1.4e-14 53.6 70.3 4 9 1.7 2.5e+03 -0.7 0.0 1 9 722 730 722 736 0.82 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZBTB21-203 - 1066 1.4e-14 53.6 70.3 5 9 0.017 26 5.5 0.2 2 20 749 767 749 769 0.86 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZBTB21-203 - 1066 1.4e-14 53.6 70.3 6 9 0.0087 13 6.5 0.4 2 23 776 798 775 798 0.91 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZBTB21-203 - 1066 1.4e-14 53.6 70.3 7 9 1.2e-05 0.018 15.5 0.3 2 20 910 928 909 930 0.93 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZBTB21-203 - 1066 1.4e-14 53.6 70.3 8 9 2.5e-05 0.037 14.5 3.1 1 23 937 959 937 959 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZBTB21-203 - 1066 1.4e-14 53.6 70.3 9 9 8.2e-06 0.012 16.0 3.5 1 23 1043 1065 1043 1065 0.97 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZBTB21-203 - 1066 8.3e-13 48.0 76.9 1 9 0.00012 0.18 12.7 4.1 1 24 546 569 546 569 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZBTB21-203 - 1066 8.3e-13 48.0 76.9 2 9 0.0032 4.7 8.3 6.8 1 24 575 598 575 598 0.97 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZBTB21-203 - 1066 8.3e-13 48.0 76.9 3 9 9.1e-06 0.014 16.2 0.9 1 23 670 692 670 693 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZBTB21-203 - 1066 8.3e-13 48.0 76.9 4 9 0.14 2e+02 3.2 0.4 1 19 722 740 722 744 0.78 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZBTB21-203 - 1066 8.3e-13 48.0 76.9 5 9 0.022 32 5.7 1.4 3 20 750 767 749 770 0.80 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZBTB21-203 - 1066 8.3e-13 48.0 76.9 6 9 0.0053 7.9 7.6 0.7 2 24 776 798 775 798 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZBTB21-203 - 1066 8.3e-13 48.0 76.9 7 9 0.00039 0.59 11.1 0.4 2 20 910 928 909 930 0.91 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZBTB21-203 - 1066 8.3e-13 48.0 76.9 8 9 0.00012 0.17 12.8 2.9 1 23 937 959 937 960 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZBTB21-203 - 1066 8.3e-13 48.0 76.9 9 9 8.2e-05 0.12 13.2 3.2 1 23 1043 1065 1043 1066 0.96 C2H2-type zinc finger # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB21-203.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB21-203.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB21-203.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB21-203.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB21-203.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:57:28 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- BTB PF00651.31 111 ZBTB21-204 - 865 1.7e-25 89.4 0.2 1 1 2.6e-28 3.3e-25 88.5 0.2 1 105 20 120 20 124 0.93 BTB/POZ domain zf_C2H2_6 PF18450.1 28 ZBTB21-204 - 865 4.9e-19 67.7 4.0 1 1 1e-21 1.3e-18 66.3 4.0 1 28 545 572 545 572 0.99 Zinc Finger domain zf-C2H2 PF00096.26 23 ZBTB21-204 - 865 4.8e-11 42.5 31.7 1 5 0.016 20 5.9 0.2 2 20 548 566 548 568 0.86 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZBTB21-204 - 865 4.8e-11 42.5 31.7 2 5 0.008 10 6.8 0.4 2 23 575 597 574 597 0.91 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZBTB21-204 - 865 4.8e-11 42.5 31.7 3 5 1.1e-05 0.014 15.8 0.3 2 20 709 727 708 729 0.93 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZBTB21-204 - 865 4.8e-11 42.5 31.7 4 5 2.3e-05 0.029 14.8 3.1 1 23 736 758 736 758 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZBTB21-204 - 865 4.8e-11 42.5 31.7 5 5 7.6e-06 0.0097 16.3 3.5 1 23 842 864 842 864 0.97 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZBTB21-204 - 865 1.1e-07 32.1 36.0 1 5 0.02 25 6.0 1.4 3 20 549 566 548 569 0.80 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZBTB21-204 - 865 1.1e-07 32.1 36.0 2 5 0.0049 6.2 7.9 0.7 2 24 575 597 574 597 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZBTB21-204 - 865 1.1e-07 32.1 36.0 3 5 0.00036 0.46 11.4 0.4 2 20 709 727 708 729 0.91 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZBTB21-204 - 865 1.1e-07 32.1 36.0 4 5 0.00011 0.14 13.1 2.9 1 23 736 758 736 759 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZBTB21-204 - 865 1.1e-07 32.1 36.0 5 5 7.6e-05 0.097 13.6 3.2 1 23 842 864 842 865 0.96 C2H2-type zinc finger # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB21-204.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB21-204.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB21-204.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB21-204.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB21-204.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:57:29 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- BTB PF00651.31 111 ZBTB21-205 - 1066 2.2e-25 89.0 0.2 1 1 2.9e-28 4.4e-25 88.1 0.2 1 105 20 120 20 124 0.93 BTB/POZ domain zf_C2H2_6 PF18450.1 28 ZBTB21-205 - 1066 1.7e-18 66.0 4.0 1 3 0.088 1.3e+02 2.4 0.4 2 9 669 676 668 686 0.73 Zinc Finger domain zf_C2H2_6 PF18450.1 28 ZBTB21-205 - 1066 1.7e-18 66.0 4.0 2 3 0.2 3e+02 1.2 1.6 5 26 724 745 723 745 0.92 Zinc Finger domain zf_C2H2_6 PF18450.1 28 ZBTB21-205 - 1066 1.7e-18 66.0 4.0 3 3 1.1e-21 1.7e-18 66.0 4.0 1 28 746 773 746 773 0.99 Zinc Finger domain zf-C2H2 PF00096.26 23 ZBTB21-205 - 1066 1.4e-14 53.6 70.3 1 9 0.00035 0.53 10.9 4.8 1 23 546 569 546 569 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZBTB21-205 - 1066 1.4e-14 53.6 70.3 2 9 0.23 3.5e+02 2.0 6.5 1 23 575 598 575 598 0.87 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZBTB21-205 - 1066 1.4e-14 53.6 70.3 3 9 6e-07 0.0009 19.6 1.7 1 23 670 692 670 692 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZBTB21-205 - 1066 1.4e-14 53.6 70.3 4 9 1.7 2.5e+03 -0.7 0.0 1 9 722 730 722 736 0.82 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZBTB21-205 - 1066 1.4e-14 53.6 70.3 5 9 0.017 26 5.5 0.2 2 20 749 767 749 769 0.86 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZBTB21-205 - 1066 1.4e-14 53.6 70.3 6 9 0.0087 13 6.5 0.4 2 23 776 798 775 798 0.91 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZBTB21-205 - 1066 1.4e-14 53.6 70.3 7 9 1.2e-05 0.018 15.5 0.3 2 20 910 928 909 930 0.93 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZBTB21-205 - 1066 1.4e-14 53.6 70.3 8 9 2.5e-05 0.037 14.5 3.1 1 23 937 959 937 959 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZBTB21-205 - 1066 1.4e-14 53.6 70.3 9 9 8.2e-06 0.012 16.0 3.5 1 23 1043 1065 1043 1065 0.97 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZBTB21-205 - 1066 8.3e-13 48.0 76.9 1 9 0.00012 0.18 12.7 4.1 1 24 546 569 546 569 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZBTB21-205 - 1066 8.3e-13 48.0 76.9 2 9 0.0032 4.7 8.3 6.8 1 24 575 598 575 598 0.97 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZBTB21-205 - 1066 8.3e-13 48.0 76.9 3 9 9.1e-06 0.014 16.2 0.9 1 23 670 692 670 693 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZBTB21-205 - 1066 8.3e-13 48.0 76.9 4 9 0.14 2e+02 3.2 0.4 1 19 722 740 722 744 0.78 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZBTB21-205 - 1066 8.3e-13 48.0 76.9 5 9 0.022 32 5.7 1.4 3 20 750 767 749 770 0.80 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZBTB21-205 - 1066 8.3e-13 48.0 76.9 6 9 0.0053 7.9 7.6 0.7 2 24 776 798 775 798 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZBTB21-205 - 1066 8.3e-13 48.0 76.9 7 9 0.00039 0.59 11.1 0.4 2 20 910 928 909 930 0.91 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZBTB21-205 - 1066 8.3e-13 48.0 76.9 8 9 0.00012 0.17 12.8 2.9 1 23 937 959 937 960 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZBTB21-205 - 1066 8.3e-13 48.0 76.9 9 9 8.2e-05 0.12 13.2 3.2 1 23 1043 1065 1043 1066 0.96 C2H2-type zinc finger # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB21-205.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB21-205.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB21-205.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB21-205.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB21-205.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:57:29 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB21-206.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB21-206.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB21-206.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB21-206.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB21-206.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:57:29 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB21-207.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB21-207.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB21-207.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB21-207.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB21-207.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:57:30 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB21-208.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB21-208.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB21-208.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB21-208.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB21-208.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:57:30 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- BTB PF00651.31 111 ZBTB2-201 - 514 3.8e-19 69.0 0.1 1 1 7e-22 7.4e-19 68.0 0.1 1 98 14 106 14 116 0.83 BTB/POZ domain zf-C2H2 PF00096.26 23 ZBTB2-201 - 514 2.4e-14 52.9 30.5 1 4 1.1e-06 0.0012 19.2 1.7 1 23 254 276 254 276 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZBTB2-201 - 514 2.4e-14 52.9 30.5 2 4 1.9e-07 0.0002 21.6 1.5 1 23 363 385 363 385 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZBTB2-201 - 514 2.4e-14 52.9 30.5 3 4 0.00013 0.14 12.7 3.2 1 20 390 409 390 411 0.93 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZBTB2-201 - 514 2.4e-14 52.9 30.5 4 4 1.3e-05 0.014 15.8 1.9 1 19 448 466 448 468 0.96 Zinc finger, C2H2 type zf-H2C2_2 PF13465.6 26 ZBTB2-201 - 514 7.5e-12 45.1 20.2 1 5 0.013 13 6.4 0.2 13 25 250 264 243 264 0.80 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZBTB2-201 - 514 7.5e-12 45.1 20.2 2 5 0.078 83 3.9 0.0 1 12 268 279 268 285 0.87 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZBTB2-201 - 514 7.5e-12 45.1 20.2 3 5 0.01 11 6.7 0.1 13 24 361 372 355 374 0.80 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZBTB2-201 - 514 7.5e-12 45.1 20.2 4 5 1.2e-07 0.00013 22.2 2.9 3 24 379 399 377 399 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZBTB2-201 - 514 7.5e-12 45.1 20.2 5 5 1.7e-05 0.018 15.5 0.3 13 26 446 459 440 459 0.89 Zinc-finger double domain zf-C2H2_4 PF13894.6 24 ZBTB2-201 - 514 2.7e-09 37.1 27.3 1 4 1.6e-05 0.017 15.9 1.3 1 23 254 276 254 277 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZBTB2-201 - 514 2.7e-09 37.1 27.3 2 4 9e-06 0.0095 16.7 1.2 1 23 363 385 363 386 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZBTB2-201 - 514 2.7e-09 37.1 27.3 3 4 0.011 12 7.1 1.2 1 19 390 408 390 409 0.86 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZBTB2-201 - 514 2.7e-09 37.1 27.3 4 4 4.4e-05 0.047 14.5 0.3 1 19 448 466 448 467 0.95 C2H2-type zinc finger zf-met PF12874.7 25 ZBTB2-201 - 514 1.2e-08 35.1 21.1 1 4 0.00048 0.51 10.8 0.3 2 22 254 275 253 277 0.89 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZBTB2-201 - 514 1.2e-08 35.1 21.1 2 4 0.00023 0.24 11.8 0.9 1 21 363 383 363 386 0.92 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZBTB2-201 - 514 1.2e-08 35.1 21.1 3 4 0.00015 0.16 12.4 1.5 1 19 390 408 390 409 0.95 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZBTB2-201 - 514 1.2e-08 35.1 21.1 4 4 0.0002 0.21 12.0 0.4 1 16 448 463 448 466 0.84 Zinc-finger of C2H2 type zf-C2H2_jaz PF12171.8 27 ZBTB2-201 - 514 8.7e-07 29.1 15.7 1 4 0.1 1.1e+02 3.3 0.1 2 21 254 273 253 274 0.88 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZBTB2-201 - 514 8.7e-07 29.1 15.7 2 4 0.0011 1.2 9.5 1.1 1 21 362 382 362 383 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZBTB2-201 - 514 8.7e-07 29.1 15.7 3 4 0.0021 2.2 8.7 0.7 2 20 390 408 389 409 0.87 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZBTB2-201 - 514 8.7e-07 29.1 15.7 4 4 1.3e-05 0.014 15.7 0.1 2 20 448 466 447 466 0.94 Zinc-finger double-stranded RNA-binding # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB2-201.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB2-201.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB2-201.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB2-201.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB2-201.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:57:30 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZBTB24-201 - 697 1.4e-47 158.1 53.3 1 9 0.052 40 4.9 0.2 16 26 295 305 285 305 0.87 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZBTB24-201 - 697 1.4e-47 158.1 53.3 2 9 1.9e-09 1.5e-06 28.4 0.2 5 25 312 332 309 333 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZBTB24-201 - 697 1.4e-47 158.1 53.3 3 9 1.5e-09 1.1e-06 28.7 0.2 1 24 336 359 336 361 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZBTB24-201 - 697 1.4e-47 158.1 53.3 4 9 4.2e-08 3.3e-05 24.1 0.1 2 25 365 388 364 389 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZBTB24-201 - 697 1.4e-47 158.1 53.3 5 9 0.0012 0.95 10.0 4.6 2 24 393 415 392 415 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZBTB24-201 - 697 1.4e-47 158.1 53.3 6 9 7.3e-12 5.7e-09 36.0 0.9 2 25 421 444 420 445 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZBTB24-201 - 697 1.4e-47 158.1 53.3 7 9 2e-09 1.5e-06 28.3 0.1 1 25 448 472 448 473 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZBTB24-201 - 697 1.4e-47 158.1 53.3 8 9 3.2e-08 2.5e-05 24.5 2.0 3 25 478 500 476 501 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZBTB24-201 - 697 1.4e-47 158.1 53.3 9 9 0.075 59 4.4 0.8 1 13 504 516 504 518 0.93 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZBTB24-201 - 697 1.5e-39 132.2 62.9 1 8 5.1e-07 0.0004 20.7 2.4 2 23 295 316 295 316 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZBTB24-201 - 697 1.5e-39 132.2 62.9 2 8 5.5e-08 4.3e-05 23.7 1.8 1 23 322 344 322 344 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZBTB24-201 - 697 1.5e-39 132.2 62.9 3 8 4.6e-06 0.0036 17.7 1.9 1 23 350 372 350 372 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZBTB24-201 - 697 1.5e-39 132.2 62.9 4 8 2.7e-07 0.00021 21.5 2.4 1 23 378 400 378 400 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZBTB24-201 - 697 1.5e-39 132.2 62.9 5 8 2.9e-06 0.0022 18.3 3.9 2 23 407 428 407 428 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZBTB24-201 - 697 1.5e-39 132.2 62.9 6 8 5.2e-10 4.1e-07 30.1 0.4 1 23 434 456 434 456 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZBTB24-201 - 697 1.5e-39 132.2 62.9 7 8 1.3e-05 0.01 16.3 1.6 1 19 462 480 462 484 0.91 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZBTB24-201 - 697 1.5e-39 132.2 62.9 8 8 5.8e-07 0.00045 20.5 0.1 1 23 490 512 490 512 0.98 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZBTB24-201 - 697 2.8e-27 93.0 58.3 1 8 0.0006 0.47 11.4 1.3 2 23 295 316 294 317 0.87 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZBTB24-201 - 697 2.8e-27 93.0 58.3 2 8 2.1e-05 0.017 16.0 1.5 1 23 322 344 322 345 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZBTB24-201 - 697 2.8e-27 93.0 58.3 3 8 5.1e-05 0.04 14.8 1.8 1 23 350 372 350 373 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZBTB24-201 - 697 2.8e-27 93.0 58.3 4 8 9.6e-06 0.0075 17.0 1.6 1 23 378 400 378 401 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZBTB24-201 - 697 2.8e-27 93.0 58.3 5 8 1.3e-05 0.0099 16.7 2.2 2 23 407 428 406 429 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZBTB24-201 - 697 2.8e-27 93.0 58.3 6 8 5.6e-07 0.00043 20.9 0.4 1 23 434 456 434 457 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZBTB24-201 - 697 2.8e-27 93.0 58.3 7 8 2.4e-05 0.019 15.8 1.5 1 23 462 484 462 485 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZBTB24-201 - 697 2.8e-27 93.0 58.3 8 8 1.5e-05 0.012 16.4 0.2 1 23 490 512 490 513 0.96 C2H2-type zinc finger BTB PF00651.31 111 ZBTB24-201 - 697 3e-27 95.0 0.5 1 1 8.3e-30 6.4e-27 94.0 0.5 1 109 27 131 27 133 0.95 BTB/POZ domain zf-C2H2_jaz PF12171.8 27 ZBTB24-201 - 697 5e-14 52.2 33.1 1 8 0.42 3.3e+02 1.7 1.8 4 24 296 316 295 316 0.89 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZBTB24-201 - 697 5e-14 52.2 33.1 2 8 0.0097 7.6 7.0 0.1 2 21 322 341 321 342 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZBTB24-201 - 697 5e-14 52.2 33.1 3 8 0.012 9 6.7 0.0 2 22 350 370 349 370 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZBTB24-201 - 697 5e-14 52.2 33.1 4 8 0.00028 0.22 11.9 1.2 2 22 378 398 377 398 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZBTB24-201 - 697 5e-14 52.2 33.1 5 8 0.0012 0.9 9.9 0.9 3 24 407 428 406 428 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZBTB24-201 - 697 5e-14 52.2 33.1 6 8 0.00021 0.17 12.2 0.0 2 22 434 454 433 454 0.95 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZBTB24-201 - 697 5e-14 52.2 33.1 7 8 0.0016 1.2 9.5 0.1 2 21 462 481 461 482 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZBTB24-201 - 697 5e-14 52.2 33.1 8 8 0.00075 0.59 10.5 0.0 2 22 490 510 489 510 0.95 Zinc-finger double-stranded RNA-binding zf-met PF12874.7 25 ZBTB24-201 - 697 4.9e-10 39.5 46.5 1 8 0.35 2.7e+02 2.1 1.0 3 23 296 316 295 317 0.90 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZBTB24-201 - 697 4.9e-10 39.5 46.5 2 8 0.73 5.7e+02 1.1 0.3 1 20 322 341 322 342 0.89 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZBTB24-201 - 697 4.9e-10 39.5 46.5 3 8 0.011 8.9 6.9 1.0 1 20 350 369 350 370 0.94 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZBTB24-201 - 697 4.9e-10 39.5 46.5 4 8 0.015 12 6.5 1.4 1 21 378 398 378 401 0.93 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZBTB24-201 - 697 4.9e-10 39.5 46.5 5 8 0.00017 0.13 12.7 0.5 2 22 407 427 406 429 0.92 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZBTB24-201 - 697 4.9e-10 39.5 46.5 6 8 9.3e-07 0.00072 19.9 0.3 1 23 434 456 434 457 0.92 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZBTB24-201 - 697 4.9e-10 39.5 46.5 7 8 0.0018 1.4 9.4 0.5 1 19 462 480 462 481 0.92 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZBTB24-201 - 697 4.9e-10 39.5 46.5 8 8 0.001 0.81 10.2 0.1 1 21 490 510 490 512 0.94 Zinc-finger of C2H2 type # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB24-201.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB24-201.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB24-201.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB24-201.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB24-201.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:57:31 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- BTB PF00651.31 111 ZBTB26-201 - 441 2e-18 66.6 0.1 1 1 6.1e-21 5.8e-18 65.2 0.1 1 107 23 123 23 126 0.89 BTB/POZ domain zf-C2H2 PF00096.26 23 ZBTB26-201 - 441 3.2e-18 65.1 36.7 1 4 2e-06 0.0019 18.5 4.4 1 23 273 295 273 295 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZBTB26-201 - 441 3.2e-18 65.1 36.7 2 4 1.2e-08 1.2e-05 25.5 2.6 1 23 298 320 298 320 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZBTB26-201 - 441 3.2e-18 65.1 36.7 3 4 8e-08 7.6e-05 23.0 2.7 1 23 326 348 326 348 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZBTB26-201 - 441 3.2e-18 65.1 36.7 4 4 1.2e-05 0.011 16.1 3.6 1 23 354 377 354 377 0.96 Zinc finger, C2H2 type zf-H2C2_2 PF13465.6 26 ZBTB26-201 - 441 4e-15 55.5 23.1 1 5 0.007 6.6 7.4 0.1 15 26 273 284 264 284 0.88 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZBTB26-201 - 441 4e-15 55.5 23.1 2 5 0.0044 4.2 8.0 0.6 3 25 289 308 287 309 0.79 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZBTB26-201 - 441 4e-15 55.5 23.1 3 5 3.9e-10 3.7e-07 30.3 0.7 1 25 312 336 312 337 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZBTB26-201 - 441 4e-15 55.5 23.1 4 5 6.7e-08 6.3e-05 23.2 0.8 1 26 340 365 340 365 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZBTB26-201 - 441 4e-15 55.5 23.1 5 5 2 1.9e+03 -0.4 0.3 2 9 369 377 369 382 0.70 Zinc-finger double domain zf-C2H2_4 PF13894.6 24 ZBTB26-201 - 441 4e-13 49.0 34.0 1 4 0.0002 0.18 12.7 3.8 1 23 273 295 273 296 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZBTB26-201 - 441 4e-13 49.0 34.0 2 4 7.9e-07 0.00075 20.1 1.3 1 23 298 320 298 321 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZBTB26-201 - 441 4e-13 49.0 34.0 3 4 1.8e-07 0.00017 22.2 2.7 1 23 326 348 326 349 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZBTB26-201 - 441 4e-13 49.0 34.0 4 4 0.00055 0.52 11.3 3.6 1 24 354 377 354 377 0.92 C2H2-type zinc finger # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB26-201.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB26-201.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB26-201.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB26-201.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB26-201.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:57:31 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- BTB PF00651.31 111 ZBTB26-202 - 441 2e-18 66.6 0.1 1 1 6.1e-21 5.8e-18 65.2 0.1 1 107 23 123 23 126 0.89 BTB/POZ domain zf-C2H2 PF00096.26 23 ZBTB26-202 - 441 3.2e-18 65.1 36.7 1 4 2e-06 0.0019 18.5 4.4 1 23 273 295 273 295 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZBTB26-202 - 441 3.2e-18 65.1 36.7 2 4 1.2e-08 1.2e-05 25.5 2.6 1 23 298 320 298 320 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZBTB26-202 - 441 3.2e-18 65.1 36.7 3 4 8e-08 7.6e-05 23.0 2.7 1 23 326 348 326 348 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZBTB26-202 - 441 3.2e-18 65.1 36.7 4 4 1.2e-05 0.011 16.1 3.6 1 23 354 377 354 377 0.96 Zinc finger, C2H2 type zf-H2C2_2 PF13465.6 26 ZBTB26-202 - 441 4e-15 55.5 23.1 1 5 0.007 6.6 7.4 0.1 15 26 273 284 264 284 0.88 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZBTB26-202 - 441 4e-15 55.5 23.1 2 5 0.0044 4.2 8.0 0.6 3 25 289 308 287 309 0.79 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZBTB26-202 - 441 4e-15 55.5 23.1 3 5 3.9e-10 3.7e-07 30.3 0.7 1 25 312 336 312 337 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZBTB26-202 - 441 4e-15 55.5 23.1 4 5 6.7e-08 6.3e-05 23.2 0.8 1 26 340 365 340 365 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZBTB26-202 - 441 4e-15 55.5 23.1 5 5 2 1.9e+03 -0.4 0.3 2 9 369 377 369 382 0.70 Zinc-finger double domain zf-C2H2_4 PF13894.6 24 ZBTB26-202 - 441 4e-13 49.0 34.0 1 4 0.0002 0.18 12.7 3.8 1 23 273 295 273 296 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZBTB26-202 - 441 4e-13 49.0 34.0 2 4 7.9e-07 0.00075 20.1 1.3 1 23 298 320 298 321 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZBTB26-202 - 441 4e-13 49.0 34.0 3 4 1.8e-07 0.00017 22.2 2.7 1 23 326 348 326 349 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZBTB26-202 - 441 4e-13 49.0 34.0 4 4 0.00055 0.52 11.3 3.6 1 24 354 377 354 377 0.92 C2H2-type zinc finger # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB26-202.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB26-202.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB26-202.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB26-202.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB26-202.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:57:32 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- BTB PF00651.31 111 ZBTB3-201 - 574 5.8e-24 84.5 0.1 1 1 3.3e-27 8.4e-24 83.9 0.1 1 109 64 171 64 173 0.93 BTB/POZ domain zf-C2H2 PF00096.26 23 ZBTB3-201 - 574 8.4e-07 29.1 12.4 1 2 5.4e-05 0.14 12.7 4.1 2 23 473 494 473 494 0.95 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZBTB3-201 - 574 8.4e-07 29.1 12.4 2 2 1.2e-07 0.00032 21.0 1.2 1 23 500 523 500 523 0.98 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZBTB3-201 - 574 9.5e-07 29.2 9.6 1 2 4.6e-06 0.012 16.4 2.6 2 23 473 494 472 495 0.90 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZBTB3-201 - 574 9.5e-07 29.2 9.6 2 2 5.8e-06 0.015 16.1 0.7 1 24 500 523 500 523 0.95 C2H2-type zinc finger # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB3-201.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB3-201.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB3-201.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB3-201.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB3-201.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:57:32 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB3-202.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB3-202.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB3-202.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB3-202.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB3-202.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:57:32 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB3-203.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB3-203.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB3-203.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB3-203.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB3-203.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:57:33 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- BTB PF00651.31 111 ZBTB33-201 - 672 3.3e-20 72.4 0.0 1 1 4.1e-23 6.6e-20 71.4 0.0 1 100 22 114 22 119 0.91 BTB/POZ domain # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB33-201.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB33-201.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB33-201.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB33-201.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB33-201.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:57:33 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- BTB PF00651.31 111 ZBTB33-202 - 672 3.3e-20 72.4 0.0 1 1 4.1e-23 6.6e-20 71.4 0.0 1 100 22 114 22 119 0.91 BTB/POZ domain # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB33-202.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB33-202.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB33-202.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB33-202.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB33-202.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:57:33 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- BTB PF00651.31 111 ZBTB37-201 - 503 9.6e-27 93.4 0.3 1 1 2.2e-29 1.6e-26 92.7 0.3 1 108 22 123 22 126 0.92 BTB/POZ domain zf-H2C2_2 PF13465.6 26 ZBTB37-201 - 503 2e-16 59.6 16.8 1 4 0.0062 4.4 7.9 0.2 14 25 371 383 365 384 0.85 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZBTB37-201 - 503 2e-16 59.6 16.8 2 4 1.4e-08 9.8e-06 25.8 0.3 1 26 387 412 387 412 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZBTB37-201 - 503 2e-16 59.6 16.8 3 4 5.9e-10 4.2e-07 30.1 4.1 2 24 416 438 415 439 0.97 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZBTB37-201 - 503 2e-16 59.6 16.8 4 4 0.42 3e+02 2.1 0.0 2 11 444 454 444 457 0.90 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZBTB37-201 - 503 3.2e-12 46.2 20.7 1 3 6.3e-06 0.0045 17.4 0.7 2 23 374 395 373 395 0.93 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZBTB37-201 - 503 3.2e-12 46.2 20.7 2 3 2.9e-08 2.1e-05 24.7 1.9 1 23 401 423 401 423 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZBTB37-201 - 503 3.2e-12 46.2 20.7 3 3 7.5e-05 0.054 14.0 3.9 1 23 429 452 429 452 0.96 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZBTB37-201 - 503 2.5e-09 37.2 18.3 1 3 6.4e-06 0.0046 17.7 0.4 2 23 374 395 373 396 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZBTB37-201 - 503 2.5e-09 37.2 18.3 2 3 5.9e-06 0.0042 17.8 1.1 1 23 401 423 401 424 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZBTB37-201 - 503 2.5e-09 37.2 18.3 3 3 0.0016 1.2 10.2 3.7 1 24 429 452 429 452 0.92 C2H2-type zinc finger # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB37-201.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB37-201.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB37-201.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB37-201.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB37-201.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:57:34 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- BTB PF00651.31 111 ZBTB37-202 - 361 6e-27 94.1 0.3 1 1 1.5e-30 8.7e-27 93.6 0.3 1 108 22 123 22 126 0.92 BTB/POZ domain # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB37-202.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB37-202.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB37-202.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB37-202.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB37-202.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:57:34 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- BTB PF00651.31 111 ZBTB37-203 - 308 4.4e-27 94.5 0.3 1 1 1.1e-30 6.3e-27 94.0 0.3 1 108 22 123 22 126 0.92 BTB/POZ domain # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB37-203.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB37-203.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB37-203.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB37-203.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB37-203.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:57:34 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- BTB PF00651.31 111 ZBTB37-204 - 503 9.6e-27 93.4 0.3 1 1 2.2e-29 1.6e-26 92.7 0.3 1 108 22 123 22 126 0.92 BTB/POZ domain zf-H2C2_2 PF13465.6 26 ZBTB37-204 - 503 2e-16 59.6 16.8 1 4 0.0062 4.4 7.9 0.2 14 25 371 383 365 384 0.85 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZBTB37-204 - 503 2e-16 59.6 16.8 2 4 1.4e-08 9.8e-06 25.8 0.3 1 26 387 412 387 412 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZBTB37-204 - 503 2e-16 59.6 16.8 3 4 5.9e-10 4.2e-07 30.1 4.1 2 24 416 438 415 439 0.97 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZBTB37-204 - 503 2e-16 59.6 16.8 4 4 0.42 3e+02 2.1 0.0 2 11 444 454 444 457 0.90 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZBTB37-204 - 503 3.2e-12 46.2 20.7 1 3 6.3e-06 0.0045 17.4 0.7 2 23 374 395 373 395 0.93 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZBTB37-204 - 503 3.2e-12 46.2 20.7 2 3 2.9e-08 2.1e-05 24.7 1.9 1 23 401 423 401 423 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZBTB37-204 - 503 3.2e-12 46.2 20.7 3 3 7.5e-05 0.054 14.0 3.9 1 23 429 452 429 452 0.96 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZBTB37-204 - 503 2.5e-09 37.2 18.3 1 3 6.4e-06 0.0046 17.7 0.4 2 23 374 395 373 396 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZBTB37-204 - 503 2.5e-09 37.2 18.3 2 3 5.9e-06 0.0042 17.8 1.1 1 23 401 423 401 424 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZBTB37-204 - 503 2.5e-09 37.2 18.3 3 3 0.0016 1.2 10.2 3.7 1 24 429 452 429 452 0.92 C2H2-type zinc finger # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB37-204.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB37-204.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB37-204.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB37-204.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB37-204.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:57:35 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZBTB38-201 - 1192 1.4e-25 88.5 90.2 1 12 0.62 8.5e+02 0.7 1.3 15 25 339 349 334 350 0.85 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZBTB38-201 - 1192 1.4e-25 88.5 90.2 2 12 7.5e-06 0.01 16.2 0.7 2 26 354 379 354 379 0.89 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZBTB38-201 - 1192 1.4e-25 88.5 90.2 3 12 0.13 1.8e+02 2.8 0.0 5 26 446 468 444 468 0.77 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZBTB38-201 - 1192 1.4e-25 88.5 90.2 4 12 0.0003 0.42 11.1 1.4 1 25 471 495 471 495 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZBTB38-201 - 1192 1.4e-25 88.5 90.2 5 12 7.4e-08 0.0001 22.6 0.5 3 24 501 522 499 523 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZBTB38-201 - 1192 1.4e-25 88.5 90.2 6 12 5.7 7.9e+03 -2.4 0.7 7 18 938 950 937 951 0.76 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZBTB38-201 - 1192 1.4e-25 88.5 90.2 7 12 0.16 2.3e+02 2.5 0.2 10 21 973 985 966 989 0.85 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZBTB38-201 - 1192 1.4e-25 88.5 90.2 8 12 0.0026 3.6 8.2 0.3 9 24 1001 1016 999 1018 0.86 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZBTB38-201 - 1192 1.4e-25 88.5 90.2 9 12 9.6e-09 1.3e-05 25.4 5.9 2 24 1022 1044 1021 1045 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZBTB38-201 - 1192 1.4e-25 88.5 90.2 10 12 2.9e-08 4e-05 23.9 0.4 1 25 1049 1073 1049 1073 0.97 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZBTB38-201 - 1192 1.4e-25 88.5 90.2 11 12 7.8e-07 0.0011 19.3 2.7 2 24 1078 1100 1077 1102 0.89 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZBTB38-201 - 1192 1.4e-25 88.5 90.2 12 12 0.00013 0.18 12.3 1.3 3 20 1111 1131 1111 1135 0.75 Zinc-finger double domain BTB PF00651.31 111 ZBTB38-201 - 1192 3.7e-22 78.6 0.1 1 1 5.3e-25 7.3e-22 77.7 0.1 1 106 20 123 20 128 0.89 BTB/POZ domain zf-C2H2 PF00096.26 23 ZBTB38-201 - 1192 1.4e-18 66.3 78.1 1 9 0.00026 0.35 11.4 2.0 1 23 339 361 339 361 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZBTB38-201 - 1192 1.4e-18 66.3 78.1 2 9 0.0003 0.41 11.2 0.3 2 20 369 387 368 389 0.91 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZBTB38-201 - 1192 1.4e-18 66.3 78.1 3 9 1.7e-06 0.0024 18.2 0.7 1 23 457 479 457 479 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZBTB38-201 - 1192 1.4e-18 66.3 78.1 4 9 0.00012 0.17 12.4 0.9 1 23 485 507 485 507 0.90 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZBTB38-201 - 1192 1.4e-18 66.3 78.1 5 9 0.64 8.8e+02 0.7 1.9 1 23 513 536 513 536 0.92 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZBTB38-201 - 1192 1.4e-18 66.3 78.1 6 9 0.00033 0.46 11.1 2.2 1 21 1007 1027 1007 1029 0.95 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZBTB38-201 - 1192 1.4e-18 66.3 78.1 7 9 3.4e-08 4.7e-05 23.6 2.1 1 23 1035 1057 1035 1057 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZBTB38-201 - 1192 1.4e-18 66.3 78.1 8 9 1.6e-06 0.0022 18.3 0.4 1 23 1063 1085 1063 1085 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZBTB38-201 - 1192 1.4e-18 66.3 78.1 9 9 0.00085 1.2 9.8 0.7 1 23 1122 1144 1122 1144 0.97 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZBTB38-201 - 1192 1.5e-16 59.6 82.9 1 11 6.8e-05 0.094 13.6 2.4 1 23 339 361 339 362 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZBTB38-201 - 1192 1.5e-16 59.6 82.9 2 11 6e-05 0.083 13.8 0.9 2 20 369 387 368 390 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZBTB38-201 - 1192 1.5e-16 59.6 82.9 3 11 4.5e-05 0.062 14.2 0.8 1 23 457 479 457 480 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZBTB38-201 - 1192 1.5e-16 59.6 82.9 4 11 0.0032 4.5 8.4 0.9 1 23 485 507 485 508 0.74 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZBTB38-201 - 1192 1.5e-16 59.6 82.9 5 11 0.0003 0.41 11.6 1.6 1 24 513 536 513 536 0.97 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZBTB38-201 - 1192 1.5e-16 59.6 82.9 6 11 8.7 1.2e+04 -2.3 0.1 2 7 980 985 979 987 0.80 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZBTB38-201 - 1192 1.5e-16 59.6 82.9 7 11 0.0005 0.69 10.9 2.1 1 21 1007 1027 1007 1029 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZBTB38-201 - 1192 1.5e-16 59.6 82.9 8 11 6.6e-05 0.091 13.6 1.7 1 23 1035 1057 1035 1058 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZBTB38-201 - 1192 1.5e-16 59.6 82.9 9 11 0.00015 0.2 12.6 0.4 1 23 1063 1085 1063 1086 0.91 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZBTB38-201 - 1192 1.5e-16 59.6 82.9 10 11 0.013 18 6.5 3.8 1 23 1091 1113 1091 1114 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZBTB38-201 - 1192 1.5e-16 59.6 82.9 11 11 0.014 19 6.4 0.8 1 23 1122 1144 1122 1145 0.95 C2H2-type zinc finger zf-C2H2_jaz PF12171.8 27 ZBTB38-201 - 1192 2.7e-07 30.7 50.8 1 9 0.042 57 4.2 0.7 2 21 339 358 338 359 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZBTB38-201 - 1192 2.7e-07 30.7 50.8 2 9 2.6e-05 0.036 14.4 0.2 4 21 370 387 367 388 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZBTB38-201 - 1192 2.7e-07 30.7 50.8 3 9 0.01 14 6.1 0.0 2 20 457 475 456 477 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZBTB38-201 - 1192 2.7e-07 30.7 50.8 4 9 0.073 1e+02 3.4 0.3 2 11 485 494 484 503 0.89 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZBTB38-201 - 1192 2.7e-07 30.7 50.8 5 9 3.4 4.7e+03 -1.9 0.6 16 23 527 534 513 536 0.70 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZBTB38-201 - 1192 2.7e-07 30.7 50.8 6 9 4.3e-07 0.00059 20.1 0.0 2 22 1007 1027 1006 1027 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZBTB38-201 - 1192 2.7e-07 30.7 50.8 7 9 0.3 4.1e+02 1.4 0.4 4 22 1037 1055 1034 1055 0.90 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZBTB38-201 - 1192 2.7e-07 30.7 50.8 8 9 0.0041 5.7 7.4 0.7 2 22 1063 1083 1062 1083 0.87 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZBTB38-201 - 1192 2.7e-07 30.7 50.8 9 9 0.0032 4.4 7.7 0.4 2 22 1122 1142 1121 1145 0.91 Zinc-finger double-stranded RNA-binding # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB38-201.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB38-201.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB38-201.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB38-201.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB38-201.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:57:35 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZBTB38-202 - 1196 1.4e-25 88.5 90.2 1 12 0.62 8.5e+02 0.7 1.3 15 25 343 353 338 354 0.85 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZBTB38-202 - 1196 1.4e-25 88.5 90.2 2 12 7.5e-06 0.01 16.2 0.7 2 26 358 383 358 383 0.89 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZBTB38-202 - 1196 1.4e-25 88.5 90.2 3 12 0.13 1.9e+02 2.8 0.0 5 26 450 472 448 472 0.77 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZBTB38-202 - 1196 1.4e-25 88.5 90.2 4 12 0.0003 0.42 11.1 1.4 1 25 475 499 475 499 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZBTB38-202 - 1196 1.4e-25 88.5 90.2 5 12 7.4e-08 0.0001 22.6 0.5 3 24 505 526 503 527 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZBTB38-202 - 1196 1.4e-25 88.5 90.2 6 12 5.7 7.9e+03 -2.4 0.7 7 18 942 954 941 955 0.76 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZBTB38-202 - 1196 1.4e-25 88.5 90.2 7 12 0.16 2.3e+02 2.5 0.2 10 21 977 989 970 993 0.85 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZBTB38-202 - 1196 1.4e-25 88.5 90.2 8 12 0.0027 3.7 8.2 0.3 9 24 1005 1020 1003 1022 0.86 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZBTB38-202 - 1196 1.4e-25 88.5 90.2 9 12 9.7e-09 1.3e-05 25.4 5.9 2 24 1026 1048 1025 1049 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZBTB38-202 - 1196 1.4e-25 88.5 90.2 10 12 2.9e-08 4e-05 23.8 0.4 1 25 1053 1077 1053 1077 0.97 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZBTB38-202 - 1196 1.4e-25 88.5 90.2 11 12 7.8e-07 0.0011 19.3 2.7 2 24 1082 1104 1081 1106 0.89 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZBTB38-202 - 1196 1.4e-25 88.5 90.2 12 12 0.00013 0.18 12.3 1.3 3 20 1115 1135 1115 1139 0.75 Zinc-finger double domain BTB PF00651.31 111 ZBTB38-202 - 1196 3.7e-22 78.6 0.1 1 1 5.4e-25 7.4e-22 77.7 0.1 1 106 24 127 24 132 0.89 BTB/POZ domain zf-C2H2 PF00096.26 23 ZBTB38-202 - 1196 1.4e-18 66.2 78.1 1 9 0.00026 0.36 11.4 2.0 1 23 343 365 343 365 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZBTB38-202 - 1196 1.4e-18 66.2 78.1 2 9 0.0003 0.41 11.2 0.3 2 20 373 391 372 393 0.91 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZBTB38-202 - 1196 1.4e-18 66.2 78.1 3 9 1.8e-06 0.0024 18.2 0.7 1 23 461 483 461 483 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZBTB38-202 - 1196 1.4e-18 66.2 78.1 4 9 0.00012 0.17 12.4 0.9 1 23 489 511 489 511 0.90 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZBTB38-202 - 1196 1.4e-18 66.2 78.1 5 9 0.64 8.9e+02 0.7 1.9 1 23 517 540 517 540 0.92 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZBTB38-202 - 1196 1.4e-18 66.2 78.1 6 9 0.00033 0.46 11.0 2.2 1 21 1011 1031 1011 1033 0.95 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZBTB38-202 - 1196 1.4e-18 66.2 78.1 7 9 3.5e-08 4.8e-05 23.6 2.1 1 23 1039 1061 1039 1061 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZBTB38-202 - 1196 1.4e-18 66.2 78.1 8 9 1.6e-06 0.0022 18.3 0.4 1 23 1067 1089 1067 1089 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZBTB38-202 - 1196 1.4e-18 66.2 78.1 9 9 0.00086 1.2 9.8 0.7 1 23 1126 1148 1126 1148 0.97 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZBTB38-202 - 1196 1.6e-16 59.6 82.9 1 11 6.8e-05 0.094 13.6 2.4 1 23 343 365 343 366 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZBTB38-202 - 1196 1.6e-16 59.6 82.9 2 11 6.1e-05 0.084 13.8 0.9 2 20 373 391 372 394 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZBTB38-202 - 1196 1.6e-16 59.6 82.9 3 11 4.5e-05 0.062 14.2 0.8 1 23 461 483 461 484 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZBTB38-202 - 1196 1.6e-16 59.6 82.9 4 11 0.0032 4.5 8.4 0.9 1 23 489 511 489 512 0.74 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZBTB38-202 - 1196 1.6e-16 59.6 82.9 5 11 0.0003 0.41 11.6 1.6 1 24 517 540 517 540 0.97 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZBTB38-202 - 1196 1.6e-16 59.6 82.9 6 11 8.8 1.2e+04 -2.3 0.1 2 7 984 989 983 991 0.80 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZBTB38-202 - 1196 1.6e-16 59.6 82.9 7 11 0.0005 0.69 10.9 2.1 1 21 1011 1031 1011 1033 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZBTB38-202 - 1196 1.6e-16 59.6 82.9 8 11 6.6e-05 0.092 13.6 1.7 1 23 1039 1061 1039 1062 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZBTB38-202 - 1196 1.6e-16 59.6 82.9 9 11 0.00015 0.2 12.6 0.4 1 23 1067 1089 1067 1090 0.91 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZBTB38-202 - 1196 1.6e-16 59.6 82.9 10 11 0.013 18 6.5 3.8 1 23 1095 1117 1095 1118 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZBTB38-202 - 1196 1.6e-16 59.6 82.9 11 11 0.014 19 6.4 0.8 1 23 1126 1148 1126 1149 0.95 C2H2-type zinc finger zf-C2H2_jaz PF12171.8 27 ZBTB38-202 - 1196 2.8e-07 30.6 50.8 1 9 0.042 57 4.2 0.7 2 21 343 362 342 363 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZBTB38-202 - 1196 2.8e-07 30.6 50.8 2 9 2.6e-05 0.036 14.4 0.2 4 21 374 391 371 392 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZBTB38-202 - 1196 2.8e-07 30.6 50.8 3 9 0.01 14 6.1 0.0 2 20 461 479 460 481 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZBTB38-202 - 1196 2.8e-07 30.6 50.8 4 9 0.073 1e+02 3.4 0.3 2 11 489 498 488 507 0.89 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZBTB38-202 - 1196 2.8e-07 30.6 50.8 5 9 3.4 4.7e+03 -1.9 0.6 16 23 531 538 517 540 0.70 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZBTB38-202 - 1196 2.8e-07 30.6 50.8 6 9 4.3e-07 0.00059 20.0 0.0 2 22 1011 1031 1010 1031 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZBTB38-202 - 1196 2.8e-07 30.6 50.8 7 9 0.3 4.2e+02 1.4 0.4 4 22 1041 1059 1038 1059 0.90 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZBTB38-202 - 1196 2.8e-07 30.6 50.8 8 9 0.0041 5.7 7.4 0.7 2 22 1067 1087 1066 1087 0.87 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZBTB38-202 - 1196 2.8e-07 30.6 50.8 9 9 0.0032 4.4 7.7 0.4 2 22 1126 1146 1125 1149 0.91 Zinc-finger double-stranded RNA-binding # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB38-202.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB38-202.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB38-202.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB38-202.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB38-202.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:57:36 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB38-203.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB38-203.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB38-203.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB38-203.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB38-203.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:57:36 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB38-204.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB38-204.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB38-204.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB38-204.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB38-204.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:57:36 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB38-205.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB38-205.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB38-205.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB38-205.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB38-205.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:57:37 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB38-206.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB38-206.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB38-206.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB38-206.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB38-206.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:57:37 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB38-207.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB38-207.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB38-207.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB38-207.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB38-207.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:57:37 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB38-208.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB38-208.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB38-208.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB38-208.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB38-208.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:57:38 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB38-209.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB38-209.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB38-209.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB38-209.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB38-209.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:57:38 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB38-210.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB38-210.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB38-210.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB38-210.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB38-210.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:57:38 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB38-211.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB38-211.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB38-211.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB38-211.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB38-211.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:57:39 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB38-212.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB38-212.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB38-212.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB38-212.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB38-212.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:57:39 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB38-213.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB38-213.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB38-213.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB38-213.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB38-213.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:57:39 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB38-214.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB38-214.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB38-214.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB38-214.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB38-214.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:57:40 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB38-216.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB38-216.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB38-216.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB38-216.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB38-216.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:57:40 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB38-217.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB38-217.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB38-217.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB38-217.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB38-217.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:57:41 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB38-218.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB38-218.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB38-218.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB38-218.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB38-218.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:57:41 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB38-219.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB38-219.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB38-219.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB38-219.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB38-219.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:57:41 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZBTB38-220 - 1192 1.4e-25 88.5 90.2 1 12 0.62 8.5e+02 0.7 1.3 15 25 339 349 334 350 0.85 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZBTB38-220 - 1192 1.4e-25 88.5 90.2 2 12 7.5e-06 0.01 16.2 0.7 2 26 354 379 354 379 0.89 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZBTB38-220 - 1192 1.4e-25 88.5 90.2 3 12 0.13 1.8e+02 2.8 0.0 5 26 446 468 444 468 0.77 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZBTB38-220 - 1192 1.4e-25 88.5 90.2 4 12 0.0003 0.42 11.1 1.4 1 25 471 495 471 495 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZBTB38-220 - 1192 1.4e-25 88.5 90.2 5 12 7.4e-08 0.0001 22.6 0.5 3 24 501 522 499 523 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZBTB38-220 - 1192 1.4e-25 88.5 90.2 6 12 5.7 7.9e+03 -2.4 0.7 7 18 938 950 937 951 0.76 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZBTB38-220 - 1192 1.4e-25 88.5 90.2 7 12 0.16 2.3e+02 2.5 0.2 10 21 973 985 966 989 0.85 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZBTB38-220 - 1192 1.4e-25 88.5 90.2 8 12 0.0026 3.6 8.2 0.3 9 24 1001 1016 999 1018 0.86 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZBTB38-220 - 1192 1.4e-25 88.5 90.2 9 12 9.6e-09 1.3e-05 25.4 5.9 2 24 1022 1044 1021 1045 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZBTB38-220 - 1192 1.4e-25 88.5 90.2 10 12 2.9e-08 4e-05 23.9 0.4 1 25 1049 1073 1049 1073 0.97 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZBTB38-220 - 1192 1.4e-25 88.5 90.2 11 12 7.8e-07 0.0011 19.3 2.7 2 24 1078 1100 1077 1102 0.89 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZBTB38-220 - 1192 1.4e-25 88.5 90.2 12 12 0.00013 0.18 12.3 1.3 3 20 1111 1131 1111 1135 0.75 Zinc-finger double domain BTB PF00651.31 111 ZBTB38-220 - 1192 3.7e-22 78.6 0.1 1 1 5.3e-25 7.3e-22 77.7 0.1 1 106 20 123 20 128 0.89 BTB/POZ domain zf-C2H2 PF00096.26 23 ZBTB38-220 - 1192 1.4e-18 66.3 78.1 1 9 0.00026 0.35 11.4 2.0 1 23 339 361 339 361 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZBTB38-220 - 1192 1.4e-18 66.3 78.1 2 9 0.0003 0.41 11.2 0.3 2 20 369 387 368 389 0.91 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZBTB38-220 - 1192 1.4e-18 66.3 78.1 3 9 1.7e-06 0.0024 18.2 0.7 1 23 457 479 457 479 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZBTB38-220 - 1192 1.4e-18 66.3 78.1 4 9 0.00012 0.17 12.4 0.9 1 23 485 507 485 507 0.90 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZBTB38-220 - 1192 1.4e-18 66.3 78.1 5 9 0.64 8.8e+02 0.7 1.9 1 23 513 536 513 536 0.92 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZBTB38-220 - 1192 1.4e-18 66.3 78.1 6 9 0.00033 0.46 11.1 2.2 1 21 1007 1027 1007 1029 0.95 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZBTB38-220 - 1192 1.4e-18 66.3 78.1 7 9 3.4e-08 4.7e-05 23.6 2.1 1 23 1035 1057 1035 1057 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZBTB38-220 - 1192 1.4e-18 66.3 78.1 8 9 1.6e-06 0.0022 18.3 0.4 1 23 1063 1085 1063 1085 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZBTB38-220 - 1192 1.4e-18 66.3 78.1 9 9 0.00085 1.2 9.8 0.7 1 23 1122 1144 1122 1144 0.97 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZBTB38-220 - 1192 1.5e-16 59.6 82.9 1 11 6.8e-05 0.094 13.6 2.4 1 23 339 361 339 362 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZBTB38-220 - 1192 1.5e-16 59.6 82.9 2 11 6e-05 0.083 13.8 0.9 2 20 369 387 368 390 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZBTB38-220 - 1192 1.5e-16 59.6 82.9 3 11 4.5e-05 0.062 14.2 0.8 1 23 457 479 457 480 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZBTB38-220 - 1192 1.5e-16 59.6 82.9 4 11 0.0032 4.5 8.4 0.9 1 23 485 507 485 508 0.74 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZBTB38-220 - 1192 1.5e-16 59.6 82.9 5 11 0.0003 0.41 11.6 1.6 1 24 513 536 513 536 0.97 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZBTB38-220 - 1192 1.5e-16 59.6 82.9 6 11 8.7 1.2e+04 -2.3 0.1 2 7 980 985 979 987 0.80 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZBTB38-220 - 1192 1.5e-16 59.6 82.9 7 11 0.0005 0.69 10.9 2.1 1 21 1007 1027 1007 1029 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZBTB38-220 - 1192 1.5e-16 59.6 82.9 8 11 6.6e-05 0.091 13.6 1.7 1 23 1035 1057 1035 1058 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZBTB38-220 - 1192 1.5e-16 59.6 82.9 9 11 0.00015 0.2 12.6 0.4 1 23 1063 1085 1063 1086 0.91 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZBTB38-220 - 1192 1.5e-16 59.6 82.9 10 11 0.013 18 6.5 3.8 1 23 1091 1113 1091 1114 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZBTB38-220 - 1192 1.5e-16 59.6 82.9 11 11 0.014 19 6.4 0.8 1 23 1122 1144 1122 1145 0.95 C2H2-type zinc finger zf-C2H2_jaz PF12171.8 27 ZBTB38-220 - 1192 2.7e-07 30.7 50.8 1 9 0.042 57 4.2 0.7 2 21 339 358 338 359 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZBTB38-220 - 1192 2.7e-07 30.7 50.8 2 9 2.6e-05 0.036 14.4 0.2 4 21 370 387 367 388 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZBTB38-220 - 1192 2.7e-07 30.7 50.8 3 9 0.01 14 6.1 0.0 2 20 457 475 456 477 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZBTB38-220 - 1192 2.7e-07 30.7 50.8 4 9 0.073 1e+02 3.4 0.3 2 11 485 494 484 503 0.89 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZBTB38-220 - 1192 2.7e-07 30.7 50.8 5 9 3.4 4.7e+03 -1.9 0.6 16 23 527 534 513 536 0.70 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZBTB38-220 - 1192 2.7e-07 30.7 50.8 6 9 4.3e-07 0.00059 20.1 0.0 2 22 1007 1027 1006 1027 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZBTB38-220 - 1192 2.7e-07 30.7 50.8 7 9 0.3 4.1e+02 1.4 0.4 4 22 1037 1055 1034 1055 0.90 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZBTB38-220 - 1192 2.7e-07 30.7 50.8 8 9 0.0041 5.7 7.4 0.7 2 22 1063 1083 1062 1083 0.87 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZBTB38-220 - 1192 2.7e-07 30.7 50.8 9 9 0.0032 4.4 7.7 0.4 2 22 1122 1142 1121 1145 0.91 Zinc-finger double-stranded RNA-binding # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB38-220.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB38-220.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB38-220.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB38-220.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB38-220.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:57:42 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB38-221.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB38-221.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB38-221.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB38-221.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB38-221.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:57:42 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZBTB38-222 - 1192 1.4e-25 88.5 90.2 1 12 0.62 8.5e+02 0.7 1.3 15 25 339 349 334 350 0.85 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZBTB38-222 - 1192 1.4e-25 88.5 90.2 2 12 7.5e-06 0.01 16.2 0.7 2 26 354 379 354 379 0.89 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZBTB38-222 - 1192 1.4e-25 88.5 90.2 3 12 0.13 1.8e+02 2.8 0.0 5 26 446 468 444 468 0.77 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZBTB38-222 - 1192 1.4e-25 88.5 90.2 4 12 0.0003 0.42 11.1 1.4 1 25 471 495 471 495 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZBTB38-222 - 1192 1.4e-25 88.5 90.2 5 12 7.4e-08 0.0001 22.6 0.5 3 24 501 522 499 523 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZBTB38-222 - 1192 1.4e-25 88.5 90.2 6 12 5.7 7.9e+03 -2.4 0.7 7 18 938 950 937 951 0.76 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZBTB38-222 - 1192 1.4e-25 88.5 90.2 7 12 0.16 2.3e+02 2.5 0.2 10 21 973 985 966 989 0.85 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZBTB38-222 - 1192 1.4e-25 88.5 90.2 8 12 0.0026 3.6 8.2 0.3 9 24 1001 1016 999 1018 0.86 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZBTB38-222 - 1192 1.4e-25 88.5 90.2 9 12 9.6e-09 1.3e-05 25.4 5.9 2 24 1022 1044 1021 1045 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZBTB38-222 - 1192 1.4e-25 88.5 90.2 10 12 2.9e-08 4e-05 23.9 0.4 1 25 1049 1073 1049 1073 0.97 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZBTB38-222 - 1192 1.4e-25 88.5 90.2 11 12 7.8e-07 0.0011 19.3 2.7 2 24 1078 1100 1077 1102 0.89 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZBTB38-222 - 1192 1.4e-25 88.5 90.2 12 12 0.00013 0.18 12.3 1.3 3 20 1111 1131 1111 1135 0.75 Zinc-finger double domain BTB PF00651.31 111 ZBTB38-222 - 1192 3.7e-22 78.6 0.1 1 1 5.3e-25 7.3e-22 77.7 0.1 1 106 20 123 20 128 0.89 BTB/POZ domain zf-C2H2 PF00096.26 23 ZBTB38-222 - 1192 1.4e-18 66.3 78.1 1 9 0.00026 0.35 11.4 2.0 1 23 339 361 339 361 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZBTB38-222 - 1192 1.4e-18 66.3 78.1 2 9 0.0003 0.41 11.2 0.3 2 20 369 387 368 389 0.91 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZBTB38-222 - 1192 1.4e-18 66.3 78.1 3 9 1.7e-06 0.0024 18.2 0.7 1 23 457 479 457 479 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZBTB38-222 - 1192 1.4e-18 66.3 78.1 4 9 0.00012 0.17 12.4 0.9 1 23 485 507 485 507 0.90 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZBTB38-222 - 1192 1.4e-18 66.3 78.1 5 9 0.64 8.8e+02 0.7 1.9 1 23 513 536 513 536 0.92 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZBTB38-222 - 1192 1.4e-18 66.3 78.1 6 9 0.00033 0.46 11.1 2.2 1 21 1007 1027 1007 1029 0.95 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZBTB38-222 - 1192 1.4e-18 66.3 78.1 7 9 3.4e-08 4.7e-05 23.6 2.1 1 23 1035 1057 1035 1057 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZBTB38-222 - 1192 1.4e-18 66.3 78.1 8 9 1.6e-06 0.0022 18.3 0.4 1 23 1063 1085 1063 1085 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZBTB38-222 - 1192 1.4e-18 66.3 78.1 9 9 0.00085 1.2 9.8 0.7 1 23 1122 1144 1122 1144 0.97 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZBTB38-222 - 1192 1.5e-16 59.6 82.9 1 11 6.8e-05 0.094 13.6 2.4 1 23 339 361 339 362 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZBTB38-222 - 1192 1.5e-16 59.6 82.9 2 11 6e-05 0.083 13.8 0.9 2 20 369 387 368 390 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZBTB38-222 - 1192 1.5e-16 59.6 82.9 3 11 4.5e-05 0.062 14.2 0.8 1 23 457 479 457 480 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZBTB38-222 - 1192 1.5e-16 59.6 82.9 4 11 0.0032 4.5 8.4 0.9 1 23 485 507 485 508 0.74 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZBTB38-222 - 1192 1.5e-16 59.6 82.9 5 11 0.0003 0.41 11.6 1.6 1 24 513 536 513 536 0.97 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZBTB38-222 - 1192 1.5e-16 59.6 82.9 6 11 8.7 1.2e+04 -2.3 0.1 2 7 980 985 979 987 0.80 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZBTB38-222 - 1192 1.5e-16 59.6 82.9 7 11 0.0005 0.69 10.9 2.1 1 21 1007 1027 1007 1029 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZBTB38-222 - 1192 1.5e-16 59.6 82.9 8 11 6.6e-05 0.091 13.6 1.7 1 23 1035 1057 1035 1058 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZBTB38-222 - 1192 1.5e-16 59.6 82.9 9 11 0.00015 0.2 12.6 0.4 1 23 1063 1085 1063 1086 0.91 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZBTB38-222 - 1192 1.5e-16 59.6 82.9 10 11 0.013 18 6.5 3.8 1 23 1091 1113 1091 1114 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZBTB38-222 - 1192 1.5e-16 59.6 82.9 11 11 0.014 19 6.4 0.8 1 23 1122 1144 1122 1145 0.95 C2H2-type zinc finger zf-C2H2_jaz PF12171.8 27 ZBTB38-222 - 1192 2.7e-07 30.7 50.8 1 9 0.042 57 4.2 0.7 2 21 339 358 338 359 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZBTB38-222 - 1192 2.7e-07 30.7 50.8 2 9 2.6e-05 0.036 14.4 0.2 4 21 370 387 367 388 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZBTB38-222 - 1192 2.7e-07 30.7 50.8 3 9 0.01 14 6.1 0.0 2 20 457 475 456 477 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZBTB38-222 - 1192 2.7e-07 30.7 50.8 4 9 0.073 1e+02 3.4 0.3 2 11 485 494 484 503 0.89 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZBTB38-222 - 1192 2.7e-07 30.7 50.8 5 9 3.4 4.7e+03 -1.9 0.6 16 23 527 534 513 536 0.70 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZBTB38-222 - 1192 2.7e-07 30.7 50.8 6 9 4.3e-07 0.00059 20.1 0.0 2 22 1007 1027 1006 1027 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZBTB38-222 - 1192 2.7e-07 30.7 50.8 7 9 0.3 4.1e+02 1.4 0.4 4 22 1037 1055 1034 1055 0.90 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZBTB38-222 - 1192 2.7e-07 30.7 50.8 8 9 0.0041 5.7 7.4 0.7 2 22 1063 1083 1062 1083 0.87 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZBTB38-222 - 1192 2.7e-07 30.7 50.8 9 9 0.0032 4.4 7.7 0.4 2 22 1122 1142 1121 1145 0.91 Zinc-finger double-stranded RNA-binding # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB38-222.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB38-222.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB38-222.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB38-222.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB38-222.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:57:42 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB38-223.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB38-223.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB38-223.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB38-223.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB38-223.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:57:43 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- BTB PF00651.31 111 ZBTB39-201 - 712 5.5e-24 84.5 0.0 1 1 4.8e-27 1.1e-23 83.6 0.0 1 105 20 120 20 124 0.93 BTB/POZ domain zf-H2C2_2 PF13465.6 26 ZBTB39-201 - 712 8e-15 54.5 46.9 1 11 4.7 1e+04 -2.8 0.3 17 22 345 350 342 351 0.87 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZBTB39-201 - 712 8e-15 54.5 46.9 2 11 0.014 32 5.2 0.1 4 24 389 409 386 412 0.84 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZBTB39-201 - 712 8e-15 54.5 46.9 3 11 0.44 9.8e+02 0.5 0.0 15 23 451 459 441 462 0.85 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZBTB39-201 - 712 8e-15 54.5 46.9 4 11 0.29 6.5e+02 1.0 0.0 5 22 470 487 467 491 0.82 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZBTB39-201 - 712 8e-15 54.5 46.9 5 11 0.00011 0.26 11.8 0.0 1 25 494 518 494 519 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZBTB39-201 - 712 8e-15 54.5 46.9 6 11 5.9e-05 0.13 12.7 0.3 2 26 523 549 523 549 0.84 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZBTB39-201 - 712 8e-15 54.5 46.9 7 11 2.6 5.7e+03 -1.9 0.1 1 10 552 561 552 562 0.84 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZBTB39-201 - 712 8e-15 54.5 46.9 8 11 0.0006 1.3 9.5 0.3 10 26 600 616 597 616 0.88 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZBTB39-201 - 712 8e-15 54.5 46.9 9 11 1.3e-10 2.9e-07 30.6 5.2 2 24 620 642 619 643 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZBTB39-201 - 712 8e-15 54.5 46.9 10 11 0.0033 7.5 7.2 0.7 5 23 651 669 651 672 0.89 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZBTB39-201 - 712 8e-15 54.5 46.9 11 11 1 2.3e+03 -0.7 0.0 3 12 677 686 676 691 0.84 Zinc-finger double domain zf-C2H2_4 PF13894.6 24 ZBTB39-201 - 712 2.6e-07 30.9 76.2 1 10 0.075 1.7e+02 3.5 0.1 2 23 344 366 344 367 0.80 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZBTB39-201 - 712 2.6e-07 30.9 76.2 2 10 0.0079 18 6.5 1.2 3 23 374 394 373 395 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZBTB39-201 - 712 2.6e-07 30.9 76.2 3 10 0.0042 9.4 7.4 0.5 1 21 400 420 400 421 0.90 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZBTB39-201 - 712 2.6e-07 30.9 76.2 4 10 0.18 4e+02 2.3 0.1 2 23 452 474 451 475 0.80 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZBTB39-201 - 712 2.6e-07 30.9 76.2 5 10 1.5 3.4e+03 -0.6 1.7 3 19 482 498 481 503 0.72 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZBTB39-201 - 712 2.6e-07 30.9 76.2 6 10 7.4e-05 0.17 12.8 0.7 1 23 508 530 508 531 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZBTB39-201 - 712 2.6e-07 30.9 76.2 7 10 3.1e-05 0.07 14.0 3.4 1 23 538 560 538 561 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZBTB39-201 - 712 2.6e-07 30.9 76.2 8 10 0.00025 0.56 11.2 2.4 1 23 605 627 605 628 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZBTB39-201 - 712 2.6e-07 30.9 76.2 9 10 0.0013 3 8.9 6.5 1 23 633 655 633 656 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZBTB39-201 - 712 2.6e-07 30.9 76.2 10 10 0.0022 4.9 8.3 1.2 1 23 661 683 661 684 0.87 C2H2-type zinc finger # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB39-201.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB39-201.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB39-201.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB39-201.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB39-201.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:57:43 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-C2H2 PF00096.26 23 ZBTB40-201 - 1127 1.6e-32 110.2 102.4 1 14 0.017 19 6.0 4.8 1 22 624 645 624 645 0.95 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZBTB40-201 - 1127 1.6e-32 110.2 102.4 2 14 0.065 73 4.1 0.3 2 23 655 677 654 677 0.93 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZBTB40-201 - 1127 1.6e-32 110.2 102.4 3 14 0.00025 0.28 11.7 0.4 2 23 696 718 695 718 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZBTB40-201 - 1127 1.6e-32 110.2 102.4 4 14 1.1e-06 0.0012 19.2 0.2 1 23 724 746 724 746 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZBTB40-201 - 1127 1.6e-32 110.2 102.4 5 14 0.00012 0.13 12.8 3.1 1 23 752 775 752 775 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZBTB40-201 - 1127 1.6e-32 110.2 102.4 6 14 1.8e-06 0.002 18.5 0.1 1 23 781 803 781 803 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZBTB40-201 - 1127 1.6e-32 110.2 102.4 7 14 3.5e-06 0.0039 17.6 0.7 1 23 809 832 809 832 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZBTB40-201 - 1127 1.6e-32 110.2 102.4 8 14 0.01 11 6.7 4.1 1 23 838 861 838 861 0.94 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZBTB40-201 - 1127 1.6e-32 110.2 102.4 9 14 4.8e-08 5.3e-05 23.4 0.2 1 23 866 888 866 888 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZBTB40-201 - 1127 1.6e-32 110.2 102.4 10 14 0.00036 0.41 11.2 0.8 1 23 894 916 894 917 0.95 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZBTB40-201 - 1127 1.6e-32 110.2 102.4 11 14 0.002 2.2 8.9 1.1 2 23 935 957 934 957 0.93 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZBTB40-201 - 1127 1.6e-32 110.2 102.4 12 14 0.0011 1.3 9.7 1.2 1 21 963 983 963 986 0.93 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZBTB40-201 - 1127 1.6e-32 110.2 102.4 13 14 0.00034 0.38 11.3 0.8 1 23 992 1015 992 1015 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZBTB40-201 - 1127 1.6e-32 110.2 102.4 14 14 8.7e-05 0.098 13.2 0.0 1 23 1023 1046 1023 1046 0.95 Zinc finger, C2H2 type zf-H2C2_2 PF13465.6 26 ZBTB40-201 - 1127 1.1e-31 107.8 98.0 1 14 0.24 2.7e+02 2.3 1.2 15 24 624 633 619 634 0.82 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZBTB40-201 - 1127 1.1e-31 107.8 98.0 2 14 0.43 4.8e+02 1.5 1.4 3 22 640 661 638 663 0.64 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZBTB40-201 - 1127 1.1e-31 107.8 98.0 3 14 0.0041 4.6 7.8 0.1 12 26 690 706 669 706 0.77 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZBTB40-201 - 1127 1.1e-31 107.8 98.0 4 14 4.7e-05 0.053 14.0 0.4 2 25 710 734 709 735 0.87 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZBTB40-201 - 1127 1.1e-31 107.8 98.0 5 14 1.5e-07 0.00016 21.9 1.5 2 25 739 762 738 763 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZBTB40-201 - 1127 1.1e-31 107.8 98.0 6 14 1.2e-05 0.013 15.9 0.3 1 25 766 791 766 792 0.82 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZBTB40-201 - 1127 1.1e-31 107.8 98.0 7 14 3.1e-10 3.4e-07 30.4 0.3 2 25 796 819 795 820 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZBTB40-201 - 1127 1.1e-31 107.8 98.0 8 14 0.00065 0.73 10.4 0.8 2 24 824 847 823 849 0.86 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZBTB40-201 - 1127 1.1e-31 107.8 98.0 9 14 0.007 7.8 7.1 3.8 5 24 853 875 850 877 0.65 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZBTB40-201 - 1127 1.1e-31 107.8 98.0 10 14 6.6e-05 0.074 13.5 0.1 2 24 881 903 880 903 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZBTB40-201 - 1127 1.1e-31 107.8 98.0 11 14 3.1e-05 0.035 14.6 2.9 1 24 908 943 908 945 0.75 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZBTB40-201 - 1127 1.1e-31 107.8 98.0 12 14 0.00054 0.61 10.6 2.2 3 24 950 972 950 974 0.89 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZBTB40-201 - 1127 1.1e-31 107.8 98.0 13 14 0.00042 0.47 11.0 0.8 2 24 978 1001 978 1002 0.90 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZBTB40-201 - 1127 1.1e-31 107.8 98.0 14 14 0.007 7.8 7.1 0.7 1 25 1006 1033 1006 1034 0.71 Zinc-finger double domain zf-C2H2_4 PF13894.6 24 ZBTB40-201 - 1127 4.7e-28 95.4 101.7 1 14 0.0045 5.1 8.2 6.9 1 22 624 645 624 647 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZBTB40-201 - 1127 4.7e-28 95.4 101.7 2 14 0.0025 2.8 9.0 0.4 2 24 655 677 654 677 0.91 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZBTB40-201 - 1127 4.7e-28 95.4 101.7 3 14 0.0014 1.6 9.8 0.4 2 24 696 718 695 718 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZBTB40-201 - 1127 4.7e-28 95.4 101.7 4 14 4.6e-05 0.051 14.4 0.2 1 23 724 746 724 747 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZBTB40-201 - 1127 4.7e-28 95.4 101.7 5 14 0.0035 4 8.6 2.9 1 24 752 775 752 775 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZBTB40-201 - 1127 4.7e-28 95.4 101.7 6 14 6.7e-06 0.0075 17.0 0.2 1 23 781 803 781 804 0.97 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZBTB40-201 - 1127 4.7e-28 95.4 101.7 7 14 0.00033 0.37 11.8 0.5 1 24 809 832 809 832 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZBTB40-201 - 1127 4.7e-28 95.4 101.7 8 14 0.0089 9.9 7.3 3.4 3 24 840 861 838 861 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZBTB40-201 - 1127 4.7e-28 95.4 101.7 9 14 4.3e-05 0.048 14.5 0.2 1 23 866 888 866 889 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZBTB40-201 - 1127 4.7e-28 95.4 101.7 10 14 0.0058 6.5 7.9 0.8 1 24 894 917 894 917 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZBTB40-201 - 1127 4.7e-28 95.4 101.7 11 14 0.00073 0.82 10.7 1.1 2 24 935 957 934 957 0.91 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZBTB40-201 - 1127 4.7e-28 95.4 101.7 12 14 0.0035 3.9 8.6 1.6 1 21 963 983 963 986 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZBTB40-201 - 1127 4.7e-28 95.4 101.7 13 14 0.00012 0.14 13.1 0.9 1 24 992 1015 992 1015 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZBTB40-201 - 1127 4.7e-28 95.4 101.7 14 14 1.3e-05 0.015 16.1 0.1 1 24 1023 1046 1023 1046 0.96 C2H2-type zinc finger BTB PF00651.31 111 ZBTB40-201 - 1127 3.3e-21 75.6 0.8 1 1 8.6e-24 9.6e-21 74.1 0.8 4 108 17 114 14 116 0.92 BTB/POZ domain # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB40-201.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB40-201.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB40-201.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB40-201.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB40-201.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:57:44 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-C2H2 PF00096.26 23 ZBTB40-202 - 1239 1.1e-33 113.8 96.7 1 14 0.02 21 5.8 4.8 1 22 736 757 736 757 0.95 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZBTB40-202 - 1239 1.1e-33 113.8 96.7 2 14 0.077 81 4.0 0.3 2 23 767 789 766 789 0.93 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZBTB40-202 - 1239 1.1e-33 113.8 96.7 3 14 0.0003 0.31 11.6 0.4 2 23 808 830 807 830 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZBTB40-202 - 1239 1.1e-33 113.8 96.7 4 14 1.3e-06 0.0013 19.0 0.2 1 23 836 858 836 858 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZBTB40-202 - 1239 1.1e-33 113.8 96.7 5 14 0.00014 0.14 12.6 3.1 1 23 864 887 864 887 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZBTB40-202 - 1239 1.1e-33 113.8 96.7 6 14 2.1e-06 0.0022 18.3 0.1 1 23 893 915 893 915 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZBTB40-202 - 1239 1.1e-33 113.8 96.7 7 14 4.1e-06 0.0044 17.4 0.7 1 23 921 944 921 944 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZBTB40-202 - 1239 1.1e-33 113.8 96.7 8 14 0.012 13 6.5 4.1 1 23 950 973 950 973 0.94 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZBTB40-202 - 1239 1.1e-33 113.8 96.7 9 14 5.6e-08 5.9e-05 23.3 0.2 1 23 978 1000 978 1000 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZBTB40-202 - 1239 1.1e-33 113.8 96.7 10 14 0.00043 0.45 11.1 0.8 1 23 1006 1028 1006 1029 0.95 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZBTB40-202 - 1239 1.1e-33 113.8 96.7 11 14 0.0023 2.4 8.8 1.1 2 23 1047 1069 1046 1069 0.93 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZBTB40-202 - 1239 1.1e-33 113.8 96.7 12 14 0.0013 1.4 9.5 1.2 1 21 1075 1095 1075 1098 0.93 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZBTB40-202 - 1239 1.1e-33 113.8 96.7 13 14 0.0004 0.42 11.2 0.8 1 23 1104 1127 1104 1127 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZBTB40-202 - 1239 1.1e-33 113.8 96.7 14 14 0.0001 0.11 13.0 0.0 1 23 1135 1158 1135 1158 0.95 Zinc finger, C2H2 type zf-H2C2_2 PF13465.6 26 ZBTB40-202 - 1239 2.4e-31 106.7 97.1 1 14 0.28 3e+02 2.1 1.2 15 24 736 745 731 746 0.82 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZBTB40-202 - 1239 2.4e-31 106.7 97.1 2 14 0.51 5.4e+02 1.3 1.4 3 22 752 773 750 775 0.64 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZBTB40-202 - 1239 2.4e-31 106.7 97.1 3 14 0.0048 5.1 7.7 0.1 12 26 802 818 781 818 0.77 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZBTB40-202 - 1239 2.4e-31 106.7 97.1 4 14 5.6e-05 0.059 13.8 0.4 2 25 822 846 821 847 0.87 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZBTB40-202 - 1239 2.4e-31 106.7 97.1 5 14 1.7e-07 0.00018 21.8 1.5 2 25 851 874 850 875 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZBTB40-202 - 1239 2.4e-31 106.7 97.1 6 14 1.4e-05 0.015 15.7 0.3 1 25 878 903 878 904 0.82 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZBTB40-202 - 1239 2.4e-31 106.7 97.1 7 14 3.6e-10 3.8e-07 30.2 0.3 2 25 908 931 907 932 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZBTB40-202 - 1239 2.4e-31 106.7 97.1 8 14 0.00076 0.81 10.2 0.8 2 24 936 959 935 961 0.86 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZBTB40-202 - 1239 2.4e-31 106.7 97.1 9 14 0.0083 8.7 7.0 3.8 5 24 965 987 962 989 0.65 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZBTB40-202 - 1239 2.4e-31 106.7 97.1 10 14 7.8e-05 0.083 13.4 0.1 2 24 993 1015 992 1015 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZBTB40-202 - 1239 2.4e-31 106.7 97.1 11 14 2.1e-05 0.022 15.2 2.2 1 24 1020 1055 1020 1057 0.75 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZBTB40-202 - 1239 2.4e-31 106.7 97.1 12 14 0.00064 0.67 10.5 2.2 3 24 1062 1084 1062 1086 0.89 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZBTB40-202 - 1239 2.4e-31 106.7 97.1 13 14 0.00049 0.52 10.8 0.8 2 24 1090 1113 1090 1114 0.90 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZBTB40-202 - 1239 2.4e-31 106.7 97.1 14 14 0.0082 8.7 7.0 0.7 1 25 1118 1145 1118 1146 0.71 Zinc-finger double domain zf-C2H2_4 PF13894.6 24 ZBTB40-202 - 1239 2.1e-27 93.4 101.7 1 14 0.0054 5.7 8.1 6.9 1 22 736 757 736 759 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZBTB40-202 - 1239 2.1e-27 93.4 101.7 2 14 0.0029 3.1 8.9 0.4 2 24 767 789 766 789 0.91 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZBTB40-202 - 1239 2.1e-27 93.4 101.7 3 14 0.0017 1.8 9.6 0.4 2 24 808 830 807 830 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZBTB40-202 - 1239 2.1e-27 93.4 101.7 4 14 5.4e-05 0.057 14.3 0.2 1 23 836 858 836 859 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZBTB40-202 - 1239 2.1e-27 93.4 101.7 5 14 0.0042 4.4 8.4 2.9 1 24 864 887 864 887 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZBTB40-202 - 1239 2.1e-27 93.4 101.7 6 14 7.9e-06 0.0084 16.9 0.2 1 23 893 915 893 916 0.97 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZBTB40-202 - 1239 2.1e-27 93.4 101.7 7 14 0.00039 0.41 11.6 0.5 1 24 921 944 921 944 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZBTB40-202 - 1239 2.1e-27 93.4 101.7 8 14 0.01 11 7.2 3.4 3 24 952 973 950 973 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZBTB40-202 - 1239 2.1e-27 93.4 101.7 9 14 5.1e-05 0.054 14.4 0.2 1 23 978 1000 978 1001 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZBTB40-202 - 1239 2.1e-27 93.4 101.7 10 14 0.0069 7.3 7.7 0.8 1 24 1006 1029 1006 1029 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZBTB40-202 - 1239 2.1e-27 93.4 101.7 11 14 0.00087 0.91 10.5 1.1 2 24 1047 1069 1046 1069 0.91 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZBTB40-202 - 1239 2.1e-27 93.4 101.7 12 14 0.0041 4.4 8.4 1.6 1 21 1075 1095 1075 1098 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZBTB40-202 - 1239 2.1e-27 93.4 101.7 13 14 0.00014 0.15 13.0 0.9 1 24 1104 1127 1104 1127 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZBTB40-202 - 1239 2.1e-27 93.4 101.7 14 14 1.6e-05 0.016 16.0 0.1 1 24 1135 1158 1135 1158 0.96 C2H2-type zinc finger BTB PF00651.31 111 ZBTB40-202 - 1239 3.7e-21 75.4 0.8 1 1 1e-23 1.1e-20 73.9 0.8 4 108 17 114 14 116 0.92 BTB/POZ domain # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB40-202.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB40-202.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB40-202.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB40-202.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB40-202.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:57:44 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB40-203.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB40-203.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB40-203.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB40-203.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB40-203.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:57:45 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-C2H2 PF00096.26 23 ZBTB40-204 - 1239 1.1e-33 113.8 96.7 1 14 0.02 21 5.8 4.8 1 22 736 757 736 757 0.95 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZBTB40-204 - 1239 1.1e-33 113.8 96.7 2 14 0.077 81 4.0 0.3 2 23 767 789 766 789 0.93 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZBTB40-204 - 1239 1.1e-33 113.8 96.7 3 14 0.0003 0.31 11.6 0.4 2 23 808 830 807 830 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZBTB40-204 - 1239 1.1e-33 113.8 96.7 4 14 1.3e-06 0.0013 19.0 0.2 1 23 836 858 836 858 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZBTB40-204 - 1239 1.1e-33 113.8 96.7 5 14 0.00014 0.14 12.6 3.1 1 23 864 887 864 887 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZBTB40-204 - 1239 1.1e-33 113.8 96.7 6 14 2.1e-06 0.0022 18.3 0.1 1 23 893 915 893 915 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZBTB40-204 - 1239 1.1e-33 113.8 96.7 7 14 4.1e-06 0.0044 17.4 0.7 1 23 921 944 921 944 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZBTB40-204 - 1239 1.1e-33 113.8 96.7 8 14 0.012 13 6.5 4.1 1 23 950 973 950 973 0.94 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZBTB40-204 - 1239 1.1e-33 113.8 96.7 9 14 5.6e-08 5.9e-05 23.3 0.2 1 23 978 1000 978 1000 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZBTB40-204 - 1239 1.1e-33 113.8 96.7 10 14 0.00043 0.45 11.1 0.8 1 23 1006 1028 1006 1029 0.95 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZBTB40-204 - 1239 1.1e-33 113.8 96.7 11 14 0.0023 2.4 8.8 1.1 2 23 1047 1069 1046 1069 0.93 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZBTB40-204 - 1239 1.1e-33 113.8 96.7 12 14 0.0013 1.4 9.5 1.2 1 21 1075 1095 1075 1098 0.93 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZBTB40-204 - 1239 1.1e-33 113.8 96.7 13 14 0.0004 0.42 11.2 0.8 1 23 1104 1127 1104 1127 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZBTB40-204 - 1239 1.1e-33 113.8 96.7 14 14 0.0001 0.11 13.0 0.0 1 23 1135 1158 1135 1158 0.95 Zinc finger, C2H2 type zf-H2C2_2 PF13465.6 26 ZBTB40-204 - 1239 2.4e-31 106.7 97.1 1 14 0.28 3e+02 2.1 1.2 15 24 736 745 731 746 0.82 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZBTB40-204 - 1239 2.4e-31 106.7 97.1 2 14 0.51 5.4e+02 1.3 1.4 3 22 752 773 750 775 0.64 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZBTB40-204 - 1239 2.4e-31 106.7 97.1 3 14 0.0048 5.1 7.7 0.1 12 26 802 818 781 818 0.77 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZBTB40-204 - 1239 2.4e-31 106.7 97.1 4 14 5.6e-05 0.059 13.8 0.4 2 25 822 846 821 847 0.87 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZBTB40-204 - 1239 2.4e-31 106.7 97.1 5 14 1.7e-07 0.00018 21.8 1.5 2 25 851 874 850 875 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZBTB40-204 - 1239 2.4e-31 106.7 97.1 6 14 1.4e-05 0.015 15.7 0.3 1 25 878 903 878 904 0.82 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZBTB40-204 - 1239 2.4e-31 106.7 97.1 7 14 3.6e-10 3.8e-07 30.2 0.3 2 25 908 931 907 932 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZBTB40-204 - 1239 2.4e-31 106.7 97.1 8 14 0.00076 0.81 10.2 0.8 2 24 936 959 935 961 0.86 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZBTB40-204 - 1239 2.4e-31 106.7 97.1 9 14 0.0083 8.7 7.0 3.8 5 24 965 987 962 989 0.65 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZBTB40-204 - 1239 2.4e-31 106.7 97.1 10 14 7.8e-05 0.083 13.4 0.1 2 24 993 1015 992 1015 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZBTB40-204 - 1239 2.4e-31 106.7 97.1 11 14 2.1e-05 0.022 15.2 2.2 1 24 1020 1055 1020 1057 0.75 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZBTB40-204 - 1239 2.4e-31 106.7 97.1 12 14 0.00064 0.67 10.5 2.2 3 24 1062 1084 1062 1086 0.89 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZBTB40-204 - 1239 2.4e-31 106.7 97.1 13 14 0.00049 0.52 10.8 0.8 2 24 1090 1113 1090 1114 0.90 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZBTB40-204 - 1239 2.4e-31 106.7 97.1 14 14 0.0082 8.7 7.0 0.7 1 25 1118 1145 1118 1146 0.71 Zinc-finger double domain zf-C2H2_4 PF13894.6 24 ZBTB40-204 - 1239 2.1e-27 93.4 101.7 1 14 0.0054 5.7 8.1 6.9 1 22 736 757 736 759 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZBTB40-204 - 1239 2.1e-27 93.4 101.7 2 14 0.0029 3.1 8.9 0.4 2 24 767 789 766 789 0.91 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZBTB40-204 - 1239 2.1e-27 93.4 101.7 3 14 0.0017 1.8 9.6 0.4 2 24 808 830 807 830 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZBTB40-204 - 1239 2.1e-27 93.4 101.7 4 14 5.4e-05 0.057 14.3 0.2 1 23 836 858 836 859 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZBTB40-204 - 1239 2.1e-27 93.4 101.7 5 14 0.0042 4.4 8.4 2.9 1 24 864 887 864 887 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZBTB40-204 - 1239 2.1e-27 93.4 101.7 6 14 7.9e-06 0.0084 16.9 0.2 1 23 893 915 893 916 0.97 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZBTB40-204 - 1239 2.1e-27 93.4 101.7 7 14 0.00039 0.41 11.6 0.5 1 24 921 944 921 944 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZBTB40-204 - 1239 2.1e-27 93.4 101.7 8 14 0.01 11 7.2 3.4 3 24 952 973 950 973 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZBTB40-204 - 1239 2.1e-27 93.4 101.7 9 14 5.1e-05 0.054 14.4 0.2 1 23 978 1000 978 1001 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZBTB40-204 - 1239 2.1e-27 93.4 101.7 10 14 0.0069 7.3 7.7 0.8 1 24 1006 1029 1006 1029 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZBTB40-204 - 1239 2.1e-27 93.4 101.7 11 14 0.00087 0.91 10.5 1.1 2 24 1047 1069 1046 1069 0.91 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZBTB40-204 - 1239 2.1e-27 93.4 101.7 12 14 0.0041 4.4 8.4 1.6 1 21 1075 1095 1075 1098 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZBTB40-204 - 1239 2.1e-27 93.4 101.7 13 14 0.00014 0.15 13.0 0.9 1 24 1104 1127 1104 1127 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZBTB40-204 - 1239 2.1e-27 93.4 101.7 14 14 1.6e-05 0.016 16.0 0.1 1 24 1135 1158 1135 1158 0.96 C2H2-type zinc finger BTB PF00651.31 111 ZBTB40-204 - 1239 3.7e-21 75.4 0.8 1 1 1e-23 1.1e-20 73.9 0.8 4 108 17 114 14 116 0.92 BTB/POZ domain # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB40-204.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB40-204.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB40-204.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB40-204.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB40-204.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:57:45 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB40-205.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB40-205.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB40-205.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB40-205.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB40-205.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:57:45 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-C2H2 PF00096.26 23 ZBTB4-201 - 1013 1.7e-15 56.5 36.1 1 6 5.1e-05 0.046 14.2 0.2 2 19 235 252 234 254 0.94 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZBTB4-201 - 1013 1.7e-15 56.5 36.1 2 6 3.7e-05 0.033 14.6 0.3 1 23 309 331 309 331 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZBTB4-201 - 1013 1.7e-15 56.5 36.1 3 6 0.0044 3.9 8.1 0.3 1 20 337 356 337 359 0.85 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZBTB4-201 - 1013 1.7e-15 56.5 36.1 4 6 0.00017 0.15 12.6 1.2 1 23 365 388 365 388 0.94 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZBTB4-201 - 1013 1.7e-15 56.5 36.1 5 6 4.1e-05 0.037 14.5 1.7 1 23 726 748 726 748 0.95 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZBTB4-201 - 1013 1.7e-15 56.5 36.1 6 6 3.5e-05 0.032 14.7 2.0 1 23 765 787 765 787 0.98 Zinc finger, C2H2 type BTB PF00651.31 111 ZBTB4-201 - 1013 1.5e-14 54.1 0.0 1 2 3e-13 2.7e-10 40.5 0.0 1 42 20 60 20 78 0.92 BTB/POZ domain BTB PF00651.31 111 ZBTB4-201 - 1013 1.5e-14 54.1 0.0 2 2 0.00032 0.29 11.4 0.0 53 100 125 176 99 180 0.87 BTB/POZ domain zf-C2H2_4 PF13894.6 24 ZBTB4-201 - 1013 2e-10 40.6 38.7 1 6 0.00024 0.21 12.5 1.0 2 21 235 254 234 256 0.91 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZBTB4-201 - 1013 2e-10 40.6 38.7 2 6 0.00048 0.43 11.6 0.5 1 23 309 331 309 332 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZBTB4-201 - 1013 2e-10 40.6 38.7 3 6 0.013 12 7.1 0.4 1 23 337 359 337 360 0.72 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZBTB4-201 - 1013 2e-10 40.6 38.7 4 6 0.0016 1.4 9.9 1.3 1 24 365 388 365 388 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZBTB4-201 - 1013 2e-10 40.6 38.7 5 6 9.6e-05 0.086 13.7 0.8 1 23 726 748 726 749 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZBTB4-201 - 1013 2e-10 40.6 38.7 6 6 0.0012 1.1 10.3 1.9 1 19 765 783 765 787 0.93 C2H2-type zinc finger zf-H2C2_2 PF13465.6 26 ZBTB4-201 - 1013 7.2e-09 35.7 26.8 1 6 0.0015 1.4 9.5 0.1 13 26 232 245 229 245 0.86 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZBTB4-201 - 1013 7.2e-09 35.7 26.8 2 6 2.4 2.2e+03 -0.6 0.0 15 26 309 320 300 320 0.89 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZBTB4-201 - 1013 7.2e-09 35.7 26.8 3 6 0.00056 0.5 10.9 1.4 1 25 323 347 323 347 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZBTB4-201 - 1013 7.2e-09 35.7 26.8 4 6 5.8e-06 0.0052 17.2 0.4 4 25 354 375 352 376 0.88 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZBTB4-201 - 1013 7.2e-09 35.7 26.8 5 6 0.15 1.3e+02 3.2 0.1 12 26 723 737 721 737 0.90 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZBTB4-201 - 1013 7.2e-09 35.7 26.8 6 6 0.0029 2.6 8.6 1.8 10 26 754 776 740 776 0.63 Zinc-finger double domain # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB4-201.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB4-201.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB4-201.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB4-201.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB4-201.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:57:46 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-C2H2 PF00096.26 23 ZBTB4-202 - 1013 1.7e-15 56.5 36.1 1 6 5.1e-05 0.046 14.2 0.2 2 19 235 252 234 254 0.94 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZBTB4-202 - 1013 1.7e-15 56.5 36.1 2 6 3.7e-05 0.033 14.6 0.3 1 23 309 331 309 331 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZBTB4-202 - 1013 1.7e-15 56.5 36.1 3 6 0.0044 3.9 8.1 0.3 1 20 337 356 337 359 0.85 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZBTB4-202 - 1013 1.7e-15 56.5 36.1 4 6 0.00017 0.15 12.6 1.2 1 23 365 388 365 388 0.94 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZBTB4-202 - 1013 1.7e-15 56.5 36.1 5 6 4.1e-05 0.037 14.5 1.7 1 23 726 748 726 748 0.95 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZBTB4-202 - 1013 1.7e-15 56.5 36.1 6 6 3.5e-05 0.032 14.7 2.0 1 23 765 787 765 787 0.98 Zinc finger, C2H2 type BTB PF00651.31 111 ZBTB4-202 - 1013 1.5e-14 54.1 0.0 1 2 3e-13 2.7e-10 40.5 0.0 1 42 20 60 20 78 0.92 BTB/POZ domain BTB PF00651.31 111 ZBTB4-202 - 1013 1.5e-14 54.1 0.0 2 2 0.00032 0.29 11.4 0.0 53 100 125 176 99 180 0.87 BTB/POZ domain zf-C2H2_4 PF13894.6 24 ZBTB4-202 - 1013 2e-10 40.6 38.7 1 6 0.00024 0.21 12.5 1.0 2 21 235 254 234 256 0.91 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZBTB4-202 - 1013 2e-10 40.6 38.7 2 6 0.00048 0.43 11.6 0.5 1 23 309 331 309 332 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZBTB4-202 - 1013 2e-10 40.6 38.7 3 6 0.013 12 7.1 0.4 1 23 337 359 337 360 0.72 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZBTB4-202 - 1013 2e-10 40.6 38.7 4 6 0.0016 1.4 9.9 1.3 1 24 365 388 365 388 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZBTB4-202 - 1013 2e-10 40.6 38.7 5 6 9.6e-05 0.086 13.7 0.8 1 23 726 748 726 749 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZBTB4-202 - 1013 2e-10 40.6 38.7 6 6 0.0012 1.1 10.3 1.9 1 19 765 783 765 787 0.93 C2H2-type zinc finger zf-H2C2_2 PF13465.6 26 ZBTB4-202 - 1013 7.2e-09 35.7 26.8 1 6 0.0015 1.4 9.5 0.1 13 26 232 245 229 245 0.86 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZBTB4-202 - 1013 7.2e-09 35.7 26.8 2 6 2.4 2.2e+03 -0.6 0.0 15 26 309 320 300 320 0.89 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZBTB4-202 - 1013 7.2e-09 35.7 26.8 3 6 0.00056 0.5 10.9 1.4 1 25 323 347 323 347 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZBTB4-202 - 1013 7.2e-09 35.7 26.8 4 6 5.8e-06 0.0052 17.2 0.4 4 25 354 375 352 376 0.88 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZBTB4-202 - 1013 7.2e-09 35.7 26.8 5 6 0.15 1.3e+02 3.2 0.1 12 26 723 737 721 737 0.90 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZBTB4-202 - 1013 7.2e-09 35.7 26.8 6 6 0.0029 2.6 8.6 1.8 10 26 754 776 740 776 0.63 Zinc-finger double domain # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB4-202.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB4-202.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB4-202.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB4-202.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB4-202.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:57:46 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- BTB PF00651.31 111 ZBTB42-201 - 422 4.3e-25 88.1 0.0 1 1 8.7e-28 6.5e-25 87.5 0.0 1 110 14 121 14 122 0.92 BTB/POZ domain zf-C2H2_4 PF13894.6 24 ZBTB42-201 - 422 9.9e-13 47.8 32.5 1 4 0.00039 0.29 12.1 2.9 2 23 295 316 294 317 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZBTB42-201 - 422 9.9e-13 47.8 32.5 2 4 8.2e-08 6.2e-05 23.5 2.5 2 23 335 356 334 357 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZBTB42-201 - 422 9.9e-13 47.8 32.5 3 4 0.00013 0.096 13.6 2.0 1 23 362 384 362 385 0.90 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZBTB42-201 - 422 9.9e-13 47.8 32.5 4 4 2.5e-05 0.019 15.8 2.3 1 24 390 413 390 413 0.94 C2H2-type zinc finger zf-H2C2_2 PF13465.6 26 ZBTB42-201 - 422 2.1e-12 46.9 28.4 1 5 0.37 2.7e+02 2.2 0.7 17 24 296 303 296 305 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZBTB42-201 - 422 2.1e-12 46.9 28.4 2 5 0.0013 0.97 10.0 0.8 16 25 335 344 312 345 0.65 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZBTB42-201 - 422 2.1e-12 46.9 28.4 3 5 3.3e-10 2.5e-07 30.8 1.4 2 24 349 371 348 373 0.97 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZBTB42-201 - 422 2.1e-12 46.9 28.4 4 5 1.5e-06 0.0011 19.2 1.2 1 25 376 400 376 401 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZBTB42-201 - 422 2.1e-12 46.9 28.4 5 5 1 7.5e+02 0.9 0.1 1 9 404 413 404 415 0.83 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZBTB42-201 - 422 2.1e-11 43.6 33.8 1 4 0.0016 1.2 9.7 1.8 2 23 295 316 294 316 0.94 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZBTB42-201 - 422 2.1e-11 43.6 33.8 2 4 1.7e-05 0.013 16.0 4.1 2 23 335 356 335 356 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZBTB42-201 - 422 2.1e-11 43.6 33.8 3 4 2e-06 0.0015 18.9 2.6 1 23 362 384 362 384 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZBTB42-201 - 422 2.1e-11 43.6 33.8 4 4 9.8e-06 0.0074 16.7 2.5 2 23 391 413 390 413 0.95 Zinc finger, C2H2 type # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB42-201.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB42-201.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB42-201.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB42-201.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB42-201.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:57:47 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- BTB PF00651.31 111 ZBTB42-202 - 422 4.3e-25 88.1 0.0 1 1 8.7e-28 6.5e-25 87.5 0.0 1 110 14 121 14 122 0.92 BTB/POZ domain zf-C2H2_4 PF13894.6 24 ZBTB42-202 - 422 9.9e-13 47.8 32.5 1 4 0.00039 0.29 12.1 2.9 2 23 295 316 294 317 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZBTB42-202 - 422 9.9e-13 47.8 32.5 2 4 8.2e-08 6.2e-05 23.5 2.5 2 23 335 356 334 357 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZBTB42-202 - 422 9.9e-13 47.8 32.5 3 4 0.00013 0.096 13.6 2.0 1 23 362 384 362 385 0.90 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZBTB42-202 - 422 9.9e-13 47.8 32.5 4 4 2.5e-05 0.019 15.8 2.3 1 24 390 413 390 413 0.94 C2H2-type zinc finger zf-H2C2_2 PF13465.6 26 ZBTB42-202 - 422 2.1e-12 46.9 28.4 1 5 0.37 2.7e+02 2.2 0.7 17 24 296 303 296 305 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZBTB42-202 - 422 2.1e-12 46.9 28.4 2 5 0.0013 0.97 10.0 0.8 16 25 335 344 312 345 0.65 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZBTB42-202 - 422 2.1e-12 46.9 28.4 3 5 3.3e-10 2.5e-07 30.8 1.4 2 24 349 371 348 373 0.97 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZBTB42-202 - 422 2.1e-12 46.9 28.4 4 5 1.5e-06 0.0011 19.2 1.2 1 25 376 400 376 401 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZBTB42-202 - 422 2.1e-12 46.9 28.4 5 5 1 7.5e+02 0.9 0.1 1 9 404 413 404 415 0.83 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZBTB42-202 - 422 2.1e-11 43.6 33.8 1 4 0.0016 1.2 9.7 1.8 2 23 295 316 294 316 0.94 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZBTB42-202 - 422 2.1e-11 43.6 33.8 2 4 1.7e-05 0.013 16.0 4.1 2 23 335 356 335 356 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZBTB42-202 - 422 2.1e-11 43.6 33.8 3 4 2e-06 0.0015 18.9 2.6 1 23 362 384 362 384 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZBTB42-202 - 422 2.1e-11 43.6 33.8 4 4 9.8e-06 0.0074 16.7 2.5 2 23 391 413 390 413 0.95 Zinc finger, C2H2 type # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB42-202.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB42-202.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB42-202.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB42-202.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB42-202.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:57:47 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- BTB PF00651.31 111 ZBTB43-201 - 467 9.6e-27 93.4 0.0 1 1 7.3e-30 1.6e-26 92.7 0.0 1 109 23 125 23 127 0.92 BTB/POZ domain zf-H2C2_2 PF13465.6 26 ZBTB43-201 - 467 4.7e-10 39.4 13.3 1 4 5.6 1.3e+04 -3.0 0.0 8 15 291 298 290 299 0.78 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZBTB43-201 - 467 4.7e-10 39.4 13.3 2 4 0.45 1e+03 0.4 0.3 19 26 376 383 370 383 0.87 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZBTB43-201 - 467 4.7e-10 39.4 13.3 3 4 1.8e-06 0.004 17.5 0.3 4 25 389 410 387 410 0.97 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZBTB43-201 - 467 4.7e-10 39.4 13.3 4 4 9.2e-10 2.1e-06 27.9 0.6 1 24 414 437 414 437 0.95 Zinc-finger double domain # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB43-201.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB43-201.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB43-201.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB43-201.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB43-201.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:57:48 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- BTB PF00651.31 111 ZBTB43-202 - 467 9.6e-27 93.4 0.0 1 1 7.3e-30 1.6e-26 92.7 0.0 1 109 23 125 23 127 0.92 BTB/POZ domain zf-H2C2_2 PF13465.6 26 ZBTB43-202 - 467 4.7e-10 39.4 13.3 1 4 5.6 1.3e+04 -3.0 0.0 8 15 291 298 290 299 0.78 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZBTB43-202 - 467 4.7e-10 39.4 13.3 2 4 0.45 1e+03 0.4 0.3 19 26 376 383 370 383 0.87 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZBTB43-202 - 467 4.7e-10 39.4 13.3 3 4 1.8e-06 0.004 17.5 0.3 4 25 389 410 387 410 0.97 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZBTB43-202 - 467 4.7e-10 39.4 13.3 4 4 9.2e-10 2.1e-06 27.9 0.6 1 24 414 437 414 437 0.95 Zinc-finger double domain # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB43-202.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB43-202.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB43-202.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB43-202.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB43-202.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:57:48 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- BTB PF00651.31 111 ZBTB43-203 - 467 9.6e-27 93.4 0.0 1 1 7.3e-30 1.6e-26 92.7 0.0 1 109 23 125 23 127 0.92 BTB/POZ domain zf-H2C2_2 PF13465.6 26 ZBTB43-203 - 467 4.7e-10 39.4 13.3 1 4 5.6 1.3e+04 -3.0 0.0 8 15 291 298 290 299 0.78 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZBTB43-203 - 467 4.7e-10 39.4 13.3 2 4 0.45 1e+03 0.4 0.3 19 26 376 383 370 383 0.87 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZBTB43-203 - 467 4.7e-10 39.4 13.3 3 4 1.8e-06 0.004 17.5 0.3 4 25 389 410 387 410 0.97 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZBTB43-203 - 467 4.7e-10 39.4 13.3 4 4 9.2e-10 2.1e-06 27.9 0.6 1 24 414 437 414 437 0.95 Zinc-finger double domain # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB43-203.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB43-203.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB43-203.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB43-203.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB43-203.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:57:48 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB43-204.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB43-204.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB43-204.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB43-204.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB43-204.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:57:49 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB43-205.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB43-205.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB43-205.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB43-205.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB43-205.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:57:49 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- BTB PF00651.31 111 ZBTB44-201 - 570 1.7e-29 102.3 0.6 1 1 4.4e-32 3.1e-29 101.5 0.6 1 110 21 127 21 128 0.96 BTB/POZ domain zf-C2H2 PF00096.26 23 ZBTB44-201 - 570 2.7e-19 68.5 24.4 1 4 1.9e-07 0.00013 22.2 0.4 1 23 399 421 399 421 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZBTB44-201 - 570 2.7e-19 68.5 24.4 2 4 3.4e-07 0.00023 21.4 2.7 1 23 427 449 427 449 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZBTB44-201 - 570 2.7e-19 68.5 24.4 3 4 2.3e-05 0.016 15.7 2.9 1 23 455 479 455 479 0.93 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZBTB44-201 - 570 2.7e-19 68.5 24.4 4 4 3.3e-07 0.00023 21.5 0.2 1 23 487 511 487 511 0.93 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZBTB44-201 - 570 2.6e-15 55.8 18.1 1 4 2.9e-06 0.002 18.8 0.4 1 23 399 421 399 422 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZBTB44-201 - 570 2.6e-15 55.8 18.1 2 4 4.8e-05 0.033 15.0 1.5 1 23 427 449 427 450 0.97 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZBTB44-201 - 570 2.6e-15 55.8 18.1 3 4 6.8e-06 0.0047 17.7 1.0 1 21 455 475 455 477 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZBTB44-201 - 570 2.6e-15 55.8 18.1 4 4 0.00018 0.12 13.3 0.0 1 22 487 508 487 509 0.94 C2H2-type zinc finger zf-H2C2_2 PF13465.6 26 ZBTB44-201 - 570 2.5e-13 49.8 23.0 1 4 0.00053 0.37 11.3 0.2 12 26 396 410 391 410 0.86 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZBTB44-201 - 570 2.5e-13 49.8 23.0 2 4 3.7e-09 2.5e-06 27.6 0.3 1 26 413 438 413 438 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZBTB44-201 - 570 2.5e-13 49.8 23.0 3 4 0.00088 0.61 10.6 2.2 1 26 441 466 441 466 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZBTB44-201 - 570 2.5e-13 49.8 23.0 4 4 0.00017 0.11 12.9 1.2 2 26 470 498 469 498 0.78 Zinc-finger double domain zf-met PF12874.7 25 ZBTB44-201 - 570 2e-10 40.7 18.0 1 5 6.1 4.2e+03 -1.6 0.0 6 18 198 210 198 210 0.91 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZBTB44-201 - 570 2e-10 40.7 18.0 2 5 2.6e-05 0.018 15.4 0.1 1 20 399 418 399 421 0.95 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZBTB44-201 - 570 2e-10 40.7 18.0 3 5 0.0011 0.75 10.3 0.1 1 19 427 445 427 446 0.97 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZBTB44-201 - 570 2e-10 40.7 18.0 4 5 0.0038 2.6 8.6 1.3 1 25 455 479 455 479 0.85 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZBTB44-201 - 570 2e-10 40.7 18.0 5 5 1.8e-05 0.012 15.9 0.3 1 23 487 509 487 511 0.92 Zinc-finger of C2H2 type zf-C2H2_6 PF13912.6 27 ZBTB44-201 - 570 5.8e-09 35.7 23.9 1 4 7.3e-06 0.005 16.8 0.1 2 21 399 418 399 422 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZBTB44-201 - 570 5.8e-09 35.7 23.9 2 4 0.00017 0.11 12.5 2.2 2 25 427 450 427 452 0.91 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZBTB44-201 - 570 5.8e-09 35.7 23.9 3 4 0.0008 0.55 10.3 2.4 2 14 455 467 454 475 0.92 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZBTB44-201 - 570 5.8e-09 35.7 23.9 4 4 0.0019 1.3 9.1 0.1 2 23 487 508 486 514 0.80 C2H2-type zinc finger zf-C2H2_11 PF16622.5 29 ZBTB44-201 - 570 9.3e-08 31.7 20.3 1 4 1.6e-05 0.011 15.5 0.3 5 26 399 420 398 421 0.95 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZBTB44-201 - 570 9.3e-08 31.7 20.3 2 4 1.9e-05 0.013 15.2 0.4 5 24 427 446 426 447 0.95 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZBTB44-201 - 570 9.3e-08 31.7 20.3 3 4 0.048 33 4.3 3.7 5 26 455 476 452 478 0.90 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZBTB44-201 - 570 9.3e-08 31.7 20.3 4 4 0.017 11 5.8 0.1 7 24 489 506 487 508 0.88 zinc-finger C2H2-type # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB44-201.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB44-201.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB44-201.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB44-201.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB44-201.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:57:49 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- BTB PF00651.31 111 ZBTB44-202 - 570 1.7e-29 102.3 0.6 1 1 4.4e-32 3.1e-29 101.5 0.6 1 110 21 127 21 128 0.96 BTB/POZ domain zf-C2H2 PF00096.26 23 ZBTB44-202 - 570 2.7e-19 68.5 24.4 1 4 1.9e-07 0.00013 22.2 0.4 1 23 399 421 399 421 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZBTB44-202 - 570 2.7e-19 68.5 24.4 2 4 3.4e-07 0.00023 21.4 2.7 1 23 427 449 427 449 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZBTB44-202 - 570 2.7e-19 68.5 24.4 3 4 2.3e-05 0.016 15.7 2.9 1 23 455 479 455 479 0.93 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZBTB44-202 - 570 2.7e-19 68.5 24.4 4 4 3.3e-07 0.00023 21.5 0.2 1 23 487 511 487 511 0.93 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZBTB44-202 - 570 2.6e-15 55.8 18.1 1 4 2.9e-06 0.002 18.8 0.4 1 23 399 421 399 422 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZBTB44-202 - 570 2.6e-15 55.8 18.1 2 4 4.8e-05 0.033 15.0 1.5 1 23 427 449 427 450 0.97 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZBTB44-202 - 570 2.6e-15 55.8 18.1 3 4 6.8e-06 0.0047 17.7 1.0 1 21 455 475 455 477 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZBTB44-202 - 570 2.6e-15 55.8 18.1 4 4 0.00018 0.12 13.3 0.0 1 22 487 508 487 509 0.94 C2H2-type zinc finger zf-H2C2_2 PF13465.6 26 ZBTB44-202 - 570 2.5e-13 49.8 23.0 1 4 0.00053 0.37 11.3 0.2 12 26 396 410 391 410 0.86 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZBTB44-202 - 570 2.5e-13 49.8 23.0 2 4 3.7e-09 2.5e-06 27.6 0.3 1 26 413 438 413 438 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZBTB44-202 - 570 2.5e-13 49.8 23.0 3 4 0.00088 0.61 10.6 2.2 1 26 441 466 441 466 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZBTB44-202 - 570 2.5e-13 49.8 23.0 4 4 0.00017 0.11 12.9 1.2 2 26 470 498 469 498 0.78 Zinc-finger double domain zf-met PF12874.7 25 ZBTB44-202 - 570 2e-10 40.7 18.0 1 5 6.1 4.2e+03 -1.6 0.0 6 18 198 210 198 210 0.91 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZBTB44-202 - 570 2e-10 40.7 18.0 2 5 2.6e-05 0.018 15.4 0.1 1 20 399 418 399 421 0.95 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZBTB44-202 - 570 2e-10 40.7 18.0 3 5 0.0011 0.75 10.3 0.1 1 19 427 445 427 446 0.97 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZBTB44-202 - 570 2e-10 40.7 18.0 4 5 0.0038 2.6 8.6 1.3 1 25 455 479 455 479 0.85 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZBTB44-202 - 570 2e-10 40.7 18.0 5 5 1.8e-05 0.012 15.9 0.3 1 23 487 509 487 511 0.92 Zinc-finger of C2H2 type zf-C2H2_6 PF13912.6 27 ZBTB44-202 - 570 5.8e-09 35.7 23.9 1 4 7.3e-06 0.005 16.8 0.1 2 21 399 418 399 422 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZBTB44-202 - 570 5.8e-09 35.7 23.9 2 4 0.00017 0.11 12.5 2.2 2 25 427 450 427 452 0.91 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZBTB44-202 - 570 5.8e-09 35.7 23.9 3 4 0.0008 0.55 10.3 2.4 2 14 455 467 454 475 0.92 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZBTB44-202 - 570 5.8e-09 35.7 23.9 4 4 0.0019 1.3 9.1 0.1 2 23 487 508 486 514 0.80 C2H2-type zinc finger zf-C2H2_11 PF16622.5 29 ZBTB44-202 - 570 9.3e-08 31.7 20.3 1 4 1.6e-05 0.011 15.5 0.3 5 26 399 420 398 421 0.95 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZBTB44-202 - 570 9.3e-08 31.7 20.3 2 4 1.9e-05 0.013 15.2 0.4 5 24 427 446 426 447 0.95 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZBTB44-202 - 570 9.3e-08 31.7 20.3 3 4 0.048 33 4.3 3.7 5 26 455 476 452 478 0.90 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZBTB44-202 - 570 9.3e-08 31.7 20.3 4 4 0.017 11 5.8 0.1 7 24 489 506 487 508 0.88 zinc-finger C2H2-type # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB44-202.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB44-202.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB44-202.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB44-202.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB44-202.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:57:50 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- BTB PF00651.31 111 ZBTB44-203 - 467 1.4e-29 102.5 0.6 1 1 2.6e-32 2.2e-29 101.9 0.6 1 110 21 127 21 128 0.96 BTB/POZ domain zf-C2H2 PF00096.26 23 ZBTB44-203 - 467 8.2e-11 41.7 8.9 1 2 1.2e-07 0.0001 22.5 0.4 1 23 399 421 399 421 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZBTB44-203 - 467 8.2e-11 41.7 8.9 2 2 2.2e-07 0.00018 21.7 2.7 1 23 427 449 427 449 0.98 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZBTB44-203 - 467 7.6e-08 32.6 7.0 1 2 1.9e-06 0.0016 19.1 0.4 1 23 399 421 399 422 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZBTB44-203 - 467 7.6e-08 32.6 7.0 2 2 3.1e-05 0.026 15.3 1.5 1 23 427 449 427 450 0.97 C2H2-type zinc finger zf-C2H2_11 PF16622.5 29 ZBTB44-203 - 467 1.6e-07 30.9 4.6 1 2 9.9e-06 0.0085 15.8 0.3 5 26 399 420 398 421 0.95 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZBTB44-203 - 467 1.6e-07 30.9 4.6 2 2 1.2e-05 0.011 15.5 0.4 5 24 427 446 426 447 0.95 zinc-finger C2H2-type zf-H2C2_2 PF13465.6 26 ZBTB44-203 - 467 2.8e-07 30.6 3.5 1 3 8.4 7.2e+03 -2.2 0.0 10 17 191 198 187 199 0.83 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZBTB44-203 - 467 2.8e-07 30.6 3.5 2 3 0.00034 0.29 11.6 0.2 12 26 396 410 391 410 0.86 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZBTB44-203 - 467 2.8e-07 30.6 3.5 3 3 2.3e-09 2e-06 28.0 0.3 1 26 413 438 413 438 0.96 Zinc-finger double domain zf-C2H2_6 PF13912.6 27 ZBTB44-203 - 467 7.5e-07 29.0 6.0 1 2 4.7e-06 0.004 17.1 0.1 2 21 399 418 399 422 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZBTB44-203 - 467 7.5e-07 29.0 6.0 2 2 0.00011 0.091 12.8 1.9 2 24 427 449 427 453 0.90 C2H2-type zinc finger # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB44-203.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB44-203.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB44-203.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB44-203.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB44-203.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:57:50 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-C2H2 PF00096.26 23 ZBTB44-204 - 106 2.3e-16 59.3 17.9 1 3 4.5e-08 2.3e-05 24.6 2.7 1 23 10 32 10 32 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZBTB44-204 - 106 2.3e-16 59.3 17.9 2 3 2.9e-06 0.0015 18.9 2.9 1 23 38 62 38 62 0.93 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZBTB44-204 - 106 2.3e-16 59.3 17.9 3 3 4.2e-08 2.1e-05 24.7 0.2 1 23 70 94 70 94 0.93 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZBTB44-204 - 106 4.8e-13 48.7 13.0 1 3 6.1e-06 0.0031 18.2 1.5 1 23 10 32 10 33 0.97 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZBTB44-204 - 106 4.8e-13 48.7 13.0 2 3 7.8e-07 0.0004 21.0 1.0 1 21 38 58 38 61 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZBTB44-204 - 106 4.8e-13 48.7 13.0 3 3 2.3e-05 0.012 16.4 0.0 1 22 70 91 70 92 0.94 C2H2-type zinc finger zf-H2C2_2 PF13465.6 26 ZBTB44-204 - 106 2.8e-10 40.1 17.8 1 3 8.2e-07 0.00042 20.6 0.1 8 26 3 21 1 21 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZBTB44-204 - 106 2.8e-10 40.1 17.8 2 3 0.00011 0.057 13.9 2.2 1 26 24 49 24 49 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZBTB44-204 - 106 2.8e-10 40.1 17.8 3 3 1.9e-05 0.01 16.3 1.2 2 26 53 81 52 81 0.79 Zinc-finger double domain zf-met PF12874.7 25 ZBTB44-204 - 106 9.4e-10 38.6 10.9 1 3 0.00016 0.082 13.3 0.1 1 19 10 28 10 29 0.97 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZBTB44-204 - 106 9.4e-10 38.6 10.9 2 3 0.00052 0.27 11.7 1.4 1 25 38 62 38 62 0.87 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZBTB44-204 - 106 9.4e-10 38.6 10.9 3 3 2.3e-06 0.0012 19.2 0.3 1 23 70 92 70 94 0.92 Zinc-finger of C2H2 type zf-C2H2_6 PF13912.6 27 ZBTB44-204 - 106 3.1e-08 33.4 16.2 1 3 2.2e-05 0.011 15.7 2.2 2 25 10 33 10 35 0.91 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZBTB44-204 - 106 3.1e-08 33.4 16.2 2 3 0.0002 0.1 12.6 3.0 2 14 38 50 37 58 0.92 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZBTB44-204 - 106 3.1e-08 33.4 16.2 3 3 0.00026 0.13 12.3 0.1 2 23 70 91 69 97 0.81 C2H2-type zinc finger # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB44-204.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB44-204.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB44-204.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB44-204.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB44-204.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:57:51 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- BTB PF00651.31 111 ZBTB44-205 - 453 1.3e-29 102.6 0.6 1 1 2.6e-32 2.1e-29 102.0 0.6 1 110 21 127 21 128 0.96 BTB/POZ domain zf-C2H2 PF00096.26 23 ZBTB44-205 - 453 7.9e-11 41.8 8.9 1 2 1.2e-07 9.9e-05 22.6 0.4 1 23 399 421 399 421 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZBTB44-205 - 453 7.9e-11 41.8 8.9 2 2 2.2e-07 0.00018 21.8 2.7 1 23 427 449 427 449 0.98 Zinc finger, C2H2 type zf-H2C2_2 PF13465.6 26 ZBTB44-205 - 453 6.2e-08 32.7 11.7 1 3 8.5 6.9e+03 -2.2 0.0 10 17 191 198 187 199 0.83 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZBTB44-205 - 453 6.2e-08 32.7 11.7 2 3 0.00035 0.28 11.7 0.2 12 26 396 410 391 410 0.86 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZBTB44-205 - 453 6.2e-08 32.7 11.7 3 3 2.4e-09 1.9e-06 28.0 0.3 1 26 413 438 413 438 0.96 Zinc-finger double domain zf-C2H2_4 PF13894.6 24 ZBTB44-205 - 453 7e-08 32.7 7.0 1 2 1.9e-06 0.0015 19.2 0.4 1 23 399 421 399 422 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZBTB44-205 - 453 7e-08 32.7 7.0 2 2 3.1e-05 0.025 15.4 1.5 1 23 427 449 427 450 0.97 C2H2-type zinc finger zf-C2H2_11 PF16622.5 29 ZBTB44-205 - 453 1.5e-07 31.0 4.6 1 2 1e-05 0.0082 15.9 0.3 5 26 399 420 398 421 0.95 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZBTB44-205 - 453 1.5e-07 31.0 4.6 2 2 1.2e-05 0.01 15.6 0.4 5 24 427 446 426 447 0.95 zinc-finger C2H2-type zf-C2H2_6 PF13912.6 27 ZBTB44-205 - 453 8.9e-07 28.8 5.9 1 2 4.7e-06 0.0038 17.2 0.1 2 21 399 418 399 422 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZBTB44-205 - 453 8.9e-07 28.8 5.9 2 2 0.00014 0.11 12.5 1.8 2 24 427 449 427 450 0.91 C2H2-type zinc finger # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB44-205.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB44-205.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB44-205.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB44-205.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB44-205.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:57:51 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- BTB PF00651.31 111 ZBTB44-206 - 616 1.9e-29 102.1 0.6 1 1 4.6e-32 3.5e-29 101.3 0.6 1 110 21 127 21 128 0.96 BTB/POZ domain zf-C2H2 PF00096.26 23 ZBTB44-206 - 616 4e-19 67.9 24.4 1 4 1.9e-07 0.00014 22.1 0.4 1 23 399 421 399 421 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZBTB44-206 - 616 4e-19 67.9 24.4 2 4 3.4e-07 0.00026 21.3 2.7 1 23 427 449 427 449 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZBTB44-206 - 616 4e-19 67.9 24.4 3 4 2.3e-05 0.017 15.6 2.9 1 23 455 479 455 479 0.93 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZBTB44-206 - 616 4e-19 67.9 24.4 4 4 3.3e-07 0.00025 21.3 0.2 1 23 487 511 487 511 0.93 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZBTB44-206 - 616 3.9e-15 55.3 18.1 1 4 3e-06 0.0022 18.7 0.4 1 23 399 421 399 422 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZBTB44-206 - 616 3.9e-15 55.3 18.1 2 4 4.9e-05 0.036 14.9 1.5 1 23 427 449 427 450 0.97 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZBTB44-206 - 616 3.9e-15 55.3 18.1 3 4 6.9e-06 0.0052 17.5 1.0 1 21 455 475 455 477 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZBTB44-206 - 616 3.9e-15 55.3 18.1 4 4 0.00018 0.13 13.1 0.0 1 22 487 508 487 509 0.94 C2H2-type zinc finger zf-H2C2_2 PF13465.6 26 ZBTB44-206 - 616 3.7e-13 49.3 23.0 1 4 0.00054 0.4 11.2 0.2 12 26 396 410 391 410 0.86 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZBTB44-206 - 616 3.7e-13 49.3 23.0 2 4 3.7e-09 2.8e-06 27.5 0.3 1 26 413 438 413 438 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZBTB44-206 - 616 3.7e-13 49.3 23.0 3 4 0.00089 0.67 10.5 2.2 1 26 441 466 441 466 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZBTB44-206 - 616 3.7e-13 49.3 23.0 4 4 0.00017 0.13 12.8 1.2 2 26 470 498 469 498 0.78 Zinc-finger double domain zf-met PF12874.7 25 ZBTB44-206 - 616 3.1e-10 40.1 18.0 1 5 6.1 4.6e+03 -1.8 0.0 6 18 198 210 198 210 0.91 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZBTB44-206 - 616 3.1e-10 40.1 18.0 2 5 2.7e-05 0.02 15.3 0.1 1 20 399 418 399 421 0.95 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZBTB44-206 - 616 3.1e-10 40.1 18.0 3 5 0.0011 0.82 10.1 0.1 1 19 427 445 427 446 0.97 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZBTB44-206 - 616 3.1e-10 40.1 18.0 4 5 0.0038 2.8 8.4 1.3 1 25 455 479 455 479 0.85 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZBTB44-206 - 616 3.1e-10 40.1 18.0 5 5 1.8e-05 0.013 15.8 0.3 1 23 487 509 487 511 0.92 Zinc-finger of C2H2 type zf-C2H2_6 PF13912.6 27 ZBTB44-206 - 616 8.5e-09 35.2 23.9 1 4 7.4e-06 0.0055 16.7 0.1 2 21 399 418 399 422 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZBTB44-206 - 616 8.5e-09 35.2 23.9 2 4 0.00017 0.13 12.3 2.2 2 25 427 450 427 452 0.91 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZBTB44-206 - 616 8.5e-09 35.2 23.9 3 4 0.00081 0.6 10.2 2.4 2 14 455 467 454 475 0.92 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZBTB44-206 - 616 8.5e-09 35.2 23.9 4 4 0.0019 1.5 9.0 0.1 2 23 487 508 486 514 0.80 C2H2-type zinc finger zf-C2H2_11 PF16622.5 29 ZBTB44-206 - 616 1.3e-07 31.2 20.3 1 4 1.6e-05 0.012 15.4 0.3 5 26 399 420 398 421 0.95 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZBTB44-206 - 616 1.3e-07 31.2 20.3 2 4 1.9e-05 0.015 15.1 0.4 5 24 427 446 426 447 0.95 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZBTB44-206 - 616 1.3e-07 31.2 20.3 3 4 0.049 36 4.2 3.7 5 26 455 476 452 478 0.90 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZBTB44-206 - 616 1.3e-07 31.2 20.3 4 4 0.017 13 5.7 0.1 7 24 489 506 487 508 0.88 zinc-finger C2H2-type # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB44-206.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB44-206.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB44-206.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB44-206.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB44-206.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:57:51 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB44-207.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB44-207.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB44-207.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB44-207.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB44-207.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:57:52 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- BTB PF00651.31 111 ZBTB44-208 - 372 9.7e-30 103.1 0.6 1 1 2.4e-33 1.4e-29 102.5 0.6 1 110 21 127 21 128 0.96 BTB/POZ domain # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB44-208.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB44-208.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB44-208.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB44-208.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB44-208.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:57:52 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-C2H2 PF00096.26 23 ZBTB44-209 - 285 3.9e-11 42.8 8.9 1 2 6.2e-08 5.5e-05 23.4 0.4 1 23 210 232 210 232 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZBTB44-209 - 285 3.9e-11 42.8 8.9 2 2 1.1e-07 9.9e-05 22.6 2.7 1 23 238 260 238 260 0.98 Zinc finger, C2H2 type zf-H2C2_2 PF13465.6 26 ZBTB44-209 - 285 3.1e-08 33.7 12.5 1 4 8.5 7.6e+03 -2.3 0.1 11 17 3 9 2 10 0.86 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZBTB44-209 - 285 3.1e-08 33.7 12.5 2 4 0.00018 0.16 12.4 0.2 12 26 207 221 202 221 0.86 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZBTB44-209 - 285 3.1e-08 33.7 12.5 3 4 1.2e-09 1.1e-06 28.8 0.3 1 26 224 249 224 249 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZBTB44-209 - 285 3.1e-08 33.7 12.5 4 4 3.3 2.9e+03 -1.0 0.2 1 12 252 263 252 264 0.83 Zinc-finger double domain zf-C2H2_4 PF13894.6 24 ZBTB44-209 - 285 4.1e-08 33.4 7.0 1 2 9.4e-07 0.00084 20.0 0.4 1 23 210 232 210 233 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZBTB44-209 - 285 4.1e-08 33.4 7.0 2 2 1.6e-05 0.014 16.2 1.5 1 23 238 260 238 261 0.97 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZBTB44-209 - 285 2.3e-07 30.6 5.1 1 2 2.4e-06 0.0022 18.0 0.1 2 21 210 229 210 233 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZBTB44-209 - 285 2.3e-07 30.6 5.1 2 2 4.4e-05 0.04 13.9 1.3 2 24 238 260 238 262 0.91 C2H2-type zinc finger # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB44-209.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB44-209.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB44-209.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB44-209.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB44-209.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:57:52 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- BTB PF00651.31 111 ZBTB44-210 - 474 1.4e-29 102.5 0.6 1 1 2.8e-32 2.3e-29 101.9 0.6 1 110 21 127 21 128 0.96 BTB/POZ domain zf-C2H2 PF00096.26 23 ZBTB44-210 - 474 9.1e-11 41.6 8.9 1 2 1.3e-07 0.0001 22.5 0.4 1 23 399 421 399 421 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZBTB44-210 - 474 9.1e-11 41.6 8.9 2 2 2.3e-07 0.00019 21.7 2.7 1 23 427 449 427 449 0.98 Zinc finger, C2H2 type zf-H2C2_2 PF13465.6 26 ZBTB44-210 - 474 2.5e-08 33.9 10.7 1 4 8.9 7.3e+03 -2.3 0.0 10 17 191 198 187 199 0.83 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZBTB44-210 - 474 2.5e-08 33.9 10.7 2 4 0.00037 0.3 11.6 0.2 12 26 396 410 391 410 0.86 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZBTB44-210 - 474 2.5e-08 33.9 10.7 3 4 2.5e-09 2e-06 27.9 0.3 1 26 413 438 413 438 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZBTB44-210 - 474 2.5e-08 33.9 10.7 4 4 7.1 5.8e+03 -2.0 0.3 1 11 441 451 441 452 0.82 Zinc-finger double domain zf-C2H2_4 PF13894.6 24 ZBTB44-210 - 474 8.2e-08 32.5 7.0 1 2 2e-06 0.0016 19.1 0.4 1 23 399 421 399 422 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZBTB44-210 - 474 8.2e-08 32.5 7.0 2 2 3.3e-05 0.027 15.3 1.5 1 23 427 449 427 450 0.97 C2H2-type zinc finger zf-C2H2_11 PF16622.5 29 ZBTB44-210 - 474 1.7e-07 30.8 4.6 1 2 1.1e-05 0.0086 15.8 0.3 5 26 399 420 398 421 0.95 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZBTB44-210 - 474 1.7e-07 30.8 4.6 2 2 1.3e-05 0.011 15.5 0.4 5 24 427 446 426 447 0.95 zinc-finger C2H2-type zf-C2H2_6 PF13912.6 27 ZBTB44-210 - 474 5.3e-07 29.5 5.1 1 2 5e-06 0.0041 17.1 0.1 2 21 399 418 399 422 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZBTB44-210 - 474 5.3e-07 29.5 5.1 2 2 9.2e-05 0.075 13.1 1.3 2 24 427 449 427 451 0.91 C2H2-type zinc finger # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB44-210.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB44-210.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB44-210.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB44-210.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB44-210.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:57:53 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- BTB PF00651.31 111 ZBTB46-201 - 589 1.8e-25 89.3 1.3 1 1 2e-28 2.8e-25 88.7 1.3 1 109 21 127 21 129 0.91 BTB/POZ domain zf-H2C2_2 PF13465.6 26 ZBTB46-201 - 589 1.3e-13 50.7 18.1 1 3 0.011 15 6.2 0.7 13 22 416 425 410 427 0.84 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZBTB46-201 - 589 1.3e-13 50.7 18.1 2 3 1.1e-12 1.5e-09 37.8 1.0 2 26 433 457 432 457 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZBTB46-201 - 589 1.3e-13 50.7 18.1 3 3 1.4e-05 0.019 15.4 3.1 2 24 461 483 458 483 0.85 Zinc-finger double domain zf-H2C2_5 PF13909.6 26 ZBTB46-201 - 589 1.2e-08 34.5 3.7 1 2 8.8e-12 1.2e-08 34.5 3.7 1 26 418 442 418 442 0.98 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 ZBTB46-201 - 589 1.2e-08 34.5 3.7 2 2 0.58 8e+02 -0.1 3.7 14 26 459 470 456 470 0.80 C2H2-type zinc-finger domain zf-C2H2_4 PF13894.6 24 ZBTB46-201 - 589 1.5e-07 31.7 21.1 1 4 4.6 6.3e+03 -1.4 0.0 3 19 31 45 30 49 0.57 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZBTB46-201 - 589 1.5e-07 31.7 21.1 2 4 4.6e-05 0.063 14.1 5.6 1 23 418 440 418 441 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZBTB46-201 - 589 1.5e-07 31.7 21.1 3 4 5.8e-06 0.0081 16.9 1.7 1 23 446 468 446 469 0.91 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZBTB46-201 - 589 1.5e-07 31.7 21.1 4 4 0.0033 4.6 8.3 0.1 1 16 474 489 474 493 0.81 C2H2-type zinc finger # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB46-201.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB46-201.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB46-201.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB46-201.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB46-201.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:57:53 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- BTB PF00651.31 111 ZBTB46-202 - 589 1.8e-25 89.3 1.3 1 1 2e-28 2.8e-25 88.7 1.3 1 109 21 127 21 129 0.91 BTB/POZ domain zf-H2C2_2 PF13465.6 26 ZBTB46-202 - 589 1.3e-13 50.7 18.1 1 3 0.011 15 6.2 0.7 13 22 416 425 410 427 0.84 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZBTB46-202 - 589 1.3e-13 50.7 18.1 2 3 1.1e-12 1.5e-09 37.8 1.0 2 26 433 457 432 457 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZBTB46-202 - 589 1.3e-13 50.7 18.1 3 3 1.4e-05 0.019 15.4 3.1 2 24 461 483 458 483 0.85 Zinc-finger double domain zf-H2C2_5 PF13909.6 26 ZBTB46-202 - 589 1.2e-08 34.5 3.7 1 2 8.8e-12 1.2e-08 34.5 3.7 1 26 418 442 418 442 0.98 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 ZBTB46-202 - 589 1.2e-08 34.5 3.7 2 2 0.58 8e+02 -0.1 3.7 14 26 459 470 456 470 0.80 C2H2-type zinc-finger domain zf-C2H2_4 PF13894.6 24 ZBTB46-202 - 589 1.5e-07 31.7 21.1 1 4 4.6 6.3e+03 -1.4 0.0 3 19 31 45 30 49 0.57 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZBTB46-202 - 589 1.5e-07 31.7 21.1 2 4 4.6e-05 0.063 14.1 5.6 1 23 418 440 418 441 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZBTB46-202 - 589 1.5e-07 31.7 21.1 3 4 5.8e-06 0.0081 16.9 1.7 1 23 446 468 446 469 0.91 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZBTB46-202 - 589 1.5e-07 31.7 21.1 4 4 0.0033 4.6 8.3 0.1 1 16 474 489 474 493 0.81 C2H2-type zinc finger # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB46-202.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB46-202.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB46-202.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB46-202.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB46-202.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:57:53 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- BTB PF00651.31 111 ZBTB46-203 - 589 1.8e-25 89.3 1.3 1 1 2e-28 2.8e-25 88.7 1.3 1 109 21 127 21 129 0.91 BTB/POZ domain zf-H2C2_2 PF13465.6 26 ZBTB46-203 - 589 1.3e-13 50.7 18.1 1 3 0.011 15 6.2 0.7 13 22 416 425 410 427 0.84 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZBTB46-203 - 589 1.3e-13 50.7 18.1 2 3 1.1e-12 1.5e-09 37.8 1.0 2 26 433 457 432 457 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZBTB46-203 - 589 1.3e-13 50.7 18.1 3 3 1.4e-05 0.019 15.4 3.1 2 24 461 483 458 483 0.85 Zinc-finger double domain zf-H2C2_5 PF13909.6 26 ZBTB46-203 - 589 1.2e-08 34.5 3.7 1 2 8.8e-12 1.2e-08 34.5 3.7 1 26 418 442 418 442 0.98 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 ZBTB46-203 - 589 1.2e-08 34.5 3.7 2 2 0.58 8e+02 -0.1 3.7 14 26 459 470 456 470 0.80 C2H2-type zinc-finger domain zf-C2H2_4 PF13894.6 24 ZBTB46-203 - 589 1.5e-07 31.7 21.1 1 4 4.6 6.3e+03 -1.4 0.0 3 19 31 45 30 49 0.57 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZBTB46-203 - 589 1.5e-07 31.7 21.1 2 4 4.6e-05 0.063 14.1 5.6 1 23 418 440 418 441 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZBTB46-203 - 589 1.5e-07 31.7 21.1 3 4 5.8e-06 0.0081 16.9 1.7 1 23 446 468 446 469 0.91 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZBTB46-203 - 589 1.5e-07 31.7 21.1 4 4 0.0033 4.6 8.3 0.1 1 16 474 489 474 493 0.81 C2H2-type zinc finger # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB46-203.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB46-203.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB46-203.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB46-203.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB46-203.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:57:54 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB46-204.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB46-204.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB46-204.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB46-204.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB46-204.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:57:54 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB46-205.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB46-205.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB46-205.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB46-205.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB46-205.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:57:54 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB48-201.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB48-201.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB48-201.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB48-201.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB48-201.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:57:55 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZBTB48-202 - 688 5.7e-48 159.3 80.7 1 12 0.00052 0.55 10.8 0.2 14 25 290 301 283 302 0.88 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZBTB48-202 - 688 5.7e-48 159.3 80.7 2 12 1.4e-09 1.4e-06 28.4 5.8 2 24 306 328 305 330 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZBTB48-202 - 688 5.7e-48 159.3 80.7 3 12 0.071 75 4.0 0.2 12 25 347 360 336 361 0.84 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZBTB48-202 - 688 5.7e-48 159.3 80.7 4 12 0.00019 0.2 12.2 0.0 2 24 365 387 364 387 0.89 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZBTB48-202 - 688 5.7e-48 159.3 80.7 5 12 0.00048 0.51 10.9 0.2 1 25 392 417 392 418 0.87 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZBTB48-202 - 688 5.7e-48 159.3 80.7 6 12 2.4e-05 0.025 15.0 0.4 2 22 422 443 421 447 0.85 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZBTB48-202 - 688 5.7e-48 159.3 80.7 7 12 8.5e-08 9e-05 22.7 1.6 1 25 450 475 450 476 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZBTB48-202 - 688 5.7e-48 159.3 80.7 8 12 2.7e-12 2.9e-09 36.9 1.9 1 25 479 503 479 504 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZBTB48-202 - 688 5.7e-48 159.3 80.7 9 12 3.3e-09 3.5e-06 27.2 0.9 1 25 507 531 507 532 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZBTB48-202 - 688 5.7e-48 159.3 80.7 10 12 5.9e-05 0.063 13.7 0.9 2 25 536 560 536 560 0.83 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZBTB48-202 - 688 5.7e-48 159.3 80.7 11 12 1.9e-08 2e-05 24.8 1.5 2 26 565 589 564 589 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZBTB48-202 - 688 5.7e-48 159.3 80.7 12 12 0.55 5.8e+02 1.2 0.9 1 9 592 600 592 607 0.83 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZBTB48-202 - 688 2e-32 109.8 85.6 1 11 0.00016 0.17 12.4 3.4 2 23 292 313 291 313 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZBTB48-202 - 688 2e-32 109.8 85.6 2 11 9.7e-06 0.01 16.2 0.9 1 20 319 338 319 340 0.93 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZBTB48-202 - 688 2e-32 109.8 85.6 3 11 7e-07 0.00074 19.8 1.1 1 23 350 372 350 372 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZBTB48-202 - 688 2e-32 109.8 85.6 4 11 0.0024 2.5 8.7 0.5 6 23 383 401 381 401 0.95 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZBTB48-202 - 688 2e-32 109.8 85.6 5 11 2.2 2.3e+03 -0.6 0.4 5 21 411 427 410 430 0.80 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZBTB48-202 - 688 2e-32 109.8 85.6 6 11 0.00058 0.61 10.7 0.4 1 23 436 459 436 459 0.95 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZBTB48-202 - 688 2e-32 109.8 85.6 7 11 5.1e-06 0.0054 17.1 3.6 1 23 465 487 465 487 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZBTB48-202 - 688 2e-32 109.8 85.6 8 11 7e-08 7.4e-05 23.0 3.3 1 23 493 515 493 515 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZBTB48-202 - 688 2e-32 109.8 85.6 9 11 0.0017 1.8 9.2 0.4 1 23 521 544 521 544 0.95 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZBTB48-202 - 688 2e-32 109.8 85.6 10 11 9e-07 0.00095 19.5 1.3 2 23 551 572 550 572 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZBTB48-202 - 688 2e-32 109.8 85.6 11 11 7.8e-09 8.2e-06 26.0 1.9 1 23 578 600 578 600 0.97 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZBTB48-202 - 688 1e-27 94.4 82.6 1 11 0.0026 2.7 9.1 2.7 2 22 292 312 291 314 0.86 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZBTB48-202 - 688 1e-27 94.4 82.6 2 11 0.00031 0.33 11.9 1.0 1 21 319 339 319 340 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZBTB48-202 - 688 1e-27 94.4 82.6 3 11 3.6e-06 0.0038 17.9 1.0 1 23 350 372 350 373 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZBTB48-202 - 688 1e-27 94.4 82.6 4 11 0.0004 0.43 11.6 0.3 4 24 381 401 378 401 0.90 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZBTB48-202 - 688 1e-27 94.4 82.6 5 11 0.34 3.6e+02 2.5 0.7 5 24 411 430 407 430 0.87 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZBTB48-202 - 688 1e-27 94.4 82.6 6 11 0.00027 0.29 12.1 0.5 1 24 436 459 436 459 0.97 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZBTB48-202 - 688 1e-27 94.4 82.6 7 11 0.0011 1.1 10.2 2.9 1 23 465 487 465 488 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZBTB48-202 - 688 1e-27 94.4 82.6 8 11 1.8e-05 0.019 15.7 2.0 1 23 493 515 493 516 0.90 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZBTB48-202 - 688 1e-27 94.4 82.6 9 11 3.9e-06 0.0041 17.8 0.6 1 24 521 544 521 544 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZBTB48-202 - 688 1e-27 94.4 82.6 10 11 1e-06 0.0011 19.6 1.5 2 23 551 572 550 573 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZBTB48-202 - 688 1e-27 94.4 82.6 11 11 3.1e-06 0.0032 18.2 1.1 1 23 578 600 578 601 0.95 C2H2-type zinc finger BTB PF00651.31 111 ZBTB48-202 - 688 3.1e-22 78.9 0.0 1 1 4.9e-25 5.1e-22 78.2 0.0 1 107 16 115 16 119 0.94 BTB/POZ domain zf-met PF12874.7 25 ZBTB48-202 - 688 3.4e-07 30.4 49.7 1 9 0.038 40 4.8 1.1 2 20 292 310 291 313 0.90 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZBTB48-202 - 688 3.4e-07 30.4 49.7 2 9 0.00048 0.51 10.8 0.2 1 23 350 372 350 373 0.94 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZBTB48-202 - 688 3.4e-07 30.4 49.7 3 9 1.9 2e+03 -0.6 0.7 6 20 383 397 381 397 0.88 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZBTB48-202 - 688 3.4e-07 30.4 49.7 4 9 0.1 1.1e+02 3.4 0.4 1 23 436 458 436 459 0.90 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZBTB48-202 - 688 3.4e-07 30.4 49.7 5 9 0.13 1.3e+02 3.1 2.1 3 22 467 486 465 488 0.89 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZBTB48-202 - 688 3.4e-07 30.4 49.7 6 9 8.6e-05 0.091 13.2 0.6 1 21 493 513 493 516 0.91 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZBTB48-202 - 688 3.4e-07 30.4 49.7 7 9 0.07 74 3.9 0.1 1 23 521 543 521 544 0.89 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZBTB48-202 - 688 3.4e-07 30.4 49.7 8 9 0.00038 0.4 11.1 0.1 2 20 551 569 550 570 0.92 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZBTB48-202 - 688 3.4e-07 30.4 49.7 9 9 0.00062 0.66 10.5 0.4 1 21 578 598 578 600 0.93 Zinc-finger of C2H2 type zf-C2H2_jaz PF12171.8 27 ZBTB48-202 - 688 3.9e-07 30.2 45.6 1 10 0.0084 8.8 6.7 1.2 3 20 292 309 290 313 0.90 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZBTB48-202 - 688 3.9e-07 30.2 45.6 2 10 0.89 9.4e+02 0.3 0.8 2 17 319 335 318 337 0.87 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZBTB48-202 - 688 3.9e-07 30.2 45.6 3 10 0.0016 1.7 9.0 0.0 2 24 350 372 349 372 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZBTB48-202 - 688 3.9e-07 30.2 45.6 4 10 1.4 1.5e+03 -0.4 0.0 6 21 411 426 410 427 0.90 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZBTB48-202 - 688 3.9e-07 30.2 45.6 5 10 0.69 7.3e+02 0.6 0.0 2 22 436 456 435 456 0.88 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZBTB48-202 - 688 3.9e-07 30.2 45.6 6 10 2.4 2.5e+03 -1.1 0.8 2 24 465 487 464 487 0.80 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZBTB48-202 - 688 3.9e-07 30.2 45.6 7 10 1.5e-05 0.016 15.5 0.3 2 23 493 514 492 515 0.90 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZBTB48-202 - 688 3.9e-07 30.2 45.6 8 10 3.6 3.8e+03 -1.7 0.2 2 8 521 527 520 532 0.85 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZBTB48-202 - 688 3.9e-07 30.2 45.6 9 10 2.3e-06 0.0024 18.1 0.1 2 22 550 570 549 572 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZBTB48-202 - 688 3.9e-07 30.2 45.6 10 10 0.0071 7.5 7.0 0.5 1 21 577 597 577 598 0.95 Zinc-finger double-stranded RNA-binding # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB48-202.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB48-202.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB48-202.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB48-202.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB48-202.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:57:55 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB48-203.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB48-203.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB48-203.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB48-203.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB48-203.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:57:56 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB48-204.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB48-204.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB48-204.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB48-204.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB48-204.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:57:56 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-C2H2 PF00096.26 23 ZBTB48-205 - 138 1.3e-07 31.7 6.0 1 2 0.036 59 4.4 0.1 14 23 13 22 10 22 0.91 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZBTB48-205 - 138 1.3e-07 31.7 6.0 2 2 6.1e-10 1e-06 28.9 1.9 1 23 28 50 28 50 0.97 Zinc finger, C2H2 type # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB48-205.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB48-205.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB48-205.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB48-205.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB48-205.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:57:56 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZBTB48-206 - 326 7.7e-42 139.9 56.6 1 9 0.00013 0.081 13.4 0.0 2 24 3 25 2 25 0.89 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZBTB48-206 - 326 7.7e-42 139.9 56.6 2 9 0.00032 0.2 12.1 0.2 1 25 30 55 30 56 0.87 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZBTB48-206 - 326 7.7e-42 139.9 56.6 3 9 1.6e-05 0.01 16.2 0.4 2 22 60 81 59 85 0.85 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZBTB48-206 - 326 7.7e-42 139.9 56.6 4 9 5.6e-08 3.6e-05 24.0 1.6 1 25 88 113 88 114 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZBTB48-206 - 326 7.7e-42 139.9 56.6 5 9 1.8e-12 1.2e-09 38.2 1.9 1 25 117 141 117 142 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZBTB48-206 - 326 7.7e-42 139.9 56.6 6 9 2.2e-09 1.4e-06 28.4 0.9 1 25 145 169 145 170 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZBTB48-206 - 326 7.7e-42 139.9 56.6 7 9 3.9e-05 0.025 15.0 0.9 2 25 174 198 174 198 0.83 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZBTB48-206 - 326 7.7e-42 139.9 56.6 8 9 1.3e-08 8.1e-06 26.0 1.5 2 26 203 227 202 227 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZBTB48-206 - 326 7.7e-42 139.9 56.6 9 9 0.39 2.5e+02 2.4 0.9 1 9 230 238 230 245 0.83 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZBTB48-206 - 326 3.9e-24 83.7 65.0 1 9 2.2 1.4e+03 0.1 0.5 15 23 2 10 1 10 0.88 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZBTB48-206 - 326 3.9e-24 83.7 65.0 2 9 0.0016 1 9.9 0.5 6 23 21 39 19 39 0.95 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZBTB48-206 - 326 3.9e-24 83.7 65.0 3 9 1.5 9.7e+02 0.6 0.4 5 21 49 65 48 68 0.80 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZBTB48-206 - 326 3.9e-24 83.7 65.0 4 9 0.00038 0.25 11.9 0.4 1 23 74 97 74 97 0.95 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZBTB48-206 - 326 3.9e-24 83.7 65.0 5 9 3.4e-06 0.0022 18.4 3.6 1 23 103 125 103 125 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZBTB48-206 - 326 3.9e-24 83.7 65.0 6 9 4.7e-08 3e-05 24.2 3.3 1 23 131 153 131 153 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZBTB48-206 - 326 3.9e-24 83.7 65.0 7 9 0.0011 0.72 10.4 0.4 1 23 159 182 159 182 0.95 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZBTB48-206 - 326 3.9e-24 83.7 65.0 8 9 6e-07 0.00039 20.7 1.3 2 23 189 210 188 210 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZBTB48-206 - 326 3.9e-24 83.7 65.0 9 9 5.2e-09 3.3e-06 27.2 1.9 1 23 216 238 216 238 0.97 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZBTB48-206 - 326 1.5e-22 78.3 61.7 1 9 3.1 2e+03 0.1 0.3 15 23 2 10 1 11 0.86 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZBTB48-206 - 326 1.5e-22 78.3 61.7 2 9 0.00027 0.17 12.8 0.3 4 24 19 39 16 39 0.90 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZBTB48-206 - 326 1.5e-22 78.3 61.7 3 9 0.23 1.4e+02 3.7 0.7 5 24 49 68 45 68 0.87 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZBTB48-206 - 326 1.5e-22 78.3 61.7 4 9 0.00018 0.11 13.3 0.5 1 24 74 97 74 97 0.97 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZBTB48-206 - 326 1.5e-22 78.3 61.7 5 9 0.00071 0.46 11.5 2.9 1 23 103 125 103 126 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZBTB48-206 - 326 1.5e-22 78.3 61.7 6 9 1.2e-05 0.0078 17.0 2.0 1 23 131 153 131 154 0.90 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZBTB48-206 - 326 1.5e-22 78.3 61.7 7 9 2.6e-06 0.0016 19.1 0.6 1 24 159 182 159 182 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZBTB48-206 - 326 1.5e-22 78.3 61.7 8 9 6.8e-07 0.00044 20.9 1.5 2 23 189 210 188 211 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZBTB48-206 - 326 1.5e-22 78.3 61.7 9 9 2e-06 0.0013 19.4 1.1 1 23 216 238 216 239 0.95 C2H2-type zinc finger zf-met PF12874.7 25 ZBTB48-206 - 326 6.6e-08 32.7 35.8 1 7 0.99 6.3e+02 1.0 0.4 6 20 21 35 19 36 0.89 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZBTB48-206 - 326 6.6e-08 32.7 35.8 2 7 0.069 44 4.7 0.4 1 23 74 96 74 97 0.90 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZBTB48-206 - 326 6.6e-08 32.7 35.8 3 7 0.085 55 4.4 2.1 3 22 105 124 103 126 0.89 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZBTB48-206 - 326 6.6e-08 32.7 35.8 4 7 5.8e-05 0.037 14.4 0.6 1 21 131 151 131 154 0.91 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZBTB48-206 - 326 6.6e-08 32.7 35.8 5 7 0.047 30 5.2 0.1 1 23 159 181 159 182 0.89 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZBTB48-206 - 326 6.6e-08 32.7 35.8 6 7 0.00026 0.17 12.3 0.1 2 20 189 207 188 208 0.92 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZBTB48-206 - 326 6.6e-08 32.7 35.8 7 7 0.00042 0.27 11.7 0.4 1 21 216 236 216 238 0.93 Zinc-finger of C2H2 type zf-C2H2_jaz PF12171.8 27 ZBTB48-206 - 326 1.5e-07 31.5 28.8 1 7 0.98 6.3e+02 0.8 0.0 6 21 49 64 48 65 0.91 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZBTB48-206 - 326 1.5e-07 31.5 28.8 2 7 0.47 3e+02 1.9 0.0 2 22 74 94 73 94 0.88 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZBTB48-206 - 326 1.5e-07 31.5 28.8 3 7 3.9 2.5e+03 -1.1 2.1 2 24 103 125 102 125 0.81 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZBTB48-206 - 326 1.5e-07 31.5 28.8 4 7 1e-05 0.0064 16.8 0.3 2 24 131 153 130 153 0.90 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZBTB48-206 - 326 1.5e-07 31.5 28.8 5 7 2.3 1.5e+03 -0.4 0.1 2 8 159 165 158 172 0.86 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZBTB48-206 - 326 1.5e-07 31.5 28.8 6 7 1.5e-06 0.00099 19.3 0.1 2 22 188 208 187 210 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZBTB48-206 - 326 1.5e-07 31.5 28.8 7 7 0.0048 3.1 8.2 0.5 1 21 215 235 215 236 0.95 Zinc-finger double-stranded RNA-binding zf-H2C2_5 PF13909.6 26 ZBTB48-206 - 326 2e-07 30.6 38.5 1 8 6.5 4.2e+03 -2.4 0.2 16 26 3 12 2 12 0.79 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 ZBTB48-206 - 326 2e-07 30.6 38.5 2 8 0.18 1.2e+02 2.6 0.1 11 24 26 39 20 40 0.87 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 ZBTB48-206 - 326 2e-07 30.6 38.5 3 8 0.00017 0.11 12.3 0.2 3 25 76 98 74 99 0.95 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 ZBTB48-206 - 326 2e-07 30.6 38.5 4 8 3.1e-06 0.002 17.8 0.6 3 26 105 127 104 127 0.98 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 ZBTB48-206 - 326 2e-07 30.6 38.5 5 8 0.18 1.1e+02 2.6 0.4 14 26 144 155 141 155 0.87 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 ZBTB48-206 - 326 2e-07 30.6 38.5 6 8 0.13 84 3.0 0.1 1 22 159 180 159 183 0.83 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 ZBTB48-206 - 326 2e-07 30.6 38.5 7 8 0.99 6.3e+02 0.2 0.7 15 26 202 212 201 212 0.85 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 ZBTB48-206 - 326 2e-07 30.6 38.5 8 8 9.4e-06 0.006 16.3 0.6 2 25 217 239 216 240 0.93 C2H2-type zinc-finger domain zf-C2H2_11 PF16622.5 29 ZBTB48-206 - 326 4.9e-07 29.4 4.9 1 7 3.3 2.1e+03 -1.4 0.3 10 23 50 63 49 68 0.75 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZBTB48-206 - 326 4.9e-07 29.4 4.9 2 7 0.41 2.6e+02 1.5 0.6 7 24 76 93 74 98 0.84 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZBTB48-206 - 326 4.9e-07 29.4 4.9 3 7 0.48 3e+02 1.3 0.4 7 25 105 123 99 125 0.88 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZBTB48-206 - 326 4.9e-07 29.4 4.9 4 7 9.3e-06 0.006 16.3 0.3 5 24 131 150 128 152 0.93 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZBTB48-206 - 326 4.9e-07 29.4 4.9 5 7 0.2 1.3e+02 2.5 0.3 7 24 161 178 159 182 0.89 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZBTB48-206 - 326 4.9e-07 29.4 4.9 6 7 4.3 2.7e+03 -1.8 0.2 7 14 190 197 188 207 0.84 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZBTB48-206 - 326 4.9e-07 29.4 4.9 7 7 1e-07 6.5e-05 22.6 0.6 7 26 218 237 216 238 0.94 zinc-finger C2H2-type # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB48-206.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB48-206.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB48-206.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB48-206.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB48-206.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:57:57 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB48-207.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB48-207.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB48-207.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB48-207.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB48-207.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:57:57 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZBTB48-208 - 154 1.7e-23 81.9 30.2 1 5 0.095 57 4.4 1.0 15 24 14 23 9 23 0.85 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZBTB48-208 - 154 1.7e-23 81.9 30.2 2 5 0.00012 0.07 13.6 0.2 1 25 28 53 28 54 0.87 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZBTB48-208 - 154 1.7e-23 81.9 30.2 3 5 5.9e-06 0.0036 17.7 0.4 2 22 58 79 57 83 0.85 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZBTB48-208 - 154 1.7e-23 81.9 30.2 4 5 2.1e-08 1.2e-05 25.5 1.6 1 25 86 111 86 112 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZBTB48-208 - 154 1.7e-23 81.9 30.2 5 5 6.7e-13 4e-10 39.7 1.9 1 26 115 140 115 140 0.95 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZBTB48-208 - 154 5.8e-14 51.7 31.0 1 5 5.3e-06 0.0032 17.8 1.6 1 23 14 37 14 37 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZBTB48-208 - 154 5.8e-14 51.7 31.0 2 5 0.6 3.6e+02 1.9 0.4 5 21 47 63 46 66 0.80 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZBTB48-208 - 154 5.8e-14 51.7 31.0 3 5 0.00015 0.087 13.3 0.4 1 23 72 95 72 95 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZBTB48-208 - 154 5.8e-14 51.7 31.0 4 5 1.3e-06 0.00077 19.8 3.6 1 23 101 123 101 123 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZBTB48-208 - 154 5.8e-14 51.7 31.0 5 5 1e-05 0.0062 16.9 0.3 1 15 129 143 129 145 0.90 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZBTB48-208 - 154 1.4e-12 47.3 31.4 1 5 9.6e-07 0.00058 20.5 1.6 1 24 14 37 14 37 0.97 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZBTB48-208 - 154 1.4e-12 47.3 31.4 2 5 0.087 52 5.1 0.7 5 24 47 66 43 66 0.87 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZBTB48-208 - 154 1.4e-12 47.3 31.4 3 5 6.6e-05 0.04 14.8 0.5 1 24 72 95 72 95 0.97 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZBTB48-208 - 154 1.4e-12 47.3 31.4 4 5 0.00027 0.16 12.9 2.9 1 23 101 123 101 124 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZBTB48-208 - 154 1.4e-12 47.3 31.4 5 5 0.00019 0.11 13.4 0.3 1 15 129 143 129 145 0.89 C2H2-type zinc finger zf-H2C2_5 PF13909.6 26 ZBTB48-208 - 154 1.1e-07 31.5 14.5 1 3 0.009 5.4 6.9 1.0 1 24 14 37 14 38 0.89 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 ZBTB48-208 - 154 1.1e-07 31.5 14.5 2 3 6.4e-05 0.038 13.7 0.2 3 25 74 96 72 97 0.95 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 ZBTB48-208 - 154 1.1e-07 31.5 14.5 3 3 2.3e-06 0.0014 18.4 1.6 3 26 103 125 101 125 0.98 C2H2-type zinc-finger domain # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB48-208.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB48-208.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB48-208.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB48-208.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB48-208.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:57:58 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZBTB49-201 - 765 1.4e-42 142.2 50.7 1 7 0.015 14 6.3 0.2 12 26 392 406 387 406 0.87 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZBTB49-201 - 765 1.4e-42 142.2 50.7 2 7 2.2e-10 2e-07 31.1 1.4 1 25 409 433 409 434 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZBTB49-201 - 765 1.4e-42 142.2 50.7 3 7 1.2e-08 1.1e-05 25.7 0.1 1 25 437 461 437 462 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZBTB49-201 - 765 1.4e-42 142.2 50.7 4 7 4e-08 3.6e-05 24.0 0.0 3 26 467 490 465 490 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZBTB49-201 - 765 1.4e-42 142.2 50.7 5 7 5e-08 4.5e-05 23.7 1.2 1 25 493 517 493 517 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZBTB49-201 - 765 1.4e-42 142.2 50.7 6 7 8e-09 7.1e-06 26.2 1.6 2 24 522 544 521 545 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZBTB49-201 - 765 1.4e-42 142.2 50.7 7 7 5e-12 4.4e-09 36.3 2.7 1 26 549 574 549 574 0.95 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZBTB49-201 - 765 1.2e-36 123.1 47.6 1 7 1.5e-08 1.4e-05 25.3 1.0 1 23 395 417 395 417 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZBTB49-201 - 765 1.2e-36 123.1 47.6 2 7 6e-09 5.4e-06 26.6 1.1 1 23 423 445 423 445 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZBTB49-201 - 765 1.2e-36 123.1 47.6 3 7 1.9e-06 0.0017 18.7 0.0 1 23 451 473 451 473 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZBTB49-201 - 765 1.2e-36 123.1 47.6 4 7 2.3e-06 0.0021 18.4 2.0 3 23 481 501 479 501 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZBTB49-201 - 765 1.2e-36 123.1 47.6 5 7 2.4e-07 0.00021 21.5 1.3 1 23 507 529 507 529 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZBTB49-201 - 765 1.2e-36 123.1 47.6 6 7 1.2e-06 0.001 19.4 1.0 1 23 535 557 535 557 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZBTB49-201 - 765 1.2e-36 123.1 47.6 7 7 8.6e-07 0.00077 19.8 4.1 1 23 563 585 563 585 0.98 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZBTB49-201 - 765 3.7e-26 89.6 44.7 1 7 0.00013 0.11 13.4 1.1 1 23 395 417 395 418 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZBTB49-201 - 765 3.7e-26 89.6 44.7 2 7 9.5e-07 0.00086 20.0 0.9 1 23 423 445 423 446 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZBTB49-201 - 765 3.7e-26 89.6 44.7 3 7 1.2e-05 0.011 16.5 0.0 1 23 451 473 451 474 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZBTB49-201 - 765 3.7e-26 89.6 44.7 4 7 8.5e-06 0.0076 17.0 1.3 2 23 480 501 479 502 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZBTB49-201 - 765 3.7e-26 89.6 44.7 5 7 2.6e-05 0.023 15.5 0.9 1 23 507 529 507 530 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZBTB49-201 - 765 3.7e-26 89.6 44.7 6 7 5.5e-06 0.005 17.6 0.9 1 23 535 557 535 558 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZBTB49-201 - 765 3.7e-26 89.6 44.7 7 7 2.4e-05 0.022 15.6 3.2 1 23 563 585 563 585 0.88 C2H2-type zinc finger BTB PF00651.31 111 ZBTB49-201 - 765 4.6e-25 88.0 2.1 1 1 1.1e-27 1e-24 86.9 2.1 1 109 15 119 15 121 0.93 BTB/POZ domain zf-C2H2_jaz PF12171.8 27 ZBTB49-201 - 765 6.2e-17 61.4 22.7 1 7 6.8e-06 0.0061 16.8 0.3 1 24 394 417 394 417 0.96 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZBTB49-201 - 765 6.2e-17 61.4 22.7 2 7 0.00011 0.095 13.0 0.1 2 22 423 443 422 443 0.95 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZBTB49-201 - 765 6.2e-17 61.4 22.7 3 7 0.019 17 5.9 0.0 2 21 451 470 450 471 0.85 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZBTB49-201 - 765 6.2e-17 61.4 22.7 4 7 0.0014 1.3 9.4 0.6 4 24 481 501 478 501 0.95 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZBTB49-201 - 765 6.2e-17 61.4 22.7 5 7 0.00074 0.66 10.3 0.2 2 20 507 525 506 526 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZBTB49-201 - 765 6.2e-17 61.4 22.7 6 7 0.03 27 5.2 0.0 2 24 535 557 534 557 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZBTB49-201 - 765 6.2e-17 61.4 22.7 7 7 0.00068 0.61 10.4 0.5 2 22 563 583 562 583 0.94 Zinc-finger double-stranded RNA-binding zf-met PF12874.7 25 ZBTB49-201 - 765 9e-13 48.2 32.0 1 7 2.1e-05 0.019 15.3 0.2 1 23 395 417 395 418 0.93 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZBTB49-201 - 765 9e-13 48.2 32.0 2 7 0.00013 0.11 12.9 0.2 1 21 423 443 423 443 0.96 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZBTB49-201 - 765 9e-13 48.2 32.0 3 7 0.0015 1.3 9.5 0.0 1 19 451 469 451 471 0.92 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZBTB49-201 - 765 9e-13 48.2 32.0 4 7 0.17 1.6e+02 2.9 0.8 3 21 481 499 479 502 0.88 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZBTB49-201 - 765 9e-13 48.2 32.0 5 7 0.22 1.9e+02 2.6 0.3 1 11 507 517 507 519 0.91 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZBTB49-201 - 765 9e-13 48.2 32.0 6 7 0.016 14 6.2 0.3 1 21 535 555 535 558 0.91 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZBTB49-201 - 765 9e-13 48.2 32.0 7 7 1.9e-05 0.017 15.5 2.1 1 20 563 582 563 585 0.93 Zinc-finger of C2H2 type zf-C2H2_6 PF13912.6 27 ZBTB49-201 - 765 1.4e-12 47.3 49.2 1 7 0.0078 7 6.8 1.0 2 24 395 417 394 420 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZBTB49-201 - 765 1.4e-12 47.3 49.2 2 7 2.7e-05 0.024 14.6 1.3 2 25 423 446 423 448 0.95 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZBTB49-201 - 765 1.4e-12 47.3 49.2 3 7 0.01 9.4 6.4 0.1 2 11 451 460 451 461 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZBTB49-201 - 765 1.4e-12 47.3 49.2 4 7 1.7e-06 0.0015 18.5 1.6 2 24 479 501 479 503 0.96 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZBTB49-201 - 765 1.4e-12 47.3 49.2 5 7 7.6e-08 6.9e-05 22.7 0.3 1 24 506 529 506 532 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZBTB49-201 - 765 1.4e-12 47.3 49.2 6 7 0.65 5.8e+02 0.7 1.2 2 24 535 557 535 560 0.75 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZBTB49-201 - 765 1.4e-12 47.3 49.2 7 7 0.017 16 5.7 5.0 2 24 563 585 563 587 0.95 C2H2-type zinc finger # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB49-201.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB49-201.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB49-201.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB49-201.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB49-201.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:57:58 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB49-202.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB49-202.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB49-202.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB49-202.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB49-202.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:57:58 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZBTB49-203 - 248 3.1e-15 55.8 21.0 1 3 9.9e-10 1.8e-06 28.1 1.6 2 24 5 27 4 28 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZBTB49-203 - 248 3.1e-15 55.8 21.0 2 3 6.1e-13 1.1e-09 38.3 2.7 1 26 32 57 32 57 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZBTB49-203 - 248 3.1e-15 55.8 21.0 3 3 0.65 1.2e+03 0.2 1.9 2 9 61 68 60 68 0.94 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZBTB49-203 - 248 4.2e-08 33.2 19.7 1 3 0.89 1.6e+03 -0.1 0.9 14 23 3 12 2 12 0.85 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZBTB49-203 - 248 4.2e-08 33.2 19.7 2 3 1.4e-07 0.00026 21.3 1.0 1 23 18 40 18 40 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZBTB49-203 - 248 4.2e-08 33.2 19.7 3 3 1.1e-07 0.00019 21.7 4.1 1 23 46 68 46 68 0.98 Zinc finger, C2H2 type # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB49-203.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB49-203.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB49-203.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB49-203.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB49-203.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:57:59 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB49-204.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB49-204.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB49-204.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB49-204.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB49-204.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:57:59 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-C2H2 PF00096.26 23 ZBTB49-205 - 120 5.8e-07 29.6 1.0 1 1 4.5e-10 1.2e-06 28.7 1.0 1 23 95 117 95 117 0.98 Zinc finger, C2H2 type # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB49-205.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB49-205.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB49-205.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB49-205.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB49-205.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:57:59 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- BTB PF00651.31 111 ZBTB49-206 - 453 2.2e-25 89.0 2.1 1 1 1.7e-28 4.4e-25 88.1 2.1 1 109 15 119 15 121 0.93 BTB/POZ domain # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB49-206.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB49-206.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB49-206.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB49-206.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB49-206.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:58:00 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- BTB PF00651.31 111 ZBTB5-201 - 677 4.1e-29 101.0 1.1 1 1 3.4e-32 8.8e-29 100.0 1.1 1 109 14 121 14 123 0.92 BTB/POZ domain zf-H2C2_2 PF13465.6 26 ZBTB5-201 - 677 5.7e-08 32.8 13.3 1 3 0.0016 4 8.0 0.2 9 26 607 624 598 624 0.73 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZBTB5-201 - 677 5.7e-08 32.8 13.3 2 3 1.1e-10 2.8e-07 30.7 2.8 3 25 629 651 627 652 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZBTB5-201 - 677 5.7e-08 32.8 13.3 3 3 1.8 4.6e+03 -1.6 0.3 4 11 654 661 653 663 0.76 Zinc-finger double domain # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB5-201.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB5-201.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB5-201.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB5-201.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB5-201.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:58:00 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- BTB PF00651.31 111 ZBTB6-201 - 424 5.3e-21 74.9 2.0 1 2 4.7e-24 5.3e-21 74.9 2.0 1 109 23 125 23 127 0.92 BTB/POZ domain BTB PF00651.31 111 ZBTB6-201 - 424 5.3e-21 74.9 2.0 2 2 1.6 1.8e+03 -0.9 0.1 16 32 312 329 310 340 0.78 BTB/POZ domain zf-C2H2 PF00096.26 23 ZBTB6-201 - 424 1.2e-13 50.7 34.2 1 4 0.0022 2.5 8.7 3.3 1 23 301 323 301 323 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZBTB6-201 - 424 1.2e-13 50.7 34.2 2 4 2e-08 2.3e-05 24.6 1.2 2 23 327 348 326 348 0.94 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZBTB6-201 - 424 1.2e-13 50.7 34.2 3 4 4.1e-07 0.00046 20.5 0.6 1 23 354 376 354 376 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZBTB6-201 - 424 1.2e-13 50.7 34.2 4 4 0.00012 0.13 12.7 7.7 1 23 382 405 382 405 0.96 Zinc finger, C2H2 type zf-H2C2_2 PF13465.6 26 ZBTB6-201 - 424 4.2e-13 49.1 22.5 1 5 0.029 32 5.2 0.1 14 26 300 312 295 312 0.88 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZBTB6-201 - 424 4.2e-13 49.1 22.5 2 5 0.0024 2.7 8.6 1.0 1 25 315 336 315 337 0.87 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZBTB6-201 - 424 4.2e-13 49.1 22.5 3 5 8.2e-11 9.2e-08 32.2 0.1 1 25 340 364 340 365 0.97 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZBTB6-201 - 424 4.2e-13 49.1 22.5 4 5 3.4e-05 0.038 14.4 3.0 2 26 369 393 368 393 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZBTB6-201 - 424 4.2e-13 49.1 22.5 5 5 2.3 2.6e+03 -0.9 0.1 1 10 396 405 396 412 0.73 Zinc-finger double domain zf-C2H2_4 PF13894.6 24 ZBTB6-201 - 424 1.3e-11 44.3 32.4 1 4 0.00014 0.16 12.9 3.0 1 23 301 323 301 324 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZBTB6-201 - 424 1.3e-11 44.3 32.4 2 4 9.2e-07 0.001 19.7 0.6 1 23 326 348 326 349 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZBTB6-201 - 424 1.3e-11 44.3 32.4 3 4 6.5e-06 0.0073 17.1 0.6 1 23 354 376 354 377 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZBTB6-201 - 424 1.3e-11 44.3 32.4 4 4 0.0016 1.8 9.6 7.5 1 24 382 405 382 405 0.97 C2H2-type zinc finger zf-met PF12874.7 25 ZBTB6-201 - 424 1e-06 28.9 22.5 1 4 3.2 3.6e+03 -1.4 0.1 2 21 302 321 301 321 0.82 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZBTB6-201 - 424 1e-06 28.9 22.5 2 4 0.0044 4.9 7.7 0.8 6 23 331 348 328 349 0.95 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZBTB6-201 - 424 1e-06 28.9 22.5 3 4 5.1e-07 0.00057 20.2 0.6 1 21 354 374 354 376 0.94 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZBTB6-201 - 424 1e-06 28.9 22.5 4 4 0.0001 0.11 12.9 3.6 1 22 382 403 382 404 0.95 Zinc-finger of C2H2 type # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB6-201.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB6-201.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB6-201.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB6-201.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB6-201.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:58:01 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- BTB PF00651.31 111 ZBTB7A-201 - 584 1.3e-32 112.3 0.1 1 1 1.4e-35 2e-32 111.7 0.1 1 110 24 130 24 131 0.93 BTB/POZ domain zf-H2C2_2 PF13465.6 26 ZBTB7A-201 - 584 2.3e-24 84.7 22.3 1 4 0.26 3.5e+02 1.9 0.2 16 22 383 389 368 390 0.68 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZBTB7A-201 - 584 2.3e-24 84.7 22.3 2 4 2.8e-10 3.8e-07 30.2 1.4 4 26 399 421 396 421 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZBTB7A-201 - 584 2.3e-24 84.7 22.3 3 4 9.4e-11 1.3e-07 31.7 1.0 2 26 425 449 424 449 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZBTB7A-201 - 584 2.3e-24 84.7 22.3 4 4 3e-11 4.2e-08 33.3 1.3 1 26 452 477 452 477 0.95 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZBTB7A-201 - 584 2.2e-14 53.0 25.7 1 4 0.0021 2.9 8.5 0.0 2 23 383 404 382 404 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZBTB7A-201 - 584 2.2e-14 53.0 25.7 2 4 1e-08 1.4e-05 25.2 1.8 1 23 410 432 410 432 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZBTB7A-201 - 584 2.2e-14 53.0 25.7 3 4 1.7e-07 0.00023 21.4 0.7 1 23 438 460 438 460 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZBTB7A-201 - 584 2.2e-14 53.0 25.7 4 4 0.00097 1.3 9.6 6.1 1 22 466 487 466 487 0.95 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZBTB7A-201 - 584 1.8e-13 50.0 23.0 1 4 0.0014 1.9 9.5 0.1 2 23 383 404 382 405 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZBTB7A-201 - 584 1.8e-13 50.0 23.0 2 4 6.6e-07 0.00091 19.9 1.1 1 23 410 432 410 433 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZBTB7A-201 - 584 1.8e-13 50.0 23.0 3 4 6.4e-06 0.0089 16.8 0.5 1 23 438 460 438 461 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZBTB7A-201 - 584 1.8e-13 50.0 23.0 4 4 2.4e-05 0.034 15.0 4.6 1 22 466 487 466 488 0.96 C2H2-type zinc finger # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB7A-201.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB7A-201.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB7A-201.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB7A-201.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB7A-201.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:58:01 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- BTB PF00651.31 111 ZBTB7A-202 - 584 1.3e-32 112.3 0.1 1 1 1.4e-35 2e-32 111.7 0.1 1 110 24 130 24 131 0.93 BTB/POZ domain zf-H2C2_2 PF13465.6 26 ZBTB7A-202 - 584 2.3e-24 84.7 22.3 1 4 0.26 3.5e+02 1.9 0.2 16 22 383 389 368 390 0.68 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZBTB7A-202 - 584 2.3e-24 84.7 22.3 2 4 2.8e-10 3.8e-07 30.2 1.4 4 26 399 421 396 421 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZBTB7A-202 - 584 2.3e-24 84.7 22.3 3 4 9.4e-11 1.3e-07 31.7 1.0 2 26 425 449 424 449 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZBTB7A-202 - 584 2.3e-24 84.7 22.3 4 4 3e-11 4.2e-08 33.3 1.3 1 26 452 477 452 477 0.95 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZBTB7A-202 - 584 2.2e-14 53.0 25.7 1 4 0.0021 2.9 8.5 0.0 2 23 383 404 382 404 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZBTB7A-202 - 584 2.2e-14 53.0 25.7 2 4 1e-08 1.4e-05 25.2 1.8 1 23 410 432 410 432 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZBTB7A-202 - 584 2.2e-14 53.0 25.7 3 4 1.7e-07 0.00023 21.4 0.7 1 23 438 460 438 460 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZBTB7A-202 - 584 2.2e-14 53.0 25.7 4 4 0.00097 1.3 9.6 6.1 1 22 466 487 466 487 0.95 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZBTB7A-202 - 584 1.8e-13 50.0 23.0 1 4 0.0014 1.9 9.5 0.1 2 23 383 404 382 405 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZBTB7A-202 - 584 1.8e-13 50.0 23.0 2 4 6.6e-07 0.00091 19.9 1.1 1 23 410 432 410 433 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZBTB7A-202 - 584 1.8e-13 50.0 23.0 3 4 6.4e-06 0.0089 16.8 0.5 1 23 438 460 438 461 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZBTB7A-202 - 584 1.8e-13 50.0 23.0 4 4 2.4e-05 0.034 15.0 4.6 1 22 466 487 466 488 0.96 C2H2-type zinc finger # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB7A-202.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB7A-202.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB7A-202.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB7A-202.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB7A-202.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:58:01 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- BTB PF00651.31 111 ZBTB7B-201 - 539 2.3e-33 114.7 0.0 1 1 2.7e-36 3.5e-33 114.2 0.0 1 110 24 144 24 145 0.93 BTB/POZ domain zf-H2C2_2 PF13465.6 26 ZBTB7B-201 - 539 2.2e-21 75.3 34.8 1 5 0.024 31 5.2 0.2 10 22 341 353 337 354 0.79 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZBTB7B-201 - 539 2.2e-21 75.3 34.8 2 5 8.8e-11 1.1e-07 31.9 0.8 4 26 363 385 360 385 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZBTB7B-201 - 539 2.2e-21 75.3 34.8 3 5 8.9e-10 1.1e-06 28.7 4.3 2 26 389 413 388 413 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZBTB7B-201 - 539 2.2e-21 75.3 34.8 4 5 1.5e-09 1.9e-06 28.0 4.2 1 25 416 440 416 441 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZBTB7B-201 - 539 2.2e-21 75.3 34.8 5 5 3.2 4.1e+03 -1.5 0.2 1 7 444 450 444 452 0.84 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZBTB7B-201 - 539 4.6e-12 45.7 30.2 1 4 0.0071 9 7.0 1.1 2 23 347 368 346 368 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZBTB7B-201 - 539 4.6e-12 45.7 30.2 2 4 4.4e-08 5.6e-05 23.4 0.6 1 23 374 396 374 396 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZBTB7B-201 - 539 4.6e-12 45.7 30.2 3 4 0.00026 0.33 11.5 6.0 1 23 402 424 402 424 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZBTB7B-201 - 539 4.6e-12 45.7 30.2 4 4 9.2e-07 0.0012 19.2 1.7 1 21 430 450 430 451 0.96 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZBTB7B-201 - 539 2e-11 43.7 27.6 1 4 0.0018 2.3 9.3 0.8 2 23 347 368 346 369 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZBTB7B-201 - 539 2e-11 43.7 27.6 2 4 6.2e-07 0.0008 20.0 0.4 1 23 374 396 374 397 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZBTB7B-201 - 539 2e-11 43.7 27.6 3 4 4.2e-05 0.053 14.4 4.5 1 23 402 424 402 425 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZBTB7B-201 - 539 2e-11 43.7 27.6 4 4 3.6e-05 0.046 14.6 1.8 1 21 430 450 430 452 0.95 C2H2-type zinc finger zf-C2H2_jaz PF12171.8 27 ZBTB7B-201 - 539 1.9e-07 31.2 12.5 1 4 0.017 21 5.5 0.0 4 24 348 368 347 368 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZBTB7B-201 - 539 1.9e-07 31.2 12.5 2 4 0.042 54 4.2 0.1 2 22 374 394 373 396 0.90 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZBTB7B-201 - 539 1.9e-07 31.2 12.5 3 4 0.00074 0.95 9.8 0.5 2 21 402 421 401 422 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZBTB7B-201 - 539 1.9e-07 31.2 12.5 4 4 4.6e-06 0.0059 16.9 1.3 2 24 430 452 429 453 0.93 Zinc-finger double-stranded RNA-binding # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB7B-201.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB7B-201.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB7B-201.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB7B-201.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB7B-201.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:58:02 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- BTB PF00651.31 111 ZBTB7B-202 - 539 2.3e-33 114.7 0.0 1 1 2.7e-36 3.5e-33 114.2 0.0 1 110 24 144 24 145 0.93 BTB/POZ domain zf-H2C2_2 PF13465.6 26 ZBTB7B-202 - 539 2.2e-21 75.3 34.8 1 5 0.024 31 5.2 0.2 10 22 341 353 337 354 0.79 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZBTB7B-202 - 539 2.2e-21 75.3 34.8 2 5 8.8e-11 1.1e-07 31.9 0.8 4 26 363 385 360 385 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZBTB7B-202 - 539 2.2e-21 75.3 34.8 3 5 8.9e-10 1.1e-06 28.7 4.3 2 26 389 413 388 413 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZBTB7B-202 - 539 2.2e-21 75.3 34.8 4 5 1.5e-09 1.9e-06 28.0 4.2 1 25 416 440 416 441 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZBTB7B-202 - 539 2.2e-21 75.3 34.8 5 5 3.2 4.1e+03 -1.5 0.2 1 7 444 450 444 452 0.84 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZBTB7B-202 - 539 4.6e-12 45.7 30.2 1 4 0.0071 9 7.0 1.1 2 23 347 368 346 368 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZBTB7B-202 - 539 4.6e-12 45.7 30.2 2 4 4.4e-08 5.6e-05 23.4 0.6 1 23 374 396 374 396 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZBTB7B-202 - 539 4.6e-12 45.7 30.2 3 4 0.00026 0.33 11.5 6.0 1 23 402 424 402 424 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZBTB7B-202 - 539 4.6e-12 45.7 30.2 4 4 9.2e-07 0.0012 19.2 1.7 1 21 430 450 430 451 0.96 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZBTB7B-202 - 539 2e-11 43.7 27.6 1 4 0.0018 2.3 9.3 0.8 2 23 347 368 346 369 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZBTB7B-202 - 539 2e-11 43.7 27.6 2 4 6.2e-07 0.0008 20.0 0.4 1 23 374 396 374 397 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZBTB7B-202 - 539 2e-11 43.7 27.6 3 4 4.2e-05 0.053 14.4 4.5 1 23 402 424 402 425 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZBTB7B-202 - 539 2e-11 43.7 27.6 4 4 3.6e-05 0.046 14.6 1.8 1 21 430 450 430 452 0.95 C2H2-type zinc finger zf-C2H2_jaz PF12171.8 27 ZBTB7B-202 - 539 1.9e-07 31.2 12.5 1 4 0.017 21 5.5 0.0 4 24 348 368 347 368 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZBTB7B-202 - 539 1.9e-07 31.2 12.5 2 4 0.042 54 4.2 0.1 2 22 374 394 373 396 0.90 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZBTB7B-202 - 539 1.9e-07 31.2 12.5 3 4 0.00074 0.95 9.8 0.5 2 21 402 421 401 422 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZBTB7B-202 - 539 1.9e-07 31.2 12.5 4 4 4.6e-06 0.0059 16.9 1.3 2 24 430 452 429 453 0.93 Zinc-finger double-stranded RNA-binding # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB7B-202.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB7B-202.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB7B-202.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB7B-202.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB7B-202.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:58:02 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- BTB PF00651.31 111 ZBTB7B-203 - 573 2.6e-33 114.6 0.0 1 1 2.8e-36 3.8e-33 114.0 0.0 1 110 58 178 58 179 0.93 BTB/POZ domain zf-H2C2_2 PF13465.6 26 ZBTB7B-203 - 573 3e-21 74.8 34.8 1 5 0.024 33 5.1 0.2 10 22 375 387 371 388 0.79 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZBTB7B-203 - 573 3e-21 74.8 34.8 2 5 8.8e-11 1.2e-07 31.8 0.8 4 26 397 419 394 419 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZBTB7B-203 - 573 3e-21 74.8 34.8 3 5 8.8e-10 1.2e-06 28.6 4.3 2 26 423 447 422 447 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZBTB7B-203 - 573 3e-21 74.8 34.8 4 5 1.5e-09 2.1e-06 27.9 4.2 1 25 450 474 450 475 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZBTB7B-203 - 573 3e-21 74.8 34.8 5 5 3.2 4.4e+03 -1.6 0.2 1 7 478 484 478 486 0.84 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZBTB7B-203 - 573 6.3e-12 45.3 30.2 1 4 0.007 9.7 6.9 1.1 2 23 381 402 380 402 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZBTB7B-203 - 573 6.3e-12 45.3 30.2 2 4 4.4e-08 6e-05 23.3 0.6 1 23 408 430 408 430 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZBTB7B-203 - 573 6.3e-12 45.3 30.2 3 4 0.00026 0.36 11.4 6.0 1 23 436 458 436 458 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZBTB7B-203 - 573 6.3e-12 45.3 30.2 4 4 9.1e-07 0.0013 19.1 1.7 1 21 464 484 464 485 0.96 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZBTB7B-203 - 573 2.8e-11 43.3 27.6 1 4 0.0018 2.5 9.2 0.8 2 23 381 402 380 403 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZBTB7B-203 - 573 2.8e-11 43.3 27.6 2 4 6.2e-07 0.00086 19.9 0.4 1 23 408 430 408 431 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZBTB7B-203 - 573 2.8e-11 43.3 27.6 3 4 4.2e-05 0.057 14.3 4.5 1 23 436 458 436 459 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZBTB7B-203 - 573 2.8e-11 43.3 27.6 4 4 3.6e-05 0.05 14.5 1.8 1 21 464 484 464 486 0.95 C2H2-type zinc finger zf-C2H2_jaz PF12171.8 27 ZBTB7B-203 - 573 2.5e-07 30.8 12.5 1 4 0.016 23 5.4 0.0 4 24 382 402 381 402 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZBTB7B-203 - 573 2.5e-07 30.8 12.5 2 4 0.042 58 4.1 0.1 2 22 408 428 407 430 0.90 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZBTB7B-203 - 573 2.5e-07 30.8 12.5 3 4 0.00074 1 9.7 0.5 2 21 436 455 435 456 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZBTB7B-203 - 573 2.5e-07 30.8 12.5 4 4 4.6e-06 0.0063 16.8 1.3 2 24 464 486 463 487 0.93 Zinc-finger double-stranded RNA-binding # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB7B-203.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB7B-203.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB7B-203.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB7B-203.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB7B-203.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:58:02 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB7B-204.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB7B-204.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB7B-204.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB7B-204.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB7B-204.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:58:03 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB7B-205.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB7B-205.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB7B-205.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB7B-205.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB7B-205.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:58:03 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB7B-206.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB7B-206.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB7B-206.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB7B-206.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB7B-206.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:58:04 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- BTB PF00651.31 111 ZBTB7B-207 - 539 2.3e-33 114.7 0.0 1 1 2.7e-36 3.5e-33 114.2 0.0 1 110 24 144 24 145 0.93 BTB/POZ domain zf-H2C2_2 PF13465.6 26 ZBTB7B-207 - 539 2.2e-21 75.3 34.8 1 5 0.024 31 5.2 0.2 10 22 341 353 337 354 0.79 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZBTB7B-207 - 539 2.2e-21 75.3 34.8 2 5 8.8e-11 1.1e-07 31.9 0.8 4 26 363 385 360 385 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZBTB7B-207 - 539 2.2e-21 75.3 34.8 3 5 8.9e-10 1.1e-06 28.7 4.3 2 26 389 413 388 413 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZBTB7B-207 - 539 2.2e-21 75.3 34.8 4 5 1.5e-09 1.9e-06 28.0 4.2 1 25 416 440 416 441 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZBTB7B-207 - 539 2.2e-21 75.3 34.8 5 5 3.2 4.1e+03 -1.5 0.2 1 7 444 450 444 452 0.84 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZBTB7B-207 - 539 4.6e-12 45.7 30.2 1 4 0.0071 9 7.0 1.1 2 23 347 368 346 368 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZBTB7B-207 - 539 4.6e-12 45.7 30.2 2 4 4.4e-08 5.6e-05 23.4 0.6 1 23 374 396 374 396 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZBTB7B-207 - 539 4.6e-12 45.7 30.2 3 4 0.00026 0.33 11.5 6.0 1 23 402 424 402 424 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZBTB7B-207 - 539 4.6e-12 45.7 30.2 4 4 9.2e-07 0.0012 19.2 1.7 1 21 430 450 430 451 0.96 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZBTB7B-207 - 539 2e-11 43.7 27.6 1 4 0.0018 2.3 9.3 0.8 2 23 347 368 346 369 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZBTB7B-207 - 539 2e-11 43.7 27.6 2 4 6.2e-07 0.0008 20.0 0.4 1 23 374 396 374 397 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZBTB7B-207 - 539 2e-11 43.7 27.6 3 4 4.2e-05 0.053 14.4 4.5 1 23 402 424 402 425 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZBTB7B-207 - 539 2e-11 43.7 27.6 4 4 3.6e-05 0.046 14.6 1.8 1 21 430 450 430 452 0.95 C2H2-type zinc finger zf-C2H2_jaz PF12171.8 27 ZBTB7B-207 - 539 1.9e-07 31.2 12.5 1 4 0.017 21 5.5 0.0 4 24 348 368 347 368 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZBTB7B-207 - 539 1.9e-07 31.2 12.5 2 4 0.042 54 4.2 0.1 2 22 374 394 373 396 0.90 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZBTB7B-207 - 539 1.9e-07 31.2 12.5 3 4 0.00074 0.95 9.8 0.5 2 21 402 421 401 422 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZBTB7B-207 - 539 1.9e-07 31.2 12.5 4 4 4.6e-06 0.0059 16.9 1.3 2 24 430 452 429 453 0.93 Zinc-finger double-stranded RNA-binding # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB7B-207.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB7B-207.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB7B-207.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB7B-207.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB7B-207.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:58:04 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- BTB PF00651.31 111 ZBTB8A-201 - 340 1.1e-27 96.4 0.3 1 1 1.1e-30 1.7e-27 95.9 0.3 1 110 14 121 14 122 0.94 BTB/POZ domain zf-H2C2_2 PF13465.6 26 ZBTB8A-201 - 340 1.7e-08 34.5 11.7 1 3 0.018 26 5.4 0.2 14 21 281 288 269 293 0.78 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZBTB8A-201 - 340 1.7e-08 34.5 11.7 2 3 1.2e-11 1.7e-08 34.5 2.3 1 25 296 320 296 321 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZBTB8A-201 - 340 1.7e-08 34.5 11.7 3 3 3.7 5.5e+03 -1.9 0.1 1 8 324 331 324 332 0.82 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZBTB8A-201 - 340 1.5e-07 31.4 14.7 1 3 9.3 1.4e+04 -3.1 0.0 7 13 32 38 25 40 0.66 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZBTB8A-201 - 340 1.5e-07 31.4 14.7 2 3 4.3e-06 0.0064 16.9 5.1 1 21 282 302 282 304 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZBTB8A-201 - 340 1.5e-07 31.4 14.7 3 3 8.1e-07 0.0012 19.2 1.3 1 22 310 331 310 331 0.96 Zinc finger, C2H2 type # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB8A-201.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB8A-201.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB8A-201.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB8A-201.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB8A-201.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:58:04 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- BTB PF00651.31 111 ZBTB8A-202 - 441 1.7e-27 95.8 0.3 1 1 1.7e-30 2.7e-27 95.2 0.3 1 110 14 121 14 122 0.94 BTB/POZ domain zf-H2C2_2 PF13465.6 26 ZBTB8A-202 - 441 2.4e-08 34.0 2.3 1 3 0.022 36 5.0 0.2 14 21 281 288 269 293 0.78 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZBTB8A-202 - 441 2.4e-08 34.0 2.3 2 3 1.5e-11 2.4e-08 34.0 2.3 1 25 296 320 296 321 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZBTB8A-202 - 441 2.4e-08 34.0 2.3 3 3 7.1 1.2e+04 -2.9 4.7 1 9 324 333 324 346 0.71 Zinc-finger double domain # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB8A-202.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB8A-202.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB8A-202.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB8A-202.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB8A-202.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:58:05 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- BTB PF00651.31 111 ZBTB9-201 - 473 3.9e-22 78.6 0.0 1 1 3.6e-25 6.4e-22 77.9 0.0 1 109 38 140 38 142 0.92 BTB/POZ domain # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB9-201.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB9-201.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB9-201.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB9-201.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB9-201.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:58:05 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB9-202.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB9-202.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB9-202.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB9-202.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB9-202.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:58:05 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB9-203.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB9-203.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB9-203.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB9-203.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB9-203.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:58:06 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB9-204.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB9-204.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB9-204.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB9-204.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZBTB9-204.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:58:06 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZEB1-201 - 1124 2.2e-29 100.5 56.2 1 7 0.02 28 5.4 0.2 15 26 170 181 162 181 0.85 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZEB1-201 - 1124 2.2e-29 100.5 56.2 2 7 1e-05 0.014 15.8 1.2 1 25 184 210 184 211 0.83 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZEB1-201 - 1124 2.2e-29 100.5 56.2 3 7 3.3e-05 0.046 14.2 2.0 2 26 215 251 214 251 0.82 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZEB1-201 - 1124 2.2e-29 100.5 56.2 4 7 8.5e-11 1.2e-07 31.9 5.1 1 26 254 279 254 279 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZEB1-201 - 1124 2.2e-29 100.5 56.2 5 7 0.061 84 3.9 0.2 14 24 903 913 891 914 0.76 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZEB1-201 - 1124 2.2e-29 100.5 56.2 6 7 5e-09 6.9e-06 26.3 5.0 2 26 919 943 918 943 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZEB1-201 - 1124 2.2e-29 100.5 56.2 7 7 4.8e-11 6.6e-08 32.6 2.5 1 26 946 971 946 971 0.94 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZEB1-201 - 1124 5.3e-25 86.4 66.2 1 7 3.2e-06 0.0044 17.4 1.3 2 23 171 193 170 193 0.95 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZEB1-201 - 1124 5.3e-25 86.4 66.2 2 7 4.9e-06 0.0067 16.8 2.3 1 23 200 222 200 222 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZEB1-201 - 1124 5.3e-25 86.4 66.2 3 7 7.9e-08 0.00011 22.5 5.0 1 23 240 262 240 262 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZEB1-201 - 1124 5.3e-25 86.4 66.2 4 7 8.7e-06 0.012 16.0 1.5 1 21 268 288 268 289 0.95 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZEB1-201 - 1124 5.3e-25 86.4 66.2 5 7 6.4e-05 0.088 13.3 0.8 1 23 904 926 904 926 0.94 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZEB1-201 - 1124 5.3e-25 86.4 66.2 6 7 1.2e-06 0.0016 18.8 7.2 1 23 932 954 932 954 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZEB1-201 - 1124 5.3e-25 86.4 66.2 7 7 6.4e-06 0.0088 16.4 3.2 1 21 960 980 960 981 0.96 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZEB1-201 - 1124 1.6e-14 53.3 62.3 1 7 5.8e-05 0.08 13.8 0.8 2 24 171 193 170 193 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZEB1-201 - 1124 1.6e-14 53.3 62.3 2 7 3.2e-05 0.044 14.6 2.0 1 23 200 222 200 223 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZEB1-201 - 1124 1.6e-14 53.3 62.3 3 7 2.2e-05 0.03 15.2 4.4 1 23 240 262 240 263 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZEB1-201 - 1124 1.6e-14 53.3 62.3 4 7 0.00097 1.3 10.0 1.6 1 22 268 289 268 291 0.90 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZEB1-201 - 1124 1.6e-14 53.3 62.3 5 7 0.00018 0.25 12.3 0.7 1 23 904 926 904 927 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZEB1-201 - 1124 1.6e-14 53.3 62.3 6 7 0.0023 3.2 8.8 6.3 1 23 932 954 932 955 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZEB1-201 - 1124 1.6e-14 53.3 62.3 7 7 0.00015 0.2 12.6 2.3 1 21 960 980 960 982 0.92 C2H2-type zinc finger zf-met PF12874.7 25 ZEB1-201 - 1124 5.1e-09 36.2 46.5 1 6 9.3e-06 0.013 15.9 1.5 1 24 200 223 200 223 0.97 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZEB1-201 - 1124 5.1e-09 36.2 46.5 2 6 0.043 60 4.2 1.8 1 21 240 260 240 262 0.93 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZEB1-201 - 1124 5.1e-09 36.2 46.5 3 6 2.8e-05 0.039 14.4 3.1 1 24 268 291 268 291 0.95 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZEB1-201 - 1124 5.1e-09 36.2 46.5 4 6 0.0006 0.83 10.1 0.3 1 19 904 922 904 924 0.91 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZEB1-201 - 1124 5.1e-09 36.2 46.5 5 6 0.00098 1.3 9.5 1.8 2 21 933 952 932 952 0.94 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZEB1-201 - 1124 5.1e-09 36.2 46.5 6 6 0.0018 2.5 8.6 2.4 1 21 960 980 960 982 0.91 Zinc-finger of C2H2 type zf-Di19 PF05605.12 54 ZEB1-201 - 1124 1.4e-08 34.9 26.2 1 3 8.4e-11 1.2e-07 32.0 1.4 3 52 170 222 168 224 0.84 Drought induced 19 protein (Di19), zinc-binding zf-Di19 PF05605.12 54 ZEB1-201 - 1124 1.4e-08 34.9 26.2 2 3 0.044 60 4.0 5.2 2 50 239 288 238 292 0.74 Drought induced 19 protein (Di19), zinc-binding zf-Di19 PF05605.12 54 ZEB1-201 - 1124 1.4e-08 34.9 26.2 3 3 0.00071 0.98 9.8 4.3 3 52 904 954 902 956 0.78 Drought induced 19 protein (Di19), zinc-binding zf-C2H2_jaz PF12171.8 27 ZEB1-201 - 1124 3.1e-07 30.5 54.8 1 7 0.00098 1.4 9.3 0.1 3 22 171 190 170 190 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZEB1-201 - 1124 3.1e-07 30.5 54.8 2 7 0.00058 0.8 10.1 1.1 2 25 200 223 199 223 0.96 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZEB1-201 - 1124 3.1e-07 30.5 54.8 3 7 0.017 23 5.4 3.3 1 22 239 260 239 260 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZEB1-201 - 1124 3.1e-07 30.5 54.8 4 7 6.8e-06 0.0094 16.2 1.9 2 25 268 291 267 291 0.96 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZEB1-201 - 1124 3.1e-07 30.5 54.8 5 7 3.9e-05 0.054 13.8 1.0 2 21 904 923 903 926 0.91 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZEB1-201 - 1124 3.1e-07 30.5 54.8 6 7 0.0051 7.1 7.1 2.0 2 22 932 952 931 952 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZEB1-201 - 1124 3.1e-07 30.5 54.8 7 7 0.09 1.2e+02 3.1 0.3 4 22 962 980 959 980 0.90 Zinc-finger double-stranded RNA-binding # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZEB1-201.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZEB1-201.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZEB1-201.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZEB1-201.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZEB1-201.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:58:07 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZEB1-202 - 1125 2.2e-29 100.5 56.2 1 7 0.02 28 5.4 0.2 15 26 171 182 163 182 0.85 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZEB1-202 - 1125 2.2e-29 100.5 56.2 2 7 1e-05 0.014 15.8 1.2 1 25 185 211 185 212 0.83 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZEB1-202 - 1125 2.2e-29 100.5 56.2 3 7 3.3e-05 0.046 14.2 2.0 2 26 216 252 215 252 0.82 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZEB1-202 - 1125 2.2e-29 100.5 56.2 4 7 8.5e-11 1.2e-07 31.8 5.1 1 26 255 280 255 280 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZEB1-202 - 1125 2.2e-29 100.5 56.2 5 7 0.061 84 3.9 0.2 14 24 904 914 892 915 0.76 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZEB1-202 - 1125 2.2e-29 100.5 56.2 6 7 5e-09 6.9e-06 26.3 5.0 2 26 920 944 919 944 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZEB1-202 - 1125 2.2e-29 100.5 56.2 7 7 4.8e-11 6.6e-08 32.6 2.5 1 26 947 972 947 972 0.94 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZEB1-202 - 1125 5.4e-25 86.4 66.2 1 7 3.2e-06 0.0044 17.4 1.3 2 23 172 194 171 194 0.95 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZEB1-202 - 1125 5.4e-25 86.4 66.2 2 7 4.9e-06 0.0067 16.8 2.3 1 23 201 223 201 223 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZEB1-202 - 1125 5.4e-25 86.4 66.2 3 7 7.9e-08 0.00011 22.5 5.0 1 23 241 263 241 263 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZEB1-202 - 1125 5.4e-25 86.4 66.2 4 7 8.7e-06 0.012 16.0 1.5 1 21 269 289 269 290 0.95 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZEB1-202 - 1125 5.4e-25 86.4 66.2 5 7 6.4e-05 0.088 13.3 0.8 1 23 905 927 905 927 0.94 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZEB1-202 - 1125 5.4e-25 86.4 66.2 6 7 1.2e-06 0.0016 18.8 7.2 1 23 933 955 933 955 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZEB1-202 - 1125 5.4e-25 86.4 66.2 7 7 6.4e-06 0.0088 16.4 3.2 1 21 961 981 961 982 0.96 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZEB1-202 - 1125 1.6e-14 53.3 62.3 1 7 5.8e-05 0.081 13.8 0.8 2 24 172 194 171 194 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZEB1-202 - 1125 1.6e-14 53.3 62.3 2 7 3.2e-05 0.044 14.6 2.0 1 23 201 223 201 224 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZEB1-202 - 1125 1.6e-14 53.3 62.3 3 7 2.2e-05 0.03 15.2 4.4 1 23 241 263 241 264 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZEB1-202 - 1125 1.6e-14 53.3 62.3 4 7 0.00097 1.3 10.0 1.6 1 22 269 290 269 292 0.90 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZEB1-202 - 1125 1.6e-14 53.3 62.3 5 7 0.00018 0.25 12.3 0.7 1 23 905 927 905 928 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZEB1-202 - 1125 1.6e-14 53.3 62.3 6 7 0.0023 3.2 8.8 6.3 1 23 933 955 933 956 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZEB1-202 - 1125 1.6e-14 53.3 62.3 7 7 0.00015 0.2 12.6 2.3 1 21 961 981 961 983 0.92 C2H2-type zinc finger zf-met PF12874.7 25 ZEB1-202 - 1125 5.1e-09 36.2 46.5 1 6 9.3e-06 0.013 15.9 1.5 1 24 201 224 201 224 0.97 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZEB1-202 - 1125 5.1e-09 36.2 46.5 2 6 0.043 60 4.2 1.8 1 21 241 261 241 263 0.93 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZEB1-202 - 1125 5.1e-09 36.2 46.5 3 6 2.8e-05 0.039 14.4 3.1 1 24 269 292 269 292 0.95 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZEB1-202 - 1125 5.1e-09 36.2 46.5 4 6 0.0006 0.83 10.1 0.3 1 19 905 923 905 925 0.91 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZEB1-202 - 1125 5.1e-09 36.2 46.5 5 6 0.00098 1.4 9.5 1.8 2 21 934 953 933 953 0.94 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZEB1-202 - 1125 5.1e-09 36.2 46.5 6 6 0.0018 2.5 8.6 2.4 1 21 961 981 961 983 0.91 Zinc-finger of C2H2 type zf-Di19 PF05605.12 54 ZEB1-202 - 1125 1.4e-08 34.9 26.2 1 3 8.4e-11 1.2e-07 32.0 1.4 3 52 171 223 169 225 0.84 Drought induced 19 protein (Di19), zinc-binding zf-Di19 PF05605.12 54 ZEB1-202 - 1125 1.4e-08 34.9 26.2 2 3 0.044 60 4.0 5.2 2 50 240 289 239 293 0.74 Drought induced 19 protein (Di19), zinc-binding zf-Di19 PF05605.12 54 ZEB1-202 - 1125 1.4e-08 34.9 26.2 3 3 0.00071 0.98 9.8 4.3 3 52 905 955 903 957 0.78 Drought induced 19 protein (Di19), zinc-binding zf-C2H2_jaz PF12171.8 27 ZEB1-202 - 1125 3.1e-07 30.5 54.8 1 7 0.00098 1.4 9.3 0.1 3 22 172 191 171 191 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZEB1-202 - 1125 3.1e-07 30.5 54.8 2 7 0.00058 0.8 10.1 1.1 2 25 201 224 200 224 0.96 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZEB1-202 - 1125 3.1e-07 30.5 54.8 3 7 0.017 23 5.4 3.3 1 22 240 261 240 261 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZEB1-202 - 1125 3.1e-07 30.5 54.8 4 7 6.8e-06 0.0094 16.2 1.9 2 25 269 292 268 292 0.96 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZEB1-202 - 1125 3.1e-07 30.5 54.8 5 7 3.9e-05 0.054 13.8 1.0 2 21 905 924 904 927 0.91 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZEB1-202 - 1125 3.1e-07 30.5 54.8 6 7 0.0051 7.1 7.1 2.0 2 22 933 953 932 953 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZEB1-202 - 1125 3.1e-07 30.5 54.8 7 7 0.09 1.2e+02 3.1 0.3 4 22 963 981 960 981 0.90 Zinc-finger double-stranded RNA-binding # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZEB1-202.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZEB1-202.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZEB1-202.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZEB1-202.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZEB1-202.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:58:07 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZEB1-203.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZEB1-203.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZEB1-203.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZEB1-203.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZEB1-203.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:58:07 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZEB1-204 - 906 1e-20 73.1 53.4 1 6 0.0036 6.5 7.4 2.8 14 26 21 33 14 33 0.90 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZEB1-204 - 906 1e-20 73.1 53.4 2 6 5.1e-11 9.2e-08 32.2 5.1 1 26 36 61 36 61 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZEB1-204 - 906 1e-20 73.1 53.4 3 6 10 1.8e+04 -5.9 2.0 16 22 312 318 312 319 0.73 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZEB1-204 - 906 1e-20 73.1 53.4 4 6 0.034 61 4.3 0.2 14 24 685 695 672 696 0.75 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZEB1-204 - 906 1e-20 73.1 53.4 5 6 3e-09 5.4e-06 26.6 5.0 2 26 701 725 700 725 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZEB1-204 - 906 1e-20 73.1 53.4 6 6 2.9e-11 5.1e-08 33.0 2.5 1 26 728 753 728 753 0.94 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZEB1-204 - 906 1.6e-18 66.0 47.6 1 5 4.8e-08 8.5e-05 22.8 5.0 1 23 22 44 22 44 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZEB1-204 - 906 1.6e-18 66.0 47.6 2 5 5.3e-06 0.0094 16.4 1.5 1 21 50 70 50 71 0.95 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZEB1-204 - 906 1.6e-18 66.0 47.6 3 5 3.8e-05 0.069 13.6 0.8 1 23 686 708 686 708 0.94 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZEB1-204 - 906 1.6e-18 66.0 47.6 4 5 7e-07 0.0013 19.1 7.2 1 23 714 736 714 736 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZEB1-204 - 906 1.6e-18 66.0 47.6 5 5 3.9e-06 0.0069 16.8 3.2 1 21 742 762 742 763 0.96 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZEB1-204 - 906 1.3e-09 38.1 45.0 1 5 1.3e-05 0.023 15.5 4.4 1 23 22 44 22 45 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZEB1-204 - 906 1.3e-09 38.1 45.0 2 5 0.00058 1 10.3 1.6 1 22 50 71 50 73 0.90 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZEB1-204 - 906 1.3e-09 38.1 45.0 3 5 0.00011 0.19 12.6 0.7 1 23 686 708 686 709 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZEB1-204 - 906 1.3e-09 38.1 45.0 4 5 0.0014 2.5 9.2 6.3 1 23 714 736 714 737 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZEB1-204 - 906 1.3e-09 38.1 45.0 5 5 8.9e-05 0.16 12.9 2.3 1 21 742 762 742 764 0.92 C2H2-type zinc finger # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZEB1-204.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZEB1-204.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZEB1-204.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZEB1-204.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZEB1-204.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:58:08 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZEB1-205 - 1108 2e-29 100.7 56.2 1 7 0.02 28 5.4 0.2 15 26 154 165 146 165 0.85 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZEB1-205 - 1108 2e-29 100.7 56.2 2 7 1e-05 0.014 15.8 1.2 1 25 168 194 168 195 0.83 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZEB1-205 - 1108 2e-29 100.7 56.2 3 7 3.3e-05 0.045 14.2 2.0 2 26 199 235 198 235 0.82 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZEB1-205 - 1108 2e-29 100.7 56.2 4 7 8.4e-11 1.2e-07 31.9 5.1 1 26 238 263 238 263 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZEB1-205 - 1108 2e-29 100.7 56.2 5 7 0.06 83 3.9 0.2 14 24 887 897 875 898 0.76 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZEB1-205 - 1108 2e-29 100.7 56.2 6 7 4.9e-09 6.8e-06 26.3 5.0 2 26 903 927 902 927 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZEB1-205 - 1108 2e-29 100.7 56.2 7 7 4.7e-11 6.5e-08 32.7 2.5 1 26 930 955 930 955 0.94 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZEB1-205 - 1108 4.8e-25 86.6 66.2 1 7 3.1e-06 0.0043 17.4 1.3 2 23 155 177 154 177 0.95 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZEB1-205 - 1108 4.8e-25 86.6 66.2 2 7 4.8e-06 0.0066 16.8 2.3 1 23 184 206 184 206 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZEB1-205 - 1108 4.8e-25 86.6 66.2 3 7 7.8e-08 0.00011 22.5 5.0 1 23 224 246 224 246 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZEB1-205 - 1108 4.8e-25 86.6 66.2 4 7 8.6e-06 0.012 16.0 1.5 1 21 252 272 252 273 0.95 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZEB1-205 - 1108 4.8e-25 86.6 66.2 5 7 6.3e-05 0.086 13.3 0.8 1 23 888 910 888 910 0.94 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZEB1-205 - 1108 4.8e-25 86.6 66.2 6 7 1.1e-06 0.0016 18.8 7.2 1 23 916 938 916 938 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZEB1-205 - 1108 4.8e-25 86.6 66.2 7 7 6.3e-06 0.0087 16.5 3.2 1 21 944 964 944 965 0.96 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZEB1-205 - 1108 1.5e-14 53.5 62.3 1 7 5.7e-05 0.079 13.8 0.8 2 24 155 177 154 177 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZEB1-205 - 1108 1.5e-14 53.5 62.3 2 7 3.2e-05 0.044 14.6 2.0 1 23 184 206 184 207 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZEB1-205 - 1108 1.5e-14 53.5 62.3 3 7 2.1e-05 0.029 15.2 4.4 1 23 224 246 224 247 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZEB1-205 - 1108 1.5e-14 53.5 62.3 4 7 0.00096 1.3 10.0 1.6 1 22 252 273 252 275 0.90 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZEB1-205 - 1108 1.5e-14 53.5 62.3 5 7 0.00018 0.24 12.3 0.7 1 23 888 910 888 911 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZEB1-205 - 1108 1.5e-14 53.5 62.3 6 7 0.0023 3.2 8.8 6.3 1 23 916 938 916 939 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZEB1-205 - 1108 1.5e-14 53.5 62.3 7 7 0.00015 0.2 12.6 2.3 1 21 944 964 944 966 0.92 C2H2-type zinc finger zf-met PF12874.7 25 ZEB1-205 - 1108 4.7e-09 36.3 46.5 1 6 9.1e-06 0.013 15.9 1.5 1 24 184 207 184 207 0.97 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZEB1-205 - 1108 4.7e-09 36.3 46.5 2 6 0.043 59 4.3 1.8 1 21 224 244 224 246 0.93 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZEB1-205 - 1108 4.7e-09 36.3 46.5 3 6 2.8e-05 0.038 14.4 3.1 1 24 252 275 252 275 0.95 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZEB1-205 - 1108 4.7e-09 36.3 46.5 4 6 0.00059 0.81 10.2 0.3 1 19 888 906 888 908 0.91 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZEB1-205 - 1108 4.7e-09 36.3 46.5 5 6 0.00096 1.3 9.5 1.8 2 21 917 936 916 936 0.94 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZEB1-205 - 1108 4.7e-09 36.3 46.5 6 6 0.0018 2.4 8.6 2.4 1 21 944 964 944 966 0.91 Zinc-finger of C2H2 type zf-Di19 PF05605.12 54 ZEB1-205 - 1108 1.3e-08 35.0 26.2 1 3 8.2e-11 1.1e-07 32.0 1.4 3 52 154 206 152 208 0.84 Drought induced 19 protein (Di19), zinc-binding zf-Di19 PF05605.12 54 ZEB1-205 - 1108 1.3e-08 35.0 26.2 2 3 0.043 59 4.1 5.2 2 50 223 272 222 276 0.74 Drought induced 19 protein (Di19), zinc-binding zf-Di19 PF05605.12 54 ZEB1-205 - 1108 1.3e-08 35.0 26.2 3 3 0.0007 0.96 9.8 4.3 3 52 888 938 886 940 0.78 Drought induced 19 protein (Di19), zinc-binding zf-C2H2_jaz PF12171.8 27 ZEB1-205 - 1108 2.7e-07 30.7 54.8 1 7 0.00097 1.3 9.4 0.1 3 22 155 174 154 174 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZEB1-205 - 1108 2.7e-07 30.7 54.8 2 7 0.00057 0.78 10.1 1.1 2 25 184 207 183 207 0.96 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZEB1-205 - 1108 2.7e-07 30.7 54.8 3 7 0.016 23 5.4 3.3 1 22 223 244 223 244 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZEB1-205 - 1108 2.7e-07 30.7 54.8 4 7 6.7e-06 0.0092 16.2 1.9 2 25 252 275 251 275 0.96 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZEB1-205 - 1108 2.7e-07 30.7 54.8 5 7 3.9e-05 0.053 13.8 1.0 2 21 888 907 887 910 0.91 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZEB1-205 - 1108 2.7e-07 30.7 54.8 6 7 0.005 6.9 7.1 2.0 2 22 916 936 915 936 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZEB1-205 - 1108 2.7e-07 30.7 54.8 7 7 0.088 1.2e+02 3.1 0.3 4 22 946 964 943 964 0.90 Zinc-finger double-stranded RNA-binding # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZEB1-205.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZEB1-205.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZEB1-205.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZEB1-205.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZEB1-205.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:58:08 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZEB1-206 - 906 1e-20 73.1 53.4 1 6 0.0036 6.5 7.4 2.8 14 26 21 33 14 33 0.90 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZEB1-206 - 906 1e-20 73.1 53.4 2 6 5.1e-11 9.2e-08 32.2 5.1 1 26 36 61 36 61 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZEB1-206 - 906 1e-20 73.1 53.4 3 6 10 1.8e+04 -5.9 2.0 16 22 312 318 312 319 0.73 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZEB1-206 - 906 1e-20 73.1 53.4 4 6 0.034 61 4.3 0.2 14 24 685 695 672 696 0.75 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZEB1-206 - 906 1e-20 73.1 53.4 5 6 3e-09 5.4e-06 26.6 5.0 2 26 701 725 700 725 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZEB1-206 - 906 1e-20 73.1 53.4 6 6 2.9e-11 5.1e-08 33.0 2.5 1 26 728 753 728 753 0.94 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZEB1-206 - 906 1.6e-18 66.0 47.6 1 5 4.8e-08 8.5e-05 22.8 5.0 1 23 22 44 22 44 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZEB1-206 - 906 1.6e-18 66.0 47.6 2 5 5.3e-06 0.0094 16.4 1.5 1 21 50 70 50 71 0.95 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZEB1-206 - 906 1.6e-18 66.0 47.6 3 5 3.8e-05 0.069 13.6 0.8 1 23 686 708 686 708 0.94 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZEB1-206 - 906 1.6e-18 66.0 47.6 4 5 7e-07 0.0013 19.1 7.2 1 23 714 736 714 736 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZEB1-206 - 906 1.6e-18 66.0 47.6 5 5 3.9e-06 0.0069 16.8 3.2 1 21 742 762 742 763 0.96 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZEB1-206 - 906 1.3e-09 38.1 45.0 1 5 1.3e-05 0.023 15.5 4.4 1 23 22 44 22 45 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZEB1-206 - 906 1.3e-09 38.1 45.0 2 5 0.00058 1 10.3 1.6 1 22 50 71 50 73 0.90 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZEB1-206 - 906 1.3e-09 38.1 45.0 3 5 0.00011 0.19 12.6 0.7 1 23 686 708 686 709 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZEB1-206 - 906 1.3e-09 38.1 45.0 4 5 0.0014 2.5 9.2 6.3 1 23 714 736 714 737 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZEB1-206 - 906 1.3e-09 38.1 45.0 5 5 8.9e-05 0.16 12.9 2.3 1 21 742 762 742 764 0.92 C2H2-type zinc finger # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZEB1-206.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZEB1-206.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZEB1-206.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZEB1-206.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZEB1-206.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:58:09 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZEB1-207.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZEB1-207.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZEB1-207.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZEB1-207.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZEB1-207.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:58:09 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZEB1-208 - 1057 1.3e-29 101.3 56.2 1 7 0.022 26 5.5 0.2 15 26 103 114 95 114 0.85 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZEB1-208 - 1057 1.3e-29 101.3 56.2 2 7 1.1e-05 0.013 15.9 1.2 1 25 117 143 117 144 0.83 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZEB1-208 - 1057 1.3e-29 101.3 56.2 3 7 3.6e-05 0.043 14.3 2.0 2 26 148 184 147 184 0.82 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZEB1-208 - 1057 1.3e-29 101.3 56.2 4 7 9.2e-11 1.1e-07 31.9 5.1 1 26 187 212 187 212 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZEB1-208 - 1057 1.3e-29 101.3 56.2 5 7 0.061 73 4.1 0.2 14 24 836 846 823 847 0.75 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZEB1-208 - 1057 1.3e-29 101.3 56.2 6 7 5.4e-09 6.4e-06 26.4 5.0 2 26 852 876 851 876 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZEB1-208 - 1057 1.3e-29 101.3 56.2 7 7 5.1e-11 6.1e-08 32.7 2.5 1 26 879 904 879 904 0.94 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZEB1-208 - 1057 3.2e-25 87.1 66.2 1 7 3.4e-06 0.0041 17.5 1.3 2 23 104 126 103 126 0.95 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZEB1-208 - 1057 3.2e-25 87.1 66.2 2 7 5.2e-06 0.0063 16.9 2.3 1 23 133 155 133 155 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZEB1-208 - 1057 3.2e-25 87.1 66.2 3 7 8.5e-08 0.0001 22.6 5.0 1 23 173 195 173 195 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZEB1-208 - 1057 3.2e-25 87.1 66.2 4 7 9.4e-06 0.011 16.1 1.5 1 21 201 221 201 222 0.95 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZEB1-208 - 1057 3.2e-25 87.1 66.2 5 7 6.9e-05 0.082 13.4 0.8 1 23 837 859 837 859 0.94 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZEB1-208 - 1057 3.2e-25 87.1 66.2 6 7 1.3e-06 0.0015 18.9 7.2 1 23 865 887 865 887 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZEB1-208 - 1057 3.2e-25 87.1 66.2 7 7 6.9e-06 0.0082 16.5 3.2 1 21 893 913 893 914 0.96 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZEB1-208 - 1057 9.8e-15 54.0 62.3 1 7 6.3e-05 0.075 13.9 0.8 2 24 104 126 103 126 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZEB1-208 - 1057 9.8e-15 54.0 62.3 2 7 3.5e-05 0.041 14.7 2.0 1 23 133 155 133 156 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZEB1-208 - 1057 9.8e-15 54.0 62.3 3 7 2.3e-05 0.028 15.3 4.4 1 23 173 195 173 196 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZEB1-208 - 1057 9.8e-15 54.0 62.3 4 7 0.001 1.2 10.1 1.6 1 22 201 222 201 224 0.90 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZEB1-208 - 1057 9.8e-15 54.0 62.3 5 7 0.00019 0.23 12.4 0.7 1 23 837 859 837 860 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZEB1-208 - 1057 9.8e-15 54.0 62.3 6 7 0.0025 3 8.9 6.3 1 23 865 887 865 888 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZEB1-208 - 1057 9.8e-15 54.0 62.3 7 7 0.00016 0.19 12.7 2.3 1 21 893 913 893 915 0.92 C2H2-type zinc finger zf-met PF12874.7 25 ZEB1-208 - 1057 3.3e-09 36.8 46.5 1 6 1e-05 0.012 16.0 1.5 1 24 133 156 133 156 0.97 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZEB1-208 - 1057 3.3e-09 36.8 46.5 2 6 0.047 56 4.3 1.8 1 21 173 193 173 195 0.93 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZEB1-208 - 1057 3.3e-09 36.8 46.5 3 6 3e-05 0.036 14.5 3.1 1 24 201 224 201 224 0.95 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZEB1-208 - 1057 3.3e-09 36.8 46.5 4 6 0.00065 0.77 10.2 0.3 1 19 837 855 837 857 0.91 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZEB1-208 - 1057 3.3e-09 36.8 46.5 5 6 0.0011 1.3 9.6 1.8 2 21 866 885 865 885 0.94 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZEB1-208 - 1057 3.3e-09 36.8 46.5 6 6 0.0019 2.3 8.7 2.4 1 21 893 913 893 915 0.91 Zinc-finger of C2H2 type zf-Di19 PF05605.12 54 ZEB1-208 - 1057 1.1e-08 35.2 26.2 1 3 9e-11 1.1e-07 32.1 1.4 3 52 103 155 101 157 0.84 Drought induced 19 protein (Di19), zinc-binding zf-Di19 PF05605.12 54 ZEB1-208 - 1057 1.1e-08 35.2 26.2 2 3 0.047 56 4.1 5.2 2 50 172 221 171 225 0.75 Drought induced 19 protein (Di19), zinc-binding zf-Di19 PF05605.12 54 ZEB1-208 - 1057 1.1e-08 35.2 26.2 3 3 0.00076 0.91 9.9 4.3 3 52 837 887 835 889 0.78 Drought induced 19 protein (Di19), zinc-binding zf-C2H2_jaz PF12171.8 27 ZEB1-208 - 1057 1.9e-07 31.2 54.8 1 7 0.0011 1.3 9.4 0.1 3 22 104 123 103 123 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZEB1-208 - 1057 1.9e-07 31.2 54.8 2 7 0.00062 0.74 10.2 1.1 2 25 133 156 132 156 0.96 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZEB1-208 - 1057 1.9e-07 31.2 54.8 3 7 0.018 22 5.5 3.3 1 22 172 193 172 193 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZEB1-208 - 1057 1.9e-07 31.2 54.8 4 7 7.3e-06 0.0088 16.3 1.9 2 25 201 224 200 224 0.96 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZEB1-208 - 1057 1.9e-07 31.2 54.8 5 7 4.2e-05 0.051 13.9 1.0 2 21 837 856 836 859 0.91 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZEB1-208 - 1057 1.9e-07 31.2 54.8 6 7 0.0055 6.6 7.1 2.0 2 22 865 885 864 885 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZEB1-208 - 1057 1.9e-07 31.2 54.8 7 7 0.097 1.2e+02 3.2 0.3 4 22 895 913 892 913 0.90 Zinc-finger double-stranded RNA-binding # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZEB1-208.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZEB1-208.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZEB1-208.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZEB1-208.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZEB1-208.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:58:10 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZEB1-209 - 906 1e-20 73.1 53.4 1 6 0.0036 6.5 7.4 2.8 14 26 21 33 14 33 0.90 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZEB1-209 - 906 1e-20 73.1 53.4 2 6 5.1e-11 9.2e-08 32.2 5.1 1 26 36 61 36 61 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZEB1-209 - 906 1e-20 73.1 53.4 3 6 10 1.8e+04 -5.9 2.0 16 22 312 318 312 319 0.73 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZEB1-209 - 906 1e-20 73.1 53.4 4 6 0.034 61 4.3 0.2 14 24 685 695 672 696 0.75 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZEB1-209 - 906 1e-20 73.1 53.4 5 6 3e-09 5.4e-06 26.6 5.0 2 26 701 725 700 725 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZEB1-209 - 906 1e-20 73.1 53.4 6 6 2.9e-11 5.1e-08 33.0 2.5 1 26 728 753 728 753 0.94 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZEB1-209 - 906 1.6e-18 66.0 47.6 1 5 4.8e-08 8.5e-05 22.8 5.0 1 23 22 44 22 44 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZEB1-209 - 906 1.6e-18 66.0 47.6 2 5 5.3e-06 0.0094 16.4 1.5 1 21 50 70 50 71 0.95 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZEB1-209 - 906 1.6e-18 66.0 47.6 3 5 3.8e-05 0.069 13.6 0.8 1 23 686 708 686 708 0.94 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZEB1-209 - 906 1.6e-18 66.0 47.6 4 5 7e-07 0.0013 19.1 7.2 1 23 714 736 714 736 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZEB1-209 - 906 1.6e-18 66.0 47.6 5 5 3.9e-06 0.0069 16.8 3.2 1 21 742 762 742 763 0.96 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZEB1-209 - 906 1.3e-09 38.1 45.0 1 5 1.3e-05 0.023 15.5 4.4 1 23 22 44 22 45 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZEB1-209 - 906 1.3e-09 38.1 45.0 2 5 0.00058 1 10.3 1.6 1 22 50 71 50 73 0.90 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZEB1-209 - 906 1.3e-09 38.1 45.0 3 5 0.00011 0.19 12.6 0.7 1 23 686 708 686 709 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZEB1-209 - 906 1.3e-09 38.1 45.0 4 5 0.0014 2.5 9.2 6.3 1 23 714 736 714 737 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZEB1-209 - 906 1.3e-09 38.1 45.0 5 5 8.9e-05 0.16 12.9 2.3 1 21 742 762 742 764 0.92 C2H2-type zinc finger # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZEB1-209.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZEB1-209.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZEB1-209.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZEB1-209.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZEB1-209.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:58:10 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZEB1-210.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZEB1-210.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZEB1-210.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZEB1-210.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZEB1-210.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:58:11 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZEB1-211.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZEB1-211.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZEB1-211.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZEB1-211.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZEB1-211.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:58:11 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZEB1-212.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZEB1-212.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZEB1-212.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZEB1-212.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZEB1-212.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:58:11 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZEB1-213.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZEB1-213.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZEB1-213.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZEB1-213.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZEB1-213.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:58:12 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZEB1-214.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZEB1-214.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZEB1-214.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZEB1-214.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZEB1-214.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:58:12 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZEB1-215.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZEB1-215.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZEB1-215.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZEB1-215.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZEB1-215.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:58:12 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZEB1-216.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZEB1-216.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZEB1-216.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZEB1-216.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZEB1-216.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:58:13 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZEB1-217.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZEB1-217.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZEB1-217.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZEB1-217.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZEB1-217.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:58:13 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZEB1-218.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZEB1-218.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZEB1-218.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZEB1-218.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZEB1-218.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:58:13 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZEB1-219 - 1104 1.9e-29 100.7 56.2 1 7 0.02 27 5.4 0.2 15 26 150 161 142 161 0.85 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZEB1-219 - 1104 1.9e-29 100.7 56.2 2 7 1e-05 0.014 15.8 1.2 1 25 164 190 164 191 0.83 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZEB1-219 - 1104 1.9e-29 100.7 56.2 3 7 3.3e-05 0.045 14.2 2.0 2 26 195 231 194 231 0.82 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZEB1-219 - 1104 1.9e-29 100.7 56.2 4 7 8.3e-11 1.1e-07 31.9 5.1 1 26 234 259 234 259 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZEB1-219 - 1104 1.9e-29 100.7 56.2 5 7 0.06 83 3.9 0.2 14 24 883 893 871 894 0.76 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZEB1-219 - 1104 1.9e-29 100.7 56.2 6 7 4.9e-09 6.8e-06 26.3 5.0 2 26 899 923 898 923 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZEB1-219 - 1104 1.9e-29 100.7 56.2 7 7 4.7e-11 6.4e-08 32.7 2.5 1 26 926 951 926 951 0.94 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZEB1-219 - 1104 4.6e-25 86.6 66.2 1 7 3.1e-06 0.0043 17.4 1.3 2 23 151 173 150 173 0.95 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZEB1-219 - 1104 4.6e-25 86.6 66.2 2 7 4.8e-06 0.0066 16.8 2.3 1 23 180 202 180 202 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZEB1-219 - 1104 4.6e-25 86.6 66.2 3 7 7.7e-08 0.00011 22.5 5.0 1 23 220 242 220 242 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZEB1-219 - 1104 4.6e-25 86.6 66.2 4 7 8.5e-06 0.012 16.1 1.5 1 21 248 268 248 269 0.95 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZEB1-219 - 1104 4.6e-25 86.6 66.2 5 7 6.2e-05 0.086 13.3 0.8 1 23 884 906 884 906 0.94 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZEB1-219 - 1104 4.6e-25 86.6 66.2 6 7 1.1e-06 0.0016 18.8 7.2 1 23 912 934 912 934 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZEB1-219 - 1104 4.6e-25 86.6 66.2 7 7 6.3e-06 0.0087 16.5 3.2 1 21 940 960 940 961 0.96 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZEB1-219 - 1104 1.4e-14 53.5 62.3 1 7 5.7e-05 0.079 13.8 0.8 2 24 151 173 150 173 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZEB1-219 - 1104 1.4e-14 53.5 62.3 2 7 3.2e-05 0.044 14.6 2.0 1 23 180 202 180 203 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZEB1-219 - 1104 1.4e-14 53.5 62.3 3 7 2.1e-05 0.029 15.2 4.4 1 23 220 242 220 243 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZEB1-219 - 1104 1.4e-14 53.5 62.3 4 7 0.00095 1.3 10.0 1.6 1 22 248 269 248 271 0.90 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZEB1-219 - 1104 1.4e-14 53.5 62.3 5 7 0.00018 0.24 12.3 0.7 1 23 884 906 884 907 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZEB1-219 - 1104 1.4e-14 53.5 62.3 6 7 0.0023 3.2 8.9 6.3 1 23 912 934 912 935 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZEB1-219 - 1104 1.4e-14 53.5 62.3 7 7 0.00014 0.2 12.6 2.3 1 21 940 960 940 962 0.92 C2H2-type zinc finger zf-met PF12874.7 25 ZEB1-219 - 1104 4.5e-09 36.4 46.5 1 6 9.1e-06 0.013 15.9 1.5 1 24 180 203 180 203 0.97 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZEB1-219 - 1104 4.5e-09 36.4 46.5 2 6 0.042 58 4.3 1.8 1 21 220 240 220 242 0.93 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZEB1-219 - 1104 4.5e-09 36.4 46.5 3 6 2.8e-05 0.038 14.4 3.1 1 24 248 271 248 271 0.95 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZEB1-219 - 1104 4.5e-09 36.4 46.5 4 6 0.00059 0.81 10.2 0.3 1 19 884 902 884 904 0.91 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZEB1-219 - 1104 4.5e-09 36.4 46.5 5 6 0.00096 1.3 9.5 1.8 2 21 913 932 912 932 0.94 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZEB1-219 - 1104 4.5e-09 36.4 46.5 6 6 0.0018 2.4 8.6 2.4 1 21 940 960 940 962 0.91 Zinc-finger of C2H2 type zf-Di19 PF05605.12 54 ZEB1-219 - 1104 1.3e-08 35.0 26.2 1 3 8.2e-11 1.1e-07 32.0 1.4 3 52 150 202 148 204 0.84 Drought induced 19 protein (Di19), zinc-binding zf-Di19 PF05605.12 54 ZEB1-219 - 1104 1.3e-08 35.0 26.2 2 3 0.043 59 4.1 5.2 2 50 219 268 218 272 0.74 Drought induced 19 protein (Di19), zinc-binding zf-Di19 PF05605.12 54 ZEB1-219 - 1104 1.3e-08 35.0 26.2 3 3 0.0007 0.96 9.8 4.3 3 52 884 934 882 936 0.78 Drought induced 19 protein (Di19), zinc-binding zf-C2H2_jaz PF12171.8 27 ZEB1-219 - 1104 2.7e-07 30.7 54.8 1 7 0.00096 1.3 9.4 0.1 3 22 151 170 150 170 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZEB1-219 - 1104 2.7e-07 30.7 54.8 2 7 0.00057 0.78 10.1 1.1 2 25 180 203 179 203 0.96 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZEB1-219 - 1104 2.7e-07 30.7 54.8 3 7 0.016 23 5.4 3.3 1 22 219 240 219 240 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZEB1-219 - 1104 2.7e-07 30.7 54.8 4 7 6.7e-06 0.0092 16.2 1.9 2 25 248 271 247 271 0.96 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZEB1-219 - 1104 2.7e-07 30.7 54.8 5 7 3.8e-05 0.053 13.8 1.0 2 21 884 903 883 906 0.91 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZEB1-219 - 1104 2.7e-07 30.7 54.8 6 7 0.005 6.9 7.1 2.0 2 22 912 932 911 932 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZEB1-219 - 1104 2.7e-07 30.7 54.8 7 7 0.088 1.2e+02 3.1 0.3 4 22 942 960 939 960 0.90 Zinc-finger double-stranded RNA-binding # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZEB1-219.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZEB1-219.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZEB1-219.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZEB1-219.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZEB1-219.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:58:14 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZEB1-220.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZEB1-220.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZEB1-220.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZEB1-220.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZEB1-220.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:58:14 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZEB1-221.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZEB1-221.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZEB1-221.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZEB1-221.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZEB1-221.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:58:15 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZEB1-222.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZEB1-222.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZEB1-222.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZEB1-222.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZEB1-222.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:58:15 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZEB1-223.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZEB1-223.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZEB1-223.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZEB1-223.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZEB1-223.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:58:15 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZEB1-224.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZEB1-224.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZEB1-224.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZEB1-224.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZEB1-224.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:58:16 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZEB1-225.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZEB1-225.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZEB1-225.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZEB1-225.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZEB1-225.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:58:16 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZEB2-201 - 1213 1.8e-31 107.1 60.7 1 8 0.023 32 5.2 0.1 15 26 210 221 202 221 0.85 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZEB2-201 - 1213 1.8e-31 107.1 60.7 2 8 5.5e-06 0.0076 16.6 1.6 1 25 224 250 224 251 0.77 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZEB2-201 - 1213 1.8e-31 107.1 60.7 3 8 5.7e-06 0.0079 16.6 0.5 2 26 255 292 254 292 0.80 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZEB2-201 - 1213 1.8e-31 107.1 60.7 4 8 9.3e-11 1.3e-07 31.7 5.1 1 26 295 320 295 320 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZEB2-201 - 1213 1.8e-31 107.1 60.7 5 8 0.012 17 6.0 0.3 8 24 573 589 570 589 0.86 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZEB2-201 - 1213 1.8e-31 107.1 60.7 6 8 0.0038 5.2 7.7 0.3 14 24 997 1007 987 1009 0.77 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZEB2-201 - 1213 1.8e-31 107.1 60.7 7 8 2.6e-09 3.5e-06 27.2 5.4 2 26 1013 1037 1012 1037 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZEB2-201 - 1213 1.8e-31 107.1 60.7 8 8 6.5e-10 9e-07 29.1 2.7 1 26 1040 1065 1040 1065 0.93 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZEB2-201 - 1213 7.2e-25 86.0 72.9 1 8 1.3e-06 0.0018 18.6 1.0 2 23 211 233 210 233 0.95 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZEB2-201 - 1213 7.2e-25 86.0 72.9 2 8 7.6e-07 0.001 19.4 1.2 1 23 240 262 240 262 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZEB2-201 - 1213 7.2e-25 86.0 72.9 3 8 8.6e-08 0.00012 22.3 5.0 1 23 281 303 281 303 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZEB2-201 - 1213 7.2e-25 86.0 72.9 4 8 9.5e-06 0.013 15.9 1.5 1 21 309 329 309 330 0.95 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZEB2-201 - 1213 7.2e-25 86.0 72.9 5 8 0.022 30 5.3 0.5 1 21 580 600 580 601 0.90 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZEB2-201 - 1213 7.2e-25 86.0 72.9 6 8 2.5e-05 0.034 14.6 1.3 1 23 998 1020 998 1020 0.94 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZEB2-201 - 1213 7.2e-25 86.0 72.9 7 8 9.9e-05 0.14 12.7 8.7 1 23 1026 1048 1026 1048 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZEB2-201 - 1213 7.2e-25 86.0 72.9 8 8 7e-06 0.0096 16.3 3.2 1 21 1054 1074 1054 1075 0.96 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZEB2-201 - 1213 9.6e-16 57.1 69.7 1 8 4.1e-05 0.056 14.3 0.6 2 24 211 233 210 233 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZEB2-201 - 1213 9.6e-16 57.1 69.7 2 8 4.6e-06 0.0064 17.2 1.2 1 23 240 262 240 263 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZEB2-201 - 1213 9.6e-16 57.1 69.7 3 8 2.3e-05 0.032 15.0 4.4 1 23 281 303 281 304 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZEB2-201 - 1213 9.6e-16 57.1 69.7 4 8 0.0011 1.5 9.9 1.6 1 22 309 330 309 332 0.90 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZEB2-201 - 1213 9.6e-16 57.1 69.7 5 8 0.0058 7.9 7.6 0.6 1 21 580 600 580 601 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZEB2-201 - 1213 9.6e-16 57.1 69.7 6 8 5.8e-05 0.08 13.8 1.0 1 23 998 1020 998 1021 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZEB2-201 - 1213 9.6e-16 57.1 69.7 7 8 0.038 52 5.1 7.7 1 23 1026 1048 1026 1049 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZEB2-201 - 1213 9.6e-16 57.1 69.7 8 8 0.00016 0.22 12.4 2.3 1 21 1054 1074 1054 1076 0.92 C2H2-type zinc finger zf-Di19 PF05605.12 54 ZEB2-201 - 1213 1.8e-08 34.5 1.9 1 4 1.3e-11 1.8e-08 34.5 1.9 3 51 210 261 208 269 0.79 Drought induced 19 protein (Di19), zinc-binding zf-Di19 PF05605.12 54 ZEB2-201 - 1213 1.8e-08 34.5 1.9 2 4 0.048 66 3.9 5.2 2 50 280 329 279 333 0.74 Drought induced 19 protein (Di19), zinc-binding zf-Di19 PF05605.12 54 ZEB2-201 - 1213 1.8e-08 34.5 1.9 3 4 6.3 8.7e+03 -2.9 1.2 3 12 580 589 578 591 0.85 Drought induced 19 protein (Di19), zinc-binding zf-Di19 PF05605.12 54 ZEB2-201 - 1213 1.8e-08 34.5 1.9 4 4 0.006 8.2 6.8 5.0 3 51 998 1047 996 1050 0.74 Drought induced 19 protein (Di19), zinc-binding zf-C2H2_jaz PF12171.8 27 ZEB2-201 - 1213 7.3e-08 32.5 56.3 1 9 0.00014 0.19 12.0 0.0 3 22 211 230 210 230 0.95 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZEB2-201 - 1213 7.3e-08 32.5 56.3 2 9 0.002 2.8 8.3 0.2 2 25 240 263 239 263 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZEB2-201 - 1213 7.3e-08 32.5 56.3 3 9 0.018 25 5.3 3.3 1 22 280 301 280 301 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZEB2-201 - 1213 7.3e-08 32.5 56.3 4 9 7.4e-06 0.01 16.1 1.9 2 25 309 332 308 332 0.96 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZEB2-201 - 1213 7.3e-08 32.5 56.3 5 9 0.33 4.5e+02 1.3 0.0 2 21 580 599 579 600 0.80 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZEB2-201 - 1213 7.3e-08 32.5 56.3 6 9 1.1 1.5e+03 -0.4 0.4 9 19 866 876 865 876 0.91 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZEB2-201 - 1213 7.3e-08 32.5 56.3 7 9 1.9e-05 0.026 14.8 1.0 2 21 998 1017 997 1020 0.91 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZEB2-201 - 1213 7.3e-08 32.5 56.3 8 9 0.14 2e+02 2.4 4.7 4 20 1028 1044 1025 1044 0.89 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZEB2-201 - 1213 7.3e-08 32.5 56.3 9 9 0.098 1.3e+02 3.0 0.3 4 22 1056 1074 1053 1074 0.90 Zinc-finger double-stranded RNA-binding zf-met PF12874.7 25 ZEB2-201 - 1213 6.6e-07 29.5 54.5 1 8 0.42 5.9e+02 1.1 0.0 2 20 211 229 210 230 0.90 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZEB2-201 - 1213 6.6e-07 29.5 54.5 2 8 9.7e-05 0.13 12.7 0.4 1 24 240 263 240 263 0.91 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZEB2-201 - 1213 6.6e-07 29.5 54.5 3 8 0.047 65 4.1 1.8 1 21 281 301 281 303 0.93 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZEB2-201 - 1213 6.6e-07 29.5 54.5 4 8 3.1e-05 0.042 14.2 3.1 1 24 309 332 309 332 0.95 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZEB2-201 - 1213 6.6e-07 29.5 54.5 5 8 0.22 3e+02 2.0 0.0 1 20 580 599 580 600 0.90 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZEB2-201 - 1213 6.6e-07 29.5 54.5 6 8 0.00015 0.21 12.0 0.4 1 19 998 1016 998 1018 0.92 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZEB2-201 - 1213 6.6e-07 29.5 54.5 7 8 0.18 2.5e+02 2.2 6.9 2 22 1027 1045 1026 1048 0.88 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZEB2-201 - 1213 6.6e-07 29.5 54.5 8 8 0.002 2.7 8.5 2.4 1 21 1054 1074 1054 1076 0.91 Zinc-finger of C2H2 type # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZEB2-201.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZEB2-201.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZEB2-201.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZEB2-201.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZEB2-201.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:58:16 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZEB2-202.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZEB2-202.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZEB2-202.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZEB2-202.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZEB2-202.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:58:17 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZEB2-203.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZEB2-203.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZEB2-203.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZEB2-203.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZEB2-203.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:58:17 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZEB2-204 - 1214 1.9e-31 107.1 60.7 1 8 0.023 32 5.2 0.1 15 26 211 222 203 222 0.85 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZEB2-204 - 1214 1.9e-31 107.1 60.7 2 8 5.5e-06 0.0076 16.6 1.6 1 25 225 251 225 252 0.77 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZEB2-204 - 1214 1.9e-31 107.1 60.7 3 8 5.7e-06 0.0079 16.6 0.5 2 26 256 293 255 293 0.80 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZEB2-204 - 1214 1.9e-31 107.1 60.7 4 8 9.3e-11 1.3e-07 31.7 5.1 1 26 296 321 296 321 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZEB2-204 - 1214 1.9e-31 107.1 60.7 5 8 0.012 17 6.0 0.3 8 24 574 590 571 590 0.86 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZEB2-204 - 1214 1.9e-31 107.1 60.7 6 8 0.0038 5.2 7.7 0.3 14 24 998 1008 988 1010 0.77 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZEB2-204 - 1214 1.9e-31 107.1 60.7 7 8 2.6e-09 3.5e-06 27.2 5.4 2 26 1014 1038 1013 1038 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZEB2-204 - 1214 1.9e-31 107.1 60.7 8 8 6.5e-10 9e-07 29.1 2.7 1 26 1041 1066 1041 1066 0.93 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZEB2-204 - 1214 7.2e-25 86.0 72.9 1 8 1.3e-06 0.0018 18.6 1.0 2 23 212 234 211 234 0.95 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZEB2-204 - 1214 7.2e-25 86.0 72.9 2 8 7.6e-07 0.001 19.4 1.2 1 23 241 263 241 263 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZEB2-204 - 1214 7.2e-25 86.0 72.9 3 8 8.6e-08 0.00012 22.3 5.0 1 23 282 304 282 304 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZEB2-204 - 1214 7.2e-25 86.0 72.9 4 8 9.5e-06 0.013 15.9 1.5 1 21 310 330 310 331 0.95 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZEB2-204 - 1214 7.2e-25 86.0 72.9 5 8 0.022 30 5.3 0.5 1 21 581 601 581 602 0.90 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZEB2-204 - 1214 7.2e-25 86.0 72.9 6 8 2.5e-05 0.034 14.6 1.3 1 23 999 1021 999 1021 0.94 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZEB2-204 - 1214 7.2e-25 86.0 72.9 7 8 9.9e-05 0.14 12.7 8.7 1 23 1027 1049 1027 1049 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZEB2-204 - 1214 7.2e-25 86.0 72.9 8 8 7e-06 0.0096 16.3 3.2 1 21 1055 1075 1055 1076 0.96 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZEB2-204 - 1214 9.7e-16 57.1 69.7 1 8 4.1e-05 0.056 14.3 0.6 2 24 212 234 211 234 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZEB2-204 - 1214 9.7e-16 57.1 69.7 2 8 4.6e-06 0.0064 17.2 1.2 1 23 241 263 241 264 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZEB2-204 - 1214 9.7e-16 57.1 69.7 3 8 2.4e-05 0.032 15.0 4.4 1 23 282 304 282 305 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZEB2-204 - 1214 9.7e-16 57.1 69.7 4 8 0.0011 1.5 9.9 1.6 1 22 310 331 310 333 0.90 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZEB2-204 - 1214 9.7e-16 57.1 69.7 5 8 0.0058 7.9 7.6 0.6 1 21 581 601 581 602 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZEB2-204 - 1214 9.7e-16 57.1 69.7 6 8 5.8e-05 0.08 13.8 1.0 1 23 999 1021 999 1022 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZEB2-204 - 1214 9.7e-16 57.1 69.7 7 8 0.038 52 5.1 7.7 1 23 1027 1049 1027 1050 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZEB2-204 - 1214 9.7e-16 57.1 69.7 8 8 0.00016 0.22 12.4 2.3 1 21 1055 1075 1055 1077 0.92 C2H2-type zinc finger zf-Di19 PF05605.12 54 ZEB2-204 - 1214 1.8e-08 34.5 1.9 1 4 1.3e-11 1.8e-08 34.5 1.9 3 51 211 262 209 270 0.79 Drought induced 19 protein (Di19), zinc-binding zf-Di19 PF05605.12 54 ZEB2-204 - 1214 1.8e-08 34.5 1.9 2 4 0.048 66 3.9 5.2 2 50 281 330 280 334 0.74 Drought induced 19 protein (Di19), zinc-binding zf-Di19 PF05605.12 54 ZEB2-204 - 1214 1.8e-08 34.5 1.9 3 4 6.3 8.7e+03 -2.9 1.2 3 12 581 590 579 592 0.85 Drought induced 19 protein (Di19), zinc-binding zf-Di19 PF05605.12 54 ZEB2-204 - 1214 1.8e-08 34.5 1.9 4 4 0.006 8.2 6.8 5.0 3 51 999 1048 997 1051 0.74 Drought induced 19 protein (Di19), zinc-binding zf-C2H2_jaz PF12171.8 27 ZEB2-204 - 1214 7.4e-08 32.5 56.3 1 9 0.00014 0.19 12.0 0.0 3 22 212 231 211 231 0.95 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZEB2-204 - 1214 7.4e-08 32.5 56.3 2 9 0.002 2.8 8.3 0.2 2 25 241 264 240 264 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZEB2-204 - 1214 7.4e-08 32.5 56.3 3 9 0.018 25 5.3 3.3 1 22 281 302 281 302 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZEB2-204 - 1214 7.4e-08 32.5 56.3 4 9 7.4e-06 0.01 16.1 1.9 2 25 310 333 309 333 0.96 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZEB2-204 - 1214 7.4e-08 32.5 56.3 5 9 0.33 4.5e+02 1.3 0.0 2 21 581 600 580 601 0.80 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZEB2-204 - 1214 7.4e-08 32.5 56.3 6 9 1.1 1.5e+03 -0.4 0.4 9 19 867 877 866 877 0.91 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZEB2-204 - 1214 7.4e-08 32.5 56.3 7 9 1.9e-05 0.026 14.8 1.0 2 21 999 1018 998 1021 0.91 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZEB2-204 - 1214 7.4e-08 32.5 56.3 8 9 0.15 2e+02 2.4 4.7 4 20 1029 1045 1026 1045 0.89 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZEB2-204 - 1214 7.4e-08 32.5 56.3 9 9 0.098 1.3e+02 3.0 0.3 4 22 1057 1075 1054 1075 0.90 Zinc-finger double-stranded RNA-binding zf-met PF12874.7 25 ZEB2-204 - 1214 6.7e-07 29.5 54.5 1 8 0.43 5.9e+02 1.1 0.0 2 20 212 230 211 231 0.90 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZEB2-204 - 1214 6.7e-07 29.5 54.5 2 8 9.7e-05 0.13 12.7 0.4 1 24 241 264 241 264 0.91 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZEB2-204 - 1214 6.7e-07 29.5 54.5 3 8 0.047 65 4.1 1.8 1 21 282 302 282 304 0.93 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZEB2-204 - 1214 6.7e-07 29.5 54.5 4 8 3.1e-05 0.042 14.2 3.1 1 24 310 333 310 333 0.95 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZEB2-204 - 1214 6.7e-07 29.5 54.5 5 8 0.22 3e+02 2.0 0.0 1 20 581 600 581 601 0.90 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZEB2-204 - 1214 6.7e-07 29.5 54.5 6 8 0.00015 0.21 12.0 0.4 1 19 999 1017 999 1019 0.92 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZEB2-204 - 1214 6.7e-07 29.5 54.5 7 8 0.18 2.6e+02 2.2 6.9 2 22 1028 1046 1027 1049 0.88 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZEB2-204 - 1214 6.7e-07 29.5 54.5 8 8 0.002 2.7 8.5 2.4 1 21 1055 1075 1055 1077 0.91 Zinc-finger of C2H2 type # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZEB2-204.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZEB2-204.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZEB2-204.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZEB2-204.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZEB2-204.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:58:17 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-C2H2 PF00096.26 23 ZEB2-205 - 220 4.2e-16 58.4 21.2 1 3 3.5e-07 0.00022 21.5 1.0 2 23 125 147 124 147 0.95 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZEB2-205 - 220 4.2e-16 58.4 21.2 2 3 2.1e-07 0.00013 22.2 1.2 1 23 154 176 154 176 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZEB2-205 - 220 4.2e-16 58.4 21.2 3 3 2.3e-08 1.5e-05 25.2 5.0 1 23 195 217 195 217 0.98 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZEB2-205 - 220 6.2e-12 45.3 19.8 1 3 1.1e-05 0.0069 17.1 0.6 2 24 125 147 124 147 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZEB2-205 - 220 6.2e-12 45.3 19.8 2 3 1.2e-06 0.00078 20.1 1.2 1 23 154 176 154 177 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZEB2-205 - 220 6.2e-12 45.3 19.8 3 3 6.2e-06 0.004 17.9 4.5 1 23 195 217 195 218 0.96 C2H2-type zinc finger zf-Di19 PF05605.12 54 ZEB2-205 - 220 7.3e-10 39.0 6.0 1 2 2.5e-12 1.6e-09 37.9 1.9 3 51 124 175 122 185 0.79 Drought induced 19 protein (Di19), zinc-binding zf-Di19 PF05605.12 54 ZEB2-205 - 220 7.3e-10 39.0 6.0 2 2 0.25 1.6e+02 2.7 0.1 2 21 194 214 189 219 0.59 Drought induced 19 protein (Di19), zinc-binding zf-H2C2_2 PF13465.6 26 ZEB2-205 - 220 3.2e-08 33.6 25.3 1 4 0.007 4.5 7.9 0.1 15 26 124 135 116 135 0.85 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZEB2-205 - 220 3.2e-08 33.6 25.3 2 4 1.4e-06 0.00092 19.5 1.6 1 25 138 164 138 165 0.77 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZEB2-205 - 220 3.2e-08 33.6 25.3 3 4 1.3e-05 0.0085 16.5 3.7 2 26 169 206 168 206 0.80 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZEB2-205 - 220 3.2e-08 33.6 25.3 4 4 0.23 1.4e+02 3.1 1.1 1 11 209 219 209 220 0.89 Zinc-finger double domain # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZEB2-205.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZEB2-205.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZEB2-205.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZEB2-205.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZEB2-205.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:58:18 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZEB2-206.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZEB2-206.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZEB2-206.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZEB2-206.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZEB2-206.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:58:18 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZEB2-207.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZEB2-207.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZEB2-207.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZEB2-207.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZEB2-207.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:58:19 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZEB2-208.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZEB2-208.Pfam32 --tblout 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------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZEB2-209.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZEB2-209.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZEB2-209.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZEB2-209.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm 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coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZEB2-211.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZEB2-211.Pfam32 --tblout 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------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZEB2-212.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZEB2-212.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZEB2-212.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZEB2-212.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm 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coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZEB2-214.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZEB2-214.Pfam32 --tblout 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------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZEB2-215.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZEB2-215.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZEB2-215.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZEB2-215.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm 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/oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZEB2-218.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:58:22 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZEB2-219.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZEB2-219.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZEB2-219.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZEB2-219.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZEB2-219.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:58:23 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZEB2-220.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZEB2-220.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZEB2-220.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZEB2-220.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZEB2-220.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:58:23 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZEB2-221.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZEB2-221.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZEB2-221.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZEB2-221.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZEB2-221.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:58:23 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZEB2-222.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZEB2-222.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZEB2-222.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZEB2-222.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZEB2-222.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:58:24 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZEB2-223.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZEB2-223.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZEB2-223.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZEB2-223.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZEB2-223.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:58:24 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZEB2-224 - 1190 1.5e-31 107.3 60.7 1 8 0.024 31 5.2 0.1 15 26 187 198 179 198 0.85 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZEB2-224 - 1190 1.5e-31 107.3 60.7 2 8 5.8e-06 0.0074 16.7 1.6 1 25 201 227 201 228 0.77 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZEB2-224 - 1190 1.5e-31 107.3 60.7 3 8 6e-06 0.0077 16.6 0.5 2 26 232 269 231 269 0.80 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZEB2-224 - 1190 1.5e-31 107.3 60.7 4 8 9.8e-11 1.2e-07 31.8 5.1 1 26 272 297 272 297 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZEB2-224 - 1190 1.5e-31 107.3 60.7 5 8 0.013 17 6.1 0.3 8 24 550 566 547 566 0.86 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZEB2-224 - 1190 1.5e-31 107.3 60.7 6 8 0.004 5.1 7.7 0.3 14 24 974 984 964 986 0.77 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZEB2-224 - 1190 1.5e-31 107.3 60.7 7 8 2.7e-09 3.5e-06 27.2 5.4 2 26 990 1014 989 1014 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZEB2-224 - 1190 1.5e-31 107.3 60.7 8 8 6.9e-10 8.8e-07 29.1 2.7 1 26 1017 1042 1017 1042 0.93 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZEB2-224 - 1190 6e-25 86.3 72.9 1 8 1.4e-06 0.0017 18.7 1.0 2 23 188 210 187 210 0.95 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZEB2-224 - 1190 6e-25 86.3 72.9 2 8 8e-07 0.001 19.4 1.2 1 23 217 239 217 239 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZEB2-224 - 1190 6e-25 86.3 72.9 3 8 9.1e-08 0.00012 22.4 5.0 1 23 258 280 258 280 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZEB2-224 - 1190 6e-25 86.3 72.9 4 8 1e-05 0.013 15.9 1.5 1 21 286 306 286 307 0.95 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZEB2-224 - 1190 6e-25 86.3 72.9 5 8 0.023 29 5.4 0.5 1 21 557 577 557 578 0.90 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZEB2-224 - 1190 6e-25 86.3 72.9 6 8 2.6e-05 0.034 14.6 1.3 1 23 975 997 975 997 0.94 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZEB2-224 - 1190 6e-25 86.3 72.9 7 8 0.0001 0.13 12.7 8.7 1 23 1003 1025 1003 1025 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZEB2-224 - 1190 6e-25 86.3 72.9 8 8 7.3e-06 0.0094 16.4 3.2 1 21 1031 1051 1031 1052 0.96 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZEB2-224 - 1190 8e-16 57.4 69.7 1 8 4.3e-05 0.055 14.3 0.6 2 24 188 210 187 210 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZEB2-224 - 1190 8e-16 57.4 69.7 2 8 4.9e-06 0.0063 17.3 1.2 1 23 217 239 217 240 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZEB2-224 - 1190 8e-16 57.4 69.7 3 8 2.5e-05 0.032 15.1 4.4 1 23 258 280 258 281 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZEB2-224 - 1190 8e-16 57.4 69.7 4 8 0.0011 1.4 9.9 1.6 1 22 286 307 286 309 0.90 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZEB2-224 - 1190 8e-16 57.4 69.7 5 8 0.0061 7.8 7.6 0.6 1 21 557 577 557 578 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZEB2-224 - 1190 8e-16 57.4 69.7 6 8 6.1e-05 0.078 13.9 1.0 1 23 975 997 975 998 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZEB2-224 - 1190 8e-16 57.4 69.7 7 8 0.04 51 5.1 7.7 1 23 1003 1025 1003 1026 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZEB2-224 - 1190 8e-16 57.4 69.7 8 8 0.00017 0.22 12.5 2.3 1 21 1031 1051 1031 1053 0.92 C2H2-type zinc finger zf-Di19 PF05605.12 54 ZEB2-224 - 1190 1.8e-08 34.5 1.9 1 4 1.4e-11 1.8e-08 34.5 1.9 3 51 187 238 185 246 0.79 Drought induced 19 protein (Di19), zinc-binding zf-Di19 PF05605.12 54 ZEB2-224 - 1190 1.8e-08 34.5 1.9 2 4 0.05 64 3.9 5.2 2 50 257 306 256 310 0.74 Drought induced 19 protein (Di19), zinc-binding zf-Di19 PF05605.12 54 ZEB2-224 - 1190 1.8e-08 34.5 1.9 3 4 6.7 8.5e+03 -2.8 1.2 3 12 557 566 555 568 0.85 Drought induced 19 protein (Di19), zinc-binding zf-Di19 PF05605.12 54 ZEB2-224 - 1190 1.8e-08 34.5 1.9 4 4 0.0063 8 6.8 5.0 3 51 975 1024 973 1027 0.74 Drought induced 19 protein (Di19), zinc-binding zf-C2H2_jaz PF12171.8 27 ZEB2-224 - 1190 6.1e-08 32.8 56.3 1 9 0.00015 0.19 12.1 0.0 3 22 188 207 187 207 0.95 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZEB2-224 - 1190 6.1e-08 32.8 56.3 2 9 0.0021 2.7 8.4 0.2 2 25 217 240 216 240 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZEB2-224 - 1190 6.1e-08 32.8 56.3 3 9 0.019 25 5.3 3.3 1 22 257 278 257 278 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZEB2-224 - 1190 6.1e-08 32.8 56.3 4 9 7.8e-06 0.01 16.1 1.9 2 25 286 309 285 309 0.96 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZEB2-224 - 1190 6.1e-08 32.8 56.3 5 9 0.35 4.4e+02 1.3 0.0 2 21 557 576 556 577 0.80 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZEB2-224 - 1190 6.1e-08 32.8 56.3 6 9 1.2 1.5e+03 -0.4 0.4 9 19 843 853 842 853 0.91 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZEB2-224 - 1190 6.1e-08 32.8 56.3 7 9 2e-05 0.025 14.9 1.0 2 21 975 994 974 997 0.91 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZEB2-224 - 1190 6.1e-08 32.8 56.3 8 9 0.15 2e+02 2.5 4.7 4 20 1005 1021 1002 1021 0.89 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZEB2-224 - 1190 6.1e-08 32.8 56.3 9 9 0.1 1.3e+02 3.0 0.3 4 22 1033 1051 1030 1051 0.90 Zinc-finger double-stranded RNA-binding zf-met PF12874.7 25 ZEB2-224 - 1190 5.6e-07 29.7 54.5 1 8 0.45 5.7e+02 1.1 0.0 2 20 188 206 187 207 0.90 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZEB2-224 - 1190 5.6e-07 29.7 54.5 2 8 0.0001 0.13 12.7 0.4 1 24 217 240 217 240 0.91 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZEB2-224 - 1190 5.6e-07 29.7 54.5 3 8 0.05 64 4.1 1.8 1 21 258 278 258 280 0.93 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZEB2-224 - 1190 5.6e-07 29.7 54.5 4 8 3.2e-05 0.041 14.3 3.1 1 24 286 309 286 309 0.95 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZEB2-224 - 1190 5.6e-07 29.7 54.5 5 8 0.23 2.9e+02 2.0 0.0 1 20 557 576 557 577 0.90 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZEB2-224 - 1190 5.6e-07 29.7 54.5 6 8 0.00016 0.2 12.1 0.4 1 19 975 993 975 995 0.92 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZEB2-224 - 1190 5.6e-07 29.7 54.5 7 8 0.19 2.5e+02 2.3 6.9 2 22 1004 1022 1003 1025 0.88 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZEB2-224 - 1190 5.6e-07 29.7 54.5 8 8 0.0021 2.6 8.5 2.4 1 21 1031 1051 1031 1053 0.91 Zinc-finger of C2H2 type # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZEB2-224.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZEB2-224.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZEB2-224.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZEB2-224.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZEB2-224.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:58:25 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZEB2-225 - 1214 1.9e-31 107.1 60.7 1 8 0.023 32 5.2 0.1 15 26 211 222 203 222 0.85 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZEB2-225 - 1214 1.9e-31 107.1 60.7 2 8 5.5e-06 0.0076 16.6 1.6 1 25 225 251 225 252 0.77 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZEB2-225 - 1214 1.9e-31 107.1 60.7 3 8 5.7e-06 0.0079 16.6 0.5 2 26 256 293 255 293 0.80 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZEB2-225 - 1214 1.9e-31 107.1 60.7 4 8 9.3e-11 1.3e-07 31.7 5.1 1 26 296 321 296 321 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZEB2-225 - 1214 1.9e-31 107.1 60.7 5 8 0.012 17 6.0 0.3 8 24 574 590 571 590 0.86 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZEB2-225 - 1214 1.9e-31 107.1 60.7 6 8 0.0038 5.2 7.7 0.3 14 24 998 1008 988 1010 0.77 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZEB2-225 - 1214 1.9e-31 107.1 60.7 7 8 2.6e-09 3.5e-06 27.2 5.4 2 26 1014 1038 1013 1038 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZEB2-225 - 1214 1.9e-31 107.1 60.7 8 8 6.5e-10 9e-07 29.1 2.7 1 26 1041 1066 1041 1066 0.93 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZEB2-225 - 1214 7.2e-25 86.0 72.9 1 8 1.3e-06 0.0018 18.6 1.0 2 23 212 234 211 234 0.95 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZEB2-225 - 1214 7.2e-25 86.0 72.9 2 8 7.6e-07 0.001 19.4 1.2 1 23 241 263 241 263 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZEB2-225 - 1214 7.2e-25 86.0 72.9 3 8 8.6e-08 0.00012 22.3 5.0 1 23 282 304 282 304 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZEB2-225 - 1214 7.2e-25 86.0 72.9 4 8 9.5e-06 0.013 15.9 1.5 1 21 310 330 310 331 0.95 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZEB2-225 - 1214 7.2e-25 86.0 72.9 5 8 0.022 30 5.3 0.5 1 21 581 601 581 602 0.90 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZEB2-225 - 1214 7.2e-25 86.0 72.9 6 8 2.5e-05 0.034 14.6 1.3 1 23 999 1021 999 1021 0.94 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZEB2-225 - 1214 7.2e-25 86.0 72.9 7 8 9.9e-05 0.14 12.7 8.7 1 23 1027 1049 1027 1049 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZEB2-225 - 1214 7.2e-25 86.0 72.9 8 8 7e-06 0.0096 16.3 3.2 1 21 1055 1075 1055 1076 0.96 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZEB2-225 - 1214 9.7e-16 57.1 69.7 1 8 4.1e-05 0.056 14.3 0.6 2 24 212 234 211 234 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZEB2-225 - 1214 9.7e-16 57.1 69.7 2 8 4.6e-06 0.0064 17.2 1.2 1 23 241 263 241 264 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZEB2-225 - 1214 9.7e-16 57.1 69.7 3 8 2.4e-05 0.032 15.0 4.4 1 23 282 304 282 305 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZEB2-225 - 1214 9.7e-16 57.1 69.7 4 8 0.0011 1.5 9.9 1.6 1 22 310 331 310 333 0.90 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZEB2-225 - 1214 9.7e-16 57.1 69.7 5 8 0.0058 7.9 7.6 0.6 1 21 581 601 581 602 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZEB2-225 - 1214 9.7e-16 57.1 69.7 6 8 5.8e-05 0.08 13.8 1.0 1 23 999 1021 999 1022 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZEB2-225 - 1214 9.7e-16 57.1 69.7 7 8 0.038 52 5.1 7.7 1 23 1027 1049 1027 1050 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZEB2-225 - 1214 9.7e-16 57.1 69.7 8 8 0.00016 0.22 12.4 2.3 1 21 1055 1075 1055 1077 0.92 C2H2-type zinc finger zf-Di19 PF05605.12 54 ZEB2-225 - 1214 1.8e-08 34.5 1.9 1 4 1.3e-11 1.8e-08 34.5 1.9 3 51 211 262 209 270 0.79 Drought induced 19 protein (Di19), zinc-binding zf-Di19 PF05605.12 54 ZEB2-225 - 1214 1.8e-08 34.5 1.9 2 4 0.048 66 3.9 5.2 2 50 281 330 280 334 0.74 Drought induced 19 protein (Di19), zinc-binding zf-Di19 PF05605.12 54 ZEB2-225 - 1214 1.8e-08 34.5 1.9 3 4 6.3 8.7e+03 -2.9 1.2 3 12 581 590 579 592 0.85 Drought induced 19 protein (Di19), zinc-binding zf-Di19 PF05605.12 54 ZEB2-225 - 1214 1.8e-08 34.5 1.9 4 4 0.006 8.2 6.8 5.0 3 51 999 1048 997 1051 0.74 Drought induced 19 protein (Di19), zinc-binding zf-C2H2_jaz PF12171.8 27 ZEB2-225 - 1214 7.4e-08 32.5 56.3 1 9 0.00014 0.19 12.0 0.0 3 22 212 231 211 231 0.95 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZEB2-225 - 1214 7.4e-08 32.5 56.3 2 9 0.002 2.8 8.3 0.2 2 25 241 264 240 264 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZEB2-225 - 1214 7.4e-08 32.5 56.3 3 9 0.018 25 5.3 3.3 1 22 281 302 281 302 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZEB2-225 - 1214 7.4e-08 32.5 56.3 4 9 7.4e-06 0.01 16.1 1.9 2 25 310 333 309 333 0.96 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZEB2-225 - 1214 7.4e-08 32.5 56.3 5 9 0.33 4.5e+02 1.3 0.0 2 21 581 600 580 601 0.80 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZEB2-225 - 1214 7.4e-08 32.5 56.3 6 9 1.1 1.5e+03 -0.4 0.4 9 19 867 877 866 877 0.91 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZEB2-225 - 1214 7.4e-08 32.5 56.3 7 9 1.9e-05 0.026 14.8 1.0 2 21 999 1018 998 1021 0.91 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZEB2-225 - 1214 7.4e-08 32.5 56.3 8 9 0.15 2e+02 2.4 4.7 4 20 1029 1045 1026 1045 0.89 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZEB2-225 - 1214 7.4e-08 32.5 56.3 9 9 0.098 1.3e+02 3.0 0.3 4 22 1057 1075 1054 1075 0.90 Zinc-finger double-stranded RNA-binding zf-met PF12874.7 25 ZEB2-225 - 1214 6.7e-07 29.5 54.5 1 8 0.43 5.9e+02 1.1 0.0 2 20 212 230 211 231 0.90 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZEB2-225 - 1214 6.7e-07 29.5 54.5 2 8 9.7e-05 0.13 12.7 0.4 1 24 241 264 241 264 0.91 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZEB2-225 - 1214 6.7e-07 29.5 54.5 3 8 0.047 65 4.1 1.8 1 21 282 302 282 304 0.93 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZEB2-225 - 1214 6.7e-07 29.5 54.5 4 8 3.1e-05 0.042 14.2 3.1 1 24 310 333 310 333 0.95 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZEB2-225 - 1214 6.7e-07 29.5 54.5 5 8 0.22 3e+02 2.0 0.0 1 20 581 600 581 601 0.90 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZEB2-225 - 1214 6.7e-07 29.5 54.5 6 8 0.00015 0.21 12.0 0.4 1 19 999 1017 999 1019 0.92 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZEB2-225 - 1214 6.7e-07 29.5 54.5 7 8 0.18 2.6e+02 2.2 6.9 2 22 1028 1046 1027 1049 0.88 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZEB2-225 - 1214 6.7e-07 29.5 54.5 8 8 0.002 2.7 8.5 2.4 1 21 1055 1075 1055 1077 0.91 Zinc-finger of C2H2 type # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZEB2-225.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZEB2-225.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZEB2-225.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZEB2-225.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZEB2-225.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:58:25 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZEB2-226.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZEB2-226.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZEB2-226.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZEB2-226.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZEB2-226.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:58:25 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZEB2-227 - 1214 1.9e-31 107.1 60.7 1 8 0.023 32 5.2 0.1 15 26 211 222 203 222 0.85 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZEB2-227 - 1214 1.9e-31 107.1 60.7 2 8 5.5e-06 0.0076 16.6 1.6 1 25 225 251 225 252 0.77 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZEB2-227 - 1214 1.9e-31 107.1 60.7 3 8 5.7e-06 0.0079 16.6 0.5 2 26 256 293 255 293 0.80 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZEB2-227 - 1214 1.9e-31 107.1 60.7 4 8 9.3e-11 1.3e-07 31.7 5.1 1 26 296 321 296 321 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZEB2-227 - 1214 1.9e-31 107.1 60.7 5 8 0.012 17 6.0 0.3 8 24 574 590 571 590 0.86 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZEB2-227 - 1214 1.9e-31 107.1 60.7 6 8 0.0038 5.2 7.7 0.3 14 24 998 1008 988 1010 0.77 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZEB2-227 - 1214 1.9e-31 107.1 60.7 7 8 2.6e-09 3.5e-06 27.2 5.4 2 26 1014 1038 1013 1038 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZEB2-227 - 1214 1.9e-31 107.1 60.7 8 8 6.5e-10 9e-07 29.1 2.7 1 26 1041 1066 1041 1066 0.93 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZEB2-227 - 1214 7.2e-25 86.0 72.9 1 8 1.3e-06 0.0018 18.6 1.0 2 23 212 234 211 234 0.95 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZEB2-227 - 1214 7.2e-25 86.0 72.9 2 8 7.6e-07 0.001 19.4 1.2 1 23 241 263 241 263 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZEB2-227 - 1214 7.2e-25 86.0 72.9 3 8 8.6e-08 0.00012 22.3 5.0 1 23 282 304 282 304 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZEB2-227 - 1214 7.2e-25 86.0 72.9 4 8 9.5e-06 0.013 15.9 1.5 1 21 310 330 310 331 0.95 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZEB2-227 - 1214 7.2e-25 86.0 72.9 5 8 0.022 30 5.3 0.5 1 21 581 601 581 602 0.90 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZEB2-227 - 1214 7.2e-25 86.0 72.9 6 8 2.5e-05 0.034 14.6 1.3 1 23 999 1021 999 1021 0.94 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZEB2-227 - 1214 7.2e-25 86.0 72.9 7 8 9.9e-05 0.14 12.7 8.7 1 23 1027 1049 1027 1049 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZEB2-227 - 1214 7.2e-25 86.0 72.9 8 8 7e-06 0.0096 16.3 3.2 1 21 1055 1075 1055 1076 0.96 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZEB2-227 - 1214 9.7e-16 57.1 69.7 1 8 4.1e-05 0.056 14.3 0.6 2 24 212 234 211 234 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZEB2-227 - 1214 9.7e-16 57.1 69.7 2 8 4.6e-06 0.0064 17.2 1.2 1 23 241 263 241 264 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZEB2-227 - 1214 9.7e-16 57.1 69.7 3 8 2.4e-05 0.032 15.0 4.4 1 23 282 304 282 305 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZEB2-227 - 1214 9.7e-16 57.1 69.7 4 8 0.0011 1.5 9.9 1.6 1 22 310 331 310 333 0.90 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZEB2-227 - 1214 9.7e-16 57.1 69.7 5 8 0.0058 7.9 7.6 0.6 1 21 581 601 581 602 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZEB2-227 - 1214 9.7e-16 57.1 69.7 6 8 5.8e-05 0.08 13.8 1.0 1 23 999 1021 999 1022 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZEB2-227 - 1214 9.7e-16 57.1 69.7 7 8 0.038 52 5.1 7.7 1 23 1027 1049 1027 1050 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZEB2-227 - 1214 9.7e-16 57.1 69.7 8 8 0.00016 0.22 12.4 2.3 1 21 1055 1075 1055 1077 0.92 C2H2-type zinc finger zf-Di19 PF05605.12 54 ZEB2-227 - 1214 1.8e-08 34.5 1.9 1 4 1.3e-11 1.8e-08 34.5 1.9 3 51 211 262 209 270 0.79 Drought induced 19 protein (Di19), zinc-binding zf-Di19 PF05605.12 54 ZEB2-227 - 1214 1.8e-08 34.5 1.9 2 4 0.048 66 3.9 5.2 2 50 281 330 280 334 0.74 Drought induced 19 protein (Di19), zinc-binding zf-Di19 PF05605.12 54 ZEB2-227 - 1214 1.8e-08 34.5 1.9 3 4 6.3 8.7e+03 -2.9 1.2 3 12 581 590 579 592 0.85 Drought induced 19 protein (Di19), zinc-binding zf-Di19 PF05605.12 54 ZEB2-227 - 1214 1.8e-08 34.5 1.9 4 4 0.006 8.2 6.8 5.0 3 51 999 1048 997 1051 0.74 Drought induced 19 protein (Di19), zinc-binding zf-C2H2_jaz PF12171.8 27 ZEB2-227 - 1214 7.4e-08 32.5 56.3 1 9 0.00014 0.19 12.0 0.0 3 22 212 231 211 231 0.95 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZEB2-227 - 1214 7.4e-08 32.5 56.3 2 9 0.002 2.8 8.3 0.2 2 25 241 264 240 264 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZEB2-227 - 1214 7.4e-08 32.5 56.3 3 9 0.018 25 5.3 3.3 1 22 281 302 281 302 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZEB2-227 - 1214 7.4e-08 32.5 56.3 4 9 7.4e-06 0.01 16.1 1.9 2 25 310 333 309 333 0.96 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZEB2-227 - 1214 7.4e-08 32.5 56.3 5 9 0.33 4.5e+02 1.3 0.0 2 21 581 600 580 601 0.80 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZEB2-227 - 1214 7.4e-08 32.5 56.3 6 9 1.1 1.5e+03 -0.4 0.4 9 19 867 877 866 877 0.91 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZEB2-227 - 1214 7.4e-08 32.5 56.3 7 9 1.9e-05 0.026 14.8 1.0 2 21 999 1018 998 1021 0.91 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZEB2-227 - 1214 7.4e-08 32.5 56.3 8 9 0.15 2e+02 2.4 4.7 4 20 1029 1045 1026 1045 0.89 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZEB2-227 - 1214 7.4e-08 32.5 56.3 9 9 0.098 1.3e+02 3.0 0.3 4 22 1057 1075 1054 1075 0.90 Zinc-finger double-stranded RNA-binding zf-met PF12874.7 25 ZEB2-227 - 1214 6.7e-07 29.5 54.5 1 8 0.43 5.9e+02 1.1 0.0 2 20 212 230 211 231 0.90 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZEB2-227 - 1214 6.7e-07 29.5 54.5 2 8 9.7e-05 0.13 12.7 0.4 1 24 241 264 241 264 0.91 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZEB2-227 - 1214 6.7e-07 29.5 54.5 3 8 0.047 65 4.1 1.8 1 21 282 302 282 304 0.93 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZEB2-227 - 1214 6.7e-07 29.5 54.5 4 8 3.1e-05 0.042 14.2 3.1 1 24 310 333 310 333 0.95 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZEB2-227 - 1214 6.7e-07 29.5 54.5 5 8 0.22 3e+02 2.0 0.0 1 20 581 600 581 601 0.90 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZEB2-227 - 1214 6.7e-07 29.5 54.5 6 8 0.00015 0.21 12.0 0.4 1 19 999 1017 999 1019 0.92 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZEB2-227 - 1214 6.7e-07 29.5 54.5 7 8 0.18 2.6e+02 2.2 6.9 2 22 1028 1046 1027 1049 0.88 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZEB2-227 - 1214 6.7e-07 29.5 54.5 8 8 0.002 2.7 8.5 2.4 1 21 1055 1075 1055 1077 0.91 Zinc-finger of C2H2 type # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZEB2-227.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZEB2-227.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZEB2-227.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZEB2-227.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZEB2-227.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:58:26 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZEB2-228.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZEB2-228.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZEB2-228.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZEB2-228.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZEB2-228.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:58:26 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZEB2-229.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZEB2-229.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZEB2-229.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZEB2-229.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZEB2-229.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:58:27 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZEB2-230.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZEB2-230.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZEB2-230.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZEB2-230.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZEB2-230.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:58:27 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZEB2-231.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZEB2-231.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZEB2-231.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZEB2-231.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZEB2-231.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:58:27 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZEB2-232 - 1202 1.7e-31 107.2 60.7 1 8 0.023 32 5.2 0.1 15 26 211 222 203 222 0.85 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZEB2-232 - 1202 1.7e-31 107.2 60.7 2 8 5.4e-06 0.0075 16.7 1.6 1 25 225 251 225 252 0.77 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZEB2-232 - 1202 1.7e-31 107.2 60.7 3 8 5.6e-06 0.0078 16.6 0.5 2 26 256 293 255 293 0.80 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZEB2-232 - 1202 1.7e-31 107.2 60.7 4 8 9.2e-11 1.3e-07 31.7 5.1 1 26 296 321 296 321 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZEB2-232 - 1202 1.7e-31 107.2 60.7 5 8 0.012 17 6.1 0.3 8 24 574 590 571 590 0.86 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZEB2-232 - 1202 1.7e-31 107.2 60.7 6 8 0.0038 5.2 7.7 0.3 14 24 998 1008 988 1010 0.77 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZEB2-232 - 1202 1.7e-31 107.2 60.7 7 8 2.5e-09 3.5e-06 27.2 5.4 2 26 1014 1038 1013 1038 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZEB2-232 - 1202 1.7e-31 107.2 60.7 8 8 6.5e-10 8.9e-07 29.1 2.7 1 26 1041 1066 1041 1066 0.93 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZEB2-232 - 1202 6.5e-25 86.2 72.9 1 8 1.3e-06 0.0018 18.7 1.0 2 23 212 234 211 234 0.95 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZEB2-232 - 1202 6.5e-25 86.2 72.9 2 8 7.5e-07 0.001 19.4 1.2 1 23 241 263 241 263 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZEB2-232 - 1202 6.5e-25 86.2 72.9 3 8 8.5e-08 0.00012 22.4 5.0 1 23 282 304 282 304 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZEB2-232 - 1202 6.5e-25 86.2 72.9 4 8 9.4e-06 0.013 15.9 1.5 1 21 310 330 310 331 0.95 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZEB2-232 - 1202 6.5e-25 86.2 72.9 5 8 0.021 30 5.3 0.5 1 21 581 601 581 602 0.90 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZEB2-232 - 1202 6.5e-25 86.2 72.9 6 8 2.5e-05 0.034 14.6 1.3 1 23 999 1021 999 1021 0.94 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZEB2-232 - 1202 6.5e-25 86.2 72.9 7 8 9.8e-05 0.13 12.7 8.7 1 23 1027 1049 1027 1049 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZEB2-232 - 1202 6.5e-25 86.2 72.9 8 8 6.9e-06 0.0095 16.3 3.2 1 21 1055 1075 1055 1076 0.96 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZEB2-232 - 1202 8.8e-16 57.3 69.7 1 8 4e-05 0.056 14.3 0.6 2 24 212 234 211 234 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZEB2-232 - 1202 8.8e-16 57.3 69.7 2 8 4.6e-06 0.0063 17.3 1.2 1 23 241 263 241 264 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZEB2-232 - 1202 8.8e-16 57.3 69.7 3 8 2.3e-05 0.032 15.1 4.4 1 23 282 304 282 305 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZEB2-232 - 1202 8.8e-16 57.3 69.7 4 8 0.001 1.4 9.9 1.6 1 22 310 331 310 333 0.90 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZEB2-232 - 1202 8.8e-16 57.3 69.7 5 8 0.0057 7.9 7.6 0.6 1 21 581 601 581 602 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZEB2-232 - 1202 8.8e-16 57.3 69.7 6 8 5.7e-05 0.079 13.8 1.0 1 23 999 1021 999 1022 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZEB2-232 - 1202 8.8e-16 57.3 69.7 7 8 0.037 51 5.1 7.7 1 23 1027 1049 1027 1050 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZEB2-232 - 1202 8.8e-16 57.3 69.7 8 8 0.00016 0.22 12.5 2.3 1 21 1055 1075 1055 1077 0.92 C2H2-type zinc finger zf-Di19 PF05605.12 54 ZEB2-232 - 1202 1.8e-08 34.5 1.9 1 4 1.3e-11 1.8e-08 34.5 1.9 3 51 211 262 209 270 0.79 Drought induced 19 protein (Di19), zinc-binding zf-Di19 PF05605.12 54 ZEB2-232 - 1202 1.8e-08 34.5 1.9 2 4 0.047 65 3.9 5.2 2 50 281 330 280 334 0.74 Drought induced 19 protein (Di19), zinc-binding zf-Di19 PF05605.12 54 ZEB2-232 - 1202 1.8e-08 34.5 1.9 3 4 6.2 8.6e+03 -2.9 1.2 3 12 581 590 579 592 0.85 Drought induced 19 protein (Di19), zinc-binding zf-Di19 PF05605.12 54 ZEB2-232 - 1202 1.8e-08 34.5 1.9 4 4 0.0059 8.1 6.8 5.0 3 51 999 1048 997 1051 0.74 Drought induced 19 protein (Di19), zinc-binding zf-C2H2_jaz PF12171.8 27 ZEB2-232 - 1202 6.8e-08 32.6 56.3 1 9 0.00014 0.19 12.1 0.0 3 22 212 231 211 231 0.95 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZEB2-232 - 1202 6.8e-08 32.6 56.3 2 9 0.002 2.8 8.3 0.2 2 25 241 264 240 264 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZEB2-232 - 1202 6.8e-08 32.6 56.3 3 9 0.018 25 5.3 3.3 1 22 281 302 281 302 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZEB2-232 - 1202 6.8e-08 32.6 56.3 4 9 7.3e-06 0.01 16.1 1.9 2 25 310 333 309 333 0.96 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZEB2-232 - 1202 6.8e-08 32.6 56.3 5 9 0.33 4.5e+02 1.3 0.0 2 21 581 600 580 601 0.80 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZEB2-232 - 1202 6.8e-08 32.6 56.3 6 9 1.1 1.5e+03 -0.4 0.4 9 19 867 877 866 877 0.91 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZEB2-232 - 1202 6.8e-08 32.6 56.3 7 9 1.9e-05 0.026 14.8 1.0 2 21 999 1018 998 1021 0.91 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZEB2-232 - 1202 6.8e-08 32.6 56.3 8 9 0.14 2e+02 2.4 4.7 4 20 1029 1045 1026 1045 0.89 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZEB2-232 - 1202 6.8e-08 32.6 56.3 9 9 0.097 1.3e+02 3.0 0.3 4 22 1057 1075 1054 1075 0.90 Zinc-finger double-stranded RNA-binding zf-met PF12874.7 25 ZEB2-232 - 1202 4.1e-07 30.2 54.2 1 8 0.42 5.8e+02 1.1 0.0 2 20 212 230 211 231 0.90 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZEB2-232 - 1202 4.1e-07 30.2 54.2 2 8 9.6e-05 0.13 12.7 0.4 1 24 241 264 241 264 0.91 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZEB2-232 - 1202 4.1e-07 30.2 54.2 3 8 0.047 64 4.1 1.8 1 21 282 302 282 304 0.93 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZEB2-232 - 1202 4.1e-07 30.2 54.2 4 8 3e-05 0.042 14.3 3.1 1 24 310 333 310 333 0.95 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZEB2-232 - 1202 4.1e-07 30.2 54.2 5 8 0.21 2.9e+02 2.0 0.0 1 20 581 600 581 601 0.90 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZEB2-232 - 1202 4.1e-07 30.2 54.2 6 8 0.00015 0.21 12.1 0.4 1 19 999 1017 999 1019 0.92 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZEB2-232 - 1202 4.1e-07 30.2 54.2 7 8 0.18 2.5e+02 2.2 6.9 2 22 1028 1046 1027 1049 0.88 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZEB2-232 - 1202 4.1e-07 30.2 54.2 8 8 0.0013 1.9 9.0 2.2 1 22 1055 1076 1055 1078 0.91 Zinc-finger of C2H2 type # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZEB2-232.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZEB2-232.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZEB2-232.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZEB2-232.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZEB2-232.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:58:28 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZEB2-233 - 1102 7.7e-32 108.3 60.7 1 8 0.022 29 5.3 0.1 15 26 99 110 91 110 0.85 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZEB2-233 - 1102 7.7e-32 108.3 60.7 2 8 5.3e-06 0.0068 16.8 1.6 1 25 113 139 113 140 0.77 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZEB2-233 - 1102 7.7e-32 108.3 60.7 3 8 5.5e-06 0.007 16.7 0.5 2 26 144 181 143 181 0.80 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZEB2-233 - 1102 7.7e-32 108.3 60.7 4 8 9e-11 1.1e-07 31.9 5.1 1 26 184 209 184 209 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZEB2-233 - 1102 7.7e-32 108.3 60.7 5 8 0.012 15 6.2 0.3 8 24 462 478 459 478 0.86 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZEB2-233 - 1102 7.7e-32 108.3 60.7 6 8 0.0037 4.7 7.8 0.3 14 24 886 896 876 898 0.77 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZEB2-233 - 1102 7.7e-32 108.3 60.7 7 8 2.5e-09 3.2e-06 27.3 5.4 2 26 902 926 901 926 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZEB2-233 - 1102 7.7e-32 108.3 60.7 8 8 6.3e-10 8.1e-07 29.2 2.7 1 26 929 954 929 954 0.93 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZEB2-233 - 1102 3e-25 87.2 72.9 1 8 1.2e-06 0.0016 18.8 1.0 2 23 100 122 99 122 0.95 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZEB2-233 - 1102 3e-25 87.2 72.9 2 8 7.3e-07 0.00094 19.5 1.2 1 23 129 151 129 151 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZEB2-233 - 1102 3e-25 87.2 72.9 3 8 8.3e-08 0.00011 22.5 5.0 1 23 170 192 170 192 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZEB2-233 - 1102 3e-25 87.2 72.9 4 8 9.2e-06 0.012 16.1 1.5 1 21 198 218 198 219 0.95 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZEB2-233 - 1102 3e-25 87.2 72.9 5 8 0.021 27 5.5 0.5 1 21 469 489 469 490 0.90 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZEB2-233 - 1102 3e-25 87.2 72.9 6 8 2.4e-05 0.031 14.7 1.3 1 23 887 909 887 909 0.94 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZEB2-233 - 1102 3e-25 87.2 72.9 7 8 9.6e-05 0.12 12.9 8.7 1 23 915 937 915 937 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZEB2-233 - 1102 3e-25 87.2 72.9 8 8 6.7e-06 0.0086 16.5 3.2 1 21 943 963 943 964 0.96 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZEB2-233 - 1102 4e-16 58.3 69.7 1 8 3.9e-05 0.05 14.4 0.6 2 24 100 122 99 122 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZEB2-233 - 1102 4e-16 58.3 69.7 2 8 4.5e-06 0.0057 17.4 1.2 1 23 129 151 129 152 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZEB2-233 - 1102 4e-16 58.3 69.7 3 8 2.3e-05 0.029 15.2 4.4 1 23 170 192 170 193 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZEB2-233 - 1102 4e-16 58.3 69.7 4 8 0.001 1.3 10.0 1.6 1 22 198 219 198 221 0.90 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZEB2-233 - 1102 4e-16 58.3 69.7 5 8 0.0056 7.1 7.8 0.6 1 21 469 489 469 490 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZEB2-233 - 1102 4e-16 58.3 69.7 6 8 5.6e-05 0.072 14.0 1.0 1 23 887 909 887 910 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZEB2-233 - 1102 4e-16 58.3 69.7 7 8 0.036 47 5.2 7.7 1 23 915 937 915 938 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZEB2-233 - 1102 4e-16 58.3 69.7 8 8 0.00016 0.2 12.6 2.3 1 21 943 963 943 965 0.92 C2H2-type zinc finger zf-Di19 PF05605.12 54 ZEB2-233 - 1102 1.6e-08 34.7 1.9 1 4 1.3e-11 1.6e-08 34.7 1.9 3 51 99 150 97 158 0.79 Drought induced 19 protein (Di19), zinc-binding zf-Di19 PF05605.12 54 ZEB2-233 - 1102 1.6e-08 34.7 1.9 2 4 0.046 59 4.1 5.2 2 50 169 218 168 222 0.74 Drought induced 19 protein (Di19), zinc-binding zf-Di19 PF05605.12 54 ZEB2-233 - 1102 1.6e-08 34.7 1.9 3 4 6.1 7.9e+03 -2.7 1.2 3 12 469 478 467 480 0.85 Drought induced 19 protein (Di19), zinc-binding zf-Di19 PF05605.12 54 ZEB2-233 - 1102 1.6e-08 34.7 1.9 4 4 0.0057 7.3 7.0 5.0 3 51 887 936 885 939 0.74 Drought induced 19 protein (Di19), zinc-binding zf-C2H2_jaz PF12171.8 27 ZEB2-233 - 1102 3.2e-08 33.7 56.3 1 9 0.00014 0.17 12.2 0.0 3 22 100 119 99 119 0.95 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZEB2-233 - 1102 3.2e-08 33.7 56.3 2 9 0.002 2.5 8.5 0.2 2 25 129 152 128 152 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZEB2-233 - 1102 3.2e-08 33.7 56.3 3 9 0.018 23 5.4 3.3 1 22 169 190 169 190 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZEB2-233 - 1102 3.2e-08 33.7 56.3 4 9 7.2e-06 0.0092 16.3 1.9 2 25 198 221 197 221 0.96 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZEB2-233 - 1102 3.2e-08 33.7 56.3 5 9 0.32 4.1e+02 1.4 0.0 2 21 469 488 468 489 0.80 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZEB2-233 - 1102 3.2e-08 33.7 56.3 6 9 1.1 1.4e+03 -0.3 0.4 9 19 755 765 754 765 0.91 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZEB2-233 - 1102 3.2e-08 33.7 56.3 7 9 1.8e-05 0.023 15.0 1.0 2 21 887 906 886 909 0.91 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZEB2-233 - 1102 3.2e-08 33.7 56.3 8 9 0.14 1.8e+02 2.6 4.7 4 20 917 933 914 933 0.89 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZEB2-233 - 1102 3.2e-08 33.7 56.3 9 9 0.095 1.2e+02 3.1 0.3 4 22 945 963 942 963 0.90 Zinc-finger double-stranded RNA-binding zf-met PF12874.7 25 ZEB2-233 - 1102 3.1e-07 30.6 54.5 1 8 0.41 5.3e+02 1.2 0.0 2 20 100 118 99 119 0.90 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZEB2-233 - 1102 3.1e-07 30.6 54.5 2 8 9.4e-05 0.12 12.8 0.4 1 24 129 152 129 152 0.91 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZEB2-233 - 1102 3.1e-07 30.6 54.5 3 8 0.046 58 4.3 1.8 1 21 170 190 170 192 0.93 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZEB2-233 - 1102 3.1e-07 30.6 54.5 4 8 3e-05 0.038 14.4 3.1 1 24 198 221 198 221 0.95 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZEB2-233 - 1102 3.1e-07 30.6 54.5 5 8 0.21 2.7e+02 2.2 0.0 1 20 469 488 469 489 0.90 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZEB2-233 - 1102 3.1e-07 30.6 54.5 6 8 0.00015 0.19 12.2 0.4 1 19 887 905 887 907 0.92 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZEB2-233 - 1102 3.1e-07 30.6 54.5 7 8 0.18 2.3e+02 2.4 6.9 2 22 916 934 915 937 0.88 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZEB2-233 - 1102 3.1e-07 30.6 54.5 8 8 0.0019 2.4 8.7 2.4 1 21 943 963 943 965 0.91 Zinc-finger of C2H2 type # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZEB2-233.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZEB2-233.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZEB2-233.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZEB2-233.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZEB2-233.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:58:28 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZEB2-234 - 1102 7.7e-32 108.3 60.7 1 8 0.022 29 5.3 0.1 15 26 99 110 91 110 0.85 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZEB2-234 - 1102 7.7e-32 108.3 60.7 2 8 5.3e-06 0.0068 16.8 1.6 1 25 113 139 113 140 0.77 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZEB2-234 - 1102 7.7e-32 108.3 60.7 3 8 5.5e-06 0.007 16.7 0.5 2 26 144 181 143 181 0.80 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZEB2-234 - 1102 7.7e-32 108.3 60.7 4 8 9e-11 1.1e-07 31.9 5.1 1 26 184 209 184 209 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZEB2-234 - 1102 7.7e-32 108.3 60.7 5 8 0.012 15 6.2 0.3 8 24 462 478 459 478 0.86 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZEB2-234 - 1102 7.7e-32 108.3 60.7 6 8 0.0037 4.7 7.8 0.3 14 24 886 896 876 898 0.77 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZEB2-234 - 1102 7.7e-32 108.3 60.7 7 8 2.5e-09 3.2e-06 27.3 5.4 2 26 902 926 901 926 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZEB2-234 - 1102 7.7e-32 108.3 60.7 8 8 6.3e-10 8.1e-07 29.2 2.7 1 26 929 954 929 954 0.93 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZEB2-234 - 1102 3e-25 87.2 72.9 1 8 1.2e-06 0.0016 18.8 1.0 2 23 100 122 99 122 0.95 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZEB2-234 - 1102 3e-25 87.2 72.9 2 8 7.3e-07 0.00094 19.5 1.2 1 23 129 151 129 151 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZEB2-234 - 1102 3e-25 87.2 72.9 3 8 8.3e-08 0.00011 22.5 5.0 1 23 170 192 170 192 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZEB2-234 - 1102 3e-25 87.2 72.9 4 8 9.2e-06 0.012 16.1 1.5 1 21 198 218 198 219 0.95 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZEB2-234 - 1102 3e-25 87.2 72.9 5 8 0.021 27 5.5 0.5 1 21 469 489 469 490 0.90 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZEB2-234 - 1102 3e-25 87.2 72.9 6 8 2.4e-05 0.031 14.7 1.3 1 23 887 909 887 909 0.94 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZEB2-234 - 1102 3e-25 87.2 72.9 7 8 9.6e-05 0.12 12.9 8.7 1 23 915 937 915 937 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZEB2-234 - 1102 3e-25 87.2 72.9 8 8 6.7e-06 0.0086 16.5 3.2 1 21 943 963 943 964 0.96 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZEB2-234 - 1102 4e-16 58.3 69.7 1 8 3.9e-05 0.05 14.4 0.6 2 24 100 122 99 122 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZEB2-234 - 1102 4e-16 58.3 69.7 2 8 4.5e-06 0.0057 17.4 1.2 1 23 129 151 129 152 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZEB2-234 - 1102 4e-16 58.3 69.7 3 8 2.3e-05 0.029 15.2 4.4 1 23 170 192 170 193 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZEB2-234 - 1102 4e-16 58.3 69.7 4 8 0.001 1.3 10.0 1.6 1 22 198 219 198 221 0.90 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZEB2-234 - 1102 4e-16 58.3 69.7 5 8 0.0056 7.1 7.8 0.6 1 21 469 489 469 490 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZEB2-234 - 1102 4e-16 58.3 69.7 6 8 5.6e-05 0.072 14.0 1.0 1 23 887 909 887 910 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZEB2-234 - 1102 4e-16 58.3 69.7 7 8 0.036 47 5.2 7.7 1 23 915 937 915 938 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZEB2-234 - 1102 4e-16 58.3 69.7 8 8 0.00016 0.2 12.6 2.3 1 21 943 963 943 965 0.92 C2H2-type zinc finger zf-Di19 PF05605.12 54 ZEB2-234 - 1102 1.6e-08 34.7 1.9 1 4 1.3e-11 1.6e-08 34.7 1.9 3 51 99 150 97 158 0.79 Drought induced 19 protein (Di19), zinc-binding zf-Di19 PF05605.12 54 ZEB2-234 - 1102 1.6e-08 34.7 1.9 2 4 0.046 59 4.1 5.2 2 50 169 218 168 222 0.74 Drought induced 19 protein (Di19), zinc-binding zf-Di19 PF05605.12 54 ZEB2-234 - 1102 1.6e-08 34.7 1.9 3 4 6.1 7.9e+03 -2.7 1.2 3 12 469 478 467 480 0.85 Drought induced 19 protein (Di19), zinc-binding zf-Di19 PF05605.12 54 ZEB2-234 - 1102 1.6e-08 34.7 1.9 4 4 0.0057 7.3 7.0 5.0 3 51 887 936 885 939 0.74 Drought induced 19 protein (Di19), zinc-binding zf-C2H2_jaz PF12171.8 27 ZEB2-234 - 1102 3.2e-08 33.7 56.3 1 9 0.00014 0.17 12.2 0.0 3 22 100 119 99 119 0.95 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZEB2-234 - 1102 3.2e-08 33.7 56.3 2 9 0.002 2.5 8.5 0.2 2 25 129 152 128 152 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZEB2-234 - 1102 3.2e-08 33.7 56.3 3 9 0.018 23 5.4 3.3 1 22 169 190 169 190 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZEB2-234 - 1102 3.2e-08 33.7 56.3 4 9 7.2e-06 0.0092 16.3 1.9 2 25 198 221 197 221 0.96 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZEB2-234 - 1102 3.2e-08 33.7 56.3 5 9 0.32 4.1e+02 1.4 0.0 2 21 469 488 468 489 0.80 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZEB2-234 - 1102 3.2e-08 33.7 56.3 6 9 1.1 1.4e+03 -0.3 0.4 9 19 755 765 754 765 0.91 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZEB2-234 - 1102 3.2e-08 33.7 56.3 7 9 1.8e-05 0.023 15.0 1.0 2 21 887 906 886 909 0.91 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZEB2-234 - 1102 3.2e-08 33.7 56.3 8 9 0.14 1.8e+02 2.6 4.7 4 20 917 933 914 933 0.89 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZEB2-234 - 1102 3.2e-08 33.7 56.3 9 9 0.095 1.2e+02 3.1 0.3 4 22 945 963 942 963 0.90 Zinc-finger double-stranded RNA-binding zf-met PF12874.7 25 ZEB2-234 - 1102 3.1e-07 30.6 54.5 1 8 0.41 5.3e+02 1.2 0.0 2 20 100 118 99 119 0.90 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZEB2-234 - 1102 3.1e-07 30.6 54.5 2 8 9.4e-05 0.12 12.8 0.4 1 24 129 152 129 152 0.91 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZEB2-234 - 1102 3.1e-07 30.6 54.5 3 8 0.046 58 4.3 1.8 1 21 170 190 170 192 0.93 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZEB2-234 - 1102 3.1e-07 30.6 54.5 4 8 3e-05 0.038 14.4 3.1 1 24 198 221 198 221 0.95 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZEB2-234 - 1102 3.1e-07 30.6 54.5 5 8 0.21 2.7e+02 2.2 0.0 1 20 469 488 469 489 0.90 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZEB2-234 - 1102 3.1e-07 30.6 54.5 6 8 0.00015 0.19 12.2 0.4 1 19 887 905 887 907 0.92 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZEB2-234 - 1102 3.1e-07 30.6 54.5 7 8 0.18 2.3e+02 2.4 6.9 2 22 916 934 915 937 0.88 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZEB2-234 - 1102 3.1e-07 30.6 54.5 8 8 0.0019 2.4 8.7 2.4 1 21 943 963 943 965 0.91 Zinc-finger of C2H2 type # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZEB2-234.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZEB2-234.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZEB2-234.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZEB2-234.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZEB2-234.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:58:29 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZEB2-235.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZEB2-235.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZEB2-235.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZEB2-235.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZEB2-235.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:58:29 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZEB2-236 - 1239 2.4e-27 94.1 59.0 1 8 0.024 33 5.2 0.1 15 26 211 222 203 222 0.85 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZEB2-236 - 1239 2.4e-27 94.1 59.0 2 8 5.6e-06 0.0078 16.6 1.6 1 25 225 251 225 252 0.77 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZEB2-236 - 1239 2.4e-27 94.1 59.0 3 8 5.8e-06 0.0081 16.6 0.5 2 26 256 293 255 293 0.80 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZEB2-236 - 1239 2.4e-27 94.1 59.0 4 8 2.5e-06 0.0034 17.7 3.6 2 26 297 346 296 346 0.69 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZEB2-236 - 1239 2.4e-27 94.1 59.0 5 8 0.013 17 6.0 0.3 8 24 599 615 596 615 0.86 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZEB2-236 - 1239 2.4e-27 94.1 59.0 6 8 0.0039 5.4 7.6 0.3 14 24 1023 1033 1013 1035 0.77 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZEB2-236 - 1239 2.4e-27 94.1 59.0 7 8 2.6e-09 3.6e-06 27.1 5.4 2 26 1039 1063 1038 1063 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZEB2-236 - 1239 2.4e-27 94.1 59.0 8 8 6.7e-10 9.2e-07 29.0 2.7 1 26 1066 1091 1066 1091 0.93 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZEB2-236 - 1239 8.7e-25 85.8 72.9 1 8 1.3e-06 0.0018 18.6 1.0 2 23 212 234 211 234 0.95 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZEB2-236 - 1239 8.7e-25 85.8 72.9 2 8 7.7e-07 0.0011 19.3 1.2 1 23 241 263 241 263 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZEB2-236 - 1239 8.7e-25 85.8 72.9 3 8 8.8e-08 0.00012 22.3 5.0 1 23 282 304 282 304 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZEB2-236 - 1239 8.7e-25 85.8 72.9 4 8 9.7e-06 0.013 15.9 1.5 1 21 335 355 335 356 0.95 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZEB2-236 - 1239 8.7e-25 85.8 72.9 5 8 0.022 31 5.3 0.5 1 21 606 626 606 627 0.90 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZEB2-236 - 1239 8.7e-25 85.8 72.9 6 8 2.5e-05 0.035 14.6 1.3 1 23 1024 1046 1024 1046 0.94 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZEB2-236 - 1239 8.7e-25 85.8 72.9 7 8 0.0001 0.14 12.7 8.7 1 23 1052 1074 1052 1074 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZEB2-236 - 1239 8.7e-25 85.8 72.9 8 8 7.1e-06 0.0098 16.3 3.2 1 21 1080 1100 1080 1101 0.96 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZEB2-236 - 1239 1.2e-15 56.9 69.7 1 8 4.2e-05 0.057 14.3 0.6 2 24 212 234 211 234 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZEB2-236 - 1239 1.2e-15 56.9 69.7 2 8 4.7e-06 0.0065 17.2 1.2 1 23 241 263 241 264 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZEB2-236 - 1239 1.2e-15 56.9 69.7 3 8 2.4e-05 0.033 15.0 4.4 1 23 282 304 282 305 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZEB2-236 - 1239 1.2e-15 56.9 69.7 4 8 0.0011 1.5 9.9 1.6 1 22 335 356 335 358 0.90 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZEB2-236 - 1239 1.2e-15 56.9 69.7 5 8 0.0059 8.1 7.6 0.6 1 21 606 626 606 627 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZEB2-236 - 1239 1.2e-15 56.9 69.7 6 8 5.9e-05 0.082 13.8 1.0 1 23 1024 1046 1024 1047 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZEB2-236 - 1239 1.2e-15 56.9 69.7 7 8 0.038 53 5.0 7.7 1 23 1052 1074 1052 1075 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZEB2-236 - 1239 1.2e-15 56.9 69.7 8 8 0.00017 0.23 12.4 2.3 1 21 1080 1100 1080 1102 0.92 C2H2-type zinc finger zf-Di19 PF05605.12 54 ZEB2-236 - 1239 1.8e-08 34.5 1.9 1 5 1.3e-11 1.8e-08 34.5 1.9 3 51 211 262 209 271 0.79 Drought induced 19 protein (Di19), zinc-binding zf-Di19 PF05605.12 54 ZEB2-236 - 1239 1.8e-08 34.5 1.9 2 5 1.1 1.5e+03 -0.5 0.6 2 22 281 302 279 308 0.65 Drought induced 19 protein (Di19), zinc-binding zf-Di19 PF05605.12 54 ZEB2-236 - 1239 1.8e-08 34.5 1.9 3 5 0.07 97 3.4 0.5 3 24 335 357 333 361 0.73 Drought induced 19 protein (Di19), zinc-binding zf-Di19 PF05605.12 54 ZEB2-236 - 1239 1.8e-08 34.5 1.9 4 5 6.5 8.9e+03 -2.9 1.2 3 12 606 615 604 617 0.85 Drought induced 19 protein (Di19), zinc-binding zf-Di19 PF05605.12 54 ZEB2-236 - 1239 1.8e-08 34.5 1.9 5 5 0.0061 8.4 6.8 5.0 3 51 1024 1073 1022 1076 0.74 Drought induced 19 protein (Di19), zinc-binding zf-C2H2_jaz PF12171.8 27 ZEB2-236 - 1239 9e-08 32.2 56.3 1 9 0.00014 0.2 12.0 0.0 3 22 212 231 211 231 0.95 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZEB2-236 - 1239 9e-08 32.2 56.3 2 9 0.0021 2.9 8.3 0.2 2 25 241 264 240 264 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZEB2-236 - 1239 9e-08 32.2 56.3 3 9 0.019 26 5.3 3.3 1 22 281 302 281 302 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZEB2-236 - 1239 9e-08 32.2 56.3 4 9 7.6e-06 0.01 16.1 1.9 2 25 335 358 334 358 0.96 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZEB2-236 - 1239 9e-08 32.2 56.3 5 9 0.34 4.6e+02 1.3 0.0 2 21 606 625 605 626 0.80 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZEB2-236 - 1239 9e-08 32.2 56.3 6 9 1.1 1.6e+03 -0.4 0.4 9 19 892 902 891 902 0.91 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZEB2-236 - 1239 9e-08 32.2 56.3 7 9 1.9e-05 0.026 14.8 1.0 2 21 1024 1043 1023 1046 0.91 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZEB2-236 - 1239 9e-08 32.2 56.3 8 9 0.15 2e+02 2.4 4.7 4 20 1054 1070 1051 1070 0.89 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZEB2-236 - 1239 9e-08 32.2 56.3 9 9 0.1 1.4e+02 2.9 0.3 4 22 1082 1100 1079 1100 0.90 Zinc-finger double-stranded RNA-binding zf-met PF12874.7 25 ZEB2-236 - 1239 8e-07 29.3 54.5 1 8 0.43 6e+02 1.0 0.0 2 20 212 230 211 231 0.90 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZEB2-236 - 1239 8e-07 29.3 54.5 2 8 9.9e-05 0.14 12.6 0.4 1 24 241 264 241 264 0.91 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZEB2-236 - 1239 8e-07 29.3 54.5 3 8 0.048 66 4.1 1.8 1 21 282 302 282 304 0.93 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZEB2-236 - 1239 8e-07 29.3 54.5 4 8 3.1e-05 0.043 14.2 3.1 1 24 335 358 335 358 0.95 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZEB2-236 - 1239 8e-07 29.3 54.5 5 8 0.22 3e+02 2.0 0.0 1 20 606 625 606 626 0.90 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZEB2-236 - 1239 8e-07 29.3 54.5 6 8 0.00015 0.21 12.0 0.4 1 19 1024 1042 1024 1044 0.92 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZEB2-236 - 1239 8e-07 29.3 54.5 7 8 0.19 2.6e+02 2.2 6.9 2 22 1053 1071 1052 1074 0.88 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZEB2-236 - 1239 8e-07 29.3 54.5 8 8 0.002 2.8 8.5 2.4 1 21 1080 1100 1080 1102 0.91 Zinc-finger of C2H2 type # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZEB2-236.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZEB2-236.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZEB2-236.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZEB2-236.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZEB2-236.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:58:29 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZEB2-237 - 1102 7.7e-32 108.3 60.7 1 8 0.022 29 5.3 0.1 15 26 99 110 91 110 0.85 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZEB2-237 - 1102 7.7e-32 108.3 60.7 2 8 5.3e-06 0.0068 16.8 1.6 1 25 113 139 113 140 0.77 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZEB2-237 - 1102 7.7e-32 108.3 60.7 3 8 5.5e-06 0.007 16.7 0.5 2 26 144 181 143 181 0.80 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZEB2-237 - 1102 7.7e-32 108.3 60.7 4 8 9e-11 1.1e-07 31.9 5.1 1 26 184 209 184 209 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZEB2-237 - 1102 7.7e-32 108.3 60.7 5 8 0.012 15 6.2 0.3 8 24 462 478 459 478 0.86 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZEB2-237 - 1102 7.7e-32 108.3 60.7 6 8 0.0037 4.7 7.8 0.3 14 24 886 896 876 898 0.77 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZEB2-237 - 1102 7.7e-32 108.3 60.7 7 8 2.5e-09 3.2e-06 27.3 5.4 2 26 902 926 901 926 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZEB2-237 - 1102 7.7e-32 108.3 60.7 8 8 6.3e-10 8.1e-07 29.2 2.7 1 26 929 954 929 954 0.93 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZEB2-237 - 1102 3e-25 87.2 72.9 1 8 1.2e-06 0.0016 18.8 1.0 2 23 100 122 99 122 0.95 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZEB2-237 - 1102 3e-25 87.2 72.9 2 8 7.3e-07 0.00094 19.5 1.2 1 23 129 151 129 151 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZEB2-237 - 1102 3e-25 87.2 72.9 3 8 8.3e-08 0.00011 22.5 5.0 1 23 170 192 170 192 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZEB2-237 - 1102 3e-25 87.2 72.9 4 8 9.2e-06 0.012 16.1 1.5 1 21 198 218 198 219 0.95 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZEB2-237 - 1102 3e-25 87.2 72.9 5 8 0.021 27 5.5 0.5 1 21 469 489 469 490 0.90 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZEB2-237 - 1102 3e-25 87.2 72.9 6 8 2.4e-05 0.031 14.7 1.3 1 23 887 909 887 909 0.94 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZEB2-237 - 1102 3e-25 87.2 72.9 7 8 9.6e-05 0.12 12.9 8.7 1 23 915 937 915 937 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZEB2-237 - 1102 3e-25 87.2 72.9 8 8 6.7e-06 0.0086 16.5 3.2 1 21 943 963 943 964 0.96 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZEB2-237 - 1102 4e-16 58.3 69.7 1 8 3.9e-05 0.05 14.4 0.6 2 24 100 122 99 122 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZEB2-237 - 1102 4e-16 58.3 69.7 2 8 4.5e-06 0.0057 17.4 1.2 1 23 129 151 129 152 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZEB2-237 - 1102 4e-16 58.3 69.7 3 8 2.3e-05 0.029 15.2 4.4 1 23 170 192 170 193 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZEB2-237 - 1102 4e-16 58.3 69.7 4 8 0.001 1.3 10.0 1.6 1 22 198 219 198 221 0.90 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZEB2-237 - 1102 4e-16 58.3 69.7 5 8 0.0056 7.1 7.8 0.6 1 21 469 489 469 490 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZEB2-237 - 1102 4e-16 58.3 69.7 6 8 5.6e-05 0.072 14.0 1.0 1 23 887 909 887 910 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZEB2-237 - 1102 4e-16 58.3 69.7 7 8 0.036 47 5.2 7.7 1 23 915 937 915 938 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZEB2-237 - 1102 4e-16 58.3 69.7 8 8 0.00016 0.2 12.6 2.3 1 21 943 963 943 965 0.92 C2H2-type zinc finger zf-Di19 PF05605.12 54 ZEB2-237 - 1102 1.6e-08 34.7 1.9 1 4 1.3e-11 1.6e-08 34.7 1.9 3 51 99 150 97 158 0.79 Drought induced 19 protein (Di19), zinc-binding zf-Di19 PF05605.12 54 ZEB2-237 - 1102 1.6e-08 34.7 1.9 2 4 0.046 59 4.1 5.2 2 50 169 218 168 222 0.74 Drought induced 19 protein (Di19), zinc-binding zf-Di19 PF05605.12 54 ZEB2-237 - 1102 1.6e-08 34.7 1.9 3 4 6.1 7.9e+03 -2.7 1.2 3 12 469 478 467 480 0.85 Drought induced 19 protein (Di19), zinc-binding zf-Di19 PF05605.12 54 ZEB2-237 - 1102 1.6e-08 34.7 1.9 4 4 0.0057 7.3 7.0 5.0 3 51 887 936 885 939 0.74 Drought induced 19 protein (Di19), zinc-binding zf-C2H2_jaz PF12171.8 27 ZEB2-237 - 1102 3.2e-08 33.7 56.3 1 9 0.00014 0.17 12.2 0.0 3 22 100 119 99 119 0.95 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZEB2-237 - 1102 3.2e-08 33.7 56.3 2 9 0.002 2.5 8.5 0.2 2 25 129 152 128 152 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZEB2-237 - 1102 3.2e-08 33.7 56.3 3 9 0.018 23 5.4 3.3 1 22 169 190 169 190 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZEB2-237 - 1102 3.2e-08 33.7 56.3 4 9 7.2e-06 0.0092 16.3 1.9 2 25 198 221 197 221 0.96 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZEB2-237 - 1102 3.2e-08 33.7 56.3 5 9 0.32 4.1e+02 1.4 0.0 2 21 469 488 468 489 0.80 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZEB2-237 - 1102 3.2e-08 33.7 56.3 6 9 1.1 1.4e+03 -0.3 0.4 9 19 755 765 754 765 0.91 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZEB2-237 - 1102 3.2e-08 33.7 56.3 7 9 1.8e-05 0.023 15.0 1.0 2 21 887 906 886 909 0.91 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZEB2-237 - 1102 3.2e-08 33.7 56.3 8 9 0.14 1.8e+02 2.6 4.7 4 20 917 933 914 933 0.89 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZEB2-237 - 1102 3.2e-08 33.7 56.3 9 9 0.095 1.2e+02 3.1 0.3 4 22 945 963 942 963 0.90 Zinc-finger double-stranded RNA-binding zf-met PF12874.7 25 ZEB2-237 - 1102 3.1e-07 30.6 54.5 1 8 0.41 5.3e+02 1.2 0.0 2 20 100 118 99 119 0.90 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZEB2-237 - 1102 3.1e-07 30.6 54.5 2 8 9.4e-05 0.12 12.8 0.4 1 24 129 152 129 152 0.91 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZEB2-237 - 1102 3.1e-07 30.6 54.5 3 8 0.046 58 4.3 1.8 1 21 170 190 170 192 0.93 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZEB2-237 - 1102 3.1e-07 30.6 54.5 4 8 3e-05 0.038 14.4 3.1 1 24 198 221 198 221 0.95 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZEB2-237 - 1102 3.1e-07 30.6 54.5 5 8 0.21 2.7e+02 2.2 0.0 1 20 469 488 469 489 0.90 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZEB2-237 - 1102 3.1e-07 30.6 54.5 6 8 0.00015 0.19 12.2 0.4 1 19 887 905 887 907 0.92 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZEB2-237 - 1102 3.1e-07 30.6 54.5 7 8 0.18 2.3e+02 2.4 6.9 2 22 916 934 915 937 0.88 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZEB2-237 - 1102 3.1e-07 30.6 54.5 8 8 0.0019 2.4 8.7 2.4 1 21 943 963 943 965 0.91 Zinc-finger of C2H2 type # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZEB2-237.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZEB2-237.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZEB2-237.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZEB2-237.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZEB2-237.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:58:30 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZEB2-238 - 1102 7.7e-32 108.3 60.7 1 8 0.022 29 5.3 0.1 15 26 99 110 91 110 0.85 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZEB2-238 - 1102 7.7e-32 108.3 60.7 2 8 5.3e-06 0.0068 16.8 1.6 1 25 113 139 113 140 0.77 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZEB2-238 - 1102 7.7e-32 108.3 60.7 3 8 5.5e-06 0.007 16.7 0.5 2 26 144 181 143 181 0.80 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZEB2-238 - 1102 7.7e-32 108.3 60.7 4 8 9e-11 1.1e-07 31.9 5.1 1 26 184 209 184 209 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZEB2-238 - 1102 7.7e-32 108.3 60.7 5 8 0.012 15 6.2 0.3 8 24 462 478 459 478 0.86 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZEB2-238 - 1102 7.7e-32 108.3 60.7 6 8 0.0037 4.7 7.8 0.3 14 24 886 896 876 898 0.77 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZEB2-238 - 1102 7.7e-32 108.3 60.7 7 8 2.5e-09 3.2e-06 27.3 5.4 2 26 902 926 901 926 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZEB2-238 - 1102 7.7e-32 108.3 60.7 8 8 6.3e-10 8.1e-07 29.2 2.7 1 26 929 954 929 954 0.93 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZEB2-238 - 1102 3e-25 87.2 72.9 1 8 1.2e-06 0.0016 18.8 1.0 2 23 100 122 99 122 0.95 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZEB2-238 - 1102 3e-25 87.2 72.9 2 8 7.3e-07 0.00094 19.5 1.2 1 23 129 151 129 151 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZEB2-238 - 1102 3e-25 87.2 72.9 3 8 8.3e-08 0.00011 22.5 5.0 1 23 170 192 170 192 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZEB2-238 - 1102 3e-25 87.2 72.9 4 8 9.2e-06 0.012 16.1 1.5 1 21 198 218 198 219 0.95 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZEB2-238 - 1102 3e-25 87.2 72.9 5 8 0.021 27 5.5 0.5 1 21 469 489 469 490 0.90 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZEB2-238 - 1102 3e-25 87.2 72.9 6 8 2.4e-05 0.031 14.7 1.3 1 23 887 909 887 909 0.94 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZEB2-238 - 1102 3e-25 87.2 72.9 7 8 9.6e-05 0.12 12.9 8.7 1 23 915 937 915 937 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZEB2-238 - 1102 3e-25 87.2 72.9 8 8 6.7e-06 0.0086 16.5 3.2 1 21 943 963 943 964 0.96 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZEB2-238 - 1102 4e-16 58.3 69.7 1 8 3.9e-05 0.05 14.4 0.6 2 24 100 122 99 122 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZEB2-238 - 1102 4e-16 58.3 69.7 2 8 4.5e-06 0.0057 17.4 1.2 1 23 129 151 129 152 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZEB2-238 - 1102 4e-16 58.3 69.7 3 8 2.3e-05 0.029 15.2 4.4 1 23 170 192 170 193 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZEB2-238 - 1102 4e-16 58.3 69.7 4 8 0.001 1.3 10.0 1.6 1 22 198 219 198 221 0.90 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZEB2-238 - 1102 4e-16 58.3 69.7 5 8 0.0056 7.1 7.8 0.6 1 21 469 489 469 490 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZEB2-238 - 1102 4e-16 58.3 69.7 6 8 5.6e-05 0.072 14.0 1.0 1 23 887 909 887 910 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZEB2-238 - 1102 4e-16 58.3 69.7 7 8 0.036 47 5.2 7.7 1 23 915 937 915 938 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZEB2-238 - 1102 4e-16 58.3 69.7 8 8 0.00016 0.2 12.6 2.3 1 21 943 963 943 965 0.92 C2H2-type zinc finger zf-Di19 PF05605.12 54 ZEB2-238 - 1102 1.6e-08 34.7 1.9 1 4 1.3e-11 1.6e-08 34.7 1.9 3 51 99 150 97 158 0.79 Drought induced 19 protein (Di19), zinc-binding zf-Di19 PF05605.12 54 ZEB2-238 - 1102 1.6e-08 34.7 1.9 2 4 0.046 59 4.1 5.2 2 50 169 218 168 222 0.74 Drought induced 19 protein (Di19), zinc-binding zf-Di19 PF05605.12 54 ZEB2-238 - 1102 1.6e-08 34.7 1.9 3 4 6.1 7.9e+03 -2.7 1.2 3 12 469 478 467 480 0.85 Drought induced 19 protein (Di19), zinc-binding zf-Di19 PF05605.12 54 ZEB2-238 - 1102 1.6e-08 34.7 1.9 4 4 0.0057 7.3 7.0 5.0 3 51 887 936 885 939 0.74 Drought induced 19 protein (Di19), zinc-binding zf-C2H2_jaz PF12171.8 27 ZEB2-238 - 1102 3.2e-08 33.7 56.3 1 9 0.00014 0.17 12.2 0.0 3 22 100 119 99 119 0.95 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZEB2-238 - 1102 3.2e-08 33.7 56.3 2 9 0.002 2.5 8.5 0.2 2 25 129 152 128 152 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZEB2-238 - 1102 3.2e-08 33.7 56.3 3 9 0.018 23 5.4 3.3 1 22 169 190 169 190 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZEB2-238 - 1102 3.2e-08 33.7 56.3 4 9 7.2e-06 0.0092 16.3 1.9 2 25 198 221 197 221 0.96 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZEB2-238 - 1102 3.2e-08 33.7 56.3 5 9 0.32 4.1e+02 1.4 0.0 2 21 469 488 468 489 0.80 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZEB2-238 - 1102 3.2e-08 33.7 56.3 6 9 1.1 1.4e+03 -0.3 0.4 9 19 755 765 754 765 0.91 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZEB2-238 - 1102 3.2e-08 33.7 56.3 7 9 1.8e-05 0.023 15.0 1.0 2 21 887 906 886 909 0.91 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZEB2-238 - 1102 3.2e-08 33.7 56.3 8 9 0.14 1.8e+02 2.6 4.7 4 20 917 933 914 933 0.89 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZEB2-238 - 1102 3.2e-08 33.7 56.3 9 9 0.095 1.2e+02 3.1 0.3 4 22 945 963 942 963 0.90 Zinc-finger double-stranded RNA-binding zf-met PF12874.7 25 ZEB2-238 - 1102 3.1e-07 30.6 54.5 1 8 0.41 5.3e+02 1.2 0.0 2 20 100 118 99 119 0.90 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZEB2-238 - 1102 3.1e-07 30.6 54.5 2 8 9.4e-05 0.12 12.8 0.4 1 24 129 152 129 152 0.91 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZEB2-238 - 1102 3.1e-07 30.6 54.5 3 8 0.046 58 4.3 1.8 1 21 170 190 170 192 0.93 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZEB2-238 - 1102 3.1e-07 30.6 54.5 4 8 3e-05 0.038 14.4 3.1 1 24 198 221 198 221 0.95 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZEB2-238 - 1102 3.1e-07 30.6 54.5 5 8 0.21 2.7e+02 2.2 0.0 1 20 469 488 469 489 0.90 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZEB2-238 - 1102 3.1e-07 30.6 54.5 6 8 0.00015 0.19 12.2 0.4 1 19 887 905 887 907 0.92 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZEB2-238 - 1102 3.1e-07 30.6 54.5 7 8 0.18 2.3e+02 2.4 6.9 2 22 916 934 915 937 0.88 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZEB2-238 - 1102 3.1e-07 30.6 54.5 8 8 0.0019 2.4 8.7 2.4 1 21 943 963 943 965 0.91 Zinc-finger of C2H2 type # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZEB2-238.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZEB2-238.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZEB2-238.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZEB2-238.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZEB2-238.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:58:30 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZEB2-239 - 1102 7.7e-32 108.3 60.7 1 8 0.022 29 5.3 0.1 15 26 99 110 91 110 0.85 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZEB2-239 - 1102 7.7e-32 108.3 60.7 2 8 5.3e-06 0.0068 16.8 1.6 1 25 113 139 113 140 0.77 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZEB2-239 - 1102 7.7e-32 108.3 60.7 3 8 5.5e-06 0.007 16.7 0.5 2 26 144 181 143 181 0.80 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZEB2-239 - 1102 7.7e-32 108.3 60.7 4 8 9e-11 1.1e-07 31.9 5.1 1 26 184 209 184 209 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZEB2-239 - 1102 7.7e-32 108.3 60.7 5 8 0.012 15 6.2 0.3 8 24 462 478 459 478 0.86 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZEB2-239 - 1102 7.7e-32 108.3 60.7 6 8 0.0037 4.7 7.8 0.3 14 24 886 896 876 898 0.77 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZEB2-239 - 1102 7.7e-32 108.3 60.7 7 8 2.5e-09 3.2e-06 27.3 5.4 2 26 902 926 901 926 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZEB2-239 - 1102 7.7e-32 108.3 60.7 8 8 6.3e-10 8.1e-07 29.2 2.7 1 26 929 954 929 954 0.93 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZEB2-239 - 1102 3e-25 87.2 72.9 1 8 1.2e-06 0.0016 18.8 1.0 2 23 100 122 99 122 0.95 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZEB2-239 - 1102 3e-25 87.2 72.9 2 8 7.3e-07 0.00094 19.5 1.2 1 23 129 151 129 151 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZEB2-239 - 1102 3e-25 87.2 72.9 3 8 8.3e-08 0.00011 22.5 5.0 1 23 170 192 170 192 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZEB2-239 - 1102 3e-25 87.2 72.9 4 8 9.2e-06 0.012 16.1 1.5 1 21 198 218 198 219 0.95 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZEB2-239 - 1102 3e-25 87.2 72.9 5 8 0.021 27 5.5 0.5 1 21 469 489 469 490 0.90 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZEB2-239 - 1102 3e-25 87.2 72.9 6 8 2.4e-05 0.031 14.7 1.3 1 23 887 909 887 909 0.94 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZEB2-239 - 1102 3e-25 87.2 72.9 7 8 9.6e-05 0.12 12.9 8.7 1 23 915 937 915 937 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZEB2-239 - 1102 3e-25 87.2 72.9 8 8 6.7e-06 0.0086 16.5 3.2 1 21 943 963 943 964 0.96 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZEB2-239 - 1102 4e-16 58.3 69.7 1 8 3.9e-05 0.05 14.4 0.6 2 24 100 122 99 122 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZEB2-239 - 1102 4e-16 58.3 69.7 2 8 4.5e-06 0.0057 17.4 1.2 1 23 129 151 129 152 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZEB2-239 - 1102 4e-16 58.3 69.7 3 8 2.3e-05 0.029 15.2 4.4 1 23 170 192 170 193 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZEB2-239 - 1102 4e-16 58.3 69.7 4 8 0.001 1.3 10.0 1.6 1 22 198 219 198 221 0.90 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZEB2-239 - 1102 4e-16 58.3 69.7 5 8 0.0056 7.1 7.8 0.6 1 21 469 489 469 490 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZEB2-239 - 1102 4e-16 58.3 69.7 6 8 5.6e-05 0.072 14.0 1.0 1 23 887 909 887 910 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZEB2-239 - 1102 4e-16 58.3 69.7 7 8 0.036 47 5.2 7.7 1 23 915 937 915 938 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZEB2-239 - 1102 4e-16 58.3 69.7 8 8 0.00016 0.2 12.6 2.3 1 21 943 963 943 965 0.92 C2H2-type zinc finger zf-Di19 PF05605.12 54 ZEB2-239 - 1102 1.6e-08 34.7 1.9 1 4 1.3e-11 1.6e-08 34.7 1.9 3 51 99 150 97 158 0.79 Drought induced 19 protein (Di19), zinc-binding zf-Di19 PF05605.12 54 ZEB2-239 - 1102 1.6e-08 34.7 1.9 2 4 0.046 59 4.1 5.2 2 50 169 218 168 222 0.74 Drought induced 19 protein (Di19), zinc-binding zf-Di19 PF05605.12 54 ZEB2-239 - 1102 1.6e-08 34.7 1.9 3 4 6.1 7.9e+03 -2.7 1.2 3 12 469 478 467 480 0.85 Drought induced 19 protein (Di19), zinc-binding zf-Di19 PF05605.12 54 ZEB2-239 - 1102 1.6e-08 34.7 1.9 4 4 0.0057 7.3 7.0 5.0 3 51 887 936 885 939 0.74 Drought induced 19 protein (Di19), zinc-binding zf-C2H2_jaz PF12171.8 27 ZEB2-239 - 1102 3.2e-08 33.7 56.3 1 9 0.00014 0.17 12.2 0.0 3 22 100 119 99 119 0.95 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZEB2-239 - 1102 3.2e-08 33.7 56.3 2 9 0.002 2.5 8.5 0.2 2 25 129 152 128 152 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZEB2-239 - 1102 3.2e-08 33.7 56.3 3 9 0.018 23 5.4 3.3 1 22 169 190 169 190 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZEB2-239 - 1102 3.2e-08 33.7 56.3 4 9 7.2e-06 0.0092 16.3 1.9 2 25 198 221 197 221 0.96 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZEB2-239 - 1102 3.2e-08 33.7 56.3 5 9 0.32 4.1e+02 1.4 0.0 2 21 469 488 468 489 0.80 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZEB2-239 - 1102 3.2e-08 33.7 56.3 6 9 1.1 1.4e+03 -0.3 0.4 9 19 755 765 754 765 0.91 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZEB2-239 - 1102 3.2e-08 33.7 56.3 7 9 1.8e-05 0.023 15.0 1.0 2 21 887 906 886 909 0.91 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZEB2-239 - 1102 3.2e-08 33.7 56.3 8 9 0.14 1.8e+02 2.6 4.7 4 20 917 933 914 933 0.89 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZEB2-239 - 1102 3.2e-08 33.7 56.3 9 9 0.095 1.2e+02 3.1 0.3 4 22 945 963 942 963 0.90 Zinc-finger double-stranded RNA-binding zf-met PF12874.7 25 ZEB2-239 - 1102 3.1e-07 30.6 54.5 1 8 0.41 5.3e+02 1.2 0.0 2 20 100 118 99 119 0.90 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZEB2-239 - 1102 3.1e-07 30.6 54.5 2 8 9.4e-05 0.12 12.8 0.4 1 24 129 152 129 152 0.91 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZEB2-239 - 1102 3.1e-07 30.6 54.5 3 8 0.046 58 4.3 1.8 1 21 170 190 170 192 0.93 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZEB2-239 - 1102 3.1e-07 30.6 54.5 4 8 3e-05 0.038 14.4 3.1 1 24 198 221 198 221 0.95 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZEB2-239 - 1102 3.1e-07 30.6 54.5 5 8 0.21 2.7e+02 2.2 0.0 1 20 469 488 469 489 0.90 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZEB2-239 - 1102 3.1e-07 30.6 54.5 6 8 0.00015 0.19 12.2 0.4 1 19 887 905 887 907 0.92 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZEB2-239 - 1102 3.1e-07 30.6 54.5 7 8 0.18 2.3e+02 2.4 6.9 2 22 916 934 915 937 0.88 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZEB2-239 - 1102 3.1e-07 30.6 54.5 8 8 0.0019 2.4 8.7 2.4 1 21 943 963 943 965 0.91 Zinc-finger of C2H2 type # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZEB2-239.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZEB2-239.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZEB2-239.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZEB2-239.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZEB2-239.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:58:31 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZEB2-240.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZEB2-240.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZEB2-240.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZEB2-240.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZEB2-240.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:58:31 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZEB2-241 - 1102 7.7e-32 108.3 60.7 1 8 0.022 29 5.3 0.1 15 26 99 110 91 110 0.85 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZEB2-241 - 1102 7.7e-32 108.3 60.7 2 8 5.3e-06 0.0068 16.8 1.6 1 25 113 139 113 140 0.77 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZEB2-241 - 1102 7.7e-32 108.3 60.7 3 8 5.5e-06 0.007 16.7 0.5 2 26 144 181 143 181 0.80 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZEB2-241 - 1102 7.7e-32 108.3 60.7 4 8 9e-11 1.1e-07 31.9 5.1 1 26 184 209 184 209 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZEB2-241 - 1102 7.7e-32 108.3 60.7 5 8 0.012 15 6.2 0.3 8 24 462 478 459 478 0.86 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZEB2-241 - 1102 7.7e-32 108.3 60.7 6 8 0.0037 4.7 7.8 0.3 14 24 886 896 876 898 0.77 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZEB2-241 - 1102 7.7e-32 108.3 60.7 7 8 2.5e-09 3.2e-06 27.3 5.4 2 26 902 926 901 926 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZEB2-241 - 1102 7.7e-32 108.3 60.7 8 8 6.3e-10 8.1e-07 29.2 2.7 1 26 929 954 929 954 0.93 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZEB2-241 - 1102 3e-25 87.2 72.9 1 8 1.2e-06 0.0016 18.8 1.0 2 23 100 122 99 122 0.95 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZEB2-241 - 1102 3e-25 87.2 72.9 2 8 7.3e-07 0.00094 19.5 1.2 1 23 129 151 129 151 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZEB2-241 - 1102 3e-25 87.2 72.9 3 8 8.3e-08 0.00011 22.5 5.0 1 23 170 192 170 192 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZEB2-241 - 1102 3e-25 87.2 72.9 4 8 9.2e-06 0.012 16.1 1.5 1 21 198 218 198 219 0.95 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZEB2-241 - 1102 3e-25 87.2 72.9 5 8 0.021 27 5.5 0.5 1 21 469 489 469 490 0.90 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZEB2-241 - 1102 3e-25 87.2 72.9 6 8 2.4e-05 0.031 14.7 1.3 1 23 887 909 887 909 0.94 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZEB2-241 - 1102 3e-25 87.2 72.9 7 8 9.6e-05 0.12 12.9 8.7 1 23 915 937 915 937 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZEB2-241 - 1102 3e-25 87.2 72.9 8 8 6.7e-06 0.0086 16.5 3.2 1 21 943 963 943 964 0.96 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZEB2-241 - 1102 4e-16 58.3 69.7 1 8 3.9e-05 0.05 14.4 0.6 2 24 100 122 99 122 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZEB2-241 - 1102 4e-16 58.3 69.7 2 8 4.5e-06 0.0057 17.4 1.2 1 23 129 151 129 152 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZEB2-241 - 1102 4e-16 58.3 69.7 3 8 2.3e-05 0.029 15.2 4.4 1 23 170 192 170 193 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZEB2-241 - 1102 4e-16 58.3 69.7 4 8 0.001 1.3 10.0 1.6 1 22 198 219 198 221 0.90 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZEB2-241 - 1102 4e-16 58.3 69.7 5 8 0.0056 7.1 7.8 0.6 1 21 469 489 469 490 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZEB2-241 - 1102 4e-16 58.3 69.7 6 8 5.6e-05 0.072 14.0 1.0 1 23 887 909 887 910 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZEB2-241 - 1102 4e-16 58.3 69.7 7 8 0.036 47 5.2 7.7 1 23 915 937 915 938 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZEB2-241 - 1102 4e-16 58.3 69.7 8 8 0.00016 0.2 12.6 2.3 1 21 943 963 943 965 0.92 C2H2-type zinc finger zf-Di19 PF05605.12 54 ZEB2-241 - 1102 1.6e-08 34.7 1.9 1 4 1.3e-11 1.6e-08 34.7 1.9 3 51 99 150 97 158 0.79 Drought induced 19 protein (Di19), zinc-binding zf-Di19 PF05605.12 54 ZEB2-241 - 1102 1.6e-08 34.7 1.9 2 4 0.046 59 4.1 5.2 2 50 169 218 168 222 0.74 Drought induced 19 protein (Di19), zinc-binding zf-Di19 PF05605.12 54 ZEB2-241 - 1102 1.6e-08 34.7 1.9 3 4 6.1 7.9e+03 -2.7 1.2 3 12 469 478 467 480 0.85 Drought induced 19 protein (Di19), zinc-binding zf-Di19 PF05605.12 54 ZEB2-241 - 1102 1.6e-08 34.7 1.9 4 4 0.0057 7.3 7.0 5.0 3 51 887 936 885 939 0.74 Drought induced 19 protein (Di19), zinc-binding zf-C2H2_jaz PF12171.8 27 ZEB2-241 - 1102 3.2e-08 33.7 56.3 1 9 0.00014 0.17 12.2 0.0 3 22 100 119 99 119 0.95 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZEB2-241 - 1102 3.2e-08 33.7 56.3 2 9 0.002 2.5 8.5 0.2 2 25 129 152 128 152 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZEB2-241 - 1102 3.2e-08 33.7 56.3 3 9 0.018 23 5.4 3.3 1 22 169 190 169 190 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZEB2-241 - 1102 3.2e-08 33.7 56.3 4 9 7.2e-06 0.0092 16.3 1.9 2 25 198 221 197 221 0.96 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZEB2-241 - 1102 3.2e-08 33.7 56.3 5 9 0.32 4.1e+02 1.4 0.0 2 21 469 488 468 489 0.80 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZEB2-241 - 1102 3.2e-08 33.7 56.3 6 9 1.1 1.4e+03 -0.3 0.4 9 19 755 765 754 765 0.91 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZEB2-241 - 1102 3.2e-08 33.7 56.3 7 9 1.8e-05 0.023 15.0 1.0 2 21 887 906 886 909 0.91 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZEB2-241 - 1102 3.2e-08 33.7 56.3 8 9 0.14 1.8e+02 2.6 4.7 4 20 917 933 914 933 0.89 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZEB2-241 - 1102 3.2e-08 33.7 56.3 9 9 0.095 1.2e+02 3.1 0.3 4 22 945 963 942 963 0.90 Zinc-finger double-stranded RNA-binding zf-met PF12874.7 25 ZEB2-241 - 1102 3.1e-07 30.6 54.5 1 8 0.41 5.3e+02 1.2 0.0 2 20 100 118 99 119 0.90 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZEB2-241 - 1102 3.1e-07 30.6 54.5 2 8 9.4e-05 0.12 12.8 0.4 1 24 129 152 129 152 0.91 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZEB2-241 - 1102 3.1e-07 30.6 54.5 3 8 0.046 58 4.3 1.8 1 21 170 190 170 192 0.93 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZEB2-241 - 1102 3.1e-07 30.6 54.5 4 8 3e-05 0.038 14.4 3.1 1 24 198 221 198 221 0.95 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZEB2-241 - 1102 3.1e-07 30.6 54.5 5 8 0.21 2.7e+02 2.2 0.0 1 20 469 488 469 489 0.90 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZEB2-241 - 1102 3.1e-07 30.6 54.5 6 8 0.00015 0.19 12.2 0.4 1 19 887 905 887 907 0.92 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZEB2-241 - 1102 3.1e-07 30.6 54.5 7 8 0.18 2.3e+02 2.4 6.9 2 22 916 934 915 937 0.88 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZEB2-241 - 1102 3.1e-07 30.6 54.5 8 8 0.0019 2.4 8.7 2.4 1 21 943 963 943 965 0.91 Zinc-finger of C2H2 type # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZEB2-241.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZEB2-241.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZEB2-241.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZEB2-241.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZEB2-241.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:58:31 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZEB2-244 - 1102 7.7e-32 108.3 60.7 1 8 0.022 29 5.3 0.1 15 26 99 110 91 110 0.85 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZEB2-244 - 1102 7.7e-32 108.3 60.7 2 8 5.3e-06 0.0068 16.8 1.6 1 25 113 139 113 140 0.77 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZEB2-244 - 1102 7.7e-32 108.3 60.7 3 8 5.5e-06 0.007 16.7 0.5 2 26 144 181 143 181 0.80 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZEB2-244 - 1102 7.7e-32 108.3 60.7 4 8 9e-11 1.1e-07 31.9 5.1 1 26 184 209 184 209 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZEB2-244 - 1102 7.7e-32 108.3 60.7 5 8 0.012 15 6.2 0.3 8 24 462 478 459 478 0.86 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZEB2-244 - 1102 7.7e-32 108.3 60.7 6 8 0.0037 4.7 7.8 0.3 14 24 886 896 876 898 0.77 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZEB2-244 - 1102 7.7e-32 108.3 60.7 7 8 2.5e-09 3.2e-06 27.3 5.4 2 26 902 926 901 926 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZEB2-244 - 1102 7.7e-32 108.3 60.7 8 8 6.3e-10 8.1e-07 29.2 2.7 1 26 929 954 929 954 0.93 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZEB2-244 - 1102 3e-25 87.2 72.9 1 8 1.2e-06 0.0016 18.8 1.0 2 23 100 122 99 122 0.95 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZEB2-244 - 1102 3e-25 87.2 72.9 2 8 7.3e-07 0.00094 19.5 1.2 1 23 129 151 129 151 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZEB2-244 - 1102 3e-25 87.2 72.9 3 8 8.3e-08 0.00011 22.5 5.0 1 23 170 192 170 192 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZEB2-244 - 1102 3e-25 87.2 72.9 4 8 9.2e-06 0.012 16.1 1.5 1 21 198 218 198 219 0.95 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZEB2-244 - 1102 3e-25 87.2 72.9 5 8 0.021 27 5.5 0.5 1 21 469 489 469 490 0.90 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZEB2-244 - 1102 3e-25 87.2 72.9 6 8 2.4e-05 0.031 14.7 1.3 1 23 887 909 887 909 0.94 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZEB2-244 - 1102 3e-25 87.2 72.9 7 8 9.6e-05 0.12 12.9 8.7 1 23 915 937 915 937 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZEB2-244 - 1102 3e-25 87.2 72.9 8 8 6.7e-06 0.0086 16.5 3.2 1 21 943 963 943 964 0.96 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZEB2-244 - 1102 4e-16 58.3 69.7 1 8 3.9e-05 0.05 14.4 0.6 2 24 100 122 99 122 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZEB2-244 - 1102 4e-16 58.3 69.7 2 8 4.5e-06 0.0057 17.4 1.2 1 23 129 151 129 152 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZEB2-244 - 1102 4e-16 58.3 69.7 3 8 2.3e-05 0.029 15.2 4.4 1 23 170 192 170 193 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZEB2-244 - 1102 4e-16 58.3 69.7 4 8 0.001 1.3 10.0 1.6 1 22 198 219 198 221 0.90 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZEB2-244 - 1102 4e-16 58.3 69.7 5 8 0.0056 7.1 7.8 0.6 1 21 469 489 469 490 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZEB2-244 - 1102 4e-16 58.3 69.7 6 8 5.6e-05 0.072 14.0 1.0 1 23 887 909 887 910 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZEB2-244 - 1102 4e-16 58.3 69.7 7 8 0.036 47 5.2 7.7 1 23 915 937 915 938 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZEB2-244 - 1102 4e-16 58.3 69.7 8 8 0.00016 0.2 12.6 2.3 1 21 943 963 943 965 0.92 C2H2-type zinc finger zf-Di19 PF05605.12 54 ZEB2-244 - 1102 1.6e-08 34.7 1.9 1 4 1.3e-11 1.6e-08 34.7 1.9 3 51 99 150 97 158 0.79 Drought induced 19 protein (Di19), zinc-binding zf-Di19 PF05605.12 54 ZEB2-244 - 1102 1.6e-08 34.7 1.9 2 4 0.046 59 4.1 5.2 2 50 169 218 168 222 0.74 Drought induced 19 protein (Di19), zinc-binding zf-Di19 PF05605.12 54 ZEB2-244 - 1102 1.6e-08 34.7 1.9 3 4 6.1 7.9e+03 -2.7 1.2 3 12 469 478 467 480 0.85 Drought induced 19 protein (Di19), zinc-binding zf-Di19 PF05605.12 54 ZEB2-244 - 1102 1.6e-08 34.7 1.9 4 4 0.0057 7.3 7.0 5.0 3 51 887 936 885 939 0.74 Drought induced 19 protein (Di19), zinc-binding zf-C2H2_jaz PF12171.8 27 ZEB2-244 - 1102 3.2e-08 33.7 56.3 1 9 0.00014 0.17 12.2 0.0 3 22 100 119 99 119 0.95 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZEB2-244 - 1102 3.2e-08 33.7 56.3 2 9 0.002 2.5 8.5 0.2 2 25 129 152 128 152 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZEB2-244 - 1102 3.2e-08 33.7 56.3 3 9 0.018 23 5.4 3.3 1 22 169 190 169 190 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZEB2-244 - 1102 3.2e-08 33.7 56.3 4 9 7.2e-06 0.0092 16.3 1.9 2 25 198 221 197 221 0.96 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZEB2-244 - 1102 3.2e-08 33.7 56.3 5 9 0.32 4.1e+02 1.4 0.0 2 21 469 488 468 489 0.80 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZEB2-244 - 1102 3.2e-08 33.7 56.3 6 9 1.1 1.4e+03 -0.3 0.4 9 19 755 765 754 765 0.91 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZEB2-244 - 1102 3.2e-08 33.7 56.3 7 9 1.8e-05 0.023 15.0 1.0 2 21 887 906 886 909 0.91 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZEB2-244 - 1102 3.2e-08 33.7 56.3 8 9 0.14 1.8e+02 2.6 4.7 4 20 917 933 914 933 0.89 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZEB2-244 - 1102 3.2e-08 33.7 56.3 9 9 0.095 1.2e+02 3.1 0.3 4 22 945 963 942 963 0.90 Zinc-finger double-stranded RNA-binding zf-met PF12874.7 25 ZEB2-244 - 1102 3.1e-07 30.6 54.5 1 8 0.41 5.3e+02 1.2 0.0 2 20 100 118 99 119 0.90 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZEB2-244 - 1102 3.1e-07 30.6 54.5 2 8 9.4e-05 0.12 12.8 0.4 1 24 129 152 129 152 0.91 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZEB2-244 - 1102 3.1e-07 30.6 54.5 3 8 0.046 58 4.3 1.8 1 21 170 190 170 192 0.93 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZEB2-244 - 1102 3.1e-07 30.6 54.5 4 8 3e-05 0.038 14.4 3.1 1 24 198 221 198 221 0.95 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZEB2-244 - 1102 3.1e-07 30.6 54.5 5 8 0.21 2.7e+02 2.2 0.0 1 20 469 488 469 489 0.90 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZEB2-244 - 1102 3.1e-07 30.6 54.5 6 8 0.00015 0.19 12.2 0.4 1 19 887 905 887 907 0.92 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZEB2-244 - 1102 3.1e-07 30.6 54.5 7 8 0.18 2.3e+02 2.4 6.9 2 22 916 934 915 937 0.88 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZEB2-244 - 1102 3.1e-07 30.6 54.5 8 8 0.0019 2.4 8.7 2.4 1 21 943 963 943 965 0.91 Zinc-finger of C2H2 type # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZEB2-244.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZEB2-244.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZEB2-244.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZEB2-244.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZEB2-244.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:58:32 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZEB2-245 - 1102 7.7e-32 108.3 60.7 1 8 0.022 29 5.3 0.1 15 26 99 110 91 110 0.85 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZEB2-245 - 1102 7.7e-32 108.3 60.7 2 8 5.3e-06 0.0068 16.8 1.6 1 25 113 139 113 140 0.77 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZEB2-245 - 1102 7.7e-32 108.3 60.7 3 8 5.5e-06 0.007 16.7 0.5 2 26 144 181 143 181 0.80 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZEB2-245 - 1102 7.7e-32 108.3 60.7 4 8 9e-11 1.1e-07 31.9 5.1 1 26 184 209 184 209 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZEB2-245 - 1102 7.7e-32 108.3 60.7 5 8 0.012 15 6.2 0.3 8 24 462 478 459 478 0.86 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZEB2-245 - 1102 7.7e-32 108.3 60.7 6 8 0.0037 4.7 7.8 0.3 14 24 886 896 876 898 0.77 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZEB2-245 - 1102 7.7e-32 108.3 60.7 7 8 2.5e-09 3.2e-06 27.3 5.4 2 26 902 926 901 926 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZEB2-245 - 1102 7.7e-32 108.3 60.7 8 8 6.3e-10 8.1e-07 29.2 2.7 1 26 929 954 929 954 0.93 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZEB2-245 - 1102 3e-25 87.2 72.9 1 8 1.2e-06 0.0016 18.8 1.0 2 23 100 122 99 122 0.95 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZEB2-245 - 1102 3e-25 87.2 72.9 2 8 7.3e-07 0.00094 19.5 1.2 1 23 129 151 129 151 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZEB2-245 - 1102 3e-25 87.2 72.9 3 8 8.3e-08 0.00011 22.5 5.0 1 23 170 192 170 192 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZEB2-245 - 1102 3e-25 87.2 72.9 4 8 9.2e-06 0.012 16.1 1.5 1 21 198 218 198 219 0.95 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZEB2-245 - 1102 3e-25 87.2 72.9 5 8 0.021 27 5.5 0.5 1 21 469 489 469 490 0.90 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZEB2-245 - 1102 3e-25 87.2 72.9 6 8 2.4e-05 0.031 14.7 1.3 1 23 887 909 887 909 0.94 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZEB2-245 - 1102 3e-25 87.2 72.9 7 8 9.6e-05 0.12 12.9 8.7 1 23 915 937 915 937 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZEB2-245 - 1102 3e-25 87.2 72.9 8 8 6.7e-06 0.0086 16.5 3.2 1 21 943 963 943 964 0.96 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZEB2-245 - 1102 4e-16 58.3 69.7 1 8 3.9e-05 0.05 14.4 0.6 2 24 100 122 99 122 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZEB2-245 - 1102 4e-16 58.3 69.7 2 8 4.5e-06 0.0057 17.4 1.2 1 23 129 151 129 152 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZEB2-245 - 1102 4e-16 58.3 69.7 3 8 2.3e-05 0.029 15.2 4.4 1 23 170 192 170 193 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZEB2-245 - 1102 4e-16 58.3 69.7 4 8 0.001 1.3 10.0 1.6 1 22 198 219 198 221 0.90 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZEB2-245 - 1102 4e-16 58.3 69.7 5 8 0.0056 7.1 7.8 0.6 1 21 469 489 469 490 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZEB2-245 - 1102 4e-16 58.3 69.7 6 8 5.6e-05 0.072 14.0 1.0 1 23 887 909 887 910 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZEB2-245 - 1102 4e-16 58.3 69.7 7 8 0.036 47 5.2 7.7 1 23 915 937 915 938 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZEB2-245 - 1102 4e-16 58.3 69.7 8 8 0.00016 0.2 12.6 2.3 1 21 943 963 943 965 0.92 C2H2-type zinc finger zf-Di19 PF05605.12 54 ZEB2-245 - 1102 1.6e-08 34.7 1.9 1 4 1.3e-11 1.6e-08 34.7 1.9 3 51 99 150 97 158 0.79 Drought induced 19 protein (Di19), zinc-binding zf-Di19 PF05605.12 54 ZEB2-245 - 1102 1.6e-08 34.7 1.9 2 4 0.046 59 4.1 5.2 2 50 169 218 168 222 0.74 Drought induced 19 protein (Di19), zinc-binding zf-Di19 PF05605.12 54 ZEB2-245 - 1102 1.6e-08 34.7 1.9 3 4 6.1 7.9e+03 -2.7 1.2 3 12 469 478 467 480 0.85 Drought induced 19 protein (Di19), zinc-binding zf-Di19 PF05605.12 54 ZEB2-245 - 1102 1.6e-08 34.7 1.9 4 4 0.0057 7.3 7.0 5.0 3 51 887 936 885 939 0.74 Drought induced 19 protein (Di19), zinc-binding zf-C2H2_jaz PF12171.8 27 ZEB2-245 - 1102 3.2e-08 33.7 56.3 1 9 0.00014 0.17 12.2 0.0 3 22 100 119 99 119 0.95 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZEB2-245 - 1102 3.2e-08 33.7 56.3 2 9 0.002 2.5 8.5 0.2 2 25 129 152 128 152 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZEB2-245 - 1102 3.2e-08 33.7 56.3 3 9 0.018 23 5.4 3.3 1 22 169 190 169 190 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZEB2-245 - 1102 3.2e-08 33.7 56.3 4 9 7.2e-06 0.0092 16.3 1.9 2 25 198 221 197 221 0.96 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZEB2-245 - 1102 3.2e-08 33.7 56.3 5 9 0.32 4.1e+02 1.4 0.0 2 21 469 488 468 489 0.80 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZEB2-245 - 1102 3.2e-08 33.7 56.3 6 9 1.1 1.4e+03 -0.3 0.4 9 19 755 765 754 765 0.91 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZEB2-245 - 1102 3.2e-08 33.7 56.3 7 9 1.8e-05 0.023 15.0 1.0 2 21 887 906 886 909 0.91 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZEB2-245 - 1102 3.2e-08 33.7 56.3 8 9 0.14 1.8e+02 2.6 4.7 4 20 917 933 914 933 0.89 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZEB2-245 - 1102 3.2e-08 33.7 56.3 9 9 0.095 1.2e+02 3.1 0.3 4 22 945 963 942 963 0.90 Zinc-finger double-stranded RNA-binding zf-met PF12874.7 25 ZEB2-245 - 1102 3.1e-07 30.6 54.5 1 8 0.41 5.3e+02 1.2 0.0 2 20 100 118 99 119 0.90 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZEB2-245 - 1102 3.1e-07 30.6 54.5 2 8 9.4e-05 0.12 12.8 0.4 1 24 129 152 129 152 0.91 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZEB2-245 - 1102 3.1e-07 30.6 54.5 3 8 0.046 58 4.3 1.8 1 21 170 190 170 192 0.93 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZEB2-245 - 1102 3.1e-07 30.6 54.5 4 8 3e-05 0.038 14.4 3.1 1 24 198 221 198 221 0.95 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZEB2-245 - 1102 3.1e-07 30.6 54.5 5 8 0.21 2.7e+02 2.2 0.0 1 20 469 488 469 489 0.90 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZEB2-245 - 1102 3.1e-07 30.6 54.5 6 8 0.00015 0.19 12.2 0.4 1 19 887 905 887 907 0.92 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZEB2-245 - 1102 3.1e-07 30.6 54.5 7 8 0.18 2.3e+02 2.4 6.9 2 22 916 934 915 937 0.88 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZEB2-245 - 1102 3.1e-07 30.6 54.5 8 8 0.0019 2.4 8.7 2.4 1 21 943 963 943 965 0.91 Zinc-finger of C2H2 type # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZEB2-245.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZEB2-245.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZEB2-245.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZEB2-245.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZEB2-245.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:58:32 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZEB2-246 - 955 1.2e-26 91.9 45.5 1 6 0.00036 0.44 11.1 0.2 11 26 19 34 8 34 0.86 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZEB2-246 - 955 1.2e-26 91.9 45.5 2 6 8.2e-11 9.8e-08 32.1 5.1 1 26 37 62 37 62 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZEB2-246 - 955 1.2e-26 91.9 45.5 3 6 0.011 13 6.4 0.3 8 24 315 331 312 331 0.86 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZEB2-246 - 955 1.2e-26 91.9 45.5 4 6 0.0034 4 8.0 0.3 14 24 739 749 729 751 0.77 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZEB2-246 - 955 1.2e-26 91.9 45.5 5 6 2.3e-09 2.7e-06 27.5 5.4 2 26 755 779 754 779 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZEB2-246 - 955 1.2e-26 91.9 45.5 6 6 5.8e-10 6.9e-07 29.4 2.7 1 26 782 807 782 807 0.93 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZEB2-246 - 955 4.4e-17 61.5 56.7 1 6 7.6e-08 9.1e-05 22.7 5.0 1 23 23 45 23 45 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZEB2-246 - 955 4.4e-17 61.5 56.7 2 6 8.4e-06 0.01 16.3 1.5 1 21 51 71 51 72 0.95 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZEB2-246 - 955 4.4e-17 61.5 56.7 3 6 0.019 23 5.7 0.5 1 21 322 342 322 343 0.91 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZEB2-246 - 955 4.4e-17 61.5 56.7 4 6 2.2e-05 0.026 15.0 1.3 1 23 740 762 740 762 0.94 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZEB2-246 - 955 4.4e-17 61.5 56.7 5 6 8.7e-05 0.1 13.1 8.7 1 23 768 790 768 790 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZEB2-246 - 955 4.4e-17 61.5 56.7 6 6 6.2e-06 0.0074 16.7 3.2 1 21 796 816 796 817 0.96 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZEB2-246 - 955 8.9e-10 38.6 54.3 1 6 2.1e-05 0.025 15.4 4.4 1 23 23 45 23 46 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZEB2-246 - 955 8.9e-10 38.6 54.3 2 6 0.00093 1.1 10.3 1.6 1 22 51 72 51 74 0.90 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZEB2-246 - 955 8.9e-10 38.6 54.3 3 6 0.0051 6.1 8.0 0.6 1 21 322 342 322 343 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZEB2-246 - 955 8.9e-10 38.6 54.3 4 6 5.1e-05 0.061 14.2 1.0 1 23 740 762 740 763 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZEB2-246 - 955 8.9e-10 38.6 54.3 5 6 0.033 40 5.4 7.7 1 23 768 790 768 791 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZEB2-246 - 955 8.9e-10 38.6 54.3 6 6 0.00014 0.17 12.8 2.3 1 21 796 816 796 818 0.92 C2H2-type zinc finger # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZEB2-246.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZEB2-246.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZEB2-246.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZEB2-246.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZEB2-246.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:58:32 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZEB2-247.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZEB2-247.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZEB2-247.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZEB2-247.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZEB2-247.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:58:33 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZEB2-248 - 203 1.2e-12 47.7 9.3 1 2 1.2e-06 0.0016 18.8 0.5 10 26 11 27 6 27 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZEB2-248 - 203 1.2e-12 47.7 9.3 2 2 7.2e-11 1e-07 32.1 2.7 1 26 30 55 30 55 0.93 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZEB2-248 - 203 6.3e-07 29.5 19.7 1 2 1.1e-05 0.015 15.7 8.7 1 23 16 38 16 38 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZEB2-248 - 203 6.3e-07 29.5 19.7 2 2 8e-07 0.0011 19.3 3.2 1 21 44 64 44 65 0.96 Zinc finger, C2H2 type # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZEB2-248.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZEB2-248.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZEB2-248.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZEB2-248.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZEB2-248.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:58:33 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFHX2-201.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFHX2-201.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFHX2-201.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFHX2-201.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFHX2-201.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:58:34 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- Homeodomain PF00046.29 57 ZFHX2-202 - 2572 3.8e-49 164.3 12.2 1 3 9.7e-19 1.6e-15 56.7 0.5 3 57 1598 1652 1596 1652 0.97 Homeodomain Homeodomain PF00046.29 57 ZFHX2-202 - 2572 3.8e-49 164.3 12.2 2 3 1.2e-18 1.9e-15 56.4 1.1 1 57 1858 1914 1858 1914 0.98 Homeodomain Homeodomain PF00046.29 57 ZFHX2-202 - 2572 3.8e-49 164.3 12.2 3 3 5.3e-19 8.6e-16 57.5 0.2 1 57 2066 2122 2066 2122 0.99 Homeodomain Homeobox_KN PF05920.11 40 ZFHX2-202 - 2572 1.4e-08 34.5 0.0 1 3 0.00011 0.18 11.8 0.0 9 39 1618 1648 1615 1649 0.95 Homeobox KN domain Homeobox_KN PF05920.11 40 ZFHX2-202 - 2572 1.4e-08 34.5 0.0 2 3 0.00026 0.42 10.5 0.0 11 40 1882 1911 1877 1911 0.94 Homeobox KN domain Homeobox_KN PF05920.11 40 ZFHX2-202 - 2572 1.4e-08 34.5 0.0 3 3 0.0026 4.3 7.3 0.0 11 39 2090 2118 2087 2119 0.92 Homeobox KN domain # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFHX2-202.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFHX2-202.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFHX2-202.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFHX2-202.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFHX2-202.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:58:34 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFHX2-203.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFHX2-203.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFHX2-203.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFHX2-203.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFHX2-203.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:58:34 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFHX2-204.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFHX2-204.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFHX2-204.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFHX2-204.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFHX2-204.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:58:35 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFHX2-205.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFHX2-205.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFHX2-205.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFHX2-205.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFHX2-205.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:58:35 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZFP1-201 - 374 1.6e-67 221.1 51.6 1 9 0.023 11 6.7 0.5 14 25 150 161 134 161 0.76 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZFP1-201 - 374 1.6e-67 221.1 51.6 2 9 1.2e-10 5.4e-08 32.9 2.6 3 26 167 190 166 190 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZFP1-201 - 374 1.6e-67 221.1 51.6 3 9 2.4e-13 1.1e-10 41.4 1.0 1 26 193 218 193 218 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZFP1-201 - 374 1.6e-67 221.1 51.6 4 9 1.6e-08 7.3e-06 26.2 0.2 1 25 221 245 221 246 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZFP1-201 - 374 1.6e-67 221.1 51.6 5 9 1.9e-10 8.8e-08 32.2 1.0 2 24 250 272 249 274 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZFP1-201 - 374 1.6e-67 221.1 51.6 6 9 3.9e-10 1.8e-07 31.3 0.1 2 24 278 300 277 302 0.90 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZFP1-201 - 374 1.6e-67 221.1 51.6 7 9 6e-12 2.8e-09 37.0 0.5 5 25 309 329 306 330 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZFP1-201 - 374 1.6e-67 221.1 51.6 8 9 1.8e-12 8.3e-10 38.7 0.3 2 25 334 357 333 358 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZFP1-201 - 374 1.6e-67 221.1 51.6 9 9 0.014 6.6 7.3 0.1 2 14 362 374 361 374 0.93 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZFP1-201 - 374 7.5e-54 177.3 53.9 1 8 9.3e-08 4.3e-05 23.7 1.1 1 23 151 173 151 173 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZFP1-201 - 374 7.5e-54 177.3 53.9 2 8 1.1e-08 4.9e-06 26.7 2.3 1 23 179 201 179 201 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZFP1-201 - 374 7.5e-54 177.3 53.9 3 8 6.1e-10 2.8e-07 30.6 0.3 1 23 207 229 207 229 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZFP1-201 - 374 7.5e-54 177.3 53.9 4 8 1.4e-08 6.6e-06 26.3 0.6 1 23 235 257 235 257 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZFP1-201 - 374 7.5e-54 177.3 53.9 5 8 8.9e-07 0.00041 20.6 0.6 1 23 263 285 263 285 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZFP1-201 - 374 7.5e-54 177.3 53.9 6 8 5.8e-10 2.7e-07 30.7 0.3 1 23 291 313 291 313 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZFP1-201 - 374 7.5e-54 177.3 53.9 7 8 6.2e-09 2.9e-06 27.4 1.0 1 23 319 341 319 341 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZFP1-201 - 374 7.5e-54 177.3 53.9 8 8 1.1e-08 5.1e-06 26.7 0.6 1 23 347 369 347 369 0.98 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZFP1-201 - 374 3.2e-31 105.3 49.0 1 8 4.4e-05 0.02 15.7 0.9 1 23 151 173 151 174 0.89 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZFP1-201 - 374 3.2e-31 105.3 49.0 2 8 5.1e-05 0.024 15.5 1.7 1 23 179 201 179 202 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZFP1-201 - 374 3.2e-31 105.3 49.0 3 8 1e-05 0.0047 17.7 0.5 1 23 207 229 207 230 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZFP1-201 - 374 3.2e-31 105.3 49.0 4 8 8.7e-06 0.004 17.9 0.6 1 23 235 257 235 258 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZFP1-201 - 374 3.2e-31 105.3 49.0 5 8 0.00054 0.25 12.3 0.5 1 23 263 285 263 286 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZFP1-201 - 374 3.2e-31 105.3 49.0 6 8 1.7e-06 0.00077 20.1 0.2 1 23 291 313 291 314 0.97 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZFP1-201 - 374 3.2e-31 105.3 49.0 7 8 2.6e-06 0.0012 19.5 0.7 1 23 319 341 319 342 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZFP1-201 - 374 3.2e-31 105.3 49.0 8 8 3.6e-06 0.0017 19.1 0.6 1 23 347 369 347 370 0.95 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZFP1-201 - 374 2.3e-19 68.9 54.5 1 8 0.0077 3.5 7.7 2.2 2 12 151 161 151 175 0.73 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZFP1-201 - 374 2.3e-19 68.9 54.5 2 8 4.5e-05 0.021 14.8 1.3 2 24 179 201 179 204 0.89 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZFP1-201 - 374 2.3e-19 68.9 54.5 3 8 1.9e-06 0.00087 19.2 0.5 2 26 207 231 207 232 0.96 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZFP1-201 - 374 2.3e-19 68.9 54.5 4 8 0.00013 0.06 13.4 0.8 2 20 235 253 235 259 0.79 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZFP1-201 - 374 2.3e-19 68.9 54.5 5 8 0.0072 3.3 7.8 0.7 2 11 263 272 263 286 0.79 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZFP1-201 - 374 2.3e-19 68.9 54.5 6 8 6.7e-05 0.031 14.3 1.8 1 24 290 313 290 316 0.85 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZFP1-201 - 374 2.3e-19 68.9 54.5 7 8 0.00013 0.058 13.4 0.3 2 12 319 329 319 342 0.84 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZFP1-201 - 374 2.3e-19 68.9 54.5 8 8 0.00059 0.27 11.3 0.7 2 12 347 357 347 358 0.93 C2H2-type zinc finger zf-C2H2_jaz PF12171.8 27 ZFP1-201 - 374 1.6e-15 56.9 32.8 1 8 0.0034 1.6 9.2 0.4 2 17 151 166 150 171 0.75 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZFP1-201 - 374 1.6e-15 56.9 32.8 2 8 0.00058 0.26 11.6 1.3 2 22 179 199 178 199 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZFP1-201 - 374 1.6e-15 56.9 32.8 3 8 0.00096 0.44 10.9 0.0 2 22 207 227 206 227 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZFP1-201 - 374 1.6e-15 56.9 32.8 4 8 0.025 12 6.4 0.1 2 21 235 254 234 255 0.83 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZFP1-201 - 374 1.6e-15 56.9 32.8 5 8 0.0064 3 8.3 1.2 2 22 263 283 262 283 0.90 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZFP1-201 - 374 1.6e-15 56.9 32.8 6 8 0.00093 0.43 10.9 0.4 2 24 291 313 290 313 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZFP1-201 - 374 1.6e-15 56.9 32.8 7 8 0.00051 0.24 11.8 0.0 2 22 319 339 318 339 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZFP1-201 - 374 1.6e-15 56.9 32.8 8 8 0.026 12 6.3 0.0 2 21 347 366 346 367 0.88 Zinc-finger double-stranded RNA-binding zf-met PF12874.7 25 ZFP1-201 - 374 5e-10 39.4 45.7 1 8 0.015 7 7.2 0.6 1 21 151 171 151 174 0.89 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZFP1-201 - 374 5e-10 39.4 45.7 2 8 5.4e-06 0.0025 18.2 2.0 1 21 179 199 179 202 0.92 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZFP1-201 - 374 5e-10 39.4 45.7 3 8 0.0024 1.1 9.7 0.3 1 21 207 227 207 230 0.92 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZFP1-201 - 374 5e-10 39.4 45.7 4 8 0.16 72 4.0 0.4 1 21 235 255 235 258 0.83 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZFP1-201 - 374 5e-10 39.4 45.7 5 8 0.099 46 4.6 1.2 1 21 263 283 263 286 0.91 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZFP1-201 - 374 5e-10 39.4 45.7 6 8 0.0012 0.53 10.8 0.5 1 22 291 312 291 314 0.93 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZFP1-201 - 374 5e-10 39.4 45.7 7 8 0.00061 0.28 11.6 0.2 1 22 319 340 319 342 0.92 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZFP1-201 - 374 5e-10 39.4 45.7 8 8 0.41 1.9e+02 2.6 0.1 1 19 347 365 347 368 0.87 Zinc-finger of C2H2 type Zn-ribbon_8 PF09723.10 40 ZFP1-201 - 374 5e-08 32.9 39.6 1 7 3.2 1.5e+03 -0.6 0.1 6 16 151 161 150 171 0.82 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZFP1-201 - 374 5e-08 32.9 39.6 2 7 9.1e-06 0.0042 17.2 2.3 6 35 179 215 178 220 0.91 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZFP1-201 - 374 5e-08 32.9 39.6 3 7 0.0055 2.5 8.3 7.3 6 34 235 270 234 275 0.90 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZFP1-201 - 374 5e-08 32.9 39.6 4 7 0.0052 2.4 8.4 6.2 6 34 263 298 262 304 0.91 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZFP1-201 - 374 5e-08 32.9 39.6 5 7 0.017 7.7 6.7 0.8 6 15 291 300 289 312 0.88 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZFP1-201 - 374 5e-08 32.9 39.6 6 7 3e-05 0.014 15.5 4.5 6 38 319 358 318 360 0.84 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZFP1-201 - 374 5e-08 32.9 39.6 7 7 0.0069 3.2 8.0 0.5 6 18 347 359 346 369 0.80 Zinc ribbon domain # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFP1-201.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFP1-201.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFP1-201.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFP1-201.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFP1-201.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:58:36 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZFP1-202 - 407 2.1e-67 220.7 50.7 1 9 0.021 11 6.7 0.3 14 25 183 194 170 194 0.75 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZFP1-202 - 407 2.1e-67 220.7 50.7 2 9 1.2e-10 6e-08 32.8 2.6 3 26 200 223 199 223 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZFP1-202 - 407 2.1e-67 220.7 50.7 3 9 2.3e-13 1.2e-10 41.3 1.0 1 26 226 251 226 251 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZFP1-202 - 407 2.1e-67 220.7 50.7 4 9 1.6e-08 8.1e-06 26.0 0.2 1 25 254 278 254 279 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZFP1-202 - 407 2.1e-67 220.7 50.7 5 9 1.9e-10 9.8e-08 32.1 1.0 2 24 283 305 282 307 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZFP1-202 - 407 2.1e-67 220.7 50.7 6 9 3.9e-10 2e-07 31.1 0.1 2 24 311 333 310 335 0.90 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZFP1-202 - 407 2.1e-67 220.7 50.7 7 9 6e-12 3.1e-09 36.9 0.5 5 25 342 362 339 363 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZFP1-202 - 407 2.1e-67 220.7 50.7 8 9 1.8e-12 9.2e-10 38.5 0.3 2 25 367 390 366 391 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZFP1-202 - 407 2.1e-67 220.7 50.7 9 9 0.014 7.3 7.2 0.1 2 14 395 407 394 407 0.93 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZFP1-202 - 407 1.8e-53 176.1 53.9 1 8 9.3e-08 4.8e-05 23.6 1.1 1 23 184 206 184 206 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZFP1-202 - 407 1.8e-53 176.1 53.9 2 8 1.1e-08 5.5e-06 26.5 2.3 1 23 212 234 212 234 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZFP1-202 - 407 1.8e-53 176.1 53.9 3 8 6.1e-10 3.1e-07 30.5 0.3 1 23 240 262 240 262 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZFP1-202 - 407 1.8e-53 176.1 53.9 4 8 1.4e-08 7.3e-06 26.2 0.6 1 23 268 290 268 290 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZFP1-202 - 407 1.8e-53 176.1 53.9 5 8 8.9e-07 0.00046 20.5 0.6 1 23 296 318 296 318 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZFP1-202 - 407 1.8e-53 176.1 53.9 6 8 5.8e-10 2.9e-07 30.5 0.3 1 23 324 346 324 346 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZFP1-202 - 407 1.8e-53 176.1 53.9 7 8 6.2e-09 3.2e-06 27.3 1.0 1 23 352 374 352 374 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZFP1-202 - 407 1.8e-53 176.1 53.9 8 8 1.1e-08 5.6e-06 26.5 0.6 1 23 380 402 380 402 0.98 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZFP1-202 - 407 7.3e-31 104.2 49.0 1 8 4.4e-05 0.023 15.5 0.9 1 23 184 206 184 207 0.89 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZFP1-202 - 407 7.3e-31 104.2 49.0 2 8 5.1e-05 0.026 15.3 1.7 1 23 212 234 212 235 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZFP1-202 - 407 7.3e-31 104.2 49.0 3 8 1e-05 0.0052 17.5 0.5 1 23 240 262 240 263 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZFP1-202 - 407 7.3e-31 104.2 49.0 4 8 8.7e-06 0.0045 17.7 0.6 1 23 268 290 268 291 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZFP1-202 - 407 7.3e-31 104.2 49.0 5 8 0.00054 0.28 12.1 0.5 1 23 296 318 296 319 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZFP1-202 - 407 7.3e-31 104.2 49.0 6 8 1.7e-06 0.00085 20.0 0.2 1 23 324 346 324 347 0.97 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZFP1-202 - 407 7.3e-31 104.2 49.0 7 8 2.6e-06 0.0013 19.4 0.7 1 23 352 374 352 375 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZFP1-202 - 407 7.3e-31 104.2 49.0 8 8 3.6e-06 0.0018 18.9 0.6 1 23 380 402 380 403 0.95 C2H2-type zinc finger KRAB PF01352.27 42 ZFP1-202 - 407 3.3e-24 84.3 0.9 1 1 1.1e-26 5.6e-24 83.5 0.9 1 42 7 48 7 48 0.99 KRAB box zf-C2H2_6 PF13912.6 27 ZFP1-202 - 407 3.9e-19 68.2 54.1 1 8 0.0073 3.7 7.6 2.2 2 12 184 194 184 208 0.74 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZFP1-202 - 407 3.9e-19 68.2 54.1 2 8 4.5e-05 0.023 14.7 1.3 2 24 212 234 212 237 0.89 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZFP1-202 - 407 3.9e-19 68.2 54.1 3 8 1.9e-06 0.00096 19.1 0.5 2 26 240 264 240 265 0.96 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZFP1-202 - 407 3.9e-19 68.2 54.1 4 8 0.00013 0.067 13.2 0.8 2 20 268 286 268 292 0.79 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZFP1-202 - 407 3.9e-19 68.2 54.1 5 8 0.0071 3.6 7.7 0.7 2 11 296 305 296 319 0.79 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZFP1-202 - 407 3.9e-19 68.2 54.1 6 8 5.5e-05 0.028 14.4 1.6 1 24 323 346 323 349 0.85 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZFP1-202 - 407 3.9e-19 68.2 54.1 7 8 0.00012 0.064 13.3 0.3 2 12 352 362 352 375 0.84 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZFP1-202 - 407 3.9e-19 68.2 54.1 8 8 0.00058 0.3 11.2 0.7 2 12 380 390 380 391 0.93 C2H2-type zinc finger zf-C2H2_jaz PF12171.8 27 ZFP1-202 - 407 3.5e-15 55.8 32.8 1 8 0.0033 1.7 9.0 0.4 2 17 184 199 183 204 0.75 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZFP1-202 - 407 3.5e-15 55.8 32.8 2 8 0.00057 0.29 11.5 1.3 2 22 212 232 211 232 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZFP1-202 - 407 3.5e-15 55.8 32.8 3 8 0.00096 0.49 10.7 0.0 2 22 240 260 239 260 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZFP1-202 - 407 3.5e-15 55.8 32.8 4 8 0.025 13 6.2 0.1 2 21 268 287 267 288 0.83 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZFP1-202 - 407 3.5e-15 55.8 32.8 5 8 0.0064 3.3 8.1 1.2 2 22 296 316 295 316 0.90 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZFP1-202 - 407 3.5e-15 55.8 32.8 6 8 0.00093 0.48 10.8 0.4 2 24 324 346 323 346 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZFP1-202 - 407 3.5e-15 55.8 32.8 7 8 0.00051 0.26 11.6 0.0 2 22 352 372 351 372 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZFP1-202 - 407 3.5e-15 55.8 32.8 8 8 0.026 13 6.2 0.0 2 21 380 399 379 400 0.88 Zinc-finger double-stranded RNA-binding zf-met PF12874.7 25 ZFP1-202 - 407 1.1e-09 38.4 45.7 1 8 0.015 7.8 7.0 0.6 1 21 184 204 184 207 0.89 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZFP1-202 - 407 1.1e-09 38.4 45.7 2 8 5.4e-06 0.0027 18.0 2.0 1 21 212 232 212 235 0.92 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZFP1-202 - 407 1.1e-09 38.4 45.7 3 8 0.0024 1.2 9.6 0.3 1 21 240 260 240 263 0.92 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZFP1-202 - 407 1.1e-09 38.4 45.7 4 8 0.16 80 3.8 0.4 1 21 268 288 268 291 0.83 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZFP1-202 - 407 1.1e-09 38.4 45.7 5 8 0.099 51 4.5 1.2 1 21 296 316 296 319 0.91 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZFP1-202 - 407 1.1e-09 38.4 45.7 6 8 0.0011 0.59 10.6 0.5 1 22 324 345 324 347 0.93 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZFP1-202 - 407 1.1e-09 38.4 45.7 7 8 0.00061 0.31 11.5 0.2 1 22 352 373 352 375 0.92 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZFP1-202 - 407 1.1e-09 38.4 45.7 8 8 0.41 2.1e+02 2.5 0.1 1 19 380 398 380 401 0.87 Zinc-finger of C2H2 type Zn-ribbon_8 PF09723.10 40 ZFP1-202 - 407 1e-07 31.9 39.9 1 7 3.2 1.6e+03 -0.7 0.1 6 16 184 194 183 204 0.82 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZFP1-202 - 407 1e-07 31.9 39.9 2 7 9.2e-06 0.0047 17.0 2.3 6 35 212 248 211 253 0.91 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZFP1-202 - 407 1e-07 31.9 39.9 3 7 0.0055 2.8 8.1 7.3 6 34 268 303 267 308 0.90 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZFP1-202 - 407 1e-07 31.9 39.9 4 7 0.006 3.1 8.0 6.4 6 34 296 331 295 335 0.91 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZFP1-202 - 407 1e-07 31.9 39.9 5 7 0.018 9 6.5 0.8 6 15 324 333 322 343 0.89 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZFP1-202 - 407 1e-07 31.9 39.9 6 7 3.5e-05 0.018 15.1 4.7 6 38 352 391 351 393 0.84 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZFP1-202 - 407 1e-07 31.9 39.9 7 7 0.0069 3.5 7.8 0.5 6 18 380 392 379 402 0.80 Zinc ribbon domain # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFP1-202.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFP1-202.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFP1-202.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFP1-202.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFP1-202.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:58:36 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZFP1-203 - 352 7.9e-68 222.1 51.6 1 9 0.022 10 6.8 0.5 14 25 128 139 112 139 0.76 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZFP1-203 - 352 7.9e-68 222.1 51.6 2 9 1.1e-10 5e-08 33.0 2.6 3 26 145 168 144 168 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZFP1-203 - 352 7.9e-68 222.1 51.6 3 9 2.2e-13 1e-10 41.6 1.0 1 26 171 196 171 196 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZFP1-203 - 352 7.9e-68 222.1 51.6 4 9 1.5e-08 6.7e-06 26.3 0.2 1 25 199 223 199 224 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZFP1-203 - 352 7.9e-68 222.1 51.6 5 9 1.8e-10 8.2e-08 32.3 1.0 2 24 228 250 227 252 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZFP1-203 - 352 7.9e-68 222.1 51.6 6 9 3.6e-10 1.7e-07 31.4 0.1 2 24 256 278 255 280 0.90 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZFP1-203 - 352 7.9e-68 222.1 51.6 7 9 5.6e-12 2.6e-09 37.1 0.5 5 25 287 307 284 308 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZFP1-203 - 352 7.9e-68 222.1 51.6 8 9 1.7e-12 7.6e-10 38.8 0.3 2 25 312 335 311 336 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZFP1-203 - 352 7.9e-68 222.1 51.6 9 9 0.013 6.2 7.4 0.1 2 14 340 352 339 352 0.93 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZFP1-203 - 352 4e-54 178.1 53.9 1 8 8.7e-08 4e-05 23.8 1.1 1 23 129 151 129 151 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZFP1-203 - 352 4e-54 178.1 53.9 2 8 1e-08 4.6e-06 26.8 2.3 1 23 157 179 157 179 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZFP1-203 - 352 4e-54 178.1 53.9 3 8 5.6e-10 2.6e-07 30.7 0.3 1 23 185 207 185 207 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZFP1-203 - 352 4e-54 178.1 53.9 4 8 1.3e-08 6.1e-06 26.4 0.6 1 23 213 235 213 235 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZFP1-203 - 352 4e-54 178.1 53.9 5 8 8.3e-07 0.00038 20.7 0.6 1 23 241 263 241 263 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZFP1-203 - 352 4e-54 178.1 53.9 6 8 5.4e-10 2.5e-07 30.8 0.3 1 23 269 291 269 291 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZFP1-203 - 352 4e-54 178.1 53.9 7 8 5.8e-09 2.6e-06 27.5 1.0 1 23 297 319 297 319 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZFP1-203 - 352 4e-54 178.1 53.9 8 8 1e-08 4.7e-06 26.8 0.6 1 23 325 347 325 347 0.98 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZFP1-203 - 352 1.8e-31 106.1 49.0 1 8 4.1e-05 0.019 15.8 0.9 1 23 129 151 129 152 0.89 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZFP1-203 - 352 1.8e-31 106.1 49.0 2 8 4.8e-05 0.022 15.6 1.7 1 23 157 179 157 180 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZFP1-203 - 352 1.8e-31 106.1 49.0 3 8 9.5e-06 0.0044 17.8 0.5 1 23 185 207 185 208 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZFP1-203 - 352 1.8e-31 106.1 49.0 4 8 8.1e-06 0.0037 18.0 0.6 1 23 213 235 213 236 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZFP1-203 - 352 1.8e-31 106.1 49.0 5 8 0.0005 0.23 12.4 0.5 1 23 241 263 241 264 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZFP1-203 - 352 1.8e-31 106.1 49.0 6 8 1.5e-06 0.00071 20.2 0.2 1 23 269 291 269 292 0.97 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZFP1-203 - 352 1.8e-31 106.1 49.0 7 8 2.4e-06 0.0011 19.6 0.7 1 23 297 319 297 320 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZFP1-203 - 352 1.8e-31 106.1 49.0 8 8 3.3e-06 0.0015 19.2 0.6 1 23 325 347 325 348 0.95 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZFP1-203 - 352 1.3e-19 69.7 54.6 1 8 0.0071 3.3 7.8 2.2 2 12 129 139 129 153 0.73 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZFP1-203 - 352 1.3e-19 69.7 54.6 2 8 4.2e-05 0.019 14.9 1.3 2 24 157 179 157 182 0.89 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZFP1-203 - 352 1.3e-19 69.7 54.6 3 8 1.7e-06 0.0008 19.3 0.5 2 26 185 209 185 210 0.96 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZFP1-203 - 352 1.3e-19 69.7 54.6 4 8 0.00012 0.056 13.5 0.8 2 20 213 231 213 237 0.79 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZFP1-203 - 352 1.3e-19 69.7 54.6 5 8 0.0067 3.1 7.9 0.7 2 11 241 250 241 264 0.79 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZFP1-203 - 352 1.3e-19 69.7 54.6 6 8 6.4e-05 0.029 14.3 1.9 1 24 268 291 268 294 0.85 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZFP1-203 - 352 1.3e-19 69.7 54.6 7 8 0.00012 0.054 13.5 0.3 2 12 297 307 297 320 0.84 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZFP1-203 - 352 1.3e-19 69.7 54.6 8 8 0.00055 0.25 11.4 0.7 2 12 325 335 325 336 0.93 C2H2-type zinc finger zf-C2H2_jaz PF12171.8 27 ZFP1-203 - 352 8.7e-16 57.8 32.8 1 8 0.0031 1.4 9.3 0.4 2 17 129 144 128 149 0.75 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZFP1-203 - 352 8.7e-16 57.8 32.8 2 8 0.00053 0.25 11.7 1.3 2 22 157 177 156 177 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZFP1-203 - 352 8.7e-16 57.8 32.8 3 8 0.00089 0.41 11.0 0.0 2 22 185 205 184 205 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZFP1-203 - 352 8.7e-16 57.8 32.8 4 8 0.024 11 6.5 0.1 2 21 213 232 212 233 0.83 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZFP1-203 - 352 8.7e-16 57.8 32.8 5 8 0.006 2.7 8.4 1.2 2 22 241 261 240 261 0.90 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZFP1-203 - 352 8.7e-16 57.8 32.8 6 8 0.00087 0.4 11.0 0.4 2 24 269 291 268 291 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZFP1-203 - 352 8.7e-16 57.8 32.8 7 8 0.00048 0.22 11.9 0.0 2 22 297 317 296 317 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZFP1-203 - 352 8.7e-16 57.8 32.8 8 8 0.025 11 6.4 0.0 2 21 325 344 324 345 0.88 Zinc-finger double-stranded RNA-binding zf-met PF12874.7 25 ZFP1-203 - 352 2.8e-10 40.2 45.8 1 8 0.014 6.5 7.3 0.6 1 21 129 149 129 152 0.89 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZFP1-203 - 352 2.8e-10 40.2 45.8 2 8 5e-06 0.0023 18.3 2.0 1 21 157 177 157 180 0.92 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZFP1-203 - 352 2.8e-10 40.2 45.8 3 8 0.0022 1 9.8 0.3 1 21 185 205 185 208 0.92 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZFP1-203 - 352 2.8e-10 40.2 45.8 4 8 0.15 67 4.1 0.4 1 21 213 233 213 236 0.83 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZFP1-203 - 352 2.8e-10 40.2 45.8 5 8 0.092 42 4.7 1.2 1 21 241 261 241 264 0.91 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZFP1-203 - 352 2.8e-10 40.2 45.8 6 8 0.0011 0.49 10.9 0.5 1 22 269 290 269 292 0.93 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZFP1-203 - 352 2.8e-10 40.2 45.8 7 8 0.00057 0.26 11.7 0.2 1 22 297 318 297 320 0.92 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZFP1-203 - 352 2.8e-10 40.2 45.8 8 8 0.38 1.8e+02 2.7 0.1 1 19 325 343 325 346 0.87 Zinc-finger of C2H2 type Zn-ribbon_8 PF09723.10 40 ZFP1-203 - 352 2.7e-08 33.8 39.4 1 7 2.9 1.3e+03 -0.4 0.0 6 16 129 139 128 150 0.82 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZFP1-203 - 352 2.7e-08 33.8 39.4 2 7 8.4e-06 0.0039 17.3 2.3 6 35 157 193 156 198 0.91 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZFP1-203 - 352 2.7e-08 33.8 39.4 3 7 0.0051 2.4 8.4 7.3 6 34 213 248 212 253 0.90 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZFP1-203 - 352 2.7e-08 33.8 39.4 4 7 0.0051 2.3 8.4 6.3 6 34 241 276 240 280 0.91 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZFP1-203 - 352 2.7e-08 33.8 39.4 5 7 0.017 7.6 6.7 0.8 6 15 269 278 267 288 0.89 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZFP1-203 - 352 2.7e-08 33.8 39.4 6 7 3.4e-05 0.016 15.3 4.8 6 38 297 336 296 338 0.84 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZFP1-203 - 352 2.7e-08 33.8 39.4 7 7 0.0065 3 8.0 0.5 6 18 325 337 324 347 0.80 Zinc ribbon domain zf_UBZ PF18439.1 32 ZFP1-203 - 352 7.6e-07 28.6 31.0 1 8 0.53 2.4e+02 1.4 0.1 3 15 129 141 127 148 0.77 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZFP1-203 - 352 7.6e-07 28.6 31.0 2 8 0.41 1.9e+02 1.8 0.2 3 15 157 169 155 176 0.80 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZFP1-203 - 352 7.6e-07 28.6 31.0 3 8 0.012 5.4 6.7 0.1 3 13 185 195 183 204 0.83 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZFP1-203 - 352 7.6e-07 28.6 31.0 4 8 0.00022 0.1 12.2 0.3 3 21 213 232 211 232 0.93 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZFP1-203 - 352 7.6e-07 28.6 31.0 5 8 1.3 5.9e+02 0.2 0.3 3 12 241 250 240 252 0.86 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZFP1-203 - 352 7.6e-07 28.6 31.0 6 8 0.0023 1.1 9.0 0.2 2 15 268 281 267 287 0.83 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZFP1-203 - 352 7.6e-07 28.6 31.0 7 8 0.0083 3.8 7.2 0.1 3 14 297 308 295 313 0.87 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZFP1-203 - 352 7.6e-07 28.6 31.0 8 8 0.0055 2.5 7.8 0.1 3 15 325 337 323 343 0.83 Ubiquitin-Binding Zinc Finger # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFP1-203.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFP1-203.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFP1-203.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFP1-203.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFP1-203.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:58:37 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFP1-204.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFP1-204.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFP1-204.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFP1-204.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFP1-204.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:58:37 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- KRAB PF01352.27 42 ZFP1-207 - 91 2.6e-25 87.8 0.9 1 1 2.2e-29 4e-25 87.2 0.9 1 42 22 63 22 63 0.99 KRAB box # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFP1-207.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFP1-207.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFP1-207.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFP1-207.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFP1-207.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:58:37 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZFP1-208 - 352 7.9e-68 222.1 51.6 1 9 0.022 10 6.8 0.5 14 25 128 139 112 139 0.76 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZFP1-208 - 352 7.9e-68 222.1 51.6 2 9 1.1e-10 5e-08 33.0 2.6 3 26 145 168 144 168 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZFP1-208 - 352 7.9e-68 222.1 51.6 3 9 2.2e-13 1e-10 41.6 1.0 1 26 171 196 171 196 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZFP1-208 - 352 7.9e-68 222.1 51.6 4 9 1.5e-08 6.7e-06 26.3 0.2 1 25 199 223 199 224 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZFP1-208 - 352 7.9e-68 222.1 51.6 5 9 1.8e-10 8.2e-08 32.3 1.0 2 24 228 250 227 252 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZFP1-208 - 352 7.9e-68 222.1 51.6 6 9 3.6e-10 1.7e-07 31.4 0.1 2 24 256 278 255 280 0.90 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZFP1-208 - 352 7.9e-68 222.1 51.6 7 9 5.6e-12 2.6e-09 37.1 0.5 5 25 287 307 284 308 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZFP1-208 - 352 7.9e-68 222.1 51.6 8 9 1.7e-12 7.6e-10 38.8 0.3 2 25 312 335 311 336 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZFP1-208 - 352 7.9e-68 222.1 51.6 9 9 0.013 6.2 7.4 0.1 2 14 340 352 339 352 0.93 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZFP1-208 - 352 4e-54 178.1 53.9 1 8 8.7e-08 4e-05 23.8 1.1 1 23 129 151 129 151 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZFP1-208 - 352 4e-54 178.1 53.9 2 8 1e-08 4.6e-06 26.8 2.3 1 23 157 179 157 179 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZFP1-208 - 352 4e-54 178.1 53.9 3 8 5.6e-10 2.6e-07 30.7 0.3 1 23 185 207 185 207 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZFP1-208 - 352 4e-54 178.1 53.9 4 8 1.3e-08 6.1e-06 26.4 0.6 1 23 213 235 213 235 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZFP1-208 - 352 4e-54 178.1 53.9 5 8 8.3e-07 0.00038 20.7 0.6 1 23 241 263 241 263 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZFP1-208 - 352 4e-54 178.1 53.9 6 8 5.4e-10 2.5e-07 30.8 0.3 1 23 269 291 269 291 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZFP1-208 - 352 4e-54 178.1 53.9 7 8 5.8e-09 2.6e-06 27.5 1.0 1 23 297 319 297 319 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZFP1-208 - 352 4e-54 178.1 53.9 8 8 1e-08 4.7e-06 26.8 0.6 1 23 325 347 325 347 0.98 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZFP1-208 - 352 1.8e-31 106.1 49.0 1 8 4.1e-05 0.019 15.8 0.9 1 23 129 151 129 152 0.89 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZFP1-208 - 352 1.8e-31 106.1 49.0 2 8 4.8e-05 0.022 15.6 1.7 1 23 157 179 157 180 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZFP1-208 - 352 1.8e-31 106.1 49.0 3 8 9.5e-06 0.0044 17.8 0.5 1 23 185 207 185 208 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZFP1-208 - 352 1.8e-31 106.1 49.0 4 8 8.1e-06 0.0037 18.0 0.6 1 23 213 235 213 236 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZFP1-208 - 352 1.8e-31 106.1 49.0 5 8 0.0005 0.23 12.4 0.5 1 23 241 263 241 264 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZFP1-208 - 352 1.8e-31 106.1 49.0 6 8 1.5e-06 0.00071 20.2 0.2 1 23 269 291 269 292 0.97 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZFP1-208 - 352 1.8e-31 106.1 49.0 7 8 2.4e-06 0.0011 19.6 0.7 1 23 297 319 297 320 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZFP1-208 - 352 1.8e-31 106.1 49.0 8 8 3.3e-06 0.0015 19.2 0.6 1 23 325 347 325 348 0.95 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZFP1-208 - 352 1.3e-19 69.7 54.6 1 8 0.0071 3.3 7.8 2.2 2 12 129 139 129 153 0.73 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZFP1-208 - 352 1.3e-19 69.7 54.6 2 8 4.2e-05 0.019 14.9 1.3 2 24 157 179 157 182 0.89 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZFP1-208 - 352 1.3e-19 69.7 54.6 3 8 1.7e-06 0.0008 19.3 0.5 2 26 185 209 185 210 0.96 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZFP1-208 - 352 1.3e-19 69.7 54.6 4 8 0.00012 0.056 13.5 0.8 2 20 213 231 213 237 0.79 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZFP1-208 - 352 1.3e-19 69.7 54.6 5 8 0.0067 3.1 7.9 0.7 2 11 241 250 241 264 0.79 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZFP1-208 - 352 1.3e-19 69.7 54.6 6 8 6.4e-05 0.029 14.3 1.9 1 24 268 291 268 294 0.85 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZFP1-208 - 352 1.3e-19 69.7 54.6 7 8 0.00012 0.054 13.5 0.3 2 12 297 307 297 320 0.84 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZFP1-208 - 352 1.3e-19 69.7 54.6 8 8 0.00055 0.25 11.4 0.7 2 12 325 335 325 336 0.93 C2H2-type zinc finger zf-C2H2_jaz PF12171.8 27 ZFP1-208 - 352 8.7e-16 57.8 32.8 1 8 0.0031 1.4 9.3 0.4 2 17 129 144 128 149 0.75 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZFP1-208 - 352 8.7e-16 57.8 32.8 2 8 0.00053 0.25 11.7 1.3 2 22 157 177 156 177 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZFP1-208 - 352 8.7e-16 57.8 32.8 3 8 0.00089 0.41 11.0 0.0 2 22 185 205 184 205 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZFP1-208 - 352 8.7e-16 57.8 32.8 4 8 0.024 11 6.5 0.1 2 21 213 232 212 233 0.83 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZFP1-208 - 352 8.7e-16 57.8 32.8 5 8 0.006 2.7 8.4 1.2 2 22 241 261 240 261 0.90 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZFP1-208 - 352 8.7e-16 57.8 32.8 6 8 0.00087 0.4 11.0 0.4 2 24 269 291 268 291 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZFP1-208 - 352 8.7e-16 57.8 32.8 7 8 0.00048 0.22 11.9 0.0 2 22 297 317 296 317 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZFP1-208 - 352 8.7e-16 57.8 32.8 8 8 0.025 11 6.4 0.0 2 21 325 344 324 345 0.88 Zinc-finger double-stranded RNA-binding zf-met PF12874.7 25 ZFP1-208 - 352 2.8e-10 40.2 45.8 1 8 0.014 6.5 7.3 0.6 1 21 129 149 129 152 0.89 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZFP1-208 - 352 2.8e-10 40.2 45.8 2 8 5e-06 0.0023 18.3 2.0 1 21 157 177 157 180 0.92 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZFP1-208 - 352 2.8e-10 40.2 45.8 3 8 0.0022 1 9.8 0.3 1 21 185 205 185 208 0.92 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZFP1-208 - 352 2.8e-10 40.2 45.8 4 8 0.15 67 4.1 0.4 1 21 213 233 213 236 0.83 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZFP1-208 - 352 2.8e-10 40.2 45.8 5 8 0.092 42 4.7 1.2 1 21 241 261 241 264 0.91 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZFP1-208 - 352 2.8e-10 40.2 45.8 6 8 0.0011 0.49 10.9 0.5 1 22 269 290 269 292 0.93 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZFP1-208 - 352 2.8e-10 40.2 45.8 7 8 0.00057 0.26 11.7 0.2 1 22 297 318 297 320 0.92 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZFP1-208 - 352 2.8e-10 40.2 45.8 8 8 0.38 1.8e+02 2.7 0.1 1 19 325 343 325 346 0.87 Zinc-finger of C2H2 type Zn-ribbon_8 PF09723.10 40 ZFP1-208 - 352 2.7e-08 33.8 39.4 1 7 2.9 1.3e+03 -0.4 0.0 6 16 129 139 128 150 0.82 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZFP1-208 - 352 2.7e-08 33.8 39.4 2 7 8.4e-06 0.0039 17.3 2.3 6 35 157 193 156 198 0.91 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZFP1-208 - 352 2.7e-08 33.8 39.4 3 7 0.0051 2.4 8.4 7.3 6 34 213 248 212 253 0.90 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZFP1-208 - 352 2.7e-08 33.8 39.4 4 7 0.0051 2.3 8.4 6.3 6 34 241 276 240 280 0.91 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZFP1-208 - 352 2.7e-08 33.8 39.4 5 7 0.017 7.6 6.7 0.8 6 15 269 278 267 288 0.89 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZFP1-208 - 352 2.7e-08 33.8 39.4 6 7 3.4e-05 0.016 15.3 4.8 6 38 297 336 296 338 0.84 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZFP1-208 - 352 2.7e-08 33.8 39.4 7 7 0.0065 3 8.0 0.5 6 18 325 337 324 347 0.80 Zinc ribbon domain zf_UBZ PF18439.1 32 ZFP1-208 - 352 7.6e-07 28.6 31.0 1 8 0.53 2.4e+02 1.4 0.1 3 15 129 141 127 148 0.77 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZFP1-208 - 352 7.6e-07 28.6 31.0 2 8 0.41 1.9e+02 1.8 0.2 3 15 157 169 155 176 0.80 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZFP1-208 - 352 7.6e-07 28.6 31.0 3 8 0.012 5.4 6.7 0.1 3 13 185 195 183 204 0.83 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZFP1-208 - 352 7.6e-07 28.6 31.0 4 8 0.00022 0.1 12.2 0.3 3 21 213 232 211 232 0.93 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZFP1-208 - 352 7.6e-07 28.6 31.0 5 8 1.3 5.9e+02 0.2 0.3 3 12 241 250 240 252 0.86 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZFP1-208 - 352 7.6e-07 28.6 31.0 6 8 0.0023 1.1 9.0 0.2 2 15 268 281 267 287 0.83 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZFP1-208 - 352 7.6e-07 28.6 31.0 7 8 0.0083 3.8 7.2 0.1 3 14 297 308 295 313 0.87 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZFP1-208 - 352 7.6e-07 28.6 31.0 8 8 0.0055 2.5 7.8 0.1 3 15 325 337 323 343 0.83 Ubiquitin-Binding Zinc Finger # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFP1-208.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFP1-208.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFP1-208.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFP1-208.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFP1-208.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:58:38 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZFP1-209 - 407 2.1e-67 220.7 50.7 1 9 0.021 11 6.7 0.3 14 25 183 194 170 194 0.75 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZFP1-209 - 407 2.1e-67 220.7 50.7 2 9 1.2e-10 6e-08 32.8 2.6 3 26 200 223 199 223 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZFP1-209 - 407 2.1e-67 220.7 50.7 3 9 2.3e-13 1.2e-10 41.3 1.0 1 26 226 251 226 251 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZFP1-209 - 407 2.1e-67 220.7 50.7 4 9 1.6e-08 8.1e-06 26.0 0.2 1 25 254 278 254 279 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZFP1-209 - 407 2.1e-67 220.7 50.7 5 9 1.9e-10 9.8e-08 32.1 1.0 2 24 283 305 282 307 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZFP1-209 - 407 2.1e-67 220.7 50.7 6 9 3.9e-10 2e-07 31.1 0.1 2 24 311 333 310 335 0.90 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZFP1-209 - 407 2.1e-67 220.7 50.7 7 9 6e-12 3.1e-09 36.9 0.5 5 25 342 362 339 363 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZFP1-209 - 407 2.1e-67 220.7 50.7 8 9 1.8e-12 9.2e-10 38.5 0.3 2 25 367 390 366 391 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZFP1-209 - 407 2.1e-67 220.7 50.7 9 9 0.014 7.3 7.2 0.1 2 14 395 407 394 407 0.93 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZFP1-209 - 407 1.8e-53 176.1 53.9 1 8 9.3e-08 4.8e-05 23.6 1.1 1 23 184 206 184 206 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZFP1-209 - 407 1.8e-53 176.1 53.9 2 8 1.1e-08 5.5e-06 26.5 2.3 1 23 212 234 212 234 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZFP1-209 - 407 1.8e-53 176.1 53.9 3 8 6.1e-10 3.1e-07 30.5 0.3 1 23 240 262 240 262 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZFP1-209 - 407 1.8e-53 176.1 53.9 4 8 1.4e-08 7.3e-06 26.2 0.6 1 23 268 290 268 290 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZFP1-209 - 407 1.8e-53 176.1 53.9 5 8 8.9e-07 0.00046 20.5 0.6 1 23 296 318 296 318 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZFP1-209 - 407 1.8e-53 176.1 53.9 6 8 5.8e-10 2.9e-07 30.5 0.3 1 23 324 346 324 346 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZFP1-209 - 407 1.8e-53 176.1 53.9 7 8 6.2e-09 3.2e-06 27.3 1.0 1 23 352 374 352 374 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZFP1-209 - 407 1.8e-53 176.1 53.9 8 8 1.1e-08 5.6e-06 26.5 0.6 1 23 380 402 380 402 0.98 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZFP1-209 - 407 7.3e-31 104.2 49.0 1 8 4.4e-05 0.023 15.5 0.9 1 23 184 206 184 207 0.89 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZFP1-209 - 407 7.3e-31 104.2 49.0 2 8 5.1e-05 0.026 15.3 1.7 1 23 212 234 212 235 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZFP1-209 - 407 7.3e-31 104.2 49.0 3 8 1e-05 0.0052 17.5 0.5 1 23 240 262 240 263 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZFP1-209 - 407 7.3e-31 104.2 49.0 4 8 8.7e-06 0.0045 17.7 0.6 1 23 268 290 268 291 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZFP1-209 - 407 7.3e-31 104.2 49.0 5 8 0.00054 0.28 12.1 0.5 1 23 296 318 296 319 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZFP1-209 - 407 7.3e-31 104.2 49.0 6 8 1.7e-06 0.00085 20.0 0.2 1 23 324 346 324 347 0.97 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZFP1-209 - 407 7.3e-31 104.2 49.0 7 8 2.6e-06 0.0013 19.4 0.7 1 23 352 374 352 375 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZFP1-209 - 407 7.3e-31 104.2 49.0 8 8 3.6e-06 0.0018 18.9 0.6 1 23 380 402 380 403 0.95 C2H2-type zinc finger KRAB PF01352.27 42 ZFP1-209 - 407 3.3e-24 84.3 0.9 1 1 1.1e-26 5.6e-24 83.5 0.9 1 42 7 48 7 48 0.99 KRAB box zf-C2H2_6 PF13912.6 27 ZFP1-209 - 407 3.9e-19 68.2 54.1 1 8 0.0073 3.7 7.6 2.2 2 12 184 194 184 208 0.74 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZFP1-209 - 407 3.9e-19 68.2 54.1 2 8 4.5e-05 0.023 14.7 1.3 2 24 212 234 212 237 0.89 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZFP1-209 - 407 3.9e-19 68.2 54.1 3 8 1.9e-06 0.00096 19.1 0.5 2 26 240 264 240 265 0.96 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZFP1-209 - 407 3.9e-19 68.2 54.1 4 8 0.00013 0.067 13.2 0.8 2 20 268 286 268 292 0.79 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZFP1-209 - 407 3.9e-19 68.2 54.1 5 8 0.0071 3.6 7.7 0.7 2 11 296 305 296 319 0.79 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZFP1-209 - 407 3.9e-19 68.2 54.1 6 8 5.5e-05 0.028 14.4 1.6 1 24 323 346 323 349 0.85 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZFP1-209 - 407 3.9e-19 68.2 54.1 7 8 0.00012 0.064 13.3 0.3 2 12 352 362 352 375 0.84 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZFP1-209 - 407 3.9e-19 68.2 54.1 8 8 0.00058 0.3 11.2 0.7 2 12 380 390 380 391 0.93 C2H2-type zinc finger zf-C2H2_jaz PF12171.8 27 ZFP1-209 - 407 3.5e-15 55.8 32.8 1 8 0.0033 1.7 9.0 0.4 2 17 184 199 183 204 0.75 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZFP1-209 - 407 3.5e-15 55.8 32.8 2 8 0.00057 0.29 11.5 1.3 2 22 212 232 211 232 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZFP1-209 - 407 3.5e-15 55.8 32.8 3 8 0.00096 0.49 10.7 0.0 2 22 240 260 239 260 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZFP1-209 - 407 3.5e-15 55.8 32.8 4 8 0.025 13 6.2 0.1 2 21 268 287 267 288 0.83 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZFP1-209 - 407 3.5e-15 55.8 32.8 5 8 0.0064 3.3 8.1 1.2 2 22 296 316 295 316 0.90 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZFP1-209 - 407 3.5e-15 55.8 32.8 6 8 0.00093 0.48 10.8 0.4 2 24 324 346 323 346 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZFP1-209 - 407 3.5e-15 55.8 32.8 7 8 0.00051 0.26 11.6 0.0 2 22 352 372 351 372 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZFP1-209 - 407 3.5e-15 55.8 32.8 8 8 0.026 13 6.2 0.0 2 21 380 399 379 400 0.88 Zinc-finger double-stranded RNA-binding zf-met PF12874.7 25 ZFP1-209 - 407 1.1e-09 38.4 45.7 1 8 0.015 7.8 7.0 0.6 1 21 184 204 184 207 0.89 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZFP1-209 - 407 1.1e-09 38.4 45.7 2 8 5.4e-06 0.0027 18.0 2.0 1 21 212 232 212 235 0.92 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZFP1-209 - 407 1.1e-09 38.4 45.7 3 8 0.0024 1.2 9.6 0.3 1 21 240 260 240 263 0.92 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZFP1-209 - 407 1.1e-09 38.4 45.7 4 8 0.16 80 3.8 0.4 1 21 268 288 268 291 0.83 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZFP1-209 - 407 1.1e-09 38.4 45.7 5 8 0.099 51 4.5 1.2 1 21 296 316 296 319 0.91 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZFP1-209 - 407 1.1e-09 38.4 45.7 6 8 0.0011 0.59 10.6 0.5 1 22 324 345 324 347 0.93 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZFP1-209 - 407 1.1e-09 38.4 45.7 7 8 0.00061 0.31 11.5 0.2 1 22 352 373 352 375 0.92 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZFP1-209 - 407 1.1e-09 38.4 45.7 8 8 0.41 2.1e+02 2.5 0.1 1 19 380 398 380 401 0.87 Zinc-finger of C2H2 type Zn-ribbon_8 PF09723.10 40 ZFP1-209 - 407 1e-07 31.9 39.9 1 7 3.2 1.6e+03 -0.7 0.1 6 16 184 194 183 204 0.82 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZFP1-209 - 407 1e-07 31.9 39.9 2 7 9.2e-06 0.0047 17.0 2.3 6 35 212 248 211 253 0.91 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZFP1-209 - 407 1e-07 31.9 39.9 3 7 0.0055 2.8 8.1 7.3 6 34 268 303 267 308 0.90 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZFP1-209 - 407 1e-07 31.9 39.9 4 7 0.006 3.1 8.0 6.4 6 34 296 331 295 335 0.91 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZFP1-209 - 407 1e-07 31.9 39.9 5 7 0.018 9 6.5 0.8 6 15 324 333 322 343 0.89 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZFP1-209 - 407 1e-07 31.9 39.9 6 7 3.5e-05 0.018 15.1 4.7 6 38 352 391 351 393 0.84 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZFP1-209 - 407 1e-07 31.9 39.9 7 7 0.0069 3.5 7.8 0.5 6 18 380 392 379 402 0.80 Zinc ribbon domain # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFP1-209.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFP1-209.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFP1-209.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFP1-209.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFP1-209.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:58:38 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZFP14-201 - 533 2.4e-104 337.5 101.4 1 14 4.1e-07 0.00035 20.9 1.1 3 24 154 181 153 183 0.77 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZFP14-201 - 533 2.4e-104 337.5 101.4 2 14 2.9e-11 2.5e-08 34.0 0.4 2 25 187 210 186 211 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZFP14-201 - 533 2.4e-104 337.5 101.4 3 14 2.4e-10 2e-07 31.1 4.3 1 25 214 238 214 238 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZFP14-201 - 533 2.4e-104 337.5 101.4 4 14 9.4e-12 8e-09 35.5 0.9 2 24 243 265 242 266 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZFP14-201 - 533 2.4e-104 337.5 101.4 5 14 3.4e-12 2.9e-09 36.9 0.5 2 25 271 294 270 295 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZFP14-201 - 533 2.4e-104 337.5 101.4 6 14 7.5e-10 6.4e-07 29.5 3.5 1 25 298 322 298 323 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZFP14-201 - 533 2.4e-104 337.5 101.4 7 14 3.9e-10 3.3e-07 30.4 0.8 1 24 326 349 326 350 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZFP14-201 - 533 2.4e-104 337.5 101.4 8 14 1.9e-10 1.7e-07 31.4 0.6 2 24 355 377 354 378 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZFP14-201 - 533 2.4e-104 337.5 101.4 9 14 3.6e-10 3.1e-07 30.5 0.5 2 25 383 406 382 407 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZFP14-201 - 533 2.4e-104 337.5 101.4 10 14 9.4e-09 8e-06 26.0 0.1 2 24 411 433 410 434 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZFP14-201 - 533 2.4e-104 337.5 101.4 11 14 3.4e-09 2.9e-06 27.4 1.4 2 22 439 459 438 462 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZFP14-201 - 533 2.4e-104 337.5 101.4 12 14 6.2e-11 5.3e-08 32.9 0.4 2 24 467 489 466 490 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZFP14-201 - 533 2.4e-104 337.5 101.4 13 14 3.8e-11 3.3e-08 33.6 2.2 2 25 495 518 495 519 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZFP14-201 - 533 2.4e-104 337.5 101.4 14 14 0.71 6.1e+02 1.1 0.5 1 11 522 532 522 533 0.91 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZFP14-201 - 533 9.5e-65 211.6 104.7 1 13 1.3e-07 0.00011 22.4 1.7 1 23 172 194 172 194 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZFP14-201 - 533 9.5e-65 211.6 104.7 2 13 2.8e-07 0.00024 21.4 3.8 1 23 200 222 200 222 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZFP14-201 - 533 9.5e-65 211.6 104.7 3 13 1.3e-07 0.00011 22.5 0.2 1 23 228 250 228 250 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZFP14-201 - 533 9.5e-65 211.6 104.7 4 13 1e-07 8.8e-05 22.7 1.0 1 23 256 278 256 278 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZFP14-201 - 533 9.5e-65 211.6 104.7 5 13 1.9e-08 1.6e-05 25.1 6.6 1 23 284 306 284 306 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZFP14-201 - 533 9.5e-65 211.6 104.7 6 13 0.00013 0.11 13.0 0.3 1 23 312 334 312 334 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZFP14-201 - 533 9.5e-65 211.6 104.7 7 13 1.4e-06 0.0012 19.2 0.9 1 23 340 362 340 362 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZFP14-201 - 533 9.5e-65 211.6 104.7 8 13 4.7e-08 4e-05 23.8 1.0 1 23 368 390 368 390 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZFP14-201 - 533 9.5e-65 211.6 104.7 9 13 3.7e-07 0.00032 21.0 0.6 1 23 396 418 396 418 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZFP14-201 - 533 9.5e-65 211.6 104.7 10 13 2.5e-07 0.00022 21.5 0.2 1 23 424 446 424 446 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZFP14-201 - 533 9.5e-65 211.6 104.7 11 13 1.4e-06 0.0012 19.2 0.9 1 23 452 474 452 474 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZFP14-201 - 533 9.5e-65 211.6 104.7 12 13 5.6e-07 0.00048 20.4 0.9 1 23 480 502 480 502 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZFP14-201 - 533 9.5e-65 211.6 104.7 13 13 3e-07 0.00026 21.3 6.4 1 23 508 530 508 530 0.99 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZFP14-201 - 533 6.3e-35 116.8 102.4 1 13 8.6e-06 0.0074 17.0 1.1 1 23 172 194 172 195 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZFP14-201 - 533 6.3e-35 116.8 102.4 2 13 9.1e-05 0.078 13.9 3.1 1 23 200 222 200 223 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZFP14-201 - 533 6.3e-35 116.8 102.4 3 13 4.5e-05 0.038 14.8 0.4 1 23 228 250 228 251 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZFP14-201 - 533 6.3e-35 116.8 102.4 4 13 3.2e-05 0.028 15.3 1.0 1 23 256 278 256 279 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZFP14-201 - 533 6.3e-35 116.8 102.4 5 13 2.8e-05 0.024 15.5 4.9 1 23 284 306 284 307 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZFP14-201 - 533 6.3e-35 116.8 102.4 6 13 2.2e-05 0.019 15.8 0.8 1 23 312 334 312 335 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZFP14-201 - 533 6.3e-35 116.8 102.4 7 13 0.00029 0.25 12.3 1.2 1 23 340 362 340 363 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZFP14-201 - 533 6.3e-35 116.8 102.4 8 13 6.5e-06 0.0056 17.4 0.8 1 23 368 390 368 391 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZFP14-201 - 533 6.3e-35 116.8 102.4 9 13 0.0023 1.9 9.5 0.5 1 23 396 418 396 419 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZFP14-201 - 533 6.3e-35 116.8 102.4 10 13 0.00022 0.19 12.7 0.3 1 23 424 446 424 447 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZFP14-201 - 533 6.3e-35 116.8 102.4 11 13 0.00037 0.31 12.0 0.9 1 23 452 474 452 475 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZFP14-201 - 533 6.3e-35 116.8 102.4 12 13 0.00018 0.16 12.9 0.9 1 23 480 502 480 503 0.85 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZFP14-201 - 533 6.3e-35 116.8 102.4 13 13 0.00053 0.45 11.5 4.9 1 23 508 530 508 531 0.96 C2H2-type zinc finger KRAB PF01352.27 42 ZFP14-201 - 533 6.1e-26 89.8 0.2 1 1 1.4e-28 1.2e-25 88.9 0.2 1 42 5 46 5 46 0.99 KRAB box zf-C2H2_6 PF13912.6 27 ZFP14-201 - 533 4.2e-19 68.1 106.1 1 13 0.0012 0.99 9.5 0.9 1 11 171 181 171 183 0.95 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZFP14-201 - 533 4.2e-19 68.1 106.1 2 13 1.1 9.5e+02 -0.0 6.8 2 12 200 210 200 221 0.83 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZFP14-201 - 533 4.2e-19 68.1 106.1 3 13 1.1e-06 0.00094 19.1 0.7 2 24 228 250 228 253 0.92 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZFP14-201 - 533 4.2e-19 68.1 106.1 4 13 0.00032 0.27 11.3 0.7 2 15 256 269 256 279 0.78 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZFP14-201 - 533 4.2e-19 68.1 106.1 5 13 0.0094 8 6.6 3.5 2 22 284 304 284 309 0.82 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZFP14-201 - 533 4.2e-19 68.1 106.1 6 13 0.00014 0.12 12.4 0.7 2 22 312 332 311 334 0.83 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZFP14-201 - 533 4.2e-19 68.1 106.1 7 13 0.00038 0.33 11.0 1.6 2 20 340 358 340 363 0.82 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZFP14-201 - 533 4.2e-19 68.1 106.1 8 13 7.8e-05 0.067 13.2 0.3 2 12 368 378 368 392 0.83 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZFP14-201 - 533 4.2e-19 68.1 106.1 9 13 7.5e-05 0.064 13.3 0.9 2 21 396 415 396 418 0.92 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZFP14-201 - 533 4.2e-19 68.1 106.1 10 13 0.0018 1.5 8.9 0.5 2 20 424 442 424 447 0.81 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZFP14-201 - 533 4.2e-19 68.1 106.1 11 13 0.012 9.9 6.3 0.5 2 20 452 470 452 475 0.79 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZFP14-201 - 533 4.2e-19 68.1 106.1 12 13 0.0003 0.26 11.3 1.0 2 20 480 498 480 503 0.78 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZFP14-201 - 533 4.2e-19 68.1 106.1 13 13 0.035 30 4.8 6.2 2 12 508 518 508 530 0.82 C2H2-type zinc finger Zn-ribbon_8 PF09723.10 40 ZFP14-201 - 533 1.5e-16 60.2 78.6 1 12 0.00064 0.55 10.4 5.4 6 38 172 211 171 213 0.80 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZFP14-201 - 533 1.5e-16 60.2 78.6 2 12 0.0051 4.3 7.5 0.5 6 18 200 212 199 219 0.83 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZFP14-201 - 533 1.5e-16 60.2 78.6 3 12 4.8e-05 0.041 14.0 0.2 6 22 228 244 227 250 0.88 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZFP14-201 - 533 1.5e-16 60.2 78.6 4 12 0.00014 0.12 12.6 8.2 6 37 256 294 255 296 0.86 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZFP14-201 - 533 1.5e-16 60.2 78.6 5 12 0.00023 0.2 11.8 7.4 6 34 284 319 283 322 0.86 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZFP14-201 - 533 1.5e-16 60.2 78.6 6 12 7e-05 0.06 13.5 6.1 6 36 312 349 310 351 0.90 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZFP14-201 - 533 1.5e-16 60.2 78.6 7 12 1.1e-05 0.009 16.1 6.4 6 36 340 377 339 383 0.88 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZFP14-201 - 533 1.5e-16 60.2 78.6 8 12 0.00045 0.39 10.9 4.6 6 32 368 401 367 405 0.88 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZFP14-201 - 533 1.5e-16 60.2 78.6 9 12 0.0035 3 8.0 4.2 6 36 396 433 395 436 0.86 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZFP14-201 - 533 1.5e-16 60.2 78.6 10 12 5.8e-05 0.05 13.7 4.6 6 36 424 461 423 464 0.89 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZFP14-201 - 533 1.5e-16 60.2 78.6 11 12 0.00013 0.11 12.6 5.3 6 35 452 488 451 490 0.90 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZFP14-201 - 533 1.5e-16 60.2 78.6 12 12 3.1e-05 0.026 14.6 3.9 6 37 480 518 479 521 0.91 Zinc ribbon domain zf-C2H2_8 PF15909.5 98 ZFP14-201 - 533 1.5e-10 41.2 51.8 1 8 0.01 8.7 6.7 5.4 34 87 170 220 142 230 0.75 C2H2-type zinc ribbon zf-C2H2_8 PF15909.5 98 ZFP14-201 - 533 1.5e-10 41.2 51.8 2 8 3.1e-07 0.00026 21.2 0.7 41 88 231 277 223 284 0.85 C2H2-type zinc ribbon zf-C2H2_8 PF15909.5 98 ZFP14-201 - 533 1.5e-10 41.2 51.8 3 8 0.062 53 4.2 2.0 41 77 287 322 279 335 0.76 C2H2-type zinc ribbon zf-C2H2_8 PF15909.5 98 ZFP14-201 - 533 1.5e-10 41.2 51.8 4 8 0.0007 0.6 10.4 2.0 38 88 342 389 327 395 0.83 C2H2-type zinc ribbon zf-C2H2_8 PF15909.5 98 ZFP14-201 - 533 1.5e-10 41.2 51.8 5 8 0.00018 0.15 12.3 1.2 34 86 366 415 353 422 0.77 C2H2-type zinc ribbon zf-C2H2_8 PF15909.5 98 ZFP14-201 - 533 1.5e-10 41.2 51.8 6 8 4.2e-05 0.036 14.4 0.7 41 88 399 445 390 452 0.85 C2H2-type zinc ribbon zf-C2H2_8 PF15909.5 98 ZFP14-201 - 533 1.5e-10 41.2 51.8 7 8 0.014 12 6.3 2.2 23 88 437 501 431 506 0.76 C2H2-type zinc ribbon zf-C2H2_8 PF15909.5 98 ZFP14-201 - 533 1.5e-10 41.2 51.8 8 8 0.0035 3 8.2 7.2 23 88 465 529 454 532 0.77 C2H2-type zinc ribbon zf-C2H2_jaz PF12171.8 27 ZFP14-201 - 533 2.8e-09 37.0 66.7 1 13 4.9e-06 0.0042 17.3 0.1 2 22 172 192 171 192 0.95 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZFP14-201 - 533 2.8e-09 37.0 66.7 2 13 5.4 4.6e+03 -1.9 0.3 2 7 200 205 199 206 0.87 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZFP14-201 - 533 2.8e-09 37.0 66.7 3 13 0.043 37 4.8 0.1 2 21 228 247 227 248 0.80 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZFP14-201 - 533 2.8e-09 37.0 66.7 4 13 0.0031 2.7 8.4 0.2 2 22 256 276 255 276 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZFP14-201 - 533 2.8e-09 37.0 66.7 5 13 0.15 1.3e+02 3.0 0.8 2 11 284 293 283 303 0.91 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZFP14-201 - 533 2.8e-09 37.0 66.7 6 13 0.3 2.6e+02 2.1 0.4 2 11 312 321 311 322 0.90 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZFP14-201 - 533 2.8e-09 37.0 66.7 7 13 0.14 1.2e+02 3.1 0.7 2 12 340 350 339 360 0.82 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZFP14-201 - 533 2.8e-09 37.0 66.7 8 13 0.00074 0.63 10.4 0.1 2 22 368 388 367 388 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZFP14-201 - 533 2.8e-09 37.0 66.7 9 13 0.017 15 6.1 0.3 2 21 396 415 395 416 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZFP14-201 - 533 2.8e-09 37.0 66.7 10 13 0.019 16 5.9 0.1 2 21 424 443 423 444 0.87 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZFP14-201 - 533 2.8e-09 37.0 66.7 11 13 0.011 9.5 6.6 0.1 2 21 452 471 451 472 0.87 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZFP14-201 - 533 2.8e-09 37.0 66.7 12 13 0.12 1.1e+02 3.3 0.3 2 11 480 489 479 500 0.86 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZFP14-201 - 533 2.8e-09 37.0 66.7 13 13 0.0066 5.7 7.4 3.9 2 22 508 528 507 528 0.94 Zinc-finger double-stranded RNA-binding XPA_N PF01286.18 32 ZFP14-201 - 533 2.2e-08 34.0 64.2 1 13 0.047 40 4.4 0.1 3 12 173 182 172 190 0.84 XPA protein N-terminal XPA_N PF01286.18 32 ZFP14-201 - 533 2.2e-08 34.0 64.2 2 13 0.018 16 5.7 0.2 3 12 201 210 199 212 0.88 XPA protein N-terminal XPA_N PF01286.18 32 ZFP14-201 - 533 2.2e-08 34.0 64.2 3 13 0.0099 8.4 6.5 0.2 3 12 229 238 227 239 0.89 XPA protein N-terminal XPA_N PF01286.18 32 ZFP14-201 - 533 2.2e-08 34.0 64.2 4 13 0.013 11 6.1 0.2 3 11 257 265 255 267 0.89 XPA protein N-terminal XPA_N PF01286.18 32 ZFP14-201 - 533 2.2e-08 34.0 64.2 5 13 0.061 52 4.0 1.3 3 12 285 294 283 297 0.88 XPA protein N-terminal XPA_N PF01286.18 32 ZFP14-201 - 533 2.2e-08 34.0 64.2 6 13 0.021 18 5.5 0.3 3 11 313 321 312 322 0.91 XPA protein N-terminal XPA_N PF01286.18 32 ZFP14-201 - 533 2.2e-08 34.0 64.2 7 13 0.029 24 5.1 1.3 3 11 341 349 339 353 0.89 XPA protein N-terminal XPA_N PF01286.18 32 ZFP14-201 - 533 2.2e-08 34.0 64.2 8 13 0.011 9.8 6.3 0.2 3 11 369 377 367 381 0.90 XPA protein N-terminal XPA_N PF01286.18 32 ZFP14-201 - 533 2.2e-08 34.0 64.2 9 13 0.076 64 3.7 0.1 3 12 397 406 395 414 0.83 XPA protein N-terminal XPA_N PF01286.18 32 ZFP14-201 - 533 2.2e-08 34.0 64.2 10 13 0.0046 3.9 7.6 0.1 3 11 425 433 423 442 0.81 XPA protein N-terminal XPA_N PF01286.18 32 ZFP14-201 - 533 2.2e-08 34.0 64.2 11 13 0.019 16 5.6 0.1 3 12 453 462 451 470 0.81 XPA protein N-terminal XPA_N PF01286.18 32 ZFP14-201 - 533 2.2e-08 34.0 64.2 12 13 0.0049 4.2 7.5 0.2 3 16 481 495 479 498 0.75 XPA protein N-terminal XPA_N PF01286.18 32 ZFP14-201 - 533 2.2e-08 34.0 64.2 13 13 0.016 14 5.9 0.2 3 12 509 518 507 526 0.84 XPA protein N-terminal C1_4 PF07975.12 55 ZFP14-201 - 533 3.3e-08 33.6 66.2 1 11 0.04 34 4.8 0.7 23 35 169 181 150 195 0.85 TFIIH C1-like domain C1_4 PF07975.12 55 ZFP14-201 - 533 3.3e-08 33.6 66.2 2 11 0.018 16 5.9 4.3 1 49 173 223 173 225 0.78 TFIIH C1-like domain C1_4 PF07975.12 55 ZFP14-201 - 533 3.3e-08 33.6 66.2 3 11 0.0025 2.2 8.6 2.5 2 49 202 251 201 253 0.84 TFIIH C1-like domain C1_4 PF07975.12 55 ZFP14-201 - 533 3.3e-08 33.6 66.2 4 11 0.0014 1.2 9.4 1.9 1 48 229 278 229 281 0.83 TFIIH C1-like domain C1_4 PF07975.12 55 ZFP14-201 - 533 3.3e-08 33.6 66.2 5 11 0.00014 0.12 12.6 6.2 1 48 285 334 285 338 0.90 TFIIH C1-like domain C1_4 PF07975.12 55 ZFP14-201 - 533 3.3e-08 33.6 66.2 6 11 0.0033 2.8 8.2 0.5 25 49 339 363 335 365 0.92 TFIIH C1-like domain C1_4 PF07975.12 55 ZFP14-201 - 533 3.3e-08 33.6 66.2 7 11 0.026 22 5.4 3.7 2 48 342 390 342 393 0.80 TFIIH C1-like domain C1_4 PF07975.12 55 ZFP14-201 - 533 3.3e-08 33.6 66.2 8 11 0.00053 0.45 10.8 1.6 1 49 397 447 396 450 0.85 TFIIH C1-like domain C1_4 PF07975.12 55 ZFP14-201 - 533 3.3e-08 33.6 66.2 9 11 0.0016 1.4 9.2 1.8 2 49 426 475 425 477 0.82 TFIIH C1-like domain C1_4 PF07975.12 55 ZFP14-201 - 533 3.3e-08 33.6 66.2 10 11 0.0062 5.3 7.4 2.4 1 48 453 502 453 505 0.76 TFIIH C1-like domain C1_4 PF07975.12 55 ZFP14-201 - 533 3.3e-08 33.6 66.2 11 11 0.028 24 5.3 5.6 2 49 482 531 481 533 0.75 TFIIH C1-like domain # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFP14-201.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFP14-201.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFP14-201.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFP14-201.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFP14-201.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:58:39 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- KRAB PF01352.27 42 ZFP14-202 - 81 3.2e-26 90.7 0.6 1 1 3.2e-30 5.8e-26 89.9 0.6 1 41 5 45 5 45 0.98 KRAB box # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFP14-202.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFP14-202.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFP14-202.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFP14-202.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFP14-202.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:58:39 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZFP28-201 - 868 4e-118 381.1 114.8 1 16 0.00028 0.36 11.3 0.7 11 25 416 430 408 431 0.88 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZFP28-201 - 868 4e-118 381.1 114.8 2 16 3.3e-11 4.2e-08 33.3 0.2 2 25 435 458 434 459 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZFP28-201 - 868 4e-118 381.1 114.8 3 16 6.4e-11 8.2e-08 32.3 1.7 2 24 463 485 462 487 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZFP28-201 - 868 4e-118 381.1 114.8 4 16 1.4e-08 1.8e-05 24.9 0.1 2 25 491 515 490 516 0.87 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZFP28-201 - 868 4e-118 381.1 114.8 5 16 8.3e-12 1.1e-08 35.1 2.1 1 25 519 543 519 544 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZFP28-201 - 868 4e-118 381.1 114.8 6 16 2.9e-12 3.8e-09 36.6 0.7 2 26 548 572 547 572 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZFP28-201 - 868 4e-118 381.1 114.8 7 16 4.7e-11 6e-08 32.8 0.8 1 25 575 599 575 600 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZFP28-201 - 868 4e-118 381.1 114.8 8 16 4.3e-11 5.5e-08 32.9 0.6 1 25 603 627 603 627 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZFP28-201 - 868 4e-118 381.1 114.8 9 16 1.1e-11 1.4e-08 34.7 0.4 2 25 632 655 631 656 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZFP28-201 - 868 4e-118 381.1 114.8 10 16 9.9e-12 1.3e-08 34.9 1.8 1 25 659 683 659 684 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZFP28-201 - 868 4e-118 381.1 114.8 11 16 8.3e-12 1.1e-08 35.1 0.5 1 25 687 711 687 712 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZFP28-201 - 868 4e-118 381.1 114.8 12 16 1.3e-10 1.6e-07 31.4 1.5 3 26 717 740 715 740 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZFP28-201 - 868 4e-118 381.1 114.8 13 16 1e-10 1.3e-07 31.7 2.8 5 26 747 768 744 768 0.97 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZFP28-201 - 868 4e-118 381.1 114.8 14 16 1.2e-10 1.6e-07 31.5 0.7 1 24 771 794 771 796 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZFP28-201 - 868 4e-118 381.1 114.8 15 16 0.0001 0.13 12.8 0.8 1 24 799 822 799 824 0.85 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZFP28-201 - 868 4e-118 381.1 114.8 16 16 0.028 36 5.0 1.2 1 18 827 843 827 844 0.80 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZFP28-201 - 868 3e-64 210.0 122.9 1 15 3.5e-09 4.5e-06 26.8 2.0 1 23 420 442 420 442 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZFP28-201 - 868 3e-64 210.0 122.9 2 15 2.2e-06 0.0028 18.0 2.3 1 21 448 468 448 470 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZFP28-201 - 868 3e-64 210.0 122.9 3 15 1.4e-05 0.019 15.4 0.2 1 23 476 499 476 499 0.94 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZFP28-201 - 868 3e-64 210.0 122.9 4 15 3.5e-05 0.045 14.2 0.4 1 23 505 527 505 527 0.92 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZFP28-201 - 868 3e-64 210.0 122.9 5 15 1.7e-07 0.00022 21.5 2.8 1 23 533 555 533 555 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZFP28-201 - 868 3e-64 210.0 122.9 6 15 1.4e-06 0.0018 18.6 3.1 1 23 561 583 561 583 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZFP28-201 - 868 3e-64 210.0 122.9 7 15 1.6e-08 2e-05 24.7 1.1 1 23 589 611 589 611 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZFP28-201 - 868 3e-64 210.0 122.9 8 15 8e-08 0.0001 22.5 0.1 1 23 617 639 617 639 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZFP28-201 - 868 3e-64 210.0 122.9 9 15 3.7e-08 4.8e-05 23.6 1.8 1 23 645 667 645 667 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZFP28-201 - 868 3e-64 210.0 122.9 10 15 1.6e-08 2e-05 24.8 1.3 1 23 673 695 673 695 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZFP28-201 - 868 3e-64 210.0 122.9 11 15 1.6e-05 0.021 15.3 1.9 1 23 701 723 701 723 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZFP28-201 - 868 3e-64 210.0 122.9 12 15 3.7e-05 0.048 14.1 2.1 1 23 729 751 729 751 0.95 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZFP28-201 - 868 3e-64 210.0 122.9 13 15 7.3e-08 9.3e-05 22.7 1.2 1 23 757 779 757 779 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZFP28-201 - 868 3e-64 210.0 122.9 14 15 2.7e-06 0.0034 17.7 1.8 1 23 785 807 785 807 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZFP28-201 - 868 3e-64 210.0 122.9 15 15 0.011 14 6.4 2.8 8 23 820 835 819 835 0.96 Zinc finger, C2H2 type KRAB PF01352.27 42 ZFP28-201 - 868 9e-33 111.7 0.0 1 2 8.7e-28 1.1e-24 85.8 0.2 1 42 102 143 102 143 0.99 KRAB box KRAB PF01352.27 42 ZFP28-201 - 868 9e-33 111.7 0.0 2 2 2.7e-08 3.5e-05 23.4 0.0 1 42 231 268 231 268 0.95 KRAB box zf-C2H2_4 PF13894.6 24 ZFP28-201 - 868 2.8e-32 108.6 118.2 1 15 4.1e-05 0.053 14.4 1.6 1 23 420 442 420 443 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZFP28-201 - 868 2.8e-32 108.6 118.2 2 15 0.00056 0.72 10.8 2.1 1 21 448 468 448 470 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZFP28-201 - 868 2.8e-32 108.6 118.2 3 15 6.4e-05 0.082 13.8 0.2 1 24 476 499 476 499 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZFP28-201 - 868 2.8e-32 108.6 118.2 4 15 0.00086 1.1 10.3 0.2 3 23 507 527 505 528 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZFP28-201 - 868 2.8e-32 108.6 118.2 5 15 0.00013 0.17 12.8 2.0 1 23 533 555 533 556 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZFP28-201 - 868 2.8e-32 108.6 118.2 6 15 0.00059 0.76 10.8 3.0 1 23 561 583 561 584 0.91 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZFP28-201 - 868 2.8e-32 108.6 118.2 7 15 9.8e-05 0.13 13.2 1.0 1 23 589 611 589 612 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZFP28-201 - 868 2.8e-32 108.6 118.2 8 15 8.3e-05 0.11 13.4 0.2 1 23 617 639 617 640 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZFP28-201 - 868 2.8e-32 108.6 118.2 9 15 8e-06 0.01 16.6 2.0 1 23 645 667 645 668 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZFP28-201 - 868 2.8e-32 108.6 118.2 10 15 2.3e-05 0.03 15.1 1.2 1 23 673 695 673 696 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZFP28-201 - 868 2.8e-32 108.6 118.2 11 15 0.0018 2.2 9.3 1.5 1 23 701 723 701 724 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZFP28-201 - 868 2.8e-32 108.6 118.2 12 15 2.1e-05 0.027 15.3 2.0 1 23 729 751 729 752 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZFP28-201 - 868 2.8e-32 108.6 118.2 13 15 1.9e-05 0.024 15.4 1.5 1 23 757 779 757 780 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZFP28-201 - 868 2.8e-32 108.6 118.2 14 15 0.00012 0.16 12.9 1.3 1 23 785 807 785 808 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZFP28-201 - 868 2.8e-32 108.6 118.2 15 15 2.5 3.2e+03 -0.5 1.4 8 23 820 835 819 836 0.84 C2H2-type zinc finger zf-C2H2_jaz PF12171.8 27 ZFP28-201 - 868 1.7e-17 63.2 65.6 1 14 0.0035 4.4 7.7 0.5 2 22 420 440 419 440 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZFP28-201 - 868 1.7e-17 63.2 65.6 2 14 0.0076 9.8 6.6 0.0 2 22 448 468 447 468 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZFP28-201 - 868 1.7e-17 63.2 65.6 3 14 0.0046 5.9 7.3 0.0 2 21 476 495 475 496 0.90 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZFP28-201 - 868 1.7e-17 63.2 65.6 4 14 0.0043 5.5 7.4 0.0 2 21 505 524 504 525 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZFP28-201 - 868 1.7e-17 63.2 65.6 5 14 0.041 53 4.3 0.2 2 12 533 543 532 553 0.75 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZFP28-201 - 868 1.7e-17 63.2 65.6 6 14 7.6e-05 0.098 13.0 0.6 2 22 561 581 560 581 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZFP28-201 - 868 1.7e-17 63.2 65.6 7 14 0.03 39 4.7 0.2 2 21 589 608 588 609 0.80 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZFP28-201 - 868 1.7e-17 63.2 65.6 8 14 0.0034 4.4 7.7 0.0 2 22 617 637 616 637 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZFP28-201 - 868 1.7e-17 63.2 65.6 9 14 0.0037 4.8 7.6 1.9 2 24 645 667 644 667 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZFP28-201 - 868 1.7e-17 63.2 65.6 10 14 0.034 44 4.5 0.3 2 21 673 692 672 693 0.80 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZFP28-201 - 868 1.7e-17 63.2 65.6 11 14 0.053 68 3.9 0.3 2 21 701 720 700 721 0.89 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZFP28-201 - 868 1.7e-17 63.2 65.6 12 14 0.00029 0.37 11.1 0.9 2 24 729 751 728 751 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZFP28-201 - 868 1.7e-17 63.2 65.6 13 14 0.0027 3.4 8.1 0.1 2 22 757 777 756 777 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZFP28-201 - 868 1.7e-17 63.2 65.6 14 14 0.0012 1.5 9.2 0.5 2 21 785 804 784 805 0.86 Zinc-finger double-stranded RNA-binding zf-C2H2_6 PF13912.6 27 ZFP28-201 - 868 3.4e-17 62.0 110.6 1 15 0.00034 0.43 10.6 1.0 2 18 420 436 419 443 0.77 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZFP28-201 - 868 3.4e-17 62.0 110.6 2 15 0.0028 3.5 7.7 3.5 2 24 448 470 448 473 0.87 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZFP28-201 - 868 3.4e-17 62.0 110.6 3 15 0.034 43 4.3 0.2 2 11 476 485 476 499 0.81 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZFP28-201 - 868 3.4e-17 62.0 110.6 4 15 1.1 1.5e+03 -0.6 0.1 6 24 509 527 505 529 0.75 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZFP28-201 - 868 3.4e-17 62.0 110.6 5 15 3.4e-07 0.00043 20.2 1.5 2 24 533 555 533 558 0.90 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZFP28-201 - 868 3.4e-17 62.0 110.6 6 15 0.0024 3.1 7.9 2.4 2 24 561 583 561 586 0.87 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZFP28-201 - 868 3.4e-17 62.0 110.6 7 15 0.00093 1.2 9.2 0.2 2 12 589 599 589 610 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZFP28-201 - 868 3.4e-17 62.0 110.6 8 15 0.00075 0.97 9.5 0.2 2 12 617 627 617 637 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZFP28-201 - 868 3.4e-17 62.0 110.6 9 15 0.0098 13 6.0 4.9 2 12 645 655 645 669 0.76 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZFP28-201 - 868 3.4e-17 62.0 110.6 10 15 0.00024 0.31 11.1 1.6 2 22 673 693 673 697 0.84 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZFP28-201 - 868 3.4e-17 62.0 110.6 11 15 0.023 29 4.8 0.1 2 11 701 710 701 711 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZFP28-201 - 868 3.4e-17 62.0 110.6 12 15 1.6e-05 0.02 14.9 2.2 2 24 729 751 729 754 0.96 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZFP28-201 - 868 3.4e-17 62.0 110.6 13 15 0.00013 0.16 12.0 1.7 2 23 757 778 757 782 0.85 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZFP28-201 - 868 3.4e-17 62.0 110.6 14 15 0.00054 0.69 10.0 1.2 2 24 785 807 785 810 0.91 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZFP28-201 - 868 3.4e-17 62.0 110.6 15 15 3.9 4.9e+03 -2.3 0.5 19 26 826 833 825 834 0.82 C2H2-type zinc finger Zn-ribbon_8 PF09723.10 40 ZFP28-201 - 868 2e-07 31.0 73.2 1 11 4.8e-05 0.062 13.4 3.6 6 34 420 455 419 459 0.92 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZFP28-201 - 868 2e-07 31.0 73.2 2 11 0.0014 1.8 8.8 5.7 6 34 448 483 447 487 0.91 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZFP28-201 - 868 2e-07 31.0 73.2 3 11 0.0053 6.7 6.9 0.8 6 35 505 541 498 544 0.87 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZFP28-201 - 868 2e-07 31.0 73.2 4 11 0.0034 4.4 7.5 2.4 6 34 533 568 532 571 0.92 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZFP28-201 - 868 2e-07 31.0 73.2 5 11 0.002 2.6 8.2 4.0 6 38 561 600 560 602 0.85 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZFP28-201 - 868 2e-07 31.0 73.2 6 11 0.00012 0.16 12.2 1.5 6 35 617 653 616 660 0.88 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZFP28-201 - 868 2e-07 31.0 73.2 7 11 9.8e-05 0.13 12.5 3.8 6 34 673 708 672 711 0.91 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZFP28-201 - 868 2e-07 31.0 73.2 8 11 0.022 28 4.9 4.8 6 35 701 737 700 742 0.86 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZFP28-201 - 868 2e-07 31.0 73.2 9 11 0.02 25 5.1 4.5 6 34 729 764 728 764 0.81 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZFP28-201 - 868 2e-07 31.0 73.2 10 11 0.00029 0.37 10.9 3.6 6 34 757 792 756 797 0.84 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZFP28-201 - 868 2e-07 31.0 73.2 11 11 0.076 97 3.2 0.9 6 15 785 794 784 802 0.87 Zinc ribbon domain # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFP28-201.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFP28-201.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFP28-201.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFP28-201.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFP28-201.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:58:40 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFP28-202.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFP28-202.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFP28-202.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFP28-202.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFP28-202.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:58:40 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- KRAB PF01352.27 42 ZFP28-203 - 86 2e-26 91.3 0.2 1 1 1.5e-30 2.7e-26 91.0 0.2 1 42 5 46 5 46 0.99 KRAB box # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFP28-203.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFP28-203.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFP28-203.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFP28-203.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFP28-203.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:58:40 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- KRAB PF01352.27 42 ZFP28-204 - 349 1.2e-33 114.5 0.0 1 2 1.9e-29 3.5e-25 87.4 0.2 1 42 102 143 102 143 0.99 KRAB box KRAB PF01352.27 42 ZFP28-204 - 349 1.2e-33 114.5 0.0 2 2 6.2e-10 1.1e-05 24.9 0.0 1 42 231 268 231 268 0.95 KRAB box # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFP28-204.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFP28-204.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFP28-204.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFP28-204.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFP28-204.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:58:41 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFP28-205.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFP28-205.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFP28-205.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFP28-205.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFP28-205.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:58:41 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZFP3-201 - 502 2.9e-104 337.3 86.9 1 13 5.7e-06 0.0041 17.5 0.5 11 25 137 151 130 152 0.90 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZFP3-201 - 502 2.9e-104 337.3 86.9 2 13 5.8e-12 4.1e-09 36.4 0.9 1 26 155 180 155 180 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZFP3-201 - 502 2.9e-104 337.3 86.9 3 13 1.3e-10 9.4e-08 32.2 0.1 1 24 183 206 183 208 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZFP3-201 - 502 2.9e-104 337.3 86.9 4 13 4.5e-09 3.2e-06 27.3 3.7 2 25 212 235 211 236 0.90 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZFP3-201 - 502 2.9e-104 337.3 86.9 5 13 7.8e-11 5.6e-08 32.9 0.2 2 24 240 262 239 263 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZFP3-201 - 502 2.9e-104 337.3 86.9 6 13 3e-08 2.1e-05 24.7 1.9 2 26 268 292 267 292 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZFP3-201 - 502 2.9e-104 337.3 86.9 7 13 2.9e-10 2.1e-07 31.0 0.1 2 25 296 319 295 320 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZFP3-201 - 502 2.9e-104 337.3 86.9 8 13 1.5e-11 1.1e-08 35.1 0.1 2 25 324 347 323 348 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZFP3-201 - 502 2.9e-104 337.3 86.9 9 13 3.7e-11 2.6e-08 33.9 0.7 4 24 354 374 353 375 0.97 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZFP3-201 - 502 2.9e-104 337.3 86.9 10 13 4.9e-11 3.5e-08 33.5 0.7 2 25 380 403 379 404 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZFP3-201 - 502 2.9e-104 337.3 86.9 11 13 1.5e-09 1.1e-06 28.8 0.5 2 24 408 430 407 432 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZFP3-201 - 502 2.9e-104 337.3 86.9 12 13 6.3e-10 4.5e-07 30.0 0.2 4 25 438 459 435 460 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZFP3-201 - 502 2.9e-104 337.3 86.9 13 13 2.2e-10 1.6e-07 31.4 0.3 5 25 467 487 464 488 0.94 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZFP3-201 - 502 2e-80 261.0 89.7 1 13 3e-09 2.1e-06 27.8 3.0 1 23 141 163 141 163 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZFP3-201 - 502 2e-80 261.0 89.7 2 13 2.6e-09 1.8e-06 28.0 0.8 1 23 169 191 169 191 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZFP3-201 - 502 2e-80 261.0 89.7 3 13 1.6e-07 0.00011 22.4 3.4 1 23 197 219 197 219 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZFP3-201 - 502 2e-80 261.0 89.7 4 13 5.6e-09 4e-06 27.0 0.1 1 23 225 247 225 247 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZFP3-201 - 502 2e-80 261.0 89.7 5 13 7.3e-09 5.3e-06 26.6 0.4 1 23 253 275 253 275 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZFP3-201 - 502 2e-80 261.0 89.7 6 13 2.8e-08 2e-05 24.8 2.0 1 23 281 303 281 303 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZFP3-201 - 502 2e-80 261.0 89.7 7 13 8.2e-08 5.9e-05 23.3 0.1 1 23 309 331 309 331 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZFP3-201 - 502 2e-80 261.0 89.7 8 13 3.9e-08 2.8e-05 24.3 0.1 1 23 337 359 337 359 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZFP3-201 - 502 2e-80 261.0 89.7 9 13 4.8e-08 3.5e-05 24.0 0.1 1 23 365 387 365 387 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZFP3-201 - 502 2e-80 261.0 89.7 10 13 6.3e-09 4.5e-06 26.8 1.3 1 23 393 415 393 415 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZFP3-201 - 502 2e-80 261.0 89.7 11 13 0.00023 0.16 12.5 0.6 1 23 421 443 421 443 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZFP3-201 - 502 2e-80 261.0 89.7 12 13 6.1e-08 4.3e-05 23.7 1.2 1 23 449 471 449 471 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZFP3-201 - 502 2e-80 261.0 89.7 13 13 2.4e-08 1.7e-05 25.0 3.1 1 23 477 499 477 499 0.98 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZFP3-201 - 502 5.5e-44 145.0 86.2 1 13 1.4e-05 0.0097 16.7 2.4 1 23 141 163 141 164 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZFP3-201 - 502 5.5e-44 145.0 86.2 2 13 1.2e-07 8.3e-05 23.1 0.4 1 23 169 191 169 192 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZFP3-201 - 502 5.5e-44 145.0 86.2 3 13 0.00056 0.4 11.6 2.7 1 23 197 219 197 220 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZFP3-201 - 502 5.5e-44 145.0 86.2 4 13 3.7e-05 0.027 15.3 0.2 1 23 225 247 225 248 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZFP3-201 - 502 5.5e-44 145.0 86.2 5 13 1.4e-05 0.01 16.6 0.3 1 23 253 275 253 276 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZFP3-201 - 502 5.5e-44 145.0 86.2 6 13 0.00011 0.08 13.8 1.6 1 23 281 303 281 304 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZFP3-201 - 502 5.5e-44 145.0 86.2 7 13 6e-05 0.043 14.7 0.1 1 23 309 331 309 332 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZFP3-201 - 502 5.5e-44 145.0 86.2 8 13 2.9e-05 0.02 15.7 0.1 1 23 337 359 337 360 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZFP3-201 - 502 5.5e-44 145.0 86.2 9 13 7.3e-06 0.0052 17.5 0.2 1 23 365 387 365 388 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZFP3-201 - 502 5.5e-44 145.0 86.2 10 13 0.00057 0.41 11.6 1.1 1 23 393 415 393 416 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZFP3-201 - 502 5.5e-44 145.0 86.2 11 13 0.00055 0.39 11.7 0.4 1 23 421 443 421 444 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZFP3-201 - 502 5.5e-44 145.0 86.2 12 13 5e-05 0.036 14.9 1.1 1 23 449 471 449 472 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZFP3-201 - 502 5.5e-44 145.0 86.2 13 13 1.9e-05 0.014 16.2 3.0 1 23 477 499 477 499 0.92 C2H2-type zinc finger zf-C2H2_jaz PF12171.8 27 ZFP3-201 - 502 2.9e-20 72.0 49.3 1 13 0.0047 3.4 8.1 0.6 2 22 141 161 140 161 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZFP3-201 - 502 2.9e-20 72.0 49.3 2 13 3.8e-06 0.0027 17.9 0.0 2 22 169 189 168 189 0.95 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZFP3-201 - 502 2.9e-20 72.0 49.3 3 13 0.73 5.2e+02 1.1 0.2 2 12 197 207 196 215 0.83 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZFP3-201 - 502 2.9e-20 72.0 49.3 4 13 0.0072 5.2 7.5 0.1 2 21 225 244 224 245 0.90 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZFP3-201 - 502 2.9e-20 72.0 49.3 5 13 0.003 2.2 8.7 0.1 2 22 253 273 252 273 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZFP3-201 - 502 2.9e-20 72.0 49.3 6 13 0.016 11 6.4 0.9 2 22 281 301 280 301 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZFP3-201 - 502 2.9e-20 72.0 49.3 7 13 0.38 2.7e+02 2.0 0.0 4 22 311 329 309 329 0.90 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZFP3-201 - 502 2.9e-20 72.0 49.3 8 13 0.066 47 4.4 0.0 2 21 337 356 336 357 0.79 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZFP3-201 - 502 2.9e-20 72.0 49.3 9 13 0.0022 1.6 9.1 0.0 2 22 365 385 364 385 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZFP3-201 - 502 2.9e-20 72.0 49.3 10 13 0.072 51 4.3 0.1 2 21 393 412 392 413 0.84 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZFP3-201 - 502 2.9e-20 72.0 49.3 11 13 0.16 1.1e+02 3.2 0.3 4 22 423 441 420 441 0.87 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZFP3-201 - 502 2.9e-20 72.0 49.3 12 13 0.00068 0.49 10.8 0.6 2 21 449 468 448 469 0.91 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZFP3-201 - 502 2.9e-20 72.0 49.3 13 13 2e-05 0.014 15.7 0.4 2 21 477 496 476 497 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_6 PF13912.6 27 ZFP3-201 - 502 5.4e-18 64.5 93.8 1 14 0.00084 0.6 10.2 2.3 2 24 141 163 141 166 0.88 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZFP3-201 - 502 5.4e-18 64.5 93.8 2 14 4.1e-07 0.00029 20.7 0.5 2 24 169 191 169 194 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZFP3-201 - 502 5.4e-18 64.5 93.8 3 14 0.026 18 5.4 0.3 2 11 197 206 197 207 0.92 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZFP3-201 - 502 5.4e-18 64.5 93.8 4 14 7.7 5.5e+03 -2.5 2.5 20 26 211 217 210 218 0.85 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZFP3-201 - 502 5.4e-18 64.5 93.8 5 14 0.002 1.4 9.0 0.3 2 20 225 243 225 249 0.82 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZFP3-201 - 502 5.4e-18 64.5 93.8 6 14 0.00022 0.16 12.0 0.2 2 12 253 263 253 275 0.90 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZFP3-201 - 502 5.4e-18 64.5 93.8 7 14 0.00028 0.2 11.7 1.7 1 20 280 299 280 305 0.78 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZFP3-201 - 502 5.4e-18 64.5 93.8 8 14 0.0068 4.9 7.3 0.3 2 20 309 327 309 332 0.77 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZFP3-201 - 502 5.4e-18 64.5 93.8 9 14 0.00038 0.27 11.3 0.5 2 12 337 347 337 348 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZFP3-201 - 502 5.4e-18 64.5 93.8 10 14 0.0027 1.9 8.6 0.6 2 12 365 375 365 375 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZFP3-201 - 502 5.4e-18 64.5 93.8 11 14 0.014 9.9 6.3 0.5 2 13 393 404 393 415 0.83 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZFP3-201 - 502 5.4e-18 64.5 93.8 12 14 0.15 1e+02 3.0 0.6 2 11 421 430 421 430 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZFP3-201 - 502 5.4e-18 64.5 93.8 13 14 0.00048 0.35 10.9 0.4 2 12 449 459 449 469 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZFP3-201 - 502 5.4e-18 64.5 93.8 14 14 0.0016 1.1 9.3 1.5 2 12 477 487 477 489 0.93 C2H2-type zinc finger XPA_N PF01286.18 32 ZFP3-201 - 502 1.8e-17 63.0 51.9 1 13 0.0037 2.7 8.1 0.1 3 12 142 151 140 160 0.80 XPA protein N-terminal XPA_N PF01286.18 32 ZFP3-201 - 502 1.8e-17 63.0 51.9 2 13 0.0054 3.8 7.6 0.1 3 12 170 179 168 187 0.85 XPA protein N-terminal XPA_N PF01286.18 32 ZFP3-201 - 502 1.8e-17 63.0 51.9 3 13 0.0075 5.4 7.1 0.1 4 14 199 209 197 214 0.91 XPA protein N-terminal XPA_N PF01286.18 32 ZFP3-201 - 502 1.8e-17 63.0 51.9 4 13 0.0034 2.4 8.3 0.2 3 12 226 235 224 240 0.88 XPA protein N-terminal XPA_N PF01286.18 32 ZFP3-201 - 502 1.8e-17 63.0 51.9 5 13 0.0046 3.3 7.8 0.1 3 14 254 265 252 271 0.84 XPA protein N-terminal XPA_N PF01286.18 32 ZFP3-201 - 502 1.8e-17 63.0 51.9 6 13 0.0028 2 8.5 0.4 2 14 281 293 280 294 0.89 XPA protein N-terminal XPA_N PF01286.18 32 ZFP3-201 - 502 1.8e-17 63.0 51.9 7 13 0.0082 5.9 7.0 0.1 4 14 311 321 308 322 0.91 XPA protein N-terminal XPA_N PF01286.18 32 ZFP3-201 - 502 1.8e-17 63.0 51.9 8 13 0.012 8.5 6.5 0.2 3 12 338 347 336 349 0.88 XPA protein N-terminal XPA_N PF01286.18 32 ZFP3-201 - 502 1.8e-17 63.0 51.9 9 13 0.011 8.2 6.6 0.0 3 12 366 375 364 383 0.80 XPA protein N-terminal XPA_N PF01286.18 32 ZFP3-201 - 502 1.8e-17 63.0 51.9 10 13 0.0054 3.8 7.6 0.1 3 12 394 403 392 408 0.87 XPA protein N-terminal XPA_N PF01286.18 32 ZFP3-201 - 502 1.8e-17 63.0 51.9 11 13 0.12 90 3.2 0.1 3 13 422 432 420 437 0.86 XPA protein N-terminal XPA_N PF01286.18 32 ZFP3-201 - 502 1.8e-17 63.0 51.9 12 13 0.027 19 5.4 0.3 3 12 450 459 448 465 0.86 XPA protein N-terminal XPA_N PF01286.18 32 ZFP3-201 - 502 1.8e-17 63.0 51.9 13 13 0.0014 0.98 9.5 0.2 3 14 478 489 476 495 0.85 XPA protein N-terminal Zn-ribbon_8 PF09723.10 40 ZFP3-201 - 502 1.4e-13 50.7 66.0 1 11 0.026 19 5.5 0.4 18 35 131 149 126 153 0.65 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZFP3-201 - 502 1.4e-13 50.7 66.0 2 11 0.0072 5.2 7.3 5.7 8 34 143 176 139 178 0.81 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZFP3-201 - 502 1.4e-13 50.7 66.0 3 11 0.0023 1.6 8.9 3.7 6 34 169 204 168 209 0.80 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZFP3-201 - 502 1.4e-13 50.7 66.0 4 11 0.11 82 3.4 0.3 6 15 197 206 196 213 0.86 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZFP3-201 - 502 1.4e-13 50.7 66.0 5 11 8.7e-06 0.0063 16.6 3.9 6 36 225 262 224 268 0.90 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZFP3-201 - 502 1.4e-13 50.7 66.0 6 11 8.6e-05 0.062 13.4 5.1 6 35 253 289 252 292 0.86 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZFP3-201 - 502 1.4e-13 50.7 66.0 7 11 3.3e-05 0.024 14.8 1.0 7 34 282 316 279 322 0.92 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZFP3-201 - 502 1.4e-13 50.7 66.0 8 11 3.6e-05 0.026 14.6 2.9 6 36 337 374 336 377 0.82 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZFP3-201 - 502 1.4e-13 50.7 66.0 9 11 0.00027 0.19 11.9 2.2 6 33 393 427 392 430 0.92 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZFP3-201 - 502 1.4e-13 50.7 66.0 10 11 0.0014 0.98 9.6 7.1 6 38 449 488 448 490 0.91 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZFP3-201 - 502 1.4e-13 50.7 66.0 11 11 0.0091 6.5 7.0 1.4 6 17 477 488 475 500 0.79 Zinc ribbon domain zf-C2H2_8 PF15909.5 98 ZFP3-201 - 502 1.1e-12 48.1 41.0 1 7 1.3e-05 0.0096 16.2 1.5 19 90 124 192 109 198 0.76 C2H2-type zinc ribbon zf-C2H2_8 PF15909.5 98 ZFP3-201 - 502 1.1e-12 48.1 41.0 2 7 0.00054 0.39 11.1 1.3 36 88 197 246 191 252 0.84 C2H2-type zinc ribbon zf-C2H2_8 PF15909.5 98 ZFP3-201 - 502 1.1e-12 48.1 41.0 3 7 6.3e-05 0.045 14.0 1.7 38 88 255 302 245 308 0.86 C2H2-type zinc ribbon zf-C2H2_8 PF15909.5 98 ZFP3-201 - 502 1.1e-12 48.1 41.0 4 7 0.0032 2.3 8.6 0.0 41 88 312 358 304 364 0.85 C2H2-type zinc ribbon zf-C2H2_8 PF15909.5 98 ZFP3-201 - 502 1.1e-12 48.1 41.0 5 7 0.0037 2.6 8.4 0.5 41 87 368 413 360 422 0.73 C2H2-type zinc ribbon zf-C2H2_8 PF15909.5 98 ZFP3-201 - 502 1.1e-12 48.1 41.0 6 7 7.3e-05 0.052 13.8 1.4 40 88 423 470 406 477 0.81 C2H2-type zinc ribbon zf-C2H2_8 PF15909.5 98 ZFP3-201 - 502 1.1e-12 48.1 41.0 7 7 0.0026 1.9 8.9 2.8 36 88 449 498 444 502 0.83 C2H2-type zinc ribbon zinc_ribbon_15 PF17032.5 86 ZFP3-201 - 502 4.6e-09 36.9 48.1 1 10 0.25 1.8e+02 3.0 0.3 59 78 134 153 115 159 0.65 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZFP3-201 - 502 4.6e-09 36.9 48.1 2 10 0.0015 1.1 10.1 2.0 38 76 141 179 131 184 0.88 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZFP3-201 - 502 4.6e-09 36.9 48.1 3 10 0.0011 0.77 10.6 2.9 30 77 161 208 156 240 0.56 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZFP3-201 - 502 4.6e-09 36.9 48.1 4 10 0.001 0.73 10.6 1.1 29 76 216 263 209 268 0.83 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZFP3-201 - 502 4.6e-09 36.9 48.1 5 10 0.00023 0.17 12.7 1.8 31 77 246 292 239 297 0.86 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZFP3-201 - 502 4.6e-09 36.9 48.1 6 10 0.0029 2.1 9.2 5.4 26 73 269 316 253 324 0.71 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZFP3-201 - 502 4.6e-09 36.9 48.1 7 10 0.0003 0.22 12.3 0.5 30 78 301 349 295 352 0.84 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZFP3-201 - 502 4.6e-09 36.9 48.1 8 10 7.4e-05 0.053 14.3 0.7 30 77 329 376 323 380 0.87 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZFP3-201 - 502 4.6e-09 36.9 48.1 9 10 0.01 7.5 7.4 3.1 26 76 353 403 351 436 0.83 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZFP3-201 - 502 4.6e-09 36.9 48.1 10 10 0.0037 2.7 8.8 3.1 35 77 446 488 436 492 0.84 zinc-ribbon family zf_UBZ PF18439.1 32 ZFP3-201 - 502 3.1e-08 33.1 57.9 1 13 0.016 11 5.7 0.4 3 15 141 153 139 160 0.78 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZFP3-201 - 502 3.1e-08 33.1 57.9 2 13 0.022 16 5.2 0.1 3 13 169 179 167 188 0.80 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZFP3-201 - 502 3.1e-08 33.1 57.9 3 13 0.047 34 4.2 0.2 3 16 197 210 195 215 0.79 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZFP3-201 - 502 3.1e-08 33.1 57.9 4 13 0.0019 1.4 8.6 0.1 3 15 225 237 223 244 0.84 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZFP3-201 - 502 3.1e-08 33.1 57.9 5 13 0.0019 1.3 8.6 0.2 3 21 253 272 251 272 0.91 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZFP3-201 - 502 3.1e-08 33.1 57.9 6 13 0.078 56 3.5 0.2 3 15 281 293 279 300 0.82 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZFP3-201 - 502 3.1e-08 33.1 57.9 7 13 0.026 19 5.0 0.1 3 18 309 325 307 328 0.76 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZFP3-201 - 502 3.1e-08 33.1 57.9 8 13 0.036 26 4.5 0.2 3 13 337 347 335 355 0.82 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZFP3-201 - 502 3.1e-08 33.1 57.9 9 13 0.0045 3.3 7.4 0.1 3 20 365 383 363 384 0.79 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZFP3-201 - 502 3.1e-08 33.1 57.9 10 13 0.37 2.6e+02 1.3 0.1 3 12 393 402 391 408 0.83 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZFP3-201 - 502 3.1e-08 33.1 57.9 11 13 0.54 3.9e+02 0.8 0.2 3 20 421 439 419 440 0.80 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZFP3-201 - 502 3.1e-08 33.1 57.9 12 13 0.0045 3.2 7.4 0.8 3 17 449 464 447 468 0.82 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZFP3-201 - 502 3.1e-08 33.1 57.9 13 13 0.0063 4.5 7.0 0.5 3 15 477 489 475 496 0.79 Ubiquitin-Binding Zinc Finger # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFP3-201.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFP3-201.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFP3-201.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFP3-201.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFP3-201.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:58:42 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZFP37-201 - 630 1e-97 316.5 98.4 1 13 0.037 35 5.1 3.7 13 23 291 301 255 304 0.83 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZFP37-201 - 630 1e-97 316.5 98.4 2 13 1e-09 9.7e-07 28.9 0.0 2 25 308 331 307 332 0.90 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZFP37-201 - 630 1e-97 316.5 98.4 3 13 5.8e-10 5.4e-07 29.7 2.4 1 24 335 358 335 360 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZFP37-201 - 630 1e-97 316.5 98.4 4 13 8.5e-12 8e-09 35.5 0.7 1 26 363 388 363 388 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZFP37-201 - 630 1e-97 316.5 98.4 5 13 7.3e-12 6.9e-09 35.7 0.8 1 25 391 415 391 416 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZFP37-201 - 630 1e-97 316.5 98.4 6 13 1.6e-10 1.5e-07 31.5 0.4 1 26 419 444 419 444 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZFP37-201 - 630 1e-97 316.5 98.4 7 13 5.6e-13 5.2e-10 39.3 0.7 1 25 447 471 447 472 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZFP37-201 - 630 1e-97 316.5 98.4 8 13 1.4e-09 1.3e-06 28.5 3.6 4 26 478 500 475 500 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZFP37-201 - 630 1e-97 316.5 98.4 9 13 1.5e-12 1.4e-09 37.9 0.5 1 26 503 528 503 528 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZFP37-201 - 630 1e-97 316.5 98.4 10 13 2.1e-12 2e-09 37.5 0.2 1 25 531 555 531 556 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZFP37-201 - 630 1e-97 316.5 98.4 11 13 9.8e-11 9.3e-08 32.2 0.8 2 25 560 583 559 584 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZFP37-201 - 630 1e-97 316.5 98.4 12 13 1e-11 9.8e-09 35.3 0.4 2 26 588 612 587 612 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZFP37-201 - 630 1e-97 316.5 98.4 13 13 0.21 2e+02 2.7 0.6 1 15 615 629 615 630 0.85 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZFP37-201 - 630 5.2e-70 228.2 98.7 1 12 1.8e-06 0.0017 18.7 0.5 1 23 293 315 293 315 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZFP37-201 - 630 5.2e-70 228.2 98.7 2 12 1.5e-09 1.4e-06 28.4 0.6 1 23 321 343 321 343 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZFP37-201 - 630 5.2e-70 228.2 98.7 3 12 0.06 57 4.4 2.5 1 23 349 371 349 371 0.94 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZFP37-201 - 630 5.2e-70 228.2 98.7 4 12 8.2e-09 7.7e-06 26.1 1.2 1 23 377 399 377 399 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZFP37-201 - 630 5.2e-70 228.2 98.7 5 12 3.5e-09 3.3e-06 27.2 1.3 1 23 405 427 405 427 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZFP37-201 - 630 5.2e-70 228.2 98.7 6 12 2.7e-10 2.5e-07 30.8 0.9 1 23 433 455 433 455 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZFP37-201 - 630 5.2e-70 228.2 98.7 7 12 2.3e-09 2.2e-06 27.8 1.5 1 23 461 483 461 483 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZFP37-201 - 630 5.2e-70 228.2 98.7 8 12 5.7e-09 5.4e-06 26.6 2.7 1 23 489 511 489 511 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZFP37-201 - 630 5.2e-70 228.2 98.7 9 12 2.3e-07 0.00022 21.5 0.2 1 23 517 539 517 539 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZFP37-201 - 630 5.2e-70 228.2 98.7 10 12 2.8e-10 2.6e-07 30.7 1.2 1 23 545 567 545 567 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZFP37-201 - 630 5.2e-70 228.2 98.7 11 12 3.4e-08 3.2e-05 24.1 0.2 1 23 573 595 573 595 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZFP37-201 - 630 5.2e-70 228.2 98.7 12 12 3.1e-09 2.9e-06 27.4 0.8 1 23 601 623 601 623 0.99 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZFP37-201 - 630 1.8e-37 124.7 93.9 1 12 0.0001 0.095 13.6 0.5 1 23 293 315 293 316 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZFP37-201 - 630 1.8e-37 124.7 93.9 2 12 2.6e-05 0.025 15.4 0.8 1 23 321 343 321 344 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZFP37-201 - 630 1.8e-37 124.7 93.9 3 12 0.01 9.7 7.3 1.7 1 23 349 371 349 372 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZFP37-201 - 630 1.8e-37 124.7 93.9 4 12 2.1e-05 0.02 15.7 1.1 1 23 377 399 377 400 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZFP37-201 - 630 1.8e-37 124.7 93.9 5 12 2.2e-06 0.0021 18.8 1.0 1 23 405 427 405 428 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZFP37-201 - 630 1.8e-37 124.7 93.9 6 12 2.2e-06 0.0021 18.8 0.7 1 23 433 455 433 456 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZFP37-201 - 630 1.8e-37 124.7 93.9 7 12 1.5e-05 0.014 16.2 1.3 1 23 461 483 461 484 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZFP37-201 - 630 1.8e-37 124.7 93.9 8 12 2e-05 0.019 15.8 1.7 1 23 489 511 489 512 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZFP37-201 - 630 1.8e-37 124.7 93.9 9 12 1.4e-05 0.013 16.3 0.2 1 23 517 539 517 540 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZFP37-201 - 630 1.8e-37 124.7 93.9 10 12 4.1e-06 0.0038 17.9 1.1 1 23 545 567 545 568 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZFP37-201 - 630 1.8e-37 124.7 93.9 11 12 0.00019 0.18 12.7 0.3 1 23 573 595 573 596 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZFP37-201 - 630 1.8e-37 124.7 93.9 12 12 4.9e-07 0.00046 20.8 0.7 1 23 601 623 601 624 0.96 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZFP37-201 - 630 7.7e-25 86.4 91.9 1 12 0.00032 0.3 11.1 0.7 2 24 293 315 293 318 0.90 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZFP37-201 - 630 7.7e-25 86.4 91.9 2 12 0.075 71 3.6 0.3 2 11 321 330 321 343 0.88 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZFP37-201 - 630 7.7e-25 86.4 91.9 3 12 0.85 8e+02 0.2 1.5 2 21 349 368 349 373 0.71 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZFP37-201 - 630 7.7e-25 86.4 91.9 4 12 4.4e-05 0.042 13.9 1.3 2 24 377 399 377 402 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZFP37-201 - 630 7.7e-25 86.4 91.9 5 12 1.6e-07 0.00015 21.7 1.5 2 24 405 427 405 430 0.95 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZFP37-201 - 630 7.7e-25 86.4 91.9 6 12 4.8e-07 0.00045 20.1 1.2 2 24 433 455 433 458 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZFP37-201 - 630 7.7e-25 86.4 91.9 7 12 0.00036 0.34 11.0 2.2 2 26 461 485 461 486 0.89 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZFP37-201 - 630 7.7e-25 86.4 91.9 8 12 3.5e-05 0.033 14.2 3.1 2 24 489 511 489 514 0.95 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZFP37-201 - 630 7.7e-25 86.4 91.9 9 12 0.00014 0.13 12.3 0.6 2 24 517 539 517 542 0.91 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZFP37-201 - 630 7.7e-25 86.4 91.9 10 12 0.00076 0.71 9.9 1.2 2 24 545 567 545 570 0.78 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZFP37-201 - 630 7.7e-25 86.4 91.9 11 12 0.0037 3.5 7.7 0.3 2 12 573 583 573 595 0.92 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZFP37-201 - 630 7.7e-25 86.4 91.9 12 12 4.3e-06 0.0041 17.1 1.9 2 25 601 624 601 625 0.96 C2H2-type zinc finger KRAB PF01352.27 42 ZFP37-201 - 630 1.2e-11 44.0 0.1 1 1 3.2e-14 3e-11 42.8 0.1 13 42 43 72 41 72 0.95 KRAB box Zn-ribbon_8 PF09723.10 40 ZFP37-201 - 630 5.1e-10 39.3 70.6 1 12 2.7 2.5e+03 -1.3 0.2 12 35 227 248 224 253 0.63 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZFP37-201 - 630 5.1e-10 39.3 70.6 2 12 0.014 13 6.0 0.1 6 19 293 306 292 315 0.80 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZFP37-201 - 630 5.1e-10 39.3 70.6 3 12 0.00043 0.41 10.8 2.1 6 34 321 356 320 361 0.90 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZFP37-201 - 630 5.1e-10 39.3 70.6 4 12 0.0001 0.098 12.8 5.2 6 35 377 413 376 417 0.82 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZFP37-201 - 630 5.1e-10 39.3 70.6 5 12 0.0083 7.8 6.7 0.8 6 16 405 415 404 425 0.86 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZFP37-201 - 630 5.1e-10 39.3 70.6 6 12 0.00027 0.26 11.4 5.2 6 38 433 472 432 474 0.86 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZFP37-201 - 630 5.1e-10 39.3 70.6 7 12 0.00028 0.26 11.4 4.9 6 34 461 496 460 500 0.88 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZFP37-201 - 630 5.1e-10 39.3 70.6 8 12 0.011 10 6.4 0.4 6 15 489 498 488 507 0.87 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZFP37-201 - 630 5.1e-10 39.3 70.6 9 12 0.0004 0.38 10.9 5.3 6 35 517 553 516 557 0.88 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZFP37-201 - 630 5.1e-10 39.3 70.6 10 12 0.0007 0.66 10.1 6.1 6 34 545 580 544 588 0.90 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZFP37-201 - 630 5.1e-10 39.3 70.6 11 12 0.00068 0.64 10.2 6.8 6 36 573 610 572 613 0.86 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZFP37-201 - 630 5.1e-10 39.3 70.6 12 12 0.0021 2 8.6 0.6 6 19 601 614 599 623 0.82 Zinc ribbon domain zf-C2H2_jaz PF12171.8 27 ZFP37-201 - 630 4.4e-07 30.0 82.0 1 13 9.6 9.1e+03 -2.9 2.4 13 25 160 172 159 172 0.84 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZFP37-201 - 630 4.4e-07 30.0 82.0 2 13 2 1.9e+03 -0.7 0.1 2 21 293 312 292 313 0.83 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZFP37-201 - 630 4.4e-07 30.0 82.0 3 13 0.23 2.2e+02 2.3 0.3 2 24 321 343 320 343 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZFP37-201 - 630 4.4e-07 30.0 82.0 4 13 0.84 8e+02 0.5 0.2 2 21 349 368 348 369 0.77 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZFP37-201 - 630 4.4e-07 30.0 82.0 5 13 1.8e-05 0.017 15.4 0.3 2 24 377 399 376 399 0.95 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZFP37-201 - 630 4.4e-07 30.0 82.0 6 13 0.00086 0.81 10.0 0.3 2 24 405 427 404 427 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZFP37-201 - 630 4.4e-07 30.0 82.0 7 13 0.0037 3.5 8.0 0.1 2 22 433 453 432 453 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZFP37-201 - 630 4.4e-07 30.0 82.0 8 13 0.0067 6.4 7.2 1.0 2 24 461 483 460 485 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZFP37-201 - 630 4.4e-07 30.0 82.0 9 13 0.0023 2.2 8.7 0.4 2 24 489 511 488 511 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZFP37-201 - 630 4.4e-07 30.0 82.0 10 13 0.018 17 5.8 0.0 2 22 517 537 516 537 0.90 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZFP37-201 - 630 4.4e-07 30.0 82.0 11 13 0.053 50 4.3 0.6 2 24 545 567 544 567 0.91 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZFP37-201 - 630 4.4e-07 30.0 82.0 12 13 0.00083 0.78 10.1 0.7 2 24 573 595 572 595 0.95 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZFP37-201 - 630 4.4e-07 30.0 82.0 13 13 0.00017 0.16 12.3 2.2 2 24 601 623 600 629 0.90 Zinc-finger double-stranded RNA-binding # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFP37-201.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFP37-201.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFP37-201.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFP37-201.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFP37-201.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:58:42 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZFP37-202 - 645 1.1e-97 316.5 98.0 1 13 0.031 28 5.4 3.3 13 23 306 316 272 319 0.83 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZFP37-202 - 645 1.1e-97 316.5 98.0 2 13 1.1e-09 1e-06 28.9 0.0 2 25 323 346 322 347 0.90 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZFP37-202 - 645 1.1e-97 316.5 98.0 3 13 6.2e-10 5.6e-07 29.7 2.4 1 24 350 373 350 375 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZFP37-202 - 645 1.1e-97 316.5 98.0 4 13 9.2e-12 8.2e-09 35.5 0.7 1 26 378 403 378 403 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZFP37-202 - 645 1.1e-97 316.5 98.0 5 13 7.9e-12 7.1e-09 35.7 0.8 1 25 406 430 406 431 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZFP37-202 - 645 1.1e-97 316.5 98.0 6 13 1.7e-10 1.6e-07 31.5 0.4 1 26 434 459 434 459 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZFP37-202 - 645 1.1e-97 316.5 98.0 7 13 6e-13 5.4e-10 39.2 0.7 1 25 462 486 462 487 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZFP37-202 - 645 1.1e-97 316.5 98.0 8 13 1.5e-09 1.4e-06 28.5 3.6 4 26 493 515 490 515 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZFP37-202 - 645 1.1e-97 316.5 98.0 9 13 1.6e-12 1.5e-09 37.9 0.5 1 26 518 543 518 543 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZFP37-202 - 645 1.1e-97 316.5 98.0 10 13 2.2e-12 2e-09 37.4 0.2 1 25 546 570 546 571 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZFP37-202 - 645 1.1e-97 316.5 98.0 11 13 1.1e-10 9.6e-08 32.1 0.8 2 25 575 598 574 599 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZFP37-202 - 645 1.1e-97 316.5 98.0 12 13 1.1e-11 1e-08 35.2 0.4 2 26 603 627 602 627 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZFP37-202 - 645 1.1e-97 316.5 98.0 13 13 0.23 2.1e+02 2.6 0.6 1 15 630 644 630 645 0.85 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZFP37-202 - 645 7e-70 227.8 98.7 1 12 2e-06 0.0018 18.6 0.5 1 23 308 330 308 330 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZFP37-202 - 645 7e-70 227.8 98.7 2 12 1.6e-09 1.4e-06 28.4 0.6 1 23 336 358 336 358 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZFP37-202 - 645 7e-70 227.8 98.7 3 12 0.065 59 4.4 2.5 1 23 364 386 364 386 0.94 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZFP37-202 - 645 7e-70 227.8 98.7 4 12 8.8e-09 7.9e-06 26.0 1.2 1 23 392 414 392 414 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZFP37-202 - 645 7e-70 227.8 98.7 5 12 3.8e-09 3.4e-06 27.2 1.3 1 23 420 442 420 442 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZFP37-202 - 645 7e-70 227.8 98.7 6 12 2.9e-10 2.6e-07 30.7 0.9 1 23 448 470 448 470 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZFP37-202 - 645 7e-70 227.8 98.7 7 12 2.5e-09 2.2e-06 27.8 1.5 1 23 476 498 476 498 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZFP37-202 - 645 7e-70 227.8 98.7 8 12 6.2e-09 5.6e-06 26.5 2.7 1 23 504 526 504 526 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZFP37-202 - 645 7e-70 227.8 98.7 9 12 2.5e-07 0.00022 21.5 0.2 1 23 532 554 532 554 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZFP37-202 - 645 7e-70 227.8 98.7 10 12 3e-10 2.7e-07 30.7 1.2 1 23 560 582 560 582 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZFP37-202 - 645 7e-70 227.8 98.7 11 12 3.7e-08 3.3e-05 24.1 0.2 1 23 588 610 588 610 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZFP37-202 - 645 7e-70 227.8 98.7 12 12 3.4e-09 3e-06 27.4 0.8 1 23 616 638 616 638 0.99 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZFP37-202 - 645 2.6e-37 124.3 93.9 1 12 0.00011 0.098 13.6 0.5 1 23 308 330 308 331 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZFP37-202 - 645 2.6e-37 124.3 93.9 2 12 2.8e-05 0.025 15.4 0.8 1 23 336 358 336 359 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZFP37-202 - 645 2.6e-37 124.3 93.9 3 12 0.011 10 7.3 1.7 1 23 364 386 364 387 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZFP37-202 - 645 2.6e-37 124.3 93.9 4 12 2.3e-05 0.021 15.7 1.1 1 23 392 414 392 415 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZFP37-202 - 645 2.6e-37 124.3 93.9 5 12 2.4e-06 0.0021 18.7 1.0 1 23 420 442 420 443 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZFP37-202 - 645 2.6e-37 124.3 93.9 6 12 2.4e-06 0.0021 18.7 0.7 1 23 448 470 448 471 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZFP37-202 - 645 2.6e-37 124.3 93.9 7 12 1.6e-05 0.014 16.2 1.3 1 23 476 498 476 499 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZFP37-202 - 645 2.6e-37 124.3 93.9 8 12 2.2e-05 0.02 15.7 1.7 1 23 504 526 504 527 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZFP37-202 - 645 2.6e-37 124.3 93.9 9 12 1.5e-05 0.013 16.2 0.2 1 23 532 554 532 555 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZFP37-202 - 645 2.6e-37 124.3 93.9 10 12 4.4e-06 0.0039 17.9 1.1 1 23 560 582 560 583 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZFP37-202 - 645 2.6e-37 124.3 93.9 11 12 0.00021 0.19 12.7 0.3 1 23 588 610 588 611 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZFP37-202 - 645 2.6e-37 124.3 93.9 12 12 5.3e-07 0.00047 20.8 0.7 1 23 616 638 616 639 0.96 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZFP37-202 - 645 1.1e-24 85.9 91.9 1 12 0.00035 0.31 11.1 0.7 2 24 308 330 308 333 0.90 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZFP37-202 - 645 1.1e-24 85.9 91.9 2 12 0.081 73 3.5 0.3 2 11 336 345 336 358 0.88 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZFP37-202 - 645 1.1e-24 85.9 91.9 3 12 0.92 8.2e+02 0.2 1.5 2 21 364 383 364 388 0.71 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZFP37-202 - 645 1.1e-24 85.9 91.9 4 12 4.8e-05 0.043 13.8 1.3 2 24 392 414 392 417 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZFP37-202 - 645 1.1e-24 85.9 91.9 5 12 1.7e-07 0.00015 21.6 1.5 2 24 420 442 420 445 0.95 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZFP37-202 - 645 1.1e-24 85.9 91.9 6 12 5.2e-07 0.00046 20.1 1.2 2 24 448 470 448 473 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZFP37-202 - 645 1.1e-24 85.9 91.9 7 12 0.00039 0.35 10.9 2.2 2 26 476 500 476 501 0.89 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZFP37-202 - 645 1.1e-24 85.9 91.9 8 12 3.7e-05 0.034 14.2 3.1 2 24 504 526 504 529 0.95 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZFP37-202 - 645 1.1e-24 85.9 91.9 9 12 0.00015 0.13 12.3 0.6 2 24 532 554 532 557 0.91 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZFP37-202 - 645 1.1e-24 85.9 91.9 10 12 0.00082 0.73 9.9 1.2 2 24 560 582 560 585 0.78 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZFP37-202 - 645 1.1e-24 85.9 91.9 11 12 0.004 3.6 7.7 0.3 2 12 588 598 588 610 0.92 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZFP37-202 - 645 1.1e-24 85.9 91.9 12 12 4.7e-06 0.0042 17.1 1.9 2 25 616 639 616 640 0.96 C2H2-type zinc finger KRAB PF01352.27 42 ZFP37-202 - 645 3.3e-19 68.3 0.1 1 1 8.2e-22 7.3e-19 67.1 0.1 1 42 46 87 46 87 0.98 KRAB box Zn-ribbon_8 PF09723.10 40 ZFP37-202 - 645 5.7e-10 39.1 70.4 1 12 2.9 2.6e+03 -1.4 0.2 12 35 242 263 239 268 0.63 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZFP37-202 - 645 5.7e-10 39.1 70.4 2 12 0.015 13 6.0 0.1 6 19 308 321 307 330 0.80 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZFP37-202 - 645 5.7e-10 39.1 70.4 3 12 0.00047 0.42 10.8 2.1 6 34 336 371 335 376 0.90 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZFP37-202 - 645 5.7e-10 39.1 70.4 4 12 0.00011 0.1 12.7 5.2 6 35 392 428 391 432 0.82 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZFP37-202 - 645 5.7e-10 39.1 70.4 5 12 0.009 8.1 6.7 0.8 6 16 420 430 419 440 0.86 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZFP37-202 - 645 5.7e-10 39.1 70.4 6 12 0.00031 0.28 11.3 5.3 6 38 448 487 447 489 0.86 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZFP37-202 - 645 5.7e-10 39.1 70.4 7 12 0.00028 0.25 11.5 4.8 6 34 476 511 475 515 0.88 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZFP37-202 - 645 5.7e-10 39.1 70.4 8 12 0.011 10 6.3 0.4 6 15 504 513 503 522 0.87 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZFP37-202 - 645 5.7e-10 39.1 70.4 9 12 0.00038 0.34 11.1 5.2 6 35 532 568 531 573 0.88 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZFP37-202 - 645 5.7e-10 39.1 70.4 10 12 0.0012 1.1 9.5 6.6 6 34 560 595 559 602 0.90 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZFP37-202 - 645 5.7e-10 39.1 70.4 11 12 0.00064 0.57 10.3 6.6 6 36 588 625 587 628 0.86 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZFP37-202 - 645 5.7e-10 39.1 70.4 12 12 0.0023 2 8.6 0.6 6 19 616 629 615 638 0.81 Zinc ribbon domain zf-C2H2_jaz PF12171.8 27 ZFP37-202 - 645 6.1e-07 29.6 82.0 1 12 2.1 1.9e+03 -0.7 0.1 2 21 308 327 307 328 0.83 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZFP37-202 - 645 6.1e-07 29.6 82.0 2 12 0.25 2.3e+02 2.3 0.3 2 24 336 358 335 358 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZFP37-202 - 645 6.1e-07 29.6 82.0 3 12 0.91 8.2e+02 0.5 0.2 2 21 364 383 363 384 0.77 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZFP37-202 - 645 6.1e-07 29.6 82.0 4 12 2e-05 0.018 15.3 0.3 2 24 392 414 391 414 0.95 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZFP37-202 - 645 6.1e-07 29.6 82.0 5 12 0.00093 0.83 10.0 0.3 2 24 420 442 419 442 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZFP37-202 - 645 6.1e-07 29.6 82.0 6 12 0.004 3.6 8.0 0.1 2 22 448 468 447 468 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZFP37-202 - 645 6.1e-07 29.6 82.0 7 12 0.0073 6.5 7.2 1.0 2 24 476 498 475 500 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZFP37-202 - 645 6.1e-07 29.6 82.0 8 12 0.0025 2.3 8.6 0.4 2 24 504 526 503 526 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZFP37-202 - 645 6.1e-07 29.6 82.0 9 12 0.02 18 5.8 0.0 2 22 532 552 531 552 0.90 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZFP37-202 - 645 6.1e-07 29.6 82.0 10 12 0.057 51 4.3 0.6 2 24 560 582 559 582 0.91 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZFP37-202 - 645 6.1e-07 29.6 82.0 11 12 0.0009 0.81 10.1 0.7 2 24 588 610 587 610 0.95 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZFP37-202 - 645 6.1e-07 29.6 82.0 12 12 0.00018 0.16 12.3 2.2 2 24 616 638 615 644 0.90 Zinc-finger double-stranded RNA-binding # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFP37-202.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFP37-202.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFP37-202.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFP37-202.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFP37-202.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:58:43 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZFP37-203 - 631 8.5e-98 316.8 98.1 1 13 0.031 29 5.3 3.4 13 23 292 302 258 305 0.83 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZFP37-203 - 631 8.5e-98 316.8 98.1 2 13 1e-09 9.8e-07 28.9 0.0 2 25 309 332 308 333 0.90 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZFP37-203 - 631 8.5e-98 316.8 98.1 3 13 5.8e-10 5.5e-07 29.7 2.4 1 24 336 359 336 361 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZFP37-203 - 631 8.5e-98 316.8 98.1 4 13 8.5e-12 8e-09 35.5 0.7 1 26 364 389 364 389 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZFP37-203 - 631 8.5e-98 316.8 98.1 5 13 7.3e-12 6.9e-09 35.7 0.8 1 25 392 416 392 417 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZFP37-203 - 631 8.5e-98 316.8 98.1 6 13 1.6e-10 1.5e-07 31.5 0.4 1 26 420 445 420 445 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZFP37-203 - 631 8.5e-98 316.8 98.1 7 13 5.6e-13 5.3e-10 39.3 0.7 1 25 448 472 448 473 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZFP37-203 - 631 8.5e-98 316.8 98.1 8 13 1.4e-09 1.3e-06 28.5 3.6 4 26 479 501 476 501 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZFP37-203 - 631 8.5e-98 316.8 98.1 9 13 1.5e-12 1.4e-09 37.9 0.5 1 26 504 529 504 529 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZFP37-203 - 631 8.5e-98 316.8 98.1 10 13 2.1e-12 2e-09 37.5 0.2 1 25 532 556 532 557 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZFP37-203 - 631 8.5e-98 316.8 98.1 11 13 9.9e-11 9.3e-08 32.2 0.8 2 25 561 584 560 585 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZFP37-203 - 631 8.5e-98 316.8 98.1 12 13 1e-11 9.8e-09 35.3 0.4 2 26 589 613 588 613 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZFP37-203 - 631 8.5e-98 316.8 98.1 13 13 0.21 2e+02 2.7 0.6 1 15 616 630 616 631 0.85 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZFP37-203 - 631 5.3e-70 228.2 98.7 1 12 1.8e-06 0.0017 18.7 0.5 1 23 294 316 294 316 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZFP37-203 - 631 5.3e-70 228.2 98.7 2 12 1.5e-09 1.4e-06 28.4 0.6 1 23 322 344 322 344 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZFP37-203 - 631 5.3e-70 228.2 98.7 3 12 0.061 57 4.4 2.5 1 23 350 372 350 372 0.94 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZFP37-203 - 631 5.3e-70 228.2 98.7 4 12 8.2e-09 7.7e-06 26.1 1.2 1 23 378 400 378 400 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZFP37-203 - 631 5.3e-70 228.2 98.7 5 12 3.6e-09 3.4e-06 27.2 1.3 1 23 406 428 406 428 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZFP37-203 - 631 5.3e-70 228.2 98.7 6 12 2.7e-10 2.5e-07 30.8 0.9 1 23 434 456 434 456 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZFP37-203 - 631 5.3e-70 228.2 98.7 7 12 2.3e-09 2.2e-06 27.8 1.5 1 23 462 484 462 484 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZFP37-203 - 631 5.3e-70 228.2 98.7 8 12 5.7e-09 5.4e-06 26.6 2.7 1 23 490 512 490 512 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZFP37-203 - 631 5.3e-70 228.2 98.7 9 12 2.3e-07 0.00022 21.5 0.2 1 23 518 540 518 540 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZFP37-203 - 631 5.3e-70 228.2 98.7 10 12 2.8e-10 2.6e-07 30.7 1.2 1 23 546 568 546 568 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZFP37-203 - 631 5.3e-70 228.2 98.7 11 12 3.4e-08 3.2e-05 24.1 0.2 1 23 574 596 574 596 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZFP37-203 - 631 5.3e-70 228.2 98.7 12 12 3.1e-09 2.9e-06 27.4 0.8 1 23 602 624 602 624 0.99 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZFP37-203 - 631 1.9e-37 124.7 93.9 1 12 0.0001 0.095 13.6 0.5 1 23 294 316 294 317 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZFP37-203 - 631 1.9e-37 124.7 93.9 2 12 2.6e-05 0.025 15.4 0.8 1 23 322 344 322 345 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZFP37-203 - 631 1.9e-37 124.7 93.9 3 12 0.01 9.7 7.3 1.7 1 23 350 372 350 373 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZFP37-203 - 631 1.9e-37 124.7 93.9 4 12 2.1e-05 0.02 15.7 1.1 1 23 378 400 378 401 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZFP37-203 - 631 1.9e-37 124.7 93.9 5 12 2.2e-06 0.0021 18.8 1.0 1 23 406 428 406 429 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZFP37-203 - 631 1.9e-37 124.7 93.9 6 12 2.2e-06 0.0021 18.8 0.7 1 23 434 456 434 457 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZFP37-203 - 631 1.9e-37 124.7 93.9 7 12 1.5e-05 0.014 16.2 1.3 1 23 462 484 462 485 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZFP37-203 - 631 1.9e-37 124.7 93.9 8 12 2e-05 0.019 15.7 1.7 1 23 490 512 490 513 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZFP37-203 - 631 1.9e-37 124.7 93.9 9 12 1.4e-05 0.013 16.3 0.2 1 23 518 540 518 541 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZFP37-203 - 631 1.9e-37 124.7 93.9 10 12 4.1e-06 0.0038 17.9 1.1 1 23 546 568 546 569 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZFP37-203 - 631 1.9e-37 124.7 93.9 11 12 0.00019 0.18 12.7 0.3 1 23 574 596 574 597 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZFP37-203 - 631 1.9e-37 124.7 93.9 12 12 4.9e-07 0.00046 20.8 0.7 1 23 602 624 602 625 0.96 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZFP37-203 - 631 7.9e-25 86.3 91.9 1 12 0.00032 0.3 11.1 0.7 2 24 294 316 294 319 0.90 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZFP37-203 - 631 7.9e-25 86.3 91.9 2 12 0.075 71 3.6 0.3 2 11 322 331 322 344 0.88 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZFP37-203 - 631 7.9e-25 86.3 91.9 3 12 0.85 8e+02 0.2 1.5 2 21 350 369 350 374 0.71 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZFP37-203 - 631 7.9e-25 86.3 91.9 4 12 4.4e-05 0.042 13.9 1.3 2 24 378 400 378 403 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZFP37-203 - 631 7.9e-25 86.3 91.9 5 12 1.6e-07 0.00015 21.7 1.5 2 24 406 428 406 431 0.95 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZFP37-203 - 631 7.9e-25 86.3 91.9 6 12 4.8e-07 0.00045 20.1 1.2 2 24 434 456 434 459 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZFP37-203 - 631 7.9e-25 86.3 91.9 7 12 0.00036 0.34 11.0 2.2 2 26 462 486 462 487 0.89 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZFP37-203 - 631 7.9e-25 86.3 91.9 8 12 3.5e-05 0.033 14.2 3.1 2 24 490 512 490 515 0.95 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZFP37-203 - 631 7.9e-25 86.3 91.9 9 12 0.00014 0.13 12.3 0.6 2 24 518 540 518 543 0.91 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZFP37-203 - 631 7.9e-25 86.3 91.9 10 12 0.00076 0.72 9.9 1.2 2 24 546 568 546 571 0.78 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZFP37-203 - 631 7.9e-25 86.3 91.9 11 12 0.0037 3.5 7.7 0.3 2 12 574 584 574 596 0.92 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZFP37-203 - 631 7.9e-25 86.3 91.9 12 12 4.3e-06 0.0041 17.1 1.9 2 25 602 625 602 626 0.96 C2H2-type zinc finger KRAB PF01352.27 42 ZFP37-203 - 631 1.5e-11 43.7 0.2 1 1 3.7e-14 3.5e-11 42.6 0.2 14 42 45 73 43 73 0.96 KRAB box Zn-ribbon_8 PF09723.10 40 ZFP37-203 - 631 5.2e-10 39.3 70.6 1 12 2.7 2.5e+03 -1.3 0.2 12 35 228 249 225 254 0.63 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZFP37-203 - 631 5.2e-10 39.3 70.6 2 12 0.014 13 6.0 0.1 6 19 294 307 293 316 0.80 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZFP37-203 - 631 5.2e-10 39.3 70.6 3 12 0.00043 0.41 10.8 2.1 6 34 322 357 321 362 0.90 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZFP37-203 - 631 5.2e-10 39.3 70.6 4 12 0.0001 0.098 12.8 5.2 6 35 378 414 377 418 0.82 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZFP37-203 - 631 5.2e-10 39.3 70.6 5 12 0.0083 7.8 6.7 0.8 6 16 406 416 405 426 0.86 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZFP37-203 - 631 5.2e-10 39.3 70.6 6 12 0.00027 0.26 11.4 5.2 6 38 434 473 433 475 0.86 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZFP37-203 - 631 5.2e-10 39.3 70.6 7 12 0.00028 0.26 11.4 4.9 6 34 462 497 461 501 0.88 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZFP37-203 - 631 5.2e-10 39.3 70.6 8 12 0.011 10 6.4 0.4 6 15 490 499 489 508 0.87 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZFP37-203 - 631 5.2e-10 39.3 70.6 9 12 0.0004 0.38 10.9 5.3 6 35 518 554 517 558 0.88 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZFP37-203 - 631 5.2e-10 39.3 70.6 10 12 0.0007 0.66 10.1 6.1 6 34 546 581 545 589 0.90 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZFP37-203 - 631 5.2e-10 39.3 70.6 11 12 0.00068 0.64 10.2 6.8 6 36 574 611 573 614 0.86 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZFP37-203 - 631 5.2e-10 39.3 70.6 12 12 0.0021 2 8.6 0.6 6 19 602 615 600 624 0.82 Zinc ribbon domain zf-C2H2_jaz PF12171.8 27 ZFP37-203 - 631 4.5e-07 30.0 82.0 1 13 9.7 9.1e+03 -2.9 2.4 13 25 161 173 160 173 0.84 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZFP37-203 - 631 4.5e-07 30.0 82.0 2 13 2 1.9e+03 -0.7 0.1 2 21 294 313 293 314 0.83 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZFP37-203 - 631 4.5e-07 30.0 82.0 3 13 0.23 2.2e+02 2.3 0.3 2 24 322 344 321 344 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZFP37-203 - 631 4.5e-07 30.0 82.0 4 13 0.85 8e+02 0.5 0.2 2 21 350 369 349 370 0.77 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZFP37-203 - 631 4.5e-07 30.0 82.0 5 13 1.8e-05 0.017 15.4 0.3 2 24 378 400 377 400 0.95 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZFP37-203 - 631 4.5e-07 30.0 82.0 6 13 0.00086 0.81 10.0 0.3 2 24 406 428 405 428 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZFP37-203 - 631 4.5e-07 30.0 82.0 7 13 0.0037 3.5 8.0 0.1 2 22 434 454 433 454 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZFP37-203 - 631 4.5e-07 30.0 82.0 8 13 0.0067 6.4 7.2 1.0 2 24 462 484 461 486 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZFP37-203 - 631 4.5e-07 30.0 82.0 9 13 0.0024 2.2 8.7 0.4 2 24 490 512 489 512 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZFP37-203 - 631 4.5e-07 30.0 82.0 10 13 0.018 17 5.8 0.0 2 22 518 538 517 538 0.90 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZFP37-203 - 631 4.5e-07 30.0 82.0 11 13 0.053 50 4.3 0.6 2 24 546 568 545 568 0.91 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZFP37-203 - 631 4.5e-07 30.0 82.0 12 13 0.00083 0.79 10.1 0.7 2 24 574 596 573 596 0.95 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZFP37-203 - 631 4.5e-07 30.0 82.0 13 13 0.00017 0.16 12.3 2.2 2 24 602 624 601 630 0.90 Zinc-finger double-stranded RNA-binding # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFP37-203.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFP37-203.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFP37-203.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFP37-203.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFP37-203.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:58:43 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZFP41-201 - 199 3.5e-28 96.7 39.3 1 5 0.00011 0.073 13.5 0.7 12 26 85 99 83 99 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZFP41-201 - 199 3.5e-28 96.7 39.3 2 5 5.7e-11 3.8e-08 33.4 2.3 4 26 105 127 104 127 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZFP41-201 - 199 3.5e-28 96.7 39.3 3 5 8.2e-11 5.4e-08 32.9 2.7 3 25 132 154 130 155 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZFP41-201 - 199 3.5e-28 96.7 39.3 4 5 7.8e-12 5.2e-09 36.1 2.7 1 25 158 182 158 183 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZFP41-201 - 199 3.5e-28 96.7 39.3 5 5 0.15 1e+02 3.6 1.8 2 14 187 199 187 199 0.91 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZFP41-201 - 199 4.9e-19 67.6 35.7 1 4 8.9e-06 0.0059 17.0 3.8 1 23 88 110 88 110 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZFP41-201 - 199 4.9e-19 67.6 35.7 2 4 1.8e-08 1.2e-05 25.5 2.8 1 23 116 138 116 138 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZFP41-201 - 199 4.9e-19 67.6 35.7 3 4 1.3e-06 0.00085 19.7 1.6 1 23 144 166 144 166 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZFP41-201 - 199 4.9e-19 67.6 35.7 4 4 7.3e-08 4.9e-05 23.6 4.5 1 23 172 194 172 194 0.99 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZFP41-201 - 199 4.5e-13 48.8 32.4 1 4 0.00028 0.19 12.7 2.6 1 23 88 110 88 111 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZFP41-201 - 199 4.5e-13 48.8 32.4 2 4 7.9e-05 0.053 14.4 2.2 1 23 116 138 116 139 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZFP41-201 - 199 4.5e-13 48.8 32.4 3 4 1.3e-06 0.00085 20.0 1.5 1 23 144 166 144 167 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZFP41-201 - 199 4.5e-13 48.8 32.4 4 4 1.7e-06 0.0011 19.6 3.4 1 23 172 194 172 195 0.96 C2H2-type zinc finger # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFP41-201.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFP41-201.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFP41-201.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFP41-201.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFP41-201.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:58:44 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFP41-202.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFP41-202.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFP41-202.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFP41-202.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFP41-202.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:58:44 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZFP41-203 - 199 3.5e-28 96.7 39.3 1 5 0.00011 0.073 13.5 0.7 12 26 85 99 83 99 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZFP41-203 - 199 3.5e-28 96.7 39.3 2 5 5.7e-11 3.8e-08 33.4 2.3 4 26 105 127 104 127 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZFP41-203 - 199 3.5e-28 96.7 39.3 3 5 8.2e-11 5.4e-08 32.9 2.7 3 25 132 154 130 155 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZFP41-203 - 199 3.5e-28 96.7 39.3 4 5 7.8e-12 5.2e-09 36.1 2.7 1 25 158 182 158 183 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZFP41-203 - 199 3.5e-28 96.7 39.3 5 5 0.15 1e+02 3.6 1.8 2 14 187 199 187 199 0.91 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZFP41-203 - 199 4.9e-19 67.6 35.7 1 4 8.9e-06 0.0059 17.0 3.8 1 23 88 110 88 110 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZFP41-203 - 199 4.9e-19 67.6 35.7 2 4 1.8e-08 1.2e-05 25.5 2.8 1 23 116 138 116 138 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZFP41-203 - 199 4.9e-19 67.6 35.7 3 4 1.3e-06 0.00085 19.7 1.6 1 23 144 166 144 166 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZFP41-203 - 199 4.9e-19 67.6 35.7 4 4 7.3e-08 4.9e-05 23.6 4.5 1 23 172 194 172 194 0.99 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZFP41-203 - 199 4.5e-13 48.8 32.4 1 4 0.00028 0.19 12.7 2.6 1 23 88 110 88 111 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZFP41-203 - 199 4.5e-13 48.8 32.4 2 4 7.9e-05 0.053 14.4 2.2 1 23 116 138 116 139 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZFP41-203 - 199 4.5e-13 48.8 32.4 3 4 1.3e-06 0.00085 20.0 1.5 1 23 144 166 144 167 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZFP41-203 - 199 4.5e-13 48.8 32.4 4 4 1.7e-06 0.0011 19.6 3.4 1 23 172 194 172 195 0.96 C2H2-type zinc finger # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFP41-203.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFP41-203.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFP41-203.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFP41-203.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFP41-203.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:58:44 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFP41-204.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFP41-204.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFP41-204.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFP41-204.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFP41-204.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:58:45 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-C2H2 PF00096.26 23 ZFP42-201 - 310 9.5e-17 60.4 17.4 1 4 0.00012 0.14 12.7 0.1 3 23 190 212 188 212 0.95 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZFP42-201 - 310 9.5e-17 60.4 17.4 2 4 1.7e-06 0.0019 18.6 0.6 1 23 217 239 217 239 0.95 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZFP42-201 - 310 9.5e-17 60.4 17.4 3 4 7.8e-06 0.0087 16.5 0.9 1 23 245 269 245 269 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZFP42-201 - 310 9.5e-17 60.4 17.4 4 4 7.9e-08 8.9e-05 22.7 0.3 1 23 275 299 275 299 0.98 Zinc finger, C2H2 type zf-H2C2_2 PF13465.6 26 ZFP42-201 - 310 4.9e-16 58.4 16.0 1 4 3.3e-05 0.037 14.5 0.1 1 25 204 227 204 228 0.90 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZFP42-201 - 310 4.9e-16 58.4 16.0 2 4 1.2e-08 1.3e-05 25.4 2.0 2 25 232 257 231 257 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZFP42-201 - 310 4.9e-16 58.4 16.0 3 4 7.9e-09 8.9e-06 25.9 0.2 1 24 261 286 261 288 0.89 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZFP42-201 - 310 4.9e-16 58.4 16.0 4 4 1.3 1.4e+03 -0.0 0.1 1 9 291 299 291 304 0.85 Zinc-finger double domain zf-C2H2_4 PF13894.6 24 ZFP42-201 - 310 5.9e-12 45.4 15.7 1 4 0.0012 1.4 10.0 0.1 2 23 189 212 188 213 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZFP42-201 - 310 5.9e-12 45.4 15.7 2 4 4.8e-05 0.054 14.4 1.1 1 23 217 239 217 240 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZFP42-201 - 310 5.9e-12 45.4 15.7 3 4 7.8e-05 0.087 13.7 0.6 1 23 245 269 245 270 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZFP42-201 - 310 5.9e-12 45.4 15.7 4 4 1.9e-05 0.021 15.6 0.2 1 23 275 299 275 300 0.96 C2H2-type zinc finger # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFP42-201.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFP42-201.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFP42-201.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFP42-201.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFP42-201.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:58:45 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-C2H2 PF00096.26 23 ZFP42-202 - 310 9.5e-17 60.4 17.4 1 4 0.00012 0.14 12.7 0.1 3 23 190 212 188 212 0.95 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZFP42-202 - 310 9.5e-17 60.4 17.4 2 4 1.7e-06 0.0019 18.6 0.6 1 23 217 239 217 239 0.95 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZFP42-202 - 310 9.5e-17 60.4 17.4 3 4 7.8e-06 0.0087 16.5 0.9 1 23 245 269 245 269 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZFP42-202 - 310 9.5e-17 60.4 17.4 4 4 7.9e-08 8.9e-05 22.7 0.3 1 23 275 299 275 299 0.98 Zinc finger, C2H2 type zf-H2C2_2 PF13465.6 26 ZFP42-202 - 310 4.9e-16 58.4 16.0 1 4 3.3e-05 0.037 14.5 0.1 1 25 204 227 204 228 0.90 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZFP42-202 - 310 4.9e-16 58.4 16.0 2 4 1.2e-08 1.3e-05 25.4 2.0 2 25 232 257 231 257 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZFP42-202 - 310 4.9e-16 58.4 16.0 3 4 7.9e-09 8.9e-06 25.9 0.2 1 24 261 286 261 288 0.89 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZFP42-202 - 310 4.9e-16 58.4 16.0 4 4 1.3 1.4e+03 -0.0 0.1 1 9 291 299 291 304 0.85 Zinc-finger double domain zf-C2H2_4 PF13894.6 24 ZFP42-202 - 310 5.9e-12 45.4 15.7 1 4 0.0012 1.4 10.0 0.1 2 23 189 212 188 213 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZFP42-202 - 310 5.9e-12 45.4 15.7 2 4 4.8e-05 0.054 14.4 1.1 1 23 217 239 217 240 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZFP42-202 - 310 5.9e-12 45.4 15.7 3 4 7.8e-05 0.087 13.7 0.6 1 23 245 269 245 270 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZFP42-202 - 310 5.9e-12 45.4 15.7 4 4 1.9e-05 0.021 15.6 0.2 1 23 275 299 275 300 0.96 C2H2-type zinc finger # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFP42-202.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFP42-202.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFP42-202.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFP42-202.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFP42-202.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:58:46 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-C2H2 PF00096.26 23 ZFP42-203 - 310 9.5e-17 60.4 17.4 1 4 0.00012 0.14 12.7 0.1 3 23 190 212 188 212 0.95 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZFP42-203 - 310 9.5e-17 60.4 17.4 2 4 1.7e-06 0.0019 18.6 0.6 1 23 217 239 217 239 0.95 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZFP42-203 - 310 9.5e-17 60.4 17.4 3 4 7.8e-06 0.0087 16.5 0.9 1 23 245 269 245 269 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZFP42-203 - 310 9.5e-17 60.4 17.4 4 4 7.9e-08 8.9e-05 22.7 0.3 1 23 275 299 275 299 0.98 Zinc finger, C2H2 type zf-H2C2_2 PF13465.6 26 ZFP42-203 - 310 4.9e-16 58.4 16.0 1 4 3.3e-05 0.037 14.5 0.1 1 25 204 227 204 228 0.90 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZFP42-203 - 310 4.9e-16 58.4 16.0 2 4 1.2e-08 1.3e-05 25.4 2.0 2 25 232 257 231 257 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZFP42-203 - 310 4.9e-16 58.4 16.0 3 4 7.9e-09 8.9e-06 25.9 0.2 1 24 261 286 261 288 0.89 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZFP42-203 - 310 4.9e-16 58.4 16.0 4 4 1.3 1.4e+03 -0.0 0.1 1 9 291 299 291 304 0.85 Zinc-finger double domain zf-C2H2_4 PF13894.6 24 ZFP42-203 - 310 5.9e-12 45.4 15.7 1 4 0.0012 1.4 10.0 0.1 2 23 189 212 188 213 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZFP42-203 - 310 5.9e-12 45.4 15.7 2 4 4.8e-05 0.054 14.4 1.1 1 23 217 239 217 240 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZFP42-203 - 310 5.9e-12 45.4 15.7 3 4 7.8e-05 0.087 13.7 0.6 1 23 245 269 245 270 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZFP42-203 - 310 5.9e-12 45.4 15.7 4 4 1.9e-05 0.021 15.6 0.2 1 23 275 299 275 300 0.96 C2H2-type zinc finger # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFP42-203.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFP42-203.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFP42-203.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFP42-203.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFP42-203.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:58:46 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFP57-201.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFP57-201.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFP57-201.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFP57-201.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFP57-201.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:58:46 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-C2H2 PF00096.26 23 ZFP57-202 - 516 1.8e-24 84.8 68.0 1 7 9e-06 0.016 15.6 6.2 1 23 155 177 155 177 0.95 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZFP57-202 - 516 1.8e-24 84.8 68.0 2 7 1.5e-05 0.027 14.9 2.2 3 23 185 205 184 205 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZFP57-202 - 516 1.8e-24 84.8 68.0 3 7 7.8e-06 0.014 15.8 5.0 1 23 211 233 211 233 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZFP57-202 - 516 1.8e-24 84.8 68.0 4 7 1.7e-09 3e-06 27.4 2.4 1 23 239 261 239 261 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZFP57-202 - 516 1.8e-24 84.8 68.0 5 7 1.3e-05 0.024 15.1 6.9 1 23 364 386 364 386 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZFP57-202 - 516 1.8e-24 84.8 68.0 6 7 9.2e-06 0.016 15.6 5.2 3 23 394 414 393 414 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZFP57-202 - 516 1.8e-24 84.8 68.0 7 7 0.00034 0.62 10.6 0.0 1 21 420 440 420 441 0.93 Zinc finger, C2H2 type KRAB PF01352.27 42 ZFP57-202 - 516 5.3e-22 77.2 1.3 1 1 6.7e-25 1.2e-21 76.0 1.3 1 41 23 63 23 63 0.98 KRAB box zf-C2H2_4 PF13894.6 24 ZFP57-202 - 516 8e-21 72.9 64.0 1 7 0.02 35 5.6 5.3 1 23 155 177 155 178 0.89 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZFP57-202 - 516 8e-21 72.9 64.0 2 7 3e-06 0.0054 17.5 1.4 3 23 185 205 183 206 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZFP57-202 - 516 8e-21 72.9 64.0 3 7 1.1e-05 0.02 15.7 4.0 1 23 211 233 211 234 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZFP57-202 - 516 8e-21 72.9 64.0 4 7 6e-07 0.0011 19.7 2.0 1 23 239 261 239 262 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZFP57-202 - 516 8e-21 72.9 64.0 5 7 3.1e-06 0.0056 17.4 6.2 1 23 364 386 364 387 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZFP57-202 - 516 8e-21 72.9 64.0 6 7 2.7e-05 0.048 14.5 4.2 2 23 393 414 392 415 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZFP57-202 - 516 8e-21 72.9 64.0 7 7 5.6e-05 0.1 13.5 0.0 1 21 420 440 420 442 0.94 C2H2-type zinc finger zf-H2C2_2 PF13465.6 26 ZFP57-202 - 516 1e-15 57.3 55.3 1 8 0.24 4.3e+02 1.6 2.7 14 25 154 165 149 166 0.88 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZFP57-202 - 516 1e-15 57.3 55.3 2 8 0.085 1.5e+02 3.0 0.6 2 25 170 193 169 194 0.76 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZFP57-202 - 516 1e-15 57.3 55.3 3 8 5.2e-10 9.3e-07 29.0 2.7 1 24 197 220 197 220 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZFP57-202 - 516 1e-15 57.3 55.3 4 8 7.1e-09 1.3e-05 25.4 1.0 1 24 225 248 225 249 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZFP57-202 - 516 1e-15 57.3 55.3 5 8 0.012 21 5.8 0.1 2 17 254 273 253 275 0.80 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZFP57-202 - 516 1e-15 57.3 55.3 6 8 0.0082 15 6.3 1.6 13 25 357 374 351 375 0.70 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZFP57-202 - 516 1e-15 57.3 55.3 7 8 0.052 93 3.7 2.8 2 25 379 402 378 403 0.85 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZFP57-202 - 516 1e-15 57.3 55.3 8 8 2.3e-05 0.042 14.3 0.1 2 24 407 429 406 431 0.93 Zinc-finger double domain # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFP57-202.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFP57-202.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFP57-202.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFP57-202.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFP57-202.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:58:47 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-C2H2 PF00096.26 23 ZFP57-203 - 536 2.4e-24 84.4 68.0 1 7 9.4e-06 0.017 15.6 6.2 1 23 175 197 175 197 0.95 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZFP57-203 - 536 2.4e-24 84.4 68.0 2 7 1.6e-05 0.028 14.9 2.2 3 23 205 225 204 225 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZFP57-203 - 536 2.4e-24 84.4 68.0 3 7 8.1e-06 0.015 15.8 5.0 1 23 231 253 231 253 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZFP57-203 - 536 2.4e-24 84.4 68.0 4 7 1.8e-09 3.2e-06 27.3 2.4 1 23 259 281 259 281 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZFP57-203 - 536 2.4e-24 84.4 68.0 5 7 1.4e-05 0.025 15.0 6.9 1 23 384 406 384 406 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZFP57-203 - 536 2.4e-24 84.4 68.0 6 7 9.6e-06 0.017 15.5 5.2 3 23 414 434 413 434 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZFP57-203 - 536 2.4e-24 84.4 68.0 7 7 0.00036 0.64 10.6 0.0 1 21 440 460 440 461 0.93 Zinc finger, C2H2 type KRAB PF01352.27 42 ZFP57-203 - 536 4.9e-22 77.3 1.3 1 1 7.1e-25 1.3e-21 76.0 1.3 1 41 43 83 43 83 0.98 KRAB box zf-C2H2_4 PF13894.6 24 ZFP57-203 - 536 1.1e-20 72.5 64.0 1 7 0.021 37 5.5 5.3 1 23 175 197 175 198 0.89 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZFP57-203 - 536 1.1e-20 72.5 64.0 2 7 3.2e-06 0.0057 17.4 1.4 3 23 205 225 203 226 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZFP57-203 - 536 1.1e-20 72.5 64.0 3 7 1.2e-05 0.021 15.6 4.0 1 23 231 253 231 254 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZFP57-203 - 536 1.1e-20 72.5 64.0 4 7 6.2e-07 0.0011 19.6 2.0 1 23 259 281 259 282 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZFP57-203 - 536 1.1e-20 72.5 64.0 5 7 3.3e-06 0.0059 17.3 6.2 1 23 384 406 384 407 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZFP57-203 - 536 1.1e-20 72.5 64.0 6 7 2.8e-05 0.051 14.4 4.2 2 23 413 434 412 435 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZFP57-203 - 536 1.1e-20 72.5 64.0 7 7 5.9e-05 0.11 13.4 0.0 1 21 440 460 440 462 0.94 C2H2-type zinc finger zf-H2C2_2 PF13465.6 26 ZFP57-203 - 536 1.5e-15 56.8 55.3 1 8 0.25 4.5e+02 1.6 2.7 14 25 174 185 169 186 0.88 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZFP57-203 - 536 1.5e-15 56.8 55.3 2 8 0.089 1.6e+02 3.0 0.6 2 25 190 213 189 214 0.76 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZFP57-203 - 536 1.5e-15 56.8 55.3 3 8 5.4e-10 9.7e-07 28.9 2.7 1 24 217 240 217 240 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZFP57-203 - 536 1.5e-15 56.8 55.3 4 8 7.4e-09 1.3e-05 25.4 1.0 1 24 245 268 245 269 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZFP57-203 - 536 1.5e-15 56.8 55.3 5 8 0.012 22 5.7 0.1 2 17 274 293 273 295 0.80 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZFP57-203 - 536 1.5e-15 56.8 55.3 6 8 0.0086 15 6.2 1.6 13 25 377 394 371 395 0.70 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZFP57-203 - 536 1.5e-15 56.8 55.3 7 8 0.054 98 3.7 2.8 2 25 399 422 398 423 0.85 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZFP57-203 - 536 1.5e-15 56.8 55.3 8 8 2.5e-05 0.044 14.2 0.1 2 24 427 449 426 451 0.93 Zinc-finger double domain # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFP57-203.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFP57-203.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFP57-203.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFP57-203.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFP57-203.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:58:47 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZFP62-201 - 867 7.6e-190 607.8 171.4 1 27 0.00029 0.37 11.3 1.5 11 26 104 119 100 119 0.90 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZFP62-201 - 867 7.6e-190 607.8 171.4 2 27 9.9e-09 1.3e-05 25.4 0.1 2 25 123 146 122 147 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZFP62-201 - 867 7.6e-190 607.8 171.4 3 27 8.8e-11 1.1e-07 31.9 1.0 1 24 150 173 150 173 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZFP62-201 - 867 7.6e-190 607.8 171.4 4 27 1e-05 0.013 15.9 1.9 2 25 179 202 178 203 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZFP62-201 - 867 7.6e-190 607.8 171.4 5 27 6.2e-11 7.9e-08 32.4 0.3 2 26 207 231 207 231 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZFP62-201 - 867 7.6e-190 607.8 171.4 6 27 2.7e-12 3.5e-09 36.7 0.2 1 26 234 259 234 259 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZFP62-201 - 867 7.6e-190 607.8 171.4 7 27 3.5e-12 4.5e-09 36.3 0.1 1 25 262 286 262 287 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZFP62-201 - 867 7.6e-190 607.8 171.4 8 27 1.1e-07 0.00014 22.1 1.0 4 25 293 314 291 315 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZFP62-201 - 867 7.6e-190 607.8 171.4 9 27 4.4e-10 5.7e-07 29.7 0.2 4 26 321 343 319 343 0.90 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZFP62-201 - 867 7.6e-190 607.8 171.4 10 27 2.3e-11 2.9e-08 33.7 0.2 2 25 347 370 346 371 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZFP62-201 - 867 7.6e-190 607.8 171.4 11 27 1.3e-07 0.00016 21.9 1.2 2 25 375 398 374 399 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZFP62-201 - 867 7.6e-190 607.8 171.4 12 27 4.3e-09 5.6e-06 26.6 0.1 4 26 405 427 403 427 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZFP62-201 - 867 7.6e-190 607.8 171.4 13 27 6.4e-11 8.2e-08 32.3 0.2 1 24 430 453 430 455 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZFP62-201 - 867 7.6e-190 607.8 171.4 14 27 9.6e-10 1.2e-06 28.6 1.9 1 25 458 482 458 483 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZFP62-201 - 867 7.6e-190 607.8 171.4 15 27 4.1e-09 5.3e-06 26.6 0.3 1 26 486 511 486 511 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZFP62-201 - 867 7.6e-190 607.8 171.4 16 27 1.8e-10 2.3e-07 30.9 0.3 1 24 514 537 514 539 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZFP62-201 - 867 7.6e-190 607.8 171.4 17 27 1.9e-09 2.5e-06 27.7 0.4 2 25 543 566 542 567 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZFP62-201 - 867 7.6e-190 607.8 171.4 18 27 6.1e-10 7.8e-07 29.3 1.7 2 25 571 594 570 595 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZFP62-201 - 867 7.6e-190 607.8 171.4 19 27 2.1e-09 2.7e-06 27.5 1.4 2 26 599 623 599 623 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZFP62-201 - 867 7.6e-190 607.8 171.4 20 27 8.9e-11 1.1e-07 31.9 0.1 1 24 626 649 626 651 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZFP62-201 - 867 7.6e-190 607.8 171.4 21 27 1.1e-07 0.00014 22.1 1.0 2 24 655 677 654 679 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZFP62-201 - 867 7.6e-190 607.8 171.4 22 27 3e-09 3.9e-06 27.0 0.7 3 25 684 706 683 707 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZFP62-201 - 867 7.6e-190 607.8 171.4 23 27 1.8e-10 2.4e-07 30.9 0.4 2 26 711 735 711 735 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZFP62-201 - 867 7.6e-190 607.8 171.4 24 27 3.7e-11 4.7e-08 33.1 0.1 2 24 739 761 738 763 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZFP62-201 - 867 7.6e-190 607.8 171.4 25 27 0.00052 0.66 10.5 0.4 2 25 767 789 766 790 0.86 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZFP62-201 - 867 7.6e-190 607.8 171.4 26 27 3.2e-10 4.1e-07 30.1 0.8 2 25 794 817 794 817 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZFP62-201 - 867 7.6e-190 607.8 171.4 27 27 0.0017 2.1 8.9 0.2 1 12 821 832 821 837 0.92 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZFP62-201 - 867 4e-129 414.4 180.2 1 26 1.4e-06 0.0018 18.6 2.5 1 23 108 130 108 130 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZFP62-201 - 867 4e-129 414.4 180.2 2 26 8.3e-08 0.00011 22.5 0.4 1 23 136 158 136 158 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZFP62-201 - 867 4e-129 414.4 180.2 3 26 2.1e-06 0.0027 18.1 0.8 1 23 164 186 164 186 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZFP62-201 - 867 4e-129 414.4 180.2 4 26 9.2e-06 0.012 16.1 2.1 2 23 193 214 192 214 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZFP62-201 - 867 4e-129 414.4 180.2 5 26 1.1e-08 1.4e-05 25.3 0.2 1 23 220 242 220 242 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZFP62-201 - 867 4e-129 414.4 180.2 6 26 4.4e-09 5.6e-06 26.5 0.3 1 23 248 270 248 270 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZFP62-201 - 867 4e-129 414.4 180.2 7 26 5.3e-06 0.0067 16.8 1.0 1 23 276 298 276 298 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZFP62-201 - 867 4e-129 414.4 180.2 8 26 8.8e-07 0.0011 19.3 0.5 1 23 304 326 304 326 0.95 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZFP62-201 - 867 4e-129 414.4 180.2 9 26 2.5e-08 3.2e-05 24.2 0.1 1 23 332 354 332 354 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZFP62-201 - 867 4e-129 414.4 180.2 10 26 1.4e-07 0.00018 21.8 0.1 1 23 360 382 360 382 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZFP62-201 - 867 4e-129 414.4 180.2 11 26 5e-07 0.00063 20.1 1.9 1 23 388 410 388 410 0.95 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZFP62-201 - 867 4e-129 414.4 180.2 12 26 1.4e-08 1.8e-05 24.9 0.3 1 23 416 438 416 438 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZFP62-201 - 867 4e-129 414.4 180.2 13 26 1.2e-06 0.0015 18.8 0.3 1 23 444 466 444 466 0.94 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZFP62-201 - 867 4e-129 414.4 180.2 14 26 3.8e-08 4.9e-05 23.6 1.8 1 23 472 494 472 494 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZFP62-201 - 867 4e-129 414.4 180.2 15 26 1.8e-07 0.00023 21.4 0.2 3 23 502 522 500 522 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZFP62-201 - 867 4e-129 414.4 180.2 16 26 9.2e-07 0.0012 19.2 0.2 1 23 528 550 528 550 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZFP62-201 - 867 4e-129 414.4 180.2 17 26 7.5e-06 0.0096 16.3 1.1 1 23 556 578 556 578 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZFP62-201 - 867 4e-129 414.4 180.2 18 26 2.4e-07 0.00031 21.0 1.6 1 23 584 606 584 606 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZFP62-201 - 867 4e-129 414.4 180.2 19 26 8.5e-08 0.00011 22.5 1.0 1 23 612 634 612 634 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZFP62-201 - 867 4e-129 414.4 180.2 20 26 1.2e-06 0.0016 18.8 0.7 1 23 640 662 640 662 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZFP62-201 - 867 4e-129 414.4 180.2 21 26 3e-06 0.0038 17.6 1.9 1 23 668 690 668 690 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZFP62-201 - 867 4e-129 414.4 180.2 22 26 4e-08 5.1e-05 23.5 1.3 1 23 696 718 696 718 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZFP62-201 - 867 4e-129 414.4 180.2 23 26 3.1e-08 3.9e-05 23.9 0.3 1 23 724 746 724 746 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZFP62-201 - 867 4e-129 414.4 180.2 24 26 2.1e-06 0.0027 18.1 0.5 1 23 752 774 752 774 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZFP62-201 - 867 4e-129 414.4 180.2 25 26 0.00067 0.86 10.2 0.6 5 23 783 801 781 801 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZFP62-201 - 867 4e-129 414.4 180.2 26 26 1e-08 1.3e-05 25.3 1.5 1 23 807 829 807 829 0.99 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZFP62-201 - 867 4.8e-86 275.9 171.3 1 26 4.2e-05 0.054 14.4 1.9 1 23 108 130 108 131 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZFP62-201 - 867 4.8e-86 275.9 171.3 2 26 1.6e-06 0.0021 18.8 0.3 1 23 136 158 136 159 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZFP62-201 - 867 4.8e-86 275.9 171.3 3 26 3.8e-06 0.0049 17.6 0.7 1 23 164 186 164 187 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZFP62-201 - 867 4.8e-86 275.9 171.3 4 26 0.00023 0.29 12.1 1.8 2 23 193 214 192 215 0.85 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZFP62-201 - 867 4.8e-86 275.9 171.3 5 26 1e-05 0.013 16.3 0.2 1 23 220 242 220 243 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZFP62-201 - 867 4.8e-86 275.9 171.3 6 26 1.9e-07 0.00025 21.6 0.2 1 23 248 270 248 271 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZFP62-201 - 867 4.8e-86 275.9 171.3 7 26 2.2e-05 0.028 15.2 1.1 1 23 276 298 276 299 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZFP62-201 - 867 4.8e-86 275.9 171.3 8 26 0.00014 0.18 12.8 0.5 1 23 304 326 304 327 0.86 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZFP62-201 - 867 4.8e-86 275.9 171.3 9 26 1.6e-05 0.02 15.7 0.1 1 23 332 354 332 355 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZFP62-201 - 867 4.8e-86 275.9 171.3 10 26 2.7e-05 0.034 15.0 0.2 1 23 360 382 360 383 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZFP62-201 - 867 4.8e-86 275.9 171.3 11 26 5.1e-05 0.066 14.1 1.5 1 23 388 410 388 411 0.84 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZFP62-201 - 867 4.8e-86 275.9 171.3 12 26 3.5e-06 0.0044 17.7 0.2 1 23 416 438 416 439 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZFP62-201 - 867 4.8e-86 275.9 171.3 13 26 2.7e-05 0.035 15.0 0.2 1 23 444 466 444 467 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZFP62-201 - 867 4.8e-86 275.9 171.3 14 26 5.3e-06 0.0068 17.2 1.5 1 23 472 494 472 495 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZFP62-201 - 867 4.8e-86 275.9 171.3 15 26 4.6e-05 0.06 14.2 0.2 1 23 500 522 500 523 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZFP62-201 - 867 4.8e-86 275.9 171.3 16 26 4.3e-05 0.055 14.3 0.2 1 23 528 550 528 551 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZFP62-201 - 867 4.8e-86 275.9 171.3 17 26 2.3e-05 0.029 15.2 0.7 1 23 556 578 556 579 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZFP62-201 - 867 4.8e-86 275.9 171.3 18 26 2.1e-05 0.027 15.3 1.3 1 23 584 606 584 607 0.85 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZFP62-201 - 867 4.8e-86 275.9 171.3 19 26 2e-05 0.026 15.3 0.8 1 23 612 634 612 635 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZFP62-201 - 867 4.8e-86 275.9 171.3 20 26 1.7e-05 0.022 15.6 0.4 1 23 640 662 640 663 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZFP62-201 - 867 4.8e-86 275.9 171.3 21 26 7.6e-05 0.097 13.6 1.4 1 23 668 690 668 691 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZFP62-201 - 867 4.8e-86 275.9 171.3 22 26 1.3e-05 0.017 15.9 1.4 1 23 696 718 696 719 0.88 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZFP62-201 - 867 4.8e-86 275.9 171.3 23 26 4.9e-05 0.063 14.1 0.3 1 23 724 746 724 747 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZFP62-201 - 867 4.8e-86 275.9 171.3 24 26 0.00011 0.14 13.1 0.5 1 23 752 774 752 775 0.91 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZFP62-201 - 867 4.8e-86 275.9 171.3 25 26 0.0074 9.5 7.4 0.6 3 23 782 801 780 802 0.80 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZFP62-201 - 867 4.8e-86 275.9 171.3 26 26 5.8e-05 0.075 13.9 0.7 1 23 807 829 807 830 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZFP62-201 - 867 6.3e-69 227.0 169.5 1 26 1.4e-05 0.018 15.0 1.2 2 24 108 130 107 133 0.81 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZFP62-201 - 867 6.3e-69 227.0 169.5 2 26 4.3e-05 0.055 13.5 0.2 1 24 135 158 135 161 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZFP62-201 - 867 6.3e-69 227.0 169.5 3 26 3.1e-07 0.00039 20.3 1.7 2 25 164 187 164 189 0.95 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZFP62-201 - 867 6.3e-69 227.0 169.5 4 26 1.4e-05 0.018 15.1 0.5 3 24 193 214 193 217 0.92 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZFP62-201 - 867 6.3e-69 227.0 169.5 5 26 0.001 1.3 9.1 0.3 2 24 220 242 220 245 0.91 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZFP62-201 - 867 6.3e-69 227.0 169.5 6 26 8e-06 0.01 15.8 0.2 2 24 248 270 248 273 0.91 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZFP62-201 - 867 6.3e-69 227.0 169.5 7 26 0.00093 1.2 9.2 1.0 2 13 276 287 276 298 0.79 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZFP62-201 - 867 6.3e-69 227.0 169.5 8 26 0.0001 0.13 12.3 0.7 2 20 304 322 304 326 0.80 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZFP62-201 - 867 6.3e-69 227.0 169.5 9 26 4.5e-05 0.057 13.4 0.1 2 24 332 354 332 357 0.89 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZFP62-201 - 867 6.3e-69 227.0 169.5 10 26 4.1e-05 0.052 13.6 0.4 2 24 360 382 360 385 0.87 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZFP62-201 - 867 6.3e-69 227.0 169.5 11 26 9.7e-06 0.012 15.5 0.4 1 13 387 399 387 407 0.92 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZFP62-201 - 867 6.3e-69 227.0 169.5 12 26 0.00024 0.31 11.1 0.1 2 12 416 426 416 438 0.87 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZFP62-201 - 867 6.3e-69 227.0 169.5 13 26 0.0012 1.5 8.9 0.4 2 21 444 463 444 467 0.84 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZFP62-201 - 867 6.3e-69 227.0 169.5 14 26 6.1e-07 0.00078 19.4 2.5 2 24 472 494 472 497 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZFP62-201 - 867 6.3e-69 227.0 169.5 15 26 0.0023 3 8.0 0.2 2 13 500 511 500 524 0.74 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZFP62-201 - 867 6.3e-69 227.0 169.5 16 26 1.1e-05 0.014 15.4 0.2 2 25 528 551 528 553 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZFP62-201 - 867 6.3e-69 227.0 169.5 17 26 2.9e-06 0.0037 17.2 0.5 2 25 556 579 556 581 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZFP62-201 - 867 6.3e-69 227.0 169.5 18 26 9e-05 0.11 12.5 0.9 2 23 584 605 584 609 0.78 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZFP62-201 - 867 6.3e-69 227.0 169.5 19 26 0.002 2.6 8.2 0.4 2 24 612 634 612 637 0.85 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZFP62-201 - 867 6.3e-69 227.0 169.5 20 26 8.8e-07 0.0011 18.9 0.4 2 25 640 663 640 665 0.96 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZFP62-201 - 867 6.3e-69 227.0 169.5 21 26 6e-05 0.077 13.0 1.0 2 25 668 691 668 693 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZFP62-201 - 867 6.3e-69 227.0 169.5 22 26 0.0024 3.1 7.9 1.5 2 21 696 715 696 720 0.78 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZFP62-201 - 867 6.3e-69 227.0 169.5 23 26 0.0045 5.7 7.1 0.2 2 24 724 746 724 749 0.88 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZFP62-201 - 867 6.3e-69 227.0 169.5 24 26 2.8e-05 0.036 14.1 1.2 2 25 752 775 752 777 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZFP62-201 - 867 6.3e-69 227.0 169.5 25 26 0.011 14 5.8 0.6 6 24 783 801 780 804 0.89 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZFP62-201 - 867 6.3e-69 227.0 169.5 26 26 1.1e-06 0.0014 18.6 0.7 2 24 807 829 807 832 0.96 C2H2-type zinc finger zf-C2H2_jaz PF12171.8 27 ZFP62-201 - 867 3.9e-45 151.3 102.6 1 26 0.033 42 4.6 1.0 2 20 108 126 107 127 0.88 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZFP62-201 - 867 3.9e-45 151.3 102.6 2 26 0.067 86 3.6 0.0 2 22 136 156 135 156 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZFP62-201 - 867 3.9e-45 151.3 102.6 3 26 0.035 44 4.5 0.9 2 24 164 186 163 187 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZFP62-201 - 867 3.9e-45 151.3 102.6 4 26 0.0013 1.7 9.0 0.4 4 22 194 212 193 212 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZFP62-201 - 867 3.9e-45 151.3 102.6 5 26 0.0058 7.4 7.0 0.0 2 22 220 240 219 240 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZFP62-201 - 867 3.9e-45 151.3 102.6 6 26 4.5e-05 0.057 13.7 0.0 2 22 248 268 247 268 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZFP62-201 - 867 3.9e-45 151.3 102.6 7 26 0.0013 1.7 9.0 0.2 2 21 276 295 275 296 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZFP62-201 - 867 3.9e-45 151.3 102.6 8 26 0.0071 9.1 6.7 0.7 2 20 304 322 303 323 0.88 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZFP62-201 - 867 3.9e-45 151.3 102.6 9 26 0.0048 6.2 7.2 0.0 2 21 332 351 331 352 0.90 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZFP62-201 - 867 3.9e-45 151.3 102.6 10 26 0.15 1.9e+02 2.5 0.1 2 12 360 370 359 380 0.81 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZFP62-201 - 867 3.9e-45 151.3 102.6 11 26 0.011 14 6.1 0.3 2 20 388 406 387 408 0.87 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZFP62-201 - 867 3.9e-45 151.3 102.6 12 26 0.00097 1.2 9.5 0.0 2 21 416 435 415 436 0.90 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZFP62-201 - 867 3.9e-45 151.3 102.6 13 26 7.2e-05 0.093 13.1 0.1 2 21 444 463 443 463 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZFP62-201 - 867 3.9e-45 151.3 102.6 14 26 0.00015 0.19 12.0 1.2 2 22 472 492 471 492 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZFP62-201 - 867 3.9e-45 151.3 102.6 15 26 0.0096 12 6.3 0.0 4 22 502 520 499 520 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZFP62-201 - 867 3.9e-45 151.3 102.6 16 26 0.00062 0.79 10.1 0.1 2 21 528 547 527 548 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZFP62-201 - 867 3.9e-45 151.3 102.6 17 26 0.00013 0.17 12.2 0.5 2 22 556 576 555 576 0.95 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZFP62-201 - 867 3.9e-45 151.3 102.6 18 26 0.011 14 6.1 0.2 2 20 584 602 583 604 0.76 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZFP62-201 - 867 3.9e-45 151.3 102.6 19 26 0.00092 1.2 9.5 0.2 2 22 612 632 611 632 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZFP62-201 - 867 3.9e-45 151.3 102.6 20 26 6.1e-06 0.0078 16.5 0.2 2 24 640 662 639 663 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZFP62-201 - 867 3.9e-45 151.3 102.6 21 26 0.0024 3 8.2 0.1 2 22 668 688 667 688 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZFP62-201 - 867 3.9e-45 151.3 102.6 22 26 0.0015 1.9 8.9 0.1 2 21 696 715 695 716 0.90 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZFP62-201 - 867 3.9e-45 151.3 102.6 23 26 0.33 4.2e+02 1.4 0.0 2 22 724 744 723 744 0.86 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZFP62-201 - 867 3.9e-45 151.3 102.6 24 26 7.7e-05 0.098 13.0 0.2 2 21 752 771 751 772 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZFP62-201 - 867 3.9e-45 151.3 102.6 25 26 0.11 1.4e+02 2.9 0.2 6 22 783 799 782 799 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZFP62-201 - 867 3.9e-45 151.3 102.6 26 26 0.023 30 5.1 0.3 2 24 807 829 806 829 0.92 Zinc-finger double-stranded RNA-binding Zn-ribbon_8 PF09723.10 40 ZFP62-201 - 867 5.3e-11 42.5 130.3 1 22 0.00099 1.3 9.2 3.5 7 36 109 145 106 147 0.87 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZFP62-201 - 867 5.3e-11 42.5 130.3 2 22 9.5e-05 0.12 12.5 4.0 6 34 136 171 134 175 0.87 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZFP62-201 - 867 5.3e-11 42.5 130.3 3 22 0.038 49 4.2 6.3 6 34 164 199 163 202 0.78 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZFP62-201 - 867 5.3e-11 42.5 130.3 4 22 0.0031 4 7.7 4.2 7 36 193 229 191 232 0.86 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZFP62-201 - 867 5.3e-11 42.5 130.3 5 22 0.0025 3.1 8.0 3.8 6 34 220 255 218 256 0.88 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZFP62-201 - 867 5.3e-11 42.5 130.3 6 22 0.00014 0.18 11.9 2.3 6 34 248 283 246 287 0.88 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZFP62-201 - 867 5.3e-11 42.5 130.3 7 22 0.00078 1 9.6 4.0 6 36 304 341 303 343 0.82 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZFP62-201 - 867 5.3e-11 42.5 130.3 8 22 9e-05 0.11 12.6 1.4 6 34 360 395 358 400 0.81 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZFP62-201 - 867 5.3e-11 42.5 130.3 9 22 0.00034 0.44 10.7 0.5 6 34 416 451 415 456 0.86 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZFP62-201 - 867 5.3e-11 42.5 130.3 10 22 0.015 19 5.5 3.9 6 36 472 509 471 512 0.84 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZFP62-201 - 867 5.3e-11 42.5 130.3 11 22 0.012 15 5.8 5.6 6 34 500 535 496 537 0.86 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZFP62-201 - 867 5.3e-11 42.5 130.3 12 22 0.25 3.2e+02 1.6 5.5 6 32 528 561 527 564 0.61 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZFP62-201 - 867 5.3e-11 42.5 130.3 13 22 3.7 4.8e+03 -2.2 5.3 6 32 556 589 554 592 0.57 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZFP62-201 - 867 5.3e-11 42.5 130.3 14 22 0.095 1.2e+02 2.9 5.2 6 34 584 619 583 623 0.82 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZFP62-201 - 867 5.3e-11 42.5 130.3 15 22 0.0028 3.5 7.8 3.0 6 34 612 647 611 651 0.86 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZFP62-201 - 867 5.3e-11 42.5 130.3 16 22 0.15 1.9e+02 2.3 3.7 6 34 640 675 639 681 0.68 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZFP62-201 - 867 5.3e-11 42.5 130.3 17 22 0.51 6.5e+02 0.6 0.5 8 15 670 677 667 687 0.80 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZFP62-201 - 867 5.3e-11 42.5 130.3 18 22 0.00032 0.4 10.8 1.6 6 36 696 733 695 735 0.85 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZFP62-201 - 867 5.3e-11 42.5 130.3 19 22 0.00024 0.31 11.2 2.3 6 34 724 759 723 763 0.89 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZFP62-201 - 867 5.3e-11 42.5 130.3 20 22 0.36 4.6e+02 1.0 3.9 6 29 752 782 751 794 0.62 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZFP62-201 - 867 5.3e-11 42.5 130.3 21 22 2.2 2.9e+03 -1.5 0.1 6 16 780 789 779 801 0.76 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZFP62-201 - 867 5.3e-11 42.5 130.3 22 22 0.00089 1.1 9.4 0.1 6 20 807 821 806 829 0.81 Zinc ribbon domain XPA_N PF01286.18 32 ZFP62-201 - 867 7.1e-10 38.8 129.8 1 26 0.0027 3.5 7.7 0.2 3 12 109 118 108 126 0.80 XPA protein N-terminal XPA_N PF01286.18 32 ZFP62-201 - 867 7.1e-10 38.8 129.8 2 26 0.074 95 3.2 0.3 3 14 137 148 135 150 0.89 XPA protein N-terminal XPA_N PF01286.18 32 ZFP62-201 - 867 7.1e-10 38.8 129.8 3 26 0.032 40 4.4 0.0 3 11 165 173 163 180 0.86 XPA protein N-terminal XPA_N PF01286.18 32 ZFP62-201 - 867 7.1e-10 38.8 129.8 4 26 0.0061 7.8 6.6 1.6 3 14 193 204 192 210 0.86 XPA protein N-terminal XPA_N PF01286.18 32 ZFP62-201 - 867 7.1e-10 38.8 129.8 5 26 0.011 14 5.8 0.1 3 14 221 232 219 233 0.91 XPA protein N-terminal XPA_N PF01286.18 32 ZFP62-201 - 867 7.1e-10 38.8 129.8 6 26 0.025 32 4.7 0.3 3 14 249 260 247 261 0.91 XPA protein N-terminal XPA_N PF01286.18 32 ZFP62-201 - 867 7.1e-10 38.8 129.8 7 26 0.0075 9.7 6.3 1.0 3 12 277 286 275 289 0.88 XPA protein N-terminal XPA_N PF01286.18 32 ZFP62-201 - 867 7.1e-10 38.8 129.8 8 26 0.0012 1.5 8.9 0.5 3 17 305 319 303 323 0.89 XPA protein N-terminal XPA_N PF01286.18 32 ZFP62-201 - 867 7.1e-10 38.8 129.8 9 26 0.0011 1.3 9.1 0.3 3 14 333 344 331 345 0.91 XPA protein N-terminal XPA_N PF01286.18 32 ZFP62-201 - 867 7.1e-10 38.8 129.8 10 26 0.049 63 3.7 0.1 3 14 361 372 359 373 0.86 XPA protein N-terminal XPA_N PF01286.18 32 ZFP62-201 - 867 7.1e-10 38.8 129.8 11 26 0.0041 5.3 7.2 0.3 2 17 388 404 387 406 0.74 XPA protein N-terminal XPA_N PF01286.18 32 ZFP62-201 - 867 7.1e-10 38.8 129.8 12 26 0.12 1.6e+02 2.5 0.1 3 11 417 425 415 427 0.72 XPA protein N-terminal XPA_N PF01286.18 32 ZFP62-201 - 867 7.1e-10 38.8 129.8 13 26 0.91 1.2e+03 -0.3 0.1 3 9 445 451 443 454 0.70 XPA protein N-terminal XPA_N PF01286.18 32 ZFP62-201 - 867 7.1e-10 38.8 129.8 14 26 0.62 7.9e+02 0.2 0.1 3 14 473 484 471 487 0.86 XPA protein N-terminal XPA_N PF01286.18 32 ZFP62-201 - 867 7.1e-10 38.8 129.8 15 26 0.016 21 5.3 0.3 4 12 502 510 501 512 0.90 XPA protein N-terminal XPA_N PF01286.18 32 ZFP62-201 - 867 7.1e-10 38.8 129.8 16 26 0.054 69 3.6 0.1 3 10 529 536 527 542 0.89 XPA protein N-terminal XPA_N PF01286.18 32 ZFP62-201 - 867 7.1e-10 38.8 129.8 17 26 0.011 14 5.8 0.4 3 12 557 566 555 568 0.89 XPA protein N-terminal XPA_N PF01286.18 32 ZFP62-201 - 867 7.1e-10 38.8 129.8 18 26 0.095 1.2e+02 2.8 0.3 3 17 585 599 583 602 0.75 XPA protein N-terminal XPA_N PF01286.18 32 ZFP62-201 - 867 7.1e-10 38.8 129.8 19 26 0.43 5.5e+02 0.7 0.2 3 11 613 621 611 624 0.82 XPA protein N-terminal XPA_N PF01286.18 32 ZFP62-201 - 867 7.1e-10 38.8 129.8 20 26 0.98 1.3e+03 -0.4 0.1 3 9 641 647 639 650 0.65 XPA protein N-terminal XPA_N PF01286.18 32 ZFP62-201 - 867 7.1e-10 38.8 129.8 21 26 0.0014 1.8 8.7 0.2 3 14 669 680 667 683 0.87 XPA protein N-terminal XPA_N PF01286.18 32 ZFP62-201 - 867 7.1e-10 38.8 129.8 22 26 0.0011 1.4 9.0 0.5 3 18 697 712 695 715 0.89 XPA protein N-terminal XPA_N PF01286.18 32 ZFP62-201 - 867 7.1e-10 38.8 129.8 23 26 0.014 18 5.5 0.1 3 14 725 736 723 737 0.88 XPA protein N-terminal XPA_N PF01286.18 32 ZFP62-201 - 867 7.1e-10 38.8 129.8 24 26 0.045 58 3.8 0.1 3 10 753 760 751 769 0.88 XPA protein N-terminal XPA_N PF01286.18 32 ZFP62-201 - 867 7.1e-10 38.8 129.8 25 26 7.2 9.3e+03 -3.2 0.8 6 11 783 788 782 789 0.87 XPA protein N-terminal XPA_N PF01286.18 32 ZFP62-201 - 867 7.1e-10 38.8 129.8 26 26 0.029 37 4.5 0.0 3 11 808 816 806 822 0.90 XPA protein N-terminal zf_UBZ PF18439.1 32 ZFP62-201 - 867 3.3e-07 29.8 108.2 1 25 0.008 10 5.8 0.2 3 14 108 119 106 127 0.79 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZFP62-201 - 867 3.3e-07 29.8 108.2 2 25 0.076 97 2.7 0.1 2 14 135 147 134 154 0.79 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZFP62-201 - 867 3.3e-07 29.8 108.2 3 25 0.025 32 4.2 0.2 3 10 164 171 162 178 0.88 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZFP62-201 - 867 3.3e-07 29.8 108.2 4 25 0.017 22 4.8 0.7 4 15 193 204 190 211 0.76 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZFP62-201 - 867 3.3e-07 29.8 108.2 5 25 0.1 1.3e+02 2.3 0.1 3 12 220 229 218 233 0.86 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZFP62-201 - 867 3.3e-07 29.8 108.2 6 25 0.016 21 4.8 0.1 3 14 248 259 246 263 0.87 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZFP62-201 - 867 3.3e-07 29.8 108.2 7 25 0.017 22 4.8 0.4 3 12 276 285 274 294 0.88 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZFP62-201 - 867 3.3e-07 29.8 108.2 8 25 0.016 20 4.9 0.2 3 14 304 315 302 323 0.79 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZFP62-201 - 867 3.3e-07 29.8 108.2 9 25 0.016 20 4.9 0.2 3 12 332 341 330 345 0.86 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZFP62-201 - 867 3.3e-07 29.8 108.2 10 25 0.12 1.5e+02 2.1 0.1 3 13 360 370 358 375 0.87 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZFP62-201 - 867 3.3e-07 29.8 108.2 11 25 0.012 16 5.2 0.1 4 16 389 402 386 407 0.76 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZFP62-201 - 867 3.3e-07 29.8 108.2 12 25 0.06 77 3.0 0.1 3 12 416 425 414 429 0.89 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZFP62-201 - 867 3.3e-07 29.8 108.2 13 25 0.26 3.4e+02 1.0 0.1 3 11 444 452 442 463 0.78 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZFP62-201 - 867 3.3e-07 29.8 108.2 14 25 0.11 1.5e+02 2.1 0.2 3 20 472 490 470 491 0.84 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZFP62-201 - 867 3.3e-07 29.8 108.2 15 25 0.087 1.1e+02 2.5 0.1 4 12 501 509 498 512 0.84 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZFP62-201 - 867 3.3e-07 29.8 108.2 16 25 0.016 21 4.8 0.1 3 11 528 536 526 547 0.80 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZFP62-201 - 867 3.3e-07 29.8 108.2 17 25 0.07 90 2.8 0.1 3 13 556 566 554 575 0.80 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZFP62-201 - 867 3.3e-07 29.8 108.2 18 25 0.31 3.9e+02 0.7 0.1 3 15 584 596 582 602 0.79 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZFP62-201 - 867 3.3e-07 29.8 108.2 19 25 0.031 39 3.9 0.2 3 12 612 621 610 628 0.86 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZFP62-201 - 867 3.3e-07 29.8 108.2 20 25 0.23 2.9e+02 1.2 0.1 3 15 640 652 638 659 0.75 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZFP62-201 - 867 3.3e-07 29.8 108.2 21 25 0.0083 11 5.8 0.1 3 20 668 686 666 687 0.75 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZFP62-201 - 867 3.3e-07 29.8 108.2 22 25 0.024 31 4.3 0.1 3 16 696 710 694 715 0.77 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZFP62-201 - 867 3.3e-07 29.8 108.2 23 25 0.0024 3.1 7.5 0.1 3 12 724 733 722 738 0.87 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZFP62-201 - 867 3.3e-07 29.8 108.2 24 25 0.01 13 5.5 0.2 3 15 752 764 750 771 0.75 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZFP62-201 - 867 3.3e-07 29.8 108.2 25 25 0.039 50 3.6 0.1 3 15 807 819 805 826 0.78 Ubiquitin-Binding Zinc Finger zf-met PF12874.7 25 ZFP62-201 - 867 6.3e-07 29.6 152.2 1 26 0.5 6.4e+02 1.0 0.7 2 19 109 126 108 127 0.84 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZFP62-201 - 867 6.3e-07 29.6 152.2 2 26 0.18 2.3e+02 2.3 0.1 1 21 136 156 136 159 0.89 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZFP62-201 - 867 6.3e-07 29.6 152.2 3 26 0.83 1.1e+03 0.3 1.2 1 20 164 183 164 186 0.88 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZFP62-201 - 867 6.3e-07 29.6 152.2 4 26 0.0016 2.1 8.9 0.7 3 21 194 212 193 215 0.91 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZFP62-201 - 867 6.3e-07 29.6 152.2 5 26 0.28 3.6e+02 1.7 0.1 1 21 220 240 220 243 0.89 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZFP62-201 - 867 6.3e-07 29.6 152.2 6 26 0.00017 0.22 11.9 0.2 1 21 248 268 248 271 0.90 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZFP62-201 - 867 6.3e-07 29.6 152.2 7 26 6.7 8.6e+03 -2.6 0.2 1 10 276 285 276 287 0.83 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZFP62-201 - 867 6.3e-07 29.6 152.2 8 26 0.0039 5 7.7 1.1 1 19 304 322 304 326 0.94 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZFP62-201 - 867 6.3e-07 29.6 152.2 9 26 0.27 3.4e+02 1.8 0.1 1 21 332 352 332 355 0.88 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZFP62-201 - 867 6.3e-07 29.6 152.2 10 26 0.065 83 3.8 0.2 1 19 360 378 360 382 0.81 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZFP62-201 - 867 6.3e-07 29.6 152.2 11 26 0.035 45 4.6 0.6 2 19 389 406 388 408 0.94 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZFP62-201 - 867 6.3e-07 29.6 152.2 12 26 0.00087 1.1 9.7 0.0 1 19 416 434 416 436 0.92 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZFP62-201 - 867 6.3e-07 29.6 152.2 13 26 0.00013 0.17 12.3 0.1 1 19 444 462 444 465 0.95 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZFP62-201 - 867 6.3e-07 29.6 152.2 14 26 0.0022 2.8 8.4 2.5 1 21 472 492 472 495 0.90 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZFP62-201 - 867 6.3e-07 29.6 152.2 15 26 0.41 5.2e+02 1.2 0.1 3 21 502 520 500 523 0.88 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZFP62-201 - 867 6.3e-07 29.6 152.2 16 26 0.027 34 5.0 0.2 1 19 528 546 528 549 0.94 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZFP62-201 - 867 6.3e-07 29.6 152.2 17 26 5 6.4e+03 -2.2 0.4 1 10 556 565 556 567 0.85 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZFP62-201 - 867 6.3e-07 29.6 152.2 18 26 0.00086 1.1 9.7 0.9 1 19 584 602 584 606 0.91 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZFP62-201 - 867 6.3e-07 29.6 152.2 19 26 0.00073 0.94 10.0 0.6 1 21 612 632 612 635 0.91 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZFP62-201 - 867 6.3e-07 29.6 152.2 20 26 0.00096 1.2 9.6 1.2 1 20 640 659 640 662 0.93 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZFP62-201 - 867 6.3e-07 29.6 152.2 21 26 0.14 1.8e+02 2.7 0.5 2 21 669 688 668 690 0.90 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZFP62-201 - 867 6.3e-07 29.6 152.2 22 26 0.037 48 4.5 1.2 1 21 696 716 696 719 0.91 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZFP62-201 - 867 6.3e-07 29.6 152.2 23 26 1.4 1.8e+03 -0.4 0.1 1 19 724 742 724 746 0.79 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZFP62-201 - 867 6.3e-07 29.6 152.2 24 26 0.026 34 5.0 1.0 1 20 752 771 752 774 0.93 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZFP62-201 - 867 6.3e-07 29.6 152.2 25 26 0.0086 11 6.6 0.1 6 21 784 799 783 802 0.91 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZFP62-201 - 867 6.3e-07 29.6 152.2 26 26 1.2 1.5e+03 -0.2 0.5 1 21 807 827 807 830 0.81 Zinc-finger of C2H2 type # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFP62-201.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFP62-201.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFP62-201.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFP62-201.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFP62-201.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:58:48 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFP62-202.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFP62-202.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFP62-202.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFP62-202.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFP62-202.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:58:48 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFP62-203.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFP62-203.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFP62-203.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFP62-203.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFP62-203.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:58:48 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFP62-204.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFP62-204.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFP62-204.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFP62-204.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFP62-204.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:58:49 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFP62-205.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFP62-205.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFP62-205.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFP62-205.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFP62-205.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:58:49 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFP62-206.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFP62-206.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFP62-206.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFP62-206.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFP62-206.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:58:50 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZFP62-207 - 867 7.6e-190 607.8 171.4 1 27 0.00029 0.37 11.3 1.5 11 26 104 119 100 119 0.90 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZFP62-207 - 867 7.6e-190 607.8 171.4 2 27 9.9e-09 1.3e-05 25.4 0.1 2 25 123 146 122 147 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZFP62-207 - 867 7.6e-190 607.8 171.4 3 27 8.8e-11 1.1e-07 31.9 1.0 1 24 150 173 150 173 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZFP62-207 - 867 7.6e-190 607.8 171.4 4 27 1e-05 0.013 15.9 1.9 2 25 179 202 178 203 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZFP62-207 - 867 7.6e-190 607.8 171.4 5 27 6.2e-11 7.9e-08 32.4 0.3 2 26 207 231 207 231 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZFP62-207 - 867 7.6e-190 607.8 171.4 6 27 2.7e-12 3.5e-09 36.7 0.2 1 26 234 259 234 259 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZFP62-207 - 867 7.6e-190 607.8 171.4 7 27 3.5e-12 4.5e-09 36.3 0.1 1 25 262 286 262 287 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZFP62-207 - 867 7.6e-190 607.8 171.4 8 27 1.1e-07 0.00014 22.1 1.0 4 25 293 314 291 315 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZFP62-207 - 867 7.6e-190 607.8 171.4 9 27 4.4e-10 5.7e-07 29.7 0.2 4 26 321 343 319 343 0.90 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZFP62-207 - 867 7.6e-190 607.8 171.4 10 27 2.3e-11 2.9e-08 33.7 0.2 2 25 347 370 346 371 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZFP62-207 - 867 7.6e-190 607.8 171.4 11 27 1.3e-07 0.00016 21.9 1.2 2 25 375 398 374 399 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZFP62-207 - 867 7.6e-190 607.8 171.4 12 27 4.3e-09 5.6e-06 26.6 0.1 4 26 405 427 403 427 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZFP62-207 - 867 7.6e-190 607.8 171.4 13 27 6.4e-11 8.2e-08 32.3 0.2 1 24 430 453 430 455 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZFP62-207 - 867 7.6e-190 607.8 171.4 14 27 9.6e-10 1.2e-06 28.6 1.9 1 25 458 482 458 483 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZFP62-207 - 867 7.6e-190 607.8 171.4 15 27 4.1e-09 5.3e-06 26.6 0.3 1 26 486 511 486 511 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZFP62-207 - 867 7.6e-190 607.8 171.4 16 27 1.8e-10 2.3e-07 30.9 0.3 1 24 514 537 514 539 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZFP62-207 - 867 7.6e-190 607.8 171.4 17 27 1.9e-09 2.5e-06 27.7 0.4 2 25 543 566 542 567 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZFP62-207 - 867 7.6e-190 607.8 171.4 18 27 6.1e-10 7.8e-07 29.3 1.7 2 25 571 594 570 595 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZFP62-207 - 867 7.6e-190 607.8 171.4 19 27 2.1e-09 2.7e-06 27.5 1.4 2 26 599 623 599 623 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZFP62-207 - 867 7.6e-190 607.8 171.4 20 27 8.9e-11 1.1e-07 31.9 0.1 1 24 626 649 626 651 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZFP62-207 - 867 7.6e-190 607.8 171.4 21 27 1.1e-07 0.00014 22.1 1.0 2 24 655 677 654 679 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZFP62-207 - 867 7.6e-190 607.8 171.4 22 27 3e-09 3.9e-06 27.0 0.7 3 25 684 706 683 707 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZFP62-207 - 867 7.6e-190 607.8 171.4 23 27 1.8e-10 2.4e-07 30.9 0.4 2 26 711 735 711 735 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZFP62-207 - 867 7.6e-190 607.8 171.4 24 27 3.7e-11 4.7e-08 33.1 0.1 2 24 739 761 738 763 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZFP62-207 - 867 7.6e-190 607.8 171.4 25 27 0.00052 0.66 10.5 0.4 2 25 767 789 766 790 0.86 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZFP62-207 - 867 7.6e-190 607.8 171.4 26 27 3.2e-10 4.1e-07 30.1 0.8 2 25 794 817 794 817 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZFP62-207 - 867 7.6e-190 607.8 171.4 27 27 0.0017 2.1 8.9 0.2 1 12 821 832 821 837 0.92 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZFP62-207 - 867 4e-129 414.4 180.2 1 26 1.4e-06 0.0018 18.6 2.5 1 23 108 130 108 130 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZFP62-207 - 867 4e-129 414.4 180.2 2 26 8.3e-08 0.00011 22.5 0.4 1 23 136 158 136 158 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZFP62-207 - 867 4e-129 414.4 180.2 3 26 2.1e-06 0.0027 18.1 0.8 1 23 164 186 164 186 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZFP62-207 - 867 4e-129 414.4 180.2 4 26 9.2e-06 0.012 16.1 2.1 2 23 193 214 192 214 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZFP62-207 - 867 4e-129 414.4 180.2 5 26 1.1e-08 1.4e-05 25.3 0.2 1 23 220 242 220 242 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZFP62-207 - 867 4e-129 414.4 180.2 6 26 4.4e-09 5.6e-06 26.5 0.3 1 23 248 270 248 270 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZFP62-207 - 867 4e-129 414.4 180.2 7 26 5.3e-06 0.0067 16.8 1.0 1 23 276 298 276 298 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZFP62-207 - 867 4e-129 414.4 180.2 8 26 8.8e-07 0.0011 19.3 0.5 1 23 304 326 304 326 0.95 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZFP62-207 - 867 4e-129 414.4 180.2 9 26 2.5e-08 3.2e-05 24.2 0.1 1 23 332 354 332 354 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZFP62-207 - 867 4e-129 414.4 180.2 10 26 1.4e-07 0.00018 21.8 0.1 1 23 360 382 360 382 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZFP62-207 - 867 4e-129 414.4 180.2 11 26 5e-07 0.00063 20.1 1.9 1 23 388 410 388 410 0.95 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZFP62-207 - 867 4e-129 414.4 180.2 12 26 1.4e-08 1.8e-05 24.9 0.3 1 23 416 438 416 438 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZFP62-207 - 867 4e-129 414.4 180.2 13 26 1.2e-06 0.0015 18.8 0.3 1 23 444 466 444 466 0.94 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZFP62-207 - 867 4e-129 414.4 180.2 14 26 3.8e-08 4.9e-05 23.6 1.8 1 23 472 494 472 494 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZFP62-207 - 867 4e-129 414.4 180.2 15 26 1.8e-07 0.00023 21.4 0.2 3 23 502 522 500 522 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZFP62-207 - 867 4e-129 414.4 180.2 16 26 9.2e-07 0.0012 19.2 0.2 1 23 528 550 528 550 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZFP62-207 - 867 4e-129 414.4 180.2 17 26 7.5e-06 0.0096 16.3 1.1 1 23 556 578 556 578 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZFP62-207 - 867 4e-129 414.4 180.2 18 26 2.4e-07 0.00031 21.0 1.6 1 23 584 606 584 606 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZFP62-207 - 867 4e-129 414.4 180.2 19 26 8.5e-08 0.00011 22.5 1.0 1 23 612 634 612 634 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZFP62-207 - 867 4e-129 414.4 180.2 20 26 1.2e-06 0.0016 18.8 0.7 1 23 640 662 640 662 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZFP62-207 - 867 4e-129 414.4 180.2 21 26 3e-06 0.0038 17.6 1.9 1 23 668 690 668 690 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZFP62-207 - 867 4e-129 414.4 180.2 22 26 4e-08 5.1e-05 23.5 1.3 1 23 696 718 696 718 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZFP62-207 - 867 4e-129 414.4 180.2 23 26 3.1e-08 3.9e-05 23.9 0.3 1 23 724 746 724 746 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZFP62-207 - 867 4e-129 414.4 180.2 24 26 2.1e-06 0.0027 18.1 0.5 1 23 752 774 752 774 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZFP62-207 - 867 4e-129 414.4 180.2 25 26 0.00067 0.86 10.2 0.6 5 23 783 801 781 801 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZFP62-207 - 867 4e-129 414.4 180.2 26 26 1e-08 1.3e-05 25.3 1.5 1 23 807 829 807 829 0.99 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZFP62-207 - 867 4.8e-86 275.9 171.3 1 26 4.2e-05 0.054 14.4 1.9 1 23 108 130 108 131 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZFP62-207 - 867 4.8e-86 275.9 171.3 2 26 1.6e-06 0.0021 18.8 0.3 1 23 136 158 136 159 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZFP62-207 - 867 4.8e-86 275.9 171.3 3 26 3.8e-06 0.0049 17.6 0.7 1 23 164 186 164 187 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZFP62-207 - 867 4.8e-86 275.9 171.3 4 26 0.00023 0.29 12.1 1.8 2 23 193 214 192 215 0.85 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZFP62-207 - 867 4.8e-86 275.9 171.3 5 26 1e-05 0.013 16.3 0.2 1 23 220 242 220 243 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZFP62-207 - 867 4.8e-86 275.9 171.3 6 26 1.9e-07 0.00025 21.6 0.2 1 23 248 270 248 271 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZFP62-207 - 867 4.8e-86 275.9 171.3 7 26 2.2e-05 0.028 15.2 1.1 1 23 276 298 276 299 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZFP62-207 - 867 4.8e-86 275.9 171.3 8 26 0.00014 0.18 12.8 0.5 1 23 304 326 304 327 0.86 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZFP62-207 - 867 4.8e-86 275.9 171.3 9 26 1.6e-05 0.02 15.7 0.1 1 23 332 354 332 355 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZFP62-207 - 867 4.8e-86 275.9 171.3 10 26 2.7e-05 0.034 15.0 0.2 1 23 360 382 360 383 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZFP62-207 - 867 4.8e-86 275.9 171.3 11 26 5.1e-05 0.066 14.1 1.5 1 23 388 410 388 411 0.84 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZFP62-207 - 867 4.8e-86 275.9 171.3 12 26 3.5e-06 0.0044 17.7 0.2 1 23 416 438 416 439 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZFP62-207 - 867 4.8e-86 275.9 171.3 13 26 2.7e-05 0.035 15.0 0.2 1 23 444 466 444 467 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZFP62-207 - 867 4.8e-86 275.9 171.3 14 26 5.3e-06 0.0068 17.2 1.5 1 23 472 494 472 495 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZFP62-207 - 867 4.8e-86 275.9 171.3 15 26 4.6e-05 0.06 14.2 0.2 1 23 500 522 500 523 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZFP62-207 - 867 4.8e-86 275.9 171.3 16 26 4.3e-05 0.055 14.3 0.2 1 23 528 550 528 551 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZFP62-207 - 867 4.8e-86 275.9 171.3 17 26 2.3e-05 0.029 15.2 0.7 1 23 556 578 556 579 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZFP62-207 - 867 4.8e-86 275.9 171.3 18 26 2.1e-05 0.027 15.3 1.3 1 23 584 606 584 607 0.85 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZFP62-207 - 867 4.8e-86 275.9 171.3 19 26 2e-05 0.026 15.3 0.8 1 23 612 634 612 635 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZFP62-207 - 867 4.8e-86 275.9 171.3 20 26 1.7e-05 0.022 15.6 0.4 1 23 640 662 640 663 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZFP62-207 - 867 4.8e-86 275.9 171.3 21 26 7.6e-05 0.097 13.6 1.4 1 23 668 690 668 691 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZFP62-207 - 867 4.8e-86 275.9 171.3 22 26 1.3e-05 0.017 15.9 1.4 1 23 696 718 696 719 0.88 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZFP62-207 - 867 4.8e-86 275.9 171.3 23 26 4.9e-05 0.063 14.1 0.3 1 23 724 746 724 747 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZFP62-207 - 867 4.8e-86 275.9 171.3 24 26 0.00011 0.14 13.1 0.5 1 23 752 774 752 775 0.91 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZFP62-207 - 867 4.8e-86 275.9 171.3 25 26 0.0074 9.5 7.4 0.6 3 23 782 801 780 802 0.80 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZFP62-207 - 867 4.8e-86 275.9 171.3 26 26 5.8e-05 0.075 13.9 0.7 1 23 807 829 807 830 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZFP62-207 - 867 6.3e-69 227.0 169.5 1 26 1.4e-05 0.018 15.0 1.2 2 24 108 130 107 133 0.81 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZFP62-207 - 867 6.3e-69 227.0 169.5 2 26 4.3e-05 0.055 13.5 0.2 1 24 135 158 135 161 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZFP62-207 - 867 6.3e-69 227.0 169.5 3 26 3.1e-07 0.00039 20.3 1.7 2 25 164 187 164 189 0.95 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZFP62-207 - 867 6.3e-69 227.0 169.5 4 26 1.4e-05 0.018 15.1 0.5 3 24 193 214 193 217 0.92 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZFP62-207 - 867 6.3e-69 227.0 169.5 5 26 0.001 1.3 9.1 0.3 2 24 220 242 220 245 0.91 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZFP62-207 - 867 6.3e-69 227.0 169.5 6 26 8e-06 0.01 15.8 0.2 2 24 248 270 248 273 0.91 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZFP62-207 - 867 6.3e-69 227.0 169.5 7 26 0.00093 1.2 9.2 1.0 2 13 276 287 276 298 0.79 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZFP62-207 - 867 6.3e-69 227.0 169.5 8 26 0.0001 0.13 12.3 0.7 2 20 304 322 304 326 0.80 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZFP62-207 - 867 6.3e-69 227.0 169.5 9 26 4.5e-05 0.057 13.4 0.1 2 24 332 354 332 357 0.89 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZFP62-207 - 867 6.3e-69 227.0 169.5 10 26 4.1e-05 0.052 13.6 0.4 2 24 360 382 360 385 0.87 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZFP62-207 - 867 6.3e-69 227.0 169.5 11 26 9.7e-06 0.012 15.5 0.4 1 13 387 399 387 407 0.92 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZFP62-207 - 867 6.3e-69 227.0 169.5 12 26 0.00024 0.31 11.1 0.1 2 12 416 426 416 438 0.87 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZFP62-207 - 867 6.3e-69 227.0 169.5 13 26 0.0012 1.5 8.9 0.4 2 21 444 463 444 467 0.84 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZFP62-207 - 867 6.3e-69 227.0 169.5 14 26 6.1e-07 0.00078 19.4 2.5 2 24 472 494 472 497 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZFP62-207 - 867 6.3e-69 227.0 169.5 15 26 0.0023 3 8.0 0.2 2 13 500 511 500 524 0.74 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZFP62-207 - 867 6.3e-69 227.0 169.5 16 26 1.1e-05 0.014 15.4 0.2 2 25 528 551 528 553 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZFP62-207 - 867 6.3e-69 227.0 169.5 17 26 2.9e-06 0.0037 17.2 0.5 2 25 556 579 556 581 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZFP62-207 - 867 6.3e-69 227.0 169.5 18 26 9e-05 0.11 12.5 0.9 2 23 584 605 584 609 0.78 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZFP62-207 - 867 6.3e-69 227.0 169.5 19 26 0.002 2.6 8.2 0.4 2 24 612 634 612 637 0.85 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZFP62-207 - 867 6.3e-69 227.0 169.5 20 26 8.8e-07 0.0011 18.9 0.4 2 25 640 663 640 665 0.96 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZFP62-207 - 867 6.3e-69 227.0 169.5 21 26 6e-05 0.077 13.0 1.0 2 25 668 691 668 693 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZFP62-207 - 867 6.3e-69 227.0 169.5 22 26 0.0024 3.1 7.9 1.5 2 21 696 715 696 720 0.78 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZFP62-207 - 867 6.3e-69 227.0 169.5 23 26 0.0045 5.7 7.1 0.2 2 24 724 746 724 749 0.88 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZFP62-207 - 867 6.3e-69 227.0 169.5 24 26 2.8e-05 0.036 14.1 1.2 2 25 752 775 752 777 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZFP62-207 - 867 6.3e-69 227.0 169.5 25 26 0.011 14 5.8 0.6 6 24 783 801 780 804 0.89 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZFP62-207 - 867 6.3e-69 227.0 169.5 26 26 1.1e-06 0.0014 18.6 0.7 2 24 807 829 807 832 0.96 C2H2-type zinc finger zf-C2H2_jaz PF12171.8 27 ZFP62-207 - 867 3.9e-45 151.3 102.6 1 26 0.033 42 4.6 1.0 2 20 108 126 107 127 0.88 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZFP62-207 - 867 3.9e-45 151.3 102.6 2 26 0.067 86 3.6 0.0 2 22 136 156 135 156 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZFP62-207 - 867 3.9e-45 151.3 102.6 3 26 0.035 44 4.5 0.9 2 24 164 186 163 187 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZFP62-207 - 867 3.9e-45 151.3 102.6 4 26 0.0013 1.7 9.0 0.4 4 22 194 212 193 212 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZFP62-207 - 867 3.9e-45 151.3 102.6 5 26 0.0058 7.4 7.0 0.0 2 22 220 240 219 240 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZFP62-207 - 867 3.9e-45 151.3 102.6 6 26 4.5e-05 0.057 13.7 0.0 2 22 248 268 247 268 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZFP62-207 - 867 3.9e-45 151.3 102.6 7 26 0.0013 1.7 9.0 0.2 2 21 276 295 275 296 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZFP62-207 - 867 3.9e-45 151.3 102.6 8 26 0.0071 9.1 6.7 0.7 2 20 304 322 303 323 0.88 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZFP62-207 - 867 3.9e-45 151.3 102.6 9 26 0.0048 6.2 7.2 0.0 2 21 332 351 331 352 0.90 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZFP62-207 - 867 3.9e-45 151.3 102.6 10 26 0.15 1.9e+02 2.5 0.1 2 12 360 370 359 380 0.81 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZFP62-207 - 867 3.9e-45 151.3 102.6 11 26 0.011 14 6.1 0.3 2 20 388 406 387 408 0.87 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZFP62-207 - 867 3.9e-45 151.3 102.6 12 26 0.00097 1.2 9.5 0.0 2 21 416 435 415 436 0.90 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZFP62-207 - 867 3.9e-45 151.3 102.6 13 26 7.2e-05 0.093 13.1 0.1 2 21 444 463 443 463 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZFP62-207 - 867 3.9e-45 151.3 102.6 14 26 0.00015 0.19 12.0 1.2 2 22 472 492 471 492 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZFP62-207 - 867 3.9e-45 151.3 102.6 15 26 0.0096 12 6.3 0.0 4 22 502 520 499 520 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZFP62-207 - 867 3.9e-45 151.3 102.6 16 26 0.00062 0.79 10.1 0.1 2 21 528 547 527 548 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZFP62-207 - 867 3.9e-45 151.3 102.6 17 26 0.00013 0.17 12.2 0.5 2 22 556 576 555 576 0.95 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZFP62-207 - 867 3.9e-45 151.3 102.6 18 26 0.011 14 6.1 0.2 2 20 584 602 583 604 0.76 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZFP62-207 - 867 3.9e-45 151.3 102.6 19 26 0.00092 1.2 9.5 0.2 2 22 612 632 611 632 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZFP62-207 - 867 3.9e-45 151.3 102.6 20 26 6.1e-06 0.0078 16.5 0.2 2 24 640 662 639 663 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZFP62-207 - 867 3.9e-45 151.3 102.6 21 26 0.0024 3 8.2 0.1 2 22 668 688 667 688 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZFP62-207 - 867 3.9e-45 151.3 102.6 22 26 0.0015 1.9 8.9 0.1 2 21 696 715 695 716 0.90 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZFP62-207 - 867 3.9e-45 151.3 102.6 23 26 0.33 4.2e+02 1.4 0.0 2 22 724 744 723 744 0.86 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZFP62-207 - 867 3.9e-45 151.3 102.6 24 26 7.7e-05 0.098 13.0 0.2 2 21 752 771 751 772 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZFP62-207 - 867 3.9e-45 151.3 102.6 25 26 0.11 1.4e+02 2.9 0.2 6 22 783 799 782 799 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZFP62-207 - 867 3.9e-45 151.3 102.6 26 26 0.023 30 5.1 0.3 2 24 807 829 806 829 0.92 Zinc-finger double-stranded RNA-binding Zn-ribbon_8 PF09723.10 40 ZFP62-207 - 867 5.3e-11 42.5 130.3 1 22 0.00099 1.3 9.2 3.5 7 36 109 145 106 147 0.87 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZFP62-207 - 867 5.3e-11 42.5 130.3 2 22 9.5e-05 0.12 12.5 4.0 6 34 136 171 134 175 0.87 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZFP62-207 - 867 5.3e-11 42.5 130.3 3 22 0.038 49 4.2 6.3 6 34 164 199 163 202 0.78 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZFP62-207 - 867 5.3e-11 42.5 130.3 4 22 0.0031 4 7.7 4.2 7 36 193 229 191 232 0.86 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZFP62-207 - 867 5.3e-11 42.5 130.3 5 22 0.0025 3.1 8.0 3.8 6 34 220 255 218 256 0.88 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZFP62-207 - 867 5.3e-11 42.5 130.3 6 22 0.00014 0.18 11.9 2.3 6 34 248 283 246 287 0.88 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZFP62-207 - 867 5.3e-11 42.5 130.3 7 22 0.00078 1 9.6 4.0 6 36 304 341 303 343 0.82 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZFP62-207 - 867 5.3e-11 42.5 130.3 8 22 9e-05 0.11 12.6 1.4 6 34 360 395 358 400 0.81 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZFP62-207 - 867 5.3e-11 42.5 130.3 9 22 0.00034 0.44 10.7 0.5 6 34 416 451 415 456 0.86 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZFP62-207 - 867 5.3e-11 42.5 130.3 10 22 0.015 19 5.5 3.9 6 36 472 509 471 512 0.84 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZFP62-207 - 867 5.3e-11 42.5 130.3 11 22 0.012 15 5.8 5.6 6 34 500 535 496 537 0.86 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZFP62-207 - 867 5.3e-11 42.5 130.3 12 22 0.25 3.2e+02 1.6 5.5 6 32 528 561 527 564 0.61 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZFP62-207 - 867 5.3e-11 42.5 130.3 13 22 3.7 4.8e+03 -2.2 5.3 6 32 556 589 554 592 0.57 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZFP62-207 - 867 5.3e-11 42.5 130.3 14 22 0.095 1.2e+02 2.9 5.2 6 34 584 619 583 623 0.82 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZFP62-207 - 867 5.3e-11 42.5 130.3 15 22 0.0028 3.5 7.8 3.0 6 34 612 647 611 651 0.86 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZFP62-207 - 867 5.3e-11 42.5 130.3 16 22 0.15 1.9e+02 2.3 3.7 6 34 640 675 639 681 0.68 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZFP62-207 - 867 5.3e-11 42.5 130.3 17 22 0.51 6.5e+02 0.6 0.5 8 15 670 677 667 687 0.80 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZFP62-207 - 867 5.3e-11 42.5 130.3 18 22 0.00032 0.4 10.8 1.6 6 36 696 733 695 735 0.85 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZFP62-207 - 867 5.3e-11 42.5 130.3 19 22 0.00024 0.31 11.2 2.3 6 34 724 759 723 763 0.89 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZFP62-207 - 867 5.3e-11 42.5 130.3 20 22 0.36 4.6e+02 1.0 3.9 6 29 752 782 751 794 0.62 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZFP62-207 - 867 5.3e-11 42.5 130.3 21 22 2.2 2.9e+03 -1.5 0.1 6 16 780 789 779 801 0.76 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZFP62-207 - 867 5.3e-11 42.5 130.3 22 22 0.00089 1.1 9.4 0.1 6 20 807 821 806 829 0.81 Zinc ribbon domain XPA_N PF01286.18 32 ZFP62-207 - 867 7.1e-10 38.8 129.8 1 26 0.0027 3.5 7.7 0.2 3 12 109 118 108 126 0.80 XPA protein N-terminal XPA_N PF01286.18 32 ZFP62-207 - 867 7.1e-10 38.8 129.8 2 26 0.074 95 3.2 0.3 3 14 137 148 135 150 0.89 XPA protein N-terminal XPA_N PF01286.18 32 ZFP62-207 - 867 7.1e-10 38.8 129.8 3 26 0.032 40 4.4 0.0 3 11 165 173 163 180 0.86 XPA protein N-terminal XPA_N PF01286.18 32 ZFP62-207 - 867 7.1e-10 38.8 129.8 4 26 0.0061 7.8 6.6 1.6 3 14 193 204 192 210 0.86 XPA protein N-terminal XPA_N PF01286.18 32 ZFP62-207 - 867 7.1e-10 38.8 129.8 5 26 0.011 14 5.8 0.1 3 14 221 232 219 233 0.91 XPA protein N-terminal XPA_N PF01286.18 32 ZFP62-207 - 867 7.1e-10 38.8 129.8 6 26 0.025 32 4.7 0.3 3 14 249 260 247 261 0.91 XPA protein N-terminal XPA_N PF01286.18 32 ZFP62-207 - 867 7.1e-10 38.8 129.8 7 26 0.0075 9.7 6.3 1.0 3 12 277 286 275 289 0.88 XPA protein N-terminal XPA_N PF01286.18 32 ZFP62-207 - 867 7.1e-10 38.8 129.8 8 26 0.0012 1.5 8.9 0.5 3 17 305 319 303 323 0.89 XPA protein N-terminal XPA_N PF01286.18 32 ZFP62-207 - 867 7.1e-10 38.8 129.8 9 26 0.0011 1.3 9.1 0.3 3 14 333 344 331 345 0.91 XPA protein N-terminal XPA_N PF01286.18 32 ZFP62-207 - 867 7.1e-10 38.8 129.8 10 26 0.049 63 3.7 0.1 3 14 361 372 359 373 0.86 XPA protein N-terminal XPA_N PF01286.18 32 ZFP62-207 - 867 7.1e-10 38.8 129.8 11 26 0.0041 5.3 7.2 0.3 2 17 388 404 387 406 0.74 XPA protein N-terminal XPA_N PF01286.18 32 ZFP62-207 - 867 7.1e-10 38.8 129.8 12 26 0.12 1.6e+02 2.5 0.1 3 11 417 425 415 427 0.72 XPA protein N-terminal XPA_N PF01286.18 32 ZFP62-207 - 867 7.1e-10 38.8 129.8 13 26 0.91 1.2e+03 -0.3 0.1 3 9 445 451 443 454 0.70 XPA protein N-terminal XPA_N PF01286.18 32 ZFP62-207 - 867 7.1e-10 38.8 129.8 14 26 0.62 7.9e+02 0.2 0.1 3 14 473 484 471 487 0.86 XPA protein N-terminal XPA_N PF01286.18 32 ZFP62-207 - 867 7.1e-10 38.8 129.8 15 26 0.016 21 5.3 0.3 4 12 502 510 501 512 0.90 XPA protein N-terminal XPA_N PF01286.18 32 ZFP62-207 - 867 7.1e-10 38.8 129.8 16 26 0.054 69 3.6 0.1 3 10 529 536 527 542 0.89 XPA protein N-terminal XPA_N PF01286.18 32 ZFP62-207 - 867 7.1e-10 38.8 129.8 17 26 0.011 14 5.8 0.4 3 12 557 566 555 568 0.89 XPA protein N-terminal XPA_N PF01286.18 32 ZFP62-207 - 867 7.1e-10 38.8 129.8 18 26 0.095 1.2e+02 2.8 0.3 3 17 585 599 583 602 0.75 XPA protein N-terminal XPA_N PF01286.18 32 ZFP62-207 - 867 7.1e-10 38.8 129.8 19 26 0.43 5.5e+02 0.7 0.2 3 11 613 621 611 624 0.82 XPA protein N-terminal XPA_N PF01286.18 32 ZFP62-207 - 867 7.1e-10 38.8 129.8 20 26 0.98 1.3e+03 -0.4 0.1 3 9 641 647 639 650 0.65 XPA protein N-terminal XPA_N PF01286.18 32 ZFP62-207 - 867 7.1e-10 38.8 129.8 21 26 0.0014 1.8 8.7 0.2 3 14 669 680 667 683 0.87 XPA protein N-terminal XPA_N PF01286.18 32 ZFP62-207 - 867 7.1e-10 38.8 129.8 22 26 0.0011 1.4 9.0 0.5 3 18 697 712 695 715 0.89 XPA protein N-terminal XPA_N PF01286.18 32 ZFP62-207 - 867 7.1e-10 38.8 129.8 23 26 0.014 18 5.5 0.1 3 14 725 736 723 737 0.88 XPA protein N-terminal XPA_N PF01286.18 32 ZFP62-207 - 867 7.1e-10 38.8 129.8 24 26 0.045 58 3.8 0.1 3 10 753 760 751 769 0.88 XPA protein N-terminal XPA_N PF01286.18 32 ZFP62-207 - 867 7.1e-10 38.8 129.8 25 26 7.2 9.3e+03 -3.2 0.8 6 11 783 788 782 789 0.87 XPA protein N-terminal XPA_N PF01286.18 32 ZFP62-207 - 867 7.1e-10 38.8 129.8 26 26 0.029 37 4.5 0.0 3 11 808 816 806 822 0.90 XPA protein N-terminal zf_UBZ PF18439.1 32 ZFP62-207 - 867 3.3e-07 29.8 108.2 1 25 0.008 10 5.8 0.2 3 14 108 119 106 127 0.79 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZFP62-207 - 867 3.3e-07 29.8 108.2 2 25 0.076 97 2.7 0.1 2 14 135 147 134 154 0.79 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZFP62-207 - 867 3.3e-07 29.8 108.2 3 25 0.025 32 4.2 0.2 3 10 164 171 162 178 0.88 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZFP62-207 - 867 3.3e-07 29.8 108.2 4 25 0.017 22 4.8 0.7 4 15 193 204 190 211 0.76 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZFP62-207 - 867 3.3e-07 29.8 108.2 5 25 0.1 1.3e+02 2.3 0.1 3 12 220 229 218 233 0.86 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZFP62-207 - 867 3.3e-07 29.8 108.2 6 25 0.016 21 4.8 0.1 3 14 248 259 246 263 0.87 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZFP62-207 - 867 3.3e-07 29.8 108.2 7 25 0.017 22 4.8 0.4 3 12 276 285 274 294 0.88 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZFP62-207 - 867 3.3e-07 29.8 108.2 8 25 0.016 20 4.9 0.2 3 14 304 315 302 323 0.79 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZFP62-207 - 867 3.3e-07 29.8 108.2 9 25 0.016 20 4.9 0.2 3 12 332 341 330 345 0.86 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZFP62-207 - 867 3.3e-07 29.8 108.2 10 25 0.12 1.5e+02 2.1 0.1 3 13 360 370 358 375 0.87 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZFP62-207 - 867 3.3e-07 29.8 108.2 11 25 0.012 16 5.2 0.1 4 16 389 402 386 407 0.76 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZFP62-207 - 867 3.3e-07 29.8 108.2 12 25 0.06 77 3.0 0.1 3 12 416 425 414 429 0.89 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZFP62-207 - 867 3.3e-07 29.8 108.2 13 25 0.26 3.4e+02 1.0 0.1 3 11 444 452 442 463 0.78 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZFP62-207 - 867 3.3e-07 29.8 108.2 14 25 0.11 1.5e+02 2.1 0.2 3 20 472 490 470 491 0.84 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZFP62-207 - 867 3.3e-07 29.8 108.2 15 25 0.087 1.1e+02 2.5 0.1 4 12 501 509 498 512 0.84 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZFP62-207 - 867 3.3e-07 29.8 108.2 16 25 0.016 21 4.8 0.1 3 11 528 536 526 547 0.80 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZFP62-207 - 867 3.3e-07 29.8 108.2 17 25 0.07 90 2.8 0.1 3 13 556 566 554 575 0.80 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZFP62-207 - 867 3.3e-07 29.8 108.2 18 25 0.31 3.9e+02 0.7 0.1 3 15 584 596 582 602 0.79 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZFP62-207 - 867 3.3e-07 29.8 108.2 19 25 0.031 39 3.9 0.2 3 12 612 621 610 628 0.86 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZFP62-207 - 867 3.3e-07 29.8 108.2 20 25 0.23 2.9e+02 1.2 0.1 3 15 640 652 638 659 0.75 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZFP62-207 - 867 3.3e-07 29.8 108.2 21 25 0.0083 11 5.8 0.1 3 20 668 686 666 687 0.75 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZFP62-207 - 867 3.3e-07 29.8 108.2 22 25 0.024 31 4.3 0.1 3 16 696 710 694 715 0.77 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZFP62-207 - 867 3.3e-07 29.8 108.2 23 25 0.0024 3.1 7.5 0.1 3 12 724 733 722 738 0.87 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZFP62-207 - 867 3.3e-07 29.8 108.2 24 25 0.01 13 5.5 0.2 3 15 752 764 750 771 0.75 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZFP62-207 - 867 3.3e-07 29.8 108.2 25 25 0.039 50 3.6 0.1 3 15 807 819 805 826 0.78 Ubiquitin-Binding Zinc Finger zf-met PF12874.7 25 ZFP62-207 - 867 6.3e-07 29.6 152.2 1 26 0.5 6.4e+02 1.0 0.7 2 19 109 126 108 127 0.84 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZFP62-207 - 867 6.3e-07 29.6 152.2 2 26 0.18 2.3e+02 2.3 0.1 1 21 136 156 136 159 0.89 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZFP62-207 - 867 6.3e-07 29.6 152.2 3 26 0.83 1.1e+03 0.3 1.2 1 20 164 183 164 186 0.88 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZFP62-207 - 867 6.3e-07 29.6 152.2 4 26 0.0016 2.1 8.9 0.7 3 21 194 212 193 215 0.91 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZFP62-207 - 867 6.3e-07 29.6 152.2 5 26 0.28 3.6e+02 1.7 0.1 1 21 220 240 220 243 0.89 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZFP62-207 - 867 6.3e-07 29.6 152.2 6 26 0.00017 0.22 11.9 0.2 1 21 248 268 248 271 0.90 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZFP62-207 - 867 6.3e-07 29.6 152.2 7 26 6.7 8.6e+03 -2.6 0.2 1 10 276 285 276 287 0.83 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZFP62-207 - 867 6.3e-07 29.6 152.2 8 26 0.0039 5 7.7 1.1 1 19 304 322 304 326 0.94 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZFP62-207 - 867 6.3e-07 29.6 152.2 9 26 0.27 3.4e+02 1.8 0.1 1 21 332 352 332 355 0.88 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZFP62-207 - 867 6.3e-07 29.6 152.2 10 26 0.065 83 3.8 0.2 1 19 360 378 360 382 0.81 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZFP62-207 - 867 6.3e-07 29.6 152.2 11 26 0.035 45 4.6 0.6 2 19 389 406 388 408 0.94 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZFP62-207 - 867 6.3e-07 29.6 152.2 12 26 0.00087 1.1 9.7 0.0 1 19 416 434 416 436 0.92 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZFP62-207 - 867 6.3e-07 29.6 152.2 13 26 0.00013 0.17 12.3 0.1 1 19 444 462 444 465 0.95 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZFP62-207 - 867 6.3e-07 29.6 152.2 14 26 0.0022 2.8 8.4 2.5 1 21 472 492 472 495 0.90 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZFP62-207 - 867 6.3e-07 29.6 152.2 15 26 0.41 5.2e+02 1.2 0.1 3 21 502 520 500 523 0.88 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZFP62-207 - 867 6.3e-07 29.6 152.2 16 26 0.027 34 5.0 0.2 1 19 528 546 528 549 0.94 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZFP62-207 - 867 6.3e-07 29.6 152.2 17 26 5 6.4e+03 -2.2 0.4 1 10 556 565 556 567 0.85 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZFP62-207 - 867 6.3e-07 29.6 152.2 18 26 0.00086 1.1 9.7 0.9 1 19 584 602 584 606 0.91 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZFP62-207 - 867 6.3e-07 29.6 152.2 19 26 0.00073 0.94 10.0 0.6 1 21 612 632 612 635 0.91 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZFP62-207 - 867 6.3e-07 29.6 152.2 20 26 0.00096 1.2 9.6 1.2 1 20 640 659 640 662 0.93 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZFP62-207 - 867 6.3e-07 29.6 152.2 21 26 0.14 1.8e+02 2.7 0.5 2 21 669 688 668 690 0.90 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZFP62-207 - 867 6.3e-07 29.6 152.2 22 26 0.037 48 4.5 1.2 1 21 696 716 696 719 0.91 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZFP62-207 - 867 6.3e-07 29.6 152.2 23 26 1.4 1.8e+03 -0.4 0.1 1 19 724 742 724 746 0.79 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZFP62-207 - 867 6.3e-07 29.6 152.2 24 26 0.026 34 5.0 1.0 1 20 752 771 752 774 0.93 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZFP62-207 - 867 6.3e-07 29.6 152.2 25 26 0.0086 11 6.6 0.1 6 21 784 799 783 802 0.91 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZFP62-207 - 867 6.3e-07 29.6 152.2 26 26 1.2 1.5e+03 -0.2 0.5 1 21 807 827 807 830 0.81 Zinc-finger of C2H2 type # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFP62-207.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFP62-207.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFP62-207.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFP62-207.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFP62-207.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:58:50 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZFP64-201 - 681 4e-43 144.0 75.9 1 11 3.5e-10 5.7e-07 29.7 3.0 2 25 162 185 161 186 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZFP64-201 - 681 4e-43 144.0 75.9 2 11 1.2e-09 1.9e-06 28.0 3.1 2 24 190 212 189 213 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZFP64-201 - 681 4e-43 144.0 75.9 3 11 2.7e-08 4.4e-05 23.7 0.3 1 24 217 240 217 242 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZFP64-201 - 681 4e-43 144.0 75.9 4 11 2.3e-09 3.7e-06 27.1 0.1 2 25 246 269 245 269 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZFP64-201 - 681 4e-43 144.0 75.9 5 11 8.8e-11 1.4e-07 31.6 2.5 1 22 273 294 273 297 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZFP64-201 - 681 4e-43 144.0 75.9 6 11 3.7e-06 0.006 17.0 0.6 1 21 301 321 301 325 0.87 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZFP64-201 - 681 4e-43 144.0 75.9 7 11 0.00015 0.24 11.9 4.0 2 25 330 353 329 354 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZFP64-201 - 681 4e-43 144.0 75.9 8 11 0.00056 0.91 10.1 1.7 1 25 357 381 357 382 0.90 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZFP64-201 - 681 4e-43 144.0 75.9 9 11 0.031 51 4.5 0.1 1 11 385 395 385 404 0.85 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZFP64-201 - 681 4e-43 144.0 75.9 10 11 0.066 1.1e+02 3.5 0.1 12 24 422 434 416 434 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZFP64-201 - 681 4e-43 144.0 75.9 11 11 0.74 1.2e+03 0.2 0.2 1 10 439 448 439 454 0.85 Zinc-finger double domain zf-H2C2_5 PF13909.6 26 ZFP64-201 - 681 3.4e-39 132.2 71.5 1 10 0.00023 0.37 10.6 0.1 6 26 151 171 151 171 0.76 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 ZFP64-201 - 681 3.4e-39 132.2 71.5 2 10 0.0058 9.4 6.1 0.8 12 26 186 199 185 199 0.92 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 ZFP64-201 - 681 3.4e-39 132.2 71.5 3 10 1.7e-09 2.7e-06 27.0 1.7 1 25 203 226 203 227 0.98 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 ZFP64-201 - 681 3.4e-39 132.2 71.5 4 10 4e-07 0.00066 19.4 0.3 1 26 231 255 231 255 0.98 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 ZFP64-201 - 681 3.4e-39 132.2 71.5 5 10 1.6e-05 0.026 14.3 0.1 13 26 271 283 259 283 0.87 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 ZFP64-201 - 681 3.4e-39 132.2 71.5 6 10 5.5e-07 0.00089 19.0 1.0 1 26 287 312 287 312 0.98 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 ZFP64-201 - 681 3.4e-39 132.2 71.5 7 10 1.4e-10 2.3e-07 30.4 1.3 1 24 315 337 315 339 0.97 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 ZFP64-201 - 681 3.4e-39 132.2 71.5 8 10 1.3e-05 0.022 14.5 4.8 2 24 344 365 344 367 0.95 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 ZFP64-201 - 681 3.4e-39 132.2 71.5 9 10 1.1e-11 1.8e-08 34.0 2.7 1 24 371 394 371 395 0.95 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 ZFP64-201 - 681 3.4e-39 132.2 71.5 10 10 0.57 9.4e+02 -0.3 1.4 1 25 425 448 425 449 0.87 C2H2-type zinc-finger domain zf-C2H2 PF00096.26 23 ZFP64-201 - 681 7.4e-33 111.2 90.1 1 11 0.0012 2 9.0 0.1 1 21 31 51 31 52 0.91 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZFP64-201 - 681 7.4e-33 111.2 90.1 2 11 1.3 2.1e+03 -0.5 0.2 14 23 160 169 146 169 0.74 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZFP64-201 - 681 7.4e-33 111.2 90.1 3 11 1.8e-06 0.0029 18.0 8.5 1 21 175 195 175 197 0.95 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZFP64-201 - 681 7.4e-33 111.2 90.1 4 11 9.9e-07 0.0016 18.8 0.3 1 23 203 225 203 225 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZFP64-201 - 681 7.4e-33 111.2 90.1 5 11 3.3e-07 0.00054 20.3 0.7 1 23 231 253 231 253 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZFP64-201 - 681 7.4e-33 111.2 90.1 6 11 2.9e-07 0.00047 20.5 0.8 1 23 259 281 259 281 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZFP64-201 - 681 7.4e-33 111.2 90.1 7 11 1.7e-05 0.028 14.9 3.0 1 23 287 310 287 310 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZFP64-201 - 681 7.4e-33 111.2 90.1 8 11 0.00022 0.37 11.4 1.9 1 23 315 337 315 337 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZFP64-201 - 681 7.4e-33 111.2 90.1 9 11 4.4e-05 0.071 13.6 1.6 2 23 344 365 344 365 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZFP64-201 - 681 7.4e-33 111.2 90.1 10 11 2.1e-07 0.00035 20.9 3.6 1 23 371 394 371 394 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZFP64-201 - 681 7.4e-33 111.2 90.1 11 11 1.1e-05 0.018 15.4 2.1 1 23 425 447 425 447 0.97 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZFP64-201 - 681 1.3e-20 72.3 88.2 1 11 0.0012 2 9.5 0.1 1 21 31 51 31 52 0.91 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZFP64-201 - 681 1.3e-20 72.3 88.2 2 11 0.051 83 4.4 0.6 3 23 146 169 144 170 0.86 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZFP64-201 - 681 1.3e-20 72.3 88.2 3 11 7.7e-05 0.12 13.2 7.4 1 21 175 195 175 197 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZFP64-201 - 681 1.3e-20 72.3 88.2 4 11 0.0014 2.3 9.3 0.3 1 23 203 225 203 226 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZFP64-201 - 681 1.3e-20 72.3 88.2 5 11 0.00011 0.17 12.8 0.7 1 23 231 253 231 254 0.79 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZFP64-201 - 681 1.3e-20 72.3 88.2 6 11 0.00023 0.37 11.8 1.2 1 23 259 281 259 282 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZFP64-201 - 681 1.3e-20 72.3 88.2 7 11 0.00043 0.71 10.9 2.4 1 24 287 310 287 310 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZFP64-201 - 681 1.3e-20 72.3 88.2 8 11 0.00041 0.67 10.9 1.3 1 23 315 337 315 338 0.87 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZFP64-201 - 681 1.3e-20 72.3 88.2 9 11 0.0011 1.9 9.6 1.9 2 23 344 365 344 365 0.91 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZFP64-201 - 681 1.3e-20 72.3 88.2 10 11 1.3e-05 0.022 15.6 2.6 1 24 371 394 371 394 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZFP64-201 - 681 1.3e-20 72.3 88.2 11 11 5.7e-06 0.0093 16.7 1.5 1 23 425 447 425 448 0.95 C2H2-type zinc finger # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFP64-201.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFP64-201.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFP64-201.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFP64-201.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFP64-201.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:58:51 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZFP64-202 - 627 2.3e-43 144.7 76.5 1 11 3.2e-10 5.2e-07 29.8 3.0 2 25 108 131 107 132 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZFP64-202 - 627 2.3e-43 144.7 76.5 2 11 1.1e-09 1.8e-06 28.1 3.1 2 24 136 158 135 159 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZFP64-202 - 627 2.3e-43 144.7 76.5 3 11 2.4e-08 4e-05 23.9 0.3 1 24 163 186 163 188 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZFP64-202 - 627 2.3e-43 144.7 76.5 4 11 2.1e-09 3.4e-06 27.2 0.1 2 25 192 215 191 215 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZFP64-202 - 627 2.3e-43 144.7 76.5 5 11 8e-11 1.3e-07 31.7 2.5 1 22 219 240 219 243 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZFP64-202 - 627 2.3e-43 144.7 76.5 6 11 3.3e-06 0.0054 17.1 0.6 1 21 247 267 247 271 0.87 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZFP64-202 - 627 2.3e-43 144.7 76.5 7 11 0.00013 0.22 12.0 4.0 2 25 276 299 275 300 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZFP64-202 - 627 2.3e-43 144.7 76.5 8 11 0.00051 0.83 10.2 1.7 1 25 303 327 303 328 0.90 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZFP64-202 - 627 2.3e-43 144.7 76.5 9 11 0.029 47 4.7 0.1 1 11 331 341 331 350 0.85 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZFP64-202 - 627 2.3e-43 144.7 76.5 10 11 0.064 1e+02 3.6 0.2 12 24 368 380 363 380 0.90 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZFP64-202 - 627 2.3e-43 144.7 76.5 11 11 0.67 1.1e+03 0.3 0.2 1 10 385 394 385 400 0.85 Zinc-finger double domain zf-H2C2_5 PF13909.6 26 ZFP64-202 - 627 1.4e-39 133.4 71.5 1 10 0.00021 0.34 10.7 0.1 6 26 97 117 97 117 0.76 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 ZFP64-202 - 627 1.4e-39 133.4 71.5 2 10 0.0053 8.6 6.2 0.8 12 26 132 145 131 145 0.92 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 ZFP64-202 - 627 1.4e-39 133.4 71.5 3 10 1.5e-09 2.5e-06 27.1 1.7 1 25 149 172 149 173 0.98 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 ZFP64-202 - 627 1.4e-39 133.4 71.5 4 10 3.7e-07 0.0006 19.5 0.3 1 26 177 201 177 201 0.98 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 ZFP64-202 - 627 1.4e-39 133.4 71.5 5 10 1.5e-05 0.024 14.4 0.1 13 26 217 229 205 229 0.87 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 ZFP64-202 - 627 1.4e-39 133.4 71.5 6 10 5e-07 0.00081 19.1 1.0 1 26 233 258 233 258 0.98 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 ZFP64-202 - 627 1.4e-39 133.4 71.5 7 10 1.3e-10 2.1e-07 30.6 1.3 1 24 261 283 261 285 0.97 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 ZFP64-202 - 627 1.4e-39 133.4 71.5 8 10 1.2e-05 0.02 14.6 4.8 2 24 290 311 290 313 0.95 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 ZFP64-202 - 627 1.4e-39 133.4 71.5 9 10 9.9e-12 1.6e-08 34.1 2.7 1 24 317 340 317 341 0.95 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 ZFP64-202 - 627 1.4e-39 133.4 71.5 10 10 0.52 8.5e+02 -0.2 1.4 1 25 371 394 371 395 0.87 C2H2-type zinc-finger domain zf-C2H2 PF00096.26 23 ZFP64-202 - 627 1.2e-33 113.7 88.6 1 11 0.0011 1.8 9.2 0.1 1 21 31 51 31 52 0.91 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZFP64-202 - 627 1.2e-33 113.7 88.6 2 11 1.6 2.7e+03 -0.8 0.1 15 23 107 115 99 115 0.88 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZFP64-202 - 627 1.2e-33 113.7 88.6 3 11 1.6e-06 0.0027 18.1 8.5 1 21 121 141 121 143 0.95 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZFP64-202 - 627 1.2e-33 113.7 88.6 4 11 9e-07 0.0015 18.9 0.3 1 23 149 171 149 171 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZFP64-202 - 627 1.2e-33 113.7 88.6 5 11 3e-07 0.00049 20.4 0.7 1 23 177 199 177 199 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZFP64-202 - 627 1.2e-33 113.7 88.6 6 11 2.6e-07 0.00042 20.6 0.8 1 23 205 227 205 227 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZFP64-202 - 627 1.2e-33 113.7 88.6 7 11 1.5e-05 0.025 15.0 3.0 1 23 233 256 233 256 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZFP64-202 - 627 1.2e-33 113.7 88.6 8 11 0.0002 0.33 11.5 1.9 1 23 261 283 261 283 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZFP64-202 - 627 1.2e-33 113.7 88.6 9 11 4e-05 0.064 13.7 1.6 2 23 290 311 290 311 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZFP64-202 - 627 1.2e-33 113.7 88.6 10 11 1.9e-07 0.00032 21.0 3.6 1 23 317 340 317 340 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZFP64-202 - 627 1.2e-33 113.7 88.6 11 11 1e-05 0.017 15.6 2.1 1 23 371 393 371 393 0.97 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZFP64-202 - 627 2.4e-21 74.6 84.5 1 11 0.0011 1.8 9.6 0.1 1 21 31 51 31 52 0.91 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZFP64-202 - 627 2.4e-21 74.6 84.5 2 11 0.28 4.5e+02 2.1 0.1 6 23 97 115 95 116 0.82 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZFP64-202 - 627 2.4e-21 74.6 84.5 3 11 7e-05 0.11 13.4 7.4 1 21 121 141 121 143 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZFP64-202 - 627 2.4e-21 74.6 84.5 4 11 0.0013 2.1 9.4 0.3 1 23 149 171 149 172 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZFP64-202 - 627 2.4e-21 74.6 84.5 5 11 9.7e-05 0.16 12.9 0.7 1 23 177 199 177 200 0.79 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZFP64-202 - 627 2.4e-21 74.6 84.5 6 11 0.00021 0.34 11.9 1.2 1 23 205 227 205 228 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZFP64-202 - 627 2.4e-21 74.6 84.5 7 11 0.00039 0.64 11.0 2.4 1 24 233 256 233 256 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZFP64-202 - 627 2.4e-21 74.6 84.5 8 11 0.00037 0.61 11.1 1.3 1 23 261 283 261 284 0.87 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZFP64-202 - 627 2.4e-21 74.6 84.5 9 11 0.001 1.7 9.7 1.9 2 23 290 311 290 311 0.91 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZFP64-202 - 627 2.4e-21 74.6 84.5 10 11 1.2e-05 0.02 15.7 2.6 1 24 317 340 317 340 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZFP64-202 - 627 2.4e-21 74.6 84.5 11 11 5.2e-06 0.0084 16.9 1.5 1 23 371 393 371 394 0.95 C2H2-type zinc finger # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFP64-202.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFP64-202.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFP64-202.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFP64-202.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFP64-202.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:58:51 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZFP64-203 - 645 6.5e-60 197.1 107.5 1 14 3.6e-10 5.3e-07 29.8 3.0 2 25 162 185 161 186 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZFP64-203 - 645 6.5e-60 197.1 107.5 2 14 1.2e-09 1.8e-06 28.1 3.1 2 24 190 212 189 213 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZFP64-203 - 645 6.5e-60 197.1 107.5 3 14 2.7e-08 4.1e-05 23.8 0.3 1 24 217 240 217 242 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZFP64-203 - 645 6.5e-60 197.1 107.5 4 14 0.36 5.3e+02 1.3 0.0 2 10 246 254 245 264 0.86 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZFP64-203 - 645 6.5e-60 197.1 107.5 5 14 1.7e-11 2.6e-08 33.9 3.1 1 25 316 340 316 341 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZFP64-203 - 645 6.5e-60 197.1 107.5 6 14 7.4e-09 1.1e-05 25.6 4.0 1 24 344 367 344 368 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZFP64-203 - 645 6.5e-60 197.1 107.5 7 14 7.7e-09 1.1e-05 25.6 0.8 1 24 372 395 372 397 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZFP64-203 - 645 6.5e-60 197.1 107.5 8 14 3.1e-10 4.7e-07 30.0 0.1 2 25 401 424 400 424 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZFP64-203 - 645 6.5e-60 197.1 107.5 9 14 2.5e-10 3.7e-07 30.3 1.3 1 22 428 449 428 452 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZFP64-203 - 645 6.5e-60 197.1 107.5 10 14 0.011 17 6.1 1.4 1 21 456 473 456 476 0.85 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZFP64-203 - 645 6.5e-60 197.1 107.5 11 14 0.0042 6.3 7.4 1.5 2 25 482 505 481 506 0.84 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZFP64-203 - 645 6.5e-60 197.1 107.5 12 14 7.7e-06 0.011 16.1 2.6 1 25 509 533 509 534 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZFP64-203 - 645 6.5e-60 197.1 107.5 13 14 9.5 1.4e+04 -3.2 0.0 2 10 538 547 537 550 0.71 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZFP64-203 - 645 6.5e-60 197.1 107.5 14 14 0.038 56 4.4 0.0 12 25 577 590 567 591 0.73 Zinc-finger double domain zf-H2C2_5 PF13909.6 26 ZFP64-203 - 645 1.3e-41 139.9 104.6 1 13 0.00024 0.35 10.7 0.1 6 26 151 171 151 171 0.76 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 ZFP64-203 - 645 1.3e-41 139.9 104.6 2 13 0.006 8.9 6.2 0.8 12 26 186 199 185 199 0.92 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 ZFP64-203 - 645 1.3e-41 139.9 104.6 3 13 1.7e-09 2.6e-06 27.1 1.7 1 25 203 226 203 227 0.98 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 ZFP64-203 - 645 1.3e-41 139.9 104.6 4 13 2.1e-06 0.0032 17.2 0.4 1 25 231 254 231 255 0.97 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 ZFP64-203 - 645 1.3e-41 139.9 104.6 5 13 0.0008 1.2 9.0 1.6 14 26 315 326 306 326 0.80 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 ZFP64-203 - 645 1.3e-41 139.9 104.6 6 13 0.023 34 4.3 10.0 1 25 330 353 330 354 0.95 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 ZFP64-203 - 645 1.3e-41 139.9 104.6 7 13 5.3e-08 8e-05 22.3 3.9 1 25 358 381 358 382 0.96 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 ZFP64-203 - 645 1.3e-41 139.9 104.6 8 13 2e-07 0.00029 20.5 0.8 1 26 386 410 386 410 0.99 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 ZFP64-203 - 645 1.3e-41 139.9 104.6 9 13 0.00074 1.1 9.1 0.0 13 26 426 438 414 438 0.87 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 ZFP64-203 - 645 1.3e-41 139.9 104.6 10 13 3.4e-07 0.0005 19.8 2.1 1 25 442 466 442 466 0.97 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 ZFP64-203 - 645 1.3e-41 139.9 104.6 11 13 0.00069 1 9.2 0.3 1 24 467 489 467 490 0.96 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 ZFP64-203 - 645 1.3e-41 139.9 104.6 12 13 1e-05 0.015 15.0 3.8 2 24 496 517 496 519 0.97 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 ZFP64-203 - 645 1.3e-41 139.9 104.6 13 13 7.9e-10 1.2e-06 28.2 1.0 1 25 523 547 523 548 0.97 C2H2-type zinc-finger domain zf-C2H2 PF00096.26 23 ZFP64-203 - 645 6.6e-36 120.8 129.6 1 15 0.0013 1.9 9.1 0.1 1 21 31 51 31 52 0.91 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZFP64-203 - 645 6.6e-36 120.8 129.6 2 15 1.3 1.9e+03 -0.4 0.2 14 23 160 169 146 169 0.74 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZFP64-203 - 645 6.6e-36 120.8 129.6 3 15 1.8e-06 0.0027 18.0 8.5 1 21 175 195 175 197 0.95 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZFP64-203 - 645 6.6e-36 120.8 129.6 4 15 1e-06 0.0015 18.9 0.3 1 23 203 225 203 225 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZFP64-203 - 645 6.6e-36 120.8 129.6 5 15 3.4e-07 0.00051 20.4 0.7 1 23 231 253 231 253 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZFP64-203 - 645 6.6e-36 120.8 129.6 6 15 4.8 7.1e+03 -2.2 4.2 3 23 301 324 299 324 0.77 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZFP64-203 - 645 6.6e-36 120.8 129.6 7 15 5.8e-06 0.0086 16.5 9.2 1 21 330 350 330 352 0.95 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZFP64-203 - 645 6.6e-36 120.8 129.6 8 15 5.3e-06 0.0079 16.6 2.4 1 23 358 380 358 380 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZFP64-203 - 645 6.6e-36 120.8 129.6 9 15 7e-07 0.001 19.4 0.9 1 23 386 408 386 408 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZFP64-203 - 645 6.6e-36 120.8 129.6 10 15 1.8e-06 0.0027 18.0 0.4 1 23 414 436 414 436 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZFP64-203 - 645 6.6e-36 120.8 129.6 11 15 1.3e-05 0.02 15.4 2.6 1 23 442 465 442 465 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZFP64-203 - 645 6.6e-36 120.8 129.6 12 15 0.023 34 5.1 0.9 1 23 467 489 467 489 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZFP64-203 - 645 6.6e-36 120.8 129.6 13 15 1.6e-05 0.024 15.1 0.9 2 23 496 517 496 517 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZFP64-203 - 645 6.6e-36 120.8 129.6 14 15 2.2e-05 0.033 14.6 0.9 1 23 523 546 523 546 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZFP64-203 - 645 6.6e-36 120.8 129.6 15 15 0.0013 1.9 9.1 2.6 1 23 580 602 580 602 0.94 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZFP64-203 - 645 1.1e-19 69.4 128.4 1 15 0.0013 1.9 9.5 0.1 1 21 31 51 31 52 0.91 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZFP64-203 - 645 1.1e-19 69.4 128.4 2 15 0.052 77 4.5 0.6 3 23 146 169 144 170 0.86 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZFP64-203 - 645 1.1e-19 69.4 128.4 3 15 7.8e-05 0.12 13.3 7.4 1 21 175 195 175 197 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZFP64-203 - 645 1.1e-19 69.4 128.4 4 15 0.0015 2.2 9.4 0.3 1 23 203 225 203 226 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZFP64-203 - 645 1.1e-19 69.4 128.4 5 15 0.00011 0.16 12.9 0.7 1 23 231 253 231 254 0.79 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZFP64-203 - 645 1.1e-19 69.4 128.4 6 15 0.074 1.1e+02 4.1 3.4 1 23 299 324 299 325 0.79 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZFP64-203 - 645 1.1e-19 69.4 128.4 7 15 0.0031 4.6 8.3 7.5 1 21 330 350 330 352 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZFP64-203 - 645 1.1e-19 69.4 128.4 8 15 0.0019 2.8 9.0 2.4 1 23 358 380 358 381 0.91 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZFP64-203 - 645 1.1e-19 69.4 128.4 9 15 0.00023 0.34 11.9 0.8 1 23 386 408 386 409 0.79 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZFP64-203 - 645 1.1e-19 69.4 128.4 10 15 0.00049 0.73 10.8 0.7 1 23 414 436 414 437 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZFP64-203 - 645 1.1e-19 69.4 128.4 11 15 0.00095 1.4 9.9 2.2 1 24 442 465 442 465 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZFP64-203 - 645 1.1e-19 69.4 128.4 12 15 0.045 67 4.7 0.7 1 23 467 489 467 490 0.89 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZFP64-203 - 645 1.1e-19 69.4 128.4 13 15 0.00055 0.82 10.7 1.6 2 23 496 517 496 517 0.83 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZFP64-203 - 645 1.1e-19 69.4 128.4 14 15 0.00015 0.22 12.4 1.0 1 24 523 546 523 546 0.91 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZFP64-203 - 645 1.1e-19 69.4 128.4 15 15 8.7e-05 0.13 13.2 2.4 1 23 580 602 580 603 0.95 C2H2-type zinc finger # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFP64-203.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFP64-203.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFP64-203.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFP64-203.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFP64-203.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:58:52 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZFP64-204 - 679 3.9e-43 144.0 75.9 1 11 3.5e-10 5.7e-07 29.7 3.0 2 25 160 183 159 184 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZFP64-204 - 679 3.9e-43 144.0 75.9 2 11 1.2e-09 1.9e-06 28.0 3.1 2 24 188 210 187 211 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZFP64-204 - 679 3.9e-43 144.0 75.9 3 11 2.7e-08 4.3e-05 23.7 0.3 1 24 215 238 215 240 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZFP64-204 - 679 3.9e-43 144.0 75.9 4 11 2.3e-09 3.7e-06 27.1 0.1 2 25 244 267 243 267 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZFP64-204 - 679 3.9e-43 144.0 75.9 5 11 8.7e-11 1.4e-07 31.6 2.5 1 22 271 292 271 295 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZFP64-204 - 679 3.9e-43 144.0 75.9 6 11 3.6e-06 0.0059 17.0 0.6 1 21 299 319 299 323 0.87 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZFP64-204 - 679 3.9e-43 144.0 75.9 7 11 0.00015 0.24 11.9 4.0 2 25 328 351 327 352 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZFP64-204 - 679 3.9e-43 144.0 75.9 8 11 0.00056 0.91 10.1 1.7 1 25 355 379 355 380 0.90 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZFP64-204 - 679 3.9e-43 144.0 75.9 9 11 0.031 51 4.5 0.1 1 11 383 393 383 402 0.85 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZFP64-204 - 679 3.9e-43 144.0 75.9 10 11 0.066 1.1e+02 3.5 0.1 12 24 420 432 414 432 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZFP64-204 - 679 3.9e-43 144.0 75.9 11 11 0.73 1.2e+03 0.2 0.2 1 10 437 446 437 452 0.85 Zinc-finger double domain zf-H2C2_5 PF13909.6 26 ZFP64-204 - 679 3.3e-39 132.3 71.5 1 10 0.00023 0.37 10.6 0.1 6 26 149 169 149 169 0.76 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 ZFP64-204 - 679 3.3e-39 132.3 71.5 2 10 0.0058 9.4 6.1 0.8 12 26 184 197 183 197 0.92 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 ZFP64-204 - 679 3.3e-39 132.3 71.5 3 10 1.7e-09 2.7e-06 27.0 1.7 1 25 201 224 201 225 0.98 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 ZFP64-204 - 679 3.3e-39 132.3 71.5 4 10 4e-07 0.00066 19.4 0.3 1 26 229 253 229 253 0.98 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 ZFP64-204 - 679 3.3e-39 132.3 71.5 5 10 1.6e-05 0.026 14.3 0.1 13 26 269 281 257 281 0.87 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 ZFP64-204 - 679 3.3e-39 132.3 71.5 6 10 5.5e-07 0.00089 19.0 1.0 1 26 285 310 285 310 0.98 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 ZFP64-204 - 679 3.3e-39 132.3 71.5 7 10 1.4e-10 2.3e-07 30.4 1.3 1 24 313 335 313 337 0.97 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 ZFP64-204 - 679 3.3e-39 132.3 71.5 8 10 1.3e-05 0.022 14.5 4.8 2 24 342 363 342 365 0.95 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 ZFP64-204 - 679 3.3e-39 132.3 71.5 9 10 1.1e-11 1.8e-08 34.0 2.7 1 24 369 392 369 393 0.95 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 ZFP64-204 - 679 3.3e-39 132.3 71.5 10 10 0.57 9.3e+02 -0.3 1.4 1 25 423 446 423 447 0.87 C2H2-type zinc-finger domain zf-C2H2 PF00096.26 23 ZFP64-204 - 679 7.1e-33 111.2 90.1 1 11 0.0012 2 9.0 0.1 1 21 29 49 29 50 0.91 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZFP64-204 - 679 7.1e-33 111.2 90.1 2 11 1.3 2e+03 -0.4 0.2 14 23 158 167 144 167 0.74 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZFP64-204 - 679 7.1e-33 111.2 90.1 3 11 1.8e-06 0.0029 18.0 8.5 1 21 173 193 173 195 0.95 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZFP64-204 - 679 7.1e-33 111.2 90.1 4 11 9.9e-07 0.0016 18.8 0.3 1 23 201 223 201 223 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZFP64-204 - 679 7.1e-33 111.2 90.1 5 11 3.3e-07 0.00054 20.3 0.7 1 23 229 251 229 251 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZFP64-204 - 679 7.1e-33 111.2 90.1 6 11 2.9e-07 0.00047 20.5 0.8 1 23 257 279 257 279 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZFP64-204 - 679 7.1e-33 111.2 90.1 7 11 1.7e-05 0.027 14.9 3.0 1 23 285 308 285 308 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZFP64-204 - 679 7.1e-33 111.2 90.1 8 11 0.00022 0.36 11.4 1.9 1 23 313 335 313 335 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZFP64-204 - 679 7.1e-33 111.2 90.1 9 11 4.3e-05 0.071 13.6 1.6 2 23 342 363 342 363 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZFP64-204 - 679 7.1e-33 111.2 90.1 10 11 2.1e-07 0.00035 20.9 3.6 1 23 369 392 369 392 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZFP64-204 - 679 7.1e-33 111.2 90.1 11 11 1.1e-05 0.018 15.5 2.1 1 23 423 445 423 445 0.97 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZFP64-204 - 679 1.3e-20 72.3 88.2 1 11 0.0012 2 9.5 0.1 1 21 29 49 29 50 0.91 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZFP64-204 - 679 1.3e-20 72.3 88.2 2 11 0.051 82 4.4 0.6 3 23 144 167 142 168 0.86 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZFP64-204 - 679 1.3e-20 72.3 88.2 3 11 7.6e-05 0.12 13.2 7.4 1 21 173 193 173 195 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZFP64-204 - 679 1.3e-20 72.3 88.2 4 11 0.0014 2.3 9.3 0.3 1 23 201 223 201 224 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZFP64-204 - 679 1.3e-20 72.3 88.2 5 11 0.00011 0.17 12.8 0.7 1 23 229 251 229 252 0.79 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZFP64-204 - 679 1.3e-20 72.3 88.2 6 11 0.00023 0.37 11.8 1.2 1 23 257 279 257 280 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZFP64-204 - 679 1.3e-20 72.3 88.2 7 11 0.00043 0.7 10.9 2.4 1 24 285 308 285 308 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZFP64-204 - 679 1.3e-20 72.3 88.2 8 11 0.00041 0.67 10.9 1.3 1 23 313 335 313 336 0.87 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZFP64-204 - 679 1.3e-20 72.3 88.2 9 11 0.0011 1.8 9.6 1.9 2 23 342 363 342 363 0.91 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZFP64-204 - 679 1.3e-20 72.3 88.2 10 11 1.3e-05 0.022 15.6 2.6 1 24 369 392 369 392 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZFP64-204 - 679 1.3e-20 72.3 88.2 11 11 5.7e-06 0.0093 16.7 1.5 1 23 423 445 423 446 0.95 C2H2-type zinc finger # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFP64-204.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFP64-204.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFP64-204.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFP64-204.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFP64-204.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:58:52 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZFP64-205 - 415 1.1e-40 136.3 68.0 1 10 6.7 1.3e+04 -3.1 0.0 17 26 33 42 30 42 0.84 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZFP64-205 - 415 1.1e-40 136.3 68.0 2 10 1.6e-10 3.1e-07 30.5 3.0 2 25 162 185 161 186 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZFP64-205 - 415 1.1e-40 136.3 68.0 3 10 5.4e-10 1.1e-06 28.8 3.1 2 24 190 212 189 213 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZFP64-205 - 415 1.1e-40 136.3 68.0 4 10 1.2e-08 2.4e-05 24.5 0.3 1 24 217 240 217 242 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZFP64-205 - 415 1.1e-40 136.3 68.0 5 10 0.16 3.2e+02 2.0 0.0 2 10 246 254 245 264 0.86 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZFP64-205 - 415 1.1e-40 136.3 68.0 6 10 5.7 1.1e+04 -2.9 1.4 12 26 296 312 293 312 0.56 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZFP64-205 - 415 1.1e-40 136.3 68.0 7 10 7.6e-12 1.5e-08 34.7 3.1 1 25 316 340 316 341 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZFP64-205 - 415 1.1e-40 136.3 68.0 8 10 3.3e-09 6.5e-06 26.3 4.0 1 24 344 367 344 368 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZFP64-205 - 415 1.1e-40 136.3 68.0 9 10 3.4e-09 6.7e-06 26.3 0.8 1 24 372 395 372 397 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZFP64-205 - 415 1.1e-40 136.3 68.0 10 10 0.057 1.1e+02 3.5 0.1 2 11 401 410 400 412 0.89 Zinc-finger double domain zf-H2C2_5 PF13909.6 26 ZFP64-205 - 415 2.2e-25 88.1 66.1 1 8 0.00011 0.21 11.4 0.1 6 26 151 171 151 171 0.77 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 ZFP64-205 - 415 2.2e-25 88.1 66.1 2 8 0.0027 5.4 6.9 0.8 12 26 186 199 185 199 0.92 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 ZFP64-205 - 415 2.2e-25 88.1 66.1 3 8 7.7e-10 1.5e-06 27.8 1.7 1 25 203 226 203 227 0.98 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 ZFP64-205 - 415 2.2e-25 88.1 66.1 4 8 9.4e-07 0.0019 17.9 0.4 1 25 231 254 231 255 0.97 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 ZFP64-205 - 415 2.2e-25 88.1 66.1 5 8 0.00036 0.73 9.7 1.6 14 26 315 326 306 326 0.79 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 ZFP64-205 - 415 2.2e-25 88.1 66.1 6 8 0.0094 19 5.1 9.9 1 25 330 353 330 354 0.95 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 ZFP64-205 - 415 2.2e-25 88.1 66.1 7 8 2.4e-08 4.7e-05 23.0 3.9 1 25 358 381 358 382 0.96 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 ZFP64-205 - 415 2.2e-25 88.1 66.1 8 8 8.7e-08 0.00017 21.2 0.8 1 26 386 410 386 410 0.99 C2H2-type zinc-finger domain zf-C2H2 PF00096.26 23 ZFP64-205 - 415 6.8e-24 82.9 79.3 1 9 0.00056 1.1 9.8 0.1 1 21 31 51 31 52 0.91 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZFP64-205 - 415 6.8e-24 82.9 79.3 2 9 0.58 1.2e+03 0.3 0.2 14 23 160 169 146 169 0.74 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZFP64-205 - 415 6.8e-24 82.9 79.3 3 9 8.2e-07 0.0016 18.8 8.5 1 21 175 195 175 197 0.95 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZFP64-205 - 415 6.8e-24 82.9 79.3 4 9 4.5e-07 0.0009 19.6 0.3 1 23 203 225 203 225 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZFP64-205 - 415 6.8e-24 82.9 79.3 5 9 1.5e-07 0.0003 21.1 0.7 1 23 231 253 231 253 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZFP64-205 - 415 6.8e-24 82.9 79.3 6 9 2.1 4.3e+03 -1.5 4.2 3 23 301 324 299 324 0.77 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZFP64-205 - 415 6.8e-24 82.9 79.3 7 9 2.6e-06 0.0051 17.2 9.2 1 21 330 350 330 352 0.95 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZFP64-205 - 415 6.8e-24 82.9 79.3 8 9 2.3e-06 0.0047 17.3 2.4 1 23 358 380 358 380 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZFP64-205 - 415 6.8e-24 82.9 79.3 9 9 3.1e-07 0.00062 20.1 0.9 1 23 386 408 386 408 0.99 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZFP64-205 - 415 6.9e-13 48.2 76.8 1 9 0.00056 1.1 10.3 0.1 1 21 31 51 31 52 0.91 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZFP64-205 - 415 6.9e-13 48.2 76.8 2 9 0.023 45 5.3 0.6 3 23 146 169 144 170 0.86 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZFP64-205 - 415 6.9e-13 48.2 76.8 3 9 3.5e-05 0.069 14.0 7.4 1 21 175 195 175 197 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZFP64-205 - 415 6.9e-13 48.2 76.8 4 9 0.00064 1.3 10.1 0.3 1 23 203 225 203 226 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZFP64-205 - 415 6.9e-13 48.2 76.8 5 9 4.8e-05 0.096 13.6 0.7 1 23 231 253 231 254 0.79 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZFP64-205 - 415 6.9e-13 48.2 76.8 6 9 0.032 64 4.8 3.4 1 23 299 324 299 325 0.79 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZFP64-205 - 415 6.9e-13 48.2 76.8 7 9 0.0014 2.7 9.1 7.5 1 21 330 350 330 352 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZFP64-205 - 415 6.9e-13 48.2 76.8 8 9 0.00084 1.7 9.7 2.4 1 23 358 380 358 381 0.91 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZFP64-205 - 415 6.9e-13 48.2 76.8 9 9 0.0001 0.2 12.6 0.8 1 23 386 408 386 409 0.79 C2H2-type zinc finger zf-C2H2_jaz PF12171.8 27 ZFP64-205 - 415 1.1e-09 38.3 41.1 1 9 0.0014 2.8 8.3 0.3 2 23 31 52 30 53 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZFP64-205 - 415 1.1e-09 38.3 41.1 2 9 1.2 2.5e+03 -1.1 0.1 7 22 151 167 151 167 0.69 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZFP64-205 - 415 1.1e-09 38.3 41.1 3 9 0.0029 5.9 7.3 0.9 2 22 175 195 174 195 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZFP64-205 - 415 1.1e-09 38.3 41.1 4 9 0.0016 3.2 8.2 0.1 2 22 203 223 202 223 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZFP64-205 - 415 1.1e-09 38.3 41.1 5 9 0.00014 0.28 11.5 0.1 2 24 231 253 230 253 0.96 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZFP64-205 - 415 1.1e-09 38.3 41.1 6 9 0.31 6.2e+02 0.9 0.1 7 22 306 322 306 322 0.85 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZFP64-205 - 415 1.1e-09 38.3 41.1 7 9 0.0028 5.5 7.4 2.1 2 22 330 350 329 350 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZFP64-205 - 415 1.1e-09 38.3 41.1 8 9 0.0019 3.8 7.9 0.3 2 22 358 378 357 378 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZFP64-205 - 415 1.1e-09 38.3 41.1 9 9 0.00019 0.38 11.1 0.1 2 24 386 408 385 408 0.95 Zinc-finger double-stranded RNA-binding # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFP64-205.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFP64-205.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFP64-205.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFP64-205.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFP64-205.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:58:52 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZFP64-206 - 426 7.6e-41 136.8 78.3 1 11 8.4 1.3e+04 -3.0 1.3 12 26 77 93 75 93 0.54 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZFP64-206 - 426 7.6e-41 136.8 78.3 2 11 1e-11 1.6e-08 34.6 3.1 1 25 97 121 97 122 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZFP64-206 - 426 7.6e-41 136.8 78.3 3 11 4.5e-09 6.7e-06 26.3 4.0 1 24 125 148 125 149 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZFP64-206 - 426 7.6e-41 136.8 78.3 4 11 4.7e-09 7e-06 26.2 0.8 1 24 153 176 153 178 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZFP64-206 - 426 7.6e-41 136.8 78.3 5 11 1.9e-10 2.8e-07 30.6 0.1 2 25 182 205 181 205 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZFP64-206 - 426 7.6e-41 136.8 78.3 6 11 1.5e-10 2.3e-07 30.9 1.3 1 22 209 230 209 233 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZFP64-206 - 426 7.6e-41 136.8 78.3 7 11 0.0069 10 6.7 1.4 1 21 237 254 237 257 0.85 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZFP64-206 - 426 7.6e-41 136.8 78.3 8 11 0.0026 3.8 8.1 1.5 2 25 263 286 262 287 0.84 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZFP64-206 - 426 7.6e-41 136.8 78.3 9 11 4.7e-06 0.007 16.8 2.6 1 25 290 314 290 315 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZFP64-206 - 426 7.6e-41 136.8 78.3 10 11 5.2 7.8e+03 -2.4 0.1 2 10 319 328 318 332 0.71 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZFP64-206 - 426 7.6e-41 136.8 78.3 11 11 0.023 35 5.1 0.0 12 25 358 371 348 372 0.73 Zinc-finger double domain zf-H2C2_5 PF13909.6 26 ZFP64-206 - 426 2.2e-30 104.0 76.4 1 9 0.0005 0.75 9.6 1.6 14 26 96 107 87 107 0.79 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 ZFP64-206 - 426 2.2e-30 104.0 76.4 2 9 0.01 15 5.4 9.6 1 25 111 134 111 135 0.95 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 ZFP64-206 - 426 2.2e-30 104.0 76.4 3 9 3.3e-08 4.9e-05 23.0 3.9 1 25 139 162 139 163 0.96 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 ZFP64-206 - 426 2.2e-30 104.0 76.4 4 9 1.2e-07 0.00018 21.2 0.8 1 26 167 191 167 191 0.99 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 ZFP64-206 - 426 2.2e-30 104.0 76.4 5 9 0.00046 0.69 9.7 0.0 13 26 207 219 195 219 0.87 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 ZFP64-206 - 426 2.2e-30 104.0 76.4 6 9 2e-07 0.00031 20.4 2.1 1 25 223 247 223 247 0.97 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 ZFP64-206 - 426 2.2e-30 104.0 76.4 7 9 0.00043 0.64 9.8 0.3 1 24 248 270 248 271 0.96 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 ZFP64-206 - 426 2.2e-30 104.0 76.4 8 9 6.2e-06 0.0093 15.7 3.8 2 24 277 298 277 300 0.97 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 ZFP64-206 - 426 2.2e-30 104.0 76.4 9 9 4.8e-10 7.2e-07 28.8 1.0 1 25 304 328 304 329 0.97 C2H2-type zinc-finger domain zf-C2H2 PF00096.26 23 ZFP64-206 - 426 4e-24 83.7 89.6 1 10 2.9 4.4e+03 -1.5 4.2 3 23 82 105 80 105 0.77 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZFP64-206 - 426 4e-24 83.7 89.6 2 10 3.5e-06 0.0053 17.2 9.2 1 21 111 131 111 133 0.95 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZFP64-206 - 426 4e-24 83.7 89.6 3 10 3.2e-06 0.0048 17.3 2.4 1 23 139 161 139 161 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZFP64-206 - 426 4e-24 83.7 89.6 4 10 4.3e-07 0.00064 20.0 0.9 1 23 167 189 167 189 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZFP64-206 - 426 4e-24 83.7 89.6 5 10 1.1e-06 0.0017 18.7 0.4 1 23 195 217 195 217 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZFP64-206 - 426 4e-24 83.7 89.6 6 10 8e-06 0.012 16.0 2.6 1 23 223 246 223 246 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZFP64-206 - 426 4e-24 83.7 89.6 7 10 0.014 21 5.8 0.9 1 23 248 270 248 270 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZFP64-206 - 426 4e-24 83.7 89.6 8 10 9.8e-06 0.015 15.8 0.9 2 23 277 298 277 298 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZFP64-206 - 426 4e-24 83.7 89.6 9 10 1.4e-05 0.02 15.3 0.9 1 23 304 327 304 327 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZFP64-206 - 426 4e-24 83.7 89.6 10 10 0.00077 1.2 9.8 2.6 1 23 361 383 361 383 0.95 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZFP64-206 - 426 1.3e-13 50.5 88.0 1 10 0.044 66 4.7 3.4 1 23 80 105 80 106 0.79 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZFP64-206 - 426 1.3e-13 50.5 88.0 2 10 0.0019 2.8 9.0 7.5 1 21 111 131 111 133 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZFP64-206 - 426 1.3e-13 50.5 88.0 3 10 0.0012 1.7 9.7 2.4 1 23 139 161 139 162 0.91 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZFP64-206 - 426 1.3e-13 50.5 88.0 4 10 0.00014 0.21 12.5 0.8 1 23 167 189 167 190 0.79 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZFP64-206 - 426 1.3e-13 50.5 88.0 5 10 0.0003 0.44 11.5 0.7 1 23 195 217 195 218 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZFP64-206 - 426 1.3e-13 50.5 88.0 6 10 0.00058 0.86 10.6 2.2 1 24 223 246 223 246 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZFP64-206 - 426 1.3e-13 50.5 88.0 7 10 0.027 40 5.4 0.7 1 23 248 270 248 271 0.90 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZFP64-206 - 426 1.3e-13 50.5 88.0 8 10 0.00033 0.5 11.3 1.6 2 23 277 298 277 298 0.83 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZFP64-206 - 426 1.3e-13 50.5 88.0 9 10 8.9e-05 0.13 13.1 1.0 1 24 304 327 304 327 0.91 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZFP64-206 - 426 1.3e-13 50.5 88.0 10 10 5.3e-05 0.079 13.8 2.4 1 23 361 383 361 384 0.95 C2H2-type zinc finger # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFP64-206.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFP64-206.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFP64-206.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFP64-206.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFP64-206.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:58:53 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFP64-207.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFP64-207.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFP64-207.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFP64-207.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFP64-207.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:58:53 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFP64-208.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFP64-208.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFP64-208.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFP64-208.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFP64-208.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:58:54 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZFP64-209 - 101 1.7e-26 91.4 26.1 1 4 1.2e-12 1.9e-09 37.5 3.1 1 25 3 27 3 28 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZFP64-209 - 101 1.7e-26 91.4 26.1 2 4 5.2e-10 8.4e-07 29.1 4.0 1 24 31 54 31 55 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZFP64-209 - 101 1.7e-26 91.4 26.1 3 4 5.3e-10 8.6e-07 29.1 0.8 1 24 59 82 59 84 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZFP64-209 - 101 1.7e-26 91.4 26.1 4 4 0.001 1.6 9.3 0.1 2 14 88 100 87 100 0.88 Zinc-finger double domain zf-H2C2_5 PF13909.6 26 ZFP64-209 - 101 6.9e-15 54.5 36.2 1 4 5.9e-05 0.097 12.5 0.3 15 26 3 13 2 13 0.92 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 ZFP64-209 - 101 6.9e-15 54.5 36.2 2 4 0.0037 6.1 6.7 11.2 1 25 17 40 17 41 0.95 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 ZFP64-209 - 101 6.9e-15 54.5 36.2 3 4 3.8e-09 6.2e-06 25.9 3.9 1 25 45 68 45 69 0.96 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 ZFP64-209 - 101 6.9e-15 54.5 36.2 4 4 1.4e-08 2.3e-05 24.1 0.8 1 26 73 97 73 97 0.99 C2H2-type zinc-finger domain zf-C2H2 PF00096.26 23 ZFP64-209 - 101 2.3e-13 49.8 33.1 1 4 0.16 2.6e+02 2.4 0.3 15 23 3 11 2 11 0.87 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZFP64-209 - 101 2.3e-13 49.8 33.1 2 4 4.3e-07 0.0007 19.9 9.2 1 21 17 37 17 39 0.95 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZFP64-209 - 101 2.3e-13 49.8 33.1 3 4 3.8e-07 0.00061 20.1 2.4 1 23 45 67 45 67 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZFP64-209 - 101 2.3e-13 49.8 33.1 4 4 5e-08 8.1e-05 22.9 0.9 1 23 73 95 73 95 0.99 Zinc finger, C2H2 type # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFP64-209.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFP64-209.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFP64-209.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFP64-209.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFP64-209.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:58:54 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFP64-210.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFP64-210.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFP64-210.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFP64-210.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFP64-210.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:58:54 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZFP64-211 - 136 1.6e-22 78.9 38.8 1 5 6.6 1.5e+04 -3.2 3.5 12 26 6 22 4 22 0.55 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZFP64-211 - 136 1.6e-22 78.9 38.8 2 5 1.4e-12 3.2e-09 36.8 3.1 1 25 26 50 26 51 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZFP64-211 - 136 1.6e-22 78.9 38.8 3 5 6.2e-10 1.4e-06 28.5 4.0 1 24 54 77 54 78 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZFP64-211 - 136 1.6e-22 78.9 38.8 4 5 6.4e-10 1.4e-06 28.4 0.8 1 24 82 105 82 107 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZFP64-211 - 136 1.6e-22 78.9 38.8 5 5 0.001 2.3 8.8 0.2 2 13 111 122 110 126 0.89 Zinc-finger double domain zf-H2C2_5 PF13909.6 26 ZFP64-211 - 136 1.1e-13 50.6 39.0 1 4 6.9e-05 0.15 11.8 1.4 14 26 25 36 16 36 0.79 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 ZFP64-211 - 136 1.1e-13 50.6 39.0 2 4 0.0035 7.9 6.3 10.8 1 25 40 63 40 64 0.95 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 ZFP64-211 - 136 1.1e-13 50.6 39.0 3 4 4.6e-09 1e-05 25.2 3.9 1 25 68 91 68 92 0.96 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 ZFP64-211 - 136 1.1e-13 50.6 39.0 4 4 1.7e-08 3.7e-05 23.4 0.8 1 26 96 120 96 120 0.99 C2H2-type zinc-finger domain zf-C2H2 PF00096.26 23 ZFP64-211 - 136 1.1e-10 41.4 41.9 1 4 2.8 6.3e+03 -2.0 6.8 3 23 11 34 9 34 0.79 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZFP64-211 - 136 1.1e-10 41.4 41.9 2 4 5e-07 0.0011 19.3 9.2 1 21 40 60 40 62 0.95 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZFP64-211 - 136 1.1e-10 41.4 41.9 3 4 4.5e-07 0.001 19.4 2.4 1 23 68 90 68 90 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZFP64-211 - 136 1.1e-10 41.4 41.9 4 4 6e-08 0.00013 22.2 0.9 1 23 96 118 96 118 0.99 Zinc finger, C2H2 type # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFP64-211.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFP64-211.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFP64-211.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFP64-211.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFP64-211.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:58:55 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZFP64-212 - 200 3e-23 81.1 33.2 1 6 6.6e-11 1.2e-07 31.8 3.0 2 25 4 27 3 28 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZFP64-212 - 200 3e-23 81.1 33.2 2 6 2.3e-10 4.1e-07 30.1 3.1 2 24 32 54 31 55 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZFP64-212 - 200 3e-23 81.1 33.2 3 6 5.1e-09 9.1e-06 25.9 0.3 1 24 59 82 59 84 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZFP64-212 - 200 3e-23 81.1 33.2 4 6 0.075 1.3e+02 3.2 0.0 2 10 88 96 87 106 0.85 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZFP64-212 - 200 3e-23 81.1 33.2 5 6 2.6 4.7e+03 -1.7 1.4 11 26 137 154 135 154 0.57 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZFP64-212 - 200 3e-23 81.1 33.2 6 6 0.0017 3 8.4 0.0 1 13 158 170 158 183 0.81 Zinc-finger double domain zf-H2C2_5 PF13909.6 26 ZFP64-212 - 200 1.7e-13 50.1 38.1 1 6 0.00019 0.34 10.7 0.5 15 26 3 13 2 13 0.92 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 ZFP64-212 - 200 1.7e-13 50.1 38.1 2 6 5.7 1e+04 -3.6 0.8 1 6 17 22 17 22 0.78 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 ZFP64-212 - 200 1.7e-13 50.1 38.1 3 6 0.0013 2.3 8.1 0.8 12 26 28 41 27 41 0.92 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 ZFP64-212 - 200 1.7e-13 50.1 38.1 4 6 3.3e-10 5.9e-07 29.1 1.7 1 25 45 68 45 69 0.98 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 ZFP64-212 - 200 1.7e-13 50.1 38.1 5 6 4e-07 0.00072 19.3 0.4 1 25 73 96 73 97 0.97 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 ZFP64-212 - 200 1.7e-13 50.1 38.1 6 6 0.00079 1.4 8.7 1.5 14 25 157 167 148 168 0.78 C2H2-type zinc-finger domain zf-C2H2 PF00096.26 23 ZFP64-212 - 200 1.4e-11 44.2 40.5 1 5 0.61 1.1e+03 0.4 0.4 15 23 3 11 2 11 0.84 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZFP64-212 - 200 1.4e-11 44.2 40.5 2 5 3.5e-07 0.00063 20.1 8.5 1 21 17 37 17 39 0.95 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZFP64-212 - 200 1.4e-11 44.2 40.5 3 5 1.9e-07 0.00034 20.9 0.3 1 23 45 67 45 67 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZFP64-212 - 200 1.4e-11 44.2 40.5 4 5 6.4e-08 0.00012 22.4 0.7 1 23 73 95 73 95 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZFP64-212 - 200 1.4e-11 44.2 40.5 5 5 0.95 1.7e+03 -0.2 4.2 3 23 143 166 141 166 0.78 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZFP64-212 - 200 6.3e-07 29.7 37.6 1 5 0.81 1.4e+03 0.6 0.3 14 23 2 11 1 12 0.83 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZFP64-212 - 200 6.3e-07 29.7 37.6 2 5 1.5e-05 0.027 15.3 7.4 1 21 17 37 17 39 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZFP64-212 - 200 6.3e-07 29.7 37.6 3 5 0.00027 0.48 11.4 0.3 1 23 45 67 45 68 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZFP64-212 - 200 6.3e-07 29.7 37.6 4 5 2e-05 0.036 14.9 0.7 1 23 73 95 73 96 0.79 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZFP64-212 - 200 6.3e-07 29.7 37.6 5 5 0.013 24 6.1 3.4 1 23 141 166 141 167 0.79 C2H2-type zinc finger # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFP64-212.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFP64-212.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFP64-212.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFP64-212.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFP64-212.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:58:55 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZFP69-201 - 526 3.4e-62 204.3 84.0 1 9 0.032 29 5.3 0.3 13 26 269 282 259 282 0.85 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZFP69-201 - 526 3.4e-62 204.3 84.0 2 9 1.9e-11 1.7e-08 34.5 1.2 1 25 285 309 285 310 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZFP69-201 - 526 3.4e-62 204.3 84.0 3 9 5.8e-12 5.2e-09 36.1 1.0 1 26 313 338 313 338 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZFP69-201 - 526 3.4e-62 204.3 84.0 4 9 9.2e-11 8.3e-08 32.3 1.5 1 25 341 365 341 366 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZFP69-201 - 526 3.4e-62 204.3 84.0 5 9 5.7e-11 5.1e-08 33.0 0.5 1 25 369 393 369 394 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZFP69-201 - 526 3.4e-62 204.3 84.0 6 9 8.1e-11 7.3e-08 32.5 4.3 1 26 397 422 397 422 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZFP69-201 - 526 3.4e-62 204.3 84.0 7 9 2.3e-10 2.1e-07 31.1 2.6 2 25 426 449 425 450 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZFP69-201 - 526 3.4e-62 204.3 84.0 8 9 1.5e-06 0.0013 19.0 3.1 1 26 453 478 453 478 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZFP69-201 - 526 3.4e-62 204.3 84.0 9 9 7.7e-11 6.9e-08 32.6 4.3 2 25 482 505 481 506 0.94 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZFP69-201 - 526 1.3e-42 141.9 82.4 1 9 1.2e-08 1.1e-05 25.6 0.6 1 23 271 293 271 293 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZFP69-201 - 526 1.3e-42 141.9 82.4 2 9 2.3e-08 2.1e-05 24.7 0.6 1 23 299 321 299 321 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZFP69-201 - 526 1.3e-42 141.9 82.4 3 9 5.8e-08 5.2e-05 23.5 4.2 1 23 327 349 327 349 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZFP69-201 - 526 1.3e-42 141.9 82.4 4 9 7.7e-08 6.9e-05 23.1 0.5 1 23 355 377 355 377 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZFP69-201 - 526 1.3e-42 141.9 82.4 5 9 5.1e-08 4.6e-05 23.6 1.6 1 23 383 405 383 405 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZFP69-201 - 526 1.3e-42 141.9 82.4 6 9 0.003 2.7 8.6 7.1 1 23 411 433 411 433 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZFP69-201 - 526 1.3e-42 141.9 82.4 7 9 1e-06 0.00092 19.5 2.6 1 23 439 461 439 461 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZFP69-201 - 526 1.3e-42 141.9 82.4 8 9 2.7e-05 0.025 15.0 6.5 1 23 467 489 467 489 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZFP69-201 - 526 1.3e-42 141.9 82.4 9 9 9.5e-08 8.5e-05 22.8 1.2 1 23 495 517 495 517 0.97 Zinc finger, C2H2 type KRAB PF01352.27 42 ZFP69-201 - 526 3e-23 81.2 0.1 1 2 9.8e-25 8.7e-22 76.5 0.0 2 42 76 116 75 116 0.98 KRAB box KRAB PF01352.27 42 ZFP69-201 - 526 3e-23 81.2 0.1 2 2 0.21 1.9e+02 1.8 0.0 22 35 165 178 162 180 0.90 KRAB box zf-C2H2_4 PF13894.6 24 ZFP69-201 - 526 2.7e-22 77.5 78.1 1 9 4.9e-05 0.044 14.6 0.5 1 23 271 293 271 294 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZFP69-201 - 526 2.7e-22 77.5 78.1 2 9 6.6e-06 0.0059 17.3 0.7 1 23 299 321 299 322 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZFP69-201 - 526 2.7e-22 77.5 78.1 3 9 0.0001 0.089 13.7 3.4 1 23 327 349 327 350 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZFP69-201 - 526 2.7e-22 77.5 78.1 4 9 2.8e-05 0.025 15.4 0.6 1 23 355 377 355 378 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZFP69-201 - 526 2.7e-22 77.5 78.1 5 9 1.7e-05 0.015 16.1 1.0 1 23 383 405 383 406 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZFP69-201 - 526 2.7e-22 77.5 78.1 6 9 0.0037 3.3 8.8 5.7 1 23 411 433 411 434 0.78 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZFP69-201 - 526 2.7e-22 77.5 78.1 7 9 0.00016 0.15 13.0 2.1 1 23 439 461 439 462 0.89 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZFP69-201 - 526 2.7e-22 77.5 78.1 8 9 0.011 9.9 7.3 4.9 1 23 467 489 467 490 0.88 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZFP69-201 - 526 2.7e-22 77.5 78.1 9 9 1.8e-05 0.016 16.0 1.2 1 23 495 517 495 518 0.92 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZFP69-201 - 526 5.8e-07 29.4 67.4 1 9 0.0035 3.1 7.9 0.2 2 24 271 293 270 296 0.81 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZFP69-201 - 526 5.8e-07 29.4 67.4 2 9 0.00094 0.84 9.7 0.6 2 22 299 319 299 323 0.85 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZFP69-201 - 526 5.8e-07 29.4 67.4 3 9 0.00083 0.74 9.9 3.9 2 24 327 349 327 352 0.95 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZFP69-201 - 526 5.8e-07 29.4 67.4 4 9 0.0012 1 9.4 0.4 2 25 355 378 355 380 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZFP69-201 - 526 5.8e-07 29.4 67.4 5 9 0.00065 0.58 10.2 0.4 2 16 383 397 383 405 0.79 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZFP69-201 - 526 5.8e-07 29.4 67.4 6 9 5.4 4.9e+03 -2.3 3.3 2 12 411 421 411 422 0.91 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZFP69-201 - 526 5.8e-07 29.4 67.4 7 9 0.0011 0.97 9.5 0.9 2 12 439 449 439 450 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZFP69-201 - 526 5.8e-07 29.4 67.4 8 9 0.089 79 3.4 1.7 1 12 466 477 466 491 0.83 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZFP69-201 - 526 5.8e-07 29.4 67.4 9 9 0.00029 0.26 11.3 1.3 2 18 495 511 495 519 0.80 C2H2-type zinc finger Zn-ribbon_8 PF09723.10 40 ZFP69-201 - 526 9.9e-07 28.8 48.2 1 8 0.0045 4.1 7.6 4.0 6 35 271 307 269 310 0.84 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZFP69-201 - 526 9.9e-07 28.8 48.2 2 8 0.00019 0.17 12.0 5.5 6 37 299 337 297 339 0.88 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZFP69-201 - 526 9.9e-07 28.8 48.2 3 8 0.0037 3.3 7.9 5.1 6 35 327 363 326 368 0.74 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZFP69-201 - 526 9.9e-07 28.8 48.2 4 8 0.00032 0.29 11.3 2.4 6 38 355 394 354 395 0.78 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZFP69-201 - 526 9.9e-07 28.8 48.2 5 8 0.0045 4 7.6 0.3 6 22 383 399 382 403 0.85 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZFP69-201 - 526 9.9e-07 28.8 48.2 6 8 9.9e-05 0.089 12.9 3.4 6 40 411 452 410 456 0.92 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZFP69-201 - 526 9.9e-07 28.8 48.2 7 8 0.011 9.5 6.4 7.5 6 34 467 502 465 505 0.84 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZFP69-201 - 526 9.9e-07 28.8 48.2 8 8 0.0061 5.5 7.2 0.6 6 17 495 506 494 517 0.78 Zinc ribbon domain # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFP69-201.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFP69-201.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFP69-201.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFP69-201.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFP69-201.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:58:55 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZFP69-202 - 526 3.4e-62 204.3 84.0 1 9 0.032 29 5.3 0.3 13 26 269 282 259 282 0.85 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZFP69-202 - 526 3.4e-62 204.3 84.0 2 9 1.9e-11 1.7e-08 34.5 1.2 1 25 285 309 285 310 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZFP69-202 - 526 3.4e-62 204.3 84.0 3 9 5.8e-12 5.2e-09 36.1 1.0 1 26 313 338 313 338 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZFP69-202 - 526 3.4e-62 204.3 84.0 4 9 9.2e-11 8.3e-08 32.3 1.5 1 25 341 365 341 366 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZFP69-202 - 526 3.4e-62 204.3 84.0 5 9 5.7e-11 5.1e-08 33.0 0.5 1 25 369 393 369 394 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZFP69-202 - 526 3.4e-62 204.3 84.0 6 9 8.1e-11 7.3e-08 32.5 4.3 1 26 397 422 397 422 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZFP69-202 - 526 3.4e-62 204.3 84.0 7 9 2.3e-10 2.1e-07 31.1 2.6 2 25 426 449 425 450 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZFP69-202 - 526 3.4e-62 204.3 84.0 8 9 1.5e-06 0.0013 19.0 3.1 1 26 453 478 453 478 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZFP69-202 - 526 3.4e-62 204.3 84.0 9 9 7.7e-11 6.9e-08 32.6 4.3 2 25 482 505 481 506 0.94 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZFP69-202 - 526 1.3e-42 141.9 82.4 1 9 1.2e-08 1.1e-05 25.6 0.6 1 23 271 293 271 293 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZFP69-202 - 526 1.3e-42 141.9 82.4 2 9 2.3e-08 2.1e-05 24.7 0.6 1 23 299 321 299 321 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZFP69-202 - 526 1.3e-42 141.9 82.4 3 9 5.8e-08 5.2e-05 23.5 4.2 1 23 327 349 327 349 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZFP69-202 - 526 1.3e-42 141.9 82.4 4 9 7.7e-08 6.9e-05 23.1 0.5 1 23 355 377 355 377 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZFP69-202 - 526 1.3e-42 141.9 82.4 5 9 5.1e-08 4.6e-05 23.6 1.6 1 23 383 405 383 405 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZFP69-202 - 526 1.3e-42 141.9 82.4 6 9 0.003 2.7 8.6 7.1 1 23 411 433 411 433 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZFP69-202 - 526 1.3e-42 141.9 82.4 7 9 1e-06 0.00092 19.5 2.6 1 23 439 461 439 461 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZFP69-202 - 526 1.3e-42 141.9 82.4 8 9 2.7e-05 0.025 15.0 6.5 1 23 467 489 467 489 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZFP69-202 - 526 1.3e-42 141.9 82.4 9 9 9.5e-08 8.5e-05 22.8 1.2 1 23 495 517 495 517 0.97 Zinc finger, C2H2 type KRAB PF01352.27 42 ZFP69-202 - 526 3e-23 81.2 0.1 1 2 9.8e-25 8.7e-22 76.5 0.0 2 42 76 116 75 116 0.98 KRAB box KRAB PF01352.27 42 ZFP69-202 - 526 3e-23 81.2 0.1 2 2 0.21 1.9e+02 1.8 0.0 22 35 165 178 162 180 0.90 KRAB box zf-C2H2_4 PF13894.6 24 ZFP69-202 - 526 2.7e-22 77.5 78.1 1 9 4.9e-05 0.044 14.6 0.5 1 23 271 293 271 294 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZFP69-202 - 526 2.7e-22 77.5 78.1 2 9 6.6e-06 0.0059 17.3 0.7 1 23 299 321 299 322 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZFP69-202 - 526 2.7e-22 77.5 78.1 3 9 0.0001 0.089 13.7 3.4 1 23 327 349 327 350 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZFP69-202 - 526 2.7e-22 77.5 78.1 4 9 2.8e-05 0.025 15.4 0.6 1 23 355 377 355 378 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZFP69-202 - 526 2.7e-22 77.5 78.1 5 9 1.7e-05 0.015 16.1 1.0 1 23 383 405 383 406 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZFP69-202 - 526 2.7e-22 77.5 78.1 6 9 0.0037 3.3 8.8 5.7 1 23 411 433 411 434 0.78 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZFP69-202 - 526 2.7e-22 77.5 78.1 7 9 0.00016 0.15 13.0 2.1 1 23 439 461 439 462 0.89 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZFP69-202 - 526 2.7e-22 77.5 78.1 8 9 0.011 9.9 7.3 4.9 1 23 467 489 467 490 0.88 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZFP69-202 - 526 2.7e-22 77.5 78.1 9 9 1.8e-05 0.016 16.0 1.2 1 23 495 517 495 518 0.92 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZFP69-202 - 526 5.8e-07 29.4 67.4 1 9 0.0035 3.1 7.9 0.2 2 24 271 293 270 296 0.81 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZFP69-202 - 526 5.8e-07 29.4 67.4 2 9 0.00094 0.84 9.7 0.6 2 22 299 319 299 323 0.85 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZFP69-202 - 526 5.8e-07 29.4 67.4 3 9 0.00083 0.74 9.9 3.9 2 24 327 349 327 352 0.95 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZFP69-202 - 526 5.8e-07 29.4 67.4 4 9 0.0012 1 9.4 0.4 2 25 355 378 355 380 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZFP69-202 - 526 5.8e-07 29.4 67.4 5 9 0.00065 0.58 10.2 0.4 2 16 383 397 383 405 0.79 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZFP69-202 - 526 5.8e-07 29.4 67.4 6 9 5.4 4.9e+03 -2.3 3.3 2 12 411 421 411 422 0.91 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZFP69-202 - 526 5.8e-07 29.4 67.4 7 9 0.0011 0.97 9.5 0.9 2 12 439 449 439 450 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZFP69-202 - 526 5.8e-07 29.4 67.4 8 9 0.089 79 3.4 1.7 1 12 466 477 466 491 0.83 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZFP69-202 - 526 5.8e-07 29.4 67.4 9 9 0.00029 0.26 11.3 1.3 2 18 495 511 495 519 0.80 C2H2-type zinc finger Zn-ribbon_8 PF09723.10 40 ZFP69-202 - 526 9.9e-07 28.8 48.2 1 8 0.0045 4.1 7.6 4.0 6 35 271 307 269 310 0.84 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZFP69-202 - 526 9.9e-07 28.8 48.2 2 8 0.00019 0.17 12.0 5.5 6 37 299 337 297 339 0.88 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZFP69-202 - 526 9.9e-07 28.8 48.2 3 8 0.0037 3.3 7.9 5.1 6 35 327 363 326 368 0.74 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZFP69-202 - 526 9.9e-07 28.8 48.2 4 8 0.00032 0.29 11.3 2.4 6 38 355 394 354 395 0.78 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZFP69-202 - 526 9.9e-07 28.8 48.2 5 8 0.0045 4 7.6 0.3 6 22 383 399 382 403 0.85 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZFP69-202 - 526 9.9e-07 28.8 48.2 6 8 9.9e-05 0.089 12.9 3.4 6 40 411 452 410 456 0.92 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZFP69-202 - 526 9.9e-07 28.8 48.2 7 8 0.011 9.5 6.4 7.5 6 34 467 502 465 505 0.84 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZFP69-202 - 526 9.9e-07 28.8 48.2 8 8 0.0061 5.5 7.2 0.6 6 17 495 506 494 517 0.78 Zinc ribbon domain # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFP69-202.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFP69-202.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFP69-202.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFP69-202.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFP69-202.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:58:56 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFP69-203.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFP69-203.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFP69-203.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFP69-203.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFP69-203.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:58:56 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZFP69B-201 - 534 6.4e-66 216.1 73.5 1 11 3.2 3.1e+03 -1.1 0.0 20 25 213 218 210 219 0.84 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZFP69B-201 - 534 6.4e-66 216.1 73.5 2 11 0.00079 0.75 10.3 0.3 1 26 265 290 265 290 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZFP69B-201 - 534 6.4e-66 216.1 73.5 3 11 3.1e-12 2.9e-09 36.9 1.5 1 25 293 317 293 318 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZFP69B-201 - 534 6.4e-66 216.1 73.5 4 11 1.3e-10 1.2e-07 31.8 2.3 5 26 325 346 322 346 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZFP69B-201 - 534 6.4e-66 216.1 73.5 5 11 8.1e-12 7.6e-09 35.6 0.2 1 25 349 373 349 374 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZFP69B-201 - 534 6.4e-66 216.1 73.5 6 11 2.4e-08 2.2e-05 24.6 0.4 2 24 378 400 377 402 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZFP69B-201 - 534 6.4e-66 216.1 73.5 7 11 1.9e-08 1.8e-05 25.0 1.2 1 26 405 430 405 430 0.97 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZFP69B-201 - 534 6.4e-66 216.1 73.5 8 11 9.4e-12 8.8e-09 35.4 1.3 2 25 434 457 433 458 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZFP69B-201 - 534 6.4e-66 216.1 73.5 9 11 1.9e-10 1.8e-07 31.3 3.5 1 26 461 486 461 486 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZFP69B-201 - 534 6.4e-66 216.1 73.5 10 11 5.3e-10 5e-07 29.9 1.7 2 25 490 513 489 514 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZFP69B-201 - 534 6.4e-66 216.1 73.5 11 11 0.74 7e+02 1.0 0.2 2 10 518 526 517 530 0.83 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZFP69B-201 - 534 6.2e-44 146.1 79.5 1 10 1.1 1e+03 0.5 0.0 5 12 212 219 210 222 0.85 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZFP69B-201 - 534 6.2e-44 146.1 79.5 2 10 7.8e-08 7.3e-05 23.0 0.8 1 23 279 301 279 301 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZFP69B-201 - 534 6.2e-44 146.1 79.5 3 10 8.7e-08 8.2e-05 22.9 0.4 1 23 307 329 307 329 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZFP69B-201 - 534 6.2e-44 146.1 79.5 4 10 2.8e-09 2.7e-06 27.5 1.8 1 23 335 357 335 357 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZFP69B-201 - 534 6.2e-44 146.1 79.5 5 10 5.7e-07 0.00054 20.3 0.2 1 23 363 385 363 385 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZFP69B-201 - 534 6.2e-44 146.1 79.5 6 10 2.5e-06 0.0024 18.2 1.2 1 23 391 413 391 413 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZFP69B-201 - 534 6.2e-44 146.1 79.5 7 10 1.9e-07 0.00018 21.8 4.3 1 23 419 441 419 441 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZFP69B-201 - 534 6.2e-44 146.1 79.5 8 10 2.3e-08 2.2e-05 24.6 1.6 1 23 447 469 447 469 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZFP69B-201 - 534 6.2e-44 146.1 79.5 9 10 4.3e-07 0.00041 20.7 4.0 1 23 475 497 475 497 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZFP69B-201 - 534 6.2e-44 146.1 79.5 10 10 0.00021 0.2 12.2 4.6 1 23 503 525 503 525 0.96 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZFP69B-201 - 534 5.5e-26 89.0 72.4 1 10 8.5 8e+03 -1.7 0.0 5 12 212 219 211 222 0.77 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZFP69B-201 - 534 5.5e-26 89.0 72.4 2 10 0.0001 0.095 13.6 0.7 1 23 279 301 279 302 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZFP69B-201 - 534 5.5e-26 89.0 72.4 3 10 5.1e-05 0.048 14.5 0.5 1 23 307 329 307 330 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZFP69B-201 - 534 5.5e-26 89.0 72.4 4 10 6.7e-06 0.0063 17.3 1.5 1 23 335 357 335 358 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZFP69B-201 - 534 5.5e-26 89.0 72.4 5 10 1.2e-05 0.012 16.4 0.2 1 23 363 385 363 386 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZFP69B-201 - 534 5.5e-26 89.0 72.4 6 10 9.4e-05 0.089 13.7 0.9 1 23 391 413 391 414 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZFP69B-201 - 534 5.5e-26 89.0 72.4 7 10 3.5e-05 0.033 15.0 2.9 1 23 419 441 419 442 0.89 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZFP69B-201 - 534 5.5e-26 89.0 72.4 8 10 0.00011 0.1 13.5 1.4 1 23 447 469 447 470 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZFP69B-201 - 534 5.5e-26 89.0 72.4 9 10 0.00035 0.33 11.9 3.1 1 23 475 497 475 498 0.91 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZFP69B-201 - 534 5.5e-26 89.0 72.4 10 10 8.8e-06 0.0083 16.9 4.0 3 23 505 525 503 526 0.94 C2H2-type zinc finger KRAB PF01352.27 42 ZFP69B-201 - 534 2.2e-24 84.8 0.1 1 1 7.2e-27 6.8e-24 83.2 0.1 2 42 74 114 73 114 0.98 KRAB box zf-C2H2_jaz PF12171.8 27 ZFP69B-201 - 534 2.3e-11 43.7 47.9 1 10 5 4.7e+03 -1.9 0.1 6 11 212 217 211 220 0.85 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZFP69B-201 - 534 2.3e-11 43.7 47.9 2 10 0.0058 5.5 7.4 0.7 2 21 279 298 278 299 0.82 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZFP69B-201 - 534 2.3e-11 43.7 47.9 3 10 0.021 20 5.6 0.0 2 17 307 322 306 327 0.80 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZFP69B-201 - 534 2.3e-11 43.7 47.9 4 10 2.5e-05 0.023 15.0 0.0 2 22 335 355 334 355 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZFP69B-201 - 534 2.3e-11 43.7 47.9 5 10 0.0032 3 8.2 0.0 2 24 363 385 362 386 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZFP69B-201 - 534 2.3e-11 43.7 47.9 6 10 0.11 1e+02 3.4 0.3 2 21 391 410 390 411 0.89 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZFP69B-201 - 534 2.3e-11 43.7 47.9 7 10 7.4e-05 0.07 13.4 1.3 2 24 419 441 418 441 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZFP69B-201 - 534 2.3e-11 43.7 47.9 8 10 0.077 73 3.8 0.2 2 12 447 457 446 467 0.84 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZFP69B-201 - 534 2.3e-11 43.7 47.9 9 10 0.00034 0.32 11.3 0.7 2 22 475 495 474 495 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZFP69B-201 - 534 2.3e-11 43.7 47.9 10 10 0.066 63 4.0 2.5 2 24 503 525 502 526 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_6 PF13912.6 27 ZFP69B-201 - 534 8.9e-11 41.5 68.7 1 10 3.2 3e+03 -1.6 0.1 7 11 213 217 212 218 0.89 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZFP69B-201 - 534 8.9e-11 41.5 68.7 2 10 0.00012 0.12 12.5 0.2 2 24 279 301 278 304 0.92 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZFP69B-201 - 534 8.9e-11 41.5 68.7 3 10 0.00034 0.32 11.0 0.3 2 20 307 325 307 331 0.80 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZFP69B-201 - 534 8.9e-11 41.5 68.7 4 10 8.1e-05 0.077 13.0 0.7 2 13 335 346 335 357 0.80 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZFP69B-201 - 534 8.9e-11 41.5 68.7 5 10 0.00028 0.26 11.3 0.1 2 24 363 385 363 388 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZFP69B-201 - 534 8.9e-11 41.5 68.7 6 10 0.97 9.1e+02 0.0 2.5 2 11 391 400 391 412 0.82 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZFP69B-201 - 534 8.9e-11 41.5 68.7 7 10 0.00016 0.15 12.1 2.5 2 24 419 441 419 444 0.92 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZFP69B-201 - 534 8.9e-11 41.5 68.7 8 10 0.0012 1.1 9.3 1.1 2 12 447 457 447 458 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZFP69B-201 - 534 8.9e-11 41.5 68.7 9 10 0.019 17 5.5 1.3 2 12 475 485 475 486 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZFP69B-201 - 534 8.9e-11 41.5 68.7 10 10 0.01 9.5 6.4 4.7 2 25 503 526 503 527 0.92 C2H2-type zinc finger Zn-ribbon_8 PF09723.10 40 ZFP69B-201 - 534 3.4e-08 33.5 40.5 1 8 0.14 1.3e+02 2.7 0.1 6 19 279 292 278 302 0.83 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZFP69B-201 - 534 3.4e-08 33.5 40.5 2 8 4e-06 0.0038 17.3 3.7 6 36 307 344 306 347 0.92 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZFP69B-201 - 534 3.4e-08 33.5 40.5 3 8 0.0015 1.4 9.1 5.4 6 35 335 371 334 376 0.85 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZFP69B-201 - 534 3.4e-08 33.5 40.5 4 8 0.015 14 5.9 3.4 6 34 363 398 362 403 0.75 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZFP69B-201 - 534 3.4e-08 33.5 40.5 5 8 0.015 14 5.9 1.8 6 33 391 425 390 429 0.72 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZFP69B-201 - 534 3.4e-08 33.5 40.5 6 8 0.00077 0.73 10.0 2.4 6 38 419 458 416 460 0.83 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZFP69B-201 - 534 3.4e-08 33.5 40.5 7 8 3.6e-05 0.034 14.3 3.5 6 35 447 483 446 485 0.87 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZFP69B-201 - 534 3.4e-08 33.5 40.5 8 8 9.2e-05 0.087 13.0 4.4 6 34 475 510 474 515 0.92 Zinc ribbon domain # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFP69B-201.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFP69B-201.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFP69B-201.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFP69B-201.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFP69B-201.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:58:57 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZFP69B-202 - 534 6.4e-66 216.1 73.5 1 11 3.2 3.1e+03 -1.1 0.0 20 25 213 218 210 219 0.84 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZFP69B-202 - 534 6.4e-66 216.1 73.5 2 11 0.00079 0.75 10.3 0.3 1 26 265 290 265 290 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZFP69B-202 - 534 6.4e-66 216.1 73.5 3 11 3.1e-12 2.9e-09 36.9 1.5 1 25 293 317 293 318 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZFP69B-202 - 534 6.4e-66 216.1 73.5 4 11 1.3e-10 1.2e-07 31.8 2.3 5 26 325 346 322 346 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZFP69B-202 - 534 6.4e-66 216.1 73.5 5 11 8.1e-12 7.6e-09 35.6 0.2 1 25 349 373 349 374 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZFP69B-202 - 534 6.4e-66 216.1 73.5 6 11 2.4e-08 2.2e-05 24.6 0.4 2 24 378 400 377 402 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZFP69B-202 - 534 6.4e-66 216.1 73.5 7 11 1.9e-08 1.8e-05 25.0 1.2 1 26 405 430 405 430 0.97 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZFP69B-202 - 534 6.4e-66 216.1 73.5 8 11 9.4e-12 8.8e-09 35.4 1.3 2 25 434 457 433 458 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZFP69B-202 - 534 6.4e-66 216.1 73.5 9 11 1.9e-10 1.8e-07 31.3 3.5 1 26 461 486 461 486 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZFP69B-202 - 534 6.4e-66 216.1 73.5 10 11 5.3e-10 5e-07 29.9 1.7 2 25 490 513 489 514 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZFP69B-202 - 534 6.4e-66 216.1 73.5 11 11 0.74 7e+02 1.0 0.2 2 10 518 526 517 530 0.83 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZFP69B-202 - 534 6.2e-44 146.1 79.5 1 10 1.1 1e+03 0.5 0.0 5 12 212 219 210 222 0.85 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZFP69B-202 - 534 6.2e-44 146.1 79.5 2 10 7.8e-08 7.3e-05 23.0 0.8 1 23 279 301 279 301 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZFP69B-202 - 534 6.2e-44 146.1 79.5 3 10 8.7e-08 8.2e-05 22.9 0.4 1 23 307 329 307 329 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZFP69B-202 - 534 6.2e-44 146.1 79.5 4 10 2.8e-09 2.7e-06 27.5 1.8 1 23 335 357 335 357 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZFP69B-202 - 534 6.2e-44 146.1 79.5 5 10 5.7e-07 0.00054 20.3 0.2 1 23 363 385 363 385 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZFP69B-202 - 534 6.2e-44 146.1 79.5 6 10 2.5e-06 0.0024 18.2 1.2 1 23 391 413 391 413 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZFP69B-202 - 534 6.2e-44 146.1 79.5 7 10 1.9e-07 0.00018 21.8 4.3 1 23 419 441 419 441 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZFP69B-202 - 534 6.2e-44 146.1 79.5 8 10 2.3e-08 2.2e-05 24.6 1.6 1 23 447 469 447 469 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZFP69B-202 - 534 6.2e-44 146.1 79.5 9 10 4.3e-07 0.00041 20.7 4.0 1 23 475 497 475 497 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZFP69B-202 - 534 6.2e-44 146.1 79.5 10 10 0.00021 0.2 12.2 4.6 1 23 503 525 503 525 0.96 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZFP69B-202 - 534 5.5e-26 89.0 72.4 1 10 8.5 8e+03 -1.7 0.0 5 12 212 219 211 222 0.77 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZFP69B-202 - 534 5.5e-26 89.0 72.4 2 10 0.0001 0.095 13.6 0.7 1 23 279 301 279 302 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZFP69B-202 - 534 5.5e-26 89.0 72.4 3 10 5.1e-05 0.048 14.5 0.5 1 23 307 329 307 330 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZFP69B-202 - 534 5.5e-26 89.0 72.4 4 10 6.7e-06 0.0063 17.3 1.5 1 23 335 357 335 358 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZFP69B-202 - 534 5.5e-26 89.0 72.4 5 10 1.2e-05 0.012 16.4 0.2 1 23 363 385 363 386 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZFP69B-202 - 534 5.5e-26 89.0 72.4 6 10 9.4e-05 0.089 13.7 0.9 1 23 391 413 391 414 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZFP69B-202 - 534 5.5e-26 89.0 72.4 7 10 3.5e-05 0.033 15.0 2.9 1 23 419 441 419 442 0.89 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZFP69B-202 - 534 5.5e-26 89.0 72.4 8 10 0.00011 0.1 13.5 1.4 1 23 447 469 447 470 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZFP69B-202 - 534 5.5e-26 89.0 72.4 9 10 0.00035 0.33 11.9 3.1 1 23 475 497 475 498 0.91 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZFP69B-202 - 534 5.5e-26 89.0 72.4 10 10 8.8e-06 0.0083 16.9 4.0 3 23 505 525 503 526 0.94 C2H2-type zinc finger KRAB PF01352.27 42 ZFP69B-202 - 534 2.2e-24 84.8 0.1 1 1 7.2e-27 6.8e-24 83.2 0.1 2 42 74 114 73 114 0.98 KRAB box zf-C2H2_jaz PF12171.8 27 ZFP69B-202 - 534 2.3e-11 43.7 47.9 1 10 5 4.7e+03 -1.9 0.1 6 11 212 217 211 220 0.85 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZFP69B-202 - 534 2.3e-11 43.7 47.9 2 10 0.0058 5.5 7.4 0.7 2 21 279 298 278 299 0.82 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZFP69B-202 - 534 2.3e-11 43.7 47.9 3 10 0.021 20 5.6 0.0 2 17 307 322 306 327 0.80 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZFP69B-202 - 534 2.3e-11 43.7 47.9 4 10 2.5e-05 0.023 15.0 0.0 2 22 335 355 334 355 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZFP69B-202 - 534 2.3e-11 43.7 47.9 5 10 0.0032 3 8.2 0.0 2 24 363 385 362 386 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZFP69B-202 - 534 2.3e-11 43.7 47.9 6 10 0.11 1e+02 3.4 0.3 2 21 391 410 390 411 0.89 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZFP69B-202 - 534 2.3e-11 43.7 47.9 7 10 7.4e-05 0.07 13.4 1.3 2 24 419 441 418 441 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZFP69B-202 - 534 2.3e-11 43.7 47.9 8 10 0.077 73 3.8 0.2 2 12 447 457 446 467 0.84 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZFP69B-202 - 534 2.3e-11 43.7 47.9 9 10 0.00034 0.32 11.3 0.7 2 22 475 495 474 495 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZFP69B-202 - 534 2.3e-11 43.7 47.9 10 10 0.066 63 4.0 2.5 2 24 503 525 502 526 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_6 PF13912.6 27 ZFP69B-202 - 534 8.9e-11 41.5 68.7 1 10 3.2 3e+03 -1.6 0.1 7 11 213 217 212 218 0.89 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZFP69B-202 - 534 8.9e-11 41.5 68.7 2 10 0.00012 0.12 12.5 0.2 2 24 279 301 278 304 0.92 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZFP69B-202 - 534 8.9e-11 41.5 68.7 3 10 0.00034 0.32 11.0 0.3 2 20 307 325 307 331 0.80 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZFP69B-202 - 534 8.9e-11 41.5 68.7 4 10 8.1e-05 0.077 13.0 0.7 2 13 335 346 335 357 0.80 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZFP69B-202 - 534 8.9e-11 41.5 68.7 5 10 0.00028 0.26 11.3 0.1 2 24 363 385 363 388 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZFP69B-202 - 534 8.9e-11 41.5 68.7 6 10 0.97 9.1e+02 0.0 2.5 2 11 391 400 391 412 0.82 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZFP69B-202 - 534 8.9e-11 41.5 68.7 7 10 0.00016 0.15 12.1 2.5 2 24 419 441 419 444 0.92 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZFP69B-202 - 534 8.9e-11 41.5 68.7 8 10 0.0012 1.1 9.3 1.1 2 12 447 457 447 458 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZFP69B-202 - 534 8.9e-11 41.5 68.7 9 10 0.019 17 5.5 1.3 2 12 475 485 475 486 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZFP69B-202 - 534 8.9e-11 41.5 68.7 10 10 0.01 9.5 6.4 4.7 2 25 503 526 503 527 0.92 C2H2-type zinc finger Zn-ribbon_8 PF09723.10 40 ZFP69B-202 - 534 3.4e-08 33.5 40.5 1 8 0.14 1.3e+02 2.7 0.1 6 19 279 292 278 302 0.83 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZFP69B-202 - 534 3.4e-08 33.5 40.5 2 8 4e-06 0.0038 17.3 3.7 6 36 307 344 306 347 0.92 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZFP69B-202 - 534 3.4e-08 33.5 40.5 3 8 0.0015 1.4 9.1 5.4 6 35 335 371 334 376 0.85 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZFP69B-202 - 534 3.4e-08 33.5 40.5 4 8 0.015 14 5.9 3.4 6 34 363 398 362 403 0.75 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZFP69B-202 - 534 3.4e-08 33.5 40.5 5 8 0.015 14 5.9 1.8 6 33 391 425 390 429 0.72 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZFP69B-202 - 534 3.4e-08 33.5 40.5 6 8 0.00077 0.73 10.0 2.4 6 38 419 458 416 460 0.83 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZFP69B-202 - 534 3.4e-08 33.5 40.5 7 8 3.6e-05 0.034 14.3 3.5 6 35 447 483 446 485 0.87 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZFP69B-202 - 534 3.4e-08 33.5 40.5 8 8 9.2e-05 0.087 13.0 4.4 6 34 475 510 474 515 0.92 Zinc ribbon domain # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFP69B-202.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFP69B-202.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFP69B-202.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFP69B-202.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFP69B-202.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:58:57 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZFP69B-203 - 400 1.8e-67 221.0 73.5 1 11 2.6 2.2e+03 -0.6 0.0 20 25 79 84 76 85 0.84 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZFP69B-203 - 400 1.8e-67 221.0 73.5 2 11 0.00061 0.52 10.8 0.3 1 26 131 156 131 156 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZFP69B-203 - 400 1.8e-67 221.0 73.5 3 11 2.4e-12 2.1e-09 37.4 1.5 1 25 159 183 159 184 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZFP69B-203 - 400 1.8e-67 221.0 73.5 4 11 1e-10 8.8e-08 32.3 2.3 5 26 191 212 188 212 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZFP69B-203 - 400 1.8e-67 221.0 73.5 5 11 6.3e-12 5.4e-09 36.1 0.2 1 25 215 239 215 240 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZFP69B-203 - 400 1.8e-67 221.0 73.5 6 11 1.8e-08 1.6e-05 25.1 0.4 2 24 244 266 243 268 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZFP69B-203 - 400 1.8e-67 221.0 73.5 7 11 1.4e-08 1.2e-05 25.5 1.2 1 26 271 296 271 296 0.97 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZFP69B-203 - 400 1.8e-67 221.0 73.5 8 11 7.3e-12 6.2e-09 35.9 1.3 2 25 300 323 299 324 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZFP69B-203 - 400 1.8e-67 221.0 73.5 9 11 1.5e-10 1.3e-07 31.7 3.5 1 26 327 352 327 352 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZFP69B-203 - 400 1.8e-67 221.0 73.5 10 11 4.1e-10 3.5e-07 30.3 1.7 2 25 356 379 355 380 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZFP69B-203 - 400 1.8e-67 221.0 73.5 11 11 0.59 5e+02 1.4 0.2 2 10 384 392 383 396 0.83 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZFP69B-203 - 400 2.1e-45 150.7 79.5 1 11 0.86 7.3e+02 1.0 0.0 5 12 78 85 76 88 0.85 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZFP69B-203 - 400 2.1e-45 150.7 79.5 2 11 9.5 8.1e+03 -2.3 0.0 8 21 124 137 123 138 0.77 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZFP69B-203 - 400 2.1e-45 150.7 79.5 3 11 6.1e-08 5.2e-05 23.5 0.8 1 23 145 167 145 167 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZFP69B-203 - 400 2.1e-45 150.7 79.5 4 11 6.7e-08 5.8e-05 23.3 0.4 1 23 173 195 173 195 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZFP69B-203 - 400 2.1e-45 150.7 79.5 5 11 2.2e-09 1.9e-06 28.0 1.8 1 23 201 223 201 223 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZFP69B-203 - 400 2.1e-45 150.7 79.5 6 11 4.5e-07 0.00038 20.7 0.2 1 23 229 251 229 251 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZFP69B-203 - 400 2.1e-45 150.7 79.5 7 11 2e-06 0.0017 18.7 1.2 1 23 257 279 257 279 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZFP69B-203 - 400 2.1e-45 150.7 79.5 8 11 1.4e-07 0.00012 22.3 4.3 1 23 285 307 285 307 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZFP69B-203 - 400 2.1e-45 150.7 79.5 9 11 1.8e-08 1.6e-05 25.1 1.6 1 23 313 335 313 335 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZFP69B-203 - 400 2.1e-45 150.7 79.5 10 11 3.4e-07 0.00029 21.1 4.0 1 23 341 363 341 363 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZFP69B-203 - 400 2.1e-45 150.7 79.5 11 11 0.00016 0.14 12.7 4.6 1 23 369 391 369 391 0.96 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZFP69B-203 - 400 2e-27 93.5 72.5 1 10 6.7 5.8e+03 -1.3 0.0 5 12 78 85 77 88 0.77 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZFP69B-203 - 400 2e-27 93.5 72.5 2 10 7.8e-05 0.066 14.1 0.7 1 23 145 167 145 168 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZFP69B-203 - 400 2e-27 93.5 72.5 3 10 3.9e-05 0.033 15.0 0.5 1 23 173 195 173 196 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZFP69B-203 - 400 2e-27 93.5 72.5 4 10 5.2e-06 0.0044 17.7 1.5 1 23 201 223 201 224 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZFP69B-203 - 400 2e-27 93.5 72.5 5 10 9.6e-06 0.0082 16.9 0.2 1 23 229 251 229 252 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZFP69B-203 - 400 2e-27 93.5 72.5 6 10 7.3e-05 0.062 14.2 0.9 1 23 257 279 257 280 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZFP69B-203 - 400 2e-27 93.5 72.5 7 10 2.7e-05 0.023 15.5 2.9 1 23 285 307 285 308 0.89 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZFP69B-203 - 400 2e-27 93.5 72.5 8 10 8.6e-05 0.073 13.9 1.4 1 23 313 335 313 336 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZFP69B-203 - 400 2e-27 93.5 72.5 9 10 0.00027 0.23 12.4 3.1 1 23 341 363 341 364 0.91 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZFP69B-203 - 400 2e-27 93.5 72.5 10 10 6.8e-06 0.0058 17.4 4.0 3 23 371 391 369 392 0.94 C2H2-type zinc finger zf-C2H2_jaz PF12171.8 27 ZFP69B-203 - 400 8.6e-13 48.2 47.7 1 10 3.4 2.9e+03 -1.3 0.1 6 11 78 83 77 87 0.82 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZFP69B-203 - 400 8.6e-13 48.2 47.7 2 10 0.0046 3.9 7.9 0.7 2 21 145 164 144 165 0.83 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZFP69B-203 - 400 8.6e-13 48.2 47.7 3 10 0.017 14 6.1 0.0 2 17 173 188 172 193 0.80 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZFP69B-203 - 400 8.6e-13 48.2 47.7 4 10 1.9e-05 0.016 15.4 0.0 2 22 201 221 200 221 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZFP69B-203 - 400 8.6e-13 48.2 47.7 5 10 0.0025 2.2 8.7 0.0 2 24 229 251 228 252 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZFP69B-203 - 400 8.6e-13 48.2 47.7 6 10 0.084 71 3.9 0.3 2 21 257 276 256 277 0.89 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZFP69B-203 - 400 8.6e-13 48.2 47.7 7 10 5.8e-05 0.049 13.9 1.3 2 24 285 307 284 307 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZFP69B-203 - 400 8.6e-13 48.2 47.7 8 10 0.061 52 4.3 0.2 2 12 313 323 312 333 0.84 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZFP69B-203 - 400 8.6e-13 48.2 47.7 9 10 0.00026 0.23 11.8 0.7 2 22 341 361 340 361 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZFP69B-203 - 400 8.6e-13 48.2 47.7 10 10 0.052 44 4.5 2.5 2 24 369 391 368 392 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_6 PF13912.6 27 ZFP69B-203 - 400 4.1e-12 45.8 69.0 1 10 2.3 2e+03 -1.0 0.1 7 11 79 83 78 85 0.88 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZFP69B-203 - 400 4.1e-12 45.8 69.0 2 10 9.6e-05 0.082 12.9 0.2 2 24 145 167 144 170 0.92 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZFP69B-203 - 400 4.1e-12 45.8 69.0 3 10 0.00027 0.23 11.5 0.3 2 20 173 191 173 197 0.80 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZFP69B-203 - 400 4.1e-12 45.8 69.0 4 10 6.4e-05 0.055 13.5 0.8 2 13 201 212 201 223 0.80 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZFP69B-203 - 400 4.1e-12 45.8 69.0 5 10 0.00021 0.18 11.8 0.1 2 24 229 251 229 254 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZFP69B-203 - 400 4.1e-12 45.8 69.0 6 10 1 8.6e+02 0.1 2.9 2 11 257 266 257 278 0.82 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZFP69B-203 - 400 4.1e-12 45.8 69.0 7 10 0.00013 0.11 12.5 2.5 2 24 285 307 285 310 0.92 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZFP69B-203 - 400 4.1e-12 45.8 69.0 8 10 0.00097 0.83 9.7 1.1 2 12 313 323 313 324 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZFP69B-203 - 400 4.1e-12 45.8 69.0 9 10 0.015 13 6.0 1.3 2 12 341 351 341 352 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZFP69B-203 - 400 4.1e-12 45.8 69.0 10 10 0.0078 6.7 6.8 4.7 2 25 369 392 369 393 0.92 C2H2-type zinc finger Zn-ribbon_8 PF09723.10 40 ZFP69B-203 - 400 4.2e-09 36.4 40.8 1 8 0.11 96 3.2 0.1 6 20 145 159 144 168 0.83 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZFP69B-203 - 400 4.2e-09 36.4 40.8 2 8 3.7e-06 0.0031 17.6 3.9 6 36 173 210 172 212 0.92 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZFP69B-203 - 400 4.2e-09 36.4 40.8 3 8 0.0013 1.1 9.4 5.5 6 35 201 237 200 242 0.85 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZFP69B-203 - 400 4.2e-09 36.4 40.8 4 8 0.013 11 6.2 3.3 6 34 229 264 228 266 0.75 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZFP69B-203 - 400 4.2e-09 36.4 40.8 5 8 0.016 13 6.0 2.1 6 32 257 290 256 294 0.71 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZFP69B-203 - 400 4.2e-09 36.4 40.8 6 8 0.00064 0.55 10.4 2.5 6 38 285 324 282 326 0.83 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZFP69B-203 - 400 4.2e-09 36.4 40.8 7 8 2.4e-05 0.02 15.0 3.3 6 35 313 349 312 351 0.87 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZFP69B-203 - 400 4.2e-09 36.4 40.8 8 8 6.7e-05 0.057 13.5 4.4 6 34 341 376 339 381 0.93 Zinc ribbon domain # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFP69B-203.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFP69B-203.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFP69B-203.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFP69B-203.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFP69B-203.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:58:58 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZFP69B-204 - 432 4.6e-67 219.6 73.5 1 11 2.7 2.4e+03 -0.8 0.0 20 25 111 116 108 117 0.84 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZFP69B-204 - 432 4.6e-67 219.6 73.5 2 11 0.00064 0.58 10.7 0.3 1 26 163 188 163 188 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZFP69B-204 - 432 4.6e-67 219.6 73.5 3 11 2.5e-12 2.3e-09 37.3 1.5 1 25 191 215 191 216 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZFP69B-204 - 432 4.6e-67 219.6 73.5 4 11 1.1e-10 9.6e-08 32.1 2.3 5 26 223 244 220 244 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZFP69B-204 - 432 4.6e-67 219.6 73.5 5 11 6.6e-12 5.9e-09 36.0 0.2 1 25 247 271 247 272 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZFP69B-204 - 432 4.6e-67 219.6 73.5 6 11 1.9e-08 1.7e-05 25.0 0.4 2 24 276 298 275 300 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZFP69B-204 - 432 4.6e-67 219.6 73.5 7 11 1.5e-08 1.4e-05 25.3 1.2 1 26 303 328 303 328 0.97 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZFP69B-204 - 432 4.6e-67 219.6 73.5 8 11 7.6e-12 6.8e-09 35.8 1.3 2 25 332 355 331 356 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZFP69B-204 - 432 4.6e-67 219.6 73.5 9 11 1.6e-10 1.4e-07 31.6 3.5 1 26 359 384 359 384 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZFP69B-204 - 432 4.6e-67 219.6 73.5 10 11 4.3e-10 3.9e-07 30.2 1.7 2 25 388 411 387 412 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZFP69B-204 - 432 4.6e-67 219.6 73.5 11 11 0.61 5.5e+02 1.3 0.2 2 10 416 424 415 428 0.83 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZFP69B-204 - 432 5.4e-45 149.4 79.5 1 11 0.89 8e+02 0.8 0.0 5 12 110 117 108 120 0.85 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZFP69B-204 - 432 5.4e-45 149.4 79.5 2 11 9.8 8.8e+03 -2.4 0.0 8 21 156 169 155 170 0.77 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZFP69B-204 - 432 5.4e-45 149.4 79.5 3 11 6.3e-08 5.7e-05 23.4 0.8 1 23 177 199 177 199 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZFP69B-204 - 432 5.4e-45 149.4 79.5 4 11 7.1e-08 6.3e-05 23.2 0.4 1 23 205 227 205 227 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZFP69B-204 - 432 5.4e-45 149.4 79.5 5 11 2.3e-09 2.1e-06 27.9 1.8 1 23 233 255 233 255 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZFP69B-204 - 432 5.4e-45 149.4 79.5 6 11 4.7e-07 0.00042 20.6 0.2 1 23 261 283 261 283 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZFP69B-204 - 432 5.4e-45 149.4 79.5 7 11 2.1e-06 0.0018 18.6 1.2 1 23 289 311 289 311 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZFP69B-204 - 432 5.4e-45 149.4 79.5 8 11 1.5e-07 0.00014 22.2 4.3 1 23 317 339 317 339 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZFP69B-204 - 432 5.4e-45 149.4 79.5 9 11 1.9e-08 1.7e-05 25.0 1.6 1 23 345 367 345 367 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZFP69B-204 - 432 5.4e-45 149.4 79.5 10 11 3.5e-07 0.00032 21.0 4.0 1 23 373 395 373 395 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZFP69B-204 - 432 5.4e-45 149.4 79.5 11 11 0.00017 0.15 12.5 4.6 1 23 401 423 401 423 0.96 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZFP69B-204 - 432 5e-27 92.3 72.5 1 10 7 6.3e+03 -1.4 0.0 5 12 110 117 109 120 0.77 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZFP69B-204 - 432 5e-27 92.3 72.5 2 10 8.2e-05 0.073 13.9 0.7 1 23 177 199 177 200 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZFP69B-204 - 432 5e-27 92.3 72.5 3 10 4.1e-05 0.037 14.9 0.5 1 23 205 227 205 228 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZFP69B-204 - 432 5e-27 92.3 72.5 4 10 5.4e-06 0.0049 17.6 1.5 1 23 233 255 233 256 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZFP69B-204 - 432 5e-27 92.3 72.5 5 10 1e-05 0.009 16.8 0.2 1 23 261 283 261 284 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZFP69B-204 - 432 5e-27 92.3 72.5 6 10 7.6e-05 0.068 14.0 0.9 1 23 289 311 289 312 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZFP69B-204 - 432 5e-27 92.3 72.5 7 10 2.9e-05 0.026 15.4 2.9 1 23 317 339 317 340 0.89 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZFP69B-204 - 432 5e-27 92.3 72.5 8 10 9e-05 0.081 13.8 1.4 1 23 345 367 345 368 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZFP69B-204 - 432 5e-27 92.3 72.5 9 10 0.00029 0.26 12.2 3.1 1 23 373 395 373 396 0.91 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZFP69B-204 - 432 5e-27 92.3 72.5 10 10 7.2e-06 0.0064 17.2 4.0 3 23 403 423 401 424 0.94 C2H2-type zinc finger zf-C2H2_jaz PF12171.8 27 ZFP69B-204 - 432 2e-12 47.0 47.7 1 10 3.6 3.2e+03 -1.4 0.1 6 11 110 115 109 119 0.82 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZFP69B-204 - 432 2e-12 47.0 47.7 2 10 0.0048 4.3 7.7 0.7 2 21 177 196 176 197 0.83 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZFP69B-204 - 432 2e-12 47.0 47.7 3 10 0.017 16 6.0 0.0 2 17 205 220 204 225 0.80 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZFP69B-204 - 432 2e-12 47.0 47.7 4 10 2e-05 0.018 15.3 0.0 2 22 233 253 232 253 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZFP69B-204 - 432 2e-12 47.0 47.7 5 10 0.0026 2.4 8.6 0.0 2 24 261 283 260 284 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZFP69B-204 - 432 2e-12 47.0 47.7 6 10 0.087 78 3.7 0.3 2 21 289 308 288 309 0.89 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZFP69B-204 - 432 2e-12 47.0 47.7 7 10 6e-05 0.054 13.8 1.3 2 24 317 339 316 339 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZFP69B-204 - 432 2e-12 47.0 47.7 8 10 0.064 57 4.2 0.2 2 12 345 355 344 365 0.84 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZFP69B-204 - 432 2e-12 47.0 47.7 9 10 0.00028 0.25 11.7 0.7 2 22 373 393 372 393 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZFP69B-204 - 432 2e-12 47.0 47.7 10 10 0.054 49 4.4 2.5 2 24 401 423 400 424 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_6 PF13912.6 27 ZFP69B-204 - 432 9e-12 44.7 68.8 1 10 2.4 2.1e+03 -1.2 0.1 7 11 111 115 110 117 0.88 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZFP69B-204 - 432 9e-12 44.7 68.8 2 10 0.0001 0.09 12.8 0.2 2 24 177 199 176 202 0.92 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZFP69B-204 - 432 9e-12 44.7 68.8 3 10 0.00028 0.25 11.4 0.3 2 20 205 223 205 229 0.80 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZFP69B-204 - 432 9e-12 44.7 68.8 4 10 6.7e-05 0.06 13.4 0.8 2 13 233 244 233 255 0.80 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZFP69B-204 - 432 9e-12 44.7 68.8 5 10 0.00022 0.2 11.7 0.1 2 24 261 283 261 286 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZFP69B-204 - 432 9e-12 44.7 68.8 6 10 0.95 8.5e+02 0.1 2.8 2 11 289 298 289 310 0.82 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZFP69B-204 - 432 9e-12 44.7 68.8 7 10 0.00013 0.12 12.4 2.5 2 24 317 339 317 342 0.92 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZFP69B-204 - 432 9e-12 44.7 68.8 8 10 0.001 0.9 9.6 1.1 2 12 345 355 345 356 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZFP69B-204 - 432 9e-12 44.7 68.8 9 10 0.015 14 5.8 1.3 2 12 373 383 373 384 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZFP69B-204 - 432 9e-12 44.7 68.8 10 10 0.0082 7.4 6.7 4.7 2 25 401 424 401 425 0.92 C2H2-type zinc finger Zn-ribbon_8 PF09723.10 40 ZFP69B-204 - 432 5.8e-09 35.9 40.3 1 8 0.12 1.1e+02 3.1 0.1 6 20 177 191 176 200 0.83 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZFP69B-204 - 432 5.8e-09 35.9 40.3 2 8 3.4e-06 0.0031 17.6 3.7 6 36 205 242 204 244 0.92 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZFP69B-204 - 432 5.8e-09 35.9 40.3 3 8 0.0011 0.96 9.6 5.2 6 35 233 269 232 274 0.85 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZFP69B-204 - 432 5.8e-09 35.9 40.3 4 8 0.011 9.9 6.4 3.2 6 34 261 296 260 301 0.75 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZFP69B-204 - 432 5.8e-09 35.9 40.3 5 8 0.016 15 5.8 1.9 6 32 289 322 288 325 0.70 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZFP69B-204 - 432 5.8e-09 35.9 40.3 6 8 0.0007 0.63 10.2 2.6 6 38 317 356 314 358 0.83 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZFP69B-204 - 432 5.8e-09 35.9 40.3 7 8 2.4e-05 0.022 14.9 3.4 6 36 345 382 344 384 0.87 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZFP69B-204 - 432 5.8e-09 35.9 40.3 8 8 5.6e-05 0.05 13.7 4.0 6 34 373 408 372 411 0.92 Zinc ribbon domain # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFP69B-204.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFP69B-204.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFP69B-204.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFP69B-204.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFP69B-204.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:58:58 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZFP82-201 - 532 9.6e-90 291.4 104.9 1 13 2.2e-07 0.00016 21.9 1.7 5 24 160 179 159 180 0.97 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZFP82-201 - 532 9.6e-90 291.4 104.9 2 13 2.5e-09 1.9e-06 28.0 1.4 2 25 185 208 184 209 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZFP82-201 - 532 9.6e-90 291.4 104.9 3 13 3.4e-09 2.6e-06 27.6 2.1 1 24 212 235 212 237 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZFP82-201 - 532 9.6e-90 291.4 104.9 4 13 1.8e-10 1.3e-07 31.7 0.5 1 24 240 263 240 264 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZFP82-201 - 532 9.6e-90 291.4 104.9 5 13 8.9e-11 6.6e-08 32.6 0.3 2 25 269 292 268 293 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZFP82-201 - 532 9.6e-90 291.4 104.9 6 13 8.7e-05 0.065 13.7 1.3 1 25 296 320 296 321 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZFP82-201 - 532 9.6e-90 291.4 104.9 7 13 3.5e-10 2.6e-07 30.8 2.2 1 24 324 347 324 348 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZFP82-201 - 532 9.6e-90 291.4 104.9 8 13 8.3e-12 6.2e-09 35.9 0.7 2 25 353 376 352 377 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZFP82-201 - 532 9.6e-90 291.4 104.9 9 13 2.1e-08 1.5e-05 25.2 2.2 2 25 381 404 380 405 0.89 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZFP82-201 - 532 9.6e-90 291.4 104.9 10 13 3.3e-07 0.00024 21.4 0.1 2 24 409 431 408 432 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZFP82-201 - 532 9.6e-90 291.4 104.9 11 13 1.5e-09 1.1e-06 28.8 0.4 2 24 437 459 436 460 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZFP82-201 - 532 9.6e-90 291.4 104.9 12 13 5.1e-10 3.8e-07 30.2 1.3 2 24 465 487 464 488 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZFP82-201 - 532 9.6e-90 291.4 104.9 13 13 8.4e-11 6.2e-08 32.7 0.5 2 25 493 516 492 517 0.92 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZFP82-201 - 532 3e-57 188.0 103.6 1 13 5.1e-05 0.038 14.4 2.1 1 23 170 192 170 192 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZFP82-201 - 532 3e-57 188.0 103.6 2 13 1.7e-08 1.3e-05 25.4 1.6 1 23 198 220 198 220 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZFP82-201 - 532 3e-57 188.0 103.6 3 13 0.00025 0.19 12.2 0.2 1 23 226 248 226 248 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZFP82-201 - 532 3e-57 188.0 103.6 4 13 7.1e-08 5.3e-05 23.4 0.2 1 23 254 276 254 276 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZFP82-201 - 532 3e-57 188.0 103.6 5 13 7.2e-08 5.4e-05 23.4 0.8 1 21 282 302 282 303 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZFP82-201 - 532 3e-57 188.0 103.6 6 13 0.2 1.5e+02 3.1 5.7 1 23 310 332 310 332 0.79 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZFP82-201 - 532 3e-57 188.0 103.6 7 13 1.4e-07 0.0001 22.5 0.4 1 23 338 360 338 360 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZFP82-201 - 532 3e-57 188.0 103.6 8 13 2.3e-07 0.00017 21.9 3.4 1 23 366 388 366 388 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZFP82-201 - 532 3e-57 188.0 103.6 9 13 8.3e-08 6.2e-05 23.2 0.5 1 23 394 416 394 416 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZFP82-201 - 532 3e-57 188.0 103.6 10 13 4.8e-07 0.00036 20.8 0.4 1 23 422 444 422 444 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZFP82-201 - 532 3e-57 188.0 103.6 11 13 2.5e-06 0.0019 18.6 1.0 1 23 450 472 450 472 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZFP82-201 - 532 3e-57 188.0 103.6 12 13 9.6e-07 0.00072 19.9 0.6 1 23 478 500 478 500 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZFP82-201 - 532 3e-57 188.0 103.6 13 13 1.3e-06 0.00097 19.5 7.3 1 23 506 528 506 528 0.98 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZFP82-201 - 532 6.8e-30 101.2 95.6 1 13 0.00058 0.44 11.5 1.7 1 23 170 192 170 193 0.91 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZFP82-201 - 532 6.8e-30 101.2 95.6 2 13 0.00017 0.12 13.2 1.3 1 23 198 220 198 221 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZFP82-201 - 532 6.8e-30 101.2 95.6 3 13 4.7e-05 0.035 14.9 0.2 1 23 226 248 226 249 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZFP82-201 - 532 6.8e-30 101.2 95.6 4 13 0.00045 0.34 11.9 0.3 1 23 254 276 254 277 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZFP82-201 - 532 6.8e-30 101.2 95.6 5 13 0.00011 0.079 13.8 0.7 1 21 282 302 282 303 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZFP82-201 - 532 6.8e-30 101.2 95.6 6 13 0.0001 0.075 13.9 2.3 1 23 310 332 310 333 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZFP82-201 - 532 6.8e-30 101.2 95.6 7 13 0.00031 0.23 12.4 0.5 1 23 338 360 338 361 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZFP82-201 - 532 6.8e-30 101.2 95.6 8 13 0.00012 0.086 13.7 2.2 1 23 366 388 366 389 0.83 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZFP82-201 - 532 6.8e-30 101.2 95.6 9 13 0.006 4.5 8.4 0.5 1 23 394 416 394 417 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZFP82-201 - 532 6.8e-30 101.2 95.6 10 13 0.0015 1.1 10.3 0.2 3 23 424 444 422 445 0.91 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZFP82-201 - 532 6.8e-30 101.2 95.6 11 13 0.0012 0.87 10.6 0.8 1 23 450 472 450 473 0.89 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZFP82-201 - 532 6.8e-30 101.2 95.6 12 13 5.6e-05 0.042 14.7 0.7 1 23 478 500 478 501 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZFP82-201 - 532 6.8e-30 101.2 95.6 13 13 0.00043 0.32 11.9 5.8 1 23 506 528 506 529 0.96 C2H2-type zinc finger KRAB PF01352.27 42 ZFP82-201 - 532 2.3e-23 81.6 0.7 1 1 5.5e-26 4.1e-23 80.7 0.7 1 42 5 46 5 46 0.99 KRAB box zf-C2H2_6 PF13912.6 27 ZFP82-201 - 532 3.4e-21 74.7 96.2 1 13 0.00048 0.36 10.9 1.0 2 13 170 181 170 193 0.79 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZFP82-201 - 532 3.4e-21 74.7 96.2 2 13 0.02 15 5.7 0.3 2 12 198 208 198 221 0.86 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZFP82-201 - 532 3.4e-21 74.7 96.2 3 13 0.002 1.5 8.9 0.7 2 22 226 246 225 248 0.76 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZFP82-201 - 532 3.4e-21 74.7 96.2 4 13 0.00095 0.71 9.9 0.8 2 12 254 264 254 264 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZFP82-201 - 532 3.4e-21 74.7 96.2 5 13 0.00037 0.28 11.2 1.3 2 20 282 300 282 302 0.86 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZFP82-201 - 532 3.4e-21 74.7 96.2 6 13 0.0022 1.6 8.8 2.4 2 12 310 320 309 333 0.76 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZFP82-201 - 532 3.4e-21 74.7 96.2 7 13 0.00027 0.2 11.7 0.4 2 18 338 354 338 361 0.78 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZFP82-201 - 532 3.4e-21 74.7 96.2 8 13 4.8e-06 0.0036 17.3 2.3 2 22 366 386 366 390 0.89 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZFP82-201 - 532 3.4e-21 74.7 96.2 9 13 0.00013 0.095 12.7 0.9 2 21 394 413 394 416 0.92 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZFP82-201 - 532 3.4e-21 74.7 96.2 10 13 0.0028 2.1 8.4 0.5 2 20 422 440 422 444 0.78 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZFP82-201 - 532 3.4e-21 74.7 96.2 11 13 0.00066 0.49 10.4 0.5 2 12 450 460 450 472 0.84 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZFP82-201 - 532 3.4e-21 74.7 96.2 12 13 0.00069 0.51 10.4 0.4 2 24 478 500 478 503 0.89 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZFP82-201 - 532 3.4e-21 74.7 96.2 13 13 0.0074 5.5 7.1 5.4 2 22 506 526 506 529 0.80 C2H2-type zinc finger Zn-ribbon_8 PF09723.10 40 ZFP82-201 - 532 1.8e-15 56.7 72.8 1 13 0.00019 0.14 12.3 5.7 6 37 170 208 169 211 0.72 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZFP82-201 - 532 1.8e-15 56.7 72.8 2 13 0.0072 5.4 7.2 6.6 6 34 198 233 196 235 0.84 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZFP82-201 - 532 1.8e-15 56.7 72.8 3 13 3.2e-05 0.024 14.8 6.0 6 36 226 263 224 269 0.90 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZFP82-201 - 532 1.8e-15 56.7 72.8 4 13 7.3e-06 0.0055 16.8 3.7 6 37 254 292 253 294 0.90 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZFP82-201 - 532 1.8e-15 56.7 72.8 5 13 0.00025 0.19 11.9 4.0 6 34 282 317 281 320 0.84 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZFP82-201 - 532 1.8e-15 56.7 72.8 6 13 0.00041 0.31 11.2 6.8 6 36 310 349 309 353 0.86 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZFP82-201 - 532 1.8e-15 56.7 72.8 7 13 2.6e-05 0.019 15.1 5.8 6 38 338 377 337 377 0.85 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZFP82-201 - 532 1.8e-15 56.7 72.8 8 13 8.6e-05 0.064 13.4 3.0 6 35 366 402 365 406 0.85 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZFP82-201 - 532 1.8e-15 56.7 72.8 9 13 0.0011 0.83 9.8 3.0 6 36 394 431 393 434 0.88 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZFP82-201 - 532 1.8e-15 56.7 72.8 10 13 1.7e-05 0.013 15.6 2.9 6 36 422 459 421 463 0.87 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZFP82-201 - 532 1.8e-15 56.7 72.8 11 13 0.00012 0.092 12.9 3.8 6 35 450 486 449 490 0.82 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZFP82-201 - 532 1.8e-15 56.7 72.8 12 13 0.021 16 5.7 5.5 6 37 478 516 477 518 0.79 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZFP82-201 - 532 1.8e-15 56.7 72.8 13 13 0.07 52 4.1 1.2 6 16 506 516 504 523 0.85 Zinc ribbon domain C1_4 PF07975.12 55 ZFP82-201 - 532 5.9e-09 36.0 58.9 1 10 0.037 27 5.1 0.5 21 49 165 193 147 195 0.77 TFIIH C1-like domain C1_4 PF07975.12 55 ZFP82-201 - 532 5.9e-09 36.0 58.9 2 10 1.8e-05 0.013 15.7 3.0 1 48 199 248 199 251 0.89 TFIIH C1-like domain C1_4 PF07975.12 55 ZFP82-201 - 532 5.9e-09 36.0 58.9 3 10 0.024 18 5.7 0.0 25 49 253 277 249 279 0.90 TFIIH C1-like domain C1_4 PF07975.12 55 ZFP82-201 - 532 5.9e-09 36.0 58.9 4 10 5.1e-05 0.038 14.2 1.9 2 49 284 333 283 336 0.88 TFIIH C1-like domain C1_4 PF07975.12 55 ZFP82-201 - 532 5.9e-09 36.0 58.9 5 10 0.016 12 6.2 2.7 1 48 339 388 339 392 0.80 TFIIH C1-like domain C1_4 PF07975.12 55 ZFP82-201 - 532 5.9e-09 36.0 58.9 6 10 0.18 1.4e+02 2.8 4.0 2 48 368 416 367 420 0.78 TFIIH C1-like domain C1_4 PF07975.12 55 ZFP82-201 - 532 5.9e-09 36.0 58.9 7 10 0.027 20 5.5 2.2 2 48 396 444 395 447 0.79 TFIIH C1-like domain C1_4 PF07975.12 55 ZFP82-201 - 532 5.9e-09 36.0 58.9 8 10 0.0014 1.1 9.6 1.2 2 49 424 473 423 476 0.84 TFIIH C1-like domain C1_4 PF07975.12 55 ZFP82-201 - 532 5.9e-09 36.0 58.9 9 10 0.0061 4.5 7.6 1.6 2 48 452 500 451 503 0.79 TFIIH C1-like domain C1_4 PF07975.12 55 ZFP82-201 - 532 5.9e-09 36.0 58.9 10 10 0.2 1.5e+02 2.7 6.3 2 36 480 516 479 530 0.67 TFIIH C1-like domain XPA_N PF01286.18 32 ZFP82-201 - 532 1.7e-08 34.3 58.9 1 13 0.014 11 6.2 0.1 3 11 171 179 169 182 0.89 XPA protein N-terminal XPA_N PF01286.18 32 ZFP82-201 - 532 1.7e-08 34.3 58.9 2 13 0.091 68 3.6 0.1 3 13 199 209 197 214 0.86 XPA protein N-terminal XPA_N PF01286.18 32 ZFP82-201 - 532 1.7e-08 34.3 58.9 3 13 0.093 70 3.6 0.5 3 11 227 235 226 236 0.90 XPA protein N-terminal XPA_N PF01286.18 32 ZFP82-201 - 532 1.7e-08 34.3 58.9 4 13 0.015 11 6.1 0.2 3 11 255 263 253 265 0.89 XPA protein N-terminal XPA_N PF01286.18 32 ZFP82-201 - 532 1.7e-08 34.3 58.9 5 13 0.017 12 6.0 0.1 3 12 283 292 281 293 0.87 XPA protein N-terminal XPA_N PF01286.18 32 ZFP82-201 - 532 1.7e-08 34.3 58.9 6 13 0.033 24 5.1 1.7 3 12 311 320 310 322 0.92 XPA protein N-terminal XPA_N PF01286.18 32 ZFP82-201 - 532 1.7e-08 34.3 58.9 7 13 0.015 11 6.1 0.2 3 11 339 347 337 349 0.89 XPA protein N-terminal XPA_N PF01286.18 32 ZFP82-201 - 532 1.7e-08 34.3 58.9 8 13 0.0054 4 7.6 0.1 3 13 367 377 365 381 0.85 XPA protein N-terminal XPA_N PF01286.18 32 ZFP82-201 - 532 1.7e-08 34.3 58.9 9 13 0.14 1.1e+02 3.0 0.1 3 12 395 404 393 412 0.84 XPA protein N-terminal XPA_N PF01286.18 32 ZFP82-201 - 532 1.7e-08 34.3 58.9 10 13 0.012 9.3 6.4 0.1 3 11 423 431 421 440 0.81 XPA protein N-terminal XPA_N PF01286.18 32 ZFP82-201 - 532 1.7e-08 34.3 58.9 11 13 0.013 9.8 6.3 0.2 3 11 451 459 449 461 0.90 XPA protein N-terminal XPA_N PF01286.18 32 ZFP82-201 - 532 1.7e-08 34.3 58.9 12 13 0.057 43 4.3 0.2 3 11 479 487 477 496 0.81 XPA protein N-terminal XPA_N PF01286.18 32 ZFP82-201 - 532 1.7e-08 34.3 58.9 13 13 0.025 19 5.4 0.2 3 12 507 516 505 523 0.87 XPA protein N-terminal zf-C2H2_8 PF15909.5 98 ZFP82-201 - 532 6.8e-07 29.5 53.6 1 7 0.00013 0.097 13.0 4.2 9 88 141 219 133 223 0.76 C2H2-type zinc ribbon zf-C2H2_8 PF15909.5 98 ZFP82-201 - 532 6.8e-07 29.5 53.6 2 7 0.00027 0.2 12.0 1.2 31 87 221 274 209 281 0.71 C2H2-type zinc ribbon zf-C2H2_8 PF15909.5 98 ZFP82-201 - 532 6.8e-07 29.5 53.6 3 7 0.012 9.3 6.6 4.7 24 87 296 358 283 364 0.72 C2H2-type zinc ribbon zf-C2H2_8 PF15909.5 98 ZFP82-201 - 532 6.8e-07 29.5 53.6 4 7 0.019 14 6.1 1.0 41 86 369 413 361 423 0.83 C2H2-type zinc ribbon zf-C2H2_8 PF15909.5 98 ZFP82-201 - 532 6.8e-07 29.5 53.6 5 7 0.017 13 6.2 0.7 38 86 396 441 385 447 0.81 C2H2-type zinc ribbon zf-C2H2_8 PF15909.5 98 ZFP82-201 - 532 6.8e-07 29.5 53.6 6 7 2.3e-05 0.017 15.4 4.4 21 90 433 501 421 505 0.80 C2H2-type zinc ribbon zf-C2H2_8 PF15909.5 98 ZFP82-201 - 532 6.8e-07 29.5 53.6 7 7 0.14 1e+02 3.3 2.5 66 88 505 527 500 531 0.87 C2H2-type zinc ribbon # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFP82-201.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFP82-201.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFP82-201.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFP82-201.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFP82-201.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:58:59 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFP82-202.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFP82-202.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFP82-202.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFP82-202.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFP82-202.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:58:59 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZFP82-203 - 475 1.5e-90 293.9 104.9 1 13 1.8e-07 0.00014 22.1 1.7 5 24 103 122 102 123 0.97 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZFP82-203 - 475 1.5e-90 293.9 104.9 2 13 2.1e-09 1.6e-06 28.2 1.4 2 25 128 151 127 152 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZFP82-203 - 475 1.5e-90 293.9 104.9 3 13 2.9e-09 2.2e-06 27.8 2.1 1 24 155 178 155 180 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZFP82-203 - 475 1.5e-90 293.9 104.9 4 13 1.5e-10 1.1e-07 31.9 0.5 1 24 183 206 183 207 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZFP82-203 - 475 1.5e-90 293.9 104.9 5 13 7.4e-11 5.8e-08 32.8 0.3 2 25 212 235 211 236 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZFP82-203 - 475 1.5e-90 293.9 104.9 6 13 7.3e-05 0.057 13.9 1.3 1 25 239 263 239 264 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZFP82-203 - 475 1.5e-90 293.9 104.9 7 13 2.9e-10 2.3e-07 30.9 2.2 1 24 267 290 267 291 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZFP82-203 - 475 1.5e-90 293.9 104.9 8 13 6.9e-12 5.4e-09 36.1 0.7 2 25 296 319 295 320 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZFP82-203 - 475 1.5e-90 293.9 104.9 9 13 1.7e-08 1.3e-05 25.3 2.2 2 25 324 347 323 348 0.89 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZFP82-203 - 475 1.5e-90 293.9 104.9 10 13 2.7e-07 0.00021 21.6 0.1 2 24 352 374 351 375 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZFP82-203 - 475 1.5e-90 293.9 104.9 11 13 1.2e-09 9.6e-07 29.0 0.4 2 24 380 402 379 403 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZFP82-203 - 475 1.5e-90 293.9 104.9 12 13 4.3e-10 3.3e-07 30.4 1.3 2 24 408 430 407 431 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZFP82-203 - 475 1.5e-90 293.9 104.9 13 13 7e-11 5.5e-08 32.9 0.5 2 25 436 459 435 460 0.92 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZFP82-203 - 475 4.8e-58 190.5 103.5 1 13 4.3e-05 0.033 14.6 2.1 1 23 113 135 113 135 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZFP82-203 - 475 4.8e-58 190.5 103.5 2 13 1.4e-08 1.1e-05 25.6 1.6 1 23 141 163 141 163 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZFP82-203 - 475 4.8e-58 190.5 103.5 3 13 0.00021 0.17 12.4 0.2 1 23 169 191 169 191 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZFP82-203 - 475 4.8e-58 190.5 103.5 4 13 6e-08 4.7e-05 23.6 0.2 1 23 197 219 197 219 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZFP82-203 - 475 4.8e-58 190.5 103.5 5 13 6e-08 4.7e-05 23.6 0.8 1 21 225 245 225 246 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZFP82-203 - 475 4.8e-58 190.5 103.5 6 13 0.16 1.2e+02 3.4 5.7 1 23 253 275 253 275 0.79 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZFP82-203 - 475 4.8e-58 190.5 103.5 7 13 1.2e-07 9.1e-05 22.7 0.4 1 23 281 303 281 303 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZFP82-203 - 475 4.8e-58 190.5 103.5 8 13 1.9e-07 0.00015 22.0 3.4 1 23 309 331 309 331 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZFP82-203 - 475 4.8e-58 190.5 103.5 9 13 7e-08 5.4e-05 23.4 0.5 1 23 337 359 337 359 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZFP82-203 - 475 4.8e-58 190.5 103.5 10 13 4.1e-07 0.00032 21.0 0.4 1 23 365 387 365 387 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZFP82-203 - 475 4.8e-58 190.5 103.5 11 13 2.1e-06 0.0016 18.8 1.0 1 23 393 415 393 415 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZFP82-203 - 475 4.8e-58 190.5 103.5 12 13 8e-07 0.00063 20.1 0.6 1 23 421 443 421 443 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZFP82-203 - 475 4.8e-58 190.5 103.5 13 13 1.1e-06 0.00084 19.7 7.3 1 23 449 471 449 471 0.98 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZFP82-203 - 475 1.2e-30 103.5 95.6 1 13 0.00049 0.38 11.7 1.7 1 23 113 135 113 136 0.91 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZFP82-203 - 475 1.2e-30 103.5 95.6 2 13 0.00014 0.11 13.4 1.3 1 23 141 163 141 164 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZFP82-203 - 475 1.2e-30 103.5 95.6 3 13 3.9e-05 0.031 15.1 0.2 1 23 169 191 169 192 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZFP82-203 - 475 1.2e-30 103.5 95.6 4 13 0.00038 0.29 12.1 0.3 1 23 197 219 197 220 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZFP82-203 - 475 1.2e-30 103.5 95.6 5 13 8.8e-05 0.069 14.0 0.7 1 21 225 245 225 246 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZFP82-203 - 475 1.2e-30 103.5 95.6 6 13 8.4e-05 0.065 14.1 2.3 1 23 253 275 253 276 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZFP82-203 - 475 1.2e-30 103.5 95.6 7 13 0.00026 0.2 12.6 0.5 1 23 281 303 281 304 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZFP82-203 - 475 1.2e-30 103.5 95.6 8 13 9.6e-05 0.075 13.9 2.2 1 23 309 331 309 332 0.83 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZFP82-203 - 475 1.2e-30 103.5 95.6 9 13 0.0051 3.9 8.6 0.5 1 23 337 359 337 360 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZFP82-203 - 475 1.2e-30 103.5 95.6 10 13 0.0013 0.98 10.4 0.2 3 23 367 387 365 388 0.91 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZFP82-203 - 475 1.2e-30 103.5 95.6 11 13 0.00097 0.76 10.8 0.8 1 23 393 415 393 416 0.89 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZFP82-203 - 475 1.2e-30 103.5 95.6 12 13 4.7e-05 0.037 14.9 0.7 1 23 421 443 421 444 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZFP82-203 - 475 1.2e-30 103.5 95.6 13 13 0.00036 0.28 12.1 5.8 1 23 449 471 449 472 0.96 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZFP82-203 - 475 6.3e-22 77.1 96.2 1 13 0.00041 0.32 11.1 1.0 2 13 113 124 113 136 0.79 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZFP82-203 - 475 6.3e-22 77.1 96.2 2 13 0.017 13 5.9 0.3 2 12 141 151 141 164 0.86 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZFP82-203 - 475 6.3e-22 77.1 96.2 3 13 0.0017 1.3 9.1 0.7 2 22 169 189 168 191 0.76 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZFP82-203 - 475 6.3e-22 77.1 96.2 4 13 0.0008 0.62 10.1 0.8 2 12 197 207 197 207 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZFP82-203 - 475 6.3e-22 77.1 96.2 5 13 0.00031 0.25 11.4 1.3 2 20 225 243 225 245 0.86 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZFP82-203 - 475 6.3e-22 77.1 96.2 6 13 0.0019 1.4 9.0 2.4 2 12 253 263 252 276 0.76 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZFP82-203 - 475 6.3e-22 77.1 96.2 7 13 0.00023 0.18 11.9 0.4 2 18 281 297 281 304 0.78 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZFP82-203 - 475 6.3e-22 77.1 96.2 8 13 4e-06 0.0031 17.4 2.3 2 22 309 329 309 333 0.89 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZFP82-203 - 475 6.3e-22 77.1 96.2 9 13 0.00011 0.083 12.9 0.9 2 21 337 356 337 359 0.92 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZFP82-203 - 475 6.3e-22 77.1 96.2 10 13 0.0024 1.8 8.6 0.5 2 20 365 383 365 387 0.78 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZFP82-203 - 475 6.3e-22 77.1 96.2 11 13 0.00056 0.43 10.6 0.5 2 12 393 403 393 415 0.84 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZFP82-203 - 475 6.3e-22 77.1 96.2 12 13 0.00058 0.45 10.6 0.4 2 24 421 443 421 446 0.89 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZFP82-203 - 475 6.3e-22 77.1 96.2 13 13 0.0062 4.9 7.3 5.4 2 22 449 469 449 472 0.80 C2H2-type zinc finger Zn-ribbon_8 PF09723.10 40 ZFP82-203 - 475 1.4e-15 57.1 74.2 1 13 0.00017 0.13 12.4 5.7 6 37 113 151 112 154 0.72 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZFP82-203 - 475 1.4e-15 57.1 74.2 2 13 0.0043 3.4 7.9 6.2 6 34 141 176 139 179 0.84 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZFP82-203 - 475 1.4e-15 57.1 74.2 3 13 3.1e-05 0.025 14.7 6.3 6 36 169 206 168 212 0.89 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZFP82-203 - 475 1.4e-15 57.1 74.2 4 13 5.8e-06 0.0046 17.1 3.7 6 37 197 235 196 238 0.90 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZFP82-203 - 475 1.4e-15 57.1 74.2 5 13 0.00025 0.19 11.9 4.2 6 34 225 260 224 263 0.84 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZFP82-203 - 475 1.4e-15 57.1 74.2 6 13 0.00038 0.3 11.3 6.9 6 36 253 292 252 296 0.86 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZFP82-203 - 475 1.4e-15 57.1 74.2 7 13 2.6e-05 0.02 15.0 6.1 6 38 281 320 280 320 0.85 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZFP82-203 - 475 1.4e-15 57.1 74.2 8 13 0.0001 0.082 13.0 3.6 6 35 309 345 308 349 0.85 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZFP82-203 - 475 1.4e-15 57.1 74.2 9 13 0.00091 0.71 10.0 3.0 6 36 337 374 336 378 0.87 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZFP82-203 - 475 1.4e-15 57.1 74.2 10 13 9.2e-06 0.0072 16.4 2.5 6 36 365 402 364 408 0.86 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZFP82-203 - 475 1.4e-15 57.1 74.2 11 13 0.00012 0.09 12.9 3.9 6 35 393 429 392 432 0.82 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZFP82-203 - 475 1.4e-15 57.1 74.2 12 13 0.02 15 5.8 5.8 6 37 421 459 419 462 0.79 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZFP82-203 - 475 1.4e-15 57.1 74.2 13 13 0.059 46 4.2 1.1 6 16 449 459 448 466 0.85 Zinc ribbon domain C1_4 PF07975.12 55 ZFP82-203 - 475 2.2e-09 37.4 59.4 1 10 0.031 24 5.2 0.5 21 49 108 136 91 138 0.77 TFIIH C1-like domain C1_4 PF07975.12 55 ZFP82-203 - 475 2.2e-09 37.4 59.4 2 10 1.8e-05 0.014 15.6 3.3 1 48 142 191 142 194 0.89 TFIIH C1-like domain C1_4 PF07975.12 55 ZFP82-203 - 475 2.2e-09 37.4 59.4 3 10 0.02 16 5.9 0.0 25 49 196 220 192 222 0.90 TFIIH C1-like domain C1_4 PF07975.12 55 ZFP82-203 - 475 2.2e-09 37.4 59.4 4 10 4.6e-05 0.036 14.3 2.0 2 49 227 276 226 279 0.88 TFIIH C1-like domain C1_4 PF07975.12 55 ZFP82-203 - 475 2.2e-09 37.4 59.4 5 10 0.02 16 5.8 3.1 1 48 282 331 282 333 0.79 TFIIH C1-like domain C1_4 PF07975.12 55 ZFP82-203 - 475 2.2e-09 37.4 59.4 6 10 0.19 1.5e+02 2.8 4.2 2 48 311 359 310 362 0.77 TFIIH C1-like domain C1_4 PF07975.12 55 ZFP82-203 - 475 2.2e-09 37.4 59.4 7 10 0.026 20 5.5 2.4 2 48 339 387 338 390 0.79 TFIIH C1-like domain C1_4 PF07975.12 55 ZFP82-203 - 475 2.2e-09 37.4 59.4 8 10 0.0011 0.87 9.9 1.1 2 49 367 416 366 419 0.84 TFIIH C1-like domain C1_4 PF07975.12 55 ZFP82-203 - 475 2.2e-09 37.4 59.4 9 10 0.0042 3.3 8.0 1.3 2 48 395 443 394 446 0.79 TFIIH C1-like domain C1_4 PF07975.12 55 ZFP82-203 - 475 2.2e-09 37.4 59.4 10 10 0.14 1.1e+02 3.2 6.1 2 36 423 459 422 473 0.67 TFIIH C1-like domain XPA_N PF01286.18 32 ZFP82-203 - 475 2.8e-09 36.9 58.5 1 13 0.012 9.4 6.4 0.1 3 11 114 122 112 125 0.89 XPA protein N-terminal XPA_N PF01286.18 32 ZFP82-203 - 475 2.8e-09 36.9 58.5 2 13 0.077 60 3.8 0.1 3 13 142 152 140 157 0.86 XPA protein N-terminal XPA_N PF01286.18 32 ZFP82-203 - 475 2.8e-09 36.9 58.5 3 13 0.079 62 3.8 0.5 3 11 170 178 169 179 0.90 XPA protein N-terminal XPA_N PF01286.18 32 ZFP82-203 - 475 2.8e-09 36.9 58.5 4 13 0.013 9.9 6.3 0.2 3 11 198 206 196 208 0.89 XPA protein N-terminal XPA_N PF01286.18 32 ZFP82-203 - 475 2.8e-09 36.9 58.5 5 13 0.014 11 6.2 0.1 3 12 226 235 224 236 0.87 XPA protein N-terminal XPA_N PF01286.18 32 ZFP82-203 - 475 2.8e-09 36.9 58.5 6 13 0.023 18 5.5 1.5 3 12 254 263 253 266 0.92 XPA protein N-terminal XPA_N PF01286.18 32 ZFP82-203 - 475 2.8e-09 36.9 58.5 7 13 0.013 9.9 6.3 0.2 3 11 282 290 280 292 0.89 XPA protein N-terminal XPA_N PF01286.18 32 ZFP82-203 - 475 2.8e-09 36.9 58.5 8 13 0.0045 3.5 7.7 0.1 3 13 310 320 308 324 0.85 XPA protein N-terminal XPA_N PF01286.18 32 ZFP82-203 - 475 2.8e-09 36.9 58.5 9 13 0.12 93 3.2 0.1 3 12 338 347 336 355 0.84 XPA protein N-terminal XPA_N PF01286.18 32 ZFP82-203 - 475 2.8e-09 36.9 58.5 10 13 0.01 8.2 6.6 0.1 3 11 366 374 364 383 0.81 XPA protein N-terminal XPA_N PF01286.18 32 ZFP82-203 - 475 2.8e-09 36.9 58.5 11 13 0.011 8.6 6.5 0.2 3 11 394 402 392 404 0.90 XPA protein N-terminal XPA_N PF01286.18 32 ZFP82-203 - 475 2.8e-09 36.9 58.5 12 13 0.048 38 4.4 0.2 3 11 422 430 420 439 0.81 XPA protein N-terminal XPA_N PF01286.18 32 ZFP82-203 - 475 2.8e-09 36.9 58.5 13 13 0.021 17 5.6 0.2 3 12 450 459 448 466 0.87 XPA protein N-terminal zf-C2H2_8 PF15909.5 98 ZFP82-203 - 475 3e-07 30.6 53.7 1 9 0.00012 0.092 13.1 4.6 9 88 84 162 76 168 0.76 C2H2-type zinc ribbon zf-C2H2_8 PF15909.5 98 ZFP82-203 - 475 3e-07 30.6 53.7 2 9 0.00023 0.18 12.2 1.3 31 87 164 217 152 225 0.72 C2H2-type zinc ribbon zf-C2H2_8 PF15909.5 98 ZFP82-203 - 475 3e-07 30.6 53.7 3 9 0.026 20 5.6 1.5 41 90 200 248 195 255 0.84 C2H2-type zinc ribbon zf-C2H2_8 PF15909.5 98 ZFP82-203 - 475 3e-07 30.6 53.7 4 9 0.012 9.3 6.6 5.0 23 87 238 301 224 307 0.72 C2H2-type zinc ribbon zf-C2H2_8 PF15909.5 98 ZFP82-203 - 475 3e-07 30.6 53.7 5 9 0.017 14 6.1 0.9 41 86 312 356 305 363 0.83 C2H2-type zinc ribbon zf-C2H2_8 PF15909.5 98 ZFP82-203 - 475 3e-07 30.6 53.7 6 9 0.022 17 5.8 1.8 37 86 338 384 322 391 0.79 C2H2-type zinc ribbon zf-C2H2_8 PF15909.5 98 ZFP82-203 - 475 3e-07 30.6 53.7 7 9 0.0014 1.1 9.6 0.9 39 86 366 412 349 420 0.74 C2H2-type zinc ribbon zf-C2H2_8 PF15909.5 98 ZFP82-203 - 475 3e-07 30.6 53.7 8 9 1.3e-05 0.01 16.1 3.6 22 90 377 444 369 448 0.80 C2H2-type zinc ribbon zf-C2H2_8 PF15909.5 98 ZFP82-203 - 475 3e-07 30.6 53.7 9 9 0.12 97 3.4 2.6 66 88 448 470 443 474 0.87 C2H2-type zinc ribbon # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFP82-203.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFP82-203.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFP82-203.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFP82-203.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFP82-203.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:59:00 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZFP90-201 - 636 9.5e-92 297.7 100.6 1 16 4.2e-05 0.037 14.5 2.5 11 26 207 222 206 222 0.90 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZFP90-201 - 636 9.5e-92 297.7 100.6 2 16 0.00053 0.48 11.0 6.7 1 24 225 263 225 264 0.67 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZFP90-201 - 636 9.5e-92 297.7 100.6 3 16 3.2e-11 2.9e-08 33.8 0.8 2 26 269 293 268 293 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZFP90-201 - 636 9.5e-92 297.7 100.6 4 16 6.9e-09 6.2e-06 26.4 0.2 7 24 302 319 297 321 0.89 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZFP90-201 - 636 9.5e-92 297.7 100.6 5 16 1.2e-10 1.1e-07 32.0 0.8 1 26 324 349 324 349 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZFP90-201 - 636 9.5e-92 297.7 100.6 6 16 1.1e-09 9.8e-07 28.9 0.5 1 25 352 376 352 377 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZFP90-201 - 636 9.5e-92 297.7 100.6 7 16 3.3e-11 3e-08 33.7 0.1 1 25 380 404 380 405 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZFP90-201 - 636 9.5e-92 297.7 100.6 8 16 0.0011 1 9.9 0.3 1 21 408 428 408 433 0.80 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZFP90-201 - 636 9.5e-92 297.7 100.6 9 16 0.13 1.1e+02 3.4 0.2 12 26 447 461 443 461 0.86 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZFP90-201 - 636 9.5e-92 297.7 100.6 10 16 0.00033 0.3 11.6 0.0 2 18 465 481 464 483 0.89 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZFP90-201 - 636 9.5e-92 297.7 100.6 11 16 1.7e-08 1.5e-05 25.2 0.3 8 26 490 508 488 508 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZFP90-201 - 636 9.5e-92 297.7 100.6 12 16 5.4e-09 4.9e-06 26.7 0.9 4 25 514 535 511 536 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZFP90-201 - 636 9.5e-92 297.7 100.6 13 16 5.7e-12 5.1e-09 36.2 0.2 1 25 539 563 539 564 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZFP90-201 - 636 9.5e-92 297.7 100.6 14 16 2.2e-10 2e-07 31.1 0.4 2 25 568 591 567 592 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZFP90-201 - 636 9.5e-92 297.7 100.6 15 16 8.5e-10 7.6e-07 29.3 1.6 3 25 597 619 595 620 0.90 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZFP90-201 - 636 9.5e-92 297.7 100.6 16 16 0.067 60 4.3 0.4 1 11 623 633 623 636 0.85 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZFP90-201 - 636 1.1e-64 211.4 106.6 1 15 9.2 8.2e+03 -2.3 0.1 12 20 130 138 129 138 0.85 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZFP90-201 - 636 1.1e-64 211.4 106.6 2 15 1.3e-06 0.0012 19.2 4.5 1 23 211 233 211 233 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZFP90-201 - 636 1.1e-64 211.4 106.6 3 15 0.00017 0.15 12.6 1.2 1 23 254 276 254 276 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZFP90-201 - 636 1.1e-64 211.4 106.6 4 15 2e-06 0.0018 18.6 0.5 1 23 282 304 282 304 0.94 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZFP90-201 - 636 1.1e-64 211.4 106.6 5 15 1.4e-08 1.3e-05 25.4 0.6 1 23 310 332 310 332 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZFP90-201 - 636 1.1e-64 211.4 106.6 6 15 1.1e-05 0.01 16.3 2.2 1 23 338 360 338 360 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZFP90-201 - 636 1.1e-64 211.4 106.6 7 15 1.4e-08 1.2e-05 25.4 2.5 1 23 366 388 366 388 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZFP90-201 - 636 1.1e-64 211.4 106.6 8 15 1.5e-07 0.00014 22.1 0.2 1 23 394 416 394 416 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZFP90-201 - 636 1.1e-64 211.4 106.6 9 15 1e-05 0.009 16.4 2.5 1 23 450 472 450 472 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZFP90-201 - 636 1.1e-64 211.4 106.6 10 15 4.3 3.8e+03 -1.3 0.0 5 13 479 487 477 488 0.86 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZFP90-201 - 636 1.1e-64 211.4 106.6 11 15 1.2e-07 0.00011 22.5 2.0 1 23 497 519 497 519 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZFP90-201 - 636 1.1e-64 211.4 106.6 12 15 8.4e-09 7.6e-06 26.1 0.4 1 23 525 547 525 547 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZFP90-201 - 636 1.1e-64 211.4 106.6 13 15 2.4e-07 0.00021 21.5 0.2 1 23 553 575 553 575 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZFP90-201 - 636 1.1e-64 211.4 106.6 14 15 8.5e-08 7.6e-05 22.9 1.8 1 23 581 603 581 603 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZFP90-201 - 636 1.1e-64 211.4 106.6 15 15 1.4e-09 1.2e-06 28.6 1.3 1 23 609 631 609 631 0.98 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZFP90-201 - 636 1.4e-38 128.2 98.1 1 13 0.00059 0.53 11.3 3.7 1 23 211 233 211 234 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZFP90-201 - 636 1.4e-38 128.2 98.1 2 13 0.0046 4.1 8.5 1.0 1 23 254 276 254 277 0.84 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZFP90-201 - 636 1.4e-38 128.2 98.1 3 13 7.8e-05 0.07 14.0 0.6 1 23 282 304 282 305 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZFP90-201 - 636 1.4e-38 128.2 98.1 4 13 8.7e-06 0.0078 17.0 0.7 1 23 310 332 310 333 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZFP90-201 - 636 1.4e-38 128.2 98.1 5 13 0.00017 0.15 13.0 1.5 1 23 338 360 338 361 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZFP90-201 - 636 1.4e-38 128.2 98.1 6 13 1.9e-06 0.0017 19.1 2.8 1 23 366 388 366 389 0.97 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZFP90-201 - 636 1.4e-38 128.2 98.1 7 13 2.3e-06 0.0021 18.8 0.3 1 23 394 416 394 417 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZFP90-201 - 636 1.4e-38 128.2 98.1 8 13 0.0025 2.2 9.3 1.1 1 23 450 472 450 473 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZFP90-201 - 636 1.4e-38 128.2 98.1 9 13 0.00011 0.094 13.6 1.5 1 23 497 519 497 520 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZFP90-201 - 636 1.4e-38 128.2 98.1 10 13 5.4e-06 0.0048 17.6 0.4 1 23 525 547 525 548 0.97 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZFP90-201 - 636 1.4e-38 128.2 98.1 11 13 7.4e-06 0.0066 17.2 0.2 1 23 553 575 553 576 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZFP90-201 - 636 1.4e-38 128.2 98.1 12 13 7.1e-05 0.064 14.1 1.0 1 23 581 603 581 604 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZFP90-201 - 636 1.4e-38 128.2 98.1 13 13 4.1e-06 0.0037 18.0 1.0 1 23 609 631 609 632 0.95 C2H2-type zinc finger KRAB PF01352.27 42 ZFP90-201 - 636 1.4e-25 88.6 0.3 1 1 3.7e-28 3.4e-25 87.4 0.3 1 42 13 54 13 54 0.99 KRAB box zf-C2H2_6 PF13912.6 27 ZFP90-201 - 636 4.8e-19 67.9 96.8 1 13 0.014 13 6.0 4.1 2 26 211 235 211 236 0.95 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZFP90-201 - 636 4.8e-19 67.9 96.8 2 13 0.0028 2.5 8.2 0.4 1 11 253 263 253 276 0.90 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZFP90-201 - 636 4.8e-19 67.9 96.8 3 13 0.00023 0.2 11.7 1.4 2 21 282 301 282 306 0.88 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZFP90-201 - 636 4.8e-19 67.9 96.8 4 13 0.0016 1.5 8.9 0.7 2 21 310 329 310 334 0.83 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZFP90-201 - 636 4.8e-19 67.9 96.8 5 13 3.2e-05 0.029 14.4 1.6 2 24 338 360 338 363 0.91 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZFP90-201 - 636 4.8e-19 67.9 96.8 6 13 0.00021 0.19 11.8 3.3 2 24 366 388 366 391 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZFP90-201 - 636 4.8e-19 67.9 96.8 7 13 9.4e-05 0.085 12.9 0.3 2 25 394 417 394 419 0.92 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZFP90-201 - 636 4.8e-19 67.9 96.8 8 13 1.6 1.4e+03 -0.6 0.5 2 15 450 463 449 474 0.77 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZFP90-201 - 636 4.8e-19 67.9 96.8 9 13 0.00097 0.87 9.7 1.1 2 22 497 517 497 521 0.85 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZFP90-201 - 636 4.8e-19 67.9 96.8 10 13 2.6e-05 0.024 14.7 0.7 2 24 525 547 525 550 0.95 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZFP90-201 - 636 4.8e-19 67.9 96.8 11 13 0.0084 7.5 6.7 0.3 2 24 553 575 553 578 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZFP90-201 - 636 4.8e-19 67.9 96.8 12 13 0.00044 0.4 10.7 0.7 2 22 581 601 581 605 0.87 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZFP90-201 - 636 4.8e-19 67.9 96.8 13 13 0.00011 0.1 12.6 1.5 2 24 609 631 609 633 0.90 C2H2-type zinc finger zf-C2H2_jaz PF12171.8 27 ZFP90-201 - 636 6.5e-17 61.3 61.2 1 12 0.0011 1 9.7 3.1 2 25 211 234 210 234 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZFP90-201 - 636 6.5e-17 61.3 61.2 2 12 0.1 91 3.5 0.5 2 21 254 273 253 274 0.86 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZFP90-201 - 636 6.5e-17 61.3 61.2 3 12 0.00049 0.44 10.9 0.0 2 22 282 302 281 302 0.95 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZFP90-201 - 636 6.5e-17 61.3 61.2 4 12 0.00049 0.44 10.9 0.0 4 22 312 330 309 330 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZFP90-201 - 636 6.5e-17 61.3 61.2 5 12 0.0076 6.8 7.1 0.0 2 24 338 360 337 361 0.90 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZFP90-201 - 636 6.5e-17 61.3 61.2 6 12 0.0019 1.7 9.0 1.1 2 24 366 388 365 388 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZFP90-201 - 636 6.5e-17 61.3 61.2 7 12 0.53 4.7e+02 1.2 0.0 2 11 394 403 393 405 0.88 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZFP90-201 - 636 6.5e-17 61.3 61.2 8 12 0.016 14 6.1 0.2 4 20 499 515 496 515 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZFP90-201 - 636 6.5e-17 61.3 61.2 9 12 0.0038 3.4 8.1 0.1 2 24 525 547 524 547 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZFP90-201 - 636 6.5e-17 61.3 61.2 10 12 0.00037 0.33 11.3 0.1 2 24 553 575 552 575 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZFP90-201 - 636 6.5e-17 61.3 61.2 11 12 0.027 24 5.3 0.3 2 22 581 601 580 601 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZFP90-201 - 636 6.5e-17 61.3 61.2 12 12 3.8e-05 0.034 14.4 0.1 2 22 609 629 608 629 0.93 Zinc-finger double-stranded RNA-binding Zn-ribbon_8 PF09723.10 40 ZFP90-201 - 636 1.3e-10 41.2 67.2 1 10 0.052 46 4.2 0.2 6 22 211 227 210 233 0.77 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZFP90-201 - 636 1.3e-10 41.2 67.2 2 10 0.00048 0.43 10.7 1.2 7 36 255 291 253 297 0.90 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZFP90-201 - 636 1.3e-10 41.2 67.2 3 10 0.00042 0.37 10.9 1.3 6 35 310 346 309 349 0.90 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZFP90-201 - 636 1.3e-10 41.2 67.2 4 10 0.002 1.8 8.7 5.5 6 38 338 377 337 378 0.75 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZFP90-201 - 636 1.3e-10 41.2 67.2 5 10 0.087 78 3.5 6.1 6 34 366 401 365 405 0.70 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZFP90-201 - 636 1.3e-10 41.2 67.2 6 10 0.001 0.9 9.7 2.0 6 21 450 471 449 487 0.69 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZFP90-201 - 636 1.3e-10 41.2 67.2 7 10 0.00014 0.13 12.4 4.3 6 38 497 536 496 538 0.88 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZFP90-201 - 636 1.3e-10 41.2 67.2 8 10 0.0018 1.6 8.9 0.6 6 23 525 542 524 548 0.81 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZFP90-201 - 636 1.3e-10 41.2 67.2 9 10 0.00048 0.43 10.7 4.0 6 38 553 592 552 593 0.76 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZFP90-201 - 636 1.3e-10 41.2 67.2 10 10 1.4e-05 0.013 15.6 4.0 6 38 581 620 580 622 0.92 Zinc ribbon domain zf-C2H2_11 PF16622.5 29 ZFP90-201 - 636 7.1e-09 35.3 65.5 1 13 0.63 5.6e+02 0.4 0.9 5 23 211 229 209 234 0.89 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZFP90-201 - 636 7.1e-09 35.3 65.5 2 13 0.23 2.1e+02 1.8 0.3 6 26 255 275 253 276 0.74 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZFP90-201 - 636 7.1e-09 35.3 65.5 3 13 0.97 8.7e+02 -0.2 0.2 7 23 284 300 281 301 0.85 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZFP90-201 - 636 7.1e-09 35.3 65.5 4 13 0.0017 1.5 8.6 1.2 5 26 310 331 307 332 0.93 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZFP90-201 - 636 7.1e-09 35.3 65.5 5 13 0.0061 5.4 6.9 0.3 5 23 338 356 335 359 0.90 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZFP90-201 - 636 7.1e-09 35.3 65.5 6 13 0.0018 1.6 8.5 0.8 5 23 366 384 363 387 0.90 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZFP90-201 - 636 7.1e-09 35.3 65.5 7 13 2.4e-05 0.022 14.5 0.5 7 26 396 415 392 417 0.91 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZFP90-201 - 636 7.1e-09 35.3 65.5 8 13 0.16 1.5e+02 2.3 0.0 4 15 449 460 446 471 0.86 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZFP90-201 - 636 7.1e-09 35.3 65.5 9 13 0.16 1.5e+02 2.3 0.2 5 23 497 515 494 519 0.74 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZFP90-201 - 636 7.1e-09 35.3 65.5 10 13 0.0061 5.4 6.9 0.1 6 23 526 543 523 546 0.91 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZFP90-201 - 636 7.1e-09 35.3 65.5 11 13 0.0053 4.7 7.0 0.1 6 23 554 571 551 574 0.91 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZFP90-201 - 636 7.1e-09 35.3 65.5 12 13 0.059 53 3.7 0.1 6 26 582 602 579 603 0.79 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZFP90-201 - 636 7.1e-09 35.3 65.5 13 13 0.00016 0.15 11.9 0.5 7 26 611 630 608 631 0.94 zinc-finger C2H2-type # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFP90-201.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFP90-201.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFP90-201.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFP90-201.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFP90-201.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:59:00 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFP90-202.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFP90-202.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFP90-202.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFP90-202.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFP90-202.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:59:00 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZFP90-203 - 636 9.5e-92 297.7 100.6 1 16 4.2e-05 0.037 14.5 2.5 11 26 207 222 206 222 0.90 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZFP90-203 - 636 9.5e-92 297.7 100.6 2 16 0.00053 0.48 11.0 6.7 1 24 225 263 225 264 0.67 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZFP90-203 - 636 9.5e-92 297.7 100.6 3 16 3.2e-11 2.9e-08 33.8 0.8 2 26 269 293 268 293 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZFP90-203 - 636 9.5e-92 297.7 100.6 4 16 6.9e-09 6.2e-06 26.4 0.2 7 24 302 319 297 321 0.89 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZFP90-203 - 636 9.5e-92 297.7 100.6 5 16 1.2e-10 1.1e-07 32.0 0.8 1 26 324 349 324 349 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZFP90-203 - 636 9.5e-92 297.7 100.6 6 16 1.1e-09 9.8e-07 28.9 0.5 1 25 352 376 352 377 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZFP90-203 - 636 9.5e-92 297.7 100.6 7 16 3.3e-11 3e-08 33.7 0.1 1 25 380 404 380 405 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZFP90-203 - 636 9.5e-92 297.7 100.6 8 16 0.0011 1 9.9 0.3 1 21 408 428 408 433 0.80 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZFP90-203 - 636 9.5e-92 297.7 100.6 9 16 0.13 1.1e+02 3.4 0.2 12 26 447 461 443 461 0.86 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZFP90-203 - 636 9.5e-92 297.7 100.6 10 16 0.00033 0.3 11.6 0.0 2 18 465 481 464 483 0.89 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZFP90-203 - 636 9.5e-92 297.7 100.6 11 16 1.7e-08 1.5e-05 25.2 0.3 8 26 490 508 488 508 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZFP90-203 - 636 9.5e-92 297.7 100.6 12 16 5.4e-09 4.9e-06 26.7 0.9 4 25 514 535 511 536 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZFP90-203 - 636 9.5e-92 297.7 100.6 13 16 5.7e-12 5.1e-09 36.2 0.2 1 25 539 563 539 564 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZFP90-203 - 636 9.5e-92 297.7 100.6 14 16 2.2e-10 2e-07 31.1 0.4 2 25 568 591 567 592 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZFP90-203 - 636 9.5e-92 297.7 100.6 15 16 8.5e-10 7.6e-07 29.3 1.6 3 25 597 619 595 620 0.90 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZFP90-203 - 636 9.5e-92 297.7 100.6 16 16 0.067 60 4.3 0.4 1 11 623 633 623 636 0.85 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZFP90-203 - 636 1.1e-64 211.4 106.6 1 15 9.2 8.2e+03 -2.3 0.1 12 20 130 138 129 138 0.85 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZFP90-203 - 636 1.1e-64 211.4 106.6 2 15 1.3e-06 0.0012 19.2 4.5 1 23 211 233 211 233 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZFP90-203 - 636 1.1e-64 211.4 106.6 3 15 0.00017 0.15 12.6 1.2 1 23 254 276 254 276 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZFP90-203 - 636 1.1e-64 211.4 106.6 4 15 2e-06 0.0018 18.6 0.5 1 23 282 304 282 304 0.94 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZFP90-203 - 636 1.1e-64 211.4 106.6 5 15 1.4e-08 1.3e-05 25.4 0.6 1 23 310 332 310 332 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZFP90-203 - 636 1.1e-64 211.4 106.6 6 15 1.1e-05 0.01 16.3 2.2 1 23 338 360 338 360 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZFP90-203 - 636 1.1e-64 211.4 106.6 7 15 1.4e-08 1.2e-05 25.4 2.5 1 23 366 388 366 388 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZFP90-203 - 636 1.1e-64 211.4 106.6 8 15 1.5e-07 0.00014 22.1 0.2 1 23 394 416 394 416 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZFP90-203 - 636 1.1e-64 211.4 106.6 9 15 1e-05 0.009 16.4 2.5 1 23 450 472 450 472 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZFP90-203 - 636 1.1e-64 211.4 106.6 10 15 4.3 3.8e+03 -1.3 0.0 5 13 479 487 477 488 0.86 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZFP90-203 - 636 1.1e-64 211.4 106.6 11 15 1.2e-07 0.00011 22.5 2.0 1 23 497 519 497 519 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZFP90-203 - 636 1.1e-64 211.4 106.6 12 15 8.4e-09 7.6e-06 26.1 0.4 1 23 525 547 525 547 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZFP90-203 - 636 1.1e-64 211.4 106.6 13 15 2.4e-07 0.00021 21.5 0.2 1 23 553 575 553 575 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZFP90-203 - 636 1.1e-64 211.4 106.6 14 15 8.5e-08 7.6e-05 22.9 1.8 1 23 581 603 581 603 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZFP90-203 - 636 1.1e-64 211.4 106.6 15 15 1.4e-09 1.2e-06 28.6 1.3 1 23 609 631 609 631 0.98 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZFP90-203 - 636 1.4e-38 128.2 98.1 1 13 0.00059 0.53 11.3 3.7 1 23 211 233 211 234 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZFP90-203 - 636 1.4e-38 128.2 98.1 2 13 0.0046 4.1 8.5 1.0 1 23 254 276 254 277 0.84 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZFP90-203 - 636 1.4e-38 128.2 98.1 3 13 7.8e-05 0.07 14.0 0.6 1 23 282 304 282 305 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZFP90-203 - 636 1.4e-38 128.2 98.1 4 13 8.7e-06 0.0078 17.0 0.7 1 23 310 332 310 333 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZFP90-203 - 636 1.4e-38 128.2 98.1 5 13 0.00017 0.15 13.0 1.5 1 23 338 360 338 361 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZFP90-203 - 636 1.4e-38 128.2 98.1 6 13 1.9e-06 0.0017 19.1 2.8 1 23 366 388 366 389 0.97 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZFP90-203 - 636 1.4e-38 128.2 98.1 7 13 2.3e-06 0.0021 18.8 0.3 1 23 394 416 394 417 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZFP90-203 - 636 1.4e-38 128.2 98.1 8 13 0.0025 2.2 9.3 1.1 1 23 450 472 450 473 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZFP90-203 - 636 1.4e-38 128.2 98.1 9 13 0.00011 0.094 13.6 1.5 1 23 497 519 497 520 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZFP90-203 - 636 1.4e-38 128.2 98.1 10 13 5.4e-06 0.0048 17.6 0.4 1 23 525 547 525 548 0.97 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZFP90-203 - 636 1.4e-38 128.2 98.1 11 13 7.4e-06 0.0066 17.2 0.2 1 23 553 575 553 576 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZFP90-203 - 636 1.4e-38 128.2 98.1 12 13 7.1e-05 0.064 14.1 1.0 1 23 581 603 581 604 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZFP90-203 - 636 1.4e-38 128.2 98.1 13 13 4.1e-06 0.0037 18.0 1.0 1 23 609 631 609 632 0.95 C2H2-type zinc finger KRAB PF01352.27 42 ZFP90-203 - 636 1.4e-25 88.6 0.3 1 1 3.7e-28 3.4e-25 87.4 0.3 1 42 13 54 13 54 0.99 KRAB box zf-C2H2_6 PF13912.6 27 ZFP90-203 - 636 4.8e-19 67.9 96.8 1 13 0.014 13 6.0 4.1 2 26 211 235 211 236 0.95 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZFP90-203 - 636 4.8e-19 67.9 96.8 2 13 0.0028 2.5 8.2 0.4 1 11 253 263 253 276 0.90 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZFP90-203 - 636 4.8e-19 67.9 96.8 3 13 0.00023 0.2 11.7 1.4 2 21 282 301 282 306 0.88 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZFP90-203 - 636 4.8e-19 67.9 96.8 4 13 0.0016 1.5 8.9 0.7 2 21 310 329 310 334 0.83 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZFP90-203 - 636 4.8e-19 67.9 96.8 5 13 3.2e-05 0.029 14.4 1.6 2 24 338 360 338 363 0.91 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZFP90-203 - 636 4.8e-19 67.9 96.8 6 13 0.00021 0.19 11.8 3.3 2 24 366 388 366 391 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZFP90-203 - 636 4.8e-19 67.9 96.8 7 13 9.4e-05 0.085 12.9 0.3 2 25 394 417 394 419 0.92 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZFP90-203 - 636 4.8e-19 67.9 96.8 8 13 1.6 1.4e+03 -0.6 0.5 2 15 450 463 449 474 0.77 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZFP90-203 - 636 4.8e-19 67.9 96.8 9 13 0.00097 0.87 9.7 1.1 2 22 497 517 497 521 0.85 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZFP90-203 - 636 4.8e-19 67.9 96.8 10 13 2.6e-05 0.024 14.7 0.7 2 24 525 547 525 550 0.95 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZFP90-203 - 636 4.8e-19 67.9 96.8 11 13 0.0084 7.5 6.7 0.3 2 24 553 575 553 578 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZFP90-203 - 636 4.8e-19 67.9 96.8 12 13 0.00044 0.4 10.7 0.7 2 22 581 601 581 605 0.87 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZFP90-203 - 636 4.8e-19 67.9 96.8 13 13 0.00011 0.1 12.6 1.5 2 24 609 631 609 633 0.90 C2H2-type zinc finger zf-C2H2_jaz PF12171.8 27 ZFP90-203 - 636 6.5e-17 61.3 61.2 1 12 0.0011 1 9.7 3.1 2 25 211 234 210 234 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZFP90-203 - 636 6.5e-17 61.3 61.2 2 12 0.1 91 3.5 0.5 2 21 254 273 253 274 0.86 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZFP90-203 - 636 6.5e-17 61.3 61.2 3 12 0.00049 0.44 10.9 0.0 2 22 282 302 281 302 0.95 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZFP90-203 - 636 6.5e-17 61.3 61.2 4 12 0.00049 0.44 10.9 0.0 4 22 312 330 309 330 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZFP90-203 - 636 6.5e-17 61.3 61.2 5 12 0.0076 6.8 7.1 0.0 2 24 338 360 337 361 0.90 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZFP90-203 - 636 6.5e-17 61.3 61.2 6 12 0.0019 1.7 9.0 1.1 2 24 366 388 365 388 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZFP90-203 - 636 6.5e-17 61.3 61.2 7 12 0.53 4.7e+02 1.2 0.0 2 11 394 403 393 405 0.88 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZFP90-203 - 636 6.5e-17 61.3 61.2 8 12 0.016 14 6.1 0.2 4 20 499 515 496 515 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZFP90-203 - 636 6.5e-17 61.3 61.2 9 12 0.0038 3.4 8.1 0.1 2 24 525 547 524 547 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZFP90-203 - 636 6.5e-17 61.3 61.2 10 12 0.00037 0.33 11.3 0.1 2 24 553 575 552 575 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZFP90-203 - 636 6.5e-17 61.3 61.2 11 12 0.027 24 5.3 0.3 2 22 581 601 580 601 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZFP90-203 - 636 6.5e-17 61.3 61.2 12 12 3.8e-05 0.034 14.4 0.1 2 22 609 629 608 629 0.93 Zinc-finger double-stranded RNA-binding Zn-ribbon_8 PF09723.10 40 ZFP90-203 - 636 1.3e-10 41.2 67.2 1 10 0.052 46 4.2 0.2 6 22 211 227 210 233 0.77 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZFP90-203 - 636 1.3e-10 41.2 67.2 2 10 0.00048 0.43 10.7 1.2 7 36 255 291 253 297 0.90 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZFP90-203 - 636 1.3e-10 41.2 67.2 3 10 0.00042 0.37 10.9 1.3 6 35 310 346 309 349 0.90 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZFP90-203 - 636 1.3e-10 41.2 67.2 4 10 0.002 1.8 8.7 5.5 6 38 338 377 337 378 0.75 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZFP90-203 - 636 1.3e-10 41.2 67.2 5 10 0.087 78 3.5 6.1 6 34 366 401 365 405 0.70 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZFP90-203 - 636 1.3e-10 41.2 67.2 6 10 0.001 0.9 9.7 2.0 6 21 450 471 449 487 0.69 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZFP90-203 - 636 1.3e-10 41.2 67.2 7 10 0.00014 0.13 12.4 4.3 6 38 497 536 496 538 0.88 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZFP90-203 - 636 1.3e-10 41.2 67.2 8 10 0.0018 1.6 8.9 0.6 6 23 525 542 524 548 0.81 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZFP90-203 - 636 1.3e-10 41.2 67.2 9 10 0.00048 0.43 10.7 4.0 6 38 553 592 552 593 0.76 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZFP90-203 - 636 1.3e-10 41.2 67.2 10 10 1.4e-05 0.013 15.6 4.0 6 38 581 620 580 622 0.92 Zinc ribbon domain zf-C2H2_11 PF16622.5 29 ZFP90-203 - 636 7.1e-09 35.3 65.5 1 13 0.63 5.6e+02 0.4 0.9 5 23 211 229 209 234 0.89 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZFP90-203 - 636 7.1e-09 35.3 65.5 2 13 0.23 2.1e+02 1.8 0.3 6 26 255 275 253 276 0.74 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZFP90-203 - 636 7.1e-09 35.3 65.5 3 13 0.97 8.7e+02 -0.2 0.2 7 23 284 300 281 301 0.85 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZFP90-203 - 636 7.1e-09 35.3 65.5 4 13 0.0017 1.5 8.6 1.2 5 26 310 331 307 332 0.93 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZFP90-203 - 636 7.1e-09 35.3 65.5 5 13 0.0061 5.4 6.9 0.3 5 23 338 356 335 359 0.90 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZFP90-203 - 636 7.1e-09 35.3 65.5 6 13 0.0018 1.6 8.5 0.8 5 23 366 384 363 387 0.90 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZFP90-203 - 636 7.1e-09 35.3 65.5 7 13 2.4e-05 0.022 14.5 0.5 7 26 396 415 392 417 0.91 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZFP90-203 - 636 7.1e-09 35.3 65.5 8 13 0.16 1.5e+02 2.3 0.0 4 15 449 460 446 471 0.86 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZFP90-203 - 636 7.1e-09 35.3 65.5 9 13 0.16 1.5e+02 2.3 0.2 5 23 497 515 494 519 0.74 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZFP90-203 - 636 7.1e-09 35.3 65.5 10 13 0.0061 5.4 6.9 0.1 6 23 526 543 523 546 0.91 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZFP90-203 - 636 7.1e-09 35.3 65.5 11 13 0.0053 4.7 7.0 0.1 6 23 554 571 551 574 0.91 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZFP90-203 - 636 7.1e-09 35.3 65.5 12 13 0.059 53 3.7 0.1 6 26 582 602 579 603 0.79 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZFP90-203 - 636 7.1e-09 35.3 65.5 13 13 0.00016 0.15 11.9 0.5 7 26 611 630 608 631 0.94 zinc-finger C2H2-type # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFP90-203.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFP90-203.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFP90-203.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFP90-203.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFP90-203.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:59:01 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- KRAB PF01352.27 42 ZFP90-204 - 93 6.8e-27 92.8 0.3 1 2 7.8e-31 1.4e-26 91.8 0.3 1 42 13 54 13 54 0.99 KRAB box KRAB PF01352.27 42 ZFP90-204 - 93 6.8e-27 92.8 0.3 2 2 0.31 5.5e+03 -2.9 0.0 9 15 87 93 86 93 0.85 KRAB box # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFP90-204.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFP90-204.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFP90-204.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFP90-204.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFP90-204.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:59:01 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZFP90-205 - 224 1.6e-47 157.9 42.2 1 9 0.64 3.3e+02 2.0 0.0 6 21 1 16 1 21 0.76 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZFP90-205 - 224 1.6e-47 157.9 42.2 2 9 0.066 34 5.1 0.2 12 26 35 49 32 49 0.86 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZFP90-205 - 224 1.6e-47 157.9 42.2 3 9 0.00016 0.084 13.3 0.0 2 18 53 69 52 71 0.89 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZFP90-205 - 224 1.6e-47 157.9 42.2 4 9 8.3e-09 4.2e-06 26.9 0.3 8 26 78 96 76 96 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZFP90-205 - 224 1.6e-47 157.9 42.2 5 9 2.6e-09 1.3e-06 28.5 0.9 4 25 102 123 99 124 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZFP90-205 - 224 1.6e-47 157.9 42.2 6 9 2.6e-12 1.3e-09 38.0 0.2 1 25 127 151 127 152 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZFP90-205 - 224 1.6e-47 157.9 42.2 7 9 1e-10 5.4e-08 32.9 0.4 2 25 156 179 155 180 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZFP90-205 - 224 1.6e-47 157.9 42.2 8 9 4e-10 2e-07 31.1 1.6 2 25 184 207 183 208 0.90 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZFP90-205 - 224 1.6e-47 157.9 42.2 9 9 0.035 18 6.0 0.4 1 12 211 222 211 224 0.85 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZFP90-205 - 224 4e-36 121.5 46.1 1 7 4.8e-06 0.0024 18.2 2.5 1 23 38 60 38 60 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZFP90-205 - 224 4e-36 121.5 46.1 2 7 2.3 1.2e+03 0.3 0.0 5 13 67 75 65 76 0.86 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZFP90-205 - 224 4e-36 121.5 46.1 3 7 5.6e-08 2.9e-05 24.3 2.0 1 23 85 107 85 107 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZFP90-205 - 224 4e-36 121.5 46.1 4 7 4e-09 2e-06 27.9 0.4 1 23 113 135 113 135 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZFP90-205 - 224 4e-36 121.5 46.1 5 7 1.1e-07 5.8e-05 23.3 0.2 1 23 141 163 141 163 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZFP90-205 - 224 4e-36 121.5 46.1 6 7 4e-08 2.1e-05 24.7 1.8 1 23 169 191 169 191 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZFP90-205 - 224 4e-36 121.5 46.1 7 7 6.5e-10 3.3e-07 30.4 1.3 1 23 197 219 197 219 0.98 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZFP90-205 - 224 8.3e-22 76.0 38.7 1 6 0.0011 0.59 11.1 1.1 1 23 38 60 38 61 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZFP90-205 - 224 8.3e-22 76.0 38.7 2 6 4.9e-05 0.025 15.4 1.5 1 23 85 107 85 108 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZFP90-205 - 224 8.3e-22 76.0 38.7 3 6 2.5e-06 0.0013 19.4 0.4 1 23 113 135 113 136 0.97 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZFP90-205 - 224 8.3e-22 76.0 38.7 4 6 3.4e-06 0.0018 19.0 0.2 1 23 141 163 141 164 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZFP90-205 - 224 8.3e-22 76.0 38.7 5 6 3.3e-05 0.017 15.9 1.0 1 23 169 191 169 192 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZFP90-205 - 224 8.3e-22 76.0 38.7 6 6 1.9e-06 0.00098 19.8 1.0 1 23 197 219 197 220 0.95 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZFP90-205 - 224 8.8e-11 41.5 36.6 1 6 0.71 3.7e+02 1.3 0.5 2 16 38 52 37 63 0.75 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZFP90-205 - 224 8.8e-11 41.5 36.6 2 6 0.00047 0.24 11.4 1.2 2 22 85 105 85 109 0.85 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZFP90-205 - 224 8.8e-11 41.5 36.6 3 6 1.2e-05 0.0064 16.5 0.7 2 24 113 135 113 138 0.95 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZFP90-205 - 224 8.8e-11 41.5 36.6 4 6 0.004 2 8.5 0.3 2 24 141 163 141 166 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZFP90-205 - 224 8.8e-11 41.5 36.6 5 6 0.00022 0.11 12.5 0.7 2 22 169 189 169 193 0.87 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZFP90-205 - 224 8.8e-11 41.5 36.6 6 6 5.5e-05 0.028 14.4 1.5 2 24 197 219 197 221 0.90 C2H2-type zinc finger Zn-ribbon_8 PF09723.10 40 ZFP90-205 - 224 1.6e-09 37.7 32.2 1 6 0.00059 0.3 11.2 2.4 6 22 38 60 37 76 0.69 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZFP90-205 - 224 1.6e-09 37.7 32.2 2 6 0.015 7.7 6.7 1.1 11 38 68 96 66 98 0.54 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZFP90-205 - 224 1.6e-09 37.7 32.2 3 6 6.6e-05 0.034 14.3 4.4 6 38 85 124 84 126 0.88 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZFP90-205 - 224 1.6e-09 37.7 32.2 4 6 0.00086 0.44 10.7 0.6 6 23 113 130 112 136 0.81 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZFP90-205 - 224 1.6e-09 37.7 32.2 5 6 0.00024 0.12 12.5 4.3 6 38 141 180 140 181 0.76 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZFP90-205 - 224 1.6e-09 37.7 32.2 6 6 8.2e-06 0.0042 17.2 4.5 6 38 169 208 167 210 0.92 Zinc ribbon domain zf-C2H2_11 PF16622.5 29 ZFP90-205 - 224 4.1e-09 36.0 18.2 1 6 0.082 42 4.0 0.0 4 15 37 48 34 59 0.86 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZFP90-205 - 224 4.1e-09 36.0 18.2 2 6 0.08 41 4.0 0.2 5 24 85 104 82 107 0.75 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZFP90-205 - 224 4.1e-09 36.0 18.2 3 6 0.003 1.5 8.6 0.1 6 23 114 131 111 134 0.91 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZFP90-205 - 224 4.1e-09 36.0 18.2 4 6 0.0026 1.3 8.8 0.1 6 23 142 159 139 162 0.91 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZFP90-205 - 224 4.1e-09 36.0 18.2 5 6 0.029 15 5.4 0.1 6 26 170 190 167 191 0.80 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZFP90-205 - 224 4.1e-09 36.0 18.2 6 6 7.9e-05 0.041 13.7 0.5 7 26 199 218 196 219 0.94 zinc-finger C2H2-type zf-C2H2_jaz PF12171.8 27 ZFP90-205 - 224 5.3e-09 36.1 27.8 1 6 4.7 2.4e+03 -1.0 1.1 4 22 40 58 37 58 0.84 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZFP90-205 - 224 5.3e-09 36.1 27.8 2 6 0.0092 4.7 7.6 0.4 4 20 87 103 84 104 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZFP90-205 - 224 5.3e-09 36.1 27.8 3 6 0.0018 0.93 9.9 0.1 2 24 113 135 112 135 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZFP90-205 - 224 5.3e-09 36.1 27.8 4 6 0.00018 0.09 13.1 0.1 2 24 141 163 140 163 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZFP90-205 - 224 5.3e-09 36.1 27.8 5 6 0.013 6.8 7.1 0.3 2 22 169 189 168 189 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZFP90-205 - 224 5.3e-09 36.1 27.8 6 6 1.8e-05 0.0095 16.2 0.1 2 22 197 217 196 217 0.93 Zinc-finger double-stranded RNA-binding # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFP90-205.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFP90-205.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFP90-205.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFP90-205.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFP90-205.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:59:02 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFP90-206.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFP90-206.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFP90-206.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFP90-206.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFP90-206.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:59:02 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFP90-207.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFP90-207.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFP90-207.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFP90-207.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFP90-207.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:59:02 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- KRAB PF01352.27 42 ZFP90-208 - 60 3.7e-27 93.7 0.3 1 1 2.4e-31 4.2e-27 93.5 0.3 1 42 13 54 13 54 0.99 KRAB box # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFP90-208.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFP90-208.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFP90-208.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFP90-208.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFP90-208.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:59:03 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZFP90-209 - 636 9.5e-92 297.7 100.6 1 16 4.2e-05 0.037 14.5 2.5 11 26 207 222 206 222 0.90 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZFP90-209 - 636 9.5e-92 297.7 100.6 2 16 0.00053 0.48 11.0 6.7 1 24 225 263 225 264 0.67 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZFP90-209 - 636 9.5e-92 297.7 100.6 3 16 3.2e-11 2.9e-08 33.8 0.8 2 26 269 293 268 293 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZFP90-209 - 636 9.5e-92 297.7 100.6 4 16 6.9e-09 6.2e-06 26.4 0.2 7 24 302 319 297 321 0.89 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZFP90-209 - 636 9.5e-92 297.7 100.6 5 16 1.2e-10 1.1e-07 32.0 0.8 1 26 324 349 324 349 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZFP90-209 - 636 9.5e-92 297.7 100.6 6 16 1.1e-09 9.8e-07 28.9 0.5 1 25 352 376 352 377 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZFP90-209 - 636 9.5e-92 297.7 100.6 7 16 3.3e-11 3e-08 33.7 0.1 1 25 380 404 380 405 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZFP90-209 - 636 9.5e-92 297.7 100.6 8 16 0.0011 1 9.9 0.3 1 21 408 428 408 433 0.80 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZFP90-209 - 636 9.5e-92 297.7 100.6 9 16 0.13 1.1e+02 3.4 0.2 12 26 447 461 443 461 0.86 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZFP90-209 - 636 9.5e-92 297.7 100.6 10 16 0.00033 0.3 11.6 0.0 2 18 465 481 464 483 0.89 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZFP90-209 - 636 9.5e-92 297.7 100.6 11 16 1.7e-08 1.5e-05 25.2 0.3 8 26 490 508 488 508 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZFP90-209 - 636 9.5e-92 297.7 100.6 12 16 5.4e-09 4.9e-06 26.7 0.9 4 25 514 535 511 536 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZFP90-209 - 636 9.5e-92 297.7 100.6 13 16 5.7e-12 5.1e-09 36.2 0.2 1 25 539 563 539 564 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZFP90-209 - 636 9.5e-92 297.7 100.6 14 16 2.2e-10 2e-07 31.1 0.4 2 25 568 591 567 592 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZFP90-209 - 636 9.5e-92 297.7 100.6 15 16 8.5e-10 7.6e-07 29.3 1.6 3 25 597 619 595 620 0.90 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZFP90-209 - 636 9.5e-92 297.7 100.6 16 16 0.067 60 4.3 0.4 1 11 623 633 623 636 0.85 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZFP90-209 - 636 1.1e-64 211.4 106.6 1 15 9.2 8.2e+03 -2.3 0.1 12 20 130 138 129 138 0.85 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZFP90-209 - 636 1.1e-64 211.4 106.6 2 15 1.3e-06 0.0012 19.2 4.5 1 23 211 233 211 233 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZFP90-209 - 636 1.1e-64 211.4 106.6 3 15 0.00017 0.15 12.6 1.2 1 23 254 276 254 276 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZFP90-209 - 636 1.1e-64 211.4 106.6 4 15 2e-06 0.0018 18.6 0.5 1 23 282 304 282 304 0.94 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZFP90-209 - 636 1.1e-64 211.4 106.6 5 15 1.4e-08 1.3e-05 25.4 0.6 1 23 310 332 310 332 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZFP90-209 - 636 1.1e-64 211.4 106.6 6 15 1.1e-05 0.01 16.3 2.2 1 23 338 360 338 360 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZFP90-209 - 636 1.1e-64 211.4 106.6 7 15 1.4e-08 1.2e-05 25.4 2.5 1 23 366 388 366 388 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZFP90-209 - 636 1.1e-64 211.4 106.6 8 15 1.5e-07 0.00014 22.1 0.2 1 23 394 416 394 416 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZFP90-209 - 636 1.1e-64 211.4 106.6 9 15 1e-05 0.009 16.4 2.5 1 23 450 472 450 472 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZFP90-209 - 636 1.1e-64 211.4 106.6 10 15 4.3 3.8e+03 -1.3 0.0 5 13 479 487 477 488 0.86 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZFP90-209 - 636 1.1e-64 211.4 106.6 11 15 1.2e-07 0.00011 22.5 2.0 1 23 497 519 497 519 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZFP90-209 - 636 1.1e-64 211.4 106.6 12 15 8.4e-09 7.6e-06 26.1 0.4 1 23 525 547 525 547 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZFP90-209 - 636 1.1e-64 211.4 106.6 13 15 2.4e-07 0.00021 21.5 0.2 1 23 553 575 553 575 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZFP90-209 - 636 1.1e-64 211.4 106.6 14 15 8.5e-08 7.6e-05 22.9 1.8 1 23 581 603 581 603 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZFP90-209 - 636 1.1e-64 211.4 106.6 15 15 1.4e-09 1.2e-06 28.6 1.3 1 23 609 631 609 631 0.98 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZFP90-209 - 636 1.4e-38 128.2 98.1 1 13 0.00059 0.53 11.3 3.7 1 23 211 233 211 234 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZFP90-209 - 636 1.4e-38 128.2 98.1 2 13 0.0046 4.1 8.5 1.0 1 23 254 276 254 277 0.84 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZFP90-209 - 636 1.4e-38 128.2 98.1 3 13 7.8e-05 0.07 14.0 0.6 1 23 282 304 282 305 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZFP90-209 - 636 1.4e-38 128.2 98.1 4 13 8.7e-06 0.0078 17.0 0.7 1 23 310 332 310 333 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZFP90-209 - 636 1.4e-38 128.2 98.1 5 13 0.00017 0.15 13.0 1.5 1 23 338 360 338 361 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZFP90-209 - 636 1.4e-38 128.2 98.1 6 13 1.9e-06 0.0017 19.1 2.8 1 23 366 388 366 389 0.97 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZFP90-209 - 636 1.4e-38 128.2 98.1 7 13 2.3e-06 0.0021 18.8 0.3 1 23 394 416 394 417 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZFP90-209 - 636 1.4e-38 128.2 98.1 8 13 0.0025 2.2 9.3 1.1 1 23 450 472 450 473 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZFP90-209 - 636 1.4e-38 128.2 98.1 9 13 0.00011 0.094 13.6 1.5 1 23 497 519 497 520 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZFP90-209 - 636 1.4e-38 128.2 98.1 10 13 5.4e-06 0.0048 17.6 0.4 1 23 525 547 525 548 0.97 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZFP90-209 - 636 1.4e-38 128.2 98.1 11 13 7.4e-06 0.0066 17.2 0.2 1 23 553 575 553 576 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZFP90-209 - 636 1.4e-38 128.2 98.1 12 13 7.1e-05 0.064 14.1 1.0 1 23 581 603 581 604 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZFP90-209 - 636 1.4e-38 128.2 98.1 13 13 4.1e-06 0.0037 18.0 1.0 1 23 609 631 609 632 0.95 C2H2-type zinc finger KRAB PF01352.27 42 ZFP90-209 - 636 1.4e-25 88.6 0.3 1 1 3.7e-28 3.4e-25 87.4 0.3 1 42 13 54 13 54 0.99 KRAB box zf-C2H2_6 PF13912.6 27 ZFP90-209 - 636 4.8e-19 67.9 96.8 1 13 0.014 13 6.0 4.1 2 26 211 235 211 236 0.95 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZFP90-209 - 636 4.8e-19 67.9 96.8 2 13 0.0028 2.5 8.2 0.4 1 11 253 263 253 276 0.90 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZFP90-209 - 636 4.8e-19 67.9 96.8 3 13 0.00023 0.2 11.7 1.4 2 21 282 301 282 306 0.88 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZFP90-209 - 636 4.8e-19 67.9 96.8 4 13 0.0016 1.5 8.9 0.7 2 21 310 329 310 334 0.83 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZFP90-209 - 636 4.8e-19 67.9 96.8 5 13 3.2e-05 0.029 14.4 1.6 2 24 338 360 338 363 0.91 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZFP90-209 - 636 4.8e-19 67.9 96.8 6 13 0.00021 0.19 11.8 3.3 2 24 366 388 366 391 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZFP90-209 - 636 4.8e-19 67.9 96.8 7 13 9.4e-05 0.085 12.9 0.3 2 25 394 417 394 419 0.92 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZFP90-209 - 636 4.8e-19 67.9 96.8 8 13 1.6 1.4e+03 -0.6 0.5 2 15 450 463 449 474 0.77 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZFP90-209 - 636 4.8e-19 67.9 96.8 9 13 0.00097 0.87 9.7 1.1 2 22 497 517 497 521 0.85 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZFP90-209 - 636 4.8e-19 67.9 96.8 10 13 2.6e-05 0.024 14.7 0.7 2 24 525 547 525 550 0.95 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZFP90-209 - 636 4.8e-19 67.9 96.8 11 13 0.0084 7.5 6.7 0.3 2 24 553 575 553 578 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZFP90-209 - 636 4.8e-19 67.9 96.8 12 13 0.00044 0.4 10.7 0.7 2 22 581 601 581 605 0.87 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZFP90-209 - 636 4.8e-19 67.9 96.8 13 13 0.00011 0.1 12.6 1.5 2 24 609 631 609 633 0.90 C2H2-type zinc finger zf-C2H2_jaz PF12171.8 27 ZFP90-209 - 636 6.5e-17 61.3 61.2 1 12 0.0011 1 9.7 3.1 2 25 211 234 210 234 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZFP90-209 - 636 6.5e-17 61.3 61.2 2 12 0.1 91 3.5 0.5 2 21 254 273 253 274 0.86 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZFP90-209 - 636 6.5e-17 61.3 61.2 3 12 0.00049 0.44 10.9 0.0 2 22 282 302 281 302 0.95 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZFP90-209 - 636 6.5e-17 61.3 61.2 4 12 0.00049 0.44 10.9 0.0 4 22 312 330 309 330 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZFP90-209 - 636 6.5e-17 61.3 61.2 5 12 0.0076 6.8 7.1 0.0 2 24 338 360 337 361 0.90 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZFP90-209 - 636 6.5e-17 61.3 61.2 6 12 0.0019 1.7 9.0 1.1 2 24 366 388 365 388 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZFP90-209 - 636 6.5e-17 61.3 61.2 7 12 0.53 4.7e+02 1.2 0.0 2 11 394 403 393 405 0.88 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZFP90-209 - 636 6.5e-17 61.3 61.2 8 12 0.016 14 6.1 0.2 4 20 499 515 496 515 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZFP90-209 - 636 6.5e-17 61.3 61.2 9 12 0.0038 3.4 8.1 0.1 2 24 525 547 524 547 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZFP90-209 - 636 6.5e-17 61.3 61.2 10 12 0.00037 0.33 11.3 0.1 2 24 553 575 552 575 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZFP90-209 - 636 6.5e-17 61.3 61.2 11 12 0.027 24 5.3 0.3 2 22 581 601 580 601 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZFP90-209 - 636 6.5e-17 61.3 61.2 12 12 3.8e-05 0.034 14.4 0.1 2 22 609 629 608 629 0.93 Zinc-finger double-stranded RNA-binding Zn-ribbon_8 PF09723.10 40 ZFP90-209 - 636 1.3e-10 41.2 67.2 1 10 0.052 46 4.2 0.2 6 22 211 227 210 233 0.77 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZFP90-209 - 636 1.3e-10 41.2 67.2 2 10 0.00048 0.43 10.7 1.2 7 36 255 291 253 297 0.90 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZFP90-209 - 636 1.3e-10 41.2 67.2 3 10 0.00042 0.37 10.9 1.3 6 35 310 346 309 349 0.90 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZFP90-209 - 636 1.3e-10 41.2 67.2 4 10 0.002 1.8 8.7 5.5 6 38 338 377 337 378 0.75 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZFP90-209 - 636 1.3e-10 41.2 67.2 5 10 0.087 78 3.5 6.1 6 34 366 401 365 405 0.70 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZFP90-209 - 636 1.3e-10 41.2 67.2 6 10 0.001 0.9 9.7 2.0 6 21 450 471 449 487 0.69 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZFP90-209 - 636 1.3e-10 41.2 67.2 7 10 0.00014 0.13 12.4 4.3 6 38 497 536 496 538 0.88 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZFP90-209 - 636 1.3e-10 41.2 67.2 8 10 0.0018 1.6 8.9 0.6 6 23 525 542 524 548 0.81 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZFP90-209 - 636 1.3e-10 41.2 67.2 9 10 0.00048 0.43 10.7 4.0 6 38 553 592 552 593 0.76 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZFP90-209 - 636 1.3e-10 41.2 67.2 10 10 1.4e-05 0.013 15.6 4.0 6 38 581 620 580 622 0.92 Zinc ribbon domain zf-C2H2_11 PF16622.5 29 ZFP90-209 - 636 7.1e-09 35.3 65.5 1 13 0.63 5.6e+02 0.4 0.9 5 23 211 229 209 234 0.89 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZFP90-209 - 636 7.1e-09 35.3 65.5 2 13 0.23 2.1e+02 1.8 0.3 6 26 255 275 253 276 0.74 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZFP90-209 - 636 7.1e-09 35.3 65.5 3 13 0.97 8.7e+02 -0.2 0.2 7 23 284 300 281 301 0.85 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZFP90-209 - 636 7.1e-09 35.3 65.5 4 13 0.0017 1.5 8.6 1.2 5 26 310 331 307 332 0.93 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZFP90-209 - 636 7.1e-09 35.3 65.5 5 13 0.0061 5.4 6.9 0.3 5 23 338 356 335 359 0.90 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZFP90-209 - 636 7.1e-09 35.3 65.5 6 13 0.0018 1.6 8.5 0.8 5 23 366 384 363 387 0.90 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZFP90-209 - 636 7.1e-09 35.3 65.5 7 13 2.4e-05 0.022 14.5 0.5 7 26 396 415 392 417 0.91 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZFP90-209 - 636 7.1e-09 35.3 65.5 8 13 0.16 1.5e+02 2.3 0.0 4 15 449 460 446 471 0.86 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZFP90-209 - 636 7.1e-09 35.3 65.5 9 13 0.16 1.5e+02 2.3 0.2 5 23 497 515 494 519 0.74 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZFP90-209 - 636 7.1e-09 35.3 65.5 10 13 0.0061 5.4 6.9 0.1 6 23 526 543 523 546 0.91 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZFP90-209 - 636 7.1e-09 35.3 65.5 11 13 0.0053 4.7 7.0 0.1 6 23 554 571 551 574 0.91 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZFP90-209 - 636 7.1e-09 35.3 65.5 12 13 0.059 53 3.7 0.1 6 26 582 602 579 603 0.79 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZFP90-209 - 636 7.1e-09 35.3 65.5 13 13 0.00016 0.15 11.9 0.5 7 26 611 630 608 631 0.94 zinc-finger C2H2-type # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFP90-209.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFP90-209.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFP90-209.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFP90-209.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFP90-209.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:59:03 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFP90-210.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFP90-210.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFP90-210.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFP90-210.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFP90-210.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:59:04 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFP90-211.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFP90-211.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFP90-211.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFP90-211.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFP90-211.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:59:04 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZFP90-212 - 224 1.6e-47 157.9 42.2 1 9 0.64 3.3e+02 2.0 0.0 6 21 1 16 1 21 0.76 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZFP90-212 - 224 1.6e-47 157.9 42.2 2 9 0.066 34 5.1 0.2 12 26 35 49 32 49 0.86 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZFP90-212 - 224 1.6e-47 157.9 42.2 3 9 0.00016 0.084 13.3 0.0 2 18 53 69 52 71 0.89 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZFP90-212 - 224 1.6e-47 157.9 42.2 4 9 8.3e-09 4.2e-06 26.9 0.3 8 26 78 96 76 96 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZFP90-212 - 224 1.6e-47 157.9 42.2 5 9 2.6e-09 1.3e-06 28.5 0.9 4 25 102 123 99 124 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZFP90-212 - 224 1.6e-47 157.9 42.2 6 9 2.6e-12 1.3e-09 38.0 0.2 1 25 127 151 127 152 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZFP90-212 - 224 1.6e-47 157.9 42.2 7 9 1e-10 5.4e-08 32.9 0.4 2 25 156 179 155 180 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZFP90-212 - 224 1.6e-47 157.9 42.2 8 9 4e-10 2e-07 31.1 1.6 2 25 184 207 183 208 0.90 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZFP90-212 - 224 1.6e-47 157.9 42.2 9 9 0.035 18 6.0 0.4 1 12 211 222 211 224 0.85 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZFP90-212 - 224 4e-36 121.5 46.1 1 7 4.8e-06 0.0024 18.2 2.5 1 23 38 60 38 60 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZFP90-212 - 224 4e-36 121.5 46.1 2 7 2.3 1.2e+03 0.3 0.0 5 13 67 75 65 76 0.86 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZFP90-212 - 224 4e-36 121.5 46.1 3 7 5.6e-08 2.9e-05 24.3 2.0 1 23 85 107 85 107 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZFP90-212 - 224 4e-36 121.5 46.1 4 7 4e-09 2e-06 27.9 0.4 1 23 113 135 113 135 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZFP90-212 - 224 4e-36 121.5 46.1 5 7 1.1e-07 5.8e-05 23.3 0.2 1 23 141 163 141 163 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZFP90-212 - 224 4e-36 121.5 46.1 6 7 4e-08 2.1e-05 24.7 1.8 1 23 169 191 169 191 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZFP90-212 - 224 4e-36 121.5 46.1 7 7 6.5e-10 3.3e-07 30.4 1.3 1 23 197 219 197 219 0.98 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZFP90-212 - 224 8.3e-22 76.0 38.7 1 6 0.0011 0.59 11.1 1.1 1 23 38 60 38 61 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZFP90-212 - 224 8.3e-22 76.0 38.7 2 6 4.9e-05 0.025 15.4 1.5 1 23 85 107 85 108 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZFP90-212 - 224 8.3e-22 76.0 38.7 3 6 2.5e-06 0.0013 19.4 0.4 1 23 113 135 113 136 0.97 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZFP90-212 - 224 8.3e-22 76.0 38.7 4 6 3.4e-06 0.0018 19.0 0.2 1 23 141 163 141 164 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZFP90-212 - 224 8.3e-22 76.0 38.7 5 6 3.3e-05 0.017 15.9 1.0 1 23 169 191 169 192 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZFP90-212 - 224 8.3e-22 76.0 38.7 6 6 1.9e-06 0.00098 19.8 1.0 1 23 197 219 197 220 0.95 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZFP90-212 - 224 8.8e-11 41.5 36.6 1 6 0.71 3.7e+02 1.3 0.5 2 16 38 52 37 63 0.75 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZFP90-212 - 224 8.8e-11 41.5 36.6 2 6 0.00047 0.24 11.4 1.2 2 22 85 105 85 109 0.85 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZFP90-212 - 224 8.8e-11 41.5 36.6 3 6 1.2e-05 0.0064 16.5 0.7 2 24 113 135 113 138 0.95 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZFP90-212 - 224 8.8e-11 41.5 36.6 4 6 0.004 2 8.5 0.3 2 24 141 163 141 166 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZFP90-212 - 224 8.8e-11 41.5 36.6 5 6 0.00022 0.11 12.5 0.7 2 22 169 189 169 193 0.87 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZFP90-212 - 224 8.8e-11 41.5 36.6 6 6 5.5e-05 0.028 14.4 1.5 2 24 197 219 197 221 0.90 C2H2-type zinc finger Zn-ribbon_8 PF09723.10 40 ZFP90-212 - 224 1.6e-09 37.7 32.2 1 6 0.00059 0.3 11.2 2.4 6 22 38 60 37 76 0.69 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZFP90-212 - 224 1.6e-09 37.7 32.2 2 6 0.015 7.7 6.7 1.1 11 38 68 96 66 98 0.54 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZFP90-212 - 224 1.6e-09 37.7 32.2 3 6 6.6e-05 0.034 14.3 4.4 6 38 85 124 84 126 0.88 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZFP90-212 - 224 1.6e-09 37.7 32.2 4 6 0.00086 0.44 10.7 0.6 6 23 113 130 112 136 0.81 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZFP90-212 - 224 1.6e-09 37.7 32.2 5 6 0.00024 0.12 12.5 4.3 6 38 141 180 140 181 0.76 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZFP90-212 - 224 1.6e-09 37.7 32.2 6 6 8.2e-06 0.0042 17.2 4.5 6 38 169 208 167 210 0.92 Zinc ribbon domain zf-C2H2_11 PF16622.5 29 ZFP90-212 - 224 4.1e-09 36.0 18.2 1 6 0.082 42 4.0 0.0 4 15 37 48 34 59 0.86 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZFP90-212 - 224 4.1e-09 36.0 18.2 2 6 0.08 41 4.0 0.2 5 24 85 104 82 107 0.75 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZFP90-212 - 224 4.1e-09 36.0 18.2 3 6 0.003 1.5 8.6 0.1 6 23 114 131 111 134 0.91 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZFP90-212 - 224 4.1e-09 36.0 18.2 4 6 0.0026 1.3 8.8 0.1 6 23 142 159 139 162 0.91 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZFP90-212 - 224 4.1e-09 36.0 18.2 5 6 0.029 15 5.4 0.1 6 26 170 190 167 191 0.80 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZFP90-212 - 224 4.1e-09 36.0 18.2 6 6 7.9e-05 0.041 13.7 0.5 7 26 199 218 196 219 0.94 zinc-finger C2H2-type zf-C2H2_jaz PF12171.8 27 ZFP90-212 - 224 5.3e-09 36.1 27.8 1 6 4.7 2.4e+03 -1.0 1.1 4 22 40 58 37 58 0.84 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZFP90-212 - 224 5.3e-09 36.1 27.8 2 6 0.0092 4.7 7.6 0.4 4 20 87 103 84 104 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZFP90-212 - 224 5.3e-09 36.1 27.8 3 6 0.0018 0.93 9.9 0.1 2 24 113 135 112 135 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZFP90-212 - 224 5.3e-09 36.1 27.8 4 6 0.00018 0.09 13.1 0.1 2 24 141 163 140 163 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZFP90-212 - 224 5.3e-09 36.1 27.8 5 6 0.013 6.8 7.1 0.3 2 22 169 189 168 189 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZFP90-212 - 224 5.3e-09 36.1 27.8 6 6 1.8e-05 0.0095 16.2 0.1 2 22 197 217 196 217 0.93 Zinc-finger double-stranded RNA-binding # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFP90-212.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFP90-212.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFP90-212.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFP90-212.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFP90-212.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:59:05 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- KRAB PF01352.27 42 ZFP90-213 - 60 3.7e-27 93.7 0.3 1 1 2.4e-31 4.2e-27 93.5 0.3 1 42 13 54 13 54 0.99 KRAB box # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFP90-213.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFP90-213.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFP90-213.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFP90-213.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFP90-213.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:59:05 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFP90-214.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFP90-214.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFP90-214.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFP90-214.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFP90-214.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:59:05 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFP90-216.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFP90-216.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFP90-216.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFP90-216.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFP90-216.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:59:06 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFP90-217.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFP90-217.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFP90-217.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFP90-217.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFP90-217.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:59:06 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- KRAB PF01352.27 42 ZFP90-218 - 60 3.7e-27 93.7 0.3 1 1 2.4e-31 4.2e-27 93.5 0.3 1 42 13 54 13 54 0.99 KRAB box # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFP90-218.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFP90-218.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFP90-218.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFP90-218.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFP90-218.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:59:06 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- KRAB PF01352.27 42 ZFP90-219 - 113 1.5e-26 91.8 0.3 1 1 1.2e-30 2.2e-26 91.2 0.3 1 42 13 54 13 54 0.99 KRAB box # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFP90-219.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFP90-219.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFP90-219.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFP90-219.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFP90-219.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:59:07 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-C2H2 PF00096.26 23 ZFP91-201 - 570 9.5e-16 57.3 30.7 1 5 0.0007 0.74 10.4 0.2 2 23 312 336 311 336 0.94 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZFP91-201 - 570 9.5e-16 57.3 30.7 2 5 0.0012 1.2 9.7 2.8 1 23 342 366 342 366 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZFP91-201 - 570 9.5e-16 57.3 30.7 3 5 7.3e-07 0.00077 19.8 0.8 1 23 372 394 372 394 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZFP91-201 - 570 9.5e-16 57.3 30.7 4 5 8.7e-07 0.00092 19.5 1.6 2 23 401 422 400 422 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZFP91-201 - 570 9.5e-16 57.3 30.7 5 5 1e-05 0.011 16.2 0.4 1 23 430 453 430 453 0.96 Zinc finger, C2H2 type zf-H2C2_2 PF13465.6 26 ZFP91-201 - 570 1.1e-13 50.9 21.8 1 4 0.0096 10 6.8 2.3 2 24 328 353 327 354 0.85 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZFP91-201 - 570 1.1e-13 50.9 21.8 2 4 7e-07 0.00074 19.8 0.7 2 26 359 383 358 383 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZFP91-201 - 570 1.1e-13 50.9 21.8 3 4 5e-07 0.00053 20.3 0.3 1 23 386 408 386 411 0.89 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZFP91-201 - 570 1.1e-13 50.9 21.8 4 4 7.7e-06 0.0081 16.5 0.5 1 25 414 440 414 441 0.89 Zinc-finger double domain zf-C2H2_4 PF13894.6 24 ZFP91-201 - 570 5.2e-08 33.1 33.8 1 5 0.077 81 4.5 0.2 2 24 312 336 311 336 0.89 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZFP91-201 - 570 5.2e-08 33.1 33.8 2 5 0.00017 0.18 12.7 2.7 1 23 342 366 342 367 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZFP91-201 - 570 5.2e-08 33.1 33.8 3 5 5e-05 0.053 14.4 0.7 1 23 372 394 372 395 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZFP91-201 - 570 5.2e-08 33.1 33.8 4 5 0.0022 2.3 9.3 1.4 2 23 401 422 400 423 0.74 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZFP91-201 - 570 5.2e-08 33.1 33.8 5 5 9.9e-05 0.1 13.5 0.6 1 24 430 453 430 453 0.94 C2H2-type zinc finger # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFP91-201.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFP91-201.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFP91-201.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFP91-201.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFP91-201.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:59:07 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- Zfx_Zfy_act PF04704.13 330 ZFX-201 - 805 1.1e-151 504.6 17.6 1 2 2.2 3.5e+03 -3.2 0.6 25 60 41 53 23 69 0.42 Zfx / Zfy transcription activation region Zfx_Zfy_act PF04704.13 330 ZFX-201 - 805 1.1e-151 504.6 17.6 2 2 6.6e-155 1.1e-151 504.6 17.6 1 330 70 410 70 410 0.99 Zfx / Zfy transcription activation region zf-C2H2 PF00096.26 23 ZFX-201 - 805 1.7e-42 141.5 113.5 1 13 4.1e-08 6.7e-05 23.1 2.0 1 23 425 447 425 447 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZFX-201 - 805 1.7e-42 141.5 113.5 2 13 9.6e-05 0.16 12.5 2.8 1 23 456 478 456 478 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZFX-201 - 805 1.7e-42 141.5 113.5 3 13 8.5e-06 0.014 15.8 1.0 2 23 489 510 488 510 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZFX-201 - 805 1.7e-42 141.5 113.5 4 13 0.002 3.3 8.4 0.4 1 23 519 542 519 542 0.93 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZFX-201 - 805 1.7e-42 141.5 113.5 5 13 6.2e-09 1e-05 25.7 2.1 1 23 548 570 548 570 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZFX-201 - 805 1.7e-42 141.5 113.5 6 13 3.5e-06 0.0056 17.1 1.6 1 23 576 599 576 599 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZFX-201 - 805 1.7e-42 141.5 113.5 7 13 0.00062 1 10.0 0.2 1 23 605 627 605 627 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZFX-201 - 805 1.7e-42 141.5 113.5 8 13 8.8e-05 0.14 12.6 4.9 1 23 633 656 633 656 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZFX-201 - 805 1.7e-42 141.5 113.5 9 13 1.1e-06 0.0017 18.7 2.1 1 23 662 684 662 684 0.94 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZFX-201 - 805 1.7e-42 141.5 113.5 10 13 0.003 4.9 7.8 1.7 1 23 690 713 690 713 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZFX-201 - 805 1.7e-42 141.5 113.5 11 13 2.7e-08 4.5e-05 23.7 4.2 1 23 719 741 719 741 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZFX-201 - 805 1.7e-42 141.5 113.5 12 13 6.2e-06 0.01 16.3 0.3 1 23 747 770 747 770 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZFX-201 - 805 1.7e-42 141.5 113.5 13 13 5.9e-06 0.0097 16.3 5.5 1 23 776 798 776 799 0.95 Zinc finger, C2H2 type zf-H2C2_2 PF13465.6 26 ZFX-201 - 805 5.7e-38 127.7 120.3 1 13 0.0019 3.1 8.4 0.2 13 26 423 436 418 436 0.85 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZFX-201 - 805 5.7e-38 127.7 120.3 2 13 6.5e-06 0.011 16.2 4.7 2 25 440 466 439 467 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZFX-201 - 805 5.7e-38 127.7 120.3 3 13 0.00054 0.89 10.1 1.8 1 26 474 499 473 499 0.86 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZFX-201 - 805 5.7e-38 127.7 120.3 4 13 0.0077 13 6.5 2.3 4 24 505 528 502 529 0.70 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZFX-201 - 805 5.7e-38 127.7 120.3 5 13 0.00012 0.19 12.2 1.1 2 26 534 559 534 559 0.90 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZFX-201 - 805 5.7e-38 127.7 120.3 6 13 1.7e-11 2.7e-08 33.9 1.2 2 23 563 584 562 586 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZFX-201 - 805 5.7e-38 127.7 120.3 7 13 2.7e-06 0.0043 17.4 0.7 1 24 590 614 590 616 0.90 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZFX-201 - 805 5.7e-38 127.7 120.3 8 13 0.076 1.2e+02 3.3 1.7 4 25 622 643 619 644 0.81 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZFX-201 - 805 5.7e-38 127.7 120.3 9 13 1.4e-07 0.00022 21.5 2.1 1 24 647 671 647 673 0.90 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZFX-201 - 805 5.7e-38 127.7 120.3 10 13 7.5e-05 0.12 12.8 3.0 2 23 677 698 676 700 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZFX-201 - 805 5.7e-38 127.7 120.3 11 13 9e-07 0.0015 18.9 0.6 2 25 705 729 704 730 0.90 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZFX-201 - 805 5.7e-38 127.7 120.3 12 13 1.4e-08 2.2e-05 24.6 1.6 2 25 734 757 733 758 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZFX-201 - 805 5.7e-38 127.7 120.3 13 13 2.8e-06 0.0045 17.3 3.4 2 25 762 786 761 787 0.88 Zinc-finger double domain zf-C2H2_4 PF13894.6 24 ZFX-201 - 805 5.5e-31 104.6 108.9 1 13 1e-07 0.00016 22.2 0.9 1 23 425 447 425 448 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZFX-201 - 805 5.5e-31 104.6 108.9 2 13 0.0012 1.9 9.5 1.6 1 23 456 478 456 479 0.91 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZFX-201 - 805 5.5e-31 104.6 108.9 3 13 0.0012 1.9 9.6 1.3 2 23 489 510 488 511 0.88 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZFX-201 - 805 5.5e-31 104.6 108.9 4 13 0.00031 0.5 11.3 0.6 1 24 519 542 519 542 0.89 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZFX-201 - 805 5.5e-31 104.6 108.9 5 13 2.4e-05 0.039 14.8 1.6 1 23 548 570 548 571 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZFX-201 - 805 5.5e-31 104.6 108.9 6 13 3e-05 0.05 14.5 1.2 1 24 576 599 576 599 0.86 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZFX-201 - 805 5.5e-31 104.6 108.9 7 13 0.00018 0.29 12.1 0.2 1 23 605 627 605 628 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZFX-201 - 805 5.5e-31 104.6 108.9 8 13 0.0035 5.6 8.1 4.7 1 24 633 656 633 656 0.90 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZFX-201 - 805 5.5e-31 104.6 108.9 9 13 6e-06 0.0097 16.7 2.3 1 23 662 684 662 685 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZFX-201 - 805 5.5e-31 104.6 108.9 10 13 0.005 8.2 7.6 2.2 1 24 690 713 690 713 0.86 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZFX-201 - 805 5.5e-31 104.6 108.9 11 13 1.3e-06 0.002 18.8 3.2 1 23 719 741 719 742 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZFX-201 - 805 5.5e-31 104.6 108.9 12 13 0.00018 0.29 12.1 0.3 1 24 747 770 747 770 0.81 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZFX-201 - 805 5.5e-31 104.6 108.9 13 13 7e-05 0.11 13.3 4.5 1 24 776 799 776 799 0.96 C2H2-type zinc finger zf-H2C2_5 PF13909.6 26 ZFX-201 - 805 1.6e-26 91.7 102.8 1 12 0.04 66 3.4 0.3 16 24 440 447 435 448 0.78 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 ZFX-201 - 805 1.6e-26 91.7 102.8 2 12 2.7e-05 0.045 13.5 5.6 1 25 456 479 456 479 0.96 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 ZFX-201 - 805 1.6e-26 91.7 102.8 3 12 1.5e-08 2.5e-05 24.0 0.3 1 26 519 544 519 544 0.96 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 ZFX-201 - 805 1.6e-26 91.7 102.8 4 12 0.00013 0.22 11.3 1.5 12 26 559 572 558 572 0.94 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 ZFX-201 - 805 1.6e-26 91.7 102.8 5 12 2.7e-10 4.4e-07 29.5 5.8 1 26 576 601 576 601 0.98 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 ZFX-201 - 805 1.6e-26 91.7 102.8 6 12 1.7 2.8e+03 -1.8 0.2 1 6 605 610 605 628 0.57 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 ZFX-201 - 805 1.6e-26 91.7 102.8 7 12 3.4e-06 0.0055 16.4 6.5 2 26 634 658 633 658 0.95 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 ZFX-201 - 805 1.6e-26 91.7 102.8 8 12 0.025 41 4.0 3.1 2 26 663 686 662 686 0.85 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 ZFX-201 - 805 1.6e-26 91.7 102.8 9 12 5.9e-07 0.00097 18.8 0.6 1 26 690 715 690 715 0.95 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 ZFX-201 - 805 1.6e-26 91.7 102.8 10 12 0.00072 1.2 9.0 1.0 13 26 731 743 729 743 0.90 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 ZFX-201 - 805 1.6e-26 91.7 102.8 11 12 1.1e-07 0.00018 21.2 0.7 1 26 747 772 747 772 0.97 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 ZFX-201 - 805 1.6e-26 91.7 102.8 12 12 4.3 7e+03 -3.1 2.5 1 6 776 781 776 781 0.91 C2H2-type zinc-finger domain zf-C2H2_jaz PF12171.8 27 ZFX-201 - 805 1e-12 48.0 74.9 1 13 5.4e-05 0.089 13.1 0.2 2 24 425 447 424 448 0.91 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZFX-201 - 805 1e-12 48.0 74.9 2 13 0.003 4.9 7.6 3.5 1 25 455 479 455 479 0.95 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZFX-201 - 805 1e-12 48.0 74.9 3 13 0.011 18 5.8 0.2 3 17 489 503 487 507 0.82 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZFX-201 - 805 1e-12 48.0 74.9 4 13 1.3 2.2e+03 -0.9 0.4 2 20 519 537 518 538 0.73 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZFX-201 - 805 1e-12 48.0 74.9 5 13 2.7e-05 0.045 14.1 0.0 2 22 548 568 547 568 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZFX-201 - 805 1e-12 48.0 74.9 6 13 0.0024 3.8 7.9 1.3 4 24 578 598 575 599 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZFX-201 - 805 1e-12 48.0 74.9 7 13 0.14 2.3e+02 2.2 0.2 2 20 605 623 604 623 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZFX-201 - 805 1e-12 48.0 74.9 8 13 0.053 87 3.6 2.6 4 23 635 654 632 657 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZFX-201 - 805 1e-12 48.0 74.9 9 13 1.8e-05 0.029 14.7 0.1 2 21 662 681 661 682 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZFX-201 - 805 1e-12 48.0 74.9 10 13 1.9 3.2e+03 -1.4 0.2 4 23 692 711 690 712 0.78 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZFX-201 - 805 1e-12 48.0 74.9 11 13 8.8e-05 0.14 12.5 1.1 2 24 719 741 718 742 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZFX-201 - 805 1e-12 48.0 74.9 12 13 0.17 2.8e+02 1.9 0.3 4 22 749 767 746 770 0.88 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZFX-201 - 805 1e-12 48.0 74.9 13 13 0.00034 0.55 10.6 0.2 2 21 776 795 775 795 0.93 Zinc-finger double-stranded RNA-binding zinc_ribbon_15 PF17032.5 86 ZFX-201 - 805 3.7e-08 34.0 47.4 1 7 0.0083 14 6.6 0.4 38 79 425 469 419 471 0.77 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZFX-201 - 805 3.7e-08 34.0 47.4 2 7 0.0016 2.7 8.8 1.8 32 77 482 530 479 533 0.70 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZFX-201 - 805 3.7e-08 34.0 47.4 3 7 0.0068 11 6.8 0.4 31 76 541 586 536 591 0.84 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZFX-201 - 805 3.7e-08 34.0 47.4 4 7 0.002 3.3 8.5 2.2 34 78 601 645 593 648 0.86 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZFX-201 - 805 3.7e-08 34.0 47.4 5 7 3.7e-05 0.061 14.1 1.3 28 77 652 701 650 705 0.92 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZFX-201 - 805 3.7e-08 34.0 47.4 6 7 2.1e-05 0.035 14.9 2.3 28 78 709 759 703 765 0.89 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZFX-201 - 805 3.7e-08 34.0 47.4 7 7 0.11 1.7e+02 3.0 0.1 28 60 766 798 759 802 0.83 zinc-ribbon family # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFX-201.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFX-201.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFX-201.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFX-201.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFX-201.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:59:07 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- Zfx_Zfy_act PF04704.13 330 ZFX-202 - 755 1.4e-114 382.7 33.0 1 3 2.2 3.3e+03 -3.1 0.6 24 60 40 53 23 69 0.42 Zfx / Zfy transcription activation region Zfx_Zfy_act PF04704.13 330 ZFX-202 - 755 1.4e-114 382.7 33.0 2 3 5.1e-54 7.6e-51 173.2 18.5 1 140 70 215 70 216 0.98 Zfx / Zfy transcription activation region Zfx_Zfy_act PF04704.13 330 ZFX-202 - 755 1.4e-114 382.7 33.0 3 3 1.7e-68 2.6e-65 220.7 0.7 192 330 217 360 216 360 0.99 Zfx / Zfy transcription activation region zf-C2H2 PF00096.26 23 ZFX-202 - 755 7.2e-43 142.7 113.5 1 13 4.2e-08 6.3e-05 23.2 2.0 1 23 375 397 375 397 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZFX-202 - 755 7.2e-43 142.7 113.5 2 13 9.7e-05 0.15 12.6 2.8 1 23 406 428 406 428 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZFX-202 - 755 7.2e-43 142.7 113.5 3 13 8.6e-06 0.013 15.9 1.0 2 23 439 460 438 460 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZFX-202 - 755 7.2e-43 142.7 113.5 4 13 0.002 3 8.5 0.4 1 23 469 492 469 492 0.93 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZFX-202 - 755 7.2e-43 142.7 113.5 5 13 6.3e-09 9.5e-06 25.8 2.1 1 23 498 520 498 520 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZFX-202 - 755 7.2e-43 142.7 113.5 6 13 3.5e-06 0.0052 17.2 1.6 1 23 526 549 526 549 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZFX-202 - 755 7.2e-43 142.7 113.5 7 13 0.00063 0.94 10.1 0.2 1 23 555 577 555 577 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZFX-202 - 755 7.2e-43 142.7 113.5 8 13 8.9e-05 0.13 12.7 4.9 1 23 583 606 583 606 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZFX-202 - 755 7.2e-43 142.7 113.5 9 13 1.1e-06 0.0016 18.8 2.1 1 23 612 634 612 634 0.94 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZFX-202 - 755 7.2e-43 142.7 113.5 10 13 0.0031 4.6 7.9 1.7 1 23 640 663 640 663 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZFX-202 - 755 7.2e-43 142.7 113.5 11 13 2.8e-08 4.1e-05 23.8 4.2 1 23 669 691 669 691 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZFX-202 - 755 7.2e-43 142.7 113.5 12 13 6.3e-06 0.0094 16.4 0.3 1 23 697 720 697 720 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZFX-202 - 755 7.2e-43 142.7 113.5 13 13 6e-06 0.009 16.4 5.5 1 23 726 748 726 749 0.95 Zinc finger, C2H2 type zf-H2C2_2 PF13465.6 26 ZFX-202 - 755 2.2e-38 129.0 120.3 1 13 0.0019 2.9 8.5 0.2 13 26 373 386 368 386 0.85 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZFX-202 - 755 2.2e-38 129.0 120.3 2 13 6.6e-06 0.0099 16.3 4.7 2 25 390 416 389 417 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZFX-202 - 755 2.2e-38 129.0 120.3 3 13 0.00055 0.82 10.2 1.8 1 26 424 449 423 449 0.86 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZFX-202 - 755 2.2e-38 129.0 120.3 4 13 0.0078 12 6.6 2.3 4 24 455 478 452 479 0.70 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZFX-202 - 755 2.2e-38 129.0 120.3 5 13 0.00012 0.18 12.3 1.1 2 26 484 509 484 509 0.90 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZFX-202 - 755 2.2e-38 129.0 120.3 6 13 1.7e-11 2.5e-08 34.0 1.2 2 23 513 534 512 536 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZFX-202 - 755 2.2e-38 129.0 120.3 7 13 2.7e-06 0.004 17.5 0.7 1 24 540 564 540 566 0.90 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZFX-202 - 755 2.2e-38 129.0 120.3 8 13 0.077 1.2e+02 3.4 1.7 4 25 572 593 569 594 0.81 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZFX-202 - 755 2.2e-38 129.0 120.3 9 13 1.4e-07 0.00021 21.6 2.1 1 24 597 621 597 623 0.90 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZFX-202 - 755 2.2e-38 129.0 120.3 10 13 7.6e-05 0.11 12.9 3.0 2 23 627 648 626 650 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZFX-202 - 755 2.2e-38 129.0 120.3 11 13 9.1e-07 0.0014 19.0 0.6 2 25 655 679 654 680 0.90 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZFX-202 - 755 2.2e-38 129.0 120.3 12 13 1.4e-08 2.1e-05 24.7 1.6 2 25 684 707 683 708 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZFX-202 - 755 2.2e-38 129.0 120.3 13 13 2.8e-06 0.0042 17.4 3.4 2 25 712 736 711 737 0.88 Zinc-finger double domain zf-C2H2_4 PF13894.6 24 ZFX-202 - 755 2.1e-31 105.8 108.9 1 13 1e-07 0.00015 22.3 0.9 1 23 375 397 375 398 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZFX-202 - 755 2.1e-31 105.8 108.9 2 13 0.0012 1.8 9.6 1.6 1 23 406 428 406 429 0.91 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZFX-202 - 755 2.1e-31 105.8 108.9 3 13 0.0012 1.7 9.7 1.3 2 23 439 460 438 461 0.88 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZFX-202 - 755 2.1e-31 105.8 108.9 4 13 0.00031 0.46 11.4 0.6 1 24 469 492 469 492 0.89 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZFX-202 - 755 2.1e-31 105.8 108.9 5 13 2.4e-05 0.036 14.9 1.6 1 23 498 520 498 521 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZFX-202 - 755 2.1e-31 105.8 108.9 6 13 3.1e-05 0.046 14.6 1.2 1 24 526 549 526 549 0.86 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZFX-202 - 755 2.1e-31 105.8 108.9 7 13 0.00018 0.27 12.2 0.2 1 23 555 577 555 578 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZFX-202 - 755 2.1e-31 105.8 108.9 8 13 0.0035 5.2 8.2 4.7 1 24 583 606 583 606 0.90 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZFX-202 - 755 2.1e-31 105.8 108.9 9 13 6e-06 0.009 16.8 2.3 1 23 612 634 612 635 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZFX-202 - 755 2.1e-31 105.8 108.9 10 13 0.0051 7.6 7.7 2.2 1 24 640 663 640 663 0.86 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZFX-202 - 755 2.1e-31 105.8 108.9 11 13 1.3e-06 0.0019 18.9 3.2 1 23 669 691 669 692 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZFX-202 - 755 2.1e-31 105.8 108.9 12 13 0.00018 0.27 12.2 0.3 1 24 697 720 697 720 0.81 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZFX-202 - 755 2.1e-31 105.8 108.9 13 13 7.1e-05 0.11 13.4 4.5 1 24 726 749 726 749 0.96 C2H2-type zinc finger zf-H2C2_5 PF13909.6 26 ZFX-202 - 755 7.4e-27 92.8 102.9 1 12 0.041 62 3.5 0.3 16 24 390 397 385 398 0.78 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 ZFX-202 - 755 7.4e-27 92.8 102.9 2 12 2.8e-05 0.042 13.6 5.6 1 25 406 429 406 429 0.96 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 ZFX-202 - 755 7.4e-27 92.8 102.9 3 12 1.5e-08 2.3e-05 24.1 0.3 1 26 469 494 469 494 0.96 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 ZFX-202 - 755 7.4e-27 92.8 102.9 4 12 0.00014 0.2 11.4 1.5 12 26 509 522 508 522 0.94 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 ZFX-202 - 755 7.4e-27 92.8 102.9 5 12 2.8e-10 4.1e-07 29.6 5.8 1 26 526 551 526 551 0.98 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 ZFX-202 - 755 7.4e-27 92.8 102.9 6 12 1.8 2.6e+03 -1.7 0.2 1 6 555 560 555 578 0.57 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 ZFX-202 - 755 7.4e-27 92.8 102.9 7 12 3.4e-06 0.0051 16.5 6.5 2 26 584 608 583 608 0.95 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 ZFX-202 - 755 7.4e-27 92.8 102.9 8 12 0.028 42 4.0 3.2 2 26 613 636 612 636 0.85 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 ZFX-202 - 755 7.4e-27 92.8 102.9 9 12 6e-07 0.0009 18.9 0.6 1 26 640 665 640 665 0.95 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 ZFX-202 - 755 7.4e-27 92.8 102.9 10 12 0.00073 1.1 9.1 1.0 13 26 681 693 679 693 0.90 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 ZFX-202 - 755 7.4e-27 92.8 102.9 11 12 1.1e-07 0.00017 21.3 0.7 1 26 697 722 697 722 0.97 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 ZFX-202 - 755 7.4e-27 92.8 102.9 12 12 4.4 6.5e+03 -3.0 2.5 1 6 726 731 726 731 0.91 C2H2-type zinc-finger domain zf-C2H2_jaz PF12171.8 27 ZFX-202 - 755 4.3e-13 49.2 74.9 1 13 5.5e-05 0.082 13.2 0.2 2 24 375 397 374 398 0.91 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZFX-202 - 755 4.3e-13 49.2 74.9 2 13 0.003 4.5 7.7 3.5 1 25 405 429 405 429 0.95 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZFX-202 - 755 4.3e-13 49.2 74.9 3 13 0.011 17 5.9 0.2 3 17 439 453 437 457 0.82 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZFX-202 - 755 4.3e-13 49.2 74.9 4 13 1.4 2e+03 -0.8 0.4 2 20 469 487 468 488 0.73 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZFX-202 - 755 4.3e-13 49.2 74.9 5 13 2.8e-05 0.041 14.2 0.0 2 22 498 518 497 518 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZFX-202 - 755 4.3e-13 49.2 74.9 6 13 0.0024 3.6 8.0 1.3 4 24 528 548 525 549 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZFX-202 - 755 4.3e-13 49.2 74.9 7 13 0.15 2.2e+02 2.3 0.2 2 20 555 573 554 573 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZFX-202 - 755 4.3e-13 49.2 74.9 8 13 0.054 80 3.7 2.6 4 23 585 604 582 607 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZFX-202 - 755 4.3e-13 49.2 74.9 9 13 1.8e-05 0.027 14.8 0.1 2 21 612 631 611 632 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZFX-202 - 755 4.3e-13 49.2 74.9 10 13 2 2.9e+03 -1.3 0.2 4 23 642 661 640 662 0.78 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZFX-202 - 755 4.3e-13 49.2 74.9 11 13 8.9e-05 0.13 12.6 1.1 2 24 669 691 668 692 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZFX-202 - 755 4.3e-13 49.2 74.9 12 13 0.18 2.6e+02 2.0 0.3 4 22 699 717 696 720 0.88 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZFX-202 - 755 4.3e-13 49.2 74.9 13 13 0.00035 0.52 10.7 0.2 2 21 726 745 725 745 0.93 Zinc-finger double-stranded RNA-binding zinc_ribbon_15 PF17032.5 86 ZFX-202 - 755 2.2e-08 34.7 47.4 1 7 0.0084 13 6.7 0.4 38 79 375 419 369 421 0.77 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZFX-202 - 755 2.2e-08 34.7 47.4 2 7 0.0017 2.5 8.9 1.8 32 77 432 480 429 483 0.70 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZFX-202 - 755 2.2e-08 34.7 47.4 3 7 0.0069 10 6.9 0.4 31 76 491 536 486 541 0.84 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZFX-202 - 755 2.2e-08 34.7 47.4 4 7 0.002 3 8.6 2.2 34 78 551 595 543 598 0.86 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZFX-202 - 755 2.2e-08 34.7 47.4 5 7 3.8e-05 0.056 14.2 1.3 28 77 602 651 600 655 0.92 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZFX-202 - 755 2.2e-08 34.7 47.4 6 7 2.1e-05 0.032 15.0 2.2 28 78 659 709 653 715 0.89 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZFX-202 - 755 2.2e-08 34.7 47.4 7 7 0.11 1.6e+02 3.1 0.1 28 60 716 748 709 752 0.83 zinc-ribbon family # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFX-202.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFX-202.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFX-202.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFX-202.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFX-202.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:59:08 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- Zfx_Zfy_act PF04704.13 330 ZFX-203 - 805 1.1e-151 504.6 17.6 1 2 2.2 3.5e+03 -3.2 0.6 25 60 41 53 23 69 0.42 Zfx / Zfy transcription activation region Zfx_Zfy_act PF04704.13 330 ZFX-203 - 805 1.1e-151 504.6 17.6 2 2 6.6e-155 1.1e-151 504.6 17.6 1 330 70 410 70 410 0.99 Zfx / Zfy transcription activation region zf-C2H2 PF00096.26 23 ZFX-203 - 805 1.7e-42 141.5 113.5 1 13 4.1e-08 6.7e-05 23.1 2.0 1 23 425 447 425 447 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZFX-203 - 805 1.7e-42 141.5 113.5 2 13 9.6e-05 0.16 12.5 2.8 1 23 456 478 456 478 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZFX-203 - 805 1.7e-42 141.5 113.5 3 13 8.5e-06 0.014 15.8 1.0 2 23 489 510 488 510 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZFX-203 - 805 1.7e-42 141.5 113.5 4 13 0.002 3.3 8.4 0.4 1 23 519 542 519 542 0.93 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZFX-203 - 805 1.7e-42 141.5 113.5 5 13 6.2e-09 1e-05 25.7 2.1 1 23 548 570 548 570 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZFX-203 - 805 1.7e-42 141.5 113.5 6 13 3.5e-06 0.0056 17.1 1.6 1 23 576 599 576 599 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZFX-203 - 805 1.7e-42 141.5 113.5 7 13 0.00062 1 10.0 0.2 1 23 605 627 605 627 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZFX-203 - 805 1.7e-42 141.5 113.5 8 13 8.8e-05 0.14 12.6 4.9 1 23 633 656 633 656 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZFX-203 - 805 1.7e-42 141.5 113.5 9 13 1.1e-06 0.0017 18.7 2.1 1 23 662 684 662 684 0.94 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZFX-203 - 805 1.7e-42 141.5 113.5 10 13 0.003 4.9 7.8 1.7 1 23 690 713 690 713 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZFX-203 - 805 1.7e-42 141.5 113.5 11 13 2.7e-08 4.5e-05 23.7 4.2 1 23 719 741 719 741 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZFX-203 - 805 1.7e-42 141.5 113.5 12 13 6.2e-06 0.01 16.3 0.3 1 23 747 770 747 770 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZFX-203 - 805 1.7e-42 141.5 113.5 13 13 5.9e-06 0.0097 16.3 5.5 1 23 776 798 776 799 0.95 Zinc finger, C2H2 type zf-H2C2_2 PF13465.6 26 ZFX-203 - 805 5.7e-38 127.7 120.3 1 13 0.0019 3.1 8.4 0.2 13 26 423 436 418 436 0.85 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZFX-203 - 805 5.7e-38 127.7 120.3 2 13 6.5e-06 0.011 16.2 4.7 2 25 440 466 439 467 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZFX-203 - 805 5.7e-38 127.7 120.3 3 13 0.00054 0.89 10.1 1.8 1 26 474 499 473 499 0.86 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZFX-203 - 805 5.7e-38 127.7 120.3 4 13 0.0077 13 6.5 2.3 4 24 505 528 502 529 0.70 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZFX-203 - 805 5.7e-38 127.7 120.3 5 13 0.00012 0.19 12.2 1.1 2 26 534 559 534 559 0.90 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZFX-203 - 805 5.7e-38 127.7 120.3 6 13 1.7e-11 2.7e-08 33.9 1.2 2 23 563 584 562 586 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZFX-203 - 805 5.7e-38 127.7 120.3 7 13 2.7e-06 0.0043 17.4 0.7 1 24 590 614 590 616 0.90 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZFX-203 - 805 5.7e-38 127.7 120.3 8 13 0.076 1.2e+02 3.3 1.7 4 25 622 643 619 644 0.81 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZFX-203 - 805 5.7e-38 127.7 120.3 9 13 1.4e-07 0.00022 21.5 2.1 1 24 647 671 647 673 0.90 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZFX-203 - 805 5.7e-38 127.7 120.3 10 13 7.5e-05 0.12 12.8 3.0 2 23 677 698 676 700 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZFX-203 - 805 5.7e-38 127.7 120.3 11 13 9e-07 0.0015 18.9 0.6 2 25 705 729 704 730 0.90 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZFX-203 - 805 5.7e-38 127.7 120.3 12 13 1.4e-08 2.2e-05 24.6 1.6 2 25 734 757 733 758 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZFX-203 - 805 5.7e-38 127.7 120.3 13 13 2.8e-06 0.0045 17.3 3.4 2 25 762 786 761 787 0.88 Zinc-finger double domain zf-C2H2_4 PF13894.6 24 ZFX-203 - 805 5.5e-31 104.6 108.9 1 13 1e-07 0.00016 22.2 0.9 1 23 425 447 425 448 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZFX-203 - 805 5.5e-31 104.6 108.9 2 13 0.0012 1.9 9.5 1.6 1 23 456 478 456 479 0.91 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZFX-203 - 805 5.5e-31 104.6 108.9 3 13 0.0012 1.9 9.6 1.3 2 23 489 510 488 511 0.88 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZFX-203 - 805 5.5e-31 104.6 108.9 4 13 0.00031 0.5 11.3 0.6 1 24 519 542 519 542 0.89 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZFX-203 - 805 5.5e-31 104.6 108.9 5 13 2.4e-05 0.039 14.8 1.6 1 23 548 570 548 571 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZFX-203 - 805 5.5e-31 104.6 108.9 6 13 3e-05 0.05 14.5 1.2 1 24 576 599 576 599 0.86 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZFX-203 - 805 5.5e-31 104.6 108.9 7 13 0.00018 0.29 12.1 0.2 1 23 605 627 605 628 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZFX-203 - 805 5.5e-31 104.6 108.9 8 13 0.0035 5.6 8.1 4.7 1 24 633 656 633 656 0.90 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZFX-203 - 805 5.5e-31 104.6 108.9 9 13 6e-06 0.0097 16.7 2.3 1 23 662 684 662 685 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZFX-203 - 805 5.5e-31 104.6 108.9 10 13 0.005 8.2 7.6 2.2 1 24 690 713 690 713 0.86 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZFX-203 - 805 5.5e-31 104.6 108.9 11 13 1.3e-06 0.002 18.8 3.2 1 23 719 741 719 742 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZFX-203 - 805 5.5e-31 104.6 108.9 12 13 0.00018 0.29 12.1 0.3 1 24 747 770 747 770 0.81 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZFX-203 - 805 5.5e-31 104.6 108.9 13 13 7e-05 0.11 13.3 4.5 1 24 776 799 776 799 0.96 C2H2-type zinc finger zf-H2C2_5 PF13909.6 26 ZFX-203 - 805 1.6e-26 91.7 102.8 1 12 0.04 66 3.4 0.3 16 24 440 447 435 448 0.78 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 ZFX-203 - 805 1.6e-26 91.7 102.8 2 12 2.7e-05 0.045 13.5 5.6 1 25 456 479 456 479 0.96 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 ZFX-203 - 805 1.6e-26 91.7 102.8 3 12 1.5e-08 2.5e-05 24.0 0.3 1 26 519 544 519 544 0.96 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 ZFX-203 - 805 1.6e-26 91.7 102.8 4 12 0.00013 0.22 11.3 1.5 12 26 559 572 558 572 0.94 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 ZFX-203 - 805 1.6e-26 91.7 102.8 5 12 2.7e-10 4.4e-07 29.5 5.8 1 26 576 601 576 601 0.98 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 ZFX-203 - 805 1.6e-26 91.7 102.8 6 12 1.7 2.8e+03 -1.8 0.2 1 6 605 610 605 628 0.57 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 ZFX-203 - 805 1.6e-26 91.7 102.8 7 12 3.4e-06 0.0055 16.4 6.5 2 26 634 658 633 658 0.95 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 ZFX-203 - 805 1.6e-26 91.7 102.8 8 12 0.025 41 4.0 3.1 2 26 663 686 662 686 0.85 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 ZFX-203 - 805 1.6e-26 91.7 102.8 9 12 5.9e-07 0.00097 18.8 0.6 1 26 690 715 690 715 0.95 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 ZFX-203 - 805 1.6e-26 91.7 102.8 10 12 0.00072 1.2 9.0 1.0 13 26 731 743 729 743 0.90 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 ZFX-203 - 805 1.6e-26 91.7 102.8 11 12 1.1e-07 0.00018 21.2 0.7 1 26 747 772 747 772 0.97 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 ZFX-203 - 805 1.6e-26 91.7 102.8 12 12 4.3 7e+03 -3.1 2.5 1 6 776 781 776 781 0.91 C2H2-type zinc-finger domain zf-C2H2_jaz PF12171.8 27 ZFX-203 - 805 1e-12 48.0 74.9 1 13 5.4e-05 0.089 13.1 0.2 2 24 425 447 424 448 0.91 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZFX-203 - 805 1e-12 48.0 74.9 2 13 0.003 4.9 7.6 3.5 1 25 455 479 455 479 0.95 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZFX-203 - 805 1e-12 48.0 74.9 3 13 0.011 18 5.8 0.2 3 17 489 503 487 507 0.82 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZFX-203 - 805 1e-12 48.0 74.9 4 13 1.3 2.2e+03 -0.9 0.4 2 20 519 537 518 538 0.73 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZFX-203 - 805 1e-12 48.0 74.9 5 13 2.7e-05 0.045 14.1 0.0 2 22 548 568 547 568 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZFX-203 - 805 1e-12 48.0 74.9 6 13 0.0024 3.8 7.9 1.3 4 24 578 598 575 599 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZFX-203 - 805 1e-12 48.0 74.9 7 13 0.14 2.3e+02 2.2 0.2 2 20 605 623 604 623 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZFX-203 - 805 1e-12 48.0 74.9 8 13 0.053 87 3.6 2.6 4 23 635 654 632 657 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZFX-203 - 805 1e-12 48.0 74.9 9 13 1.8e-05 0.029 14.7 0.1 2 21 662 681 661 682 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZFX-203 - 805 1e-12 48.0 74.9 10 13 1.9 3.2e+03 -1.4 0.2 4 23 692 711 690 712 0.78 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZFX-203 - 805 1e-12 48.0 74.9 11 13 8.8e-05 0.14 12.5 1.1 2 24 719 741 718 742 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZFX-203 - 805 1e-12 48.0 74.9 12 13 0.17 2.8e+02 1.9 0.3 4 22 749 767 746 770 0.88 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZFX-203 - 805 1e-12 48.0 74.9 13 13 0.00034 0.55 10.6 0.2 2 21 776 795 775 795 0.93 Zinc-finger double-stranded RNA-binding zinc_ribbon_15 PF17032.5 86 ZFX-203 - 805 3.7e-08 34.0 47.4 1 7 0.0083 14 6.6 0.4 38 79 425 469 419 471 0.77 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZFX-203 - 805 3.7e-08 34.0 47.4 2 7 0.0016 2.7 8.8 1.8 32 77 482 530 479 533 0.70 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZFX-203 - 805 3.7e-08 34.0 47.4 3 7 0.0068 11 6.8 0.4 31 76 541 586 536 591 0.84 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZFX-203 - 805 3.7e-08 34.0 47.4 4 7 0.002 3.3 8.5 2.2 34 78 601 645 593 648 0.86 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZFX-203 - 805 3.7e-08 34.0 47.4 5 7 3.7e-05 0.061 14.1 1.3 28 77 652 701 650 705 0.92 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZFX-203 - 805 3.7e-08 34.0 47.4 6 7 2.1e-05 0.035 14.9 2.3 28 78 709 759 703 765 0.89 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZFX-203 - 805 3.7e-08 34.0 47.4 7 7 0.11 1.7e+02 3.0 0.1 28 60 766 798 759 802 0.83 zinc-ribbon family # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFX-203.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFX-203.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFX-203.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFX-203.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFX-203.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:59:09 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- Zfx_Zfy_act PF04704.13 330 ZFX-204 - 844 1.2e-151 504.5 17.6 1 2 2.3 3.7e+03 -3.3 0.6 25 60 80 92 62 108 0.42 Zfx / Zfy transcription activation region Zfx_Zfy_act PF04704.13 330 ZFX-204 - 844 1.2e-151 504.5 17.6 2 2 7.3e-155 1.2e-151 504.5 17.6 1 330 109 449 109 449 0.99 Zfx / Zfy transcription activation region zf-C2H2 PF00096.26 23 ZFX-204 - 844 3.3e-42 140.6 113.5 1 13 4.4e-08 7.1e-05 23.0 2.0 1 23 464 486 464 486 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZFX-204 - 844 3.3e-42 140.6 113.5 2 13 0.0001 0.17 12.4 2.8 1 23 495 517 495 517 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZFX-204 - 844 3.3e-42 140.6 113.5 3 13 8.9e-06 0.015 15.8 1.0 2 23 528 549 527 549 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZFX-204 - 844 3.3e-42 140.6 113.5 4 13 0.0021 3.5 8.3 0.4 1 23 558 581 558 581 0.93 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZFX-204 - 844 3.3e-42 140.6 113.5 5 13 6.6e-09 1.1e-05 25.6 2.1 1 23 587 609 587 609 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZFX-204 - 844 3.3e-42 140.6 113.5 6 13 3.7e-06 0.006 17.0 1.6 1 23 615 638 615 638 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZFX-204 - 844 3.3e-42 140.6 113.5 7 13 0.00065 1.1 9.9 0.2 1 23 644 666 644 666 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZFX-204 - 844 3.3e-42 140.6 113.5 8 13 9.3e-05 0.15 12.6 4.9 1 23 672 695 672 695 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZFX-204 - 844 3.3e-42 140.6 113.5 9 13 1.1e-06 0.0018 18.6 2.1 1 23 701 723 701 723 0.94 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZFX-204 - 844 3.3e-42 140.6 113.5 10 13 0.0032 5.2 7.7 1.7 1 23 729 752 729 752 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZFX-204 - 844 3.3e-42 140.6 113.5 11 13 2.9e-08 4.7e-05 23.6 4.2 1 23 758 780 758 780 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZFX-204 - 844 3.3e-42 140.6 113.5 12 13 6.6e-06 0.011 16.2 0.3 1 23 786 809 786 809 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZFX-204 - 844 3.3e-42 140.6 113.5 13 13 6.3e-06 0.01 16.2 5.5 1 23 815 837 815 838 0.95 Zinc finger, C2H2 type zf-H2C2_2 PF13465.6 26 ZFX-204 - 844 1.2e-37 126.7 120.3 1 13 0.002 3.2 8.3 0.2 13 26 462 475 457 475 0.85 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZFX-204 - 844 1.2e-37 126.7 120.3 2 13 6.9e-06 0.011 16.1 4.7 2 25 479 505 478 506 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZFX-204 - 844 1.2e-37 126.7 120.3 3 13 0.00057 0.94 10.0 1.8 1 26 513 538 512 538 0.86 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZFX-204 - 844 1.2e-37 126.7 120.3 4 13 0.0081 13 6.4 2.3 4 24 544 567 541 568 0.70 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZFX-204 - 844 1.2e-37 126.7 120.3 5 13 0.00012 0.2 12.1 1.1 2 26 573 598 573 598 0.90 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZFX-204 - 844 1.2e-37 126.7 120.3 6 13 1.8e-11 2.9e-08 33.8 1.2 2 23 602 623 601 625 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZFX-204 - 844 1.2e-37 126.7 120.3 7 13 2.8e-06 0.0046 17.3 0.7 1 24 629 653 629 655 0.90 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZFX-204 - 844 1.2e-37 126.7 120.3 8 13 0.08 1.3e+02 3.2 1.7 4 25 661 682 658 683 0.81 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZFX-204 - 844 1.2e-37 126.7 120.3 9 13 1.5e-07 0.00024 21.4 2.1 1 24 686 710 686 712 0.90 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZFX-204 - 844 1.2e-37 126.7 120.3 10 13 7.9e-05 0.13 12.7 3.0 2 23 716 737 715 739 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZFX-204 - 844 1.2e-37 126.7 120.3 11 13 9.5e-07 0.0016 18.8 0.6 2 25 744 768 743 769 0.90 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZFX-204 - 844 1.2e-37 126.7 120.3 12 13 1.4e-08 2.4e-05 24.6 1.6 2 25 773 796 772 797 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZFX-204 - 844 1.2e-37 126.7 120.3 13 13 2.9e-06 0.0048 17.3 3.4 2 25 801 825 800 826 0.88 Zinc-finger double domain zf-C2H2_4 PF13894.6 24 ZFX-204 - 844 1e-30 103.7 108.9 1 13 1.1e-07 0.00017 22.1 0.9 1 23 464 486 464 487 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZFX-204 - 844 1e-30 103.7 108.9 2 13 0.0012 2 9.5 1.6 1 23 495 517 495 518 0.91 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZFX-204 - 844 1e-30 103.7 108.9 3 13 0.0012 2 9.5 1.3 2 23 528 549 527 550 0.88 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZFX-204 - 844 1e-30 103.7 108.9 4 13 0.00032 0.53 11.3 0.6 1 24 558 581 558 581 0.89 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZFX-204 - 844 1e-30 103.7 108.9 5 13 2.5e-05 0.041 14.7 1.6 1 23 587 609 587 610 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZFX-204 - 844 1e-30 103.7 108.9 6 13 3.2e-05 0.052 14.4 1.2 1 24 615 638 615 638 0.86 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZFX-204 - 844 1e-30 103.7 108.9 7 13 0.00019 0.3 12.0 0.2 1 23 644 666 644 667 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZFX-204 - 844 1e-30 103.7 108.9 8 13 0.0036 5.9 8.0 4.7 1 24 672 695 672 695 0.90 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZFX-204 - 844 1e-30 103.7 108.9 9 13 6.3e-06 0.01 16.6 2.3 1 23 701 723 701 724 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZFX-204 - 844 1e-30 103.7 108.9 10 13 0.0053 8.6 7.5 2.2 1 24 729 752 729 752 0.86 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZFX-204 - 844 1e-30 103.7 108.9 11 13 1.3e-06 0.0022 18.7 3.2 1 23 758 780 758 781 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZFX-204 - 844 1e-30 103.7 108.9 12 13 0.00019 0.3 12.0 0.3 1 24 786 809 786 809 0.81 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZFX-204 - 844 1e-30 103.7 108.9 13 13 7.4e-05 0.12 13.3 4.5 1 24 815 838 815 838 0.96 C2H2-type zinc finger zf-H2C2_5 PF13909.6 26 ZFX-204 - 844 2.6e-26 91.0 102.7 1 12 0.043 69 3.3 0.3 16 24 479 486 474 487 0.78 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 ZFX-204 - 844 2.6e-26 91.0 102.7 2 12 2.9e-05 0.047 13.4 5.6 1 25 495 518 495 518 0.96 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 ZFX-204 - 844 2.6e-26 91.0 102.7 3 12 1.6e-08 2.6e-05 23.9 0.3 1 26 558 583 558 583 0.96 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 ZFX-204 - 844 2.6e-26 91.0 102.7 4 12 0.00014 0.23 11.3 1.5 12 26 598 611 597 611 0.94 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 ZFX-204 - 844 2.6e-26 91.0 102.7 5 12 2.9e-10 4.7e-07 29.4 5.8 1 26 615 640 615 640 0.98 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 ZFX-204 - 844 2.6e-26 91.0 102.7 6 12 1.8 3e+03 -1.9 0.2 1 6 644 649 644 667 0.57 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 ZFX-204 - 844 2.6e-26 91.0 102.7 7 12 3.6e-06 0.0058 16.4 6.5 2 26 673 697 672 697 0.95 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 ZFX-204 - 844 2.6e-26 91.0 102.7 8 12 0.024 40 4.1 3.0 2 26 702 725 701 725 0.85 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 ZFX-204 - 844 2.6e-26 91.0 102.7 9 12 6.3e-07 0.001 18.8 0.6 1 26 729 754 729 754 0.95 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 ZFX-204 - 844 2.6e-26 91.0 102.7 10 12 0.00076 1.2 8.9 1.0 13 26 770 782 768 782 0.90 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 ZFX-204 - 844 2.6e-26 91.0 102.7 11 12 1.2e-07 0.00019 21.1 0.7 1 26 786 811 786 811 0.97 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 ZFX-204 - 844 2.6e-26 91.0 102.7 12 12 4.5 7.3e+03 -3.2 2.5 1 6 815 820 815 820 0.91 C2H2-type zinc-finger domain zf-C2H2_jaz PF12171.8 27 ZFX-204 - 844 2e-12 47.1 74.9 1 13 5.7e-05 0.094 13.0 0.2 2 24 464 486 463 487 0.91 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZFX-204 - 844 2e-12 47.1 74.9 2 13 0.0031 5.1 7.5 3.5 1 25 494 518 494 518 0.95 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZFX-204 - 844 2e-12 47.1 74.9 3 13 0.012 19 5.7 0.2 3 17 528 542 526 546 0.82 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZFX-204 - 844 2e-12 47.1 74.9 4 13 1.4 2.3e+03 -0.9 0.4 2 20 558 576 557 577 0.73 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZFX-204 - 844 2e-12 47.1 74.9 5 13 2.9e-05 0.047 14.0 0.0 2 22 587 607 586 607 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZFX-204 - 844 2e-12 47.1 74.9 6 13 0.0025 4 7.8 1.3 4 24 617 637 614 638 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZFX-204 - 844 2e-12 47.1 74.9 7 13 0.15 2.5e+02 2.1 0.2 2 20 644 662 643 662 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZFX-204 - 844 2e-12 47.1 74.9 8 13 0.056 91 3.5 2.6 4 23 674 693 671 696 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZFX-204 - 844 2e-12 47.1 74.9 9 13 1.9e-05 0.03 14.6 0.1 2 21 701 720 700 721 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZFX-204 - 844 2e-12 47.1 74.9 10 13 2 3.3e+03 -1.5 0.2 4 23 731 750 729 751 0.78 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZFX-204 - 844 2e-12 47.1 74.9 11 13 9.2e-05 0.15 12.4 1.1 2 24 758 780 757 781 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZFX-204 - 844 2e-12 47.1 74.9 12 13 0.18 3e+02 1.9 0.3 4 22 788 806 785 809 0.88 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZFX-204 - 844 2e-12 47.1 74.9 13 13 0.00036 0.58 10.5 0.2 2 21 815 834 814 834 0.93 Zinc-finger double-stranded RNA-binding zinc_ribbon_15 PF17032.5 86 ZFX-204 - 844 5.4e-08 33.5 47.4 1 7 0.0088 14 6.5 0.4 38 79 464 508 458 510 0.77 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZFX-204 - 844 5.4e-08 33.5 47.4 2 7 0.0017 2.8 8.7 1.8 32 77 521 569 518 572 0.70 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZFX-204 - 844 5.4e-08 33.5 47.4 3 7 0.0072 12 6.8 0.4 31 76 580 625 575 630 0.84 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZFX-204 - 844 5.4e-08 33.5 47.4 4 7 0.0021 3.5 8.5 2.2 34 78 640 684 632 687 0.86 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZFX-204 - 844 5.4e-08 33.5 47.4 5 7 4e-05 0.065 14.0 1.3 28 77 691 740 689 744 0.92 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZFX-204 - 844 5.4e-08 33.5 47.4 6 7 2.3e-05 0.037 14.8 2.3 28 78 748 798 742 804 0.89 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZFX-204 - 844 5.4e-08 33.5 47.4 7 7 0.11 1.8e+02 2.9 0.1 28 60 805 837 798 841 0.83 zinc-ribbon family # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFX-204.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFX-204.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFX-204.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFX-204.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFX-204.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:59:09 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFX-205.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFX-205.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFX-205.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFX-205.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFX-205.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:59:09 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFX-206.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFX-206.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFX-206.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFX-206.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFX-206.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:59:10 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFX-207.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFX-207.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFX-207.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFX-207.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFX-207.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:59:10 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFX-208.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFX-208.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFX-208.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFX-208.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFX-208.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:59:10 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFX-209.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFX-209.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFX-209.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFX-209.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFX-209.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:59:11 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFX-210.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFX-210.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFX-210.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFX-210.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFX-210.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:59:11 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- Zfx_Zfy_act PF04704.13 330 ZFX-211 - 576 9.2e-87 291.2 0.9 1 1 8.6e-90 1.3e-86 290.7 0.9 156 330 1 181 1 181 0.99 Zfx / Zfy transcription activation region zf-C2H2 PF00096.26 23 ZFX-211 - 576 1.2e-44 148.3 113.5 1 13 3.1e-08 4.6e-05 23.6 2.0 1 23 196 218 196 218 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZFX-211 - 576 1.2e-44 148.3 113.5 2 13 7.1e-05 0.11 13.0 2.8 1 23 227 249 227 249 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZFX-211 - 576 1.2e-44 148.3 113.5 3 13 6.3e-06 0.0094 16.4 1.0 2 23 260 281 259 281 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZFX-211 - 576 1.2e-44 148.3 113.5 4 13 0.0015 2.2 8.9 0.4 1 23 290 313 290 313 0.93 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZFX-211 - 576 1.2e-44 148.3 113.5 5 13 4.6e-09 6.9e-06 26.2 2.1 1 23 319 341 319 341 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZFX-211 - 576 1.2e-44 148.3 113.5 6 13 2.6e-06 0.0038 17.6 1.6 1 23 347 370 347 370 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZFX-211 - 576 1.2e-44 148.3 113.5 7 13 0.00046 0.69 10.5 0.2 1 23 376 398 376 398 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZFX-211 - 576 1.2e-44 148.3 113.5 8 13 6.5e-05 0.097 13.2 4.9 1 23 404 427 404 427 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZFX-211 - 576 1.2e-44 148.3 113.5 9 13 7.9e-07 0.0012 19.2 2.1 1 23 433 455 433 455 0.94 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZFX-211 - 576 1.2e-44 148.3 113.5 10 13 0.0022 3.3 8.3 1.7 1 23 461 484 461 484 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZFX-211 - 576 1.2e-44 148.3 113.5 11 13 2e-08 3e-05 24.2 4.2 1 23 490 512 490 512 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZFX-211 - 576 1.2e-44 148.3 113.5 12 13 4.6e-06 0.0069 16.8 0.3 1 23 518 541 518 541 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZFX-211 - 576 1.2e-44 148.3 113.5 13 13 4.4e-06 0.0066 16.9 5.5 1 23 547 569 547 570 0.95 Zinc finger, C2H2 type zf-H2C2_2 PF13465.6 26 ZFX-211 - 576 3.3e-40 134.8 120.3 1 14 0.0014 2.1 8.9 0.2 13 26 194 207 189 207 0.85 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZFX-211 - 576 3.3e-40 134.8 120.3 2 14 4.8e-06 0.0072 16.7 4.7 2 25 211 237 210 238 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZFX-211 - 576 3.3e-40 134.8 120.3 3 14 0.0004 0.6 10.6 1.8 1 26 245 270 244 270 0.86 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZFX-211 - 576 3.3e-40 134.8 120.3 4 14 0.0057 8.5 7.0 2.3 4 24 276 299 273 300 0.70 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZFX-211 - 576 3.3e-40 134.8 120.3 5 14 8.6e-05 0.13 12.8 1.1 2 26 305 330 305 330 0.90 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZFX-211 - 576 3.3e-40 134.8 120.3 6 14 1.2e-11 1.8e-08 34.4 1.2 2 23 334 355 333 357 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZFX-211 - 576 3.3e-40 134.8 120.3 7 14 2e-06 0.0029 18.0 0.7 1 24 361 385 361 387 0.90 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZFX-211 - 576 3.3e-40 134.8 120.3 8 14 0.056 84 3.9 1.7 4 25 393 414 390 415 0.81 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZFX-211 - 576 3.3e-40 134.8 120.3 9 14 1e-07 0.00015 22.0 2.1 1 24 418 442 418 444 0.90 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZFX-211 - 576 3.3e-40 134.8 120.3 10 14 5.6e-05 0.083 13.4 3.0 2 23 448 469 447 471 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZFX-211 - 576 3.3e-40 134.8 120.3 11 14 6.7e-07 0.00099 19.4 0.6 2 25 476 500 475 501 0.90 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZFX-211 - 576 3.3e-40 134.8 120.3 12 14 1e-08 1.5e-05 25.2 1.6 2 25 505 528 504 529 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZFX-211 - 576 3.3e-40 134.8 120.3 13 14 2.1e-06 0.0031 17.9 3.4 2 25 533 557 532 558 0.88 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZFX-211 - 576 3.3e-40 134.8 120.3 14 14 7.7 1.2e+04 -2.9 2.2 3 12 563 572 563 572 0.80 Zinc-finger double domain zf-C2H2_4 PF13894.6 24 ZFX-211 - 576 3.8e-33 111.3 108.9 1 13 7.4e-08 0.00011 22.7 0.9 1 23 196 218 196 219 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZFX-211 - 576 3.8e-33 111.3 108.9 2 13 0.00086 1.3 10.1 1.6 1 23 227 249 227 250 0.91 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZFX-211 - 576 3.8e-33 111.3 108.9 3 13 0.00085 1.3 10.1 1.3 2 23 260 281 259 282 0.88 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZFX-211 - 576 3.8e-33 111.3 108.9 4 13 0.00023 0.34 11.9 0.6 1 24 290 313 290 313 0.89 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZFX-211 - 576 3.8e-33 111.3 108.9 5 13 1.8e-05 0.026 15.3 1.6 1 23 319 341 319 342 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZFX-211 - 576 3.8e-33 111.3 108.9 6 13 2.2e-05 0.033 15.0 1.2 1 24 347 370 347 370 0.86 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZFX-211 - 576 3.8e-33 111.3 108.9 7 13 0.00013 0.19 12.6 0.2 1 23 376 398 376 399 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZFX-211 - 576 3.8e-33 111.3 108.9 8 13 0.0025 3.8 8.6 4.7 1 24 404 427 404 427 0.90 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZFX-211 - 576 3.8e-33 111.3 108.9 9 13 4.4e-06 0.0066 17.2 2.3 1 23 433 455 433 456 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZFX-211 - 576 3.8e-33 111.3 108.9 10 13 0.0037 5.5 8.1 2.2 1 24 461 484 461 484 0.86 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZFX-211 - 576 3.8e-33 111.3 108.9 11 13 9.2e-07 0.0014 19.3 3.2 1 23 490 512 490 513 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZFX-211 - 576 3.8e-33 111.3 108.9 12 13 0.00013 0.19 12.6 0.3 1 24 518 541 518 541 0.81 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZFX-211 - 576 3.8e-33 111.3 108.9 13 13 5.2e-05 0.077 13.9 4.5 1 24 547 570 547 570 0.96 C2H2-type zinc finger zf-H2C2_5 PF13909.6 26 ZFX-211 - 576 6.7e-27 92.9 107.8 1 12 0.031 46 3.9 0.3 16 24 211 218 206 219 0.78 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 ZFX-211 - 576 6.7e-27 92.9 107.8 2 12 2e-05 0.03 14.1 5.6 1 25 227 250 227 250 0.96 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 ZFX-211 - 576 6.7e-27 92.9 107.8 3 12 1.1e-08 1.7e-05 24.5 0.3 1 26 290 315 290 315 0.96 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 ZFX-211 - 576 6.7e-27 92.9 107.8 4 12 0.0001 0.15 11.8 1.5 12 26 330 343 329 343 0.94 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 ZFX-211 - 576 6.7e-27 92.9 107.8 5 12 2e-10 3e-07 30.1 5.8 1 26 347 372 347 372 0.98 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 ZFX-211 - 576 6.7e-27 92.9 107.8 6 12 4.6 6.9e+03 -3.1 1.9 1 6 376 381 376 399 0.56 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 ZFX-211 - 576 6.7e-27 92.9 107.8 7 12 2.5e-06 0.0038 17.0 6.5 2 26 405 429 404 429 0.95 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 ZFX-211 - 576 6.7e-27 92.9 107.8 8 12 0.023 34 4.3 3.4 2 26 434 457 433 457 0.85 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 ZFX-211 - 576 6.7e-27 92.9 107.8 9 12 4.4e-07 0.00066 19.4 0.6 1 26 461 486 461 486 0.95 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 ZFX-211 - 576 6.7e-27 92.9 107.8 10 12 0.00054 0.81 9.5 1.0 13 26 502 514 500 514 0.90 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 ZFX-211 - 576 6.7e-27 92.9 107.8 11 12 8.3e-08 0.00012 21.7 0.7 1 26 518 543 518 543 0.97 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 ZFX-211 - 576 6.7e-27 92.9 107.8 12 12 3.3 4.9e+03 -2.6 2.5 1 6 547 552 547 552 0.91 C2H2-type zinc-finger domain zf-C2H2_jaz PF12171.8 27 ZFX-211 - 576 1.8e-14 53.6 75.7 1 13 4e-05 0.06 13.6 0.2 2 24 196 218 195 219 0.91 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZFX-211 - 576 1.8e-14 53.6 75.7 2 13 0.0022 3.3 8.1 3.5 1 25 226 250 226 250 0.95 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZFX-211 - 576 1.8e-14 53.6 75.7 3 13 0.0082 12 6.3 0.2 3 17 260 274 258 278 0.82 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZFX-211 - 576 1.8e-14 53.6 75.7 4 13 0.82 1.2e+03 -0.1 0.3 2 20 290 308 289 310 0.76 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZFX-211 - 576 1.8e-14 53.6 75.7 5 13 2e-05 0.03 14.6 0.0 2 22 319 339 318 339 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZFX-211 - 576 1.8e-14 53.6 75.7 6 13 0.0017 2.6 8.4 1.3 4 24 349 369 346 370 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZFX-211 - 576 1.8e-14 53.6 75.7 7 13 0.11 1.6e+02 2.7 0.2 2 20 376 394 375 394 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZFX-211 - 576 1.8e-14 53.6 75.7 8 13 0.04 59 4.1 2.6 4 23 406 425 403 428 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZFX-211 - 576 1.8e-14 53.6 75.7 9 13 1.3e-05 0.02 15.2 0.1 2 21 433 452 432 453 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZFX-211 - 576 1.8e-14 53.6 75.7 10 13 1.6 2.4e+03 -1.0 0.5 4 23 463 482 461 484 0.80 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZFX-211 - 576 1.8e-14 53.6 75.7 11 13 6.5e-05 0.097 13.0 1.1 2 24 490 512 489 513 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZFX-211 - 576 1.8e-14 53.6 75.7 12 13 0.13 1.9e+02 2.5 0.3 4 22 520 538 517 541 0.88 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZFX-211 - 576 1.8e-14 53.6 75.7 13 13 0.00025 0.38 11.1 0.2 2 21 547 566 546 566 0.93 Zinc-finger double-stranded RNA-binding zinc_ribbon_15 PF17032.5 86 ZFX-211 - 576 2.3e-09 37.9 47.4 1 7 0.006 8.9 7.1 0.4 38 79 196 240 190 242 0.77 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZFX-211 - 576 2.3e-09 37.9 47.4 2 7 0.0012 1.8 9.4 1.8 32 77 253 301 250 304 0.70 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZFX-211 - 576 2.3e-09 37.9 47.4 3 7 0.0049 7.3 7.4 0.4 31 76 312 357 307 362 0.84 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZFX-211 - 576 2.3e-09 37.9 47.4 4 7 0.0014 2.1 9.1 2.2 34 78 372 416 364 419 0.86 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZFX-211 - 576 2.3e-09 37.9 47.4 5 7 2.7e-05 0.04 14.7 1.3 28 77 423 472 421 476 0.92 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZFX-211 - 576 2.3e-09 37.9 47.4 6 7 1.5e-05 0.022 15.5 2.2 28 78 480 530 474 536 0.89 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZFX-211 - 576 2.3e-09 37.9 47.4 7 7 0.077 1.2e+02 3.6 0.1 28 60 537 569 530 573 0.83 zinc-ribbon family # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFX-211.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFX-211.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFX-211.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFX-211.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFX-211.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:59:12 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- Zfx_Zfy_act PF04704.13 330 ZFY-201 - 801 3e-146 486.7 19.9 1 1 2e-149 3e-146 486.7 19.9 3 330 74 406 71 406 0.99 Zfx / Zfy transcription activation region zf-C2H2 PF00096.26 23 ZFY-201 - 801 3.1e-40 134.4 116.5 1 13 4.5e-08 6.7e-05 23.1 2.0 1 23 421 443 421 443 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZFY-201 - 801 3.1e-40 134.4 116.5 2 13 0.0013 1.9 9.1 4.5 1 23 452 474 452 474 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZFY-201 - 801 3.1e-40 134.4 116.5 3 13 9.2e-06 0.014 15.8 1.0 2 23 485 506 484 506 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZFY-201 - 801 3.1e-40 134.4 116.5 4 13 0.0022 3.3 8.4 0.4 1 23 515 538 515 538 0.93 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZFY-201 - 801 3.1e-40 134.4 116.5 5 13 7.3e-09 1.1e-05 25.6 2.1 1 23 544 566 544 566 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZFY-201 - 801 3.1e-40 134.4 116.5 6 13 7.4e-07 0.0011 19.3 1.5 1 23 572 595 572 595 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZFY-201 - 801 3.1e-40 134.4 116.5 7 13 0.0005 0.75 10.4 0.4 1 23 601 623 601 623 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZFY-201 - 801 3.1e-40 134.4 116.5 8 13 0.00044 0.65 10.6 4.9 1 23 629 652 629 652 0.94 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZFY-201 - 801 3.1e-40 134.4 116.5 9 13 2e-06 0.003 17.9 2.2 1 23 658 680 658 680 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZFY-201 - 801 3.1e-40 134.4 116.5 10 13 0.0033 4.9 7.8 1.7 1 23 686 709 686 709 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZFY-201 - 801 3.1e-40 134.4 116.5 11 13 1.6e-07 0.00024 21.4 4.1 1 23 715 737 715 737 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZFY-201 - 801 3.1e-40 134.4 116.5 12 13 6.7e-06 0.01 16.3 0.3 1 23 743 766 743 766 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZFY-201 - 801 3.1e-40 134.4 116.5 13 13 6.5e-06 0.0096 16.3 5.5 1 23 772 794 772 795 0.95 Zinc finger, C2H2 type zf-H2C2_2 PF13465.6 26 ZFY-201 - 801 7.7e-39 130.4 124.0 1 13 0.002 3 8.4 0.2 13 26 419 432 414 432 0.85 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZFY-201 - 801 7.7e-39 130.4 124.0 2 13 1.9e-05 0.028 14.8 6.3 2 25 436 462 435 463 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZFY-201 - 801 7.7e-39 130.4 124.0 3 13 0.00059 0.88 10.1 1.8 1 26 470 495 469 495 0.86 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZFY-201 - 801 7.7e-39 130.4 124.0 4 13 0.0084 12 6.5 2.3 4 24 501 524 498 525 0.70 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZFY-201 - 801 7.7e-39 130.4 124.0 5 13 0.00013 0.19 12.2 1.1 2 26 530 555 530 555 0.90 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZFY-201 - 801 7.7e-39 130.4 124.0 6 13 8.3e-12 1.2e-08 34.9 1.0 2 23 559 580 558 582 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZFY-201 - 801 7.7e-39 130.4 124.0 7 13 7.9e-07 0.0012 19.2 0.6 1 24 586 610 586 612 0.90 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZFY-201 - 801 7.7e-39 130.4 124.0 8 13 0.037 56 4.4 2.8 3 25 617 639 615 640 0.84 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZFY-201 - 801 7.7e-39 130.4 124.0 9 13 3.7e-06 0.0056 17.1 3.1 1 24 643 667 643 669 0.88 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZFY-201 - 801 7.7e-39 130.4 124.0 10 13 2.9e-06 0.0043 17.4 3.2 2 23 673 694 672 696 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZFY-201 - 801 7.7e-39 130.4 124.0 11 13 9.8e-07 0.0015 18.9 0.6 2 25 701 725 700 726 0.90 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZFY-201 - 801 7.7e-39 130.4 124.0 12 13 1.5e-08 2.2e-05 24.7 1.6 2 25 730 753 729 754 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZFY-201 - 801 7.7e-39 130.4 124.0 13 13 3e-06 0.0045 17.4 3.4 2 25 758 782 757 783 0.88 Zinc-finger double domain zf-C2H2_4 PF13894.6 24 ZFY-201 - 801 1.8e-29 99.9 111.9 1 13 1.1e-07 0.00016 22.2 0.9 1 23 421 443 421 444 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZFY-201 - 801 1.8e-29 99.9 111.9 2 13 0.006 9 7.4 3.1 1 23 452 474 452 475 0.90 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZFY-201 - 801 1.8e-29 99.9 111.9 3 13 0.0013 1.9 9.6 1.3 2 23 485 506 484 507 0.88 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZFY-201 - 801 1.8e-29 99.9 111.9 4 13 0.00033 0.5 11.4 0.6 1 24 515 538 515 538 0.89 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZFY-201 - 801 1.8e-29 99.9 111.9 5 13 1.6e-05 0.025 15.4 1.5 1 23 544 566 544 567 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZFY-201 - 801 1.8e-29 99.9 111.9 6 13 3.5e-05 0.053 14.4 1.0 1 24 572 595 572 595 0.86 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZFY-201 - 801 1.8e-29 99.9 111.9 7 13 0.00035 0.52 11.3 0.4 1 23 601 623 601 624 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZFY-201 - 801 1.8e-29 99.9 111.9 8 13 0.004 6 8.0 5.1 1 24 629 652 629 652 0.90 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZFY-201 - 801 1.8e-29 99.9 111.9 9 13 2.5e-05 0.037 14.9 2.8 1 23 658 680 658 681 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZFY-201 - 801 1.8e-29 99.9 111.9 10 13 0.0054 8.1 7.6 2.2 1 24 686 709 686 709 0.86 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZFY-201 - 801 1.8e-29 99.9 111.9 11 13 9.2e-07 0.0014 19.3 2.8 1 23 715 737 715 738 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZFY-201 - 801 1.8e-29 99.9 111.9 12 13 0.00019 0.29 12.1 0.3 1 24 743 766 743 766 0.81 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZFY-201 - 801 1.8e-29 99.9 111.9 13 13 7.6e-05 0.11 13.3 4.5 1 24 772 795 772 795 0.96 C2H2-type zinc finger zf-H2C2_5 PF13909.6 26 ZFY-201 - 801 2e-23 81.8 109.6 1 13 8.1 1.2e+04 -3.8 0.1 10 21 125 136 125 137 0.81 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 ZFY-201 - 801 2e-23 81.8 109.6 2 13 0.044 66 3.4 0.3 16 24 436 443 431 444 0.78 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 ZFY-201 - 801 2e-23 81.8 109.6 3 13 0.0012 1.7 8.4 7.2 1 25 452 475 452 475 0.94 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 ZFY-201 - 801 2e-23 81.8 109.6 4 13 1.6e-08 2.4e-05 24.0 0.3 1 26 515 540 515 540 0.96 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 ZFY-201 - 801 2e-23 81.8 109.6 5 13 0.00017 0.26 11.1 1.3 12 26 555 568 554 568 0.94 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 ZFY-201 - 801 2e-23 81.8 109.6 6 13 2.9e-10 4.3e-07 29.6 5.4 1 26 572 597 572 597 0.98 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 ZFY-201 - 801 2e-23 81.8 109.6 7 13 7.9 1.2e+04 -3.8 2.5 1 24 601 623 601 624 0.52 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 ZFY-201 - 801 2e-23 81.8 109.6 8 13 3.7e-06 0.0055 16.4 6.9 2 26 630 654 629 654 0.95 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 ZFY-201 - 801 2e-23 81.8 109.6 9 13 0.0022 3.3 7.6 0.6 12 26 669 682 668 682 0.91 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 ZFY-201 - 801 2e-23 81.8 109.6 10 13 6.5e-07 0.00096 18.9 0.6 1 26 686 711 686 711 0.95 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 ZFY-201 - 801 2e-23 81.8 109.6 11 13 0.0014 2.1 8.2 1.2 14 26 728 739 725 739 0.89 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 ZFY-201 - 801 2e-23 81.8 109.6 12 13 1.2e-07 0.00018 21.2 0.7 1 26 743 768 743 768 0.97 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 ZFY-201 - 801 2e-23 81.8 109.6 13 13 4.6 6.9e+03 -3.1 2.5 1 6 772 777 772 777 0.91 C2H2-type zinc-finger domain zf-C2H2_jaz PF12171.8 27 ZFY-201 - 801 5.9e-12 45.5 75.8 1 13 5.9e-05 0.088 13.1 0.2 2 24 421 443 420 444 0.91 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZFY-201 - 801 5.9e-12 45.5 75.8 2 13 0.048 71 3.9 5.0 4 25 454 475 451 475 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZFY-201 - 801 5.9e-12 45.5 75.8 3 13 0.012 18 5.8 0.2 3 17 485 499 483 503 0.82 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZFY-201 - 801 5.9e-12 45.5 75.8 4 13 1.4 2.2e+03 -0.9 0.4 2 20 515 533 514 534 0.73 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZFY-201 - 801 5.9e-12 45.5 75.8 5 13 5.3e-05 0.079 13.3 0.0 2 22 544 564 543 564 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZFY-201 - 801 5.9e-12 45.5 75.8 6 13 0.00094 1.4 9.3 1.4 4 24 574 594 571 595 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZFY-201 - 801 5.9e-12 45.5 75.8 7 13 0.1 1.6e+02 2.8 0.1 2 20 601 619 600 620 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZFY-201 - 801 5.9e-12 45.5 75.8 8 13 0.15 2.2e+02 2.3 2.7 4 23 631 650 628 652 0.89 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZFY-201 - 801 5.9e-12 45.5 75.8 9 13 3.9e-05 0.058 13.7 0.2 2 21 658 677 657 678 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZFY-201 - 801 5.9e-12 45.5 75.8 10 13 2.1 3.2e+03 -1.4 0.2 4 23 688 707 686 708 0.78 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZFY-201 - 801 5.9e-12 45.5 75.8 11 13 3.3e-05 0.049 13.9 1.2 2 24 715 737 714 738 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZFY-201 - 801 5.9e-12 45.5 75.8 12 13 0.19 2.8e+02 2.0 0.3 4 22 745 763 742 766 0.88 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZFY-201 - 801 5.9e-12 45.5 75.8 13 13 0.00037 0.55 10.6 0.2 2 21 772 791 771 791 0.93 Zinc-finger double-stranded RNA-binding zinc_ribbon_15 PF17032.5 86 ZFY-201 - 801 6.1e-08 33.3 47.9 1 7 0.011 16 6.3 0.4 38 79 421 465 415 467 0.77 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZFY-201 - 801 6.1e-08 33.3 47.9 2 7 0.0018 2.7 8.8 1.8 32 77 478 526 475 529 0.70 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZFY-201 - 801 6.1e-08 33.3 47.9 3 7 0.01 15 6.4 0.3 31 76 537 582 532 587 0.84 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZFY-201 - 801 6.1e-08 33.3 47.9 4 7 0.0016 2.4 8.9 2.3 34 78 597 641 589 644 0.86 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZFY-201 - 801 6.1e-08 33.3 47.9 5 7 7.4e-05 0.11 13.2 1.7 28 77 648 697 646 701 0.92 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZFY-201 - 801 6.1e-08 33.3 47.9 6 7 1.9e-05 0.028 15.2 2.3 28 78 705 755 699 761 0.89 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZFY-201 - 801 6.1e-08 33.3 47.9 7 7 0.11 1.7e+02 3.0 0.1 28 60 762 794 755 798 0.83 zinc-ribbon family # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFY-201.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFY-201.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFY-201.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFY-201.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFY-201.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:59:12 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- Zfx_Zfy_act PF04704.13 330 ZFY-202 - 801 3e-146 486.7 19.9 1 1 2e-149 3e-146 486.7 19.9 3 330 74 406 71 406 0.99 Zfx / Zfy transcription activation region zf-C2H2 PF00096.26 23 ZFY-202 - 801 3.1e-40 134.4 116.5 1 13 4.5e-08 6.7e-05 23.1 2.0 1 23 421 443 421 443 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZFY-202 - 801 3.1e-40 134.4 116.5 2 13 0.0013 1.9 9.1 4.5 1 23 452 474 452 474 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZFY-202 - 801 3.1e-40 134.4 116.5 3 13 9.2e-06 0.014 15.8 1.0 2 23 485 506 484 506 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZFY-202 - 801 3.1e-40 134.4 116.5 4 13 0.0022 3.3 8.4 0.4 1 23 515 538 515 538 0.93 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZFY-202 - 801 3.1e-40 134.4 116.5 5 13 7.3e-09 1.1e-05 25.6 2.1 1 23 544 566 544 566 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZFY-202 - 801 3.1e-40 134.4 116.5 6 13 7.4e-07 0.0011 19.3 1.5 1 23 572 595 572 595 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZFY-202 - 801 3.1e-40 134.4 116.5 7 13 0.0005 0.75 10.4 0.4 1 23 601 623 601 623 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZFY-202 - 801 3.1e-40 134.4 116.5 8 13 0.00044 0.65 10.6 4.9 1 23 629 652 629 652 0.94 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZFY-202 - 801 3.1e-40 134.4 116.5 9 13 2e-06 0.003 17.9 2.2 1 23 658 680 658 680 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZFY-202 - 801 3.1e-40 134.4 116.5 10 13 0.0033 4.9 7.8 1.7 1 23 686 709 686 709 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZFY-202 - 801 3.1e-40 134.4 116.5 11 13 1.6e-07 0.00024 21.4 4.1 1 23 715 737 715 737 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZFY-202 - 801 3.1e-40 134.4 116.5 12 13 6.7e-06 0.01 16.3 0.3 1 23 743 766 743 766 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZFY-202 - 801 3.1e-40 134.4 116.5 13 13 6.5e-06 0.0096 16.3 5.5 1 23 772 794 772 795 0.95 Zinc finger, C2H2 type zf-H2C2_2 PF13465.6 26 ZFY-202 - 801 7.7e-39 130.4 124.0 1 13 0.002 3 8.4 0.2 13 26 419 432 414 432 0.85 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZFY-202 - 801 7.7e-39 130.4 124.0 2 13 1.9e-05 0.028 14.8 6.3 2 25 436 462 435 463 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZFY-202 - 801 7.7e-39 130.4 124.0 3 13 0.00059 0.88 10.1 1.8 1 26 470 495 469 495 0.86 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZFY-202 - 801 7.7e-39 130.4 124.0 4 13 0.0084 12 6.5 2.3 4 24 501 524 498 525 0.70 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZFY-202 - 801 7.7e-39 130.4 124.0 5 13 0.00013 0.19 12.2 1.1 2 26 530 555 530 555 0.90 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZFY-202 - 801 7.7e-39 130.4 124.0 6 13 8.3e-12 1.2e-08 34.9 1.0 2 23 559 580 558 582 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZFY-202 - 801 7.7e-39 130.4 124.0 7 13 7.9e-07 0.0012 19.2 0.6 1 24 586 610 586 612 0.90 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZFY-202 - 801 7.7e-39 130.4 124.0 8 13 0.037 56 4.4 2.8 3 25 617 639 615 640 0.84 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZFY-202 - 801 7.7e-39 130.4 124.0 9 13 3.7e-06 0.0056 17.1 3.1 1 24 643 667 643 669 0.88 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZFY-202 - 801 7.7e-39 130.4 124.0 10 13 2.9e-06 0.0043 17.4 3.2 2 23 673 694 672 696 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZFY-202 - 801 7.7e-39 130.4 124.0 11 13 9.8e-07 0.0015 18.9 0.6 2 25 701 725 700 726 0.90 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZFY-202 - 801 7.7e-39 130.4 124.0 12 13 1.5e-08 2.2e-05 24.7 1.6 2 25 730 753 729 754 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZFY-202 - 801 7.7e-39 130.4 124.0 13 13 3e-06 0.0045 17.4 3.4 2 25 758 782 757 783 0.88 Zinc-finger double domain zf-C2H2_4 PF13894.6 24 ZFY-202 - 801 1.8e-29 99.9 111.9 1 13 1.1e-07 0.00016 22.2 0.9 1 23 421 443 421 444 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZFY-202 - 801 1.8e-29 99.9 111.9 2 13 0.006 9 7.4 3.1 1 23 452 474 452 475 0.90 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZFY-202 - 801 1.8e-29 99.9 111.9 3 13 0.0013 1.9 9.6 1.3 2 23 485 506 484 507 0.88 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZFY-202 - 801 1.8e-29 99.9 111.9 4 13 0.00033 0.5 11.4 0.6 1 24 515 538 515 538 0.89 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZFY-202 - 801 1.8e-29 99.9 111.9 5 13 1.6e-05 0.025 15.4 1.5 1 23 544 566 544 567 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZFY-202 - 801 1.8e-29 99.9 111.9 6 13 3.5e-05 0.053 14.4 1.0 1 24 572 595 572 595 0.86 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZFY-202 - 801 1.8e-29 99.9 111.9 7 13 0.00035 0.52 11.3 0.4 1 23 601 623 601 624 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZFY-202 - 801 1.8e-29 99.9 111.9 8 13 0.004 6 8.0 5.1 1 24 629 652 629 652 0.90 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZFY-202 - 801 1.8e-29 99.9 111.9 9 13 2.5e-05 0.037 14.9 2.8 1 23 658 680 658 681 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZFY-202 - 801 1.8e-29 99.9 111.9 10 13 0.0054 8.1 7.6 2.2 1 24 686 709 686 709 0.86 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZFY-202 - 801 1.8e-29 99.9 111.9 11 13 9.2e-07 0.0014 19.3 2.8 1 23 715 737 715 738 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZFY-202 - 801 1.8e-29 99.9 111.9 12 13 0.00019 0.29 12.1 0.3 1 24 743 766 743 766 0.81 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZFY-202 - 801 1.8e-29 99.9 111.9 13 13 7.6e-05 0.11 13.3 4.5 1 24 772 795 772 795 0.96 C2H2-type zinc finger zf-H2C2_5 PF13909.6 26 ZFY-202 - 801 2e-23 81.8 109.6 1 13 8.1 1.2e+04 -3.8 0.1 10 21 125 136 125 137 0.81 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 ZFY-202 - 801 2e-23 81.8 109.6 2 13 0.044 66 3.4 0.3 16 24 436 443 431 444 0.78 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 ZFY-202 - 801 2e-23 81.8 109.6 3 13 0.0012 1.7 8.4 7.2 1 25 452 475 452 475 0.94 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 ZFY-202 - 801 2e-23 81.8 109.6 4 13 1.6e-08 2.4e-05 24.0 0.3 1 26 515 540 515 540 0.96 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 ZFY-202 - 801 2e-23 81.8 109.6 5 13 0.00017 0.26 11.1 1.3 12 26 555 568 554 568 0.94 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 ZFY-202 - 801 2e-23 81.8 109.6 6 13 2.9e-10 4.3e-07 29.6 5.4 1 26 572 597 572 597 0.98 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 ZFY-202 - 801 2e-23 81.8 109.6 7 13 7.9 1.2e+04 -3.8 2.5 1 24 601 623 601 624 0.52 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 ZFY-202 - 801 2e-23 81.8 109.6 8 13 3.7e-06 0.0055 16.4 6.9 2 26 630 654 629 654 0.95 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 ZFY-202 - 801 2e-23 81.8 109.6 9 13 0.0022 3.3 7.6 0.6 12 26 669 682 668 682 0.91 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 ZFY-202 - 801 2e-23 81.8 109.6 10 13 6.5e-07 0.00096 18.9 0.6 1 26 686 711 686 711 0.95 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 ZFY-202 - 801 2e-23 81.8 109.6 11 13 0.0014 2.1 8.2 1.2 14 26 728 739 725 739 0.89 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 ZFY-202 - 801 2e-23 81.8 109.6 12 13 1.2e-07 0.00018 21.2 0.7 1 26 743 768 743 768 0.97 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 ZFY-202 - 801 2e-23 81.8 109.6 13 13 4.6 6.9e+03 -3.1 2.5 1 6 772 777 772 777 0.91 C2H2-type zinc-finger domain zf-C2H2_jaz PF12171.8 27 ZFY-202 - 801 5.9e-12 45.5 75.8 1 13 5.9e-05 0.088 13.1 0.2 2 24 421 443 420 444 0.91 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZFY-202 - 801 5.9e-12 45.5 75.8 2 13 0.048 71 3.9 5.0 4 25 454 475 451 475 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZFY-202 - 801 5.9e-12 45.5 75.8 3 13 0.012 18 5.8 0.2 3 17 485 499 483 503 0.82 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZFY-202 - 801 5.9e-12 45.5 75.8 4 13 1.4 2.2e+03 -0.9 0.4 2 20 515 533 514 534 0.73 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZFY-202 - 801 5.9e-12 45.5 75.8 5 13 5.3e-05 0.079 13.3 0.0 2 22 544 564 543 564 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZFY-202 - 801 5.9e-12 45.5 75.8 6 13 0.00094 1.4 9.3 1.4 4 24 574 594 571 595 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZFY-202 - 801 5.9e-12 45.5 75.8 7 13 0.1 1.6e+02 2.8 0.1 2 20 601 619 600 620 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZFY-202 - 801 5.9e-12 45.5 75.8 8 13 0.15 2.2e+02 2.3 2.7 4 23 631 650 628 652 0.89 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZFY-202 - 801 5.9e-12 45.5 75.8 9 13 3.9e-05 0.058 13.7 0.2 2 21 658 677 657 678 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZFY-202 - 801 5.9e-12 45.5 75.8 10 13 2.1 3.2e+03 -1.4 0.2 4 23 688 707 686 708 0.78 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZFY-202 - 801 5.9e-12 45.5 75.8 11 13 3.3e-05 0.049 13.9 1.2 2 24 715 737 714 738 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZFY-202 - 801 5.9e-12 45.5 75.8 12 13 0.19 2.8e+02 2.0 0.3 4 22 745 763 742 766 0.88 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZFY-202 - 801 5.9e-12 45.5 75.8 13 13 0.00037 0.55 10.6 0.2 2 21 772 791 771 791 0.93 Zinc-finger double-stranded RNA-binding zinc_ribbon_15 PF17032.5 86 ZFY-202 - 801 6.1e-08 33.3 47.9 1 7 0.011 16 6.3 0.4 38 79 421 465 415 467 0.77 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZFY-202 - 801 6.1e-08 33.3 47.9 2 7 0.0018 2.7 8.8 1.8 32 77 478 526 475 529 0.70 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZFY-202 - 801 6.1e-08 33.3 47.9 3 7 0.01 15 6.4 0.3 31 76 537 582 532 587 0.84 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZFY-202 - 801 6.1e-08 33.3 47.9 4 7 0.0016 2.4 8.9 2.3 34 78 597 641 589 644 0.86 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZFY-202 - 801 6.1e-08 33.3 47.9 5 7 7.4e-05 0.11 13.2 1.7 28 77 648 697 646 701 0.92 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZFY-202 - 801 6.1e-08 33.3 47.9 6 7 1.9e-05 0.028 15.2 2.3 28 78 705 755 699 761 0.89 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZFY-202 - 801 6.1e-08 33.3 47.9 7 7 0.11 1.7e+02 3.0 0.1 28 60 762 794 755 798 0.83 zinc-ribbon family # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFY-202.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFY-202.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFY-202.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFY-202.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFY-202.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:59:13 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFY-203.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFY-203.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFY-203.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFY-203.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFY-203.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:59:13 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- Zfx_Zfy_act PF04704.13 330 ZFY-204 - 724 3.4e-115 384.7 30.0 1 2 4.4e-101 6.1e-98 328.0 24.4 3 238 48 283 45 285 0.98 Zfx / Zfy transcription activation region Zfx_Zfy_act PF04704.13 330 ZFY-204 - 724 3.4e-115 384.7 30.0 2 2 1.1e-19 1.5e-16 60.4 0.3 285 330 284 329 283 329 0.98 Zfx / Zfy transcription activation region zf-C2H2 PF00096.26 23 ZFY-204 - 724 6.9e-41 136.5 116.5 1 13 4.3e-08 6e-05 23.3 2.0 1 23 344 366 344 366 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZFY-204 - 724 6.9e-41 136.5 116.5 2 13 0.0012 1.7 9.3 4.5 1 23 375 397 375 397 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZFY-204 - 724 6.9e-41 136.5 116.5 3 13 8.9e-06 0.012 16.0 1.0 2 23 408 429 407 429 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZFY-204 - 724 6.9e-41 136.5 116.5 4 13 0.0021 2.9 8.5 0.4 1 23 438 461 438 461 0.93 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZFY-204 - 724 6.9e-41 136.5 116.5 5 13 7.1e-09 9.7e-06 25.8 2.1 1 23 467 489 467 489 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZFY-204 - 724 6.9e-41 136.5 116.5 6 13 7.2e-07 0.00099 19.4 1.5 1 23 495 518 495 518 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZFY-204 - 724 6.9e-41 136.5 116.5 7 13 0.00048 0.67 10.5 0.4 1 23 524 546 524 546 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZFY-204 - 724 6.9e-41 136.5 116.5 8 13 0.00042 0.58 10.7 4.9 1 23 552 575 552 575 0.94 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZFY-204 - 724 6.9e-41 136.5 116.5 9 13 1.9e-06 0.0027 18.1 2.2 1 23 581 603 581 603 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZFY-204 - 724 6.9e-41 136.5 116.5 10 13 0.0032 4.4 8.0 1.7 1 23 609 632 609 632 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZFY-204 - 724 6.9e-41 136.5 116.5 11 13 1.5e-07 0.00021 21.5 4.1 1 23 638 660 638 660 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZFY-204 - 724 6.9e-41 136.5 116.5 12 13 6.5e-06 0.009 16.4 0.3 1 23 666 689 666 689 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZFY-204 - 724 6.9e-41 136.5 116.5 13 13 6.2e-06 0.0086 16.5 5.5 1 23 695 717 695 718 0.95 Zinc finger, C2H2 type zf-H2C2_2 PF13465.6 26 ZFY-204 - 724 1.6e-39 132.6 124.0 1 13 0.002 2.7 8.6 0.2 13 26 342 355 337 355 0.85 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZFY-204 - 724 1.6e-39 132.6 124.0 2 13 1.8e-05 0.025 15.0 6.3 2 25 359 385 358 386 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZFY-204 - 724 1.6e-39 132.6 124.0 3 13 0.00057 0.78 10.3 1.8 1 26 393 418 392 418 0.86 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZFY-204 - 724 1.6e-39 132.6 124.0 4 13 0.0081 11 6.6 2.3 4 24 424 447 421 448 0.70 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZFY-204 - 724 1.6e-39 132.6 124.0 5 13 0.00012 0.17 12.4 1.1 2 26 453 478 453 478 0.90 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZFY-204 - 724 1.6e-39 132.6 124.0 6 13 8e-12 1.1e-08 35.1 1.0 2 23 482 503 481 505 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZFY-204 - 724 1.6e-39 132.6 124.0 7 13 7.6e-07 0.001 19.4 0.6 1 24 509 533 509 535 0.90 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZFY-204 - 724 1.6e-39 132.6 124.0 8 13 0.036 50 4.6 2.8 3 25 540 562 538 563 0.84 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZFY-204 - 724 1.6e-39 132.6 124.0 9 13 3.6e-06 0.005 17.2 3.1 1 24 566 590 566 592 0.88 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZFY-204 - 724 1.6e-39 132.6 124.0 10 13 2.8e-06 0.0039 17.6 3.2 2 23 596 617 595 619 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZFY-204 - 724 1.6e-39 132.6 124.0 11 13 9.4e-07 0.0013 19.1 0.6 2 25 624 648 623 649 0.90 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZFY-204 - 724 1.6e-39 132.6 124.0 12 13 1.4e-08 2e-05 24.8 1.6 2 25 653 676 652 677 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZFY-204 - 724 1.6e-39 132.6 124.0 13 13 2.9e-06 0.004 17.5 3.4 2 25 681 705 680 706 0.88 Zinc-finger double domain zf-C2H2_4 PF13894.6 24 ZFY-204 - 724 3.8e-30 101.9 111.9 1 13 1e-07 0.00014 22.4 0.9 1 23 344 366 344 367 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZFY-204 - 724 3.8e-30 101.9 111.9 2 13 0.0058 8 7.6 3.1 1 23 375 397 375 398 0.90 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZFY-204 - 724 3.8e-30 101.9 111.9 3 13 0.0012 1.7 9.7 1.3 2 23 408 429 407 430 0.88 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZFY-204 - 724 3.8e-30 101.9 111.9 4 13 0.00032 0.44 11.5 0.6 1 24 438 461 438 461 0.89 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZFY-204 - 724 3.8e-30 101.9 111.9 5 13 1.6e-05 0.022 15.6 1.5 1 23 467 489 467 490 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZFY-204 - 724 3.8e-30 101.9 111.9 6 13 3.4e-05 0.047 14.5 1.0 1 24 495 518 495 518 0.86 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZFY-204 - 724 3.8e-30 101.9 111.9 7 13 0.00034 0.46 11.4 0.4 1 23 524 546 524 547 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZFY-204 - 724 3.8e-30 101.9 111.9 8 13 0.0039 5.3 8.1 5.1 1 24 552 575 552 575 0.90 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZFY-204 - 724 3.8e-30 101.9 111.9 9 13 2.4e-05 0.033 15.0 2.8 1 23 581 603 581 604 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZFY-204 - 724 3.8e-30 101.9 111.9 10 13 0.0052 7.2 7.7 2.2 1 24 609 632 609 632 0.86 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZFY-204 - 724 3.8e-30 101.9 111.9 11 13 8.8e-07 0.0012 19.5 2.8 1 23 638 660 638 661 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZFY-204 - 724 3.8e-30 101.9 111.9 12 13 0.00018 0.25 12.3 0.3 1 24 666 689 666 689 0.81 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZFY-204 - 724 3.8e-30 101.9 111.9 13 13 7.3e-05 0.1 13.5 4.5 1 24 695 718 695 718 0.96 C2H2-type zinc finger zf-H2C2_5 PF13909.6 26 ZFY-204 - 724 5.3e-24 83.6 109.7 1 13 7.8 1.1e+04 -3.7 0.1 10 21 99 110 99 111 0.81 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 ZFY-204 - 724 5.3e-24 83.6 109.7 2 13 0.043 59 3.5 0.3 16 24 359 366 354 367 0.78 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 ZFY-204 - 724 5.3e-24 83.6 109.7 3 13 0.0011 1.6 8.6 7.2 1 25 375 398 375 398 0.94 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 ZFY-204 - 724 5.3e-24 83.6 109.7 4 13 1.6e-08 2.2e-05 24.1 0.3 1 26 438 463 438 463 0.96 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 ZFY-204 - 724 5.3e-24 83.6 109.7 5 13 0.00017 0.23 11.2 1.3 12 26 478 491 477 491 0.94 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 ZFY-204 - 724 5.3e-24 83.6 109.7 6 13 2.8e-10 3.9e-07 29.7 5.4 1 26 495 520 495 520 0.98 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 ZFY-204 - 724 5.3e-24 83.6 109.7 7 13 8 1.1e+04 -3.7 2.6 1 24 524 546 524 547 0.52 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 ZFY-204 - 724 5.3e-24 83.6 109.7 8 13 3.6e-06 0.0049 16.6 6.9 2 26 553 577 552 577 0.95 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 ZFY-204 - 724 5.3e-24 83.6 109.7 9 13 0.0021 2.9 7.7 0.6 12 26 592 605 591 605 0.91 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 ZFY-204 - 724 5.3e-24 83.6 109.7 10 13 6.2e-07 0.00086 19.0 0.6 1 26 609 634 609 634 0.95 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 ZFY-204 - 724 5.3e-24 83.6 109.7 11 13 0.0014 1.9 8.3 1.2 14 26 651 662 648 662 0.89 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 ZFY-204 - 724 5.3e-24 83.6 109.7 12 13 1.2e-07 0.00016 21.3 0.7 1 26 666 691 666 691 0.97 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 ZFY-204 - 724 5.3e-24 83.6 109.7 13 13 4.5 6.2e+03 -2.9 2.5 1 6 695 700 695 700 0.91 C2H2-type zinc-finger domain zf-C2H2_jaz PF12171.8 27 ZFY-204 - 724 1.5e-12 47.5 75.8 1 13 5.7e-05 0.079 13.3 0.2 2 24 344 366 343 367 0.91 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZFY-204 - 724 1.5e-12 47.5 75.8 2 13 0.046 64 4.0 5.0 4 25 377 398 374 398 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZFY-204 - 724 1.5e-12 47.5 75.8 3 13 0.011 16 5.9 0.2 3 17 408 422 406 426 0.82 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZFY-204 - 724 1.5e-12 47.5 75.8 4 13 1.4 1.9e+03 -0.7 0.4 2 20 438 456 437 457 0.74 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZFY-204 - 724 1.5e-12 47.5 75.8 5 13 5.1e-05 0.071 13.4 0.0 2 22 467 487 466 487 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZFY-204 - 724 1.5e-12 47.5 75.8 6 13 0.00091 1.3 9.4 1.4 4 24 497 517 494 518 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZFY-204 - 724 1.5e-12 47.5 75.8 7 13 0.1 1.4e+02 2.9 0.1 2 20 524 542 523 543 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZFY-204 - 724 1.5e-12 47.5 75.8 8 13 0.15 2e+02 2.4 2.7 4 23 554 573 551 575 0.89 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZFY-204 - 724 1.5e-12 47.5 75.8 9 13 3.7e-05 0.051 13.9 0.2 2 21 581 600 580 601 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZFY-204 - 724 1.5e-12 47.5 75.8 10 13 2 2.8e+03 -1.2 0.2 4 23 611 630 609 631 0.78 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZFY-204 - 724 1.5e-12 47.5 75.8 11 13 3.2e-05 0.044 14.1 1.2 2 24 638 660 637 661 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZFY-204 - 724 1.5e-12 47.5 75.8 12 13 0.18 2.5e+02 2.1 0.3 4 22 668 686 665 689 0.88 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZFY-204 - 724 1.5e-12 47.5 75.8 13 13 0.00036 0.49 10.7 0.2 2 21 695 714 694 714 0.93 Zinc-finger double-stranded RNA-binding zinc_ribbon_15 PF17032.5 86 ZFY-204 - 724 2.6e-08 34.5 47.9 1 7 0.011 14 6.5 0.4 38 79 344 388 338 390 0.77 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZFY-204 - 724 2.6e-08 34.5 47.9 2 7 0.0017 2.4 9.0 1.8 32 77 401 449 398 452 0.70 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZFY-204 - 724 2.6e-08 34.5 47.9 3 7 0.0096 13 6.6 0.3 31 76 460 505 455 510 0.84 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZFY-204 - 724 2.6e-08 34.5 47.9 4 7 0.0016 2.2 9.1 2.3 34 78 520 564 512 567 0.86 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZFY-204 - 724 2.6e-08 34.5 47.9 5 7 7e-05 0.096 13.4 1.7 28 77 571 620 569 624 0.92 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZFY-204 - 724 2.6e-08 34.5 47.9 6 7 1.8e-05 0.025 15.3 2.3 28 78 628 678 622 684 0.89 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZFY-204 - 724 2.6e-08 34.5 47.9 7 7 0.11 1.5e+02 3.2 0.1 28 60 685 717 678 721 0.83 zinc-ribbon family # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFY-204.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFY-204.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFY-204.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFY-204.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFY-204.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:59:13 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFY-205.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFY-205.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFY-205.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFY-205.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFY-205.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:59:14 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFY-206.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFY-206.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFY-206.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFY-206.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFY-206.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:59:14 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- Zfx_Zfy_act PF04704.13 330 ZFY-207 - 610 7.5e-90 301.4 3.0 1 1 8.3e-93 1.1e-89 300.8 3.0 142 330 22 215 19 215 0.99 Zfx / Zfy transcription activation region zf-C2H2 PF00096.26 23 ZFY-207 - 610 5.8e-42 139.9 116.5 1 13 3.5e-08 4.9e-05 23.6 2.0 1 23 230 252 230 252 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZFY-207 - 610 5.8e-42 139.9 116.5 2 13 0.001 1.4 9.5 4.5 1 23 261 283 261 283 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZFY-207 - 610 5.8e-42 139.9 116.5 3 13 7.3e-06 0.01 16.3 1.0 2 23 294 315 293 315 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZFY-207 - 610 5.8e-42 139.9 116.5 4 13 0.0017 2.4 8.8 0.4 1 23 324 347 324 347 0.93 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZFY-207 - 610 5.8e-42 139.9 116.5 5 13 5.8e-09 8e-06 26.0 2.1 1 23 353 375 353 375 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZFY-207 - 610 5.8e-42 139.9 116.5 6 13 5.9e-07 0.00081 19.7 1.5 1 23 381 404 381 404 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZFY-207 - 610 5.8e-42 139.9 116.5 7 13 0.00039 0.54 10.8 0.4 1 23 410 432 410 432 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZFY-207 - 610 5.8e-42 139.9 116.5 8 13 0.00034 0.47 11.0 4.9 1 23 438 461 438 461 0.94 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZFY-207 - 610 5.8e-42 139.9 116.5 9 13 1.6e-06 0.0022 18.4 2.2 1 23 467 489 467 489 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZFY-207 - 610 5.8e-42 139.9 116.5 10 13 0.0026 3.6 8.2 1.7 1 23 495 518 495 518 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZFY-207 - 610 5.8e-42 139.9 116.5 11 13 1.3e-07 0.00017 21.8 4.1 1 23 524 546 524 546 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZFY-207 - 610 5.8e-42 139.9 116.5 12 13 5.3e-06 0.0073 16.7 0.3 1 23 552 575 552 575 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZFY-207 - 610 5.8e-42 139.9 116.5 13 13 5.1e-06 0.007 16.8 5.5 1 23 581 603 581 604 0.95 Zinc finger, C2H2 type zf-H2C2_2 PF13465.6 26 ZFY-207 - 610 1.2e-40 136.1 124.0 1 14 0.0016 2.2 8.8 0.2 13 26 228 241 223 241 0.85 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZFY-207 - 610 1.2e-40 136.1 124.0 2 14 1.5e-05 0.021 15.3 6.3 2 25 245 271 244 272 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZFY-207 - 610 1.2e-40 136.1 124.0 3 14 0.00047 0.64 10.5 1.8 1 26 279 304 278 304 0.86 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZFY-207 - 610 1.2e-40 136.1 124.0 4 14 0.0066 9.1 6.9 2.3 4 24 310 333 307 334 0.70 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZFY-207 - 610 1.2e-40 136.1 124.0 5 14 0.0001 0.14 12.7 1.1 2 26 339 364 339 364 0.90 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZFY-207 - 610 1.2e-40 136.1 124.0 6 14 6.6e-12 9.1e-09 35.4 1.0 2 23 368 389 367 391 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZFY-207 - 610 1.2e-40 136.1 124.0 7 14 6.2e-07 0.00085 19.6 0.6 1 24 395 419 395 421 0.90 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZFY-207 - 610 1.2e-40 136.1 124.0 8 14 0.03 41 4.8 2.8 3 25 426 448 424 449 0.85 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZFY-207 - 610 1.2e-40 136.1 124.0 9 14 2.9e-06 0.004 17.5 3.1 1 24 452 476 452 478 0.88 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZFY-207 - 610 1.2e-40 136.1 124.0 10 14 2.3e-06 0.0032 17.8 3.2 2 23 482 503 481 505 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZFY-207 - 610 1.2e-40 136.1 124.0 11 14 7.7e-07 0.0011 19.3 0.6 2 25 510 534 509 535 0.90 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZFY-207 - 610 1.2e-40 136.1 124.0 12 14 1.2e-08 1.6e-05 25.1 1.6 2 25 539 562 538 563 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZFY-207 - 610 1.2e-40 136.1 124.0 13 14 2.4e-06 0.0033 17.8 3.4 2 25 567 591 566 592 0.88 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZFY-207 - 610 1.2e-40 136.1 124.0 14 14 8.9 1.2e+04 -3.0 2.2 3 12 597 606 597 606 0.80 Zinc-finger double domain zf-C2H2_4 PF13894.6 24 ZFY-207 - 610 3.3e-31 105.2 111.9 1 13 8.6e-08 0.00012 22.6 0.9 1 23 230 252 230 253 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZFY-207 - 610 3.3e-31 105.2 111.9 2 13 0.0047 6.5 7.9 3.1 1 23 261 283 261 284 0.90 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZFY-207 - 610 3.3e-31 105.2 111.9 3 13 0.00099 1.4 10.0 1.3 2 23 294 315 293 316 0.88 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZFY-207 - 610 3.3e-31 105.2 111.9 4 13 0.00026 0.36 11.8 0.6 1 24 324 347 324 347 0.89 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZFY-207 - 610 3.3e-31 105.2 111.9 5 13 1.3e-05 0.018 15.9 1.5 1 23 353 375 353 376 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZFY-207 - 610 3.3e-31 105.2 111.9 6 13 2.8e-05 0.038 14.8 1.0 1 24 381 404 381 404 0.86 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZFY-207 - 610 3.3e-31 105.2 111.9 7 13 0.00028 0.38 11.7 0.4 1 23 410 432 410 433 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZFY-207 - 610 3.3e-31 105.2 111.9 8 13 0.0032 4.4 8.4 5.1 1 24 438 461 438 461 0.90 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZFY-207 - 610 3.3e-31 105.2 111.9 9 13 2e-05 0.027 15.3 2.8 1 23 467 489 467 490 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZFY-207 - 610 3.3e-31 105.2 111.9 10 13 0.0043 5.9 8.0 2.2 1 24 495 518 495 518 0.86 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZFY-207 - 610 3.3e-31 105.2 111.9 11 13 7.2e-07 0.00099 19.8 2.8 1 23 524 546 524 547 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZFY-207 - 610 3.3e-31 105.2 111.9 12 13 0.00015 0.21 12.5 0.3 1 24 552 575 552 575 0.81 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZFY-207 - 610 3.3e-31 105.2 111.9 13 13 6e-05 0.083 13.8 4.5 1 24 581 604 581 604 0.96 C2H2-type zinc finger zf-H2C2_5 PF13909.6 26 ZFY-207 - 610 7.8e-26 89.5 106.4 1 12 0.035 49 3.8 0.3 16 24 245 252 240 253 0.78 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 ZFY-207 - 610 7.8e-26 89.5 106.4 2 12 0.00093 1.3 8.9 7.2 1 25 261 284 261 284 0.94 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 ZFY-207 - 610 7.8e-26 89.5 106.4 3 12 1.3e-08 1.8e-05 24.4 0.3 1 26 324 349 324 349 0.96 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 ZFY-207 - 610 7.8e-26 89.5 106.4 4 12 0.00014 0.19 11.5 1.3 12 26 364 377 363 377 0.94 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 ZFY-207 - 610 7.8e-26 89.5 106.4 5 12 2.3e-10 3.2e-07 30.0 5.4 1 26 381 406 381 406 0.98 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 ZFY-207 - 610 7.8e-26 89.5 106.4 6 12 7.6 1.1e+04 -3.7 2.8 1 24 410 432 410 433 0.52 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 ZFY-207 - 610 7.8e-26 89.5 106.4 7 12 2.9e-06 0.004 16.9 6.9 2 26 439 463 438 463 0.95 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 ZFY-207 - 610 7.8e-26 89.5 106.4 8 12 0.0018 2.4 8.0 0.6 12 26 478 491 477 491 0.91 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 ZFY-207 - 610 7.8e-26 89.5 106.4 9 12 5.1e-07 0.0007 19.3 0.6 1 26 495 520 495 520 0.95 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 ZFY-207 - 610 7.8e-26 89.5 106.4 10 12 0.0011 1.6 8.6 1.2 14 26 537 548 534 548 0.89 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 ZFY-207 - 610 7.8e-26 89.5 106.4 11 12 9.6e-08 0.00013 21.6 0.7 1 26 552 577 552 577 0.97 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 ZFY-207 - 610 7.8e-26 89.5 106.4 12 12 3.8 5.2e+03 -2.7 2.5 1 6 581 586 581 586 0.91 C2H2-type zinc-finger domain zf-C2H2_jaz PF12171.8 27 ZFY-207 - 610 7.6e-13 48.4 78.1 1 13 4.7e-05 0.065 13.6 0.2 2 24 230 252 229 253 0.91 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZFY-207 - 610 7.6e-13 48.4 78.1 2 13 0.038 52 4.3 5.0 4 25 263 284 260 284 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZFY-207 - 610 7.6e-13 48.4 78.1 3 13 0.0095 13 6.2 0.2 3 17 294 308 292 312 0.82 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZFY-207 - 610 7.6e-13 48.4 78.1 4 13 1.2 1.6e+03 -0.4 0.4 2 20 324 342 323 343 0.74 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZFY-207 - 610 7.6e-13 48.4 78.1 5 13 4.2e-05 0.058 13.7 0.0 2 22 353 373 352 373 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZFY-207 - 610 7.6e-13 48.4 78.1 6 13 0.00075 1 9.7 1.4 4 24 383 403 380 404 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZFY-207 - 610 7.6e-13 48.4 78.1 7 13 0.083 1.1e+02 3.2 0.1 2 20 410 428 409 429 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZFY-207 - 610 7.6e-13 48.4 78.1 8 13 0.25 3.4e+02 1.7 3.7 4 23 440 459 432 461 0.91 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZFY-207 - 610 7.6e-13 48.4 78.1 9 13 3.1e-05 0.042 14.1 0.2 2 21 467 486 466 487 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZFY-207 - 610 7.6e-13 48.4 78.1 10 13 1.9 2.6e+03 -1.1 0.5 4 23 497 516 495 518 0.80 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZFY-207 - 610 7.6e-13 48.4 78.1 11 13 2.6e-05 0.036 14.4 1.2 2 24 524 546 523 547 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZFY-207 - 610 7.6e-13 48.4 78.1 12 13 0.15 2.1e+02 2.4 0.3 4 22 554 572 551 575 0.88 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZFY-207 - 610 7.6e-13 48.4 78.1 13 13 0.00029 0.4 11.0 0.2 2 21 581 600 580 600 0.93 Zinc-finger double-stranded RNA-binding zinc_ribbon_15 PF17032.5 86 ZFY-207 - 610 7.6e-09 36.2 48.1 1 7 0.0085 12 6.8 0.4 38 79 230 274 224 276 0.77 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZFY-207 - 610 7.6e-09 36.2 48.1 2 7 0.0014 1.9 9.3 1.8 32 77 287 335 284 338 0.70 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZFY-207 - 610 7.6e-09 36.2 48.1 3 7 0.0078 11 6.9 0.3 31 76 346 391 341 396 0.84 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZFY-207 - 610 7.6e-09 36.2 48.1 4 7 0.0013 1.7 9.4 2.3 34 78 406 450 398 453 0.86 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZFY-207 - 610 7.6e-09 36.2 48.1 5 7 5.7e-05 0.079 13.7 1.7 28 77 457 506 455 510 0.92 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZFY-207 - 610 7.6e-09 36.2 48.1 6 7 1.4e-05 0.019 15.7 2.3 28 78 514 564 508 570 0.89 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZFY-207 - 610 7.6e-09 36.2 48.1 7 7 0.1 1.4e+02 3.3 0.2 28 60 571 603 567 607 0.83 zinc-ribbon family # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFY-207.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFY-207.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFY-207.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFY-207.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZFY-207.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:59:15 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf_ZIC PF18366.1 46 ZIC2-201 - 532 2e-25 88.6 1.3 1 3 8.9e-29 2e-25 88.6 1.3 2 46 250 295 248 295 0.97 Zic proteins zinc finger domain zf_ZIC PF18366.1 46 ZIC2-201 - 532 2e-25 88.6 1.3 2 3 0.053 1.2e+02 2.9 0.1 25 40 311 326 297 329 0.75 Zic proteins zinc finger domain zf_ZIC PF18366.1 46 ZIC2-201 - 532 2e-25 88.6 1.3 3 3 0.87 2e+03 -1.0 0.6 21 38 395 412 387 415 0.71 Zic proteins zinc finger domain zf-C2H2 PF00096.26 23 ZIC2-201 - 532 2.1e-21 75.1 31.7 1 5 0.00022 0.49 11.0 0.7 6 23 273 291 271 291 0.94 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZIC2-201 - 532 2.1e-21 75.1 31.7 2 5 1.1e-05 0.025 15.0 0.3 1 23 300 327 300 327 0.89 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZIC2-201 - 532 2.1e-21 75.1 31.7 3 5 4.9e-09 1.1e-05 25.6 0.2 1 23 333 357 333 357 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZIC2-201 - 532 2.1e-21 75.1 31.7 4 5 3.3e-06 0.0074 16.7 2.1 1 23 363 387 363 387 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZIC2-201 - 532 2.1e-21 75.1 31.7 5 5 1.3e-08 2.9e-05 24.3 3.9 1 23 393 415 393 415 0.96 Zinc finger, C2H2 type zf-H2C2_2 PF13465.6 26 ZIC2-201 - 532 1e-19 69.9 29.1 1 5 0.5 1.1e+03 0.3 0.5 19 26 272 279 271 279 0.86 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZIC2-201 - 532 1e-19 69.9 29.1 2 5 7.4e-11 1.7e-07 31.4 0.3 2 25 320 345 319 346 0.90 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZIC2-201 - 532 1e-19 69.9 29.1 3 5 1.5e-09 3.3e-06 27.3 0.7 1 26 349 376 349 376 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZIC2-201 - 532 1e-19 69.9 29.1 4 5 3.9e-07 0.00088 19.6 5.5 3 26 381 404 379 404 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZIC2-201 - 532 1e-19 69.9 29.1 5 5 0.011 24 5.6 0.1 1 10 407 416 407 421 0.88 Zinc-finger double domain # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZIC2-201.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZIC2-201.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZIC2-201.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZIC2-201.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZIC2-201.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:59:15 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZIC2-203.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZIC2-203.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZIC2-203.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZIC2-203.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZIC2-203.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:59:15 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZIC2-204.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZIC2-204.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZIC2-204.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZIC2-204.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZIC2-204.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:59:16 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZIC2-205.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZIC2-205.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZIC2-205.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZIC2-205.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZIC2-205.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:59:16 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZIK1-201 - 384 8.1e-69 225.2 56.0 1 11 3.2 3.2e+03 -1.1 0.0 10 17 16 26 10 28 0.72 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZIK1-201 - 384 8.1e-69 225.2 56.0 2 11 6.1 6e+03 -2.0 0.1 13 24 106 117 103 119 0.68 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZIK1-201 - 384 8.1e-69 225.2 56.0 3 11 1.2e-05 0.012 16.0 2.8 6 24 127 145 117 146 0.78 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZIK1-201 - 384 8.1e-69 225.2 56.0 4 11 5.8e-11 5.7e-08 32.8 0.1 1 25 150 174 150 175 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZIK1-201 - 384 8.1e-69 225.2 56.0 5 11 5.4e-11 5.4e-08 32.9 0.9 1 24 178 201 178 203 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZIK1-201 - 384 8.1e-69 225.2 56.0 6 11 2.3e-10 2.3e-07 30.9 0.1 1 25 206 230 206 231 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZIK1-201 - 384 8.1e-69 225.2 56.0 7 11 2.6e-10 2.6e-07 30.8 0.3 2 25 235 258 234 259 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZIK1-201 - 384 8.1e-69 225.2 56.0 8 11 2.5e-10 2.5e-07 30.8 0.1 2 25 263 286 262 287 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZIK1-201 - 384 8.1e-69 225.2 56.0 9 11 1.2e-10 1.2e-07 31.9 0.3 2 25 291 314 290 315 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZIK1-201 - 384 8.1e-69 225.2 56.0 10 11 5.1e-09 5.1e-06 26.7 0.1 3 25 320 342 319 343 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZIK1-201 - 384 8.1e-69 225.2 56.0 11 11 7.7e-09 7.7e-06 26.1 0.0 2 25 347 370 346 371 0.91 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZIK1-201 - 384 1.1e-51 170.4 62.4 1 10 3.9 3.9e+03 -1.3 0.1 5 14 112 121 111 122 0.78 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZIK1-201 - 384 1.1e-51 170.4 62.4 2 10 1.7e-08 1.7e-05 25.0 0.6 1 23 136 158 136 158 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZIK1-201 - 384 1.1e-51 170.4 62.4 3 10 6.2e-08 6.2e-05 23.2 1.5 2 23 165 186 164 186 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZIK1-201 - 384 1.1e-51 170.4 62.4 4 10 8.7e-08 8.6e-05 22.8 0.3 1 23 192 214 192 214 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZIK1-201 - 384 1.1e-51 170.4 62.4 5 10 1.9e-09 1.9e-06 28.0 0.7 1 23 220 242 220 242 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZIK1-201 - 384 1.1e-51 170.4 62.4 6 10 5.3e-06 0.0053 17.1 0.2 1 23 248 270 248 270 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZIK1-201 - 384 1.1e-51 170.4 62.4 7 10 1.7e-09 1.7e-06 28.2 0.4 1 23 276 298 276 298 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZIK1-201 - 384 1.1e-51 170.4 62.4 8 10 2.1e-08 2.1e-05 24.7 0.4 1 23 304 326 304 326 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZIK1-201 - 384 1.1e-51 170.4 62.4 9 10 2.3e-08 2.3e-05 24.6 0.1 1 23 332 354 332 354 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZIK1-201 - 384 1.1e-51 170.4 62.4 10 10 8.6e-05 0.086 13.3 7.1 1 21 360 380 360 382 0.95 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZIK1-201 - 384 3.8e-26 89.5 81.3 1 9 6.1e-06 0.006 17.3 0.7 1 23 136 158 136 159 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZIK1-201 - 384 3.8e-26 89.5 81.3 2 9 0.00015 0.15 13.0 1.3 2 23 165 186 164 187 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZIK1-201 - 384 3.8e-26 89.5 81.3 3 9 2.1e-05 0.021 15.6 0.4 1 23 192 214 192 215 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZIK1-201 - 384 3.8e-26 89.5 81.3 4 9 5.9e-07 0.00059 20.5 0.9 1 23 220 242 220 243 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZIK1-201 - 384 3.8e-26 89.5 81.3 5 9 4.9e-05 0.049 14.5 0.2 1 23 248 270 248 271 0.85 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZIK1-201 - 384 3.8e-26 89.5 81.3 6 9 9.9e-07 0.00099 19.8 0.4 1 23 276 298 276 299 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZIK1-201 - 384 3.8e-26 89.5 81.3 7 9 1.2e-05 0.012 16.4 0.3 1 23 304 326 304 327 0.88 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZIK1-201 - 384 3.8e-26 89.5 81.3 8 9 2.4e-06 0.0024 18.6 0.2 1 23 332 354 332 355 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZIK1-201 - 384 3.8e-26 89.5 81.3 9 9 0.0024 2.4 9.2 6.9 1 21 360 380 360 382 0.92 C2H2-type zinc finger Zn-ribbon_8 PF09723.10 40 ZIK1-201 - 384 4.9e-11 42.6 43.4 1 8 4.5e-05 0.045 13.9 0.9 6 34 136 171 135 180 0.92 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZIK1-201 - 384 4.9e-11 42.6 43.4 2 8 0.00018 0.18 11.9 4.0 6 35 192 228 191 232 0.90 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZIK1-201 - 384 4.9e-11 42.6 43.4 3 8 0.00015 0.15 12.2 4.3 6 34 220 255 219 259 0.91 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZIK1-201 - 384 4.9e-11 42.6 43.4 4 8 0.00014 0.14 12.3 3.5 6 35 248 284 247 289 0.88 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZIK1-201 - 384 4.9e-11 42.6 43.4 5 8 0.00038 0.38 10.9 3.7 6 34 276 311 275 311 0.93 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZIK1-201 - 384 4.9e-11 42.6 43.4 6 8 0.00014 0.14 12.3 3.4 6 35 304 340 303 344 0.86 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZIK1-201 - 384 4.9e-11 42.6 43.4 7 8 0.0063 6.2 7.0 0.5 6 16 332 342 331 353 0.85 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZIK1-201 - 384 4.9e-11 42.6 43.4 8 8 0.0056 5.6 7.2 2.7 6 30 360 379 359 384 0.72 Zinc ribbon domain zf_UBZ PF18439.1 32 ZIK1-201 - 384 6.3e-10 38.5 33.9 1 9 0.0079 7.9 6.2 0.1 3 12 136 145 134 155 0.80 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZIK1-201 - 384 6.3e-10 38.5 33.9 2 9 0.015 15 5.3 0.2 3 15 164 176 163 183 0.81 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZIK1-201 - 384 6.3e-10 38.5 33.9 3 9 0.0061 6.1 6.5 0.1 3 15 192 204 190 211 0.79 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZIK1-201 - 384 6.3e-10 38.5 33.9 4 9 0.0012 1.2 8.8 0.1 3 15 220 232 218 239 0.82 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZIK1-201 - 384 6.3e-10 38.5 33.9 5 9 0.0055 5.5 6.7 0.1 3 20 248 266 246 267 0.82 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZIK1-201 - 384 6.3e-10 38.5 33.9 6 9 0.0055 5.5 6.7 0.1 3 15 276 288 274 295 0.81 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZIK1-201 - 384 6.3e-10 38.5 33.9 7 9 0.0021 2.1 8.0 0.1 3 16 304 317 302 323 0.82 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZIK1-201 - 384 6.3e-10 38.5 33.9 8 9 0.0052 5.2 6.8 0.1 3 15 332 344 330 351 0.78 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZIK1-201 - 384 6.3e-10 38.5 33.9 9 9 0.083 82 2.9 0.9 3 14 360 371 358 379 0.84 Ubiquitin-Binding Zinc Finger zf-C2H2_6 PF13912.6 27 ZIK1-201 - 384 6.3e-09 35.6 73.1 1 9 0.00048 0.47 10.5 1.0 2 22 136 156 135 160 0.81 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZIK1-201 - 384 6.3e-09 35.6 73.1 2 9 0.0054 5.4 7.1 0.6 3 24 165 186 164 189 0.86 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZIK1-201 - 384 6.3e-09 35.6 73.1 3 9 0.00018 0.18 11.8 0.5 2 12 192 202 192 214 0.82 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZIK1-201 - 384 6.3e-09 35.6 73.1 4 9 7.8e-05 0.078 13.0 0.4 2 12 220 230 220 240 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZIK1-201 - 384 6.3e-09 35.6 73.1 5 9 0.0054 5.3 7.1 0.3 2 20 248 266 248 271 0.75 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZIK1-201 - 384 6.3e-09 35.6 73.1 6 9 0.0014 1.4 9.0 0.6 2 13 276 287 276 300 0.78 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZIK1-201 - 384 6.3e-09 35.6 73.1 7 9 0.037 37 4.5 0.3 2 12 304 314 304 327 0.77 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZIK1-201 - 384 6.3e-09 35.6 73.1 8 9 0.0018 1.8 8.6 0.4 2 12 332 342 332 350 0.88 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZIK1-201 - 384 6.3e-09 35.6 73.1 9 9 0.0012 1.2 9.2 8.8 2 24 360 382 360 384 0.97 C2H2-type zinc finger # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZIK1-201.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZIK1-201.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZIK1-201.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZIK1-201.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZIK1-201.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:59:16 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZIK1-202 - 474 1.9e-67 220.9 56.6 1 11 4.7 4.7e+03 -1.7 0.0 10 17 106 116 101 118 0.73 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZIK1-202 - 474 1.9e-67 220.9 56.6 2 11 7.7 7.7e+03 -2.3 0.1 14 24 197 207 193 209 0.68 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZIK1-202 - 474 1.9e-67 220.9 56.6 3 11 1.7e-05 0.017 15.5 2.9 7 24 218 235 207 236 0.78 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZIK1-202 - 474 1.9e-67 220.9 56.6 4 11 7.5e-11 7.4e-08 32.5 0.1 1 25 240 264 240 265 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZIK1-202 - 474 1.9e-67 220.9 56.6 5 11 7e-11 7e-08 32.6 0.9 1 24 268 291 268 293 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZIK1-202 - 474 1.9e-67 220.9 56.6 6 11 3e-10 3e-07 30.6 0.1 1 25 296 320 296 321 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZIK1-202 - 474 1.9e-67 220.9 56.6 7 11 3.4e-10 3.4e-07 30.4 0.3 2 25 325 348 324 349 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZIK1-202 - 474 1.9e-67 220.9 56.6 8 11 3.2e-10 3.2e-07 30.5 0.1 2 25 353 376 352 377 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZIK1-202 - 474 1.9e-67 220.9 56.6 9 11 1.5e-10 1.5e-07 31.5 0.3 2 25 381 404 380 405 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZIK1-202 - 474 1.9e-67 220.9 56.6 10 11 6.6e-09 6.6e-06 26.3 0.1 3 25 410 432 409 433 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZIK1-202 - 474 1.9e-67 220.9 56.6 11 11 1e-08 9.9e-06 25.8 0.0 2 25 437 460 436 461 0.91 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZIK1-202 - 474 2.2e-49 163.2 66.6 1 10 4.9 4.9e+03 -1.6 0.1 5 14 202 211 201 212 0.78 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZIK1-202 - 474 2.2e-49 163.2 66.6 2 10 2.1e-08 2.1e-05 24.7 0.6 1 23 226 248 226 248 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZIK1-202 - 474 2.2e-49 163.2 66.6 3 10 8e-08 8e-05 22.9 1.5 2 23 255 276 254 276 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZIK1-202 - 474 2.2e-49 163.2 66.6 4 10 1.1e-07 0.00011 22.4 0.3 1 23 282 304 282 304 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZIK1-202 - 474 2.2e-49 163.2 66.6 5 10 2.4e-09 2.4e-06 27.7 0.7 1 23 310 332 310 332 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZIK1-202 - 474 2.2e-49 163.2 66.6 6 10 6.9e-06 0.0069 16.8 0.2 1 23 338 360 338 360 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZIK1-202 - 474 2.2e-49 163.2 66.6 7 10 2.2e-09 2.2e-06 27.8 0.4 1 23 366 388 366 388 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZIK1-202 - 474 2.2e-49 163.2 66.6 8 10 2.7e-08 2.7e-05 24.4 0.4 1 23 394 416 394 416 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZIK1-202 - 474 2.2e-49 163.2 66.6 9 10 3e-08 3e-05 24.2 0.1 1 23 422 444 422 444 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZIK1-202 - 474 2.2e-49 163.2 66.6 10 10 0.00011 0.11 13.0 7.1 1 21 450 470 450 472 0.95 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZIK1-202 - 474 3e-24 83.6 84.4 1 9 7.9e-06 0.0079 17.0 0.7 1 23 226 248 226 249 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZIK1-202 - 474 3e-24 83.6 84.4 2 9 0.00019 0.19 12.6 1.3 2 23 255 276 254 277 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZIK1-202 - 474 3e-24 83.6 84.4 3 9 2.7e-05 0.027 15.3 0.4 1 23 282 304 282 305 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZIK1-202 - 474 3e-24 83.6 84.4 4 9 7.6e-07 0.00076 20.1 0.9 1 23 310 332 310 333 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZIK1-202 - 474 3e-24 83.6 84.4 5 9 6.4e-05 0.064 14.1 0.2 1 23 338 360 338 361 0.85 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZIK1-202 - 474 3e-24 83.6 84.4 6 9 1.3e-06 0.0013 19.4 0.4 1 23 366 388 366 389 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZIK1-202 - 474 3e-24 83.6 84.4 7 9 1.6e-05 0.016 16.0 0.3 1 23 394 416 394 417 0.88 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZIK1-202 - 474 3e-24 83.6 84.4 8 9 3.1e-06 0.0031 18.2 0.2 1 23 422 444 422 445 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZIK1-202 - 474 3e-24 83.6 84.4 9 9 0.0031 3.1 8.9 6.9 1 21 450 470 450 472 0.92 C2H2-type zinc finger KRAB PF01352.27 42 ZIK1-202 - 474 1.5e-21 75.7 0.2 1 1 4e-24 4e-21 74.4 0.2 1 42 13 54 13 54 0.98 KRAB box zf_UBZ PF18439.1 32 ZIK1-202 - 474 4.6e-09 35.7 33.9 1 9 0.01 10 5.8 0.1 3 12 226 235 224 245 0.80 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZIK1-202 - 474 4.6e-09 35.7 33.9 2 9 0.019 19 5.0 0.2 3 15 254 266 253 273 0.81 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZIK1-202 - 474 4.6e-09 35.7 33.9 3 9 0.0078 7.8 6.2 0.1 3 15 282 294 280 301 0.79 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZIK1-202 - 474 4.6e-09 35.7 33.9 4 9 0.0015 1.5 8.5 0.1 3 15 310 322 308 329 0.82 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZIK1-202 - 474 4.6e-09 35.7 33.9 5 9 0.007 7 6.3 0.1 3 20 338 356 336 357 0.82 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZIK1-202 - 474 4.6e-09 35.7 33.9 6 9 0.007 7 6.3 0.1 3 15 366 378 364 385 0.81 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZIK1-202 - 474 4.6e-09 35.7 33.9 7 9 0.0026 2.6 7.7 0.1 3 16 394 407 392 413 0.82 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZIK1-202 - 474 4.6e-09 35.7 33.9 8 9 0.0066 6.6 6.4 0.1 3 15 422 434 420 441 0.78 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZIK1-202 - 474 4.6e-09 35.7 33.9 9 9 0.11 1e+02 2.6 0.9 3 14 450 461 448 469 0.84 Ubiquitin-Binding Zinc Finger Zn-ribbon_8 PF09723.10 40 ZIK1-202 - 474 7.4e-09 35.6 48.6 1 8 8.3e-05 0.083 13.0 1.4 6 34 226 261 225 268 0.92 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZIK1-202 - 474 7.4e-09 35.6 48.6 2 8 0.00017 0.17 12.0 3.7 6 35 282 318 281 323 0.89 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZIK1-202 - 474 7.4e-09 35.6 48.6 3 8 0.00021 0.21 11.7 4.4 6 34 310 345 309 349 0.91 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZIK1-202 - 474 7.4e-09 35.6 48.6 4 8 0.00018 0.18 12.0 3.5 6 35 338 374 337 379 0.87 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZIK1-202 - 474 7.4e-09 35.6 48.6 5 8 0.00026 0.26 11.5 3.8 6 34 366 401 364 405 0.91 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZIK1-202 - 474 7.4e-09 35.6 48.6 6 8 0.00014 0.14 12.3 3.0 6 35 394 430 393 434 0.86 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZIK1-202 - 474 7.4e-09 35.6 48.6 7 8 0.0081 8 6.7 0.5 6 16 422 432 421 443 0.85 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZIK1-202 - 474 7.4e-09 35.6 48.6 8 8 0.0072 7.2 6.8 2.7 6 30 450 469 449 474 0.72 Zinc ribbon domain zf-C2H2_6 PF13912.6 27 ZIK1-202 - 474 9e-08 31.9 73.5 1 9 0.00061 0.61 10.2 0.9 2 21 226 245 225 250 0.81 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZIK1-202 - 474 9e-08 31.9 73.5 2 9 0.0069 6.9 6.8 0.6 3 24 255 276 254 279 0.86 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZIK1-202 - 474 9e-08 31.9 73.5 3 9 0.00023 0.23 11.5 0.5 2 12 282 292 282 304 0.82 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZIK1-202 - 474 9e-08 31.9 73.5 4 9 9.9e-05 0.099 12.7 0.4 2 12 310 320 310 330 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZIK1-202 - 474 9e-08 31.9 73.5 5 9 0.0069 6.8 6.8 0.3 2 20 338 356 338 361 0.75 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZIK1-202 - 474 9e-08 31.9 73.5 6 9 0.0017 1.7 8.7 0.6 2 13 366 377 366 390 0.78 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZIK1-202 - 474 9e-08 31.9 73.5 7 9 0.048 48 4.1 0.3 2 12 394 404 394 417 0.77 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZIK1-202 - 474 9e-08 31.9 73.5 8 9 0.0023 2.3 8.3 0.4 2 12 422 432 422 440 0.88 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZIK1-202 - 474 9e-08 31.9 73.5 9 9 0.0015 1.5 8.9 8.8 2 24 450 472 450 474 0.97 C2H2-type zinc finger # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZIK1-202.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZIK1-202.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZIK1-202.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZIK1-202.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZIK1-202.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:59:17 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZIK1-203.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZIK1-203.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZIK1-203.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZIK1-203.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZIK1-203.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:59:17 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZIK1-204 - 487 2.5e-67 220.5 56.5 1 10 4.8 4.8e+03 -1.7 0.0 10 17 119 129 114 131 0.73 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZIK1-204 - 487 2.5e-67 220.5 56.5 2 10 8.6e-05 0.085 13.3 5.1 7 24 231 248 208 249 0.83 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZIK1-204 - 487 2.5e-67 220.5 56.5 3 10 7.7e-11 7.7e-08 32.4 0.1 1 25 253 277 253 278 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZIK1-204 - 487 2.5e-67 220.5 56.5 4 10 7.2e-11 7.2e-08 32.5 0.9 1 24 281 304 281 306 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZIK1-204 - 487 2.5e-67 220.5 56.5 5 10 3.1e-10 3.1e-07 30.5 0.1 1 25 309 333 309 334 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZIK1-204 - 487 2.5e-67 220.5 56.5 6 10 3.5e-10 3.5e-07 30.4 0.3 2 25 338 361 337 362 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZIK1-204 - 487 2.5e-67 220.5 56.5 7 10 3.3e-10 3.3e-07 30.4 0.1 2 25 366 389 365 390 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZIK1-204 - 487 2.5e-67 220.5 56.5 8 10 1.5e-10 1.5e-07 31.5 0.3 2 25 394 417 393 418 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZIK1-204 - 487 2.5e-67 220.5 56.5 9 10 6.8e-09 6.8e-06 26.3 0.1 3 25 423 445 422 446 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZIK1-204 - 487 2.5e-67 220.5 56.5 10 10 1e-08 1e-05 25.7 0.0 2 25 450 473 449 474 0.91 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZIK1-204 - 487 3e-49 162.8 66.6 1 10 5.1 5.1e+03 -1.7 0.1 5 14 215 224 214 225 0.78 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZIK1-204 - 487 3e-49 162.8 66.6 2 10 2.2e-08 2.2e-05 24.6 0.6 1 23 239 261 239 261 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZIK1-204 - 487 3e-49 162.8 66.6 3 10 8.3e-08 8.2e-05 22.8 1.5 2 23 268 289 267 289 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZIK1-204 - 487 3e-49 162.8 66.6 4 10 1.2e-07 0.00012 22.4 0.3 1 23 295 317 295 317 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZIK1-204 - 487 3e-49 162.8 66.6 5 10 2.5e-09 2.5e-06 27.6 0.7 1 23 323 345 323 345 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZIK1-204 - 487 3e-49 162.8 66.6 6 10 7.1e-06 0.0071 16.7 0.2 1 23 351 373 351 373 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZIK1-204 - 487 3e-49 162.8 66.6 7 10 2.2e-09 2.2e-06 27.8 0.4 1 23 379 401 379 401 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZIK1-204 - 487 3e-49 162.8 66.6 8 10 2.8e-08 2.7e-05 24.3 0.4 1 23 407 429 407 429 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZIK1-204 - 487 3e-49 162.8 66.6 9 10 3.1e-08 3.1e-05 24.2 0.1 1 23 435 457 435 457 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZIK1-204 - 487 3e-49 162.8 66.6 10 10 0.00012 0.11 12.9 7.1 1 21 463 483 463 485 0.95 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZIK1-204 - 487 4.1e-24 83.2 84.4 1 9 8.1e-06 0.0081 16.9 0.7 1 23 239 261 239 262 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZIK1-204 - 487 4.1e-24 83.2 84.4 2 9 0.0002 0.2 12.6 1.3 2 23 268 289 267 290 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZIK1-204 - 487 4.1e-24 83.2 84.4 3 9 2.8e-05 0.028 15.2 0.4 1 23 295 317 295 318 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZIK1-204 - 487 4.1e-24 83.2 84.4 4 9 7.9e-07 0.00079 20.1 0.9 1 23 323 345 323 346 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZIK1-204 - 487 4.1e-24 83.2 84.4 5 9 6.6e-05 0.066 14.1 0.2 1 23 351 373 351 374 0.85 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZIK1-204 - 487 4.1e-24 83.2 84.4 6 9 1.3e-06 0.0013 19.4 0.4 1 23 379 401 379 402 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZIK1-204 - 487 4.1e-24 83.2 84.4 7 9 1.6e-05 0.016 16.0 0.3 1 23 407 429 407 430 0.88 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZIK1-204 - 487 4.1e-24 83.2 84.4 8 9 3.3e-06 0.0032 18.2 0.2 1 23 435 457 435 458 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZIK1-204 - 487 4.1e-24 83.2 84.4 9 9 0.0032 3.2 8.8 6.9 1 21 463 483 463 485 0.92 C2H2-type zinc finger KRAB PF01352.27 42 ZIK1-204 - 487 1.6e-21 75.7 0.2 1 1 4.2e-24 4.2e-21 74.3 0.2 1 42 26 67 26 67 0.98 KRAB box zf_UBZ PF18439.1 32 ZIK1-204 - 487 6e-09 35.3 33.9 1 9 0.01 10 5.8 0.1 3 12 239 248 237 258 0.80 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZIK1-204 - 487 6e-09 35.3 33.9 2 9 0.019 19 4.9 0.2 3 15 267 279 266 286 0.81 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZIK1-204 - 487 6e-09 35.3 33.9 3 9 0.0081 8 6.1 0.1 3 15 295 307 293 314 0.79 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZIK1-204 - 487 6e-09 35.3 33.9 4 9 0.0016 1.6 8.4 0.1 3 15 323 335 321 342 0.82 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZIK1-204 - 487 6e-09 35.3 33.9 5 9 0.0073 7.2 6.3 0.1 3 20 351 369 349 370 0.82 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZIK1-204 - 487 6e-09 35.3 33.9 6 9 0.0073 7.2 6.3 0.1 3 15 379 391 377 398 0.81 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZIK1-204 - 487 6e-09 35.3 33.9 7 9 0.0027 2.7 7.7 0.1 3 16 407 420 405 426 0.82 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZIK1-204 - 487 6e-09 35.3 33.9 8 9 0.0069 6.8 6.4 0.1 3 15 435 447 433 454 0.78 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZIK1-204 - 487 6e-09 35.3 33.9 9 9 0.11 1.1e+02 2.5 0.9 3 14 463 474 461 482 0.84 Ubiquitin-Binding Zinc Finger Zn-ribbon_8 PF09723.10 40 ZIK1-204 - 487 1.6e-08 34.6 49.2 1 8 8.6e-05 0.086 13.0 1.4 6 34 239 274 238 281 0.92 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZIK1-204 - 487 1.6e-08 34.6 49.2 2 8 0.00021 0.21 11.7 4.0 6 35 295 331 294 336 0.89 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZIK1-204 - 487 1.6e-08 34.6 49.2 3 8 0.00023 0.23 11.6 4.5 6 34 323 358 322 362 0.91 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZIK1-204 - 487 1.6e-08 34.6 49.2 4 8 0.0002 0.2 11.8 3.6 6 35 351 387 350 392 0.87 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZIK1-204 - 487 1.6e-08 34.6 49.2 5 8 0.00029 0.29 11.3 3.9 6 34 379 414 378 418 0.91 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZIK1-204 - 487 1.6e-08 34.6 49.2 6 8 0.00023 0.23 11.6 3.4 6 34 407 442 406 446 0.87 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZIK1-204 - 487 1.6e-08 34.6 49.2 7 8 0.0081 8.1 6.7 0.5 6 16 435 445 433 456 0.85 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZIK1-204 - 487 1.6e-08 34.6 49.2 8 8 0.0074 7.4 6.8 2.7 6 30 463 482 462 487 0.72 Zinc ribbon domain zf-C2H2_6 PF13912.6 27 ZIK1-204 - 487 6.1e-08 32.5 72.6 1 9 0.00063 0.63 10.1 0.9 2 21 239 258 238 263 0.81 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZIK1-204 - 487 6.1e-08 32.5 72.6 2 9 0.0072 7.1 6.7 0.6 3 24 268 289 267 292 0.86 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZIK1-204 - 487 6.1e-08 32.5 72.6 3 9 0.00024 0.24 11.5 0.5 2 12 295 305 295 317 0.82 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZIK1-204 - 487 6.1e-08 32.5 72.6 4 9 0.0001 0.1 12.6 0.4 2 12 323 333 323 343 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZIK1-204 - 487 6.1e-08 32.5 72.6 5 9 0.0071 7.1 6.8 0.3 2 20 351 369 351 374 0.75 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZIK1-204 - 487 6.1e-08 32.5 72.6 6 9 0.0018 1.8 8.7 0.6 2 13 379 390 379 403 0.78 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZIK1-204 - 487 6.1e-08 32.5 72.6 7 9 0.049 49 4.1 0.3 2 12 407 417 407 430 0.77 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZIK1-204 - 487 6.1e-08 32.5 72.6 8 9 0.0024 2.4 8.3 0.4 2 12 435 445 435 453 0.88 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZIK1-204 - 487 6.1e-08 32.5 72.6 9 9 0.0016 1.6 8.8 8.8 2 24 463 485 463 487 0.97 C2H2-type zinc finger # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZIK1-204.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZIK1-204.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZIK1-204.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZIK1-204.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZIK1-204.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:59:18 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZIK1-205.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZIK1-205.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZIK1-205.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZIK1-205.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZIK1-205.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:59:18 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZIK1-206.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZIK1-206.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZIK1-206.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZIK1-206.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZIK1-206.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:59:18 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZIK1-207 - 432 4.8e-68 222.8 56.3 1 11 4 4.2e+03 -1.5 0.0 10 17 64 74 59 76 0.73 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZIK1-207 - 432 4.8e-68 222.8 56.3 2 11 6.5 6.9e+03 -2.2 0.1 13 24 154 165 151 167 0.68 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZIK1-207 - 432 4.8e-68 222.8 56.3 3 11 1.3e-05 0.014 15.8 2.8 7 24 176 193 165 194 0.78 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZIK1-207 - 432 4.8e-68 222.8 56.3 4 11 6.3e-11 6.6e-08 32.6 0.1 1 25 198 222 198 223 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZIK1-207 - 432 4.8e-68 222.8 56.3 5 11 5.9e-11 6.2e-08 32.7 0.9 1 24 226 249 226 251 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZIK1-207 - 432 4.8e-68 222.8 56.3 6 11 2.5e-10 2.7e-07 30.7 0.1 1 25 254 278 254 279 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZIK1-207 - 432 4.8e-68 222.8 56.3 7 11 2.9e-10 3e-07 30.6 0.3 2 25 283 306 282 307 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZIK1-207 - 432 4.8e-68 222.8 56.3 8 11 2.7e-10 2.9e-07 30.6 0.1 2 25 311 334 310 335 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZIK1-207 - 432 4.8e-68 222.8 56.3 9 11 1.3e-10 1.3e-07 31.7 0.3 2 25 339 362 338 363 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZIK1-207 - 432 4.8e-68 222.8 56.3 10 11 5.6e-09 5.9e-06 26.5 0.1 3 25 368 390 367 391 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZIK1-207 - 432 4.8e-68 222.8 56.3 11 11 8.4e-09 8.9e-06 25.9 0.0 2 25 395 418 394 419 0.91 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZIK1-207 - 432 7.1e-50 164.8 66.6 1 10 4.2 4.4e+03 -1.5 0.1 5 14 160 169 159 170 0.78 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZIK1-207 - 432 7.1e-50 164.8 66.6 2 10 1.8e-08 1.9e-05 24.8 0.6 1 23 184 206 184 206 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZIK1-207 - 432 7.1e-50 164.8 66.6 3 10 6.8e-08 7.1e-05 23.0 1.5 2 23 213 234 212 234 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZIK1-207 - 432 7.1e-50 164.8 66.6 4 10 9.5e-08 0.0001 22.6 0.3 1 23 240 262 240 262 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZIK1-207 - 432 7.1e-50 164.8 66.6 5 10 2e-09 2.1e-06 27.8 0.7 1 23 268 290 268 290 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZIK1-207 - 432 7.1e-50 164.8 66.6 6 10 5.8e-06 0.0062 16.9 0.2 1 23 296 318 296 318 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZIK1-207 - 432 7.1e-50 164.8 66.6 7 10 1.8e-09 1.9e-06 28.0 0.4 1 23 324 346 324 346 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZIK1-207 - 432 7.1e-50 164.8 66.6 8 10 2.3e-08 2.4e-05 24.5 0.4 1 23 352 374 352 374 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZIK1-207 - 432 7.1e-50 164.8 66.6 9 10 2.6e-08 2.7e-05 24.4 0.1 1 23 380 402 380 402 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZIK1-207 - 432 7.1e-50 164.8 66.6 10 10 9.4e-05 0.099 13.1 7.1 1 21 408 428 408 430 0.95 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZIK1-207 - 432 9.1e-25 85.2 84.4 1 9 6.6e-06 0.007 17.1 0.7 1 23 184 206 184 207 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZIK1-207 - 432 9.1e-25 85.2 84.4 2 9 0.00016 0.17 12.8 1.3 2 23 213 234 212 235 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZIK1-207 - 432 9.1e-25 85.2 84.4 3 9 2.3e-05 0.024 15.4 0.4 1 23 240 262 240 263 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZIK1-207 - 432 9.1e-25 85.2 84.4 4 9 6.4e-07 0.00068 20.3 0.9 1 23 268 290 268 291 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZIK1-207 - 432 9.1e-25 85.2 84.4 5 9 5.4e-05 0.057 14.3 0.2 1 23 296 318 296 319 0.85 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZIK1-207 - 432 9.1e-25 85.2 84.4 6 9 1.1e-06 0.0011 19.6 0.4 1 23 324 346 324 347 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZIK1-207 - 432 9.1e-25 85.2 84.4 7 9 1.3e-05 0.014 16.2 0.3 1 23 352 374 352 375 0.88 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZIK1-207 - 432 9.1e-25 85.2 84.4 8 9 2.7e-06 0.0028 18.4 0.2 1 23 380 402 380 403 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZIK1-207 - 432 9.1e-25 85.2 84.4 9 9 0.0026 2.7 9.0 6.9 1 21 408 428 408 430 0.92 C2H2-type zinc finger zf_UBZ PF18439.1 32 ZIK1-207 - 432 1.7e-09 37.1 33.9 1 9 0.0086 9 6.0 0.1 3 12 184 193 182 203 0.80 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZIK1-207 - 432 1.7e-09 37.1 33.9 2 9 0.016 17 5.1 0.2 3 15 212 224 211 231 0.81 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZIK1-207 - 432 1.7e-09 37.1 33.9 3 9 0.0066 7 6.3 0.1 3 15 240 252 238 259 0.79 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZIK1-207 - 432 1.7e-09 37.1 33.9 4 9 0.0013 1.4 8.6 0.1 3 15 268 280 266 287 0.82 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZIK1-207 - 432 1.7e-09 37.1 33.9 5 9 0.006 6.3 6.5 0.1 3 20 296 314 294 315 0.82 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZIK1-207 - 432 1.7e-09 37.1 33.9 6 9 0.006 6.3 6.5 0.1 3 15 324 336 322 343 0.81 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZIK1-207 - 432 1.7e-09 37.1 33.9 7 9 0.0022 2.4 7.9 0.1 3 16 352 365 350 371 0.82 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZIK1-207 - 432 1.7e-09 37.1 33.9 8 9 0.0056 5.9 6.6 0.1 3 15 380 392 378 399 0.78 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZIK1-207 - 432 1.7e-09 37.1 33.9 9 9 0.09 94 2.7 0.9 3 14 408 419 406 427 0.84 Ubiquitin-Binding Zinc Finger Zn-ribbon_8 PF09723.10 40 ZIK1-207 - 432 2.1e-09 37.3 48.0 1 8 5.4e-05 0.057 13.6 1.0 6 34 184 219 183 227 0.92 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZIK1-207 - 432 2.1e-09 37.3 48.0 2 8 0.00021 0.22 11.7 4.1 6 35 240 276 239 280 0.90 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZIK1-207 - 432 2.1e-09 37.3 48.0 3 8 0.00015 0.16 12.1 4.2 6 34 268 303 267 307 0.91 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZIK1-207 - 432 2.1e-09 37.3 48.0 4 8 0.00013 0.14 12.3 3.3 6 35 296 332 294 337 0.88 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZIK1-207 - 432 2.1e-09 37.3 48.0 5 8 0.00025 0.26 11.4 4.0 6 34 324 359 322 363 0.91 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZIK1-207 - 432 2.1e-09 37.3 48.0 6 8 0.00013 0.14 12.3 3.1 6 35 352 388 351 392 0.86 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZIK1-207 - 432 2.1e-09 37.3 48.0 7 8 0.0071 7.5 6.8 0.5 6 16 380 390 379 400 0.85 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZIK1-207 - 432 2.1e-09 37.3 48.0 8 8 0.0061 6.4 7.0 2.7 6 30 408 427 407 432 0.72 Zinc ribbon domain zf-C2H2_6 PF13912.6 27 ZIK1-207 - 432 2.3e-08 33.8 73.0 1 9 0.00052 0.54 10.3 1.0 2 21 184 203 183 208 0.81 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZIK1-207 - 432 2.3e-08 33.8 73.0 2 9 0.0059 6.2 6.9 0.6 3 24 213 234 212 237 0.86 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZIK1-207 - 432 2.3e-08 33.8 73.0 3 9 0.0002 0.21 11.6 0.5 2 12 240 250 240 262 0.82 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZIK1-207 - 432 2.3e-08 33.8 73.0 4 9 8.4e-05 0.089 12.8 0.4 2 12 268 278 268 288 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZIK1-207 - 432 2.3e-08 33.8 73.0 5 9 0.0058 6.1 7.0 0.3 2 20 296 314 296 319 0.75 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZIK1-207 - 432 2.3e-08 33.8 73.0 6 9 0.0015 1.6 8.9 0.6 2 13 324 335 324 348 0.78 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZIK1-207 - 432 2.3e-08 33.8 73.0 7 9 0.041 43 4.3 0.3 2 12 352 362 352 375 0.77 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZIK1-207 - 432 2.3e-08 33.8 73.0 8 9 0.002 2.1 8.5 0.4 2 12 380 390 380 398 0.88 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZIK1-207 - 432 2.3e-08 33.8 73.0 9 9 0.0013 1.4 9.0 8.8 2 24 408 430 408 432 0.97 C2H2-type zinc finger # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZIK1-207.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZIK1-207.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZIK1-207.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZIK1-207.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZIK1-207.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:59:19 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZIK1-208.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZIK1-208.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZIK1-208.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZIK1-208.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZIK1-208.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:59:19 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZIM3-201 - 472 2.9e-65 214.0 77.3 1 12 0.059 66 4.2 0.1 15 25 167 177 157 178 0.79 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZIM3-201 - 472 2.9e-65 214.0 77.3 2 12 5.3e-06 0.0059 17.0 2.3 2 25 182 205 181 206 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZIM3-201 - 472 2.9e-65 214.0 77.3 3 12 3.4e-07 0.00039 20.7 1.3 2 26 210 234 209 234 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZIM3-201 - 472 2.9e-65 214.0 77.3 4 12 2.9e-10 3.2e-07 30.5 2.3 1 25 237 261 237 261 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZIM3-201 - 472 2.9e-65 214.0 77.3 5 12 4.9e-06 0.0055 17.1 1.0 5 25 269 289 267 290 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZIM3-201 - 472 2.9e-65 214.0 77.3 6 12 2.9e-10 3.3e-07 30.4 0.4 3 24 295 316 294 318 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZIM3-201 - 472 2.9e-65 214.0 77.3 7 12 2e-12 2.2e-09 37.3 0.3 1 25 321 345 321 346 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZIM3-201 - 472 2.9e-65 214.0 77.3 8 12 7.3e-08 8.1e-05 22.9 0.0 5 24 353 372 349 374 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZIM3-201 - 472 2.9e-65 214.0 77.3 9 12 3.3e-10 3.7e-07 30.3 0.6 1 24 377 400 377 402 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZIM3-201 - 472 2.9e-65 214.0 77.3 10 12 5.3e-08 5.9e-05 23.3 1.7 2 24 406 428 405 430 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZIM3-201 - 472 2.9e-65 214.0 77.3 11 12 5.1e-10 5.7e-07 29.7 0.3 1 25 433 457 433 458 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZIM3-201 - 472 2.9e-65 214.0 77.3 12 12 1.6 1.8e+03 -0.3 0.5 2 9 462 470 461 471 0.75 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZIM3-201 - 472 3.6e-51 168.8 82.2 1 11 1.5e-05 0.016 15.6 2.6 2 23 168 189 167 189 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZIM3-201 - 472 3.6e-51 168.8 82.2 2 11 1.5e-05 0.017 15.6 1.3 1 23 195 217 195 217 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZIM3-201 - 472 3.6e-51 168.8 82.2 3 11 1.8e-07 0.0002 21.6 1.5 1 23 223 245 223 245 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZIM3-201 - 472 3.6e-51 168.8 82.2 4 11 0.00071 0.8 10.3 2.0 1 23 251 273 251 273 0.88 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZIM3-201 - 472 3.6e-51 168.8 82.2 5 11 5.2e-08 5.8e-05 23.3 1.2 1 23 279 301 279 301 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZIM3-201 - 472 3.6e-51 168.8 82.2 6 11 7.4e-10 8.3e-07 29.1 0.4 1 23 307 329 307 329 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZIM3-201 - 472 3.6e-51 168.8 82.2 7 11 5.1e-07 0.00057 20.2 0.3 1 23 335 357 335 357 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZIM3-201 - 472 3.6e-51 168.8 82.2 8 11 2.6e-06 0.0029 18.0 0.3 1 23 363 385 363 385 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZIM3-201 - 472 3.6e-51 168.8 82.2 9 11 8.1e-08 9.1e-05 22.7 3.6 1 23 391 413 391 413 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZIM3-201 - 472 3.6e-51 168.8 82.2 10 11 2.4e-07 0.00027 21.2 1.8 1 23 419 441 419 441 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZIM3-201 - 472 3.6e-51 168.8 82.2 11 11 6.8e-08 7.6e-05 23.0 0.2 3 23 449 470 447 470 0.97 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZIM3-201 - 472 9.3e-35 116.3 77.1 1 11 5.2e-06 0.0058 17.4 1.6 2 23 168 189 167 190 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZIM3-201 - 472 9.3e-35 116.3 77.1 2 11 1.8e-05 0.02 15.7 1.1 1 23 195 217 195 218 0.97 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZIM3-201 - 472 9.3e-35 116.3 77.1 3 11 6.7e-05 0.075 13.9 1.0 1 23 223 245 223 246 0.97 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZIM3-201 - 472 9.3e-35 116.3 77.1 4 11 0.0033 3.7 8.7 1.9 1 23 251 273 251 274 0.89 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZIM3-201 - 472 9.3e-35 116.3 77.1 5 11 1.4e-05 0.016 16.0 1.1 1 23 279 301 279 302 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZIM3-201 - 472 9.3e-35 116.3 77.1 6 11 1.2e-05 0.013 16.3 0.4 1 23 307 329 307 330 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZIM3-201 - 472 9.3e-35 116.3 77.1 7 11 1.1e-05 0.013 16.3 0.3 1 23 335 357 335 358 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZIM3-201 - 472 9.3e-35 116.3 77.1 8 11 1.2e-05 0.013 16.3 0.2 1 23 363 385 363 386 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZIM3-201 - 472 9.3e-35 116.3 77.1 9 11 3.7e-05 0.042 14.7 3.0 1 23 391 413 391 414 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZIM3-201 - 472 9.3e-35 116.3 77.1 10 11 1.8e-05 0.021 15.7 1.2 1 23 419 441 419 442 0.97 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZIM3-201 - 472 9.3e-35 116.3 77.1 11 11 2.1e-05 0.023 15.5 0.2 2 24 448 470 447 470 0.94 C2H2-type zinc finger KRAB PF01352.27 42 ZIM3-201 - 472 2.9e-25 87.7 0.5 1 1 6.2e-28 6.9e-25 86.4 0.5 2 42 8 48 7 48 0.99 KRAB box Zn-ribbon_8 PF09723.10 40 ZIM3-201 - 472 4e-08 33.2 52.9 1 8 0.35 4e+02 1.2 4.0 7 33 168 201 166 202 0.61 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZIM3-201 - 472 4e-08 33.2 52.9 2 8 0.00065 0.72 10.0 5.1 6 36 195 232 194 235 0.85 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZIM3-201 - 472 4e-08 33.2 52.9 3 8 5.8e-06 0.0064 16.6 3.2 6 34 223 258 222 263 0.90 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZIM3-201 - 472 4e-08 33.2 52.9 4 8 0.016 17 5.6 5.2 6 34 279 314 277 316 0.76 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZIM3-201 - 472 4e-08 33.2 52.9 5 8 0.0006 0.67 10.1 1.3 6 35 307 343 306 348 0.89 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZIM3-201 - 472 4e-08 33.2 52.9 6 8 0.0014 1.5 9.0 4.0 6 34 363 398 362 403 0.83 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZIM3-201 - 472 4e-08 33.2 52.9 7 8 0.012 14 5.9 0.6 6 16 391 401 390 413 0.81 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZIM3-201 - 472 4e-08 33.2 52.9 8 8 1.6e-05 0.018 15.1 1.2 6 35 419 455 418 460 0.86 Zinc ribbon domain zf-C2H2_6 PF13912.6 27 ZIM3-201 - 472 2.8e-07 30.4 82.5 1 11 0.031 34 4.6 2.1 3 24 168 189 168 190 0.95 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZIM3-201 - 472 2.8e-07 30.4 82.5 2 11 0.017 19 5.4 1.3 2 20 195 213 195 220 0.73 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZIM3-201 - 472 2.8e-07 30.4 82.5 3 11 1.3 1.5e+03 -0.6 3.0 2 26 223 247 223 248 0.88 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZIM3-201 - 472 2.8e-07 30.4 82.5 4 11 0.0038 4.2 7.5 0.8 2 12 251 261 251 261 0.92 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZIM3-201 - 472 2.8e-07 30.4 82.5 5 11 0.00019 0.21 11.6 1.5 2 24 279 301 278 304 0.90 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZIM3-201 - 472 2.8e-07 30.4 82.5 6 11 0.092 1e+02 3.1 0.4 2 13 307 318 307 330 0.75 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZIM3-201 - 472 2.8e-07 30.4 82.5 7 11 0.004 4.5 7.4 0.9 2 12 335 345 335 346 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZIM3-201 - 472 2.8e-07 30.4 82.5 8 11 7.9e-06 0.0088 16.0 0.2 1 24 362 385 362 388 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZIM3-201 - 472 2.8e-07 30.4 82.5 9 11 0.075 84 3.3 4.2 2 25 391 414 391 416 0.89 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZIM3-201 - 472 2.8e-07 30.4 82.5 10 11 2.1e-05 0.024 14.6 1.4 2 24 419 441 418 444 0.92 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZIM3-201 - 472 2.8e-07 30.4 82.5 11 11 0.0047 5.3 7.2 0.2 2 11 447 456 447 457 0.90 C2H2-type zinc finger # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZIM3-201.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZIM3-201.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZIM3-201.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZIM3-201.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZIM3-201.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:59:20 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZKSCAN1-201 - 563 1.1e-47 158.4 34.5 1 6 0.0072 4.8 7.8 2.1 10 26 372 388 372 388 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZKSCAN1-201 - 563 1.1e-47 158.4 34.5 2 6 1.4e-11 9.6e-09 35.3 0.2 2 25 392 415 391 415 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZKSCAN1-201 - 563 1.1e-47 158.4 34.5 3 6 1.5e-11 9.7e-09 35.3 1.1 1 26 419 444 419 444 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZKSCAN1-201 - 563 1.1e-47 158.4 34.5 4 6 2.3e-10 1.5e-07 31.5 0.1 1 25 447 471 447 472 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZKSCAN1-201 - 563 1.1e-47 158.4 34.5 5 6 5.6e-13 3.7e-10 39.8 0.4 1 25 475 499 475 500 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZKSCAN1-201 - 563 1.1e-47 158.4 34.5 6 6 1.3e-09 8.4e-07 29.1 1.9 4 26 506 528 503 528 0.91 Zinc-finger double domain SCAN PF02023.17 90 ZKSCAN1-201 - 563 9.8e-41 137.5 1.6 1 1 2.9e-43 1.9e-40 136.6 1.6 1 87 52 138 52 141 0.97 SCAN domain zf-C2H2 PF00096.26 23 ZKSCAN1-201 - 563 3e-37 125.0 46.7 1 6 1.5e-07 9.8e-05 22.6 3.9 1 23 377 399 377 399 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZKSCAN1-201 - 563 3e-37 125.0 46.7 2 6 4.3e-08 2.9e-05 24.3 0.1 1 23 405 427 405 427 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZKSCAN1-201 - 563 3e-37 125.0 46.7 3 6 1.5e-08 1e-05 25.7 1.7 1 23 433 455 433 455 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZKSCAN1-201 - 563 3e-37 125.0 46.7 4 6 4.7e-10 3.1e-07 30.5 0.4 1 23 461 483 461 483 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZKSCAN1-201 - 563 3e-37 125.0 46.7 5 6 2.4e-08 1.6e-05 25.1 0.4 1 23 489 511 489 511 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZKSCAN1-201 - 563 3e-37 125.0 46.7 6 6 3.8e-08 2.5e-05 24.5 3.7 1 23 517 539 517 539 0.99 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZKSCAN1-201 - 563 2e-15 56.2 38.4 1 6 0.00012 0.078 13.9 3.0 1 23 377 399 377 400 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZKSCAN1-201 - 563 2e-15 56.2 38.4 2 6 0.00043 0.29 12.1 0.2 1 23 405 427 405 428 0.90 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZKSCAN1-201 - 563 2e-15 56.2 38.4 3 6 0.0022 1.4 9.9 1.6 1 23 433 455 433 456 0.90 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZKSCAN1-201 - 563 2e-15 56.2 38.4 4 6 1.1e-05 0.0076 17.0 0.4 1 23 461 483 461 484 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZKSCAN1-201 - 563 2e-15 56.2 38.4 5 6 0.00026 0.17 12.8 0.3 1 23 489 511 489 512 0.90 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZKSCAN1-201 - 563 2e-15 56.2 38.4 6 6 0.00017 0.11 13.3 1.7 1 23 517 539 517 540 0.86 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZKSCAN1-201 - 563 7.1e-12 45.0 35.1 1 6 7.6e-05 0.05 13.6 1.7 2 24 377 399 376 402 0.92 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZKSCAN1-201 - 563 7.1e-12 45.0 35.1 2 6 0.00081 0.54 10.3 0.4 2 12 405 415 405 416 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZKSCAN1-201 - 563 7.1e-12 45.0 35.1 3 6 0.00062 0.41 10.7 1.1 2 20 433 451 433 458 0.78 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZKSCAN1-201 - 563 7.1e-12 45.0 35.1 4 6 0.00014 0.094 12.7 0.6 2 24 461 483 461 486 0.88 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZKSCAN1-201 - 563 7.1e-12 45.0 35.1 5 6 0.00021 0.14 12.2 0.2 2 14 489 501 489 514 0.76 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZKSCAN1-201 - 563 7.1e-12 45.0 35.1 6 6 0.0074 4.9 7.3 0.5 2 12 517 527 517 537 0.92 C2H2-type zinc finger KRAB PF01352.27 42 ZKSCAN1-201 - 563 1.3e-08 34.3 0.0 1 1 3.9e-11 2.6e-08 33.4 0.0 2 37 227 262 226 266 0.95 KRAB box Zn-ribbon_8 PF09723.10 40 ZKSCAN1-201 - 563 3.5e-08 33.4 25.2 1 5 0.079 53 4.1 0.4 7 19 378 390 376 400 0.80 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZKSCAN1-201 - 563 3.5e-08 33.4 25.2 2 5 5.6e-06 0.0037 17.3 1.4 6 34 405 440 404 444 0.90 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZKSCAN1-201 - 563 3.5e-08 33.4 25.2 3 5 2.1e-05 0.014 15.5 4.8 6 38 461 500 460 502 0.92 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZKSCAN1-201 - 563 3.5e-08 33.4 25.2 4 5 3.2e-05 0.021 14.9 4.0 6 38 489 528 488 529 0.85 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZKSCAN1-201 - 563 3.5e-08 33.4 25.2 5 5 0.0035 2.3 8.4 0.2 6 17 517 528 516 537 0.86 Zinc ribbon domain zf-C2H2_11 PF16622.5 29 ZKSCAN1-201 - 563 3.8e-08 32.9 29.6 1 6 3.1e-07 0.00021 21.0 4.4 4 26 376 398 374 399 0.92 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZKSCAN1-201 - 563 3.8e-08 32.9 29.6 2 6 0.084 56 3.6 0.1 6 26 406 426 403 427 0.79 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZKSCAN1-201 - 563 3.8e-08 32.9 29.6 3 6 0.054 36 4.2 0.2 5 26 433 454 430 455 0.79 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZKSCAN1-201 - 563 3.8e-08 32.9 29.6 4 6 0.0027 1.8 8.4 0.1 6 26 462 482 459 483 0.93 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZKSCAN1-201 - 563 3.8e-08 32.9 29.6 5 6 0.34 2.3e+02 1.7 0.1 6 26 490 510 487 511 0.76 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZKSCAN1-201 - 563 3.8e-08 32.9 29.6 6 6 0.0015 1 9.2 0.6 5 26 517 538 514 539 0.90 zinc-finger C2H2-type # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZKSCAN1-201.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZKSCAN1-201.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZKSCAN1-201.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZKSCAN1-201.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZKSCAN1-201.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:59:20 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZKSCAN1-202 - 527 6.6e-48 159.1 34.5 1 6 0.0064 4.4 7.9 2.1 10 26 336 352 336 352 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZKSCAN1-202 - 527 6.6e-48 159.1 34.5 2 6 1.3e-11 8.9e-09 35.4 0.2 2 25 356 379 355 379 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZKSCAN1-202 - 527 6.6e-48 159.1 34.5 3 6 1.3e-11 8.9e-09 35.4 1.1 1 26 383 408 383 408 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZKSCAN1-202 - 527 6.6e-48 159.1 34.5 4 6 2.1e-10 1.4e-07 31.6 0.1 1 25 411 435 411 436 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZKSCAN1-202 - 527 6.6e-48 159.1 34.5 5 6 5e-13 3.4e-10 39.9 0.4 1 25 439 463 439 464 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZKSCAN1-202 - 527 6.6e-48 159.1 34.5 6 6 1.1e-09 7.8e-07 29.3 1.9 4 26 470 492 467 492 0.91 Zinc-finger double domain SCAN PF02023.17 90 ZKSCAN1-202 - 527 8.8e-41 137.6 1.6 1 1 2.5e-43 1.7e-40 136.7 1.6 1 87 16 102 16 105 0.97 SCAN domain zf-C2H2 PF00096.26 23 ZKSCAN1-202 - 527 1.8e-37 125.7 46.7 1 6 1.3e-07 9e-05 22.7 3.9 1 23 341 363 341 363 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZKSCAN1-202 - 527 1.8e-37 125.7 46.7 2 6 3.9e-08 2.7e-05 24.4 0.1 1 23 369 391 369 391 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZKSCAN1-202 - 527 1.8e-37 125.7 46.7 3 6 1.4e-08 9.4e-06 25.8 1.7 1 23 397 419 397 419 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZKSCAN1-202 - 527 1.8e-37 125.7 46.7 4 6 4.2e-10 2.9e-07 30.6 0.4 1 23 425 447 425 447 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZKSCAN1-202 - 527 1.8e-37 125.7 46.7 5 6 2.1e-08 1.4e-05 25.2 0.4 1 23 453 475 453 475 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZKSCAN1-202 - 527 1.8e-37 125.7 46.7 6 6 3.4e-08 2.3e-05 24.6 3.7 1 23 481 503 481 503 0.99 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZKSCAN1-202 - 527 1.2e-15 56.8 38.4 1 6 0.0001 0.072 14.0 3.0 1 23 341 363 341 364 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZKSCAN1-202 - 527 1.2e-15 56.8 38.4 2 6 0.00039 0.27 12.2 0.2 1 23 369 391 369 392 0.90 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZKSCAN1-202 - 527 1.2e-15 56.8 38.4 3 6 0.0019 1.3 10.0 1.6 1 23 397 419 397 420 0.90 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZKSCAN1-202 - 527 1.2e-15 56.8 38.4 4 6 1e-05 0.007 17.1 0.4 1 23 425 447 425 448 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZKSCAN1-202 - 527 1.2e-15 56.8 38.4 5 6 0.00023 0.16 12.9 0.3 1 23 453 475 453 476 0.90 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZKSCAN1-202 - 527 1.2e-15 56.8 38.4 6 6 0.00015 0.11 13.5 1.7 1 23 481 503 481 504 0.86 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZKSCAN1-202 - 527 2.8e-12 46.3 34.4 1 6 6.8e-05 0.047 13.7 1.7 2 24 341 363 340 366 0.92 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZKSCAN1-202 - 527 2.8e-12 46.3 34.4 2 6 0.00073 0.5 10.4 0.4 2 12 369 379 369 380 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZKSCAN1-202 - 527 2.8e-12 46.3 34.4 3 6 0.00055 0.38 10.8 1.1 2 20 397 415 397 422 0.78 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZKSCAN1-202 - 527 2.8e-12 46.3 34.4 4 6 0.00013 0.087 12.9 0.6 2 24 425 447 425 450 0.88 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZKSCAN1-202 - 527 2.8e-12 46.3 34.4 5 6 0.00019 0.13 12.3 0.2 2 14 453 465 453 478 0.76 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZKSCAN1-202 - 527 2.8e-12 46.3 34.4 6 6 0.0059 4.1 7.5 0.3 2 12 481 491 481 502 0.93 C2H2-type zinc finger KRAB PF01352.27 42 ZKSCAN1-202 - 527 1.2e-08 34.4 0.0 1 1 3.4e-11 2.4e-08 33.5 0.0 2 37 191 226 190 230 0.95 KRAB box zf-C2H2_11 PF16622.5 29 ZKSCAN1-202 - 527 2.4e-08 33.6 29.6 1 6 2.8e-07 0.00019 21.1 4.4 4 26 340 362 338 363 0.92 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZKSCAN1-202 - 527 2.4e-08 33.6 29.6 2 6 0.075 51 3.7 0.1 6 26 370 390 367 391 0.79 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZKSCAN1-202 - 527 2.4e-08 33.6 29.6 3 6 0.048 33 4.3 0.2 5 26 397 418 394 419 0.79 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZKSCAN1-202 - 527 2.4e-08 33.6 29.6 4 6 0.0024 1.7 8.5 0.1 6 26 426 446 423 447 0.93 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZKSCAN1-202 - 527 2.4e-08 33.6 29.6 5 6 0.3 2.1e+02 1.8 0.1 6 26 454 474 451 475 0.76 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZKSCAN1-202 - 527 2.4e-08 33.6 29.6 6 6 0.0013 0.93 9.3 0.6 5 26 481 502 478 503 0.90 zinc-finger C2H2-type Zn-ribbon_8 PF09723.10 40 ZKSCAN1-202 - 527 2.6e-08 33.9 25.1 1 5 0.071 49 4.2 0.4 7 19 342 354 340 364 0.80 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZKSCAN1-202 - 527 2.6e-08 33.9 25.1 2 5 5e-06 0.0034 17.4 1.4 6 34 369 404 368 408 0.90 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZKSCAN1-202 - 527 2.6e-08 33.9 25.1 3 5 2.1e-05 0.014 15.4 4.9 6 38 425 464 424 465 0.92 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZKSCAN1-202 - 527 2.6e-08 33.9 25.1 4 5 2.6e-05 0.018 15.2 3.8 6 38 453 492 452 493 0.85 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZKSCAN1-202 - 527 2.6e-08 33.9 25.1 5 5 0.0031 2.1 8.5 0.2 6 17 481 492 480 502 0.86 Zinc ribbon domain # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZKSCAN1-202.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZKSCAN1-202.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZKSCAN1-202.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZKSCAN1-202.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZKSCAN1-202.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:59:21 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZKSCAN1-203.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZKSCAN1-203.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZKSCAN1-203.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZKSCAN1-203.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZKSCAN1-203.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:59:21 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- SCAN PF02023.17 90 ZKSCAN1-204 - 200 1.8e-41 139.9 1.6 1 1 1.5e-45 2.7e-41 139.3 1.6 1 87 52 138 52 141 0.97 SCAN domain # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZKSCAN1-204.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZKSCAN1-204.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZKSCAN1-204.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZKSCAN1-204.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZKSCAN1-204.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:59:21 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZKSCAN1-205 - 350 3.7e-49 163.1 34.5 1 6 0.0049 2.7 8.6 2.1 10 26 159 175 159 175 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZKSCAN1-205 - 350 3.7e-49 163.1 34.5 2 6 9.6e-12 5.4e-09 36.1 0.2 2 25 179 202 178 202 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZKSCAN1-205 - 350 3.7e-49 163.1 34.5 3 6 9.6e-12 5.4e-09 36.1 1.1 1 26 206 231 206 231 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZKSCAN1-205 - 350 3.7e-49 163.1 34.5 4 6 1.5e-10 8.6e-08 32.3 0.1 1 25 234 258 234 259 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZKSCAN1-205 - 350 3.7e-49 163.1 34.5 5 6 3.7e-13 2.1e-10 40.6 0.4 1 25 262 286 262 287 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZKSCAN1-205 - 350 3.7e-49 163.1 34.5 6 6 8.4e-10 4.7e-07 29.9 1.9 4 26 293 315 290 315 0.91 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZKSCAN1-205 - 350 9.4e-39 129.7 46.7 1 7 8.7 4.9e+03 -1.6 0.1 7 17 142 152 142 153 0.86 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZKSCAN1-205 - 350 9.4e-39 129.7 46.7 2 7 9.8e-08 5.5e-05 23.4 3.9 1 23 164 186 164 186 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZKSCAN1-205 - 350 9.4e-39 129.7 46.7 3 7 2.9e-08 1.6e-05 25.1 0.1 1 23 192 214 192 214 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZKSCAN1-205 - 350 9.4e-39 129.7 46.7 4 7 1e-08 5.7e-06 26.5 1.7 1 23 220 242 220 242 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZKSCAN1-205 - 350 9.4e-39 129.7 46.7 5 7 3.1e-10 1.7e-07 31.3 0.4 1 23 248 270 248 270 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZKSCAN1-205 - 350 9.4e-39 129.7 46.7 6 7 1.6e-08 8.7e-06 25.9 0.4 1 23 276 298 276 298 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZKSCAN1-205 - 350 9.4e-39 129.7 46.7 7 7 2.5e-08 1.4e-05 25.3 3.7 1 23 304 326 304 326 0.99 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZKSCAN1-205 - 350 8.4e-17 60.4 38.4 1 6 7.7e-05 0.043 14.7 3.0 1 23 164 186 164 187 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZKSCAN1-205 - 350 8.4e-17 60.4 38.4 2 6 0.00029 0.16 12.9 0.2 1 23 192 214 192 215 0.90 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZKSCAN1-205 - 350 8.4e-17 60.4 38.4 3 6 0.0014 0.81 10.7 1.6 1 23 220 242 220 243 0.90 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZKSCAN1-205 - 350 8.4e-17 60.4 38.4 4 6 7.6e-06 0.0042 17.8 0.4 1 23 248 270 248 271 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZKSCAN1-205 - 350 8.4e-17 60.4 38.4 5 6 0.00017 0.096 13.6 0.3 1 23 276 298 276 299 0.90 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZKSCAN1-205 - 350 8.4e-17 60.4 38.4 6 6 0.00011 0.063 14.1 1.7 1 23 304 326 304 327 0.86 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZKSCAN1-205 - 350 1.7e-13 50.2 34.5 1 6 5e-05 0.028 14.4 1.7 2 24 164 186 163 189 0.92 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZKSCAN1-205 - 350 1.7e-13 50.2 34.5 2 6 0.00056 0.32 11.1 0.4 2 12 192 202 192 203 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZKSCAN1-205 - 350 1.7e-13 50.2 34.5 3 6 0.00042 0.24 11.5 1.1 2 20 220 238 220 245 0.78 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZKSCAN1-205 - 350 1.7e-13 50.2 34.5 4 6 9.4e-05 0.053 13.5 0.6 2 24 248 270 248 273 0.88 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZKSCAN1-205 - 350 1.7e-13 50.2 34.5 5 6 0.00014 0.079 13.0 0.2 2 16 276 290 276 301 0.76 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZKSCAN1-205 - 350 1.7e-13 50.2 34.5 6 6 0.0045 2.5 8.2 0.3 2 12 304 314 304 325 0.93 C2H2-type zinc finger zf-C2H2_11 PF16622.5 29 ZKSCAN1-205 - 350 1.5e-09 37.4 29.6 1 6 2.1e-07 0.00012 21.8 4.4 4 26 163 185 161 186 0.92 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZKSCAN1-205 - 350 1.5e-09 37.4 29.6 2 6 0.057 32 4.4 0.1 6 26 193 213 190 214 0.79 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZKSCAN1-205 - 350 1.5e-09 37.4 29.6 3 6 0.037 20 5.0 0.2 5 26 220 241 217 242 0.79 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZKSCAN1-205 - 350 1.5e-09 37.4 29.6 4 6 0.0018 1 9.2 0.1 6 26 249 269 246 270 0.93 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZKSCAN1-205 - 350 1.5e-09 37.4 29.6 5 6 0.23 1.3e+02 2.5 0.2 6 26 277 297 274 298 0.77 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZKSCAN1-205 - 350 1.5e-09 37.4 29.6 6 6 0.001 0.57 10.0 0.6 5 26 304 325 301 326 0.90 zinc-finger C2H2-type Zn-ribbon_8 PF09723.10 40 ZKSCAN1-205 - 350 3.3e-09 36.7 25.1 1 5 0.054 30 4.8 0.4 7 19 165 177 163 187 0.80 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZKSCAN1-205 - 350 3.3e-09 36.7 25.1 2 5 3.6e-06 0.002 18.2 1.4 6 34 192 227 191 231 0.90 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZKSCAN1-205 - 350 3.3e-09 36.7 25.1 3 5 1.3e-05 0.0073 16.4 4.8 6 38 248 287 247 289 0.92 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZKSCAN1-205 - 350 3.3e-09 36.7 25.1 4 5 1.8e-05 0.01 16.0 3.9 6 38 276 315 275 317 0.85 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZKSCAN1-205 - 350 3.3e-09 36.7 25.1 5 5 0.0023 1.3 9.2 0.2 6 17 304 315 302 326 0.86 Zinc ribbon domain KRAB PF01352.27 42 ZKSCAN1-205 - 350 7.6e-09 35.1 0.0 1 1 2.5e-11 1.4e-08 34.3 0.0 2 37 14 49 13 53 0.95 KRAB box XPA_N PF01286.18 32 ZKSCAN1-205 - 350 1.6e-07 31.3 26.1 1 6 0.027 15 5.7 2.4 3 14 165 176 163 178 0.89 XPA protein N-terminal XPA_N PF01286.18 32 ZKSCAN1-205 - 350 1.6e-07 31.3 26.1 2 6 0.017 9.8 6.3 0.1 3 12 193 202 191 208 0.88 XPA protein N-terminal XPA_N PF01286.18 32 ZKSCAN1-205 - 350 1.6e-07 31.3 26.1 3 6 0.0039 2.2 8.4 0.5 3 14 221 232 219 233 0.88 XPA protein N-terminal XPA_N PF01286.18 32 ZKSCAN1-205 - 350 1.6e-07 31.3 26.1 4 6 0.0024 1.3 9.1 0.3 3 14 249 260 247 264 0.92 XPA protein N-terminal XPA_N PF01286.18 32 ZKSCAN1-205 - 350 1.6e-07 31.3 26.1 5 6 0.0037 2.1 8.5 0.1 3 16 277 291 275 294 0.81 XPA protein N-terminal XPA_N PF01286.18 32 ZKSCAN1-205 - 350 1.6e-07 31.3 26.1 6 6 0.0084 4.7 7.3 0.1 3 14 305 316 303 320 0.90 XPA protein N-terminal # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZKSCAN1-205.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZKSCAN1-205.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZKSCAN1-205.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZKSCAN1-205.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZKSCAN1-205.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:59:22 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZKSCAN1-206 - 527 6.6e-48 159.1 34.5 1 6 0.0064 4.4 7.9 2.1 10 26 336 352 336 352 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZKSCAN1-206 - 527 6.6e-48 159.1 34.5 2 6 1.3e-11 8.9e-09 35.4 0.2 2 25 356 379 355 379 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZKSCAN1-206 - 527 6.6e-48 159.1 34.5 3 6 1.3e-11 8.9e-09 35.4 1.1 1 26 383 408 383 408 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZKSCAN1-206 - 527 6.6e-48 159.1 34.5 4 6 2.1e-10 1.4e-07 31.6 0.1 1 25 411 435 411 436 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZKSCAN1-206 - 527 6.6e-48 159.1 34.5 5 6 5e-13 3.4e-10 39.9 0.4 1 25 439 463 439 464 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZKSCAN1-206 - 527 6.6e-48 159.1 34.5 6 6 1.1e-09 7.8e-07 29.3 1.9 4 26 470 492 467 492 0.91 Zinc-finger double domain SCAN PF02023.17 90 ZKSCAN1-206 - 527 8.8e-41 137.6 1.6 1 1 2.5e-43 1.7e-40 136.7 1.6 1 87 16 102 16 105 0.97 SCAN domain zf-C2H2 PF00096.26 23 ZKSCAN1-206 - 527 1.8e-37 125.7 46.7 1 6 1.3e-07 9e-05 22.7 3.9 1 23 341 363 341 363 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZKSCAN1-206 - 527 1.8e-37 125.7 46.7 2 6 3.9e-08 2.7e-05 24.4 0.1 1 23 369 391 369 391 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZKSCAN1-206 - 527 1.8e-37 125.7 46.7 3 6 1.4e-08 9.4e-06 25.8 1.7 1 23 397 419 397 419 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZKSCAN1-206 - 527 1.8e-37 125.7 46.7 4 6 4.2e-10 2.9e-07 30.6 0.4 1 23 425 447 425 447 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZKSCAN1-206 - 527 1.8e-37 125.7 46.7 5 6 2.1e-08 1.4e-05 25.2 0.4 1 23 453 475 453 475 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZKSCAN1-206 - 527 1.8e-37 125.7 46.7 6 6 3.4e-08 2.3e-05 24.6 3.7 1 23 481 503 481 503 0.99 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZKSCAN1-206 - 527 1.2e-15 56.8 38.4 1 6 0.0001 0.072 14.0 3.0 1 23 341 363 341 364 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZKSCAN1-206 - 527 1.2e-15 56.8 38.4 2 6 0.00039 0.27 12.2 0.2 1 23 369 391 369 392 0.90 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZKSCAN1-206 - 527 1.2e-15 56.8 38.4 3 6 0.0019 1.3 10.0 1.6 1 23 397 419 397 420 0.90 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZKSCAN1-206 - 527 1.2e-15 56.8 38.4 4 6 1e-05 0.007 17.1 0.4 1 23 425 447 425 448 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZKSCAN1-206 - 527 1.2e-15 56.8 38.4 5 6 0.00023 0.16 12.9 0.3 1 23 453 475 453 476 0.90 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZKSCAN1-206 - 527 1.2e-15 56.8 38.4 6 6 0.00015 0.11 13.5 1.7 1 23 481 503 481 504 0.86 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZKSCAN1-206 - 527 2.8e-12 46.3 34.4 1 6 6.8e-05 0.047 13.7 1.7 2 24 341 363 340 366 0.92 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZKSCAN1-206 - 527 2.8e-12 46.3 34.4 2 6 0.00073 0.5 10.4 0.4 2 12 369 379 369 380 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZKSCAN1-206 - 527 2.8e-12 46.3 34.4 3 6 0.00055 0.38 10.8 1.1 2 20 397 415 397 422 0.78 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZKSCAN1-206 - 527 2.8e-12 46.3 34.4 4 6 0.00013 0.087 12.9 0.6 2 24 425 447 425 450 0.88 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZKSCAN1-206 - 527 2.8e-12 46.3 34.4 5 6 0.00019 0.13 12.3 0.2 2 14 453 465 453 478 0.76 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZKSCAN1-206 - 527 2.8e-12 46.3 34.4 6 6 0.0059 4.1 7.5 0.3 2 12 481 491 481 502 0.93 C2H2-type zinc finger KRAB PF01352.27 42 ZKSCAN1-206 - 527 1.2e-08 34.4 0.0 1 1 3.4e-11 2.4e-08 33.5 0.0 2 37 191 226 190 230 0.95 KRAB box zf-C2H2_11 PF16622.5 29 ZKSCAN1-206 - 527 2.4e-08 33.6 29.6 1 6 2.8e-07 0.00019 21.1 4.4 4 26 340 362 338 363 0.92 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZKSCAN1-206 - 527 2.4e-08 33.6 29.6 2 6 0.075 51 3.7 0.1 6 26 370 390 367 391 0.79 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZKSCAN1-206 - 527 2.4e-08 33.6 29.6 3 6 0.048 33 4.3 0.2 5 26 397 418 394 419 0.79 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZKSCAN1-206 - 527 2.4e-08 33.6 29.6 4 6 0.0024 1.7 8.5 0.1 6 26 426 446 423 447 0.93 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZKSCAN1-206 - 527 2.4e-08 33.6 29.6 5 6 0.3 2.1e+02 1.8 0.1 6 26 454 474 451 475 0.76 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZKSCAN1-206 - 527 2.4e-08 33.6 29.6 6 6 0.0013 0.93 9.3 0.6 5 26 481 502 478 503 0.90 zinc-finger C2H2-type Zn-ribbon_8 PF09723.10 40 ZKSCAN1-206 - 527 2.6e-08 33.9 25.1 1 5 0.071 49 4.2 0.4 7 19 342 354 340 364 0.80 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZKSCAN1-206 - 527 2.6e-08 33.9 25.1 2 5 5e-06 0.0034 17.4 1.4 6 34 369 404 368 408 0.90 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZKSCAN1-206 - 527 2.6e-08 33.9 25.1 3 5 2.1e-05 0.014 15.4 4.9 6 38 425 464 424 465 0.92 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZKSCAN1-206 - 527 2.6e-08 33.9 25.1 4 5 2.6e-05 0.018 15.2 3.8 6 38 453 492 452 493 0.85 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZKSCAN1-206 - 527 2.6e-08 33.9 25.1 5 5 0.0031 2.1 8.5 0.2 6 17 481 492 480 502 0.86 Zinc ribbon domain # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZKSCAN1-206.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZKSCAN1-206.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZKSCAN1-206.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZKSCAN1-206.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZKSCAN1-206.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:59:22 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- Myb_DNA-bind_4 PF13837.6 90 ZKSCAN2-201 - 967 6.4e-39 132.2 1.0 1 2 1.8e-20 1.8e-17 63.5 0.0 2 90 341 425 340 425 0.93 Myb/SANT-like DNA-binding domain Myb_DNA-bind_4 PF13837.6 90 ZKSCAN2-201 - 967 6.4e-39 132.2 1.0 2 2 1.8e-21 1.8e-18 66.7 0.2 2 90 498 582 497 582 0.92 Myb/SANT-like DNA-binding domain SCAN PF02023.17 90 ZKSCAN2-201 - 967 5e-38 128.8 3.0 1 1 2.1e-40 2.1e-37 126.8 3.0 1 87 41 127 41 129 0.97 SCAN domain zf-H2C2_2 PF13465.6 26 ZKSCAN2-201 - 967 7e-38 127.4 52.3 1 7 6.7e-05 0.066 13.7 5.8 8 25 768 785 765 786 0.87 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZKSCAN2-201 - 967 7e-38 127.4 52.3 2 7 1.1e-10 1.1e-07 31.9 0.2 2 25 790 813 789 814 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZKSCAN2-201 - 967 7e-38 127.4 52.3 3 7 1.3e-08 1.3e-05 25.4 1.7 5 25 821 841 818 842 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZKSCAN2-201 - 967 7e-38 127.4 52.3 4 7 8.7e-11 8.7e-08 32.3 0.2 5 26 849 870 845 870 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZKSCAN2-201 - 967 7e-38 127.4 52.3 5 7 8e-10 7.9e-07 29.2 1.9 1 26 873 898 873 898 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZKSCAN2-201 - 967 7e-38 127.4 52.3 6 7 3e-08 3e-05 24.2 1.4 2 25 902 925 901 926 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZKSCAN2-201 - 967 7e-38 127.4 52.3 7 7 2.3 2.3e+03 -0.7 1.4 2 18 930 952 930 953 0.74 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZKSCAN2-201 - 967 2.3e-31 106.5 46.8 1 6 2.5e-08 2.5e-05 24.5 2.0 1 23 775 797 775 797 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZKSCAN2-201 - 967 2.3e-31 106.5 46.8 2 6 2.3e-08 2.3e-05 24.6 0.4 1 23 803 825 803 825 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZKSCAN2-201 - 967 2.3e-31 106.5 46.8 3 6 2.2e-09 2.2e-06 27.8 1.9 1 23 831 853 831 853 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZKSCAN2-201 - 967 2.3e-31 106.5 46.8 4 6 8.1e-09 8e-06 26.0 2.3 1 23 859 881 859 881 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZKSCAN2-201 - 967 2.3e-31 106.5 46.8 5 6 3.5e-05 0.035 14.6 4.6 1 23 887 909 887 909 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZKSCAN2-201 - 967 2.3e-31 106.5 46.8 6 6 3.5e-05 0.034 14.6 0.5 3 23 917 937 915 937 0.95 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZKSCAN2-201 - 967 4.4e-15 55.1 50.3 1 8 3.2 3.2e+03 -0.5 0.1 5 20 392 412 391 414 0.70 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZKSCAN2-201 - 967 4.4e-15 55.1 50.3 2 8 5.6 5.6e+03 -1.3 0.1 5 15 549 559 548 570 0.78 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZKSCAN2-201 - 967 4.4e-15 55.1 50.3 3 8 2.6e-05 0.026 15.4 1.6 1 23 775 797 775 798 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZKSCAN2-201 - 967 4.4e-15 55.1 50.3 4 8 6.8e-05 0.067 14.1 0.3 1 23 803 825 803 826 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZKSCAN2-201 - 967 4.4e-15 55.1 50.3 5 8 4.1e-05 0.041 14.7 1.7 1 23 831 853 831 854 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZKSCAN2-201 - 967 4.4e-15 55.1 50.3 6 8 1.4e-05 0.014 16.2 1.9 1 23 859 881 859 882 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZKSCAN2-201 - 967 4.4e-15 55.1 50.3 7 8 0.00034 0.33 11.9 3.3 1 23 887 909 887 910 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZKSCAN2-201 - 967 4.4e-15 55.1 50.3 8 8 0.00044 0.44 11.5 0.5 2 23 916 937 915 938 0.80 C2H2-type zinc finger Myb_DNA-binding PF00249.31 46 ZKSCAN2-201 - 967 5.8e-07 29.6 1.4 1 2 0.00012 0.12 12.5 0.1 3 45 342 400 340 401 0.80 Myb-like DNA-binding domain Myb_DNA-binding PF00249.31 46 ZKSCAN2-201 - 967 5.8e-07 29.6 1.4 2 2 1.7e-05 0.017 15.3 0.1 4 45 500 557 498 558 0.88 Myb-like DNA-binding domain # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZKSCAN2-201.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZKSCAN2-201.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZKSCAN2-201.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZKSCAN2-201.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZKSCAN2-201.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:59:23 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- SCAN PF02023.17 90 ZKSCAN2-202 - 505 8.4e-38 128.1 3.0 1 2 2.4e-41 8.4e-38 128.1 3.0 1 87 41 127 41 129 0.97 SCAN domain SCAN PF02023.17 90 ZKSCAN2-202 - 505 8.4e-38 128.1 3.0 2 2 1.7 6.2e+03 -2.9 0.1 1 14 390 403 390 406 0.83 SCAN domain Myb_DNA-bind_4 PF13837.6 90 ZKSCAN2-202 - 505 2.4e-18 66.3 0.0 1 1 2e-21 7.1e-18 64.8 0.0 2 90 341 425 340 425 0.93 Myb/SANT-like DNA-binding domain # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZKSCAN2-202.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZKSCAN2-202.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZKSCAN2-202.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZKSCAN2-202.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZKSCAN2-202.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:59:23 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- Myb_DNA-bind_4 PF13837.6 90 ZKSCAN2-203 - 763 3.4e-39 133.1 1.0 1 2 1.4e-20 1.3e-17 63.9 0.0 2 90 137 221 136 221 0.93 Myb/SANT-like DNA-binding domain Myb_DNA-bind_4 PF13837.6 90 ZKSCAN2-203 - 763 3.4e-39 133.1 1.0 2 2 1.5e-21 1.3e-18 67.1 0.2 2 90 294 378 293 378 0.92 Myb/SANT-like DNA-binding domain zf-H2C2_2 PF13465.6 26 ZKSCAN2-203 - 763 1.1e-38 129.9 52.3 1 7 5.7e-05 0.051 14.0 5.8 8 25 564 581 561 582 0.87 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZKSCAN2-203 - 763 1.1e-38 129.9 52.3 2 7 9.3e-11 8.4e-08 32.3 0.2 2 25 586 609 585 610 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZKSCAN2-203 - 763 1.1e-38 129.9 52.3 3 7 1.1e-08 9.6e-06 25.8 1.7 5 25 617 637 614 638 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZKSCAN2-203 - 763 1.1e-38 129.9 52.3 4 7 7.4e-11 6.6e-08 32.6 0.2 5 26 645 666 641 666 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZKSCAN2-203 - 763 1.1e-38 129.9 52.3 5 7 6.7e-10 6e-07 29.6 1.9 1 26 669 694 669 694 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZKSCAN2-203 - 763 1.1e-38 129.9 52.3 6 7 2.6e-08 2.3e-05 24.6 1.4 2 25 698 721 697 722 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZKSCAN2-203 - 763 1.1e-38 129.9 52.3 7 7 2 1.8e+03 -0.3 1.5 2 18 726 748 726 749 0.74 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZKSCAN2-203 - 763 5.9e-32 108.3 46.8 1 6 2.1e-08 1.9e-05 24.9 2.0 1 23 571 593 571 593 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZKSCAN2-203 - 763 5.9e-32 108.3 46.8 2 6 2e-08 1.8e-05 24.9 0.4 1 23 599 621 599 621 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZKSCAN2-203 - 763 5.9e-32 108.3 46.8 3 6 1.9e-09 1.7e-06 28.2 1.9 1 23 627 649 627 649 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZKSCAN2-203 - 763 5.9e-32 108.3 46.8 4 6 6.9e-09 6.1e-06 26.4 2.3 1 23 655 677 655 677 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZKSCAN2-203 - 763 5.9e-32 108.3 46.8 5 6 3e-05 0.027 14.9 4.6 1 23 683 705 683 705 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZKSCAN2-203 - 763 5.9e-32 108.3 46.8 6 6 2.9e-05 0.026 15.0 0.5 3 23 713 733 711 733 0.95 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZKSCAN2-203 - 763 9.2e-16 57.2 50.3 1 8 2.7 2.4e+03 -0.1 0.1 5 20 188 208 187 210 0.70 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZKSCAN2-203 - 763 9.2e-16 57.2 50.3 2 8 4.8 4.3e+03 -0.9 0.1 5 15 345 355 344 366 0.78 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZKSCAN2-203 - 763 9.2e-16 57.2 50.3 3 8 2.2e-05 0.02 15.7 1.6 1 23 571 593 571 594 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZKSCAN2-203 - 763 9.2e-16 57.2 50.3 4 8 5.7e-05 0.051 14.4 0.3 1 23 599 621 599 622 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZKSCAN2-203 - 763 9.2e-16 57.2 50.3 5 8 3.4e-05 0.031 15.1 1.7 1 23 627 649 627 650 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZKSCAN2-203 - 763 9.2e-16 57.2 50.3 6 8 1.2e-05 0.011 16.5 1.9 1 23 655 677 655 678 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZKSCAN2-203 - 763 9.2e-16 57.2 50.3 7 8 0.00028 0.25 12.3 3.3 1 23 683 705 683 706 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZKSCAN2-203 - 763 9.2e-16 57.2 50.3 8 8 0.00037 0.33 11.9 0.5 2 23 712 733 711 734 0.80 C2H2-type zinc finger Myb_DNA-binding PF00249.31 46 ZKSCAN2-203 - 763 3e-07 30.5 1.4 1 2 0.0001 0.092 13.0 0.1 3 45 138 196 136 197 0.80 Myb-like DNA-binding domain Myb_DNA-binding PF00249.31 46 ZKSCAN2-203 - 763 3e-07 30.5 1.4 2 2 1.4e-05 0.013 15.7 0.1 4 45 296 353 294 354 0.88 Myb-like DNA-binding domain # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZKSCAN2-203.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZKSCAN2-203.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZKSCAN2-203.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZKSCAN2-203.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZKSCAN2-203.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:59:23 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZKSCAN3-201 - 538 9.1e-54 177.6 37.2 1 9 0.066 62 4.3 0.1 14 25 313 324 304 325 0.80 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZKSCAN3-201 - 538 9.1e-54 177.6 37.2 2 9 1.6e-12 1.5e-09 37.9 0.3 1 24 328 351 328 352 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZKSCAN3-201 - 538 9.1e-54 177.6 37.2 3 9 1.9e-12 1.8e-09 37.6 0.3 1 26 356 381 356 381 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZKSCAN3-201 - 538 9.1e-54 177.6 37.2 4 9 2.2e-12 2.1e-09 37.4 0.3 2 25 385 408 384 409 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZKSCAN3-201 - 538 9.1e-54 177.6 37.2 5 9 6.5e-10 6.2e-07 29.6 0.9 2 25 413 436 412 437 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZKSCAN3-201 - 538 9.1e-54 177.6 37.2 6 9 0.0023 2.2 8.8 0.2 1 14 440 453 440 459 0.88 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZKSCAN3-201 - 538 9.1e-54 177.6 37.2 7 9 0.0032 3 8.4 0.0 11 25 474 490 466 491 0.89 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZKSCAN3-201 - 538 9.1e-54 177.6 37.2 8 9 9.2e-11 8.7e-08 32.3 0.1 2 26 495 519 494 519 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZKSCAN3-201 - 538 9.1e-54 177.6 37.2 9 9 0.11 1e+02 3.6 0.0 2 14 523 535 522 537 0.88 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZKSCAN3-201 - 538 3e-43 143.9 46.8 1 7 4.4e-08 4.2e-05 23.8 2.7 1 23 314 336 314 336 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZKSCAN3-201 - 538 3e-43 143.9 46.8 2 7 1.5e-07 0.00014 22.1 0.0 1 23 342 364 342 364 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZKSCAN3-201 - 538 3e-43 143.9 46.8 3 7 5.2e-10 4.9e-07 29.8 1.0 1 23 370 392 370 392 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZKSCAN3-201 - 538 3e-43 143.9 46.8 4 7 3.3e-07 0.00031 21.0 3.2 1 23 398 420 398 420 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZKSCAN3-201 - 538 3e-43 143.9 46.8 5 7 1.4e-09 1.3e-06 28.5 3.1 1 23 426 448 426 448 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZKSCAN3-201 - 538 3e-43 143.9 46.8 6 7 1.8e-07 0.00017 21.8 0.4 1 23 480 502 480 502 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZKSCAN3-201 - 538 3e-43 143.9 46.8 7 7 7.3e-08 6.9e-05 23.1 0.5 1 23 508 530 508 530 0.99 Zinc finger, C2H2 type SCAN PF02023.17 90 ZKSCAN3-201 - 538 4.6e-42 141.7 1.2 1 1 9.9e-45 9.4e-42 140.8 1.2 2 89 43 130 42 131 0.97 SCAN domain zf-C2H2_4 PF13894.6 24 ZKSCAN3-201 - 538 2.6e-24 83.8 45.1 1 7 1.6e-05 0.015 16.1 2.2 1 23 314 336 314 337 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZKSCAN3-201 - 538 2.6e-24 83.8 45.1 2 7 0.00023 0.22 12.5 0.0 1 23 342 364 342 365 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZKSCAN3-201 - 538 2.6e-24 83.8 45.1 3 7 4.7e-06 0.0044 17.7 1.0 1 23 370 392 370 393 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZKSCAN3-201 - 538 2.6e-24 83.8 45.1 4 7 2.4e-05 0.023 15.5 2.7 1 23 398 420 398 421 0.90 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZKSCAN3-201 - 538 2.6e-24 83.8 45.1 5 7 2.6e-06 0.0024 18.6 2.2 1 23 426 448 426 449 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZKSCAN3-201 - 538 2.6e-24 83.8 45.1 6 7 4.1e-05 0.038 14.8 0.3 1 23 480 502 480 503 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZKSCAN3-201 - 538 2.6e-24 83.8 45.1 7 7 3.8e-05 0.036 14.9 0.3 1 23 508 530 508 531 0.96 C2H2-type zinc finger zf-C2H2_jaz PF12171.8 27 ZKSCAN3-201 - 538 3.7e-10 39.8 22.6 1 7 0.057 54 4.2 0.1 2 20 314 332 313 334 0.82 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZKSCAN3-201 - 538 3.7e-10 39.8 22.6 2 7 0.00023 0.21 11.9 0.0 2 22 342 362 341 362 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZKSCAN3-201 - 538 3.7e-10 39.8 22.6 3 7 4.5e-05 0.043 14.1 0.5 2 24 370 392 369 392 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZKSCAN3-201 - 538 3.7e-10 39.8 22.6 4 7 0.15 1.4e+02 2.9 0.4 2 12 398 408 397 416 0.86 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZKSCAN3-201 - 538 3.7e-10 39.8 22.6 5 7 0.045 43 4.6 0.1 4 22 428 446 425 446 0.90 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZKSCAN3-201 - 538 3.7e-10 39.8 22.6 6 7 0.23 2.1e+02 2.3 0.3 2 20 480 498 479 500 0.74 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZKSCAN3-201 - 538 3.7e-10 39.8 22.6 7 7 0.00048 0.46 10.8 0.1 4 24 510 530 507 531 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_6 PF13912.6 27 ZKSCAN3-201 - 538 3.3e-09 36.5 47.2 1 7 7.3e-05 0.069 13.2 2.1 1 24 313 336 313 339 0.87 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZKSCAN3-201 - 538 3.3e-09 36.5 47.2 2 7 0.017 16 5.6 0.8 2 11 342 351 342 351 0.96 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZKSCAN3-201 - 538 3.3e-09 36.5 47.2 3 7 6e-05 0.057 13.4 1.7 2 24 370 392 370 395 0.95 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZKSCAN3-201 - 538 3.3e-09 36.5 47.2 4 7 0.0064 6.1 7.0 2.2 2 13 398 409 398 421 0.80 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZKSCAN3-201 - 538 3.3e-09 36.5 47.2 5 7 0.014 13 5.9 0.2 2 12 426 436 426 441 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZKSCAN3-201 - 538 3.3e-09 36.5 47.2 6 7 7.1e-05 0.067 13.2 0.4 2 24 480 502 479 505 0.91 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZKSCAN3-201 - 538 3.3e-09 36.5 47.2 7 7 0.0086 8.1 6.6 0.6 2 24 508 530 508 532 0.93 C2H2-type zinc finger KRAB PF01352.27 42 ZKSCAN3-201 - 538 2.3e-08 33.5 0.0 1 1 4.7e-11 4.4e-08 32.6 0.0 3 42 215 253 213 253 0.95 KRAB box Zn-ribbon_8 PF09723.10 40 ZKSCAN3-201 - 538 1.1e-07 31.8 34.6 1 5 0.0052 4.9 7.4 5.4 8 34 316 349 312 352 0.89 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZKSCAN3-201 - 538 1.1e-07 31.8 34.6 2 5 0.0011 1 9.5 7.4 6 34 342 377 341 381 0.90 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZKSCAN3-201 - 538 1.1e-07 31.8 34.6 3 5 0.00032 0.3 11.2 6.7 6 35 370 406 368 409 0.91 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZKSCAN3-201 - 538 1.1e-07 31.8 34.6 4 5 5.5e-05 0.052 13.7 4.8 6 38 398 437 397 439 0.92 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZKSCAN3-201 - 538 1.1e-07 31.8 34.6 5 5 2.9e-06 0.0028 17.8 1.3 6 38 480 519 479 521 0.91 Zinc ribbon domain XPA_N PF01286.18 32 ZKSCAN3-201 - 538 5.4e-07 29.5 28.4 1 7 0.0019 1.8 8.7 0.2 3 14 315 326 313 330 0.91 XPA protein N-terminal XPA_N PF01286.18 32 ZKSCAN3-201 - 538 5.4e-07 29.5 28.4 2 7 0.0021 1.9 8.6 0.2 3 14 343 354 341 355 0.89 XPA protein N-terminal XPA_N PF01286.18 32 ZKSCAN3-201 - 538 5.4e-07 29.5 28.4 3 7 0.0016 1.5 8.9 0.5 3 14 371 382 369 383 0.90 XPA protein N-terminal XPA_N PF01286.18 32 ZKSCAN3-201 - 538 5.4e-07 29.5 28.4 4 7 0.0026 2.5 8.2 1.4 3 14 399 410 397 417 0.89 XPA protein N-terminal XPA_N PF01286.18 32 ZKSCAN3-201 - 538 5.4e-07 29.5 28.4 5 7 0.14 1.3e+02 2.7 0.0 3 14 427 438 425 444 0.84 XPA protein N-terminal XPA_N PF01286.18 32 ZKSCAN3-201 - 538 5.4e-07 29.5 28.4 6 7 0.11 1e+02 3.1 0.4 3 12 481 490 480 492 0.89 XPA protein N-terminal XPA_N PF01286.18 32 ZKSCAN3-201 - 538 5.4e-07 29.5 28.4 7 7 0.06 57 3.9 0.0 3 19 509 526 507 528 0.81 XPA protein N-terminal # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZKSCAN3-201.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZKSCAN3-201.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZKSCAN3-201.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZKSCAN3-201.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZKSCAN3-201.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:59:24 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZKSCAN3-202 - 390 8.9e-55 180.8 38.5 1 9 0.055 43 4.8 0.1 14 25 165 176 156 177 0.80 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZKSCAN3-202 - 390 8.9e-55 180.8 38.5 2 9 1.3e-12 9.9e-10 38.4 0.3 1 24 180 203 180 204 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZKSCAN3-202 - 390 8.9e-55 180.8 38.5 3 9 1.6e-12 1.2e-09 38.1 0.3 1 26 208 233 208 233 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZKSCAN3-202 - 390 8.9e-55 180.8 38.5 4 9 1.8e-12 1.4e-09 37.9 0.3 2 25 237 260 236 261 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZKSCAN3-202 - 390 8.9e-55 180.8 38.5 5 9 5.3e-10 4.2e-07 30.1 0.9 2 25 265 288 264 289 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZKSCAN3-202 - 390 8.9e-55 180.8 38.5 6 9 0.0021 1.6 9.3 0.3 1 14 292 305 292 309 0.87 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZKSCAN3-202 - 390 8.9e-55 180.8 38.5 7 9 0.0028 2.2 8.9 0.1 11 25 326 342 320 343 0.89 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZKSCAN3-202 - 390 8.9e-55 180.8 38.5 8 9 7.6e-11 5.9e-08 32.8 0.1 2 26 347 371 346 371 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZKSCAN3-202 - 390 8.9e-55 180.8 38.5 9 9 0.093 72 4.1 0.0 2 14 375 387 374 389 0.88 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZKSCAN3-202 - 390 2e-44 147.6 46.8 1 7 3.6e-08 2.8e-05 24.3 2.7 1 23 166 188 166 188 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZKSCAN3-202 - 390 2e-44 147.6 46.8 2 7 1.2e-07 9.3e-05 22.7 0.0 1 23 194 216 194 216 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZKSCAN3-202 - 390 2e-44 147.6 46.8 3 7 4.3e-10 3.3e-07 30.4 1.0 1 23 222 244 222 244 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZKSCAN3-202 - 390 2e-44 147.6 46.8 4 7 2.7e-07 0.00021 21.6 3.2 1 23 250 272 250 272 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZKSCAN3-202 - 390 2e-44 147.6 46.8 5 7 1.1e-09 8.7e-07 29.1 3.1 1 23 278 300 278 300 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZKSCAN3-202 - 390 2e-44 147.6 46.8 6 7 1.5e-07 0.00012 22.4 0.4 1 23 332 354 332 354 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZKSCAN3-202 - 390 2e-44 147.6 46.8 7 7 6e-08 4.6e-05 23.6 0.5 1 23 360 382 360 382 0.99 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZKSCAN3-202 - 390 1.5e-24 84.5 47.9 1 7 1.3e-05 0.01 16.6 2.2 1 23 166 188 166 189 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZKSCAN3-202 - 390 1.5e-24 84.5 47.9 2 7 0.00019 0.15 13.0 0.0 1 23 194 216 194 217 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZKSCAN3-202 - 390 1.5e-24 84.5 47.9 3 7 3.8e-06 0.003 18.3 1.0 1 23 222 244 222 245 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZKSCAN3-202 - 390 1.5e-24 84.5 47.9 4 7 1.9e-05 0.015 16.1 2.7 1 23 250 272 250 273 0.90 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZKSCAN3-202 - 390 1.5e-24 84.5 47.9 5 7 2.1e-06 0.0016 19.1 2.2 1 23 278 300 278 301 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZKSCAN3-202 - 390 1.5e-24 84.5 47.9 6 7 3.3e-05 0.026 15.4 0.3 1 23 332 354 332 355 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZKSCAN3-202 - 390 1.5e-24 84.5 47.9 7 7 3.1e-05 0.024 15.4 0.3 1 23 360 382 360 383 0.96 C2H2-type zinc finger zf-C2H2_jaz PF12171.8 27 ZKSCAN3-202 - 390 2.7e-11 43.4 22.6 1 7 0.048 37 4.8 0.1 2 20 166 184 165 186 0.82 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZKSCAN3-202 - 390 2.7e-11 43.4 22.6 2 7 0.00019 0.15 12.4 0.0 2 22 194 214 193 214 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZKSCAN3-202 - 390 2.7e-11 43.4 22.6 3 7 3.7e-05 0.029 14.7 0.5 2 24 222 244 221 244 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZKSCAN3-202 - 390 2.7e-11 43.4 22.6 4 7 0.12 96 3.4 0.4 2 12 250 260 249 268 0.86 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZKSCAN3-202 - 390 2.7e-11 43.4 22.6 5 7 0.037 29 5.1 0.1 4 22 280 298 277 298 0.90 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZKSCAN3-202 - 390 2.7e-11 43.4 22.6 6 7 0.19 1.5e+02 2.9 0.3 2 20 332 350 331 352 0.75 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZKSCAN3-202 - 390 2.7e-11 43.4 22.6 7 7 0.0004 0.31 11.4 0.1 4 24 362 382 359 383 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_6 PF13912.6 27 ZKSCAN3-202 - 390 2.4e-10 40.1 47.2 1 7 6e-05 0.047 13.7 2.1 1 24 165 188 165 191 0.87 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZKSCAN3-202 - 390 2.4e-10 40.1 47.2 2 7 0.014 11 6.1 0.8 2 11 194 203 194 203 0.96 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZKSCAN3-202 - 390 2.4e-10 40.1 47.2 3 7 4.9e-05 0.039 14.0 1.7 2 24 222 244 222 247 0.95 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZKSCAN3-202 - 390 2.4e-10 40.1 47.2 4 7 0.0054 4.2 7.5 2.2 2 13 250 261 250 273 0.80 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZKSCAN3-202 - 390 2.4e-10 40.1 47.2 5 7 0.011 8.9 6.4 0.2 2 12 278 288 278 293 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZKSCAN3-202 - 390 2.4e-10 40.1 47.2 6 7 5.8e-05 0.045 13.8 0.4 2 24 332 354 331 357 0.91 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZKSCAN3-202 - 390 2.4e-10 40.1 47.2 7 7 0.0071 5.5 7.1 0.6 2 24 360 382 360 384 0.93 C2H2-type zinc finger KRAB PF01352.27 42 ZKSCAN3-202 - 390 1.6e-08 34.1 0.0 1 1 3.7e-11 2.9e-08 33.2 0.0 3 42 67 105 65 105 0.95 KRAB box Zn-ribbon_8 PF09723.10 40 ZKSCAN3-202 - 390 1.7e-08 34.5 34.5 1 6 0.0043 3.3 7.9 5.3 8 34 168 201 165 203 0.89 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZKSCAN3-202 - 390 1.7e-08 34.5 34.5 2 6 0.00072 0.56 10.4 7.2 6 35 194 230 193 234 0.90 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZKSCAN3-202 - 390 1.7e-08 34.5 34.5 3 6 0.0034 2.6 8.2 1.0 6 17 222 233 221 249 0.81 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZKSCAN3-202 - 390 1.7e-08 34.5 34.5 4 6 5.3e-05 0.041 14.0 5.0 6 38 250 289 249 291 0.92 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZKSCAN3-202 - 390 1.7e-08 34.5 34.5 5 6 0.013 10 6.3 0.1 6 16 278 288 277 299 0.85 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZKSCAN3-202 - 390 1.7e-08 34.5 34.5 6 6 2.3e-06 0.0018 18.3 1.3 6 38 332 371 331 373 0.91 Zinc ribbon domain # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZKSCAN3-202.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZKSCAN3-202.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZKSCAN3-202.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZKSCAN3-202.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZKSCAN3-202.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:59:24 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZKSCAN3-203 - 538 9.1e-54 177.6 37.2 1 9 0.066 62 4.3 0.1 14 25 313 324 304 325 0.80 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZKSCAN3-203 - 538 9.1e-54 177.6 37.2 2 9 1.6e-12 1.5e-09 37.9 0.3 1 24 328 351 328 352 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZKSCAN3-203 - 538 9.1e-54 177.6 37.2 3 9 1.9e-12 1.8e-09 37.6 0.3 1 26 356 381 356 381 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZKSCAN3-203 - 538 9.1e-54 177.6 37.2 4 9 2.2e-12 2.1e-09 37.4 0.3 2 25 385 408 384 409 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZKSCAN3-203 - 538 9.1e-54 177.6 37.2 5 9 6.5e-10 6.2e-07 29.6 0.9 2 25 413 436 412 437 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZKSCAN3-203 - 538 9.1e-54 177.6 37.2 6 9 0.0023 2.2 8.8 0.2 1 14 440 453 440 459 0.88 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZKSCAN3-203 - 538 9.1e-54 177.6 37.2 7 9 0.0032 3 8.4 0.0 11 25 474 490 466 491 0.89 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZKSCAN3-203 - 538 9.1e-54 177.6 37.2 8 9 9.2e-11 8.7e-08 32.3 0.1 2 26 495 519 494 519 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZKSCAN3-203 - 538 9.1e-54 177.6 37.2 9 9 0.11 1e+02 3.6 0.0 2 14 523 535 522 537 0.88 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZKSCAN3-203 - 538 3e-43 143.9 46.8 1 7 4.4e-08 4.2e-05 23.8 2.7 1 23 314 336 314 336 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZKSCAN3-203 - 538 3e-43 143.9 46.8 2 7 1.5e-07 0.00014 22.1 0.0 1 23 342 364 342 364 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZKSCAN3-203 - 538 3e-43 143.9 46.8 3 7 5.2e-10 4.9e-07 29.8 1.0 1 23 370 392 370 392 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZKSCAN3-203 - 538 3e-43 143.9 46.8 4 7 3.3e-07 0.00031 21.0 3.2 1 23 398 420 398 420 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZKSCAN3-203 - 538 3e-43 143.9 46.8 5 7 1.4e-09 1.3e-06 28.5 3.1 1 23 426 448 426 448 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZKSCAN3-203 - 538 3e-43 143.9 46.8 6 7 1.8e-07 0.00017 21.8 0.4 1 23 480 502 480 502 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZKSCAN3-203 - 538 3e-43 143.9 46.8 7 7 7.3e-08 6.9e-05 23.1 0.5 1 23 508 530 508 530 0.99 Zinc finger, C2H2 type SCAN PF02023.17 90 ZKSCAN3-203 - 538 4.6e-42 141.7 1.2 1 1 9.9e-45 9.4e-42 140.8 1.2 2 89 43 130 42 131 0.97 SCAN domain zf-C2H2_4 PF13894.6 24 ZKSCAN3-203 - 538 2.6e-24 83.8 45.1 1 7 1.6e-05 0.015 16.1 2.2 1 23 314 336 314 337 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZKSCAN3-203 - 538 2.6e-24 83.8 45.1 2 7 0.00023 0.22 12.5 0.0 1 23 342 364 342 365 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZKSCAN3-203 - 538 2.6e-24 83.8 45.1 3 7 4.7e-06 0.0044 17.7 1.0 1 23 370 392 370 393 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZKSCAN3-203 - 538 2.6e-24 83.8 45.1 4 7 2.4e-05 0.023 15.5 2.7 1 23 398 420 398 421 0.90 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZKSCAN3-203 - 538 2.6e-24 83.8 45.1 5 7 2.6e-06 0.0024 18.6 2.2 1 23 426 448 426 449 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZKSCAN3-203 - 538 2.6e-24 83.8 45.1 6 7 4.1e-05 0.038 14.8 0.3 1 23 480 502 480 503 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZKSCAN3-203 - 538 2.6e-24 83.8 45.1 7 7 3.8e-05 0.036 14.9 0.3 1 23 508 530 508 531 0.96 C2H2-type zinc finger zf-C2H2_jaz PF12171.8 27 ZKSCAN3-203 - 538 3.7e-10 39.8 22.6 1 7 0.057 54 4.2 0.1 2 20 314 332 313 334 0.82 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZKSCAN3-203 - 538 3.7e-10 39.8 22.6 2 7 0.00023 0.21 11.9 0.0 2 22 342 362 341 362 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZKSCAN3-203 - 538 3.7e-10 39.8 22.6 3 7 4.5e-05 0.043 14.1 0.5 2 24 370 392 369 392 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZKSCAN3-203 - 538 3.7e-10 39.8 22.6 4 7 0.15 1.4e+02 2.9 0.4 2 12 398 408 397 416 0.86 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZKSCAN3-203 - 538 3.7e-10 39.8 22.6 5 7 0.045 43 4.6 0.1 4 22 428 446 425 446 0.90 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZKSCAN3-203 - 538 3.7e-10 39.8 22.6 6 7 0.23 2.1e+02 2.3 0.3 2 20 480 498 479 500 0.74 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZKSCAN3-203 - 538 3.7e-10 39.8 22.6 7 7 0.00048 0.46 10.8 0.1 4 24 510 530 507 531 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_6 PF13912.6 27 ZKSCAN3-203 - 538 3.3e-09 36.5 47.2 1 7 7.3e-05 0.069 13.2 2.1 1 24 313 336 313 339 0.87 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZKSCAN3-203 - 538 3.3e-09 36.5 47.2 2 7 0.017 16 5.6 0.8 2 11 342 351 342 351 0.96 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZKSCAN3-203 - 538 3.3e-09 36.5 47.2 3 7 6e-05 0.057 13.4 1.7 2 24 370 392 370 395 0.95 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZKSCAN3-203 - 538 3.3e-09 36.5 47.2 4 7 0.0064 6.1 7.0 2.2 2 13 398 409 398 421 0.80 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZKSCAN3-203 - 538 3.3e-09 36.5 47.2 5 7 0.014 13 5.9 0.2 2 12 426 436 426 441 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZKSCAN3-203 - 538 3.3e-09 36.5 47.2 6 7 7.1e-05 0.067 13.2 0.4 2 24 480 502 479 505 0.91 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZKSCAN3-203 - 538 3.3e-09 36.5 47.2 7 7 0.0086 8.1 6.6 0.6 2 24 508 530 508 532 0.93 C2H2-type zinc finger KRAB PF01352.27 42 ZKSCAN3-203 - 538 2.3e-08 33.5 0.0 1 1 4.7e-11 4.4e-08 32.6 0.0 3 42 215 253 213 253 0.95 KRAB box Zn-ribbon_8 PF09723.10 40 ZKSCAN3-203 - 538 1.1e-07 31.8 34.6 1 5 0.0052 4.9 7.4 5.4 8 34 316 349 312 352 0.89 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZKSCAN3-203 - 538 1.1e-07 31.8 34.6 2 5 0.0011 1 9.5 7.4 6 34 342 377 341 381 0.90 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZKSCAN3-203 - 538 1.1e-07 31.8 34.6 3 5 0.00032 0.3 11.2 6.7 6 35 370 406 368 409 0.91 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZKSCAN3-203 - 538 1.1e-07 31.8 34.6 4 5 5.5e-05 0.052 13.7 4.8 6 38 398 437 397 439 0.92 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZKSCAN3-203 - 538 1.1e-07 31.8 34.6 5 5 2.9e-06 0.0028 17.8 1.3 6 38 480 519 479 521 0.91 Zinc ribbon domain XPA_N PF01286.18 32 ZKSCAN3-203 - 538 5.4e-07 29.5 28.4 1 7 0.0019 1.8 8.7 0.2 3 14 315 326 313 330 0.91 XPA protein N-terminal XPA_N PF01286.18 32 ZKSCAN3-203 - 538 5.4e-07 29.5 28.4 2 7 0.0021 1.9 8.6 0.2 3 14 343 354 341 355 0.89 XPA protein N-terminal XPA_N PF01286.18 32 ZKSCAN3-203 - 538 5.4e-07 29.5 28.4 3 7 0.0016 1.5 8.9 0.5 3 14 371 382 369 383 0.90 XPA protein N-terminal XPA_N PF01286.18 32 ZKSCAN3-203 - 538 5.4e-07 29.5 28.4 4 7 0.0026 2.5 8.2 1.4 3 14 399 410 397 417 0.89 XPA protein N-terminal XPA_N PF01286.18 32 ZKSCAN3-203 - 538 5.4e-07 29.5 28.4 5 7 0.14 1.3e+02 2.7 0.0 3 14 427 438 425 444 0.84 XPA protein N-terminal XPA_N PF01286.18 32 ZKSCAN3-203 - 538 5.4e-07 29.5 28.4 6 7 0.11 1e+02 3.1 0.4 3 12 481 490 480 492 0.89 XPA protein N-terminal XPA_N PF01286.18 32 ZKSCAN3-203 - 538 5.4e-07 29.5 28.4 7 7 0.06 57 3.9 0.0 3 19 509 526 507 528 0.81 XPA protein N-terminal # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZKSCAN3-203.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZKSCAN3-203.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZKSCAN3-203.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZKSCAN3-203.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZKSCAN3-203.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:59:25 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZKSCAN5-201 - 839 1.2e-64 212.0 113.6 1 16 9.5 1.2e+04 -3.0 0.2 7 12 111 116 110 117 0.83 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZKSCAN5-201 - 839 1.2e-64 212.0 113.6 2 16 0.0024 3.1 8.4 0.3 10 25 341 356 337 357 0.89 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZKSCAN5-201 - 839 1.2e-64 212.0 113.6 3 16 1e-09 1.3e-06 28.5 0.6 2 25 361 384 360 385 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZKSCAN5-201 - 839 1.2e-64 212.0 113.6 4 16 1.3e-11 1.7e-08 34.5 1.5 1 24 388 411 388 412 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZKSCAN5-201 - 839 1.2e-64 212.0 113.6 5 16 1.7e-06 0.0022 18.3 1.0 1 25 416 440 416 441 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZKSCAN5-201 - 839 1.2e-64 212.0 113.6 6 16 0.62 8e+02 0.8 1.1 2 18 445 461 444 469 0.68 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZKSCAN5-201 - 839 1.2e-64 212.0 113.6 7 16 2.6e-06 0.0034 17.7 1.4 5 24 539 558 537 560 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZKSCAN5-201 - 839 1.2e-64 212.0 113.6 8 16 1.8e-10 2.3e-07 30.9 0.7 1 25 563 587 563 588 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZKSCAN5-201 - 839 1.2e-64 212.0 113.6 9 16 6.7e-13 8.5e-10 38.6 1.5 1 24 591 614 591 615 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZKSCAN5-201 - 839 1.2e-64 212.0 113.6 10 16 4.6e-09 5.9e-06 26.5 0.4 1 25 619 643 619 644 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZKSCAN5-201 - 839 1.2e-64 212.0 113.6 11 16 0.00019 0.24 11.9 1.5 2 22 648 668 647 671 0.87 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZKSCAN5-201 - 839 1.2e-64 212.0 113.6 12 16 8.3e-05 0.11 13.0 0.1 11 25 713 727 708 728 0.86 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZKSCAN5-201 - 839 1.2e-64 212.0 113.6 13 16 1.1e-07 0.00015 22.1 0.1 2 21 732 751 731 755 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZKSCAN5-201 - 839 1.2e-64 212.0 113.6 14 16 0.073 94 3.7 3.3 5 25 759 783 758 783 0.77 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZKSCAN5-201 - 839 1.2e-64 212.0 113.6 15 16 9.5e-11 1.2e-07 31.8 0.9 1 24 787 810 787 811 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZKSCAN5-201 - 839 1.2e-64 212.0 113.6 16 16 0.9 1.1e+03 0.3 0.1 2 12 816 826 815 830 0.74 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZKSCAN5-201 - 839 5.9e-53 174.5 117.5 1 14 5.7 7.3e+03 -2.2 0.1 8 23 44 59 34 59 0.80 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZKSCAN5-201 - 839 5.9e-53 174.5 117.5 2 14 1.1e-05 0.014 15.8 2.2 1 23 346 368 346 368 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZKSCAN5-201 - 839 5.9e-53 174.5 117.5 3 14 2.4e-08 3.1e-05 24.2 2.0 1 23 374 396 374 396 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZKSCAN5-201 - 839 5.9e-53 174.5 117.5 4 14 2.8e-07 0.00036 20.8 2.8 1 23 402 424 402 424 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZKSCAN5-201 - 839 5.9e-53 174.5 117.5 5 14 2.5e-06 0.0032 17.9 2.8 3 23 432 452 430 452 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZKSCAN5-201 - 839 5.9e-53 174.5 117.5 6 14 2.1e-08 2.6e-05 24.4 2.1 1 23 549 571 549 571 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZKSCAN5-201 - 839 5.9e-53 174.5 117.5 7 14 3.8e-08 4.8e-05 23.6 2.2 1 23 577 599 577 599 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZKSCAN5-201 - 839 5.9e-53 174.5 117.5 8 14 2.4e-08 3.1e-05 24.2 1.0 1 23 605 627 605 627 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZKSCAN5-201 - 839 5.9e-53 174.5 117.5 9 14 8.9e-08 0.00011 22.4 0.8 1 23 633 655 633 655 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZKSCAN5-201 - 839 5.9e-53 174.5 117.5 10 14 0.00062 0.8 10.3 0.4 1 23 661 683 661 683 0.95 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZKSCAN5-201 - 839 5.9e-53 174.5 117.5 11 14 1.8e-08 2.4e-05 24.6 0.3 1 23 717 739 717 739 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZKSCAN5-201 - 839 5.9e-53 174.5 117.5 12 14 0.035 45 4.8 1.4 1 21 745 765 745 766 0.95 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZKSCAN5-201 - 839 5.9e-53 174.5 117.5 13 14 5.1e-07 0.00066 20.0 5.5 1 23 773 795 773 795 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZKSCAN5-201 - 839 5.9e-53 174.5 117.5 14 14 8.2e-05 0.1 13.1 3.5 1 23 801 823 801 823 0.98 Zinc finger, C2H2 type SCAN PF02023.17 90 ZKSCAN5-201 - 839 6.1e-41 138.1 5.4 1 1 1.4e-43 1.8e-40 136.7 5.4 2 89 47 134 46 135 0.98 SCAN domain zf-C2H2_4 PF13894.6 24 ZKSCAN5-201 - 839 9.2e-24 82.1 114.8 1 13 0.0036 4.6 8.4 1.5 1 23 346 368 346 369 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZKSCAN5-201 - 839 9.2e-24 82.1 114.8 2 13 0.0001 0.13 13.2 1.6 1 23 374 396 374 397 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZKSCAN5-201 - 839 9.2e-24 82.1 114.8 3 13 0.00041 0.52 11.3 3.2 1 23 402 424 402 425 0.85 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZKSCAN5-201 - 839 9.2e-24 82.1 114.8 4 13 0.00012 0.15 13.0 2.1 2 23 431 452 430 453 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZKSCAN5-201 - 839 9.2e-24 82.1 114.8 5 13 0.00015 0.19 12.7 1.7 1 23 549 571 549 572 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZKSCAN5-201 - 839 9.2e-24 82.1 114.8 6 13 8e-05 0.1 13.5 1.8 1 23 577 599 577 600 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZKSCAN5-201 - 839 9.2e-24 82.1 114.8 7 13 4.5e-05 0.058 14.3 1.3 1 23 605 627 605 628 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZKSCAN5-201 - 839 9.2e-24 82.1 114.8 8 13 3e-05 0.038 14.8 0.8 1 23 633 655 633 656 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZKSCAN5-201 - 839 9.2e-24 82.1 114.8 9 13 0.0035 4.4 8.4 0.5 1 23 661 683 661 684 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZKSCAN5-201 - 839 9.2e-24 82.1 114.8 10 13 2.7e-06 0.0035 18.1 0.2 1 23 717 739 717 740 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZKSCAN5-201 - 839 9.2e-24 82.1 114.8 11 13 0.12 1.5e+02 3.6 1.4 1 21 745 765 745 767 0.82 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZKSCAN5-201 - 839 9.2e-24 82.1 114.8 12 13 0.00034 0.43 11.5 4.1 1 23 773 795 773 796 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZKSCAN5-201 - 839 9.2e-24 82.1 114.8 13 13 0.00039 0.5 11.3 3.5 1 23 801 823 801 824 0.87 C2H2-type zinc finger KRAB PF01352.27 42 ZKSCAN5-201 - 839 6.2e-14 51.4 0.0 1 1 1.3e-16 1.6e-13 50.0 0.0 6 42 222 258 220 258 0.98 KRAB box # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZKSCAN5-201.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZKSCAN5-201.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZKSCAN5-201.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZKSCAN5-201.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZKSCAN5-201.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:59:25 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZKSCAN5-202 - 839 1.2e-64 212.0 113.6 1 16 9.5 1.2e+04 -3.0 0.2 7 12 111 116 110 117 0.83 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZKSCAN5-202 - 839 1.2e-64 212.0 113.6 2 16 0.0024 3.1 8.4 0.3 10 25 341 356 337 357 0.89 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZKSCAN5-202 - 839 1.2e-64 212.0 113.6 3 16 1e-09 1.3e-06 28.5 0.6 2 25 361 384 360 385 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZKSCAN5-202 - 839 1.2e-64 212.0 113.6 4 16 1.3e-11 1.7e-08 34.5 1.5 1 24 388 411 388 412 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZKSCAN5-202 - 839 1.2e-64 212.0 113.6 5 16 1.7e-06 0.0022 18.3 1.0 1 25 416 440 416 441 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZKSCAN5-202 - 839 1.2e-64 212.0 113.6 6 16 0.62 8e+02 0.8 1.1 2 18 445 461 444 469 0.68 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZKSCAN5-202 - 839 1.2e-64 212.0 113.6 7 16 2.6e-06 0.0034 17.7 1.4 5 24 539 558 537 560 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZKSCAN5-202 - 839 1.2e-64 212.0 113.6 8 16 1.8e-10 2.3e-07 30.9 0.7 1 25 563 587 563 588 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZKSCAN5-202 - 839 1.2e-64 212.0 113.6 9 16 6.7e-13 8.5e-10 38.6 1.5 1 24 591 614 591 615 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZKSCAN5-202 - 839 1.2e-64 212.0 113.6 10 16 4.6e-09 5.9e-06 26.5 0.4 1 25 619 643 619 644 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZKSCAN5-202 - 839 1.2e-64 212.0 113.6 11 16 0.00019 0.24 11.9 1.5 2 22 648 668 647 671 0.87 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZKSCAN5-202 - 839 1.2e-64 212.0 113.6 12 16 8.3e-05 0.11 13.0 0.1 11 25 713 727 708 728 0.86 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZKSCAN5-202 - 839 1.2e-64 212.0 113.6 13 16 1.1e-07 0.00015 22.1 0.1 2 21 732 751 731 755 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZKSCAN5-202 - 839 1.2e-64 212.0 113.6 14 16 0.073 94 3.7 3.3 5 25 759 783 758 783 0.77 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZKSCAN5-202 - 839 1.2e-64 212.0 113.6 15 16 9.5e-11 1.2e-07 31.8 0.9 1 24 787 810 787 811 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZKSCAN5-202 - 839 1.2e-64 212.0 113.6 16 16 0.9 1.1e+03 0.3 0.1 2 12 816 826 815 830 0.74 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZKSCAN5-202 - 839 5.9e-53 174.5 117.5 1 14 5.7 7.3e+03 -2.2 0.1 8 23 44 59 34 59 0.80 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZKSCAN5-202 - 839 5.9e-53 174.5 117.5 2 14 1.1e-05 0.014 15.8 2.2 1 23 346 368 346 368 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZKSCAN5-202 - 839 5.9e-53 174.5 117.5 3 14 2.4e-08 3.1e-05 24.2 2.0 1 23 374 396 374 396 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZKSCAN5-202 - 839 5.9e-53 174.5 117.5 4 14 2.8e-07 0.00036 20.8 2.8 1 23 402 424 402 424 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZKSCAN5-202 - 839 5.9e-53 174.5 117.5 5 14 2.5e-06 0.0032 17.9 2.8 3 23 432 452 430 452 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZKSCAN5-202 - 839 5.9e-53 174.5 117.5 6 14 2.1e-08 2.6e-05 24.4 2.1 1 23 549 571 549 571 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZKSCAN5-202 - 839 5.9e-53 174.5 117.5 7 14 3.8e-08 4.8e-05 23.6 2.2 1 23 577 599 577 599 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZKSCAN5-202 - 839 5.9e-53 174.5 117.5 8 14 2.4e-08 3.1e-05 24.2 1.0 1 23 605 627 605 627 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZKSCAN5-202 - 839 5.9e-53 174.5 117.5 9 14 8.9e-08 0.00011 22.4 0.8 1 23 633 655 633 655 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZKSCAN5-202 - 839 5.9e-53 174.5 117.5 10 14 0.00062 0.8 10.3 0.4 1 23 661 683 661 683 0.95 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZKSCAN5-202 - 839 5.9e-53 174.5 117.5 11 14 1.8e-08 2.4e-05 24.6 0.3 1 23 717 739 717 739 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZKSCAN5-202 - 839 5.9e-53 174.5 117.5 12 14 0.035 45 4.8 1.4 1 21 745 765 745 766 0.95 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZKSCAN5-202 - 839 5.9e-53 174.5 117.5 13 14 5.1e-07 0.00066 20.0 5.5 1 23 773 795 773 795 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZKSCAN5-202 - 839 5.9e-53 174.5 117.5 14 14 8.2e-05 0.1 13.1 3.5 1 23 801 823 801 823 0.98 Zinc finger, C2H2 type SCAN PF02023.17 90 ZKSCAN5-202 - 839 6.1e-41 138.1 5.4 1 1 1.4e-43 1.8e-40 136.7 5.4 2 89 47 134 46 135 0.98 SCAN domain zf-C2H2_4 PF13894.6 24 ZKSCAN5-202 - 839 9.2e-24 82.1 114.8 1 13 0.0036 4.6 8.4 1.5 1 23 346 368 346 369 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZKSCAN5-202 - 839 9.2e-24 82.1 114.8 2 13 0.0001 0.13 13.2 1.6 1 23 374 396 374 397 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZKSCAN5-202 - 839 9.2e-24 82.1 114.8 3 13 0.00041 0.52 11.3 3.2 1 23 402 424 402 425 0.85 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZKSCAN5-202 - 839 9.2e-24 82.1 114.8 4 13 0.00012 0.15 13.0 2.1 2 23 431 452 430 453 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZKSCAN5-202 - 839 9.2e-24 82.1 114.8 5 13 0.00015 0.19 12.7 1.7 1 23 549 571 549 572 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZKSCAN5-202 - 839 9.2e-24 82.1 114.8 6 13 8e-05 0.1 13.5 1.8 1 23 577 599 577 600 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZKSCAN5-202 - 839 9.2e-24 82.1 114.8 7 13 4.5e-05 0.058 14.3 1.3 1 23 605 627 605 628 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZKSCAN5-202 - 839 9.2e-24 82.1 114.8 8 13 3e-05 0.038 14.8 0.8 1 23 633 655 633 656 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZKSCAN5-202 - 839 9.2e-24 82.1 114.8 9 13 0.0035 4.4 8.4 0.5 1 23 661 683 661 684 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZKSCAN5-202 - 839 9.2e-24 82.1 114.8 10 13 2.7e-06 0.0035 18.1 0.2 1 23 717 739 717 740 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZKSCAN5-202 - 839 9.2e-24 82.1 114.8 11 13 0.12 1.5e+02 3.6 1.4 1 21 745 765 745 767 0.82 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZKSCAN5-202 - 839 9.2e-24 82.1 114.8 12 13 0.00034 0.43 11.5 4.1 1 23 773 795 773 796 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZKSCAN5-202 - 839 9.2e-24 82.1 114.8 13 13 0.00039 0.5 11.3 3.5 1 23 801 823 801 824 0.87 C2H2-type zinc finger KRAB PF01352.27 42 ZKSCAN5-202 - 839 6.2e-14 51.4 0.0 1 1 1.3e-16 1.6e-13 50.0 0.0 6 42 222 258 220 258 0.98 KRAB box # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZKSCAN5-202.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZKSCAN5-202.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZKSCAN5-202.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZKSCAN5-202.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZKSCAN5-202.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:59:26 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZKSCAN5-203 - 839 1.2e-64 212.0 113.6 1 16 9.5 1.2e+04 -3.0 0.2 7 12 111 116 110 117 0.83 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZKSCAN5-203 - 839 1.2e-64 212.0 113.6 2 16 0.0024 3.1 8.4 0.3 10 25 341 356 337 357 0.89 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZKSCAN5-203 - 839 1.2e-64 212.0 113.6 3 16 1e-09 1.3e-06 28.5 0.6 2 25 361 384 360 385 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZKSCAN5-203 - 839 1.2e-64 212.0 113.6 4 16 1.3e-11 1.7e-08 34.5 1.5 1 24 388 411 388 412 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZKSCAN5-203 - 839 1.2e-64 212.0 113.6 5 16 1.7e-06 0.0022 18.3 1.0 1 25 416 440 416 441 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZKSCAN5-203 - 839 1.2e-64 212.0 113.6 6 16 0.62 8e+02 0.8 1.1 2 18 445 461 444 469 0.68 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZKSCAN5-203 - 839 1.2e-64 212.0 113.6 7 16 2.6e-06 0.0034 17.7 1.4 5 24 539 558 537 560 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZKSCAN5-203 - 839 1.2e-64 212.0 113.6 8 16 1.8e-10 2.3e-07 30.9 0.7 1 25 563 587 563 588 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZKSCAN5-203 - 839 1.2e-64 212.0 113.6 9 16 6.7e-13 8.5e-10 38.6 1.5 1 24 591 614 591 615 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZKSCAN5-203 - 839 1.2e-64 212.0 113.6 10 16 4.6e-09 5.9e-06 26.5 0.4 1 25 619 643 619 644 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZKSCAN5-203 - 839 1.2e-64 212.0 113.6 11 16 0.00019 0.24 11.9 1.5 2 22 648 668 647 671 0.87 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZKSCAN5-203 - 839 1.2e-64 212.0 113.6 12 16 8.3e-05 0.11 13.0 0.1 11 25 713 727 708 728 0.86 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZKSCAN5-203 - 839 1.2e-64 212.0 113.6 13 16 1.1e-07 0.00015 22.1 0.1 2 21 732 751 731 755 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZKSCAN5-203 - 839 1.2e-64 212.0 113.6 14 16 0.073 94 3.7 3.3 5 25 759 783 758 783 0.77 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZKSCAN5-203 - 839 1.2e-64 212.0 113.6 15 16 9.5e-11 1.2e-07 31.8 0.9 1 24 787 810 787 811 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZKSCAN5-203 - 839 1.2e-64 212.0 113.6 16 16 0.9 1.1e+03 0.3 0.1 2 12 816 826 815 830 0.74 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZKSCAN5-203 - 839 5.9e-53 174.5 117.5 1 14 5.7 7.3e+03 -2.2 0.1 8 23 44 59 34 59 0.80 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZKSCAN5-203 - 839 5.9e-53 174.5 117.5 2 14 1.1e-05 0.014 15.8 2.2 1 23 346 368 346 368 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZKSCAN5-203 - 839 5.9e-53 174.5 117.5 3 14 2.4e-08 3.1e-05 24.2 2.0 1 23 374 396 374 396 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZKSCAN5-203 - 839 5.9e-53 174.5 117.5 4 14 2.8e-07 0.00036 20.8 2.8 1 23 402 424 402 424 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZKSCAN5-203 - 839 5.9e-53 174.5 117.5 5 14 2.5e-06 0.0032 17.9 2.8 3 23 432 452 430 452 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZKSCAN5-203 - 839 5.9e-53 174.5 117.5 6 14 2.1e-08 2.6e-05 24.4 2.1 1 23 549 571 549 571 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZKSCAN5-203 - 839 5.9e-53 174.5 117.5 7 14 3.8e-08 4.8e-05 23.6 2.2 1 23 577 599 577 599 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZKSCAN5-203 - 839 5.9e-53 174.5 117.5 8 14 2.4e-08 3.1e-05 24.2 1.0 1 23 605 627 605 627 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZKSCAN5-203 - 839 5.9e-53 174.5 117.5 9 14 8.9e-08 0.00011 22.4 0.8 1 23 633 655 633 655 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZKSCAN5-203 - 839 5.9e-53 174.5 117.5 10 14 0.00062 0.8 10.3 0.4 1 23 661 683 661 683 0.95 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZKSCAN5-203 - 839 5.9e-53 174.5 117.5 11 14 1.8e-08 2.4e-05 24.6 0.3 1 23 717 739 717 739 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZKSCAN5-203 - 839 5.9e-53 174.5 117.5 12 14 0.035 45 4.8 1.4 1 21 745 765 745 766 0.95 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZKSCAN5-203 - 839 5.9e-53 174.5 117.5 13 14 5.1e-07 0.00066 20.0 5.5 1 23 773 795 773 795 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZKSCAN5-203 - 839 5.9e-53 174.5 117.5 14 14 8.2e-05 0.1 13.1 3.5 1 23 801 823 801 823 0.98 Zinc finger, C2H2 type SCAN PF02023.17 90 ZKSCAN5-203 - 839 6.1e-41 138.1 5.4 1 1 1.4e-43 1.8e-40 136.7 5.4 2 89 47 134 46 135 0.98 SCAN domain zf-C2H2_4 PF13894.6 24 ZKSCAN5-203 - 839 9.2e-24 82.1 114.8 1 13 0.0036 4.6 8.4 1.5 1 23 346 368 346 369 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZKSCAN5-203 - 839 9.2e-24 82.1 114.8 2 13 0.0001 0.13 13.2 1.6 1 23 374 396 374 397 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZKSCAN5-203 - 839 9.2e-24 82.1 114.8 3 13 0.00041 0.52 11.3 3.2 1 23 402 424 402 425 0.85 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZKSCAN5-203 - 839 9.2e-24 82.1 114.8 4 13 0.00012 0.15 13.0 2.1 2 23 431 452 430 453 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZKSCAN5-203 - 839 9.2e-24 82.1 114.8 5 13 0.00015 0.19 12.7 1.7 1 23 549 571 549 572 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZKSCAN5-203 - 839 9.2e-24 82.1 114.8 6 13 8e-05 0.1 13.5 1.8 1 23 577 599 577 600 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZKSCAN5-203 - 839 9.2e-24 82.1 114.8 7 13 4.5e-05 0.058 14.3 1.3 1 23 605 627 605 628 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZKSCAN5-203 - 839 9.2e-24 82.1 114.8 8 13 3e-05 0.038 14.8 0.8 1 23 633 655 633 656 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZKSCAN5-203 - 839 9.2e-24 82.1 114.8 9 13 0.0035 4.4 8.4 0.5 1 23 661 683 661 684 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZKSCAN5-203 - 839 9.2e-24 82.1 114.8 10 13 2.7e-06 0.0035 18.1 0.2 1 23 717 739 717 740 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZKSCAN5-203 - 839 9.2e-24 82.1 114.8 11 13 0.12 1.5e+02 3.6 1.4 1 21 745 765 745 767 0.82 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZKSCAN5-203 - 839 9.2e-24 82.1 114.8 12 13 0.00034 0.43 11.5 4.1 1 23 773 795 773 796 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZKSCAN5-203 - 839 9.2e-24 82.1 114.8 13 13 0.00039 0.5 11.3 3.5 1 23 801 823 801 824 0.87 C2H2-type zinc finger KRAB PF01352.27 42 ZKSCAN5-203 - 839 6.2e-14 51.4 0.0 1 1 1.3e-16 1.6e-13 50.0 0.0 6 42 222 258 220 258 0.98 KRAB box # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZKSCAN5-203.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZKSCAN5-203.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZKSCAN5-203.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZKSCAN5-203.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZKSCAN5-203.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:59:26 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZKSCAN5-204 - 575 1.2e-69 227.8 105.4 1 16 0.0016 2 9.0 0.3 10 25 77 92 73 93 0.89 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZKSCAN5-204 - 575 1.2e-69 227.8 105.4 2 16 6.7e-10 8.6e-07 29.1 0.6 2 25 97 120 96 121 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZKSCAN5-204 - 575 1.2e-69 227.8 105.4 3 16 8.6e-12 1.1e-08 35.1 1.5 1 24 124 147 124 148 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZKSCAN5-204 - 575 1.2e-69 227.8 105.4 4 16 1.1e-06 0.0014 18.9 1.0 1 25 152 176 152 177 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZKSCAN5-204 - 575 1.2e-69 227.8 105.4 5 16 0.41 5.2e+02 1.4 1.1 2 18 181 197 180 205 0.68 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZKSCAN5-204 - 575 1.2e-69 227.8 105.4 6 16 1.7e-06 0.0022 18.3 1.4 5 24 275 294 273 296 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZKSCAN5-204 - 575 1.2e-69 227.8 105.4 7 16 1.2e-10 1.5e-07 31.5 0.7 1 25 299 323 299 324 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZKSCAN5-204 - 575 1.2e-69 227.8 105.4 8 16 4.3e-13 5.5e-10 39.2 1.5 1 24 327 350 327 351 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZKSCAN5-204 - 575 1.2e-69 227.8 105.4 9 16 3e-09 3.8e-06 27.1 0.4 1 25 355 379 355 380 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZKSCAN5-204 - 575 1.2e-69 227.8 105.4 10 16 0.00012 0.16 12.5 1.5 2 22 384 404 383 407 0.87 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZKSCAN5-204 - 575 1.2e-69 227.8 105.4 11 16 7.1 9.1e+03 -2.6 0.1 2 13 412 423 411 424 0.79 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZKSCAN5-204 - 575 1.2e-69 227.8 105.4 12 16 5.4e-05 0.069 13.6 0.1 11 25 449 463 444 464 0.86 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZKSCAN5-204 - 575 1.2e-69 227.8 105.4 13 16 7.4e-08 9.4e-05 22.7 0.1 2 21 468 487 467 491 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZKSCAN5-204 - 575 1.2e-69 227.8 105.4 14 16 0.048 61 4.3 3.4 5 25 495 519 494 519 0.77 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZKSCAN5-204 - 575 1.2e-69 227.8 105.4 15 16 6.1e-11 7.9e-08 32.4 0.9 1 24 523 546 523 547 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZKSCAN5-204 - 575 1.2e-69 227.8 105.4 16 16 0.59 7.6e+02 0.8 0.1 2 12 552 562 551 566 0.74 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZKSCAN5-204 - 575 1.8e-56 185.6 113.2 1 13 7e-06 0.0089 16.4 2.2 1 23 82 104 82 104 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZKSCAN5-204 - 575 1.8e-56 185.6 113.2 2 13 1.6e-08 2e-05 24.8 2.0 1 23 110 132 110 132 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZKSCAN5-204 - 575 1.8e-56 185.6 113.2 3 13 1.8e-07 0.00023 21.4 2.8 1 23 138 160 138 160 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZKSCAN5-204 - 575 1.8e-56 185.6 113.2 4 13 1.6e-06 0.002 18.4 2.8 3 23 168 188 166 188 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZKSCAN5-204 - 575 1.8e-56 185.6 113.2 5 13 1.3e-08 1.7e-05 25.0 2.1 1 23 285 307 285 307 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZKSCAN5-204 - 575 1.8e-56 185.6 113.2 6 13 2.4e-08 3.1e-05 24.2 2.2 1 23 313 335 313 335 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZKSCAN5-204 - 575 1.8e-56 185.6 113.2 7 13 1.6e-08 2e-05 24.8 1.0 1 23 341 363 341 363 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZKSCAN5-204 - 575 1.8e-56 185.6 113.2 8 13 5.7e-08 7.4e-05 23.0 0.8 1 23 369 391 369 391 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZKSCAN5-204 - 575 1.8e-56 185.6 113.2 9 13 0.0004 0.52 10.9 0.4 1 23 397 419 397 419 0.95 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZKSCAN5-204 - 575 1.8e-56 185.6 113.2 10 13 1.2e-08 1.5e-05 25.2 0.3 1 23 453 475 453 475 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZKSCAN5-204 - 575 1.8e-56 185.6 113.2 11 13 0.023 29 5.4 1.4 1 21 481 501 481 502 0.95 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZKSCAN5-204 - 575 1.8e-56 185.6 113.2 12 13 3.3e-07 0.00042 20.6 5.5 1 23 509 531 509 531 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZKSCAN5-204 - 575 1.8e-56 185.6 113.2 13 13 5.3e-05 0.067 13.7 3.5 1 23 537 559 537 559 0.98 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZKSCAN5-204 - 575 7.9e-28 94.7 109.1 1 13 0.0023 2.9 9.0 1.5 1 23 82 104 82 105 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZKSCAN5-204 - 575 7.9e-28 94.7 109.1 2 13 6.5e-05 0.083 13.8 1.6 1 23 110 132 110 133 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZKSCAN5-204 - 575 7.9e-28 94.7 109.1 3 13 0.00026 0.34 11.9 3.2 1 23 138 160 138 161 0.85 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZKSCAN5-204 - 575 7.9e-28 94.7 109.1 4 13 7.6e-05 0.097 13.6 2.1 2 23 167 188 166 189 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZKSCAN5-204 - 575 7.9e-28 94.7 109.1 5 13 9.4e-05 0.12 13.3 1.7 1 23 285 307 285 308 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZKSCAN5-204 - 575 7.9e-28 94.7 109.1 6 13 5.1e-05 0.065 14.1 1.8 1 23 313 335 313 336 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZKSCAN5-204 - 575 7.9e-28 94.7 109.1 7 13 2.9e-05 0.037 14.9 1.3 1 23 341 363 341 364 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZKSCAN5-204 - 575 7.9e-28 94.7 109.1 8 13 1.9e-05 0.024 15.4 0.8 1 23 369 391 369 392 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZKSCAN5-204 - 575 7.9e-28 94.7 109.1 9 13 0.0022 2.9 9.0 0.5 1 23 397 419 397 420 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZKSCAN5-204 - 575 7.9e-28 94.7 109.1 10 13 1.7e-06 0.0022 18.7 0.2 1 23 453 475 453 476 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZKSCAN5-204 - 575 7.9e-28 94.7 109.1 11 13 0.076 98 4.2 1.4 1 21 481 501 481 503 0.82 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZKSCAN5-204 - 575 7.9e-28 94.7 109.1 12 13 0.00022 0.28 12.1 4.1 1 23 509 531 509 532 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZKSCAN5-204 - 575 7.9e-28 94.7 109.1 13 13 0.00025 0.32 11.9 3.5 1 23 537 559 537 560 0.87 C2H2-type zinc finger Zn-ribbon_8 PF09723.10 40 ZKSCAN5-204 - 575 1.9e-07 31.1 57.4 1 9 0.025 31 4.8 3.3 7 35 83 118 82 123 0.75 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZKSCAN5-204 - 575 1.9e-07 31.1 57.4 2 9 0.0014 1.8 8.7 6.6 6 35 138 174 109 179 0.75 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZKSCAN5-204 - 575 1.9e-07 31.1 57.4 3 9 0.091 1.2e+02 3.0 0.6 7 15 286 294 274 296 0.66 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZKSCAN5-204 - 575 1.9e-07 31.1 57.4 4 9 0.0023 2.9 8.1 4.8 7 35 286 321 285 326 0.86 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZKSCAN5-204 - 575 1.9e-07 31.1 57.4 5 9 8.2e-06 0.01 15.9 1.9 6 36 313 350 311 354 0.87 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZKSCAN5-204 - 575 1.9e-07 31.1 57.4 6 9 0.0021 2.7 8.2 3.0 6 34 369 404 368 408 0.82 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZKSCAN5-204 - 575 1.9e-07 31.1 57.4 7 9 0.1 1.3e+02 2.8 0.6 7 19 398 410 396 417 0.78 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZKSCAN5-204 - 575 1.9e-07 31.1 57.4 8 9 0.019 24 5.2 1.2 6 36 453 490 452 492 0.75 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZKSCAN5-204 - 575 1.9e-07 31.1 57.4 9 9 0.0004 0.52 10.5 2.4 7 34 510 544 506 547 0.90 Zinc ribbon domain # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZKSCAN5-204.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZKSCAN5-204.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZKSCAN5-204.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZKSCAN5-204.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZKSCAN5-204.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:59:26 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZNF100-201 - 478 1.5e-88 287.6 99.8 1 13 3 2.4e+03 -0.7 0.0 10 24 108 122 106 124 0.74 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF100-201 - 478 1.5e-88 287.6 99.8 2 13 1.9e-07 0.00015 22.1 6.0 3 24 129 150 127 150 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF100-201 - 478 1.5e-88 287.6 99.8 3 13 1.9e-07 0.00015 22.1 1.8 1 25 155 179 155 179 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF100-201 - 478 1.5e-88 287.6 99.8 4 13 1.6e-11 1.2e-08 34.9 1.2 2 25 184 207 183 208 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF100-201 - 478 1.5e-88 287.6 99.8 5 13 1.5e-10 1.2e-07 31.8 1.5 1 25 211 235 211 236 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF100-201 - 478 1.5e-88 287.6 99.8 6 13 2.1e-10 1.6e-07 31.4 2.8 1 25 239 263 239 264 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF100-201 - 478 1.5e-88 287.6 99.8 7 13 5.3e-11 4.2e-08 33.3 1.1 1 25 267 291 267 292 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF100-201 - 478 1.5e-88 287.6 99.8 8 13 1.1e-08 8.4e-06 26.0 1.3 2 24 296 318 295 320 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF100-201 - 478 1.5e-88 287.6 99.8 9 13 6.2e-09 4.8e-06 26.7 2.8 2 25 324 347 323 347 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF100-201 - 478 1.5e-88 287.6 99.8 10 13 2e-12 1.5e-09 37.8 1.1 1 25 351 375 351 376 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF100-201 - 478 1.5e-88 287.6 99.8 11 13 5.4e-11 4.2e-08 33.3 0.7 1 25 379 403 379 404 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF100-201 - 478 1.5e-88 287.6 99.8 12 13 1.2e-10 9.5e-08 32.1 0.5 2 25 408 431 407 432 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF100-201 - 478 1.5e-88 287.6 99.8 13 13 9.8e-06 0.0076 16.6 0.2 2 25 436 459 435 460 0.94 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZNF100-201 - 478 9.1e-60 195.9 99.1 1 13 2 1.6e+03 -0.1 1.1 6 23 115 135 113 135 0.87 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF100-201 - 478 9.1e-60 195.9 99.1 2 13 0.0018 1.4 9.5 8.5 1 23 141 163 141 163 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF100-201 - 478 9.1e-60 195.9 99.1 3 13 1.1e-06 0.00087 19.6 1.0 1 23 169 191 169 191 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF100-201 - 478 9.1e-60 195.9 99.1 4 13 1.1e-08 8.8e-06 25.9 1.5 1 23 197 219 197 219 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF100-201 - 478 9.1e-60 195.9 99.1 5 13 3.6e-09 2.8e-06 27.5 2.5 1 23 225 247 225 247 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF100-201 - 478 9.1e-60 195.9 99.1 6 13 8e-09 6.2e-06 26.4 2.1 1 23 253 275 253 275 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF100-201 - 478 9.1e-60 195.9 99.1 7 13 2.5e-08 2e-05 24.8 0.7 1 23 281 303 281 303 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF100-201 - 478 9.1e-60 195.9 99.1 8 13 5.4e-07 0.00042 20.6 2.7 1 23 309 331 309 331 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF100-201 - 478 9.1e-60 195.9 99.1 9 13 8.6e-07 0.00067 20.0 0.3 1 23 337 359 337 359 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF100-201 - 478 9.1e-60 195.9 99.1 10 13 4.4e-08 3.4e-05 24.0 0.4 1 23 365 387 365 387 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF100-201 - 478 9.1e-60 195.9 99.1 11 13 6.2e-09 4.8e-06 26.7 0.4 1 23 393 415 393 415 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF100-201 - 478 9.1e-60 195.9 99.1 12 13 5.4e-09 4.2e-06 26.9 1.1 1 23 421 443 421 443 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF100-201 - 478 9.1e-60 195.9 99.1 13 13 0.38 3e+02 2.2 0.0 5 17 453 465 451 466 0.82 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZNF100-201 - 478 3.7e-30 102.0 89.5 1 12 0.011 9 7.4 6.8 1 23 141 163 141 164 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF100-201 - 478 3.7e-30 102.0 89.5 2 12 0.00082 0.64 11.0 0.7 1 23 169 191 169 192 0.91 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF100-201 - 478 3.7e-30 102.0 89.5 3 12 2.5e-05 0.02 15.7 1.1 1 23 197 219 197 220 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF100-201 - 478 3.7e-30 102.0 89.5 4 12 2.3e-05 0.018 15.8 1.6 1 23 225 247 225 248 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF100-201 - 478 3.7e-30 102.0 89.5 5 12 1.9e-05 0.015 16.1 1.2 1 23 253 275 253 276 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF100-201 - 478 3.7e-30 102.0 89.5 6 12 7.5e-06 0.0059 17.4 0.3 1 23 281 303 281 304 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF100-201 - 478 3.7e-30 102.0 89.5 7 12 0.00058 0.45 11.5 2.1 1 23 309 331 309 332 0.91 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF100-201 - 478 3.7e-30 102.0 89.5 8 12 0.00015 0.12 13.3 0.4 1 23 337 359 337 360 0.90 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF100-201 - 478 3.7e-30 102.0 89.5 9 12 4.4e-05 0.034 15.0 0.3 1 23 365 387 365 388 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF100-201 - 478 3.7e-30 102.0 89.5 10 12 2.4e-05 0.018 15.8 0.3 1 23 393 415 393 416 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF100-201 - 478 3.7e-30 102.0 89.5 11 12 4.1e-06 0.0032 18.2 0.8 1 23 421 443 421 444 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF100-201 - 478 3.7e-30 102.0 89.5 12 12 3.3 2.6e+03 -0.2 0.0 5 16 453 464 452 466 0.76 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF100-201 - 478 3.8e-22 77.8 100.0 1 13 2.5 2e+03 -1.0 0.7 9 25 120 136 119 138 0.80 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF100-201 - 478 3.8e-22 77.8 100.0 2 13 0.023 18 5.5 6.7 2 24 141 163 141 164 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF100-201 - 478 3.8e-22 77.8 100.0 3 13 0.00075 0.58 10.2 0.5 2 24 169 191 168 194 0.92 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF100-201 - 478 3.8e-22 77.8 100.0 4 13 0.00015 0.12 12.4 1.3 2 24 197 219 197 222 0.92 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF100-201 - 478 3.8e-22 77.8 100.0 5 13 0.00011 0.088 12.8 1.8 2 24 225 247 225 249 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF100-201 - 478 3.8e-22 77.8 100.0 6 13 3.9e-05 0.03 14.3 1.0 2 24 253 275 253 278 0.91 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF100-201 - 478 3.8e-22 77.8 100.0 7 13 3.4e-05 0.027 14.5 0.9 2 24 281 303 281 306 0.96 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF100-201 - 478 3.8e-22 77.8 100.0 8 13 0.00013 0.1 12.6 3.6 2 24 309 331 309 334 0.95 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF100-201 - 478 3.8e-22 77.8 100.0 9 13 4.4e-05 0.034 14.2 1.0 2 24 337 359 336 362 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF100-201 - 478 3.8e-22 77.8 100.0 10 13 0.00015 0.12 12.4 0.8 2 21 365 384 365 388 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF100-201 - 478 3.8e-22 77.8 100.0 11 13 3.3e-05 0.026 14.5 0.5 2 21 393 412 393 416 0.91 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF100-201 - 478 3.8e-22 77.8 100.0 12 13 1.3e-05 0.01 15.8 1.3 2 24 421 443 421 446 0.95 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF100-201 - 478 3.8e-22 77.8 100.0 13 13 6.6 5.2e+03 -2.4 0.1 6 12 453 459 452 459 0.86 C2H2-type zinc finger XPA_N PF01286.18 32 ZNF100-201 - 478 1.2e-17 63.7 53.9 1 12 0.76 5.9e+02 0.6 3.9 3 12 142 151 140 152 0.91 XPA protein N-terminal XPA_N PF01286.18 32 ZNF100-201 - 478 1.2e-17 63.7 53.9 2 12 0.076 59 3.8 0.1 3 11 170 178 169 180 0.90 XPA protein N-terminal XPA_N PF01286.18 32 ZNF100-201 - 478 1.2e-17 63.7 53.9 3 12 0.00062 0.48 10.5 0.1 3 15 198 210 196 216 0.82 XPA protein N-terminal XPA_N PF01286.18 32 ZNF100-201 - 478 1.2e-17 63.7 53.9 4 12 0.001 0.79 9.8 0.1 3 15 226 238 224 244 0.82 XPA protein N-terminal XPA_N PF01286.18 32 ZNF100-201 - 478 1.2e-17 63.7 53.9 5 12 0.0022 1.7 8.7 0.1 3 15 254 266 252 272 0.82 XPA protein N-terminal XPA_N PF01286.18 32 ZNF100-201 - 478 1.2e-17 63.7 53.9 6 12 0.00043 0.33 11.0 0.2 3 14 282 293 280 300 0.86 XPA protein N-terminal XPA_N PF01286.18 32 ZNF100-201 - 478 1.2e-17 63.7 53.9 7 12 0.0019 1.5 9.0 0.2 3 17 310 325 308 327 0.76 XPA protein N-terminal XPA_N PF01286.18 32 ZNF100-201 - 478 1.2e-17 63.7 53.9 8 12 0.0049 3.8 7.6 0.1 3 14 338 349 337 354 0.87 XPA protein N-terminal XPA_N PF01286.18 32 ZNF100-201 - 478 1.2e-17 63.7 53.9 9 12 0.00063 0.49 10.5 0.2 3 14 366 377 364 383 0.88 XPA protein N-terminal XPA_N PF01286.18 32 ZNF100-201 - 478 1.2e-17 63.7 53.9 10 12 0.00081 0.63 10.1 0.1 3 14 394 405 392 410 0.89 XPA protein N-terminal XPA_N PF01286.18 32 ZNF100-201 - 478 1.2e-17 63.7 53.9 11 12 0.00099 0.77 9.8 0.1 3 14 422 433 420 439 0.87 XPA protein N-terminal XPA_N PF01286.18 32 ZNF100-201 - 478 1.2e-17 63.7 53.9 12 12 0.27 2.1e+02 2.0 0.2 5 14 452 461 452 463 0.90 XPA protein N-terminal zf-C2H2_jaz PF12171.8 27 ZNF100-201 - 478 3.1e-17 62.4 56.5 1 11 2.2 1.7e+03 -0.5 1.7 2 11 141 150 140 161 0.86 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF100-201 - 478 3.1e-17 62.4 56.5 2 11 1.8 1.4e+03 -0.3 0.2 4 12 171 179 168 188 0.85 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF100-201 - 478 3.1e-17 62.4 56.5 3 11 0.00045 0.35 11.2 0.2 2 21 197 216 196 217 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF100-201 - 478 3.1e-17 62.4 56.5 4 11 0.00028 0.22 11.9 0.1 2 22 225 245 224 245 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF100-201 - 478 3.1e-17 62.4 56.5 5 11 0.0012 0.92 9.9 0.1 2 20 253 271 252 272 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF100-201 - 478 3.1e-17 62.4 56.5 6 11 0.00036 0.28 11.5 0.3 2 24 281 303 280 304 0.90 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF100-201 - 478 3.1e-17 62.4 56.5 7 11 0.076 59 4.1 1.7 2 24 309 331 308 331 0.87 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF100-201 - 478 3.1e-17 62.4 56.5 8 11 0.0011 0.85 10.0 0.1 2 22 337 357 337 357 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF100-201 - 478 3.1e-17 62.4 56.5 9 11 0.00029 0.22 11.8 0.1 2 20 365 383 364 384 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF100-201 - 478 3.1e-17 62.4 56.5 10 11 0.00012 0.092 13.1 0.1 2 21 393 412 392 412 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF100-201 - 478 3.1e-17 62.4 56.5 11 11 6.2e-05 0.048 14.0 0.3 2 22 421 441 420 443 0.91 Zinc-finger double-stranded RNA-binding Zn-ribbon_8 PF09723.10 40 ZNF100-201 - 478 5.4e-14 52.0 66.2 1 12 0.14 1.1e+02 3.0 0.5 6 15 141 150 113 160 0.86 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF100-201 - 478 5.4e-14 52.0 66.2 2 12 1.4e-05 0.011 15.9 3.8 6 38 169 208 168 209 0.87 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF100-201 - 478 5.4e-14 52.0 66.2 3 12 0.00019 0.15 12.2 6.7 6 37 197 235 196 236 0.85 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF100-201 - 478 5.4e-14 52.0 66.2 4 12 0.00032 0.25 11.5 5.9 6 37 225 263 224 264 0.79 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF100-201 - 478 5.4e-14 52.0 66.2 5 12 0.00027 0.21 11.7 5.6 6 34 253 288 250 290 0.84 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF100-201 - 478 5.4e-14 52.0 66.2 6 12 0.00026 0.2 11.8 6.8 6 35 281 317 279 320 0.86 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF100-201 - 478 5.4e-14 52.0 66.2 7 12 0.0061 4.8 7.4 1.2 6 18 309 321 308 329 0.86 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF100-201 - 478 5.4e-14 52.0 66.2 8 12 0.00012 0.093 12.9 5.3 6 34 337 372 336 375 0.89 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF100-201 - 478 5.4e-14 52.0 66.2 9 12 5.2e-05 0.04 14.0 5.5 6 38 365 404 364 405 0.88 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF100-201 - 478 5.4e-14 52.0 66.2 10 12 3.3e-05 0.026 14.6 4.9 6 38 393 432 391 433 0.86 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF100-201 - 478 5.4e-14 52.0 66.2 11 12 0.002 1.5 9.0 0.6 6 18 421 433 420 442 0.82 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF100-201 - 478 5.4e-14 52.0 66.2 12 12 1 7.8e+02 0.3 0.0 6 17 449 460 448 469 0.74 Zinc ribbon domain zf_UBZ PF18439.1 32 ZNF100-201 - 478 5e-13 48.4 51.4 1 12 0.16 1.2e+02 2.4 1.7 3 21 141 160 139 164 0.76 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF100-201 - 478 5e-13 48.4 51.4 2 12 0.0074 5.8 6.6 0.1 1 12 167 178 167 187 0.85 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF100-201 - 478 5e-13 48.4 51.4 3 12 0.0028 2.1 8.0 0.3 3 20 197 215 195 216 0.78 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF100-201 - 478 5e-13 48.4 51.4 4 12 0.004 3.1 7.5 0.2 3 20 225 243 223 244 0.78 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF100-201 - 478 5e-13 48.4 51.4 5 12 0.009 7 6.3 0.1 3 17 253 268 251 272 0.77 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF100-201 - 478 5e-13 48.4 51.4 6 12 0.001 0.81 9.3 0.2 3 20 281 299 279 300 0.86 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF100-201 - 478 5e-13 48.4 51.4 7 12 0.0088 6.9 6.4 0.1 3 12 309 318 307 325 0.87 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF100-201 - 478 5e-13 48.4 51.4 8 12 0.0091 7.1 6.3 0.1 3 13 337 347 335 356 0.78 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF100-201 - 478 5e-13 48.4 51.4 9 12 0.00049 0.38 10.4 0.2 3 20 365 383 363 384 0.88 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF100-201 - 478 5e-13 48.4 51.4 10 12 0.00086 0.67 9.6 0.1 3 20 393 411 391 412 0.87 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF100-201 - 478 5e-13 48.4 51.4 11 12 0.0035 2.7 7.7 0.1 3 15 421 433 419 440 0.77 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF100-201 - 478 5e-13 48.4 51.4 12 12 8 6.2e+03 -3.1 0.0 6 12 452 458 452 461 0.77 Ubiquitin-Binding Zinc Finger zf-C2H2_11 PF16622.5 29 ZNF100-201 - 478 4.7e-07 29.4 44.2 1 12 7.1 5.5e+03 -2.8 2.5 5 23 141 159 140 162 0.73 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF100-201 - 478 4.7e-07 29.4 44.2 2 12 0.00034 0.27 11.0 0.1 2 26 166 190 165 191 0.89 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF100-201 - 478 4.7e-07 29.4 44.2 3 12 0.06 47 3.9 0.1 5 24 197 216 194 219 0.76 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF100-201 - 478 4.7e-07 29.4 44.2 4 12 0.04 31 4.4 0.2 5 26 225 246 222 247 0.80 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF100-201 - 478 4.7e-07 29.4 44.2 5 12 0.0046 3.6 7.4 0.4 5 26 253 274 252 275 0.90 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF100-201 - 478 4.7e-07 29.4 44.2 6 12 0.06 47 3.9 0.1 5 23 281 299 278 303 0.78 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF100-201 - 478 4.7e-07 29.4 44.2 7 12 0.23 1.8e+02 2.0 0.1 5 14 309 318 306 327 0.85 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF100-201 - 478 4.7e-07 29.4 44.2 8 12 0.0035 2.7 7.8 0.1 5 26 337 358 335 359 0.93 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF100-201 - 478 4.7e-07 29.4 44.2 9 12 0.066 52 3.7 0.0 5 23 365 383 362 387 0.76 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF100-201 - 478 4.7e-07 29.4 44.2 10 12 0.099 77 3.2 0.1 5 20 393 408 390 415 0.73 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF100-201 - 478 4.7e-07 29.4 44.2 11 12 0.0094 7.4 6.4 0.1 5 24 421 440 418 443 0.86 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF100-201 - 478 4.7e-07 29.4 44.2 12 12 1.7 1.3e+03 -0.7 0.0 8 20 452 464 446 466 0.80 zinc-finger C2H2-type # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF100-201.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF100-201.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF100-201.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF100-201.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF100-201.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:59:27 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZNF100-202 - 542 9.6e-88 285.0 99.8 1 13 3.2 2.7e+03 -0.9 0.0 10 24 172 186 170 188 0.74 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF100-202 - 542 9.6e-88 285.0 99.8 2 13 2e-07 0.00017 21.8 6.0 3 24 193 214 191 214 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF100-202 - 542 9.6e-88 285.0 99.8 3 13 2e-07 0.00017 21.8 1.8 1 25 219 243 219 243 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF100-202 - 542 9.6e-88 285.0 99.8 4 13 1.7e-11 1.4e-08 34.7 1.2 2 25 248 271 247 272 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF100-202 - 542 9.6e-88 285.0 99.8 5 13 1.6e-10 1.4e-07 31.6 1.5 1 25 275 299 275 300 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF100-202 - 542 9.6e-88 285.0 99.8 6 13 2.2e-10 1.9e-07 31.2 2.8 1 25 303 327 303 328 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF100-202 - 542 9.6e-88 285.0 99.8 7 13 5.7e-11 4.8e-08 33.1 1.1 1 25 331 355 331 356 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF100-202 - 542 9.6e-88 285.0 99.8 8 13 1.1e-08 9.8e-06 25.8 1.3 2 24 360 382 359 384 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF100-202 - 542 9.6e-88 285.0 99.8 9 13 6.6e-09 5.6e-06 26.5 2.8 2 25 388 411 387 411 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF100-202 - 542 9.6e-88 285.0 99.8 10 13 2.1e-12 1.8e-09 37.6 1.1 1 25 415 439 415 440 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF100-202 - 542 9.6e-88 285.0 99.8 11 13 5.7e-11 4.9e-08 33.1 0.7 1 25 443 467 443 468 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF100-202 - 542 9.6e-88 285.0 99.8 12 13 1.3e-10 1.1e-07 31.9 0.5 2 25 472 495 471 496 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF100-202 - 542 9.6e-88 285.0 99.8 13 13 1e-05 0.0089 16.4 0.2 2 25 500 523 499 524 0.94 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZNF100-202 - 542 7.5e-59 193.0 99.5 1 13 2.1 1.8e+03 -0.3 1.1 6 23 179 199 177 199 0.87 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF100-202 - 542 7.5e-59 193.0 99.5 2 13 0.0019 1.6 9.3 8.5 1 23 205 227 205 227 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF100-202 - 542 7.5e-59 193.0 99.5 3 13 1.2e-06 0.001 19.4 1.0 1 23 233 255 233 255 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF100-202 - 542 7.5e-59 193.0 99.5 4 13 1.2e-08 1e-05 25.7 1.5 1 23 261 283 261 283 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF100-202 - 542 7.5e-59 193.0 99.5 5 13 3.8e-09 3.3e-06 27.3 2.5 1 23 289 311 289 311 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF100-202 - 542 7.5e-59 193.0 99.5 6 13 8.5e-09 7.3e-06 26.2 2.1 1 23 317 339 317 339 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF100-202 - 542 7.5e-59 193.0 99.5 7 13 2.7e-08 2.3e-05 24.6 0.7 1 23 345 367 345 367 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF100-202 - 542 7.5e-59 193.0 99.5 8 13 5.8e-07 0.00049 20.4 2.7 1 23 373 395 373 395 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF100-202 - 542 7.5e-59 193.0 99.5 9 13 9.1e-07 0.00078 19.8 0.3 1 23 401 423 401 423 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF100-202 - 542 7.5e-59 193.0 99.5 10 13 4.7e-08 4e-05 23.8 0.4 1 23 429 451 429 451 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF100-202 - 542 7.5e-59 193.0 99.5 11 13 6.6e-09 5.6e-06 26.5 0.4 1 23 457 479 457 479 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF100-202 - 542 7.5e-59 193.0 99.5 12 13 5.8e-09 4.9e-06 26.7 1.1 1 23 485 507 485 507 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF100-202 - 542 7.5e-59 193.0 99.5 13 13 0.42 3.6e+02 1.9 0.0 5 17 517 529 516 530 0.81 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZNF100-202 - 542 2.2e-29 99.6 89.5 1 12 0.012 10 7.2 6.7 1 23 205 227 205 228 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF100-202 - 542 2.2e-29 99.6 89.5 2 12 0.00087 0.74 10.8 0.7 1 23 233 255 233 256 0.91 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF100-202 - 542 2.2e-29 99.6 89.5 3 12 2.7e-05 0.023 15.5 1.1 1 23 261 283 261 284 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF100-202 - 542 2.2e-29 99.6 89.5 4 12 2.4e-05 0.021 15.6 1.6 1 23 289 311 289 312 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF100-202 - 542 2.2e-29 99.6 89.5 5 12 2e-05 0.017 15.9 1.2 1 23 317 339 317 340 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF100-202 - 542 2.2e-29 99.6 89.5 6 12 8e-06 0.0068 17.2 0.3 1 23 345 367 345 368 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF100-202 - 542 2.2e-29 99.6 89.5 7 12 0.00061 0.52 11.3 2.1 1 23 373 395 373 396 0.91 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF100-202 - 542 2.2e-29 99.6 89.5 8 12 0.00016 0.13 13.1 0.4 1 23 401 423 401 424 0.90 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF100-202 - 542 2.2e-29 99.6 89.5 9 12 4.6e-05 0.04 14.8 0.3 1 23 429 451 429 452 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF100-202 - 542 2.2e-29 99.6 89.5 10 12 2.5e-05 0.021 15.6 0.3 1 23 457 479 457 480 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF100-202 - 542 2.2e-29 99.6 89.5 11 12 4.4e-06 0.0037 18.0 0.8 1 23 485 507 485 508 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF100-202 - 542 2.2e-29 99.6 89.5 12 12 3.5 3e+03 -0.4 0.0 5 16 517 528 516 530 0.76 C2H2-type zinc finger KRAB PF01352.27 42 ZNF100-202 - 542 8.3e-22 76.6 0.2 1 1 1.8e-24 1.5e-21 75.7 0.2 1 41 34 74 34 74 0.98 KRAB box zf-C2H2_6 PF13912.6 27 ZNF100-202 - 542 2.1e-21 75.4 99.9 1 13 2.7 2.3e+03 -1.2 0.7 9 24 184 199 183 202 0.80 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF100-202 - 542 2.1e-21 75.4 99.9 2 13 0.024 21 5.3 6.7 2 24 205 227 205 228 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF100-202 - 542 2.1e-21 75.4 99.9 3 13 0.00079 0.68 10.0 0.5 2 24 233 255 232 258 0.92 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF100-202 - 542 2.1e-21 75.4 99.9 4 13 0.00016 0.14 12.2 1.3 2 24 261 283 261 286 0.92 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF100-202 - 542 2.1e-21 75.4 99.9 5 13 0.00012 0.1 12.6 1.8 2 24 289 311 289 313 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF100-202 - 542 2.1e-21 75.4 99.9 6 13 4.1e-05 0.035 14.1 1.0 2 24 317 339 317 342 0.91 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF100-202 - 542 2.1e-21 75.4 99.9 7 13 3.6e-05 0.031 14.3 0.9 2 24 345 367 345 370 0.96 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF100-202 - 542 2.1e-21 75.4 99.9 8 13 0.00014 0.12 12.4 3.6 2 24 373 395 373 398 0.95 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF100-202 - 542 2.1e-21 75.4 99.9 9 13 4.6e-05 0.039 13.9 1.0 2 24 401 423 400 426 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF100-202 - 542 2.1e-21 75.4 99.9 10 13 0.00016 0.14 12.2 0.8 2 21 429 448 429 452 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF100-202 - 542 2.1e-21 75.4 99.9 11 13 3.5e-05 0.03 14.3 0.5 2 21 457 476 457 480 0.91 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF100-202 - 542 2.1e-21 75.4 99.9 12 13 1.4e-05 0.012 15.6 1.3 2 24 485 507 485 510 0.95 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF100-202 - 542 2.1e-21 75.4 99.9 13 13 8.7 7.4e+03 -2.9 0.1 6 12 517 523 517 523 0.86 C2H2-type zinc finger zf-C2H2_jaz PF12171.8 27 ZNF100-202 - 542 1.9e-17 63.0 53.7 1 11 2.3 2e+03 -0.7 1.7 2 11 205 214 204 225 0.86 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF100-202 - 542 1.9e-17 63.0 53.7 2 11 1.9 1.6e+03 -0.5 0.2 4 12 235 243 232 252 0.85 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF100-202 - 542 1.9e-17 63.0 53.7 3 11 0.00048 0.41 11.0 0.2 2 21 261 280 260 281 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF100-202 - 542 1.9e-17 63.0 53.7 4 11 0.0003 0.25 11.7 0.1 2 22 289 309 288 309 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF100-202 - 542 1.9e-17 63.0 53.7 5 11 0.0013 1.1 9.7 0.1 2 20 317 335 316 336 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF100-202 - 542 1.9e-17 63.0 53.7 6 11 0.00038 0.33 11.3 0.3 2 24 345 367 344 368 0.90 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF100-202 - 542 1.9e-17 63.0 53.7 7 11 0.08 69 3.9 1.7 2 24 373 395 372 395 0.87 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF100-202 - 542 1.9e-17 63.0 53.7 8 11 0.0012 0.98 9.8 0.1 2 22 401 421 401 421 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF100-202 - 542 1.9e-17 63.0 53.7 9 11 0.0003 0.26 11.6 0.1 2 20 429 447 428 448 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF100-202 - 542 1.9e-17 63.0 53.7 10 11 0.00013 0.11 12.9 0.1 2 21 457 476 456 476 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF100-202 - 542 1.9e-17 63.0 53.7 11 11 6.5e-05 0.056 13.8 0.3 2 22 485 505 484 507 0.91 Zinc-finger double-stranded RNA-binding XPA_N PF01286.18 32 ZNF100-202 - 542 6e-17 61.4 53.9 1 12 0.8 6.8e+02 0.4 3.9 3 12 206 215 204 216 0.91 XPA protein N-terminal XPA_N PF01286.18 32 ZNF100-202 - 542 6e-17 61.4 53.9 2 12 0.079 68 3.6 0.1 3 11 234 242 233 244 0.90 XPA protein N-terminal XPA_N PF01286.18 32 ZNF100-202 - 542 6e-17 61.4 53.9 3 12 0.00065 0.55 10.3 0.1 3 15 262 274 260 280 0.82 XPA protein N-terminal XPA_N PF01286.18 32 ZNF100-202 - 542 6e-17 61.4 53.9 4 12 0.0011 0.91 9.6 0.1 3 15 290 302 288 308 0.82 XPA protein N-terminal XPA_N PF01286.18 32 ZNF100-202 - 542 6e-17 61.4 53.9 5 12 0.0023 2 8.5 0.1 3 15 318 330 316 336 0.82 XPA protein N-terminal XPA_N PF01286.18 32 ZNF100-202 - 542 6e-17 61.4 53.9 6 12 0.00045 0.38 10.8 0.2 3 14 346 357 344 364 0.86 XPA protein N-terminal XPA_N PF01286.18 32 ZNF100-202 - 542 6e-17 61.4 53.9 7 12 0.002 1.7 8.8 0.2 3 17 374 389 372 391 0.76 XPA protein N-terminal XPA_N PF01286.18 32 ZNF100-202 - 542 6e-17 61.4 53.9 8 12 0.0052 4.4 7.4 0.1 3 14 402 413 401 418 0.87 XPA protein N-terminal XPA_N PF01286.18 32 ZNF100-202 - 542 6e-17 61.4 53.9 9 12 0.00067 0.57 10.3 0.2 3 14 430 441 428 447 0.88 XPA protein N-terminal XPA_N PF01286.18 32 ZNF100-202 - 542 6e-17 61.4 53.9 10 12 0.00086 0.73 9.9 0.1 3 14 458 469 456 474 0.89 XPA protein N-terminal XPA_N PF01286.18 32 ZNF100-202 - 542 6e-17 61.4 53.9 11 12 0.001 0.89 9.7 0.1 3 14 486 497 484 503 0.87 XPA protein N-terminal XPA_N PF01286.18 32 ZNF100-202 - 542 6e-17 61.4 53.9 12 12 0.29 2.5e+02 1.8 0.2 5 14 516 525 516 527 0.90 XPA protein N-terminal Zn-ribbon_8 PF09723.10 40 ZNF100-202 - 542 1.2e-13 50.9 65.4 1 12 0.15 1.3e+02 2.8 0.5 6 15 205 214 177 224 0.86 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF100-202 - 542 1.2e-13 50.9 65.4 2 12 7.3e-06 0.0062 16.6 2.9 6 38 233 272 232 274 0.87 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF100-202 - 542 1.2e-13 50.9 65.4 3 12 0.00012 0.099 12.8 6.2 6 38 261 300 260 302 0.86 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF100-202 - 542 1.2e-13 50.9 65.4 4 12 0.00025 0.22 11.7 5.5 6 37 289 327 287 328 0.79 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF100-202 - 542 1.2e-13 50.9 65.4 5 12 0.00098 0.84 9.8 5.5 6 33 317 351 314 351 0.84 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF100-202 - 542 1.2e-13 50.9 65.4 6 12 0.0003 0.25 11.5 7.1 6 35 345 381 343 385 0.86 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF100-202 - 542 1.2e-13 50.9 65.4 7 12 0.0063 5.4 7.2 1.2 6 18 373 385 371 393 0.86 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF100-202 - 542 1.2e-13 50.9 65.4 8 12 0.00022 0.19 11.9 6.2 6 34 401 436 400 440 0.89 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF100-202 - 542 1.2e-13 50.9 65.4 9 12 4.9e-05 0.042 14.0 5.4 6 38 429 468 428 470 0.88 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF100-202 - 542 1.2e-13 50.9 65.4 10 12 4.6e-05 0.04 14.1 5.3 6 38 457 496 456 497 0.86 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF100-202 - 542 1.2e-13 50.9 65.4 11 12 0.0022 1.9 8.7 0.7 6 18 485 497 483 506 0.83 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF100-202 - 542 1.2e-13 50.9 65.4 12 12 1.1 9e+02 0.1 0.0 6 17 513 524 512 533 0.74 Zinc ribbon domain zf_UBZ PF18439.1 32 ZNF100-202 - 542 2.4e-12 46.2 51.4 1 12 0.17 1.4e+02 2.2 1.7 3 21 205 224 203 228 0.76 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF100-202 - 542 2.4e-12 46.2 51.4 2 12 0.0078 6.7 6.4 0.1 1 12 231 242 231 251 0.85 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF100-202 - 542 2.4e-12 46.2 51.4 3 12 0.0029 2.5 7.8 0.3 3 20 261 279 259 280 0.78 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF100-202 - 542 2.4e-12 46.2 51.4 4 12 0.0042 3.6 7.3 0.2 3 20 289 307 287 308 0.78 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF100-202 - 542 2.4e-12 46.2 51.4 5 12 0.0095 8.1 6.1 0.1 3 17 317 332 315 336 0.77 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF100-202 - 542 2.4e-12 46.2 51.4 6 12 0.0011 0.93 9.1 0.2 3 20 345 363 343 364 0.86 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF100-202 - 542 2.4e-12 46.2 51.4 7 12 0.0093 7.9 6.2 0.1 3 12 373 382 371 389 0.87 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF100-202 - 542 2.4e-12 46.2 51.4 8 12 0.0095 8.1 6.1 0.1 3 13 401 411 399 420 0.78 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF100-202 - 542 2.4e-12 46.2 51.4 9 12 0.00052 0.44 10.2 0.2 3 20 429 447 427 448 0.88 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF100-202 - 542 2.4e-12 46.2 51.4 10 12 0.00091 0.78 9.4 0.1 3 20 457 475 455 476 0.87 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF100-202 - 542 2.4e-12 46.2 51.4 11 12 0.0037 3.1 7.5 0.1 3 15 485 497 483 504 0.77 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF100-202 - 542 2.4e-12 46.2 51.4 12 12 8.4 7.2e+03 -3.3 0.0 6 12 516 522 516 525 0.77 Ubiquitin-Binding Zinc Finger # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF100-202.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF100-202.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF100-202.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF100-202.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF100-202.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:59:27 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF100-203.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF100-203.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF100-203.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF100-203.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF100-203.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:59:28 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF100-204.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF100-204.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF100-204.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF100-204.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF100-204.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:59:28 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF100-205.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF100-205.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF100-205.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF100-205.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF100-205.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:59:29 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZNF100-206 - 566 7.6e-94 304.3 108.7 1 14 2.9 2.9e+03 -1.0 0.0 10 24 171 185 169 187 0.74 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF100-206 - 566 7.6e-94 304.3 108.7 2 14 1.8e-07 0.00018 21.8 6.0 3 24 192 213 190 213 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF100-206 - 566 7.6e-94 304.3 108.7 3 14 1.8e-07 0.00018 21.8 1.8 1 25 218 242 218 242 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF100-206 - 566 7.6e-94 304.3 108.7 4 14 1.5e-11 1.5e-08 34.7 1.2 2 25 247 270 246 271 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF100-206 - 566 7.6e-94 304.3 108.7 5 14 1.5e-10 1.4e-07 31.6 1.5 1 25 274 298 274 299 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF100-206 - 566 7.6e-94 304.3 108.7 6 14 2e-10 2e-07 31.1 2.8 1 25 302 326 302 327 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF100-206 - 566 7.6e-94 304.3 108.7 7 14 5.1e-11 5.1e-08 33.0 1.1 1 25 330 354 330 355 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF100-206 - 566 7.6e-94 304.3 108.7 8 14 1e-08 1e-05 25.7 1.3 2 24 359 381 358 383 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF100-206 - 566 7.6e-94 304.3 108.7 9 14 6e-09 5.9e-06 26.5 2.8 2 25 387 410 386 410 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF100-206 - 566 7.6e-94 304.3 108.7 10 14 1.9e-12 1.9e-09 37.5 1.1 1 25 414 438 414 439 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF100-206 - 566 7.6e-94 304.3 108.7 11 14 5.1e-11 5.1e-08 33.0 0.7 1 25 442 466 442 467 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF100-206 - 566 7.6e-94 304.3 108.7 12 14 1.2e-10 1.2e-07 31.9 0.5 2 25 471 494 470 495 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF100-206 - 566 7.6e-94 304.3 108.7 13 14 9.4e-06 0.0093 16.4 0.2 2 25 499 522 498 523 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF100-206 - 566 7.6e-94 304.3 108.7 14 14 7.9e-09 7.9e-06 26.1 1.5 8 24 531 547 528 549 0.88 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZNF100-206 - 566 1.8e-61 201.3 107.5 1 14 1.9 1.9e+03 -0.4 1.1 6 23 178 198 176 198 0.87 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF100-206 - 566 1.8e-61 201.3 107.5 2 14 0.0017 1.7 9.2 8.5 1 23 204 226 204 226 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF100-206 - 566 1.8e-61 201.3 107.5 3 14 1.1e-06 0.0011 19.3 1.0 1 23 232 254 232 254 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF100-206 - 566 1.8e-61 201.3 107.5 4 14 1.1e-08 1.1e-05 25.6 1.5 1 23 260 282 260 282 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF100-206 - 566 1.8e-61 201.3 107.5 5 14 3.5e-09 3.5e-06 27.2 2.5 1 23 288 310 288 310 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF100-206 - 566 1.8e-61 201.3 107.5 6 14 7.7e-09 7.6e-06 26.1 2.1 1 23 316 338 316 338 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF100-206 - 566 1.8e-61 201.3 107.5 7 14 2.4e-08 2.4e-05 24.5 0.7 1 23 344 366 344 366 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF100-206 - 566 1.8e-61 201.3 107.5 8 14 5.2e-07 0.00052 20.3 2.7 1 23 372 394 372 394 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF100-206 - 566 1.8e-61 201.3 107.5 9 14 8.2e-07 0.00082 19.7 0.3 1 23 400 422 400 422 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF100-206 - 566 1.8e-61 201.3 107.5 10 14 4.2e-08 4.2e-05 23.8 0.4 1 23 428 450 428 450 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF100-206 - 566 1.8e-61 201.3 107.5 11 14 6e-09 5.9e-06 26.4 0.4 1 23 456 478 456 478 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF100-206 - 566 1.8e-61 201.3 107.5 12 14 5.2e-09 5.2e-06 26.6 1.1 1 23 484 506 484 506 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF100-206 - 566 1.8e-61 201.3 107.5 13 14 0.38 3.8e+02 1.9 0.0 5 17 516 528 515 529 0.81 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF100-206 - 566 1.8e-61 201.3 107.5 14 14 3.2e-05 0.032 14.7 1.0 1 18 538 555 538 555 0.95 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZNF100-206 - 566 2.8e-29 99.2 97.2 1 13 0.011 11 7.2 6.7 1 23 204 226 204 227 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF100-206 - 566 2.8e-29 99.2 97.2 2 13 0.00079 0.78 10.7 0.7 1 23 232 254 232 255 0.91 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF100-206 - 566 2.8e-29 99.2 97.2 3 13 2.4e-05 0.024 15.4 1.1 1 23 260 282 260 283 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF100-206 - 566 2.8e-29 99.2 97.2 4 13 2.2e-05 0.022 15.6 1.6 1 23 288 310 288 311 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF100-206 - 566 2.8e-29 99.2 97.2 5 13 1.8e-05 0.018 15.8 1.2 1 23 316 338 316 339 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF100-206 - 566 2.8e-29 99.2 97.2 6 13 7.2e-06 0.0072 17.1 0.3 1 23 344 366 344 367 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF100-206 - 566 2.8e-29 99.2 97.2 7 13 0.00055 0.55 11.2 2.1 1 23 372 394 372 395 0.91 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF100-206 - 566 2.8e-29 99.2 97.2 8 13 0.00014 0.14 13.1 0.4 1 23 400 422 400 423 0.90 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF100-206 - 566 2.8e-29 99.2 97.2 9 13 4.2e-05 0.042 14.7 0.3 1 23 428 450 428 451 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF100-206 - 566 2.8e-29 99.2 97.2 10 13 2.3e-05 0.023 15.5 0.3 1 23 456 478 456 479 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF100-206 - 566 2.8e-29 99.2 97.2 11 13 3.9e-06 0.0039 17.9 0.8 1 23 484 506 484 507 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF100-206 - 566 2.8e-29 99.2 97.2 12 13 2.7 2.7e+03 -0.3 0.0 5 16 516 527 515 532 0.77 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF100-206 - 566 2.8e-29 99.2 97.2 13 13 0.025 25 6.0 0.6 1 16 538 553 538 555 0.82 C2H2-type zinc finger KRAB PF01352.27 42 ZNF100-206 - 566 9.2e-23 79.6 0.1 1 1 1.7e-25 1.7e-22 78.8 0.1 1 42 34 75 34 75 0.98 KRAB box zf-C2H2_6 PF13912.6 27 ZNF100-206 - 566 6.1e-20 70.7 109.0 1 14 2.4 2.4e+03 -1.3 0.7 9 24 183 198 182 201 0.80 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF100-206 - 566 6.1e-20 70.7 109.0 2 14 0.022 22 5.2 6.7 2 24 204 226 204 227 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF100-206 - 566 6.1e-20 70.7 109.0 3 14 0.00071 0.71 9.9 0.5 2 24 232 254 231 257 0.92 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF100-206 - 566 6.1e-20 70.7 109.0 4 14 0.00014 0.14 12.2 1.3 2 24 260 282 260 285 0.92 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF100-206 - 566 6.1e-20 70.7 109.0 5 14 0.00011 0.11 12.6 1.8 2 24 288 310 288 312 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF100-206 - 566 6.1e-20 70.7 109.0 6 14 3.7e-05 0.037 14.0 1.0 2 24 316 338 316 341 0.91 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF100-206 - 566 6.1e-20 70.7 109.0 7 14 3.3e-05 0.033 14.2 0.9 2 24 344 366 344 369 0.96 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF100-206 - 566 6.1e-20 70.7 109.0 8 14 0.00013 0.13 12.3 3.6 2 24 372 394 372 397 0.95 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF100-206 - 566 6.1e-20 70.7 109.0 9 14 4.2e-05 0.042 13.9 1.0 2 24 400 422 399 425 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF100-206 - 566 6.1e-20 70.7 109.0 10 14 0.00014 0.14 12.2 0.8 2 21 428 447 428 451 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF100-206 - 566 6.1e-20 70.7 109.0 11 14 3.2e-05 0.032 14.2 0.5 2 21 456 475 456 479 0.91 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF100-206 - 566 6.1e-20 70.7 109.0 12 14 1.3e-05 0.013 15.5 1.3 2 24 484 506 484 509 0.95 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF100-206 - 566 6.1e-20 70.7 109.0 13 14 7.8 7.8e+03 -2.9 0.1 6 12 516 522 516 522 0.86 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF100-206 - 566 6.1e-20 70.7 109.0 14 14 0.23 2.3e+02 1.9 1.7 2 11 538 547 538 548 0.95 C2H2-type zinc finger XPA_N PF01286.18 32 ZNF100-206 - 566 3.3e-18 65.4 58.8 1 13 0.72 7.1e+02 0.4 3.9 3 12 205 214 203 215 0.91 XPA protein N-terminal XPA_N PF01286.18 32 ZNF100-206 - 566 3.3e-18 65.4 58.8 2 13 0.071 71 3.6 0.1 3 11 233 241 232 243 0.90 XPA protein N-terminal XPA_N PF01286.18 32 ZNF100-206 - 566 3.3e-18 65.4 58.8 3 13 0.00058 0.58 10.2 0.1 3 15 261 273 259 279 0.82 XPA protein N-terminal XPA_N PF01286.18 32 ZNF100-206 - 566 3.3e-18 65.4 58.8 4 13 0.00096 0.96 9.5 0.1 3 15 289 301 287 307 0.82 XPA protein N-terminal XPA_N PF01286.18 32 ZNF100-206 - 566 3.3e-18 65.4 58.8 5 13 0.0021 2.1 8.5 0.1 3 15 317 329 315 335 0.82 XPA protein N-terminal XPA_N PF01286.18 32 ZNF100-206 - 566 3.3e-18 65.4 58.8 6 13 0.0004 0.4 10.8 0.2 3 14 345 356 343 363 0.86 XPA protein N-terminal XPA_N PF01286.18 32 ZNF100-206 - 566 3.3e-18 65.4 58.8 7 13 0.0018 1.8 8.7 0.2 3 17 373 388 371 390 0.76 XPA protein N-terminal XPA_N PF01286.18 32 ZNF100-206 - 566 3.3e-18 65.4 58.8 8 13 0.0047 4.6 7.4 0.1 3 14 401 412 400 417 0.87 XPA protein N-terminal XPA_N PF01286.18 32 ZNF100-206 - 566 3.3e-18 65.4 58.8 9 13 0.0006 0.6 10.2 0.2 3 14 429 440 427 446 0.88 XPA protein N-terminal XPA_N PF01286.18 32 ZNF100-206 - 566 3.3e-18 65.4 58.8 10 13 0.00077 0.77 9.9 0.1 3 14 457 468 455 473 0.89 XPA protein N-terminal XPA_N PF01286.18 32 ZNF100-206 - 566 3.3e-18 65.4 58.8 11 13 0.00094 0.94 9.6 0.1 3 14 485 496 483 502 0.87 XPA protein N-terminal XPA_N PF01286.18 32 ZNF100-206 - 566 3.3e-18 65.4 58.8 12 13 0.26 2.6e+02 1.8 0.2 5 14 515 524 515 526 0.90 XPA protein N-terminal XPA_N PF01286.18 32 ZNF100-206 - 566 3.3e-18 65.4 58.8 13 13 0.0029 2.8 8.0 0.2 3 14 539 550 537 555 0.88 XPA protein N-terminal zf-C2H2_jaz PF12171.8 27 ZNF100-206 - 566 1.6e-15 56.9 59.8 1 12 2.4 2.4e+03 -1.0 1.7 2 11 204 213 203 223 0.90 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF100-206 - 566 1.6e-15 56.9 59.8 2 12 1.7 1.7e+03 -0.5 0.2 4 12 234 242 231 251 0.85 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF100-206 - 566 1.6e-15 56.9 59.8 3 12 0.00043 0.43 10.9 0.2 2 21 260 279 259 280 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF100-206 - 566 1.6e-15 56.9 59.8 4 12 0.00027 0.27 11.6 0.1 2 22 288 308 287 308 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF100-206 - 566 1.6e-15 56.9 59.8 5 12 0.0011 1.1 9.6 0.1 2 20 316 334 315 335 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF100-206 - 566 1.6e-15 56.9 59.8 6 12 0.00035 0.34 11.2 0.3 2 24 344 366 343 367 0.90 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF100-206 - 566 1.6e-15 56.9 59.8 7 12 0.073 72 3.8 1.7 2 24 372 394 371 394 0.87 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF100-206 - 566 1.6e-15 56.9 59.8 8 12 0.001 1 9.7 0.1 2 22 400 420 400 420 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF100-206 - 566 1.6e-15 56.9 59.8 9 12 0.00027 0.27 11.6 0.1 2 20 428 446 427 447 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF100-206 - 566 1.6e-15 56.9 59.8 10 12 0.00011 0.11 12.8 0.1 2 21 456 475 455 475 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF100-206 - 566 1.6e-15 56.9 59.8 11 12 5.9e-05 0.059 13.7 0.3 2 22 484 504 483 506 0.91 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF100-206 - 566 1.6e-15 56.9 59.8 12 12 8.2 8.2e+03 -2.7 0.3 2 11 538 547 537 553 0.82 Zinc-finger double-stranded RNA-binding Zn-ribbon_8 PF09723.10 40 ZNF100-206 - 566 1.4e-14 53.9 72.0 1 13 0.13 1.3e+02 2.8 0.5 6 15 204 213 176 223 0.86 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF100-206 - 566 1.4e-14 53.9 72.0 2 13 7.4e-06 0.0074 16.4 3.1 6 38 232 271 231 273 0.87 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF100-206 - 566 1.4e-14 53.9 72.0 3 13 0.00012 0.12 12.5 6.3 6 38 260 299 259 300 0.86 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF100-206 - 566 1.4e-14 53.9 72.0 4 13 0.00027 0.26 11.4 5.7 6 37 288 326 286 327 0.79 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF100-206 - 566 1.4e-14 53.9 72.0 5 13 0.00021 0.2 11.8 5.6 6 35 316 352 314 355 0.83 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF100-206 - 566 1.4e-14 53.9 72.0 6 13 0.00026 0.26 11.4 7.0 6 35 344 380 343 384 0.86 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF100-206 - 566 1.4e-14 53.9 72.0 7 13 0.0058 5.8 7.1 1.2 6 18 372 384 370 392 0.86 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF100-206 - 566 1.4e-14 53.9 72.0 8 13 0.00014 0.14 12.3 5.7 6 34 400 435 399 439 0.89 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF100-206 - 566 1.4e-14 53.9 72.0 9 13 4.6e-05 0.046 13.8 5.4 6 38 428 467 427 468 0.88 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF100-206 - 566 1.4e-14 53.9 72.0 10 13 3.4e-05 0.034 14.2 5.0 6 38 456 495 454 496 0.86 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF100-206 - 566 1.4e-14 53.9 72.0 11 13 0.0019 1.8 8.7 0.6 6 18 484 496 482 505 0.83 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF100-206 - 566 1.4e-14 53.9 72.0 12 13 0.0019 1.8 8.7 1.3 7 34 513 545 511 548 0.78 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF100-206 - 566 1.4e-14 53.9 72.0 13 13 0.0071 7.1 6.8 0.6 6 16 538 548 536 555 0.87 Zinc ribbon domain zf_UBZ PF18439.1 32 ZNF100-206 - 566 3.7e-13 48.8 56.2 1 13 0.15 1.5e+02 2.1 1.7 3 21 204 223 202 227 0.76 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF100-206 - 566 3.7e-13 48.8 56.2 2 13 0.007 7 6.3 0.1 1 12 230 241 230 250 0.85 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF100-206 - 566 3.7e-13 48.8 56.2 3 13 0.0026 2.6 7.7 0.3 3 20 260 278 258 279 0.78 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF100-206 - 566 3.7e-13 48.8 56.2 4 13 0.0038 3.8 7.2 0.2 3 20 288 306 286 307 0.78 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF100-206 - 566 3.7e-13 48.8 56.2 5 13 0.0086 8.5 6.1 0.1 3 17 316 331 314 335 0.77 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF100-206 - 566 3.7e-13 48.8 56.2 6 13 0.00099 0.98 9.1 0.2 3 20 344 362 342 363 0.86 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF100-206 - 566 3.7e-13 48.8 56.2 7 13 0.0083 8.3 6.1 0.1 3 12 372 381 370 388 0.87 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF100-206 - 566 3.7e-13 48.8 56.2 8 13 0.0086 8.6 6.1 0.1 3 13 400 410 398 419 0.78 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF100-206 - 566 3.7e-13 48.8 56.2 9 13 0.00047 0.46 10.1 0.2 3 20 428 446 426 447 0.88 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF100-206 - 566 3.7e-13 48.8 56.2 10 13 0.00082 0.82 9.3 0.1 3 20 456 474 454 475 0.87 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF100-206 - 566 3.7e-13 48.8 56.2 11 13 0.0033 3.3 7.4 0.1 3 15 484 496 482 503 0.77 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF100-206 - 566 3.7e-13 48.8 56.2 12 13 7.5 7.5e+03 -3.4 0.0 6 12 515 521 515 524 0.77 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF100-206 - 566 3.7e-13 48.8 56.2 13 13 0.0063 6.3 6.5 0.1 3 14 538 549 536 553 0.84 Ubiquitin-Binding Zinc Finger # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF100-206.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF100-206.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF100-206.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF100-206.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF100-206.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:59:29 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZNF101-201 - 436 6.1e-48 159.2 94.1 1 12 9.5e-05 0.12 12.8 1.1 7 25 94 112 90 113 0.85 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF101-201 - 436 6.1e-48 159.2 94.1 2 12 0.15 1.9e+02 2.7 0.3 2 17 117 132 117 133 0.85 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF101-201 - 436 6.1e-48 159.2 94.1 3 12 7e-06 0.0089 16.4 0.5 10 26 164 180 159 180 0.88 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF101-201 - 436 6.1e-48 159.2 94.1 4 12 0.00017 0.21 12.1 0.7 5 17 187 199 184 201 0.90 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF101-201 - 436 6.1e-48 159.2 94.1 5 12 5.4e-07 0.00069 19.9 3.8 3 22 213 232 212 232 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF101-201 - 436 6.1e-48 159.2 94.1 6 12 6.3e-11 8.1e-08 32.4 1.1 5 25 243 263 240 264 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF101-201 - 436 6.1e-48 159.2 94.1 7 12 0.0018 2.3 8.8 2.7 2 23 268 290 267 293 0.88 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF101-201 - 436 6.1e-48 159.2 94.1 8 12 3.7e-07 0.00048 20.4 3.7 2 25 297 320 296 321 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF101-201 - 436 6.1e-48 159.2 94.1 9 12 1.2e-10 1.5e-07 31.5 0.6 1 25 324 348 324 349 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF101-201 - 436 6.1e-48 159.2 94.1 10 12 8.9e-10 1.1e-06 28.7 2.9 2 24 353 375 353 376 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF101-201 - 436 6.1e-48 159.2 94.1 11 12 1.5e-10 1.9e-07 31.2 1.0 1 25 380 404 380 405 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF101-201 - 436 6.1e-48 159.2 94.1 12 12 1.6 2.1e+03 -0.5 0.3 2 9 409 416 408 421 0.87 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZNF101-201 - 436 1.8e-32 110.0 85.1 1 10 5e-05 0.065 13.7 4.6 2 23 103 124 102 124 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF101-201 - 436 1.8e-32 110.0 85.1 2 10 9.1e-09 1.2e-05 25.5 0.4 1 23 169 191 169 191 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF101-201 - 436 1.8e-32 110.0 85.1 3 10 0.16 2.1e+02 2.7 0.3 8 23 204 219 197 219 0.85 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF101-201 - 436 1.8e-32 110.0 85.1 4 10 3.7e-07 0.00047 20.5 0.3 1 23 225 247 225 247 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF101-201 - 436 1.8e-32 110.0 85.1 5 10 5.1e-07 0.00065 20.0 0.3 1 23 253 276 253 276 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF101-201 - 436 1.8e-32 110.0 85.1 6 10 0.0022 2.8 8.6 7.3 1 23 282 304 282 304 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF101-201 - 436 1.8e-32 110.0 85.1 7 10 0.00019 0.25 11.9 1.1 1 23 310 332 310 332 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF101-201 - 436 1.8e-32 110.0 85.1 8 10 4.2e-07 0.00054 20.3 6.2 1 23 338 360 338 360 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF101-201 - 436 1.8e-32 110.0 85.1 9 10 4.2e-05 0.054 14.0 1.7 1 23 366 388 366 388 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF101-201 - 436 1.8e-32 110.0 85.1 10 10 7.1e-07 0.00091 19.6 1.7 1 23 394 416 394 416 0.97 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZNF101-201 - 436 2.9e-29 99.2 75.2 1 9 5.2e-06 0.0066 17.2 3.6 2 23 103 124 102 125 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF101-201 - 436 2.9e-29 99.2 75.2 2 9 1.5e-06 0.0019 18.9 0.4 1 23 169 191 169 192 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF101-201 - 436 2.9e-29 99.2 75.2 3 9 8.1e-05 0.1 13.5 0.3 1 23 225 247 225 248 0.87 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF101-201 - 436 2.9e-29 99.2 75.2 4 9 4.9e-06 0.0062 17.3 0.3 1 24 253 276 253 276 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF101-201 - 436 2.9e-29 99.2 75.2 5 9 0.00014 0.18 12.7 6.9 1 23 282 304 282 305 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF101-201 - 436 2.9e-29 99.2 75.2 6 9 5.3e-06 0.0068 17.2 1.6 1 23 310 332 310 333 0.97 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF101-201 - 436 2.9e-29 99.2 75.2 7 9 7.6e-06 0.0098 16.7 4.6 1 23 338 360 338 361 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF101-201 - 436 2.9e-29 99.2 75.2 8 9 0.00022 0.28 12.1 1.8 1 23 366 388 366 389 0.88 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF101-201 - 436 2.9e-29 99.2 75.2 9 9 2.3e-05 0.03 15.2 1.1 3 23 396 416 394 417 0.84 C2H2-type zinc finger KRAB PF01352.27 42 ZNF101-201 - 436 4.5e-24 83.8 0.1 1 1 5.9e-27 7.5e-24 83.1 0.1 1 42 3 44 3 44 0.99 KRAB box zf-C2H2_6 PF13912.6 27 ZNF101-201 - 436 8.7e-08 32.0 77.2 1 9 0.0054 7 6.8 2.3 3 11 103 111 103 125 0.83 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF101-201 - 436 8.7e-08 32.0 77.2 2 9 5.1e-05 0.065 13.3 0.4 2 13 169 180 169 181 0.96 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF101-201 - 436 8.7e-08 32.0 77.2 3 9 0.01 13 5.9 1.5 1 9 224 232 224 232 0.92 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF101-201 - 436 8.7e-08 32.0 77.2 4 9 0.00019 0.25 11.4 0.6 2 24 253 276 253 277 0.87 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF101-201 - 436 8.7e-08 32.0 77.2 5 9 0.2 2.5e+02 1.8 5.9 2 24 282 304 281 306 0.75 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF101-201 - 436 8.7e-08 32.0 77.2 6 9 0.00029 0.37 10.8 1.1 2 24 310 332 309 335 0.91 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF101-201 - 436 8.7e-08 32.0 77.2 7 9 0.004 5.1 7.2 7.0 2 25 338 361 338 363 0.90 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF101-201 - 436 8.7e-08 32.0 77.2 8 9 0.0052 6.6 6.9 1.3 2 24 366 388 366 391 0.82 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF101-201 - 436 8.7e-08 32.0 77.2 9 9 0.001 1.3 9.1 0.7 2 24 394 416 394 418 0.74 C2H2-type zinc finger zf-C2H2_jaz PF12171.8 27 ZNF101-201 - 436 4.6e-07 30.0 48.8 1 9 0.00086 1.1 9.6 0.1 4 22 104 122 103 122 0.95 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF101-201 - 436 4.6e-07 30.0 48.8 2 9 8.5e-07 0.0011 19.2 0.2 2 24 169 191 168 191 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF101-201 - 436 4.6e-07 30.0 48.8 3 9 0.055 70 3.9 0.2 2 23 225 246 224 247 0.80 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF101-201 - 436 4.6e-07 30.0 48.8 4 9 0.00032 0.4 11.0 0.0 2 21 253 272 252 273 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF101-201 - 436 4.6e-07 30.0 48.8 5 9 0.66 8.5e+02 0.4 4.9 4 24 284 304 281 305 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF101-201 - 436 4.6e-07 30.0 48.8 6 9 0.013 16 5.9 0.5 2 22 310 330 309 330 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF101-201 - 436 4.6e-07 30.0 48.8 7 9 0.94 1.2e+03 -0.1 3.2 2 24 338 360 337 361 0.87 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF101-201 - 436 4.6e-07 30.0 48.8 8 9 7.7 9.8e+03 -3.0 0.1 2 11 366 375 365 376 0.83 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF101-201 - 436 4.6e-07 30.0 48.8 9 9 0.0053 6.8 7.1 0.2 2 24 394 416 393 417 0.93 Zinc-finger double-stranded RNA-binding # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF101-201.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF101-201.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF101-201.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF101-201.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF101-201.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:59:30 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF101-202.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF101-202.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF101-202.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF101-202.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF101-202.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:59:30 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZNF101-203 - 316 1.1e-47 158.3 80.1 1 10 6.1e-06 0.006 17.0 0.5 10 26 44 60 39 60 0.88 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF101-203 - 316 1.1e-47 158.3 80.1 2 10 0.00015 0.15 12.6 0.7 5 17 67 79 64 81 0.90 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF101-203 - 316 1.1e-47 158.3 80.1 3 10 4.7e-07 0.00046 20.5 3.8 3 22 93 112 92 112 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF101-203 - 316 1.1e-47 158.3 80.1 4 10 5.4e-11 5.4e-08 32.9 1.1 5 25 123 143 120 144 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF101-203 - 316 1.1e-47 158.3 80.1 5 10 0.0016 1.6 9.3 2.7 2 23 148 170 147 173 0.89 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF101-203 - 316 1.1e-47 158.3 80.1 6 10 3.2e-07 0.00032 21.0 3.7 2 25 177 200 176 201 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF101-203 - 316 1.1e-47 158.3 80.1 7 10 1e-10 1e-07 32.1 0.6 1 25 204 228 204 229 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF101-203 - 316 1.1e-47 158.3 80.1 8 10 7.7e-10 7.6e-07 29.3 2.9 2 24 233 255 233 256 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF101-203 - 316 1.1e-47 158.3 80.1 9 10 1.3e-10 1.3e-07 31.8 1.0 1 25 260 284 260 285 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF101-203 - 316 1.1e-47 158.3 80.1 10 10 1.4 1.4e+03 -0.0 0.3 2 9 289 296 288 301 0.87 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZNF101-203 - 316 1.3e-31 107.3 72.5 1 9 7.9e-09 7.8e-06 26.1 0.4 1 23 49 71 49 71 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF101-203 - 316 1.3e-31 107.3 72.5 2 9 0.14 1.4e+02 3.2 0.3 8 23 84 99 77 99 0.85 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF101-203 - 316 1.3e-31 107.3 72.5 3 9 3.1e-07 0.00031 21.0 0.3 1 23 105 127 105 127 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF101-203 - 316 1.3e-31 107.3 72.5 4 9 4.4e-07 0.00044 20.6 0.3 1 23 133 156 133 156 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF101-203 - 316 1.3e-31 107.3 72.5 5 9 0.0019 1.8 9.1 7.3 1 23 162 184 162 184 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF101-203 - 316 1.3e-31 107.3 72.5 6 9 0.00017 0.17 12.4 1.1 1 23 190 212 190 212 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF101-203 - 316 1.3e-31 107.3 72.5 7 9 3.6e-07 0.00036 20.8 6.2 1 23 218 240 218 240 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF101-203 - 316 1.3e-31 107.3 72.5 8 9 3.6e-05 0.036 14.5 1.7 1 23 246 268 246 268 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF101-203 - 316 1.3e-31 107.3 72.5 9 9 6.1e-07 0.00061 20.1 1.7 1 23 274 296 274 296 0.97 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZNF101-203 - 316 1.1e-25 88.0 68.5 1 8 1.3e-06 0.0013 19.4 0.4 1 23 49 71 49 72 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF101-203 - 316 1.1e-25 88.0 68.5 2 8 6.9e-05 0.069 14.0 0.3 1 23 105 127 105 128 0.87 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF101-203 - 316 1.1e-25 88.0 68.5 3 8 4.2e-06 0.0041 17.8 0.3 1 24 133 156 133 156 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF101-203 - 316 1.1e-25 88.0 68.5 4 8 0.00012 0.12 13.3 6.9 1 23 162 184 162 185 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF101-203 - 316 1.1e-25 88.0 68.5 5 8 4.5e-06 0.0045 17.7 1.6 1 23 190 212 190 213 0.97 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF101-203 - 316 1.1e-25 88.0 68.5 6 8 6.5e-06 0.0065 17.2 4.6 1 23 218 240 218 241 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF101-203 - 316 1.1e-25 88.0 68.5 7 8 0.00019 0.19 12.7 1.8 1 23 246 268 246 269 0.88 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF101-203 - 316 1.1e-25 88.0 68.5 8 8 2e-05 0.02 15.7 1.1 3 23 276 296 274 297 0.84 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF101-203 - 316 4.7e-07 29.7 73.0 1 8 4.5e-05 0.045 13.8 0.4 2 13 49 60 49 61 0.96 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF101-203 - 316 4.7e-07 29.7 73.0 2 8 0.009 9 6.4 1.5 1 9 104 112 104 112 0.92 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF101-203 - 316 4.7e-07 29.7 73.0 3 8 0.00017 0.17 12.0 0.6 2 24 133 156 133 157 0.87 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF101-203 - 316 4.7e-07 29.7 73.0 4 8 0.18 1.8e+02 2.3 5.9 2 24 162 184 161 186 0.75 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF101-203 - 316 4.7e-07 29.7 73.0 5 8 0.00025 0.25 11.4 1.1 2 24 190 212 189 215 0.91 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF101-203 - 316 4.7e-07 29.7 73.0 6 8 0.0046 4.6 7.4 7.4 2 25 218 241 218 243 0.90 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF101-203 - 316 4.7e-07 29.7 73.0 7 8 0.0045 4.5 7.4 1.3 2 24 246 268 246 271 0.82 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF101-203 - 316 4.7e-07 29.7 73.0 8 8 0.00091 0.91 9.6 0.7 2 24 274 296 274 298 0.74 C2H2-type zinc finger # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF101-203.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF101-203.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF101-203.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF101-203.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF101-203.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:59:31 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- KRAB PF01352.27 42 ZNF101-204 - 61 4.8e-24 83.7 0.3 1 1 3.5e-28 6.3e-24 83.3 0.3 1 40 3 42 3 42 0.98 KRAB box # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF101-204.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF101-204.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF101-204.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF101-204.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF101-204.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:59:31 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF101-205.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF101-205.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF101-205.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF101-205.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF101-205.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:59:31 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF101-206.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF101-206.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF101-206.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF101-206.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF101-206.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:59:32 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF101-207.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF101-207.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF101-207.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF101-207.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF101-207.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:59:32 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZNF101-208 - 436 6.1e-48 159.2 94.1 1 12 9.5e-05 0.12 12.8 1.1 7 25 94 112 90 113 0.85 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF101-208 - 436 6.1e-48 159.2 94.1 2 12 0.15 1.9e+02 2.7 0.3 2 17 117 132 117 133 0.85 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF101-208 - 436 6.1e-48 159.2 94.1 3 12 7e-06 0.0089 16.4 0.5 10 26 164 180 159 180 0.88 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF101-208 - 436 6.1e-48 159.2 94.1 4 12 0.00017 0.21 12.1 0.7 5 17 187 199 184 201 0.90 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF101-208 - 436 6.1e-48 159.2 94.1 5 12 5.4e-07 0.00069 19.9 3.8 3 22 213 232 212 232 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF101-208 - 436 6.1e-48 159.2 94.1 6 12 6.3e-11 8.1e-08 32.4 1.1 5 25 243 263 240 264 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF101-208 - 436 6.1e-48 159.2 94.1 7 12 0.0018 2.3 8.8 2.7 2 23 268 290 267 293 0.88 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF101-208 - 436 6.1e-48 159.2 94.1 8 12 3.7e-07 0.00048 20.4 3.7 2 25 297 320 296 321 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF101-208 - 436 6.1e-48 159.2 94.1 9 12 1.2e-10 1.5e-07 31.5 0.6 1 25 324 348 324 349 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF101-208 - 436 6.1e-48 159.2 94.1 10 12 8.9e-10 1.1e-06 28.7 2.9 2 24 353 375 353 376 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF101-208 - 436 6.1e-48 159.2 94.1 11 12 1.5e-10 1.9e-07 31.2 1.0 1 25 380 404 380 405 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF101-208 - 436 6.1e-48 159.2 94.1 12 12 1.6 2.1e+03 -0.5 0.3 2 9 409 416 408 421 0.87 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZNF101-208 - 436 1.8e-32 110.0 85.1 1 10 5e-05 0.065 13.7 4.6 2 23 103 124 102 124 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF101-208 - 436 1.8e-32 110.0 85.1 2 10 9.1e-09 1.2e-05 25.5 0.4 1 23 169 191 169 191 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF101-208 - 436 1.8e-32 110.0 85.1 3 10 0.16 2.1e+02 2.7 0.3 8 23 204 219 197 219 0.85 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF101-208 - 436 1.8e-32 110.0 85.1 4 10 3.7e-07 0.00047 20.5 0.3 1 23 225 247 225 247 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF101-208 - 436 1.8e-32 110.0 85.1 5 10 5.1e-07 0.00065 20.0 0.3 1 23 253 276 253 276 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF101-208 - 436 1.8e-32 110.0 85.1 6 10 0.0022 2.8 8.6 7.3 1 23 282 304 282 304 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF101-208 - 436 1.8e-32 110.0 85.1 7 10 0.00019 0.25 11.9 1.1 1 23 310 332 310 332 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF101-208 - 436 1.8e-32 110.0 85.1 8 10 4.2e-07 0.00054 20.3 6.2 1 23 338 360 338 360 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF101-208 - 436 1.8e-32 110.0 85.1 9 10 4.2e-05 0.054 14.0 1.7 1 23 366 388 366 388 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF101-208 - 436 1.8e-32 110.0 85.1 10 10 7.1e-07 0.00091 19.6 1.7 1 23 394 416 394 416 0.97 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZNF101-208 - 436 2.9e-29 99.2 75.2 1 9 5.2e-06 0.0066 17.2 3.6 2 23 103 124 102 125 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF101-208 - 436 2.9e-29 99.2 75.2 2 9 1.5e-06 0.0019 18.9 0.4 1 23 169 191 169 192 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF101-208 - 436 2.9e-29 99.2 75.2 3 9 8.1e-05 0.1 13.5 0.3 1 23 225 247 225 248 0.87 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF101-208 - 436 2.9e-29 99.2 75.2 4 9 4.9e-06 0.0062 17.3 0.3 1 24 253 276 253 276 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF101-208 - 436 2.9e-29 99.2 75.2 5 9 0.00014 0.18 12.7 6.9 1 23 282 304 282 305 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF101-208 - 436 2.9e-29 99.2 75.2 6 9 5.3e-06 0.0068 17.2 1.6 1 23 310 332 310 333 0.97 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF101-208 - 436 2.9e-29 99.2 75.2 7 9 7.6e-06 0.0098 16.7 4.6 1 23 338 360 338 361 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF101-208 - 436 2.9e-29 99.2 75.2 8 9 0.00022 0.28 12.1 1.8 1 23 366 388 366 389 0.88 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF101-208 - 436 2.9e-29 99.2 75.2 9 9 2.3e-05 0.03 15.2 1.1 3 23 396 416 394 417 0.84 C2H2-type zinc finger KRAB PF01352.27 42 ZNF101-208 - 436 4.5e-24 83.8 0.1 1 1 5.9e-27 7.5e-24 83.1 0.1 1 42 3 44 3 44 0.99 KRAB box zf-C2H2_6 PF13912.6 27 ZNF101-208 - 436 8.7e-08 32.0 77.2 1 9 0.0054 7 6.8 2.3 3 11 103 111 103 125 0.83 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF101-208 - 436 8.7e-08 32.0 77.2 2 9 5.1e-05 0.065 13.3 0.4 2 13 169 180 169 181 0.96 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF101-208 - 436 8.7e-08 32.0 77.2 3 9 0.01 13 5.9 1.5 1 9 224 232 224 232 0.92 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF101-208 - 436 8.7e-08 32.0 77.2 4 9 0.00019 0.25 11.4 0.6 2 24 253 276 253 277 0.87 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF101-208 - 436 8.7e-08 32.0 77.2 5 9 0.2 2.5e+02 1.8 5.9 2 24 282 304 281 306 0.75 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF101-208 - 436 8.7e-08 32.0 77.2 6 9 0.00029 0.37 10.8 1.1 2 24 310 332 309 335 0.91 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF101-208 - 436 8.7e-08 32.0 77.2 7 9 0.004 5.1 7.2 7.0 2 25 338 361 338 363 0.90 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF101-208 - 436 8.7e-08 32.0 77.2 8 9 0.0052 6.6 6.9 1.3 2 24 366 388 366 391 0.82 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF101-208 - 436 8.7e-08 32.0 77.2 9 9 0.001 1.3 9.1 0.7 2 24 394 416 394 418 0.74 C2H2-type zinc finger zf-C2H2_jaz PF12171.8 27 ZNF101-208 - 436 4.6e-07 30.0 48.8 1 9 0.00086 1.1 9.6 0.1 4 22 104 122 103 122 0.95 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF101-208 - 436 4.6e-07 30.0 48.8 2 9 8.5e-07 0.0011 19.2 0.2 2 24 169 191 168 191 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF101-208 - 436 4.6e-07 30.0 48.8 3 9 0.055 70 3.9 0.2 2 23 225 246 224 247 0.80 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF101-208 - 436 4.6e-07 30.0 48.8 4 9 0.00032 0.4 11.0 0.0 2 21 253 272 252 273 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF101-208 - 436 4.6e-07 30.0 48.8 5 9 0.66 8.5e+02 0.4 4.9 4 24 284 304 281 305 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF101-208 - 436 4.6e-07 30.0 48.8 6 9 0.013 16 5.9 0.5 2 22 310 330 309 330 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF101-208 - 436 4.6e-07 30.0 48.8 7 9 0.94 1.2e+03 -0.1 3.2 2 24 338 360 337 361 0.87 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF101-208 - 436 4.6e-07 30.0 48.8 8 9 7.7 9.8e+03 -3.0 0.1 2 11 366 375 365 376 0.83 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF101-208 - 436 4.6e-07 30.0 48.8 9 9 0.0053 6.8 7.1 0.2 2 24 394 416 393 417 0.93 Zinc-finger double-stranded RNA-binding # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF101-208.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF101-208.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF101-208.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF101-208.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF101-208.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:59:32 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZNF10-201 - 573 7.1e-70 228.5 86.2 1 13 4.8 5.4e+03 -1.8 0.2 5 12 186 194 185 219 0.69 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF10-201 - 573 7.1e-70 228.5 86.2 2 13 0.00075 0.84 10.2 0.1 7 18 230 241 224 242 0.88 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF10-201 - 573 7.1e-70 228.5 86.2 3 13 3.2e-05 0.036 14.5 1.7 10 25 260 275 257 275 0.89 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF10-201 - 573 7.1e-70 228.5 86.2 4 13 2.3e-12 2.6e-09 37.1 0.6 1 25 279 303 279 304 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF10-201 - 573 7.1e-70 228.5 86.2 5 13 2e-09 2.2e-06 27.8 1.5 4 25 310 331 307 331 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF10-201 - 573 7.1e-70 228.5 86.2 6 13 1.2e-09 1.4e-06 28.5 2.3 1 26 335 360 335 360 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF10-201 - 573 7.1e-70 228.5 86.2 7 13 3.8e-13 4.3e-10 39.6 0.9 2 25 364 387 363 388 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF10-201 - 573 7.1e-70 228.5 86.2 8 13 1.6e-06 0.0018 18.6 0.6 2 25 392 415 391 416 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF10-201 - 573 7.1e-70 228.5 86.2 9 13 1.5e-07 0.00016 21.9 4.6 1 25 419 443 419 444 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF10-201 - 573 7.1e-70 228.5 86.2 10 13 7e-11 7.9e-08 32.4 3.5 1 25 447 471 447 472 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF10-201 - 573 7.1e-70 228.5 86.2 11 13 1.8e-09 2e-06 28.0 0.3 2 24 476 498 475 500 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF10-201 - 573 7.1e-70 228.5 86.2 12 13 7.9e-05 0.089 13.3 0.0 2 21 504 523 503 528 0.90 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF10-201 - 573 7.1e-70 228.5 86.2 13 13 0.0038 4.3 7.9 0.0 5 21 535 551 534 556 0.86 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZNF10-201 - 573 2.5e-62 204.0 93.6 1 12 0.088 99 3.7 0.2 5 17 214 226 207 227 0.83 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF10-201 - 573 2.5e-62 204.0 93.6 2 12 2.8e-07 0.00031 21.0 0.8 1 23 265 287 265 287 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF10-201 - 573 2.5e-62 204.0 93.6 3 12 1.9e-09 2.1e-06 27.8 2.2 1 23 293 315 293 315 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF10-201 - 573 2.5e-62 204.0 93.6 4 12 1.9e-07 0.00021 21.5 2.6 1 23 321 343 321 343 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF10-201 - 573 2.5e-62 204.0 93.6 5 12 1.1e-08 1.2e-05 25.4 3.5 1 23 349 371 349 371 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF10-201 - 573 2.5e-62 204.0 93.6 6 12 1.2e-09 1.3e-06 28.5 1.7 1 23 377 399 377 399 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF10-201 - 573 2.5e-62 204.0 93.6 7 12 1.1e-08 1.2e-05 25.5 3.1 1 23 405 427 405 427 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF10-201 - 573 2.5e-62 204.0 93.6 8 12 3.7e-09 4.1e-06 26.9 7.0 1 23 433 455 433 455 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF10-201 - 573 2.5e-62 204.0 93.6 9 12 1.1e-10 1.2e-07 31.8 0.7 1 23 461 483 461 483 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF10-201 - 573 2.5e-62 204.0 93.6 10 12 4.3e-08 4.8e-05 23.6 1.3 1 23 489 511 489 511 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF10-201 - 573 2.5e-62 204.0 93.6 11 12 1.1e-05 0.013 16.0 0.1 1 23 517 539 517 539 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF10-201 - 573 2.5e-62 204.0 93.6 12 12 0.039 43 4.8 0.0 2 16 546 560 545 561 0.92 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZNF10-201 - 573 1.5e-31 106.4 87.4 1 12 2.8 3.1e+03 -0.5 0.1 5 13 214 222 213 232 0.76 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF10-201 - 573 1.5e-31 106.4 87.4 2 12 0.00065 0.73 10.8 0.9 1 23 265 287 265 288 0.90 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF10-201 - 573 1.5e-31 106.4 87.4 3 12 7.5e-07 0.00084 20.0 1.8 1 23 293 315 293 316 0.97 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF10-201 - 573 1.5e-31 106.4 87.4 4 12 9.3e-05 0.1 13.5 2.6 1 23 321 343 321 344 0.91 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF10-201 - 573 1.5e-31 106.4 87.4 5 12 6.7e-06 0.0075 17.0 2.3 1 23 349 371 349 372 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF10-201 - 573 1.5e-31 106.4 87.4 6 12 3.9e-06 0.0044 17.7 1.1 1 23 377 399 377 400 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF10-201 - 573 1.5e-31 106.4 87.4 7 12 0.00012 0.14 13.1 2.4 1 23 405 427 405 428 0.91 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF10-201 - 573 1.5e-31 106.4 87.4 8 12 3.4e-05 0.038 14.8 5.9 1 23 433 455 433 456 0.97 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF10-201 - 573 1.5e-31 106.4 87.4 9 12 4.5e-06 0.0051 17.6 0.7 1 23 461 483 461 484 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF10-201 - 573 1.5e-31 106.4 87.4 10 12 4.6e-06 0.0052 17.5 0.8 1 23 489 511 489 512 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF10-201 - 573 1.5e-31 106.4 87.4 11 12 0.00013 0.15 13.0 0.1 1 23 517 539 517 540 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF10-201 - 573 1.5e-31 106.4 87.4 12 12 0.46 5.2e+02 2.0 0.0 2 17 546 561 545 569 0.75 C2H2-type zinc finger KRAB PF01352.27 42 ZNF10-201 - 573 4e-23 80.8 0.7 1 1 7.6e-26 8.6e-23 79.7 0.7 1 42 13 54 13 54 0.99 KRAB box Zn-ribbon_8 PF09723.10 40 ZNF10-201 - 573 1.2e-11 44.6 59.9 1 9 2.7 3e+03 -1.6 0.2 10 30 214 241 213 243 0.50 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF10-201 - 573 1.2e-11 44.6 59.9 2 9 4.1e-05 0.046 13.8 4.2 6 38 265 304 264 306 0.89 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF10-201 - 573 1.2e-11 44.6 59.9 3 9 0.00022 0.25 11.5 6.9 6 34 293 328 291 331 0.90 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF10-201 - 573 1.2e-11 44.6 59.9 4 9 5.9e-05 0.066 13.3 3.1 6 34 321 356 320 359 0.83 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF10-201 - 573 1.2e-11 44.6 59.9 5 9 2.7e-06 0.0031 17.6 2.4 6 37 349 387 348 389 0.89 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF10-201 - 573 1.2e-11 44.6 59.9 6 9 0.056 63 3.8 8.3 6 34 405 440 404 445 0.85 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF10-201 - 573 1.2e-11 44.6 59.9 7 9 0.075 84 3.4 2.1 6 16 433 443 430 453 0.86 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF10-201 - 573 1.2e-11 44.6 59.9 8 9 6.6e-06 0.0074 16.4 3.7 6 35 461 497 460 501 0.90 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF10-201 - 573 1.2e-11 44.6 59.9 9 9 9.3e-05 0.1 12.7 0.2 6 35 517 553 516 556 0.76 Zinc ribbon domain zf-C2H2_6 PF13912.6 27 ZNF10-201 - 573 3.2e-11 42.9 86.0 1 11 0.0028 3.1 7.9 0.4 2 12 265 275 265 283 0.89 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF10-201 - 573 3.2e-11 42.9 86.0 2 11 5.1e-07 0.00057 19.8 3.6 2 24 293 315 293 318 0.96 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF10-201 - 573 3.2e-11 42.9 86.0 3 11 2.3e-05 0.026 14.5 3.2 2 24 321 343 321 345 0.95 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF10-201 - 573 3.2e-11 42.9 86.0 4 11 0.00082 0.91 9.6 1.1 2 24 349 371 348 374 0.80 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF10-201 - 573 3.2e-11 42.9 86.0 5 11 2.6e-05 0.029 14.4 0.9 2 24 377 399 377 401 0.91 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF10-201 - 573 3.2e-11 42.9 86.0 6 11 0.001 1.1 9.3 0.8 2 12 405 415 405 416 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF10-201 - 573 3.2e-11 42.9 86.0 7 11 0.55 6.2e+02 0.6 5.9 2 24 433 455 433 458 0.88 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF10-201 - 573 3.2e-11 42.9 86.0 8 11 0.00096 1.1 9.4 0.7 2 22 461 481 461 485 0.85 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF10-201 - 573 3.2e-11 42.9 86.0 9 11 0.0059 6.6 6.9 0.7 2 22 489 509 489 512 0.89 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF10-201 - 573 3.2e-11 42.9 86.0 10 11 0.17 1.9e+02 2.2 0.3 2 8 517 523 516 527 0.88 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF10-201 - 573 3.2e-11 42.9 86.0 11 11 7.8 8.7e+03 -3.1 0.6 4 8 547 551 546 552 0.87 C2H2-type zinc finger # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF10-201.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF10-201.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF10-201.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF10-201.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF10-201.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:59:33 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZNF10-202 - 439 5.3e-65 213.1 69.9 1 10 1.8e-10 1.6e-07 31.4 1.7 4 25 148 169 144 170 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF10-202 - 439 5.3e-65 213.1 69.9 2 10 1.8e-09 1.6e-06 28.3 1.5 4 25 176 197 173 197 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF10-202 - 439 5.3e-65 213.1 69.9 3 10 1.1e-09 9.8e-07 28.9 2.3 1 26 201 226 201 226 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF10-202 - 439 5.3e-65 213.1 69.9 4 10 3.5e-13 3.1e-10 40.0 0.9 2 25 230 253 229 254 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF10-202 - 439 5.3e-65 213.1 69.9 5 10 1.4e-06 0.0013 19.1 0.6 2 25 258 281 257 282 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF10-202 - 439 5.3e-65 213.1 69.9 6 10 1.3e-07 0.00012 22.4 4.6 1 25 285 309 285 310 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF10-202 - 439 5.3e-65 213.1 69.9 7 10 6.4e-11 5.7e-08 32.8 3.5 1 25 313 337 313 338 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF10-202 - 439 5.3e-65 213.1 69.9 8 10 1.6e-09 1.5e-06 28.4 0.3 2 24 342 364 341 366 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF10-202 - 439 5.3e-65 213.1 69.9 9 10 7.2e-05 0.065 13.7 0.0 2 21 370 389 369 394 0.90 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF10-202 - 439 5.3e-65 213.1 69.9 10 10 0.0035 3.1 8.4 0.0 5 21 401 417 400 422 0.86 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZNF10-202 - 439 1.1e-58 192.5 80.5 1 10 1.7e-09 1.5e-06 28.3 2.2 1 23 159 181 159 181 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF10-202 - 439 1.1e-58 192.5 80.5 2 10 1.7e-07 0.00015 22.0 2.6 1 23 187 209 187 209 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF10-202 - 439 1.1e-58 192.5 80.5 3 10 1e-08 9.1e-06 25.9 3.5 1 23 215 237 215 237 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF10-202 - 439 1.1e-58 192.5 80.5 4 10 1.1e-09 9.6e-07 28.9 1.7 1 23 243 265 243 265 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF10-202 - 439 1.1e-58 192.5 80.5 5 10 9.7e-09 8.7e-06 25.9 3.1 1 23 271 293 271 293 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF10-202 - 439 1.1e-58 192.5 80.5 6 10 3.3e-09 3e-06 27.4 7.0 1 23 299 321 299 321 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF10-202 - 439 1.1e-58 192.5 80.5 7 10 9.7e-11 8.7e-08 32.2 0.7 1 23 327 349 327 349 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF10-202 - 439 1.1e-58 192.5 80.5 8 10 3.9e-08 3.5e-05 24.0 1.3 1 23 355 377 355 377 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF10-202 - 439 1.1e-58 192.5 80.5 9 10 1e-05 0.0092 16.4 0.1 1 23 383 405 383 405 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF10-202 - 439 1.1e-58 192.5 80.5 10 10 0.035 32 5.3 0.0 2 16 412 426 411 427 0.92 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZNF10-202 - 439 5.8e-32 107.6 75.4 1 10 6.8e-07 0.00061 20.4 1.8 1 23 159 181 159 182 0.97 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF10-202 - 439 5.8e-32 107.6 75.4 2 10 8.4e-05 0.075 13.9 2.6 1 23 187 209 187 210 0.91 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF10-202 - 439 5.8e-32 107.6 75.4 3 10 6.1e-06 0.0054 17.5 2.3 1 23 215 237 215 238 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF10-202 - 439 5.8e-32 107.6 75.4 4 10 3.6e-06 0.0032 18.2 1.1 1 23 243 265 243 266 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF10-202 - 439 5.8e-32 107.6 75.4 5 10 0.00011 0.1 13.5 2.4 1 23 271 293 271 294 0.91 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF10-202 - 439 5.8e-32 107.6 75.4 6 10 3e-05 0.027 15.3 5.9 1 23 299 321 299 322 0.97 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF10-202 - 439 5.8e-32 107.6 75.4 7 10 4.1e-06 0.0037 18.0 0.7 1 23 327 349 327 350 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF10-202 - 439 5.8e-32 107.6 75.4 8 10 4.2e-06 0.0037 18.0 0.8 1 23 355 377 355 378 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF10-202 - 439 5.8e-32 107.6 75.4 9 10 0.00012 0.11 13.4 0.1 1 23 383 405 383 406 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF10-202 - 439 5.8e-32 107.6 75.4 10 10 0.42 3.8e+02 2.4 0.0 2 17 412 427 411 435 0.75 C2H2-type zinc finger KRAB PF01352.27 42 ZNF10-202 - 439 3e-23 81.2 0.7 1 1 6.8e-26 6.1e-23 80.2 0.7 1 42 13 54 13 54 0.99 KRAB box Zn-ribbon_8 PF09723.10 40 ZNF10-202 - 439 2.9e-12 46.5 50.2 1 7 0.00028 0.25 11.5 7.4 6 34 159 194 158 197 0.89 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF10-202 - 439 2.9e-12 46.5 50.2 2 7 0.003 2.7 8.2 0.7 6 16 187 197 186 211 0.82 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF10-202 - 439 2.9e-12 46.5 50.2 3 7 1.8e-06 0.0016 18.5 2.0 6 37 215 253 214 255 0.89 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF10-202 - 439 2.9e-12 46.5 50.2 4 7 0.061 55 4.0 8.6 6 34 271 306 270 311 0.85 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF10-202 - 439 2.9e-12 46.5 50.2 5 7 0.066 59 3.9 2.1 6 17 299 310 296 320 0.86 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF10-202 - 439 2.9e-12 46.5 50.2 6 7 5.9e-06 0.0053 16.9 3.7 6 35 327 363 326 367 0.90 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF10-202 - 439 2.9e-12 46.5 50.2 7 7 8.3e-05 0.074 13.2 0.2 6 35 383 419 382 422 0.76 Zinc ribbon domain zf-C2H2_6 PF13912.6 27 ZNF10-202 - 439 3.3e-11 42.9 79.5 1 10 4.6e-07 0.00042 20.3 3.6 2 24 159 181 159 184 0.96 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF10-202 - 439 3.3e-11 42.9 79.5 2 10 2.1e-05 0.019 14.9 3.2 2 24 187 209 187 211 0.95 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF10-202 - 439 3.3e-11 42.9 79.5 3 10 0.00075 0.67 10.0 1.2 2 24 215 237 214 240 0.80 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF10-202 - 439 3.3e-11 42.9 79.5 4 10 2.4e-05 0.021 14.8 0.9 2 24 243 265 243 267 0.91 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF10-202 - 439 3.3e-11 42.9 79.5 5 10 0.00095 0.85 9.7 0.8 2 12 271 281 271 282 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF10-202 - 439 3.3e-11 42.9 79.5 6 10 0.51 4.5e+02 1.0 6.0 2 24 299 321 299 324 0.88 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF10-202 - 439 3.3e-11 42.9 79.5 7 10 0.00087 0.78 9.8 0.7 2 22 327 347 327 351 0.85 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF10-202 - 439 3.3e-11 42.9 79.5 8 10 0.0054 4.8 7.3 0.7 2 22 355 375 355 378 0.89 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF10-202 - 439 3.3e-11 42.9 79.5 9 10 0.16 1.5e+02 2.6 0.3 2 8 383 389 382 393 0.88 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF10-202 - 439 3.3e-11 42.9 79.5 10 10 7.3 6.5e+03 -2.7 0.6 4 8 413 417 412 418 0.87 C2H2-type zinc finger # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF10-202.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF10-202.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF10-202.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF10-202.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF10-202.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:59:33 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZNF10-203 - 573 7.1e-70 228.5 86.2 1 13 4.8 5.4e+03 -1.8 0.2 5 12 186 194 185 219 0.69 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF10-203 - 573 7.1e-70 228.5 86.2 2 13 0.00075 0.84 10.2 0.1 7 18 230 241 224 242 0.88 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF10-203 - 573 7.1e-70 228.5 86.2 3 13 3.2e-05 0.036 14.5 1.7 10 25 260 275 257 275 0.89 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF10-203 - 573 7.1e-70 228.5 86.2 4 13 2.3e-12 2.6e-09 37.1 0.6 1 25 279 303 279 304 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF10-203 - 573 7.1e-70 228.5 86.2 5 13 2e-09 2.2e-06 27.8 1.5 4 25 310 331 307 331 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF10-203 - 573 7.1e-70 228.5 86.2 6 13 1.2e-09 1.4e-06 28.5 2.3 1 26 335 360 335 360 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF10-203 - 573 7.1e-70 228.5 86.2 7 13 3.8e-13 4.3e-10 39.6 0.9 2 25 364 387 363 388 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF10-203 - 573 7.1e-70 228.5 86.2 8 13 1.6e-06 0.0018 18.6 0.6 2 25 392 415 391 416 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF10-203 - 573 7.1e-70 228.5 86.2 9 13 1.5e-07 0.00016 21.9 4.6 1 25 419 443 419 444 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF10-203 - 573 7.1e-70 228.5 86.2 10 13 7e-11 7.9e-08 32.4 3.5 1 25 447 471 447 472 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF10-203 - 573 7.1e-70 228.5 86.2 11 13 1.8e-09 2e-06 28.0 0.3 2 24 476 498 475 500 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF10-203 - 573 7.1e-70 228.5 86.2 12 13 7.9e-05 0.089 13.3 0.0 2 21 504 523 503 528 0.90 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF10-203 - 573 7.1e-70 228.5 86.2 13 13 0.0038 4.3 7.9 0.0 5 21 535 551 534 556 0.86 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZNF10-203 - 573 2.5e-62 204.0 93.6 1 12 0.088 99 3.7 0.2 5 17 214 226 207 227 0.83 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF10-203 - 573 2.5e-62 204.0 93.6 2 12 2.8e-07 0.00031 21.0 0.8 1 23 265 287 265 287 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF10-203 - 573 2.5e-62 204.0 93.6 3 12 1.9e-09 2.1e-06 27.8 2.2 1 23 293 315 293 315 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF10-203 - 573 2.5e-62 204.0 93.6 4 12 1.9e-07 0.00021 21.5 2.6 1 23 321 343 321 343 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF10-203 - 573 2.5e-62 204.0 93.6 5 12 1.1e-08 1.2e-05 25.4 3.5 1 23 349 371 349 371 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF10-203 - 573 2.5e-62 204.0 93.6 6 12 1.2e-09 1.3e-06 28.5 1.7 1 23 377 399 377 399 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF10-203 - 573 2.5e-62 204.0 93.6 7 12 1.1e-08 1.2e-05 25.5 3.1 1 23 405 427 405 427 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF10-203 - 573 2.5e-62 204.0 93.6 8 12 3.7e-09 4.1e-06 26.9 7.0 1 23 433 455 433 455 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF10-203 - 573 2.5e-62 204.0 93.6 9 12 1.1e-10 1.2e-07 31.8 0.7 1 23 461 483 461 483 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF10-203 - 573 2.5e-62 204.0 93.6 10 12 4.3e-08 4.8e-05 23.6 1.3 1 23 489 511 489 511 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF10-203 - 573 2.5e-62 204.0 93.6 11 12 1.1e-05 0.013 16.0 0.1 1 23 517 539 517 539 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF10-203 - 573 2.5e-62 204.0 93.6 12 12 0.039 43 4.8 0.0 2 16 546 560 545 561 0.92 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZNF10-203 - 573 1.5e-31 106.4 87.4 1 12 2.8 3.1e+03 -0.5 0.1 5 13 214 222 213 232 0.76 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF10-203 - 573 1.5e-31 106.4 87.4 2 12 0.00065 0.73 10.8 0.9 1 23 265 287 265 288 0.90 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF10-203 - 573 1.5e-31 106.4 87.4 3 12 7.5e-07 0.00084 20.0 1.8 1 23 293 315 293 316 0.97 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF10-203 - 573 1.5e-31 106.4 87.4 4 12 9.3e-05 0.1 13.5 2.6 1 23 321 343 321 344 0.91 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF10-203 - 573 1.5e-31 106.4 87.4 5 12 6.7e-06 0.0075 17.0 2.3 1 23 349 371 349 372 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF10-203 - 573 1.5e-31 106.4 87.4 6 12 3.9e-06 0.0044 17.7 1.1 1 23 377 399 377 400 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF10-203 - 573 1.5e-31 106.4 87.4 7 12 0.00012 0.14 13.1 2.4 1 23 405 427 405 428 0.91 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF10-203 - 573 1.5e-31 106.4 87.4 8 12 3.4e-05 0.038 14.8 5.9 1 23 433 455 433 456 0.97 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF10-203 - 573 1.5e-31 106.4 87.4 9 12 4.5e-06 0.0051 17.6 0.7 1 23 461 483 461 484 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF10-203 - 573 1.5e-31 106.4 87.4 10 12 4.6e-06 0.0052 17.5 0.8 1 23 489 511 489 512 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF10-203 - 573 1.5e-31 106.4 87.4 11 12 0.00013 0.15 13.0 0.1 1 23 517 539 517 540 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF10-203 - 573 1.5e-31 106.4 87.4 12 12 0.46 5.2e+02 2.0 0.0 2 17 546 561 545 569 0.75 C2H2-type zinc finger KRAB PF01352.27 42 ZNF10-203 - 573 4e-23 80.8 0.7 1 1 7.6e-26 8.6e-23 79.7 0.7 1 42 13 54 13 54 0.99 KRAB box Zn-ribbon_8 PF09723.10 40 ZNF10-203 - 573 1.2e-11 44.6 59.9 1 9 2.7 3e+03 -1.6 0.2 10 30 214 241 213 243 0.50 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF10-203 - 573 1.2e-11 44.6 59.9 2 9 4.1e-05 0.046 13.8 4.2 6 38 265 304 264 306 0.89 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF10-203 - 573 1.2e-11 44.6 59.9 3 9 0.00022 0.25 11.5 6.9 6 34 293 328 291 331 0.90 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF10-203 - 573 1.2e-11 44.6 59.9 4 9 5.9e-05 0.066 13.3 3.1 6 34 321 356 320 359 0.83 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF10-203 - 573 1.2e-11 44.6 59.9 5 9 2.7e-06 0.0031 17.6 2.4 6 37 349 387 348 389 0.89 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF10-203 - 573 1.2e-11 44.6 59.9 6 9 0.056 63 3.8 8.3 6 34 405 440 404 445 0.85 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF10-203 - 573 1.2e-11 44.6 59.9 7 9 0.075 84 3.4 2.1 6 16 433 443 430 453 0.86 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF10-203 - 573 1.2e-11 44.6 59.9 8 9 6.6e-06 0.0074 16.4 3.7 6 35 461 497 460 501 0.90 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF10-203 - 573 1.2e-11 44.6 59.9 9 9 9.3e-05 0.1 12.7 0.2 6 35 517 553 516 556 0.76 Zinc ribbon domain zf-C2H2_6 PF13912.6 27 ZNF10-203 - 573 3.2e-11 42.9 86.0 1 11 0.0028 3.1 7.9 0.4 2 12 265 275 265 283 0.89 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF10-203 - 573 3.2e-11 42.9 86.0 2 11 5.1e-07 0.00057 19.8 3.6 2 24 293 315 293 318 0.96 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF10-203 - 573 3.2e-11 42.9 86.0 3 11 2.3e-05 0.026 14.5 3.2 2 24 321 343 321 345 0.95 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF10-203 - 573 3.2e-11 42.9 86.0 4 11 0.00082 0.91 9.6 1.1 2 24 349 371 348 374 0.80 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF10-203 - 573 3.2e-11 42.9 86.0 5 11 2.6e-05 0.029 14.4 0.9 2 24 377 399 377 401 0.91 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF10-203 - 573 3.2e-11 42.9 86.0 6 11 0.001 1.1 9.3 0.8 2 12 405 415 405 416 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF10-203 - 573 3.2e-11 42.9 86.0 7 11 0.55 6.2e+02 0.6 5.9 2 24 433 455 433 458 0.88 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF10-203 - 573 3.2e-11 42.9 86.0 8 11 0.00096 1.1 9.4 0.7 2 22 461 481 461 485 0.85 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF10-203 - 573 3.2e-11 42.9 86.0 9 11 0.0059 6.6 6.9 0.7 2 22 489 509 489 512 0.89 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF10-203 - 573 3.2e-11 42.9 86.0 10 11 0.17 1.9e+02 2.2 0.3 2 8 517 523 516 527 0.88 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF10-203 - 573 3.2e-11 42.9 86.0 11 11 7.8 8.7e+03 -3.1 0.6 4 8 547 551 546 552 0.87 C2H2-type zinc finger # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF10-203.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF10-203.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF10-203.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF10-203.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF10-203.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:59:34 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF10-204.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF10-204.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF10-204.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF10-204.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF10-204.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:59:34 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF10-205.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF10-205.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF10-205.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF10-205.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF10-205.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:59:34 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF10-207.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF10-207.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF10-207.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF10-207.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF10-207.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:59:35 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF10-208.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF10-208.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF10-208.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF10-208.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF10-208.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:59:35 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF10-209.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF10-209.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF10-209.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF10-209.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF10-209.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:59:36 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF10-210.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF10-210.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF10-210.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF10-210.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF10-210.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:59:36 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZNF112-201 - 913 3.9e-106 343.2 127.3 1 23 1.1 1.8e+03 -0.3 1.3 8 21 225 237 216 239 0.71 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF112-201 - 913 3.9e-106 343.2 127.3 2 23 0.0083 14 6.4 0.1 9 26 252 269 250 269 0.90 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF112-201 - 913 3.9e-106 343.2 127.3 3 23 0.0096 16 6.2 0.5 5 23 276 294 273 297 0.89 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF112-201 - 913 3.9e-106 343.2 127.3 4 23 0.039 64 4.2 1.7 6 26 322 342 315 342 0.79 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF112-201 - 913 3.9e-106 343.2 127.3 5 23 3.7 6e+03 -2.0 0.2 6 16 378 388 378 391 0.80 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF112-201 - 913 3.9e-106 343.2 127.3 6 23 0.03 50 4.6 0.0 2 16 402 416 402 425 0.88 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF112-201 - 913 3.9e-106 343.2 127.3 7 23 0.35 5.6e+02 1.2 0.0 7 24 435 452 434 454 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF112-201 - 913 3.9e-106 343.2 127.3 8 23 0.037 61 4.3 0.5 4 25 456 481 453 482 0.67 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF112-201 - 913 3.9e-106 343.2 127.3 9 23 2.1 3.5e+03 -1.2 0.2 5 14 489 498 485 500 0.79 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF112-201 - 913 3.9e-106 343.2 127.3 10 23 2.3e-10 3.7e-07 30.3 1.9 2 26 512 536 511 536 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF112-201 - 913 3.9e-106 343.2 127.3 11 23 1.1e-11 1.8e-08 34.5 0.5 2 25 540 563 540 564 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF112-201 - 913 3.9e-106 343.2 127.3 12 23 6.1e-12 9.9e-09 35.2 0.6 2 25 568 591 567 592 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF112-201 - 913 3.9e-106 343.2 127.3 13 23 3.1e-11 5.1e-08 33.0 0.6 2 25 596 619 595 620 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF112-201 - 913 3.9e-106 343.2 127.3 14 23 9.1e-11 1.5e-07 31.5 1.1 1 25 623 647 623 647 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF112-201 - 913 3.9e-106 343.2 127.3 15 23 1.2e-11 1.9e-08 34.4 0.4 1 25 651 675 651 676 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF112-201 - 913 3.9e-106 343.2 127.3 16 23 7.1e-12 1.2e-08 35.0 0.1 4 25 682 703 680 704 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF112-201 - 913 3.9e-106 343.2 127.3 17 23 1.6e-07 0.00026 21.3 0.1 2 25 708 731 707 732 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF112-201 - 913 3.9e-106 343.2 127.3 18 23 1.8e-08 2.9e-05 24.3 0.5 2 25 736 759 735 760 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF112-201 - 913 3.9e-106 343.2 127.3 19 23 1.1e-09 1.9e-06 28.1 0.5 2 25 764 787 763 788 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF112-201 - 913 3.9e-106 343.2 127.3 20 23 9.3e-07 0.0015 18.8 0.2 2 25 792 815 791 815 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF112-201 - 913 3.9e-106 343.2 127.3 21 23 3.6e-11 5.9e-08 32.8 0.8 1 25 819 843 819 844 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF112-201 - 913 3.9e-106 343.2 127.3 22 23 4.1e-12 6.7e-09 35.8 0.2 1 24 847 870 847 871 0.97 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF112-201 - 913 3.9e-106 343.2 127.3 23 23 0.082 1.3e+02 3.2 0.0 5 18 879 892 875 898 0.80 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZNF112-201 - 913 1.4e-76 248.9 105.5 1 19 0.044 71 4.1 0.1 1 8 231 238 231 247 0.86 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF112-201 - 913 1.4e-76 248.9 105.5 2 19 5.5 8.9e+03 -2.5 0.1 8 23 265 280 260 280 0.79 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF112-201 - 913 1.4e-76 248.9 105.5 3 19 0.024 39 5.0 0.2 6 21 291 306 289 307 0.93 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF112-201 - 913 1.4e-76 248.9 105.5 4 19 0.0088 14 6.3 0.1 9 23 395 409 394 409 0.95 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF112-201 - 913 1.4e-76 248.9 105.5 5 19 1.9 3.2e+03 -1.1 0.3 5 19 475 489 474 493 0.83 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF112-201 - 913 1.4e-76 248.9 105.5 6 19 0.26 4.2e+02 1.7 0.1 13 23 509 519 505 519 0.89 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF112-201 - 913 1.4e-76 248.9 105.5 7 19 3.5e-08 5.8e-05 23.3 1.2 1 23 525 547 525 547 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF112-201 - 913 1.4e-76 248.9 105.5 8 19 2.2e-09 3.5e-06 27.2 0.7 1 23 553 575 553 575 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF112-201 - 913 1.4e-76 248.9 105.5 9 19 8.6e-09 1.4e-05 25.3 0.5 1 23 581 603 581 603 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF112-201 - 913 1.4e-76 248.9 105.5 10 19 3.2e-09 5.3e-06 26.6 1.3 1 23 609 631 609 631 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF112-201 - 913 1.4e-76 248.9 105.5 11 19 9.8e-07 0.0016 18.8 0.3 1 23 637 659 637 659 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF112-201 - 913 1.4e-76 248.9 105.5 12 19 2.3e-08 3.8e-05 23.9 0.2 1 23 665 687 665 687 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF112-201 - 913 1.4e-76 248.9 105.5 13 19 2e-09 3.2e-06 27.3 1.0 1 23 693 715 693 715 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF112-201 - 913 1.4e-76 248.9 105.5 14 19 4.2e-07 0.00069 19.9 0.1 1 23 721 743 721 743 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF112-201 - 913 1.4e-76 248.9 105.5 15 19 2.9e-08 4.8e-05 23.6 0.5 1 23 749 771 749 771 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF112-201 - 913 1.4e-76 248.9 105.5 16 19 2.6e-07 0.00042 20.6 0.5 1 23 777 799 777 799 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF112-201 - 913 1.4e-76 248.9 105.5 17 19 2.6e-07 0.00042 20.6 1.2 1 23 805 827 805 827 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF112-201 - 913 1.4e-76 248.9 105.5 18 19 6.2e-10 1e-06 28.9 0.3 1 23 833 855 833 855 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF112-201 - 913 1.4e-76 248.9 105.5 19 19 2.5e-05 0.041 14.3 0.1 1 23 861 883 861 883 0.99 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZNF112-201 - 913 6.9e-37 122.9 116.6 1 18 3.4 5.5e+03 -1.2 0.1 1 8 231 238 231 245 0.87 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF112-201 - 913 6.9e-37 122.9 116.6 2 18 3.2 5.1e+03 -1.1 0.2 5 20 290 305 289 307 0.68 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF112-201 - 913 6.9e-37 122.9 116.6 3 18 0.84 1.4e+03 0.6 0.1 9 23 395 409 393 410 0.85 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF112-201 - 913 6.9e-37 122.9 116.6 4 18 3.6 5.9e+03 -1.3 0.2 5 19 475 489 474 493 0.74 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF112-201 - 913 6.9e-37 122.9 116.6 5 18 5.8 9.5e+03 -2.0 0.1 14 23 510 519 505 520 0.76 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF112-201 - 913 6.9e-37 122.9 116.6 6 18 8.8e-05 0.14 13.0 0.9 1 23 525 547 525 548 0.83 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF112-201 - 913 6.9e-37 122.9 116.6 7 18 1e-05 0.017 16.0 0.7 1 23 553 575 553 576 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF112-201 - 913 6.9e-37 122.9 116.6 8 18 5.7e-06 0.0093 16.7 0.5 1 23 581 603 581 604 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF112-201 - 913 6.9e-37 122.9 116.6 9 18 2.9e-06 0.0047 17.6 1.3 1 23 609 631 609 632 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF112-201 - 913 6.9e-37 122.9 116.6 10 18 0.0006 0.98 10.4 0.6 1 23 637 659 637 660 0.85 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF112-201 - 913 6.9e-37 122.9 116.6 11 18 7.1e-06 0.012 16.4 0.3 1 23 665 687 665 688 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF112-201 - 913 6.9e-37 122.9 116.6 12 18 7.9e-06 0.013 16.3 1.2 1 23 693 715 693 716 0.90 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF112-201 - 913 6.9e-37 122.9 116.6 13 18 1.4e-05 0.023 15.5 0.2 1 23 721 743 721 744 0.89 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF112-201 - 913 6.9e-37 122.9 116.6 14 18 5.5e-06 0.0089 16.8 0.6 1 23 749 771 749 772 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF112-201 - 913 6.9e-37 122.9 116.6 15 18 3.7e-06 0.0061 17.3 0.6 1 23 777 799 777 800 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF112-201 - 913 6.9e-37 122.9 116.6 16 18 2.4e-06 0.0039 17.9 1.2 1 23 805 827 805 828 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF112-201 - 913 6.9e-37 122.9 116.6 17 18 1.5e-06 0.0024 18.5 0.4 1 23 833 855 833 856 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF112-201 - 913 6.9e-37 122.9 116.6 18 18 0.001 1.6 9.7 0.2 1 23 861 883 861 884 0.88 C2H2-type zinc finger zf-C2H2_jaz PF12171.8 27 ZNF112-201 - 913 2.2e-34 117.0 32.2 1 13 0.00071 1.2 9.5 0.1 2 22 525 545 524 545 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF112-201 - 913 2.2e-34 117.0 32.2 2 13 2.1e-06 0.0035 17.6 0.1 2 22 553 573 552 573 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF112-201 - 913 2.2e-34 117.0 32.2 3 13 0.00012 0.19 12.1 0.0 2 22 581 601 580 601 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF112-201 - 913 2.2e-34 117.0 32.2 4 13 5.1e-05 0.083 13.2 0.0 2 22 609 629 608 629 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF112-201 - 913 2.2e-34 117.0 32.2 5 13 0.01 16 5.9 0.1 2 20 637 655 636 657 0.77 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF112-201 - 913 2.2e-34 117.0 32.2 6 13 1.5e-05 0.024 14.9 0.0 2 22 665 685 664 685 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF112-201 - 913 2.2e-34 117.0 32.2 7 13 0.018 29 5.1 0.2 4 21 695 712 692 713 0.90 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF112-201 - 913 2.2e-34 117.0 32.2 8 13 0.0019 3.1 8.2 0.0 2 22 721 741 720 741 0.90 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF112-201 - 913 2.2e-34 117.0 32.2 9 13 0.0013 2.1 8.7 0.0 2 21 749 768 748 769 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF112-201 - 913 2.2e-34 117.0 32.2 10 13 0.00026 0.43 10.9 0.0 2 22 777 797 776 797 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF112-201 - 913 2.2e-34 117.0 32.2 11 13 0.0049 7.9 6.9 0.1 2 20 805 823 804 824 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF112-201 - 913 2.2e-34 117.0 32.2 12 13 0.00011 0.18 12.2 0.0 2 22 833 853 832 853 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF112-201 - 913 2.2e-34 117.0 32.2 13 13 0.075 1.2e+02 3.1 0.0 2 11 861 870 860 880 0.90 Zinc-finger double-stranded RNA-binding KRAB PF01352.27 42 ZNF112-201 - 913 1.5e-19 69.3 1.0 1 2 9.3e-23 1.5e-19 69.3 1.0 1 40 7 46 7 47 0.96 KRAB box KRAB PF01352.27 42 ZNF112-201 - 913 1.5e-19 69.3 1.0 2 2 2.5 4e+03 -2.4 0.1 10 24 97 111 90 112 0.75 KRAB box zf-met PF12874.7 25 ZNF112-201 - 913 3.3e-14 52.7 67.9 1 13 6.8e-05 0.11 12.9 0.6 1 21 525 545 525 547 0.93 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF112-201 - 913 3.3e-14 52.7 67.9 2 13 0.00013 0.21 12.0 0.6 1 21 553 573 553 575 0.93 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF112-201 - 913 3.3e-14 52.7 67.9 3 13 0.0044 7.2 7.1 0.2 1 21 581 601 581 603 0.92 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF112-201 - 913 3.3e-14 52.7 67.9 4 13 0.003 4.9 7.7 0.4 1 21 609 629 609 631 0.92 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF112-201 - 913 3.3e-14 52.7 67.9 5 13 0.58 9.5e+02 0.4 0.3 1 19 637 655 637 659 0.78 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF112-201 - 913 3.3e-14 52.7 67.9 6 13 0.0024 3.9 8.0 0.2 1 21 665 685 665 687 0.93 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF112-201 - 913 3.3e-14 52.7 67.9 7 13 0.00065 1.1 9.8 0.8 1 19 693 711 693 714 0.94 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF112-201 - 913 3.3e-14 52.7 67.9 8 13 0.00046 0.75 10.3 0.1 1 21 721 741 721 743 0.92 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF112-201 - 913 3.3e-14 52.7 67.9 9 13 0.012 19 5.8 0.1 1 19 749 767 749 771 0.90 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF112-201 - 913 3.3e-14 52.7 67.9 10 13 0.026 43 4.7 0.4 1 20 777 796 777 799 0.85 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF112-201 - 913 3.3e-14 52.7 67.9 11 13 0.81 1.3e+03 -0.0 0.8 1 19 805 823 805 827 0.91 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF112-201 - 913 3.3e-14 52.7 67.9 12 13 3.8e-05 0.061 13.7 0.3 1 21 833 853 833 855 0.93 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF112-201 - 913 3.3e-14 52.7 67.9 13 13 0.44 7.2e+02 0.8 0.0 1 10 861 870 861 879 0.90 Zinc-finger of C2H2 type Zn-ribbon_8 PF09723.10 40 ZNF112-201 - 913 1.3e-11 44.4 73.8 1 14 0.049 80 3.5 0.3 6 16 231 241 227 260 0.78 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF112-201 - 913 1.3e-11 44.4 73.8 2 14 2.3 3.7e+03 -1.9 0.0 6 18 443 455 442 465 0.71 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF112-201 - 913 1.3e-11 44.4 73.8 3 14 0.00025 0.41 10.8 2.9 6 34 525 560 524 565 0.90 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF112-201 - 913 1.3e-11 44.4 73.8 4 14 0.00038 0.62 10.2 6.6 6 36 553 590 551 594 0.90 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF112-201 - 913 1.3e-11 44.4 73.8 5 14 0.00035 0.57 10.3 6.6 6 36 581 618 579 621 0.87 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF112-201 - 913 1.3e-11 44.4 73.8 6 14 0.002 3.2 7.9 6.5 6 34 609 644 607 646 0.86 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF112-201 - 913 1.3e-11 44.4 73.8 7 14 4.3e-05 0.07 13.3 3.6 6 35 637 673 636 678 0.89 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF112-201 - 913 1.3e-11 44.4 73.8 8 14 5.4e-05 0.088 12.9 5.3 6 35 665 701 663 705 0.89 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF112-201 - 913 1.3e-11 44.4 73.8 9 14 5.2e-05 0.085 13.0 2.2 6 35 693 730 692 735 0.87 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF112-201 - 913 1.3e-11 44.4 73.8 10 14 0.0057 9.3 6.5 3.6 6 32 749 782 748 784 0.73 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF112-201 - 913 1.3e-11 44.4 73.8 11 14 0.01 17 5.6 4.8 6 34 777 812 776 815 0.83 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF112-201 - 913 1.3e-11 44.4 73.8 12 14 0.00014 0.23 11.6 3.8 6 34 805 840 804 845 0.86 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF112-201 - 913 1.3e-11 44.4 73.8 13 14 0.00017 0.28 11.3 2.9 6 34 833 868 831 871 0.91 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF112-201 - 913 1.3e-11 44.4 73.8 14 14 0.013 22 5.3 0.2 6 16 861 871 860 883 0.88 Zinc ribbon domain zf_UBZ PF18439.1 32 ZNF112-201 - 913 1e-10 41.0 55.1 1 14 0.07 1.1e+02 2.5 0.1 1 12 229 240 229 245 0.87 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF112-201 - 913 1e-10 41.0 55.1 2 14 0.36 5.9e+02 0.2 0.1 3 12 525 534 523 540 0.83 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF112-201 - 913 1e-10 41.0 55.1 3 14 0.004 6.6 6.4 0.2 3 20 553 571 551 572 0.83 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF112-201 - 913 1e-10 41.0 55.1 4 14 0.0036 5.9 6.6 0.1 3 15 581 593 579 600 0.79 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF112-201 - 913 1e-10 41.0 55.1 5 14 0.0021 3.4 7.3 0.3 3 20 609 627 607 628 0.79 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF112-201 - 913 1e-10 41.0 55.1 6 14 0.0094 15 5.2 0.1 3 14 637 648 635 656 0.76 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF112-201 - 913 1e-10 41.0 55.1 7 14 0.0014 2.3 7.9 0.1 3 21 665 684 663 684 0.84 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF112-201 - 913 1e-10 41.0 55.1 8 14 0.00011 0.18 11.4 0.3 3 21 693 712 691 712 0.90 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF112-201 - 913 1e-10 41.0 55.1 9 14 0.065 1.1e+02 2.6 0.0 3 15 721 733 719 740 0.81 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF112-201 - 913 1e-10 41.0 55.1 10 14 0.0064 11 5.8 0.1 3 19 749 765 747 768 0.86 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF112-201 - 913 1e-10 41.0 55.1 11 14 0.017 28 4.4 0.2 3 21 777 796 775 796 0.89 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF112-201 - 913 1e-10 41.0 55.1 12 14 0.0047 7.7 6.2 0.1 3 20 805 823 803 824 0.81 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF112-201 - 913 1e-10 41.0 55.1 13 14 0.015 25 4.6 0.1 3 21 833 852 831 852 0.90 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF112-201 - 913 1e-10 41.0 55.1 14 14 0.13 2e+02 1.7 0.2 3 11 861 869 859 871 0.85 Ubiquitin-Binding Zinc Finger XPA_N PF01286.18 32 ZNF112-201 - 913 7.6e-10 38.7 55.3 1 14 1.3 2.1e+03 -1.1 0.1 4 13 233 242 232 248 0.72 XPA protein N-terminal XPA_N PF01286.18 32 ZNF112-201 - 913 7.6e-10 38.7 55.3 2 14 0.91 1.5e+03 -0.6 0.1 3 11 526 534 524 536 0.84 XPA protein N-terminal XPA_N PF01286.18 32 ZNF112-201 - 913 7.6e-10 38.7 55.3 3 14 0.0004 0.65 10.1 0.3 3 18 554 569 552 571 0.85 XPA protein N-terminal XPA_N PF01286.18 32 ZNF112-201 - 913 7.6e-10 38.7 55.3 4 14 0.0011 1.8 8.7 0.1 3 16 582 596 580 599 0.80 XPA protein N-terminal XPA_N PF01286.18 32 ZNF112-201 - 913 7.6e-10 38.7 55.3 5 14 0.0016 2.6 8.2 0.2 3 14 610 621 608 625 0.88 XPA protein N-terminal XPA_N PF01286.18 32 ZNF112-201 - 913 7.6e-10 38.7 55.3 6 14 0.0014 2.3 8.4 0.3 3 15 638 650 636 654 0.89 XPA protein N-terminal XPA_N PF01286.18 32 ZNF112-201 - 913 7.6e-10 38.7 55.3 7 14 0.0035 5.7 7.1 0.1 3 13 666 676 664 683 0.83 XPA protein N-terminal XPA_N PF01286.18 32 ZNF112-201 - 913 7.6e-10 38.7 55.3 8 14 0.00074 1.2 9.2 0.4 3 18 694 710 692 713 0.81 XPA protein N-terminal XPA_N PF01286.18 32 ZNF112-201 - 913 7.6e-10 38.7 55.3 9 14 0.16 2.7e+02 1.7 0.0 3 13 722 732 720 738 0.81 XPA protein N-terminal XPA_N PF01286.18 32 ZNF112-201 - 913 7.6e-10 38.7 55.3 10 14 0.018 30 4.8 0.2 3 14 750 761 748 764 0.91 XPA protein N-terminal XPA_N PF01286.18 32 ZNF112-201 - 913 7.6e-10 38.7 55.3 11 14 0.16 2.5e+02 1.8 0.1 3 14 778 789 776 794 0.88 XPA protein N-terminal XPA_N PF01286.18 32 ZNF112-201 - 913 7.6e-10 38.7 55.3 12 14 0.03 50 4.1 0.1 3 12 806 815 804 821 0.90 XPA protein N-terminal XPA_N PF01286.18 32 ZNF112-201 - 913 7.6e-10 38.7 55.3 13 14 0.14 2.3e+02 2.0 0.1 3 12 834 843 832 848 0.87 XPA protein N-terminal XPA_N PF01286.18 32 ZNF112-201 - 913 7.6e-10 38.7 55.3 14 14 0.051 83 3.4 0.1 3 12 862 871 860 874 0.85 XPA protein N-terminal # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF112-201.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF112-201.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF112-201.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF112-201.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF112-201.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:59:36 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZNF112-202 - 907 3e-106 343.5 127.2 1 23 1.1 1.8e+03 -0.3 1.3 8 21 219 231 210 233 0.71 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF112-202 - 907 3e-106 343.5 127.2 2 23 0.0075 12 6.5 0.1 9 26 246 263 243 263 0.90 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF112-202 - 907 3e-106 343.5 127.2 3 23 0.0095 16 6.2 0.5 5 23 270 288 267 291 0.89 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF112-202 - 907 3e-106 343.5 127.2 4 23 0.039 64 4.2 1.7 6 26 316 336 309 336 0.79 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF112-202 - 907 3e-106 343.5 127.2 5 23 3.7 6e+03 -2.0 0.2 6 16 372 382 372 385 0.80 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF112-202 - 907 3e-106 343.5 127.2 6 23 0.03 49 4.6 0.0 2 16 396 410 396 419 0.88 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF112-202 - 907 3e-106 343.5 127.2 7 23 0.34 5.6e+02 1.3 0.0 7 24 429 446 428 448 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF112-202 - 907 3e-106 343.5 127.2 8 23 0.037 60 4.3 0.5 4 25 450 475 447 476 0.67 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF112-202 - 907 3e-106 343.5 127.2 9 23 2.1 3.4e+03 -1.2 0.2 5 14 483 492 479 494 0.79 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF112-202 - 907 3e-106 343.5 127.2 10 23 2.2e-10 3.7e-07 30.3 1.9 2 26 506 530 505 530 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF112-202 - 907 3e-106 343.5 127.2 11 23 1.1e-11 1.7e-08 34.5 0.5 2 25 534 557 534 558 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF112-202 - 907 3e-106 343.5 127.2 12 23 6.1e-12 9.9e-09 35.2 0.6 2 25 562 585 561 586 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF112-202 - 907 3e-106 343.5 127.2 13 23 3.1e-11 5e-08 33.0 0.6 2 25 590 613 589 614 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF112-202 - 907 3e-106 343.5 127.2 14 23 9.1e-11 1.5e-07 31.5 1.1 1 25 617 641 617 641 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF112-202 - 907 3e-106 343.5 127.2 15 23 1.1e-11 1.9e-08 34.4 0.4 1 25 645 669 645 670 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF112-202 - 907 3e-106 343.5 127.2 16 23 7e-12 1.1e-08 35.0 0.1 4 25 676 697 674 698 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF112-202 - 907 3e-106 343.5 127.2 17 23 1.6e-07 0.00026 21.3 0.1 2 25 702 725 701 726 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF112-202 - 907 3e-106 343.5 127.2 18 23 1.8e-08 2.9e-05 24.3 0.5 2 25 730 753 729 754 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF112-202 - 907 3e-106 343.5 127.2 19 23 1.1e-09 1.8e-06 28.1 0.5 2 25 758 781 757 782 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF112-202 - 907 3e-106 343.5 127.2 20 23 9.3e-07 0.0015 18.9 0.2 2 25 786 809 785 809 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF112-202 - 907 3e-106 343.5 127.2 21 23 3.6e-11 5.8e-08 32.8 0.8 1 25 813 837 813 838 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF112-202 - 907 3e-106 343.5 127.2 22 23 4.1e-12 6.6e-09 35.8 0.2 1 24 841 864 841 865 0.97 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF112-202 - 907 3e-106 343.5 127.2 23 23 0.081 1.3e+02 3.2 0.0 5 18 873 886 869 892 0.80 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZNF112-202 - 907 1.2e-76 249.1 105.5 1 19 0.043 71 4.2 0.1 1 8 225 232 225 241 0.86 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF112-202 - 907 1.2e-76 249.1 105.5 2 19 5.4 8.9e+03 -2.5 0.1 8 23 259 274 254 274 0.79 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF112-202 - 907 1.2e-76 249.1 105.5 3 19 0.024 39 5.0 0.2 6 21 285 300 283 301 0.93 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF112-202 - 907 1.2e-76 249.1 105.5 4 19 0.0087 14 6.3 0.1 9 23 389 403 388 403 0.95 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF112-202 - 907 1.2e-76 249.1 105.5 5 19 1.9 3.2e+03 -1.0 0.3 5 19 469 483 468 487 0.83 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF112-202 - 907 1.2e-76 249.1 105.5 6 19 0.26 4.2e+02 1.7 0.1 13 23 503 513 499 513 0.89 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF112-202 - 907 1.2e-76 249.1 105.5 7 19 3.5e-08 5.7e-05 23.3 1.2 1 23 519 541 519 541 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF112-202 - 907 1.2e-76 249.1 105.5 8 19 2.1e-09 3.5e-06 27.2 0.7 1 23 547 569 547 569 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF112-202 - 907 1.2e-76 249.1 105.5 9 19 8.5e-09 1.4e-05 25.3 0.5 1 23 575 597 575 597 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF112-202 - 907 1.2e-76 249.1 105.5 10 19 3.2e-09 5.2e-06 26.6 1.3 1 23 603 625 603 625 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF112-202 - 907 1.2e-76 249.1 105.5 11 19 9.7e-07 0.0016 18.8 0.3 1 23 631 653 631 653 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF112-202 - 907 1.2e-76 249.1 105.5 12 19 2.3e-08 3.8e-05 23.9 0.2 1 23 659 681 659 681 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF112-202 - 907 1.2e-76 249.1 105.5 13 19 2e-09 3.2e-06 27.3 1.0 1 23 687 709 687 709 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF112-202 - 907 1.2e-76 249.1 105.5 14 19 4.2e-07 0.00069 19.9 0.1 1 23 715 737 715 737 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF112-202 - 907 1.2e-76 249.1 105.5 15 19 2.9e-08 4.7e-05 23.6 0.5 1 23 743 765 743 765 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF112-202 - 907 1.2e-76 249.1 105.5 16 19 2.5e-07 0.00041 20.6 0.5 1 23 771 793 771 793 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF112-202 - 907 1.2e-76 249.1 105.5 17 19 2.6e-07 0.00042 20.6 1.2 1 23 799 821 799 821 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF112-202 - 907 1.2e-76 249.1 105.5 18 19 6.2e-10 1e-06 28.9 0.3 1 23 827 849 827 849 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF112-202 - 907 1.2e-76 249.1 105.5 19 19 2.5e-05 0.041 14.4 0.1 1 23 855 877 855 877 0.99 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZNF112-202 - 907 6.1e-37 123.1 116.6 1 18 3.3 5.5e+03 -1.2 0.1 1 8 225 232 225 239 0.87 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF112-202 - 907 6.1e-37 123.1 116.6 2 18 3.1 5.1e+03 -1.1 0.2 5 20 284 299 283 301 0.68 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF112-202 - 907 6.1e-37 123.1 116.6 3 18 0.84 1.4e+03 0.7 0.1 9 23 389 403 387 404 0.85 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF112-202 - 907 6.1e-37 123.1 116.6 4 18 3.6 5.9e+03 -1.3 0.2 5 19 469 483 468 487 0.74 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF112-202 - 907 6.1e-37 123.1 116.6 5 18 5.8 9.4e+03 -2.0 0.1 14 23 504 513 499 514 0.76 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF112-202 - 907 6.1e-37 123.1 116.6 6 18 8.7e-05 0.14 13.1 0.9 1 23 519 541 519 542 0.83 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF112-202 - 907 6.1e-37 123.1 116.6 7 18 1e-05 0.016 16.0 0.7 1 23 547 569 547 570 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF112-202 - 907 6.1e-37 123.1 116.6 8 18 5.7e-06 0.0093 16.7 0.5 1 23 575 597 575 598 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF112-202 - 907 6.1e-37 123.1 116.6 9 18 2.9e-06 0.0047 17.7 1.3 1 23 603 625 603 626 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF112-202 - 907 6.1e-37 123.1 116.6 10 18 0.0006 0.98 10.4 0.6 1 23 631 653 631 654 0.85 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF112-202 - 907 6.1e-37 123.1 116.6 11 18 7e-06 0.011 16.4 0.3 1 23 659 681 659 682 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF112-202 - 907 6.1e-37 123.1 116.6 12 18 7.9e-06 0.013 16.3 1.2 1 23 687 709 687 710 0.90 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF112-202 - 907 6.1e-37 123.1 116.6 13 18 1.4e-05 0.023 15.5 0.2 1 23 715 737 715 738 0.89 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF112-202 - 907 6.1e-37 123.1 116.6 14 18 5.4e-06 0.0088 16.8 0.6 1 23 743 765 743 766 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF112-202 - 907 6.1e-37 123.1 116.6 15 18 3.7e-06 0.0061 17.3 0.6 1 23 771 793 771 794 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF112-202 - 907 6.1e-37 123.1 116.6 16 18 2.3e-06 0.0038 17.9 1.2 1 23 799 821 799 822 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF112-202 - 907 6.1e-37 123.1 116.6 17 18 1.5e-06 0.0024 18.5 0.4 1 23 827 849 827 850 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF112-202 - 907 6.1e-37 123.1 116.6 18 18 0.001 1.6 9.8 0.2 1 23 855 877 855 878 0.88 C2H2-type zinc finger zf-C2H2_jaz PF12171.8 27 ZNF112-202 - 907 2e-34 117.1 32.2 1 13 0.00071 1.2 9.6 0.1 2 22 519 539 518 539 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF112-202 - 907 2e-34 117.1 32.2 2 13 2.1e-06 0.0034 17.6 0.1 2 22 547 567 546 567 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF112-202 - 907 2e-34 117.1 32.2 3 13 0.00012 0.19 12.1 0.0 2 22 575 595 574 595 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF112-202 - 907 2e-34 117.1 32.2 4 13 5e-05 0.082 13.2 0.0 2 22 603 623 602 623 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF112-202 - 907 2e-34 117.1 32.2 5 13 0.0099 16 5.9 0.1 2 20 631 649 630 651 0.77 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF112-202 - 907 2e-34 117.1 32.2 6 13 1.5e-05 0.024 14.9 0.0 2 22 659 679 658 679 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF112-202 - 907 2e-34 117.1 32.2 7 13 0.018 29 5.1 0.2 4 21 689 706 686 707 0.90 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF112-202 - 907 2e-34 117.1 32.2 8 13 0.0019 3 8.2 0.0 2 22 715 735 714 735 0.90 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF112-202 - 907 2e-34 117.1 32.2 9 13 0.0013 2.1 8.7 0.0 2 21 743 762 742 763 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF112-202 - 907 2e-34 117.1 32.2 10 13 0.00026 0.42 11.0 0.0 2 22 771 791 770 791 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF112-202 - 907 2e-34 117.1 32.2 11 13 0.0048 7.9 6.9 0.1 2 20 799 817 798 818 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF112-202 - 907 2e-34 117.1 32.2 12 13 0.00011 0.18 12.2 0.0 2 22 827 847 826 847 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF112-202 - 907 2e-34 117.1 32.2 13 13 0.075 1.2e+02 3.1 0.0 2 11 855 864 854 874 0.90 Zinc-finger double-stranded RNA-binding KRAB PF01352.27 42 ZNF112-202 - 907 1.5e-19 69.3 1.0 1 2 9.3e-23 1.5e-19 69.3 1.0 1 40 1 40 1 41 0.96 KRAB box KRAB PF01352.27 42 ZNF112-202 - 907 1.5e-19 69.3 1.0 2 2 2.5 4e+03 -2.4 0.1 10 24 91 105 84 106 0.75 KRAB box zf-met PF12874.7 25 ZNF112-202 - 907 3e-14 52.8 67.9 1 13 6.8e-05 0.11 12.9 0.6 1 21 519 539 519 541 0.93 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF112-202 - 907 3e-14 52.8 67.9 2 13 0.00013 0.21 12.0 0.6 1 21 547 567 547 569 0.93 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF112-202 - 907 3e-14 52.8 67.9 3 13 0.0044 7.2 7.2 0.2 1 21 575 595 575 597 0.92 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF112-202 - 907 3e-14 52.8 67.9 4 13 0.003 4.9 7.7 0.4 1 21 603 623 603 625 0.92 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF112-202 - 907 3e-14 52.8 67.9 5 13 0.58 9.4e+02 0.4 0.3 1 19 631 649 631 653 0.78 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF112-202 - 907 3e-14 52.8 67.9 6 13 0.0024 3.9 8.0 0.2 1 21 659 679 659 681 0.93 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF112-202 - 907 3e-14 52.8 67.9 7 13 0.00065 1.1 9.8 0.8 1 19 687 705 687 708 0.94 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF112-202 - 907 3e-14 52.8 67.9 8 13 0.00046 0.75 10.3 0.1 1 21 715 735 715 737 0.92 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF112-202 - 907 3e-14 52.8 67.9 9 13 0.012 19 5.8 0.1 1 19 743 761 743 765 0.90 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF112-202 - 907 3e-14 52.8 67.9 10 13 0.026 43 4.7 0.4 1 20 771 790 771 793 0.85 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF112-202 - 907 3e-14 52.8 67.9 11 13 0.8 1.3e+03 -0.0 0.8 1 19 799 817 799 821 0.91 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF112-202 - 907 3e-14 52.8 67.9 12 13 3.7e-05 0.061 13.7 0.3 1 21 827 847 827 849 0.93 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF112-202 - 907 3e-14 52.8 67.9 13 13 0.44 7.2e+02 0.8 0.0 1 10 855 864 855 873 0.90 Zinc-finger of C2H2 type Zn-ribbon_8 PF09723.10 40 ZNF112-202 - 907 1.2e-11 44.5 73.8 1 14 0.049 79 3.5 0.3 6 16 225 235 221 254 0.78 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF112-202 - 907 1.2e-11 44.5 73.8 2 14 2.3 3.7e+03 -1.9 0.0 6 18 437 449 436 459 0.71 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF112-202 - 907 1.2e-11 44.5 73.8 3 14 0.00024 0.39 10.9 2.8 6 34 519 554 518 559 0.90 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF112-202 - 907 1.2e-11 44.5 73.8 4 14 0.00042 0.68 10.1 6.7 6 36 547 584 546 587 0.90 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF112-202 - 907 1.2e-11 44.5 73.8 5 14 0.00029 0.48 10.6 6.3 6 36 575 612 574 615 0.87 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF112-202 - 907 1.2e-11 44.5 73.8 6 14 0.0018 2.9 8.1 6.3 6 34 603 638 602 640 0.85 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF112-202 - 907 1.2e-11 44.5 73.8 7 14 5e-05 0.082 13.0 3.8 6 35 631 667 630 672 0.89 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF112-202 - 907 1.2e-11 44.5 73.8 8 14 5e-05 0.081 13.1 5.1 6 35 659 695 658 699 0.89 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF112-202 - 907 1.2e-11 44.5 73.8 9 14 5.4e-05 0.088 12.9 2.2 6 35 687 724 686 729 0.87 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF112-202 - 907 1.2e-11 44.5 73.8 10 14 0.0057 9.2 6.5 3.6 6 32 743 776 742 778 0.73 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF112-202 - 907 1.2e-11 44.5 73.8 11 14 0.011 17 5.6 4.9 6 34 771 806 770 809 0.83 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF112-202 - 907 1.2e-11 44.5 73.8 12 14 0.00014 0.23 11.6 3.9 6 34 799 834 798 839 0.86 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF112-202 - 907 1.2e-11 44.5 73.8 13 14 0.00017 0.27 11.4 2.9 6 34 827 862 825 865 0.91 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF112-202 - 907 1.2e-11 44.5 73.8 14 14 0.013 22 5.3 0.2 6 16 855 865 854 877 0.88 Zinc ribbon domain zf_UBZ PF18439.1 32 ZNF112-202 - 907 9.5e-11 41.1 55.1 1 14 0.07 1.1e+02 2.5 0.1 1 12 223 234 223 239 0.87 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF112-202 - 907 9.5e-11 41.1 55.1 2 14 0.36 5.8e+02 0.2 0.1 3 12 519 528 517 534 0.83 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF112-202 - 907 9.5e-11 41.1 55.1 3 14 0.004 6.6 6.4 0.2 3 20 547 565 545 566 0.83 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF112-202 - 907 9.5e-11 41.1 55.1 4 14 0.0036 5.8 6.6 0.1 3 15 575 587 573 594 0.79 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF112-202 - 907 9.5e-11 41.1 55.1 5 14 0.0021 3.4 7.4 0.3 3 20 603 621 601 622 0.79 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF112-202 - 907 9.5e-11 41.1 55.1 6 14 0.0094 15 5.3 0.1 3 14 631 642 629 650 0.76 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF112-202 - 907 9.5e-11 41.1 55.1 7 14 0.0014 2.3 7.9 0.1 3 21 659 678 657 678 0.84 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF112-202 - 907 9.5e-11 41.1 55.1 8 14 0.00011 0.18 11.5 0.3 3 21 687 706 685 706 0.90 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF112-202 - 907 9.5e-11 41.1 55.1 9 14 0.064 1.1e+02 2.6 0.0 3 15 715 727 713 734 0.81 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF112-202 - 907 9.5e-11 41.1 55.1 10 14 0.0064 10 5.8 0.1 3 19 743 759 741 762 0.86 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF112-202 - 907 9.5e-11 41.1 55.1 11 14 0.017 27 4.4 0.2 3 21 771 790 769 790 0.89 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF112-202 - 907 9.5e-11 41.1 55.1 12 14 0.0047 7.7 6.2 0.1 3 20 799 817 797 818 0.81 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF112-202 - 907 9.5e-11 41.1 55.1 13 14 0.015 25 4.6 0.1 3 21 827 846 825 846 0.90 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF112-202 - 907 9.5e-11 41.1 55.1 14 14 0.12 2e+02 1.7 0.2 3 11 855 863 853 865 0.85 Ubiquitin-Binding Zinc Finger XPA_N PF01286.18 32 ZNF112-202 - 907 6.9e-10 38.8 55.3 1 14 1.3 2.1e+03 -1.1 0.1 4 13 227 236 226 242 0.72 XPA protein N-terminal XPA_N PF01286.18 32 ZNF112-202 - 907 6.9e-10 38.8 55.3 2 14 0.9 1.5e+03 -0.6 0.1 3 11 520 528 518 530 0.84 XPA protein N-terminal XPA_N PF01286.18 32 ZNF112-202 - 907 6.9e-10 38.8 55.3 3 14 0.0004 0.65 10.1 0.3 3 18 548 563 546 565 0.85 XPA protein N-terminal XPA_N PF01286.18 32 ZNF112-202 - 907 6.9e-10 38.8 55.3 4 14 0.0011 1.8 8.7 0.1 3 16 576 590 574 593 0.80 XPA protein N-terminal XPA_N PF01286.18 32 ZNF112-202 - 907 6.9e-10 38.8 55.3 5 14 0.0016 2.6 8.2 0.2 3 14 604 615 602 619 0.88 XPA protein N-terminal XPA_N PF01286.18 32 ZNF112-202 - 907 6.9e-10 38.8 55.3 6 14 0.0014 2.2 8.4 0.3 3 15 632 644 630 648 0.89 XPA protein N-terminal XPA_N PF01286.18 32 ZNF112-202 - 907 6.9e-10 38.8 55.3 7 14 0.0035 5.7 7.1 0.1 3 13 660 670 658 677 0.83 XPA protein N-terminal XPA_N PF01286.18 32 ZNF112-202 - 907 6.9e-10 38.8 55.3 8 14 0.00073 1.2 9.2 0.4 3 18 688 704 686 707 0.81 XPA protein N-terminal XPA_N PF01286.18 32 ZNF112-202 - 907 6.9e-10 38.8 55.3 9 14 0.16 2.6e+02 1.7 0.0 3 13 716 726 714 732 0.81 XPA protein N-terminal XPA_N PF01286.18 32 ZNF112-202 - 907 6.9e-10 38.8 55.3 10 14 0.018 29 4.8 0.2 3 14 744 755 742 758 0.91 XPA protein N-terminal XPA_N PF01286.18 32 ZNF112-202 - 907 6.9e-10 38.8 55.3 11 14 0.15 2.5e+02 1.8 0.1 3 14 772 783 770 788 0.88 XPA protein N-terminal XPA_N PF01286.18 32 ZNF112-202 - 907 6.9e-10 38.8 55.3 12 14 0.03 49 4.1 0.1 3 12 800 809 798 815 0.90 XPA protein N-terminal XPA_N PF01286.18 32 ZNF112-202 - 907 6.9e-10 38.8 55.3 13 14 0.14 2.3e+02 2.0 0.1 3 12 828 837 826 842 0.87 XPA protein N-terminal XPA_N PF01286.18 32 ZNF112-202 - 907 6.9e-10 38.8 55.3 14 14 0.05 82 3.4 0.1 3 12 856 865 854 868 0.85 XPA protein N-terminal # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF112-202.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF112-202.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF112-202.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF112-202.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF112-202.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:59:37 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF112-203.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF112-203.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF112-203.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF112-203.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF112-203.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:59:37 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF112-204.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF112-204.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF112-204.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF112-204.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF112-204.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:59:38 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF112-205.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF112-205.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF112-205.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF112-205.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF112-205.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:59:38 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF112-206.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF112-206.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF112-206.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF112-206.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF112-206.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:59:38 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZNF114-201 - 417 3.6e-25 87.2 44.2 1 6 5.7 4.2e+03 -1.5 0.0 5 13 126 135 124 149 0.82 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF114-201 - 417 3.6e-25 87.2 44.2 2 6 0.0016 1.2 9.7 5.5 10 24 299 313 293 315 0.86 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF114-201 - 417 3.6e-25 87.2 44.2 3 6 1.3e-12 9.8e-10 38.4 1.2 2 25 319 342 318 343 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF114-201 - 417 3.6e-25 87.2 44.2 4 6 3.5e-08 2.6e-05 24.4 2.3 1 22 346 368 346 370 0.87 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF114-201 - 417 3.6e-25 87.2 44.2 5 6 4.3e-10 3.2e-07 30.5 3.2 5 25 378 398 376 399 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF114-201 - 417 3.6e-25 87.2 44.2 6 6 0.0095 7.1 7.2 0.4 1 14 402 415 402 417 0.92 Zinc-finger double domain KRAB PF01352.27 42 ZNF114-201 - 417 2.1e-24 84.9 0.1 1 1 6.8e-27 5.1e-24 83.7 0.1 1 42 5 46 5 46 0.98 KRAB box zf-C2H2 PF00096.26 23 ZNF114-201 - 417 3.9e-19 68.0 28.6 1 4 7.1e-08 5.3e-05 23.4 2.6 1 23 304 326 304 326 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF114-201 - 417 3.9e-19 68.0 28.6 2 4 8e-08 6e-05 23.3 2.8 1 23 332 354 332 354 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF114-201 - 417 3.9e-19 68.0 28.6 3 4 0.00085 0.64 10.6 0.3 1 23 361 382 361 382 0.94 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF114-201 - 417 3.9e-19 68.0 28.6 4 4 2.2e-08 1.6e-05 25.1 1.7 1 23 388 410 388 410 0.99 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZNF114-201 - 417 5.4e-12 45.5 29.7 1 4 7.3e-06 0.0055 17.5 2.0 1 23 304 326 304 327 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF114-201 - 417 5.4e-12 45.5 29.7 2 4 2.2e-05 0.016 16.0 1.8 1 23 332 354 332 355 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF114-201 - 417 5.4e-12 45.5 29.7 3 4 0.0046 3.4 8.7 0.5 1 23 361 382 361 383 0.90 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF114-201 - 417 5.4e-12 45.5 29.7 4 4 9.7e-07 0.00072 20.2 1.6 1 23 388 410 388 411 0.96 C2H2-type zinc finger # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF114-201.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF114-201.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF114-201.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF114-201.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF114-201.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:59:39 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF114-202.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF114-202.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF114-202.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF114-202.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF114-202.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:59:39 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF114-203.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF114-203.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF114-203.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF114-203.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF114-203.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:59:39 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZNF114-204 - 417 3.6e-25 87.2 44.2 1 6 5.7 4.2e+03 -1.5 0.0 5 13 126 135 124 149 0.82 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF114-204 - 417 3.6e-25 87.2 44.2 2 6 0.0016 1.2 9.7 5.5 10 24 299 313 293 315 0.86 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF114-204 - 417 3.6e-25 87.2 44.2 3 6 1.3e-12 9.8e-10 38.4 1.2 2 25 319 342 318 343 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF114-204 - 417 3.6e-25 87.2 44.2 4 6 3.5e-08 2.6e-05 24.4 2.3 1 22 346 368 346 370 0.87 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF114-204 - 417 3.6e-25 87.2 44.2 5 6 4.3e-10 3.2e-07 30.5 3.2 5 25 378 398 376 399 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF114-204 - 417 3.6e-25 87.2 44.2 6 6 0.0095 7.1 7.2 0.4 1 14 402 415 402 417 0.92 Zinc-finger double domain KRAB PF01352.27 42 ZNF114-204 - 417 2.1e-24 84.9 0.1 1 1 6.8e-27 5.1e-24 83.7 0.1 1 42 5 46 5 46 0.98 KRAB box zf-C2H2 PF00096.26 23 ZNF114-204 - 417 3.9e-19 68.0 28.6 1 4 7.1e-08 5.3e-05 23.4 2.6 1 23 304 326 304 326 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF114-204 - 417 3.9e-19 68.0 28.6 2 4 8e-08 6e-05 23.3 2.8 1 23 332 354 332 354 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF114-204 - 417 3.9e-19 68.0 28.6 3 4 0.00085 0.64 10.6 0.3 1 23 361 382 361 382 0.94 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF114-204 - 417 3.9e-19 68.0 28.6 4 4 2.2e-08 1.6e-05 25.1 1.7 1 23 388 410 388 410 0.99 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZNF114-204 - 417 5.4e-12 45.5 29.7 1 4 7.3e-06 0.0055 17.5 2.0 1 23 304 326 304 327 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF114-204 - 417 5.4e-12 45.5 29.7 2 4 2.2e-05 0.016 16.0 1.8 1 23 332 354 332 355 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF114-204 - 417 5.4e-12 45.5 29.7 3 4 0.0046 3.4 8.7 0.5 1 23 361 382 361 383 0.90 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF114-204 - 417 5.4e-12 45.5 29.7 4 4 9.7e-07 0.00072 20.2 1.6 1 23 388 410 388 411 0.96 C2H2-type zinc finger # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF114-204.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF114-204.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF114-204.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF114-204.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF114-204.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:59:40 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF114-205.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF114-205.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF114-205.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF114-205.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF114-205.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:59:40 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZNF114-206 - 417 3.6e-25 87.2 44.2 1 6 5.7 4.2e+03 -1.5 0.0 5 13 126 135 124 149 0.82 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF114-206 - 417 3.6e-25 87.2 44.2 2 6 0.0016 1.2 9.7 5.5 10 24 299 313 293 315 0.86 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF114-206 - 417 3.6e-25 87.2 44.2 3 6 1.3e-12 9.8e-10 38.4 1.2 2 25 319 342 318 343 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF114-206 - 417 3.6e-25 87.2 44.2 4 6 3.5e-08 2.6e-05 24.4 2.3 1 22 346 368 346 370 0.87 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF114-206 - 417 3.6e-25 87.2 44.2 5 6 4.3e-10 3.2e-07 30.5 3.2 5 25 378 398 376 399 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF114-206 - 417 3.6e-25 87.2 44.2 6 6 0.0095 7.1 7.2 0.4 1 14 402 415 402 417 0.92 Zinc-finger double domain KRAB PF01352.27 42 ZNF114-206 - 417 2.1e-24 84.9 0.1 1 1 6.8e-27 5.1e-24 83.7 0.1 1 42 5 46 5 46 0.98 KRAB box zf-C2H2 PF00096.26 23 ZNF114-206 - 417 3.9e-19 68.0 28.6 1 4 7.1e-08 5.3e-05 23.4 2.6 1 23 304 326 304 326 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF114-206 - 417 3.9e-19 68.0 28.6 2 4 8e-08 6e-05 23.3 2.8 1 23 332 354 332 354 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF114-206 - 417 3.9e-19 68.0 28.6 3 4 0.00085 0.64 10.6 0.3 1 23 361 382 361 382 0.94 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF114-206 - 417 3.9e-19 68.0 28.6 4 4 2.2e-08 1.6e-05 25.1 1.7 1 23 388 410 388 410 0.99 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZNF114-206 - 417 5.4e-12 45.5 29.7 1 4 7.3e-06 0.0055 17.5 2.0 1 23 304 326 304 327 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF114-206 - 417 5.4e-12 45.5 29.7 2 4 2.2e-05 0.016 16.0 1.8 1 23 332 354 332 355 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF114-206 - 417 5.4e-12 45.5 29.7 3 4 0.0046 3.4 8.7 0.5 1 23 361 382 361 383 0.90 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF114-206 - 417 5.4e-12 45.5 29.7 4 4 9.7e-07 0.00072 20.2 1.6 1 23 388 410 388 411 0.96 C2H2-type zinc finger # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF114-206.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF114-206.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF114-206.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF114-206.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF114-206.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:59:40 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF114-207.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF114-207.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF114-207.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF114-207.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF114-207.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:59:41 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZNF121-201 - 390 4.7e-76 248.1 79.2 1 14 3.3 1.9e+03 -0.5 0.0 2 21 26 45 26 48 0.69 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF121-201 - 390 4.7e-76 248.1 79.2 2 14 5.7 3.4e+03 -1.2 0.1 19 25 66 72 65 72 0.84 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF121-201 - 390 4.7e-76 248.1 79.2 3 14 0.49 2.9e+02 2.1 0.0 5 25 78 98 76 99 0.82 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF121-201 - 390 4.7e-76 248.1 79.2 4 14 0.027 16 6.1 0.0 7 25 107 126 100 127 0.80 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF121-201 - 390 4.7e-76 248.1 79.2 5 14 3.7e-08 2.2e-05 24.7 1.8 6 25 135 154 129 155 0.87 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF121-201 - 390 4.7e-76 248.1 79.2 6 14 7.3e-12 4.4e-09 36.4 3.8 2 25 159 182 158 182 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF121-201 - 390 4.7e-76 248.1 79.2 7 14 3e-11 1.8e-08 34.4 0.5 1 25 186 210 186 210 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF121-201 - 390 4.7e-76 248.1 79.2 8 14 7.1e-12 4.2e-09 36.4 0.4 1 25 214 238 214 239 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF121-201 - 390 4.7e-76 248.1 79.2 9 14 1.1e-09 6.4e-07 29.5 2.9 2 25 243 266 243 267 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF121-201 - 390 4.7e-76 248.1 79.2 10 14 2.5e-10 1.5e-07 31.5 1.7 2 25 271 294 271 294 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF121-201 - 390 4.7e-76 248.1 79.2 11 14 7.3e-11 4.4e-08 33.2 1.2 4 26 301 323 298 323 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF121-201 - 390 4.7e-76 248.1 79.2 12 14 1.5e-09 9e-07 29.1 0.6 3 24 328 349 326 350 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF121-201 - 390 4.7e-76 248.1 79.2 13 14 1.2e-09 7.1e-07 29.4 0.9 1 25 354 378 354 379 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF121-201 - 390 4.7e-76 248.1 79.2 14 14 3.3 1.9e+03 -0.5 0.5 2 9 383 390 383 390 0.93 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZNF121-201 - 390 4.1e-58 190.7 77.6 1 13 0.75 4.5e+02 1.6 0.0 8 20 18 30 10 32 0.85 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF121-201 - 390 4.1e-58 190.7 77.6 2 13 9.2 5.5e+03 -1.8 0.0 5 11 66 72 65 80 0.77 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF121-201 - 390 4.1e-58 190.7 77.6 3 13 0.046 27 5.5 0.0 5 17 92 104 91 105 0.92 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF121-201 - 390 4.1e-58 190.7 77.6 4 13 0.9 5.4e+02 1.4 0.1 5 13 120 128 119 130 0.82 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF121-201 - 390 4.1e-58 190.7 77.6 5 13 4.1e-09 2.5e-06 27.6 3.0 1 23 144 166 144 166 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF121-201 - 390 4.1e-58 190.7 77.6 6 13 3.6e-08 2.2e-05 24.7 2.4 1 23 172 194 172 194 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF121-201 - 390 4.1e-58 190.7 77.6 7 13 6.1e-08 3.7e-05 23.9 0.1 1 23 200 222 200 222 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF121-201 - 390 4.1e-58 190.7 77.6 8 13 5.7e-07 0.00034 20.9 1.1 1 23 228 250 228 250 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF121-201 - 390 4.1e-58 190.7 77.6 9 13 1.4e-07 8.1e-05 22.9 4.1 1 23 256 278 256 278 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF121-201 - 390 4.1e-58 190.7 77.6 10 13 1.3e-07 7.5e-05 23.0 1.5 1 23 284 306 284 306 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF121-201 - 390 4.1e-58 190.7 77.6 11 13 3.7e-10 2.2e-07 30.9 0.1 1 23 312 334 312 334 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF121-201 - 390 4.1e-58 190.7 77.6 12 13 3.1e-09 1.8e-06 28.1 1.7 1 23 340 362 340 362 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF121-201 - 390 4.1e-58 190.7 77.6 13 13 4.8e-08 2.9e-05 24.3 1.1 1 23 368 390 368 390 0.98 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZNF121-201 - 390 5.1e-35 117.1 74.8 1 13 2.5 1.5e+03 0.5 0.0 8 21 18 31 11 33 0.83 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF121-201 - 390 5.1e-35 117.1 74.8 2 13 8.3 5e+03 -1.1 0.0 5 20 66 79 65 82 0.63 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF121-201 - 390 5.1e-35 117.1 74.8 3 13 5.9 3.5e+03 -0.6 0.0 5 17 92 104 91 105 0.85 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF121-201 - 390 5.1e-35 117.1 74.8 4 13 2.5 1.5e+03 0.5 0.1 5 14 120 129 119 136 0.76 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF121-201 - 390 5.1e-35 117.1 74.8 5 13 7.5e-06 0.0045 17.7 2.0 1 23 144 166 144 167 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF121-201 - 390 5.1e-35 117.1 74.8 6 13 0.00012 0.071 14.0 2.9 1 23 172 194 172 195 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF121-201 - 390 5.1e-35 117.1 74.8 7 13 5.7e-06 0.0034 18.1 0.1 1 23 200 222 200 223 0.97 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF121-201 - 390 5.1e-35 117.1 74.8 8 13 9.5e-05 0.057 14.3 0.8 1 23 228 250 228 251 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF121-201 - 390 5.1e-35 117.1 74.8 9 13 1.5e-06 0.00087 19.9 3.9 1 23 256 278 256 279 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF121-201 - 390 5.1e-35 117.1 74.8 10 13 4.6e-06 0.0027 18.4 1.5 1 23 284 306 284 307 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF121-201 - 390 5.1e-35 117.1 74.8 11 13 8.9e-07 0.00053 20.6 0.1 1 23 312 334 312 335 0.97 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF121-201 - 390 5.1e-35 117.1 74.8 12 13 2.1e-06 0.0012 19.5 1.4 1 23 340 362 340 363 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF121-201 - 390 5.1e-35 117.1 74.8 13 13 2.4e-05 0.014 16.2 0.7 1 23 368 390 368 390 0.97 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF121-201 - 390 3.8e-21 74.6 69.2 1 10 3.9 2.4e+03 -1.3 0.1 5 13 119 127 119 129 0.86 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF121-201 - 390 3.8e-21 74.6 69.2 2 10 6.9e-06 0.0041 17.1 2.6 2 24 144 166 144 169 0.96 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF121-201 - 390 3.8e-21 74.6 69.2 3 10 0.084 50 4.0 4.5 2 11 172 181 172 182 0.90 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF121-201 - 390 3.8e-21 74.6 69.2 4 10 0.0097 5.8 7.0 0.1 2 12 200 210 200 222 0.86 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF121-201 - 390 3.8e-21 74.6 69.2 5 10 3.7e-06 0.0022 18.0 1.4 2 25 228 251 228 253 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF121-201 - 390 3.8e-21 74.6 69.2 6 10 6.7e-05 0.04 13.9 2.0 2 13 256 267 256 268 0.96 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF121-201 - 390 3.8e-21 74.6 69.2 7 10 0.0014 0.84 9.7 0.8 2 11 284 293 284 302 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF121-201 - 390 3.8e-21 74.6 69.2 8 10 0.00015 0.089 12.8 0.2 2 24 312 334 312 337 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF121-201 - 390 3.8e-21 74.6 69.2 9 10 0.00032 0.19 11.8 0.3 2 12 340 350 340 351 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF121-201 - 390 3.8e-21 74.6 69.2 10 10 7.3e-07 0.00043 20.2 1.5 2 24 368 390 368 390 0.99 C2H2-type zinc finger zf-C2H2_jaz PF12171.8 27 ZNF121-201 - 390 3.3e-14 52.7 41.7 1 9 0.0051 3.1 8.2 1.1 2 24 144 166 143 166 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF121-201 - 390 3.3e-14 52.7 41.7 2 9 0.41 2.5e+02 2.1 0.6 2 20 172 190 171 192 0.73 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF121-201 - 390 3.3e-14 52.7 41.7 3 9 0.072 43 4.5 0.0 4 22 202 220 199 220 0.89 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF121-201 - 390 3.3e-14 52.7 41.7 4 9 0.087 52 4.3 0.8 2 24 228 250 227 250 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF121-201 - 390 3.3e-14 52.7 41.7 5 9 2.4e-05 0.014 15.7 0.6 2 22 256 276 255 276 0.95 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF121-201 - 390 3.3e-14 52.7 41.7 6 9 0.003 1.8 9.0 0.2 2 22 284 304 283 304 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF121-201 - 390 3.3e-14 52.7 41.7 7 9 1.2e-05 0.0072 16.6 0.1 2 24 312 334 311 334 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF121-201 - 390 3.3e-14 52.7 41.7 8 9 0.00037 0.22 11.9 0.1 2 22 340 360 339 360 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF121-201 - 390 3.3e-14 52.7 41.7 9 9 0.055 33 4.9 0.4 2 24 368 390 367 390 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_11 PF16622.5 29 ZNF121-201 - 390 2.1e-11 43.4 48.1 1 10 0.43 2.6e+02 1.5 0.2 9 17 120 128 119 130 0.81 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF121-201 - 390 2.1e-11 43.4 48.1 2 10 0.14 82 3.1 0.5 6 25 145 164 143 166 0.85 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF121-201 - 390 2.1e-11 43.4 48.1 3 10 5.5e-05 0.033 14.0 0.5 6 26 173 193 170 194 0.92 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF121-201 - 390 2.1e-11 43.4 48.1 4 10 5.6e-06 0.0033 17.1 0.1 5 26 200 221 197 222 0.95 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF121-201 - 390 2.1e-11 43.4 48.1 5 10 0.94 5.6e+02 0.4 0.1 6 14 229 237 227 244 0.88 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF121-201 - 390 2.1e-11 43.4 48.1 6 10 0.0074 4.4 7.2 1.6 6 26 257 277 253 278 0.92 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF121-201 - 390 2.1e-11 43.4 48.1 7 10 2.6e-05 0.016 15.0 0.2 5 26 284 305 283 306 0.93 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF121-201 - 390 2.1e-11 43.4 48.1 8 10 0.078 46 3.9 0.0 6 23 313 330 310 333 0.81 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF121-201 - 390 2.1e-11 43.4 48.1 9 10 0.011 6.4 6.6 1.3 7 26 342 361 340 362 0.95 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF121-201 - 390 2.1e-11 43.4 48.1 10 10 0.35 2.1e+02 1.8 0.1 7 24 370 387 368 389 0.84 zinc-finger C2H2-type Zn-ribbon_8 PF09723.10 40 ZNF121-201 - 390 7.2e-11 42.0 49.1 1 7 0.002 1.2 9.3 0.4 9 34 119 151 116 156 0.79 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF121-201 - 390 7.2e-11 42.0 49.1 2 7 0.00087 0.52 10.5 7.8 6 34 172 207 171 211 0.89 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF121-201 - 390 7.2e-11 42.0 49.1 3 7 5.5e-05 0.033 14.3 3.8 6 38 200 239 199 241 0.90 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF121-201 - 390 7.2e-11 42.0 49.1 4 7 0.0066 4 7.6 5.5 6 35 228 264 227 268 0.77 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF121-201 - 390 7.2e-11 42.0 49.1 5 7 2.6e-05 0.015 15.4 3.9 6 34 284 319 282 324 0.85 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF121-201 - 390 7.2e-11 42.0 49.1 6 7 0.0061 3.7 7.8 0.5 6 16 312 322 310 335 0.85 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF121-201 - 390 7.2e-11 42.0 49.1 7 7 8.4e-06 0.005 16.9 1.3 6 38 340 379 338 381 0.89 Zinc ribbon domain XPA_N PF01286.18 32 ZNF121-201 - 390 4.1e-09 36.3 43.8 1 11 7.4 4.4e+03 -2.2 0.1 6 13 92 99 91 103 0.83 XPA protein N-terminal XPA_N PF01286.18 32 ZNF121-201 - 390 4.1e-09 36.3 43.8 2 11 7.8 4.6e+03 -2.2 0.0 6 14 120 128 119 128 0.80 XPA protein N-terminal XPA_N PF01286.18 32 ZNF121-201 - 390 4.1e-09 36.3 43.8 3 11 0.0054 3.2 7.9 0.5 3 18 145 160 143 162 0.86 XPA protein N-terminal XPA_N PF01286.18 32 ZNF121-201 - 390 4.1e-09 36.3 43.8 4 11 0.017 9.9 6.3 0.7 3 14 173 184 171 189 0.89 XPA protein N-terminal XPA_N PF01286.18 32 ZNF121-201 - 390 4.1e-09 36.3 43.8 5 11 0.034 20 5.3 0.1 3 12 201 210 199 213 0.89 XPA protein N-terminal XPA_N PF01286.18 32 ZNF121-201 - 390 4.1e-09 36.3 43.8 6 11 0.029 17 5.5 0.2 3 18 229 244 227 249 0.84 XPA protein N-terminal XPA_N PF01286.18 32 ZNF121-201 - 390 4.1e-09 36.3 43.8 7 11 0.056 33 4.6 0.9 3 15 257 269 255 277 0.69 XPA protein N-terminal XPA_N PF01286.18 32 ZNF121-201 - 390 4.1e-09 36.3 43.8 8 11 0.0017 1 9.4 0.1 3 14 285 296 283 301 0.90 XPA protein N-terminal XPA_N PF01286.18 32 ZNF121-201 - 390 4.1e-09 36.3 43.8 9 11 0.0019 1.1 9.3 0.1 3 14 313 324 311 330 0.87 XPA protein N-terminal XPA_N PF01286.18 32 ZNF121-201 - 390 4.1e-09 36.3 43.8 10 11 0.0032 1.9 8.6 0.1 3 14 341 352 339 358 0.82 XPA protein N-terminal XPA_N PF01286.18 32 ZNF121-201 - 390 4.1e-09 36.3 43.8 11 11 0.04 24 5.1 0.1 3 18 369 384 367 387 0.86 XPA protein N-terminal zinc_ribbon_15 PF17032.5 86 ZNF121-201 - 390 1.1e-07 32.5 38.7 1 10 1.8 1.1e+03 0.5 0.1 36 73 86 123 57 132 0.67 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF121-201 - 390 1.1e-07 32.5 38.7 2 10 0.0066 4 8.3 0.7 34 74 112 152 106 161 0.87 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF121-201 - 390 1.1e-07 32.5 38.7 3 10 0.0037 2.2 9.1 4.2 31 74 137 180 126 186 0.83 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF121-201 - 390 1.1e-07 32.5 38.7 4 10 0.0011 0.64 10.8 1.7 31 75 165 209 155 215 0.88 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF121-201 - 390 1.1e-07 32.5 38.7 5 10 0.00034 0.2 12.4 0.5 26 75 188 237 182 246 0.89 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF121-201 - 390 1.1e-07 32.5 38.7 6 10 0.014 8.2 7.3 3.2 30 77 220 267 217 272 0.87 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF121-201 - 390 1.1e-07 32.5 38.7 7 10 0.00074 0.44 11.3 2.9 27 76 245 294 235 299 0.86 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF121-201 - 390 1.1e-07 32.5 38.7 8 10 0.00023 0.14 12.9 1.2 31 77 277 323 273 327 0.85 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF121-201 - 390 1.1e-07 32.5 38.7 9 10 8.3e-06 0.0049 17.6 1.0 30 78 304 352 299 355 0.90 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF121-201 - 390 1.1e-07 32.5 38.7 10 10 6.3e-05 0.038 14.8 1.3 26 75 328 377 325 381 0.88 zinc-ribbon family zf_UBZ PF18439.1 32 ZNF121-201 - 390 1e-06 28.2 42.0 1 10 2.1 1.2e+03 -0.9 0.0 1 13 37 49 37 51 0.77 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF121-201 - 390 1e-06 28.2 42.0 2 10 0.026 15 5.2 0.1 3 12 144 153 142 163 0.80 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF121-201 - 390 1e-06 28.2 42.0 3 10 0.0064 3.8 7.2 1.8 3 20 172 190 170 190 0.87 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF121-201 - 390 1e-06 28.2 42.0 4 10 0.056 33 4.2 0.1 3 12 200 209 198 213 0.86 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF121-201 - 390 1e-06 28.2 42.0 5 10 0.05 30 4.3 0.1 3 20 228 246 226 246 0.80 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF121-201 - 390 1e-06 28.2 42.0 6 10 0.43 2.6e+02 1.3 0.7 3 14 256 267 254 271 0.84 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF121-201 - 390 1e-06 28.2 42.0 7 10 0.0065 3.9 7.1 0.1 3 15 284 296 282 302 0.82 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF121-201 - 390 1e-06 28.2 42.0 8 10 0.00052 0.31 10.7 0.1 3 20 312 330 310 330 0.94 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF121-201 - 390 1e-06 28.2 42.0 9 10 0.003 1.8 8.3 0.3 3 17 340 355 338 358 0.78 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF121-201 - 390 1e-06 28.2 42.0 10 10 0.077 46 3.7 0.1 3 11 368 376 366 386 0.87 Ubiquitin-Binding Zinc Finger # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF121-201.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF121-201.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF121-201.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF121-201.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF121-201.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:59:41 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZNF121-202 - 390 4.7e-76 248.1 79.2 1 14 3.3 1.9e+03 -0.5 0.0 2 21 26 45 26 48 0.69 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF121-202 - 390 4.7e-76 248.1 79.2 2 14 5.7 3.4e+03 -1.2 0.1 19 25 66 72 65 72 0.84 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF121-202 - 390 4.7e-76 248.1 79.2 3 14 0.49 2.9e+02 2.1 0.0 5 25 78 98 76 99 0.82 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF121-202 - 390 4.7e-76 248.1 79.2 4 14 0.027 16 6.1 0.0 7 25 107 126 100 127 0.80 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF121-202 - 390 4.7e-76 248.1 79.2 5 14 3.7e-08 2.2e-05 24.7 1.8 6 25 135 154 129 155 0.87 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF121-202 - 390 4.7e-76 248.1 79.2 6 14 7.3e-12 4.4e-09 36.4 3.8 2 25 159 182 158 182 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF121-202 - 390 4.7e-76 248.1 79.2 7 14 3e-11 1.8e-08 34.4 0.5 1 25 186 210 186 210 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF121-202 - 390 4.7e-76 248.1 79.2 8 14 7.1e-12 4.2e-09 36.4 0.4 1 25 214 238 214 239 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF121-202 - 390 4.7e-76 248.1 79.2 9 14 1.1e-09 6.4e-07 29.5 2.9 2 25 243 266 243 267 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF121-202 - 390 4.7e-76 248.1 79.2 10 14 2.5e-10 1.5e-07 31.5 1.7 2 25 271 294 271 294 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF121-202 - 390 4.7e-76 248.1 79.2 11 14 7.3e-11 4.4e-08 33.2 1.2 4 26 301 323 298 323 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF121-202 - 390 4.7e-76 248.1 79.2 12 14 1.5e-09 9e-07 29.1 0.6 3 24 328 349 326 350 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF121-202 - 390 4.7e-76 248.1 79.2 13 14 1.2e-09 7.1e-07 29.4 0.9 1 25 354 378 354 379 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF121-202 - 390 4.7e-76 248.1 79.2 14 14 3.3 1.9e+03 -0.5 0.5 2 9 383 390 383 390 0.93 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZNF121-202 - 390 4.1e-58 190.7 77.6 1 13 0.75 4.5e+02 1.6 0.0 8 20 18 30 10 32 0.85 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF121-202 - 390 4.1e-58 190.7 77.6 2 13 9.2 5.5e+03 -1.8 0.0 5 11 66 72 65 80 0.77 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF121-202 - 390 4.1e-58 190.7 77.6 3 13 0.046 27 5.5 0.0 5 17 92 104 91 105 0.92 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF121-202 - 390 4.1e-58 190.7 77.6 4 13 0.9 5.4e+02 1.4 0.1 5 13 120 128 119 130 0.82 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF121-202 - 390 4.1e-58 190.7 77.6 5 13 4.1e-09 2.5e-06 27.6 3.0 1 23 144 166 144 166 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF121-202 - 390 4.1e-58 190.7 77.6 6 13 3.6e-08 2.2e-05 24.7 2.4 1 23 172 194 172 194 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF121-202 - 390 4.1e-58 190.7 77.6 7 13 6.1e-08 3.7e-05 23.9 0.1 1 23 200 222 200 222 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF121-202 - 390 4.1e-58 190.7 77.6 8 13 5.7e-07 0.00034 20.9 1.1 1 23 228 250 228 250 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF121-202 - 390 4.1e-58 190.7 77.6 9 13 1.4e-07 8.1e-05 22.9 4.1 1 23 256 278 256 278 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF121-202 - 390 4.1e-58 190.7 77.6 10 13 1.3e-07 7.5e-05 23.0 1.5 1 23 284 306 284 306 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF121-202 - 390 4.1e-58 190.7 77.6 11 13 3.7e-10 2.2e-07 30.9 0.1 1 23 312 334 312 334 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF121-202 - 390 4.1e-58 190.7 77.6 12 13 3.1e-09 1.8e-06 28.1 1.7 1 23 340 362 340 362 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF121-202 - 390 4.1e-58 190.7 77.6 13 13 4.8e-08 2.9e-05 24.3 1.1 1 23 368 390 368 390 0.98 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZNF121-202 - 390 5.1e-35 117.1 74.8 1 13 2.5 1.5e+03 0.5 0.0 8 21 18 31 11 33 0.83 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF121-202 - 390 5.1e-35 117.1 74.8 2 13 8.3 5e+03 -1.1 0.0 5 20 66 79 65 82 0.63 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF121-202 - 390 5.1e-35 117.1 74.8 3 13 5.9 3.5e+03 -0.6 0.0 5 17 92 104 91 105 0.85 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF121-202 - 390 5.1e-35 117.1 74.8 4 13 2.5 1.5e+03 0.5 0.1 5 14 120 129 119 136 0.76 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF121-202 - 390 5.1e-35 117.1 74.8 5 13 7.5e-06 0.0045 17.7 2.0 1 23 144 166 144 167 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF121-202 - 390 5.1e-35 117.1 74.8 6 13 0.00012 0.071 14.0 2.9 1 23 172 194 172 195 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF121-202 - 390 5.1e-35 117.1 74.8 7 13 5.7e-06 0.0034 18.1 0.1 1 23 200 222 200 223 0.97 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF121-202 - 390 5.1e-35 117.1 74.8 8 13 9.5e-05 0.057 14.3 0.8 1 23 228 250 228 251 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF121-202 - 390 5.1e-35 117.1 74.8 9 13 1.5e-06 0.00087 19.9 3.9 1 23 256 278 256 279 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF121-202 - 390 5.1e-35 117.1 74.8 10 13 4.6e-06 0.0027 18.4 1.5 1 23 284 306 284 307 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF121-202 - 390 5.1e-35 117.1 74.8 11 13 8.9e-07 0.00053 20.6 0.1 1 23 312 334 312 335 0.97 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF121-202 - 390 5.1e-35 117.1 74.8 12 13 2.1e-06 0.0012 19.5 1.4 1 23 340 362 340 363 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF121-202 - 390 5.1e-35 117.1 74.8 13 13 2.4e-05 0.014 16.2 0.7 1 23 368 390 368 390 0.97 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF121-202 - 390 3.8e-21 74.6 69.2 1 10 3.9 2.4e+03 -1.3 0.1 5 13 119 127 119 129 0.86 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF121-202 - 390 3.8e-21 74.6 69.2 2 10 6.9e-06 0.0041 17.1 2.6 2 24 144 166 144 169 0.96 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF121-202 - 390 3.8e-21 74.6 69.2 3 10 0.084 50 4.0 4.5 2 11 172 181 172 182 0.90 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF121-202 - 390 3.8e-21 74.6 69.2 4 10 0.0097 5.8 7.0 0.1 2 12 200 210 200 222 0.86 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF121-202 - 390 3.8e-21 74.6 69.2 5 10 3.7e-06 0.0022 18.0 1.4 2 25 228 251 228 253 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF121-202 - 390 3.8e-21 74.6 69.2 6 10 6.7e-05 0.04 13.9 2.0 2 13 256 267 256 268 0.96 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF121-202 - 390 3.8e-21 74.6 69.2 7 10 0.0014 0.84 9.7 0.8 2 11 284 293 284 302 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF121-202 - 390 3.8e-21 74.6 69.2 8 10 0.00015 0.089 12.8 0.2 2 24 312 334 312 337 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF121-202 - 390 3.8e-21 74.6 69.2 9 10 0.00032 0.19 11.8 0.3 2 12 340 350 340 351 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF121-202 - 390 3.8e-21 74.6 69.2 10 10 7.3e-07 0.00043 20.2 1.5 2 24 368 390 368 390 0.99 C2H2-type zinc finger zf-C2H2_jaz PF12171.8 27 ZNF121-202 - 390 3.3e-14 52.7 41.7 1 9 0.0051 3.1 8.2 1.1 2 24 144 166 143 166 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF121-202 - 390 3.3e-14 52.7 41.7 2 9 0.41 2.5e+02 2.1 0.6 2 20 172 190 171 192 0.73 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF121-202 - 390 3.3e-14 52.7 41.7 3 9 0.072 43 4.5 0.0 4 22 202 220 199 220 0.89 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF121-202 - 390 3.3e-14 52.7 41.7 4 9 0.087 52 4.3 0.8 2 24 228 250 227 250 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF121-202 - 390 3.3e-14 52.7 41.7 5 9 2.4e-05 0.014 15.7 0.6 2 22 256 276 255 276 0.95 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF121-202 - 390 3.3e-14 52.7 41.7 6 9 0.003 1.8 9.0 0.2 2 22 284 304 283 304 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF121-202 - 390 3.3e-14 52.7 41.7 7 9 1.2e-05 0.0072 16.6 0.1 2 24 312 334 311 334 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF121-202 - 390 3.3e-14 52.7 41.7 8 9 0.00037 0.22 11.9 0.1 2 22 340 360 339 360 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF121-202 - 390 3.3e-14 52.7 41.7 9 9 0.055 33 4.9 0.4 2 24 368 390 367 390 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_11 PF16622.5 29 ZNF121-202 - 390 2.1e-11 43.4 48.1 1 10 0.43 2.6e+02 1.5 0.2 9 17 120 128 119 130 0.81 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF121-202 - 390 2.1e-11 43.4 48.1 2 10 0.14 82 3.1 0.5 6 25 145 164 143 166 0.85 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF121-202 - 390 2.1e-11 43.4 48.1 3 10 5.5e-05 0.033 14.0 0.5 6 26 173 193 170 194 0.92 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF121-202 - 390 2.1e-11 43.4 48.1 4 10 5.6e-06 0.0033 17.1 0.1 5 26 200 221 197 222 0.95 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF121-202 - 390 2.1e-11 43.4 48.1 5 10 0.94 5.6e+02 0.4 0.1 6 14 229 237 227 244 0.88 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF121-202 - 390 2.1e-11 43.4 48.1 6 10 0.0074 4.4 7.2 1.6 6 26 257 277 253 278 0.92 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF121-202 - 390 2.1e-11 43.4 48.1 7 10 2.6e-05 0.016 15.0 0.2 5 26 284 305 283 306 0.93 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF121-202 - 390 2.1e-11 43.4 48.1 8 10 0.078 46 3.9 0.0 6 23 313 330 310 333 0.81 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF121-202 - 390 2.1e-11 43.4 48.1 9 10 0.011 6.4 6.6 1.3 7 26 342 361 340 362 0.95 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF121-202 - 390 2.1e-11 43.4 48.1 10 10 0.35 2.1e+02 1.8 0.1 7 24 370 387 368 389 0.84 zinc-finger C2H2-type Zn-ribbon_8 PF09723.10 40 ZNF121-202 - 390 7.2e-11 42.0 49.1 1 7 0.002 1.2 9.3 0.4 9 34 119 151 116 156 0.79 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF121-202 - 390 7.2e-11 42.0 49.1 2 7 0.00087 0.52 10.5 7.8 6 34 172 207 171 211 0.89 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF121-202 - 390 7.2e-11 42.0 49.1 3 7 5.5e-05 0.033 14.3 3.8 6 38 200 239 199 241 0.90 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF121-202 - 390 7.2e-11 42.0 49.1 4 7 0.0066 4 7.6 5.5 6 35 228 264 227 268 0.77 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF121-202 - 390 7.2e-11 42.0 49.1 5 7 2.6e-05 0.015 15.4 3.9 6 34 284 319 282 324 0.85 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF121-202 - 390 7.2e-11 42.0 49.1 6 7 0.0061 3.7 7.8 0.5 6 16 312 322 310 335 0.85 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF121-202 - 390 7.2e-11 42.0 49.1 7 7 8.4e-06 0.005 16.9 1.3 6 38 340 379 338 381 0.89 Zinc ribbon domain XPA_N PF01286.18 32 ZNF121-202 - 390 4.1e-09 36.3 43.8 1 11 7.4 4.4e+03 -2.2 0.1 6 13 92 99 91 103 0.83 XPA protein N-terminal XPA_N PF01286.18 32 ZNF121-202 - 390 4.1e-09 36.3 43.8 2 11 7.8 4.6e+03 -2.2 0.0 6 14 120 128 119 128 0.80 XPA protein N-terminal XPA_N PF01286.18 32 ZNF121-202 - 390 4.1e-09 36.3 43.8 3 11 0.0054 3.2 7.9 0.5 3 18 145 160 143 162 0.86 XPA protein N-terminal XPA_N PF01286.18 32 ZNF121-202 - 390 4.1e-09 36.3 43.8 4 11 0.017 9.9 6.3 0.7 3 14 173 184 171 189 0.89 XPA protein N-terminal XPA_N PF01286.18 32 ZNF121-202 - 390 4.1e-09 36.3 43.8 5 11 0.034 20 5.3 0.1 3 12 201 210 199 213 0.89 XPA protein N-terminal XPA_N PF01286.18 32 ZNF121-202 - 390 4.1e-09 36.3 43.8 6 11 0.029 17 5.5 0.2 3 18 229 244 227 249 0.84 XPA protein N-terminal XPA_N PF01286.18 32 ZNF121-202 - 390 4.1e-09 36.3 43.8 7 11 0.056 33 4.6 0.9 3 15 257 269 255 277 0.69 XPA protein N-terminal XPA_N PF01286.18 32 ZNF121-202 - 390 4.1e-09 36.3 43.8 8 11 0.0017 1 9.4 0.1 3 14 285 296 283 301 0.90 XPA protein N-terminal XPA_N PF01286.18 32 ZNF121-202 - 390 4.1e-09 36.3 43.8 9 11 0.0019 1.1 9.3 0.1 3 14 313 324 311 330 0.87 XPA protein N-terminal XPA_N PF01286.18 32 ZNF121-202 - 390 4.1e-09 36.3 43.8 10 11 0.0032 1.9 8.6 0.1 3 14 341 352 339 358 0.82 XPA protein N-terminal XPA_N PF01286.18 32 ZNF121-202 - 390 4.1e-09 36.3 43.8 11 11 0.04 24 5.1 0.1 3 18 369 384 367 387 0.86 XPA protein N-terminal zinc_ribbon_15 PF17032.5 86 ZNF121-202 - 390 1.1e-07 32.5 38.7 1 10 1.8 1.1e+03 0.5 0.1 36 73 86 123 57 132 0.67 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF121-202 - 390 1.1e-07 32.5 38.7 2 10 0.0066 4 8.3 0.7 34 74 112 152 106 161 0.87 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF121-202 - 390 1.1e-07 32.5 38.7 3 10 0.0037 2.2 9.1 4.2 31 74 137 180 126 186 0.83 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF121-202 - 390 1.1e-07 32.5 38.7 4 10 0.0011 0.64 10.8 1.7 31 75 165 209 155 215 0.88 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF121-202 - 390 1.1e-07 32.5 38.7 5 10 0.00034 0.2 12.4 0.5 26 75 188 237 182 246 0.89 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF121-202 - 390 1.1e-07 32.5 38.7 6 10 0.014 8.2 7.3 3.2 30 77 220 267 217 272 0.87 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF121-202 - 390 1.1e-07 32.5 38.7 7 10 0.00074 0.44 11.3 2.9 27 76 245 294 235 299 0.86 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF121-202 - 390 1.1e-07 32.5 38.7 8 10 0.00023 0.14 12.9 1.2 31 77 277 323 273 327 0.85 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF121-202 - 390 1.1e-07 32.5 38.7 9 10 8.3e-06 0.0049 17.6 1.0 30 78 304 352 299 355 0.90 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF121-202 - 390 1.1e-07 32.5 38.7 10 10 6.3e-05 0.038 14.8 1.3 26 75 328 377 325 381 0.88 zinc-ribbon family zf_UBZ PF18439.1 32 ZNF121-202 - 390 1e-06 28.2 42.0 1 10 2.1 1.2e+03 -0.9 0.0 1 13 37 49 37 51 0.77 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF121-202 - 390 1e-06 28.2 42.0 2 10 0.026 15 5.2 0.1 3 12 144 153 142 163 0.80 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF121-202 - 390 1e-06 28.2 42.0 3 10 0.0064 3.8 7.2 1.8 3 20 172 190 170 190 0.87 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF121-202 - 390 1e-06 28.2 42.0 4 10 0.056 33 4.2 0.1 3 12 200 209 198 213 0.86 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF121-202 - 390 1e-06 28.2 42.0 5 10 0.05 30 4.3 0.1 3 20 228 246 226 246 0.80 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF121-202 - 390 1e-06 28.2 42.0 6 10 0.43 2.6e+02 1.3 0.7 3 14 256 267 254 271 0.84 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF121-202 - 390 1e-06 28.2 42.0 7 10 0.0065 3.9 7.1 0.1 3 15 284 296 282 302 0.82 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF121-202 - 390 1e-06 28.2 42.0 8 10 0.00052 0.31 10.7 0.1 3 20 312 330 310 330 0.94 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF121-202 - 390 1e-06 28.2 42.0 9 10 0.003 1.8 8.3 0.3 3 17 340 355 338 358 0.78 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF121-202 - 390 1e-06 28.2 42.0 10 10 0.077 46 3.7 0.1 3 11 368 376 366 386 0.87 Ubiquitin-Binding Zinc Finger # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF121-202.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF121-202.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF121-202.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF121-202.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF121-202.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:59:42 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF121-203.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF121-203.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF121-203.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF121-203.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF121-203.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:59:42 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZNF12-201 - 659 1.8e-107 347.4 140.7 1 19 1.4 2e+03 -0.5 0.0 16 23 129 136 112 139 0.84 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF12-201 - 659 1.8e-107 347.4 140.7 2 19 0.079 1.2e+02 3.4 0.5 12 24 176 188 176 190 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF12-201 - 659 1.8e-107 347.4 140.7 3 19 2.9 4.4e+03 -1.6 0.1 8 16 196 204 195 204 0.86 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF12-201 - 659 1.8e-107 347.4 140.7 4 19 2.5e-07 0.00037 20.8 0.3 1 24 217 240 217 240 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF12-201 - 659 1.8e-107 347.4 140.7 5 19 4.2e-10 6.3e-07 29.5 0.7 5 24 249 268 247 268 0.98 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF12-201 - 659 1.8e-107 347.4 140.7 6 19 9.3e-11 1.4e-07 31.6 0.8 2 24 274 296 273 298 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF12-201 - 659 1.8e-107 347.4 140.7 7 19 9.6e-11 1.4e-07 31.6 1.7 1 24 301 324 301 324 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF12-201 - 659 1.8e-107 347.4 140.7 8 19 1.3e-09 2e-06 28.0 2.1 1 25 329 353 329 354 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF12-201 - 659 1.8e-107 347.4 140.7 9 19 6.3e-09 9.4e-06 25.8 1.1 1 24 357 380 357 380 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF12-201 - 659 1.8e-107 347.4 140.7 10 19 2.6e-11 3.9e-08 33.3 1.5 2 25 386 409 385 410 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF12-201 - 659 1.8e-107 347.4 140.7 11 19 1e-09 1.5e-06 28.3 1.8 2 24 414 436 413 437 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF12-201 - 659 1.8e-107 347.4 140.7 12 19 1.4e-12 2e-09 37.4 0.2 1 25 441 465 441 466 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF12-201 - 659 1.8e-107 347.4 140.7 13 19 1.2e-08 1.8e-05 25.0 2.1 2 24 470 492 469 494 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF12-201 - 659 1.8e-107 347.4 140.7 14 19 1.8e-09 2.7e-06 27.5 2.6 4 25 500 521 497 522 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF12-201 - 659 1.8e-107 347.4 140.7 15 19 3.3e-09 4.9e-06 26.7 1.7 2 24 526 548 525 548 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF12-201 - 659 1.8e-107 347.4 140.7 16 19 3.6e-11 5.4e-08 32.9 1.8 1 25 553 577 553 578 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF12-201 - 659 1.8e-107 347.4 140.7 17 19 3e-09 4.5e-06 26.8 1.0 2 25 582 605 581 606 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF12-201 - 659 1.8e-107 347.4 140.7 18 19 2.7e-09 4.1e-06 27.0 4.4 2 25 610 633 609 634 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF12-201 - 659 1.8e-107 347.4 140.7 19 19 1.1 1.7e+03 -0.3 0.2 1 10 637 646 637 649 0.85 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZNF12-201 - 659 2.9e-82 266.8 165.0 1 18 0.29 4.4e+02 1.7 0.2 2 9 129 136 128 137 0.88 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF12-201 - 659 2.9e-82 266.8 165.0 2 18 3.5 5.2e+03 -1.7 0.0 5 20 183 198 183 199 0.75 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF12-201 - 659 2.9e-82 266.8 165.0 3 18 0.7 1.1e+03 0.5 0.1 14 23 216 225 212 225 0.89 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF12-201 - 659 2.9e-82 266.8 165.0 4 18 1e-07 0.00015 22.0 3.8 1 23 231 253 231 253 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF12-201 - 659 2.9e-82 266.8 165.0 5 18 4.9e-09 7.3e-06 26.2 2.7 1 23 259 281 259 281 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF12-201 - 659 2.9e-82 266.8 165.0 6 18 1e-07 0.00016 22.0 2.3 1 23 287 309 287 309 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF12-201 - 659 2.9e-82 266.8 165.0 7 18 1.4e-08 2e-05 24.8 7.2 1 23 315 337 315 337 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF12-201 - 659 2.9e-82 266.8 165.0 8 18 5.2e-10 7.8e-07 29.2 1.3 1 23 343 365 343 365 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF12-201 - 659 2.9e-82 266.8 165.0 9 18 2.7e-08 4e-05 23.8 7.9 1 23 371 393 371 393 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF12-201 - 659 2.9e-82 266.8 165.0 10 18 4.5e-09 6.8e-06 26.3 1.8 1 23 399 421 399 421 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF12-201 - 659 2.9e-82 266.8 165.0 11 18 1.6e-08 2.4e-05 24.5 0.6 1 23 427 449 427 449 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF12-201 - 659 2.9e-82 266.8 165.0 12 18 1.6e-07 0.00024 21.4 2.0 1 23 455 477 455 477 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF12-201 - 659 2.9e-82 266.8 165.0 13 18 2.2e-08 3.3e-05 24.1 2.7 1 23 483 505 483 505 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF12-201 - 659 2.9e-82 266.8 165.0 14 18 1.1e-06 0.0016 18.8 2.5 1 23 511 533 511 533 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF12-201 - 659 2.9e-82 266.8 165.0 15 18 1.6e-09 2.4e-06 27.7 2.6 1 23 539 561 539 561 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF12-201 - 659 2.9e-82 266.8 165.0 16 18 1.3e-06 0.002 18.5 4.6 1 23 567 589 567 589 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF12-201 - 659 2.9e-82 266.8 165.0 17 18 4.7e-09 7e-06 26.2 1.1 1 23 595 617 595 617 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF12-201 - 659 2.9e-82 266.8 165.0 18 18 9.6e-08 0.00014 22.1 3.2 1 23 623 645 623 645 0.98 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZNF12-201 - 659 1.3e-39 131.4 152.9 1 17 2.8 4.3e+03 -0.9 0.1 2 9 129 136 129 141 0.85 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF12-201 - 659 1.3e-39 131.4 152.9 2 17 0.67 1e+03 1.1 0.0 6 21 184 199 182 201 0.81 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF12-201 - 659 1.3e-39 131.4 152.9 3 17 3.3e-05 0.049 14.5 3.4 1 23 231 253 231 254 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF12-201 - 659 1.3e-39 131.4 152.9 4 17 2.4e-06 0.0035 18.0 2.2 1 23 259 281 259 282 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF12-201 - 659 1.3e-39 131.4 152.9 5 17 3.9e-05 0.058 14.3 1.7 1 23 287 309 287 310 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF12-201 - 659 1.3e-39 131.4 152.9 6 17 2.8e-06 0.0041 17.8 6.0 1 23 315 337 315 338 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF12-201 - 659 1.3e-39 131.4 152.9 7 17 1.4e-06 0.0021 18.7 1.0 1 23 343 365 343 366 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF12-201 - 659 1.3e-39 131.4 152.9 8 17 9.6e-06 0.014 16.1 6.6 1 23 371 393 371 394 0.97 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF12-201 - 659 1.3e-39 131.4 152.9 9 17 4.9e-05 0.073 13.9 1.4 1 23 399 421 399 422 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF12-201 - 659 1.3e-39 131.4 152.9 10 17 4.2e-05 0.062 14.2 0.4 1 23 427 449 427 450 0.91 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF12-201 - 659 1.3e-39 131.4 152.9 11 17 0.00022 0.33 11.9 1.6 1 23 455 477 455 478 0.91 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF12-201 - 659 1.3e-39 131.4 152.9 12 17 1.8e-05 0.027 15.3 2.5 1 23 483 505 483 506 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF12-201 - 659 1.3e-39 131.4 152.9 13 17 0.00086 1.3 10.1 1.8 1 23 511 533 511 534 0.85 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF12-201 - 659 1.3e-39 131.4 152.9 14 17 5.1e-07 0.00077 20.1 2.1 1 23 539 561 539 562 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF12-201 - 659 1.3e-39 131.4 152.9 15 17 0.0027 4.1 8.5 3.9 1 23 567 589 567 590 0.86 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF12-201 - 659 1.3e-39 131.4 152.9 16 17 1.2e-05 0.017 15.9 0.9 1 23 595 617 595 618 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF12-201 - 659 1.3e-39 131.4 152.9 17 17 0.00057 0.85 10.6 2.6 1 23 623 645 623 646 0.93 C2H2-type zinc finger KRAB PF01352.27 42 ZNF12-201 - 659 2.7e-25 87.7 0.3 1 1 3.8e-28 5.7e-25 86.7 0.3 1 42 7 48 7 48 0.99 KRAB box zf-C2H2_6 PF13912.6 27 ZNF12-201 - 659 8.8e-09 35.1 153.9 1 17 0.68 1e+03 -0.1 0.3 3 10 129 136 129 137 0.89 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF12-201 - 659 8.8e-09 35.1 153.9 2 17 6.1 9.1e+03 -3.2 0.1 6 12 183 189 183 190 0.85 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF12-201 - 659 8.8e-09 35.1 153.9 3 17 0.0032 4.7 7.3 4.5 2 11 231 240 231 242 0.96 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF12-201 - 659 8.8e-09 35.1 153.9 4 17 0.0061 9.1 6.4 3.7 2 11 259 268 259 269 0.97 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF12-201 - 659 8.8e-09 35.1 153.9 5 17 0.03 45 4.2 3.9 2 11 287 296 287 312 0.81 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF12-201 - 659 8.8e-09 35.1 153.9 6 17 0.0031 4.6 7.3 7.0 2 25 315 338 315 340 0.87 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF12-201 - 659 8.8e-09 35.1 153.9 7 17 0.002 3.1 7.9 1.4 2 24 343 365 343 367 0.90 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF12-201 - 659 8.8e-09 35.1 153.9 8 17 0.0047 7.1 6.8 6.1 2 24 371 393 370 396 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF12-201 - 659 8.8e-09 35.1 153.9 9 17 0.0003 0.44 10.6 1.6 2 25 399 422 399 424 0.91 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF12-201 - 659 8.8e-09 35.1 153.9 10 17 0.00023 0.34 11.0 0.3 2 12 427 437 427 451 0.77 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF12-201 - 659 8.8e-09 35.1 153.9 11 17 0.0001 0.16 12.0 1.6 2 24 455 477 455 480 0.91 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF12-201 - 659 8.8e-09 35.1 153.9 12 17 0.00027 0.4 10.7 2.7 2 25 483 506 483 508 0.82 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF12-201 - 659 8.8e-09 35.1 153.9 13 17 0.1 1.5e+02 2.5 0.5 2 12 511 521 511 523 0.90 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF12-201 - 659 8.8e-09 35.1 153.9 14 17 4e-05 0.059 13.4 2.9 2 24 539 561 539 564 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF12-201 - 659 8.8e-09 35.1 153.9 15 17 0.054 80 3.4 1.7 1 12 566 577 566 579 0.89 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF12-201 - 659 8.8e-09 35.1 153.9 16 17 0.00018 0.27 11.3 0.8 2 24 595 617 595 620 0.84 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF12-201 - 659 8.8e-09 35.1 153.9 17 17 0.0041 6.1 7.0 1.8 2 11 623 632 623 647 0.83 C2H2-type zinc finger # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF12-201.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF12-201.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF12-201.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF12-201.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF12-201.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:59:43 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF12-202.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF12-202.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF12-202.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF12-202.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF12-202.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:59:43 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZNF12-203 - 623 5.7e-108 349.0 140.7 1 19 1.4 1.9e+03 -0.4 0.0 16 23 93 100 76 103 0.84 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF12-203 - 623 5.7e-108 349.0 140.7 2 19 0.08 1.1e+02 3.5 0.5 12 24 140 152 140 154 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF12-203 - 623 5.7e-108 349.0 140.7 3 19 3 4.1e+03 -1.5 0.1 8 16 160 168 159 168 0.86 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF12-203 - 623 5.7e-108 349.0 140.7 4 19 2.5e-07 0.00034 20.9 0.3 1 24 181 204 181 204 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF12-203 - 623 5.7e-108 349.0 140.7 5 19 4.3e-10 5.9e-07 29.6 0.7 5 24 213 232 211 232 0.98 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF12-203 - 623 5.7e-108 349.0 140.7 6 19 9.4e-11 1.3e-07 31.7 0.8 2 24 238 260 237 262 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF12-203 - 623 5.7e-108 349.0 140.7 7 19 9.8e-11 1.3e-07 31.7 1.7 1 24 265 288 265 288 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF12-203 - 623 5.7e-108 349.0 140.7 8 19 1.4e-09 1.9e-06 28.0 2.1 1 25 293 317 293 318 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF12-203 - 623 5.7e-108 349.0 140.7 9 19 6.4e-09 8.8e-06 25.9 1.1 1 24 321 344 321 344 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF12-203 - 623 5.7e-108 349.0 140.7 10 19 2.7e-11 3.7e-08 33.4 1.5 2 25 350 373 349 374 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF12-203 - 623 5.7e-108 349.0 140.7 11 19 1.1e-09 1.5e-06 28.4 1.8 2 24 378 400 377 401 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF12-203 - 623 5.7e-108 349.0 140.7 12 19 1.4e-12 1.9e-09 37.5 0.2 1 25 405 429 405 430 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF12-203 - 623 5.7e-108 349.0 140.7 13 19 1.2e-08 1.7e-05 25.0 2.1 2 24 434 456 433 458 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF12-203 - 623 5.7e-108 349.0 140.7 14 19 1.8e-09 2.5e-06 27.6 2.6 4 25 464 485 461 486 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF12-203 - 623 5.7e-108 349.0 140.7 15 19 3.3e-09 4.6e-06 26.8 1.7 2 24 490 512 489 512 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF12-203 - 623 5.7e-108 349.0 140.7 16 19 3.7e-11 5.1e-08 33.0 1.8 1 25 517 541 517 542 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF12-203 - 623 5.7e-108 349.0 140.7 17 19 3.1e-09 4.2e-06 26.9 1.0 2 25 546 569 545 570 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF12-203 - 623 5.7e-108 349.0 140.7 18 19 2.8e-09 3.8e-06 27.1 4.4 2 25 574 597 573 598 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF12-203 - 623 5.7e-108 349.0 140.7 19 19 1.1 1.6e+03 -0.2 0.2 1 10 601 610 601 613 0.85 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZNF12-203 - 623 9.7e-83 268.3 165.0 1 18 0.3 4.1e+02 1.7 0.2 2 9 93 100 92 101 0.88 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF12-203 - 623 9.7e-83 268.3 165.0 2 18 3.5 4.9e+03 -1.6 0.0 5 20 147 162 147 163 0.75 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF12-203 - 623 9.7e-83 268.3 165.0 3 18 0.72 9.9e+02 0.5 0.1 14 23 180 189 176 189 0.89 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF12-203 - 623 9.7e-83 268.3 165.0 4 18 1e-07 0.00014 22.1 3.8 1 23 195 217 195 217 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF12-203 - 623 9.7e-83 268.3 165.0 5 18 4.9e-09 6.8e-06 26.3 2.7 1 23 223 245 223 245 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF12-203 - 623 9.7e-83 268.3 165.0 6 18 1.1e-07 0.00015 22.1 2.3 1 23 251 273 251 273 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF12-203 - 623 9.7e-83 268.3 165.0 7 18 1.4e-08 1.9e-05 24.8 7.2 1 23 279 301 279 301 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF12-203 - 623 9.7e-83 268.3 165.0 8 18 5.3e-10 7.3e-07 29.3 1.3 1 23 307 329 307 329 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF12-203 - 623 9.7e-83 268.3 165.0 9 18 2.7e-08 3.7e-05 23.9 7.9 1 23 335 357 335 357 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF12-203 - 623 9.7e-83 268.3 165.0 10 18 4.6e-09 6.3e-06 26.4 1.8 1 23 363 385 363 385 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF12-203 - 623 9.7e-83 268.3 165.0 11 18 1.6e-08 2.3e-05 24.6 0.6 1 23 391 413 391 413 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF12-203 - 623 9.7e-83 268.3 165.0 12 18 1.6e-07 0.00022 21.5 2.0 1 23 419 441 419 441 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF12-203 - 623 9.7e-83 268.3 165.0 13 18 2.3e-08 3.1e-05 24.2 2.7 1 23 447 469 447 469 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF12-203 - 623 9.7e-83 268.3 165.0 14 18 1.1e-06 0.0015 18.9 2.5 1 23 475 497 475 497 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF12-203 - 623 9.7e-83 268.3 165.0 15 18 1.6e-09 2.2e-06 27.8 2.6 1 23 503 525 503 525 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF12-203 - 623 9.7e-83 268.3 165.0 16 18 1.3e-06 0.0019 18.6 4.6 1 23 531 553 531 553 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF12-203 - 623 9.7e-83 268.3 165.0 17 18 4.8e-09 6.6e-06 26.3 1.1 1 23 559 581 559 581 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF12-203 - 623 9.7e-83 268.3 165.0 18 18 9.8e-08 0.00013 22.2 3.2 1 23 587 609 587 609 0.98 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZNF12-203 - 623 4.3e-40 132.9 152.9 1 17 2.9 4e+03 -0.8 0.1 2 9 93 100 93 105 0.85 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF12-203 - 623 4.3e-40 132.9 152.9 2 17 0.68 9.4e+02 1.2 0.0 6 21 148 163 146 165 0.81 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF12-203 - 623 4.3e-40 132.9 152.9 3 17 3.3e-05 0.046 14.6 3.4 1 23 195 217 195 218 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF12-203 - 623 4.3e-40 132.9 152.9 4 17 2.4e-06 0.0033 18.1 2.2 1 23 223 245 223 246 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF12-203 - 623 4.3e-40 132.9 152.9 5 17 3.9e-05 0.054 14.3 1.7 1 23 251 273 251 274 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF12-203 - 623 4.3e-40 132.9 152.9 6 17 2.8e-06 0.0039 17.9 6.0 1 23 279 301 279 302 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF12-203 - 623 4.3e-40 132.9 152.9 7 17 1.4e-06 0.002 18.8 1.0 1 23 307 329 307 330 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF12-203 - 623 4.3e-40 132.9 152.9 8 17 9.8e-06 0.013 16.2 6.6 1 23 335 357 335 358 0.97 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF12-203 - 623 4.3e-40 132.9 152.9 9 17 5e-05 0.069 14.0 1.4 1 23 363 385 363 386 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF12-203 - 623 4.3e-40 132.9 152.9 10 17 4.2e-05 0.058 14.2 0.4 1 23 391 413 391 414 0.91 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF12-203 - 623 4.3e-40 132.9 152.9 11 17 0.00023 0.31 12.0 1.6 1 23 419 441 419 442 0.91 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF12-203 - 623 4.3e-40 132.9 152.9 12 17 1.8e-05 0.025 15.4 2.5 1 23 447 469 447 470 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF12-203 - 623 4.3e-40 132.9 152.9 13 17 0.00087 1.2 10.2 1.8 1 23 475 497 475 498 0.85 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF12-203 - 623 4.3e-40 132.9 152.9 14 17 5.2e-07 0.00072 20.2 2.1 1 23 503 525 503 526 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF12-203 - 623 4.3e-40 132.9 152.9 15 17 0.0028 3.8 8.6 3.9 1 23 531 553 531 554 0.86 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF12-203 - 623 4.3e-40 132.9 152.9 16 17 1.2e-05 0.016 16.0 0.9 1 23 559 581 559 582 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF12-203 - 623 4.3e-40 132.9 152.9 17 17 0.00058 0.79 10.7 2.6 1 23 587 609 587 610 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF12-203 - 623 2.9e-09 36.7 153.8 1 17 0.7 9.6e+02 -0.0 0.3 3 10 93 100 93 101 0.89 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF12-203 - 623 2.9e-09 36.7 153.8 2 17 6.2 8.6e+03 -3.1 0.1 6 12 147 153 147 154 0.85 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF12-203 - 623 2.9e-09 36.7 153.8 3 17 0.0032 4.5 7.4 4.5 2 11 195 204 195 206 0.96 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF12-203 - 623 2.9e-09 36.7 153.8 4 17 0.0062 8.6 6.5 3.7 2 11 223 232 223 233 0.97 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF12-203 - 623 2.9e-09 36.7 153.8 5 17 0.029 40 4.4 3.8 2 11 251 260 251 276 0.81 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF12-203 - 623 2.9e-09 36.7 153.8 6 17 0.0031 4.3 7.4 7.0 2 25 279 302 279 304 0.87 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF12-203 - 623 2.9e-09 36.7 153.8 7 17 0.0021 2.9 8.0 1.4 2 24 307 329 307 331 0.90 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF12-203 - 623 2.9e-09 36.7 153.8 8 17 0.0048 6.6 6.8 6.1 2 24 335 357 334 360 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF12-203 - 623 2.9e-09 36.7 153.8 9 17 0.0003 0.41 10.7 1.6 2 25 363 386 363 388 0.91 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF12-203 - 623 2.9e-09 36.7 153.8 10 17 0.00023 0.32 11.1 0.3 2 12 391 401 391 415 0.77 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF12-203 - 623 2.9e-09 36.7 153.8 11 17 0.00011 0.15 12.1 1.6 2 25 419 442 419 444 0.91 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF12-203 - 623 2.9e-09 36.7 153.8 12 17 0.00027 0.37 10.8 2.7 2 25 447 470 447 472 0.82 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF12-203 - 623 2.9e-09 36.7 153.8 13 17 0.1 1.4e+02 2.6 0.5 2 12 475 485 475 487 0.90 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF12-203 - 623 2.9e-09 36.7 153.8 14 17 4e-05 0.056 13.5 2.9 2 24 503 525 503 528 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF12-203 - 623 2.9e-09 36.7 153.8 15 17 0.055 75 3.5 1.7 1 12 530 541 530 543 0.89 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF12-203 - 623 2.9e-09 36.7 153.8 16 17 0.00018 0.25 11.4 0.8 2 24 559 581 559 584 0.84 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF12-203 - 623 2.9e-09 36.7 153.8 17 17 0.0042 5.8 7.0 1.8 2 11 587 596 587 611 0.83 C2H2-type zinc finger # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF12-203.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF12-203.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF12-203.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF12-203.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF12-203.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:59:44 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZNF12-204 - 697 2.7e-104 337.4 150.0 1 20 9.4 1.7e+04 -3.4 1.4 17 22 140 145 138 149 0.76 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF12-204 - 697 2.7e-104 337.4 150.0 2 20 1.4 2.6e+03 -0.8 0.0 16 23 167 174 156 177 0.89 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF12-204 - 697 2.7e-104 337.4 150.0 3 20 0.07 1.2e+02 3.3 0.5 12 24 214 226 214 228 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF12-204 - 697 2.7e-104 337.4 150.0 4 20 2.6 4.7e+03 -1.7 0.1 8 16 234 242 233 242 0.86 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF12-204 - 697 2.7e-104 337.4 150.0 5 20 2.2e-07 0.00039 20.7 0.3 1 24 255 278 255 278 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF12-204 - 697 2.7e-104 337.4 150.0 6 20 3.8e-10 6.8e-07 29.4 0.7 5 24 287 306 285 306 0.98 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF12-204 - 697 2.7e-104 337.4 150.0 7 20 8.3e-11 1.5e-07 31.5 0.8 2 24 312 334 311 336 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF12-204 - 697 2.7e-104 337.4 150.0 8 20 8.6e-11 1.5e-07 31.5 1.7 1 24 339 362 339 362 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF12-204 - 697 2.7e-104 337.4 150.0 9 20 1.2e-09 2.1e-06 27.9 2.1 1 25 367 391 367 392 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF12-204 - 697 2.7e-104 337.4 150.0 10 20 5.6e-09 1e-05 25.7 1.1 1 24 395 418 395 418 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF12-204 - 697 2.7e-104 337.4 150.0 11 20 2.3e-11 4.2e-08 33.3 1.5 2 25 424 447 423 448 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF12-204 - 697 2.7e-104 337.4 150.0 12 20 9.2e-10 1.7e-06 28.2 1.8 2 24 452 474 451 475 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF12-204 - 697 2.7e-104 337.4 150.0 13 20 1.2e-12 2.2e-09 37.3 0.2 1 25 479 503 479 504 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF12-204 - 697 2.7e-104 337.4 150.0 14 20 1.1e-08 1.9e-05 24.9 2.1 2 24 508 530 507 532 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF12-204 - 697 2.7e-104 337.4 150.0 15 20 1.6e-09 2.9e-06 27.5 2.6 4 25 538 559 535 560 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF12-204 - 697 2.7e-104 337.4 150.0 16 20 2.9e-09 5.2e-06 26.6 1.7 2 24 564 586 563 586 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF12-204 - 697 2.7e-104 337.4 150.0 17 20 3.2e-11 5.8e-08 32.8 1.8 1 25 591 615 591 616 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF12-204 - 697 2.7e-104 337.4 150.0 18 20 2.7e-09 4.8e-06 26.8 1.0 2 25 620 643 619 644 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF12-204 - 697 2.7e-104 337.4 150.0 19 20 2.4e-09 4.3e-06 26.9 4.4 2 25 648 671 647 672 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF12-204 - 697 2.7e-104 337.4 150.0 20 20 1 1.8e+03 -0.3 0.2 1 10 675 684 675 687 0.85 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZNF12-204 - 697 6.5e-80 259.4 172.4 1 19 2.6 4.6e+03 -1.6 0.7 3 16 140 153 140 155 0.75 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF12-204 - 697 6.5e-80 259.4 172.4 2 19 0.26 4.7e+02 1.6 0.2 2 9 167 174 166 175 0.88 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF12-204 - 697 6.5e-80 259.4 172.4 3 19 3.1 5.5e+03 -1.8 0.0 5 20 221 236 221 237 0.75 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF12-204 - 697 6.5e-80 259.4 172.4 4 19 0.62 1.1e+03 0.4 0.1 14 23 254 263 250 263 0.89 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF12-204 - 697 6.5e-80 259.4 172.4 5 19 9.1e-08 0.00016 21.9 3.8 1 23 269 291 269 291 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF12-204 - 697 6.5e-80 259.4 172.4 6 19 4.3e-09 7.7e-06 26.1 2.7 1 23 297 319 297 319 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF12-204 - 697 6.5e-80 259.4 172.4 7 19 9.3e-08 0.00017 21.9 2.3 1 23 325 347 325 347 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF12-204 - 697 6.5e-80 259.4 172.4 8 19 1.2e-08 2.2e-05 24.7 7.2 1 23 353 375 353 375 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF12-204 - 697 6.5e-80 259.4 172.4 9 19 4.6e-10 8.3e-07 29.1 1.3 1 23 381 403 381 403 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF12-204 - 697 6.5e-80 259.4 172.4 10 19 2.4e-08 4.3e-05 23.7 7.9 1 23 409 431 409 431 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF12-204 - 697 6.5e-80 259.4 172.4 11 19 4e-09 7.2e-06 26.2 1.8 1 23 437 459 437 459 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF12-204 - 697 6.5e-80 259.4 172.4 12 19 1.4e-08 2.6e-05 24.4 0.6 1 23 465 487 465 487 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF12-204 - 697 6.5e-80 259.4 172.4 13 19 1.4e-07 0.00025 21.3 2.0 1 23 493 515 493 515 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF12-204 - 697 6.5e-80 259.4 172.4 14 19 2e-08 3.6e-05 24.0 2.7 1 23 521 543 521 543 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF12-204 - 697 6.5e-80 259.4 172.4 15 19 9.4e-07 0.0017 18.7 2.5 1 23 549 571 549 571 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF12-204 - 697 6.5e-80 259.4 172.4 16 19 1.4e-09 2.6e-06 27.6 2.6 1 23 577 599 577 599 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF12-204 - 697 6.5e-80 259.4 172.4 17 19 1.2e-06 0.0021 18.4 4.6 1 23 605 627 605 627 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF12-204 - 697 6.5e-80 259.4 172.4 18 19 4.2e-09 7.5e-06 26.1 1.1 1 23 633 655 633 655 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF12-204 - 697 6.5e-80 259.4 172.4 19 19 8.5e-08 0.00015 22.0 3.2 1 23 661 683 661 683 0.98 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZNF12-204 - 697 2.1e-37 124.5 160.4 1 19 2 3.6e+03 -0.7 0.8 3 15 140 152 139 155 0.79 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF12-204 - 697 2.1e-37 124.5 160.4 2 19 2.5 4.5e+03 -1.0 0.1 2 9 167 174 167 179 0.85 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF12-204 - 697 2.1e-37 124.5 160.4 3 19 0.6 1.1e+03 1.0 0.0 6 21 222 237 220 239 0.81 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF12-204 - 697 2.1e-37 124.5 160.4 4 19 9.4 1.7e+04 -2.7 0.1 10 23 250 263 249 264 0.78 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF12-204 - 697 2.1e-37 124.5 160.4 5 19 2.9e-05 0.052 14.4 3.4 1 23 269 291 269 292 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF12-204 - 697 2.1e-37 124.5 160.4 6 19 2.1e-06 0.0038 17.9 2.2 1 23 297 319 297 320 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF12-204 - 697 2.1e-37 124.5 160.4 7 19 3.5e-05 0.062 14.2 1.7 1 23 325 347 325 348 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF12-204 - 697 2.1e-37 124.5 160.4 8 19 2.5e-06 0.0044 17.7 6.0 1 23 353 375 353 376 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF12-204 - 697 2.1e-37 124.5 160.4 9 19 1.3e-06 0.0023 18.6 1.0 1 23 381 403 381 404 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF12-204 - 697 2.1e-37 124.5 160.4 10 19 8.6e-06 0.015 16.0 6.6 1 23 409 431 409 432 0.97 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF12-204 - 697 2.1e-37 124.5 160.4 11 19 4.4e-05 0.078 13.9 1.4 1 23 437 459 437 460 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF12-204 - 697 2.1e-37 124.5 160.4 12 19 3.7e-05 0.067 14.1 0.4 1 23 465 487 465 488 0.91 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF12-204 - 697 2.1e-37 124.5 160.4 13 19 0.0002 0.36 11.8 1.6 1 23 493 515 493 516 0.91 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF12-204 - 697 2.1e-37 124.5 160.4 14 19 1.6e-05 0.029 15.2 2.5 1 23 521 543 521 544 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF12-204 - 697 2.1e-37 124.5 160.4 15 19 0.00076 1.4 10.0 1.8 1 23 549 571 549 572 0.85 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF12-204 - 697 2.1e-37 124.5 160.4 16 19 4.6e-07 0.00082 20.0 2.1 1 23 577 599 577 600 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF12-204 - 697 2.1e-37 124.5 160.4 17 19 0.0024 4.4 8.4 3.9 1 23 605 627 605 628 0.86 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF12-204 - 697 2.1e-37 124.5 160.4 18 19 1e-05 0.019 15.8 0.9 1 23 633 655 633 656 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF12-204 - 697 2.1e-37 124.5 160.4 19 19 0.0005 0.91 10.5 2.6 1 23 661 683 661 684 0.93 C2H2-type zinc finger KRAB PF01352.27 42 ZNF12-204 - 697 2.9e-25 87.6 0.3 1 1 3.4e-28 6.1e-25 86.6 0.3 1 42 7 48 7 48 0.99 KRAB box # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF12-204.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF12-204.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF12-204.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF12-204.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF12-204.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:59:44 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF12-205.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF12-205.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF12-205.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF12-205.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF12-205.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:59:45 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZNF124-201 - 289 7.6e-62 203.2 62.5 1 8 2.9e-10 1.9e-07 31.2 0.2 3 23 76 96 74 98 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF124-201 - 289 7.6e-62 203.2 62.5 2 8 1.2e-12 7.7e-10 38.7 1.2 1 25 102 126 102 127 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF124-201 - 289 7.6e-62 203.2 62.5 3 8 4e-11 2.6e-08 33.9 5.1 1 25 130 154 130 155 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF124-201 - 289 7.6e-62 203.2 62.5 4 8 3.6e-10 2.4e-07 30.9 4.0 4 25 161 182 159 183 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF124-201 - 289 7.6e-62 203.2 62.5 5 8 4.6e-07 0.00031 21.0 0.2 2 25 187 210 186 211 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF124-201 - 289 7.6e-62 203.2 62.5 6 8 1.7e-07 0.00012 22.4 1.7 1 25 214 238 214 239 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF124-201 - 289 7.6e-62 203.2 62.5 7 8 1.4e-12 9.3e-10 38.5 0.9 1 25 242 266 242 267 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF124-201 - 289 7.6e-62 203.2 62.5 8 8 1.1e-07 7.3e-05 23.0 2.1 2 18 271 287 270 288 0.94 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZNF124-201 - 289 2e-32 109.8 65.1 1 8 0.24 1.6e+02 3.0 0.6 11 23 70 82 67 82 0.88 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF124-201 - 289 2e-32 109.8 65.1 2 8 3.3e-05 0.022 15.2 0.4 1 23 88 110 88 110 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF124-201 - 289 2e-32 109.8 65.1 3 8 3e-09 2e-06 27.9 2.7 1 23 116 138 116 138 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF124-201 - 289 2e-32 109.8 65.1 4 8 8.3e-05 0.055 13.9 8.4 1 23 144 166 144 166 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF124-201 - 289 2e-32 109.8 65.1 5 8 1.8e-05 0.012 16.1 0.5 1 23 172 194 172 194 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF124-201 - 289 2e-32 109.8 65.1 6 8 1.5e-08 9.9e-06 25.7 1.0 1 23 200 222 200 222 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF124-201 - 289 2e-32 109.8 65.1 7 8 3.7e-06 0.0025 18.2 2.6 1 23 228 250 228 250 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF124-201 - 289 2e-32 109.8 65.1 8 8 7.7e-09 5.1e-06 26.6 1.0 1 23 256 278 256 278 0.99 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZNF124-201 - 289 4.5e-26 89.3 59.2 1 8 5.3 3.5e+03 -0.6 0.2 12 23 71 82 66 83 0.78 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF124-201 - 289 4.5e-26 89.3 59.2 2 8 0.0022 1.5 9.9 0.3 1 23 88 110 88 111 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF124-201 - 289 4.5e-26 89.3 59.2 3 8 2.5e-07 0.00017 22.2 2.1 1 23 116 138 116 139 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF124-201 - 289 4.5e-26 89.3 59.2 4 8 0.00012 0.081 13.8 6.8 1 23 144 166 144 167 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF124-201 - 289 4.5e-26 89.3 59.2 5 8 1.1e-06 0.00074 20.1 0.5 1 23 172 194 172 195 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF124-201 - 289 4.5e-26 89.3 59.2 6 8 5.6e-07 0.00037 21.1 0.6 1 23 200 222 200 223 0.97 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF124-201 - 289 4.5e-26 89.3 59.2 7 8 2.5e-06 0.0016 19.1 1.8 1 23 228 250 228 251 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF124-201 - 289 4.5e-26 89.3 59.2 8 8 5.7e-06 0.0038 17.9 1.3 1 23 256 278 256 279 0.96 C2H2-type zinc finger KRAB PF01352.27 42 ZNF124-201 - 289 8.4e-26 89.3 0.1 1 1 2e-28 1.3e-25 88.7 0.1 1 42 12 53 12 53 0.98 KRAB box zf-C2H2_6 PF13912.6 27 ZNF124-201 - 289 1.3e-13 50.6 58.8 1 7 0.0049 3.3 7.8 0.4 2 24 88 110 88 113 0.91 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF124-201 - 289 1.3e-13 50.6 58.8 2 7 2.6e-05 0.017 15.1 2.4 1 24 115 138 115 141 0.92 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF124-201 - 289 1.3e-13 50.6 58.8 3 7 0.069 46 4.2 6.4 2 24 144 166 144 169 0.81 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF124-201 - 289 1.3e-13 50.6 58.8 4 7 7e-05 0.047 13.7 1.2 2 24 172 194 172 197 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF124-201 - 289 1.3e-13 50.6 58.8 5 7 2.1e-06 0.0014 18.6 1.2 2 24 200 222 200 225 0.95 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF124-201 - 289 1.3e-13 50.6 58.8 6 7 0.0052 3.4 7.8 1.8 2 24 228 250 228 253 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF124-201 - 289 1.3e-13 50.6 58.8 7 7 1e-05 0.0066 16.4 2.3 2 24 256 278 256 281 0.96 C2H2-type zinc finger # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF124-201.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF124-201.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF124-201.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF124-201.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF124-201.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:59:45 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF124-202.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF124-202.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF124-202.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF124-202.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF124-202.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:59:45 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF124-203.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF124-203.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF124-203.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF124-203.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF124-203.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:59:46 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- KRAB PF01352.27 42 ZNF124-204 - 77 7.4e-27 92.7 0.1 1 1 5.6e-31 1e-26 92.3 0.1 1 42 12 53 12 53 0.98 KRAB box # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF124-204.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF124-204.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF124-204.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF124-204.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF124-204.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:59:46 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF124-205.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF124-205.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF124-205.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF124-205.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF124-205.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:59:46 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZNF124-206 - 351 1.2e-63 208.9 83.9 1 10 0.00097 1.2 9.6 7.7 4 23 73 92 72 105 0.88 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF124-206 - 351 1.2e-63 208.9 83.9 2 10 0.013 17 6.1 0.3 8 25 115 132 108 132 0.86 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF124-206 - 351 1.2e-63 208.9 83.9 3 10 1.9e-10 2.4e-07 30.8 0.2 3 23 138 158 136 160 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF124-206 - 351 1.2e-63 208.9 83.9 4 10 7.8e-13 9.9e-10 38.4 1.2 1 25 164 188 164 189 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF124-206 - 351 1.2e-63 208.9 83.9 5 10 2.6e-11 3.4e-08 33.6 5.1 1 25 192 216 192 217 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF124-206 - 351 1.2e-63 208.9 83.9 6 10 2.4e-10 3.1e-07 30.5 4.0 4 25 223 244 221 245 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF124-206 - 351 1.2e-63 208.9 83.9 7 10 3.1e-07 0.0004 20.7 0.2 2 25 249 272 248 273 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF124-206 - 351 1.2e-63 208.9 83.9 8 10 1.2e-07 0.00015 22.0 1.7 1 25 276 300 276 301 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF124-206 - 351 1.2e-63 208.9 83.9 9 10 9.3e-13 1.2e-09 38.1 0.9 1 25 304 328 304 329 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF124-206 - 351 1.2e-63 208.9 83.9 10 10 7.2e-08 9.3e-05 22.7 2.1 2 18 333 349 332 350 0.94 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZNF124-206 - 351 7e-31 105.0 88.8 1 11 2.3 3e+03 -1.0 0.4 10 23 65 78 64 78 0.81 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF124-206 - 351 7e-31 105.0 88.8 2 11 1.6 2e+03 -0.4 1.0 3 8 86 91 84 92 0.87 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF124-206 - 351 7e-31 105.0 88.8 3 11 4.2 5.4e+03 -1.8 3.3 2 9 95 102 94 103 0.85 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF124-206 - 351 7e-31 105.0 88.8 4 11 3.2e-06 0.0041 17.5 0.2 3 23 124 144 122 144 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF124-206 - 351 7e-31 105.0 88.8 5 11 2.2e-05 0.028 14.9 0.4 1 23 150 172 150 172 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF124-206 - 351 7e-31 105.0 88.8 6 11 2e-09 2.6e-06 27.6 2.7 1 23 178 200 178 200 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF124-206 - 351 7e-31 105.0 88.8 7 11 5.5e-05 0.071 13.6 8.4 1 23 206 228 206 228 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF124-206 - 351 7e-31 105.0 88.8 8 11 1.2e-05 0.015 15.7 0.5 1 23 234 256 234 256 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF124-206 - 351 7e-31 105.0 88.8 9 11 9.9e-09 1.3e-05 25.4 1.0 1 23 262 284 262 284 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF124-206 - 351 7e-31 105.0 88.8 10 11 2.5e-06 0.0032 17.8 2.6 1 23 290 312 290 312 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF124-206 - 351 7e-31 105.0 88.8 11 11 5.1e-09 6.6e-06 26.3 1.0 1 23 318 340 318 340 0.99 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZNF124-206 - 351 3.8e-26 89.5 79.1 1 11 4.7 6.1e+03 -1.4 0.1 15 23 71 78 64 79 0.72 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF124-206 - 351 3.8e-26 89.5 79.1 2 11 3.1 3.9e+03 -0.8 0.5 2 8 85 91 84 92 0.80 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF124-206 - 351 3.8e-26 89.5 79.1 3 11 0.17 2.1e+02 3.2 1.0 2 16 95 109 94 114 0.77 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF124-206 - 351 3.8e-26 89.5 79.1 4 11 6.7e-05 0.086 13.7 0.2 2 23 123 144 122 145 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF124-206 - 351 3.8e-26 89.5 79.1 5 11 0.0015 1.9 9.6 0.3 1 23 150 172 150 173 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF124-206 - 351 3.8e-26 89.5 79.1 6 11 1.7e-07 0.00021 21.8 2.1 1 23 178 200 178 201 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF124-206 - 351 3.8e-26 89.5 79.1 7 11 8.1e-05 0.1 13.5 6.8 1 23 206 228 206 229 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF124-206 - 351 3.8e-26 89.5 79.1 8 11 7.5e-07 0.00096 19.8 0.5 1 23 234 256 234 257 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF124-206 - 351 3.8e-26 89.5 79.1 9 11 3.7e-07 0.00048 20.8 0.6 1 23 262 284 262 285 0.97 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF124-206 - 351 3.8e-26 89.5 79.1 10 11 1.7e-06 0.0021 18.7 1.8 1 23 290 312 290 313 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF124-206 - 351 3.8e-26 89.5 79.1 11 11 3.8e-06 0.0049 17.6 1.3 1 23 318 340 318 341 0.96 C2H2-type zinc finger KRAB PF01352.27 42 ZNF124-206 - 351 1.1e-25 89.0 0.1 1 1 1.4e-28 1.8e-25 88.3 0.1 1 42 12 53 12 53 0.98 KRAB box zf-C2H2_6 PF13912.6 27 ZNF124-206 - 351 2.4e-10 40.1 83.0 1 10 0.66 8.5e+02 0.1 0.9 2 9 84 91 84 92 0.89 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF124-206 - 351 2.4e-10 40.1 83.0 2 10 1.6 2e+03 -1.1 1.7 4 10 96 102 95 102 0.87 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF124-206 - 351 2.4e-10 40.1 83.0 3 10 0.0014 1.7 8.7 0.7 1 12 121 132 121 132 0.92 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF124-206 - 351 2.4e-10 40.1 83.0 4 10 0.0033 4.2 7.5 0.4 2 24 150 172 150 175 0.91 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF124-206 - 351 2.4e-10 40.1 83.0 5 10 1.7e-05 0.022 14.7 2.4 1 24 177 200 177 203 0.92 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF124-206 - 351 2.4e-10 40.1 83.0 6 10 0.045 58 3.9 6.4 2 24 206 228 206 231 0.81 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF124-206 - 351 2.4e-10 40.1 83.0 7 10 4.7e-05 0.06 13.4 1.2 2 24 234 256 234 259 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF124-206 - 351 2.4e-10 40.1 83.0 8 10 1.4e-06 0.0018 18.2 1.2 2 24 262 284 262 287 0.95 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF124-206 - 351 2.4e-10 40.1 83.0 9 10 0.0034 4.4 7.4 1.8 2 24 290 312 290 315 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF124-206 - 351 2.4e-10 40.1 83.0 10 10 6.6e-06 0.0085 16.1 2.3 2 24 318 340 318 343 0.96 C2H2-type zinc finger # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF124-206.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF124-206.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF124-206.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF124-206.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF124-206.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:59:47 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZNF132-201 - 706 1.7e-123 398.1 131.0 1 21 9.2e-05 0.1 13.1 0.1 1 24 128 151 128 152 0.85 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF132-201 - 706 1.7e-123 398.1 131.0 2 21 0.066 74 4.0 0.4 1 15 156 170 156 172 0.87 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF132-201 - 706 1.7e-123 398.1 131.0 3 21 0.0021 2.3 8.8 0.0 1 19 178 196 178 200 0.84 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF132-201 - 706 1.7e-123 398.1 131.0 4 21 0.00038 0.43 11.1 0.4 12 25 233 246 216 247 0.88 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF132-201 - 706 1.7e-123 398.1 131.0 5 21 0.0032 3.6 8.2 0.2 5 18 254 267 252 270 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF132-201 - 706 1.7e-123 398.1 131.0 6 21 4.4e-06 0.005 17.2 3.2 7 26 283 302 282 302 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF132-201 - 706 1.7e-123 398.1 131.0 7 21 1.9e-08 2.1e-05 24.7 4.4 2 26 306 330 305 330 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF132-201 - 706 1.7e-123 398.1 131.0 8 21 3.7e-10 4.2e-07 30.1 0.7 4 26 336 358 334 358 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF132-201 - 706 1.7e-123 398.1 131.0 9 21 3.3e-10 3.7e-07 30.3 0.8 1 25 361 385 361 386 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF132-201 - 706 1.7e-123 398.1 131.0 10 21 2.2e-10 2.5e-07 30.8 0.8 1 25 389 413 389 414 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF132-201 - 706 1.7e-123 398.1 131.0 11 21 5.9e-10 6.6e-07 29.5 0.0 2 26 418 442 417 442 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF132-201 - 706 1.7e-123 398.1 131.0 12 21 1.9e-10 2.2e-07 31.0 0.1 1 25 445 469 445 470 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF132-201 - 706 1.7e-123 398.1 131.0 13 21 1.4e-09 1.5e-06 28.3 2.3 1 26 473 498 473 498 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF132-201 - 706 1.7e-123 398.1 131.0 14 21 7.4e-11 8.3e-08 32.3 0.5 3 25 503 525 502 526 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF132-201 - 706 1.7e-123 398.1 131.0 15 21 5.3e-11 5.9e-08 32.8 0.2 2 26 530 554 529 554 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF132-201 - 706 1.7e-123 398.1 131.0 16 21 2.1e-08 2.4e-05 24.6 0.5 5 25 561 581 558 582 0.90 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF132-201 - 706 1.7e-123 398.1 131.0 17 21 5e-11 5.6e-08 32.9 2.0 2 25 586 609 586 610 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF132-201 - 706 1.7e-123 398.1 131.0 18 21 6.2e-09 7e-06 26.2 0.2 5 26 617 638 617 638 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF132-201 - 706 1.7e-123 398.1 131.0 19 21 4.9e-12 5.5e-09 36.1 0.5 1 25 641 665 641 666 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF132-201 - 706 1.7e-123 398.1 131.0 20 21 7.1e-09 7.9e-06 26.1 2.0 2 26 670 694 669 694 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF132-201 - 706 1.7e-123 398.1 131.0 21 21 1.2 1.4e+03 0.0 0.2 1 10 697 706 697 706 0.92 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZNF132-201 - 706 2e-82 267.3 134.8 1 18 0.14 1.6e+02 3.0 0.1 3 20 116 133 115 135 0.91 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF132-201 - 706 2e-82 267.3 134.8 2 18 0.0016 1.8 9.2 0.4 1 23 142 164 142 164 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF132-201 - 706 2e-82 267.3 134.8 3 18 0.0001 0.12 12.9 0.6 1 23 236 258 236 258 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF132-201 - 706 2e-82 267.3 134.8 4 18 4.6e-07 0.00051 20.3 5.5 1 23 291 313 291 313 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF132-201 - 706 2e-82 267.3 134.8 5 18 0.00049 0.55 10.8 3.1 1 23 319 341 319 341 0.90 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF132-201 - 706 2e-82 267.3 134.8 6 18 7.6e-09 8.5e-06 26.0 0.8 1 23 347 369 347 369 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF132-201 - 706 2e-82 267.3 134.8 7 18 8.5e-08 9.5e-05 22.6 1.1 1 23 375 397 375 397 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF132-201 - 706 2e-82 267.3 134.8 8 18 4.9e-09 5.5e-06 26.6 0.3 1 23 403 425 403 425 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF132-201 - 706 2e-82 267.3 134.8 9 18 7.2e-09 8.1e-06 26.0 0.2 1 23 431 453 431 453 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF132-201 - 706 2e-82 267.3 134.8 10 18 2.8e-08 3.1e-05 24.2 1.9 1 23 459 481 459 481 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF132-201 - 706 2e-82 267.3 134.8 11 18 2.9e-08 3.3e-05 24.1 1.3 1 23 487 509 487 509 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF132-201 - 706 2e-82 267.3 134.8 12 18 2.4e-08 2.7e-05 24.4 0.9 1 23 515 537 515 537 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF132-201 - 706 2e-82 267.3 134.8 13 18 9.7e-08 0.00011 22.5 0.2 1 23 543 565 543 565 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF132-201 - 706 2e-82 267.3 134.8 14 18 5.3e-07 0.0006 20.1 0.5 1 23 571 593 571 593 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF132-201 - 706 2e-82 267.3 134.8 15 18 2.2e-06 0.0025 18.2 3.4 1 23 599 621 599 621 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF132-201 - 706 2e-82 267.3 134.8 16 18 1.1e-09 1.2e-06 28.7 1.3 1 23 627 649 627 649 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF132-201 - 706 2e-82 267.3 134.8 17 18 3e-06 0.0034 17.8 0.3 1 23 655 677 655 677 0.95 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF132-201 - 706 2e-82 267.3 134.8 18 18 6e-05 0.067 13.7 3.6 1 23 683 705 683 705 0.98 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZNF132-201 - 706 5.3e-54 176.2 139.6 1 18 1.8 2e+03 0.1 0.1 3 19 116 132 115 136 0.78 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF132-201 - 706 5.3e-54 176.2 139.6 2 18 0.0013 1.5 9.9 0.5 1 23 142 164 142 165 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF132-201 - 706 5.3e-54 176.2 139.6 3 18 5.3e-05 0.06 14.2 0.6 1 23 236 258 236 259 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF132-201 - 706 5.3e-54 176.2 139.6 4 18 0.00032 0.36 11.8 5.1 1 23 291 313 291 314 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF132-201 - 706 5.3e-54 176.2 139.6 5 18 0.0018 2.1 9.4 2.6 1 23 319 341 319 342 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF132-201 - 706 5.3e-54 176.2 139.6 6 18 1.5e-06 0.0017 19.1 0.8 1 23 347 369 347 370 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF132-201 - 706 5.3e-54 176.2 139.6 7 18 3.8e-05 0.043 14.7 1.2 1 23 375 397 375 398 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF132-201 - 706 5.3e-54 176.2 139.6 8 18 1.1e-07 0.00012 22.6 0.6 1 23 403 425 403 426 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF132-201 - 706 5.3e-54 176.2 139.6 9 18 1e-05 0.011 16.5 0.2 1 23 431 453 431 454 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF132-201 - 706 5.3e-54 176.2 139.6 10 18 2e-06 0.0023 18.6 1.9 1 23 459 481 459 482 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF132-201 - 706 5.3e-54 176.2 139.6 11 18 5.3e-06 0.006 17.3 1.5 1 23 487 509 487 510 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF132-201 - 706 5.3e-54 176.2 139.6 12 18 1.1e-06 0.0013 19.4 1.1 1 23 515 537 515 538 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF132-201 - 706 5.3e-54 176.2 139.6 13 18 4.9e-05 0.055 14.3 0.6 1 23 543 565 543 566 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF132-201 - 706 5.3e-54 176.2 139.6 14 18 0.00015 0.17 12.8 0.5 1 23 571 593 571 594 0.84 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF132-201 - 706 5.3e-54 176.2 139.6 15 18 3.7e-05 0.042 14.7 3.8 1 23 599 621 599 622 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF132-201 - 706 5.3e-54 176.2 139.6 16 18 1.5e-06 0.0017 19.1 1.3 1 23 627 649 627 650 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF132-201 - 706 5.3e-54 176.2 139.6 17 18 5.7e-06 0.0064 17.2 0.4 1 23 655 677 655 678 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF132-201 - 706 5.3e-54 176.2 139.6 18 18 0.00046 0.52 11.3 3.6 1 23 683 705 683 706 0.95 C2H2-type zinc finger zf-C2H2_jaz PF12171.8 27 ZNF132-201 - 706 3.1e-24 84.7 83.7 1 17 1.5 1.6e+03 -0.5 0.2 2 22 142 162 141 165 0.70 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF132-201 - 706 3.1e-24 84.7 83.7 2 17 0.00014 0.16 12.3 0.1 2 24 236 258 235 259 0.95 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF132-201 - 706 3.1e-24 84.7 83.7 3 17 0.0008 0.9 9.9 0.8 2 22 291 311 290 311 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF132-201 - 706 3.1e-24 84.7 83.7 4 17 0.00097 1.1 9.6 1.9 2 21 319 338 318 339 0.89 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF132-201 - 706 3.1e-24 84.7 83.7 5 17 0.0004 0.44 10.9 0.1 2 22 347 367 346 367 0.95 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF132-201 - 706 3.1e-24 84.7 83.7 6 17 0.12 1.3e+02 3.0 0.1 2 22 375 395 374 395 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF132-201 - 706 3.1e-24 84.7 83.7 7 17 0.0003 0.34 11.3 0.0 2 22 403 423 402 423 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF132-201 - 706 3.1e-24 84.7 83.7 8 17 0.00019 0.22 11.9 0.2 2 22 431 451 430 451 0.95 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF132-201 - 706 3.1e-24 84.7 83.7 9 17 0.012 14 6.1 0.1 2 22 459 479 458 479 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF132-201 - 706 3.1e-24 84.7 83.7 10 17 0.00012 0.13 12.5 0.5 2 22 487 507 486 507 0.95 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF132-201 - 706 3.1e-24 84.7 83.7 11 17 5.8e-05 0.065 13.5 0.1 2 22 515 535 514 535 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF132-201 - 706 3.1e-24 84.7 83.7 12 17 0.0019 2.1 8.7 0.0 2 22 543 563 542 563 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF132-201 - 706 3.1e-24 84.7 83.7 13 17 0.066 74 3.8 0.7 2 22 571 591 570 591 0.89 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF132-201 - 706 3.1e-24 84.7 83.7 14 17 0.052 58 4.1 0.8 2 17 599 614 598 619 0.84 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF132-201 - 706 3.1e-24 84.7 83.7 15 17 0.0011 1.3 9.4 0.0 2 22 627 647 626 647 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF132-201 - 706 3.1e-24 84.7 83.7 16 17 0.00064 0.71 10.2 0.0 2 22 655 675 654 675 0.95 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF132-201 - 706 3.1e-24 84.7 83.7 17 17 4.8 5.4e+03 -2.1 1.7 2 13 683 694 682 703 0.76 Zinc-finger double-stranded RNA-binding KRAB PF01352.27 42 ZNF132-201 - 706 9.9e-23 79.5 1.1 1 1 1.6e-25 1.8e-22 78.7 1.1 1 42 37 78 37 78 0.98 KRAB box zf-C2H2_6 PF13912.6 27 ZNF132-201 - 706 3.2e-13 49.3 121.9 1 16 0.007 7.8 6.6 0.4 2 25 236 259 235 261 0.79 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF132-201 - 706 3.2e-13 49.3 121.9 2 16 0.0098 11 6.2 5.6 2 22 291 311 291 315 0.85 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF132-201 - 706 3.2e-13 49.3 121.9 3 16 0.042 47 4.1 0.7 1 12 318 329 318 330 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF132-201 - 706 3.2e-13 49.3 121.9 4 16 0.0014 1.5 8.9 2.1 2 12 347 357 347 368 0.92 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF132-201 - 706 3.2e-13 49.3 121.9 5 16 0.65 7.3e+02 0.3 0.4 2 12 375 385 375 386 0.92 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF132-201 - 706 3.2e-13 49.3 121.9 6 16 5e-06 0.0056 16.7 0.6 2 20 403 421 403 427 0.90 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF132-201 - 706 3.2e-13 49.3 121.9 7 16 0.0012 1.3 9.1 0.3 2 13 431 442 431 455 0.78 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF132-201 - 706 3.2e-13 49.3 121.9 8 16 0.0091 10 6.3 0.6 2 12 459 469 459 470 0.91 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF132-201 - 706 3.2e-13 49.3 121.9 9 16 1.6 1.8e+03 -0.9 1.8 2 12 487 497 487 509 0.83 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF132-201 - 706 3.2e-13 49.3 121.9 10 16 7.2e-05 0.081 13.0 0.5 2 20 515 533 515 538 0.90 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF132-201 - 706 3.2e-13 49.3 121.9 11 16 0.00065 0.72 9.9 0.4 2 12 543 553 543 567 0.86 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF132-201 - 706 3.2e-13 49.3 121.9 12 16 0.0063 7.1 6.8 0.7 2 12 571 581 571 594 0.83 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF132-201 - 706 3.2e-13 49.3 121.9 13 16 0.0088 9.8 6.3 2.7 2 18 599 615 599 621 0.80 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF132-201 - 706 3.2e-13 49.3 121.9 14 16 0.00041 0.46 10.6 0.6 2 13 627 638 627 650 0.91 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF132-201 - 706 3.2e-13 49.3 121.9 15 16 0.041 46 4.2 0.3 2 12 655 665 655 666 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF132-201 - 706 3.2e-13 49.3 121.9 16 16 8.2e-05 0.092 12.8 5.2 2 24 683 705 682 706 0.94 C2H2-type zinc finger zinc_ribbon_15 PF17032.5 86 ZNF132-201 - 706 1.8e-12 47.8 68.1 1 9 0.062 70 4.3 0.1 33 74 110 150 93 156 0.84 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF132-201 - 706 1.8e-12 47.8 68.1 2 9 0.1 1.2e+02 3.5 0.2 34 70 232 268 220 279 0.74 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF132-201 - 706 1.8e-12 47.8 68.1 3 9 0.001 1.2 10.0 5.7 37 81 290 334 278 361 0.90 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF132-201 - 706 1.8e-12 47.8 68.1 4 9 0.0021 2.3 9.0 4.0 24 81 333 390 330 417 0.66 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF132-201 - 706 1.8e-12 47.8 68.1 5 9 5.6e-05 0.062 14.0 0.6 26 78 419 471 416 474 0.89 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF132-201 - 706 1.8e-12 47.8 68.1 6 9 0.006 6.7 7.5 3.1 31 77 480 526 474 530 0.85 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF132-201 - 706 1.8e-12 47.8 68.1 7 9 2.4e-05 0.027 15.2 0.9 26 78 531 583 527 585 0.92 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF132-201 - 706 1.8e-12 47.8 68.1 8 9 0.00075 0.84 10.4 1.7 26 78 587 639 584 645 0.89 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF132-201 - 706 1.8e-12 47.8 68.1 9 9 0.0029 3.2 8.6 2.5 31 75 648 692 641 698 0.85 zinc-ribbon family Zn-ribbon_8 PF09723.10 40 ZNF132-201 - 706 6.1e-11 42.3 96.1 1 17 0.21 2.4e+02 1.9 2.1 6 34 142 149 114 152 0.50 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF132-201 - 706 6.1e-11 42.3 96.1 2 17 0.1 1.1e+02 3.0 0.2 6 15 142 151 141 161 0.89 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF132-201 - 706 6.1e-11 42.3 96.1 3 17 0.0072 8 6.7 0.1 6 33 236 270 235 277 0.74 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF132-201 - 706 6.1e-11 42.3 96.1 4 17 0.025 28 4.9 3.4 7 33 292 325 284 326 0.85 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF132-201 - 706 6.1e-11 42.3 96.1 5 17 0.00011 0.12 12.5 3.1 6 35 319 355 316 359 0.90 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF132-201 - 706 6.1e-11 42.3 96.1 6 17 0.007 7.8 6.7 0.6 6 18 347 359 346 368 0.81 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF132-201 - 706 6.1e-11 42.3 96.1 7 17 0.00055 0.61 10.2 2.8 6 38 375 414 374 416 0.88 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF132-201 - 706 6.1e-11 42.3 96.1 8 17 0.0054 6.1 7.1 0.3 6 17 403 414 402 423 0.85 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF132-201 - 706 6.1e-11 42.3 96.1 9 17 0.00087 0.98 9.6 5.2 6 35 431 467 430 471 0.90 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF132-201 - 706 6.1e-11 42.3 96.1 10 17 0.022 25 5.1 7.4 6 34 459 494 458 498 0.89 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF132-201 - 706 6.1e-11 42.3 96.1 11 17 0.059 66 3.7 7.2 6 38 487 526 486 527 0.88 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF132-201 - 706 6.1e-11 42.3 96.1 12 17 0.0074 8.3 6.6 5.5 6 34 515 550 514 554 0.81 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF132-201 - 706 6.1e-11 42.3 96.1 13 17 0.016 18 5.5 0.6 6 16 543 553 542 561 0.85 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF132-201 - 706 6.1e-11 42.3 96.1 14 17 1.9e-05 0.022 14.9 2.0 6 34 571 606 570 612 0.89 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF132-201 - 706 6.1e-11 42.3 96.1 15 17 0.00022 0.25 11.5 3.4 6 35 627 663 626 669 0.86 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF132-201 - 706 6.1e-11 42.3 96.1 16 17 0.00026 0.29 11.3 3.0 6 34 655 690 654 695 0.91 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF132-201 - 706 6.1e-11 42.3 96.1 17 17 0.003 3.4 7.9 0.8 6 22 683 699 682 705 0.82 Zinc ribbon domain zf_UBZ PF18439.1 32 ZNF132-201 - 706 5.5e-10 38.7 84.3 1 18 2.5 2.8e+03 -2.0 0.2 5 21 116 133 114 133 0.76 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF132-201 - 706 5.5e-10 38.7 84.3 2 18 0.15 1.7e+02 1.9 0.0 3 20 142 160 140 161 0.80 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF132-201 - 706 5.5e-10 38.7 84.3 3 18 0.0066 7.4 6.3 0.0 3 20 236 254 234 255 0.86 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF132-201 - 706 5.5e-10 38.7 84.3 4 18 0.0018 2 8.1 1.1 3 24 291 313 290 314 0.86 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF132-201 - 706 5.5e-10 38.7 84.3 5 18 0.43 4.8e+02 0.5 0.2 2 13 318 329 317 338 0.83 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF132-201 - 706 5.5e-10 38.7 84.3 6 18 0.0073 8.2 6.1 0.1 3 13 347 357 345 362 0.87 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF132-201 - 706 5.5e-10 38.7 84.3 7 18 0.085 95 2.7 0.1 3 20 375 393 374 394 0.80 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF132-201 - 706 5.5e-10 38.7 84.3 8 18 0.0011 1.2 8.8 0.1 3 20 403 421 401 421 0.82 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF132-201 - 706 5.5e-10 38.7 84.3 9 18 0.011 12 5.6 0.1 3 21 431 450 429 450 0.85 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF132-201 - 706 5.5e-10 38.7 84.3 10 18 0.023 25 4.5 0.3 3 16 459 473 458 478 0.78 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF132-201 - 706 5.5e-10 38.7 84.3 11 18 0.13 1.5e+02 2.1 0.6 3 21 487 506 486 506 0.83 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF132-201 - 706 5.5e-10 38.7 84.3 12 18 0.0054 6.1 6.5 0.3 3 20 515 533 513 533 0.81 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF132-201 - 706 5.5e-10 38.7 84.3 13 18 0.00073 0.82 9.3 0.4 3 20 543 561 541 561 0.92 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF132-201 - 706 5.5e-10 38.7 84.3 14 18 0.014 16 5.2 0.1 3 15 571 583 569 590 0.84 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF132-201 - 706 5.5e-10 38.7 84.3 15 18 0.0057 6.4 6.5 0.8 3 14 599 610 597 617 0.80 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF132-201 - 706 5.5e-10 38.7 84.3 16 18 0.0091 10 5.8 0.1 3 15 627 639 625 646 0.84 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF132-201 - 706 5.5e-10 38.7 84.3 17 18 0.082 92 2.8 0.1 3 15 655 667 653 674 0.83 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF132-201 - 706 5.5e-10 38.7 84.3 18 18 0.0014 1.6 8.4 0.8 2 20 682 701 681 702 0.85 Ubiquitin-Binding Zinc Finger DZR PF12773.7 49 ZNF132-201 - 706 1.3e-09 37.9 75.0 1 3 0.00012 0.13 12.3 0.3 8 42 109 155 106 157 0.89 Double zinc ribbon DZR PF12773.7 49 ZNF132-201 - 706 1.3e-09 37.9 75.0 2 3 0.94 1.1e+03 -0.2 15.5 31 49 321 353 227 393 0.62 Double zinc ribbon DZR PF12773.7 49 ZNF132-201 - 706 1.3e-09 37.9 75.0 3 3 5.2e-05 0.058 13.4 4.2 1 45 377 447 377 449 0.83 Double zinc ribbon C1_1 PF00130.22 53 ZNF132-201 - 706 1.5e-07 31.2 79.1 1 11 0.04 45 4.0 0.2 8 35 110 148 106 152 0.74 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF132-201 - 706 1.5e-07 31.2 79.1 2 11 0.84 9.4e+02 -0.2 0.3 13 21 237 245 229 254 0.67 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF132-201 - 706 1.5e-07 31.2 79.1 3 11 0.016 18 5.3 4.4 11 40 290 330 283 331 0.87 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF132-201 - 706 1.5e-07 31.2 79.1 4 11 0.0083 9.3 6.2 2.3 1 38 336 384 333 387 0.80 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF132-201 - 706 1.5e-07 31.2 79.1 5 11 0.00011 0.12 12.2 0.3 1 38 393 440 393 443 0.84 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF132-201 - 706 1.5e-07 31.2 79.1 6 11 0.00041 0.46 10.4 0.1 2 36 421 466 420 473 0.88 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF132-201 - 706 1.5e-07 31.2 79.1 7 11 0.015 17 5.4 3.2 4 37 480 523 473 527 0.80 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF132-201 - 706 1.5e-07 31.2 79.1 8 11 0.012 13 5.8 0.2 2 21 533 552 532 559 0.87 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF132-201 - 706 1.5e-07 31.2 79.1 9 11 0.0001 0.12 12.3 3.0 2 35 561 605 561 605 0.87 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF132-201 - 706 1.5e-07 31.2 79.1 10 11 0.0003 0.34 10.8 3.4 3 37 591 635 586 639 0.81 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF132-201 - 706 1.5e-07 31.2 79.1 11 11 0.00095 1.1 9.2 3.6 1 42 645 696 645 704 0.87 Phorbol esters/diacylglycerol binding domain (C1 domain) # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF132-201.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF132-201.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF132-201.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF132-201.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF132-201.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:59:47 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZNF132-202 - 589 2.6e-125 403.8 131.0 1 21 9.3e-05 0.083 13.4 0.1 1 24 11 34 11 35 0.85 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF132-202 - 589 2.6e-125 403.8 131.0 2 21 0.067 60 4.3 0.4 1 15 39 53 39 55 0.87 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF132-202 - 589 2.6e-125 403.8 131.0 3 21 0.0021 1.9 9.1 0.0 1 19 61 79 61 83 0.84 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF132-202 - 589 2.6e-125 403.8 131.0 4 21 0.00039 0.35 11.4 0.4 12 25 116 129 99 130 0.88 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF132-202 - 589 2.6e-125 403.8 131.0 5 21 0.0033 2.9 8.5 0.2 5 18 137 150 135 153 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF132-202 - 589 2.6e-125 403.8 131.0 6 21 4.5e-06 0.004 17.5 3.2 7 26 166 185 165 185 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF132-202 - 589 2.6e-125 403.8 131.0 7 21 1.9e-08 1.7e-05 25.0 4.4 2 26 189 213 188 213 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF132-202 - 589 2.6e-125 403.8 131.0 8 21 3.8e-10 3.4e-07 30.4 0.7 4 26 219 241 217 241 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF132-202 - 589 2.6e-125 403.8 131.0 9 21 3.4e-10 3e-07 30.6 0.8 1 25 244 268 244 269 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF132-202 - 589 2.6e-125 403.8 131.0 10 21 2.2e-10 2e-07 31.1 0.8 1 25 272 296 272 297 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF132-202 - 589 2.6e-125 403.8 131.0 11 21 6e-10 5.3e-07 29.8 0.0 2 26 301 325 300 325 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF132-202 - 589 2.6e-125 403.8 131.0 12 21 2e-10 1.8e-07 31.3 0.1 1 25 328 352 328 353 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF132-202 - 589 2.6e-125 403.8 131.0 13 21 1.4e-09 1.2e-06 28.6 2.3 1 26 356 381 356 381 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF132-202 - 589 2.6e-125 403.8 131.0 14 21 7.5e-11 6.8e-08 32.6 0.5 3 25 386 408 385 409 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF132-202 - 589 2.6e-125 403.8 131.0 15 21 5.3e-11 4.8e-08 33.1 0.2 2 26 413 437 412 437 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF132-202 - 589 2.6e-125 403.8 131.0 16 21 2.1e-08 1.9e-05 24.9 0.5 5 25 444 464 441 465 0.90 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF132-202 - 589 2.6e-125 403.8 131.0 17 21 5.1e-11 4.6e-08 33.1 2.0 2 25 469 492 469 493 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF132-202 - 589 2.6e-125 403.8 131.0 18 21 6.3e-09 5.7e-06 26.5 0.2 5 26 500 521 500 521 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF132-202 - 589 2.6e-125 403.8 131.0 19 21 4.9e-12 4.4e-09 36.4 0.5 1 25 524 548 524 549 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF132-202 - 589 2.6e-125 403.8 131.0 20 21 7.1e-09 6.4e-06 26.4 2.0 2 26 553 577 552 577 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF132-202 - 589 2.6e-125 403.8 131.0 21 21 1.3 1.1e+03 0.3 0.2 1 10 580 589 580 589 0.92 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZNF132-202 - 589 2.8e-83 270.0 133.0 1 17 0.0016 1.4 9.5 0.4 1 23 25 47 25 47 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF132-202 - 589 2.8e-83 270.0 133.0 2 17 0.00011 0.095 13.2 0.6 1 23 119 141 119 141 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF132-202 - 589 2.8e-83 270.0 133.0 3 17 4.6e-07 0.00041 20.6 5.5 1 23 174 196 174 196 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF132-202 - 589 2.8e-83 270.0 133.0 4 17 0.0005 0.45 11.1 3.1 1 23 202 224 202 224 0.90 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF132-202 - 589 2.8e-83 270.0 133.0 5 17 7.7e-09 6.9e-06 26.2 0.8 1 23 230 252 230 252 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF132-202 - 589 2.8e-83 270.0 133.0 6 17 8.6e-08 7.7e-05 22.9 1.1 1 23 258 280 258 280 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF132-202 - 589 2.8e-83 270.0 133.0 7 17 4.9e-09 4.4e-06 26.8 0.3 1 23 286 308 286 308 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF132-202 - 589 2.8e-83 270.0 133.0 8 17 7.3e-09 6.5e-06 26.3 0.2 1 23 314 336 314 336 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF132-202 - 589 2.8e-83 270.0 133.0 9 17 2.8e-08 2.5e-05 24.5 1.9 1 23 342 364 342 364 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF132-202 - 589 2.8e-83 270.0 133.0 10 17 2.9e-08 2.6e-05 24.4 1.3 1 23 370 392 370 392 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF132-202 - 589 2.8e-83 270.0 133.0 11 17 2.4e-08 2.1e-05 24.7 0.9 1 23 398 420 398 420 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF132-202 - 589 2.8e-83 270.0 133.0 12 17 9.8e-08 8.8e-05 22.8 0.2 1 23 426 448 426 448 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF132-202 - 589 2.8e-83 270.0 133.0 13 17 5.4e-07 0.00048 20.4 0.5 1 23 454 476 454 476 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF132-202 - 589 2.8e-83 270.0 133.0 14 17 2.2e-06 0.002 18.5 3.4 1 23 482 504 482 504 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF132-202 - 589 2.8e-83 270.0 133.0 15 17 1.1e-09 9.5e-07 28.9 1.3 1 23 510 532 510 532 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF132-202 - 589 2.8e-83 270.0 133.0 16 17 3e-06 0.0027 18.1 0.3 1 23 538 560 538 560 0.95 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF132-202 - 589 2.8e-83 270.0 133.0 17 17 6e-05 0.054 14.0 3.6 1 23 566 588 566 588 0.98 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZNF132-202 - 589 4.3e-56 182.7 135.7 1 17 0.0014 1.2 10.2 0.5 1 23 25 47 25 48 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF132-202 - 589 4.3e-56 182.7 135.7 2 17 5.4e-05 0.048 14.5 0.6 1 23 119 141 119 142 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF132-202 - 589 4.3e-56 182.7 135.7 3 17 0.00032 0.29 12.1 5.1 1 23 174 196 174 197 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF132-202 - 589 4.3e-56 182.7 135.7 4 17 0.0018 1.7 9.7 2.6 1 23 202 224 202 225 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF132-202 - 589 4.3e-56 182.7 135.7 5 17 1.5e-06 0.0013 19.3 0.8 1 23 230 252 230 253 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF132-202 - 589 4.3e-56 182.7 135.7 6 17 3.9e-05 0.035 15.0 1.2 1 23 258 280 258 281 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF132-202 - 589 4.3e-56 182.7 135.7 7 17 1.1e-07 9.8e-05 22.9 0.6 1 23 286 308 286 309 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF132-202 - 589 4.3e-56 182.7 135.7 8 17 1e-05 0.0092 16.7 0.2 1 23 314 336 314 337 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF132-202 - 589 4.3e-56 182.7 135.7 9 17 2.1e-06 0.0018 18.9 1.9 1 23 342 364 342 365 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF132-202 - 589 4.3e-56 182.7 135.7 10 17 5.4e-06 0.0048 17.6 1.5 1 23 370 392 370 393 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF132-202 - 589 4.3e-56 182.7 135.7 11 17 1.1e-06 0.001 19.7 1.1 1 23 398 420 398 421 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF132-202 - 589 4.3e-56 182.7 135.7 12 17 5e-05 0.045 14.6 0.6 1 23 426 448 426 449 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF132-202 - 589 4.3e-56 182.7 135.7 13 17 0.00015 0.14 13.1 0.5 1 23 454 476 454 477 0.84 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF132-202 - 589 4.3e-56 182.7 135.7 14 17 3.8e-05 0.034 15.0 3.8 1 23 482 504 482 505 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF132-202 - 589 4.3e-56 182.7 135.7 15 17 1.5e-06 0.0013 19.3 1.3 1 23 510 532 510 533 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF132-202 - 589 4.3e-56 182.7 135.7 16 17 5.8e-06 0.0052 17.5 0.4 1 23 538 560 538 561 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF132-202 - 589 4.3e-56 182.7 135.7 17 17 0.00047 0.42 11.6 3.6 1 23 566 588 566 589 0.95 C2H2-type zinc finger zf-C2H2_jaz PF12171.8 27 ZNF132-202 - 589 1.1e-25 89.3 83.7 1 17 1.5 1.3e+03 -0.2 0.2 2 22 25 45 24 48 0.70 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF132-202 - 589 1.1e-25 89.3 83.7 2 17 0.00014 0.13 12.6 0.1 2 24 119 141 118 142 0.95 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF132-202 - 589 1.1e-25 89.3 83.7 3 17 0.00082 0.73 10.2 0.8 2 22 174 194 173 194 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF132-202 - 589 1.1e-25 89.3 83.7 4 17 0.00099 0.88 9.9 1.9 2 21 202 221 201 222 0.89 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF132-202 - 589 1.1e-25 89.3 83.7 5 17 0.0004 0.36 11.2 0.1 2 22 230 250 229 250 0.95 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF132-202 - 589 1.1e-25 89.3 83.7 6 17 0.12 1.1e+02 3.3 0.1 2 22 258 278 257 278 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF132-202 - 589 1.1e-25 89.3 83.7 7 17 0.00031 0.27 11.5 0.0 2 22 286 306 285 306 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF132-202 - 589 1.1e-25 89.3 83.7 8 17 0.0002 0.18 12.2 0.2 2 22 314 334 313 334 0.95 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF132-202 - 589 1.1e-25 89.3 83.7 9 17 0.012 11 6.4 0.1 2 22 342 362 341 362 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF132-202 - 589 1.1e-25 89.3 83.7 10 17 0.00012 0.11 12.8 0.5 2 22 370 390 369 390 0.95 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF132-202 - 589 1.1e-25 89.3 83.7 11 17 5.9e-05 0.053 13.8 0.1 2 22 398 418 397 418 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF132-202 - 589 1.1e-25 89.3 83.7 12 17 0.0019 1.7 9.0 0.0 2 22 426 446 425 446 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF132-202 - 589 1.1e-25 89.3 83.7 13 17 0.067 60 4.1 0.7 2 22 454 474 453 474 0.89 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF132-202 - 589 1.1e-25 89.3 83.7 14 17 0.053 47 4.4 0.8 2 17 482 497 481 502 0.84 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF132-202 - 589 1.1e-25 89.3 83.7 15 17 0.0011 1 9.7 0.0 2 22 510 530 509 530 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF132-202 - 589 1.1e-25 89.3 83.7 16 17 0.00065 0.58 10.5 0.0 2 22 538 558 537 558 0.95 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF132-202 - 589 1.1e-25 89.3 83.7 17 17 4.9 4.4e+03 -1.9 1.7 2 13 566 577 565 586 0.76 Zinc-finger double-stranded RNA-binding zf-C2H2_6 PF13912.6 27 ZNF132-202 - 589 1.4e-14 53.7 122.0 1 16 0.0071 6.3 6.9 0.4 2 25 119 142 118 144 0.79 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF132-202 - 589 1.4e-14 53.7 122.0 2 16 0.01 8.9 6.4 5.6 2 23 174 195 174 198 0.85 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF132-202 - 589 1.4e-14 53.7 122.0 3 16 0.043 39 4.4 0.7 1 12 201 212 201 213 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF132-202 - 589 1.4e-14 53.7 122.0 4 16 0.0016 1.4 9.0 2.3 2 12 230 240 230 251 0.92 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF132-202 - 589 1.4e-14 53.7 122.0 5 16 0.67 6e+02 0.6 0.4 2 12 258 268 258 269 0.92 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF132-202 - 589 1.4e-14 53.7 122.0 6 16 5e-06 0.0045 16.9 0.6 2 20 286 304 286 310 0.90 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF132-202 - 589 1.4e-14 53.7 122.0 7 16 0.0012 1.1 9.4 0.3 2 13 314 325 314 338 0.78 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF132-202 - 589 1.4e-14 53.7 122.0 8 16 0.0093 8.4 6.5 0.6 2 12 342 352 342 353 0.91 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF132-202 - 589 1.4e-14 53.7 122.0 9 16 1.5 1.3e+03 -0.5 1.7 2 12 370 380 370 393 0.82 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF132-202 - 589 1.4e-14 53.7 122.0 10 16 7.3e-05 0.066 13.2 0.5 2 20 398 416 398 421 0.90 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF132-202 - 589 1.4e-14 53.7 122.0 11 16 0.00066 0.59 10.2 0.4 2 12 426 436 426 450 0.86 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF132-202 - 589 1.4e-14 53.7 122.0 12 16 0.0064 5.8 7.0 0.7 2 12 454 464 454 477 0.83 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF132-202 - 589 1.4e-14 53.7 122.0 13 16 0.009 8 6.6 2.7 2 18 482 498 482 504 0.80 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF132-202 - 589 1.4e-14 53.7 122.0 14 16 0.00042 0.37 10.8 0.6 2 13 510 521 510 533 0.91 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF132-202 - 589 1.4e-14 53.7 122.0 15 16 0.042 37 4.5 0.3 2 12 538 548 538 549 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF132-202 - 589 1.4e-14 53.7 122.0 16 16 8.3e-05 0.075 13.1 5.2 2 24 566 588 565 589 0.94 C2H2-type zinc finger Zn-ribbon_8 PF09723.10 40 ZNF132-202 - 589 2.8e-13 49.7 91.0 1 16 0.084 75 3.6 0.1 6 15 25 34 20 46 0.87 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF132-202 - 589 2.8e-13 49.7 91.0 2 16 0.0072 6.5 7.0 0.1 6 33 119 153 118 160 0.74 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF132-202 - 589 2.8e-13 49.7 91.0 3 16 0.031 27 5.0 3.7 7 33 175 208 167 209 0.85 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF132-202 - 589 2.8e-13 49.7 91.0 4 16 0.00012 0.1 12.7 3.3 6 35 202 238 199 243 0.90 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF132-202 - 589 2.8e-13 49.7 91.0 5 16 0.0071 6.3 7.0 0.6 6 18 230 242 229 251 0.81 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF132-202 - 589 2.8e-13 49.7 91.0 6 16 0.00061 0.55 10.4 2.9 6 38 258 297 257 298 0.88 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF132-202 - 589 2.8e-13 49.7 91.0 7 16 0.0058 5.2 7.3 0.3 6 17 286 297 285 304 0.84 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF132-202 - 589 2.8e-13 49.7 91.0 8 16 0.00086 0.77 9.9 5.2 6 35 314 350 313 354 0.90 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF132-202 - 589 2.8e-13 49.7 91.0 9 16 0.024 21 5.3 7.5 6 34 342 377 341 381 0.89 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF132-202 - 589 2.8e-13 49.7 91.0 10 16 0.056 50 4.1 7.1 6 38 370 409 369 410 0.88 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF132-202 - 589 2.8e-13 49.7 91.0 11 16 0.0084 7.5 6.8 5.6 6 34 398 433 397 436 0.81 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF132-202 - 589 2.8e-13 49.7 91.0 12 16 0.016 14 5.9 0.6 6 16 426 436 424 444 0.86 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF132-202 - 589 2.8e-13 49.7 91.0 13 16 1.9e-05 0.017 15.2 2.0 6 34 454 489 453 495 0.89 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF132-202 - 589 2.8e-13 49.7 91.0 14 16 0.00027 0.24 11.5 3.6 6 35 510 546 509 551 0.86 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF132-202 - 589 2.8e-13 49.7 91.0 15 16 0.00025 0.22 11.7 3.0 6 34 538 573 537 578 0.91 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF132-202 - 589 2.8e-13 49.7 91.0 16 16 0.0029 2.6 8.2 0.7 6 22 566 582 564 588 0.83 Zinc ribbon domain zf_UBZ PF18439.1 32 ZNF132-202 - 589 9.2e-13 47.5 79.2 1 17 0.16 1.4e+02 2.2 0.0 3 20 25 43 23 44 0.80 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF132-202 - 589 9.2e-13 47.5 79.2 2 17 0.0067 6 6.5 0.0 3 20 119 137 117 138 0.86 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF132-202 - 589 9.2e-13 47.5 79.2 3 17 0.0018 1.7 8.3 1.1 3 24 174 196 173 197 0.86 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF132-202 - 589 9.2e-13 47.5 79.2 4 17 0.44 3.9e+02 0.8 0.2 2 13 201 212 200 221 0.83 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF132-202 - 589 9.2e-13 47.5 79.2 5 17 0.0075 6.7 6.4 0.1 3 13 230 240 228 245 0.87 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF132-202 - 589 9.2e-13 47.5 79.2 6 17 0.087 78 3.0 0.1 3 20 258 276 257 277 0.80 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF132-202 - 589 9.2e-13 47.5 79.2 7 17 0.0011 0.97 9.1 0.1 3 20 286 304 284 304 0.82 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF132-202 - 589 9.2e-13 47.5 79.2 8 17 0.011 9.9 5.9 0.1 3 21 314 333 312 333 0.85 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF132-202 - 589 9.2e-13 47.5 79.2 9 17 0.02 18 5.0 0.3 3 16 342 356 340 361 0.79 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF132-202 - 589 9.2e-13 47.5 79.2 10 17 0.13 1.2e+02 2.4 0.6 3 21 370 389 369 389 0.83 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF132-202 - 589 9.2e-13 47.5 79.2 11 17 0.0055 4.9 6.8 0.3 3 20 398 416 396 416 0.81 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF132-202 - 589 9.2e-13 47.5 79.2 12 17 0.00074 0.67 9.6 0.4 3 20 426 444 424 444 0.92 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF132-202 - 589 9.2e-13 47.5 79.2 13 17 0.015 13 5.5 0.1 3 15 454 466 452 473 0.84 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF132-202 - 589 9.2e-13 47.5 79.2 14 17 0.0058 5.2 6.7 0.8 3 14 482 493 480 500 0.80 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF132-202 - 589 9.2e-13 47.5 79.2 15 17 0.0092 8.3 6.1 0.1 3 15 510 522 508 529 0.84 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF132-202 - 589 9.2e-13 47.5 79.2 16 17 0.084 75 3.0 0.1 3 15 538 550 536 557 0.83 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF132-202 - 589 9.2e-13 47.5 79.2 17 17 0.0014 1.3 8.7 0.8 2 20 565 584 564 585 0.85 Ubiquitin-Binding Zinc Finger zinc_ribbon_15 PF17032.5 86 ZNF132-202 - 589 2.6e-12 47.3 66.9 1 9 3.2 2.8e+03 -0.9 0.0 62 74 21 33 2 57 0.63 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF132-202 - 589 2.6e-12 47.3 66.9 2 9 0.11 97 3.8 0.2 34 70 115 151 106 162 0.74 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF132-202 - 589 2.6e-12 47.3 66.9 3 9 0.0001 0.092 13.5 2.3 37 81 173 217 164 220 0.88 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF132-202 - 589 2.6e-12 47.3 66.9 4 9 0.0018 1.6 9.5 3.9 24 81 216 273 213 301 0.66 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF132-202 - 589 2.6e-12 47.3 66.9 5 9 5.2e-05 0.047 14.5 0.6 26 78 302 354 298 357 0.89 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF132-202 - 589 2.6e-12 47.3 66.9 6 9 0.0055 4.9 8.0 3.0 31 77 363 409 357 413 0.85 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF132-202 - 589 2.6e-12 47.3 66.9 7 9 2.1e-05 0.019 15.7 0.9 26 78 414 466 410 469 0.92 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF132-202 - 589 2.6e-12 47.3 66.9 8 9 0.00079 0.71 10.7 1.9 26 78 470 522 466 526 0.89 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF132-202 - 589 2.6e-12 47.3 66.9 9 9 0.0033 3 8.7 2.6 31 75 531 575 525 581 0.85 zinc-ribbon family XPA_N PF01286.18 32 ZNF132-202 - 589 6.4e-10 38.9 71.5 1 17 8.9 8e+03 -3.0 0.1 3 11 26 34 25 34 0.82 XPA protein N-terminal XPA_N PF01286.18 32 ZNF132-202 - 589 6.4e-10 38.9 71.5 2 17 0.027 24 5.1 0.4 3 14 120 131 119 134 0.93 XPA protein N-terminal XPA_N PF01286.18 32 ZNF132-202 - 589 6.4e-10 38.9 71.5 3 17 0.0014 1.3 9.1 0.1 3 14 175 186 173 196 0.80 XPA protein N-terminal XPA_N PF01286.18 32 ZNF132-202 - 589 6.4e-10 38.9 71.5 4 17 0.15 1.3e+02 2.7 0.1 3 11 203 211 201 213 0.87 XPA protein N-terminal XPA_N PF01286.18 32 ZNF132-202 - 589 6.4e-10 38.9 71.5 5 17 0.0026 2.3 8.3 0.1 3 12 231 240 229 248 0.86 XPA protein N-terminal XPA_N PF01286.18 32 ZNF132-202 - 589 6.4e-10 38.9 71.5 6 17 0.013 12 6.0 0.3 3 14 259 270 257 274 0.92 XPA protein N-terminal XPA_N PF01286.18 32 ZNF132-202 - 589 6.4e-10 38.9 71.5 7 17 0.026 24 5.1 0.1 3 14 287 298 285 307 0.86 XPA protein N-terminal XPA_N PF01286.18 32 ZNF132-202 - 589 6.4e-10 38.9 71.5 8 17 0.049 44 4.2 0.1 3 12 315 324 313 332 0.86 XPA protein N-terminal XPA_N PF01286.18 32 ZNF132-202 - 589 6.4e-10 38.9 71.5 9 17 0.018 16 5.6 0.3 3 14 343 354 341 360 0.87 XPA protein N-terminal XPA_N PF01286.18 32 ZNF132-202 - 589 6.4e-10 38.9 71.5 10 17 0.048 43 4.3 1.3 3 14 371 382 369 386 0.92 XPA protein N-terminal XPA_N PF01286.18 32 ZNF132-202 - 589 6.4e-10 38.9 71.5 11 17 0.036 32 4.7 0.2 3 14 399 410 397 417 0.89 XPA protein N-terminal XPA_N PF01286.18 32 ZNF132-202 - 589 6.4e-10 38.9 71.5 12 17 0.002 1.8 8.7 0.0 3 14 427 438 425 447 0.84 XPA protein N-terminal XPA_N PF01286.18 32 ZNF132-202 - 589 6.4e-10 38.9 71.5 13 17 0.055 49 4.1 0.1 3 12 455 464 453 472 0.79 XPA protein N-terminal XPA_N PF01286.18 32 ZNF132-202 - 589 6.4e-10 38.9 71.5 14 17 0.1 94 3.2 0.2 3 11 483 491 481 497 0.88 XPA protein N-terminal XPA_N PF01286.18 32 ZNF132-202 - 589 6.4e-10 38.9 71.5 15 17 0.043 38 4.4 0.1 3 12 511 520 509 528 0.83 XPA protein N-terminal XPA_N PF01286.18 32 ZNF132-202 - 589 6.4e-10 38.9 71.5 16 17 0.04 36 4.5 0.0 3 12 539 548 537 556 0.86 XPA protein N-terminal XPA_N PF01286.18 32 ZNF132-202 - 589 6.4e-10 38.9 71.5 17 17 0.41 3.6e+02 1.3 0.2 3 11 567 575 566 577 0.87 XPA protein N-terminal DZR PF12773.7 49 ZNF132-202 - 589 5.3e-08 32.8 74.0 1 3 0.068 61 3.7 0.1 27 39 18 35 1 44 0.61 Double zinc ribbon DZR PF12773.7 49 ZNF132-202 - 589 5.3e-08 32.8 74.0 2 3 0.69 6.2e+02 0.5 15.1 31 49 204 236 114 276 0.61 Double zinc ribbon DZR PF12773.7 49 ZNF132-202 - 589 5.3e-08 32.8 74.0 3 3 0.00056 0.5 10.4 9.2 1 49 260 348 260 348 0.81 Double zinc ribbon C1_1 PF00130.22 53 ZNF132-202 - 589 1e-06 28.5 80.5 1 11 1.5 1.3e+03 -0.7 0.2 9 22 22 35 15 47 0.76 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF132-202 - 589 1e-06 28.5 80.5 2 11 0.86 7.7e+02 0.1 0.3 13 21 120 128 112 137 0.67 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF132-202 - 589 1e-06 28.5 80.5 3 11 0.016 14 5.6 4.4 11 40 173 213 166 214 0.87 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF132-202 - 589 1e-06 28.5 80.5 4 11 0.0082 7.4 6.6 2.3 1 38 219 267 216 270 0.80 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF132-202 - 589 1e-06 28.5 80.5 5 11 0.00012 0.1 12.5 0.4 1 38 276 323 276 326 0.84 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF132-202 - 589 1e-06 28.5 80.5 6 11 0.00041 0.37 10.7 0.1 2 36 304 349 303 356 0.88 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF132-202 - 589 1e-06 28.5 80.5 7 11 0.016 14 5.6 3.3 4 37 363 406 356 410 0.80 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF132-202 - 589 1e-06 28.5 80.5 8 11 0.012 11 6.0 0.2 2 21 416 435 415 442 0.87 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF132-202 - 589 1e-06 28.5 80.5 9 11 0.00082 0.73 9.8 0.6 2 23 444 465 444 478 0.83 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF132-202 - 589 1e-06 28.5 80.5 10 11 0.0005 0.45 10.5 4.1 3 37 474 518 472 524 0.81 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF132-202 - 589 1e-06 28.5 80.5 11 11 0.0013 1.1 9.2 4.0 1 42 528 579 528 587 0.87 Phorbol esters/diacylglycerol binding domain (C1 domain) # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF132-202.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF132-202.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF132-202.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF132-202.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF132-202.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:59:48 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF132-203.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF132-203.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF132-203.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF132-203.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF132-203.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:59:48 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-C2H2 PF00096.26 23 ZNF133-201 - 654 1e-81 265.1 103.7 1 15 2.5e-06 0.0023 18.3 0.3 3 23 216 236 214 236 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF133-201 - 654 1e-81 265.1 103.7 2 15 4.9e-06 0.0044 17.4 0.2 1 23 242 264 242 264 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF133-201 - 654 1e-81 265.1 103.7 3 15 3e-07 0.00027 21.2 0.2 2 23 271 292 270 292 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF133-201 - 654 1e-81 265.1 103.7 4 15 4.3e-09 3.9e-06 27.0 0.5 1 23 298 320 298 320 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF133-201 - 654 1e-81 265.1 103.7 5 15 1.7e-08 1.5e-05 25.1 0.4 1 23 326 348 326 348 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF133-201 - 654 1e-81 265.1 103.7 6 15 1.8e-08 1.6e-05 25.1 0.1 2 23 355 376 354 376 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF133-201 - 654 1e-81 265.1 103.7 7 15 1e-07 9.1e-05 22.7 3.5 1 23 382 404 382 404 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF133-201 - 654 1e-81 265.1 103.7 8 15 1.5e-08 1.4e-05 25.3 1.5 1 23 410 432 410 432 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF133-201 - 654 1e-81 265.1 103.7 9 15 5.1e-08 4.5e-05 23.7 0.7 1 23 438 460 438 460 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF133-201 - 654 1e-81 265.1 103.7 10 15 3.5e-10 3.1e-07 30.5 0.4 2 23 467 488 466 488 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF133-201 - 654 1e-81 265.1 103.7 11 15 4.1e-09 3.7e-06 27.1 0.2 2 23 495 516 494 516 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF133-201 - 654 1e-81 265.1 103.7 12 15 1.3e-07 0.00012 22.4 1.1 1 23 522 544 522 544 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF133-201 - 654 1e-81 265.1 103.7 13 15 3.5e-05 0.031 14.7 0.2 1 23 550 572 550 572 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF133-201 - 654 1e-81 265.1 103.7 14 15 0.00016 0.15 12.6 3.3 2 23 579 600 578 600 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF133-201 - 654 1e-81 265.1 103.7 15 15 2.2e-06 0.0019 18.5 2.6 1 22 606 627 606 631 0.94 Zinc finger, C2H2 type zf-H2C2_2 PF13465.6 26 ZNF133-201 - 654 7.3e-78 253.8 77.9 1 16 9.8 8.8e+03 -2.5 0.1 16 25 215 224 212 225 0.82 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF133-201 - 654 7.3e-78 253.8 77.9 2 16 2e-08 1.7e-05 25.0 0.1 1 25 228 252 228 252 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF133-201 - 654 7.3e-78 253.8 77.9 3 16 8.6e-07 0.00077 19.8 0.1 1 25 256 280 256 281 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF133-201 - 654 7.3e-78 253.8 77.9 4 16 9.5e-08 8.6e-05 22.8 0.1 5 25 288 308 285 309 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF133-201 - 654 7.3e-78 253.8 77.9 5 16 6.5e-09 5.8e-06 26.5 0.1 2 25 313 336 312 337 0.90 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF133-201 - 654 7.3e-78 253.8 77.9 6 16 9.2e-05 0.083 13.4 0.0 2 24 341 363 340 364 0.88 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF133-201 - 654 7.3e-78 253.8 77.9 7 16 1.5e-08 1.4e-05 25.3 1.4 1 24 368 391 368 393 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF133-201 - 654 7.3e-78 253.8 77.9 8 16 1.3e-07 0.00012 22.3 0.8 2 25 397 420 396 421 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF133-201 - 654 7.3e-78 253.8 77.9 9 16 1.9e-08 1.7e-05 25.0 0.1 3 24 426 447 425 448 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF133-201 - 654 7.3e-78 253.8 77.9 10 16 5.2e-08 4.7e-05 23.6 0.2 1 25 452 476 452 477 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF133-201 - 654 7.3e-78 253.8 77.9 11 16 3.8e-07 0.00034 20.9 0.0 1 25 480 504 480 505 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF133-201 - 654 7.3e-78 253.8 77.9 12 16 5.1e-09 4.6e-06 26.8 0.3 1 26 508 533 508 533 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF133-201 - 654 7.3e-78 253.8 77.9 13 16 5.3e-07 0.00048 20.4 0.4 2 25 537 560 536 561 0.90 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF133-201 - 654 7.3e-78 253.8 77.9 14 16 0.005 4.5 7.9 0.4 2 25 565 588 564 589 0.89 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF133-201 - 654 7.3e-78 253.8 77.9 15 16 3.9e-08 3.5e-05 24.0 0.6 1 24 592 615 592 617 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF133-201 - 654 7.3e-78 253.8 77.9 16 16 3.4 3e+03 -1.1 1.9 2 12 617 627 616 638 0.67 Zinc-finger double domain zf-C2H2_4 PF13894.6 24 ZNF133-201 - 654 3.1e-49 161.4 101.4 1 16 2.3 2e+03 0.1 0.3 4 14 83 93 83 103 0.68 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF133-201 - 654 3.1e-49 161.4 101.4 2 16 0.00061 0.55 11.2 0.3 2 23 215 236 214 237 0.91 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF133-201 - 654 3.1e-49 161.4 101.4 3 16 8.1e-06 0.0073 17.1 0.4 1 23 242 264 242 265 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF133-201 - 654 3.1e-49 161.4 101.4 4 16 3e-05 0.027 15.3 0.1 2 23 271 292 270 293 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF133-201 - 654 3.1e-49 161.4 101.4 5 16 6.7e-06 0.006 17.3 0.4 1 23 298 320 298 321 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF133-201 - 654 3.1e-49 161.4 101.4 6 16 4.9e-06 0.0044 17.8 0.5 1 23 326 348 326 349 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF133-201 - 654 3.1e-49 161.4 101.4 7 16 5e-05 0.045 14.6 0.1 2 23 355 376 354 377 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF133-201 - 654 3.1e-49 161.4 101.4 8 16 1.9e-05 0.017 15.9 2.6 1 23 382 404 382 405 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF133-201 - 654 3.1e-49 161.4 101.4 9 16 4.5e-05 0.04 14.8 1.1 1 23 410 432 410 433 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF133-201 - 654 3.1e-49 161.4 101.4 10 16 1.9e-05 0.017 15.9 0.7 1 23 438 460 438 461 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF133-201 - 654 3.1e-49 161.4 101.4 11 16 3.5e-06 0.0032 18.2 0.3 2 23 467 488 466 489 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF133-201 - 654 3.1e-49 161.4 101.4 12 16 2.6e-05 0.023 15.5 0.2 3 23 496 516 495 517 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF133-201 - 654 3.1e-49 161.4 101.4 13 16 1.6e-05 0.014 16.2 1.0 1 23 522 544 522 545 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF133-201 - 654 3.1e-49 161.4 101.4 14 16 2.5e-05 0.022 15.6 0.2 1 23 550 572 550 573 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF133-201 - 654 3.1e-49 161.4 101.4 15 16 0.0085 7.6 7.7 3.0 2 23 579 600 578 601 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF133-201 - 654 3.1e-49 161.4 101.4 16 16 6.5e-05 0.058 14.3 1.4 1 22 606 627 606 629 0.93 C2H2-type zinc finger KRAB PF01352.27 42 ZNF133-201 - 654 1.3e-24 85.6 0.2 1 1 2.6e-27 2.3e-24 84.8 0.2 2 42 1 41 1 41 0.98 KRAB box zf-C2H2_jaz PF12171.8 27 ZNF133-201 - 654 5.7e-14 52.0 33.3 1 14 0.21 1.8e+02 2.5 0.0 3 22 215 234 214 234 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF133-201 - 654 5.7e-14 52.0 33.3 2 14 0.044 40 4.7 0.0 2 22 242 262 241 262 0.86 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF133-201 - 654 5.7e-14 52.0 33.3 3 14 0.0062 5.6 7.4 0.0 4 24 272 292 269 293 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF133-201 - 654 5.7e-14 52.0 33.3 4 14 0.019 17 5.8 0.1 2 24 298 320 297 321 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF133-201 - 654 5.7e-14 52.0 33.3 5 14 0.015 13 6.2 0.0 2 24 326 348 325 349 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF133-201 - 654 5.7e-14 52.0 33.3 6 14 0.087 78 3.7 0.1 4 24 356 376 354 377 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF133-201 - 654 5.7e-14 52.0 33.3 7 14 0.028 25 5.3 0.3 2 24 382 404 381 405 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF133-201 - 654 5.7e-14 52.0 33.3 8 14 2.1 1.9e+03 -0.7 0.1 2 24 410 432 409 432 0.86 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF133-201 - 654 5.7e-14 52.0 33.3 9 14 0.62 5.6e+02 1.0 0.0 2 21 438 457 437 458 0.79 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF133-201 - 654 5.7e-14 52.0 33.3 10 14 0.0043 3.8 7.9 0.1 4 24 468 488 465 489 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF133-201 - 654 5.7e-14 52.0 33.3 11 14 0.015 13 6.2 0.1 4 24 496 516 495 517 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF133-201 - 654 5.7e-14 52.0 33.3 12 14 0.051 45 4.5 0.0 2 22 522 542 521 545 0.88 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF133-201 - 654 5.7e-14 52.0 33.3 13 14 0.11 1e+02 3.4 0.0 2 22 550 570 549 570 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF133-201 - 654 5.7e-14 52.0 33.3 14 14 0.038 34 4.9 0.2 2 23 606 627 605 631 0.85 Zinc-finger double-stranded RNA-binding Zn-ribbon_8 PF09723.10 40 ZNF133-201 - 654 2.9e-09 36.9 61.7 1 14 0.057 51 4.1 0.5 8 34 216 249 213 255 0.80 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF133-201 - 654 2.9e-09 36.9 61.7 2 14 0.00099 0.89 9.7 0.8 6 35 242 278 241 283 0.83 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF133-201 - 654 2.9e-09 36.9 61.7 3 14 0.0059 5.2 7.3 2.7 7 34 271 305 270 310 0.79 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF133-201 - 654 2.9e-09 36.9 61.7 4 14 0.064 57 3.9 0.2 6 16 298 308 296 323 0.83 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF133-201 - 654 2.9e-09 36.9 61.7 5 14 3.3e-05 0.029 14.5 0.9 6 33 326 360 325 366 0.90 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF133-201 - 654 2.9e-09 36.9 61.7 6 14 0.033 30 4.8 6.2 6 34 382 417 381 421 0.83 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF133-201 - 654 2.9e-09 36.9 61.7 7 14 0.0027 2.4 8.3 0.7 6 33 410 444 409 445 0.78 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF133-201 - 654 2.9e-09 36.9 61.7 8 14 0.00016 0.14 12.3 0.2 6 34 438 473 437 479 0.86 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF133-201 - 654 2.9e-09 36.9 61.7 9 14 0.0017 1.5 9.0 1.9 7 34 467 501 466 507 0.84 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF133-201 - 654 2.9e-09 36.9 61.7 10 14 0.011 10 6.4 2.9 7 34 495 529 492 534 0.84 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF133-201 - 654 2.9e-09 36.9 61.7 11 14 0.00027 0.25 11.5 1.1 6 33 522 556 521 559 0.84 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF133-201 - 654 2.9e-09 36.9 61.7 12 14 0.016 14 5.9 4.1 6 35 550 587 549 591 0.75 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF133-201 - 654 2.9e-09 36.9 61.7 13 14 0.0029 2.6 8.2 1.8 8 34 580 613 579 620 0.88 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF133-201 - 654 2.9e-09 36.9 61.7 14 14 0.022 20 5.4 0.1 6 18 606 618 605 629 0.76 Zinc ribbon domain zinc_ribbon_15 PF17032.5 86 ZNF133-201 - 654 7.7e-09 36.2 45.1 1 7 0.0022 2 9.2 1.6 32 77 236 281 214 288 0.86 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF133-201 - 654 7.7e-09 36.2 45.1 2 7 0.00096 0.86 10.4 0.7 35 78 295 338 284 344 0.84 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF133-201 - 654 7.7e-09 36.2 45.1 3 7 0.00046 0.41 11.4 1.2 34 75 350 391 341 398 0.86 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF133-201 - 654 7.7e-09 36.2 45.1 4 7 0.0077 6.9 7.5 1.5 32 74 432 474 394 481 0.53 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF133-201 - 654 7.7e-09 36.2 45.1 5 7 0.00039 0.35 11.7 0.4 33 79 461 507 455 512 0.87 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF133-201 - 654 7.7e-09 36.2 45.1 6 7 0.00078 0.7 10.7 0.2 31 77 487 533 480 537 0.85 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF133-201 - 654 7.7e-09 36.2 45.1 7 7 0.11 1e+02 3.8 7.6 33 73 546 585 509 622 0.75 zinc-ribbon family zf-C2H2_11 PF16622.5 29 ZNF133-201 - 654 1.6e-07 30.9 81.8 1 15 0.0044 3.9 7.3 0.4 4 26 213 235 211 236 0.82 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF133-201 - 654 1.6e-07 30.9 81.8 2 15 0.1 94 2.9 0.2 10 23 244 260 242 262 0.82 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF133-201 - 654 1.6e-07 30.9 81.8 3 15 0.093 83 3.1 0.1 7 14 272 279 270 288 0.88 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF133-201 - 654 1.6e-07 30.9 81.8 4 15 0.061 55 3.6 0.1 7 16 300 309 297 317 0.83 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF133-201 - 654 1.6e-07 30.9 81.8 5 15 0.023 21 5.0 0.1 7 23 328 344 325 347 0.88 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF133-201 - 654 1.6e-07 30.9 81.8 6 15 0.036 33 4.4 0.1 3 15 352 364 350 374 0.80 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF133-201 - 654 1.6e-07 30.9 81.8 7 15 0.0039 3.5 7.5 0.8 7 15 384 392 381 402 0.79 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF133-201 - 654 1.6e-07 30.9 81.8 8 15 1.4 1.3e+03 -0.7 0.7 7 24 412 429 410 431 0.74 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF133-201 - 654 1.6e-07 30.9 81.8 9 15 0.0032 2.9 7.8 1.1 7 26 440 459 438 460 0.91 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF133-201 - 654 1.6e-07 30.9 81.8 10 15 0.0012 1.1 9.1 0.2 7 24 468 485 466 487 0.93 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF133-201 - 654 1.6e-07 30.9 81.8 11 15 0.13 1.1e+02 2.6 0.1 7 17 496 506 494 514 0.79 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF133-201 - 654 1.6e-07 30.9 81.8 12 15 0.00019 0.17 11.6 0.8 7 23 524 540 522 542 0.93 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF133-201 - 654 1.6e-07 30.9 81.8 13 15 0.025 23 4.9 0.2 7 20 552 565 549 570 0.77 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF133-201 - 654 1.6e-07 30.9 81.8 14 15 0.24 2.2e+02 1.7 0.7 5 14 578 587 574 598 0.83 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF133-201 - 654 1.6e-07 30.9 81.8 15 15 0.00092 0.83 9.5 2.1 7 24 608 625 606 628 0.94 zinc-finger C2H2-type ADK_lid PF05191.14 36 ZNF133-201 - 654 4.8e-07 29.7 51.5 1 12 0.43 3.8e+02 1.2 0.4 4 27 216 247 214 254 0.55 Adenylate kinase, active site lid ADK_lid PF05191.14 36 ZNF133-201 - 654 4.8e-07 29.7 51.5 2 12 0.00045 0.41 10.7 1.0 3 33 271 309 270 311 0.77 Adenylate kinase, active site lid ADK_lid PF05191.14 36 ZNF133-201 - 654 4.8e-07 29.7 51.5 3 12 0.0013 1.2 9.2 0.8 3 33 299 337 298 339 0.70 Adenylate kinase, active site lid ADK_lid PF05191.14 36 ZNF133-201 - 654 4.8e-07 29.7 51.5 4 12 0.034 30 4.7 1.1 3 28 327 360 325 367 0.69 Adenylate kinase, active site lid ADK_lid PF05191.14 36 ZNF133-201 - 654 4.8e-07 29.7 51.5 5 12 0.037 33 4.6 1.3 3 34 355 394 354 395 0.67 Adenylate kinase, active site lid ADK_lid PF05191.14 36 ZNF133-201 - 654 4.8e-07 29.7 51.5 6 12 0.0073 6.5 6.8 2.1 4 33 384 421 382 423 0.77 Adenylate kinase, active site lid ADK_lid PF05191.14 36 ZNF133-201 - 654 4.8e-07 29.7 51.5 7 12 0.054 48 4.0 2.3 3 28 411 444 410 451 0.72 Adenylate kinase, active site lid ADK_lid PF05191.14 36 ZNF133-201 - 654 4.8e-07 29.7 51.5 8 12 0.094 85 3.3 0.2 3 14 439 450 438 460 0.80 Adenylate kinase, active site lid ADK_lid PF05191.14 36 ZNF133-201 - 654 4.8e-07 29.7 51.5 9 12 2.1e-05 0.019 15.0 0.5 3 33 467 505 466 507 0.69 Adenylate kinase, active site lid ADK_lid PF05191.14 36 ZNF133-201 - 654 4.8e-07 29.7 51.5 10 12 0.015 13 5.8 2.7 3 28 523 556 522 591 0.63 Adenylate kinase, active site lid ADK_lid PF05191.14 36 ZNF133-201 - 654 4.8e-07 29.7 51.5 11 12 0.65 5.8e+02 0.6 0.2 3 11 579 587 578 598 0.72 Adenylate kinase, active site lid ADK_lid PF05191.14 36 ZNF133-201 - 654 4.8e-07 29.7 51.5 12 12 0.01 9.3 6.3 0.3 3 14 607 618 606 638 0.80 Adenylate kinase, active site lid # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF133-201.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF133-201.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF133-201.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF133-201.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF133-201.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:59:49 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF133-202.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF133-202.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF133-202.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF133-202.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF133-202.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:59:49 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-C2H2 PF00096.26 23 ZNF133-203 - 653 9.9e-82 265.1 103.7 1 15 2.5e-06 0.0023 18.3 0.3 3 23 215 235 213 235 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF133-203 - 653 9.9e-82 265.1 103.7 2 15 4.9e-06 0.0044 17.4 0.2 1 23 241 263 241 263 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF133-203 - 653 9.9e-82 265.1 103.7 3 15 3e-07 0.00027 21.2 0.2 2 23 270 291 269 291 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF133-203 - 653 9.9e-82 265.1 103.7 4 15 4.3e-09 3.9e-06 27.0 0.5 1 23 297 319 297 319 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF133-203 - 653 9.9e-82 265.1 103.7 5 15 1.7e-08 1.5e-05 25.1 0.4 1 23 325 347 325 347 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF133-203 - 653 9.9e-82 265.1 103.7 6 15 1.8e-08 1.6e-05 25.1 0.1 2 23 354 375 353 375 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF133-203 - 653 9.9e-82 265.1 103.7 7 15 1e-07 9.1e-05 22.7 3.5 1 23 381 403 381 403 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF133-203 - 653 9.9e-82 265.1 103.7 8 15 1.5e-08 1.4e-05 25.3 1.5 1 23 409 431 409 431 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF133-203 - 653 9.9e-82 265.1 103.7 9 15 5.1e-08 4.5e-05 23.7 0.7 1 23 437 459 437 459 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF133-203 - 653 9.9e-82 265.1 103.7 10 15 3.5e-10 3.1e-07 30.5 0.4 2 23 466 487 465 487 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF133-203 - 653 9.9e-82 265.1 103.7 11 15 4.1e-09 3.6e-06 27.1 0.2 2 23 494 515 493 515 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF133-203 - 653 9.9e-82 265.1 103.7 12 15 1.3e-07 0.00012 22.4 1.1 1 23 521 543 521 543 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF133-203 - 653 9.9e-82 265.1 103.7 13 15 3.5e-05 0.031 14.7 0.2 1 23 549 571 549 571 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF133-203 - 653 9.9e-82 265.1 103.7 14 15 0.00016 0.15 12.6 3.3 2 23 578 599 577 599 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF133-203 - 653 9.9e-82 265.1 103.7 15 15 2.2e-06 0.0019 18.5 2.6 1 22 605 626 605 630 0.94 Zinc finger, C2H2 type zf-H2C2_2 PF13465.6 26 ZNF133-203 - 653 7.1e-78 253.8 77.9 1 16 9.7 8.7e+03 -2.5 0.1 16 25 214 223 211 224 0.82 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF133-203 - 653 7.1e-78 253.8 77.9 2 16 1.9e-08 1.7e-05 25.0 0.1 1 25 227 251 227 251 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF133-203 - 653 7.1e-78 253.8 77.9 3 16 8.6e-07 0.00077 19.8 0.1 1 25 255 279 255 280 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF133-203 - 653 7.1e-78 253.8 77.9 4 16 9.5e-08 8.5e-05 22.8 0.1 5 25 287 307 284 308 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF133-203 - 653 7.1e-78 253.8 77.9 5 16 6.5e-09 5.8e-06 26.5 0.1 2 25 312 335 311 336 0.90 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF133-203 - 653 7.1e-78 253.8 77.9 6 16 9.2e-05 0.082 13.4 0.0 2 24 340 362 339 363 0.88 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF133-203 - 653 7.1e-78 253.8 77.9 7 16 1.5e-08 1.4e-05 25.3 1.4 1 24 367 390 367 392 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF133-203 - 653 7.1e-78 253.8 77.9 8 16 1.3e-07 0.00012 22.3 0.8 2 25 396 419 395 420 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF133-203 - 653 7.1e-78 253.8 77.9 9 16 1.9e-08 1.7e-05 25.0 0.1 3 24 425 446 424 447 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF133-203 - 653 7.1e-78 253.8 77.9 10 16 5.2e-08 4.7e-05 23.6 0.2 1 25 451 475 451 476 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF133-203 - 653 7.1e-78 253.8 77.9 11 16 3.8e-07 0.00034 20.9 0.0 1 25 479 503 479 504 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF133-203 - 653 7.1e-78 253.8 77.9 12 16 5.1e-09 4.6e-06 26.8 0.3 1 26 507 532 507 532 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF133-203 - 653 7.1e-78 253.8 77.9 13 16 5.3e-07 0.00048 20.4 0.4 2 25 536 559 535 560 0.90 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF133-203 - 653 7.1e-78 253.8 77.9 14 16 0.005 4.5 7.9 0.4 2 25 564 587 563 588 0.89 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF133-203 - 653 7.1e-78 253.8 77.9 15 16 3.8e-08 3.4e-05 24.0 0.6 1 24 591 614 591 616 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF133-203 - 653 7.1e-78 253.8 77.9 16 16 3.4 3e+03 -1.1 1.9 2 12 616 626 615 637 0.67 Zinc-finger double domain zf-C2H2_4 PF13894.6 24 ZNF133-203 - 653 3e-49 161.4 101.4 1 16 2.3 2e+03 0.1 0.3 4 14 82 92 82 102 0.68 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF133-203 - 653 3e-49 161.4 101.4 2 16 0.00061 0.55 11.2 0.3 2 23 214 235 213 236 0.91 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF133-203 - 653 3e-49 161.4 101.4 3 16 8.1e-06 0.0073 17.1 0.4 1 23 241 263 241 264 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF133-203 - 653 3e-49 161.4 101.4 4 16 3e-05 0.027 15.3 0.1 2 23 270 291 269 292 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF133-203 - 653 3e-49 161.4 101.4 5 16 6.7e-06 0.006 17.3 0.4 1 23 297 319 297 320 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF133-203 - 653 3e-49 161.4 101.4 6 16 4.8e-06 0.0043 17.8 0.5 1 23 325 347 325 348 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF133-203 - 653 3e-49 161.4 101.4 7 16 5e-05 0.044 14.6 0.1 2 23 354 375 353 376 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF133-203 - 653 3e-49 161.4 101.4 8 16 1.9e-05 0.017 15.9 2.6 1 23 381 403 381 404 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF133-203 - 653 3e-49 161.4 101.4 9 16 4.4e-05 0.04 14.8 1.1 1 23 409 431 409 432 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF133-203 - 653 3e-49 161.4 101.4 10 16 1.9e-05 0.017 15.9 0.7 1 23 437 459 437 460 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF133-203 - 653 3e-49 161.4 101.4 11 16 3.5e-06 0.0032 18.2 0.3 2 23 466 487 465 488 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF133-203 - 653 3e-49 161.4 101.4 12 16 2.5e-05 0.023 15.5 0.2 3 23 495 515 494 516 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF133-203 - 653 3e-49 161.4 101.4 13 16 1.6e-05 0.014 16.2 1.0 1 23 521 543 521 544 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF133-203 - 653 3e-49 161.4 101.4 14 16 2.5e-05 0.022 15.6 0.2 1 23 549 571 549 572 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF133-203 - 653 3e-49 161.4 101.4 15 16 0.0085 7.6 7.7 3.0 2 23 578 599 577 600 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF133-203 - 653 3e-49 161.4 101.4 16 16 6.5e-05 0.058 14.3 1.4 1 22 605 626 605 628 0.93 C2H2-type zinc finger KRAB PF01352.27 42 ZNF133-203 - 653 1.3e-24 85.6 0.2 1 1 2.6e-27 2.3e-24 84.8 0.2 2 42 1 41 1 41 0.98 KRAB box zf-C2H2_jaz PF12171.8 27 ZNF133-203 - 653 5.6e-14 52.0 33.3 1 14 0.21 1.8e+02 2.5 0.0 3 22 214 233 213 233 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF133-203 - 653 5.6e-14 52.0 33.3 2 14 0.044 40 4.7 0.0 2 22 241 261 240 261 0.86 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF133-203 - 653 5.6e-14 52.0 33.3 3 14 0.0062 5.6 7.4 0.0 4 24 271 291 268 292 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF133-203 - 653 5.6e-14 52.0 33.3 4 14 0.019 17 5.8 0.1 2 24 297 319 296 320 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF133-203 - 653 5.6e-14 52.0 33.3 5 14 0.015 13 6.2 0.0 2 24 325 347 324 348 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF133-203 - 653 5.6e-14 52.0 33.3 6 14 0.087 78 3.7 0.1 4 24 355 375 353 376 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF133-203 - 653 5.6e-14 52.0 33.3 7 14 0.028 25 5.3 0.3 2 24 381 403 380 404 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF133-203 - 653 5.6e-14 52.0 33.3 8 14 2.1 1.9e+03 -0.7 0.1 2 24 409 431 408 431 0.86 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF133-203 - 653 5.6e-14 52.0 33.3 9 14 0.62 5.6e+02 1.0 0.0 2 21 437 456 436 457 0.79 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF133-203 - 653 5.6e-14 52.0 33.3 10 14 0.0043 3.8 7.9 0.1 4 24 467 487 464 488 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF133-203 - 653 5.6e-14 52.0 33.3 11 14 0.014 13 6.2 0.1 4 24 495 515 494 516 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF133-203 - 653 5.6e-14 52.0 33.3 12 14 0.051 45 4.5 0.0 2 22 521 541 520 544 0.88 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF133-203 - 653 5.6e-14 52.0 33.3 13 14 0.11 1e+02 3.4 0.0 2 22 549 569 548 569 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF133-203 - 653 5.6e-14 52.0 33.3 14 14 0.038 34 4.9 0.2 2 23 605 626 604 630 0.85 Zinc-finger double-stranded RNA-binding Zn-ribbon_8 PF09723.10 40 ZNF133-203 - 653 2.8e-09 36.9 61.7 1 14 0.057 51 4.1 0.5 8 34 215 248 212 254 0.80 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF133-203 - 653 2.8e-09 36.9 61.7 2 14 0.00099 0.89 9.7 0.8 6 35 241 277 240 282 0.83 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF133-203 - 653 2.8e-09 36.9 61.7 3 14 0.0058 5.2 7.3 2.7 7 34 270 304 269 309 0.79 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF133-203 - 653 2.8e-09 36.9 61.7 4 14 0.064 57 3.9 0.2 6 16 297 307 295 322 0.83 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF133-203 - 653 2.8e-09 36.9 61.7 5 14 3.3e-05 0.029 14.5 0.9 6 33 325 359 324 365 0.90 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF133-203 - 653 2.8e-09 36.9 61.7 6 14 0.033 30 4.8 6.2 6 34 381 416 380 420 0.83 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF133-203 - 653 2.8e-09 36.9 61.7 7 14 0.0027 2.4 8.3 0.7 6 33 409 443 408 444 0.78 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF133-203 - 653 2.8e-09 36.9 61.7 8 14 0.00016 0.14 12.3 0.2 6 34 437 472 436 478 0.86 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF133-203 - 653 2.8e-09 36.9 61.7 9 14 0.0017 1.5 9.0 1.9 7 34 466 500 465 506 0.84 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF133-203 - 653 2.8e-09 36.9 61.7 10 14 0.011 10 6.4 2.9 7 34 494 528 491 533 0.84 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF133-203 - 653 2.8e-09 36.9 61.7 11 14 0.00027 0.25 11.5 1.1 6 33 521 555 520 558 0.84 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF133-203 - 653 2.8e-09 36.9 61.7 12 14 0.016 14 5.9 4.1 6 35 549 586 548 590 0.75 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF133-203 - 653 2.8e-09 36.9 61.7 13 14 0.0029 2.6 8.2 1.8 8 34 579 612 578 619 0.88 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF133-203 - 653 2.8e-09 36.9 61.7 14 14 0.022 20 5.4 0.1 6 18 605 617 604 628 0.76 Zinc ribbon domain zinc_ribbon_15 PF17032.5 86 ZNF133-203 - 653 8.7e-09 36.0 45.3 1 10 0.5 4.5e+02 1.7 0.5 38 72 213 247 204 248 0.86 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF133-203 - 653 8.7e-09 36.0 45.3 2 10 0.0011 1 10.2 0.4 33 77 236 280 228 284 0.85 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF133-203 - 653 8.7e-09 36.0 45.3 3 10 0.001 0.92 10.3 0.7 35 78 294 337 282 340 0.84 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF133-203 - 653 8.7e-09 36.0 45.3 4 10 0.00044 0.4 11.5 1.2 34 75 349 390 339 396 0.86 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF133-203 - 653 8.7e-09 36.0 45.3 5 10 0.01 9.2 7.1 1.8 32 73 431 472 395 479 0.51 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF133-203 - 653 8.7e-09 36.0 45.3 6 10 0.00038 0.34 11.7 0.4 33 79 460 506 453 511 0.87 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF133-203 - 653 8.7e-09 36.0 45.3 7 10 0.00076 0.69 10.7 0.1 32 77 487 532 480 539 0.85 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF133-203 - 653 8.7e-09 36.0 45.3 8 10 0.0027 2.5 8.9 0.4 35 73 518 556 508 567 0.85 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF133-203 - 653 8.7e-09 36.0 45.3 9 10 0.0043 3.9 8.3 2.3 33 74 545 585 536 593 0.83 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF133-203 - 653 8.7e-09 36.0 45.3 10 10 0.045 40 5.0 1.8 33 74 572 613 563 622 0.82 zinc-ribbon family zf-C2H2_11 PF16622.5 29 ZNF133-203 - 653 1.6e-07 31.0 81.8 1 15 0.0043 3.9 7.3 0.4 4 26 212 234 210 235 0.82 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF133-203 - 653 1.6e-07 31.0 81.8 2 15 0.1 94 2.9 0.2 10 23 243 259 241 261 0.82 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF133-203 - 653 1.6e-07 31.0 81.8 3 15 0.093 83 3.1 0.1 7 14 271 278 269 287 0.88 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF133-203 - 653 1.6e-07 31.0 81.8 4 15 0.061 55 3.6 0.1 7 16 299 308 296 316 0.83 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF133-203 - 653 1.6e-07 31.0 81.8 5 15 0.023 21 5.0 0.1 7 23 327 343 324 346 0.88 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF133-203 - 653 1.6e-07 31.0 81.8 6 15 0.036 32 4.4 0.1 3 15 351 363 349 373 0.80 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF133-203 - 653 1.6e-07 31.0 81.8 7 15 0.0039 3.5 7.5 0.8 7 15 383 391 380 401 0.79 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF133-203 - 653 1.6e-07 31.0 81.8 8 15 1.4 1.3e+03 -0.7 0.7 7 24 411 428 409 430 0.74 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF133-203 - 653 1.6e-07 31.0 81.8 9 15 0.0032 2.9 7.8 1.1 7 26 439 458 437 459 0.91 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF133-203 - 653 1.6e-07 31.0 81.8 10 15 0.0012 1.1 9.1 0.2 7 24 467 484 465 486 0.93 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF133-203 - 653 1.6e-07 31.0 81.8 11 15 0.13 1.1e+02 2.6 0.1 7 17 495 505 493 513 0.79 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF133-203 - 653 1.6e-07 31.0 81.8 12 15 0.00019 0.17 11.6 0.8 7 23 523 539 521 541 0.93 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF133-203 - 653 1.6e-07 31.0 81.8 13 15 0.025 23 4.9 0.2 7 20 551 564 548 569 0.77 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF133-203 - 653 1.6e-07 31.0 81.8 14 15 0.24 2.2e+02 1.7 0.7 5 14 577 586 573 597 0.83 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF133-203 - 653 1.6e-07 31.0 81.8 15 15 0.00092 0.82 9.5 2.1 7 24 607 624 605 627 0.94 zinc-finger C2H2-type # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF133-203.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF133-203.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF133-203.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF133-203.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF133-203.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:59:50 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-C2H2 PF00096.26 23 ZNF133-204 - 653 9.9e-82 265.1 103.7 1 15 2.5e-06 0.0023 18.3 0.3 3 23 215 235 213 235 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF133-204 - 653 9.9e-82 265.1 103.7 2 15 4.9e-06 0.0044 17.4 0.2 1 23 241 263 241 263 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF133-204 - 653 9.9e-82 265.1 103.7 3 15 3e-07 0.00027 21.2 0.2 2 23 270 291 269 291 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF133-204 - 653 9.9e-82 265.1 103.7 4 15 4.3e-09 3.9e-06 27.0 0.5 1 23 297 319 297 319 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF133-204 - 653 9.9e-82 265.1 103.7 5 15 1.7e-08 1.5e-05 25.1 0.4 1 23 325 347 325 347 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF133-204 - 653 9.9e-82 265.1 103.7 6 15 1.8e-08 1.6e-05 25.1 0.1 2 23 354 375 353 375 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF133-204 - 653 9.9e-82 265.1 103.7 7 15 1e-07 9.1e-05 22.7 3.5 1 23 381 403 381 403 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF133-204 - 653 9.9e-82 265.1 103.7 8 15 1.5e-08 1.4e-05 25.3 1.5 1 23 409 431 409 431 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF133-204 - 653 9.9e-82 265.1 103.7 9 15 5.1e-08 4.5e-05 23.7 0.7 1 23 437 459 437 459 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF133-204 - 653 9.9e-82 265.1 103.7 10 15 3.5e-10 3.1e-07 30.5 0.4 2 23 466 487 465 487 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF133-204 - 653 9.9e-82 265.1 103.7 11 15 4.1e-09 3.6e-06 27.1 0.2 2 23 494 515 493 515 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF133-204 - 653 9.9e-82 265.1 103.7 12 15 1.3e-07 0.00012 22.4 1.1 1 23 521 543 521 543 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF133-204 - 653 9.9e-82 265.1 103.7 13 15 3.5e-05 0.031 14.7 0.2 1 23 549 571 549 571 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF133-204 - 653 9.9e-82 265.1 103.7 14 15 0.00016 0.15 12.6 3.3 2 23 578 599 577 599 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF133-204 - 653 9.9e-82 265.1 103.7 15 15 2.2e-06 0.0019 18.5 2.6 1 22 605 626 605 630 0.94 Zinc finger, C2H2 type zf-H2C2_2 PF13465.6 26 ZNF133-204 - 653 7.1e-78 253.8 77.9 1 16 9.7 8.7e+03 -2.5 0.1 16 25 214 223 211 224 0.82 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF133-204 - 653 7.1e-78 253.8 77.9 2 16 1.9e-08 1.7e-05 25.0 0.1 1 25 227 251 227 251 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF133-204 - 653 7.1e-78 253.8 77.9 3 16 8.6e-07 0.00077 19.8 0.1 1 25 255 279 255 280 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF133-204 - 653 7.1e-78 253.8 77.9 4 16 9.5e-08 8.5e-05 22.8 0.1 5 25 287 307 284 308 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF133-204 - 653 7.1e-78 253.8 77.9 5 16 6.5e-09 5.8e-06 26.5 0.1 2 25 312 335 311 336 0.90 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF133-204 - 653 7.1e-78 253.8 77.9 6 16 9.2e-05 0.082 13.4 0.0 2 24 340 362 339 363 0.88 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF133-204 - 653 7.1e-78 253.8 77.9 7 16 1.5e-08 1.4e-05 25.3 1.4 1 24 367 390 367 392 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF133-204 - 653 7.1e-78 253.8 77.9 8 16 1.3e-07 0.00012 22.3 0.8 2 25 396 419 395 420 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF133-204 - 653 7.1e-78 253.8 77.9 9 16 1.9e-08 1.7e-05 25.0 0.1 3 24 425 446 424 447 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF133-204 - 653 7.1e-78 253.8 77.9 10 16 5.2e-08 4.7e-05 23.6 0.2 1 25 451 475 451 476 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF133-204 - 653 7.1e-78 253.8 77.9 11 16 3.8e-07 0.00034 20.9 0.0 1 25 479 503 479 504 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF133-204 - 653 7.1e-78 253.8 77.9 12 16 5.1e-09 4.6e-06 26.8 0.3 1 26 507 532 507 532 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF133-204 - 653 7.1e-78 253.8 77.9 13 16 5.3e-07 0.00048 20.4 0.4 2 25 536 559 535 560 0.90 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF133-204 - 653 7.1e-78 253.8 77.9 14 16 0.005 4.5 7.9 0.4 2 25 564 587 563 588 0.89 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF133-204 - 653 7.1e-78 253.8 77.9 15 16 3.8e-08 3.4e-05 24.0 0.6 1 24 591 614 591 616 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF133-204 - 653 7.1e-78 253.8 77.9 16 16 3.4 3e+03 -1.1 1.9 2 12 616 626 615 637 0.67 Zinc-finger double domain zf-C2H2_4 PF13894.6 24 ZNF133-204 - 653 3e-49 161.4 101.4 1 16 2.3 2e+03 0.1 0.3 4 14 82 92 82 102 0.68 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF133-204 - 653 3e-49 161.4 101.4 2 16 0.00061 0.55 11.2 0.3 2 23 214 235 213 236 0.91 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF133-204 - 653 3e-49 161.4 101.4 3 16 8.1e-06 0.0073 17.1 0.4 1 23 241 263 241 264 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF133-204 - 653 3e-49 161.4 101.4 4 16 3e-05 0.027 15.3 0.1 2 23 270 291 269 292 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF133-204 - 653 3e-49 161.4 101.4 5 16 6.7e-06 0.006 17.3 0.4 1 23 297 319 297 320 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF133-204 - 653 3e-49 161.4 101.4 6 16 4.8e-06 0.0043 17.8 0.5 1 23 325 347 325 348 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF133-204 - 653 3e-49 161.4 101.4 7 16 5e-05 0.044 14.6 0.1 2 23 354 375 353 376 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF133-204 - 653 3e-49 161.4 101.4 8 16 1.9e-05 0.017 15.9 2.6 1 23 381 403 381 404 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF133-204 - 653 3e-49 161.4 101.4 9 16 4.4e-05 0.04 14.8 1.1 1 23 409 431 409 432 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF133-204 - 653 3e-49 161.4 101.4 10 16 1.9e-05 0.017 15.9 0.7 1 23 437 459 437 460 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF133-204 - 653 3e-49 161.4 101.4 11 16 3.5e-06 0.0032 18.2 0.3 2 23 466 487 465 488 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF133-204 - 653 3e-49 161.4 101.4 12 16 2.5e-05 0.023 15.5 0.2 3 23 495 515 494 516 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF133-204 - 653 3e-49 161.4 101.4 13 16 1.6e-05 0.014 16.2 1.0 1 23 521 543 521 544 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF133-204 - 653 3e-49 161.4 101.4 14 16 2.5e-05 0.022 15.6 0.2 1 23 549 571 549 572 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF133-204 - 653 3e-49 161.4 101.4 15 16 0.0085 7.6 7.7 3.0 2 23 578 599 577 600 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF133-204 - 653 3e-49 161.4 101.4 16 16 6.5e-05 0.058 14.3 1.4 1 22 605 626 605 628 0.93 C2H2-type zinc finger KRAB PF01352.27 42 ZNF133-204 - 653 1.3e-24 85.6 0.2 1 1 2.6e-27 2.3e-24 84.8 0.2 2 42 1 41 1 41 0.98 KRAB box zf-C2H2_jaz PF12171.8 27 ZNF133-204 - 653 5.6e-14 52.0 33.3 1 14 0.21 1.8e+02 2.5 0.0 3 22 214 233 213 233 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF133-204 - 653 5.6e-14 52.0 33.3 2 14 0.044 40 4.7 0.0 2 22 241 261 240 261 0.86 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF133-204 - 653 5.6e-14 52.0 33.3 3 14 0.0062 5.6 7.4 0.0 4 24 271 291 268 292 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF133-204 - 653 5.6e-14 52.0 33.3 4 14 0.019 17 5.8 0.1 2 24 297 319 296 320 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF133-204 - 653 5.6e-14 52.0 33.3 5 14 0.015 13 6.2 0.0 2 24 325 347 324 348 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF133-204 - 653 5.6e-14 52.0 33.3 6 14 0.087 78 3.7 0.1 4 24 355 375 353 376 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF133-204 - 653 5.6e-14 52.0 33.3 7 14 0.028 25 5.3 0.3 2 24 381 403 380 404 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF133-204 - 653 5.6e-14 52.0 33.3 8 14 2.1 1.9e+03 -0.7 0.1 2 24 409 431 408 431 0.86 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF133-204 - 653 5.6e-14 52.0 33.3 9 14 0.62 5.6e+02 1.0 0.0 2 21 437 456 436 457 0.79 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF133-204 - 653 5.6e-14 52.0 33.3 10 14 0.0043 3.8 7.9 0.1 4 24 467 487 464 488 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF133-204 - 653 5.6e-14 52.0 33.3 11 14 0.014 13 6.2 0.1 4 24 495 515 494 516 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF133-204 - 653 5.6e-14 52.0 33.3 12 14 0.051 45 4.5 0.0 2 22 521 541 520 544 0.88 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF133-204 - 653 5.6e-14 52.0 33.3 13 14 0.11 1e+02 3.4 0.0 2 22 549 569 548 569 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF133-204 - 653 5.6e-14 52.0 33.3 14 14 0.038 34 4.9 0.2 2 23 605 626 604 630 0.85 Zinc-finger double-stranded RNA-binding Zn-ribbon_8 PF09723.10 40 ZNF133-204 - 653 2.8e-09 36.9 61.7 1 14 0.057 51 4.1 0.5 8 34 215 248 212 254 0.80 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF133-204 - 653 2.8e-09 36.9 61.7 2 14 0.00099 0.89 9.7 0.8 6 35 241 277 240 282 0.83 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF133-204 - 653 2.8e-09 36.9 61.7 3 14 0.0058 5.2 7.3 2.7 7 34 270 304 269 309 0.79 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF133-204 - 653 2.8e-09 36.9 61.7 4 14 0.064 57 3.9 0.2 6 16 297 307 295 322 0.83 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF133-204 - 653 2.8e-09 36.9 61.7 5 14 3.3e-05 0.029 14.5 0.9 6 33 325 359 324 365 0.90 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF133-204 - 653 2.8e-09 36.9 61.7 6 14 0.033 30 4.8 6.2 6 34 381 416 380 420 0.83 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF133-204 - 653 2.8e-09 36.9 61.7 7 14 0.0027 2.4 8.3 0.7 6 33 409 443 408 444 0.78 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF133-204 - 653 2.8e-09 36.9 61.7 8 14 0.00016 0.14 12.3 0.2 6 34 437 472 436 478 0.86 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF133-204 - 653 2.8e-09 36.9 61.7 9 14 0.0017 1.5 9.0 1.9 7 34 466 500 465 506 0.84 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF133-204 - 653 2.8e-09 36.9 61.7 10 14 0.011 10 6.4 2.9 7 34 494 528 491 533 0.84 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF133-204 - 653 2.8e-09 36.9 61.7 11 14 0.00027 0.25 11.5 1.1 6 33 521 555 520 558 0.84 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF133-204 - 653 2.8e-09 36.9 61.7 12 14 0.016 14 5.9 4.1 6 35 549 586 548 590 0.75 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF133-204 - 653 2.8e-09 36.9 61.7 13 14 0.0029 2.6 8.2 1.8 8 34 579 612 578 619 0.88 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF133-204 - 653 2.8e-09 36.9 61.7 14 14 0.022 20 5.4 0.1 6 18 605 617 604 628 0.76 Zinc ribbon domain zinc_ribbon_15 PF17032.5 86 ZNF133-204 - 653 8.7e-09 36.0 45.3 1 10 0.5 4.5e+02 1.7 0.5 38 72 213 247 204 248 0.86 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF133-204 - 653 8.7e-09 36.0 45.3 2 10 0.0011 1 10.2 0.4 33 77 236 280 228 284 0.85 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF133-204 - 653 8.7e-09 36.0 45.3 3 10 0.001 0.92 10.3 0.7 35 78 294 337 282 340 0.84 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF133-204 - 653 8.7e-09 36.0 45.3 4 10 0.00044 0.4 11.5 1.2 34 75 349 390 339 396 0.86 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF133-204 - 653 8.7e-09 36.0 45.3 5 10 0.01 9.2 7.1 1.8 32 73 431 472 395 479 0.51 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF133-204 - 653 8.7e-09 36.0 45.3 6 10 0.00038 0.34 11.7 0.4 33 79 460 506 453 511 0.87 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF133-204 - 653 8.7e-09 36.0 45.3 7 10 0.00076 0.69 10.7 0.1 32 77 487 532 480 539 0.85 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF133-204 - 653 8.7e-09 36.0 45.3 8 10 0.0027 2.5 8.9 0.4 35 73 518 556 508 567 0.85 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF133-204 - 653 8.7e-09 36.0 45.3 9 10 0.0043 3.9 8.3 2.3 33 74 545 585 536 593 0.83 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF133-204 - 653 8.7e-09 36.0 45.3 10 10 0.045 40 5.0 1.8 33 74 572 613 563 622 0.82 zinc-ribbon family zf-C2H2_11 PF16622.5 29 ZNF133-204 - 653 1.6e-07 31.0 81.8 1 15 0.0043 3.9 7.3 0.4 4 26 212 234 210 235 0.82 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF133-204 - 653 1.6e-07 31.0 81.8 2 15 0.1 94 2.9 0.2 10 23 243 259 241 261 0.82 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF133-204 - 653 1.6e-07 31.0 81.8 3 15 0.093 83 3.1 0.1 7 14 271 278 269 287 0.88 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF133-204 - 653 1.6e-07 31.0 81.8 4 15 0.061 55 3.6 0.1 7 16 299 308 296 316 0.83 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF133-204 - 653 1.6e-07 31.0 81.8 5 15 0.023 21 5.0 0.1 7 23 327 343 324 346 0.88 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF133-204 - 653 1.6e-07 31.0 81.8 6 15 0.036 32 4.4 0.1 3 15 351 363 349 373 0.80 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF133-204 - 653 1.6e-07 31.0 81.8 7 15 0.0039 3.5 7.5 0.8 7 15 383 391 380 401 0.79 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF133-204 - 653 1.6e-07 31.0 81.8 8 15 1.4 1.3e+03 -0.7 0.7 7 24 411 428 409 430 0.74 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF133-204 - 653 1.6e-07 31.0 81.8 9 15 0.0032 2.9 7.8 1.1 7 26 439 458 437 459 0.91 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF133-204 - 653 1.6e-07 31.0 81.8 10 15 0.0012 1.1 9.1 0.2 7 24 467 484 465 486 0.93 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF133-204 - 653 1.6e-07 31.0 81.8 11 15 0.13 1.1e+02 2.6 0.1 7 17 495 505 493 513 0.79 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF133-204 - 653 1.6e-07 31.0 81.8 12 15 0.00019 0.17 11.6 0.8 7 23 523 539 521 541 0.93 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF133-204 - 653 1.6e-07 31.0 81.8 13 15 0.025 23 4.9 0.2 7 20 551 564 548 569 0.77 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF133-204 - 653 1.6e-07 31.0 81.8 14 15 0.24 2.2e+02 1.7 0.7 5 14 577 586 573 597 0.83 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF133-204 - 653 1.6e-07 31.0 81.8 15 15 0.00092 0.82 9.5 2.1 7 24 607 624 605 627 0.94 zinc-finger C2H2-type # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF133-204.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF133-204.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF133-204.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF133-204.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF133-204.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:59:50 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-C2H2 PF00096.26 23 ZNF133-205 - 654 1e-81 265.1 103.7 1 15 2.5e-06 0.0023 18.3 0.3 3 23 216 236 214 236 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF133-205 - 654 1e-81 265.1 103.7 2 15 4.9e-06 0.0044 17.4 0.2 1 23 242 264 242 264 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF133-205 - 654 1e-81 265.1 103.7 3 15 3e-07 0.00027 21.2 0.2 2 23 271 292 270 292 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF133-205 - 654 1e-81 265.1 103.7 4 15 4.3e-09 3.9e-06 27.0 0.5 1 23 298 320 298 320 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF133-205 - 654 1e-81 265.1 103.7 5 15 1.7e-08 1.5e-05 25.1 0.4 1 23 326 348 326 348 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF133-205 - 654 1e-81 265.1 103.7 6 15 1.8e-08 1.6e-05 25.1 0.1 2 23 355 376 354 376 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF133-205 - 654 1e-81 265.1 103.7 7 15 1e-07 9.1e-05 22.7 3.5 1 23 382 404 382 404 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF133-205 - 654 1e-81 265.1 103.7 8 15 1.5e-08 1.4e-05 25.3 1.5 1 23 410 432 410 432 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF133-205 - 654 1e-81 265.1 103.7 9 15 5.1e-08 4.5e-05 23.7 0.7 1 23 438 460 438 460 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF133-205 - 654 1e-81 265.1 103.7 10 15 3.5e-10 3.1e-07 30.5 0.4 2 23 467 488 466 488 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF133-205 - 654 1e-81 265.1 103.7 11 15 4.1e-09 3.7e-06 27.1 0.2 2 23 495 516 494 516 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF133-205 - 654 1e-81 265.1 103.7 12 15 1.3e-07 0.00012 22.4 1.1 1 23 522 544 522 544 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF133-205 - 654 1e-81 265.1 103.7 13 15 3.5e-05 0.031 14.7 0.2 1 23 550 572 550 572 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF133-205 - 654 1e-81 265.1 103.7 14 15 0.00016 0.15 12.6 3.3 2 23 579 600 578 600 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF133-205 - 654 1e-81 265.1 103.7 15 15 2.2e-06 0.0019 18.5 2.6 1 22 606 627 606 631 0.94 Zinc finger, C2H2 type zf-H2C2_2 PF13465.6 26 ZNF133-205 - 654 7.3e-78 253.8 77.9 1 16 9.8 8.8e+03 -2.5 0.1 16 25 215 224 212 225 0.82 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF133-205 - 654 7.3e-78 253.8 77.9 2 16 2e-08 1.7e-05 25.0 0.1 1 25 228 252 228 252 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF133-205 - 654 7.3e-78 253.8 77.9 3 16 8.6e-07 0.00077 19.8 0.1 1 25 256 280 256 281 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF133-205 - 654 7.3e-78 253.8 77.9 4 16 9.5e-08 8.6e-05 22.8 0.1 5 25 288 308 285 309 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF133-205 - 654 7.3e-78 253.8 77.9 5 16 6.5e-09 5.8e-06 26.5 0.1 2 25 313 336 312 337 0.90 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF133-205 - 654 7.3e-78 253.8 77.9 6 16 9.2e-05 0.083 13.4 0.0 2 24 341 363 340 364 0.88 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF133-205 - 654 7.3e-78 253.8 77.9 7 16 1.5e-08 1.4e-05 25.3 1.4 1 24 368 391 368 393 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF133-205 - 654 7.3e-78 253.8 77.9 8 16 1.3e-07 0.00012 22.3 0.8 2 25 397 420 396 421 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF133-205 - 654 7.3e-78 253.8 77.9 9 16 1.9e-08 1.7e-05 25.0 0.1 3 24 426 447 425 448 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF133-205 - 654 7.3e-78 253.8 77.9 10 16 5.2e-08 4.7e-05 23.6 0.2 1 25 452 476 452 477 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF133-205 - 654 7.3e-78 253.8 77.9 11 16 3.8e-07 0.00034 20.9 0.0 1 25 480 504 480 505 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF133-205 - 654 7.3e-78 253.8 77.9 12 16 5.1e-09 4.6e-06 26.8 0.3 1 26 508 533 508 533 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF133-205 - 654 7.3e-78 253.8 77.9 13 16 5.3e-07 0.00048 20.4 0.4 2 25 537 560 536 561 0.90 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF133-205 - 654 7.3e-78 253.8 77.9 14 16 0.005 4.5 7.9 0.4 2 25 565 588 564 589 0.89 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF133-205 - 654 7.3e-78 253.8 77.9 15 16 3.9e-08 3.5e-05 24.0 0.6 1 24 592 615 592 617 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF133-205 - 654 7.3e-78 253.8 77.9 16 16 3.4 3e+03 -1.1 1.9 2 12 617 627 616 638 0.67 Zinc-finger double domain zf-C2H2_4 PF13894.6 24 ZNF133-205 - 654 3.1e-49 161.4 101.4 1 16 2.3 2e+03 0.1 0.3 4 14 83 93 83 103 0.68 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF133-205 - 654 3.1e-49 161.4 101.4 2 16 0.00061 0.55 11.2 0.3 2 23 215 236 214 237 0.91 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF133-205 - 654 3.1e-49 161.4 101.4 3 16 8.1e-06 0.0073 17.1 0.4 1 23 242 264 242 265 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF133-205 - 654 3.1e-49 161.4 101.4 4 16 3e-05 0.027 15.3 0.1 2 23 271 292 270 293 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF133-205 - 654 3.1e-49 161.4 101.4 5 16 6.7e-06 0.006 17.3 0.4 1 23 298 320 298 321 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF133-205 - 654 3.1e-49 161.4 101.4 6 16 4.9e-06 0.0044 17.8 0.5 1 23 326 348 326 349 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF133-205 - 654 3.1e-49 161.4 101.4 7 16 5e-05 0.045 14.6 0.1 2 23 355 376 354 377 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF133-205 - 654 3.1e-49 161.4 101.4 8 16 1.9e-05 0.017 15.9 2.6 1 23 382 404 382 405 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF133-205 - 654 3.1e-49 161.4 101.4 9 16 4.5e-05 0.04 14.8 1.1 1 23 410 432 410 433 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF133-205 - 654 3.1e-49 161.4 101.4 10 16 1.9e-05 0.017 15.9 0.7 1 23 438 460 438 461 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF133-205 - 654 3.1e-49 161.4 101.4 11 16 3.5e-06 0.0032 18.2 0.3 2 23 467 488 466 489 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF133-205 - 654 3.1e-49 161.4 101.4 12 16 2.6e-05 0.023 15.5 0.2 3 23 496 516 495 517 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF133-205 - 654 3.1e-49 161.4 101.4 13 16 1.6e-05 0.014 16.2 1.0 1 23 522 544 522 545 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF133-205 - 654 3.1e-49 161.4 101.4 14 16 2.5e-05 0.022 15.6 0.2 1 23 550 572 550 573 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF133-205 - 654 3.1e-49 161.4 101.4 15 16 0.0085 7.6 7.7 3.0 2 23 579 600 578 601 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF133-205 - 654 3.1e-49 161.4 101.4 16 16 6.5e-05 0.058 14.3 1.4 1 22 606 627 606 629 0.93 C2H2-type zinc finger KRAB PF01352.27 42 ZNF133-205 - 654 1.3e-24 85.6 0.2 1 1 2.6e-27 2.3e-24 84.8 0.2 2 42 1 41 1 41 0.98 KRAB box zf-C2H2_jaz PF12171.8 27 ZNF133-205 - 654 5.7e-14 52.0 33.3 1 14 0.21 1.8e+02 2.5 0.0 3 22 215 234 214 234 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF133-205 - 654 5.7e-14 52.0 33.3 2 14 0.044 40 4.7 0.0 2 22 242 262 241 262 0.86 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF133-205 - 654 5.7e-14 52.0 33.3 3 14 0.0062 5.6 7.4 0.0 4 24 272 292 269 293 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF133-205 - 654 5.7e-14 52.0 33.3 4 14 0.019 17 5.8 0.1 2 24 298 320 297 321 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF133-205 - 654 5.7e-14 52.0 33.3 5 14 0.015 13 6.2 0.0 2 24 326 348 325 349 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF133-205 - 654 5.7e-14 52.0 33.3 6 14 0.087 78 3.7 0.1 4 24 356 376 354 377 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF133-205 - 654 5.7e-14 52.0 33.3 7 14 0.028 25 5.3 0.3 2 24 382 404 381 405 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF133-205 - 654 5.7e-14 52.0 33.3 8 14 2.1 1.9e+03 -0.7 0.1 2 24 410 432 409 432 0.86 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF133-205 - 654 5.7e-14 52.0 33.3 9 14 0.62 5.6e+02 1.0 0.0 2 21 438 457 437 458 0.79 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF133-205 - 654 5.7e-14 52.0 33.3 10 14 0.0043 3.8 7.9 0.1 4 24 468 488 465 489 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF133-205 - 654 5.7e-14 52.0 33.3 11 14 0.015 13 6.2 0.1 4 24 496 516 495 517 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF133-205 - 654 5.7e-14 52.0 33.3 12 14 0.051 45 4.5 0.0 2 22 522 542 521 545 0.88 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF133-205 - 654 5.7e-14 52.0 33.3 13 14 0.11 1e+02 3.4 0.0 2 22 550 570 549 570 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF133-205 - 654 5.7e-14 52.0 33.3 14 14 0.038 34 4.9 0.2 2 23 606 627 605 631 0.85 Zinc-finger double-stranded RNA-binding Zn-ribbon_8 PF09723.10 40 ZNF133-205 - 654 2.9e-09 36.9 61.7 1 14 0.057 51 4.1 0.5 8 34 216 249 213 255 0.80 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF133-205 - 654 2.9e-09 36.9 61.7 2 14 0.00099 0.89 9.7 0.8 6 35 242 278 241 283 0.83 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF133-205 - 654 2.9e-09 36.9 61.7 3 14 0.0059 5.2 7.3 2.7 7 34 271 305 270 310 0.79 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF133-205 - 654 2.9e-09 36.9 61.7 4 14 0.064 57 3.9 0.2 6 16 298 308 296 323 0.83 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF133-205 - 654 2.9e-09 36.9 61.7 5 14 3.3e-05 0.029 14.5 0.9 6 33 326 360 325 366 0.90 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF133-205 - 654 2.9e-09 36.9 61.7 6 14 0.033 30 4.8 6.2 6 34 382 417 381 421 0.83 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF133-205 - 654 2.9e-09 36.9 61.7 7 14 0.0027 2.4 8.3 0.7 6 33 410 444 409 445 0.78 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF133-205 - 654 2.9e-09 36.9 61.7 8 14 0.00016 0.14 12.3 0.2 6 34 438 473 437 479 0.86 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF133-205 - 654 2.9e-09 36.9 61.7 9 14 0.0017 1.5 9.0 1.9 7 34 467 501 466 507 0.84 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF133-205 - 654 2.9e-09 36.9 61.7 10 14 0.011 10 6.4 2.9 7 34 495 529 492 534 0.84 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF133-205 - 654 2.9e-09 36.9 61.7 11 14 0.00027 0.25 11.5 1.1 6 33 522 556 521 559 0.84 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF133-205 - 654 2.9e-09 36.9 61.7 12 14 0.016 14 5.9 4.1 6 35 550 587 549 591 0.75 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF133-205 - 654 2.9e-09 36.9 61.7 13 14 0.0029 2.6 8.2 1.8 8 34 580 613 579 620 0.88 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF133-205 - 654 2.9e-09 36.9 61.7 14 14 0.022 20 5.4 0.1 6 18 606 618 605 629 0.76 Zinc ribbon domain zinc_ribbon_15 PF17032.5 86 ZNF133-205 - 654 7.7e-09 36.2 45.1 1 7 0.0022 2 9.2 1.6 32 77 236 281 214 288 0.86 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF133-205 - 654 7.7e-09 36.2 45.1 2 7 0.00096 0.86 10.4 0.7 35 78 295 338 284 344 0.84 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF133-205 - 654 7.7e-09 36.2 45.1 3 7 0.00046 0.41 11.4 1.2 34 75 350 391 341 398 0.86 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF133-205 - 654 7.7e-09 36.2 45.1 4 7 0.0077 6.9 7.5 1.5 32 74 432 474 394 481 0.53 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF133-205 - 654 7.7e-09 36.2 45.1 5 7 0.00039 0.35 11.7 0.4 33 79 461 507 455 512 0.87 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF133-205 - 654 7.7e-09 36.2 45.1 6 7 0.00078 0.7 10.7 0.2 31 77 487 533 480 537 0.85 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF133-205 - 654 7.7e-09 36.2 45.1 7 7 0.11 1e+02 3.8 7.6 33 73 546 585 509 622 0.75 zinc-ribbon family zf-C2H2_11 PF16622.5 29 ZNF133-205 - 654 1.6e-07 30.9 81.8 1 15 0.0044 3.9 7.3 0.4 4 26 213 235 211 236 0.82 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF133-205 - 654 1.6e-07 30.9 81.8 2 15 0.1 94 2.9 0.2 10 23 244 260 242 262 0.82 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF133-205 - 654 1.6e-07 30.9 81.8 3 15 0.093 83 3.1 0.1 7 14 272 279 270 288 0.88 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF133-205 - 654 1.6e-07 30.9 81.8 4 15 0.061 55 3.6 0.1 7 16 300 309 297 317 0.83 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF133-205 - 654 1.6e-07 30.9 81.8 5 15 0.023 21 5.0 0.1 7 23 328 344 325 347 0.88 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF133-205 - 654 1.6e-07 30.9 81.8 6 15 0.036 33 4.4 0.1 3 15 352 364 350 374 0.80 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF133-205 - 654 1.6e-07 30.9 81.8 7 15 0.0039 3.5 7.5 0.8 7 15 384 392 381 402 0.79 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF133-205 - 654 1.6e-07 30.9 81.8 8 15 1.4 1.3e+03 -0.7 0.7 7 24 412 429 410 431 0.74 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF133-205 - 654 1.6e-07 30.9 81.8 9 15 0.0032 2.9 7.8 1.1 7 26 440 459 438 460 0.91 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF133-205 - 654 1.6e-07 30.9 81.8 10 15 0.0012 1.1 9.1 0.2 7 24 468 485 466 487 0.93 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF133-205 - 654 1.6e-07 30.9 81.8 11 15 0.13 1.1e+02 2.6 0.1 7 17 496 506 494 514 0.79 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF133-205 - 654 1.6e-07 30.9 81.8 12 15 0.00019 0.17 11.6 0.8 7 23 524 540 522 542 0.93 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF133-205 - 654 1.6e-07 30.9 81.8 13 15 0.025 23 4.9 0.2 7 20 552 565 549 570 0.77 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF133-205 - 654 1.6e-07 30.9 81.8 14 15 0.24 2.2e+02 1.7 0.7 5 14 578 587 574 598 0.83 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF133-205 - 654 1.6e-07 30.9 81.8 15 15 0.00092 0.83 9.5 2.1 7 24 608 625 606 628 0.94 zinc-finger C2H2-type ADK_lid PF05191.14 36 ZNF133-205 - 654 4.8e-07 29.7 51.5 1 12 0.43 3.8e+02 1.2 0.4 4 27 216 247 214 254 0.55 Adenylate kinase, active site lid ADK_lid PF05191.14 36 ZNF133-205 - 654 4.8e-07 29.7 51.5 2 12 0.00045 0.41 10.7 1.0 3 33 271 309 270 311 0.77 Adenylate kinase, active site lid ADK_lid PF05191.14 36 ZNF133-205 - 654 4.8e-07 29.7 51.5 3 12 0.0013 1.2 9.2 0.8 3 33 299 337 298 339 0.70 Adenylate kinase, active site lid ADK_lid PF05191.14 36 ZNF133-205 - 654 4.8e-07 29.7 51.5 4 12 0.034 30 4.7 1.1 3 28 327 360 325 367 0.69 Adenylate kinase, active site lid ADK_lid PF05191.14 36 ZNF133-205 - 654 4.8e-07 29.7 51.5 5 12 0.037 33 4.6 1.3 3 34 355 394 354 395 0.67 Adenylate kinase, active site lid ADK_lid PF05191.14 36 ZNF133-205 - 654 4.8e-07 29.7 51.5 6 12 0.0073 6.5 6.8 2.1 4 33 384 421 382 423 0.77 Adenylate kinase, active site lid ADK_lid PF05191.14 36 ZNF133-205 - 654 4.8e-07 29.7 51.5 7 12 0.054 48 4.0 2.3 3 28 411 444 410 451 0.72 Adenylate kinase, active site lid ADK_lid PF05191.14 36 ZNF133-205 - 654 4.8e-07 29.7 51.5 8 12 0.094 85 3.3 0.2 3 14 439 450 438 460 0.80 Adenylate kinase, active site lid ADK_lid PF05191.14 36 ZNF133-205 - 654 4.8e-07 29.7 51.5 9 12 2.1e-05 0.019 15.0 0.5 3 33 467 505 466 507 0.69 Adenylate kinase, active site lid ADK_lid PF05191.14 36 ZNF133-205 - 654 4.8e-07 29.7 51.5 10 12 0.015 13 5.8 2.7 3 28 523 556 522 591 0.63 Adenylate kinase, active site lid ADK_lid PF05191.14 36 ZNF133-205 - 654 4.8e-07 29.7 51.5 11 12 0.65 5.8e+02 0.6 0.2 3 11 579 587 578 598 0.72 Adenylate kinase, active site lid ADK_lid PF05191.14 36 ZNF133-205 - 654 4.8e-07 29.7 51.5 12 12 0.01 9.3 6.3 0.3 3 14 607 618 606 638 0.80 Adenylate kinase, active site lid # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF133-205.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF133-205.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF133-205.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF133-205.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF133-205.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:59:51 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-C2H2 PF00096.26 23 ZNF133-206 - 591 2e-82 267.3 103.7 1 16 9.9 8.4e+03 -2.4 0.1 5 13 21 29 20 36 0.83 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF133-206 - 591 2e-82 267.3 103.7 2 16 2.4e-06 0.002 18.5 0.3 3 23 153 173 151 173 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF133-206 - 591 2e-82 267.3 103.7 3 16 4.5e-06 0.0039 17.6 0.2 1 23 179 201 179 201 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF133-206 - 591 2e-82 267.3 103.7 4 16 2.8e-07 0.00024 21.4 0.2 2 23 208 229 207 229 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF133-206 - 591 2e-82 267.3 103.7 5 16 4e-09 3.4e-06 27.2 0.5 1 23 235 257 235 257 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF133-206 - 591 2e-82 267.3 103.7 6 16 1.6e-08 1.4e-05 25.3 0.4 1 23 263 285 263 285 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF133-206 - 591 2e-82 267.3 103.7 7 16 1.7e-08 1.4e-05 25.2 0.1 2 23 292 313 291 313 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF133-206 - 591 2e-82 267.3 103.7 8 16 9.5e-08 8.1e-05 22.9 3.5 1 23 319 341 319 341 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF133-206 - 591 2e-82 267.3 103.7 9 16 1.4e-08 1.2e-05 25.5 1.5 1 23 347 369 347 369 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF133-206 - 591 2e-82 267.3 103.7 10 16 4.7e-08 4e-05 23.8 0.7 1 23 375 397 375 397 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF133-206 - 591 2e-82 267.3 103.7 11 16 3.3e-10 2.8e-07 30.6 0.4 2 23 404 425 403 425 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF133-206 - 591 2e-82 267.3 103.7 12 16 3.8e-09 3.2e-06 27.3 0.2 2 23 432 453 431 453 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF133-206 - 591 2e-82 267.3 103.7 13 16 1.2e-07 0.0001 22.5 1.1 1 23 459 481 459 481 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF133-206 - 591 2e-82 267.3 103.7 14 16 3.2e-05 0.028 14.9 0.2 1 23 487 509 487 509 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF133-206 - 591 2e-82 267.3 103.7 15 16 0.00015 0.13 12.8 3.3 2 23 516 537 515 537 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF133-206 - 591 2e-82 267.3 103.7 16 16 2e-06 0.0017 18.7 2.6 1 22 543 564 543 568 0.94 Zinc finger, C2H2 type zf-H2C2_2 PF13465.6 26 ZNF133-206 - 591 1.6e-78 255.9 78.1 1 16 9.2 7.8e+03 -2.4 0.1 16 25 152 161 149 162 0.82 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF133-206 - 591 1.6e-78 255.9 78.1 2 16 1.8e-08 1.6e-05 25.1 0.1 1 25 165 189 165 189 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF133-206 - 591 1.6e-78 255.9 78.1 3 16 8e-07 0.00069 19.9 0.1 1 25 193 217 193 218 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF133-206 - 591 1.6e-78 255.9 78.1 4 16 8.9e-08 7.6e-05 23.0 0.1 5 25 225 245 222 246 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF133-206 - 591 1.6e-78 255.9 78.1 5 16 6.1e-09 5.2e-06 26.6 0.1 2 25 250 273 249 274 0.90 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF133-206 - 591 1.6e-78 255.9 78.1 6 16 8.6e-05 0.073 13.5 0.0 2 24 278 300 277 301 0.88 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF133-206 - 591 1.6e-78 255.9 78.1 7 16 1.4e-08 1.2e-05 25.5 1.4 1 24 305 328 305 330 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF133-206 - 591 1.6e-78 255.9 78.1 8 16 1.3e-07 0.00011 22.5 0.8 2 25 334 357 333 358 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF133-206 - 591 1.6e-78 255.9 78.1 9 16 1.8e-08 1.5e-05 25.2 0.1 3 24 363 384 362 385 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF133-206 - 591 1.6e-78 255.9 78.1 10 16 4.9e-08 4.2e-05 23.8 0.2 1 25 389 413 389 414 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF133-206 - 591 1.6e-78 255.9 78.1 11 16 3.5e-07 0.0003 21.1 0.0 1 25 417 441 417 442 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF133-206 - 591 1.6e-78 255.9 78.1 12 16 4.8e-09 4.1e-06 27.0 0.3 1 26 445 470 445 470 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF133-206 - 591 1.6e-78 255.9 78.1 13 16 5e-07 0.00042 20.6 0.4 2 25 474 497 473 498 0.90 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF133-206 - 591 1.6e-78 255.9 78.1 14 16 0.0047 4 8.0 0.4 2 25 502 525 501 526 0.89 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF133-206 - 591 1.6e-78 255.9 78.1 15 16 3.5e-08 3e-05 24.2 0.5 1 24 529 552 529 554 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF133-206 - 591 1.6e-78 255.9 78.1 16 16 3.8 3.3e+03 -1.2 2.2 2 12 554 564 553 575 0.67 Zinc-finger double domain zf-C2H2_4 PF13894.6 24 ZNF133-206 - 591 5e-50 163.8 101.4 1 16 2.1 1.8e+03 0.3 0.3 4 14 20 30 20 40 0.68 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF133-206 - 591 5e-50 163.8 101.4 2 16 0.00057 0.49 11.4 0.3 2 23 152 173 151 174 0.91 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF133-206 - 591 5e-50 163.8 101.4 3 16 7.5e-06 0.0064 17.2 0.4 1 23 179 201 179 202 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF133-206 - 591 5e-50 163.8 101.4 4 16 2.8e-05 0.024 15.4 0.1 2 23 208 229 207 230 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF133-206 - 591 5e-50 163.8 101.4 5 16 6.3e-06 0.0053 17.5 0.4 1 23 235 257 235 258 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF133-206 - 591 5e-50 163.8 101.4 6 16 4.5e-06 0.0039 17.9 0.5 1 23 263 285 263 286 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF133-206 - 591 5e-50 163.8 101.4 7 16 4.6e-05 0.04 14.8 0.1 2 23 292 313 291 314 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF133-206 - 591 5e-50 163.8 101.4 8 16 1.8e-05 0.015 16.0 2.6 1 23 319 341 319 342 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF133-206 - 591 5e-50 163.8 101.4 9 16 4.1e-05 0.035 14.9 1.1 1 23 347 369 347 370 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF133-206 - 591 5e-50 163.8 101.4 10 16 1.7e-05 0.015 16.1 0.7 1 23 375 397 375 398 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF133-206 - 591 5e-50 163.8 101.4 11 16 3.3e-06 0.0028 18.3 0.3 2 23 404 425 403 426 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF133-206 - 591 5e-50 163.8 101.4 12 16 2.4e-05 0.02 15.7 0.2 3 23 433 453 432 454 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF133-206 - 591 5e-50 163.8 101.4 13 16 1.5e-05 0.013 16.3 1.0 1 23 459 481 459 482 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF133-206 - 591 5e-50 163.8 101.4 14 16 2.3e-05 0.02 15.7 0.2 1 23 487 509 487 510 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF133-206 - 591 5e-50 163.8 101.4 15 16 0.0079 6.7 7.8 3.0 2 23 516 537 515 538 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF133-206 - 591 5e-50 163.8 101.4 16 16 6e-05 0.051 14.4 1.4 1 22 543 564 543 566 0.93 C2H2-type zinc finger zf-C2H2_jaz PF12171.8 27 ZNF133-206 - 591 1.2e-14 54.1 33.3 1 14 0.19 1.6e+02 2.7 0.0 3 22 152 171 151 171 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF133-206 - 591 1.2e-14 54.1 33.3 2 14 0.041 35 4.8 0.0 2 22 179 199 178 199 0.86 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF133-206 - 591 1.2e-14 54.1 33.3 3 14 0.0058 4.9 7.5 0.0 4 24 209 229 206 230 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF133-206 - 591 1.2e-14 54.1 33.3 4 14 0.018 15 6.0 0.1 2 24 235 257 234 258 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF133-206 - 591 1.2e-14 54.1 33.3 5 14 0.014 12 6.3 0.0 2 24 263 285 262 286 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF133-206 - 591 1.2e-14 54.1 33.3 6 14 0.081 69 3.9 0.1 4 24 293 313 291 314 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF133-206 - 591 1.2e-14 54.1 33.3 7 14 0.026 22 5.5 0.3 2 24 319 341 318 342 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF133-206 - 591 1.2e-14 54.1 33.3 8 14 2 1.7e+03 -0.5 0.1 2 24 347 369 346 369 0.87 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF133-206 - 591 1.2e-14 54.1 33.3 9 14 0.58 5e+02 1.2 0.0 2 21 375 394 374 395 0.79 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF133-206 - 591 1.2e-14 54.1 33.3 10 14 0.004 3.4 8.1 0.1 4 24 405 425 402 426 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF133-206 - 591 1.2e-14 54.1 33.3 11 14 0.014 12 6.4 0.1 4 24 433 453 432 454 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF133-206 - 591 1.2e-14 54.1 33.3 12 14 0.047 40 4.6 0.0 2 22 459 479 458 482 0.88 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF133-206 - 591 1.2e-14 54.1 33.3 13 14 0.11 91 3.5 0.0 2 22 487 507 486 507 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF133-206 - 591 1.2e-14 54.1 33.3 14 14 0.035 30 5.1 0.2 2 23 543 564 542 568 0.85 Zinc-finger double-stranded RNA-binding Zn-ribbon_8 PF09723.10 40 ZNF133-206 - 591 1.1e-09 38.3 61.8 1 14 0.058 50 4.1 0.6 8 34 153 186 150 192 0.80 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF133-206 - 591 1.1e-09 38.3 61.8 2 14 0.00091 0.77 9.9 0.7 6 35 179 215 178 220 0.83 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF133-206 - 591 1.1e-09 38.3 61.8 3 14 0.0048 4.1 7.6 2.6 7 34 208 242 207 248 0.79 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF133-206 - 591 1.1e-09 38.3 61.8 4 14 0.059 51 4.1 0.2 6 16 235 245 234 261 0.82 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF133-206 - 591 1.1e-09 38.3 61.8 5 14 2.9e-05 0.025 14.7 0.8 6 33 263 297 262 303 0.90 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF133-206 - 591 1.1e-09 38.3 61.8 6 14 0.026 22 5.2 6.1 6 34 319 354 318 359 0.83 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF133-206 - 591 1.1e-09 38.3 61.8 7 14 0.0017 1.4 9.0 0.5 6 34 347 382 345 385 0.80 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF133-206 - 591 1.1e-09 38.3 61.8 8 14 0.00016 0.13 12.4 0.2 6 34 375 410 374 415 0.86 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF133-206 - 591 1.1e-09 38.3 61.8 9 14 0.0014 1.2 9.4 1.7 7 34 404 438 403 444 0.84 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF133-206 - 591 1.1e-09 38.3 61.8 10 14 0.016 14 5.9 2.9 7 33 432 465 429 466 0.87 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF133-206 - 591 1.1e-09 38.3 61.8 11 14 0.00028 0.24 11.6 1.3 6 33 459 493 458 496 0.84 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF133-206 - 591 1.1e-09 38.3 61.8 12 14 0.012 10 6.4 3.9 6 35 487 524 486 528 0.75 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF133-206 - 591 1.1e-09 38.3 61.8 13 14 0.0032 2.7 8.2 2.0 8 34 517 550 516 557 0.88 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF133-206 - 591 1.1e-09 38.3 61.8 14 14 0.021 18 5.6 0.1 6 18 543 555 542 566 0.76 Zinc ribbon domain zinc_ribbon_15 PF17032.5 86 ZNF133-206 - 591 5.3e-09 36.7 45.8 1 9 0.0027 2.3 9.0 1.9 32 77 173 218 151 222 0.86 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF133-206 - 591 5.3e-09 36.7 45.8 2 9 0.001 0.85 10.4 0.8 35 78 232 275 220 278 0.84 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF133-206 - 591 5.3e-09 36.7 45.8 3 9 0.00045 0.38 11.5 1.3 34 75 287 328 278 334 0.86 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF133-206 - 591 5.3e-09 36.7 45.8 4 9 0.007 5.9 7.7 1.5 32 74 369 411 331 418 0.53 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF133-206 - 591 5.3e-09 36.7 45.8 5 9 0.00039 0.33 11.7 0.4 33 79 398 444 393 447 0.87 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF133-206 - 591 5.3e-09 36.7 45.8 6 9 0.00078 0.67 10.7 0.2 32 76 425 469 418 473 0.85 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF133-206 - 591 5.3e-09 36.7 45.8 7 9 0.0026 2.2 9.1 0.4 35 73 456 494 446 502 0.85 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF133-206 - 591 5.3e-09 36.7 45.8 8 9 0.0039 3.4 8.5 2.3 33 74 483 523 474 530 0.83 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF133-206 - 591 5.3e-09 36.7 45.8 9 9 0.043 37 5.2 1.8 33 74 510 551 501 560 0.82 zinc-ribbon family zf-C2H2_11 PF16622.5 29 ZNF133-206 - 591 3.2e-08 33.2 81.8 1 15 0.0041 3.5 7.5 0.4 4 26 150 172 148 173 0.82 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF133-206 - 591 3.2e-08 33.2 81.8 2 15 0.098 84 3.1 0.2 10 23 181 197 179 199 0.82 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF133-206 - 591 3.2e-08 33.2 81.8 3 15 0.087 74 3.2 0.1 7 14 209 216 207 225 0.88 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF133-206 - 591 3.2e-08 33.2 81.8 4 15 0.058 49 3.8 0.1 7 16 237 246 234 254 0.83 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF133-206 - 591 3.2e-08 33.2 81.8 5 15 0.022 19 5.1 0.1 7 23 265 281 262 284 0.88 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF133-206 - 591 3.2e-08 33.2 81.8 6 15 0.034 29 4.5 0.1 3 15 289 301 287 311 0.80 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF133-206 - 591 3.2e-08 33.2 81.8 7 15 0.0036 3.1 7.6 0.8 7 15 321 329 318 339 0.79 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF133-206 - 591 3.2e-08 33.2 81.8 8 15 1.3 1.1e+03 -0.6 0.7 7 24 349 366 347 368 0.74 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF133-206 - 591 3.2e-08 33.2 81.8 9 15 0.003 2.5 7.9 1.1 7 26 377 396 375 397 0.91 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF133-206 - 591 3.2e-08 33.2 81.8 10 15 0.0011 0.94 9.3 0.2 7 24 405 422 403 424 0.93 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF133-206 - 591 3.2e-08 33.2 81.8 11 15 0.12 1e+02 2.8 0.1 7 17 433 443 431 451 0.79 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF133-206 - 591 3.2e-08 33.2 81.8 12 15 0.00018 0.15 11.8 0.8 7 23 461 477 459 479 0.93 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF133-206 - 591 3.2e-08 33.2 81.8 13 15 0.024 20 5.0 0.2 7 20 489 502 486 507 0.77 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF133-206 - 591 3.2e-08 33.2 81.8 14 15 0.23 2e+02 1.9 0.7 5 14 515 524 511 535 0.83 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF133-206 - 591 3.2e-08 33.2 81.8 15 15 0.00086 0.74 9.6 2.1 7 24 545 562 543 565 0.94 zinc-finger C2H2-type ADK_lid PF05191.14 36 ZNF133-206 - 591 9.8e-08 31.8 50.9 1 12 0.36 3.1e+02 1.5 0.2 4 27 153 184 151 189 0.53 Adenylate kinase, active site lid ADK_lid PF05191.14 36 ZNF133-206 - 591 9.8e-08 31.8 50.9 2 12 0.00041 0.35 10.9 1.0 3 33 208 246 207 248 0.77 Adenylate kinase, active site lid ADK_lid PF05191.14 36 ZNF133-206 - 591 9.8e-08 31.8 50.9 3 12 0.0012 1.1 9.3 0.8 3 33 236 274 234 276 0.71 Adenylate kinase, active site lid ADK_lid PF05191.14 36 ZNF133-206 - 591 9.8e-08 31.8 50.9 4 12 0.03 25 4.9 1.0 3 28 264 297 262 304 0.69 Adenylate kinase, active site lid ADK_lid PF05191.14 36 ZNF133-206 - 591 9.8e-08 31.8 50.9 5 12 0.029 25 5.0 1.1 3 34 292 331 290 332 0.67 Adenylate kinase, active site lid ADK_lid PF05191.14 36 ZNF133-206 - 591 9.8e-08 31.8 50.9 6 12 0.0063 5.4 7.1 2.1 4 33 321 358 319 360 0.77 Adenylate kinase, active site lid ADK_lid PF05191.14 36 ZNF133-206 - 591 9.8e-08 31.8 50.9 7 12 0.079 67 3.6 2.7 3 28 348 381 347 384 0.74 Adenylate kinase, active site lid ADK_lid PF05191.14 36 ZNF133-206 - 591 9.8e-08 31.8 50.9 8 12 0.087 75 3.4 0.2 3 14 376 387 366 397 0.85 Adenylate kinase, active site lid ADK_lid PF05191.14 36 ZNF133-206 - 591 9.8e-08 31.8 50.9 9 12 1.9e-05 0.016 15.1 0.5 3 33 404 442 403 444 0.69 Adenylate kinase, active site lid ADK_lid PF05191.14 36 ZNF133-206 - 591 9.8e-08 31.8 50.9 10 12 0.021 18 5.4 3.2 3 28 460 493 459 528 0.63 Adenylate kinase, active site lid ADK_lid PF05191.14 36 ZNF133-206 - 591 9.8e-08 31.8 50.9 11 12 0.63 5.4e+02 0.7 0.2 3 11 516 524 515 535 0.72 Adenylate kinase, active site lid ADK_lid PF05191.14 36 ZNF133-206 - 591 9.8e-08 31.8 50.9 12 12 0.0097 8.3 6.5 0.3 3 14 544 555 543 575 0.80 Adenylate kinase, active site lid # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF133-206.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF133-206.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF133-206.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF133-206.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF133-206.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:59:51 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF133-207.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF133-207.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF133-207.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF133-207.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF133-207.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:59:52 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF133-208.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF133-208.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF133-208.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF133-208.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF133-208.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:59:52 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-C2H2 PF00096.26 23 ZNF133-209 - 594 2.2e-82 267.2 103.7 1 16 9.9 8.5e+03 -2.4 0.1 5 13 24 32 23 39 0.83 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF133-209 - 594 2.2e-82 267.2 103.7 2 16 2.4e-06 0.002 18.5 0.3 3 23 156 176 154 176 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF133-209 - 594 2.2e-82 267.2 103.7 3 16 4.6e-06 0.0039 17.6 0.2 1 23 182 204 182 204 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF133-209 - 594 2.2e-82 267.2 103.7 4 16 2.8e-07 0.00024 21.4 0.2 2 23 211 232 210 232 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF133-209 - 594 2.2e-82 267.2 103.7 5 16 4e-09 3.4e-06 27.2 0.5 1 23 238 260 238 260 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF133-209 - 594 2.2e-82 267.2 103.7 6 16 1.6e-08 1.4e-05 25.3 0.4 1 23 266 288 266 288 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF133-209 - 594 2.2e-82 267.2 103.7 7 16 1.7e-08 1.4e-05 25.2 0.1 2 23 295 316 294 316 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF133-209 - 594 2.2e-82 267.2 103.7 8 16 9.5e-08 8.1e-05 22.9 3.5 1 23 322 344 322 344 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF133-209 - 594 2.2e-82 267.2 103.7 9 16 1.4e-08 1.2e-05 25.5 1.5 1 23 350 372 350 372 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF133-209 - 594 2.2e-82 267.2 103.7 10 16 4.8e-08 4.1e-05 23.8 0.7 1 23 378 400 378 400 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF133-209 - 594 2.2e-82 267.2 103.7 11 16 3.3e-10 2.8e-07 30.6 0.4 2 23 407 428 406 428 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF133-209 - 594 2.2e-82 267.2 103.7 12 16 3.8e-09 3.3e-06 27.3 0.2 2 23 435 456 434 456 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF133-209 - 594 2.2e-82 267.2 103.7 13 16 1.2e-07 0.0001 22.5 1.1 1 23 462 484 462 484 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF133-209 - 594 2.2e-82 267.2 103.7 14 16 3.2e-05 0.028 14.9 0.2 1 23 490 512 490 512 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF133-209 - 594 2.2e-82 267.2 103.7 15 16 0.00015 0.13 12.8 3.3 2 23 519 540 518 540 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF133-209 - 594 2.2e-82 267.2 103.7 16 16 2e-06 0.0017 18.7 2.6 1 22 546 567 546 571 0.94 Zinc finger, C2H2 type zf-H2C2_2 PF13465.6 26 ZNF133-209 - 594 1.8e-78 255.7 78.1 1 16 9.2 7.9e+03 -2.4 0.1 16 25 155 164 152 165 0.82 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF133-209 - 594 1.8e-78 255.7 78.1 2 16 1.8e-08 1.6e-05 25.1 0.1 1 25 168 192 168 192 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF133-209 - 594 1.8e-78 255.7 78.1 3 16 8.1e-07 0.00069 19.9 0.1 1 25 196 220 196 221 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF133-209 - 594 1.8e-78 255.7 78.1 4 16 9e-08 7.7e-05 23.0 0.1 5 25 228 248 225 249 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF133-209 - 594 1.8e-78 255.7 78.1 5 16 6.1e-09 5.2e-06 26.6 0.1 2 25 253 276 252 277 0.90 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF133-209 - 594 1.8e-78 255.7 78.1 6 16 8.7e-05 0.074 13.5 0.0 2 24 281 303 280 304 0.88 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF133-209 - 594 1.8e-78 255.7 78.1 7 16 1.4e-08 1.2e-05 25.5 1.4 1 24 308 331 308 333 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF133-209 - 594 1.8e-78 255.7 78.1 8 16 1.3e-07 0.00011 22.5 0.8 2 25 337 360 336 361 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF133-209 - 594 1.8e-78 255.7 78.1 9 16 1.8e-08 1.5e-05 25.1 0.1 3 24 366 387 365 388 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF133-209 - 594 1.8e-78 255.7 78.1 10 16 4.9e-08 4.2e-05 23.8 0.2 1 25 392 416 392 417 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF133-209 - 594 1.8e-78 255.7 78.1 11 16 3.5e-07 0.0003 21.1 0.0 1 25 420 444 420 445 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF133-209 - 594 1.8e-78 255.7 78.1 12 16 4.8e-09 4.1e-06 27.0 0.3 1 26 448 473 448 473 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF133-209 - 594 1.8e-78 255.7 78.1 13 16 5e-07 0.00043 20.6 0.4 2 25 477 500 476 501 0.90 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF133-209 - 594 1.8e-78 255.7 78.1 14 16 0.0047 4 8.0 0.4 2 25 505 528 504 529 0.89 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF133-209 - 594 1.8e-78 255.7 78.1 15 16 3.5e-08 3e-05 24.2 0.5 1 24 532 555 532 557 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF133-209 - 594 1.8e-78 255.7 78.1 16 16 3.9 3.3e+03 -1.2 2.2 2 12 557 567 556 578 0.67 Zinc-finger double domain zf-C2H2_4 PF13894.6 24 ZNF133-209 - 594 5.4e-50 163.7 101.4 1 16 2.1 1.8e+03 0.3 0.3 4 14 23 33 23 43 0.68 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF133-209 - 594 5.4e-50 163.7 101.4 2 16 0.00057 0.49 11.4 0.3 2 23 155 176 154 177 0.91 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF133-209 - 594 5.4e-50 163.7 101.4 3 16 7.6e-06 0.0065 17.2 0.4 1 23 182 204 182 205 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF133-209 - 594 5.4e-50 163.7 101.4 4 16 2.9e-05 0.024 15.4 0.1 2 23 211 232 210 233 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF133-209 - 594 5.4e-50 163.7 101.4 5 16 6.3e-06 0.0054 17.5 0.4 1 23 238 260 238 261 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF133-209 - 594 5.4e-50 163.7 101.4 6 16 4.6e-06 0.0039 17.9 0.5 1 23 266 288 266 289 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF133-209 - 594 5.4e-50 163.7 101.4 7 16 4.7e-05 0.04 14.8 0.1 2 23 295 316 294 317 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF133-209 - 594 5.4e-50 163.7 101.4 8 16 1.8e-05 0.016 16.0 2.6 1 23 322 344 322 345 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF133-209 - 594 5.4e-50 163.7 101.4 9 16 4.2e-05 0.036 14.9 1.1 1 23 350 372 350 373 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF133-209 - 594 5.4e-50 163.7 101.4 10 16 1.7e-05 0.015 16.1 0.7 1 23 378 400 378 401 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF133-209 - 594 5.4e-50 163.7 101.4 11 16 3.3e-06 0.0028 18.3 0.3 2 23 407 428 406 429 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF133-209 - 594 5.4e-50 163.7 101.4 12 16 2.4e-05 0.02 15.7 0.2 3 23 436 456 435 457 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF133-209 - 594 5.4e-50 163.7 101.4 13 16 1.5e-05 0.013 16.3 1.0 1 23 462 484 462 485 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF133-209 - 594 5.4e-50 163.7 101.4 14 16 2.3e-05 0.02 15.7 0.2 1 23 490 512 490 513 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF133-209 - 594 5.4e-50 163.7 101.4 15 16 0.0079 6.8 7.8 3.0 2 23 519 540 518 541 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF133-209 - 594 5.4e-50 163.7 101.4 16 16 6.1e-05 0.052 14.4 1.4 1 22 546 567 546 569 0.93 C2H2-type zinc finger zf-C2H2_jaz PF12171.8 27 ZNF133-209 - 594 1.3e-14 54.0 33.3 1 14 0.19 1.7e+02 2.7 0.0 3 22 155 174 154 174 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF133-209 - 594 1.3e-14 54.0 33.3 2 14 0.042 36 4.8 0.0 2 22 182 202 181 202 0.86 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF133-209 - 594 1.3e-14 54.0 33.3 3 14 0.0058 5 7.5 0.0 4 24 212 232 209 233 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF133-209 - 594 1.3e-14 54.0 33.3 4 14 0.018 15 6.0 0.1 2 24 238 260 237 261 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF133-209 - 594 1.3e-14 54.0 33.3 5 14 0.014 12 6.3 0.0 2 24 266 288 265 289 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF133-209 - 594 1.3e-14 54.0 33.3 6 14 0.082 70 3.9 0.1 4 24 296 316 294 317 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF133-209 - 594 1.3e-14 54.0 33.3 7 14 0.026 23 5.4 0.3 2 24 322 344 321 345 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF133-209 - 594 1.3e-14 54.0 33.3 8 14 2 1.7e+03 -0.5 0.1 2 24 350 372 349 372 0.87 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF133-209 - 594 1.3e-14 54.0 33.3 9 14 0.59 5e+02 1.2 0.0 2 21 378 397 377 398 0.79 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF133-209 - 594 1.3e-14 54.0 33.3 10 14 0.004 3.4 8.1 0.1 4 24 408 428 405 429 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF133-209 - 594 1.3e-14 54.0 33.3 11 14 0.014 12 6.4 0.1 4 24 436 456 435 457 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF133-209 - 594 1.3e-14 54.0 33.3 12 14 0.048 41 4.6 0.0 2 22 462 482 461 485 0.88 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF133-209 - 594 1.3e-14 54.0 33.3 13 14 0.11 91 3.5 0.0 2 22 490 510 489 510 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF133-209 - 594 1.3e-14 54.0 33.3 14 14 0.035 30 5.0 0.2 2 23 546 567 545 571 0.85 Zinc-finger double-stranded RNA-binding Zn-ribbon_8 PF09723.10 40 ZNF133-209 - 594 8.8e-10 38.6 61.4 1 14 0.059 50 4.1 0.6 8 34 156 189 153 195 0.80 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF133-209 - 594 8.8e-10 38.6 61.4 2 14 0.00091 0.78 9.9 0.7 6 35 182 218 181 223 0.83 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF133-209 - 594 8.8e-10 38.6 61.4 3 14 0.0048 4.1 7.6 2.6 7 34 211 245 210 251 0.79 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF133-209 - 594 8.8e-10 38.6 61.4 4 14 0.06 51 4.1 0.2 6 16 238 248 237 264 0.82 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF133-209 - 594 8.8e-10 38.6 61.4 5 14 2.9e-05 0.025 14.7 0.8 6 33 266 300 265 306 0.90 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF133-209 - 594 8.8e-10 38.6 61.4 6 14 0.024 20 5.4 5.9 6 34 322 357 321 362 0.83 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF133-209 - 594 8.8e-10 38.6 61.4 7 14 0.0016 1.4 9.1 0.4 6 34 350 385 349 388 0.79 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF133-209 - 594 8.8e-10 38.6 61.4 8 14 0.00014 0.12 12.5 0.2 6 34 378 413 377 419 0.86 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF133-209 - 594 8.8e-10 38.6 61.4 9 14 0.0013 1.1 9.4 1.7 7 34 407 441 406 447 0.84 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF133-209 - 594 8.8e-10 38.6 61.4 10 14 0.01 8.6 6.6 2.9 7 34 435 469 432 474 0.84 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF133-209 - 594 8.8e-10 38.6 61.4 11 14 0.00028 0.24 11.5 1.2 6 33 462 496 461 498 0.84 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF133-209 - 594 8.8e-10 38.6 61.4 12 14 0.013 11 6.2 4.0 6 35 490 527 489 531 0.75 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF133-209 - 594 8.8e-10 38.6 61.4 13 14 0.028 24 5.2 5.1 8 34 520 553 515 559 0.89 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF133-209 - 594 8.8e-10 38.6 61.4 14 14 0.021 18 5.6 0.2 6 18 546 558 543 569 0.78 Zinc ribbon domain zinc_ribbon_15 PF17032.5 86 ZNF133-209 - 594 3.8e-09 37.2 45.3 1 11 0.21 1.8e+02 3.0 0.2 38 73 154 189 143 194 0.87 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF133-209 - 594 3.8e-09 37.2 45.3 2 11 0.0025 2.2 9.1 1.8 32 77 176 221 154 225 0.86 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF133-209 - 594 3.8e-09 37.2 45.3 3 11 0.00093 0.8 10.5 0.7 35 78 235 278 224 282 0.84 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF133-209 - 594 3.8e-09 37.2 45.3 4 11 0.00043 0.36 11.6 1.2 34 75 290 331 281 337 0.86 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF133-209 - 594 3.8e-09 37.2 45.3 5 11 0.0096 8.2 7.3 1.8 32 73 372 413 337 420 0.51 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF133-209 - 594 3.8e-09 37.2 45.3 6 11 0.00035 0.3 11.9 0.4 33 79 401 447 395 452 0.87 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF133-209 - 594 3.8e-09 37.2 45.3 7 11 0.00072 0.62 10.9 0.2 31 77 427 473 420 477 0.85 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF133-209 - 594 3.8e-09 37.2 45.3 8 11 0.0026 2.2 9.1 0.3 35 73 459 497 449 505 0.85 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF133-209 - 594 3.8e-09 37.2 45.3 9 11 0.0038 3.2 8.5 2.2 33 74 486 526 477 533 0.83 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF133-209 - 594 3.8e-09 37.2 45.3 10 11 0.047 40 5.1 1.9 33 74 513 554 504 563 0.82 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF133-209 - 594 3.8e-09 37.2 45.3 11 11 1.4 1.2e+03 0.4 0.1 38 54 546 562 536 573 0.63 zinc-ribbon family zf-C2H2_11 PF16622.5 29 ZNF133-209 - 594 3.4e-08 33.1 81.8 1 15 0.0041 3.5 7.5 0.4 4 26 153 175 151 176 0.82 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF133-209 - 594 3.4e-08 33.1 81.8 2 15 0.099 84 3.0 0.2 10 23 184 200 182 202 0.82 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF133-209 - 594 3.4e-08 33.1 81.8 3 15 0.088 75 3.2 0.1 7 14 212 219 210 228 0.88 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF133-209 - 594 3.4e-08 33.1 81.8 4 15 0.058 49 3.8 0.1 7 16 240 249 237 257 0.83 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF133-209 - 594 3.4e-08 33.1 81.8 5 15 0.022 19 5.1 0.1 7 23 268 284 265 287 0.88 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF133-209 - 594 3.4e-08 33.1 81.8 6 15 0.034 29 4.5 0.1 3 15 292 304 290 314 0.80 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF133-209 - 594 3.4e-08 33.1 81.8 7 15 0.0036 3.1 7.6 0.8 7 15 324 332 321 342 0.79 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF133-209 - 594 3.4e-08 33.1 81.8 8 15 1.3 1.1e+03 -0.6 0.7 7 24 352 369 350 371 0.74 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF133-209 - 594 3.4e-08 33.1 81.8 9 15 0.003 2.6 7.9 1.1 7 26 380 399 378 400 0.91 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF133-209 - 594 3.4e-08 33.1 81.8 10 15 0.0011 0.95 9.3 0.2 7 24 408 425 406 427 0.93 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF133-209 - 594 3.4e-08 33.1 81.8 11 15 0.12 1e+02 2.8 0.1 7 17 436 446 434 454 0.79 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF133-209 - 594 3.4e-08 33.1 81.8 12 15 0.00018 0.16 11.8 0.8 7 23 464 480 462 482 0.93 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF133-209 - 594 3.4e-08 33.1 81.8 13 15 0.024 20 5.0 0.2 7 20 492 505 489 510 0.77 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF133-209 - 594 3.4e-08 33.1 81.8 14 15 0.23 2e+02 1.9 0.7 5 14 518 527 514 538 0.83 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF133-209 - 594 3.4e-08 33.1 81.8 15 15 0.00087 0.74 9.6 2.1 7 24 548 565 546 568 0.94 zinc-finger C2H2-type ADK_lid PF05191.14 36 ZNF133-209 - 594 8.1e-08 32.1 50.5 1 12 0.36 3.1e+02 1.5 0.2 4 27 156 187 154 192 0.53 Adenylate kinase, active site lid ADK_lid PF05191.14 36 ZNF133-209 - 594 8.1e-08 32.1 50.5 2 12 0.00042 0.36 10.9 1.0 3 33 211 249 210 251 0.77 Adenylate kinase, active site lid ADK_lid PF05191.14 36 ZNF133-209 - 594 8.1e-08 32.1 50.5 3 12 0.0012 1.1 9.3 0.8 3 33 239 277 238 279 0.70 Adenylate kinase, active site lid ADK_lid PF05191.14 36 ZNF133-209 - 594 8.1e-08 32.1 50.5 4 12 0.029 25 5.0 1.0 3 28 267 300 265 307 0.69 Adenylate kinase, active site lid ADK_lid PF05191.14 36 ZNF133-209 - 594 8.1e-08 32.1 50.5 5 12 0.028 24 5.0 1.0 3 34 295 334 294 335 0.67 Adenylate kinase, active site lid ADK_lid PF05191.14 36 ZNF133-209 - 594 8.1e-08 32.1 50.5 6 12 0.0059 5 7.2 1.9 4 33 324 361 322 363 0.77 Adenylate kinase, active site lid ADK_lid PF05191.14 36 ZNF133-209 - 594 8.1e-08 32.1 50.5 7 12 0.075 64 3.7 2.6 3 28 351 384 350 387 0.74 Adenylate kinase, active site lid ADK_lid PF05191.14 36 ZNF133-209 - 594 8.1e-08 32.1 50.5 8 12 0.087 75 3.4 0.2 3 14 379 390 369 400 0.85 Adenylate kinase, active site lid ADK_lid PF05191.14 36 ZNF133-209 - 594 8.1e-08 32.1 50.5 9 12 1.9e-05 0.017 15.1 0.5 3 33 407 445 406 447 0.69 Adenylate kinase, active site lid ADK_lid PF05191.14 36 ZNF133-209 - 594 8.1e-08 32.1 50.5 10 12 0.019 16 5.5 3.1 3 28 463 496 462 531 0.63 Adenylate kinase, active site lid ADK_lid PF05191.14 36 ZNF133-209 - 594 8.1e-08 32.1 50.5 11 12 0.64 5.4e+02 0.7 0.2 3 11 519 527 518 538 0.72 Adenylate kinase, active site lid ADK_lid PF05191.14 36 ZNF133-209 - 594 8.1e-08 32.1 50.5 12 12 0.0098 8.3 6.5 0.3 3 14 547 558 546 578 0.80 Adenylate kinase, active site lid # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF133-209.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF133-209.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF133-209.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF133-209.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF133-209.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:59:53 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-C2H2 PF00096.26 23 ZNF133-210 - 667 1.5e-81 264.6 103.7 1 15 2.5e-06 0.0023 18.3 0.3 3 23 229 249 227 249 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF133-210 - 667 1.5e-81 264.6 103.7 2 15 4.7e-06 0.0045 17.4 0.2 1 23 255 277 255 277 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF133-210 - 667 1.5e-81 264.6 103.7 3 15 2.9e-07 0.00028 21.2 0.2 2 23 284 305 283 305 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF133-210 - 667 1.5e-81 264.6 103.7 4 15 4.2e-09 4e-06 27.0 0.5 1 23 311 333 311 333 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF133-210 - 667 1.5e-81 264.6 103.7 5 15 1.7e-08 1.6e-05 25.1 0.4 1 23 339 361 339 361 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF133-210 - 667 1.5e-81 264.6 103.7 6 15 1.7e-08 1.6e-05 25.1 0.1 2 23 368 389 367 389 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF133-210 - 667 1.5e-81 264.6 103.7 7 15 9.9e-08 9.3e-05 22.7 3.5 1 23 395 417 395 417 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF133-210 - 667 1.5e-81 264.6 103.7 8 15 1.5e-08 1.4e-05 25.3 1.5 1 23 423 445 423 445 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF133-210 - 667 1.5e-81 264.6 103.7 9 15 4.9e-08 4.6e-05 23.6 0.7 1 23 451 473 451 473 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF133-210 - 667 1.5e-81 264.6 103.7 10 15 3.4e-10 3.2e-07 30.4 0.4 2 23 480 501 479 501 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF133-210 - 667 1.5e-81 264.6 103.7 11 15 4e-09 3.7e-06 27.1 0.2 2 23 508 529 507 529 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF133-210 - 667 1.5e-81 264.6 103.7 12 15 1.3e-07 0.00012 22.3 1.1 1 23 535 557 535 557 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF133-210 - 667 1.5e-81 264.6 103.7 13 15 3.4e-05 0.032 14.7 0.2 1 23 563 585 563 585 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF133-210 - 667 1.5e-81 264.6 103.7 14 15 0.00016 0.15 12.6 3.3 2 23 592 613 591 613 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF133-210 - 667 1.5e-81 264.6 103.7 15 15 2.1e-06 0.002 18.5 2.6 1 22 619 640 619 644 0.94 Zinc finger, C2H2 type zf-H2C2_2 PF13465.6 26 ZNF133-210 - 667 1e-77 253.3 77.9 1 16 9.5 8.9e+03 -2.6 0.1 16 25 228 237 225 238 0.82 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF133-210 - 667 1e-77 253.3 77.9 2 16 1.9e-08 1.8e-05 24.9 0.1 1 25 241 265 241 265 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF133-210 - 667 1e-77 253.3 77.9 3 16 8.4e-07 0.00079 19.7 0.1 1 25 269 293 269 294 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF133-210 - 667 1e-77 253.3 77.9 4 16 9.3e-08 8.8e-05 22.8 0.1 5 25 301 321 298 322 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF133-210 - 667 1e-77 253.3 77.9 5 16 6.3e-09 6e-06 26.5 0.1 2 25 326 349 325 350 0.90 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF133-210 - 667 1e-77 253.3 77.9 6 16 9e-05 0.085 13.3 0.0 2 24 354 376 353 377 0.88 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF133-210 - 667 1e-77 253.3 77.9 7 16 1.5e-08 1.4e-05 25.3 1.4 1 24 381 404 381 406 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF133-210 - 667 1e-77 253.3 77.9 8 16 1.3e-07 0.00012 22.3 0.8 2 25 410 433 409 434 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF133-210 - 667 1e-77 253.3 77.9 9 16 1.9e-08 1.8e-05 25.0 0.1 3 24 439 460 438 461 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF133-210 - 667 1e-77 253.3 77.9 10 16 5.1e-08 4.8e-05 23.6 0.2 1 25 465 489 465 490 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF133-210 - 667 1e-77 253.3 77.9 11 16 3.7e-07 0.00035 20.9 0.0 1 25 493 517 493 518 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF133-210 - 667 1e-77 253.3 77.9 12 16 5e-09 4.7e-06 26.8 0.3 1 26 521 546 521 546 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF133-210 - 667 1e-77 253.3 77.9 13 16 5.2e-07 0.00049 20.4 0.4 2 25 550 573 549 574 0.90 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF133-210 - 667 1e-77 253.3 77.9 14 16 0.0049 4.6 7.8 0.4 2 25 578 601 577 602 0.89 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF133-210 - 667 1e-77 253.3 77.9 15 16 3.7e-08 3.5e-05 24.0 0.6 1 24 605 628 605 630 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF133-210 - 667 1e-77 253.3 77.9 16 16 3.3 3.1e+03 -1.1 1.9 2 12 630 640 629 651 0.67 Zinc-finger double domain zf-C2H2_4 PF13894.6 24 ZNF133-210 - 667 4.4e-49 160.9 101.4 1 16 2.2 2.1e+03 0.1 0.3 4 14 96 106 96 116 0.68 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF133-210 - 667 4.4e-49 160.9 101.4 2 16 0.0006 0.56 11.2 0.3 2 23 228 249 227 250 0.91 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF133-210 - 667 4.4e-49 160.9 101.4 3 16 7.9e-06 0.0074 17.0 0.4 1 23 255 277 255 278 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF133-210 - 667 4.4e-49 160.9 101.4 4 16 3e-05 0.028 15.2 0.1 2 23 284 305 283 306 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF133-210 - 667 4.4e-49 160.9 101.4 5 16 6.5e-06 0.0062 17.3 0.4 1 23 311 333 311 334 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF133-210 - 667 4.4e-49 160.9 101.4 6 16 4.7e-06 0.0045 17.7 0.5 1 23 339 361 339 362 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF133-210 - 667 4.4e-49 160.9 101.4 7 16 4.8e-05 0.046 14.6 0.1 2 23 368 389 367 390 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF133-210 - 667 4.4e-49 160.9 101.4 8 16 1.9e-05 0.018 15.9 2.6 1 23 395 417 395 418 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF133-210 - 667 4.4e-49 160.9 101.4 9 16 4.3e-05 0.041 14.7 1.1 1 23 423 445 423 446 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF133-210 - 667 4.4e-49 160.9 101.4 10 16 1.8e-05 0.017 15.9 0.7 1 23 451 473 451 474 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF133-210 - 667 4.4e-49 160.9 101.4 11 16 3.4e-06 0.0032 18.2 0.3 2 23 480 501 479 502 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF133-210 - 667 4.4e-49 160.9 101.4 12 16 2.5e-05 0.023 15.5 0.2 3 23 509 529 508 530 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF133-210 - 667 4.4e-49 160.9 101.4 13 16 1.5e-05 0.015 16.1 1.0 1 23 535 557 535 558 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF133-210 - 667 4.4e-49 160.9 101.4 14 16 2.4e-05 0.023 15.5 0.2 1 23 563 585 563 586 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF133-210 - 667 4.4e-49 160.9 101.4 15 16 0.0082 7.8 7.6 3.0 2 23 592 613 591 614 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF133-210 - 667 4.4e-49 160.9 101.4 16 16 6.3e-05 0.059 14.2 1.4 1 22 619 640 619 642 0.93 C2H2-type zinc finger zf-C2H2_jaz PF12171.8 27 ZNF133-210 - 667 7.8e-14 51.5 33.3 1 14 0.2 1.9e+02 2.5 0.0 3 22 228 247 227 247 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF133-210 - 667 7.8e-14 51.5 33.3 2 14 0.043 41 4.6 0.0 2 22 255 275 254 275 0.86 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF133-210 - 667 7.8e-14 51.5 33.3 3 14 0.006 5.7 7.4 0.0 4 24 285 305 282 306 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF133-210 - 667 7.8e-14 51.5 33.3 4 14 0.019 18 5.8 0.1 2 24 311 333 310 334 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF133-210 - 667 7.8e-14 51.5 33.3 5 14 0.014 14 6.2 0.0 2 24 339 361 338 362 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF133-210 - 667 7.8e-14 51.5 33.3 6 14 0.085 80 3.7 0.1 4 24 369 389 367 390 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF133-210 - 667 7.8e-14 51.5 33.3 7 14 0.027 26 5.3 0.3 2 24 395 417 394 418 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF133-210 - 667 7.8e-14 51.5 33.3 8 14 2.1 2e+03 -0.7 0.1 2 24 423 445 422 445 0.86 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF133-210 - 667 7.8e-14 51.5 33.3 9 14 0.6 5.7e+02 1.0 0.0 2 21 451 470 450 471 0.79 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF133-210 - 667 7.8e-14 51.5 33.3 10 14 0.0042 3.9 7.9 0.1 4 24 481 501 478 502 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF133-210 - 667 7.8e-14 51.5 33.3 11 14 0.014 13 6.2 0.1 4 24 509 529 508 530 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF133-210 - 667 7.8e-14 51.5 33.3 12 14 0.049 47 4.4 0.0 2 22 535 555 534 558 0.88 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF133-210 - 667 7.8e-14 51.5 33.3 13 14 0.11 1e+02 3.3 0.0 2 22 563 583 562 583 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF133-210 - 667 7.8e-14 51.5 33.3 14 14 0.037 34 4.9 0.2 2 23 619 640 618 644 0.85 Zinc-finger double-stranded RNA-binding Zn-ribbon_8 PF09723.10 40 ZNF133-210 - 667 1.8e-09 37.6 60.7 1 14 0.056 53 4.0 0.5 8 34 229 262 226 268 0.80 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF133-210 - 667 1.8e-09 37.6 60.7 2 14 0.00097 0.91 9.7 0.8 6 35 255 291 254 296 0.83 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF133-210 - 667 1.8e-09 37.6 60.7 3 14 0.0056 5.3 7.2 2.6 7 34 284 318 283 323 0.79 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF133-210 - 667 1.8e-09 37.6 60.7 4 14 0.062 58 3.9 0.2 6 16 311 321 309 336 0.83 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF133-210 - 667 1.8e-09 37.6 60.7 5 14 3.2e-05 0.03 14.4 0.9 6 33 339 373 338 379 0.90 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF133-210 - 667 1.8e-09 37.6 60.7 6 14 0.028 26 5.0 6.0 6 34 395 430 394 434 0.83 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF133-210 - 667 1.8e-09 37.6 60.7 7 14 0.0014 1.3 9.1 0.3 6 34 423 458 422 463 0.80 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF133-210 - 667 1.8e-09 37.6 60.7 8 14 0.00016 0.15 12.2 0.2 6 34 451 486 450 491 0.86 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF133-210 - 667 1.8e-09 37.6 60.7 9 14 0.0014 1.3 9.2 1.7 7 34 480 514 479 520 0.84 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF133-210 - 667 1.8e-09 37.6 60.7 10 14 0.012 11 6.2 3.0 7 34 508 542 499 546 0.86 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF133-210 - 667 1.8e-09 37.6 60.7 11 14 0.0003 0.28 11.3 1.2 6 33 535 569 534 571 0.84 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF133-210 - 667 1.8e-09 37.6 60.7 12 14 0.012 11 6.2 3.8 6 35 563 600 562 604 0.75 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF133-210 - 667 1.8e-09 37.6 60.7 13 14 0.0027 2.5 8.3 1.6 8 34 593 626 592 631 0.88 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF133-210 - 667 1.8e-09 37.6 60.7 14 14 0.022 21 5.3 0.1 6 17 619 630 618 641 0.76 Zinc ribbon domain zinc_ribbon_15 PF17032.5 86 ZNF133-210 - 667 1.3e-08 35.5 45.5 1 8 0.29 2.8e+02 2.4 0.2 38 73 227 262 216 264 0.87 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF133-210 - 667 1.3e-08 35.5 45.5 2 8 0.0029 2.7 8.8 1.9 32 77 249 294 228 298 0.86 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF133-210 - 667 1.3e-08 35.5 45.5 3 8 0.001 0.98 10.2 0.9 35 78 308 351 295 356 0.84 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF133-210 - 667 1.3e-08 35.5 45.5 4 8 0.00049 0.46 11.3 1.4 34 75 363 404 351 410 0.86 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF133-210 - 667 1.3e-08 35.5 45.5 5 8 0.0077 7.2 7.4 1.5 32 74 445 487 408 494 0.53 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF133-210 - 667 1.3e-08 35.5 45.5 6 8 0.00038 0.36 11.6 0.4 33 79 474 520 469 525 0.87 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF133-210 - 667 1.3e-08 35.5 45.5 7 8 0.00082 0.77 10.5 0.2 31 76 500 545 493 549 0.85 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF133-210 - 667 1.3e-08 35.5 45.5 8 8 0.12 1.2e+02 3.6 7.8 33 73 559 598 522 633 0.74 zinc-ribbon family zf-C2H2_11 PF16622.5 29 ZNF133-210 - 667 2.2e-07 30.5 81.8 1 15 0.0042 4 7.3 0.4 4 26 226 248 224 249 0.82 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF133-210 - 667 2.2e-07 30.5 81.8 2 15 0.1 96 2.9 0.2 10 23 257 273 255 275 0.82 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF133-210 - 667 2.2e-07 30.5 81.8 3 15 0.09 85 3.0 0.1 7 14 285 292 283 301 0.88 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF133-210 - 667 2.2e-07 30.5 81.8 4 15 0.06 56 3.6 0.1 7 16 313 322 310 330 0.83 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF133-210 - 667 2.2e-07 30.5 81.8 5 15 0.023 21 5.0 0.1 7 23 341 357 338 360 0.88 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF133-210 - 667 2.2e-07 30.5 81.8 6 15 0.035 33 4.3 0.1 3 15 365 377 363 387 0.80 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF133-210 - 667 2.2e-07 30.5 81.8 7 15 0.0038 3.5 7.5 0.8 7 15 397 405 394 415 0.79 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF133-210 - 667 2.2e-07 30.5 81.8 8 15 1.4 1.3e+03 -0.8 0.7 7 24 425 442 423 444 0.74 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF133-210 - 667 2.2e-07 30.5 81.8 9 15 0.0031 2.9 7.7 1.1 7 26 453 472 451 473 0.91 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF133-210 - 667 2.2e-07 30.5 81.8 10 15 0.0011 1.1 9.1 0.2 7 24 481 498 479 500 0.93 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF133-210 - 667 2.2e-07 30.5 81.8 11 15 0.12 1.2e+02 2.6 0.1 7 17 509 519 507 527 0.79 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF133-210 - 667 2.2e-07 30.5 81.8 12 15 0.00019 0.18 11.6 0.8 7 23 537 553 535 555 0.93 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF133-210 - 667 2.2e-07 30.5 81.8 13 15 0.025 23 4.8 0.2 7 20 565 578 562 583 0.77 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF133-210 - 667 2.2e-07 30.5 81.8 14 15 0.24 2.2e+02 1.7 0.7 5 14 591 600 587 611 0.83 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF133-210 - 667 2.2e-07 30.5 81.8 15 15 0.00089 0.84 9.4 2.1 7 24 621 638 619 641 0.94 zinc-finger C2H2-type ADK_lid PF05191.14 36 ZNF133-210 - 667 6.3e-07 29.3 51.6 1 12 0.42 3.9e+02 1.1 0.4 4 27 229 260 227 267 0.55 Adenylate kinase, active site lid ADK_lid PF05191.14 36 ZNF133-210 - 667 6.3e-07 29.3 51.6 2 12 0.00041 0.38 10.8 0.9 3 33 284 322 283 324 0.77 Adenylate kinase, active site lid ADK_lid PF05191.14 36 ZNF133-210 - 667 6.3e-07 29.3 51.6 3 12 0.0012 1.2 9.2 0.7 3 33 312 350 311 352 0.70 Adenylate kinase, active site lid ADK_lid PF05191.14 36 ZNF133-210 - 667 6.3e-07 29.3 51.6 4 12 0.032 30 4.7 1.0 3 28 340 373 339 380 0.68 Adenylate kinase, active site lid ADK_lid PF05191.14 36 ZNF133-210 - 667 6.3e-07 29.3 51.6 5 12 0.03 29 4.8 1.1 3 34 368 407 367 408 0.67 Adenylate kinase, active site lid ADK_lid PF05191.14 36 ZNF133-210 - 667 6.3e-07 29.3 51.6 6 12 0.0051 4.8 7.2 1.7 4 33 397 434 395 436 0.77 Adenylate kinase, active site lid ADK_lid PF05191.14 36 ZNF133-210 - 667 6.3e-07 29.3 51.6 7 12 0.063 60 3.7 2.4 3 28 424 457 423 461 0.73 Adenylate kinase, active site lid ADK_lid PF05191.14 36 ZNF133-210 - 667 6.3e-07 29.3 51.6 8 12 0.092 87 3.2 0.2 3 14 452 463 450 473 0.80 Adenylate kinase, active site lid ADK_lid PF05191.14 36 ZNF133-210 - 667 6.3e-07 29.3 51.6 9 12 2e-05 0.019 14.9 0.5 3 33 480 518 479 520 0.69 Adenylate kinase, active site lid ADK_lid PF05191.14 36 ZNF133-210 - 667 6.3e-07 29.3 51.6 10 12 0.027 25 4.9 3.5 3 28 536 569 535 604 0.63 Adenylate kinase, active site lid ADK_lid PF05191.14 36 ZNF133-210 - 667 6.3e-07 29.3 51.6 11 12 0.65 6.1e+02 0.5 0.2 3 11 592 600 591 611 0.72 Adenylate kinase, active site lid ADK_lid PF05191.14 36 ZNF133-210 - 667 6.3e-07 29.3 51.6 12 12 0.01 9.5 6.3 0.3 3 14 620 631 619 651 0.80 Adenylate kinase, active site lid # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF133-210.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF133-210.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF133-210.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF133-210.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF133-210.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:59:53 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-C2H2 PF00096.26 23 ZNF133-211 - 635 7.2e-82 265.5 103.7 1 16 9.7 9.1e+03 -2.5 0.1 5 13 65 73 64 80 0.83 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF133-211 - 635 7.2e-82 265.5 103.7 2 16 2.3e-06 0.0022 18.4 0.3 3 23 197 217 195 217 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF133-211 - 635 7.2e-82 265.5 103.7 3 16 4.5e-06 0.0042 17.5 0.2 1 23 223 245 223 245 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF133-211 - 635 7.2e-82 265.5 103.7 4 16 2.8e-07 0.00026 21.3 0.2 2 23 252 273 251 273 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF133-211 - 635 7.2e-82 265.5 103.7 5 16 4e-09 3.7e-06 27.1 0.5 1 23 279 301 279 301 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF133-211 - 635 7.2e-82 265.5 103.7 6 16 1.6e-08 1.5e-05 25.2 0.4 1 23 307 329 307 329 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF133-211 - 635 7.2e-82 265.5 103.7 7 16 1.6e-08 1.5e-05 25.1 0.1 2 23 336 357 335 357 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF133-211 - 635 7.2e-82 265.5 103.7 8 16 9.3e-08 8.8e-05 22.8 3.5 1 23 363 385 363 385 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF133-211 - 635 7.2e-82 265.5 103.7 9 16 1.4e-08 1.3e-05 25.3 1.5 1 23 391 413 391 413 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF133-211 - 635 7.2e-82 265.5 103.7 10 16 4.7e-08 4.4e-05 23.7 0.7 1 23 419 441 419 441 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF133-211 - 635 7.2e-82 265.5 103.7 11 16 3.2e-10 3e-07 30.5 0.4 2 23 448 469 447 469 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF133-211 - 635 7.2e-82 265.5 103.7 12 16 3.7e-09 3.5e-06 27.2 0.2 2 23 476 497 475 497 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF133-211 - 635 7.2e-82 265.5 103.7 13 16 1.2e-07 0.00011 22.4 1.1 1 23 503 525 503 525 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF133-211 - 635 7.2e-82 265.5 103.7 14 16 3.2e-05 0.03 14.8 0.2 1 23 531 553 531 553 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF133-211 - 635 7.2e-82 265.5 103.7 15 16 0.00015 0.14 12.7 3.3 2 23 560 581 559 581 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF133-211 - 635 7.2e-82 265.5 103.7 16 16 2e-06 0.0019 18.6 2.6 1 22 587 608 587 612 0.94 Zinc finger, C2H2 type zf-H2C2_2 PF13465.6 26 ZNF133-211 - 635 4.8e-78 254.4 77.9 1 16 9 8.5e+03 -2.5 0.1 16 25 196 205 193 206 0.82 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF133-211 - 635 4.8e-78 254.4 77.9 2 16 1.8e-08 1.7e-05 25.0 0.1 1 25 209 233 209 233 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF133-211 - 635 4.8e-78 254.4 77.9 3 16 7.9e-07 0.00075 19.8 0.1 1 25 237 261 237 262 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF133-211 - 635 4.8e-78 254.4 77.9 4 16 8.8e-08 8.3e-05 22.8 0.1 5 25 269 289 266 290 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF133-211 - 635 4.8e-78 254.4 77.9 5 16 6e-09 5.6e-06 26.5 0.1 2 25 294 317 293 318 0.90 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF133-211 - 635 4.8e-78 254.4 77.9 6 16 8.5e-05 0.08 13.4 0.0 2 24 322 344 321 345 0.88 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF133-211 - 635 4.8e-78 254.4 77.9 7 16 1.4e-08 1.3e-05 25.4 1.4 1 24 349 372 349 374 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF133-211 - 635 4.8e-78 254.4 77.9 8 16 1.2e-07 0.00012 22.4 0.8 2 25 378 401 377 402 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF133-211 - 635 4.8e-78 254.4 77.9 9 16 1.8e-08 1.7e-05 25.0 0.1 3 24 407 428 406 429 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF133-211 - 635 4.8e-78 254.4 77.9 10 16 4.8e-08 4.5e-05 23.7 0.2 1 25 433 457 433 458 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF133-211 - 635 4.8e-78 254.4 77.9 11 16 3.5e-07 0.00033 21.0 0.0 1 25 461 485 461 486 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF133-211 - 635 4.8e-78 254.4 77.9 12 16 4.7e-09 4.5e-06 26.9 0.3 1 26 489 514 489 514 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF133-211 - 635 4.8e-78 254.4 77.9 13 16 4.9e-07 0.00046 20.5 0.4 2 25 518 541 517 542 0.90 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF133-211 - 635 4.8e-78 254.4 77.9 14 16 0.0046 4.4 7.9 0.4 2 25 546 569 545 570 0.89 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF133-211 - 635 4.8e-78 254.4 77.9 15 16 3.5e-08 3.3e-05 24.1 0.6 1 24 573 596 573 598 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF133-211 - 635 4.8e-78 254.4 77.9 16 16 3.1 2.9e+03 -1.0 1.9 2 12 598 608 597 619 0.67 Zinc-finger double domain zf-C2H2_4 PF13894.6 24 ZNF133-211 - 635 1.9e-49 162.0 101.4 1 16 2.1 2e+03 0.2 0.3 4 14 64 74 64 84 0.68 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF133-211 - 635 1.9e-49 162.0 101.4 2 16 0.00056 0.53 11.3 0.3 2 23 196 217 195 218 0.91 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF133-211 - 635 1.9e-49 162.0 101.4 3 16 7.4e-06 0.007 17.1 0.4 1 23 223 245 223 246 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF133-211 - 635 1.9e-49 162.0 101.4 4 16 2.8e-05 0.026 15.3 0.1 2 23 252 273 251 274 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF133-211 - 635 1.9e-49 162.0 101.4 5 16 6.2e-06 0.0058 17.4 0.4 1 23 279 301 279 302 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF133-211 - 635 1.9e-49 162.0 101.4 6 16 4.5e-06 0.0042 17.8 0.5 1 23 307 329 307 330 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF133-211 - 635 1.9e-49 162.0 101.4 7 16 4.6e-05 0.043 14.7 0.1 2 23 336 357 335 358 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF133-211 - 635 1.9e-49 162.0 101.4 8 16 1.8e-05 0.017 15.9 2.6 1 23 363 385 363 386 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF133-211 - 635 1.9e-49 162.0 101.4 9 16 4.1e-05 0.039 14.8 1.1 1 23 391 413 391 414 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF133-211 - 635 1.9e-49 162.0 101.4 10 16 1.7e-05 0.016 16.0 0.7 1 23 419 441 419 442 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF133-211 - 635 1.9e-49 162.0 101.4 11 16 3.2e-06 0.0031 18.2 0.3 2 23 448 469 447 470 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF133-211 - 635 1.9e-49 162.0 101.4 12 16 2.3e-05 0.022 15.6 0.2 3 23 477 497 476 498 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF133-211 - 635 1.9e-49 162.0 101.4 13 16 1.5e-05 0.014 16.2 1.0 1 23 503 525 503 526 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF133-211 - 635 1.9e-49 162.0 101.4 14 16 2.3e-05 0.021 15.6 0.2 1 23 531 553 531 554 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF133-211 - 635 1.9e-49 162.0 101.4 15 16 0.0078 7.3 7.7 3.0 2 23 560 581 559 582 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF133-211 - 635 1.9e-49 162.0 101.4 16 16 5.9e-05 0.056 14.3 1.4 1 22 587 608 587 610 0.93 C2H2-type zinc finger zf-C2H2_jaz PF12171.8 27 ZNF133-211 - 635 3.7e-14 52.6 33.3 1 14 0.19 1.8e+02 2.6 0.0 3 22 196 215 195 215 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF133-211 - 635 3.7e-14 52.6 33.3 2 14 0.041 38 4.7 0.0 2 22 223 243 222 243 0.86 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF133-211 - 635 3.7e-14 52.6 33.3 3 14 0.0057 5.4 7.4 0.0 4 24 253 273 250 274 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF133-211 - 635 3.7e-14 52.6 33.3 4 14 0.018 17 5.9 0.1 2 24 279 301 278 302 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF133-211 - 635 3.7e-14 52.6 33.3 5 14 0.014 13 6.2 0.0 2 24 307 329 306 330 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF133-211 - 635 3.7e-14 52.6 33.3 6 14 0.08 75 3.8 0.1 4 24 337 357 335 358 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF133-211 - 635 3.7e-14 52.6 33.3 7 14 0.026 24 5.3 0.3 2 24 363 385 362 386 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF133-211 - 635 3.7e-14 52.6 33.3 8 14 2 1.9e+03 -0.7 0.1 2 24 391 413 390 413 0.86 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF133-211 - 635 3.7e-14 52.6 33.3 9 14 0.57 5.4e+02 1.1 0.0 2 21 419 438 418 439 0.79 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF133-211 - 635 3.7e-14 52.6 33.3 10 14 0.0039 3.7 7.9 0.1 4 24 449 469 446 470 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF133-211 - 635 3.7e-14 52.6 33.3 11 14 0.013 13 6.3 0.1 4 24 477 497 476 498 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF133-211 - 635 3.7e-14 52.6 33.3 12 14 0.047 44 4.5 0.0 2 22 503 523 502 526 0.88 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF133-211 - 635 3.7e-14 52.6 33.3 13 14 0.1 98 3.4 0.0 2 22 531 551 530 551 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF133-211 - 635 3.7e-14 52.6 33.3 14 14 0.035 33 4.9 0.2 2 23 587 608 586 612 0.85 Zinc-finger double-stranded RNA-binding Zn-ribbon_8 PF09723.10 40 ZNF133-211 - 635 2e-09 37.4 61.5 1 13 0.053 50 4.1 0.5 8 34 197 230 194 236 0.80 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF133-211 - 635 2e-09 37.4 61.5 2 13 0.00089 0.84 9.8 0.7 6 35 223 259 222 264 0.83 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF133-211 - 635 2e-09 37.4 61.5 3 13 0.00059 0.56 10.4 2.7 6 34 279 314 277 318 0.88 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF133-211 - 635 2e-09 37.4 61.5 4 13 2.9e-05 0.027 14.6 0.8 6 33 307 341 306 347 0.90 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF133-211 - 635 2e-09 37.4 61.5 5 13 0.027 26 5.0 6.2 6 34 363 398 362 403 0.83 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF133-211 - 635 2e-09 37.4 61.5 6 13 0.0024 2.3 8.4 0.6 6 33 391 425 390 426 0.79 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF133-211 - 635 2e-09 37.4 61.5 7 13 0.00014 0.14 12.3 0.2 6 34 419 454 418 460 0.86 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF133-211 - 635 2e-09 37.4 61.5 8 13 0.0016 1.5 9.0 2.0 7 34 448 482 447 488 0.84 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF133-211 - 635 2e-09 37.4 61.5 9 13 0.012 11 6.2 3.2 7 34 476 510 473 515 0.84 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF133-211 - 635 2e-09 37.4 61.5 10 13 0.00027 0.26 11.5 1.2 6 33 503 537 502 539 0.84 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF133-211 - 635 2e-09 37.4 61.5 11 13 0.014 13 6.0 4.1 6 35 531 568 530 572 0.75 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF133-211 - 635 2e-09 37.4 61.5 12 13 0.0029 2.7 8.2 1.8 8 34 561 594 560 599 0.88 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF133-211 - 635 2e-09 37.4 61.5 13 13 0.02 19 5.5 0.1 6 18 587 599 586 610 0.76 Zinc ribbon domain zinc_ribbon_15 PF17032.5 86 ZNF133-211 - 635 1e-08 35.8 45.8 1 9 0.21 2e+02 2.8 0.3 38 73 195 230 184 236 0.86 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF133-211 - 635 1e-08 35.8 45.8 2 9 0.0027 2.5 8.9 1.9 32 77 217 262 195 266 0.86 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF133-211 - 635 1e-08 35.8 45.8 3 9 0.0011 1.1 10.1 0.8 35 78 276 319 267 322 0.84 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF133-211 - 635 1e-08 35.8 45.8 4 9 0.0035 3.3 8.5 4.8 35 76 332 373 322 405 0.66 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF133-211 - 635 1e-08 35.8 45.8 5 9 0.0082 7.7 7.3 0.2 32 74 385 427 375 434 0.84 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF133-211 - 635 1e-08 35.8 45.8 6 9 0.00072 0.68 10.7 2.0 37 79 446 488 437 516 0.66 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF133-211 - 635 1e-08 35.8 45.8 7 9 0.0027 2.6 8.9 0.4 35 73 500 538 490 545 0.85 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF133-211 - 635 1e-08 35.8 45.8 8 9 0.0053 5 8.0 2.7 33 74 527 567 519 575 0.84 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF133-211 - 635 1e-08 35.8 45.8 9 9 0.048 45 4.9 2.0 33 74 554 595 543 605 0.82 zinc-ribbon family zf-C2H2_11 PF16622.5 29 ZNF133-211 - 635 1e-07 31.6 81.8 1 15 0.004 3.8 7.4 0.4 4 26 194 216 192 217 0.82 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF133-211 - 635 1e-07 31.6 81.8 2 15 0.096 91 2.9 0.2 10 23 225 241 223 243 0.82 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF133-211 - 635 1e-07 31.6 81.8 3 15 0.085 81 3.1 0.1 7 14 253 260 251 269 0.88 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF133-211 - 635 1e-07 31.6 81.8 4 15 0.056 53 3.7 0.1 7 16 281 290 278 298 0.83 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF133-211 - 635 1e-07 31.6 81.8 5 15 0.021 20 5.0 0.1 7 23 309 325 306 328 0.88 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF133-211 - 635 1e-07 31.6 81.8 6 15 0.033 31 4.4 0.1 3 15 333 345 331 355 0.80 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF133-211 - 635 1e-07 31.6 81.8 7 15 0.0036 3.4 7.5 0.8 7 15 365 373 362 383 0.79 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF133-211 - 635 1e-07 31.6 81.8 8 15 1.3 1.2e+03 -0.7 0.7 7 24 393 410 391 412 0.74 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF133-211 - 635 1e-07 31.6 81.8 9 15 0.0029 2.8 7.8 1.1 7 26 421 440 419 441 0.91 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF133-211 - 635 1e-07 31.6 81.8 10 15 0.0011 1 9.2 0.2 7 24 449 466 447 468 0.93 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF133-211 - 635 1e-07 31.6 81.8 11 15 0.12 1.1e+02 2.7 0.1 7 17 477 487 475 495 0.79 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF133-211 - 635 1e-07 31.6 81.8 12 15 0.00018 0.17 11.7 0.8 7 23 505 521 503 523 0.93 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF133-211 - 635 1e-07 31.6 81.8 13 15 0.023 22 4.9 0.2 7 20 533 546 530 551 0.77 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF133-211 - 635 1e-07 31.6 81.8 14 15 0.22 2.1e+02 1.8 0.7 5 14 559 568 555 579 0.83 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF133-211 - 635 1e-07 31.6 81.8 15 15 0.00085 0.8 9.5 2.1 7 24 589 606 587 609 0.94 zinc-finger C2H2-type ADK_lid PF05191.14 36 ZNF133-211 - 635 6.3e-07 29.3 52.3 1 12 0.39 3.7e+02 1.2 0.4 4 27 197 228 195 235 0.55 Adenylate kinase, active site lid ADK_lid PF05191.14 36 ZNF133-211 - 635 6.3e-07 29.3 52.3 2 12 0.0004 0.38 10.8 1.0 3 33 252 290 251 292 0.77 Adenylate kinase, active site lid ADK_lid PF05191.14 36 ZNF133-211 - 635 6.3e-07 29.3 52.3 3 12 0.0011 1.1 9.4 0.7 3 33 280 318 279 321 0.71 Adenylate kinase, active site lid ADK_lid PF05191.14 36 ZNF133-211 - 635 6.3e-07 29.3 52.3 4 12 0.034 32 4.6 1.2 3 28 308 341 307 348 0.68 Adenylate kinase, active site lid ADK_lid PF05191.14 36 ZNF133-211 - 635 6.3e-07 29.3 52.3 5 12 0.036 34 4.5 1.4 3 34 336 375 335 376 0.67 Adenylate kinase, active site lid ADK_lid PF05191.14 36 ZNF133-211 - 635 6.3e-07 29.3 52.3 6 12 0.0075 7.1 6.7 2.3 4 33 365 402 363 404 0.77 Adenylate kinase, active site lid ADK_lid PF05191.14 36 ZNF133-211 - 635 6.3e-07 29.3 52.3 7 12 0.068 64 3.7 2.5 3 28 392 425 391 428 0.74 Adenylate kinase, active site lid ADK_lid PF05191.14 36 ZNF133-211 - 635 6.3e-07 29.3 52.3 8 12 0.086 81 3.3 0.2 3 14 420 431 418 441 0.80 Adenylate kinase, active site lid ADK_lid PF05191.14 36 ZNF133-211 - 635 6.3e-07 29.3 52.3 9 12 1.9e-05 0.018 15.0 0.5 3 33 448 486 447 488 0.69 Adenylate kinase, active site lid ADK_lid PF05191.14 36 ZNF133-211 - 635 6.3e-07 29.3 52.3 10 12 0.021 20 5.3 3.3 3 28 504 537 503 573 0.63 Adenylate kinase, active site lid ADK_lid PF05191.14 36 ZNF133-211 - 635 6.3e-07 29.3 52.3 11 12 0.65 6.2e+02 0.5 0.2 3 11 560 568 559 578 0.72 Adenylate kinase, active site lid ADK_lid PF05191.14 36 ZNF133-211 - 635 6.3e-07 29.3 52.3 12 12 0.0095 9 6.4 0.3 3 14 588 599 587 619 0.80 Adenylate kinase, active site lid # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF133-211.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF133-211.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF133-211.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF133-211.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF133-211.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:59:54 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-C2H2 PF00096.26 23 ZNF133-212 - 654 1e-81 265.1 103.7 1 15 2.5e-06 0.0023 18.3 0.3 3 23 216 236 214 236 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF133-212 - 654 1e-81 265.1 103.7 2 15 4.9e-06 0.0044 17.4 0.2 1 23 242 264 242 264 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF133-212 - 654 1e-81 265.1 103.7 3 15 3e-07 0.00027 21.2 0.2 2 23 271 292 270 292 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF133-212 - 654 1e-81 265.1 103.7 4 15 4.3e-09 3.9e-06 27.0 0.5 1 23 298 320 298 320 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF133-212 - 654 1e-81 265.1 103.7 5 15 1.7e-08 1.5e-05 25.1 0.4 1 23 326 348 326 348 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF133-212 - 654 1e-81 265.1 103.7 6 15 1.8e-08 1.6e-05 25.1 0.1 2 23 355 376 354 376 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF133-212 - 654 1e-81 265.1 103.7 7 15 1e-07 9.1e-05 22.7 3.5 1 23 382 404 382 404 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF133-212 - 654 1e-81 265.1 103.7 8 15 1.5e-08 1.4e-05 25.3 1.5 1 23 410 432 410 432 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF133-212 - 654 1e-81 265.1 103.7 9 15 5.1e-08 4.5e-05 23.7 0.7 1 23 438 460 438 460 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF133-212 - 654 1e-81 265.1 103.7 10 15 3.5e-10 3.1e-07 30.5 0.4 2 23 467 488 466 488 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF133-212 - 654 1e-81 265.1 103.7 11 15 4.1e-09 3.7e-06 27.1 0.2 2 23 495 516 494 516 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF133-212 - 654 1e-81 265.1 103.7 12 15 1.3e-07 0.00012 22.4 1.1 1 23 522 544 522 544 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF133-212 - 654 1e-81 265.1 103.7 13 15 3.5e-05 0.031 14.7 0.2 1 23 550 572 550 572 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF133-212 - 654 1e-81 265.1 103.7 14 15 0.00016 0.15 12.6 3.3 2 23 579 600 578 600 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF133-212 - 654 1e-81 265.1 103.7 15 15 2.2e-06 0.0019 18.5 2.6 1 22 606 627 606 631 0.94 Zinc finger, C2H2 type zf-H2C2_2 PF13465.6 26 ZNF133-212 - 654 7.3e-78 253.8 77.9 1 16 9.8 8.8e+03 -2.5 0.1 16 25 215 224 212 225 0.82 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF133-212 - 654 7.3e-78 253.8 77.9 2 16 2e-08 1.7e-05 25.0 0.1 1 25 228 252 228 252 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF133-212 - 654 7.3e-78 253.8 77.9 3 16 8.6e-07 0.00077 19.8 0.1 1 25 256 280 256 281 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF133-212 - 654 7.3e-78 253.8 77.9 4 16 9.5e-08 8.6e-05 22.8 0.1 5 25 288 308 285 309 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF133-212 - 654 7.3e-78 253.8 77.9 5 16 6.5e-09 5.8e-06 26.5 0.1 2 25 313 336 312 337 0.90 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF133-212 - 654 7.3e-78 253.8 77.9 6 16 9.2e-05 0.083 13.4 0.0 2 24 341 363 340 364 0.88 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF133-212 - 654 7.3e-78 253.8 77.9 7 16 1.5e-08 1.4e-05 25.3 1.4 1 24 368 391 368 393 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF133-212 - 654 7.3e-78 253.8 77.9 8 16 1.3e-07 0.00012 22.3 0.8 2 25 397 420 396 421 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF133-212 - 654 7.3e-78 253.8 77.9 9 16 1.9e-08 1.7e-05 25.0 0.1 3 24 426 447 425 448 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF133-212 - 654 7.3e-78 253.8 77.9 10 16 5.2e-08 4.7e-05 23.6 0.2 1 25 452 476 452 477 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF133-212 - 654 7.3e-78 253.8 77.9 11 16 3.8e-07 0.00034 20.9 0.0 1 25 480 504 480 505 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF133-212 - 654 7.3e-78 253.8 77.9 12 16 5.1e-09 4.6e-06 26.8 0.3 1 26 508 533 508 533 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF133-212 - 654 7.3e-78 253.8 77.9 13 16 5.3e-07 0.00048 20.4 0.4 2 25 537 560 536 561 0.90 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF133-212 - 654 7.3e-78 253.8 77.9 14 16 0.005 4.5 7.9 0.4 2 25 565 588 564 589 0.89 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF133-212 - 654 7.3e-78 253.8 77.9 15 16 3.9e-08 3.5e-05 24.0 0.6 1 24 592 615 592 617 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF133-212 - 654 7.3e-78 253.8 77.9 16 16 3.4 3e+03 -1.1 1.9 2 12 617 627 616 638 0.67 Zinc-finger double domain zf-C2H2_4 PF13894.6 24 ZNF133-212 - 654 3.1e-49 161.4 101.4 1 16 2.3 2e+03 0.1 0.3 4 14 83 93 83 103 0.68 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF133-212 - 654 3.1e-49 161.4 101.4 2 16 0.00061 0.55 11.2 0.3 2 23 215 236 214 237 0.91 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF133-212 - 654 3.1e-49 161.4 101.4 3 16 8.1e-06 0.0073 17.1 0.4 1 23 242 264 242 265 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF133-212 - 654 3.1e-49 161.4 101.4 4 16 3e-05 0.027 15.3 0.1 2 23 271 292 270 293 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF133-212 - 654 3.1e-49 161.4 101.4 5 16 6.7e-06 0.006 17.3 0.4 1 23 298 320 298 321 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF133-212 - 654 3.1e-49 161.4 101.4 6 16 4.9e-06 0.0044 17.8 0.5 1 23 326 348 326 349 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF133-212 - 654 3.1e-49 161.4 101.4 7 16 5e-05 0.045 14.6 0.1 2 23 355 376 354 377 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF133-212 - 654 3.1e-49 161.4 101.4 8 16 1.9e-05 0.017 15.9 2.6 1 23 382 404 382 405 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF133-212 - 654 3.1e-49 161.4 101.4 9 16 4.5e-05 0.04 14.8 1.1 1 23 410 432 410 433 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF133-212 - 654 3.1e-49 161.4 101.4 10 16 1.9e-05 0.017 15.9 0.7 1 23 438 460 438 461 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF133-212 - 654 3.1e-49 161.4 101.4 11 16 3.5e-06 0.0032 18.2 0.3 2 23 467 488 466 489 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF133-212 - 654 3.1e-49 161.4 101.4 12 16 2.6e-05 0.023 15.5 0.2 3 23 496 516 495 517 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF133-212 - 654 3.1e-49 161.4 101.4 13 16 1.6e-05 0.014 16.2 1.0 1 23 522 544 522 545 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF133-212 - 654 3.1e-49 161.4 101.4 14 16 2.5e-05 0.022 15.6 0.2 1 23 550 572 550 573 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF133-212 - 654 3.1e-49 161.4 101.4 15 16 0.0085 7.6 7.7 3.0 2 23 579 600 578 601 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF133-212 - 654 3.1e-49 161.4 101.4 16 16 6.5e-05 0.058 14.3 1.4 1 22 606 627 606 629 0.93 C2H2-type zinc finger KRAB PF01352.27 42 ZNF133-212 - 654 1.3e-24 85.6 0.2 1 1 2.6e-27 2.3e-24 84.8 0.2 2 42 1 41 1 41 0.98 KRAB box zf-C2H2_jaz PF12171.8 27 ZNF133-212 - 654 5.7e-14 52.0 33.3 1 14 0.21 1.8e+02 2.5 0.0 3 22 215 234 214 234 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF133-212 - 654 5.7e-14 52.0 33.3 2 14 0.044 40 4.7 0.0 2 22 242 262 241 262 0.86 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF133-212 - 654 5.7e-14 52.0 33.3 3 14 0.0062 5.6 7.4 0.0 4 24 272 292 269 293 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF133-212 - 654 5.7e-14 52.0 33.3 4 14 0.019 17 5.8 0.1 2 24 298 320 297 321 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF133-212 - 654 5.7e-14 52.0 33.3 5 14 0.015 13 6.2 0.0 2 24 326 348 325 349 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF133-212 - 654 5.7e-14 52.0 33.3 6 14 0.087 78 3.7 0.1 4 24 356 376 354 377 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF133-212 - 654 5.7e-14 52.0 33.3 7 14 0.028 25 5.3 0.3 2 24 382 404 381 405 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF133-212 - 654 5.7e-14 52.0 33.3 8 14 2.1 1.9e+03 -0.7 0.1 2 24 410 432 409 432 0.86 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF133-212 - 654 5.7e-14 52.0 33.3 9 14 0.62 5.6e+02 1.0 0.0 2 21 438 457 437 458 0.79 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF133-212 - 654 5.7e-14 52.0 33.3 10 14 0.0043 3.8 7.9 0.1 4 24 468 488 465 489 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF133-212 - 654 5.7e-14 52.0 33.3 11 14 0.015 13 6.2 0.1 4 24 496 516 495 517 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF133-212 - 654 5.7e-14 52.0 33.3 12 14 0.051 45 4.5 0.0 2 22 522 542 521 545 0.88 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF133-212 - 654 5.7e-14 52.0 33.3 13 14 0.11 1e+02 3.4 0.0 2 22 550 570 549 570 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF133-212 - 654 5.7e-14 52.0 33.3 14 14 0.038 34 4.9 0.2 2 23 606 627 605 631 0.85 Zinc-finger double-stranded RNA-binding Zn-ribbon_8 PF09723.10 40 ZNF133-212 - 654 2.9e-09 36.9 61.7 1 14 0.057 51 4.1 0.5 8 34 216 249 213 255 0.80 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF133-212 - 654 2.9e-09 36.9 61.7 2 14 0.00099 0.89 9.7 0.8 6 35 242 278 241 283 0.83 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF133-212 - 654 2.9e-09 36.9 61.7 3 14 0.0059 5.2 7.3 2.7 7 34 271 305 270 310 0.79 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF133-212 - 654 2.9e-09 36.9 61.7 4 14 0.064 57 3.9 0.2 6 16 298 308 296 323 0.83 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF133-212 - 654 2.9e-09 36.9 61.7 5 14 3.3e-05 0.029 14.5 0.9 6 33 326 360 325 366 0.90 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF133-212 - 654 2.9e-09 36.9 61.7 6 14 0.033 30 4.8 6.2 6 34 382 417 381 421 0.83 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF133-212 - 654 2.9e-09 36.9 61.7 7 14 0.0027 2.4 8.3 0.7 6 33 410 444 409 445 0.78 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF133-212 - 654 2.9e-09 36.9 61.7 8 14 0.00016 0.14 12.3 0.2 6 34 438 473 437 479 0.86 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF133-212 - 654 2.9e-09 36.9 61.7 9 14 0.0017 1.5 9.0 1.9 7 34 467 501 466 507 0.84 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF133-212 - 654 2.9e-09 36.9 61.7 10 14 0.011 10 6.4 2.9 7 34 495 529 492 534 0.84 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF133-212 - 654 2.9e-09 36.9 61.7 11 14 0.00027 0.25 11.5 1.1 6 33 522 556 521 559 0.84 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF133-212 - 654 2.9e-09 36.9 61.7 12 14 0.016 14 5.9 4.1 6 35 550 587 549 591 0.75 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF133-212 - 654 2.9e-09 36.9 61.7 13 14 0.0029 2.6 8.2 1.8 8 34 580 613 579 620 0.88 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF133-212 - 654 2.9e-09 36.9 61.7 14 14 0.022 20 5.4 0.1 6 18 606 618 605 629 0.76 Zinc ribbon domain zinc_ribbon_15 PF17032.5 86 ZNF133-212 - 654 7.7e-09 36.2 45.1 1 7 0.0022 2 9.2 1.6 32 77 236 281 214 288 0.86 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF133-212 - 654 7.7e-09 36.2 45.1 2 7 0.00096 0.86 10.4 0.7 35 78 295 338 284 344 0.84 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF133-212 - 654 7.7e-09 36.2 45.1 3 7 0.00046 0.41 11.4 1.2 34 75 350 391 341 398 0.86 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF133-212 - 654 7.7e-09 36.2 45.1 4 7 0.0077 6.9 7.5 1.5 32 74 432 474 394 481 0.53 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF133-212 - 654 7.7e-09 36.2 45.1 5 7 0.00039 0.35 11.7 0.4 33 79 461 507 455 512 0.87 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF133-212 - 654 7.7e-09 36.2 45.1 6 7 0.00078 0.7 10.7 0.2 31 77 487 533 480 537 0.85 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF133-212 - 654 7.7e-09 36.2 45.1 7 7 0.11 1e+02 3.8 7.6 33 73 546 585 509 622 0.75 zinc-ribbon family zf-C2H2_11 PF16622.5 29 ZNF133-212 - 654 1.6e-07 30.9 81.8 1 15 0.0044 3.9 7.3 0.4 4 26 213 235 211 236 0.82 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF133-212 - 654 1.6e-07 30.9 81.8 2 15 0.1 94 2.9 0.2 10 23 244 260 242 262 0.82 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF133-212 - 654 1.6e-07 30.9 81.8 3 15 0.093 83 3.1 0.1 7 14 272 279 270 288 0.88 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF133-212 - 654 1.6e-07 30.9 81.8 4 15 0.061 55 3.6 0.1 7 16 300 309 297 317 0.83 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF133-212 - 654 1.6e-07 30.9 81.8 5 15 0.023 21 5.0 0.1 7 23 328 344 325 347 0.88 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF133-212 - 654 1.6e-07 30.9 81.8 6 15 0.036 33 4.4 0.1 3 15 352 364 350 374 0.80 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF133-212 - 654 1.6e-07 30.9 81.8 7 15 0.0039 3.5 7.5 0.8 7 15 384 392 381 402 0.79 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF133-212 - 654 1.6e-07 30.9 81.8 8 15 1.4 1.3e+03 -0.7 0.7 7 24 412 429 410 431 0.74 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF133-212 - 654 1.6e-07 30.9 81.8 9 15 0.0032 2.9 7.8 1.1 7 26 440 459 438 460 0.91 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF133-212 - 654 1.6e-07 30.9 81.8 10 15 0.0012 1.1 9.1 0.2 7 24 468 485 466 487 0.93 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF133-212 - 654 1.6e-07 30.9 81.8 11 15 0.13 1.1e+02 2.6 0.1 7 17 496 506 494 514 0.79 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF133-212 - 654 1.6e-07 30.9 81.8 12 15 0.00019 0.17 11.6 0.8 7 23 524 540 522 542 0.93 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF133-212 - 654 1.6e-07 30.9 81.8 13 15 0.025 23 4.9 0.2 7 20 552 565 549 570 0.77 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF133-212 - 654 1.6e-07 30.9 81.8 14 15 0.24 2.2e+02 1.7 0.7 5 14 578 587 574 598 0.83 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF133-212 - 654 1.6e-07 30.9 81.8 15 15 0.00092 0.83 9.5 2.1 7 24 608 625 606 628 0.94 zinc-finger C2H2-type ADK_lid PF05191.14 36 ZNF133-212 - 654 4.8e-07 29.7 51.5 1 12 0.43 3.8e+02 1.2 0.4 4 27 216 247 214 254 0.55 Adenylate kinase, active site lid ADK_lid PF05191.14 36 ZNF133-212 - 654 4.8e-07 29.7 51.5 2 12 0.00045 0.41 10.7 1.0 3 33 271 309 270 311 0.77 Adenylate kinase, active site lid ADK_lid PF05191.14 36 ZNF133-212 - 654 4.8e-07 29.7 51.5 3 12 0.0013 1.2 9.2 0.8 3 33 299 337 298 339 0.70 Adenylate kinase, active site lid ADK_lid PF05191.14 36 ZNF133-212 - 654 4.8e-07 29.7 51.5 4 12 0.034 30 4.7 1.1 3 28 327 360 325 367 0.69 Adenylate kinase, active site lid ADK_lid PF05191.14 36 ZNF133-212 - 654 4.8e-07 29.7 51.5 5 12 0.037 33 4.6 1.3 3 34 355 394 354 395 0.67 Adenylate kinase, active site lid ADK_lid PF05191.14 36 ZNF133-212 - 654 4.8e-07 29.7 51.5 6 12 0.0073 6.5 6.8 2.1 4 33 384 421 382 423 0.77 Adenylate kinase, active site lid ADK_lid PF05191.14 36 ZNF133-212 - 654 4.8e-07 29.7 51.5 7 12 0.054 48 4.0 2.3 3 28 411 444 410 451 0.72 Adenylate kinase, active site lid ADK_lid PF05191.14 36 ZNF133-212 - 654 4.8e-07 29.7 51.5 8 12 0.094 85 3.3 0.2 3 14 439 450 438 460 0.80 Adenylate kinase, active site lid ADK_lid PF05191.14 36 ZNF133-212 - 654 4.8e-07 29.7 51.5 9 12 2.1e-05 0.019 15.0 0.5 3 33 467 505 466 507 0.69 Adenylate kinase, active site lid ADK_lid PF05191.14 36 ZNF133-212 - 654 4.8e-07 29.7 51.5 10 12 0.015 13 5.8 2.7 3 28 523 556 522 591 0.63 Adenylate kinase, active site lid ADK_lid PF05191.14 36 ZNF133-212 - 654 4.8e-07 29.7 51.5 11 12 0.65 5.8e+02 0.6 0.2 3 11 579 587 578 598 0.72 Adenylate kinase, active site lid ADK_lid PF05191.14 36 ZNF133-212 - 654 4.8e-07 29.7 51.5 12 12 0.01 9.3 6.3 0.3 3 14 607 618 606 638 0.80 Adenylate kinase, active site lid # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF133-212.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF133-212.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF133-212.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF133-212.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF133-212.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:59:54 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- KRAB PF01352.27 42 ZNF133-213 - 47 1.2e-26 92.1 0.2 1 1 7.4e-31 1.3e-26 91.9 0.2 2 42 1 41 1 41 0.98 KRAB box # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF133-213.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF133-213.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF133-213.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF133-213.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF133-213.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:59:55 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-C2H2 PF00096.26 23 ZNF133-214 - 657 1.1e-81 265.0 103.7 1 15 2.5e-06 0.0023 18.3 0.3 3 23 219 239 217 239 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF133-214 - 657 1.1e-81 265.0 103.7 2 15 4.9e-06 0.0044 17.4 0.2 1 23 245 267 245 267 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF133-214 - 657 1.1e-81 265.0 103.7 3 15 3e-07 0.00027 21.2 0.2 2 23 274 295 273 295 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF133-214 - 657 1.1e-81 265.0 103.7 4 15 4.3e-09 3.9e-06 27.0 0.5 1 23 301 323 301 323 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF133-214 - 657 1.1e-81 265.0 103.7 5 15 1.7e-08 1.5e-05 25.1 0.4 1 23 329 351 329 351 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF133-214 - 657 1.1e-81 265.0 103.7 6 15 1.8e-08 1.6e-05 25.1 0.1 2 23 358 379 357 379 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF133-214 - 657 1.1e-81 265.0 103.7 7 15 1e-07 9.1e-05 22.7 3.5 1 23 385 407 385 407 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF133-214 - 657 1.1e-81 265.0 103.7 8 15 1.5e-08 1.4e-05 25.3 1.5 1 23 413 435 413 435 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF133-214 - 657 1.1e-81 265.0 103.7 9 15 5.1e-08 4.6e-05 23.6 0.7 1 23 441 463 441 463 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF133-214 - 657 1.1e-81 265.0 103.7 10 15 3.5e-10 3.1e-07 30.5 0.4 2 23 470 491 469 491 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF133-214 - 657 1.1e-81 265.0 103.7 11 15 4.1e-09 3.7e-06 27.1 0.2 2 23 498 519 497 519 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF133-214 - 657 1.1e-81 265.0 103.7 12 15 1.3e-07 0.00012 22.4 1.1 1 23 525 547 525 547 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF133-214 - 657 1.1e-81 265.0 103.7 13 15 3.5e-05 0.031 14.7 0.2 1 23 553 575 553 575 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF133-214 - 657 1.1e-81 265.0 103.7 14 15 0.00016 0.15 12.6 3.3 2 23 582 603 581 603 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF133-214 - 657 1.1e-81 265.0 103.7 15 15 2.2e-06 0.0019 18.5 2.6 1 22 609 630 609 634 0.94 Zinc finger, C2H2 type zf-H2C2_2 PF13465.6 26 ZNF133-214 - 657 7.8e-78 253.7 77.9 1 16 9.8 8.8e+03 -2.5 0.1 16 25 218 227 215 228 0.82 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF133-214 - 657 7.8e-78 253.7 77.9 2 16 2e-08 1.8e-05 25.0 0.1 1 25 231 255 231 255 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF133-214 - 657 7.8e-78 253.7 77.9 3 16 8.7e-07 0.00078 19.8 0.1 1 25 259 283 259 284 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF133-214 - 657 7.8e-78 253.7 77.9 4 16 9.6e-08 8.6e-05 22.8 0.1 5 25 291 311 288 312 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF133-214 - 657 7.8e-78 253.7 77.9 5 16 6.5e-09 5.9e-06 26.5 0.1 2 25 316 339 315 340 0.90 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF133-214 - 657 7.8e-78 253.7 77.9 6 16 9.3e-05 0.083 13.4 0.0 2 24 344 366 343 367 0.88 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF133-214 - 657 7.8e-78 253.7 77.9 7 16 1.5e-08 1.4e-05 25.3 1.4 1 24 371 394 371 396 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF133-214 - 657 7.8e-78 253.7 77.9 8 16 1.4e-07 0.00012 22.3 0.8 2 25 400 423 399 424 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF133-214 - 657 7.8e-78 253.7 77.9 9 16 1.9e-08 1.7e-05 25.0 0.1 3 24 429 450 428 451 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF133-214 - 657 7.8e-78 253.7 77.9 10 16 5.3e-08 4.7e-05 23.6 0.2 1 25 455 479 455 480 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF133-214 - 657 7.8e-78 253.7 77.9 11 16 3.8e-07 0.00034 20.9 0.0 1 25 483 507 483 508 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF133-214 - 657 7.8e-78 253.7 77.9 12 16 5.2e-09 4.6e-06 26.8 0.3 1 26 511 536 511 536 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF133-214 - 657 7.8e-78 253.7 77.9 13 16 5.4e-07 0.00048 20.4 0.4 2 25 540 563 539 564 0.90 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF133-214 - 657 7.8e-78 253.7 77.9 14 16 0.0051 4.5 7.9 0.4 2 25 568 591 567 592 0.89 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF133-214 - 657 7.8e-78 253.7 77.9 15 16 3.9e-08 3.5e-05 24.0 0.6 1 24 595 618 595 620 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF133-214 - 657 7.8e-78 253.7 77.9 16 16 3.4 3e+03 -1.1 1.9 2 12 620 630 619 641 0.67 Zinc-finger double domain zf-C2H2_4 PF13894.6 24 ZNF133-214 - 657 3.3e-49 161.3 101.4 1 16 2.3 2e+03 0.1 0.3 4 14 86 96 86 106 0.68 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF133-214 - 657 3.3e-49 161.3 101.4 2 16 0.00062 0.55 11.2 0.3 2 23 218 239 217 240 0.91 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF133-214 - 657 3.3e-49 161.3 101.4 3 16 8.1e-06 0.0073 17.1 0.4 1 23 245 267 245 268 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF133-214 - 657 3.3e-49 161.3 101.4 4 16 3.1e-05 0.027 15.3 0.1 2 23 274 295 273 296 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF133-214 - 657 3.3e-49 161.3 101.4 5 16 6.8e-06 0.0061 17.3 0.4 1 23 301 323 301 324 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF133-214 - 657 3.3e-49 161.3 101.4 6 16 4.9e-06 0.0044 17.7 0.5 1 23 329 351 329 352 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF133-214 - 657 3.3e-49 161.3 101.4 7 16 5e-05 0.045 14.6 0.1 2 23 358 379 357 380 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF133-214 - 657 3.3e-49 161.3 101.4 8 16 2e-05 0.018 15.9 2.6 1 23 385 407 385 408 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF133-214 - 657 3.3e-49 161.3 101.4 9 16 4.5e-05 0.04 14.8 1.1 1 23 413 435 413 436 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF133-214 - 657 3.3e-49 161.3 101.4 10 16 1.9e-05 0.017 15.9 0.7 1 23 441 463 441 464 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF133-214 - 657 3.3e-49 161.3 101.4 11 16 3.6e-06 0.0032 18.2 0.3 2 23 470 491 469 492 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF133-214 - 657 3.3e-49 161.3 101.4 12 16 2.6e-05 0.023 15.5 0.2 3 23 499 519 498 520 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF133-214 - 657 3.3e-49 161.3 101.4 13 16 1.6e-05 0.014 16.1 1.0 1 23 525 547 525 548 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF133-214 - 657 3.3e-49 161.3 101.4 14 16 2.5e-05 0.022 15.6 0.2 1 23 553 575 553 576 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF133-214 - 657 3.3e-49 161.3 101.4 15 16 0.0085 7.6 7.7 3.0 2 23 582 603 581 604 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF133-214 - 657 3.3e-49 161.3 101.4 16 16 6.5e-05 0.058 14.2 1.4 1 22 609 630 609 632 0.93 C2H2-type zinc finger KRAB PF01352.27 42 ZNF133-214 - 657 9e-25 86.1 0.1 1 1 1.8e-27 1.6e-24 85.2 0.1 2 42 4 44 3 44 0.98 KRAB box zf-C2H2_jaz PF12171.8 27 ZNF133-214 - 657 6.1e-14 51.9 33.3 1 14 0.21 1.9e+02 2.5 0.0 3 22 218 237 217 237 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF133-214 - 657 6.1e-14 51.9 33.3 2 14 0.044 40 4.7 0.0 2 22 245 265 244 265 0.86 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF133-214 - 657 6.1e-14 51.9 33.3 3 14 0.0062 5.6 7.4 0.0 4 24 275 295 272 296 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF133-214 - 657 6.1e-14 51.9 33.3 4 14 0.019 17 5.8 0.1 2 24 301 323 300 324 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF133-214 - 657 6.1e-14 51.9 33.3 5 14 0.015 13 6.2 0.0 2 24 329 351 328 352 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF133-214 - 657 6.1e-14 51.9 33.3 6 14 0.088 78 3.7 0.1 4 24 359 379 357 380 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF133-214 - 657 6.1e-14 51.9 33.3 7 14 0.028 25 5.3 0.3 2 24 385 407 384 408 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF133-214 - 657 6.1e-14 51.9 33.3 8 14 2.2 1.9e+03 -0.7 0.1 2 24 413 435 412 435 0.86 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF133-214 - 657 6.1e-14 51.9 33.3 9 14 0.63 5.6e+02 1.0 0.0 2 21 441 460 440 461 0.79 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF133-214 - 657 6.1e-14 51.9 33.3 10 14 0.0043 3.9 7.9 0.1 4 24 471 491 468 492 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF133-214 - 657 6.1e-14 51.9 33.3 11 14 0.015 13 6.2 0.1 4 24 499 519 498 520 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF133-214 - 657 6.1e-14 51.9 33.3 12 14 0.051 46 4.5 0.0 2 22 525 545 524 548 0.88 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF133-214 - 657 6.1e-14 51.9 33.3 13 14 0.11 1e+02 3.4 0.0 2 22 553 573 552 573 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF133-214 - 657 6.1e-14 51.9 33.3 14 14 0.038 34 4.9 0.2 2 23 609 630 608 634 0.85 Zinc-finger double-stranded RNA-binding Zn-ribbon_8 PF09723.10 40 ZNF133-214 - 657 2.6e-09 37.0 61.5 1 14 0.058 52 4.1 0.5 8 34 219 252 216 258 0.80 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF133-214 - 657 2.6e-09 37.0 61.5 2 14 0.001 0.89 9.7 0.8 6 35 245 281 244 286 0.83 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF133-214 - 657 2.6e-09 37.0 61.5 3 14 0.0059 5.3 7.3 2.7 7 34 274 308 273 313 0.79 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF133-214 - 657 2.6e-09 37.0 61.5 4 14 0.064 57 3.9 0.2 6 16 301 311 299 326 0.83 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF133-214 - 657 2.6e-09 37.0 61.5 5 14 3.3e-05 0.029 14.5 0.9 6 33 329 363 328 369 0.90 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF133-214 - 657 2.6e-09 37.0 61.5 6 14 0.032 29 4.9 6.2 6 34 385 420 384 424 0.83 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF133-214 - 657 2.6e-09 37.0 61.5 7 14 0.002 1.8 8.7 0.5 6 33 413 447 412 450 0.79 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF133-214 - 657 2.6e-09 37.0 61.5 8 14 0.00016 0.14 12.3 0.2 6 34 441 476 440 482 0.86 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF133-214 - 657 2.6e-09 37.0 61.5 9 14 0.0015 1.4 9.1 1.8 7 34 470 504 469 510 0.84 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF133-214 - 657 2.6e-09 37.0 61.5 10 14 0.01 9.3 6.5 2.8 7 34 498 532 495 537 0.84 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF133-214 - 657 2.6e-09 37.0 61.5 11 14 0.00028 0.25 11.5 1.2 6 33 525 559 524 562 0.84 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF133-214 - 657 2.6e-09 37.0 61.5 12 14 0.016 15 5.8 4.2 6 35 553 590 552 594 0.75 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF133-214 - 657 2.6e-09 37.0 61.5 13 14 0.0031 2.7 8.2 1.8 8 34 583 616 582 621 0.88 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF133-214 - 657 2.6e-09 37.0 61.5 14 14 0.022 20 5.4 0.1 6 18 609 621 608 632 0.76 Zinc ribbon domain zinc_ribbon_15 PF17032.5 86 ZNF133-214 - 657 1.2e-08 35.6 45.7 1 9 0.0027 2.5 8.9 1.9 32 77 239 284 217 291 0.86 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF133-214 - 657 1.2e-08 35.6 45.7 2 9 0.001 0.93 10.3 0.7 35 78 298 341 288 346 0.84 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF133-214 - 657 1.2e-08 35.6 45.7 3 9 0.00047 0.42 11.4 1.3 34 75 353 394 343 400 0.86 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF133-214 - 657 1.2e-08 35.6 45.7 4 9 0.013 11 6.8 2.1 32 73 435 476 395 483 0.52 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF133-214 - 657 1.2e-08 35.6 45.7 5 9 0.00038 0.34 11.7 0.4 33 79 464 510 458 515 0.87 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF133-214 - 657 1.2e-08 35.6 45.7 6 9 0.0008 0.72 10.6 0.3 31 77 490 536 481 540 0.85 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF133-214 - 657 1.2e-08 35.6 45.7 7 9 0.0027 2.4 8.9 0.3 35 73 522 560 512 568 0.85 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF133-214 - 657 1.2e-08 35.6 45.7 8 9 0.0031 2.8 8.8 1.9 33 74 549 589 540 598 0.84 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF133-214 - 657 1.2e-08 35.6 45.7 9 9 0.045 41 5.0 1.8 33 74 576 617 567 627 0.82 zinc-ribbon family zf-C2H2_11 PF16622.5 29 ZNF133-214 - 657 1.7e-07 30.8 81.8 1 15 0.0044 3.9 7.3 0.4 4 26 216 238 214 239 0.82 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF133-214 - 657 1.7e-07 30.8 81.8 2 15 0.11 95 2.9 0.2 10 23 247 263 245 265 0.82 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF133-214 - 657 1.7e-07 30.8 81.8 3 15 0.093 84 3.1 0.1 7 14 275 282 273 291 0.88 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF133-214 - 657 1.7e-07 30.8 81.8 4 15 0.062 55 3.6 0.1 7 16 303 312 300 320 0.83 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF133-214 - 657 1.7e-07 30.8 81.8 5 15 0.023 21 5.0 0.1 7 23 331 347 328 350 0.88 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF133-214 - 657 1.7e-07 30.8 81.8 6 15 0.036 33 4.4 0.1 3 15 355 367 353 377 0.80 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF133-214 - 657 1.7e-07 30.8 81.8 7 15 0.0039 3.5 7.5 0.8 7 15 387 395 384 405 0.79 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF133-214 - 657 1.7e-07 30.8 81.8 8 15 1.4 1.3e+03 -0.7 0.7 7 24 415 432 413 434 0.74 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF133-214 - 657 1.7e-07 30.8 81.8 9 15 0.0032 2.9 7.7 1.1 7 26 443 462 441 463 0.91 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF133-214 - 657 1.7e-07 30.8 81.8 10 15 0.0012 1.1 9.1 0.2 7 24 471 488 469 490 0.93 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF133-214 - 657 1.7e-07 30.8 81.8 11 15 0.13 1.1e+02 2.6 0.1 7 17 499 509 497 517 0.79 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF133-214 - 657 1.7e-07 30.8 81.8 12 15 0.00019 0.17 11.6 0.8 7 23 527 543 525 545 0.93 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF133-214 - 657 1.7e-07 30.8 81.8 13 15 0.025 23 4.9 0.2 7 20 555 568 552 573 0.77 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF133-214 - 657 1.7e-07 30.8 81.8 14 15 0.25 2.2e+02 1.7 0.7 5 14 581 590 577 601 0.83 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF133-214 - 657 1.7e-07 30.8 81.8 15 15 0.00093 0.83 9.5 2.1 7 24 611 628 609 631 0.94 zinc-finger C2H2-type ADK_lid PF05191.14 36 ZNF133-214 - 657 3.7e-07 30.0 51.1 1 12 0.43 3.9e+02 1.2 0.4 4 27 219 250 217 257 0.55 Adenylate kinase, active site lid ADK_lid PF05191.14 36 ZNF133-214 - 657 3.7e-07 30.0 51.1 2 12 0.00045 0.4 10.7 1.0 3 33 274 312 273 314 0.77 Adenylate kinase, active site lid ADK_lid PF05191.14 36 ZNF133-214 - 657 3.7e-07 30.0 51.1 3 12 0.0013 1.2 9.2 0.8 3 33 302 340 301 342 0.70 Adenylate kinase, active site lid ADK_lid PF05191.14 36 ZNF133-214 - 657 3.7e-07 30.0 51.1 4 12 0.033 30 4.7 1.0 3 28 330 363 328 370 0.69 Adenylate kinase, active site lid ADK_lid PF05191.14 36 ZNF133-214 - 657 3.7e-07 30.0 51.1 5 12 0.036 32 4.6 1.2 3 34 358 397 357 398 0.67 Adenylate kinase, active site lid ADK_lid PF05191.14 36 ZNF133-214 - 657 3.7e-07 30.0 51.1 6 12 0.0067 6 6.9 2.0 4 33 387 424 385 426 0.77 Adenylate kinase, active site lid ADK_lid PF05191.14 36 ZNF133-214 - 657 3.7e-07 30.0 51.1 7 12 0.069 62 3.7 2.4 3 28 414 447 413 450 0.74 Adenylate kinase, active site lid ADK_lid PF05191.14 36 ZNF133-214 - 657 3.7e-07 30.0 51.1 8 12 0.095 85 3.3 0.2 3 14 442 453 441 463 0.80 Adenylate kinase, active site lid ADK_lid PF05191.14 36 ZNF133-214 - 657 3.7e-07 30.0 51.1 9 12 2.1e-05 0.019 15.0 0.5 3 33 470 508 469 510 0.69 Adenylate kinase, active site lid ADK_lid PF05191.14 36 ZNF133-214 - 657 3.7e-07 30.0 51.1 10 12 0.015 14 5.8 2.7 3 28 526 559 525 594 0.63 Adenylate kinase, active site lid ADK_lid PF05191.14 36 ZNF133-214 - 657 3.7e-07 30.0 51.1 11 12 0.66 5.9e+02 0.6 0.2 3 11 582 590 581 601 0.72 Adenylate kinase, active site lid ADK_lid PF05191.14 36 ZNF133-214 - 657 3.7e-07 30.0 51.1 12 12 0.01 9.3 6.3 0.3 3 14 610 621 609 641 0.80 Adenylate kinase, active site lid # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF133-214.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF133-214.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF133-214.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF133-214.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF133-214.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:59:55 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-C2H2 PF00096.26 23 ZNF133-215 - 559 7.8e-84 271.7 99.8 1 15 2.3e-06 0.0019 18.6 0.3 3 23 121 141 119 141 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF133-215 - 559 7.8e-84 271.7 99.8 2 15 4.5e-06 0.0036 17.7 0.2 1 23 147 169 147 169 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF133-215 - 559 7.8e-84 271.7 99.8 3 15 2.8e-07 0.00022 21.5 0.2 2 23 176 197 175 197 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF133-215 - 559 7.8e-84 271.7 99.8 4 15 3.9e-09 3.2e-06 27.3 0.5 1 23 203 225 203 225 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF133-215 - 559 7.8e-84 271.7 99.8 5 15 1.6e-08 1.3e-05 25.4 0.4 1 23 231 253 231 253 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF133-215 - 559 7.8e-84 271.7 99.8 6 15 1.6e-08 1.3e-05 25.3 0.1 2 23 260 281 259 281 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF133-215 - 559 7.8e-84 271.7 99.8 7 15 9.3e-08 7.6e-05 23.0 3.5 1 23 287 309 287 309 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF133-215 - 559 7.8e-84 271.7 99.8 8 15 1.4e-08 1.1e-05 25.6 1.5 1 23 315 337 315 337 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF133-215 - 559 7.8e-84 271.7 99.8 9 15 4.6e-08 3.8e-05 23.9 0.7 1 23 343 365 343 365 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF133-215 - 559 7.8e-84 271.7 99.8 10 15 3.2e-10 2.6e-07 30.7 0.4 2 23 372 393 371 393 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF133-215 - 559 7.8e-84 271.7 99.8 11 15 3.7e-09 3e-06 27.4 0.2 2 23 400 421 399 421 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF133-215 - 559 7.8e-84 271.7 99.8 12 15 1.2e-07 9.7e-05 22.6 1.1 1 23 427 449 427 449 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF133-215 - 559 7.8e-84 271.7 99.8 13 15 3.2e-05 0.026 15.0 0.2 1 23 455 477 455 477 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF133-215 - 559 7.8e-84 271.7 99.8 14 15 0.00015 0.12 12.9 3.3 2 23 484 505 483 505 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF133-215 - 559 7.8e-84 271.7 99.8 15 15 2e-06 0.0016 18.8 2.6 1 22 511 532 511 536 0.94 Zinc finger, C2H2 type zf-H2C2_2 PF13465.6 26 ZNF133-215 - 559 6.3e-79 257.2 78.0 1 16 9 7.4e+03 -2.3 0.1 16 25 120 129 117 130 0.82 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF133-215 - 559 6.3e-79 257.2 78.0 2 16 1.8e-08 1.5e-05 25.2 0.1 1 25 133 157 133 157 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF133-215 - 559 6.3e-79 257.2 78.0 3 16 7.9e-07 0.00064 20.0 0.1 1 25 161 185 161 186 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF133-215 - 559 6.3e-79 257.2 78.0 4 16 8.7e-08 7.1e-05 23.1 0.1 5 25 193 213 190 214 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF133-215 - 559 6.3e-79 257.2 78.0 5 16 6e-09 4.9e-06 26.7 0.1 2 25 218 241 217 242 0.90 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF133-215 - 559 6.3e-79 257.2 78.0 6 16 8.4e-05 0.069 13.6 0.0 2 24 246 268 245 269 0.88 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF133-215 - 559 6.3e-79 257.2 78.0 7 16 1.4e-08 1.1e-05 25.6 1.4 1 24 273 296 273 298 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF133-215 - 559 6.3e-79 257.2 78.0 8 16 1.2e-07 0.0001 22.6 0.8 2 25 302 325 301 326 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF133-215 - 559 6.3e-79 257.2 78.0 9 16 1.8e-08 1.4e-05 25.2 0.1 3 24 331 352 330 353 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF133-215 - 559 6.3e-79 257.2 78.0 10 16 4.8e-08 3.9e-05 23.9 0.2 1 25 357 381 357 382 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF133-215 - 559 6.3e-79 257.2 78.0 11 16 3.5e-07 0.00028 21.2 0.0 1 25 385 409 385 410 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF133-215 - 559 6.3e-79 257.2 78.0 12 16 4.7e-09 3.8e-06 27.1 0.3 1 26 413 438 413 438 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF133-215 - 559 6.3e-79 257.2 78.0 13 16 4.9e-07 0.0004 20.7 0.4 2 25 442 465 441 466 0.90 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF133-215 - 559 6.3e-79 257.2 78.0 14 16 0.0046 3.7 8.1 0.4 2 25 470 493 469 494 0.89 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF133-215 - 559 6.3e-79 257.2 78.0 15 16 3.5e-08 2.8e-05 24.3 0.6 1 24 497 520 497 522 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF133-215 - 559 6.3e-79 257.2 78.0 16 16 3.6 2.9e+03 -1.0 2.1 2 12 522 532 521 543 0.67 Zinc-finger double domain zf-C2H2_4 PF13894.6 24 ZNF133-215 - 559 1.3e-51 168.7 95.5 1 15 0.00056 0.46 11.5 0.3 2 23 120 141 119 142 0.91 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF133-215 - 559 1.3e-51 168.7 95.5 2 15 7.4e-06 0.006 17.3 0.4 1 23 147 169 147 170 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF133-215 - 559 1.3e-51 168.7 95.5 3 15 2.8e-05 0.023 15.5 0.1 2 23 176 197 175 198 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF133-215 - 559 1.3e-51 168.7 95.5 4 15 6.1e-06 0.005 17.6 0.4 1 23 203 225 203 226 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF133-215 - 559 1.3e-51 168.7 95.5 5 15 4.4e-06 0.0036 18.0 0.5 1 23 231 253 231 254 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF133-215 - 559 1.3e-51 168.7 95.5 6 15 4.5e-05 0.037 14.9 0.1 2 23 260 281 259 282 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF133-215 - 559 1.3e-51 168.7 95.5 7 15 1.8e-05 0.014 16.1 2.6 1 23 287 309 287 310 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF133-215 - 559 1.3e-51 168.7 95.5 8 15 4.1e-05 0.033 15.0 1.1 1 23 315 337 315 338 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF133-215 - 559 1.3e-51 168.7 95.5 9 15 1.7e-05 0.014 16.2 0.7 1 23 343 365 343 366 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF133-215 - 559 1.3e-51 168.7 95.5 10 15 3.2e-06 0.0026 18.4 0.3 2 23 372 393 371 394 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF133-215 - 559 1.3e-51 168.7 95.5 11 15 2.3e-05 0.019 15.8 0.2 3 23 401 421 400 422 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF133-215 - 559 1.3e-51 168.7 95.5 12 15 1.5e-05 0.012 16.4 1.0 1 23 427 449 427 450 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF133-215 - 559 1.3e-51 168.7 95.5 13 15 2.3e-05 0.018 15.8 0.2 1 23 455 477 455 478 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF133-215 - 559 1.3e-51 168.7 95.5 14 15 0.0077 6.3 7.9 3.0 2 23 484 505 483 506 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF133-215 - 559 1.3e-51 168.7 95.5 15 15 5.9e-05 0.048 14.5 1.4 1 22 511 532 511 534 0.93 C2H2-type zinc finger zf-C2H2_jaz PF12171.8 27 ZNF133-215 - 559 5.4e-15 55.2 33.3 1 14 0.19 1.5e+02 2.8 0.0 3 22 120 139 119 139 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF133-215 - 559 5.4e-15 55.2 33.3 2 14 0.041 33 4.9 0.0 2 22 147 167 146 167 0.86 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF133-215 - 559 5.4e-15 55.2 33.3 3 14 0.0057 4.6 7.6 0.0 4 24 177 197 174 198 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF133-215 - 559 5.4e-15 55.2 33.3 4 14 0.018 14 6.1 0.1 2 24 203 225 202 226 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF133-215 - 559 5.4e-15 55.2 33.3 5 14 0.014 11 6.4 0.0 2 24 231 253 230 254 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF133-215 - 559 5.4e-15 55.2 33.3 6 14 0.08 65 4.0 0.1 4 24 261 281 259 282 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF133-215 - 559 5.4e-15 55.2 33.3 7 14 0.026 21 5.5 0.3 2 24 287 309 286 310 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF133-215 - 559 5.4e-15 55.2 33.3 8 14 2 1.6e+03 -0.5 0.1 2 24 315 337 314 337 0.87 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF133-215 - 559 5.4e-15 55.2 33.3 9 14 0.57 4.7e+02 1.3 0.0 2 21 343 362 342 363 0.79 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF133-215 - 559 5.4e-15 55.2 33.3 10 14 0.0039 3.2 8.2 0.1 4 24 373 393 370 394 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF133-215 - 559 5.4e-15 55.2 33.3 11 14 0.013 11 6.5 0.1 4 24 401 421 400 422 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF133-215 - 559 5.4e-15 55.2 33.3 12 14 0.047 38 4.7 0.0 2 22 427 447 426 450 0.88 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF133-215 - 559 5.4e-15 55.2 33.3 13 14 0.1 85 3.6 0.0 2 22 455 475 454 475 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF133-215 - 559 5.4e-15 55.2 33.3 14 14 0.034 28 5.1 0.2 2 23 511 532 510 536 0.85 Zinc-finger double-stranded RNA-binding Zn-ribbon_8 PF09723.10 40 ZNF133-215 - 559 5.2e-10 39.3 61.6 1 13 0.056 46 4.2 0.6 8 34 121 154 118 160 0.80 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF133-215 - 559 5.2e-10 39.3 61.6 2 13 0.00087 0.71 10.0 0.7 6 35 147 183 145 188 0.83 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF133-215 - 559 5.2e-10 39.3 61.6 3 13 0.058 47 4.2 0.2 6 16 203 213 202 229 0.82 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF133-215 - 559 5.2e-10 39.3 61.6 4 13 2.9e-05 0.024 14.8 0.9 6 33 231 265 229 271 0.90 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF133-215 - 559 5.2e-10 39.3 61.6 5 13 0.027 22 5.3 6.2 6 34 287 322 285 327 0.83 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF133-215 - 559 5.2e-10 39.3 61.6 6 13 0.0024 2 8.6 0.7 6 33 315 349 313 350 0.79 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF133-215 - 559 5.2e-10 39.3 61.6 7 13 0.00014 0.11 12.6 0.2 6 34 343 378 342 384 0.86 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF133-215 - 559 5.2e-10 39.3 61.6 8 13 0.0016 1.3 9.2 2.0 7 34 372 406 371 412 0.84 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF133-215 - 559 5.2e-10 39.3 61.6 9 13 0.012 10 6.3 3.2 7 34 400 434 397 439 0.84 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF133-215 - 559 5.2e-10 39.3 61.6 10 13 0.00025 0.21 11.8 1.2 6 33 427 461 426 464 0.84 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF133-215 - 559 5.2e-10 39.3 61.6 11 13 0.014 11 6.2 4.1 6 35 455 492 454 496 0.75 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF133-215 - 559 5.2e-10 39.3 61.6 12 13 0.023 19 5.5 4.9 8 34 485 518 480 524 0.89 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF133-215 - 559 5.2e-10 39.3 61.6 13 13 0.02 17 5.7 0.1 6 18 511 523 510 534 0.76 Zinc ribbon domain zinc_ribbon_15 PF17032.5 86 ZNF133-215 - 559 3.7e-09 37.2 46.1 1 10 0.0025 2.1 9.2 1.9 32 77 141 186 110 190 0.87 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF133-215 - 559 3.7e-09 37.2 46.1 2 10 0.0009 0.73 10.6 0.7 35 78 200 243 188 248 0.84 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF133-215 - 559 3.7e-09 37.2 46.1 3 10 0.00041 0.34 11.7 1.3 34 76 255 297 245 305 0.86 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF133-215 - 559 3.7e-09 37.2 46.1 4 10 0.0084 6.9 7.5 0.2 32 74 309 351 301 359 0.84 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF133-215 - 559 3.7e-09 37.2 46.1 5 10 0.0058 4.7 8.0 0.1 33 79 338 384 330 387 0.81 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF133-215 - 559 3.7e-09 37.2 46.1 6 10 0.00035 0.29 11.9 0.4 33 79 366 412 360 417 0.87 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF133-215 - 559 3.7e-09 37.2 46.1 7 10 0.00072 0.58 10.9 0.2 31 77 392 438 386 442 0.85 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF133-215 - 559 3.7e-09 37.2 46.1 8 10 0.0024 1.9 9.3 0.3 35 73 424 462 414 473 0.85 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF133-215 - 559 3.7e-09 37.2 46.1 9 10 0.0036 2.9 8.7 2.2 33 74 451 491 442 498 0.83 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF133-215 - 559 3.7e-09 37.2 46.1 10 10 0.055 44 4.9 2.2 33 74 478 519 467 526 0.82 zinc-ribbon family zf-C2H2_11 PF16622.5 29 ZNF133-215 - 559 1.5e-08 34.3 81.9 1 15 0.004 3.3 7.6 0.4 4 26 118 140 116 141 0.82 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF133-215 - 559 1.5e-08 34.3 81.9 2 15 0.097 79 3.1 0.2 10 23 149 165 147 167 0.82 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF133-215 - 559 1.5e-08 34.3 81.9 3 15 0.086 70 3.3 0.1 7 14 177 184 175 193 0.88 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF133-215 - 559 1.5e-08 34.3 81.9 4 15 0.053 43 4.0 0.1 7 16 205 214 202 223 0.82 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF133-215 - 559 1.5e-08 34.3 81.9 5 15 0.021 17 5.2 0.1 7 23 233 249 230 252 0.88 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF133-215 - 559 1.5e-08 34.3 81.9 6 15 0.033 27 4.6 0.1 3 15 257 269 255 279 0.80 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF133-215 - 559 1.5e-08 34.3 81.9 7 15 0.0036 2.9 7.7 0.8 7 15 289 297 286 307 0.79 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF133-215 - 559 1.5e-08 34.3 81.9 8 15 1.3 1.1e+03 -0.5 0.7 7 24 317 334 315 336 0.74 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF133-215 - 559 1.5e-08 34.3 81.9 9 15 0.0029 2.4 8.0 1.1 7 26 345 364 343 365 0.91 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF133-215 - 559 1.5e-08 34.3 81.9 10 15 0.0011 0.88 9.4 0.2 7 24 373 390 371 392 0.93 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF133-215 - 559 1.5e-08 34.3 81.9 11 15 0.12 96 2.9 0.1 7 17 401 411 399 419 0.79 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF133-215 - 559 1.5e-08 34.3 81.9 12 15 0.00018 0.14 11.9 0.8 7 23 429 445 427 447 0.93 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF133-215 - 559 1.5e-08 34.3 81.9 13 15 0.023 19 5.1 0.2 7 20 457 470 454 475 0.77 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF133-215 - 559 1.5e-08 34.3 81.9 14 15 0.23 1.8e+02 2.0 0.7 5 14 483 492 479 503 0.83 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF133-215 - 559 1.5e-08 34.3 81.9 15 15 0.00085 0.69 9.7 2.1 7 24 513 530 511 533 0.94 zinc-finger C2H2-type ADK_lid PF05191.14 36 ZNF133-215 - 559 7.5e-08 32.2 51.4 1 11 0.34 2.8e+02 1.6 0.2 4 27 121 152 119 158 0.54 Adenylate kinase, active site lid ADK_lid PF05191.14 36 ZNF133-215 - 559 7.5e-08 32.2 51.4 2 11 0.0006 0.49 10.4 0.9 3 29 176 210 175 214 0.77 Adenylate kinase, active site lid ADK_lid PF05191.14 36 ZNF133-215 - 559 7.5e-08 32.2 51.4 3 11 0.0012 0.96 9.5 0.8 3 33 204 242 203 244 0.70 Adenylate kinase, active site lid ADK_lid PF05191.14 36 ZNF133-215 - 559 7.5e-08 32.2 51.4 4 11 0.031 25 4.9 1.1 3 28 232 265 231 272 0.68 Adenylate kinase, active site lid ADK_lid PF05191.14 36 ZNF133-215 - 559 7.5e-08 32.2 51.4 5 11 0.032 26 4.9 1.3 3 34 260 299 259 300 0.67 Adenylate kinase, active site lid ADK_lid PF05191.14 36 ZNF133-215 - 559 7.5e-08 32.2 51.4 6 11 0.0073 5.9 7.0 2.3 4 33 289 326 287 328 0.77 Adenylate kinase, active site lid ADK_lid PF05191.14 36 ZNF133-215 - 559 7.5e-08 32.2 51.4 7 11 0.073 60 3.7 2.6 3 28 316 349 315 352 0.74 Adenylate kinase, active site lid ADK_lid PF05191.14 36 ZNF133-215 - 559 7.5e-08 32.2 51.4 8 11 0.085 69 3.5 0.2 3 14 344 355 334 365 0.85 Adenylate kinase, active site lid ADK_lid PF05191.14 36 ZNF133-215 - 559 7.5e-08 32.2 51.4 9 11 1.9e-05 0.015 15.2 0.5 3 33 372 410 371 412 0.69 Adenylate kinase, active site lid ADK_lid PF05191.14 36 ZNF133-215 - 559 7.5e-08 32.2 51.4 10 11 0.02 17 5.5 3.2 3 28 428 461 427 496 0.63 Adenylate kinase, active site lid ADK_lid PF05191.14 36 ZNF133-215 - 559 7.5e-08 32.2 51.4 11 11 0.0095 7.8 6.6 0.3 3 14 512 523 511 543 0.80 Adenylate kinase, active site lid # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF133-215.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF133-215.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF133-215.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF133-215.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF133-215.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:59:56 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZNF134-201 - 427 8e-74 241.0 79.7 1 12 2.8e-05 0.018 15.5 1.0 1 24 64 87 64 88 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF134-201 - 427 8e-74 241.0 79.7 2 12 0.024 16 6.2 1.1 8 18 124 135 122 136 0.85 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF134-201 - 427 8e-74 241.0 79.7 3 12 0.0002 0.13 12.7 0.8 10 25 170 186 154 187 0.76 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF134-201 - 427 8e-74 241.0 79.7 4 12 1.4e-11 9.1e-09 35.4 0.2 2 25 191 214 190 215 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF134-201 - 427 8e-74 241.0 79.7 5 12 4.9e-12 3.1e-09 36.8 0.3 2 25 219 242 218 243 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF134-201 - 427 8e-74 241.0 79.7 6 12 1.4e-10 8.7e-08 32.3 2.3 1 26 246 271 246 271 0.97 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF134-201 - 427 8e-74 241.0 79.7 7 12 1.4e-08 8.7e-06 25.9 0.4 1 26 274 299 274 299 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF134-201 - 427 8e-74 241.0 79.7 8 12 1.3e-09 8.6e-07 29.1 0.1 2 26 303 327 302 327 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF134-201 - 427 8e-74 241.0 79.7 9 12 7.2e-09 4.6e-06 26.8 0.8 2 25 331 354 330 355 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF134-201 - 427 8e-74 241.0 79.7 10 12 8.4e-10 5.4e-07 29.8 0.2 4 24 361 381 358 383 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF134-201 - 427 8e-74 241.0 79.7 11 12 2e-12 1.3e-09 38.0 0.8 1 24 386 409 386 410 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF134-201 - 427 8e-74 241.0 79.7 12 12 0.033 21 5.8 1.1 1 10 414 423 414 426 0.91 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZNF134-201 - 427 5.3e-58 190.4 78.3 1 11 0.021 13 6.4 0.2 2 23 51 72 50 73 0.92 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF134-201 - 427 5.3e-58 190.4 78.3 2 11 0.36 2.3e+02 2.5 0.1 1 10 78 87 78 95 0.83 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF134-201 - 427 5.3e-58 190.4 78.3 3 11 1.9e-09 1.2e-06 28.6 0.6 1 23 176 198 176 198 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF134-201 - 427 5.3e-58 190.4 78.3 4 11 6.5e-09 4.2e-06 26.9 0.2 1 23 204 226 204 226 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF134-201 - 427 5.3e-58 190.4 78.3 5 11 1.6e-09 1e-06 28.8 1.2 1 23 232 254 232 254 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF134-201 - 427 5.3e-58 190.4 78.3 6 11 2.6e-08 1.7e-05 25.0 4.1 1 23 260 282 260 282 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF134-201 - 427 5.3e-58 190.4 78.3 7 11 2.3e-08 1.5e-05 25.2 1.9 1 23 288 310 288 310 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF134-201 - 427 5.3e-58 190.4 78.3 8 11 1.4e-08 9.2e-06 25.8 2.0 1 23 316 338 316 338 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF134-201 - 427 5.3e-58 190.4 78.3 9 11 8.8e-07 0.00056 20.2 0.3 1 23 344 366 344 366 0.95 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF134-201 - 427 5.3e-58 190.4 78.3 10 11 1.1e-08 6.8e-06 26.3 2.2 1 23 372 394 372 394 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF134-201 - 427 5.3e-58 190.4 78.3 11 11 1.1e-07 6.9e-05 23.1 1.4 1 23 400 422 400 422 0.98 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZNF134-201 - 427 8.5e-32 107.1 75.8 1 11 0.0016 1 10.4 0.1 2 24 51 73 50 73 0.97 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF134-201 - 427 8.5e-32 107.1 75.8 2 11 0.45 2.9e+02 2.8 0.3 1 16 78 93 78 98 0.79 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF134-201 - 427 8.5e-32 107.1 75.8 3 11 1.1e-06 0.00073 20.2 0.6 1 23 176 198 176 199 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF134-201 - 427 8.5e-32 107.1 75.8 4 11 5.5e-06 0.0035 18.0 0.3 1 23 204 226 204 227 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF134-201 - 427 8.5e-32 107.1 75.8 5 11 9.4e-07 0.0006 20.4 0.7 1 23 232 254 232 255 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF134-201 - 427 8.5e-32 107.1 75.8 6 11 0.0003 0.19 12.6 2.9 1 23 260 282 260 283 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF134-201 - 427 8.5e-32 107.1 75.8 7 11 5.8e-05 0.037 14.9 1.6 1 23 288 310 288 311 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF134-201 - 427 8.5e-32 107.1 75.8 8 11 0.00017 0.11 13.4 1.0 3 23 318 338 316 339 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF134-201 - 427 8.5e-32 107.1 75.8 9 11 0.00023 0.15 13.0 0.4 1 23 344 366 344 367 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF134-201 - 427 8.5e-32 107.1 75.8 10 11 8.8e-05 0.056 14.3 1.8 1 23 372 394 372 395 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF134-201 - 427 8.5e-32 107.1 75.8 11 11 2.8e-05 0.018 15.8 1.5 1 23 400 422 400 423 0.94 C2H2-type zinc finger zf-C2H2_jaz PF12171.8 27 ZNF134-201 - 427 2.6e-14 53.0 44.6 1 10 1.6 1e+03 0.2 0.0 2 11 78 87 78 87 0.89 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF134-201 - 427 2.6e-14 53.0 44.6 2 10 0.0017 1.1 9.7 0.6 2 22 176 196 175 196 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF134-201 - 427 2.6e-14 53.0 44.6 3 10 0.00046 0.29 11.5 0.0 2 22 204 224 203 224 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF134-201 - 427 2.6e-14 53.0 44.6 4 10 0.00027 0.17 12.2 0.1 2 22 232 252 231 252 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF134-201 - 427 2.6e-14 53.0 44.6 5 10 0.00068 0.44 10.9 1.3 2 22 260 280 259 280 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF134-201 - 427 2.6e-14 53.0 44.6 6 10 0.0015 0.95 9.8 0.2 2 22 288 308 287 308 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF134-201 - 427 2.6e-14 53.0 44.6 7 10 0.035 23 5.4 0.2 2 22 316 336 315 336 0.91 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF134-201 - 427 2.6e-14 53.0 44.6 8 10 2.8e-05 0.018 15.3 0.1 2 22 344 364 343 364 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF134-201 - 427 2.6e-14 53.0 44.6 9 10 0.39 2.5e+02 2.1 0.1 2 22 372 392 371 392 0.87 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF134-201 - 427 2.6e-14 53.0 44.6 10 10 0.32 2.1e+02 2.4 0.2 2 22 400 420 399 420 0.83 Zinc-finger double-stranded RNA-binding zf_UBZ PF18439.1 32 ZNF134-201 - 427 5.2e-11 41.9 42.0 1 11 0.44 2.8e+02 1.2 0.1 4 21 51 69 48 69 0.82 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF134-201 - 427 5.2e-11 41.9 42.0 2 11 0.6 3.8e+02 0.8 0.0 3 13 78 88 76 92 0.84 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF134-201 - 427 5.2e-11 41.9 42.0 3 11 0.0015 0.98 9.1 0.2 2 16 175 190 174 195 0.78 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF134-201 - 427 5.2e-11 41.9 42.0 4 11 0.004 2.5 7.7 0.1 3 17 204 219 202 223 0.76 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF134-201 - 427 5.2e-11 41.9 42.0 5 11 0.0012 0.74 9.5 0.2 3 20 232 250 230 251 0.83 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF134-201 - 427 5.2e-11 41.9 42.0 6 11 0.0042 2.7 7.7 0.2 3 15 260 272 259 279 0.84 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF134-201 - 427 5.2e-11 41.9 42.0 7 11 0.0064 4.1 7.1 0.2 3 15 288 300 286 307 0.76 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF134-201 - 427 5.2e-11 41.9 42.0 8 11 0.0097 6.2 6.5 0.1 3 12 316 325 314 335 0.85 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF134-201 - 427 5.2e-11 41.9 42.0 9 11 0.061 39 3.9 0.1 3 20 344 362 342 363 0.82 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF134-201 - 427 5.2e-11 41.9 42.0 10 11 0.012 7.9 6.2 0.1 3 12 372 381 370 390 0.84 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF134-201 - 427 5.2e-11 41.9 42.0 11 11 0.0092 5.9 6.6 0.2 3 15 400 412 398 419 0.78 Ubiquitin-Binding Zinc Finger Zn-ribbon_8 PF09723.10 40 ZNF134-201 - 427 8.4e-09 35.4 53.0 1 10 0.41 2.6e+02 1.8 0.1 8 15 80 87 73 108 0.86 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF134-201 - 427 8.4e-09 35.4 53.0 2 10 5.9e-06 0.0038 17.3 3.8 6 38 176 215 175 217 0.90 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF134-201 - 427 8.4e-09 35.4 53.0 3 10 6.3e-05 0.04 14.0 5.7 6 38 204 243 202 245 0.92 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF134-201 - 427 8.4e-09 35.4 53.0 4 10 0.0045 2.9 8.1 0.6 6 17 232 243 231 255 0.85 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF134-201 - 427 8.4e-09 35.4 53.0 5 10 7.3e-05 0.047 13.8 4.3 6 34 260 295 258 300 0.92 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF134-201 - 427 8.4e-09 35.4 53.0 6 10 0.00022 0.14 12.3 3.4 6 34 288 323 287 323 0.85 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF134-201 - 427 8.4e-09 35.4 53.0 7 10 0.00069 0.44 10.7 2.3 6 34 316 351 315 357 0.87 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF134-201 - 427 8.4e-09 35.4 53.0 8 10 0.0065 4.1 7.6 2.3 6 36 344 381 343 385 0.87 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF134-201 - 427 8.4e-09 35.4 53.0 9 10 0.00099 0.64 10.2 2.7 6 34 372 407 370 411 0.90 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF134-201 - 427 8.4e-09 35.4 53.0 10 10 0.059 38 4.5 0.6 6 16 400 410 399 418 0.84 Zinc ribbon domain zf-C2H2_6 PF13912.6 27 ZNF134-201 - 427 2.6e-07 30.4 81.7 1 11 2.8 1.8e+03 -0.9 0.3 4 8 52 56 51 56 0.87 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF134-201 - 427 2.6e-07 30.4 81.7 2 11 2.5 1.6e+03 -0.7 0.1 2 11 78 87 77 87 0.89 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF134-201 - 427 2.6e-07 30.4 81.7 3 11 9.4e-05 0.06 13.4 1.3 1 21 175 195 175 201 0.79 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF134-201 - 427 2.6e-07 30.4 81.7 4 11 0.0004 0.26 11.3 0.5 2 12 204 214 204 217 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF134-201 - 427 2.6e-07 30.4 81.7 5 11 3.4e-08 2.2e-05 24.3 0.9 2 24 232 254 232 257 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF134-201 - 427 2.6e-07 30.4 81.7 6 11 0.014 8.8 6.5 2.6 2 20 260 278 260 283 0.78 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF134-201 - 427 2.6e-07 30.4 81.7 7 11 0.011 7.3 6.7 1.1 2 12 288 298 288 299 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF134-201 - 427 2.6e-07 30.4 81.7 8 11 0.01 6.5 6.9 1.3 2 22 316 336 316 340 0.85 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF134-201 - 427 2.6e-07 30.4 81.7 9 11 0.28 1.8e+02 2.3 1.3 2 12 344 354 344 357 0.90 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF134-201 - 427 2.6e-07 30.4 81.7 10 11 0.1 67 3.7 0.7 2 11 372 381 372 382 0.92 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF134-201 - 427 2.6e-07 30.4 81.7 11 11 0.003 1.9 8.6 0.9 2 12 400 410 400 422 0.85 C2H2-type zinc finger # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF134-201.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF134-201.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF134-201.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF134-201.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF134-201.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:59:57 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF134-202.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF134-202.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF134-202.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF134-202.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF134-202.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:59:57 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF134-203.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF134-203.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF134-203.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF134-203.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF134-203.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:59:58 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF134-204.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF134-204.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF134-204.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF134-204.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF134-204.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:59:58 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZNF135-201 - 658 6.5e-134 431.0 126.6 1 17 0.00016 0.14 12.6 4.4 11 26 210 225 206 225 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF135-201 - 658 6.5e-134 431.0 126.6 2 17 9.4e-09 8.5e-06 26.0 2.1 2 26 229 253 228 253 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF135-201 - 658 6.5e-134 431.0 126.6 3 17 1.6e-11 1.4e-08 34.7 0.7 1 25 256 280 256 281 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF135-201 - 658 6.5e-134 431.0 126.6 4 17 1.4e-11 1.2e-08 35.0 0.5 3 25 286 308 285 308 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF135-201 - 658 6.5e-134 431.0 126.6 5 17 7.3e-12 6.5e-09 35.8 0.9 2 25 313 336 312 337 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF135-201 - 658 6.5e-134 431.0 126.6 6 17 6.7e-12 6e-09 35.9 1.4 1 26 340 365 340 365 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF135-201 - 658 6.5e-134 431.0 126.6 7 17 2.7e-12 2.4e-09 37.2 1.5 1 25 368 392 368 393 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF135-201 - 658 6.5e-134 431.0 126.6 8 17 4.8e-11 4.3e-08 33.2 0.2 3 25 398 420 397 421 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF135-201 - 658 6.5e-134 431.0 126.6 9 17 3.4e-09 3e-06 27.4 1.6 2 26 425 449 425 449 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF135-201 - 658 6.5e-134 431.0 126.6 10 17 2.1e-12 1.9e-09 37.5 0.4 1 25 452 476 452 477 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF135-201 - 658 6.5e-134 431.0 126.6 11 17 1e-11 9.1e-09 35.4 1.8 1 26 480 505 480 505 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF135-201 - 658 6.5e-134 431.0 126.6 12 17 2e-11 1.7e-08 34.5 0.3 1 25 508 532 508 533 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF135-201 - 658 6.5e-134 431.0 126.6 13 17 2.6e-10 2.3e-07 30.9 0.1 3 25 538 560 537 561 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF135-201 - 658 6.5e-134 431.0 126.6 14 17 3.1e-08 2.8e-05 24.3 1.4 4 26 567 589 565 589 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF135-201 - 658 6.5e-134 431.0 126.6 15 17 2.6e-11 2.3e-08 34.1 1.5 1 25 592 616 592 617 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF135-201 - 658 6.5e-134 431.0 126.6 16 17 9.6e-11 8.6e-08 32.3 2.4 1 26 620 645 620 645 0.97 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF135-201 - 658 6.5e-134 431.0 126.6 17 17 0.035 31 5.2 0.5 1 11 648 658 648 658 0.92 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZNF135-201 - 658 1.1e-95 309.0 128.3 1 16 3.2e-08 2.9e-05 24.3 2.8 1 23 214 236 214 236 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF135-201 - 658 1.1e-95 309.0 128.3 2 16 7e-08 6.3e-05 23.2 1.7 1 23 242 264 242 264 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF135-201 - 658 1.1e-95 309.0 128.3 3 16 5.2e-07 0.00047 20.5 0.5 1 23 270 292 270 292 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF135-201 - 658 1.1e-95 309.0 128.3 4 16 2.8e-07 0.00025 21.3 2.2 1 23 298 320 298 320 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF135-201 - 658 1.1e-95 309.0 128.3 5 16 2.4e-08 2.2e-05 24.7 1.0 1 23 326 348 326 348 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF135-201 - 658 1.1e-95 309.0 128.3 6 16 8.7e-10 7.8e-07 29.2 1.5 1 23 354 376 354 376 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF135-201 - 658 1.1e-95 309.0 128.3 7 16 1.6e-07 0.00014 22.1 0.7 1 23 382 404 382 404 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF135-201 - 658 1.1e-95 309.0 128.3 8 16 3.2e-08 2.9e-05 24.3 0.2 1 23 410 432 410 432 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF135-201 - 658 1.1e-95 309.0 128.3 9 16 2.2e-07 0.00019 21.7 2.2 3 23 440 460 438 460 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF135-201 - 658 1.1e-95 309.0 128.3 10 16 2.3e-08 2.1e-05 24.7 2.2 1 23 466 488 466 488 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF135-201 - 658 1.1e-95 309.0 128.3 11 16 5.2e-10 4.7e-07 29.9 1.8 1 23 494 516 494 516 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF135-201 - 658 1.1e-95 309.0 128.3 12 16 8.7e-07 0.00078 19.8 0.1 1 23 522 544 522 544 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF135-201 - 658 1.1e-95 309.0 128.3 13 16 1.3e-08 1.2e-05 25.5 0.2 1 23 550 572 550 572 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF135-201 - 658 1.1e-95 309.0 128.3 14 16 1.3e-07 0.00012 22.3 2.2 3 23 580 600 578 600 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF135-201 - 658 1.1e-95 309.0 128.3 15 16 6.4e-09 5.7e-06 26.5 5.3 1 23 606 628 606 628 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF135-201 - 658 1.1e-95 309.0 128.3 16 16 2.2e-09 2e-06 27.9 2.8 1 23 634 656 634 656 0.98 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZNF135-201 - 658 4.5e-50 163.9 121.7 1 16 0.00011 0.096 13.6 2.5 1 23 214 236 214 237 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF135-201 - 658 4.5e-50 163.9 121.7 2 16 0.00018 0.16 12.9 1.4 1 23 242 264 242 265 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF135-201 - 658 4.5e-50 163.9 121.7 3 16 1.4e-06 0.0012 19.5 0.3 1 23 270 292 270 293 0.97 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF135-201 - 658 4.5e-50 163.9 121.7 4 16 5.8e-06 0.0052 17.5 2.1 1 23 298 320 298 321 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF135-201 - 658 4.5e-50 163.9 121.7 5 16 7.3e-05 0.066 14.1 0.9 1 23 326 348 326 349 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF135-201 - 658 4.5e-50 163.9 121.7 6 16 6.3e-05 0.057 14.3 1.4 1 23 354 376 354 377 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF135-201 - 658 4.5e-50 163.9 121.7 7 16 1.6e-05 0.015 16.1 0.5 1 23 382 404 382 405 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF135-201 - 658 4.5e-50 163.9 121.7 8 16 0.00013 0.12 13.3 0.2 1 23 410 432 410 433 0.81 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF135-201 - 658 4.5e-50 163.9 121.7 9 16 1.7e-05 0.015 16.1 1.8 2 23 439 460 438 461 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF135-201 - 658 4.5e-50 163.9 121.7 10 16 2.1e-05 0.018 15.8 1.7 1 23 466 488 466 489 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF135-201 - 658 4.5e-50 163.9 121.7 11 16 8.2e-05 0.073 13.9 1.4 1 23 494 516 494 517 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF135-201 - 658 4.5e-50 163.9 121.7 12 16 3e-05 0.027 15.3 0.1 1 23 522 544 522 545 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF135-201 - 658 4.5e-50 163.9 121.7 13 16 4.5e-05 0.04 14.8 0.2 1 23 550 572 550 573 0.88 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF135-201 - 658 4.5e-50 163.9 121.7 14 16 1.9e-05 0.017 15.9 1.9 2 23 579 600 578 601 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF135-201 - 658 4.5e-50 163.9 121.7 15 16 6.8e-05 0.061 14.2 3.5 1 23 606 628 606 629 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF135-201 - 658 4.5e-50 163.9 121.7 16 16 5.5e-05 0.049 14.5 1.9 1 23 634 656 634 657 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF135-201 - 658 6.9e-24 83.3 127.6 1 16 1.7e-05 0.016 15.2 3.9 2 24 214 236 214 239 0.95 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF135-201 - 658 6.9e-24 83.3 127.6 2 16 0.00023 0.21 11.6 1.6 2 24 242 264 242 267 0.91 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF135-201 - 658 6.9e-24 83.3 127.6 3 16 4.5e-05 0.041 13.9 0.2 2 24 270 292 270 295 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF135-201 - 658 6.9e-24 83.3 127.6 4 16 0.00025 0.23 11.5 1.4 2 12 298 308 298 308 0.95 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF135-201 - 658 6.9e-24 83.3 127.6 5 16 0.00046 0.42 10.7 0.4 2 12 326 336 326 348 0.85 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF135-201 - 658 6.9e-24 83.3 127.6 6 16 0.017 15 5.7 2.4 2 24 354 376 354 379 0.89 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF135-201 - 658 6.9e-24 83.3 127.6 7 16 8.4e-06 0.0075 16.2 0.5 2 24 382 404 382 407 0.95 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF135-201 - 658 6.9e-24 83.3 127.6 8 16 0.00084 0.76 9.9 0.4 2 24 410 432 410 435 0.92 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF135-201 - 658 6.9e-24 83.3 127.6 9 16 0.0016 1.4 9.0 3.1 2 24 438 460 438 463 0.90 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF135-201 - 658 6.9e-24 83.3 127.6 10 16 0.00085 0.77 9.8 1.6 2 20 466 484 466 489 0.79 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF135-201 - 658 6.9e-24 83.3 127.6 11 16 0.0056 5 7.2 1.7 2 24 494 516 494 519 0.90 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF135-201 - 658 6.9e-24 83.3 127.6 12 16 0.0015 1.4 9.0 0.1 2 21 522 541 522 546 0.82 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF135-201 - 658 6.9e-24 83.3 127.6 13 16 0.0043 3.8 7.6 0.3 2 12 550 560 550 575 0.78 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF135-201 - 658 6.9e-24 83.3 127.6 14 16 0.0013 1.2 9.2 3.4 2 24 578 600 578 603 0.90 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF135-201 - 658 6.9e-24 83.3 127.6 15 16 0.002 1.8 8.6 3.0 2 24 606 628 606 631 0.91 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF135-201 - 658 6.9e-24 83.3 127.6 16 16 0.065 58 3.8 2.8 2 24 634 656 634 658 0.93 C2H2-type zinc finger KRAB PF01352.27 42 ZNF135-201 - 658 9.3e-23 79.6 0.8 1 2 4e-25 3.6e-22 77.7 0.3 2 42 14 54 13 54 0.98 KRAB box KRAB PF01352.27 42 ZNF135-201 - 658 9.3e-23 79.6 0.8 2 2 1.9 1.7e+03 -1.2 0.0 9 25 147 163 145 165 0.87 KRAB box Zn-ribbon_8 PF09723.10 40 ZNF135-201 - 658 7.4e-20 70.8 87.0 1 15 0.0083 7.4 6.8 5.4 6 32 214 247 213 253 0.82 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF135-201 - 658 7.4e-20 70.8 87.0 2 15 0.0027 2.5 8.3 4.3 6 35 242 278 241 282 0.86 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF135-201 - 658 7.4e-20 70.8 87.0 3 15 0.00055 0.49 10.5 0.1 6 21 270 285 269 292 0.83 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF135-201 - 658 7.4e-20 70.8 87.0 4 15 0.0002 0.18 11.9 6.5 6 38 298 337 297 339 0.82 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF135-201 - 658 7.4e-20 70.8 87.0 5 15 0.011 9.8 6.4 0.5 6 16 326 336 325 349 0.83 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF135-201 - 658 7.4e-20 70.8 87.0 6 15 3.3e-05 0.029 14.5 4.0 6 37 354 392 353 395 0.91 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF135-201 - 658 7.4e-20 70.8 87.0 7 15 0.00027 0.24 11.6 5.3 6 35 382 418 381 422 0.86 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF135-201 - 658 7.4e-20 70.8 87.0 8 15 0.00022 0.2 11.8 3.9 6 34 410 445 409 448 0.92 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF135-201 - 658 7.4e-20 70.8 87.0 9 15 0.00051 0.46 10.6 4.7 6 37 438 476 436 478 0.77 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF135-201 - 658 7.4e-20 70.8 87.0 10 15 0.00023 0.21 11.8 4.9 6 34 466 501 465 505 0.92 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF135-201 - 658 7.4e-20 70.8 87.0 11 15 1e-05 0.0092 16.1 3.3 6 36 494 531 493 535 0.91 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF135-201 - 658 7.4e-20 70.8 87.0 12 15 0.0017 1.5 9.0 0.2 6 21 522 537 521 547 0.85 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF135-201 - 658 7.4e-20 70.8 87.0 13 15 6.7e-06 0.0061 16.7 2.0 6 34 550 585 549 589 0.93 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF135-201 - 658 7.4e-20 70.8 87.0 14 15 0.0002 0.18 12.0 4.4 6 35 606 642 605 645 0.88 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF135-201 - 658 7.4e-20 70.8 87.0 15 15 0.0057 5.2 7.3 0.2 6 20 634 648 633 655 0.80 Zinc ribbon domain zf-C2H2_11 PF16622.5 29 ZNF135-201 - 658 7.6e-16 57.6 92.8 1 16 0.0041 3.7 7.4 0.2 5 23 214 232 211 235 0.84 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF135-201 - 658 7.6e-16 57.6 92.8 2 16 2 1.8e+03 -1.2 0.9 7 26 244 263 242 264 0.84 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF135-201 - 658 7.6e-16 57.6 92.8 3 16 0.0074 6.6 6.6 0.1 5 15 270 280 267 290 0.79 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF135-201 - 658 7.6e-16 57.6 92.8 4 16 0.02 18 5.2 0.6 6 23 299 316 296 319 0.90 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF135-201 - 658 7.6e-16 57.6 92.8 5 16 0.0036 3.2 7.6 0.6 6 26 327 347 324 348 0.94 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF135-201 - 658 7.6e-16 57.6 92.8 6 16 8.4e-06 0.0075 16.0 0.6 5 26 354 375 351 376 0.94 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF135-201 - 658 7.6e-16 57.6 92.8 7 16 0.039 35 4.3 0.1 6 23 383 400 380 403 0.82 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF135-201 - 658 7.6e-16 57.6 92.8 8 16 0.0034 3.1 7.7 0.1 6 26 411 431 408 432 0.93 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF135-201 - 658 7.6e-16 57.6 92.8 9 16 0.00071 0.63 9.8 0.7 7 23 440 456 437 459 0.93 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF135-201 - 658 7.6e-16 57.6 92.8 10 16 0.14 1.2e+02 2.5 0.9 6 26 467 487 464 488 0.89 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF135-201 - 658 7.6e-16 57.6 92.8 11 16 0.00015 0.13 12.0 0.4 6 26 495 515 492 516 0.93 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF135-201 - 658 7.6e-16 57.6 92.8 12 16 0.011 10 6.0 0.1 6 26 523 543 520 544 0.82 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF135-201 - 658 7.6e-16 57.6 92.8 13 16 0.006 5.4 6.9 0.3 6 26 551 571 548 574 0.82 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF135-201 - 658 7.6e-16 57.6 92.8 14 16 0.0009 0.81 9.5 1.0 7 23 580 596 577 599 0.93 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF135-201 - 658 7.6e-16 57.6 92.8 15 16 0.047 42 4.0 1.3 6 26 607 627 604 628 0.93 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF135-201 - 658 7.6e-16 57.6 92.8 16 16 0.00013 0.12 12.2 0.5 7 24 636 653 633 655 0.92 zinc-finger C2H2-type XPA_N PF01286.18 32 ZNF135-201 - 658 4.5e-14 52.2 69.7 1 16 0.0014 1.3 9.1 0.1 3 14 215 226 213 232 0.88 XPA protein N-terminal XPA_N PF01286.18 32 ZNF135-201 - 658 4.5e-14 52.2 69.7 2 16 0.11 98 3.1 0.1 3 14 243 254 241 259 0.89 XPA protein N-terminal XPA_N PF01286.18 32 ZNF135-201 - 658 4.5e-14 52.2 69.7 3 16 0.23 2.1e+02 2.1 0.1 3 12 271 280 269 281 0.87 XPA protein N-terminal XPA_N PF01286.18 32 ZNF135-201 - 658 4.5e-14 52.2 69.7 4 16 0.047 42 4.3 0.4 3 11 299 307 297 309 0.89 XPA protein N-terminal XPA_N PF01286.18 32 ZNF135-201 - 658 4.5e-14 52.2 69.7 5 16 0.0026 2.4 8.3 0.1 3 15 327 339 325 343 0.86 XPA protein N-terminal XPA_N PF01286.18 32 ZNF135-201 - 658 4.5e-14 52.2 69.7 6 16 0.019 17 5.5 0.2 3 14 355 366 353 371 0.89 XPA protein N-terminal XPA_N PF01286.18 32 ZNF135-201 - 658 4.5e-14 52.2 69.7 7 16 0.018 16 5.6 0.2 3 12 383 392 381 393 0.88 XPA protein N-terminal XPA_N PF01286.18 32 ZNF135-201 - 658 4.5e-14 52.2 69.7 8 16 0.00022 0.2 11.8 0.1 3 18 411 426 409 429 0.91 XPA protein N-terminal XPA_N PF01286.18 32 ZNF135-201 - 658 4.5e-14 52.2 69.7 9 16 0.012 10 6.2 0.3 4 14 440 450 438 456 0.89 XPA protein N-terminal XPA_N PF01286.18 32 ZNF135-201 - 658 4.5e-14 52.2 69.7 10 16 0.013 12 6.1 0.1 3 15 467 479 465 484 0.86 XPA protein N-terminal XPA_N PF01286.18 32 ZNF135-201 - 658 4.5e-14 52.2 69.7 11 16 0.016 15 5.8 0.2 3 14 495 506 493 511 0.89 XPA protein N-terminal XPA_N PF01286.18 32 ZNF135-201 - 658 4.5e-14 52.2 69.7 12 16 0.28 2.5e+02 1.8 0.1 3 12 523 532 521 533 0.87 XPA protein N-terminal XPA_N PF01286.18 32 ZNF135-201 - 658 4.5e-14 52.2 69.7 13 16 0.0064 5.7 7.1 0.1 3 17 551 565 549 567 0.91 XPA protein N-terminal XPA_N PF01286.18 32 ZNF135-201 - 658 4.5e-14 52.2 69.7 14 16 0.02 18 5.5 0.4 4 14 580 590 578 596 0.89 XPA protein N-terminal XPA_N PF01286.18 32 ZNF135-201 - 658 4.5e-14 52.2 69.7 15 16 0.011 9.6 6.3 0.1 3 15 607 619 605 624 0.86 XPA protein N-terminal XPA_N PF01286.18 32 ZNF135-201 - 658 4.5e-14 52.2 69.7 16 16 0.018 17 5.6 0.1 4 14 636 646 633 651 0.89 XPA protein N-terminal zf-C2H2_jaz PF12171.8 27 ZNF135-201 - 658 4.9e-13 49.0 76.0 1 16 0.001 0.93 9.9 0.9 2 20 214 232 213 236 0.90 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF135-201 - 658 4.9e-13 49.0 76.0 2 16 0.00062 0.56 10.6 0.1 2 22 242 262 241 262 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF135-201 - 658 4.9e-13 49.0 76.0 3 16 0.071 64 4.0 0.1 2 23 270 291 269 292 0.81 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF135-201 - 658 4.9e-13 49.0 76.0 4 16 0.0024 2.2 8.7 1.0 2 24 298 320 297 320 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF135-201 - 658 4.9e-13 49.0 76.0 5 16 0.026 23 5.4 0.1 2 22 326 346 325 346 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF135-201 - 658 4.9e-13 49.0 76.0 6 16 0.0074 6.6 7.1 0.1 4 22 356 374 353 374 0.91 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF135-201 - 658 4.9e-13 49.0 76.0 7 16 0.31 2.8e+02 2.0 0.1 2 12 382 392 381 404 0.72 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF135-201 - 658 4.9e-13 49.0 76.0 8 16 0.095 85 3.6 0.0 2 21 410 429 409 430 0.89 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF135-201 - 658 4.9e-13 49.0 76.0 9 16 0.00034 0.31 11.4 1.3 4 24 440 460 438 460 0.95 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF135-201 - 658 4.9e-13 49.0 76.0 10 16 0.12 1e+02 3.3 0.2 2 22 466 486 465 486 0.91 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF135-201 - 658 4.9e-13 49.0 76.0 11 16 0.0045 4.1 7.8 0.2 2 22 494 514 493 514 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF135-201 - 658 4.9e-13 49.0 76.0 12 16 7.7 6.9e+03 -2.5 0.1 2 11 522 531 521 532 0.84 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF135-201 - 658 4.9e-13 49.0 76.0 13 16 0.4 3.6e+02 1.6 0.0 2 22 550 570 549 570 0.90 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF135-201 - 658 4.9e-13 49.0 76.0 14 16 0.001 0.9 9.9 1.5 4 24 580 600 578 600 0.95 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF135-201 - 658 4.9e-13 49.0 76.0 15 16 0.069 62 4.1 0.3 2 21 606 625 605 626 0.90 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF135-201 - 658 4.9e-13 49.0 76.0 16 16 0.014 12 6.3 0.3 2 24 634 656 633 656 0.91 Zinc-finger double-stranded RNA-binding zf_UBZ PF18439.1 32 ZNF135-201 - 658 1.4e-12 46.9 80.6 1 16 0.00019 0.17 11.5 0.8 3 20 214 232 212 233 0.93 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF135-201 - 658 1.4e-12 46.9 80.6 2 16 2.9 2.6e+03 -1.9 0.2 3 13 242 252 241 261 0.69 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF135-201 - 658 1.4e-12 46.9 80.6 3 16 0.058 52 3.6 0.1 3 13 270 280 268 289 0.84 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF135-201 - 658 1.4e-12 46.9 80.6 4 16 0.0013 1.2 8.8 0.3 3 20 298 316 296 317 0.83 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF135-201 - 658 1.4e-12 46.9 80.6 5 16 0.0047 4.2 7.0 0.3 3 20 326 344 324 345 0.83 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF135-201 - 658 1.4e-12 46.9 80.6 6 16 0.0022 1.9 8.1 0.2 3 21 354 373 352 373 0.87 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF135-201 - 658 1.4e-12 46.9 80.6 7 16 0.087 78 3.0 0.2 3 12 382 391 380 401 0.84 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF135-201 - 658 1.4e-12 46.9 80.6 8 16 0.00067 0.6 9.7 0.1 3 20 410 428 408 429 0.92 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF135-201 - 658 1.4e-12 46.9 80.6 9 16 0.0032 2.9 7.6 0.3 3 21 438 457 436 457 0.89 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF135-201 - 658 1.4e-12 46.9 80.6 10 16 0.0044 4 7.1 0.5 3 21 466 485 464 485 0.86 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF135-201 - 658 1.4e-12 46.9 80.6 11 16 0.0055 5 6.8 0.3 3 21 494 513 492 513 0.87 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF135-201 - 658 1.4e-12 46.9 80.6 12 16 0.13 1.2e+02 2.4 0.1 3 14 522 533 520 541 0.82 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF135-201 - 658 1.4e-12 46.9 80.6 13 16 0.0039 3.5 7.3 0.1 3 21 550 569 548 569 0.92 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF135-201 - 658 1.4e-12 46.9 80.6 14 16 0.0027 2.4 7.8 0.3 3 21 578 597 576 597 0.89 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF135-201 - 658 1.4e-12 46.9 80.6 15 16 0.022 20 4.9 0.7 3 20 606 624 604 625 0.82 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF135-201 - 658 1.4e-12 46.9 80.6 16 16 0.019 17 5.1 0.1 3 21 634 653 632 653 0.85 Ubiquitin-Binding Zinc Finger zinc_ribbon_15 PF17032.5 86 ZNF135-201 - 658 3.2e-12 47.0 63.4 1 12 0.0021 1.9 9.3 2.7 35 76 211 252 202 260 0.84 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF135-201 - 658 3.2e-12 47.0 63.4 2 12 0.00045 0.41 11.4 1.4 31 81 263 313 258 316 0.87 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF135-201 - 658 3.2e-12 47.0 63.4 3 12 0.00073 0.65 10.8 1.5 31 78 291 338 284 344 0.84 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF135-201 - 658 3.2e-12 47.0 63.4 4 12 0.0019 1.7 9.5 1.1 35 78 323 366 316 372 0.87 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF135-201 - 658 3.2e-12 47.0 63.4 5 12 0.0032 2.8 8.7 1.0 32 77 376 421 369 426 0.86 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF135-201 - 658 3.2e-12 47.0 63.4 6 12 0.0015 1.3 9.8 0.6 31 78 403 450 396 453 0.83 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF135-201 - 658 3.2e-12 47.0 63.4 7 12 0.00012 0.11 13.2 1.7 32 78 432 478 424 481 0.86 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF135-201 - 658 3.2e-12 47.0 63.4 8 12 0.00024 0.22 12.3 1.5 32 76 488 532 481 536 0.87 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF135-201 - 658 3.2e-12 47.0 63.4 9 12 0.0043 3.9 8.3 1.1 32 78 516 562 512 566 0.84 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF135-201 - 658 3.2e-12 47.0 63.4 10 12 0.00086 0.77 10.5 1.5 29 78 541 590 535 596 0.85 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF135-201 - 658 3.2e-12 47.0 63.4 11 12 2.7e-05 0.024 15.4 1.8 26 78 566 618 563 624 0.87 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF135-201 - 658 3.2e-12 47.0 63.4 12 12 0.0012 1.1 10.1 1.6 35 78 603 646 594 652 0.86 zinc-ribbon family zf-trcl PF13451.6 48 ZNF135-201 - 658 2.5e-07 30.5 58.4 1 13 0.029 26 4.8 2.0 2 19 211 228 210 254 0.73 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF135-201 - 658 2.5e-07 30.5 58.4 2 13 0.026 23 5.0 0.1 3 14 268 279 266 283 0.89 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF135-201 - 658 2.5e-07 30.5 58.4 3 13 0.023 20 5.2 3.7 3 42 296 334 294 338 0.68 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF135-201 - 658 2.5e-07 30.5 58.4 4 13 0.11 1e+02 2.9 0.0 3 15 352 364 350 370 0.84 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF135-201 - 658 2.5e-07 30.5 58.4 5 13 0.045 40 4.2 0.1 3 15 380 392 378 394 0.89 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF135-201 - 658 2.5e-07 30.5 58.4 6 13 0.42 3.8e+02 1.1 0.1 3 14 408 419 406 422 0.87 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF135-201 - 658 2.5e-07 30.5 58.4 7 13 0.099 88 3.1 2.4 3 43 436 475 435 479 0.60 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF135-201 - 658 2.5e-07 30.5 58.4 8 13 0.017 16 5.5 0.1 3 16 492 505 490 512 0.85 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF135-201 - 658 2.5e-07 30.5 58.4 9 13 0.13 1.2e+02 2.7 0.0 3 14 520 531 518 535 0.88 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF135-201 - 658 2.5e-07 30.5 58.4 10 13 0.14 1.2e+02 2.7 0.1 3 14 548 559 546 562 0.87 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF135-201 - 658 2.5e-07 30.5 58.4 11 13 0.072 64 3.6 0.0 2 16 575 589 574 594 0.83 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF135-201 - 658 2.5e-07 30.5 58.4 12 13 0.019 17 5.4 0.1 3 14 604 615 602 618 0.90 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF135-201 - 658 2.5e-07 30.5 58.4 13 13 0.0015 1.3 8.9 0.1 3 17 632 646 630 651 0.88 Probable zinc-ribbon domain # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF135-201.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF135-201.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF135-201.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF135-201.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF135-201.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:59:59 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZNF135-202 - 390 2.5e-48 160.4 51.2 1 7 0.00012 0.079 13.4 4.4 11 26 222 237 218 237 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF135-202 - 390 2.5e-48 160.4 51.2 2 7 7e-09 4.5e-06 26.8 2.1 2 26 241 265 240 265 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF135-202 - 390 2.5e-48 160.4 51.2 3 7 1.2e-11 7.6e-09 35.6 0.7 1 25 268 292 268 293 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF135-202 - 390 2.5e-48 160.4 51.2 4 7 1e-11 6.5e-09 35.8 0.5 3 25 298 320 297 320 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF135-202 - 390 2.5e-48 160.4 51.2 5 7 5.4e-12 3.5e-09 36.7 0.9 2 25 325 348 324 349 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF135-202 - 390 2.5e-48 160.4 51.2 6 7 3.8e-12 2.5e-09 37.2 1.6 1 26 352 377 352 377 0.97 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF135-202 - 390 2.5e-48 160.4 51.2 7 7 0.027 17 6.0 0.5 1 11 380 390 380 390 0.92 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZNF135-202 - 390 4.5e-36 121.3 46.0 1 6 2.4e-08 1.6e-05 25.1 2.8 1 23 226 248 226 248 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF135-202 - 390 4.5e-36 121.3 46.0 2 6 5.2e-08 3.3e-05 24.1 1.7 1 23 254 276 254 276 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF135-202 - 390 4.5e-36 121.3 46.0 3 6 3.9e-07 0.00025 21.3 0.5 1 23 282 304 282 304 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF135-202 - 390 4.5e-36 121.3 46.0 4 6 2.1e-07 0.00013 22.2 2.2 1 23 310 332 310 332 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF135-202 - 390 4.5e-36 121.3 46.0 5 6 1.8e-08 1.2e-05 25.5 1.0 1 23 338 360 338 360 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF135-202 - 390 4.5e-36 121.3 46.0 6 6 3.9e-10 2.5e-07 30.8 2.3 1 23 366 388 366 388 0.99 Zinc finger, C2H2 type KRAB PF01352.27 42 ZNF135-202 - 390 2.7e-23 81.3 0.6 1 2 2.8e-25 1.8e-22 78.7 0.3 2 42 26 66 25 66 0.98 KRAB box KRAB PF01352.27 42 ZNF135-202 - 390 2.7e-23 81.3 0.6 2 2 1.3 8.1e+02 -0.2 0.0 9 25 159 175 157 179 0.87 KRAB box zf-C2H2_4 PF13894.6 24 ZNF135-202 - 390 2.4e-20 71.4 43.4 1 6 8e-05 0.051 14.4 2.5 1 23 226 248 226 249 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF135-202 - 390 2.4e-20 71.4 43.4 2 6 0.00013 0.083 13.8 1.4 1 23 254 276 254 277 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF135-202 - 390 2.4e-20 71.4 43.4 3 6 1e-06 0.00065 20.3 0.3 1 23 282 304 282 305 0.97 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF135-202 - 390 2.4e-20 71.4 43.4 4 6 4.3e-06 0.0028 18.4 2.1 1 23 310 332 310 333 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF135-202 - 390 2.4e-20 71.4 43.4 5 6 5.4e-05 0.035 15.0 0.9 1 23 338 360 338 361 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF135-202 - 390 2.4e-20 71.4 43.4 6 6 2.4e-05 0.016 16.0 1.8 1 23 366 388 366 389 0.95 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF135-202 - 390 1.2e-13 50.7 44.8 1 6 1.3e-05 0.0084 16.1 3.9 2 24 226 248 226 251 0.95 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF135-202 - 390 1.2e-13 50.7 44.8 2 6 0.00018 0.11 12.5 1.6 2 24 254 276 254 279 0.91 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF135-202 - 390 1.2e-13 50.7 44.8 3 6 3.4e-05 0.022 14.8 0.2 2 24 282 304 282 307 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF135-202 - 390 1.2e-13 50.7 44.8 4 6 0.0002 0.13 12.3 1.4 2 12 310 320 310 320 0.95 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF135-202 - 390 1.2e-13 50.7 44.8 5 6 0.00036 0.23 11.5 0.4 2 12 338 348 338 360 0.85 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF135-202 - 390 1.2e-13 50.7 44.8 6 6 0.0052 3.3 7.8 4.1 2 24 366 388 366 390 0.96 C2H2-type zinc finger zf-C2H2_jaz PF12171.8 27 ZNF135-202 - 390 8.5e-09 35.5 26.4 1 6 0.00078 0.5 10.7 0.9 2 20 226 244 225 248 0.90 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF135-202 - 390 8.5e-09 35.5 26.4 2 6 0.00047 0.3 11.4 0.1 2 22 254 274 253 274 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF135-202 - 390 8.5e-09 35.5 26.4 3 6 0.054 34 4.9 0.1 2 23 282 303 281 304 0.81 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF135-202 - 390 8.5e-09 35.5 26.4 4 6 0.0018 1.2 9.5 1.0 2 24 310 332 309 332 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF135-202 - 390 8.5e-09 35.5 26.4 5 6 0.02 13 6.3 0.1 2 22 338 358 337 358 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF135-202 - 390 8.5e-09 35.5 26.4 6 6 0.0045 2.9 8.3 0.4 4 24 368 388 365 388 0.92 Zinc-finger double-stranded RNA-binding Zn-ribbon_8 PF09723.10 40 ZNF135-202 - 390 3.2e-07 30.4 30.6 1 6 0.0076 4.8 7.4 5.7 6 32 226 259 225 264 0.82 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF135-202 - 390 3.2e-07 30.4 30.6 2 6 0.0023 1.4 9.1 4.5 6 35 254 290 253 294 0.86 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF135-202 - 390 3.2e-07 30.4 30.6 3 6 0.00041 0.26 11.4 0.1 6 21 282 297 280 304 0.83 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF135-202 - 390 3.2e-07 30.4 30.6 4 6 0.0002 0.13 12.4 6.9 6 38 310 349 309 351 0.82 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF135-202 - 390 3.2e-07 30.4 30.6 5 6 0.0019 1.2 9.3 5.3 6 34 338 373 336 376 0.83 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF135-202 - 390 3.2e-07 30.4 30.6 6 6 0.0058 3.7 7.7 0.3 6 20 366 380 365 388 0.79 Zinc ribbon domain # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF135-202.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF135-202.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF135-202.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF135-202.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF135-202.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 18:59:59 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZNF135-203 - 682 1.3e-133 430.1 126.6 1 17 0.00015 0.15 12.5 4.4 11 26 234 249 230 249 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF135-203 - 682 1.3e-133 430.1 126.6 2 17 8.9e-09 8.8e-06 25.9 2.1 2 26 253 277 252 277 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF135-203 - 682 1.3e-133 430.1 126.6 3 17 1.5e-11 1.5e-08 34.7 0.7 1 25 280 304 280 305 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF135-203 - 682 1.3e-133 430.1 126.6 4 17 1.3e-11 1.3e-08 34.9 0.5 3 25 310 332 309 332 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF135-203 - 682 1.3e-133 430.1 126.6 5 17 6.8e-12 6.8e-09 35.8 0.9 2 25 337 360 336 361 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF135-203 - 682 1.3e-133 430.1 126.6 6 17 6.3e-12 6.3e-09 35.9 1.4 1 26 364 389 364 389 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF135-203 - 682 1.3e-133 430.1 126.6 7 17 2.6e-12 2.5e-09 37.1 1.5 1 25 392 416 392 417 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF135-203 - 682 1.3e-133 430.1 126.6 8 17 4.5e-11 4.5e-08 33.2 0.2 3 25 422 444 421 445 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF135-203 - 682 1.3e-133 430.1 126.6 9 17 3.2e-09 3.1e-06 27.3 1.6 2 26 449 473 449 473 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF135-203 - 682 1.3e-133 430.1 126.6 10 17 2e-12 2e-09 37.5 0.4 1 25 476 500 476 501 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF135-203 - 682 1.3e-133 430.1 126.6 11 17 9.5e-12 9.5e-09 35.3 1.8 1 26 504 529 504 529 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF135-203 - 682 1.3e-133 430.1 126.6 12 17 1.8e-11 1.8e-08 34.4 0.3 1 25 532 556 532 557 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF135-203 - 682 1.3e-133 430.1 126.6 13 17 2.4e-10 2.4e-07 30.8 0.1 3 25 562 584 561 585 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF135-203 - 682 1.3e-133 430.1 126.6 14 17 2.9e-08 2.9e-05 24.3 1.4 4 26 591 613 589 613 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF135-203 - 682 1.3e-133 430.1 126.6 15 17 2.4e-11 2.4e-08 34.0 1.5 1 25 616 640 616 641 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF135-203 - 682 1.3e-133 430.1 126.6 16 17 9e-11 8.9e-08 32.2 2.4 1 26 644 669 644 669 0.97 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF135-203 - 682 1.3e-133 430.1 126.6 17 17 0.032 32 5.2 0.5 1 11 672 682 672 682 0.92 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZNF135-203 - 682 2.1e-95 308.2 128.3 1 16 3e-08 3e-05 24.2 2.8 1 23 238 260 238 260 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF135-203 - 682 2.1e-95 308.2 128.3 2 16 6.6e-08 6.5e-05 23.2 1.7 1 23 266 288 266 288 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF135-203 - 682 2.1e-95 308.2 128.3 3 16 4.9e-07 0.00049 20.4 0.5 1 23 294 316 294 316 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF135-203 - 682 2.1e-95 308.2 128.3 4 16 2.6e-07 0.00026 21.3 2.2 1 23 322 344 322 344 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF135-203 - 682 2.1e-95 308.2 128.3 5 16 2.3e-08 2.2e-05 24.6 1.0 1 23 350 372 350 372 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF135-203 - 682 2.1e-95 308.2 128.3 6 16 8.2e-10 8.1e-07 29.2 1.5 1 23 378 400 378 400 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF135-203 - 682 2.1e-95 308.2 128.3 7 16 1.5e-07 0.00015 22.0 0.7 1 23 406 428 406 428 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF135-203 - 682 2.1e-95 308.2 128.3 8 16 3e-08 3e-05 24.2 0.2 1 23 434 456 434 456 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF135-203 - 682 2.1e-95 308.2 128.3 9 16 2e-07 0.0002 21.6 2.2 3 23 464 484 462 484 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF135-203 - 682 2.1e-95 308.2 128.3 10 16 2.2e-08 2.2e-05 24.7 2.2 1 23 490 512 490 512 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF135-203 - 682 2.1e-95 308.2 128.3 11 16 4.9e-10 4.9e-07 29.9 1.8 1 23 518 540 518 540 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF135-203 - 682 2.1e-95 308.2 128.3 12 16 8.2e-07 0.00081 19.7 0.1 1 23 546 568 546 568 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF135-203 - 682 2.1e-95 308.2 128.3 13 16 1.2e-08 1.2e-05 25.4 0.2 1 23 574 596 574 596 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF135-203 - 682 2.1e-95 308.2 128.3 14 16 1.3e-07 0.00012 22.3 2.2 3 23 604 624 602 624 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF135-203 - 682 2.1e-95 308.2 128.3 15 16 6e-09 6e-06 26.4 5.3 1 23 630 652 630 652 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF135-203 - 682 2.1e-95 308.2 128.3 16 16 2.1e-09 2.1e-06 27.9 2.8 1 23 658 680 658 680 0.98 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZNF135-203 - 682 8.4e-50 163.1 121.7 1 16 0.0001 0.1 13.5 2.5 1 23 238 260 238 261 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF135-203 - 682 8.4e-50 163.1 121.7 2 16 0.00017 0.16 12.8 1.4 1 23 266 288 266 289 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF135-203 - 682 8.4e-50 163.1 121.7 3 16 1.3e-06 0.0013 19.4 0.3 1 23 294 316 294 317 0.97 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF135-203 - 682 8.4e-50 163.1 121.7 4 16 5.5e-06 0.0055 17.5 2.1 1 23 322 344 322 345 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF135-203 - 682 8.4e-50 163.1 121.7 5 16 6.9e-05 0.068 14.0 0.9 1 23 350 372 350 373 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF135-203 - 682 8.4e-50 163.1 121.7 6 16 5.9e-05 0.059 14.2 1.4 1 23 378 400 378 401 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF135-203 - 682 8.4e-50 163.1 121.7 7 16 1.5e-05 0.015 16.1 0.5 1 23 406 428 406 429 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF135-203 - 682 8.4e-50 163.1 121.7 8 16 0.00012 0.12 13.2 0.2 1 23 434 456 434 457 0.81 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF135-203 - 682 8.4e-50 163.1 121.7 9 16 1.6e-05 0.016 16.0 1.8 2 23 463 484 462 485 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF135-203 - 682 8.4e-50 163.1 121.7 10 16 1.9e-05 0.019 15.7 1.7 1 23 490 512 490 513 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF135-203 - 682 8.4e-50 163.1 121.7 11 16 7.7e-05 0.077 13.9 1.4 1 23 518 540 518 541 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF135-203 - 682 8.4e-50 163.1 121.7 12 16 2.8e-05 0.028 15.2 0.1 1 23 546 568 546 569 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF135-203 - 682 8.4e-50 163.1 121.7 13 16 4.2e-05 0.042 14.7 0.2 1 23 574 596 574 597 0.88 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF135-203 - 682 8.4e-50 163.1 121.7 14 16 1.8e-05 0.018 15.9 1.9 2 23 603 624 602 625 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF135-203 - 682 8.4e-50 163.1 121.7 15 16 6.3e-05 0.063 14.1 3.5 1 23 630 652 630 653 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF135-203 - 682 8.4e-50 163.1 121.7 16 16 5.1e-05 0.051 14.4 1.9 1 23 658 680 658 681 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF135-203 - 682 1.3e-23 82.4 127.6 1 16 1.6e-05 0.016 15.2 3.9 2 24 238 260 238 263 0.95 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF135-203 - 682 1.3e-23 82.4 127.6 2 16 0.00022 0.22 11.6 1.6 2 24 266 288 266 291 0.91 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF135-203 - 682 1.3e-23 82.4 127.6 3 16 4.2e-05 0.042 13.9 0.2 2 24 294 316 294 319 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF135-203 - 682 1.3e-23 82.4 127.6 4 16 0.00024 0.23 11.5 1.4 2 12 322 332 322 332 0.95 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF135-203 - 682 1.3e-23 82.4 127.6 5 16 0.00043 0.43 10.6 0.4 2 12 350 360 350 372 0.85 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF135-203 - 682 1.3e-23 82.4 127.6 6 16 0.016 16 5.7 2.4 2 24 378 400 378 403 0.89 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF135-203 - 682 1.3e-23 82.4 127.6 7 16 7.9e-06 0.0078 16.2 0.5 2 24 406 428 406 431 0.95 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF135-203 - 682 1.3e-23 82.4 127.6 8 16 0.00079 0.79 9.8 0.4 2 24 434 456 434 459 0.92 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF135-203 - 682 1.3e-23 82.4 127.6 9 16 0.0015 1.5 8.9 3.1 2 24 462 484 462 487 0.90 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF135-203 - 682 1.3e-23 82.4 127.6 10 16 0.0008 0.8 9.8 1.6 2 20 490 508 490 513 0.79 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF135-203 - 682 1.3e-23 82.4 127.6 11 16 0.0053 5.3 7.2 1.7 2 24 518 540 518 543 0.90 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF135-203 - 682 1.3e-23 82.4 127.6 12 16 0.0014 1.4 9.0 0.1 2 21 546 565 546 570 0.82 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF135-203 - 682 1.3e-23 82.4 127.6 13 16 0.004 4 7.6 0.3 2 12 574 584 574 599 0.78 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF135-203 - 682 1.3e-23 82.4 127.6 14 16 0.0012 1.2 9.2 3.4 2 24 602 624 602 627 0.90 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF135-203 - 682 1.3e-23 82.4 127.6 15 16 0.0019 1.9 8.6 3.0 2 24 630 652 630 655 0.91 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF135-203 - 682 1.3e-23 82.4 127.6 16 16 0.061 60 3.8 2.8 2 24 658 680 658 682 0.93 C2H2-type zinc finger KRAB PF01352.27 42 ZNF135-203 - 682 1e-22 79.5 0.8 1 2 3.7e-25 3.7e-22 77.7 0.3 2 42 26 66 25 66 0.98 KRAB box KRAB PF01352.27 42 ZNF135-203 - 682 1e-22 79.5 0.8 2 2 1.7 1.7e+03 -1.3 0.0 9 25 171 187 169 189 0.87 KRAB box Zn-ribbon_8 PF09723.10 40 ZNF135-203 - 682 1e-19 70.3 86.8 1 15 0.0073 7.3 6.8 5.4 6 32 238 271 237 277 0.82 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF135-203 - 682 1e-19 70.3 86.8 2 15 0.0027 2.6 8.2 4.3 6 35 266 302 265 306 0.86 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF135-203 - 682 1e-19 70.3 86.8 3 15 0.00052 0.51 10.5 0.1 6 21 294 309 293 316 0.83 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF135-203 - 682 1e-19 70.3 86.8 4 15 0.00018 0.18 11.9 6.4 6 38 322 361 321 363 0.82 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF135-203 - 682 1e-19 70.3 86.8 5 15 0.01 10 6.3 0.5 6 16 350 360 349 373 0.83 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF135-203 - 682 1e-19 70.3 86.8 6 15 3.3e-05 0.033 14.3 4.0 6 37 378 416 377 418 0.91 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF135-203 - 682 1e-19 70.3 86.8 7 15 0.00023 0.23 11.6 5.2 6 35 406 442 405 446 0.86 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF135-203 - 682 1e-19 70.3 86.8 8 15 0.0002 0.2 11.8 4.0 6 35 434 470 433 474 0.92 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF135-203 - 682 1e-19 70.3 86.8 9 15 0.00056 0.56 10.4 4.7 6 37 462 500 461 501 0.76 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF135-203 - 682 1e-19 70.3 86.8 10 15 0.00022 0.22 11.7 4.8 6 34 490 525 488 528 0.92 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF135-203 - 682 1e-19 70.3 86.8 11 15 9.1e-06 0.0091 16.1 3.2 6 36 518 555 517 559 0.91 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF135-203 - 682 1e-19 70.3 86.8 12 15 2.4e-05 0.024 14.8 2.7 6 34 546 581 545 584 0.89 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF135-203 - 682 1e-19 70.3 86.8 13 15 6.1e-06 0.006 16.7 2.0 6 34 574 609 573 614 0.93 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF135-203 - 682 1e-19 70.3 86.8 14 15 0.00019 0.19 11.9 4.4 6 35 630 666 629 669 0.88 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF135-203 - 682 1e-19 70.3 86.8 15 15 0.0054 5.4 7.2 0.2 6 20 658 672 657 679 0.80 Zinc ribbon domain zf-C2H2_11 PF16622.5 29 ZNF135-203 - 682 1.1e-15 57.0 92.8 1 16 0.0039 3.9 7.3 0.2 5 23 238 256 235 259 0.84 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF135-203 - 682 1.1e-15 57.0 92.8 2 16 1.9 1.9e+03 -1.2 0.9 7 26 268 287 266 288 0.84 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF135-203 - 682 1.1e-15 57.0 92.8 3 16 0.0069 6.9 6.5 0.1 5 15 294 304 291 314 0.79 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF135-203 - 682 1.1e-15 57.0 92.8 4 16 0.019 19 5.1 0.6 6 23 323 340 320 343 0.90 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF135-203 - 682 1.1e-15 57.0 92.8 5 16 0.0034 3.3 7.5 0.6 6 26 351 371 348 372 0.94 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF135-203 - 682 1.1e-15 57.0 92.8 6 16 7.8e-06 0.0078 15.9 0.6 5 26 378 399 375 400 0.94 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF135-203 - 682 1.1e-15 57.0 92.8 7 16 0.036 36 4.2 0.1 6 23 407 424 404 427 0.82 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF135-203 - 682 1.1e-15 57.0 92.8 8 16 0.0032 3.2 7.6 0.1 6 26 435 455 432 456 0.93 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF135-203 - 682 1.1e-15 57.0 92.8 9 16 0.00066 0.66 9.8 0.7 7 23 464 480 461 483 0.93 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF135-203 - 682 1.1e-15 57.0 92.8 10 16 0.13 1.3e+02 2.5 0.9 6 26 491 511 488 512 0.89 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF135-203 - 682 1.1e-15 57.0 92.8 11 16 0.00014 0.14 11.9 0.4 6 26 519 539 516 540 0.93 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF135-203 - 682 1.1e-15 57.0 92.8 12 16 0.011 11 5.9 0.1 6 26 547 567 544 568 0.82 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF135-203 - 682 1.1e-15 57.0 92.8 13 16 0.0057 5.6 6.8 0.3 6 26 575 595 572 598 0.82 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF135-203 - 682 1.1e-15 57.0 92.8 14 16 0.00084 0.84 9.5 1.0 7 23 604 620 601 623 0.93 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF135-203 - 682 1.1e-15 57.0 92.8 15 16 0.044 44 4.0 1.3 6 26 631 651 628 652 0.93 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF135-203 - 682 1.1e-15 57.0 92.8 16 16 0.00012 0.12 12.1 0.5 7 24 660 677 657 679 0.92 zinc-finger C2H2-type XPA_N PF01286.18 32 ZNF135-203 - 682 8.2e-14 51.4 69.7 1 16 0.0013 1.3 9.1 0.1 3 14 239 250 237 256 0.88 XPA protein N-terminal XPA_N PF01286.18 32 ZNF135-203 - 682 8.2e-14 51.4 69.7 2 16 0.1 1e+02 3.1 0.1 3 14 267 278 265 283 0.89 XPA protein N-terminal XPA_N PF01286.18 32 ZNF135-203 - 682 8.2e-14 51.4 69.7 3 16 0.22 2.2e+02 2.0 0.1 3 12 295 304 293 305 0.87 XPA protein N-terminal XPA_N PF01286.18 32 ZNF135-203 - 682 8.2e-14 51.4 69.7 4 16 0.044 43 4.2 0.4 3 11 323 331 321 333 0.89 XPA protein N-terminal XPA_N PF01286.18 32 ZNF135-203 - 682 8.2e-14 51.4 69.7 5 16 0.0025 2.5 8.2 0.1 3 15 351 363 349 367 0.86 XPA protein N-terminal XPA_N PF01286.18 32 ZNF135-203 - 682 8.2e-14 51.4 69.7 6 16 0.018 18 5.5 0.2 3 14 379 390 377 395 0.89 XPA protein N-terminal XPA_N PF01286.18 32 ZNF135-203 - 682 8.2e-14 51.4 69.7 7 16 0.017 17 5.6 0.2 3 12 407 416 405 417 0.88 XPA protein N-terminal XPA_N PF01286.18 32 ZNF135-203 - 682 8.2e-14 51.4 69.7 8 16 0.0002 0.2 11.7 0.1 3 18 435 450 433 453 0.91 XPA protein N-terminal XPA_N PF01286.18 32 ZNF135-203 - 682 8.2e-14 51.4 69.7 9 16 0.011 11 6.2 0.3 4 14 464 474 462 480 0.89 XPA protein N-terminal XPA_N PF01286.18 32 ZNF135-203 - 682 8.2e-14 51.4 69.7 10 16 0.012 12 6.0 0.1 3 15 491 503 489 508 0.86 XPA protein N-terminal XPA_N PF01286.18 32 ZNF135-203 - 682 8.2e-14 51.4 69.7 11 16 0.015 15 5.7 0.2 3 14 519 530 517 535 0.89 XPA protein N-terminal XPA_N PF01286.18 32 ZNF135-203 - 682 8.2e-14 51.4 69.7 12 16 0.26 2.6e+02 1.8 0.1 3 12 547 556 545 557 0.87 XPA protein N-terminal XPA_N PF01286.18 32 ZNF135-203 - 682 8.2e-14 51.4 69.7 13 16 0.006 6 7.0 0.1 3 17 575 589 573 591 0.91 XPA protein N-terminal XPA_N PF01286.18 32 ZNF135-203 - 682 8.2e-14 51.4 69.7 14 16 0.019 19 5.4 0.4 4 14 604 614 602 620 0.89 XPA protein N-terminal XPA_N PF01286.18 32 ZNF135-203 - 682 8.2e-14 51.4 69.7 15 16 0.01 10 6.3 0.1 3 15 631 643 629 648 0.86 XPA protein N-terminal XPA_N PF01286.18 32 ZNF135-203 - 682 8.2e-14 51.4 69.7 16 16 0.017 17 5.5 0.1 4 14 660 670 657 675 0.89 XPA protein N-terminal zf-C2H2_jaz PF12171.8 27 ZNF135-203 - 682 8.9e-13 48.2 76.0 1 16 0.00097 0.97 9.8 0.9 2 20 238 256 237 260 0.90 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF135-203 - 682 8.9e-13 48.2 76.0 2 16 0.00058 0.58 10.5 0.1 2 22 266 286 265 286 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF135-203 - 682 8.9e-13 48.2 76.0 3 16 0.067 66 4.0 0.1 2 23 294 315 293 316 0.81 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF135-203 - 682 8.9e-13 48.2 76.0 4 16 0.0023 2.3 8.6 1.0 2 24 322 344 321 344 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF135-203 - 682 8.9e-13 48.2 76.0 5 16 0.024 24 5.4 0.1 2 22 350 370 349 370 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF135-203 - 682 8.9e-13 48.2 76.0 6 16 0.0069 6.9 7.1 0.1 4 22 380 398 377 398 0.91 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF135-203 - 682 8.9e-13 48.2 76.0 7 16 0.29 2.9e+02 1.9 0.1 2 12 406 416 405 428 0.72 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF135-203 - 682 8.9e-13 48.2 76.0 8 16 0.089 88 3.6 0.0 2 21 434 453 433 454 0.89 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF135-203 - 682 8.9e-13 48.2 76.0 9 16 0.00032 0.32 11.3 1.3 4 24 464 484 462 484 0.95 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF135-203 - 682 8.9e-13 48.2 76.0 10 16 0.11 1.1e+02 3.3 0.2 2 22 490 510 489 510 0.91 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF135-203 - 682 8.9e-13 48.2 76.0 11 16 0.0043 4.2 7.8 0.2 2 22 518 538 517 538 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF135-203 - 682 8.9e-13 48.2 76.0 12 16 7.2 7.2e+03 -2.5 0.1 2 11 546 555 545 556 0.84 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF135-203 - 682 8.9e-13 48.2 76.0 13 16 0.37 3.7e+02 1.6 0.0 2 22 574 594 573 594 0.90 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF135-203 - 682 8.9e-13 48.2 76.0 14 16 0.00094 0.93 9.9 1.5 4 24 604 624 602 624 0.95 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF135-203 - 682 8.9e-13 48.2 76.0 15 16 0.064 64 4.0 0.3 2 21 630 649 629 650 0.90 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF135-203 - 682 8.9e-13 48.2 76.0 16 16 0.013 13 6.2 0.3 2 24 658 680 657 680 0.91 Zinc-finger double-stranded RNA-binding zf_UBZ PF18439.1 32 ZNF135-203 - 682 2.6e-12 46.1 80.6 1 16 0.00018 0.18 11.4 0.8 3 20 238 256 236 257 0.93 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF135-203 - 682 2.6e-12 46.1 80.6 2 16 2.7 2.7e+03 -2.0 0.2 3 13 266 276 265 285 0.69 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF135-203 - 682 2.6e-12 46.1 80.6 3 16 0.054 54 3.5 0.1 3 13 294 304 292 313 0.84 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF135-203 - 682 2.6e-12 46.1 80.6 4 16 0.0013 1.3 8.7 0.3 3 20 322 340 320 341 0.83 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF135-203 - 682 2.6e-12 46.1 80.6 5 16 0.0044 4.4 7.0 0.3 3 20 350 368 348 369 0.83 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF135-203 - 682 2.6e-12 46.1 80.6 6 16 0.002 2 8.1 0.2 3 21 378 397 376 397 0.87 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF135-203 - 682 2.6e-12 46.1 80.6 7 16 0.082 81 2.9 0.2 3 12 406 415 404 425 0.84 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF135-203 - 682 2.6e-12 46.1 80.6 8 16 0.00063 0.63 9.7 0.1 3 20 434 452 432 453 0.92 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF135-203 - 682 2.6e-12 46.1 80.6 9 16 0.003 3 7.5 0.3 3 21 462 481 460 481 0.89 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF135-203 - 682 2.6e-12 46.1 80.6 10 16 0.0042 4.1 7.1 0.5 3 21 490 509 488 509 0.86 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF135-203 - 682 2.6e-12 46.1 80.6 11 16 0.0052 5.2 6.8 0.3 3 21 518 537 516 537 0.87 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF135-203 - 682 2.6e-12 46.1 80.6 12 16 0.13 1.3e+02 2.3 0.1 3 14 546 557 544 565 0.82 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF135-203 - 682 2.6e-12 46.1 80.6 13 16 0.0037 3.7 7.2 0.1 3 21 574 593 572 593 0.92 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF135-203 - 682 2.6e-12 46.1 80.6 14 16 0.0025 2.5 7.7 0.3 3 21 602 621 600 621 0.89 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF135-203 - 682 2.6e-12 46.1 80.6 15 16 0.021 21 4.8 0.7 3 20 630 648 628 649 0.82 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF135-203 - 682 2.6e-12 46.1 80.6 16 16 0.018 17 5.1 0.1 3 21 658 677 656 677 0.85 Ubiquitin-Binding Zinc Finger zinc_ribbon_15 PF17032.5 86 ZNF135-203 - 682 3.7e-12 46.8 63.2 1 14 0.047 47 4.8 7.5 36 76 236 276 226 305 0.75 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF135-203 - 682 3.7e-12 46.8 63.2 2 14 0.00043 0.43 11.4 1.4 31 81 287 337 282 340 0.86 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF135-203 - 682 3.7e-12 46.8 63.2 3 14 0.00058 0.58 11.0 1.2 31 78 315 362 308 366 0.84 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF135-203 - 682 3.7e-12 46.8 63.2 4 14 0.0015 1.5 9.6 1.0 35 78 347 390 337 396 0.87 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF135-203 - 682 3.7e-12 46.8 63.2 5 14 0.00056 0.56 11.0 3.8 29 76 369 416 352 420 0.86 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF135-203 - 682 3.7e-12 46.8 63.2 6 14 0.003 3 8.7 1.0 32 77 400 445 393 449 0.86 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF135-203 - 682 3.7e-12 46.8 63.2 7 14 0.0013 1.3 9.8 0.6 31 78 427 474 418 477 0.83 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF135-203 - 682 3.7e-12 46.8 63.2 8 14 0.00015 0.15 12.8 1.9 33 78 457 502 451 505 0.86 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF135-203 - 682 3.7e-12 46.8 63.2 9 14 0.00023 0.23 12.2 1.5 32 76 512 556 505 560 0.87 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF135-203 - 682 3.7e-12 46.8 63.2 10 14 0.0051 5.1 7.9 1.3 32 77 540 585 536 588 0.84 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF135-203 - 682 3.7e-12 46.8 63.2 11 14 0.00074 0.74 10.6 1.3 29 78 565 614 559 618 0.85 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF135-203 - 682 3.7e-12 46.8 63.2 12 14 2.6e-05 0.026 15.3 1.9 26 78 590 642 586 648 0.87 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF135-203 - 682 3.7e-12 46.8 63.2 13 14 0.00096 0.96 10.2 1.2 35 78 627 670 620 673 0.85 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF135-203 - 682 3.7e-12 46.8 63.2 14 14 0.22 2.1e+02 2.7 0.1 32 56 652 676 644 681 0.73 zinc-ribbon family zf-trcl PF13451.6 48 ZNF135-203 - 682 4.1e-07 29.8 58.4 1 13 0.027 27 4.7 2.0 2 19 235 252 234 278 0.73 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF135-203 - 682 4.1e-07 29.8 58.4 2 13 0.024 24 4.9 0.1 3 14 292 303 290 307 0.89 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF135-203 - 682 4.1e-07 29.8 58.4 3 13 0.021 21 5.1 3.7 3 42 320 358 318 362 0.68 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF135-203 - 682 4.1e-07 29.8 58.4 4 13 0.1 1e+02 2.9 0.0 3 15 376 388 374 394 0.84 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF135-203 - 682 4.1e-07 29.8 58.4 5 13 0.042 42 4.2 0.1 3 15 404 416 402 418 0.89 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF135-203 - 682 4.1e-07 29.8 58.4 6 13 0.39 3.9e+02 1.0 0.1 3 14 432 443 430 446 0.87 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF135-203 - 682 4.1e-07 29.8 58.4 7 13 0.092 91 3.1 2.3 3 43 460 499 459 503 0.60 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF135-203 - 682 4.1e-07 29.8 58.4 8 13 0.016 16 5.5 0.1 3 16 516 529 514 536 0.85 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF135-203 - 682 4.1e-07 29.8 58.4 9 13 0.12 1.2e+02 2.7 0.0 3 14 544 555 542 559 0.88 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF135-203 - 682 4.1e-07 29.8 58.4 10 13 0.13 1.3e+02 2.6 0.1 3 14 572 583 570 586 0.87 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF135-203 - 682 4.1e-07 29.8 58.4 11 13 0.067 67 3.5 0.0 2 16 599 613 598 618 0.83 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF135-203 - 682 4.1e-07 29.8 58.4 12 13 0.017 17 5.4 0.1 3 14 628 639 626 642 0.90 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF135-203 - 682 4.1e-07 29.8 58.4 13 13 0.0014 1.4 8.9 0.1 3 17 656 670 654 675 0.88 Probable zinc-ribbon domain # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF135-203.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF135-203.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF135-203.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF135-203.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF135-203.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:00:00 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZNF135-204 - 616 1.8e-134 432.8 126.6 1 17 0.00014 0.13 12.7 4.4 11 26 168 183 164 183 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF135-204 - 616 1.8e-134 432.8 126.6 2 17 8.3e-09 7.8e-06 26.1 2.1 2 26 187 211 186 211 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF135-204 - 616 1.8e-134 432.8 126.6 3 17 1.4e-11 1.3e-08 34.8 0.7 1 25 214 238 214 239 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF135-204 - 616 1.8e-134 432.8 126.6 4 17 1.2e-11 1.1e-08 35.1 0.5 3 25 244 266 243 266 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF135-204 - 616 1.8e-134 432.8 126.6 5 17 6.4e-12 6e-09 35.9 0.9 2 25 271 294 270 295 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF135-204 - 616 1.8e-134 432.8 126.6 6 17 5.9e-12 5.6e-09 36.0 1.4 1 26 298 323 298 323 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF135-204 - 616 1.8e-134 432.8 126.6 7 17 2.4e-12 2.3e-09 37.3 1.5 1 25 326 350 326 351 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF135-204 - 616 1.8e-134 432.8 126.6 8 17 4.2e-11 4e-08 33.3 0.2 3 25 356 378 355 379 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF135-204 - 616 1.8e-134 432.8 126.6 9 17 3e-09 2.8e-06 27.5 1.6 2 26 383 407 383 407 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF135-204 - 616 1.8e-134 432.8 126.6 10 17 1.8e-12 1.7e-09 37.6 0.4 1 25 410 434 410 435 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF135-204 - 616 1.8e-134 432.8 126.6 11 17 8.9e-12 8.4e-09 35.5 1.8 1 26 438 463 438 463 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF135-204 - 616 1.8e-134 432.8 126.6 12 17 1.7e-11 1.6e-08 34.6 0.3 1 25 466 490 466 491 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF135-204 - 616 1.8e-134 432.8 126.6 13 17 2.3e-10 2.2e-07 31.0 0.1 3 25 496 518 495 519 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF135-204 - 616 1.8e-134 432.8 126.6 14 17 2.8e-08 2.6e-05 24.4 1.4 4 26 525 547 523 547 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF135-204 - 616 1.8e-134 432.8 126.6 15 17 2.2e-11 2.1e-08 34.2 1.5 1 25 550 574 550 575 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF135-204 - 616 1.8e-134 432.8 126.6 16 17 8.4e-11 7.9e-08 32.4 2.4 1 26 578 603 578 603 0.97 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF135-204 - 616 1.8e-134 432.8 126.6 17 17 0.031 29 5.3 0.5 1 11 606 616 606 616 0.92 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZNF135-204 - 616 3.3e-96 310.7 128.3 1 16 2.9e-08 2.7e-05 24.4 2.8 1 23 172 194 172 194 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF135-204 - 616 3.3e-96 310.7 128.3 2 16 6.1e-08 5.8e-05 23.3 1.7 1 23 200 222 200 222 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF135-204 - 616 3.3e-96 310.7 128.3 3 16 4.6e-07 0.00044 20.6 0.5 1 23 228 250 228 250 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF135-204 - 616 3.3e-96 310.7 128.3 4 16 2.4e-07 0.00023 21.4 2.2 1 23 256 278 256 278 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF135-204 - 616 3.3e-96 310.7 128.3 5 16 2.1e-08 2e-05 24.8 1.0 1 23 284 306 284 306 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF135-204 - 616 3.3e-96 310.7 128.3 6 16 7.7e-10 7.2e-07 29.3 1.5 1 23 312 334 312 334 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF135-204 - 616 3.3e-96 310.7 128.3 7 16 1.4e-07 0.00013 22.2 0.7 1 23 340 362 340 362 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF135-204 - 616 3.3e-96 310.7 128.3 8 16 2.9e-08 2.7e-05 24.4 0.2 1 23 368 390 368 390 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF135-204 - 616 3.3e-96 310.7 128.3 9 16 1.9e-07 0.00018 21.8 2.2 3 23 398 418 396 418 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF135-204 - 616 3.3e-96 310.7 128.3 10 16 2e-08 1.9e-05 24.8 2.2 1 23 424 446 424 446 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF135-204 - 616 3.3e-96 310.7 128.3 11 16 4.6e-10 4.3e-07 30.0 1.8 1 23 452 474 452 474 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF135-204 - 616 3.3e-96 310.7 128.3 12 16 7.7e-07 0.00072 19.9 0.1 1 23 480 502 480 502 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF135-204 - 616 3.3e-96 310.7 128.3 13 16 1.2e-08 1.1e-05 25.6 0.2 1 23 508 530 508 530 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF135-204 - 616 3.3e-96 310.7 128.3 14 16 1.2e-07 0.00011 22.4 2.2 3 23 538 558 536 558 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF135-204 - 616 3.3e-96 310.7 128.3 15 16 5.6e-09 5.3e-06 26.6 5.3 1 23 564 586 564 586 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF135-204 - 616 3.3e-96 310.7 128.3 16 16 1.9e-09 1.8e-06 28.1 2.8 1 23 592 614 592 614 0.98 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZNF135-204 - 616 1.3e-50 165.6 121.7 1 16 9.5e-05 0.089 13.7 2.5 1 23 172 194 172 195 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF135-204 - 616 1.3e-50 165.6 121.7 2 16 0.00015 0.15 13.0 1.4 1 23 200 222 200 223 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF135-204 - 616 1.3e-50 165.6 121.7 3 16 1.2e-06 0.0011 19.6 0.3 1 23 228 250 228 251 0.97 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF135-204 - 616 1.3e-50 165.6 121.7 4 16 5.1e-06 0.0048 17.6 2.1 1 23 256 278 256 279 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF135-204 - 616 1.3e-50 165.6 121.7 5 16 6.4e-05 0.061 14.2 0.9 1 23 284 306 284 307 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF135-204 - 616 1.3e-50 165.6 121.7 6 16 5.6e-05 0.052 14.4 1.4 1 23 312 334 312 335 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF135-204 - 616 1.3e-50 165.6 121.7 7 16 1.4e-05 0.013 16.2 0.5 1 23 340 362 340 363 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF135-204 - 616 1.3e-50 165.6 121.7 8 16 0.00012 0.11 13.4 0.2 1 23 368 390 368 391 0.81 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF135-204 - 616 1.3e-50 165.6 121.7 9 16 1.5e-05 0.014 16.2 1.8 2 23 397 418 396 419 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF135-204 - 616 1.3e-50 165.6 121.7 10 16 1.8e-05 0.017 15.9 1.7 1 23 424 446 424 447 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF135-204 - 616 1.3e-50 165.6 121.7 11 16 7.2e-05 0.068 14.0 1.4 1 23 452 474 452 475 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF135-204 - 616 1.3e-50 165.6 121.7 12 16 2.6e-05 0.025 15.4 0.1 1 23 480 502 480 503 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF135-204 - 616 1.3e-50 165.6 121.7 13 16 3.9e-05 0.037 14.9 0.2 1 23 508 530 508 531 0.88 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF135-204 - 616 1.3e-50 165.6 121.7 14 16 1.7e-05 0.016 16.0 1.9 2 23 537 558 536 559 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF135-204 - 616 1.3e-50 165.6 121.7 15 16 5.9e-05 0.056 14.3 3.5 1 23 564 586 564 587 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF135-204 - 616 1.3e-50 165.6 121.7 16 16 4.8e-05 0.045 14.6 1.9 1 23 592 614 592 615 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF135-204 - 616 2e-24 85.0 127.6 1 16 1.5e-05 0.014 15.3 3.9 2 24 172 194 172 197 0.95 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF135-204 - 616 2e-24 85.0 127.6 2 16 0.0002 0.19 11.7 1.6 2 24 200 222 200 225 0.91 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF135-204 - 616 2e-24 85.0 127.6 3 16 4e-05 0.038 14.0 0.2 2 24 228 250 228 253 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF135-204 - 616 2e-24 85.0 127.6 4 16 0.00022 0.21 11.6 1.4 2 12 256 266 256 266 0.95 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF135-204 - 616 2e-24 85.0 127.6 5 16 0.00041 0.39 10.8 0.4 2 12 284 294 284 306 0.85 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF135-204 - 616 2e-24 85.0 127.6 6 16 0.015 14 5.8 2.4 2 24 312 334 312 337 0.89 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF135-204 - 616 2e-24 85.0 127.6 7 16 7.4e-06 0.007 16.3 0.5 2 24 340 362 340 365 0.95 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF135-204 - 616 2e-24 85.0 127.6 8 16 0.00074 0.7 10.0 0.4 2 24 368 390 368 393 0.92 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF135-204 - 616 2e-24 85.0 127.6 9 16 0.0014 1.3 9.1 3.1 2 24 396 418 396 421 0.90 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF135-204 - 616 2e-24 85.0 127.6 10 16 0.00075 0.71 9.9 1.6 2 20 424 442 424 447 0.79 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF135-204 - 616 2e-24 85.0 127.6 11 16 0.005 4.7 7.3 1.7 2 24 452 474 452 477 0.90 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF135-204 - 616 2e-24 85.0 127.6 12 16 0.0013 1.3 9.1 0.1 2 21 480 499 480 504 0.82 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF135-204 - 616 2e-24 85.0 127.6 13 16 0.0038 3.6 7.7 0.3 2 12 508 518 508 533 0.78 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF135-204 - 616 2e-24 85.0 127.6 14 16 0.0012 1.1 9.3 3.4 2 24 536 558 536 561 0.90 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF135-204 - 616 2e-24 85.0 127.6 15 16 0.0018 1.7 8.7 3.0 2 24 564 586 564 589 0.91 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF135-204 - 616 2e-24 85.0 127.6 16 16 0.057 54 4.0 2.8 2 24 592 614 592 616 0.93 C2H2-type zinc finger Zn-ribbon_8 PF09723.10 40 ZNF135-204 - 616 4.2e-20 71.6 87.5 1 15 0.01 9.6 6.4 5.9 6 32 172 205 171 210 0.82 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF135-204 - 616 4.2e-20 71.6 87.5 2 15 0.0051 4.8 7.4 5.1 6 35 200 236 199 239 0.88 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF135-204 - 616 4.2e-20 71.6 87.5 3 15 0.00049 0.46 10.6 0.1 6 21 228 243 227 250 0.83 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF135-204 - 616 4.2e-20 71.6 87.5 4 15 0.00018 0.17 12.0 6.5 6 38 256 295 255 297 0.82 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF135-204 - 616 4.2e-20 71.6 87.5 5 15 0.01 9.7 6.4 0.5 6 16 284 294 282 304 0.83 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF135-204 - 616 4.2e-20 71.6 87.5 6 15 2.5e-05 0.024 14.8 3.8 6 37 312 350 311 353 0.91 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF135-204 - 616 4.2e-20 71.6 87.5 7 15 0.00027 0.25 11.5 5.4 6 35 340 376 339 379 0.86 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF135-204 - 616 4.2e-20 71.6 87.5 8 15 0.00023 0.21 11.7 4.2 6 35 368 404 367 407 0.92 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF135-204 - 616 4.2e-20 71.6 87.5 9 15 0.00045 0.43 10.7 4.7 6 37 396 434 394 436 0.77 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF135-204 - 616 4.2e-20 71.6 87.5 10 15 0.0002 0.19 11.9 4.9 6 34 424 459 423 463 0.92 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF135-204 - 616 4.2e-20 71.6 87.5 11 15 7.7e-06 0.0073 16.4 3.1 6 36 452 489 451 493 0.91 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF135-204 - 616 4.2e-20 71.6 87.5 12 15 1.9e-05 0.018 15.1 2.7 6 35 480 516 479 519 0.89 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF135-204 - 616 4.2e-20 71.6 87.5 13 15 6.5e-06 0.0062 16.6 2.2 6 34 508 543 507 547 0.93 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF135-204 - 616 4.2e-20 71.6 87.5 14 15 0.00017 0.16 12.1 4.3 6 35 564 600 563 603 0.88 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF135-204 - 616 4.2e-20 71.6 87.5 15 15 0.0051 4.8 7.4 0.2 6 20 592 606 591 613 0.80 Zinc ribbon domain zf-C2H2_11 PF16622.5 29 ZNF135-204 - 616 2.4e-16 59.2 92.8 1 16 0.0036 3.4 7.5 0.2 5 23 172 190 169 193 0.84 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF135-204 - 616 2.4e-16 59.2 92.8 2 16 1.8 1.7e+03 -1.1 0.9 7 26 202 221 200 222 0.84 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF135-204 - 616 2.4e-16 59.2 92.8 3 16 0.0065 6.1 6.7 0.1 5 15 228 238 225 248 0.79 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF135-204 - 616 2.4e-16 59.2 92.8 4 16 0.018 17 5.3 0.6 6 23 257 274 254 277 0.90 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF135-204 - 616 2.4e-16 59.2 92.8 5 16 0.0032 3 7.7 0.6 6 26 285 305 282 306 0.94 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF135-204 - 616 2.4e-16 59.2 92.8 6 16 7.4e-06 0.0069 16.1 0.6 5 26 312 333 309 334 0.94 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF135-204 - 616 2.4e-16 59.2 92.8 7 16 0.034 32 4.4 0.1 6 23 341 358 338 361 0.82 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF135-204 - 616 2.4e-16 59.2 92.8 8 16 0.003 2.8 7.8 0.1 6 26 369 389 366 390 0.93 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF135-204 - 616 2.4e-16 59.2 92.8 9 16 0.00062 0.59 9.9 0.7 7 23 398 414 395 417 0.93 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF135-204 - 616 2.4e-16 59.2 92.8 10 16 0.12 1.1e+02 2.7 0.9 6 26 425 445 422 446 0.89 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF135-204 - 616 2.4e-16 59.2 92.8 11 16 0.00013 0.12 12.1 0.4 6 26 453 473 450 474 0.93 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF135-204 - 616 2.4e-16 59.2 92.8 12 16 0.01 9.5 6.1 0.1 6 26 481 501 478 502 0.82 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF135-204 - 616 2.4e-16 59.2 92.8 13 16 0.0053 5 7.0 0.3 6 26 509 529 506 532 0.82 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF135-204 - 616 2.4e-16 59.2 92.8 14 16 0.00079 0.75 9.6 1.0 7 23 538 554 535 557 0.93 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF135-204 - 616 2.4e-16 59.2 92.8 15 16 0.041 39 4.1 1.3 6 26 565 585 562 586 0.93 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF135-204 - 616 2.4e-16 59.2 92.8 16 16 0.00011 0.11 12.3 0.5 7 24 594 611 591 613 0.92 zinc-finger C2H2-type XPA_N PF01286.18 32 ZNF135-204 - 616 1.5e-14 53.7 69.7 1 16 0.0013 1.2 9.2 0.1 3 14 173 184 171 190 0.88 XPA protein N-terminal XPA_N PF01286.18 32 ZNF135-204 - 616 1.5e-14 53.7 69.7 2 16 0.097 91 3.2 0.1 3 14 201 212 199 217 0.89 XPA protein N-terminal XPA_N PF01286.18 32 ZNF135-204 - 616 1.5e-14 53.7 69.7 3 16 0.21 1.9e+02 2.2 0.1 3 12 229 238 227 239 0.87 XPA protein N-terminal XPA_N PF01286.18 32 ZNF135-204 - 616 1.5e-14 53.7 69.7 4 16 0.041 39 4.4 0.4 3 11 257 265 255 267 0.89 XPA protein N-terminal XPA_N PF01286.18 32 ZNF135-204 - 616 1.5e-14 53.7 69.7 5 16 0.0023 2.2 8.4 0.1 3 15 285 297 283 301 0.86 XPA protein N-terminal XPA_N PF01286.18 32 ZNF135-204 - 616 1.5e-14 53.7 69.7 6 16 0.017 16 5.6 0.2 3 14 313 324 311 329 0.89 XPA protein N-terminal XPA_N PF01286.18 32 ZNF135-204 - 616 1.5e-14 53.7 69.7 7 16 0.016 15 5.7 0.2 3 12 341 350 339 351 0.88 XPA protein N-terminal XPA_N PF01286.18 32 ZNF135-204 - 616 1.5e-14 53.7 69.7 8 16 0.00019 0.18 11.9 0.1 3 18 369 384 367 387 0.91 XPA protein N-terminal XPA_N PF01286.18 32 ZNF135-204 - 616 1.5e-14 53.7 69.7 9 16 0.01 9.7 6.3 0.3 4 14 398 408 396 414 0.89 XPA protein N-terminal XPA_N PF01286.18 32 ZNF135-204 - 616 1.5e-14 53.7 69.7 10 16 0.011 11 6.2 0.1 3 15 425 437 423 442 0.86 XPA protein N-terminal XPA_N PF01286.18 32 ZNF135-204 - 616 1.5e-14 53.7 69.7 11 16 0.014 14 5.9 0.2 3 14 453 464 451 469 0.89 XPA protein N-terminal XPA_N PF01286.18 32 ZNF135-204 - 616 1.5e-14 53.7 69.7 12 16 0.24 2.3e+02 1.9 0.1 3 12 481 490 479 491 0.87 XPA protein N-terminal XPA_N PF01286.18 32 ZNF135-204 - 616 1.5e-14 53.7 69.7 13 16 0.0057 5.3 7.2 0.1 3 17 509 523 507 525 0.91 XPA protein N-terminal XPA_N PF01286.18 32 ZNF135-204 - 616 1.5e-14 53.7 69.7 14 16 0.018 17 5.6 0.4 4 14 538 548 536 554 0.89 XPA protein N-terminal XPA_N PF01286.18 32 ZNF135-204 - 616 1.5e-14 53.7 69.7 15 16 0.0095 9 6.4 0.1 3 15 565 577 563 582 0.86 XPA protein N-terminal XPA_N PF01286.18 32 ZNF135-204 - 616 1.5e-14 53.7 69.7 16 16 0.016 15 5.7 0.1 4 14 594 604 591 609 0.89 XPA protein N-terminal zf-C2H2_jaz PF12171.8 27 ZNF135-204 - 616 1.6e-13 50.6 76.0 1 16 0.00091 0.86 10.0 0.9 2 20 172 190 171 194 0.90 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF135-204 - 616 1.6e-13 50.6 76.0 2 16 0.00055 0.52 10.7 0.1 2 22 200 220 199 220 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF135-204 - 616 1.6e-13 50.6 76.0 3 16 0.063 59 4.1 0.1 2 23 228 249 227 250 0.81 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF135-204 - 616 1.6e-13 50.6 76.0 4 16 0.0021 2 8.8 1.0 2 24 256 278 255 278 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF135-204 - 616 1.6e-13 50.6 76.0 5 16 0.023 21 5.5 0.1 2 22 284 304 283 304 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF135-204 - 616 1.6e-13 50.6 76.0 6 16 0.0065 6.2 7.2 0.1 4 22 314 332 311 332 0.91 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF135-204 - 616 1.6e-13 50.6 76.0 7 16 0.27 2.6e+02 2.1 0.1 2 12 340 350 339 362 0.72 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF135-204 - 616 1.6e-13 50.6 76.0 8 16 0.083 79 3.7 0.0 2 21 368 387 367 388 0.89 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF135-204 - 616 1.6e-13 50.6 76.0 9 16 0.0003 0.28 11.5 1.3 4 24 398 418 396 418 0.95 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF135-204 - 616 1.6e-13 50.6 76.0 10 16 0.1 97 3.4 0.2 2 22 424 444 423 444 0.91 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF135-204 - 616 1.6e-13 50.6 76.0 11 16 0.004 3.8 7.9 0.2 2 22 452 472 451 472 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF135-204 - 616 1.6e-13 50.6 76.0 12 16 6.8 6.4e+03 -2.4 0.1 2 11 480 489 479 490 0.84 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF135-204 - 616 1.6e-13 50.6 76.0 13 16 0.35 3.3e+02 1.7 0.0 2 22 508 528 507 528 0.90 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF135-204 - 616 1.6e-13 50.6 76.0 14 16 0.00088 0.83 10.0 1.5 4 24 538 558 536 558 0.95 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF135-204 - 616 1.6e-13 50.6 76.0 15 16 0.061 57 4.2 0.3 2 21 564 583 563 584 0.90 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF135-204 - 616 1.6e-13 50.6 76.0 16 16 0.012 11 6.4 0.3 2 24 592 614 591 614 0.91 Zinc-finger double-stranded RNA-binding zf_UBZ PF18439.1 32 ZNF135-204 - 616 4.7e-13 48.5 80.6 1 16 0.00017 0.16 11.6 0.8 3 20 172 190 170 191 0.93 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF135-204 - 616 4.7e-13 48.5 80.6 2 16 2.6 2.4e+03 -1.8 0.2 3 13 200 210 199 219 0.69 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF135-204 - 616 4.7e-13 48.5 80.6 3 16 0.051 48 3.7 0.1 3 13 228 238 226 247 0.84 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF135-204 - 616 4.7e-13 48.5 80.6 4 16 0.0012 1.1 8.9 0.3 3 20 256 274 254 275 0.83 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF135-204 - 616 4.7e-13 48.5 80.6 5 16 0.0042 3.9 7.1 0.3 3 20 284 302 282 303 0.83 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF135-204 - 616 4.7e-13 48.5 80.6 6 16 0.0019 1.8 8.2 0.2 3 21 312 331 310 331 0.87 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF135-204 - 616 4.7e-13 48.5 80.6 7 16 0.077 73 3.1 0.2 3 12 340 349 338 359 0.84 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF135-204 - 616 4.7e-13 48.5 80.6 8 16 0.00059 0.56 9.9 0.1 3 20 368 386 366 387 0.92 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF135-204 - 616 4.7e-13 48.5 80.6 9 16 0.0028 2.6 7.7 0.3 3 21 396 415 394 415 0.89 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF135-204 - 616 4.7e-13 48.5 80.6 10 16 0.0039 3.7 7.2 0.5 3 21 424 443 422 443 0.86 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF135-204 - 616 4.7e-13 48.5 80.6 11 16 0.0049 4.6 6.9 0.3 3 21 452 471 450 471 0.87 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF135-204 - 616 4.7e-13 48.5 80.6 12 16 0.12 1.1e+02 2.5 0.1 3 14 480 491 478 499 0.82 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF135-204 - 616 4.7e-13 48.5 80.6 13 16 0.0035 3.3 7.4 0.1 3 21 508 527 506 527 0.92 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF135-204 - 616 4.7e-13 48.5 80.6 14 16 0.0024 2.3 7.9 0.3 3 21 536 555 534 555 0.89 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF135-204 - 616 4.7e-13 48.5 80.6 15 16 0.02 18 5.0 0.7 3 20 564 582 562 583 0.82 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF135-204 - 616 4.7e-13 48.5 80.6 16 16 0.016 16 5.2 0.1 3 21 592 611 590 611 0.85 Ubiquitin-Binding Zinc Finger zinc_ribbon_15 PF17032.5 86 ZNF135-204 - 616 1.7e-12 47.9 63.6 1 13 0.0021 2 9.2 2.8 35 75 169 209 160 215 0.84 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF135-204 - 616 1.7e-12 47.9 63.6 2 13 0.00041 0.38 11.5 1.4 32 81 222 271 217 274 0.86 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF135-204 - 616 1.7e-12 47.9 63.6 3 13 0.00083 0.78 10.5 1.8 31 78 249 296 243 302 0.84 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF135-204 - 616 1.7e-12 47.9 63.6 4 13 0.0014 1.3 9.8 1.0 35 78 281 324 271 330 0.87 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF135-204 - 616 1.7e-12 47.9 63.6 5 13 6.7e-05 0.064 14.0 0.7 29 76 303 350 296 354 0.87 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF135-204 - 616 1.7e-12 47.9 63.6 6 13 0.0026 2.5 8.9 1.0 32 78 334 380 327 386 0.87 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF135-204 - 616 1.7e-12 47.9 63.6 7 13 0.0015 1.4 9.7 0.8 31 78 361 408 352 410 0.83 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF135-204 - 616 1.7e-12 47.9 63.6 8 13 0.00011 0.11 13.3 1.8 32 78 390 436 382 439 0.86 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF135-204 - 616 1.7e-12 47.9 63.6 9 13 0.00021 0.2 12.4 1.5 32 76 446 490 439 494 0.87 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF135-204 - 616 1.7e-12 47.9 63.6 10 13 0.0044 4.2 8.2 1.4 32 78 474 520 469 524 0.84 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF135-204 - 616 1.7e-12 47.9 63.6 11 13 0.00078 0.74 10.6 1.6 29 78 499 548 493 554 0.85 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF135-204 - 616 1.7e-12 47.9 63.6 12 13 2.6e-05 0.025 15.3 1.9 27 78 525 576 522 582 0.87 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF135-204 - 616 1.7e-12 47.9 63.6 13 13 0.001 0.99 10.2 1.6 35 78 561 604 552 610 0.86 zinc-ribbon family zf-trcl PF13451.6 48 ZNF135-204 - 616 8.5e-08 32.0 58.4 1 13 0.027 26 4.8 2.1 2 19 169 186 168 212 0.73 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF135-204 - 616 8.5e-08 32.0 58.4 2 13 0.023 21 5.1 0.1 3 14 226 237 224 241 0.89 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF135-204 - 616 8.5e-08 32.0 58.4 3 13 0.02 19 5.3 3.7 3 43 254 293 252 296 0.68 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF135-204 - 616 8.5e-08 32.0 58.4 4 13 0.098 92 3.0 0.0 3 15 310 322 308 328 0.84 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF135-204 - 616 8.5e-08 32.0 58.4 5 13 0.039 37 4.3 0.1 3 15 338 350 336 352 0.89 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF135-204 - 616 8.5e-08 32.0 58.4 6 13 0.37 3.5e+02 1.2 0.1 3 14 366 377 364 380 0.87 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF135-204 - 616 8.5e-08 32.0 58.4 7 13 0.078 73 3.4 2.2 3 43 394 433 393 437 0.60 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF135-204 - 616 8.5e-08 32.0 58.4 8 13 0.015 14 5.6 0.1 3 16 450 463 448 470 0.85 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF135-204 - 616 8.5e-08 32.0 58.4 9 13 0.11 1.1e+02 2.8 0.0 3 14 478 489 476 493 0.88 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF135-204 - 616 8.5e-08 32.0 58.4 10 13 0.12 1.1e+02 2.8 0.1 3 14 506 517 504 520 0.87 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF135-204 - 616 8.5e-08 32.0 58.4 11 13 0.063 60 3.7 0.0 2 16 533 547 532 552 0.83 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF135-204 - 616 8.5e-08 32.0 58.4 12 13 0.016 15 5.5 0.1 3 14 562 573 560 576 0.90 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF135-204 - 616 8.5e-08 32.0 58.4 13 13 0.0013 1.2 9.1 0.1 3 17 590 604 588 609 0.88 Probable zinc-ribbon domain # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF135-204.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF135-204.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF135-204.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF135-204.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF135-204.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:00:00 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZNF135-205 - 670 9.2e-134 430.5 126.6 1 17 0.00016 0.15 12.6 4.4 11 26 222 237 218 237 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF135-205 - 670 9.2e-134 430.5 126.6 2 17 9.2e-09 8.7e-06 25.9 2.1 2 26 241 265 240 265 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF135-205 - 670 9.2e-134 430.5 126.6 3 17 1.6e-11 1.5e-08 34.7 0.7 1 25 268 292 268 293 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF135-205 - 670 9.2e-134 430.5 126.6 4 17 1.3e-11 1.2e-08 34.9 0.5 3 25 298 320 297 320 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF135-205 - 670 9.2e-134 430.5 126.6 5 17 7e-12 6.6e-09 35.8 0.9 2 25 325 348 324 349 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF135-205 - 670 9.2e-134 430.5 126.6 6 17 6.5e-12 6.1e-09 35.9 1.4 1 26 352 377 352 377 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF135-205 - 670 9.2e-134 430.5 126.6 7 17 2.6e-12 2.5e-09 37.1 1.5 1 25 380 404 380 405 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF135-205 - 670 9.2e-134 430.5 126.6 8 17 4.7e-11 4.4e-08 33.2 0.2 3 25 410 432 409 433 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF135-205 - 670 9.2e-134 430.5 126.6 9 17 3.3e-09 3.1e-06 27.4 1.6 2 26 437 461 437 461 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF135-205 - 670 9.2e-134 430.5 126.6 10 17 2e-12 1.9e-09 37.5 0.4 1 25 464 488 464 489 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF135-205 - 670 9.2e-134 430.5 126.6 11 17 9.9e-12 9.3e-09 35.3 1.8 1 26 492 517 492 517 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF135-205 - 670 9.2e-134 430.5 126.6 12 17 1.9e-11 1.8e-08 34.4 0.3 1 25 520 544 520 545 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF135-205 - 670 9.2e-134 430.5 126.6 13 17 2.5e-10 2.4e-07 30.9 0.1 3 25 550 572 549 573 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF135-205 - 670 9.2e-134 430.5 126.6 14 17 3e-08 2.9e-05 24.3 1.4 4 26 579 601 577 601 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF135-205 - 670 9.2e-134 430.5 126.6 15 17 2.5e-11 2.3e-08 34.1 1.5 1 25 604 628 604 629 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF135-205 - 670 9.2e-134 430.5 126.6 16 17 9.3e-11 8.7e-08 32.3 2.4 1 26 632 657 632 657 0.97 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF135-205 - 670 9.2e-134 430.5 126.6 17 17 0.034 32 5.2 0.5 1 11 660 670 660 670 0.92 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZNF135-205 - 670 1.5e-95 308.6 128.3 1 16 3.2e-08 3e-05 24.2 2.8 1 23 226 248 226 248 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF135-205 - 670 1.5e-95 308.6 128.3 2 16 6.8e-08 6.4e-05 23.2 1.7 1 23 254 276 254 276 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF135-205 - 670 1.5e-95 308.6 128.3 3 16 5.1e-07 0.00048 20.4 0.5 1 23 282 304 282 304 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF135-205 - 670 1.5e-95 308.6 128.3 4 16 2.7e-07 0.00025 21.3 2.2 1 23 310 332 310 332 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF135-205 - 670 1.5e-95 308.6 128.3 5 16 2.3e-08 2.2e-05 24.6 1.0 1 23 338 360 338 360 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF135-205 - 670 1.5e-95 308.6 128.3 6 16 8.5e-10 8e-07 29.2 1.5 1 23 366 388 366 388 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF135-205 - 670 1.5e-95 308.6 128.3 7 16 1.5e-07 0.00014 22.1 0.7 1 23 394 416 394 416 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF135-205 - 670 1.5e-95 308.6 128.3 8 16 3.1e-08 3e-05 24.2 0.2 1 23 422 444 422 444 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF135-205 - 670 1.5e-95 308.6 128.3 9 16 2.1e-07 0.0002 21.6 2.2 3 23 452 472 450 472 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF135-205 - 670 1.5e-95 308.6 128.3 10 16 2.3e-08 2.1e-05 24.7 2.2 1 23 478 500 478 500 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF135-205 - 670 1.5e-95 308.6 128.3 11 16 5.1e-10 4.8e-07 29.9 1.8 1 23 506 528 506 528 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF135-205 - 670 1.5e-95 308.6 128.3 12 16 8.4e-07 0.0008 19.7 0.1 1 23 534 556 534 556 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF135-205 - 670 1.5e-95 308.6 128.3 13 16 1.3e-08 1.2e-05 25.5 0.2 1 23 562 584 562 584 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF135-205 - 670 1.5e-95 308.6 128.3 14 16 1.3e-07 0.00012 22.3 2.2 3 23 592 612 590 612 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF135-205 - 670 1.5e-95 308.6 128.3 15 16 6.2e-09 5.9e-06 26.5 5.3 1 23 618 640 618 640 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF135-205 - 670 1.5e-95 308.6 128.3 16 16 2.1e-09 2e-06 27.9 2.8 1 23 646 668 646 668 0.98 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZNF135-205 - 670 6.3e-50 163.5 121.7 1 16 0.0001 0.099 13.5 2.5 1 23 226 248 226 249 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF135-205 - 670 6.3e-50 163.5 121.7 2 16 0.00017 0.16 12.9 1.4 1 23 254 276 254 277 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF135-205 - 670 6.3e-50 163.5 121.7 3 16 1.3e-06 0.0012 19.4 0.3 1 23 282 304 282 305 0.97 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF135-205 - 670 6.3e-50 163.5 121.7 4 16 5.7e-06 0.0053 17.5 2.1 1 23 310 332 310 333 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF135-205 - 670 6.3e-50 163.5 121.7 5 16 7.1e-05 0.067 14.1 0.9 1 23 338 360 338 361 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF135-205 - 670 6.3e-50 163.5 121.7 6 16 6.1e-05 0.058 14.3 1.4 1 23 366 388 366 389 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF135-205 - 670 6.3e-50 163.5 121.7 7 16 1.6e-05 0.015 16.1 0.5 1 23 394 416 394 417 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF135-205 - 670 6.3e-50 163.5 121.7 8 16 0.00013 0.12 13.3 0.2 1 23 422 444 422 445 0.81 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF135-205 - 670 6.3e-50 163.5 121.7 9 16 1.7e-05 0.016 16.0 1.8 2 23 451 472 450 473 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF135-205 - 670 6.3e-50 163.5 121.7 10 16 2e-05 0.019 15.8 1.7 1 23 478 500 478 501 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF135-205 - 670 6.3e-50 163.5 121.7 11 16 8e-05 0.075 13.9 1.4 1 23 506 528 506 529 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF135-205 - 670 6.3e-50 163.5 121.7 12 16 2.9e-05 0.027 15.3 0.1 1 23 534 556 534 557 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF135-205 - 670 6.3e-50 163.5 121.7 13 16 4.4e-05 0.041 14.7 0.2 1 23 562 584 562 585 0.88 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF135-205 - 670 6.3e-50 163.5 121.7 14 16 1.8e-05 0.017 15.9 1.9 2 23 591 612 590 613 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF135-205 - 670 6.3e-50 163.5 121.7 15 16 6.6e-05 0.062 14.2 3.5 1 23 618 640 618 641 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF135-205 - 670 6.3e-50 163.5 121.7 16 16 5.3e-05 0.05 14.5 1.9 1 23 646 668 646 669 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF135-205 - 670 9.6e-24 82.9 127.6 1 16 1.7e-05 0.016 15.2 3.9 2 24 226 248 226 251 0.95 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF135-205 - 670 9.6e-24 82.9 127.6 2 16 0.00023 0.21 11.6 1.6 2 24 254 276 254 279 0.91 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF135-205 - 670 9.6e-24 82.9 127.6 3 16 4.4e-05 0.041 13.9 0.2 2 24 282 304 282 307 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF135-205 - 670 9.6e-24 82.9 127.6 4 16 0.00024 0.23 11.5 1.4 2 12 310 320 310 320 0.95 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF135-205 - 670 9.6e-24 82.9 127.6 5 16 0.00045 0.42 10.7 0.4 2 12 338 348 338 360 0.85 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF135-205 - 670 9.6e-24 82.9 127.6 6 16 0.016 15 5.7 2.4 2 24 366 388 366 391 0.89 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF135-205 - 670 9.6e-24 82.9 127.6 7 16 8.1e-06 0.0077 16.2 0.5 2 24 394 416 394 419 0.95 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF135-205 - 670 9.6e-24 82.9 127.6 8 16 0.00082 0.77 9.8 0.4 2 24 422 444 422 447 0.92 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF135-205 - 670 9.6e-24 82.9 127.6 9 16 0.0015 1.5 9.0 3.1 2 24 450 472 450 475 0.90 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF135-205 - 670 9.6e-24 82.9 127.6 10 16 0.00083 0.78 9.8 1.6 2 20 478 496 478 501 0.79 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF135-205 - 670 9.6e-24 82.9 127.6 11 16 0.0055 5.2 7.2 1.7 2 24 506 528 506 531 0.90 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF135-205 - 670 9.6e-24 82.9 127.6 12 16 0.0015 1.4 9.0 0.1 2 21 534 553 534 558 0.82 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF135-205 - 670 9.6e-24 82.9 127.6 13 16 0.0041 3.9 7.6 0.3 2 12 562 572 562 587 0.78 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF135-205 - 670 9.6e-24 82.9 127.6 14 16 0.0013 1.2 9.2 3.4 2 24 590 612 590 615 0.90 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF135-205 - 670 9.6e-24 82.9 127.6 15 16 0.002 1.9 8.6 3.0 2 24 618 640 618 643 0.91 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF135-205 - 670 9.6e-24 82.9 127.6 16 16 0.063 59 3.8 2.8 2 24 646 668 646 670 0.93 C2H2-type zinc finger KRAB PF01352.27 42 ZNF135-205 - 670 9.6e-23 79.6 0.8 1 2 3.9e-25 3.6e-22 77.7 0.3 2 42 14 54 13 54 0.98 KRAB box KRAB PF01352.27 42 ZNF135-205 - 670 9.6e-23 79.6 0.8 2 2 1.8 1.7e+03 -1.2 0.0 9 25 159 175 157 177 0.87 KRAB box Zn-ribbon_8 PF09723.10 40 ZNF135-205 - 670 8.6e-20 70.6 86.9 1 15 0.0089 8.4 6.6 5.6 6 32 226 259 225 265 0.82 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF135-205 - 670 8.6e-20 70.6 86.9 2 15 0.0022 2.1 8.5 4.2 6 35 254 290 253 295 0.84 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF135-205 - 670 8.6e-20 70.6 86.9 3 15 0.00053 0.5 10.5 0.1 6 21 282 297 281 304 0.83 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF135-205 - 670 8.6e-20 70.6 86.9 4 15 0.0002 0.18 11.9 6.4 6 38 310 349 309 351 0.82 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF135-205 - 670 8.6e-20 70.6 86.9 5 15 0.011 10 6.4 0.5 6 16 338 348 337 361 0.83 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF135-205 - 670 8.6e-20 70.6 86.9 6 15 2.6e-05 0.025 14.7 3.7 6 37 366 404 365 407 0.91 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF135-205 - 670 8.6e-20 70.6 86.9 7 15 0.00026 0.25 11.5 5.3 6 35 394 430 393 433 0.86 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF135-205 - 670 8.6e-20 70.6 86.9 8 15 0.00023 0.22 11.7 4.1 6 35 422 458 421 461 0.92 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF135-205 - 670 8.6e-20 70.6 86.9 9 15 0.00056 0.53 10.5 4.6 6 37 450 488 449 489 0.76 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF135-205 - 670 8.6e-20 70.6 86.9 10 15 0.00022 0.21 11.7 4.9 6 34 478 513 476 517 0.92 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF135-205 - 670 8.6e-20 70.6 86.9 11 15 1.1e-05 0.01 15.9 3.4 6 36 506 543 505 547 0.91 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF135-205 - 670 8.6e-20 70.6 86.9 12 15 6.2e-05 0.058 13.5 3.1 6 33 534 568 533 569 0.90 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF135-205 - 670 8.6e-20 70.6 86.9 13 15 5.9e-06 0.0056 16.8 1.9 6 34 562 597 560 602 0.93 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF135-205 - 670 8.6e-20 70.6 86.9 14 15 0.0002 0.19 11.9 4.4 6 35 618 654 617 657 0.88 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF135-205 - 670 8.6e-20 70.6 86.9 15 15 0.0056 5.3 7.3 0.2 6 20 646 660 645 667 0.80 Zinc ribbon domain zf-C2H2_11 PF16622.5 29 ZNF135-205 - 670 1e-15 57.1 92.8 1 16 0.004 3.8 7.4 0.2 5 23 226 244 223 247 0.84 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF135-205 - 670 1e-15 57.1 92.8 2 16 1.9 1.8e+03 -1.2 0.9 7 26 256 275 254 276 0.84 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF135-205 - 670 1e-15 57.1 92.8 3 16 0.0072 6.7 6.6 0.1 5 15 282 292 279 302 0.79 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF135-205 - 670 1e-15 57.1 92.8 4 16 0.02 19 5.2 0.6 6 23 311 328 308 331 0.90 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF135-205 - 670 1e-15 57.1 92.8 5 16 0.0035 3.3 7.6 0.6 6 26 339 359 336 360 0.94 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF135-205 - 670 1e-15 57.1 92.8 6 16 8.1e-06 0.0077 16.0 0.6 5 26 366 387 363 388 0.94 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF135-205 - 670 1e-15 57.1 92.8 7 16 0.038 36 4.3 0.1 6 23 395 412 392 415 0.82 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF135-205 - 670 1e-15 57.1 92.8 8 16 0.0033 3.1 7.6 0.1 6 26 423 443 420 444 0.93 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF135-205 - 670 1e-15 57.1 92.8 9 16 0.00068 0.65 9.8 0.7 7 23 452 468 449 471 0.93 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF135-205 - 670 1e-15 57.1 92.8 10 16 0.13 1.2e+02 2.5 0.9 6 26 479 499 476 500 0.89 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF135-205 - 670 1e-15 57.1 92.8 11 16 0.00014 0.14 12.0 0.4 6 26 507 527 504 528 0.93 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF135-205 - 670 1e-15 57.1 92.8 12 16 0.011 10 5.9 0.1 6 26 535 555 532 556 0.82 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF135-205 - 670 1e-15 57.1 92.8 13 16 0.0059 5.5 6.8 0.3 6 26 563 583 560 586 0.82 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF135-205 - 670 1e-15 57.1 92.8 14 16 0.00087 0.82 9.5 1.0 7 23 592 608 589 611 0.93 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF135-205 - 670 1e-15 57.1 92.8 15 16 0.046 43 4.0 1.3 6 26 619 639 616 640 0.93 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF135-205 - 670 1e-15 57.1 92.8 16 16 0.00013 0.12 12.2 0.5 7 24 648 665 645 667 0.92 zinc-finger C2H2-type XPA_N PF01286.18 32 ZNF135-205 - 670 6.2e-14 51.7 69.7 1 16 0.0014 1.3 9.1 0.1 3 14 227 238 225 244 0.88 XPA protein N-terminal XPA_N PF01286.18 32 ZNF135-205 - 670 6.2e-14 51.7 69.7 2 16 0.11 1e+02 3.1 0.1 3 14 255 266 253 271 0.89 XPA protein N-terminal XPA_N PF01286.18 32 ZNF135-205 - 670 6.2e-14 51.7 69.7 3 16 0.23 2.1e+02 2.0 0.1 3 12 283 292 281 293 0.87 XPA protein N-terminal XPA_N PF01286.18 32 ZNF135-205 - 670 6.2e-14 51.7 69.7 4 16 0.045 43 4.3 0.4 3 11 311 319 309 321 0.89 XPA protein N-terminal XPA_N PF01286.18 32 ZNF135-205 - 670 6.2e-14 51.7 69.7 5 16 0.0026 2.4 8.3 0.1 3 15 339 351 337 355 0.86 XPA protein N-terminal XPA_N PF01286.18 32 ZNF135-205 - 670 6.2e-14 51.7 69.7 6 16 0.019 18 5.5 0.2 3 14 367 378 365 383 0.89 XPA protein N-terminal XPA_N PF01286.18 32 ZNF135-205 - 670 6.2e-14 51.7 69.7 7 16 0.017 16 5.6 0.2 3 12 395 404 393 405 0.88 XPA protein N-terminal XPA_N PF01286.18 32 ZNF135-205 - 670 6.2e-14 51.7 69.7 8 16 0.00021 0.2 11.7 0.1 3 18 423 438 421 441 0.91 XPA protein N-terminal XPA_N PF01286.18 32 ZNF135-205 - 670 6.2e-14 51.7 69.7 9 16 0.011 11 6.2 0.3 4 14 452 462 450 468 0.89 XPA protein N-terminal XPA_N PF01286.18 32 ZNF135-205 - 670 6.2e-14 51.7 69.7 10 16 0.013 12 6.1 0.1 3 15 479 491 477 496 0.86 XPA protein N-terminal XPA_N PF01286.18 32 ZNF135-205 - 670 6.2e-14 51.7 69.7 11 16 0.016 15 5.7 0.2 3 14 507 518 505 523 0.89 XPA protein N-terminal XPA_N PF01286.18 32 ZNF135-205 - 670 6.2e-14 51.7 69.7 12 16 0.27 2.5e+02 1.8 0.1 3 12 535 544 533 545 0.87 XPA protein N-terminal XPA_N PF01286.18 32 ZNF135-205 - 670 6.2e-14 51.7 69.7 13 16 0.0062 5.9 7.0 0.1 3 17 563 577 561 579 0.91 XPA protein N-terminal XPA_N PF01286.18 32 ZNF135-205 - 670 6.2e-14 51.7 69.7 14 16 0.019 18 5.5 0.4 4 14 592 602 590 608 0.89 XPA protein N-terminal XPA_N PF01286.18 32 ZNF135-205 - 670 6.2e-14 51.7 69.7 15 16 0.01 9.8 6.3 0.1 3 15 619 631 617 636 0.86 XPA protein N-terminal XPA_N PF01286.18 32 ZNF135-205 - 670 6.2e-14 51.7 69.7 16 16 0.018 17 5.6 0.1 4 14 648 658 645 663 0.89 XPA protein N-terminal zf-C2H2_jaz PF12171.8 27 ZNF135-205 - 670 6.6e-13 48.6 76.0 1 16 0.001 0.95 9.8 0.9 2 20 226 244 225 248 0.90 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF135-205 - 670 6.6e-13 48.6 76.0 2 16 0.0006 0.57 10.5 0.1 2 22 254 274 253 274 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF135-205 - 670 6.6e-13 48.6 76.0 3 16 0.069 65 4.0 0.1 2 23 282 303 281 304 0.81 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF135-205 - 670 6.6e-13 48.6 76.0 4 16 0.0024 2.2 8.7 1.0 2 24 310 332 309 332 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF135-205 - 670 6.6e-13 48.6 76.0 5 16 0.025 24 5.4 0.1 2 22 338 358 337 358 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF135-205 - 670 6.6e-13 48.6 76.0 6 16 0.0072 6.8 7.1 0.1 4 22 368 386 365 386 0.91 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF135-205 - 670 6.6e-13 48.6 76.0 7 16 0.3 2.8e+02 1.9 0.1 2 12 394 404 393 416 0.72 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF135-205 - 670 6.6e-13 48.6 76.0 8 16 0.092 87 3.6 0.0 2 21 422 441 421 442 0.89 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF135-205 - 670 6.6e-13 48.6 76.0 9 16 0.00033 0.31 11.4 1.3 4 24 452 472 450 472 0.95 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF135-205 - 670 6.6e-13 48.6 76.0 10 16 0.11 1.1e+02 3.3 0.2 2 22 478 498 477 498 0.91 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF135-205 - 670 6.6e-13 48.6 76.0 11 16 0.0044 4.1 7.8 0.2 2 22 506 526 505 526 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF135-205 - 670 6.6e-13 48.6 76.0 12 16 7.5 7e+03 -2.5 0.1 2 11 534 543 533 544 0.84 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF135-205 - 670 6.6e-13 48.6 76.0 13 16 0.39 3.7e+02 1.6 0.0 2 22 562 582 561 582 0.90 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF135-205 - 670 6.6e-13 48.6 76.0 14 16 0.00097 0.91 9.9 1.5 4 24 592 612 590 612 0.95 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF135-205 - 670 6.6e-13 48.6 76.0 15 16 0.067 63 4.0 0.3 2 21 618 637 617 638 0.90 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF135-205 - 670 6.6e-13 48.6 76.0 16 16 0.013 13 6.2 0.3 2 24 646 668 645 668 0.91 Zinc-finger double-stranded RNA-binding zf_UBZ PF18439.1 32 ZNF135-205 - 670 1.9e-12 46.5 80.6 1 16 0.00018 0.17 11.5 0.8 3 20 226 244 224 245 0.93 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF135-205 - 670 1.9e-12 46.5 80.6 2 16 2.8 2.7e+03 -1.9 0.2 3 13 254 264 253 273 0.69 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF135-205 - 670 1.9e-12 46.5 80.6 3 16 0.056 53 3.5 0.1 3 13 282 292 280 301 0.84 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF135-205 - 670 1.9e-12 46.5 80.6 4 16 0.0013 1.2 8.8 0.3 3 20 310 328 308 329 0.83 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF135-205 - 670 1.9e-12 46.5 80.6 5 16 0.0046 4.3 7.0 0.3 3 20 338 356 336 357 0.83 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF135-205 - 670 1.9e-12 46.5 80.6 6 16 0.0021 2 8.1 0.2 3 21 366 385 364 385 0.87 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF135-205 - 670 1.9e-12 46.5 80.6 7 16 0.084 80 3.0 0.2 3 12 394 403 392 413 0.84 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF135-205 - 670 1.9e-12 46.5 80.6 8 16 0.00065 0.61 9.7 0.1 3 20 422 440 420 441 0.92 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF135-205 - 670 1.9e-12 46.5 80.6 9 16 0.0031 2.9 7.6 0.3 3 21 450 469 448 469 0.89 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF135-205 - 670 1.9e-12 46.5 80.6 10 16 0.0043 4.1 7.1 0.5 3 21 478 497 476 497 0.86 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF135-205 - 670 1.9e-12 46.5 80.6 11 16 0.0054 5.1 6.8 0.3 3 21 506 525 504 525 0.87 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF135-205 - 670 1.9e-12 46.5 80.6 12 16 0.13 1.2e+02 2.4 0.1 3 14 534 545 532 553 0.82 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF135-205 - 670 1.9e-12 46.5 80.6 13 16 0.0038 3.6 7.3 0.1 3 21 562 581 560 581 0.92 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF135-205 - 670 1.9e-12 46.5 80.6 14 16 0.0026 2.5 7.8 0.3 3 21 590 609 588 609 0.89 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF135-205 - 670 1.9e-12 46.5 80.6 15 16 0.022 20 4.9 0.7 3 20 618 636 616 637 0.82 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF135-205 - 670 1.9e-12 46.5 80.6 16 16 0.018 17 5.1 0.1 3 21 646 665 644 665 0.85 Ubiquitin-Binding Zinc Finger zinc_ribbon_15 PF17032.5 86 ZNF135-205 - 670 3.7e-12 46.8 63.4 1 13 0.042 39 5.1 7.3 36 76 224 264 214 294 0.74 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF135-205 - 670 3.7e-12 46.8 63.4 2 13 0.00046 0.44 11.3 1.5 31 81 275 325 270 328 0.86 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF135-205 - 670 3.7e-12 46.8 63.4 3 13 0.00072 0.68 10.7 1.5 31 78 303 350 296 356 0.84 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF135-205 - 670 3.7e-12 46.8 63.4 4 13 0.0016 1.5 9.6 1.0 35 78 335 378 325 384 0.87 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF135-205 - 670 3.7e-12 46.8 63.4 5 13 0.00057 0.54 11.0 3.8 29 76 357 404 340 408 0.86 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF135-205 - 670 3.7e-12 46.8 63.4 6 13 0.003 2.8 8.7 0.9 32 77 388 433 381 437 0.86 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF135-205 - 670 3.7e-12 46.8 63.4 7 13 0.0013 1.3 9.9 0.6 31 78 415 462 406 465 0.83 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF135-205 - 670 3.7e-12 46.8 63.4 8 13 0.00013 0.12 13.1 1.9 32 78 444 490 435 496 0.87 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF135-205 - 670 3.7e-12 46.8 63.4 9 13 0.00024 0.23 12.3 1.5 32 76 500 544 493 548 0.87 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF135-205 - 670 3.7e-12 46.8 63.4 10 13 0.00079 0.75 10.6 1.3 29 78 553 602 548 606 0.85 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF135-205 - 670 3.7e-12 46.8 63.4 11 13 2.5e-05 0.024 15.4 1.9 26 78 578 630 574 636 0.87 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF135-205 - 670 3.7e-12 46.8 63.4 12 13 0.001 0.97 10.2 1.3 35 78 615 658 607 661 0.86 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF135-205 - 670 3.7e-12 46.8 63.4 13 13 0.23 2.1e+02 2.7 0.1 32 56 640 664 633 669 0.72 zinc-ribbon family zf-trcl PF13451.6 48 ZNF135-205 - 670 3.3e-07 30.1 58.4 1 13 0.028 27 4.8 2.0 2 19 223 240 222 266 0.73 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF135-205 - 670 3.3e-07 30.1 58.4 2 13 0.025 23 4.9 0.1 3 14 280 291 278 295 0.89 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF135-205 - 670 3.3e-07 30.1 58.4 3 13 0.022 21 5.1 3.7 3 42 308 346 306 350 0.68 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF135-205 - 670 3.3e-07 30.1 58.4 4 13 0.11 1e+02 2.9 0.0 3 15 364 376 362 382 0.84 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF135-205 - 670 3.3e-07 30.1 58.4 5 13 0.043 41 4.2 0.1 3 15 392 404 390 406 0.89 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF135-205 - 670 3.3e-07 30.1 58.4 6 13 0.41 3.8e+02 1.1 0.1 3 14 420 431 418 434 0.87 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF135-205 - 670 3.3e-07 30.1 58.4 7 13 0.096 90 3.1 2.4 3 43 448 487 447 491 0.60 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF135-205 - 670 3.3e-07 30.1 58.4 8 13 0.017 16 5.5 0.1 3 16 504 517 502 524 0.85 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF135-205 - 670 3.3e-07 30.1 58.4 9 13 0.13 1.2e+02 2.7 0.0 3 14 532 543 530 547 0.88 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF135-205 - 670 3.3e-07 30.1 58.4 10 13 0.13 1.2e+02 2.6 0.1 3 14 560 571 558 574 0.87 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF135-205 - 670 3.3e-07 30.1 58.4 11 13 0.069 65 3.5 0.0 2 16 587 601 586 606 0.83 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF135-205 - 670 3.3e-07 30.1 58.4 12 13 0.018 17 5.4 0.1 3 14 616 627 614 630 0.90 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF135-205 - 670 3.3e-07 30.1 58.4 13 13 0.0014 1.4 8.9 0.1 3 17 644 658 642 663 0.88 Probable zinc-ribbon domain # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF135-205.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF135-205.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF135-205.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF135-205.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF135-205.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:00:01 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF135-206.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF135-206.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF135-206.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF135-206.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF135-206.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:00:01 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZNF136-201 - 540 2e-98 318.8 126.9 1 15 0.0039 2.8 8.5 0.2 1 15 116 132 116 147 0.72 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF136-201 - 540 2e-98 318.8 126.9 2 15 5.1e-08 3.7e-05 24.0 0.7 2 24 155 177 154 179 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF136-201 - 540 2e-98 318.8 126.9 3 15 4.3e-09 3.1e-06 27.3 0.7 3 25 184 206 183 207 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF136-201 - 540 2e-98 318.8 126.9 4 15 1.3e-10 9.6e-08 32.1 3.5 2 25 211 234 210 235 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF136-201 - 540 2e-98 318.8 126.9 5 15 4.5e-09 3.2e-06 27.3 1.7 2 22 239 259 238 263 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF136-201 - 540 2e-98 318.8 126.9 6 15 3.5e-10 2.5e-07 30.8 2.8 2 25 267 290 266 291 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF136-201 - 540 2e-98 318.8 126.9 7 15 1.9e-11 1.4e-08 34.8 1.1 2 25 295 318 294 319 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF136-201 - 540 2e-98 318.8 126.9 8 15 7.5e-11 5.4e-08 32.9 0.4 1 25 322 346 322 347 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF136-201 - 540 2e-98 318.8 126.9 9 15 1.8e-09 1.3e-06 28.6 2.5 5 25 354 374 351 375 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF136-201 - 540 2e-98 318.8 126.9 10 15 1.1e-09 7.7e-07 29.3 2.2 2 22 379 399 378 403 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF136-201 - 540 2e-98 318.8 126.9 11 15 7.1e-10 5.1e-07 29.8 2.6 4 26 409 431 407 431 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF136-201 - 540 2e-98 318.8 126.9 12 15 5e-11 3.6e-08 33.5 0.9 5 25 438 458 434 459 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF136-201 - 540 2e-98 318.8 126.9 13 15 7.5e-09 5.4e-06 26.6 1.3 2 25 463 486 462 487 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF136-201 - 540 2e-98 318.8 126.9 14 15 8.9e-09 6.4e-06 26.4 5.4 2 25 491 514 490 515 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF136-201 - 540 2e-98 318.8 126.9 15 15 0.032 23 5.6 0.1 2 18 519 536 518 536 0.88 Zinc-finger double domain zf-C2H2_4 PF13894.6 24 ZNF136-201 - 540 2.5e-49 161.6 122.9 1 15 0.65 4.6e+02 2.1 0.0 13 23 114 124 108 125 0.80 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF136-201 - 540 2.5e-49 161.6 122.9 2 15 0.22 1.6e+02 3.6 1.3 6 23 145 162 143 163 0.86 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF136-201 - 540 2.5e-49 161.6 122.9 3 15 3.4e-06 0.0024 18.6 0.6 3 23 170 190 168 191 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF136-201 - 540 2.5e-49 161.6 122.9 4 15 5.4e-06 0.0039 17.9 1.3 1 23 196 218 196 219 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF136-201 - 540 2.5e-49 161.6 122.9 5 15 1.7e-06 0.0012 19.5 1.4 1 23 224 246 224 247 0.97 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF136-201 - 540 2.5e-49 161.6 122.9 6 15 3.4e-06 0.0025 18.5 2.1 1 23 252 274 252 275 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF136-201 - 540 2.5e-49 161.6 122.9 7 15 1.7e-06 0.0012 19.5 2.6 1 23 280 302 280 303 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF136-201 - 540 2.5e-49 161.6 122.9 8 15 4.4e-05 0.032 15.1 0.4 1 23 308 330 308 331 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF136-201 - 540 2.5e-49 161.6 122.9 9 15 5.7e-06 0.0041 17.8 0.8 1 23 336 358 336 359 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF136-201 - 540 2.5e-49 161.6 122.9 10 15 8.6e-07 0.00062 20.4 1.0 1 23 364 386 364 387 0.97 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF136-201 - 540 2.5e-49 161.6 122.9 11 15 2.3e-06 0.0017 19.0 2.1 1 23 392 414 392 415 0.97 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF136-201 - 540 2.5e-49 161.6 122.9 12 15 3.6e-06 0.0026 18.5 1.2 1 23 420 442 420 443 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF136-201 - 540 2.5e-49 161.6 122.9 13 15 1.7e-05 0.012 16.4 0.7 1 23 448 470 448 471 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF136-201 - 540 2.5e-49 161.6 122.9 14 15 1.8e-05 0.013 16.3 1.9 1 23 476 498 476 499 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF136-201 - 540 2.5e-49 161.6 122.9 15 15 4.9e-06 0.0035 18.0 3.9 1 23 504 526 504 527 0.96 C2H2-type zinc finger zf-C2H2 PF00096.26 23 ZNF136-201 - 540 1.1e-47 157.9 127.4 1 16 3.2 2.3e+03 -0.6 0.1 15 21 62 68 59 69 0.84 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF136-201 - 540 1.1e-47 157.9 127.4 2 16 0.15 1e+02 3.6 0.1 13 23 114 124 109 124 0.92 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF136-201 - 540 1.1e-47 157.9 127.4 3 16 0.018 13 6.5 2.0 5 23 144 162 143 162 0.92 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF136-201 - 540 1.1e-47 157.9 127.4 4 16 2e-05 0.014 15.8 1.2 1 23 168 190 168 190 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF136-201 - 540 1.1e-47 157.9 127.4 5 16 1.1e-06 0.00081 19.7 1.7 1 23 196 218 196 218 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF136-201 - 540 1.1e-47 157.9 127.4 6 16 0.00012 0.089 13.3 1.6 1 23 224 246 224 246 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF136-201 - 540 1.1e-47 157.9 127.4 7 16 4.9e-07 0.00035 20.9 2.0 1 23 252 274 252 274 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF136-201 - 540 1.1e-47 157.9 127.4 8 16 6e-05 0.043 14.3 2.8 1 23 280 302 280 302 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF136-201 - 540 1.1e-47 157.9 127.4 9 16 1.5e-06 0.0011 19.3 0.3 1 23 308 330 308 330 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF136-201 - 540 1.1e-47 157.9 127.4 10 16 1.1e-07 8e-05 22.9 0.7 1 23 336 358 336 358 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF136-201 - 540 1.1e-47 157.9 127.4 11 16 0.00027 0.19 12.2 1.0 1 23 364 386 364 386 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF136-201 - 540 1.1e-47 157.9 127.4 12 16 5.6e-06 0.004 17.5 2.4 1 23 392 414 392 414 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF136-201 - 540 1.1e-47 157.9 127.4 13 16 1.1e-06 0.00079 19.8 1.4 1 23 420 442 420 442 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF136-201 - 540 1.1e-47 157.9 127.4 14 16 8e-06 0.0057 17.0 0.9 1 23 448 470 448 470 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF136-201 - 540 1.1e-47 157.9 127.4 15 16 3.5e-07 0.00025 21.3 2.2 1 23 476 498 476 498 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF136-201 - 540 1.1e-47 157.9 127.4 16 16 0.00022 0.16 12.5 5.3 1 23 504 526 504 526 0.98 Zinc finger, C2H2 type zf-C2H2_6 PF13912.6 27 ZNF136-201 - 540 4.8e-26 90.2 95.5 1 13 0.00018 0.13 12.3 0.3 2 24 168 190 167 192 0.82 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF136-201 - 540 4.8e-26 90.2 95.5 2 13 0.00088 0.63 10.1 0.8 2 24 196 218 196 221 0.75 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF136-201 - 540 4.8e-26 90.2 95.5 3 13 3.1e-05 0.022 14.7 1.1 2 24 224 246 224 248 0.95 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF136-201 - 540 4.8e-26 90.2 95.5 4 13 0.0004 0.29 11.2 1.3 2 14 252 264 252 271 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF136-201 - 540 4.8e-26 90.2 95.5 5 13 0.0043 3.1 7.9 1.7 2 12 280 290 280 303 0.88 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF136-201 - 540 4.8e-26 90.2 95.5 6 13 3.9e-06 0.0028 17.6 0.5 2 22 308 328 308 332 0.90 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF136-201 - 540 4.8e-26 90.2 95.5 7 13 0.00081 0.58 10.2 0.4 2 13 336 347 336 348 0.95 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF136-201 - 540 4.8e-26 90.2 95.5 8 13 1.7e-05 0.012 15.6 0.5 2 24 364 386 364 389 0.95 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF136-201 - 540 4.8e-26 90.2 95.5 9 13 0.00027 0.19 11.8 0.9 2 14 392 404 392 416 0.83 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF136-201 - 540 4.8e-26 90.2 95.5 10 13 0.00084 0.6 10.2 0.8 2 24 420 442 420 445 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF136-201 - 540 4.8e-26 90.2 95.5 11 13 4.9e-06 0.0035 17.3 1.1 2 20 448 466 448 470 0.95 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF136-201 - 540 4.8e-26 90.2 95.5 12 13 0.0024 1.7 8.7 1.9 2 24 476 498 476 501 0.86 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF136-201 - 540 4.8e-26 90.2 95.5 13 13 0.055 40 4.4 1.0 2 11 504 513 504 514 0.86 C2H2-type zinc finger KRAB PF01352.27 42 ZNF136-201 - 540 4.9e-23 80.5 0.3 1 1 1.1e-25 7.6e-23 79.9 0.3 1 42 3 44 3 44 0.98 KRAB box zf-C2H2_jaz PF12171.8 27 ZNF136-201 - 540 3.3e-15 55.9 72.1 1 14 0.16 1.1e+02 3.2 0.5 8 21 146 159 144 160 0.88 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF136-201 - 540 3.3e-15 55.9 72.1 2 14 0.0091 6.5 7.2 0.3 2 23 168 189 167 191 0.85 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF136-201 - 540 3.3e-15 55.9 72.1 3 14 0.00074 0.53 10.6 0.2 2 24 196 218 195 218 0.95 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF136-201 - 540 3.3e-15 55.9 72.1 4 14 0.16 1.2e+02 3.2 0.3 2 11 224 233 223 243 0.84 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF136-201 - 540 3.3e-15 55.9 72.1 5 14 5.4e-05 0.039 14.3 0.1 2 22 252 272 251 272 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF136-201 - 540 3.3e-15 55.9 72.1 6 14 0.14 1e+02 3.3 0.6 2 22 280 300 279 302 0.75 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF136-201 - 540 3.3e-15 55.9 72.1 7 14 0.45 3.3e+02 1.8 0.3 2 12 308 318 307 318 0.88 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF136-201 - 540 3.3e-15 55.9 72.1 8 14 1.8e-05 0.013 15.7 0.2 2 24 336 358 335 358 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF136-201 - 540 3.3e-15 55.9 72.1 9 14 2.3 1.7e+03 -0.5 0.2 2 8 364 370 363 374 0.77 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF136-201 - 540 3.3e-15 55.9 72.1 10 14 0.0036 2.6 8.4 0.1 2 24 392 414 391 414 0.89 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF136-201 - 540 3.3e-15 55.9 72.1 11 14 0.00053 0.38 11.1 0.2 2 24 420 442 419 442 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF136-201 - 540 3.3e-15 55.9 72.1 12 14 0.017 12 6.3 0.3 2 21 448 467 447 467 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF136-201 - 540 3.3e-15 55.9 72.1 13 14 0.00014 0.098 13.0 0.2 2 24 476 498 475 498 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF136-201 - 540 3.3e-15 55.9 72.1 14 14 0.1 74 3.8 1.4 4 24 506 526 503 527 0.90 Zinc-finger double-stranded RNA-binding Zn-ribbon_8 PF09723.10 40 ZNF136-201 - 540 1e-13 51.1 73.7 1 12 0.0048 3.5 7.8 0.1 6 21 168 183 167 189 0.85 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF136-201 - 540 1e-13 51.1 73.7 2 12 0.0015 1.1 9.5 7.1 6 35 196 232 195 236 0.80 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF136-201 - 540 1e-13 51.1 73.7 3 12 0.0044 3.2 8.0 1.3 6 19 224 237 223 248 0.78 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF136-201 - 540 1e-13 51.1 73.7 4 12 0.00021 0.15 12.2 3.2 6 34 252 287 251 289 0.75 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF136-201 - 540 1e-13 51.1 73.7 5 12 0.0016 1.1 9.4 6.2 6 34 280 315 278 317 0.84 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF136-201 - 540 1e-13 51.1 73.7 6 12 4e-05 0.029 14.5 2.0 6 36 308 345 307 348 0.81 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF136-201 - 540 1e-13 51.1 73.7 7 12 0.0035 2.5 8.3 6.0 6 34 336 371 335 377 0.78 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF136-201 - 540 1e-13 51.1 73.7 8 12 0.012 8.6 6.6 1.6 6 20 364 378 363 386 0.79 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF136-201 - 540 1e-13 51.1 73.7 9 12 2.2e-05 0.016 15.3 2.0 6 34 392 427 391 431 0.72 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF136-201 - 540 1e-13 51.1 73.7 10 12 0.00029 0.21 11.8 4.5 6 35 448 484 447 486 0.77 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF136-201 - 540 1e-13 51.1 73.7 11 12 0.0046 3.3 7.9 6.6 6 34 476 511 474 517 0.82 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF136-201 - 540 1e-13 51.1 73.7 12 12 0.058 42 4.4 2.0 6 16 504 514 503 535 0.77 Zinc ribbon domain Zn_ribbon_SprT PF17283.2 38 ZNF136-201 - 540 3.2e-12 46.1 53.9 1 9 0.35 2.5e+02 1.7 0.3 19 33 154 177 148 187 0.68 SprT-like zinc ribbon domain Zn_ribbon_SprT PF17283.2 38 ZNF136-201 - 540 3.2e-12 46.1 53.9 2 9 0.00056 0.4 10.6 0.4 5 23 196 214 195 219 0.95 SprT-like zinc ribbon domain Zn_ribbon_SprT PF17283.2 38 ZNF136-201 - 540 3.2e-12 46.1 53.9 3 9 1.2e-05 0.0089 15.9 1.1 5 33 224 261 223 266 0.91 SprT-like zinc ribbon domain Zn_ribbon_SprT PF17283.2 38 ZNF136-201 - 540 3.2e-12 46.1 53.9 4 9 0.014 9.8 6.2 3.2 5 34 252 289 252 292 0.90 SprT-like zinc ribbon domain Zn_ribbon_SprT PF17283.2 38 ZNF136-201 - 540 3.2e-12 46.1 53.9 5 9 0.00021 0.15 12.0 1.1 5 34 308 345 307 348 0.93 SprT-like zinc ribbon domain Zn_ribbon_SprT PF17283.2 38 ZNF136-201 - 540 3.2e-12 46.1 53.9 6 9 0.0001 0.072 13.0 0.2 5 32 364 400 363 406 0.91 SprT-like zinc ribbon domain Zn_ribbon_SprT PF17283.2 38 ZNF136-201 - 540 3.2e-12 46.1 53.9 7 9 0.0027 1.9 8.4 0.1 21 35 412 430 402 433 0.78 SprT-like zinc ribbon domain Zn_ribbon_SprT PF17283.2 38 ZNF136-201 - 540 3.2e-12 46.1 53.9 8 9 0.00028 0.2 11.6 0.9 5 35 448 486 447 489 0.93 SprT-like zinc ribbon domain Zn_ribbon_SprT PF17283.2 38 ZNF136-201 - 540 3.2e-12 46.1 53.9 9 9 0.087 62 3.6 2.7 5 24 504 523 490 535 0.75 SprT-like zinc ribbon domain DUF3268 PF11672.8 118 ZNF136-201 - 540 1.3e-08 35.2 41.5 1 9 1.7 1.2e+03 -0.2 0.0 26 37 163 174 148 184 0.77 zinc-finger-containing domain DUF3268 PF11672.8 118 ZNF136-201 - 540 1.3e-08 35.2 41.5 2 9 0.0034 2.4 8.5 1.7 2 39 195 232 194 244 0.86 zinc-finger-containing domain DUF3268 PF11672.8 118 ZNF136-201 - 540 1.3e-08 35.2 41.5 3 9 0.00073 0.52 10.6 0.7 3 43 252 292 250 302 0.86 zinc-finger-containing domain DUF3268 PF11672.8 118 ZNF136-201 - 540 1.3e-08 35.2 41.5 4 9 0.0016 1.2 9.5 1.2 2 38 279 315 278 332 0.91 zinc-finger-containing domain DUF3268 PF11672.8 118 ZNF136-201 - 540 1.3e-08 35.2 41.5 5 9 0.0014 1 9.7 0.6 2 40 307 345 306 357 0.88 zinc-finger-containing domain DUF3268 PF11672.8 118 ZNF136-201 - 540 1.3e-08 35.2 41.5 6 9 0.00031 0.22 11.8 1.3 2 40 335 373 334 383 0.87 zinc-finger-containing domain DUF3268 PF11672.8 118 ZNF136-201 - 540 1.3e-08 35.2 41.5 7 9 6.4e-05 0.046 14.0 0.4 3 40 392 430 390 441 0.86 zinc-finger-containing domain DUF3268 PF11672.8 118 ZNF136-201 - 540 1.3e-08 35.2 41.5 8 9 0.00011 0.082 13.2 1.6 2 38 419 455 418 467 0.90 zinc-finger-containing domain DUF3268 PF11672.8 118 ZNF136-201 - 540 1.3e-08 35.2 41.5 9 9 0.00075 0.53 10.6 1.2 3 41 476 514 474 527 0.85 zinc-finger-containing domain zf-C2H2_11 PF16622.5 29 ZNF136-201 - 540 1e-07 31.6 84.0 1 15 0.35 2.5e+02 1.5 0.1 17 24 114 121 113 122 0.85 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF136-201 - 540 1e-07 31.6 84.0 2 15 0.98 7e+02 0.1 0.6 9 26 144 161 143 162 0.81 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF136-201 - 540 1e-07 31.6 84.0 3 15 0.037 27 4.7 0.5 7 27 170 189 168 190 0.86 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF136-201 - 540 1e-07 31.6 84.0 4 15 2 1.4e+03 -0.9 0.2 5 12 196 203 194 205 0.69 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF136-201 - 540 1e-07 31.6 84.0 5 15 7.3e-06 0.0053 16.5 0.5 6 25 225 244 222 246 0.93 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF136-201 - 540 1e-07 31.6 84.0 6 15 0.3 2.1e+02 1.8 0.3 5 26 252 273 250 274 0.81 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF136-201 - 540 1e-07 31.6 84.0 7 15 0.0015 1 9.1 0.4 5 23 280 298 277 301 0.91 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF136-201 - 540 1e-07 31.6 84.0 8 15 0.0011 0.76 9.6 0.1 6 26 309 329 306 330 0.92 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF136-201 - 540 1e-07 31.6 84.0 9 15 0.49 3.5e+02 1.1 0.3 7 17 338 348 336 354 0.85 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF136-201 - 540 1e-07 31.6 84.0 10 15 1.1e-05 0.0081 15.9 0.3 6 25 365 384 362 386 0.93 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF136-201 - 540 1e-07 31.6 84.0 11 15 1.2 8.6e+02 -0.2 0.1 5 14 392 401 389 405 0.74 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF136-201 - 540 1e-07 31.6 84.0 12 15 0.011 7.7 6.4 0.3 7 23 422 438 420 441 0.90 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF136-201 - 540 1e-07 31.6 84.0 13 15 0.076 55 3.7 0.2 6 24 449 467 446 470 0.80 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF136-201 - 540 1e-07 31.6 84.0 14 15 0.1 74 3.2 0.6 6 23 477 494 474 496 0.86 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF136-201 - 540 1e-07 31.6 84.0 15 15 0.00067 0.48 10.2 3.1 6 24 505 523 502 526 0.92 zinc-finger C2H2-type # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF136-201.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF136-201.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF136-201.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF136-201.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF136-201.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:00:02 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF136-202.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF136-202.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF136-202.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF136-202.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF136-202.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:00:02 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF136-203.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF136-203.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF136-203.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF136-203.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF136-203.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:00:02 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF136-204.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF136-204.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF136-204.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF136-204.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF136-204.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:00:04 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZNF136-205 - 542 2.2e-98 318.7 126.9 1 15 0.0036 2.8 8.5 0.2 1 15 118 134 118 149 0.72 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF136-205 - 542 2.2e-98 318.7 126.9 2 15 4.7e-08 3.7e-05 24.0 0.7 2 24 157 179 156 181 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF136-205 - 542 2.2e-98 318.7 126.9 3 15 4e-09 3.1e-06 27.3 0.7 3 25 186 208 185 209 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF136-205 - 542 2.2e-98 318.7 126.9 4 15 1.2e-10 9.7e-08 32.1 3.5 2 25 213 236 212 237 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF136-205 - 542 2.2e-98 318.7 126.9 5 15 4.2e-09 3.3e-06 27.3 1.7 2 22 241 261 240 265 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF136-205 - 542 2.2e-98 318.7 126.9 6 15 3.3e-10 2.6e-07 30.8 2.8 2 25 269 292 268 293 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF136-205 - 542 2.2e-98 318.7 126.9 7 15 1.8e-11 1.4e-08 34.8 1.1 2 25 297 320 296 321 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF136-205 - 542 2.2e-98 318.7 126.9 8 15 6.9e-11 5.4e-08 32.9 0.4 1 25 324 348 324 349 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF136-205 - 542 2.2e-98 318.7 126.9 9 15 1.6e-09 1.3e-06 28.6 2.5 5 25 356 376 353 377 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF136-205 - 542 2.2e-98 318.7 126.9 10 15 9.9e-10 7.7e-07 29.3 2.2 2 22 381 401 380 405 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF136-205 - 542 2.2e-98 318.7 126.9 11 15 6.6e-10 5.1e-07 29.8 2.6 4 26 411 433 409 433 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF136-205 - 542 2.2e-98 318.7 126.9 12 15 4.6e-11 3.6e-08 33.5 0.9 5 25 440 460 436 461 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF136-205 - 542 2.2e-98 318.7 126.9 13 15 6.9e-09 5.4e-06 26.6 1.3 2 25 465 488 464 489 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF136-205 - 542 2.2e-98 318.7 126.9 14 15 8.2e-09 6.4e-06 26.4 5.4 2 25 493 516 492 517 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF136-205 - 542 2.2e-98 318.7 126.9 15 15 0.03 23 5.6 0.1 2 18 521 538 520 538 0.88 Zinc-finger double domain zf-C2H2_4 PF13894.6 24 ZNF136-205 - 542 2.7e-49 161.5 122.9 1 15 0.6 4.7e+02 2.1 0.0 13 23 116 126 110 127 0.80 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF136-205 - 542 2.7e-49 161.5 122.9 2 15 0.2 1.6e+02 3.6 1.3 6 23 147 164 145 165 0.86 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF136-205 - 542 2.7e-49 161.5 122.9 3 15 3.1e-06 0.0024 18.6 0.6 3 23 172 192 170 193 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF136-205 - 542 2.7e-49 161.5 122.9 4 15 5e-06 0.0039 17.9 1.3 1 23 198 220 198 221 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF136-205 - 542 2.7e-49 161.5 122.9 5 15 1.6e-06 0.0012 19.5 1.4 1 23 226 248 226 249 0.97 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF136-205 - 542 2.7e-49 161.5 122.9 6 15 3.2e-06 0.0025 18.5 2.1 1 23 254 276 254 277 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF136-205 - 542 2.7e-49 161.5 122.9 7 15 1.5e-06 0.0012 19.5 2.6 1 23 282 304 282 305 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF136-205 - 542 2.7e-49 161.5 122.9 8 15 4.1e-05 0.032 15.1 0.4 1 23 310 332 310 333 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF136-205 - 542 2.7e-49 161.5 122.9 9 15 5.3e-06 0.0041 17.8 0.8 1 23 338 360 338 361 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF136-205 - 542 2.7e-49 161.5 122.9 10 15 8e-07 0.00062 20.4 1.0 1 23 366 388 366 389 0.97 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF136-205 - 542 2.7e-49 161.5 122.9 11 15 2.2e-06 0.0017 19.0 2.1 1 23 394 416 394 417 0.97 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF136-205 - 542 2.7e-49 161.5 122.9 12 15 3.3e-06 0.0026 18.5 1.2 1 23 422 444 422 445 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF136-205 - 542 2.7e-49 161.5 122.9 13 15 1.6e-05 0.012 16.3 0.7 1 23 450 472 450 473 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF136-205 - 542 2.7e-49 161.5 122.9 14 15 1.6e-05 0.013 16.3 1.9 1 23 478 500 478 501 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF136-205 - 542 2.7e-49 161.5 122.9 15 15 4.6e-06 0.0036 18.0 3.9 1 23 506 528 506 529 0.96 C2H2-type zinc finger zf-C2H2 PF00096.26 23 ZNF136-205 - 542 1.2e-47 157.8 127.4 1 16 3 2.3e+03 -0.6 0.1 15 21 64 70 61 71 0.84 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF136-205 - 542 1.2e-47 157.8 127.4 2 16 0.13 1e+02 3.6 0.1 13 23 116 126 111 126 0.92 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF136-205 - 542 1.2e-47 157.8 127.4 3 16 0.017 13 6.5 2.0 5 23 146 164 145 164 0.92 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF136-205 - 542 1.2e-47 157.8 127.4 4 16 1.8e-05 0.014 15.8 1.2 1 23 170 192 170 192 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF136-205 - 542 1.2e-47 157.8 127.4 5 16 1e-06 0.00081 19.7 1.7 1 23 198 220 198 220 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF136-205 - 542 1.2e-47 157.8 127.4 6 16 0.00011 0.09 13.3 1.6 1 23 226 248 226 248 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF136-205 - 542 1.2e-47 157.8 127.4 7 16 4.5e-07 0.00035 20.9 2.0 1 23 254 276 254 276 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF136-205 - 542 1.2e-47 157.8 127.4 8 16 5.5e-05 0.043 14.3 2.8 1 23 282 304 282 304 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF136-205 - 542 1.2e-47 157.8 127.4 9 16 1.4e-06 0.0011 19.3 0.3 1 23 310 332 310 332 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF136-205 - 542 1.2e-47 157.8 127.4 10 16 1e-07 8e-05 22.9 0.7 1 23 338 360 338 360 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF136-205 - 542 1.2e-47 157.8 127.4 11 16 0.00025 0.2 12.2 1.0 1 23 366 388 366 388 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF136-205 - 542 1.2e-47 157.8 127.4 12 16 5.1e-06 0.004 17.5 2.4 1 23 394 416 394 416 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF136-205 - 542 1.2e-47 157.8 127.4 13 16 1e-06 0.00079 19.7 1.4 1 23 422 444 422 444 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF136-205 - 542 1.2e-47 157.8 127.4 14 16 7.4e-06 0.0058 17.0 0.9 1 23 450 472 450 472 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF136-205 - 542 1.2e-47 157.8 127.4 15 16 3.3e-07 0.00026 21.3 2.2 1 23 478 500 478 500 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF136-205 - 542 1.2e-47 157.8 127.4 16 16 0.0002 0.16 12.5 5.3 1 23 506 528 506 528 0.98 Zinc finger, C2H2 type zf-C2H2_6 PF13912.6 27 ZNF136-205 - 542 5e-26 90.1 95.5 1 13 0.00016 0.13 12.3 0.3 2 24 170 192 169 194 0.82 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF136-205 - 542 5e-26 90.1 95.5 2 13 0.00081 0.63 10.1 0.8 2 24 198 220 198 223 0.75 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF136-205 - 542 5e-26 90.1 95.5 3 13 2.9e-05 0.022 14.7 1.1 2 24 226 248 226 250 0.95 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF136-205 - 542 5e-26 90.1 95.5 4 13 0.00037 0.29 11.2 1.3 2 14 254 266 254 273 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF136-205 - 542 5e-26 90.1 95.5 5 13 0.004 3.1 7.9 1.7 2 12 282 292 282 305 0.88 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF136-205 - 542 5e-26 90.1 95.5 6 13 3.6e-06 0.0028 17.6 0.5 2 22 310 330 310 334 0.90 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF136-205 - 542 5e-26 90.1 95.5 7 13 0.00074 0.58 10.2 0.4 2 13 338 349 338 350 0.95 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF136-205 - 542 5e-26 90.1 95.5 8 13 1.6e-05 0.012 15.6 0.5 2 24 366 388 366 391 0.95 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF136-205 - 542 5e-26 90.1 95.5 9 13 0.00025 0.19 11.8 0.9 2 14 394 406 394 418 0.83 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF136-205 - 542 5e-26 90.1 95.5 10 13 0.00078 0.61 10.2 0.8 2 24 422 444 422 447 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF136-205 - 542 5e-26 90.1 95.5 11 13 4.5e-06 0.0035 17.3 1.1 2 20 450 468 450 472 0.95 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF136-205 - 542 5e-26 90.1 95.5 12 13 0.0022 1.7 8.7 1.9 2 24 478 500 478 503 0.86 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF136-205 - 542 5e-26 90.1 95.5 13 13 0.051 40 4.4 1.0 2 11 506 515 506 516 0.86 C2H2-type zinc finger KRAB PF01352.27 42 ZNF136-205 - 542 4.9e-23 80.5 0.3 1 1 9.8e-26 7.7e-23 79.9 0.3 1 42 5 46 5 46 0.98 KRAB box zf-C2H2_jaz PF12171.8 27 ZNF136-205 - 542 3.4e-15 55.9 72.1 1 14 0.14 1.1e+02 3.2 0.5 8 21 148 161 146 162 0.88 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF136-205 - 542 3.4e-15 55.9 72.1 2 14 0.0084 6.6 7.2 0.3 2 23 170 191 169 193 0.85 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF136-205 - 542 3.4e-15 55.9 72.1 3 14 0.00068 0.53 10.6 0.2 2 24 198 220 197 220 0.95 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF136-205 - 542 3.4e-15 55.9 72.1 4 14 0.15 1.2e+02 3.2 0.3 2 11 226 235 225 245 0.84 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF136-205 - 542 3.4e-15 55.9 72.1 5 14 5e-05 0.039 14.3 0.1 2 22 254 274 253 274 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF136-205 - 542 3.4e-15 55.9 72.1 6 14 0.13 1e+02 3.3 0.6 2 22 282 302 281 304 0.75 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF136-205 - 542 3.4e-15 55.9 72.1 7 14 0.42 3.3e+02 1.7 0.3 2 12 310 320 309 320 0.88 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF136-205 - 542 3.4e-15 55.9 72.1 8 14 1.7e-05 0.013 15.7 0.2 2 24 338 360 337 360 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF136-205 - 542 3.4e-15 55.9 72.1 9 14 2.2 1.7e+03 -0.5 0.2 2 8 366 372 365 376 0.77 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF136-205 - 542 3.4e-15 55.9 72.1 10 14 0.0034 2.6 8.4 0.1 2 24 394 416 393 416 0.89 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF136-205 - 542 3.4e-15 55.9 72.1 11 14 0.00049 0.38 11.1 0.2 2 24 422 444 421 444 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF136-205 - 542 3.4e-15 55.9 72.1 12 14 0.016 12 6.3 0.3 2 21 450 469 449 469 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF136-205 - 542 3.4e-15 55.9 72.1 13 14 0.00013 0.099 13.0 0.2 2 24 478 500 477 500 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF136-205 - 542 3.4e-15 55.9 72.1 14 14 0.095 74 3.8 1.4 4 24 508 528 505 529 0.90 Zinc-finger double-stranded RNA-binding Zn-ribbon_8 PF09723.10 40 ZNF136-205 - 542 8.4e-14 51.4 73.4 1 12 0.0045 3.5 7.8 0.1 6 21 170 185 169 191 0.85 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF136-205 - 542 8.4e-14 51.4 73.4 2 12 0.0014 1.1 9.5 7.1 6 35 198 234 197 238 0.80 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF136-205 - 542 8.4e-14 51.4 73.4 3 12 0.004 3.2 8.0 1.3 6 19 226 239 225 250 0.78 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF136-205 - 542 8.4e-14 51.4 73.4 4 12 0.00014 0.11 12.6 3.0 6 34 254 289 253 292 0.75 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF136-205 - 542 8.4e-14 51.4 73.4 5 12 0.0014 1.1 9.4 6.2 6 34 282 317 280 319 0.84 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF136-205 - 542 8.4e-14 51.4 73.4 6 12 3.7e-05 0.029 14.5 2.0 6 36 310 347 309 350 0.81 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF136-205 - 542 8.4e-14 51.4 73.4 7 12 0.0031 2.4 8.4 5.9 6 34 338 373 337 379 0.78 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF136-205 - 542 8.4e-14 51.4 73.4 8 12 0.011 8.3 6.6 1.5 6 20 366 380 365 388 0.79 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF136-205 - 542 8.4e-14 51.4 73.4 9 12 2e-05 0.016 15.3 1.9 6 34 394 429 393 433 0.72 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF136-205 - 542 8.4e-14 51.4 73.4 10 12 0.00026 0.2 11.8 4.4 6 35 450 486 449 488 0.77 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF136-205 - 542 8.4e-14 51.4 73.4 11 12 0.0039 3.1 8.0 6.5 6 34 478 513 476 519 0.82 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF136-205 - 542 8.4e-14 51.4 73.4 12 12 0.052 41 4.4 1.9 6 16 506 516 505 537 0.77 Zinc ribbon domain Zn_ribbon_SprT PF17283.2 38 ZNF136-205 - 542 3.3e-12 46.1 53.9 1 9 0.33 2.5e+02 1.7 0.3 19 33 156 179 150 189 0.68 SprT-like zinc ribbon domain Zn_ribbon_SprT PF17283.2 38 ZNF136-205 - 542 3.3e-12 46.1 53.9 2 9 0.00052 0.4 10.6 0.4 5 23 198 216 197 221 0.95 SprT-like zinc ribbon domain Zn_ribbon_SprT PF17283.2 38 ZNF136-205 - 542 3.3e-12 46.1 53.9 3 9 1.1e-05 0.0089 15.9 1.1 5 33 226 263 225 268 0.91 SprT-like zinc ribbon domain Zn_ribbon_SprT PF17283.2 38 ZNF136-205 - 542 3.3e-12 46.1 53.9 4 9 0.013 9.9 6.2 3.2 5 34 254 291 254 294 0.90 SprT-like zinc ribbon domain Zn_ribbon_SprT PF17283.2 38 ZNF136-205 - 542 3.3e-12 46.1 53.9 5 9 0.00019 0.15 12.0 1.1 5 34 310 347 309 350 0.93 SprT-like zinc ribbon domain Zn_ribbon_SprT PF17283.2 38 ZNF136-205 - 542 3.3e-12 46.1 53.9 6 9 9.3e-05 0.072 13.0 0.2 5 32 366 402 365 408 0.91 SprT-like zinc ribbon domain Zn_ribbon_SprT PF17283.2 38 ZNF136-205 - 542 3.3e-12 46.1 53.9 7 9 0.0025 1.9 8.4 0.1 21 35 414 432 404 435 0.78 SprT-like zinc ribbon domain Zn_ribbon_SprT PF17283.2 38 ZNF136-205 - 542 3.3e-12 46.1 53.9 8 9 0.00026 0.2 11.6 0.9 5 35 450 488 449 491 0.93 SprT-like zinc ribbon domain Zn_ribbon_SprT PF17283.2 38 ZNF136-205 - 542 3.3e-12 46.1 53.9 9 9 0.08 62 3.6 2.7 5 24 506 525 492 537 0.75 SprT-like zinc ribbon domain DUF3268 PF11672.8 118 ZNF136-205 - 542 1.3e-08 35.2 41.5 1 9 1.6 1.2e+03 -0.2 0.0 26 37 165 176 150 186 0.77 zinc-finger-containing domain DUF3268 PF11672.8 118 ZNF136-205 - 542 1.3e-08 35.2 41.5 2 9 0.0031 2.5 8.5 1.7 2 39 197 234 196 246 0.86 zinc-finger-containing domain DUF3268 PF11672.8 118 ZNF136-205 - 542 1.3e-08 35.2 41.5 3 9 0.00067 0.52 10.6 0.7 3 43 254 294 252 304 0.86 zinc-finger-containing domain DUF3268 PF11672.8 118 ZNF136-205 - 542 1.3e-08 35.2 41.5 4 9 0.0015 1.2 9.5 1.2 2 38 281 317 280 334 0.91 zinc-finger-containing domain DUF3268 PF11672.8 118 ZNF136-205 - 542 1.3e-08 35.2 41.5 5 9 0.0013 1 9.7 0.6 2 40 309 347 308 359 0.88 zinc-finger-containing domain DUF3268 PF11672.8 118 ZNF136-205 - 542 1.3e-08 35.2 41.5 6 9 0.00029 0.22 11.8 1.3 2 40 337 375 336 385 0.87 zinc-finger-containing domain DUF3268 PF11672.8 118 ZNF136-205 - 542 1.3e-08 35.2 41.5 7 9 5.9e-05 0.046 14.0 0.4 3 40 394 432 392 443 0.86 zinc-finger-containing domain DUF3268 PF11672.8 118 ZNF136-205 - 542 1.3e-08 35.2 41.5 8 9 0.00011 0.082 13.2 1.6 2 38 421 457 420 469 0.90 zinc-finger-containing domain DUF3268 PF11672.8 118 ZNF136-205 - 542 1.3e-08 35.2 41.5 9 9 0.00069 0.54 10.6 1.2 3 41 478 516 476 529 0.85 zinc-finger-containing domain zf-C2H2_11 PF16622.5 29 ZNF136-205 - 542 1.1e-07 31.5 84.0 1 15 0.32 2.5e+02 1.5 0.1 17 24 116 123 115 124 0.85 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF136-205 - 542 1.1e-07 31.5 84.0 2 15 0.91 7.1e+02 0.1 0.6 9 26 146 163 145 164 0.81 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF136-205 - 542 1.1e-07 31.5 84.0 3 15 0.034 27 4.6 0.5 7 27 172 191 170 192 0.86 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF136-205 - 542 1.1e-07 31.5 84.0 4 15 1.9 1.4e+03 -0.9 0.2 5 12 198 205 196 207 0.69 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF136-205 - 542 1.1e-07 31.5 84.0 5 15 6.8e-06 0.0053 16.5 0.5 6 25 227 246 224 248 0.93 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF136-205 - 542 1.1e-07 31.5 84.0 6 15 0.27 2.1e+02 1.8 0.3 5 26 254 275 252 276 0.81 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF136-205 - 542 1.1e-07 31.5 84.0 7 15 0.0014 1.1 9.1 0.4 5 23 282 300 279 303 0.91 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF136-205 - 542 1.1e-07 31.5 84.0 8 15 0.00098 0.77 9.6 0.1 6 26 311 331 308 332 0.92 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF136-205 - 542 1.1e-07 31.5 84.0 9 15 0.45 3.5e+02 1.1 0.3 7 17 340 350 338 356 0.85 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF136-205 - 542 1.1e-07 31.5 84.0 10 15 1e-05 0.0082 15.9 0.3 6 25 367 386 364 388 0.93 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF136-205 - 542 1.1e-07 31.5 84.0 11 15 1.1 8.7e+02 -0.2 0.1 5 14 394 403 391 407 0.74 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF136-205 - 542 1.1e-07 31.5 84.0 12 15 0.01 7.8 6.4 0.3 7 23 424 440 422 443 0.90 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF136-205 - 542 1.1e-07 31.5 84.0 13 15 0.07 55 3.6 0.2 6 24 451 469 448 472 0.80 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF136-205 - 542 1.1e-07 31.5 84.0 14 15 0.095 74 3.2 0.6 6 23 479 496 476 498 0.86 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF136-205 - 542 1.1e-07 31.5 84.0 15 15 0.00062 0.48 10.2 3.1 6 24 507 525 504 528 0.92 zinc-finger C2H2-type # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF136-205.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF136-205.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF136-205.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF136-205.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF136-205.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:00:04 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF136-206.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF136-206.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF136-206.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF136-206.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF136-206.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:00:05 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZNF138-201 - 319 4.6e-34 115.3 53.5 1 6 3.3e-05 0.02 15.3 3.5 3 23 155 175 153 176 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF138-201 - 319 4.6e-34 115.3 53.5 2 6 9.4e-09 5.6e-06 26.5 2.4 2 25 182 205 181 205 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF138-201 - 319 4.6e-34 115.3 53.5 3 6 8.8e-09 5.3e-06 26.6 2.0 7 24 215 232 210 234 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF138-201 - 319 4.6e-34 115.3 53.5 4 6 1.1e-08 6.8e-06 26.3 0.8 2 26 238 262 237 262 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF138-201 - 319 4.6e-34 115.3 53.5 5 6 1.2e-10 7e-08 32.6 2.6 1 26 265 290 265 290 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF138-201 - 319 4.6e-34 115.3 53.5 6 6 8.2e-07 0.00049 20.4 0.1 2 25 294 317 293 317 0.93 Zinc-finger double domain KRAB PF01352.27 42 ZNF138-201 - 319 5.7e-23 80.3 0.2 1 1 1.6e-25 9.6e-23 79.6 0.2 1 42 3 44 3 44 0.98 KRAB box zf-C2H2 PF00096.26 23 ZNF138-201 - 319 8.5e-20 70.0 46.0 1 6 0.00033 0.2 12.2 3.9 1 23 167 189 167 189 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF138-201 - 319 8.5e-20 70.0 46.0 2 6 0.00039 0.24 12.0 0.4 1 13 195 207 195 212 0.80 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF138-201 - 319 8.5e-20 70.0 46.0 3 6 3.5e-05 0.021 15.3 0.2 1 20 223 242 223 244 0.93 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF138-201 - 319 8.5e-20 70.0 46.0 4 6 2e-08 1.2e-05 25.5 3.8 1 23 251 273 251 273 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF138-201 - 319 8.5e-20 70.0 46.0 5 6 1.3e-07 7.8e-05 22.9 0.2 1 20 279 298 279 300 0.95 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF138-201 - 319 8.5e-20 70.0 46.0 6 6 0.0019 1.2 9.8 0.2 1 11 307 317 307 319 0.92 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZNF138-201 - 319 7.7e-11 41.9 45.1 1 6 0.0046 2.8 9.0 3.3 1 23 167 189 167 190 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF138-201 - 319 7.7e-11 41.9 45.1 2 6 0.005 3 8.9 0.3 1 12 195 205 195 212 0.81 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF138-201 - 319 7.7e-11 41.9 45.1 3 6 0.00037 0.22 12.4 0.3 1 20 223 242 223 244 0.91 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF138-201 - 319 7.7e-11 41.9 45.1 4 6 3e-05 0.018 15.8 3.0 1 23 251 273 251 274 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF138-201 - 319 7.7e-11 41.9 45.1 5 6 1.6e-05 0.0096 16.7 0.2 1 20 279 298 279 300 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF138-201 - 319 7.7e-11 41.9 45.1 6 6 0.03 18 6.5 0.2 1 11 307 317 307 319 0.89 C2H2-type zinc finger XPA_N PF01286.18 32 ZNF138-201 - 319 5.7e-09 35.9 20.9 1 6 0.11 68 3.6 0.8 3 12 168 177 165 185 0.78 XPA protein N-terminal XPA_N PF01286.18 32 ZNF138-201 - 319 5.7e-09 35.9 20.9 2 6 0.0024 1.4 9.0 0.2 3 13 196 206 195 208 0.86 XPA protein N-terminal XPA_N PF01286.18 32 ZNF138-201 - 319 5.7e-09 35.9 20.9 3 6 0.0026 1.5 8.9 0.1 3 17 224 238 222 242 0.84 XPA protein N-terminal XPA_N PF01286.18 32 ZNF138-201 - 319 5.7e-09 35.9 20.9 4 6 0.0041 2.4 8.2 0.1 3 14 252 263 250 269 0.87 XPA protein N-terminal XPA_N PF01286.18 32 ZNF138-201 - 319 5.7e-09 35.9 20.9 5 6 0.0075 4.5 7.4 0.1 3 14 280 291 278 296 0.91 XPA protein N-terminal XPA_N PF01286.18 32 ZNF138-201 - 319 5.7e-09 35.9 20.9 6 6 0.0019 1.2 9.3 0.2 3 14 308 319 306 319 0.87 XPA protein N-terminal # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF138-201.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF138-201.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF138-201.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF138-201.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF138-201.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:00:05 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZNF138-202 - 172 3.6e-38 128.3 45.3 1 6 2.7e-05 0.0087 16.5 3.5 3 23 8 28 6 29 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF138-202 - 172 3.6e-38 128.3 45.3 2 6 7.3e-09 2.4e-06 27.7 2.4 2 25 35 58 34 58 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF138-202 - 172 3.6e-38 128.3 45.3 3 6 7.1e-09 2.3e-06 27.8 2.0 7 24 68 85 63 87 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF138-202 - 172 3.6e-38 128.3 45.3 4 6 8.8e-09 2.9e-06 27.5 0.8 2 26 91 115 90 115 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF138-202 - 172 3.6e-38 128.3 45.3 5 6 9.1e-11 3e-08 33.7 2.6 1 26 118 143 118 143 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF138-202 - 172 3.6e-38 128.3 45.3 6 6 6.5e-07 0.00021 21.6 0.1 2 25 147 170 146 170 0.93 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZNF138-202 - 172 7.1e-22 76.6 44.9 1 6 0.00026 0.084 13.4 3.9 1 23 20 42 20 42 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF138-202 - 172 7.1e-22 76.6 44.9 2 6 0.00033 0.11 13.0 0.4 1 13 48 60 48 65 0.80 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF138-202 - 172 7.1e-22 76.6 44.9 3 6 2.8e-05 0.0091 16.4 0.2 1 20 76 95 76 97 0.94 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF138-202 - 172 7.1e-22 76.6 44.9 4 6 1.6e-08 5.3e-06 26.6 3.8 1 23 104 126 104 126 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF138-202 - 172 7.1e-22 76.6 44.9 5 6 1e-07 3.4e-05 24.1 0.2 1 20 132 151 132 153 0.95 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF138-202 - 172 7.1e-22 76.6 44.9 6 6 0.0017 0.54 10.8 0.2 1 11 160 170 160 172 0.92 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZNF138-202 - 172 3.2e-13 49.3 43.4 1 6 0.0036 1.2 10.2 3.3 1 23 20 42 20 43 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF138-202 - 172 3.2e-13 49.3 43.4 2 6 0.0042 1.4 10.0 0.3 1 12 48 58 48 65 0.81 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF138-202 - 172 3.2e-13 49.3 43.4 3 6 0.0003 0.097 13.6 0.3 1 20 76 95 76 97 0.91 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF138-202 - 172 3.2e-13 49.3 43.4 4 6 2.4e-05 0.0077 17.0 3.0 1 23 104 126 104 127 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF138-202 - 172 3.2e-13 49.3 43.4 5 6 1.3e-05 0.0041 17.8 0.2 1 20 132 151 132 153 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF138-202 - 172 3.2e-13 49.3 43.4 6 6 0.026 8.4 7.5 0.2 1 11 160 170 160 172 0.89 C2H2-type zinc finger XPA_N PF01286.18 32 ZNF138-202 - 172 1.1e-10 41.3 20.9 1 6 0.098 32 4.7 0.8 3 12 21 30 18 38 0.78 XPA protein N-terminal XPA_N PF01286.18 32 ZNF138-202 - 172 1.1e-10 41.3 20.9 2 6 0.0021 0.68 10.0 0.2 3 13 49 59 48 61 0.86 XPA protein N-terminal XPA_N PF01286.18 32 ZNF138-202 - 172 1.1e-10 41.3 20.9 3 6 0.0022 0.7 10.0 0.1 3 17 77 91 75 95 0.84 XPA protein N-terminal XPA_N PF01286.18 32 ZNF138-202 - 172 1.1e-10 41.3 20.9 4 6 0.0035 1.1 9.3 0.1 3 14 105 116 103 122 0.87 XPA protein N-terminal XPA_N PF01286.18 32 ZNF138-202 - 172 1.1e-10 41.3 20.9 5 6 0.0064 2.1 8.5 0.1 3 14 133 144 131 149 0.91 XPA protein N-terminal XPA_N PF01286.18 32 ZNF138-202 - 172 1.1e-10 41.3 20.9 6 6 0.0017 0.55 10.3 0.2 3 14 161 172 159 172 0.87 XPA protein N-terminal Zn-ribbon_8 PF09723.10 40 ZNF138-202 - 172 4.2e-08 33.2 30.8 1 5 0.12 40 4.5 0.3 6 14 20 28 19 41 0.81 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF138-202 - 172 4.2e-08 33.2 30.8 2 5 7.5e-05 0.025 14.7 4.6 6 35 48 84 47 87 0.84 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF138-202 - 172 4.2e-08 33.2 30.8 3 5 0.00035 0.12 12.6 4.0 6 36 76 113 75 115 0.80 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF138-202 - 172 4.2e-08 33.2 30.8 4 5 0.00029 0.095 12.8 5.4 6 34 104 139 102 139 0.88 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF138-202 - 172 4.2e-08 33.2 30.8 5 5 0.00011 0.036 14.2 6.8 6 34 132 167 131 171 0.86 Zinc ribbon domain zf_UBZ PF18439.1 32 ZNF138-202 - 172 1.1e-07 31.3 26.0 1 6 0.048 16 5.2 1.1 2 13 19 30 18 39 0.77 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF138-202 - 172 1.1e-07 31.3 26.0 2 6 0.0029 0.93 9.1 0.2 2 12 47 57 46 60 0.87 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF138-202 - 172 1.1e-07 31.3 26.0 3 6 0.032 11 5.8 0.2 3 15 76 88 74 95 0.81 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF138-202 - 172 1.1e-07 31.3 26.0 4 6 0.0085 2.8 7.6 0.2 3 15 104 116 102 123 0.81 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF138-202 - 172 1.1e-07 31.3 26.0 5 6 0.00058 0.19 11.4 0.2 3 21 132 151 130 151 0.86 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF138-202 - 172 1.1e-07 31.3 26.0 6 6 0.0044 1.4 8.5 0.1 2 12 159 169 158 172 0.83 Ubiquitin-Binding Zinc Finger C1_1 PF00130.22 53 ZNF138-202 - 172 3.1e-07 30.2 27.7 1 4 0.0054 1.7 8.6 7.1 1 37 10 56 10 58 0.89 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF138-202 - 172 3.1e-07 30.2 27.7 2 4 5.8e-05 0.019 14.9 1.9 9 40 45 87 38 90 0.83 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF138-202 - 172 3.1e-07 30.2 27.7 3 4 0.0031 1 9.3 0.6 1 22 94 114 94 120 0.77 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF138-202 - 172 3.1e-07 30.2 27.7 4 4 0.00015 0.05 13.5 2.1 1 36 122 167 122 170 0.85 Phorbol esters/diacylglycerol binding domain (C1 domain) # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF138-202.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF138-202.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF138-202.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF138-202.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF138-202.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:00:06 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZNF138-203 - 172 3.6e-38 128.3 45.3 1 6 2.7e-05 0.0087 16.5 3.5 3 23 8 28 6 29 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF138-203 - 172 3.6e-38 128.3 45.3 2 6 7.3e-09 2.4e-06 27.7 2.4 2 25 35 58 34 58 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF138-203 - 172 3.6e-38 128.3 45.3 3 6 7.1e-09 2.3e-06 27.8 2.0 7 24 68 85 63 87 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF138-203 - 172 3.6e-38 128.3 45.3 4 6 8.8e-09 2.9e-06 27.5 0.8 2 26 91 115 90 115 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF138-203 - 172 3.6e-38 128.3 45.3 5 6 9.1e-11 3e-08 33.7 2.6 1 26 118 143 118 143 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF138-203 - 172 3.6e-38 128.3 45.3 6 6 6.5e-07 0.00021 21.6 0.1 2 25 147 170 146 170 0.93 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZNF138-203 - 172 7.1e-22 76.6 44.9 1 6 0.00026 0.084 13.4 3.9 1 23 20 42 20 42 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF138-203 - 172 7.1e-22 76.6 44.9 2 6 0.00033 0.11 13.0 0.4 1 13 48 60 48 65 0.80 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF138-203 - 172 7.1e-22 76.6 44.9 3 6 2.8e-05 0.0091 16.4 0.2 1 20 76 95 76 97 0.94 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF138-203 - 172 7.1e-22 76.6 44.9 4 6 1.6e-08 5.3e-06 26.6 3.8 1 23 104 126 104 126 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF138-203 - 172 7.1e-22 76.6 44.9 5 6 1e-07 3.4e-05 24.1 0.2 1 20 132 151 132 153 0.95 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF138-203 - 172 7.1e-22 76.6 44.9 6 6 0.0017 0.54 10.8 0.2 1 11 160 170 160 172 0.92 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZNF138-203 - 172 3.2e-13 49.3 43.4 1 6 0.0036 1.2 10.2 3.3 1 23 20 42 20 43 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF138-203 - 172 3.2e-13 49.3 43.4 2 6 0.0042 1.4 10.0 0.3 1 12 48 58 48 65 0.81 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF138-203 - 172 3.2e-13 49.3 43.4 3 6 0.0003 0.097 13.6 0.3 1 20 76 95 76 97 0.91 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF138-203 - 172 3.2e-13 49.3 43.4 4 6 2.4e-05 0.0077 17.0 3.0 1 23 104 126 104 127 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF138-203 - 172 3.2e-13 49.3 43.4 5 6 1.3e-05 0.0041 17.8 0.2 1 20 132 151 132 153 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF138-203 - 172 3.2e-13 49.3 43.4 6 6 0.026 8.4 7.5 0.2 1 11 160 170 160 172 0.89 C2H2-type zinc finger XPA_N PF01286.18 32 ZNF138-203 - 172 1.1e-10 41.3 20.9 1 6 0.098 32 4.7 0.8 3 12 21 30 18 38 0.78 XPA protein N-terminal XPA_N PF01286.18 32 ZNF138-203 - 172 1.1e-10 41.3 20.9 2 6 0.0021 0.68 10.0 0.2 3 13 49 59 48 61 0.86 XPA protein N-terminal XPA_N PF01286.18 32 ZNF138-203 - 172 1.1e-10 41.3 20.9 3 6 0.0022 0.7 10.0 0.1 3 17 77 91 75 95 0.84 XPA protein N-terminal XPA_N PF01286.18 32 ZNF138-203 - 172 1.1e-10 41.3 20.9 4 6 0.0035 1.1 9.3 0.1 3 14 105 116 103 122 0.87 XPA protein N-terminal XPA_N PF01286.18 32 ZNF138-203 - 172 1.1e-10 41.3 20.9 5 6 0.0064 2.1 8.5 0.1 3 14 133 144 131 149 0.91 XPA protein N-terminal XPA_N PF01286.18 32 ZNF138-203 - 172 1.1e-10 41.3 20.9 6 6 0.0017 0.55 10.3 0.2 3 14 161 172 159 172 0.87 XPA protein N-terminal Zn-ribbon_8 PF09723.10 40 ZNF138-203 - 172 4.2e-08 33.2 30.8 1 5 0.12 40 4.5 0.3 6 14 20 28 19 41 0.81 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF138-203 - 172 4.2e-08 33.2 30.8 2 5 7.5e-05 0.025 14.7 4.6 6 35 48 84 47 87 0.84 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF138-203 - 172 4.2e-08 33.2 30.8 3 5 0.00035 0.12 12.6 4.0 6 36 76 113 75 115 0.80 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF138-203 - 172 4.2e-08 33.2 30.8 4 5 0.00029 0.095 12.8 5.4 6 34 104 139 102 139 0.88 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF138-203 - 172 4.2e-08 33.2 30.8 5 5 0.00011 0.036 14.2 6.8 6 34 132 167 131 171 0.86 Zinc ribbon domain zf_UBZ PF18439.1 32 ZNF138-203 - 172 1.1e-07 31.3 26.0 1 6 0.048 16 5.2 1.1 2 13 19 30 18 39 0.77 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF138-203 - 172 1.1e-07 31.3 26.0 2 6 0.0029 0.93 9.1 0.2 2 12 47 57 46 60 0.87 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF138-203 - 172 1.1e-07 31.3 26.0 3 6 0.032 11 5.8 0.2 3 15 76 88 74 95 0.81 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF138-203 - 172 1.1e-07 31.3 26.0 4 6 0.0085 2.8 7.6 0.2 3 15 104 116 102 123 0.81 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF138-203 - 172 1.1e-07 31.3 26.0 5 6 0.00058 0.19 11.4 0.2 3 21 132 151 130 151 0.86 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF138-203 - 172 1.1e-07 31.3 26.0 6 6 0.0044 1.4 8.5 0.1 2 12 159 169 158 172 0.83 Ubiquitin-Binding Zinc Finger C1_1 PF00130.22 53 ZNF138-203 - 172 3.1e-07 30.2 27.7 1 4 0.0054 1.7 8.6 7.1 1 37 10 56 10 58 0.89 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF138-203 - 172 3.1e-07 30.2 27.7 2 4 5.8e-05 0.019 14.9 1.9 9 40 45 87 38 90 0.83 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF138-203 - 172 3.1e-07 30.2 27.7 3 4 0.0031 1 9.3 0.6 1 22 94 114 94 120 0.77 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF138-203 - 172 3.1e-07 30.2 27.7 4 4 0.00015 0.05 13.5 2.1 1 36 122 167 122 170 0.85 Phorbol esters/diacylglycerol binding domain (C1 domain) # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF138-203.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF138-203.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF138-203.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF138-203.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF138-203.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:00:06 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZNF138-204 - 287 1.2e-35 120.4 48.9 1 6 3.1e-05 0.017 15.5 3.5 3 23 123 143 121 144 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF138-204 - 287 1.2e-35 120.4 48.9 2 6 8.7e-09 4.9e-06 26.7 2.4 2 25 150 173 149 173 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF138-204 - 287 1.2e-35 120.4 48.9 3 6 8.2e-09 4.6e-06 26.8 2.0 7 24 183 200 178 202 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF138-204 - 287 1.2e-35 120.4 48.9 4 6 1.1e-08 5.9e-06 26.5 0.8 2 26 206 230 205 230 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF138-204 - 287 1.2e-35 120.4 48.9 5 6 1.1e-10 6.1e-08 32.7 2.6 1 26 233 258 233 258 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF138-204 - 287 1.2e-35 120.4 48.9 6 6 7.6e-07 0.00043 20.6 0.1 2 25 262 285 261 285 0.93 Zinc-finger double domain KRAB PF01352.27 42 ZNF138-204 - 287 2.1e-20 72.1 0.4 1 1 6.3e-23 3.5e-20 71.4 0.4 6 42 2 38 1 38 0.99 KRAB box zf-C2H2 PF00096.26 23 ZNF138-204 - 287 2.6e-20 71.6 44.9 1 6 0.00031 0.17 12.4 3.9 1 23 135 157 135 157 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF138-204 - 287 2.6e-20 71.6 44.9 2 6 0.00037 0.21 12.1 0.4 1 13 163 175 163 180 0.80 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF138-204 - 287 2.6e-20 71.6 44.9 3 6 3.2e-05 0.018 15.5 0.2 1 20 191 210 191 212 0.93 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF138-204 - 287 2.6e-20 71.6 44.9 4 6 1.9e-08 1.1e-05 25.6 3.8 1 23 219 241 219 241 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF138-204 - 287 2.6e-20 71.6 44.9 5 6 1.2e-07 6.8e-05 23.1 0.2 1 20 247 266 247 268 0.95 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF138-204 - 287 2.6e-20 71.6 44.9 6 6 0.0018 1 10.0 0.2 1 11 275 285 275 287 0.92 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZNF138-204 - 287 3.9e-11 42.8 45.1 1 6 0.0043 2.4 9.2 3.3 1 23 135 157 135 158 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF138-204 - 287 3.9e-11 42.8 45.1 2 6 0.0047 2.6 9.1 0.3 1 12 163 173 163 180 0.81 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF138-204 - 287 3.9e-11 42.8 45.1 3 6 0.00035 0.2 12.6 0.3 1 20 191 210 191 212 0.91 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF138-204 - 287 3.9e-11 42.8 45.1 4 6 2.8e-05 0.016 16.0 3.0 1 23 219 241 219 242 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF138-204 - 287 3.9e-11 42.8 45.1 5 6 1.5e-05 0.0083 16.9 0.2 1 20 247 266 247 268 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF138-204 - 287 3.9e-11 42.8 45.1 6 6 0.028 16 6.7 0.2 1 11 275 285 275 287 0.89 C2H2-type zinc finger XPA_N PF01286.18 32 ZNF138-204 - 287 2.8e-09 36.8 20.9 1 6 0.11 60 3.8 0.8 3 12 136 145 133 153 0.78 XPA protein N-terminal XPA_N PF01286.18 32 ZNF138-204 - 287 2.8e-09 36.8 20.9 2 6 0.0023 1.3 9.2 0.2 3 13 164 174 163 176 0.86 XPA protein N-terminal XPA_N PF01286.18 32 ZNF138-204 - 287 2.8e-09 36.8 20.9 3 6 0.0024 1.4 9.1 0.1 3 17 192 206 190 210 0.84 XPA protein N-terminal XPA_N PF01286.18 32 ZNF138-204 - 287 2.8e-09 36.8 20.9 4 6 0.0038 2.2 8.4 0.1 3 14 220 231 218 237 0.87 XPA protein N-terminal XPA_N PF01286.18 32 ZNF138-204 - 287 2.8e-09 36.8 20.9 5 6 0.0071 4 7.6 0.1 3 14 248 259 246 264 0.91 XPA protein N-terminal XPA_N PF01286.18 32 ZNF138-204 - 287 2.8e-09 36.8 20.9 6 6 0.0018 1 9.5 0.2 3 14 276 287 274 287 0.87 XPA protein N-terminal # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF138-204.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF138-204.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF138-204.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF138-204.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF138-204.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:00:07 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZNF138-205 - 293 1.4e-35 120.1 48.9 1 6 3.3e-05 0.018 15.5 3.5 3 23 129 149 127 150 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF138-205 - 293 1.4e-35 120.1 48.9 2 6 9.2e-09 5e-06 26.7 2.4 2 25 156 179 155 179 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF138-205 - 293 1.4e-35 120.1 48.9 3 6 8.7e-09 4.7e-06 26.8 2.0 7 24 189 206 184 208 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF138-205 - 293 1.4e-35 120.1 48.9 4 6 1.1e-08 6e-06 26.4 0.8 2 26 212 236 211 236 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF138-205 - 293 1.4e-35 120.1 48.9 5 6 1.2e-10 6.3e-08 32.7 2.6 1 26 239 264 239 264 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF138-205 - 293 1.4e-35 120.1 48.9 6 6 8.1e-07 0.00044 20.6 0.1 2 25 268 291 267 291 0.93 Zinc-finger double domain KRAB PF01352.27 42 ZNF138-205 - 293 5e-23 80.5 0.2 1 1 1.6e-25 8.4e-23 79.7 0.2 1 42 3 44 3 44 0.98 KRAB box zf-C2H2 PF00096.26 23 ZNF138-205 - 293 3.1e-20 71.4 44.9 1 6 0.00032 0.18 12.4 3.9 1 23 141 163 141 163 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF138-205 - 293 3.1e-20 71.4 44.9 2 6 0.00039 0.21 12.1 0.4 1 13 169 181 169 186 0.80 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF138-205 - 293 3.1e-20 71.4 44.9 3 6 3.4e-05 0.019 15.4 0.2 1 20 197 216 197 218 0.93 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF138-205 - 293 3.1e-20 71.4 44.9 4 6 2e-08 1.1e-05 25.6 3.8 1 23 225 247 225 247 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF138-205 - 293 3.1e-20 71.4 44.9 5 6 1.3e-07 7e-05 23.1 0.2 1 20 253 272 253 274 0.95 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF138-205 - 293 3.1e-20 71.4 44.9 6 6 0.0019 1 9.9 0.2 1 11 281 291 281 293 0.92 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZNF138-205 - 293 4.5e-11 42.6 45.0 1 6 0.0045 2.5 9.2 3.3 1 23 141 163 141 164 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF138-205 - 293 4.5e-11 42.6 45.0 2 6 0.005 2.7 9.1 0.3 1 12 169 179 169 186 0.81 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF138-205 - 293 4.5e-11 42.6 45.0 3 6 0.00037 0.2 12.6 0.3 1 20 197 216 197 218 0.91 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF138-205 - 293 4.5e-11 42.6 45.0 4 6 3e-05 0.016 16.0 3.0 1 23 225 247 225 248 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF138-205 - 293 4.5e-11 42.6 45.0 5 6 1.6e-05 0.0086 16.8 0.2 1 20 253 272 253 274 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF138-205 - 293 4.5e-11 42.6 45.0 6 6 0.03 16 6.6 0.2 1 11 281 291 281 293 0.89 C2H2-type zinc finger XPA_N PF01286.18 32 ZNF138-205 - 293 3.2e-09 36.6 20.9 1 6 0.11 62 3.8 0.8 3 12 142 151 139 159 0.78 XPA protein N-terminal XPA_N PF01286.18 32 ZNF138-205 - 293 3.2e-09 36.6 20.9 2 6 0.0024 1.3 9.1 0.2 3 13 170 180 169 182 0.86 XPA protein N-terminal XPA_N PF01286.18 32 ZNF138-205 - 293 3.2e-09 36.6 20.9 3 6 0.0026 1.4 9.0 0.1 3 17 198 212 196 216 0.84 XPA protein N-terminal XPA_N PF01286.18 32 ZNF138-205 - 293 3.2e-09 36.6 20.9 4 6 0.0041 2.2 8.4 0.1 3 14 226 237 224 243 0.87 XPA protein N-terminal XPA_N PF01286.18 32 ZNF138-205 - 293 3.2e-09 36.6 20.9 5 6 0.0075 4.1 7.5 0.1 3 14 254 265 252 270 0.91 XPA protein N-terminal XPA_N PF01286.18 32 ZNF138-205 - 293 3.2e-09 36.6 20.9 6 6 0.0019 1 9.4 0.2 3 14 282 293 280 293 0.87 XPA protein N-terminal # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF138-205.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF138-205.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF138-205.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF138-205.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF138-205.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:00:07 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZNF138-206 - 262 4.3e-36 121.7 48.9 1 6 3.3e-05 0.015 15.7 3.5 3 23 98 118 96 119 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF138-206 - 262 4.3e-36 121.7 48.9 2 6 9.2e-09 4.3e-06 26.9 2.4 2 25 125 148 124 148 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF138-206 - 262 4.3e-36 121.7 48.9 3 6 8.7e-09 4.1e-06 27.0 2.0 7 24 158 175 153 177 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF138-206 - 262 4.3e-36 121.7 48.9 4 6 1.1e-08 5.2e-06 26.6 0.8 2 26 181 205 180 205 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF138-206 - 262 4.3e-36 121.7 48.9 5 6 1.1e-10 5.4e-08 32.9 2.6 1 26 208 233 208 233 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF138-206 - 262 4.3e-36 121.7 48.9 6 6 8e-07 0.00038 20.8 0.1 2 25 237 260 236 260 0.93 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZNF138-206 - 262 1.3e-20 72.6 44.9 1 6 0.00032 0.15 12.6 3.9 1 23 110 132 110 132 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF138-206 - 262 1.3e-20 72.6 44.9 2 6 0.00039 0.19 12.3 0.4 1 13 138 150 138 155 0.80 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF138-206 - 262 1.3e-20 72.6 44.9 3 6 3.4e-05 0.016 15.6 0.2 1 20 166 185 166 187 0.93 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF138-206 - 262 1.3e-20 72.6 44.9 4 6 2e-08 9.5e-06 25.8 3.8 1 23 194 216 194 216 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF138-206 - 262 1.3e-20 72.6 44.9 5 6 1.3e-07 6e-05 23.3 0.2 1 20 222 241 222 243 0.95 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF138-206 - 262 1.3e-20 72.6 44.9 6 6 0.0019 0.91 10.1 0.2 1 11 250 260 250 262 0.92 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZNF138-206 - 262 1.8e-11 43.8 45.1 1 6 0.0045 2.1 9.4 3.3 1 23 110 132 110 133 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF138-206 - 262 1.8e-11 43.8 45.1 2 6 0.005 2.3 9.3 0.3 1 12 138 148 138 155 0.81 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF138-206 - 262 1.8e-11 43.8 45.1 3 6 0.00037 0.17 12.8 0.3 1 20 166 185 166 187 0.91 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF138-206 - 262 1.8e-11 43.8 45.1 4 6 3e-05 0.014 16.2 3.0 1 23 194 216 194 217 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF138-206 - 262 1.8e-11 43.8 45.1 5 6 1.6e-05 0.0074 17.0 0.2 1 20 222 241 222 243 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF138-206 - 262 1.8e-11 43.8 45.1 6 6 0.03 14 6.8 0.2 1 11 250 260 250 262 0.89 C2H2-type zinc finger XPA_N PF01286.18 32 ZNF138-206 - 262 1.5e-09 37.8 20.9 1 6 0.11 54 3.9 0.8 3 12 111 120 108 128 0.78 XPA protein N-terminal XPA_N PF01286.18 32 ZNF138-206 - 262 1.5e-09 37.8 20.9 2 6 0.0024 1.1 9.3 0.2 3 13 139 149 138 151 0.86 XPA protein N-terminal XPA_N PF01286.18 32 ZNF138-206 - 262 1.5e-09 37.8 20.9 3 6 0.0026 1.2 9.2 0.1 3 17 167 181 165 185 0.84 XPA protein N-terminal XPA_N PF01286.18 32 ZNF138-206 - 262 1.5e-09 37.8 20.9 4 6 0.0041 1.9 8.6 0.1 3 14 195 206 193 212 0.87 XPA protein N-terminal XPA_N PF01286.18 32 ZNF138-206 - 262 1.5e-09 37.8 20.9 5 6 0.0075 3.5 7.7 0.1 3 14 223 234 221 239 0.91 XPA protein N-terminal XPA_N PF01286.18 32 ZNF138-206 - 262 1.5e-09 37.8 20.9 6 6 0.0019 0.92 9.6 0.2 3 14 251 262 249 262 0.87 XPA protein N-terminal Zn-ribbon_8 PF09723.10 40 ZNF138-206 - 262 7.4e-07 29.2 32.5 1 6 4.1 1.9e+03 -1.0 0.0 10 23 83 96 82 102 0.80 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF138-206 - 262 7.4e-07 29.2 32.5 2 6 0.14 67 3.7 0.3 6 14 110 118 109 131 0.81 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF138-206 - 262 7.4e-07 29.2 32.5 3 6 7.4e-05 0.035 14.2 4.2 6 35 138 174 137 177 0.84 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF138-206 - 262 7.4e-07 29.2 32.5 4 6 0.00043 0.2 11.8 3.9 6 36 166 203 164 205 0.80 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF138-206 - 262 7.4e-07 29.2 32.5 5 6 0.00033 0.16 12.1 5.1 6 34 194 229 192 229 0.88 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF138-206 - 262 7.4e-07 29.2 32.5 6 6 0.00014 0.068 13.3 6.7 6 34 222 257 221 260 0.86 Zinc ribbon domain # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF138-206.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF138-206.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF138-206.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF138-206.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF138-206.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:00:08 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- KRAB PF01352.27 42 ZNF138-207 - 126 1.2e-23 82.5 0.2 1 1 1.1e-27 2e-23 81.8 0.2 1 42 3 44 3 44 0.98 KRAB box # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF138-207.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF138-207.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF138-207.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF138-207.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF138-207.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:00:08 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- KRAB PF01352.27 42 ZNF140-201 - 114 4.4e-26 90.3 0.1 1 1 4.2e-30 7.5e-26 89.5 0.1 1 42 5 46 5 46 0.99 KRAB box # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF140-201.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF140-201.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF140-201.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF140-201.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF140-201.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:00:08 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZNF140-202 - 457 6.3e-82 266.7 63.6 1 11 6.9e-06 0.0054 17.1 0.0 1 25 147 171 147 172 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF140-202 - 457 6.3e-82 266.7 63.6 2 11 1.4e-11 1.1e-08 35.1 0.5 1 25 175 199 175 200 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF140-202 - 457 6.3e-82 266.7 63.6 3 11 1.4e-10 1.1e-07 31.9 2.6 1 25 203 227 203 228 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF140-202 - 457 6.3e-82 266.7 63.6 4 11 1.7e-11 1.3e-08 34.9 0.5 4 25 234 255 232 256 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF140-202 - 457 6.3e-82 266.7 63.6 5 11 7.8e-09 6.1e-06 26.4 0.3 1 26 259 284 259 284 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF140-202 - 457 6.3e-82 266.7 63.6 6 11 1.8e-11 1.4e-08 34.8 0.2 2 25 288 311 287 312 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF140-202 - 457 6.3e-82 266.7 63.6 7 11 2e-08 1.5e-05 25.2 5.1 1 25 315 339 315 340 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF140-202 - 457 6.3e-82 266.7 63.6 8 11 7.6e-09 5.9e-06 26.5 0.1 2 25 344 367 344 367 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF140-202 - 457 6.3e-82 266.7 63.6 9 11 9.2e-11 7.2e-08 32.5 0.3 2 25 372 395 371 396 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF140-202 - 457 6.3e-82 266.7 63.6 10 11 9.3e-11 7.2e-08 32.5 0.4 2 25 400 423 399 423 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF140-202 - 457 6.3e-82 266.7 63.6 11 11 0.0063 4.9 7.8 0.1 1 16 427 442 427 445 0.89 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZNF140-202 - 457 5.5e-52 171.4 82.9 1 12 1 7.9e+02 0.9 0.0 11 21 143 153 140 154 0.85 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF140-202 - 457 5.5e-52 171.4 82.9 2 12 2.2e-07 0.00017 21.8 1.9 3 23 163 183 161 183 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF140-202 - 457 5.5e-52 171.4 82.9 3 12 8.2e-09 6.4e-06 26.3 0.3 1 23 189 211 189 211 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF140-202 - 457 5.5e-52 171.4 82.9 4 12 2.4e-07 0.00019 21.7 3.0 1 23 217 239 217 239 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF140-202 - 457 5.5e-52 171.4 82.9 5 12 1.1e-10 8.7e-08 32.2 0.4 1 23 245 267 245 267 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF140-202 - 457 5.5e-52 171.4 82.9 6 12 1.9e-07 0.00014 22.1 0.2 1 23 273 295 273 295 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF140-202 - 457 5.5e-52 171.4 82.9 7 12 4.2e-07 0.00033 21.0 1.8 1 23 301 323 301 323 0.95 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF140-202 - 457 5.5e-52 171.4 82.9 8 12 0.00035 0.27 11.8 5.3 1 23 329 351 329 351 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF140-202 - 457 5.5e-52 171.4 82.9 9 12 1.6e-05 0.013 16.0 0.5 1 23 357 379 357 379 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF140-202 - 457 5.5e-52 171.4 82.9 10 12 7.7e-08 6e-05 23.3 0.4 1 23 385 407 385 407 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF140-202 - 457 5.5e-52 171.4 82.9 11 12 1.4e-08 1.1e-05 25.6 1.1 1 23 413 435 413 435 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF140-202 - 457 5.5e-52 171.4 82.9 12 12 6.8 5.3e+03 -1.8 0.5 9 20 446 457 445 457 0.90 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZNF140-202 - 457 1.6e-29 100.0 71.9 1 10 0.00039 0.31 12.0 1.5 2 23 162 183 161 184 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF140-202 - 457 1.6e-29 100.0 71.9 2 10 1.5e-05 0.012 16.4 0.3 1 23 189 211 189 212 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF140-202 - 457 1.6e-29 100.0 71.9 3 10 0.00013 0.1 13.5 2.2 1 23 217 239 217 240 0.90 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF140-202 - 457 1.6e-29 100.0 71.9 4 10 4.5e-06 0.0035 18.1 0.2 1 23 245 267 245 268 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF140-202 - 457 1.6e-29 100.0 71.9 5 10 2.8e-06 0.0022 18.7 0.2 1 23 273 295 273 296 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF140-202 - 457 1.6e-29 100.0 71.9 6 10 0.00018 0.14 13.1 1.4 1 23 301 323 301 324 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF140-202 - 457 1.6e-29 100.0 71.9 7 10 0.00079 0.61 11.1 3.7 1 23 329 351 329 352 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF140-202 - 457 1.6e-29 100.0 71.9 8 10 8.6e-05 0.067 14.1 0.8 1 23 357 379 357 380 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF140-202 - 457 1.6e-29 100.0 71.9 9 10 0.00037 0.29 12.1 0.4 1 23 385 407 385 408 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF140-202 - 457 1.6e-29 100.0 71.9 10 10 2e-05 0.015 16.0 1.2 1 23 413 435 413 436 0.92 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF140-202 - 457 1.8e-25 88.4 69.0 1 10 0.00097 0.76 9.9 1.3 2 24 161 183 161 186 0.80 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF140-202 - 457 1.8e-25 88.4 69.0 2 10 5.2e-05 0.04 13.9 0.4 2 20 189 207 189 211 0.91 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF140-202 - 457 1.8e-25 88.4 69.0 3 10 2.9e-06 0.0022 17.9 2.0 2 24 217 239 217 242 0.96 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF140-202 - 457 1.8e-25 88.4 69.0 4 10 3e-05 0.024 14.7 0.4 2 22 245 265 245 267 0.89 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF140-202 - 457 1.8e-25 88.4 69.0 5 10 5.6e-06 0.0044 17.0 0.3 2 24 273 295 272 298 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF140-202 - 457 1.8e-25 88.4 69.0 6 10 0.003 2.3 8.3 1.0 2 20 301 319 301 324 0.86 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF140-202 - 457 1.8e-25 88.4 69.0 7 10 0.037 29 4.8 2.2 2 12 329 339 329 349 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF140-202 - 457 1.8e-25 88.4 69.0 8 10 3.3e-07 0.00026 20.9 0.7 2 24 357 379 356 382 0.95 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF140-202 - 457 1.8e-25 88.4 69.0 9 10 0.00099 0.77 9.8 0.3 2 24 385 407 385 410 0.92 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF140-202 - 457 1.8e-25 88.4 69.0 10 10 2.5e-05 0.019 14.9 1.5 2 24 413 435 413 436 0.94 C2H2-type zinc finger KRAB PF01352.27 42 ZNF140-202 - 457 4e-25 87.2 0.1 1 1 9.4e-28 7.3e-25 86.3 0.1 1 42 5 46 5 46 0.99 KRAB box zf-C2H2_jaz PF12171.8 27 ZNF140-202 - 457 3.5e-11 43.1 55.1 1 11 4.5 3.5e+03 -1.5 0.1 12 22 143 153 140 153 0.83 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF140-202 - 457 3.5e-11 43.1 55.1 2 11 0.018 14 6.1 0.1 4 24 163 183 161 183 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF140-202 - 457 3.5e-11 43.1 55.1 3 11 0.0017 1.4 9.3 0.2 2 20 189 207 188 208 0.91 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF140-202 - 457 3.5e-11 43.1 55.1 4 11 0.0041 3.2 8.1 1.2 2 23 217 238 216 239 0.81 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF140-202 - 457 3.5e-11 43.1 55.1 5 11 0.00026 0.2 12.0 0.0 2 22 245 265 244 265 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF140-202 - 457 3.5e-11 43.1 55.1 6 11 0.18 1.4e+02 2.9 0.2 1 21 272 292 272 295 0.87 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF140-202 - 457 3.5e-11 43.1 55.1 7 11 0.042 32 4.9 0.1 2 20 301 319 300 321 0.75 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF140-202 - 457 3.5e-11 43.1 55.1 8 11 0.43 3.4e+02 1.7 2.6 2 21 329 348 328 349 0.85 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF140-202 - 457 3.5e-11 43.1 55.1 9 11 0.0024 1.8 8.9 0.6 2 24 357 379 356 379 0.96 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF140-202 - 457 3.5e-11 43.1 55.1 10 11 0.0012 0.93 9.9 0.1 2 24 385 407 384 407 0.91 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF140-202 - 457 3.5e-11 43.1 55.1 11 11 0.00019 0.15 12.4 0.9 2 24 413 435 412 435 0.92 Zinc-finger double-stranded RNA-binding Zn-ribbon_8 PF09723.10 40 ZNF140-202 - 457 1e-10 41.6 46.1 1 10 0.00014 0.11 12.7 3.8 6 36 161 198 160 201 0.82 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF140-202 - 457 1e-10 41.6 46.1 2 10 1e-05 0.0078 16.3 1.7 6 34 189 224 188 229 0.89 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF140-202 - 457 1e-10 41.6 46.1 3 10 0.00038 0.3 11.2 4.2 7 38 218 256 208 257 0.91 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF140-202 - 457 1e-10 41.6 46.1 4 10 2.2e-05 0.017 15.2 2.0 6 34 245 280 244 284 0.90 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF140-202 - 457 1e-10 41.6 46.1 5 10 3.2e-05 0.025 14.7 1.9 5 38 272 312 271 314 0.89 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF140-202 - 457 1e-10 41.6 46.1 6 10 0.012 9.3 6.5 6.8 6 35 301 337 300 341 0.87 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF140-202 - 457 1e-10 41.6 46.1 7 10 0.021 17 5.7 8.1 6 34 329 364 328 367 0.87 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF140-202 - 457 1e-10 41.6 46.1 8 10 8.4e-05 0.066 13.4 3.3 6 38 357 396 355 398 0.80 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF140-202 - 457 1e-10 41.6 46.1 9 10 0.0011 0.87 9.8 1.5 6 34 385 420 384 425 0.86 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF140-202 - 457 1e-10 41.6 46.1 10 10 0.15 1.2e+02 2.9 0.2 6 16 413 423 410 434 0.84 Zinc ribbon domain XPA_N PF01286.18 32 ZNF140-202 - 457 1.3e-07 31.5 40.7 1 10 0.036 28 4.9 0.1 4 12 163 171 161 174 0.90 XPA protein N-terminal XPA_N PF01286.18 32 ZNF140-202 - 457 1.3e-07 31.5 40.7 2 10 0.01 7.9 6.6 0.1 4 12 191 199 188 207 0.86 XPA protein N-terminal XPA_N PF01286.18 32 ZNF140-202 - 457 1.3e-07 31.5 40.7 3 10 0.011 8.8 6.5 0.3 3 16 218 232 216 235 0.73 XPA protein N-terminal XPA_N PF01286.18 32 ZNF140-202 - 457 1.3e-07 31.5 40.7 4 10 0.014 11 6.2 0.1 3 12 246 255 244 260 0.89 XPA protein N-terminal XPA_N PF01286.18 32 ZNF140-202 - 457 1.3e-07 31.5 40.7 5 10 0.043 34 4.6 0.1 3 12 274 283 272 286 0.88 XPA protein N-terminal XPA_N PF01286.18 32 ZNF140-202 - 457 1.3e-07 31.5 40.7 6 10 0.015 11 6.1 0.2 3 11 302 310 300 313 0.89 XPA protein N-terminal XPA_N PF01286.18 32 ZNF140-202 - 457 1.3e-07 31.5 40.7 7 10 0.025 19 5.4 0.6 3 18 330 346 328 348 0.83 XPA protein N-terminal XPA_N PF01286.18 32 ZNF140-202 - 457 1.3e-07 31.5 40.7 8 10 0.02 16 5.7 0.1 3 11 358 366 357 368 0.88 XPA protein N-terminal XPA_N PF01286.18 32 ZNF140-202 - 457 1.3e-07 31.5 40.7 9 10 0.0067 5.2 7.2 0.3 4 15 387 398 384 400 0.92 XPA protein N-terminal XPA_N PF01286.18 32 ZNF140-202 - 457 1.3e-07 31.5 40.7 10 10 0.34 2.6e+02 1.7 0.1 3 12 414 423 412 426 0.75 XPA protein N-terminal # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF140-202.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF140-202.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF140-202.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF140-202.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF140-202.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:00:09 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF140-203.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF140-203.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF140-203.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF140-203.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF140-203.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:00:09 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF140-204.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF140-204.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF140-204.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF140-204.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF140-204.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:00:09 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF140-205.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF140-205.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF140-205.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF140-205.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF140-205.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:00:10 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF140-206.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF140-206.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF140-206.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF140-206.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF140-206.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:00:10 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZNF140-207 - 329 8.5e-84 272.5 63.6 1 11 5.8e-06 0.0036 17.7 0.0 1 25 19 43 19 44 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF140-207 - 329 8.5e-84 272.5 63.6 2 11 1.2e-11 7.4e-09 35.6 0.5 1 25 47 71 47 72 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF140-207 - 329 8.5e-84 272.5 63.6 3 11 1.2e-10 7.4e-08 32.5 2.6 1 25 75 99 75 100 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF140-207 - 329 8.5e-84 272.5 63.6 4 11 1.4e-11 8.6e-09 35.4 0.5 4 25 106 127 104 128 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF140-207 - 329 8.5e-84 272.5 63.6 5 11 6.5e-09 4e-06 27.0 0.3 1 26 131 156 131 156 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF140-207 - 329 8.5e-84 272.5 63.6 6 11 1.5e-11 9.1e-09 35.4 0.2 2 25 160 183 159 184 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF140-207 - 329 8.5e-84 272.5 63.6 7 11 1.7e-08 1e-05 25.7 5.1 1 25 187 211 187 212 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF140-207 - 329 8.5e-84 272.5 63.6 8 11 6.4e-09 4e-06 27.0 0.1 2 25 216 239 216 239 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF140-207 - 329 8.5e-84 272.5 63.6 9 11 7.7e-11 4.7e-08 33.1 0.3 2 25 244 267 243 268 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF140-207 - 329 8.5e-84 272.5 63.6 10 11 7.8e-11 4.8e-08 33.1 0.4 2 25 272 295 271 295 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF140-207 - 329 8.5e-84 272.5 63.6 11 11 0.0053 3.3 8.3 0.1 1 16 299 314 299 317 0.89 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZNF140-207 - 329 7e-54 177.4 82.9 1 12 0.87 5.4e+02 1.4 0.0 11 21 15 25 12 26 0.85 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF140-207 - 329 7e-54 177.4 82.9 2 12 1.8e-07 0.00011 22.4 1.9 3 23 35 55 33 55 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF140-207 - 329 7e-54 177.4 82.9 3 12 6.9e-09 4.2e-06 26.9 0.3 1 23 61 83 61 83 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF140-207 - 329 7e-54 177.4 82.9 4 12 2e-07 0.00013 22.3 3.0 1 23 89 111 89 111 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF140-207 - 329 7e-54 177.4 82.9 5 12 9.4e-11 5.8e-08 32.8 0.4 1 23 117 139 117 139 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF140-207 - 329 7e-54 177.4 82.9 6 12 1.6e-07 9.6e-05 22.6 0.2 1 23 145 167 145 167 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF140-207 - 329 7e-54 177.4 82.9 7 12 3.5e-07 0.00022 21.5 1.8 1 23 173 195 173 195 0.95 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF140-207 - 329 7e-54 177.4 82.9 8 12 0.00029 0.18 12.3 5.3 1 23 201 223 201 223 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF140-207 - 329 7e-54 177.4 82.9 9 12 1.4e-05 0.0084 16.5 0.5 1 23 229 251 229 251 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF140-207 - 329 7e-54 177.4 82.9 10 12 6.5e-08 4e-05 23.8 0.4 1 23 257 279 257 279 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF140-207 - 329 7e-54 177.4 82.9 11 12 1.2e-08 7.1e-06 26.2 1.1 1 23 285 307 285 307 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF140-207 - 329 7e-54 177.4 82.9 12 12 5.9 3.7e+03 -1.2 0.5 9 20 318 329 317 329 0.90 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZNF140-207 - 329 2.6e-31 105.6 71.9 1 11 9.4 5.8e+03 -1.3 0.0 12 21 15 25 7 26 0.64 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF140-207 - 329 2.6e-31 105.6 71.9 2 11 0.00033 0.2 12.6 1.5 2 23 34 55 33 56 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF140-207 - 329 2.6e-31 105.6 71.9 3 11 1.2e-05 0.0077 17.0 0.3 1 23 61 83 61 84 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF140-207 - 329 2.6e-31 105.6 71.9 4 11 0.00011 0.067 14.1 2.2 1 23 89 111 89 112 0.90 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF140-207 - 329 2.6e-31 105.6 71.9 5 11 3.7e-06 0.0023 18.6 0.2 1 23 117 139 117 140 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF140-207 - 329 2.6e-31 105.6 71.9 6 11 2.3e-06 0.0014 19.3 0.2 1 23 145 167 145 168 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF140-207 - 329 2.6e-31 105.6 71.9 7 11 0.00015 0.091 13.6 1.4 1 23 173 195 173 196 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF140-207 - 329 2.6e-31 105.6 71.9 8 11 0.00066 0.41 11.6 3.7 1 23 201 223 201 224 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF140-207 - 329 2.6e-31 105.6 71.9 9 11 7.2e-05 0.044 14.6 0.8 1 23 229 251 229 252 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF140-207 - 329 2.6e-31 105.6 71.9 10 11 0.00031 0.19 12.6 0.4 1 23 257 279 257 280 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF140-207 - 329 2.6e-31 105.6 71.9 11 11 1.7e-05 0.01 16.6 1.2 1 23 285 307 285 308 0.92 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF140-207 - 329 2.2e-27 94.5 68.3 1 10 0.00083 0.51 10.4 1.3 2 24 33 55 33 58 0.80 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF140-207 - 329 2.2e-27 94.5 68.3 2 10 4.4e-05 0.027 14.5 0.4 2 20 61 79 61 83 0.91 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF140-207 - 329 2.2e-27 94.5 68.3 3 10 2.4e-06 0.0015 18.5 2.0 2 24 89 111 89 114 0.96 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF140-207 - 329 2.2e-27 94.5 68.3 4 10 2.6e-05 0.016 15.2 0.4 2 22 117 137 117 139 0.89 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF140-207 - 329 2.2e-27 94.5 68.3 5 10 4.7e-06 0.0029 17.6 0.3 2 24 145 167 144 170 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF140-207 - 329 2.2e-27 94.5 68.3 6 10 0.0025 1.6 8.9 1.0 2 20 173 191 173 196 0.86 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF140-207 - 329 2.2e-27 94.5 68.3 7 10 0.021 13 5.9 1.7 2 12 201 211 201 222 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF140-207 - 329 2.2e-27 94.5 68.3 8 10 2.7e-07 0.00017 21.5 0.7 2 24 229 251 228 254 0.95 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF140-207 - 329 2.2e-27 94.5 68.3 9 10 0.00083 0.51 10.4 0.3 2 24 257 279 257 282 0.92 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF140-207 - 329 2.2e-27 94.5 68.3 10 10 2.1e-05 0.013 15.5 1.5 2 24 285 307 285 308 0.94 C2H2-type zinc finger zf-C2H2_jaz PF12171.8 27 ZNF140-207 - 329 2.7e-13 49.8 53.9 1 11 3.3 2.1e+03 -0.8 0.1 11 22 14 25 11 25 0.82 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF140-207 - 329 2.7e-13 49.8 53.9 2 11 0.013 8 6.9 0.0 4 24 35 55 32 55 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF140-207 - 329 2.7e-13 49.8 53.9 3 11 0.0015 0.92 9.9 0.2 2 20 61 79 60 80 0.91 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF140-207 - 329 2.7e-13 49.8 53.9 4 11 0.0035 2.2 8.7 1.2 2 23 89 110 88 111 0.81 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF140-207 - 329 2.7e-13 49.8 53.9 5 11 0.00022 0.14 12.5 0.0 2 22 117 137 116 137 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF140-207 - 329 2.7e-13 49.8 53.9 6 11 0.15 92 3.5 0.2 1 21 144 164 144 167 0.88 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF140-207 - 329 2.7e-13 49.8 53.9 7 11 0.035 22 5.5 0.1 2 20 173 191 172 193 0.75 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF140-207 - 329 2.7e-13 49.8 53.9 8 11 0.37 2.3e+02 2.3 2.6 2 21 201 220 200 221 0.85 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF140-207 - 329 2.7e-13 49.8 53.9 9 11 0.002 1.2 9.5 0.6 2 24 229 251 228 251 0.96 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF140-207 - 329 2.7e-13 49.8 53.9 10 11 0.001 0.62 10.4 0.1 2 24 257 279 256 279 0.91 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF140-207 - 329 2.7e-13 49.8 53.9 11 11 0.00016 0.1 12.9 1.0 2 24 285 307 284 307 0.92 Zinc-finger double-stranded RNA-binding Zn-ribbon_8 PF09723.10 40 ZNF140-207 - 329 1.5e-11 44.2 47.1 1 10 0.00014 0.086 13.0 4.1 6 36 33 70 32 73 0.82 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF140-207 - 329 1.5e-11 44.2 47.1 2 10 1.1e-05 0.0071 16.4 2.2 6 34 61 96 60 100 0.89 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF140-207 - 329 1.5e-11 44.2 47.1 3 10 0.00055 0.34 11.1 5.0 7 38 90 128 88 130 0.90 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF140-207 - 329 1.5e-11 44.2 47.1 4 10 2.4e-05 0.015 15.4 2.4 6 34 117 152 116 155 0.90 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF140-207 - 329 1.5e-11 44.2 47.1 5 10 2.5e-05 0.016 15.3 1.9 5 38 144 184 143 186 0.89 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF140-207 - 329 1.5e-11 44.2 47.1 6 10 0.0034 2.1 8.5 5.2 6 35 173 209 172 211 0.86 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF140-207 - 329 1.5e-11 44.2 47.1 7 10 0.041 25 5.1 8.8 6 34 201 236 200 236 0.89 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF140-207 - 329 1.5e-11 44.2 47.1 8 10 7.3e-05 0.045 13.9 3.4 6 38 229 268 228 270 0.80 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF140-207 - 329 1.5e-11 44.2 47.1 9 10 0.00087 0.54 10.4 1.5 6 34 257 292 256 296 0.86 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF140-207 - 329 1.5e-11 44.2 47.1 10 10 0.14 84 3.4 0.1 6 16 285 295 283 305 0.85 Zinc ribbon domain XPA_N PF01286.18 32 ZNF140-207 - 329 4.2e-09 36.3 40.7 1 10 0.031 19 5.4 0.1 4 12 35 43 33 46 0.90 XPA protein N-terminal XPA_N PF01286.18 32 ZNF140-207 - 329 4.2e-09 36.3 40.7 2 10 0.0087 5.4 7.2 0.1 4 12 63 71 60 79 0.86 XPA protein N-terminal XPA_N PF01286.18 32 ZNF140-207 - 329 4.2e-09 36.3 40.7 3 10 0.0097 6 7.0 0.3 3 16 90 104 88 107 0.73 XPA protein N-terminal XPA_N PF01286.18 32 ZNF140-207 - 329 4.2e-09 36.3 40.7 4 10 0.012 7.6 6.7 0.1 3 12 118 127 116 132 0.89 XPA protein N-terminal XPA_N PF01286.18 32 ZNF140-207 - 329 4.2e-09 36.3 40.7 5 10 0.037 23 5.1 0.1 3 12 146 155 144 158 0.88 XPA protein N-terminal XPA_N PF01286.18 32 ZNF140-207 - 329 4.2e-09 36.3 40.7 6 10 0.013 7.8 6.6 0.2 3 11 174 182 172 185 0.89 XPA protein N-terminal XPA_N PF01286.18 32 ZNF140-207 - 329 4.2e-09 36.3 40.7 7 10 0.021 13 5.9 0.6 3 18 202 218 200 220 0.83 XPA protein N-terminal XPA_N PF01286.18 32 ZNF140-207 - 329 4.2e-09 36.3 40.7 8 10 0.018 11 6.2 0.1 3 11 230 238 229 240 0.88 XPA protein N-terminal XPA_N PF01286.18 32 ZNF140-207 - 329 4.2e-09 36.3 40.7 9 10 0.0058 3.6 7.7 0.3 4 15 259 270 256 272 0.92 XPA protein N-terminal XPA_N PF01286.18 32 ZNF140-207 - 329 4.2e-09 36.3 40.7 10 10 0.29 1.8e+02 2.3 0.1 3 12 286 295 284 298 0.75 XPA protein N-terminal zf_UBZ PF18439.1 32 ZNF140-207 - 329 2.9e-08 33.2 38.2 1 10 0.23 1.4e+02 2.2 0.1 3 12 33 42 32 44 0.86 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF140-207 - 329 2.9e-08 33.2 38.2 2 10 0.0035 2.2 8.0 0.1 3 14 61 72 59 80 0.84 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF140-207 - 329 2.9e-08 33.2 38.2 3 10 0.029 18 5.0 0.2 4 13 90 99 87 108 0.76 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF140-207 - 329 2.9e-08 33.2 38.2 4 10 0.006 3.7 7.2 0.1 3 20 117 135 115 136 0.79 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF140-207 - 329 2.9e-08 33.2 38.2 5 10 0.002 1.2 8.8 0.1 2 20 144 163 143 164 0.82 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF140-207 - 329 2.9e-08 33.2 38.2 6 10 0.24 1.5e+02 2.1 0.1 3 12 173 182 171 192 0.82 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF140-207 - 329 2.9e-08 33.2 38.2 7 10 0.22 1.3e+02 2.2 0.6 3 15 201 213 199 217 0.82 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF140-207 - 329 2.9e-08 33.2 38.2 8 10 0.0029 1.8 8.2 0.1 3 15 229 241 227 248 0.75 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF140-207 - 329 2.9e-08 33.2 38.2 9 10 0.014 8.9 6.0 0.1 3 15 257 269 255 276 0.82 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF140-207 - 329 2.9e-08 33.2 38.2 10 10 0.019 12 5.6 0.1 3 18 285 301 283 304 0.76 Ubiquitin-Binding Zinc Finger zinc_ribbon_15 PF17032.5 86 ZNF140-207 - 329 6.8e-07 29.9 36.8 1 6 0.59 3.7e+02 2.0 0.1 57 77 24 44 4 51 0.57 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF140-207 - 329 6.8e-07 29.9 36.8 2 6 0.016 9.8 7.0 5.7 32 74 55 97 22 102 0.70 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF140-207 - 329 6.8e-07 29.9 36.8 3 6 0.0015 0.92 10.3 5.8 17 77 97 156 90 160 0.81 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF140-207 - 329 6.8e-07 29.9 36.8 4 6 0.064 39 5.1 2.6 36 74 171 209 160 212 0.83 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF140-207 - 329 6.8e-07 29.9 36.8 5 6 3.8e-06 0.0023 18.6 1.1 21 79 212 270 208 275 0.93 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF140-207 - 329 6.8e-07 29.9 36.8 6 6 0.39 2.4e+02 2.6 0.1 33 57 280 304 269 315 0.71 zinc-ribbon family # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF140-207.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF140-207.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF140-207.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF140-207.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF140-207.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:00:11 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF140-208.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF140-208.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF140-208.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF140-208.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF140-208.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:00:11 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZNF140-209 - 354 2e-83 271.4 63.6 1 11 5.9e-06 0.0039 17.6 0.0 1 25 44 68 44 69 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF140-209 - 354 2e-83 271.4 63.6 2 11 1.2e-11 8.1e-09 35.5 0.5 1 25 72 96 72 97 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF140-209 - 354 2e-83 271.4 63.6 3 11 1.2e-10 8.1e-08 32.4 2.6 1 25 100 124 100 125 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF140-209 - 354 2e-83 271.4 63.6 4 11 1.4e-11 9.4e-09 35.3 0.5 4 25 131 152 129 153 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF140-209 - 354 2e-83 271.4 63.6 5 11 6.7e-09 4.4e-06 26.9 0.3 1 26 156 181 156 181 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF140-209 - 354 2e-83 271.4 63.6 6 11 1.5e-11 9.9e-09 35.2 0.2 2 25 185 208 184 209 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF140-209 - 354 2e-83 271.4 63.6 7 11 1.7e-08 1.1e-05 25.6 5.1 1 25 212 236 212 237 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF140-209 - 354 2e-83 271.4 63.6 8 11 6.5e-09 4.3e-06 26.9 0.1 2 25 241 264 241 264 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF140-209 - 354 2e-83 271.4 63.6 9 11 7.8e-11 5.2e-08 33.0 0.3 2 25 269 292 268 293 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF140-209 - 354 2e-83 271.4 63.6 10 11 8e-11 5.3e-08 32.9 0.4 2 25 297 320 296 320 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF140-209 - 354 2e-83 271.4 63.6 11 11 0.0054 3.6 8.2 0.1 1 16 324 339 324 342 0.89 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZNF140-209 - 354 1.8e-53 176.1 82.9 1 12 0.89 5.9e+02 1.3 0.0 11 21 40 50 37 51 0.85 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF140-209 - 354 1.8e-53 176.1 82.9 2 12 1.9e-07 0.00012 22.3 1.9 3 23 60 80 58 80 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF140-209 - 354 1.8e-53 176.1 82.9 3 12 7e-09 4.6e-06 26.8 0.3 1 23 86 108 86 108 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF140-209 - 354 1.8e-53 176.1 82.9 4 12 2.1e-07 0.00014 22.1 3.0 1 23 114 136 114 136 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF140-209 - 354 1.8e-53 176.1 82.9 5 12 9.6e-11 6.4e-08 32.6 0.4 1 23 142 164 142 164 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF140-209 - 354 1.8e-53 176.1 82.9 6 12 1.6e-07 0.00011 22.5 0.2 1 23 170 192 170 192 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF140-209 - 354 1.8e-53 176.1 82.9 7 12 3.6e-07 0.00024 21.4 1.8 1 23 198 220 198 220 0.95 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF140-209 - 354 1.8e-53 176.1 82.9 8 12 0.0003 0.2 12.2 5.3 1 23 226 248 226 248 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF140-209 - 354 1.8e-53 176.1 82.9 9 12 1.4e-05 0.0092 16.4 0.5 1 23 254 276 254 276 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF140-209 - 354 1.8e-53 176.1 82.9 10 12 6.6e-08 4.4e-05 23.7 0.4 1 23 282 304 282 304 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF140-209 - 354 1.8e-53 176.1 82.9 11 12 1.2e-08 7.8e-06 26.1 1.1 1 23 310 332 310 332 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF140-209 - 354 1.8e-53 176.1 82.9 12 12 6 4e+03 -1.4 0.5 9 20 343 354 342 354 0.90 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZNF140-209 - 354 6e-31 104.5 71.9 1 11 9.6 6.4e+03 -1.4 0.0 12 21 40 50 32 51 0.64 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF140-209 - 354 6e-31 104.5 71.9 2 11 0.00033 0.22 12.4 1.5 2 23 59 80 58 81 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF140-209 - 354 6e-31 104.5 71.9 3 11 1.3e-05 0.0084 16.9 0.3 1 23 86 108 86 109 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF140-209 - 354 6e-31 104.5 71.9 4 11 0.00011 0.074 13.9 2.2 1 23 114 136 114 137 0.90 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF140-209 - 354 6e-31 104.5 71.9 5 11 3.8e-06 0.0025 18.5 0.2 1 23 142 164 142 165 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF140-209 - 354 6e-31 104.5 71.9 6 11 2.4e-06 0.0016 19.1 0.2 1 23 170 192 170 193 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF140-209 - 354 6e-31 104.5 71.9 7 11 0.00015 0.1 13.5 1.4 1 23 198 220 198 221 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF140-209 - 354 6e-31 104.5 71.9 8 11 0.00067 0.45 11.5 3.7 1 23 226 248 226 249 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF140-209 - 354 6e-31 104.5 71.9 9 11 7.4e-05 0.049 14.5 0.8 1 23 254 276 254 277 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF140-209 - 354 6e-31 104.5 71.9 10 11 0.00032 0.21 12.5 0.4 1 23 282 304 282 305 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF140-209 - 354 6e-31 104.5 71.9 11 11 1.7e-05 0.011 16.5 1.2 1 23 310 332 310 333 0.92 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF140-209 - 354 5.1e-27 93.3 68.3 1 10 0.00084 0.56 10.3 1.3 2 24 58 80 58 83 0.80 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF140-209 - 354 5.1e-27 93.3 68.3 2 10 4.5e-05 0.03 14.3 0.4 2 20 86 104 86 108 0.91 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF140-209 - 354 5.1e-27 93.3 68.3 3 10 2.4e-06 0.0016 18.4 2.0 2 24 114 136 114 139 0.96 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF140-209 - 354 5.1e-27 93.3 68.3 4 10 2.6e-05 0.017 15.1 0.4 2 22 142 162 142 164 0.89 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF140-209 - 354 5.1e-27 93.3 68.3 5 10 4.8e-06 0.0032 17.4 0.3 2 24 170 192 169 195 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF140-209 - 354 5.1e-27 93.3 68.3 6 10 0.0026 1.7 8.7 1.0 2 20 198 216 198 221 0.86 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF140-209 - 354 5.1e-27 93.3 68.3 7 10 0.022 14 5.8 1.7 2 12 226 236 226 247 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF140-209 - 354 5.1e-27 93.3 68.3 8 10 2.8e-07 0.00019 21.4 0.7 2 24 254 276 253 279 0.95 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF140-209 - 354 5.1e-27 93.3 68.3 9 10 0.00085 0.56 10.3 0.3 2 24 282 304 282 307 0.92 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF140-209 - 354 5.1e-27 93.3 68.3 10 10 2.1e-05 0.014 15.4 1.5 2 24 310 332 310 333 0.94 C2H2-type zinc finger zf-C2H2_jaz PF12171.8 27 ZNF140-209 - 354 5.3e-13 48.9 53.6 1 11 4 2.6e+03 -1.1 0.1 12 22 40 50 37 50 0.83 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF140-209 - 354 5.3e-13 48.9 53.6 2 11 0.013 8.7 6.8 0.0 4 24 60 80 57 80 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF140-209 - 354 5.3e-13 48.9 53.6 3 11 0.0015 1 9.8 0.2 2 20 86 104 85 105 0.91 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF140-209 - 354 5.3e-13 48.9 53.6 4 11 0.0036 2.4 8.6 1.2 2 23 114 135 113 136 0.81 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF140-209 - 354 5.3e-13 48.9 53.6 5 11 0.00023 0.15 12.4 0.0 2 22 142 162 141 162 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF140-209 - 354 5.3e-13 48.9 53.6 6 11 0.15 1e+02 3.4 0.2 1 21 169 189 169 192 0.88 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF140-209 - 354 5.3e-13 48.9 53.6 7 11 0.036 24 5.4 0.1 2 20 198 216 197 218 0.75 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF140-209 - 354 5.3e-13 48.9 53.6 8 11 0.37 2.5e+02 2.1 2.6 2 21 226 245 225 246 0.85 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF140-209 - 354 5.3e-13 48.9 53.6 9 11 0.002 1.4 9.3 0.6 2 24 254 276 253 276 0.96 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF140-209 - 354 5.3e-13 48.9 53.6 10 11 0.001 0.68 10.3 0.1 2 24 282 304 281 304 0.91 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF140-209 - 354 5.3e-13 48.9 53.6 11 11 0.00017 0.11 12.8 0.9 2 24 310 332 309 332 0.92 Zinc-finger double-stranded RNA-binding Zn-ribbon_8 PF09723.10 40 ZNF140-209 - 354 1.5e-11 44.2 46.4 1 10 0.00013 0.083 13.0 4.0 6 36 58 95 57 99 0.82 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF140-209 - 354 1.5e-11 44.2 46.4 2 10 8.6e-06 0.0057 16.7 1.8 6 34 86 121 85 126 0.89 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF140-209 - 354 1.5e-11 44.2 46.4 3 10 0.00057 0.38 10.9 4.9 7 38 115 153 113 154 0.90 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF140-209 - 354 1.5e-11 44.2 46.4 4 10 1.7e-05 0.012 15.8 2.0 6 34 142 177 141 181 0.90 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF140-209 - 354 1.5e-11 44.2 46.4 5 10 2.8e-05 0.018 15.1 2.0 5 38 169 209 168 211 0.89 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF140-209 - 354 1.5e-11 44.2 46.4 6 10 0.011 7 6.9 6.9 6 35 198 234 197 238 0.87 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF140-209 - 354 1.5e-11 44.2 46.4 7 10 0.017 11 6.2 8.0 6 34 226 261 225 264 0.87 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF140-209 - 354 1.5e-11 44.2 46.4 8 10 6.2e-05 0.041 14.0 3.1 6 38 254 293 252 295 0.80 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF140-209 - 354 1.5e-11 44.2 46.4 9 10 0.0012 0.77 9.9 1.8 6 34 282 317 280 320 0.86 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF140-209 - 354 1.5e-11 44.2 46.4 10 10 0.13 88 3.3 0.1 6 16 310 320 308 331 0.84 Zinc ribbon domain XPA_N PF01286.18 32 ZNF140-209 - 354 7.7e-09 35.4 40.7 1 10 0.031 21 5.3 0.1 4 12 60 68 58 71 0.90 XPA protein N-terminal XPA_N PF01286.18 32 ZNF140-209 - 354 7.7e-09 35.4 40.7 2 10 0.0088 5.9 7.0 0.1 4 12 88 96 85 104 0.86 XPA protein N-terminal XPA_N PF01286.18 32 ZNF140-209 - 354 7.7e-09 35.4 40.7 3 10 0.0099 6.6 6.9 0.3 3 16 115 129 113 132 0.73 XPA protein N-terminal XPA_N PF01286.18 32 ZNF140-209 - 354 7.7e-09 35.4 40.7 4 10 0.012 8.2 6.6 0.1 3 12 143 152 141 157 0.89 XPA protein N-terminal XPA_N PF01286.18 32 ZNF140-209 - 354 7.7e-09 35.4 40.7 5 10 0.038 25 5.0 0.1 3 12 171 180 169 183 0.88 XPA protein N-terminal XPA_N PF01286.18 32 ZNF140-209 - 354 7.7e-09 35.4 40.7 6 10 0.013 8.5 6.5 0.2 3 11 199 207 197 210 0.89 XPA protein N-terminal XPA_N PF01286.18 32 ZNF140-209 - 354 7.7e-09 35.4 40.7 7 10 0.022 14 5.8 0.6 3 18 227 243 225 245 0.83 XPA protein N-terminal XPA_N PF01286.18 32 ZNF140-209 - 354 7.7e-09 35.4 40.7 8 10 0.018 12 6.1 0.1 3 11 255 263 254 265 0.88 XPA protein N-terminal XPA_N PF01286.18 32 ZNF140-209 - 354 7.7e-09 35.4 40.7 9 10 0.0059 3.9 7.6 0.3 4 15 284 295 281 297 0.92 XPA protein N-terminal XPA_N PF01286.18 32 ZNF140-209 - 354 7.7e-09 35.4 40.7 10 10 0.3 2e+02 2.1 0.1 3 12 311 320 309 323 0.75 XPA protein N-terminal zf_UBZ PF18439.1 32 ZNF140-209 - 354 6.3e-08 32.1 38.2 1 10 0.23 1.5e+02 2.1 0.1 3 12 58 67 57 69 0.86 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF140-209 - 354 6.3e-08 32.1 38.2 2 10 0.0036 2.4 7.8 0.1 3 14 86 97 84 105 0.84 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF140-209 - 354 6.3e-08 32.1 38.2 3 10 0.03 20 4.9 0.2 4 13 115 124 112 133 0.76 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF140-209 - 354 6.3e-08 32.1 38.2 4 10 0.0061 4.1 7.1 0.1 3 20 142 160 140 161 0.79 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF140-209 - 354 6.3e-08 32.1 38.2 5 10 0.002 1.3 8.6 0.1 2 20 169 188 168 189 0.81 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF140-209 - 354 6.3e-08 32.1 38.2 6 10 0.25 1.6e+02 2.0 0.1 3 12 198 207 196 217 0.82 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF140-209 - 354 6.3e-08 32.1 38.2 7 10 0.22 1.5e+02 2.1 0.6 3 15 226 238 224 242 0.82 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF140-209 - 354 6.3e-08 32.1 38.2 8 10 0.0029 1.9 8.1 0.1 3 15 254 266 252 273 0.75 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF140-209 - 354 6.3e-08 32.1 38.2 9 10 0.015 9.7 5.9 0.1 3 15 282 294 280 301 0.82 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF140-209 - 354 6.3e-08 32.1 38.2 10 10 0.019 13 5.5 0.1 3 18 310 326 308 329 0.76 Ubiquitin-Binding Zinc Finger # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF140-209.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF140-209.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF140-209.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF140-209.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF140-209.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:00:11 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZNF140-210 - 354 2e-83 271.4 63.6 1 11 5.9e-06 0.0039 17.6 0.0 1 25 44 68 44 69 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF140-210 - 354 2e-83 271.4 63.6 2 11 1.2e-11 8.1e-09 35.5 0.5 1 25 72 96 72 97 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF140-210 - 354 2e-83 271.4 63.6 3 11 1.2e-10 8.1e-08 32.4 2.6 1 25 100 124 100 125 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF140-210 - 354 2e-83 271.4 63.6 4 11 1.4e-11 9.4e-09 35.3 0.5 4 25 131 152 129 153 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF140-210 - 354 2e-83 271.4 63.6 5 11 6.7e-09 4.4e-06 26.9 0.3 1 26 156 181 156 181 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF140-210 - 354 2e-83 271.4 63.6 6 11 1.5e-11 9.9e-09 35.2 0.2 2 25 185 208 184 209 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF140-210 - 354 2e-83 271.4 63.6 7 11 1.7e-08 1.1e-05 25.6 5.1 1 25 212 236 212 237 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF140-210 - 354 2e-83 271.4 63.6 8 11 6.5e-09 4.3e-06 26.9 0.1 2 25 241 264 241 264 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF140-210 - 354 2e-83 271.4 63.6 9 11 7.8e-11 5.2e-08 33.0 0.3 2 25 269 292 268 293 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF140-210 - 354 2e-83 271.4 63.6 10 11 8e-11 5.3e-08 32.9 0.4 2 25 297 320 296 320 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF140-210 - 354 2e-83 271.4 63.6 11 11 0.0054 3.6 8.2 0.1 1 16 324 339 324 342 0.89 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZNF140-210 - 354 1.8e-53 176.1 82.9 1 12 0.89 5.9e+02 1.3 0.0 11 21 40 50 37 51 0.85 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF140-210 - 354 1.8e-53 176.1 82.9 2 12 1.9e-07 0.00012 22.3 1.9 3 23 60 80 58 80 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF140-210 - 354 1.8e-53 176.1 82.9 3 12 7e-09 4.6e-06 26.8 0.3 1 23 86 108 86 108 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF140-210 - 354 1.8e-53 176.1 82.9 4 12 2.1e-07 0.00014 22.1 3.0 1 23 114 136 114 136 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF140-210 - 354 1.8e-53 176.1 82.9 5 12 9.6e-11 6.4e-08 32.6 0.4 1 23 142 164 142 164 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF140-210 - 354 1.8e-53 176.1 82.9 6 12 1.6e-07 0.00011 22.5 0.2 1 23 170 192 170 192 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF140-210 - 354 1.8e-53 176.1 82.9 7 12 3.6e-07 0.00024 21.4 1.8 1 23 198 220 198 220 0.95 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF140-210 - 354 1.8e-53 176.1 82.9 8 12 0.0003 0.2 12.2 5.3 1 23 226 248 226 248 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF140-210 - 354 1.8e-53 176.1 82.9 9 12 1.4e-05 0.0092 16.4 0.5 1 23 254 276 254 276 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF140-210 - 354 1.8e-53 176.1 82.9 10 12 6.6e-08 4.4e-05 23.7 0.4 1 23 282 304 282 304 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF140-210 - 354 1.8e-53 176.1 82.9 11 12 1.2e-08 7.8e-06 26.1 1.1 1 23 310 332 310 332 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF140-210 - 354 1.8e-53 176.1 82.9 12 12 6 4e+03 -1.4 0.5 9 20 343 354 342 354 0.90 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZNF140-210 - 354 6e-31 104.5 71.9 1 11 9.6 6.4e+03 -1.4 0.0 12 21 40 50 32 51 0.64 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF140-210 - 354 6e-31 104.5 71.9 2 11 0.00033 0.22 12.4 1.5 2 23 59 80 58 81 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF140-210 - 354 6e-31 104.5 71.9 3 11 1.3e-05 0.0084 16.9 0.3 1 23 86 108 86 109 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF140-210 - 354 6e-31 104.5 71.9 4 11 0.00011 0.074 13.9 2.2 1 23 114 136 114 137 0.90 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF140-210 - 354 6e-31 104.5 71.9 5 11 3.8e-06 0.0025 18.5 0.2 1 23 142 164 142 165 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF140-210 - 354 6e-31 104.5 71.9 6 11 2.4e-06 0.0016 19.1 0.2 1 23 170 192 170 193 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF140-210 - 354 6e-31 104.5 71.9 7 11 0.00015 0.1 13.5 1.4 1 23 198 220 198 221 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF140-210 - 354 6e-31 104.5 71.9 8 11 0.00067 0.45 11.5 3.7 1 23 226 248 226 249 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF140-210 - 354 6e-31 104.5 71.9 9 11 7.4e-05 0.049 14.5 0.8 1 23 254 276 254 277 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF140-210 - 354 6e-31 104.5 71.9 10 11 0.00032 0.21 12.5 0.4 1 23 282 304 282 305 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF140-210 - 354 6e-31 104.5 71.9 11 11 1.7e-05 0.011 16.5 1.2 1 23 310 332 310 333 0.92 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF140-210 - 354 5.1e-27 93.3 68.3 1 10 0.00084 0.56 10.3 1.3 2 24 58 80 58 83 0.80 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF140-210 - 354 5.1e-27 93.3 68.3 2 10 4.5e-05 0.03 14.3 0.4 2 20 86 104 86 108 0.91 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF140-210 - 354 5.1e-27 93.3 68.3 3 10 2.4e-06 0.0016 18.4 2.0 2 24 114 136 114 139 0.96 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF140-210 - 354 5.1e-27 93.3 68.3 4 10 2.6e-05 0.017 15.1 0.4 2 22 142 162 142 164 0.89 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF140-210 - 354 5.1e-27 93.3 68.3 5 10 4.8e-06 0.0032 17.4 0.3 2 24 170 192 169 195 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF140-210 - 354 5.1e-27 93.3 68.3 6 10 0.0026 1.7 8.7 1.0 2 20 198 216 198 221 0.86 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF140-210 - 354 5.1e-27 93.3 68.3 7 10 0.022 14 5.8 1.7 2 12 226 236 226 247 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF140-210 - 354 5.1e-27 93.3 68.3 8 10 2.8e-07 0.00019 21.4 0.7 2 24 254 276 253 279 0.95 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF140-210 - 354 5.1e-27 93.3 68.3 9 10 0.00085 0.56 10.3 0.3 2 24 282 304 282 307 0.92 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF140-210 - 354 5.1e-27 93.3 68.3 10 10 2.1e-05 0.014 15.4 1.5 2 24 310 332 310 333 0.94 C2H2-type zinc finger zf-C2H2_jaz PF12171.8 27 ZNF140-210 - 354 5.3e-13 48.9 53.6 1 11 4 2.6e+03 -1.1 0.1 12 22 40 50 37 50 0.83 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF140-210 - 354 5.3e-13 48.9 53.6 2 11 0.013 8.7 6.8 0.0 4 24 60 80 57 80 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF140-210 - 354 5.3e-13 48.9 53.6 3 11 0.0015 1 9.8 0.2 2 20 86 104 85 105 0.91 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF140-210 - 354 5.3e-13 48.9 53.6 4 11 0.0036 2.4 8.6 1.2 2 23 114 135 113 136 0.81 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF140-210 - 354 5.3e-13 48.9 53.6 5 11 0.00023 0.15 12.4 0.0 2 22 142 162 141 162 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF140-210 - 354 5.3e-13 48.9 53.6 6 11 0.15 1e+02 3.4 0.2 1 21 169 189 169 192 0.88 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF140-210 - 354 5.3e-13 48.9 53.6 7 11 0.036 24 5.4 0.1 2 20 198 216 197 218 0.75 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF140-210 - 354 5.3e-13 48.9 53.6 8 11 0.37 2.5e+02 2.1 2.6 2 21 226 245 225 246 0.85 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF140-210 - 354 5.3e-13 48.9 53.6 9 11 0.002 1.4 9.3 0.6 2 24 254 276 253 276 0.96 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF140-210 - 354 5.3e-13 48.9 53.6 10 11 0.001 0.68 10.3 0.1 2 24 282 304 281 304 0.91 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF140-210 - 354 5.3e-13 48.9 53.6 11 11 0.00017 0.11 12.8 0.9 2 24 310 332 309 332 0.92 Zinc-finger double-stranded RNA-binding Zn-ribbon_8 PF09723.10 40 ZNF140-210 - 354 1.5e-11 44.2 46.4 1 10 0.00013 0.083 13.0 4.0 6 36 58 95 57 99 0.82 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF140-210 - 354 1.5e-11 44.2 46.4 2 10 8.6e-06 0.0057 16.7 1.8 6 34 86 121 85 126 0.89 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF140-210 - 354 1.5e-11 44.2 46.4 3 10 0.00057 0.38 10.9 4.9 7 38 115 153 113 154 0.90 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF140-210 - 354 1.5e-11 44.2 46.4 4 10 1.7e-05 0.012 15.8 2.0 6 34 142 177 141 181 0.90 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF140-210 - 354 1.5e-11 44.2 46.4 5 10 2.8e-05 0.018 15.1 2.0 5 38 169 209 168 211 0.89 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF140-210 - 354 1.5e-11 44.2 46.4 6 10 0.011 7 6.9 6.9 6 35 198 234 197 238 0.87 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF140-210 - 354 1.5e-11 44.2 46.4 7 10 0.017 11 6.2 8.0 6 34 226 261 225 264 0.87 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF140-210 - 354 1.5e-11 44.2 46.4 8 10 6.2e-05 0.041 14.0 3.1 6 38 254 293 252 295 0.80 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF140-210 - 354 1.5e-11 44.2 46.4 9 10 0.0012 0.77 9.9 1.8 6 34 282 317 280 320 0.86 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF140-210 - 354 1.5e-11 44.2 46.4 10 10 0.13 88 3.3 0.1 6 16 310 320 308 331 0.84 Zinc ribbon domain XPA_N PF01286.18 32 ZNF140-210 - 354 7.7e-09 35.4 40.7 1 10 0.031 21 5.3 0.1 4 12 60 68 58 71 0.90 XPA protein N-terminal XPA_N PF01286.18 32 ZNF140-210 - 354 7.7e-09 35.4 40.7 2 10 0.0088 5.9 7.0 0.1 4 12 88 96 85 104 0.86 XPA protein N-terminal XPA_N PF01286.18 32 ZNF140-210 - 354 7.7e-09 35.4 40.7 3 10 0.0099 6.6 6.9 0.3 3 16 115 129 113 132 0.73 XPA protein N-terminal XPA_N PF01286.18 32 ZNF140-210 - 354 7.7e-09 35.4 40.7 4 10 0.012 8.2 6.6 0.1 3 12 143 152 141 157 0.89 XPA protein N-terminal XPA_N PF01286.18 32 ZNF140-210 - 354 7.7e-09 35.4 40.7 5 10 0.038 25 5.0 0.1 3 12 171 180 169 183 0.88 XPA protein N-terminal XPA_N PF01286.18 32 ZNF140-210 - 354 7.7e-09 35.4 40.7 6 10 0.013 8.5 6.5 0.2 3 11 199 207 197 210 0.89 XPA protein N-terminal XPA_N PF01286.18 32 ZNF140-210 - 354 7.7e-09 35.4 40.7 7 10 0.022 14 5.8 0.6 3 18 227 243 225 245 0.83 XPA protein N-terminal XPA_N PF01286.18 32 ZNF140-210 - 354 7.7e-09 35.4 40.7 8 10 0.018 12 6.1 0.1 3 11 255 263 254 265 0.88 XPA protein N-terminal XPA_N PF01286.18 32 ZNF140-210 - 354 7.7e-09 35.4 40.7 9 10 0.0059 3.9 7.6 0.3 4 15 284 295 281 297 0.92 XPA protein N-terminal XPA_N PF01286.18 32 ZNF140-210 - 354 7.7e-09 35.4 40.7 10 10 0.3 2e+02 2.1 0.1 3 12 311 320 309 323 0.75 XPA protein N-terminal zf_UBZ PF18439.1 32 ZNF140-210 - 354 6.3e-08 32.1 38.2 1 10 0.23 1.5e+02 2.1 0.1 3 12 58 67 57 69 0.86 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF140-210 - 354 6.3e-08 32.1 38.2 2 10 0.0036 2.4 7.8 0.1 3 14 86 97 84 105 0.84 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF140-210 - 354 6.3e-08 32.1 38.2 3 10 0.03 20 4.9 0.2 4 13 115 124 112 133 0.76 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF140-210 - 354 6.3e-08 32.1 38.2 4 10 0.0061 4.1 7.1 0.1 3 20 142 160 140 161 0.79 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF140-210 - 354 6.3e-08 32.1 38.2 5 10 0.002 1.3 8.6 0.1 2 20 169 188 168 189 0.81 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF140-210 - 354 6.3e-08 32.1 38.2 6 10 0.25 1.6e+02 2.0 0.1 3 12 198 207 196 217 0.82 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF140-210 - 354 6.3e-08 32.1 38.2 7 10 0.22 1.5e+02 2.1 0.6 3 15 226 238 224 242 0.82 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF140-210 - 354 6.3e-08 32.1 38.2 8 10 0.0029 1.9 8.1 0.1 3 15 254 266 252 273 0.75 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF140-210 - 354 6.3e-08 32.1 38.2 9 10 0.015 9.7 5.9 0.1 3 15 282 294 280 301 0.82 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF140-210 - 354 6.3e-08 32.1 38.2 10 10 0.019 13 5.5 0.1 3 18 310 326 308 329 0.76 Ubiquitin-Binding Zinc Finger # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF140-210.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF140-210.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF140-210.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF140-210.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF140-210.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:00:12 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZNF141-201 - 474 1.6e-76 249.6 99.6 1 12 0.23 2.1e+02 2.6 0.8 8 17 166 176 163 181 0.72 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF141-201 - 474 1.6e-76 249.6 99.6 2 12 5.1e-09 4.8e-06 26.7 1.3 1 25 185 209 185 209 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF141-201 - 474 1.6e-76 249.6 99.6 3 12 2.2e-09 2e-06 27.9 0.9 3 26 215 238 214 238 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF141-201 - 474 1.6e-76 249.6 99.6 4 12 2.2e-10 2.1e-07 31.1 2.8 2 25 242 265 241 266 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF141-201 - 474 1.6e-76 249.6 99.6 5 12 1.2e-08 1.1e-05 25.6 0.6 2 26 270 294 269 294 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF141-201 - 474 1.6e-76 249.6 99.6 6 12 1.1e-11 1e-08 35.2 2.0 1 25 297 321 297 322 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF141-201 - 474 1.6e-76 249.6 99.6 7 12 7.3e-12 6.9e-09 35.7 1.4 2 25 326 349 325 350 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF141-201 - 474 1.6e-76 249.6 99.6 8 12 1.4e-11 1.3e-08 34.9 1.0 2 25 354 377 353 378 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF141-201 - 474 1.6e-76 249.6 99.6 9 12 2.2e-11 2e-08 34.2 1.2 2 25 382 405 381 406 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF141-201 - 474 1.6e-76 249.6 99.6 10 12 1.4e-08 1.3e-05 25.4 2.2 3 26 411 434 409 434 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF141-201 - 474 1.6e-76 249.6 99.6 11 12 1.2e-10 1.2e-07 31.9 2.3 2 26 438 462 438 462 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF141-201 - 474 1.6e-76 249.6 99.6 12 12 0.7 6.6e+02 1.0 2.6 1 10 465 474 465 474 0.94 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZNF141-201 - 474 9e-49 161.3 85.8 1 11 0.0012 1.2 9.8 2.7 5 23 175 193 172 193 0.91 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF141-201 - 474 9e-49 161.3 85.8 2 11 0.001 0.95 10.0 0.2 1 11 199 209 199 221 0.83 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF141-201 - 474 9e-49 161.3 85.8 3 11 2.9e-06 0.0028 18.0 1.2 1 23 227 249 227 249 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF141-201 - 474 9e-49 161.3 85.8 4 11 5.1e-08 4.8e-05 23.6 1.6 1 23 255 277 255 277 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF141-201 - 474 9e-49 161.3 85.8 5 11 4.6e-07 0.00043 20.6 0.9 2 23 284 305 283 305 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF141-201 - 474 9e-49 161.3 85.8 6 11 7.8e-09 7.3e-06 26.2 1.3 1 23 311 333 311 333 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF141-201 - 474 9e-49 161.3 85.8 7 11 4.3e-08 4e-05 23.8 0.7 1 23 339 361 339 361 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF141-201 - 474 9e-49 161.3 85.8 8 11 4.2e-06 0.0039 17.6 0.3 1 23 367 389 367 389 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF141-201 - 474 9e-49 161.3 85.8 9 11 2.9e-06 0.0028 18.0 1.3 1 23 395 417 395 417 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF141-201 - 474 9e-49 161.3 85.8 10 11 2.2e-07 0.00021 21.6 1.8 1 23 423 445 423 445 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF141-201 - 474 9e-49 161.3 85.8 11 11 1.9e-08 1.8e-05 24.9 5.1 1 23 451 473 451 473 0.98 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZNF141-201 - 474 5.6e-27 92.1 78.0 1 11 0.03 28 5.9 0.7 5 23 175 193 174 194 0.87 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF141-201 - 474 5.6e-27 92.1 78.0 2 11 0.011 10 7.3 0.4 1 23 199 221 199 222 0.78 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF141-201 - 474 5.6e-27 92.1 78.0 3 11 0.00032 0.3 12.0 1.1 1 23 227 249 227 250 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF141-201 - 474 5.6e-27 92.1 78.0 4 11 1.3e-05 0.012 16.4 0.7 1 23 255 277 255 278 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF141-201 - 474 5.6e-27 92.1 78.0 5 11 0.00012 0.11 13.4 0.6 2 23 284 305 283 306 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF141-201 - 474 5.6e-27 92.1 78.0 6 11 6.5e-06 0.0062 17.3 0.8 1 23 311 333 311 334 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF141-201 - 474 5.6e-27 92.1 78.0 7 11 2.6e-05 0.024 15.4 0.8 1 23 339 361 339 362 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF141-201 - 474 5.6e-27 92.1 78.0 8 11 0.00015 0.14 13.0 0.3 1 23 367 389 367 390 0.91 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF141-201 - 474 5.6e-27 92.1 78.0 9 11 0.00014 0.13 13.2 1.1 1 23 395 417 395 418 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF141-201 - 474 5.6e-27 92.1 78.0 10 11 6.9e-05 0.066 14.1 1.8 1 23 423 445 423 446 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF141-201 - 474 5.6e-27 92.1 78.0 11 11 5.6e-05 0.053 14.4 3.6 1 23 451 473 451 474 0.96 C2H2-type zinc finger KRAB PF01352.27 42 ZNF141-201 - 474 6.2e-26 89.8 0.1 1 1 1.6e-28 1.5e-25 88.5 0.1 2 42 4 44 3 44 0.98 KRAB box zf-C2H2_6 PF13912.6 27 ZNF141-201 - 474 7.1e-17 61.0 83.7 1 11 0.0024 2.3 8.3 1.4 5 21 174 190 174 193 0.91 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF141-201 - 474 7.1e-17 61.0 83.7 2 11 0.037 35 4.5 0.9 2 12 199 209 199 209 0.91 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF141-201 - 474 7.1e-17 61.0 83.7 3 11 2.3 2.2e+03 -1.2 0.5 2 11 227 236 227 238 0.77 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF141-201 - 474 7.1e-17 61.0 83.7 4 11 7.5e-07 0.0007 19.5 0.9 2 24 255 277 255 280 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF141-201 - 474 7.1e-17 61.0 83.7 5 11 0.3 2.9e+02 1.6 0.6 4 24 285 305 284 308 0.86 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF141-201 - 474 7.1e-17 61.0 83.7 6 11 1.2e-05 0.011 15.7 1.1 2 24 311 333 311 336 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF141-201 - 474 7.1e-17 61.0 83.7 7 11 0.00025 0.24 11.5 1.6 2 24 339 361 339 364 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF141-201 - 474 7.1e-17 61.0 83.7 8 11 2e-07 0.00019 21.4 0.4 2 24 367 389 367 392 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF141-201 - 474 7.1e-17 61.0 83.7 9 11 0.0031 2.9 8.0 0.6 2 13 395 406 395 419 0.85 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF141-201 - 474 7.1e-17 61.0 83.7 10 11 0.00093 0.88 9.6 2.9 2 24 423 445 423 446 0.87 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF141-201 - 474 7.1e-17 61.0 83.7 11 11 9.8e-05 0.093 12.8 4.2 2 24 451 473 451 474 0.96 C2H2-type zinc finger XPA_N PF01286.18 32 ZNF141-201 - 474 3.6e-16 58.9 49.0 1 11 1 9.6e+02 -0.1 0.1 6 12 175 181 174 186 0.88 XPA protein N-terminal XPA_N PF01286.18 32 ZNF141-201 - 474 3.6e-16 58.9 49.0 2 11 0.0006 0.56 10.3 0.2 3 17 200 214 198 218 0.85 XPA protein N-terminal XPA_N PF01286.18 32 ZNF141-201 - 474 3.6e-16 58.9 49.0 3 11 0.00065 0.61 10.2 0.2 3 14 228 239 226 245 0.89 XPA protein N-terminal XPA_N PF01286.18 32 ZNF141-201 - 474 3.6e-16 58.9 49.0 4 11 0.0044 4.2 7.5 0.3 3 11 256 264 254 266 0.89 XPA protein N-terminal XPA_N PF01286.18 32 ZNF141-201 - 474 3.6e-16 58.9 49.0 5 11 0.0037 3.5 7.7 0.3 3 14 284 295 282 298 0.92 XPA protein N-terminal XPA_N PF01286.18 32 ZNF141-201 - 474 3.6e-16 58.9 49.0 6 11 0.00075 0.7 10.0 0.1 3 14 312 323 310 329 0.88 XPA protein N-terminal XPA_N PF01286.18 32 ZNF141-201 - 474 3.6e-16 58.9 49.0 7 11 0.00062 0.59 10.2 0.2 3 14 340 351 338 357 0.88 XPA protein N-terminal XPA_N PF01286.18 32 ZNF141-201 - 474 3.6e-16 58.9 49.0 8 11 0.00021 0.2 11.7 0.0 3 16 368 381 366 386 0.85 XPA protein N-terminal XPA_N PF01286.18 32 ZNF141-201 - 474 3.6e-16 58.9 49.0 9 11 0.0013 1.2 9.3 0.1 3 14 396 407 394 408 0.89 XPA protein N-terminal XPA_N PF01286.18 32 ZNF141-201 - 474 3.6e-16 58.9 49.0 10 11 0.0049 4.6 7.4 0.5 3 13 424 434 422 441 0.79 XPA protein N-terminal XPA_N PF01286.18 32 ZNF141-201 - 474 3.6e-16 58.9 49.0 11 11 0.042 40 4.4 0.4 3 12 452 461 450 464 0.90 XPA protein N-terminal zf-C2H2_jaz PF12171.8 27 ZNF141-201 - 474 4.3e-13 49.2 56.6 1 11 2.9 2.8e+03 -1.2 0.7 6 20 175 189 174 190 0.78 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF141-201 - 474 4.3e-13 49.2 56.6 2 11 0.034 32 5.0 0.2 2 20 199 217 198 219 0.76 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF141-201 - 474 4.3e-13 49.2 56.6 3 11 0.014 13 6.2 0.2 2 21 227 246 226 247 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF141-201 - 474 4.3e-13 49.2 56.6 4 11 0.006 5.7 7.4 0.2 2 21 255 274 254 275 0.88 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF141-201 - 474 4.3e-13 49.2 56.6 5 11 6e-05 0.057 13.7 0.2 3 22 284 303 282 303 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF141-201 - 474 4.3e-13 49.2 56.6 6 11 8e-05 0.076 13.3 0.1 2 22 311 331 310 331 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF141-201 - 474 4.3e-13 49.2 56.6 7 11 0.01 9.7 6.6 0.2 2 22 339 359 338 359 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF141-201 - 474 4.3e-13 49.2 56.6 8 11 0.00077 0.72 10.2 0.0 2 22 367 387 366 387 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF141-201 - 474 4.3e-13 49.2 56.6 9 11 0.0046 4.3 7.7 0.1 2 22 395 415 394 415 0.91 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF141-201 - 474 4.3e-13 49.2 56.6 10 11 0.004 3.8 7.9 1.5 2 13 423 434 422 443 0.75 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF141-201 - 474 4.3e-13 49.2 56.6 11 11 0.016 15 6.0 3.3 2 22 451 471 450 471 0.87 Zinc-finger double-stranded RNA-binding zf_UBZ PF18439.1 32 ZNF141-201 - 474 1.6e-12 46.7 47.0 1 11 0.72 6.8e+02 -0.0 0.1 7 20 175 189 174 190 0.76 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF141-201 - 474 1.6e-12 46.7 47.0 2 11 0.00062 0.58 9.8 0.1 3 20 199 217 197 218 0.84 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF141-201 - 474 1.6e-12 46.7 47.0 3 11 0.0095 8.9 6.0 0.2 3 15 227 239 225 246 0.79 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF141-201 - 474 1.6e-12 46.7 47.0 4 11 0.0049 4.6 6.9 0.1 3 13 255 265 253 274 0.80 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF141-201 - 474 1.6e-12 46.7 47.0 5 11 0.024 22 4.7 0.2 3 18 283 299 281 302 0.77 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF141-201 - 474 1.6e-12 46.7 47.0 6 11 0.003 2.8 7.6 0.1 3 16 311 325 309 330 0.77 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF141-201 - 474 1.6e-12 46.7 47.0 7 11 3.6e-05 0.034 13.7 0.3 3 20 339 357 337 358 0.93 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF141-201 - 474 1.6e-12 46.7 47.0 8 11 0.0028 2.6 7.7 0.1 3 20 367 385 365 386 0.81 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF141-201 - 474 1.6e-12 46.7 47.0 9 11 0.001 0.94 9.1 0.2 3 20 395 413 393 414 0.89 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF141-201 - 474 1.6e-12 46.7 47.0 10 11 0.0094 8.9 6.0 0.2 3 16 423 437 421 442 0.78 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF141-201 - 474 1.6e-12 46.7 47.0 11 11 0.04 38 4.0 0.2 3 13 451 461 449 470 0.82 Ubiquitin-Binding Zinc Finger Zn-ribbon_8 PF09723.10 40 ZNF141-201 - 474 1.7e-10 40.8 62.2 1 10 0.023 22 5.3 3.0 10 35 175 207 174 209 0.55 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF141-201 - 474 1.7e-10 40.8 62.2 2 10 0.00027 0.26 11.5 3.8 6 34 199 234 198 239 0.85 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF141-201 - 474 1.7e-10 40.8 62.2 3 10 0.023 22 5.3 0.4 6 17 227 238 226 246 0.78 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF141-201 - 474 1.7e-10 40.8 62.2 4 10 9.6e-05 0.091 12.9 3.8 6 33 255 289 254 294 0.75 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF141-201 - 474 1.7e-10 40.8 62.2 5 10 2.4e-05 0.022 14.8 5.2 6 37 311 349 310 351 0.87 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF141-201 - 474 1.7e-10 40.8 62.2 6 10 0.0051 4.8 7.4 0.5 6 22 339 355 338 360 0.78 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF141-201 - 474 1.7e-10 40.8 62.2 7 10 5.4e-05 0.051 13.7 5.2 6 38 367 406 366 408 0.89 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF141-201 - 474 1.7e-10 40.8 62.2 8 10 0.0025 2.4 8.4 0.6 6 17 395 406 394 418 0.79 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF141-201 - 474 1.7e-10 40.8 62.2 9 10 0.0021 2 8.6 0.2 6 22 423 439 422 446 0.83 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF141-201 - 474 1.7e-10 40.8 62.2 10 10 0.0019 1.7 8.8 0.2 6 22 451 467 450 473 0.83 Zinc ribbon domain zf-RING_7 PF02591.15 33 ZNF141-201 - 474 1.1e-09 38.2 32.3 1 9 0.0043 4 7.7 0.1 17 30 192 205 176 206 0.81 C4-type zinc ribbon domain zf-RING_7 PF02591.15 33 ZNF141-201 - 474 1.1e-09 38.2 32.3 2 9 0.00032 0.3 11.3 0.0 15 32 218 235 214 236 0.88 C4-type zinc ribbon domain zf-RING_7 PF02591.15 33 ZNF141-201 - 474 1.1e-09 38.2 32.3 3 9 0.08 76 3.6 0.1 18 30 249 261 246 262 0.80 C4-type zinc ribbon domain zf-RING_7 PF02591.15 33 ZNF141-201 - 474 1.1e-09 38.2 32.3 4 9 0.0018 1.7 8.9 0.3 15 31 274 290 272 291 0.89 C4-type zinc ribbon domain zf-RING_7 PF02591.15 33 ZNF141-201 - 474 1.1e-09 38.2 32.3 5 9 0.015 14 5.9 0.1 15 30 302 317 297 318 0.88 C4-type zinc ribbon domain zf-RING_7 PF02591.15 33 ZNF141-201 - 474 1.1e-09 38.2 32.3 6 9 0.0063 6 7.1 0.1 15 30 330 345 328 346 0.90 C4-type zinc ribbon domain zf-RING_7 PF02591.15 33 ZNF141-201 - 474 1.1e-09 38.2 32.3 7 9 0.073 69 3.7 0.2 16 30 359 373 355 374 0.80 C4-type zinc ribbon domain zf-RING_7 PF02591.15 33 ZNF141-201 - 474 1.1e-09 38.2 32.3 8 9 0.024 23 5.3 0.2 15 30 386 401 383 402 0.86 C4-type zinc ribbon domain zf-RING_7 PF02591.15 33 ZNF141-201 - 474 1.1e-09 38.2 32.3 9 9 0.39 3.7e+02 1.4 0.1 15 29 414 428 409 429 0.85 C4-type zinc ribbon domain # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF141-201.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF141-201.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF141-201.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF141-201.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF141-201.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:00:13 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF141-202.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF141-202.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF141-202.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF141-202.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF141-202.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:00:13 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- KRAB PF01352.27 42 ZNF141-203 - 147 1.7e-26 91.5 0.1 1 1 1.4e-30 2.5e-26 91.0 0.1 1 42 3 44 3 44 0.98 KRAB box # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF141-203.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF141-203.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF141-203.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF141-203.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF141-203.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:00:13 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- KRAB PF01352.27 42 ZNF141-204 - 113 9.8e-27 92.3 0.1 1 1 8.1e-31 1.5e-26 91.8 0.1 1 42 3 44 3 44 0.98 KRAB box # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF141-204.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF141-204.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF141-204.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF141-204.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF141-204.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:00:14 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- KRAB PF01352.27 42 ZNF141-205 - 201 1.8e-26 91.5 0.3 1 2 7.3e-30 4.3e-26 90.3 0.1 1 42 3 44 3 44 0.98 KRAB box KRAB PF01352.27 42 ZNF141-205 - 201 1.8e-26 91.5 0.3 2 2 0.85 5.1e+03 -2.8 0.0 10 16 80 86 78 87 0.86 KRAB box # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF141-205.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF141-205.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF141-205.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF141-205.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF141-205.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:00:14 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF141-206.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF141-206.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF141-206.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF141-206.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF141-206.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:00:14 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZNF142-201 - 1687 1.3e-45 151.8 292.9 1 37 0.57 1.7e+03 -0.3 3.9 15 26 163 174 159 174 0.85 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF142-201 - 1687 1.3e-45 151.8 292.9 2 37 0.00095 2.8 8.5 2.0 1 26 177 202 175 202 0.78 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF142-201 - 1687 1.3e-45 151.8 292.9 3 37 9.9e-05 0.3 11.6 2.0 2 23 206 227 205 229 0.87 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF142-201 - 1687 1.3e-45 151.8 292.9 4 37 9.6e-05 0.29 11.7 0.1 1 24 233 262 233 263 0.72 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF142-201 - 1687 1.3e-45 151.8 292.9 5 37 0.088 2.6e+02 2.3 0.0 1 17 267 288 267 297 0.71 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF142-201 - 1687 1.3e-45 151.8 292.9 6 37 0.067 2e+02 2.7 1.1 3 25 304 328 302 329 0.85 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF142-201 - 1687 1.3e-45 151.8 292.9 7 37 0.61 1.8e+03 -0.4 5.4 9 25 337 353 333 354 0.69 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF142-201 - 1687 1.3e-45 151.8 292.9 8 37 0.00073 2.2 8.9 1.1 2 24 358 381 357 383 0.88 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF142-201 - 1687 1.3e-45 151.8 292.9 9 37 4.7e-05 0.14 12.6 1.8 2 26 387 412 386 412 0.87 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF142-201 - 1687 1.3e-45 151.8 292.9 10 37 1.2e-08 3.5e-05 24.0 3.0 2 23 416 437 416 439 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF142-201 - 1687 1.3e-45 151.8 292.9 11 37 9.3e-06 0.028 14.9 0.9 2 25 444 467 443 467 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF142-201 - 1687 1.3e-45 151.8 292.9 12 37 1.5e-05 0.044 14.2 3.5 2 23 472 493 471 496 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF142-201 - 1687 1.3e-45 151.8 292.9 13 37 0.03 89 3.8 1.0 2 25 500 522 499 523 0.89 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF142-201 - 1687 1.3e-45 151.8 292.9 14 37 6e-05 0.18 12.3 3.6 2 23 527 552 526 555 0.89 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF142-201 - 1687 1.3e-45 151.8 292.9 15 37 0.0093 28 5.4 2.0 5 24 562 582 559 584 0.85 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF142-201 - 1687 1.3e-45 151.8 292.9 16 37 0.22 6.6e+02 1.0 0.1 12 21 832 842 830 845 0.76 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF142-201 - 1687 1.3e-45 151.8 292.9 17 37 0.011 34 5.1 0.1 14 26 865 877 850 877 0.77 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF142-201 - 1687 1.3e-45 151.8 292.9 18 37 1.2 3.7e+03 -1.3 2.9 7 21 1017 1032 1016 1036 0.78 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF142-201 - 1687 1.3e-45 151.8 292.9 19 37 0.86 2.6e+03 -0.8 1.3 14 22 1103 1111 1096 1113 0.74 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF142-201 - 1687 1.3e-45 151.8 292.9 20 37 0.74 2.2e+03 -0.6 0.2 15 23 1135 1143 1120 1144 0.84 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF142-201 - 1687 1.3e-45 151.8 292.9 21 37 0.0029 8.8 7.0 0.9 1 25 1149 1181 1149 1182 0.87 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF142-201 - 1687 1.3e-45 151.8 292.9 22 37 3.3e-08 0.0001 22.6 2.0 3 25 1187 1210 1186 1211 0.89 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF142-201 - 1687 1.3e-45 151.8 292.9 23 37 1.1e-05 0.034 14.6 0.0 2 26 1215 1239 1214 1239 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF142-201 - 1687 1.3e-45 151.8 292.9 24 37 0.00083 2.5 8.7 1.6 2 23 1243 1265 1242 1266 0.80 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF142-201 - 1687 1.3e-45 151.8 292.9 25 37 0.018 55 4.4 0.2 3 25 1273 1296 1271 1297 0.82 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF142-201 - 1687 1.3e-45 151.8 292.9 26 37 0.93 2.8e+03 -0.9 0.2 2 20 1301 1333 1300 1335 0.50 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF142-201 - 1687 1.3e-45 151.8 292.9 27 37 0.029 88 3.8 0.2 2 24 1343 1363 1342 1365 0.75 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF142-201 - 1687 1.3e-45 151.8 292.9 28 37 0.1 3.1e+02 2.1 0.4 3 23 1370 1388 1368 1390 0.69 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF142-201 - 1687 1.3e-45 151.8 292.9 29 37 0.0032 9.5 6.8 0.2 2 24 1395 1433 1394 1435 0.73 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF142-201 - 1687 1.3e-45 151.8 292.9 30 37 4e-05 0.12 12.9 0.8 4 26 1441 1463 1439 1463 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF142-201 - 1687 1.3e-45 151.8 292.9 31 37 2.5e-08 7.3e-05 23.0 3.8 4 23 1469 1488 1467 1490 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF142-201 - 1687 1.3e-45 151.8 292.9 32 37 3.2e-07 0.00094 19.5 5.9 2 25 1495 1518 1494 1518 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF142-201 - 1687 1.3e-45 151.8 292.9 33 37 2.6e-09 7.7e-06 26.1 4.0 2 25 1523 1546 1522 1547 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF142-201 - 1687 1.3e-45 151.8 292.9 34 37 0.00017 0.5 10.9 0.2 1 26 1550 1576 1550 1576 0.84 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF142-201 - 1687 1.3e-45 151.8 292.9 35 37 1.5e-06 0.0046 17.3 2.1 2 24 1580 1602 1580 1603 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF142-201 - 1687 1.3e-45 151.8 292.9 36 37 0.00082 2.5 8.7 3.4 2 25 1608 1631 1607 1632 0.89 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF142-201 - 1687 1.3e-45 151.8 292.9 37 37 0.41 1.2e+03 0.2 0.3 3 11 1637 1645 1636 1649 0.86 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZNF142-201 - 1687 1.4e-27 94.6 339.9 1 36 0.00048 1.4 9.5 9.3 1 23 163 185 163 185 0.95 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF142-201 - 1687 1.4e-27 94.6 339.9 2 36 3.6e-06 0.011 16.2 1.2 2 21 192 211 191 212 0.93 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF142-201 - 1687 1.4e-27 94.6 339.9 3 36 0.0072 22 5.8 3.3 1 23 219 242 219 242 0.95 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF142-201 - 1687 1.4e-27 94.6 339.9 4 36 0.00015 0.45 11.1 0.2 1 23 253 275 253 275 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF142-201 - 1687 1.4e-27 94.6 339.9 5 36 0.063 1.9e+02 2.8 0.2 2 23 287 311 286 311 0.91 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF142-201 - 1687 1.4e-27 94.6 339.9 6 36 0.24 7.2e+02 1.0 3.1 4 23 319 340 317 340 0.88 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF142-201 - 1687 1.4e-27 94.6 339.9 7 36 0.0066 20 5.9 10.0 1 23 343 366 343 366 0.95 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF142-201 - 1687 1.4e-27 94.6 339.9 8 36 0.14 4.2e+02 1.7 0.2 2 23 373 395 372 395 0.89 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF142-201 - 1687 1.4e-27 94.6 339.9 9 36 0.00015 0.45 11.1 1.8 1 23 401 423 401 423 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF142-201 - 1687 1.4e-27 94.6 339.9 10 36 9.5e-05 0.28 11.7 5.1 1 23 429 451 429 451 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF142-201 - 1687 1.4e-27 94.6 339.9 11 36 2.9e-05 0.085 13.3 3.1 1 23 457 479 457 479 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF142-201 - 1687 1.4e-27 94.6 339.9 12 36 0.0031 9.2 6.9 6.3 1 23 485 507 485 507 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF142-201 - 1687 1.4e-27 94.6 339.9 13 36 5.5e-05 0.17 12.4 2.8 2 23 513 535 512 536 0.94 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF142-201 - 1687 1.4e-27 94.6 339.9 14 36 0.031 93 3.8 1.8 1 19 544 562 544 564 0.87 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF142-201 - 1687 1.4e-27 94.6 339.9 15 36 0.36 1.1e+03 0.4 2.3 1 18 573 590 573 596 0.68 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF142-201 - 1687 1.4e-27 94.6 339.9 16 36 0.00072 2.1 8.9 0.8 1 22 836 857 836 857 0.95 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF142-201 - 1687 1.4e-27 94.6 339.9 17 36 4.1e-05 0.12 12.8 0.1 3 21 868 886 867 887 0.94 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF142-201 - 1687 1.4e-27 94.6 339.9 18 36 0.17 5.1e+02 1.5 1.5 1 20 1026 1045 1026 1047 0.92 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF142-201 - 1687 1.4e-27 94.6 339.9 19 36 0.0016 4.7 7.9 1.0 1 21 1104 1124 1104 1125 0.94 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF142-201 - 1687 1.4e-27 94.6 339.9 20 36 0.0093 28 5.4 0.6 3 23 1137 1158 1135 1158 0.95 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF142-201 - 1687 1.4e-27 94.6 339.9 21 36 0.00083 2.5 8.7 5.7 2 23 1172 1194 1171 1194 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF142-201 - 1687 1.4e-27 94.6 339.9 22 36 1.9e-05 0.057 13.9 3.6 1 23 1200 1222 1200 1222 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF142-201 - 1687 1.4e-27 94.6 339.9 23 36 9.9e-05 0.3 11.6 0.5 2 23 1229 1251 1228 1251 0.95 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF142-201 - 1687 1.4e-27 94.6 339.9 24 36 0.5 1.5e+03 -0.0 5.2 2 23 1258 1280 1257 1280 0.93 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF142-201 - 1687 1.4e-27 94.6 339.9 25 36 0.0011 3.3 8.4 0.2 1 23 1286 1309 1286 1309 0.95 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF142-201 - 1687 1.4e-27 94.6 339.9 26 36 0.021 63 4.3 2.7 3 23 1330 1351 1328 1351 0.95 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF142-201 - 1687 1.4e-27 94.6 339.9 27 36 0.011 34 5.2 0.0 2 23 1355 1377 1354 1377 0.94 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF142-201 - 1687 1.4e-27 94.6 339.9 28 36 0.032 96 3.7 0.4 1 23 1380 1403 1380 1403 0.93 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF142-201 - 1687 1.4e-27 94.6 339.9 29 36 2.7 8.2e+03 -2.3 6.8 3 23 1426 1446 1424 1446 0.91 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF142-201 - 1687 1.4e-27 94.6 339.9 30 36 0.0013 3.9 8.1 1.3 1 23 1452 1474 1452 1474 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF142-201 - 1687 1.4e-27 94.6 339.9 31 36 6.7e-05 0.2 12.2 5.3 1 23 1480 1502 1480 1502 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF142-201 - 1687 1.4e-27 94.6 339.9 32 36 0.009 27 5.5 2.2 1 23 1508 1530 1508 1530 0.95 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF142-201 - 1687 1.4e-27 94.6 339.9 33 36 2.6e-06 0.0077 16.6 0.8 1 23 1536 1559 1536 1559 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF142-201 - 1687 1.4e-27 94.6 339.9 34 36 4.9e-08 0.00015 22.1 2.0 1 23 1565 1587 1565 1587 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF142-201 - 1687 1.4e-27 94.6 339.9 35 36 0.00014 0.42 11.2 0.9 1 23 1593 1615 1593 1615 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF142-201 - 1687 1.4e-27 94.6 339.9 36 36 0.0081 24 5.6 4.3 1 23 1621 1643 1621 1644 0.94 Zinc finger, C2H2 type zf-H2C2_5 PF13909.6 26 ZNF142-201 - 1687 8.9e-21 73.3 242.4 1 30 0.82 2.5e+03 -1.6 0.5 12 21 202 211 201 212 0.86 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 ZNF142-201 - 1687 8.9e-21 73.3 242.4 2 30 5.8e-06 0.017 14.8 2.4 3 25 221 243 219 244 0.94 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 ZNF142-201 - 1687 8.9e-21 73.3 242.4 3 30 0.28 8.4e+02 -0.1 0.1 15 25 267 276 265 277 0.87 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 ZNF142-201 - 1687 8.9e-21 73.3 242.4 4 30 0.022 67 3.4 0.0 6 24 293 311 287 312 0.95 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 ZNF142-201 - 1687 8.9e-21 73.3 242.4 5 30 0.058 1.7e+02 2.1 5.7 1 19 343 361 343 366 0.76 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 ZNF142-201 - 1687 8.9e-21 73.3 242.4 6 30 0.021 63 3.5 0.1 2 10 373 381 372 395 0.81 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 ZNF142-201 - 1687 8.9e-21 73.3 242.4 7 30 1.3e-10 4e-07 29.7 0.2 1 26 401 425 401 425 0.96 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 ZNF142-201 - 1687 8.9e-21 73.3 242.4 8 30 0.00052 1.6 8.6 5.8 1 25 429 452 429 453 0.95 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 ZNF142-201 - 1687 8.9e-21 73.3 242.4 9 30 4.1e-08 0.00012 21.7 2.4 1 26 457 481 457 481 0.94 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 ZNF142-201 - 1687 8.9e-21 73.3 242.4 10 30 0.004 12 5.8 5.6 1 20 485 504 485 509 0.81 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 ZNF142-201 - 1687 8.9e-21 73.3 242.4 11 30 0.003 8.8 6.2 2.0 3 25 514 536 513 537 0.93 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 ZNF142-201 - 1687 8.9e-21 73.3 242.4 12 30 0.1 3.1e+02 1.3 5.7 1 15 544 558 544 568 0.81 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 ZNF142-201 - 1687 8.9e-21 73.3 242.4 13 30 0.12 3.5e+02 1.1 0.9 2 16 574 588 573 597 0.73 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 ZNF142-201 - 1687 8.9e-21 73.3 242.4 14 30 2.2e-06 0.0065 16.2 0.1 1 21 836 856 836 857 0.95 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 ZNF142-201 - 1687 8.9e-21 73.3 242.4 15 30 0.057 1.7e+02 2.1 0.9 1 19 1104 1122 1104 1122 0.92 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 ZNF142-201 - 1687 8.9e-21 73.3 242.4 16 30 0.077 2.3e+02 1.7 0.2 3 24 1137 1158 1135 1160 0.89 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 ZNF142-201 - 1687 8.9e-21 73.3 242.4 17 30 0.15 4.6e+02 0.7 2.5 3 26 1173 1196 1171 1196 0.89 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 ZNF142-201 - 1687 8.9e-21 73.3 242.4 18 30 9.8e-06 0.029 14.1 1.6 1 26 1200 1224 1200 1224 0.85 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 ZNF142-201 - 1687 8.9e-21 73.3 242.4 19 30 0.55 1.6e+03 -1.1 0.4 12 26 1239 1253 1230 1253 0.79 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 ZNF142-201 - 1687 8.9e-21 73.3 242.4 20 30 0.0019 5.5 6.8 2.5 2 26 1258 1282 1257 1282 0.90 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 ZNF142-201 - 1687 8.9e-21 73.3 242.4 21 30 0.55 1.6e+03 -1.1 0.3 3 7 1288 1292 1286 1309 0.52 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 ZNF142-201 - 1687 8.9e-21 73.3 242.4 22 30 0.0025 7.6 6.4 0.1 1 24 1380 1403 1380 1405 0.91 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 ZNF142-201 - 1687 8.9e-21 73.3 242.4 23 30 0.00017 0.5 10.2 2.0 3 26 1426 1448 1424 1448 0.94 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 ZNF142-201 - 1687 8.9e-21 73.3 242.4 24 30 4.8e-05 0.14 11.9 2.8 1 26 1452 1476 1452 1476 0.99 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 ZNF142-201 - 1687 8.9e-21 73.3 242.4 25 30 0.00043 1.3 8.9 4.6 1 25 1480 1503 1480 1504 0.95 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 ZNF142-201 - 1687 8.9e-21 73.3 242.4 26 30 1e-06 0.003 17.3 3.2 2 26 1509 1532 1508 1532 0.95 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 ZNF142-201 - 1687 8.9e-21 73.3 242.4 27 30 0.0024 7.1 6.5 1.3 1 24 1536 1559 1536 1560 0.87 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 ZNF142-201 - 1687 8.9e-21 73.3 242.4 28 30 0.13 3.9e+02 0.9 0.2 16 25 1580 1588 1565 1589 0.80 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 ZNF142-201 - 1687 8.9e-21 73.3 242.4 29 30 2 5.9e+03 -2.9 0.2 15 25 1607 1616 1604 1616 0.82 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 ZNF142-201 - 1687 8.9e-21 73.3 242.4 30 30 2.3e-05 0.068 12.9 2.1 1 24 1621 1644 1621 1645 0.91 C2H2-type zinc-finger domain zf-C2H2_4 PF13894.6 24 ZNF142-201 - 1687 2.4e-16 59.0 325.4 1 36 0.099 3e+02 2.7 8.5 1 23 163 185 163 186 0.91 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF142-201 - 1687 2.4e-16 59.0 325.4 2 36 3.9e-05 0.12 13.3 0.8 2 22 192 212 191 213 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF142-201 - 1687 2.4e-16 59.0 325.4 3 36 0.00099 3 8.9 3.3 1 24 219 242 219 242 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF142-201 - 1687 2.4e-16 59.0 325.4 4 36 7e-06 0.021 15.6 0.4 1 23 253 275 253 276 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF142-201 - 1687 2.4e-16 59.0 325.4 5 36 1.1 3.3e+03 -0.6 0.2 6 24 293 311 287 311 0.79 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF142-201 - 1687 2.4e-16 59.0 325.4 6 36 0.1 3.1e+02 2.7 2.4 2 23 317 340 316 341 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF142-201 - 1687 2.4e-16 59.0 325.4 7 36 0.029 87 4.4 7.3 1 21 343 363 343 364 0.75 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF142-201 - 1687 2.4e-16 59.0 325.4 8 36 0.0042 13 7.0 0.2 2 24 373 395 372 395 0.76 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF142-201 - 1687 2.4e-16 59.0 325.4 9 36 0.00072 2.1 9.4 1.7 1 23 401 423 401 424 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF142-201 - 1687 2.4e-16 59.0 325.4 10 36 0.0009 2.7 9.1 4.5 1 23 429 451 429 452 0.79 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF142-201 - 1687 2.4e-16 59.0 325.4 11 36 0.00076 2.3 9.3 1.8 1 23 457 479 457 480 0.87 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF142-201 - 1687 2.4e-16 59.0 325.4 12 36 0.0069 21 6.3 5.0 1 23 485 507 485 508 0.88 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF142-201 - 1687 2.4e-16 59.0 325.4 13 36 0.0005 1.5 9.9 1.8 2 24 513 535 512 535 0.84 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF142-201 - 1687 2.4e-16 59.0 325.4 14 36 0.075 2.2e+02 3.1 1.4 1 19 544 562 544 564 0.70 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF142-201 - 1687 2.4e-16 59.0 325.4 15 36 0.058 1.7e+02 3.4 2.8 1 24 573 596 573 596 0.88 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF142-201 - 1687 2.4e-16 59.0 325.4 16 36 0.0082 24 6.1 0.5 1 21 836 856 836 857 0.77 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF142-201 - 1687 2.4e-16 59.0 325.4 17 36 2.5e-05 0.076 13.9 0.1 3 22 868 887 866 888 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF142-201 - 1687 2.4e-16 59.0 325.4 18 36 1.6 4.8e+03 -1.1 1.8 1 19 1026 1044 1026 1047 0.63 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF142-201 - 1687 2.4e-16 59.0 325.4 19 36 0.0051 15 6.7 1.1 1 20 1104 1123 1104 1125 0.88 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF142-201 - 1687 2.4e-16 59.0 325.4 20 36 0.059 1.8e+02 3.4 0.8 2 24 1136 1158 1135 1158 0.84 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF142-201 - 1687 2.4e-16 59.0 325.4 21 36 0.094 2.8e+02 2.8 4.4 2 24 1172 1194 1171 1194 0.81 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF142-201 - 1687 2.4e-16 59.0 325.4 22 36 0.0033 10 7.3 2.3 1 23 1200 1222 1200 1223 0.83 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF142-201 - 1687 2.4e-16 59.0 325.4 23 36 9.5e-05 0.28 12.1 0.4 2 24 1229 1251 1228 1251 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF142-201 - 1687 2.4e-16 59.0 325.4 24 36 1.9 5.7e+03 -1.3 4.5 2 24 1258 1280 1257 1280 0.79 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF142-201 - 1687 2.4e-16 59.0 325.4 25 36 6.9e-06 0.02 15.7 0.4 1 24 1286 1309 1286 1309 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF142-201 - 1687 2.4e-16 59.0 325.4 26 36 0.029 88 4.4 2.6 2 24 1329 1351 1328 1351 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF142-201 - 1687 2.4e-16 59.0 325.4 27 36 0.0027 8 7.6 0.1 2 24 1355 1377 1354 1377 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF142-201 - 1687 2.4e-16 59.0 325.4 28 36 0.15 4.4e+02 2.2 0.6 1 24 1380 1403 1380 1403 0.79 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF142-201 - 1687 2.4e-16 59.0 325.4 29 36 0.0084 25 6.0 5.1 2 23 1425 1446 1424 1447 0.88 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF142-201 - 1687 2.4e-16 59.0 325.4 30 36 0.12 3.5e+02 2.5 0.5 1 15 1452 1464 1452 1475 0.73 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF142-201 - 1687 2.4e-16 59.0 325.4 31 36 0.0056 17 6.6 4.8 1 23 1480 1502 1480 1503 0.89 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF142-201 - 1687 2.4e-16 59.0 325.4 32 36 0.014 40 5.4 2.3 1 23 1508 1530 1508 1531 0.79 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF142-201 - 1687 2.4e-16 59.0 325.4 33 36 0.00068 2 9.5 0.7 1 24 1536 1559 1536 1559 0.86 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF142-201 - 1687 2.4e-16 59.0 325.4 34 36 8.1e-07 0.0024 18.6 1.7 1 23 1565 1587 1565 1588 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF142-201 - 1687 2.4e-16 59.0 325.4 35 36 0.0013 3.9 8.6 1.2 1 23 1593 1615 1593 1616 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF142-201 - 1687 2.4e-16 59.0 325.4 36 36 0.0041 12 7.0 4.4 1 24 1621 1644 1621 1644 0.89 C2H2-type zinc finger # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF142-201.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF142-201.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF142-201.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF142-201.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF142-201.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:00:15 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF142-202.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF142-202.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF142-202.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF142-202.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF142-202.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:00:15 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZNF142-203 - 1524 6.6e-47 155.9 292.2 1 37 1.8 5.5e+03 -1.9 3.7 17 26 2 11 1 11 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF142-203 - 1524 6.6e-47 155.9 292.2 2 37 0.00085 2.5 8.7 2.0 1 26 14 39 12 39 0.78 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF142-203 - 1524 6.6e-47 155.9 292.2 3 37 8.9e-05 0.27 11.8 2.0 2 23 43 64 42 66 0.87 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF142-203 - 1524 6.6e-47 155.9 292.2 4 37 8.6e-05 0.26 11.8 0.1 1 24 70 99 70 100 0.72 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF142-203 - 1524 6.6e-47 155.9 292.2 5 37 0.079 2.4e+02 2.4 0.0 1 17 104 125 104 134 0.71 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF142-203 - 1524 6.6e-47 155.9 292.2 6 37 0.06 1.8e+02 2.8 1.1 3 25 141 165 139 166 0.85 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF142-203 - 1524 6.6e-47 155.9 292.2 7 37 0.55 1.6e+03 -0.2 5.4 9 25 174 190 170 191 0.69 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF142-203 - 1524 6.6e-47 155.9 292.2 8 37 0.00065 2 9.0 1.1 2 24 195 218 194 220 0.88 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF142-203 - 1524 6.6e-47 155.9 292.2 9 37 4.2e-05 0.13 12.8 1.8 2 26 224 249 223 249 0.87 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF142-203 - 1524 6.6e-47 155.9 292.2 10 37 1e-08 3.1e-05 24.2 3.0 2 23 253 274 253 276 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF142-203 - 1524 6.6e-47 155.9 292.2 11 37 8.4e-06 0.025 15.0 0.9 2 25 281 304 280 304 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF142-203 - 1524 6.6e-47 155.9 292.2 12 37 1.3e-05 0.04 14.4 3.5 2 23 309 330 308 333 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF142-203 - 1524 6.6e-47 155.9 292.2 13 37 0.027 80 3.9 1.0 2 25 337 359 336 360 0.89 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF142-203 - 1524 6.6e-47 155.9 292.2 14 37 5.3e-05 0.16 12.5 3.6 2 23 364 389 363 392 0.89 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF142-203 - 1524 6.6e-47 155.9 292.2 15 37 0.0083 25 5.5 2.0 5 24 399 419 396 421 0.85 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF142-203 - 1524 6.6e-47 155.9 292.2 16 37 0.2 5.9e+02 1.2 0.1 12 21 669 679 667 682 0.76 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF142-203 - 1524 6.6e-47 155.9 292.2 17 37 0.01 30 5.3 0.1 14 26 702 714 687 714 0.77 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF142-203 - 1524 6.6e-47 155.9 292.2 18 37 1.1 3.3e+03 -1.2 2.9 7 21 854 869 853 873 0.78 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF142-203 - 1524 6.6e-47 155.9 292.2 19 37 0.77 2.3e+03 -0.7 1.3 14 22 940 948 933 950 0.74 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF142-203 - 1524 6.6e-47 155.9 292.2 20 37 0.66 2e+03 -0.5 0.2 15 23 972 980 957 981 0.84 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF142-203 - 1524 6.6e-47 155.9 292.2 21 37 0.0026 7.8 7.1 0.9 1 25 986 1018 986 1019 0.87 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF142-203 - 1524 6.6e-47 155.9 292.2 22 37 3e-08 8.9e-05 22.7 2.0 3 25 1024 1047 1023 1048 0.89 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF142-203 - 1524 6.6e-47 155.9 292.2 23 37 1e-05 0.031 14.7 0.0 2 26 1052 1076 1051 1076 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF142-203 - 1524 6.6e-47 155.9 292.2 24 37 0.00074 2.2 8.9 1.6 2 23 1080 1102 1079 1103 0.80 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF142-203 - 1524 6.6e-47 155.9 292.2 25 37 0.017 49 4.6 0.2 3 25 1110 1133 1108 1134 0.82 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF142-203 - 1524 6.6e-47 155.9 292.2 26 37 0.83 2.5e+03 -0.8 0.2 2 20 1138 1170 1137 1172 0.51 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF142-203 - 1524 6.6e-47 155.9 292.2 27 37 0.026 78 4.0 0.2 2 24 1180 1200 1179 1202 0.75 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF142-203 - 1524 6.6e-47 155.9 292.2 28 37 0.093 2.8e+02 2.2 0.4 3 23 1207 1225 1205 1227 0.69 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF142-203 - 1524 6.6e-47 155.9 292.2 29 37 0.0028 8.5 7.0 0.2 2 24 1232 1270 1231 1272 0.73 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF142-203 - 1524 6.6e-47 155.9 292.2 30 37 3.6e-05 0.11 13.0 0.8 4 26 1278 1300 1276 1300 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF142-203 - 1524 6.6e-47 155.9 292.2 31 37 2.2e-08 6.6e-05 23.2 3.8 4 23 1306 1325 1304 1327 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF142-203 - 1524 6.6e-47 155.9 292.2 32 37 2.8e-07 0.00084 19.7 5.9 2 25 1332 1355 1331 1355 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF142-203 - 1524 6.6e-47 155.9 292.2 33 37 2.3e-09 6.9e-06 26.3 4.0 2 25 1360 1383 1359 1384 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF142-203 - 1524 6.6e-47 155.9 292.2 34 37 0.00015 0.45 11.1 0.2 1 26 1387 1413 1387 1413 0.84 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF142-203 - 1524 6.6e-47 155.9 292.2 35 37 1.4e-06 0.0041 17.5 2.1 2 24 1417 1439 1417 1440 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF142-203 - 1524 6.6e-47 155.9 292.2 36 37 0.00074 2.2 8.9 3.4 2 25 1445 1468 1444 1469 0.89 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF142-203 - 1524 6.6e-47 155.9 292.2 37 37 0.33 9.8e+02 0.5 0.2 3 11 1474 1482 1473 1487 0.86 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZNF142-203 - 1524 1.7e-29 100.6 338.0 1 36 0.00027 0.8 10.3 7.4 3 23 2 22 1 22 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF142-203 - 1524 1.7e-29 100.6 338.0 2 36 3.3e-06 0.0097 16.3 1.2 2 21 29 48 28 49 0.93 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF142-203 - 1524 1.7e-29 100.6 338.0 3 36 0.0065 19 5.9 3.3 1 23 56 79 56 79 0.95 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF142-203 - 1524 1.7e-29 100.6 338.0 4 36 0.00013 0.4 11.2 0.2 1 23 90 112 90 112 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF142-203 - 1524 1.7e-29 100.6 338.0 5 36 0.057 1.7e+02 3.0 0.2 2 23 124 148 123 148 0.91 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF142-203 - 1524 1.7e-29 100.6 338.0 6 36 0.21 6.4e+02 1.1 3.1 4 23 156 177 154 177 0.88 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF142-203 - 1524 1.7e-29 100.6 338.0 7 36 0.0059 18 6.1 10.0 1 23 180 203 180 203 0.95 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF142-203 - 1524 1.7e-29 100.6 338.0 8 36 0.12 3.7e+02 1.9 0.2 2 23 210 232 209 232 0.89 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF142-203 - 1524 1.7e-29 100.6 338.0 9 36 0.00013 0.4 11.2 1.8 1 23 238 260 238 260 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF142-203 - 1524 1.7e-29 100.6 338.0 10 36 8.5e-05 0.25 11.9 5.1 1 23 266 288 266 288 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF142-203 - 1524 1.7e-29 100.6 338.0 11 36 2.6e-05 0.076 13.5 3.1 1 23 294 316 294 316 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF142-203 - 1524 1.7e-29 100.6 338.0 12 36 0.0027 8.2 7.1 6.3 1 23 322 344 322 344 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF142-203 - 1524 1.7e-29 100.6 338.0 13 36 4.9e-05 0.15 12.6 2.8 2 23 350 372 349 373 0.94 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF142-203 - 1524 1.7e-29 100.6 338.0 14 36 0.028 83 3.9 1.8 1 19 381 399 381 401 0.87 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF142-203 - 1524 1.7e-29 100.6 338.0 15 36 0.32 9.6e+02 0.6 2.3 1 18 410 427 410 433 0.68 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF142-203 - 1524 1.7e-29 100.6 338.0 16 36 0.00064 1.9 9.1 0.8 1 22 673 694 673 694 0.95 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF142-203 - 1524 1.7e-29 100.6 338.0 17 36 3.7e-05 0.11 13.0 0.1 3 21 705 723 704 724 0.94 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF142-203 - 1524 1.7e-29 100.6 338.0 18 36 0.15 4.5e+02 1.6 1.5 1 20 863 882 863 884 0.92 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF142-203 - 1524 1.7e-29 100.6 338.0 19 36 0.0014 4.2 8.0 1.0 1 21 941 961 941 962 0.94 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF142-203 - 1524 1.7e-29 100.6 338.0 20 36 0.0083 25 5.6 0.6 3 23 974 995 972 995 0.95 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF142-203 - 1524 1.7e-29 100.6 338.0 21 36 0.00074 2.2 8.9 5.7 2 23 1009 1031 1008 1031 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF142-203 - 1524 1.7e-29 100.6 338.0 22 36 1.7e-05 0.051 14.0 3.6 1 23 1037 1059 1037 1059 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF142-203 - 1524 1.7e-29 100.6 338.0 23 36 8.9e-05 0.27 11.8 0.5 2 23 1066 1088 1065 1088 0.95 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF142-203 - 1524 1.7e-29 100.6 338.0 24 36 0.45 1.3e+03 0.1 5.2 2 23 1095 1117 1094 1117 0.93 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF142-203 - 1524 1.7e-29 100.6 338.0 25 36 0.00098 2.9 8.5 0.2 1 23 1123 1146 1123 1146 0.95 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF142-203 - 1524 1.7e-29 100.6 338.0 26 36 0.019 56 4.5 2.7 3 23 1167 1188 1165 1188 0.95 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF142-203 - 1524 1.7e-29 100.6 338.0 27 36 0.01 30 5.3 0.0 2 23 1192 1214 1191 1214 0.94 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF142-203 - 1524 1.7e-29 100.6 338.0 28 36 0.029 86 3.9 0.4 1 23 1217 1240 1217 1240 0.93 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF142-203 - 1524 1.7e-29 100.6 338.0 29 36 2.4 7.3e+03 -2.2 6.8 3 23 1263 1283 1261 1283 0.91 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF142-203 - 1524 1.7e-29 100.6 338.0 30 36 0.0012 3.5 8.3 1.3 1 23 1289 1311 1289 1311 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF142-203 - 1524 1.7e-29 100.6 338.0 31 36 6e-05 0.18 12.3 5.3 1 23 1317 1339 1317 1339 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF142-203 - 1524 1.7e-29 100.6 338.0 32 36 0.0081 24 5.6 2.2 1 23 1345 1367 1345 1367 0.95 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF142-203 - 1524 1.7e-29 100.6 338.0 33 36 2.3e-06 0.0069 16.8 0.8 1 23 1373 1396 1373 1396 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF142-203 - 1524 1.7e-29 100.6 338.0 34 36 4.4e-08 0.00013 22.2 2.0 1 23 1402 1424 1402 1424 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF142-203 - 1524 1.7e-29 100.6 338.0 35 36 0.00013 0.38 11.3 0.9 1 23 1430 1452 1430 1452 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF142-203 - 1524 1.7e-29 100.6 338.0 36 36 0.0073 22 5.8 4.3 1 23 1458 1480 1458 1481 0.94 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZNF142-203 - 1524 2.6e-18 65.1 323.6 1 36 0.051 1.5e+02 3.6 6.7 3 23 2 22 1 23 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF142-203 - 1524 2.6e-18 65.1 323.6 2 36 3.5e-05 0.1 13.5 0.8 2 22 29 49 28 50 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF142-203 - 1524 2.6e-18 65.1 323.6 3 36 0.00088 2.6 9.1 3.3 1 24 56 79 56 79 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF142-203 - 1524 2.6e-18 65.1 323.6 4 36 6.2e-06 0.019 15.8 0.4 1 23 90 112 90 113 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF142-203 - 1524 2.6e-18 65.1 323.6 5 36 1 3e+03 -0.4 0.2 6 24 130 148 124 148 0.79 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF142-203 - 1524 2.6e-18 65.1 323.6 6 36 0.093 2.8e+02 2.8 2.4 2 23 154 177 153 178 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF142-203 - 1524 2.6e-18 65.1 323.6 7 36 0.026 78 4.5 7.3 1 21 180 200 180 201 0.75 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF142-203 - 1524 2.6e-18 65.1 323.6 8 36 0.0038 11 7.1 0.2 2 24 210 232 209 232 0.76 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF142-203 - 1524 2.6e-18 65.1 323.6 9 36 0.00064 1.9 9.5 1.7 1 23 238 260 238 261 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF142-203 - 1524 2.6e-18 65.1 323.6 10 36 0.0008 2.4 9.2 4.5 1 23 266 288 266 289 0.79 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF142-203 - 1524 2.6e-18 65.1 323.6 11 36 0.00068 2 9.5 1.8 1 23 294 316 294 317 0.87 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF142-203 - 1524 2.6e-18 65.1 323.6 12 36 0.0062 18 6.5 5.0 1 23 322 344 322 345 0.88 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF142-203 - 1524 2.6e-18 65.1 323.6 13 36 0.00045 1.3 10.0 1.8 2 24 350 372 349 372 0.84 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF142-203 - 1524 2.6e-18 65.1 323.6 14 36 0.067 2e+02 3.2 1.4 1 19 381 399 381 401 0.70 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF142-203 - 1524 2.6e-18 65.1 323.6 15 36 0.052 1.6e+02 3.6 2.8 1 24 410 433 410 433 0.88 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF142-203 - 1524 2.6e-18 65.1 323.6 16 36 0.0073 22 6.2 0.5 1 21 673 693 673 694 0.77 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF142-203 - 1524 2.6e-18 65.1 323.6 17 36 2.3e-05 0.068 14.0 0.1 3 22 705 724 703 725 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF142-203 - 1524 2.6e-18 65.1 323.6 18 36 1.4 4.3e+03 -0.9 1.8 1 19 863 881 863 884 0.63 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF142-203 - 1524 2.6e-18 65.1 323.6 19 36 0.0045 14 6.9 1.1 1 20 941 960 941 962 0.88 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF142-203 - 1524 2.6e-18 65.1 323.6 20 36 0.053 1.6e+02 3.6 0.8 2 24 973 995 972 995 0.84 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF142-203 - 1524 2.6e-18 65.1 323.6 21 36 0.084 2.5e+02 2.9 4.4 2 24 1009 1031 1008 1031 0.81 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF142-203 - 1524 2.6e-18 65.1 323.6 22 36 0.003 8.9 7.5 2.3 1 23 1037 1059 1037 1060 0.83 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF142-203 - 1524 2.6e-18 65.1 323.6 23 36 8.5e-05 0.25 12.3 0.4 2 24 1066 1088 1065 1088 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF142-203 - 1524 2.6e-18 65.1 323.6 24 36 1.7 5.1e+03 -1.1 4.5 2 24 1095 1117 1094 1117 0.79 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF142-203 - 1524 2.6e-18 65.1 323.6 25 36 6.1e-06 0.018 15.8 0.4 1 24 1123 1146 1123 1146 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF142-203 - 1524 2.6e-18 65.1 323.6 26 36 0.026 79 4.5 2.6 2 24 1166 1188 1165 1188 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF142-203 - 1524 2.6e-18 65.1 323.6 27 36 0.0024 7.1 7.8 0.1 2 24 1192 1214 1191 1214 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF142-203 - 1524 2.6e-18 65.1 323.6 28 36 0.13 3.9e+02 2.3 0.6 1 24 1217 1240 1217 1240 0.79 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF142-203 - 1524 2.6e-18 65.1 323.6 29 36 0.0075 23 6.2 5.1 2 23 1262 1283 1261 1284 0.88 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF142-203 - 1524 2.6e-18 65.1 323.6 30 36 0.11 3.1e+02 2.6 0.5 1 15 1289 1301 1289 1312 0.73 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF142-203 - 1524 2.6e-18 65.1 323.6 31 36 0.005 15 6.8 4.8 1 23 1317 1339 1317 1340 0.89 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF142-203 - 1524 2.6e-18 65.1 323.6 32 36 0.012 36 5.6 2.3 1 23 1345 1367 1345 1368 0.79 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF142-203 - 1524 2.6e-18 65.1 323.6 33 36 0.0006 1.8 9.6 0.7 1 24 1373 1396 1373 1396 0.86 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF142-203 - 1524 2.6e-18 65.1 323.6 34 36 7.2e-07 0.0021 18.7 1.7 1 23 1402 1424 1402 1425 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF142-203 - 1524 2.6e-18 65.1 323.6 35 36 0.0012 3.5 8.7 1.2 1 23 1430 1452 1430 1453 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF142-203 - 1524 2.6e-18 65.1 323.6 36 36 0.0037 11 7.2 4.4 1 24 1458 1481 1458 1481 0.89 C2H2-type zinc finger zf-H2C2_5 PF13909.6 26 ZNF142-203 - 1524 6.8e-18 64.1 255.9 1 31 0.74 2.2e+03 -1.5 0.5 12 21 39 48 38 49 0.86 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 ZNF142-203 - 1524 6.8e-18 64.1 255.9 2 31 5.2e-06 0.015 15.0 2.4 3 25 58 80 56 81 0.94 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 ZNF142-203 - 1524 6.8e-18 64.1 255.9 3 31 0.25 7.6e+02 0.0 0.1 15 25 104 113 102 114 0.87 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 ZNF142-203 - 1524 6.8e-18 64.1 255.9 4 31 0.02 60 3.5 0.0 6 24 130 148 124 149 0.95 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 ZNF142-203 - 1524 6.8e-18 64.1 255.9 5 31 0.052 1.6e+02 2.2 5.7 1 19 180 198 180 203 0.76 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 ZNF142-203 - 1524 6.8e-18 64.1 255.9 6 31 0.019 57 3.6 0.1 2 10 210 218 209 232 0.81 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 ZNF142-203 - 1524 6.8e-18 64.1 255.9 7 31 1.2e-10 3.6e-07 29.8 0.2 1 26 238 262 238 262 0.96 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 ZNF142-203 - 1524 6.8e-18 64.1 255.9 8 31 0.00047 1.4 8.7 5.8 1 25 266 289 266 290 0.95 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 ZNF142-203 - 1524 6.8e-18 64.1 255.9 9 31 3.6e-08 0.00011 21.9 2.4 1 26 294 318 294 318 0.94 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 ZNF142-203 - 1524 6.8e-18 64.1 255.9 10 31 0.0036 11 5.9 5.6 1 20 322 341 322 346 0.81 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 ZNF142-203 - 1524 6.8e-18 64.1 255.9 11 31 0.0026 7.9 6.3 2.0 3 25 351 373 350 374 0.93 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 ZNF142-203 - 1524 6.8e-18 64.1 255.9 12 31 0.092 2.8e+02 1.4 5.7 1 15 381 395 381 405 0.81 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 ZNF142-203 - 1524 6.8e-18 64.1 255.9 13 31 0.1 3.1e+02 1.2 0.9 2 16 411 425 410 434 0.73 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 ZNF142-203 - 1524 6.8e-18 64.1 255.9 14 31 1.9e-06 0.0058 16.4 0.1 1 21 673 693 673 694 0.95 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 ZNF142-203 - 1524 6.8e-18 64.1 255.9 15 31 6 1.8e+04 -4.5 1.1 1 8 863 870 863 882 0.72 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 ZNF142-203 - 1524 6.8e-18 64.1 255.9 16 31 0.051 1.5e+02 2.2 0.9 1 19 941 959 941 959 0.92 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 ZNF142-203 - 1524 6.8e-18 64.1 255.9 17 31 0.069 2.1e+02 1.8 0.2 3 24 974 995 972 997 0.89 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 ZNF142-203 - 1524 6.8e-18 64.1 255.9 18 31 0.14 4.1e+02 0.9 2.5 3 26 1010 1033 1008 1033 0.89 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 ZNF142-203 - 1524 6.8e-18 64.1 255.9 19 31 8.8e-06 0.026 14.3 1.6 1 26 1037 1061 1037 1061 0.85 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 ZNF142-203 - 1524 6.8e-18 64.1 255.9 20 31 0.49 1.5e+03 -0.9 0.4 12 26 1076 1090 1067 1090 0.79 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 ZNF142-203 - 1524 6.8e-18 64.1 255.9 21 31 0.0017 5 7.0 2.5 2 26 1095 1119 1094 1119 0.90 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 ZNF142-203 - 1524 6.8e-18 64.1 255.9 22 31 4.1 1.2e+04 -3.9 3.2 3 7 1125 1129 1123 1146 0.52 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 ZNF142-203 - 1524 6.8e-18 64.1 255.9 23 31 0.0023 6.8 6.6 0.1 1 24 1217 1240 1217 1242 0.91 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 ZNF142-203 - 1524 6.8e-18 64.1 255.9 24 31 0.00015 0.45 10.3 2.0 3 26 1263 1285 1261 1285 0.94 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 ZNF142-203 - 1524 6.8e-18 64.1 255.9 25 31 4.3e-05 0.13 12.1 2.8 1 26 1289 1313 1289 1313 0.99 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 ZNF142-203 - 1524 6.8e-18 64.1 255.9 26 31 0.00039 1.2 9.0 4.6 1 25 1317 1340 1317 1341 0.95 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 ZNF142-203 - 1524 6.8e-18 64.1 255.9 27 31 9e-07 0.0027 17.4 3.2 2 26 1346 1369 1345 1369 0.95 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 ZNF142-203 - 1524 6.8e-18 64.1 255.9 28 31 0.0021 6.4 6.6 1.3 1 24 1373 1396 1373 1397 0.87 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 ZNF142-203 - 1524 6.8e-18 64.1 255.9 29 31 0.12 3.5e+02 1.1 0.2 16 25 1417 1425 1402 1426 0.80 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 ZNF142-203 - 1524 6.8e-18 64.1 255.9 30 31 1.8 5.3e+03 -2.7 0.2 15 25 1444 1453 1441 1453 0.82 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 ZNF142-203 - 1524 6.8e-18 64.1 255.9 31 31 2e-05 0.061 13.1 2.1 1 24 1458 1481 1458 1482 0.91 C2H2-type zinc-finger domain # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF142-203.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF142-203.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF142-203.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF142-203.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF142-203.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:00:16 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF142-204.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF142-204.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF142-204.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF142-204.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF142-204.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:00:16 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZNF142-205 - 1687 1.3e-45 151.8 292.9 1 37 0.57 1.7e+03 -0.3 3.9 15 26 163 174 159 174 0.85 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF142-205 - 1687 1.3e-45 151.8 292.9 2 37 0.00095 2.8 8.5 2.0 1 26 177 202 175 202 0.78 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF142-205 - 1687 1.3e-45 151.8 292.9 3 37 9.9e-05 0.3 11.6 2.0 2 23 206 227 205 229 0.87 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF142-205 - 1687 1.3e-45 151.8 292.9 4 37 9.6e-05 0.29 11.7 0.1 1 24 233 262 233 263 0.72 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF142-205 - 1687 1.3e-45 151.8 292.9 5 37 0.088 2.6e+02 2.3 0.0 1 17 267 288 267 297 0.71 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF142-205 - 1687 1.3e-45 151.8 292.9 6 37 0.067 2e+02 2.7 1.1 3 25 304 328 302 329 0.85 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF142-205 - 1687 1.3e-45 151.8 292.9 7 37 0.61 1.8e+03 -0.4 5.4 9 25 337 353 333 354 0.69 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF142-205 - 1687 1.3e-45 151.8 292.9 8 37 0.00073 2.2 8.9 1.1 2 24 358 381 357 383 0.88 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF142-205 - 1687 1.3e-45 151.8 292.9 9 37 4.7e-05 0.14 12.6 1.8 2 26 387 412 386 412 0.87 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF142-205 - 1687 1.3e-45 151.8 292.9 10 37 1.2e-08 3.5e-05 24.0 3.0 2 23 416 437 416 439 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF142-205 - 1687 1.3e-45 151.8 292.9 11 37 9.3e-06 0.028 14.9 0.9 2 25 444 467 443 467 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF142-205 - 1687 1.3e-45 151.8 292.9 12 37 1.5e-05 0.044 14.2 3.5 2 23 472 493 471 496 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF142-205 - 1687 1.3e-45 151.8 292.9 13 37 0.03 89 3.8 1.0 2 25 500 522 499 523 0.89 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF142-205 - 1687 1.3e-45 151.8 292.9 14 37 6e-05 0.18 12.3 3.6 2 23 527 552 526 555 0.89 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF142-205 - 1687 1.3e-45 151.8 292.9 15 37 0.0093 28 5.4 2.0 5 24 562 582 559 584 0.85 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF142-205 - 1687 1.3e-45 151.8 292.9 16 37 0.22 6.6e+02 1.0 0.1 12 21 832 842 830 845 0.76 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF142-205 - 1687 1.3e-45 151.8 292.9 17 37 0.011 34 5.1 0.1 14 26 865 877 850 877 0.77 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF142-205 - 1687 1.3e-45 151.8 292.9 18 37 1.2 3.7e+03 -1.3 2.9 7 21 1017 1032 1016 1036 0.78 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF142-205 - 1687 1.3e-45 151.8 292.9 19 37 0.86 2.6e+03 -0.8 1.3 14 22 1103 1111 1096 1113 0.74 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF142-205 - 1687 1.3e-45 151.8 292.9 20 37 0.74 2.2e+03 -0.6 0.2 15 23 1135 1143 1120 1144 0.84 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF142-205 - 1687 1.3e-45 151.8 292.9 21 37 0.0029 8.8 7.0 0.9 1 25 1149 1181 1149 1182 0.87 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF142-205 - 1687 1.3e-45 151.8 292.9 22 37 3.3e-08 0.0001 22.6 2.0 3 25 1187 1210 1186 1211 0.89 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF142-205 - 1687 1.3e-45 151.8 292.9 23 37 1.1e-05 0.034 14.6 0.0 2 26 1215 1239 1214 1239 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF142-205 - 1687 1.3e-45 151.8 292.9 24 37 0.00083 2.5 8.7 1.6 2 23 1243 1265 1242 1266 0.80 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF142-205 - 1687 1.3e-45 151.8 292.9 25 37 0.018 55 4.4 0.2 3 25 1273 1296 1271 1297 0.82 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF142-205 - 1687 1.3e-45 151.8 292.9 26 37 0.93 2.8e+03 -0.9 0.2 2 20 1301 1333 1300 1335 0.50 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF142-205 - 1687 1.3e-45 151.8 292.9 27 37 0.029 88 3.8 0.2 2 24 1343 1363 1342 1365 0.75 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF142-205 - 1687 1.3e-45 151.8 292.9 28 37 0.1 3.1e+02 2.1 0.4 3 23 1370 1388 1368 1390 0.69 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF142-205 - 1687 1.3e-45 151.8 292.9 29 37 0.0032 9.5 6.8 0.2 2 24 1395 1433 1394 1435 0.73 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF142-205 - 1687 1.3e-45 151.8 292.9 30 37 4e-05 0.12 12.9 0.8 4 26 1441 1463 1439 1463 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF142-205 - 1687 1.3e-45 151.8 292.9 31 37 2.5e-08 7.3e-05 23.0 3.8 4 23 1469 1488 1467 1490 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF142-205 - 1687 1.3e-45 151.8 292.9 32 37 3.2e-07 0.00094 19.5 5.9 2 25 1495 1518 1494 1518 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF142-205 - 1687 1.3e-45 151.8 292.9 33 37 2.6e-09 7.7e-06 26.1 4.0 2 25 1523 1546 1522 1547 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF142-205 - 1687 1.3e-45 151.8 292.9 34 37 0.00017 0.5 10.9 0.2 1 26 1550 1576 1550 1576 0.84 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF142-205 - 1687 1.3e-45 151.8 292.9 35 37 1.5e-06 0.0046 17.3 2.1 2 24 1580 1602 1580 1603 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF142-205 - 1687 1.3e-45 151.8 292.9 36 37 0.00082 2.5 8.7 3.4 2 25 1608 1631 1607 1632 0.89 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF142-205 - 1687 1.3e-45 151.8 292.9 37 37 0.41 1.2e+03 0.2 0.3 3 11 1637 1645 1636 1649 0.86 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZNF142-205 - 1687 1.4e-27 94.6 339.9 1 36 0.00048 1.4 9.5 9.3 1 23 163 185 163 185 0.95 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF142-205 - 1687 1.4e-27 94.6 339.9 2 36 3.6e-06 0.011 16.2 1.2 2 21 192 211 191 212 0.93 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF142-205 - 1687 1.4e-27 94.6 339.9 3 36 0.0072 22 5.8 3.3 1 23 219 242 219 242 0.95 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF142-205 - 1687 1.4e-27 94.6 339.9 4 36 0.00015 0.45 11.1 0.2 1 23 253 275 253 275 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF142-205 - 1687 1.4e-27 94.6 339.9 5 36 0.063 1.9e+02 2.8 0.2 2 23 287 311 286 311 0.91 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF142-205 - 1687 1.4e-27 94.6 339.9 6 36 0.24 7.2e+02 1.0 3.1 4 23 319 340 317 340 0.88 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF142-205 - 1687 1.4e-27 94.6 339.9 7 36 0.0066 20 5.9 10.0 1 23 343 366 343 366 0.95 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF142-205 - 1687 1.4e-27 94.6 339.9 8 36 0.14 4.2e+02 1.7 0.2 2 23 373 395 372 395 0.89 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF142-205 - 1687 1.4e-27 94.6 339.9 9 36 0.00015 0.45 11.1 1.8 1 23 401 423 401 423 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF142-205 - 1687 1.4e-27 94.6 339.9 10 36 9.5e-05 0.28 11.7 5.1 1 23 429 451 429 451 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF142-205 - 1687 1.4e-27 94.6 339.9 11 36 2.9e-05 0.085 13.3 3.1 1 23 457 479 457 479 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF142-205 - 1687 1.4e-27 94.6 339.9 12 36 0.0031 9.2 6.9 6.3 1 23 485 507 485 507 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF142-205 - 1687 1.4e-27 94.6 339.9 13 36 5.5e-05 0.17 12.4 2.8 2 23 513 535 512 536 0.94 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF142-205 - 1687 1.4e-27 94.6 339.9 14 36 0.031 93 3.8 1.8 1 19 544 562 544 564 0.87 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF142-205 - 1687 1.4e-27 94.6 339.9 15 36 0.36 1.1e+03 0.4 2.3 1 18 573 590 573 596 0.68 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF142-205 - 1687 1.4e-27 94.6 339.9 16 36 0.00072 2.1 8.9 0.8 1 22 836 857 836 857 0.95 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF142-205 - 1687 1.4e-27 94.6 339.9 17 36 4.1e-05 0.12 12.8 0.1 3 21 868 886 867 887 0.94 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF142-205 - 1687 1.4e-27 94.6 339.9 18 36 0.17 5.1e+02 1.5 1.5 1 20 1026 1045 1026 1047 0.92 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF142-205 - 1687 1.4e-27 94.6 339.9 19 36 0.0016 4.7 7.9 1.0 1 21 1104 1124 1104 1125 0.94 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF142-205 - 1687 1.4e-27 94.6 339.9 20 36 0.0093 28 5.4 0.6 3 23 1137 1158 1135 1158 0.95 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF142-205 - 1687 1.4e-27 94.6 339.9 21 36 0.00083 2.5 8.7 5.7 2 23 1172 1194 1171 1194 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF142-205 - 1687 1.4e-27 94.6 339.9 22 36 1.9e-05 0.057 13.9 3.6 1 23 1200 1222 1200 1222 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF142-205 - 1687 1.4e-27 94.6 339.9 23 36 9.9e-05 0.3 11.6 0.5 2 23 1229 1251 1228 1251 0.95 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF142-205 - 1687 1.4e-27 94.6 339.9 24 36 0.5 1.5e+03 -0.0 5.2 2 23 1258 1280 1257 1280 0.93 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF142-205 - 1687 1.4e-27 94.6 339.9 25 36 0.0011 3.3 8.4 0.2 1 23 1286 1309 1286 1309 0.95 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF142-205 - 1687 1.4e-27 94.6 339.9 26 36 0.021 63 4.3 2.7 3 23 1330 1351 1328 1351 0.95 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF142-205 - 1687 1.4e-27 94.6 339.9 27 36 0.011 34 5.2 0.0 2 23 1355 1377 1354 1377 0.94 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF142-205 - 1687 1.4e-27 94.6 339.9 28 36 0.032 96 3.7 0.4 1 23 1380 1403 1380 1403 0.93 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF142-205 - 1687 1.4e-27 94.6 339.9 29 36 2.7 8.2e+03 -2.3 6.8 3 23 1426 1446 1424 1446 0.91 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF142-205 - 1687 1.4e-27 94.6 339.9 30 36 0.0013 3.9 8.1 1.3 1 23 1452 1474 1452 1474 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF142-205 - 1687 1.4e-27 94.6 339.9 31 36 6.7e-05 0.2 12.2 5.3 1 23 1480 1502 1480 1502 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF142-205 - 1687 1.4e-27 94.6 339.9 32 36 0.009 27 5.5 2.2 1 23 1508 1530 1508 1530 0.95 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF142-205 - 1687 1.4e-27 94.6 339.9 33 36 2.6e-06 0.0077 16.6 0.8 1 23 1536 1559 1536 1559 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF142-205 - 1687 1.4e-27 94.6 339.9 34 36 4.9e-08 0.00015 22.1 2.0 1 23 1565 1587 1565 1587 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF142-205 - 1687 1.4e-27 94.6 339.9 35 36 0.00014 0.42 11.2 0.9 1 23 1593 1615 1593 1615 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF142-205 - 1687 1.4e-27 94.6 339.9 36 36 0.0081 24 5.6 4.3 1 23 1621 1643 1621 1644 0.94 Zinc finger, C2H2 type zf-H2C2_5 PF13909.6 26 ZNF142-205 - 1687 8.9e-21 73.3 242.4 1 30 0.82 2.5e+03 -1.6 0.5 12 21 202 211 201 212 0.86 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 ZNF142-205 - 1687 8.9e-21 73.3 242.4 2 30 5.8e-06 0.017 14.8 2.4 3 25 221 243 219 244 0.94 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 ZNF142-205 - 1687 8.9e-21 73.3 242.4 3 30 0.28 8.4e+02 -0.1 0.1 15 25 267 276 265 277 0.87 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 ZNF142-205 - 1687 8.9e-21 73.3 242.4 4 30 0.022 67 3.4 0.0 6 24 293 311 287 312 0.95 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 ZNF142-205 - 1687 8.9e-21 73.3 242.4 5 30 0.058 1.7e+02 2.1 5.7 1 19 343 361 343 366 0.76 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 ZNF142-205 - 1687 8.9e-21 73.3 242.4 6 30 0.021 63 3.5 0.1 2 10 373 381 372 395 0.81 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 ZNF142-205 - 1687 8.9e-21 73.3 242.4 7 30 1.3e-10 4e-07 29.7 0.2 1 26 401 425 401 425 0.96 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 ZNF142-205 - 1687 8.9e-21 73.3 242.4 8 30 0.00052 1.6 8.6 5.8 1 25 429 452 429 453 0.95 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 ZNF142-205 - 1687 8.9e-21 73.3 242.4 9 30 4.1e-08 0.00012 21.7 2.4 1 26 457 481 457 481 0.94 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 ZNF142-205 - 1687 8.9e-21 73.3 242.4 10 30 0.004 12 5.8 5.6 1 20 485 504 485 509 0.81 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 ZNF142-205 - 1687 8.9e-21 73.3 242.4 11 30 0.003 8.8 6.2 2.0 3 25 514 536 513 537 0.93 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 ZNF142-205 - 1687 8.9e-21 73.3 242.4 12 30 0.1 3.1e+02 1.3 5.7 1 15 544 558 544 568 0.81 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 ZNF142-205 - 1687 8.9e-21 73.3 242.4 13 30 0.12 3.5e+02 1.1 0.9 2 16 574 588 573 597 0.73 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 ZNF142-205 - 1687 8.9e-21 73.3 242.4 14 30 2.2e-06 0.0065 16.2 0.1 1 21 836 856 836 857 0.95 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 ZNF142-205 - 1687 8.9e-21 73.3 242.4 15 30 0.057 1.7e+02 2.1 0.9 1 19 1104 1122 1104 1122 0.92 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 ZNF142-205 - 1687 8.9e-21 73.3 242.4 16 30 0.077 2.3e+02 1.7 0.2 3 24 1137 1158 1135 1160 0.89 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 ZNF142-205 - 1687 8.9e-21 73.3 242.4 17 30 0.15 4.6e+02 0.7 2.5 3 26 1173 1196 1171 1196 0.89 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 ZNF142-205 - 1687 8.9e-21 73.3 242.4 18 30 9.8e-06 0.029 14.1 1.6 1 26 1200 1224 1200 1224 0.85 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 ZNF142-205 - 1687 8.9e-21 73.3 242.4 19 30 0.55 1.6e+03 -1.1 0.4 12 26 1239 1253 1230 1253 0.79 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 ZNF142-205 - 1687 8.9e-21 73.3 242.4 20 30 0.0019 5.5 6.8 2.5 2 26 1258 1282 1257 1282 0.90 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 ZNF142-205 - 1687 8.9e-21 73.3 242.4 21 30 0.55 1.6e+03 -1.1 0.3 3 7 1288 1292 1286 1309 0.52 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 ZNF142-205 - 1687 8.9e-21 73.3 242.4 22 30 0.0025 7.6 6.4 0.1 1 24 1380 1403 1380 1405 0.91 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 ZNF142-205 - 1687 8.9e-21 73.3 242.4 23 30 0.00017 0.5 10.2 2.0 3 26 1426 1448 1424 1448 0.94 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 ZNF142-205 - 1687 8.9e-21 73.3 242.4 24 30 4.8e-05 0.14 11.9 2.8 1 26 1452 1476 1452 1476 0.99 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 ZNF142-205 - 1687 8.9e-21 73.3 242.4 25 30 0.00043 1.3 8.9 4.6 1 25 1480 1503 1480 1504 0.95 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 ZNF142-205 - 1687 8.9e-21 73.3 242.4 26 30 1e-06 0.003 17.3 3.2 2 26 1509 1532 1508 1532 0.95 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 ZNF142-205 - 1687 8.9e-21 73.3 242.4 27 30 0.0024 7.1 6.5 1.3 1 24 1536 1559 1536 1560 0.87 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 ZNF142-205 - 1687 8.9e-21 73.3 242.4 28 30 0.13 3.9e+02 0.9 0.2 16 25 1580 1588 1565 1589 0.80 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 ZNF142-205 - 1687 8.9e-21 73.3 242.4 29 30 2 5.9e+03 -2.9 0.2 15 25 1607 1616 1604 1616 0.82 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 ZNF142-205 - 1687 8.9e-21 73.3 242.4 30 30 2.3e-05 0.068 12.9 2.1 1 24 1621 1644 1621 1645 0.91 C2H2-type zinc-finger domain zf-C2H2_4 PF13894.6 24 ZNF142-205 - 1687 2.4e-16 59.0 325.4 1 36 0.099 3e+02 2.7 8.5 1 23 163 185 163 186 0.91 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF142-205 - 1687 2.4e-16 59.0 325.4 2 36 3.9e-05 0.12 13.3 0.8 2 22 192 212 191 213 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF142-205 - 1687 2.4e-16 59.0 325.4 3 36 0.00099 3 8.9 3.3 1 24 219 242 219 242 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF142-205 - 1687 2.4e-16 59.0 325.4 4 36 7e-06 0.021 15.6 0.4 1 23 253 275 253 276 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF142-205 - 1687 2.4e-16 59.0 325.4 5 36 1.1 3.3e+03 -0.6 0.2 6 24 293 311 287 311 0.79 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF142-205 - 1687 2.4e-16 59.0 325.4 6 36 0.1 3.1e+02 2.7 2.4 2 23 317 340 316 341 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF142-205 - 1687 2.4e-16 59.0 325.4 7 36 0.029 87 4.4 7.3 1 21 343 363 343 364 0.75 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF142-205 - 1687 2.4e-16 59.0 325.4 8 36 0.0042 13 7.0 0.2 2 24 373 395 372 395 0.76 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF142-205 - 1687 2.4e-16 59.0 325.4 9 36 0.00072 2.1 9.4 1.7 1 23 401 423 401 424 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF142-205 - 1687 2.4e-16 59.0 325.4 10 36 0.0009 2.7 9.1 4.5 1 23 429 451 429 452 0.79 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF142-205 - 1687 2.4e-16 59.0 325.4 11 36 0.00076 2.3 9.3 1.8 1 23 457 479 457 480 0.87 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF142-205 - 1687 2.4e-16 59.0 325.4 12 36 0.0069 21 6.3 5.0 1 23 485 507 485 508 0.88 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF142-205 - 1687 2.4e-16 59.0 325.4 13 36 0.0005 1.5 9.9 1.8 2 24 513 535 512 535 0.84 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF142-205 - 1687 2.4e-16 59.0 325.4 14 36 0.075 2.2e+02 3.1 1.4 1 19 544 562 544 564 0.70 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF142-205 - 1687 2.4e-16 59.0 325.4 15 36 0.058 1.7e+02 3.4 2.8 1 24 573 596 573 596 0.88 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF142-205 - 1687 2.4e-16 59.0 325.4 16 36 0.0082 24 6.1 0.5 1 21 836 856 836 857 0.77 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF142-205 - 1687 2.4e-16 59.0 325.4 17 36 2.5e-05 0.076 13.9 0.1 3 22 868 887 866 888 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF142-205 - 1687 2.4e-16 59.0 325.4 18 36 1.6 4.8e+03 -1.1 1.8 1 19 1026 1044 1026 1047 0.63 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF142-205 - 1687 2.4e-16 59.0 325.4 19 36 0.0051 15 6.7 1.1 1 20 1104 1123 1104 1125 0.88 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF142-205 - 1687 2.4e-16 59.0 325.4 20 36 0.059 1.8e+02 3.4 0.8 2 24 1136 1158 1135 1158 0.84 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF142-205 - 1687 2.4e-16 59.0 325.4 21 36 0.094 2.8e+02 2.8 4.4 2 24 1172 1194 1171 1194 0.81 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF142-205 - 1687 2.4e-16 59.0 325.4 22 36 0.0033 10 7.3 2.3 1 23 1200 1222 1200 1223 0.83 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF142-205 - 1687 2.4e-16 59.0 325.4 23 36 9.5e-05 0.28 12.1 0.4 2 24 1229 1251 1228 1251 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF142-205 - 1687 2.4e-16 59.0 325.4 24 36 1.9 5.7e+03 -1.3 4.5 2 24 1258 1280 1257 1280 0.79 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF142-205 - 1687 2.4e-16 59.0 325.4 25 36 6.9e-06 0.02 15.7 0.4 1 24 1286 1309 1286 1309 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF142-205 - 1687 2.4e-16 59.0 325.4 26 36 0.029 88 4.4 2.6 2 24 1329 1351 1328 1351 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF142-205 - 1687 2.4e-16 59.0 325.4 27 36 0.0027 8 7.6 0.1 2 24 1355 1377 1354 1377 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF142-205 - 1687 2.4e-16 59.0 325.4 28 36 0.15 4.4e+02 2.2 0.6 1 24 1380 1403 1380 1403 0.79 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF142-205 - 1687 2.4e-16 59.0 325.4 29 36 0.0084 25 6.0 5.1 2 23 1425 1446 1424 1447 0.88 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF142-205 - 1687 2.4e-16 59.0 325.4 30 36 0.12 3.5e+02 2.5 0.5 1 15 1452 1464 1452 1475 0.73 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF142-205 - 1687 2.4e-16 59.0 325.4 31 36 0.0056 17 6.6 4.8 1 23 1480 1502 1480 1503 0.89 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF142-205 - 1687 2.4e-16 59.0 325.4 32 36 0.014 40 5.4 2.3 1 23 1508 1530 1508 1531 0.79 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF142-205 - 1687 2.4e-16 59.0 325.4 33 36 0.00068 2 9.5 0.7 1 24 1536 1559 1536 1559 0.86 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF142-205 - 1687 2.4e-16 59.0 325.4 34 36 8.1e-07 0.0024 18.6 1.7 1 23 1565 1587 1565 1588 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF142-205 - 1687 2.4e-16 59.0 325.4 35 36 0.0013 3.9 8.6 1.2 1 23 1593 1615 1593 1616 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF142-205 - 1687 2.4e-16 59.0 325.4 36 36 0.0041 12 7.0 4.4 1 24 1621 1644 1621 1644 0.89 C2H2-type zinc finger # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF142-205.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF142-205.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF142-205.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF142-205.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF142-205.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:00:17 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF142-206.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF142-206.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF142-206.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF142-206.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF142-206.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:00:17 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZNF142-207 - 1524 6.6e-47 155.9 292.2 1 37 1.8 5.5e+03 -1.9 3.7 17 26 2 11 1 11 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF142-207 - 1524 6.6e-47 155.9 292.2 2 37 0.00085 2.5 8.7 2.0 1 26 14 39 12 39 0.78 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF142-207 - 1524 6.6e-47 155.9 292.2 3 37 8.9e-05 0.27 11.8 2.0 2 23 43 64 42 66 0.87 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF142-207 - 1524 6.6e-47 155.9 292.2 4 37 8.6e-05 0.26 11.8 0.1 1 24 70 99 70 100 0.72 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF142-207 - 1524 6.6e-47 155.9 292.2 5 37 0.079 2.4e+02 2.4 0.0 1 17 104 125 104 134 0.71 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF142-207 - 1524 6.6e-47 155.9 292.2 6 37 0.06 1.8e+02 2.8 1.1 3 25 141 165 139 166 0.85 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF142-207 - 1524 6.6e-47 155.9 292.2 7 37 0.55 1.6e+03 -0.2 5.4 9 25 174 190 170 191 0.69 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF142-207 - 1524 6.6e-47 155.9 292.2 8 37 0.00065 2 9.0 1.1 2 24 195 218 194 220 0.88 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF142-207 - 1524 6.6e-47 155.9 292.2 9 37 4.2e-05 0.13 12.8 1.8 2 26 224 249 223 249 0.87 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF142-207 - 1524 6.6e-47 155.9 292.2 10 37 1e-08 3.1e-05 24.2 3.0 2 23 253 274 253 276 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF142-207 - 1524 6.6e-47 155.9 292.2 11 37 8.4e-06 0.025 15.0 0.9 2 25 281 304 280 304 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF142-207 - 1524 6.6e-47 155.9 292.2 12 37 1.3e-05 0.04 14.4 3.5 2 23 309 330 308 333 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF142-207 - 1524 6.6e-47 155.9 292.2 13 37 0.027 80 3.9 1.0 2 25 337 359 336 360 0.89 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF142-207 - 1524 6.6e-47 155.9 292.2 14 37 5.3e-05 0.16 12.5 3.6 2 23 364 389 363 392 0.89 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF142-207 - 1524 6.6e-47 155.9 292.2 15 37 0.0083 25 5.5 2.0 5 24 399 419 396 421 0.85 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF142-207 - 1524 6.6e-47 155.9 292.2 16 37 0.2 5.9e+02 1.2 0.1 12 21 669 679 667 682 0.76 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF142-207 - 1524 6.6e-47 155.9 292.2 17 37 0.01 30 5.3 0.1 14 26 702 714 687 714 0.77 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF142-207 - 1524 6.6e-47 155.9 292.2 18 37 1.1 3.3e+03 -1.2 2.9 7 21 854 869 853 873 0.78 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF142-207 - 1524 6.6e-47 155.9 292.2 19 37 0.77 2.3e+03 -0.7 1.3 14 22 940 948 933 950 0.74 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF142-207 - 1524 6.6e-47 155.9 292.2 20 37 0.66 2e+03 -0.5 0.2 15 23 972 980 957 981 0.84 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF142-207 - 1524 6.6e-47 155.9 292.2 21 37 0.0026 7.8 7.1 0.9 1 25 986 1018 986 1019 0.87 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF142-207 - 1524 6.6e-47 155.9 292.2 22 37 3e-08 8.9e-05 22.7 2.0 3 25 1024 1047 1023 1048 0.89 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF142-207 - 1524 6.6e-47 155.9 292.2 23 37 1e-05 0.031 14.7 0.0 2 26 1052 1076 1051 1076 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF142-207 - 1524 6.6e-47 155.9 292.2 24 37 0.00074 2.2 8.9 1.6 2 23 1080 1102 1079 1103 0.80 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF142-207 - 1524 6.6e-47 155.9 292.2 25 37 0.017 49 4.6 0.2 3 25 1110 1133 1108 1134 0.82 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF142-207 - 1524 6.6e-47 155.9 292.2 26 37 0.83 2.5e+03 -0.8 0.2 2 20 1138 1170 1137 1172 0.51 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF142-207 - 1524 6.6e-47 155.9 292.2 27 37 0.026 78 4.0 0.2 2 24 1180 1200 1179 1202 0.75 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF142-207 - 1524 6.6e-47 155.9 292.2 28 37 0.093 2.8e+02 2.2 0.4 3 23 1207 1225 1205 1227 0.69 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF142-207 - 1524 6.6e-47 155.9 292.2 29 37 0.0028 8.5 7.0 0.2 2 24 1232 1270 1231 1272 0.73 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF142-207 - 1524 6.6e-47 155.9 292.2 30 37 3.6e-05 0.11 13.0 0.8 4 26 1278 1300 1276 1300 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF142-207 - 1524 6.6e-47 155.9 292.2 31 37 2.2e-08 6.6e-05 23.2 3.8 4 23 1306 1325 1304 1327 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF142-207 - 1524 6.6e-47 155.9 292.2 32 37 2.8e-07 0.00084 19.7 5.9 2 25 1332 1355 1331 1355 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF142-207 - 1524 6.6e-47 155.9 292.2 33 37 2.3e-09 6.9e-06 26.3 4.0 2 25 1360 1383 1359 1384 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF142-207 - 1524 6.6e-47 155.9 292.2 34 37 0.00015 0.45 11.1 0.2 1 26 1387 1413 1387 1413 0.84 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF142-207 - 1524 6.6e-47 155.9 292.2 35 37 1.4e-06 0.0041 17.5 2.1 2 24 1417 1439 1417 1440 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF142-207 - 1524 6.6e-47 155.9 292.2 36 37 0.00074 2.2 8.9 3.4 2 25 1445 1468 1444 1469 0.89 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF142-207 - 1524 6.6e-47 155.9 292.2 37 37 0.33 9.8e+02 0.5 0.2 3 11 1474 1482 1473 1487 0.86 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZNF142-207 - 1524 1.7e-29 100.6 338.0 1 36 0.00027 0.8 10.3 7.4 3 23 2 22 1 22 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF142-207 - 1524 1.7e-29 100.6 338.0 2 36 3.3e-06 0.0097 16.3 1.2 2 21 29 48 28 49 0.93 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF142-207 - 1524 1.7e-29 100.6 338.0 3 36 0.0065 19 5.9 3.3 1 23 56 79 56 79 0.95 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF142-207 - 1524 1.7e-29 100.6 338.0 4 36 0.00013 0.4 11.2 0.2 1 23 90 112 90 112 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF142-207 - 1524 1.7e-29 100.6 338.0 5 36 0.057 1.7e+02 3.0 0.2 2 23 124 148 123 148 0.91 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF142-207 - 1524 1.7e-29 100.6 338.0 6 36 0.21 6.4e+02 1.1 3.1 4 23 156 177 154 177 0.88 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF142-207 - 1524 1.7e-29 100.6 338.0 7 36 0.0059 18 6.1 10.0 1 23 180 203 180 203 0.95 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF142-207 - 1524 1.7e-29 100.6 338.0 8 36 0.12 3.7e+02 1.9 0.2 2 23 210 232 209 232 0.89 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF142-207 - 1524 1.7e-29 100.6 338.0 9 36 0.00013 0.4 11.2 1.8 1 23 238 260 238 260 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF142-207 - 1524 1.7e-29 100.6 338.0 10 36 8.5e-05 0.25 11.9 5.1 1 23 266 288 266 288 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF142-207 - 1524 1.7e-29 100.6 338.0 11 36 2.6e-05 0.076 13.5 3.1 1 23 294 316 294 316 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF142-207 - 1524 1.7e-29 100.6 338.0 12 36 0.0027 8.2 7.1 6.3 1 23 322 344 322 344 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF142-207 - 1524 1.7e-29 100.6 338.0 13 36 4.9e-05 0.15 12.6 2.8 2 23 350 372 349 373 0.94 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF142-207 - 1524 1.7e-29 100.6 338.0 14 36 0.028 83 3.9 1.8 1 19 381 399 381 401 0.87 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF142-207 - 1524 1.7e-29 100.6 338.0 15 36 0.32 9.6e+02 0.6 2.3 1 18 410 427 410 433 0.68 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF142-207 - 1524 1.7e-29 100.6 338.0 16 36 0.00064 1.9 9.1 0.8 1 22 673 694 673 694 0.95 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF142-207 - 1524 1.7e-29 100.6 338.0 17 36 3.7e-05 0.11 13.0 0.1 3 21 705 723 704 724 0.94 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF142-207 - 1524 1.7e-29 100.6 338.0 18 36 0.15 4.5e+02 1.6 1.5 1 20 863 882 863 884 0.92 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF142-207 - 1524 1.7e-29 100.6 338.0 19 36 0.0014 4.2 8.0 1.0 1 21 941 961 941 962 0.94 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF142-207 - 1524 1.7e-29 100.6 338.0 20 36 0.0083 25 5.6 0.6 3 23 974 995 972 995 0.95 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF142-207 - 1524 1.7e-29 100.6 338.0 21 36 0.00074 2.2 8.9 5.7 2 23 1009 1031 1008 1031 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF142-207 - 1524 1.7e-29 100.6 338.0 22 36 1.7e-05 0.051 14.0 3.6 1 23 1037 1059 1037 1059 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF142-207 - 1524 1.7e-29 100.6 338.0 23 36 8.9e-05 0.27 11.8 0.5 2 23 1066 1088 1065 1088 0.95 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF142-207 - 1524 1.7e-29 100.6 338.0 24 36 0.45 1.3e+03 0.1 5.2 2 23 1095 1117 1094 1117 0.93 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF142-207 - 1524 1.7e-29 100.6 338.0 25 36 0.00098 2.9 8.5 0.2 1 23 1123 1146 1123 1146 0.95 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF142-207 - 1524 1.7e-29 100.6 338.0 26 36 0.019 56 4.5 2.7 3 23 1167 1188 1165 1188 0.95 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF142-207 - 1524 1.7e-29 100.6 338.0 27 36 0.01 30 5.3 0.0 2 23 1192 1214 1191 1214 0.94 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF142-207 - 1524 1.7e-29 100.6 338.0 28 36 0.029 86 3.9 0.4 1 23 1217 1240 1217 1240 0.93 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF142-207 - 1524 1.7e-29 100.6 338.0 29 36 2.4 7.3e+03 -2.2 6.8 3 23 1263 1283 1261 1283 0.91 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF142-207 - 1524 1.7e-29 100.6 338.0 30 36 0.0012 3.5 8.3 1.3 1 23 1289 1311 1289 1311 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF142-207 - 1524 1.7e-29 100.6 338.0 31 36 6e-05 0.18 12.3 5.3 1 23 1317 1339 1317 1339 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF142-207 - 1524 1.7e-29 100.6 338.0 32 36 0.0081 24 5.6 2.2 1 23 1345 1367 1345 1367 0.95 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF142-207 - 1524 1.7e-29 100.6 338.0 33 36 2.3e-06 0.0069 16.8 0.8 1 23 1373 1396 1373 1396 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF142-207 - 1524 1.7e-29 100.6 338.0 34 36 4.4e-08 0.00013 22.2 2.0 1 23 1402 1424 1402 1424 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF142-207 - 1524 1.7e-29 100.6 338.0 35 36 0.00013 0.38 11.3 0.9 1 23 1430 1452 1430 1452 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF142-207 - 1524 1.7e-29 100.6 338.0 36 36 0.0073 22 5.8 4.3 1 23 1458 1480 1458 1481 0.94 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZNF142-207 - 1524 2.6e-18 65.1 323.6 1 36 0.051 1.5e+02 3.6 6.7 3 23 2 22 1 23 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF142-207 - 1524 2.6e-18 65.1 323.6 2 36 3.5e-05 0.1 13.5 0.8 2 22 29 49 28 50 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF142-207 - 1524 2.6e-18 65.1 323.6 3 36 0.00088 2.6 9.1 3.3 1 24 56 79 56 79 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF142-207 - 1524 2.6e-18 65.1 323.6 4 36 6.2e-06 0.019 15.8 0.4 1 23 90 112 90 113 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF142-207 - 1524 2.6e-18 65.1 323.6 5 36 1 3e+03 -0.4 0.2 6 24 130 148 124 148 0.79 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF142-207 - 1524 2.6e-18 65.1 323.6 6 36 0.093 2.8e+02 2.8 2.4 2 23 154 177 153 178 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF142-207 - 1524 2.6e-18 65.1 323.6 7 36 0.026 78 4.5 7.3 1 21 180 200 180 201 0.75 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF142-207 - 1524 2.6e-18 65.1 323.6 8 36 0.0038 11 7.1 0.2 2 24 210 232 209 232 0.76 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF142-207 - 1524 2.6e-18 65.1 323.6 9 36 0.00064 1.9 9.5 1.7 1 23 238 260 238 261 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF142-207 - 1524 2.6e-18 65.1 323.6 10 36 0.0008 2.4 9.2 4.5 1 23 266 288 266 289 0.79 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF142-207 - 1524 2.6e-18 65.1 323.6 11 36 0.00068 2 9.5 1.8 1 23 294 316 294 317 0.87 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF142-207 - 1524 2.6e-18 65.1 323.6 12 36 0.0062 18 6.5 5.0 1 23 322 344 322 345 0.88 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF142-207 - 1524 2.6e-18 65.1 323.6 13 36 0.00045 1.3 10.0 1.8 2 24 350 372 349 372 0.84 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF142-207 - 1524 2.6e-18 65.1 323.6 14 36 0.067 2e+02 3.2 1.4 1 19 381 399 381 401 0.70 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF142-207 - 1524 2.6e-18 65.1 323.6 15 36 0.052 1.6e+02 3.6 2.8 1 24 410 433 410 433 0.88 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF142-207 - 1524 2.6e-18 65.1 323.6 16 36 0.0073 22 6.2 0.5 1 21 673 693 673 694 0.77 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF142-207 - 1524 2.6e-18 65.1 323.6 17 36 2.3e-05 0.068 14.0 0.1 3 22 705 724 703 725 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF142-207 - 1524 2.6e-18 65.1 323.6 18 36 1.4 4.3e+03 -0.9 1.8 1 19 863 881 863 884 0.63 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF142-207 - 1524 2.6e-18 65.1 323.6 19 36 0.0045 14 6.9 1.1 1 20 941 960 941 962 0.88 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF142-207 - 1524 2.6e-18 65.1 323.6 20 36 0.053 1.6e+02 3.6 0.8 2 24 973 995 972 995 0.84 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF142-207 - 1524 2.6e-18 65.1 323.6 21 36 0.084 2.5e+02 2.9 4.4 2 24 1009 1031 1008 1031 0.81 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF142-207 - 1524 2.6e-18 65.1 323.6 22 36 0.003 8.9 7.5 2.3 1 23 1037 1059 1037 1060 0.83 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF142-207 - 1524 2.6e-18 65.1 323.6 23 36 8.5e-05 0.25 12.3 0.4 2 24 1066 1088 1065 1088 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF142-207 - 1524 2.6e-18 65.1 323.6 24 36 1.7 5.1e+03 -1.1 4.5 2 24 1095 1117 1094 1117 0.79 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF142-207 - 1524 2.6e-18 65.1 323.6 25 36 6.1e-06 0.018 15.8 0.4 1 24 1123 1146 1123 1146 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF142-207 - 1524 2.6e-18 65.1 323.6 26 36 0.026 79 4.5 2.6 2 24 1166 1188 1165 1188 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF142-207 - 1524 2.6e-18 65.1 323.6 27 36 0.0024 7.1 7.8 0.1 2 24 1192 1214 1191 1214 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF142-207 - 1524 2.6e-18 65.1 323.6 28 36 0.13 3.9e+02 2.3 0.6 1 24 1217 1240 1217 1240 0.79 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF142-207 - 1524 2.6e-18 65.1 323.6 29 36 0.0075 23 6.2 5.1 2 23 1262 1283 1261 1284 0.88 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF142-207 - 1524 2.6e-18 65.1 323.6 30 36 0.11 3.1e+02 2.6 0.5 1 15 1289 1301 1289 1312 0.73 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF142-207 - 1524 2.6e-18 65.1 323.6 31 36 0.005 15 6.8 4.8 1 23 1317 1339 1317 1340 0.89 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF142-207 - 1524 2.6e-18 65.1 323.6 32 36 0.012 36 5.6 2.3 1 23 1345 1367 1345 1368 0.79 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF142-207 - 1524 2.6e-18 65.1 323.6 33 36 0.0006 1.8 9.6 0.7 1 24 1373 1396 1373 1396 0.86 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF142-207 - 1524 2.6e-18 65.1 323.6 34 36 7.2e-07 0.0021 18.7 1.7 1 23 1402 1424 1402 1425 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF142-207 - 1524 2.6e-18 65.1 323.6 35 36 0.0012 3.5 8.7 1.2 1 23 1430 1452 1430 1453 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF142-207 - 1524 2.6e-18 65.1 323.6 36 36 0.0037 11 7.2 4.4 1 24 1458 1481 1458 1481 0.89 C2H2-type zinc finger zf-H2C2_5 PF13909.6 26 ZNF142-207 - 1524 6.8e-18 64.1 255.9 1 31 0.74 2.2e+03 -1.5 0.5 12 21 39 48 38 49 0.86 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 ZNF142-207 - 1524 6.8e-18 64.1 255.9 2 31 5.2e-06 0.015 15.0 2.4 3 25 58 80 56 81 0.94 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 ZNF142-207 - 1524 6.8e-18 64.1 255.9 3 31 0.25 7.6e+02 0.0 0.1 15 25 104 113 102 114 0.87 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 ZNF142-207 - 1524 6.8e-18 64.1 255.9 4 31 0.02 60 3.5 0.0 6 24 130 148 124 149 0.95 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 ZNF142-207 - 1524 6.8e-18 64.1 255.9 5 31 0.052 1.6e+02 2.2 5.7 1 19 180 198 180 203 0.76 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 ZNF142-207 - 1524 6.8e-18 64.1 255.9 6 31 0.019 57 3.6 0.1 2 10 210 218 209 232 0.81 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 ZNF142-207 - 1524 6.8e-18 64.1 255.9 7 31 1.2e-10 3.6e-07 29.8 0.2 1 26 238 262 238 262 0.96 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 ZNF142-207 - 1524 6.8e-18 64.1 255.9 8 31 0.00047 1.4 8.7 5.8 1 25 266 289 266 290 0.95 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 ZNF142-207 - 1524 6.8e-18 64.1 255.9 9 31 3.6e-08 0.00011 21.9 2.4 1 26 294 318 294 318 0.94 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 ZNF142-207 - 1524 6.8e-18 64.1 255.9 10 31 0.0036 11 5.9 5.6 1 20 322 341 322 346 0.81 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 ZNF142-207 - 1524 6.8e-18 64.1 255.9 11 31 0.0026 7.9 6.3 2.0 3 25 351 373 350 374 0.93 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 ZNF142-207 - 1524 6.8e-18 64.1 255.9 12 31 0.092 2.8e+02 1.4 5.7 1 15 381 395 381 405 0.81 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 ZNF142-207 - 1524 6.8e-18 64.1 255.9 13 31 0.1 3.1e+02 1.2 0.9 2 16 411 425 410 434 0.73 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 ZNF142-207 - 1524 6.8e-18 64.1 255.9 14 31 1.9e-06 0.0058 16.4 0.1 1 21 673 693 673 694 0.95 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 ZNF142-207 - 1524 6.8e-18 64.1 255.9 15 31 6 1.8e+04 -4.5 1.1 1 8 863 870 863 882 0.72 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 ZNF142-207 - 1524 6.8e-18 64.1 255.9 16 31 0.051 1.5e+02 2.2 0.9 1 19 941 959 941 959 0.92 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 ZNF142-207 - 1524 6.8e-18 64.1 255.9 17 31 0.069 2.1e+02 1.8 0.2 3 24 974 995 972 997 0.89 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 ZNF142-207 - 1524 6.8e-18 64.1 255.9 18 31 0.14 4.1e+02 0.9 2.5 3 26 1010 1033 1008 1033 0.89 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 ZNF142-207 - 1524 6.8e-18 64.1 255.9 19 31 8.8e-06 0.026 14.3 1.6 1 26 1037 1061 1037 1061 0.85 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 ZNF142-207 - 1524 6.8e-18 64.1 255.9 20 31 0.49 1.5e+03 -0.9 0.4 12 26 1076 1090 1067 1090 0.79 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 ZNF142-207 - 1524 6.8e-18 64.1 255.9 21 31 0.0017 5 7.0 2.5 2 26 1095 1119 1094 1119 0.90 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 ZNF142-207 - 1524 6.8e-18 64.1 255.9 22 31 4.1 1.2e+04 -3.9 3.2 3 7 1125 1129 1123 1146 0.52 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 ZNF142-207 - 1524 6.8e-18 64.1 255.9 23 31 0.0023 6.8 6.6 0.1 1 24 1217 1240 1217 1242 0.91 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 ZNF142-207 - 1524 6.8e-18 64.1 255.9 24 31 0.00015 0.45 10.3 2.0 3 26 1263 1285 1261 1285 0.94 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 ZNF142-207 - 1524 6.8e-18 64.1 255.9 25 31 4.3e-05 0.13 12.1 2.8 1 26 1289 1313 1289 1313 0.99 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 ZNF142-207 - 1524 6.8e-18 64.1 255.9 26 31 0.00039 1.2 9.0 4.6 1 25 1317 1340 1317 1341 0.95 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 ZNF142-207 - 1524 6.8e-18 64.1 255.9 27 31 9e-07 0.0027 17.4 3.2 2 26 1346 1369 1345 1369 0.95 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 ZNF142-207 - 1524 6.8e-18 64.1 255.9 28 31 0.0021 6.4 6.6 1.3 1 24 1373 1396 1373 1397 0.87 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 ZNF142-207 - 1524 6.8e-18 64.1 255.9 29 31 0.12 3.5e+02 1.1 0.2 16 25 1417 1425 1402 1426 0.80 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 ZNF142-207 - 1524 6.8e-18 64.1 255.9 30 31 1.8 5.3e+03 -2.7 0.2 15 25 1444 1453 1441 1453 0.82 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 ZNF142-207 - 1524 6.8e-18 64.1 255.9 31 31 2e-05 0.061 13.1 2.1 1 24 1458 1481 1458 1482 0.91 C2H2-type zinc-finger domain # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF142-207.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF142-207.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF142-207.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF142-207.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF142-207.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:00:17 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZNF143-201 - 610 4.9e-36 121.6 48.8 1 7 0.13 2.5e+02 2.4 0.1 10 25 204 221 193 222 0.82 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF143-201 - 610 4.9e-36 121.6 48.8 2 7 5.6e-09 1.1e-05 25.6 1.0 1 26 225 252 225 252 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF143-201 - 610 4.9e-36 121.6 48.8 3 7 8.6e-11 1.7e-07 31.3 1.4 1 26 255 282 255 282 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF143-201 - 610 4.9e-36 121.6 48.8 4 7 4.5e-11 8.9e-08 32.2 0.5 1 26 285 312 285 312 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF143-201 - 610 4.9e-36 121.6 48.8 5 7 3.5e-07 0.0007 19.9 0.5 5 25 319 341 317 342 0.90 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF143-201 - 610 4.9e-36 121.6 48.8 6 7 3.4e-09 6.7e-06 26.3 0.5 1 25 345 371 345 372 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF143-201 - 610 4.9e-36 121.6 48.8 7 7 0.00025 0.5 10.9 7.6 2 26 376 400 375 400 0.92 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZNF143-201 - 610 1.1e-29 101.2 47.4 1 7 6.2e-06 0.012 16.0 2.8 1 23 209 233 209 233 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF143-201 - 610 1.1e-29 101.2 47.4 2 7 3.6e-07 0.00072 19.9 0.3 1 23 239 263 239 263 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF143-201 - 610 1.1e-29 101.2 47.4 3 7 1.3e-09 2.6e-06 27.6 1.3 1 23 269 293 269 293 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF143-201 - 610 1.1e-29 101.2 47.4 4 7 1.9e-05 0.038 14.5 0.8 1 23 299 323 299 323 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF143-201 - 610 1.1e-29 101.2 47.4 5 7 9e-07 0.0018 18.6 0.1 1 23 329 353 329 353 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF143-201 - 610 1.1e-29 101.2 47.4 6 7 2.7e-05 0.054 14.0 1.4 1 23 359 383 359 383 0.95 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF143-201 - 610 1.1e-29 101.2 47.4 7 7 4.2e-07 0.00083 19.7 2.2 1 23 389 412 389 412 0.98 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZNF143-201 - 610 1.8e-19 68.8 43.9 1 7 0.0002 0.41 11.6 2.0 1 23 209 233 209 234 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF143-201 - 610 1.8e-19 68.8 43.9 2 7 3.2e-06 0.0063 17.3 0.3 1 23 239 263 239 264 0.97 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF143-201 - 610 1.8e-19 68.8 43.9 3 7 1.6e-06 0.0032 18.2 0.6 1 23 269 293 269 294 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF143-201 - 610 1.8e-19 68.8 43.9 4 7 3e-05 0.059 14.2 0.6 1 23 299 323 299 324 0.84 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF143-201 - 610 1.8e-19 68.8 43.9 5 7 0.00013 0.25 12.3 0.1 1 23 329 353 329 354 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF143-201 - 610 1.8e-19 68.8 43.9 6 7 0.0014 2.7 9.1 2.2 1 23 359 383 359 385 0.79 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF143-201 - 610 1.8e-19 68.8 43.9 7 7 6.1e-05 0.12 13.3 1.3 1 24 389 412 389 412 0.95 C2H2-type zinc finger # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF143-201.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF143-201.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF143-201.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF143-201.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF143-201.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:00:18 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZNF143-202 - 607 4.4e-36 121.7 48.8 1 7 0.12 2.5e+02 2.4 0.1 10 25 201 218 190 219 0.82 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF143-202 - 607 4.4e-36 121.7 48.8 2 7 5.5e-09 1.1e-05 25.6 1.0 1 26 222 249 222 249 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF143-202 - 607 4.4e-36 121.7 48.8 3 7 8.5e-11 1.7e-07 31.3 1.4 1 26 252 279 252 279 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF143-202 - 607 4.4e-36 121.7 48.8 4 7 4.4e-11 8.8e-08 32.2 0.5 1 26 282 309 282 309 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF143-202 - 607 4.4e-36 121.7 48.8 5 7 3.5e-07 0.0007 19.9 0.5 5 25 316 338 314 339 0.90 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF143-202 - 607 4.4e-36 121.7 48.8 6 7 3.3e-09 6.6e-06 26.3 0.5 1 25 342 368 342 369 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF143-202 - 607 4.4e-36 121.7 48.8 7 7 0.00025 0.5 10.9 7.6 2 26 373 397 372 397 0.92 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZNF143-202 - 607 1e-29 101.3 47.4 1 7 6.2e-06 0.012 16.0 2.8 1 23 206 230 206 230 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF143-202 - 607 1e-29 101.3 47.4 2 7 3.6e-07 0.00071 19.9 0.3 1 23 236 260 236 260 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF143-202 - 607 1e-29 101.3 47.4 3 7 1.3e-09 2.6e-06 27.6 1.3 1 23 266 290 266 290 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF143-202 - 607 1e-29 101.3 47.4 4 7 1.9e-05 0.037 14.5 0.8 1 23 296 320 296 320 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF143-202 - 607 1e-29 101.3 47.4 5 7 8.9e-07 0.0018 18.6 0.1 1 23 326 350 326 350 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF143-202 - 607 1e-29 101.3 47.4 6 7 2.7e-05 0.054 14.0 1.4 1 23 356 380 356 380 0.95 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF143-202 - 607 1e-29 101.3 47.4 7 7 4.1e-07 0.00082 19.7 2.2 1 23 386 409 386 409 0.98 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZNF143-202 - 607 1.6e-19 68.9 43.9 1 7 0.0002 0.4 11.6 2.0 1 23 206 230 206 231 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF143-202 - 607 1.6e-19 68.9 43.9 2 7 3.1e-06 0.0062 17.3 0.3 1 23 236 260 236 261 0.97 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF143-202 - 607 1.6e-19 68.9 43.9 3 7 1.6e-06 0.0031 18.2 0.6 1 23 266 290 266 291 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF143-202 - 607 1.6e-19 68.9 43.9 4 7 2.9e-05 0.059 14.2 0.6 1 23 296 320 296 321 0.84 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF143-202 - 607 1.6e-19 68.9 43.9 5 7 0.00013 0.25 12.3 0.1 1 23 326 350 326 351 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF143-202 - 607 1.6e-19 68.9 43.9 6 7 0.0014 2.7 9.1 2.2 1 23 356 380 356 382 0.79 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF143-202 - 607 1.6e-19 68.9 43.9 7 7 6e-05 0.12 13.3 1.3 1 24 386 409 386 409 0.95 C2H2-type zinc finger # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF143-202.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF143-202.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF143-202.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF143-202.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF143-202.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:00:18 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZNF143-203 - 638 6.6e-36 121.2 48.8 1 7 0.13 2.6e+02 2.3 0.1 10 25 232 249 221 250 0.82 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF143-203 - 638 6.6e-36 121.2 48.8 2 7 5.9e-09 1.2e-05 25.5 1.0 1 26 253 280 253 280 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF143-203 - 638 6.6e-36 121.2 48.8 3 7 9.1e-11 1.8e-07 31.3 1.4 1 26 283 310 283 310 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF143-203 - 638 6.6e-36 121.2 48.8 4 7 4.7e-11 9.4e-08 32.2 0.5 1 26 313 340 313 340 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF143-203 - 638 6.6e-36 121.2 48.8 5 7 3.7e-07 0.00074 19.8 0.5 5 25 347 369 345 370 0.90 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF143-203 - 638 6.6e-36 121.2 48.8 6 7 3.5e-09 7.1e-06 26.2 0.5 1 25 373 399 373 400 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF143-203 - 638 6.6e-36 121.2 48.8 7 7 0.00027 0.53 10.8 7.6 2 26 404 428 403 428 0.92 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZNF143-203 - 638 1.5e-29 100.8 47.4 1 7 6.6e-06 0.013 15.9 2.8 1 23 237 261 237 261 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF143-203 - 638 1.5e-29 100.8 47.4 2 7 3.8e-07 0.00076 19.8 0.3 1 23 267 291 267 291 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF143-203 - 638 1.5e-29 100.8 47.4 3 7 1.4e-09 2.8e-06 27.5 1.3 1 23 297 321 297 321 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF143-203 - 638 1.5e-29 100.8 47.4 4 7 2e-05 0.04 14.4 0.8 1 23 327 351 327 351 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF143-203 - 638 1.5e-29 100.8 47.4 5 7 9.4e-07 0.0019 18.6 0.1 1 23 357 381 357 381 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF143-203 - 638 1.5e-29 100.8 47.4 6 7 2.9e-05 0.057 13.9 1.4 1 23 387 411 387 411 0.95 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF143-203 - 638 1.5e-29 100.8 47.4 7 7 4.4e-07 0.00087 19.6 2.2 1 23 417 440 417 440 0.98 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZNF143-203 - 638 2.5e-19 68.3 43.9 1 7 0.00022 0.43 11.6 2.0 1 23 237 261 237 262 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF143-203 - 638 2.5e-19 68.3 43.9 2 7 3.3e-06 0.0066 17.2 0.3 1 23 267 291 267 292 0.97 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF143-203 - 638 2.5e-19 68.3 43.9 3 7 1.7e-06 0.0033 18.1 0.6 1 23 297 321 297 322 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF143-203 - 638 2.5e-19 68.3 43.9 4 7 3.1e-05 0.062 14.2 0.6 1 23 327 351 327 352 0.84 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF143-203 - 638 2.5e-19 68.3 43.9 5 7 0.00013 0.27 12.2 0.1 1 23 357 381 357 382 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF143-203 - 638 2.5e-19 68.3 43.9 6 7 0.0014 2.9 9.0 2.2 1 23 387 411 387 413 0.79 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF143-203 - 638 2.5e-19 68.3 43.9 7 7 6.4e-05 0.13 13.2 1.3 1 24 417 440 417 440 0.95 C2H2-type zinc finger # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF143-203.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF143-203.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF143-203.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF143-203.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF143-203.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:00:19 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZNF143-204 - 637 6.5e-36 121.2 48.8 1 7 0.13 2.6e+02 2.3 0.1 10 25 231 248 220 249 0.82 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF143-204 - 637 6.5e-36 121.2 48.8 2 7 5.9e-09 1.2e-05 25.5 1.0 1 26 252 279 252 279 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF143-204 - 637 6.5e-36 121.2 48.8 3 7 9e-11 1.8e-07 31.3 1.4 1 26 282 309 282 309 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF143-204 - 637 6.5e-36 121.2 48.8 4 7 4.7e-11 9.4e-08 32.2 0.5 1 26 312 339 312 339 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF143-204 - 637 6.5e-36 121.2 48.8 5 7 3.7e-07 0.00074 19.8 0.5 5 25 346 368 344 369 0.90 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF143-204 - 637 6.5e-36 121.2 48.8 6 7 3.5e-09 7e-06 26.2 0.5 1 25 372 398 372 399 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF143-204 - 637 6.5e-36 121.2 48.8 7 7 0.00027 0.53 10.8 7.6 2 26 403 427 402 427 0.92 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZNF143-204 - 637 1.5e-29 100.8 47.4 1 7 6.5e-06 0.013 15.9 2.8 1 23 236 260 236 260 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF143-204 - 637 1.5e-29 100.8 47.4 2 7 3.8e-07 0.00075 19.8 0.3 1 23 266 290 266 290 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF143-204 - 637 1.5e-29 100.8 47.4 3 7 1.4e-09 2.8e-06 27.5 1.3 1 23 296 320 296 320 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF143-204 - 637 1.5e-29 100.8 47.4 4 7 2e-05 0.039 14.4 0.8 1 23 326 350 326 350 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF143-204 - 637 1.5e-29 100.8 47.4 5 7 9.4e-07 0.0019 18.6 0.1 1 23 356 380 356 380 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF143-204 - 637 1.5e-29 100.8 47.4 6 7 2.9e-05 0.057 13.9 1.4 1 23 386 410 386 410 0.95 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF143-204 - 637 1.5e-29 100.8 47.4 7 7 4.4e-07 0.00087 19.6 2.2 1 23 416 439 416 439 0.98 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZNF143-204 - 637 2.4e-19 68.3 43.9 1 7 0.00022 0.43 11.6 2.0 1 23 236 260 236 261 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF143-204 - 637 2.4e-19 68.3 43.9 2 7 3.3e-06 0.0066 17.2 0.3 1 23 266 290 266 291 0.97 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF143-204 - 637 2.4e-19 68.3 43.9 3 7 1.7e-06 0.0033 18.1 0.6 1 23 296 320 296 321 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF143-204 - 637 2.4e-19 68.3 43.9 4 7 3.1e-05 0.062 14.2 0.6 1 23 326 350 326 351 0.84 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF143-204 - 637 2.4e-19 68.3 43.9 5 7 0.00013 0.27 12.2 0.1 1 23 356 380 356 381 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF143-204 - 637 2.4e-19 68.3 43.9 6 7 0.0014 2.9 9.0 2.2 1 23 386 410 386 412 0.79 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF143-204 - 637 2.4e-19 68.3 43.9 7 7 6.4e-05 0.13 13.2 1.3 1 24 416 439 416 439 0.95 C2H2-type zinc finger # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF143-204.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF143-204.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF143-204.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF143-204.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF143-204.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:00:19 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF143-205.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF143-205.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF143-205.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF143-205.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF143-205.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:00:19 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF143-206.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF143-206.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF143-206.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF143-206.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF143-206.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:00:20 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF143-207.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF143-207.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF143-207.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF143-207.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF143-207.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:00:20 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF143-208.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF143-208.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF143-208.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF143-208.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF143-208.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:00:20 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF143-209.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF143-209.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF143-209.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF143-209.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF143-209.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:00:21 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF143-210.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF143-210.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF143-210.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF143-210.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF143-210.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:00:21 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF143-211.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF143-211.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF143-211.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF143-211.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF143-211.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:00:21 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF143-212.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF143-212.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF143-212.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF143-212.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF143-212.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:00:22 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZNF143-213 - 637 6.5e-36 121.2 48.8 1 7 0.13 2.6e+02 2.3 0.1 10 25 231 248 220 249 0.82 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF143-213 - 637 6.5e-36 121.2 48.8 2 7 5.9e-09 1.2e-05 25.5 1.0 1 26 252 279 252 279 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF143-213 - 637 6.5e-36 121.2 48.8 3 7 9e-11 1.8e-07 31.3 1.4 1 26 282 309 282 309 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF143-213 - 637 6.5e-36 121.2 48.8 4 7 4.7e-11 9.4e-08 32.2 0.5 1 26 312 339 312 339 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF143-213 - 637 6.5e-36 121.2 48.8 5 7 3.7e-07 0.00074 19.8 0.5 5 25 346 368 344 369 0.90 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF143-213 - 637 6.5e-36 121.2 48.8 6 7 3.5e-09 7e-06 26.2 0.5 1 25 372 398 372 399 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF143-213 - 637 6.5e-36 121.2 48.8 7 7 0.00027 0.53 10.8 7.6 2 26 403 427 402 427 0.92 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZNF143-213 - 637 1.5e-29 100.8 47.4 1 7 6.5e-06 0.013 15.9 2.8 1 23 236 260 236 260 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF143-213 - 637 1.5e-29 100.8 47.4 2 7 3.8e-07 0.00075 19.8 0.3 1 23 266 290 266 290 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF143-213 - 637 1.5e-29 100.8 47.4 3 7 1.4e-09 2.8e-06 27.5 1.3 1 23 296 320 296 320 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF143-213 - 637 1.5e-29 100.8 47.4 4 7 2e-05 0.039 14.4 0.8 1 23 326 350 326 350 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF143-213 - 637 1.5e-29 100.8 47.4 5 7 9.4e-07 0.0019 18.6 0.1 1 23 356 380 356 380 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF143-213 - 637 1.5e-29 100.8 47.4 6 7 2.9e-05 0.057 13.9 1.4 1 23 386 410 386 410 0.95 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF143-213 - 637 1.5e-29 100.8 47.4 7 7 4.4e-07 0.00087 19.6 2.2 1 23 416 439 416 439 0.98 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZNF143-213 - 637 2.4e-19 68.3 43.9 1 7 0.00022 0.43 11.6 2.0 1 23 236 260 236 261 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF143-213 - 637 2.4e-19 68.3 43.9 2 7 3.3e-06 0.0066 17.2 0.3 1 23 266 290 266 291 0.97 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF143-213 - 637 2.4e-19 68.3 43.9 3 7 1.7e-06 0.0033 18.1 0.6 1 23 296 320 296 321 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF143-213 - 637 2.4e-19 68.3 43.9 4 7 3.1e-05 0.062 14.2 0.6 1 23 326 350 326 351 0.84 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF143-213 - 637 2.4e-19 68.3 43.9 5 7 0.00013 0.27 12.2 0.1 1 23 356 380 356 381 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF143-213 - 637 2.4e-19 68.3 43.9 6 7 0.0014 2.9 9.0 2.2 1 23 386 410 386 412 0.79 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF143-213 - 637 2.4e-19 68.3 43.9 7 7 6.4e-05 0.13 13.2 1.3 1 24 416 439 416 439 0.95 C2H2-type zinc finger # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF143-213.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF143-213.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF143-213.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF143-213.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF143-213.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:00:22 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF143-214.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF143-214.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF143-214.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF143-214.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF143-214.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:00:22 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF143-215.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF143-215.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF143-215.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF143-215.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF143-215.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:00:23 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF143-216.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF143-216.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF143-216.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF143-216.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF143-216.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:00:23 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF143-217.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF143-217.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF143-217.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF143-217.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF143-217.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:00:23 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF143-218.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF143-218.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF143-218.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF143-218.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF143-218.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:00:24 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZNF146-201 - 292 7.1e-81 263.3 55.5 1 11 1.1e-05 0.0054 17.1 0.1 11 26 12 27 1 27 0.80 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF146-201 - 292 7.1e-81 263.3 55.5 2 11 8.7e-09 4.5e-06 26.9 2.3 1 25 30 54 30 55 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF146-201 - 292 7.1e-81 263.3 55.5 3 11 9e-09 4.6e-06 26.8 0.4 4 25 61 82 59 83 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF146-201 - 292 7.1e-81 263.3 55.5 4 11 5.6e-11 2.9e-08 33.8 0.2 1 24 86 109 86 111 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF146-201 - 292 7.1e-81 263.3 55.5 5 11 4.8e-12 2.4e-09 37.2 0.7 1 25 114 138 114 138 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF146-201 - 292 7.1e-81 263.3 55.5 6 11 2.7e-09 1.4e-06 28.5 0.1 1 25 142 166 142 167 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF146-201 - 292 7.1e-81 263.3 55.5 7 11 1.2e-10 6.2e-08 32.7 0.3 2 25 171 194 170 195 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF146-201 - 292 7.1e-81 263.3 55.5 8 11 1.2e-09 6.2e-07 29.6 0.0 2 25 199 222 198 223 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF146-201 - 292 7.1e-81 263.3 55.5 9 11 1e-09 5.3e-07 29.8 0.1 2 25 227 250 226 251 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF146-201 - 292 7.1e-81 263.3 55.5 10 11 1e-11 5.2e-09 36.1 0.2 4 25 257 278 255 279 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF146-201 - 292 7.1e-81 263.3 55.5 11 11 3.6 1.9e+03 -0.4 0.9 4 10 285 291 284 291 0.93 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZNF146-201 - 292 2e-63 207.5 63.7 1 10 8.6e-07 0.00044 20.6 3.4 1 23 16 38 16 38 0.90 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF146-201 - 292 2e-63 207.5 63.7 2 10 1.6e-07 8.3e-05 22.8 0.5 1 23 44 66 44 66 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF146-201 - 292 2e-63 207.5 63.7 3 10 2.6e-09 1.4e-06 28.5 0.5 1 23 72 94 72 94 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF146-201 - 292 2e-63 207.5 63.7 4 10 9.5e-11 4.9e-08 33.0 0.6 1 23 100 122 100 122 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF146-201 - 292 2e-63 207.5 63.7 5 10 2.3e-08 1.2e-05 25.5 0.4 1 23 128 150 128 150 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF146-201 - 292 2e-63 207.5 63.7 6 10 5.9e-07 0.0003 21.1 0.4 1 23 156 178 156 178 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF146-201 - 292 2e-63 207.5 63.7 7 10 1.7e-08 8.5e-06 26.0 0.1 1 23 184 206 184 206 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF146-201 - 292 2e-63 207.5 63.7 8 10 1.8e-09 9e-07 29.0 0.3 1 23 212 234 212 234 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF146-201 - 292 2e-63 207.5 63.7 9 10 5.8e-07 0.0003 21.1 0.2 3 23 242 262 240 262 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF146-201 - 292 2e-63 207.5 63.7 10 10 1.5e-06 0.00075 19.8 4.0 1 23 268 290 268 290 0.98 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZNF146-201 - 292 2.2e-38 127.6 63.9 1 10 0.00037 0.19 12.6 3.3 1 23 16 38 16 39 0.89 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF146-201 - 292 2.2e-38 127.6 63.9 2 10 2.5e-05 0.013 16.3 0.5 1 23 44 66 44 67 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF146-201 - 292 2.2e-38 127.6 63.9 3 10 8.7e-07 0.00045 20.8 0.6 1 23 72 94 72 95 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF146-201 - 292 2.2e-38 127.6 63.9 4 10 3e-06 0.0015 19.2 0.4 1 23 100 122 100 123 0.97 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF146-201 - 292 2.2e-38 127.6 63.9 5 10 4.6e-06 0.0023 18.6 0.3 1 23 128 150 128 151 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF146-201 - 292 2.2e-38 127.6 63.9 6 10 7.2e-05 0.037 14.9 0.4 1 23 156 178 156 179 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF146-201 - 292 2.2e-38 127.6 63.9 7 10 5.6e-06 0.0029 18.3 0.2 1 23 184 206 184 207 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF146-201 - 292 2.2e-38 127.6 63.9 8 10 1.3e-06 0.00064 20.3 0.5 1 23 212 234 212 235 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF146-201 - 292 2.2e-38 127.6 63.9 9 10 0.00048 0.25 12.3 0.2 2 23 241 262 240 263 0.91 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF146-201 - 292 2.2e-38 127.6 63.9 10 10 6.8e-05 0.035 15.0 3.4 1 23 268 290 268 291 0.95 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF146-201 - 292 1e-18 66.8 65.4 1 10 0.0014 0.74 9.9 3.2 2 20 16 34 16 38 0.87 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF146-201 - 292 1e-18 66.8 65.4 2 10 0.0012 0.59 10.2 0.9 2 12 44 54 44 66 0.89 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF146-201 - 292 1e-18 66.8 65.4 3 10 2e-05 0.01 15.8 0.7 2 24 72 94 71 97 0.86 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF146-201 - 292 1e-18 66.8 65.4 4 10 0.007 3.6 7.7 0.4 2 24 100 122 100 125 0.88 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF146-201 - 292 1e-18 66.8 65.4 5 10 0.00017 0.085 12.9 1.3 2 22 128 148 128 150 0.84 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF146-201 - 292 1e-18 66.8 65.4 6 10 0.021 11 6.2 0.8 2 18 156 172 156 178 0.77 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF146-201 - 292 1e-18 66.8 65.4 7 10 0.00015 0.075 13.1 0.2 2 20 184 202 184 207 0.85 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF146-201 - 292 1e-18 66.8 65.4 8 10 5.8e-05 0.03 14.3 0.6 2 24 212 234 212 237 0.92 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF146-201 - 292 1e-18 66.8 65.4 9 10 0.0034 1.7 8.7 0.3 2 13 240 251 240 263 0.80 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF146-201 - 292 1e-18 66.8 65.4 10 10 0.0022 1.1 9.3 0.6 2 12 268 278 268 279 0.93 C2H2-type zinc finger zf_UBZ PF18439.1 32 ZNF146-201 - 292 3e-11 42.7 39.9 1 10 0.00097 0.5 10.0 0.7 3 24 16 38 14 39 0.92 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF146-201 - 292 3e-11 42.7 39.9 2 10 0.031 16 5.2 0.2 3 14 44 55 42 59 0.84 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF146-201 - 292 3e-11 42.7 39.9 3 10 0.0025 1.3 8.7 0.2 3 21 72 91 70 91 0.84 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF146-201 - 292 3e-11 42.7 39.9 4 10 0.046 23 4.7 0.1 3 13 100 110 98 119 0.81 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF146-201 - 292 3e-11 42.7 39.9 5 10 0.00018 0.09 12.4 0.1 3 21 128 147 126 147 0.93 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF146-201 - 292 3e-11 42.7 39.9 6 10 0.067 34 4.1 0.2 3 11 156 164 154 169 0.85 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF146-201 - 292 3e-11 42.7 39.9 7 10 0.024 12 5.6 0.1 3 14 184 195 182 199 0.86 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF146-201 - 292 3e-11 42.7 39.9 8 10 0.16 82 2.9 0.1 3 15 212 224 210 230 0.82 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF146-201 - 292 3e-11 42.7 39.9 9 10 0.055 28 4.4 0.0 3 15 240 252 238 259 0.82 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF146-201 - 292 3e-11 42.7 39.9 10 10 0.0028 1.4 8.6 0.3 3 14 268 279 266 283 0.86 Ubiquitin-Binding Zinc Finger zf-C2H2_jaz PF12171.8 27 ZNF146-201 - 292 8.7e-11 41.8 47.5 1 10 0.00023 0.12 12.7 0.5 2 21 16 35 15 36 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF146-201 - 292 8.7e-11 41.8 47.5 2 10 0.048 25 5.3 1.6 2 24 44 66 43 66 0.91 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF146-201 - 292 8.7e-11 41.8 47.5 3 10 0.0032 1.6 9.1 0.6 2 22 72 92 71 92 0.95 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF146-201 - 292 8.7e-11 41.8 47.5 4 10 0.0016 0.81 10.1 0.3 2 24 100 122 99 122 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF146-201 - 292 8.7e-11 41.8 47.5 5 10 2.2e-05 0.011 16.0 0.0 2 22 128 148 127 148 0.95 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF146-201 - 292 8.7e-11 41.8 47.5 6 10 2.4 1.3e+03 -0.1 0.3 2 21 156 175 155 176 0.71 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF146-201 - 292 8.7e-11 41.8 47.5 7 10 0.091 47 4.4 0.0 2 21 184 203 183 204 0.85 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF146-201 - 292 8.7e-11 41.8 47.5 8 10 0.00045 0.23 11.8 0.1 2 24 212 234 211 234 0.95 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF146-201 - 292 8.7e-11 41.8 47.5 9 10 3.9 2e+03 -0.8 0.1 4 12 242 250 240 260 0.81 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF146-201 - 292 8.7e-11 41.8 47.5 10 10 1.1 5.8e+02 0.9 1.2 4 21 270 287 267 288 0.78 Zinc-finger double-stranded RNA-binding Zn-ribbon_8 PF09723.10 40 ZNF146-201 - 292 1.4e-10 41.1 52.2 1 10 0.0069 3.5 7.8 5.2 6 35 16 52 15 58 0.73 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF146-201 - 292 1.4e-10 41.1 52.2 2 10 0.0099 5.1 7.3 0.7 6 19 44 57 43 66 0.81 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF146-201 - 292 1.4e-10 41.1 52.2 3 10 0.00017 0.087 13.0 4.7 6 34 72 107 71 112 0.90 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF146-201 - 292 1.4e-10 41.1 52.2 4 10 0.00087 0.45 10.7 4.1 6 35 100 136 99 140 0.88 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF146-201 - 292 1.4e-10 41.1 52.2 5 10 0.0019 0.96 9.6 4.6 6 34 128 163 127 169 0.85 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF146-201 - 292 1.4e-10 41.1 52.2 6 10 0.00053 0.27 11.4 5.0 6 36 156 193 155 197 0.89 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF146-201 - 292 1.4e-10 41.1 52.2 7 10 5.6e-05 0.029 14.5 3.3 6 35 184 220 183 223 0.88 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF146-201 - 292 1.4e-10 41.1 52.2 8 10 9.3e-05 0.047 13.8 2.8 6 35 212 248 211 252 0.89 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF146-201 - 292 1.4e-10 41.1 52.2 9 10 0.0006 0.31 11.2 4.0 6 35 240 276 239 282 0.80 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF146-201 - 292 1.4e-10 41.1 52.2 10 10 0.0065 3.3 7.9 0.6 6 16 268 278 267 290 0.79 Zinc ribbon domain zinc_ribbon_15 PF17032.5 86 ZNF146-201 - 292 4.4e-09 37.0 36.3 1 6 0.0078 4 8.3 6.8 34 76 40 82 6 87 0.65 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF146-201 - 292 4.4e-09 37.0 36.3 2 6 0.00039 0.2 12.4 2.4 26 78 60 112 56 115 0.84 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF146-201 - 292 4.4e-09 37.0 36.3 3 6 0.00061 0.31 11.8 1.2 30 78 92 140 87 146 0.87 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF146-201 - 292 4.4e-09 37.0 36.3 4 6 0.0027 1.4 9.8 5.3 34 77 152 195 128 199 0.84 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF146-201 - 292 4.4e-09 37.0 36.3 5 6 0.0002 0.1 13.3 0.5 29 76 203 250 197 255 0.88 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF146-201 - 292 4.4e-09 37.0 36.3 6 6 0.09 46 4.9 0.2 30 53 260 283 247 291 0.72 zinc-ribbon family zf-C2HE PF16278.5 64 ZNF146-201 - 292 7.7e-08 32.7 50.6 1 8 0.007 3.6 8.1 4.6 22 49 29 55 2 62 0.75 C2HE / C2H2 / C2HC zinc-binding finger zf-C2HE PF16278.5 64 ZNF146-201 - 292 7.7e-08 32.7 50.6 2 8 0.17 88 3.7 2.1 37 50 71 84 55 95 0.79 C2HE / C2H2 / C2HC zinc-binding finger zf-C2HE PF16278.5 64 ZNF146-201 - 292 7.7e-08 32.7 50.6 3 8 1.1 5.8e+02 1.0 6.5 30 47 121 137 82 151 0.64 C2HE / C2H2 / C2HC zinc-binding finger zf-C2HE PF16278.5 64 ZNF146-201 - 292 7.7e-08 32.7 50.6 4 8 0.0054 2.8 8.5 0.6 26 50 144 168 138 179 0.74 C2HE / C2H2 / C2HC zinc-binding finger zf-C2HE PF16278.5 64 ZNF146-201 - 292 7.7e-08 32.7 50.6 5 8 0.038 19 5.8 0.5 35 57 181 202 167 208 0.74 C2HE / C2H2 / C2HC zinc-binding finger zf-C2HE PF16278.5 64 ZNF146-201 - 292 7.7e-08 32.7 50.6 6 8 0.015 7.9 7.0 0.1 36 61 210 234 207 237 0.83 C2HE / C2H2 / C2HC zinc-binding finger zf-C2HE PF16278.5 64 ZNF146-201 - 292 7.7e-08 32.7 50.6 7 8 0.00024 0.12 12.8 0.3 36 62 238 263 233 265 0.90 C2HE / C2H2 / C2HC zinc-binding finger zf-C2HE PF16278.5 64 ZNF146-201 - 292 7.7e-08 32.7 50.6 8 8 0.23 1.2e+02 3.2 0.7 35 49 265 279 262 283 0.85 C2HE / C2H2 / C2HC zinc-binding finger LIM PF00412.22 58 ZNF146-201 - 292 1.9e-07 31.2 45.9 1 9 0.022 11 6.3 0.4 27 46 16 36 13 40 0.85 LIM domain LIM PF00412.22 58 ZNF146-201 - 292 1.9e-07 31.2 45.9 2 9 2.1e-05 0.011 16.0 3.9 1 43 46 88 46 95 0.89 LIM domain LIM PF00412.22 58 ZNF146-201 - 292 1.9e-07 31.2 45.9 3 9 0.06 31 4.9 0.2 27 41 100 114 96 123 0.77 LIM domain LIM PF00412.22 58 ZNF146-201 - 292 1.9e-07 31.2 45.9 4 9 0.00065 0.33 11.2 3.0 1 46 102 148 102 152 0.87 LIM domain LIM PF00412.22 58 ZNF146-201 - 292 1.9e-07 31.2 45.9 5 9 0.0012 0.61 10.4 3.6 1 46 130 175 130 184 0.80 LIM domain LIM PF00412.22 58 ZNF146-201 - 292 1.9e-07 31.2 45.9 6 9 0.012 6.3 7.1 1.8 1 40 158 197 158 212 0.86 LIM domain LIM PF00412.22 58 ZNF146-201 - 292 1.9e-07 31.2 45.9 7 9 0.21 1.1e+02 3.2 1.1 1 40 186 225 186 240 0.62 LIM domain LIM PF00412.22 58 ZNF146-201 - 292 1.9e-07 31.2 45.9 8 9 0.71 3.6e+02 1.5 1.0 24 36 237 249 214 263 0.49 LIM domain LIM PF00412.22 58 ZNF146-201 - 292 1.9e-07 31.2 45.9 9 9 0.015 7.5 6.9 3.6 1 47 242 288 242 290 0.78 LIM domain zf-C2H2_11 PF16622.5 29 ZNF146-201 - 292 6.9e-07 28.9 36.3 1 10 0.77 3.9e+02 0.9 0.0 6 20 17 31 13 35 0.71 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF146-201 - 292 6.9e-07 28.9 36.3 2 10 0.21 1.1e+02 2.7 0.1 7 15 46 54 43 62 0.87 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF146-201 - 292 6.9e-07 28.9 36.3 3 10 0.12 61 3.5 0.2 7 20 74 87 72 94 0.75 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF146-201 - 292 6.9e-07 28.9 36.3 4 10 0.2 1e+02 2.8 0.1 6 23 101 118 98 121 0.85 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF146-201 - 292 6.9e-07 28.9 36.3 5 10 0.048 25 4.8 0.1 7 24 130 147 128 150 0.84 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF146-201 - 292 6.9e-07 28.9 36.3 6 10 0.03 15 5.4 0.1 5 24 156 175 153 178 0.80 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF146-201 - 292 6.9e-07 28.9 36.3 7 10 0.0017 0.89 9.4 0.1 6 26 185 205 182 206 0.92 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF146-201 - 292 6.9e-07 28.9 36.3 8 10 0.028 14 5.5 0.1 7 24 214 231 211 232 0.89 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF146-201 - 292 6.9e-07 28.9 36.3 9 10 0.02 10 6.0 0.2 7 26 242 261 239 262 0.90 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF146-201 - 292 6.9e-07 28.9 36.3 10 10 0.0095 4.8 7.0 0.8 5 16 268 279 266 290 0.80 zinc-finger C2H2-type # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF146-201.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF146-201.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF146-201.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF146-201.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF146-201.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:00:24 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZNF146-202 - 292 7.1e-81 263.3 55.5 1 11 1.1e-05 0.0054 17.1 0.1 11 26 12 27 1 27 0.80 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF146-202 - 292 7.1e-81 263.3 55.5 2 11 8.7e-09 4.5e-06 26.9 2.3 1 25 30 54 30 55 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF146-202 - 292 7.1e-81 263.3 55.5 3 11 9e-09 4.6e-06 26.8 0.4 4 25 61 82 59 83 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF146-202 - 292 7.1e-81 263.3 55.5 4 11 5.6e-11 2.9e-08 33.8 0.2 1 24 86 109 86 111 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF146-202 - 292 7.1e-81 263.3 55.5 5 11 4.8e-12 2.4e-09 37.2 0.7 1 25 114 138 114 138 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF146-202 - 292 7.1e-81 263.3 55.5 6 11 2.7e-09 1.4e-06 28.5 0.1 1 25 142 166 142 167 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF146-202 - 292 7.1e-81 263.3 55.5 7 11 1.2e-10 6.2e-08 32.7 0.3 2 25 171 194 170 195 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF146-202 - 292 7.1e-81 263.3 55.5 8 11 1.2e-09 6.2e-07 29.6 0.0 2 25 199 222 198 223 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF146-202 - 292 7.1e-81 263.3 55.5 9 11 1e-09 5.3e-07 29.8 0.1 2 25 227 250 226 251 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF146-202 - 292 7.1e-81 263.3 55.5 10 11 1e-11 5.2e-09 36.1 0.2 4 25 257 278 255 279 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF146-202 - 292 7.1e-81 263.3 55.5 11 11 3.6 1.9e+03 -0.4 0.9 4 10 285 291 284 291 0.93 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZNF146-202 - 292 2e-63 207.5 63.7 1 10 8.6e-07 0.00044 20.6 3.4 1 23 16 38 16 38 0.90 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF146-202 - 292 2e-63 207.5 63.7 2 10 1.6e-07 8.3e-05 22.8 0.5 1 23 44 66 44 66 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF146-202 - 292 2e-63 207.5 63.7 3 10 2.6e-09 1.4e-06 28.5 0.5 1 23 72 94 72 94 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF146-202 - 292 2e-63 207.5 63.7 4 10 9.5e-11 4.9e-08 33.0 0.6 1 23 100 122 100 122 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF146-202 - 292 2e-63 207.5 63.7 5 10 2.3e-08 1.2e-05 25.5 0.4 1 23 128 150 128 150 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF146-202 - 292 2e-63 207.5 63.7 6 10 5.9e-07 0.0003 21.1 0.4 1 23 156 178 156 178 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF146-202 - 292 2e-63 207.5 63.7 7 10 1.7e-08 8.5e-06 26.0 0.1 1 23 184 206 184 206 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF146-202 - 292 2e-63 207.5 63.7 8 10 1.8e-09 9e-07 29.0 0.3 1 23 212 234 212 234 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF146-202 - 292 2e-63 207.5 63.7 9 10 5.8e-07 0.0003 21.1 0.2 3 23 242 262 240 262 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF146-202 - 292 2e-63 207.5 63.7 10 10 1.5e-06 0.00075 19.8 4.0 1 23 268 290 268 290 0.98 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZNF146-202 - 292 2.2e-38 127.6 63.9 1 10 0.00037 0.19 12.6 3.3 1 23 16 38 16 39 0.89 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF146-202 - 292 2.2e-38 127.6 63.9 2 10 2.5e-05 0.013 16.3 0.5 1 23 44 66 44 67 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF146-202 - 292 2.2e-38 127.6 63.9 3 10 8.7e-07 0.00045 20.8 0.6 1 23 72 94 72 95 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF146-202 - 292 2.2e-38 127.6 63.9 4 10 3e-06 0.0015 19.2 0.4 1 23 100 122 100 123 0.97 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF146-202 - 292 2.2e-38 127.6 63.9 5 10 4.6e-06 0.0023 18.6 0.3 1 23 128 150 128 151 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF146-202 - 292 2.2e-38 127.6 63.9 6 10 7.2e-05 0.037 14.9 0.4 1 23 156 178 156 179 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF146-202 - 292 2.2e-38 127.6 63.9 7 10 5.6e-06 0.0029 18.3 0.2 1 23 184 206 184 207 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF146-202 - 292 2.2e-38 127.6 63.9 8 10 1.3e-06 0.00064 20.3 0.5 1 23 212 234 212 235 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF146-202 - 292 2.2e-38 127.6 63.9 9 10 0.00048 0.25 12.3 0.2 2 23 241 262 240 263 0.91 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF146-202 - 292 2.2e-38 127.6 63.9 10 10 6.8e-05 0.035 15.0 3.4 1 23 268 290 268 291 0.95 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF146-202 - 292 1e-18 66.8 65.4 1 10 0.0014 0.74 9.9 3.2 2 20 16 34 16 38 0.87 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF146-202 - 292 1e-18 66.8 65.4 2 10 0.0012 0.59 10.2 0.9 2 12 44 54 44 66 0.89 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF146-202 - 292 1e-18 66.8 65.4 3 10 2e-05 0.01 15.8 0.7 2 24 72 94 71 97 0.86 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF146-202 - 292 1e-18 66.8 65.4 4 10 0.007 3.6 7.7 0.4 2 24 100 122 100 125 0.88 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF146-202 - 292 1e-18 66.8 65.4 5 10 0.00017 0.085 12.9 1.3 2 22 128 148 128 150 0.84 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF146-202 - 292 1e-18 66.8 65.4 6 10 0.021 11 6.2 0.8 2 18 156 172 156 178 0.77 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF146-202 - 292 1e-18 66.8 65.4 7 10 0.00015 0.075 13.1 0.2 2 20 184 202 184 207 0.85 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF146-202 - 292 1e-18 66.8 65.4 8 10 5.8e-05 0.03 14.3 0.6 2 24 212 234 212 237 0.92 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF146-202 - 292 1e-18 66.8 65.4 9 10 0.0034 1.7 8.7 0.3 2 13 240 251 240 263 0.80 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF146-202 - 292 1e-18 66.8 65.4 10 10 0.0022 1.1 9.3 0.6 2 12 268 278 268 279 0.93 C2H2-type zinc finger zf_UBZ PF18439.1 32 ZNF146-202 - 292 3e-11 42.7 39.9 1 10 0.00097 0.5 10.0 0.7 3 24 16 38 14 39 0.92 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF146-202 - 292 3e-11 42.7 39.9 2 10 0.031 16 5.2 0.2 3 14 44 55 42 59 0.84 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF146-202 - 292 3e-11 42.7 39.9 3 10 0.0025 1.3 8.7 0.2 3 21 72 91 70 91 0.84 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF146-202 - 292 3e-11 42.7 39.9 4 10 0.046 23 4.7 0.1 3 13 100 110 98 119 0.81 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF146-202 - 292 3e-11 42.7 39.9 5 10 0.00018 0.09 12.4 0.1 3 21 128 147 126 147 0.93 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF146-202 - 292 3e-11 42.7 39.9 6 10 0.067 34 4.1 0.2 3 11 156 164 154 169 0.85 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF146-202 - 292 3e-11 42.7 39.9 7 10 0.024 12 5.6 0.1 3 14 184 195 182 199 0.86 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF146-202 - 292 3e-11 42.7 39.9 8 10 0.16 82 2.9 0.1 3 15 212 224 210 230 0.82 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF146-202 - 292 3e-11 42.7 39.9 9 10 0.055 28 4.4 0.0 3 15 240 252 238 259 0.82 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF146-202 - 292 3e-11 42.7 39.9 10 10 0.0028 1.4 8.6 0.3 3 14 268 279 266 283 0.86 Ubiquitin-Binding Zinc Finger zf-C2H2_jaz PF12171.8 27 ZNF146-202 - 292 8.7e-11 41.8 47.5 1 10 0.00023 0.12 12.7 0.5 2 21 16 35 15 36 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF146-202 - 292 8.7e-11 41.8 47.5 2 10 0.048 25 5.3 1.6 2 24 44 66 43 66 0.91 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF146-202 - 292 8.7e-11 41.8 47.5 3 10 0.0032 1.6 9.1 0.6 2 22 72 92 71 92 0.95 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF146-202 - 292 8.7e-11 41.8 47.5 4 10 0.0016 0.81 10.1 0.3 2 24 100 122 99 122 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF146-202 - 292 8.7e-11 41.8 47.5 5 10 2.2e-05 0.011 16.0 0.0 2 22 128 148 127 148 0.95 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF146-202 - 292 8.7e-11 41.8 47.5 6 10 2.4 1.3e+03 -0.1 0.3 2 21 156 175 155 176 0.71 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF146-202 - 292 8.7e-11 41.8 47.5 7 10 0.091 47 4.4 0.0 2 21 184 203 183 204 0.85 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF146-202 - 292 8.7e-11 41.8 47.5 8 10 0.00045 0.23 11.8 0.1 2 24 212 234 211 234 0.95 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF146-202 - 292 8.7e-11 41.8 47.5 9 10 3.9 2e+03 -0.8 0.1 4 12 242 250 240 260 0.81 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF146-202 - 292 8.7e-11 41.8 47.5 10 10 1.1 5.8e+02 0.9 1.2 4 21 270 287 267 288 0.78 Zinc-finger double-stranded RNA-binding Zn-ribbon_8 PF09723.10 40 ZNF146-202 - 292 1.4e-10 41.1 52.2 1 10 0.0069 3.5 7.8 5.2 6 35 16 52 15 58 0.73 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF146-202 - 292 1.4e-10 41.1 52.2 2 10 0.0099 5.1 7.3 0.7 6 19 44 57 43 66 0.81 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF146-202 - 292 1.4e-10 41.1 52.2 3 10 0.00017 0.087 13.0 4.7 6 34 72 107 71 112 0.90 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF146-202 - 292 1.4e-10 41.1 52.2 4 10 0.00087 0.45 10.7 4.1 6 35 100 136 99 140 0.88 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF146-202 - 292 1.4e-10 41.1 52.2 5 10 0.0019 0.96 9.6 4.6 6 34 128 163 127 169 0.85 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF146-202 - 292 1.4e-10 41.1 52.2 6 10 0.00053 0.27 11.4 5.0 6 36 156 193 155 197 0.89 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF146-202 - 292 1.4e-10 41.1 52.2 7 10 5.6e-05 0.029 14.5 3.3 6 35 184 220 183 223 0.88 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF146-202 - 292 1.4e-10 41.1 52.2 8 10 9.3e-05 0.047 13.8 2.8 6 35 212 248 211 252 0.89 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF146-202 - 292 1.4e-10 41.1 52.2 9 10 0.0006 0.31 11.2 4.0 6 35 240 276 239 282 0.80 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF146-202 - 292 1.4e-10 41.1 52.2 10 10 0.0065 3.3 7.9 0.6 6 16 268 278 267 290 0.79 Zinc ribbon domain zinc_ribbon_15 PF17032.5 86 ZNF146-202 - 292 4.4e-09 37.0 36.3 1 6 0.0078 4 8.3 6.8 34 76 40 82 6 87 0.65 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF146-202 - 292 4.4e-09 37.0 36.3 2 6 0.00039 0.2 12.4 2.4 26 78 60 112 56 115 0.84 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF146-202 - 292 4.4e-09 37.0 36.3 3 6 0.00061 0.31 11.8 1.2 30 78 92 140 87 146 0.87 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF146-202 - 292 4.4e-09 37.0 36.3 4 6 0.0027 1.4 9.8 5.3 34 77 152 195 128 199 0.84 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF146-202 - 292 4.4e-09 37.0 36.3 5 6 0.0002 0.1 13.3 0.5 29 76 203 250 197 255 0.88 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF146-202 - 292 4.4e-09 37.0 36.3 6 6 0.09 46 4.9 0.2 30 53 260 283 247 291 0.72 zinc-ribbon family zf-C2HE PF16278.5 64 ZNF146-202 - 292 7.7e-08 32.7 50.6 1 8 0.007 3.6 8.1 4.6 22 49 29 55 2 62 0.75 C2HE / C2H2 / C2HC zinc-binding finger zf-C2HE PF16278.5 64 ZNF146-202 - 292 7.7e-08 32.7 50.6 2 8 0.17 88 3.7 2.1 37 50 71 84 55 95 0.79 C2HE / C2H2 / C2HC zinc-binding finger zf-C2HE PF16278.5 64 ZNF146-202 - 292 7.7e-08 32.7 50.6 3 8 1.1 5.8e+02 1.0 6.5 30 47 121 137 82 151 0.64 C2HE / C2H2 / C2HC zinc-binding finger zf-C2HE PF16278.5 64 ZNF146-202 - 292 7.7e-08 32.7 50.6 4 8 0.0054 2.8 8.5 0.6 26 50 144 168 138 179 0.74 C2HE / C2H2 / C2HC zinc-binding finger zf-C2HE PF16278.5 64 ZNF146-202 - 292 7.7e-08 32.7 50.6 5 8 0.038 19 5.8 0.5 35 57 181 202 167 208 0.74 C2HE / C2H2 / C2HC zinc-binding finger zf-C2HE PF16278.5 64 ZNF146-202 - 292 7.7e-08 32.7 50.6 6 8 0.015 7.9 7.0 0.1 36 61 210 234 207 237 0.83 C2HE / C2H2 / C2HC zinc-binding finger zf-C2HE PF16278.5 64 ZNF146-202 - 292 7.7e-08 32.7 50.6 7 8 0.00024 0.12 12.8 0.3 36 62 238 263 233 265 0.90 C2HE / C2H2 / C2HC zinc-binding finger zf-C2HE PF16278.5 64 ZNF146-202 - 292 7.7e-08 32.7 50.6 8 8 0.23 1.2e+02 3.2 0.7 35 49 265 279 262 283 0.85 C2HE / C2H2 / C2HC zinc-binding finger LIM PF00412.22 58 ZNF146-202 - 292 1.9e-07 31.2 45.9 1 9 0.022 11 6.3 0.4 27 46 16 36 13 40 0.85 LIM domain LIM PF00412.22 58 ZNF146-202 - 292 1.9e-07 31.2 45.9 2 9 2.1e-05 0.011 16.0 3.9 1 43 46 88 46 95 0.89 LIM domain LIM PF00412.22 58 ZNF146-202 - 292 1.9e-07 31.2 45.9 3 9 0.06 31 4.9 0.2 27 41 100 114 96 123 0.77 LIM domain LIM PF00412.22 58 ZNF146-202 - 292 1.9e-07 31.2 45.9 4 9 0.00065 0.33 11.2 3.0 1 46 102 148 102 152 0.87 LIM domain LIM PF00412.22 58 ZNF146-202 - 292 1.9e-07 31.2 45.9 5 9 0.0012 0.61 10.4 3.6 1 46 130 175 130 184 0.80 LIM domain LIM PF00412.22 58 ZNF146-202 - 292 1.9e-07 31.2 45.9 6 9 0.012 6.3 7.1 1.8 1 40 158 197 158 212 0.86 LIM domain LIM PF00412.22 58 ZNF146-202 - 292 1.9e-07 31.2 45.9 7 9 0.21 1.1e+02 3.2 1.1 1 40 186 225 186 240 0.62 LIM domain LIM PF00412.22 58 ZNF146-202 - 292 1.9e-07 31.2 45.9 8 9 0.71 3.6e+02 1.5 1.0 24 36 237 249 214 263 0.49 LIM domain LIM PF00412.22 58 ZNF146-202 - 292 1.9e-07 31.2 45.9 9 9 0.015 7.5 6.9 3.6 1 47 242 288 242 290 0.78 LIM domain zf-C2H2_11 PF16622.5 29 ZNF146-202 - 292 6.9e-07 28.9 36.3 1 10 0.77 3.9e+02 0.9 0.0 6 20 17 31 13 35 0.71 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF146-202 - 292 6.9e-07 28.9 36.3 2 10 0.21 1.1e+02 2.7 0.1 7 15 46 54 43 62 0.87 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF146-202 - 292 6.9e-07 28.9 36.3 3 10 0.12 61 3.5 0.2 7 20 74 87 72 94 0.75 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF146-202 - 292 6.9e-07 28.9 36.3 4 10 0.2 1e+02 2.8 0.1 6 23 101 118 98 121 0.85 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF146-202 - 292 6.9e-07 28.9 36.3 5 10 0.048 25 4.8 0.1 7 24 130 147 128 150 0.84 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF146-202 - 292 6.9e-07 28.9 36.3 6 10 0.03 15 5.4 0.1 5 24 156 175 153 178 0.80 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF146-202 - 292 6.9e-07 28.9 36.3 7 10 0.0017 0.89 9.4 0.1 6 26 185 205 182 206 0.92 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF146-202 - 292 6.9e-07 28.9 36.3 8 10 0.028 14 5.5 0.1 7 24 214 231 211 232 0.89 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF146-202 - 292 6.9e-07 28.9 36.3 9 10 0.02 10 6.0 0.2 7 26 242 261 239 262 0.90 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF146-202 - 292 6.9e-07 28.9 36.3 10 10 0.0095 4.8 7.0 0.8 5 16 268 279 266 290 0.80 zinc-finger C2H2-type # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF146-202.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF146-202.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF146-202.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF146-202.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF146-202.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:00:25 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF146-203.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF146-203.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF146-203.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF146-203.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF146-203.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:00:25 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF146-204.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF146-204.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF146-204.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF146-204.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF146-204.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:00:26 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF146-205.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF146-205.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF146-205.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF146-205.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF146-205.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:00:26 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZNF148-201 - 794 7.1e-23 80.0 22.2 1 4 0.04 81 3.9 0.5 12 25 168 181 166 182 0.81 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF148-201 - 794 7.1e-23 80.0 22.2 2 4 3.5e-10 7e-07 29.4 0.4 1 24 185 208 185 210 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF148-201 - 794 7.1e-23 80.0 22.2 3 4 2.1e-10 4.2e-07 30.1 0.3 2 24 214 236 214 238 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF148-201 - 794 7.1e-23 80.0 22.2 4 4 7.8e-10 1.5e-06 28.3 3.6 2 25 242 265 241 266 0.93 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZNF148-201 - 794 2.7e-12 46.4 37.8 1 4 3.9e-06 0.0078 16.6 4.6 1 23 171 193 171 193 0.95 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF148-201 - 794 2.7e-12 46.4 37.8 2 4 3.5e-07 0.00069 19.9 1.2 1 23 199 221 199 221 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF148-201 - 794 2.7e-12 46.4 37.8 3 4 1.6e-07 0.00032 21.0 4.0 1 23 227 249 227 249 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF148-201 - 794 2.7e-12 46.4 37.8 4 4 0.0077 15 6.2 5.1 1 23 255 278 255 278 0.98 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZNF148-201 - 794 9.7e-10 38.5 33.8 1 4 1.5e-05 0.029 15.2 3.6 1 23 171 193 171 194 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF148-201 - 794 9.7e-10 38.5 33.8 2 4 1.2e-05 0.025 15.4 1.0 1 23 199 221 199 222 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF148-201 - 794 9.7e-10 38.5 33.8 3 4 2.1e-05 0.042 14.7 2.5 1 23 227 249 227 250 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF148-201 - 794 9.7e-10 38.5 33.8 4 4 0.00075 1.5 9.9 4.2 1 24 255 278 255 278 0.96 C2H2-type zinc finger # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF148-201.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF148-201.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF148-201.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF148-201.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF148-201.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:00:26 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF148-202.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF148-202.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF148-202.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF148-202.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF148-202.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:00:27 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZNF148-203 - 144 3.8e-13 49.2 3.2 1 2 3.5e-06 0.007 16.7 0.1 10 24 2 16 1 18 0.90 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF148-203 - 144 3.8e-13 49.2 3.2 2 2 3.2e-11 6.3e-08 32.7 0.7 2 26 22 46 22 46 0.94 Zinc-finger double domain # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF148-203.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF148-203.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF148-203.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF148-203.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF148-203.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:00:27 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF148-204.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF148-204.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF148-204.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF148-204.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF148-204.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:00:27 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZNF148-205 - 794 7.1e-23 80.0 22.2 1 4 0.04 81 3.9 0.5 12 25 168 181 166 182 0.81 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF148-205 - 794 7.1e-23 80.0 22.2 2 4 3.5e-10 7e-07 29.4 0.4 1 24 185 208 185 210 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF148-205 - 794 7.1e-23 80.0 22.2 3 4 2.1e-10 4.2e-07 30.1 0.3 2 24 214 236 214 238 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF148-205 - 794 7.1e-23 80.0 22.2 4 4 7.8e-10 1.5e-06 28.3 3.6 2 25 242 265 241 266 0.93 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZNF148-205 - 794 2.7e-12 46.4 37.8 1 4 3.9e-06 0.0078 16.6 4.6 1 23 171 193 171 193 0.95 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF148-205 - 794 2.7e-12 46.4 37.8 2 4 3.5e-07 0.00069 19.9 1.2 1 23 199 221 199 221 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF148-205 - 794 2.7e-12 46.4 37.8 3 4 1.6e-07 0.00032 21.0 4.0 1 23 227 249 227 249 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF148-205 - 794 2.7e-12 46.4 37.8 4 4 0.0077 15 6.2 5.1 1 23 255 278 255 278 0.98 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZNF148-205 - 794 9.7e-10 38.5 33.8 1 4 1.5e-05 0.029 15.2 3.6 1 23 171 193 171 194 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF148-205 - 794 9.7e-10 38.5 33.8 2 4 1.2e-05 0.025 15.4 1.0 1 23 199 221 199 222 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF148-205 - 794 9.7e-10 38.5 33.8 3 4 2.1e-05 0.042 14.7 2.5 1 23 227 249 227 250 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF148-205 - 794 9.7e-10 38.5 33.8 4 4 0.00075 1.5 9.9 4.2 1 24 255 278 255 278 0.96 C2H2-type zinc finger # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF148-205.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF148-205.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF148-205.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF148-205.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF148-205.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:00:28 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZNF148-206 - 794 7.1e-23 80.0 22.2 1 4 0.04 81 3.9 0.5 12 25 168 181 166 182 0.81 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF148-206 - 794 7.1e-23 80.0 22.2 2 4 3.5e-10 7e-07 29.4 0.4 1 24 185 208 185 210 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF148-206 - 794 7.1e-23 80.0 22.2 3 4 2.1e-10 4.2e-07 30.1 0.3 2 24 214 236 214 238 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF148-206 - 794 7.1e-23 80.0 22.2 4 4 7.8e-10 1.5e-06 28.3 3.6 2 25 242 265 241 266 0.93 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZNF148-206 - 794 2.7e-12 46.4 37.8 1 4 3.9e-06 0.0078 16.6 4.6 1 23 171 193 171 193 0.95 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF148-206 - 794 2.7e-12 46.4 37.8 2 4 3.5e-07 0.00069 19.9 1.2 1 23 199 221 199 221 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF148-206 - 794 2.7e-12 46.4 37.8 3 4 1.6e-07 0.00032 21.0 4.0 1 23 227 249 227 249 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF148-206 - 794 2.7e-12 46.4 37.8 4 4 0.0077 15 6.2 5.1 1 23 255 278 255 278 0.98 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZNF148-206 - 794 9.7e-10 38.5 33.8 1 4 1.5e-05 0.029 15.2 3.6 1 23 171 193 171 194 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF148-206 - 794 9.7e-10 38.5 33.8 2 4 1.2e-05 0.025 15.4 1.0 1 23 199 221 199 222 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF148-206 - 794 9.7e-10 38.5 33.8 3 4 2.1e-05 0.042 14.7 2.5 1 23 227 249 227 250 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF148-206 - 794 9.7e-10 38.5 33.8 4 4 0.00075 1.5 9.9 4.2 1 24 255 278 255 278 0.96 C2H2-type zinc finger # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF148-206.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF148-206.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF148-206.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF148-206.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF148-206.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:00:28 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZNF148-207 - 794 7.1e-23 80.0 22.2 1 4 0.04 81 3.9 0.5 12 25 168 181 166 182 0.81 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF148-207 - 794 7.1e-23 80.0 22.2 2 4 3.5e-10 7e-07 29.4 0.4 1 24 185 208 185 210 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF148-207 - 794 7.1e-23 80.0 22.2 3 4 2.1e-10 4.2e-07 30.1 0.3 2 24 214 236 214 238 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF148-207 - 794 7.1e-23 80.0 22.2 4 4 7.8e-10 1.5e-06 28.3 3.6 2 25 242 265 241 266 0.93 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZNF148-207 - 794 2.7e-12 46.4 37.8 1 4 3.9e-06 0.0078 16.6 4.6 1 23 171 193 171 193 0.95 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF148-207 - 794 2.7e-12 46.4 37.8 2 4 3.5e-07 0.00069 19.9 1.2 1 23 199 221 199 221 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF148-207 - 794 2.7e-12 46.4 37.8 3 4 1.6e-07 0.00032 21.0 4.0 1 23 227 249 227 249 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF148-207 - 794 2.7e-12 46.4 37.8 4 4 0.0077 15 6.2 5.1 1 23 255 278 255 278 0.98 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZNF148-207 - 794 9.7e-10 38.5 33.8 1 4 1.5e-05 0.029 15.2 3.6 1 23 171 193 171 194 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF148-207 - 794 9.7e-10 38.5 33.8 2 4 1.2e-05 0.025 15.4 1.0 1 23 199 221 199 222 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF148-207 - 794 9.7e-10 38.5 33.8 3 4 2.1e-05 0.042 14.7 2.5 1 23 227 249 227 250 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF148-207 - 794 9.7e-10 38.5 33.8 4 4 0.00075 1.5 9.9 4.2 1 24 255 278 255 278 0.96 C2H2-type zinc finger # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF148-207.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF148-207.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF148-207.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF148-207.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF148-207.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:00:28 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF148-208.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF148-208.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF148-208.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF148-208.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF148-208.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:00:29 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF148-209.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF148-209.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF148-209.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF148-209.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF148-209.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:00:29 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF148-210.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF148-210.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF148-210.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF148-210.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF148-210.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:00:29 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZNF154-201 - 437 1.2e-77 253.1 73.9 1 13 0.3 1.8e+02 2.8 0.4 5 15 57 67 53 82 0.74 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF154-201 - 437 1.2e-77 253.1 73.9 2 13 0.37 2.3e+02 2.5 0.2 8 17 126 135 124 143 0.86 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF154-201 - 437 1.2e-77 253.1 73.9 3 13 0.046 28 5.3 0.3 17 25 163 171 144 172 0.85 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF154-201 - 437 1.2e-77 253.1 73.9 4 13 4.6e-10 2.8e-07 30.6 0.3 1 25 175 199 175 200 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF154-201 - 437 1.2e-77 253.1 73.9 5 13 2.3e-08 1.4e-05 25.3 0.2 2 26 204 228 203 228 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF154-201 - 437 1.2e-77 253.1 73.9 6 13 2.9e-12 1.8e-09 37.6 0.4 1 25 231 255 231 256 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF154-201 - 437 1.2e-77 253.1 73.9 7 13 1.4e-10 8.6e-08 32.3 0.3 1 25 259 283 259 284 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF154-201 - 437 1.2e-77 253.1 73.9 8 13 7.1e-10 4.4e-07 30.0 0.3 2 25 288 311 287 312 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF154-201 - 437 1.2e-77 253.1 73.9 9 13 2.2e-10 1.3e-07 31.7 1.0 2 25 316 339 315 340 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF154-201 - 437 1.2e-77 253.1 73.9 10 13 6.2e-10 3.9e-07 30.2 0.3 1 24 343 366 343 368 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF154-201 - 437 1.2e-77 253.1 73.9 11 13 3.7e-12 2.3e-09 37.3 0.6 1 25 371 395 371 396 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF154-201 - 437 1.2e-77 253.1 73.9 12 13 5e-12 3.1e-09 36.8 1.4 2 26 400 424 399 424 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF154-201 - 437 1.2e-77 253.1 73.9 13 13 3.9 2.4e+03 -0.8 0.3 2 9 428 435 427 436 0.85 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZNF154-201 - 437 2.2e-61 201.0 82.6 1 11 8.1 5e+03 -1.7 0.0 6 16 135 148 132 150 0.70 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF154-201 - 437 2.2e-61 201.0 82.6 2 11 4.2e-08 2.6e-05 24.4 0.7 1 23 161 183 161 183 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF154-201 - 437 2.2e-61 201.0 82.6 3 11 5.5e-09 3.4e-06 27.2 1.0 1 23 189 211 189 211 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF154-201 - 437 2.2e-61 201.0 82.6 4 11 3.2e-08 2e-05 24.8 1.5 1 23 217 239 217 239 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF154-201 - 437 2.2e-61 201.0 82.6 5 11 1.5e-07 9e-05 22.7 0.3 1 23 245 267 245 267 0.95 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF154-201 - 437 2.2e-61 201.0 82.6 6 11 1.6e-07 9.8e-05 22.6 2.8 1 23 273 295 273 295 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF154-201 - 437 2.2e-61 201.0 82.6 7 11 9.3e-09 5.8e-06 26.5 1.2 1 23 301 323 301 323 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF154-201 - 437 2.2e-61 201.0 82.6 8 11 7.6e-08 4.7e-05 23.6 0.5 1 23 329 351 329 351 0.95 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF154-201 - 437 2.2e-61 201.0 82.6 9 11 6.9e-09 4.3e-06 26.9 1.4 1 23 357 379 357 379 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF154-201 - 437 2.2e-61 201.0 82.6 10 11 2.3e-09 1.4e-06 28.4 0.5 1 23 385 407 385 407 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF154-201 - 437 2.2e-61 201.0 82.6 11 11 1.1e-09 7e-07 29.4 1.9 1 23 413 435 413 435 0.98 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZNF154-201 - 437 7.4e-37 122.8 82.1 1 11 6.7 4.2e+03 -0.8 0.0 1 16 133 148 133 150 0.84 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF154-201 - 437 7.4e-37 122.8 82.1 2 11 5.5e-07 0.00034 21.2 0.8 1 23 161 183 161 184 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF154-201 - 437 7.4e-37 122.8 82.1 3 11 5.4e-06 0.0033 18.1 0.9 1 23 189 211 189 212 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF154-201 - 437 7.4e-37 122.8 82.1 4 11 1.2e-05 0.0071 17.1 1.2 1 23 217 239 217 240 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF154-201 - 437 7.4e-37 122.8 82.1 5 11 5.5e-06 0.0034 18.1 0.4 1 23 245 267 245 268 0.91 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF154-201 - 437 7.4e-37 122.8 82.1 6 11 0.0001 0.065 14.1 2.8 1 23 273 295 273 296 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF154-201 - 437 7.4e-37 122.8 82.1 7 11 1.7e-05 0.011 16.6 1.3 1 23 301 323 301 324 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF154-201 - 437 7.4e-37 122.8 82.1 8 11 3.5e-06 0.0022 18.7 0.6 1 23 329 351 329 352 0.91 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF154-201 - 437 7.4e-37 122.8 82.1 9 11 1.9e-05 0.012 16.4 1.5 1 23 357 379 357 380 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF154-201 - 437 7.4e-37 122.8 82.1 10 11 2.9e-06 0.0018 19.0 0.4 1 23 385 407 385 408 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF154-201 - 437 7.4e-37 122.8 82.1 11 11 7.5e-06 0.0047 17.7 1.6 1 23 413 435 413 436 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF154-201 - 437 2.6e-30 103.8 87.4 1 10 3.6e-06 0.0022 17.9 2.4 2 20 161 179 160 185 0.92 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF154-201 - 437 2.6e-30 103.8 87.4 2 10 1.4e-05 0.0085 16.1 0.5 2 24 189 211 189 214 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF154-201 - 437 2.6e-30 103.8 87.4 3 10 3e-06 0.0019 18.2 0.9 2 24 217 239 217 242 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF154-201 - 437 2.6e-30 103.8 87.4 4 10 4.9e-05 0.03 14.3 0.6 2 17 245 260 245 267 0.80 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF154-201 - 437 2.6e-30 103.8 87.4 5 10 0.00014 0.086 12.9 4.2 2 24 273 295 273 298 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF154-201 - 437 2.6e-30 103.8 87.4 6 10 1.1e-05 0.0067 16.4 1.8 2 24 301 323 301 326 0.90 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF154-201 - 437 2.6e-30 103.8 87.4 7 10 8.3e-05 0.051 13.6 0.7 2 17 329 344 329 351 0.80 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF154-201 - 437 2.6e-30 103.8 87.4 8 10 7.7e-06 0.0047 16.9 1.6 2 24 357 379 357 381 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF154-201 - 437 2.6e-30 103.8 87.4 9 10 3.2e-06 0.002 18.1 0.7 2 24 385 407 385 410 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF154-201 - 437 2.6e-30 103.8 87.4 10 10 2.2e-05 0.014 15.4 2.3 2 24 413 435 413 437 0.90 C2H2-type zinc finger KRAB PF01352.27 42 ZNF154-201 - 437 1.7e-23 82.0 0.8 1 1 4.9e-26 3.1e-23 81.2 0.8 2 42 14 54 13 54 0.98 KRAB box zf_UBZ PF18439.1 32 ZNF154-201 - 437 1.3e-16 59.8 45.3 1 10 0.00042 0.26 10.9 0.6 2 18 160 177 159 179 0.81 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF154-201 - 437 1.3e-16 59.8 45.3 2 10 0.01 6.4 6.5 0.2 3 20 189 207 187 208 0.82 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF154-201 - 437 1.3e-16 59.8 45.3 3 10 0.035 22 4.8 0.1 4 13 218 227 216 235 0.85 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF154-201 - 437 1.3e-16 59.8 45.3 4 10 0.00051 0.32 10.6 0.1 3 20 245 263 243 264 0.87 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF154-201 - 437 1.3e-16 59.8 45.3 5 10 0.011 7.1 6.3 0.2 3 14 273 284 271 292 0.78 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF154-201 - 437 1.3e-16 59.8 45.3 6 10 0.00011 0.066 12.8 0.6 3 20 301 319 299 320 0.93 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF154-201 - 437 1.3e-16 59.8 45.3 7 10 0.00034 0.21 11.2 0.1 3 20 329 347 327 348 0.88 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF154-201 - 437 1.3e-16 59.8 45.3 8 10 0.0018 1.1 8.9 0.2 3 20 357 375 355 376 0.80 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF154-201 - 437 1.3e-16 59.8 45.3 9 10 0.0044 2.7 7.7 0.1 3 14 385 396 383 403 0.86 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF154-201 - 437 1.3e-16 59.8 45.3 10 10 0.0021 1.3 8.7 0.4 3 20 413 431 411 432 0.81 Ubiquitin-Binding Zinc Finger zf-C2H2_jaz PF12171.8 27 ZNF154-201 - 437 1.5e-15 57.0 42.2 1 10 0.00084 0.52 10.7 1.3 2 22 161 181 160 181 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF154-201 - 437 1.5e-15 57.0 42.2 2 10 0.0097 6 7.3 0.0 2 21 189 208 188 209 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF154-201 - 437 1.5e-15 57.0 42.2 3 10 0.00079 0.49 10.8 0.2 2 21 217 236 216 237 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF154-201 - 437 1.5e-15 57.0 42.2 4 10 0.0031 1.9 8.9 0.0 2 20 245 263 244 264 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF154-201 - 437 1.5e-15 57.0 42.2 5 10 0.03 18 5.7 1.0 2 22 273 293 272 293 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF154-201 - 437 1.5e-15 57.0 42.2 6 10 0.016 10 6.6 0.1 2 20 301 319 300 319 0.90 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF154-201 - 437 1.5e-15 57.0 42.2 7 10 0.0039 2.4 8.5 0.0 2 20 329 347 328 348 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF154-201 - 437 1.5e-15 57.0 42.2 8 10 0.014 8.8 6.8 0.1 2 22 357 377 356 377 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF154-201 - 437 1.5e-15 57.0 42.2 9 10 0.098 60 4.1 0.0 2 20 385 403 384 405 0.77 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF154-201 - 437 1.5e-15 57.0 42.2 10 10 0.00023 0.14 12.5 0.2 2 22 413 433 412 433 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_11 PF16622.5 29 ZNF154-201 - 437 7.7e-12 44.8 60.4 1 10 0.0025 1.5 8.6 1.7 7 25 163 181 158 183 0.91 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF154-201 - 437 7.7e-12 44.8 60.4 2 10 0.0032 2 8.3 0.9 6 26 190 210 187 211 0.91 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF154-201 - 437 7.7e-12 44.8 60.4 3 10 0.0073 4.5 7.1 0.1 6 26 218 238 216 239 0.91 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF154-201 - 437 7.7e-12 44.8 60.4 4 10 0.021 13 5.7 0.5 6 24 246 264 244 267 0.89 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF154-201 - 437 7.7e-12 44.8 60.4 5 10 0.0016 0.96 9.3 0.5 6 24 274 292 272 295 0.90 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF154-201 - 437 7.7e-12 44.8 60.4 6 10 0.0093 5.7 6.8 0.5 6 25 302 321 300 323 0.87 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF154-201 - 437 7.7e-12 44.8 60.4 7 10 0.0078 4.8 7.0 1.2 5 24 329 348 327 351 0.91 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF154-201 - 437 7.7e-12 44.8 60.4 8 10 0.0022 1.4 8.8 0.3 6 25 358 377 356 379 0.90 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF154-201 - 437 7.7e-12 44.8 60.4 9 10 0.0017 1 9.2 0.2 6 26 386 406 384 407 0.91 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF154-201 - 437 7.7e-12 44.8 60.4 10 10 0.00013 0.083 12.7 0.6 6 26 414 434 411 435 0.93 zinc-finger C2H2-type XPA_N PF01286.18 32 ZNF154-201 - 437 2.6e-10 40.2 43.6 1 10 0.0012 0.76 9.9 0.7 3 15 162 174 161 179 0.90 XPA protein N-terminal XPA_N PF01286.18 32 ZNF154-201 - 437 2.6e-10 40.2 43.6 2 10 0.0037 2.3 8.3 0.3 3 14 190 201 188 204 0.91 XPA protein N-terminal XPA_N PF01286.18 32 ZNF154-201 - 437 2.6e-10 40.2 43.6 3 10 0.0063 3.9 7.6 0.2 3 12 218 227 216 235 0.84 XPA protein N-terminal XPA_N PF01286.18 32 ZNF154-201 - 437 2.6e-10 40.2 43.6 4 10 0.013 8 6.6 0.2 3 13 246 256 244 263 0.78 XPA protein N-terminal XPA_N PF01286.18 32 ZNF154-201 - 437 2.6e-10 40.2 43.6 5 10 0.12 76 3.5 0.1 3 11 274 282 272 290 0.88 XPA protein N-terminal XPA_N PF01286.18 32 ZNF154-201 - 437 2.6e-10 40.2 43.6 6 10 0.012 7.2 6.7 0.1 3 13 302 312 300 322 0.78 XPA protein N-terminal XPA_N PF01286.18 32 ZNF154-201 - 437 2.6e-10 40.2 43.6 7 10 0.01 6.4 6.9 0.1 3 13 330 340 328 347 0.78 XPA protein N-terminal XPA_N PF01286.18 32 ZNF154-201 - 437 2.6e-10 40.2 43.6 8 10 0.063 39 4.4 0.2 3 14 358 369 356 374 0.86 XPA protein N-terminal XPA_N PF01286.18 32 ZNF154-201 - 437 2.6e-10 40.2 43.6 9 10 0.015 9.4 6.4 0.1 3 12 386 395 384 403 0.86 XPA protein N-terminal XPA_N PF01286.18 32 ZNF154-201 - 437 2.6e-10 40.2 43.6 10 10 0.017 11 6.2 0.1 3 12 414 423 412 431 0.81 XPA protein N-terminal C1_1 PF00130.22 53 ZNF154-201 - 437 8.6e-10 38.4 33.5 1 9 0.27 1.6e+02 2.2 0.3 13 21 162 170 146 177 0.70 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF154-201 - 437 8.6e-10 38.4 33.5 2 9 0.015 9.3 6.2 0.2 2 23 179 200 178 208 0.85 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF154-201 - 437 8.6e-10 38.4 33.5 3 9 0.00054 0.33 10.9 1.2 5 37 211 253 205 257 0.82 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF154-201 - 437 8.6e-10 38.4 33.5 4 9 0.0017 1.1 9.2 0.7 4 36 238 280 233 286 0.78 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF154-201 - 437 8.6e-10 38.4 33.5 5 9 0.00028 0.17 11.8 0.5 5 37 267 309 262 313 0.83 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF154-201 - 437 8.6e-10 38.4 33.5 6 9 0.0013 0.83 9.6 1.5 9 36 298 336 291 338 0.81 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF154-201 - 437 8.6e-10 38.4 33.5 7 9 0.00081 0.5 10.3 2.0 1 35 319 363 318 366 0.84 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF154-201 - 437 8.6e-10 38.4 33.5 8 9 0.00082 0.51 10.3 2.5 9 37 354 393 346 425 0.76 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF154-201 - 437 8.6e-10 38.4 33.5 9 9 0.046 28 4.7 0.3 4 23 406 424 400 433 0.75 Phorbol esters/diacylglycerol binding domain (C1 domain) Zn-ribbon_8 PF09723.10 40 ZNF154-201 - 437 1.9e-08 34.3 59.2 1 10 0.1 62 3.8 1.6 6 16 161 171 132 172 0.80 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF154-201 - 437 1.9e-08 34.3 59.2 2 10 0.025 15 5.8 0.4 6 18 161 173 160 179 0.82 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF154-201 - 437 1.9e-08 34.3 59.2 3 10 0.00033 0.2 11.8 3.3 6 34 189 224 188 229 0.80 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF154-201 - 437 1.9e-08 34.3 59.2 4 10 0.005 3.1 8.0 6.2 6 34 245 280 244 280 0.80 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF154-201 - 437 1.9e-08 34.3 59.2 5 10 0.00093 0.58 10.3 5.7 6 35 273 309 272 313 0.90 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF154-201 - 437 1.9e-08 34.3 59.2 6 10 0.00071 0.44 10.7 6.0 6 35 301 337 300 341 0.85 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF154-201 - 437 1.9e-08 34.3 59.2 7 10 0.0019 1.2 9.3 5.3 6 34 329 364 327 364 0.81 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF154-201 - 437 1.9e-08 34.3 59.2 8 10 0.013 8 6.7 7.0 6 35 357 393 356 397 0.86 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF154-201 - 437 1.9e-08 34.3 59.2 9 10 0.00044 0.27 11.4 5.9 6 34 385 420 384 423 0.90 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF154-201 - 437 1.9e-08 34.3 59.2 10 10 0.0032 2 8.6 0.5 6 18 413 425 412 435 0.81 Zinc ribbon domain DZR PF12773.7 49 ZNF154-201 - 437 5.7e-08 32.7 40.2 1 2 8.5 5.2e+03 -2.4 21.8 1 49 163 251 128 318 0.77 Double zinc ribbon DZR PF12773.7 49 ZNF154-201 - 437 5.7e-08 32.7 40.2 2 2 0.17 1.1e+02 3.0 15.3 15 49 303 363 291 428 0.55 Double zinc ribbon zinc_ribbon_15 PF17032.5 86 ZNF154-201 - 437 1e-07 32.6 37.0 1 8 0.12 76 4.2 1.5 39 79 134 174 124 177 0.61 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF154-201 - 437 1e-07 32.6 37.0 2 8 0.00015 0.094 13.5 0.8 29 79 180 230 178 232 0.88 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF154-201 - 437 1e-07 32.6 37.0 3 8 0.00087 0.54 11.1 0.9 38 77 217 256 203 260 0.85 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF154-201 - 437 1e-07 32.6 37.0 4 8 0.005 3.1 8.6 0.8 30 74 237 281 229 288 0.83 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF154-201 - 437 1e-07 32.6 37.0 5 8 0.00045 0.28 12.0 1.0 37 79 272 314 264 316 0.87 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF154-201 - 437 1e-07 32.6 37.0 6 8 0.002 1.2 9.9 0.5 29 74 320 365 315 375 0.84 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF154-201 - 437 1e-07 32.6 37.0 7 8 0.00022 0.14 12.9 0.7 37 78 356 397 345 403 0.88 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF154-201 - 437 1e-07 32.6 37.0 8 8 0.0021 1.3 9.8 1.9 35 78 382 425 374 429 0.86 zinc-ribbon family YhfH PF14149.6 37 ZNF154-201 - 437 3e-07 30.3 34.1 1 10 0.15 92 3.1 0.1 16 23 163 170 162 174 0.86 YhfH-like protein YhfH PF14149.6 37 ZNF154-201 - 437 3e-07 30.3 34.1 2 10 0.04 25 5.0 0.1 15 25 190 200 184 203 0.86 YhfH-like protein YhfH PF14149.6 37 ZNF154-201 - 437 3e-07 30.3 34.1 3 10 0.063 39 4.3 0.1 15 23 218 226 213 231 0.80 YhfH-like protein YhfH PF14149.6 37 ZNF154-201 - 437 3e-07 30.3 34.1 4 10 0.023 14 5.8 0.1 15 25 246 256 244 259 0.85 YhfH-like protein YhfH PF14149.6 37 ZNF154-201 - 437 3e-07 30.3 34.1 5 10 0.16 1e+02 3.0 0.1 15 21 274 280 272 283 0.87 YhfH-like protein YhfH PF14149.6 37 ZNF154-201 - 437 3e-07 30.3 34.1 6 10 0.024 15 5.7 0.1 15 25 302 312 300 315 0.85 YhfH-like protein YhfH PF14149.6 37 ZNF154-201 - 437 3e-07 30.3 34.1 7 10 0.018 11 6.1 0.1 15 25 330 340 328 343 0.84 YhfH-like protein YhfH PF14149.6 37 ZNF154-201 - 437 3e-07 30.3 34.1 8 10 0.19 1.2e+02 2.8 0.1 15 21 358 364 356 366 0.88 YhfH-like protein YhfH PF14149.6 37 ZNF154-201 - 437 3e-07 30.3 34.1 9 10 0.031 19 5.3 0.1 15 25 386 396 384 398 0.84 YhfH-like protein YhfH PF14149.6 37 ZNF154-201 - 437 3e-07 30.3 34.1 10 10 0.018 11 6.1 0.2 15 23 414 422 408 426 0.86 YhfH-like protein # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF154-201.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF154-201.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF154-201.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF154-201.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF154-201.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:00:30 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZNF154-202 - 437 1.2e-77 253.1 73.9 1 13 0.3 1.8e+02 2.8 0.4 5 15 57 67 53 82 0.74 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF154-202 - 437 1.2e-77 253.1 73.9 2 13 0.37 2.3e+02 2.5 0.2 8 17 126 135 124 143 0.86 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF154-202 - 437 1.2e-77 253.1 73.9 3 13 0.046 28 5.3 0.3 17 25 163 171 144 172 0.85 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF154-202 - 437 1.2e-77 253.1 73.9 4 13 4.6e-10 2.8e-07 30.6 0.3 1 25 175 199 175 200 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF154-202 - 437 1.2e-77 253.1 73.9 5 13 2.3e-08 1.4e-05 25.3 0.2 2 26 204 228 203 228 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF154-202 - 437 1.2e-77 253.1 73.9 6 13 2.9e-12 1.8e-09 37.6 0.4 1 25 231 255 231 256 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF154-202 - 437 1.2e-77 253.1 73.9 7 13 1.4e-10 8.6e-08 32.3 0.3 1 25 259 283 259 284 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF154-202 - 437 1.2e-77 253.1 73.9 8 13 7.1e-10 4.4e-07 30.0 0.3 2 25 288 311 287 312 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF154-202 - 437 1.2e-77 253.1 73.9 9 13 2.2e-10 1.3e-07 31.7 1.0 2 25 316 339 315 340 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF154-202 - 437 1.2e-77 253.1 73.9 10 13 6.2e-10 3.9e-07 30.2 0.3 1 24 343 366 343 368 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF154-202 - 437 1.2e-77 253.1 73.9 11 13 3.7e-12 2.3e-09 37.3 0.6 1 25 371 395 371 396 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF154-202 - 437 1.2e-77 253.1 73.9 12 13 5e-12 3.1e-09 36.8 1.4 2 26 400 424 399 424 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF154-202 - 437 1.2e-77 253.1 73.9 13 13 3.9 2.4e+03 -0.8 0.3 2 9 428 435 427 436 0.85 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZNF154-202 - 437 2.2e-61 201.0 82.6 1 11 8.1 5e+03 -1.7 0.0 6 16 135 148 132 150 0.70 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF154-202 - 437 2.2e-61 201.0 82.6 2 11 4.2e-08 2.6e-05 24.4 0.7 1 23 161 183 161 183 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF154-202 - 437 2.2e-61 201.0 82.6 3 11 5.5e-09 3.4e-06 27.2 1.0 1 23 189 211 189 211 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF154-202 - 437 2.2e-61 201.0 82.6 4 11 3.2e-08 2e-05 24.8 1.5 1 23 217 239 217 239 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF154-202 - 437 2.2e-61 201.0 82.6 5 11 1.5e-07 9e-05 22.7 0.3 1 23 245 267 245 267 0.95 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF154-202 - 437 2.2e-61 201.0 82.6 6 11 1.6e-07 9.8e-05 22.6 2.8 1 23 273 295 273 295 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF154-202 - 437 2.2e-61 201.0 82.6 7 11 9.3e-09 5.8e-06 26.5 1.2 1 23 301 323 301 323 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF154-202 - 437 2.2e-61 201.0 82.6 8 11 7.6e-08 4.7e-05 23.6 0.5 1 23 329 351 329 351 0.95 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF154-202 - 437 2.2e-61 201.0 82.6 9 11 6.9e-09 4.3e-06 26.9 1.4 1 23 357 379 357 379 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF154-202 - 437 2.2e-61 201.0 82.6 10 11 2.3e-09 1.4e-06 28.4 0.5 1 23 385 407 385 407 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF154-202 - 437 2.2e-61 201.0 82.6 11 11 1.1e-09 7e-07 29.4 1.9 1 23 413 435 413 435 0.98 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZNF154-202 - 437 7.4e-37 122.8 82.1 1 11 6.7 4.2e+03 -0.8 0.0 1 16 133 148 133 150 0.84 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF154-202 - 437 7.4e-37 122.8 82.1 2 11 5.5e-07 0.00034 21.2 0.8 1 23 161 183 161 184 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF154-202 - 437 7.4e-37 122.8 82.1 3 11 5.4e-06 0.0033 18.1 0.9 1 23 189 211 189 212 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF154-202 - 437 7.4e-37 122.8 82.1 4 11 1.2e-05 0.0071 17.1 1.2 1 23 217 239 217 240 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF154-202 - 437 7.4e-37 122.8 82.1 5 11 5.5e-06 0.0034 18.1 0.4 1 23 245 267 245 268 0.91 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF154-202 - 437 7.4e-37 122.8 82.1 6 11 0.0001 0.065 14.1 2.8 1 23 273 295 273 296 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF154-202 - 437 7.4e-37 122.8 82.1 7 11 1.7e-05 0.011 16.6 1.3 1 23 301 323 301 324 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF154-202 - 437 7.4e-37 122.8 82.1 8 11 3.5e-06 0.0022 18.7 0.6 1 23 329 351 329 352 0.91 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF154-202 - 437 7.4e-37 122.8 82.1 9 11 1.9e-05 0.012 16.4 1.5 1 23 357 379 357 380 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF154-202 - 437 7.4e-37 122.8 82.1 10 11 2.9e-06 0.0018 19.0 0.4 1 23 385 407 385 408 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF154-202 - 437 7.4e-37 122.8 82.1 11 11 7.5e-06 0.0047 17.7 1.6 1 23 413 435 413 436 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF154-202 - 437 2.6e-30 103.8 87.4 1 10 3.6e-06 0.0022 17.9 2.4 2 20 161 179 160 185 0.92 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF154-202 - 437 2.6e-30 103.8 87.4 2 10 1.4e-05 0.0085 16.1 0.5 2 24 189 211 189 214 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF154-202 - 437 2.6e-30 103.8 87.4 3 10 3e-06 0.0019 18.2 0.9 2 24 217 239 217 242 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF154-202 - 437 2.6e-30 103.8 87.4 4 10 4.9e-05 0.03 14.3 0.6 2 17 245 260 245 267 0.80 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF154-202 - 437 2.6e-30 103.8 87.4 5 10 0.00014 0.086 12.9 4.2 2 24 273 295 273 298 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF154-202 - 437 2.6e-30 103.8 87.4 6 10 1.1e-05 0.0067 16.4 1.8 2 24 301 323 301 326 0.90 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF154-202 - 437 2.6e-30 103.8 87.4 7 10 8.3e-05 0.051 13.6 0.7 2 17 329 344 329 351 0.80 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF154-202 - 437 2.6e-30 103.8 87.4 8 10 7.7e-06 0.0047 16.9 1.6 2 24 357 379 357 381 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF154-202 - 437 2.6e-30 103.8 87.4 9 10 3.2e-06 0.002 18.1 0.7 2 24 385 407 385 410 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF154-202 - 437 2.6e-30 103.8 87.4 10 10 2.2e-05 0.014 15.4 2.3 2 24 413 435 413 437 0.90 C2H2-type zinc finger KRAB PF01352.27 42 ZNF154-202 - 437 1.7e-23 82.0 0.8 1 1 4.9e-26 3.1e-23 81.2 0.8 2 42 14 54 13 54 0.98 KRAB box zf_UBZ PF18439.1 32 ZNF154-202 - 437 1.3e-16 59.8 45.3 1 10 0.00042 0.26 10.9 0.6 2 18 160 177 159 179 0.81 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF154-202 - 437 1.3e-16 59.8 45.3 2 10 0.01 6.4 6.5 0.2 3 20 189 207 187 208 0.82 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF154-202 - 437 1.3e-16 59.8 45.3 3 10 0.035 22 4.8 0.1 4 13 218 227 216 235 0.85 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF154-202 - 437 1.3e-16 59.8 45.3 4 10 0.00051 0.32 10.6 0.1 3 20 245 263 243 264 0.87 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF154-202 - 437 1.3e-16 59.8 45.3 5 10 0.011 7.1 6.3 0.2 3 14 273 284 271 292 0.78 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF154-202 - 437 1.3e-16 59.8 45.3 6 10 0.00011 0.066 12.8 0.6 3 20 301 319 299 320 0.93 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF154-202 - 437 1.3e-16 59.8 45.3 7 10 0.00034 0.21 11.2 0.1 3 20 329 347 327 348 0.88 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF154-202 - 437 1.3e-16 59.8 45.3 8 10 0.0018 1.1 8.9 0.2 3 20 357 375 355 376 0.80 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF154-202 - 437 1.3e-16 59.8 45.3 9 10 0.0044 2.7 7.7 0.1 3 14 385 396 383 403 0.86 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF154-202 - 437 1.3e-16 59.8 45.3 10 10 0.0021 1.3 8.7 0.4 3 20 413 431 411 432 0.81 Ubiquitin-Binding Zinc Finger zf-C2H2_jaz PF12171.8 27 ZNF154-202 - 437 1.5e-15 57.0 42.2 1 10 0.00084 0.52 10.7 1.3 2 22 161 181 160 181 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF154-202 - 437 1.5e-15 57.0 42.2 2 10 0.0097 6 7.3 0.0 2 21 189 208 188 209 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF154-202 - 437 1.5e-15 57.0 42.2 3 10 0.00079 0.49 10.8 0.2 2 21 217 236 216 237 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF154-202 - 437 1.5e-15 57.0 42.2 4 10 0.0031 1.9 8.9 0.0 2 20 245 263 244 264 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF154-202 - 437 1.5e-15 57.0 42.2 5 10 0.03 18 5.7 1.0 2 22 273 293 272 293 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF154-202 - 437 1.5e-15 57.0 42.2 6 10 0.016 10 6.6 0.1 2 20 301 319 300 319 0.90 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF154-202 - 437 1.5e-15 57.0 42.2 7 10 0.0039 2.4 8.5 0.0 2 20 329 347 328 348 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF154-202 - 437 1.5e-15 57.0 42.2 8 10 0.014 8.8 6.8 0.1 2 22 357 377 356 377 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF154-202 - 437 1.5e-15 57.0 42.2 9 10 0.098 60 4.1 0.0 2 20 385 403 384 405 0.77 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF154-202 - 437 1.5e-15 57.0 42.2 10 10 0.00023 0.14 12.5 0.2 2 22 413 433 412 433 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_11 PF16622.5 29 ZNF154-202 - 437 7.7e-12 44.8 60.4 1 10 0.0025 1.5 8.6 1.7 7 25 163 181 158 183 0.91 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF154-202 - 437 7.7e-12 44.8 60.4 2 10 0.0032 2 8.3 0.9 6 26 190 210 187 211 0.91 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF154-202 - 437 7.7e-12 44.8 60.4 3 10 0.0073 4.5 7.1 0.1 6 26 218 238 216 239 0.91 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF154-202 - 437 7.7e-12 44.8 60.4 4 10 0.021 13 5.7 0.5 6 24 246 264 244 267 0.89 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF154-202 - 437 7.7e-12 44.8 60.4 5 10 0.0016 0.96 9.3 0.5 6 24 274 292 272 295 0.90 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF154-202 - 437 7.7e-12 44.8 60.4 6 10 0.0093 5.7 6.8 0.5 6 25 302 321 300 323 0.87 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF154-202 - 437 7.7e-12 44.8 60.4 7 10 0.0078 4.8 7.0 1.2 5 24 329 348 327 351 0.91 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF154-202 - 437 7.7e-12 44.8 60.4 8 10 0.0022 1.4 8.8 0.3 6 25 358 377 356 379 0.90 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF154-202 - 437 7.7e-12 44.8 60.4 9 10 0.0017 1 9.2 0.2 6 26 386 406 384 407 0.91 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF154-202 - 437 7.7e-12 44.8 60.4 10 10 0.00013 0.083 12.7 0.6 6 26 414 434 411 435 0.93 zinc-finger C2H2-type XPA_N PF01286.18 32 ZNF154-202 - 437 2.6e-10 40.2 43.6 1 10 0.0012 0.76 9.9 0.7 3 15 162 174 161 179 0.90 XPA protein N-terminal XPA_N PF01286.18 32 ZNF154-202 - 437 2.6e-10 40.2 43.6 2 10 0.0037 2.3 8.3 0.3 3 14 190 201 188 204 0.91 XPA protein N-terminal XPA_N PF01286.18 32 ZNF154-202 - 437 2.6e-10 40.2 43.6 3 10 0.0063 3.9 7.6 0.2 3 12 218 227 216 235 0.84 XPA protein N-terminal XPA_N PF01286.18 32 ZNF154-202 - 437 2.6e-10 40.2 43.6 4 10 0.013 8 6.6 0.2 3 13 246 256 244 263 0.78 XPA protein N-terminal XPA_N PF01286.18 32 ZNF154-202 - 437 2.6e-10 40.2 43.6 5 10 0.12 76 3.5 0.1 3 11 274 282 272 290 0.88 XPA protein N-terminal XPA_N PF01286.18 32 ZNF154-202 - 437 2.6e-10 40.2 43.6 6 10 0.012 7.2 6.7 0.1 3 13 302 312 300 322 0.78 XPA protein N-terminal XPA_N PF01286.18 32 ZNF154-202 - 437 2.6e-10 40.2 43.6 7 10 0.01 6.4 6.9 0.1 3 13 330 340 328 347 0.78 XPA protein N-terminal XPA_N PF01286.18 32 ZNF154-202 - 437 2.6e-10 40.2 43.6 8 10 0.063 39 4.4 0.2 3 14 358 369 356 374 0.86 XPA protein N-terminal XPA_N PF01286.18 32 ZNF154-202 - 437 2.6e-10 40.2 43.6 9 10 0.015 9.4 6.4 0.1 3 12 386 395 384 403 0.86 XPA protein N-terminal XPA_N PF01286.18 32 ZNF154-202 - 437 2.6e-10 40.2 43.6 10 10 0.017 11 6.2 0.1 3 12 414 423 412 431 0.81 XPA protein N-terminal C1_1 PF00130.22 53 ZNF154-202 - 437 8.6e-10 38.4 33.5 1 9 0.27 1.6e+02 2.2 0.3 13 21 162 170 146 177 0.70 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF154-202 - 437 8.6e-10 38.4 33.5 2 9 0.015 9.3 6.2 0.2 2 23 179 200 178 208 0.85 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF154-202 - 437 8.6e-10 38.4 33.5 3 9 0.00054 0.33 10.9 1.2 5 37 211 253 205 257 0.82 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF154-202 - 437 8.6e-10 38.4 33.5 4 9 0.0017 1.1 9.2 0.7 4 36 238 280 233 286 0.78 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF154-202 - 437 8.6e-10 38.4 33.5 5 9 0.00028 0.17 11.8 0.5 5 37 267 309 262 313 0.83 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF154-202 - 437 8.6e-10 38.4 33.5 6 9 0.0013 0.83 9.6 1.5 9 36 298 336 291 338 0.81 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF154-202 - 437 8.6e-10 38.4 33.5 7 9 0.00081 0.5 10.3 2.0 1 35 319 363 318 366 0.84 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF154-202 - 437 8.6e-10 38.4 33.5 8 9 0.00082 0.51 10.3 2.5 9 37 354 393 346 425 0.76 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF154-202 - 437 8.6e-10 38.4 33.5 9 9 0.046 28 4.7 0.3 4 23 406 424 400 433 0.75 Phorbol esters/diacylglycerol binding domain (C1 domain) Zn-ribbon_8 PF09723.10 40 ZNF154-202 - 437 1.9e-08 34.3 59.2 1 10 0.1 62 3.8 1.6 6 16 161 171 132 172 0.80 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF154-202 - 437 1.9e-08 34.3 59.2 2 10 0.025 15 5.8 0.4 6 18 161 173 160 179 0.82 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF154-202 - 437 1.9e-08 34.3 59.2 3 10 0.00033 0.2 11.8 3.3 6 34 189 224 188 229 0.80 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF154-202 - 437 1.9e-08 34.3 59.2 4 10 0.005 3.1 8.0 6.2 6 34 245 280 244 280 0.80 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF154-202 - 437 1.9e-08 34.3 59.2 5 10 0.00093 0.58 10.3 5.7 6 35 273 309 272 313 0.90 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF154-202 - 437 1.9e-08 34.3 59.2 6 10 0.00071 0.44 10.7 6.0 6 35 301 337 300 341 0.85 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF154-202 - 437 1.9e-08 34.3 59.2 7 10 0.0019 1.2 9.3 5.3 6 34 329 364 327 364 0.81 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF154-202 - 437 1.9e-08 34.3 59.2 8 10 0.013 8 6.7 7.0 6 35 357 393 356 397 0.86 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF154-202 - 437 1.9e-08 34.3 59.2 9 10 0.00044 0.27 11.4 5.9 6 34 385 420 384 423 0.90 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF154-202 - 437 1.9e-08 34.3 59.2 10 10 0.0032 2 8.6 0.5 6 18 413 425 412 435 0.81 Zinc ribbon domain DZR PF12773.7 49 ZNF154-202 - 437 5.7e-08 32.7 40.2 1 2 8.5 5.2e+03 -2.4 21.8 1 49 163 251 128 318 0.77 Double zinc ribbon DZR PF12773.7 49 ZNF154-202 - 437 5.7e-08 32.7 40.2 2 2 0.17 1.1e+02 3.0 15.3 15 49 303 363 291 428 0.55 Double zinc ribbon zinc_ribbon_15 PF17032.5 86 ZNF154-202 - 437 1e-07 32.6 37.0 1 8 0.12 76 4.2 1.5 39 79 134 174 124 177 0.61 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF154-202 - 437 1e-07 32.6 37.0 2 8 0.00015 0.094 13.5 0.8 29 79 180 230 178 232 0.88 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF154-202 - 437 1e-07 32.6 37.0 3 8 0.00087 0.54 11.1 0.9 38 77 217 256 203 260 0.85 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF154-202 - 437 1e-07 32.6 37.0 4 8 0.005 3.1 8.6 0.8 30 74 237 281 229 288 0.83 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF154-202 - 437 1e-07 32.6 37.0 5 8 0.00045 0.28 12.0 1.0 37 79 272 314 264 316 0.87 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF154-202 - 437 1e-07 32.6 37.0 6 8 0.002 1.2 9.9 0.5 29 74 320 365 315 375 0.84 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF154-202 - 437 1e-07 32.6 37.0 7 8 0.00022 0.14 12.9 0.7 37 78 356 397 345 403 0.88 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF154-202 - 437 1e-07 32.6 37.0 8 8 0.0021 1.3 9.8 1.9 35 78 382 425 374 429 0.86 zinc-ribbon family YhfH PF14149.6 37 ZNF154-202 - 437 3e-07 30.3 34.1 1 10 0.15 92 3.1 0.1 16 23 163 170 162 174 0.86 YhfH-like protein YhfH PF14149.6 37 ZNF154-202 - 437 3e-07 30.3 34.1 2 10 0.04 25 5.0 0.1 15 25 190 200 184 203 0.86 YhfH-like protein YhfH PF14149.6 37 ZNF154-202 - 437 3e-07 30.3 34.1 3 10 0.063 39 4.3 0.1 15 23 218 226 213 231 0.80 YhfH-like protein YhfH PF14149.6 37 ZNF154-202 - 437 3e-07 30.3 34.1 4 10 0.023 14 5.8 0.1 15 25 246 256 244 259 0.85 YhfH-like protein YhfH PF14149.6 37 ZNF154-202 - 437 3e-07 30.3 34.1 5 10 0.16 1e+02 3.0 0.1 15 21 274 280 272 283 0.87 YhfH-like protein YhfH PF14149.6 37 ZNF154-202 - 437 3e-07 30.3 34.1 6 10 0.024 15 5.7 0.1 15 25 302 312 300 315 0.85 YhfH-like protein YhfH PF14149.6 37 ZNF154-202 - 437 3e-07 30.3 34.1 7 10 0.018 11 6.1 0.1 15 25 330 340 328 343 0.84 YhfH-like protein YhfH PF14149.6 37 ZNF154-202 - 437 3e-07 30.3 34.1 8 10 0.19 1.2e+02 2.8 0.1 15 21 358 364 356 366 0.88 YhfH-like protein YhfH PF14149.6 37 ZNF154-202 - 437 3e-07 30.3 34.1 9 10 0.031 19 5.3 0.1 15 25 386 396 384 398 0.84 YhfH-like protein YhfH PF14149.6 37 ZNF154-202 - 437 3e-07 30.3 34.1 10 10 0.018 11 6.1 0.2 15 23 414 422 408 426 0.86 YhfH-like protein # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF154-202.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF154-202.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF154-202.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF154-202.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF154-202.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:00:30 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZNF155-201 - 538 1.7e-78 255.8 94.6 1 14 1.5 1.7e+03 -0.2 0.1 8 14 141 147 140 155 0.80 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF155-201 - 538 1.7e-78 255.8 94.6 2 14 0.0071 8 7.1 0.3 12 23 173 184 171 185 0.89 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF155-201 - 538 1.7e-78 255.8 94.6 3 14 7.3e-07 0.00082 19.7 0.1 5 25 194 214 190 215 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF155-201 - 538 1.7e-78 255.8 94.6 4 14 2e-11 2.2e-08 34.1 1.6 1 25 218 242 218 243 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF155-201 - 538 1.7e-78 255.8 94.6 5 14 1.4e-09 1.6e-06 28.3 0.3 1 26 246 271 246 271 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF155-201 - 538 1.7e-78 255.8 94.6 6 14 9.9e-11 1.1e-07 31.9 1.5 2 24 275 297 274 298 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF155-201 - 538 1.7e-78 255.8 94.6 7 14 1.5e-09 1.7e-06 28.2 1.9 2 24 303 325 302 327 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF155-201 - 538 1.7e-78 255.8 94.6 8 14 5.1e-11 5.7e-08 32.8 0.7 1 24 330 353 330 354 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF155-201 - 538 1.7e-78 255.8 94.6 9 14 2e-09 2.3e-06 27.8 1.8 2 24 359 381 358 382 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF155-201 - 538 1.7e-78 255.8 94.6 10 14 2.2e-08 2.4e-05 24.5 0.5 4 24 389 409 387 411 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF155-201 - 538 1.7e-78 255.8 94.6 11 14 1.4e-10 1.5e-07 31.5 0.4 2 26 415 439 414 439 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF155-201 - 538 1.7e-78 255.8 94.6 12 14 4.5e-11 5e-08 33.0 0.4 1 25 442 466 442 467 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF155-201 - 538 1.7e-78 255.8 94.6 13 14 0.00025 0.28 11.7 4.9 5 23 474 492 472 495 0.90 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF155-201 - 538 1.7e-78 255.8 94.6 14 14 0.037 41 4.8 0.2 11 26 508 523 498 523 0.90 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZNF155-201 - 538 4.9e-51 168.4 98.4 1 13 5e-06 0.0056 17.1 1.7 1 23 176 198 176 198 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF155-201 - 538 4.9e-51 168.4 98.4 2 13 5.9e-09 6.6e-06 26.3 1.8 1 23 204 226 204 226 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF155-201 - 538 4.9e-51 168.4 98.4 3 13 1.9e-08 2.1e-05 24.7 0.8 1 23 232 254 232 254 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF155-201 - 538 4.9e-51 168.4 98.4 4 13 4.3e-06 0.0048 17.3 0.4 1 23 260 282 260 282 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF155-201 - 538 4.9e-51 168.4 98.4 5 13 3.7e-06 0.0042 17.5 2.3 1 23 288 310 288 310 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF155-201 - 538 4.9e-51 168.4 98.4 6 13 2.6e-05 0.03 14.8 5.3 1 23 316 338 316 338 0.92 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF155-201 - 538 4.9e-51 168.4 98.4 7 13 0.00018 0.2 12.1 0.3 1 23 344 366 344 366 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF155-201 - 538 4.9e-51 168.4 98.4 8 13 2.8e-06 0.0031 17.9 2.7 1 23 372 394 372 394 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF155-201 - 538 4.9e-51 168.4 98.4 9 13 9.9e-09 1.1e-05 25.6 1.1 1 23 400 422 400 422 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF155-201 - 538 4.9e-51 168.4 98.4 10 13 3.5e-07 0.0004 20.7 0.4 1 23 428 450 428 450 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF155-201 - 538 4.9e-51 168.4 98.4 11 13 6.1e-07 0.00068 19.9 0.9 1 23 456 478 456 478 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF155-201 - 538 4.9e-51 168.4 98.4 12 13 0.011 12 6.5 0.5 1 12 484 495 484 499 0.83 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF155-201 - 538 4.9e-51 168.4 98.4 13 13 0.0012 1.3 9.6 0.3 2 16 513 527 512 528 0.90 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZNF155-201 - 538 1.8e-30 103.0 92.3 1 13 0.0025 2.8 9.0 1.4 1 23 176 198 176 199 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF155-201 - 538 1.8e-30 103.0 92.3 2 13 3.3e-06 0.0037 18.0 1.7 1 23 204 226 204 227 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF155-201 - 538 1.8e-30 103.0 92.3 3 13 7.3e-07 0.00081 20.0 0.8 1 23 232 254 232 255 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF155-201 - 538 1.8e-30 103.0 92.3 4 13 0.0015 1.7 9.7 0.4 1 23 260 282 260 283 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF155-201 - 538 1.8e-30 103.0 92.3 5 13 0.0001 0.12 13.3 1.6 1 23 288 310 288 311 0.90 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF155-201 - 538 1.8e-30 103.0 92.3 6 13 0.00048 0.54 11.2 4.3 1 23 316 338 316 339 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF155-201 - 538 1.8e-30 103.0 92.3 7 13 0.00044 0.5 11.4 0.3 1 23 344 366 344 367 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF155-201 - 538 1.8e-30 103.0 92.3 8 13 0.00025 0.28 12.1 2.9 1 23 372 394 372 395 0.89 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF155-201 - 538 1.8e-30 103.0 92.3 9 13 2.3e-06 0.0026 18.5 1.1 1 23 400 422 400 423 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF155-201 - 538 1.8e-30 103.0 92.3 10 13 8e-05 0.09 13.7 0.3 1 23 428 450 428 451 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF155-201 - 538 1.8e-30 103.0 92.3 11 13 1.9e-05 0.022 15.6 0.7 1 23 456 478 456 478 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF155-201 - 538 1.8e-30 103.0 92.3 12 13 0.16 1.8e+02 3.4 0.2 1 10 484 493 484 499 0.86 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF155-201 - 538 1.8e-30 103.0 92.3 13 13 0.044 49 5.1 0.1 2 14 513 525 512 529 0.84 C2H2-type zinc finger KRAB PF01352.27 42 ZNF155-201 - 538 4.2e-23 80.7 0.1 1 1 3.8e-26 4.2e-23 80.7 0.1 2 42 8 48 7 48 0.98 KRAB box zf-C2H2_jaz PF12171.8 27 ZNF155-201 - 538 5.4e-19 68.0 60.3 1 13 1.9 2.2e+03 -0.9 0.1 2 10 176 184 175 185 0.83 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF155-201 - 538 5.4e-19 68.0 60.3 2 13 0.00028 0.32 11.4 0.3 2 22 204 224 203 224 0.95 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF155-201 - 538 5.4e-19 68.0 60.3 3 13 0.00026 0.29 11.5 0.0 2 22 232 252 231 252 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF155-201 - 538 5.4e-19 68.0 60.3 4 13 3.6e-06 0.004 17.4 0.2 2 22 260 280 259 280 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF155-201 - 538 5.4e-19 68.0 60.3 5 13 0.022 24 5.4 0.4 2 11 288 297 287 306 0.87 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF155-201 - 538 5.4e-19 68.0 60.3 6 13 0.00042 0.47 10.8 1.2 2 20 316 334 315 335 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF155-201 - 538 5.4e-19 68.0 60.3 7 13 0.023 25 5.3 0.1 2 20 344 362 343 363 0.81 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF155-201 - 538 5.4e-19 68.0 60.3 8 13 0.033 37 4.8 0.6 2 12 372 382 371 392 0.78 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF155-201 - 538 5.4e-19 68.0 60.3 9 13 4.7e-06 0.0053 17.0 1.8 2 24 400 422 399 423 0.95 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF155-201 - 538 5.4e-19 68.0 60.3 10 13 0.0041 4.6 7.6 0.1 2 22 428 448 427 448 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF155-201 - 538 5.4e-19 68.0 60.3 11 13 5.8e-05 0.065 13.5 0.1 2 22 456 476 455 476 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF155-201 - 538 5.4e-19 68.0 60.3 12 13 2.2 2.5e+03 -1.1 0.2 2 9 484 491 483 492 0.86 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF155-201 - 538 5.4e-19 68.0 60.3 13 13 1.7 1.9e+03 -0.7 0.0 3 15 513 525 511 528 0.79 Zinc-finger double-stranded RNA-binding zf_UBZ PF18439.1 32 ZNF155-201 - 538 4.4e-10 39.0 64.0 1 14 5.2 5.8e+03 -3.0 0.1 7 13 152 158 152 159 0.85 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF155-201 - 538 4.4e-10 39.0 64.0 2 14 0.0015 1.7 8.3 2.0 2 12 175 185 174 186 0.92 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF155-201 - 538 4.4e-10 39.0 64.0 3 14 0.0025 2.8 7.6 0.3 3 21 204 223 202 223 0.90 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF155-201 - 538 4.4e-10 39.0 64.0 4 14 0.012 13 5.5 0.1 3 13 232 242 230 250 0.84 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF155-201 - 538 4.4e-10 39.0 64.0 5 14 0.00033 0.37 10.4 0.3 3 20 260 278 258 279 0.92 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF155-201 - 538 4.4e-10 39.0 64.0 6 14 0.019 21 4.8 0.1 3 15 288 300 286 307 0.76 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF155-201 - 538 4.4e-10 39.0 64.0 7 14 0.033 37 4.0 0.2 3 14 316 327 314 334 0.81 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF155-201 - 538 4.4e-10 39.0 64.0 8 14 0.024 27 4.5 0.1 3 12 344 353 342 362 0.88 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF155-201 - 538 4.4e-10 39.0 64.0 9 14 0.014 15 5.3 0.2 3 12 372 381 370 385 0.89 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF155-201 - 538 4.4e-10 39.0 64.0 10 14 0.00034 0.38 10.4 0.2 2 21 399 419 398 419 0.92 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF155-201 - 538 4.4e-10 39.0 64.0 11 14 0.02 22 4.7 0.1 3 10 428 435 426 446 0.90 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF155-201 - 538 4.4e-10 39.0 64.0 12 14 0.0032 3.5 7.3 0.1 3 15 456 468 454 475 0.80 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF155-201 - 538 4.4e-10 39.0 64.0 13 14 0.016 18 5.0 0.2 3 12 484 493 482 496 0.86 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF155-201 - 538 4.4e-10 39.0 64.0 14 14 0.39 4.4e+02 0.6 0.5 4 11 513 520 512 523 0.84 Ubiquitin-Binding Zinc Finger Zn-ribbon_8 PF09723.10 40 ZNF155-201 - 538 2.2e-08 34.1 69.7 1 11 0.13 1.4e+02 2.7 1.0 6 13 176 183 162 188 0.69 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF155-201 - 538 2.2e-08 34.1 69.7 2 11 0.23 2.6e+02 1.8 5.2 6 35 176 212 174 215 0.77 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF155-201 - 538 2.2e-08 34.1 69.7 3 11 0.0012 1.3 9.2 3.5 6 38 204 243 203 244 0.83 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF155-201 - 538 2.2e-08 34.1 69.7 4 11 4.3e-05 0.049 13.8 1.8 6 34 232 267 230 270 0.89 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF155-201 - 538 2.2e-08 34.1 69.7 5 11 0.016 18 5.5 2.7 6 34 260 295 258 297 0.78 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF155-201 - 538 2.2e-08 34.1 69.7 6 11 0.071 79 3.5 0.3 6 16 288 298 287 311 0.81 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF155-201 - 538 2.2e-08 34.1 69.7 7 11 0.032 36 4.6 0.5 6 19 316 329 315 337 0.81 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF155-201 - 538 2.2e-08 34.1 69.7 8 11 7e-05 0.079 13.1 3.0 6 35 344 380 343 384 0.88 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF155-201 - 538 2.2e-08 34.1 69.7 9 11 0.00015 0.17 12.1 4.8 6 38 400 440 399 442 0.84 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF155-201 - 538 2.2e-08 34.1 69.7 10 11 0.00027 0.31 11.2 3.5 6 38 456 496 455 498 0.68 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF155-201 - 538 2.2e-08 34.1 69.7 11 11 0.001 1.1 9.4 4.2 6 39 484 524 483 525 0.73 Zinc ribbon domain zf-C2H2_6 PF13912.6 27 ZNF155-201 - 538 9.3e-07 28.7 88.8 1 13 0.016 18 5.4 1.5 2 10 176 184 175 198 0.85 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF155-201 - 538 9.3e-07 28.7 88.8 2 13 0.0014 1.5 8.9 0.6 2 12 204 214 203 227 0.80 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF155-201 - 538 9.3e-07 28.7 88.8 3 13 7e-05 0.079 13.0 1.1 2 24 232 254 232 257 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF155-201 - 538 9.3e-07 28.7 88.8 4 13 0.31 3.5e+02 1.4 0.3 2 11 260 269 260 282 0.87 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF155-201 - 538 9.3e-07 28.7 88.8 5 13 0.00093 1 9.4 1.1 2 11 288 297 288 298 0.96 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF155-201 - 538 9.3e-07 28.7 88.8 6 13 8.7e-05 0.097 12.7 0.5 2 20 316 334 316 334 0.86 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF155-201 - 538 9.3e-07 28.7 88.8 7 13 0.049 54 3.9 0.4 2 11 344 353 344 353 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF155-201 - 538 9.3e-07 28.7 88.8 8 13 0.00028 0.31 11.1 1.3 2 12 372 382 372 382 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF155-201 - 538 9.3e-07 28.7 88.8 9 13 0.0041 4.6 7.3 2.6 2 25 400 423 399 425 0.91 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF155-201 - 538 9.3e-07 28.7 88.8 10 13 0.024 27 4.9 0.3 2 13 428 439 428 447 0.91 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF155-201 - 538 9.3e-07 28.7 88.8 11 13 0.002 2.2 8.3 2.0 2 13 456 467 456 479 0.81 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF155-201 - 538 9.3e-07 28.7 88.8 12 13 1.4 1.6e+03 -0.8 0.3 2 11 484 493 484 494 0.88 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF155-201 - 538 9.3e-07 28.7 88.8 13 13 6.3 7.1e+03 -2.8 0.2 3 12 513 522 513 523 0.83 C2H2-type zinc finger # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF155-201.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF155-201.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF155-201.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF155-201.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF155-201.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:00:31 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZNF155-202 - 549 2.3e-78 255.4 94.6 1 14 1.4 1.7e+03 -0.3 0.1 8 14 152 158 151 166 0.80 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF155-202 - 549 2.3e-78 255.4 94.6 2 14 0.0068 8.2 7.1 0.3 12 23 184 195 182 196 0.89 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF155-202 - 549 2.3e-78 255.4 94.6 3 14 7e-07 0.00084 19.7 0.1 5 25 205 225 201 226 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF155-202 - 549 2.3e-78 255.4 94.6 4 14 1.9e-11 2.3e-08 34.1 1.6 1 25 229 253 229 254 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF155-202 - 549 2.3e-78 255.4 94.6 5 14 1.4e-09 1.6e-06 28.2 0.3 1 26 257 282 257 282 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF155-202 - 549 2.3e-78 255.4 94.6 6 14 9.5e-11 1.1e-07 31.9 1.5 2 24 286 308 285 309 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF155-202 - 549 2.3e-78 255.4 94.6 7 14 1.4e-09 1.7e-06 28.2 1.9 2 24 314 336 313 338 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF155-202 - 549 2.3e-78 255.4 94.6 8 14 4.9e-11 5.8e-08 32.8 0.7 1 24 341 364 341 365 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF155-202 - 549 2.3e-78 255.4 94.6 9 14 1.9e-09 2.3e-06 27.7 1.8 2 24 370 392 369 393 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF155-202 - 549 2.3e-78 255.4 94.6 10 14 2.1e-08 2.5e-05 24.5 0.5 4 24 400 420 398 422 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF155-202 - 549 2.3e-78 255.4 94.6 11 14 1.3e-10 1.6e-07 31.5 0.4 2 26 426 450 425 450 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF155-202 - 549 2.3e-78 255.4 94.6 12 14 4.3e-11 5.1e-08 33.0 0.4 1 25 453 477 453 478 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF155-202 - 549 2.3e-78 255.4 94.6 13 14 0.00024 0.28 11.7 4.9 5 23 485 503 483 506 0.90 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF155-202 - 549 2.3e-78 255.4 94.6 14 14 0.035 42 4.8 0.2 11 26 519 534 509 534 0.90 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZNF155-202 - 549 6.6e-51 168.0 98.4 1 13 4.8e-06 0.0057 17.0 1.7 1 23 187 209 187 209 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF155-202 - 549 6.6e-51 168.0 98.4 2 13 5.7e-09 6.8e-06 26.3 1.8 1 23 215 237 215 237 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF155-202 - 549 6.6e-51 168.0 98.4 3 13 1.8e-08 2.1e-05 24.7 0.8 1 23 243 265 243 265 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF155-202 - 549 6.6e-51 168.0 98.4 4 13 4.1e-06 0.0049 17.3 0.4 1 23 271 293 271 293 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF155-202 - 549 6.6e-51 168.0 98.4 5 13 3.6e-06 0.0043 17.4 2.3 1 23 299 321 299 321 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF155-202 - 549 6.6e-51 168.0 98.4 6 13 2.5e-05 0.03 14.8 5.3 1 23 327 349 327 349 0.92 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF155-202 - 549 6.6e-51 168.0 98.4 7 13 0.00018 0.21 12.1 0.3 1 23 355 377 355 377 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF155-202 - 549 6.6e-51 168.0 98.4 8 13 2.7e-06 0.0032 17.8 2.7 1 23 383 405 383 405 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF155-202 - 549 6.6e-51 168.0 98.4 9 13 9.5e-09 1.1e-05 25.6 1.1 1 23 411 433 411 433 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF155-202 - 549 6.6e-51 168.0 98.4 10 13 3.4e-07 0.00041 20.7 0.4 1 23 439 461 439 461 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF155-202 - 549 6.6e-51 168.0 98.4 11 13 5.9e-07 0.0007 19.9 0.9 1 23 467 489 467 489 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF155-202 - 549 6.6e-51 168.0 98.4 12 13 0.011 13 6.5 0.5 1 12 495 506 495 510 0.83 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF155-202 - 549 6.6e-51 168.0 98.4 13 13 0.0011 1.3 9.6 0.3 2 16 524 538 523 539 0.90 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZNF155-202 - 549 2.4e-30 102.6 92.3 1 13 0.0024 2.9 9.0 1.4 1 23 187 209 187 210 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF155-202 - 549 2.4e-30 102.6 92.3 2 13 3.2e-06 0.0038 17.9 1.7 1 23 215 237 215 238 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF155-202 - 549 2.4e-30 102.6 92.3 3 13 7e-07 0.00083 20.0 0.8 1 23 243 265 243 266 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF155-202 - 549 2.4e-30 102.6 92.3 4 13 0.0015 1.8 9.6 0.4 1 23 271 293 271 294 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF155-202 - 549 2.4e-30 102.6 92.3 5 13 0.0001 0.12 13.3 1.6 1 23 299 321 299 322 0.90 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF155-202 - 549 2.4e-30 102.6 92.3 6 13 0.00046 0.55 11.2 4.3 1 23 327 349 327 350 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF155-202 - 549 2.4e-30 102.6 92.3 7 13 0.00043 0.51 11.3 0.3 1 23 355 377 355 378 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF155-202 - 549 2.4e-30 102.6 92.3 8 13 0.00024 0.29 12.1 2.9 1 23 383 405 383 406 0.89 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF155-202 - 549 2.4e-30 102.6 92.3 9 13 2.2e-06 0.0026 18.4 1.1 1 23 411 433 411 434 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF155-202 - 549 2.4e-30 102.6 92.3 10 13 7.7e-05 0.092 13.6 0.3 1 23 439 461 439 462 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF155-202 - 549 2.4e-30 102.6 92.3 11 13 1.9e-05 0.022 15.5 0.7 1 23 467 489 467 489 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF155-202 - 549 2.4e-30 102.6 92.3 12 13 0.15 1.8e+02 3.4 0.2 1 10 495 504 495 510 0.86 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF155-202 - 549 2.4e-30 102.6 92.3 13 13 0.042 50 5.1 0.1 2 14 524 536 523 540 0.84 C2H2-type zinc finger KRAB PF01352.27 42 ZNF155-202 - 549 4.3e-23 80.7 0.1 1 1 3.6e-26 4.3e-23 80.7 0.1 2 42 19 59 18 59 0.98 KRAB box zf-C2H2_jaz PF12171.8 27 ZNF155-202 - 549 5.4e-18 64.8 63.5 1 14 9 1.1e+04 -3.1 0.1 5 17 9 21 9 22 0.72 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF155-202 - 549 5.4e-18 64.8 63.5 2 14 1.8 2.2e+03 -0.9 0.1 2 10 187 195 186 196 0.83 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF155-202 - 549 5.4e-18 64.8 63.5 3 14 0.00027 0.32 11.3 0.3 2 22 215 235 214 235 0.95 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF155-202 - 549 5.4e-18 64.8 63.5 4 14 0.00025 0.3 11.4 0.0 2 22 243 263 242 263 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF155-202 - 549 5.4e-18 64.8 63.5 5 14 3.4e-06 0.0041 17.4 0.2 2 22 271 291 270 291 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF155-202 - 549 5.4e-18 64.8 63.5 6 14 0.021 25 5.3 0.4 2 11 299 308 298 317 0.87 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF155-202 - 549 5.4e-18 64.8 63.5 7 14 0.0004 0.48 10.8 1.2 2 20 327 345 326 346 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF155-202 - 549 5.4e-18 64.8 63.5 8 14 0.022 26 5.2 0.1 2 20 355 373 354 374 0.81 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF155-202 - 549 5.4e-18 64.8 63.5 9 14 0.032 38 4.7 0.6 2 12 383 393 382 403 0.78 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF155-202 - 549 5.4e-18 64.8 63.5 10 14 4.5e-06 0.0054 17.0 1.8 2 24 411 433 410 434 0.95 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF155-202 - 549 5.4e-18 64.8 63.5 11 14 0.0039 4.7 7.6 0.1 2 22 439 459 438 459 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF155-202 - 549 5.4e-18 64.8 63.5 12 14 5.6e-05 0.067 13.5 0.1 2 22 467 487 466 487 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF155-202 - 549 5.4e-18 64.8 63.5 13 14 2.1 2.5e+03 -1.1 0.2 2 9 495 502 494 503 0.86 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF155-202 - 549 5.4e-18 64.8 63.5 14 14 1.6 1.9e+03 -0.7 0.0 3 15 524 536 522 539 0.79 Zinc-finger double-stranded RNA-binding zf_UBZ PF18439.1 32 ZNF155-202 - 549 5.7e-10 38.6 64.0 1 14 5 5.9e+03 -3.0 0.1 7 13 163 169 163 170 0.85 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF155-202 - 549 5.7e-10 38.6 64.0 2 14 0.0014 1.7 8.3 2.0 2 12 186 196 185 197 0.92 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF155-202 - 549 5.7e-10 38.6 64.0 3 14 0.0024 2.9 7.6 0.3 3 21 215 234 213 234 0.90 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF155-202 - 549 5.7e-10 38.6 64.0 4 14 0.011 14 5.4 0.1 3 13 243 253 241 261 0.84 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF155-202 - 549 5.7e-10 38.6 64.0 5 14 0.00032 0.38 10.4 0.3 3 20 271 289 269 290 0.92 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF155-202 - 549 5.7e-10 38.6 64.0 6 14 0.018 21 4.8 0.1 3 15 299 311 297 318 0.76 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF155-202 - 549 5.7e-10 38.6 64.0 7 14 0.032 38 4.0 0.2 3 14 327 338 325 345 0.81 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF155-202 - 549 5.7e-10 38.6 64.0 8 14 0.023 28 4.4 0.1 3 12 355 364 353 373 0.88 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF155-202 - 549 5.7e-10 38.6 64.0 9 14 0.013 16 5.2 0.2 3 12 383 392 381 396 0.89 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF155-202 - 549 5.7e-10 38.6 64.0 10 14 0.00033 0.39 10.3 0.2 2 21 410 430 409 430 0.92 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF155-202 - 549 5.7e-10 38.6 64.0 11 14 0.019 23 4.7 0.1 3 10 439 446 437 457 0.90 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF155-202 - 549 5.7e-10 38.6 64.0 12 14 0.003 3.6 7.3 0.1 3 15 467 479 465 486 0.80 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF155-202 - 549 5.7e-10 38.6 64.0 13 14 0.015 18 5.0 0.2 3 12 495 504 493 507 0.86 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF155-202 - 549 5.7e-10 38.6 64.0 14 14 0.37 4.5e+02 0.6 0.5 4 11 524 531 523 534 0.84 Ubiquitin-Binding Zinc Finger Zn-ribbon_8 PF09723.10 40 ZNF155-202 - 549 2.1e-08 34.1 69.4 1 11 0.092 1.1e+02 3.0 0.5 6 13 187 194 173 196 0.66 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF155-202 - 549 2.1e-08 34.1 69.4 2 11 0.22 2.6e+02 1.8 5.2 6 35 187 223 185 226 0.77 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF155-202 - 549 2.1e-08 34.1 69.4 3 11 0.0011 1.3 9.2 3.5 6 38 215 254 214 255 0.83 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF155-202 - 549 2.1e-08 34.1 69.4 4 11 3.5e-05 0.041 14.0 1.6 6 34 243 278 241 282 0.89 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF155-202 - 549 2.1e-08 34.1 69.4 5 11 0.014 17 5.6 2.5 6 34 271 306 270 308 0.78 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF155-202 - 549 2.1e-08 34.1 69.4 6 11 0.07 84 3.4 0.3 6 16 299 309 298 321 0.81 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF155-202 - 549 2.1e-08 34.1 69.4 7 11 0.031 37 4.6 0.5 6 19 327 340 326 348 0.81 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF155-202 - 549 2.1e-08 34.1 69.4 8 11 7e-05 0.083 13.0 3.1 6 35 355 391 354 394 0.88 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF155-202 - 549 2.1e-08 34.1 69.4 9 11 0.00014 0.16 12.1 4.7 6 38 411 451 410 453 0.84 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF155-202 - 549 2.1e-08 34.1 69.4 10 11 0.00027 0.32 11.2 3.6 6 38 467 507 466 509 0.68 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF155-202 - 549 2.1e-08 34.1 69.4 11 11 0.00097 1.2 9.4 4.2 6 39 495 535 494 536 0.73 Zinc ribbon domain # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF155-202.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF155-202.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF155-202.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF155-202.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF155-202.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:00:31 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF155-203.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF155-203.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF155-203.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF155-203.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF155-203.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:00:32 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF155-204.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF155-204.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF155-204.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF155-204.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF155-204.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:00:32 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF155-205.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF155-205.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF155-205.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF155-205.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF155-205.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:00:32 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF155-206.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF155-206.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF155-206.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF155-206.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF155-206.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:00:33 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZNF155-207 - 538 1.7e-78 255.8 94.6 1 14 1.5 1.7e+03 -0.2 0.1 8 14 141 147 140 155 0.80 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF155-207 - 538 1.7e-78 255.8 94.6 2 14 0.0071 8 7.1 0.3 12 23 173 184 171 185 0.89 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF155-207 - 538 1.7e-78 255.8 94.6 3 14 7.3e-07 0.00082 19.7 0.1 5 25 194 214 190 215 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF155-207 - 538 1.7e-78 255.8 94.6 4 14 2e-11 2.2e-08 34.1 1.6 1 25 218 242 218 243 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF155-207 - 538 1.7e-78 255.8 94.6 5 14 1.4e-09 1.6e-06 28.3 0.3 1 26 246 271 246 271 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF155-207 - 538 1.7e-78 255.8 94.6 6 14 9.9e-11 1.1e-07 31.9 1.5 2 24 275 297 274 298 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF155-207 - 538 1.7e-78 255.8 94.6 7 14 1.5e-09 1.7e-06 28.2 1.9 2 24 303 325 302 327 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF155-207 - 538 1.7e-78 255.8 94.6 8 14 5.1e-11 5.7e-08 32.8 0.7 1 24 330 353 330 354 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF155-207 - 538 1.7e-78 255.8 94.6 9 14 2e-09 2.3e-06 27.8 1.8 2 24 359 381 358 382 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF155-207 - 538 1.7e-78 255.8 94.6 10 14 2.2e-08 2.4e-05 24.5 0.5 4 24 389 409 387 411 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF155-207 - 538 1.7e-78 255.8 94.6 11 14 1.4e-10 1.5e-07 31.5 0.4 2 26 415 439 414 439 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF155-207 - 538 1.7e-78 255.8 94.6 12 14 4.5e-11 5e-08 33.0 0.4 1 25 442 466 442 467 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF155-207 - 538 1.7e-78 255.8 94.6 13 14 0.00025 0.28 11.7 4.9 5 23 474 492 472 495 0.90 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF155-207 - 538 1.7e-78 255.8 94.6 14 14 0.037 41 4.8 0.2 11 26 508 523 498 523 0.90 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZNF155-207 - 538 4.9e-51 168.4 98.4 1 13 5e-06 0.0056 17.1 1.7 1 23 176 198 176 198 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF155-207 - 538 4.9e-51 168.4 98.4 2 13 5.9e-09 6.6e-06 26.3 1.8 1 23 204 226 204 226 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF155-207 - 538 4.9e-51 168.4 98.4 3 13 1.9e-08 2.1e-05 24.7 0.8 1 23 232 254 232 254 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF155-207 - 538 4.9e-51 168.4 98.4 4 13 4.3e-06 0.0048 17.3 0.4 1 23 260 282 260 282 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF155-207 - 538 4.9e-51 168.4 98.4 5 13 3.7e-06 0.0042 17.5 2.3 1 23 288 310 288 310 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF155-207 - 538 4.9e-51 168.4 98.4 6 13 2.6e-05 0.03 14.8 5.3 1 23 316 338 316 338 0.92 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF155-207 - 538 4.9e-51 168.4 98.4 7 13 0.00018 0.2 12.1 0.3 1 23 344 366 344 366 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF155-207 - 538 4.9e-51 168.4 98.4 8 13 2.8e-06 0.0031 17.9 2.7 1 23 372 394 372 394 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF155-207 - 538 4.9e-51 168.4 98.4 9 13 9.9e-09 1.1e-05 25.6 1.1 1 23 400 422 400 422 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF155-207 - 538 4.9e-51 168.4 98.4 10 13 3.5e-07 0.0004 20.7 0.4 1 23 428 450 428 450 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF155-207 - 538 4.9e-51 168.4 98.4 11 13 6.1e-07 0.00068 19.9 0.9 1 23 456 478 456 478 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF155-207 - 538 4.9e-51 168.4 98.4 12 13 0.011 12 6.5 0.5 1 12 484 495 484 499 0.83 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF155-207 - 538 4.9e-51 168.4 98.4 13 13 0.0012 1.3 9.6 0.3 2 16 513 527 512 528 0.90 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZNF155-207 - 538 1.8e-30 103.0 92.3 1 13 0.0025 2.8 9.0 1.4 1 23 176 198 176 199 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF155-207 - 538 1.8e-30 103.0 92.3 2 13 3.3e-06 0.0037 18.0 1.7 1 23 204 226 204 227 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF155-207 - 538 1.8e-30 103.0 92.3 3 13 7.3e-07 0.00081 20.0 0.8 1 23 232 254 232 255 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF155-207 - 538 1.8e-30 103.0 92.3 4 13 0.0015 1.7 9.7 0.4 1 23 260 282 260 283 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF155-207 - 538 1.8e-30 103.0 92.3 5 13 0.0001 0.12 13.3 1.6 1 23 288 310 288 311 0.90 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF155-207 - 538 1.8e-30 103.0 92.3 6 13 0.00048 0.54 11.2 4.3 1 23 316 338 316 339 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF155-207 - 538 1.8e-30 103.0 92.3 7 13 0.00044 0.5 11.4 0.3 1 23 344 366 344 367 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF155-207 - 538 1.8e-30 103.0 92.3 8 13 0.00025 0.28 12.1 2.9 1 23 372 394 372 395 0.89 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF155-207 - 538 1.8e-30 103.0 92.3 9 13 2.3e-06 0.0026 18.5 1.1 1 23 400 422 400 423 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF155-207 - 538 1.8e-30 103.0 92.3 10 13 8e-05 0.09 13.7 0.3 1 23 428 450 428 451 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF155-207 - 538 1.8e-30 103.0 92.3 11 13 1.9e-05 0.022 15.6 0.7 1 23 456 478 456 478 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF155-207 - 538 1.8e-30 103.0 92.3 12 13 0.16 1.8e+02 3.4 0.2 1 10 484 493 484 499 0.86 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF155-207 - 538 1.8e-30 103.0 92.3 13 13 0.044 49 5.1 0.1 2 14 513 525 512 529 0.84 C2H2-type zinc finger KRAB PF01352.27 42 ZNF155-207 - 538 4.2e-23 80.7 0.1 1 1 3.8e-26 4.2e-23 80.7 0.1 2 42 8 48 7 48 0.98 KRAB box zf-C2H2_jaz PF12171.8 27 ZNF155-207 - 538 5.4e-19 68.0 60.3 1 13 1.9 2.2e+03 -0.9 0.1 2 10 176 184 175 185 0.83 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF155-207 - 538 5.4e-19 68.0 60.3 2 13 0.00028 0.32 11.4 0.3 2 22 204 224 203 224 0.95 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF155-207 - 538 5.4e-19 68.0 60.3 3 13 0.00026 0.29 11.5 0.0 2 22 232 252 231 252 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF155-207 - 538 5.4e-19 68.0 60.3 4 13 3.6e-06 0.004 17.4 0.2 2 22 260 280 259 280 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF155-207 - 538 5.4e-19 68.0 60.3 5 13 0.022 24 5.4 0.4 2 11 288 297 287 306 0.87 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF155-207 - 538 5.4e-19 68.0 60.3 6 13 0.00042 0.47 10.8 1.2 2 20 316 334 315 335 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF155-207 - 538 5.4e-19 68.0 60.3 7 13 0.023 25 5.3 0.1 2 20 344 362 343 363 0.81 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF155-207 - 538 5.4e-19 68.0 60.3 8 13 0.033 37 4.8 0.6 2 12 372 382 371 392 0.78 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF155-207 - 538 5.4e-19 68.0 60.3 9 13 4.7e-06 0.0053 17.0 1.8 2 24 400 422 399 423 0.95 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF155-207 - 538 5.4e-19 68.0 60.3 10 13 0.0041 4.6 7.6 0.1 2 22 428 448 427 448 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF155-207 - 538 5.4e-19 68.0 60.3 11 13 5.8e-05 0.065 13.5 0.1 2 22 456 476 455 476 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF155-207 - 538 5.4e-19 68.0 60.3 12 13 2.2 2.5e+03 -1.1 0.2 2 9 484 491 483 492 0.86 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF155-207 - 538 5.4e-19 68.0 60.3 13 13 1.7 1.9e+03 -0.7 0.0 3 15 513 525 511 528 0.79 Zinc-finger double-stranded RNA-binding zf_UBZ PF18439.1 32 ZNF155-207 - 538 4.4e-10 39.0 64.0 1 14 5.2 5.8e+03 -3.0 0.1 7 13 152 158 152 159 0.85 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF155-207 - 538 4.4e-10 39.0 64.0 2 14 0.0015 1.7 8.3 2.0 2 12 175 185 174 186 0.92 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF155-207 - 538 4.4e-10 39.0 64.0 3 14 0.0025 2.8 7.6 0.3 3 21 204 223 202 223 0.90 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF155-207 - 538 4.4e-10 39.0 64.0 4 14 0.012 13 5.5 0.1 3 13 232 242 230 250 0.84 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF155-207 - 538 4.4e-10 39.0 64.0 5 14 0.00033 0.37 10.4 0.3 3 20 260 278 258 279 0.92 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF155-207 - 538 4.4e-10 39.0 64.0 6 14 0.019 21 4.8 0.1 3 15 288 300 286 307 0.76 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF155-207 - 538 4.4e-10 39.0 64.0 7 14 0.033 37 4.0 0.2 3 14 316 327 314 334 0.81 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF155-207 - 538 4.4e-10 39.0 64.0 8 14 0.024 27 4.5 0.1 3 12 344 353 342 362 0.88 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF155-207 - 538 4.4e-10 39.0 64.0 9 14 0.014 15 5.3 0.2 3 12 372 381 370 385 0.89 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF155-207 - 538 4.4e-10 39.0 64.0 10 14 0.00034 0.38 10.4 0.2 2 21 399 419 398 419 0.92 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF155-207 - 538 4.4e-10 39.0 64.0 11 14 0.02 22 4.7 0.1 3 10 428 435 426 446 0.90 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF155-207 - 538 4.4e-10 39.0 64.0 12 14 0.0032 3.5 7.3 0.1 3 15 456 468 454 475 0.80 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF155-207 - 538 4.4e-10 39.0 64.0 13 14 0.016 18 5.0 0.2 3 12 484 493 482 496 0.86 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF155-207 - 538 4.4e-10 39.0 64.0 14 14 0.39 4.4e+02 0.6 0.5 4 11 513 520 512 523 0.84 Ubiquitin-Binding Zinc Finger Zn-ribbon_8 PF09723.10 40 ZNF155-207 - 538 2.2e-08 34.1 69.7 1 11 0.13 1.4e+02 2.7 1.0 6 13 176 183 162 188 0.69 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF155-207 - 538 2.2e-08 34.1 69.7 2 11 0.23 2.6e+02 1.8 5.2 6 35 176 212 174 215 0.77 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF155-207 - 538 2.2e-08 34.1 69.7 3 11 0.0012 1.3 9.2 3.5 6 38 204 243 203 244 0.83 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF155-207 - 538 2.2e-08 34.1 69.7 4 11 4.3e-05 0.049 13.8 1.8 6 34 232 267 230 270 0.89 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF155-207 - 538 2.2e-08 34.1 69.7 5 11 0.016 18 5.5 2.7 6 34 260 295 258 297 0.78 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF155-207 - 538 2.2e-08 34.1 69.7 6 11 0.071 79 3.5 0.3 6 16 288 298 287 311 0.81 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF155-207 - 538 2.2e-08 34.1 69.7 7 11 0.032 36 4.6 0.5 6 19 316 329 315 337 0.81 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF155-207 - 538 2.2e-08 34.1 69.7 8 11 7e-05 0.079 13.1 3.0 6 35 344 380 343 384 0.88 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF155-207 - 538 2.2e-08 34.1 69.7 9 11 0.00015 0.17 12.1 4.8 6 38 400 440 399 442 0.84 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF155-207 - 538 2.2e-08 34.1 69.7 10 11 0.00027 0.31 11.2 3.5 6 38 456 496 455 498 0.68 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF155-207 - 538 2.2e-08 34.1 69.7 11 11 0.001 1.1 9.4 4.2 6 39 484 524 483 525 0.73 Zinc ribbon domain zf-C2H2_6 PF13912.6 27 ZNF155-207 - 538 9.3e-07 28.7 88.8 1 13 0.016 18 5.4 1.5 2 10 176 184 175 198 0.85 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF155-207 - 538 9.3e-07 28.7 88.8 2 13 0.0014 1.5 8.9 0.6 2 12 204 214 203 227 0.80 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF155-207 - 538 9.3e-07 28.7 88.8 3 13 7e-05 0.079 13.0 1.1 2 24 232 254 232 257 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF155-207 - 538 9.3e-07 28.7 88.8 4 13 0.31 3.5e+02 1.4 0.3 2 11 260 269 260 282 0.87 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF155-207 - 538 9.3e-07 28.7 88.8 5 13 0.00093 1 9.4 1.1 2 11 288 297 288 298 0.96 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF155-207 - 538 9.3e-07 28.7 88.8 6 13 8.7e-05 0.097 12.7 0.5 2 20 316 334 316 334 0.86 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF155-207 - 538 9.3e-07 28.7 88.8 7 13 0.049 54 3.9 0.4 2 11 344 353 344 353 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF155-207 - 538 9.3e-07 28.7 88.8 8 13 0.00028 0.31 11.1 1.3 2 12 372 382 372 382 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF155-207 - 538 9.3e-07 28.7 88.8 9 13 0.0041 4.6 7.3 2.6 2 25 400 423 399 425 0.91 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF155-207 - 538 9.3e-07 28.7 88.8 10 13 0.024 27 4.9 0.3 2 13 428 439 428 447 0.91 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF155-207 - 538 9.3e-07 28.7 88.8 11 13 0.002 2.2 8.3 2.0 2 13 456 467 456 479 0.81 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF155-207 - 538 9.3e-07 28.7 88.8 12 13 1.4 1.6e+03 -0.8 0.3 2 11 484 493 484 494 0.88 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF155-207 - 538 9.3e-07 28.7 88.8 13 13 6.3 7.1e+03 -2.8 0.2 3 12 513 522 513 523 0.83 C2H2-type zinc finger # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF155-207.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF155-207.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF155-207.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF155-207.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF155-207.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:00:33 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF155-208.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF155-208.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF155-208.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF155-208.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF155-208.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:00:34 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZNF155-209 - 538 1.7e-78 255.8 94.6 1 14 1.5 1.7e+03 -0.2 0.1 8 14 141 147 140 155 0.80 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF155-209 - 538 1.7e-78 255.8 94.6 2 14 0.0071 8 7.1 0.3 12 23 173 184 171 185 0.89 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF155-209 - 538 1.7e-78 255.8 94.6 3 14 7.3e-07 0.00082 19.7 0.1 5 25 194 214 190 215 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF155-209 - 538 1.7e-78 255.8 94.6 4 14 2e-11 2.2e-08 34.1 1.6 1 25 218 242 218 243 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF155-209 - 538 1.7e-78 255.8 94.6 5 14 1.4e-09 1.6e-06 28.3 0.3 1 26 246 271 246 271 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF155-209 - 538 1.7e-78 255.8 94.6 6 14 9.9e-11 1.1e-07 31.9 1.5 2 24 275 297 274 298 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF155-209 - 538 1.7e-78 255.8 94.6 7 14 1.5e-09 1.7e-06 28.2 1.9 2 24 303 325 302 327 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF155-209 - 538 1.7e-78 255.8 94.6 8 14 5.1e-11 5.7e-08 32.8 0.7 1 24 330 353 330 354 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF155-209 - 538 1.7e-78 255.8 94.6 9 14 2e-09 2.3e-06 27.8 1.8 2 24 359 381 358 382 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF155-209 - 538 1.7e-78 255.8 94.6 10 14 2.2e-08 2.4e-05 24.5 0.5 4 24 389 409 387 411 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF155-209 - 538 1.7e-78 255.8 94.6 11 14 1.4e-10 1.5e-07 31.5 0.4 2 26 415 439 414 439 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF155-209 - 538 1.7e-78 255.8 94.6 12 14 4.5e-11 5e-08 33.0 0.4 1 25 442 466 442 467 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF155-209 - 538 1.7e-78 255.8 94.6 13 14 0.00025 0.28 11.7 4.9 5 23 474 492 472 495 0.90 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF155-209 - 538 1.7e-78 255.8 94.6 14 14 0.037 41 4.8 0.2 11 26 508 523 498 523 0.90 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZNF155-209 - 538 4.9e-51 168.4 98.4 1 13 5e-06 0.0056 17.1 1.7 1 23 176 198 176 198 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF155-209 - 538 4.9e-51 168.4 98.4 2 13 5.9e-09 6.6e-06 26.3 1.8 1 23 204 226 204 226 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF155-209 - 538 4.9e-51 168.4 98.4 3 13 1.9e-08 2.1e-05 24.7 0.8 1 23 232 254 232 254 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF155-209 - 538 4.9e-51 168.4 98.4 4 13 4.3e-06 0.0048 17.3 0.4 1 23 260 282 260 282 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF155-209 - 538 4.9e-51 168.4 98.4 5 13 3.7e-06 0.0042 17.5 2.3 1 23 288 310 288 310 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF155-209 - 538 4.9e-51 168.4 98.4 6 13 2.6e-05 0.03 14.8 5.3 1 23 316 338 316 338 0.92 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF155-209 - 538 4.9e-51 168.4 98.4 7 13 0.00018 0.2 12.1 0.3 1 23 344 366 344 366 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF155-209 - 538 4.9e-51 168.4 98.4 8 13 2.8e-06 0.0031 17.9 2.7 1 23 372 394 372 394 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF155-209 - 538 4.9e-51 168.4 98.4 9 13 9.9e-09 1.1e-05 25.6 1.1 1 23 400 422 400 422 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF155-209 - 538 4.9e-51 168.4 98.4 10 13 3.5e-07 0.0004 20.7 0.4 1 23 428 450 428 450 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF155-209 - 538 4.9e-51 168.4 98.4 11 13 6.1e-07 0.00068 19.9 0.9 1 23 456 478 456 478 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF155-209 - 538 4.9e-51 168.4 98.4 12 13 0.011 12 6.5 0.5 1 12 484 495 484 499 0.83 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF155-209 - 538 4.9e-51 168.4 98.4 13 13 0.0012 1.3 9.6 0.3 2 16 513 527 512 528 0.90 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZNF155-209 - 538 1.8e-30 103.0 92.3 1 13 0.0025 2.8 9.0 1.4 1 23 176 198 176 199 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF155-209 - 538 1.8e-30 103.0 92.3 2 13 3.3e-06 0.0037 18.0 1.7 1 23 204 226 204 227 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF155-209 - 538 1.8e-30 103.0 92.3 3 13 7.3e-07 0.00081 20.0 0.8 1 23 232 254 232 255 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF155-209 - 538 1.8e-30 103.0 92.3 4 13 0.0015 1.7 9.7 0.4 1 23 260 282 260 283 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF155-209 - 538 1.8e-30 103.0 92.3 5 13 0.0001 0.12 13.3 1.6 1 23 288 310 288 311 0.90 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF155-209 - 538 1.8e-30 103.0 92.3 6 13 0.00048 0.54 11.2 4.3 1 23 316 338 316 339 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF155-209 - 538 1.8e-30 103.0 92.3 7 13 0.00044 0.5 11.4 0.3 1 23 344 366 344 367 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF155-209 - 538 1.8e-30 103.0 92.3 8 13 0.00025 0.28 12.1 2.9 1 23 372 394 372 395 0.89 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF155-209 - 538 1.8e-30 103.0 92.3 9 13 2.3e-06 0.0026 18.5 1.1 1 23 400 422 400 423 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF155-209 - 538 1.8e-30 103.0 92.3 10 13 8e-05 0.09 13.7 0.3 1 23 428 450 428 451 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF155-209 - 538 1.8e-30 103.0 92.3 11 13 1.9e-05 0.022 15.6 0.7 1 23 456 478 456 478 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF155-209 - 538 1.8e-30 103.0 92.3 12 13 0.16 1.8e+02 3.4 0.2 1 10 484 493 484 499 0.86 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF155-209 - 538 1.8e-30 103.0 92.3 13 13 0.044 49 5.1 0.1 2 14 513 525 512 529 0.84 C2H2-type zinc finger KRAB PF01352.27 42 ZNF155-209 - 538 4.2e-23 80.7 0.1 1 1 3.8e-26 4.2e-23 80.7 0.1 2 42 8 48 7 48 0.98 KRAB box zf-C2H2_jaz PF12171.8 27 ZNF155-209 - 538 5.4e-19 68.0 60.3 1 13 1.9 2.2e+03 -0.9 0.1 2 10 176 184 175 185 0.83 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF155-209 - 538 5.4e-19 68.0 60.3 2 13 0.00028 0.32 11.4 0.3 2 22 204 224 203 224 0.95 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF155-209 - 538 5.4e-19 68.0 60.3 3 13 0.00026 0.29 11.5 0.0 2 22 232 252 231 252 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF155-209 - 538 5.4e-19 68.0 60.3 4 13 3.6e-06 0.004 17.4 0.2 2 22 260 280 259 280 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF155-209 - 538 5.4e-19 68.0 60.3 5 13 0.022 24 5.4 0.4 2 11 288 297 287 306 0.87 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF155-209 - 538 5.4e-19 68.0 60.3 6 13 0.00042 0.47 10.8 1.2 2 20 316 334 315 335 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF155-209 - 538 5.4e-19 68.0 60.3 7 13 0.023 25 5.3 0.1 2 20 344 362 343 363 0.81 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF155-209 - 538 5.4e-19 68.0 60.3 8 13 0.033 37 4.8 0.6 2 12 372 382 371 392 0.78 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF155-209 - 538 5.4e-19 68.0 60.3 9 13 4.7e-06 0.0053 17.0 1.8 2 24 400 422 399 423 0.95 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF155-209 - 538 5.4e-19 68.0 60.3 10 13 0.0041 4.6 7.6 0.1 2 22 428 448 427 448 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF155-209 - 538 5.4e-19 68.0 60.3 11 13 5.8e-05 0.065 13.5 0.1 2 22 456 476 455 476 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF155-209 - 538 5.4e-19 68.0 60.3 12 13 2.2 2.5e+03 -1.1 0.2 2 9 484 491 483 492 0.86 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF155-209 - 538 5.4e-19 68.0 60.3 13 13 1.7 1.9e+03 -0.7 0.0 3 15 513 525 511 528 0.79 Zinc-finger double-stranded RNA-binding zf_UBZ PF18439.1 32 ZNF155-209 - 538 4.4e-10 39.0 64.0 1 14 5.2 5.8e+03 -3.0 0.1 7 13 152 158 152 159 0.85 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF155-209 - 538 4.4e-10 39.0 64.0 2 14 0.0015 1.7 8.3 2.0 2 12 175 185 174 186 0.92 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF155-209 - 538 4.4e-10 39.0 64.0 3 14 0.0025 2.8 7.6 0.3 3 21 204 223 202 223 0.90 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF155-209 - 538 4.4e-10 39.0 64.0 4 14 0.012 13 5.5 0.1 3 13 232 242 230 250 0.84 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF155-209 - 538 4.4e-10 39.0 64.0 5 14 0.00033 0.37 10.4 0.3 3 20 260 278 258 279 0.92 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF155-209 - 538 4.4e-10 39.0 64.0 6 14 0.019 21 4.8 0.1 3 15 288 300 286 307 0.76 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF155-209 - 538 4.4e-10 39.0 64.0 7 14 0.033 37 4.0 0.2 3 14 316 327 314 334 0.81 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF155-209 - 538 4.4e-10 39.0 64.0 8 14 0.024 27 4.5 0.1 3 12 344 353 342 362 0.88 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF155-209 - 538 4.4e-10 39.0 64.0 9 14 0.014 15 5.3 0.2 3 12 372 381 370 385 0.89 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF155-209 - 538 4.4e-10 39.0 64.0 10 14 0.00034 0.38 10.4 0.2 2 21 399 419 398 419 0.92 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF155-209 - 538 4.4e-10 39.0 64.0 11 14 0.02 22 4.7 0.1 3 10 428 435 426 446 0.90 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF155-209 - 538 4.4e-10 39.0 64.0 12 14 0.0032 3.5 7.3 0.1 3 15 456 468 454 475 0.80 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF155-209 - 538 4.4e-10 39.0 64.0 13 14 0.016 18 5.0 0.2 3 12 484 493 482 496 0.86 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF155-209 - 538 4.4e-10 39.0 64.0 14 14 0.39 4.4e+02 0.6 0.5 4 11 513 520 512 523 0.84 Ubiquitin-Binding Zinc Finger Zn-ribbon_8 PF09723.10 40 ZNF155-209 - 538 2.2e-08 34.1 69.7 1 11 0.13 1.4e+02 2.7 1.0 6 13 176 183 162 188 0.69 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF155-209 - 538 2.2e-08 34.1 69.7 2 11 0.23 2.6e+02 1.8 5.2 6 35 176 212 174 215 0.77 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF155-209 - 538 2.2e-08 34.1 69.7 3 11 0.0012 1.3 9.2 3.5 6 38 204 243 203 244 0.83 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF155-209 - 538 2.2e-08 34.1 69.7 4 11 4.3e-05 0.049 13.8 1.8 6 34 232 267 230 270 0.89 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF155-209 - 538 2.2e-08 34.1 69.7 5 11 0.016 18 5.5 2.7 6 34 260 295 258 297 0.78 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF155-209 - 538 2.2e-08 34.1 69.7 6 11 0.071 79 3.5 0.3 6 16 288 298 287 311 0.81 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF155-209 - 538 2.2e-08 34.1 69.7 7 11 0.032 36 4.6 0.5 6 19 316 329 315 337 0.81 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF155-209 - 538 2.2e-08 34.1 69.7 8 11 7e-05 0.079 13.1 3.0 6 35 344 380 343 384 0.88 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF155-209 - 538 2.2e-08 34.1 69.7 9 11 0.00015 0.17 12.1 4.8 6 38 400 440 399 442 0.84 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF155-209 - 538 2.2e-08 34.1 69.7 10 11 0.00027 0.31 11.2 3.5 6 38 456 496 455 498 0.68 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF155-209 - 538 2.2e-08 34.1 69.7 11 11 0.001 1.1 9.4 4.2 6 39 484 524 483 525 0.73 Zinc ribbon domain zf-C2H2_6 PF13912.6 27 ZNF155-209 - 538 9.3e-07 28.7 88.8 1 13 0.016 18 5.4 1.5 2 10 176 184 175 198 0.85 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF155-209 - 538 9.3e-07 28.7 88.8 2 13 0.0014 1.5 8.9 0.6 2 12 204 214 203 227 0.80 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF155-209 - 538 9.3e-07 28.7 88.8 3 13 7e-05 0.079 13.0 1.1 2 24 232 254 232 257 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF155-209 - 538 9.3e-07 28.7 88.8 4 13 0.31 3.5e+02 1.4 0.3 2 11 260 269 260 282 0.87 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF155-209 - 538 9.3e-07 28.7 88.8 5 13 0.00093 1 9.4 1.1 2 11 288 297 288 298 0.96 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF155-209 - 538 9.3e-07 28.7 88.8 6 13 8.7e-05 0.097 12.7 0.5 2 20 316 334 316 334 0.86 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF155-209 - 538 9.3e-07 28.7 88.8 7 13 0.049 54 3.9 0.4 2 11 344 353 344 353 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF155-209 - 538 9.3e-07 28.7 88.8 8 13 0.00028 0.31 11.1 1.3 2 12 372 382 372 382 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF155-209 - 538 9.3e-07 28.7 88.8 9 13 0.0041 4.6 7.3 2.6 2 25 400 423 399 425 0.91 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF155-209 - 538 9.3e-07 28.7 88.8 10 13 0.024 27 4.9 0.3 2 13 428 439 428 447 0.91 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF155-209 - 538 9.3e-07 28.7 88.8 11 13 0.002 2.2 8.3 2.0 2 13 456 467 456 479 0.81 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF155-209 - 538 9.3e-07 28.7 88.8 12 13 1.4 1.6e+03 -0.8 0.3 2 11 484 493 484 494 0.88 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF155-209 - 538 9.3e-07 28.7 88.8 13 13 6.3 7.1e+03 -2.8 0.2 3 12 513 522 513 523 0.83 C2H2-type zinc finger # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF155-209.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF155-209.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF155-209.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF155-209.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF155-209.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:00:34 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZNF157-201 - 506 4e-92 298.9 82.5 1 14 6.2 5.5e+03 -1.9 0.0 18 24 137 143 121 144 0.68 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF157-201 - 506 4e-92 298.9 82.5 2 14 0.0033 2.9 8.5 0.5 11 24 158 171 151 171 0.84 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF157-201 - 506 4e-92 298.9 82.5 3 14 1.9e-11 1.7e-08 34.5 0.1 1 25 176 200 176 201 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF157-201 - 506 4e-92 298.9 82.5 4 14 1.8e-10 1.6e-07 31.4 0.4 2 25 205 228 204 229 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF157-201 - 506 4e-92 298.9 82.5 5 14 8.2e-11 7.4e-08 32.5 0.4 4 25 235 256 232 257 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF157-201 - 506 4e-92 298.9 82.5 6 14 2.7e-11 2.4e-08 34.0 0.9 3 24 262 283 261 284 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF157-201 - 506 4e-92 298.9 82.5 7 14 7.1e-10 6.4e-07 29.5 1.9 1 24 288 311 288 312 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF157-201 - 506 4e-92 298.9 82.5 8 14 3.9e-11 3.5e-08 33.5 0.4 1 24 316 339 316 340 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF157-201 - 506 4e-92 298.9 82.5 9 14 1.6e-11 1.5e-08 34.7 0.7 2 24 345 367 344 368 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF157-201 - 506 4e-92 298.9 82.5 10 14 5.6e-09 5.1e-06 26.7 0.4 5 24 376 395 375 396 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF157-201 - 506 4e-92 298.9 82.5 11 14 2.1e-09 1.9e-06 28.0 0.2 2 24 401 423 400 424 0.90 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF157-201 - 506 4e-92 298.9 82.5 12 14 1.6e-09 1.4e-06 28.4 1.8 4 24 431 451 428 452 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF157-201 - 506 4e-92 298.9 82.5 13 14 4.8e-10 4.3e-07 30.1 0.2 2 24 457 479 456 479 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF157-201 - 506 4e-92 298.9 82.5 14 14 1 8.9e+02 0.6 0.8 1 11 484 494 484 494 0.88 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZNF157-201 - 506 3.6e-63 206.6 90.3 1 12 9.7e-09 8.7e-06 25.9 2.6 1 23 162 184 162 184 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF157-201 - 506 3.6e-63 206.6 90.3 2 12 1.6e-07 0.00015 22.0 0.2 1 23 190 212 190 212 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF157-201 - 506 3.6e-63 206.6 90.3 3 12 5.1e-09 4.6e-06 26.8 0.6 1 23 218 240 218 240 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF157-201 - 506 3.6e-63 206.6 90.3 4 12 1.7e-08 1.5e-05 25.2 0.5 1 23 246 268 246 268 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF157-201 - 506 3.6e-63 206.6 90.3 5 12 2.5e-07 0.00023 21.5 2.6 1 23 274 296 274 296 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF157-201 - 506 3.6e-63 206.6 90.3 6 12 2.9e-08 2.6e-05 24.4 0.4 1 23 302 324 302 324 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF157-201 - 506 3.6e-63 206.6 90.3 7 12 2.1e-07 0.00019 21.7 1.4 1 23 330 352 330 352 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF157-201 - 506 3.6e-63 206.6 90.3 8 12 1.1e-07 9.5e-05 22.6 1.0 1 23 358 380 358 380 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF157-201 - 506 3.6e-63 206.6 90.3 9 12 4.3e-05 0.038 14.4 0.1 1 23 386 408 386 408 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF157-201 - 506 3.6e-63 206.6 90.3 10 12 7.2e-07 0.00065 20.0 3.7 1 23 414 436 414 436 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF157-201 - 506 3.6e-63 206.6 90.3 11 12 0.00014 0.13 12.8 0.1 1 23 442 464 442 464 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF157-201 - 506 3.6e-63 206.6 90.3 12 12 1.8e-08 1.6e-05 25.1 3.7 1 23 470 492 470 492 0.98 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZNF157-201 - 506 1.2e-33 112.9 91.4 1 13 6.6 5.9e+03 -1.3 0.1 6 18 139 151 137 155 0.80 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF157-201 - 506 1.2e-33 112.9 91.4 2 13 9.9e-05 0.089 13.7 2.6 1 23 162 184 162 185 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF157-201 - 506 1.2e-33 112.9 91.4 3 13 7.1e-05 0.064 14.1 0.3 1 23 190 212 190 213 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF157-201 - 506 1.2e-33 112.9 91.4 4 13 2.7e-05 0.024 15.5 0.5 1 23 218 240 218 241 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF157-201 - 506 1.2e-33 112.9 91.4 5 13 1.8e-06 0.0016 19.1 0.4 1 23 246 268 246 269 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF157-201 - 506 1.2e-33 112.9 91.4 6 13 4.9e-05 0.044 14.6 1.9 1 23 274 296 274 297 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF157-201 - 506 1.2e-33 112.9 91.4 7 13 9.8e-06 0.0087 16.8 0.3 1 23 302 324 302 325 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF157-201 - 506 1.2e-33 112.9 91.4 8 13 4.7e-05 0.042 14.7 0.7 1 23 330 352 330 353 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF157-201 - 506 1.2e-33 112.9 91.4 9 13 0.00013 0.11 13.4 0.9 1 23 358 380 358 381 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF157-201 - 506 1.2e-33 112.9 91.4 10 13 0.0025 2.2 9.3 0.2 1 23 386 408 386 409 0.90 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF157-201 - 506 1.2e-33 112.9 91.4 11 13 6.1e-06 0.0055 17.4 3.2 1 23 414 436 414 437 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF157-201 - 506 1.2e-33 112.9 91.4 12 13 0.0052 4.7 8.3 0.1 1 23 442 464 442 465 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF157-201 - 506 1.2e-33 112.9 91.4 13 13 4.2e-05 0.038 14.8 2.9 1 23 470 492 470 493 0.96 C2H2-type zinc finger KRAB PF01352.27 42 ZNF157-201 - 506 9.2e-23 79.6 0.1 1 1 2e-25 1.8e-22 78.7 0.1 1 42 26 67 26 67 0.99 KRAB box zf-C2H2_6 PF13912.6 27 ZNF157-201 - 506 2.4e-20 72.0 87.5 1 12 0.0054 4.9 7.3 2.2 2 24 162 184 161 187 0.85 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF157-201 - 506 2.4e-20 72.0 87.5 2 12 0.0075 6.7 6.8 0.6 2 24 190 212 190 215 0.88 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF157-201 - 506 2.4e-20 72.0 87.5 3 12 1.1e-05 0.01 15.8 0.7 2 24 218 240 218 243 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF157-201 - 506 2.4e-20 72.0 87.5 4 12 0.0001 0.092 12.8 0.4 2 12 246 256 246 270 0.84 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF157-201 - 506 2.4e-20 72.0 87.5 5 12 4.8e-05 0.043 13.8 1.8 2 24 274 296 274 299 0.89 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF157-201 - 506 2.4e-20 72.0 87.5 6 12 0.0008 0.72 9.9 0.8 2 24 302 324 302 327 0.91 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF157-201 - 506 2.4e-20 72.0 87.5 7 12 0.0054 4.8 7.3 0.8 2 24 330 352 330 355 0.92 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF157-201 - 506 2.4e-20 72.0 87.5 8 12 0.00023 0.21 11.6 0.8 2 21 358 377 358 382 0.82 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF157-201 - 506 2.4e-20 72.0 87.5 9 12 0.0096 8.6 6.5 0.1 2 11 386 395 386 408 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF157-201 - 506 2.4e-20 72.0 87.5 10 12 3.5e-06 0.0032 17.4 3.5 2 24 414 436 414 439 0.96 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF157-201 - 506 2.4e-20 72.0 87.5 11 12 0.0045 4.1 7.5 0.2 2 11 442 451 442 464 0.89 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF157-201 - 506 2.4e-20 72.0 87.5 12 12 0.0027 2.4 8.3 3.7 2 24 470 492 470 493 0.90 C2H2-type zinc finger zf-C2H2_jaz PF12171.8 27 ZNF157-201 - 506 1.7e-11 44.1 49.4 1 10 0.27 2.4e+02 2.2 1.7 2 22 162 182 161 182 0.90 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF157-201 - 506 1.7e-11 44.1 49.4 2 10 0.00094 0.85 10.0 0.1 2 24 190 212 189 212 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF157-201 - 506 1.7e-11 44.1 49.4 3 10 0.00091 0.81 10.0 0.1 2 24 218 240 217 240 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF157-201 - 506 1.7e-11 44.1 49.4 4 10 0.00014 0.13 12.6 0.1 2 24 246 268 245 268 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF157-201 - 506 1.7e-11 44.1 49.4 5 10 0.027 24 5.4 0.2 2 20 274 292 273 296 0.82 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF157-201 - 506 1.7e-11 44.1 49.4 6 10 0.0097 8.7 6.8 0.1 2 22 302 322 301 322 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF157-201 - 506 1.7e-11 44.1 49.4 7 10 0.00042 0.38 11.1 0.2 2 24 330 352 329 352 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF157-201 - 506 1.7e-11 44.1 49.4 8 10 0.74 6.6e+02 0.8 0.1 4 20 360 376 357 378 0.75 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF157-201 - 506 1.7e-11 44.1 49.4 9 10 0.0053 4.7 7.6 1.4 2 24 414 436 413 436 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF157-201 - 506 1.7e-11 44.1 49.4 10 10 0.012 10 6.5 1.1 2 24 470 492 469 493 0.91 Zinc-finger double-stranded RNA-binding Zn-ribbon_8 PF09723.10 40 ZNF157-201 - 506 6.6e-09 35.7 73.0 1 9 0.18 1.6e+02 2.5 1.2 6 14 162 170 139 176 0.83 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF157-201 - 506 6.6e-09 35.7 73.0 2 9 0.0036 3.2 7.9 4.9 6 35 190 226 189 230 0.88 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF157-201 - 506 6.6e-09 35.7 73.0 3 9 4.9e-05 0.044 13.9 6.0 6 37 246 284 245 287 0.88 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF157-201 - 506 6.6e-09 35.7 73.0 4 9 0.0023 2.1 8.6 0.4 6 18 274 286 273 297 0.81 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF157-201 - 506 6.6e-09 35.7 73.0 5 9 0.00033 0.29 11.3 4.5 6 34 302 337 300 343 0.92 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF157-201 - 506 6.6e-09 35.7 73.0 6 9 5.4e-05 0.048 13.8 4.2 6 34 358 393 357 395 0.92 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF157-201 - 506 6.6e-09 35.7 73.0 7 9 6.6e-05 0.059 13.5 4.4 6 34 386 421 385 429 0.90 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF157-201 - 506 6.6e-09 35.7 73.0 8 9 0.0071 6.4 7.0 0.8 6 16 414 424 413 437 0.84 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF157-201 - 506 6.6e-09 35.7 73.0 9 9 0.0016 1.4 9.1 6.4 6 36 442 479 440 483 0.87 Zinc ribbon domain # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF157-201.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF157-201.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF157-201.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF157-201.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF157-201.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:00:35 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZNF16-201 - 682 8.5e-123 395.8 102.4 1 17 0.16 1.1e+02 3.5 0.0 10 24 204 218 195 218 0.79 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF16-201 - 682 8.5e-123 395.8 102.4 2 17 4.5e-05 0.031 14.7 0.0 8 25 230 247 228 248 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF16-201 - 682 8.5e-123 395.8 102.4 3 17 3.4e-06 0.0024 18.2 0.5 7 24 257 274 255 275 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF16-201 - 682 8.5e-123 395.8 102.4 4 17 1.2e-07 8.1e-05 22.9 1.1 2 25 280 303 279 304 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF16-201 - 682 8.5e-123 395.8 102.4 5 17 5.3e-10 3.6e-07 30.3 2.0 1 25 307 331 307 332 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF16-201 - 682 8.5e-123 395.8 102.4 6 17 2.9e-10 2e-07 31.1 0.1 1 25 335 359 335 360 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF16-201 - 682 8.5e-123 395.8 102.4 7 17 1.7e-10 1.1e-07 31.9 1.0 1 25 363 387 363 388 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF16-201 - 682 8.5e-123 395.8 102.4 8 17 2e-10 1.3e-07 31.7 2.4 1 24 391 414 391 416 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF16-201 - 682 8.5e-123 395.8 102.4 9 17 3.2e-11 2.2e-08 34.1 1.3 1 25 419 443 419 444 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF16-201 - 682 8.5e-123 395.8 102.4 10 17 4.3e-10 2.9e-07 30.6 0.4 2 25 448 471 447 472 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF16-201 - 682 8.5e-123 395.8 102.4 11 17 1.3e-11 9e-09 35.4 0.6 2 26 476 500 475 500 0.97 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF16-201 - 682 8.5e-123 395.8 102.4 12 17 1.9e-09 1.3e-06 28.5 0.2 1 25 503 527 503 528 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF16-201 - 682 8.5e-123 395.8 102.4 13 17 1.1e-11 7.6e-09 35.6 0.2 1 25 531 555 531 556 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF16-201 - 682 8.5e-123 395.8 102.4 14 17 2.3e-08 1.6e-05 25.1 0.2 3 25 561 583 560 584 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF16-201 - 682 8.5e-123 395.8 102.4 15 17 8.6e-10 6e-07 29.6 0.7 1 25 587 611 587 612 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF16-201 - 682 8.5e-123 395.8 102.4 16 17 1.8e-10 1.3e-07 31.8 0.2 1 25 615 639 615 640 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF16-201 - 682 8.5e-123 395.8 102.4 17 17 6.3e-09 4.3e-06 26.9 0.0 3 25 645 667 644 668 0.92 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZNF16-201 - 682 2.8e-98 317.3 125.2 1 17 0.023 16 6.2 0.0 3 13 211 221 209 226 0.78 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF16-201 - 682 2.8e-98 317.3 125.2 2 17 9.2e-05 0.063 13.8 0.3 1 17 237 253 237 254 0.89 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF16-201 - 682 2.8e-98 317.3 125.2 3 17 8.2e-06 0.0057 17.1 4.3 1 23 265 287 265 287 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF16-201 - 682 2.8e-98 317.3 125.2 4 17 4.5e-09 3.1e-06 27.3 1.3 1 23 293 315 293 315 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF16-201 - 682 2.8e-98 317.3 125.2 5 17 6.4e-10 4.4e-07 30.0 0.4 1 23 321 343 321 343 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF16-201 - 682 2.8e-98 317.3 125.2 6 17 1.1e-09 7.3e-07 29.3 2.4 1 23 349 371 349 371 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF16-201 - 682 2.8e-98 317.3 125.2 7 17 2.7e-09 1.9e-06 28.0 0.8 1 23 377 399 377 399 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF16-201 - 682 2.8e-98 317.3 125.2 8 17 1.7e-09 1.2e-06 28.7 1.2 1 23 405 427 405 427 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF16-201 - 682 2.8e-98 317.3 125.2 9 17 2.3e-09 1.6e-06 28.2 0.7 1 23 433 455 433 455 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF16-201 - 682 2.8e-98 317.3 125.2 10 17 4.9e-07 0.00034 20.9 0.7 1 23 461 483 461 483 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF16-201 - 682 2.8e-98 317.3 125.2 11 17 1.5e-07 0.0001 22.6 0.4 1 23 489 511 489 511 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF16-201 - 682 2.8e-98 317.3 125.2 12 17 6.1e-09 4.2e-06 26.9 0.9 1 23 517 539 517 539 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF16-201 - 682 2.8e-98 317.3 125.2 13 17 4.2e-09 2.9e-06 27.4 0.5 1 23 545 567 545 567 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF16-201 - 682 2.8e-98 317.3 125.2 14 17 3.2e-08 2.2e-05 24.6 2.9 1 23 573 595 573 595 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF16-201 - 682 2.8e-98 317.3 125.2 15 17 3.9e-08 2.7e-05 24.4 0.4 1 23 601 623 601 623 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF16-201 - 682 2.8e-98 317.3 125.2 16 17 4.4e-08 3.1e-05 24.2 0.4 1 23 629 651 629 651 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF16-201 - 682 2.8e-98 317.3 125.2 17 17 1.3e-06 0.00086 19.6 0.1 1 23 657 679 657 679 0.96 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZNF16-201 - 682 5.3e-52 170.0 116.4 1 17 0.052 36 5.6 0.0 2 17 210 225 209 231 0.79 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF16-201 - 682 5.3e-52 170.0 116.4 2 17 0.00044 0.3 12.0 0.6 1 23 237 259 237 260 0.75 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF16-201 - 682 5.3e-52 170.0 116.4 3 17 0.00019 0.13 13.1 4.2 1 23 265 287 265 288 0.90 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF16-201 - 682 5.3e-52 170.0 116.4 4 17 4.3e-06 0.003 18.3 1.1 1 23 293 315 293 316 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF16-201 - 682 5.3e-52 170.0 116.4 5 17 2.2e-05 0.015 16.1 0.3 1 23 321 343 321 344 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF16-201 - 682 5.3e-52 170.0 116.4 6 17 2e-05 0.013 16.2 1.8 1 23 349 371 349 372 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF16-201 - 682 5.3e-52 170.0 116.4 7 17 1.5e-05 0.01 16.6 1.1 1 23 377 399 377 400 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF16-201 - 682 5.3e-52 170.0 116.4 8 17 2e-05 0.014 16.2 0.9 1 23 405 427 405 428 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF16-201 - 682 5.3e-52 170.0 116.4 9 17 6.5e-06 0.0045 17.7 0.6 1 23 433 455 433 456 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF16-201 - 682 5.3e-52 170.0 116.4 10 17 0.00016 0.11 13.4 0.8 1 23 461 483 461 484 0.84 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF16-201 - 682 5.3e-52 170.0 116.4 11 17 0.00012 0.083 13.8 0.6 1 23 489 511 489 512 0.90 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF16-201 - 682 5.3e-52 170.0 116.4 12 17 0.00024 0.16 12.8 0.7 1 23 517 539 517 540 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF16-201 - 682 5.3e-52 170.0 116.4 13 17 2.7e-06 0.0019 18.9 0.4 1 23 545 567 545 568 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF16-201 - 682 5.3e-52 170.0 116.4 14 17 4.1e-05 0.028 15.2 2.2 1 23 573 595 573 596 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF16-201 - 682 5.3e-52 170.0 116.4 15 17 0.00011 0.075 13.9 0.5 1 23 601 623 601 624 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF16-201 - 682 5.3e-52 170.0 116.4 16 17 4.1e-05 0.028 15.2 0.5 1 23 629 651 629 652 0.90 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF16-201 - 682 5.3e-52 170.0 116.4 17 17 0.0019 1.3 10.1 0.2 3 23 659 679 657 680 0.91 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF16-201 - 682 5.4e-28 96.4 113.8 1 17 0.0058 4 7.6 0.4 3 12 210 219 210 219 0.92 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF16-201 - 682 5.4e-28 96.4 113.8 2 17 0.071 49 4.1 0.3 2 12 237 247 236 248 0.88 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF16-201 - 682 5.4e-28 96.4 113.8 3 17 0.0016 1.1 9.3 0.3 1 12 264 275 264 275 0.91 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF16-201 - 682 5.4e-28 96.4 113.8 4 17 8.4e-05 0.058 13.4 3.1 2 27 293 318 293 318 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF16-201 - 682 5.4e-28 96.4 113.8 5 17 3.6e-05 0.025 14.6 0.4 2 24 321 343 321 346 0.90 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF16-201 - 682 5.4e-28 96.4 113.8 6 17 3.7e-06 0.0026 17.7 1.6 2 24 349 371 349 374 0.95 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF16-201 - 682 5.4e-28 96.4 113.8 7 17 0.017 12 6.0 1.6 2 22 377 397 377 401 0.82 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF16-201 - 682 5.4e-28 96.4 113.8 8 17 0.0012 0.85 9.7 0.4 2 24 405 427 405 430 0.92 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF16-201 - 682 5.4e-28 96.4 113.8 9 17 0.00085 0.58 10.2 0.7 2 24 433 455 433 458 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF16-201 - 682 5.4e-28 96.4 113.8 10 17 3.6e-05 0.025 14.6 0.6 2 21 461 480 461 485 0.91 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF16-201 - 682 5.4e-28 96.4 113.8 11 17 0.00044 0.3 11.1 0.7 2 20 489 507 489 508 0.87 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF16-201 - 682 5.4e-28 96.4 113.8 12 17 0.00047 0.32 11.0 0.7 2 24 517 539 517 542 0.84 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF16-201 - 682 5.4e-28 96.4 113.8 13 17 0.0002 0.14 12.2 0.4 2 12 545 555 545 567 0.88 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF16-201 - 682 5.4e-28 96.4 113.8 14 17 0.00018 0.12 12.4 2.5 2 24 573 595 573 598 0.92 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF16-201 - 682 5.4e-28 96.4 113.8 15 17 0.18 1.3e+02 2.8 0.2 2 12 601 611 601 621 0.89 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF16-201 - 682 5.4e-28 96.4 113.8 16 17 0.00054 0.37 10.8 0.5 2 20 629 647 629 652 0.79 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF16-201 - 682 5.4e-28 96.4 113.8 17 17 0.75 5.2e+02 0.8 0.2 2 12 657 667 657 675 0.83 C2H2-type zinc finger zf-C2H2_jaz PF12171.8 27 ZNF16-201 - 682 3.1e-20 71.9 66.1 1 17 0.37 2.5e+02 2.1 0.0 2 12 209 219 208 221 0.85 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF16-201 - 682 3.1e-20 71.9 66.1 2 17 0.032 22 5.5 0.2 2 19 237 254 236 254 0.89 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF16-201 - 682 3.1e-20 71.9 66.1 3 17 0.022 15 6.0 0.3 4 21 267 284 265 285 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF16-201 - 682 3.1e-20 71.9 66.1 4 17 0.00056 0.38 11.1 2.2 2 24 293 315 292 315 0.95 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF16-201 - 682 3.1e-20 71.9 66.1 5 17 0.0033 2.3 8.6 0.1 2 22 321 341 320 341 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF16-201 - 682 3.1e-20 71.9 66.1 6 17 0.029 20 5.6 0.2 2 20 349 367 348 371 0.89 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF16-201 - 682 3.1e-20 71.9 66.1 7 17 0.019 13 6.2 0.1 2 22 377 397 376 397 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF16-201 - 682 3.1e-20 71.9 66.1 8 17 0.22 1.5e+02 2.8 0.0 2 20 405 423 404 423 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF16-201 - 682 3.1e-20 71.9 66.1 9 17 0.044 30 5.0 0.0 2 21 433 452 432 453 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF16-201 - 682 3.1e-20 71.9 66.1 10 17 0.061 42 4.6 0.1 2 21 461 480 460 481 0.91 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF16-201 - 682 3.1e-20 71.9 66.1 11 17 0.0013 0.89 9.9 0.1 2 21 489 508 488 508 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF16-201 - 682 3.1e-20 71.9 66.1 12 17 0.0075 5.1 7.5 0.0 2 22 517 537 516 537 0.90 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF16-201 - 682 3.1e-20 71.9 66.1 13 17 0.00027 0.19 12.1 0.1 2 22 545 565 544 565 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF16-201 - 682 3.1e-20 71.9 66.1 14 17 0.14 95 3.5 0.8 2 22 573 593 572 593 0.88 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF16-201 - 682 3.1e-20 71.9 66.1 15 17 0.0036 2.5 8.5 0.1 2 21 601 620 600 621 0.91 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF16-201 - 682 3.1e-20 71.9 66.1 16 17 0.012 8.5 6.8 0.1 2 22 629 649 628 649 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF16-201 - 682 3.1e-20 71.9 66.1 17 17 0.24 1.6e+02 2.7 0.1 2 20 657 675 656 677 0.84 Zinc-finger double-stranded RNA-binding Zn-ribbon_8 PF09723.10 40 ZNF16-201 - 682 1e-19 70.4 82.6 1 13 0.017 11 6.2 2.7 8 35 211 245 208 248 0.78 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF16-201 - 682 1e-19 70.4 82.6 2 13 0.00043 0.3 11.2 2.9 6 36 237 274 236 276 0.74 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF16-201 - 682 1e-19 70.4 82.6 3 13 0.00038 0.26 11.4 4.6 6 35 265 301 260 305 0.85 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF16-201 - 682 1e-19 70.4 82.6 4 13 2.6e-05 0.018 15.2 4.0 6 38 293 332 292 333 0.88 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF16-201 - 682 1e-19 70.4 82.6 5 13 3.3e-06 0.0023 18.0 2.4 6 38 321 360 319 362 0.93 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF16-201 - 682 1e-19 70.4 82.6 6 13 3.8e-05 0.026 14.6 3.2 6 39 377 417 376 418 0.93 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF16-201 - 682 1e-19 70.4 82.6 7 13 3.1e-05 0.022 14.9 1.1 6 34 433 468 432 471 0.86 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF16-201 - 682 1e-19 70.4 82.6 8 13 5.6e-05 0.039 14.1 1.0 6 35 489 525 488 529 0.88 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF16-201 - 682 1e-19 70.4 82.6 9 13 7.3e-06 0.005 16.9 2.1 6 38 545 584 544 586 0.89 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF16-201 - 682 1e-19 70.4 82.6 10 13 0.0011 0.78 9.9 3.1 7 34 574 608 573 613 0.90 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF16-201 - 682 1e-19 70.4 82.6 11 13 0.0021 1.5 9.0 3.3 6 35 601 637 600 641 0.81 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF16-201 - 682 1e-19 70.4 82.6 12 13 4e-05 0.027 14.6 1.4 6 36 629 666 628 670 0.89 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF16-201 - 682 1e-19 70.4 82.6 13 13 0.021 14 5.8 0.1 6 20 657 671 656 677 0.83 Zinc ribbon domain XPA_N PF01286.18 32 ZNF16-201 - 682 4.4e-17 61.8 60.7 1 17 0.021 15 5.7 0.2 3 12 210 219 208 220 0.87 XPA protein N-terminal XPA_N PF01286.18 32 ZNF16-201 - 682 4.4e-17 61.8 60.7 2 17 0.024 16 5.6 0.2 4 12 239 247 238 254 0.85 XPA protein N-terminal XPA_N PF01286.18 32 ZNF16-201 - 682 4.4e-17 61.8 60.7 3 17 0.062 43 4.3 0.1 3 11 266 274 264 276 0.88 XPA protein N-terminal XPA_N PF01286.18 32 ZNF16-201 - 682 4.4e-17 61.8 60.7 4 17 0.032 22 5.2 0.1 3 12 294 303 292 309 0.88 XPA protein N-terminal XPA_N PF01286.18 32 ZNF16-201 - 682 4.4e-17 61.8 60.7 5 17 0.01 6.9 6.8 0.1 3 14 322 333 320 336 0.89 XPA protein N-terminal XPA_N PF01286.18 32 ZNF16-201 - 682 4.4e-17 61.8 60.7 6 17 0.015 10 6.3 0.0 3 14 350 361 348 367 0.88 XPA protein N-terminal XPA_N PF01286.18 32 ZNF16-201 - 682 4.4e-17 61.8 60.7 7 17 0.0075 5.1 7.2 0.1 3 14 378 389 376 395 0.87 XPA protein N-terminal XPA_N PF01286.18 32 ZNF16-201 - 682 4.4e-17 61.8 60.7 8 17 0.029 20 5.3 0.0 3 12 406 415 404 426 0.85 XPA protein N-terminal XPA_N PF01286.18 32 ZNF16-201 - 682 4.4e-17 61.8 60.7 9 17 0.015 10 6.2 0.5 3 14 434 445 432 448 0.92 XPA protein N-terminal XPA_N PF01286.18 32 ZNF16-201 - 682 4.4e-17 61.8 60.7 10 17 0.23 1.6e+02 2.5 0.0 3 14 462 473 460 479 0.79 XPA protein N-terminal XPA_N PF01286.18 32 ZNF16-201 - 682 4.4e-17 61.8 60.7 11 17 0.27 1.9e+02 2.2 0.0 3 14 490 501 488 505 0.85 XPA protein N-terminal XPA_N PF01286.18 32 ZNF16-201 - 682 4.4e-17 61.8 60.7 12 17 0.013 8.7 6.5 0.1 4 14 519 529 516 530 0.90 XPA protein N-terminal XPA_N PF01286.18 32 ZNF16-201 - 682 4.4e-17 61.8 60.7 13 17 0.0034 2.3 8.3 0.2 3 14 546 557 544 561 0.92 XPA protein N-terminal XPA_N PF01286.18 32 ZNF16-201 - 682 4.4e-17 61.8 60.7 14 17 0.033 23 5.2 0.2 3 14 574 585 572 587 0.88 XPA protein N-terminal XPA_N PF01286.18 32 ZNF16-201 - 682 4.4e-17 61.8 60.7 15 17 0.0049 3.4 7.8 0.1 3 14 602 613 600 617 0.91 XPA protein N-terminal XPA_N PF01286.18 32 ZNF16-201 - 682 4.4e-17 61.8 60.7 16 17 0.014 9.9 6.3 0.1 3 12 630 639 628 647 0.83 XPA protein N-terminal XPA_N PF01286.18 32 ZNF16-201 - 682 4.4e-17 61.8 60.7 17 17 0.21 1.5e+02 2.6 0.0 3 16 658 672 656 675 0.74 XPA protein N-terminal zf_UBZ PF18439.1 32 ZNF16-201 - 682 1e-13 50.6 67.3 1 17 0.12 85 2.9 0.1 4 13 210 219 207 224 0.85 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF16-201 - 682 1e-13 50.6 67.3 2 17 0.0037 2.6 7.7 0.1 2 15 236 249 235 252 0.85 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF16-201 - 682 1e-13 50.6 67.3 3 17 0.0052 3.6 7.3 0.2 3 20 265 283 263 284 0.76 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF16-201 - 682 1e-13 50.6 67.3 4 17 0.022 15 5.2 0.1 3 20 293 311 291 312 0.82 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF16-201 - 682 1e-13 50.6 67.3 5 17 0.046 32 4.2 0.1 3 20 321 339 319 340 0.79 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF16-201 - 682 1e-13 50.6 67.3 6 17 0.0068 4.7 6.9 0.1 3 12 349 358 347 367 0.84 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF16-201 - 682 1e-13 50.6 67.3 7 17 0.024 16 5.2 0.2 3 16 377 391 375 396 0.79 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF16-201 - 682 1e-13 50.6 67.3 8 17 0.049 34 4.2 0.1 3 13 405 415 403 423 0.87 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF16-201 - 682 1e-13 50.6 67.3 9 17 0.0014 0.94 9.1 0.1 3 20 433 451 431 452 0.86 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF16-201 - 682 1e-13 50.6 67.3 10 17 2 1.4e+03 -1.0 0.0 3 13 461 471 460 476 0.82 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF16-201 - 682 1e-13 50.6 67.3 11 17 0.014 9.7 5.9 0.1 3 21 489 508 487 508 0.89 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF16-201 - 682 1e-13 50.6 67.3 12 17 0.084 58 3.4 0.1 3 12 517 526 515 531 0.88 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF16-201 - 682 1e-13 50.6 67.3 13 17 0.0015 1 9.0 0.3 3 21 545 564 543 564 0.87 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF16-201 - 682 1e-13 50.6 67.3 14 17 0.34 2.4e+02 1.4 0.3 4 15 574 585 572 592 0.77 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF16-201 - 682 1e-13 50.6 67.3 15 17 0.015 10 5.8 0.2 3 20 601 619 599 620 0.82 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF16-201 - 682 1e-13 50.6 67.3 16 17 0.0043 3 7.5 0.1 3 15 629 641 627 648 0.82 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF16-201 - 682 1e-13 50.6 67.3 17 17 0.042 29 4.4 0.1 3 16 657 671 655 676 0.78 Ubiquitin-Binding Zinc Finger zinc_ribbon_15 PF17032.5 86 ZNF16-201 - 682 5.1e-11 43.2 64.4 1 14 2.1 1.4e+03 0.1 0.1 66 76 209 219 188 224 0.70 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF16-201 - 682 5.1e-11 43.2 64.4 2 14 0.001 0.69 10.7 5.8 32 81 231 280 209 283 0.87 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF16-201 - 682 5.1e-11 43.2 64.4 3 14 0.00039 0.27 12.0 4.4 36 78 291 333 283 336 0.85 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF16-201 - 682 5.1e-11 43.2 64.4 4 14 0.0007 0.48 11.2 0.8 30 78 341 389 335 392 0.86 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF16-201 - 682 5.1e-11 43.2 64.4 5 14 0.0062 4.2 8.2 3.9 28 75 367 414 350 420 0.79 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF16-201 - 682 5.1e-11 43.2 64.4 6 14 0.0045 3.1 8.6 1.4 32 78 399 445 393 448 0.86 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF16-201 - 682 5.1e-11 43.2 64.4 7 14 0.00086 0.59 10.9 1.0 28 76 423 471 418 475 0.86 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF16-201 - 682 5.1e-11 43.2 64.4 8 14 0.015 10 7.0 0.4 30 78 453 501 447 504 0.81 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF16-201 - 682 5.1e-11 43.2 64.4 9 14 0.003 2.1 9.2 0.4 35 75 486 526 475 532 0.83 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF16-201 - 682 5.1e-11 43.2 64.4 10 14 0.002 1.4 9.7 0.7 33 78 512 557 503 560 0.84 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF16-201 - 682 5.1e-11 43.2 64.4 11 14 0.00065 0.45 11.3 1.4 31 78 538 585 532 589 0.85 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF16-201 - 682 5.1e-11 43.2 64.4 12 14 0.071 49 4.8 5.4 49 78 556 585 547 618 0.50 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF16-201 - 682 5.1e-11 43.2 64.4 13 14 0.015 10 7.0 1.3 30 77 593 640 586 642 0.83 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF16-201 - 682 5.1e-11 43.2 64.4 14 14 0.003 2.1 9.2 0.7 34 78 625 669 615 673 0.84 zinc-ribbon family zf-LYAR PF08790.11 28 ZNF16-201 - 682 6.6e-08 32.3 74.2 1 17 0.053 37 4.3 0.1 2 13 210 221 209 223 0.86 LYAR-type C2HC zinc finger zf-LYAR PF08790.11 28 ZNF16-201 - 682 6.6e-08 32.3 74.2 2 17 0.00042 0.29 11.1 0.2 1 24 237 262 237 264 0.74 LYAR-type C2HC zinc finger zf-LYAR PF08790.11 28 ZNF16-201 - 682 6.6e-08 32.3 74.2 3 17 0.025 17 5.4 1.0 1 20 265 285 265 285 0.90 LYAR-type C2HC zinc finger zf-LYAR PF08790.11 28 ZNF16-201 - 682 6.6e-08 32.3 74.2 4 17 0.011 7.9 6.5 0.4 1 20 293 313 293 318 0.89 LYAR-type C2HC zinc finger zf-LYAR PF08790.11 28 ZNF16-201 - 682 6.6e-08 32.3 74.2 5 17 0.26 1.8e+02 2.2 0.0 2 18 322 339 321 341 0.77 LYAR-type C2HC zinc finger zf-LYAR PF08790.11 28 ZNF16-201 - 682 6.6e-08 32.3 74.2 6 17 0.16 1.1e+02 2.9 0.1 1 13 349 362 349 369 0.76 LYAR-type C2HC zinc finger zf-LYAR PF08790.11 28 ZNF16-201 - 682 6.6e-08 32.3 74.2 7 17 0.15 1.1e+02 2.9 0.1 1 18 377 395 377 397 0.80 LYAR-type C2HC zinc finger zf-LYAR PF08790.11 28 ZNF16-201 - 682 6.6e-08 32.3 74.2 8 17 0.026 18 5.3 0.1 1 15 405 420 405 425 0.75 LYAR-type C2HC zinc finger zf-LYAR PF08790.11 28 ZNF16-201 - 682 6.6e-08 32.3 74.2 9 17 0.0041 2.9 7.9 0.2 1 18 433 451 433 453 0.80 LYAR-type C2HC zinc finger zf-LYAR PF08790.11 28 ZNF16-201 - 682 6.6e-08 32.3 74.2 10 17 2.2 1.5e+03 -0.8 0.1 6 15 466 475 462 480 0.75 LYAR-type C2HC zinc finger zf-LYAR PF08790.11 28 ZNF16-201 - 682 6.6e-08 32.3 74.2 11 17 2.6 1.8e+03 -1.0 0.1 3 13 491 501 489 508 0.72 LYAR-type C2HC zinc finger zf-LYAR PF08790.11 28 ZNF16-201 - 682 6.6e-08 32.3 74.2 12 17 0.12 84 3.2 0.0 1 12 517 528 517 536 0.82 LYAR-type C2HC zinc finger zf-LYAR PF08790.11 28 ZNF16-201 - 682 6.6e-08 32.3 74.2 13 17 0.0036 2.5 8.1 0.4 1 18 545 563 545 565 0.82 LYAR-type C2HC zinc finger zf-LYAR PF08790.11 28 ZNF16-201 - 682 6.6e-08 32.3 74.2 14 17 0.14 98 3.0 0.3 3 17 575 589 574 593 0.73 LYAR-type C2HC zinc finger zf-LYAR PF08790.11 28 ZNF16-201 - 682 6.6e-08 32.3 74.2 15 17 0.0011 0.75 9.7 0.3 1 14 601 614 601 620 0.83 LYAR-type C2HC zinc finger zf-LYAR PF08790.11 28 ZNF16-201 - 682 6.6e-08 32.3 74.2 16 17 0.14 96 3.0 0.1 1 15 629 643 629 648 0.83 LYAR-type C2HC zinc finger zf-LYAR PF08790.11 28 ZNF16-201 - 682 6.6e-08 32.3 74.2 17 17 0.28 1.9e+02 2.0 0.1 1 13 657 670 657 676 0.76 LYAR-type C2HC zinc finger # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF16-201.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF16-201.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF16-201.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF16-201.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF16-201.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:00:35 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZNF16-202 - 682 8.5e-123 395.8 102.4 1 17 0.16 1.1e+02 3.5 0.0 10 24 204 218 195 218 0.79 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF16-202 - 682 8.5e-123 395.8 102.4 2 17 4.5e-05 0.031 14.7 0.0 8 25 230 247 228 248 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF16-202 - 682 8.5e-123 395.8 102.4 3 17 3.4e-06 0.0024 18.2 0.5 7 24 257 274 255 275 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF16-202 - 682 8.5e-123 395.8 102.4 4 17 1.2e-07 8.1e-05 22.9 1.1 2 25 280 303 279 304 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF16-202 - 682 8.5e-123 395.8 102.4 5 17 5.3e-10 3.6e-07 30.3 2.0 1 25 307 331 307 332 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF16-202 - 682 8.5e-123 395.8 102.4 6 17 2.9e-10 2e-07 31.1 0.1 1 25 335 359 335 360 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF16-202 - 682 8.5e-123 395.8 102.4 7 17 1.7e-10 1.1e-07 31.9 1.0 1 25 363 387 363 388 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF16-202 - 682 8.5e-123 395.8 102.4 8 17 2e-10 1.3e-07 31.7 2.4 1 24 391 414 391 416 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF16-202 - 682 8.5e-123 395.8 102.4 9 17 3.2e-11 2.2e-08 34.1 1.3 1 25 419 443 419 444 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF16-202 - 682 8.5e-123 395.8 102.4 10 17 4.3e-10 2.9e-07 30.6 0.4 2 25 448 471 447 472 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF16-202 - 682 8.5e-123 395.8 102.4 11 17 1.3e-11 9e-09 35.4 0.6 2 26 476 500 475 500 0.97 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF16-202 - 682 8.5e-123 395.8 102.4 12 17 1.9e-09 1.3e-06 28.5 0.2 1 25 503 527 503 528 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF16-202 - 682 8.5e-123 395.8 102.4 13 17 1.1e-11 7.6e-09 35.6 0.2 1 25 531 555 531 556 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF16-202 - 682 8.5e-123 395.8 102.4 14 17 2.3e-08 1.6e-05 25.1 0.2 3 25 561 583 560 584 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF16-202 - 682 8.5e-123 395.8 102.4 15 17 8.6e-10 6e-07 29.6 0.7 1 25 587 611 587 612 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF16-202 - 682 8.5e-123 395.8 102.4 16 17 1.8e-10 1.3e-07 31.8 0.2 1 25 615 639 615 640 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF16-202 - 682 8.5e-123 395.8 102.4 17 17 6.3e-09 4.3e-06 26.9 0.0 3 25 645 667 644 668 0.92 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZNF16-202 - 682 2.8e-98 317.3 125.2 1 17 0.023 16 6.2 0.0 3 13 211 221 209 226 0.78 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF16-202 - 682 2.8e-98 317.3 125.2 2 17 9.2e-05 0.063 13.8 0.3 1 17 237 253 237 254 0.89 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF16-202 - 682 2.8e-98 317.3 125.2 3 17 8.2e-06 0.0057 17.1 4.3 1 23 265 287 265 287 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF16-202 - 682 2.8e-98 317.3 125.2 4 17 4.5e-09 3.1e-06 27.3 1.3 1 23 293 315 293 315 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF16-202 - 682 2.8e-98 317.3 125.2 5 17 6.4e-10 4.4e-07 30.0 0.4 1 23 321 343 321 343 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF16-202 - 682 2.8e-98 317.3 125.2 6 17 1.1e-09 7.3e-07 29.3 2.4 1 23 349 371 349 371 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF16-202 - 682 2.8e-98 317.3 125.2 7 17 2.7e-09 1.9e-06 28.0 0.8 1 23 377 399 377 399 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF16-202 - 682 2.8e-98 317.3 125.2 8 17 1.7e-09 1.2e-06 28.7 1.2 1 23 405 427 405 427 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF16-202 - 682 2.8e-98 317.3 125.2 9 17 2.3e-09 1.6e-06 28.2 0.7 1 23 433 455 433 455 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF16-202 - 682 2.8e-98 317.3 125.2 10 17 4.9e-07 0.00034 20.9 0.7 1 23 461 483 461 483 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF16-202 - 682 2.8e-98 317.3 125.2 11 17 1.5e-07 0.0001 22.6 0.4 1 23 489 511 489 511 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF16-202 - 682 2.8e-98 317.3 125.2 12 17 6.1e-09 4.2e-06 26.9 0.9 1 23 517 539 517 539 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF16-202 - 682 2.8e-98 317.3 125.2 13 17 4.2e-09 2.9e-06 27.4 0.5 1 23 545 567 545 567 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF16-202 - 682 2.8e-98 317.3 125.2 14 17 3.2e-08 2.2e-05 24.6 2.9 1 23 573 595 573 595 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF16-202 - 682 2.8e-98 317.3 125.2 15 17 3.9e-08 2.7e-05 24.4 0.4 1 23 601 623 601 623 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF16-202 - 682 2.8e-98 317.3 125.2 16 17 4.4e-08 3.1e-05 24.2 0.4 1 23 629 651 629 651 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF16-202 - 682 2.8e-98 317.3 125.2 17 17 1.3e-06 0.00086 19.6 0.1 1 23 657 679 657 679 0.96 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZNF16-202 - 682 5.3e-52 170.0 116.4 1 17 0.052 36 5.6 0.0 2 17 210 225 209 231 0.79 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF16-202 - 682 5.3e-52 170.0 116.4 2 17 0.00044 0.3 12.0 0.6 1 23 237 259 237 260 0.75 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF16-202 - 682 5.3e-52 170.0 116.4 3 17 0.00019 0.13 13.1 4.2 1 23 265 287 265 288 0.90 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF16-202 - 682 5.3e-52 170.0 116.4 4 17 4.3e-06 0.003 18.3 1.1 1 23 293 315 293 316 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF16-202 - 682 5.3e-52 170.0 116.4 5 17 2.2e-05 0.015 16.1 0.3 1 23 321 343 321 344 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF16-202 - 682 5.3e-52 170.0 116.4 6 17 2e-05 0.013 16.2 1.8 1 23 349 371 349 372 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF16-202 - 682 5.3e-52 170.0 116.4 7 17 1.5e-05 0.01 16.6 1.1 1 23 377 399 377 400 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF16-202 - 682 5.3e-52 170.0 116.4 8 17 2e-05 0.014 16.2 0.9 1 23 405 427 405 428 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF16-202 - 682 5.3e-52 170.0 116.4 9 17 6.5e-06 0.0045 17.7 0.6 1 23 433 455 433 456 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF16-202 - 682 5.3e-52 170.0 116.4 10 17 0.00016 0.11 13.4 0.8 1 23 461 483 461 484 0.84 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF16-202 - 682 5.3e-52 170.0 116.4 11 17 0.00012 0.083 13.8 0.6 1 23 489 511 489 512 0.90 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF16-202 - 682 5.3e-52 170.0 116.4 12 17 0.00024 0.16 12.8 0.7 1 23 517 539 517 540 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF16-202 - 682 5.3e-52 170.0 116.4 13 17 2.7e-06 0.0019 18.9 0.4 1 23 545 567 545 568 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF16-202 - 682 5.3e-52 170.0 116.4 14 17 4.1e-05 0.028 15.2 2.2 1 23 573 595 573 596 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF16-202 - 682 5.3e-52 170.0 116.4 15 17 0.00011 0.075 13.9 0.5 1 23 601 623 601 624 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF16-202 - 682 5.3e-52 170.0 116.4 16 17 4.1e-05 0.028 15.2 0.5 1 23 629 651 629 652 0.90 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF16-202 - 682 5.3e-52 170.0 116.4 17 17 0.0019 1.3 10.1 0.2 3 23 659 679 657 680 0.91 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF16-202 - 682 5.4e-28 96.4 113.8 1 17 0.0058 4 7.6 0.4 3 12 210 219 210 219 0.92 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF16-202 - 682 5.4e-28 96.4 113.8 2 17 0.071 49 4.1 0.3 2 12 237 247 236 248 0.88 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF16-202 - 682 5.4e-28 96.4 113.8 3 17 0.0016 1.1 9.3 0.3 1 12 264 275 264 275 0.91 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF16-202 - 682 5.4e-28 96.4 113.8 4 17 8.4e-05 0.058 13.4 3.1 2 27 293 318 293 318 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF16-202 - 682 5.4e-28 96.4 113.8 5 17 3.6e-05 0.025 14.6 0.4 2 24 321 343 321 346 0.90 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF16-202 - 682 5.4e-28 96.4 113.8 6 17 3.7e-06 0.0026 17.7 1.6 2 24 349 371 349 374 0.95 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF16-202 - 682 5.4e-28 96.4 113.8 7 17 0.017 12 6.0 1.6 2 22 377 397 377 401 0.82 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF16-202 - 682 5.4e-28 96.4 113.8 8 17 0.0012 0.85 9.7 0.4 2 24 405 427 405 430 0.92 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF16-202 - 682 5.4e-28 96.4 113.8 9 17 0.00085 0.58 10.2 0.7 2 24 433 455 433 458 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF16-202 - 682 5.4e-28 96.4 113.8 10 17 3.6e-05 0.025 14.6 0.6 2 21 461 480 461 485 0.91 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF16-202 - 682 5.4e-28 96.4 113.8 11 17 0.00044 0.3 11.1 0.7 2 20 489 507 489 508 0.87 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF16-202 - 682 5.4e-28 96.4 113.8 12 17 0.00047 0.32 11.0 0.7 2 24 517 539 517 542 0.84 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF16-202 - 682 5.4e-28 96.4 113.8 13 17 0.0002 0.14 12.2 0.4 2 12 545 555 545 567 0.88 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF16-202 - 682 5.4e-28 96.4 113.8 14 17 0.00018 0.12 12.4 2.5 2 24 573 595 573 598 0.92 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF16-202 - 682 5.4e-28 96.4 113.8 15 17 0.18 1.3e+02 2.8 0.2 2 12 601 611 601 621 0.89 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF16-202 - 682 5.4e-28 96.4 113.8 16 17 0.00054 0.37 10.8 0.5 2 20 629 647 629 652 0.79 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF16-202 - 682 5.4e-28 96.4 113.8 17 17 0.75 5.2e+02 0.8 0.2 2 12 657 667 657 675 0.83 C2H2-type zinc finger zf-C2H2_jaz PF12171.8 27 ZNF16-202 - 682 3.1e-20 71.9 66.1 1 17 0.37 2.5e+02 2.1 0.0 2 12 209 219 208 221 0.85 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF16-202 - 682 3.1e-20 71.9 66.1 2 17 0.032 22 5.5 0.2 2 19 237 254 236 254 0.89 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF16-202 - 682 3.1e-20 71.9 66.1 3 17 0.022 15 6.0 0.3 4 21 267 284 265 285 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF16-202 - 682 3.1e-20 71.9 66.1 4 17 0.00056 0.38 11.1 2.2 2 24 293 315 292 315 0.95 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF16-202 - 682 3.1e-20 71.9 66.1 5 17 0.0033 2.3 8.6 0.1 2 22 321 341 320 341 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF16-202 - 682 3.1e-20 71.9 66.1 6 17 0.029 20 5.6 0.2 2 20 349 367 348 371 0.89 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF16-202 - 682 3.1e-20 71.9 66.1 7 17 0.019 13 6.2 0.1 2 22 377 397 376 397 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF16-202 - 682 3.1e-20 71.9 66.1 8 17 0.22 1.5e+02 2.8 0.0 2 20 405 423 404 423 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF16-202 - 682 3.1e-20 71.9 66.1 9 17 0.044 30 5.0 0.0 2 21 433 452 432 453 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF16-202 - 682 3.1e-20 71.9 66.1 10 17 0.061 42 4.6 0.1 2 21 461 480 460 481 0.91 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF16-202 - 682 3.1e-20 71.9 66.1 11 17 0.0013 0.89 9.9 0.1 2 21 489 508 488 508 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF16-202 - 682 3.1e-20 71.9 66.1 12 17 0.0075 5.1 7.5 0.0 2 22 517 537 516 537 0.90 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF16-202 - 682 3.1e-20 71.9 66.1 13 17 0.00027 0.19 12.1 0.1 2 22 545 565 544 565 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF16-202 - 682 3.1e-20 71.9 66.1 14 17 0.14 95 3.5 0.8 2 22 573 593 572 593 0.88 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF16-202 - 682 3.1e-20 71.9 66.1 15 17 0.0036 2.5 8.5 0.1 2 21 601 620 600 621 0.91 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF16-202 - 682 3.1e-20 71.9 66.1 16 17 0.012 8.5 6.8 0.1 2 22 629 649 628 649 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF16-202 - 682 3.1e-20 71.9 66.1 17 17 0.24 1.6e+02 2.7 0.1 2 20 657 675 656 677 0.84 Zinc-finger double-stranded RNA-binding Zn-ribbon_8 PF09723.10 40 ZNF16-202 - 682 1e-19 70.4 82.6 1 13 0.017 11 6.2 2.7 8 35 211 245 208 248 0.78 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF16-202 - 682 1e-19 70.4 82.6 2 13 0.00043 0.3 11.2 2.9 6 36 237 274 236 276 0.74 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF16-202 - 682 1e-19 70.4 82.6 3 13 0.00038 0.26 11.4 4.6 6 35 265 301 260 305 0.85 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF16-202 - 682 1e-19 70.4 82.6 4 13 2.6e-05 0.018 15.2 4.0 6 38 293 332 292 333 0.88 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF16-202 - 682 1e-19 70.4 82.6 5 13 3.3e-06 0.0023 18.0 2.4 6 38 321 360 319 362 0.93 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF16-202 - 682 1e-19 70.4 82.6 6 13 3.8e-05 0.026 14.6 3.2 6 39 377 417 376 418 0.93 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF16-202 - 682 1e-19 70.4 82.6 7 13 3.1e-05 0.022 14.9 1.1 6 34 433 468 432 471 0.86 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF16-202 - 682 1e-19 70.4 82.6 8 13 5.6e-05 0.039 14.1 1.0 6 35 489 525 488 529 0.88 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF16-202 - 682 1e-19 70.4 82.6 9 13 7.3e-06 0.005 16.9 2.1 6 38 545 584 544 586 0.89 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF16-202 - 682 1e-19 70.4 82.6 10 13 0.0011 0.78 9.9 3.1 7 34 574 608 573 613 0.90 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF16-202 - 682 1e-19 70.4 82.6 11 13 0.0021 1.5 9.0 3.3 6 35 601 637 600 641 0.81 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF16-202 - 682 1e-19 70.4 82.6 12 13 4e-05 0.027 14.6 1.4 6 36 629 666 628 670 0.89 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF16-202 - 682 1e-19 70.4 82.6 13 13 0.021 14 5.8 0.1 6 20 657 671 656 677 0.83 Zinc ribbon domain XPA_N PF01286.18 32 ZNF16-202 - 682 4.4e-17 61.8 60.7 1 17 0.021 15 5.7 0.2 3 12 210 219 208 220 0.87 XPA protein N-terminal XPA_N PF01286.18 32 ZNF16-202 - 682 4.4e-17 61.8 60.7 2 17 0.024 16 5.6 0.2 4 12 239 247 238 254 0.85 XPA protein N-terminal XPA_N PF01286.18 32 ZNF16-202 - 682 4.4e-17 61.8 60.7 3 17 0.062 43 4.3 0.1 3 11 266 274 264 276 0.88 XPA protein N-terminal XPA_N PF01286.18 32 ZNF16-202 - 682 4.4e-17 61.8 60.7 4 17 0.032 22 5.2 0.1 3 12 294 303 292 309 0.88 XPA protein N-terminal XPA_N PF01286.18 32 ZNF16-202 - 682 4.4e-17 61.8 60.7 5 17 0.01 6.9 6.8 0.1 3 14 322 333 320 336 0.89 XPA protein N-terminal XPA_N PF01286.18 32 ZNF16-202 - 682 4.4e-17 61.8 60.7 6 17 0.015 10 6.3 0.0 3 14 350 361 348 367 0.88 XPA protein N-terminal XPA_N PF01286.18 32 ZNF16-202 - 682 4.4e-17 61.8 60.7 7 17 0.0075 5.1 7.2 0.1 3 14 378 389 376 395 0.87 XPA protein N-terminal XPA_N PF01286.18 32 ZNF16-202 - 682 4.4e-17 61.8 60.7 8 17 0.029 20 5.3 0.0 3 12 406 415 404 426 0.85 XPA protein N-terminal XPA_N PF01286.18 32 ZNF16-202 - 682 4.4e-17 61.8 60.7 9 17 0.015 10 6.2 0.5 3 14 434 445 432 448 0.92 XPA protein N-terminal XPA_N PF01286.18 32 ZNF16-202 - 682 4.4e-17 61.8 60.7 10 17 0.23 1.6e+02 2.5 0.0 3 14 462 473 460 479 0.79 XPA protein N-terminal XPA_N PF01286.18 32 ZNF16-202 - 682 4.4e-17 61.8 60.7 11 17 0.27 1.9e+02 2.2 0.0 3 14 490 501 488 505 0.85 XPA protein N-terminal XPA_N PF01286.18 32 ZNF16-202 - 682 4.4e-17 61.8 60.7 12 17 0.013 8.7 6.5 0.1 4 14 519 529 516 530 0.90 XPA protein N-terminal XPA_N PF01286.18 32 ZNF16-202 - 682 4.4e-17 61.8 60.7 13 17 0.0034 2.3 8.3 0.2 3 14 546 557 544 561 0.92 XPA protein N-terminal XPA_N PF01286.18 32 ZNF16-202 - 682 4.4e-17 61.8 60.7 14 17 0.033 23 5.2 0.2 3 14 574 585 572 587 0.88 XPA protein N-terminal XPA_N PF01286.18 32 ZNF16-202 - 682 4.4e-17 61.8 60.7 15 17 0.0049 3.4 7.8 0.1 3 14 602 613 600 617 0.91 XPA protein N-terminal XPA_N PF01286.18 32 ZNF16-202 - 682 4.4e-17 61.8 60.7 16 17 0.014 9.9 6.3 0.1 3 12 630 639 628 647 0.83 XPA protein N-terminal XPA_N PF01286.18 32 ZNF16-202 - 682 4.4e-17 61.8 60.7 17 17 0.21 1.5e+02 2.6 0.0 3 16 658 672 656 675 0.74 XPA protein N-terminal zf_UBZ PF18439.1 32 ZNF16-202 - 682 1e-13 50.6 67.3 1 17 0.12 85 2.9 0.1 4 13 210 219 207 224 0.85 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF16-202 - 682 1e-13 50.6 67.3 2 17 0.0037 2.6 7.7 0.1 2 15 236 249 235 252 0.85 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF16-202 - 682 1e-13 50.6 67.3 3 17 0.0052 3.6 7.3 0.2 3 20 265 283 263 284 0.76 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF16-202 - 682 1e-13 50.6 67.3 4 17 0.022 15 5.2 0.1 3 20 293 311 291 312 0.82 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF16-202 - 682 1e-13 50.6 67.3 5 17 0.046 32 4.2 0.1 3 20 321 339 319 340 0.79 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF16-202 - 682 1e-13 50.6 67.3 6 17 0.0068 4.7 6.9 0.1 3 12 349 358 347 367 0.84 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF16-202 - 682 1e-13 50.6 67.3 7 17 0.024 16 5.2 0.2 3 16 377 391 375 396 0.79 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF16-202 - 682 1e-13 50.6 67.3 8 17 0.049 34 4.2 0.1 3 13 405 415 403 423 0.87 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF16-202 - 682 1e-13 50.6 67.3 9 17 0.0014 0.94 9.1 0.1 3 20 433 451 431 452 0.86 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF16-202 - 682 1e-13 50.6 67.3 10 17 2 1.4e+03 -1.0 0.0 3 13 461 471 460 476 0.82 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF16-202 - 682 1e-13 50.6 67.3 11 17 0.014 9.7 5.9 0.1 3 21 489 508 487 508 0.89 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF16-202 - 682 1e-13 50.6 67.3 12 17 0.084 58 3.4 0.1 3 12 517 526 515 531 0.88 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF16-202 - 682 1e-13 50.6 67.3 13 17 0.0015 1 9.0 0.3 3 21 545 564 543 564 0.87 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF16-202 - 682 1e-13 50.6 67.3 14 17 0.34 2.4e+02 1.4 0.3 4 15 574 585 572 592 0.77 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF16-202 - 682 1e-13 50.6 67.3 15 17 0.015 10 5.8 0.2 3 20 601 619 599 620 0.82 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF16-202 - 682 1e-13 50.6 67.3 16 17 0.0043 3 7.5 0.1 3 15 629 641 627 648 0.82 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF16-202 - 682 1e-13 50.6 67.3 17 17 0.042 29 4.4 0.1 3 16 657 671 655 676 0.78 Ubiquitin-Binding Zinc Finger zinc_ribbon_15 PF17032.5 86 ZNF16-202 - 682 5.1e-11 43.2 64.4 1 14 2.1 1.4e+03 0.1 0.1 66 76 209 219 188 224 0.70 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF16-202 - 682 5.1e-11 43.2 64.4 2 14 0.001 0.69 10.7 5.8 32 81 231 280 209 283 0.87 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF16-202 - 682 5.1e-11 43.2 64.4 3 14 0.00039 0.27 12.0 4.4 36 78 291 333 283 336 0.85 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF16-202 - 682 5.1e-11 43.2 64.4 4 14 0.0007 0.48 11.2 0.8 30 78 341 389 335 392 0.86 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF16-202 - 682 5.1e-11 43.2 64.4 5 14 0.0062 4.2 8.2 3.9 28 75 367 414 350 420 0.79 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF16-202 - 682 5.1e-11 43.2 64.4 6 14 0.0045 3.1 8.6 1.4 32 78 399 445 393 448 0.86 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF16-202 - 682 5.1e-11 43.2 64.4 7 14 0.00086 0.59 10.9 1.0 28 76 423 471 418 475 0.86 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF16-202 - 682 5.1e-11 43.2 64.4 8 14 0.015 10 7.0 0.4 30 78 453 501 447 504 0.81 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF16-202 - 682 5.1e-11 43.2 64.4 9 14 0.003 2.1 9.2 0.4 35 75 486 526 475 532 0.83 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF16-202 - 682 5.1e-11 43.2 64.4 10 14 0.002 1.4 9.7 0.7 33 78 512 557 503 560 0.84 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF16-202 - 682 5.1e-11 43.2 64.4 11 14 0.00065 0.45 11.3 1.4 31 78 538 585 532 589 0.85 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF16-202 - 682 5.1e-11 43.2 64.4 12 14 0.071 49 4.8 5.4 49 78 556 585 547 618 0.50 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF16-202 - 682 5.1e-11 43.2 64.4 13 14 0.015 10 7.0 1.3 30 77 593 640 586 642 0.83 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF16-202 - 682 5.1e-11 43.2 64.4 14 14 0.003 2.1 9.2 0.7 34 78 625 669 615 673 0.84 zinc-ribbon family zf-LYAR PF08790.11 28 ZNF16-202 - 682 6.6e-08 32.3 74.2 1 17 0.053 37 4.3 0.1 2 13 210 221 209 223 0.86 LYAR-type C2HC zinc finger zf-LYAR PF08790.11 28 ZNF16-202 - 682 6.6e-08 32.3 74.2 2 17 0.00042 0.29 11.1 0.2 1 24 237 262 237 264 0.74 LYAR-type C2HC zinc finger zf-LYAR PF08790.11 28 ZNF16-202 - 682 6.6e-08 32.3 74.2 3 17 0.025 17 5.4 1.0 1 20 265 285 265 285 0.90 LYAR-type C2HC zinc finger zf-LYAR PF08790.11 28 ZNF16-202 - 682 6.6e-08 32.3 74.2 4 17 0.011 7.9 6.5 0.4 1 20 293 313 293 318 0.89 LYAR-type C2HC zinc finger zf-LYAR PF08790.11 28 ZNF16-202 - 682 6.6e-08 32.3 74.2 5 17 0.26 1.8e+02 2.2 0.0 2 18 322 339 321 341 0.77 LYAR-type C2HC zinc finger zf-LYAR PF08790.11 28 ZNF16-202 - 682 6.6e-08 32.3 74.2 6 17 0.16 1.1e+02 2.9 0.1 1 13 349 362 349 369 0.76 LYAR-type C2HC zinc finger zf-LYAR PF08790.11 28 ZNF16-202 - 682 6.6e-08 32.3 74.2 7 17 0.15 1.1e+02 2.9 0.1 1 18 377 395 377 397 0.80 LYAR-type C2HC zinc finger zf-LYAR PF08790.11 28 ZNF16-202 - 682 6.6e-08 32.3 74.2 8 17 0.026 18 5.3 0.1 1 15 405 420 405 425 0.75 LYAR-type C2HC zinc finger zf-LYAR PF08790.11 28 ZNF16-202 - 682 6.6e-08 32.3 74.2 9 17 0.0041 2.9 7.9 0.2 1 18 433 451 433 453 0.80 LYAR-type C2HC zinc finger zf-LYAR PF08790.11 28 ZNF16-202 - 682 6.6e-08 32.3 74.2 10 17 2.2 1.5e+03 -0.8 0.1 6 15 466 475 462 480 0.75 LYAR-type C2HC zinc finger zf-LYAR PF08790.11 28 ZNF16-202 - 682 6.6e-08 32.3 74.2 11 17 2.6 1.8e+03 -1.0 0.1 3 13 491 501 489 508 0.72 LYAR-type C2HC zinc finger zf-LYAR PF08790.11 28 ZNF16-202 - 682 6.6e-08 32.3 74.2 12 17 0.12 84 3.2 0.0 1 12 517 528 517 536 0.82 LYAR-type C2HC zinc finger zf-LYAR PF08790.11 28 ZNF16-202 - 682 6.6e-08 32.3 74.2 13 17 0.0036 2.5 8.1 0.4 1 18 545 563 545 565 0.82 LYAR-type C2HC zinc finger zf-LYAR PF08790.11 28 ZNF16-202 - 682 6.6e-08 32.3 74.2 14 17 0.14 98 3.0 0.3 3 17 575 589 574 593 0.73 LYAR-type C2HC zinc finger zf-LYAR PF08790.11 28 ZNF16-202 - 682 6.6e-08 32.3 74.2 15 17 0.0011 0.75 9.7 0.3 1 14 601 614 601 620 0.83 LYAR-type C2HC zinc finger zf-LYAR PF08790.11 28 ZNF16-202 - 682 6.6e-08 32.3 74.2 16 17 0.14 96 3.0 0.1 1 15 629 643 629 648 0.83 LYAR-type C2HC zinc finger zf-LYAR PF08790.11 28 ZNF16-202 - 682 6.6e-08 32.3 74.2 17 17 0.28 1.9e+02 2.0 0.1 1 13 657 670 657 676 0.76 LYAR-type C2HC zinc finger # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF16-202.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF16-202.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF16-202.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF16-202.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF16-202.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:00:36 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF16-203.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF16-203.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF16-203.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF16-203.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF16-203.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:00:36 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF16-204.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF16-204.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF16-204.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF16-204.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF16-204.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:00:37 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF16-205.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF16-205.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF16-205.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF16-205.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF16-205.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:00:37 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF16-206.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF16-206.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF16-206.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF16-206.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF16-206.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:00:37 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF16-207.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF16-207.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF16-207.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF16-207.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF16-207.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:00:38 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF16-208.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF16-208.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF16-208.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF16-208.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF16-208.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:00:38 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZNF16-209 - 682 8.5e-123 395.8 102.4 1 17 0.16 1.1e+02 3.5 0.0 10 24 204 218 195 218 0.79 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF16-209 - 682 8.5e-123 395.8 102.4 2 17 4.5e-05 0.031 14.7 0.0 8 25 230 247 228 248 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF16-209 - 682 8.5e-123 395.8 102.4 3 17 3.4e-06 0.0024 18.2 0.5 7 24 257 274 255 275 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF16-209 - 682 8.5e-123 395.8 102.4 4 17 1.2e-07 8.1e-05 22.9 1.1 2 25 280 303 279 304 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF16-209 - 682 8.5e-123 395.8 102.4 5 17 5.3e-10 3.6e-07 30.3 2.0 1 25 307 331 307 332 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF16-209 - 682 8.5e-123 395.8 102.4 6 17 2.9e-10 2e-07 31.1 0.1 1 25 335 359 335 360 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF16-209 - 682 8.5e-123 395.8 102.4 7 17 1.7e-10 1.1e-07 31.9 1.0 1 25 363 387 363 388 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF16-209 - 682 8.5e-123 395.8 102.4 8 17 2e-10 1.3e-07 31.7 2.4 1 24 391 414 391 416 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF16-209 - 682 8.5e-123 395.8 102.4 9 17 3.2e-11 2.2e-08 34.1 1.3 1 25 419 443 419 444 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF16-209 - 682 8.5e-123 395.8 102.4 10 17 4.3e-10 2.9e-07 30.6 0.4 2 25 448 471 447 472 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF16-209 - 682 8.5e-123 395.8 102.4 11 17 1.3e-11 9e-09 35.4 0.6 2 26 476 500 475 500 0.97 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF16-209 - 682 8.5e-123 395.8 102.4 12 17 1.9e-09 1.3e-06 28.5 0.2 1 25 503 527 503 528 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF16-209 - 682 8.5e-123 395.8 102.4 13 17 1.1e-11 7.6e-09 35.6 0.2 1 25 531 555 531 556 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF16-209 - 682 8.5e-123 395.8 102.4 14 17 2.3e-08 1.6e-05 25.1 0.2 3 25 561 583 560 584 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF16-209 - 682 8.5e-123 395.8 102.4 15 17 8.6e-10 6e-07 29.6 0.7 1 25 587 611 587 612 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF16-209 - 682 8.5e-123 395.8 102.4 16 17 1.8e-10 1.3e-07 31.8 0.2 1 25 615 639 615 640 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF16-209 - 682 8.5e-123 395.8 102.4 17 17 6.3e-09 4.3e-06 26.9 0.0 3 25 645 667 644 668 0.92 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZNF16-209 - 682 2.8e-98 317.3 125.2 1 17 0.023 16 6.2 0.0 3 13 211 221 209 226 0.78 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF16-209 - 682 2.8e-98 317.3 125.2 2 17 9.2e-05 0.063 13.8 0.3 1 17 237 253 237 254 0.89 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF16-209 - 682 2.8e-98 317.3 125.2 3 17 8.2e-06 0.0057 17.1 4.3 1 23 265 287 265 287 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF16-209 - 682 2.8e-98 317.3 125.2 4 17 4.5e-09 3.1e-06 27.3 1.3 1 23 293 315 293 315 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF16-209 - 682 2.8e-98 317.3 125.2 5 17 6.4e-10 4.4e-07 30.0 0.4 1 23 321 343 321 343 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF16-209 - 682 2.8e-98 317.3 125.2 6 17 1.1e-09 7.3e-07 29.3 2.4 1 23 349 371 349 371 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF16-209 - 682 2.8e-98 317.3 125.2 7 17 2.7e-09 1.9e-06 28.0 0.8 1 23 377 399 377 399 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF16-209 - 682 2.8e-98 317.3 125.2 8 17 1.7e-09 1.2e-06 28.7 1.2 1 23 405 427 405 427 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF16-209 - 682 2.8e-98 317.3 125.2 9 17 2.3e-09 1.6e-06 28.2 0.7 1 23 433 455 433 455 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF16-209 - 682 2.8e-98 317.3 125.2 10 17 4.9e-07 0.00034 20.9 0.7 1 23 461 483 461 483 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF16-209 - 682 2.8e-98 317.3 125.2 11 17 1.5e-07 0.0001 22.6 0.4 1 23 489 511 489 511 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF16-209 - 682 2.8e-98 317.3 125.2 12 17 6.1e-09 4.2e-06 26.9 0.9 1 23 517 539 517 539 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF16-209 - 682 2.8e-98 317.3 125.2 13 17 4.2e-09 2.9e-06 27.4 0.5 1 23 545 567 545 567 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF16-209 - 682 2.8e-98 317.3 125.2 14 17 3.2e-08 2.2e-05 24.6 2.9 1 23 573 595 573 595 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF16-209 - 682 2.8e-98 317.3 125.2 15 17 3.9e-08 2.7e-05 24.4 0.4 1 23 601 623 601 623 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF16-209 - 682 2.8e-98 317.3 125.2 16 17 4.4e-08 3.1e-05 24.2 0.4 1 23 629 651 629 651 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF16-209 - 682 2.8e-98 317.3 125.2 17 17 1.3e-06 0.00086 19.6 0.1 1 23 657 679 657 679 0.96 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZNF16-209 - 682 5.3e-52 170.0 116.4 1 17 0.052 36 5.6 0.0 2 17 210 225 209 231 0.79 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF16-209 - 682 5.3e-52 170.0 116.4 2 17 0.00044 0.3 12.0 0.6 1 23 237 259 237 260 0.75 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF16-209 - 682 5.3e-52 170.0 116.4 3 17 0.00019 0.13 13.1 4.2 1 23 265 287 265 288 0.90 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF16-209 - 682 5.3e-52 170.0 116.4 4 17 4.3e-06 0.003 18.3 1.1 1 23 293 315 293 316 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF16-209 - 682 5.3e-52 170.0 116.4 5 17 2.2e-05 0.015 16.1 0.3 1 23 321 343 321 344 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF16-209 - 682 5.3e-52 170.0 116.4 6 17 2e-05 0.013 16.2 1.8 1 23 349 371 349 372 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF16-209 - 682 5.3e-52 170.0 116.4 7 17 1.5e-05 0.01 16.6 1.1 1 23 377 399 377 400 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF16-209 - 682 5.3e-52 170.0 116.4 8 17 2e-05 0.014 16.2 0.9 1 23 405 427 405 428 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF16-209 - 682 5.3e-52 170.0 116.4 9 17 6.5e-06 0.0045 17.7 0.6 1 23 433 455 433 456 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF16-209 - 682 5.3e-52 170.0 116.4 10 17 0.00016 0.11 13.4 0.8 1 23 461 483 461 484 0.84 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF16-209 - 682 5.3e-52 170.0 116.4 11 17 0.00012 0.083 13.8 0.6 1 23 489 511 489 512 0.90 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF16-209 - 682 5.3e-52 170.0 116.4 12 17 0.00024 0.16 12.8 0.7 1 23 517 539 517 540 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF16-209 - 682 5.3e-52 170.0 116.4 13 17 2.7e-06 0.0019 18.9 0.4 1 23 545 567 545 568 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF16-209 - 682 5.3e-52 170.0 116.4 14 17 4.1e-05 0.028 15.2 2.2 1 23 573 595 573 596 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF16-209 - 682 5.3e-52 170.0 116.4 15 17 0.00011 0.075 13.9 0.5 1 23 601 623 601 624 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF16-209 - 682 5.3e-52 170.0 116.4 16 17 4.1e-05 0.028 15.2 0.5 1 23 629 651 629 652 0.90 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF16-209 - 682 5.3e-52 170.0 116.4 17 17 0.0019 1.3 10.1 0.2 3 23 659 679 657 680 0.91 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF16-209 - 682 5.4e-28 96.4 113.8 1 17 0.0058 4 7.6 0.4 3 12 210 219 210 219 0.92 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF16-209 - 682 5.4e-28 96.4 113.8 2 17 0.071 49 4.1 0.3 2 12 237 247 236 248 0.88 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF16-209 - 682 5.4e-28 96.4 113.8 3 17 0.0016 1.1 9.3 0.3 1 12 264 275 264 275 0.91 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF16-209 - 682 5.4e-28 96.4 113.8 4 17 8.4e-05 0.058 13.4 3.1 2 27 293 318 293 318 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF16-209 - 682 5.4e-28 96.4 113.8 5 17 3.6e-05 0.025 14.6 0.4 2 24 321 343 321 346 0.90 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF16-209 - 682 5.4e-28 96.4 113.8 6 17 3.7e-06 0.0026 17.7 1.6 2 24 349 371 349 374 0.95 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF16-209 - 682 5.4e-28 96.4 113.8 7 17 0.017 12 6.0 1.6 2 22 377 397 377 401 0.82 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF16-209 - 682 5.4e-28 96.4 113.8 8 17 0.0012 0.85 9.7 0.4 2 24 405 427 405 430 0.92 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF16-209 - 682 5.4e-28 96.4 113.8 9 17 0.00085 0.58 10.2 0.7 2 24 433 455 433 458 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF16-209 - 682 5.4e-28 96.4 113.8 10 17 3.6e-05 0.025 14.6 0.6 2 21 461 480 461 485 0.91 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF16-209 - 682 5.4e-28 96.4 113.8 11 17 0.00044 0.3 11.1 0.7 2 20 489 507 489 508 0.87 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF16-209 - 682 5.4e-28 96.4 113.8 12 17 0.00047 0.32 11.0 0.7 2 24 517 539 517 542 0.84 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF16-209 - 682 5.4e-28 96.4 113.8 13 17 0.0002 0.14 12.2 0.4 2 12 545 555 545 567 0.88 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF16-209 - 682 5.4e-28 96.4 113.8 14 17 0.00018 0.12 12.4 2.5 2 24 573 595 573 598 0.92 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF16-209 - 682 5.4e-28 96.4 113.8 15 17 0.18 1.3e+02 2.8 0.2 2 12 601 611 601 621 0.89 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF16-209 - 682 5.4e-28 96.4 113.8 16 17 0.00054 0.37 10.8 0.5 2 20 629 647 629 652 0.79 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF16-209 - 682 5.4e-28 96.4 113.8 17 17 0.75 5.2e+02 0.8 0.2 2 12 657 667 657 675 0.83 C2H2-type zinc finger zf-C2H2_jaz PF12171.8 27 ZNF16-209 - 682 3.1e-20 71.9 66.1 1 17 0.37 2.5e+02 2.1 0.0 2 12 209 219 208 221 0.85 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF16-209 - 682 3.1e-20 71.9 66.1 2 17 0.032 22 5.5 0.2 2 19 237 254 236 254 0.89 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF16-209 - 682 3.1e-20 71.9 66.1 3 17 0.022 15 6.0 0.3 4 21 267 284 265 285 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF16-209 - 682 3.1e-20 71.9 66.1 4 17 0.00056 0.38 11.1 2.2 2 24 293 315 292 315 0.95 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF16-209 - 682 3.1e-20 71.9 66.1 5 17 0.0033 2.3 8.6 0.1 2 22 321 341 320 341 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF16-209 - 682 3.1e-20 71.9 66.1 6 17 0.029 20 5.6 0.2 2 20 349 367 348 371 0.89 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF16-209 - 682 3.1e-20 71.9 66.1 7 17 0.019 13 6.2 0.1 2 22 377 397 376 397 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF16-209 - 682 3.1e-20 71.9 66.1 8 17 0.22 1.5e+02 2.8 0.0 2 20 405 423 404 423 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF16-209 - 682 3.1e-20 71.9 66.1 9 17 0.044 30 5.0 0.0 2 21 433 452 432 453 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF16-209 - 682 3.1e-20 71.9 66.1 10 17 0.061 42 4.6 0.1 2 21 461 480 460 481 0.91 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF16-209 - 682 3.1e-20 71.9 66.1 11 17 0.0013 0.89 9.9 0.1 2 21 489 508 488 508 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF16-209 - 682 3.1e-20 71.9 66.1 12 17 0.0075 5.1 7.5 0.0 2 22 517 537 516 537 0.90 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF16-209 - 682 3.1e-20 71.9 66.1 13 17 0.00027 0.19 12.1 0.1 2 22 545 565 544 565 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF16-209 - 682 3.1e-20 71.9 66.1 14 17 0.14 95 3.5 0.8 2 22 573 593 572 593 0.88 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF16-209 - 682 3.1e-20 71.9 66.1 15 17 0.0036 2.5 8.5 0.1 2 21 601 620 600 621 0.91 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF16-209 - 682 3.1e-20 71.9 66.1 16 17 0.012 8.5 6.8 0.1 2 22 629 649 628 649 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF16-209 - 682 3.1e-20 71.9 66.1 17 17 0.24 1.6e+02 2.7 0.1 2 20 657 675 656 677 0.84 Zinc-finger double-stranded RNA-binding Zn-ribbon_8 PF09723.10 40 ZNF16-209 - 682 1e-19 70.4 82.6 1 13 0.017 11 6.2 2.7 8 35 211 245 208 248 0.78 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF16-209 - 682 1e-19 70.4 82.6 2 13 0.00043 0.3 11.2 2.9 6 36 237 274 236 276 0.74 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF16-209 - 682 1e-19 70.4 82.6 3 13 0.00038 0.26 11.4 4.6 6 35 265 301 260 305 0.85 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF16-209 - 682 1e-19 70.4 82.6 4 13 2.6e-05 0.018 15.2 4.0 6 38 293 332 292 333 0.88 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF16-209 - 682 1e-19 70.4 82.6 5 13 3.3e-06 0.0023 18.0 2.4 6 38 321 360 319 362 0.93 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF16-209 - 682 1e-19 70.4 82.6 6 13 3.8e-05 0.026 14.6 3.2 6 39 377 417 376 418 0.93 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF16-209 - 682 1e-19 70.4 82.6 7 13 3.1e-05 0.022 14.9 1.1 6 34 433 468 432 471 0.86 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF16-209 - 682 1e-19 70.4 82.6 8 13 5.6e-05 0.039 14.1 1.0 6 35 489 525 488 529 0.88 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF16-209 - 682 1e-19 70.4 82.6 9 13 7.3e-06 0.005 16.9 2.1 6 38 545 584 544 586 0.89 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF16-209 - 682 1e-19 70.4 82.6 10 13 0.0011 0.78 9.9 3.1 7 34 574 608 573 613 0.90 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF16-209 - 682 1e-19 70.4 82.6 11 13 0.0021 1.5 9.0 3.3 6 35 601 637 600 641 0.81 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF16-209 - 682 1e-19 70.4 82.6 12 13 4e-05 0.027 14.6 1.4 6 36 629 666 628 670 0.89 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF16-209 - 682 1e-19 70.4 82.6 13 13 0.021 14 5.8 0.1 6 20 657 671 656 677 0.83 Zinc ribbon domain XPA_N PF01286.18 32 ZNF16-209 - 682 4.4e-17 61.8 60.7 1 17 0.021 15 5.7 0.2 3 12 210 219 208 220 0.87 XPA protein N-terminal XPA_N PF01286.18 32 ZNF16-209 - 682 4.4e-17 61.8 60.7 2 17 0.024 16 5.6 0.2 4 12 239 247 238 254 0.85 XPA protein N-terminal XPA_N PF01286.18 32 ZNF16-209 - 682 4.4e-17 61.8 60.7 3 17 0.062 43 4.3 0.1 3 11 266 274 264 276 0.88 XPA protein N-terminal XPA_N PF01286.18 32 ZNF16-209 - 682 4.4e-17 61.8 60.7 4 17 0.032 22 5.2 0.1 3 12 294 303 292 309 0.88 XPA protein N-terminal XPA_N PF01286.18 32 ZNF16-209 - 682 4.4e-17 61.8 60.7 5 17 0.01 6.9 6.8 0.1 3 14 322 333 320 336 0.89 XPA protein N-terminal XPA_N PF01286.18 32 ZNF16-209 - 682 4.4e-17 61.8 60.7 6 17 0.015 10 6.3 0.0 3 14 350 361 348 367 0.88 XPA protein N-terminal XPA_N PF01286.18 32 ZNF16-209 - 682 4.4e-17 61.8 60.7 7 17 0.0075 5.1 7.2 0.1 3 14 378 389 376 395 0.87 XPA protein N-terminal XPA_N PF01286.18 32 ZNF16-209 - 682 4.4e-17 61.8 60.7 8 17 0.029 20 5.3 0.0 3 12 406 415 404 426 0.85 XPA protein N-terminal XPA_N PF01286.18 32 ZNF16-209 - 682 4.4e-17 61.8 60.7 9 17 0.015 10 6.2 0.5 3 14 434 445 432 448 0.92 XPA protein N-terminal XPA_N PF01286.18 32 ZNF16-209 - 682 4.4e-17 61.8 60.7 10 17 0.23 1.6e+02 2.5 0.0 3 14 462 473 460 479 0.79 XPA protein N-terminal XPA_N PF01286.18 32 ZNF16-209 - 682 4.4e-17 61.8 60.7 11 17 0.27 1.9e+02 2.2 0.0 3 14 490 501 488 505 0.85 XPA protein N-terminal XPA_N PF01286.18 32 ZNF16-209 - 682 4.4e-17 61.8 60.7 12 17 0.013 8.7 6.5 0.1 4 14 519 529 516 530 0.90 XPA protein N-terminal XPA_N PF01286.18 32 ZNF16-209 - 682 4.4e-17 61.8 60.7 13 17 0.0034 2.3 8.3 0.2 3 14 546 557 544 561 0.92 XPA protein N-terminal XPA_N PF01286.18 32 ZNF16-209 - 682 4.4e-17 61.8 60.7 14 17 0.033 23 5.2 0.2 3 14 574 585 572 587 0.88 XPA protein N-terminal XPA_N PF01286.18 32 ZNF16-209 - 682 4.4e-17 61.8 60.7 15 17 0.0049 3.4 7.8 0.1 3 14 602 613 600 617 0.91 XPA protein N-terminal XPA_N PF01286.18 32 ZNF16-209 - 682 4.4e-17 61.8 60.7 16 17 0.014 9.9 6.3 0.1 3 12 630 639 628 647 0.83 XPA protein N-terminal XPA_N PF01286.18 32 ZNF16-209 - 682 4.4e-17 61.8 60.7 17 17 0.21 1.5e+02 2.6 0.0 3 16 658 672 656 675 0.74 XPA protein N-terminal zf_UBZ PF18439.1 32 ZNF16-209 - 682 1e-13 50.6 67.3 1 17 0.12 85 2.9 0.1 4 13 210 219 207 224 0.85 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF16-209 - 682 1e-13 50.6 67.3 2 17 0.0037 2.6 7.7 0.1 2 15 236 249 235 252 0.85 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF16-209 - 682 1e-13 50.6 67.3 3 17 0.0052 3.6 7.3 0.2 3 20 265 283 263 284 0.76 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF16-209 - 682 1e-13 50.6 67.3 4 17 0.022 15 5.2 0.1 3 20 293 311 291 312 0.82 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF16-209 - 682 1e-13 50.6 67.3 5 17 0.046 32 4.2 0.1 3 20 321 339 319 340 0.79 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF16-209 - 682 1e-13 50.6 67.3 6 17 0.0068 4.7 6.9 0.1 3 12 349 358 347 367 0.84 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF16-209 - 682 1e-13 50.6 67.3 7 17 0.024 16 5.2 0.2 3 16 377 391 375 396 0.79 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF16-209 - 682 1e-13 50.6 67.3 8 17 0.049 34 4.2 0.1 3 13 405 415 403 423 0.87 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF16-209 - 682 1e-13 50.6 67.3 9 17 0.0014 0.94 9.1 0.1 3 20 433 451 431 452 0.86 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF16-209 - 682 1e-13 50.6 67.3 10 17 2 1.4e+03 -1.0 0.0 3 13 461 471 460 476 0.82 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF16-209 - 682 1e-13 50.6 67.3 11 17 0.014 9.7 5.9 0.1 3 21 489 508 487 508 0.89 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF16-209 - 682 1e-13 50.6 67.3 12 17 0.084 58 3.4 0.1 3 12 517 526 515 531 0.88 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF16-209 - 682 1e-13 50.6 67.3 13 17 0.0015 1 9.0 0.3 3 21 545 564 543 564 0.87 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF16-209 - 682 1e-13 50.6 67.3 14 17 0.34 2.4e+02 1.4 0.3 4 15 574 585 572 592 0.77 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF16-209 - 682 1e-13 50.6 67.3 15 17 0.015 10 5.8 0.2 3 20 601 619 599 620 0.82 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF16-209 - 682 1e-13 50.6 67.3 16 17 0.0043 3 7.5 0.1 3 15 629 641 627 648 0.82 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF16-209 - 682 1e-13 50.6 67.3 17 17 0.042 29 4.4 0.1 3 16 657 671 655 676 0.78 Ubiquitin-Binding Zinc Finger zinc_ribbon_15 PF17032.5 86 ZNF16-209 - 682 5.1e-11 43.2 64.4 1 14 2.1 1.4e+03 0.1 0.1 66 76 209 219 188 224 0.70 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF16-209 - 682 5.1e-11 43.2 64.4 2 14 0.001 0.69 10.7 5.8 32 81 231 280 209 283 0.87 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF16-209 - 682 5.1e-11 43.2 64.4 3 14 0.00039 0.27 12.0 4.4 36 78 291 333 283 336 0.85 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF16-209 - 682 5.1e-11 43.2 64.4 4 14 0.0007 0.48 11.2 0.8 30 78 341 389 335 392 0.86 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF16-209 - 682 5.1e-11 43.2 64.4 5 14 0.0062 4.2 8.2 3.9 28 75 367 414 350 420 0.79 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF16-209 - 682 5.1e-11 43.2 64.4 6 14 0.0045 3.1 8.6 1.4 32 78 399 445 393 448 0.86 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF16-209 - 682 5.1e-11 43.2 64.4 7 14 0.00086 0.59 10.9 1.0 28 76 423 471 418 475 0.86 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF16-209 - 682 5.1e-11 43.2 64.4 8 14 0.015 10 7.0 0.4 30 78 453 501 447 504 0.81 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF16-209 - 682 5.1e-11 43.2 64.4 9 14 0.003 2.1 9.2 0.4 35 75 486 526 475 532 0.83 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF16-209 - 682 5.1e-11 43.2 64.4 10 14 0.002 1.4 9.7 0.7 33 78 512 557 503 560 0.84 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF16-209 - 682 5.1e-11 43.2 64.4 11 14 0.00065 0.45 11.3 1.4 31 78 538 585 532 589 0.85 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF16-209 - 682 5.1e-11 43.2 64.4 12 14 0.071 49 4.8 5.4 49 78 556 585 547 618 0.50 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF16-209 - 682 5.1e-11 43.2 64.4 13 14 0.015 10 7.0 1.3 30 77 593 640 586 642 0.83 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF16-209 - 682 5.1e-11 43.2 64.4 14 14 0.003 2.1 9.2 0.7 34 78 625 669 615 673 0.84 zinc-ribbon family zf-LYAR PF08790.11 28 ZNF16-209 - 682 6.6e-08 32.3 74.2 1 17 0.053 37 4.3 0.1 2 13 210 221 209 223 0.86 LYAR-type C2HC zinc finger zf-LYAR PF08790.11 28 ZNF16-209 - 682 6.6e-08 32.3 74.2 2 17 0.00042 0.29 11.1 0.2 1 24 237 262 237 264 0.74 LYAR-type C2HC zinc finger zf-LYAR PF08790.11 28 ZNF16-209 - 682 6.6e-08 32.3 74.2 3 17 0.025 17 5.4 1.0 1 20 265 285 265 285 0.90 LYAR-type C2HC zinc finger zf-LYAR PF08790.11 28 ZNF16-209 - 682 6.6e-08 32.3 74.2 4 17 0.011 7.9 6.5 0.4 1 20 293 313 293 318 0.89 LYAR-type C2HC zinc finger zf-LYAR PF08790.11 28 ZNF16-209 - 682 6.6e-08 32.3 74.2 5 17 0.26 1.8e+02 2.2 0.0 2 18 322 339 321 341 0.77 LYAR-type C2HC zinc finger zf-LYAR PF08790.11 28 ZNF16-209 - 682 6.6e-08 32.3 74.2 6 17 0.16 1.1e+02 2.9 0.1 1 13 349 362 349 369 0.76 LYAR-type C2HC zinc finger zf-LYAR PF08790.11 28 ZNF16-209 - 682 6.6e-08 32.3 74.2 7 17 0.15 1.1e+02 2.9 0.1 1 18 377 395 377 397 0.80 LYAR-type C2HC zinc finger zf-LYAR PF08790.11 28 ZNF16-209 - 682 6.6e-08 32.3 74.2 8 17 0.026 18 5.3 0.1 1 15 405 420 405 425 0.75 LYAR-type C2HC zinc finger zf-LYAR PF08790.11 28 ZNF16-209 - 682 6.6e-08 32.3 74.2 9 17 0.0041 2.9 7.9 0.2 1 18 433 451 433 453 0.80 LYAR-type C2HC zinc finger zf-LYAR PF08790.11 28 ZNF16-209 - 682 6.6e-08 32.3 74.2 10 17 2.2 1.5e+03 -0.8 0.1 6 15 466 475 462 480 0.75 LYAR-type C2HC zinc finger zf-LYAR PF08790.11 28 ZNF16-209 - 682 6.6e-08 32.3 74.2 11 17 2.6 1.8e+03 -1.0 0.1 3 13 491 501 489 508 0.72 LYAR-type C2HC zinc finger zf-LYAR PF08790.11 28 ZNF16-209 - 682 6.6e-08 32.3 74.2 12 17 0.12 84 3.2 0.0 1 12 517 528 517 536 0.82 LYAR-type C2HC zinc finger zf-LYAR PF08790.11 28 ZNF16-209 - 682 6.6e-08 32.3 74.2 13 17 0.0036 2.5 8.1 0.4 1 18 545 563 545 565 0.82 LYAR-type C2HC zinc finger zf-LYAR PF08790.11 28 ZNF16-209 - 682 6.6e-08 32.3 74.2 14 17 0.14 98 3.0 0.3 3 17 575 589 574 593 0.73 LYAR-type C2HC zinc finger zf-LYAR PF08790.11 28 ZNF16-209 - 682 6.6e-08 32.3 74.2 15 17 0.0011 0.75 9.7 0.3 1 14 601 614 601 620 0.83 LYAR-type C2HC zinc finger zf-LYAR PF08790.11 28 ZNF16-209 - 682 6.6e-08 32.3 74.2 16 17 0.14 96 3.0 0.1 1 15 629 643 629 648 0.83 LYAR-type C2HC zinc finger zf-LYAR PF08790.11 28 ZNF16-209 - 682 6.6e-08 32.3 74.2 17 17 0.28 1.9e+02 2.0 0.1 1 13 657 670 657 676 0.76 LYAR-type C2HC zinc finger # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF16-209.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF16-209.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF16-209.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF16-209.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF16-209.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:00:39 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZNF165-201 - 293 2.5e-36 122.5 41.3 1 7 6.6 4.6e+03 -1.6 0.4 17 25 100 110 93 110 0.78 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF165-201 - 293 2.5e-36 122.5 41.3 2 7 2.1e-05 0.015 15.7 0.7 2 26 139 163 138 163 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF165-201 - 293 2.5e-36 122.5 41.3 3 7 5.2e-09 3.6e-06 27.2 1.0 2 25 167 190 166 191 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF165-201 - 293 2.5e-36 122.5 41.3 4 7 1.3e-09 9.2e-07 29.0 0.3 1 25 194 218 194 218 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF165-201 - 293 2.5e-36 122.5 41.3 5 7 3.6e-11 2.5e-08 34.0 2.2 1 24 222 245 222 246 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF165-201 - 293 2.5e-36 122.5 41.3 6 7 1.7e-12 1.1e-09 38.2 0.7 1 25 250 274 250 275 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF165-201 - 293 2.5e-36 122.5 41.3 7 7 0.046 31 5.2 0.2 1 13 278 290 278 292 0.89 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZNF165-201 - 293 1.1e-33 113.7 42.9 1 7 0.0054 3.7 8.2 0.4 3 20 100 119 98 121 0.91 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF165-201 - 293 1.1e-33 113.7 42.9 2 7 2.9 2e+03 -0.4 0.0 7 14 131 138 131 143 0.73 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF165-201 - 293 1.1e-33 113.7 42.9 3 7 1.4e-08 9.8e-06 25.8 3.5 1 23 152 174 152 174 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF165-201 - 293 1.1e-33 113.7 42.9 4 7 2e-09 1.4e-06 28.5 0.4 1 23 180 202 180 202 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF165-201 - 293 1.1e-33 113.7 42.9 5 7 1.5e-07 0.0001 22.5 1.1 3 23 210 230 208 230 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF165-201 - 293 1.1e-33 113.7 42.9 6 7 1.9e-08 1.3e-05 25.4 2.1 1 23 236 258 236 258 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF165-201 - 293 1.1e-33 113.7 42.9 7 7 1.8e-09 1.2e-06 28.6 0.4 1 23 264 286 264 286 0.98 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZNF165-201 - 293 9.5e-18 63.4 38.9 1 6 0.43 3e+02 2.7 0.3 2 19 99 118 98 121 0.75 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF165-201 - 293 9.5e-18 63.4 38.9 2 6 0.00025 0.17 12.8 2.7 1 23 152 174 152 175 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF165-201 - 293 9.5e-18 63.4 38.9 3 6 1.8e-06 0.0013 19.4 0.3 1 23 180 202 180 203 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF165-201 - 293 9.5e-18 63.4 38.9 4 6 9.1e-05 0.063 14.1 0.7 1 23 208 230 208 231 0.91 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF165-201 - 293 9.5e-18 63.4 38.9 5 6 3.1e-06 0.0021 18.7 1.7 1 23 236 258 236 259 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF165-201 - 293 9.5e-18 63.4 38.9 6 6 2.5e-06 0.0017 19.0 0.4 1 23 264 286 264 287 0.95 C2H2-type zinc finger zf-C2H2_11 PF16622.5 29 ZNF165-201 - 293 1.9e-09 37.1 30.7 1 5 4.3e-05 0.029 14.1 1.4 4 26 151 173 149 174 0.93 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF165-201 - 293 1.9e-09 37.1 30.7 2 5 5.7e-05 0.039 13.7 0.6 6 26 181 201 177 202 0.93 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF165-201 - 293 1.9e-09 37.1 30.7 3 5 0.0052 3.6 7.4 1.2 7 26 210 229 208 230 0.94 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF165-201 - 293 1.9e-09 37.1 30.7 4 5 0.0059 4 7.3 0.9 6 26 237 257 234 258 0.93 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF165-201 - 293 1.9e-09 37.1 30.7 5 5 7.5e-05 0.052 13.3 0.5 6 26 265 285 262 286 0.93 zinc-finger C2H2-type zf-C2H2_6 PF13912.6 27 ZNF165-201 - 293 3.5e-08 33.2 37.3 1 5 0.0013 0.93 9.6 0.7 2 12 152 162 151 163 0.91 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF165-201 - 293 3.5e-08 33.2 37.3 2 5 3.2e-05 0.022 14.7 1.1 2 24 180 202 179 205 0.88 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF165-201 - 293 3.5e-08 33.2 37.3 3 5 0.0078 5.4 7.1 1.7 2 25 208 227 208 229 0.81 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF165-201 - 293 3.5e-08 33.2 37.3 4 5 0.00015 0.1 12.6 1.0 2 12 236 246 236 246 0.95 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF165-201 - 293 3.5e-08 33.2 37.3 5 5 0.00025 0.17 11.9 0.8 2 26 264 288 264 289 0.87 C2H2-type zinc finger XPA_N PF01286.18 32 ZNF165-201 - 293 5.7e-08 32.7 15.6 1 5 0.0036 2.5 8.2 0.1 3 14 153 164 151 170 0.84 XPA protein N-terminal XPA_N PF01286.18 32 ZNF165-201 - 293 5.7e-08 32.7 15.6 2 5 0.0029 2 8.5 1.0 3 14 181 192 180 194 0.93 XPA protein N-terminal XPA_N PF01286.18 32 ZNF165-201 - 293 5.7e-08 32.7 15.6 3 5 0.044 31 4.7 0.0 4 12 210 218 209 226 0.80 XPA protein N-terminal XPA_N PF01286.18 32 ZNF165-201 - 293 5.7e-08 32.7 15.6 4 5 0.00075 0.52 10.4 0.0 3 21 237 256 235 258 0.79 XPA protein N-terminal XPA_N PF01286.18 32 ZNF165-201 - 293 5.7e-08 32.7 15.6 5 5 0.0058 4 7.6 0.3 3 14 265 276 263 281 0.91 XPA protein N-terminal # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF165-201.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF165-201.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF165-201.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF165-201.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF165-201.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:00:39 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZNF169-201 - 412 6.7e-72 234.9 74.2 1 13 0.059 37 5.0 0.4 13 24 41 52 37 52 0.85 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF169-201 - 412 6.7e-72 234.9 74.2 2 13 5.6e-11 3.4e-08 33.5 0.4 2 25 58 81 57 82 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF169-201 - 412 6.7e-72 234.9 74.2 3 13 4.7e-08 2.9e-05 24.3 1.8 2 24 86 108 85 110 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF169-201 - 412 6.7e-72 234.9 74.2 4 13 6.4e-08 4e-05 23.9 0.2 1 24 113 136 113 138 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF169-201 - 412 6.7e-72 234.9 74.2 5 13 2.5e-07 0.00016 22.0 0.2 2 24 142 164 141 164 0.90 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF169-201 - 412 6.7e-72 234.9 74.2 6 13 4e-07 0.00025 21.3 0.1 2 25 170 193 169 194 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF169-201 - 412 6.7e-72 234.9 74.2 7 13 3.2e-06 0.002 18.5 0.3 4 25 200 221 198 222 0.89 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF169-201 - 412 6.7e-72 234.9 74.2 8 13 9e-11 5.6e-08 32.9 0.2 2 25 226 249 225 250 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF169-201 - 412 6.7e-72 234.9 74.2 9 13 2.9e-09 1.8e-06 28.1 0.1 5 25 257 277 254 278 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF169-201 - 412 6.7e-72 234.9 74.2 10 13 3.1e-11 1.9e-08 34.4 0.4 2 24 282 304 281 305 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF169-201 - 412 6.7e-72 234.9 74.2 11 13 0.1 63 4.3 0.1 2 12 310 320 310 328 0.83 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF169-201 - 412 6.7e-72 234.9 74.2 12 13 0.005 3.1 8.4 0.5 6 24 342 360 335 362 0.83 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF169-201 - 412 6.7e-72 234.9 74.2 13 13 1.8e-09 1.1e-06 28.8 0.1 1 25 365 389 365 390 0.93 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZNF169-201 - 412 2.8e-64 210.1 97.4 1 14 0.62 3.8e+02 1.8 1.6 11 23 31 43 29 43 0.90 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF169-201 - 412 2.8e-64 210.1 97.4 2 14 1.8e-08 1.1e-05 25.6 3.2 1 23 43 65 43 65 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF169-201 - 412 2.8e-64 210.1 97.4 3 14 7.4e-08 4.6e-05 23.6 0.6 1 23 71 93 71 93 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF169-201 - 412 2.8e-64 210.1 97.4 4 14 9.1e-07 0.00056 20.2 3.8 1 23 99 121 99 121 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF169-201 - 412 2.8e-64 210.1 97.4 5 14 3.5e-07 0.00022 21.5 0.2 1 23 127 149 127 149 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF169-201 - 412 2.8e-64 210.1 97.4 6 14 2.9e-07 0.00018 21.8 0.8 1 23 155 177 155 177 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF169-201 - 412 2.8e-64 210.1 97.4 7 14 2.9e-07 0.00018 21.8 0.5 2 23 184 205 183 205 0.94 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF169-201 - 412 2.8e-64 210.1 97.4 8 14 4.5e-08 2.8e-05 24.3 1.5 1 23 211 233 211 233 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF169-201 - 412 2.8e-64 210.1 97.4 9 14 1e-06 0.00063 20.1 0.2 1 23 239 261 239 261 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF169-201 - 412 2.8e-64 210.1 97.4 10 14 9e-08 5.6e-05 23.4 0.2 1 23 267 289 267 289 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF169-201 - 412 2.8e-64 210.1 97.4 11 14 4.1e-08 2.5e-05 24.5 1.0 1 23 295 317 295 317 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF169-201 - 412 2.8e-64 210.1 97.4 12 14 5.4 3.3e+03 -1.1 0.0 5 18 327 340 326 345 0.81 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF169-201 - 412 2.8e-64 210.1 97.4 13 14 7.7e-07 0.00047 20.5 0.8 2 23 352 373 351 373 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF169-201 - 412 2.8e-64 210.1 97.4 14 14 2e-07 0.00012 22.3 3.8 1 22 379 400 379 404 0.94 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZNF169-201 - 412 2.3e-42 140.0 90.5 1 13 3.8 2.3e+03 -0.1 0.8 12 23 32 43 29 44 0.74 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF169-201 - 412 2.3e-42 140.0 90.5 2 13 7e-06 0.0043 17.8 2.2 1 23 43 65 43 66 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF169-201 - 412 2.3e-42 140.0 90.5 3 13 1.1e-06 0.00069 20.2 0.7 1 23 71 93 71 94 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF169-201 - 412 2.3e-42 140.0 90.5 4 13 0.00017 0.1 13.5 2.5 1 23 99 121 99 122 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF169-201 - 412 2.3e-42 140.0 90.5 5 13 0.00013 0.078 13.9 0.2 1 23 127 149 127 150 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF169-201 - 412 2.3e-42 140.0 90.5 6 13 5.3e-06 0.0033 18.1 1.4 1 23 155 177 155 178 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF169-201 - 412 2.3e-42 140.0 90.5 7 13 0.00011 0.066 14.1 0.8 1 23 183 205 183 206 0.91 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF169-201 - 412 2.3e-42 140.0 90.5 8 13 0.0001 0.065 14.1 1.3 1 23 211 233 211 234 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF169-201 - 412 2.3e-42 140.0 90.5 9 13 1.5e-06 0.00096 19.8 0.2 1 23 239 261 239 262 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF169-201 - 412 2.3e-42 140.0 90.5 10 13 4.8e-06 0.003 18.3 0.1 1 23 267 289 267 290 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF169-201 - 412 2.3e-42 140.0 90.5 11 13 2.2e-05 0.014 16.2 0.8 1 23 295 317 295 318 0.89 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF169-201 - 412 2.3e-42 140.0 90.5 12 13 2.1e-05 0.013 16.3 0.7 2 23 352 373 351 374 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF169-201 - 412 2.3e-42 140.0 90.5 13 13 2e-05 0.013 16.3 2.6 1 22 379 400 379 402 0.93 C2H2-type zinc finger Zn-ribbon_8 PF09723.10 40 ZNF169-201 - 412 1.1e-12 47.9 55.8 1 12 0.076 47 4.2 1.4 25 34 41 50 33 56 0.69 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF169-201 - 412 1.1e-12 47.9 55.8 2 12 0.0023 1.4 9.1 5.8 7 35 44 79 41 84 0.88 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF169-201 - 412 1.1e-12 47.9 55.8 3 12 0.00044 0.28 11.4 4.2 6 35 71 107 69 110 0.83 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF169-201 - 412 1.1e-12 47.9 55.8 4 12 0.022 14 5.9 0.6 6 16 99 109 98 121 0.83 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF169-201 - 412 1.1e-12 47.9 55.8 5 12 1.3e-05 0.0082 16.2 1.3 6 34 127 162 126 169 0.85 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF169-201 - 412 1.1e-12 47.9 55.8 6 12 0.036 22 5.3 3.9 6 38 155 194 155 196 0.84 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF169-201 - 412 1.1e-12 47.9 55.8 7 12 0.3 1.9e+02 2.3 0.2 6 16 183 193 181 201 0.83 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF169-201 - 412 1.1e-12 47.9 55.8 8 12 4.6e-07 0.00028 20.9 1.4 6 35 211 248 210 253 0.86 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF169-201 - 412 1.1e-12 47.9 55.8 9 12 2.9e-05 0.018 15.1 0.4 6 34 267 302 266 304 0.90 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF169-201 - 412 1.1e-12 47.9 55.8 10 12 0.67 4.1e+02 1.2 1.1 25 34 348 358 340 365 0.68 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF169-201 - 412 1.1e-12 47.9 55.8 11 12 0.19 1.1e+02 3.0 6.4 8 34 353 386 349 391 0.81 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF169-201 - 412 1.1e-12 47.9 55.8 12 12 0.016 9.6 6.4 0.5 6 17 379 390 376 401 0.80 Zinc ribbon domain ADK_lid PF05191.14 36 ZNF169-201 - 412 1.6e-10 40.8 43.8 1 11 0.0066 4.1 7.5 0.5 20 36 41 57 38 57 0.83 Adenylate kinase, active site lid ADK_lid PF05191.14 36 ZNF169-201 - 412 1.6e-10 40.8 43.8 2 11 0.079 49 4.0 8.4 3 33 44 82 43 109 0.76 Adenylate kinase, active site lid ADK_lid PF05191.14 36 ZNF169-201 - 412 1.6e-10 40.8 43.8 3 11 0.021 13 5.9 5.1 3 29 128 162 99 168 0.71 Adenylate kinase, active site lid ADK_lid PF05191.14 36 ZNF169-201 - 412 1.6e-10 40.8 43.8 4 11 0.035 22 5.2 0.3 3 11 156 164 155 177 0.85 Adenylate kinase, active site lid ADK_lid PF05191.14 36 ZNF169-201 - 412 1.6e-10 40.8 43.8 5 11 0.00053 0.33 11.0 0.1 3 32 184 221 183 224 0.84 Adenylate kinase, active site lid ADK_lid PF05191.14 36 ZNF169-201 - 412 1.6e-10 40.8 43.8 6 11 0.001 0.64 10.0 0.5 3 29 240 274 239 278 0.72 Adenylate kinase, active site lid ADK_lid PF05191.14 36 ZNF169-201 - 412 1.6e-10 40.8 43.8 7 11 0.061 38 4.4 0.1 3 11 268 276 267 290 0.82 Adenylate kinase, active site lid ADK_lid PF05191.14 36 ZNF169-201 - 412 1.6e-10 40.8 43.8 8 11 0.0035 2.2 8.4 0.1 3 33 296 334 295 336 0.69 Adenylate kinase, active site lid ADK_lid PF05191.14 36 ZNF169-201 - 412 1.6e-10 40.8 43.8 9 11 0.23 1.4e+02 2.5 1.1 22 28 351 357 343 360 0.77 Adenylate kinase, active site lid ADK_lid PF05191.14 36 ZNF169-201 - 412 1.6e-10 40.8 43.8 10 11 0.045 28 4.8 4.1 3 33 352 390 351 392 0.75 Adenylate kinase, active site lid ADK_lid PF05191.14 36 ZNF169-201 - 412 1.6e-10 40.8 43.8 11 11 0.027 17 5.5 0.2 3 12 380 389 379 403 0.80 Adenylate kinase, active site lid FYDLN_acid PF09538.10 106 ZNF169-201 - 412 1.2e-09 38.8 23.7 1 10 0.02 12 6.6 1.2 11 44 44 88 40 97 0.59 Protein of unknown function (FYDLN_acid) FYDLN_acid PF09538.10 106 ZNF169-201 - 412 1.2e-09 38.8 23.7 2 10 0.33 2e+02 2.7 0.0 25 44 97 116 95 125 0.74 Protein of unknown function (FYDLN_acid) FYDLN_acid PF09538.10 106 ZNF169-201 - 412 1.2e-09 38.8 23.7 3 10 0.014 8.4 7.1 0.1 22 41 150 169 148 181 0.76 Protein of unknown function (FYDLN_acid) FYDLN_acid PF09538.10 106 ZNF169-201 - 412 1.2e-09 38.8 23.7 4 10 0.17 1.1e+02 3.6 0.0 24 47 180 203 178 209 0.79 Protein of unknown function (FYDLN_acid) FYDLN_acid PF09538.10 106 ZNF169-201 - 412 1.2e-09 38.8 23.7 5 10 0.079 49 4.7 0.1 24 42 208 226 206 237 0.73 Protein of unknown function (FYDLN_acid) FYDLN_acid PF09538.10 106 ZNF169-201 - 412 1.2e-09 38.8 23.7 6 10 0.15 92 3.8 0.0 24 41 236 253 233 265 0.77 Protein of unknown function (FYDLN_acid) FYDLN_acid PF09538.10 106 ZNF169-201 - 412 1.2e-09 38.8 23.7 7 10 0.31 1.9e+02 2.8 0.0 24 41 264 281 262 293 0.72 Protein of unknown function (FYDLN_acid) FYDLN_acid PF09538.10 106 ZNF169-201 - 412 1.2e-09 38.8 23.7 8 10 0.0054 3.4 8.4 0.0 24 51 292 319 289 327 0.72 Protein of unknown function (FYDLN_acid) FYDLN_acid PF09538.10 106 ZNF169-201 - 412 1.2e-09 38.8 23.7 9 10 1.3 8.3e+02 0.7 0.0 25 42 349 366 347 377 0.71 Protein of unknown function (FYDLN_acid) FYDLN_acid PF09538.10 106 ZNF169-201 - 412 1.2e-09 38.8 23.7 10 10 0.2 1.2e+02 3.4 0.0 24 46 376 399 374 409 0.74 Protein of unknown function (FYDLN_acid) zf-C2H2_6 PF13912.6 27 ZNF169-201 - 412 1.5e-09 37.6 74.4 1 12 0.0037 2.3 8.3 2.8 1 24 42 65 42 68 0.92 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF169-201 - 412 1.5e-09 37.6 74.4 2 12 0.0052 3.2 7.9 0.5 2 24 71 93 71 96 0.74 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF169-201 - 412 1.5e-09 37.6 74.4 3 12 0.00022 0.14 12.2 1.8 2 25 99 122 99 124 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF169-201 - 412 1.5e-09 37.6 74.4 4 12 0.0033 2.1 8.5 0.2 2 25 127 150 127 152 0.82 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF169-201 - 412 1.5e-09 37.6 74.4 5 12 0.084 52 4.0 1.0 2 11 155 164 155 179 0.82 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF169-201 - 412 1.5e-09 37.6 74.4 6 12 0.059 37 4.5 0.3 2 14 183 195 183 207 0.80 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF169-201 - 412 1.5e-09 37.6 74.4 7 12 0.006 3.7 7.7 0.9 2 24 211 233 211 236 0.92 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF169-201 - 412 1.5e-09 37.6 74.4 8 12 0.00024 0.15 12.1 0.2 2 24 239 261 239 264 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF169-201 - 412 1.5e-09 37.6 74.4 9 12 0.17 1.1e+02 3.0 0.1 2 24 267 289 267 292 0.89 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF169-201 - 412 1.5e-09 37.6 74.4 10 12 0.25 1.6e+02 2.5 0.8 2 12 295 305 295 320 0.80 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF169-201 - 412 1.5e-09 37.6 74.4 11 12 0.0012 0.73 9.9 0.1 3 25 352 374 352 376 0.92 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF169-201 - 412 1.5e-09 37.6 74.4 12 12 0.13 81 3.4 0.6 2 12 379 389 379 401 0.86 C2H2-type zinc finger Zn_ribbon_SprT PF17283.2 38 ZNF169-201 - 412 1.6e-09 37.5 51.6 1 9 0.052 32 4.5 5.2 5 37 43 83 42 84 0.72 SprT-like zinc ribbon domain Zn_ribbon_SprT PF17283.2 38 ZNF169-201 - 412 1.6e-09 37.5 51.6 2 9 0.029 18 5.3 0.2 5 14 71 80 70 90 0.86 SprT-like zinc ribbon domain Zn_ribbon_SprT PF17283.2 38 ZNF169-201 - 412 1.6e-09 37.5 51.6 3 9 0.00098 0.6 10.1 5.4 5 37 99 139 98 140 0.94 SprT-like zinc ribbon domain Zn_ribbon_SprT PF17283.2 38 ZNF169-201 - 412 1.6e-09 37.5 51.6 4 9 0.49 3e+02 1.4 0.1 6 12 156 162 155 164 0.82 SprT-like zinc ribbon domain Zn_ribbon_SprT PF17283.2 38 ZNF169-201 - 412 1.6e-09 37.5 51.6 5 9 0.1 63 3.6 0.7 7 37 185 223 183 224 0.65 SprT-like zinc ribbon domain Zn_ribbon_SprT PF17283.2 38 ZNF169-201 - 412 1.6e-09 37.5 51.6 6 9 0.002 1.3 9.0 1.9 5 36 211 250 210 252 0.71 SprT-like zinc ribbon domain Zn_ribbon_SprT PF17283.2 38 ZNF169-201 - 412 1.6e-09 37.5 51.6 7 9 1e-05 0.0063 16.4 1.0 5 37 267 307 266 308 0.89 SprT-like zinc ribbon domain Zn_ribbon_SprT PF17283.2 38 ZNF169-201 - 412 1.6e-09 37.5 51.6 8 9 9.1e-07 0.00056 19.8 0.0 5 37 295 335 294 336 0.95 SprT-like zinc ribbon domain Zn_ribbon_SprT PF17283.2 38 ZNF169-201 - 412 1.6e-09 37.5 51.6 9 9 0.007 4.3 7.3 2.4 7 37 353 391 352 392 0.79 SprT-like zinc ribbon domain DZR PF12773.7 49 ZNF169-201 - 412 1e-08 35.0 45.2 1 1 0.0058 3.6 7.7 1.5 12 40 350 390 327 394 0.79 Double zinc ribbon DUF3268 PF11672.8 118 ZNF169-201 - 412 3.4e-08 33.8 31.5 1 10 0.0007 0.43 10.9 0.8 3 38 43 78 41 94 0.77 zinc-finger-containing domain DUF3268 PF11672.8 118 ZNF169-201 - 412 3.4e-08 33.8 31.5 2 10 1.1e-05 0.0068 16.7 0.8 2 42 70 110 69 123 0.90 zinc-finger-containing domain DUF3268 PF11672.8 118 ZNF169-201 - 412 3.4e-08 33.8 31.5 3 10 0.004 2.5 8.5 0.9 2 37 98 133 96 141 0.89 zinc-finger-containing domain DUF3268 PF11672.8 118 ZNF169-201 - 412 3.4e-08 33.8 31.5 4 10 0.039 24 5.3 0.4 3 37 127 161 125 169 0.88 zinc-finger-containing domain DUF3268 PF11672.8 118 ZNF169-201 - 412 3.4e-08 33.8 31.5 5 10 0.032 20 5.6 0.2 2 41 154 193 153 198 0.73 zinc-finger-containing domain DUF3268 PF11672.8 118 ZNF169-201 - 412 3.4e-08 33.8 31.5 6 10 0.046 28 5.1 0.3 4 41 184 221 181 235 0.74 zinc-finger-containing domain DUF3268 PF11672.8 118 ZNF169-201 - 412 3.4e-08 33.8 31.5 7 10 0.008 5 7.5 0.6 2 37 210 245 209 255 0.76 zinc-finger-containing domain DUF3268 PF11672.8 118 ZNF169-201 - 412 3.4e-08 33.8 31.5 8 10 0.0072 4.4 7.7 0.3 3 38 239 274 237 281 0.74 zinc-finger-containing domain DUF3268 PF11672.8 118 ZNF169-201 - 412 3.4e-08 33.8 31.5 9 10 0.0052 3.2 8.1 0.2 3 42 267 306 265 322 0.74 zinc-finger-containing domain DUF3268 PF11672.8 118 ZNF169-201 - 412 3.4e-08 33.8 31.5 10 10 0.0024 1.5 9.2 0.5 2 37 350 385 349 403 0.83 zinc-finger-containing domain zf-C2H2_11 PF16622.5 29 ZNF169-201 - 412 6.6e-08 32.2 71.0 1 12 0.54 3.3e+02 1.1 1.4 7 23 45 61 41 64 0.78 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF169-201 - 412 6.6e-08 32.2 71.0 2 12 0.00062 0.38 10.6 0.6 7 23 73 89 71 91 0.92 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF169-201 - 412 6.6e-08 32.2 71.0 3 12 0.0018 1.1 9.0 0.9 7 26 101 120 98 121 0.91 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF169-201 - 412 6.6e-08 32.2 71.0 4 12 0.052 32 4.4 0.3 7 20 129 142 127 147 0.81 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF169-201 - 412 6.6e-08 32.2 71.0 5 12 0.035 21 5.0 0.6 7 23 157 173 154 175 0.92 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF169-201 - 412 6.6e-08 32.2 71.0 6 12 0.034 21 5.0 0.5 7 15 185 193 183 203 0.82 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF169-201 - 412 6.6e-08 32.2 71.0 7 12 0.025 16 5.4 0.2 7 24 213 230 210 232 0.92 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF169-201 - 412 6.6e-08 32.2 71.0 8 12 0.045 28 4.6 0.2 7 21 241 255 239 259 0.83 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF169-201 - 412 6.6e-08 32.2 71.0 9 12 0.014 8.9 6.2 0.1 7 24 269 286 267 288 0.92 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF169-201 - 412 6.6e-08 32.2 71.0 10 12 0.03 18 5.2 0.6 7 24 297 314 295 316 0.92 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF169-201 - 412 6.6e-08 32.2 71.0 11 12 0.0067 4.1 7.2 0.2 5 24 351 370 348 372 0.90 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF169-201 - 412 6.6e-08 32.2 71.0 12 12 0.00012 0.073 12.8 2.0 7 25 381 399 378 400 0.95 zinc-finger C2H2-type zf-trcl PF13451.6 48 ZNF169-201 - 412 7.1e-08 32.2 37.8 1 12 0.48 3e+02 1.4 0.9 3 14 41 52 39 54 0.87 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF169-201 - 412 7.1e-08 32.2 37.8 2 12 0.17 1e+02 2.9 0.0 3 14 69 80 67 85 0.78 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF169-201 - 412 7.1e-08 32.2 37.8 3 12 0.00073 0.45 10.4 0.0 3 18 97 112 95 114 0.90 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF169-201 - 412 7.1e-08 32.2 37.8 4 12 0.08 49 3.9 0.1 3 14 125 136 124 137 0.86 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF169-201 - 412 7.1e-08 32.2 37.8 5 12 0.055 34 4.4 0.3 2 15 152 165 151 170 0.85 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF169-201 - 412 7.1e-08 32.2 37.8 6 12 0.42 2.6e+02 1.6 0.1 3 14 181 192 179 195 0.85 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF169-201 - 412 7.1e-08 32.2 37.8 7 12 0.04 25 4.9 0.1 3 14 209 220 207 221 0.89 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF169-201 - 412 7.1e-08 32.2 37.8 8 12 0.34 2.1e+02 1.9 0.0 3 14 237 248 235 249 0.78 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF169-201 - 412 7.1e-08 32.2 37.8 9 12 0.12 71 3.4 0.0 3 14 265 276 263 277 0.84 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF169-201 - 412 7.1e-08 32.2 37.8 10 12 0.067 41 4.2 0.0 3 16 293 306 291 309 0.85 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF169-201 - 412 7.1e-08 32.2 37.8 11 12 0.048 30 4.6 0.5 3 17 349 363 347 365 0.86 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF169-201 - 412 7.1e-08 32.2 37.8 12 12 0.026 16 5.5 0.0 3 14 377 388 375 389 0.88 Probable zinc-ribbon domain zf_UBZ PF18439.1 32 ZNF169-201 - 412 9.9e-08 31.5 49.3 1 12 0.067 41 3.9 1.0 2 12 42 52 41 62 0.78 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF169-201 - 412 9.9e-08 31.5 49.3 2 12 0.0016 1 9.0 0.1 3 15 71 83 69 90 0.83 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF169-201 - 412 9.9e-08 31.5 49.3 3 12 0.027 17 5.1 0.1 3 13 99 109 97 118 0.79 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF169-201 - 412 9.9e-08 31.5 49.3 4 12 0.056 35 4.1 0.0 3 11 127 135 125 145 0.86 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF169-201 - 412 9.9e-08 31.5 49.3 5 12 0.02 13 5.5 0.4 3 20 155 173 153 174 0.71 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF169-201 - 412 9.9e-08 31.5 49.3 6 12 0.023 14 5.4 0.0 3 21 183 202 181 202 0.85 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF169-201 - 412 9.9e-08 31.5 49.3 7 12 0.0085 5.3 6.7 0.1 3 12 211 220 209 230 0.84 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF169-201 - 412 9.9e-08 31.5 49.3 8 12 0.013 8.1 6.1 0.1 3 13 239 249 237 258 0.83 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF169-201 - 412 9.9e-08 31.5 49.3 9 12 0.045 28 4.4 0.1 3 10 267 274 265 278 0.86 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF169-201 - 412 9.9e-08 31.5 49.3 10 12 0.023 14 5.4 0.0 3 11 295 303 293 310 0.87 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF169-201 - 412 9.9e-08 31.5 49.3 11 12 1.1 6.6e+02 0.0 1.6 4 10 352 358 351 361 0.85 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF169-201 - 412 9.9e-08 31.5 49.3 12 12 0.072 45 3.8 0.1 3 13 379 389 377 394 0.83 Ubiquitin-Binding Zinc Finger zf-Di19 PF05605.12 54 ZNF169-201 - 412 2.6e-07 30.8 45.6 1 8 0.028 17 5.8 0.7 4 28 44 68 41 71 0.77 Drought induced 19 protein (Di19), zinc-binding zf-Di19 PF05605.12 54 ZNF169-201 - 412 2.6e-07 30.8 45.6 2 8 0.0096 5.9 7.3 3.8 3 48 71 117 69 150 0.80 Drought induced 19 protein (Di19), zinc-binding zf-Di19 PF05605.12 54 ZNF169-201 - 412 2.6e-07 30.8 45.6 3 8 0.053 33 4.9 2.9 3 20 155 173 125 177 0.60 Drought induced 19 protein (Di19), zinc-binding zf-Di19 PF05605.12 54 ZNF169-201 - 412 2.6e-07 30.8 45.6 4 8 0.0081 5 7.5 1.5 3 28 155 180 153 185 0.80 Drought induced 19 protein (Di19), zinc-binding zf-Di19 PF05605.12 54 ZNF169-201 - 412 2.6e-07 30.8 45.6 5 8 0.0071 4.4 7.7 1.3 3 48 183 229 181 235 0.75 Drought induced 19 protein (Di19), zinc-binding zf-Di19 PF05605.12 54 ZNF169-201 - 412 2.6e-07 30.8 45.6 6 8 3.8e-05 0.024 14.9 0.3 3 41 239 276 237 290 0.69 Drought induced 19 protein (Di19), zinc-binding zf-Di19 PF05605.12 54 ZNF169-201 - 412 2.6e-07 30.8 45.6 7 8 0.00081 0.5 10.7 0.2 3 32 295 324 293 345 0.87 Drought induced 19 protein (Di19), zinc-binding zf-Di19 PF05605.12 54 ZNF169-201 - 412 2.6e-07 30.8 45.6 8 8 0.78 4.8e+02 1.1 1.0 8 41 356 388 349 401 0.63 Drought induced 19 protein (Di19), zinc-binding zinc_ribbon_9 PF14369.6 35 ZNF169-201 - 412 2.9e-07 30.6 54.4 1 12 0.0059 3.6 7.9 1.1 21 31 43 52 35 55 0.77 zinc-ribbon zinc_ribbon_9 PF14369.6 35 ZNF169-201 - 412 2.9e-07 30.6 54.4 2 12 0.014 8.9 6.7 0.1 21 31 69 80 59 81 0.71 zinc-ribbon zinc_ribbon_9 PF14369.6 35 ZNF169-201 - 412 2.9e-07 30.6 54.4 3 12 1 6.5e+02 0.7 0.2 21 31 96 108 85 109 0.61 zinc-ribbon zinc_ribbon_9 PF14369.6 35 ZNF169-201 - 412 2.9e-07 30.6 54.4 4 12 0.21 1.3e+02 3.0 3.3 5 31 101 136 97 140 0.71 zinc-ribbon zinc_ribbon_9 PF14369.6 35 ZNF169-201 - 412 2.9e-07 30.6 54.4 5 12 0.002 1.3 9.4 0.6 19 31 153 164 144 167 0.71 zinc-ribbon zinc_ribbon_9 PF14369.6 35 ZNF169-201 - 412 2.9e-07 30.6 54.4 6 12 0.69 4.3e+02 1.3 0.1 22 31 182 192 171 193 0.70 zinc-ribbon zinc_ribbon_9 PF14369.6 35 ZNF169-201 - 412 2.9e-07 30.6 54.4 7 12 0.71 4.4e+02 1.3 0.3 19 31 209 220 200 220 0.68 zinc-ribbon zinc_ribbon_9 PF14369.6 35 ZNF169-201 - 412 2.9e-07 30.6 54.4 8 12 0.00086 0.53 10.6 0.2 20 31 231 248 218 251 0.64 zinc-ribbon zinc_ribbon_9 PF14369.6 35 ZNF169-201 - 412 2.9e-07 30.6 54.4 9 12 0.0041 2.6 8.4 0.1 21 31 265 276 255 276 0.73 zinc-ribbon zinc_ribbon_9 PF14369.6 35 ZNF169-201 - 412 2.9e-07 30.6 54.4 10 12 0.025 15 5.9 0.0 19 31 290 304 278 304 0.69 zinc-ribbon zinc_ribbon_9 PF14369.6 35 ZNF169-201 - 412 2.9e-07 30.6 54.4 11 12 0.45 2.8e+02 1.9 0.8 22 31 350 360 339 360 0.71 zinc-ribbon zinc_ribbon_9 PF14369.6 35 ZNF169-201 - 412 2.9e-07 30.6 54.4 12 12 0.12 71 3.8 0.1 18 31 376 388 366 389 0.69 zinc-ribbon # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF169-201.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF169-201.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF169-201.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF169-201.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF169-201.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:00:40 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZNF169-202 - 603 2.5e-72 236.3 64.8 1 13 0.085 57 4.4 0.4 13 24 232 243 228 243 0.85 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF169-202 - 603 2.5e-72 236.3 64.8 2 13 8.2e-11 5.5e-08 32.9 0.4 2 25 249 272 248 273 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF169-202 - 603 2.5e-72 236.3 64.8 3 13 6.9e-08 4.6e-05 23.7 1.8 2 24 277 299 276 301 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF169-202 - 603 2.5e-72 236.3 64.8 4 13 9.5e-08 6.3e-05 23.2 0.2 1 24 304 327 304 329 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF169-202 - 603 2.5e-72 236.3 64.8 5 13 3.7e-07 0.00025 21.3 0.2 2 24 333 355 332 355 0.90 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF169-202 - 603 2.5e-72 236.3 64.8 6 13 5.9e-07 0.00039 20.7 0.1 2 25 361 384 360 385 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF169-202 - 603 2.5e-72 236.3 64.8 7 13 4.7e-06 0.0031 17.9 0.3 4 25 391 412 389 413 0.89 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF169-202 - 603 2.5e-72 236.3 64.8 8 13 1.3e-10 8.8e-08 32.2 0.2 2 25 417 440 416 441 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF169-202 - 603 2.5e-72 236.3 64.8 9 13 4.2e-09 2.8e-06 27.5 0.1 5 25 448 468 445 469 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF169-202 - 603 2.5e-72 236.3 64.8 10 13 4.5e-11 3e-08 33.7 0.4 2 24 473 495 472 496 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF169-202 - 603 2.5e-72 236.3 64.8 11 13 0.15 97 3.7 0.1 2 12 501 511 501 519 0.83 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF169-202 - 603 2.5e-72 236.3 64.8 12 13 0.0073 4.9 7.8 0.5 6 24 533 551 526 553 0.83 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF169-202 - 603 2.5e-72 236.3 64.8 13 13 2.6e-09 1.8e-06 28.1 0.1 1 25 556 580 556 581 0.93 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZNF169-202 - 603 1.9e-62 204.4 95.4 1 13 0.85 5.7e+02 1.3 1.6 11 23 222 234 220 234 0.90 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF169-202 - 603 1.9e-62 204.4 95.4 2 13 2.6e-08 1.7e-05 25.0 3.2 1 23 234 256 234 256 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF169-202 - 603 1.9e-62 204.4 95.4 3 13 1.1e-07 7.3e-05 23.0 0.6 1 23 262 284 262 284 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF169-202 - 603 1.9e-62 204.4 95.4 4 13 1.3e-06 0.00089 19.6 3.8 1 23 290 312 290 312 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF169-202 - 603 1.9e-62 204.4 95.4 5 13 5.1e-07 0.00034 20.9 0.2 1 23 318 340 318 340 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF169-202 - 603 1.9e-62 204.4 95.4 6 13 4.3e-07 0.00029 21.1 0.8 1 23 346 368 346 368 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF169-202 - 603 1.9e-62 204.4 95.4 7 13 4.3e-07 0.00029 21.1 0.5 2 23 375 396 374 396 0.94 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF169-202 - 603 1.9e-62 204.4 95.4 8 13 6.6e-08 4.4e-05 23.7 1.5 1 23 402 424 402 424 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF169-202 - 603 1.9e-62 204.4 95.4 9 13 1.5e-06 0.00099 19.4 0.2 1 23 430 452 430 452 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF169-202 - 603 1.9e-62 204.4 95.4 10 13 1.3e-07 8.8e-05 22.8 0.2 1 23 458 480 458 480 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF169-202 - 603 1.9e-62 204.4 95.4 11 13 6e-08 4e-05 23.8 1.0 1 23 486 508 486 508 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF169-202 - 603 1.9e-62 204.4 95.4 12 13 1.1e-06 0.00075 19.8 0.8 2 23 543 564 542 564 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF169-202 - 603 1.9e-62 204.4 95.4 13 13 2.9e-07 0.0002 21.7 3.8 1 22 570 591 570 595 0.94 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZNF169-202 - 603 3.3e-40 133.2 89.8 1 13 5 3.3e+03 -0.5 0.6 12 23 223 234 221 235 0.72 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF169-202 - 603 3.3e-40 133.2 89.8 2 13 9.8e-06 0.0065 17.2 2.2 1 23 234 256 234 257 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF169-202 - 603 3.3e-40 133.2 89.8 3 13 1.7e-06 0.0011 19.6 0.7 1 23 262 284 262 285 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF169-202 - 603 3.3e-40 133.2 89.8 4 13 0.00025 0.17 12.8 2.5 1 23 290 312 290 313 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF169-202 - 603 3.3e-40 133.2 89.8 5 13 0.00019 0.12 13.2 0.2 1 23 318 340 318 341 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF169-202 - 603 3.3e-40 133.2 89.8 6 13 7.9e-06 0.0053 17.5 1.4 1 23 346 368 346 369 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF169-202 - 603 3.3e-40 133.2 89.8 7 13 0.00016 0.11 13.4 0.8 1 23 374 396 374 397 0.91 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF169-202 - 603 3.3e-40 133.2 89.8 8 13 0.00015 0.1 13.5 1.3 1 23 402 424 402 425 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF169-202 - 603 3.3e-40 133.2 89.8 9 13 2.3e-06 0.0015 19.2 0.2 1 23 430 452 430 453 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF169-202 - 603 3.3e-40 133.2 89.8 10 13 7.2e-06 0.0048 17.6 0.1 1 23 458 480 458 481 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF169-202 - 603 3.3e-40 133.2 89.8 11 13 3.3e-05 0.022 15.6 0.8 1 23 486 508 486 509 0.89 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF169-202 - 603 3.3e-40 133.2 89.8 12 13 3.2e-05 0.021 15.6 0.7 2 23 543 564 542 565 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF169-202 - 603 3.3e-40 133.2 89.8 13 13 3e-05 0.02 15.7 2.6 1 22 570 591 570 593 0.93 C2H2-type zinc finger KRAB PF01352.27 42 ZNF169-202 - 603 2.5e-23 81.5 0.1 1 1 7.4e-26 4.9e-23 80.5 0.1 2 42 14 54 13 54 0.98 KRAB box Zn-ribbon_8 PF09723.10 40 ZNF169-202 - 603 3.1e-11 43.2 55.4 1 12 0.099 66 3.7 1.3 25 34 232 241 224 247 0.69 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF169-202 - 603 3.1e-11 43.2 55.4 2 12 0.0025 1.7 8.9 5.3 7 35 235 270 233 275 0.88 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF169-202 - 603 3.1e-11 43.2 55.4 3 12 0.00045 0.3 11.2 3.6 6 35 262 298 261 302 0.83 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF169-202 - 603 3.1e-11 43.2 55.4 4 12 0.03 20 5.4 0.5 6 16 290 300 288 312 0.84 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF169-202 - 603 3.1e-11 43.2 55.4 5 12 2e-05 0.013 15.6 1.3 6 34 318 353 317 360 0.85 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF169-202 - 603 3.1e-11 43.2 55.4 6 12 0.051 34 4.7 3.8 6 38 346 385 346 387 0.84 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF169-202 - 603 3.1e-11 43.2 55.4 7 12 0.43 2.9e+02 1.7 0.2 6 16 374 384 372 392 0.83 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF169-202 - 603 3.1e-11 43.2 55.4 8 12 6.9e-07 0.00046 20.2 1.4 6 35 402 439 401 444 0.86 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF169-202 - 603 3.1e-11 43.2 55.4 9 12 6.4e-05 0.042 14.0 0.9 6 34 458 493 449 495 0.92 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF169-202 - 603 3.1e-11 43.2 55.4 10 12 0.81 5.4e+02 0.8 0.8 25 34 539 549 532 555 0.66 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF169-202 - 603 3.1e-11 43.2 55.4 11 12 0.11 72 3.6 5.2 8 34 544 577 540 583 0.80 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF169-202 - 603 3.1e-11 43.2 55.4 12 12 0.022 14 5.9 0.3 6 17 570 581 569 591 0.80 Zinc ribbon domain ADK_lid PF05191.14 36 ZNF169-202 - 603 4e-09 36.3 42.5 1 13 0.0095 6.3 6.9 0.5 20 36 232 248 229 248 0.83 Adenylate kinase, active site lid ADK_lid PF05191.14 36 ZNF169-202 - 603 4e-09 36.3 42.5 2 13 0.0026 1.7 8.7 2.8 3 33 235 273 234 275 0.81 Adenylate kinase, active site lid ADK_lid PF05191.14 36 ZNF169-202 - 603 4e-09 36.3 42.5 3 13 0.0082 5.4 7.1 1.7 3 29 263 297 262 300 0.71 Adenylate kinase, active site lid ADK_lid PF05191.14 36 ZNF169-202 - 603 4e-09 36.3 42.5 4 13 0.023 15 5.6 2.0 3 29 291 325 290 330 0.72 Adenylate kinase, active site lid ADK_lid PF05191.14 36 ZNF169-202 - 603 4e-09 36.3 42.5 5 13 0.0015 1 9.4 0.4 3 32 319 356 318 359 0.77 Adenylate kinase, active site lid ADK_lid PF05191.14 36 ZNF169-202 - 603 4e-09 36.3 42.5 6 13 0.052 34 4.5 0.2 3 11 347 355 346 366 0.86 Adenylate kinase, active site lid ADK_lid PF05191.14 36 ZNF169-202 - 603 4e-09 36.3 42.5 7 13 0.0008 0.53 10.3 0.1 3 32 375 412 374 415 0.84 Adenylate kinase, active site lid ADK_lid PF05191.14 36 ZNF169-202 - 603 4e-09 36.3 42.5 8 13 0.0014 0.96 9.5 0.5 3 29 431 465 430 470 0.72 Adenylate kinase, active site lid ADK_lid PF05191.14 36 ZNF169-202 - 603 4e-09 36.3 42.5 9 13 0.088 58 3.8 0.1 3 11 459 467 457 481 0.83 Adenylate kinase, active site lid ADK_lid PF05191.14 36 ZNF169-202 - 603 4e-09 36.3 42.5 10 13 0.0053 3.5 7.7 0.1 3 33 487 525 486 527 0.69 Adenylate kinase, active site lid ADK_lid PF05191.14 36 ZNF169-202 - 603 4e-09 36.3 42.5 11 13 0.3 2e+02 2.1 1.0 22 28 542 548 534 551 0.77 Adenylate kinase, active site lid ADK_lid PF05191.14 36 ZNF169-202 - 603 4e-09 36.3 42.5 12 13 0.052 35 4.5 3.7 3 33 543 581 542 583 0.74 Adenylate kinase, active site lid ADK_lid PF05191.14 36 ZNF169-202 - 603 4e-09 36.3 42.5 13 13 0.04 26 4.9 0.2 3 12 571 580 569 595 0.81 Adenylate kinase, active site lid Zn_ribbon_SprT PF17283.2 38 ZNF169-202 - 603 2.9e-08 33.5 50.3 1 8 0.051 34 4.5 4.6 5 37 234 274 233 275 0.72 SprT-like zinc ribbon domain Zn_ribbon_SprT PF17283.2 38 ZNF169-202 - 603 2.9e-08 33.5 50.3 2 8 0.0015 0.99 9.4 5.4 5 37 290 330 289 331 0.94 SprT-like zinc ribbon domain Zn_ribbon_SprT PF17283.2 38 ZNF169-202 - 603 2.9e-08 33.5 50.3 3 8 0.69 4.6e+02 0.8 0.1 6 12 347 353 346 355 0.82 SprT-like zinc ribbon domain Zn_ribbon_SprT PF17283.2 38 ZNF169-202 - 603 2.9e-08 33.5 50.3 4 8 0.13 89 3.1 0.4 7 37 376 414 375 415 0.63 SprT-like zinc ribbon domain Zn_ribbon_SprT PF17283.2 38 ZNF169-202 - 603 2.9e-08 33.5 50.3 5 8 0.0027 1.8 8.5 1.7 5 36 402 441 401 443 0.71 SprT-like zinc ribbon domain Zn_ribbon_SprT PF17283.2 38 ZNF169-202 - 603 2.9e-08 33.5 50.3 6 8 1.6e-05 0.011 15.7 1.0 5 37 458 498 457 499 0.89 SprT-like zinc ribbon domain Zn_ribbon_SprT PF17283.2 38 ZNF169-202 - 603 2.9e-08 33.5 50.3 7 8 1.4e-06 0.00093 19.1 0.0 5 37 486 526 485 527 0.95 SprT-like zinc ribbon domain Zn_ribbon_SprT PF17283.2 38 ZNF169-202 - 603 2.9e-08 33.5 50.3 8 8 0.011 7 6.6 2.4 7 37 544 582 543 583 0.79 SprT-like zinc ribbon domain FYDLN_acid PF09538.10 106 ZNF169-202 - 603 1.9e-07 31.7 24.3 1 11 0.039 26 5.6 1.6 11 44 235 279 231 288 0.59 Protein of unknown function (FYDLN_acid) FYDLN_acid PF09538.10 106 ZNF169-202 - 603 1.9e-07 31.7 24.3 2 11 0.24 1.6e+02 3.0 0.5 24 41 287 304 263 317 0.55 Protein of unknown function (FYDLN_acid) FYDLN_acid PF09538.10 106 ZNF169-202 - 603 1.9e-07 31.7 24.3 3 11 0.27 1.8e+02 2.9 0.1 25 46 288 309 283 341 0.69 Protein of unknown function (FYDLN_acid) FYDLN_acid PF09538.10 106 ZNF169-202 - 603 1.9e-07 31.7 24.3 4 11 0.021 14 6.4 0.3 22 41 341 360 320 372 0.84 Protein of unknown function (FYDLN_acid) FYDLN_acid PF09538.10 106 ZNF169-202 - 603 1.9e-07 31.7 24.3 5 11 0.25 1.7e+02 3.0 0.0 24 47 371 394 369 400 0.79 Protein of unknown function (FYDLN_acid) FYDLN_acid PF09538.10 106 ZNF169-202 - 603 1.9e-07 31.7 24.3 6 11 0.12 76 4.0 0.0 24 42 399 417 397 428 0.73 Protein of unknown function (FYDLN_acid) FYDLN_acid PF09538.10 106 ZNF169-202 - 603 1.9e-07 31.7 24.3 7 11 0.22 1.5e+02 3.1 0.1 24 41 427 444 424 456 0.77 Protein of unknown function (FYDLN_acid) FYDLN_acid PF09538.10 106 ZNF169-202 - 603 1.9e-07 31.7 24.3 8 11 0.44 2.9e+02 2.2 0.0 24 41 455 472 452 484 0.72 Protein of unknown function (FYDLN_acid) FYDLN_acid PF09538.10 106 ZNF169-202 - 603 1.9e-07 31.7 24.3 9 11 0.0081 5.4 7.8 0.0 24 51 483 510 480 518 0.72 Protein of unknown function (FYDLN_acid) FYDLN_acid PF09538.10 106 ZNF169-202 - 603 1.9e-07 31.7 24.3 10 11 1.8 1.2e+03 0.2 0.1 25 42 540 557 538 569 0.71 Protein of unknown function (FYDLN_acid) FYDLN_acid PF09538.10 106 ZNF169-202 - 603 1.9e-07 31.7 24.3 11 11 0.28 1.9e+02 2.8 0.0 24 46 567 590 564 600 0.75 Protein of unknown function (FYDLN_acid) DZR PF12773.7 49 ZNF169-202 - 603 4.1e-07 29.9 45.9 1 1 0.01 6.8 6.8 1.6 12 40 541 581 519 585 0.79 Double zinc ribbon DUF3268 PF11672.8 118 ZNF169-202 - 603 5.3e-07 30.0 30.8 1 10 0.0011 0.74 10.2 0.6 3 38 234 269 232 279 0.77 zinc-finger-containing domain DUF3268 PF11672.8 118 ZNF169-202 - 603 5.3e-07 30.0 30.8 2 10 1.6e-05 0.011 16.1 0.7 2 42 261 301 260 314 0.90 zinc-finger-containing domain DUF3268 PF11672.8 118 ZNF169-202 - 603 5.3e-07 30.0 30.8 3 10 0.0045 3 8.2 0.6 2 37 289 324 288 341 0.90 zinc-finger-containing domain DUF3268 PF11672.8 118 ZNF169-202 - 603 5.3e-07 30.0 30.8 4 10 0.061 41 4.5 0.5 3 37 318 352 316 360 0.88 zinc-finger-containing domain DUF3268 PF11672.8 118 ZNF169-202 - 603 5.3e-07 30.0 30.8 5 10 0.048 32 4.9 0.2 2 41 345 384 344 389 0.73 zinc-finger-containing domain DUF3268 PF11672.8 118 ZNF169-202 - 603 5.3e-07 30.0 30.8 6 10 0.067 44 4.4 0.2 4 41 375 412 372 427 0.74 zinc-finger-containing domain DUF3268 PF11672.8 118 ZNF169-202 - 603 5.3e-07 30.0 30.8 7 10 0.014 9.3 6.6 0.8 2 37 401 436 400 444 0.75 zinc-finger-containing domain DUF3268 PF11672.8 118 ZNF169-202 - 603 5.3e-07 30.0 30.8 8 10 0.011 7.6 6.9 0.3 3 38 430 465 428 471 0.74 zinc-finger-containing domain DUF3268 PF11672.8 118 ZNF169-202 - 603 5.3e-07 30.0 30.8 9 10 0.0075 5 7.5 0.2 3 42 458 497 456 518 0.75 zinc-finger-containing domain DUF3268 PF11672.8 118 ZNF169-202 - 603 5.3e-07 30.0 30.8 10 10 0.0037 2.4 8.5 0.5 2 37 541 576 540 594 0.83 zinc-finger-containing domain # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF169-202.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF169-202.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF169-202.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF169-202.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF169-202.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:00:40 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- KRAB PF01352.27 42 ZNF169-203 - 111 1.9e-24 85.0 0.1 1 1 1.9e-28 3.3e-24 84.2 0.1 2 42 14 54 13 54 0.98 KRAB box # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF169-203.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF169-203.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF169-203.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF169-203.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF169-203.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:00:41 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- KRAB PF01352.27 42 ZNF169-204 - 126 3e-24 84.4 1.5 1 2 2.4e-28 4.4e-24 83.9 0.1 2 42 14 54 13 54 0.98 KRAB box KRAB PF01352.27 42 ZNF169-204 - 126 3e-24 84.4 1.5 2 2 0.079 1.4e+03 -1.0 0.1 10 19 82 91 75 93 0.78 KRAB box # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF169-204.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF169-204.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF169-204.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF169-204.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF169-204.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:00:41 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- KRAB PF01352.27 42 ZNF169-205 - 79 1.2e-24 85.7 0.1 1 1 8.3e-29 1.5e-24 85.4 0.1 1 42 13 54 13 54 0.98 KRAB box # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF169-205.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF169-205.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF169-205.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF169-205.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF169-205.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:00:42 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZNF17-201 - 664 6.5e-118 380.4 141.3 1 19 0.83 1.1e+03 0.4 0.3 5 13 118 126 114 159 0.49 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF17-201 - 664 6.5e-118 380.4 141.3 2 19 0.018 23 5.6 0.6 9 24 186 201 176 202 0.80 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF17-201 - 664 6.5e-118 380.4 141.3 3 19 3.1e-08 4e-05 23.8 1.2 4 24 209 229 207 231 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF17-201 - 664 6.5e-118 380.4 141.3 4 19 1.1e-11 1.4e-08 34.8 0.4 2 25 235 258 234 258 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF17-201 - 664 6.5e-118 380.4 141.3 5 19 2.5e-11 3.1e-08 33.7 0.1 2 25 263 286 262 287 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF17-201 - 664 6.5e-118 380.4 141.3 6 19 1.9e-09 2.4e-06 27.7 0.6 1 26 290 315 290 315 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF17-201 - 664 6.5e-118 380.4 141.3 7 19 1.1e-07 0.00014 22.1 0.9 1 24 318 341 318 341 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF17-201 - 664 6.5e-118 380.4 141.3 8 19 4.9e-08 6.3e-05 23.2 2.3 1 24 346 369 346 369 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF17-201 - 664 6.5e-118 380.4 141.3 9 19 2.4e-10 3.1e-07 30.5 0.6 5 25 378 398 375 399 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF17-201 - 664 6.5e-118 380.4 141.3 10 19 2e-11 2.5e-08 33.9 1.0 2 24 403 425 402 425 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF17-201 - 664 6.5e-118 380.4 141.3 11 19 2.1e-10 2.6e-07 30.7 1.0 5 25 434 454 431 455 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF17-201 - 664 6.5e-118 380.4 141.3 12 19 9.9e-12 1.3e-08 34.9 0.3 2 25 459 482 458 483 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF17-201 - 664 6.5e-118 380.4 141.3 13 19 6.8e-11 8.7e-08 32.3 1.7 2 25 487 510 486 511 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF17-201 - 664 6.5e-118 380.4 141.3 14 19 1.5e-10 1.9e-07 31.2 1.5 2 26 515 539 514 539 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF17-201 - 664 6.5e-118 380.4 141.3 15 19 3.7e-07 0.00047 20.5 0.5 4 25 545 566 544 567 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF17-201 - 664 6.5e-118 380.4 141.3 16 19 8.2e-08 0.00011 22.5 4.4 1 24 570 593 570 593 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF17-201 - 664 6.5e-118 380.4 141.3 17 19 2.2e-11 2.8e-08 33.8 0.5 3 25 600 622 599 623 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF17-201 - 664 6.5e-118 380.4 141.3 18 19 9.4e-11 1.2e-07 31.8 0.1 2 25 627 650 626 651 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF17-201 - 664 6.5e-118 380.4 141.3 19 19 1.8 2.4e+03 -0.7 1.3 1 10 654 663 654 664 0.87 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZNF17-201 - 664 1.4e-76 248.9 157.3 1 18 7.4 9.5e+03 -2.6 0.4 12 23 111 122 110 122 0.82 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF17-201 - 664 1.4e-76 248.9 157.3 2 18 4.6e-05 0.059 13.9 7.4 1 23 192 214 192 214 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF17-201 - 664 1.4e-76 248.9 157.3 3 18 4.3e-08 5.5e-05 23.4 0.8 1 23 220 242 220 242 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF17-201 - 664 1.4e-76 248.9 157.3 4 18 2.7e-07 0.00034 20.9 0.5 1 23 248 270 248 270 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF17-201 - 664 1.4e-76 248.9 157.3 5 18 2e-07 0.00025 21.3 1.4 1 23 276 298 276 298 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF17-201 - 664 1.4e-76 248.9 157.3 6 18 2.7e-06 0.0034 17.7 0.2 1 23 304 326 304 326 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF17-201 - 664 1.4e-76 248.9 157.3 7 18 2.8e-06 0.0036 17.7 0.3 3 23 334 354 332 354 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF17-201 - 664 1.4e-76 248.9 157.3 8 18 0.00012 0.15 12.6 4.4 1 23 360 382 360 382 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF17-201 - 664 1.4e-76 248.9 157.3 9 18 2.9e-08 3.7e-05 23.9 1.6 1 23 388 410 388 410 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF17-201 - 664 1.4e-76 248.9 157.3 10 18 3.8e-07 0.00048 20.4 0.3 1 23 416 438 416 438 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF17-201 - 664 1.4e-76 248.9 157.3 11 18 1.5e-06 0.0019 18.5 5.7 1 23 444 466 444 466 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF17-201 - 664 1.4e-76 248.9 157.3 12 18 3.6e-07 0.00046 20.5 2.4 1 23 472 494 472 494 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF17-201 - 664 1.4e-76 248.9 157.3 13 18 8.1e-06 0.01 16.2 2.8 1 23 500 522 500 522 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF17-201 - 664 1.4e-76 248.9 157.3 14 18 4.3e-05 0.055 14.0 6.1 1 23 528 550 528 550 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF17-201 - 664 1.4e-76 248.9 157.3 15 18 2e-09 2.5e-06 27.6 1.4 1 23 556 578 556 578 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF17-201 - 664 1.4e-76 248.9 157.3 16 18 3.6e-07 0.00046 20.5 1.3 1 23 584 606 584 606 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF17-201 - 664 1.4e-76 248.9 157.3 17 18 4.5e-09 5.7e-06 26.5 0.8 1 23 612 634 612 634 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF17-201 - 664 1.4e-76 248.9 157.3 18 18 3.9e-09 5e-06 26.7 1.3 1 23 640 662 640 662 0.99 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZNF17-201 - 664 2.5e-45 149.2 150.6 1 17 0.0021 2.7 9.1 6.1 1 23 192 214 192 215 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF17-201 - 664 2.5e-45 149.2 150.6 2 17 1.2e-05 0.015 16.1 0.5 1 23 220 242 220 243 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF17-201 - 664 2.5e-45 149.2 150.6 3 17 3.7e-05 0.048 14.5 0.7 1 23 248 270 248 271 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF17-201 - 664 2.5e-45 149.2 150.6 4 17 7e-06 0.0089 16.8 1.4 1 23 276 298 276 299 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF17-201 - 664 2.5e-45 149.2 150.6 5 17 3e-05 0.038 14.8 0.4 1 23 304 326 304 327 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF17-201 - 664 2.5e-45 149.2 150.6 6 17 5.1e-05 0.065 14.1 0.4 2 23 333 354 332 355 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF17-201 - 664 2.5e-45 149.2 150.6 7 17 0.0014 1.8 9.6 4.2 1 23 360 382 360 383 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF17-201 - 664 2.5e-45 149.2 150.6 8 17 4.9e-05 0.062 14.2 1.1 1 23 388 410 388 411 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF17-201 - 664 2.5e-45 149.2 150.6 9 17 0.00021 0.27 12.2 0.3 1 23 416 438 416 439 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF17-201 - 664 2.5e-45 149.2 150.6 10 17 0.00047 0.6 11.1 4.5 1 23 444 466 444 467 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF17-201 - 664 2.5e-45 149.2 150.6 11 17 5.3e-05 0.068 14.0 2.6 1 23 472 494 472 495 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF17-201 - 664 2.5e-45 149.2 150.6 12 17 1.5e-06 0.0019 18.9 2.2 1 23 500 522 500 523 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF17-201 - 664 2.5e-45 149.2 150.6 13 17 0.0086 11 7.2 4.7 1 23 528 550 528 551 0.90 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF17-201 - 664 2.5e-45 149.2 150.6 14 17 1.1e-06 0.0015 19.2 1.4 1 23 556 578 556 579 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF17-201 - 664 2.5e-45 149.2 150.6 15 17 4.2e-05 0.054 14.4 1.1 1 23 584 606 584 607 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF17-201 - 664 2.5e-45 149.2 150.6 16 17 4.4e-06 0.0056 17.4 0.6 1 23 612 634 612 635 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF17-201 - 664 2.5e-45 149.2 150.6 17 17 3.8e-06 0.0048 17.6 1.2 1 23 640 662 640 663 0.95 C2H2-type zinc finger KRAB PF01352.27 42 ZNF17-201 - 664 1.1e-18 66.5 0.2 1 1 1.6e-21 2e-18 65.7 0.2 2 42 10 50 9 50 0.98 KRAB box zf-C2H2_6 PF13912.6 27 ZNF17-201 - 664 2.1e-13 49.9 146.9 1 17 5.6 7.1e+03 -2.8 0.0 10 16 184 190 183 190 0.84 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF17-201 - 664 2.1e-13 49.9 146.9 2 17 0.6 7.7e+02 0.3 6.0 2 24 192 214 192 217 0.83 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF17-201 - 664 2.1e-13 49.9 146.9 3 17 3.2e-07 0.00041 20.3 0.7 2 24 220 242 220 245 0.95 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF17-201 - 664 2.1e-13 49.9 146.9 4 17 0.00084 1.1 9.4 0.5 2 12 248 258 248 259 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF17-201 - 664 2.1e-13 49.9 146.9 5 17 0.0012 1.6 8.8 0.4 2 11 276 285 276 286 0.96 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF17-201 - 664 2.1e-13 49.9 146.9 6 17 6.1e-05 0.079 13.0 0.8 2 24 304 326 304 329 0.92 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF17-201 - 664 2.1e-13 49.9 146.9 7 17 0.0024 3 7.9 0.7 2 24 332 354 332 357 0.90 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF17-201 - 664 2.1e-13 49.9 146.9 8 17 0.0018 2.3 8.3 0.8 2 20 388 406 388 412 0.78 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF17-201 - 664 2.1e-13 49.9 146.9 9 17 0.019 24 5.1 1.9 2 11 416 425 416 425 0.89 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF17-201 - 664 2.1e-13 49.9 146.9 10 17 0.056 71 3.6 3.4 2 20 444 462 444 469 0.77 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF17-201 - 664 2.1e-13 49.9 146.9 11 17 0.011 15 5.8 1.6 2 11 472 481 472 482 0.90 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF17-201 - 664 2.1e-13 49.9 146.9 12 17 0.0011 1.4 9.0 3.2 2 12 500 510 500 511 0.95 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF17-201 - 664 2.1e-13 49.9 146.9 13 17 0.0058 7.4 6.7 1.5 2 12 528 538 528 550 0.87 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF17-201 - 664 2.1e-13 49.9 146.9 14 17 0.00037 0.48 10.5 0.8 2 12 556 566 555 580 0.83 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF17-201 - 664 2.1e-13 49.9 146.9 15 17 0.037 47 4.1 0.9 2 11 584 593 583 594 0.87 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF17-201 - 664 2.1e-13 49.9 146.9 16 17 4.7e-08 6.1e-05 22.9 0.5 2 24 612 634 612 637 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF17-201 - 664 2.1e-13 49.9 146.9 17 17 0.0041 5.3 7.2 2.3 2 12 640 650 640 662 0.79 C2H2-type zinc finger Zn-ribbon_8 PF09723.10 40 ZNF17-201 - 664 2.3e-11 43.6 99.0 1 13 1.1 1.4e+03 -0.5 0.1 25 34 84 93 72 98 0.70 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF17-201 - 664 2.3e-11 43.6 99.0 2 13 0.00026 0.34 11.1 5.7 6 34 192 227 191 231 0.88 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF17-201 - 664 2.3e-11 43.6 99.0 3 13 4.8e-06 0.0062 16.6 2.4 6 36 248 285 247 289 0.88 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF17-201 - 664 2.3e-11 43.6 99.0 4 13 3.5e-05 0.045 13.9 2.4 6 34 276 311 275 317 0.91 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF17-201 - 664 2.3e-11 43.6 99.0 5 13 0.0014 1.8 8.7 2.9 6 34 304 339 303 340 0.93 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF17-201 - 664 2.3e-11 43.6 99.0 6 13 0.01 13 6.0 3.6 6 34 332 367 331 370 0.91 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF17-201 - 664 2.3e-11 43.6 99.0 7 13 0.021 26 5.0 10.6 6 34 388 423 387 454 0.78 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF17-201 - 664 2.3e-11 43.6 99.0 8 13 0.0071 9.1 6.5 7.1 6 34 444 479 443 483 0.90 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF17-201 - 664 2.3e-11 43.6 99.0 9 13 0.063 81 3.5 5.1 6 35 472 508 471 510 0.82 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF17-201 - 664 2.3e-11 43.6 99.0 10 13 0.016 20 5.4 5.8 6 34 500 535 499 539 0.89 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF17-201 - 664 2.3e-11 43.6 99.0 11 13 1.3e-05 0.017 15.2 1.8 6 34 556 591 555 595 0.92 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF17-201 - 664 2.3e-11 43.6 99.0 12 13 0.00028 0.36 11.0 4.4 6 34 612 647 611 650 0.91 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF17-201 - 664 2.3e-11 43.6 99.0 13 13 0.0037 4.7 7.4 0.4 6 17 640 651 639 661 0.82 Zinc ribbon domain zf_UBZ PF18439.1 32 ZNF17-201 - 664 5.5e-07 29.1 92.4 1 18 0.32 4.1e+02 0.7 0.3 3 21 86 105 84 105 0.84 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF17-201 - 664 5.5e-07 29.1 92.4 2 18 0.054 69 3.2 2.4 1 20 190 210 190 211 0.73 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF17-201 - 664 5.5e-07 29.1 92.4 3 18 0.013 17 5.1 0.1 3 12 220 229 218 239 0.78 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF17-201 - 664 5.5e-07 29.1 92.4 4 18 0.0024 3.1 7.5 0.1 3 16 248 262 246 267 0.77 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF17-201 - 664 5.5e-07 29.1 92.4 5 18 0.0035 4.4 7.0 0.2 3 20 276 294 274 295 0.79 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF17-201 - 664 5.5e-07 29.1 92.4 6 18 0.0016 2.1 8.0 0.0 3 14 304 315 302 320 0.86 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF17-201 - 664 5.5e-07 29.1 92.4 7 18 0.17 2.1e+02 1.6 0.0 3 12 332 341 331 351 0.83 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF17-201 - 664 5.5e-07 29.1 92.4 8 18 2.1 2.7e+03 -2.0 2.1 3 12 360 369 359 376 0.85 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF17-201 - 664 5.5e-07 29.1 92.4 9 18 0.11 1.4e+02 2.2 0.4 3 12 388 397 386 398 0.86 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF17-201 - 664 5.5e-07 29.1 92.4 10 18 0.01 13 5.5 0.1 3 12 416 425 414 434 0.85 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF17-201 - 664 5.5e-07 29.1 92.4 11 18 0.13 1.7e+02 1.9 0.4 3 12 444 453 442 454 0.86 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF17-201 - 664 5.5e-07 29.1 92.4 12 18 0.002 2.6 7.7 0.7 3 21 472 491 470 491 0.90 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF17-201 - 664 5.5e-07 29.1 92.4 13 18 0.022 28 4.4 0.6 3 21 500 519 499 519 0.85 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF17-201 - 664 5.5e-07 29.1 92.4 14 18 0.012 15 5.2 0.2 3 12 528 537 526 542 0.85 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF17-201 - 664 5.5e-07 29.1 92.4 15 18 0.013 17 5.1 0.2 2 15 555 568 554 575 0.83 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF17-201 - 664 5.5e-07 29.1 92.4 16 18 0.00054 0.69 9.6 0.1 2 21 583 603 582 603 0.85 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF17-201 - 664 5.5e-07 29.1 92.4 17 18 0.01 13 5.4 0.1 3 12 612 621 610 627 0.89 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF17-201 - 664 5.5e-07 29.1 92.4 18 18 0.0046 5.9 6.6 0.3 3 20 640 658 638 659 0.79 Ubiquitin-Binding Zinc Finger # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF17-201.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF17-201.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF17-201.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF17-201.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF17-201.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:00:42 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF17-202.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF17-202.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF17-202.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF17-202.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF17-202.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:00:43 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF17-203.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF17-203.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF17-203.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF17-203.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF17-203.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:00:43 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF17-204.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF17-204.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF17-204.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF17-204.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF17-204.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:00:44 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF17-205.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF17-205.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF17-205.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF17-205.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF17-205.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:00:44 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZNF17-206 - 662 6.1e-118 380.5 141.3 1 19 0.89 1.1e+03 0.4 0.3 5 13 116 124 112 157 0.49 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF17-206 - 662 6.1e-118 380.5 141.3 2 19 0.02 23 5.6 0.6 9 24 184 199 174 200 0.80 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF17-206 - 662 6.1e-118 380.5 141.3 3 19 3.3e-08 4e-05 23.9 1.2 4 24 207 227 205 229 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF17-206 - 662 6.1e-118 380.5 141.3 4 19 1.1e-11 1.4e-08 34.8 0.4 2 25 233 256 232 256 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF17-206 - 662 6.1e-118 380.5 141.3 5 19 2.6e-11 3.1e-08 33.7 0.1 2 25 261 284 260 285 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF17-206 - 662 6.1e-118 380.5 141.3 6 19 2e-09 2.4e-06 27.7 0.6 1 26 288 313 288 313 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF17-206 - 662 6.1e-118 380.5 141.3 7 19 1.2e-07 0.00014 22.1 0.9 1 24 316 339 316 339 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF17-206 - 662 6.1e-118 380.5 141.3 8 19 5.2e-08 6.3e-05 23.2 2.3 1 24 344 367 344 367 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF17-206 - 662 6.1e-118 380.5 141.3 9 19 2.6e-10 3.1e-07 30.5 0.6 5 25 376 396 373 397 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF17-206 - 662 6.1e-118 380.5 141.3 10 19 2.1e-11 2.5e-08 34.0 1.0 2 24 401 423 400 423 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF17-206 - 662 6.1e-118 380.5 141.3 11 19 2.2e-10 2.6e-07 30.7 1.0 5 25 432 452 429 453 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF17-206 - 662 6.1e-118 380.5 141.3 12 19 1.1e-11 1.3e-08 34.9 0.3 2 25 457 480 456 481 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF17-206 - 662 6.1e-118 380.5 141.3 13 19 7.3e-11 8.7e-08 32.3 1.7 2 25 485 508 484 509 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF17-206 - 662 6.1e-118 380.5 141.3 14 19 1.6e-10 1.9e-07 31.2 1.5 2 26 513 537 512 537 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF17-206 - 662 6.1e-118 380.5 141.3 15 19 3.9e-07 0.00047 20.5 0.5 4 25 543 564 542 565 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF17-206 - 662 6.1e-118 380.5 141.3 16 19 8.8e-08 0.0001 22.5 4.4 1 24 568 591 568 591 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF17-206 - 662 6.1e-118 380.5 141.3 17 19 2.4e-11 2.8e-08 33.8 0.5 3 25 598 620 597 621 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF17-206 - 662 6.1e-118 380.5 141.3 18 19 1e-10 1.2e-07 31.8 0.1 2 25 625 648 624 649 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF17-206 - 662 6.1e-118 380.5 141.3 19 19 2 2.4e+03 -0.7 1.3 1 10 652 661 652 662 0.87 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZNF17-206 - 662 1.3e-76 249.0 157.3 1 18 7.9 9.5e+03 -2.5 0.4 12 23 109 120 108 120 0.82 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF17-206 - 662 1.3e-76 249.0 157.3 2 18 4.9e-05 0.058 13.9 7.4 1 23 190 212 190 212 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF17-206 - 662 1.3e-76 249.0 157.3 3 18 4.6e-08 5.5e-05 23.4 0.8 1 23 218 240 218 240 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF17-206 - 662 1.3e-76 249.0 157.3 4 18 2.8e-07 0.00034 20.9 0.5 1 23 246 268 246 268 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF17-206 - 662 1.3e-76 249.0 157.3 5 18 2.1e-07 0.00025 21.3 1.4 1 23 274 296 274 296 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF17-206 - 662 1.3e-76 249.0 157.3 6 18 2.8e-06 0.0034 17.8 0.2 1 23 302 324 302 324 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF17-206 - 662 1.3e-76 249.0 157.3 7 18 3e-06 0.0036 17.7 0.3 3 23 332 352 330 352 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF17-206 - 662 1.3e-76 249.0 157.3 8 18 0.00013 0.15 12.6 4.4 1 23 358 380 358 380 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF17-206 - 662 1.3e-76 249.0 157.3 9 18 3.1e-08 3.7e-05 23.9 1.6 1 23 386 408 386 408 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF17-206 - 662 1.3e-76 249.0 157.3 10 18 4e-07 0.00048 20.4 0.3 1 23 414 436 414 436 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF17-206 - 662 1.3e-76 249.0 157.3 11 18 1.6e-06 0.0019 18.6 5.7 1 23 442 464 442 464 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF17-206 - 662 1.3e-76 249.0 157.3 12 18 3.8e-07 0.00045 20.5 2.4 1 23 470 492 470 492 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF17-206 - 662 1.3e-76 249.0 157.3 13 18 8.6e-06 0.01 16.2 2.8 1 23 498 520 498 520 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF17-206 - 662 1.3e-76 249.0 157.3 14 18 4.5e-05 0.054 14.0 6.1 1 23 526 548 526 548 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF17-206 - 662 1.3e-76 249.0 157.3 15 18 2.1e-09 2.5e-06 27.6 1.4 1 23 554 576 554 576 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF17-206 - 662 1.3e-76 249.0 157.3 16 18 3.9e-07 0.00046 20.5 1.3 1 23 582 604 582 604 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF17-206 - 662 1.3e-76 249.0 157.3 17 18 4.8e-09 5.7e-06 26.5 0.8 1 23 610 632 610 632 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF17-206 - 662 1.3e-76 249.0 157.3 18 18 4.1e-09 4.9e-06 26.7 1.3 1 23 638 660 638 660 0.99 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZNF17-206 - 662 2.4e-45 149.3 150.6 1 17 0.0023 2.7 9.1 6.1 1 23 190 212 190 213 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF17-206 - 662 2.4e-45 149.3 150.6 2 17 1.2e-05 0.015 16.1 0.5 1 23 218 240 218 241 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF17-206 - 662 2.4e-45 149.3 150.6 3 17 4e-05 0.048 14.5 0.7 1 23 246 268 246 269 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF17-206 - 662 2.4e-45 149.3 150.6 4 17 7.4e-06 0.0089 16.8 1.4 1 23 274 296 274 297 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF17-206 - 662 2.4e-45 149.3 150.6 5 17 3.2e-05 0.038 14.8 0.4 1 23 302 324 302 325 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF17-206 - 662 2.4e-45 149.3 150.6 6 17 5.4e-05 0.065 14.1 0.4 2 23 331 352 330 353 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF17-206 - 662 2.4e-45 149.3 150.6 7 17 0.0015 1.8 9.6 4.2 1 23 358 380 358 381 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF17-206 - 662 2.4e-45 149.3 150.6 8 17 5.2e-05 0.062 14.2 1.1 1 23 386 408 386 409 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF17-206 - 662 2.4e-45 149.3 150.6 9 17 0.00022 0.27 12.2 0.3 1 23 414 436 414 437 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF17-206 - 662 2.4e-45 149.3 150.6 10 17 0.0005 0.6 11.1 4.5 1 23 442 464 442 465 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF17-206 - 662 2.4e-45 149.3 150.6 11 17 5.6e-05 0.068 14.1 2.6 1 23 470 492 470 493 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF17-206 - 662 2.4e-45 149.3 150.6 12 17 1.6e-06 0.0019 18.9 2.2 1 23 498 520 498 521 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF17-206 - 662 2.4e-45 149.3 150.6 13 17 0.0092 11 7.2 4.7 1 23 526 548 526 549 0.90 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF17-206 - 662 2.4e-45 149.3 150.6 14 17 1.2e-06 0.0015 19.2 1.4 1 23 554 576 554 577 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF17-206 - 662 2.4e-45 149.3 150.6 15 17 4.5e-05 0.054 14.4 1.1 1 23 582 604 582 605 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF17-206 - 662 2.4e-45 149.3 150.6 16 17 4.6e-06 0.0056 17.4 0.6 1 23 610 632 610 633 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF17-206 - 662 2.4e-45 149.3 150.6 17 17 4e-06 0.0048 17.6 1.2 1 23 638 660 638 661 0.95 C2H2-type zinc finger KRAB PF01352.27 42 ZNF17-206 - 662 1.1e-18 66.5 0.2 1 1 1.7e-21 2e-18 65.7 0.2 2 42 8 48 7 48 0.98 KRAB box zf-C2H2_6 PF13912.6 27 ZNF17-206 - 662 1.9e-13 50.0 146.9 1 17 5.9 7.1e+03 -2.8 0.0 10 16 182 188 181 188 0.84 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF17-206 - 662 1.9e-13 50.0 146.9 2 17 0.64 7.6e+02 0.3 6.0 2 24 190 212 190 215 0.83 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF17-206 - 662 1.9e-13 50.0 146.9 3 17 3.4e-07 0.00041 20.3 0.7 2 24 218 240 218 243 0.95 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF17-206 - 662 1.9e-13 50.0 146.9 4 17 0.0009 1.1 9.4 0.5 2 12 246 256 246 257 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF17-206 - 662 1.9e-13 50.0 146.9 5 17 0.0013 1.6 8.8 0.4 2 11 274 283 274 284 0.96 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF17-206 - 662 1.9e-13 50.0 146.9 6 17 6.5e-05 0.078 13.0 0.8 2 24 302 324 302 327 0.92 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF17-206 - 662 1.9e-13 50.0 146.9 7 17 0.0025 3 7.9 0.7 2 24 330 352 330 355 0.90 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF17-206 - 662 1.9e-13 50.0 146.9 8 17 0.0019 2.3 8.3 0.8 2 20 386 404 386 410 0.78 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF17-206 - 662 1.9e-13 50.0 146.9 9 17 0.02 24 5.1 1.9 2 11 414 423 414 423 0.89 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF17-206 - 662 1.9e-13 50.0 146.9 10 17 0.06 71 3.6 3.4 2 20 442 460 442 467 0.77 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF17-206 - 662 1.9e-13 50.0 146.9 11 17 0.012 14 5.8 1.6 2 11 470 479 470 480 0.90 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF17-206 - 662 1.9e-13 50.0 146.9 12 17 0.0012 1.4 9.0 3.2 2 12 498 508 498 509 0.95 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF17-206 - 662 1.9e-13 50.0 146.9 13 17 0.0062 7.4 6.7 1.5 2 12 526 536 526 548 0.87 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF17-206 - 662 1.9e-13 50.0 146.9 14 17 0.0004 0.48 10.5 0.8 2 12 554 564 553 578 0.83 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF17-206 - 662 1.9e-13 50.0 146.9 15 17 0.039 47 4.1 0.9 2 11 582 591 581 592 0.87 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF17-206 - 662 1.9e-13 50.0 146.9 16 17 5.1e-08 6e-05 22.9 0.5 2 24 610 632 610 635 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF17-206 - 662 1.9e-13 50.0 146.9 17 17 0.0044 5.2 7.2 2.3 2 12 638 648 638 660 0.79 C2H2-type zinc finger Zn-ribbon_8 PF09723.10 40 ZNF17-206 - 662 2.5e-11 43.5 99.2 1 13 1.2 1.4e+03 -0.5 0.1 25 34 82 91 70 96 0.70 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF17-206 - 662 2.5e-11 43.5 99.2 2 13 0.00028 0.34 11.1 5.7 6 34 190 225 189 229 0.88 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF17-206 - 662 2.5e-11 43.5 99.2 3 13 5.1e-06 0.0061 16.6 2.4 6 36 246 283 245 287 0.88 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF17-206 - 662 2.5e-11 43.5 99.2 4 13 3.7e-05 0.044 13.9 2.4 6 34 274 309 273 315 0.91 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF17-206 - 662 2.5e-11 43.5 99.2 5 13 0.0015 1.8 8.7 2.9 6 34 302 337 301 338 0.93 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF17-206 - 662 2.5e-11 43.5 99.2 6 13 0.011 13 6.0 3.6 6 34 330 365 329 368 0.91 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF17-206 - 662 2.5e-11 43.5 99.2 7 13 0.00037 0.44 10.7 4.5 6 34 386 421 385 424 0.92 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF17-206 - 662 2.5e-11 43.5 99.2 8 13 0.0082 9.9 6.4 7.2 6 34 442 477 441 481 0.90 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF17-206 - 662 2.5e-11 43.5 99.2 9 13 0.069 83 3.4 5.1 6 35 470 506 469 508 0.82 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF17-206 - 662 2.5e-11 43.5 99.2 10 13 0.016 19 5.5 5.8 6 34 498 533 497 537 0.89 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF17-206 - 662 2.5e-11 43.5 99.2 11 13 1.4e-05 0.017 15.2 1.8 6 34 554 589 553 593 0.92 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF17-206 - 662 2.5e-11 43.5 99.2 12 13 0.00029 0.35 11.0 4.4 6 34 610 645 609 648 0.91 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF17-206 - 662 2.5e-11 43.5 99.2 13 13 0.0039 4.7 7.4 0.4 6 17 638 649 637 659 0.82 Zinc ribbon domain zf_UBZ PF18439.1 32 ZNF17-206 - 662 5.1e-07 29.2 92.4 1 18 0.34 4.1e+02 0.7 0.3 3 21 84 103 82 103 0.84 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF17-206 - 662 5.1e-07 29.2 92.4 2 18 0.057 68 3.2 2.4 1 20 188 208 188 209 0.73 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF17-206 - 662 5.1e-07 29.2 92.4 3 18 0.014 17 5.1 0.1 3 12 218 227 216 237 0.78 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF17-206 - 662 5.1e-07 29.2 92.4 4 18 0.0026 3.1 7.5 0.1 3 16 246 260 244 265 0.77 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF17-206 - 662 5.1e-07 29.2 92.4 5 18 0.0037 4.4 7.0 0.2 3 20 274 292 272 293 0.79 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF17-206 - 662 5.1e-07 29.2 92.4 6 18 0.0017 2.1 8.0 0.0 3 14 302 313 300 318 0.86 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF17-206 - 662 5.1e-07 29.2 92.4 7 18 0.18 2.1e+02 1.6 0.0 3 12 330 339 329 349 0.83 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF17-206 - 662 5.1e-07 29.2 92.4 8 18 2.3 2.7e+03 -2.0 2.1 3 12 358 367 357 374 0.85 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF17-206 - 662 5.1e-07 29.2 92.4 9 18 0.11 1.4e+02 2.2 0.4 3 12 386 395 384 396 0.86 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF17-206 - 662 5.1e-07 29.2 92.4 10 18 0.011 13 5.5 0.1 3 12 414 423 412 432 0.85 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF17-206 - 662 5.1e-07 29.2 92.4 11 18 0.14 1.6e+02 1.9 0.4 3 12 442 451 440 452 0.86 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF17-206 - 662 5.1e-07 29.2 92.4 12 18 0.0022 2.6 7.7 0.7 3 21 470 489 468 489 0.90 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF17-206 - 662 5.1e-07 29.2 92.4 13 18 0.023 28 4.4 0.6 3 21 498 517 497 517 0.85 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF17-206 - 662 5.1e-07 29.2 92.4 14 18 0.013 15 5.3 0.2 3 12 526 535 524 540 0.85 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF17-206 - 662 5.1e-07 29.2 92.4 15 18 0.014 17 5.1 0.2 2 15 553 566 552 573 0.83 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF17-206 - 662 5.1e-07 29.2 92.4 16 18 0.00058 0.69 9.6 0.1 2 21 581 601 580 601 0.85 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF17-206 - 662 5.1e-07 29.2 92.4 17 18 0.011 13 5.4 0.1 3 12 610 619 608 625 0.89 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF17-206 - 662 5.1e-07 29.2 92.4 18 18 0.0049 5.9 6.6 0.3 3 20 638 656 636 657 0.79 Ubiquitin-Binding Zinc Finger # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF17-206.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF17-206.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF17-206.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF17-206.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF17-206.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:00:44 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZNF17-207 - 634 3.2e-118 381.4 141.7 1 19 0.95 1.1e+03 0.4 0.3 5 13 88 96 84 129 0.49 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF17-207 - 634 3.2e-118 381.4 141.7 2 19 0.02 22 5.7 0.6 9 24 156 171 146 172 0.80 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF17-207 - 634 3.2e-118 381.4 141.7 3 19 3.4e-08 3.8e-05 23.9 1.2 4 24 179 199 177 201 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF17-207 - 634 3.2e-118 381.4 141.7 4 19 1.2e-11 1.3e-08 34.9 0.4 2 25 205 228 204 228 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF17-207 - 634 3.2e-118 381.4 141.7 5 19 2.7e-11 3e-08 33.7 0.1 2 25 233 256 232 257 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF17-207 - 634 3.2e-118 381.4 141.7 6 19 2e-09 2.3e-06 27.8 0.6 1 26 260 285 260 285 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF17-207 - 634 3.2e-118 381.4 141.7 7 19 1.2e-07 0.00013 22.2 0.9 1 24 288 311 288 311 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF17-207 - 634 3.2e-118 381.4 141.7 8 19 5.3e-08 6e-05 23.3 2.3 1 24 316 339 316 339 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF17-207 - 634 3.2e-118 381.4 141.7 9 19 2.6e-10 2.9e-07 30.6 0.6 5 25 348 368 345 369 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF17-207 - 634 3.2e-118 381.4 141.7 10 19 2.1e-11 2.4e-08 34.0 1.0 2 24 373 395 372 395 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF17-207 - 634 3.2e-118 381.4 141.7 11 19 2.2e-10 2.5e-07 30.8 1.0 5 25 404 424 401 425 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF17-207 - 634 3.2e-118 381.4 141.7 12 19 1.1e-11 1.2e-08 35.0 0.3 2 25 429 452 428 453 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF17-207 - 634 3.2e-118 381.4 141.7 13 19 7.4e-11 8.3e-08 32.3 1.7 2 25 457 480 456 481 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF17-207 - 634 3.2e-118 381.4 141.7 14 19 1.6e-10 1.8e-07 31.3 1.5 2 26 485 509 484 509 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF17-207 - 634 3.2e-118 381.4 141.7 15 19 4e-07 0.00045 20.5 0.5 4 25 515 536 514 537 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF17-207 - 634 3.2e-118 381.4 141.7 16 19 8.9e-08 0.0001 22.6 4.4 1 24 540 563 540 563 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF17-207 - 634 3.2e-118 381.4 141.7 17 19 2.4e-11 2.7e-08 33.9 0.5 3 25 570 592 569 593 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF17-207 - 634 3.2e-118 381.4 141.7 18 19 1e-10 1.1e-07 31.9 0.1 2 25 597 620 596 621 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF17-207 - 634 3.2e-118 381.4 141.7 19 19 2 2.2e+03 -0.7 1.3 1 10 624 633 624 634 0.87 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZNF17-207 - 634 5.7e-77 250.1 157.3 1 18 8.1 9.1e+03 -2.5 0.4 12 23 81 92 80 92 0.82 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF17-207 - 634 5.7e-77 250.1 157.3 2 18 5e-05 0.056 13.9 7.4 1 23 162 184 162 184 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF17-207 - 634 5.7e-77 250.1 157.3 3 18 4.7e-08 5.2e-05 23.5 0.8 1 23 190 212 190 212 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF17-207 - 634 5.7e-77 250.1 157.3 4 18 2.9e-07 0.00032 21.0 0.5 1 23 218 240 218 240 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF17-207 - 634 5.7e-77 250.1 157.3 5 18 2.1e-07 0.00024 21.4 1.4 1 23 246 268 246 268 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF17-207 - 634 5.7e-77 250.1 157.3 6 18 2.9e-06 0.0032 17.8 0.2 1 23 274 296 274 296 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF17-207 - 634 5.7e-77 250.1 157.3 7 18 3e-06 0.0034 17.7 0.3 3 23 304 324 302 324 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF17-207 - 634 5.7e-77 250.1 157.3 8 18 0.00013 0.14 12.6 4.4 1 23 330 352 330 352 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF17-207 - 634 5.7e-77 250.1 157.3 9 18 3.2e-08 3.5e-05 24.0 1.6 1 23 358 380 358 380 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF17-207 - 634 5.7e-77 250.1 157.3 10 18 4.1e-07 0.00046 20.5 0.3 1 23 386 408 386 408 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF17-207 - 634 5.7e-77 250.1 157.3 11 18 1.6e-06 0.0018 18.6 5.7 1 23 414 436 414 436 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF17-207 - 634 5.7e-77 250.1 157.3 12 18 3.9e-07 0.00043 20.6 2.4 1 23 442 464 442 464 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF17-207 - 634 5.7e-77 250.1 157.3 13 18 8.7e-06 0.0098 16.3 2.8 1 23 470 492 470 492 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF17-207 - 634 5.7e-77 250.1 157.3 14 18 4.6e-05 0.052 14.0 6.1 1 23 498 520 498 520 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF17-207 - 634 5.7e-77 250.1 157.3 15 18 2.1e-09 2.4e-06 27.7 1.4 1 23 526 548 526 548 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF17-207 - 634 5.7e-77 250.1 157.3 16 18 3.9e-07 0.00044 20.6 1.3 1 23 554 576 554 576 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF17-207 - 634 5.7e-77 250.1 157.3 17 18 4.9e-09 5.4e-06 26.6 0.8 1 23 582 604 582 604 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF17-207 - 634 5.7e-77 250.1 157.3 18 18 4.2e-09 4.7e-06 26.8 1.3 1 23 610 632 610 632 0.99 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZNF17-207 - 634 1.1e-45 150.3 150.6 1 17 0.0023 2.6 9.1 6.1 1 23 162 184 162 185 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF17-207 - 634 1.1e-45 150.3 150.6 2 17 1.3e-05 0.014 16.2 0.5 1 23 190 212 190 213 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF17-207 - 634 1.1e-45 150.3 150.6 3 17 4e-05 0.045 14.6 0.7 1 23 218 240 218 241 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF17-207 - 634 1.1e-45 150.3 150.6 4 17 7.5e-06 0.0084 16.9 1.4 1 23 246 268 246 269 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF17-207 - 634 1.1e-45 150.3 150.6 5 17 3.2e-05 0.036 14.9 0.4 1 23 274 296 274 297 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF17-207 - 634 1.1e-45 150.3 150.6 6 17 5.5e-05 0.062 14.2 0.4 2 23 303 324 302 325 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF17-207 - 634 1.1e-45 150.3 150.6 7 17 0.0015 1.7 9.7 4.2 1 23 330 352 330 353 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF17-207 - 634 1.1e-45 150.3 150.6 8 17 5.3e-05 0.059 14.2 1.1 1 23 358 380 358 381 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF17-207 - 634 1.1e-45 150.3 150.6 9 17 0.00023 0.25 12.3 0.3 1 23 386 408 386 409 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF17-207 - 634 1.1e-45 150.3 150.6 10 17 0.00051 0.57 11.2 4.5 1 23 414 436 414 437 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF17-207 - 634 1.1e-45 150.3 150.6 11 17 5.7e-05 0.064 14.1 2.6 1 23 442 464 442 465 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF17-207 - 634 1.1e-45 150.3 150.6 12 17 1.6e-06 0.0018 18.9 2.2 1 23 470 492 470 493 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF17-207 - 634 1.1e-45 150.3 150.6 13 17 0.0093 10 7.2 4.7 1 23 498 520 498 521 0.90 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF17-207 - 634 1.1e-45 150.3 150.6 14 17 1.2e-06 0.0014 19.3 1.4 1 23 526 548 526 549 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF17-207 - 634 1.1e-45 150.3 150.6 15 17 4.6e-05 0.051 14.4 1.1 1 23 554 576 554 577 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF17-207 - 634 1.1e-45 150.3 150.6 16 17 4.7e-06 0.0053 17.5 0.6 1 23 582 604 582 605 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF17-207 - 634 1.1e-45 150.3 150.6 17 17 4.1e-06 0.0046 17.7 1.2 1 23 610 632 610 633 0.95 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF17-207 - 634 8.1e-14 51.2 146.9 1 17 6.1 6.8e+03 -2.7 0.0 10 16 154 160 153 160 0.84 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF17-207 - 634 8.1e-14 51.2 146.9 2 17 0.65 7.3e+02 0.3 6.0 2 24 162 184 162 187 0.83 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF17-207 - 634 8.1e-14 51.2 146.9 3 17 3.5e-07 0.00039 20.3 0.7 2 24 190 212 190 215 0.95 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF17-207 - 634 8.1e-14 51.2 146.9 4 17 0.00092 1 9.4 0.5 2 12 218 228 218 229 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF17-207 - 634 8.1e-14 51.2 146.9 5 17 0.0013 1.5 8.9 0.4 2 11 246 255 246 256 0.96 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF17-207 - 634 8.1e-14 51.2 146.9 6 17 6.6e-05 0.074 13.1 0.8 2 24 274 296 274 299 0.92 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF17-207 - 634 8.1e-14 51.2 146.9 7 17 0.0026 2.9 8.0 0.7 2 24 302 324 302 327 0.90 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF17-207 - 634 8.1e-14 51.2 146.9 8 17 0.0019 2.2 8.4 0.8 2 20 358 376 358 382 0.78 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF17-207 - 634 8.1e-14 51.2 146.9 9 17 0.02 23 5.1 1.9 2 11 386 395 386 395 0.89 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF17-207 - 634 8.1e-14 51.2 146.9 10 17 0.06 68 3.6 3.4 2 20 414 432 414 439 0.77 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF17-207 - 634 8.1e-14 51.2 146.9 11 17 0.012 14 5.8 1.6 2 11 442 451 442 452 0.90 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF17-207 - 634 8.1e-14 51.2 146.9 12 17 0.0012 1.4 9.0 3.2 2 12 470 480 470 481 0.95 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF17-207 - 634 8.1e-14 51.2 146.9 13 17 0.0063 7.1 6.8 1.5 2 12 498 508 498 520 0.87 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF17-207 - 634 8.1e-14 51.2 146.9 14 17 0.0004 0.45 10.6 0.8 2 12 526 536 525 550 0.83 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF17-207 - 634 8.1e-14 51.2 146.9 15 17 0.04 45 4.2 0.9 2 11 554 563 553 564 0.87 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF17-207 - 634 8.1e-14 51.2 146.9 16 17 5.1e-08 5.8e-05 23.0 0.5 2 24 582 604 582 607 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF17-207 - 634 8.1e-14 51.2 146.9 17 17 0.0044 4.9 7.3 2.3 2 12 610 620 610 632 0.79 C2H2-type zinc finger Zn-ribbon_8 PF09723.10 40 ZNF17-207 - 634 1.2e-11 44.5 99.0 1 13 1.2 1.4e+03 -0.5 0.1 25 34 54 63 42 68 0.70 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF17-207 - 634 1.2e-11 44.5 99.0 2 13 0.00028 0.32 11.2 5.7 6 34 162 197 161 201 0.88 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF17-207 - 634 1.2e-11 44.5 99.0 3 13 6.5e-06 0.0073 16.4 2.7 6 36 218 255 217 259 0.88 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF17-207 - 634 1.2e-11 44.5 99.0 4 13 3.9e-05 0.043 13.9 2.5 6 34 246 281 244 287 0.91 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF17-207 - 634 1.2e-11 44.5 99.0 5 13 0.0015 1.7 8.8 2.8 6 34 274 309 273 309 0.93 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF17-207 - 634 1.2e-11 44.5 99.0 6 13 0.0091 10 6.3 3.4 6 34 302 337 301 341 0.91 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF17-207 - 634 1.2e-11 44.5 99.0 7 13 0.00032 0.36 11.0 4.3 6 34 358 393 357 398 0.92 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF17-207 - 634 1.2e-11 44.5 99.0 8 13 0.01 12 6.2 7.5 6 34 414 449 412 453 0.90 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF17-207 - 634 1.2e-11 44.5 99.0 9 13 0.066 74 3.6 5.0 6 35 442 478 441 480 0.82 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF17-207 - 634 1.2e-11 44.5 99.0 10 13 0.015 16 5.7 5.6 6 34 470 505 469 509 0.89 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF17-207 - 634 1.2e-11 44.5 99.0 11 13 1.5e-05 0.016 15.3 1.8 6 34 526 561 525 565 0.92 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF17-207 - 634 1.2e-11 44.5 99.0 12 13 0.00031 0.34 11.0 4.5 6 34 582 617 581 621 0.90 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF17-207 - 634 1.2e-11 44.5 99.0 13 13 0.004 4.4 7.5 0.4 6 17 610 621 609 631 0.82 Zinc ribbon domain zf_UBZ PF18439.1 32 ZNF17-207 - 634 2.3e-07 30.3 92.4 1 18 0.35 3.9e+02 0.8 0.3 3 21 56 75 54 75 0.84 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF17-207 - 634 2.3e-07 30.3 92.4 2 18 0.058 65 3.2 2.4 1 20 160 180 160 181 0.73 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF17-207 - 634 2.3e-07 30.3 92.4 3 18 0.014 16 5.2 0.1 3 12 190 199 188 209 0.78 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF17-207 - 634 2.3e-07 30.3 92.4 4 18 0.0026 2.9 7.5 0.1 3 16 218 232 216 237 0.77 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF17-207 - 634 2.3e-07 30.3 92.4 5 18 0.0038 4.2 7.0 0.2 3 20 246 264 244 265 0.79 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF17-207 - 634 2.3e-07 30.3 92.4 6 18 0.0018 2 8.1 0.0 3 14 274 285 272 290 0.86 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF17-207 - 634 2.3e-07 30.3 92.4 7 18 0.18 2e+02 1.7 0.0 3 12 302 311 301 321 0.83 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF17-207 - 634 2.3e-07 30.3 92.4 8 18 2.3 2.6e+03 -1.9 2.1 3 12 330 339 329 346 0.85 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF17-207 - 634 2.3e-07 30.3 92.4 9 18 0.12 1.3e+02 2.3 0.4 3 12 358 367 356 368 0.86 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF17-207 - 634 2.3e-07 30.3 92.4 10 18 0.011 12 5.5 0.1 3 12 386 395 384 404 0.85 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF17-207 - 634 2.3e-07 30.3 92.4 11 18 0.14 1.6e+02 2.0 0.4 3 12 414 423 412 424 0.86 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF17-207 - 634 2.3e-07 30.3 92.4 12 18 0.0022 2.5 7.8 0.7 3 21 442 461 440 461 0.90 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF17-207 - 634 2.3e-07 30.3 92.4 13 18 0.024 27 4.5 0.6 3 21 470 489 469 489 0.85 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF17-207 - 634 2.3e-07 30.3 92.4 14 18 0.013 15 5.3 0.2 3 12 498 507 496 512 0.85 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF17-207 - 634 2.3e-07 30.3 92.4 15 18 0.014 16 5.2 0.2 2 15 525 538 524 545 0.83 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF17-207 - 634 2.3e-07 30.3 92.4 16 18 0.00059 0.66 9.6 0.1 2 21 553 573 552 573 0.85 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF17-207 - 634 2.3e-07 30.3 92.4 17 18 0.011 13 5.5 0.1 3 12 582 591 580 597 0.89 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF17-207 - 634 2.3e-07 30.3 92.4 18 18 0.005 5.6 6.6 0.3 3 20 610 628 608 629 0.79 Ubiquitin-Binding Zinc Finger # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF17-207.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF17-207.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF17-207.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF17-207.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF17-207.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:00:45 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- SCAN PF02023.17 90 ZNF174-201 - 407 4.5e-41 138.6 3.2 1 1 9e-44 9.5e-41 137.5 3.2 1 89 42 130 42 131 0.98 SCAN domain zf-C2H2 PF00096.26 23 ZNF174-201 - 407 4.7e-15 55.1 32.9 1 4 2.8 3e+03 -1.0 1.5 3 12 39 51 38 54 0.84 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF174-201 - 407 4.7e-15 55.1 32.9 2 4 1.2e-08 1.2e-05 25.5 1.1 1 23 326 348 326 348 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF174-201 - 407 4.7e-15 55.1 32.9 3 4 8.5e-08 8.9e-05 22.7 1.5 1 23 354 376 354 376 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF174-201 - 407 4.7e-15 55.1 32.9 4 4 5.9e-08 6.3e-05 23.2 7.1 1 23 382 404 382 405 0.96 Zinc finger, C2H2 type zf-H2C2_2 PF13465.6 26 ZNF174-201 - 407 2.1e-14 53.2 36.0 1 5 0.93 9.8e+02 0.5 0.0 16 25 38 50 20 51 0.74 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF174-201 - 407 2.1e-14 53.2 36.0 2 5 3.1 3.2e+03 -1.2 0.2 1 8 275 282 275 284 0.85 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF174-201 - 407 2.1e-14 53.2 36.0 3 5 2.9e-05 0.03 14.7 0.6 12 25 323 336 312 336 0.85 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF174-201 - 407 2.1e-14 53.2 36.0 4 5 7.6e-10 8e-07 29.2 1.8 2 25 341 364 340 365 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF174-201 - 407 2.1e-14 53.2 36.0 5 5 8.8e-11 9.3e-08 32.2 0.4 2 25 369 392 368 393 0.94 Zinc-finger double domain # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF174-201.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF174-201.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF174-201.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF174-201.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF174-201.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:00:45 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- SCAN PF02023.17 90 ZNF174-202 - 234 1.8e-41 139.9 3.2 1 1 3.6e-45 3.2e-41 139.0 3.2 1 89 42 130 42 131 0.98 SCAN domain # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF174-202.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF174-202.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF174-202.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF174-202.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF174-202.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:00:46 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- SCAN PF02023.17 90 ZNF174-203 - 407 4.5e-41 138.6 3.2 1 1 9e-44 9.5e-41 137.5 3.2 1 89 42 130 42 131 0.98 SCAN domain zf-C2H2 PF00096.26 23 ZNF174-203 - 407 4.7e-15 55.1 32.9 1 4 2.8 3e+03 -1.0 1.5 3 12 39 51 38 54 0.84 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF174-203 - 407 4.7e-15 55.1 32.9 2 4 1.2e-08 1.2e-05 25.5 1.1 1 23 326 348 326 348 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF174-203 - 407 4.7e-15 55.1 32.9 3 4 8.5e-08 8.9e-05 22.7 1.5 1 23 354 376 354 376 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF174-203 - 407 4.7e-15 55.1 32.9 4 4 5.9e-08 6.3e-05 23.2 7.1 1 23 382 404 382 405 0.96 Zinc finger, C2H2 type zf-H2C2_2 PF13465.6 26 ZNF174-203 - 407 2.1e-14 53.2 36.0 1 5 0.93 9.8e+02 0.5 0.0 16 25 38 50 20 51 0.74 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF174-203 - 407 2.1e-14 53.2 36.0 2 5 3.1 3.2e+03 -1.2 0.2 1 8 275 282 275 284 0.85 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF174-203 - 407 2.1e-14 53.2 36.0 3 5 2.9e-05 0.03 14.7 0.6 12 25 323 336 312 336 0.85 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF174-203 - 407 2.1e-14 53.2 36.0 4 5 7.6e-10 8e-07 29.2 1.8 2 25 341 364 340 365 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF174-203 - 407 2.1e-14 53.2 36.0 5 5 8.8e-11 9.3e-08 32.2 0.4 2 25 369 392 368 393 0.94 Zinc-finger double domain # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF174-203.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF174-203.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF174-203.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF174-203.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF174-203.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:00:46 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- SCAN PF02023.17 90 ZNF174-204 - 249 2.1e-41 139.6 3.2 1 1 4.1e-45 3.7e-41 138.8 3.2 1 89 42 130 42 131 0.98 SCAN domain # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF174-204.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF174-204.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF174-204.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF174-204.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF174-204.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:00:46 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- SCAN PF02023.17 90 ZNF174-205 - 234 1.8e-41 139.9 3.2 1 1 3.6e-45 3.2e-41 139.0 3.2 1 89 42 130 42 131 0.98 SCAN domain # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF174-205.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF174-205.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF174-205.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF174-205.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF174-205.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:00:47 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZNF175-201 - 711 3.8e-89 289.5 113.4 1 17 4.9 4.6e+03 -1.7 3.2 8 24 245 261 235 263 0.74 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF175-201 - 711 3.8e-89 289.5 113.4 2 17 0.081 76 4.0 0.3 8 25 272 289 267 290 0.89 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF175-201 - 711 3.8e-89 289.5 113.4 3 17 0.00066 0.62 10.6 0.3 6 24 298 316 291 316 0.85 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF175-201 - 711 3.8e-89 289.5 113.4 4 17 0.14 1.3e+02 3.2 0.3 9 24 329 344 326 346 0.76 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF175-201 - 711 3.8e-89 289.5 113.4 5 17 1.4e-07 0.00014 22.2 4.2 3 24 351 372 349 374 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF175-201 - 711 3.8e-89 289.5 113.4 6 17 8.1e-09 7.6e-06 26.1 0.7 2 25 378 401 377 402 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF175-201 - 711 3.8e-89 289.5 113.4 7 17 6.5e-09 6.1e-06 26.4 0.1 5 25 409 429 406 430 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF175-201 - 711 3.8e-89 289.5 113.4 8 17 7.1e-07 0.00067 20.0 0.0 2 24 434 456 433 458 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF175-201 - 711 3.8e-89 289.5 113.4 9 17 2.1e-10 2e-07 31.1 1.5 2 24 462 484 461 486 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF175-201 - 711 3.8e-89 289.5 113.4 10 17 1.8e-10 1.7e-07 31.3 0.6 5 25 493 513 489 514 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF175-201 - 711 3.8e-89 289.5 113.4 11 17 1.9e-08 1.8e-05 24.9 2.0 1 25 517 541 517 542 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF175-201 - 711 3.8e-89 289.5 113.4 12 17 4e-12 3.7e-09 36.6 0.4 2 26 546 570 546 570 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF175-201 - 711 3.8e-89 289.5 113.4 13 17 3e-10 2.9e-07 30.6 0.8 3 25 575 597 573 597 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF175-201 - 711 3.8e-89 289.5 113.4 14 17 3.3e-07 0.00031 21.0 3.1 4 25 604 625 601 626 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF175-201 - 711 3.8e-89 289.5 113.4 15 17 1.4e-09 1.3e-06 28.6 0.3 2 25 630 653 629 654 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF175-201 - 711 3.8e-89 289.5 113.4 16 17 5.3e-11 5e-08 33.0 0.1 2 26 658 682 657 682 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF175-201 - 711 3.8e-89 289.5 113.4 17 17 0.00042 0.4 11.2 0.6 1 19 685 703 685 710 0.90 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZNF175-201 - 711 4.2e-75 244.2 119.2 1 16 0.29 2.7e+02 2.3 3.6 3 20 252 271 251 273 0.91 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF175-201 - 711 4.2e-75 244.2 119.2 2 16 0.0028 2.7 8.6 0.3 3 17 281 295 281 296 0.94 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF175-201 - 711 4.2e-75 244.2 119.2 3 16 0.031 29 5.4 0.1 1 10 307 316 307 322 0.89 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF175-201 - 711 4.2e-75 244.2 119.2 4 16 1.8e-07 0.00017 21.9 1.5 2 23 336 357 335 357 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF175-201 - 711 4.2e-75 244.2 119.2 5 16 4.7e-07 0.00044 20.5 4.0 1 23 363 385 363 385 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF175-201 - 711 4.2e-75 244.2 119.2 6 16 6.2e-08 5.9e-05 23.3 0.1 1 23 391 413 391 413 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF175-201 - 711 4.2e-75 244.2 119.2 7 16 3.9e-08 3.7e-05 23.9 0.4 1 23 419 441 419 441 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF175-201 - 711 4.2e-75 244.2 119.2 8 16 3e-06 0.0028 18.0 0.2 1 23 447 469 447 469 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF175-201 - 711 4.2e-75 244.2 119.2 9 16 9.2e-08 8.7e-05 22.8 3.5 1 23 475 497 475 497 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF175-201 - 711 4.2e-75 244.2 119.2 10 16 1.6e-09 1.5e-06 28.4 2.0 1 23 503 525 503 525 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF175-201 - 711 4.2e-75 244.2 119.2 11 16 4.7e-06 0.0045 17.4 0.9 1 23 531 553 531 553 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF175-201 - 711 4.2e-75 244.2 119.2 12 16 6.1e-09 5.8e-06 26.5 1.4 1 23 559 581 559 581 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF175-201 - 711 4.2e-75 244.2 119.2 13 16 1.7e-07 0.00016 21.9 1.6 1 23 587 609 587 609 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF175-201 - 711 4.2e-75 244.2 119.2 14 16 1.4e-08 1.3e-05 25.4 0.6 1 23 615 637 615 637 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF175-201 - 711 4.2e-75 244.2 119.2 15 16 8.8e-09 8.3e-06 26.0 0.5 1 23 643 665 643 665 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF175-201 - 711 4.2e-75 244.2 119.2 16 16 9.8e-09 9.3e-06 25.8 1.3 1 23 671 693 671 693 0.98 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZNF175-201 - 711 5.7e-38 126.3 114.6 1 16 4.7 4.4e+03 -0.9 2.6 5 20 256 271 252 273 0.83 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF175-201 - 711 5.7e-38 126.3 114.6 2 16 0.026 25 6.1 0.2 3 16 281 294 280 297 0.85 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF175-201 - 711 5.7e-38 126.3 114.6 3 16 0.34 3.2e+02 2.6 0.1 1 16 307 322 307 330 0.71 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF175-201 - 711 5.7e-38 126.3 114.6 4 16 1.5e-05 0.014 16.2 1.6 2 23 336 357 335 358 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF175-201 - 711 5.7e-38 126.3 114.6 5 16 0.0001 0.096 13.6 3.2 1 23 363 385 363 386 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF175-201 - 711 5.7e-38 126.3 114.6 6 16 2.8e-05 0.026 15.3 0.2 1 23 391 413 391 414 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF175-201 - 711 5.7e-38 126.3 114.6 7 16 4.6e-05 0.044 14.6 0.5 1 23 419 441 419 442 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF175-201 - 711 5.7e-38 126.3 114.6 8 16 0.00041 0.39 11.7 0.3 1 23 447 469 447 470 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF175-201 - 711 5.7e-38 126.3 114.6 9 16 9.4e-05 0.089 13.7 2.3 1 23 475 497 475 498 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF175-201 - 711 5.7e-38 126.3 114.6 10 16 8.8e-06 0.0083 16.9 1.3 1 23 503 525 503 526 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF175-201 - 711 5.7e-38 126.3 114.6 11 16 0.00086 0.81 10.7 0.8 1 23 531 553 531 554 0.83 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF175-201 - 711 5.7e-38 126.3 114.6 12 16 3.7e-06 0.0035 18.0 1.4 1 23 559 581 559 582 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF175-201 - 711 5.7e-38 126.3 114.6 13 16 6.8e-05 0.064 14.1 1.1 1 23 587 609 587 610 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF175-201 - 711 5.7e-38 126.3 114.6 14 16 2e-05 0.018 15.8 0.7 1 23 615 637 615 638 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF175-201 - 711 5.7e-38 126.3 114.6 15 16 2.1e-05 0.02 15.7 0.6 1 23 643 665 643 666 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF175-201 - 711 5.7e-38 126.3 114.6 16 16 2.3e-05 0.022 15.6 0.8 1 23 671 693 671 694 0.96 C2H2-type zinc finger KRAB PF01352.27 42 ZNF175-201 - 711 5.5e-23 80.3 0.3 1 1 1.2e-25 1.2e-22 79.3 0.3 1 42 26 67 26 67 0.98 KRAB box Zn-ribbon_8 PF09723.10 40 ZNF175-201 - 711 5.5e-14 52.0 76.4 1 12 0.025 24 5.1 3.8 8 36 257 288 256 292 0.77 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF175-201 - 711 5.5e-14 52.0 76.4 2 12 0.045 42 4.4 2.4 7 34 308 342 307 348 0.68 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF175-201 - 711 5.5e-14 52.0 76.4 3 12 0.0096 9 6.5 3.9 8 34 337 370 336 372 0.84 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF175-201 - 711 5.5e-14 52.0 76.4 4 12 0.0016 1.5 9.0 5.5 6 34 363 398 362 398 0.84 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF175-201 - 711 5.5e-14 52.0 76.4 5 12 3.6e-05 0.034 14.2 3.3 6 36 391 428 390 432 0.87 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF175-201 - 711 5.5e-14 52.0 76.4 6 12 9.7e-05 0.091 12.9 1.4 5 34 418 454 417 460 0.87 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF175-201 - 711 5.5e-14 52.0 76.4 7 12 0.002 1.9 8.7 2.8 6 34 447 482 445 487 0.88 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF175-201 - 711 5.5e-14 52.0 76.4 8 12 0.014 14 5.9 0.5 6 15 475 484 473 492 0.91 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF175-201 - 711 5.5e-14 52.0 76.4 9 12 6.6e-06 0.0062 16.6 2.0 6 35 503 539 502 544 0.88 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF175-201 - 711 5.5e-14 52.0 76.4 10 12 2.4e-05 0.023 14.8 4.2 6 34 559 594 558 599 0.92 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF175-201 - 711 5.5e-14 52.0 76.4 11 12 0.00057 0.53 10.4 2.2 6 35 587 624 586 628 0.76 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF175-201 - 711 5.5e-14 52.0 76.4 12 12 6.6e-06 0.0062 16.6 1.3 6 35 643 679 642 684 0.92 Zinc ribbon domain zf_UBZ PF18439.1 32 ZNF175-201 - 711 1.9e-09 36.9 62.4 1 15 1.4 1.3e+03 -0.9 0.2 5 12 281 288 280 292 0.83 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF175-201 - 711 1.9e-09 36.9 62.4 2 15 0.33 3.1e+02 1.1 0.1 3 12 307 316 305 322 0.81 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF175-201 - 711 1.9e-09 36.9 62.4 3 15 0.011 10 5.8 0.8 4 21 336 354 335 354 0.90 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF175-201 - 711 1.9e-09 36.9 62.4 4 15 0.19 1.8e+02 1.8 0.3 3 11 363 371 361 373 0.86 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF175-201 - 711 1.9e-09 36.9 62.4 5 15 0.0066 6.2 6.5 0.1 3 15 391 403 389 410 0.84 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF175-201 - 711 1.9e-09 36.9 62.4 6 15 0.0062 5.9 6.6 0.1 2 13 418 429 417 436 0.87 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF175-201 - 711 1.9e-09 36.9 62.4 7 15 0.072 68 3.2 0.1 2 12 446 456 445 462 0.85 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF175-201 - 711 1.9e-09 36.9 62.4 8 15 0.042 39 3.9 0.4 3 17 475 490 473 494 0.78 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF175-201 - 711 1.9e-09 36.9 62.4 9 15 0.0097 9.1 6.0 0.1 3 13 503 513 501 521 0.86 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF175-201 - 711 1.9e-09 36.9 62.4 10 15 0.01 9.7 5.9 0.1 2 13 530 541 529 547 0.82 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF175-201 - 711 1.9e-09 36.9 62.4 11 15 0.00019 0.18 11.4 0.3 3 21 559 578 557 578 0.93 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF175-201 - 711 1.9e-09 36.9 62.4 12 15 0.018 17 5.1 0.1 3 12 587 596 585 605 0.89 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF175-201 - 711 1.9e-09 36.9 62.4 13 15 0.03 29 4.4 0.1 3 21 615 634 613 634 0.85 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF175-201 - 711 1.9e-09 36.9 62.4 14 15 0.018 17 5.1 0.2 3 16 643 657 641 662 0.78 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF175-201 - 711 1.9e-09 36.9 62.4 15 15 0.0049 4.6 6.9 0.1 3 13 671 681 669 690 0.81 Ubiquitin-Binding Zinc Finger zf-C2H2_6 PF13912.6 27 ZNF175-201 - 711 5.5e-09 35.8 95.1 1 15 0.34 3.3e+02 1.5 0.3 4 11 281 288 280 290 0.89 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF175-201 - 711 5.5e-09 35.8 95.1 2 15 0.09 85 3.3 0.1 2 11 307 316 306 317 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF175-201 - 711 5.5e-09 35.8 95.1 3 15 0.0011 1 9.4 0.7 3 24 336 357 336 360 0.86 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF175-201 - 711 5.5e-09 35.8 95.1 4 15 0.087 82 3.4 3.2 2 26 363 387 363 388 0.90 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF175-201 - 711 5.5e-09 35.8 95.1 5 15 0.00063 0.59 10.2 0.3 2 12 391 401 390 404 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF175-201 - 711 5.5e-09 35.8 95.1 6 15 0.0056 5.3 7.2 0.3 2 11 419 428 418 430 0.90 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF175-201 - 711 5.5e-09 35.8 95.1 7 15 2.4 2.2e+03 -1.2 0.1 2 11 447 456 446 457 0.87 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF175-201 - 711 5.5e-09 35.8 95.1 8 15 0.046 43 4.3 0.8 2 11 475 484 475 486 0.91 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF175-201 - 711 5.5e-09 35.8 95.1 9 15 0.0077 7.3 6.7 0.5 2 12 503 513 503 523 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF175-201 - 711 5.5e-09 35.8 95.1 10 15 0.00061 0.57 10.2 0.9 1 12 530 541 530 542 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF175-201 - 711 5.5e-09 35.8 95.1 11 15 0.00075 0.71 9.9 1.5 2 13 559 570 559 571 0.95 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF175-201 - 711 5.5e-09 35.8 95.1 12 15 0.0027 2.6 8.2 0.2 2 12 587 597 587 598 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF175-201 - 711 5.5e-09 35.8 95.1 13 15 0.00087 0.82 9.7 0.6 2 26 615 639 615 640 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF175-201 - 711 5.5e-09 35.8 95.1 14 15 0.13 1.2e+02 2.8 0.7 2 12 643 653 643 654 0.91 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF175-201 - 711 5.5e-09 35.8 95.1 15 15 0.0015 1.4 9.0 1.1 2 24 671 693 671 695 0.76 C2H2-type zinc finger # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF175-201.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF175-201.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF175-201.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF175-201.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF175-201.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:00:47 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- KRAB PF01352.27 42 ZNF175-202 - 112 4.4e-24 83.9 0.3 1 1 3.7e-28 6.6e-24 83.3 0.3 1 42 26 67 26 67 0.98 KRAB box # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF175-202.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF175-202.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF175-202.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF175-202.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF175-202.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:00:48 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF175-203.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF175-203.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF175-203.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF175-203.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF175-203.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:00:48 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- KRAB PF01352.27 42 ZNF175-204 - 70 1.5e-24 85.4 0.3 1 1 1.1e-28 2.1e-24 84.9 0.3 1 42 26 67 26 67 0.98 KRAB box # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF175-204.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF175-204.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF175-204.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF175-204.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF175-204.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:00:48 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF175-205.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF175-205.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF175-205.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF175-205.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF175-205.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:00:49 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZNF180-201 - 692 5.9e-106 342.6 87.5 1 13 0.00012 0.08 13.4 0.2 12 25 350 363 344 363 0.88 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF180-201 - 692 5.9e-106 342.6 87.5 2 13 2.2e-12 1.5e-09 37.8 1.2 1 25 367 391 367 392 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF180-201 - 692 5.9e-106 342.6 87.5 3 13 4.3e-11 3e-08 33.7 1.4 1 25 395 419 395 420 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF180-201 - 692 5.9e-106 342.6 87.5 4 13 8.4e-11 5.8e-08 32.8 0.4 2 25 424 447 424 448 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF180-201 - 692 5.9e-106 342.6 87.5 5 13 8.9e-11 6.1e-08 32.7 0.3 2 24 452 474 451 476 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF180-201 - 692 5.9e-106 342.6 87.5 6 13 6e-11 4.1e-08 33.3 0.2 2 25 480 503 479 504 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF180-201 - 692 5.9e-106 342.6 87.5 7 13 4.2e-11 2.9e-08 33.8 0.5 2 25 508 531 507 531 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF180-201 - 692 5.9e-106 342.6 87.5 8 13 2.6e-12 1.8e-09 37.6 0.4 2 25 536 559 535 560 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF180-201 - 692 5.9e-106 342.6 87.5 9 13 1.7e-11 1.2e-08 35.0 0.6 1 25 563 587 563 588 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF180-201 - 692 5.9e-106 342.6 87.5 10 13 2.3e-11 1.6e-08 34.6 0.4 2 25 592 615 592 616 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF180-201 - 692 5.9e-106 342.6 87.5 11 13 4.6e-11 3.2e-08 33.6 0.8 2 25 620 643 620 643 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF180-201 - 692 5.9e-106 342.6 87.5 12 13 1.9e-10 1.3e-07 31.7 0.1 4 25 650 671 647 672 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF180-201 - 692 5.9e-106 342.6 87.5 13 13 0.0002 0.14 12.7 0.3 2 17 676 691 675 692 0.93 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZNF180-201 - 692 2.2e-76 248.3 89.8 1 12 7.2e-08 5e-05 23.5 1.4 1 23 353 375 353 375 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF180-201 - 692 2.2e-76 248.3 89.8 2 12 2.9e-10 2e-07 31.1 2.8 1 23 381 403 381 403 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF180-201 - 692 2.2e-76 248.3 89.8 3 12 7.2e-09 5e-06 26.7 1.2 1 23 409 431 409 431 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF180-201 - 692 2.2e-76 248.3 89.8 4 12 3.3e-09 2.3e-06 27.7 1.2 1 23 437 459 437 459 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF180-201 - 692 2.2e-76 248.3 89.8 5 12 1.6e-08 1.1e-05 25.6 0.3 1 23 465 487 465 487 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF180-201 - 692 2.2e-76 248.3 89.8 6 12 2.1e-09 1.4e-06 28.4 1.0 1 23 493 515 493 515 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF180-201 - 692 2.2e-76 248.3 89.8 7 12 8.1e-08 5.6e-05 23.4 0.4 1 23 521 543 521 543 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF180-201 - 692 2.2e-76 248.3 89.8 8 12 2.1e-09 1.5e-06 28.4 1.9 1 23 549 571 549 571 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF180-201 - 692 2.2e-76 248.3 89.8 9 12 9.3e-09 6.4e-06 26.3 0.6 1 23 577 599 577 599 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF180-201 - 692 2.2e-76 248.3 89.8 10 12 3.2e-08 2.2e-05 24.7 4.3 1 23 605 627 605 627 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF180-201 - 692 2.2e-76 248.3 89.8 11 12 6.7e-07 0.00046 20.5 0.4 1 23 633 655 633 655 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF180-201 - 692 2.2e-76 248.3 89.8 12 12 4e-06 0.0027 18.0 0.3 1 23 661 683 661 683 0.96 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZNF180-201 - 692 2.4e-44 146.1 93.5 1 12 4.8e-05 0.033 15.0 1.8 1 23 353 375 353 376 0.90 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF180-201 - 692 2.4e-44 146.1 93.5 2 12 2.8e-06 0.0019 18.8 2.6 1 23 381 403 381 404 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF180-201 - 692 2.4e-44 146.1 93.5 3 12 8.6e-06 0.0059 17.3 1.1 1 23 409 431 409 432 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF180-201 - 692 2.4e-44 146.1 93.5 4 12 1.8e-06 0.0012 19.5 0.9 1 23 437 459 437 460 0.97 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF180-201 - 692 2.4e-44 146.1 93.5 5 12 2e-05 0.014 16.2 0.3 1 23 465 487 465 488 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF180-201 - 692 2.4e-44 146.1 93.5 6 12 1.1e-06 0.00075 20.1 1.0 1 23 493 515 493 516 0.97 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF180-201 - 692 2.4e-44 146.1 93.5 7 12 2.3e-05 0.016 16.0 0.7 1 23 521 543 521 544 0.91 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF180-201 - 692 2.4e-44 146.1 93.5 8 12 5.1e-05 0.035 14.9 1.5 1 23 549 571 549 572 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF180-201 - 692 2.4e-44 146.1 93.5 9 12 7.5e-06 0.0051 17.5 0.8 1 23 577 599 577 600 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF180-201 - 692 2.4e-44 146.1 93.5 10 12 1.4e-05 0.0097 16.7 3.8 1 23 605 627 605 628 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF180-201 - 692 2.4e-44 146.1 93.5 11 12 8.1e-06 0.0056 17.4 0.5 1 23 633 655 633 656 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF180-201 - 692 2.4e-44 146.1 93.5 12 12 1.4e-05 0.0093 16.7 0.3 1 23 661 683 661 684 0.97 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF180-201 - 692 9.2e-27 92.5 89.8 1 12 0.00057 0.39 10.8 1.0 2 12 353 363 353 377 0.77 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF180-201 - 692 9.2e-27 92.5 89.8 2 12 7.7e-05 0.053 13.5 3.2 2 24 381 403 381 406 0.91 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF180-201 - 692 9.2e-27 92.5 89.8 3 12 4.4e-05 0.03 14.3 1.1 2 24 409 431 409 434 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF180-201 - 692 9.2e-27 92.5 89.8 4 12 2.8e-06 0.0019 18.1 1.5 2 24 437 459 437 462 0.95 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF180-201 - 692 9.2e-27 92.5 89.8 5 12 0.0004 0.27 11.3 0.4 2 20 465 483 465 489 0.78 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF180-201 - 692 9.2e-27 92.5 89.8 6 12 2.8e-05 0.019 14.9 2.0 2 24 493 515 493 518 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF180-201 - 692 9.2e-27 92.5 89.8 7 12 0.00032 0.22 11.6 0.6 2 24 521 543 521 546 0.76 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF180-201 - 692 9.2e-27 92.5 89.8 8 12 7.2e-05 0.05 13.6 0.9 2 13 549 560 549 572 0.79 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF180-201 - 692 9.2e-27 92.5 89.8 9 12 2.4e-05 0.016 15.2 1.0 2 24 577 599 577 602 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF180-201 - 692 9.2e-27 92.5 89.8 10 12 0.0009 0.62 10.1 3.9 2 24 605 627 605 630 0.81 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF180-201 - 692 9.2e-27 92.5 89.8 11 12 0.00058 0.4 10.7 0.2 2 12 633 643 633 657 0.84 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF180-201 - 692 9.2e-27 92.5 89.8 12 12 0.16 1.1e+02 3.0 0.3 2 24 661 683 661 686 0.82 C2H2-type zinc finger Zn-ribbon_8 PF09723.10 40 ZNF180-201 - 692 1.1e-16 60.7 56.8 1 11 0.014 9.4 6.5 1.5 6 34 329 360 328 363 0.70 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF180-201 - 692 1.1e-16 60.7 56.8 2 11 8.1e-05 0.056 13.6 3.3 6 38 353 392 352 394 0.90 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF180-201 - 692 1.1e-16 60.7 56.8 3 11 0.0091 6.2 7.0 0.5 6 17 381 392 380 401 0.84 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF180-201 - 692 1.1e-16 60.7 56.8 4 11 3.2e-06 0.0022 18.1 2.4 6 37 409 447 408 450 0.90 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF180-201 - 692 1.1e-16 60.7 56.8 5 11 0.00021 0.14 12.3 4.2 6 34 437 472 436 477 0.91 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF180-201 - 692 1.1e-16 60.7 56.8 6 11 0.00018 0.12 12.5 4.2 6 35 465 501 464 506 0.91 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF180-201 - 692 1.1e-16 60.7 56.8 7 11 0.00022 0.15 12.2 3.4 6 34 493 528 492 532 0.89 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF180-201 - 692 1.1e-16 60.7 56.8 8 11 9.5e-05 0.065 13.4 3.3 6 38 521 560 520 562 0.89 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF180-201 - 692 1.1e-16 60.7 56.8 9 11 8e-05 0.055 13.6 4.4 6 35 549 585 548 589 0.86 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF180-201 - 692 1.1e-16 60.7 56.8 10 11 1e-05 0.0069 16.5 2.5 6 37 577 615 576 617 0.90 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF180-201 - 692 1.1e-16 60.7 56.8 11 11 0.00016 0.11 12.7 0.8 6 34 633 668 632 671 0.89 Zinc ribbon domain KRAB PF01352.27 42 ZNF180-201 - 692 1.2e-15 56.8 0.0 1 1 3.6e-18 2.5e-15 55.8 0.0 2 42 72 112 71 112 0.97 KRAB box CpXC PF14353.6 118 ZNF180-201 - 692 4.7e-13 49.2 44.1 1 11 0.0042 2.9 8.0 0.1 20 60 334 375 323 377 0.77 CpXC protein CpXC PF14353.6 118 ZNF180-201 - 692 4.7e-13 49.2 44.1 2 11 0.14 96 3.0 0.1 38 60 381 403 379 405 0.87 CpXC protein CpXC PF14353.6 118 ZNF180-201 - 692 4.7e-13 49.2 44.1 3 11 0.0073 5 7.2 0.1 38 60 409 431 407 433 0.91 CpXC protein CpXC PF14353.6 118 ZNF180-201 - 692 4.7e-13 49.2 44.1 4 11 0.0044 3 7.9 0.2 38 60 437 459 435 461 0.91 CpXC protein CpXC PF14353.6 118 ZNF180-201 - 692 4.7e-13 49.2 44.1 5 11 0.029 20 5.2 0.1 38 58 465 485 463 489 0.89 CpXC protein CpXC PF14353.6 118 ZNF180-201 - 692 4.7e-13 49.2 44.1 6 11 0.0047 3.3 7.8 0.2 38 60 493 515 486 517 0.91 CpXC protein CpXC PF14353.6 118 ZNF180-201 - 692 4.7e-13 49.2 44.1 7 11 0.011 7.4 6.6 0.0 38 60 521 543 519 545 0.91 CpXC protein CpXC PF14353.6 118 ZNF180-201 - 692 4.7e-13 49.2 44.1 8 11 0.0062 4.2 7.4 0.9 27 60 567 599 550 601 0.76 CpXC protein CpXC PF14353.6 118 ZNF180-201 - 692 4.7e-13 49.2 44.1 9 11 0.38 2.6e+02 1.6 0.7 38 59 605 626 603 629 0.79 CpXC protein CpXC PF14353.6 118 ZNF180-201 - 692 4.7e-13 49.2 44.1 10 11 0.00067 0.46 10.5 0.1 38 60 633 655 631 657 0.92 CpXC protein CpXC PF14353.6 118 ZNF180-201 - 692 4.7e-13 49.2 44.1 11 11 0.031 22 5.1 0.1 38 60 661 683 659 689 0.90 CpXC protein zf-C2H2_jaz PF12171.8 27 ZNF180-201 - 692 1.5e-11 44.3 66.5 1 12 0.017 12 6.4 0.5 2 24 353 375 352 375 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF180-201 - 692 1.5e-11 44.3 66.5 2 12 0.0002 0.14 12.5 0.5 2 24 381 403 380 403 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF180-201 - 692 1.5e-11 44.3 66.5 3 12 0.0095 6.5 7.2 0.3 2 24 409 431 408 431 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF180-201 - 692 1.5e-11 44.3 66.5 4 12 0.065 45 4.5 0.7 2 24 437 459 436 459 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF180-201 - 692 1.5e-11 44.3 66.5 5 12 0.083 57 4.2 0.3 2 22 465 485 464 485 0.90 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF180-201 - 692 1.5e-11 44.3 66.5 6 12 0.013 8.8 6.8 0.8 2 24 493 515 492 515 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF180-201 - 692 1.5e-11 44.3 66.5 7 12 0.0015 1 9.7 0.3 2 24 521 543 520 543 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF180-201 - 692 1.5e-11 44.3 66.5 8 12 0.00081 0.56 10.6 0.1 2 22 549 569 548 569 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF180-201 - 692 1.5e-11 44.3 66.5 9 12 0.006 4.1 7.8 0.3 2 24 577 599 576 599 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF180-201 - 692 1.5e-11 44.3 66.5 10 12 0.28 1.9e+02 2.5 1.7 2 24 605 627 604 627 0.89 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF180-201 - 692 1.5e-11 44.3 66.5 11 12 0.1 69 3.9 0.1 2 23 633 654 632 655 0.79 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF180-201 - 692 1.5e-11 44.3 66.5 12 12 0.00065 0.45 10.9 0.2 2 23 661 682 660 683 0.91 Zinc-finger double-stranded RNA-binding zf_UBZ PF18439.1 32 ZNF180-201 - 692 1.6e-11 43.5 49.4 1 12 0.043 30 4.3 0.1 3 13 353 363 351 372 0.82 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF180-201 - 692 1.6e-11 43.5 49.4 2 12 0.0011 0.73 9.5 0.4 3 20 381 399 379 400 0.83 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF180-201 - 692 1.6e-11 43.5 49.4 3 12 0.017 12 5.6 0.1 3 14 409 420 407 424 0.87 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF180-201 - 692 1.6e-11 43.5 49.4 4 12 0.015 10 5.8 0.1 3 20 437 455 435 456 0.83 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF180-201 - 692 1.6e-11 43.5 49.4 5 12 0.011 7.6 6.2 0.1 3 21 465 484 463 484 0.84 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF180-201 - 692 1.6e-11 43.5 49.4 6 12 0.0036 2.5 7.8 0.1 3 21 493 512 491 512 0.86 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF180-201 - 692 1.6e-11 43.5 49.4 7 12 0.02 14 5.4 0.1 3 20 521 539 519 540 0.78 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF180-201 - 692 1.6e-11 43.5 49.4 8 12 0.006 4.2 7.1 0.1 3 14 549 560 547 565 0.84 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF180-201 - 692 1.6e-11 43.5 49.4 9 12 0.017 12 5.6 0.1 3 14 577 588 575 592 0.87 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF180-201 - 692 1.6e-11 43.5 49.4 10 12 0.0088 6.1 6.5 1.3 3 20 605 623 603 624 0.79 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF180-201 - 692 1.6e-11 43.5 49.4 11 12 0.016 11 5.7 0.0 3 17 633 647 631 651 0.87 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF180-201 - 692 1.6e-11 43.5 49.4 12 12 0.19 1.3e+02 2.3 0.1 3 14 661 672 659 680 0.77 Ubiquitin-Binding Zinc Finger zf_C2H2_13 PF18508.1 42 ZNF180-201 - 692 3.9e-10 39.1 32.2 1 13 0.53 3.6e+02 0.8 0.1 21 26 249 254 248 262 0.81 Zinc finger domain zf_C2H2_13 PF18508.1 42 ZNF180-201 - 692 3.9e-10 39.1 32.2 2 13 0.01 7.1 6.3 0.0 20 39 355 375 354 377 0.80 Zinc finger domain zf_C2H2_13 PF18508.1 42 ZNF180-201 - 692 3.9e-10 39.1 32.2 3 13 0.4 2.7e+02 1.2 0.0 20 39 383 403 382 406 0.74 Zinc finger domain zf_C2H2_13 PF18508.1 42 ZNF180-201 - 692 3.9e-10 39.1 32.2 4 13 0.012 8.3 6.1 0.1 17 36 409 428 405 432 0.72 Zinc finger domain zf_C2H2_13 PF18508.1 42 ZNF180-201 - 692 3.9e-10 39.1 32.2 5 13 0.045 31 4.3 0.0 20 36 439 456 438 460 0.69 Zinc finger domain zf_C2H2_13 PF18508.1 42 ZNF180-201 - 692 3.9e-10 39.1 32.2 6 13 0.016 11 5.7 0.1 20 38 467 486 466 488 0.81 Zinc finger domain zf_C2H2_13 PF18508.1 42 ZNF180-201 - 692 3.9e-10 39.1 32.2 7 13 0.016 11 5.7 0.0 20 39 495 515 494 517 0.79 Zinc finger domain zf_C2H2_13 PF18508.1 42 ZNF180-201 - 692 3.9e-10 39.1 32.2 8 13 0.0097 6.7 6.4 0.0 20 39 523 543 522 545 0.80 Zinc finger domain zf_C2H2_13 PF18508.1 42 ZNF180-201 - 692 3.9e-10 39.1 32.2 9 13 1.9 1.3e+03 -0.9 0.1 20 26 551 557 551 571 0.77 Zinc finger domain zf_C2H2_13 PF18508.1 42 ZNF180-201 - 692 3.9e-10 39.1 32.2 10 13 0.027 19 5.0 0.0 20 36 579 596 578 600 0.71 Zinc finger domain zf_C2H2_13 PF18508.1 42 ZNF180-201 - 692 3.9e-10 39.1 32.2 11 13 1 7.2e+02 -0.1 0.2 20 26 607 613 606 627 0.79 Zinc finger domain zf_C2H2_13 PF18508.1 42 ZNF180-201 - 692 3.9e-10 39.1 32.2 12 13 0.0056 3.9 7.2 0.0 20 35 635 651 634 656 0.79 Zinc finger domain zf_C2H2_13 PF18508.1 42 ZNF180-201 - 692 3.9e-10 39.1 32.2 13 13 0.95 6.5e+02 0.0 0.1 20 38 663 682 662 685 0.74 Zinc finger domain XPA_N PF01286.18 32 ZNF180-201 - 692 4.1e-09 36.3 67.0 1 12 0.12 85 3.3 0.3 3 14 354 365 352 368 0.87 XPA protein N-terminal XPA_N PF01286.18 32 ZNF180-201 - 692 4.1e-09 36.3 67.0 2 12 0.011 7.7 6.7 0.2 3 14 382 393 380 397 0.90 XPA protein N-terminal XPA_N PF01286.18 32 ZNF180-201 - 692 4.1e-09 36.3 67.0 3 12 0.002 1.4 9.0 0.0 3 15 410 422 408 426 0.90 XPA protein N-terminal XPA_N PF01286.18 32 ZNF180-201 - 692 4.1e-09 36.3 67.0 4 12 0.0044 3.1 7.9 0.3 3 15 438 450 436 452 0.94 XPA protein N-terminal XPA_N PF01286.18 32 ZNF180-201 - 692 4.1e-09 36.3 67.0 5 12 0.0043 2.9 8.0 0.3 3 15 466 478 464 480 0.94 XPA protein N-terminal XPA_N PF01286.18 32 ZNF180-201 - 692 4.1e-09 36.3 67.0 6 12 0.0036 2.5 8.2 0.6 3 15 494 506 492 508 0.94 XPA protein N-terminal XPA_N PF01286.18 32 ZNF180-201 - 692 4.1e-09 36.3 67.0 7 12 0.11 72 3.5 0.2 3 14 522 533 520 538 0.86 XPA protein N-terminal XPA_N PF01286.18 32 ZNF180-201 - 692 4.1e-09 36.3 67.0 8 12 0.014 9.6 6.3 0.3 3 14 550 561 548 564 0.89 XPA protein N-terminal XPA_N PF01286.18 32 ZNF180-201 - 692 4.1e-09 36.3 67.0 9 12 0.0015 1 9.4 0.1 3 15 578 590 576 594 0.90 XPA protein N-terminal XPA_N PF01286.18 32 ZNF180-201 - 692 4.1e-09 36.3 67.0 10 12 0.083 57 3.9 1.5 3 14 606 617 604 622 0.88 XPA protein N-terminal XPA_N PF01286.18 32 ZNF180-201 - 692 4.1e-09 36.3 67.0 11 12 0.058 40 4.4 0.3 3 14 634 645 632 646 0.89 XPA protein N-terminal XPA_N PF01286.18 32 ZNF180-201 - 692 4.1e-09 36.3 67.0 12 12 0.0023 1.6 8.8 0.1 3 15 662 674 660 676 0.94 XPA protein N-terminal zf-trcl PF13451.6 48 ZNF180-201 - 692 9.9e-08 31.8 40.8 1 12 0.003 2.1 8.3 0.1 2 18 350 366 349 368 0.89 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF180-201 - 692 9.9e-08 31.8 40.8 2 12 0.16 1.1e+02 2.8 0.1 3 14 379 390 377 395 0.89 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF180-201 - 692 9.9e-08 31.8 40.8 3 12 0.1 72 3.4 0.1 3 14 407 418 401 421 0.79 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF180-201 - 692 9.9e-08 31.8 40.8 4 12 0.15 1e+02 2.9 0.1 3 14 435 446 433 448 0.89 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF180-201 - 692 9.9e-08 31.8 40.8 5 12 0.031 21 5.1 0.1 3 15 463 475 461 479 0.89 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF180-201 - 692 9.9e-08 31.8 40.8 6 12 0.13 87 3.1 0.1 3 14 491 502 489 505 0.89 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF180-201 - 692 9.9e-08 31.8 40.8 7 12 0.0033 2.3 8.2 0.1 3 18 519 534 517 540 0.90 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF180-201 - 692 9.9e-08 31.8 40.8 8 12 0.17 1.2e+02 2.7 0.1 3 14 547 558 545 561 0.89 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF180-201 - 692 9.9e-08 31.8 40.8 9 12 0.13 87 3.1 0.1 3 14 575 586 573 589 0.89 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF180-201 - 692 9.9e-08 31.8 40.8 10 12 0.16 1.1e+02 2.8 0.1 3 14 603 614 601 617 0.89 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF180-201 - 692 9.9e-08 31.8 40.8 11 12 0.043 30 4.6 0.1 3 16 631 644 629 647 0.83 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF180-201 - 692 9.9e-08 31.8 40.8 12 12 0.022 15 5.6 0.1 3 15 659 671 657 675 0.89 Probable zinc-ribbon domain # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF180-201.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF180-201.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF180-201.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF180-201.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF180-201.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:00:49 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZNF180-202 - 667 3.3e-106 343.4 87.5 1 13 0.00012 0.077 13.5 0.2 12 25 325 338 319 338 0.88 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF180-202 - 667 3.3e-106 343.4 87.5 2 13 2.2e-12 1.4e-09 37.9 1.2 1 25 342 366 342 367 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF180-202 - 667 3.3e-106 343.4 87.5 3 13 4.3e-11 2.8e-08 33.8 1.4 1 25 370 394 370 395 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF180-202 - 667 3.3e-106 343.4 87.5 4 13 8.3e-11 5.5e-08 32.9 0.4 2 25 399 422 399 423 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF180-202 - 667 3.3e-106 343.4 87.5 5 13 8.8e-11 5.9e-08 32.8 0.3 2 24 427 449 426 451 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF180-202 - 667 3.3e-106 343.4 87.5 6 13 6e-11 4e-08 33.3 0.2 2 25 455 478 454 479 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF180-202 - 667 3.3e-106 343.4 87.5 7 13 4.2e-11 2.8e-08 33.8 0.5 2 25 483 506 482 506 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF180-202 - 667 3.3e-106 343.4 87.5 8 13 2.5e-12 1.7e-09 37.7 0.4 2 25 511 534 510 535 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF180-202 - 667 3.3e-106 343.4 87.5 9 13 1.7e-11 1.1e-08 35.1 0.6 1 25 538 562 538 563 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF180-202 - 667 3.3e-106 343.4 87.5 10 13 2.3e-11 1.5e-08 34.6 0.4 2 25 567 590 567 591 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF180-202 - 667 3.3e-106 343.4 87.5 11 13 4.6e-11 3.1e-08 33.7 0.8 2 25 595 618 595 618 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF180-202 - 667 3.3e-106 343.4 87.5 12 13 1.9e-10 1.2e-07 31.8 0.1 4 25 625 646 622 647 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF180-202 - 667 3.3e-106 343.4 87.5 13 13 0.0002 0.13 12.7 0.3 2 17 651 666 650 667 0.93 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZNF180-202 - 667 1.3e-76 249.0 89.8 1 12 7.2e-08 4.8e-05 23.6 1.4 1 23 328 350 328 350 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF180-202 - 667 1.3e-76 249.0 89.8 2 12 2.9e-10 1.9e-07 31.1 2.8 1 23 356 378 356 378 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF180-202 - 667 1.3e-76 249.0 89.8 3 12 7.2e-09 4.8e-06 26.7 1.2 1 23 384 406 384 406 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF180-202 - 667 1.3e-76 249.0 89.8 4 12 3.3e-09 2.2e-06 27.8 1.2 1 23 412 434 412 434 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF180-202 - 667 1.3e-76 249.0 89.8 5 12 1.6e-08 1.1e-05 25.6 0.3 1 23 440 462 440 462 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF180-202 - 667 1.3e-76 249.0 89.8 6 12 2e-09 1.4e-06 28.5 1.0 1 23 468 490 468 490 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF180-202 - 667 1.3e-76 249.0 89.8 7 12 8.1e-08 5.4e-05 23.4 0.4 1 23 496 518 496 518 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF180-202 - 667 1.3e-76 249.0 89.8 8 12 2.1e-09 1.4e-06 28.4 1.9 1 23 524 546 524 546 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF180-202 - 667 1.3e-76 249.0 89.8 9 12 9.2e-09 6.1e-06 26.4 0.6 1 23 552 574 552 574 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF180-202 - 667 1.3e-76 249.0 89.8 10 12 3.1e-08 2.1e-05 24.7 4.3 1 23 580 602 580 602 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF180-202 - 667 1.3e-76 249.0 89.8 11 12 6.7e-07 0.00044 20.5 0.4 1 23 608 630 608 630 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF180-202 - 667 1.3e-76 249.0 89.8 12 12 4e-06 0.0026 18.1 0.3 1 23 636 658 636 658 0.96 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZNF180-202 - 667 1.7e-42 140.4 100.0 1 12 4.8e-05 0.032 15.1 1.8 1 23 328 350 328 351 0.90 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF180-202 - 667 1.7e-42 140.4 100.0 2 12 2.8e-06 0.0019 18.9 2.6 1 23 356 378 356 379 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF180-202 - 667 1.7e-42 140.4 100.0 3 12 8.6e-06 0.0057 17.4 1.1 1 23 384 406 384 407 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF180-202 - 667 1.7e-42 140.4 100.0 4 12 1.8e-06 0.0012 19.5 0.9 1 23 412 434 412 435 0.97 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF180-202 - 667 1.7e-42 140.4 100.0 5 12 2e-05 0.013 16.3 0.3 1 23 440 462 440 463 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF180-202 - 667 1.7e-42 140.4 100.0 6 12 1.1e-06 0.00072 20.2 1.0 1 23 468 490 468 491 0.97 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF180-202 - 667 1.7e-42 140.4 100.0 7 12 2.3e-05 0.015 16.0 0.7 1 23 496 518 496 519 0.91 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF180-202 - 667 1.7e-42 140.4 100.0 8 12 5.1e-05 0.034 15.0 1.5 1 23 524 546 524 547 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF180-202 - 667 1.7e-42 140.4 100.0 9 12 7.4e-06 0.0049 17.6 0.8 1 23 552 574 552 575 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF180-202 - 667 1.7e-42 140.4 100.0 10 12 1.4e-05 0.0093 16.7 3.8 1 23 580 602 580 603 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF180-202 - 667 1.7e-42 140.4 100.0 11 12 8e-06 0.0053 17.5 0.5 1 23 608 630 608 631 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF180-202 - 667 1.7e-42 140.4 100.0 12 12 1.3e-05 0.0089 16.8 0.3 1 23 636 658 636 659 0.97 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF180-202 - 667 5.5e-27 93.2 89.8 1 12 0.00057 0.38 10.8 1.0 2 12 328 338 328 352 0.77 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF180-202 - 667 5.5e-27 93.2 89.8 2 12 7.7e-05 0.051 13.6 3.2 2 24 356 378 356 381 0.91 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF180-202 - 667 5.5e-27 93.2 89.8 3 12 4.4e-05 0.029 14.4 1.1 2 24 384 406 384 409 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF180-202 - 667 5.5e-27 93.2 89.8 4 12 2.8e-06 0.0018 18.2 1.5 2 24 412 434 412 437 0.95 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF180-202 - 667 5.5e-27 93.2 89.8 5 12 0.0004 0.26 11.3 0.4 2 20 440 458 440 464 0.78 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF180-202 - 667 5.5e-27 93.2 89.8 6 12 2.8e-05 0.018 15.0 2.0 2 24 468 490 468 493 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF180-202 - 667 5.5e-27 93.2 89.8 7 12 0.00032 0.21 11.6 0.6 2 24 496 518 496 521 0.76 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF180-202 - 667 5.5e-27 93.2 89.8 8 12 7.2e-05 0.048 13.7 0.9 2 13 524 535 524 547 0.79 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF180-202 - 667 5.5e-27 93.2 89.8 9 12 2.4e-05 0.016 15.2 1.0 2 24 552 574 552 577 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF180-202 - 667 5.5e-27 93.2 89.8 10 12 0.00089 0.59 10.2 3.9 2 24 580 602 580 605 0.81 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF180-202 - 667 5.5e-27 93.2 89.8 11 12 0.00058 0.39 10.8 0.2 2 12 608 618 608 632 0.84 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF180-202 - 667 5.5e-27 93.2 89.8 12 12 0.16 1e+02 3.0 0.3 2 24 636 658 636 661 0.82 C2H2-type zinc finger Zn-ribbon_8 PF09723.10 40 ZNF180-202 - 667 9.8e-17 60.8 57.3 1 11 0.017 11 6.2 1.5 5 34 303 335 303 337 0.73 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF180-202 - 667 9.8e-17 60.8 57.3 2 11 9.7e-05 0.064 13.4 3.6 6 38 328 367 327 368 0.89 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF180-202 - 667 9.8e-17 60.8 57.3 3 11 0.0093 6.2 7.0 0.6 6 17 356 367 354 376 0.84 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF180-202 - 667 9.8e-17 60.8 57.3 4 11 3.1e-06 0.0021 18.2 2.4 6 37 384 422 383 425 0.90 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF180-202 - 667 9.8e-17 60.8 57.3 5 11 0.00018 0.12 12.5 4.1 6 34 412 447 411 452 0.91 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF180-202 - 667 9.8e-17 60.8 57.3 6 11 0.00018 0.12 12.6 4.1 6 35 440 476 439 481 0.91 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF180-202 - 667 9.8e-17 60.8 57.3 7 11 0.00057 0.38 10.9 4.7 6 34 468 503 467 506 0.89 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF180-202 - 667 9.8e-17 60.8 57.3 8 11 0.00011 0.07 13.3 3.5 6 38 496 535 495 537 0.89 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF180-202 - 667 9.8e-17 60.8 57.3 9 11 7.7e-05 0.051 13.7 4.4 6 35 524 560 522 564 0.87 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF180-202 - 667 9.8e-17 60.8 57.3 10 11 1.2e-05 0.0078 16.3 2.7 6 37 552 590 551 592 0.90 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF180-202 - 667 9.8e-17 60.8 57.3 11 11 0.00015 0.1 12.7 0.8 6 34 608 643 607 646 0.89 Zinc ribbon domain KRAB PF01352.27 42 ZNF180-202 - 667 1.1e-15 56.9 0.0 1 1 3.6e-18 2.4e-15 55.9 0.0 2 42 47 87 46 87 0.97 KRAB box CpXC PF14353.6 118 ZNF180-202 - 667 3e-13 49.9 44.2 1 11 0.0041 2.7 8.0 0.1 20 60 309 350 298 352 0.77 CpXC protein CpXC PF14353.6 118 ZNF180-202 - 667 3e-13 49.9 44.2 2 11 0.14 93 3.1 0.1 38 60 356 378 354 380 0.87 CpXC protein CpXC PF14353.6 118 ZNF180-202 - 667 3e-13 49.9 44.2 3 11 0.0072 4.8 7.2 0.1 38 60 384 406 382 408 0.91 CpXC protein CpXC PF14353.6 118 ZNF180-202 - 667 3e-13 49.9 44.2 4 11 0.0044 2.9 7.9 0.2 38 60 412 434 410 436 0.91 CpXC protein CpXC PF14353.6 118 ZNF180-202 - 667 3e-13 49.9 44.2 5 11 0.029 19 5.3 0.1 38 58 440 460 438 464 0.89 CpXC protein CpXC PF14353.6 118 ZNF180-202 - 667 3e-13 49.9 44.2 6 11 0.0047 3.1 7.9 0.2 38 60 468 490 461 492 0.91 CpXC protein CpXC PF14353.6 118 ZNF180-202 - 667 3e-13 49.9 44.2 7 11 0.011 7.1 6.7 0.0 38 60 496 518 494 520 0.91 CpXC protein CpXC PF14353.6 118 ZNF180-202 - 667 3e-13 49.9 44.2 8 11 0.0063 4.2 7.4 0.9 27 60 542 574 525 576 0.76 CpXC protein CpXC PF14353.6 118 ZNF180-202 - 667 3e-13 49.9 44.2 9 11 0.38 2.5e+02 1.7 0.7 38 59 580 601 578 604 0.79 CpXC protein CpXC PF14353.6 118 ZNF180-202 - 667 3e-13 49.9 44.2 10 11 0.00066 0.44 10.6 0.1 38 60 608 630 606 632 0.92 CpXC protein CpXC PF14353.6 118 ZNF180-202 - 667 3e-13 49.9 44.2 11 11 0.031 21 5.2 0.1 38 60 636 658 634 664 0.90 CpXC protein zf-C2H2_jaz PF12171.8 27 ZNF180-202 - 667 8.8e-12 45.0 66.5 1 12 0.017 11 6.4 0.5 2 24 328 350 327 350 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF180-202 - 667 8.8e-12 45.0 66.5 2 12 0.0002 0.13 12.5 0.5 2 24 356 378 355 378 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF180-202 - 667 8.8e-12 45.0 66.5 3 12 0.0094 6.3 7.2 0.3 2 24 384 406 383 406 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF180-202 - 667 8.8e-12 45.0 66.5 4 12 0.065 43 4.6 0.7 2 24 412 434 411 434 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF180-202 - 667 8.8e-12 45.0 66.5 5 12 0.082 55 4.2 0.3 2 22 440 460 439 460 0.90 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF180-202 - 667 8.8e-12 45.0 66.5 6 12 0.013 8.4 6.8 0.8 2 24 468 490 467 490 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF180-202 - 667 8.8e-12 45.0 66.5 7 12 0.0015 1 9.8 0.3 2 24 496 518 495 518 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF180-202 - 667 8.8e-12 45.0 66.5 8 12 0.00081 0.53 10.6 0.1 2 22 524 544 523 544 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF180-202 - 667 8.8e-12 45.0 66.5 9 12 0.006 4 7.9 0.3 2 24 552 574 551 574 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF180-202 - 667 8.8e-12 45.0 66.5 10 12 0.28 1.8e+02 2.6 1.7 2 24 580 602 579 602 0.89 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF180-202 - 667 8.8e-12 45.0 66.5 11 12 0.1 66 4.0 0.1 2 23 608 629 607 630 0.79 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF180-202 - 667 8.8e-12 45.0 66.5 12 12 0.00065 0.43 10.9 0.2 2 23 636 657 635 658 0.91 Zinc-finger double-stranded RNA-binding zf_UBZ PF18439.1 32 ZNF180-202 - 667 9.9e-12 44.2 49.4 1 12 0.043 29 4.4 0.1 3 13 328 338 326 347 0.82 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF180-202 - 667 9.9e-12 44.2 49.4 2 12 0.0011 0.7 9.5 0.4 3 20 356 374 354 375 0.83 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF180-202 - 667 9.9e-12 44.2 49.4 3 12 0.017 11 5.6 0.1 3 14 384 395 382 399 0.87 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF180-202 - 667 9.9e-12 44.2 49.4 4 12 0.015 9.8 5.9 0.1 3 20 412 430 410 431 0.83 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF180-202 - 667 9.9e-12 44.2 49.4 5 12 0.011 7.3 6.3 0.1 3 21 440 459 438 459 0.84 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF180-202 - 667 9.9e-12 44.2 49.4 6 12 0.0036 2.4 7.8 0.1 3 21 468 487 466 487 0.86 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF180-202 - 667 9.9e-12 44.2 49.4 7 12 0.02 13 5.4 0.1 3 20 496 514 494 515 0.78 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF180-202 - 667 9.9e-12 44.2 49.4 8 12 0.006 4 7.1 0.1 3 14 524 535 522 540 0.84 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF180-202 - 667 9.9e-12 44.2 49.4 9 12 0.017 11 5.7 0.1 3 14 552 563 550 567 0.87 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF180-202 - 667 9.9e-12 44.2 49.4 10 12 0.0088 5.8 6.6 1.3 3 20 580 598 578 599 0.79 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF180-202 - 667 9.9e-12 44.2 49.4 11 12 0.016 10 5.8 0.0 3 17 608 622 606 626 0.87 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF180-202 - 667 9.9e-12 44.2 49.4 12 12 0.19 1.3e+02 2.3 0.1 3 14 636 647 634 655 0.77 Ubiquitin-Binding Zinc Finger zf_C2H2_13 PF18508.1 42 ZNF180-202 - 667 2.1e-10 40.0 32.0 1 13 0.53 3.5e+02 0.9 0.1 21 26 224 229 223 237 0.81 Zinc finger domain zf_C2H2_13 PF18508.1 42 ZNF180-202 - 667 2.1e-10 40.0 32.0 2 13 0.0099 6.6 6.4 0.0 20 39 330 350 328 352 0.81 Zinc finger domain zf_C2H2_13 PF18508.1 42 ZNF180-202 - 667 2.1e-10 40.0 32.0 3 13 0.4 2.6e+02 1.3 0.1 20 39 358 378 357 381 0.74 Zinc finger domain zf_C2H2_13 PF18508.1 42 ZNF180-202 - 667 2.1e-10 40.0 32.0 4 13 0.012 7.8 6.2 0.2 17 36 384 403 379 407 0.73 Zinc finger domain zf_C2H2_13 PF18508.1 42 ZNF180-202 - 667 2.1e-10 40.0 32.0 5 13 0.045 30 4.3 0.0 20 36 414 431 413 435 0.69 Zinc finger domain zf_C2H2_13 PF18508.1 42 ZNF180-202 - 667 2.1e-10 40.0 32.0 6 13 0.016 11 5.7 0.1 20 38 442 461 441 463 0.81 Zinc finger domain zf_C2H2_13 PF18508.1 42 ZNF180-202 - 667 2.1e-10 40.0 32.0 7 13 0.016 11 5.7 0.0 20 39 470 490 469 492 0.79 Zinc finger domain zf_C2H2_13 PF18508.1 42 ZNF180-202 - 667 2.1e-10 40.0 32.0 8 13 0.0097 6.4 6.5 0.0 20 39 498 518 497 520 0.80 Zinc finger domain zf_C2H2_13 PF18508.1 42 ZNF180-202 - 667 2.1e-10 40.0 32.0 9 13 1.9 1.2e+03 -0.9 0.1 20 26 526 532 526 546 0.77 Zinc finger domain zf_C2H2_13 PF18508.1 42 ZNF180-202 - 667 2.1e-10 40.0 32.0 10 13 0.027 18 5.0 0.0 20 36 554 571 553 575 0.71 Zinc finger domain zf_C2H2_13 PF18508.1 42 ZNF180-202 - 667 2.1e-10 40.0 32.0 11 13 1 6.9e+02 -0.1 0.2 20 26 582 588 581 602 0.79 Zinc finger domain zf_C2H2_13 PF18508.1 42 ZNF180-202 - 667 2.1e-10 40.0 32.0 12 13 0.0056 3.7 7.2 0.0 20 35 610 626 609 631 0.79 Zinc finger domain zf_C2H2_13 PF18508.1 42 ZNF180-202 - 667 2.1e-10 40.0 32.0 13 13 0.94 6.3e+02 0.1 0.1 20 38 638 657 637 660 0.74 Zinc finger domain XPA_N PF01286.18 32 ZNF180-202 - 667 2.6e-09 37.0 67.0 1 12 0.12 81 3.4 0.3 3 14 329 340 327 343 0.87 XPA protein N-terminal XPA_N PF01286.18 32 ZNF180-202 - 667 2.6e-09 37.0 67.0 2 12 0.011 7.4 6.7 0.2 3 14 357 368 355 372 0.90 XPA protein N-terminal XPA_N PF01286.18 32 ZNF180-202 - 667 2.6e-09 37.0 67.0 3 12 0.002 1.3 9.1 0.0 3 15 385 397 383 401 0.90 XPA protein N-terminal XPA_N PF01286.18 32 ZNF180-202 - 667 2.6e-09 37.0 67.0 4 12 0.0044 2.9 8.0 0.3 3 15 413 425 411 427 0.94 XPA protein N-terminal XPA_N PF01286.18 32 ZNF180-202 - 667 2.6e-09 37.0 67.0 5 12 0.0042 2.8 8.1 0.3 3 15 441 453 439 455 0.94 XPA protein N-terminal XPA_N PF01286.18 32 ZNF180-202 - 667 2.6e-09 37.0 67.0 6 12 0.0036 2.4 8.3 0.6 3 15 469 481 467 483 0.94 XPA protein N-terminal XPA_N PF01286.18 32 ZNF180-202 - 667 2.6e-09 37.0 67.0 7 12 0.1 70 3.6 0.2 3 14 497 508 495 513 0.86 XPA protein N-terminal XPA_N PF01286.18 32 ZNF180-202 - 667 2.6e-09 37.0 67.0 8 12 0.014 9.2 6.4 0.3 3 14 525 536 523 539 0.89 XPA protein N-terminal XPA_N PF01286.18 32 ZNF180-202 - 667 2.6e-09 37.0 67.0 9 12 0.0015 0.99 9.5 0.1 3 15 553 565 551 569 0.90 XPA protein N-terminal XPA_N PF01286.18 32 ZNF180-202 - 667 2.6e-09 37.0 67.0 10 12 0.082 55 3.9 1.5 3 14 581 592 579 597 0.88 XPA protein N-terminal XPA_N PF01286.18 32 ZNF180-202 - 667 2.6e-09 37.0 67.0 11 12 0.058 39 4.4 0.3 3 14 609 620 607 621 0.89 XPA protein N-terminal XPA_N PF01286.18 32 ZNF180-202 - 667 2.6e-09 37.0 67.0 12 12 0.0023 1.5 8.9 0.1 3 15 637 649 635 651 0.94 XPA protein N-terminal zf-trcl PF13451.6 48 ZNF180-202 - 667 5.7e-08 32.5 40.7 1 12 0.003 2 8.4 0.1 2 18 325 341 324 343 0.89 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF180-202 - 667 5.7e-08 32.5 40.7 2 12 0.16 1.1e+02 2.8 0.1 3 14 354 365 352 369 0.89 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF180-202 - 667 5.7e-08 32.5 40.7 3 12 0.1 69 3.5 0.1 3 14 382 393 376 396 0.79 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF180-202 - 667 5.7e-08 32.5 40.7 4 12 0.15 99 3.0 0.1 3 14 410 421 408 423 0.89 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF180-202 - 667 5.7e-08 32.5 40.7 5 12 0.031 21 5.1 0.1 3 15 438 450 436 454 0.89 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF180-202 - 667 5.7e-08 32.5 40.7 6 12 0.13 84 3.2 0.1 3 14 466 477 464 480 0.89 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF180-202 - 667 5.7e-08 32.5 40.7 7 12 0.0033 2.2 8.2 0.1 3 18 494 509 492 514 0.90 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF180-202 - 667 5.7e-08 32.5 40.7 8 12 0.17 1.1e+02 2.8 0.1 3 14 522 533 520 536 0.89 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF180-202 - 667 5.7e-08 32.5 40.7 9 12 0.13 84 3.2 0.1 3 14 550 561 548 564 0.89 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF180-202 - 667 5.7e-08 32.5 40.7 10 12 0.16 1.1e+02 2.8 0.1 3 14 578 589 576 592 0.89 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF180-202 - 667 5.7e-08 32.5 40.7 11 12 0.043 29 4.7 0.1 3 16 606 619 604 622 0.83 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF180-202 - 667 5.7e-08 32.5 40.7 12 12 0.022 15 5.6 0.1 3 15 634 646 632 650 0.89 Probable zinc-ribbon domain zf-C2HE PF16278.5 64 ZNF180-202 - 667 5.9e-07 29.9 77.7 1 9 0.0014 0.93 10.0 2.4 7 47 298 337 292 351 0.75 C2HE / C2H2 / C2HC zinc-binding finger zf-C2HE PF16278.5 64 ZNF180-202 - 667 5.9e-07 29.9 77.7 2 9 0.1 68 4.0 5.1 23 49 370 395 340 400 0.77 C2HE / C2H2 / C2HC zinc-binding finger zf-C2HE PF16278.5 64 ZNF180-202 - 667 5.9e-07 29.9 77.7 3 9 0.0086 5.7 7.5 0.5 35 57 409 430 396 437 0.74 C2HE / C2H2 / C2HC zinc-binding finger zf-C2HE PF16278.5 64 ZNF180-202 - 667 5.9e-07 29.9 77.7 4 9 0.01 6.6 7.3 0.5 35 50 437 452 424 462 0.83 C2HE / C2H2 / C2HC zinc-binding finger zf-C2HE PF16278.5 64 ZNF180-202 - 667 5.9e-07 29.9 77.7 5 9 0.017 11 6.5 0.7 35 49 465 479 457 491 0.81 C2HE / C2H2 / C2HC zinc-binding finger zf-C2HE PF16278.5 64 ZNF180-202 - 667 5.9e-07 29.9 77.7 6 9 0.0059 3.9 8.0 1.0 34 48 492 506 479 519 0.78 C2HE / C2H2 / C2HC zinc-binding finger zf-C2HE PF16278.5 64 ZNF180-202 - 667 5.9e-07 29.9 77.7 7 9 0.4 2.7e+02 2.1 5.3 35 49 549 563 507 567 0.81 C2HE / C2H2 / C2HC zinc-binding finger zf-C2HE PF16278.5 64 ZNF180-202 - 667 5.9e-07 29.9 77.7 8 9 0.26 1.7e+02 2.7 7.2 28 47 599 617 564 630 0.79 C2HE / C2H2 / C2HC zinc-binding finger zf-C2HE PF16278.5 64 ZNF180-202 - 667 5.9e-07 29.9 77.7 9 9 0.0024 1.6 9.3 0.2 35 62 633 659 624 661 0.76 C2HE / C2H2 / C2HC zinc-binding finger # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF180-202.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF180-202.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF180-202.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF180-202.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF180-202.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:00:50 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF180-203.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF180-203.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF180-203.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF180-203.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF180-203.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:00:50 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF180-204.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF180-204.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF180-204.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF180-204.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF180-204.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:00:50 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF180-205.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF180-205.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF180-205.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF180-205.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF180-205.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:00:51 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZNF180-206 - 691 5.8e-106 342.6 87.5 1 13 0.00012 0.08 13.4 0.2 12 25 349 362 343 362 0.88 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF180-206 - 691 5.8e-106 342.6 87.5 2 13 2.2e-12 1.5e-09 37.8 1.2 1 25 366 390 366 391 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF180-206 - 691 5.8e-106 342.6 87.5 3 13 4.3e-11 3e-08 33.7 1.4 1 25 394 418 394 419 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF180-206 - 691 5.8e-106 342.6 87.5 4 13 8.4e-11 5.8e-08 32.8 0.4 2 25 423 446 423 447 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF180-206 - 691 5.8e-106 342.6 87.5 5 13 8.9e-11 6.1e-08 32.7 0.3 2 24 451 473 450 475 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF180-206 - 691 5.8e-106 342.6 87.5 6 13 6e-11 4.1e-08 33.3 0.2 2 25 479 502 478 503 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF180-206 - 691 5.8e-106 342.6 87.5 7 13 4.2e-11 2.9e-08 33.8 0.5 2 25 507 530 506 530 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF180-206 - 691 5.8e-106 342.6 87.5 8 13 2.6e-12 1.8e-09 37.6 0.4 2 25 535 558 534 559 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF180-206 - 691 5.8e-106 342.6 87.5 9 13 1.7e-11 1.2e-08 35.0 0.6 1 25 562 586 562 587 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF180-206 - 691 5.8e-106 342.6 87.5 10 13 2.3e-11 1.6e-08 34.6 0.4 2 25 591 614 591 615 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF180-206 - 691 5.8e-106 342.6 87.5 11 13 4.6e-11 3.2e-08 33.6 0.8 2 25 619 642 619 642 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF180-206 - 691 5.8e-106 342.6 87.5 12 13 1.9e-10 1.3e-07 31.7 0.1 4 25 649 670 646 671 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF180-206 - 691 5.8e-106 342.6 87.5 13 13 0.0002 0.14 12.7 0.3 2 17 675 690 674 691 0.93 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZNF180-206 - 691 2.2e-76 248.3 89.8 1 12 7.2e-08 5e-05 23.5 1.4 1 23 352 374 352 374 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF180-206 - 691 2.2e-76 248.3 89.8 2 12 2.9e-10 2e-07 31.1 2.8 1 23 380 402 380 402 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF180-206 - 691 2.2e-76 248.3 89.8 3 12 7.2e-09 5e-06 26.7 1.2 1 23 408 430 408 430 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF180-206 - 691 2.2e-76 248.3 89.8 4 12 3.3e-09 2.3e-06 27.8 1.2 1 23 436 458 436 458 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF180-206 - 691 2.2e-76 248.3 89.8 5 12 1.6e-08 1.1e-05 25.6 0.3 1 23 464 486 464 486 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF180-206 - 691 2.2e-76 248.3 89.8 6 12 2.1e-09 1.4e-06 28.4 1.0 1 23 492 514 492 514 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF180-206 - 691 2.2e-76 248.3 89.8 7 12 8.1e-08 5.6e-05 23.4 0.4 1 23 520 542 520 542 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF180-206 - 691 2.2e-76 248.3 89.8 8 12 2.1e-09 1.4e-06 28.4 1.9 1 23 548 570 548 570 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF180-206 - 691 2.2e-76 248.3 89.8 9 12 9.3e-09 6.4e-06 26.3 0.6 1 23 576 598 576 598 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF180-206 - 691 2.2e-76 248.3 89.8 10 12 3.2e-08 2.2e-05 24.7 4.3 1 23 604 626 604 626 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF180-206 - 691 2.2e-76 248.3 89.8 11 12 6.7e-07 0.00046 20.5 0.4 1 23 632 654 632 654 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF180-206 - 691 2.2e-76 248.3 89.8 12 12 4e-06 0.0027 18.1 0.3 1 23 660 682 660 682 0.96 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZNF180-206 - 691 2.3e-44 146.2 93.5 1 12 4.8e-05 0.033 15.0 1.8 1 23 352 374 352 375 0.90 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF180-206 - 691 2.3e-44 146.2 93.5 2 12 2.8e-06 0.0019 18.9 2.6 1 23 380 402 380 403 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF180-206 - 691 2.3e-44 146.2 93.5 3 12 8.6e-06 0.0059 17.3 1.1 1 23 408 430 408 431 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF180-206 - 691 2.3e-44 146.2 93.5 4 12 1.8e-06 0.0012 19.5 0.9 1 23 436 458 436 459 0.97 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF180-206 - 691 2.3e-44 146.2 93.5 5 12 2e-05 0.014 16.2 0.3 1 23 464 486 464 487 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF180-206 - 691 2.3e-44 146.2 93.5 6 12 1.1e-06 0.00075 20.1 1.0 1 23 492 514 492 515 0.97 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF180-206 - 691 2.3e-44 146.2 93.5 7 12 2.3e-05 0.016 16.0 0.7 1 23 520 542 520 543 0.91 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF180-206 - 691 2.3e-44 146.2 93.5 8 12 5.1e-05 0.035 14.9 1.5 1 23 548 570 548 571 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF180-206 - 691 2.3e-44 146.2 93.5 9 12 7.5e-06 0.0051 17.5 0.8 1 23 576 598 576 599 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF180-206 - 691 2.3e-44 146.2 93.5 10 12 1.4e-05 0.0097 16.7 3.8 1 23 604 626 604 627 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF180-206 - 691 2.3e-44 146.2 93.5 11 12 8.1e-06 0.0056 17.4 0.5 1 23 632 654 632 655 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF180-206 - 691 2.3e-44 146.2 93.5 12 12 1.3e-05 0.0093 16.7 0.3 1 23 660 682 660 683 0.97 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF180-206 - 691 9e-27 92.5 89.8 1 12 0.00057 0.39 10.8 1.0 2 12 352 362 352 376 0.77 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF180-206 - 691 9e-27 92.5 89.8 2 12 7.7e-05 0.053 13.5 3.2 2 24 380 402 380 405 0.91 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF180-206 - 691 9e-27 92.5 89.8 3 12 4.4e-05 0.03 14.3 1.1 2 24 408 430 408 433 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF180-206 - 691 9e-27 92.5 89.8 4 12 2.8e-06 0.0019 18.1 1.5 2 24 436 458 436 461 0.95 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF180-206 - 691 9e-27 92.5 89.8 5 12 0.0004 0.27 11.3 0.4 2 20 464 482 464 488 0.78 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF180-206 - 691 9e-27 92.5 89.8 6 12 2.8e-05 0.019 14.9 2.0 2 24 492 514 492 517 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF180-206 - 691 9e-27 92.5 89.8 7 12 0.00032 0.22 11.6 0.6 2 24 520 542 520 545 0.76 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF180-206 - 691 9e-27 92.5 89.8 8 12 7.2e-05 0.05 13.6 0.9 2 13 548 559 548 571 0.79 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF180-206 - 691 9e-27 92.5 89.8 9 12 2.4e-05 0.016 15.2 1.0 2 24 576 598 576 601 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF180-206 - 691 9e-27 92.5 89.8 10 12 0.0009 0.62 10.1 3.9 2 24 604 626 604 629 0.81 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF180-206 - 691 9e-27 92.5 89.8 11 12 0.00058 0.4 10.7 0.2 2 12 632 642 632 656 0.84 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF180-206 - 691 9e-27 92.5 89.8 12 12 0.16 1.1e+02 3.0 0.3 2 24 660 682 660 685 0.82 C2H2-type zinc finger Zn-ribbon_8 PF09723.10 40 ZNF180-206 - 691 1e-16 60.7 56.8 1 11 0.014 9.4 6.5 1.5 6 34 328 359 327 362 0.70 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF180-206 - 691 1e-16 60.7 56.8 2 11 8e-05 0.055 13.6 3.3 6 38 352 391 351 393 0.90 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF180-206 - 691 1e-16 60.7 56.8 3 11 0.009 6.2 7.0 0.5 6 17 380 391 379 400 0.84 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF180-206 - 691 1e-16 60.7 56.8 4 11 3.2e-06 0.0022 18.1 2.4 6 37 408 446 407 449 0.90 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF180-206 - 691 1e-16 60.7 56.8 5 11 0.00021 0.14 12.3 4.2 6 34 436 471 435 476 0.91 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF180-206 - 691 1e-16 60.7 56.8 6 11 0.00018 0.12 12.5 4.2 6 35 464 500 463 505 0.91 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF180-206 - 691 1e-16 60.7 56.8 7 11 0.00022 0.15 12.2 3.4 6 34 492 527 491 531 0.89 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF180-206 - 691 1e-16 60.7 56.8 8 11 9.4e-05 0.065 13.4 3.3 6 38 520 559 519 561 0.89 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF180-206 - 691 1e-16 60.7 56.8 9 11 8e-05 0.055 13.6 4.4 6 35 548 584 547 588 0.86 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF180-206 - 691 1e-16 60.7 56.8 10 11 1e-05 0.0069 16.5 2.5 6 37 576 614 575 616 0.90 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF180-206 - 691 1e-16 60.7 56.8 11 11 0.00015 0.11 12.7 0.8 6 34 632 667 631 670 0.89 Zinc ribbon domain KRAB PF01352.27 42 ZNF180-206 - 691 1.2e-15 56.9 0.0 1 1 3.6e-18 2.5e-15 55.9 0.0 2 42 71 111 70 111 0.97 KRAB box CpXC PF14353.6 118 ZNF180-206 - 691 4.6e-13 49.3 44.1 1 11 0.0041 2.9 8.0 0.1 20 60 333 374 322 376 0.77 CpXC protein CpXC PF14353.6 118 ZNF180-206 - 691 4.6e-13 49.3 44.1 2 11 0.14 96 3.1 0.1 38 60 380 402 378 404 0.87 CpXC protein CpXC PF14353.6 118 ZNF180-206 - 691 4.6e-13 49.3 44.1 3 11 0.0073 5 7.2 0.1 38 60 408 430 406 432 0.91 CpXC protein CpXC PF14353.6 118 ZNF180-206 - 691 4.6e-13 49.3 44.1 4 11 0.0044 3 7.9 0.2 38 60 436 458 434 460 0.91 CpXC protein CpXC PF14353.6 118 ZNF180-206 - 691 4.6e-13 49.3 44.1 5 11 0.029 20 5.3 0.1 38 58 464 484 462 488 0.89 CpXC protein CpXC PF14353.6 118 ZNF180-206 - 691 4.6e-13 49.3 44.1 6 11 0.0047 3.3 7.8 0.2 38 60 492 514 485 516 0.91 CpXC protein CpXC PF14353.6 118 ZNF180-206 - 691 4.6e-13 49.3 44.1 7 11 0.011 7.4 6.6 0.0 38 60 520 542 518 544 0.91 CpXC protein CpXC PF14353.6 118 ZNF180-206 - 691 4.6e-13 49.3 44.1 8 11 0.0062 4.2 7.4 0.9 27 60 566 598 549 600 0.76 CpXC protein CpXC PF14353.6 118 ZNF180-206 - 691 4.6e-13 49.3 44.1 9 11 0.38 2.6e+02 1.6 0.7 38 59 604 625 602 628 0.79 CpXC protein CpXC PF14353.6 118 ZNF180-206 - 691 4.6e-13 49.3 44.1 10 11 0.00066 0.46 10.5 0.1 38 60 632 654 630 656 0.92 CpXC protein CpXC PF14353.6 118 ZNF180-206 - 691 4.6e-13 49.3 44.1 11 11 0.031 22 5.1 0.1 38 60 660 682 658 688 0.90 CpXC protein zf-C2H2_jaz PF12171.8 27 ZNF180-206 - 691 1.4e-11 44.3 66.5 1 12 0.017 12 6.4 0.5 2 24 352 374 351 374 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF180-206 - 691 1.4e-11 44.3 66.5 2 12 0.0002 0.14 12.5 0.5 2 24 380 402 379 402 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF180-206 - 691 1.4e-11 44.3 66.5 3 12 0.0095 6.5 7.2 0.3 2 24 408 430 407 430 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF180-206 - 691 1.4e-11 44.3 66.5 4 12 0.065 45 4.5 0.7 2 24 436 458 435 458 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF180-206 - 691 1.4e-11 44.3 66.5 5 12 0.083 57 4.2 0.3 2 22 464 484 463 484 0.90 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF180-206 - 691 1.4e-11 44.3 66.5 6 12 0.013 8.8 6.8 0.8 2 24 492 514 491 514 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF180-206 - 691 1.4e-11 44.3 66.5 7 12 0.0015 1 9.7 0.3 2 24 520 542 519 542 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF180-206 - 691 1.4e-11 44.3 66.5 8 12 0.00081 0.56 10.6 0.1 2 22 548 568 547 568 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF180-206 - 691 1.4e-11 44.3 66.5 9 12 0.006 4.1 7.8 0.3 2 24 576 598 575 598 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF180-206 - 691 1.4e-11 44.3 66.5 10 12 0.28 1.9e+02 2.5 1.7 2 24 604 626 603 626 0.89 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF180-206 - 691 1.4e-11 44.3 66.5 11 12 0.1 69 3.9 0.1 2 23 632 653 631 654 0.79 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF180-206 - 691 1.4e-11 44.3 66.5 12 12 0.00065 0.45 10.9 0.2 2 23 660 681 659 682 0.91 Zinc-finger double-stranded RNA-binding zf_UBZ PF18439.1 32 ZNF180-206 - 691 1.6e-11 43.6 49.4 1 12 0.043 30 4.3 0.1 3 13 352 362 350 371 0.82 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF180-206 - 691 1.6e-11 43.6 49.4 2 12 0.0011 0.73 9.5 0.4 3 20 380 398 378 399 0.83 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF180-206 - 691 1.6e-11 43.6 49.4 3 12 0.017 12 5.6 0.1 3 14 408 419 406 423 0.87 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF180-206 - 691 1.6e-11 43.6 49.4 4 12 0.015 10 5.8 0.1 3 20 436 454 434 455 0.83 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF180-206 - 691 1.6e-11 43.6 49.4 5 12 0.011 7.6 6.2 0.1 3 21 464 483 462 483 0.84 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF180-206 - 691 1.6e-11 43.6 49.4 6 12 0.0036 2.5 7.8 0.1 3 21 492 511 490 511 0.86 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF180-206 - 691 1.6e-11 43.6 49.4 7 12 0.02 14 5.4 0.1 3 20 520 538 518 539 0.78 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF180-206 - 691 1.6e-11 43.6 49.4 8 12 0.006 4.2 7.1 0.1 3 14 548 559 546 564 0.84 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF180-206 - 691 1.6e-11 43.6 49.4 9 12 0.017 12 5.6 0.1 3 14 576 587 574 591 0.87 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF180-206 - 691 1.6e-11 43.6 49.4 10 12 0.0088 6.1 6.5 1.3 3 20 604 622 602 623 0.79 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF180-206 - 691 1.6e-11 43.6 49.4 11 12 0.016 11 5.7 0.0 3 17 632 646 630 650 0.87 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF180-206 - 691 1.6e-11 43.6 49.4 12 12 0.19 1.3e+02 2.3 0.1 3 14 660 671 658 679 0.77 Ubiquitin-Binding Zinc Finger zf_C2H2_13 PF18508.1 42 ZNF180-206 - 691 3.9e-10 39.2 32.2 1 13 0.53 3.6e+02 0.8 0.1 21 26 248 253 247 261 0.81 Zinc finger domain zf_C2H2_13 PF18508.1 42 ZNF180-206 - 691 3.9e-10 39.2 32.2 2 13 0.01 7.1 6.3 0.0 20 39 354 374 353 376 0.80 Zinc finger domain zf_C2H2_13 PF18508.1 42 ZNF180-206 - 691 3.9e-10 39.2 32.2 3 13 0.4 2.7e+02 1.2 0.0 20 39 382 402 381 405 0.74 Zinc finger domain zf_C2H2_13 PF18508.1 42 ZNF180-206 - 691 3.9e-10 39.2 32.2 4 13 0.012 8.3 6.1 0.1 17 36 408 427 404 431 0.72 Zinc finger domain zf_C2H2_13 PF18508.1 42 ZNF180-206 - 691 3.9e-10 39.2 32.2 5 13 0.045 31 4.3 0.0 20 36 438 455 437 459 0.69 Zinc finger domain zf_C2H2_13 PF18508.1 42 ZNF180-206 - 691 3.9e-10 39.2 32.2 6 13 0.016 11 5.7 0.1 20 38 466 485 465 487 0.81 Zinc finger domain zf_C2H2_13 PF18508.1 42 ZNF180-206 - 691 3.9e-10 39.2 32.2 7 13 0.016 11 5.7 0.0 20 39 494 514 493 516 0.79 Zinc finger domain zf_C2H2_13 PF18508.1 42 ZNF180-206 - 691 3.9e-10 39.2 32.2 8 13 0.0097 6.7 6.4 0.0 20 39 522 542 521 544 0.80 Zinc finger domain zf_C2H2_13 PF18508.1 42 ZNF180-206 - 691 3.9e-10 39.2 32.2 9 13 1.9 1.3e+03 -0.9 0.1 20 26 550 556 550 570 0.77 Zinc finger domain zf_C2H2_13 PF18508.1 42 ZNF180-206 - 691 3.9e-10 39.2 32.2 10 13 0.027 19 5.0 0.0 20 36 578 595 577 599 0.71 Zinc finger domain zf_C2H2_13 PF18508.1 42 ZNF180-206 - 691 3.9e-10 39.2 32.2 11 13 1 7.2e+02 -0.1 0.2 20 26 606 612 605 626 0.79 Zinc finger domain zf_C2H2_13 PF18508.1 42 ZNF180-206 - 691 3.9e-10 39.2 32.2 12 13 0.0056 3.9 7.2 0.0 20 35 634 650 633 655 0.79 Zinc finger domain zf_C2H2_13 PF18508.1 42 ZNF180-206 - 691 3.9e-10 39.2 32.2 13 13 0.95 6.5e+02 0.0 0.1 20 38 662 681 661 684 0.74 Zinc finger domain XPA_N PF01286.18 32 ZNF180-206 - 691 4e-09 36.4 67.0 1 12 0.12 84 3.3 0.3 3 14 353 364 351 367 0.87 XPA protein N-terminal XPA_N PF01286.18 32 ZNF180-206 - 691 4e-09 36.4 67.0 2 12 0.011 7.7 6.7 0.2 3 14 381 392 379 396 0.90 XPA protein N-terminal XPA_N PF01286.18 32 ZNF180-206 - 691 4e-09 36.4 67.0 3 12 0.002 1.4 9.0 0.0 3 15 409 421 407 425 0.90 XPA protein N-terminal XPA_N PF01286.18 32 ZNF180-206 - 691 4e-09 36.4 67.0 4 12 0.0044 3.1 7.9 0.3 3 15 437 449 435 451 0.94 XPA protein N-terminal XPA_N PF01286.18 32 ZNF180-206 - 691 4e-09 36.4 67.0 5 12 0.0043 2.9 8.0 0.3 3 15 465 477 463 479 0.94 XPA protein N-terminal XPA_N PF01286.18 32 ZNF180-206 - 691 4e-09 36.4 67.0 6 12 0.0036 2.5 8.2 0.6 3 15 493 505 491 507 0.94 XPA protein N-terminal XPA_N PF01286.18 32 ZNF180-206 - 691 4e-09 36.4 67.0 7 12 0.1 72 3.5 0.2 3 14 521 532 519 537 0.86 XPA protein N-terminal XPA_N PF01286.18 32 ZNF180-206 - 691 4e-09 36.4 67.0 8 12 0.014 9.6 6.4 0.3 3 14 549 560 547 563 0.89 XPA protein N-terminal XPA_N PF01286.18 32 ZNF180-206 - 691 4e-09 36.4 67.0 9 12 0.0015 1 9.4 0.1 3 15 577 589 575 593 0.90 XPA protein N-terminal XPA_N PF01286.18 32 ZNF180-206 - 691 4e-09 36.4 67.0 10 12 0.082 57 3.9 1.5 3 14 605 616 603 621 0.88 XPA protein N-terminal XPA_N PF01286.18 32 ZNF180-206 - 691 4e-09 36.4 67.0 11 12 0.058 40 4.4 0.3 3 14 633 644 631 645 0.89 XPA protein N-terminal XPA_N PF01286.18 32 ZNF180-206 - 691 4e-09 36.4 67.0 12 12 0.0023 1.6 8.8 0.1 3 15 661 673 659 675 0.94 XPA protein N-terminal zf-trcl PF13451.6 48 ZNF180-206 - 691 9.3e-08 31.8 40.8 1 12 0.003 2.1 8.3 0.1 2 18 349 365 348 367 0.89 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF180-206 - 691 9.3e-08 31.8 40.8 2 12 0.16 1.1e+02 2.8 0.1 3 14 378 389 376 394 0.89 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF180-206 - 691 9.3e-08 31.8 40.8 3 12 0.1 72 3.4 0.1 3 14 406 417 400 420 0.79 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF180-206 - 691 9.3e-08 31.8 40.8 4 12 0.15 1e+02 2.9 0.1 3 14 434 445 432 447 0.89 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF180-206 - 691 9.3e-08 31.8 40.8 5 12 0.031 21 5.1 0.1 3 15 462 474 460 478 0.89 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF180-206 - 691 9.3e-08 31.8 40.8 6 12 0.13 87 3.1 0.1 3 14 490 501 488 504 0.89 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF180-206 - 691 9.3e-08 31.8 40.8 7 12 0.0033 2.3 8.2 0.1 3 18 518 533 516 539 0.90 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF180-206 - 691 9.3e-08 31.8 40.8 8 12 0.17 1.2e+02 2.7 0.1 3 14 546 557 544 560 0.89 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF180-206 - 691 9.3e-08 31.8 40.8 9 12 0.13 87 3.1 0.1 3 14 574 585 572 588 0.89 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF180-206 - 691 9.3e-08 31.8 40.8 10 12 0.16 1.1e+02 2.8 0.1 3 14 602 613 600 616 0.89 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF180-206 - 691 9.3e-08 31.8 40.8 11 12 0.043 30 4.6 0.1 3 16 630 643 628 646 0.83 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF180-206 - 691 9.3e-08 31.8 40.8 12 12 0.022 15 5.6 0.1 3 15 658 670 656 674 0.89 Probable zinc-ribbon domain # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF180-206.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF180-206.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF180-206.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF180-206.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF180-206.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:00:51 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF180-207.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF180-207.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF180-207.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF180-207.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF180-207.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:00:52 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF180-208.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF180-208.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF180-208.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF180-208.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF180-208.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:00:52 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZNF180-209 - 349 2.3e-113 366.1 76.3 1 13 8.7e-05 0.036 14.5 0.2 12 25 7 20 1 20 0.88 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF180-209 - 349 2.3e-113 366.1 76.3 2 13 1.6e-12 6.6e-10 39.0 1.2 1 25 24 48 24 49 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF180-209 - 349 2.3e-113 366.1 76.3 3 13 3.1e-11 1.3e-08 34.9 1.4 1 25 52 76 52 77 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF180-209 - 349 2.3e-113 366.1 76.3 4 13 6.1e-11 2.5e-08 34.0 0.4 2 25 81 104 81 105 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF180-209 - 349 2.3e-113 366.1 76.3 5 13 6.4e-11 2.7e-08 33.9 0.3 2 24 109 131 108 133 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF180-209 - 349 2.3e-113 366.1 76.3 6 13 4.3e-11 1.8e-08 34.4 0.2 2 25 137 160 136 161 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF180-209 - 349 2.3e-113 366.1 76.3 7 13 3e-11 1.3e-08 34.9 0.5 2 25 165 188 164 188 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF180-209 - 349 2.3e-113 366.1 76.3 8 13 1.8e-12 7.7e-10 38.8 0.4 2 25 193 216 192 217 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF180-209 - 349 2.3e-113 366.1 76.3 9 13 1.2e-11 5e-09 36.2 0.6 1 25 220 244 220 245 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF180-209 - 349 2.3e-113 366.1 76.3 10 13 1.7e-11 7e-09 35.7 0.4 2 25 249 272 249 273 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF180-209 - 349 2.3e-113 366.1 76.3 11 13 3.4e-11 1.4e-08 34.8 0.8 2 25 277 300 277 300 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF180-209 - 349 2.3e-113 366.1 76.3 12 13 1.4e-10 5.7e-08 32.8 0.1 4 25 307 328 304 329 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF180-209 - 349 2.3e-113 366.1 76.3 13 13 0.00015 0.063 13.7 0.3 2 17 333 348 332 349 0.93 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZNF180-209 - 349 3.4e-80 260.3 89.8 1 12 5.2e-08 2.2e-05 24.7 1.4 1 23 10 32 10 32 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF180-209 - 349 3.4e-80 260.3 89.8 2 12 2.1e-10 8.8e-08 32.2 2.8 1 23 38 60 38 60 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF180-209 - 349 3.4e-80 260.3 89.8 3 12 5.2e-09 2.2e-06 27.8 1.2 1 23 66 88 66 88 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF180-209 - 349 3.4e-80 260.3 89.8 4 12 2.4e-09 1e-06 28.9 1.2 1 23 94 116 94 116 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF180-209 - 349 3.4e-80 260.3 89.8 5 12 1.2e-08 4.9e-06 26.7 0.3 1 23 122 144 122 144 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF180-209 - 349 3.4e-80 260.3 89.8 6 12 1.5e-09 6.2e-07 29.5 1.0 1 23 150 172 150 172 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF180-209 - 349 3.4e-80 260.3 89.8 7 12 5.9e-08 2.5e-05 24.5 0.4 1 23 178 200 178 200 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF180-209 - 349 3.4e-80 260.3 89.8 8 12 1.5e-09 6.4e-07 29.5 1.9 1 23 206 228 206 228 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF180-209 - 349 3.4e-80 260.3 89.8 9 12 6.7e-09 2.8e-06 27.5 0.6 1 23 234 256 234 256 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF180-209 - 349 3.4e-80 260.3 89.8 10 12 2.3e-08 9.5e-06 25.8 4.3 1 23 262 284 262 284 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF180-209 - 349 3.4e-80 260.3 89.8 11 12 4.9e-07 0.0002 21.6 0.4 1 23 290 312 290 312 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF180-209 - 349 3.4e-80 260.3 89.8 12 12 2.9e-06 0.0012 19.2 0.3 1 23 318 340 318 340 0.96 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZNF180-209 - 349 1.6e-49 162.2 88.9 1 12 3.4e-05 0.014 16.1 1.8 1 23 10 32 10 33 0.90 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF180-209 - 349 1.6e-49 162.2 88.9 2 12 2e-06 0.00084 20.0 2.6 1 23 38 60 38 61 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF180-209 - 349 1.6e-49 162.2 88.9 3 12 6.2e-06 0.0026 18.5 1.1 1 23 66 88 66 89 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF180-209 - 349 1.6e-49 162.2 88.9 4 12 1.3e-06 0.00053 20.6 0.9 1 23 94 116 94 117 0.97 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF180-209 - 349 1.6e-49 162.2 88.9 5 12 1.4e-05 0.006 17.3 0.3 1 23 122 144 122 145 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF180-209 - 349 1.6e-49 162.2 88.9 6 12 7.8e-07 0.00032 21.3 1.0 1 23 150 172 150 173 0.97 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF180-209 - 349 1.6e-49 162.2 88.9 7 12 1.7e-05 0.007 17.1 0.7 1 23 178 200 178 201 0.91 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF180-209 - 349 1.6e-49 162.2 88.9 8 12 3.7e-05 0.015 16.1 1.5 1 23 206 228 206 229 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF180-209 - 349 1.6e-49 162.2 88.9 9 12 5.3e-06 0.0022 18.7 0.8 1 23 234 256 234 257 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF180-209 - 349 1.6e-49 162.2 88.9 10 12 1e-05 0.0042 17.8 3.8 1 23 262 284 262 285 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF180-209 - 349 1.6e-49 162.2 88.9 11 12 5.8e-06 0.0024 18.6 0.5 1 23 290 312 290 313 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF180-209 - 349 1.6e-49 162.2 88.9 12 12 9.7e-06 0.004 17.9 0.3 1 23 318 340 318 341 0.97 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF180-209 - 349 1e-30 105.1 90.0 1 12 0.0004 0.17 12.0 1.1 2 13 10 21 10 35 0.75 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF180-209 - 349 1e-30 105.1 90.0 2 12 5.7e-05 0.024 14.7 3.2 2 24 38 60 38 63 0.91 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF180-209 - 349 1e-30 105.1 90.0 3 12 3.2e-05 0.013 15.4 1.1 2 24 66 88 66 91 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF180-209 - 349 1e-30 105.1 90.0 4 12 2e-06 0.00084 19.3 1.5 2 24 94 116 94 119 0.95 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF180-209 - 349 1e-30 105.1 90.0 5 12 0.0003 0.12 12.4 0.4 2 20 122 140 122 146 0.78 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF180-209 - 349 1e-30 105.1 90.0 6 12 2e-05 0.0085 16.1 2.0 2 24 150 172 150 175 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF180-209 - 349 1e-30 105.1 90.0 7 12 0.00024 0.099 12.7 0.6 2 24 178 200 178 203 0.76 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF180-209 - 349 1e-30 105.1 90.0 8 12 5.4e-05 0.023 14.7 1.0 2 14 206 218 206 229 0.79 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF180-209 - 349 1e-30 105.1 90.0 9 12 1.7e-05 0.0072 16.3 1.0 2 24 234 256 234 259 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF180-209 - 349 1e-30 105.1 90.0 10 12 0.00068 0.28 11.2 3.9 2 24 262 284 262 287 0.82 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF180-209 - 349 1e-30 105.1 90.0 11 12 0.00044 0.18 11.8 0.2 2 12 290 300 290 314 0.83 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF180-209 - 349 1e-30 105.1 90.0 12 12 0.12 48 4.1 0.3 2 24 318 340 318 343 0.82 C2H2-type zinc finger Zn-ribbon_8 PF09723.10 40 ZNF180-209 - 349 4.8e-19 68.2 55.1 1 10 4.3e-05 0.018 15.1 3.0 6 38 10 49 9 51 0.90 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF180-209 - 349 4.8e-19 68.2 55.1 2 10 0.0072 3 8.0 0.5 6 17 38 49 36 57 0.85 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF180-209 - 349 4.8e-19 68.2 55.1 3 10 2.3e-06 0.00096 19.2 2.5 6 37 66 104 65 107 0.90 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF180-209 - 349 4.8e-19 68.2 55.1 4 10 0.00019 0.081 13.1 4.7 6 34 94 129 93 135 0.91 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF180-209 - 349 4.8e-19 68.2 55.1 5 10 0.00021 0.086 13.0 4.9 6 35 122 158 121 163 0.91 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF180-209 - 349 4.8e-19 68.2 55.1 6 10 0.00057 0.24 11.6 5.0 6 34 150 185 148 187 0.89 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF180-209 - 349 4.8e-19 68.2 55.1 7 10 8.9e-05 0.037 14.1 3.8 6 38 178 217 177 219 0.89 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF180-209 - 349 4.8e-19 68.2 55.1 8 10 0.0042 1.7 8.8 0.5 6 17 206 217 205 233 0.80 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF180-209 - 349 4.8e-19 68.2 55.1 9 10 9.2e-06 0.0039 17.3 3.0 6 37 234 272 233 275 0.90 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF180-209 - 349 4.8e-19 68.2 55.1 10 10 9.8e-05 0.041 14.0 0.7 6 34 290 325 289 329 0.89 Zinc ribbon domain CpXC PF14353.6 118 ZNF180-209 - 349 1.1e-16 61.0 42.8 1 11 0.012 5.1 7.2 0.0 38 60 10 32 4 34 0.89 CpXC protein CpXC PF14353.6 118 ZNF180-209 - 349 1.1e-16 61.0 42.8 2 11 0.1 43 4.2 0.1 38 60 38 60 36 62 0.87 CpXC protein CpXC PF14353.6 118 ZNF180-209 - 349 1.1e-16 61.0 42.8 3 11 0.0054 2.2 8.3 0.1 38 60 66 88 64 90 0.91 CpXC protein CpXC PF14353.6 118 ZNF180-209 - 349 1.1e-16 61.0 42.8 4 11 0.0032 1.4 9.0 0.2 38 60 94 116 92 118 0.91 CpXC protein CpXC PF14353.6 118 ZNF180-209 - 349 1.1e-16 61.0 42.8 5 11 0.021 8.8 6.4 0.1 38 58 122 142 120 147 0.89 CpXC protein CpXC PF14353.6 118 ZNF180-209 - 349 1.1e-16 61.0 42.8 6 11 0.0037 1.6 8.8 0.2 38 60 150 172 147 174 0.91 CpXC protein CpXC PF14353.6 118 ZNF180-209 - 349 1.1e-16 61.0 42.8 7 11 0.0079 3.3 7.8 0.0 38 60 178 200 176 202 0.91 CpXC protein CpXC PF14353.6 118 ZNF180-209 - 349 1.1e-16 61.0 42.8 8 11 0.0045 1.9 8.6 1.0 27 60 224 256 207 258 0.76 CpXC protein CpXC PF14353.6 118 ZNF180-209 - 349 1.1e-16 61.0 42.8 9 11 0.28 1.2e+02 2.8 0.7 38 59 262 283 260 286 0.79 CpXC protein CpXC PF14353.6 118 ZNF180-209 - 349 1.1e-16 61.0 42.8 10 11 0.00049 0.2 11.7 0.1 38 60 290 312 288 314 0.92 CpXC protein CpXC PF14353.6 118 ZNF180-209 - 349 1.1e-16 61.0 42.8 11 11 0.023 9.5 6.3 0.1 38 60 318 340 316 346 0.90 CpXC protein zf-C2H2_jaz PF12171.8 27 ZNF180-209 - 349 1.6e-15 56.9 66.5 1 12 0.012 5.1 7.5 0.5 2 24 10 32 9 32 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF180-209 - 349 1.6e-15 56.9 66.5 2 12 0.00015 0.062 13.6 0.5 2 24 38 60 37 60 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF180-209 - 349 1.6e-15 56.9 66.5 3 12 0.0069 2.9 8.3 0.3 2 24 66 88 65 88 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF180-209 - 349 1.6e-15 56.9 66.5 4 12 0.048 20 5.6 0.7 2 24 94 116 93 116 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF180-209 - 349 1.6e-15 56.9 66.5 5 12 0.061 26 5.3 0.3 2 22 122 142 121 142 0.90 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF180-209 - 349 1.6e-15 56.9 66.5 6 12 0.0093 3.9 7.9 0.8 2 24 150 172 149 172 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF180-209 - 349 1.6e-15 56.9 66.5 7 12 0.0011 0.46 10.8 0.3 2 24 178 200 177 200 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF180-209 - 349 1.6e-15 56.9 66.5 8 12 0.0006 0.25 11.7 0.1 2 22 206 226 205 226 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF180-209 - 349 1.6e-15 56.9 66.5 9 12 0.0044 1.8 8.9 0.3 2 24 234 256 233 256 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF180-209 - 349 1.6e-15 56.9 66.5 10 12 0.2 85 3.6 1.7 2 24 262 284 261 284 0.90 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF180-209 - 349 1.6e-15 56.9 66.5 11 12 0.074 31 5.0 0.1 2 23 290 311 289 312 0.80 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF180-209 - 349 1.6e-15 56.9 66.5 12 12 0.00048 0.2 12.0 0.2 2 23 318 339 317 340 0.91 Zinc-finger double-stranded RNA-binding XPA_N PF01286.18 32 ZNF180-209 - 349 1.8e-15 56.7 57.6 1 12 0.094 39 4.4 0.3 3 14 11 22 9 25 0.87 XPA protein N-terminal XPA_N PF01286.18 32 ZNF180-209 - 349 1.8e-15 56.7 57.6 2 12 0.0085 3.5 7.7 0.2 3 14 39 50 37 54 0.90 XPA protein N-terminal XPA_N PF01286.18 32 ZNF180-209 - 349 1.8e-15 56.7 57.6 3 12 0.0015 0.64 10.1 0.0 3 15 67 79 65 83 0.90 XPA protein N-terminal XPA_N PF01286.18 32 ZNF180-209 - 349 1.8e-15 56.7 57.6 4 12 0.0034 1.4 9.0 0.3 3 15 95 107 93 109 0.94 XPA protein N-terminal XPA_N PF01286.18 32 ZNF180-209 - 349 1.8e-15 56.7 57.6 5 12 0.0032 1.4 9.1 0.3 3 15 123 135 121 137 0.94 XPA protein N-terminal XPA_N PF01286.18 32 ZNF180-209 - 349 1.8e-15 56.7 57.6 6 12 0.0027 1.1 9.3 0.6 3 15 151 163 149 165 0.94 XPA protein N-terminal XPA_N PF01286.18 32 ZNF180-209 - 349 1.8e-15 56.7 57.6 7 12 0.08 33 4.6 0.2 3 14 179 190 177 195 0.86 XPA protein N-terminal XPA_N PF01286.18 32 ZNF180-209 - 349 1.8e-15 56.7 57.6 8 12 0.011 4.4 7.4 0.3 3 14 207 218 205 221 0.89 XPA protein N-terminal XPA_N PF01286.18 32 ZNF180-209 - 349 1.8e-15 56.7 57.6 9 12 0.0011 0.47 10.5 0.1 3 15 235 247 233 251 0.90 XPA protein N-terminal XPA_N PF01286.18 32 ZNF180-209 - 349 1.8e-15 56.7 57.6 10 12 0.063 26 5.0 1.5 3 14 263 274 261 279 0.88 XPA protein N-terminal XPA_N PF01286.18 32 ZNF180-209 - 349 1.8e-15 56.7 57.6 11 12 0.045 19 5.4 0.3 3 14 291 302 289 303 0.89 XPA protein N-terminal XPA_N PF01286.18 32 ZNF180-209 - 349 1.8e-15 56.7 57.6 12 12 0.0018 0.74 9.9 0.1 3 15 319 331 317 333 0.94 XPA protein N-terminal zf_UBZ PF18439.1 32 ZNF180-209 - 349 3.6e-15 55.2 49.4 1 12 0.033 14 5.4 0.1 3 13 10 20 8 29 0.82 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF180-209 - 349 3.6e-15 55.2 49.4 2 12 0.00079 0.33 10.6 0.4 3 20 38 56 36 57 0.83 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF180-209 - 349 3.6e-15 55.2 49.4 3 12 0.013 5.5 6.7 0.1 3 14 66 77 64 81 0.87 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF180-209 - 349 3.6e-15 55.2 49.4 4 12 0.011 4.6 6.9 0.1 3 20 94 112 92 113 0.83 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF180-209 - 349 3.6e-15 55.2 49.4 5 12 0.0082 3.4 7.3 0.1 3 21 122 141 120 141 0.84 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF180-209 - 349 3.6e-15 55.2 49.4 6 12 0.0027 1.1 8.9 0.1 3 21 150 169 148 169 0.86 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF180-209 - 349 3.6e-15 55.2 49.4 7 12 0.015 6.3 6.5 0.1 3 20 178 196 176 197 0.79 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF180-209 - 349 3.6e-15 55.2 49.4 8 12 0.0046 1.9 8.1 0.1 3 14 206 217 204 222 0.84 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF180-209 - 349 3.6e-15 55.2 49.4 9 12 0.013 5.5 6.7 0.1 3 14 234 245 232 249 0.87 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF180-209 - 349 3.6e-15 55.2 49.4 10 12 0.0066 2.8 7.6 1.3 3 20 262 280 260 281 0.79 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF180-209 - 349 3.6e-15 55.2 49.4 11 12 0.012 5 6.8 0.0 3 17 290 304 288 308 0.87 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF180-209 - 349 3.6e-15 55.2 49.4 12 12 0.14 60 3.4 0.1 3 15 318 330 316 337 0.76 Ubiquitin-Binding Zinc Finger zf_C2H2_13 PF18508.1 42 ZNF180-209 - 349 6e-14 51.4 28.8 1 12 0.0077 3.2 7.4 0.0 20 39 12 32 11 34 0.80 Zinc finger domain zf_C2H2_13 PF18508.1 42 ZNF180-209 - 349 6e-14 51.4 28.8 2 12 0.3 1.2e+02 2.3 0.1 20 39 40 60 39 63 0.74 Zinc finger domain zf_C2H2_13 PF18508.1 42 ZNF180-209 - 349 6e-14 51.4 28.8 3 12 0.0085 3.6 7.3 0.1 17 36 66 85 61 89 0.73 Zinc finger domain zf_C2H2_13 PF18508.1 42 ZNF180-209 - 349 6e-14 51.4 28.8 4 12 0.034 14 5.4 0.0 20 36 96 113 95 117 0.70 Zinc finger domain zf_C2H2_13 PF18508.1 42 ZNF180-209 - 349 6e-14 51.4 28.8 5 12 0.012 4.8 6.8 0.1 20 39 124 144 123 146 0.82 Zinc finger domain zf_C2H2_13 PF18508.1 42 ZNF180-209 - 349 6e-14 51.4 28.8 6 12 0.012 5.1 6.8 0.0 20 39 152 172 151 174 0.79 Zinc finger domain zf_C2H2_13 PF18508.1 42 ZNF180-209 - 349 6e-14 51.4 28.8 7 12 0.0072 3 7.5 0.0 20 39 180 200 179 202 0.81 Zinc finger domain zf_C2H2_13 PF18508.1 42 ZNF180-209 - 349 6e-14 51.4 28.8 8 12 1.3 5.4e+02 0.3 0.1 20 26 208 214 207 228 0.77 Zinc finger domain zf_C2H2_13 PF18508.1 42 ZNF180-209 - 349 6e-14 51.4 28.8 9 12 0.02 8.5 6.1 0.0 20 36 236 253 235 257 0.72 Zinc finger domain zf_C2H2_13 PF18508.1 42 ZNF180-209 - 349 6e-14 51.4 28.8 10 12 0.79 3.3e+02 1.0 0.2 20 26 264 270 263 284 0.78 Zinc finger domain zf_C2H2_13 PF18508.1 42 ZNF180-209 - 349 6e-14 51.4 28.8 11 12 0.0042 1.7 8.3 0.0 20 35 292 308 291 313 0.79 Zinc finger domain zf_C2H2_13 PF18508.1 42 ZNF180-209 - 349 6e-14 51.4 28.8 12 12 0.71 2.9e+02 1.1 0.1 20 39 320 340 319 342 0.74 Zinc finger domain zf-trcl PF13451.6 48 ZNF180-209 - 349 1.8e-11 43.7 40.7 1 12 0.0023 0.94 9.4 0.1 2 18 7 23 6 25 0.89 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF180-209 - 349 1.8e-11 43.7 40.7 2 12 0.12 52 3.8 0.1 3 14 36 47 34 51 0.89 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF180-209 - 349 1.8e-11 43.7 40.7 3 12 0.082 34 4.4 0.1 3 14 64 75 61 78 0.77 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF180-209 - 349 1.8e-11 43.7 40.7 4 12 0.11 48 4.0 0.1 3 14 92 103 90 105 0.89 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF180-209 - 349 1.8e-11 43.7 40.7 5 12 0.024 9.9 6.2 0.1 3 15 120 132 118 136 0.89 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF180-209 - 349 1.8e-11 43.7 40.7 6 12 0.096 40 4.2 0.1 3 14 148 159 146 162 0.89 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF180-209 - 349 1.8e-11 43.7 40.7 7 12 0.0026 1.1 9.2 0.1 3 18 176 191 174 195 0.90 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF180-209 - 349 1.8e-11 43.7 40.7 8 12 0.13 54 3.8 0.1 3 14 204 215 202 218 0.89 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF180-209 - 349 1.8e-11 43.7 40.7 9 12 0.096 40 4.2 0.1 3 14 232 243 230 246 0.89 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF180-209 - 349 1.8e-11 43.7 40.7 10 12 0.12 52 3.9 0.1 3 14 260 271 258 274 0.89 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF180-209 - 349 1.8e-11 43.7 40.7 11 12 0.033 14 5.7 0.1 3 17 288 302 286 304 0.83 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF180-209 - 349 1.8e-11 43.7 40.7 12 12 0.017 7 6.6 0.1 3 15 316 328 314 332 0.89 Probable zinc-ribbon domain zf-C2HE PF16278.5 64 ZNF180-209 - 349 2.3e-11 44.0 71.1 1 10 0.0047 2 8.9 0.7 34 47 6 19 2 32 0.86 C2HE / C2H2 / C2HC zinc-binding finger zf-C2HE PF16278.5 64 ZNF180-209 - 349 2.3e-11 44.0 71.1 2 10 0.12 51 4.4 0.8 34 50 34 50 21 61 0.79 C2HE / C2H2 / C2HC zinc-binding finger zf-C2HE PF16278.5 64 ZNF180-209 - 349 2.3e-11 44.0 71.1 3 10 0.0058 2.4 8.7 0.8 28 49 57 77 48 80 0.75 C2HE / C2H2 / C2HC zinc-binding finger zf-C2HE PF16278.5 64 ZNF180-209 - 349 2.3e-11 44.0 71.1 4 10 0.0074 3.1 8.3 0.6 35 57 91 112 83 119 0.73 C2HE / C2H2 / C2HC zinc-binding finger zf-C2HE PF16278.5 64 ZNF180-209 - 349 2.3e-11 44.0 71.1 5 10 0.0096 4 8.0 0.8 35 50 119 134 108 144 0.84 C2HE / C2H2 / C2HC zinc-binding finger zf-C2HE PF16278.5 64 ZNF180-209 - 349 2.3e-11 44.0 71.1 6 10 0.012 5.1 7.6 0.8 35 49 147 161 136 173 0.82 C2HE / C2H2 / C2HC zinc-binding finger zf-C2HE PF16278.5 64 ZNF180-209 - 349 2.3e-11 44.0 71.1 7 10 0.0038 1.6 9.2 0.9 34 48 174 188 160 201 0.77 C2HE / C2H2 / C2HC zinc-binding finger zf-C2HE PF16278.5 64 ZNF180-209 - 349 2.3e-11 44.0 71.1 8 10 0.31 1.3e+02 3.1 5.4 35 49 231 245 190 249 0.81 C2HE / C2H2 / C2HC zinc-binding finger zf-C2HE PF16278.5 64 ZNF180-209 - 349 2.3e-11 44.0 71.1 9 10 0.19 79 3.8 7.3 28 47 281 299 248 312 0.78 C2HE / C2H2 / C2HC zinc-binding finger zf-C2HE PF16278.5 64 ZNF180-209 - 349 2.3e-11 44.0 71.1 10 10 0.0015 0.65 10.5 0.2 35 62 315 341 303 343 0.77 C2HE / C2H2 / C2HC zinc-binding finger C1_1 PF00130.22 53 ZNF180-209 - 349 1.2e-09 37.9 53.2 1 12 0.0035 1.5 8.8 1.8 10 37 8 46 2 50 0.84 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF180-209 - 349 1.2e-09 37.9 53.2 2 12 0.0022 0.94 9.4 2.0 7 36 33 73 24 75 0.81 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF180-209 - 349 1.2e-09 37.9 53.2 3 12 0.0019 0.8 9.6 3.3 7 37 61 102 52 106 0.83 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF180-209 - 349 1.2e-09 37.9 53.2 4 12 0.0055 2.3 8.2 3.2 7 36 90 129 84 131 0.80 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF180-209 - 349 1.2e-09 37.9 53.2 5 12 0.0096 4 7.4 3.2 8 36 118 157 111 159 0.78 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF180-209 - 349 1.2e-09 37.9 53.2 6 12 0.0068 2.8 7.9 3.2 5 36 144 185 140 187 0.80 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF180-209 - 349 1.2e-09 37.9 53.2 7 12 0.0012 0.49 10.3 1.5 9 37 175 214 168 218 0.82 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF180-209 - 349 1.2e-09 37.9 53.2 8 12 0.044 18 5.3 0.1 8 23 202 217 195 227 0.70 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF180-209 - 349 1.2e-09 37.9 53.2 9 12 0.00013 0.053 13.4 2.9 5 47 228 281 220 285 0.86 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF180-209 - 349 1.2e-09 37.9 53.2 10 12 0.012 5.1 7.1 4.2 7 37 258 298 252 299 0.80 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF180-209 - 349 1.2e-09 37.9 53.2 11 12 0.03 13 5.8 3.4 9 36 287 325 279 327 0.79 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF180-209 - 349 1.2e-09 37.9 53.2 12 12 0.16 65 3.5 0.4 8 22 314 331 306 348 0.71 Phorbol esters/diacylglycerol binding domain (C1 domain) zf-AN1 PF01428.16 40 ZNF180-209 - 349 1.8e-09 37.6 62.3 1 12 0.0051 2.1 8.6 0.1 9 23 5 19 3 24 0.86 AN1-like Zinc finger zf-AN1 PF01428.16 40 ZNF180-209 - 349 1.8e-09 37.6 62.3 2 12 0.045 19 5.5 0.7 12 23 36 47 27 60 0.85 AN1-like Zinc finger zf-AN1 PF01428.16 40 ZNF180-209 - 349 1.8e-09 37.6 62.3 3 12 0.034 14 5.9 0.8 12 23 64 75 54 77 0.84 AN1-like Zinc finger zf-AN1 PF01428.16 40 ZNF180-209 - 349 1.8e-09 37.6 62.3 4 12 0.025 10 6.3 0.2 12 23 92 103 84 104 0.84 AN1-like Zinc finger zf-AN1 PF01428.16 40 ZNF180-209 - 349 1.8e-09 37.6 62.3 5 12 0.026 11 6.3 0.3 12 23 120 131 112 131 0.83 AN1-like Zinc finger zf-AN1 PF01428.16 40 ZNF180-209 - 349 1.8e-09 37.6 62.3 6 12 0.023 9.5 6.5 0.1 12 23 148 159 140 162 0.86 AN1-like Zinc finger zf-AN1 PF01428.16 40 ZNF180-209 - 349 1.8e-09 37.6 62.3 7 12 0.01 4.2 7.6 0.2 12 23 176 187 167 187 0.83 AN1-like Zinc finger zf-AN1 PF01428.16 40 ZNF180-209 - 349 1.8e-09 37.6 62.3 8 12 0.039 16 5.7 0.1 12 23 204 215 196 220 0.86 AN1-like Zinc finger zf-AN1 PF01428.16 40 ZNF180-209 - 349 1.8e-09 37.6 62.3 9 12 0.024 10 6.4 0.2 12 23 232 243 224 245 0.86 AN1-like Zinc finger zf-AN1 PF01428.16 40 ZNF180-209 - 349 1.8e-09 37.6 62.3 10 12 0.065 27 5.0 1.6 12 23 260 271 252 285 0.85 AN1-like Zinc finger zf-AN1 PF01428.16 40 ZNF180-209 - 349 1.8e-09 37.6 62.3 11 12 0.008 3.3 7.9 1.3 11 23 287 299 272 306 0.78 AN1-like Zinc finger zf-AN1 PF01428.16 40 ZNF180-209 - 349 1.8e-09 37.6 62.3 12 12 0.12 51 4.2 0.1 12 23 316 327 308 328 0.83 AN1-like Zinc finger zf-LYAR PF08790.11 28 ZNF180-209 - 349 5.5e-09 35.8 52.5 1 12 0.07 29 4.7 0.3 1 12 10 21 10 29 0.78 LYAR-type C2HC zinc finger zf-LYAR PF08790.11 28 ZNF180-209 - 349 5.5e-09 35.8 52.5 2 12 0.048 20 5.2 0.2 1 14 38 51 38 58 0.76 LYAR-type C2HC zinc finger zf-LYAR PF08790.11 28 ZNF180-209 - 349 5.5e-09 35.8 52.5 3 12 0.058 24 4.9 0.2 2 12 67 77 66 81 0.80 LYAR-type C2HC zinc finger zf-LYAR PF08790.11 28 ZNF180-209 - 349 5.5e-09 35.8 52.5 4 12 0.036 15 5.6 0.1 1 16 94 108 94 113 0.80 LYAR-type C2HC zinc finger zf-LYAR PF08790.11 28 ZNF180-209 - 349 5.5e-09 35.8 52.5 5 12 0.13 55 3.8 0.1 1 15 122 135 122 141 0.78 LYAR-type C2HC zinc finger zf-LYAR PF08790.11 28 ZNF180-209 - 349 5.5e-09 35.8 52.5 6 12 0.023 9.5 6.2 0.2 1 16 150 164 150 169 0.78 LYAR-type C2HC zinc finger zf-LYAR PF08790.11 28 ZNF180-209 - 349 5.5e-09 35.8 52.5 7 12 0.065 27 4.8 0.1 1 18 178 196 178 198 0.75 LYAR-type C2HC zinc finger zf-LYAR PF08790.11 28 ZNF180-209 - 349 5.5e-09 35.8 52.5 8 12 0.085 36 4.4 0.1 1 14 206 219 206 224 0.84 LYAR-type C2HC zinc finger zf-LYAR PF08790.11 28 ZNF180-209 - 349 5.5e-09 35.8 52.5 9 12 0.056 23 5.0 0.2 1 12 234 245 234 249 0.80 LYAR-type C2HC zinc finger zf-LYAR PF08790.11 28 ZNF180-209 - 349 5.5e-09 35.8 52.5 10 12 0.066 27 4.8 1.1 1 14 262 275 262 282 0.78 LYAR-type C2HC zinc finger zf-LYAR PF08790.11 28 ZNF180-209 - 349 5.5e-09 35.8 52.5 11 12 0.037 15 5.6 0.1 1 12 290 301 290 308 0.87 LYAR-type C2HC zinc finger zf-LYAR PF08790.11 28 ZNF180-209 - 349 5.5e-09 35.8 52.5 12 12 0.0002 0.083 12.8 0.1 1 15 318 331 318 346 0.79 LYAR-type C2HC zinc finger DUF3268 PF11672.8 118 ZNF180-209 - 349 2.2e-08 34.4 35.6 1 6 0.00073 0.3 11.4 0.3 3 38 10 45 8 61 0.88 zinc-finger-containing domain DUF3268 PF11672.8 118 ZNF180-209 - 349 2.2e-08 34.4 35.6 2 6 0.0029 1.2 9.5 1.4 2 40 65 103 64 117 0.89 zinc-finger-containing domain DUF3268 PF11672.8 118 ZNF180-209 - 349 2.2e-08 34.4 35.6 3 6 0.019 8.1 6.8 1.2 2 38 121 157 120 171 0.78 zinc-finger-containing domain DUF3268 PF11672.8 118 ZNF180-209 - 349 2.2e-08 34.4 35.6 4 6 0.00057 0.24 11.8 0.3 3 38 178 213 176 226 0.89 zinc-finger-containing domain DUF3268 PF11672.8 118 ZNF180-209 - 349 2.2e-08 34.4 35.6 5 6 0.012 4.9 7.5 2.3 2 40 233 271 232 283 0.88 zinc-finger-containing domain DUF3268 PF11672.8 118 ZNF180-209 - 349 2.2e-08 34.4 35.6 6 6 0.0033 1.4 9.3 0.2 3 37 290 324 288 340 0.84 zinc-finger-containing domain zinc_ribbon_15 PF17032.5 86 ZNF180-209 - 349 4.4e-08 33.8 51.5 1 11 0.0033 1.4 9.7 6.5 32 78 32 78 1 81 0.80 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF180-209 - 349 4.4e-08 33.8 51.5 2 11 0.00085 0.36 11.6 2.2 33 80 61 108 53 112 0.86 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF180-209 - 349 4.4e-08 33.8 51.5 3 11 0.00036 0.15 12.8 2.2 33 79 89 135 78 139 0.85 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF180-209 - 349 4.4e-08 33.8 51.5 4 11 0.0015 0.61 10.9 2.3 32 80 116 164 107 168 0.85 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF180-209 - 349 4.4e-08 33.8 51.5 5 11 0.00071 0.3 11.9 1.5 30 76 142 188 137 196 0.86 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF180-209 - 349 4.4e-08 33.8 51.5 6 11 0.00056 0.23 12.2 1.4 33 78 173 218 165 224 0.87 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF180-209 - 349 4.4e-08 33.8 51.5 7 11 0.00066 0.28 12.0 1.7 33 79 201 247 193 249 0.86 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF180-209 - 349 4.4e-08 33.8 51.5 8 11 0.0036 1.5 9.6 3.2 31 77 227 273 218 277 0.86 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF180-209 - 349 4.4e-08 33.8 51.5 9 11 0.0018 0.73 10.6 2.5 33 76 257 300 247 305 0.84 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF180-209 - 349 4.4e-08 33.8 51.5 10 11 0.01 4.2 8.2 1.8 32 79 284 331 274 336 0.85 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF180-209 - 349 4.4e-08 33.8 51.5 11 11 1.1 4.6e+02 1.7 0.1 34 68 314 348 304 349 0.66 zinc-ribbon family Csm1 PF12539.8 84 ZNF180-209 - 349 1.1e-07 32.4 13.4 1 9 0.67 2.8e+02 2.2 0.0 19 49 2 32 1 48 0.78 Chromosome segregation protein Csm1/Pcs1 Csm1 PF12539.8 84 ZNF180-209 - 349 1.1e-07 32.4 13.4 2 9 0.25 1.1e+02 3.6 0.0 17 49 56 88 51 94 0.79 Chromosome segregation protein Csm1/Pcs1 Csm1 PF12539.8 84 ZNF180-209 - 349 1.1e-07 32.4 13.4 3 9 0.035 14 6.3 0.0 14 48 81 115 78 121 0.82 Chromosome segregation protein Csm1/Pcs1 Csm1 PF12539.8 84 ZNF180-209 - 349 1.1e-07 32.4 13.4 4 9 0.054 22 5.7 0.0 18 46 113 141 108 148 0.81 Chromosome segregation protein Csm1/Pcs1 Csm1 PF12539.8 84 ZNF180-209 - 349 1.1e-07 32.4 13.4 5 9 0.065 27 5.5 0.0 22 48 145 171 138 181 0.80 Chromosome segregation protein Csm1/Pcs1 Csm1 PF12539.8 84 ZNF180-209 - 349 1.1e-07 32.4 13.4 6 9 1.1 4.6e+02 1.5 0.0 18 49 169 200 164 222 0.76 Chromosome segregation protein Csm1/Pcs1 Csm1 PF12539.8 84 ZNF180-209 - 349 1.1e-07 32.4 13.4 7 9 0.16 68 4.2 0.1 21 51 228 258 218 268 0.78 Chromosome segregation protein Csm1/Pcs1 Csm1 PF12539.8 84 ZNF180-209 - 349 1.1e-07 32.4 13.4 8 9 0.13 53 4.5 0.0 19 48 282 311 274 316 0.80 Chromosome segregation protein Csm1/Pcs1 Csm1 PF12539.8 84 ZNF180-209 - 349 1.1e-07 32.4 13.4 9 9 0.014 5.9 7.6 0.0 17 52 308 343 304 348 0.77 Chromosome segregation protein Csm1/Pcs1 # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF180-209.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF180-209.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF180-209.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF180-209.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF180-209.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:00:53 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF180-210.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF180-210.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF180-210.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF180-210.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF180-210.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:00:53 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZNF180-211 - 665 3.1e-106 343.5 87.5 1 13 0.00012 0.077 13.5 0.2 12 25 323 336 317 336 0.88 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF180-211 - 665 3.1e-106 343.5 87.5 2 13 2.2e-12 1.4e-09 37.9 1.2 1 25 340 364 340 365 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF180-211 - 665 3.1e-106 343.5 87.5 3 13 4.3e-11 2.8e-08 33.8 1.4 1 25 368 392 368 393 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF180-211 - 665 3.1e-106 343.5 87.5 4 13 8.3e-11 5.5e-08 32.9 0.4 2 25 397 420 397 421 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF180-211 - 665 3.1e-106 343.5 87.5 5 13 8.8e-11 5.8e-08 32.8 0.3 2 24 425 447 424 449 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF180-211 - 665 3.1e-106 343.5 87.5 6 13 6e-11 4e-08 33.3 0.2 2 25 453 476 452 477 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF180-211 - 665 3.1e-106 343.5 87.5 7 13 4.2e-11 2.8e-08 33.8 0.5 2 25 481 504 480 504 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF180-211 - 665 3.1e-106 343.5 87.5 8 13 2.5e-12 1.7e-09 37.7 0.4 2 25 509 532 508 533 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF180-211 - 665 3.1e-106 343.5 87.5 9 13 1.7e-11 1.1e-08 35.1 0.6 1 25 536 560 536 561 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF180-211 - 665 3.1e-106 343.5 87.5 10 13 2.3e-11 1.5e-08 34.7 0.4 2 25 565 588 565 589 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF180-211 - 665 3.1e-106 343.5 87.5 11 13 4.6e-11 3.1e-08 33.7 0.8 2 25 593 616 593 616 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF180-211 - 665 3.1e-106 343.5 87.5 12 13 1.9e-10 1.2e-07 31.8 0.1 4 25 623 644 620 645 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF180-211 - 665 3.1e-106 343.5 87.5 13 13 0.0002 0.13 12.7 0.3 2 17 649 664 648 665 0.93 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZNF180-211 - 665 1.2e-76 249.0 89.8 1 12 7.2e-08 4.8e-05 23.6 1.4 1 23 326 348 326 348 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF180-211 - 665 1.2e-76 249.0 89.8 2 12 2.9e-10 1.9e-07 31.1 2.8 1 23 354 376 354 376 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF180-211 - 665 1.2e-76 249.0 89.8 3 12 7.2e-09 4.8e-06 26.7 1.2 1 23 382 404 382 404 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF180-211 - 665 1.2e-76 249.0 89.8 4 12 3.3e-09 2.2e-06 27.8 1.2 1 23 410 432 410 432 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF180-211 - 665 1.2e-76 249.0 89.8 5 12 1.6e-08 1.1e-05 25.6 0.3 1 23 438 460 438 460 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF180-211 - 665 1.2e-76 249.0 89.8 6 12 2e-09 1.4e-06 28.5 1.0 1 23 466 488 466 488 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF180-211 - 665 1.2e-76 249.0 89.8 7 12 8.1e-08 5.4e-05 23.4 0.4 1 23 494 516 494 516 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF180-211 - 665 1.2e-76 249.0 89.8 8 12 2.1e-09 1.4e-06 28.4 1.9 1 23 522 544 522 544 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF180-211 - 665 1.2e-76 249.0 89.8 9 12 9.2e-09 6.1e-06 26.4 0.6 1 23 550 572 550 572 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF180-211 - 665 1.2e-76 249.0 89.8 10 12 3.1e-08 2.1e-05 24.7 4.3 1 23 578 600 578 600 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF180-211 - 665 1.2e-76 249.0 89.8 11 12 6.6e-07 0.00044 20.5 0.4 1 23 606 628 606 628 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF180-211 - 665 1.2e-76 249.0 89.8 12 12 3.9e-06 0.0026 18.1 0.3 1 23 634 656 634 656 0.96 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZNF180-211 - 665 1.7e-42 140.4 100.0 1 12 4.7e-05 0.031 15.1 1.8 1 23 326 348 326 349 0.90 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF180-211 - 665 1.7e-42 140.4 100.0 2 12 2.8e-06 0.0019 18.9 2.6 1 23 354 376 354 377 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF180-211 - 665 1.7e-42 140.4 100.0 3 12 8.5e-06 0.0057 17.4 1.1 1 23 382 404 382 405 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF180-211 - 665 1.7e-42 140.4 100.0 4 12 1.8e-06 0.0012 19.5 0.9 1 23 410 432 410 433 0.97 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF180-211 - 665 1.7e-42 140.4 100.0 5 12 2e-05 0.013 16.3 0.3 1 23 438 460 438 461 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF180-211 - 665 1.7e-42 140.4 100.0 6 12 1.1e-06 0.00071 20.2 1.0 1 23 466 488 466 489 0.97 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF180-211 - 665 1.7e-42 140.4 100.0 7 12 2.3e-05 0.015 16.0 0.7 1 23 494 516 494 517 0.91 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF180-211 - 665 1.7e-42 140.4 100.0 8 12 5.1e-05 0.034 15.0 1.5 1 23 522 544 522 545 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF180-211 - 665 1.7e-42 140.4 100.0 9 12 7.4e-06 0.0049 17.6 0.8 1 23 550 572 550 573 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF180-211 - 665 1.7e-42 140.4 100.0 10 12 1.4e-05 0.0093 16.7 3.8 1 23 578 600 578 601 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF180-211 - 665 1.7e-42 140.4 100.0 11 12 8e-06 0.0053 17.5 0.5 1 23 606 628 606 629 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF180-211 - 665 1.7e-42 140.4 100.0 12 12 1.3e-05 0.0089 16.8 0.3 1 23 634 656 634 657 0.97 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF180-211 - 665 5.3e-27 93.3 89.8 1 12 0.00056 0.37 10.8 1.0 2 12 326 336 326 350 0.77 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF180-211 - 665 5.3e-27 93.3 89.8 2 12 7.7e-05 0.051 13.6 3.2 2 24 354 376 354 379 0.91 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF180-211 - 665 5.3e-27 93.3 89.8 3 12 4.4e-05 0.029 14.4 1.1 2 24 382 404 382 407 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF180-211 - 665 5.3e-27 93.3 89.8 4 12 2.8e-06 0.0018 18.2 1.5 2 24 410 432 410 435 0.95 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF180-211 - 665 5.3e-27 93.3 89.8 5 12 0.00039 0.26 11.3 0.4 2 20 438 456 438 462 0.78 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF180-211 - 665 5.3e-27 93.3 89.8 6 12 2.8e-05 0.018 15.0 2.0 2 24 466 488 466 491 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF180-211 - 665 5.3e-27 93.3 89.8 7 12 0.00032 0.21 11.6 0.6 2 24 494 516 494 519 0.76 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF180-211 - 665 5.3e-27 93.3 89.8 8 12 7.2e-05 0.047 13.7 0.9 2 13 522 533 522 545 0.79 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF180-211 - 665 5.3e-27 93.3 89.8 9 12 2.4e-05 0.016 15.2 1.0 2 24 550 572 550 575 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF180-211 - 665 5.3e-27 93.3 89.8 10 12 0.00089 0.59 10.2 3.9 2 24 578 600 578 603 0.81 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF180-211 - 665 5.3e-27 93.3 89.8 11 12 0.00058 0.38 10.8 0.2 2 12 606 616 606 630 0.84 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF180-211 - 665 5.3e-27 93.3 89.8 12 12 0.16 1e+02 3.0 0.3 2 24 634 656 634 659 0.82 C2H2-type zinc finger Zn-ribbon_8 PF09723.10 40 ZNF180-211 - 665 9.9e-17 60.8 57.2 1 11 0.013 8.9 6.5 1.5 6 34 302 333 301 336 0.70 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF180-211 - 665 9.9e-17 60.8 57.2 2 11 9.2e-05 0.061 13.4 3.5 6 38 326 365 325 366 0.89 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF180-211 - 665 9.9e-17 60.8 57.2 3 11 0.0092 6.1 7.1 0.6 6 17 354 365 352 374 0.84 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF180-211 - 665 9.9e-17 60.8 57.2 4 11 3.1e-06 0.002 18.2 2.4 6 37 382 420 381 423 0.90 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF180-211 - 665 9.9e-17 60.8 57.2 5 11 0.00018 0.12 12.5 4.1 6 34 410 445 409 450 0.91 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF180-211 - 665 9.9e-17 60.8 57.2 6 11 0.00017 0.12 12.6 4.1 6 35 438 474 437 479 0.91 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF180-211 - 665 9.9e-17 60.8 57.2 7 11 0.00057 0.38 10.9 4.7 6 34 466 501 465 504 0.89 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF180-211 - 665 9.9e-17 60.8 57.2 8 11 0.0001 0.07 13.3 3.5 6 38 494 533 493 535 0.89 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF180-211 - 665 9.9e-17 60.8 57.2 9 11 7.7e-05 0.051 13.7 4.4 6 35 522 558 520 562 0.87 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF180-211 - 665 9.9e-17 60.8 57.2 10 11 1.2e-05 0.0077 16.3 2.7 6 37 550 588 549 590 0.90 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF180-211 - 665 9.9e-17 60.8 57.2 11 11 0.00015 0.1 12.7 0.8 6 34 606 641 605 644 0.89 Zinc ribbon domain KRAB PF01352.27 42 ZNF180-211 - 665 1.1e-15 56.9 0.0 1 1 3.5e-18 2.4e-15 55.9 0.0 2 42 45 85 44 85 0.97 KRAB box CpXC PF14353.6 118 ZNF180-211 - 665 2.9e-13 49.9 44.2 1 11 0.0041 2.7 8.0 0.1 20 60 307 348 296 350 0.77 CpXC protein CpXC PF14353.6 118 ZNF180-211 - 665 2.9e-13 49.9 44.2 2 11 0.14 92 3.1 0.1 38 60 354 376 352 378 0.87 CpXC protein CpXC PF14353.6 118 ZNF180-211 - 665 2.9e-13 49.9 44.2 3 11 0.0072 4.8 7.3 0.1 38 60 382 404 380 406 0.91 CpXC protein CpXC PF14353.6 118 ZNF180-211 - 665 2.9e-13 49.9 44.2 4 11 0.0044 2.9 8.0 0.2 38 60 410 432 408 434 0.91 CpXC protein CpXC PF14353.6 118 ZNF180-211 - 665 2.9e-13 49.9 44.2 5 11 0.029 19 5.3 0.1 38 58 438 458 436 462 0.89 CpXC protein CpXC PF14353.6 118 ZNF180-211 - 665 2.9e-13 49.9 44.2 6 11 0.0047 3.1 7.9 0.2 38 60 466 488 459 490 0.91 CpXC protein CpXC PF14353.6 118 ZNF180-211 - 665 2.9e-13 49.9 44.2 7 11 0.011 7.1 6.7 0.0 38 60 494 516 492 518 0.91 CpXC protein CpXC PF14353.6 118 ZNF180-211 - 665 2.9e-13 49.9 44.2 8 11 0.0063 4.2 7.5 0.9 27 60 540 572 523 574 0.76 CpXC protein CpXC PF14353.6 118 ZNF180-211 - 665 2.9e-13 49.9 44.2 9 11 0.38 2.5e+02 1.7 0.7 38 59 578 599 576 602 0.79 CpXC protein CpXC PF14353.6 118 ZNF180-211 - 665 2.9e-13 49.9 44.2 10 11 0.00066 0.44 10.6 0.1 38 60 606 628 604 630 0.92 CpXC protein CpXC PF14353.6 118 ZNF180-211 - 665 2.9e-13 49.9 44.2 11 11 0.031 21 5.2 0.1 38 60 634 656 632 662 0.90 CpXC protein zf-C2H2_jaz PF12171.8 27 ZNF180-211 - 665 8.5e-12 45.0 66.5 1 12 0.017 11 6.4 0.5 2 24 326 348 325 348 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF180-211 - 665 8.5e-12 45.0 66.5 2 12 0.0002 0.13 12.5 0.5 2 24 354 376 353 376 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF180-211 - 665 8.5e-12 45.0 66.5 3 12 0.0094 6.2 7.2 0.3 2 24 382 404 381 404 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF180-211 - 665 8.5e-12 45.0 66.5 4 12 0.065 43 4.6 0.7 2 24 410 432 409 432 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF180-211 - 665 8.5e-12 45.0 66.5 5 12 0.082 55 4.2 0.3 2 22 438 458 437 458 0.90 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF180-211 - 665 8.5e-12 45.0 66.5 6 12 0.013 8.4 6.8 0.8 2 24 466 488 465 488 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF180-211 - 665 8.5e-12 45.0 66.5 7 12 0.0015 0.99 9.8 0.3 2 24 494 516 493 516 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF180-211 - 665 8.5e-12 45.0 66.5 8 12 0.0008 0.53 10.6 0.1 2 22 522 542 521 542 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF180-211 - 665 8.5e-12 45.0 66.5 9 12 0.0059 3.9 7.9 0.3 2 24 550 572 549 572 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF180-211 - 665 8.5e-12 45.0 66.5 10 12 0.27 1.8e+02 2.6 1.7 2 24 578 600 577 600 0.89 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF180-211 - 665 8.5e-12 45.0 66.5 11 12 0.1 66 4.0 0.1 2 23 606 627 605 628 0.79 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF180-211 - 665 8.5e-12 45.0 66.5 12 12 0.00064 0.43 10.9 0.2 2 23 634 655 633 656 0.91 Zinc-finger double-stranded RNA-binding zf_UBZ PF18439.1 32 ZNF180-211 - 665 9.9e-12 44.3 49.4 1 12 0.043 29 4.4 0.1 3 13 326 336 324 345 0.82 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF180-211 - 665 9.9e-12 44.3 49.4 2 12 0.0011 0.7 9.5 0.4 3 20 354 372 352 373 0.83 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF180-211 - 665 9.9e-12 44.3 49.4 3 12 0.017 11 5.7 0.1 3 14 382 393 380 397 0.87 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF180-211 - 665 9.9e-12 44.3 49.4 4 12 0.015 9.8 5.9 0.1 3 20 410 428 408 429 0.83 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF180-211 - 665 9.9e-12 44.3 49.4 5 12 0.011 7.3 6.3 0.1 3 21 438 457 436 457 0.84 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF180-211 - 665 9.9e-12 44.3 49.4 6 12 0.0036 2.4 7.8 0.1 3 21 466 485 464 485 0.86 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF180-211 - 665 9.9e-12 44.3 49.4 7 12 0.02 13 5.4 0.1 3 20 494 512 492 513 0.78 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF180-211 - 665 9.9e-12 44.3 49.4 8 12 0.006 4 7.1 0.1 3 14 522 533 520 538 0.84 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF180-211 - 665 9.9e-12 44.3 49.4 9 12 0.017 11 5.7 0.1 3 14 550 561 548 565 0.87 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF180-211 - 665 9.9e-12 44.3 49.4 10 12 0.0087 5.8 6.6 1.3 3 20 578 596 576 597 0.79 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF180-211 - 665 9.9e-12 44.3 49.4 11 12 0.016 10 5.8 0.0 3 17 606 620 604 624 0.87 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF180-211 - 665 9.9e-12 44.3 49.4 12 12 0.19 1.3e+02 2.3 0.1 3 14 634 645 632 653 0.77 Ubiquitin-Binding Zinc Finger zf_C2H2_13 PF18508.1 42 ZNF180-211 - 665 2e-10 40.1 32.0 1 13 0.53 3.5e+02 0.9 0.1 21 26 222 227 221 235 0.81 Zinc finger domain zf_C2H2_13 PF18508.1 42 ZNF180-211 - 665 2e-10 40.1 32.0 2 13 0.0099 6.6 6.4 0.0 20 39 328 348 326 350 0.81 Zinc finger domain zf_C2H2_13 PF18508.1 42 ZNF180-211 - 665 2e-10 40.1 32.0 3 13 0.4 2.6e+02 1.3 0.1 20 39 356 376 355 379 0.74 Zinc finger domain zf_C2H2_13 PF18508.1 42 ZNF180-211 - 665 2e-10 40.1 32.0 4 13 0.012 7.8 6.2 0.2 17 36 382 401 377 405 0.73 Zinc finger domain zf_C2H2_13 PF18508.1 42 ZNF180-211 - 665 2e-10 40.1 32.0 5 13 0.045 30 4.3 0.0 20 36 412 429 411 433 0.69 Zinc finger domain zf_C2H2_13 PF18508.1 42 ZNF180-211 - 665 2e-10 40.1 32.0 6 13 0.016 11 5.7 0.1 20 38 440 459 439 461 0.81 Zinc finger domain zf_C2H2_13 PF18508.1 42 ZNF180-211 - 665 2e-10 40.1 32.0 7 13 0.016 11 5.7 0.0 20 39 468 488 467 490 0.79 Zinc finger domain zf_C2H2_13 PF18508.1 42 ZNF180-211 - 665 2e-10 40.1 32.0 8 13 0.0096 6.4 6.5 0.0 20 39 496 516 495 518 0.80 Zinc finger domain zf_C2H2_13 PF18508.1 42 ZNF180-211 - 665 2e-10 40.1 32.0 9 13 1.9 1.2e+03 -0.9 0.1 20 26 524 530 524 544 0.77 Zinc finger domain zf_C2H2_13 PF18508.1 42 ZNF180-211 - 665 2e-10 40.1 32.0 10 13 0.027 18 5.0 0.0 20 36 552 569 551 573 0.71 Zinc finger domain zf_C2H2_13 PF18508.1 42 ZNF180-211 - 665 2e-10 40.1 32.0 11 13 1 6.9e+02 -0.0 0.2 20 26 580 586 579 600 0.79 Zinc finger domain zf_C2H2_13 PF18508.1 42 ZNF180-211 - 665 2e-10 40.1 32.0 12 13 0.0056 3.7 7.2 0.0 20 35 608 624 607 629 0.79 Zinc finger domain zf_C2H2_13 PF18508.1 42 ZNF180-211 - 665 2e-10 40.1 32.0 13 13 0.94 6.3e+02 0.1 0.1 20 38 636 655 635 658 0.74 Zinc finger domain XPA_N PF01286.18 32 ZNF180-211 - 665 2.4e-09 37.1 67.0 1 12 0.12 81 3.4 0.3 3 14 327 338 325 341 0.87 XPA protein N-terminal XPA_N PF01286.18 32 ZNF180-211 - 665 2.4e-09 37.1 67.0 2 12 0.011 7.3 6.7 0.2 3 14 355 366 353 370 0.90 XPA protein N-terminal XPA_N PF01286.18 32 ZNF180-211 - 665 2.4e-09 37.1 67.0 3 12 0.002 1.3 9.1 0.0 3 15 383 395 381 399 0.90 XPA protein N-terminal XPA_N PF01286.18 32 ZNF180-211 - 665 2.4e-09 37.1 67.0 4 12 0.0044 2.9 8.0 0.3 3 15 411 423 409 425 0.94 XPA protein N-terminal XPA_N PF01286.18 32 ZNF180-211 - 665 2.4e-09 37.1 67.0 5 12 0.0042 2.8 8.1 0.3 3 15 439 451 437 453 0.94 XPA protein N-terminal XPA_N PF01286.18 32 ZNF180-211 - 665 2.4e-09 37.1 67.0 6 12 0.0036 2.4 8.3 0.6 3 15 467 479 465 481 0.94 XPA protein N-terminal XPA_N PF01286.18 32 ZNF180-211 - 665 2.4e-09 37.1 67.0 7 12 0.1 69 3.6 0.2 3 14 495 506 493 511 0.86 XPA protein N-terminal XPA_N PF01286.18 32 ZNF180-211 - 665 2.4e-09 37.1 67.0 8 12 0.014 9.2 6.4 0.3 3 14 523 534 521 537 0.89 XPA protein N-terminal XPA_N PF01286.18 32 ZNF180-211 - 665 2.4e-09 37.1 67.0 9 12 0.0015 0.99 9.5 0.1 3 15 551 563 549 567 0.90 XPA protein N-terminal XPA_N PF01286.18 32 ZNF180-211 - 665 2.4e-09 37.1 67.0 10 12 0.082 55 3.9 1.5 3 14 579 590 577 595 0.88 XPA protein N-terminal XPA_N PF01286.18 32 ZNF180-211 - 665 2.4e-09 37.1 67.0 11 12 0.058 39 4.4 0.3 3 14 607 618 605 619 0.89 XPA protein N-terminal XPA_N PF01286.18 32 ZNF180-211 - 665 2.4e-09 37.1 67.0 12 12 0.0023 1.5 8.9 0.1 3 15 635 647 633 649 0.94 XPA protein N-terminal zf-trcl PF13451.6 48 ZNF180-211 - 665 5.2e-08 32.7 40.6 1 12 0.003 2 8.4 0.1 2 18 323 339 322 341 0.89 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF180-211 - 665 5.2e-08 32.7 40.6 2 12 0.16 1.1e+02 2.8 0.1 3 14 352 363 350 367 0.89 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF180-211 - 665 5.2e-08 32.7 40.6 3 12 0.1 69 3.4 0.1 3 14 380 391 375 394 0.78 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF180-211 - 665 5.2e-08 32.7 40.6 4 12 0.15 98 3.0 0.1 3 14 408 419 406 421 0.89 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF180-211 - 665 5.2e-08 32.7 40.6 5 12 0.031 21 5.1 0.1 3 15 436 448 434 452 0.89 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF180-211 - 665 5.2e-08 32.7 40.6 6 12 0.13 83 3.2 0.1 3 14 464 475 462 478 0.89 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF180-211 - 665 5.2e-08 32.7 40.6 7 12 0.0033 2.2 8.2 0.1 3 18 492 507 490 512 0.90 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF180-211 - 665 5.2e-08 32.7 40.6 8 12 0.17 1.1e+02 2.8 0.1 3 14 520 531 518 534 0.89 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF180-211 - 665 5.2e-08 32.7 40.6 9 12 0.13 83 3.2 0.1 3 14 548 559 546 562 0.89 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF180-211 - 665 5.2e-08 32.7 40.6 10 12 0.16 1.1e+02 2.8 0.1 3 14 576 587 574 590 0.89 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF180-211 - 665 5.2e-08 32.7 40.6 11 12 0.043 29 4.7 0.1 3 16 604 617 602 620 0.83 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF180-211 - 665 5.2e-08 32.7 40.6 12 12 0.022 15 5.6 0.1 3 15 632 644 630 648 0.89 Probable zinc-ribbon domain zf-C2HE PF16278.5 64 ZNF180-211 - 665 5.8e-07 29.9 77.7 1 9 0.0014 0.93 10.0 2.4 7 47 296 335 290 349 0.75 C2HE / C2H2 / C2HC zinc-binding finger zf-C2HE PF16278.5 64 ZNF180-211 - 665 5.8e-07 29.9 77.7 2 9 0.1 68 4.0 5.1 23 49 368 393 338 398 0.77 C2HE / C2H2 / C2HC zinc-binding finger zf-C2HE PF16278.5 64 ZNF180-211 - 665 5.8e-07 29.9 77.7 3 9 0.0086 5.7 7.5 0.5 35 57 407 428 394 435 0.74 C2HE / C2H2 / C2HC zinc-binding finger zf-C2HE PF16278.5 64 ZNF180-211 - 665 5.8e-07 29.9 77.7 4 9 0.0099 6.6 7.3 0.5 35 50 435 450 422 460 0.83 C2HE / C2H2 / C2HC zinc-binding finger zf-C2HE PF16278.5 64 ZNF180-211 - 665 5.8e-07 29.9 77.7 5 9 0.017 11 6.6 0.7 35 49 463 477 455 489 0.81 C2HE / C2H2 / C2HC zinc-binding finger zf-C2HE PF16278.5 64 ZNF180-211 - 665 5.8e-07 29.9 77.7 6 9 0.0059 3.9 8.0 1.0 34 48 490 504 477 517 0.78 C2HE / C2H2 / C2HC zinc-binding finger zf-C2HE PF16278.5 64 ZNF180-211 - 665 5.8e-07 29.9 77.7 7 9 0.4 2.7e+02 2.1 5.3 35 49 547 561 505 565 0.81 C2HE / C2H2 / C2HC zinc-binding finger zf-C2HE PF16278.5 64 ZNF180-211 - 665 5.8e-07 29.9 77.7 8 9 0.26 1.7e+02 2.7 7.2 28 47 597 615 562 628 0.79 C2HE / C2H2 / C2HC zinc-binding finger zf-C2HE PF16278.5 64 ZNF180-211 - 665 5.8e-07 29.9 77.7 9 9 0.0024 1.6 9.3 0.2 35 62 631 657 622 659 0.76 C2HE / C2H2 / C2HC zinc-binding finger # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF180-211.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF180-211.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF180-211.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF180-211.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF180-211.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:00:54 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZNF181-201 - 615 2e-86 280.9 83.9 1 12 5e-05 0.064 13.7 0.3 12 25 278 291 276 292 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF181-201 - 615 2e-86 280.9 83.9 2 12 1.2e-11 1.5e-08 34.6 0.9 2 26 296 320 295 320 0.97 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF181-201 - 615 2e-86 280.9 83.9 3 12 1.1e-11 1.4e-08 34.7 0.7 1 26 323 348 323 348 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF181-201 - 615 2e-86 280.9 83.9 4 12 1.7e-11 2.1e-08 34.2 0.6 1 25 351 375 351 376 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF181-201 - 615 2e-86 280.9 83.9 5 12 2.9e-09 3.8e-06 27.1 0.7 1 26 379 404 379 404 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF181-201 - 615 2e-86 280.9 83.9 6 12 5.5e-10 7.1e-07 29.4 1.3 3 24 409 430 407 430 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF181-201 - 615 2e-86 280.9 83.9 7 12 2.7e-10 3.4e-07 30.4 2.1 1 26 435 460 435 460 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF181-201 - 615 2e-86 280.9 83.9 8 12 1.1e-09 1.3e-06 28.5 0.8 2 25 464 487 464 488 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF181-201 - 615 2e-86 280.9 83.9 9 12 3.7e-09 4.8e-06 26.8 0.5 1 26 491 516 491 516 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF181-201 - 615 2e-86 280.9 83.9 10 12 2.2e-10 2.9e-07 30.6 3.0 2 25 520 543 519 544 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF181-201 - 615 2e-86 280.9 83.9 11 12 8.2e-12 1e-08 35.2 0.6 1 25 547 571 547 572 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF181-201 - 615 2e-86 280.9 83.9 12 12 0.00053 0.68 10.5 0.3 1 14 575 588 575 610 0.82 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZNF181-201 - 615 2.5e-51 169.4 95.3 1 12 1.1e-06 0.0014 19.0 0.2 1 23 281 303 281 303 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF181-201 - 615 2.5e-51 169.4 95.3 2 12 1.3e-07 0.00017 21.8 1.7 1 23 309 331 309 331 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF181-201 - 615 2.5e-51 169.4 95.3 3 12 1.2e-06 0.0016 18.8 1.5 1 23 337 359 337 359 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF181-201 - 615 2.5e-51 169.4 95.3 4 12 1.5e-08 1.9e-05 24.8 1.1 1 23 365 387 365 387 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF181-201 - 615 2.5e-51 169.4 95.3 5 12 8.6e-08 0.00011 22.5 2.3 1 23 393 415 393 415 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF181-201 - 615 2.5e-51 169.4 95.3 6 12 6.5e-06 0.0083 16.5 7.0 1 23 421 443 421 443 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF181-201 - 615 2.5e-51 169.4 95.3 7 12 2.5e-06 0.0032 17.8 0.7 1 23 449 471 449 471 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF181-201 - 615 2.5e-51 169.4 95.3 8 12 8.5e-07 0.0011 19.3 1.7 1 23 477 499 477 499 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF181-201 - 615 2.5e-51 169.4 95.3 9 12 7.4e-08 9.5e-05 22.7 3.1 1 23 505 527 505 527 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF181-201 - 615 2.5e-51 169.4 95.3 10 12 6e-06 0.0077 16.6 2.1 1 23 533 555 533 555 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF181-201 - 615 2.5e-51 169.4 95.3 11 12 4.4e-09 5.6e-06 26.5 0.3 1 23 561 583 561 583 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF181-201 - 615 2.5e-51 169.4 95.3 12 12 3.1 3.9e+03 -1.3 0.1 5 12 605 612 603 614 0.81 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZNF181-201 - 615 6.2e-32 107.5 87.5 1 11 1.7e-05 0.021 15.6 0.3 1 23 281 303 281 304 0.86 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF181-201 - 615 6.2e-32 107.5 87.5 2 11 6.4e-06 0.0083 16.9 1.4 1 23 309 331 309 332 0.91 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF181-201 - 615 6.2e-32 107.5 87.5 3 11 6e-05 0.077 13.9 1.4 1 23 337 359 337 360 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF181-201 - 615 6.2e-32 107.5 87.5 4 11 2.1e-05 0.026 15.3 0.9 1 23 365 387 365 388 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF181-201 - 615 6.2e-32 107.5 87.5 5 11 6.2e-05 0.079 13.8 1.7 1 23 393 415 393 416 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF181-201 - 615 6.2e-32 107.5 87.5 6 11 7.8e-05 0.1 13.5 6.3 1 23 421 443 421 444 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF181-201 - 615 6.2e-32 107.5 87.5 7 11 0.00055 0.7 10.9 1.0 1 23 449 471 449 472 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF181-201 - 615 6.2e-32 107.5 87.5 8 11 2.9e-05 0.037 14.9 0.9 1 23 477 499 477 500 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF181-201 - 615 6.2e-32 107.5 87.5 9 11 1.8e-05 0.023 15.5 2.5 1 23 505 527 505 528 0.89 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF181-201 - 615 6.2e-32 107.5 87.5 10 11 1.2e-05 0.015 16.1 1.9 1 23 533 555 533 556 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF181-201 - 615 6.2e-32 107.5 87.5 11 11 4.9e-05 0.063 14.1 0.3 1 23 561 583 561 584 0.89 C2H2-type zinc finger KRAB PF01352.27 42 ZNF181-201 - 615 3.3e-22 77.9 0.5 1 1 4.6e-25 5.9e-22 77.1 0.5 2 42 48 88 47 88 0.99 KRAB box zf-C2H2_6 PF13912.6 27 ZNF181-201 - 615 2.2e-21 75.4 83.3 1 12 0.00017 0.22 11.6 0.1 2 20 281 299 280 303 0.82 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF181-201 - 615 2.2e-21 75.4 83.3 2 12 8.6e-07 0.0011 18.9 2.2 2 25 309 332 309 334 0.95 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF181-201 - 615 2.2e-21 75.4 83.3 3 12 0.0013 1.7 8.7 2.1 2 24 337 359 337 362 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF181-201 - 615 2.2e-21 75.4 83.3 4 12 0.00026 0.33 11.0 0.7 2 24 365 387 365 390 0.92 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF181-201 - 615 2.2e-21 75.4 83.3 5 12 0.0092 12 6.1 0.4 2 11 393 402 392 415 0.86 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF181-201 - 615 2.2e-21 75.4 83.3 6 12 0.079 1e+02 3.1 2.9 2 11 421 430 421 431 0.96 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF181-201 - 615 2.2e-21 75.4 83.3 7 12 0.00011 0.14 12.2 1.0 2 14 449 461 448 471 0.90 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF181-201 - 615 2.2e-21 75.4 83.3 8 12 4.5e-08 5.8e-05 23.0 0.7 2 24 477 499 477 501 0.98 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF181-201 - 615 2.2e-21 75.4 83.3 9 12 0.00053 0.67 10.0 0.6 2 12 505 515 505 527 0.89 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF181-201 - 615 2.2e-21 75.4 83.3 10 12 0.042 54 4.0 1.7 2 12 533 543 533 555 0.84 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF181-201 - 615 2.2e-21 75.4 83.3 11 12 7.3e-07 0.00093 19.1 0.8 2 24 561 583 561 586 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF181-201 - 615 2.2e-21 75.4 83.3 12 12 4.9 6.3e+03 -2.6 0.1 6 13 605 612 605 614 0.81 C2H2-type zinc finger Zn-ribbon_8 PF09723.10 40 ZNF181-201 - 615 3.2e-11 43.1 49.5 1 9 0.028 35 4.6 0.0 6 15 281 290 279 302 0.87 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF181-201 - 615 3.2e-11 43.1 49.5 2 9 0.00015 0.19 11.9 3.8 6 35 309 345 308 349 0.82 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF181-201 - 615 3.2e-11 43.1 49.5 3 9 9.9e-05 0.13 12.4 2.3 6 39 337 377 336 377 0.84 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF181-201 - 615 3.2e-11 43.1 49.5 4 9 0.00056 0.72 10.0 2.2 6 34 365 400 364 402 0.81 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF181-201 - 615 3.2e-11 43.1 49.5 5 9 0.00037 0.48 10.6 2.8 6 34 393 428 392 431 0.92 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF181-201 - 615 3.2e-11 43.1 49.5 6 9 0.00061 0.78 9.9 3.2 5 34 448 484 447 489 0.84 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF181-201 - 615 3.2e-11 43.1 49.5 7 9 0.017 22 5.2 0.6 6 20 477 491 475 495 0.88 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF181-201 - 615 3.2e-11 43.1 49.5 8 9 0.0015 1.9 8.7 2.1 6 34 505 540 504 541 0.87 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF181-201 - 615 3.2e-11 43.1 49.5 9 9 1.3e-05 0.016 15.3 3.3 6 37 533 571 532 573 0.92 Zinc ribbon domain zf-C2H2_jaz PF12171.8 27 ZNF181-201 - 615 1.5e-09 37.9 53.5 1 11 0.0082 10 6.5 0.0 2 22 281 301 280 301 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF181-201 - 615 1.5e-09 37.9 53.5 2 11 0.0003 0.38 11.1 0.1 2 24 309 331 308 332 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF181-201 - 615 1.5e-09 37.9 53.5 3 11 2.6e-05 0.033 14.5 0.7 2 24 337 359 336 359 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF181-201 - 615 1.5e-09 37.9 53.5 4 11 0.0042 5.4 7.4 0.0 2 22 365 385 364 385 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF181-201 - 615 1.5e-09 37.9 53.5 5 11 0.035 44 4.5 0.4 2 22 393 413 392 413 0.88 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF181-201 - 615 1.5e-09 37.9 53.5 6 11 2 2.6e+03 -1.1 0.2 2 11 421 430 420 430 0.87 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF181-201 - 615 1.5e-09 37.9 53.5 7 11 0.43 5.5e+02 1.0 1.1 1 21 448 468 448 469 0.90 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF181-201 - 615 1.5e-09 37.9 53.5 8 11 0.011 15 6.1 0.7 2 23 477 498 476 500 0.90 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF181-201 - 615 1.5e-09 37.9 53.5 9 11 0.0015 1.9 8.8 0.2 2 20 505 523 504 524 0.95 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF181-201 - 615 1.5e-09 37.9 53.5 10 11 0.061 78 3.7 0.3 2 21 533 552 532 553 0.88 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF181-201 - 615 1.5e-09 37.9 53.5 11 11 0.0044 5.6 7.4 0.0 2 22 561 581 560 581 0.93 Zinc-finger double-stranded RNA-binding # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF181-201.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF181-201.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF181-201.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF181-201.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF181-201.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:00:54 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZNF181-202 - 507 1.2e-86 281.5 87.0 1 12 9.8e-05 0.12 12.9 1.5 12 25 170 183 166 184 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF181-202 - 507 1.2e-86 281.5 87.0 2 12 1e-11 1.2e-08 35.0 0.9 2 26 188 212 187 212 0.97 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF181-202 - 507 1.2e-86 281.5 87.0 3 12 9.6e-12 1.1e-08 35.0 0.7 1 26 215 240 215 240 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF181-202 - 507 1.2e-86 281.5 87.0 4 12 1.4e-11 1.7e-08 34.5 0.6 1 25 243 267 243 268 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF181-202 - 507 1.2e-86 281.5 87.0 5 12 2.5e-09 3e-06 27.4 0.7 1 26 271 296 271 296 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF181-202 - 507 1.2e-86 281.5 87.0 6 12 4.7e-10 5.6e-07 29.7 1.3 3 24 301 322 299 322 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF181-202 - 507 1.2e-86 281.5 87.0 7 12 2.3e-10 2.7e-07 30.7 2.1 1 26 327 352 327 352 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF181-202 - 507 1.2e-86 281.5 87.0 8 12 8.9e-10 1.1e-06 28.8 0.8 2 25 356 379 356 380 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF181-202 - 507 1.2e-86 281.5 87.0 9 12 3.2e-09 3.8e-06 27.1 0.5 1 26 383 408 383 408 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF181-202 - 507 1.2e-86 281.5 87.0 10 12 1.9e-10 2.3e-07 30.9 3.0 2 25 412 435 411 436 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF181-202 - 507 1.2e-86 281.5 87.0 11 12 7e-12 8.3e-09 35.5 0.6 1 25 439 463 439 464 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF181-202 - 507 1.2e-86 281.5 87.0 12 12 0.00047 0.56 10.7 0.4 1 14 467 480 467 502 0.82 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZNF181-202 - 507 1.9e-52 172.9 95.3 1 12 9.3e-07 0.0011 19.3 0.2 1 23 173 195 173 195 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF181-202 - 507 1.9e-52 172.9 95.3 2 12 1.1e-07 0.00014 22.2 1.7 1 23 201 223 201 223 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF181-202 - 507 1.9e-52 172.9 95.3 3 12 1.1e-06 0.0013 19.1 1.5 1 23 229 251 229 251 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF181-202 - 507 1.9e-52 172.9 95.3 4 12 1.3e-08 1.5e-05 25.2 1.1 1 23 257 279 257 279 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF181-202 - 507 1.9e-52 172.9 95.3 5 12 7.3e-08 8.7e-05 22.8 2.3 1 23 285 307 285 307 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF181-202 - 507 1.9e-52 172.9 95.3 6 12 5.5e-06 0.0066 16.8 7.0 1 23 313 335 313 335 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF181-202 - 507 1.9e-52 172.9 95.3 7 12 2.1e-06 0.0025 18.2 0.7 1 23 341 363 341 363 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF181-202 - 507 1.9e-52 172.9 95.3 8 12 7.2e-07 0.00086 19.6 1.7 1 23 369 391 369 391 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF181-202 - 507 1.9e-52 172.9 95.3 9 12 6.3e-08 7.5e-05 23.0 3.1 1 23 397 419 397 419 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF181-202 - 507 1.9e-52 172.9 95.3 10 12 5.1e-06 0.0061 17.0 2.1 1 23 425 447 425 447 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF181-202 - 507 1.9e-52 172.9 95.3 11 12 3.7e-09 4.4e-06 26.8 0.3 1 23 453 475 453 475 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF181-202 - 507 1.9e-52 172.9 95.3 12 12 2.6 3.2e+03 -1.0 0.1 5 12 497 504 495 506 0.81 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZNF181-202 - 507 5.1e-33 110.9 87.5 1 11 1.4e-05 0.017 15.9 0.3 1 23 173 195 173 196 0.86 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF181-202 - 507 5.1e-33 110.9 87.5 2 11 5.5e-06 0.0065 17.2 1.4 1 23 201 223 201 224 0.91 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF181-202 - 507 5.1e-33 110.9 87.5 3 11 5.1e-05 0.061 14.2 1.4 1 23 229 251 229 252 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF181-202 - 507 5.1e-33 110.9 87.5 4 11 1.8e-05 0.021 15.6 0.9 1 23 257 279 257 280 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF181-202 - 507 5.1e-33 110.9 87.5 5 11 5.2e-05 0.063 14.2 1.7 1 23 285 307 285 308 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF181-202 - 507 5.1e-33 110.9 87.5 6 11 6.7e-05 0.079 13.8 6.3 1 23 313 335 313 336 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF181-202 - 507 5.1e-33 110.9 87.5 7 11 0.00046 0.55 11.2 1.0 1 23 341 363 341 364 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF181-202 - 507 5.1e-33 110.9 87.5 8 11 2.4e-05 0.029 15.2 0.9 1 23 369 391 369 392 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF181-202 - 507 5.1e-33 110.9 87.5 9 11 1.5e-05 0.018 15.8 2.5 1 23 397 419 397 420 0.90 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF181-202 - 507 5.1e-33 110.9 87.5 10 11 1e-05 0.012 16.4 1.9 1 23 425 447 425 448 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF181-202 - 507 5.1e-33 110.9 87.5 11 11 4.2e-05 0.05 14.5 0.3 1 23 453 475 453 476 0.89 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF181-202 - 507 1.7e-22 78.9 83.3 1 12 0.00014 0.17 11.9 0.1 2 20 173 191 172 195 0.82 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF181-202 - 507 1.7e-22 78.9 83.3 2 12 7.4e-07 0.00088 19.2 2.2 2 25 201 224 201 226 0.95 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF181-202 - 507 1.7e-22 78.9 83.3 3 12 0.0011 1.4 9.0 2.1 2 24 229 251 229 254 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF181-202 - 507 1.7e-22 78.9 83.3 4 12 0.00022 0.26 11.3 0.7 2 24 257 279 257 282 0.92 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF181-202 - 507 1.7e-22 78.9 83.3 5 12 0.0079 9.4 6.4 0.4 2 11 285 294 284 307 0.86 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF181-202 - 507 1.7e-22 78.9 83.3 6 12 0.068 81 3.4 2.9 2 11 313 322 313 323 0.96 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF181-202 - 507 1.7e-22 78.9 83.3 7 12 9.3e-05 0.11 12.5 1.0 2 14 341 353 340 363 0.90 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF181-202 - 507 1.7e-22 78.9 83.3 8 12 3.8e-08 4.6e-05 23.3 0.7 2 24 369 391 369 393 0.98 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF181-202 - 507 1.7e-22 78.9 83.3 9 12 0.00045 0.54 10.3 0.6 2 12 397 407 397 419 0.89 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF181-202 - 507 1.7e-22 78.9 83.3 10 12 0.036 43 4.3 1.7 2 12 425 435 425 447 0.83 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF181-202 - 507 1.7e-22 78.9 83.3 11 12 6.2e-07 0.00074 19.5 0.8 2 24 453 475 453 478 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF181-202 - 507 1.7e-22 78.9 83.3 12 12 4.3 5.1e+03 -2.4 0.1 6 13 497 504 497 506 0.81 C2H2-type zinc finger Zn-ribbon_8 PF09723.10 40 ZNF181-202 - 507 7.3e-12 45.2 50.1 1 10 0.025 29 4.9 0.1 6 15 173 182 171 192 0.87 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF181-202 - 507 7.3e-12 45.2 50.1 2 10 0.00012 0.14 12.3 3.8 6 35 201 237 200 241 0.82 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF181-202 - 507 7.3e-12 45.2 50.1 3 10 6.1e-05 0.073 13.2 2.0 6 39 229 269 227 270 0.84 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF181-202 - 507 7.3e-12 45.2 50.1 4 10 0.00083 0.99 9.6 2.2 6 33 257 291 256 292 0.79 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF181-202 - 507 7.3e-12 45.2 50.1 5 10 0.00033 0.39 10.9 2.9 6 34 285 320 284 323 0.92 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF181-202 - 507 7.3e-12 45.2 50.1 6 10 0.024 29 4.9 1.4 6 15 313 322 311 337 0.89 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF181-202 - 507 7.3e-12 45.2 50.1 7 10 0.0006 0.72 10.0 3.4 5 34 340 376 339 381 0.84 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF181-202 - 507 7.3e-12 45.2 50.1 8 10 0.015 18 5.5 0.5 6 20 369 383 368 387 0.87 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF181-202 - 507 7.3e-12 45.2 50.1 9 10 0.0036 4.3 7.5 2.1 6 33 397 431 396 431 0.86 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF181-202 - 507 7.3e-12 45.2 50.1 10 10 1.1e-05 0.013 15.6 3.3 6 37 425 463 424 465 0.92 Zinc ribbon domain zf-C2H2_jaz PF12171.8 27 ZNF181-202 - 507 2.1e-09 37.4 57.3 1 12 0.007 8.4 6.8 0.0 2 22 173 193 172 193 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF181-202 - 507 2.1e-09 37.4 57.3 2 12 0.00025 0.3 11.4 0.1 2 24 201 223 200 224 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF181-202 - 507 2.1e-09 37.4 57.3 3 12 2.2e-05 0.027 14.8 0.7 2 24 229 251 228 251 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF181-202 - 507 2.1e-09 37.4 57.3 4 12 0.0036 4.3 7.7 0.0 2 22 257 277 256 277 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF181-202 - 507 2.1e-09 37.4 57.3 5 12 0.03 35 4.8 0.4 2 22 285 305 284 305 0.88 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF181-202 - 507 2.1e-09 37.4 57.3 6 12 4.3 5.1e+03 -2.1 1.4 2 11 313 322 312 323 0.88 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF181-202 - 507 2.1e-09 37.4 57.3 7 12 0.37 4.4e+02 1.3 1.1 1 21 340 360 340 361 0.90 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF181-202 - 507 2.1e-09 37.4 57.3 8 12 0.0097 12 6.4 0.7 2 23 369 390 368 392 0.90 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF181-202 - 507 2.1e-09 37.4 57.3 9 12 0.0013 1.6 9.1 0.2 2 20 397 415 396 416 0.95 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF181-202 - 507 2.1e-09 37.4 57.3 10 12 0.052 62 4.0 0.3 2 21 425 444 424 445 0.88 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF181-202 - 507 2.1e-09 37.4 57.3 11 12 0.0038 4.5 7.7 0.0 2 22 453 473 452 473 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF181-202 - 507 2.1e-09 37.4 57.3 12 12 9.3 1.1e+04 -3.1 0.0 6 14 497 505 496 506 0.79 Zinc-finger double-stranded RNA-binding # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF181-202.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF181-202.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF181-202.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF181-202.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF181-202.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:00:55 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZNF181-203 - 570 5.4e-86 279.5 86.7 1 12 0.00012 0.14 12.6 1.5 12 25 233 246 230 247 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF181-203 - 570 5.4e-86 279.5 86.7 2 12 1.2e-11 1.4e-08 34.8 0.9 2 26 251 275 250 275 0.97 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF181-203 - 570 5.4e-86 279.5 86.7 3 12 1.1e-11 1.3e-08 34.8 0.7 1 26 278 303 278 303 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF181-203 - 570 5.4e-86 279.5 86.7 4 12 1.6e-11 1.9e-08 34.3 0.6 1 25 306 330 306 331 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF181-203 - 570 5.4e-86 279.5 86.7 5 12 2.9e-09 3.5e-06 27.2 0.7 1 26 334 359 334 359 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF181-203 - 570 5.4e-86 279.5 86.7 6 12 5.4e-10 6.5e-07 29.5 1.3 3 24 364 385 362 385 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF181-203 - 570 5.4e-86 279.5 86.7 7 12 2.6e-10 3.2e-07 30.5 2.1 1 26 390 415 390 415 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF181-203 - 570 5.4e-86 279.5 86.7 8 12 1e-09 1.2e-06 28.6 0.8 2 25 419 442 419 443 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF181-203 - 570 5.4e-86 279.5 86.7 9 12 3.7e-09 4.4e-06 26.9 0.5 1 26 446 471 446 471 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF181-203 - 570 5.4e-86 279.5 86.7 10 12 2.2e-10 2.6e-07 30.8 3.0 2 25 475 498 474 499 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF181-203 - 570 5.4e-86 279.5 86.7 11 12 8e-12 9.6e-09 35.3 0.6 1 25 502 526 502 527 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF181-203 - 570 5.4e-86 279.5 86.7 12 12 0.00052 0.62 10.6 0.3 1 14 530 543 530 565 0.82 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZNF181-203 - 570 9.4e-52 170.7 95.3 1 12 1.1e-06 0.0013 19.1 0.2 1 23 236 258 236 258 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF181-203 - 570 9.4e-52 170.7 95.3 2 12 1.3e-07 0.00016 22.0 1.7 1 23 264 286 264 286 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF181-203 - 570 9.4e-52 170.7 95.3 3 12 1.2e-06 0.0015 18.9 1.5 1 23 292 314 292 314 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF181-203 - 570 9.4e-52 170.7 95.3 4 12 1.5e-08 1.7e-05 25.0 1.1 1 23 320 342 320 342 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF181-203 - 570 9.4e-52 170.7 95.3 5 12 8.4e-08 0.0001 22.6 2.3 1 23 348 370 348 370 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF181-203 - 570 9.4e-52 170.7 95.3 6 12 6.3e-06 0.0076 16.7 7.0 1 23 376 398 376 398 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF181-203 - 570 9.4e-52 170.7 95.3 7 12 2.4e-06 0.0029 18.0 0.7 1 23 404 426 404 426 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF181-203 - 570 9.4e-52 170.7 95.3 8 12 8.3e-07 0.00099 19.4 1.7 1 23 432 454 432 454 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF181-203 - 570 9.4e-52 170.7 95.3 9 12 7.2e-08 8.7e-05 22.8 3.1 1 23 460 482 460 482 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF181-203 - 570 9.4e-52 170.7 95.3 10 12 5.9e-06 0.007 16.8 2.1 1 23 488 510 488 510 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF181-203 - 570 9.4e-52 170.7 95.3 11 12 4.3e-09 5.1e-06 26.6 0.3 1 23 516 538 516 538 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF181-203 - 570 9.4e-52 170.7 95.3 12 12 3 3.6e+03 -1.2 0.1 5 12 560 567 558 569 0.81 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZNF181-203 - 570 2.5e-32 108.8 87.5 1 11 1.6e-05 0.019 15.7 0.3 1 23 236 258 236 259 0.86 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF181-203 - 570 2.5e-32 108.8 87.5 2 11 6.3e-06 0.0075 17.0 1.4 1 23 264 286 264 287 0.91 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF181-203 - 570 2.5e-32 108.8 87.5 3 11 5.9e-05 0.07 14.0 1.4 1 23 292 314 292 315 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF181-203 - 570 2.5e-32 108.8 87.5 4 11 2e-05 0.024 15.4 0.9 1 23 320 342 320 343 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF181-203 - 570 2.5e-32 108.8 87.5 5 11 6e-05 0.072 14.0 1.7 1 23 348 370 348 371 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF181-203 - 570 2.5e-32 108.8 87.5 6 11 7.7e-05 0.092 13.6 6.3 1 23 376 398 376 399 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF181-203 - 570 2.5e-32 108.8 87.5 7 11 0.00053 0.64 11.0 1.0 1 23 404 426 404 427 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF181-203 - 570 2.5e-32 108.8 87.5 8 11 2.8e-05 0.033 15.0 0.9 1 23 432 454 432 455 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF181-203 - 570 2.5e-32 108.8 87.5 9 11 1.8e-05 0.021 15.6 2.5 1 23 460 482 460 483 0.89 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF181-203 - 570 2.5e-32 108.8 87.5 10 11 1.2e-05 0.014 16.2 1.9 1 23 488 510 488 511 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF181-203 - 570 2.5e-32 108.8 87.5 11 11 4.8e-05 0.057 14.3 0.3 1 23 516 538 516 539 0.89 C2H2-type zinc finger KRAB PF01352.27 42 ZNF181-203 - 570 1.9e-22 78.6 0.6 1 1 2.9e-25 3.4e-22 77.8 0.6 2 42 4 44 3 44 0.98 KRAB box zf-C2H2_6 PF13912.6 27 ZNF181-203 - 570 8e-22 76.7 83.3 1 12 0.00017 0.2 11.7 0.1 2 20 236 254 235 258 0.82 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF181-203 - 570 8e-22 76.7 83.3 2 12 8.5e-07 0.001 19.0 2.2 2 25 264 287 264 289 0.95 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF181-203 - 570 8e-22 76.7 83.3 3 12 0.0013 1.6 8.8 2.1 2 24 292 314 292 317 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF181-203 - 570 8e-22 76.7 83.3 4 12 0.00025 0.3 11.1 0.7 2 24 320 342 320 345 0.92 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF181-203 - 570 8e-22 76.7 83.3 5 12 0.009 11 6.2 0.4 2 11 348 357 347 370 0.86 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF181-203 - 570 8e-22 76.7 83.3 6 12 0.078 93 3.2 2.9 2 11 376 385 376 386 0.96 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF181-203 - 570 8e-22 76.7 83.3 7 12 0.00011 0.13 12.3 1.0 2 14 404 416 403 426 0.90 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF181-203 - 570 8e-22 76.7 83.3 8 12 4.4e-08 5.3e-05 23.1 0.7 2 24 432 454 432 456 0.98 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF181-203 - 570 8e-22 76.7 83.3 9 12 0.00052 0.62 10.1 0.6 2 12 460 470 460 482 0.89 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF181-203 - 570 8e-22 76.7 83.3 10 12 0.041 49 4.1 1.7 2 12 488 498 488 510 0.84 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF181-203 - 570 8e-22 76.7 83.3 11 12 7.1e-07 0.00085 19.3 0.8 2 24 516 538 516 541 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF181-203 - 570 8e-22 76.7 83.3 12 12 4.9 5.8e+03 -2.5 0.1 6 13 560 567 560 569 0.81 C2H2-type zinc finger Zn-ribbon_8 PF09723.10 40 ZNF181-203 - 570 5e-11 42.5 51.1 1 10 0.028 33 4.7 0.1 6 15 236 245 234 256 0.87 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF181-203 - 570 5e-11 42.5 51.1 2 10 0.00014 0.17 12.0 3.9 6 35 264 300 263 304 0.82 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF181-203 - 570 5e-11 42.5 51.1 3 10 7.6e-05 0.091 12.9 2.1 6 39 292 332 291 333 0.84 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF181-203 - 570 5e-11 42.5 51.1 4 10 0.00029 0.34 11.1 1.6 6 34 320 355 319 360 0.81 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF181-203 - 570 5e-11 42.5 51.1 5 10 0.00056 0.66 10.1 3.4 6 34 348 383 347 386 0.92 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF181-203 - 570 5e-11 42.5 51.1 6 10 0.042 50 4.1 1.9 6 15 376 385 375 399 0.89 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF181-203 - 570 5e-11 42.5 51.1 7 10 0.0006 0.72 10.0 3.2 5 34 403 439 402 444 0.84 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF181-203 - 570 5e-11 42.5 51.1 8 10 0.017 20 5.4 0.6 6 20 432 446 430 450 0.88 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF181-203 - 570 5e-11 42.5 51.1 9 10 0.0014 1.7 8.8 2.1 6 34 460 495 459 496 0.87 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF181-203 - 570 5e-11 42.5 51.1 10 10 1.2e-05 0.015 15.4 3.3 6 37 488 526 487 528 0.92 Zinc ribbon domain zf-C2H2_jaz PF12171.8 27 ZNF181-203 - 570 9.4e-09 35.3 57.3 1 11 0.008 9.6 6.6 0.0 2 22 236 256 235 256 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF181-203 - 570 9.4e-09 35.3 57.3 2 11 0.00029 0.35 11.2 0.1 2 24 264 286 263 287 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF181-203 - 570 9.4e-09 35.3 57.3 3 11 2.6e-05 0.03 14.6 0.7 2 24 292 314 291 314 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF181-203 - 570 9.4e-09 35.3 57.3 4 11 0.0042 5 7.5 0.0 2 22 320 340 319 340 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF181-203 - 570 9.4e-09 35.3 57.3 5 11 0.034 41 4.6 0.4 2 22 348 368 347 368 0.88 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF181-203 - 570 9.4e-09 35.3 57.3 6 11 4.9 5.8e+03 -2.2 1.4 2 11 376 385 375 386 0.88 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF181-203 - 570 9.4e-09 35.3 57.3 7 11 0.42 5e+02 1.2 1.1 1 21 403 423 403 424 0.90 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF181-203 - 570 9.4e-09 35.3 57.3 8 11 0.011 13 6.2 0.7 2 23 432 453 431 455 0.90 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF181-203 - 570 9.4e-09 35.3 57.3 9 11 0.0015 1.8 9.0 0.2 2 20 460 478 459 479 0.95 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF181-203 - 570 9.4e-09 35.3 57.3 10 11 0.06 71 3.9 0.3 2 21 488 507 487 508 0.88 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF181-203 - 570 9.4e-09 35.3 57.3 11 11 0.0043 5.2 7.5 0.0 2 22 516 536 515 536 0.93 Zinc-finger double-stranded RNA-binding # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF181-203.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF181-203.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF181-203.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF181-203.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF181-203.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:00:55 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZNF181-204 - 571 5.6e-86 279.5 86.7 1 12 0.00013 0.14 12.6 1.5 12 25 234 247 231 248 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF181-204 - 571 5.6e-86 279.5 86.7 2 12 1.3e-11 1.4e-08 34.8 0.9 2 26 252 276 251 276 0.97 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF181-204 - 571 5.6e-86 279.5 86.7 3 12 1.2e-11 1.3e-08 34.8 0.7 1 26 279 304 279 304 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF181-204 - 571 5.6e-86 279.5 86.7 4 12 1.7e-11 1.9e-08 34.3 0.6 1 25 307 331 307 332 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF181-204 - 571 5.6e-86 279.5 86.7 5 12 3.1e-09 3.5e-06 27.2 0.7 1 26 335 360 335 360 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF181-204 - 571 5.6e-86 279.5 86.7 6 12 5.8e-10 6.5e-07 29.5 1.3 3 24 365 386 363 386 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF181-204 - 571 5.6e-86 279.5 86.7 7 12 2.8e-10 3.2e-07 30.5 2.1 1 26 391 416 391 416 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF181-204 - 571 5.6e-86 279.5 86.7 8 12 1.1e-09 1.2e-06 28.6 0.8 2 25 420 443 420 444 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF181-204 - 571 5.6e-86 279.5 86.7 9 12 3.9e-09 4.4e-06 26.9 0.5 1 26 447 472 447 472 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF181-204 - 571 5.6e-86 279.5 86.7 10 12 2.3e-10 2.6e-07 30.7 3.0 2 25 476 499 475 500 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF181-204 - 571 5.6e-86 279.5 86.7 11 12 8.6e-12 9.6e-09 35.3 0.6 1 25 503 527 503 528 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF181-204 - 571 5.6e-86 279.5 86.7 12 12 0.00055 0.62 10.6 0.3 1 14 531 544 531 566 0.82 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZNF181-204 - 571 9.7e-52 170.7 95.3 1 12 1.1e-06 0.0013 19.1 0.2 1 23 237 259 237 259 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF181-204 - 571 9.7e-52 170.7 95.3 2 12 1.4e-07 0.00016 22.0 1.7 1 23 265 287 265 287 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF181-204 - 571 9.7e-52 170.7 95.3 3 12 1.3e-06 0.0015 18.9 1.5 1 23 293 315 293 315 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF181-204 - 571 9.7e-52 170.7 95.3 4 12 1.6e-08 1.7e-05 25.0 1.1 1 23 321 343 321 343 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF181-204 - 571 9.7e-52 170.7 95.3 5 12 9e-08 0.0001 22.6 2.3 1 23 349 371 349 371 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF181-204 - 571 9.7e-52 170.7 95.3 6 12 6.8e-06 0.0076 16.7 7.0 1 23 377 399 377 399 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF181-204 - 571 9.7e-52 170.7 95.3 7 12 2.6e-06 0.0029 18.0 0.7 1 23 405 427 405 427 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF181-204 - 571 9.7e-52 170.7 95.3 8 12 8.9e-07 0.00099 19.4 1.7 1 23 433 455 433 455 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF181-204 - 571 9.7e-52 170.7 95.3 9 12 7.7e-08 8.7e-05 22.8 3.1 1 23 461 483 461 483 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF181-204 - 571 9.7e-52 170.7 95.3 10 12 6.3e-06 0.007 16.8 2.1 1 23 489 511 489 511 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF181-204 - 571 9.7e-52 170.7 95.3 11 12 4.6e-09 5.1e-06 26.6 0.3 1 23 517 539 517 539 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF181-204 - 571 9.7e-52 170.7 95.3 12 12 3.2 3.6e+03 -1.2 0.1 5 12 561 568 559 570 0.81 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZNF181-204 - 571 2.5e-32 108.7 87.5 1 11 1.7e-05 0.019 15.7 0.3 1 23 237 259 237 260 0.86 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF181-204 - 571 2.5e-32 108.7 87.5 2 11 6.7e-06 0.0076 17.0 1.4 1 23 265 287 265 288 0.91 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF181-204 - 571 2.5e-32 108.7 87.5 3 11 6.3e-05 0.071 14.0 1.4 1 23 293 315 293 316 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF181-204 - 571 2.5e-32 108.7 87.5 4 11 2.2e-05 0.024 15.4 0.9 1 23 321 343 321 344 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF181-204 - 571 2.5e-32 108.7 87.5 5 11 6.4e-05 0.072 14.0 1.7 1 23 349 371 349 372 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF181-204 - 571 2.5e-32 108.7 87.5 6 11 8.2e-05 0.092 13.6 6.3 1 23 377 399 377 400 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF181-204 - 571 2.5e-32 108.7 87.5 7 11 0.00057 0.64 11.0 1.0 1 23 405 427 405 428 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF181-204 - 571 2.5e-32 108.7 87.5 8 11 3e-05 0.034 15.0 0.9 1 23 433 455 433 456 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF181-204 - 571 2.5e-32 108.7 87.5 9 11 1.9e-05 0.021 15.6 2.5 1 23 461 483 461 484 0.89 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF181-204 - 571 2.5e-32 108.7 87.5 10 11 1.2e-05 0.014 16.2 1.9 1 23 489 511 489 512 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF181-204 - 571 2.5e-32 108.7 87.5 11 11 5.1e-05 0.058 14.3 0.3 1 23 517 539 517 540 0.89 C2H2-type zinc finger KRAB PF01352.27 42 ZNF181-204 - 571 1.9e-22 78.6 0.6 1 1 3.1e-25 3.5e-22 77.8 0.6 2 42 4 44 3 44 0.98 KRAB box zf-C2H2_6 PF13912.6 27 ZNF181-204 - 571 8.2e-22 76.7 83.3 1 12 0.00018 0.2 11.7 0.1 2 20 237 255 236 259 0.82 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF181-204 - 571 8.2e-22 76.7 83.3 2 12 9e-07 0.001 19.0 2.2 2 25 265 288 265 290 0.95 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF181-204 - 571 8.2e-22 76.7 83.3 3 12 0.0014 1.6 8.8 2.1 2 24 293 315 293 318 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF181-204 - 571 8.2e-22 76.7 83.3 4 12 0.00027 0.3 11.1 0.7 2 24 321 343 321 346 0.92 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF181-204 - 571 8.2e-22 76.7 83.3 5 12 0.0096 11 6.2 0.4 2 11 349 358 348 371 0.86 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF181-204 - 571 8.2e-22 76.7 83.3 6 12 0.083 93 3.2 2.9 2 11 377 386 377 387 0.96 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF181-204 - 571 8.2e-22 76.7 83.3 7 12 0.00011 0.13 12.3 1.0 2 14 405 417 404 427 0.90 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF181-204 - 571 8.2e-22 76.7 83.3 8 12 4.7e-08 5.3e-05 23.1 0.7 2 24 433 455 433 457 0.98 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF181-204 - 571 8.2e-22 76.7 83.3 9 12 0.00055 0.62 10.1 0.6 2 12 461 471 461 483 0.89 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF181-204 - 571 8.2e-22 76.7 83.3 10 12 0.044 49 4.1 1.7 2 12 489 499 489 511 0.84 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF181-204 - 571 8.2e-22 76.7 83.3 11 12 7.6e-07 0.00085 19.3 0.8 2 24 517 539 517 542 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF181-204 - 571 8.2e-22 76.7 83.3 12 12 5.2 5.8e+03 -2.5 0.1 6 13 561 568 561 570 0.81 C2H2-type zinc finger Zn-ribbon_8 PF09723.10 40 ZNF181-204 - 571 2.9e-11 43.3 50.3 1 9 0.03 33 4.7 0.1 6 15 237 246 235 257 0.87 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF181-204 - 571 2.9e-11 43.3 50.3 2 9 0.00017 0.19 11.9 4.0 6 35 265 301 264 305 0.82 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF181-204 - 571 2.9e-11 43.3 50.3 3 9 0.00011 0.12 12.5 2.4 6 39 293 333 291 333 0.84 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF181-204 - 571 2.9e-11 43.3 50.3 4 9 0.00073 0.82 9.8 2.2 6 34 321 356 320 357 0.80 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF181-204 - 571 2.9e-11 43.3 50.3 5 9 0.0004 0.44 10.7 2.9 6 34 349 384 347 387 0.92 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF181-204 - 571 2.9e-11 43.3 50.3 6 9 0.00064 0.72 10.0 3.2 5 34 404 440 403 445 0.84 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF181-204 - 571 2.9e-11 43.3 50.3 7 9 0.018 20 5.4 0.6 6 20 433 447 431 451 0.88 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF181-204 - 571 2.9e-11 43.3 50.3 8 9 0.0016 1.8 8.7 2.2 6 34 461 496 460 497 0.87 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF181-204 - 571 2.9e-11 43.3 50.3 9 9 1.3e-05 0.014 15.5 3.2 6 37 489 527 488 529 0.92 Zinc ribbon domain zf-C2H2_jaz PF12171.8 27 ZNF181-204 - 571 9.7e-09 35.3 57.3 1 11 0.0086 9.6 6.6 0.0 2 22 237 257 236 257 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF181-204 - 571 9.7e-09 35.3 57.3 2 11 0.00031 0.35 11.2 0.1 2 24 265 287 264 288 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF181-204 - 571 9.7e-09 35.3 57.3 3 11 2.7e-05 0.031 14.6 0.7 2 24 293 315 292 315 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF181-204 - 571 9.7e-09 35.3 57.3 4 11 0.0044 5 7.5 0.0 2 22 321 341 320 341 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF181-204 - 571 9.7e-09 35.3 57.3 5 11 0.036 41 4.6 0.4 2 22 349 369 348 369 0.88 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF181-204 - 571 9.7e-09 35.3 57.3 6 11 5.2 5.8e+03 -2.2 1.4 2 11 377 386 376 387 0.88 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF181-204 - 571 9.7e-09 35.3 57.3 7 11 0.45 5e+02 1.2 1.1 1 21 404 424 404 425 0.90 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF181-204 - 571 9.7e-09 35.3 57.3 8 11 0.012 13 6.2 0.7 2 23 433 454 432 456 0.90 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF181-204 - 571 9.7e-09 35.3 57.3 9 11 0.0016 1.8 9.0 0.2 2 20 461 479 460 480 0.95 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF181-204 - 571 9.7e-09 35.3 57.3 10 11 0.064 71 3.9 0.3 2 21 489 508 488 509 0.88 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF181-204 - 571 9.7e-09 35.3 57.3 11 11 0.0046 5.2 7.5 0.0 2 22 517 537 516 537 0.93 Zinc-finger double-stranded RNA-binding # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF181-204.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF181-204.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF181-204.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF181-204.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF181-204.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:00:56 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF181-205.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF181-205.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF181-205.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF181-205.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF181-205.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:00:56 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF181-206.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF181-206.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF181-206.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF181-206.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF181-206.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:00:56 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF181-207.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF181-207.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF181-207.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF181-207.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF181-207.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:00:57 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- SCAN PF02023.17 90 ZNF18-201 - 549 2.2e-38 130.0 1.1 1 2 3e-41 2.2e-38 130.0 1.1 1 87 37 123 37 125 0.97 SCAN domain SCAN PF02023.17 90 ZNF18-201 - 549 2.2e-38 130.0 1.1 2 2 2 1.4e+03 -0.9 0.2 31 48 223 240 221 249 0.85 SCAN domain zf-H2C2_2 PF13465.6 26 ZNF18-201 - 549 9.3e-35 117.5 37.4 1 6 0.14 98 3.6 0.1 16 24 409 417 392 419 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF18-201 - 549 9.3e-35 117.5 37.4 2 6 1.3e-08 9.2e-06 25.9 0.6 4 25 425 446 422 447 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF18-201 - 549 9.3e-35 117.5 37.4 3 6 5.1e-09 3.6e-06 27.1 2.4 2 25 451 474 450 475 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF18-201 - 549 9.3e-35 117.5 37.4 4 6 4.9e-11 3.5e-08 33.5 1.3 1 24 478 501 478 503 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF18-201 - 549 9.3e-35 117.5 37.4 5 6 3.7e-12 2.7e-09 37.0 3.2 1 25 506 530 506 530 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF18-201 - 549 9.3e-35 117.5 37.4 6 6 0.00046 0.33 11.5 0.1 1 16 534 549 534 549 0.93 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZNF18-201 - 549 8.8e-24 82.6 42.6 1 5 2.1e-06 0.0015 18.9 1.8 2 23 409 430 409 430 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF18-201 - 549 8.8e-24 82.6 42.6 2 5 6.3e-07 0.00045 20.5 2.0 1 23 436 458 436 458 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF18-201 - 549 8.8e-24 82.6 42.6 3 5 5e-06 0.0036 17.7 3.4 2 23 465 486 464 486 0.95 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF18-201 - 549 8.8e-24 82.6 42.6 4 5 2.2e-09 1.6e-06 28.3 1.4 1 23 492 514 492 514 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF18-201 - 549 8.8e-24 82.6 42.6 5 5 7.4e-07 0.00053 20.3 3.7 1 23 520 542 520 542 0.99 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZNF18-201 - 549 1.1e-17 63.2 38.1 1 5 0.00014 0.097 13.6 0.8 2 23 409 430 408 431 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF18-201 - 549 1.1e-17 63.2 38.1 2 5 1.2e-05 0.0085 16.8 1.7 1 23 436 458 436 459 0.97 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF18-201 - 549 1.1e-17 63.2 38.1 3 5 2.4e-06 0.0017 19.0 2.8 2 23 465 486 464 487 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF18-201 - 549 1.1e-17 63.2 38.1 4 5 4.7e-06 0.0034 18.1 1.0 1 23 492 514 492 515 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF18-201 - 549 1.1e-17 63.2 38.1 5 5 1.2e-05 0.0083 16.9 3.1 1 23 520 542 520 543 0.91 C2H2-type zinc finger KRAB PF01352.27 42 ZNF18-201 - 549 2.4e-08 33.5 1.6 1 1 9e-11 6.5e-08 32.1 1.6 13 40 222 249 221 249 0.97 KRAB box zf-C2H2_jaz PF12171.8 27 ZNF18-201 - 549 1.2e-07 31.8 29.7 1 6 4.2 3e+03 -1.3 0.0 12 21 365 374 365 374 0.90 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF18-201 - 549 1.2e-07 31.8 29.7 2 6 0.0083 6 7.3 0.2 4 24 410 430 408 430 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF18-201 - 549 1.2e-07 31.8 29.7 3 6 0.00031 0.22 11.9 1.9 2 24 436 458 435 458 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF18-201 - 549 1.2e-07 31.8 29.7 4 6 0.14 1e+02 3.4 0.2 4 13 466 475 465 484 0.82 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF18-201 - 549 1.2e-07 31.8 29.7 5 6 0.00031 0.22 11.8 0.3 2 22 492 512 491 512 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF18-201 - 549 1.2e-07 31.8 29.7 6 6 5.3e-05 0.038 14.3 1.9 2 24 520 542 519 546 0.93 Zinc-finger double-stranded RNA-binding # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF18-201.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF18-201.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF18-201.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF18-201.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF18-201.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:00:57 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- SCAN PF02023.17 90 ZNF18-202 - 548 1.9e-38 130.1 4.0 1 2 3e-41 2.2e-38 130.0 1.1 1 87 37 123 37 125 0.97 SCAN domain SCAN PF02023.17 90 ZNF18-202 - 548 1.9e-38 130.1 4.0 2 2 1.6 1.1e+03 -0.6 0.1 31 48 223 240 221 252 0.83 SCAN domain zf-H2C2_2 PF13465.6 26 ZNF18-202 - 548 9.2e-35 117.5 37.4 1 6 0.14 98 3.6 0.1 16 24 408 416 391 418 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF18-202 - 548 9.2e-35 117.5 37.4 2 6 1.3e-08 9.2e-06 25.9 0.6 4 25 424 445 421 446 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF18-202 - 548 9.2e-35 117.5 37.4 3 6 5e-09 3.6e-06 27.1 2.4 2 25 450 473 449 474 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF18-202 - 548 9.2e-35 117.5 37.4 4 6 4.9e-11 3.5e-08 33.5 1.3 1 24 477 500 477 502 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF18-202 - 548 9.2e-35 117.5 37.4 5 6 3.7e-12 2.7e-09 37.0 3.2 1 25 505 529 505 529 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF18-202 - 548 9.2e-35 117.5 37.4 6 6 0.00045 0.33 11.5 0.1 1 16 533 548 533 548 0.93 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZNF18-202 - 548 8.7e-24 82.6 42.6 1 5 2.1e-06 0.0015 18.9 1.8 2 23 408 429 408 429 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF18-202 - 548 8.7e-24 82.6 42.6 2 5 6.3e-07 0.00045 20.5 2.0 1 23 435 457 435 457 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF18-202 - 548 8.7e-24 82.6 42.6 3 5 5e-06 0.0036 17.7 3.4 2 23 464 485 463 485 0.95 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF18-202 - 548 8.7e-24 82.6 42.6 4 5 2.2e-09 1.6e-06 28.3 1.4 1 23 491 513 491 513 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF18-202 - 548 8.7e-24 82.6 42.6 5 5 7.4e-07 0.00053 20.3 3.7 1 23 519 541 519 541 0.99 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZNF18-202 - 548 1.1e-17 63.2 38.1 1 5 0.00014 0.097 13.6 0.8 2 23 408 429 407 430 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF18-202 - 548 1.1e-17 63.2 38.1 2 5 1.2e-05 0.0085 16.9 1.7 1 23 435 457 435 458 0.97 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF18-202 - 548 1.1e-17 63.2 38.1 3 5 2.3e-06 0.0017 19.0 2.8 2 23 464 485 463 486 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF18-202 - 548 1.1e-17 63.2 38.1 4 5 4.7e-06 0.0033 18.1 1.0 1 23 491 513 491 514 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF18-202 - 548 1.1e-17 63.2 38.1 5 5 1.1e-05 0.0082 16.9 3.1 1 23 519 541 519 542 0.91 C2H2-type zinc finger KRAB PF01352.27 42 ZNF18-202 - 548 6.4e-09 35.3 0.6 1 1 2.2e-11 1.6e-08 34.1 0.6 13 40 222 249 221 251 0.95 KRAB box zf-C2H2_jaz PF12171.8 27 ZNF18-202 - 548 1.2e-07 31.8 29.7 1 6 4.2 3e+03 -1.3 0.0 12 21 364 373 364 373 0.90 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF18-202 - 548 1.2e-07 31.8 29.7 2 6 0.0083 6 7.3 0.2 4 24 409 429 407 429 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF18-202 - 548 1.2e-07 31.8 29.7 3 6 0.00031 0.22 11.9 1.9 2 24 435 457 434 457 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF18-202 - 548 1.2e-07 31.8 29.7 4 6 0.14 1e+02 3.4 0.2 4 13 465 474 464 483 0.82 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF18-202 - 548 1.2e-07 31.8 29.7 5 6 0.00031 0.22 11.8 0.3 2 22 491 511 490 511 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF18-202 - 548 1.2e-07 31.8 29.7 6 6 5.3e-05 0.038 14.3 1.9 2 24 519 541 518 545 0.93 Zinc-finger double-stranded RNA-binding # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF18-202.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF18-202.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF18-202.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF18-202.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF18-202.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:00:57 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF18-203.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF18-203.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF18-203.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF18-203.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF18-203.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:00:58 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- SCAN PF02023.17 90 ZNF18-204 - 549 2.2e-38 130.0 1.1 1 2 3e-41 2.2e-38 130.0 1.1 1 87 37 123 37 125 0.97 SCAN domain SCAN PF02023.17 90 ZNF18-204 - 549 2.2e-38 130.0 1.1 2 2 2 1.4e+03 -0.9 0.2 31 48 223 240 221 249 0.85 SCAN domain zf-H2C2_2 PF13465.6 26 ZNF18-204 - 549 9.3e-35 117.5 37.4 1 6 0.14 98 3.6 0.1 16 24 409 417 392 419 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF18-204 - 549 9.3e-35 117.5 37.4 2 6 1.3e-08 9.2e-06 25.9 0.6 4 25 425 446 422 447 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF18-204 - 549 9.3e-35 117.5 37.4 3 6 5.1e-09 3.6e-06 27.1 2.4 2 25 451 474 450 475 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF18-204 - 549 9.3e-35 117.5 37.4 4 6 4.9e-11 3.5e-08 33.5 1.3 1 24 478 501 478 503 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF18-204 - 549 9.3e-35 117.5 37.4 5 6 3.7e-12 2.7e-09 37.0 3.2 1 25 506 530 506 530 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF18-204 - 549 9.3e-35 117.5 37.4 6 6 0.00046 0.33 11.5 0.1 1 16 534 549 534 549 0.93 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZNF18-204 - 549 8.8e-24 82.6 42.6 1 5 2.1e-06 0.0015 18.9 1.8 2 23 409 430 409 430 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF18-204 - 549 8.8e-24 82.6 42.6 2 5 6.3e-07 0.00045 20.5 2.0 1 23 436 458 436 458 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF18-204 - 549 8.8e-24 82.6 42.6 3 5 5e-06 0.0036 17.7 3.4 2 23 465 486 464 486 0.95 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF18-204 - 549 8.8e-24 82.6 42.6 4 5 2.2e-09 1.6e-06 28.3 1.4 1 23 492 514 492 514 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF18-204 - 549 8.8e-24 82.6 42.6 5 5 7.4e-07 0.00053 20.3 3.7 1 23 520 542 520 542 0.99 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZNF18-204 - 549 1.1e-17 63.2 38.1 1 5 0.00014 0.097 13.6 0.8 2 23 409 430 408 431 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF18-204 - 549 1.1e-17 63.2 38.1 2 5 1.2e-05 0.0085 16.8 1.7 1 23 436 458 436 459 0.97 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF18-204 - 549 1.1e-17 63.2 38.1 3 5 2.4e-06 0.0017 19.0 2.8 2 23 465 486 464 487 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF18-204 - 549 1.1e-17 63.2 38.1 4 5 4.7e-06 0.0034 18.1 1.0 1 23 492 514 492 515 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF18-204 - 549 1.1e-17 63.2 38.1 5 5 1.2e-05 0.0083 16.9 3.1 1 23 520 542 520 543 0.91 C2H2-type zinc finger KRAB PF01352.27 42 ZNF18-204 - 549 2.4e-08 33.5 1.6 1 1 9e-11 6.5e-08 32.1 1.6 13 40 222 249 221 249 0.97 KRAB box zf-C2H2_jaz PF12171.8 27 ZNF18-204 - 549 1.2e-07 31.8 29.7 1 6 4.2 3e+03 -1.3 0.0 12 21 365 374 365 374 0.90 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF18-204 - 549 1.2e-07 31.8 29.7 2 6 0.0083 6 7.3 0.2 4 24 410 430 408 430 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF18-204 - 549 1.2e-07 31.8 29.7 3 6 0.00031 0.22 11.9 1.9 2 24 436 458 435 458 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF18-204 - 549 1.2e-07 31.8 29.7 4 6 0.14 1e+02 3.4 0.2 4 13 466 475 465 484 0.82 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF18-204 - 549 1.2e-07 31.8 29.7 5 6 0.00031 0.22 11.8 0.3 2 22 492 512 491 512 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF18-204 - 549 1.2e-07 31.8 29.7 6 6 5.3e-05 0.038 14.3 1.9 2 24 520 542 519 546 0.93 Zinc-finger double-stranded RNA-binding # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF18-204.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF18-204.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF18-204.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF18-204.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF18-204.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:00:58 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- SCAN PF02023.17 90 ZNF18-205 - 549 2.2e-38 130.0 1.1 1 2 3e-41 2.2e-38 130.0 1.1 1 87 37 123 37 125 0.97 SCAN domain SCAN PF02023.17 90 ZNF18-205 - 549 2.2e-38 130.0 1.1 2 2 2 1.4e+03 -0.9 0.2 31 48 223 240 221 249 0.85 SCAN domain zf-H2C2_2 PF13465.6 26 ZNF18-205 - 549 9.3e-35 117.5 37.4 1 6 0.14 98 3.6 0.1 16 24 409 417 392 419 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF18-205 - 549 9.3e-35 117.5 37.4 2 6 1.3e-08 9.2e-06 25.9 0.6 4 25 425 446 422 447 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF18-205 - 549 9.3e-35 117.5 37.4 3 6 5.1e-09 3.6e-06 27.1 2.4 2 25 451 474 450 475 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF18-205 - 549 9.3e-35 117.5 37.4 4 6 4.9e-11 3.5e-08 33.5 1.3 1 24 478 501 478 503 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF18-205 - 549 9.3e-35 117.5 37.4 5 6 3.7e-12 2.7e-09 37.0 3.2 1 25 506 530 506 530 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF18-205 - 549 9.3e-35 117.5 37.4 6 6 0.00046 0.33 11.5 0.1 1 16 534 549 534 549 0.93 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZNF18-205 - 549 8.8e-24 82.6 42.6 1 5 2.1e-06 0.0015 18.9 1.8 2 23 409 430 409 430 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF18-205 - 549 8.8e-24 82.6 42.6 2 5 6.3e-07 0.00045 20.5 2.0 1 23 436 458 436 458 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF18-205 - 549 8.8e-24 82.6 42.6 3 5 5e-06 0.0036 17.7 3.4 2 23 465 486 464 486 0.95 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF18-205 - 549 8.8e-24 82.6 42.6 4 5 2.2e-09 1.6e-06 28.3 1.4 1 23 492 514 492 514 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF18-205 - 549 8.8e-24 82.6 42.6 5 5 7.4e-07 0.00053 20.3 3.7 1 23 520 542 520 542 0.99 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZNF18-205 - 549 1.1e-17 63.2 38.1 1 5 0.00014 0.097 13.6 0.8 2 23 409 430 408 431 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF18-205 - 549 1.1e-17 63.2 38.1 2 5 1.2e-05 0.0085 16.8 1.7 1 23 436 458 436 459 0.97 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF18-205 - 549 1.1e-17 63.2 38.1 3 5 2.4e-06 0.0017 19.0 2.8 2 23 465 486 464 487 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF18-205 - 549 1.1e-17 63.2 38.1 4 5 4.7e-06 0.0034 18.1 1.0 1 23 492 514 492 515 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF18-205 - 549 1.1e-17 63.2 38.1 5 5 1.2e-05 0.0083 16.9 3.1 1 23 520 542 520 543 0.91 C2H2-type zinc finger KRAB PF01352.27 42 ZNF18-205 - 549 2.4e-08 33.5 1.6 1 1 9e-11 6.5e-08 32.1 1.6 13 40 222 249 221 249 0.97 KRAB box zf-C2H2_jaz PF12171.8 27 ZNF18-205 - 549 1.2e-07 31.8 29.7 1 6 4.2 3e+03 -1.3 0.0 12 21 365 374 365 374 0.90 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF18-205 - 549 1.2e-07 31.8 29.7 2 6 0.0083 6 7.3 0.2 4 24 410 430 408 430 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF18-205 - 549 1.2e-07 31.8 29.7 3 6 0.00031 0.22 11.9 1.9 2 24 436 458 435 458 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF18-205 - 549 1.2e-07 31.8 29.7 4 6 0.14 1e+02 3.4 0.2 4 13 466 475 465 484 0.82 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF18-205 - 549 1.2e-07 31.8 29.7 5 6 0.00031 0.22 11.8 0.3 2 22 492 512 491 512 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF18-205 - 549 1.2e-07 31.8 29.7 6 6 5.3e-05 0.038 14.3 1.9 2 24 520 542 519 546 0.93 Zinc-finger double-stranded RNA-binding # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF18-205.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF18-205.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF18-205.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF18-205.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF18-205.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:00:59 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF18-206.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF18-206.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF18-206.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF18-206.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF18-206.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:00:59 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF18-207.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF18-207.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF18-207.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF18-207.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF18-207.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:00:59 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZNF182-201 - 620 5.5e-106 342.7 103.2 1 15 1.4e-08 8.8e-06 25.9 0.2 1 25 201 225 201 226 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF182-201 - 620 5.5e-106 342.7 103.2 2 15 1.2e-07 7.5e-05 23.0 0.4 3 25 231 253 228 254 0.87 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF182-201 - 620 5.5e-106 342.7 103.2 3 15 4.6e-11 2.9e-08 33.8 0.2 5 24 261 280 258 281 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF182-201 - 620 5.5e-106 342.7 103.2 4 15 2.7e-10 1.7e-07 31.3 1.3 5 25 289 309 288 310 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF182-201 - 620 5.5e-106 342.7 103.2 5 15 1.1e-08 7.1e-06 26.2 0.3 1 24 313 336 313 338 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF182-201 - 620 5.5e-106 342.7 103.2 6 15 1.3e-07 8.3e-05 22.8 3.0 5 25 345 365 341 366 0.90 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF182-201 - 620 5.5e-106 342.7 103.2 7 15 7.3e-10 4.7e-07 30.0 1.5 5 25 373 393 370 394 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF182-201 - 620 5.5e-106 342.7 103.2 8 15 1.2e-11 7.5e-09 35.6 0.3 5 25 401 421 398 422 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF182-201 - 620 5.5e-106 342.7 103.2 9 15 2.1e-09 1.3e-06 28.5 0.3 5 25 429 449 425 450 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF182-201 - 620 5.5e-106 342.7 103.2 10 15 1e-10 6.7e-08 32.6 0.3 2 25 454 477 453 478 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF182-201 - 620 5.5e-106 342.7 103.2 11 15 6.5e-09 4.1e-06 27.0 1.0 5 24 485 504 481 505 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF182-201 - 620 5.5e-106 342.7 103.2 12 15 5e-10 3.2e-07 30.5 0.1 5 25 513 533 509 534 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF182-201 - 620 5.5e-106 342.7 103.2 13 15 9.9e-10 6.3e-07 29.5 0.3 5 24 541 560 538 561 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF182-201 - 620 5.5e-106 342.7 103.2 14 15 1.3e-10 8.2e-08 32.3 2.1 4 25 568 589 566 590 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF182-201 - 620 5.5e-106 342.7 103.2 15 15 1.1 7.2e+02 0.9 1.3 1 14 593 606 593 616 0.87 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZNF182-201 - 620 1.9e-90 292.5 97.2 1 15 0.024 15 6.3 0.0 5 21 191 207 190 208 0.93 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF182-201 - 620 1.9e-90 292.5 97.2 2 15 6.6e-07 0.00042 20.6 2.9 1 23 215 237 215 237 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF182-201 - 620 1.9e-90 292.5 97.2 3 15 2.9e-08 1.9e-05 24.9 0.3 3 23 245 265 243 265 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF182-201 - 620 1.9e-90 292.5 97.2 4 15 4.7e-07 0.0003 21.1 0.2 1 23 271 293 271 293 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF182-201 - 620 1.9e-90 292.5 97.2 5 15 5.2e-10 3.3e-07 30.4 0.3 1 23 299 321 299 321 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF182-201 - 620 1.9e-90 292.5 97.2 6 15 4.2e-06 0.0027 18.1 0.7 1 23 327 349 327 349 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF182-201 - 620 1.9e-90 292.5 97.2 7 15 5.6e-08 3.6e-05 24.0 2.5 1 23 355 377 355 377 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF182-201 - 620 1.9e-90 292.5 97.2 8 15 1.9e-08 1.2e-05 25.4 2.2 1 23 383 405 383 405 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF182-201 - 620 1.9e-90 292.5 97.2 9 15 1.5e-09 9.5e-07 28.9 0.5 1 23 411 433 411 433 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF182-201 - 620 1.9e-90 292.5 97.2 10 15 1.2e-07 7.8e-05 22.9 0.6 1 23 439 461 439 461 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF182-201 - 620 1.9e-90 292.5 97.2 11 15 1.7e-08 1.1e-05 25.6 0.5 1 23 467 489 467 489 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF182-201 - 620 1.9e-90 292.5 97.2 12 15 2.9e-08 1.9e-05 24.9 0.4 1 23 495 517 495 517 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF182-201 - 620 1.9e-90 292.5 97.2 13 15 7.1e-09 4.6e-06 26.8 0.2 1 23 523 545 523 545 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF182-201 - 620 1.9e-90 292.5 97.2 14 15 7.2e-08 4.6e-05 23.6 0.9 1 23 551 573 551 573 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF182-201 - 620 1.9e-90 292.5 97.2 15 15 1.5e-10 9.9e-08 32.0 0.7 1 23 579 601 579 601 0.99 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZNF182-201 - 620 4.6e-50 163.9 94.5 1 15 0.82 5.2e+02 1.9 0.0 5 21 191 207 190 209 0.89 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF182-201 - 620 4.6e-50 163.9 94.5 2 15 6.2e-06 0.004 17.9 2.8 1 23 215 237 215 238 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF182-201 - 620 4.6e-50 163.9 94.5 3 15 6.6e-06 0.0042 17.8 0.3 1 23 243 265 243 266 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF182-201 - 620 4.6e-50 163.9 94.5 4 15 2.6e-05 0.017 15.9 0.3 1 23 271 293 271 294 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF182-201 - 620 4.6e-50 163.9 94.5 5 15 6.3e-06 0.004 17.9 0.3 1 23 299 321 299 322 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF182-201 - 620 4.6e-50 163.9 94.5 6 15 0.00065 0.42 11.6 0.6 1 23 327 349 327 350 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF182-201 - 620 4.6e-50 163.9 94.5 7 15 1.9e-05 0.012 16.4 1.6 1 23 355 377 355 378 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF182-201 - 620 4.6e-50 163.9 94.5 8 15 3.9e-06 0.0025 18.5 1.6 1 23 383 405 383 406 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF182-201 - 620 4.6e-50 163.9 94.5 9 15 1.1e-06 0.00072 20.2 0.4 1 23 411 433 411 434 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF182-201 - 620 4.6e-50 163.9 94.5 10 15 0.001 0.64 11.0 0.7 1 23 439 461 439 462 0.90 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF182-201 - 620 4.6e-50 163.9 94.5 11 15 8.5e-05 0.055 14.3 0.5 1 23 467 489 467 490 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF182-201 - 620 4.6e-50 163.9 94.5 12 15 5.5e-05 0.035 14.9 0.3 1 23 495 517 495 518 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF182-201 - 620 4.6e-50 163.9 94.5 13 15 0.00036 0.23 12.4 0.4 1 23 523 545 523 546 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF182-201 - 620 4.6e-50 163.9 94.5 14 15 2.3e-05 0.015 16.1 0.7 1 23 551 573 551 574 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF182-201 - 620 4.6e-50 163.9 94.5 15 15 2.3e-06 0.0015 19.2 0.4 1 23 579 601 579 602 0.96 C2H2-type zinc finger KRAB PF01352.27 42 ZNF182-201 - 620 2e-25 88.1 0.8 1 1 5.8e-28 3.7e-25 87.3 0.8 1 42 7 48 7 48 0.98 KRAB box zf-C2H2_6 PF13912.6 27 ZNF182-201 - 620 1.4e-21 76.0 93.1 1 14 0.032 20 5.3 1.2 2 18 215 231 215 239 0.75 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF182-201 - 620 1.4e-21 76.0 93.1 2 14 0.001 0.66 10.1 0.4 2 24 243 265 243 268 0.89 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF182-201 - 620 1.4e-21 76.0 93.1 3 14 0.0029 1.8 8.6 0.4 2 12 271 281 271 281 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF182-201 - 620 1.4e-21 76.0 93.1 4 14 8.1e-05 0.052 13.6 0.7 2 24 299 321 299 324 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF182-201 - 620 1.4e-21 76.0 93.1 5 14 0.0066 4.2 7.5 0.4 2 11 327 336 326 338 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF182-201 - 620 1.4e-21 76.0 93.1 6 14 0.00025 0.16 12.0 0.6 2 12 355 365 355 379 0.85 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF182-201 - 620 1.4e-21 76.0 93.1 7 14 0.00018 0.12 12.4 1.1 2 12 383 393 383 407 0.78 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF182-201 - 620 1.4e-21 76.0 93.1 8 14 1.8e-06 0.0012 18.8 0.6 2 25 411 434 411 436 0.95 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF182-201 - 620 1.4e-21 76.0 93.1 9 14 0.017 11 6.2 1.5 2 12 439 449 439 452 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF182-201 - 620 1.4e-21 76.0 93.1 10 14 0.0041 2.6 8.1 0.6 2 12 467 477 467 492 0.79 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF182-201 - 620 1.4e-21 76.0 93.1 11 14 0.0033 2.1 8.4 0.7 2 12 495 505 495 506 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF182-201 - 620 1.4e-21 76.0 93.1 12 14 0.019 12 6.0 0.2 2 24 523 545 523 548 0.77 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF182-201 - 620 1.4e-21 76.0 93.1 13 14 0.0084 5.4 7.1 0.3 2 12 551 561 551 561 0.91 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF182-201 - 620 1.4e-21 76.0 93.1 14 14 0.00019 0.12 12.4 1.0 2 24 579 601 579 604 0.93 C2H2-type zinc finger zf-C2H2_jaz PF12171.8 27 ZNF182-201 - 620 3.5e-16 59.0 69.6 1 13 2.5e-05 0.016 15.5 0.5 2 24 215 237 214 237 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF182-201 - 620 3.5e-16 59.0 69.6 2 13 0.017 11 6.5 0.1 4 24 245 265 242 265 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF182-201 - 620 3.5e-16 59.0 69.6 3 13 0.0062 4 7.8 0.0 2 24 271 293 270 293 0.91 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF182-201 - 620 3.5e-16 59.0 69.6 4 13 0.057 36 4.8 0.6 2 24 299 321 298 321 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF182-201 - 620 3.5e-16 59.0 69.6 5 13 0.00016 0.1 12.9 3.5 2 27 355 384 354 384 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF182-201 - 620 3.5e-16 59.0 69.6 6 13 0.0003 0.19 12.0 0.7 2 24 383 405 382 405 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF182-201 - 620 3.5e-16 59.0 69.6 7 13 0.0023 1.5 9.2 0.1 2 24 411 433 410 434 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF182-201 - 620 3.5e-16 59.0 69.6 8 13 0.012 7.9 6.9 0.5 2 24 439 461 438 461 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF182-201 - 620 3.5e-16 59.0 69.6 9 13 0.12 76 3.8 1.0 2 23 467 488 466 489 0.84 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF182-201 - 620 3.5e-16 59.0 69.6 10 13 0.4 2.6e+02 2.1 0.2 2 21 495 514 494 515 0.81 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF182-201 - 620 3.5e-16 59.0 69.6 11 13 0.052 33 4.9 0.1 2 24 523 545 522 545 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF182-201 - 620 3.5e-16 59.0 69.6 12 13 0.0015 0.97 9.8 0.1 2 24 551 573 550 573 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF182-201 - 620 3.5e-16 59.0 69.6 13 13 0.015 9.7 6.6 0.6 2 24 579 601 578 607 0.89 Zinc-finger double-stranded RNA-binding Zn-ribbon_8 PF09723.10 40 ZNF182-201 - 620 6.4e-10 39.0 80.3 1 12 0.017 11 6.3 3.5 6 35 215 251 214 255 0.79 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF182-201 - 620 6.4e-10 39.0 80.3 2 12 0.00013 0.086 13.0 2.0 6 37 243 281 241 283 0.77 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF182-201 - 620 6.4e-10 39.0 80.3 3 12 2.1e-05 0.013 15.6 4.0 6 34 299 334 298 340 0.90 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF182-201 - 620 6.4e-10 39.0 80.3 4 12 0.003 1.9 8.7 4.8 6 34 327 362 326 365 0.83 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF182-201 - 620 6.4e-10 39.0 80.3 5 12 0.0052 3.3 7.9 4.7 7 34 356 390 355 395 0.87 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF182-201 - 620 6.4e-10 39.0 80.3 6 12 0.0011 0.68 10.1 4.8 7 36 384 420 383 423 0.89 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF182-201 - 620 6.4e-10 39.0 80.3 7 12 0.0041 2.6 8.2 5.2 6 35 411 447 410 452 0.88 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF182-201 - 620 6.4e-10 39.0 80.3 8 12 0.42 2.7e+02 1.8 8.4 6 35 439 475 438 480 0.85 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF182-201 - 620 6.4e-10 39.0 80.3 9 12 0.0015 0.94 9.7 7.4 6 37 467 505 465 507 0.86 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF182-201 - 620 6.4e-10 39.0 80.3 10 12 1.2e-05 0.0078 16.3 1.4 6 32 495 528 494 535 0.90 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF182-201 - 620 6.4e-10 39.0 80.3 11 12 0.00024 0.16 12.2 5.3 6 36 551 588 550 592 0.88 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF182-201 - 620 6.4e-10 39.0 80.3 12 12 0.0048 3 8.0 0.6 6 16 579 589 576 600 0.85 Zinc ribbon domain CpXC PF14353.6 118 ZNF182-201 - 620 1.7e-07 31.3 49.2 1 12 0.059 38 4.4 0.0 26 60 204 237 197 239 0.80 CpXC protein CpXC PF14353.6 118 ZNF182-201 - 620 1.7e-07 31.3 49.2 2 12 0.0074 4.8 7.3 0.6 37 60 270 293 243 295 0.71 CpXC protein CpXC PF14353.6 118 ZNF182-201 - 620 1.7e-07 31.3 49.2 3 12 0.015 9.8 6.3 0.1 38 60 299 321 297 323 0.90 CpXC protein CpXC PF14353.6 118 ZNF182-201 - 620 1.7e-07 31.3 49.2 4 12 0.045 28 4.8 0.1 37 60 326 349 322 351 0.88 CpXC protein CpXC PF14353.6 118 ZNF182-201 - 620 1.7e-07 31.3 49.2 5 12 0.22 1.4e+02 2.5 0.1 39 60 356 377 353 379 0.87 CpXC protein CpXC PF14353.6 118 ZNF182-201 - 620 1.7e-07 31.3 49.2 6 12 0.084 54 3.9 0.1 39 60 384 405 381 407 0.86 CpXC protein CpXC PF14353.6 118 ZNF182-201 - 620 1.7e-07 31.3 49.2 7 12 0.14 88 3.2 0.1 38 60 411 433 409 435 0.89 CpXC protein CpXC PF14353.6 118 ZNF182-201 - 620 1.7e-07 31.3 49.2 8 12 0.45 2.9e+02 1.5 0.1 38 59 439 460 437 463 0.77 CpXC protein CpXC PF14353.6 118 ZNF182-201 - 620 1.7e-07 31.3 49.2 9 12 0.014 8.8 6.4 1.2 3 58 469 515 467 519 0.75 CpXC protein CpXC PF14353.6 118 ZNF182-201 - 620 1.7e-07 31.3 49.2 10 12 0.16 1e+02 3.0 0.1 38 60 523 545 519 547 0.88 CpXC protein CpXC PF14353.6 118 ZNF182-201 - 620 1.7e-07 31.3 49.2 11 12 0.13 85 3.2 0.2 38 60 551 573 549 575 0.89 CpXC protein CpXC PF14353.6 118 ZNF182-201 - 620 1.7e-07 31.3 49.2 12 12 0.026 17 5.5 0.1 38 60 579 601 577 603 0.90 CpXC protein C1_4 PF07975.12 55 ZNF182-201 - 620 2.9e-07 30.6 57.4 1 12 0.24 1.5e+02 2.7 0.4 25 48 214 237 203 247 0.71 TFIIH C1-like domain C1_4 PF07975.12 55 ZNF182-201 - 620 2.9e-07 30.6 57.4 2 12 0.018 12 6.3 1.3 1 48 216 265 216 268 0.79 TFIIH C1-like domain C1_4 PF07975.12 55 ZNF182-201 - 620 2.9e-07 30.6 57.4 3 12 0.037 24 5.3 0.8 2 48 245 293 244 296 0.74 TFIIH C1-like domain C1_4 PF07975.12 55 ZNF182-201 - 620 2.9e-07 30.6 57.4 4 12 0.0078 5 7.4 1.3 2 49 273 322 272 324 0.74 TFIIH C1-like domain C1_4 PF07975.12 55 ZNF182-201 - 620 2.9e-07 30.6 57.4 5 12 5.7e-05 0.037 14.3 3.7 1 49 300 350 300 352 0.87 TFIIH C1-like domain C1_4 PF07975.12 55 ZNF182-201 - 620 2.9e-07 30.6 57.4 6 12 0.091 58 4.0 0.3 26 48 355 377 350 381 0.84 TFIIH C1-like domain C1_4 PF07975.12 55 ZNF182-201 - 620 2.9e-07 30.6 57.4 7 12 0.0066 4.2 7.7 1.1 1 48 384 433 384 436 0.81 TFIIH C1-like domain C1_4 PF07975.12 55 ZNF182-201 - 620 2.9e-07 30.6 57.4 8 12 0.054 34 4.8 2.4 2 38 413 451 413 464 0.73 TFIIH C1-like domain C1_4 PF07975.12 55 ZNF182-201 - 620 2.9e-07 30.6 57.4 9 12 0.0088 5.6 7.3 3.5 1 48 440 489 440 492 0.83 TFIIH C1-like domain C1_4 PF07975.12 55 ZNF182-201 - 620 2.9e-07 30.6 57.4 10 12 0.007 4.5 7.6 3.1 1 49 468 518 468 520 0.82 TFIIH C1-like domain C1_4 PF07975.12 55 ZNF182-201 - 620 2.9e-07 30.6 57.4 11 12 0.0067 4.3 7.6 0.9 2 49 497 546 496 548 0.83 TFIIH C1-like domain C1_4 PF07975.12 55 ZNF182-201 - 620 2.9e-07 30.6 57.4 12 12 0.0016 1 9.7 1.3 2 49 553 602 552 604 0.84 TFIIH C1-like domain # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF182-201.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF182-201.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF182-201.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF182-201.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF182-201.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:01:00 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZNF182-202 - 639 9.4e-106 342.0 103.2 1 15 1.4e-08 9.1e-06 25.9 0.2 1 25 220 244 220 245 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF182-202 - 639 9.4e-106 342.0 103.2 2 15 1.2e-07 7.8e-05 22.9 0.4 3 25 250 272 247 273 0.87 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF182-202 - 639 9.4e-106 342.0 103.2 3 15 4.6e-11 3e-08 33.7 0.2 5 24 280 299 277 300 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF182-202 - 639 9.4e-106 342.0 103.2 4 15 2.7e-10 1.8e-07 31.3 1.3 5 25 308 328 307 329 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF182-202 - 639 9.4e-106 342.0 103.2 5 15 1.1e-08 7.3e-06 26.2 0.3 1 24 332 355 332 357 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF182-202 - 639 9.4e-106 342.0 103.2 6 15 1.3e-07 8.6e-05 22.8 3.0 5 25 364 384 360 385 0.90 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF182-202 - 639 9.4e-106 342.0 103.2 7 15 7.3e-10 4.8e-07 29.9 1.5 5 25 392 412 389 413 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF182-202 - 639 9.4e-106 342.0 103.2 8 15 1.2e-11 7.8e-09 35.6 0.3 5 25 420 440 417 441 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF182-202 - 639 9.4e-106 342.0 103.2 9 15 2.1e-09 1.4e-06 28.5 0.3 5 25 448 468 444 469 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF182-202 - 639 9.4e-106 342.0 103.2 10 15 1e-10 6.9e-08 32.6 0.3 2 25 473 496 472 497 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF182-202 - 639 9.4e-106 342.0 103.2 11 15 6.4e-09 4.3e-06 26.9 1.0 5 24 504 523 500 524 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF182-202 - 639 9.4e-106 342.0 103.2 12 15 5e-10 3.3e-07 30.4 0.1 5 25 532 552 528 553 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF182-202 - 639 9.4e-106 342.0 103.2 13 15 9.8e-10 6.5e-07 29.5 0.3 5 24 560 579 557 580 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF182-202 - 639 9.4e-106 342.0 103.2 14 15 1.3e-10 8.5e-08 32.3 2.1 4 25 587 608 585 609 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF182-202 - 639 9.4e-106 342.0 103.2 15 15 1.1 7.5e+02 0.9 1.3 1 14 612 625 612 635 0.87 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZNF182-202 - 639 3.2e-90 291.8 97.2 1 15 0.024 16 6.2 0.0 5 21 210 226 209 227 0.93 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF182-202 - 639 3.2e-90 291.8 97.2 2 15 6.6e-07 0.00044 20.6 2.9 1 23 234 256 234 256 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF182-202 - 639 3.2e-90 291.8 97.2 3 15 2.9e-08 1.9e-05 24.8 0.3 3 23 264 284 262 284 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF182-202 - 639 3.2e-90 291.8 97.2 4 15 4.7e-07 0.00031 21.0 0.2 1 23 290 312 290 312 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF182-202 - 639 3.2e-90 291.8 97.2 5 15 5.2e-10 3.4e-07 30.3 0.3 1 23 318 340 318 340 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF182-202 - 639 3.2e-90 291.8 97.2 6 15 4.2e-06 0.0028 18.0 0.7 1 23 346 368 346 368 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF182-202 - 639 3.2e-90 291.8 97.2 7 15 5.6e-08 3.7e-05 23.9 2.5 1 23 374 396 374 396 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF182-202 - 639 3.2e-90 291.8 97.2 8 15 1.9e-08 1.3e-05 25.4 2.2 1 23 402 424 402 424 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF182-202 - 639 3.2e-90 291.8 97.2 9 15 1.5e-09 9.9e-07 28.9 0.5 1 23 430 452 430 452 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF182-202 - 639 3.2e-90 291.8 97.2 10 15 1.2e-07 8.1e-05 22.9 0.6 1 23 458 480 458 480 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF182-202 - 639 3.2e-90 291.8 97.2 11 15 1.7e-08 1.1e-05 25.6 0.5 1 23 486 508 486 508 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF182-202 - 639 3.2e-90 291.8 97.2 12 15 2.9e-08 2e-05 24.8 0.4 1 23 514 536 514 536 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF182-202 - 639 3.2e-90 291.8 97.2 13 15 7.1e-09 4.7e-06 26.7 0.2 1 23 542 564 542 564 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF182-202 - 639 3.2e-90 291.8 97.2 14 15 7.2e-08 4.8e-05 23.6 0.9 1 23 570 592 570 592 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF182-202 - 639 3.2e-90 291.8 97.2 15 15 1.5e-10 1e-07 32.0 0.7 1 23 598 620 598 620 0.99 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZNF182-202 - 639 7.8e-50 163.2 94.5 1 15 0.82 5.4e+02 1.9 0.0 5 21 210 226 209 228 0.89 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF182-202 - 639 7.8e-50 163.2 94.5 2 15 6.2e-06 0.0041 17.8 2.8 1 23 234 256 234 257 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF182-202 - 639 7.8e-50 163.2 94.5 3 15 6.6e-06 0.0044 17.8 0.3 1 23 262 284 262 285 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF182-202 - 639 7.8e-50 163.2 94.5 4 15 2.6e-05 0.017 15.9 0.3 1 23 290 312 290 313 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF182-202 - 639 7.8e-50 163.2 94.5 5 15 6.3e-06 0.0042 17.8 0.3 1 23 318 340 318 341 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF182-202 - 639 7.8e-50 163.2 94.5 6 15 0.00065 0.43 11.5 0.6 1 23 346 368 346 369 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF182-202 - 639 7.8e-50 163.2 94.5 7 15 1.9e-05 0.013 16.3 1.6 1 23 374 396 374 397 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF182-202 - 639 7.8e-50 163.2 94.5 8 15 3.9e-06 0.0026 18.5 1.6 1 23 402 424 402 425 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF182-202 - 639 7.8e-50 163.2 94.5 9 15 1.1e-06 0.00074 20.1 0.4 1 23 430 452 430 453 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF182-202 - 639 7.8e-50 163.2 94.5 10 15 0.001 0.67 11.0 0.7 1 23 458 480 458 481 0.90 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF182-202 - 639 7.8e-50 163.2 94.5 11 15 8.5e-05 0.056 14.3 0.5 1 23 486 508 486 509 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF182-202 - 639 7.8e-50 163.2 94.5 12 15 5.5e-05 0.036 14.9 0.3 1 23 514 536 514 537 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF182-202 - 639 7.8e-50 163.2 94.5 13 15 0.00036 0.24 12.3 0.4 1 23 542 564 542 565 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF182-202 - 639 7.8e-50 163.2 94.5 14 15 2.3e-05 0.015 16.0 0.7 1 23 570 592 570 593 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF182-202 - 639 7.8e-50 163.2 94.5 15 15 2.3e-06 0.0015 19.2 0.4 1 23 598 620 598 621 0.96 C2H2-type zinc finger KRAB PF01352.27 42 ZNF182-202 - 639 2.1e-25 88.1 0.8 1 1 5.8e-28 3.8e-25 87.2 0.8 1 42 26 67 26 67 0.98 KRAB box zf-C2H2_6 PF13912.6 27 ZNF182-202 - 639 2.9e-21 75.0 93.4 1 14 0.032 21 5.3 1.2 2 18 234 250 234 258 0.75 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF182-202 - 639 2.9e-21 75.0 93.4 2 14 0.001 0.68 10.0 0.4 2 24 262 284 262 287 0.89 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF182-202 - 639 2.9e-21 75.0 93.4 3 14 0.0029 1.9 8.6 0.4 2 12 290 300 290 300 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF182-202 - 639 2.9e-21 75.0 93.4 4 14 8.1e-05 0.054 13.5 0.7 2 24 318 340 318 343 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF182-202 - 639 2.9e-21 75.0 93.4 5 14 0.0066 4.4 7.4 0.4 2 11 346 355 345 357 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF182-202 - 639 2.9e-21 75.0 93.4 6 14 0.00028 0.19 11.8 0.8 2 12 374 384 374 397 0.86 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF182-202 - 639 2.9e-21 75.0 93.4 7 14 0.00018 0.12 12.4 1.1 2 12 402 412 402 426 0.78 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF182-202 - 639 2.9e-21 75.0 93.4 8 14 1.8e-06 0.0012 18.8 0.6 2 25 430 453 430 455 0.95 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF182-202 - 639 2.9e-21 75.0 93.4 9 14 0.017 11 6.1 1.5 2 12 458 468 458 471 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF182-202 - 639 2.9e-21 75.0 93.4 10 14 0.0041 2.7 8.1 0.6 2 12 486 496 486 511 0.79 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF182-202 - 639 2.9e-21 75.0 93.4 11 14 0.0033 2.2 8.4 0.7 2 12 514 524 514 525 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF182-202 - 639 2.9e-21 75.0 93.4 12 14 0.019 13 6.0 0.2 2 24 542 564 542 567 0.77 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF182-202 - 639 2.9e-21 75.0 93.4 13 14 0.0084 5.6 7.1 0.3 2 12 570 580 570 580 0.91 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF182-202 - 639 2.9e-21 75.0 93.4 14 14 0.00019 0.13 12.3 1.0 2 24 598 620 598 623 0.93 C2H2-type zinc finger zf-C2H2_jaz PF12171.8 27 ZNF182-202 - 639 5.4e-16 58.4 69.6 1 13 2.5e-05 0.016 15.5 0.5 2 24 234 256 233 256 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF182-202 - 639 5.4e-16 58.4 69.6 2 13 0.017 11 6.4 0.1 4 24 264 284 261 284 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF182-202 - 639 5.4e-16 58.4 69.6 3 13 0.0062 4.1 7.8 0.0 2 24 290 312 289 312 0.91 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF182-202 - 639 5.4e-16 58.4 69.6 4 13 0.057 38 4.7 0.6 2 24 318 340 317 340 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF182-202 - 639 5.4e-16 58.4 69.6 5 13 0.00016 0.11 12.9 3.5 2 27 374 403 373 403 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF182-202 - 639 5.4e-16 58.4 69.6 6 13 0.0003 0.2 12.0 0.7 2 24 402 424 401 424 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF182-202 - 639 5.4e-16 58.4 69.6 7 13 0.0023 1.5 9.2 0.1 2 24 430 452 429 453 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF182-202 - 639 5.4e-16 58.4 69.6 8 13 0.012 8.2 6.9 0.5 2 24 458 480 457 480 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF182-202 - 639 5.4e-16 58.4 69.6 9 13 0.12 78 3.7 1.0 2 23 486 507 485 508 0.84 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF182-202 - 639 5.4e-16 58.4 69.6 10 13 0.4 2.6e+02 2.0 0.2 2 21 514 533 513 534 0.81 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF182-202 - 639 5.4e-16 58.4 69.6 11 13 0.052 34 4.9 0.1 2 24 542 564 541 564 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF182-202 - 639 5.4e-16 58.4 69.6 12 13 0.0015 1 9.7 0.1 2 24 570 592 569 592 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF182-202 - 639 5.4e-16 58.4 69.6 13 13 0.015 10 6.6 0.6 2 24 598 620 597 626 0.89 Zinc-finger double-stranded RNA-binding Zn-ribbon_8 PF09723.10 40 ZNF182-202 - 639 7.5e-10 38.8 80.1 1 12 0.015 9.7 6.4 3.4 6 35 234 270 233 274 0.79 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF182-202 - 639 7.5e-10 38.8 80.1 2 12 0.00013 0.084 13.0 1.9 6 37 262 300 260 302 0.77 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF182-202 - 639 7.5e-10 38.8 80.1 3 12 2.2e-05 0.015 15.4 4.1 6 34 318 353 317 359 0.90 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF182-202 - 639 7.5e-10 38.8 80.1 4 12 0.003 2 8.6 4.8 6 34 346 381 344 384 0.83 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF182-202 - 639 7.5e-10 38.8 80.1 5 12 0.0055 3.7 7.8 4.8 7 34 375 409 374 414 0.87 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF182-202 - 639 7.5e-10 38.8 80.1 6 12 0.001 0.68 10.1 4.8 7 36 403 439 402 443 0.88 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF182-202 - 639 7.5e-10 38.8 80.1 7 12 0.0041 2.7 8.2 5.1 6 35 430 466 429 471 0.88 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF182-202 - 639 7.5e-10 38.8 80.1 8 12 0.39 2.6e+02 1.9 8.3 6 35 458 494 457 499 0.85 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF182-202 - 639 7.5e-10 38.8 80.1 9 12 0.0014 0.94 9.6 7.3 6 37 486 524 485 526 0.86 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF182-202 - 639 7.5e-10 38.8 80.1 10 12 1.2e-05 0.0081 16.3 1.4 6 32 514 547 513 554 0.90 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF182-202 - 639 7.5e-10 38.8 80.1 11 12 0.00024 0.16 12.1 5.3 6 36 570 607 569 611 0.88 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF182-202 - 639 7.5e-10 38.8 80.1 12 12 0.0047 3.2 8.0 0.6 6 16 598 608 595 619 0.85 Zinc ribbon domain CpXC PF14353.6 118 ZNF182-202 - 639 2.6e-07 30.7 49.2 1 11 0.059 39 4.3 0.0 26 60 223 256 216 258 0.80 CpXC protein CpXC PF14353.6 118 ZNF182-202 - 639 2.6e-07 30.7 49.2 2 11 0.0074 4.9 7.2 0.6 37 60 289 312 262 314 0.71 CpXC protein CpXC PF14353.6 118 ZNF182-202 - 639 2.6e-07 30.7 49.2 3 11 0.015 10 6.2 0.1 38 60 318 340 316 342 0.90 CpXC protein CpXC PF14353.6 118 ZNF182-202 - 639 2.6e-07 30.7 49.2 4 11 0.22 1.5e+02 2.5 0.1 39 60 375 396 372 398 0.87 CpXC protein CpXC PF14353.6 118 ZNF182-202 - 639 2.6e-07 30.7 49.2 5 11 0.084 56 3.8 0.1 39 60 403 424 400 426 0.86 CpXC protein CpXC PF14353.6 118 ZNF182-202 - 639 2.6e-07 30.7 49.2 6 11 0.14 91 3.1 0.1 38 60 430 452 428 454 0.89 CpXC protein CpXC PF14353.6 118 ZNF182-202 - 639 2.6e-07 30.7 49.2 7 11 0.45 3e+02 1.5 0.1 38 59 458 479 456 482 0.77 CpXC protein CpXC PF14353.6 118 ZNF182-202 - 639 2.6e-07 30.7 49.2 8 11 0.014 9.2 6.3 1.2 3 58 488 534 486 538 0.75 CpXC protein CpXC PF14353.6 118 ZNF182-202 - 639 2.6e-07 30.7 49.2 9 11 0.16 1.1e+02 2.9 0.1 38 60 542 564 538 566 0.88 CpXC protein CpXC PF14353.6 118 ZNF182-202 - 639 2.6e-07 30.7 49.2 10 11 0.13 88 3.2 0.2 38 60 570 592 568 594 0.89 CpXC protein CpXC PF14353.6 118 ZNF182-202 - 639 2.6e-07 30.7 49.2 11 11 0.026 17 5.4 0.1 38 60 598 620 596 622 0.90 CpXC protein C1_4 PF07975.12 55 ZNF182-202 - 639 3.3e-07 30.5 57.1 1 12 0.29 2e+02 2.3 0.4 25 44 233 252 222 264 0.72 TFIIH C1-like domain C1_4 PF07975.12 55 ZNF182-202 - 639 3.3e-07 30.5 57.1 2 12 0.019 12 6.2 1.3 1 48 235 284 235 287 0.79 TFIIH C1-like domain C1_4 PF07975.12 55 ZNF182-202 - 639 3.3e-07 30.5 57.1 3 12 0.038 25 5.2 0.9 2 48 264 312 263 315 0.74 TFIIH C1-like domain C1_4 PF07975.12 55 ZNF182-202 - 639 3.3e-07 30.5 57.1 4 12 0.0076 5.1 7.4 1.3 2 49 292 341 291 343 0.74 TFIIH C1-like domain C1_4 PF07975.12 55 ZNF182-202 - 639 3.3e-07 30.5 57.1 5 12 5.2e-05 0.035 14.4 3.6 1 49 319 369 319 371 0.87 TFIIH C1-like domain C1_4 PF07975.12 55 ZNF182-202 - 639 3.3e-07 30.5 57.1 6 12 0.092 61 4.0 0.3 26 48 374 396 369 400 0.84 TFIIH C1-like domain C1_4 PF07975.12 55 ZNF182-202 - 639 3.3e-07 30.5 57.1 7 12 0.0069 4.6 7.6 1.2 1 48 403 452 403 455 0.81 TFIIH C1-like domain C1_4 PF07975.12 55 ZNF182-202 - 639 3.3e-07 30.5 57.1 8 12 0.029 19 5.6 2.4 2 37 432 469 431 482 0.75 TFIIH C1-like domain C1_4 PF07975.12 55 ZNF182-202 - 639 3.3e-07 30.5 57.1 9 12 0.0091 6 7.2 3.6 1 48 459 508 459 512 0.83 TFIIH C1-like domain C1_4 PF07975.12 55 ZNF182-202 - 639 3.3e-07 30.5 57.1 10 12 0.0059 3.9 7.8 2.8 1 49 487 537 487 539 0.82 TFIIH C1-like domain C1_4 PF07975.12 55 ZNF182-202 - 639 3.3e-07 30.5 57.1 11 12 0.0058 3.9 7.8 0.7 2 49 516 565 515 567 0.83 TFIIH C1-like domain C1_4 PF07975.12 55 ZNF182-202 - 639 3.3e-07 30.5 57.1 12 12 0.0016 1.1 9.6 1.4 2 49 572 621 570 623 0.84 TFIIH C1-like domain # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF182-202.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF182-202.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF182-202.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF182-202.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF182-202.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:01:00 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZNF184-201 - 751 1.7e-149 480.2 146.5 1 20 0.085 1.3e+02 3.3 2.7 12 25 219 232 212 233 0.79 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF184-201 - 751 1.7e-149 480.2 146.5 2 20 4.2e-12 6.3e-09 35.9 0.8 1 25 236 260 236 261 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF184-201 - 751 1.7e-149 480.2 146.5 3 20 2.4e-10 3.6e-07 30.3 0.1 1 24 264 287 264 288 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF184-201 - 751 1.7e-149 480.2 146.5 4 20 1.4e-12 2.1e-09 37.4 0.3 1 25 292 316 292 317 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF184-201 - 751 1.7e-149 480.2 146.5 5 20 4.3e-12 6.4e-09 35.8 0.6 1 25 320 344 320 345 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF184-201 - 751 1.7e-149 480.2 146.5 6 20 4.4e-11 6.6e-08 32.6 3.3 1 26 348 373 348 373 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF184-201 - 751 1.7e-149 480.2 146.5 7 20 6.3e-10 9.4e-07 29.0 1.8 1 25 376 400 376 400 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF184-201 - 751 1.7e-149 480.2 146.5 8 20 1.8e-09 2.7e-06 27.5 1.1 4 25 407 428 405 429 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF184-201 - 751 1.7e-149 480.2 146.5 9 20 7.5e-11 1.1e-07 31.9 0.7 1 25 432 456 432 457 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF184-201 - 751 1.7e-149 480.2 146.5 10 20 1.5e-11 2.3e-08 34.1 0.5 2 25 461 484 460 485 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF184-201 - 751 1.7e-149 480.2 146.5 11 20 3.6e-11 5.5e-08 32.9 0.9 1 25 488 512 488 513 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF184-201 - 751 1.7e-149 480.2 146.5 12 20 7.5e-11 1.1e-07 31.9 0.6 1 24 516 539 516 541 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF184-201 - 751 1.7e-149 480.2 146.5 13 20 1.5e-11 2.2e-08 34.1 1.9 2 25 545 568 544 569 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF184-201 - 751 1.7e-149 480.2 146.5 14 20 8.8e-10 1.3e-06 28.5 0.2 2 25 573 596 572 597 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF184-201 - 751 1.7e-149 480.2 146.5 15 20 5.4e-10 8.1e-07 29.2 2.6 1 26 600 625 600 625 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF184-201 - 751 1.7e-149 480.2 146.5 16 20 4.8e-10 7.2e-07 29.4 1.6 2 25 629 652 628 653 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF184-201 - 751 1.7e-149 480.2 146.5 17 20 4.9e-12 7.4e-09 35.7 1.7 1 25 656 680 656 681 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF184-201 - 751 1.7e-149 480.2 146.5 18 20 6.8e-10 1e-06 28.9 2.6 1 25 684 708 684 709 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF184-201 - 751 1.7e-149 480.2 146.5 19 20 1.3e-07 0.00019 21.7 0.2 2 25 713 736 712 737 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF184-201 - 751 1.7e-149 480.2 146.5 20 20 0.058 86 3.8 0.1 1 11 740 750 740 751 0.92 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZNF184-201 - 751 3.4e-110 354.8 159.7 1 19 6.4e-08 9.5e-05 22.6 4.4 2 23 223 244 222 244 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF184-201 - 751 3.4e-110 354.8 159.7 2 19 2.2e-09 3.4e-06 27.2 0.4 1 23 250 272 250 272 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF184-201 - 751 3.4e-110 354.8 159.7 3 19 1.1e-05 0.017 15.6 0.1 1 23 278 300 278 300 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF184-201 - 751 3.4e-110 354.8 159.7 4 19 4.2e-09 6.2e-06 26.4 1.5 1 23 306 328 306 328 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF184-201 - 751 3.4e-110 354.8 159.7 5 19 3.6e-08 5.3e-05 23.4 1.5 1 23 334 356 334 356 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF184-201 - 751 3.4e-110 354.8 159.7 6 19 1.7e-08 2.5e-05 24.5 3.8 1 23 362 384 362 384 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF184-201 - 751 3.4e-110 354.8 159.7 7 19 1.8e-07 0.00028 21.2 1.0 1 23 390 412 390 412 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF184-201 - 751 3.4e-110 354.8 159.7 8 19 2e-09 2.9e-06 27.4 1.9 1 23 418 440 418 440 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF184-201 - 751 3.4e-110 354.8 159.7 9 19 1.7e-08 2.5e-05 24.4 0.1 1 23 446 468 446 468 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF184-201 - 751 3.4e-110 354.8 159.7 10 19 3.1e-08 4.6e-05 23.7 3.3 1 23 474 496 474 496 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF184-201 - 751 3.4e-110 354.8 159.7 11 19 6.3e-09 9.3e-06 25.8 0.7 1 23 502 524 502 524 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF184-201 - 751 3.4e-110 354.8 159.7 12 19 6.8e-09 1e-05 25.7 0.2 1 23 530 552 530 552 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF184-201 - 751 3.4e-110 354.8 159.7 13 19 1.1e-07 0.00017 21.9 2.0 1 23 558 580 558 580 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF184-201 - 751 3.4e-110 354.8 159.7 14 19 5.2e-08 7.8e-05 22.9 1.6 1 23 586 608 586 608 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF184-201 - 751 3.4e-110 354.8 159.7 15 19 1e-07 0.00016 22.0 2.8 1 23 614 636 614 636 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF184-201 - 751 3.4e-110 354.8 159.7 16 19 8.2e-09 1.2e-05 25.4 4.0 1 23 642 664 642 664 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF184-201 - 751 3.4e-110 354.8 159.7 17 19 8e-09 1.2e-05 25.5 2.9 1 23 670 692 670 692 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF184-201 - 751 3.4e-110 354.8 159.7 18 19 2.2e-07 0.00033 20.9 1.7 1 23 698 720 698 720 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF184-201 - 751 3.4e-110 354.8 159.7 19 19 6.5e-09 9.7e-06 25.8 1.1 3 23 728 748 726 748 0.98 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZNF184-201 - 751 4.4e-57 185.8 149.2 1 19 1.4e-05 0.021 15.6 4.1 2 23 223 244 222 245 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF184-201 - 751 4.4e-57 185.8 149.2 2 19 1.2e-05 0.017 15.9 0.4 1 23 250 272 250 273 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF184-201 - 751 4.4e-57 185.8 149.2 3 19 0.00012 0.17 12.8 0.1 1 23 278 300 278 301 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF184-201 - 751 4.4e-57 185.8 149.2 4 19 9.3e-06 0.014 16.2 1.2 1 23 306 328 306 329 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF184-201 - 751 4.4e-57 185.8 149.2 5 19 0.00014 0.21 12.5 1.1 1 23 334 356 334 357 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF184-201 - 751 4.4e-57 185.8 149.2 6 19 1.1e-05 0.016 16.0 2.4 1 23 362 384 362 385 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF184-201 - 751 4.4e-57 185.8 149.2 7 19 4.6e-05 0.068 14.0 0.6 1 20 390 410 390 413 0.82 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF184-201 - 751 4.4e-57 185.8 149.2 8 19 6.6e-06 0.0098 16.7 1.5 1 23 418 440 418 441 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF184-201 - 751 4.4e-57 185.8 149.2 9 19 2.7e-05 0.04 14.8 0.3 3 23 448 468 446 469 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF184-201 - 751 4.4e-57 185.8 149.2 10 19 1.5e-05 0.023 15.5 2.7 1 23 474 496 474 497 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF184-201 - 751 4.4e-57 185.8 149.2 11 19 1.9e-06 0.0028 18.4 0.7 1 23 502 524 502 525 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF184-201 - 751 4.4e-57 185.8 149.2 12 19 2.2e-05 0.033 15.0 0.3 1 23 530 552 530 553 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF184-201 - 751 4.4e-57 185.8 149.2 13 19 7.2e-06 0.011 16.5 1.5 1 23 558 580 558 581 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF184-201 - 751 4.4e-57 185.8 149.2 14 19 0.00022 0.33 11.9 0.9 1 23 586 608 586 609 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF184-201 - 751 4.4e-57 185.8 149.2 15 19 0.00017 0.25 12.3 3.1 1 23 614 636 614 637 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF184-201 - 751 4.4e-57 185.8 149.2 16 19 4e-05 0.06 14.2 3.0 1 23 642 664 642 665 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF184-201 - 751 4.4e-57 185.8 149.2 17 19 5.5e-05 0.082 13.8 1.9 1 23 670 692 670 693 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF184-201 - 751 4.4e-57 185.8 149.2 18 19 4.7e-05 0.071 14.0 1.0 1 23 698 720 698 721 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF184-201 - 751 4.4e-57 185.8 149.2 19 19 2.3e-05 0.035 15.0 0.5 2 23 727 748 726 749 0.92 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF184-201 - 751 4.3e-41 138.2 148.7 1 19 8.7e-06 0.013 15.5 2.2 3 24 223 244 223 247 0.95 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF184-201 - 751 4.3e-41 138.2 148.7 2 19 0.00015 0.23 11.5 0.4 2 22 250 270 250 273 0.90 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF184-201 - 751 4.3e-41 138.2 148.7 3 19 0.00076 1.1 9.3 0.2 2 22 278 298 278 302 0.82 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF184-201 - 751 4.3e-41 138.2 148.7 4 19 0.00039 0.59 10.2 0.2 2 12 306 316 306 327 0.92 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF184-201 - 751 4.3e-41 138.2 148.7 5 19 0.0054 8 6.6 0.5 2 12 334 344 334 345 0.92 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF184-201 - 751 4.3e-41 138.2 148.7 6 19 6.3e-05 0.094 12.7 1.7 2 24 362 384 362 387 0.88 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF184-201 - 751 4.3e-41 138.2 148.7 7 19 0.00092 1.4 9.0 0.6 2 12 390 400 389 400 0.91 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF184-201 - 751 4.3e-41 138.2 148.7 8 19 3.2e-05 0.048 13.7 3.4 2 24 418 440 418 443 0.95 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF184-201 - 751 4.3e-41 138.2 148.7 9 19 4.5e-05 0.067 13.2 0.6 2 24 446 468 446 471 0.91 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF184-201 - 751 4.3e-41 138.2 148.7 10 19 7.8e-06 0.012 15.6 3.4 2 24 474 496 474 499 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF184-201 - 751 4.3e-41 138.2 148.7 11 19 1.1e-08 1.6e-05 24.7 2.1 2 26 502 526 502 527 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF184-201 - 751 4.3e-41 138.2 148.7 12 19 0.00017 0.26 11.4 0.3 1 20 529 548 529 553 0.77 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF184-201 - 751 4.3e-41 138.2 148.7 13 19 1.2e-07 0.00018 21.4 2.4 2 24 558 580 558 583 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF184-201 - 751 4.3e-41 138.2 148.7 14 19 0.0031 4.6 7.4 0.8 2 21 586 605 586 609 0.76 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF184-201 - 751 4.3e-41 138.2 148.7 15 19 0.0015 2.2 8.4 5.1 2 25 614 637 614 639 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF184-201 - 751 4.3e-41 138.2 148.7 16 19 0.024 37 4.5 1.3 2 12 642 652 642 664 0.86 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF184-201 - 751 4.3e-41 138.2 148.7 17 19 0.0001 0.16 12.0 2.1 2 24 670 692 670 695 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF184-201 - 751 4.3e-41 138.2 148.7 18 19 0.0019 2.9 8.0 0.6 2 20 698 716 698 723 0.77 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF184-201 - 751 4.3e-41 138.2 148.7 19 19 3.4e-05 0.051 13.6 0.3 2 24 726 748 726 751 0.90 C2H2-type zinc finger KRAB PF01352.27 42 ZNF184-201 - 751 1.5e-22 79.0 0.1 1 1 2e-25 3e-22 78.0 0.1 2 42 28 68 27 68 0.98 KRAB box Zn-ribbon_8 PF09723.10 40 ZNF184-201 - 751 7.4e-16 58.0 111.5 1 17 0.0051 7.6 6.8 5.7 7 38 223 261 221 263 0.89 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF184-201 - 751 7.4e-16 58.0 111.5 2 17 0.00088 1.3 9.2 4.7 6 34 250 285 249 290 0.92 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF184-201 - 751 7.4e-16 58.0 111.5 3 17 0.00013 0.19 11.8 4.4 6 36 278 315 276 319 0.89 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF184-201 - 751 7.4e-16 58.0 111.5 4 17 6.1e-06 0.0091 16.1 3.2 6 36 306 343 305 347 0.89 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF184-201 - 751 7.4e-16 58.0 111.5 5 17 0.00058 0.86 9.8 5.0 6 38 334 373 333 374 0.90 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF184-201 - 751 7.4e-16 58.0 111.5 6 17 0.0001 0.15 12.2 5.1 6 34 362 397 361 400 0.93 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF184-201 - 751 7.4e-16 58.0 111.5 7 17 2.7e-05 0.04 14.0 4.7 6 35 390 426 388 430 0.85 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF184-201 - 751 7.4e-16 58.0 111.5 8 17 0.00022 0.32 11.1 5.4 6 34 418 453 417 456 0.91 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF184-201 - 751 7.4e-16 58.0 111.5 9 17 0.036 54 4.0 12.0 6 34 474 509 445 512 0.71 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF184-201 - 751 7.4e-16 58.0 111.5 10 17 0.00031 0.46 10.6 5.5 6 35 502 538 501 542 0.83 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF184-201 - 751 7.4e-16 58.0 111.5 11 17 0.0052 7.8 6.7 0.7 6 16 530 540 528 551 0.80 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF184-201 - 751 7.4e-16 58.0 111.5 12 17 3e-05 0.045 13.9 3.5 6 35 558 594 557 599 0.87 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF184-201 - 751 7.4e-16 58.0 111.5 13 17 0.00056 0.83 9.8 6.3 6 36 586 623 585 626 0.86 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF184-201 - 751 7.4e-16 58.0 111.5 14 17 0.0055 8.2 6.6 8.3 6 34 614 649 613 652 0.86 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF184-201 - 751 7.4e-16 58.0 111.5 15 17 0.00086 1.3 9.2 5.3 6 38 642 681 641 682 0.90 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF184-201 - 751 7.4e-16 58.0 111.5 16 17 0.0047 7 6.9 4.9 6 33 670 704 669 706 0.89 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF184-201 - 751 7.4e-16 58.0 111.5 17 17 0.00019 0.28 11.3 1.0 6 35 698 734 697 739 0.91 Zinc ribbon domain zf-C2H2_11 PF16622.5 29 ZNF184-201 - 751 4.7e-13 48.6 98.5 1 19 0.00032 0.48 10.2 3.3 3 24 220 241 218 243 0.91 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF184-201 - 751 4.7e-13 48.6 98.5 2 19 0.26 3.9e+02 0.9 0.0 5 26 250 271 247 272 0.82 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF184-201 - 751 4.7e-13 48.6 98.5 3 19 0.0066 9.9 6.0 0.1 5 26 278 299 276 300 0.93 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF184-201 - 751 4.7e-13 48.6 98.5 4 19 0.0051 7.6 6.4 0.2 5 26 306 327 303 328 0.91 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF184-201 - 751 4.7e-13 48.6 98.5 5 19 0.15 2.3e+02 1.6 0.1 7 16 336 345 333 355 0.81 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF184-201 - 751 4.7e-13 48.6 98.5 6 19 0.049 73 3.3 0.1 5 26 362 383 359 384 0.90 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF184-201 - 751 4.7e-13 48.6 98.5 7 19 0.0053 7.9 6.3 0.1 3 25 388 410 387 412 0.79 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF184-201 - 751 4.7e-13 48.6 98.5 8 19 0.022 33 4.3 0.2 6 23 419 436 416 438 0.89 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF184-201 - 751 4.7e-13 48.6 98.5 9 19 0.00056 0.83 9.5 0.1 7 26 448 467 445 468 0.94 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF184-201 - 751 4.7e-13 48.6 98.5 10 19 5e-05 0.075 12.8 1.0 5 26 474 495 471 496 0.94 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF184-201 - 751 4.7e-13 48.6 98.5 11 19 0.029 43 4.0 0.1 7 23 504 520 501 522 0.88 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF184-201 - 751 4.7e-13 48.6 98.5 12 19 0.00093 1.4 8.7 0.1 4 26 529 551 526 552 0.90 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF184-201 - 751 4.7e-13 48.6 98.5 13 19 5.8e-05 0.087 12.6 0.6 5 26 558 579 555 580 0.94 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF184-201 - 751 4.7e-13 48.6 98.5 14 19 0.00053 0.79 9.5 0.3 5 26 586 607 584 608 0.93 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF184-201 - 751 4.7e-13 48.6 98.5 15 19 0.29 4.3e+02 0.8 1.2 6 23 615 632 613 634 0.83 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF184-201 - 751 4.7e-13 48.6 98.5 16 19 0.01 16 5.4 0.6 5 26 642 663 638 664 0.91 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF184-201 - 751 4.7e-13 48.6 98.5 17 19 0.36 5.3e+02 0.5 0.1 5 23 670 688 667 689 0.80 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF184-201 - 751 4.7e-13 48.6 98.5 18 19 0.23 3.4e+02 1.1 0.4 6 26 699 719 696 720 0.90 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF184-201 - 751 4.7e-13 48.6 98.5 19 19 0.05 75 3.2 0.9 7 25 728 746 726 748 0.91 zinc-finger C2H2-type zf_UBZ PF18439.1 32 ZNF184-201 - 751 2.7e-11 42.9 101.4 1 19 0.43 6.4e+02 0.1 1.3 4 13 223 232 220 233 0.84 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF184-201 - 751 2.7e-11 42.9 101.4 2 19 0.044 66 3.2 0.2 3 16 250 263 248 269 0.81 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF184-201 - 751 2.7e-11 42.9 101.4 3 19 0.0016 2.4 7.8 0.1 3 21 278 297 276 297 0.88 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF184-201 - 751 2.7e-11 42.9 101.4 4 19 0.0016 2.3 7.9 0.3 3 15 306 318 304 325 0.77 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF184-201 - 751 2.7e-11 42.9 101.4 5 19 0.00038 0.56 9.8 0.3 3 21 334 353 332 353 0.93 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF184-201 - 751 2.7e-11 42.9 101.4 6 19 0.0035 5.2 6.7 0.6 3 21 362 381 360 381 0.85 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF184-201 - 751 2.7e-11 42.9 101.4 7 19 0.0094 14 5.4 0.1 2 12 389 399 388 404 0.87 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF184-201 - 751 2.7e-11 42.9 101.4 8 19 0.001 1.5 8.5 0.6 3 21 418 437 416 437 0.92 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF184-201 - 751 2.7e-11 42.9 101.4 9 19 0.00022 0.33 10.6 0.0 3 20 446 464 444 465 0.91 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF184-201 - 751 2.7e-11 42.9 101.4 10 19 0.032 48 3.7 0.6 3 13 474 484 472 493 0.81 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF184-201 - 751 2.7e-11 42.9 101.4 11 19 0.0065 9.7 5.9 0.1 3 20 502 520 500 521 0.75 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF184-201 - 751 2.7e-11 42.9 101.4 12 19 0.0061 9.1 6.0 0.1 3 20 530 548 528 549 0.79 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF184-201 - 751 2.7e-11 42.9 101.4 13 19 0.01 15 5.3 0.2 3 13 558 568 556 577 0.83 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF184-201 - 751 2.7e-11 42.9 101.4 14 19 0.036 54 3.5 0.2 3 20 586 604 584 605 0.83 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF184-201 - 751 2.7e-11 42.9 101.4 15 19 0.021 32 4.2 1.2 3 20 614 632 612 633 0.75 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF184-201 - 751 2.7e-11 42.9 101.4 16 19 0.0066 9.8 5.9 1.1 3 21 642 661 640 661 0.89 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF184-201 - 751 2.7e-11 42.9 101.4 17 19 0.0014 2.1 8.0 0.6 3 21 670 689 668 689 0.94 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF184-201 - 751 2.7e-11 42.9 101.4 18 19 0.018 27 4.5 0.2 3 17 698 713 696 717 0.79 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF184-201 - 751 2.7e-11 42.9 101.4 19 19 0.21 3.2e+02 1.0 0.1 5 12 728 735 725 745 0.81 Ubiquitin-Binding Zinc Finger XPA_N PF01286.18 32 ZNF184-201 - 751 1.1e-10 41.3 99.6 1 19 0.43 6.5e+02 0.5 4.7 3 11 223 231 222 234 0.90 XPA protein N-terminal XPA_N PF01286.18 32 ZNF184-201 - 751 1.1e-10 41.3 99.6 2 19 0.0092 14 5.8 0.5 3 14 251 262 249 263 0.90 XPA protein N-terminal XPA_N PF01286.18 32 ZNF184-201 - 751 1.1e-10 41.3 99.6 3 19 0.026 38 4.4 0.2 3 11 279 287 277 289 0.87 XPA protein N-terminal XPA_N PF01286.18 32 ZNF184-201 - 751 1.1e-10 41.3 99.6 4 19 0.0023 3.4 7.8 0.2 3 12 307 316 305 318 0.89 XPA protein N-terminal XPA_N PF01286.18 32 ZNF184-201 - 751 1.1e-10 41.3 99.6 5 19 0.011 17 5.6 0.1 3 12 335 344 333 345 0.88 XPA protein N-terminal XPA_N PF01286.18 32 ZNF184-201 - 751 1.1e-10 41.3 99.6 6 19 0.0007 1 9.4 0.2 3 14 363 374 361 380 0.87 XPA protein N-terminal XPA_N PF01286.18 32 ZNF184-201 - 751 1.1e-10 41.3 99.6 7 19 0.018 26 5.0 0.2 3 11 391 399 390 401 0.90 XPA protein N-terminal XPA_N PF01286.18 32 ZNF184-201 - 751 1.1e-10 41.3 99.6 8 19 0.01 15 5.7 0.1 3 12 419 428 417 435 0.89 XPA protein N-terminal XPA_N PF01286.18 32 ZNF184-201 - 751 1.1e-10 41.3 99.6 9 19 0.033 49 4.1 0.1 3 11 447 455 445 458 0.89 XPA protein N-terminal XPA_N PF01286.18 32 ZNF184-201 - 751 1.1e-10 41.3 99.6 10 19 0.022 33 4.6 0.9 3 11 475 483 473 486 0.89 XPA protein N-terminal XPA_N PF01286.18 32 ZNF184-201 - 751 1.1e-10 41.3 99.6 11 19 0.013 20 5.3 0.4 3 15 503 513 501 517 0.82 XPA protein N-terminal XPA_N PF01286.18 32 ZNF184-201 - 751 1.1e-10 41.3 99.6 12 19 0.0029 4.4 7.4 0.2 3 14 531 542 529 545 0.89 XPA protein N-terminal XPA_N PF01286.18 32 ZNF184-201 - 751 1.1e-10 41.3 99.6 13 19 0.02 30 4.8 0.1 3 11 559 567 557 573 0.89 XPA protein N-terminal XPA_N PF01286.18 32 ZNF184-201 - 751 1.1e-10 41.3 99.6 14 19 0.031 47 4.1 0.1 3 12 587 596 585 599 0.88 XPA protein N-terminal XPA_N PF01286.18 32 ZNF184-201 - 751 1.1e-10 41.3 99.6 15 19 0.035 53 4.0 0.8 3 11 615 623 613 628 0.89 XPA protein N-terminal XPA_N PF01286.18 32 ZNF184-201 - 751 1.1e-10 41.3 99.6 16 19 0.011 16 5.6 0.3 3 14 643 654 641 660 0.86 XPA protein N-terminal XPA_N PF01286.18 32 ZNF184-201 - 751 1.1e-10 41.3 99.6 17 19 0.0037 5.6 7.1 0.2 3 14 671 682 669 688 0.86 XPA protein N-terminal XPA_N PF01286.18 32 ZNF184-201 - 751 1.1e-10 41.3 99.6 18 19 0.001 1.5 8.9 0.1 3 17 699 713 697 716 0.88 XPA protein N-terminal XPA_N PF01286.18 32 ZNF184-201 - 751 1.1e-10 41.3 99.6 19 19 0.27 4e+02 1.2 0.1 4 11 728 735 727 737 0.91 XPA protein N-terminal zf-C2H2_jaz PF12171.8 27 ZNF184-201 - 751 5.7e-08 32.8 115.6 1 19 3.7 5.5e+03 -2.2 1.6 4 23 224 243 223 244 0.73 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF184-201 - 751 5.7e-08 32.8 115.6 2 19 0.00022 0.33 11.3 0.5 2 22 250 270 249 270 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF184-201 - 751 5.7e-08 32.8 115.6 3 19 0.067 1e+02 3.4 0.0 2 20 278 296 277 298 0.79 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF184-201 - 751 5.7e-08 32.8 115.6 4 19 0.014 22 5.5 0.2 2 22 306 326 305 326 0.91 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF184-201 - 751 5.7e-08 32.8 115.6 5 19 0.2 2.9e+02 1.9 0.3 2 22 334 354 333 354 0.86 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF184-201 - 751 5.7e-08 32.8 115.6 6 19 1.7e-05 0.025 14.8 0.7 2 22 362 382 361 382 0.95 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF184-201 - 751 5.7e-08 32.8 115.6 7 19 0.0062 9.3 6.7 0.1 2 20 390 408 389 408 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF184-201 - 751 5.7e-08 32.8 115.6 8 19 0.00065 0.97 9.8 1.9 2 24 418 440 417 440 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF184-201 - 751 5.7e-08 32.8 115.6 9 19 0.17 2.6e+02 2.1 0.1 2 21 446 465 445 466 0.75 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF184-201 - 751 5.7e-08 32.8 115.6 10 19 0.68 1e+03 0.2 0.8 2 12 474 484 473 494 0.75 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF184-201 - 751 5.7e-08 32.8 115.6 11 19 0.0072 11 6.5 1.0 2 24 502 524 501 524 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF184-201 - 751 5.7e-08 32.8 115.6 12 19 8.3e-05 0.12 12.7 0.1 2 22 530 550 529 550 0.95 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF184-201 - 751 5.7e-08 32.8 115.6 13 19 0.058 86 3.6 0.2 4 21 560 577 557 578 0.81 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF184-201 - 751 5.7e-08 32.8 115.6 14 19 0.12 1.8e+02 2.6 0.5 2 22 586 606 585 606 0.90 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF184-201 - 751 5.7e-08 32.8 115.6 15 19 0.024 36 4.8 1.7 2 24 614 636 613 636 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF184-201 - 751 5.7e-08 32.8 115.6 16 19 0.33 5e+02 1.2 2.4 7 22 647 662 642 662 0.89 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF184-201 - 751 5.7e-08 32.8 115.6 17 19 0.00011 0.17 12.2 1.6 2 24 670 692 669 692 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF184-201 - 751 5.7e-08 32.8 115.6 18 19 0.004 6 7.3 0.6 2 22 698 718 697 718 0.90 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF184-201 - 751 5.7e-08 32.8 115.6 19 19 0.63 9.4e+02 0.3 0.1 4 22 728 746 725 746 0.87 Zinc-finger double-stranded RNA-binding # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF184-201.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF184-201.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF184-201.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF184-201.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF184-201.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:01:01 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZNF184-202 - 751 1.7e-149 480.2 146.5 1 20 0.085 1.3e+02 3.3 2.7 12 25 219 232 212 233 0.79 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF184-202 - 751 1.7e-149 480.2 146.5 2 20 4.2e-12 6.3e-09 35.9 0.8 1 25 236 260 236 261 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF184-202 - 751 1.7e-149 480.2 146.5 3 20 2.4e-10 3.6e-07 30.3 0.1 1 24 264 287 264 288 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF184-202 - 751 1.7e-149 480.2 146.5 4 20 1.4e-12 2.1e-09 37.4 0.3 1 25 292 316 292 317 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF184-202 - 751 1.7e-149 480.2 146.5 5 20 4.3e-12 6.4e-09 35.8 0.6 1 25 320 344 320 345 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF184-202 - 751 1.7e-149 480.2 146.5 6 20 4.4e-11 6.6e-08 32.6 3.3 1 26 348 373 348 373 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF184-202 - 751 1.7e-149 480.2 146.5 7 20 6.3e-10 9.4e-07 29.0 1.8 1 25 376 400 376 400 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF184-202 - 751 1.7e-149 480.2 146.5 8 20 1.8e-09 2.7e-06 27.5 1.1 4 25 407 428 405 429 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF184-202 - 751 1.7e-149 480.2 146.5 9 20 7.5e-11 1.1e-07 31.9 0.7 1 25 432 456 432 457 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF184-202 - 751 1.7e-149 480.2 146.5 10 20 1.5e-11 2.3e-08 34.1 0.5 2 25 461 484 460 485 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF184-202 - 751 1.7e-149 480.2 146.5 11 20 3.6e-11 5.5e-08 32.9 0.9 1 25 488 512 488 513 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF184-202 - 751 1.7e-149 480.2 146.5 12 20 7.5e-11 1.1e-07 31.9 0.6 1 24 516 539 516 541 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF184-202 - 751 1.7e-149 480.2 146.5 13 20 1.5e-11 2.2e-08 34.1 1.9 2 25 545 568 544 569 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF184-202 - 751 1.7e-149 480.2 146.5 14 20 8.8e-10 1.3e-06 28.5 0.2 2 25 573 596 572 597 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF184-202 - 751 1.7e-149 480.2 146.5 15 20 5.4e-10 8.1e-07 29.2 2.6 1 26 600 625 600 625 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF184-202 - 751 1.7e-149 480.2 146.5 16 20 4.8e-10 7.2e-07 29.4 1.6 2 25 629 652 628 653 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF184-202 - 751 1.7e-149 480.2 146.5 17 20 4.9e-12 7.4e-09 35.7 1.7 1 25 656 680 656 681 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF184-202 - 751 1.7e-149 480.2 146.5 18 20 6.8e-10 1e-06 28.9 2.6 1 25 684 708 684 709 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF184-202 - 751 1.7e-149 480.2 146.5 19 20 1.3e-07 0.00019 21.7 0.2 2 25 713 736 712 737 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF184-202 - 751 1.7e-149 480.2 146.5 20 20 0.058 86 3.8 0.1 1 11 740 750 740 751 0.92 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZNF184-202 - 751 3.4e-110 354.8 159.7 1 19 6.4e-08 9.5e-05 22.6 4.4 2 23 223 244 222 244 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF184-202 - 751 3.4e-110 354.8 159.7 2 19 2.2e-09 3.4e-06 27.2 0.4 1 23 250 272 250 272 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF184-202 - 751 3.4e-110 354.8 159.7 3 19 1.1e-05 0.017 15.6 0.1 1 23 278 300 278 300 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF184-202 - 751 3.4e-110 354.8 159.7 4 19 4.2e-09 6.2e-06 26.4 1.5 1 23 306 328 306 328 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF184-202 - 751 3.4e-110 354.8 159.7 5 19 3.6e-08 5.3e-05 23.4 1.5 1 23 334 356 334 356 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF184-202 - 751 3.4e-110 354.8 159.7 6 19 1.7e-08 2.5e-05 24.5 3.8 1 23 362 384 362 384 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF184-202 - 751 3.4e-110 354.8 159.7 7 19 1.8e-07 0.00028 21.2 1.0 1 23 390 412 390 412 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF184-202 - 751 3.4e-110 354.8 159.7 8 19 2e-09 2.9e-06 27.4 1.9 1 23 418 440 418 440 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF184-202 - 751 3.4e-110 354.8 159.7 9 19 1.7e-08 2.5e-05 24.4 0.1 1 23 446 468 446 468 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF184-202 - 751 3.4e-110 354.8 159.7 10 19 3.1e-08 4.6e-05 23.7 3.3 1 23 474 496 474 496 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF184-202 - 751 3.4e-110 354.8 159.7 11 19 6.3e-09 9.3e-06 25.8 0.7 1 23 502 524 502 524 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF184-202 - 751 3.4e-110 354.8 159.7 12 19 6.8e-09 1e-05 25.7 0.2 1 23 530 552 530 552 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF184-202 - 751 3.4e-110 354.8 159.7 13 19 1.1e-07 0.00017 21.9 2.0 1 23 558 580 558 580 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF184-202 - 751 3.4e-110 354.8 159.7 14 19 5.2e-08 7.8e-05 22.9 1.6 1 23 586 608 586 608 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF184-202 - 751 3.4e-110 354.8 159.7 15 19 1e-07 0.00016 22.0 2.8 1 23 614 636 614 636 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF184-202 - 751 3.4e-110 354.8 159.7 16 19 8.2e-09 1.2e-05 25.4 4.0 1 23 642 664 642 664 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF184-202 - 751 3.4e-110 354.8 159.7 17 19 8e-09 1.2e-05 25.5 2.9 1 23 670 692 670 692 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF184-202 - 751 3.4e-110 354.8 159.7 18 19 2.2e-07 0.00033 20.9 1.7 1 23 698 720 698 720 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF184-202 - 751 3.4e-110 354.8 159.7 19 19 6.5e-09 9.7e-06 25.8 1.1 3 23 728 748 726 748 0.98 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZNF184-202 - 751 4.4e-57 185.8 149.2 1 19 1.4e-05 0.021 15.6 4.1 2 23 223 244 222 245 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF184-202 - 751 4.4e-57 185.8 149.2 2 19 1.2e-05 0.017 15.9 0.4 1 23 250 272 250 273 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF184-202 - 751 4.4e-57 185.8 149.2 3 19 0.00012 0.17 12.8 0.1 1 23 278 300 278 301 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF184-202 - 751 4.4e-57 185.8 149.2 4 19 9.3e-06 0.014 16.2 1.2 1 23 306 328 306 329 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF184-202 - 751 4.4e-57 185.8 149.2 5 19 0.00014 0.21 12.5 1.1 1 23 334 356 334 357 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF184-202 - 751 4.4e-57 185.8 149.2 6 19 1.1e-05 0.016 16.0 2.4 1 23 362 384 362 385 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF184-202 - 751 4.4e-57 185.8 149.2 7 19 4.6e-05 0.068 14.0 0.6 1 20 390 410 390 413 0.82 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF184-202 - 751 4.4e-57 185.8 149.2 8 19 6.6e-06 0.0098 16.7 1.5 1 23 418 440 418 441 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF184-202 - 751 4.4e-57 185.8 149.2 9 19 2.7e-05 0.04 14.8 0.3 3 23 448 468 446 469 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF184-202 - 751 4.4e-57 185.8 149.2 10 19 1.5e-05 0.023 15.5 2.7 1 23 474 496 474 497 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF184-202 - 751 4.4e-57 185.8 149.2 11 19 1.9e-06 0.0028 18.4 0.7 1 23 502 524 502 525 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF184-202 - 751 4.4e-57 185.8 149.2 12 19 2.2e-05 0.033 15.0 0.3 1 23 530 552 530 553 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF184-202 - 751 4.4e-57 185.8 149.2 13 19 7.2e-06 0.011 16.5 1.5 1 23 558 580 558 581 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF184-202 - 751 4.4e-57 185.8 149.2 14 19 0.00022 0.33 11.9 0.9 1 23 586 608 586 609 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF184-202 - 751 4.4e-57 185.8 149.2 15 19 0.00017 0.25 12.3 3.1 1 23 614 636 614 637 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF184-202 - 751 4.4e-57 185.8 149.2 16 19 4e-05 0.06 14.2 3.0 1 23 642 664 642 665 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF184-202 - 751 4.4e-57 185.8 149.2 17 19 5.5e-05 0.082 13.8 1.9 1 23 670 692 670 693 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF184-202 - 751 4.4e-57 185.8 149.2 18 19 4.7e-05 0.071 14.0 1.0 1 23 698 720 698 721 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF184-202 - 751 4.4e-57 185.8 149.2 19 19 2.3e-05 0.035 15.0 0.5 2 23 727 748 726 749 0.92 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF184-202 - 751 4.3e-41 138.2 148.7 1 19 8.7e-06 0.013 15.5 2.2 3 24 223 244 223 247 0.95 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF184-202 - 751 4.3e-41 138.2 148.7 2 19 0.00015 0.23 11.5 0.4 2 22 250 270 250 273 0.90 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF184-202 - 751 4.3e-41 138.2 148.7 3 19 0.00076 1.1 9.3 0.2 2 22 278 298 278 302 0.82 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF184-202 - 751 4.3e-41 138.2 148.7 4 19 0.00039 0.59 10.2 0.2 2 12 306 316 306 327 0.92 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF184-202 - 751 4.3e-41 138.2 148.7 5 19 0.0054 8 6.6 0.5 2 12 334 344 334 345 0.92 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF184-202 - 751 4.3e-41 138.2 148.7 6 19 6.3e-05 0.094 12.7 1.7 2 24 362 384 362 387 0.88 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF184-202 - 751 4.3e-41 138.2 148.7 7 19 0.00092 1.4 9.0 0.6 2 12 390 400 389 400 0.91 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF184-202 - 751 4.3e-41 138.2 148.7 8 19 3.2e-05 0.048 13.7 3.4 2 24 418 440 418 443 0.95 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF184-202 - 751 4.3e-41 138.2 148.7 9 19 4.5e-05 0.067 13.2 0.6 2 24 446 468 446 471 0.91 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF184-202 - 751 4.3e-41 138.2 148.7 10 19 7.8e-06 0.012 15.6 3.4 2 24 474 496 474 499 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF184-202 - 751 4.3e-41 138.2 148.7 11 19 1.1e-08 1.6e-05 24.7 2.1 2 26 502 526 502 527 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF184-202 - 751 4.3e-41 138.2 148.7 12 19 0.00017 0.26 11.4 0.3 1 20 529 548 529 553 0.77 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF184-202 - 751 4.3e-41 138.2 148.7 13 19 1.2e-07 0.00018 21.4 2.4 2 24 558 580 558 583 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF184-202 - 751 4.3e-41 138.2 148.7 14 19 0.0031 4.6 7.4 0.8 2 21 586 605 586 609 0.76 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF184-202 - 751 4.3e-41 138.2 148.7 15 19 0.0015 2.2 8.4 5.1 2 25 614 637 614 639 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF184-202 - 751 4.3e-41 138.2 148.7 16 19 0.024 37 4.5 1.3 2 12 642 652 642 664 0.86 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF184-202 - 751 4.3e-41 138.2 148.7 17 19 0.0001 0.16 12.0 2.1 2 24 670 692 670 695 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF184-202 - 751 4.3e-41 138.2 148.7 18 19 0.0019 2.9 8.0 0.6 2 20 698 716 698 723 0.77 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF184-202 - 751 4.3e-41 138.2 148.7 19 19 3.4e-05 0.051 13.6 0.3 2 24 726 748 726 751 0.90 C2H2-type zinc finger KRAB PF01352.27 42 ZNF184-202 - 751 1.5e-22 79.0 0.1 1 1 2e-25 3e-22 78.0 0.1 2 42 28 68 27 68 0.98 KRAB box Zn-ribbon_8 PF09723.10 40 ZNF184-202 - 751 7.4e-16 58.0 111.5 1 17 0.0051 7.6 6.8 5.7 7 38 223 261 221 263 0.89 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF184-202 - 751 7.4e-16 58.0 111.5 2 17 0.00088 1.3 9.2 4.7 6 34 250 285 249 290 0.92 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF184-202 - 751 7.4e-16 58.0 111.5 3 17 0.00013 0.19 11.8 4.4 6 36 278 315 276 319 0.89 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF184-202 - 751 7.4e-16 58.0 111.5 4 17 6.1e-06 0.0091 16.1 3.2 6 36 306 343 305 347 0.89 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF184-202 - 751 7.4e-16 58.0 111.5 5 17 0.00058 0.86 9.8 5.0 6 38 334 373 333 374 0.90 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF184-202 - 751 7.4e-16 58.0 111.5 6 17 0.0001 0.15 12.2 5.1 6 34 362 397 361 400 0.93 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF184-202 - 751 7.4e-16 58.0 111.5 7 17 2.7e-05 0.04 14.0 4.7 6 35 390 426 388 430 0.85 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF184-202 - 751 7.4e-16 58.0 111.5 8 17 0.00022 0.32 11.1 5.4 6 34 418 453 417 456 0.91 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF184-202 - 751 7.4e-16 58.0 111.5 9 17 0.036 54 4.0 12.0 6 34 474 509 445 512 0.71 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF184-202 - 751 7.4e-16 58.0 111.5 10 17 0.00031 0.46 10.6 5.5 6 35 502 538 501 542 0.83 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF184-202 - 751 7.4e-16 58.0 111.5 11 17 0.0052 7.8 6.7 0.7 6 16 530 540 528 551 0.80 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF184-202 - 751 7.4e-16 58.0 111.5 12 17 3e-05 0.045 13.9 3.5 6 35 558 594 557 599 0.87 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF184-202 - 751 7.4e-16 58.0 111.5 13 17 0.00056 0.83 9.8 6.3 6 36 586 623 585 626 0.86 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF184-202 - 751 7.4e-16 58.0 111.5 14 17 0.0055 8.2 6.6 8.3 6 34 614 649 613 652 0.86 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF184-202 - 751 7.4e-16 58.0 111.5 15 17 0.00086 1.3 9.2 5.3 6 38 642 681 641 682 0.90 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF184-202 - 751 7.4e-16 58.0 111.5 16 17 0.0047 7 6.9 4.9 6 33 670 704 669 706 0.89 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF184-202 - 751 7.4e-16 58.0 111.5 17 17 0.00019 0.28 11.3 1.0 6 35 698 734 697 739 0.91 Zinc ribbon domain zf-C2H2_11 PF16622.5 29 ZNF184-202 - 751 4.7e-13 48.6 98.5 1 19 0.00032 0.48 10.2 3.3 3 24 220 241 218 243 0.91 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF184-202 - 751 4.7e-13 48.6 98.5 2 19 0.26 3.9e+02 0.9 0.0 5 26 250 271 247 272 0.82 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF184-202 - 751 4.7e-13 48.6 98.5 3 19 0.0066 9.9 6.0 0.1 5 26 278 299 276 300 0.93 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF184-202 - 751 4.7e-13 48.6 98.5 4 19 0.0051 7.6 6.4 0.2 5 26 306 327 303 328 0.91 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF184-202 - 751 4.7e-13 48.6 98.5 5 19 0.15 2.3e+02 1.6 0.1 7 16 336 345 333 355 0.81 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF184-202 - 751 4.7e-13 48.6 98.5 6 19 0.049 73 3.3 0.1 5 26 362 383 359 384 0.90 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF184-202 - 751 4.7e-13 48.6 98.5 7 19 0.0053 7.9 6.3 0.1 3 25 388 410 387 412 0.79 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF184-202 - 751 4.7e-13 48.6 98.5 8 19 0.022 33 4.3 0.2 6 23 419 436 416 438 0.89 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF184-202 - 751 4.7e-13 48.6 98.5 9 19 0.00056 0.83 9.5 0.1 7 26 448 467 445 468 0.94 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF184-202 - 751 4.7e-13 48.6 98.5 10 19 5e-05 0.075 12.8 1.0 5 26 474 495 471 496 0.94 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF184-202 - 751 4.7e-13 48.6 98.5 11 19 0.029 43 4.0 0.1 7 23 504 520 501 522 0.88 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF184-202 - 751 4.7e-13 48.6 98.5 12 19 0.00093 1.4 8.7 0.1 4 26 529 551 526 552 0.90 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF184-202 - 751 4.7e-13 48.6 98.5 13 19 5.8e-05 0.087 12.6 0.6 5 26 558 579 555 580 0.94 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF184-202 - 751 4.7e-13 48.6 98.5 14 19 0.00053 0.79 9.5 0.3 5 26 586 607 584 608 0.93 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF184-202 - 751 4.7e-13 48.6 98.5 15 19 0.29 4.3e+02 0.8 1.2 6 23 615 632 613 634 0.83 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF184-202 - 751 4.7e-13 48.6 98.5 16 19 0.01 16 5.4 0.6 5 26 642 663 638 664 0.91 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF184-202 - 751 4.7e-13 48.6 98.5 17 19 0.36 5.3e+02 0.5 0.1 5 23 670 688 667 689 0.80 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF184-202 - 751 4.7e-13 48.6 98.5 18 19 0.23 3.4e+02 1.1 0.4 6 26 699 719 696 720 0.90 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF184-202 - 751 4.7e-13 48.6 98.5 19 19 0.05 75 3.2 0.9 7 25 728 746 726 748 0.91 zinc-finger C2H2-type zf_UBZ PF18439.1 32 ZNF184-202 - 751 2.7e-11 42.9 101.4 1 19 0.43 6.4e+02 0.1 1.3 4 13 223 232 220 233 0.84 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF184-202 - 751 2.7e-11 42.9 101.4 2 19 0.044 66 3.2 0.2 3 16 250 263 248 269 0.81 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF184-202 - 751 2.7e-11 42.9 101.4 3 19 0.0016 2.4 7.8 0.1 3 21 278 297 276 297 0.88 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF184-202 - 751 2.7e-11 42.9 101.4 4 19 0.0016 2.3 7.9 0.3 3 15 306 318 304 325 0.77 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF184-202 - 751 2.7e-11 42.9 101.4 5 19 0.00038 0.56 9.8 0.3 3 21 334 353 332 353 0.93 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF184-202 - 751 2.7e-11 42.9 101.4 6 19 0.0035 5.2 6.7 0.6 3 21 362 381 360 381 0.85 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF184-202 - 751 2.7e-11 42.9 101.4 7 19 0.0094 14 5.4 0.1 2 12 389 399 388 404 0.87 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF184-202 - 751 2.7e-11 42.9 101.4 8 19 0.001 1.5 8.5 0.6 3 21 418 437 416 437 0.92 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF184-202 - 751 2.7e-11 42.9 101.4 9 19 0.00022 0.33 10.6 0.0 3 20 446 464 444 465 0.91 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF184-202 - 751 2.7e-11 42.9 101.4 10 19 0.032 48 3.7 0.6 3 13 474 484 472 493 0.81 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF184-202 - 751 2.7e-11 42.9 101.4 11 19 0.0065 9.7 5.9 0.1 3 20 502 520 500 521 0.75 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF184-202 - 751 2.7e-11 42.9 101.4 12 19 0.0061 9.1 6.0 0.1 3 20 530 548 528 549 0.79 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF184-202 - 751 2.7e-11 42.9 101.4 13 19 0.01 15 5.3 0.2 3 13 558 568 556 577 0.83 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF184-202 - 751 2.7e-11 42.9 101.4 14 19 0.036 54 3.5 0.2 3 20 586 604 584 605 0.83 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF184-202 - 751 2.7e-11 42.9 101.4 15 19 0.021 32 4.2 1.2 3 20 614 632 612 633 0.75 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF184-202 - 751 2.7e-11 42.9 101.4 16 19 0.0066 9.8 5.9 1.1 3 21 642 661 640 661 0.89 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF184-202 - 751 2.7e-11 42.9 101.4 17 19 0.0014 2.1 8.0 0.6 3 21 670 689 668 689 0.94 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF184-202 - 751 2.7e-11 42.9 101.4 18 19 0.018 27 4.5 0.2 3 17 698 713 696 717 0.79 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF184-202 - 751 2.7e-11 42.9 101.4 19 19 0.21 3.2e+02 1.0 0.1 5 12 728 735 725 745 0.81 Ubiquitin-Binding Zinc Finger XPA_N PF01286.18 32 ZNF184-202 - 751 1.1e-10 41.3 99.6 1 19 0.43 6.5e+02 0.5 4.7 3 11 223 231 222 234 0.90 XPA protein N-terminal XPA_N PF01286.18 32 ZNF184-202 - 751 1.1e-10 41.3 99.6 2 19 0.0092 14 5.8 0.5 3 14 251 262 249 263 0.90 XPA protein N-terminal XPA_N PF01286.18 32 ZNF184-202 - 751 1.1e-10 41.3 99.6 3 19 0.026 38 4.4 0.2 3 11 279 287 277 289 0.87 XPA protein N-terminal XPA_N PF01286.18 32 ZNF184-202 - 751 1.1e-10 41.3 99.6 4 19 0.0023 3.4 7.8 0.2 3 12 307 316 305 318 0.89 XPA protein N-terminal XPA_N PF01286.18 32 ZNF184-202 - 751 1.1e-10 41.3 99.6 5 19 0.011 17 5.6 0.1 3 12 335 344 333 345 0.88 XPA protein N-terminal XPA_N PF01286.18 32 ZNF184-202 - 751 1.1e-10 41.3 99.6 6 19 0.0007 1 9.4 0.2 3 14 363 374 361 380 0.87 XPA protein N-terminal XPA_N PF01286.18 32 ZNF184-202 - 751 1.1e-10 41.3 99.6 7 19 0.018 26 5.0 0.2 3 11 391 399 390 401 0.90 XPA protein N-terminal XPA_N PF01286.18 32 ZNF184-202 - 751 1.1e-10 41.3 99.6 8 19 0.01 15 5.7 0.1 3 12 419 428 417 435 0.89 XPA protein N-terminal XPA_N PF01286.18 32 ZNF184-202 - 751 1.1e-10 41.3 99.6 9 19 0.033 49 4.1 0.1 3 11 447 455 445 458 0.89 XPA protein N-terminal XPA_N PF01286.18 32 ZNF184-202 - 751 1.1e-10 41.3 99.6 10 19 0.022 33 4.6 0.9 3 11 475 483 473 486 0.89 XPA protein N-terminal XPA_N PF01286.18 32 ZNF184-202 - 751 1.1e-10 41.3 99.6 11 19 0.013 20 5.3 0.4 3 15 503 513 501 517 0.82 XPA protein N-terminal XPA_N PF01286.18 32 ZNF184-202 - 751 1.1e-10 41.3 99.6 12 19 0.0029 4.4 7.4 0.2 3 14 531 542 529 545 0.89 XPA protein N-terminal XPA_N PF01286.18 32 ZNF184-202 - 751 1.1e-10 41.3 99.6 13 19 0.02 30 4.8 0.1 3 11 559 567 557 573 0.89 XPA protein N-terminal XPA_N PF01286.18 32 ZNF184-202 - 751 1.1e-10 41.3 99.6 14 19 0.031 47 4.1 0.1 3 12 587 596 585 599 0.88 XPA protein N-terminal XPA_N PF01286.18 32 ZNF184-202 - 751 1.1e-10 41.3 99.6 15 19 0.035 53 4.0 0.8 3 11 615 623 613 628 0.89 XPA protein N-terminal XPA_N PF01286.18 32 ZNF184-202 - 751 1.1e-10 41.3 99.6 16 19 0.011 16 5.6 0.3 3 14 643 654 641 660 0.86 XPA protein N-terminal XPA_N PF01286.18 32 ZNF184-202 - 751 1.1e-10 41.3 99.6 17 19 0.0037 5.6 7.1 0.2 3 14 671 682 669 688 0.86 XPA protein N-terminal XPA_N PF01286.18 32 ZNF184-202 - 751 1.1e-10 41.3 99.6 18 19 0.001 1.5 8.9 0.1 3 17 699 713 697 716 0.88 XPA protein N-terminal XPA_N PF01286.18 32 ZNF184-202 - 751 1.1e-10 41.3 99.6 19 19 0.27 4e+02 1.2 0.1 4 11 728 735 727 737 0.91 XPA protein N-terminal zf-C2H2_jaz PF12171.8 27 ZNF184-202 - 751 5.7e-08 32.8 115.6 1 19 3.7 5.5e+03 -2.2 1.6 4 23 224 243 223 244 0.73 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF184-202 - 751 5.7e-08 32.8 115.6 2 19 0.00022 0.33 11.3 0.5 2 22 250 270 249 270 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF184-202 - 751 5.7e-08 32.8 115.6 3 19 0.067 1e+02 3.4 0.0 2 20 278 296 277 298 0.79 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF184-202 - 751 5.7e-08 32.8 115.6 4 19 0.014 22 5.5 0.2 2 22 306 326 305 326 0.91 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF184-202 - 751 5.7e-08 32.8 115.6 5 19 0.2 2.9e+02 1.9 0.3 2 22 334 354 333 354 0.86 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF184-202 - 751 5.7e-08 32.8 115.6 6 19 1.7e-05 0.025 14.8 0.7 2 22 362 382 361 382 0.95 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF184-202 - 751 5.7e-08 32.8 115.6 7 19 0.0062 9.3 6.7 0.1 2 20 390 408 389 408 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF184-202 - 751 5.7e-08 32.8 115.6 8 19 0.00065 0.97 9.8 1.9 2 24 418 440 417 440 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF184-202 - 751 5.7e-08 32.8 115.6 9 19 0.17 2.6e+02 2.1 0.1 2 21 446 465 445 466 0.75 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF184-202 - 751 5.7e-08 32.8 115.6 10 19 0.68 1e+03 0.2 0.8 2 12 474 484 473 494 0.75 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF184-202 - 751 5.7e-08 32.8 115.6 11 19 0.0072 11 6.5 1.0 2 24 502 524 501 524 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF184-202 - 751 5.7e-08 32.8 115.6 12 19 8.3e-05 0.12 12.7 0.1 2 22 530 550 529 550 0.95 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF184-202 - 751 5.7e-08 32.8 115.6 13 19 0.058 86 3.6 0.2 4 21 560 577 557 578 0.81 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF184-202 - 751 5.7e-08 32.8 115.6 14 19 0.12 1.8e+02 2.6 0.5 2 22 586 606 585 606 0.90 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF184-202 - 751 5.7e-08 32.8 115.6 15 19 0.024 36 4.8 1.7 2 24 614 636 613 636 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF184-202 - 751 5.7e-08 32.8 115.6 16 19 0.33 5e+02 1.2 2.4 7 22 647 662 642 662 0.89 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF184-202 - 751 5.7e-08 32.8 115.6 17 19 0.00011 0.17 12.2 1.6 2 24 670 692 669 692 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF184-202 - 751 5.7e-08 32.8 115.6 18 19 0.004 6 7.3 0.6 2 22 698 718 697 718 0.90 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF184-202 - 751 5.7e-08 32.8 115.6 19 19 0.63 9.4e+02 0.3 0.1 4 22 728 746 725 746 0.87 Zinc-finger double-stranded RNA-binding # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF184-202.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF184-202.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF184-202.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF184-202.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF184-202.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:01:02 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZNF189-201 - 584 1.7e-117 379.1 119.1 1 18 0.0082 8.7 7.0 0.9 15 25 106 116 95 117 0.80 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF189-201 - 584 1.7e-117 379.1 119.1 2 18 7e-11 7.4e-08 32.5 1.6 3 25 122 144 120 145 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF189-201 - 584 1.7e-117 379.1 119.1 3 18 2.2e-10 2.3e-07 30.9 0.6 5 25 152 172 150 172 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF189-201 - 584 1.7e-117 379.1 119.1 4 18 2.8e-10 2.9e-07 30.6 0.2 2 25 177 200 176 201 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF189-201 - 584 1.7e-117 379.1 119.1 5 18 7.3e-12 7.7e-09 35.6 0.9 1 25 204 228 204 228 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF189-201 - 584 1.7e-117 379.1 119.1 6 18 1.2e-09 1.3e-06 28.5 5.9 1 25 232 256 232 257 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF189-201 - 584 1.7e-117 379.1 119.1 7 18 1.2e-09 1.3e-06 28.6 0.7 2 24 261 283 261 284 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF189-201 - 584 1.7e-117 379.1 119.1 8 18 5.6e-10 5.9e-07 29.6 0.2 2 25 289 312 288 313 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF189-201 - 584 1.7e-117 379.1 119.1 9 18 5.2e-11 5.5e-08 32.9 0.3 4 25 319 340 317 341 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF189-201 - 584 1.7e-117 379.1 119.1 10 18 2.4e-12 2.5e-09 37.1 1.2 1 25 344 368 344 369 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF189-201 - 584 1.7e-117 379.1 119.1 11 18 0.0075 7.9 7.1 0.1 2 15 373 386 372 401 0.73 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF189-201 - 584 1.7e-117 379.1 119.1 12 18 0.00054 0.57 10.7 2.5 11 25 410 424 409 424 0.90 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF189-201 - 584 1.7e-117 379.1 119.1 13 18 3.4e-11 3.5e-08 33.5 0.7 1 25 428 452 428 453 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF189-201 - 584 1.7e-117 379.1 119.1 14 18 2.8e-09 3e-06 27.4 0.1 4 25 459 480 457 481 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF189-201 - 584 1.7e-117 379.1 119.1 15 18 5.5e-11 5.8e-08 32.8 0.5 1 25 484 508 484 509 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF189-201 - 584 1.7e-117 379.1 119.1 16 18 3.4e-12 3.6e-09 36.6 0.4 2 25 513 536 512 537 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF189-201 - 584 1.7e-117 379.1 119.1 17 18 6.8e-05 0.071 13.6 0.4 1 25 540 567 540 568 0.82 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF189-201 - 584 1.7e-117 379.1 119.1 18 18 2.8 3e+03 -1.0 0.1 2 10 572 580 571 581 0.86 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZNF189-201 - 584 1.9e-85 276.8 131.0 1 16 2.1e-07 0.00022 21.5 2.4 1 23 106 128 106 128 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF189-201 - 584 1.9e-85 276.8 131.0 2 16 3.9e-08 4.1e-05 23.8 0.6 1 23 134 156 134 156 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF189-201 - 584 1.9e-85 276.8 131.0 3 16 1.5e-09 1.6e-06 28.3 0.8 1 23 162 184 162 184 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF189-201 - 584 1.9e-85 276.8 131.0 4 16 7.8e-08 8.2e-05 22.8 2.4 1 23 190 212 190 212 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF189-201 - 584 1.9e-85 276.8 131.0 5 16 2.3e-07 0.00025 21.3 3.1 1 23 218 240 218 240 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF189-201 - 584 1.9e-85 276.8 131.0 6 16 6.1e-08 6.4e-05 23.2 3.8 1 23 246 268 246 268 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF189-201 - 584 1.9e-85 276.8 131.0 7 16 1.9e-06 0.0021 18.4 1.0 1 23 274 296 274 296 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF189-201 - 584 1.9e-85 276.8 131.0 8 16 1.4e-06 0.0015 18.9 0.5 5 23 306 324 302 324 0.92 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF189-201 - 584 1.9e-85 276.8 131.0 9 16 3.4e-09 3.6e-06 27.1 3.3 1 23 330 352 330 352 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF189-201 - 584 1.9e-85 276.8 131.0 10 16 5.6e-09 6e-06 26.4 0.7 1 23 358 380 358 380 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF189-201 - 584 1.9e-85 276.8 131.0 11 16 9e-09 9.5e-06 25.8 0.9 1 23 414 436 414 436 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF189-201 - 584 1.9e-85 276.8 131.0 12 16 3.2e-08 3.4e-05 24.1 0.7 1 23 442 464 442 464 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF189-201 - 584 1.9e-85 276.8 131.0 13 16 2e-06 0.0021 18.4 1.7 1 23 470 492 470 492 0.93 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF189-201 - 584 1.9e-85 276.8 131.0 14 16 6.2e-09 6.6e-06 26.3 0.7 1 23 498 520 498 520 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF189-201 - 584 1.9e-85 276.8 131.0 15 16 8.3e-09 8.8e-06 25.9 1.6 1 23 526 548 526 548 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF189-201 - 584 1.9e-85 276.8 131.0 16 16 0.0042 4.4 8.0 1.0 1 23 557 579 557 579 0.96 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZNF189-201 - 584 8.9e-48 156.8 126.6 1 16 9.2e-05 0.097 13.6 2.3 1 23 106 128 106 129 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF189-201 - 584 8.9e-48 156.8 126.6 2 16 8.7e-05 0.092 13.6 0.7 1 23 134 156 134 157 0.87 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF189-201 - 584 8.9e-48 156.8 126.6 3 16 8.6e-07 0.00091 19.9 0.6 1 23 162 184 162 185 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF189-201 - 584 8.9e-48 156.8 126.6 4 16 1.4e-05 0.015 16.1 1.9 1 23 190 212 190 213 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF189-201 - 584 8.9e-48 156.8 126.6 5 16 0.00051 0.54 11.2 2.8 1 23 218 240 218 241 0.89 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF189-201 - 584 8.9e-48 156.8 126.6 6 16 0.00029 0.3 12.0 2.9 1 23 246 268 246 269 0.85 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF189-201 - 584 8.9e-48 156.8 126.6 7 16 0.00045 0.48 11.4 0.9 1 23 274 296 274 297 0.91 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF189-201 - 584 8.9e-48 156.8 126.6 8 16 0.00013 0.14 13.1 0.5 1 23 302 324 302 325 0.90 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF189-201 - 584 8.9e-48 156.8 126.6 9 16 4.9e-06 0.0052 17.5 2.8 1 23 330 352 330 353 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF189-201 - 584 8.9e-48 156.8 126.6 10 16 6.7e-06 0.0071 17.1 0.7 1 23 358 380 358 381 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF189-201 - 584 8.9e-48 156.8 126.6 11 16 7.5e-06 0.0079 16.9 0.9 1 23 414 436 414 437 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF189-201 - 584 8.9e-48 156.8 126.6 12 16 1.8e-05 0.019 15.7 0.7 1 23 442 464 442 465 0.90 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF189-201 - 584 8.9e-48 156.8 126.6 13 16 3.2e-05 0.034 15.0 1.6 1 23 470 492 470 493 0.91 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF189-201 - 584 8.9e-48 156.8 126.6 14 16 8.6e-06 0.0091 16.8 0.5 1 23 498 520 498 521 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF189-201 - 584 8.9e-48 156.8 126.6 15 16 3.2e-06 0.0034 18.1 1.0 1 23 526 548 526 549 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF189-201 - 584 8.9e-48 156.8 126.6 16 16 0.00056 0.59 11.1 1.1 1 23 557 579 557 580 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF189-201 - 584 5.7e-17 61.3 124.8 1 16 0.041 43 4.2 2.6 2 12 106 116 105 117 0.91 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF189-201 - 584 5.7e-17 61.3 124.8 2 16 0.0011 1.2 9.3 1.3 2 12 134 144 134 145 0.91 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF189-201 - 584 5.7e-17 61.3 124.8 3 16 0.0004 0.42 10.7 1.1 2 12 162 172 162 174 0.95 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF189-201 - 584 5.7e-17 61.3 124.8 4 16 0.011 12 6.1 1.1 2 21 190 209 190 214 0.81 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF189-201 - 584 5.7e-17 61.3 124.8 5 16 0.014 14 5.8 2.9 2 24 218 240 218 243 0.88 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF189-201 - 584 5.7e-17 61.3 124.8 6 16 0.0044 4.6 7.3 0.7 2 12 246 256 246 266 0.91 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF189-201 - 584 5.7e-17 61.3 124.8 7 16 0.013 13 5.9 0.5 2 12 274 284 274 296 0.85 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF189-201 - 584 5.7e-17 61.3 124.8 8 16 0.0089 9.4 6.4 0.4 2 20 302 320 302 326 0.76 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF189-201 - 584 5.7e-17 61.3 124.8 9 16 0.0001 0.11 12.6 3.4 2 22 330 350 330 353 0.89 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF189-201 - 584 5.7e-17 61.3 124.8 10 16 0.00055 0.58 10.2 1.1 2 24 358 380 358 383 0.87 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF189-201 - 584 5.7e-17 61.3 124.8 11 16 0.00015 0.15 12.1 0.9 2 12 414 424 413 424 0.92 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF189-201 - 584 5.7e-17 61.3 124.8 12 16 0.00023 0.25 11.4 0.4 2 20 442 460 442 466 0.77 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF189-201 - 584 5.7e-17 61.3 124.8 13 16 0.003 3.2 7.9 1.8 2 20 470 488 470 489 0.90 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF189-201 - 584 5.7e-17 61.3 124.8 14 16 5.6e-05 0.059 13.4 0.6 2 22 498 518 498 522 0.85 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF189-201 - 584 5.7e-17 61.3 124.8 15 16 0.00051 0.54 10.3 1.3 2 24 526 548 526 550 0.90 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF189-201 - 584 5.7e-17 61.3 124.8 16 16 0.01 11 6.1 0.9 2 12 557 567 556 580 0.80 C2H2-type zinc finger Zn-ribbon_8 PF09723.10 40 ZNF189-201 - 584 8.8e-17 60.9 81.4 1 12 0.12 1.3e+02 2.8 1.4 7 35 107 115 95 120 0.60 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF189-201 - 584 8.8e-17 60.9 81.4 2 12 0.017 18 5.5 6.7 7 38 107 145 105 146 0.87 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF189-201 - 584 8.8e-17 60.9 81.4 3 12 0.00098 1 9.5 4.7 6 35 134 170 133 173 0.91 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF189-201 - 584 8.8e-17 60.9 81.4 4 12 0.0082 8.6 6.6 0.3 6 18 162 174 161 189 0.82 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF189-201 - 584 8.8e-17 60.9 81.4 5 12 3.8e-05 0.04 14.0 2.0 6 34 190 225 189 230 0.92 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF189-201 - 584 8.8e-17 60.9 81.4 6 12 3.3e-05 0.034 14.2 1.7 6 36 246 283 245 285 0.91 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF189-201 - 584 8.8e-17 60.9 81.4 7 12 0.001 1.1 9.4 1.6 7 38 275 313 274 315 0.91 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF189-201 - 584 8.8e-17 60.9 81.4 8 12 0.33 3.5e+02 1.4 0.1 6 17 302 313 300 324 0.78 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF189-201 - 584 8.8e-17 60.9 81.4 9 12 4.4e-06 0.0047 17.0 4.9 6 38 330 369 329 370 0.90 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF189-201 - 584 8.8e-17 60.9 81.4 10 12 1.2e-06 0.0013 18.8 1.0 6 38 414 453 413 454 0.91 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF189-201 - 584 8.8e-17 60.9 81.4 11 12 6.3e-05 0.067 13.3 2.8 6 38 470 509 469 510 0.86 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF189-201 - 584 8.8e-17 60.9 81.4 12 12 0.0033 3.4 7.8 6.6 6 34 526 564 525 570 0.78 Zinc ribbon domain zf_UBZ PF18439.1 32 ZNF189-201 - 584 1e-10 41.0 85.3 1 16 0.077 82 2.9 1.3 3 12 106 115 104 125 0.80 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF189-201 - 584 1e-10 41.0 85.3 2 16 0.0023 2.5 7.8 0.2 3 20 134 152 132 153 0.82 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF189-201 - 584 1e-10 41.0 85.3 3 16 0.051 54 3.5 0.1 3 16 162 176 160 181 0.81 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF189-201 - 584 1e-10 41.0 85.3 4 16 0.016 17 5.1 0.2 3 15 190 202 188 209 0.80 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF189-201 - 584 1e-10 41.0 85.3 5 16 0.016 17 5.1 0.6 3 20 218 236 216 237 0.78 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF189-201 - 584 1e-10 41.0 85.3 6 16 0.002 2.1 8.0 0.3 3 21 246 265 244 265 0.90 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF189-201 - 584 1e-10 41.0 85.3 7 16 0.13 1.3e+02 2.3 0.1 4 15 275 286 273 293 0.76 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF189-201 - 584 1e-10 41.0 85.3 8 16 0.0056 5.9 6.6 0.1 3 21 302 321 300 321 0.84 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF189-201 - 584 1e-10 41.0 85.3 9 16 0.0025 2.7 7.7 0.8 3 15 330 342 328 349 0.78 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF189-201 - 584 1e-10 41.0 85.3 10 16 0.0064 6.7 6.4 0.3 3 20 358 376 356 377 0.78 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF189-201 - 584 1e-10 41.0 85.3 11 16 7.5e-05 0.079 12.6 0.2 2 20 413 432 412 433 0.83 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF189-201 - 584 1e-10 41.0 85.3 12 16 0.0085 9 6.0 0.1 3 21 442 461 440 461 0.84 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF189-201 - 584 1e-10 41.0 85.3 13 16 0.0091 9.6 5.9 0.4 3 14 470 481 468 489 0.84 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF189-201 - 584 1e-10 41.0 85.3 14 16 0.0068 7.1 6.3 0.2 3 18 498 514 496 517 0.76 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF189-201 - 584 1e-10 41.0 85.3 15 16 0.002 2.1 8.0 0.3 3 16 526 540 524 545 0.79 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF189-201 - 584 1e-10 41.0 85.3 16 16 0.1 1.1e+02 2.5 1.4 1 21 555 576 555 581 0.82 Ubiquitin-Binding Zinc Finger XPA_N PF01286.18 32 ZNF189-201 - 584 3.4e-08 33.4 81.6 1 16 0.01 11 6.2 0.4 3 11 107 115 106 117 0.89 XPA protein N-terminal XPA_N PF01286.18 32 ZNF189-201 - 584 3.4e-08 33.4 81.6 2 16 0.013 14 5.8 0.7 3 14 135 146 134 149 0.89 XPA protein N-terminal XPA_N PF01286.18 32 ZNF189-201 - 584 3.4e-08 33.4 81.6 3 16 0.085 90 3.2 0.1 3 14 163 174 161 177 0.89 XPA protein N-terminal XPA_N PF01286.18 32 ZNF189-201 - 584 3.4e-08 33.4 81.6 4 16 0.71 7.5e+02 0.3 0.2 3 12 191 200 189 201 0.82 XPA protein N-terminal XPA_N PF01286.18 32 ZNF189-201 - 584 3.4e-08 33.4 81.6 5 16 0.031 33 4.6 0.1 3 12 219 228 217 236 0.84 XPA protein N-terminal XPA_N PF01286.18 32 ZNF189-201 - 584 3.4e-08 33.4 81.6 6 16 0.081 85 3.3 0.1 3 13 247 257 245 264 0.76 XPA protein N-terminal XPA_N PF01286.18 32 ZNF189-201 - 584 3.4e-08 33.4 81.6 7 16 0.0023 2.4 8.3 0.0 3 17 275 289 273 292 0.83 XPA protein N-terminal XPA_N PF01286.18 32 ZNF189-201 - 584 3.4e-08 33.4 81.6 8 16 0.0043 4.5 7.4 0.4 4 14 304 314 302 320 0.77 XPA protein N-terminal XPA_N PF01286.18 32 ZNF189-201 - 584 3.4e-08 33.4 81.6 9 16 0.017 18 5.5 0.3 3 12 331 340 329 341 0.87 XPA protein N-terminal XPA_N PF01286.18 32 ZNF189-201 - 584 3.4e-08 33.4 81.6 10 16 0.001 1.1 9.4 0.6 3 14 359 370 357 371 0.88 XPA protein N-terminal XPA_N PF01286.18 32 ZNF189-201 - 584 3.4e-08 33.4 81.6 11 16 0.00078 0.82 9.8 0.2 3 14 415 426 414 429 0.91 XPA protein N-terminal XPA_N PF01286.18 32 ZNF189-201 - 584 3.4e-08 33.4 81.6 12 16 0.15 1.6e+02 2.4 0.2 4 14 444 454 442 460 0.75 XPA protein N-terminal XPA_N PF01286.18 32 ZNF189-201 - 584 3.4e-08 33.4 81.6 13 16 0.14 1.5e+02 2.6 0.1 4 12 472 480 470 481 0.88 XPA protein N-terminal XPA_N PF01286.18 32 ZNF189-201 - 584 3.4e-08 33.4 81.6 14 16 0.0019 2 8.6 0.1 3 12 499 508 497 514 0.89 XPA protein N-terminal XPA_N PF01286.18 32 ZNF189-201 - 584 3.4e-08 33.4 81.6 15 16 0.019 20 5.3 0.7 3 13 527 537 525 540 0.87 XPA protein N-terminal XPA_N PF01286.18 32 ZNF189-201 - 584 3.4e-08 33.4 81.6 16 16 0.65 6.9e+02 0.4 1.9 3 11 558 566 556 568 0.86 XPA protein N-terminal zf-C2H2_jaz PF12171.8 27 ZNF189-201 - 584 5.2e-07 29.8 82.1 1 14 0.013 13 6.2 2.7 2 22 106 126 105 126 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF189-201 - 584 5.2e-07 29.8 82.1 2 14 0.044 46 4.5 0.2 2 21 134 153 133 154 0.86 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF189-201 - 584 5.2e-07 29.8 82.1 3 14 0.0033 3.5 8.0 0.1 2 22 162 182 161 182 0.90 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF189-201 - 584 5.2e-07 29.8 82.1 4 14 0.54 5.7e+02 1.0 1.1 2 23 218 239 217 240 0.85 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF189-201 - 584 5.2e-07 29.8 82.1 5 14 0.026 28 5.2 0.5 4 22 248 266 245 266 0.89 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF189-201 - 584 5.2e-07 29.8 82.1 6 14 0.68 7.2e+02 0.7 0.1 2 21 274 293 273 294 0.78 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF189-201 - 584 5.2e-07 29.8 82.1 7 14 0.0013 1.4 9.3 0.0 4 22 304 322 301 322 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF189-201 - 584 5.2e-07 29.8 82.1 8 14 0.21 2.2e+02 2.3 0.3 4 12 332 340 329 341 0.87 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF189-201 - 584 5.2e-07 29.8 82.1 9 14 0.0012 1.3 9.4 0.0 2 22 358 378 357 378 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF189-201 - 584 5.2e-07 29.8 82.1 10 14 0.0036 3.8 7.9 0.3 2 22 414 434 413 434 0.90 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF189-201 - 584 5.2e-07 29.8 82.1 11 14 0.0026 2.7 8.4 0.0 4 22 444 462 441 462 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF189-201 - 584 5.2e-07 29.8 82.1 12 14 0.0049 5.2 7.5 0.0 2 22 498 518 497 518 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF189-201 - 584 5.2e-07 29.8 82.1 13 14 0.00014 0.15 12.4 1.2 2 22 526 546 525 546 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF189-201 - 584 5.2e-07 29.8 82.1 14 14 1.2 1.2e+03 -0.1 0.9 2 22 557 577 556 577 0.82 Zinc-finger double-stranded RNA-binding zf-C2H2_11 PF16622.5 29 ZNF189-201 - 584 6.5e-07 29.0 103.4 1 16 0.2 2.1e+02 1.8 0.9 4 13 105 114 102 116 0.78 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF189-201 - 584 6.5e-07 29.0 103.4 2 16 0.0098 10 6.0 0.1 5 15 134 144 131 153 0.90 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF189-201 - 584 6.5e-07 29.0 103.4 3 16 0.0018 1.8 8.4 0.3 7 26 164 183 161 184 0.93 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF189-201 - 584 6.5e-07 29.0 103.4 4 16 0.00011 0.11 12.2 1.9 5 26 190 211 187 212 0.94 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF189-201 - 584 6.5e-07 29.0 103.4 5 16 0.034 36 4.2 0.1 5 16 218 229 215 238 0.81 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF189-201 - 584 6.5e-07 29.0 103.4 6 16 0.071 75 3.2 0.8 6 26 247 267 244 268 0.82 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF189-201 - 584 6.5e-07 29.0 103.4 7 16 0.12 1.3e+02 2.5 0.3 5 20 274 289 271 296 0.74 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF189-201 - 584 6.5e-07 29.0 103.4 8 16 0.11 1.2e+02 2.6 1.4 7 26 304 323 302 324 0.83 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF189-201 - 584 6.5e-07 29.0 103.4 9 16 0.00013 0.14 12.0 2.0 5 26 330 351 327 352 0.94 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF189-201 - 584 6.5e-07 29.0 103.4 10 16 0.0039 4.1 7.3 0.7 5 26 358 379 356 380 0.91 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF189-201 - 584 6.5e-07 29.0 103.4 11 16 0.00026 0.27 11.0 0.3 3 26 412 435 410 436 0.92 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF189-201 - 584 6.5e-07 29.0 103.4 12 16 0.52 5.4e+02 0.5 1.4 7 26 444 463 442 464 0.83 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF189-201 - 584 6.5e-07 29.0 103.4 13 16 0.035 37 4.2 2.5 7 23 472 488 470 491 0.92 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF189-201 - 584 6.5e-07 29.0 103.4 14 16 0.0057 6.1 6.7 0.2 5 26 498 519 495 520 0.90 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF189-201 - 584 6.5e-07 29.0 103.4 15 16 0.011 12 5.8 0.2 5 26 526 547 523 548 0.90 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF189-201 - 584 6.5e-07 29.0 103.4 16 16 0.0091 9.6 6.1 0.3 4 23 556 575 554 578 0.91 zinc-finger C2H2-type # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF189-201.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF189-201.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF189-201.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF189-201.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF189-201.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:01:02 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZNF189-202 - 626 7e-117 377.1 119.1 1 18 0.0089 9.4 6.9 0.9 15 25 148 158 137 159 0.80 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF189-202 - 626 7e-117 377.1 119.1 2 18 7.6e-11 8e-08 32.4 1.6 3 25 164 186 162 187 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF189-202 - 626 7e-117 377.1 119.1 3 18 2.4e-10 2.5e-07 30.8 0.6 5 25 194 214 192 214 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF189-202 - 626 7e-117 377.1 119.1 4 18 3e-10 3.1e-07 30.5 0.2 2 25 219 242 218 243 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF189-202 - 626 7e-117 377.1 119.1 5 18 7.9e-12 8.3e-09 35.5 0.9 1 25 246 270 246 270 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF189-202 - 626 7e-117 377.1 119.1 6 18 1.3e-09 1.4e-06 28.4 5.9 1 25 274 298 274 299 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF189-202 - 626 7e-117 377.1 119.1 7 18 1.3e-09 1.4e-06 28.5 0.7 2 24 303 325 303 326 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF189-202 - 626 7e-117 377.1 119.1 8 18 6.1e-10 6.4e-07 29.5 0.2 2 25 331 354 330 355 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF189-202 - 626 7e-117 377.1 119.1 9 18 5.6e-11 5.9e-08 32.8 0.3 4 25 361 382 359 383 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF189-202 - 626 7e-117 377.1 119.1 10 18 2.6e-12 2.7e-09 37.0 1.2 1 25 386 410 386 411 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF189-202 - 626 7e-117 377.1 119.1 11 18 0.0081 8.6 7.0 0.1 2 15 415 428 414 443 0.73 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF189-202 - 626 7e-117 377.1 119.1 12 18 0.00059 0.62 10.6 2.5 11 25 452 466 451 466 0.90 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF189-202 - 626 7e-117 377.1 119.1 13 18 3.6e-11 3.8e-08 33.4 0.7 1 25 470 494 470 495 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF189-202 - 626 7e-117 377.1 119.1 14 18 3.1e-09 3.3e-06 27.3 0.1 4 25 501 522 499 523 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF189-202 - 626 7e-117 377.1 119.1 15 18 5.9e-11 6.3e-08 32.7 0.5 1 25 526 550 526 551 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF189-202 - 626 7e-117 377.1 119.1 16 18 3.7e-12 3.9e-09 36.5 0.4 2 25 555 578 554 579 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF189-202 - 626 7e-117 377.1 119.1 17 18 7.4e-05 0.078 13.4 0.4 1 25 582 609 582 610 0.82 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF189-202 - 626 7e-117 377.1 119.1 18 18 3 3.2e+03 -1.1 0.1 2 10 614 622 613 623 0.86 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZNF189-202 - 626 6.7e-85 275.1 131.0 1 16 2.2e-07 0.00024 21.4 2.4 1 23 148 170 148 170 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF189-202 - 626 6.7e-85 275.1 131.0 2 16 4.3e-08 4.5e-05 23.7 0.6 1 23 176 198 176 198 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF189-202 - 626 6.7e-85 275.1 131.0 3 16 1.6e-09 1.7e-06 28.2 0.8 1 23 204 226 204 226 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF189-202 - 626 6.7e-85 275.1 131.0 4 16 8.4e-08 8.9e-05 22.7 2.4 1 23 232 254 232 254 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF189-202 - 626 6.7e-85 275.1 131.0 5 16 2.5e-07 0.00027 21.2 3.1 1 23 260 282 260 282 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF189-202 - 626 6.7e-85 275.1 131.0 6 16 6.6e-08 7e-05 23.1 3.8 1 23 288 310 288 310 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF189-202 - 626 6.7e-85 275.1 131.0 7 16 2.1e-06 0.0022 18.3 1.0 1 23 316 338 316 338 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF189-202 - 626 6.7e-85 275.1 131.0 8 16 1.5e-06 0.0016 18.8 0.5 5 23 348 366 344 366 0.92 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF189-202 - 626 6.7e-85 275.1 131.0 9 16 3.7e-09 3.9e-06 27.0 3.3 1 23 372 394 372 394 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF189-202 - 626 6.7e-85 275.1 131.0 10 16 6.1e-09 6.5e-06 26.3 0.7 1 23 400 422 400 422 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF189-202 - 626 6.7e-85 275.1 131.0 11 16 9.8e-09 1e-05 25.7 0.9 1 23 456 478 456 478 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF189-202 - 626 6.7e-85 275.1 131.0 12 16 3.5e-08 3.7e-05 23.9 0.7 1 23 484 506 484 506 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF189-202 - 626 6.7e-85 275.1 131.0 13 16 2.1e-06 0.0023 18.3 1.7 1 23 512 534 512 534 0.93 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF189-202 - 626 6.7e-85 275.1 131.0 14 16 6.8e-09 7.1e-06 26.2 0.7 1 23 540 562 540 562 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF189-202 - 626 6.7e-85 275.1 131.0 15 16 9.1e-09 9.5e-06 25.8 1.6 1 23 568 590 568 590 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF189-202 - 626 6.7e-85 275.1 131.0 16 16 0.0045 4.8 7.8 1.0 1 23 599 621 599 621 0.96 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZNF189-202 - 626 3.2e-47 155.1 126.6 1 16 0.0001 0.11 13.4 2.3 1 23 148 170 148 171 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF189-202 - 626 3.2e-47 155.1 126.6 2 16 9.4e-05 0.1 13.5 0.7 1 23 176 198 176 199 0.87 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF189-202 - 626 3.2e-47 155.1 126.6 3 16 9.3e-07 0.00098 19.8 0.6 1 23 204 226 204 227 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF189-202 - 626 3.2e-47 155.1 126.6 4 16 1.5e-05 0.016 16.0 1.9 1 23 232 254 232 255 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF189-202 - 626 3.2e-47 155.1 126.6 5 16 0.00055 0.58 11.1 2.8 1 23 260 282 260 283 0.89 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF189-202 - 626 3.2e-47 155.1 126.6 6 16 0.00031 0.33 11.9 2.9 1 23 288 310 288 311 0.85 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF189-202 - 626 3.2e-47 155.1 126.6 7 16 0.00049 0.52 11.3 0.9 1 23 316 338 316 339 0.91 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF189-202 - 626 3.2e-47 155.1 126.6 8 16 0.00015 0.15 12.9 0.5 1 23 344 366 344 367 0.90 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF189-202 - 626 3.2e-47 155.1 126.6 9 16 5.3e-06 0.0056 17.4 2.8 1 23 372 394 372 395 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF189-202 - 626 3.2e-47 155.1 126.6 10 16 7.3e-06 0.0077 17.0 0.7 1 23 400 422 400 423 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF189-202 - 626 3.2e-47 155.1 126.6 11 16 8.1e-06 0.0086 16.8 0.9 1 23 456 478 456 479 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF189-202 - 626 3.2e-47 155.1 126.6 12 16 2e-05 0.021 15.6 0.7 1 23 484 506 484 507 0.90 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF189-202 - 626 3.2e-47 155.1 126.6 13 16 3.5e-05 0.037 14.9 1.6 1 23 512 534 512 535 0.91 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF189-202 - 626 3.2e-47 155.1 126.6 14 16 9.3e-06 0.0099 16.7 0.5 1 23 540 562 540 563 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF189-202 - 626 3.2e-47 155.1 126.6 15 16 3.5e-06 0.0037 18.0 1.0 1 23 568 590 568 591 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF189-202 - 626 3.2e-47 155.1 126.6 16 16 0.00061 0.64 11.0 1.1 1 23 599 621 599 622 0.94 C2H2-type zinc finger KRAB PF01352.27 42 ZNF189-202 - 626 2.2e-25 88.0 0.5 1 1 3.9e-28 4.1e-25 87.2 0.5 2 42 14 54 13 54 0.98 KRAB box Zn-ribbon_8 PF09723.10 40 ZNF189-202 - 626 1.6e-16 60.1 81.0 1 12 0.12 1.3e+02 2.8 1.3 7 35 149 157 137 162 0.60 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF189-202 - 626 1.6e-16 60.1 81.0 2 12 0.016 17 5.7 6.5 7 38 149 187 147 188 0.87 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF189-202 - 626 1.6e-16 60.1 81.0 3 12 0.001 1.1 9.5 4.7 6 35 176 212 174 216 0.91 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF189-202 - 626 1.6e-16 60.1 81.0 4 12 0.0005 0.53 10.4 3.7 6 34 204 239 202 243 0.90 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF189-202 - 626 1.6e-16 60.1 81.0 5 12 4.8e-05 0.05 13.7 2.2 6 34 232 267 231 272 0.92 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF189-202 - 626 1.6e-16 60.1 81.0 6 12 3.6e-05 0.038 14.1 1.7 6 36 288 325 287 328 0.91 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF189-202 - 626 1.6e-16 60.1 81.0 7 12 0.001 1.1 9.5 1.4 7 38 317 355 316 357 0.91 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF189-202 - 626 1.6e-16 60.1 81.0 8 12 0.35 3.7e+02 1.3 0.1 6 17 344 355 342 366 0.78 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF189-202 - 626 1.6e-16 60.1 81.0 9 12 4.8e-06 0.0051 16.9 4.9 6 38 372 411 371 412 0.90 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF189-202 - 626 1.6e-16 60.1 81.0 10 12 1.3e-06 0.0014 18.7 1.0 6 38 456 495 455 496 0.91 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF189-202 - 626 1.6e-16 60.1 81.0 11 12 6.9e-05 0.073 13.2 2.8 6 38 512 551 511 552 0.86 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF189-202 - 626 1.6e-16 60.1 81.0 12 12 0.0027 2.9 8.1 6.3 6 34 568 606 567 613 0.78 Zinc ribbon domain zf-C2H2_6 PF13912.6 27 ZNF189-202 - 626 2.5e-16 59.2 125.1 1 16 0.044 47 4.1 2.6 2 12 148 158 147 159 0.91 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF189-202 - 626 2.5e-16 59.2 125.1 2 16 0.0012 1.3 9.2 1.3 2 12 176 186 176 187 0.91 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF189-202 - 626 2.5e-16 59.2 125.1 3 16 0.00043 0.46 10.6 1.1 2 12 204 214 204 216 0.95 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF189-202 - 626 2.5e-16 59.2 125.1 4 16 0.012 13 5.9 1.1 2 21 232 251 232 256 0.81 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF189-202 - 626 2.5e-16 59.2 125.1 5 16 0.015 15 5.7 2.9 2 24 260 282 260 285 0.88 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF189-202 - 626 2.5e-16 59.2 125.1 6 16 0.0047 5 7.2 0.7 2 12 288 298 288 308 0.91 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF189-202 - 626 2.5e-16 59.2 125.1 7 16 0.014 14 5.8 0.5 2 12 316 326 316 338 0.85 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF189-202 - 626 2.5e-16 59.2 125.1 8 16 0.011 11 6.1 0.4 2 20 344 362 344 367 0.75 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF189-202 - 626 2.5e-16 59.2 125.1 9 16 0.00011 0.11 12.5 3.4 2 22 372 392 372 395 0.89 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF189-202 - 626 2.5e-16 59.2 125.1 10 16 0.0006 0.63 10.1 1.1 2 24 400 422 400 425 0.87 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF189-202 - 626 2.5e-16 59.2 125.1 11 16 0.00016 0.17 11.9 0.9 2 12 456 466 455 466 0.92 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF189-202 - 626 2.5e-16 59.2 125.1 12 16 0.00025 0.27 11.3 0.4 2 20 484 502 484 508 0.77 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF189-202 - 626 2.5e-16 59.2 125.1 13 16 0.0032 3.4 7.8 1.8 2 20 512 530 512 531 0.90 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF189-202 - 626 2.5e-16 59.2 125.1 14 16 6.1e-05 0.064 13.3 0.6 2 22 540 560 540 564 0.85 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF189-202 - 626 2.5e-16 59.2 125.1 15 16 0.00055 0.58 10.2 1.3 2 24 568 590 568 592 0.90 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF189-202 - 626 2.5e-16 59.2 125.1 16 16 0.011 12 6.0 0.9 2 12 599 609 598 622 0.80 C2H2-type zinc finger zf_UBZ PF18439.1 32 ZNF189-202 - 626 3.5e-10 39.3 85.3 1 16 0.083 88 2.8 1.3 3 12 148 157 146 167 0.80 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF189-202 - 626 3.5e-10 39.3 85.3 2 16 0.0025 2.7 7.7 0.2 3 20 176 194 174 195 0.82 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF189-202 - 626 3.5e-10 39.3 85.3 3 16 0.055 58 3.4 0.1 3 16 204 218 202 223 0.81 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF189-202 - 626 3.5e-10 39.3 85.3 4 16 0.017 18 5.0 0.2 3 15 232 244 230 251 0.80 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF189-202 - 626 3.5e-10 39.3 85.3 5 16 0.018 19 5.0 0.6 3 20 260 278 258 279 0.78 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF189-202 - 626 3.5e-10 39.3 85.3 6 16 0.0022 2.3 7.9 0.3 3 21 288 307 286 307 0.90 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF189-202 - 626 3.5e-10 39.3 85.3 7 16 0.14 1.4e+02 2.1 0.1 4 15 317 328 315 335 0.76 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF189-202 - 626 3.5e-10 39.3 85.3 8 16 0.006 6.4 6.5 0.1 3 21 344 363 342 363 0.84 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF189-202 - 626 3.5e-10 39.3 85.3 9 16 0.0027 2.9 7.6 0.8 3 15 372 384 370 391 0.78 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF189-202 - 626 3.5e-10 39.3 85.3 10 16 0.0069 7.3 6.3 0.3 3 20 400 418 398 419 0.78 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF189-202 - 626 3.5e-10 39.3 85.3 11 16 8.1e-05 0.085 12.5 0.2 2 20 455 474 454 475 0.83 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF189-202 - 626 3.5e-10 39.3 85.3 12 16 0.0092 9.7 5.9 0.1 3 21 484 503 482 503 0.84 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF189-202 - 626 3.5e-10 39.3 85.3 13 16 0.0098 10 5.8 0.4 3 14 512 523 510 531 0.84 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF189-202 - 626 3.5e-10 39.3 85.3 14 16 0.0073 7.7 6.2 0.2 3 18 540 556 538 559 0.76 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF189-202 - 626 3.5e-10 39.3 85.3 15 16 0.0022 2.3 7.9 0.3 3 16 568 582 566 587 0.79 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF189-202 - 626 3.5e-10 39.3 85.3 16 16 0.11 1.2e+02 2.4 1.4 1 21 597 618 597 623 0.82 Ubiquitin-Binding Zinc Finger XPA_N PF01286.18 32 ZNF189-202 - 626 1.1e-07 31.7 81.6 1 16 0.011 12 6.1 0.4 3 11 149 157 148 159 0.89 XPA protein N-terminal XPA_N PF01286.18 32 ZNF189-202 - 626 1.1e-07 31.7 81.6 2 16 0.014 15 5.7 0.7 3 14 177 188 176 191 0.89 XPA protein N-terminal XPA_N PF01286.18 32 ZNF189-202 - 626 1.1e-07 31.7 81.6 3 16 0.092 97 3.1 0.1 3 14 205 216 203 219 0.89 XPA protein N-terminal XPA_N PF01286.18 32 ZNF189-202 - 626 1.1e-07 31.7 81.6 4 16 0.77 8.1e+02 0.2 0.2 3 12 233 242 231 243 0.82 XPA protein N-terminal XPA_N PF01286.18 32 ZNF189-202 - 626 1.1e-07 31.7 81.6 5 16 0.034 36 4.5 0.1 3 12 261 270 259 278 0.84 XPA protein N-terminal XPA_N PF01286.18 32 ZNF189-202 - 626 1.1e-07 31.7 81.6 6 16 0.087 92 3.2 0.1 3 13 289 299 287 306 0.76 XPA protein N-terminal XPA_N PF01286.18 32 ZNF189-202 - 626 1.1e-07 31.7 81.6 7 16 0.0025 2.6 8.1 0.0 3 17 317 331 315 334 0.83 XPA protein N-terminal XPA_N PF01286.18 32 ZNF189-202 - 626 1.1e-07 31.7 81.6 8 16 0.0046 4.9 7.3 0.4 4 14 346 356 344 362 0.77 XPA protein N-terminal XPA_N PF01286.18 32 ZNF189-202 - 626 1.1e-07 31.7 81.6 9 16 0.018 19 5.4 0.3 3 12 373 382 371 383 0.87 XPA protein N-terminal XPA_N PF01286.18 32 ZNF189-202 - 626 1.1e-07 31.7 81.6 10 16 0.0011 1.2 9.2 0.6 3 14 401 412 399 413 0.88 XPA protein N-terminal XPA_N PF01286.18 32 ZNF189-202 - 626 1.1e-07 31.7 81.6 11 16 0.00084 0.88 9.7 0.2 3 14 457 468 456 471 0.91 XPA protein N-terminal XPA_N PF01286.18 32 ZNF189-202 - 626 1.1e-07 31.7 81.6 12 16 0.16 1.7e+02 2.3 0.2 4 14 486 496 484 502 0.75 XPA protein N-terminal XPA_N PF01286.18 32 ZNF189-202 - 626 1.1e-07 31.7 81.6 13 16 0.15 1.6e+02 2.5 0.1 4 12 514 522 512 523 0.88 XPA protein N-terminal XPA_N PF01286.18 32 ZNF189-202 - 626 1.1e-07 31.7 81.6 14 16 0.002 2.1 8.4 0.1 3 12 541 550 539 556 0.89 XPA protein N-terminal XPA_N PF01286.18 32 ZNF189-202 - 626 1.1e-07 31.7 81.6 15 16 0.021 22 5.2 0.7 3 13 569 579 567 582 0.87 XPA protein N-terminal XPA_N PF01286.18 32 ZNF189-202 - 626 1.1e-07 31.7 81.6 16 16 0.7 7.4e+02 0.3 1.9 3 11 600 608 598 610 0.86 XPA protein N-terminal # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF189-202.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF189-202.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF189-202.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF189-202.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF189-202.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:01:03 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZNF189-203 - 612 4.5e-117 377.8 119.1 1 18 0.0087 9.1 6.9 0.9 15 25 134 144 123 145 0.80 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF189-203 - 612 4.5e-117 377.8 119.1 2 18 7.4e-11 7.8e-08 32.4 1.6 3 25 150 172 148 173 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF189-203 - 612 4.5e-117 377.8 119.1 3 18 2.3e-10 2.5e-07 30.8 0.6 5 25 180 200 178 200 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF189-203 - 612 4.5e-117 377.8 119.1 4 18 2.9e-10 3.1e-07 30.5 0.2 2 25 205 228 204 229 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF189-203 - 612 4.5e-117 377.8 119.1 5 18 7.7e-12 8.1e-09 35.5 0.9 1 25 232 256 232 256 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF189-203 - 612 4.5e-117 377.8 119.1 6 18 1.3e-09 1.4e-06 28.5 5.9 1 25 260 284 260 285 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF189-203 - 612 4.5e-117 377.8 119.1 7 18 1.3e-09 1.4e-06 28.5 0.7 2 24 289 311 289 312 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF189-203 - 612 4.5e-117 377.8 119.1 8 18 5.9e-10 6.3e-07 29.5 0.2 2 25 317 340 316 341 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF189-203 - 612 4.5e-117 377.8 119.1 9 18 5.5e-11 5.8e-08 32.8 0.3 4 25 347 368 345 369 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF189-203 - 612 4.5e-117 377.8 119.1 10 18 2.5e-12 2.6e-09 37.1 1.2 1 25 372 396 372 397 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF189-203 - 612 4.5e-117 377.8 119.1 11 18 0.0079 8.3 7.0 0.1 2 15 401 414 400 429 0.73 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF189-203 - 612 4.5e-117 377.8 119.1 12 18 0.00057 0.6 10.6 2.5 11 25 438 452 437 452 0.90 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF189-203 - 612 4.5e-117 377.8 119.1 13 18 3.6e-11 3.7e-08 33.4 0.7 1 25 456 480 456 481 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF189-203 - 612 4.5e-117 377.8 119.1 14 18 3e-09 3.2e-06 27.3 0.1 4 25 487 508 485 509 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF189-203 - 612 4.5e-117 377.8 119.1 15 18 5.8e-11 6.1e-08 32.7 0.5 1 25 512 536 512 537 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF189-203 - 612 4.5e-117 377.8 119.1 16 18 3.6e-12 3.8e-09 36.6 0.4 2 25 541 564 540 565 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF189-203 - 612 4.5e-117 377.8 119.1 17 18 7.2e-05 0.076 13.5 0.4 1 25 568 595 568 596 0.82 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF189-203 - 612 4.5e-117 377.8 119.1 18 18 3 3.1e+03 -1.1 0.1 2 10 600 608 599 609 0.86 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZNF189-203 - 612 4.5e-85 275.6 131.0 1 16 2.2e-07 0.00023 21.4 2.4 1 23 134 156 134 156 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF189-203 - 612 4.5e-85 275.6 131.0 2 16 4.1e-08 4.4e-05 23.7 0.6 1 23 162 184 162 184 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF189-203 - 612 4.5e-85 275.6 131.0 3 16 1.6e-09 1.7e-06 28.2 0.8 1 23 190 212 190 212 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF189-203 - 612 4.5e-85 275.6 131.0 4 16 8.2e-08 8.7e-05 22.8 2.4 1 23 218 240 218 240 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF189-203 - 612 4.5e-85 275.6 131.0 5 16 2.5e-07 0.00026 21.3 3.1 1 23 246 268 246 268 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF189-203 - 612 4.5e-85 275.6 131.0 6 16 6.4e-08 6.8e-05 23.1 3.8 1 23 274 296 274 296 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF189-203 - 612 4.5e-85 275.6 131.0 7 16 2.1e-06 0.0022 18.4 1.0 1 23 302 324 302 324 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF189-203 - 612 4.5e-85 275.6 131.0 8 16 1.5e-06 0.0016 18.8 0.5 5 23 334 352 330 352 0.92 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF189-203 - 612 4.5e-85 275.6 131.0 9 16 3.6e-09 3.8e-06 27.0 3.3 1 23 358 380 358 380 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF189-203 - 612 4.5e-85 275.6 131.0 10 16 6e-09 6.3e-06 26.4 0.7 1 23 386 408 386 408 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF189-203 - 612 4.5e-85 275.6 131.0 11 16 9.5e-09 1e-05 25.7 0.9 1 23 442 464 442 464 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF189-203 - 612 4.5e-85 275.6 131.0 12 16 3.4e-08 3.6e-05 24.0 0.7 1 23 470 492 470 492 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF189-203 - 612 4.5e-85 275.6 131.0 13 16 2.1e-06 0.0022 18.4 1.7 1 23 498 520 498 520 0.93 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF189-203 - 612 4.5e-85 275.6 131.0 14 16 6.6e-09 6.9e-06 26.2 0.7 1 23 526 548 526 548 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF189-203 - 612 4.5e-85 275.6 131.0 15 16 8.8e-09 9.3e-06 25.8 1.6 1 23 554 576 554 576 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF189-203 - 612 4.5e-85 275.6 131.0 16 16 0.0044 4.6 7.9 1.0 1 23 585 607 585 607 0.96 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZNF189-203 - 612 2.1e-47 155.6 126.6 1 16 9.7e-05 0.1 13.5 2.3 1 23 134 156 134 157 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF189-203 - 612 2.1e-47 155.6 126.6 2 16 9.2e-05 0.097 13.6 0.7 1 23 162 184 162 185 0.87 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF189-203 - 612 2.1e-47 155.6 126.6 3 16 9.1e-07 0.00096 19.8 0.6 1 23 190 212 190 213 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF189-203 - 612 2.1e-47 155.6 126.6 4 16 1.5e-05 0.016 16.0 1.9 1 23 218 240 218 241 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF189-203 - 612 2.1e-47 155.6 126.6 5 16 0.00054 0.57 11.2 2.8 1 23 246 268 246 269 0.89 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF189-203 - 612 2.1e-47 155.6 126.6 6 16 0.0003 0.32 11.9 2.9 1 23 274 296 274 297 0.85 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF189-203 - 612 2.1e-47 155.6 126.6 7 16 0.00048 0.51 11.3 0.9 1 23 302 324 302 325 0.91 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF189-203 - 612 2.1e-47 155.6 126.6 8 16 0.00014 0.15 13.0 0.5 1 23 330 352 330 353 0.90 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF189-203 - 612 2.1e-47 155.6 126.6 9 16 5.2e-06 0.0055 17.4 2.8 1 23 358 380 358 381 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF189-203 - 612 2.1e-47 155.6 126.6 10 16 7.1e-06 0.0075 17.0 0.7 1 23 386 408 386 409 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF189-203 - 612 2.1e-47 155.6 126.6 11 16 7.9e-06 0.0084 16.9 0.9 1 23 442 464 442 465 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF189-203 - 612 2.1e-47 155.6 126.6 12 16 1.9e-05 0.021 15.7 0.7 1 23 470 492 470 493 0.90 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF189-203 - 612 2.1e-47 155.6 126.6 13 16 3.4e-05 0.036 14.9 1.6 1 23 498 520 498 521 0.91 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF189-203 - 612 2.1e-47 155.6 126.6 14 16 9.1e-06 0.0096 16.7 0.5 1 23 526 548 526 549 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF189-203 - 612 2.1e-47 155.6 126.6 15 16 3.4e-06 0.0036 18.0 1.0 1 23 554 576 554 577 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF189-203 - 612 2.1e-47 155.6 126.6 16 16 0.00059 0.63 11.0 1.1 1 23 585 607 585 608 0.94 C2H2-type zinc finger Zn-ribbon_8 PF09723.10 40 ZNF189-203 - 612 1.3e-16 60.4 81.1 1 12 0.13 1.4e+02 2.7 1.4 7 35 135 143 123 148 0.60 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF189-203 - 612 1.3e-16 60.4 81.1 2 12 0.017 18 5.6 6.6 7 38 135 173 133 174 0.87 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF189-203 - 612 1.3e-16 60.4 81.1 3 12 0.0011 1.2 9.3 4.9 6 35 162 198 160 201 0.91 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF189-203 - 612 1.3e-16 60.4 81.1 4 12 0.00055 0.58 10.3 3.9 6 34 190 225 189 229 0.90 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF189-203 - 612 1.3e-16 60.4 81.1 5 12 4e-05 0.042 14.0 1.9 6 34 218 253 217 258 0.92 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF189-203 - 612 1.3e-16 60.4 81.1 6 12 3.5e-05 0.037 14.2 1.7 6 36 274 311 273 314 0.91 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF189-203 - 612 1.3e-16 60.4 81.1 7 12 0.00099 1 9.5 1.4 7 38 303 341 302 343 0.91 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF189-203 - 612 1.3e-16 60.4 81.1 8 12 0.34 3.6e+02 1.4 0.1 6 17 330 341 328 352 0.78 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF189-203 - 612 1.3e-16 60.4 81.1 9 12 4.7e-06 0.005 16.9 4.9 6 38 358 397 357 398 0.90 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF189-203 - 612 1.3e-16 60.4 81.1 10 12 1.3e-06 0.0014 18.7 1.0 6 38 442 481 441 482 0.91 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF189-203 - 612 1.3e-16 60.4 81.1 11 12 6.7e-05 0.071 13.2 2.8 6 38 498 537 497 538 0.86 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF189-203 - 612 1.3e-16 60.4 81.1 12 12 0.0028 2.9 8.1 6.3 6 34 554 592 553 598 0.78 Zinc ribbon domain zf-C2H2_6 PF13912.6 27 ZNF189-203 - 612 1.7e-16 59.8 125.1 1 16 0.043 46 4.2 2.6 2 12 134 144 133 145 0.91 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF189-203 - 612 1.7e-16 59.8 125.1 2 16 0.0012 1.2 9.2 1.3 2 12 162 172 162 173 0.91 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF189-203 - 612 1.7e-16 59.8 125.1 3 16 0.00042 0.44 10.6 1.1 2 12 190 200 190 202 0.95 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF189-203 - 612 1.7e-16 59.8 125.1 4 16 0.012 12 6.0 1.1 2 21 218 237 218 242 0.81 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF189-203 - 612 1.7e-16 59.8 125.1 5 16 0.014 15 5.7 2.9 2 24 246 268 246 271 0.88 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF189-203 - 612 1.7e-16 59.8 125.1 6 16 0.0046 4.9 7.3 0.7 2 12 274 284 274 294 0.91 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF189-203 - 612 1.7e-16 59.8 125.1 7 16 0.013 14 5.8 0.5 2 12 302 312 302 324 0.85 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF189-203 - 612 1.7e-16 59.8 125.1 8 16 0.01 11 6.2 0.4 2 20 330 348 330 353 0.75 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF189-203 - 612 1.7e-16 59.8 125.1 9 16 0.00011 0.11 12.5 3.4 2 22 358 378 358 381 0.89 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF189-203 - 612 1.7e-16 59.8 125.1 10 16 0.00058 0.61 10.1 1.1 2 24 386 408 386 411 0.87 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF189-203 - 612 1.7e-16 59.8 125.1 11 16 0.00015 0.16 12.0 0.9 2 12 442 452 441 452 0.92 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF189-203 - 612 1.7e-16 59.8 125.1 12 16 0.00025 0.26 11.3 0.4 2 20 470 488 470 494 0.77 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF189-203 - 612 1.7e-16 59.8 125.1 13 16 0.0032 3.3 7.8 1.8 2 20 498 516 498 517 0.90 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF189-203 - 612 1.7e-16 59.8 125.1 14 16 5.9e-05 0.062 13.3 0.6 2 22 526 546 526 550 0.85 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF189-203 - 612 1.7e-16 59.8 125.1 15 16 0.00054 0.57 10.3 1.3 2 24 554 576 554 578 0.90 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF189-203 - 612 1.7e-16 59.8 125.1 16 16 0.011 12 6.1 0.9 2 12 585 595 584 608 0.80 C2H2-type zinc finger KRAB PF01352.27 42 ZNF189-203 - 612 2.7e-16 58.9 0.2 1 1 5.1e-19 5.4e-16 58.0 0.2 12 42 10 40 10 40 0.98 KRAB box zf_UBZ PF18439.1 32 ZNF189-203 - 612 2.4e-10 39.8 85.3 1 16 0.081 86 2.9 1.3 3 12 134 143 132 153 0.80 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF189-203 - 612 2.4e-10 39.8 85.3 2 16 0.0025 2.6 7.7 0.2 3 20 162 180 160 181 0.82 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF189-203 - 612 2.4e-10 39.8 85.3 3 16 0.054 57 3.4 0.1 3 16 190 204 188 209 0.81 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF189-203 - 612 2.4e-10 39.8 85.3 4 16 0.017 18 5.0 0.2 3 15 218 230 216 237 0.80 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF189-203 - 612 2.4e-10 39.8 85.3 5 16 0.017 18 5.0 0.6 3 20 246 264 244 265 0.78 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF189-203 - 612 2.4e-10 39.8 85.3 6 16 0.0021 2.2 7.9 0.3 3 21 274 293 272 293 0.90 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF189-203 - 612 2.4e-10 39.8 85.3 7 16 0.13 1.4e+02 2.2 0.1 4 15 303 314 301 321 0.76 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF189-203 - 612 2.4e-10 39.8 85.3 8 16 0.0059 6.2 6.5 0.1 3 21 330 349 328 349 0.84 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF189-203 - 612 2.4e-10 39.8 85.3 9 16 0.0027 2.8 7.6 0.8 3 15 358 370 356 377 0.78 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF189-203 - 612 2.4e-10 39.8 85.3 10 16 0.0067 7.1 6.3 0.3 3 20 386 404 384 405 0.78 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF189-203 - 612 2.4e-10 39.8 85.3 11 16 7.9e-05 0.083 12.5 0.2 2 20 441 460 440 461 0.83 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF189-203 - 612 2.4e-10 39.8 85.3 12 16 0.009 9.5 5.9 0.1 3 21 470 489 468 489 0.84 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF189-203 - 612 2.4e-10 39.8 85.3 13 16 0.0096 10 5.8 0.4 3 14 498 509 496 517 0.84 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF189-203 - 612 2.4e-10 39.8 85.3 14 16 0.0071 7.5 6.2 0.2 3 18 526 542 524 545 0.76 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF189-203 - 612 2.4e-10 39.8 85.3 15 16 0.0021 2.3 7.9 0.3 3 16 554 568 552 573 0.79 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF189-203 - 612 2.4e-10 39.8 85.3 16 16 0.11 1.1e+02 2.5 1.4 1 21 583 604 583 609 0.82 Ubiquitin-Binding Zinc Finger XPA_N PF01286.18 32 ZNF189-203 - 612 7.6e-08 32.3 81.6 1 16 0.011 11 6.1 0.4 3 11 135 143 134 145 0.89 XPA protein N-terminal XPA_N PF01286.18 32 ZNF189-203 - 612 7.6e-08 32.3 81.6 2 16 0.014 15 5.8 0.7 3 14 163 174 162 177 0.89 XPA protein N-terminal XPA_N PF01286.18 32 ZNF189-203 - 612 7.6e-08 32.3 81.6 3 16 0.09 95 3.2 0.1 3 14 191 202 189 205 0.89 XPA protein N-terminal XPA_N PF01286.18 32 ZNF189-203 - 612 7.6e-08 32.3 81.6 4 16 0.75 7.9e+02 0.2 0.2 3 12 219 228 217 229 0.82 XPA protein N-terminal XPA_N PF01286.18 32 ZNF189-203 - 612 7.6e-08 32.3 81.6 5 16 0.033 35 4.6 0.1 3 12 247 256 245 264 0.84 XPA protein N-terminal XPA_N PF01286.18 32 ZNF189-203 - 612 7.6e-08 32.3 81.6 6 16 0.085 90 3.2 0.1 3 13 275 285 273 292 0.76 XPA protein N-terminal XPA_N PF01286.18 32 ZNF189-203 - 612 7.6e-08 32.3 81.6 7 16 0.0024 2.6 8.2 0.0 3 17 303 317 301 320 0.83 XPA protein N-terminal XPA_N PF01286.18 32 ZNF189-203 - 612 7.6e-08 32.3 81.6 8 16 0.0045 4.7 7.3 0.4 4 14 332 342 330 348 0.77 XPA protein N-terminal XPA_N PF01286.18 32 ZNF189-203 - 612 7.6e-08 32.3 81.6 9 16 0.018 19 5.4 0.3 3 12 359 368 357 369 0.87 XPA protein N-terminal XPA_N PF01286.18 32 ZNF189-203 - 612 7.6e-08 32.3 81.6 10 16 0.0011 1.2 9.3 0.6 3 14 387 398 385 399 0.88 XPA protein N-terminal XPA_N PF01286.18 32 ZNF189-203 - 612 7.6e-08 32.3 81.6 11 16 0.00082 0.86 9.7 0.2 3 14 443 454 442 457 0.91 XPA protein N-terminal XPA_N PF01286.18 32 ZNF189-203 - 612 7.6e-08 32.3 81.6 12 16 0.16 1.7e+02 2.4 0.2 4 14 472 482 470 488 0.75 XPA protein N-terminal XPA_N PF01286.18 32 ZNF189-203 - 612 7.6e-08 32.3 81.6 13 16 0.15 1.5e+02 2.5 0.1 4 12 500 508 498 509 0.88 XPA protein N-terminal XPA_N PF01286.18 32 ZNF189-203 - 612 7.6e-08 32.3 81.6 14 16 0.002 2.1 8.5 0.1 3 12 527 536 525 542 0.89 XPA protein N-terminal XPA_N PF01286.18 32 ZNF189-203 - 612 7.6e-08 32.3 81.6 15 16 0.02 21 5.2 0.7 3 13 555 565 553 568 0.87 XPA protein N-terminal XPA_N PF01286.18 32 ZNF189-203 - 612 7.6e-08 32.3 81.6 16 16 0.69 7.2e+02 0.3 1.9 3 11 586 594 584 596 0.86 XPA protein N-terminal # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF189-203.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF189-203.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF189-203.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF189-203.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF189-203.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:01:03 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZNF189-204 - 531 2.5e-118 381.7 119.1 1 18 0.0069 7.8 7.1 0.9 15 25 53 63 42 64 0.80 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF189-204 - 531 2.5e-118 381.7 119.1 2 18 5.9e-11 6.6e-08 32.6 1.6 3 25 69 91 67 92 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF189-204 - 531 2.5e-118 381.7 119.1 3 18 1.9e-10 2.1e-07 31.1 0.6 5 25 99 119 97 119 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF189-204 - 531 2.5e-118 381.7 119.1 4 18 2.3e-10 2.6e-07 30.8 0.2 2 25 124 147 123 148 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF189-204 - 531 2.5e-118 381.7 119.1 5 18 6.1e-12 6.8e-09 35.8 0.9 1 25 151 175 151 175 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF189-204 - 531 2.5e-118 381.7 119.1 6 18 1e-09 1.2e-06 28.7 5.9 1 25 179 203 179 204 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF189-204 - 531 2.5e-118 381.7 119.1 7 18 1e-09 1.1e-06 28.7 0.7 2 24 208 230 208 231 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF189-204 - 531 2.5e-118 381.7 119.1 8 18 4.7e-10 5.3e-07 29.8 0.2 2 25 236 259 235 260 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF189-204 - 531 2.5e-118 381.7 119.1 9 18 4.4e-11 4.9e-08 33.0 0.3 4 25 266 287 264 288 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF189-204 - 531 2.5e-118 381.7 119.1 10 18 2e-12 2.2e-09 37.3 1.2 1 25 291 315 291 316 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF189-204 - 531 2.5e-118 381.7 119.1 11 18 0.0063 7.1 7.3 0.1 2 15 320 333 319 348 0.73 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF189-204 - 531 2.5e-118 381.7 119.1 12 18 0.00046 0.51 10.9 2.5 11 25 357 371 356 371 0.90 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF189-204 - 531 2.5e-118 381.7 119.1 13 18 2.8e-11 3.2e-08 33.6 0.7 1 25 375 399 375 400 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF189-204 - 531 2.5e-118 381.7 119.1 14 18 2.4e-09 2.7e-06 27.6 0.1 4 25 406 427 404 428 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF189-204 - 531 2.5e-118 381.7 119.1 15 18 4.6e-11 5.2e-08 33.0 0.5 1 25 431 455 431 456 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF189-204 - 531 2.5e-118 381.7 119.1 16 18 2.9e-12 3.2e-09 36.8 0.4 2 25 460 483 459 484 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF189-204 - 531 2.5e-118 381.7 119.1 17 18 5.7e-05 0.064 13.7 0.4 1 25 487 514 487 515 0.82 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF189-204 - 531 2.5e-118 381.7 119.1 18 18 2.4 2.7e+03 -0.9 0.1 2 10 519 527 518 528 0.86 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZNF189-204 - 531 3.2e-86 279.3 131.0 1 16 1.7e-07 0.00019 21.7 2.4 1 23 53 75 53 75 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF189-204 - 531 3.2e-86 279.3 131.0 2 16 3.3e-08 3.7e-05 23.9 0.6 1 23 81 103 81 103 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF189-204 - 531 3.2e-86 279.3 131.0 3 16 1.2e-09 1.4e-06 28.4 0.8 1 23 109 131 109 131 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF189-204 - 531 3.2e-86 279.3 131.0 4 16 6.5e-08 7.3e-05 23.0 2.4 1 23 137 159 137 159 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF189-204 - 531 3.2e-86 279.3 131.0 5 16 2e-07 0.00022 21.5 3.1 1 23 165 187 165 187 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF189-204 - 531 3.2e-86 279.3 131.0 6 16 5.1e-08 5.7e-05 23.3 3.8 1 23 193 215 193 215 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF189-204 - 531 3.2e-86 279.3 131.0 7 16 1.6e-06 0.0018 18.6 1.0 1 23 221 243 221 243 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF189-204 - 531 3.2e-86 279.3 131.0 8 16 1.2e-06 0.0013 19.1 0.5 5 23 253 271 249 271 0.92 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF189-204 - 531 3.2e-86 279.3 131.0 9 16 2.9e-09 3.3e-06 27.3 3.3 1 23 277 299 277 299 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF189-204 - 531 3.2e-86 279.3 131.0 10 16 4.7e-09 5.3e-06 26.6 0.7 1 23 305 327 305 327 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF189-204 - 531 3.2e-86 279.3 131.0 11 16 7.6e-09 8.5e-06 26.0 0.9 1 23 361 383 361 383 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF189-204 - 531 3.2e-86 279.3 131.0 12 16 2.7e-08 3e-05 24.2 0.7 1 23 389 411 389 411 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF189-204 - 531 3.2e-86 279.3 131.0 13 16 1.7e-06 0.0019 18.6 1.7 1 23 417 439 417 439 0.93 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF189-204 - 531 3.2e-86 279.3 131.0 14 16 5.2e-09 5.9e-06 26.5 0.7 1 23 445 467 445 467 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF189-204 - 531 3.2e-86 279.3 131.0 15 16 7e-09 7.9e-06 26.1 1.6 1 23 473 495 473 495 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF189-204 - 531 3.2e-86 279.3 131.0 16 16 0.0035 3.9 8.1 1.0 1 23 504 526 504 526 0.96 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZNF189-204 - 531 1.5e-48 159.2 126.6 1 16 7.7e-05 0.087 13.7 2.3 1 23 53 75 53 76 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF189-204 - 531 1.5e-48 159.2 126.6 2 16 7.3e-05 0.082 13.8 0.7 1 23 81 103 81 104 0.87 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF189-204 - 531 1.5e-48 159.2 126.6 3 16 7.2e-07 0.00081 20.0 0.6 1 23 109 131 109 132 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF189-204 - 531 1.5e-48 159.2 126.6 4 16 1.2e-05 0.013 16.2 1.9 1 23 137 159 137 160 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF189-204 - 531 1.5e-48 159.2 126.6 5 16 0.00043 0.48 11.4 2.8 1 23 165 187 165 188 0.89 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF189-204 - 531 1.5e-48 159.2 126.6 6 16 0.00024 0.27 12.2 2.9 1 23 193 215 193 216 0.85 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF189-204 - 531 1.5e-48 159.2 126.6 7 16 0.00038 0.43 11.6 0.9 1 23 221 243 221 244 0.91 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF189-204 - 531 1.5e-48 159.2 126.6 8 16 0.00011 0.13 13.2 0.5 1 23 249 271 249 272 0.90 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF189-204 - 531 1.5e-48 159.2 126.6 9 16 4.1e-06 0.0046 17.7 2.8 1 23 277 299 277 300 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF189-204 - 531 1.5e-48 159.2 126.6 10 16 5.6e-06 0.0063 17.3 0.7 1 23 305 327 305 328 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF189-204 - 531 1.5e-48 159.2 126.6 11 16 6.3e-06 0.0071 17.1 0.9 1 23 361 383 361 384 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF189-204 - 531 1.5e-48 159.2 126.6 12 16 1.5e-05 0.017 15.9 0.7 1 23 389 411 389 412 0.90 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF189-204 - 531 1.5e-48 159.2 126.6 13 16 2.7e-05 0.03 15.1 1.6 1 23 417 439 417 440 0.91 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF189-204 - 531 1.5e-48 159.2 126.6 14 16 7.2e-06 0.0081 16.9 0.5 1 23 445 467 445 468 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF189-204 - 531 1.5e-48 159.2 126.6 15 16 2.7e-06 0.003 18.2 1.0 1 23 473 495 473 496 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF189-204 - 531 1.5e-48 159.2 126.6 16 16 0.00047 0.53 11.3 1.1 1 23 504 526 504 527 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF189-204 - 531 1e-17 63.7 124.8 1 16 0.035 39 4.4 2.6 2 12 53 63 52 64 0.91 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF189-204 - 531 1e-17 63.7 124.8 2 16 0.00093 1 9.4 1.3 2 12 81 91 81 92 0.91 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF189-204 - 531 1e-17 63.7 124.8 3 16 0.00034 0.38 10.8 1.1 2 12 109 119 109 121 0.95 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF189-204 - 531 1e-17 63.7 124.8 4 16 0.0094 11 6.2 1.1 2 21 137 156 137 161 0.81 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF189-204 - 531 1e-17 63.7 124.8 5 16 0.011 13 5.9 2.9 2 24 165 187 165 190 0.88 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF189-204 - 531 1e-17 63.7 124.8 6 16 0.0037 4.2 7.5 0.7 2 12 193 203 193 213 0.91 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF189-204 - 531 1e-17 63.7 124.8 7 16 0.011 12 6.0 0.5 2 12 221 231 221 243 0.85 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF189-204 - 531 1e-17 63.7 124.8 8 16 0.0075 8.4 6.5 0.4 2 20 249 267 249 273 0.76 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF189-204 - 531 1e-17 63.7 124.8 9 16 8.4e-05 0.095 12.7 3.4 2 22 277 297 277 300 0.89 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF189-204 - 531 1e-17 63.7 124.8 10 16 0.00046 0.52 10.4 1.1 2 24 305 327 305 330 0.87 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF189-204 - 531 1e-17 63.7 124.8 11 16 0.00012 0.14 12.2 0.9 2 12 361 371 360 371 0.92 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF189-204 - 531 1e-17 63.7 124.8 12 16 0.0002 0.22 11.6 0.4 2 20 389 407 389 413 0.77 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF189-204 - 531 1e-17 63.7 124.8 13 16 0.0025 2.8 8.0 1.8 2 20 417 435 417 436 0.90 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF189-204 - 531 1e-17 63.7 124.8 14 16 4.7e-05 0.053 13.5 0.6 2 22 445 465 445 469 0.85 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF189-204 - 531 1e-17 63.7 124.8 15 16 0.00043 0.48 10.5 1.3 2 24 473 495 473 497 0.90 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF189-204 - 531 1e-17 63.7 124.8 16 16 0.0089 9.9 6.3 0.9 2 12 504 514 503 527 0.80 C2H2-type zinc finger Zn-ribbon_8 PF09723.10 40 ZNF189-204 - 531 3.8e-17 62.1 81.8 1 11 0.095 1.1e+02 3.1 1.3 7 35 54 62 42 67 0.60 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF189-204 - 531 3.8e-17 62.1 81.8 2 11 0.0041 4.6 7.4 5.0 7 38 54 92 53 93 0.86 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF189-204 - 531 3.8e-17 62.1 81.8 3 11 0.00084 0.94 9.6 4.8 6 35 81 117 80 121 0.91 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF189-204 - 531 3.8e-17 62.1 81.8 4 11 0.0031 3.5 7.8 3.8 6 32 109 142 108 142 0.91 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF189-204 - 531 3.8e-17 62.1 81.8 5 11 3.3e-05 0.037 14.2 2.0 6 34 137 172 136 177 0.92 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF189-204 - 531 3.8e-17 62.1 81.8 6 11 2.8e-05 0.032 14.4 1.8 6 36 193 230 192 233 0.91 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF189-204 - 531 3.8e-17 62.1 81.8 7 11 0.00089 0.99 9.6 1.6 7 38 222 260 221 271 0.93 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF189-204 - 531 3.8e-17 62.1 81.8 8 11 3.7e-06 0.0042 17.2 4.9 6 38 277 316 276 317 0.90 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF189-204 - 531 3.8e-17 62.1 81.8 9 11 1e-06 0.0012 19.0 1.0 6 38 361 400 360 401 0.91 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF189-204 - 531 3.8e-17 62.1 81.8 10 11 4.7e-05 0.052 13.7 2.6 6 38 417 456 416 458 0.86 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF189-204 - 531 3.8e-17 62.1 81.8 11 11 0.0029 3.2 7.9 6.7 6 34 473 511 472 519 0.79 Zinc ribbon domain zf_UBZ PF18439.1 32 ZNF189-204 - 531 2e-11 43.3 85.4 1 16 0.065 73 3.1 1.3 3 12 53 62 51 72 0.80 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF189-204 - 531 2e-11 43.3 85.4 2 16 0.002 2.2 7.9 0.2 3 20 81 99 79 100 0.82 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF189-204 - 531 2e-11 43.3 85.4 3 16 0.043 48 3.7 0.1 3 16 109 123 107 128 0.81 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF189-204 - 531 2e-11 43.3 85.4 4 16 0.014 15 5.3 0.3 3 15 137 149 135 156 0.80 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF189-204 - 531 2e-11 43.3 85.4 5 16 0.014 15 5.2 0.6 3 20 165 183 163 184 0.78 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF189-204 - 531 2e-11 43.3 85.4 6 16 0.0017 1.9 8.2 0.3 3 21 193 212 191 212 0.90 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF189-204 - 531 2e-11 43.3 85.4 7 16 0.11 1.2e+02 2.4 0.1 4 15 222 233 220 240 0.76 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF189-204 - 531 2e-11 43.3 85.4 8 16 0.0047 5.3 6.7 0.1 3 21 249 268 247 268 0.84 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF189-204 - 531 2e-11 43.3 85.4 9 16 0.0021 2.4 7.8 0.8 3 15 277 289 275 296 0.78 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF189-204 - 531 2e-11 43.3 85.4 10 16 0.0054 6 6.5 0.3 3 20 305 323 303 324 0.78 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF189-204 - 531 2e-11 43.3 85.4 11 16 6.3e-05 0.071 12.7 0.2 2 20 360 379 359 380 0.83 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF189-204 - 531 2e-11 43.3 85.4 12 16 0.0072 8.1 6.1 0.1 3 21 389 408 387 408 0.84 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF189-204 - 531 2e-11 43.3 85.4 13 16 0.0077 8.6 6.1 0.4 3 14 417 428 415 436 0.84 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF189-204 - 531 2e-11 43.3 85.4 14 16 0.0057 6.4 6.5 0.2 3 18 445 461 443 464 0.76 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF189-204 - 531 2e-11 43.3 85.4 15 16 0.0017 1.9 8.1 0.3 3 16 473 487 471 492 0.79 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF189-204 - 531 2e-11 43.3 85.4 16 16 0.086 97 2.7 1.4 1 21 502 523 502 528 0.82 Ubiquitin-Binding Zinc Finger XPA_N PF01286.18 32 ZNF189-204 - 531 6.8e-09 35.6 81.6 1 16 0.0086 9.6 6.3 0.4 3 11 54 62 53 64 0.89 XPA protein N-terminal XPA_N PF01286.18 32 ZNF189-204 - 531 6.8e-09 35.6 81.6 2 16 0.011 12 6.0 0.7 3 14 82 93 81 96 0.89 XPA protein N-terminal XPA_N PF01286.18 32 ZNF189-204 - 531 6.8e-09 35.6 81.6 3 16 0.072 81 3.4 0.1 3 14 110 121 108 124 0.89 XPA protein N-terminal XPA_N PF01286.18 32 ZNF189-204 - 531 6.8e-09 35.6 81.6 4 16 0.6 6.7e+02 0.4 0.2 3 12 138 147 136 148 0.82 XPA protein N-terminal XPA_N PF01286.18 32 ZNF189-204 - 531 6.8e-09 35.6 81.6 5 16 0.027 30 4.8 0.1 3 12 166 175 164 183 0.84 XPA protein N-terminal XPA_N PF01286.18 32 ZNF189-204 - 531 6.8e-09 35.6 81.6 6 16 0.068 76 3.5 0.1 3 13 194 204 192 211 0.76 XPA protein N-terminal XPA_N PF01286.18 32 ZNF189-204 - 531 6.8e-09 35.6 81.6 7 16 0.0019 2.2 8.4 0.0 3 17 222 236 220 239 0.83 XPA protein N-terminal XPA_N PF01286.18 32 ZNF189-204 - 531 6.8e-09 35.6 81.6 8 16 0.0036 4 7.6 0.4 4 14 251 261 249 267 0.77 XPA protein N-terminal XPA_N PF01286.18 32 ZNF189-204 - 531 6.8e-09 35.6 81.6 9 16 0.014 16 5.6 0.3 3 12 278 287 276 288 0.87 XPA protein N-terminal XPA_N PF01286.18 32 ZNF189-204 - 531 6.8e-09 35.6 81.6 10 16 0.00088 0.99 9.5 0.6 3 14 306 317 304 318 0.88 XPA protein N-terminal XPA_N PF01286.18 32 ZNF189-204 - 531 6.8e-09 35.6 81.6 11 16 0.00066 0.74 9.9 0.2 3 14 362 373 361 376 0.91 XPA protein N-terminal XPA_N PF01286.18 32 ZNF189-204 - 531 6.8e-09 35.6 81.6 12 16 0.13 1.4e+02 2.6 0.2 4 14 391 401 389 407 0.75 XPA protein N-terminal XPA_N PF01286.18 32 ZNF189-204 - 531 6.8e-09 35.6 81.6 13 16 0.12 1.3e+02 2.7 0.1 4 12 419 427 417 428 0.88 XPA protein N-terminal XPA_N PF01286.18 32 ZNF189-204 - 531 6.8e-09 35.6 81.6 14 16 0.0016 1.8 8.7 0.1 3 12 446 455 444 461 0.89 XPA protein N-terminal XPA_N PF01286.18 32 ZNF189-204 - 531 6.8e-09 35.6 81.6 15 16 0.016 18 5.5 0.7 3 13 474 484 472 487 0.87 XPA protein N-terminal XPA_N PF01286.18 32 ZNF189-204 - 531 6.8e-09 35.6 81.6 16 16 0.55 6.2e+02 0.6 1.9 3 11 505 513 503 515 0.86 XPA protein N-terminal zf-C2H2_11 PF16622.5 29 ZNF189-204 - 531 1.2e-07 31.3 103.4 1 16 0.17 1.9e+02 2.0 0.9 4 13 52 61 49 63 0.78 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF189-204 - 531 1.2e-07 31.3 103.4 2 16 0.0083 9.3 6.1 0.1 5 15 81 91 78 100 0.90 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF189-204 - 531 1.2e-07 31.3 103.4 3 16 0.0015 1.7 8.5 0.3 7 26 111 130 108 131 0.93 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF189-204 - 531 1.2e-07 31.3 103.4 4 16 9e-05 0.1 12.4 1.9 5 26 137 158 134 159 0.94 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF189-204 - 531 1.2e-07 31.3 103.4 5 16 0.029 33 4.4 0.1 5 16 165 176 162 185 0.81 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF189-204 - 531 1.2e-07 31.3 103.4 6 16 0.06 67 3.4 0.8 6 26 194 214 191 215 0.82 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF189-204 - 531 1.2e-07 31.3 103.4 7 16 0.1 1.2e+02 2.6 0.3 5 20 221 236 218 243 0.74 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF189-204 - 531 1.2e-07 31.3 103.4 8 16 0.095 1.1e+02 2.7 1.4 7 26 251 270 249 271 0.83 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF189-204 - 531 1.2e-07 31.3 103.4 9 16 0.00011 0.12 12.1 2.0 5 26 277 298 274 299 0.94 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF189-204 - 531 1.2e-07 31.3 103.4 10 16 0.0033 3.7 7.4 0.7 5 26 305 326 303 327 0.91 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF189-204 - 531 1.2e-07 31.3 103.4 11 16 0.00022 0.24 11.2 0.3 3 26 359 382 357 383 0.92 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF189-204 - 531 1.2e-07 31.3 103.4 12 16 0.44 4.9e+02 0.6 1.4 7 26 391 410 389 411 0.83 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF189-204 - 531 1.2e-07 31.3 103.4 13 16 0.03 34 4.3 2.5 7 23 419 435 417 438 0.92 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF189-204 - 531 1.2e-07 31.3 103.4 14 16 0.0048 5.4 6.9 0.2 5 26 445 466 442 467 0.90 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF189-204 - 531 1.2e-07 31.3 103.4 15 16 0.0094 10 5.9 0.2 5 26 473 494 470 495 0.90 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF189-204 - 531 1.2e-07 31.3 103.4 16 16 0.0077 8.6 6.2 0.3 4 23 503 522 501 525 0.91 zinc-finger C2H2-type zf-C2H2_jaz PF12171.8 27 ZNF189-204 - 531 6.6e-07 29.5 84.6 1 14 0.011 12 6.3 2.7 2 22 53 73 52 73 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF189-204 - 531 6.6e-07 29.5 84.6 2 14 0.037 41 4.6 0.2 2 21 81 100 80 101 0.86 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF189-204 - 531 6.6e-07 29.5 84.6 3 14 0.0028 3.1 8.2 0.1 2 22 109 129 108 129 0.90 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF189-204 - 531 6.6e-07 29.5 84.6 4 14 0.45 5.1e+02 1.1 1.1 2 23 165 186 164 187 0.85 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF189-204 - 531 6.6e-07 29.5 84.6 5 14 0.022 25 5.3 0.5 4 22 195 213 192 213 0.89 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF189-204 - 531 6.6e-07 29.5 84.6 6 14 0.57 6.4e+02 0.8 0.1 2 21 221 240 220 241 0.78 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF189-204 - 531 6.6e-07 29.5 84.6 7 14 0.0011 1.3 9.4 0.0 4 22 251 269 248 269 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF189-204 - 531 6.6e-07 29.5 84.6 8 14 0.33 3.7e+02 1.6 1.2 4 12 279 287 276 291 0.89 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF189-204 - 531 6.6e-07 29.5 84.6 9 14 0.001 1.1 9.6 0.0 2 22 305 325 304 325 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF189-204 - 531 6.6e-07 29.5 84.6 10 14 0.0031 3.4 8.1 0.3 2 22 361 381 360 381 0.90 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF189-204 - 531 6.6e-07 29.5 84.6 11 14 0.0022 2.4 8.5 0.0 4 22 391 409 388 409 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF189-204 - 531 6.6e-07 29.5 84.6 12 14 0.0042 4.7 7.6 0.0 2 22 445 465 444 465 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF189-204 - 531 6.6e-07 29.5 84.6 13 14 0.00012 0.13 12.5 1.2 2 22 473 493 472 493 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF189-204 - 531 6.6e-07 29.5 84.6 14 14 0.98 1.1e+03 0.1 0.9 2 22 504 524 503 524 0.82 Zinc-finger double-stranded RNA-binding # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF189-204.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF189-204.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF189-204.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF189-204.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF189-204.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:01:04 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZNF19-201 - 458 1.5e-77 252.8 49.7 1 10 0.023 13 6.4 0.6 13 25 159 171 157 172 0.88 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF19-201 - 458 1.5e-77 252.8 49.7 2 10 5.6e-12 3.2e-09 36.8 0.7 2 25 176 199 175 199 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF19-201 - 458 1.5e-77 252.8 49.7 3 10 4.1e-11 2.4e-08 34.0 0.1 2 25 204 227 203 228 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF19-201 - 458 1.5e-77 252.8 49.7 4 10 7.8e-09 4.5e-06 26.8 0.1 1 26 231 256 231 256 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF19-201 - 458 1.5e-77 252.8 49.7 5 10 1.2e-10 7.1e-08 32.5 0.3 5 25 263 283 259 283 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF19-201 - 458 1.5e-77 252.8 49.7 6 10 1.7e-11 1e-08 35.2 0.4 2 25 288 311 288 312 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF19-201 - 458 1.5e-77 252.8 49.7 7 10 1.5e-10 8.9e-08 32.2 0.5 1 25 315 339 315 339 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF19-201 - 458 1.5e-77 252.8 49.7 8 10 3e-08 1.7e-05 25.0 0.2 2 25 344 367 343 368 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF19-201 - 458 1.5e-77 252.8 49.7 9 10 7.6e-09 4.4e-06 26.9 0.1 2 23 372 393 371 396 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF19-201 - 458 1.5e-77 252.8 49.7 10 10 1.7e-09 9.8e-07 28.9 0.6 1 26 399 424 399 424 0.91 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZNF19-201 - 458 1.6e-54 179.4 55.3 1 9 1.4e-07 8.4e-05 22.8 1.1 1 23 161 183 161 183 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF19-201 - 458 1.6e-54 179.4 55.3 2 9 2.1e-08 1.2e-05 25.5 0.2 1 23 189 211 189 211 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF19-201 - 458 1.6e-54 179.4 55.3 3 9 2.9e-09 1.7e-06 28.2 0.1 1 23 217 239 217 239 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF19-201 - 458 1.6e-54 179.4 55.3 4 9 2.2e-07 0.00013 22.2 0.6 1 23 245 267 245 267 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF19-201 - 458 1.6e-54 179.4 55.3 5 9 9.2e-07 0.00053 20.3 0.1 1 23 273 295 273 295 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF19-201 - 458 1.6e-54 179.4 55.3 6 9 1e-08 5.8e-06 26.5 1.7 1 23 301 323 301 323 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF19-201 - 458 1.6e-54 179.4 55.3 7 9 2.5e-06 0.0014 18.9 3.0 1 23 329 351 329 351 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF19-201 - 458 1.6e-54 179.4 55.3 8 9 4.8e-09 2.8e-06 27.5 0.1 1 23 357 379 357 379 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF19-201 - 458 1.6e-54 179.4 55.3 9 9 3.4e-07 0.00019 21.7 1.0 1 23 385 407 385 407 0.99 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZNF19-201 - 458 5.9e-33 110.7 50.8 1 9 5.2e-05 0.03 15.2 1.1 1 23 161 183 161 184 0.90 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF19-201 - 458 5.9e-33 110.7 50.8 2 9 9.7e-06 0.0056 17.4 0.2 1 23 189 211 189 212 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF19-201 - 458 5.9e-33 110.7 50.8 3 9 5.5e-06 0.0032 18.2 0.1 1 23 217 239 217 240 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF19-201 - 458 5.9e-33 110.7 50.8 4 9 5e-05 0.029 15.2 0.5 1 23 245 267 245 268 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF19-201 - 458 5.9e-33 110.7 50.8 5 9 1.5e-05 0.0085 16.9 0.1 1 23 273 295 273 296 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF19-201 - 458 5.9e-33 110.7 50.8 6 9 2.2e-05 0.013 16.3 1.2 1 23 301 323 301 324 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF19-201 - 458 5.9e-33 110.7 50.8 7 9 0.00022 0.13 13.2 2.2 1 23 329 351 329 352 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF19-201 - 458 5.9e-33 110.7 50.8 8 9 3.9e-05 0.022 15.5 0.2 3 23 359 379 357 380 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF19-201 - 458 5.9e-33 110.7 50.8 9 9 8.5e-05 0.049 14.5 0.7 1 23 385 407 385 408 0.95 C2H2-type zinc finger KRAB PF01352.27 42 ZNF19-201 - 458 6.1e-21 73.8 0.0 1 1 2e-23 1.2e-20 72.9 0.0 1 42 13 54 13 54 0.98 KRAB box zf-C2H2_11 PF16622.5 29 ZNF19-201 - 458 2.4e-15 56.0 36.2 1 9 0.44 2.5e+02 1.5 0.7 7 25 163 181 161 183 0.76 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF19-201 - 458 2.4e-15 56.0 36.2 2 9 0.00061 0.35 10.7 0.1 6 26 190 210 187 211 0.93 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF19-201 - 458 2.4e-15 56.0 36.2 3 9 0.00014 0.079 12.7 0.0 5 26 217 238 214 239 0.94 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF19-201 - 458 2.4e-15 56.0 36.2 4 9 0.0045 2.6 7.9 0.3 7 17 247 257 245 266 0.89 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF19-201 - 458 2.4e-15 56.0 36.2 5 9 0.065 38 4.2 0.0 6 26 274 294 271 295 0.88 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF19-201 - 458 2.4e-15 56.0 36.2 6 9 0.035 20 5.0 0.5 6 26 302 322 299 323 0.89 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF19-201 - 458 2.4e-15 56.0 36.2 7 9 0.032 18 5.2 0.7 7 26 331 350 328 351 0.93 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF19-201 - 458 2.4e-15 56.0 36.2 8 9 1.7e-06 0.00097 18.8 0.0 7 26 359 378 354 379 0.95 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF19-201 - 458 2.4e-15 56.0 36.2 9 9 0.0011 0.66 9.8 0.6 2 26 382 406 381 407 0.94 zinc-finger C2H2-type zf-C2H2_jaz PF12171.8 27 ZNF19-201 - 458 1.1e-12 47.8 24.4 1 9 0.031 18 5.8 0.1 2 12 161 171 160 171 0.90 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF19-201 - 458 1.1e-12 47.8 24.4 2 9 0.00068 0.4 11.0 0.0 2 22 189 209 188 209 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF19-201 - 458 1.1e-12 47.8 24.4 3 9 0.0046 2.7 8.4 0.1 4 22 219 237 216 237 0.91 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF19-201 - 458 1.1e-12 47.8 24.4 4 9 0.007 4 7.8 0.1 2 22 245 265 244 265 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF19-201 - 458 1.1e-12 47.8 24.4 5 9 0.33 1.9e+02 2.5 0.0 2 21 273 292 272 293 0.80 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF19-201 - 458 1.1e-12 47.8 24.4 6 9 0.028 16 5.9 0.1 2 22 301 321 300 321 0.90 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF19-201 - 458 1.1e-12 47.8 24.4 7 9 4.5 2.6e+03 -1.1 0.2 2 8 329 335 328 349 0.72 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF19-201 - 458 1.1e-12 47.8 24.4 8 9 0.00025 0.14 12.5 0.0 2 22 357 377 356 377 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF19-201 - 458 1.1e-12 47.8 24.4 9 9 0.05 29 5.1 0.2 2 22 385 405 384 405 0.92 Zinc-finger double-stranded RNA-binding Zn-ribbon_8 PF09723.10 40 ZNF19-201 - 458 2.4e-09 37.1 44.0 1 8 0.00079 0.46 10.6 4.1 6 34 161 196 160 199 0.90 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF19-201 - 458 2.4e-09 37.1 44.0 2 8 0.00041 0.24 11.6 5.2 6 34 189 224 188 227 0.92 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF19-201 - 458 2.4e-09 37.1 44.0 3 8 8.4e-05 0.049 13.8 3.8 6 34 217 252 216 256 0.91 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF19-201 - 458 2.4e-09 37.1 44.0 4 8 6.9e-05 0.04 14.0 4.3 6 34 245 280 244 283 0.91 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF19-201 - 458 2.4e-09 37.1 44.0 5 8 9.7e-05 0.056 13.6 4.9 6 35 273 309 272 313 0.91 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF19-201 - 458 2.4e-09 37.1 44.0 6 8 4.6e-05 0.027 14.6 2.8 6 34 301 336 299 340 0.92 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF19-201 - 458 2.4e-09 37.1 44.0 7 8 0.0045 2.6 8.2 5.9 6 35 329 365 328 400 0.71 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF19-201 - 458 2.4e-09 37.1 44.0 8 8 0.042 24 5.1 0.6 6 27 385 412 384 417 0.66 Zinc ribbon domain zf-C2H2_6 PF13912.6 27 ZNF19-201 - 458 1.2e-07 31.6 59.2 1 9 0.0028 1.6 8.8 2.5 2 14 161 173 161 174 0.92 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF19-201 - 458 1.2e-07 31.6 59.2 2 9 0.00044 0.25 11.4 0.3 2 12 189 199 189 212 0.79 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF19-201 - 458 1.2e-07 31.6 59.2 3 9 0.04 23 5.1 0.1 2 19 217 234 217 240 0.75 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF19-201 - 458 1.2e-07 31.6 59.2 4 9 0.011 6.6 6.8 1.6 3 13 246 256 245 257 0.89 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF19-201 - 458 1.2e-07 31.6 59.2 5 9 0.0026 1.5 8.9 0.6 2 11 273 282 273 283 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF19-201 - 458 1.2e-07 31.6 59.2 6 9 0.00087 0.51 10.4 3.0 2 13 301 312 301 322 0.86 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF19-201 - 458 1.2e-07 31.6 59.2 7 9 0.13 77 3.4 1.1 2 12 329 339 329 354 0.74 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF19-201 - 458 1.2e-07 31.6 59.2 8 9 0.53 3e+02 1.6 0.2 4 24 359 379 357 382 0.80 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF19-201 - 458 1.2e-07 31.6 59.2 9 9 0.0016 0.91 9.6 0.6 2 21 385 404 384 409 0.83 C2H2-type zinc finger zf_UBZ PF18439.1 32 ZNF19-201 - 458 1.5e-07 30.8 32.7 1 9 0.0046 2.6 7.7 0.2 3 13 161 171 159 174 0.89 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF19-201 - 458 1.5e-07 30.8 32.7 2 9 0.021 12 5.6 0.1 3 13 189 199 187 208 0.80 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF19-201 - 458 1.5e-07 30.8 32.7 3 9 0.014 7.9 6.2 0.1 3 15 217 229 215 236 0.80 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF19-201 - 458 1.5e-07 30.8 32.7 4 9 0.033 19 4.9 0.1 3 16 245 259 243 264 0.81 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF19-201 - 458 1.5e-07 30.8 32.7 5 9 0.11 65 3.2 0.1 3 12 273 282 271 286 0.87 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF19-201 - 458 1.5e-07 30.8 32.7 6 9 0.027 16 5.2 0.3 3 15 301 313 299 320 0.75 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF19-201 - 458 1.5e-07 30.8 32.7 7 9 0.16 93 2.7 0.1 3 20 329 347 327 348 0.82 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF19-201 - 458 1.5e-07 30.8 32.7 8 9 0.068 39 3.9 0.1 3 16 357 371 355 376 0.80 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF19-201 - 458 1.5e-07 30.8 32.7 9 9 0.0011 0.63 9.7 0.2 2 19 384 402 383 404 0.75 Ubiquitin-Binding Zinc Finger # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF19-201.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF19-201.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF19-201.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF19-201.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF19-201.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:01:05 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF19-202.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF19-202.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF19-202.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF19-202.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF19-202.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:01:05 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- KRAB PF01352.27 42 ZNF19-203 - 94 5.5e-22 77.1 0.0 1 1 8.5e-26 7.6e-22 76.7 0.0 1 42 13 54 13 54 0.98 KRAB box # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF19-203.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF19-203.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF19-203.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF19-203.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF19-203.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:01:05 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF19-204.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF19-204.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF19-204.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF19-204.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF19-204.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:01:06 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZNF19-205 - 458 1.5e-77 252.8 49.7 1 10 0.023 13 6.4 0.6 13 25 159 171 157 172 0.88 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF19-205 - 458 1.5e-77 252.8 49.7 2 10 5.6e-12 3.2e-09 36.8 0.7 2 25 176 199 175 199 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF19-205 - 458 1.5e-77 252.8 49.7 3 10 4.1e-11 2.4e-08 34.0 0.1 2 25 204 227 203 228 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF19-205 - 458 1.5e-77 252.8 49.7 4 10 7.8e-09 4.5e-06 26.8 0.1 1 26 231 256 231 256 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF19-205 - 458 1.5e-77 252.8 49.7 5 10 1.2e-10 7.1e-08 32.5 0.3 5 25 263 283 259 283 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF19-205 - 458 1.5e-77 252.8 49.7 6 10 1.7e-11 1e-08 35.2 0.4 2 25 288 311 288 312 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF19-205 - 458 1.5e-77 252.8 49.7 7 10 1.5e-10 8.9e-08 32.2 0.5 1 25 315 339 315 339 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF19-205 - 458 1.5e-77 252.8 49.7 8 10 3e-08 1.7e-05 25.0 0.2 2 25 344 367 343 368 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF19-205 - 458 1.5e-77 252.8 49.7 9 10 7.6e-09 4.4e-06 26.9 0.1 2 23 372 393 371 396 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF19-205 - 458 1.5e-77 252.8 49.7 10 10 1.7e-09 9.8e-07 28.9 0.6 1 26 399 424 399 424 0.91 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZNF19-205 - 458 1.6e-54 179.4 55.3 1 9 1.4e-07 8.4e-05 22.8 1.1 1 23 161 183 161 183 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF19-205 - 458 1.6e-54 179.4 55.3 2 9 2.1e-08 1.2e-05 25.5 0.2 1 23 189 211 189 211 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF19-205 - 458 1.6e-54 179.4 55.3 3 9 2.9e-09 1.7e-06 28.2 0.1 1 23 217 239 217 239 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF19-205 - 458 1.6e-54 179.4 55.3 4 9 2.2e-07 0.00013 22.2 0.6 1 23 245 267 245 267 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF19-205 - 458 1.6e-54 179.4 55.3 5 9 9.2e-07 0.00053 20.3 0.1 1 23 273 295 273 295 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF19-205 - 458 1.6e-54 179.4 55.3 6 9 1e-08 5.8e-06 26.5 1.7 1 23 301 323 301 323 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF19-205 - 458 1.6e-54 179.4 55.3 7 9 2.5e-06 0.0014 18.9 3.0 1 23 329 351 329 351 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF19-205 - 458 1.6e-54 179.4 55.3 8 9 4.8e-09 2.8e-06 27.5 0.1 1 23 357 379 357 379 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF19-205 - 458 1.6e-54 179.4 55.3 9 9 3.4e-07 0.00019 21.7 1.0 1 23 385 407 385 407 0.99 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZNF19-205 - 458 5.9e-33 110.7 50.8 1 9 5.2e-05 0.03 15.2 1.1 1 23 161 183 161 184 0.90 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF19-205 - 458 5.9e-33 110.7 50.8 2 9 9.7e-06 0.0056 17.4 0.2 1 23 189 211 189 212 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF19-205 - 458 5.9e-33 110.7 50.8 3 9 5.5e-06 0.0032 18.2 0.1 1 23 217 239 217 240 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF19-205 - 458 5.9e-33 110.7 50.8 4 9 5e-05 0.029 15.2 0.5 1 23 245 267 245 268 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF19-205 - 458 5.9e-33 110.7 50.8 5 9 1.5e-05 0.0085 16.9 0.1 1 23 273 295 273 296 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF19-205 - 458 5.9e-33 110.7 50.8 6 9 2.2e-05 0.013 16.3 1.2 1 23 301 323 301 324 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF19-205 - 458 5.9e-33 110.7 50.8 7 9 0.00022 0.13 13.2 2.2 1 23 329 351 329 352 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF19-205 - 458 5.9e-33 110.7 50.8 8 9 3.9e-05 0.022 15.5 0.2 3 23 359 379 357 380 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF19-205 - 458 5.9e-33 110.7 50.8 9 9 8.5e-05 0.049 14.5 0.7 1 23 385 407 385 408 0.95 C2H2-type zinc finger KRAB PF01352.27 42 ZNF19-205 - 458 6.1e-21 73.8 0.0 1 1 2e-23 1.2e-20 72.9 0.0 1 42 13 54 13 54 0.98 KRAB box zf-C2H2_11 PF16622.5 29 ZNF19-205 - 458 2.4e-15 56.0 36.2 1 9 0.44 2.5e+02 1.5 0.7 7 25 163 181 161 183 0.76 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF19-205 - 458 2.4e-15 56.0 36.2 2 9 0.00061 0.35 10.7 0.1 6 26 190 210 187 211 0.93 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF19-205 - 458 2.4e-15 56.0 36.2 3 9 0.00014 0.079 12.7 0.0 5 26 217 238 214 239 0.94 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF19-205 - 458 2.4e-15 56.0 36.2 4 9 0.0045 2.6 7.9 0.3 7 17 247 257 245 266 0.89 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF19-205 - 458 2.4e-15 56.0 36.2 5 9 0.065 38 4.2 0.0 6 26 274 294 271 295 0.88 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF19-205 - 458 2.4e-15 56.0 36.2 6 9 0.035 20 5.0 0.5 6 26 302 322 299 323 0.89 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF19-205 - 458 2.4e-15 56.0 36.2 7 9 0.032 18 5.2 0.7 7 26 331 350 328 351 0.93 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF19-205 - 458 2.4e-15 56.0 36.2 8 9 1.7e-06 0.00097 18.8 0.0 7 26 359 378 354 379 0.95 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF19-205 - 458 2.4e-15 56.0 36.2 9 9 0.0011 0.66 9.8 0.6 2 26 382 406 381 407 0.94 zinc-finger C2H2-type zf-C2H2_jaz PF12171.8 27 ZNF19-205 - 458 1.1e-12 47.8 24.4 1 9 0.031 18 5.8 0.1 2 12 161 171 160 171 0.90 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF19-205 - 458 1.1e-12 47.8 24.4 2 9 0.00068 0.4 11.0 0.0 2 22 189 209 188 209 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF19-205 - 458 1.1e-12 47.8 24.4 3 9 0.0046 2.7 8.4 0.1 4 22 219 237 216 237 0.91 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF19-205 - 458 1.1e-12 47.8 24.4 4 9 0.007 4 7.8 0.1 2 22 245 265 244 265 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF19-205 - 458 1.1e-12 47.8 24.4 5 9 0.33 1.9e+02 2.5 0.0 2 21 273 292 272 293 0.80 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF19-205 - 458 1.1e-12 47.8 24.4 6 9 0.028 16 5.9 0.1 2 22 301 321 300 321 0.90 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF19-205 - 458 1.1e-12 47.8 24.4 7 9 4.5 2.6e+03 -1.1 0.2 2 8 329 335 328 349 0.72 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF19-205 - 458 1.1e-12 47.8 24.4 8 9 0.00025 0.14 12.5 0.0 2 22 357 377 356 377 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF19-205 - 458 1.1e-12 47.8 24.4 9 9 0.05 29 5.1 0.2 2 22 385 405 384 405 0.92 Zinc-finger double-stranded RNA-binding Zn-ribbon_8 PF09723.10 40 ZNF19-205 - 458 2.4e-09 37.1 44.0 1 8 0.00079 0.46 10.6 4.1 6 34 161 196 160 199 0.90 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF19-205 - 458 2.4e-09 37.1 44.0 2 8 0.00041 0.24 11.6 5.2 6 34 189 224 188 227 0.92 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF19-205 - 458 2.4e-09 37.1 44.0 3 8 8.4e-05 0.049 13.8 3.8 6 34 217 252 216 256 0.91 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF19-205 - 458 2.4e-09 37.1 44.0 4 8 6.9e-05 0.04 14.0 4.3 6 34 245 280 244 283 0.91 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF19-205 - 458 2.4e-09 37.1 44.0 5 8 9.7e-05 0.056 13.6 4.9 6 35 273 309 272 313 0.91 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF19-205 - 458 2.4e-09 37.1 44.0 6 8 4.6e-05 0.027 14.6 2.8 6 34 301 336 299 340 0.92 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF19-205 - 458 2.4e-09 37.1 44.0 7 8 0.0045 2.6 8.2 5.9 6 35 329 365 328 400 0.71 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF19-205 - 458 2.4e-09 37.1 44.0 8 8 0.042 24 5.1 0.6 6 27 385 412 384 417 0.66 Zinc ribbon domain zf-C2H2_6 PF13912.6 27 ZNF19-205 - 458 1.2e-07 31.6 59.2 1 9 0.0028 1.6 8.8 2.5 2 14 161 173 161 174 0.92 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF19-205 - 458 1.2e-07 31.6 59.2 2 9 0.00044 0.25 11.4 0.3 2 12 189 199 189 212 0.79 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF19-205 - 458 1.2e-07 31.6 59.2 3 9 0.04 23 5.1 0.1 2 19 217 234 217 240 0.75 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF19-205 - 458 1.2e-07 31.6 59.2 4 9 0.011 6.6 6.8 1.6 3 13 246 256 245 257 0.89 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF19-205 - 458 1.2e-07 31.6 59.2 5 9 0.0026 1.5 8.9 0.6 2 11 273 282 273 283 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF19-205 - 458 1.2e-07 31.6 59.2 6 9 0.00087 0.51 10.4 3.0 2 13 301 312 301 322 0.86 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF19-205 - 458 1.2e-07 31.6 59.2 7 9 0.13 77 3.4 1.1 2 12 329 339 329 354 0.74 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF19-205 - 458 1.2e-07 31.6 59.2 8 9 0.53 3e+02 1.6 0.2 4 24 359 379 357 382 0.80 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF19-205 - 458 1.2e-07 31.6 59.2 9 9 0.0016 0.91 9.6 0.6 2 21 385 404 384 409 0.83 C2H2-type zinc finger zf_UBZ PF18439.1 32 ZNF19-205 - 458 1.5e-07 30.8 32.7 1 9 0.0046 2.6 7.7 0.2 3 13 161 171 159 174 0.89 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF19-205 - 458 1.5e-07 30.8 32.7 2 9 0.021 12 5.6 0.1 3 13 189 199 187 208 0.80 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF19-205 - 458 1.5e-07 30.8 32.7 3 9 0.014 7.9 6.2 0.1 3 15 217 229 215 236 0.80 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF19-205 - 458 1.5e-07 30.8 32.7 4 9 0.033 19 4.9 0.1 3 16 245 259 243 264 0.81 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF19-205 - 458 1.5e-07 30.8 32.7 5 9 0.11 65 3.2 0.1 3 12 273 282 271 286 0.87 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF19-205 - 458 1.5e-07 30.8 32.7 6 9 0.027 16 5.2 0.3 3 15 301 313 299 320 0.75 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF19-205 - 458 1.5e-07 30.8 32.7 7 9 0.16 93 2.7 0.1 3 20 329 347 327 348 0.82 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF19-205 - 458 1.5e-07 30.8 32.7 8 9 0.068 39 3.9 0.1 3 16 357 371 355 376 0.80 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF19-205 - 458 1.5e-07 30.8 32.7 9 9 0.0011 0.63 9.7 0.2 2 19 384 402 383 404 0.75 Ubiquitin-Binding Zinc Finger # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF19-205.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF19-205.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF19-205.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF19-205.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF19-205.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:01:06 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZNF19-206 - 388 2.1e-78 255.5 49.7 1 10 0.02 11 6.7 0.6 13 25 89 101 87 102 0.88 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF19-206 - 388 2.1e-78 255.5 49.7 2 10 4.8e-12 2.6e-09 37.1 0.7 2 25 106 129 105 129 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF19-206 - 388 2.1e-78 255.5 49.7 3 10 3.6e-11 1.9e-08 34.3 0.1 2 25 134 157 133 158 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF19-206 - 388 2.1e-78 255.5 49.7 4 10 6.8e-09 3.7e-06 27.1 0.1 1 26 161 186 161 186 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF19-206 - 388 2.1e-78 255.5 49.7 5 10 1.1e-10 5.8e-08 32.8 0.3 5 25 193 213 189 213 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF19-206 - 388 2.1e-78 255.5 49.7 6 10 1.5e-11 8.1e-09 35.5 0.4 2 25 218 241 218 242 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF19-206 - 388 2.1e-78 255.5 49.7 7 10 1.3e-10 7.3e-08 32.5 0.5 1 25 245 269 245 269 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF19-206 - 388 2.1e-78 255.5 49.7 8 10 2.6e-08 1.4e-05 25.3 0.2 2 25 274 297 273 298 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF19-206 - 388 2.1e-78 255.5 49.7 9 10 6.6e-09 3.6e-06 27.2 0.1 2 23 302 323 301 326 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF19-206 - 388 2.1e-78 255.5 49.7 10 10 1.5e-09 8e-07 29.2 0.6 1 26 329 354 329 354 0.91 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZNF19-206 - 388 6e-55 180.8 56.5 1 9 1.3e-07 6.8e-05 23.1 1.1 1 23 91 113 91 113 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF19-206 - 388 6e-55 180.8 56.5 2 9 1.8e-08 9.8e-06 25.7 0.2 1 23 119 141 119 141 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF19-206 - 388 6e-55 180.8 56.5 3 9 2.5e-09 1.4e-06 28.5 0.1 1 23 147 169 147 169 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF19-206 - 388 6e-55 180.8 56.5 4 9 1.9e-07 0.0001 22.5 0.6 1 23 175 197 175 197 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF19-206 - 388 6e-55 180.8 56.5 5 9 8e-07 0.00043 20.6 0.1 1 23 203 225 203 225 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF19-206 - 388 6e-55 180.8 56.5 6 9 8.7e-09 4.7e-06 26.8 1.7 1 23 231 253 231 253 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF19-206 - 388 6e-55 180.8 56.5 7 9 2.1e-06 0.0012 19.2 3.0 1 23 259 281 259 281 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF19-206 - 388 6e-55 180.8 56.5 8 9 4.1e-09 2.2e-06 27.8 0.1 1 23 287 309 287 309 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF19-206 - 388 6e-55 180.8 56.5 9 9 2.9e-07 0.00016 21.9 1.0 1 23 315 337 315 337 0.99 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZNF19-206 - 388 8.6e-33 110.2 53.9 1 9 4.5e-05 0.024 15.4 1.1 1 23 91 113 91 114 0.90 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF19-206 - 388 8.6e-33 110.2 53.9 2 9 8.4e-06 0.0046 17.7 0.2 1 23 119 141 119 142 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF19-206 - 388 8.6e-33 110.2 53.9 3 9 4.8e-06 0.0026 18.5 0.1 1 23 147 169 147 170 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF19-206 - 388 8.6e-33 110.2 53.9 4 9 4.4e-05 0.024 15.5 0.5 1 23 175 197 175 198 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF19-206 - 388 8.6e-33 110.2 53.9 5 9 1.3e-05 0.0069 17.1 0.1 1 23 203 225 203 226 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF19-206 - 388 8.6e-33 110.2 53.9 6 9 1.9e-05 0.01 16.6 1.2 1 23 231 253 231 254 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF19-206 - 388 8.6e-33 110.2 53.9 7 9 0.00019 0.1 13.5 2.2 1 23 259 281 259 282 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF19-206 - 388 8.6e-33 110.2 53.9 8 9 3.4e-05 0.018 15.8 0.2 3 23 289 309 287 310 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF19-206 - 388 8.6e-33 110.2 53.9 9 9 7.3e-05 0.04 14.8 0.7 1 23 315 337 315 338 0.95 C2H2-type zinc finger zf-C2H2_11 PF16622.5 29 ZNF19-206 - 388 4.2e-16 58.4 36.2 1 9 0.39 2.1e+02 1.8 0.7 7 26 93 112 91 113 0.76 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF19-206 - 388 4.2e-16 58.4 36.2 2 9 0.00053 0.29 10.9 0.1 6 26 120 140 117 141 0.93 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF19-206 - 388 4.2e-16 58.4 36.2 3 9 0.00012 0.065 13.0 0.0 5 26 147 168 144 169 0.94 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF19-206 - 388 4.2e-16 58.4 36.2 4 9 0.0039 2.1 8.2 0.3 7 17 177 187 175 196 0.89 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF19-206 - 388 4.2e-16 58.4 36.2 5 9 0.057 31 4.4 0.0 6 26 204 224 201 225 0.88 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF19-206 - 388 4.2e-16 58.4 36.2 6 9 0.031 17 5.3 0.5 6 26 232 252 229 253 0.89 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF19-206 - 388 4.2e-16 58.4 36.2 7 9 0.028 15 5.4 0.7 7 26 261 280 258 281 0.93 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF19-206 - 388 4.2e-16 58.4 36.2 8 9 1.5e-06 0.0008 19.1 0.0 7 26 289 308 284 309 0.95 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF19-206 - 388 4.2e-16 58.4 36.2 9 9 0.00098 0.53 10.1 0.6 2 26 312 336 311 337 0.94 zinc-finger C2H2-type zf-C2H2_jaz PF12171.8 27 ZNF19-206 - 388 2.1e-13 50.1 24.4 1 9 0.027 15 6.0 0.1 2 12 91 101 90 101 0.90 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF19-206 - 388 2.1e-13 50.1 24.4 2 9 0.0006 0.32 11.3 0.0 2 22 119 139 118 139 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF19-206 - 388 2.1e-13 50.1 24.4 3 9 0.004 2.2 8.7 0.1 4 22 149 167 146 167 0.91 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF19-206 - 388 2.1e-13 50.1 24.4 4 9 0.0061 3.3 8.1 0.1 2 22 175 195 174 195 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF19-206 - 388 2.1e-13 50.1 24.4 5 9 0.29 1.6e+02 2.8 0.0 2 21 203 222 202 223 0.80 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF19-206 - 388 2.1e-13 50.1 24.4 6 9 0.025 13 6.2 0.1 2 22 231 251 230 251 0.90 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF19-206 - 388 2.1e-13 50.1 24.4 7 9 3.9 2.1e+03 -0.9 0.2 2 8 259 265 258 279 0.72 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF19-206 - 388 2.1e-13 50.1 24.4 8 9 0.00022 0.12 12.7 0.0 2 22 287 307 286 307 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF19-206 - 388 2.1e-13 50.1 24.4 9 9 0.043 24 5.4 0.2 2 22 315 335 314 335 0.92 Zinc-finger double-stranded RNA-binding Zn-ribbon_8 PF09723.10 40 ZNF19-206 - 388 8.5e-10 38.6 44.2 1 9 0.00094 0.51 10.5 4.5 6 34 91 126 90 129 0.90 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF19-206 - 388 8.5e-10 38.6 44.2 2 9 0.00038 0.21 11.8 5.3 6 34 119 154 118 157 0.92 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF19-206 - 388 8.5e-10 38.6 44.2 3 9 8.5e-05 0.046 13.8 4.0 6 34 147 182 146 185 0.92 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF19-206 - 388 8.5e-10 38.6 44.2 4 9 5.2e-05 0.028 14.5 4.2 6 34 175 210 174 214 0.91 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF19-206 - 388 8.5e-10 38.6 44.2 5 9 7e-05 0.038 14.1 4.7 6 35 203 239 201 243 0.92 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF19-206 - 388 8.5e-10 38.6 44.2 6 9 3.9e-05 0.021 14.9 2.7 6 34 231 266 230 269 0.92 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF19-206 - 388 8.5e-10 38.6 44.2 7 9 0.00031 0.17 12.0 1.9 6 35 259 295 257 302 0.85 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF19-206 - 388 8.5e-10 38.6 44.2 8 9 0.00086 0.46 10.6 1.6 6 36 287 324 286 330 0.77 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF19-206 - 388 8.5e-10 38.6 44.2 9 9 0.036 19 5.4 0.5 6 29 315 345 314 347 0.66 Zinc ribbon domain zf_UBZ PF18439.1 32 ZNF19-206 - 388 2.8e-08 33.2 32.7 1 9 0.004 2.2 8.0 0.2 3 13 91 101 89 104 0.89 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF19-206 - 388 2.8e-08 33.2 32.7 2 9 0.019 10 5.8 0.1 3 13 119 129 117 138 0.80 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF19-206 - 388 2.8e-08 33.2 32.7 3 9 0.012 6.5 6.4 0.1 3 15 147 159 145 166 0.80 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF19-206 - 388 2.8e-08 33.2 32.7 4 9 0.029 16 5.2 0.1 3 16 175 189 173 194 0.81 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF19-206 - 388 2.8e-08 33.2 32.7 5 9 0.099 54 3.5 0.1 3 12 203 212 201 216 0.87 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF19-206 - 388 2.8e-08 33.2 32.7 6 9 0.024 13 5.5 0.3 3 15 231 243 229 250 0.75 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF19-206 - 388 2.8e-08 33.2 32.7 7 9 0.14 77 3.0 0.1 3 20 259 277 257 278 0.82 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF19-206 - 388 2.8e-08 33.2 32.7 8 9 0.06 32 4.2 0.1 3 16 287 301 285 306 0.80 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF19-206 - 388 2.8e-08 33.2 32.7 9 9 0.00095 0.52 10.0 0.2 2 19 314 332 313 334 0.75 Ubiquitin-Binding Zinc Finger zf-C2H2_6 PF13912.6 27 ZNF19-206 - 388 3.1e-08 33.4 59.7 1 9 0.0024 1.3 9.1 2.5 2 14 91 103 91 104 0.92 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF19-206 - 388 3.1e-08 33.4 59.7 2 9 0.00039 0.21 11.6 0.3 2 12 119 129 119 142 0.79 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF19-206 - 388 3.1e-08 33.4 59.7 3 9 0.035 19 5.4 0.1 2 20 147 165 147 170 0.75 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF19-206 - 388 3.1e-08 33.4 59.7 4 9 0.01 5.5 7.1 1.6 3 13 176 186 175 187 0.89 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF19-206 - 388 3.1e-08 33.4 59.7 5 9 0.0023 1.3 9.1 0.6 2 11 203 212 203 213 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF19-206 - 388 3.1e-08 33.4 59.7 6 9 0.0011 0.58 10.2 3.4 2 13 231 242 231 252 0.86 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF19-206 - 388 3.1e-08 33.4 59.7 7 9 0.12 64 3.7 1.1 2 12 259 269 259 284 0.74 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF19-206 - 388 3.1e-08 33.4 59.7 8 9 0.46 2.5e+02 1.8 0.2 4 24 289 309 287 312 0.80 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF19-206 - 388 3.1e-08 33.4 59.7 9 9 0.0014 0.74 9.9 0.6 2 21 315 334 314 339 0.83 C2H2-type zinc finger XPA_N PF01286.18 32 ZNF19-206 - 388 2.6e-07 30.6 33.2 1 9 0.0098 5.3 7.2 0.2 3 12 92 101 91 109 0.80 XPA protein N-terminal XPA_N PF01286.18 32 ZNF19-206 - 388 2.6e-07 30.6 33.2 2 9 0.021 12 6.1 0.1 3 12 120 129 118 137 0.86 XPA protein N-terminal XPA_N PF01286.18 32 ZNF19-206 - 388 2.6e-07 30.6 33.2 3 9 0.01 5.5 7.1 0.2 3 13 148 158 146 159 0.90 XPA protein N-terminal XPA_N PF01286.18 32 ZNF19-206 - 388 2.6e-07 30.6 33.2 4 9 0.094 51 4.0 0.3 4 14 177 187 175 188 0.92 XPA protein N-terminal XPA_N PF01286.18 32 ZNF19-206 - 388 2.6e-07 30.6 33.2 5 9 0.016 8.6 6.5 0.0 3 12 204 213 202 221 0.83 XPA protein N-terminal XPA_N PF01286.18 32 ZNF19-206 - 388 2.6e-07 30.6 33.2 6 9 0.011 5.9 7.0 0.1 3 12 232 241 230 249 0.79 XPA protein N-terminal XPA_N PF01286.18 32 ZNF19-206 - 388 2.6e-07 30.6 33.2 7 9 1.4 7.4e+02 0.3 0.1 4 11 261 268 258 269 0.67 XPA protein N-terminal XPA_N PF01286.18 32 ZNF19-206 - 388 2.6e-07 30.6 33.2 8 9 0.089 48 4.1 0.2 3 12 288 297 286 299 0.88 XPA protein N-terminal XPA_N PF01286.18 32 ZNF19-206 - 388 2.6e-07 30.6 33.2 9 9 0.03 16 5.6 0.1 3 11 316 324 315 326 0.82 XPA protein N-terminal zinc_ribbon_15 PF17032.5 86 ZNF19-206 - 388 6.5e-07 30.0 29.0 1 5 0.0026 1.4 9.7 4.4 29 79 110 160 61 162 0.84 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF19-206 - 388 6.5e-07 30.0 29.0 2 5 8.3e-05 0.045 14.5 0.6 30 81 139 190 132 194 0.86 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF19-206 - 388 6.5e-07 30.0 29.0 3 5 0.0019 1 10.1 0.8 31 75 168 212 161 217 0.83 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF19-206 - 388 6.5e-07 30.0 29.0 4 5 0.0032 1.7 9.4 1.2 30 77 223 270 218 277 0.85 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF19-206 - 388 6.5e-07 30.0 29.0 5 5 0.00013 0.073 13.8 1.3 32 78 281 327 276 330 0.88 zinc-ribbon family # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF19-206.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF19-206.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF19-206.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF19-206.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF19-206.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:01:07 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- KRAB PF01352.27 42 ZNF19-207 - 63 2.2e-22 78.4 0.0 1 1 2.9e-26 2.6e-22 78.2 0.0 1 42 13 54 13 54 0.98 KRAB box # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF19-207.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF19-207.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF19-207.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF19-207.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF19-207.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:01:07 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZNF19-208 - 446 1.1e-77 253.2 49.7 1 10 0.022 13 6.4 0.6 13 25 147 159 145 160 0.88 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF19-208 - 446 1.1e-77 253.2 49.7 2 10 5.4e-12 3.1e-09 36.8 0.7 2 25 164 187 163 187 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF19-208 - 446 1.1e-77 253.2 49.7 3 10 4e-11 2.3e-08 34.1 0.1 2 25 192 215 191 216 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF19-208 - 446 1.1e-77 253.2 49.7 4 10 7.6e-09 4.4e-06 26.9 0.1 1 26 219 244 219 244 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF19-208 - 446 1.1e-77 253.2 49.7 5 10 1.2e-10 6.9e-08 32.6 0.3 5 25 251 271 247 271 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF19-208 - 446 1.1e-77 253.2 49.7 6 10 1.7e-11 9.6e-09 35.3 0.4 2 25 276 299 276 300 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF19-208 - 446 1.1e-77 253.2 49.7 7 10 1.5e-10 8.6e-08 32.3 0.5 1 25 303 327 303 327 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF19-208 - 446 1.1e-77 253.2 49.7 8 10 2.9e-08 1.7e-05 25.0 0.2 2 25 332 355 331 356 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF19-208 - 446 1.1e-77 253.2 49.7 9 10 7.3e-09 4.2e-06 26.9 0.1 2 23 360 381 359 384 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF19-208 - 446 1.1e-77 253.2 49.7 10 10 1.6e-09 9.5e-07 29.0 0.6 1 26 387 412 387 412 0.91 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZNF19-208 - 446 1.2e-54 179.8 55.3 1 9 1.4e-07 8.1e-05 22.9 1.1 1 23 149 171 149 171 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF19-208 - 446 1.2e-54 179.8 55.3 2 9 2e-08 1.2e-05 25.5 0.2 1 23 177 199 177 199 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF19-208 - 446 1.2e-54 179.8 55.3 3 9 2.8e-09 1.6e-06 28.2 0.1 1 23 205 227 205 227 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF19-208 - 446 1.2e-54 179.8 55.3 4 9 2.1e-07 0.00012 22.3 0.6 1 23 233 255 233 255 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF19-208 - 446 1.2e-54 179.8 55.3 5 9 8.9e-07 0.00051 20.3 0.1 1 23 261 283 261 283 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF19-208 - 446 1.2e-54 179.8 55.3 6 9 9.7e-09 5.6e-06 26.5 1.7 1 23 289 311 289 311 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF19-208 - 446 1.2e-54 179.8 55.3 7 9 2.4e-06 0.0014 19.0 3.0 1 23 317 339 317 339 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF19-208 - 446 1.2e-54 179.8 55.3 8 9 4.6e-09 2.7e-06 27.5 0.1 1 23 345 367 345 367 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF19-208 - 446 1.2e-54 179.8 55.3 9 9 3.3e-07 0.00019 21.7 1.0 1 23 373 395 373 395 0.99 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZNF19-208 - 446 4.4e-33 111.1 50.8 1 9 5e-05 0.029 15.2 1.1 1 23 149 171 149 172 0.90 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF19-208 - 446 4.4e-33 111.1 50.8 2 9 9.4e-06 0.0054 17.5 0.2 1 23 177 199 177 200 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF19-208 - 446 4.4e-33 111.1 50.8 3 9 5.3e-06 0.0031 18.2 0.1 1 23 205 227 205 228 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF19-208 - 446 4.4e-33 111.1 50.8 4 9 4.9e-05 0.028 15.2 0.5 1 23 233 255 233 256 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF19-208 - 446 4.4e-33 111.1 50.8 5 9 1.4e-05 0.0082 16.9 0.1 1 23 261 283 261 284 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF19-208 - 446 4.4e-33 111.1 50.8 6 9 2.1e-05 0.012 16.4 1.2 1 23 289 311 289 312 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF19-208 - 446 4.4e-33 111.1 50.8 7 9 0.00021 0.12 13.2 2.2 1 23 317 339 317 340 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF19-208 - 446 4.4e-33 111.1 50.8 8 9 3.8e-05 0.022 15.6 0.2 3 23 347 367 345 368 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF19-208 - 446 4.4e-33 111.1 50.8 9 9 8.2e-05 0.047 14.5 0.7 1 23 373 395 373 396 0.95 C2H2-type zinc finger KRAB PF01352.27 42 ZNF19-208 - 446 5.8e-21 73.9 0.0 1 1 1.9e-23 1.1e-20 73.0 0.0 1 42 1 42 1 42 0.98 KRAB box zf-C2H2_11 PF16622.5 29 ZNF19-208 - 446 1.8e-15 56.4 36.2 1 9 0.43 2.5e+02 1.6 0.7 7 25 151 169 149 171 0.76 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF19-208 - 446 1.8e-15 56.4 36.2 2 9 0.00059 0.34 10.7 0.1 6 26 178 198 175 199 0.93 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF19-208 - 446 1.8e-15 56.4 36.2 3 9 0.00013 0.077 12.8 0.0 5 26 205 226 202 227 0.94 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF19-208 - 446 1.8e-15 56.4 36.2 4 9 0.0043 2.5 7.9 0.3 7 17 235 245 233 254 0.89 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF19-208 - 446 1.8e-15 56.4 36.2 5 9 0.063 37 4.2 0.0 6 26 262 282 259 283 0.88 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF19-208 - 446 1.8e-15 56.4 36.2 6 9 0.034 20 5.1 0.5 6 26 290 310 287 311 0.89 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF19-208 - 446 1.8e-15 56.4 36.2 7 9 0.031 18 5.2 0.7 7 26 319 338 316 339 0.93 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF19-208 - 446 1.8e-15 56.4 36.2 8 9 1.6e-06 0.00094 18.9 0.0 7 26 347 366 342 367 0.95 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF19-208 - 446 1.8e-15 56.4 36.2 9 9 0.0011 0.63 9.8 0.6 2 26 370 394 369 395 0.94 zinc-finger C2H2-type zf-C2H2_jaz PF12171.8 27 ZNF19-208 - 446 8.8e-13 48.2 24.4 1 9 0.03 17 5.8 0.1 2 12 149 159 148 159 0.90 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF19-208 - 446 8.8e-13 48.2 24.4 2 9 0.00066 0.38 11.1 0.0 2 22 177 197 176 197 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF19-208 - 446 8.8e-13 48.2 24.4 3 9 0.0044 2.6 8.5 0.1 4 22 207 225 204 225 0.91 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF19-208 - 446 8.8e-13 48.2 24.4 4 9 0.0068 3.9 7.9 0.1 2 22 233 253 232 253 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF19-208 - 446 8.8e-13 48.2 24.4 5 9 0.32 1.9e+02 2.5 0.0 2 21 261 280 260 281 0.80 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF19-208 - 446 8.8e-13 48.2 24.4 6 9 0.028 16 5.9 0.1 2 22 289 309 288 309 0.90 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF19-208 - 446 8.8e-13 48.2 24.4 7 9 4.3 2.5e+03 -1.1 0.2 2 8 317 323 316 337 0.72 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF19-208 - 446 8.8e-13 48.2 24.4 8 9 0.00024 0.14 12.5 0.0 2 22 345 365 344 365 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF19-208 - 446 8.8e-13 48.2 24.4 9 9 0.048 28 5.2 0.2 2 22 373 393 372 393 0.92 Zinc-finger double-stranded RNA-binding Zn-ribbon_8 PF09723.10 40 ZNF19-208 - 446 2.3e-09 37.2 44.2 1 8 0.00079 0.46 10.7 4.1 6 34 149 184 148 187 0.90 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF19-208 - 446 2.3e-09 37.2 44.2 2 8 0.00048 0.28 11.3 5.5 6 34 177 212 176 216 0.92 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF19-208 - 446 2.3e-09 37.2 44.2 3 8 0.00011 0.065 13.4 4.2 6 34 205 240 204 243 0.92 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF19-208 - 446 2.3e-09 37.2 44.2 4 8 7.3e-05 0.042 14.0 4.4 6 34 233 268 232 271 0.91 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF19-208 - 446 2.3e-09 37.2 44.2 5 8 8.2e-05 0.047 13.8 4.8 6 35 261 297 259 302 0.92 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF19-208 - 446 2.3e-09 37.2 44.2 6 8 4.5e-05 0.026 14.6 2.7 6 34 289 324 288 327 0.92 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF19-208 - 446 2.3e-09 37.2 44.2 7 8 0.0057 3.3 7.9 6.2 6 35 317 353 316 387 0.71 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF19-208 - 446 2.3e-09 37.2 44.2 8 8 0.04 23 5.2 0.5 6 27 373 400 372 405 0.66 Zinc ribbon domain zf-C2H2_6 PF13912.6 27 ZNF19-208 - 446 1e-07 31.8 59.4 1 9 0.0027 1.6 8.9 2.5 2 14 149 161 149 162 0.92 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF19-208 - 446 1e-07 31.8 59.4 2 9 0.00043 0.25 11.4 0.3 2 12 177 187 177 200 0.79 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF19-208 - 446 1e-07 31.8 59.4 3 9 0.039 22 5.2 0.1 2 19 205 222 205 228 0.75 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF19-208 - 446 1e-07 31.8 59.4 4 9 0.011 6.5 6.9 1.6 3 13 234 244 233 245 0.89 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF19-208 - 446 1e-07 31.8 59.4 5 9 0.0026 1.5 8.9 0.6 2 11 261 270 261 271 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF19-208 - 446 1e-07 31.8 59.4 6 9 0.00096 0.55 10.3 3.1 2 13 289 300 289 310 0.86 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF19-208 - 446 1e-07 31.8 59.4 7 9 0.13 75 3.5 1.1 2 12 317 327 317 342 0.74 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF19-208 - 446 1e-07 31.8 59.4 8 9 0.51 2.9e+02 1.6 0.2 4 24 347 367 345 370 0.80 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF19-208 - 446 1e-07 31.8 59.4 9 9 0.0015 0.88 9.6 0.6 2 21 373 392 372 397 0.83 C2H2-type zinc finger zf_UBZ PF18439.1 32 ZNF19-208 - 446 1.2e-07 31.2 32.7 1 9 0.0044 2.6 7.7 0.2 3 13 149 159 147 162 0.89 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF19-208 - 446 1.2e-07 31.2 32.7 2 9 0.02 12 5.6 0.1 3 13 177 187 175 196 0.80 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF19-208 - 446 1.2e-07 31.2 32.7 3 9 0.013 7.6 6.2 0.1 3 15 205 217 203 224 0.80 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF19-208 - 446 1.2e-07 31.2 32.7 4 9 0.032 19 5.0 0.1 3 16 233 247 231 252 0.81 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF19-208 - 446 1.2e-07 31.2 32.7 5 9 0.11 63 3.3 0.1 3 12 261 270 259 274 0.87 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF19-208 - 446 1.2e-07 31.2 32.7 6 9 0.026 15 5.3 0.3 3 15 289 301 287 308 0.75 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF19-208 - 446 1.2e-07 31.2 32.7 7 9 0.16 91 2.8 0.1 3 20 317 335 315 336 0.82 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF19-208 - 446 1.2e-07 31.2 32.7 8 9 0.066 38 4.0 0.1 3 16 345 359 343 364 0.80 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF19-208 - 446 1.2e-07 31.2 32.7 9 9 0.0011 0.61 9.7 0.2 2 19 372 390 371 392 0.75 Ubiquitin-Binding Zinc Finger XPA_N PF01286.18 32 ZNF19-208 - 446 9.3e-07 28.8 33.2 1 9 0.011 6.2 7.0 0.2 3 12 150 159 149 167 0.80 XPA protein N-terminal XPA_N PF01286.18 32 ZNF19-208 - 446 9.3e-07 28.8 33.2 2 9 0.023 13 5.9 0.1 3 12 178 187 176 195 0.86 XPA protein N-terminal XPA_N PF01286.18 32 ZNF19-208 - 446 9.3e-07 28.8 33.2 3 9 0.011 6.5 6.9 0.2 3 13 206 216 204 217 0.90 XPA protein N-terminal XPA_N PF01286.18 32 ZNF19-208 - 446 9.3e-07 28.8 33.2 4 9 0.1 60 3.8 0.3 4 14 235 245 233 246 0.92 XPA protein N-terminal XPA_N PF01286.18 32 ZNF19-208 - 446 9.3e-07 28.8 33.2 5 9 0.017 10 6.3 0.0 3 12 262 271 260 279 0.83 XPA protein N-terminal XPA_N PF01286.18 32 ZNF19-208 - 446 9.3e-07 28.8 33.2 6 9 0.012 7 6.8 0.1 3 12 290 299 288 307 0.79 XPA protein N-terminal XPA_N PF01286.18 32 ZNF19-208 - 446 9.3e-07 28.8 33.2 7 9 1.5 8.6e+02 0.1 0.1 4 11 319 326 316 327 0.67 XPA protein N-terminal XPA_N PF01286.18 32 ZNF19-208 - 446 9.3e-07 28.8 33.2 8 9 0.098 57 3.9 0.2 3 12 346 355 344 357 0.88 XPA protein N-terminal XPA_N PF01286.18 32 ZNF19-208 - 446 9.3e-07 28.8 33.2 9 9 0.033 19 5.4 0.1 3 11 374 382 373 384 0.82 XPA protein N-terminal # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF19-208.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF19-208.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF19-208.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF19-208.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF19-208.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:01:07 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF19-209.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF19-209.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF19-209.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF19-209.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF19-209.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:01:08 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF19-210.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF19-210.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF19-210.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF19-210.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF19-210.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:01:08 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF19-211.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF19-211.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF19-211.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF19-211.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF19-211.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:01:08 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF19-212.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF19-212.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF19-212.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF19-212.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF19-212.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:01:09 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF19-213.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF19-213.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF19-213.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF19-213.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF19-213.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:01:09 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZNF19-214 - 446 1.1e-77 253.2 49.7 1 10 0.022 13 6.4 0.6 13 25 147 159 145 160 0.88 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF19-214 - 446 1.1e-77 253.2 49.7 2 10 5.4e-12 3.1e-09 36.8 0.7 2 25 164 187 163 187 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF19-214 - 446 1.1e-77 253.2 49.7 3 10 4e-11 2.3e-08 34.1 0.1 2 25 192 215 191 216 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF19-214 - 446 1.1e-77 253.2 49.7 4 10 7.6e-09 4.4e-06 26.9 0.1 1 26 219 244 219 244 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF19-214 - 446 1.1e-77 253.2 49.7 5 10 1.2e-10 6.9e-08 32.6 0.3 5 25 251 271 247 271 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF19-214 - 446 1.1e-77 253.2 49.7 6 10 1.7e-11 9.6e-09 35.3 0.4 2 25 276 299 276 300 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF19-214 - 446 1.1e-77 253.2 49.7 7 10 1.5e-10 8.6e-08 32.3 0.5 1 25 303 327 303 327 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF19-214 - 446 1.1e-77 253.2 49.7 8 10 2.9e-08 1.7e-05 25.0 0.2 2 25 332 355 331 356 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF19-214 - 446 1.1e-77 253.2 49.7 9 10 7.3e-09 4.2e-06 26.9 0.1 2 23 360 381 359 384 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF19-214 - 446 1.1e-77 253.2 49.7 10 10 1.6e-09 9.5e-07 29.0 0.6 1 26 387 412 387 412 0.91 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZNF19-214 - 446 1.2e-54 179.8 55.3 1 9 1.4e-07 8.1e-05 22.9 1.1 1 23 149 171 149 171 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF19-214 - 446 1.2e-54 179.8 55.3 2 9 2e-08 1.2e-05 25.5 0.2 1 23 177 199 177 199 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF19-214 - 446 1.2e-54 179.8 55.3 3 9 2.8e-09 1.6e-06 28.2 0.1 1 23 205 227 205 227 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF19-214 - 446 1.2e-54 179.8 55.3 4 9 2.1e-07 0.00012 22.3 0.6 1 23 233 255 233 255 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF19-214 - 446 1.2e-54 179.8 55.3 5 9 8.9e-07 0.00051 20.3 0.1 1 23 261 283 261 283 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF19-214 - 446 1.2e-54 179.8 55.3 6 9 9.7e-09 5.6e-06 26.5 1.7 1 23 289 311 289 311 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF19-214 - 446 1.2e-54 179.8 55.3 7 9 2.4e-06 0.0014 19.0 3.0 1 23 317 339 317 339 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF19-214 - 446 1.2e-54 179.8 55.3 8 9 4.6e-09 2.7e-06 27.5 0.1 1 23 345 367 345 367 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF19-214 - 446 1.2e-54 179.8 55.3 9 9 3.3e-07 0.00019 21.7 1.0 1 23 373 395 373 395 0.99 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZNF19-214 - 446 4.4e-33 111.1 50.8 1 9 5e-05 0.029 15.2 1.1 1 23 149 171 149 172 0.90 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF19-214 - 446 4.4e-33 111.1 50.8 2 9 9.4e-06 0.0054 17.5 0.2 1 23 177 199 177 200 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF19-214 - 446 4.4e-33 111.1 50.8 3 9 5.3e-06 0.0031 18.2 0.1 1 23 205 227 205 228 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF19-214 - 446 4.4e-33 111.1 50.8 4 9 4.9e-05 0.028 15.2 0.5 1 23 233 255 233 256 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF19-214 - 446 4.4e-33 111.1 50.8 5 9 1.4e-05 0.0082 16.9 0.1 1 23 261 283 261 284 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF19-214 - 446 4.4e-33 111.1 50.8 6 9 2.1e-05 0.012 16.4 1.2 1 23 289 311 289 312 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF19-214 - 446 4.4e-33 111.1 50.8 7 9 0.00021 0.12 13.2 2.2 1 23 317 339 317 340 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF19-214 - 446 4.4e-33 111.1 50.8 8 9 3.8e-05 0.022 15.6 0.2 3 23 347 367 345 368 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF19-214 - 446 4.4e-33 111.1 50.8 9 9 8.2e-05 0.047 14.5 0.7 1 23 373 395 373 396 0.95 C2H2-type zinc finger KRAB PF01352.27 42 ZNF19-214 - 446 5.8e-21 73.9 0.0 1 1 1.9e-23 1.1e-20 73.0 0.0 1 42 1 42 1 42 0.98 KRAB box zf-C2H2_11 PF16622.5 29 ZNF19-214 - 446 1.8e-15 56.4 36.2 1 9 0.43 2.5e+02 1.6 0.7 7 25 151 169 149 171 0.76 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF19-214 - 446 1.8e-15 56.4 36.2 2 9 0.00059 0.34 10.7 0.1 6 26 178 198 175 199 0.93 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF19-214 - 446 1.8e-15 56.4 36.2 3 9 0.00013 0.077 12.8 0.0 5 26 205 226 202 227 0.94 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF19-214 - 446 1.8e-15 56.4 36.2 4 9 0.0043 2.5 7.9 0.3 7 17 235 245 233 254 0.89 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF19-214 - 446 1.8e-15 56.4 36.2 5 9 0.063 37 4.2 0.0 6 26 262 282 259 283 0.88 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF19-214 - 446 1.8e-15 56.4 36.2 6 9 0.034 20 5.1 0.5 6 26 290 310 287 311 0.89 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF19-214 - 446 1.8e-15 56.4 36.2 7 9 0.031 18 5.2 0.7 7 26 319 338 316 339 0.93 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF19-214 - 446 1.8e-15 56.4 36.2 8 9 1.6e-06 0.00094 18.9 0.0 7 26 347 366 342 367 0.95 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF19-214 - 446 1.8e-15 56.4 36.2 9 9 0.0011 0.63 9.8 0.6 2 26 370 394 369 395 0.94 zinc-finger C2H2-type zf-C2H2_jaz PF12171.8 27 ZNF19-214 - 446 8.8e-13 48.2 24.4 1 9 0.03 17 5.8 0.1 2 12 149 159 148 159 0.90 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF19-214 - 446 8.8e-13 48.2 24.4 2 9 0.00066 0.38 11.1 0.0 2 22 177 197 176 197 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF19-214 - 446 8.8e-13 48.2 24.4 3 9 0.0044 2.6 8.5 0.1 4 22 207 225 204 225 0.91 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF19-214 - 446 8.8e-13 48.2 24.4 4 9 0.0068 3.9 7.9 0.1 2 22 233 253 232 253 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF19-214 - 446 8.8e-13 48.2 24.4 5 9 0.32 1.9e+02 2.5 0.0 2 21 261 280 260 281 0.80 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF19-214 - 446 8.8e-13 48.2 24.4 6 9 0.028 16 5.9 0.1 2 22 289 309 288 309 0.90 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF19-214 - 446 8.8e-13 48.2 24.4 7 9 4.3 2.5e+03 -1.1 0.2 2 8 317 323 316 337 0.72 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF19-214 - 446 8.8e-13 48.2 24.4 8 9 0.00024 0.14 12.5 0.0 2 22 345 365 344 365 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF19-214 - 446 8.8e-13 48.2 24.4 9 9 0.048 28 5.2 0.2 2 22 373 393 372 393 0.92 Zinc-finger double-stranded RNA-binding Zn-ribbon_8 PF09723.10 40 ZNF19-214 - 446 2.3e-09 37.2 44.2 1 8 0.00079 0.46 10.7 4.1 6 34 149 184 148 187 0.90 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF19-214 - 446 2.3e-09 37.2 44.2 2 8 0.00048 0.28 11.3 5.5 6 34 177 212 176 216 0.92 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF19-214 - 446 2.3e-09 37.2 44.2 3 8 0.00011 0.065 13.4 4.2 6 34 205 240 204 243 0.92 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF19-214 - 446 2.3e-09 37.2 44.2 4 8 7.3e-05 0.042 14.0 4.4 6 34 233 268 232 271 0.91 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF19-214 - 446 2.3e-09 37.2 44.2 5 8 8.2e-05 0.047 13.8 4.8 6 35 261 297 259 302 0.92 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF19-214 - 446 2.3e-09 37.2 44.2 6 8 4.5e-05 0.026 14.6 2.7 6 34 289 324 288 327 0.92 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF19-214 - 446 2.3e-09 37.2 44.2 7 8 0.0057 3.3 7.9 6.2 6 35 317 353 316 387 0.71 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF19-214 - 446 2.3e-09 37.2 44.2 8 8 0.04 23 5.2 0.5 6 27 373 400 372 405 0.66 Zinc ribbon domain zf-C2H2_6 PF13912.6 27 ZNF19-214 - 446 1e-07 31.8 59.4 1 9 0.0027 1.6 8.9 2.5 2 14 149 161 149 162 0.92 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF19-214 - 446 1e-07 31.8 59.4 2 9 0.00043 0.25 11.4 0.3 2 12 177 187 177 200 0.79 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF19-214 - 446 1e-07 31.8 59.4 3 9 0.039 22 5.2 0.1 2 19 205 222 205 228 0.75 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF19-214 - 446 1e-07 31.8 59.4 4 9 0.011 6.5 6.9 1.6 3 13 234 244 233 245 0.89 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF19-214 - 446 1e-07 31.8 59.4 5 9 0.0026 1.5 8.9 0.6 2 11 261 270 261 271 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF19-214 - 446 1e-07 31.8 59.4 6 9 0.00096 0.55 10.3 3.1 2 13 289 300 289 310 0.86 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF19-214 - 446 1e-07 31.8 59.4 7 9 0.13 75 3.5 1.1 2 12 317 327 317 342 0.74 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF19-214 - 446 1e-07 31.8 59.4 8 9 0.51 2.9e+02 1.6 0.2 4 24 347 367 345 370 0.80 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF19-214 - 446 1e-07 31.8 59.4 9 9 0.0015 0.88 9.6 0.6 2 21 373 392 372 397 0.83 C2H2-type zinc finger zf_UBZ PF18439.1 32 ZNF19-214 - 446 1.2e-07 31.2 32.7 1 9 0.0044 2.6 7.7 0.2 3 13 149 159 147 162 0.89 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF19-214 - 446 1.2e-07 31.2 32.7 2 9 0.02 12 5.6 0.1 3 13 177 187 175 196 0.80 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF19-214 - 446 1.2e-07 31.2 32.7 3 9 0.013 7.6 6.2 0.1 3 15 205 217 203 224 0.80 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF19-214 - 446 1.2e-07 31.2 32.7 4 9 0.032 19 5.0 0.1 3 16 233 247 231 252 0.81 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF19-214 - 446 1.2e-07 31.2 32.7 5 9 0.11 63 3.3 0.1 3 12 261 270 259 274 0.87 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF19-214 - 446 1.2e-07 31.2 32.7 6 9 0.026 15 5.3 0.3 3 15 289 301 287 308 0.75 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF19-214 - 446 1.2e-07 31.2 32.7 7 9 0.16 91 2.8 0.1 3 20 317 335 315 336 0.82 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF19-214 - 446 1.2e-07 31.2 32.7 8 9 0.066 38 4.0 0.1 3 16 345 359 343 364 0.80 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF19-214 - 446 1.2e-07 31.2 32.7 9 9 0.0011 0.61 9.7 0.2 2 19 372 390 371 392 0.75 Ubiquitin-Binding Zinc Finger XPA_N PF01286.18 32 ZNF19-214 - 446 9.3e-07 28.8 33.2 1 9 0.011 6.2 7.0 0.2 3 12 150 159 149 167 0.80 XPA protein N-terminal XPA_N PF01286.18 32 ZNF19-214 - 446 9.3e-07 28.8 33.2 2 9 0.023 13 5.9 0.1 3 12 178 187 176 195 0.86 XPA protein N-terminal XPA_N PF01286.18 32 ZNF19-214 - 446 9.3e-07 28.8 33.2 3 9 0.011 6.5 6.9 0.2 3 13 206 216 204 217 0.90 XPA protein N-terminal XPA_N PF01286.18 32 ZNF19-214 - 446 9.3e-07 28.8 33.2 4 9 0.1 60 3.8 0.3 4 14 235 245 233 246 0.92 XPA protein N-terminal XPA_N PF01286.18 32 ZNF19-214 - 446 9.3e-07 28.8 33.2 5 9 0.017 10 6.3 0.0 3 12 262 271 260 279 0.83 XPA protein N-terminal XPA_N PF01286.18 32 ZNF19-214 - 446 9.3e-07 28.8 33.2 6 9 0.012 7 6.8 0.1 3 12 290 299 288 307 0.79 XPA protein N-terminal XPA_N PF01286.18 32 ZNF19-214 - 446 9.3e-07 28.8 33.2 7 9 1.5 8.6e+02 0.1 0.1 4 11 319 326 316 327 0.67 XPA protein N-terminal XPA_N PF01286.18 32 ZNF19-214 - 446 9.3e-07 28.8 33.2 8 9 0.098 57 3.9 0.2 3 12 346 355 344 357 0.88 XPA protein N-terminal XPA_N PF01286.18 32 ZNF19-214 - 446 9.3e-07 28.8 33.2 9 9 0.033 19 5.4 0.1 3 11 374 382 373 384 0.82 XPA protein N-terminal # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF19-214.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF19-214.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF19-214.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF19-214.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF19-214.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:01:10 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF19-215.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF19-215.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF19-215.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF19-215.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF19-215.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:01:10 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- SCAN PF02023.17 90 ZNF197-201 - 173 4.1e-41 138.7 0.7 1 1 3.3e-45 6e-41 138.2 0.7 2 88 39 125 38 127 0.97 SCAN domain # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF197-201.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF197-201.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF197-201.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF197-201.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF197-201.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:01:10 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZNF197-202 - 1029 3.4e-154 495.1 141.5 1 23 0.073 72 4.1 5.3 11 25 366 380 364 381 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF197-202 - 1029 3.4e-154 495.1 141.5 2 23 1.1e-09 1.1e-06 28.7 2.2 1 24 384 407 384 409 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF197-202 - 1029 3.4e-154 495.1 141.5 3 23 2.9e-10 2.9e-07 30.6 0.3 2 25 413 436 412 437 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF197-202 - 1029 3.4e-154 495.1 141.5 4 23 4.6e-10 4.5e-07 30.0 1.5 2 24 441 463 440 465 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF197-202 - 1029 3.4e-154 495.1 141.5 5 23 5.4e-09 5.4e-06 26.6 0.1 5 25 472 492 468 493 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF197-202 - 1029 3.4e-154 495.1 141.5 6 23 9.8e-08 9.8e-05 22.6 0.6 2 24 497 519 496 520 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF197-202 - 1029 3.4e-154 495.1 141.5 7 23 2.1e-10 2.1e-07 31.0 0.1 2 25 525 548 524 549 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF197-202 - 1029 3.4e-154 495.1 141.5 8 23 7.5e-08 7.5e-05 23.0 0.3 2 24 553 575 552 577 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF197-202 - 1029 3.4e-154 495.1 141.5 9 23 2.1e-05 0.021 15.3 0.8 2 25 581 604 580 605 0.89 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF197-202 - 1029 3.4e-154 495.1 141.5 10 23 2e-08 2e-05 24.8 1.7 4 25 611 632 608 633 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF197-202 - 1029 3.4e-154 495.1 141.5 11 23 4.4e-09 4.4e-06 26.9 0.3 4 24 639 659 636 660 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF197-202 - 1029 3.4e-154 495.1 141.5 12 23 2.8e-09 2.8e-06 27.5 0.1 2 25 665 688 664 689 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF197-202 - 1029 3.4e-154 495.1 141.5 13 23 1.1e-09 1.1e-06 28.8 0.2 1 24 692 715 692 716 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF197-202 - 1029 3.4e-154 495.1 141.5 14 23 2e-08 2e-05 24.8 0.8 2 25 721 744 720 745 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF197-202 - 1029 3.4e-154 495.1 141.5 15 23 2.4e-10 2.3e-07 30.9 0.1 3 26 750 773 748 773 0.90 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF197-202 - 1029 3.4e-154 495.1 141.5 16 23 1.5e-09 1.4e-06 28.4 0.8 1 24 776 799 776 800 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF197-202 - 1029 3.4e-154 495.1 141.5 17 23 1.9e-07 0.00019 21.7 0.3 5 25 808 828 804 829 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF197-202 - 1029 3.4e-154 495.1 141.5 18 23 6.9e-11 6.9e-08 32.6 0.1 1 25 832 856 832 857 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF197-202 - 1029 3.4e-154 495.1 141.5 19 23 1.6e-07 0.00016 22.0 0.5 1 23 860 882 860 885 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF197-202 - 1029 3.4e-154 495.1 141.5 20 23 4.9e-11 4.9e-08 33.0 0.2 1 25 888 912 888 913 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF197-202 - 1029 3.4e-154 495.1 141.5 21 23 2.1e-12 2e-09 37.4 0.7 1 26 916 941 916 941 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF197-202 - 1029 3.4e-154 495.1 141.5 22 23 2.7e-08 2.6e-05 24.4 0.1 1 25 944 968 944 969 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF197-202 - 1029 3.4e-154 495.1 141.5 23 23 0.00048 0.48 11.0 0.2 1 24 972 995 972 997 0.86 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZNF197-202 - 1029 9.3e-114 366.0 165.7 1 23 0.0047 4.6 7.9 8.0 1 23 370 392 370 392 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF197-202 - 1029 9.3e-114 366.0 165.7 2 23 8.4e-07 0.00084 19.7 1.8 1 23 398 420 398 420 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF197-202 - 1029 9.3e-114 366.0 165.7 3 23 2e-08 2e-05 24.8 0.4 1 23 426 448 426 448 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF197-202 - 1029 9.3e-114 366.0 165.7 4 23 9.4e-08 9.4e-05 22.7 1.8 1 23 454 476 454 476 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF197-202 - 1029 9.3e-114 366.0 165.7 5 23 1.5e-08 1.5e-05 25.2 0.3 1 23 482 504 482 504 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF197-202 - 1029 9.3e-114 366.0 165.7 6 23 5.5e-06 0.0055 17.1 0.9 1 23 510 532 510 532 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF197-202 - 1029 9.3e-114 366.0 165.7 7 23 1.3e-07 0.00013 22.3 0.5 1 23 538 560 538 560 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF197-202 - 1029 9.3e-114 366.0 165.7 8 23 2.9e-08 2.9e-05 24.3 0.8 1 23 566 588 566 588 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF197-202 - 1029 9.3e-114 366.0 165.7 9 23 1.2e-06 0.0012 19.2 1.6 3 23 596 616 594 616 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF197-202 - 1029 9.3e-114 366.0 165.7 10 23 5.2e-08 5.2e-05 23.5 0.8 1 23 622 644 622 644 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF197-202 - 1029 9.3e-114 366.0 165.7 11 23 2.8e-06 0.0028 18.0 0.4 1 23 650 672 650 672 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF197-202 - 1029 9.3e-114 366.0 165.7 12 23 1.4e-07 0.00014 22.1 0.2 1 23 678 700 678 700 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF197-202 - 1029 9.3e-114 366.0 165.7 13 23 2.7e-06 0.0027 18.1 1.1 1 23 706 728 706 728 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF197-202 - 1029 9.3e-114 366.0 165.7 14 23 6.1e-09 6.1e-06 26.4 0.5 1 23 734 756 734 756 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF197-202 - 1029 9.3e-114 366.0 165.7 15 23 2.1e-07 0.00021 21.5 0.3 1 23 762 784 762 784 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF197-202 - 1029 9.3e-114 366.0 165.7 16 23 4.1e-06 0.0041 17.5 0.7 1 23 790 812 790 812 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF197-202 - 1029 9.3e-114 366.0 165.7 17 23 3e-10 3e-07 30.5 0.5 1 23 818 840 818 840 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF197-202 - 1029 9.3e-114 366.0 165.7 18 23 2.5e-07 0.00025 21.3 0.2 1 23 846 868 846 868 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF197-202 - 1029 9.3e-114 366.0 165.7 19 23 5.7e-07 0.00057 20.2 1.7 1 23 874 896 874 896 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF197-202 - 1029 9.3e-114 366.0 165.7 20 23 3.8e-09 3.7e-06 27.1 0.8 1 23 902 924 902 924 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF197-202 - 1029 9.3e-114 366.0 165.7 21 23 2.2e-07 0.00022 21.5 1.3 1 23 930 952 930 952 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF197-202 - 1029 9.3e-114 366.0 165.7 22 23 9.5e-08 9.5e-05 22.7 0.8 3 23 960 980 958 980 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF197-202 - 1029 9.3e-114 366.0 165.7 23 23 3 3e+03 -1.0 0.1 5 16 987 1001 985 1003 0.83 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZNF197-202 - 1029 4.5e-64 207.5 152.5 1 22 0.0018 1.8 9.6 5.7 1 23 370 392 370 393 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF197-202 - 1029 4.5e-64 207.5 152.5 2 22 7.2e-05 0.071 14.0 1.5 1 23 398 420 398 421 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF197-202 - 1029 4.5e-64 207.5 152.5 3 22 1.9e-05 0.019 15.8 0.4 1 23 426 448 426 449 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF197-202 - 1029 4.5e-64 207.5 152.5 4 22 4.1e-05 0.04 14.7 1.3 1 23 454 476 454 477 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF197-202 - 1029 4.5e-64 207.5 152.5 5 22 2.1e-05 0.021 15.6 0.4 1 23 482 504 482 505 0.89 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF197-202 - 1029 4.5e-64 207.5 152.5 6 22 0.0032 3.2 8.8 0.8 1 23 510 532 510 533 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF197-202 - 1029 4.5e-64 207.5 152.5 7 22 3.8e-05 0.038 14.8 0.3 1 23 538 560 538 561 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF197-202 - 1029 4.5e-64 207.5 152.5 8 22 3.1e-05 0.031 15.1 0.9 1 23 566 588 566 589 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF197-202 - 1029 4.5e-64 207.5 152.5 9 22 2.3e-05 0.023 15.5 1.1 1 23 594 616 594 617 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF197-202 - 1029 4.5e-64 207.5 152.5 10 22 7.3e-05 0.073 14.0 0.6 1 23 622 644 622 645 0.89 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF197-202 - 1029 4.5e-64 207.5 152.5 11 22 0.00071 0.71 10.9 0.5 1 23 650 672 650 673 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF197-202 - 1029 4.5e-64 207.5 152.5 12 22 1.6e-05 0.016 16.0 0.1 1 23 678 700 678 701 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF197-202 - 1029 4.5e-64 207.5 152.5 13 22 0.00023 0.23 12.4 1.0 1 23 706 728 706 729 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF197-202 - 1029 4.5e-64 207.5 152.5 14 22 1.1e-05 0.01 16.6 0.4 1 23 734 756 734 757 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF197-202 - 1029 4.5e-64 207.5 152.5 15 22 1.2e-05 0.012 16.4 0.3 1 23 762 784 762 785 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF197-202 - 1029 4.5e-64 207.5 152.5 16 22 0.00028 0.28 12.1 0.7 1 23 790 812 790 813 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF197-202 - 1029 4.5e-64 207.5 152.5 17 22 1.3e-05 0.013 16.2 0.3 1 23 818 840 818 841 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF197-202 - 1029 4.5e-64 207.5 152.5 18 22 0.00013 0.13 13.2 0.2 1 23 846 868 846 869 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF197-202 - 1029 4.5e-64 207.5 152.5 19 22 0.00031 0.31 12.0 1.3 1 23 874 896 874 897 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF197-202 - 1029 4.5e-64 207.5 152.5 20 22 1e-05 0.01 16.6 0.5 1 23 902 924 902 925 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF197-202 - 1029 4.5e-64 207.5 152.5 21 22 1.8e-05 0.018 15.8 0.8 1 23 930 952 930 953 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF197-202 - 1029 4.5e-64 207.5 152.5 22 22 0.00031 0.31 12.0 0.6 2 23 959 980 958 981 0.93 C2H2-type zinc finger SCAN PF02023.17 90 ZNF197-202 - 1029 5.2e-40 135.2 0.7 1 1 1.4e-42 1.4e-39 133.8 0.7 2 88 39 125 38 127 0.97 SCAN domain zf-C2H2_6 PF13912.6 27 ZNF197-202 - 1029 4e-37 125.5 146.1 1 22 0.041 41 4.3 3.8 2 24 370 392 369 395 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF197-202 - 1029 4e-37 125.5 146.1 2 22 0.00036 0.36 10.9 2.0 2 25 398 421 398 423 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF197-202 - 1029 4e-37 125.5 146.1 3 22 0.0037 3.6 7.7 0.8 2 12 426 436 426 437 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF197-202 - 1029 4e-37 125.5 146.1 4 22 0.00051 0.51 10.4 2.0 2 25 454 477 454 479 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF197-202 - 1029 4e-37 125.5 146.1 5 22 0.00049 0.49 10.5 0.3 2 12 482 492 482 505 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF197-202 - 1029 4e-37 125.5 146.1 6 22 0.18 1.8e+02 2.3 0.4 2 11 510 519 510 533 0.86 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF197-202 - 1029 4e-37 125.5 146.1 7 22 0.00018 0.18 11.9 0.3 2 20 538 556 538 563 0.74 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF197-202 - 1029 4e-37 125.5 146.1 8 22 0.00036 0.36 10.9 0.6 2 17 566 581 566 590 0.79 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF197-202 - 1029 4e-37 125.5 146.1 9 22 0.0039 3.9 7.6 1.3 2 26 594 618 593 619 0.90 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF197-202 - 1029 4e-37 125.5 146.1 10 22 0.0032 3.1 7.9 0.7 2 11 622 631 622 633 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF197-202 - 1029 4e-37 125.5 146.1 11 22 0.00088 0.87 9.7 0.4 2 11 650 659 650 672 0.89 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF197-202 - 1029 4e-37 125.5 146.1 12 22 5.5e-05 0.054 13.5 0.1 2 24 678 700 677 703 0.88 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF197-202 - 1029 4e-37 125.5 146.1 13 22 0.0039 3.9 7.6 0.7 2 16 706 720 706 731 0.75 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF197-202 - 1029 4e-37 125.5 146.1 14 22 0.0091 9 6.4 0.3 1 24 733 756 733 759 0.87 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF197-202 - 1029 4e-37 125.5 146.1 15 22 1.8e-07 0.00018 21.4 0.2 2 25 762 785 762 787 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF197-202 - 1029 4e-37 125.5 146.1 16 22 0.00052 0.52 10.4 0.9 2 24 790 812 790 815 0.89 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF197-202 - 1029 4e-37 125.5 146.1 17 22 9e-05 0.09 12.8 0.3 2 24 818 840 817 843 0.90 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF197-202 - 1029 4e-37 125.5 146.1 18 22 5.7e-05 0.056 13.5 0.3 2 24 846 868 846 871 0.90 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF197-202 - 1029 4e-37 125.5 146.1 19 22 0.00042 0.42 10.7 0.4 2 24 874 896 873 899 0.89 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF197-202 - 1029 4e-37 125.5 146.1 20 22 0.0018 1.8 8.7 0.5 2 22 902 922 902 926 0.81 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF197-202 - 1029 4e-37 125.5 146.1 21 22 3.5e-05 0.035 14.1 0.6 2 24 930 952 930 955 0.92 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF197-202 - 1029 4e-37 125.5 146.1 22 22 0.0035 3.5 7.7 0.3 2 24 958 980 958 983 0.88 C2H2-type zinc finger Zn-ribbon_8 PF09723.10 40 ZNF197-202 - 1029 1.7e-21 76.0 118.0 1 17 0.0018 1.8 8.8 3.3 6 34 370 405 369 411 0.81 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF197-202 - 1029 1.7e-21 76.0 118.0 2 17 9.8e-06 0.0098 16.0 2.1 6 34 426 461 425 466 0.92 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF197-202 - 1029 1.7e-21 76.0 118.0 3 17 8.4e-05 0.084 13.0 2.8 6 34 482 517 481 520 0.90 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF197-202 - 1029 1.7e-21 76.0 118.0 4 17 0.0015 1.5 9.0 4.7 6 35 510 546 508 550 0.88 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF197-202 - 1029 1.7e-21 76.0 118.0 5 17 0.00025 0.25 11.5 4.8 6 34 538 573 537 574 0.88 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF197-202 - 1029 1.7e-21 76.0 118.0 6 17 2.4e-05 0.024 14.8 1.1 6 34 566 601 565 607 0.91 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF197-202 - 1029 1.7e-21 76.0 118.0 7 17 0.00047 0.47 10.6 3.1 6 36 594 631 593 634 0.79 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF197-202 - 1029 1.7e-21 76.0 118.0 8 17 0.00048 0.48 10.6 5.3 6 34 622 657 621 659 0.91 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF197-202 - 1029 1.7e-21 76.0 118.0 9 17 0.0011 1.1 9.4 4.5 6 34 650 685 649 686 0.86 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF197-202 - 1029 1.7e-21 76.0 118.0 10 17 0.006 6 7.1 6.1 6 34 678 713 677 715 0.73 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF197-202 - 1029 1.7e-21 76.0 118.0 11 17 0.00054 0.54 10.4 5.8 6 34 706 741 705 744 0.86 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF197-202 - 1029 1.7e-21 76.0 118.0 12 17 9.2e-05 0.092 12.9 3.6 6 34 734 769 732 773 0.89 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF197-202 - 1029 1.7e-21 76.0 118.0 13 17 0.064 63 3.8 8.2 6 34 762 797 761 803 0.85 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF197-202 - 1029 1.7e-21 76.0 118.0 14 17 1.8e-06 0.0018 18.3 1.6 6 34 818 853 817 859 0.91 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF197-202 - 1029 1.7e-21 76.0 118.0 15 17 0.00043 0.43 10.7 2.0 6 34 846 881 845 887 0.91 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF197-202 - 1029 1.7e-21 76.0 118.0 16 17 6.5e-06 0.0065 16.6 2.2 6 34 902 937 901 944 0.90 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF197-202 - 1029 1.7e-21 76.0 118.0 17 17 0.021 21 5.4 1.9 6 29 958 988 957 994 0.83 Zinc ribbon domain KRAB PF01352.27 42 ZNF197-202 - 1029 6.6e-21 73.7 0.1 1 1 1.6e-23 1.6e-20 72.5 0.1 1 42 216 257 216 257 0.98 KRAB box zf-C2H2_jaz PF12171.8 27 ZNF197-202 - 1029 2e-09 37.5 108.1 1 22 0.41 4.1e+02 1.4 5.8 2 21 370 389 370 390 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF197-202 - 1029 2e-09 37.5 108.1 2 22 0.0007 0.69 10.3 0.2 2 24 398 420 397 421 0.91 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF197-202 - 1029 2e-09 37.5 108.1 3 22 0.045 45 4.5 0.2 2 22 426 446 425 446 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF197-202 - 1029 2e-09 37.5 108.1 4 22 0.015 15 6.1 0.0 2 21 454 473 453 474 0.85 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF197-202 - 1029 2e-09 37.5 108.1 5 22 0.21 2.1e+02 2.4 0.3 2 21 482 501 481 502 0.81 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF197-202 - 1029 2e-09 37.5 108.1 6 22 3.8 3.8e+03 -1.6 0.6 2 20 510 528 509 530 0.74 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF197-202 - 1029 2e-09 37.5 108.1 7 22 0.086 86 3.6 0.2 2 12 538 548 537 558 0.83 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF197-202 - 1029 2e-09 37.5 108.1 8 22 0.00023 0.22 11.8 0.1 2 22 566 586 565 586 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF197-202 - 1029 2e-09 37.5 108.1 9 22 0.025 25 5.3 0.5 4 22 596 614 594 614 0.91 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF197-202 - 1029 2e-09 37.5 108.1 10 22 0.72 7.2e+02 0.7 0.3 2 11 622 631 621 636 0.90 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF197-202 - 1029 2e-09 37.5 108.1 11 22 0.15 1.5e+02 2.8 0.1 2 21 650 669 649 670 0.80 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF197-202 - 1029 2e-09 37.5 108.1 12 22 0.0016 1.6 9.1 0.0 2 22 678 698 677 698 0.95 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF197-202 - 1029 2e-09 37.5 108.1 13 22 0.0004 0.4 11.0 0.1 2 22 706 726 705 726 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF197-202 - 1029 2e-09 37.5 108.1 14 22 0.24 2.4e+02 2.2 0.1 2 21 734 753 733 754 0.86 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF197-202 - 1029 2e-09 37.5 108.1 15 22 0.00094 0.94 9.8 0.0 2 22 762 782 761 782 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF197-202 - 1029 2e-09 37.5 108.1 16 22 0.99 9.9e+02 0.2 0.4 2 21 790 809 789 810 0.77 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF197-202 - 1029 2e-09 37.5 108.1 17 22 0.49 4.9e+02 1.2 0.3 2 21 818 837 817 838 0.87 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF197-202 - 1029 2e-09 37.5 108.1 18 22 0.34 3.4e+02 1.7 0.1 2 21 846 865 845 866 0.81 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF197-202 - 1029 2e-09 37.5 108.1 19 22 0.012 12 6.3 0.1 2 22 874 894 873 894 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF197-202 - 1029 2e-09 37.5 108.1 20 22 0.036 36 4.8 0.4 2 22 902 922 901 922 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF197-202 - 1029 2e-09 37.5 108.1 21 22 0.0094 9.3 6.7 0.1 2 22 930 950 929 950 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF197-202 - 1029 2e-09 37.5 108.1 22 22 0.92 9.1e+02 0.3 0.5 4 22 960 978 958 978 0.90 Zinc-finger double-stranded RNA-binding zf_UBZ PF18439.1 32 ZNF197-202 - 1029 5e-09 35.6 90.4 1 22 4.6 4.6e+03 -2.7 1.6 3 12 370 379 368 383 0.85 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF197-202 - 1029 5e-09 35.6 90.4 2 22 0.17 1.7e+02 1.9 0.1 3 13 398 408 396 417 0.79 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF197-202 - 1029 5e-09 35.6 90.4 3 22 0.011 11 5.8 0.1 3 15 426 438 424 445 0.82 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF197-202 - 1029 5e-09 35.6 90.4 4 22 0.06 60 3.3 0.3 3 12 454 463 452 467 0.83 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF197-202 - 1029 5e-09 35.6 90.4 5 22 0.013 13 5.5 0.1 3 15 482 494 480 500 0.88 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF197-202 - 1029 5e-09 35.6 90.4 6 22 0.24 2.4e+02 1.4 0.2 3 12 510 519 508 525 0.84 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF197-202 - 1029 5e-09 35.6 90.4 7 22 0.002 2 8.1 0.1 3 15 538 550 536 557 0.85 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF197-202 - 1029 5e-09 35.6 90.4 8 22 0.011 10 5.8 0.1 3 15 566 578 564 585 0.79 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF197-202 - 1029 5e-09 35.6 90.4 9 22 0.046 46 3.7 0.1 2 14 593 605 592 612 0.85 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF197-202 - 1029 5e-09 35.6 90.4 10 22 0.025 25 4.6 0.1 3 15 622 634 620 637 0.83 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF197-202 - 1029 5e-09 35.6 90.4 11 22 0.063 63 3.3 0.1 3 13 650 660 648 672 0.83 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF197-202 - 1029 5e-09 35.6 90.4 12 22 0.033 33 4.2 0.1 2 12 677 687 676 697 0.80 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF197-202 - 1029 5e-09 35.6 90.4 13 22 0.017 17 5.1 0.2 3 16 706 720 704 725 0.79 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF197-202 - 1029 5e-09 35.6 90.4 14 22 0.01 10 5.8 0.0 3 13 734 744 732 752 0.85 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF197-202 - 1029 5e-09 35.6 90.4 15 22 0.002 2 8.1 0.1 3 20 762 780 760 781 0.92 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF197-202 - 1029 5e-09 35.6 90.4 16 22 0.017 17 5.1 0.5 3 12 790 799 788 808 0.86 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF197-202 - 1029 5e-09 35.6 90.4 17 22 0.019 19 4.9 0.1 2 13 817 828 816 837 0.84 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF197-202 - 1029 5e-09 35.6 90.4 18 22 0.0076 7.5 6.2 0.1 3 21 846 865 844 865 0.86 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF197-202 - 1029 5e-09 35.6 90.4 19 22 1.6 1.6e+03 -1.2 0.1 2 15 873 886 872 893 0.77 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF197-202 - 1029 5e-09 35.6 90.4 20 22 0.032 31 4.3 0.1 3 15 902 914 900 921 0.84 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF197-202 - 1029 5e-09 35.6 90.4 21 22 0.04 40 3.9 0.1 3 13 930 940 928 948 0.87 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF197-202 - 1029 5e-09 35.6 90.4 22 22 2.2 2.2e+03 -1.7 0.1 3 12 958 967 957 976 0.83 Ubiquitin-Binding Zinc Finger zinc_ribbon_15 PF17032.5 86 ZNF197-202 - 1029 6.8e-09 36.4 99.9 1 12 0.037 37 5.2 3.9 34 74 366 406 360 413 0.85 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF197-202 - 1029 6.8e-09 36.4 99.9 2 12 0.006 6 7.7 1.7 35 73 423 461 411 468 0.85 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF197-202 - 1029 6.8e-09 36.4 99.9 3 12 0.0016 1.6 9.6 1.5 32 74 477 518 463 524 0.83 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF197-202 - 1029 6.8e-09 36.4 99.9 4 12 0.0018 1.8 9.4 1.3 31 75 531 575 524 580 0.85 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF197-202 - 1029 6.8e-09 36.4 99.9 5 12 0.0053 5.3 7.9 7.0 31 78 587 634 584 664 0.85 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF197-202 - 1029 6.8e-09 36.4 99.9 6 12 0.007 7 7.5 0.4 34 77 646 689 636 696 0.83 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF197-202 - 1029 6.8e-09 36.4 99.9 7 12 0.00078 0.78 10.5 3.3 30 78 670 718 651 724 0.84 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF197-202 - 1029 6.8e-09 36.4 99.9 8 12 0.001 1 10.1 1.1 29 78 725 774 716 780 0.85 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF197-202 - 1029 6.8e-09 36.4 99.9 9 12 0.066 66 4.4 6.1 39 73 763 797 754 833 0.53 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF197-202 - 1029 6.8e-09 36.4 99.9 10 12 0.00052 0.52 11.1 1.1 30 78 838 886 833 892 0.85 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF197-202 - 1029 6.8e-09 36.4 99.9 11 12 0.0011 1.1 10.1 3.1 31 78 895 942 889 948 0.87 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF197-202 - 1029 6.8e-09 36.4 99.9 12 12 0.36 3.6e+02 2.0 2.0 32 69 952 989 946 1000 0.67 zinc-ribbon family C1_4 PF07975.12 55 ZNF197-202 - 1029 6.3e-07 29.5 103.8 1 19 7.7 7.6e+03 -2.8 6.1 22 35 366 379 350 405 0.73 TFIIH C1-like domain C1_4 PF07975.12 55 ZNF197-202 - 1029 6.3e-07 29.5 103.8 2 19 0.1 1e+02 3.3 1.2 2 48 400 448 399 451 0.67 TFIIH C1-like domain C1_4 PF07975.12 55 ZNF197-202 - 1029 6.3e-07 29.5 103.8 3 19 0.084 83 3.5 2.1 2 36 428 464 427 478 0.74 TFIIH C1-like domain C1_4 PF07975.12 55 ZNF197-202 - 1029 6.3e-07 29.5 103.8 4 19 0.076 75 3.7 0.2 24 49 480 505 465 508 0.86 TFIIH C1-like domain C1_4 PF07975.12 55 ZNF197-202 - 1029 6.3e-07 29.5 103.8 5 19 0.0013 1.3 9.3 2.4 2 49 484 533 483 535 0.82 TFIIH C1-like domain C1_4 PF07975.12 55 ZNF197-202 - 1029 6.3e-07 29.5 103.8 6 19 0.013 13 6.1 2.5 2 49 512 561 512 564 0.78 TFIIH C1-like domain C1_4 PF07975.12 55 ZNF197-202 - 1029 6.3e-07 29.5 103.8 7 19 0.039 39 4.6 4.3 2 49 540 589 539 598 0.78 TFIIH C1-like domain C1_4 PF07975.12 55 ZNF197-202 - 1029 6.3e-07 29.5 103.8 8 19 0.37 3.6e+02 1.5 3.4 2 38 568 606 567 619 0.73 TFIIH C1-like domain C1_4 PF07975.12 55 ZNF197-202 - 1029 6.3e-07 29.5 103.8 9 19 0.00086 0.85 9.9 2.8 2 49 596 645 593 648 0.78 TFIIH C1-like domain C1_4 PF07975.12 55 ZNF197-202 - 1029 6.3e-07 29.5 103.8 10 19 0.029 29 5.0 0.1 25 49 649 673 646 676 0.90 TFIIH C1-like domain C1_4 PF07975.12 55 ZNF197-202 - 1029 6.3e-07 29.5 103.8 11 19 0.0029 2.9 8.2 0.2 23 49 675 701 663 703 0.89 TFIIH C1-like domain C1_4 PF07975.12 55 ZNF197-202 - 1029 6.3e-07 29.5 103.8 12 19 0.00015 0.15 12.3 1.5 1 49 707 757 707 759 0.88 TFIIH C1-like domain C1_4 PF07975.12 55 ZNF197-202 - 1029 6.3e-07 29.5 103.8 13 19 0.011 11 6.4 2.2 1 48 763 812 763 814 0.80 TFIIH C1-like domain C1_4 PF07975.12 55 ZNF197-202 - 1029 6.3e-07 29.5 103.8 14 19 0.017 17 5.7 0.3 20 49 812 841 802 844 0.85 TFIIH C1-like domain C1_4 PF07975.12 55 ZNF197-202 - 1029 6.3e-07 29.5 103.8 15 19 0.14 1.4e+02 2.9 1.6 2 48 820 868 819 872 0.73 TFIIH C1-like domain C1_4 PF07975.12 55 ZNF197-202 - 1029 6.3e-07 29.5 103.8 16 19 0.025 25 5.2 1.4 2 49 848 897 847 899 0.82 TFIIH C1-like domain C1_4 PF07975.12 55 ZNF197-202 - 1029 6.3e-07 29.5 103.8 17 19 0.00029 0.29 11.4 2.1 1 49 875 925 875 927 0.89 TFIIH C1-like domain C1_4 PF07975.12 55 ZNF197-202 - 1029 6.3e-07 29.5 103.8 18 19 0.004 4 7.8 3.6 1 48 903 952 903 960 0.80 TFIIH C1-like domain C1_4 PF07975.12 55 ZNF197-202 - 1029 6.3e-07 29.5 103.8 19 19 0.029 29 5.0 3.7 1 49 931 981 931 988 0.84 TFIIH C1-like domain # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF197-202.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF197-202.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF197-202.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF197-202.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF197-202.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:01:11 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- SCAN PF02023.17 90 ZNF197-203 - 267 9.7e-41 137.5 0.7 1 1 1.8e-44 1.6e-40 136.8 0.7 2 88 39 125 38 127 0.97 SCAN domain KRAB PF01352.27 42 ZNF197-203 - 267 1.1e-21 76.1 0.1 1 1 3.1e-25 2.8e-21 74.9 0.1 1 42 216 257 216 257 0.98 KRAB box # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF197-203.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF197-203.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF197-203.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF197-203.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF197-203.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:01:11 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- SCAN PF02023.17 90 ZNF197-204 - 267 9.7e-41 137.5 0.7 1 1 1.8e-44 1.6e-40 136.8 0.7 2 88 39 125 38 127 0.97 SCAN domain KRAB PF01352.27 42 ZNF197-204 - 267 1.1e-21 76.1 0.1 1 1 3.1e-25 2.8e-21 74.9 0.1 1 42 216 257 216 257 0.98 KRAB box # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF197-204.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF197-204.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF197-204.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF197-204.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF197-204.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:01:12 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZNF197-205 - 1029 3.4e-154 495.1 141.5 1 23 0.073 72 4.1 5.3 11 25 366 380 364 381 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF197-205 - 1029 3.4e-154 495.1 141.5 2 23 1.1e-09 1.1e-06 28.7 2.2 1 24 384 407 384 409 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF197-205 - 1029 3.4e-154 495.1 141.5 3 23 2.9e-10 2.9e-07 30.6 0.3 2 25 413 436 412 437 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF197-205 - 1029 3.4e-154 495.1 141.5 4 23 4.6e-10 4.5e-07 30.0 1.5 2 24 441 463 440 465 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF197-205 - 1029 3.4e-154 495.1 141.5 5 23 5.4e-09 5.4e-06 26.6 0.1 5 25 472 492 468 493 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF197-205 - 1029 3.4e-154 495.1 141.5 6 23 9.8e-08 9.8e-05 22.6 0.6 2 24 497 519 496 520 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF197-205 - 1029 3.4e-154 495.1 141.5 7 23 2.1e-10 2.1e-07 31.0 0.1 2 25 525 548 524 549 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF197-205 - 1029 3.4e-154 495.1 141.5 8 23 7.5e-08 7.5e-05 23.0 0.3 2 24 553 575 552 577 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF197-205 - 1029 3.4e-154 495.1 141.5 9 23 2.1e-05 0.021 15.3 0.8 2 25 581 604 580 605 0.89 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF197-205 - 1029 3.4e-154 495.1 141.5 10 23 2e-08 2e-05 24.8 1.7 4 25 611 632 608 633 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF197-205 - 1029 3.4e-154 495.1 141.5 11 23 4.4e-09 4.4e-06 26.9 0.3 4 24 639 659 636 660 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF197-205 - 1029 3.4e-154 495.1 141.5 12 23 2.8e-09 2.8e-06 27.5 0.1 2 25 665 688 664 689 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF197-205 - 1029 3.4e-154 495.1 141.5 13 23 1.1e-09 1.1e-06 28.8 0.2 1 24 692 715 692 716 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF197-205 - 1029 3.4e-154 495.1 141.5 14 23 2e-08 2e-05 24.8 0.8 2 25 721 744 720 745 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF197-205 - 1029 3.4e-154 495.1 141.5 15 23 2.4e-10 2.3e-07 30.9 0.1 3 26 750 773 748 773 0.90 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF197-205 - 1029 3.4e-154 495.1 141.5 16 23 1.5e-09 1.4e-06 28.4 0.8 1 24 776 799 776 800 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF197-205 - 1029 3.4e-154 495.1 141.5 17 23 1.9e-07 0.00019 21.7 0.3 5 25 808 828 804 829 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF197-205 - 1029 3.4e-154 495.1 141.5 18 23 6.9e-11 6.9e-08 32.6 0.1 1 25 832 856 832 857 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF197-205 - 1029 3.4e-154 495.1 141.5 19 23 1.6e-07 0.00016 22.0 0.5 1 23 860 882 860 885 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF197-205 - 1029 3.4e-154 495.1 141.5 20 23 4.9e-11 4.9e-08 33.0 0.2 1 25 888 912 888 913 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF197-205 - 1029 3.4e-154 495.1 141.5 21 23 2.1e-12 2e-09 37.4 0.7 1 26 916 941 916 941 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF197-205 - 1029 3.4e-154 495.1 141.5 22 23 2.7e-08 2.6e-05 24.4 0.1 1 25 944 968 944 969 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF197-205 - 1029 3.4e-154 495.1 141.5 23 23 0.00048 0.48 11.0 0.2 1 24 972 995 972 997 0.86 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZNF197-205 - 1029 9.3e-114 366.0 165.7 1 23 0.0047 4.6 7.9 8.0 1 23 370 392 370 392 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF197-205 - 1029 9.3e-114 366.0 165.7 2 23 8.4e-07 0.00084 19.7 1.8 1 23 398 420 398 420 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF197-205 - 1029 9.3e-114 366.0 165.7 3 23 2e-08 2e-05 24.8 0.4 1 23 426 448 426 448 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF197-205 - 1029 9.3e-114 366.0 165.7 4 23 9.4e-08 9.4e-05 22.7 1.8 1 23 454 476 454 476 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF197-205 - 1029 9.3e-114 366.0 165.7 5 23 1.5e-08 1.5e-05 25.2 0.3 1 23 482 504 482 504 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF197-205 - 1029 9.3e-114 366.0 165.7 6 23 5.5e-06 0.0055 17.1 0.9 1 23 510 532 510 532 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF197-205 - 1029 9.3e-114 366.0 165.7 7 23 1.3e-07 0.00013 22.3 0.5 1 23 538 560 538 560 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF197-205 - 1029 9.3e-114 366.0 165.7 8 23 2.9e-08 2.9e-05 24.3 0.8 1 23 566 588 566 588 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF197-205 - 1029 9.3e-114 366.0 165.7 9 23 1.2e-06 0.0012 19.2 1.6 3 23 596 616 594 616 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF197-205 - 1029 9.3e-114 366.0 165.7 10 23 5.2e-08 5.2e-05 23.5 0.8 1 23 622 644 622 644 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF197-205 - 1029 9.3e-114 366.0 165.7 11 23 2.8e-06 0.0028 18.0 0.4 1 23 650 672 650 672 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF197-205 - 1029 9.3e-114 366.0 165.7 12 23 1.4e-07 0.00014 22.1 0.2 1 23 678 700 678 700 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF197-205 - 1029 9.3e-114 366.0 165.7 13 23 2.7e-06 0.0027 18.1 1.1 1 23 706 728 706 728 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF197-205 - 1029 9.3e-114 366.0 165.7 14 23 6.1e-09 6.1e-06 26.4 0.5 1 23 734 756 734 756 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF197-205 - 1029 9.3e-114 366.0 165.7 15 23 2.1e-07 0.00021 21.5 0.3 1 23 762 784 762 784 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF197-205 - 1029 9.3e-114 366.0 165.7 16 23 4.1e-06 0.0041 17.5 0.7 1 23 790 812 790 812 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF197-205 - 1029 9.3e-114 366.0 165.7 17 23 3e-10 3e-07 30.5 0.5 1 23 818 840 818 840 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF197-205 - 1029 9.3e-114 366.0 165.7 18 23 2.5e-07 0.00025 21.3 0.2 1 23 846 868 846 868 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF197-205 - 1029 9.3e-114 366.0 165.7 19 23 5.7e-07 0.00057 20.2 1.7 1 23 874 896 874 896 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF197-205 - 1029 9.3e-114 366.0 165.7 20 23 3.8e-09 3.7e-06 27.1 0.8 1 23 902 924 902 924 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF197-205 - 1029 9.3e-114 366.0 165.7 21 23 2.2e-07 0.00022 21.5 1.3 1 23 930 952 930 952 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF197-205 - 1029 9.3e-114 366.0 165.7 22 23 9.5e-08 9.5e-05 22.7 0.8 3 23 960 980 958 980 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF197-205 - 1029 9.3e-114 366.0 165.7 23 23 3 3e+03 -1.0 0.1 5 16 987 1001 985 1003 0.83 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZNF197-205 - 1029 4.5e-64 207.5 152.5 1 22 0.0018 1.8 9.6 5.7 1 23 370 392 370 393 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF197-205 - 1029 4.5e-64 207.5 152.5 2 22 7.2e-05 0.071 14.0 1.5 1 23 398 420 398 421 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF197-205 - 1029 4.5e-64 207.5 152.5 3 22 1.9e-05 0.019 15.8 0.4 1 23 426 448 426 449 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF197-205 - 1029 4.5e-64 207.5 152.5 4 22 4.1e-05 0.04 14.7 1.3 1 23 454 476 454 477 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF197-205 - 1029 4.5e-64 207.5 152.5 5 22 2.1e-05 0.021 15.6 0.4 1 23 482 504 482 505 0.89 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF197-205 - 1029 4.5e-64 207.5 152.5 6 22 0.0032 3.2 8.8 0.8 1 23 510 532 510 533 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF197-205 - 1029 4.5e-64 207.5 152.5 7 22 3.8e-05 0.038 14.8 0.3 1 23 538 560 538 561 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF197-205 - 1029 4.5e-64 207.5 152.5 8 22 3.1e-05 0.031 15.1 0.9 1 23 566 588 566 589 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF197-205 - 1029 4.5e-64 207.5 152.5 9 22 2.3e-05 0.023 15.5 1.1 1 23 594 616 594 617 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF197-205 - 1029 4.5e-64 207.5 152.5 10 22 7.3e-05 0.073 14.0 0.6 1 23 622 644 622 645 0.89 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF197-205 - 1029 4.5e-64 207.5 152.5 11 22 0.00071 0.71 10.9 0.5 1 23 650 672 650 673 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF197-205 - 1029 4.5e-64 207.5 152.5 12 22 1.6e-05 0.016 16.0 0.1 1 23 678 700 678 701 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF197-205 - 1029 4.5e-64 207.5 152.5 13 22 0.00023 0.23 12.4 1.0 1 23 706 728 706 729 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF197-205 - 1029 4.5e-64 207.5 152.5 14 22 1.1e-05 0.01 16.6 0.4 1 23 734 756 734 757 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF197-205 - 1029 4.5e-64 207.5 152.5 15 22 1.2e-05 0.012 16.4 0.3 1 23 762 784 762 785 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF197-205 - 1029 4.5e-64 207.5 152.5 16 22 0.00028 0.28 12.1 0.7 1 23 790 812 790 813 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF197-205 - 1029 4.5e-64 207.5 152.5 17 22 1.3e-05 0.013 16.2 0.3 1 23 818 840 818 841 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF197-205 - 1029 4.5e-64 207.5 152.5 18 22 0.00013 0.13 13.2 0.2 1 23 846 868 846 869 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF197-205 - 1029 4.5e-64 207.5 152.5 19 22 0.00031 0.31 12.0 1.3 1 23 874 896 874 897 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF197-205 - 1029 4.5e-64 207.5 152.5 20 22 1e-05 0.01 16.6 0.5 1 23 902 924 902 925 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF197-205 - 1029 4.5e-64 207.5 152.5 21 22 1.8e-05 0.018 15.8 0.8 1 23 930 952 930 953 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF197-205 - 1029 4.5e-64 207.5 152.5 22 22 0.00031 0.31 12.0 0.6 2 23 959 980 958 981 0.93 C2H2-type zinc finger SCAN PF02023.17 90 ZNF197-205 - 1029 5.2e-40 135.2 0.7 1 1 1.4e-42 1.4e-39 133.8 0.7 2 88 39 125 38 127 0.97 SCAN domain zf-C2H2_6 PF13912.6 27 ZNF197-205 - 1029 4e-37 125.5 146.1 1 22 0.041 41 4.3 3.8 2 24 370 392 369 395 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF197-205 - 1029 4e-37 125.5 146.1 2 22 0.00036 0.36 10.9 2.0 2 25 398 421 398 423 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF197-205 - 1029 4e-37 125.5 146.1 3 22 0.0037 3.6 7.7 0.8 2 12 426 436 426 437 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF197-205 - 1029 4e-37 125.5 146.1 4 22 0.00051 0.51 10.4 2.0 2 25 454 477 454 479 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF197-205 - 1029 4e-37 125.5 146.1 5 22 0.00049 0.49 10.5 0.3 2 12 482 492 482 505 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF197-205 - 1029 4e-37 125.5 146.1 6 22 0.18 1.8e+02 2.3 0.4 2 11 510 519 510 533 0.86 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF197-205 - 1029 4e-37 125.5 146.1 7 22 0.00018 0.18 11.9 0.3 2 20 538 556 538 563 0.74 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF197-205 - 1029 4e-37 125.5 146.1 8 22 0.00036 0.36 10.9 0.6 2 17 566 581 566 590 0.79 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF197-205 - 1029 4e-37 125.5 146.1 9 22 0.0039 3.9 7.6 1.3 2 26 594 618 593 619 0.90 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF197-205 - 1029 4e-37 125.5 146.1 10 22 0.0032 3.1 7.9 0.7 2 11 622 631 622 633 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF197-205 - 1029 4e-37 125.5 146.1 11 22 0.00088 0.87 9.7 0.4 2 11 650 659 650 672 0.89 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF197-205 - 1029 4e-37 125.5 146.1 12 22 5.5e-05 0.054 13.5 0.1 2 24 678 700 677 703 0.88 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF197-205 - 1029 4e-37 125.5 146.1 13 22 0.0039 3.9 7.6 0.7 2 16 706 720 706 731 0.75 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF197-205 - 1029 4e-37 125.5 146.1 14 22 0.0091 9 6.4 0.3 1 24 733 756 733 759 0.87 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF197-205 - 1029 4e-37 125.5 146.1 15 22 1.8e-07 0.00018 21.4 0.2 2 25 762 785 762 787 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF197-205 - 1029 4e-37 125.5 146.1 16 22 0.00052 0.52 10.4 0.9 2 24 790 812 790 815 0.89 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF197-205 - 1029 4e-37 125.5 146.1 17 22 9e-05 0.09 12.8 0.3 2 24 818 840 817 843 0.90 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF197-205 - 1029 4e-37 125.5 146.1 18 22 5.7e-05 0.056 13.5 0.3 2 24 846 868 846 871 0.90 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF197-205 - 1029 4e-37 125.5 146.1 19 22 0.00042 0.42 10.7 0.4 2 24 874 896 873 899 0.89 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF197-205 - 1029 4e-37 125.5 146.1 20 22 0.0018 1.8 8.7 0.5 2 22 902 922 902 926 0.81 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF197-205 - 1029 4e-37 125.5 146.1 21 22 3.5e-05 0.035 14.1 0.6 2 24 930 952 930 955 0.92 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF197-205 - 1029 4e-37 125.5 146.1 22 22 0.0035 3.5 7.7 0.3 2 24 958 980 958 983 0.88 C2H2-type zinc finger Zn-ribbon_8 PF09723.10 40 ZNF197-205 - 1029 1.7e-21 76.0 118.0 1 17 0.0018 1.8 8.8 3.3 6 34 370 405 369 411 0.81 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF197-205 - 1029 1.7e-21 76.0 118.0 2 17 9.8e-06 0.0098 16.0 2.1 6 34 426 461 425 466 0.92 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF197-205 - 1029 1.7e-21 76.0 118.0 3 17 8.4e-05 0.084 13.0 2.8 6 34 482 517 481 520 0.90 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF197-205 - 1029 1.7e-21 76.0 118.0 4 17 0.0015 1.5 9.0 4.7 6 35 510 546 508 550 0.88 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF197-205 - 1029 1.7e-21 76.0 118.0 5 17 0.00025 0.25 11.5 4.8 6 34 538 573 537 574 0.88 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF197-205 - 1029 1.7e-21 76.0 118.0 6 17 2.4e-05 0.024 14.8 1.1 6 34 566 601 565 607 0.91 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF197-205 - 1029 1.7e-21 76.0 118.0 7 17 0.00047 0.47 10.6 3.1 6 36 594 631 593 634 0.79 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF197-205 - 1029 1.7e-21 76.0 118.0 8 17 0.00048 0.48 10.6 5.3 6 34 622 657 621 659 0.91 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF197-205 - 1029 1.7e-21 76.0 118.0 9 17 0.0011 1.1 9.4 4.5 6 34 650 685 649 686 0.86 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF197-205 - 1029 1.7e-21 76.0 118.0 10 17 0.006 6 7.1 6.1 6 34 678 713 677 715 0.73 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF197-205 - 1029 1.7e-21 76.0 118.0 11 17 0.00054 0.54 10.4 5.8 6 34 706 741 705 744 0.86 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF197-205 - 1029 1.7e-21 76.0 118.0 12 17 9.2e-05 0.092 12.9 3.6 6 34 734 769 732 773 0.89 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF197-205 - 1029 1.7e-21 76.0 118.0 13 17 0.064 63 3.8 8.2 6 34 762 797 761 803 0.85 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF197-205 - 1029 1.7e-21 76.0 118.0 14 17 1.8e-06 0.0018 18.3 1.6 6 34 818 853 817 859 0.91 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF197-205 - 1029 1.7e-21 76.0 118.0 15 17 0.00043 0.43 10.7 2.0 6 34 846 881 845 887 0.91 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF197-205 - 1029 1.7e-21 76.0 118.0 16 17 6.5e-06 0.0065 16.6 2.2 6 34 902 937 901 944 0.90 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF197-205 - 1029 1.7e-21 76.0 118.0 17 17 0.021 21 5.4 1.9 6 29 958 988 957 994 0.83 Zinc ribbon domain KRAB PF01352.27 42 ZNF197-205 - 1029 6.6e-21 73.7 0.1 1 1 1.6e-23 1.6e-20 72.5 0.1 1 42 216 257 216 257 0.98 KRAB box zf-C2H2_jaz PF12171.8 27 ZNF197-205 - 1029 2e-09 37.5 108.1 1 22 0.41 4.1e+02 1.4 5.8 2 21 370 389 370 390 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF197-205 - 1029 2e-09 37.5 108.1 2 22 0.0007 0.69 10.3 0.2 2 24 398 420 397 421 0.91 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF197-205 - 1029 2e-09 37.5 108.1 3 22 0.045 45 4.5 0.2 2 22 426 446 425 446 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF197-205 - 1029 2e-09 37.5 108.1 4 22 0.015 15 6.1 0.0 2 21 454 473 453 474 0.85 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF197-205 - 1029 2e-09 37.5 108.1 5 22 0.21 2.1e+02 2.4 0.3 2 21 482 501 481 502 0.81 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF197-205 - 1029 2e-09 37.5 108.1 6 22 3.8 3.8e+03 -1.6 0.6 2 20 510 528 509 530 0.74 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF197-205 - 1029 2e-09 37.5 108.1 7 22 0.086 86 3.6 0.2 2 12 538 548 537 558 0.83 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF197-205 - 1029 2e-09 37.5 108.1 8 22 0.00023 0.22 11.8 0.1 2 22 566 586 565 586 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF197-205 - 1029 2e-09 37.5 108.1 9 22 0.025 25 5.3 0.5 4 22 596 614 594 614 0.91 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF197-205 - 1029 2e-09 37.5 108.1 10 22 0.72 7.2e+02 0.7 0.3 2 11 622 631 621 636 0.90 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF197-205 - 1029 2e-09 37.5 108.1 11 22 0.15 1.5e+02 2.8 0.1 2 21 650 669 649 670 0.80 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF197-205 - 1029 2e-09 37.5 108.1 12 22 0.0016 1.6 9.1 0.0 2 22 678 698 677 698 0.95 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF197-205 - 1029 2e-09 37.5 108.1 13 22 0.0004 0.4 11.0 0.1 2 22 706 726 705 726 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF197-205 - 1029 2e-09 37.5 108.1 14 22 0.24 2.4e+02 2.2 0.1 2 21 734 753 733 754 0.86 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF197-205 - 1029 2e-09 37.5 108.1 15 22 0.00094 0.94 9.8 0.0 2 22 762 782 761 782 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF197-205 - 1029 2e-09 37.5 108.1 16 22 0.99 9.9e+02 0.2 0.4 2 21 790 809 789 810 0.77 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF197-205 - 1029 2e-09 37.5 108.1 17 22 0.49 4.9e+02 1.2 0.3 2 21 818 837 817 838 0.87 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF197-205 - 1029 2e-09 37.5 108.1 18 22 0.34 3.4e+02 1.7 0.1 2 21 846 865 845 866 0.81 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF197-205 - 1029 2e-09 37.5 108.1 19 22 0.012 12 6.3 0.1 2 22 874 894 873 894 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF197-205 - 1029 2e-09 37.5 108.1 20 22 0.036 36 4.8 0.4 2 22 902 922 901 922 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF197-205 - 1029 2e-09 37.5 108.1 21 22 0.0094 9.3 6.7 0.1 2 22 930 950 929 950 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF197-205 - 1029 2e-09 37.5 108.1 22 22 0.92 9.1e+02 0.3 0.5 4 22 960 978 958 978 0.90 Zinc-finger double-stranded RNA-binding zf_UBZ PF18439.1 32 ZNF197-205 - 1029 5e-09 35.6 90.4 1 22 4.6 4.6e+03 -2.7 1.6 3 12 370 379 368 383 0.85 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF197-205 - 1029 5e-09 35.6 90.4 2 22 0.17 1.7e+02 1.9 0.1 3 13 398 408 396 417 0.79 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF197-205 - 1029 5e-09 35.6 90.4 3 22 0.011 11 5.8 0.1 3 15 426 438 424 445 0.82 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF197-205 - 1029 5e-09 35.6 90.4 4 22 0.06 60 3.3 0.3 3 12 454 463 452 467 0.83 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF197-205 - 1029 5e-09 35.6 90.4 5 22 0.013 13 5.5 0.1 3 15 482 494 480 500 0.88 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF197-205 - 1029 5e-09 35.6 90.4 6 22 0.24 2.4e+02 1.4 0.2 3 12 510 519 508 525 0.84 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF197-205 - 1029 5e-09 35.6 90.4 7 22 0.002 2 8.1 0.1 3 15 538 550 536 557 0.85 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF197-205 - 1029 5e-09 35.6 90.4 8 22 0.011 10 5.8 0.1 3 15 566 578 564 585 0.79 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF197-205 - 1029 5e-09 35.6 90.4 9 22 0.046 46 3.7 0.1 2 14 593 605 592 612 0.85 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF197-205 - 1029 5e-09 35.6 90.4 10 22 0.025 25 4.6 0.1 3 15 622 634 620 637 0.83 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF197-205 - 1029 5e-09 35.6 90.4 11 22 0.063 63 3.3 0.1 3 13 650 660 648 672 0.83 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF197-205 - 1029 5e-09 35.6 90.4 12 22 0.033 33 4.2 0.1 2 12 677 687 676 697 0.80 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF197-205 - 1029 5e-09 35.6 90.4 13 22 0.017 17 5.1 0.2 3 16 706 720 704 725 0.79 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF197-205 - 1029 5e-09 35.6 90.4 14 22 0.01 10 5.8 0.0 3 13 734 744 732 752 0.85 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF197-205 - 1029 5e-09 35.6 90.4 15 22 0.002 2 8.1 0.1 3 20 762 780 760 781 0.92 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF197-205 - 1029 5e-09 35.6 90.4 16 22 0.017 17 5.1 0.5 3 12 790 799 788 808 0.86 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF197-205 - 1029 5e-09 35.6 90.4 17 22 0.019 19 4.9 0.1 2 13 817 828 816 837 0.84 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF197-205 - 1029 5e-09 35.6 90.4 18 22 0.0076 7.5 6.2 0.1 3 21 846 865 844 865 0.86 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF197-205 - 1029 5e-09 35.6 90.4 19 22 1.6 1.6e+03 -1.2 0.1 2 15 873 886 872 893 0.77 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF197-205 - 1029 5e-09 35.6 90.4 20 22 0.032 31 4.3 0.1 3 15 902 914 900 921 0.84 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF197-205 - 1029 5e-09 35.6 90.4 21 22 0.04 40 3.9 0.1 3 13 930 940 928 948 0.87 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF197-205 - 1029 5e-09 35.6 90.4 22 22 2.2 2.2e+03 -1.7 0.1 3 12 958 967 957 976 0.83 Ubiquitin-Binding Zinc Finger zinc_ribbon_15 PF17032.5 86 ZNF197-205 - 1029 6.8e-09 36.4 99.9 1 12 0.037 37 5.2 3.9 34 74 366 406 360 413 0.85 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF197-205 - 1029 6.8e-09 36.4 99.9 2 12 0.006 6 7.7 1.7 35 73 423 461 411 468 0.85 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF197-205 - 1029 6.8e-09 36.4 99.9 3 12 0.0016 1.6 9.6 1.5 32 74 477 518 463 524 0.83 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF197-205 - 1029 6.8e-09 36.4 99.9 4 12 0.0018 1.8 9.4 1.3 31 75 531 575 524 580 0.85 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF197-205 - 1029 6.8e-09 36.4 99.9 5 12 0.0053 5.3 7.9 7.0 31 78 587 634 584 664 0.85 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF197-205 - 1029 6.8e-09 36.4 99.9 6 12 0.007 7 7.5 0.4 34 77 646 689 636 696 0.83 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF197-205 - 1029 6.8e-09 36.4 99.9 7 12 0.00078 0.78 10.5 3.3 30 78 670 718 651 724 0.84 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF197-205 - 1029 6.8e-09 36.4 99.9 8 12 0.001 1 10.1 1.1 29 78 725 774 716 780 0.85 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF197-205 - 1029 6.8e-09 36.4 99.9 9 12 0.066 66 4.4 6.1 39 73 763 797 754 833 0.53 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF197-205 - 1029 6.8e-09 36.4 99.9 10 12 0.00052 0.52 11.1 1.1 30 78 838 886 833 892 0.85 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF197-205 - 1029 6.8e-09 36.4 99.9 11 12 0.0011 1.1 10.1 3.1 31 78 895 942 889 948 0.87 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF197-205 - 1029 6.8e-09 36.4 99.9 12 12 0.36 3.6e+02 2.0 2.0 32 69 952 989 946 1000 0.67 zinc-ribbon family C1_4 PF07975.12 55 ZNF197-205 - 1029 6.3e-07 29.5 103.8 1 19 7.7 7.6e+03 -2.8 6.1 22 35 366 379 350 405 0.73 TFIIH C1-like domain C1_4 PF07975.12 55 ZNF197-205 - 1029 6.3e-07 29.5 103.8 2 19 0.1 1e+02 3.3 1.2 2 48 400 448 399 451 0.67 TFIIH C1-like domain C1_4 PF07975.12 55 ZNF197-205 - 1029 6.3e-07 29.5 103.8 3 19 0.084 83 3.5 2.1 2 36 428 464 427 478 0.74 TFIIH C1-like domain C1_4 PF07975.12 55 ZNF197-205 - 1029 6.3e-07 29.5 103.8 4 19 0.076 75 3.7 0.2 24 49 480 505 465 508 0.86 TFIIH C1-like domain C1_4 PF07975.12 55 ZNF197-205 - 1029 6.3e-07 29.5 103.8 5 19 0.0013 1.3 9.3 2.4 2 49 484 533 483 535 0.82 TFIIH C1-like domain C1_4 PF07975.12 55 ZNF197-205 - 1029 6.3e-07 29.5 103.8 6 19 0.013 13 6.1 2.5 2 49 512 561 512 564 0.78 TFIIH C1-like domain C1_4 PF07975.12 55 ZNF197-205 - 1029 6.3e-07 29.5 103.8 7 19 0.039 39 4.6 4.3 2 49 540 589 539 598 0.78 TFIIH C1-like domain C1_4 PF07975.12 55 ZNF197-205 - 1029 6.3e-07 29.5 103.8 8 19 0.37 3.6e+02 1.5 3.4 2 38 568 606 567 619 0.73 TFIIH C1-like domain C1_4 PF07975.12 55 ZNF197-205 - 1029 6.3e-07 29.5 103.8 9 19 0.00086 0.85 9.9 2.8 2 49 596 645 593 648 0.78 TFIIH C1-like domain C1_4 PF07975.12 55 ZNF197-205 - 1029 6.3e-07 29.5 103.8 10 19 0.029 29 5.0 0.1 25 49 649 673 646 676 0.90 TFIIH C1-like domain C1_4 PF07975.12 55 ZNF197-205 - 1029 6.3e-07 29.5 103.8 11 19 0.0029 2.9 8.2 0.2 23 49 675 701 663 703 0.89 TFIIH C1-like domain C1_4 PF07975.12 55 ZNF197-205 - 1029 6.3e-07 29.5 103.8 12 19 0.00015 0.15 12.3 1.5 1 49 707 757 707 759 0.88 TFIIH C1-like domain C1_4 PF07975.12 55 ZNF197-205 - 1029 6.3e-07 29.5 103.8 13 19 0.011 11 6.4 2.2 1 48 763 812 763 814 0.80 TFIIH C1-like domain C1_4 PF07975.12 55 ZNF197-205 - 1029 6.3e-07 29.5 103.8 14 19 0.017 17 5.7 0.3 20 49 812 841 802 844 0.85 TFIIH C1-like domain C1_4 PF07975.12 55 ZNF197-205 - 1029 6.3e-07 29.5 103.8 15 19 0.14 1.4e+02 2.9 1.6 2 48 820 868 819 872 0.73 TFIIH C1-like domain C1_4 PF07975.12 55 ZNF197-205 - 1029 6.3e-07 29.5 103.8 16 19 0.025 25 5.2 1.4 2 49 848 897 847 899 0.82 TFIIH C1-like domain C1_4 PF07975.12 55 ZNF197-205 - 1029 6.3e-07 29.5 103.8 17 19 0.00029 0.29 11.4 2.1 1 49 875 925 875 927 0.89 TFIIH C1-like domain C1_4 PF07975.12 55 ZNF197-205 - 1029 6.3e-07 29.5 103.8 18 19 0.004 4 7.8 3.6 1 48 903 952 903 960 0.80 TFIIH C1-like domain C1_4 PF07975.12 55 ZNF197-205 - 1029 6.3e-07 29.5 103.8 19 19 0.029 29 5.0 3.7 1 49 931 981 931 988 0.84 TFIIH C1-like domain # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF197-205.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF197-205.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF197-205.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF197-205.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF197-205.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:01:12 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF197-206.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF197-206.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF197-206.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF197-206.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF197-206.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:01:13 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZNF200-201 - 394 2.8e-27 93.9 35.5 1 6 0.00095 0.52 10.8 0.1 15 25 251 261 244 262 0.86 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF200-201 - 394 2.8e-27 93.9 35.5 2 6 1.4e-09 7.6e-07 29.3 3.1 2 26 266 290 265 290 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF200-201 - 394 2.8e-27 93.9 35.5 3 6 1.3e-11 6.9e-09 35.7 0.7 1 25 293 317 293 318 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF200-201 - 394 2.8e-27 93.9 35.5 4 6 1.3e-07 7.3e-05 23.0 2.8 3 24 323 344 321 346 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF200-201 - 394 2.8e-27 93.9 35.5 5 6 6e-05 0.033 14.6 0.4 3 25 351 373 349 374 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF200-201 - 394 2.8e-27 93.9 35.5 6 6 2.5 1.3e+03 0.1 0.1 2 10 378 386 377 391 0.85 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZNF200-201 - 394 1.4e-22 78.8 40.4 1 5 1.8e-08 9.5e-06 25.8 0.8 1 23 251 273 251 273 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF200-201 - 394 1.4e-22 78.8 40.4 2 5 5.7e-08 3.1e-05 24.2 4.9 1 23 279 301 279 301 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF200-201 - 394 1.4e-22 78.8 40.4 3 5 5.1e-05 0.028 14.9 2.4 1 23 307 329 307 329 0.92 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF200-201 - 394 1.4e-22 78.8 40.4 4 5 1e-07 5.5e-05 23.4 0.3 1 23 335 357 335 357 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF200-201 - 394 1.4e-22 78.8 40.4 5 5 0.00047 0.26 11.8 4.0 3 23 365 385 363 385 0.97 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZNF200-201 - 394 1.2e-14 53.7 35.8 1 5 2e-06 0.0011 19.6 0.6 1 23 251 273 251 274 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF200-201 - 394 1.2e-14 53.7 35.8 2 5 7.5e-05 0.041 14.7 2.8 3 23 281 301 279 302 0.91 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF200-201 - 394 1.2e-14 53.7 35.8 3 5 0.0015 0.84 10.6 1.7 1 20 307 326 307 329 0.79 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF200-201 - 394 1.2e-14 53.7 35.8 4 5 1e-05 0.0056 17.4 0.4 1 23 335 357 335 358 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF200-201 - 394 1.2e-14 53.7 35.8 5 5 0.00067 0.36 11.8 2.8 2 23 364 385 363 386 0.93 C2H2-type zinc finger # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF200-201.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF200-201.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF200-201.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF200-201.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF200-201.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:01:13 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZNF200-202 - 394 2.8e-27 93.9 35.5 1 6 0.00098 0.52 10.8 0.1 15 25 251 261 244 262 0.86 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF200-202 - 394 2.8e-27 93.9 35.5 2 6 1.4e-09 7.6e-07 29.3 3.1 2 26 266 290 265 290 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF200-202 - 394 2.8e-27 93.9 35.5 3 6 1.3e-11 6.9e-09 35.7 0.7 1 25 293 317 293 318 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF200-202 - 394 2.8e-27 93.9 35.5 4 6 1.4e-07 7.3e-05 23.0 2.8 3 24 323 344 321 346 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF200-202 - 394 2.8e-27 93.9 35.5 5 6 6.2e-05 0.033 14.6 0.4 3 25 351 373 349 374 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF200-202 - 394 2.8e-27 93.9 35.5 6 6 2.5 1.3e+03 0.1 0.1 2 10 378 386 377 391 0.85 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZNF200-202 - 394 1.4e-22 78.8 40.4 1 5 1.8e-08 9.5e-06 25.8 0.8 1 23 251 273 251 273 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF200-202 - 394 1.4e-22 78.8 40.4 2 5 5.9e-08 3.1e-05 24.2 4.9 1 23 279 301 279 301 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF200-202 - 394 1.4e-22 78.8 40.4 3 5 5.3e-05 0.028 14.9 2.4 1 23 307 329 307 329 0.92 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF200-202 - 394 1.4e-22 78.8 40.4 4 5 1e-07 5.5e-05 23.4 0.3 1 23 335 357 335 357 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF200-202 - 394 1.4e-22 78.8 40.4 5 5 0.00048 0.26 11.8 4.0 3 23 365 385 363 385 0.97 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZNF200-202 - 394 1.2e-14 53.7 35.8 1 5 2.1e-06 0.0011 19.6 0.6 1 23 251 273 251 274 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF200-202 - 394 1.2e-14 53.7 35.8 2 5 7.7e-05 0.041 14.7 2.8 3 23 281 301 279 302 0.91 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF200-202 - 394 1.2e-14 53.7 35.8 3 5 0.0016 0.84 10.6 1.7 1 20 307 326 307 329 0.79 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF200-202 - 394 1.2e-14 53.7 35.8 4 5 1.1e-05 0.0056 17.4 0.4 1 23 335 357 335 358 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF200-202 - 394 1.2e-14 53.7 35.8 5 5 0.00069 0.36 11.8 2.8 2 23 364 385 363 386 0.93 C2H2-type zinc finger # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF200-202.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF200-202.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF200-202.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF200-202.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF200-202.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:01:14 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZNF200-203 - 394 2.8e-27 93.9 35.5 1 6 0.00098 0.52 10.8 0.1 15 25 251 261 244 262 0.86 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF200-203 - 394 2.8e-27 93.9 35.5 2 6 1.4e-09 7.6e-07 29.3 3.1 2 26 266 290 265 290 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF200-203 - 394 2.8e-27 93.9 35.5 3 6 1.3e-11 6.9e-09 35.7 0.7 1 25 293 317 293 318 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF200-203 - 394 2.8e-27 93.9 35.5 4 6 1.4e-07 7.3e-05 23.0 2.8 3 24 323 344 321 346 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF200-203 - 394 2.8e-27 93.9 35.5 5 6 6.2e-05 0.033 14.6 0.4 3 25 351 373 349 374 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF200-203 - 394 2.8e-27 93.9 35.5 6 6 2.5 1.3e+03 0.1 0.1 2 10 378 386 377 391 0.85 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZNF200-203 - 394 1.4e-22 78.8 40.4 1 5 1.8e-08 9.5e-06 25.8 0.8 1 23 251 273 251 273 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF200-203 - 394 1.4e-22 78.8 40.4 2 5 5.9e-08 3.1e-05 24.2 4.9 1 23 279 301 279 301 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF200-203 - 394 1.4e-22 78.8 40.4 3 5 5.3e-05 0.028 14.9 2.4 1 23 307 329 307 329 0.92 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF200-203 - 394 1.4e-22 78.8 40.4 4 5 1e-07 5.5e-05 23.4 0.3 1 23 335 357 335 357 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF200-203 - 394 1.4e-22 78.8 40.4 5 5 0.00048 0.26 11.8 4.0 3 23 365 385 363 385 0.97 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZNF200-203 - 394 1.2e-14 53.7 35.8 1 5 2.1e-06 0.0011 19.6 0.6 1 23 251 273 251 274 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF200-203 - 394 1.2e-14 53.7 35.8 2 5 7.7e-05 0.041 14.7 2.8 3 23 281 301 279 302 0.91 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF200-203 - 394 1.2e-14 53.7 35.8 3 5 0.0016 0.84 10.6 1.7 1 20 307 326 307 329 0.79 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF200-203 - 394 1.2e-14 53.7 35.8 4 5 1.1e-05 0.0056 17.4 0.4 1 23 335 357 335 358 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF200-203 - 394 1.2e-14 53.7 35.8 5 5 0.00069 0.36 11.8 2.8 2 23 364 385 363 386 0.93 C2H2-type zinc finger # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF200-203.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF200-203.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF200-203.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF200-203.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF200-203.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:01:14 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZNF200-204 - 395 2.8e-27 93.9 35.5 1 6 0.00099 0.52 10.8 0.1 15 25 252 262 245 263 0.86 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF200-204 - 395 2.8e-27 93.9 35.5 2 6 1.4e-09 7.6e-07 29.3 3.1 2 26 267 291 266 291 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF200-204 - 395 2.8e-27 93.9 35.5 3 6 1.3e-11 7e-09 35.7 0.7 1 25 294 318 294 319 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF200-204 - 395 2.8e-27 93.9 35.5 4 6 1.4e-07 7.3e-05 23.0 2.8 3 24 324 345 322 347 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF200-204 - 395 2.8e-27 93.9 35.5 5 6 6.2e-05 0.033 14.6 0.4 3 25 352 374 350 375 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF200-204 - 395 2.8e-27 93.9 35.5 6 6 2.5 1.3e+03 0.1 0.1 2 10 379 387 378 392 0.85 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZNF200-204 - 395 1.4e-22 78.8 40.4 1 5 1.8e-08 9.6e-06 25.8 0.8 1 23 252 274 252 274 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF200-204 - 395 1.4e-22 78.8 40.4 2 5 5.9e-08 3.1e-05 24.2 4.9 1 23 280 302 280 302 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF200-204 - 395 1.4e-22 78.8 40.4 3 5 5.3e-05 0.028 14.9 2.4 1 23 308 330 308 330 0.92 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF200-204 - 395 1.4e-22 78.8 40.4 4 5 1.1e-07 5.5e-05 23.4 0.3 1 23 336 358 336 358 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF200-204 - 395 1.4e-22 78.8 40.4 5 5 0.00049 0.26 11.8 4.0 3 23 366 386 364 386 0.97 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZNF200-204 - 395 1.2e-14 53.7 35.8 1 5 2.1e-06 0.0011 19.6 0.6 1 23 252 274 252 275 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF200-204 - 395 1.2e-14 53.7 35.8 2 5 7.8e-05 0.041 14.7 2.8 3 23 282 302 280 303 0.91 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF200-204 - 395 1.2e-14 53.7 35.8 3 5 0.0016 0.84 10.6 1.7 1 20 308 327 308 330 0.79 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF200-204 - 395 1.2e-14 53.7 35.8 4 5 1.1e-05 0.0056 17.4 0.4 1 23 336 358 336 359 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF200-204 - 395 1.2e-14 53.7 35.8 5 5 0.00069 0.36 11.8 2.8 2 23 365 386 364 387 0.93 C2H2-type zinc finger # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF200-204.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF200-204.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF200-204.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF200-204.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF200-204.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:01:14 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZNF200-205 - 395 2.8e-27 93.9 35.5 1 6 0.00099 0.52 10.8 0.1 15 25 252 262 245 263 0.86 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF200-205 - 395 2.8e-27 93.9 35.5 2 6 1.4e-09 7.6e-07 29.3 3.1 2 26 267 291 266 291 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF200-205 - 395 2.8e-27 93.9 35.5 3 6 1.3e-11 7e-09 35.7 0.7 1 25 294 318 294 319 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF200-205 - 395 2.8e-27 93.9 35.5 4 6 1.4e-07 7.3e-05 23.0 2.8 3 24 324 345 322 347 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF200-205 - 395 2.8e-27 93.9 35.5 5 6 6.2e-05 0.033 14.6 0.4 3 25 352 374 350 375 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF200-205 - 395 2.8e-27 93.9 35.5 6 6 2.5 1.3e+03 0.1 0.1 2 10 379 387 378 392 0.85 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZNF200-205 - 395 1.4e-22 78.8 40.4 1 5 1.8e-08 9.6e-06 25.8 0.8 1 23 252 274 252 274 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF200-205 - 395 1.4e-22 78.8 40.4 2 5 5.9e-08 3.1e-05 24.2 4.9 1 23 280 302 280 302 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF200-205 - 395 1.4e-22 78.8 40.4 3 5 5.3e-05 0.028 14.9 2.4 1 23 308 330 308 330 0.92 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF200-205 - 395 1.4e-22 78.8 40.4 4 5 1.1e-07 5.5e-05 23.4 0.3 1 23 336 358 336 358 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF200-205 - 395 1.4e-22 78.8 40.4 5 5 0.00049 0.26 11.8 4.0 3 23 366 386 364 386 0.97 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZNF200-205 - 395 1.2e-14 53.7 35.8 1 5 2.1e-06 0.0011 19.6 0.6 1 23 252 274 252 275 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF200-205 - 395 1.2e-14 53.7 35.8 2 5 7.8e-05 0.041 14.7 2.8 3 23 282 302 280 303 0.91 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF200-205 - 395 1.2e-14 53.7 35.8 3 5 0.0016 0.84 10.6 1.7 1 20 308 327 308 330 0.79 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF200-205 - 395 1.2e-14 53.7 35.8 4 5 1.1e-05 0.0056 17.4 0.4 1 23 336 358 336 359 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF200-205 - 395 1.2e-14 53.7 35.8 5 5 0.00069 0.36 11.8 2.8 2 23 365 386 364 387 0.93 C2H2-type zinc finger # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF200-205.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF200-205.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF200-205.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF200-205.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF200-205.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:01:15 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZNF200-206 - 209 4e-29 99.7 35.7 1 6 0.00064 0.24 11.9 0.1 15 25 66 76 59 77 0.86 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF200-206 - 209 4e-29 99.7 35.7 2 6 8.8e-10 3.3e-07 30.4 3.1 2 26 81 105 80 105 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF200-206 - 209 4e-29 99.7 35.7 3 6 8e-12 3e-09 36.9 0.7 1 25 108 132 108 133 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF200-206 - 209 4e-29 99.7 35.7 4 6 8.5e-08 3.2e-05 24.2 2.8 3 24 138 159 136 161 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF200-206 - 209 4e-29 99.7 35.7 5 6 3.8e-05 0.014 15.8 0.4 3 25 166 188 164 189 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF200-206 - 209 4e-29 99.7 35.7 6 6 1.7 6.3e+02 1.1 0.2 2 10 193 201 192 207 0.85 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZNF200-206 - 209 3e-24 84.0 40.4 1 5 1.1e-08 4.2e-06 26.9 0.8 1 23 66 88 66 88 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF200-206 - 209 3e-24 84.0 40.4 2 5 3.6e-08 1.4e-05 25.3 4.9 1 23 94 116 94 116 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF200-206 - 209 3e-24 84.0 40.4 3 5 3.3e-05 0.012 16.0 2.4 1 23 122 144 122 144 0.92 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF200-206 - 209 3e-24 84.0 40.4 4 5 6.4e-08 2.4e-05 24.5 0.3 1 23 150 172 150 172 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF200-206 - 209 3e-24 84.0 40.4 5 5 0.0003 0.11 13.0 4.0 3 23 180 200 178 200 0.97 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZNF200-206 - 209 3e-16 58.7 35.9 1 5 1.3e-06 0.00047 20.8 0.6 1 23 66 88 66 89 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF200-206 - 209 3e-16 58.7 35.9 2 5 4.7e-05 0.018 15.9 2.8 3 23 96 116 94 117 0.91 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF200-206 - 209 3e-16 58.7 35.9 3 5 0.00098 0.37 11.8 1.7 1 20 122 141 122 144 0.80 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF200-206 - 209 3e-16 58.7 35.9 4 5 6.4e-06 0.0024 18.6 0.4 1 23 150 172 150 173 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF200-206 - 209 3e-16 58.7 35.9 5 5 0.00042 0.16 12.9 2.8 2 23 179 200 178 201 0.93 C2H2-type zinc finger zf_UBZ PF18439.1 32 ZNF200-206 - 209 4.6e-07 29.3 17.8 1 5 0.0016 0.58 9.8 0.1 2 20 65 84 64 85 0.81 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF200-206 - 209 4.6e-07 29.3 17.8 2 5 0.035 13 5.5 0.4 3 19 94 111 92 113 0.76 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF200-206 - 209 4.6e-07 29.3 17.8 3 5 0.0034 1.3 8.7 0.3 3 15 122 134 120 141 0.80 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF200-206 - 209 4.6e-07 29.3 17.8 4 5 0.00016 0.061 12.9 0.1 3 16 150 163 148 172 0.88 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF200-206 - 209 4.6e-07 29.3 17.8 5 5 0.32 1.2e+02 2.4 0.2 3 12 178 187 177 188 0.84 Ubiquitin-Binding Zinc Finger zf-C2H2_jaz PF12171.8 27 ZNF200-206 - 209 9e-07 29.0 26.4 1 4 3.5e-05 0.013 15.8 0.3 2 24 66 88 66 88 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF200-206 - 209 9e-07 29.0 26.4 2 4 0.0012 0.43 10.9 1.9 2 22 94 114 93 114 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF200-206 - 209 9e-07 29.0 26.4 3 4 0.85 3.2e+02 1.8 0.1 2 12 122 132 121 141 0.84 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF200-206 - 209 9e-07 29.0 26.4 4 4 9.8e-06 0.0036 17.5 0.2 2 24 150 172 149 173 0.96 Zinc-finger double-stranded RNA-binding # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF200-206.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF200-206.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF200-206.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF200-206.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF200-206.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:01:15 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF200-207.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF200-207.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF200-207.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF200-207.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF200-207.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:01:16 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF200-208.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF200-208.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF200-208.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF200-208.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF200-208.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:01:16 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF200-209.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF200-209.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF200-209.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF200-209.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF200-209.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:01:16 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZNF20-201 - 532 3.2e-84 273.9 120.0 1 15 0.016 32 5.2 0.1 2 25 120 153 119 154 0.70 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF20-201 - 532 3.2e-84 273.9 120.0 2 15 1.1 2.2e+03 -0.6 0.4 10 22 166 178 159 182 0.74 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF20-201 - 532 3.2e-84 273.9 120.0 3 15 5.7e-08 0.00011 22.4 0.8 3 24 187 208 186 209 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF20-201 - 532 3.2e-84 273.9 120.0 4 15 4.1e-10 8.1e-07 29.2 1.4 5 26 217 238 216 238 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF20-201 - 532 3.2e-84 273.9 120.0 5 15 0.00018 0.36 11.3 0.1 5 25 245 265 244 265 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF20-201 - 532 3.2e-84 273.9 120.0 6 15 3.4e-12 6.9e-09 35.7 1.2 3 24 271 292 269 294 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF20-201 - 532 3.2e-84 273.9 120.0 7 15 4.9e-10 9.8e-07 28.9 3.5 3 25 299 321 297 322 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF20-201 - 532 3.2e-84 273.9 120.0 8 15 7.7e-10 1.5e-06 28.3 4.3 1 25 325 349 325 350 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF20-201 - 532 3.2e-84 273.9 120.0 9 15 4.4e-08 8.7e-05 22.8 2.4 1 25 353 377 353 378 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF20-201 - 532 3.2e-84 273.9 120.0 10 15 2.1e-10 4.2e-07 30.1 2.0 2 26 382 406 381 406 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF20-201 - 532 3.2e-84 273.9 120.0 11 15 2.9e-11 5.8e-08 32.8 2.0 1 25 409 433 409 434 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF20-201 - 532 3.2e-84 273.9 120.0 12 15 4.2e-10 8.3e-07 29.2 3.6 5 25 441 461 437 462 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF20-201 - 532 3.2e-84 273.9 120.0 13 15 7.8e-12 1.6e-08 34.6 2.4 3 25 467 489 465 490 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF20-201 - 532 3.2e-84 273.9 120.0 14 15 5.2e-12 1e-08 35.2 1.5 3 24 494 515 492 517 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF20-201 - 532 3.2e-84 273.9 120.0 15 15 0.79 1.6e+03 -0.2 0.2 3 10 522 529 520 531 0.87 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZNF20-201 - 532 7.4e-38 126.9 130.8 1 16 0.14 2.8e+02 2.3 0.1 4 12 80 88 74 91 0.85 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF20-201 - 532 7.4e-38 126.9 130.8 2 16 0.0014 2.8 8.6 0.1 3 21 105 125 103 130 0.91 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF20-201 - 532 7.4e-38 126.9 130.8 3 16 0.011 21 5.8 0.2 5 19 147 161 145 161 0.94 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF20-201 - 532 7.4e-38 126.9 130.8 4 16 0.011 22 5.8 1.0 5 23 175 193 172 193 0.93 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF20-201 - 532 7.4e-38 126.9 130.8 5 16 0.0038 7.6 7.2 2.7 1 23 199 221 199 221 0.83 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF20-201 - 532 7.4e-38 126.9 130.8 6 16 2.8e-07 0.00056 20.2 1.1 1 23 227 249 227 249 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF20-201 - 532 7.4e-38 126.9 130.8 7 16 5.6e-06 0.011 16.1 0.4 2 23 256 277 255 277 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF20-201 - 532 7.4e-38 126.9 130.8 8 16 4.9e-06 0.0098 16.3 1.2 1 23 283 305 283 305 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF20-201 - 532 7.4e-38 126.9 130.8 9 16 1.7e-05 0.034 14.6 4.3 1 23 311 333 311 333 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF20-201 - 532 7.4e-38 126.9 130.8 10 16 5.9e-06 0.012 16.0 3.0 1 23 339 361 339 361 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF20-201 - 532 7.4e-38 126.9 130.8 11 16 3.2e-05 0.064 13.7 1.3 3 23 369 389 367 389 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF20-201 - 532 7.4e-38 126.9 130.8 12 16 7.8e-08 0.00016 22.0 2.5 1 23 395 417 395 417 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF20-201 - 532 7.4e-38 126.9 130.8 13 16 5.1e-06 0.01 16.2 4.5 1 23 423 445 423 445 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF20-201 - 532 7.4e-38 126.9 130.8 14 16 3.7e-05 0.075 13.5 2.7 1 23 451 473 451 473 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF20-201 - 532 7.4e-38 126.9 130.8 15 16 0.00049 0.97 10.0 1.9 1 15 479 492 479 500 0.72 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF20-201 - 532 7.4e-38 126.9 130.8 16 16 2.9e-06 0.0059 17.0 2.1 1 23 506 528 506 528 0.99 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZNF20-201 - 532 1.8e-33 112.3 123.9 1 16 0.64 1.3e+03 0.7 0.0 4 12 80 88 78 96 0.79 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF20-201 - 532 1.8e-33 112.3 123.9 2 16 2.3 4.6e+03 -1.0 0.0 6 22 110 126 104 127 0.70 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF20-201 - 532 1.8e-33 112.3 123.9 3 16 0.043 86 4.4 0.5 1 20 143 162 143 165 0.85 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF20-201 - 532 1.8e-33 112.3 123.9 4 16 0.016 31 5.8 1.1 5 23 175 193 173 194 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF20-201 - 532 1.8e-33 112.3 123.9 5 16 0.0064 13 7.0 2.5 1 23 199 221 199 222 0.77 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF20-201 - 532 1.8e-33 112.3 123.9 6 16 4.6e-06 0.0091 16.8 0.8 1 23 227 249 227 250 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF20-201 - 532 1.8e-33 112.3 123.9 7 16 6.7e-05 0.13 13.1 0.6 2 23 256 277 256 278 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF20-201 - 532 1.8e-33 112.3 123.9 8 16 8.4e-06 0.017 15.9 1.1 1 23 283 305 283 306 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF20-201 - 532 1.8e-33 112.3 123.9 9 16 0.0001 0.2 12.6 3.5 1 20 311 330 311 334 0.88 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF20-201 - 532 1.8e-33 112.3 123.9 10 16 2e-07 0.0004 21.0 2.4 1 23 339 361 339 362 0.97 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF20-201 - 532 1.8e-33 112.3 123.9 11 16 2.5e-06 0.005 17.6 1.3 2 23 368 389 367 390 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF20-201 - 532 1.8e-33 112.3 123.9 12 16 6.6e-06 0.013 16.3 2.3 1 23 395 417 395 418 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF20-201 - 532 1.8e-33 112.3 123.9 13 16 0.0001 0.2 12.6 3.7 1 23 423 445 423 446 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF20-201 - 532 1.8e-33 112.3 123.9 14 16 2e-06 0.004 17.9 2.4 1 23 451 473 451 474 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF20-201 - 532 1.8e-33 112.3 123.9 15 16 0.00012 0.24 12.3 1.8 1 23 479 500 479 501 0.88 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF20-201 - 532 1.8e-33 112.3 123.9 16 16 5.8e-05 0.12 13.3 2.1 1 23 506 528 506 529 0.96 C2H2-type zinc finger KRAB PF01352.27 42 ZNF20-201 - 532 6.6e-25 86.5 0.3 1 1 5.2e-28 1e-24 85.9 0.3 1 42 6 47 6 47 0.99 KRAB box zf-C2H2_6 PF13912.6 27 ZNF20-201 - 532 2.1e-12 46.7 120.9 1 14 3.4 6.7e+03 -2.7 0.1 7 12 82 87 81 88 0.91 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF20-201 - 532 2.1e-12 46.7 120.9 2 14 0.0054 11 6.2 0.8 5 20 146 161 146 165 0.85 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF20-201 - 532 2.1e-12 46.7 120.9 3 14 0.083 1.7e+02 2.4 2.6 2 11 199 208 199 209 0.95 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF20-201 - 532 2.1e-12 46.7 120.9 4 14 0.00029 0.57 10.2 0.6 2 17 227 242 227 251 0.75 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF20-201 - 532 2.1e-12 46.7 120.9 5 14 0.0071 14 5.8 2.4 3 24 256 277 256 280 0.87 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF20-201 - 532 2.1e-12 46.7 120.9 6 14 3.3e-05 0.066 13.2 1.3 2 24 283 305 283 308 0.86 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF20-201 - 532 2.1e-12 46.7 120.9 7 14 0.0013 2.6 8.2 5.6 2 24 311 333 311 336 0.91 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF20-201 - 532 2.1e-12 46.7 120.9 8 14 0.0051 10 6.3 2.9 2 24 339 361 339 363 0.88 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF20-201 - 532 2.1e-12 46.7 120.9 9 14 0.0065 13 5.9 0.8 2 12 367 377 367 391 0.87 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF20-201 - 532 2.1e-12 46.7 120.9 10 14 2.3e-08 4.5e-05 23.3 2.5 2 24 395 417 395 420 0.96 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF20-201 - 532 2.1e-12 46.7 120.9 11 14 1.2e-05 0.023 14.7 4.6 2 24 423 445 423 447 0.96 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF20-201 - 532 2.1e-12 46.7 120.9 12 14 0.00083 1.6 8.8 2.0 2 12 451 461 451 474 0.89 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF20-201 - 532 2.1e-12 46.7 120.9 13 14 0.011 21 5.3 0.8 2 11 479 488 479 490 0.92 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF20-201 - 532 2.1e-12 46.7 120.9 14 14 0.0068 14 5.9 2.3 2 24 506 528 506 529 0.73 C2H2-type zinc finger zf-trcl PF13451.6 48 ZNF20-201 - 532 8.7e-07 28.7 60.4 1 12 3 6e+03 -2.8 0.0 33 42 142 151 137 154 0.72 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF20-201 - 532 8.7e-07 28.7 60.4 2 12 0.0064 13 5.8 0.1 2 16 196 210 195 212 0.89 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF20-201 - 532 8.7e-07 28.7 60.4 3 12 0.0044 8.8 6.3 0.2 3 15 225 237 225 240 0.89 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF20-201 - 532 8.7e-07 28.7 60.4 4 12 0.022 45 4.1 0.3 7 17 257 267 254 269 0.88 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF20-201 - 532 8.7e-07 28.7 60.4 5 12 0.0023 4.5 7.2 3.6 3 41 281 318 279 321 0.82 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF20-201 - 532 8.7e-07 28.7 60.4 6 12 0.01 21 5.1 0.5 3 21 337 355 335 361 0.81 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF20-201 - 532 8.7e-07 28.7 60.4 7 12 0.003 5.9 6.9 0.4 1 14 363 376 363 385 0.91 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF20-201 - 532 8.7e-07 28.7 60.4 8 12 0.034 67 3.5 0.2 3 16 393 406 391 409 0.79 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF20-201 - 532 8.7e-07 28.7 60.4 9 12 0.015 29 4.7 0.1 3 17 421 435 419 437 0.80 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF20-201 - 532 8.7e-07 28.7 60.4 10 12 0.0022 4.3 7.3 0.3 2 15 448 461 447 467 0.90 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF20-201 - 532 8.7e-07 28.7 60.4 11 12 0.011 22 5.1 0.1 3 15 477 489 475 490 0.90 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF20-201 - 532 8.7e-07 28.7 60.4 12 12 0.0025 5 7.1 0.2 3 15 504 516 502 520 0.90 Probable zinc-ribbon domain # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF20-201.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF20-201.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF20-201.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF20-201.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF20-201.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:01:17 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF20-202.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF20-202.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF20-202.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF20-202.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF20-202.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:01:17 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF20-203.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF20-203.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF20-203.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF20-203.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF20-203.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:01:18 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- KRAB PF01352.27 42 ZNF20-204 - 52 9.1e-27 92.5 0.3 1 1 5.8e-31 1e-26 92.3 0.3 1 42 3 44 3 44 0.99 KRAB box # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF20-204.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF20-204.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF20-204.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF20-204.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF20-204.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:01:18 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF20-205.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF20-205.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF20-205.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF20-205.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF20-205.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:01:18 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- KRAB PF01352.27 42 ZNF20-206 - 82 2.8e-26 90.9 0.3 1 1 2.2e-30 4e-26 90.4 0.3 1 42 5 46 5 46 0.99 KRAB box # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF20-206.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF20-206.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF20-206.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF20-206.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF20-206.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:01:19 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF20-207.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF20-207.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF20-207.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF20-207.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF20-207.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:01:19 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- KRAB PF01352.27 42 ZNF20-208 - 131 7.6e-26 89.5 0.3 1 1 6.4e-30 1.2e-25 88.9 0.3 1 42 3 44 3 44 0.99 KRAB box # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF20-208.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF20-208.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF20-208.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF20-208.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF20-208.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:01:19 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- SCAN PF02023.17 90 ZNF202-201 - 648 2.9e-41 139.2 2.8 1 2 2.7e-44 2.9e-41 139.2 2.8 2 88 43 129 42 131 0.98 SCAN domain SCAN PF02023.17 90 ZNF202-201 - 648 2.9e-41 139.2 2.8 2 2 1.4 1.5e+03 -0.9 0.2 33 75 134 176 132 184 0.66 SCAN domain zf-H2C2_2 PF13465.6 26 ZNF202-201 - 648 2.5e-39 132.0 69.2 1 10 0.012 13 6.4 0.4 15 25 397 407 384 408 0.84 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF202-201 - 648 2.5e-39 132.0 69.2 2 10 1.6e-12 1.7e-09 37.7 2.7 1 26 411 436 411 436 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF202-201 - 648 2.5e-39 132.0 69.2 3 10 0.0075 7.9 7.1 0.7 1 19 439 457 439 460 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF202-201 - 648 2.5e-39 132.0 69.2 4 10 0.00023 0.24 11.9 0.4 11 24 477 490 472 491 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF202-201 - 648 2.5e-39 132.0 69.2 5 10 1.5e-11 1.5e-08 34.6 0.4 1 25 495 519 495 520 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF202-201 - 648 2.5e-39 132.0 69.2 6 10 1.6e-05 0.017 15.5 0.1 2 25 524 547 524 548 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF202-201 - 648 2.5e-39 132.0 69.2 7 10 0.0044 4.6 7.8 2.3 4 26 554 576 551 576 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF202-201 - 648 2.5e-39 132.0 69.2 8 10 0.00013 0.13 12.7 1.2 2 25 580 603 579 604 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF202-201 - 648 2.5e-39 132.0 69.2 9 10 4.7e-13 5e-10 39.4 2.5 1 25 607 631 607 632 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF202-201 - 648 2.5e-39 132.0 69.2 10 10 0.39 4.1e+02 1.7 1.4 1 12 635 646 635 648 0.83 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZNF202-201 - 648 1.2e-38 129.4 80.7 1 8 4e-06 0.0042 17.4 6.9 1 23 397 419 397 419 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF202-201 - 648 1.2e-38 129.4 80.7 2 8 5e-09 5.3e-06 26.6 3.1 1 23 425 447 425 447 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF202-201 - 648 1.2e-38 129.4 80.7 3 8 1.1e-07 0.00012 22.3 2.5 1 23 481 503 481 503 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF202-201 - 648 1.2e-38 129.4 80.7 4 8 3e-08 3.2e-05 24.2 1.3 1 23 509 531 509 531 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF202-201 - 648 1.2e-38 129.4 80.7 5 8 0.0028 3 8.5 1.2 1 23 537 559 537 559 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF202-201 - 648 1.2e-38 129.4 80.7 6 8 3.2e-06 0.0034 17.8 2.8 1 23 565 587 565 587 0.95 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF202-201 - 648 1.2e-38 129.4 80.7 7 8 4.8e-09 5.1e-06 26.7 6.2 2 23 594 615 593 615 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF202-201 - 648 1.2e-38 129.4 80.7 8 8 1.5e-09 1.5e-06 28.3 3.2 1 23 621 643 621 643 0.99 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZNF202-201 - 648 1.8e-23 81.2 72.6 1 8 8.5e-06 0.009 16.8 5.8 3 23 399 419 397 420 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF202-201 - 648 1.8e-23 81.2 72.6 2 8 2.6e-05 0.027 15.3 2.8 1 23 425 447 425 448 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF202-201 - 648 1.8e-23 81.2 72.6 3 8 0.00021 0.22 12.4 1.6 1 23 481 503 481 504 0.91 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF202-201 - 648 1.8e-23 81.2 72.6 4 8 7.9e-06 0.0083 16.9 1.0 1 23 509 531 509 532 0.88 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF202-201 - 648 1.8e-23 81.2 72.6 5 8 8.5e-05 0.09 13.7 0.6 1 23 537 559 537 560 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF202-201 - 648 1.8e-23 81.2 72.6 6 8 0.00056 0.59 11.1 2.2 1 23 565 587 565 588 0.90 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF202-201 - 648 1.8e-23 81.2 72.6 7 8 1.1e-05 0.012 16.4 4.6 2 23 594 615 593 616 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF202-201 - 648 1.8e-23 81.2 72.6 8 8 1.3e-06 0.0014 19.3 2.1 1 23 621 643 621 644 0.96 C2H2-type zinc finger KRAB PF01352.27 42 ZNF202-201 - 648 2.1e-13 49.7 0.1 1 1 4.8e-16 5e-13 48.5 0.1 1 41 236 277 236 277 0.96 KRAB box # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF202-201.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF202-201.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF202-201.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF202-201.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF202-201.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:01:20 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF202-202.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF202-202.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF202-202.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF202-202.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF202-202.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:01:20 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF202-203.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF202-203.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF202-203.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF202-203.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF202-203.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:01:20 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF202-204.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF202-204.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF202-204.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF202-204.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF202-204.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:01:22 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF202-205.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF202-205.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF202-205.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF202-205.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF202-205.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:01:22 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- SCAN PF02023.17 90 ZNF202-206 - 648 2.9e-41 139.2 2.8 1 2 2.7e-44 2.9e-41 139.2 2.8 2 88 43 129 42 131 0.98 SCAN domain SCAN PF02023.17 90 ZNF202-206 - 648 2.9e-41 139.2 2.8 2 2 1.4 1.5e+03 -0.9 0.2 33 75 134 176 132 184 0.66 SCAN domain zf-H2C2_2 PF13465.6 26 ZNF202-206 - 648 2.5e-39 132.0 69.2 1 10 0.012 13 6.4 0.4 15 25 397 407 384 408 0.84 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF202-206 - 648 2.5e-39 132.0 69.2 2 10 1.6e-12 1.7e-09 37.7 2.7 1 26 411 436 411 436 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF202-206 - 648 2.5e-39 132.0 69.2 3 10 0.0075 7.9 7.1 0.7 1 19 439 457 439 460 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF202-206 - 648 2.5e-39 132.0 69.2 4 10 0.00023 0.24 11.9 0.4 11 24 477 490 472 491 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF202-206 - 648 2.5e-39 132.0 69.2 5 10 1.5e-11 1.5e-08 34.6 0.4 1 25 495 519 495 520 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF202-206 - 648 2.5e-39 132.0 69.2 6 10 1.6e-05 0.017 15.5 0.1 2 25 524 547 524 548 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF202-206 - 648 2.5e-39 132.0 69.2 7 10 0.0044 4.6 7.8 2.3 4 26 554 576 551 576 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF202-206 - 648 2.5e-39 132.0 69.2 8 10 0.00013 0.13 12.7 1.2 2 25 580 603 579 604 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF202-206 - 648 2.5e-39 132.0 69.2 9 10 4.7e-13 5e-10 39.4 2.5 1 25 607 631 607 632 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF202-206 - 648 2.5e-39 132.0 69.2 10 10 0.39 4.1e+02 1.7 1.4 1 12 635 646 635 648 0.83 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZNF202-206 - 648 1.2e-38 129.4 80.7 1 8 4e-06 0.0042 17.4 6.9 1 23 397 419 397 419 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF202-206 - 648 1.2e-38 129.4 80.7 2 8 5e-09 5.3e-06 26.6 3.1 1 23 425 447 425 447 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF202-206 - 648 1.2e-38 129.4 80.7 3 8 1.1e-07 0.00012 22.3 2.5 1 23 481 503 481 503 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF202-206 - 648 1.2e-38 129.4 80.7 4 8 3e-08 3.2e-05 24.2 1.3 1 23 509 531 509 531 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF202-206 - 648 1.2e-38 129.4 80.7 5 8 0.0028 3 8.5 1.2 1 23 537 559 537 559 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF202-206 - 648 1.2e-38 129.4 80.7 6 8 3.2e-06 0.0034 17.8 2.8 1 23 565 587 565 587 0.95 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF202-206 - 648 1.2e-38 129.4 80.7 7 8 4.8e-09 5.1e-06 26.7 6.2 2 23 594 615 593 615 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF202-206 - 648 1.2e-38 129.4 80.7 8 8 1.5e-09 1.5e-06 28.3 3.2 1 23 621 643 621 643 0.99 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZNF202-206 - 648 1.8e-23 81.2 72.6 1 8 8.5e-06 0.009 16.8 5.8 3 23 399 419 397 420 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF202-206 - 648 1.8e-23 81.2 72.6 2 8 2.6e-05 0.027 15.3 2.8 1 23 425 447 425 448 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF202-206 - 648 1.8e-23 81.2 72.6 3 8 0.00021 0.22 12.4 1.6 1 23 481 503 481 504 0.91 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF202-206 - 648 1.8e-23 81.2 72.6 4 8 7.9e-06 0.0083 16.9 1.0 1 23 509 531 509 532 0.88 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF202-206 - 648 1.8e-23 81.2 72.6 5 8 8.5e-05 0.09 13.7 0.6 1 23 537 559 537 560 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF202-206 - 648 1.8e-23 81.2 72.6 6 8 0.00056 0.59 11.1 2.2 1 23 565 587 565 588 0.90 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF202-206 - 648 1.8e-23 81.2 72.6 7 8 1.1e-05 0.012 16.4 4.6 2 23 594 615 593 616 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF202-206 - 648 1.8e-23 81.2 72.6 8 8 1.3e-06 0.0014 19.3 2.1 1 23 621 643 621 644 0.96 C2H2-type zinc finger KRAB PF01352.27 42 ZNF202-206 - 648 2.1e-13 49.7 0.1 1 1 4.8e-16 5e-13 48.5 0.1 1 41 236 277 236 277 0.96 KRAB box # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF202-206.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF202-206.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF202-206.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF202-206.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF202-206.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:01:23 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- SCAN PF02023.17 90 ZNF202-207 - 648 2.9e-41 139.2 2.8 1 2 2.7e-44 2.9e-41 139.2 2.8 2 88 43 129 42 131 0.98 SCAN domain SCAN PF02023.17 90 ZNF202-207 - 648 2.9e-41 139.2 2.8 2 2 1.4 1.5e+03 -0.9 0.2 33 75 134 176 132 184 0.66 SCAN domain zf-H2C2_2 PF13465.6 26 ZNF202-207 - 648 2.5e-39 132.0 69.2 1 10 0.012 13 6.4 0.4 15 25 397 407 384 408 0.84 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF202-207 - 648 2.5e-39 132.0 69.2 2 10 1.6e-12 1.7e-09 37.7 2.7 1 26 411 436 411 436 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF202-207 - 648 2.5e-39 132.0 69.2 3 10 0.0075 7.9 7.1 0.7 1 19 439 457 439 460 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF202-207 - 648 2.5e-39 132.0 69.2 4 10 0.00023 0.24 11.9 0.4 11 24 477 490 472 491 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF202-207 - 648 2.5e-39 132.0 69.2 5 10 1.5e-11 1.5e-08 34.6 0.4 1 25 495 519 495 520 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF202-207 - 648 2.5e-39 132.0 69.2 6 10 1.6e-05 0.017 15.5 0.1 2 25 524 547 524 548 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF202-207 - 648 2.5e-39 132.0 69.2 7 10 0.0044 4.6 7.8 2.3 4 26 554 576 551 576 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF202-207 - 648 2.5e-39 132.0 69.2 8 10 0.00013 0.13 12.7 1.2 2 25 580 603 579 604 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF202-207 - 648 2.5e-39 132.0 69.2 9 10 4.7e-13 5e-10 39.4 2.5 1 25 607 631 607 632 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF202-207 - 648 2.5e-39 132.0 69.2 10 10 0.39 4.1e+02 1.7 1.4 1 12 635 646 635 648 0.83 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZNF202-207 - 648 1.2e-38 129.4 80.7 1 8 4e-06 0.0042 17.4 6.9 1 23 397 419 397 419 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF202-207 - 648 1.2e-38 129.4 80.7 2 8 5e-09 5.3e-06 26.6 3.1 1 23 425 447 425 447 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF202-207 - 648 1.2e-38 129.4 80.7 3 8 1.1e-07 0.00012 22.3 2.5 1 23 481 503 481 503 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF202-207 - 648 1.2e-38 129.4 80.7 4 8 3e-08 3.2e-05 24.2 1.3 1 23 509 531 509 531 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF202-207 - 648 1.2e-38 129.4 80.7 5 8 0.0028 3 8.5 1.2 1 23 537 559 537 559 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF202-207 - 648 1.2e-38 129.4 80.7 6 8 3.2e-06 0.0034 17.8 2.8 1 23 565 587 565 587 0.95 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF202-207 - 648 1.2e-38 129.4 80.7 7 8 4.8e-09 5.1e-06 26.7 6.2 2 23 594 615 593 615 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF202-207 - 648 1.2e-38 129.4 80.7 8 8 1.5e-09 1.5e-06 28.3 3.2 1 23 621 643 621 643 0.99 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZNF202-207 - 648 1.8e-23 81.2 72.6 1 8 8.5e-06 0.009 16.8 5.8 3 23 399 419 397 420 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF202-207 - 648 1.8e-23 81.2 72.6 2 8 2.6e-05 0.027 15.3 2.8 1 23 425 447 425 448 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF202-207 - 648 1.8e-23 81.2 72.6 3 8 0.00021 0.22 12.4 1.6 1 23 481 503 481 504 0.91 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF202-207 - 648 1.8e-23 81.2 72.6 4 8 7.9e-06 0.0083 16.9 1.0 1 23 509 531 509 532 0.88 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF202-207 - 648 1.8e-23 81.2 72.6 5 8 8.5e-05 0.09 13.7 0.6 1 23 537 559 537 560 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF202-207 - 648 1.8e-23 81.2 72.6 6 8 0.00056 0.59 11.1 2.2 1 23 565 587 565 588 0.90 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF202-207 - 648 1.8e-23 81.2 72.6 7 8 1.1e-05 0.012 16.4 4.6 2 23 594 615 593 616 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF202-207 - 648 1.8e-23 81.2 72.6 8 8 1.3e-06 0.0014 19.3 2.1 1 23 621 643 621 644 0.96 C2H2-type zinc finger KRAB PF01352.27 42 ZNF202-207 - 648 2.1e-13 49.7 0.1 1 1 4.8e-16 5e-13 48.5 0.1 1 41 236 277 236 277 0.96 KRAB box # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF202-207.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF202-207.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF202-207.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF202-207.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF202-207.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:01:23 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF202-208.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF202-208.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF202-208.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF202-208.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF202-208.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:01:23 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF202-209.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF202-209.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF202-209.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF202-209.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF202-209.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:01:24 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZNF205-201 - 554 1.1e-56 186.8 63.6 1 10 7.8 7.3e+03 -2.3 0.0 8 15 142 149 140 150 0.80 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF205-201 - 554 1.1e-56 186.8 63.6 2 10 0.0076 7.1 7.2 0.2 12 25 305 318 302 318 0.87 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF205-201 - 554 1.1e-56 186.8 63.6 3 10 1.9e-10 1.8e-07 31.3 1.6 1 25 322 346 322 347 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF205-201 - 554 1.1e-56 186.8 63.6 4 10 1.2e-11 1.2e-08 35.0 1.6 1 26 350 375 350 375 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF205-201 - 554 1.1e-56 186.8 63.6 5 10 6e-10 5.7e-07 29.7 0.3 3 26 380 403 379 403 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF205-201 - 554 1.1e-56 186.8 63.6 6 10 4.2e-09 4e-06 27.0 1.8 1 25 406 430 406 431 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF205-201 - 554 1.1e-56 186.8 63.6 7 10 6.5e-11 6.2e-08 32.7 1.3 1 25 434 458 434 459 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF205-201 - 554 1.1e-56 186.8 63.6 8 10 8e-10 7.5e-07 29.3 1.9 1 26 462 487 462 487 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF205-201 - 554 1.1e-56 186.8 63.6 9 10 1.2e-10 1.1e-07 32.0 0.9 1 25 490 514 490 515 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF205-201 - 554 1.1e-56 186.8 63.6 10 10 0.18 1.7e+02 2.9 0.4 1 13 518 531 518 534 0.84 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZNF205-201 - 554 1.2e-42 142.0 75.9 1 8 5.8e-06 0.0055 17.1 4.2 1 23 308 330 308 330 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF205-201 - 554 1.2e-42 142.0 75.9 2 8 3.6e-08 3.4e-05 24.0 0.7 1 23 336 358 336 358 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF205-201 - 554 1.2e-42 142.0 75.9 3 8 7.9e-07 0.00074 19.8 4.5 1 23 364 386 364 386 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF205-201 - 554 1.2e-42 142.0 75.9 4 8 8.7e-07 0.00082 19.7 0.9 1 23 392 414 392 414 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF205-201 - 554 1.2e-42 142.0 75.9 5 8 8.2e-08 7.7e-05 22.9 3.7 1 23 420 442 420 442 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF205-201 - 554 1.2e-42 142.0 75.9 6 8 1.8e-09 1.7e-06 28.2 1.3 1 23 448 470 448 470 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF205-201 - 554 1.2e-42 142.0 75.9 7 8 1.8e-08 1.7e-05 25.0 6.9 1 23 476 498 476 498 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF205-201 - 554 1.2e-42 142.0 75.9 8 8 8.1e-09 7.6e-06 26.1 1.9 1 23 504 526 504 526 0.97 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZNF205-201 - 554 7e-22 76.2 70.0 1 8 0.00014 0.14 13.1 3.5 1 23 308 330 308 331 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF205-201 - 554 7e-22 76.2 70.0 2 8 3e-05 0.029 15.2 0.4 1 23 336 358 336 359 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF205-201 - 554 7e-22 76.2 70.0 3 8 0.00021 0.2 12.6 3.2 1 23 364 386 364 387 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF205-201 - 554 7e-22 76.2 70.0 4 8 0.00021 0.2 12.6 0.5 1 23 392 414 392 415 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF205-201 - 554 7e-22 76.2 70.0 5 8 2.1e-05 0.02 15.7 3.4 1 23 420 442 420 443 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF205-201 - 554 7e-22 76.2 70.0 6 8 7.6e-05 0.072 14.0 1.3 1 23 448 470 448 471 0.88 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF205-201 - 554 7e-22 76.2 70.0 7 8 0.00073 0.69 10.9 5.7 1 23 476 498 476 499 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF205-201 - 554 7e-22 76.2 70.0 8 8 2.7e-07 0.00026 21.6 1.5 1 23 504 526 504 527 0.95 C2H2-type zinc finger KRAB PF01352.27 42 ZNF205-201 - 554 2.3e-13 49.6 0.0 1 1 4.4e-16 4.1e-13 48.7 0.0 1 33 123 155 123 161 0.94 KRAB box zf-C2H2_jaz PF12171.8 27 ZNF205-201 - 554 1.5e-12 47.4 32.7 1 8 0.0053 5 7.5 0.7 2 24 308 330 307 330 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF205-201 - 554 1.5e-12 47.4 32.7 2 8 0.045 43 4.6 0.0 2 21 336 355 335 356 0.91 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF205-201 - 554 1.5e-12 47.4 32.7 3 8 1.3e-05 0.012 15.9 0.2 2 22 364 384 363 384 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF205-201 - 554 1.5e-12 47.4 32.7 4 8 0.064 60 4.1 0.0 2 21 392 411 391 414 0.89 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF205-201 - 554 1.5e-12 47.4 32.7 5 8 0.0014 1.3 9.4 0.6 2 24 420 442 419 442 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF205-201 - 554 1.5e-12 47.4 32.7 6 8 0.26 2.4e+02 2.2 0.2 2 23 448 469 447 470 0.86 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF205-201 - 554 1.5e-12 47.4 32.7 7 8 0.0019 1.8 9.0 1.3 4 24 478 498 475 499 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF205-201 - 554 1.5e-12 47.4 32.7 8 8 0.0001 0.094 13.0 0.0 2 22 504 524 503 524 0.94 Zinc-finger double-stranded RNA-binding Zn-ribbon_8 PF09723.10 40 ZNF205-201 - 554 6.8e-10 38.9 30.4 1 5 0.00012 0.11 12.6 3.6 6 34 308 343 307 343 0.81 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF205-201 - 554 6.8e-10 38.9 30.4 2 5 1e-05 0.0098 16.0 0.4 6 34 336 371 335 375 0.84 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF205-201 - 554 6.8e-10 38.9 30.4 3 5 0.0003 0.28 11.3 1.3 6 33 392 426 391 431 0.86 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF205-201 - 554 6.8e-10 38.9 30.4 4 5 0.33 3.1e+02 1.6 7.1 8 34 425 455 422 461 0.65 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF205-201 - 554 6.8e-10 38.9 30.4 5 5 8.3e-06 0.0078 16.3 1.0 6 38 476 515 475 518 0.88 Zinc ribbon domain # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF205-201.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF205-201.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF205-201.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF205-201.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF205-201.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:01:24 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZNF205-202 - 554 1.1e-56 186.8 63.6 1 10 7.8 7.3e+03 -2.3 0.0 8 15 142 149 140 150 0.80 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF205-202 - 554 1.1e-56 186.8 63.6 2 10 0.0076 7.1 7.2 0.2 12 25 305 318 302 318 0.87 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF205-202 - 554 1.1e-56 186.8 63.6 3 10 1.9e-10 1.8e-07 31.3 1.6 1 25 322 346 322 347 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF205-202 - 554 1.1e-56 186.8 63.6 4 10 1.2e-11 1.2e-08 35.0 1.6 1 26 350 375 350 375 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF205-202 - 554 1.1e-56 186.8 63.6 5 10 6e-10 5.7e-07 29.7 0.3 3 26 380 403 379 403 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF205-202 - 554 1.1e-56 186.8 63.6 6 10 4.2e-09 4e-06 27.0 1.8 1 25 406 430 406 431 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF205-202 - 554 1.1e-56 186.8 63.6 7 10 6.5e-11 6.2e-08 32.7 1.3 1 25 434 458 434 459 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF205-202 - 554 1.1e-56 186.8 63.6 8 10 8e-10 7.5e-07 29.3 1.9 1 26 462 487 462 487 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF205-202 - 554 1.1e-56 186.8 63.6 9 10 1.2e-10 1.1e-07 32.0 0.9 1 25 490 514 490 515 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF205-202 - 554 1.1e-56 186.8 63.6 10 10 0.18 1.7e+02 2.9 0.4 1 13 518 531 518 534 0.84 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZNF205-202 - 554 1.2e-42 142.0 75.9 1 8 5.8e-06 0.0055 17.1 4.2 1 23 308 330 308 330 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF205-202 - 554 1.2e-42 142.0 75.9 2 8 3.6e-08 3.4e-05 24.0 0.7 1 23 336 358 336 358 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF205-202 - 554 1.2e-42 142.0 75.9 3 8 7.9e-07 0.00074 19.8 4.5 1 23 364 386 364 386 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF205-202 - 554 1.2e-42 142.0 75.9 4 8 8.7e-07 0.00082 19.7 0.9 1 23 392 414 392 414 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF205-202 - 554 1.2e-42 142.0 75.9 5 8 8.2e-08 7.7e-05 22.9 3.7 1 23 420 442 420 442 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF205-202 - 554 1.2e-42 142.0 75.9 6 8 1.8e-09 1.7e-06 28.2 1.3 1 23 448 470 448 470 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF205-202 - 554 1.2e-42 142.0 75.9 7 8 1.8e-08 1.7e-05 25.0 6.9 1 23 476 498 476 498 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF205-202 - 554 1.2e-42 142.0 75.9 8 8 8.1e-09 7.6e-06 26.1 1.9 1 23 504 526 504 526 0.97 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZNF205-202 - 554 7e-22 76.2 70.0 1 8 0.00014 0.14 13.1 3.5 1 23 308 330 308 331 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF205-202 - 554 7e-22 76.2 70.0 2 8 3e-05 0.029 15.2 0.4 1 23 336 358 336 359 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF205-202 - 554 7e-22 76.2 70.0 3 8 0.00021 0.2 12.6 3.2 1 23 364 386 364 387 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF205-202 - 554 7e-22 76.2 70.0 4 8 0.00021 0.2 12.6 0.5 1 23 392 414 392 415 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF205-202 - 554 7e-22 76.2 70.0 5 8 2.1e-05 0.02 15.7 3.4 1 23 420 442 420 443 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF205-202 - 554 7e-22 76.2 70.0 6 8 7.6e-05 0.072 14.0 1.3 1 23 448 470 448 471 0.88 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF205-202 - 554 7e-22 76.2 70.0 7 8 0.00073 0.69 10.9 5.7 1 23 476 498 476 499 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF205-202 - 554 7e-22 76.2 70.0 8 8 2.7e-07 0.00026 21.6 1.5 1 23 504 526 504 527 0.95 C2H2-type zinc finger KRAB PF01352.27 42 ZNF205-202 - 554 2.3e-13 49.6 0.0 1 1 4.4e-16 4.1e-13 48.7 0.0 1 33 123 155 123 161 0.94 KRAB box zf-C2H2_jaz PF12171.8 27 ZNF205-202 - 554 1.5e-12 47.4 32.7 1 8 0.0053 5 7.5 0.7 2 24 308 330 307 330 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF205-202 - 554 1.5e-12 47.4 32.7 2 8 0.045 43 4.6 0.0 2 21 336 355 335 356 0.91 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF205-202 - 554 1.5e-12 47.4 32.7 3 8 1.3e-05 0.012 15.9 0.2 2 22 364 384 363 384 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF205-202 - 554 1.5e-12 47.4 32.7 4 8 0.064 60 4.1 0.0 2 21 392 411 391 414 0.89 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF205-202 - 554 1.5e-12 47.4 32.7 5 8 0.0014 1.3 9.4 0.6 2 24 420 442 419 442 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF205-202 - 554 1.5e-12 47.4 32.7 6 8 0.26 2.4e+02 2.2 0.2 2 23 448 469 447 470 0.86 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF205-202 - 554 1.5e-12 47.4 32.7 7 8 0.0019 1.8 9.0 1.3 4 24 478 498 475 499 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF205-202 - 554 1.5e-12 47.4 32.7 8 8 0.0001 0.094 13.0 0.0 2 22 504 524 503 524 0.94 Zinc-finger double-stranded RNA-binding Zn-ribbon_8 PF09723.10 40 ZNF205-202 - 554 6.8e-10 38.9 30.4 1 5 0.00012 0.11 12.6 3.6 6 34 308 343 307 343 0.81 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF205-202 - 554 6.8e-10 38.9 30.4 2 5 1e-05 0.0098 16.0 0.4 6 34 336 371 335 375 0.84 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF205-202 - 554 6.8e-10 38.9 30.4 3 5 0.0003 0.28 11.3 1.3 6 33 392 426 391 431 0.86 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF205-202 - 554 6.8e-10 38.9 30.4 4 5 0.33 3.1e+02 1.6 7.1 8 34 425 455 422 461 0.65 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF205-202 - 554 6.8e-10 38.9 30.4 5 5 8.3e-06 0.0078 16.3 1.0 6 38 476 515 475 518 0.88 Zinc ribbon domain # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF205-202.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF205-202.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF205-202.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF205-202.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF205-202.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:01:25 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF205-203.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF205-203.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF205-203.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF205-203.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF205-203.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:01:25 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF205-204.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF205-204.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF205-204.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF205-204.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF205-204.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:01:25 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF205-205.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF205-205.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF205-205.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF205-205.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF205-205.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:01:26 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZNF205-206 - 554 1.1e-56 186.8 63.6 1 10 7.8 7.3e+03 -2.3 0.0 8 15 142 149 140 150 0.80 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF205-206 - 554 1.1e-56 186.8 63.6 2 10 0.0076 7.1 7.2 0.2 12 25 305 318 302 318 0.87 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF205-206 - 554 1.1e-56 186.8 63.6 3 10 1.9e-10 1.8e-07 31.3 1.6 1 25 322 346 322 347 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF205-206 - 554 1.1e-56 186.8 63.6 4 10 1.2e-11 1.2e-08 35.0 1.6 1 26 350 375 350 375 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF205-206 - 554 1.1e-56 186.8 63.6 5 10 6e-10 5.7e-07 29.7 0.3 3 26 380 403 379 403 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF205-206 - 554 1.1e-56 186.8 63.6 6 10 4.2e-09 4e-06 27.0 1.8 1 25 406 430 406 431 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF205-206 - 554 1.1e-56 186.8 63.6 7 10 6.5e-11 6.2e-08 32.7 1.3 1 25 434 458 434 459 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF205-206 - 554 1.1e-56 186.8 63.6 8 10 8e-10 7.5e-07 29.3 1.9 1 26 462 487 462 487 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF205-206 - 554 1.1e-56 186.8 63.6 9 10 1.2e-10 1.1e-07 32.0 0.9 1 25 490 514 490 515 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF205-206 - 554 1.1e-56 186.8 63.6 10 10 0.18 1.7e+02 2.9 0.4 1 13 518 531 518 534 0.84 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZNF205-206 - 554 1.2e-42 142.0 75.9 1 8 5.8e-06 0.0055 17.1 4.2 1 23 308 330 308 330 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF205-206 - 554 1.2e-42 142.0 75.9 2 8 3.6e-08 3.4e-05 24.0 0.7 1 23 336 358 336 358 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF205-206 - 554 1.2e-42 142.0 75.9 3 8 7.9e-07 0.00074 19.8 4.5 1 23 364 386 364 386 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF205-206 - 554 1.2e-42 142.0 75.9 4 8 8.7e-07 0.00082 19.7 0.9 1 23 392 414 392 414 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF205-206 - 554 1.2e-42 142.0 75.9 5 8 8.2e-08 7.7e-05 22.9 3.7 1 23 420 442 420 442 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF205-206 - 554 1.2e-42 142.0 75.9 6 8 1.8e-09 1.7e-06 28.2 1.3 1 23 448 470 448 470 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF205-206 - 554 1.2e-42 142.0 75.9 7 8 1.8e-08 1.7e-05 25.0 6.9 1 23 476 498 476 498 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF205-206 - 554 1.2e-42 142.0 75.9 8 8 8.1e-09 7.6e-06 26.1 1.9 1 23 504 526 504 526 0.97 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZNF205-206 - 554 7e-22 76.2 70.0 1 8 0.00014 0.14 13.1 3.5 1 23 308 330 308 331 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF205-206 - 554 7e-22 76.2 70.0 2 8 3e-05 0.029 15.2 0.4 1 23 336 358 336 359 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF205-206 - 554 7e-22 76.2 70.0 3 8 0.00021 0.2 12.6 3.2 1 23 364 386 364 387 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF205-206 - 554 7e-22 76.2 70.0 4 8 0.00021 0.2 12.6 0.5 1 23 392 414 392 415 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF205-206 - 554 7e-22 76.2 70.0 5 8 2.1e-05 0.02 15.7 3.4 1 23 420 442 420 443 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF205-206 - 554 7e-22 76.2 70.0 6 8 7.6e-05 0.072 14.0 1.3 1 23 448 470 448 471 0.88 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF205-206 - 554 7e-22 76.2 70.0 7 8 0.00073 0.69 10.9 5.7 1 23 476 498 476 499 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF205-206 - 554 7e-22 76.2 70.0 8 8 2.7e-07 0.00026 21.6 1.5 1 23 504 526 504 527 0.95 C2H2-type zinc finger KRAB PF01352.27 42 ZNF205-206 - 554 2.3e-13 49.6 0.0 1 1 4.4e-16 4.1e-13 48.7 0.0 1 33 123 155 123 161 0.94 KRAB box zf-C2H2_jaz PF12171.8 27 ZNF205-206 - 554 1.5e-12 47.4 32.7 1 8 0.0053 5 7.5 0.7 2 24 308 330 307 330 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF205-206 - 554 1.5e-12 47.4 32.7 2 8 0.045 43 4.6 0.0 2 21 336 355 335 356 0.91 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF205-206 - 554 1.5e-12 47.4 32.7 3 8 1.3e-05 0.012 15.9 0.2 2 22 364 384 363 384 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF205-206 - 554 1.5e-12 47.4 32.7 4 8 0.064 60 4.1 0.0 2 21 392 411 391 414 0.89 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF205-206 - 554 1.5e-12 47.4 32.7 5 8 0.0014 1.3 9.4 0.6 2 24 420 442 419 442 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF205-206 - 554 1.5e-12 47.4 32.7 6 8 0.26 2.4e+02 2.2 0.2 2 23 448 469 447 470 0.86 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF205-206 - 554 1.5e-12 47.4 32.7 7 8 0.0019 1.8 9.0 1.3 4 24 478 498 475 499 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF205-206 - 554 1.5e-12 47.4 32.7 8 8 0.0001 0.094 13.0 0.0 2 22 504 524 503 524 0.94 Zinc-finger double-stranded RNA-binding Zn-ribbon_8 PF09723.10 40 ZNF205-206 - 554 6.8e-10 38.9 30.4 1 5 0.00012 0.11 12.6 3.6 6 34 308 343 307 343 0.81 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF205-206 - 554 6.8e-10 38.9 30.4 2 5 1e-05 0.0098 16.0 0.4 6 34 336 371 335 375 0.84 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF205-206 - 554 6.8e-10 38.9 30.4 3 5 0.0003 0.28 11.3 1.3 6 33 392 426 391 431 0.86 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF205-206 - 554 6.8e-10 38.9 30.4 4 5 0.33 3.1e+02 1.6 7.1 8 34 425 455 422 461 0.65 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF205-206 - 554 6.8e-10 38.9 30.4 5 5 8.3e-06 0.0078 16.3 1.0 6 38 476 515 475 518 0.88 Zinc ribbon domain # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF205-206.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF205-206.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF205-206.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF205-206.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF205-206.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:01:26 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZNF211-201 - 577 6.7e-91 295.0 93.9 1 17 0.89 1.1e+03 0.4 0.6 5 17 137 153 136 155 0.84 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF211-201 - 577 6.7e-91 295.0 93.9 2 17 0.098 1.2e+02 3.4 0.1 1 15 162 176 162 179 0.90 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF211-201 - 577 6.7e-91 295.0 93.9 3 17 0.047 56 4.4 0.1 7 18 190 201 184 207 0.84 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF211-201 - 577 6.7e-91 295.0 93.9 4 17 1.7 2e+03 -0.5 0.0 8 24 219 235 214 237 0.76 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF211-201 - 577 6.7e-91 295.0 93.9 5 17 1.2 1.4e+03 -0.0 0.1 19 26 246 253 244 253 0.90 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF211-201 - 577 6.7e-91 295.0 93.9 6 17 0.0034 4 8.0 0.3 12 25 267 280 263 281 0.83 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF211-201 - 577 6.7e-91 295.0 93.9 7 17 7e-09 8.4e-06 26.0 0.7 1 25 284 308 284 309 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF211-201 - 577 6.7e-91 295.0 93.9 8 17 6.3e-11 7.5e-08 32.5 0.3 5 25 316 336 313 337 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF211-201 - 577 6.7e-91 295.0 93.9 9 17 2.4e-11 2.9e-08 33.8 0.3 1 25 340 364 340 365 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF211-201 - 577 6.7e-91 295.0 93.9 10 17 7.7e-13 9.3e-10 38.5 0.3 1 25 368 392 368 393 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF211-201 - 577 6.7e-91 295.0 93.9 11 17 2.1e-11 2.5e-08 34.0 0.7 2 25 397 420 396 421 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF211-201 - 577 6.7e-91 295.0 93.9 12 17 3.8e-11 4.6e-08 33.1 1.8 3 26 426 449 424 449 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF211-201 - 577 6.7e-91 295.0 93.9 13 17 8.5e-10 1e-06 28.9 1.6 2 26 453 477 452 477 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF211-201 - 577 6.7e-91 295.0 93.9 14 17 2e-11 2.4e-08 34.0 1.3 1 25 480 504 480 505 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF211-201 - 577 6.7e-91 295.0 93.9 15 17 9.1e-13 1.1e-09 38.3 0.2 1 25 508 532 508 533 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF211-201 - 577 6.7e-91 295.0 93.9 16 17 4.5e-11 5.4e-08 32.9 1.0 2 25 537 560 536 561 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF211-201 - 577 6.7e-91 295.0 93.9 17 17 0.017 21 5.8 0.1 3 14 566 577 565 577 0.89 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZNF211-201 - 577 1.1e-62 205.1 109.2 1 13 0.00017 0.2 12.2 1.1 4 23 151 170 145 170 0.89 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF211-201 - 577 1.1e-62 205.1 109.2 2 13 0.4 4.8e+02 1.5 0.0 5 17 246 258 243 259 0.85 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF211-201 - 577 1.1e-62 205.1 109.2 3 13 3.7e-06 0.0044 17.4 4.5 1 23 270 292 270 292 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF211-201 - 577 1.1e-62 205.1 109.2 4 13 2e-07 0.00024 21.4 1.1 1 23 298 320 298 320 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF211-201 - 577 1.1e-62 205.1 109.2 5 13 1.9e-08 2.3e-05 24.6 0.4 1 23 326 348 326 348 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF211-201 - 577 1.1e-62 205.1 109.2 6 13 3.9e-10 4.7e-07 29.9 0.7 1 23 354 376 354 376 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF211-201 - 577 1.1e-62 205.1 109.2 7 13 1.6e-08 2e-05 24.8 0.8 1 23 382 404 382 404 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF211-201 - 577 1.1e-62 205.1 109.2 8 13 1.5e-08 1.7e-05 25.0 4.3 1 23 410 432 410 432 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF211-201 - 577 1.1e-62 205.1 109.2 9 13 5.6e-08 6.6e-05 23.1 2.9 1 23 438 460 438 460 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF211-201 - 577 1.1e-62 205.1 109.2 10 13 1.5e-10 1.8e-07 31.3 1.7 1 23 466 488 466 488 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF211-201 - 577 1.1e-62 205.1 109.2 11 13 1.2e-06 0.0015 18.9 2.4 2 23 495 516 494 516 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF211-201 - 577 1.1e-62 205.1 109.2 12 13 1.9e-09 2.2e-06 27.8 0.7 1 23 522 544 522 544 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF211-201 - 577 1.1e-62 205.1 109.2 13 13 2.1e-05 0.025 15.0 1.7 1 23 550 572 550 572 0.99 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZNF211-201 - 577 1.3e-35 118.9 106.6 1 13 0.49 5.9e+02 1.8 0.3 3 19 125 141 124 144 0.85 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF211-201 - 577 1.3e-35 118.9 106.6 2 13 0.05 60 4.9 0.5 6 23 153 170 145 171 0.82 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF211-201 - 577 1.3e-35 118.9 106.6 3 13 0.0014 1.7 9.7 4.5 1 23 270 292 270 293 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF211-201 - 577 1.3e-35 118.9 106.6 4 13 0.00054 0.65 11.0 0.9 1 23 298 320 298 321 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF211-201 - 577 1.3e-35 118.9 106.6 5 13 5.7e-07 0.00068 20.3 0.5 1 23 326 348 326 349 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF211-201 - 577 1.3e-35 118.9 106.6 6 13 4.5e-06 0.0054 17.5 0.6 1 23 354 376 354 377 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF211-201 - 577 1.3e-35 118.9 106.6 7 13 9.7e-06 0.012 16.4 0.9 1 23 382 404 382 405 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF211-201 - 577 1.3e-35 118.9 106.6 8 13 1.2e-05 0.014 16.1 3.4 1 23 410 432 410 433 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF211-201 - 577 1.3e-35 118.9 106.6 9 13 1.2e-05 0.014 16.2 2.9 1 23 438 460 438 461 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF211-201 - 577 1.3e-35 118.9 106.6 10 13 1.3e-05 0.016 16.0 1.5 1 23 466 488 466 489 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF211-201 - 577 1.3e-35 118.9 106.6 11 13 2e-06 0.0024 18.6 2.7 2 23 495 516 494 517 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF211-201 - 577 1.3e-35 118.9 106.6 12 13 1.2e-06 0.0015 19.2 0.8 1 23 522 544 522 545 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF211-201 - 577 1.3e-35 118.9 106.6 13 13 4.7e-06 0.0056 17.4 1.5 1 23 550 572 550 573 0.93 C2H2-type zinc finger KRAB PF01352.27 42 ZNF211-201 - 577 4.8e-22 77.3 1.4 1 1 8.2e-25 9.7e-22 76.3 1.4 1 42 45 86 45 86 0.99 KRAB box zf-C2H2_6 PF13912.6 27 ZNF211-201 - 577 6.1e-21 73.9 102.6 1 13 0.89 1.1e+03 -0.2 0.5 6 22 152 168 151 170 0.62 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF211-201 - 577 6.1e-21 73.9 102.6 2 13 2.7 3.2e+03 -1.7 0.0 7 13 247 253 246 257 0.79 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF211-201 - 577 6.1e-21 73.9 102.6 3 13 0.19 2.2e+02 2.0 2.8 2 9 270 277 269 294 0.86 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF211-201 - 577 6.1e-21 73.9 102.6 4 13 0.00071 0.85 9.7 1.6 2 16 298 312 298 321 0.83 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF211-201 - 577 6.1e-21 73.9 102.6 5 13 1.1e-08 1.3e-05 25.0 0.5 2 24 326 348 326 351 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF211-201 - 577 6.1e-21 73.9 102.6 6 13 2.4e-05 0.029 14.4 0.9 2 24 354 376 354 379 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF211-201 - 577 6.1e-21 73.9 102.6 7 13 7e-05 0.083 12.9 1.0 2 12 382 392 382 405 0.85 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF211-201 - 577 6.1e-21 73.9 102.6 8 13 3e-06 0.0036 17.3 3.1 2 24 410 432 410 435 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF211-201 - 577 6.1e-21 73.9 102.6 9 13 0.0014 1.6 8.8 2.7 2 12 438 448 438 461 0.83 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF211-201 - 577 6.1e-21 73.9 102.6 10 13 0.0072 8.6 6.5 1.4 2 12 466 476 466 489 0.79 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF211-201 - 577 6.1e-21 73.9 102.6 11 13 0.0001 0.13 12.3 3.0 3 24 495 516 495 519 0.92 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF211-201 - 577 6.1e-21 73.9 102.6 12 13 2e-06 0.0024 17.8 1.6 2 24 522 544 522 547 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF211-201 - 577 6.1e-21 73.9 102.6 13 13 0.0014 1.7 8.8 2.0 2 12 550 560 550 572 0.83 C2H2-type zinc finger Zn-ribbon_8 PF09723.10 40 ZNF211-201 - 577 5.6e-11 42.4 57.3 1 9 5.2 6.2e+03 -2.6 0.0 10 16 152 158 151 169 0.76 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF211-201 - 577 5.6e-11 42.4 57.3 2 9 0.1 1.2e+02 2.9 0.8 6 38 270 281 246 295 0.75 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF211-201 - 577 5.6e-11 42.4 57.3 3 9 7e-07 0.00084 19.4 1.6 6 36 298 335 297 339 0.88 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF211-201 - 577 5.6e-11 42.4 57.3 4 9 0.0031 3.7 7.8 0.2 6 19 354 367 353 377 0.82 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF211-201 - 577 5.6e-11 42.4 57.3 5 9 1.8e-05 0.022 14.9 2.4 6 38 382 421 381 423 0.88 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF211-201 - 577 5.6e-11 42.4 57.3 6 9 0.0013 1.6 8.9 0.3 6 22 438 454 437 460 0.83 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF211-201 - 577 5.6e-11 42.4 57.3 7 9 0.0018 2.2 8.5 4.1 6 34 466 501 465 505 0.87 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF211-201 - 577 5.6e-11 42.4 57.3 8 9 0.00047 0.56 10.4 4.2 6 34 522 557 521 559 0.82 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF211-201 - 577 5.6e-11 42.4 57.3 9 9 0.023 28 5.0 0.7 6 15 550 559 549 568 0.90 Zinc ribbon domain zf_UBZ PF18439.1 32 ZNF211-201 - 577 3e-10 39.5 61.0 1 12 0.14 1.7e+02 1.9 0.2 8 21 153 167 151 171 0.90 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF211-201 - 577 3e-10 39.5 61.0 2 12 0.16 1.9e+02 1.8 1.9 3 11 270 278 268 289 0.84 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF211-201 - 577 3e-10 39.5 61.0 3 12 0.092 1.1e+02 2.5 0.3 3 12 298 307 296 308 0.87 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF211-201 - 577 3e-10 39.5 61.0 4 12 0.00026 0.31 10.7 0.1 3 20 326 344 324 345 0.88 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF211-201 - 577 3e-10 39.5 61.0 5 12 0.0028 3.3 7.4 0.1 3 20 354 372 352 373 0.85 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF211-201 - 577 3e-10 39.5 61.0 6 12 0.00097 1.2 8.8 0.1 3 15 382 394 380 401 0.81 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF211-201 - 577 3e-10 39.5 61.0 7 12 0.022 26 4.5 0.5 4 16 411 423 409 428 0.79 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF211-201 - 577 3e-10 39.5 61.0 8 12 0.00034 0.41 10.3 0.2 3 20 438 456 436 457 0.90 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF211-201 - 577 3e-10 39.5 61.0 9 12 0.00071 0.85 9.3 0.1 3 20 466 484 464 485 0.82 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF211-201 - 577 3e-10 39.5 61.0 10 12 0.046 55 3.5 0.8 4 14 495 505 493 513 0.82 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF211-201 - 577 3e-10 39.5 61.0 11 12 0.00027 0.32 10.6 0.2 3 20 522 540 520 541 0.86 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF211-201 - 577 3e-10 39.5 61.0 12 12 0.0069 8.2 6.1 0.6 3 12 550 559 548 568 0.90 Ubiquitin-Binding Zinc Finger zf-C2H2_jaz PF12171.8 27 ZNF211-201 - 577 1.7e-07 31.3 48.0 1 11 0.27 3.2e+02 1.8 0.6 6 22 152 168 151 171 0.89 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF211-201 - 577 1.7e-07 31.3 48.0 2 11 0.76 9.1e+02 0.3 0.4 2 11 298 307 297 308 0.89 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF211-201 - 577 1.7e-07 31.3 48.0 3 11 0.0068 8.1 6.9 0.1 2 22 326 346 325 346 0.90 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF211-201 - 577 1.7e-07 31.3 48.0 4 11 0.0057 6.8 7.1 0.0 2 21 354 373 353 374 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF211-201 - 577 1.7e-07 31.3 48.0 5 11 0.062 74 3.8 0.3 2 14 382 394 381 402 0.76 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF211-201 - 577 1.7e-07 31.3 48.0 6 11 0.0084 10 6.6 0.1 2 20 410 428 409 430 0.86 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF211-201 - 577 1.7e-07 31.3 48.0 7 11 0.031 37 4.7 0.4 2 22 438 458 437 458 0.91 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF211-201 - 577 1.7e-07 31.3 48.0 8 11 0.00011 0.13 12.6 0.1 2 22 466 486 465 486 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF211-201 - 577 1.7e-07 31.3 48.0 9 11 0.02 24 5.3 0.6 3 22 495 514 493 514 0.90 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF211-201 - 577 1.7e-07 31.3 48.0 10 11 0.0011 1.4 9.3 0.0 2 21 522 541 521 542 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF211-201 - 577 1.7e-07 31.3 48.0 11 11 0.57 6.8e+02 0.7 0.4 4 21 552 569 549 570 0.85 Zinc-finger double-stranded RNA-binding # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF211-201.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF211-201.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF211-201.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF211-201.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF211-201.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:01:27 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZNF211-202 - 555 3.2e-91 296.0 93.9 1 17 0.85 1e+03 0.4 0.6 5 17 115 131 114 133 0.84 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF211-202 - 555 3.2e-91 296.0 93.9 2 17 0.094 1.1e+02 3.5 0.1 1 15 140 154 140 157 0.90 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF211-202 - 555 3.2e-91 296.0 93.9 3 17 0.045 54 4.5 0.1 7 18 168 179 162 185 0.84 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF211-202 - 555 3.2e-91 296.0 93.9 4 17 1.6 1.9e+03 -0.5 0.0 8 24 197 213 192 215 0.76 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF211-202 - 555 3.2e-91 296.0 93.9 5 17 1.2 1.4e+03 0.0 0.1 19 26 224 231 222 231 0.90 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF211-202 - 555 3.2e-91 296.0 93.9 6 17 0.0032 3.9 8.1 0.3 12 25 245 258 241 259 0.83 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF211-202 - 555 3.2e-91 296.0 93.9 7 17 6.7e-09 8e-06 26.1 0.7 1 25 262 286 262 287 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF211-202 - 555 3.2e-91 296.0 93.9 8 17 6e-11 7.2e-08 32.5 0.3 5 25 294 314 291 315 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF211-202 - 555 3.2e-91 296.0 93.9 9 17 2.3e-11 2.8e-08 33.8 0.3 1 25 318 342 318 343 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF211-202 - 555 3.2e-91 296.0 93.9 10 17 7.4e-13 8.8e-10 38.6 0.3 1 25 346 370 346 371 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF211-202 - 555 3.2e-91 296.0 93.9 11 17 2e-11 2.4e-08 34.1 0.7 2 25 375 398 374 399 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF211-202 - 555 3.2e-91 296.0 93.9 12 17 3.7e-11 4.4e-08 33.2 1.8 3 26 404 427 402 427 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF211-202 - 555 3.2e-91 296.0 93.9 13 17 8.1e-10 9.7e-07 29.0 1.6 2 26 431 455 430 455 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF211-202 - 555 3.2e-91 296.0 93.9 14 17 1.9e-11 2.3e-08 34.1 1.3 1 25 458 482 458 483 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF211-202 - 555 3.2e-91 296.0 93.9 15 17 8.7e-13 1e-09 38.3 0.2 1 25 486 510 486 511 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF211-202 - 555 3.2e-91 296.0 93.9 16 17 4.3e-11 5.1e-08 33.0 1.0 2 25 515 538 514 539 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF211-202 - 555 3.2e-91 296.0 93.9 17 17 0.017 20 5.8 0.1 3 14 544 555 543 555 0.89 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZNF211-202 - 555 6e-63 206.0 109.2 1 13 0.00016 0.19 12.2 1.1 4 23 129 148 123 148 0.89 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF211-202 - 555 6e-63 206.0 109.2 2 13 0.38 4.6e+02 1.6 0.0 5 17 224 236 221 237 0.85 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF211-202 - 555 6e-63 206.0 109.2 3 13 3.5e-06 0.0042 17.5 4.5 1 23 248 270 248 270 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF211-202 - 555 6e-63 206.0 109.2 4 13 1.9e-07 0.00023 21.4 1.1 1 23 276 298 276 298 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF211-202 - 555 6e-63 206.0 109.2 5 13 1.8e-08 2.2e-05 24.7 0.4 1 23 304 326 304 326 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF211-202 - 555 6e-63 206.0 109.2 6 13 3.8e-10 4.5e-07 30.0 0.7 1 23 332 354 332 354 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF211-202 - 555 6e-63 206.0 109.2 7 13 1.6e-08 1.9e-05 24.9 0.8 1 23 360 382 360 382 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF211-202 - 555 6e-63 206.0 109.2 8 13 1.4e-08 1.7e-05 25.0 4.3 1 23 388 410 388 410 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF211-202 - 555 6e-63 206.0 109.2 9 13 5.3e-08 6.3e-05 23.2 2.9 1 23 416 438 416 438 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF211-202 - 555 6e-63 206.0 109.2 10 13 1.4e-10 1.7e-07 31.3 1.7 1 23 444 466 444 466 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF211-202 - 555 6e-63 206.0 109.2 11 13 1.2e-06 0.0014 18.9 2.4 2 23 473 494 472 494 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF211-202 - 555 6e-63 206.0 109.2 12 13 1.8e-09 2.1e-06 27.8 0.7 1 23 500 522 500 522 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF211-202 - 555 6e-63 206.0 109.2 13 13 2e-05 0.024 15.1 1.7 1 23 528 550 528 550 0.99 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZNF211-202 - 555 7e-36 119.8 106.6 1 13 0.47 5.6e+02 1.9 0.3 3 19 103 119 102 122 0.85 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF211-202 - 555 7e-36 119.8 106.6 2 13 0.048 57 4.9 0.5 6 23 131 148 123 149 0.82 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF211-202 - 555 7e-36 119.8 106.6 3 13 0.0014 1.6 9.7 4.5 1 23 248 270 248 271 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF211-202 - 555 7e-36 119.8 106.6 4 13 0.00052 0.62 11.1 0.9 1 23 276 298 276 299 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF211-202 - 555 7e-36 119.8 106.6 5 13 5.4e-07 0.00065 20.3 0.5 1 23 304 326 304 327 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF211-202 - 555 7e-36 119.8 106.6 6 13 4.3e-06 0.0051 17.5 0.6 1 23 332 354 332 355 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF211-202 - 555 7e-36 119.8 106.6 7 13 9.2e-06 0.011 16.5 0.9 1 23 360 382 360 383 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF211-202 - 555 7e-36 119.8 106.6 8 13 1.2e-05 0.014 16.2 3.4 1 23 388 410 388 411 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF211-202 - 555 7e-36 119.8 106.6 9 13 1.1e-05 0.013 16.2 2.9 1 23 416 438 416 439 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF211-202 - 555 7e-36 119.8 106.6 10 13 1.3e-05 0.015 16.1 1.5 1 23 444 466 444 467 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF211-202 - 555 7e-36 119.8 106.6 11 13 1.9e-06 0.0023 18.6 2.7 2 23 473 494 472 495 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF211-202 - 555 7e-36 119.8 106.6 12 13 1.2e-06 0.0014 19.3 0.8 1 23 500 522 500 523 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF211-202 - 555 7e-36 119.8 106.6 13 13 4.5e-06 0.0054 17.5 1.5 1 23 528 550 528 551 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF211-202 - 555 3.5e-21 74.7 102.6 1 13 0.85 1e+03 -0.1 0.5 6 22 130 146 129 148 0.63 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF211-202 - 555 3.5e-21 74.7 102.6 2 13 2.6 3.1e+03 -1.7 0.0 7 13 225 231 224 235 0.79 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF211-202 - 555 3.5e-21 74.7 102.6 3 13 0.18 2.1e+02 2.0 2.8 2 9 248 255 247 272 0.86 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF211-202 - 555 3.5e-21 74.7 102.6 4 13 0.00068 0.81 9.8 1.6 2 16 276 290 276 299 0.83 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF211-202 - 555 3.5e-21 74.7 102.6 5 13 1.1e-08 1.3e-05 25.1 0.5 2 24 304 326 304 329 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF211-202 - 555 3.5e-21 74.7 102.6 6 13 2.3e-05 0.027 14.4 0.9 2 24 332 354 332 357 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF211-202 - 555 3.5e-21 74.7 102.6 7 13 6.7e-05 0.08 13.0 1.0 2 12 360 370 360 383 0.85 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF211-202 - 555 3.5e-21 74.7 102.6 8 13 2.9e-06 0.0034 17.3 3.1 2 24 388 410 388 413 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF211-202 - 555 3.5e-21 74.7 102.6 9 13 0.0013 1.6 8.9 2.7 2 12 416 426 416 439 0.83 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF211-202 - 555 3.5e-21 74.7 102.6 10 13 0.0069 8.3 6.5 1.4 2 12 444 454 444 467 0.79 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF211-202 - 555 3.5e-21 74.7 102.6 11 13 0.0001 0.12 12.4 3.0 3 24 473 494 473 497 0.92 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF211-202 - 555 3.5e-21 74.7 102.6 12 13 1.9e-06 0.0023 17.9 1.6 2 24 500 522 500 525 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF211-202 - 555 3.5e-21 74.7 102.6 13 13 0.0013 1.6 8.8 2.0 2 12 528 538 528 550 0.83 C2H2-type zinc finger Zn-ribbon_8 PF09723.10 40 ZNF211-202 - 555 3.8e-11 42.9 57.3 1 9 5 6e+03 -2.5 0.0 10 16 130 136 129 147 0.76 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF211-202 - 555 3.8e-11 42.9 57.3 2 9 0.1 1.2e+02 2.9 0.8 6 38 248 259 224 273 0.75 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF211-202 - 555 3.8e-11 42.9 57.3 3 9 6.7e-07 0.0008 19.5 1.6 6 36 276 313 275 317 0.88 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF211-202 - 555 3.8e-11 42.9 57.3 4 9 0.0029 3.5 7.8 0.2 6 19 332 345 331 355 0.82 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF211-202 - 555 3.8e-11 42.9 57.3 5 9 1.8e-05 0.021 14.9 2.4 6 38 360 399 359 401 0.88 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF211-202 - 555 3.8e-11 42.9 57.3 6 9 0.0013 1.5 9.0 0.3 6 22 416 432 415 438 0.83 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF211-202 - 555 3.8e-11 42.9 57.3 7 9 0.0017 2.1 8.6 4.1 6 34 444 479 443 483 0.87 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF211-202 - 555 3.8e-11 42.9 57.3 8 9 0.00045 0.54 10.4 4.2 6 34 500 535 499 537 0.82 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF211-202 - 555 3.8e-11 42.9 57.3 9 9 0.022 27 5.0 0.7 6 15 528 537 527 546 0.90 Zinc ribbon domain zf_UBZ PF18439.1 32 ZNF211-202 - 555 1.7e-10 40.3 61.0 1 12 0.14 1.6e+02 2.0 0.2 8 21 131 145 129 149 0.90 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF211-202 - 555 1.7e-10 40.3 61.0 2 12 0.15 1.8e+02 1.8 1.9 3 11 248 256 246 267 0.84 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF211-202 - 555 1.7e-10 40.3 61.0 3 12 0.088 1.1e+02 2.6 0.3 3 12 276 285 274 286 0.87 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF211-202 - 555 1.7e-10 40.3 61.0 4 12 0.00024 0.29 10.8 0.1 3 20 304 322 302 323 0.88 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF211-202 - 555 1.7e-10 40.3 61.0 5 12 0.0027 3.2 7.4 0.1 3 20 332 350 330 351 0.85 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF211-202 - 555 1.7e-10 40.3 61.0 6 12 0.00093 1.1 8.9 0.1 3 15 360 372 358 379 0.81 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF211-202 - 555 1.7e-10 40.3 61.0 7 12 0.021 25 4.6 0.5 4 16 389 401 387 406 0.79 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF211-202 - 555 1.7e-10 40.3 61.0 8 12 0.00033 0.39 10.3 0.2 3 20 416 434 414 435 0.90 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF211-202 - 555 1.7e-10 40.3 61.0 9 12 0.00068 0.81 9.3 0.1 3 20 444 462 442 463 0.82 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF211-202 - 555 1.7e-10 40.3 61.0 10 12 0.044 52 3.5 0.8 4 14 473 483 471 491 0.82 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF211-202 - 555 1.7e-10 40.3 61.0 11 12 0.00025 0.3 10.7 0.2 3 20 500 518 498 519 0.86 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF211-202 - 555 1.7e-10 40.3 61.0 12 12 0.0066 7.9 6.2 0.6 3 12 528 537 526 546 0.90 Ubiquitin-Binding Zinc Finger zf-C2H2_jaz PF12171.8 27 ZNF211-202 - 555 1.1e-07 32.0 48.0 1 11 0.26 3.1e+02 1.8 0.6 6 22 130 146 129 149 0.89 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF211-202 - 555 1.1e-07 32.0 48.0 2 11 0.73 8.7e+02 0.4 0.4 2 11 276 285 275 286 0.89 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF211-202 - 555 1.1e-07 32.0 48.0 3 11 0.0065 7.7 6.9 0.1 2 22 304 324 303 324 0.90 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF211-202 - 555 1.1e-07 32.0 48.0 4 11 0.0054 6.5 7.2 0.0 2 21 332 351 331 352 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF211-202 - 555 1.1e-07 32.0 48.0 5 11 0.059 70 3.9 0.3 2 14 360 372 359 380 0.76 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF211-202 - 555 1.1e-07 32.0 48.0 6 11 0.008 9.6 6.6 0.1 2 20 388 406 387 408 0.86 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF211-202 - 555 1.1e-07 32.0 48.0 7 11 0.03 36 4.8 0.4 2 22 416 436 415 436 0.91 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF211-202 - 555 1.1e-07 32.0 48.0 8 11 0.0001 0.12 12.7 0.1 2 22 444 464 443 464 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF211-202 - 555 1.1e-07 32.0 48.0 9 11 0.019 23 5.4 0.6 3 22 473 492 471 492 0.90 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF211-202 - 555 1.1e-07 32.0 48.0 10 11 0.0011 1.3 9.4 0.0 2 21 500 519 499 520 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF211-202 - 555 1.1e-07 32.0 48.0 11 11 0.54 6.5e+02 0.8 0.4 4 21 530 547 527 548 0.85 Zinc-finger double-stranded RNA-binding # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF211-202.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF211-202.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF211-202.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF211-202.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF211-202.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:01:27 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZNF211-203 - 629 3.3e-90 292.8 93.9 1 17 0.85 1.2e+03 0.2 0.6 5 17 189 205 188 207 0.84 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF211-203 - 629 3.3e-90 292.8 93.9 2 17 0.094 1.3e+02 3.3 0.1 1 15 214 228 214 231 0.90 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF211-203 - 629 3.3e-90 292.8 93.9 3 17 0.045 62 4.3 0.1 7 18 242 253 236 259 0.84 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF211-203 - 629 3.3e-90 292.8 93.9 4 17 1.6 2.2e+03 -0.7 0.0 8 24 271 287 266 289 0.76 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF211-203 - 629 3.3e-90 292.8 93.9 5 17 1.2 1.6e+03 -0.2 0.1 19 26 298 305 296 305 0.90 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF211-203 - 629 3.3e-90 292.8 93.9 6 17 0.0032 4.4 7.9 0.3 12 25 319 332 315 333 0.83 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF211-203 - 629 3.3e-90 292.8 93.9 7 17 6.7e-09 9.2e-06 25.9 0.7 1 25 336 360 336 361 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF211-203 - 629 3.3e-90 292.8 93.9 8 17 6e-11 8.3e-08 32.3 0.3 5 25 368 388 365 389 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF211-203 - 629 3.3e-90 292.8 93.9 9 17 2.3e-11 3.2e-08 33.6 0.3 1 25 392 416 392 417 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF211-203 - 629 3.3e-90 292.8 93.9 10 17 7.4e-13 1e-09 38.4 0.3 1 25 420 444 420 445 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF211-203 - 629 3.3e-90 292.8 93.9 11 17 2e-11 2.7e-08 33.8 0.7 2 25 449 472 448 473 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF211-203 - 629 3.3e-90 292.8 93.9 12 17 3.7e-11 5.1e-08 33.0 1.8 3 26 478 501 476 501 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF211-203 - 629 3.3e-90 292.8 93.9 13 17 8.2e-10 1.1e-06 28.7 1.6 2 26 505 529 504 529 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF211-203 - 629 3.3e-90 292.8 93.9 14 17 1.9e-11 2.6e-08 33.9 1.3 1 25 532 556 532 557 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF211-203 - 629 3.3e-90 292.8 93.9 15 17 8.8e-13 1.2e-09 38.1 0.2 1 25 560 584 560 585 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF211-203 - 629 3.3e-90 292.8 93.9 16 17 4.3e-11 5.9e-08 32.8 1.0 2 25 589 612 588 613 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF211-203 - 629 3.3e-90 292.8 93.9 17 17 0.017 23 5.6 0.1 3 14 618 629 617 629 0.89 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZNF211-203 - 629 2.7e-64 210.2 102.3 1 13 0.00016 0.22 12.0 1.1 4 23 203 222 197 222 0.89 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF211-203 - 629 2.7e-64 210.2 102.3 2 13 0.38 5.3e+02 1.4 0.0 5 17 298 310 295 311 0.85 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF211-203 - 629 2.7e-64 210.2 102.3 3 13 3.5e-06 0.0049 17.3 4.5 1 23 322 344 322 344 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF211-203 - 629 2.7e-64 210.2 102.3 4 13 1.9e-07 0.00027 21.2 1.1 1 23 350 372 350 372 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF211-203 - 629 2.7e-64 210.2 102.3 5 13 1.8e-08 2.5e-05 24.5 0.4 1 23 378 400 378 400 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF211-203 - 629 2.7e-64 210.2 102.3 6 13 3.8e-10 5.2e-07 29.8 0.7 1 23 406 428 406 428 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF211-203 - 629 2.7e-64 210.2 102.3 7 13 1.6e-08 2.2e-05 24.7 0.8 1 23 434 456 434 456 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF211-203 - 629 2.7e-64 210.2 102.3 8 13 1.4e-08 1.9e-05 24.8 4.3 1 23 462 484 462 484 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF211-203 - 629 2.7e-64 210.2 102.3 9 13 5.3e-08 7.4e-05 23.0 2.9 1 23 490 512 490 512 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF211-203 - 629 2.7e-64 210.2 102.3 10 13 1.4e-10 1.9e-07 31.1 1.7 1 23 518 540 518 540 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF211-203 - 629 2.7e-64 210.2 102.3 11 13 1.2e-06 0.0016 18.7 2.4 2 23 547 568 546 568 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF211-203 - 629 2.7e-64 210.2 102.3 12 13 1.8e-09 2.5e-06 27.6 0.7 1 23 574 596 574 596 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF211-203 - 629 2.7e-64 210.2 102.3 13 13 2e-05 0.028 14.9 1.7 1 23 602 624 602 624 0.99 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZNF211-203 - 629 5e-35 117.1 106.6 1 13 0.47 6.5e+02 1.7 0.3 3 19 177 193 176 196 0.85 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF211-203 - 629 5e-35 117.1 106.6 2 13 0.048 66 4.7 0.5 6 23 205 222 197 223 0.82 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF211-203 - 629 5e-35 117.1 106.6 3 13 0.0014 1.9 9.5 4.5 1 23 322 344 322 345 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF211-203 - 629 5e-35 117.1 106.6 4 13 0.00052 0.72 10.9 0.9 1 23 350 372 350 373 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF211-203 - 629 5e-35 117.1 106.6 5 13 5.5e-07 0.00076 20.1 0.5 1 23 378 400 378 401 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF211-203 - 629 5e-35 117.1 106.6 6 13 4.3e-06 0.0059 17.3 0.6 1 23 406 428 406 429 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF211-203 - 629 5e-35 117.1 106.6 7 13 9.3e-06 0.013 16.3 0.9 1 23 434 456 434 457 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF211-203 - 629 5e-35 117.1 106.6 8 13 1.2e-05 0.016 16.0 3.4 1 23 462 484 462 485 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF211-203 - 629 5e-35 117.1 106.6 9 13 1.1e-05 0.016 16.0 2.9 1 23 490 512 490 513 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF211-203 - 629 5e-35 117.1 106.6 10 13 1.3e-05 0.017 15.9 1.5 1 23 518 540 518 541 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF211-203 - 629 5e-35 117.1 106.6 11 13 1.9e-06 0.0027 18.4 2.7 2 23 547 568 546 569 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF211-203 - 629 5e-35 117.1 106.6 12 13 1.2e-06 0.0016 19.1 0.8 1 23 574 596 574 597 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF211-203 - 629 5e-35 117.1 106.6 13 13 4.5e-06 0.0062 17.3 1.5 1 23 602 624 602 625 0.93 C2H2-type zinc finger KRAB PF01352.27 42 ZNF211-203 - 629 5.3e-22 77.2 1.4 1 1 7.9e-25 1.1e-21 76.2 1.4 1 42 45 86 45 86 0.99 KRAB box zf-C2H2_6 PF13912.6 27 ZNF211-203 - 629 2.3e-20 72.1 102.7 1 13 0.85 1.2e+03 -0.3 0.5 6 22 204 220 203 222 0.62 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF211-203 - 629 2.3e-20 72.1 102.7 2 13 2.6 3.5e+03 -1.9 0.0 7 13 299 305 298 309 0.79 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF211-203 - 629 2.3e-20 72.1 102.7 3 13 0.18 2.5e+02 1.8 2.8 2 9 322 329 321 346 0.86 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF211-203 - 629 2.3e-20 72.1 102.7 4 13 0.00068 0.94 9.6 1.6 2 16 350 364 350 373 0.83 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF211-203 - 629 2.3e-20 72.1 102.7 5 13 1.1e-08 1.5e-05 24.9 0.5 2 24 378 400 378 403 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF211-203 - 629 2.3e-20 72.1 102.7 6 13 2.3e-05 0.032 14.2 0.9 2 24 406 428 406 431 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF211-203 - 629 2.3e-20 72.1 102.7 7 13 7.2e-05 0.1 12.7 1.0 2 12 434 444 434 456 0.85 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF211-203 - 629 2.3e-20 72.1 102.7 8 13 2.9e-06 0.004 17.1 3.1 2 24 462 484 462 487 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF211-203 - 629 2.3e-20 72.1 102.7 9 13 0.0013 1.8 8.7 2.6 2 12 490 500 490 513 0.83 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF211-203 - 629 2.3e-20 72.1 102.7 10 13 0.0069 9.5 6.4 1.4 2 12 518 528 518 541 0.79 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF211-203 - 629 2.3e-20 72.1 102.7 11 13 0.0001 0.14 12.2 3.0 3 24 547 568 547 571 0.92 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF211-203 - 629 2.3e-20 72.1 102.7 12 13 1.9e-06 0.0027 17.7 1.6 2 24 574 596 574 599 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF211-203 - 629 2.3e-20 72.1 102.7 13 13 0.0013 1.8 8.6 2.0 2 12 602 612 602 624 0.83 C2H2-type zinc finger Zn-ribbon_8 PF09723.10 40 ZNF211-203 - 629 2.6e-11 43.4 55.0 1 9 5.2 7.2e+03 -2.8 0.0 10 16 204 210 203 220 0.76 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF211-203 - 629 2.6e-11 43.4 55.0 2 9 0.1 1.4e+02 2.7 0.8 6 38 322 333 298 347 0.75 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF211-203 - 629 2.6e-11 43.4 55.0 3 9 6.8e-07 0.00094 19.3 1.6 6 36 350 387 349 391 0.88 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF211-203 - 629 2.6e-11 43.4 55.0 4 9 0.0029 4 7.6 0.2 6 19 406 419 405 429 0.82 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF211-203 - 629 2.6e-11 43.4 55.0 5 9 1.8e-05 0.025 14.7 2.4 6 38 434 473 433 475 0.88 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF211-203 - 629 2.6e-11 43.4 55.0 6 9 0.0013 1.7 8.8 0.3 6 22 490 506 489 512 0.83 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF211-203 - 629 2.6e-11 43.4 55.0 7 9 0.00037 0.5 10.5 1.9 6 34 518 553 517 556 0.87 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF211-203 - 629 2.6e-11 43.4 55.0 8 9 0.0005 0.69 10.1 4.4 6 34 574 609 573 612 0.82 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF211-203 - 629 2.6e-11 43.4 55.0 9 9 0.024 33 4.7 0.8 6 15 602 611 601 620 0.90 Zinc ribbon domain zf_UBZ PF18439.1 32 ZNF211-203 - 629 9.3e-10 37.9 61.0 1 12 0.14 1.9e+02 1.8 0.2 8 21 205 219 203 223 0.90 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF211-203 - 629 9.3e-10 37.9 61.0 2 12 0.15 2.1e+02 1.6 1.9 3 11 322 330 320 341 0.84 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF211-203 - 629 9.3e-10 37.9 61.0 3 12 0.088 1.2e+02 2.4 0.3 3 12 350 359 348 360 0.87 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF211-203 - 629 9.3e-10 37.9 61.0 4 12 0.00024 0.34 10.6 0.1 3 20 378 396 376 397 0.88 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF211-203 - 629 9.3e-10 37.9 61.0 5 12 0.0027 3.7 7.2 0.1 3 20 406 424 404 425 0.85 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF211-203 - 629 9.3e-10 37.9 61.0 6 12 0.00093 1.3 8.7 0.1 3 15 434 446 432 453 0.81 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF211-203 - 629 9.3e-10 37.9 61.0 7 12 0.021 29 4.4 0.5 4 16 463 475 461 480 0.79 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF211-203 - 629 9.3e-10 37.9 61.0 8 12 0.00033 0.45 10.1 0.2 3 20 490 508 488 509 0.90 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF211-203 - 629 9.3e-10 37.9 61.0 9 12 0.00068 0.94 9.1 0.1 3 20 518 536 516 537 0.82 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF211-203 - 629 9.3e-10 37.9 61.0 10 12 0.044 60 3.4 0.8 4 14 547 557 545 565 0.82 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF211-203 - 629 9.3e-10 37.9 61.0 11 12 0.00025 0.35 10.5 0.2 3 20 574 592 572 593 0.86 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF211-203 - 629 9.3e-10 37.9 61.0 12 12 0.0066 9 6.0 0.6 3 12 602 611 600 620 0.90 Ubiquitin-Binding Zinc Finger zf-C2H2_jaz PF12171.8 27 ZNF211-203 - 629 5e-07 29.8 48.0 1 11 0.26 3.5e+02 1.6 0.6 6 22 204 220 203 223 0.89 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF211-203 - 629 5e-07 29.8 48.0 2 11 0.72 1e+03 0.2 0.4 2 11 350 359 349 360 0.89 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF211-203 - 629 5e-07 29.8 48.0 3 11 0.0065 8.9 6.7 0.1 2 22 378 398 377 398 0.90 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF211-203 - 629 5e-07 29.8 48.0 4 11 0.0054 7.5 7.0 0.0 2 21 406 425 405 426 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF211-203 - 629 5e-07 29.8 48.0 5 11 0.059 81 3.7 0.3 2 14 434 446 433 454 0.76 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF211-203 - 629 5e-07 29.8 48.0 6 11 0.008 11 6.4 0.1 2 20 462 480 461 482 0.86 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF211-203 - 629 5e-07 29.8 48.0 7 11 0.03 41 4.6 0.4 2 22 490 510 489 510 0.91 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF211-203 - 629 5e-07 29.8 48.0 8 11 0.0001 0.14 12.5 0.1 2 22 518 538 517 538 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF211-203 - 629 5e-07 29.8 48.0 9 11 0.019 27 5.2 0.6 3 22 547 566 545 566 0.90 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF211-203 - 629 5e-07 29.8 48.0 10 11 0.0011 1.5 9.2 0.0 2 21 574 593 573 594 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF211-203 - 629 5e-07 29.8 48.0 11 11 0.54 7.5e+02 0.6 0.4 4 21 604 621 601 622 0.85 Zinc-finger double-stranded RNA-binding # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF211-203.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF211-203.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF211-203.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF211-203.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF211-203.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:01:28 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZNF211-204 - 564 4.4e-91 295.6 93.9 1 17 0.86 1e+03 0.4 0.6 5 17 124 140 123 142 0.84 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF211-204 - 564 4.4e-91 295.6 93.9 2 17 0.096 1.1e+02 3.4 0.1 1 15 149 163 149 166 0.90 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF211-204 - 564 4.4e-91 295.6 93.9 3 17 0.046 55 4.4 0.1 7 18 177 188 171 194 0.84 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF211-204 - 564 4.4e-91 295.6 93.9 4 17 1.7 2e+03 -0.5 0.0 8 24 206 222 201 224 0.76 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF211-204 - 564 4.4e-91 295.6 93.9 5 17 1.2 1.4e+03 -0.0 0.1 19 26 233 240 231 240 0.90 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF211-204 - 564 4.4e-91 295.6 93.9 6 17 0.0033 3.9 8.1 0.3 12 25 254 267 250 268 0.83 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF211-204 - 564 4.4e-91 295.6 93.9 7 17 6.8e-09 8.1e-06 26.0 0.7 1 25 271 295 271 296 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF211-204 - 564 4.4e-91 295.6 93.9 8 17 6.1e-11 7.3e-08 32.5 0.3 5 25 303 323 300 324 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF211-204 - 564 4.4e-91 295.6 93.9 9 17 2.3e-11 2.8e-08 33.8 0.3 1 25 327 351 327 352 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF211-204 - 564 4.4e-91 295.6 93.9 10 17 7.5e-13 9e-10 38.5 0.3 1 25 355 379 355 380 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF211-204 - 564 4.4e-91 295.6 93.9 11 17 2e-11 2.4e-08 34.0 0.7 2 25 384 407 383 408 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF211-204 - 564 4.4e-91 295.6 93.9 12 17 3.7e-11 4.4e-08 33.2 1.8 3 26 413 436 411 436 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF211-204 - 564 4.4e-91 295.6 93.9 13 17 8.3e-10 9.9e-07 28.9 1.6 2 26 440 464 439 464 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF211-204 - 564 4.4e-91 295.6 93.9 14 17 1.9e-11 2.3e-08 34.1 1.3 1 25 467 491 467 492 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF211-204 - 564 4.4e-91 295.6 93.9 15 17 8.9e-13 1.1e-09 38.3 0.2 1 25 495 519 495 520 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF211-204 - 564 4.4e-91 295.6 93.9 16 17 4.4e-11 5.2e-08 33.0 1.0 2 25 524 547 523 548 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF211-204 - 564 4.4e-91 295.6 93.9 17 17 0.017 20 5.8 0.1 3 14 553 564 552 564 0.89 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZNF211-204 - 564 7.8e-63 205.6 109.2 1 13 0.00016 0.2 12.2 1.1 4 23 138 157 132 157 0.89 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF211-204 - 564 7.8e-63 205.6 109.2 2 13 0.39 4.7e+02 1.6 0.0 5 17 233 245 230 246 0.85 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF211-204 - 564 7.8e-63 205.6 109.2 3 13 3.6e-06 0.0043 17.4 4.5 1 23 257 279 257 279 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF211-204 - 564 7.8e-63 205.6 109.2 4 13 2e-07 0.00023 21.4 1.1 1 23 285 307 285 307 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF211-204 - 564 7.8e-63 205.6 109.2 5 13 1.9e-08 2.2e-05 24.6 0.4 1 23 313 335 313 335 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF211-204 - 564 7.8e-63 205.6 109.2 6 13 3.8e-10 4.6e-07 29.9 0.7 1 23 341 363 341 363 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF211-204 - 564 7.8e-63 205.6 109.2 7 13 1.6e-08 1.9e-05 24.8 0.8 1 23 369 391 369 391 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF211-204 - 564 7.8e-63 205.6 109.2 8 13 1.4e-08 1.7e-05 25.0 4.3 1 23 397 419 397 419 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF211-204 - 564 7.8e-63 205.6 109.2 9 13 5.4e-08 6.5e-05 23.2 2.9 1 23 425 447 425 447 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF211-204 - 564 7.8e-63 205.6 109.2 10 13 1.4e-10 1.7e-07 31.3 1.7 1 23 453 475 453 475 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF211-204 - 564 7.8e-63 205.6 109.2 11 13 1.2e-06 0.0014 18.9 2.4 2 23 482 503 481 503 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF211-204 - 564 7.8e-63 205.6 109.2 12 13 1.8e-09 2.2e-06 27.8 0.7 1 23 509 531 509 531 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF211-204 - 564 7.8e-63 205.6 109.2 13 13 2.1e-05 0.025 15.0 1.7 1 23 537 559 537 559 0.99 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZNF211-204 - 564 9.2e-36 119.4 106.6 1 13 0.48 5.7e+02 1.8 0.3 3 19 112 128 111 131 0.85 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF211-204 - 564 9.2e-36 119.4 106.6 2 13 0.049 58 4.9 0.5 6 23 140 157 132 158 0.82 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF211-204 - 564 9.2e-36 119.4 106.6 3 13 0.0014 1.7 9.7 4.5 1 23 257 279 257 280 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF211-204 - 564 9.2e-36 119.4 106.6 4 13 0.00053 0.63 11.0 0.9 1 23 285 307 285 308 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF211-204 - 564 9.2e-36 119.4 106.6 5 13 5.6e-07 0.00066 20.3 0.5 1 23 313 335 313 336 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF211-204 - 564 9.2e-36 119.4 106.6 6 13 4.4e-06 0.0052 17.5 0.6 1 23 341 363 341 364 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF211-204 - 564 9.2e-36 119.4 106.6 7 13 9.4e-06 0.011 16.5 0.9 1 23 369 391 369 392 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF211-204 - 564 9.2e-36 119.4 106.6 8 13 1.2e-05 0.014 16.2 3.4 1 23 397 419 397 420 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF211-204 - 564 9.2e-36 119.4 106.6 9 13 1.1e-05 0.014 16.2 2.9 1 23 425 447 425 448 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF211-204 - 564 9.2e-36 119.4 106.6 10 13 1.3e-05 0.015 16.1 1.5 1 23 453 475 453 476 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF211-204 - 564 9.2e-36 119.4 106.6 11 13 2e-06 0.0024 18.6 2.7 2 23 482 503 481 504 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF211-204 - 564 9.2e-36 119.4 106.6 12 13 1.2e-06 0.0014 19.3 0.8 1 23 509 531 509 532 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF211-204 - 564 9.2e-36 119.4 106.6 13 13 4.6e-06 0.0055 17.4 1.5 1 23 537 559 537 560 0.93 C2H2-type zinc finger KRAB PF01352.27 42 ZNF211-204 - 564 4.6e-22 77.4 1.4 1 1 7.9e-25 9.5e-22 76.4 1.4 1 42 32 73 32 73 0.99 KRAB box zf-C2H2_6 PF13912.6 27 ZNF211-204 - 564 4.4e-21 74.4 102.6 1 13 0.86 1e+03 -0.1 0.5 6 22 139 155 138 157 0.62 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF211-204 - 564 4.4e-21 74.4 102.6 2 13 2.6 3.1e+03 -1.7 0.0 7 13 234 240 233 244 0.79 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF211-204 - 564 4.4e-21 74.4 102.6 3 13 0.18 2.2e+02 2.0 2.8 2 9 257 264 256 281 0.86 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF211-204 - 564 4.4e-21 74.4 102.6 4 13 0.00069 0.83 9.7 1.6 2 16 285 299 285 308 0.83 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF211-204 - 564 4.4e-21 74.4 102.6 5 13 1.1e-08 1.3e-05 25.0 0.5 2 24 313 335 313 338 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF211-204 - 564 4.4e-21 74.4 102.6 6 13 2.3e-05 0.028 14.4 0.9 2 24 341 363 341 366 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF211-204 - 564 4.4e-21 74.4 102.6 7 13 6.8e-05 0.081 13.0 1.0 2 12 369 379 369 392 0.85 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF211-204 - 564 4.4e-21 74.4 102.6 8 13 2.9e-06 0.0035 17.3 3.1 2 24 397 419 397 422 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF211-204 - 564 4.4e-21 74.4 102.6 9 13 0.0013 1.6 8.8 2.7 2 12 425 435 425 448 0.83 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF211-204 - 564 4.4e-21 74.4 102.6 10 13 0.007 8.4 6.5 1.4 2 12 453 463 453 476 0.79 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF211-204 - 564 4.4e-21 74.4 102.6 11 13 0.0001 0.12 12.4 3.0 3 24 482 503 482 506 0.92 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF211-204 - 564 4.4e-21 74.4 102.6 12 13 2e-06 0.0023 17.9 1.6 2 24 509 531 509 534 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF211-204 - 564 4.4e-21 74.4 102.6 13 13 0.0014 1.6 8.8 2.0 2 12 537 547 537 559 0.83 C2H2-type zinc finger Zn-ribbon_8 PF09723.10 40 ZNF211-204 - 564 4.4e-11 42.7 57.3 1 9 5.1 6.1e+03 -2.5 0.0 10 16 139 145 138 156 0.76 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF211-204 - 564 4.4e-11 42.7 57.3 2 9 0.1 1.2e+02 2.9 0.8 6 38 257 268 233 282 0.75 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF211-204 - 564 4.4e-11 42.7 57.3 3 9 6.8e-07 0.00082 19.4 1.6 6 36 285 322 284 326 0.88 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF211-204 - 564 4.4e-11 42.7 57.3 4 9 0.003 3.6 7.8 0.2 6 19 341 354 340 364 0.82 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF211-204 - 564 4.4e-11 42.7 57.3 5 9 1.8e-05 0.021 14.9 2.4 6 38 369 408 368 410 0.88 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF211-204 - 564 4.4e-11 42.7 57.3 6 9 0.0013 1.5 9.0 0.3 6 22 425 441 424 447 0.83 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF211-204 - 564 4.4e-11 42.7 57.3 7 9 0.0018 2.1 8.5 4.1 6 34 453 488 452 492 0.87 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF211-204 - 564 4.4e-11 42.7 57.3 8 9 0.00045 0.54 10.4 4.2 6 34 509 544 508 546 0.82 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF211-204 - 564 4.4e-11 42.7 57.3 9 9 0.022 27 5.0 0.7 6 15 537 546 536 555 0.90 Zinc ribbon domain zf_UBZ PF18439.1 32 ZNF211-204 - 564 2.2e-10 39.9 61.0 1 12 0.14 1.7e+02 1.9 0.2 8 21 140 154 138 158 0.90 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF211-204 - 564 2.2e-10 39.9 61.0 2 12 0.15 1.8e+02 1.8 1.9 3 11 257 265 255 276 0.84 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF211-204 - 564 2.2e-10 39.9 61.0 3 12 0.09 1.1e+02 2.5 0.3 3 12 285 294 283 295 0.87 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF211-204 - 564 2.2e-10 39.9 61.0 4 12 0.00025 0.3 10.7 0.1 3 20 313 331 311 332 0.88 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF211-204 - 564 2.2e-10 39.9 61.0 5 12 0.0027 3.3 7.4 0.1 3 20 341 359 339 360 0.85 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF211-204 - 564 2.2e-10 39.9 61.0 6 12 0.00095 1.1 8.9 0.1 3 15 369 381 367 388 0.81 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF211-204 - 564 2.2e-10 39.9 61.0 7 12 0.021 26 4.5 0.5 4 16 398 410 396 415 0.79 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF211-204 - 564 2.2e-10 39.9 61.0 8 12 0.00033 0.4 10.3 0.2 3 20 425 443 423 444 0.90 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF211-204 - 564 2.2e-10 39.9 61.0 9 12 0.00069 0.83 9.3 0.1 3 20 453 471 451 472 0.82 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF211-204 - 564 2.2e-10 39.9 61.0 10 12 0.045 53 3.5 0.8 4 14 482 492 480 500 0.82 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF211-204 - 564 2.2e-10 39.9 61.0 11 12 0.00026 0.31 10.7 0.2 3 20 509 527 507 528 0.86 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF211-204 - 564 2.2e-10 39.9 61.0 12 12 0.0067 8 6.2 0.6 3 12 537 546 535 555 0.90 Ubiquitin-Binding Zinc Finger zf-C2H2_jaz PF12171.8 27 ZNF211-204 - 564 1.3e-07 31.7 48.0 1 11 0.26 3.1e+02 1.8 0.6 6 22 139 155 138 158 0.89 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF211-204 - 564 1.3e-07 31.7 48.0 2 11 0.74 8.8e+02 0.4 0.4 2 11 285 294 284 295 0.89 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF211-204 - 564 1.3e-07 31.7 48.0 3 11 0.0066 7.9 6.9 0.1 2 22 313 333 312 333 0.90 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF211-204 - 564 1.3e-07 31.7 48.0 4 11 0.0055 6.6 7.2 0.0 2 21 341 360 340 361 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF211-204 - 564 1.3e-07 31.7 48.0 5 11 0.06 72 3.8 0.3 2 14 369 381 368 389 0.76 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF211-204 - 564 1.3e-07 31.7 48.0 6 11 0.0082 9.8 6.6 0.1 2 20 397 415 396 417 0.86 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF211-204 - 564 1.3e-07 31.7 48.0 7 11 0.031 36 4.8 0.4 2 22 425 445 424 445 0.91 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF211-204 - 564 1.3e-07 31.7 48.0 8 11 0.0001 0.12 12.6 0.1 2 22 453 473 452 473 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF211-204 - 564 1.3e-07 31.7 48.0 9 11 0.02 24 5.4 0.6 3 22 482 501 480 501 0.90 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF211-204 - 564 1.3e-07 31.7 48.0 10 11 0.0011 1.3 9.4 0.0 2 21 509 528 508 529 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF211-204 - 564 1.3e-07 31.7 48.0 11 11 0.55 6.6e+02 0.8 0.4 4 21 539 556 536 557 0.85 Zinc-finger double-stranded RNA-binding # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF211-204.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF211-204.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF211-204.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF211-204.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF211-204.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:01:28 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZNF211-205 - 503 5.1e-92 298.5 93.9 1 17 0.76 9e+02 0.6 0.6 5 17 63 79 62 81 0.84 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF211-205 - 503 5.1e-92 298.5 93.9 2 17 0.084 1e+02 3.6 0.1 1 15 88 102 88 105 0.90 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF211-205 - 503 5.1e-92 298.5 93.9 3 17 0.04 48 4.6 0.1 6 18 115 127 110 133 0.84 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF211-205 - 503 5.1e-92 298.5 93.9 4 17 1.4 1.7e+03 -0.3 0.0 8 24 145 161 140 163 0.76 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF211-205 - 503 5.1e-92 298.5 93.9 5 17 1 1.2e+03 0.2 0.1 19 26 172 179 170 179 0.90 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF211-205 - 503 5.1e-92 298.5 93.9 6 17 0.0029 3.4 8.2 0.3 12 25 193 206 189 207 0.83 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF211-205 - 503 5.1e-92 298.5 93.9 7 17 5.9e-09 7.1e-06 26.2 0.7 1 25 210 234 210 235 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF211-205 - 503 5.1e-92 298.5 93.9 8 17 5.3e-11 6.4e-08 32.7 0.3 5 25 242 262 239 263 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF211-205 - 503 5.1e-92 298.5 93.9 9 17 2e-11 2.4e-08 34.0 0.3 1 25 266 290 266 291 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF211-205 - 503 5.1e-92 298.5 93.9 10 17 6.6e-13 7.9e-10 38.7 0.3 1 25 294 318 294 319 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF211-205 - 503 5.1e-92 298.5 93.9 11 17 1.8e-11 2.1e-08 34.2 0.7 2 25 323 346 322 347 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF211-205 - 503 5.1e-92 298.5 93.9 12 17 3.2e-11 3.9e-08 33.4 1.8 3 26 352 375 350 375 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF211-205 - 503 5.1e-92 298.5 93.9 13 17 7.2e-10 8.6e-07 29.1 1.6 2 26 379 403 378 403 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF211-205 - 503 5.1e-92 298.5 93.9 14 17 1.7e-11 2e-08 34.3 1.3 1 25 406 430 406 431 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF211-205 - 503 5.1e-92 298.5 93.9 15 17 7.8e-13 9.3e-10 38.5 0.2 1 25 434 458 434 459 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF211-205 - 503 5.1e-92 298.5 93.9 16 17 3.8e-11 4.5e-08 33.2 1.0 2 25 463 486 462 487 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF211-205 - 503 5.1e-92 298.5 93.9 17 17 0.015 18 6.0 0.1 3 14 492 503 491 503 0.89 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZNF211-205 - 503 1.3e-63 208.0 109.2 1 13 0.00014 0.17 12.4 1.1 4 23 77 96 71 96 0.89 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF211-205 - 503 1.3e-63 208.0 109.2 2 13 0.34 4.1e+02 1.8 0.0 5 17 172 184 169 185 0.85 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF211-205 - 503 1.3e-63 208.0 109.2 3 13 3.1e-06 0.0037 17.6 4.5 1 23 196 218 196 218 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF211-205 - 503 1.3e-63 208.0 109.2 4 13 1.7e-07 0.00021 21.6 1.1 1 23 224 246 224 246 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF211-205 - 503 1.3e-63 208.0 109.2 5 13 1.6e-08 1.9e-05 24.8 0.4 1 23 252 274 252 274 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF211-205 - 503 1.3e-63 208.0 109.2 6 13 3.4e-10 4e-07 30.1 0.7 1 23 280 302 280 302 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF211-205 - 503 1.3e-63 208.0 109.2 7 13 1.4e-08 1.7e-05 25.0 0.8 1 23 308 330 308 330 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF211-205 - 503 1.3e-63 208.0 109.2 8 13 1.2e-08 1.5e-05 25.2 4.3 1 23 336 358 336 358 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF211-205 - 503 1.3e-63 208.0 109.2 9 13 4.7e-08 5.6e-05 23.4 2.9 1 23 364 386 364 386 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF211-205 - 503 1.3e-63 208.0 109.2 10 13 1.3e-10 1.5e-07 31.5 1.7 1 23 392 414 392 414 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF211-205 - 503 1.3e-63 208.0 109.2 11 13 1.1e-06 0.0013 19.1 2.4 2 23 421 442 420 442 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF211-205 - 503 1.3e-63 208.0 109.2 12 13 1.6e-09 1.9e-06 28.0 0.7 1 23 448 470 448 470 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF211-205 - 503 1.3e-63 208.0 109.2 13 13 1.8e-05 0.022 15.2 1.7 1 23 476 498 476 498 0.99 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZNF211-205 - 503 1.5e-36 121.9 106.6 1 13 0.42 5e+02 2.0 0.3 3 19 51 67 50 70 0.85 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF211-205 - 503 1.5e-36 121.9 106.6 2 13 0.042 51 5.1 0.5 6 23 79 96 71 97 0.82 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF211-205 - 503 1.5e-36 121.9 106.6 3 13 0.0012 1.5 9.9 4.5 1 23 196 218 196 219 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF211-205 - 503 1.5e-36 121.9 106.6 4 13 0.00046 0.55 11.2 0.9 1 23 224 246 224 247 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF211-205 - 503 1.5e-36 121.9 106.6 5 13 4.8e-07 0.00058 20.5 0.5 1 23 252 274 252 275 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF211-205 - 503 1.5e-36 121.9 106.6 6 13 3.8e-06 0.0045 17.7 0.6 1 23 280 302 280 303 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF211-205 - 503 1.5e-36 121.9 106.6 7 13 8.2e-06 0.0098 16.7 0.9 1 23 308 330 308 331 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF211-205 - 503 1.5e-36 121.9 106.6 8 13 1e-05 0.012 16.4 3.4 1 23 336 358 336 359 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF211-205 - 503 1.5e-36 121.9 106.6 9 13 1e-05 0.012 16.4 2.9 1 23 364 386 364 387 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF211-205 - 503 1.5e-36 121.9 106.6 10 13 1.1e-05 0.013 16.2 1.5 1 23 392 414 392 415 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF211-205 - 503 1.5e-36 121.9 106.6 11 13 1.7e-06 0.0021 18.8 2.7 2 23 421 442 420 443 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF211-205 - 503 1.5e-36 121.9 106.6 12 13 1e-06 0.0012 19.5 0.8 1 23 448 470 448 471 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF211-205 - 503 1.5e-36 121.9 106.6 13 13 4e-06 0.0048 17.6 1.5 1 23 476 498 476 499 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF211-205 - 503 8.5e-22 76.7 102.6 1 13 0.76 9.1e+02 0.0 0.5 6 23 78 95 77 96 0.63 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF211-205 - 503 8.5e-22 76.7 102.6 2 13 2.3 2.8e+03 -1.5 0.0 7 13 173 179 172 183 0.79 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF211-205 - 503 8.5e-22 76.7 102.6 3 13 0.16 1.9e+02 2.2 2.8 2 9 196 203 195 220 0.86 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF211-205 - 503 8.5e-22 76.7 102.6 4 13 0.00061 0.73 9.9 1.6 2 16 224 238 224 247 0.83 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF211-205 - 503 8.5e-22 76.7 102.6 5 13 9.6e-09 1.1e-05 25.2 0.5 2 24 252 274 252 277 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF211-205 - 503 8.5e-22 76.7 102.6 6 13 2e-05 0.024 14.6 0.9 2 24 280 302 280 305 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF211-205 - 503 8.5e-22 76.7 102.6 7 13 6e-05 0.071 13.1 1.0 2 12 308 318 308 331 0.85 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF211-205 - 503 8.5e-22 76.7 102.6 8 13 2.6e-06 0.0031 17.5 3.1 2 24 336 358 336 361 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF211-205 - 503 8.5e-22 76.7 102.6 9 13 0.0012 1.4 9.0 2.7 2 12 364 374 364 387 0.83 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF211-205 - 503 8.5e-22 76.7 102.6 10 13 0.0062 7.4 6.7 1.4 2 12 392 402 392 415 0.78 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF211-205 - 503 8.5e-22 76.7 102.6 11 13 8.9e-05 0.11 12.6 3.0 3 24 421 442 421 445 0.92 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF211-205 - 503 8.5e-22 76.7 102.6 12 13 1.7e-06 0.002 18.0 1.6 2 24 448 470 448 473 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF211-205 - 503 8.5e-22 76.7 102.6 13 13 0.0012 1.4 9.0 2.0 2 12 476 486 476 498 0.83 C2H2-type zinc finger Zn-ribbon_8 PF09723.10 40 ZNF211-205 - 503 2.9e-11 43.3 58.3 1 9 4.3 5.2e+03 -2.3 0.0 10 16 78 84 77 96 0.75 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF211-205 - 503 2.9e-11 43.3 58.3 2 9 0.089 1.1e+02 3.1 0.8 6 38 196 207 172 221 0.75 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF211-205 - 503 2.9e-11 43.3 58.3 3 9 5.9e-07 0.00071 19.6 1.6 6 36 224 261 223 265 0.88 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF211-205 - 503 2.9e-11 43.3 58.3 4 9 0.0026 3.1 8.0 0.2 6 19 280 293 279 303 0.82 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF211-205 - 503 2.9e-11 43.3 58.3 5 9 1.6e-05 0.019 15.1 2.4 6 38 308 347 307 349 0.88 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF211-205 - 503 2.9e-11 43.3 58.3 6 9 0.0011 1.4 9.1 0.3 6 22 364 380 363 386 0.83 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF211-205 - 503 2.9e-11 43.3 58.3 7 9 0.0015 1.8 8.7 4.1 6 34 392 427 391 431 0.87 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF211-205 - 503 2.9e-11 43.3 58.3 8 9 0.00055 0.66 10.1 4.7 6 34 448 483 447 485 0.82 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF211-205 - 503 2.9e-11 43.3 58.3 9 9 0.02 24 5.1 0.8 6 15 476 485 475 496 0.89 Zinc ribbon domain zf_UBZ PF18439.1 32 ZNF211-205 - 503 4.7e-11 42.1 61.0 1 12 0.12 1.5e+02 2.1 0.2 8 21 79 93 77 97 0.90 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF211-205 - 503 4.7e-11 42.1 61.0 2 12 0.14 1.6e+02 2.0 1.9 3 11 196 204 194 215 0.84 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF211-205 - 503 4.7e-11 42.1 61.0 3 12 0.079 95 2.7 0.3 3 12 224 233 222 234 0.87 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF211-205 - 503 4.7e-11 42.1 61.0 4 12 0.00022 0.26 10.9 0.1 3 20 252 270 250 271 0.88 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF211-205 - 503 4.7e-11 42.1 61.0 5 12 0.0024 2.9 7.6 0.1 3 20 280 298 278 299 0.85 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF211-205 - 503 4.7e-11 42.1 61.0 6 12 0.00083 0.99 9.1 0.1 3 15 308 320 306 327 0.81 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF211-205 - 503 4.7e-11 42.1 61.0 7 12 0.019 23 4.7 0.5 4 16 337 349 335 354 0.79 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF211-205 - 503 4.7e-11 42.1 61.0 8 12 0.00029 0.35 10.5 0.2 3 20 364 382 362 383 0.90 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF211-205 - 503 4.7e-11 42.1 61.0 9 12 0.00061 0.73 9.5 0.1 3 20 392 410 390 411 0.82 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF211-205 - 503 4.7e-11 42.1 61.0 10 12 0.039 47 3.7 0.8 4 14 421 431 419 439 0.82 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF211-205 - 503 4.7e-11 42.1 61.0 11 12 0.00023 0.27 10.9 0.2 3 20 448 466 446 467 0.86 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF211-205 - 503 4.7e-11 42.1 61.0 12 12 0.0059 7 6.3 0.6 3 12 476 485 474 494 0.90 Ubiquitin-Binding Zinc Finger zf-C2H2_jaz PF12171.8 27 ZNF211-205 - 503 3e-08 33.7 48.0 1 11 0.23 2.7e+02 2.0 0.6 6 22 78 94 77 97 0.89 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF211-205 - 503 3e-08 33.7 48.0 2 11 0.65 7.8e+02 0.5 0.4 2 11 224 233 223 234 0.89 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF211-205 - 503 3e-08 33.7 48.0 3 11 0.0058 6.9 7.1 0.1 2 22 252 272 251 272 0.90 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF211-205 - 503 3e-08 33.7 48.0 4 11 0.0048 5.8 7.3 0.0 2 21 280 299 279 300 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF211-205 - 503 3e-08 33.7 48.0 5 11 0.053 63 4.0 0.3 2 14 308 320 307 328 0.76 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF211-205 - 503 3e-08 33.7 48.0 6 11 0.0072 8.6 6.8 0.1 2 20 336 354 335 356 0.86 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF211-205 - 503 3e-08 33.7 48.0 7 11 0.027 32 5.0 0.4 2 22 364 384 363 384 0.91 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF211-205 - 503 3e-08 33.7 48.0 8 11 9.1e-05 0.11 12.8 0.1 2 22 392 412 391 412 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF211-205 - 503 3e-08 33.7 48.0 9 11 0.017 21 5.6 0.6 3 22 421 440 419 440 0.90 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF211-205 - 503 3e-08 33.7 48.0 10 11 0.00097 1.2 9.6 0.0 2 21 448 467 447 468 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF211-205 - 503 3e-08 33.7 48.0 11 11 0.48 5.8e+02 1.0 0.4 4 21 478 495 475 496 0.85 Zinc-finger double-stranded RNA-binding # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF211-205.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF211-205.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF211-205.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF211-205.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF211-205.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:01:29 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZNF211-206 - 540 1.8e-91 296.8 93.9 1 17 0.93 9.8e+02 0.5 0.6 5 17 100 116 99 118 0.84 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF211-206 - 540 1.8e-91 296.8 93.9 2 17 0.1 1.1e+02 3.5 0.1 1 15 125 139 125 142 0.90 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF211-206 - 540 1.8e-91 296.8 93.9 3 17 0.049 52 4.5 0.1 6 18 152 164 147 170 0.84 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF211-206 - 540 1.8e-91 296.8 93.9 4 17 1.8 1.9e+03 -0.4 0.0 8 24 182 198 177 200 0.76 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF211-206 - 540 1.8e-91 296.8 93.9 5 17 1.3 1.3e+03 0.1 0.1 19 26 209 216 207 216 0.90 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF211-206 - 540 1.8e-91 296.8 93.9 6 17 0.0035 3.7 8.1 0.3 12 25 230 243 226 244 0.83 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF211-206 - 540 1.8e-91 296.8 93.9 7 17 7.3e-09 7.7e-06 26.1 0.7 1 25 247 271 247 272 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF211-206 - 540 1.8e-91 296.8 93.9 8 17 6.6e-11 7e-08 32.6 0.3 5 25 279 299 276 300 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF211-206 - 540 1.8e-91 296.8 93.9 9 17 2.5e-11 2.7e-08 33.9 0.3 1 25 303 327 303 328 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF211-206 - 540 1.8e-91 296.8 93.9 10 17 8.1e-13 8.6e-10 38.6 0.3 1 25 331 355 331 356 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF211-206 - 540 1.8e-91 296.8 93.9 11 17 2.2e-11 2.3e-08 34.1 0.7 2 25 360 383 359 384 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF211-206 - 540 1.8e-91 296.8 93.9 12 17 4e-11 4.2e-08 33.3 1.8 3 26 389 412 387 412 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF211-206 - 540 1.8e-91 296.8 93.9 13 17 8.9e-10 9.4e-07 29.0 1.6 2 26 416 440 415 440 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF211-206 - 540 1.8e-91 296.8 93.9 14 17 2.1e-11 2.2e-08 34.2 1.3 1 25 443 467 443 468 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF211-206 - 540 1.8e-91 296.8 93.9 15 17 9.6e-13 1e-09 38.4 0.2 1 25 471 495 471 496 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF211-206 - 540 1.8e-91 296.8 93.9 16 17 4.7e-11 4.9e-08 33.0 1.0 2 25 500 523 499 524 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF211-206 - 540 1.8e-91 296.8 93.9 17 17 0.018 19 5.9 0.1 3 14 529 540 528 540 0.89 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZNF211-206 - 540 3.8e-63 206.6 109.2 1 13 0.00018 0.19 12.3 1.1 4 23 114 133 108 133 0.89 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF211-206 - 540 3.8e-63 206.6 109.2 2 13 0.42 4.4e+02 1.6 0.0 5 17 209 221 206 222 0.85 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF211-206 - 540 3.8e-63 206.6 109.2 3 13 3.9e-06 0.0041 17.5 4.5 1 23 233 255 233 255 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF211-206 - 540 3.8e-63 206.6 109.2 4 13 2.1e-07 0.00022 21.5 1.1 1 23 261 283 261 283 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF211-206 - 540 3.8e-63 206.6 109.2 5 13 2e-08 2.1e-05 24.7 0.4 1 23 289 311 289 311 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF211-206 - 540 3.8e-63 206.6 109.2 6 13 4.1e-10 4.4e-07 30.0 0.7 1 23 317 339 317 339 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF211-206 - 540 3.8e-63 206.6 109.2 7 13 1.7e-08 1.8e-05 24.9 0.8 1 23 345 367 345 367 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF211-206 - 540 3.8e-63 206.6 109.2 8 13 1.5e-08 1.6e-05 25.1 4.3 1 23 373 395 373 395 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF211-206 - 540 3.8e-63 206.6 109.2 9 13 5.8e-08 6.1e-05 23.2 2.9 1 23 401 423 401 423 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF211-206 - 540 3.8e-63 206.6 109.2 10 13 1.5e-10 1.6e-07 31.4 1.7 1 23 429 451 429 451 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF211-206 - 540 3.8e-63 206.6 109.2 11 13 1.3e-06 0.0014 19.0 2.4 2 23 458 479 457 479 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF211-206 - 540 3.8e-63 206.6 109.2 12 13 2e-09 2.1e-06 27.9 0.7 1 23 485 507 485 507 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF211-206 - 540 3.8e-63 206.6 109.2 13 13 2.2e-05 0.023 15.1 1.7 1 23 513 535 513 535 0.99 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZNF211-206 - 540 4.3e-36 120.5 106.6 1 13 0.51 5.4e+02 1.9 0.3 3 19 88 104 87 107 0.85 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF211-206 - 540 4.3e-36 120.5 106.6 2 13 0.052 55 5.0 0.5 6 23 116 133 108 134 0.82 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF211-206 - 540 4.3e-36 120.5 106.6 3 13 0.0015 1.6 9.8 4.5 1 23 233 255 233 256 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF211-206 - 540 4.3e-36 120.5 106.6 4 13 0.00057 0.6 11.1 0.9 1 23 261 283 261 284 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF211-206 - 540 4.3e-36 120.5 106.6 5 13 6e-07 0.00063 20.4 0.5 1 23 289 311 289 312 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF211-206 - 540 4.3e-36 120.5 106.6 6 13 4.7e-06 0.0049 17.6 0.6 1 23 317 339 317 340 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF211-206 - 540 4.3e-36 120.5 106.6 7 13 1e-05 0.011 16.5 0.9 1 23 345 367 345 368 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF211-206 - 540 4.3e-36 120.5 106.6 8 13 1.3e-05 0.013 16.2 3.4 1 23 373 395 373 396 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF211-206 - 540 4.3e-36 120.5 106.6 9 13 1.2e-05 0.013 16.3 2.9 1 23 401 423 401 424 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF211-206 - 540 4.3e-36 120.5 106.6 10 13 1.4e-05 0.014 16.1 1.5 1 23 429 451 429 452 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF211-206 - 540 4.3e-36 120.5 106.6 11 13 2.1e-06 0.0022 18.7 2.7 2 23 458 479 457 480 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF211-206 - 540 4.3e-36 120.5 106.6 12 13 1.3e-06 0.0014 19.3 0.8 1 23 485 507 485 508 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF211-206 - 540 4.3e-36 120.5 106.6 13 13 4.9e-06 0.0052 17.5 1.5 1 23 513 535 513 536 0.93 C2H2-type zinc finger KRAB PF01352.27 42 ZNF211-206 - 540 4.3e-22 77.5 1.4 1 1 8.5e-25 9e-22 76.5 1.4 1 42 8 49 8 49 0.99 KRAB box zf-C2H2_6 PF13912.6 27 ZNF211-206 - 540 2.2e-21 75.3 102.6 1 13 0.93 9.8e+02 -0.1 0.5 6 23 115 132 114 133 0.63 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF211-206 - 540 2.2e-21 75.3 102.6 2 13 2.8 3e+03 -1.6 0.0 7 13 210 216 209 220 0.79 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF211-206 - 540 2.2e-21 75.3 102.6 3 13 0.2 2.1e+02 2.1 2.8 2 9 233 240 232 257 0.86 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF211-206 - 540 2.2e-21 75.3 102.6 4 13 0.00075 0.79 9.8 1.6 2 16 261 275 261 284 0.83 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF211-206 - 540 2.2e-21 75.3 102.6 5 13 1.2e-08 1.2e-05 25.1 0.5 2 24 289 311 289 314 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF211-206 - 540 2.2e-21 75.3 102.6 6 13 2.5e-05 0.027 14.5 0.9 2 24 317 339 317 342 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF211-206 - 540 2.2e-21 75.3 102.6 7 13 7.3e-05 0.077 13.0 1.0 2 12 345 355 345 368 0.85 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF211-206 - 540 2.2e-21 75.3 102.6 8 13 3.1e-06 0.0033 17.4 3.1 2 24 373 395 373 398 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF211-206 - 540 2.2e-21 75.3 102.6 9 13 0.0014 1.5 8.9 2.7 2 12 401 411 401 424 0.83 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF211-206 - 540 2.2e-21 75.3 102.6 10 13 0.0076 8 6.6 1.4 2 12 429 439 429 452 0.79 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF211-206 - 540 2.2e-21 75.3 102.6 11 13 0.00011 0.12 12.5 3.0 3 24 458 479 458 482 0.92 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF211-206 - 540 2.2e-21 75.3 102.6 12 13 2.1e-06 0.0022 17.9 1.6 2 24 485 507 485 510 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF211-206 - 540 2.2e-21 75.3 102.6 13 13 0.0015 1.6 8.9 2.0 2 12 513 523 513 535 0.83 C2H2-type zinc finger Zn-ribbon_8 PF09723.10 40 ZNF211-206 - 540 2.9e-11 43.3 57.3 1 9 5.5 5.8e+03 -2.5 0.0 10 16 115 121 114 132 0.76 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF211-206 - 540 2.9e-11 43.3 57.3 2 9 0.11 1.2e+02 3.0 0.8 6 38 233 244 209 258 0.75 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF211-206 - 540 2.9e-11 43.3 57.3 3 9 7.3e-07 0.00077 19.5 1.6 6 36 261 298 260 302 0.88 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF211-206 - 540 2.9e-11 43.3 57.3 4 9 0.0032 3.4 7.9 0.2 6 19 317 330 316 340 0.82 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF211-206 - 540 2.9e-11 43.3 57.3 5 9 1.9e-05 0.02 15.0 2.4 6 38 345 384 344 386 0.88 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF211-206 - 540 2.9e-11 43.3 57.3 6 9 0.0014 1.5 9.0 0.3 6 22 401 417 400 423 0.83 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF211-206 - 540 2.9e-11 43.3 57.3 7 9 0.0019 2 8.6 4.1 6 34 429 464 428 468 0.87 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF211-206 - 540 2.9e-11 43.3 57.3 8 9 0.0005 0.52 10.5 4.2 6 34 485 520 484 522 0.82 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF211-206 - 540 2.9e-11 43.3 57.3 9 9 0.024 26 5.0 0.7 6 15 513 522 512 531 0.90 Zinc ribbon domain zf_UBZ PF18439.1 32 ZNF211-206 - 540 1.2e-10 40.8 61.0 1 12 0.15 1.6e+02 2.0 0.2 8 21 116 130 114 134 0.90 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF211-206 - 540 1.2e-10 40.8 61.0 2 12 0.17 1.8e+02 1.9 1.9 3 11 233 241 231 252 0.84 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF211-206 - 540 1.2e-10 40.8 61.0 3 12 0.097 1e+02 2.6 0.3 3 12 261 270 259 271 0.87 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF211-206 - 540 1.2e-10 40.8 61.0 4 12 0.00027 0.28 10.8 0.1 3 20 289 307 287 308 0.88 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF211-206 - 540 1.2e-10 40.8 61.0 5 12 0.0029 3.1 7.5 0.1 3 20 317 335 315 336 0.85 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF211-206 - 540 1.2e-10 40.8 61.0 6 12 0.001 1.1 8.9 0.1 3 15 345 357 343 364 0.81 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF211-206 - 540 1.2e-10 40.8 61.0 7 12 0.023 24 4.6 0.5 4 16 374 386 372 391 0.79 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF211-206 - 540 1.2e-10 40.8 61.0 8 12 0.00036 0.38 10.4 0.2 3 20 401 419 399 420 0.90 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF211-206 - 540 1.2e-10 40.8 61.0 9 12 0.00075 0.79 9.4 0.1 3 20 429 447 427 448 0.82 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF211-206 - 540 1.2e-10 40.8 61.0 10 12 0.048 51 3.6 0.8 4 14 458 468 456 476 0.82 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF211-206 - 540 1.2e-10 40.8 61.0 11 12 0.00028 0.29 10.7 0.2 3 20 485 503 483 504 0.86 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF211-206 - 540 1.2e-10 40.8 61.0 12 12 0.0072 7.6 6.2 0.6 3 12 513 522 511 531 0.90 Ubiquitin-Binding Zinc Finger zf-C2H2_jaz PF12171.8 27 ZNF211-206 - 540 7.2e-08 32.5 48.0 1 11 0.28 3e+02 1.9 0.6 6 22 115 131 114 134 0.89 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF211-206 - 540 7.2e-08 32.5 48.0 2 11 0.8 8.4e+02 0.4 0.4 2 11 261 270 260 271 0.89 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF211-206 - 540 7.2e-08 32.5 48.0 3 11 0.0071 7.5 7.0 0.1 2 22 289 309 288 309 0.90 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF211-206 - 540 7.2e-08 32.5 48.0 4 11 0.0059 6.3 7.2 0.0 2 21 317 336 316 337 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF211-206 - 540 7.2e-08 32.5 48.0 5 11 0.065 68 3.9 0.3 2 14 345 357 344 365 0.76 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF211-206 - 540 7.2e-08 32.5 48.0 6 11 0.0088 9.3 6.7 0.1 2 20 373 391 372 393 0.86 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF211-206 - 540 7.2e-08 32.5 48.0 7 11 0.033 35 4.9 0.4 2 22 401 421 400 421 0.91 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF211-206 - 540 7.2e-08 32.5 48.0 8 11 0.00011 0.12 12.7 0.1 2 22 429 449 428 449 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF211-206 - 540 7.2e-08 32.5 48.0 9 11 0.021 22 5.5 0.6 3 22 458 477 456 477 0.90 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF211-206 - 540 7.2e-08 32.5 48.0 10 11 0.0012 1.3 9.4 0.0 2 21 485 504 484 505 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF211-206 - 540 7.2e-08 32.5 48.0 11 11 0.6 6.3e+02 0.8 0.4 4 21 515 532 512 533 0.85 Zinc-finger double-stranded RNA-binding # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF211-206.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF211-206.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF211-206.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF211-206.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF211-206.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:01:29 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZNF211-207 - 576 6.5e-91 295.1 93.9 1 17 0.88 1.1e+03 0.4 0.6 5 17 136 152 135 154 0.84 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF211-207 - 576 6.5e-91 295.1 93.9 2 17 0.098 1.2e+02 3.4 0.1 1 15 161 175 161 178 0.90 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF211-207 - 576 6.5e-91 295.1 93.9 3 17 0.047 56 4.4 0.1 7 18 189 200 183 206 0.84 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF211-207 - 576 6.5e-91 295.1 93.9 4 17 1.7 2e+03 -0.5 0.0 8 24 218 234 213 236 0.76 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF211-207 - 576 6.5e-91 295.1 93.9 5 17 1.2 1.4e+03 -0.0 0.1 19 26 245 252 243 252 0.90 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF211-207 - 576 6.5e-91 295.1 93.9 6 17 0.0034 4 8.0 0.3 12 25 266 279 262 280 0.83 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF211-207 - 576 6.5e-91 295.1 93.9 7 17 7e-09 8.3e-06 26.0 0.7 1 25 283 307 283 308 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF211-207 - 576 6.5e-91 295.1 93.9 8 17 6.3e-11 7.5e-08 32.5 0.3 5 25 315 335 312 336 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF211-207 - 576 6.5e-91 295.1 93.9 9 17 2.4e-11 2.9e-08 33.8 0.3 1 25 339 363 339 364 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF211-207 - 576 6.5e-91 295.1 93.9 10 17 7.7e-13 9.2e-10 38.5 0.3 1 25 367 391 367 392 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF211-207 - 576 6.5e-91 295.1 93.9 11 17 2.1e-11 2.5e-08 34.0 0.7 2 25 396 419 395 420 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF211-207 - 576 6.5e-91 295.1 93.9 12 17 3.8e-11 4.6e-08 33.1 1.8 3 26 425 448 423 448 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF211-207 - 576 6.5e-91 295.1 93.9 13 17 8.5e-10 1e-06 28.9 1.6 2 26 452 476 451 476 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF211-207 - 576 6.5e-91 295.1 93.9 14 17 2e-11 2.4e-08 34.0 1.3 1 25 479 503 479 504 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF211-207 - 576 6.5e-91 295.1 93.9 15 17 9.1e-13 1.1e-09 38.3 0.2 1 25 507 531 507 532 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF211-207 - 576 6.5e-91 295.1 93.9 16 17 4.5e-11 5.3e-08 32.9 1.0 2 25 536 559 535 560 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF211-207 - 576 6.5e-91 295.1 93.9 17 17 0.017 21 5.8 0.1 3 14 565 576 564 576 0.89 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZNF211-207 - 576 1e-62 205.2 109.2 1 13 0.00017 0.2 12.2 1.1 4 23 150 169 144 169 0.89 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF211-207 - 576 1e-62 205.2 109.2 2 13 0.4 4.8e+02 1.5 0.0 5 17 245 257 242 258 0.85 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF211-207 - 576 1e-62 205.2 109.2 3 13 3.7e-06 0.0044 17.4 4.5 1 23 269 291 269 291 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF211-207 - 576 1e-62 205.2 109.2 4 13 2e-07 0.00024 21.4 1.1 1 23 297 319 297 319 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF211-207 - 576 1e-62 205.2 109.2 5 13 1.9e-08 2.3e-05 24.6 0.4 1 23 325 347 325 347 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF211-207 - 576 1e-62 205.2 109.2 6 13 3.9e-10 4.7e-07 29.9 0.7 1 23 353 375 353 375 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF211-207 - 576 1e-62 205.2 109.2 7 13 1.6e-08 2e-05 24.8 0.8 1 23 381 403 381 403 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF211-207 - 576 1e-62 205.2 109.2 8 13 1.4e-08 1.7e-05 25.0 4.3 1 23 409 431 409 431 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF211-207 - 576 1e-62 205.2 109.2 9 13 5.5e-08 6.6e-05 23.1 2.9 1 23 437 459 437 459 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF211-207 - 576 1e-62 205.2 109.2 10 13 1.5e-10 1.8e-07 31.3 1.7 1 23 465 487 465 487 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF211-207 - 576 1e-62 205.2 109.2 11 13 1.2e-06 0.0015 18.9 2.4 2 23 494 515 493 515 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF211-207 - 576 1e-62 205.2 109.2 12 13 1.9e-09 2.2e-06 27.8 0.7 1 23 521 543 521 543 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF211-207 - 576 1e-62 205.2 109.2 13 13 2.1e-05 0.025 15.0 1.7 1 23 549 571 549 571 0.99 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZNF211-207 - 576 1.3e-35 119.0 106.6 1 13 0.49 5.8e+02 1.8 0.3 3 19 124 140 123 143 0.85 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF211-207 - 576 1.3e-35 119.0 106.6 2 13 0.05 60 4.9 0.5 6 23 152 169 144 170 0.82 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF211-207 - 576 1.3e-35 119.0 106.6 3 13 0.0014 1.7 9.7 4.5 1 23 269 291 269 292 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF211-207 - 576 1.3e-35 119.0 106.6 4 13 0.00054 0.65 11.0 0.9 1 23 297 319 297 320 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF211-207 - 576 1.3e-35 119.0 106.6 5 13 5.7e-07 0.00068 20.3 0.5 1 23 325 347 325 348 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF211-207 - 576 1.3e-35 119.0 106.6 6 13 4.5e-06 0.0053 17.5 0.6 1 23 353 375 353 376 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF211-207 - 576 1.3e-35 119.0 106.6 7 13 9.6e-06 0.012 16.4 0.9 1 23 381 403 381 404 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF211-207 - 576 1.3e-35 119.0 106.6 8 13 1.2e-05 0.014 16.1 3.4 1 23 409 431 409 432 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF211-207 - 576 1.3e-35 119.0 106.6 9 13 1.2e-05 0.014 16.2 2.9 1 23 437 459 437 460 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF211-207 - 576 1.3e-35 119.0 106.6 10 13 1.3e-05 0.016 16.0 1.5 1 23 465 487 465 488 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF211-207 - 576 1.3e-35 119.0 106.6 11 13 2e-06 0.0024 18.6 2.7 2 23 494 515 493 516 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF211-207 - 576 1.3e-35 119.0 106.6 12 13 1.2e-06 0.0015 19.2 0.8 1 23 521 543 521 544 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF211-207 - 576 1.3e-35 119.0 106.6 13 13 4.7e-06 0.0056 17.4 1.5 1 23 549 571 549 572 0.93 C2H2-type zinc finger KRAB PF01352.27 42 ZNF211-207 - 576 4.7e-22 77.4 1.4 1 1 8.1e-25 9.7e-22 76.3 1.4 1 42 44 85 44 85 0.99 KRAB box zf-C2H2_6 PF13912.6 27 ZNF211-207 - 576 6e-21 74.0 102.6 1 13 0.89 1.1e+03 -0.2 0.5 6 22 151 167 150 169 0.62 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF211-207 - 576 6e-21 74.0 102.6 2 13 2.7 3.2e+03 -1.7 0.0 7 13 246 252 245 256 0.79 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF211-207 - 576 6e-21 74.0 102.6 3 13 0.19 2.2e+02 2.0 2.8 2 9 269 276 268 293 0.86 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF211-207 - 576 6e-21 74.0 102.6 4 13 0.00071 0.85 9.7 1.6 2 16 297 311 297 320 0.83 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF211-207 - 576 6e-21 74.0 102.6 5 13 1.1e-08 1.3e-05 25.0 0.5 2 24 325 347 325 350 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF211-207 - 576 6e-21 74.0 102.6 6 13 2.4e-05 0.029 14.4 0.9 2 24 353 375 353 378 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF211-207 - 576 6e-21 74.0 102.6 7 13 6.9e-05 0.083 12.9 1.0 2 12 381 391 381 404 0.85 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF211-207 - 576 6e-21 74.0 102.6 8 13 3e-06 0.0036 17.3 3.1 2 24 409 431 409 434 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF211-207 - 576 6e-21 74.0 102.6 9 13 0.0014 1.6 8.8 2.7 2 12 437 447 437 460 0.83 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF211-207 - 576 6e-21 74.0 102.6 10 13 0.0072 8.6 6.5 1.4 2 12 465 475 465 488 0.79 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF211-207 - 576 6e-21 74.0 102.6 11 13 0.0001 0.12 12.3 3.0 3 24 494 515 494 518 0.92 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF211-207 - 576 6e-21 74.0 102.6 12 13 2e-06 0.0024 17.8 1.6 2 24 521 543 521 546 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF211-207 - 576 6e-21 74.0 102.6 13 13 0.0014 1.7 8.8 2.0 2 12 549 559 549 571 0.83 C2H2-type zinc finger Zn-ribbon_8 PF09723.10 40 ZNF211-207 - 576 5.4e-11 42.4 57.3 1 9 5.2 6.2e+03 -2.6 0.0 10 16 151 157 150 168 0.76 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF211-207 - 576 5.4e-11 42.4 57.3 2 9 0.1 1.2e+02 2.9 0.8 6 38 269 280 245 294 0.75 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF211-207 - 576 5.4e-11 42.4 57.3 3 9 7e-07 0.00084 19.4 1.6 6 36 297 334 296 338 0.88 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF211-207 - 576 5.4e-11 42.4 57.3 4 9 0.0031 3.7 7.8 0.2 6 19 353 366 352 376 0.82 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF211-207 - 576 5.4e-11 42.4 57.3 5 9 1.8e-05 0.022 14.9 2.4 6 38 381 420 380 422 0.88 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF211-207 - 576 5.4e-11 42.4 57.3 6 9 0.0013 1.6 8.9 0.3 6 22 437 453 436 459 0.83 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF211-207 - 576 5.4e-11 42.4 57.3 7 9 0.0018 2.2 8.5 4.1 6 34 465 500 464 504 0.87 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF211-207 - 576 5.4e-11 42.4 57.3 8 9 0.00047 0.56 10.4 4.2 6 34 521 556 520 558 0.82 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF211-207 - 576 5.4e-11 42.4 57.3 9 9 0.023 28 5.0 0.7 6 15 549 558 548 567 0.90 Zinc ribbon domain zf_UBZ PF18439.1 32 ZNF211-207 - 576 2.9e-10 39.5 61.0 1 12 0.14 1.7e+02 1.9 0.2 8 21 152 166 150 170 0.90 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF211-207 - 576 2.9e-10 39.5 61.0 2 12 0.16 1.9e+02 1.8 1.9 3 11 269 277 267 288 0.84 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF211-207 - 576 2.9e-10 39.5 61.0 3 12 0.092 1.1e+02 2.5 0.3 3 12 297 306 295 307 0.87 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF211-207 - 576 2.9e-10 39.5 61.0 4 12 0.00026 0.31 10.7 0.1 3 20 325 343 323 344 0.88 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF211-207 - 576 2.9e-10 39.5 61.0 5 12 0.0028 3.3 7.4 0.1 3 20 353 371 351 372 0.85 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF211-207 - 576 2.9e-10 39.5 61.0 6 12 0.00097 1.2 8.8 0.1 3 15 381 393 379 400 0.81 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF211-207 - 576 2.9e-10 39.5 61.0 7 12 0.022 26 4.5 0.5 4 16 410 422 408 427 0.79 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF211-207 - 576 2.9e-10 39.5 61.0 8 12 0.00034 0.41 10.3 0.2 3 20 437 455 435 456 0.90 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF211-207 - 576 2.9e-10 39.5 61.0 9 12 0.00071 0.85 9.3 0.1 3 20 465 483 463 484 0.82 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF211-207 - 576 2.9e-10 39.5 61.0 10 12 0.046 54 3.5 0.8 4 14 494 504 492 512 0.82 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF211-207 - 576 2.9e-10 39.5 61.0 11 12 0.00026 0.32 10.6 0.2 3 20 521 539 519 540 0.86 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF211-207 - 576 2.9e-10 39.5 61.0 12 12 0.0069 8.2 6.1 0.6 3 12 549 558 547 567 0.90 Ubiquitin-Binding Zinc Finger zf-C2H2_jaz PF12171.8 27 ZNF211-207 - 576 1.5e-07 31.5 48.0 1 11 0.27 3.2e+02 1.8 0.6 6 22 151 167 150 170 0.89 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF211-207 - 576 1.5e-07 31.5 48.0 2 11 0.76 9.1e+02 0.3 0.4 2 11 297 306 296 307 0.89 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF211-207 - 576 1.5e-07 31.5 48.0 3 11 0.0068 8.1 6.9 0.1 2 22 325 345 324 345 0.90 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF211-207 - 576 1.5e-07 31.5 48.0 4 11 0.0056 6.7 7.1 0.0 2 21 353 372 352 373 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF211-207 - 576 1.5e-07 31.5 48.0 5 11 0.061 73 3.8 0.3 2 14 381 393 380 401 0.76 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF211-207 - 576 1.5e-07 31.5 48.0 6 11 0.0084 10 6.6 0.1 2 20 409 427 408 429 0.86 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF211-207 - 576 1.5e-07 31.5 48.0 7 11 0.031 37 4.7 0.4 2 22 437 457 436 457 0.91 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF211-207 - 576 1.5e-07 31.5 48.0 8 11 0.00011 0.13 12.6 0.1 2 22 465 485 464 485 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF211-207 - 576 1.5e-07 31.5 48.0 9 11 0.02 24 5.3 0.6 3 22 494 513 492 513 0.90 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF211-207 - 576 1.5e-07 31.5 48.0 10 11 0.0011 1.4 9.3 0.0 2 21 521 540 520 541 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF211-207 - 576 1.5e-07 31.5 48.0 11 11 0.57 6.8e+02 0.7 0.4 4 21 551 568 548 569 0.85 Zinc-finger double-stranded RNA-binding # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF211-207.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF211-207.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF211-207.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF211-207.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF211-207.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:01:30 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZNF211-208 - 628 3.2e-90 292.9 93.9 1 17 0.85 1.2e+03 0.2 0.6 5 17 188 204 187 206 0.84 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF211-208 - 628 3.2e-90 292.9 93.9 2 17 0.094 1.3e+02 3.3 0.1 1 15 213 227 213 230 0.90 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF211-208 - 628 3.2e-90 292.9 93.9 3 17 0.045 62 4.3 0.1 7 18 241 252 235 258 0.84 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF211-208 - 628 3.2e-90 292.9 93.9 4 17 1.6 2.2e+03 -0.6 0.0 8 24 270 286 265 288 0.76 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF211-208 - 628 3.2e-90 292.9 93.9 5 17 1.1 1.6e+03 -0.2 0.1 19 26 297 304 295 304 0.90 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF211-208 - 628 3.2e-90 292.9 93.9 6 17 0.0032 4.4 7.9 0.3 12 25 318 331 314 332 0.83 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF211-208 - 628 3.2e-90 292.9 93.9 7 17 6.7e-09 9.2e-06 25.9 0.7 1 25 335 359 335 360 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF211-208 - 628 3.2e-90 292.9 93.9 8 17 6e-11 8.3e-08 32.3 0.3 5 25 367 387 364 388 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF211-208 - 628 3.2e-90 292.9 93.9 9 17 2.3e-11 3.2e-08 33.6 0.3 1 25 391 415 391 416 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF211-208 - 628 3.2e-90 292.9 93.9 10 17 7.4e-13 1e-09 38.4 0.3 1 25 419 443 419 444 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF211-208 - 628 3.2e-90 292.9 93.9 11 17 2e-11 2.7e-08 33.9 0.7 2 25 448 471 447 472 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF211-208 - 628 3.2e-90 292.9 93.9 12 17 3.7e-11 5e-08 33.0 1.8 3 26 477 500 475 500 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF211-208 - 628 3.2e-90 292.9 93.9 13 17 8.1e-10 1.1e-06 28.8 1.6 2 26 504 528 503 528 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF211-208 - 628 3.2e-90 292.9 93.9 14 17 1.9e-11 2.6e-08 33.9 1.3 1 25 531 555 531 556 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF211-208 - 628 3.2e-90 292.9 93.9 15 17 8.8e-13 1.2e-09 38.1 0.2 1 25 559 583 559 584 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF211-208 - 628 3.2e-90 292.9 93.9 16 17 4.3e-11 5.9e-08 32.8 1.0 2 25 588 611 587 612 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF211-208 - 628 3.2e-90 292.9 93.9 17 17 0.017 23 5.6 0.1 3 14 617 628 616 628 0.89 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZNF211-208 - 628 2.5e-64 210.3 102.3 1 13 0.00016 0.22 12.0 1.1 4 23 202 221 196 221 0.89 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF211-208 - 628 2.5e-64 210.3 102.3 2 13 0.38 5.3e+02 1.4 0.0 5 17 297 309 294 310 0.85 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF211-208 - 628 2.5e-64 210.3 102.3 3 13 3.5e-06 0.0049 17.3 4.5 1 23 321 343 321 343 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF211-208 - 628 2.5e-64 210.3 102.3 4 13 1.9e-07 0.00027 21.2 1.1 1 23 349 371 349 371 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF211-208 - 628 2.5e-64 210.3 102.3 5 13 1.8e-08 2.5e-05 24.5 0.4 1 23 377 399 377 399 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF211-208 - 628 2.5e-64 210.3 102.3 6 13 3.8e-10 5.2e-07 29.8 0.7 1 23 405 427 405 427 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF211-208 - 628 2.5e-64 210.3 102.3 7 13 1.6e-08 2.2e-05 24.7 0.8 1 23 433 455 433 455 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF211-208 - 628 2.5e-64 210.3 102.3 8 13 1.4e-08 1.9e-05 24.8 4.3 1 23 461 483 461 483 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF211-208 - 628 2.5e-64 210.3 102.3 9 13 5.3e-08 7.3e-05 23.0 2.9 1 23 489 511 489 511 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF211-208 - 628 2.5e-64 210.3 102.3 10 13 1.4e-10 1.9e-07 31.1 1.7 1 23 517 539 517 539 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF211-208 - 628 2.5e-64 210.3 102.3 11 13 1.2e-06 0.0016 18.8 2.4 2 23 546 567 545 567 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF211-208 - 628 2.5e-64 210.3 102.3 12 13 1.8e-09 2.5e-06 27.6 0.7 1 23 573 595 573 595 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF211-208 - 628 2.5e-64 210.3 102.3 13 13 2e-05 0.028 14.9 1.7 1 23 601 623 601 623 0.99 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZNF211-208 - 628 4.7e-35 117.2 106.6 1 13 0.47 6.5e+02 1.7 0.3 3 19 176 192 175 195 0.85 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF211-208 - 628 4.7e-35 117.2 106.6 2 13 0.048 66 4.7 0.5 6 23 204 221 196 222 0.82 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF211-208 - 628 4.7e-35 117.2 106.6 3 13 0.0014 1.9 9.5 4.5 1 23 321 343 321 344 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF211-208 - 628 4.7e-35 117.2 106.6 4 13 0.00052 0.72 10.9 0.9 1 23 349 371 349 372 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF211-208 - 628 4.7e-35 117.2 106.6 5 13 5.5e-07 0.00075 20.1 0.5 1 23 377 399 377 400 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF211-208 - 628 4.7e-35 117.2 106.6 6 13 4.3e-06 0.0059 17.3 0.6 1 23 405 427 405 428 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF211-208 - 628 4.7e-35 117.2 106.6 7 13 9.3e-06 0.013 16.3 0.9 1 23 433 455 433 456 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF211-208 - 628 4.7e-35 117.2 106.6 8 13 1.2e-05 0.016 16.0 3.4 1 23 461 483 461 484 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF211-208 - 628 4.7e-35 117.2 106.6 9 13 1.1e-05 0.016 16.0 2.9 1 23 489 511 489 512 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF211-208 - 628 4.7e-35 117.2 106.6 10 13 1.3e-05 0.017 15.9 1.5 1 23 517 539 517 540 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF211-208 - 628 4.7e-35 117.2 106.6 11 13 1.9e-06 0.0027 18.4 2.7 2 23 546 567 545 568 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF211-208 - 628 4.7e-35 117.2 106.6 12 13 1.2e-06 0.0016 19.1 0.8 1 23 573 595 573 596 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF211-208 - 628 4.7e-35 117.2 106.6 13 13 4.5e-06 0.0062 17.3 1.5 1 23 601 623 601 624 0.93 C2H2-type zinc finger KRAB PF01352.27 42 ZNF211-208 - 628 5.2e-22 77.2 1.4 1 1 7.9e-25 1.1e-21 76.2 1.4 1 42 44 85 44 85 0.99 KRAB box zf-C2H2_6 PF13912.6 27 ZNF211-208 - 628 2.2e-20 72.1 102.7 1 13 0.84 1.2e+03 -0.3 0.5 6 22 203 219 202 221 0.62 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF211-208 - 628 2.2e-20 72.1 102.7 2 13 2.6 3.5e+03 -1.8 0.0 7 13 298 304 297 308 0.79 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF211-208 - 628 2.2e-20 72.1 102.7 3 13 0.18 2.4e+02 1.9 2.8 2 9 321 328 320 345 0.86 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF211-208 - 628 2.2e-20 72.1 102.7 4 13 0.00068 0.94 9.6 1.6 2 16 349 363 349 372 0.83 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF211-208 - 628 2.2e-20 72.1 102.7 5 13 1.1e-08 1.5e-05 24.9 0.5 2 24 377 399 377 402 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF211-208 - 628 2.2e-20 72.1 102.7 6 13 2.3e-05 0.032 14.2 0.9 2 24 405 427 405 430 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF211-208 - 628 2.2e-20 72.1 102.7 7 13 7.2e-05 0.099 12.7 1.0 2 12 433 443 433 455 0.85 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF211-208 - 628 2.2e-20 72.1 102.7 8 13 2.9e-06 0.004 17.1 3.1 2 24 461 483 461 486 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF211-208 - 628 2.2e-20 72.1 102.7 9 13 0.0013 1.8 8.7 2.6 2 12 489 499 489 512 0.83 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF211-208 - 628 2.2e-20 72.1 102.7 10 13 0.0069 9.5 6.4 1.4 2 12 517 527 517 540 0.79 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF211-208 - 628 2.2e-20 72.1 102.7 11 13 0.0001 0.14 12.2 3.0 3 24 546 567 546 570 0.92 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF211-208 - 628 2.2e-20 72.1 102.7 12 13 1.9e-06 0.0027 17.7 1.6 2 24 573 595 573 598 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF211-208 - 628 2.2e-20 72.1 102.7 13 13 0.0013 1.8 8.6 2.0 2 12 601 611 601 623 0.83 C2H2-type zinc finger Zn-ribbon_8 PF09723.10 40 ZNF211-208 - 628 2.8e-11 43.4 55.1 1 9 5.2 7.2e+03 -2.8 0.0 10 16 203 209 202 219 0.76 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF211-208 - 628 2.8e-11 43.4 55.1 2 9 0.1 1.4e+02 2.7 0.8 6 38 321 332 297 346 0.75 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF211-208 - 628 2.8e-11 43.4 55.1 3 9 6.8e-07 0.00093 19.3 1.6 6 36 349 386 348 390 0.88 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF211-208 - 628 2.8e-11 43.4 55.1 4 9 0.0029 4 7.6 0.2 6 19 405 418 404 428 0.82 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF211-208 - 628 2.8e-11 43.4 55.1 5 9 1.8e-05 0.025 14.7 2.4 6 38 433 472 432 474 0.88 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF211-208 - 628 2.8e-11 43.4 55.1 6 9 0.0013 1.7 8.8 0.3 6 22 489 505 488 511 0.83 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF211-208 - 628 2.8e-11 43.4 55.1 7 9 0.00037 0.5 10.5 1.9 6 34 517 552 516 555 0.87 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF211-208 - 628 2.8e-11 43.4 55.1 8 9 0.00055 0.76 10.0 4.5 6 34 573 608 572 611 0.82 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF211-208 - 628 2.8e-11 43.4 55.1 9 9 0.024 33 4.7 0.8 6 15 601 610 600 619 0.90 Zinc ribbon domain zf_UBZ PF18439.1 32 ZNF211-208 - 628 9.1e-10 38.0 61.0 1 12 0.14 1.9e+02 1.8 0.2 8 21 204 218 202 222 0.90 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF211-208 - 628 9.1e-10 38.0 61.0 2 12 0.15 2.1e+02 1.6 1.9 3 11 321 329 319 340 0.84 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF211-208 - 628 9.1e-10 38.0 61.0 3 12 0.088 1.2e+02 2.4 0.3 3 12 349 358 347 359 0.87 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF211-208 - 628 9.1e-10 38.0 61.0 4 12 0.00024 0.34 10.6 0.1 3 20 377 395 375 396 0.88 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF211-208 - 628 9.1e-10 38.0 61.0 5 12 0.0027 3.7 7.2 0.1 3 20 405 423 403 424 0.85 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF211-208 - 628 9.1e-10 38.0 61.0 6 12 0.00093 1.3 8.7 0.1 3 15 433 445 431 452 0.81 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF211-208 - 628 9.1e-10 38.0 61.0 7 12 0.021 29 4.4 0.5 4 16 462 474 460 479 0.79 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF211-208 - 628 9.1e-10 38.0 61.0 8 12 0.00033 0.45 10.1 0.2 3 20 489 507 487 508 0.90 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF211-208 - 628 9.1e-10 38.0 61.0 9 12 0.00068 0.94 9.1 0.1 3 20 517 535 515 536 0.82 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF211-208 - 628 9.1e-10 38.0 61.0 10 12 0.044 60 3.4 0.8 4 14 546 556 544 564 0.82 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF211-208 - 628 9.1e-10 38.0 61.0 11 12 0.00025 0.35 10.5 0.2 3 20 573 591 571 592 0.86 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF211-208 - 628 9.1e-10 38.0 61.0 12 12 0.0065 9 6.0 0.6 3 12 601 610 599 619 0.90 Ubiquitin-Binding Zinc Finger zf-C2H2_jaz PF12171.8 27 ZNF211-208 - 628 4.6e-07 30.0 48.0 1 11 0.26 3.5e+02 1.6 0.6 6 22 203 219 202 222 0.89 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF211-208 - 628 4.6e-07 30.0 48.0 2 11 0.72 1e+03 0.2 0.4 2 11 349 358 348 359 0.89 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF211-208 - 628 4.6e-07 30.0 48.0 3 11 0.0065 8.9 6.7 0.1 2 22 377 397 376 397 0.90 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF211-208 - 628 4.6e-07 30.0 48.0 4 11 0.0054 7.5 7.0 0.0 2 21 405 424 404 425 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF211-208 - 628 4.6e-07 30.0 48.0 5 11 0.059 81 3.7 0.3 2 14 433 445 432 453 0.76 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF211-208 - 628 4.6e-07 30.0 48.0 6 11 0.008 11 6.4 0.1 2 20 461 479 460 481 0.86 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF211-208 - 628 4.6e-07 30.0 48.0 7 11 0.03 41 4.6 0.4 2 22 489 509 488 509 0.91 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF211-208 - 628 4.6e-07 30.0 48.0 8 11 0.0001 0.14 12.5 0.1 2 22 517 537 516 537 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF211-208 - 628 4.6e-07 30.0 48.0 9 11 0.019 27 5.2 0.6 3 22 546 565 544 565 0.90 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF211-208 - 628 4.6e-07 30.0 48.0 10 11 0.0011 1.5 9.2 0.0 2 21 573 592 572 593 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF211-208 - 628 4.6e-07 30.0 48.0 11 11 0.54 7.5e+02 0.6 0.4 4 21 603 620 600 621 0.85 Zinc-finger double-stranded RNA-binding # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF211-208.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF211-208.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF211-208.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF211-208.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF211-208.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:01:30 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF211-209.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF211-209.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF211-209.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF211-209.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF211-209.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:01:31 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF211-210.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF211-210.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF211-210.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF211-210.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF211-210.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:01:31 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZNF211-211 - 616 2.2e-90 293.4 93.9 1 17 0.89 1.1e+03 0.3 0.6 5 17 176 192 175 194 0.84 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF211-211 - 616 2.2e-90 293.4 93.9 2 17 0.099 1.3e+02 3.3 0.1 1 15 201 215 201 218 0.90 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF211-211 - 616 2.2e-90 293.4 93.9 3 17 0.047 61 4.3 0.1 7 18 229 240 223 246 0.84 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF211-211 - 616 2.2e-90 293.4 93.9 4 17 1.7 2.2e+03 -0.6 0.0 8 24 258 274 253 276 0.76 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF211-211 - 616 2.2e-90 293.4 93.9 5 17 1.2 1.6e+03 -0.1 0.1 19 26 285 292 283 292 0.90 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF211-211 - 616 2.2e-90 293.4 93.9 6 17 0.0034 4.3 7.9 0.3 12 25 306 319 302 320 0.83 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF211-211 - 616 2.2e-90 293.4 93.9 7 17 7e-09 9e-06 25.9 0.7 1 25 323 347 323 348 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF211-211 - 616 2.2e-90 293.4 93.9 8 17 6.3e-11 8.1e-08 32.4 0.3 5 25 355 375 352 376 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF211-211 - 616 2.2e-90 293.4 93.9 9 17 2.4e-11 3.1e-08 33.7 0.3 1 25 379 403 379 404 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF211-211 - 616 2.2e-90 293.4 93.9 10 17 7.8e-13 1e-09 38.4 0.3 1 25 407 431 407 432 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF211-211 - 616 2.2e-90 293.4 93.9 11 17 2.1e-11 2.7e-08 33.9 0.7 2 25 436 459 435 460 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF211-211 - 616 2.2e-90 293.4 93.9 12 17 3.9e-11 4.9e-08 33.0 1.8 3 26 465 488 463 488 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF211-211 - 616 2.2e-90 293.4 93.9 13 17 8.6e-10 1.1e-06 28.8 1.6 2 26 492 516 491 516 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF211-211 - 616 2.2e-90 293.4 93.9 14 17 2e-11 2.6e-08 33.9 1.3 1 25 519 543 519 544 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF211-211 - 616 2.2e-90 293.4 93.9 15 17 9.2e-13 1.2e-09 38.2 0.2 1 25 547 571 547 572 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF211-211 - 616 2.2e-90 293.4 93.9 16 17 4.5e-11 5.8e-08 32.8 1.0 2 25 576 599 575 600 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF211-211 - 616 2.2e-90 293.4 93.9 17 17 0.017 22 5.7 0.1 3 14 605 616 604 616 0.89 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZNF211-211 - 616 1.9e-64 210.6 102.3 1 13 0.00017 0.22 12.1 1.1 4 23 190 209 184 209 0.89 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF211-211 - 616 1.9e-64 210.6 102.3 2 13 0.4 5.2e+02 1.4 0.0 5 17 285 297 282 298 0.85 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF211-211 - 616 1.9e-64 210.6 102.3 3 13 3.7e-06 0.0048 17.3 4.5 1 23 309 331 309 331 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF211-211 - 616 1.9e-64 210.6 102.3 4 13 2e-07 0.00026 21.3 1.1 1 23 337 359 337 359 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF211-211 - 616 1.9e-64 210.6 102.3 5 13 1.9e-08 2.5e-05 24.5 0.4 1 23 365 387 365 387 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF211-211 - 616 1.9e-64 210.6 102.3 6 13 4e-10 5.1e-07 29.8 0.7 1 23 393 415 393 415 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF211-211 - 616 1.9e-64 210.6 102.3 7 13 1.6e-08 2.1e-05 24.7 0.8 1 23 421 443 421 443 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF211-211 - 616 1.9e-64 210.6 102.3 8 13 1.5e-08 1.9e-05 24.9 4.3 1 23 449 471 449 471 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF211-211 - 616 1.9e-64 210.6 102.3 9 13 5.6e-08 7.2e-05 23.0 2.9 1 23 477 499 477 499 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF211-211 - 616 1.9e-64 210.6 102.3 10 13 1.5e-10 1.9e-07 31.1 1.7 1 23 505 527 505 527 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF211-211 - 616 1.9e-64 210.6 102.3 11 13 1.3e-06 0.0016 18.8 2.4 2 23 534 555 533 555 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF211-211 - 616 1.9e-64 210.6 102.3 12 13 1.9e-09 2.4e-06 27.7 0.7 1 23 561 583 561 583 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF211-211 - 616 1.9e-64 210.6 102.3 13 13 2.1e-05 0.027 14.9 1.7 1 23 589 611 589 611 0.99 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZNF211-211 - 616 3.6e-35 117.6 106.6 1 13 0.49 6.3e+02 1.7 0.3 3 19 164 180 163 183 0.85 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF211-211 - 616 3.6e-35 117.6 106.6 2 13 0.05 65 4.8 0.5 6 23 192 209 184 210 0.82 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF211-211 - 616 3.6e-35 117.6 106.6 3 13 0.0015 1.9 9.6 4.5 1 23 309 331 309 332 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF211-211 - 616 3.6e-35 117.6 106.6 4 13 0.00055 0.7 10.9 0.9 1 23 337 359 337 360 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF211-211 - 616 3.6e-35 117.6 106.6 5 13 5.8e-07 0.00074 20.2 0.5 1 23 365 387 365 388 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF211-211 - 616 3.6e-35 117.6 106.6 6 13 4.5e-06 0.0058 17.4 0.6 1 23 393 415 393 416 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF211-211 - 616 3.6e-35 117.6 106.6 7 13 9.8e-06 0.012 16.3 0.9 1 23 421 443 421 444 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF211-211 - 616 3.6e-35 117.6 106.6 8 13 1.2e-05 0.016 16.0 3.4 1 23 449 471 449 472 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF211-211 - 616 3.6e-35 117.6 106.6 9 13 1.2e-05 0.015 16.1 2.9 1 23 477 499 477 500 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF211-211 - 616 3.6e-35 117.6 106.6 10 13 1.3e-05 0.017 15.9 1.5 1 23 505 527 505 528 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF211-211 - 616 3.6e-35 117.6 106.6 11 13 2e-06 0.0026 18.4 2.7 2 23 534 555 533 556 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF211-211 - 616 3.6e-35 117.6 106.6 12 13 1.2e-06 0.0016 19.1 0.8 1 23 561 583 561 584 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF211-211 - 616 3.6e-35 117.6 106.6 13 13 4.7e-06 0.0061 17.3 1.5 1 23 589 611 589 612 0.93 C2H2-type zinc finger KRAB PF01352.27 42 ZNF211-211 - 616 5.1e-22 77.2 1.4 1 1 8.3e-25 1.1e-21 76.2 1.4 1 42 32 73 32 73 0.99 KRAB box zf-C2H2_6 PF13912.6 27 ZNF211-211 - 616 1.7e-20 72.5 102.7 1 13 0.89 1.1e+03 -0.3 0.5 6 22 191 207 190 209 0.62 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF211-211 - 616 1.7e-20 72.5 102.7 2 13 2.7 3.5e+03 -1.8 0.0 7 13 286 292 285 296 0.79 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF211-211 - 616 1.7e-20 72.5 102.7 3 13 0.19 2.4e+02 1.9 2.8 2 9 309 316 308 333 0.86 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF211-211 - 616 1.7e-20 72.5 102.7 4 13 0.00072 0.92 9.6 1.6 2 16 337 351 337 360 0.83 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF211-211 - 616 1.7e-20 72.5 102.7 5 13 1.1e-08 1.5e-05 24.9 0.5 2 24 365 387 365 390 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF211-211 - 616 1.7e-20 72.5 102.7 6 13 2.4e-05 0.031 14.3 0.9 2 24 393 415 393 418 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF211-211 - 616 1.7e-20 72.5 102.7 7 13 7.6e-05 0.097 12.7 1.0 2 12 421 431 421 443 0.85 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF211-211 - 616 1.7e-20 72.5 102.7 8 13 3e-06 0.0039 17.2 3.1 2 24 449 471 449 474 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF211-211 - 616 1.7e-20 72.5 102.7 9 13 0.0014 1.7 8.7 2.6 2 12 477 487 477 500 0.83 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF211-211 - 616 1.7e-20 72.5 102.7 10 13 0.0072 9.3 6.4 1.4 2 12 505 515 505 528 0.79 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF211-211 - 616 1.7e-20 72.5 102.7 11 13 0.00011 0.14 12.2 3.0 3 24 534 555 534 558 0.92 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF211-211 - 616 1.7e-20 72.5 102.7 12 13 2e-06 0.0026 17.7 1.6 2 24 561 583 561 586 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF211-211 - 616 1.7e-20 72.5 102.7 13 13 0.0014 1.8 8.7 2.0 2 12 589 599 589 611 0.83 C2H2-type zinc finger Zn-ribbon_8 PF09723.10 40 ZNF211-211 - 616 1.6e-11 44.1 54.6 1 9 5.5 7e+03 -2.7 0.0 10 16 191 197 190 207 0.76 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF211-211 - 616 1.6e-11 44.1 54.6 2 9 0.11 1.3e+02 2.7 0.8 6 38 309 320 285 334 0.75 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF211-211 - 616 1.6e-11 44.1 54.6 3 9 7.1e-07 0.00091 19.3 1.6 6 36 337 374 336 378 0.88 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF211-211 - 616 1.6e-11 44.1 54.6 4 9 0.0031 4 7.7 0.2 6 19 393 406 392 416 0.82 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF211-211 - 616 1.6e-11 44.1 54.6 5 9 1.9e-05 0.024 14.7 2.4 6 38 421 460 420 462 0.88 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF211-211 - 616 1.6e-11 44.1 54.6 6 9 0.0013 1.7 8.8 0.3 6 22 477 493 476 499 0.83 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF211-211 - 616 1.6e-11 44.1 54.6 7 9 0.00038 0.49 10.5 1.9 6 34 505 540 504 543 0.87 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF211-211 - 616 1.6e-11 44.1 54.6 8 9 0.00053 0.68 10.1 4.4 6 34 561 596 560 598 0.82 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF211-211 - 616 1.6e-11 44.1 54.6 9 9 0.023 29 4.9 0.6 6 15 589 598 588 607 0.90 Zinc ribbon domain zf_UBZ PF18439.1 32 ZNF211-211 - 616 7.1e-10 38.3 61.0 1 12 0.14 1.8e+02 1.8 0.2 8 21 192 206 190 210 0.90 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF211-211 - 616 7.1e-10 38.3 61.0 2 12 0.16 2e+02 1.7 1.9 3 11 309 317 307 328 0.84 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF211-211 - 616 7.1e-10 38.3 61.0 3 12 0.093 1.2e+02 2.4 0.3 3 12 337 346 335 347 0.87 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF211-211 - 616 7.1e-10 38.3 61.0 4 12 0.00026 0.33 10.6 0.1 3 20 365 383 363 384 0.88 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF211-211 - 616 7.1e-10 38.3 61.0 5 12 0.0028 3.6 7.3 0.1 3 20 393 411 391 412 0.85 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF211-211 - 616 7.1e-10 38.3 61.0 6 12 0.00098 1.2 8.7 0.1 3 15 421 433 419 440 0.81 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF211-211 - 616 7.1e-10 38.3 61.0 7 12 0.022 28 4.4 0.5 4 16 450 462 448 467 0.79 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF211-211 - 616 7.1e-10 38.3 61.0 8 12 0.00035 0.44 10.2 0.2 3 20 477 495 475 496 0.90 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF211-211 - 616 7.1e-10 38.3 61.0 9 12 0.00072 0.92 9.2 0.1 3 20 505 523 503 524 0.82 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF211-211 - 616 7.1e-10 38.3 61.0 10 12 0.046 59 3.4 0.8 4 14 534 544 532 552 0.82 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF211-211 - 616 7.1e-10 38.3 61.0 11 12 0.00027 0.34 10.5 0.2 3 20 561 579 559 580 0.86 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF211-211 - 616 7.1e-10 38.3 61.0 12 12 0.0069 8.8 6.0 0.6 3 12 589 598 587 607 0.90 Ubiquitin-Binding Zinc Finger zf-C2H2_jaz PF12171.8 27 ZNF211-211 - 616 3.9e-07 30.2 48.0 1 11 0.27 3.5e+02 1.7 0.6 6 22 191 207 190 210 0.89 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF211-211 - 616 3.9e-07 30.2 48.0 2 11 0.76 9.7e+02 0.2 0.4 2 11 337 346 336 347 0.89 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF211-211 - 616 3.9e-07 30.2 48.0 3 11 0.0068 8.7 6.8 0.1 2 22 365 385 364 385 0.90 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF211-211 - 616 3.9e-07 30.2 48.0 4 11 0.0057 7.3 7.0 0.0 2 21 393 412 392 413 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF211-211 - 616 3.9e-07 30.2 48.0 5 11 0.062 79 3.7 0.3 2 14 421 433 420 441 0.76 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF211-211 - 616 3.9e-07 30.2 48.0 6 11 0.0085 11 6.5 0.1 2 20 449 467 448 469 0.86 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF211-211 - 616 3.9e-07 30.2 48.0 7 11 0.032 40 4.6 0.4 2 22 477 497 476 497 0.91 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF211-211 - 616 3.9e-07 30.2 48.0 8 11 0.00011 0.14 12.5 0.1 2 22 505 525 504 525 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF211-211 - 616 3.9e-07 30.2 48.0 9 11 0.02 26 5.2 0.6 3 22 534 553 532 553 0.90 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF211-211 - 616 3.9e-07 30.2 48.0 10 11 0.0011 1.5 9.2 0.0 2 21 561 580 560 581 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF211-211 - 616 3.9e-07 30.2 48.0 11 11 0.57 7.3e+02 0.6 0.4 4 21 591 608 588 609 0.85 Zinc-finger double-stranded RNA-binding # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF211-211.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF211-211.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF211-211.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF211-211.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF211-211.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:01:31 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF211-212.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF211-212.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF211-212.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF211-212.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF211-212.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:01:32 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-C2H2 PF00096.26 23 ZNF212-201 - 495 6.9e-16 57.7 31.3 1 4 1.1e-06 0.0014 18.9 0.7 1 23 316 338 316 338 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF212-201 - 495 6.9e-16 57.7 31.3 2 4 0.072 93 3.8 6.6 1 21 369 389 369 391 0.95 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF212-201 - 495 6.9e-16 57.7 31.3 3 4 2.7e-10 3.4e-07 30.3 0.7 3 23 429 449 427 449 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF212-201 - 495 6.9e-16 57.7 31.3 4 4 4.2e-07 0.00054 20.3 2.3 1 23 455 477 455 477 0.98 Zinc finger, C2H2 type KRAB PF01352.27 42 ZNF212-201 - 495 9.4e-13 47.6 2.6 1 3 4.4 5.7e+03 -2.9 0.2 32 38 111 117 110 118 0.87 KRAB box KRAB PF01352.27 42 ZNF212-201 - 495 9.4e-13 47.6 2.6 2 3 7.3e-16 9.4e-13 47.6 2.6 9 41 148 180 142 180 0.95 KRAB box KRAB PF01352.27 42 ZNF212-201 - 495 9.4e-13 47.6 2.6 3 3 0.41 5.3e+02 0.4 0.1 14 26 239 251 236 253 0.90 KRAB box zf-C2H2_4 PF13894.6 24 ZNF212-201 - 495 1.6e-11 44.0 31.1 1 4 5.2e-06 0.0067 17.2 0.8 1 23 316 338 316 339 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF212-201 - 495 1.6e-11 44.0 31.1 2 4 0.0048 6.1 8.0 6.6 1 21 369 389 369 391 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF212-201 - 495 1.6e-11 44.0 31.1 3 4 3.5e-06 0.0045 17.7 0.6 2 23 428 449 427 450 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF212-201 - 495 1.6e-11 44.0 31.1 4 4 9.4e-06 0.012 16.4 2.3 1 23 455 477 455 478 0.96 C2H2-type zinc finger DUF3669 PF12417.8 72 ZNF212-201 - 495 7.1e-09 35.7 0.2 1 1 1.6e-11 2.1e-08 34.3 0.1 2 71 42 110 41 111 0.89 Zinc finger protein zf-H2C2_2 PF13465.6 26 ZNF212-201 - 495 1.8e-08 34.5 0.2 1 7 0.0072 9.2 6.9 0.4 13 24 314 325 308 327 0.84 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF212-201 - 495 1.8e-08 34.5 0.2 2 7 1.2 1.5e+03 -0.1 0.1 2 11 331 340 330 341 0.82 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF212-201 - 495 1.8e-08 34.5 0.2 3 7 0.0068 8.8 7.0 0.9 11 25 364 379 359 380 0.79 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF212-201 - 495 1.8e-08 34.5 0.2 4 7 0.31 4e+02 1.7 0.1 1 14 383 396 383 401 0.88 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF212-201 - 495 1.8e-08 34.5 0.2 5 7 0.099 1.3e+02 3.3 0.2 17 26 429 438 426 438 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF212-201 - 495 1.8e-08 34.5 0.2 6 7 1.4e-11 1.8e-08 34.5 0.2 1 25 441 465 441 466 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF212-201 - 495 1.8e-08 34.5 0.2 7 7 6.1 7.9e+03 -2.4 1.3 1 12 469 480 469 481 0.78 Zinc-finger double domain zf-C2H2_6 PF13912.6 27 ZNF212-201 - 495 2.3e-07 30.7 29.7 1 5 2e-06 0.0025 17.8 1.2 2 24 316 338 316 340 0.96 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF212-201 - 495 2.3e-07 30.7 29.7 2 5 1.5e-05 0.019 14.9 5.2 2 26 369 393 368 394 0.95 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF212-201 - 495 2.3e-07 30.7 29.7 3 5 4.3 5.4e+03 -2.4 0.0 12 20 409 417 409 417 0.91 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF212-201 - 495 2.3e-07 30.7 29.7 4 5 0.02 26 5.0 0.1 3 12 428 437 428 442 0.92 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF212-201 - 495 2.3e-07 30.7 29.7 5 5 0.0065 8.4 6.5 3.0 2 25 455 478 455 480 0.80 C2H2-type zinc finger # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF212-201.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF212-201.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF212-201.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF212-201.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF212-201.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:01:32 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF212-202.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF212-202.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF212-202.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF212-202.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF212-202.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:01:33 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF212-203.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF212-203.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF212-203.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF212-203.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF212-203.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:01:33 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF212-204.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF212-204.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF212-204.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF212-204.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF212-204.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:01:33 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF212-205.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF212-205.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF212-205.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF212-205.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF212-205.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:01:34 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- SCAN PF02023.17 90 ZNF213-201 - 459 1e-42 143.9 1.1 1 1 4e-45 2.7e-42 142.5 1.1 1 87 41 127 41 130 0.98 SCAN domain zf-H2C2_2 PF13465.6 26 ZNF213-201 - 459 1.9e-36 122.9 22.0 1 5 0.0099 6.6 7.4 0.2 12 24 314 326 313 327 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF213-201 - 459 1.9e-36 122.9 22.0 2 5 7.8e-13 5.2e-10 39.3 2.0 1 25 331 355 331 356 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF213-201 - 459 1.9e-36 122.9 22.0 3 5 1.1e-11 7.3e-09 35.7 0.1 1 25 359 383 359 384 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF213-201 - 459 1.9e-36 122.9 22.0 4 5 6.5e-09 4.3e-06 26.9 0.1 2 25 388 411 387 411 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF213-201 - 459 1.9e-36 122.9 22.0 5 5 1.3e-08 8.5e-06 26.0 0.3 2 26 416 440 415 440 0.92 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZNF213-201 - 459 9.4e-27 92.0 30.1 1 5 1e-05 0.0067 16.8 1.3 1 23 317 339 317 339 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF213-201 - 459 9.4e-27 92.0 30.1 2 5 8.9e-09 5.9e-06 26.4 1.2 1 23 345 367 345 367 0.95 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF213-201 - 459 9.4e-27 92.0 30.1 3 5 1.4e-08 9.6e-06 25.8 0.4 1 23 373 395 373 395 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF213-201 - 459 9.4e-27 92.0 30.1 4 5 1.3e-06 0.00084 19.7 0.7 3 23 403 423 401 423 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF213-201 - 459 9.4e-27 92.0 30.1 5 5 1.8e-07 0.00012 22.3 0.7 3 23 431 451 429 451 0.97 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZNF213-201 - 459 8.1e-15 54.3 29.0 1 5 0.00031 0.21 12.5 1.1 1 23 317 339 317 340 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF213-201 - 459 8.1e-15 54.3 29.0 2 5 4.8e-06 0.0032 18.2 1.2 1 23 345 367 345 368 0.91 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF213-201 - 459 8.1e-15 54.3 29.0 3 5 2e-05 0.013 16.2 0.5 1 23 373 395 373 396 0.91 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF213-201 - 459 8.1e-15 54.3 29.0 4 5 8.3e-05 0.055 14.3 0.7 1 23 401 423 401 424 0.87 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF213-201 - 459 8.1e-15 54.3 29.0 5 5 0.001 0.66 11.0 0.4 2 23 430 451 429 452 0.91 C2H2-type zinc finger KRAB PF01352.27 42 ZNF213-201 - 459 3.8e-12 45.7 0.1 1 2 4.3e-13 2.8e-10 39.7 0.0 1 38 201 238 201 240 0.92 KRAB box KRAB PF01352.27 42 ZNF213-201 - 459 3.8e-12 45.7 0.1 2 2 0.089 59 3.4 0.2 5 20 266 281 264 285 0.82 KRAB box # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF213-201.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF213-201.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF213-201.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF213-201.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF213-201.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:01:34 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- SCAN PF02023.17 90 ZNF213-202 - 459 1e-42 143.9 1.1 1 1 4e-45 2.7e-42 142.5 1.1 1 87 41 127 41 130 0.98 SCAN domain zf-H2C2_2 PF13465.6 26 ZNF213-202 - 459 1.9e-36 122.9 22.0 1 5 0.0099 6.6 7.4 0.2 12 24 314 326 313 327 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF213-202 - 459 1.9e-36 122.9 22.0 2 5 7.8e-13 5.2e-10 39.3 2.0 1 25 331 355 331 356 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF213-202 - 459 1.9e-36 122.9 22.0 3 5 1.1e-11 7.3e-09 35.7 0.1 1 25 359 383 359 384 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF213-202 - 459 1.9e-36 122.9 22.0 4 5 6.5e-09 4.3e-06 26.9 0.1 2 25 388 411 387 411 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF213-202 - 459 1.9e-36 122.9 22.0 5 5 1.3e-08 8.5e-06 26.0 0.3 2 26 416 440 415 440 0.92 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZNF213-202 - 459 9.4e-27 92.0 30.1 1 5 1e-05 0.0067 16.8 1.3 1 23 317 339 317 339 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF213-202 - 459 9.4e-27 92.0 30.1 2 5 8.9e-09 5.9e-06 26.4 1.2 1 23 345 367 345 367 0.95 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF213-202 - 459 9.4e-27 92.0 30.1 3 5 1.4e-08 9.6e-06 25.8 0.4 1 23 373 395 373 395 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF213-202 - 459 9.4e-27 92.0 30.1 4 5 1.3e-06 0.00084 19.7 0.7 3 23 403 423 401 423 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF213-202 - 459 9.4e-27 92.0 30.1 5 5 1.8e-07 0.00012 22.3 0.7 3 23 431 451 429 451 0.97 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZNF213-202 - 459 8.1e-15 54.3 29.0 1 5 0.00031 0.21 12.5 1.1 1 23 317 339 317 340 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF213-202 - 459 8.1e-15 54.3 29.0 2 5 4.8e-06 0.0032 18.2 1.2 1 23 345 367 345 368 0.91 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF213-202 - 459 8.1e-15 54.3 29.0 3 5 2e-05 0.013 16.2 0.5 1 23 373 395 373 396 0.91 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF213-202 - 459 8.1e-15 54.3 29.0 4 5 8.3e-05 0.055 14.3 0.7 1 23 401 423 401 424 0.87 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF213-202 - 459 8.1e-15 54.3 29.0 5 5 0.001 0.66 11.0 0.4 2 23 430 451 429 452 0.91 C2H2-type zinc finger KRAB PF01352.27 42 ZNF213-202 - 459 3.8e-12 45.7 0.1 1 2 4.3e-13 2.8e-10 39.7 0.0 1 38 201 238 201 240 0.92 KRAB box KRAB PF01352.27 42 ZNF213-202 - 459 3.8e-12 45.7 0.1 2 2 0.089 59 3.4 0.2 5 20 266 281 264 285 0.82 KRAB box # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF213-202.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF213-202.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF213-202.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF213-202.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF213-202.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:01:34 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZNF213-203 - 301 1.8e-37 126.1 22.0 1 5 0.008 4 8.0 0.2 12 24 156 168 155 169 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF213-203 - 301 1.8e-37 126.1 22.0 2 5 6.1e-13 3e-10 40.0 2.0 1 25 173 197 173 198 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF213-203 - 301 1.8e-37 126.1 22.0 3 5 8.6e-12 4.3e-09 36.4 0.1 1 25 201 225 201 226 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF213-203 - 301 1.8e-37 126.1 22.0 4 5 5.1e-09 2.5e-06 27.6 0.1 2 25 230 253 229 253 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF213-203 - 301 1.8e-37 126.1 22.0 5 5 1e-08 5e-06 26.7 0.3 2 26 258 282 257 282 0.92 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZNF213-203 - 301 7e-28 95.5 30.1 1 5 7.9e-06 0.0039 17.6 1.3 1 23 159 181 159 181 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF213-203 - 301 7e-28 95.5 30.1 2 5 7e-09 3.5e-06 27.2 1.2 1 23 187 209 187 209 0.95 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF213-203 - 301 7e-28 95.5 30.1 3 5 1.1e-08 5.7e-06 26.5 0.4 1 23 215 237 215 237 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF213-203 - 301 7e-28 95.5 30.1 4 5 1e-06 0.0005 20.4 0.7 3 23 245 265 243 265 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF213-203 - 301 7e-28 95.5 30.1 5 5 1.4e-07 7.2e-05 23.0 0.7 3 23 273 293 271 293 0.97 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZNF213-203 - 301 9.7e-16 57.1 29.0 1 5 0.00024 0.12 13.3 1.1 1 23 159 181 159 182 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF213-203 - 301 9.7e-16 57.1 29.0 2 5 3.7e-06 0.0019 18.9 1.2 1 23 187 209 187 210 0.91 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF213-203 - 301 9.7e-16 57.1 29.0 3 5 1.6e-05 0.0078 17.0 0.5 1 23 215 237 215 238 0.91 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF213-203 - 301 9.7e-16 57.1 29.0 4 5 6.5e-05 0.032 15.0 0.7 1 23 243 265 243 266 0.87 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF213-203 - 301 9.7e-16 57.1 29.0 5 5 0.00078 0.39 11.7 0.4 2 23 272 293 271 294 0.91 C2H2-type zinc finger KRAB PF01352.27 42 ZNF213-203 - 301 1.4e-12 47.0 0.1 1 2 3.2e-13 1.6e-10 40.4 0.0 1 38 43 80 43 82 0.92 KRAB box KRAB PF01352.27 42 ZNF213-203 - 301 1.4e-12 47.0 0.1 2 2 0.071 36 4.1 0.2 5 20 108 123 106 127 0.82 KRAB box zf-C2H2_jaz PF12171.8 27 ZNF213-203 - 301 2.8e-07 30.6 11.5 1 5 0.86 4.3e+02 1.4 0.9 2 27 159 188 158 188 0.82 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF213-203 - 301 2.8e-07 30.6 11.5 2 5 5.2e-06 0.0026 18.0 0.1 2 21 187 206 186 206 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF213-203 - 301 2.8e-07 30.6 11.5 3 5 0.0043 2.2 8.7 0.0 2 22 215 235 214 235 0.90 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF213-203 - 301 2.8e-07 30.6 11.5 4 5 2.5 1.2e+03 -0.1 0.0 4 12 245 253 242 263 0.76 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF213-203 - 301 2.8e-07 30.6 11.5 5 5 0.011 5.3 7.4 0.1 4 21 273 290 270 291 0.86 Zinc-finger double-stranded RNA-binding # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF213-203.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF213-203.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF213-203.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF213-203.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF213-203.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:01:35 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF213-204.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF213-204.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF213-204.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF213-204.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF213-204.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:01:35 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZNF213-205 - 204 1.4e-38 129.6 22.0 1 5 0.0054 2.5 8.7 0.2 12 24 59 71 58 72 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF213-205 - 204 1.4e-38 129.6 22.0 2 5 3.9e-13 1.8e-10 40.8 2.0 1 25 76 100 76 101 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF213-205 - 204 1.4e-38 129.6 22.0 3 5 5.5e-12 2.5e-09 37.1 0.1 1 25 104 128 104 129 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF213-205 - 204 1.4e-38 129.6 22.0 4 5 3.3e-09 1.5e-06 28.4 0.1 2 25 133 156 132 156 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF213-205 - 204 1.4e-38 129.6 22.0 5 5 6.4e-09 2.9e-06 27.4 0.3 2 26 161 185 160 185 0.92 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZNF213-205 - 204 7e-29 98.7 30.1 1 5 5.1e-06 0.0023 18.3 1.3 1 23 62 84 62 84 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF213-205 - 204 7e-29 98.7 30.1 2 5 4.5e-09 2.1e-06 27.9 1.2 1 23 90 112 90 112 0.95 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF213-205 - 204 7e-29 98.7 30.1 3 5 7.3e-09 3.4e-06 27.2 0.4 1 23 118 140 118 140 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF213-205 - 204 7e-29 98.7 30.1 4 5 6.5e-07 0.0003 21.1 0.7 3 23 148 168 146 168 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF213-205 - 204 7e-29 98.7 30.1 5 5 9.3e-08 4.3e-05 23.7 0.7 3 23 176 196 174 196 0.97 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZNF213-205 - 204 8.3e-17 60.5 29.0 1 5 0.00015 0.071 14.0 1.1 1 23 62 84 62 85 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF213-205 - 204 8.3e-17 60.5 29.0 2 5 2.4e-06 0.0011 19.6 1.2 1 23 90 112 90 113 0.91 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF213-205 - 204 8.3e-17 60.5 29.0 3 5 1e-05 0.0046 17.7 0.5 1 23 118 140 118 141 0.91 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF213-205 - 204 8.3e-17 60.5 29.0 4 5 4.1e-05 0.019 15.8 0.7 1 23 146 168 146 169 0.87 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF213-205 - 204 8.3e-17 60.5 29.0 5 5 0.0005 0.23 12.4 0.4 2 23 175 196 174 197 0.91 C2H2-type zinc finger zf-C2H2_jaz PF12171.8 27 ZNF213-205 - 204 1.7e-08 34.6 10.6 1 5 0.43 2e+02 2.4 0.5 2 27 62 91 61 91 0.82 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF213-205 - 204 1.7e-08 34.6 10.6 2 5 3.4e-06 0.0016 18.7 0.1 2 21 90 109 89 109 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF213-205 - 204 1.7e-08 34.6 10.6 3 5 0.0028 1.3 9.4 0.0 2 22 118 138 117 138 0.90 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF213-205 - 204 1.7e-08 34.6 10.6 4 5 1.7 7.6e+02 0.6 0.0 4 12 148 156 145 166 0.75 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF213-205 - 204 1.7e-08 34.6 10.6 5 5 0.007 3.2 8.1 0.1 4 21 176 193 173 194 0.86 Zinc-finger double-stranded RNA-binding zf-met PF12874.7 25 ZNF213-205 - 204 3.9e-07 30.2 11.0 1 4 0.0016 0.72 10.3 0.1 2 19 91 108 90 110 0.91 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF213-205 - 204 3.9e-07 30.2 11.0 2 4 0.0016 0.76 10.3 0.5 1 21 118 138 118 141 0.91 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF213-205 - 204 3.9e-07 30.2 11.0 3 4 0.4 1.8e+02 2.7 0.0 3 19 148 164 146 167 0.85 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF213-205 - 204 3.9e-07 30.2 11.0 4 4 0.00065 0.3 11.5 0.2 3 19 176 192 174 194 0.92 Zinc-finger of C2H2 type # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF213-205.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF213-205.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF213-205.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF213-205.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF213-205.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:01:36 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- SCAN PF02023.17 90 ZNF213-206 - 459 1e-42 143.9 1.1 1 1 4e-45 2.7e-42 142.5 1.1 1 87 41 127 41 130 0.98 SCAN domain zf-H2C2_2 PF13465.6 26 ZNF213-206 - 459 1.9e-36 122.9 22.0 1 5 0.0099 6.6 7.4 0.2 12 24 314 326 313 327 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF213-206 - 459 1.9e-36 122.9 22.0 2 5 7.8e-13 5.2e-10 39.3 2.0 1 25 331 355 331 356 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF213-206 - 459 1.9e-36 122.9 22.0 3 5 1.1e-11 7.3e-09 35.7 0.1 1 25 359 383 359 384 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF213-206 - 459 1.9e-36 122.9 22.0 4 5 6.5e-09 4.3e-06 26.9 0.1 2 25 388 411 387 411 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF213-206 - 459 1.9e-36 122.9 22.0 5 5 1.3e-08 8.5e-06 26.0 0.3 2 26 416 440 415 440 0.92 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZNF213-206 - 459 9.4e-27 92.0 30.1 1 5 1e-05 0.0067 16.8 1.3 1 23 317 339 317 339 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF213-206 - 459 9.4e-27 92.0 30.1 2 5 8.9e-09 5.9e-06 26.4 1.2 1 23 345 367 345 367 0.95 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF213-206 - 459 9.4e-27 92.0 30.1 3 5 1.4e-08 9.6e-06 25.8 0.4 1 23 373 395 373 395 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF213-206 - 459 9.4e-27 92.0 30.1 4 5 1.3e-06 0.00084 19.7 0.7 3 23 403 423 401 423 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF213-206 - 459 9.4e-27 92.0 30.1 5 5 1.8e-07 0.00012 22.3 0.7 3 23 431 451 429 451 0.97 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZNF213-206 - 459 8.1e-15 54.3 29.0 1 5 0.00031 0.21 12.5 1.1 1 23 317 339 317 340 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF213-206 - 459 8.1e-15 54.3 29.0 2 5 4.8e-06 0.0032 18.2 1.2 1 23 345 367 345 368 0.91 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF213-206 - 459 8.1e-15 54.3 29.0 3 5 2e-05 0.013 16.2 0.5 1 23 373 395 373 396 0.91 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF213-206 - 459 8.1e-15 54.3 29.0 4 5 8.3e-05 0.055 14.3 0.7 1 23 401 423 401 424 0.87 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF213-206 - 459 8.1e-15 54.3 29.0 5 5 0.001 0.66 11.0 0.4 2 23 430 451 429 452 0.91 C2H2-type zinc finger KRAB PF01352.27 42 ZNF213-206 - 459 3.8e-12 45.7 0.1 1 2 4.3e-13 2.8e-10 39.7 0.0 1 38 201 238 201 240 0.92 KRAB box KRAB PF01352.27 42 ZNF213-206 - 459 3.8e-12 45.7 0.1 2 2 0.089 59 3.4 0.2 5 20 266 281 264 285 0.82 KRAB box # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF213-206.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF213-206.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF213-206.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF213-206.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF213-206.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:01:36 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZNF213-207 - 204 1.4e-38 129.6 22.0 1 5 0.0054 2.5 8.7 0.2 12 24 59 71 58 72 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF213-207 - 204 1.4e-38 129.6 22.0 2 5 3.9e-13 1.8e-10 40.8 2.0 1 25 76 100 76 101 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF213-207 - 204 1.4e-38 129.6 22.0 3 5 5.5e-12 2.5e-09 37.1 0.1 1 25 104 128 104 129 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF213-207 - 204 1.4e-38 129.6 22.0 4 5 3.3e-09 1.5e-06 28.4 0.1 2 25 133 156 132 156 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF213-207 - 204 1.4e-38 129.6 22.0 5 5 6.4e-09 2.9e-06 27.4 0.3 2 26 161 185 160 185 0.92 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZNF213-207 - 204 7e-29 98.7 30.1 1 5 5.1e-06 0.0023 18.3 1.3 1 23 62 84 62 84 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF213-207 - 204 7e-29 98.7 30.1 2 5 4.5e-09 2.1e-06 27.9 1.2 1 23 90 112 90 112 0.95 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF213-207 - 204 7e-29 98.7 30.1 3 5 7.3e-09 3.4e-06 27.2 0.4 1 23 118 140 118 140 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF213-207 - 204 7e-29 98.7 30.1 4 5 6.5e-07 0.0003 21.1 0.7 3 23 148 168 146 168 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF213-207 - 204 7e-29 98.7 30.1 5 5 9.3e-08 4.3e-05 23.7 0.7 3 23 176 196 174 196 0.97 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZNF213-207 - 204 8.3e-17 60.5 29.0 1 5 0.00015 0.071 14.0 1.1 1 23 62 84 62 85 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF213-207 - 204 8.3e-17 60.5 29.0 2 5 2.4e-06 0.0011 19.6 1.2 1 23 90 112 90 113 0.91 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF213-207 - 204 8.3e-17 60.5 29.0 3 5 1e-05 0.0046 17.7 0.5 1 23 118 140 118 141 0.91 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF213-207 - 204 8.3e-17 60.5 29.0 4 5 4.1e-05 0.019 15.8 0.7 1 23 146 168 146 169 0.87 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF213-207 - 204 8.3e-17 60.5 29.0 5 5 0.0005 0.23 12.4 0.4 2 23 175 196 174 197 0.91 C2H2-type zinc finger zf-C2H2_jaz PF12171.8 27 ZNF213-207 - 204 1.7e-08 34.6 10.6 1 5 0.43 2e+02 2.4 0.5 2 27 62 91 61 91 0.82 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF213-207 - 204 1.7e-08 34.6 10.6 2 5 3.4e-06 0.0016 18.7 0.1 2 21 90 109 89 109 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF213-207 - 204 1.7e-08 34.6 10.6 3 5 0.0028 1.3 9.4 0.0 2 22 118 138 117 138 0.90 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF213-207 - 204 1.7e-08 34.6 10.6 4 5 1.7 7.6e+02 0.6 0.0 4 12 148 156 145 166 0.75 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF213-207 - 204 1.7e-08 34.6 10.6 5 5 0.007 3.2 8.1 0.1 4 21 176 193 173 194 0.86 Zinc-finger double-stranded RNA-binding zf-met PF12874.7 25 ZNF213-207 - 204 3.9e-07 30.2 11.0 1 4 0.0016 0.72 10.3 0.1 2 19 91 108 90 110 0.91 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF213-207 - 204 3.9e-07 30.2 11.0 2 4 0.0016 0.76 10.3 0.5 1 21 118 138 118 141 0.91 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF213-207 - 204 3.9e-07 30.2 11.0 3 4 0.4 1.8e+02 2.7 0.0 3 19 148 164 146 167 0.85 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF213-207 - 204 3.9e-07 30.2 11.0 4 4 0.00065 0.3 11.5 0.2 3 19 176 192 174 194 0.92 Zinc-finger of C2H2 type # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF213-207.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF213-207.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF213-207.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF213-207.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF213-207.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:01:36 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- SCAN PF02023.17 90 ZNF213-208 - 459 1e-42 143.9 1.1 1 1 4e-45 2.7e-42 142.5 1.1 1 87 41 127 41 130 0.98 SCAN domain zf-H2C2_2 PF13465.6 26 ZNF213-208 - 459 1.9e-36 122.9 22.0 1 5 0.0099 6.6 7.4 0.2 12 24 314 326 313 327 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF213-208 - 459 1.9e-36 122.9 22.0 2 5 7.8e-13 5.2e-10 39.3 2.0 1 25 331 355 331 356 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF213-208 - 459 1.9e-36 122.9 22.0 3 5 1.1e-11 7.3e-09 35.7 0.1 1 25 359 383 359 384 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF213-208 - 459 1.9e-36 122.9 22.0 4 5 6.5e-09 4.3e-06 26.9 0.1 2 25 388 411 387 411 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF213-208 - 459 1.9e-36 122.9 22.0 5 5 1.3e-08 8.5e-06 26.0 0.3 2 26 416 440 415 440 0.92 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZNF213-208 - 459 9.4e-27 92.0 30.1 1 5 1e-05 0.0067 16.8 1.3 1 23 317 339 317 339 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF213-208 - 459 9.4e-27 92.0 30.1 2 5 8.9e-09 5.9e-06 26.4 1.2 1 23 345 367 345 367 0.95 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF213-208 - 459 9.4e-27 92.0 30.1 3 5 1.4e-08 9.6e-06 25.8 0.4 1 23 373 395 373 395 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF213-208 - 459 9.4e-27 92.0 30.1 4 5 1.3e-06 0.00084 19.7 0.7 3 23 403 423 401 423 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF213-208 - 459 9.4e-27 92.0 30.1 5 5 1.8e-07 0.00012 22.3 0.7 3 23 431 451 429 451 0.97 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZNF213-208 - 459 8.1e-15 54.3 29.0 1 5 0.00031 0.21 12.5 1.1 1 23 317 339 317 340 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF213-208 - 459 8.1e-15 54.3 29.0 2 5 4.8e-06 0.0032 18.2 1.2 1 23 345 367 345 368 0.91 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF213-208 - 459 8.1e-15 54.3 29.0 3 5 2e-05 0.013 16.2 0.5 1 23 373 395 373 396 0.91 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF213-208 - 459 8.1e-15 54.3 29.0 4 5 8.3e-05 0.055 14.3 0.7 1 23 401 423 401 424 0.87 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF213-208 - 459 8.1e-15 54.3 29.0 5 5 0.001 0.66 11.0 0.4 2 23 430 451 429 452 0.91 C2H2-type zinc finger KRAB PF01352.27 42 ZNF213-208 - 459 3.8e-12 45.7 0.1 1 2 4.3e-13 2.8e-10 39.7 0.0 1 38 201 238 201 240 0.92 KRAB box KRAB PF01352.27 42 ZNF213-208 - 459 3.8e-12 45.7 0.1 2 2 0.089 59 3.4 0.2 5 20 266 281 264 285 0.82 KRAB box # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF213-208.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF213-208.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF213-208.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF213-208.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF213-208.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:01:37 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZNF213-209 - 204 1.4e-38 129.6 22.0 1 5 0.0054 2.5 8.7 0.2 12 24 59 71 58 72 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF213-209 - 204 1.4e-38 129.6 22.0 2 5 3.9e-13 1.8e-10 40.8 2.0 1 25 76 100 76 101 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF213-209 - 204 1.4e-38 129.6 22.0 3 5 5.5e-12 2.5e-09 37.1 0.1 1 25 104 128 104 129 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF213-209 - 204 1.4e-38 129.6 22.0 4 5 3.3e-09 1.5e-06 28.4 0.1 2 25 133 156 132 156 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF213-209 - 204 1.4e-38 129.6 22.0 5 5 6.4e-09 2.9e-06 27.4 0.3 2 26 161 185 160 185 0.92 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZNF213-209 - 204 7e-29 98.7 30.1 1 5 5.1e-06 0.0023 18.3 1.3 1 23 62 84 62 84 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF213-209 - 204 7e-29 98.7 30.1 2 5 4.5e-09 2.1e-06 27.9 1.2 1 23 90 112 90 112 0.95 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF213-209 - 204 7e-29 98.7 30.1 3 5 7.3e-09 3.4e-06 27.2 0.4 1 23 118 140 118 140 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF213-209 - 204 7e-29 98.7 30.1 4 5 6.5e-07 0.0003 21.1 0.7 3 23 148 168 146 168 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF213-209 - 204 7e-29 98.7 30.1 5 5 9.3e-08 4.3e-05 23.7 0.7 3 23 176 196 174 196 0.97 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZNF213-209 - 204 8.3e-17 60.5 29.0 1 5 0.00015 0.071 14.0 1.1 1 23 62 84 62 85 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF213-209 - 204 8.3e-17 60.5 29.0 2 5 2.4e-06 0.0011 19.6 1.2 1 23 90 112 90 113 0.91 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF213-209 - 204 8.3e-17 60.5 29.0 3 5 1e-05 0.0046 17.7 0.5 1 23 118 140 118 141 0.91 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF213-209 - 204 8.3e-17 60.5 29.0 4 5 4.1e-05 0.019 15.8 0.7 1 23 146 168 146 169 0.87 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF213-209 - 204 8.3e-17 60.5 29.0 5 5 0.0005 0.23 12.4 0.4 2 23 175 196 174 197 0.91 C2H2-type zinc finger zf-C2H2_jaz PF12171.8 27 ZNF213-209 - 204 1.7e-08 34.6 10.6 1 5 0.43 2e+02 2.4 0.5 2 27 62 91 61 91 0.82 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF213-209 - 204 1.7e-08 34.6 10.6 2 5 3.4e-06 0.0016 18.7 0.1 2 21 90 109 89 109 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF213-209 - 204 1.7e-08 34.6 10.6 3 5 0.0028 1.3 9.4 0.0 2 22 118 138 117 138 0.90 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF213-209 - 204 1.7e-08 34.6 10.6 4 5 1.7 7.6e+02 0.6 0.0 4 12 148 156 145 166 0.75 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF213-209 - 204 1.7e-08 34.6 10.6 5 5 0.007 3.2 8.1 0.1 4 21 176 193 173 194 0.86 Zinc-finger double-stranded RNA-binding zf-met PF12874.7 25 ZNF213-209 - 204 3.9e-07 30.2 11.0 1 4 0.0016 0.72 10.3 0.1 2 19 91 108 90 110 0.91 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF213-209 - 204 3.9e-07 30.2 11.0 2 4 0.0016 0.76 10.3 0.5 1 21 118 138 118 141 0.91 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF213-209 - 204 3.9e-07 30.2 11.0 3 4 0.4 1.8e+02 2.7 0.0 3 19 148 164 146 167 0.85 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF213-209 - 204 3.9e-07 30.2 11.0 4 4 0.00065 0.3 11.5 0.2 3 19 176 192 174 194 0.92 Zinc-finger of C2H2 type # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF213-209.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF213-209.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF213-209.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF213-209.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF213-209.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:01:37 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZNF214-201 - 606 6.1e-75 244.6 93.2 1 13 0.059 51 4.6 3.1 5 25 237 257 234 258 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF214-201 - 606 6.1e-75 244.6 93.2 2 13 0.036 31 5.2 0.1 1 18 261 278 261 279 0.89 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF214-201 - 606 6.1e-75 244.6 93.2 3 13 2e-06 0.0017 18.7 0.2 5 25 293 313 292 314 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF214-201 - 606 6.1e-75 244.6 93.2 4 13 0.0028 2.4 8.8 0.9 4 18 320 336 317 337 0.82 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF214-201 - 606 6.1e-75 244.6 93.2 5 13 1.7e-08 1.4e-05 25.3 1.5 5 25 348 368 346 369 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF214-201 - 606 6.1e-75 244.6 93.2 6 13 1.6e-10 1.3e-07 31.7 1.2 5 25 376 396 373 397 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF214-201 - 606 6.1e-75 244.6 93.2 7 13 3.9e-09 3.3e-06 27.3 0.1 1 25 400 424 400 425 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF214-201 - 606 6.1e-75 244.6 93.2 8 13 1.7e-11 1.4e-08 34.8 0.5 1 26 428 453 428 453 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF214-201 - 606 6.1e-75 244.6 93.2 9 13 2.6e-12 2.2e-09 37.3 0.3 1 25 456 480 456 481 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF214-201 - 606 6.1e-75 244.6 93.2 10 13 3.6e-10 3.1e-07 30.5 2.5 5 25 488 508 484 509 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF214-201 - 606 6.1e-75 244.6 93.2 11 13 2e-09 1.7e-06 28.2 3.7 4 26 515 537 512 537 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF214-201 - 606 6.1e-75 244.6 93.2 12 13 4e-10 3.5e-07 30.4 2.2 5 26 544 565 540 565 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF214-201 - 606 6.1e-75 244.6 93.2 13 13 1e-06 0.00089 19.6 0.4 1 26 568 593 568 593 0.92 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZNF214-201 - 606 1e-59 195.8 97.2 1 12 0.00099 0.84 10.2 5.4 2 23 248 269 247 269 0.89 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF214-201 - 606 1e-59 195.8 97.2 2 12 1.8e-07 0.00015 22.0 1.7 1 23 303 325 303 325 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF214-201 - 606 1e-59 195.8 97.2 3 12 0.00057 0.49 11.0 0.5 5 23 334 352 332 352 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF214-201 - 606 1e-59 195.8 97.2 4 12 4.3e-08 3.6e-05 24.0 2.7 1 23 358 380 358 380 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF214-201 - 606 1e-59 195.8 97.2 5 12 5.5e-09 4.7e-06 26.7 0.3 1 23 386 408 386 408 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF214-201 - 606 1e-59 195.8 97.2 6 12 4.1e-10 3.5e-07 30.3 0.4 1 23 414 436 414 436 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF214-201 - 606 1e-59 195.8 97.2 7 12 2.1e-09 1.8e-06 28.1 1.6 1 23 442 464 442 464 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF214-201 - 606 1e-59 195.8 97.2 8 12 4e-08 3.4e-05 24.0 2.3 1 23 470 492 470 492 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF214-201 - 606 1e-59 195.8 97.2 9 12 7e-09 6e-06 26.4 1.2 1 23 498 520 498 520 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF214-201 - 606 1e-59 195.8 97.2 10 12 1.2e-08 1e-05 25.7 5.8 1 23 526 548 526 548 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF214-201 - 606 1e-59 195.8 97.2 11 12 2.4e-08 2.1e-05 24.7 1.0 1 23 554 576 554 576 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF214-201 - 606 1e-59 195.8 97.2 12 12 8.5 7.2e+03 -2.2 0.1 8 16 589 597 582 599 0.68 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZNF214-201 - 606 4.4e-21 73.7 109.3 1 12 0.0092 7.8 7.6 4.9 2 19 248 265 247 269 0.90 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF214-201 - 606 4.4e-21 73.7 109.3 2 12 2.9 2.5e+03 -0.2 0.2 3 23 277 297 275 298 0.85 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF214-201 - 606 4.4e-21 73.7 109.3 3 12 3.5e-05 0.03 15.2 1.5 1 23 303 325 303 326 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF214-201 - 606 4.4e-21 73.7 109.3 4 12 0.64 5.5e+02 1.9 0.1 6 23 335 352 333 353 0.74 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF214-201 - 606 4.4e-21 73.7 109.3 5 12 3.5e-05 0.03 15.1 2.4 1 23 358 380 358 381 0.89 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF214-201 - 606 4.4e-21 73.7 109.3 6 12 1.3e-05 0.011 16.5 0.3 1 23 386 408 386 409 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF214-201 - 606 4.4e-21 73.7 109.3 7 12 2e-05 0.017 15.9 0.3 1 23 414 436 414 437 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF214-201 - 606 4.4e-21 73.7 109.3 8 12 2.4e-05 0.02 15.7 1.0 1 23 442 464 442 465 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF214-201 - 606 4.4e-21 73.7 109.3 9 12 9e-06 0.0077 17.0 1.9 1 23 470 492 470 493 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF214-201 - 606 4.4e-21 73.7 109.3 10 12 1.3e-05 0.011 16.5 1.2 1 23 498 520 498 521 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF214-201 - 606 4.4e-21 73.7 109.3 11 12 0.0011 0.95 10.5 4.3 1 23 526 548 526 549 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF214-201 - 606 4.4e-21 73.7 109.3 12 12 0.00013 0.11 13.3 0.7 1 23 554 576 554 577 0.93 C2H2-type zinc finger KRAB PF01352.27 42 ZNF214-201 - 606 1.6e-20 72.5 2.1 1 2 1.9e-23 1.6e-20 72.5 2.1 2 41 3 42 2 43 0.97 KRAB box KRAB PF01352.27 42 ZNF214-201 - 606 1.6e-20 72.5 2.1 2 2 1.1 9.3e+02 -0.4 0.1 23 35 206 218 205 219 0.91 KRAB box Zn-ribbon_8 PF09723.10 40 ZNF214-201 - 606 3.2e-12 46.4 53.0 1 8 4.5 3.8e+03 -1.9 0.3 26 33 217 225 206 229 0.63 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF214-201 - 606 3.2e-12 46.4 53.0 2 8 0.0021 1.8 8.7 0.1 6 22 303 319 302 327 0.85 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF214-201 - 606 3.2e-12 46.4 53.0 3 8 1.4e-05 0.012 15.7 2.0 6 34 358 393 357 398 0.92 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF214-201 - 606 3.2e-12 46.4 53.0 4 8 0.00084 0.72 10.0 0.2 6 19 414 427 413 437 0.81 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF214-201 - 606 3.2e-12 46.4 53.0 5 8 2.1e-07 0.00018 21.5 2.0 6 34 442 477 441 482 0.89 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF214-201 - 606 3.2e-12 46.4 53.0 6 8 0.00016 0.14 12.3 4.9 6 34 498 533 497 536 0.92 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF214-201 - 606 3.2e-12 46.4 53.0 7 8 3.1e-05 0.026 14.6 2.2 6 34 526 561 525 564 0.91 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF214-201 - 606 3.2e-12 46.4 53.0 8 8 0.005 4.3 7.5 0.2 6 29 554 584 553 586 0.69 Zinc ribbon domain zf-C2H2_jaz PF12171.8 27 ZNF214-201 - 606 9.2e-09 35.4 48.3 1 10 0.0024 2 8.8 0.2 2 22 303 323 302 323 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF214-201 - 606 9.2e-09 35.4 48.3 2 10 2.8 2.4e+03 -1.0 0.1 5 21 333 349 330 350 0.83 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF214-201 - 606 9.2e-09 35.4 48.3 3 10 0.00089 0.76 10.1 0.3 2 22 358 378 357 378 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF214-201 - 606 9.2e-09 35.4 48.3 4 10 0.0082 7 7.1 0.0 2 21 386 405 385 406 0.90 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF214-201 - 606 9.2e-09 35.4 48.3 5 10 0.033 28 5.2 0.1 2 22 414 434 413 434 0.90 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF214-201 - 606 9.2e-09 35.4 48.3 6 10 0.0057 4.8 7.6 0.1 2 22 442 462 441 462 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF214-201 - 606 9.2e-09 35.4 48.3 7 10 0.00022 0.19 12.1 0.0 2 22 470 490 469 490 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF214-201 - 606 9.2e-09 35.4 48.3 8 10 0.017 15 6.0 0.1 2 20 498 516 497 518 0.78 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF214-201 - 606 9.2e-09 35.4 48.3 9 10 0.013 11 6.5 0.7 2 22 526 546 525 546 0.91 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF214-201 - 606 9.2e-09 35.4 48.3 10 10 0.091 78 3.7 0.1 6 22 558 574 553 574 0.86 Zinc-finger double-stranded RNA-binding zf_UBZ PF18439.1 32 ZNF214-201 - 606 3.1e-08 33.1 44.5 1 10 2.4 2.1e+03 -1.6 1.9 4 14 248 258 246 265 0.83 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF214-201 - 606 3.1e-08 33.1 44.5 2 10 0.058 49 3.6 0.1 3 14 303 314 302 322 0.81 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF214-201 - 606 3.1e-08 33.1 44.5 3 10 0.03 26 4.5 0.1 3 14 358 369 356 373 0.83 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF214-201 - 606 3.1e-08 33.1 44.5 4 10 0.0029 2.5 7.8 0.1 3 15 386 398 384 405 0.83 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF214-201 - 606 3.1e-08 33.1 44.5 5 10 0.0057 4.9 6.8 0.2 2 14 413 425 412 433 0.76 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF214-201 - 606 3.1e-08 33.1 44.5 6 10 0.0021 1.8 8.3 0.2 3 19 442 459 440 461 0.81 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF214-201 - 606 3.1e-08 33.1 44.5 7 10 0.00023 0.2 11.3 0.2 3 21 470 489 468 489 0.86 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF214-201 - 606 3.1e-08 33.1 44.5 8 10 0.0064 5.5 6.7 0.1 3 14 498 509 496 516 0.86 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF214-201 - 606 3.1e-08 33.1 44.5 9 10 0.035 30 4.3 0.2 3 15 526 538 524 545 0.84 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF214-201 - 606 3.1e-08 33.1 44.5 10 10 0.0042 3.6 7.3 0.1 3 15 554 566 552 573 0.81 Ubiquitin-Binding Zinc Finger # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF214-201.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF214-201.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF214-201.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF214-201.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF214-201.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:01:38 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF214-202.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF214-202.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF214-202.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF214-202.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF214-202.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:01:38 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF214-203.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF214-203.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF214-203.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF214-203.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF214-203.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:01:38 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZNF214-204 - 617 8e-75 244.2 93.2 1 13 0.06 52 4.5 3.1 5 25 248 268 245 269 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF214-204 - 617 8e-75 244.2 93.2 2 13 0.037 32 5.2 0.1 1 18 272 289 272 290 0.89 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF214-204 - 617 8e-75 244.2 93.2 3 13 2.1e-06 0.0018 18.6 0.2 5 25 304 324 303 325 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF214-204 - 617 8e-75 244.2 93.2 4 13 0.0028 2.4 8.7 0.9 4 18 331 347 328 348 0.82 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF214-204 - 617 8e-75 244.2 93.2 5 13 1.7e-08 1.5e-05 25.2 1.5 5 25 359 379 357 380 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF214-204 - 617 8e-75 244.2 93.2 6 13 1.6e-10 1.4e-07 31.6 1.2 5 25 387 407 384 408 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF214-204 - 617 8e-75 244.2 93.2 7 13 4e-09 3.4e-06 27.2 0.1 1 25 411 435 411 436 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF214-204 - 617 8e-75 244.2 93.2 8 13 1.7e-11 1.4e-08 34.7 0.5 1 26 439 464 439 464 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF214-204 - 617 8e-75 244.2 93.2 9 13 2.6e-12 2.2e-09 37.3 0.3 1 25 467 491 467 492 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF214-204 - 617 8e-75 244.2 93.2 10 13 3.7e-10 3.1e-07 30.5 2.5 5 25 499 519 495 520 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF214-204 - 617 8e-75 244.2 93.2 11 13 2e-09 1.7e-06 28.1 3.7 4 26 526 548 523 548 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF214-204 - 617 8e-75 244.2 93.2 12 13 4.1e-10 3.5e-07 30.3 2.2 5 26 555 576 551 576 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF214-204 - 617 8e-75 244.2 93.2 13 13 1.1e-06 0.00091 19.5 0.4 1 26 579 604 579 604 0.92 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZNF214-204 - 617 1.3e-59 195.5 97.2 1 12 0.001 0.86 10.2 5.4 2 23 259 280 258 280 0.89 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF214-204 - 617 1.3e-59 195.5 97.2 2 12 1.8e-07 0.00015 22.0 1.7 1 23 314 336 314 336 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF214-204 - 617 1.3e-59 195.5 97.2 3 12 0.00058 0.5 10.9 0.5 5 23 345 363 343 363 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF214-204 - 617 1.3e-59 195.5 97.2 4 12 4.4e-08 3.7e-05 23.9 2.7 1 23 369 391 369 391 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF214-204 - 617 1.3e-59 195.5 97.2 5 12 5.7e-09 4.8e-06 26.7 0.3 1 23 397 419 397 419 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF214-204 - 617 1.3e-59 195.5 97.2 6 12 4.2e-10 3.6e-07 30.3 0.4 1 23 425 447 425 447 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF214-204 - 617 1.3e-59 195.5 97.2 7 12 2.2e-09 1.9e-06 28.0 1.6 1 23 453 475 453 475 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF214-204 - 617 1.3e-59 195.5 97.2 8 12 4.1e-08 3.5e-05 24.0 2.3 1 23 481 503 481 503 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF214-204 - 617 1.3e-59 195.5 97.2 9 12 7.1e-09 6.1e-06 26.4 1.2 1 23 509 531 509 531 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF214-204 - 617 1.3e-59 195.5 97.2 10 12 1.2e-08 1e-05 25.7 5.8 1 23 537 559 537 559 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF214-204 - 617 1.3e-59 195.5 97.2 11 12 2.5e-08 2.1e-05 24.7 1.0 1 23 565 587 565 587 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF214-204 - 617 1.3e-59 195.5 97.2 12 12 8.7 7.4e+03 -2.2 0.1 8 16 600 608 593 610 0.68 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZNF214-204 - 617 5.8e-21 73.4 109.3 1 12 0.0094 8 7.6 4.9 2 19 259 276 258 280 0.90 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF214-204 - 617 5.8e-21 73.4 109.3 2 12 3 2.6e+03 -0.2 0.2 3 23 288 308 286 309 0.85 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF214-204 - 617 5.8e-21 73.4 109.3 3 12 3.5e-05 0.03 15.1 1.5 1 23 314 336 314 337 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF214-204 - 617 5.8e-21 73.4 109.3 4 12 0.65 5.6e+02 1.9 0.1 6 23 346 363 344 364 0.74 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF214-204 - 617 5.8e-21 73.4 109.3 5 12 3.6e-05 0.031 15.1 2.4 1 23 369 391 369 392 0.89 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF214-204 - 617 5.8e-21 73.4 109.3 6 12 1.3e-05 0.011 16.5 0.3 1 23 397 419 397 420 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF214-204 - 617 5.8e-21 73.4 109.3 7 12 2e-05 0.017 15.9 0.3 1 23 425 447 425 448 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF214-204 - 617 5.8e-21 73.4 109.3 8 12 2.4e-05 0.021 15.6 1.0 1 23 453 475 453 476 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF214-204 - 617 5.8e-21 73.4 109.3 9 12 9.2e-06 0.0078 17.0 1.9 1 23 481 503 481 504 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF214-204 - 617 5.8e-21 73.4 109.3 10 12 1.4e-05 0.012 16.4 1.2 1 23 509 531 509 532 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF214-204 - 617 5.8e-21 73.4 109.3 11 12 0.0011 0.97 10.4 4.3 1 23 537 559 537 560 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF214-204 - 617 5.8e-21 73.4 109.3 12 12 0.00014 0.12 13.3 0.7 1 23 565 587 565 588 0.93 C2H2-type zinc finger KRAB PF01352.27 42 ZNF214-204 - 617 1.6e-20 72.4 2.1 1 2 1.9e-23 1.6e-20 72.4 2.1 2 41 14 53 13 54 0.97 KRAB box KRAB PF01352.27 42 ZNF214-204 - 617 1.6e-20 72.4 2.1 2 2 1.1 9.5e+02 -0.4 0.1 23 35 217 229 216 230 0.91 KRAB box Zn-ribbon_8 PF09723.10 40 ZNF214-204 - 617 4.5e-12 45.9 53.3 1 8 5.1 4.3e+03 -2.1 0.4 26 33 228 236 217 239 0.62 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF214-204 - 617 4.5e-12 45.9 53.3 2 8 0.0022 1.9 8.7 0.1 6 22 314 330 313 338 0.85 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF214-204 - 617 4.5e-12 45.9 53.3 3 8 1.4e-05 0.012 15.7 2.0 6 34 369 404 368 409 0.92 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF214-204 - 617 4.5e-12 45.9 53.3 4 8 0.00086 0.73 10.0 0.2 6 19 425 438 424 448 0.81 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF214-204 - 617 4.5e-12 45.9 53.3 5 8 2.2e-07 0.00019 21.5 2.0 6 34 453 488 452 493 0.89 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF214-204 - 617 4.5e-12 45.9 53.3 6 8 0.0002 0.17 12.0 5.1 6 34 509 544 508 547 0.92 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF214-204 - 617 4.5e-12 45.9 53.3 7 8 3.6e-05 0.031 14.4 2.4 6 34 537 572 536 575 0.91 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF214-204 - 617 4.5e-12 45.9 53.3 8 8 0.005 4.3 7.5 0.2 6 27 565 592 564 597 0.69 Zinc ribbon domain zf-C2H2_jaz PF12171.8 27 ZNF214-204 - 617 1.1e-08 35.1 48.3 1 10 0.0024 2.1 8.8 0.2 2 22 314 334 313 334 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF214-204 - 617 1.1e-08 35.1 48.3 2 10 2.8 2.4e+03 -1.0 0.1 5 21 344 360 341 361 0.83 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF214-204 - 617 1.1e-08 35.1 48.3 3 10 0.00091 0.78 10.1 0.3 2 22 369 389 368 389 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF214-204 - 617 1.1e-08 35.1 48.3 4 10 0.0084 7.2 7.0 0.0 2 21 397 416 396 417 0.90 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF214-204 - 617 1.1e-08 35.1 48.3 5 10 0.033 28 5.1 0.1 2 22 425 445 424 445 0.90 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF214-204 - 617 1.1e-08 35.1 48.3 6 10 0.0058 4.9 7.5 0.1 2 22 453 473 452 473 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF214-204 - 617 1.1e-08 35.1 48.3 7 10 0.00022 0.19 12.0 0.0 2 22 481 501 480 501 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF214-204 - 617 1.1e-08 35.1 48.3 8 10 0.018 15 6.0 0.1 2 20 509 527 508 529 0.78 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF214-204 - 617 1.1e-08 35.1 48.3 9 10 0.013 11 6.4 0.7 2 22 537 557 536 557 0.91 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF214-204 - 617 1.1e-08 35.1 48.3 10 10 0.093 80 3.7 0.1 6 22 569 585 564 585 0.86 Zinc-finger double-stranded RNA-binding zf_UBZ PF18439.1 32 ZNF214-204 - 617 3.8e-08 32.8 44.5 1 10 2.5 2.1e+03 -1.6 1.9 4 14 259 269 257 276 0.83 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF214-204 - 617 3.8e-08 32.8 44.5 2 10 0.059 50 3.6 0.1 3 14 314 325 313 333 0.81 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF214-204 - 617 3.8e-08 32.8 44.5 3 10 0.031 26 4.5 0.1 3 14 369 380 367 384 0.83 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF214-204 - 617 3.8e-08 32.8 44.5 4 10 0.003 2.5 7.7 0.1 3 15 397 409 395 416 0.83 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF214-204 - 617 3.8e-08 32.8 44.5 5 10 0.0059 5 6.8 0.2 2 14 424 436 423 444 0.76 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF214-204 - 617 3.8e-08 32.8 44.5 6 10 0.0021 1.8 8.2 0.2 3 19 453 470 451 472 0.81 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF214-204 - 617 3.8e-08 32.8 44.5 7 10 0.00024 0.2 11.3 0.2 3 21 481 500 479 500 0.86 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF214-204 - 617 3.8e-08 32.8 44.5 8 10 0.0065 5.6 6.7 0.1 3 14 509 520 507 527 0.86 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF214-204 - 617 3.8e-08 32.8 44.5 9 10 0.036 30 4.3 0.2 3 15 537 549 535 556 0.84 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF214-204 - 617 3.8e-08 32.8 44.5 10 10 0.0043 3.7 7.2 0.1 3 15 565 577 563 584 0.81 Ubiquitin-Binding Zinc Finger # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF214-204.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF214-204.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF214-204.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF214-204.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF214-204.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:01:39 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- SCAN PF02023.17 90 ZNF215-201 - 517 1.2e-37 127.6 2.9 1 1 1.8e-40 2.3e-37 126.7 2.9 1 88 44 131 44 133 0.97 SCAN domain zf-C2H2 PF00096.26 23 ZNF215-201 - 517 3e-23 80.9 43.0 1 5 4.8e-08 6.1e-05 23.2 1.5 1 23 379 401 379 401 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF215-201 - 517 3e-23 80.9 43.0 2 5 1.5e-08 1.9e-05 24.9 3.1 1 23 407 429 407 429 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF215-201 - 517 3e-23 80.9 43.0 3 5 0.06 76 4.0 0.4 3 14 435 448 434 449 0.82 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF215-201 - 517 3e-23 80.9 43.0 4 5 1.1e-09 1.4e-06 28.4 0.7 1 23 462 484 462 484 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF215-201 - 517 3e-23 80.9 43.0 5 5 1.7e-09 2.2e-06 27.8 1.9 1 23 490 512 490 512 0.98 Zinc finger, C2H2 type zf-H2C2_2 PF13465.6 26 ZNF215-201 - 517 6.2e-23 80.1 37.7 1 6 2.2e-06 0.0028 18.0 1.0 4 24 368 388 367 388 0.98 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF215-201 - 517 6.2e-23 80.1 37.7 2 6 9.2e-11 1.2e-07 31.8 0.3 2 25 394 417 393 418 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF215-201 - 517 6.2e-23 80.1 37.7 3 6 0.026 34 5.1 1.2 1 25 421 445 421 446 0.83 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF215-201 - 517 6.2e-23 80.1 37.7 4 6 0.00019 0.25 11.9 0.3 9 25 456 472 454 473 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF215-201 - 517 6.2e-23 80.1 37.7 5 6 4.5e-11 5.8e-08 32.8 0.7 2 25 477 500 476 501 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF215-201 - 517 6.2e-23 80.1 37.7 6 6 0.033 43 4.8 0.4 1 13 504 516 504 517 0.89 Zinc-finger double domain KRAB PF01352.27 42 ZNF215-201 - 517 5.5e-21 73.9 0.4 1 1 8.3e-24 1.1e-20 73.0 0.4 1 41 163 203 163 203 0.98 KRAB box zf-C2H2_4 PF13894.6 24 ZNF215-201 - 517 8.2e-10 38.7 40.4 1 6 1.6 2.1e+03 0.1 0.0 9 22 196 210 195 212 0.85 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF215-201 - 517 8.2e-10 38.7 40.4 2 6 1.3e-05 0.017 16.0 1.5 1 23 379 401 379 402 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF215-201 - 517 8.2e-10 38.7 40.4 3 6 2.3e-05 0.03 15.2 1.4 1 23 407 429 407 430 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF215-201 - 517 8.2e-10 38.7 40.4 4 6 1.5 1.9e+03 0.2 0.3 3 13 435 447 433 450 0.71 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF215-201 - 517 8.2e-10 38.7 40.4 5 6 1.4e-05 0.018 15.8 0.5 1 23 462 484 462 485 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF215-201 - 517 8.2e-10 38.7 40.4 6 6 1e-05 0.013 16.3 1.9 1 23 490 512 490 513 0.96 C2H2-type zinc finger # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF215-201.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF215-201.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF215-201.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF215-201.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF215-201.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:01:39 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- SCAN PF02023.17 90 ZNF215-202 - 517 1.2e-37 127.6 2.9 1 1 1.8e-40 2.3e-37 126.7 2.9 1 88 44 131 44 133 0.97 SCAN domain zf-C2H2 PF00096.26 23 ZNF215-202 - 517 3e-23 80.9 43.0 1 5 4.8e-08 6.1e-05 23.2 1.5 1 23 379 401 379 401 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF215-202 - 517 3e-23 80.9 43.0 2 5 1.5e-08 1.9e-05 24.9 3.1 1 23 407 429 407 429 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF215-202 - 517 3e-23 80.9 43.0 3 5 0.06 76 4.0 0.4 3 14 435 448 434 449 0.82 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF215-202 - 517 3e-23 80.9 43.0 4 5 1.1e-09 1.4e-06 28.4 0.7 1 23 462 484 462 484 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF215-202 - 517 3e-23 80.9 43.0 5 5 1.7e-09 2.2e-06 27.8 1.9 1 23 490 512 490 512 0.98 Zinc finger, C2H2 type zf-H2C2_2 PF13465.6 26 ZNF215-202 - 517 6.2e-23 80.1 37.7 1 6 2.2e-06 0.0028 18.0 1.0 4 24 368 388 367 388 0.98 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF215-202 - 517 6.2e-23 80.1 37.7 2 6 9.2e-11 1.2e-07 31.8 0.3 2 25 394 417 393 418 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF215-202 - 517 6.2e-23 80.1 37.7 3 6 0.026 34 5.1 1.2 1 25 421 445 421 446 0.83 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF215-202 - 517 6.2e-23 80.1 37.7 4 6 0.00019 0.25 11.9 0.3 9 25 456 472 454 473 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF215-202 - 517 6.2e-23 80.1 37.7 5 6 4.5e-11 5.8e-08 32.8 0.7 2 25 477 500 476 501 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF215-202 - 517 6.2e-23 80.1 37.7 6 6 0.033 43 4.8 0.4 1 13 504 516 504 517 0.89 Zinc-finger double domain KRAB PF01352.27 42 ZNF215-202 - 517 5.5e-21 73.9 0.4 1 1 8.3e-24 1.1e-20 73.0 0.4 1 41 163 203 163 203 0.98 KRAB box zf-C2H2_4 PF13894.6 24 ZNF215-202 - 517 8.2e-10 38.7 40.4 1 6 1.6 2.1e+03 0.1 0.0 9 22 196 210 195 212 0.85 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF215-202 - 517 8.2e-10 38.7 40.4 2 6 1.3e-05 0.017 16.0 1.5 1 23 379 401 379 402 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF215-202 - 517 8.2e-10 38.7 40.4 3 6 2.3e-05 0.03 15.2 1.4 1 23 407 429 407 430 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF215-202 - 517 8.2e-10 38.7 40.4 4 6 1.5 1.9e+03 0.2 0.3 3 13 435 447 433 450 0.71 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF215-202 - 517 8.2e-10 38.7 40.4 5 6 1.4e-05 0.018 15.8 0.5 1 23 462 484 462 485 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF215-202 - 517 8.2e-10 38.7 40.4 6 6 1e-05 0.013 16.3 1.9 1 23 490 512 490 513 0.96 C2H2-type zinc finger # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF215-202.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF215-202.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF215-202.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF215-202.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF215-202.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:01:40 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- SCAN PF02023.17 90 ZNF215-203 - 181 2.1e-38 130.0 2.9 1 1 1.7e-42 3e-38 129.5 2.9 1 88 44 131 44 133 0.97 SCAN domain # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF215-203.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF215-203.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF215-203.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF215-203.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF215-203.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:01:40 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- SCAN PF02023.17 90 ZNF215-204 - 162 1.6e-38 130.4 2.9 1 1 1.2e-42 2.2e-38 129.9 2.9 1 88 44 131 44 133 0.97 SCAN domain # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF215-204.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF215-204.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF215-204.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF215-204.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF215-204.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:01:40 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- SCAN PF02023.17 90 ZNF215-205 - 304 4.8e-38 128.9 2.9 1 1 1e-41 9.4e-38 127.9 2.9 1 88 44 131 44 133 0.97 SCAN domain KRAB PF01352.27 42 ZNF215-205 - 304 2.8e-21 74.9 0.4 1 1 5.8e-25 5.2e-21 74.0 0.4 1 41 163 203 163 203 0.98 KRAB box # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF215-205.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF215-205.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF215-205.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF215-205.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF215-205.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:01:41 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF215-206.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF215-206.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF215-206.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF215-206.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF215-206.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:01:41 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- SCAN PF02023.17 90 ZNF215-207 - 304 4.8e-38 128.9 2.9 1 1 1e-41 9.4e-38 127.9 2.9 1 88 44 131 44 133 0.97 SCAN domain KRAB PF01352.27 42 ZNF215-207 - 304 2.8e-21 74.9 0.4 1 1 5.8e-25 5.2e-21 74.0 0.4 1 41 163 203 163 203 0.98 KRAB box # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF215-207.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF215-207.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF215-207.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF215-207.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF215-207.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:01:41 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- SCAN PF02023.17 90 ZNF215-208 - 181 2.1e-38 130.0 2.9 1 1 1.7e-42 3e-38 129.5 2.9 1 88 44 131 44 133 0.97 SCAN domain # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF215-208.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF215-208.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF215-208.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF215-208.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF215-208.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:01:42 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- SCAN PF02023.17 90 ZNF215-209 - 162 1.6e-38 130.4 2.9 1 1 1.2e-42 2.2e-38 129.9 2.9 1 88 44 131 44 133 0.97 SCAN domain # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF215-209.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF215-209.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF215-209.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF215-209.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF215-209.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:01:42 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-C2H2 PF00096.26 23 ZNF217-201 - 1048 1.6e-23 81.8 56.2 1 9 7.7e-05 0.11 13.0 1.7 3 23 67 88 65 88 0.94 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF217-201 - 1048 1.6e-23 81.8 56.2 2 9 1.6e-06 0.0022 18.4 0.1 1 23 128 150 128 150 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF217-201 - 1048 1.6e-23 81.8 56.2 3 9 6.1e-07 0.00084 19.7 1.0 3 23 158 178 156 178 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF217-201 - 1048 1.6e-23 81.8 56.2 4 9 0.00018 0.25 11.9 0.1 3 23 218 238 217 238 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF217-201 - 1048 1.6e-23 81.8 56.2 5 9 3.1e-05 0.043 14.3 3.3 3 23 377 397 375 397 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF217-201 - 1048 1.6e-23 81.8 56.2 6 9 6.6e-08 9.1e-05 22.7 1.1 2 23 472 493 472 493 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF217-201 - 1048 1.6e-23 81.8 56.2 7 9 0.0024 3.3 8.3 1.8 1 23 499 521 499 522 0.95 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF217-201 - 1048 1.6e-23 81.8 56.2 8 9 0.0048 6.7 7.4 0.5 2 23 711 733 710 733 0.88 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF217-201 - 1048 1.6e-23 81.8 56.2 9 9 3.5 4.8e+03 -1.6 0.0 13 20 815 822 814 822 0.87 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZNF217-201 - 1048 1.5e-17 62.8 55.3 1 8 0.0006 0.83 10.7 1.9 3 24 67 88 66 88 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF217-201 - 1048 1.5e-17 62.8 55.3 2 8 6.8e-05 0.094 13.6 0.3 1 23 128 150 128 151 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF217-201 - 1048 1.5e-17 62.8 55.3 3 8 3.6e-06 0.0049 17.6 0.6 2 23 157 178 156 179 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF217-201 - 1048 1.5e-17 62.8 55.3 4 8 0.0031 4.2 8.5 0.2 2 23 217 238 216 239 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF217-201 - 1048 1.5e-17 62.8 55.3 5 8 0.0013 1.8 9.6 3.3 2 23 376 397 375 398 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF217-201 - 1048 1.5e-17 62.8 55.3 6 8 8.2e-06 0.011 16.5 1.0 2 23 472 493 471 494 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF217-201 - 1048 1.5e-17 62.8 55.3 7 8 0.00011 0.16 12.9 2.0 1 24 499 522 499 522 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF217-201 - 1048 1.5e-17 62.8 55.3 8 8 0.0077 11 7.2 0.6 2 24 711 733 710 733 0.85 C2H2-type zinc finger zf-H2C2_2 PF13465.6 26 ZNF217-201 - 1048 1e-07 32.0 0.4 1 12 0.018 25 5.5 0.0 14 26 64 76 51 76 0.82 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF217-201 - 1048 1e-07 32.0 0.4 2 12 0.14 1.9e+02 2.7 2.1 11 24 124 137 118 138 0.90 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF217-201 - 1048 1e-07 32.0 0.4 3 12 0.0037 5.1 7.7 0.4 5 25 146 166 142 167 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF217-201 - 1048 1e-07 32.0 0.4 4 12 0.023 31 5.2 0.2 2 13 171 182 171 185 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF217-201 - 1048 1e-07 32.0 0.4 5 12 0.13 1.9e+02 2.8 0.2 2 14 231 243 230 244 0.82 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF217-201 - 1048 1e-07 32.0 0.4 6 12 0.87 1.2e+03 0.2 0.3 10 17 279 286 274 288 0.77 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF217-201 - 1048 1e-07 32.0 0.4 7 12 0.0047 6.5 7.4 0.9 11 25 371 385 369 386 0.89 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF217-201 - 1048 1e-07 32.0 0.4 8 12 1.2 1.7e+03 -0.2 0.1 2 13 390 401 389 404 0.85 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF217-201 - 1048 1e-07 32.0 0.4 9 12 0.023 32 5.2 0.2 16 25 472 481 460 482 0.84 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF217-201 - 1048 1e-07 32.0 0.4 10 12 7.5e-11 1e-07 32.0 0.4 2 24 486 508 485 510 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF217-201 - 1048 1e-07 32.0 0.4 11 12 0.092 1.3e+02 3.3 2.0 1 13 513 525 513 527 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF217-201 - 1048 1e-07 32.0 0.4 12 12 0.12 1.6e+02 2.9 0.4 15 23 710 718 702 721 0.77 Zinc-finger double domain # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF217-201.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF217-201.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF217-201.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF217-201.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF217-201.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:01:43 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-C2H2 PF00096.26 23 ZNF217-202 - 1048 1.6e-23 81.8 56.2 1 9 7.7e-05 0.11 13.0 1.7 3 23 67 88 65 88 0.94 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF217-202 - 1048 1.6e-23 81.8 56.2 2 9 1.6e-06 0.0022 18.4 0.1 1 23 128 150 128 150 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF217-202 - 1048 1.6e-23 81.8 56.2 3 9 6.1e-07 0.00084 19.7 1.0 3 23 158 178 156 178 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF217-202 - 1048 1.6e-23 81.8 56.2 4 9 0.00018 0.25 11.9 0.1 3 23 218 238 217 238 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF217-202 - 1048 1.6e-23 81.8 56.2 5 9 3.1e-05 0.043 14.3 3.3 3 23 377 397 375 397 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF217-202 - 1048 1.6e-23 81.8 56.2 6 9 6.6e-08 9.1e-05 22.7 1.1 2 23 472 493 472 493 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF217-202 - 1048 1.6e-23 81.8 56.2 7 9 0.0024 3.3 8.3 1.8 1 23 499 521 499 522 0.95 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF217-202 - 1048 1.6e-23 81.8 56.2 8 9 0.0048 6.7 7.4 0.5 2 23 711 733 710 733 0.88 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF217-202 - 1048 1.6e-23 81.8 56.2 9 9 3.5 4.8e+03 -1.6 0.0 13 20 815 822 814 822 0.87 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZNF217-202 - 1048 1.5e-17 62.8 55.3 1 8 0.0006 0.83 10.7 1.9 3 24 67 88 66 88 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF217-202 - 1048 1.5e-17 62.8 55.3 2 8 6.8e-05 0.094 13.6 0.3 1 23 128 150 128 151 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF217-202 - 1048 1.5e-17 62.8 55.3 3 8 3.6e-06 0.0049 17.6 0.6 2 23 157 178 156 179 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF217-202 - 1048 1.5e-17 62.8 55.3 4 8 0.0031 4.2 8.5 0.2 2 23 217 238 216 239 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF217-202 - 1048 1.5e-17 62.8 55.3 5 8 0.0013 1.8 9.6 3.3 2 23 376 397 375 398 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF217-202 - 1048 1.5e-17 62.8 55.3 6 8 8.2e-06 0.011 16.5 1.0 2 23 472 493 471 494 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF217-202 - 1048 1.5e-17 62.8 55.3 7 8 0.00011 0.16 12.9 2.0 1 24 499 522 499 522 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF217-202 - 1048 1.5e-17 62.8 55.3 8 8 0.0077 11 7.2 0.6 2 24 711 733 710 733 0.85 C2H2-type zinc finger zf-H2C2_2 PF13465.6 26 ZNF217-202 - 1048 1e-07 32.0 0.4 1 12 0.018 25 5.5 0.0 14 26 64 76 51 76 0.82 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF217-202 - 1048 1e-07 32.0 0.4 2 12 0.14 1.9e+02 2.7 2.1 11 24 124 137 118 138 0.90 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF217-202 - 1048 1e-07 32.0 0.4 3 12 0.0037 5.1 7.7 0.4 5 25 146 166 142 167 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF217-202 - 1048 1e-07 32.0 0.4 4 12 0.023 31 5.2 0.2 2 13 171 182 171 185 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF217-202 - 1048 1e-07 32.0 0.4 5 12 0.13 1.9e+02 2.8 0.2 2 14 231 243 230 244 0.82 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF217-202 - 1048 1e-07 32.0 0.4 6 12 0.87 1.2e+03 0.2 0.3 10 17 279 286 274 288 0.77 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF217-202 - 1048 1e-07 32.0 0.4 7 12 0.0047 6.5 7.4 0.9 11 25 371 385 369 386 0.89 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF217-202 - 1048 1e-07 32.0 0.4 8 12 1.2 1.7e+03 -0.2 0.1 2 13 390 401 389 404 0.85 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF217-202 - 1048 1e-07 32.0 0.4 9 12 0.023 32 5.2 0.2 16 25 472 481 460 482 0.84 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF217-202 - 1048 1e-07 32.0 0.4 10 12 7.5e-11 1e-07 32.0 0.4 2 24 486 508 485 510 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF217-202 - 1048 1e-07 32.0 0.4 11 12 0.092 1.3e+02 3.3 2.0 1 13 513 525 513 527 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF217-202 - 1048 1e-07 32.0 0.4 12 12 0.12 1.6e+02 2.9 0.4 15 23 710 718 702 721 0.77 Zinc-finger double domain # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF217-202.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF217-202.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF217-202.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF217-202.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF217-202.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:01:43 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF217-203.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF217-203.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF217-203.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF217-203.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF217-203.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:01:43 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF217-204.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF217-204.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF217-204.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF217-204.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF217-204.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:01:44 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF217-205.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF217-205.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF217-205.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF217-205.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF217-205.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:01:44 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZNF2-201 - 438 4.6e-71 232.3 53.9 1 9 0.023 16 6.2 0.8 10 24 181 195 181 196 0.85 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF2-201 - 438 4.6e-71 232.3 53.9 2 9 9.8e-12 6.7e-09 35.8 1.8 1 26 200 225 200 225 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF2-201 - 438 4.6e-71 232.3 53.9 3 9 2.1e-11 1.4e-08 34.7 0.3 1 24 228 251 228 252 0.97 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF2-201 - 438 4.6e-71 232.3 53.9 4 9 7.9e-11 5.4e-08 32.9 0.3 2 24 257 279 256 280 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF2-201 - 438 4.6e-71 232.3 53.9 5 9 2.9e-12 2e-09 37.4 0.5 1 25 284 308 284 309 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF2-201 - 438 4.6e-71 232.3 53.9 6 9 1e-09 7.1e-07 29.4 0.3 2 24 313 335 312 336 0.97 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF2-201 - 438 4.6e-71 232.3 53.9 7 9 8.6e-06 0.0059 17.0 0.2 1 24 340 363 340 364 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF2-201 - 438 4.6e-71 232.3 53.9 8 9 7.8e-12 5.4e-09 36.1 0.2 1 25 368 392 368 393 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF2-201 - 438 4.6e-71 232.3 53.9 9 9 1e-12 7.2e-10 38.8 0.5 2 26 397 421 396 421 0.95 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZNF2-201 - 438 2.6e-51 169.3 65.8 1 9 3.4e-08 2.4e-05 24.5 3.2 2 23 187 208 186 208 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF2-201 - 438 2.6e-51 169.3 65.8 2 9 1.4e-07 9.8e-05 22.6 2.6 1 23 214 236 214 236 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF2-201 - 438 2.6e-51 169.3 65.8 3 9 7.1e-08 4.9e-05 23.6 0.7 1 23 242 264 242 264 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF2-201 - 438 2.6e-51 169.3 65.8 4 9 4.3e-09 3e-06 27.4 1.0 1 23 270 292 270 292 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF2-201 - 438 2.6e-51 169.3 65.8 5 9 1.8e-07 0.00013 22.3 1.3 1 23 298 320 298 320 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF2-201 - 438 2.6e-51 169.3 65.8 6 9 5.5e-07 0.00038 20.8 0.2 1 23 326 348 326 348 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF2-201 - 438 2.6e-51 169.3 65.8 7 9 2.2e-08 1.5e-05 25.2 0.7 1 23 354 376 354 376 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF2-201 - 438 2.6e-51 169.3 65.8 8 9 2.2e-07 0.00015 22.0 2.8 1 23 382 404 382 404 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF2-201 - 438 2.6e-51 169.3 65.8 9 9 2.6e-07 0.00018 21.8 0.3 1 22 410 431 410 431 0.96 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZNF2-201 - 438 1.1e-32 109.9 63.1 1 9 8.4e-06 0.0058 17.4 2.2 2 23 187 208 186 209 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF2-201 - 438 1.1e-32 109.9 63.1 2 9 6.7e-05 0.046 14.6 2.0 3 23 216 236 214 237 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF2-201 - 438 1.1e-32 109.9 63.1 3 9 3e-05 0.021 15.7 0.8 1 23 242 264 242 265 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF2-201 - 438 1.1e-32 109.9 63.1 4 9 7.8e-06 0.0054 17.5 0.7 1 23 270 292 270 293 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF2-201 - 438 1.1e-32 109.9 63.1 5 9 2.5e-05 0.017 15.9 1.1 1 23 298 320 298 321 0.88 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF2-201 - 438 1.1e-32 109.9 63.1 6 9 1.6e-05 0.011 16.5 0.2 1 23 326 348 326 349 0.97 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF2-201 - 438 1.1e-32 109.9 63.1 7 9 1.2e-05 0.0084 16.9 0.6 1 23 354 376 354 377 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF2-201 - 438 1.1e-32 109.9 63.1 8 9 2e-05 0.014 16.2 2.6 1 23 382 404 382 405 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF2-201 - 438 1.1e-32 109.9 63.1 9 9 2e-06 0.0014 19.3 0.4 1 22 410 431 410 432 0.94 C2H2-type zinc finger KRAB PF01352.27 42 ZNF2-201 - 438 3.3e-21 74.7 0.3 1 1 8.7e-24 6e-21 73.8 0.3 1 42 13 54 13 54 0.99 KRAB box zf-C2H2_11 PF16622.5 29 ZNF2-201 - 438 5.9e-12 45.1 53.2 1 8 0.017 11 5.8 2.2 7 24 188 205 185 208 0.91 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF2-201 - 438 5.9e-12 45.1 53.2 2 8 9.4e-06 0.0065 16.2 2.4 7 24 216 233 213 236 0.92 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF2-201 - 438 5.9e-12 45.1 53.2 3 8 4.9e-05 0.034 13.9 0.2 5 26 270 291 267 292 0.94 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF2-201 - 438 5.9e-12 45.1 53.2 4 8 0.00065 0.44 10.3 0.8 4 26 297 319 295 320 0.87 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF2-201 - 438 5.9e-12 45.1 53.2 5 8 0.0017 1.2 9.0 0.0 6 23 327 344 325 346 0.93 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF2-201 - 438 5.9e-12 45.1 53.2 6 8 0.0038 2.6 7.9 0.6 5 26 354 375 353 376 0.91 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF2-201 - 438 5.9e-12 45.1 53.2 7 8 0.0046 3.2 7.6 1.9 6 25 383 402 381 404 0.90 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF2-201 - 438 5.9e-12 45.1 53.2 8 8 0.011 7.3 6.4 0.2 6 23 411 428 408 430 0.86 zinc-finger C2H2-type zf-C2H2_jaz PF12171.8 27 ZNF2-201 - 438 2.1e-11 43.8 35.3 1 9 0.0011 0.78 10.1 1.0 4 24 188 208 187 208 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF2-201 - 438 2.1e-11 43.8 35.3 2 9 0.019 13 6.2 0.1 2 21 214 233 213 236 0.89 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF2-201 - 438 2.1e-11 43.8 35.3 3 9 0.0014 0.95 9.8 0.1 2 22 242 262 241 262 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF2-201 - 438 2.1e-11 43.8 35.3 4 9 0.025 17 5.8 0.1 2 22 270 290 269 290 0.91 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF2-201 - 438 2.1e-11 43.8 35.3 5 9 0.3 2.1e+02 2.4 0.2 2 20 298 316 297 318 0.82 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF2-201 - 438 2.1e-11 43.8 35.3 6 9 0.014 9.3 6.7 0.1 2 22 326 346 325 346 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF2-201 - 438 2.1e-11 43.8 35.3 7 9 0.013 8.8 6.7 0.6 4 22 356 374 353 374 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF2-201 - 438 2.1e-11 43.8 35.3 8 9 0.39 2.7e+02 2.0 0.1 2 12 382 392 381 393 0.89 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF2-201 - 438 2.1e-11 43.8 35.3 9 9 6.5e-05 0.045 14.1 0.0 2 22 410 430 409 430 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_6 PF13912.6 27 ZNF2-201 - 438 3.4e-10 39.6 60.5 1 9 0.049 34 4.6 1.4 3 24 187 208 187 211 0.83 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF2-201 - 438 3.4e-10 39.6 60.5 2 9 0.038 26 5.0 1.3 2 24 214 236 214 239 0.80 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF2-201 - 438 3.4e-10 39.6 60.5 3 9 0.004 2.7 8.1 2.0 2 11 242 251 242 252 0.96 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF2-201 - 438 3.4e-10 39.6 60.5 4 9 0.014 9.4 6.4 0.4 2 11 270 279 270 288 0.95 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF2-201 - 438 3.4e-10 39.6 60.5 5 9 0.0022 1.5 8.9 0.9 2 12 298 308 298 309 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF2-201 - 438 3.4e-10 39.6 60.5 6 9 0.00037 0.25 11.4 0.7 2 24 326 348 326 350 0.91 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF2-201 - 438 3.4e-10 39.6 60.5 7 9 0.0043 3 8.0 0.4 1 11 353 363 353 376 0.88 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF2-201 - 438 3.4e-10 39.6 60.5 8 9 0.00066 0.46 10.6 0.7 2 12 382 392 382 393 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF2-201 - 438 3.4e-10 39.6 60.5 9 9 2.7e-05 0.018 15.0 0.6 2 13 410 421 410 434 0.87 C2H2-type zinc finger Zn-ribbon_8 PF09723.10 40 ZNF2-201 - 438 3.6e-07 30.2 46.9 1 9 0.0045 3.1 8.0 4.8 7 34 187 221 185 225 0.88 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF2-201 - 438 3.6e-07 30.2 46.9 2 9 0.0049 3.4 7.9 3.4 6 33 214 248 212 252 0.78 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF2-201 - 438 3.6e-07 30.2 46.9 3 9 0.0081 5.6 7.2 3.1 6 34 242 277 241 279 0.90 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF2-201 - 438 3.6e-07 30.2 46.9 4 9 0.00081 0.56 10.4 5.0 6 35 270 306 269 312 0.87 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF2-201 - 438 3.6e-07 30.2 46.9 5 9 0.00035 0.24 11.5 4.9 6 34 298 333 297 335 0.90 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF2-201 - 438 3.6e-07 30.2 46.9 6 9 0.00038 0.26 11.4 4.7 6 34 326 361 325 363 0.86 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF2-201 - 438 3.6e-07 30.2 46.9 7 9 0.00028 0.19 11.9 6.9 6 36 354 391 353 395 0.88 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF2-201 - 438 3.6e-07 30.2 46.9 8 9 0.0034 2.4 8.4 6.0 6 34 382 417 381 422 0.88 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF2-201 - 438 3.6e-07 30.2 46.9 9 9 0.024 16 5.7 0.2 6 17 410 421 408 431 0.78 Zinc ribbon domain # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF2-201.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF2-201.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF2-201.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF2-201.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF2-201.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:01:45 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZNF2-202 - 345 3.2e-72 236.0 53.9 1 9 0.019 12 6.5 0.8 10 24 88 102 88 103 0.85 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF2-202 - 345 3.2e-72 236.0 53.9 2 9 7.8e-12 5e-09 36.2 1.8 1 26 107 132 107 132 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF2-202 - 345 3.2e-72 236.0 53.9 3 9 1.7e-11 1.1e-08 35.2 0.3 1 24 135 158 135 159 0.97 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF2-202 - 345 3.2e-72 236.0 53.9 4 9 6.3e-11 4e-08 33.3 0.3 2 24 164 186 163 187 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF2-202 - 345 3.2e-72 236.0 53.9 5 9 2.3e-12 1.5e-09 37.9 0.5 1 25 191 215 191 216 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF2-202 - 345 3.2e-72 236.0 53.9 6 9 8.3e-10 5.3e-07 29.8 0.3 2 24 220 242 219 243 0.97 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF2-202 - 345 3.2e-72 236.0 53.9 7 9 6.8e-06 0.0044 17.4 0.2 1 24 247 270 247 271 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF2-202 - 345 3.2e-72 236.0 53.9 8 9 6.2e-12 4e-09 36.5 0.2 1 25 275 299 275 300 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF2-202 - 345 3.2e-72 236.0 53.9 9 9 8.3e-13 5.3e-10 39.3 0.5 2 26 304 328 303 328 0.95 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZNF2-202 - 345 2e-52 172.8 65.8 1 9 2.8e-08 1.8e-05 25.0 3.2 2 23 94 115 93 115 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF2-202 - 345 2e-52 172.8 65.8 2 9 1.1e-07 7.3e-05 23.0 2.6 1 23 121 143 121 143 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF2-202 - 345 2e-52 172.8 65.8 3 9 5.7e-08 3.7e-05 24.0 0.7 1 23 149 171 149 171 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF2-202 - 345 2e-52 172.8 65.8 4 9 3.5e-09 2.2e-06 27.8 1.0 1 23 177 199 177 199 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF2-202 - 345 2e-52 172.8 65.8 5 9 1.5e-07 9.4e-05 22.7 1.3 1 23 205 227 205 227 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF2-202 - 345 2e-52 172.8 65.8 6 9 4.4e-07 0.00028 21.2 0.2 1 23 233 255 233 255 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF2-202 - 345 2e-52 172.8 65.8 7 9 1.7e-08 1.1e-05 25.6 0.7 1 23 261 283 261 283 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF2-202 - 345 2e-52 172.8 65.8 8 9 1.8e-07 0.00011 22.4 2.8 1 23 289 311 289 311 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF2-202 - 345 2e-52 172.8 65.8 9 9 2.1e-07 0.00013 22.2 0.3 1 22 317 338 317 338 0.96 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZNF2-202 - 345 8.4e-34 113.3 63.1 1 9 6.7e-06 0.0043 17.8 2.2 2 23 94 115 93 116 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF2-202 - 345 8.4e-34 113.3 63.1 2 9 5.3e-05 0.034 15.0 2.0 3 23 123 143 121 144 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF2-202 - 345 8.4e-34 113.3 63.1 3 9 2.4e-05 0.015 16.1 0.8 1 23 149 171 149 172 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF2-202 - 345 8.4e-34 113.3 63.1 4 9 6.2e-06 0.004 17.9 0.7 1 23 177 199 177 200 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF2-202 - 345 8.4e-34 113.3 63.1 5 9 2e-05 0.013 16.3 1.1 1 23 205 227 205 228 0.88 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF2-202 - 345 8.4e-34 113.3 63.1 6 9 1.3e-05 0.0083 16.9 0.2 1 23 233 255 233 256 0.97 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF2-202 - 345 8.4e-34 113.3 63.1 7 9 9.7e-06 0.0062 17.3 0.6 1 23 261 283 261 284 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF2-202 - 345 8.4e-34 113.3 63.1 8 9 1.6e-05 0.01 16.6 2.6 1 23 289 311 289 312 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF2-202 - 345 8.4e-34 113.3 63.1 9 9 1.6e-06 0.001 19.7 0.4 1 22 317 338 317 339 0.94 C2H2-type zinc finger zf-C2H2_11 PF16622.5 29 ZNF2-202 - 345 4.8e-13 48.6 52.9 1 9 0.013 8.5 6.2 2.2 7 24 95 112 92 115 0.91 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF2-202 - 345 4.8e-13 48.6 52.9 2 9 7.6e-06 0.0049 16.6 2.4 7 24 123 140 120 143 0.92 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF2-202 - 345 4.8e-13 48.6 52.9 3 9 7.8 5e+03 -2.6 0.1 6 24 150 168 146 170 0.58 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF2-202 - 345 4.8e-13 48.6 52.9 4 9 3.9e-05 0.025 14.3 0.2 5 26 177 198 174 199 0.94 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF2-202 - 345 4.8e-13 48.6 52.9 5 9 0.00052 0.33 10.7 0.8 4 26 204 226 202 227 0.87 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF2-202 - 345 4.8e-13 48.6 52.9 6 9 0.0014 0.9 9.4 0.0 6 23 234 251 232 253 0.93 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF2-202 - 345 4.8e-13 48.6 52.9 7 9 0.0031 2 8.3 0.6 5 26 261 282 260 283 0.91 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF2-202 - 345 4.8e-13 48.6 52.9 8 9 0.0037 2.4 8.0 1.9 6 25 290 309 288 311 0.90 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF2-202 - 345 4.8e-13 48.6 52.9 9 9 0.0086 5.5 6.8 0.2 6 23 318 335 315 337 0.86 zinc-finger C2H2-type zf-C2H2_jaz PF12171.8 27 ZNF2-202 - 345 1.8e-12 47.2 35.3 1 9 0.00091 0.58 10.5 1.0 4 24 95 115 94 115 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF2-202 - 345 1.8e-12 47.2 35.3 2 9 0.015 9.9 6.6 0.1 2 21 121 140 120 143 0.89 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF2-202 - 345 1.8e-12 47.2 35.3 3 9 0.0011 0.71 10.2 0.1 2 22 149 169 148 169 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF2-202 - 345 1.8e-12 47.2 35.3 4 9 0.02 13 6.2 0.1 2 22 177 197 176 197 0.91 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF2-202 - 345 1.8e-12 47.2 35.3 5 9 0.24 1.5e+02 2.8 0.2 2 20 205 223 204 225 0.82 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF2-202 - 345 1.8e-12 47.2 35.3 6 9 0.011 7 7.1 0.1 2 22 233 253 232 253 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF2-202 - 345 1.8e-12 47.2 35.3 7 9 0.01 6.6 7.1 0.6 4 22 263 281 260 281 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF2-202 - 345 1.8e-12 47.2 35.3 8 9 0.32 2e+02 2.4 0.1 2 12 289 299 288 300 0.89 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF2-202 - 345 1.8e-12 47.2 35.3 9 9 5.3e-05 0.034 14.5 0.0 2 22 317 337 316 337 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_6 PF13912.6 27 ZNF2-202 - 345 1.5e-11 44.0 60.5 1 10 4.1 2.6e+03 -1.4 0.0 11 19 5 13 3 13 0.89 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF2-202 - 345 1.5e-11 44.0 60.5 2 10 0.039 25 5.0 1.4 3 24 94 115 94 118 0.84 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF2-202 - 345 1.5e-11 44.0 60.5 3 10 0.031 20 5.4 1.3 2 24 121 143 121 146 0.80 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF2-202 - 345 1.5e-11 44.0 60.5 4 10 0.0033 2.1 8.4 2.0 2 11 149 158 149 159 0.96 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF2-202 - 345 1.5e-11 44.0 60.5 5 10 0.011 6.8 6.8 0.3 2 11 177 186 177 196 0.95 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF2-202 - 345 1.5e-11 44.0 60.5 6 10 0.0018 1.2 9.3 0.9 2 12 205 215 205 216 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF2-202 - 345 1.5e-11 44.0 60.5 7 10 0.00029 0.19 11.8 0.7 2 24 233 255 233 257 0.91 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF2-202 - 345 1.5e-11 44.0 60.5 8 10 0.0035 2.2 8.4 0.4 1 11 260 270 260 283 0.88 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF2-202 - 345 1.5e-11 44.0 60.5 9 10 0.00055 0.35 10.9 0.7 2 12 289 299 289 300 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF2-202 - 345 1.5e-11 44.0 60.5 10 10 1.9e-05 0.012 15.5 0.6 2 13 317 328 317 342 0.84 C2H2-type zinc finger Zn-ribbon_8 PF09723.10 40 ZNF2-202 - 345 4.8e-08 33.0 46.6 1 9 0.0025 1.6 8.9 4.7 7 35 94 129 92 134 0.87 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF2-202 - 345 4.8e-08 33.0 46.6 2 9 0.0036 2.3 8.4 3.2 6 33 121 155 120 158 0.77 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF2-202 - 345 4.8e-08 33.0 46.6 3 9 0.0057 3.6 7.8 3.2 6 34 149 184 148 190 0.89 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF2-202 - 345 4.8e-08 33.0 46.6 4 9 0.00061 0.39 10.9 5.0 6 35 177 213 176 219 0.87 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF2-202 - 345 4.8e-08 33.0 46.6 5 9 0.0003 0.19 11.9 5.0 6 34 205 240 204 242 0.90 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF2-202 - 345 4.8e-08 33.0 46.6 6 9 0.0003 0.19 11.9 4.7 6 34 233 268 232 270 0.86 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF2-202 - 345 4.8e-08 33.0 46.6 7 9 0.00018 0.11 12.6 6.6 6 36 261 298 259 302 0.88 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF2-202 - 345 4.8e-08 33.0 46.6 8 9 0.0026 1.6 8.9 6.0 6 34 289 324 288 329 0.88 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF2-202 - 345 4.8e-08 33.0 46.6 9 9 0.02 13 6.0 0.2 6 17 317 328 316 338 0.77 Zinc ribbon domain zf-met PF12874.7 25 ZNF2-202 - 345 1.8e-07 31.3 47.3 1 9 0.041 26 5.4 0.8 3 21 95 113 94 116 0.89 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF2-202 - 345 1.8e-07 31.3 47.3 2 9 0.0011 0.71 10.4 1.0 1 23 121 143 121 144 0.92 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF2-202 - 345 1.8e-07 31.3 47.3 3 9 0.0041 2.7 8.5 0.5 1 21 149 169 149 172 0.89 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF2-202 - 345 1.8e-07 31.3 47.3 4 9 0.064 41 4.7 0.3 1 21 177 197 177 200 0.90 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF2-202 - 345 1.8e-07 31.3 47.3 5 9 0.43 2.8e+02 2.1 0.0 8 23 197 212 196 213 0.87 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF2-202 - 345 1.8e-07 31.3 47.3 6 9 0.0095 6.1 7.4 0.5 1 21 233 253 233 255 0.92 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF2-202 - 345 1.8e-07 31.3 47.3 7 9 0.025 16 6.1 0.8 1 21 261 281 261 284 0.91 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF2-202 - 345 1.8e-07 31.3 47.3 8 9 2.9 1.9e+03 -0.5 0.4 1 11 289 299 289 309 0.82 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF2-202 - 345 1.8e-07 31.3 47.3 9 9 5.3e-06 0.0034 17.7 0.3 1 20 317 336 317 337 0.94 Zinc-finger of C2H2 type # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF2-202.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF2-202.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF2-202.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF2-202.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF2-202.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:01:45 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZNF2-203 - 425 3.3e-71 232.8 53.9 1 9 0.024 15 6.2 0.8 10 24 168 182 168 183 0.85 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF2-203 - 425 3.3e-71 232.8 53.9 2 9 1e-11 6.5e-09 35.8 1.8 1 26 187 212 187 212 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF2-203 - 425 3.3e-71 232.8 53.9 3 9 2.1e-11 1.4e-08 34.8 0.3 1 24 215 238 215 239 0.97 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF2-203 - 425 3.3e-71 232.8 53.9 4 9 8.2e-11 5.2e-08 33.0 0.3 2 24 244 266 243 267 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF2-203 - 425 3.3e-71 232.8 53.9 5 9 3e-12 1.9e-09 37.5 0.5 1 25 271 295 271 296 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF2-203 - 425 3.3e-71 232.8 53.9 6 9 1.1e-09 6.9e-07 29.4 0.3 2 24 300 322 299 323 0.97 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF2-203 - 425 3.3e-71 232.8 53.9 7 9 8.9e-06 0.0057 17.0 0.2 1 24 327 350 327 351 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF2-203 - 425 3.3e-71 232.8 53.9 8 9 8.1e-12 5.2e-09 36.1 0.2 1 25 355 379 355 380 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF2-203 - 425 3.3e-71 232.8 53.9 9 9 1.1e-12 6.9e-10 38.9 0.5 2 26 384 408 383 408 0.95 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZNF2-203 - 425 1.9e-51 169.7 65.8 1 9 3.6e-08 2.3e-05 24.6 3.2 2 23 174 195 173 195 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF2-203 - 425 1.9e-51 169.7 65.8 2 9 1.5e-07 9.5e-05 22.6 2.6 1 23 201 223 201 223 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF2-203 - 425 1.9e-51 169.7 65.8 3 9 7.4e-08 4.7e-05 23.6 0.7 1 23 229 251 229 251 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF2-203 - 425 1.9e-51 169.7 65.8 4 9 4.5e-09 2.9e-06 27.4 1.0 1 23 257 279 257 279 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF2-203 - 425 1.9e-51 169.7 65.8 5 9 1.9e-07 0.00012 22.3 1.3 1 23 285 307 285 307 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF2-203 - 425 1.9e-51 169.7 65.8 6 9 5.7e-07 0.00036 20.8 0.2 1 23 313 335 313 335 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF2-203 - 425 1.9e-51 169.7 65.8 7 9 2.2e-08 1.4e-05 25.2 0.7 1 23 341 363 341 363 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF2-203 - 425 1.9e-51 169.7 65.8 8 9 2.3e-07 0.00015 22.0 2.8 1 23 369 391 369 391 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF2-203 - 425 1.9e-51 169.7 65.8 9 9 2.7e-07 0.00017 21.8 0.3 1 22 397 418 397 418 0.96 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZNF2-203 - 425 8.1e-33 110.3 63.1 1 9 8.7e-06 0.0056 17.4 2.2 2 23 174 195 173 196 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF2-203 - 425 8.1e-33 110.3 63.1 2 9 6.9e-05 0.044 14.6 2.0 3 23 203 223 201 224 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF2-203 - 425 8.1e-33 110.3 63.1 3 9 3.1e-05 0.02 15.7 0.8 1 23 229 251 229 252 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF2-203 - 425 8.1e-33 110.3 63.1 4 9 8.1e-06 0.0052 17.5 0.7 1 23 257 279 257 280 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF2-203 - 425 8.1e-33 110.3 63.1 5 9 2.6e-05 0.017 15.9 1.1 1 23 285 307 285 308 0.88 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF2-203 - 425 8.1e-33 110.3 63.1 6 9 1.7e-05 0.011 16.5 0.2 1 23 313 335 313 336 0.97 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF2-203 - 425 8.1e-33 110.3 63.1 7 9 1.3e-05 0.0081 16.9 0.6 1 23 341 363 341 364 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF2-203 - 425 8.1e-33 110.3 63.1 8 9 2e-05 0.013 16.3 2.6 1 23 369 391 369 392 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF2-203 - 425 8.1e-33 110.3 63.1 9 9 2.1e-06 0.0013 19.4 0.4 1 22 397 418 397 419 0.94 C2H2-type zinc finger KRAB PF01352.27 42 ZNF2-203 - 425 3.1e-21 74.7 0.3 1 1 9e-24 5.8e-21 73.9 0.3 1 42 13 54 13 54 0.99 KRAB box zf-C2H2_11 PF16622.5 29 ZNF2-203 - 425 4.4e-12 45.5 53.2 1 8 0.017 11 5.9 2.2 7 24 175 192 172 195 0.91 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF2-203 - 425 4.4e-12 45.5 53.2 2 8 9.8e-06 0.0063 16.3 2.4 7 24 203 220 200 223 0.92 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF2-203 - 425 4.4e-12 45.5 53.2 3 8 5.1e-05 0.032 14.0 0.2 5 26 257 278 254 279 0.94 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF2-203 - 425 4.4e-12 45.5 53.2 4 8 0.00067 0.43 10.4 0.8 4 26 284 306 282 307 0.87 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF2-203 - 425 4.4e-12 45.5 53.2 5 8 0.0018 1.2 9.0 0.0 6 23 314 331 312 333 0.93 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF2-203 - 425 4.4e-12 45.5 53.2 6 8 0.004 2.5 7.9 0.6 5 26 341 362 340 363 0.91 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF2-203 - 425 4.4e-12 45.5 53.2 7 8 0.0048 3.1 7.6 1.9 6 25 370 389 368 391 0.90 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF2-203 - 425 4.4e-12 45.5 53.2 8 8 0.011 7.1 6.5 0.2 6 23 398 415 395 417 0.86 zinc-finger C2H2-type zf-C2H2_jaz PF12171.8 27 ZNF2-203 - 425 1.6e-11 44.2 35.3 1 9 0.0012 0.75 10.2 1.0 4 24 175 195 174 195 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF2-203 - 425 1.6e-11 44.2 35.3 2 9 0.02 13 6.2 0.1 2 21 201 220 200 223 0.89 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF2-203 - 425 1.6e-11 44.2 35.3 3 9 0.0014 0.91 9.9 0.1 2 22 229 249 228 249 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF2-203 - 425 1.6e-11 44.2 35.3 4 9 0.026 17 5.8 0.1 2 22 257 277 256 277 0.91 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF2-203 - 425 1.6e-11 44.2 35.3 5 9 0.31 2e+02 2.4 0.2 2 20 285 303 284 305 0.82 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF2-203 - 425 1.6e-11 44.2 35.3 6 9 0.014 9 6.7 0.1 2 22 313 333 312 333 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF2-203 - 425 1.6e-11 44.2 35.3 7 9 0.013 8.5 6.8 0.6 4 22 343 361 340 361 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF2-203 - 425 1.6e-11 44.2 35.3 8 9 0.4 2.6e+02 2.1 0.1 2 12 369 379 368 380 0.89 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF2-203 - 425 1.6e-11 44.2 35.3 9 9 6.8e-05 0.043 14.1 0.0 2 22 397 417 396 417 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_6 PF13912.6 27 ZNF2-203 - 425 2.5e-10 40.1 60.5 1 9 0.051 32 4.7 1.4 3 24 174 195 174 198 0.83 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF2-203 - 425 2.5e-10 40.1 60.5 2 9 0.039 25 5.0 1.3 2 24 201 223 201 226 0.80 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF2-203 - 425 2.5e-10 40.1 60.5 3 9 0.0041 2.6 8.1 2.0 2 11 229 238 229 239 0.96 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF2-203 - 425 2.5e-10 40.1 60.5 4 9 0.014 9.1 6.4 0.4 2 11 257 266 257 275 0.95 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF2-203 - 425 2.5e-10 40.1 60.5 5 9 0.0023 1.5 8.9 0.9 2 12 285 295 285 296 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF2-203 - 425 2.5e-10 40.1 60.5 6 9 0.00038 0.24 11.4 0.7 2 24 313 335 313 337 0.91 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF2-203 - 425 2.5e-10 40.1 60.5 7 9 0.0045 2.9 8.0 0.4 1 11 340 350 340 363 0.88 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF2-203 - 425 2.5e-10 40.1 60.5 8 9 0.00069 0.44 10.6 0.7 2 12 369 379 369 380 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF2-203 - 425 2.5e-10 40.1 60.5 9 9 2.8e-05 0.018 15.1 0.6 2 13 397 408 397 421 0.87 C2H2-type zinc finger Zn-ribbon_8 PF09723.10 40 ZNF2-203 - 425 1.9e-07 31.1 46.4 1 9 0.0036 2.3 8.4 4.7 7 35 174 209 172 213 0.87 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF2-203 - 425 1.9e-07 31.1 46.4 2 9 0.0053 3.4 7.9 3.4 6 33 201 235 199 238 0.77 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF2-203 - 425 1.9e-07 31.1 46.4 3 9 0.0069 4.4 7.5 3.1 6 34 229 264 228 270 0.89 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF2-203 - 425 1.9e-07 31.1 46.4 4 9 0.00077 0.49 10.5 4.9 6 35 257 293 256 299 0.87 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF2-203 - 425 1.9e-07 31.1 46.4 5 9 0.00035 0.22 11.7 4.8 6 34 285 320 284 322 0.90 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF2-203 - 425 1.9e-07 31.1 46.4 6 9 0.00036 0.23 11.6 4.6 6 34 313 348 312 350 0.86 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF2-203 - 425 1.9e-07 31.1 46.4 7 9 0.00026 0.17 12.1 6.8 6 36 341 378 340 382 0.88 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF2-203 - 425 1.9e-07 31.1 46.4 8 9 0.005 3.2 7.9 6.2 6 34 369 404 368 406 0.88 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF2-203 - 425 1.9e-07 31.1 46.4 9 9 0.025 16 5.7 0.2 6 17 397 408 396 418 0.77 Zinc ribbon domain # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF2-203.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF2-203.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF2-203.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF2-203.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF2-203.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:01:46 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZNF2-204 - 383 1e-71 234.4 53.9 1 9 0.019 13 6.4 0.8 10 24 126 140 126 141 0.85 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF2-204 - 383 1e-71 234.4 53.9 2 9 8.3e-12 5.7e-09 36.0 1.8 1 26 145 170 145 170 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF2-204 - 383 1e-71 234.4 53.9 3 9 1.8e-11 1.2e-08 35.0 0.3 1 24 173 196 173 197 0.97 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF2-204 - 383 1e-71 234.4 53.9 4 9 6.7e-11 4.6e-08 33.1 0.3 2 24 202 224 201 225 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF2-204 - 383 1e-71 234.4 53.9 5 9 2.5e-12 1.7e-09 37.7 0.5 1 25 229 253 229 254 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF2-204 - 383 1e-71 234.4 53.9 6 9 8.8e-10 6e-07 29.6 0.3 2 24 258 280 257 281 0.97 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF2-204 - 383 1e-71 234.4 53.9 7 9 7.3e-06 0.005 17.2 0.2 1 24 285 308 285 309 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF2-204 - 383 1e-71 234.4 53.9 8 9 6.6e-12 4.5e-09 36.3 0.2 1 25 313 337 313 338 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF2-204 - 383 1e-71 234.4 53.9 9 9 8.8e-13 6.1e-10 39.1 0.5 2 26 342 366 341 366 0.95 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZNF2-204 - 383 6.4e-52 171.2 65.8 1 9 2.9e-08 2e-05 24.8 3.2 2 23 132 153 131 153 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF2-204 - 383 6.4e-52 171.2 65.8 2 9 1.2e-07 8.3e-05 22.8 2.6 1 23 159 181 159 181 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF2-204 - 383 6.4e-52 171.2 65.8 3 9 6e-08 4.2e-05 23.8 0.7 1 23 187 209 187 209 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF2-204 - 383 6.4e-52 171.2 65.8 4 9 3.7e-09 2.5e-06 27.6 1.0 1 23 215 237 215 237 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF2-204 - 383 6.4e-52 171.2 65.8 5 9 1.6e-07 0.00011 22.5 1.3 1 23 243 265 243 265 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF2-204 - 383 6.4e-52 171.2 65.8 6 9 4.6e-07 0.00032 21.0 0.2 1 23 271 293 271 293 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF2-204 - 383 6.4e-52 171.2 65.8 7 9 1.8e-08 1.3e-05 25.4 0.7 1 23 299 321 299 321 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF2-204 - 383 6.4e-52 171.2 65.8 8 9 1.9e-07 0.00013 22.2 2.8 1 23 327 349 327 349 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF2-204 - 383 6.4e-52 171.2 65.8 9 9 2.2e-07 0.00015 22.0 0.3 1 22 355 376 355 376 0.96 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZNF2-204 - 383 2.7e-33 111.7 63.1 1 9 7.1e-06 0.0049 17.6 2.2 2 23 132 153 131 154 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF2-204 - 383 2.7e-33 111.7 63.1 2 9 5.7e-05 0.039 14.8 2.0 3 23 161 181 159 182 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF2-204 - 383 2.7e-33 111.7 63.1 3 9 2.5e-05 0.017 15.9 0.8 1 23 187 209 187 210 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF2-204 - 383 2.7e-33 111.7 63.1 4 9 6.6e-06 0.0046 17.7 0.7 1 23 215 237 215 238 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF2-204 - 383 2.7e-33 111.7 63.1 5 9 2.1e-05 0.015 16.1 1.1 1 23 243 265 243 266 0.88 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF2-204 - 383 2.7e-33 111.7 63.1 6 9 1.4e-05 0.0095 16.7 0.2 1 23 271 293 271 294 0.97 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF2-204 - 383 2.7e-33 111.7 63.1 7 9 1e-05 0.0071 17.1 0.6 1 23 299 321 299 322 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF2-204 - 383 2.7e-33 111.7 63.1 8 9 1.7e-05 0.011 16.4 2.6 1 23 327 349 327 350 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF2-204 - 383 2.7e-33 111.7 63.1 9 9 1.7e-06 0.0012 19.5 0.4 1 22 355 376 355 377 0.94 C2H2-type zinc finger zf-C2H2_11 PF16622.5 29 ZNF2-204 - 383 1.7e-12 46.8 53.2 1 8 0.014 9.7 6.1 2.2 7 24 133 150 130 153 0.91 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF2-204 - 383 1.7e-12 46.8 53.2 2 8 8e-06 0.0055 16.4 2.4 7 24 161 178 158 181 0.92 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF2-204 - 383 1.7e-12 46.8 53.2 3 8 4.1e-05 0.029 14.1 0.2 5 26 215 236 212 237 0.94 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF2-204 - 383 1.7e-12 46.8 53.2 4 8 0.00055 0.38 10.6 0.8 4 26 242 264 240 265 0.87 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF2-204 - 383 1.7e-12 46.8 53.2 5 8 0.0015 1 9.2 0.0 6 23 272 289 270 291 0.93 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF2-204 - 383 1.7e-12 46.8 53.2 6 8 0.0032 2.2 8.1 0.6 5 26 299 320 298 321 0.91 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF2-204 - 383 1.7e-12 46.8 53.2 7 8 0.004 2.7 7.8 1.9 6 25 328 347 326 349 0.90 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF2-204 - 383 1.7e-12 46.8 53.2 8 8 0.0091 6.3 6.7 0.2 6 23 356 373 353 375 0.86 zinc-finger C2H2-type zf-C2H2_jaz PF12171.8 27 ZNF2-204 - 383 5.4e-12 45.7 35.3 1 9 0.00096 0.66 10.3 1.0 4 24 133 153 132 153 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF2-204 - 383 5.4e-12 45.7 35.3 2 9 0.016 11 6.4 0.1 2 21 159 178 158 181 0.89 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF2-204 - 383 5.4e-12 45.7 35.3 3 9 0.0012 0.8 10.1 0.1 2 22 187 207 186 207 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF2-204 - 383 5.4e-12 45.7 35.3 4 9 0.022 15 6.0 0.1 2 22 215 235 214 235 0.91 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF2-204 - 383 5.4e-12 45.7 35.3 5 9 0.25 1.8e+02 2.6 0.2 2 20 243 261 242 263 0.82 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF2-204 - 383 5.4e-12 45.7 35.3 6 9 0.011 7.9 6.9 0.1 2 22 271 291 270 291 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF2-204 - 383 5.4e-12 45.7 35.3 7 9 0.011 7.5 7.0 0.6 4 22 301 319 298 319 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF2-204 - 383 5.4e-12 45.7 35.3 8 9 0.33 2.3e+02 2.2 0.1 2 12 327 337 326 338 0.89 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF2-204 - 383 5.4e-12 45.7 35.3 9 9 5.5e-05 0.038 14.3 0.0 2 22 355 375 354 375 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_6 PF13912.6 27 ZNF2-204 - 383 7.2e-11 41.8 60.3 1 9 0.042 29 4.8 1.4 3 24 132 153 132 156 0.83 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF2-204 - 383 7.2e-11 41.8 60.3 2 9 0.032 22 5.2 1.3 2 24 159 181 159 184 0.80 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF2-204 - 383 7.2e-11 41.8 60.3 3 9 0.0034 2.4 8.3 2.0 2 11 187 196 187 197 0.96 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF2-204 - 383 7.2e-11 41.8 60.3 4 9 0.011 7.7 6.6 0.3 2 11 215 224 215 234 0.95 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF2-204 - 383 7.2e-11 41.8 60.3 5 9 0.0019 1.3 9.1 0.9 2 12 243 253 243 254 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF2-204 - 383 7.2e-11 41.8 60.3 6 9 0.00031 0.21 11.6 0.7 2 24 271 293 271 295 0.91 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF2-204 - 383 7.2e-11 41.8 60.3 7 9 0.0037 2.5 8.2 0.4 1 11 298 308 298 321 0.88 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF2-204 - 383 7.2e-11 41.8 60.3 8 9 0.00057 0.39 10.8 0.7 2 12 327 337 327 338 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF2-204 - 383 7.2e-11 41.8 60.3 9 9 2.3e-05 0.016 15.2 0.6 2 13 355 366 355 379 0.87 C2H2-type zinc finger Zn-ribbon_8 PF09723.10 40 ZNF2-204 - 383 1.1e-07 31.8 46.5 1 9 0.0028 2 8.6 4.7 7 35 132 167 130 171 0.87 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF2-204 - 383 1.1e-07 31.8 46.5 2 9 0.0044 3 8.0 3.6 6 33 159 193 157 199 0.79 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF2-204 - 383 1.1e-07 31.8 46.5 3 9 0.0059 4 7.6 3.2 6 34 187 222 186 228 0.89 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF2-204 - 383 1.1e-07 31.8 46.5 4 9 0.00055 0.38 10.9 4.7 6 35 215 251 214 257 0.87 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF2-204 - 383 1.1e-07 31.8 46.5 5 9 0.00027 0.19 11.9 4.8 6 34 243 278 242 280 0.90 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF2-204 - 383 1.1e-07 31.8 46.5 6 9 0.00035 0.24 11.5 4.9 6 34 271 306 270 308 0.86 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF2-204 - 383 1.1e-07 31.8 46.5 7 9 0.0002 0.14 12.3 6.7 6 36 299 336 297 340 0.88 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF2-204 - 383 1.1e-07 31.8 46.5 8 9 0.0029 2 8.6 6.1 6 34 327 362 326 367 0.88 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF2-204 - 383 1.1e-07 31.8 46.5 9 9 0.021 14 5.9 0.2 6 17 355 366 354 376 0.77 Zinc ribbon domain zf-met PF12874.7 25 ZNF2-204 - 383 7.7e-07 29.3 47.8 1 9 0.043 30 5.2 0.8 3 21 133 151 132 154 0.89 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF2-204 - 383 7.7e-07 29.3 47.8 2 9 0.0012 0.81 10.2 1.0 1 23 159 181 159 182 0.92 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF2-204 - 383 7.7e-07 29.3 47.8 3 9 0.0044 3 8.4 0.5 1 21 187 207 187 210 0.89 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF2-204 - 383 7.7e-07 29.3 47.8 4 9 0.068 47 4.6 0.3 1 21 215 235 215 238 0.90 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF2-204 - 383 7.7e-07 29.3 47.8 5 9 0.46 3.2e+02 1.9 0.0 8 23 235 250 234 251 0.87 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF2-204 - 383 7.7e-07 29.3 47.8 6 9 0.01 6.9 7.2 0.5 1 21 271 291 271 293 0.92 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF2-204 - 383 7.7e-07 29.3 47.8 7 9 0.026 18 5.9 0.8 1 21 299 319 299 322 0.91 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF2-204 - 383 7.7e-07 29.3 47.8 8 9 3.1 2.1e+03 -0.7 0.4 1 11 327 337 327 347 0.82 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF2-204 - 383 7.7e-07 29.3 47.8 9 9 5.6e-06 0.0038 17.5 0.3 1 20 355 374 355 375 0.94 Zinc-finger of C2H2 type # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF2-204.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF2-204.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF2-204.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF2-204.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF2-204.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:01:46 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZNF2-205 - 387 1.2e-71 234.2 53.9 1 9 0.02 14 6.4 0.8 10 24 130 144 130 145 0.85 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF2-205 - 387 1.2e-71 234.2 53.9 2 9 8.7e-12 5.8e-09 36.0 1.8 1 26 149 174 149 174 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF2-205 - 387 1.2e-71 234.2 53.9 3 9 1.8e-11 1.2e-08 35.0 0.3 1 24 177 200 177 201 0.97 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF2-205 - 387 1.2e-71 234.2 53.9 4 9 7e-11 4.7e-08 33.1 0.3 2 24 206 228 205 229 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF2-205 - 387 1.2e-71 234.2 53.9 5 9 2.6e-12 1.7e-09 37.7 0.5 1 25 233 257 233 258 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF2-205 - 387 1.2e-71 234.2 53.9 6 9 9.2e-10 6.1e-07 29.6 0.3 2 24 262 284 261 285 0.97 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF2-205 - 387 1.2e-71 234.2 53.9 7 9 7.6e-06 0.0051 17.2 0.2 1 24 289 312 289 313 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF2-205 - 387 1.2e-71 234.2 53.9 8 9 6.9e-12 4.6e-09 36.3 0.2 1 25 317 341 317 342 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF2-205 - 387 1.2e-71 234.2 53.9 9 9 9.3e-13 6.2e-10 39.1 0.5 2 26 346 370 345 370 0.95 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZNF2-205 - 387 6.8e-52 171.1 65.8 1 9 3.1e-08 2e-05 24.8 3.2 2 23 136 157 135 157 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF2-205 - 387 6.8e-52 171.1 65.8 2 9 1.3e-07 8.5e-05 22.8 2.6 1 23 163 185 163 185 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF2-205 - 387 6.8e-52 171.1 65.8 3 9 6.4e-08 4.2e-05 23.8 0.7 1 23 191 213 191 213 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF2-205 - 387 6.8e-52 171.1 65.8 4 9 3.9e-09 2.6e-06 27.6 1.0 1 23 219 241 219 241 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF2-205 - 387 6.8e-52 171.1 65.8 5 9 1.6e-07 0.00011 22.5 1.3 1 23 247 269 247 269 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF2-205 - 387 6.8e-52 171.1 65.8 6 9 4.9e-07 0.00032 21.0 0.2 1 23 275 297 275 297 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF2-205 - 387 6.8e-52 171.1 65.8 7 9 1.9e-08 1.3e-05 25.4 0.7 1 23 303 325 303 325 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF2-205 - 387 6.8e-52 171.1 65.8 8 9 2e-07 0.00013 22.2 2.8 1 23 331 353 331 353 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF2-205 - 387 6.8e-52 171.1 65.8 9 9 2.3e-07 0.00015 22.0 0.3 1 22 359 380 359 380 0.96 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZNF2-205 - 387 2.8e-33 111.7 63.1 1 9 7.5e-06 0.005 17.6 2.2 2 23 136 157 135 158 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF2-205 - 387 2.8e-33 111.7 63.1 2 9 5.9e-05 0.039 14.8 2.0 3 23 165 185 163 186 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF2-205 - 387 2.8e-33 111.7 63.1 3 9 2.7e-05 0.018 15.9 0.8 1 23 191 213 191 214 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF2-205 - 387 2.8e-33 111.7 63.1 4 9 7e-06 0.0046 17.7 0.7 1 23 219 241 219 242 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF2-205 - 387 2.8e-33 111.7 63.1 5 9 2.2e-05 0.015 16.1 1.1 1 23 247 269 247 270 0.88 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF2-205 - 387 2.8e-33 111.7 63.1 6 9 1.5e-05 0.0096 16.7 0.2 1 23 275 297 275 298 0.97 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF2-205 - 387 2.8e-33 111.7 63.1 7 9 1.1e-05 0.0072 17.1 0.6 1 23 303 325 303 326 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF2-205 - 387 2.8e-33 111.7 63.1 8 9 1.8e-05 0.012 16.4 2.6 1 23 331 353 331 354 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF2-205 - 387 2.8e-33 111.7 63.1 9 9 1.8e-06 0.0012 19.5 0.4 1 22 359 380 359 381 0.94 C2H2-type zinc finger KRAB PF01352.27 42 ZNF2-205 - 387 2.8e-21 74.9 0.3 1 1 7.6e-24 5.1e-21 74.1 0.3 1 42 13 54 13 54 0.99 KRAB box zf-C2H2_11 PF16622.5 29 ZNF2-205 - 387 1.7e-12 46.9 53.2 1 8 0.015 9.8 6.0 2.2 7 24 137 154 134 157 0.91 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF2-205 - 387 1.7e-12 46.9 53.2 2 8 8.4e-06 0.0056 16.4 2.4 7 24 165 182 162 185 0.92 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF2-205 - 387 1.7e-12 46.9 53.2 3 8 4.4e-05 0.029 14.1 0.2 5 26 219 240 216 241 0.94 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF2-205 - 387 1.7e-12 46.9 53.2 4 8 0.00058 0.38 10.5 0.8 4 26 246 268 244 269 0.87 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF2-205 - 387 1.7e-12 46.9 53.2 5 8 0.0016 1 9.2 0.0 6 23 276 293 274 295 0.93 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF2-205 - 387 1.7e-12 46.9 53.2 6 8 0.0034 2.3 8.1 0.6 5 26 303 324 302 325 0.91 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF2-205 - 387 1.7e-12 46.9 53.2 7 8 0.0042 2.8 7.8 1.9 6 25 332 351 330 353 0.90 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF2-205 - 387 1.7e-12 46.9 53.2 8 8 0.0095 6.3 6.6 0.2 6 23 360 377 357 379 0.86 zinc-finger C2H2-type zf-C2H2_jaz PF12171.8 27 ZNF2-205 - 387 5.9e-12 45.5 35.3 1 9 0.001 0.67 10.3 1.0 4 24 137 157 136 157 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF2-205 - 387 5.9e-12 45.5 35.3 2 9 0.017 11 6.4 0.1 2 21 163 182 162 185 0.89 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF2-205 - 387 5.9e-12 45.5 35.3 3 9 0.0012 0.81 10.0 0.1 2 22 191 211 190 211 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF2-205 - 387 5.9e-12 45.5 35.3 4 9 0.023 15 6.0 0.1 2 22 219 239 218 239 0.91 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF2-205 - 387 5.9e-12 45.5 35.3 5 9 0.27 1.8e+02 2.6 0.2 2 20 247 265 246 267 0.82 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF2-205 - 387 5.9e-12 45.5 35.3 6 9 0.012 8 6.9 0.1 2 22 275 295 274 295 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF2-205 - 387 5.9e-12 45.5 35.3 7 9 0.011 7.6 7.0 0.6 4 22 305 323 302 323 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF2-205 - 387 5.9e-12 45.5 35.3 8 9 0.35 2.3e+02 2.2 0.1 2 12 331 341 330 342 0.89 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF2-205 - 387 5.9e-12 45.5 35.3 9 9 5.8e-05 0.039 14.3 0.0 2 22 359 379 358 379 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_6 PF13912.6 27 ZNF2-205 - 387 5.9e-11 42.1 60.7 1 10 4.5 3e+03 -1.6 0.0 11 19 47 55 45 55 0.89 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF2-205 - 387 5.9e-11 42.1 60.7 2 10 0.044 29 4.8 1.4 3 24 136 157 136 160 0.83 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF2-205 - 387 5.9e-11 42.1 60.7 3 10 0.034 22 5.2 1.3 2 24 163 185 163 188 0.80 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF2-205 - 387 5.9e-11 42.1 60.7 4 10 0.0036 2.4 8.3 2.0 2 11 191 200 191 201 0.96 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF2-205 - 387 5.9e-11 42.1 60.7 5 10 0.012 8.2 6.6 0.4 2 11 219 228 219 237 0.95 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF2-205 - 387 5.9e-11 42.1 60.7 6 10 0.002 1.3 9.1 0.9 2 12 247 257 247 258 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF2-205 - 387 5.9e-11 42.1 60.7 7 10 0.00033 0.22 11.6 0.7 2 24 275 297 275 299 0.91 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF2-205 - 387 5.9e-11 42.1 60.7 8 10 0.0039 2.6 8.2 0.4 1 11 302 312 302 325 0.88 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF2-205 - 387 5.9e-11 42.1 60.7 9 10 0.0006 0.4 10.7 0.7 2 12 331 341 331 342 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF2-205 - 387 5.9e-11 42.1 60.7 10 10 2.4e-05 0.016 15.2 0.6 2 13 359 370 359 383 0.87 C2H2-type zinc finger Zn-ribbon_8 PF09723.10 40 ZNF2-205 - 387 1.7e-07 31.2 47.3 1 9 0.0031 2.1 8.5 4.7 7 35 136 171 134 175 0.87 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF2-205 - 387 1.7e-07 31.2 47.3 2 9 0.0038 2.5 8.3 3.2 6 33 163 197 162 200 0.77 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF2-205 - 387 1.7e-07 31.2 47.3 3 9 0.0061 4 7.6 3.2 6 34 191 226 190 232 0.89 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF2-205 - 387 1.7e-07 31.2 47.3 4 9 0.00072 0.48 10.6 5.0 6 35 219 255 218 261 0.87 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF2-205 - 387 1.7e-07 31.2 47.3 5 9 0.00038 0.26 11.5 5.3 6 34 247 282 246 285 0.90 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF2-205 - 387 1.7e-07 31.2 47.3 6 9 0.00042 0.28 11.3 5.0 6 34 275 310 274 312 0.86 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF2-205 - 387 1.7e-07 31.2 47.3 7 9 0.00031 0.2 11.8 7.2 6 36 303 340 302 344 0.88 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF2-205 - 387 1.7e-07 31.2 47.3 8 9 0.0044 2.9 8.1 6.2 6 34 331 366 330 368 0.88 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF2-205 - 387 1.7e-07 31.2 47.3 9 9 0.022 14 5.9 0.2 6 17 359 370 357 380 0.78 Zinc ribbon domain zf-met PF12874.7 25 ZNF2-205 - 387 7.7e-07 29.3 47.8 1 9 0.045 30 5.2 0.8 3 21 137 155 136 158 0.89 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF2-205 - 387 7.7e-07 29.3 47.8 2 9 0.0012 0.82 10.2 1.0 1 23 163 185 163 186 0.92 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF2-205 - 387 7.7e-07 29.3 47.8 3 9 0.0046 3.1 8.3 0.5 1 21 191 211 191 214 0.89 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF2-205 - 387 7.7e-07 29.3 47.8 4 9 0.072 48 4.5 0.3 1 21 219 239 219 242 0.90 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF2-205 - 387 7.7e-07 29.3 47.8 5 9 0.48 3.2e+02 1.9 0.0 8 23 239 254 238 255 0.87 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF2-205 - 387 7.7e-07 29.3 47.8 6 9 0.011 7 7.2 0.5 1 21 275 295 275 297 0.92 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF2-205 - 387 7.7e-07 29.3 47.8 7 9 0.027 18 5.9 0.8 1 21 303 323 303 326 0.91 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF2-205 - 387 7.7e-07 29.3 47.8 8 9 3.2 2.1e+03 -0.7 0.4 1 11 331 341 331 351 0.82 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF2-205 - 387 7.7e-07 29.3 47.8 9 9 5.9e-06 0.0039 17.5 0.3 1 20 359 378 359 379 0.94 Zinc-finger of C2H2 type # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF2-205.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF2-205.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF2-205.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF2-205.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF2-205.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:01:47 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZNF22-201 - 224 7.9e-37 124.1 43.0 1 6 0.00012 0.086 13.3 1.0 12 25 52 65 50 66 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF22-201 - 224 7.9e-37 124.1 43.0 2 6 1.4e-07 9.7e-05 22.6 2.5 4 24 72 92 70 94 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF22-201 - 224 7.9e-37 124.1 43.0 3 6 9.3e-12 6.4e-09 35.8 0.3 1 26 97 122 97 122 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF22-201 - 224 7.9e-37 124.1 43.0 4 6 3.5e-11 2.4e-08 34.0 0.3 1 25 125 149 125 150 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF22-201 - 224 7.9e-37 124.1 43.0 5 6 2.1e-11 1.4e-08 34.7 2.7 1 25 153 177 153 178 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF22-201 - 224 7.9e-37 124.1 43.0 6 6 0.0029 2 9.0 2.9 1 14 181 194 181 196 0.93 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZNF22-201 - 224 3.4e-35 118.6 43.5 1 5 1.8e-08 1.2e-05 25.4 2.1 1 23 55 77 55 77 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF22-201 - 224 3.4e-35 118.6 43.5 2 5 8.6e-09 5.9e-06 26.4 1.9 1 23 83 105 83 105 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF22-201 - 224 3.4e-35 118.6 43.5 3 5 2.2e-10 1.5e-07 31.4 0.4 1 23 111 133 111 133 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF22-201 - 224 3.4e-35 118.6 43.5 4 5 1.4e-09 9.8e-07 28.9 4.6 1 23 139 161 139 161 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF22-201 - 224 3.4e-35 118.6 43.5 5 5 1.4e-09 9.7e-07 28.9 5.6 1 23 167 189 167 189 0.99 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZNF22-201 - 224 6.7e-20 70.1 41.9 1 5 2.8e-06 0.0019 18.9 2.0 1 23 55 77 55 78 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF22-201 - 224 6.7e-20 70.1 41.9 2 5 6.9e-05 0.048 14.5 1.4 1 23 83 105 83 106 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF22-201 - 224 6.7e-20 70.1 41.9 3 5 1.7e-06 0.0012 19.5 0.4 1 23 111 133 111 134 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF22-201 - 224 6.7e-20 70.1 41.9 4 5 3.3e-06 0.0023 18.6 3.8 1 23 139 161 139 162 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF22-201 - 224 6.7e-20 70.1 41.9 5 5 7.7e-07 0.00053 20.6 5.8 1 23 167 189 167 190 0.95 C2H2-type zinc finger zf-C2H2_11 PF16622.5 29 ZNF22-201 - 224 1.4e-08 34.4 34.0 1 5 0.017 11 5.8 0.2 5 26 55 76 51 77 0.85 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF22-201 - 224 1.4e-08 34.4 34.0 2 5 0.0029 2 8.3 2.1 4 26 82 104 80 105 0.91 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF22-201 - 224 1.4e-08 34.4 34.0 3 5 0.047 32 4.4 0.1 5 26 111 132 108 133 0.81 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF22-201 - 224 1.4e-08 34.4 34.0 4 5 1.5e-05 0.011 15.5 2.1 5 23 139 157 136 160 0.84 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF22-201 - 224 1.4e-08 34.4 34.0 5 5 2.1e-06 0.0014 18.3 5.0 5 29 167 190 164 190 0.91 zinc-finger C2H2-type # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF22-201.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF22-201.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF22-201.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF22-201.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF22-201.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:01:47 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZNF222-201 - 451 1.5e-53 176.9 93.3 1 12 0.012 19 5.9 0.2 8 24 110 126 108 128 0.88 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF222-201 - 451 1.5e-53 176.9 93.3 2 12 0.0002 0.33 11.4 0.4 11 24 141 154 140 154 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF222-201 - 451 1.5e-53 176.9 93.3 3 12 1.1e-06 0.0019 18.6 1.4 5 25 163 183 159 184 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF222-201 - 451 1.5e-53 176.9 93.3 4 12 8.4e-11 1.4e-07 31.6 2.4 2 25 188 211 187 212 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF222-201 - 451 1.5e-53 176.9 93.3 5 12 3.4e-08 5.5e-05 23.4 4.7 1 24 215 238 215 240 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF222-201 - 451 1.5e-53 176.9 93.3 6 12 2.6e-10 4.2e-07 30.1 2.1 2 24 244 266 243 266 0.97 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF222-201 - 451 1.5e-53 176.9 93.3 7 12 0.0005 0.82 10.2 0.1 1 22 271 292 271 295 0.83 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF222-201 - 451 1.5e-53 176.9 93.3 8 12 9.8e-09 1.6e-05 25.1 2.0 3 25 301 323 299 323 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF222-201 - 451 1.5e-53 176.9 93.3 9 12 1.5e-10 2.4e-07 30.8 0.3 4 24 330 350 327 352 0.89 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF222-201 - 451 1.5e-53 176.9 93.3 10 12 2.1e-08 3.3e-05 24.1 2.6 2 26 356 380 355 380 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF222-201 - 451 1.5e-53 176.9 93.3 11 12 0.0078 13 6.4 4.4 5 23 387 405 385 408 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF222-201 - 451 1.5e-53 176.9 93.3 12 12 2.3e-05 0.037 14.5 0.4 7 26 417 436 416 436 0.93 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZNF222-201 - 451 1.5e-29 100.8 98.7 1 11 1.4e-06 0.0023 18.3 4.4 1 23 145 167 145 167 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF222-201 - 451 1.5e-29 100.8 98.7 2 11 6.6e-09 1.1e-05 25.6 0.9 1 23 173 195 173 195 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF222-201 - 451 1.5e-29 100.8 98.7 3 11 0.001 1.7 9.3 5.0 1 23 201 223 201 223 0.93 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF222-201 - 451 1.5e-29 100.8 98.7 4 11 1.4e-06 0.0023 18.3 4.7 1 23 229 251 229 251 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF222-201 - 451 1.5e-29 100.8 98.7 5 11 7.8e-06 0.013 15.9 5.0 1 23 257 279 257 279 0.92 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF222-201 - 451 1.5e-29 100.8 98.7 6 11 0.1 1.6e+02 3.0 0.1 7 23 291 307 291 307 0.91 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF222-201 - 451 1.5e-29 100.8 98.7 7 11 1e-07 0.00017 21.9 0.8 1 23 313 335 313 335 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF222-201 - 451 1.5e-29 100.8 98.7 8 11 4.6e-05 0.075 13.5 1.4 1 23 341 363 341 363 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF222-201 - 451 1.5e-29 100.8 98.7 9 11 2.1e-06 0.0035 17.7 2.2 1 23 369 391 369 391 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF222-201 - 451 1.5e-29 100.8 98.7 10 11 0.43 7e+02 1.0 3.3 2 9 398 405 397 413 0.86 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF222-201 - 451 1.5e-29 100.8 98.7 11 11 0.0004 0.65 10.6 0.3 2 16 426 440 425 441 0.90 Zinc finger, C2H2 type KRAB PF01352.27 42 ZNF222-201 - 451 2.4e-23 81.5 0.0 1 1 2.9e-26 4.8e-23 80.5 0.0 2 42 8 48 7 48 0.98 KRAB box zf-C2H2_4 PF13894.6 24 ZNF222-201 - 451 1e-19 69.5 91.2 1 11 0.00029 0.47 11.4 3.7 1 23 145 167 145 168 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF222-201 - 451 1e-19 69.5 91.2 2 11 5.2e-07 0.00085 20.0 0.9 1 23 173 195 173 196 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF222-201 - 451 1e-19 69.5 91.2 3 11 3.3e-06 0.0054 17.5 5.1 1 23 201 223 201 224 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF222-201 - 451 1e-19 69.5 91.2 4 11 0.00073 1.2 10.2 3.4 1 23 229 251 229 252 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF222-201 - 451 1e-19 69.5 91.2 5 11 1.7e-05 0.027 15.3 5.0 1 23 257 279 257 280 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF222-201 - 451 1e-19 69.5 91.2 6 11 2.2 3.6e+03 -0.6 0.1 8 23 292 307 291 308 0.82 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF222-201 - 451 1e-19 69.5 91.2 7 11 0.00017 0.27 12.2 1.1 1 23 313 335 313 336 0.83 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF222-201 - 451 1e-19 69.5 91.2 8 11 1.4e-05 0.023 15.5 0.9 1 23 341 363 341 364 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF222-201 - 451 1e-19 69.5 91.2 9 11 0.00028 0.46 11.5 1.4 1 23 369 391 369 391 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF222-201 - 451 1e-19 69.5 91.2 10 11 0.24 3.9e+02 2.3 1.8 2 14 398 410 397 419 0.85 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF222-201 - 451 1e-19 69.5 91.2 11 11 0.024 38 5.5 0.1 2 14 426 438 425 441 0.84 C2H2-type zinc finger # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF222-201.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF222-201.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF222-201.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF222-201.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF222-201.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:01:47 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZNF222-202 - 491 5e-53 175.3 93.3 1 12 0.012 21 5.8 0.2 8 24 150 166 148 168 0.88 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF222-202 - 491 5e-53 175.3 93.3 2 12 0.00021 0.37 11.3 0.4 11 24 181 194 180 194 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF222-202 - 491 5e-53 175.3 93.3 3 12 1.2e-06 0.0021 18.4 1.4 5 25 203 223 199 224 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF222-202 - 491 5e-53 175.3 93.3 4 12 8.4e-11 1.5e-07 31.5 2.4 2 25 228 251 227 252 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF222-202 - 491 5e-53 175.3 93.3 5 12 3.4e-08 6.1e-05 23.3 4.7 1 24 255 278 255 280 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF222-202 - 491 5e-53 175.3 93.3 6 12 2.6e-10 4.6e-07 30.0 2.1 2 24 284 306 283 306 0.97 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF222-202 - 491 5e-53 175.3 93.3 7 12 0.00051 0.91 10.1 0.1 1 22 311 332 311 335 0.83 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF222-202 - 491 5e-53 175.3 93.3 8 12 9.8e-09 1.8e-05 25.0 2.0 3 25 341 363 339 363 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF222-202 - 491 5e-53 175.3 93.3 9 12 1.5e-10 2.7e-07 30.7 0.3 4 24 370 390 367 392 0.89 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF222-202 - 491 5e-53 175.3 93.3 10 12 2.1e-08 3.7e-05 23.9 2.6 2 26 396 420 395 420 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF222-202 - 491 5e-53 175.3 93.3 11 12 0.0078 14 6.3 4.4 5 23 427 445 425 448 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF222-202 - 491 5e-53 175.3 93.3 12 12 2.3e-05 0.041 14.3 0.4 7 26 457 476 456 476 0.93 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZNF222-202 - 491 4.6e-29 99.2 98.7 1 11 1.4e-06 0.0025 18.1 4.4 1 23 185 207 185 207 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF222-202 - 491 4.6e-29 99.2 98.7 2 11 6.7e-09 1.2e-05 25.5 0.9 1 23 213 235 213 235 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF222-202 - 491 4.6e-29 99.2 98.7 3 11 0.001 1.8 9.1 5.0 1 23 241 263 241 263 0.93 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF222-202 - 491 4.6e-29 99.2 98.7 4 11 1.4e-06 0.0025 18.1 4.7 1 23 269 291 269 291 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF222-202 - 491 4.6e-29 99.2 98.7 5 11 7.9e-06 0.014 15.8 5.0 1 23 297 319 297 319 0.92 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF222-202 - 491 4.6e-29 99.2 98.7 6 11 0.1 1.8e+02 2.9 0.1 7 23 331 347 331 347 0.91 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF222-202 - 491 4.6e-29 99.2 98.7 7 11 1.1e-07 0.00019 21.7 0.8 1 23 353 375 353 375 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF222-202 - 491 4.6e-29 99.2 98.7 8 11 4.6e-05 0.083 13.4 1.4 1 23 381 403 381 403 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF222-202 - 491 4.6e-29 99.2 98.7 9 11 2.2e-06 0.0039 17.6 2.2 1 23 409 431 409 431 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF222-202 - 491 4.6e-29 99.2 98.7 10 11 0.43 7.7e+02 0.9 3.3 2 9 438 445 437 453 0.86 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF222-202 - 491 4.6e-29 99.2 98.7 11 11 0.0004 0.71 10.4 0.3 2 16 466 480 465 481 0.90 Zinc finger, C2H2 type KRAB PF01352.27 42 ZNF222-202 - 491 2.5e-23 81.5 0.0 1 1 3e-26 5.3e-23 80.4 0.0 2 42 17 57 16 57 0.98 KRAB box zf-C2H2_4 PF13894.6 24 ZNF222-202 - 491 3.1e-19 68.0 91.2 1 11 0.00029 0.52 11.3 3.7 1 23 185 207 185 208 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF222-202 - 491 3.1e-19 68.0 91.2 2 11 5.2e-07 0.00094 19.8 0.9 1 23 213 235 213 236 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF222-202 - 491 3.1e-19 68.0 91.2 3 11 3.4e-06 0.006 17.3 5.1 1 23 241 263 241 264 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF222-202 - 491 3.1e-19 68.0 91.2 4 11 0.00074 1.3 10.0 3.4 1 23 269 291 269 292 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF222-202 - 491 3.1e-19 68.0 91.2 5 11 1.7e-05 0.03 15.1 5.0 1 23 297 319 297 320 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF222-202 - 491 3.1e-19 68.0 91.2 6 11 2.2 3.9e+03 -0.8 0.1 8 23 332 347 331 348 0.82 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF222-202 - 491 3.1e-19 68.0 91.2 7 11 0.00017 0.3 12.0 1.1 1 23 353 375 353 376 0.83 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF222-202 - 491 3.1e-19 68.0 91.2 8 11 1.4e-05 0.025 15.4 0.9 1 23 381 403 381 404 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF222-202 - 491 3.1e-19 68.0 91.2 9 11 0.00029 0.51 11.3 1.4 1 23 409 431 409 431 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF222-202 - 491 3.1e-19 68.0 91.2 10 11 0.24 4.3e+02 2.2 1.8 2 14 438 450 437 459 0.85 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF222-202 - 491 3.1e-19 68.0 91.2 11 11 0.024 42 5.3 0.1 2 14 466 478 465 481 0.84 C2H2-type zinc finger # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF222-202.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF222-202.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF222-202.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF222-202.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF222-202.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:01:48 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- KRAB PF01352.27 42 ZNF222-203 - 90 1.6e-24 85.3 0.4 1 2 1.6e-28 2.9e-24 84.4 0.0 2 42 17 57 16 57 0.98 KRAB box KRAB PF01352.27 42 ZNF222-203 - 90 1.6e-24 85.3 0.4 2 2 0.14 2.5e+03 -1.8 0.1 10 24 67 83 65 84 0.55 KRAB box # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF222-203.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF222-203.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF222-203.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF222-203.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF222-203.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:01:48 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF222-204.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF222-204.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF222-204.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF222-204.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF222-204.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:01:49 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZNF223-201 - 482 1.7e-58 192.6 82.4 1 12 0.00062 0.7 10.4 0.1 8 25 141 158 138 159 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF223-201 - 482 1.7e-58 192.6 82.4 2 12 0.0095 11 6.7 0.3 12 24 173 185 171 185 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF223-201 - 482 1.7e-58 192.6 82.4 3 12 1.9e-08 2.1e-05 24.7 0.3 5 25 194 214 190 215 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF223-201 - 482 1.7e-58 192.6 82.4 4 12 8.5e-10 9.5e-07 29.0 3.3 1 24 218 241 218 243 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF223-201 - 482 1.7e-58 192.6 82.4 5 12 9.1e-08 0.0001 22.6 2.4 1 26 246 271 246 271 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF223-201 - 482 1.7e-58 192.6 82.4 6 12 3.2e-10 3.6e-07 30.3 0.5 2 24 275 297 274 298 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF223-201 - 482 1.7e-58 192.6 82.4 7 12 0.00064 0.72 10.4 0.1 1 14 302 315 302 316 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF223-201 - 482 1.7e-58 192.6 82.4 8 12 5.1e-09 5.7e-06 26.5 3.0 4 25 333 354 330 355 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF223-201 - 482 1.7e-58 192.6 82.4 9 12 7.5e-11 8.4e-08 32.3 0.6 5 25 362 382 358 383 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF223-201 - 482 1.7e-58 192.6 82.4 10 12 2.4e-08 2.6e-05 24.4 0.3 2 25 387 410 386 411 0.89 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF223-201 - 482 1.7e-58 192.6 82.4 11 12 0.00045 0.5 10.9 4.4 5 23 418 436 416 439 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF223-201 - 482 1.7e-58 192.6 82.4 12 12 5.8e-05 0.066 13.7 0.8 7 26 448 467 447 467 0.93 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZNF223-201 - 482 1.5e-35 119.6 90.7 1 12 0.087 97 3.7 0.6 3 12 150 159 149 161 0.87 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF223-201 - 482 1.5e-35 119.6 90.7 2 12 4.5e-06 0.005 17.2 4.3 1 23 176 198 176 198 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF223-201 - 482 1.5e-35 119.6 90.7 3 12 4.5e-08 5e-05 23.5 1.8 1 23 204 226 204 226 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF223-201 - 482 1.5e-35 119.6 90.7 4 12 0.0026 2.9 8.5 4.6 1 23 232 254 232 254 0.93 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF223-201 - 482 1.5e-35 119.6 90.7 5 12 2.6e-06 0.0029 18.0 0.8 1 23 260 282 260 282 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF223-201 - 482 1.5e-35 119.6 90.7 6 12 0.00011 0.13 12.8 2.2 1 19 288 306 288 310 0.94 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF223-201 - 482 1.5e-35 119.6 90.7 7 12 0.051 58 4.4 0.0 7 23 322 338 322 338 0.93 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF223-201 - 482 1.5e-35 119.6 90.7 8 12 2.9e-09 3.3e-06 27.2 1.4 1 23 344 366 344 366 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF223-201 - 482 1.5e-35 119.6 90.7 9 12 1.1e-06 0.0012 19.2 1.6 1 23 372 394 372 394 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF223-201 - 482 1.5e-35 119.6 90.7 10 12 1.2e-07 0.00013 22.2 0.6 1 23 400 422 400 422 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF223-201 - 482 1.5e-35 119.6 90.7 11 12 0.0066 7.4 7.2 0.6 1 14 428 441 428 450 0.79 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF223-201 - 482 1.5e-35 119.6 90.7 12 12 0.00062 0.7 10.5 0.3 2 16 457 471 456 472 0.90 Zinc finger, C2H2 type KRAB PF01352.27 42 ZNF223-201 - 482 2.1e-22 78.5 0.2 1 1 3.5e-25 3.9e-22 77.6 0.2 2 42 8 48 7 48 0.98 KRAB box zf-C2H2_4 PF13894.6 24 ZNF223-201 - 482 5.1e-21 73.6 84.6 1 12 0.36 4e+02 2.3 0.4 3 13 150 160 148 163 0.86 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF223-201 - 482 5.1e-21 73.6 84.6 2 12 0.00066 0.74 10.8 3.7 1 23 176 198 176 199 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF223-201 - 482 5.1e-21 73.6 84.6 3 12 3.8e-06 0.0042 17.8 1.9 1 23 204 226 204 227 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF223-201 - 482 5.1e-21 73.6 84.6 4 12 1.1e-05 0.012 16.4 4.5 1 23 232 254 232 255 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF223-201 - 482 5.1e-21 73.6 84.6 5 12 0.0014 1.6 9.8 0.6 1 23 260 282 260 283 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF223-201 - 482 5.1e-21 73.6 84.6 6 12 8.4e-05 0.095 13.6 2.7 1 23 288 310 288 311 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF223-201 - 482 5.1e-21 73.6 84.6 7 12 4.4 5e+03 -1.1 0.0 8 23 323 338 322 339 0.80 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF223-201 - 482 5.1e-21 73.6 84.6 8 12 1.9e-05 0.022 15.6 1.1 1 23 344 366 344 367 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF223-201 - 482 5.1e-21 73.6 84.6 9 12 3.1e-05 0.035 14.9 0.9 1 23 372 394 372 395 0.91 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF223-201 - 482 5.1e-21 73.6 84.6 10 12 4.4e-05 0.049 14.5 0.4 1 23 400 422 400 422 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF223-201 - 482 5.1e-21 73.6 84.6 11 12 0.15 1.7e+02 3.5 0.3 1 10 428 437 428 445 0.81 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF223-201 - 482 5.1e-21 73.6 84.6 12 12 0.037 41 5.4 0.1 2 14 457 469 456 472 0.84 C2H2-type zinc finger Zn-ribbon_8 PF09723.10 40 ZNF223-201 - 482 9.7e-07 28.8 52.0 1 7 0.037 41 4.4 2.7 8 34 150 183 149 186 0.70 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF223-201 - 482 9.7e-07 28.8 52.0 2 7 0.0027 3 8.0 5.8 6 34 204 239 203 244 0.87 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF223-201 - 482 9.7e-07 28.8 52.0 3 7 0.04 44 4.3 1.7 6 16 232 242 231 252 0.78 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF223-201 - 482 9.7e-07 28.8 52.0 4 7 0.002 2.2 8.5 1.2 6 33 260 294 259 301 0.85 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF223-201 - 482 9.7e-07 28.8 52.0 5 7 1.6e-05 0.018 15.2 1.3 6 34 344 379 342 384 0.91 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF223-201 - 482 9.7e-07 28.8 52.0 6 7 0.0031 3.4 7.8 0.3 6 26 400 420 399 425 0.75 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF223-201 - 482 9.7e-07 28.8 52.0 7 7 0.00073 0.82 9.8 4.4 6 39 428 468 427 469 0.81 Zinc ribbon domain # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF223-201.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF223-201.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF223-201.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF223-201.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF223-201.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:01:49 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- KRAB PF01352.27 42 ZNF223-202 - 89 2.1e-23 81.7 0.2 1 2 2.4e-27 2.1e-23 81.7 0.2 2 42 8 48 7 48 0.98 KRAB box KRAB PF01352.27 42 ZNF223-202 - 89 2.1e-23 81.7 0.2 2 2 1 9e+03 -3.6 0.1 10 15 58 63 56 65 0.76 KRAB box # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF223-202.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF223-202.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF223-202.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF223-202.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF223-202.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:01:49 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF223-203.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF223-203.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF223-203.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF223-203.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF223-203.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:01:50 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF223-204.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF223-204.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF223-204.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF223-204.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF223-204.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:01:50 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- KRAB PF01352.27 42 ZNF223-205 - 92 2.3e-23 81.6 0.2 1 2 2.6e-27 2.3e-23 81.6 0.2 2 42 8 48 7 48 0.98 KRAB box KRAB PF01352.27 42 ZNF223-205 - 92 2.3e-23 81.6 0.2 2 2 1.1 9.4e+03 -3.6 0.1 10 15 58 63 56 65 0.76 KRAB box # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF223-205.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF223-205.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF223-205.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF223-205.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF223-205.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:01:50 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZNF224-201 - 707 4.2e-125 403.2 153.3 1 20 4.8e-06 0.0061 16.9 2.9 3 24 164 185 162 185 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF224-201 - 707 4.2e-125 403.2 153.3 2 20 2.3e-08 2.9e-05 24.3 0.5 1 25 190 214 190 215 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF224-201 - 707 4.2e-125 403.2 153.3 3 20 1e-10 1.3e-07 31.7 1.4 1 25 218 242 218 243 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF224-201 - 707 4.2e-125 403.2 153.3 4 20 3.5e-10 4.5e-07 30.0 1.6 1 26 246 271 246 271 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF224-201 - 707 4.2e-125 403.2 153.3 5 20 7.8e-11 9.9e-08 32.1 0.3 2 24 275 297 274 297 0.97 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF224-201 - 707 4.2e-125 403.2 153.3 6 20 1.5e-09 1.9e-06 28.0 0.7 2 25 303 326 302 327 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF224-201 - 707 4.2e-125 403.2 153.3 7 20 3e-10 3.8e-07 30.2 0.7 1 24 330 353 330 355 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF224-201 - 707 4.2e-125 403.2 153.3 8 20 1.6e-08 2.1e-05 24.7 2.4 2 24 359 381 358 382 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF224-201 - 707 4.2e-125 403.2 153.3 9 20 8e-10 1e-06 28.9 1.1 2 24 387 409 387 411 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF224-201 - 707 4.2e-125 403.2 153.3 10 20 8.8e-08 0.00011 22.4 4.2 4 26 417 439 415 439 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF224-201 - 707 4.2e-125 403.2 153.3 11 20 2.5e-10 3.2e-07 30.5 0.5 2 25 443 466 442 467 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF224-201 - 707 4.2e-125 403.2 153.3 12 20 2.6e-10 3.3e-07 30.4 0.7 2 25 471 494 471 495 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF224-201 - 707 4.2e-125 403.2 153.3 13 20 1e-09 1.3e-06 28.5 4.2 3 25 500 522 498 523 0.90 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF224-201 - 707 4.2e-125 403.2 153.3 14 20 7e-11 9e-08 32.2 0.3 1 24 526 549 526 550 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF224-201 - 707 4.2e-125 403.2 153.3 15 20 3.2e-10 4.2e-07 30.1 1.2 2 25 555 578 555 579 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF224-201 - 707 4.2e-125 403.2 153.3 16 20 2e-10 2.5e-07 30.8 1.7 4 25 585 606 583 606 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF224-201 - 707 4.2e-125 403.2 153.3 17 20 0.0065 8.4 7.0 0.8 5 18 614 627 613 628 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF224-201 - 707 4.2e-125 403.2 153.3 18 20 1.4e-06 0.0018 18.6 0.9 7 25 644 662 643 663 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF224-201 - 707 4.2e-125 403.2 153.3 19 20 1.9e-07 0.00025 21.3 0.4 1 25 666 690 666 691 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF224-201 - 707 4.2e-125 403.2 153.3 20 20 0.28 3.6e+02 1.8 0.1 1 14 694 707 694 707 0.93 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZNF224-201 - 707 5e-74 240.9 167.5 1 18 1.4e-06 0.0018 18.6 2.6 1 23 176 198 176 198 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF224-201 - 707 5e-74 240.9 167.5 2 18 1.6e-09 2.1e-06 27.9 2.1 1 23 204 226 204 226 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF224-201 - 707 5e-74 240.9 167.5 3 18 5.4e-08 6.9e-05 23.1 1.4 1 23 232 254 232 254 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF224-201 - 707 5e-74 240.9 167.5 4 18 1.7e-07 0.00021 21.5 0.4 1 23 260 282 260 282 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF224-201 - 707 5e-74 240.9 167.5 5 18 2.7e-06 0.0034 17.7 2.7 1 23 288 310 288 310 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF224-201 - 707 5e-74 240.9 167.5 6 18 3.7e-08 4.8e-05 23.6 1.6 1 23 316 338 316 338 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF224-201 - 707 5e-74 240.9 167.5 7 18 0.0016 2.1 9.0 3.6 1 23 344 366 344 366 0.94 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF224-201 - 707 5e-74 240.9 167.5 8 18 1.8e-06 0.0023 18.3 2.2 1 23 372 394 372 394 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF224-201 - 707 5e-74 240.9 167.5 9 18 2.7e-05 0.034 14.6 3.9 1 23 400 422 400 422 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF224-201 - 707 5e-74 240.9 167.5 10 18 0.00014 0.18 12.4 0.6 1 23 428 450 428 450 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF224-201 - 707 5e-74 240.9 167.5 11 18 3.7e-07 0.00047 20.5 2.0 1 23 456 478 456 478 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF224-201 - 707 5e-74 240.9 167.5 12 18 1.5e-08 1.9e-05 24.8 4.6 1 23 484 506 484 506 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF224-201 - 707 5e-74 240.9 167.5 13 18 1.6e-06 0.0021 18.4 1.1 1 23 512 534 512 534 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF224-201 - 707 5e-74 240.9 167.5 14 18 9.3e-06 0.012 16.0 1.4 1 23 540 562 540 562 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF224-201 - 707 5e-74 240.9 167.5 15 18 8.6e-09 1.1e-05 25.6 2.9 1 23 568 590 568 590 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF224-201 - 707 5e-74 240.9 167.5 16 18 4.3e-05 0.055 13.9 1.1 1 23 596 618 596 618 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF224-201 - 707 5e-74 240.9 167.5 17 18 5.1e-07 0.00066 20.0 0.5 1 23 652 674 652 674 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF224-201 - 707 5e-74 240.9 167.5 18 18 6e-07 0.00077 19.8 1.7 2 23 681 702 680 702 0.97 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZNF224-201 - 707 9.9e-40 131.8 161.5 1 19 5.3 6.8e+03 -1.5 0.7 9 23 156 170 154 171 0.87 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF224-201 - 707 9.9e-40 131.8 161.5 2 19 0.00012 0.16 12.9 2.0 1 23 176 198 176 199 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF224-201 - 707 9.9e-40 131.8 161.5 3 19 1.5e-06 0.002 18.8 1.9 1 23 204 226 204 227 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF224-201 - 707 9.9e-40 131.8 161.5 4 19 2.3e-05 0.029 15.2 1.4 1 23 232 254 232 255 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF224-201 - 707 9.9e-40 131.8 161.5 5 19 0.00094 1.2 10.2 0.4 1 23 260 282 260 283 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF224-201 - 707 9.9e-40 131.8 161.5 6 19 5.5e-06 0.007 17.1 2.1 1 23 288 310 288 311 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF224-201 - 707 9.9e-40 131.8 161.5 7 19 0.00018 0.24 12.4 0.8 1 23 316 338 316 339 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF224-201 - 707 9.9e-40 131.8 161.5 8 19 0.00012 0.15 12.9 2.6 1 22 344 365 344 367 0.85 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF224-201 - 707 9.9e-40 131.8 161.5 9 19 0.00062 0.79 10.7 2.7 1 23 372 394 372 395 0.91 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF224-201 - 707 9.9e-40 131.8 161.5 10 19 0.00038 0.49 11.4 3.5 1 23 400 422 400 423 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF224-201 - 707 9.9e-40 131.8 161.5 11 19 0.00067 0.86 10.6 0.5 1 23 428 450 428 451 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF224-201 - 707 9.9e-40 131.8 161.5 12 19 2.4e-05 0.031 15.1 2.2 1 23 456 478 456 479 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF224-201 - 707 9.9e-40 131.8 161.5 13 19 3.1e-05 0.04 14.8 3.9 1 23 484 506 484 507 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF224-201 - 707 9.9e-40 131.8 161.5 14 19 5.7e-05 0.073 13.9 0.8 1 23 512 534 512 535 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF224-201 - 707 9.9e-40 131.8 161.5 15 19 0.00095 1.2 10.1 2.0 1 23 540 562 540 563 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF224-201 - 707 9.9e-40 131.8 161.5 16 19 9.1e-06 0.012 16.4 2.5 1 23 568 590 568 591 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF224-201 - 707 9.9e-40 131.8 161.5 17 19 0.00021 0.27 12.2 1.1 1 23 596 618 596 619 0.88 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF224-201 - 707 9.9e-40 131.8 161.5 18 19 0.0006 0.76 10.8 0.2 1 23 652 674 652 675 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF224-201 - 707 9.9e-40 131.8 161.5 19 19 0.0037 4.7 8.3 1.7 1 23 680 702 680 703 0.91 C2H2-type zinc finger KRAB PF01352.27 42 ZNF224-201 - 707 4.5e-22 77.4 0.2 1 1 1.2e-24 1.6e-21 75.7 0.2 2 42 8 48 7 48 0.98 KRAB box zf-C2H2_jaz PF12171.8 27 ZNF224-201 - 707 6.1e-14 51.9 102.8 1 18 0.56 7.1e+02 0.7 0.6 2 11 176 185 175 195 0.91 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF224-201 - 707 6.1e-14 51.9 102.8 2 18 0.0021 2.7 8.4 2.5 2 22 204 224 203 224 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF224-201 - 707 6.1e-14 51.9 102.8 3 18 0.00022 0.28 11.5 0.1 2 20 232 250 231 252 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF224-201 - 707 6.1e-14 51.9 102.8 4 18 5.1e-06 0.0065 16.7 0.4 2 22 260 280 259 280 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF224-201 - 707 6.1e-14 51.9 102.8 5 18 0.066 84 3.6 0.3 2 11 288 297 287 306 0.87 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF224-201 - 707 6.1e-14 51.9 102.8 6 18 0.00054 0.69 10.3 0.1 2 20 316 334 315 335 0.91 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF224-201 - 707 6.1e-14 51.9 102.8 7 18 0.045 58 4.1 0.6 2 12 344 354 343 359 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF224-201 - 707 6.1e-14 51.9 102.8 8 18 0.053 68 3.9 0.6 2 12 372 382 371 392 0.85 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF224-201 - 707 6.1e-14 51.9 102.8 9 18 0.01 13 6.2 3.3 2 24 400 422 399 423 0.89 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF224-201 - 707 6.1e-14 51.9 102.8 10 18 0.00055 0.71 10.2 0.0 2 22 428 448 427 448 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF224-201 - 707 6.1e-14 51.9 102.8 11 18 0.023 30 5.1 0.5 2 13 456 467 455 476 0.87 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF224-201 - 707 6.1e-14 51.9 102.8 12 18 0.088 1.1e+02 3.2 0.9 2 21 484 503 483 504 0.85 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF224-201 - 707 6.1e-14 51.9 102.8 13 18 0.011 14 6.1 0.5 2 22 512 532 511 532 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF224-201 - 707 6.1e-14 51.9 102.8 14 18 0.067 86 3.6 0.5 2 11 540 549 539 559 0.91 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF224-201 - 707 6.1e-14 51.9 102.8 15 18 0.0013 1.6 9.1 0.5 2 22 568 588 567 588 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF224-201 - 707 6.1e-14 51.9 102.8 16 18 0.033 42 4.6 0.0 2 21 596 615 595 616 0.79 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF224-201 - 707 6.1e-14 51.9 102.8 17 18 0.0035 4.5 7.7 0.0 2 22 652 672 651 672 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF224-201 - 707 6.1e-14 51.9 102.8 18 18 0.59 7.6e+02 0.6 0.8 2 22 680 700 679 700 0.90 Zinc-finger double-stranded RNA-binding zf-C2H2_6 PF13912.6 27 ZNF224-201 - 707 8.4e-13 48.0 133.2 1 17 1.6e-05 0.02 14.9 1.3 2 26 176 200 175 201 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF224-201 - 707 8.4e-13 48.0 133.2 2 17 0.00086 1.1 9.3 3.0 2 12 204 214 203 227 0.83 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF224-201 - 707 8.4e-13 48.0 133.2 3 17 0.0029 3.8 7.6 1.5 2 24 232 254 232 257 0.90 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF224-201 - 707 8.4e-13 48.0 133.2 4 17 0.029 37 4.5 0.7 2 11 260 269 260 269 0.95 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF224-201 - 707 8.4e-13 48.0 133.2 5 17 0.00075 0.96 9.5 0.9 2 11 288 297 288 297 0.97 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF224-201 - 707 8.4e-13 48.0 133.2 6 17 6.1e-06 0.0079 16.2 0.2 2 21 316 335 316 339 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF224-201 - 707 8.4e-13 48.0 133.2 7 17 0.044 57 3.9 1.0 2 11 344 353 344 353 0.95 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF224-201 - 707 8.4e-13 48.0 133.2 8 17 0.00033 0.42 10.7 1.3 2 12 372 382 372 382 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF224-201 - 707 8.4e-13 48.0 133.2 9 17 0.048 62 3.8 1.3 2 11 400 409 400 411 0.91 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF224-201 - 707 8.4e-13 48.0 133.2 10 17 0.16 2e+02 2.1 0.6 2 12 428 438 428 439 0.88 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF224-201 - 707 8.4e-13 48.0 133.2 11 17 9.4e-05 0.12 12.4 1.0 2 12 456 466 455 474 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF224-201 - 707 8.4e-13 48.0 133.2 12 17 0.012 15 5.7 0.7 2 12 484 494 484 504 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF224-201 - 707 8.4e-13 48.0 133.2 13 17 0.014 18 5.5 1.6 2 24 512 534 512 537 0.89 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF224-201 - 707 8.4e-13 48.0 133.2 14 17 0.0003 0.38 10.8 0.8 2 12 540 550 540 550 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF224-201 - 707 8.4e-13 48.0 133.2 15 17 0.0041 5.3 7.2 0.6 2 12 568 578 568 588 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF224-201 - 707 8.4e-13 48.0 133.2 16 17 0.0013 1.6 8.8 0.6 2 12 596 606 596 606 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF224-201 - 707 8.4e-13 48.0 133.2 17 17 0.089 1.1e+02 2.9 0.2 2 26 652 676 652 677 0.89 C2H2-type zinc finger Zn-ribbon_8 PF09723.10 40 ZNF224-201 - 707 1.7e-07 31.3 111.8 1 17 0.078 1e+02 3.2 0.4 15 35 163 184 161 189 0.63 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF224-201 - 707 1.7e-07 31.3 111.8 2 17 0.00021 0.26 11.4 3.5 6 38 204 243 203 245 0.85 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF224-201 - 707 1.7e-07 31.3 111.8 3 17 0.00044 0.57 10.4 3.4 6 34 232 267 230 271 0.90 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF224-201 - 707 1.7e-07 31.3 111.8 4 17 0.016 21 5.4 5.6 6 34 260 295 259 300 0.90 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF224-201 - 707 1.7e-07 31.3 111.8 5 17 0.25 3.2e+02 1.5 4.7 6 35 288 324 286 327 0.74 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF224-201 - 707 1.7e-07 31.3 111.8 6 17 0.014 17 5.6 6.9 6 34 316 351 314 358 0.81 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF224-201 - 707 1.7e-07 31.3 111.8 7 17 0.0025 3.2 7.9 6.8 6 35 344 380 343 385 0.84 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF224-201 - 707 1.7e-07 31.3 111.8 8 17 0.00095 1.2 9.3 5.5 6 34 372 407 370 411 0.91 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF224-201 - 707 1.7e-07 31.3 111.8 9 17 0.0014 1.8 8.8 6.0 6 39 400 440 399 441 0.88 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF224-201 - 707 1.7e-07 31.3 111.8 10 17 0.001 1.3 9.2 3.3 6 38 428 467 427 469 0.85 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF224-201 - 707 1.7e-07 31.3 111.8 11 17 0.0061 7.8 6.7 7.1 6 36 456 493 455 495 0.77 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF224-201 - 707 1.7e-07 31.3 111.8 12 17 0.00015 0.19 11.9 5.5 6 34 484 519 483 525 0.89 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF224-201 - 707 1.7e-07 31.3 111.8 13 17 0.00052 0.66 10.1 4.5 6 34 512 547 510 550 0.91 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF224-201 - 707 1.7e-07 31.3 111.8 14 17 0.0044 5.6 7.2 6.9 6 36 540 577 539 580 0.87 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF224-201 - 707 1.7e-07 31.3 111.8 15 17 0.00022 0.28 11.3 6.0 6 34 568 603 567 606 0.90 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF224-201 - 707 1.7e-07 31.3 111.8 16 17 0.0032 4.1 7.6 0.8 6 30 596 627 594 635 0.68 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF224-201 - 707 1.7e-07 31.3 111.8 17 17 0.0045 5.7 7.1 2.6 6 32 652 685 651 692 0.80 Zinc ribbon domain # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF224-201.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF224-201.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF224-201.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF224-201.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF224-201.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:01:51 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF224-202.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF224-202.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF224-202.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF224-202.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF224-202.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:01:51 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF224-203.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF224-203.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF224-203.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF224-203.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF224-203.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:01:52 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF224-204.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF224-204.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF224-204.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF224-204.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF224-204.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:01:52 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF224-205.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF224-205.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF224-205.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF224-205.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF224-205.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:01:52 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- KRAB PF01352.27 42 ZNF224-206 - 54 1e-23 82.7 0.2 1 1 7e-28 1.3e-23 82.4 0.2 2 42 8 48 7 48 0.98 KRAB box # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF224-206.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF224-206.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF224-206.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF224-206.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF224-206.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:01:53 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF224-207.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF224-207.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF224-207.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF224-207.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF224-207.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:01:53 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZNF224-208 - 622 2.4e-126 407.1 153.3 1 20 3.8e-06 0.0053 17.1 2.9 3 24 79 100 77 100 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF224-208 - 622 2.4e-126 407.1 153.3 2 20 1.8e-08 2.5e-05 24.5 0.5 1 25 105 129 105 130 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF224-208 - 622 2.4e-126 407.1 153.3 3 20 8.4e-11 1.2e-07 31.9 1.4 1 25 133 157 133 158 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF224-208 - 622 2.4e-126 407.1 153.3 4 20 2.8e-10 3.8e-07 30.2 1.7 1 26 161 186 161 186 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF224-208 - 622 2.4e-126 407.1 153.3 5 20 6.2e-11 8.6e-08 32.3 0.3 2 24 190 212 189 212 0.97 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF224-208 - 622 2.4e-126 407.1 153.3 6 20 1.2e-09 1.6e-06 28.2 0.7 2 25 218 241 217 242 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF224-208 - 622 2.4e-126 407.1 153.3 7 20 2.4e-10 3.3e-07 30.4 0.7 1 24 245 268 245 270 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF224-208 - 622 2.4e-126 407.1 153.3 8 20 1.3e-08 1.8e-05 24.9 2.4 2 24 274 296 273 297 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF224-208 - 622 2.4e-126 407.1 153.3 9 20 6.4e-10 8.8e-07 29.1 1.1 2 24 302 324 302 326 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF224-208 - 622 2.4e-126 407.1 153.3 10 20 7.1e-08 9.7e-05 22.6 4.2 4 26 332 354 330 354 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF224-208 - 622 2.4e-126 407.1 153.3 11 20 2e-10 2.7e-07 30.7 0.5 2 25 358 381 357 382 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF224-208 - 622 2.4e-126 407.1 153.3 12 20 2.1e-10 2.9e-07 30.6 0.7 2 25 386 409 386 410 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF224-208 - 622 2.4e-126 407.1 153.3 13 20 8.2e-10 1.1e-06 28.7 4.2 3 25 415 437 413 438 0.90 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF224-208 - 622 2.4e-126 407.1 153.3 14 20 5.6e-11 7.8e-08 32.4 0.3 1 24 441 464 441 465 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF224-208 - 622 2.4e-126 407.1 153.3 15 20 2.6e-10 3.6e-07 30.3 1.2 2 25 470 493 470 494 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF224-208 - 622 2.4e-126 407.1 153.3 16 20 1.6e-10 2.2e-07 31.0 1.7 4 25 500 521 498 521 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF224-208 - 622 2.4e-126 407.1 153.3 17 20 0.0052 7.2 7.2 0.8 5 18 529 542 528 543 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF224-208 - 622 2.4e-126 407.1 153.3 18 20 1.1e-06 0.0016 18.8 0.9 7 25 559 577 558 578 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF224-208 - 622 2.4e-126 407.1 153.3 19 20 1.5e-07 0.00021 21.5 0.4 1 25 581 605 581 606 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF224-208 - 622 2.4e-126 407.1 153.3 20 20 0.23 3.1e+02 2.0 0.1 1 14 609 622 609 622 0.93 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZNF224-208 - 622 4.3e-75 244.2 167.8 1 19 10 1.4e+04 -3.1 0.6 8 23 70 85 69 85 0.79 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF224-208 - 622 4.3e-75 244.2 167.8 2 19 1.1e-06 0.0015 18.9 2.6 1 23 91 113 91 113 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF224-208 - 622 4.3e-75 244.2 167.8 3 19 1.3e-09 1.8e-06 28.1 2.1 1 23 119 141 119 141 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF224-208 - 622 4.3e-75 244.2 167.8 4 19 4.3e-08 5.9e-05 23.3 1.4 1 23 147 169 147 169 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF224-208 - 622 4.3e-75 244.2 167.8 5 19 1.3e-07 0.00018 21.8 0.4 1 23 175 197 175 197 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF224-208 - 622 4.3e-75 244.2 167.8 6 19 2.1e-06 0.0029 18.0 2.7 1 23 203 225 203 225 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF224-208 - 622 4.3e-75 244.2 167.8 7 19 3e-08 4.1e-05 23.8 1.6 1 23 231 253 231 253 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF224-208 - 622 4.3e-75 244.2 167.8 8 19 0.0013 1.8 9.2 3.6 1 23 259 281 259 281 0.94 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF224-208 - 622 4.3e-75 244.2 167.8 9 19 1.5e-06 0.002 18.5 2.2 1 23 287 309 287 309 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF224-208 - 622 4.3e-75 244.2 167.8 10 19 2.2e-05 0.03 14.8 3.9 1 23 315 337 315 337 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF224-208 - 622 4.3e-75 244.2 167.8 11 19 0.00011 0.15 12.6 0.6 1 23 343 365 343 365 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF224-208 - 622 4.3e-75 244.2 167.8 12 19 2.9e-07 0.0004 20.7 2.0 1 23 371 393 371 393 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF224-208 - 622 4.3e-75 244.2 167.8 13 19 1.2e-08 1.7e-05 25.0 4.6 1 23 399 421 399 421 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF224-208 - 622 4.3e-75 244.2 167.8 14 19 1.3e-06 0.0018 18.6 1.1 1 23 427 449 427 449 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF224-208 - 622 4.3e-75 244.2 167.8 15 19 7.4e-06 0.01 16.2 1.4 1 23 455 477 455 477 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF224-208 - 622 4.3e-75 244.2 167.8 16 19 6.9e-09 9.5e-06 25.8 2.9 1 23 483 505 483 505 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF224-208 - 622 4.3e-75 244.2 167.8 17 19 3.4e-05 0.047 14.2 1.1 1 23 511 533 511 533 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF224-208 - 622 4.3e-75 244.2 167.8 18 19 4.1e-07 0.00057 20.2 0.5 1 23 567 589 567 589 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF224-208 - 622 4.3e-75 244.2 167.8 19 19 4.8e-07 0.00067 20.0 1.7 2 23 596 617 595 617 0.97 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZNF224-208 - 622 6.7e-41 135.4 161.5 1 19 4.3 5.9e+03 -1.3 0.7 9 23 71 85 69 86 0.87 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF224-208 - 622 6.7e-41 135.4 161.5 2 19 9.9e-05 0.14 13.1 2.0 1 23 91 113 91 114 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF224-208 - 622 6.7e-41 135.4 161.5 3 19 1.2e-06 0.0017 19.0 1.9 1 23 119 141 119 142 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF224-208 - 622 6.7e-41 135.4 161.5 4 19 1.8e-05 0.025 15.4 1.4 1 23 147 169 147 170 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF224-208 - 622 6.7e-41 135.4 161.5 5 19 0.00075 1 10.4 0.4 1 23 175 197 175 198 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF224-208 - 622 6.7e-41 135.4 161.5 6 19 4.4e-06 0.006 17.3 2.1 1 23 203 225 203 226 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF224-208 - 622 6.7e-41 135.4 161.5 7 19 0.00015 0.2 12.6 0.8 1 23 231 253 231 254 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF224-208 - 622 6.7e-41 135.4 161.5 8 19 9.6e-05 0.13 13.1 2.6 1 22 259 280 259 282 0.85 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF224-208 - 622 6.7e-41 135.4 161.5 9 19 0.00049 0.68 10.9 2.7 1 23 287 309 287 310 0.91 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF224-208 - 622 6.7e-41 135.4 161.5 10 19 0.00031 0.42 11.6 3.5 1 23 315 337 315 338 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF224-208 - 622 6.7e-41 135.4 161.5 11 19 0.00053 0.74 10.8 0.5 1 23 343 365 343 366 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF224-208 - 622 6.7e-41 135.4 161.5 12 19 1.9e-05 0.026 15.3 2.2 1 23 371 393 371 394 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF224-208 - 622 6.7e-41 135.4 161.5 13 19 2.5e-05 0.035 15.0 3.9 1 23 399 421 399 422 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF224-208 - 622 6.7e-41 135.4 161.5 14 19 4.5e-05 0.063 14.2 0.8 1 23 427 449 427 450 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF224-208 - 622 6.7e-41 135.4 161.5 15 19 0.00076 1 10.3 2.0 1 23 455 477 455 478 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF224-208 - 622 6.7e-41 135.4 161.5 16 19 7.2e-06 0.01 16.6 2.5 1 23 483 505 483 506 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF224-208 - 622 6.7e-41 135.4 161.5 17 19 0.00017 0.23 12.4 1.1 1 23 511 533 511 534 0.88 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF224-208 - 622 6.7e-41 135.4 161.5 18 19 0.00048 0.66 11.0 0.2 1 23 567 589 567 590 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF224-208 - 622 6.7e-41 135.4 161.5 19 19 0.0029 4 8.5 1.8 1 23 595 617 595 618 0.91 C2H2-type zinc finger zf-C2H2_jaz PF12171.8 27 ZNF224-208 - 622 5.2e-15 55.3 102.8 1 18 0.45 6.2e+02 0.9 0.6 2 11 91 100 90 110 0.91 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF224-208 - 622 5.2e-15 55.3 102.8 2 18 0.0017 2.3 8.6 2.5 2 22 119 139 118 139 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF224-208 - 622 5.2e-15 55.3 102.8 3 18 0.00017 0.24 11.7 0.1 2 20 147 165 146 167 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF224-208 - 622 5.2e-15 55.3 102.8 4 18 4.1e-06 0.0057 16.9 0.4 2 22 175 195 174 195 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF224-208 - 622 5.2e-15 55.3 102.8 5 18 0.053 73 3.8 0.3 2 11 203 212 202 221 0.87 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF224-208 - 622 5.2e-15 55.3 102.8 6 18 0.00043 0.6 10.5 0.1 2 20 231 249 230 250 0.91 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF224-208 - 622 5.2e-15 55.3 102.8 7 18 0.036 50 4.3 0.6 2 12 259 269 258 274 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF224-208 - 622 5.2e-15 55.3 102.8 8 18 0.043 59 4.1 0.6 2 12 287 297 286 307 0.85 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF224-208 - 622 5.2e-15 55.3 102.8 9 18 0.0082 11 6.4 3.3 2 24 315 337 314 338 0.89 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF224-208 - 622 5.2e-15 55.3 102.8 10 18 0.00044 0.61 10.4 0.0 2 22 343 363 342 363 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF224-208 - 622 5.2e-15 55.3 102.8 11 18 0.019 26 5.3 0.5 2 13 371 382 370 391 0.87 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF224-208 - 622 5.2e-15 55.3 102.8 12 18 0.071 98 3.4 0.9 2 21 399 418 398 419 0.85 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF224-208 - 622 5.2e-15 55.3 102.8 13 18 0.0091 13 6.3 0.5 2 22 427 447 426 447 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF224-208 - 622 5.2e-15 55.3 102.8 14 18 0.054 74 3.8 0.5 2 11 455 464 454 474 0.91 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF224-208 - 622 5.2e-15 55.3 102.8 15 18 0.001 1.4 9.3 0.5 2 22 483 503 482 503 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF224-208 - 622 5.2e-15 55.3 102.8 16 18 0.026 36 4.8 0.0 2 21 511 530 510 531 0.79 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF224-208 - 622 5.2e-15 55.3 102.8 17 18 0.0028 3.9 7.9 0.0 2 22 567 587 566 587 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF224-208 - 622 5.2e-15 55.3 102.8 18 18 0.48 6.6e+02 0.8 0.8 2 22 595 615 594 615 0.90 Zinc-finger double-stranded RNA-binding zf-C2H2_6 PF13912.6 27 ZNF224-208 - 622 6.3e-14 51.6 133.0 1 17 1.3e-05 0.017 15.1 1.3 2 26 91 115 90 116 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF224-208 - 622 6.3e-14 51.6 133.0 2 17 0.00069 0.95 9.5 3.0 2 12 119 129 118 142 0.83 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF224-208 - 622 6.3e-14 51.6 133.0 3 17 0.0023 3.2 7.8 1.5 2 24 147 169 147 172 0.90 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF224-208 - 622 6.3e-14 51.6 133.0 4 17 0.023 32 4.7 0.7 2 11 175 184 175 184 0.95 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF224-208 - 622 6.3e-14 51.6 133.0 5 17 0.00061 0.83 9.7 0.9 2 11 203 212 203 212 0.97 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF224-208 - 622 6.3e-14 51.6 133.0 6 17 4.9e-06 0.0068 16.4 0.2 2 21 231 250 231 254 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF224-208 - 622 6.3e-14 51.6 133.0 7 17 0.036 49 4.1 1.0 2 11 259 268 259 268 0.95 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF224-208 - 622 6.3e-14 51.6 133.0 8 17 0.00027 0.37 10.9 1.3 2 12 287 297 287 297 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF224-208 - 622 6.3e-14 51.6 133.0 9 17 0.039 54 4.0 1.3 2 11 315 324 315 326 0.91 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF224-208 - 622 6.3e-14 51.6 133.0 10 17 0.13 1.8e+02 2.3 0.6 2 12 343 353 343 354 0.88 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF224-208 - 622 6.3e-14 51.6 133.0 11 17 7.6e-05 0.1 12.6 1.0 2 12 371 381 370 389 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF224-208 - 622 6.3e-14 51.6 133.0 12 17 0.0094 13 5.9 0.7 2 12 399 409 399 419 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF224-208 - 622 6.3e-14 51.6 133.0 13 17 0.011 15 5.7 1.6 2 24 427 449 427 452 0.89 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF224-208 - 622 6.3e-14 51.6 133.0 14 17 0.00024 0.33 11.0 0.8 2 12 455 465 455 465 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF224-208 - 622 6.3e-14 51.6 133.0 15 17 0.0033 4.6 7.4 0.6 2 12 483 493 483 503 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF224-208 - 622 6.3e-14 51.6 133.0 16 17 0.001 1.4 9.0 0.6 2 12 511 521 511 521 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF224-208 - 622 6.3e-14 51.6 133.0 17 17 0.071 98 3.1 0.2 2 26 567 591 567 592 0.89 C2H2-type zinc finger Zn-ribbon_8 PF09723.10 40 ZNF224-208 - 622 2.6e-08 33.9 111.8 1 17 0.062 86 3.4 0.4 15 35 78 99 76 104 0.63 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF224-208 - 622 2.6e-08 33.9 111.8 2 17 0.00017 0.23 11.6 3.5 6 38 119 158 118 160 0.85 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF224-208 - 622 2.6e-08 33.9 111.8 3 17 0.00027 0.37 11.0 2.9 6 34 147 182 146 185 0.90 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF224-208 - 622 2.6e-08 33.9 111.8 4 17 0.013 17 5.6 5.5 6 34 175 210 174 215 0.90 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF224-208 - 622 2.6e-08 33.9 111.8 5 17 0.15 2.1e+02 2.2 4.7 6 37 203 241 202 243 0.74 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF224-208 - 622 2.6e-08 33.9 111.8 6 17 0.0097 13 6.0 6.6 6 34 231 266 230 272 0.80 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF224-208 - 622 2.6e-08 33.9 111.8 7 17 0.002 2.8 8.1 6.8 6 35 259 295 257 299 0.84 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF224-208 - 622 2.6e-08 33.9 111.8 8 17 0.00078 1.1 9.5 5.5 6 34 287 322 285 325 0.91 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF224-208 - 622 2.6e-08 33.9 111.8 9 17 0.0015 2 8.6 6.4 6 39 315 355 314 356 0.88 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF224-208 - 622 2.6e-08 33.9 111.8 10 17 0.0011 1.5 9.0 3.7 6 38 343 382 341 384 0.85 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF224-208 - 622 2.6e-08 33.9 111.8 11 17 0.032 44 4.3 7.1 6 33 371 405 369 405 0.78 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF224-208 - 622 2.6e-08 33.9 111.8 12 17 0.00015 0.21 11.7 5.8 6 34 399 434 398 439 0.89 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF224-208 - 622 2.6e-08 33.9 111.8 13 17 0.00045 0.61 10.2 4.6 6 34 427 462 425 465 0.91 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF224-208 - 622 2.6e-08 33.9 111.8 14 17 0.004 5.6 7.2 7.0 6 36 455 492 454 494 0.87 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF224-208 - 622 2.6e-08 33.9 111.8 15 17 0.00022 0.3 11.2 6.3 6 34 483 518 482 521 0.90 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF224-208 - 622 2.6e-08 33.9 111.8 16 17 0.0026 3.6 7.8 0.8 6 30 511 542 510 550 0.68 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF224-208 - 622 2.6e-08 33.9 111.8 17 17 0.0024 3.3 7.9 2.0 6 32 567 600 566 605 0.80 Zinc ribbon domain BolA PF01722.18 76 ZNF224-208 - 622 7.5e-07 29.3 22.5 1 6 0.0019 2.7 8.4 0.2 23 53 111 141 83 143 0.86 BolA-like protein BolA PF01722.18 76 ZNF224-208 - 622 7.5e-07 29.3 22.5 2 6 1.1e-06 0.0015 18.8 0.3 14 55 186 227 157 230 0.91 BolA-like protein BolA PF01722.18 76 ZNF224-208 - 622 7.5e-07 29.3 22.5 3 6 0.0079 11 6.4 0.1 27 53 227 253 225 255 0.91 BolA-like protein BolA PF01722.18 76 ZNF224-208 - 622 7.5e-07 29.3 22.5 4 6 3.8 5.3e+03 -2.2 0.0 19 53 278 309 274 316 0.79 BolA-like protein BolA PF01722.18 76 ZNF224-208 - 622 7.5e-07 29.3 22.5 5 6 0.043 59 4.0 0.7 13 53 409 449 388 451 0.78 BolA-like protein BolA PF01722.18 76 ZNF224-208 - 622 7.5e-07 29.3 22.5 6 6 0.041 57 4.1 0.3 19 53 473 505 468 507 0.87 BolA-like protein # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF224-208.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF224-208.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF224-208.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF224-208.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF224-208.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:01:54 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZNF225-201 - 706 3.2e-124 400.3 135.5 1 19 0.00037 0.29 11.7 0.1 4 24 165 185 163 185 0.88 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF225-201 - 706 3.2e-124 400.3 135.5 2 19 2.4e-09 1.9e-06 28.0 0.0 1 25 190 214 190 215 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF225-201 - 706 3.2e-124 400.3 135.5 3 19 1.4e-10 1.1e-07 32.0 0.8 1 25 218 242 218 243 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF225-201 - 706 3.2e-124 400.3 135.5 4 19 3.3e-07 0.00026 21.3 1.7 2 26 247 271 246 271 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF225-201 - 706 3.2e-124 400.3 135.5 5 19 3e-10 2.4e-07 30.9 1.5 2 25 275 298 274 299 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF225-201 - 706 3.2e-124 400.3 135.5 6 19 4.4e-09 3.5e-06 27.2 0.4 1 24 302 325 302 326 0.97 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF225-201 - 706 3.2e-124 400.3 135.5 7 19 8.2e-10 6.4e-07 29.5 0.6 1 24 330 353 330 355 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF225-201 - 706 3.2e-124 400.3 135.5 8 19 2.3e-10 1.8e-07 31.3 0.9 1 24 358 381 358 382 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF225-201 - 706 3.2e-124 400.3 135.5 9 19 1e-09 7.9e-07 29.2 0.3 1 24 386 409 386 411 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF225-201 - 706 3.2e-124 400.3 135.5 10 19 2.1e-07 0.00016 21.9 1.6 4 26 417 439 416 439 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF225-201 - 706 3.2e-124 400.3 135.5 11 19 3.1e-10 2.4e-07 30.9 0.5 2 24 443 465 442 466 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF225-201 - 706 3.2e-124 400.3 135.5 12 19 6.4e-10 5e-07 29.9 0.6 4 25 473 494 471 495 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF225-201 - 706 3.2e-124 400.3 135.5 13 19 6.2e-10 4.9e-07 29.9 1.6 2 25 499 522 498 523 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF225-201 - 706 3.2e-124 400.3 135.5 14 19 2.2e-10 1.7e-07 31.4 0.7 2 26 527 551 526 551 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF225-201 - 706 3.2e-124 400.3 135.5 15 19 2.8e-11 2.2e-08 34.1 0.4 1 25 554 578 554 579 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF225-201 - 706 3.2e-124 400.3 135.5 16 19 4.7e-07 0.00036 20.8 1.4 5 25 586 606 584 607 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF225-201 - 706 3.2e-124 400.3 135.5 17 19 4.9e-10 3.8e-07 30.2 3.6 4 24 613 633 611 634 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF225-201 - 706 3.2e-124 400.3 135.5 18 19 5.5e-05 0.043 14.3 0.2 5 23 642 660 640 663 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF225-201 - 706 3.2e-124 400.3 135.5 19 19 0.022 17 6.1 0.2 7 26 672 691 671 691 0.85 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZNF225-201 - 706 7.7e-80 259.1 152.8 1 20 0.13 1e+02 3.6 0.0 5 21 152 168 150 169 0.88 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF225-201 - 706 7.7e-80 259.1 152.8 2 20 1e-07 7.9e-05 22.9 3.5 1 23 176 198 176 198 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF225-201 - 706 7.7e-80 259.1 152.8 3 20 1.1e-08 9e-06 25.9 1.0 1 23 204 226 204 226 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF225-201 - 706 7.7e-80 259.1 152.8 4 20 2.3e-07 0.00018 21.8 1.0 1 23 232 254 232 254 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF225-201 - 706 7.7e-80 259.1 152.8 5 20 1.7e-06 0.0013 19.1 1.4 1 23 260 282 260 282 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF225-201 - 706 7.7e-80 259.1 152.8 6 20 4.6e-05 0.036 14.5 3.5 1 23 288 310 288 310 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF225-201 - 706 7.7e-80 259.1 152.8 7 20 1.2e-06 0.00094 19.5 0.6 1 23 316 338 316 338 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF225-201 - 706 7.7e-80 259.1 152.8 8 20 2.4e-06 0.0019 18.6 0.8 1 23 344 366 344 366 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF225-201 - 706 7.7e-80 259.1 152.8 9 20 1.4e-06 0.0011 19.3 0.3 1 23 372 394 372 394 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF225-201 - 706 7.7e-80 259.1 152.8 10 20 4.4e-06 0.0034 17.7 1.3 1 23 400 422 400 422 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF225-201 - 706 7.7e-80 259.1 152.8 11 20 0.00014 0.11 13.0 0.7 1 23 428 450 428 450 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF225-201 - 706 7.7e-80 259.1 152.8 12 20 2.2e-05 0.017 15.5 0.9 1 23 456 478 456 478 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF225-201 - 706 7.7e-80 259.1 152.8 13 20 3.1e-08 2.4e-05 24.5 1.9 1 23 484 506 484 506 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF225-201 - 706 7.7e-80 259.1 152.8 14 20 1.9e-08 1.5e-05 25.2 1.8 1 23 512 534 512 534 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF225-201 - 706 7.7e-80 259.1 152.8 15 20 1.4e-07 0.00011 22.5 0.6 1 23 540 562 540 562 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF225-201 - 706 7.7e-80 259.1 152.8 16 20 2.3e-07 0.00018 21.8 1.0 1 23 568 590 568 590 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF225-201 - 706 7.7e-80 259.1 152.8 17 20 6.9e-08 5.4e-05 23.4 2.4 1 23 596 618 596 618 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF225-201 - 706 7.7e-80 259.1 152.8 18 20 0.00073 0.57 10.7 2.4 1 23 624 646 624 646 0.87 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF225-201 - 706 7.7e-80 259.1 152.8 19 20 0.0062 4.9 7.8 0.4 2 17 653 668 652 669 0.90 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF225-201 - 706 7.7e-80 259.1 152.8 20 20 0.0013 0.99 10.0 0.3 2 16 681 695 680 697 0.90 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZNF225-201 - 706 7.9e-47 153.9 146.3 1 20 1.9 1.4e+03 0.6 0.1 6 20 153 167 151 170 0.81 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF225-201 - 706 7.9e-47 153.9 146.3 2 20 0.00011 0.082 13.8 3.0 1 23 176 198 176 199 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF225-201 - 706 7.9e-47 153.9 146.3 3 20 3.1e-05 0.024 15.4 0.7 1 23 204 226 204 227 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF225-201 - 706 7.9e-47 153.9 146.3 4 20 2.9e-06 0.0023 18.6 1.0 1 23 232 254 232 255 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF225-201 - 706 7.9e-47 153.9 146.3 5 20 0.0044 3.5 8.7 1.2 1 23 260 282 260 283 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF225-201 - 706 7.9e-47 153.9 146.3 6 20 8.5e-06 0.0067 17.2 2.5 1 23 288 310 288 311 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF225-201 - 706 7.9e-47 153.9 146.3 7 20 0.00034 0.27 12.2 0.5 1 23 316 338 316 339 0.91 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF225-201 - 706 7.9e-47 153.9 146.3 8 20 3.7e-05 0.029 15.2 0.5 1 23 344 366 344 367 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF225-201 - 706 7.9e-47 153.9 146.3 9 20 4.5e-05 0.035 14.9 0.5 1 23 372 394 372 395 0.90 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF225-201 - 706 7.9e-47 153.9 146.3 10 20 0.00052 0.41 11.6 1.1 1 23 400 422 400 423 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF225-201 - 706 7.9e-47 153.9 146.3 11 20 0.00048 0.37 11.7 0.5 1 23 428 450 428 451 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF225-201 - 706 7.9e-47 153.9 146.3 12 20 0.00091 0.71 10.9 1.2 1 23 456 478 456 479 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF225-201 - 706 7.9e-47 153.9 146.3 13 20 4.6e-06 0.0036 18.0 1.5 1 23 484 506 484 507 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF225-201 - 706 7.9e-47 153.9 146.3 14 20 7.6e-06 0.0059 17.3 1.5 1 23 512 534 512 535 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF225-201 - 706 7.9e-47 153.9 146.3 15 20 2.5e-05 0.019 15.7 0.5 1 23 540 562 540 563 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF225-201 - 706 7.9e-47 153.9 146.3 16 20 1.5e-05 0.012 16.4 0.5 1 23 568 590 568 591 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF225-201 - 706 7.9e-47 153.9 146.3 17 20 1.2e-05 0.0096 16.7 2.2 1 23 596 618 596 619 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF225-201 - 706 7.9e-47 153.9 146.3 18 20 0.0066 5.1 8.2 2.5 1 23 624 646 624 647 0.82 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF225-201 - 706 7.9e-47 153.9 146.3 19 20 2.4 1.9e+03 0.2 0.6 2 9 653 660 652 668 0.81 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF225-201 - 706 7.9e-47 153.9 146.3 20 20 0.07 55 5.0 0.1 2 15 681 694 680 697 0.84 C2H2-type zinc finger KRAB PF01352.27 42 ZNF225-201 - 706 5.8e-22 77.1 0.4 1 1 2.4e-24 1.8e-21 75.5 0.4 2 42 8 48 7 48 0.98 KRAB box zf-C2H2_6 PF13912.6 27 ZNF225-201 - 706 2.6e-20 71.9 131.8 1 19 1.2 9.1e+02 0.0 0.3 6 12 152 158 151 158 0.89 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF225-201 - 706 2.6e-20 71.9 131.8 2 19 6.9e-05 0.054 13.5 2.7 2 26 176 200 175 201 0.92 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF225-201 - 706 2.6e-20 71.9 131.8 3 19 0.00028 0.22 11.6 0.2 2 12 204 214 203 215 0.92 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF225-201 - 706 2.6e-20 71.9 131.8 4 19 0.015 12 6.0 1.2 2 22 232 252 232 256 0.80 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF225-201 - 706 2.6e-20 71.9 131.8 5 19 0.21 1.6e+02 2.4 0.6 2 11 260 269 260 269 0.96 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF225-201 - 706 2.6e-20 71.9 131.8 6 19 5.8e-05 0.045 13.8 1.1 2 26 288 312 288 313 0.90 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF225-201 - 706 2.6e-20 71.9 131.8 7 19 4.5e-05 0.035 14.1 0.5 2 21 316 335 316 339 0.91 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF225-201 - 706 2.6e-20 71.9 131.8 8 19 8.3e-05 0.065 13.3 0.5 1 24 343 366 343 369 0.90 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF225-201 - 706 2.6e-20 71.9 131.8 9 19 0.00027 0.21 11.7 0.3 2 12 372 382 372 383 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF225-201 - 706 2.6e-20 71.9 131.8 10 19 0.035 27 4.9 1.0 2 11 400 409 399 411 0.89 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF225-201 - 706 2.6e-20 71.9 131.8 11 19 0.05 39 4.4 0.2 2 12 428 438 428 452 0.87 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF225-201 - 706 2.6e-20 71.9 131.8 12 19 0.00049 0.38 10.8 0.8 2 12 456 466 456 466 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF225-201 - 706 2.6e-20 71.9 131.8 13 19 0.0026 2.1 8.5 1.4 2 24 484 506 484 509 0.84 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF225-201 - 706 2.6e-20 71.9 131.8 14 19 0.0059 4.6 7.3 1.2 2 12 512 522 512 535 0.78 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF225-201 - 706 2.6e-20 71.9 131.8 15 19 0.00062 0.49 10.5 0.7 2 24 540 562 540 565 0.87 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF225-201 - 706 2.6e-20 71.9 131.8 16 19 9.3e-05 0.072 13.1 0.4 2 13 568 579 568 592 0.80 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF225-201 - 706 2.6e-20 71.9 131.8 17 19 0.0096 7.5 6.7 1.0 2 11 596 605 596 610 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF225-201 - 706 2.6e-20 71.9 131.8 18 19 0.03 24 5.1 1.8 2 12 624 634 624 634 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF225-201 - 706 2.6e-20 71.9 131.8 19 19 3.5 2.7e+03 -1.5 0.4 3 12 681 690 681 691 0.85 C2H2-type zinc finger zf-C2H2_jaz PF12171.8 27 ZNF225-201 - 706 8e-18 64.2 90.2 1 19 0.013 10 6.5 0.1 6 21 152 167 152 168 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF225-201 - 706 8e-18 64.2 90.2 2 19 0.7 5.4e+02 1.0 0.6 2 11 176 185 175 196 0.79 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF225-201 - 706 8e-18 64.2 90.2 3 19 0.005 3.9 7.9 0.7 2 22 204 224 203 224 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF225-201 - 706 8e-18 64.2 90.2 4 19 0.042 33 4.9 0.1 2 13 232 243 231 252 0.84 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF225-201 - 706 8e-18 64.2 90.2 5 19 0.00069 0.54 10.6 0.5 2 22 260 280 259 280 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF225-201 - 706 8e-18 64.2 90.2 6 19 0.026 20 5.6 0.8 2 20 288 306 287 306 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF225-201 - 706 8e-18 64.2 90.2 7 19 0.065 50 4.3 0.0 2 20 316 334 315 335 0.79 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF225-201 - 706 8e-18 64.2 90.2 8 19 0.12 97 3.4 1.0 2 12 344 354 343 363 0.81 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF225-201 - 706 8e-18 64.2 90.2 9 19 0.046 36 4.8 0.0 2 12 372 382 371 392 0.80 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF225-201 - 706 8e-18 64.2 90.2 10 19 0.011 8.7 6.8 0.5 2 16 400 414 399 420 0.84 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF225-201 - 706 8e-18 64.2 90.2 11 19 0.0019 1.5 9.2 0.0 2 22 428 448 427 448 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF225-201 - 706 8e-18 64.2 90.2 12 19 0.07 54 4.2 0.4 2 12 456 466 455 476 0.80 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF225-201 - 706 8e-18 64.2 90.2 13 19 0.025 20 5.6 0.2 2 20 484 502 483 504 0.82 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF225-201 - 706 8e-18 64.2 90.2 14 19 0.034 27 5.2 0.2 2 20 512 530 511 532 0.79 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF225-201 - 706 8e-18 64.2 90.2 15 19 8.2e-05 0.064 13.6 0.2 2 22 540 560 539 560 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF225-201 - 706 8e-18 64.2 90.2 16 19 0.00012 0.096 13.0 0.1 2 22 568 588 567 588 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF225-201 - 706 8e-18 64.2 90.2 17 19 0.00034 0.27 11.6 0.4 2 22 596 616 595 616 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF225-201 - 706 8e-18 64.2 90.2 18 19 0.76 5.9e+02 0.9 0.2 2 21 624 643 623 644 0.85 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF225-201 - 706 8e-18 64.2 90.2 19 19 1 7.9e+02 0.5 0.1 3 18 681 696 680 697 0.83 Zinc-finger double-stranded RNA-binding zf_UBZ PF18439.1 32 ZNF225-201 - 706 1e-14 53.8 101.2 1 19 0.013 10 5.8 1.0 2 12 175 185 174 190 0.89 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF225-201 - 706 1e-14 53.8 101.2 2 19 0.026 21 4.8 0.2 3 17 204 219 202 223 0.78 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF225-201 - 706 1e-14 53.8 101.2 3 19 0.037 29 4.4 0.3 3 13 232 242 230 244 0.85 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF225-201 - 706 1e-14 53.8 101.2 4 19 9.9e-05 0.077 12.6 1.8 3 21 260 279 258 279 0.93 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF225-201 - 706 1e-14 53.8 101.2 5 19 1.5 1.1e+03 -0.7 0.5 3 14 288 299 286 307 0.78 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF225-201 - 706 1e-14 53.8 101.2 6 19 0.025 20 4.9 0.0 3 20 316 334 314 335 0.77 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF225-201 - 706 1e-14 53.8 101.2 7 19 0.0053 4.2 7.1 0.2 2 12 343 353 342 362 0.89 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF225-201 - 706 1e-14 53.8 101.2 8 19 0.03 23 4.7 0.2 3 12 372 381 370 383 0.89 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF225-201 - 706 1e-14 53.8 101.2 9 19 0.00082 0.64 9.7 0.2 1 21 398 419 398 419 0.88 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF225-201 - 706 1e-14 53.8 101.2 10 19 0.04 31 4.3 0.1 3 11 428 436 426 447 0.78 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF225-201 - 706 1e-14 53.8 101.2 11 19 0.036 28 4.4 0.3 3 12 456 465 454 466 0.89 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF225-201 - 706 1e-14 53.8 101.2 12 19 0.0022 1.7 8.3 0.2 3 17 484 499 482 503 0.80 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF225-201 - 706 1e-14 53.8 101.2 13 19 0.0014 1.1 8.9 0.2 3 20 512 530 510 531 0.85 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF225-201 - 706 1e-14 53.8 101.2 14 19 0.0099 7.7 6.2 0.1 3 15 540 552 538 559 0.75 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF225-201 - 706 1e-14 53.8 101.2 15 19 0.0044 3.5 7.3 0.1 3 15 568 580 566 587 0.80 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF225-201 - 706 1e-14 53.8 101.2 16 19 0.00028 0.22 11.1 1.0 3 21 596 615 594 615 0.92 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF225-201 - 706 1e-14 53.8 101.2 17 19 0.0069 5.4 6.7 0.1 3 12 624 633 622 643 0.84 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF225-201 - 706 1e-14 53.8 101.2 18 19 0.02 16 5.2 0.8 4 14 653 663 650 666 0.84 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF225-201 - 706 1e-14 53.8 101.2 19 19 0.12 95 2.7 0.5 4 11 681 688 678 692 0.82 Ubiquitin-Binding Zinc Finger Zn-ribbon_8 PF09723.10 40 ZNF225-201 - 706 2.2e-12 46.9 113.5 1 17 0.14 1.1e+02 3.0 0.8 17 34 168 183 150 187 0.55 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF225-201 - 706 2.2e-12 46.9 113.5 2 17 0.00012 0.093 12.9 3.2 6 38 204 243 203 245 0.87 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF225-201 - 706 2.2e-12 46.9 113.5 3 17 0.00014 0.11 12.6 1.5 6 34 232 267 231 271 0.89 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF225-201 - 706 2.2e-12 46.9 113.5 4 17 0.48 3.8e+02 1.3 3.4 8 32 262 293 247 300 0.78 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF225-201 - 706 2.2e-12 46.9 113.5 5 17 1.8 1.4e+03 -0.5 5.3 6 14 316 324 287 325 0.51 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF225-201 - 706 2.2e-12 46.9 113.5 6 17 0.062 48 4.2 0.3 6 15 316 325 315 335 0.88 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF225-201 - 706 2.2e-12 46.9 113.5 7 17 0.00037 0.29 11.3 5.9 6 35 344 380 343 384 0.84 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF225-201 - 706 2.2e-12 46.9 113.5 8 17 0.0066 5.2 7.3 5.1 6 34 372 407 370 408 0.84 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF225-201 - 706 2.2e-12 46.9 113.5 9 17 0.00062 0.48 10.6 6.1 6 39 400 440 399 441 0.86 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF225-201 - 706 2.2e-12 46.9 113.5 10 17 0.00059 0.46 10.6 5.2 6 34 428 463 426 466 0.91 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF225-201 - 706 2.2e-12 46.9 113.5 11 17 0.01 7.9 6.7 7.4 6 36 456 493 455 495 0.88 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF225-201 - 706 2.2e-12 46.9 113.5 12 17 0.004 3.1 8.0 8.4 6 36 484 521 483 523 0.80 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF225-201 - 706 2.2e-12 46.9 113.5 13 17 0.007 5.5 7.2 1.1 6 17 512 523 511 532 0.86 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF225-201 - 706 2.2e-12 46.9 113.5 14 17 2.1e-05 0.016 15.3 3.5 6 38 540 579 539 581 0.90 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF225-201 - 706 2.2e-12 46.9 113.5 15 17 0.0002 0.16 12.1 6.5 6 35 596 632 595 634 0.88 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF225-201 - 706 2.2e-12 46.9 113.5 16 17 7.7e-06 0.006 16.7 0.7 6 34 624 659 623 663 0.89 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF225-201 - 706 2.2e-12 46.9 113.5 17 17 0.063 49 4.2 6.2 7 39 653 692 653 693 0.76 Zinc ribbon domain zf-C2H2_8 PF15909.5 98 ZNF225-201 - 706 1.8e-10 41.0 69.6 1 10 0.009 7 7.0 5.5 29 86 197 251 147 260 0.83 C2H2-type zinc ribbon zf-C2H2_8 PF15909.5 98 ZNF225-201 - 706 1.8e-10 41.0 69.6 2 10 0.0049 3.8 7.9 2.3 42 88 264 309 254 314 0.86 C2H2-type zinc ribbon zf-C2H2_8 PF15909.5 98 ZNF225-201 - 706 1.8e-10 41.0 69.6 3 10 1.9e-05 0.015 15.6 2.6 31 85 311 362 306 370 0.89 C2H2-type zinc ribbon zf-C2H2_8 PF15909.5 98 ZNF225-201 - 706 1.8e-10 41.0 69.6 4 10 0.005 3.9 7.8 0.5 38 87 374 420 364 429 0.82 C2H2-type zinc ribbon zf-C2H2_8 PF15909.5 98 ZNF225-201 - 706 1.8e-10 41.0 69.6 5 10 1.6e-05 0.012 15.9 1.5 37 90 457 507 436 511 0.85 C2H2-type zinc ribbon zf-C2H2_8 PF15909.5 98 ZNF225-201 - 706 1.8e-10 41.0 69.6 6 10 0.0015 1.2 9.5 0.8 53 88 499 533 497 539 0.85 C2H2-type zinc ribbon zf-C2H2_8 PF15909.5 98 ZNF225-201 - 706 1.8e-10 41.0 69.6 7 10 0.0074 5.8 7.3 1.3 36 82 512 555 507 567 0.59 C2H2-type zinc ribbon zf-C2H2_8 PF15909.5 98 ZNF225-201 - 706 1.8e-10 41.0 69.6 8 10 4.7e-05 0.037 14.3 2.2 40 89 570 618 554 622 0.84 C2H2-type zinc ribbon zf-C2H2_8 PF15909.5 98 ZNF225-201 - 706 1.8e-10 41.0 69.6 9 10 0.12 92 3.4 2.9 34 73 622 658 609 673 0.66 C2H2-type zinc ribbon zf-C2H2_8 PF15909.5 98 ZNF225-201 - 706 1.8e-10 41.0 69.6 10 10 4.5 3.5e+03 -1.6 0.1 65 79 678 692 668 700 0.81 C2H2-type zinc ribbon zf-trcl PF13451.6 48 ZNF225-201 - 706 4.3e-09 36.1 97.7 1 16 0.023 18 5.3 0.9 3 18 174 189 172 190 0.86 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF225-201 - 706 4.3e-09 36.1 97.7 2 16 0.17 1.4e+02 2.5 0.1 3 14 202 213 201 221 0.85 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF225-201 - 706 4.3e-09 36.1 97.7 3 16 0.057 44 4.1 0.2 3 14 230 241 228 242 0.88 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF225-201 - 706 4.3e-09 36.1 97.7 4 16 0.027 21 5.1 4.2 3 41 258 295 258 302 0.78 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF225-201 - 706 4.3e-09 36.1 97.7 5 16 0.21 1.6e+02 2.3 0.1 3 14 314 325 309 326 0.70 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF225-201 - 706 4.3e-09 36.1 97.7 6 16 0.004 3.1 7.8 0.1 3 16 342 355 340 361 0.89 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF225-201 - 706 4.3e-09 36.1 97.7 7 16 0.0021 1.6 8.6 0.0 3 18 370 385 368 387 0.88 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF225-201 - 706 4.3e-09 36.1 97.7 8 16 0.0015 1.2 9.1 4.7 4 44 399 438 397 441 0.83 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF225-201 - 706 4.3e-09 36.1 97.7 9 16 0.0057 4.5 7.3 0.4 3 17 454 468 452 470 0.88 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF225-201 - 706 4.3e-09 36.1 97.7 10 16 0.0078 6.1 6.8 7.0 3 42 482 520 480 526 0.85 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF225-201 - 706 4.3e-09 36.1 97.7 11 16 0.035 27 4.7 5.2 3 39 510 545 508 548 0.78 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF225-201 - 706 4.3e-09 36.1 97.7 12 16 0.059 46 4.0 0.1 4 14 567 577 565 578 0.86 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF225-201 - 706 4.3e-09 36.1 97.7 13 16 0.012 9.3 6.2 0.2 3 15 594 606 592 616 0.89 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF225-201 - 706 4.3e-09 36.1 97.7 14 16 0.0065 5 7.1 0.1 3 17 622 636 620 639 0.88 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF225-201 - 706 4.3e-09 36.1 97.7 15 16 0.028 22 5.1 0.3 3 17 650 664 648 671 0.83 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF225-201 - 706 4.3e-09 36.1 97.7 16 16 0.11 85 3.2 0.5 3 12 678 687 676 690 0.86 Probable zinc-ribbon domain XPA_N PF01286.18 32 ZNF225-201 - 706 1.3e-08 34.8 107.6 1 18 0.0038 3 8.0 1.6 3 14 177 188 175 191 0.89 XPA protein N-terminal XPA_N PF01286.18 32 ZNF225-201 - 706 1.3e-08 34.8 107.6 2 18 0.01 8 6.6 0.1 3 14 205 216 204 221 0.89 XPA protein N-terminal XPA_N PF01286.18 32 ZNF225-201 - 706 1.3e-08 34.8 107.6 3 18 0.081 63 3.7 0.5 3 12 233 242 231 243 0.89 XPA protein N-terminal XPA_N PF01286.18 32 ZNF225-201 - 706 1.3e-08 34.8 107.6 4 18 0.0019 1.5 9.0 0.0 3 19 261 278 259 281 0.87 XPA protein N-terminal XPA_N PF01286.18 32 ZNF225-201 - 706 1.3e-08 34.8 107.6 5 18 0.14 1.1e+02 2.9 0.1 3 12 317 326 316 331 0.89 XPA protein N-terminal XPA_N PF01286.18 32 ZNF225-201 - 706 1.3e-08 34.8 107.6 6 18 0.0098 7.6 6.7 0.2 3 11 345 353 343 355 0.90 XPA protein N-terminal XPA_N PF01286.18 32 ZNF225-201 - 706 1.3e-08 34.8 107.6 7 18 0.019 15 5.7 0.1 3 11 373 381 371 384 0.90 XPA protein N-terminal XPA_N PF01286.18 32 ZNF225-201 - 706 1.3e-08 34.8 107.6 8 18 0.023 18 5.5 0.5 3 11 401 409 400 412 0.90 XPA protein N-terminal XPA_N PF01286.18 32 ZNF225-201 - 706 1.3e-08 34.8 107.6 9 18 0.18 1.4e+02 2.6 0.2 3 9 429 435 427 438 0.86 XPA protein N-terminal XPA_N PF01286.18 32 ZNF225-201 - 706 1.3e-08 34.8 107.6 10 18 0.013 9.7 6.3 0.4 3 12 457 466 455 474 0.81 XPA protein N-terminal XPA_N PF01286.18 32 ZNF225-201 - 706 1.3e-08 34.8 107.6 11 18 0.001 0.79 9.8 0.1 3 19 485 502 483 503 0.82 XPA protein N-terminal XPA_N PF01286.18 32 ZNF225-201 - 706 1.3e-08 34.8 107.6 12 18 0.0017 1.3 9.1 0.3 3 18 513 529 511 530 0.78 XPA protein N-terminal XPA_N PF01286.18 32 ZNF225-201 - 706 1.3e-08 34.8 107.6 13 18 0.011 8.7 6.5 0.4 3 12 541 550 539 554 0.88 XPA protein N-terminal XPA_N PF01286.18 32 ZNF225-201 - 706 1.3e-08 34.8 107.6 14 18 0.013 9.9 6.3 0.2 3 12 569 578 567 581 0.88 XPA protein N-terminal XPA_N PF01286.18 32 ZNF225-201 - 706 1.3e-08 34.8 107.6 15 18 0.0041 3.2 7.9 0.3 3 12 597 606 595 614 0.81 XPA protein N-terminal XPA_N PF01286.18 32 ZNF225-201 - 706 1.3e-08 34.8 107.6 16 18 0.035 27 4.9 0.1 3 11 625 633 623 635 0.90 XPA protein N-terminal XPA_N PF01286.18 32 ZNF225-201 - 706 1.3e-08 34.8 107.6 17 18 0.31 2.5e+02 1.8 1.1 3 14 653 664 652 668 0.83 XPA protein N-terminal XPA_N PF01286.18 32 ZNF225-201 - 706 1.3e-08 34.8 107.6 18 18 0.22 1.7e+02 2.3 0.3 3 10 681 688 679 691 0.85 XPA protein N-terminal # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF225-201.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF225-201.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF225-201.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF225-201.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF225-201.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:01:54 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF225-202.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF225-202.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF225-202.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF225-202.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF225-202.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:01:54 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF225-203.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF225-203.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF225-203.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF225-203.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF225-203.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:01:55 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZNF225-204 - 706 3.2e-124 400.3 135.5 1 19 0.00037 0.29 11.7 0.1 4 24 165 185 163 185 0.88 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF225-204 - 706 3.2e-124 400.3 135.5 2 19 2.4e-09 1.9e-06 28.0 0.0 1 25 190 214 190 215 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF225-204 - 706 3.2e-124 400.3 135.5 3 19 1.4e-10 1.1e-07 32.0 0.8 1 25 218 242 218 243 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF225-204 - 706 3.2e-124 400.3 135.5 4 19 3.3e-07 0.00026 21.3 1.7 2 26 247 271 246 271 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF225-204 - 706 3.2e-124 400.3 135.5 5 19 3e-10 2.4e-07 30.9 1.5 2 25 275 298 274 299 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF225-204 - 706 3.2e-124 400.3 135.5 6 19 4.4e-09 3.5e-06 27.2 0.4 1 24 302 325 302 326 0.97 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF225-204 - 706 3.2e-124 400.3 135.5 7 19 8.2e-10 6.4e-07 29.5 0.6 1 24 330 353 330 355 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF225-204 - 706 3.2e-124 400.3 135.5 8 19 2.3e-10 1.8e-07 31.3 0.9 1 24 358 381 358 382 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF225-204 - 706 3.2e-124 400.3 135.5 9 19 1e-09 7.9e-07 29.2 0.3 1 24 386 409 386 411 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF225-204 - 706 3.2e-124 400.3 135.5 10 19 2.1e-07 0.00016 21.9 1.6 4 26 417 439 416 439 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF225-204 - 706 3.2e-124 400.3 135.5 11 19 3.1e-10 2.4e-07 30.9 0.5 2 24 443 465 442 466 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF225-204 - 706 3.2e-124 400.3 135.5 12 19 6.4e-10 5e-07 29.9 0.6 4 25 473 494 471 495 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF225-204 - 706 3.2e-124 400.3 135.5 13 19 6.2e-10 4.9e-07 29.9 1.6 2 25 499 522 498 523 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF225-204 - 706 3.2e-124 400.3 135.5 14 19 2.2e-10 1.7e-07 31.4 0.7 2 26 527 551 526 551 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF225-204 - 706 3.2e-124 400.3 135.5 15 19 2.8e-11 2.2e-08 34.1 0.4 1 25 554 578 554 579 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF225-204 - 706 3.2e-124 400.3 135.5 16 19 4.7e-07 0.00036 20.8 1.4 5 25 586 606 584 607 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF225-204 - 706 3.2e-124 400.3 135.5 17 19 4.9e-10 3.8e-07 30.2 3.6 4 24 613 633 611 634 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF225-204 - 706 3.2e-124 400.3 135.5 18 19 5.5e-05 0.043 14.3 0.2 5 23 642 660 640 663 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF225-204 - 706 3.2e-124 400.3 135.5 19 19 0.022 17 6.1 0.2 7 26 672 691 671 691 0.85 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZNF225-204 - 706 7.7e-80 259.1 152.8 1 20 0.13 1e+02 3.6 0.0 5 21 152 168 150 169 0.88 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF225-204 - 706 7.7e-80 259.1 152.8 2 20 1e-07 7.9e-05 22.9 3.5 1 23 176 198 176 198 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF225-204 - 706 7.7e-80 259.1 152.8 3 20 1.1e-08 9e-06 25.9 1.0 1 23 204 226 204 226 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF225-204 - 706 7.7e-80 259.1 152.8 4 20 2.3e-07 0.00018 21.8 1.0 1 23 232 254 232 254 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF225-204 - 706 7.7e-80 259.1 152.8 5 20 1.7e-06 0.0013 19.1 1.4 1 23 260 282 260 282 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF225-204 - 706 7.7e-80 259.1 152.8 6 20 4.6e-05 0.036 14.5 3.5 1 23 288 310 288 310 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF225-204 - 706 7.7e-80 259.1 152.8 7 20 1.2e-06 0.00094 19.5 0.6 1 23 316 338 316 338 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF225-204 - 706 7.7e-80 259.1 152.8 8 20 2.4e-06 0.0019 18.6 0.8 1 23 344 366 344 366 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF225-204 - 706 7.7e-80 259.1 152.8 9 20 1.4e-06 0.0011 19.3 0.3 1 23 372 394 372 394 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF225-204 - 706 7.7e-80 259.1 152.8 10 20 4.4e-06 0.0034 17.7 1.3 1 23 400 422 400 422 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF225-204 - 706 7.7e-80 259.1 152.8 11 20 0.00014 0.11 13.0 0.7 1 23 428 450 428 450 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF225-204 - 706 7.7e-80 259.1 152.8 12 20 2.2e-05 0.017 15.5 0.9 1 23 456 478 456 478 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF225-204 - 706 7.7e-80 259.1 152.8 13 20 3.1e-08 2.4e-05 24.5 1.9 1 23 484 506 484 506 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF225-204 - 706 7.7e-80 259.1 152.8 14 20 1.9e-08 1.5e-05 25.2 1.8 1 23 512 534 512 534 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF225-204 - 706 7.7e-80 259.1 152.8 15 20 1.4e-07 0.00011 22.5 0.6 1 23 540 562 540 562 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF225-204 - 706 7.7e-80 259.1 152.8 16 20 2.3e-07 0.00018 21.8 1.0 1 23 568 590 568 590 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF225-204 - 706 7.7e-80 259.1 152.8 17 20 6.9e-08 5.4e-05 23.4 2.4 1 23 596 618 596 618 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF225-204 - 706 7.7e-80 259.1 152.8 18 20 0.00073 0.57 10.7 2.4 1 23 624 646 624 646 0.87 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF225-204 - 706 7.7e-80 259.1 152.8 19 20 0.0062 4.9 7.8 0.4 2 17 653 668 652 669 0.90 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF225-204 - 706 7.7e-80 259.1 152.8 20 20 0.0013 0.99 10.0 0.3 2 16 681 695 680 697 0.90 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZNF225-204 - 706 7.9e-47 153.9 146.3 1 20 1.9 1.4e+03 0.6 0.1 6 20 153 167 151 170 0.81 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF225-204 - 706 7.9e-47 153.9 146.3 2 20 0.00011 0.082 13.8 3.0 1 23 176 198 176 199 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF225-204 - 706 7.9e-47 153.9 146.3 3 20 3.1e-05 0.024 15.4 0.7 1 23 204 226 204 227 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF225-204 - 706 7.9e-47 153.9 146.3 4 20 2.9e-06 0.0023 18.6 1.0 1 23 232 254 232 255 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF225-204 - 706 7.9e-47 153.9 146.3 5 20 0.0044 3.5 8.7 1.2 1 23 260 282 260 283 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF225-204 - 706 7.9e-47 153.9 146.3 6 20 8.5e-06 0.0067 17.2 2.5 1 23 288 310 288 311 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF225-204 - 706 7.9e-47 153.9 146.3 7 20 0.00034 0.27 12.2 0.5 1 23 316 338 316 339 0.91 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF225-204 - 706 7.9e-47 153.9 146.3 8 20 3.7e-05 0.029 15.2 0.5 1 23 344 366 344 367 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF225-204 - 706 7.9e-47 153.9 146.3 9 20 4.5e-05 0.035 14.9 0.5 1 23 372 394 372 395 0.90 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF225-204 - 706 7.9e-47 153.9 146.3 10 20 0.00052 0.41 11.6 1.1 1 23 400 422 400 423 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF225-204 - 706 7.9e-47 153.9 146.3 11 20 0.00048 0.37 11.7 0.5 1 23 428 450 428 451 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF225-204 - 706 7.9e-47 153.9 146.3 12 20 0.00091 0.71 10.9 1.2 1 23 456 478 456 479 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF225-204 - 706 7.9e-47 153.9 146.3 13 20 4.6e-06 0.0036 18.0 1.5 1 23 484 506 484 507 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF225-204 - 706 7.9e-47 153.9 146.3 14 20 7.6e-06 0.0059 17.3 1.5 1 23 512 534 512 535 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF225-204 - 706 7.9e-47 153.9 146.3 15 20 2.5e-05 0.019 15.7 0.5 1 23 540 562 540 563 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF225-204 - 706 7.9e-47 153.9 146.3 16 20 1.5e-05 0.012 16.4 0.5 1 23 568 590 568 591 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF225-204 - 706 7.9e-47 153.9 146.3 17 20 1.2e-05 0.0096 16.7 2.2 1 23 596 618 596 619 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF225-204 - 706 7.9e-47 153.9 146.3 18 20 0.0066 5.1 8.2 2.5 1 23 624 646 624 647 0.82 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF225-204 - 706 7.9e-47 153.9 146.3 19 20 2.4 1.9e+03 0.2 0.6 2 9 653 660 652 668 0.81 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF225-204 - 706 7.9e-47 153.9 146.3 20 20 0.07 55 5.0 0.1 2 15 681 694 680 697 0.84 C2H2-type zinc finger KRAB PF01352.27 42 ZNF225-204 - 706 5.8e-22 77.1 0.4 1 1 2.4e-24 1.8e-21 75.5 0.4 2 42 8 48 7 48 0.98 KRAB box zf-C2H2_6 PF13912.6 27 ZNF225-204 - 706 2.6e-20 71.9 131.8 1 19 1.2 9.1e+02 0.0 0.3 6 12 152 158 151 158 0.89 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF225-204 - 706 2.6e-20 71.9 131.8 2 19 6.9e-05 0.054 13.5 2.7 2 26 176 200 175 201 0.92 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF225-204 - 706 2.6e-20 71.9 131.8 3 19 0.00028 0.22 11.6 0.2 2 12 204 214 203 215 0.92 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF225-204 - 706 2.6e-20 71.9 131.8 4 19 0.015 12 6.0 1.2 2 22 232 252 232 256 0.80 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF225-204 - 706 2.6e-20 71.9 131.8 5 19 0.21 1.6e+02 2.4 0.6 2 11 260 269 260 269 0.96 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF225-204 - 706 2.6e-20 71.9 131.8 6 19 5.8e-05 0.045 13.8 1.1 2 26 288 312 288 313 0.90 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF225-204 - 706 2.6e-20 71.9 131.8 7 19 4.5e-05 0.035 14.1 0.5 2 21 316 335 316 339 0.91 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF225-204 - 706 2.6e-20 71.9 131.8 8 19 8.3e-05 0.065 13.3 0.5 1 24 343 366 343 369 0.90 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF225-204 - 706 2.6e-20 71.9 131.8 9 19 0.00027 0.21 11.7 0.3 2 12 372 382 372 383 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF225-204 - 706 2.6e-20 71.9 131.8 10 19 0.035 27 4.9 1.0 2 11 400 409 399 411 0.89 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF225-204 - 706 2.6e-20 71.9 131.8 11 19 0.05 39 4.4 0.2 2 12 428 438 428 452 0.87 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF225-204 - 706 2.6e-20 71.9 131.8 12 19 0.00049 0.38 10.8 0.8 2 12 456 466 456 466 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF225-204 - 706 2.6e-20 71.9 131.8 13 19 0.0026 2.1 8.5 1.4 2 24 484 506 484 509 0.84 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF225-204 - 706 2.6e-20 71.9 131.8 14 19 0.0059 4.6 7.3 1.2 2 12 512 522 512 535 0.78 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF225-204 - 706 2.6e-20 71.9 131.8 15 19 0.00062 0.49 10.5 0.7 2 24 540 562 540 565 0.87 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF225-204 - 706 2.6e-20 71.9 131.8 16 19 9.3e-05 0.072 13.1 0.4 2 13 568 579 568 592 0.80 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF225-204 - 706 2.6e-20 71.9 131.8 17 19 0.0096 7.5 6.7 1.0 2 11 596 605 596 610 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF225-204 - 706 2.6e-20 71.9 131.8 18 19 0.03 24 5.1 1.8 2 12 624 634 624 634 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF225-204 - 706 2.6e-20 71.9 131.8 19 19 3.5 2.7e+03 -1.5 0.4 3 12 681 690 681 691 0.85 C2H2-type zinc finger zf-C2H2_jaz PF12171.8 27 ZNF225-204 - 706 8e-18 64.2 90.2 1 19 0.013 10 6.5 0.1 6 21 152 167 152 168 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF225-204 - 706 8e-18 64.2 90.2 2 19 0.7 5.4e+02 1.0 0.6 2 11 176 185 175 196 0.79 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF225-204 - 706 8e-18 64.2 90.2 3 19 0.005 3.9 7.9 0.7 2 22 204 224 203 224 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF225-204 - 706 8e-18 64.2 90.2 4 19 0.042 33 4.9 0.1 2 13 232 243 231 252 0.84 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF225-204 - 706 8e-18 64.2 90.2 5 19 0.00069 0.54 10.6 0.5 2 22 260 280 259 280 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF225-204 - 706 8e-18 64.2 90.2 6 19 0.026 20 5.6 0.8 2 20 288 306 287 306 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF225-204 - 706 8e-18 64.2 90.2 7 19 0.065 50 4.3 0.0 2 20 316 334 315 335 0.79 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF225-204 - 706 8e-18 64.2 90.2 8 19 0.12 97 3.4 1.0 2 12 344 354 343 363 0.81 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF225-204 - 706 8e-18 64.2 90.2 9 19 0.046 36 4.8 0.0 2 12 372 382 371 392 0.80 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF225-204 - 706 8e-18 64.2 90.2 10 19 0.011 8.7 6.8 0.5 2 16 400 414 399 420 0.84 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF225-204 - 706 8e-18 64.2 90.2 11 19 0.0019 1.5 9.2 0.0 2 22 428 448 427 448 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF225-204 - 706 8e-18 64.2 90.2 12 19 0.07 54 4.2 0.4 2 12 456 466 455 476 0.80 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF225-204 - 706 8e-18 64.2 90.2 13 19 0.025 20 5.6 0.2 2 20 484 502 483 504 0.82 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF225-204 - 706 8e-18 64.2 90.2 14 19 0.034 27 5.2 0.2 2 20 512 530 511 532 0.79 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF225-204 - 706 8e-18 64.2 90.2 15 19 8.2e-05 0.064 13.6 0.2 2 22 540 560 539 560 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF225-204 - 706 8e-18 64.2 90.2 16 19 0.00012 0.096 13.0 0.1 2 22 568 588 567 588 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF225-204 - 706 8e-18 64.2 90.2 17 19 0.00034 0.27 11.6 0.4 2 22 596 616 595 616 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF225-204 - 706 8e-18 64.2 90.2 18 19 0.76 5.9e+02 0.9 0.2 2 21 624 643 623 644 0.85 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF225-204 - 706 8e-18 64.2 90.2 19 19 1 7.9e+02 0.5 0.1 3 18 681 696 680 697 0.83 Zinc-finger double-stranded RNA-binding zf_UBZ PF18439.1 32 ZNF225-204 - 706 1e-14 53.8 101.2 1 19 0.013 10 5.8 1.0 2 12 175 185 174 190 0.89 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF225-204 - 706 1e-14 53.8 101.2 2 19 0.026 21 4.8 0.2 3 17 204 219 202 223 0.78 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF225-204 - 706 1e-14 53.8 101.2 3 19 0.037 29 4.4 0.3 3 13 232 242 230 244 0.85 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF225-204 - 706 1e-14 53.8 101.2 4 19 9.9e-05 0.077 12.6 1.8 3 21 260 279 258 279 0.93 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF225-204 - 706 1e-14 53.8 101.2 5 19 1.5 1.1e+03 -0.7 0.5 3 14 288 299 286 307 0.78 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF225-204 - 706 1e-14 53.8 101.2 6 19 0.025 20 4.9 0.0 3 20 316 334 314 335 0.77 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF225-204 - 706 1e-14 53.8 101.2 7 19 0.0053 4.2 7.1 0.2 2 12 343 353 342 362 0.89 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF225-204 - 706 1e-14 53.8 101.2 8 19 0.03 23 4.7 0.2 3 12 372 381 370 383 0.89 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF225-204 - 706 1e-14 53.8 101.2 9 19 0.00082 0.64 9.7 0.2 1 21 398 419 398 419 0.88 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF225-204 - 706 1e-14 53.8 101.2 10 19 0.04 31 4.3 0.1 3 11 428 436 426 447 0.78 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF225-204 - 706 1e-14 53.8 101.2 11 19 0.036 28 4.4 0.3 3 12 456 465 454 466 0.89 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF225-204 - 706 1e-14 53.8 101.2 12 19 0.0022 1.7 8.3 0.2 3 17 484 499 482 503 0.80 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF225-204 - 706 1e-14 53.8 101.2 13 19 0.0014 1.1 8.9 0.2 3 20 512 530 510 531 0.85 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF225-204 - 706 1e-14 53.8 101.2 14 19 0.0099 7.7 6.2 0.1 3 15 540 552 538 559 0.75 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF225-204 - 706 1e-14 53.8 101.2 15 19 0.0044 3.5 7.3 0.1 3 15 568 580 566 587 0.80 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF225-204 - 706 1e-14 53.8 101.2 16 19 0.00028 0.22 11.1 1.0 3 21 596 615 594 615 0.92 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF225-204 - 706 1e-14 53.8 101.2 17 19 0.0069 5.4 6.7 0.1 3 12 624 633 622 643 0.84 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF225-204 - 706 1e-14 53.8 101.2 18 19 0.02 16 5.2 0.8 4 14 653 663 650 666 0.84 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF225-204 - 706 1e-14 53.8 101.2 19 19 0.12 95 2.7 0.5 4 11 681 688 678 692 0.82 Ubiquitin-Binding Zinc Finger Zn-ribbon_8 PF09723.10 40 ZNF225-204 - 706 2.2e-12 46.9 113.5 1 17 0.14 1.1e+02 3.0 0.8 17 34 168 183 150 187 0.55 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF225-204 - 706 2.2e-12 46.9 113.5 2 17 0.00012 0.093 12.9 3.2 6 38 204 243 203 245 0.87 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF225-204 - 706 2.2e-12 46.9 113.5 3 17 0.00014 0.11 12.6 1.5 6 34 232 267 231 271 0.89 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF225-204 - 706 2.2e-12 46.9 113.5 4 17 0.48 3.8e+02 1.3 3.4 8 32 262 293 247 300 0.78 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF225-204 - 706 2.2e-12 46.9 113.5 5 17 1.8 1.4e+03 -0.5 5.3 6 14 316 324 287 325 0.51 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF225-204 - 706 2.2e-12 46.9 113.5 6 17 0.062 48 4.2 0.3 6 15 316 325 315 335 0.88 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF225-204 - 706 2.2e-12 46.9 113.5 7 17 0.00037 0.29 11.3 5.9 6 35 344 380 343 384 0.84 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF225-204 - 706 2.2e-12 46.9 113.5 8 17 0.0066 5.2 7.3 5.1 6 34 372 407 370 408 0.84 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF225-204 - 706 2.2e-12 46.9 113.5 9 17 0.00062 0.48 10.6 6.1 6 39 400 440 399 441 0.86 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF225-204 - 706 2.2e-12 46.9 113.5 10 17 0.00059 0.46 10.6 5.2 6 34 428 463 426 466 0.91 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF225-204 - 706 2.2e-12 46.9 113.5 11 17 0.01 7.9 6.7 7.4 6 36 456 493 455 495 0.88 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF225-204 - 706 2.2e-12 46.9 113.5 12 17 0.004 3.1 8.0 8.4 6 36 484 521 483 523 0.80 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF225-204 - 706 2.2e-12 46.9 113.5 13 17 0.007 5.5 7.2 1.1 6 17 512 523 511 532 0.86 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF225-204 - 706 2.2e-12 46.9 113.5 14 17 2.1e-05 0.016 15.3 3.5 6 38 540 579 539 581 0.90 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF225-204 - 706 2.2e-12 46.9 113.5 15 17 0.0002 0.16 12.1 6.5 6 35 596 632 595 634 0.88 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF225-204 - 706 2.2e-12 46.9 113.5 16 17 7.7e-06 0.006 16.7 0.7 6 34 624 659 623 663 0.89 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF225-204 - 706 2.2e-12 46.9 113.5 17 17 0.063 49 4.2 6.2 7 39 653 692 653 693 0.76 Zinc ribbon domain zf-C2H2_8 PF15909.5 98 ZNF225-204 - 706 1.8e-10 41.0 69.6 1 10 0.009 7 7.0 5.5 29 86 197 251 147 260 0.83 C2H2-type zinc ribbon zf-C2H2_8 PF15909.5 98 ZNF225-204 - 706 1.8e-10 41.0 69.6 2 10 0.0049 3.8 7.9 2.3 42 88 264 309 254 314 0.86 C2H2-type zinc ribbon zf-C2H2_8 PF15909.5 98 ZNF225-204 - 706 1.8e-10 41.0 69.6 3 10 1.9e-05 0.015 15.6 2.6 31 85 311 362 306 370 0.89 C2H2-type zinc ribbon zf-C2H2_8 PF15909.5 98 ZNF225-204 - 706 1.8e-10 41.0 69.6 4 10 0.005 3.9 7.8 0.5 38 87 374 420 364 429 0.82 C2H2-type zinc ribbon zf-C2H2_8 PF15909.5 98 ZNF225-204 - 706 1.8e-10 41.0 69.6 5 10 1.6e-05 0.012 15.9 1.5 37 90 457 507 436 511 0.85 C2H2-type zinc ribbon zf-C2H2_8 PF15909.5 98 ZNF225-204 - 706 1.8e-10 41.0 69.6 6 10 0.0015 1.2 9.5 0.8 53 88 499 533 497 539 0.85 C2H2-type zinc ribbon zf-C2H2_8 PF15909.5 98 ZNF225-204 - 706 1.8e-10 41.0 69.6 7 10 0.0074 5.8 7.3 1.3 36 82 512 555 507 567 0.59 C2H2-type zinc ribbon zf-C2H2_8 PF15909.5 98 ZNF225-204 - 706 1.8e-10 41.0 69.6 8 10 4.7e-05 0.037 14.3 2.2 40 89 570 618 554 622 0.84 C2H2-type zinc ribbon zf-C2H2_8 PF15909.5 98 ZNF225-204 - 706 1.8e-10 41.0 69.6 9 10 0.12 92 3.4 2.9 34 73 622 658 609 673 0.66 C2H2-type zinc ribbon zf-C2H2_8 PF15909.5 98 ZNF225-204 - 706 1.8e-10 41.0 69.6 10 10 4.5 3.5e+03 -1.6 0.1 65 79 678 692 668 700 0.81 C2H2-type zinc ribbon zf-trcl PF13451.6 48 ZNF225-204 - 706 4.3e-09 36.1 97.7 1 16 0.023 18 5.3 0.9 3 18 174 189 172 190 0.86 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF225-204 - 706 4.3e-09 36.1 97.7 2 16 0.17 1.4e+02 2.5 0.1 3 14 202 213 201 221 0.85 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF225-204 - 706 4.3e-09 36.1 97.7 3 16 0.057 44 4.1 0.2 3 14 230 241 228 242 0.88 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF225-204 - 706 4.3e-09 36.1 97.7 4 16 0.027 21 5.1 4.2 3 41 258 295 258 302 0.78 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF225-204 - 706 4.3e-09 36.1 97.7 5 16 0.21 1.6e+02 2.3 0.1 3 14 314 325 309 326 0.70 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF225-204 - 706 4.3e-09 36.1 97.7 6 16 0.004 3.1 7.8 0.1 3 16 342 355 340 361 0.89 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF225-204 - 706 4.3e-09 36.1 97.7 7 16 0.0021 1.6 8.6 0.0 3 18 370 385 368 387 0.88 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF225-204 - 706 4.3e-09 36.1 97.7 8 16 0.0015 1.2 9.1 4.7 4 44 399 438 397 441 0.83 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF225-204 - 706 4.3e-09 36.1 97.7 9 16 0.0057 4.5 7.3 0.4 3 17 454 468 452 470 0.88 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF225-204 - 706 4.3e-09 36.1 97.7 10 16 0.0078 6.1 6.8 7.0 3 42 482 520 480 526 0.85 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF225-204 - 706 4.3e-09 36.1 97.7 11 16 0.035 27 4.7 5.2 3 39 510 545 508 548 0.78 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF225-204 - 706 4.3e-09 36.1 97.7 12 16 0.059 46 4.0 0.1 4 14 567 577 565 578 0.86 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF225-204 - 706 4.3e-09 36.1 97.7 13 16 0.012 9.3 6.2 0.2 3 15 594 606 592 616 0.89 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF225-204 - 706 4.3e-09 36.1 97.7 14 16 0.0065 5 7.1 0.1 3 17 622 636 620 639 0.88 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF225-204 - 706 4.3e-09 36.1 97.7 15 16 0.028 22 5.1 0.3 3 17 650 664 648 671 0.83 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF225-204 - 706 4.3e-09 36.1 97.7 16 16 0.11 85 3.2 0.5 3 12 678 687 676 690 0.86 Probable zinc-ribbon domain XPA_N PF01286.18 32 ZNF225-204 - 706 1.3e-08 34.8 107.6 1 18 0.0038 3 8.0 1.6 3 14 177 188 175 191 0.89 XPA protein N-terminal XPA_N PF01286.18 32 ZNF225-204 - 706 1.3e-08 34.8 107.6 2 18 0.01 8 6.6 0.1 3 14 205 216 204 221 0.89 XPA protein N-terminal XPA_N PF01286.18 32 ZNF225-204 - 706 1.3e-08 34.8 107.6 3 18 0.081 63 3.7 0.5 3 12 233 242 231 243 0.89 XPA protein N-terminal XPA_N PF01286.18 32 ZNF225-204 - 706 1.3e-08 34.8 107.6 4 18 0.0019 1.5 9.0 0.0 3 19 261 278 259 281 0.87 XPA protein N-terminal XPA_N PF01286.18 32 ZNF225-204 - 706 1.3e-08 34.8 107.6 5 18 0.14 1.1e+02 2.9 0.1 3 12 317 326 316 331 0.89 XPA protein N-terminal XPA_N PF01286.18 32 ZNF225-204 - 706 1.3e-08 34.8 107.6 6 18 0.0098 7.6 6.7 0.2 3 11 345 353 343 355 0.90 XPA protein N-terminal XPA_N PF01286.18 32 ZNF225-204 - 706 1.3e-08 34.8 107.6 7 18 0.019 15 5.7 0.1 3 11 373 381 371 384 0.90 XPA protein N-terminal XPA_N PF01286.18 32 ZNF225-204 - 706 1.3e-08 34.8 107.6 8 18 0.023 18 5.5 0.5 3 11 401 409 400 412 0.90 XPA protein N-terminal XPA_N PF01286.18 32 ZNF225-204 - 706 1.3e-08 34.8 107.6 9 18 0.18 1.4e+02 2.6 0.2 3 9 429 435 427 438 0.86 XPA protein N-terminal XPA_N PF01286.18 32 ZNF225-204 - 706 1.3e-08 34.8 107.6 10 18 0.013 9.7 6.3 0.4 3 12 457 466 455 474 0.81 XPA protein N-terminal XPA_N PF01286.18 32 ZNF225-204 - 706 1.3e-08 34.8 107.6 11 18 0.001 0.79 9.8 0.1 3 19 485 502 483 503 0.82 XPA protein N-terminal XPA_N PF01286.18 32 ZNF225-204 - 706 1.3e-08 34.8 107.6 12 18 0.0017 1.3 9.1 0.3 3 18 513 529 511 530 0.78 XPA protein N-terminal XPA_N PF01286.18 32 ZNF225-204 - 706 1.3e-08 34.8 107.6 13 18 0.011 8.7 6.5 0.4 3 12 541 550 539 554 0.88 XPA protein N-terminal XPA_N PF01286.18 32 ZNF225-204 - 706 1.3e-08 34.8 107.6 14 18 0.013 9.9 6.3 0.2 3 12 569 578 567 581 0.88 XPA protein N-terminal XPA_N PF01286.18 32 ZNF225-204 - 706 1.3e-08 34.8 107.6 15 18 0.0041 3.2 7.9 0.3 3 12 597 606 595 614 0.81 XPA protein N-terminal XPA_N PF01286.18 32 ZNF225-204 - 706 1.3e-08 34.8 107.6 16 18 0.035 27 4.9 0.1 3 11 625 633 623 635 0.90 XPA protein N-terminal XPA_N PF01286.18 32 ZNF225-204 - 706 1.3e-08 34.8 107.6 17 18 0.31 2.5e+02 1.8 1.1 3 14 653 664 652 668 0.83 XPA protein N-terminal XPA_N PF01286.18 32 ZNF225-204 - 706 1.3e-08 34.8 107.6 18 18 0.22 1.7e+02 2.3 0.3 3 10 681 688 679 691 0.85 XPA protein N-terminal # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF225-204.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF225-204.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF225-204.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF225-204.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF225-204.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:01:55 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF225-205.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF225-205.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF225-205.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF225-205.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF225-205.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:01:56 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZNF225-206 - 623 2.1e-125 404.1 135.5 1 19 0.0003 0.25 11.9 0.1 4 24 82 102 80 102 0.88 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF225-206 - 623 2.1e-125 404.1 135.5 2 19 2e-09 1.6e-06 28.2 0.0 1 25 107 131 107 132 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF225-206 - 623 2.1e-125 404.1 135.5 3 19 1.1e-10 9.1e-08 32.2 0.8 1 25 135 159 135 160 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF225-206 - 623 2.1e-125 404.1 135.5 4 19 2.7e-07 0.00022 21.5 1.7 2 26 164 188 163 188 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF225-206 - 623 2.1e-125 404.1 135.5 5 19 2.5e-10 2e-07 31.1 1.5 2 25 192 215 191 216 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF225-206 - 623 2.1e-125 404.1 135.5 6 19 3.7e-09 3e-06 27.4 0.4 1 24 219 242 219 243 0.97 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF225-206 - 623 2.1e-125 404.1 135.5 7 19 6.8e-10 5.5e-07 29.7 0.6 1 24 247 270 247 272 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF225-206 - 623 2.1e-125 404.1 135.5 8 19 1.9e-10 1.6e-07 31.5 0.9 1 24 275 298 275 299 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF225-206 - 623 2.1e-125 404.1 135.5 9 19 8.4e-10 6.8e-07 29.4 0.3 1 24 303 326 303 328 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF225-206 - 623 2.1e-125 404.1 135.5 10 19 1.7e-07 0.00014 22.1 1.6 4 26 334 356 333 356 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF225-206 - 623 2.1e-125 404.1 135.5 11 19 2.6e-10 2.1e-07 31.1 0.5 2 24 360 382 359 383 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF225-206 - 623 2.1e-125 404.1 135.5 12 19 5.3e-10 4.3e-07 30.1 0.6 4 25 390 411 388 412 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF225-206 - 623 2.1e-125 404.1 135.5 13 19 5.2e-10 4.2e-07 30.1 1.6 2 25 416 439 415 440 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF225-206 - 623 2.1e-125 404.1 135.5 14 19 1.8e-10 1.4e-07 31.6 0.7 2 26 444 468 443 468 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF225-206 - 623 2.1e-125 404.1 135.5 15 19 2.4e-11 1.9e-08 34.3 0.4 1 25 471 495 471 496 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF225-206 - 623 2.1e-125 404.1 135.5 16 19 3.9e-07 0.00031 21.0 1.4 5 25 503 523 501 524 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF225-206 - 623 2.1e-125 404.1 135.5 17 19 4e-10 3.3e-07 30.4 3.6 4 24 530 550 528 551 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF225-206 - 623 2.1e-125 404.1 135.5 18 19 4.6e-05 0.037 14.5 0.2 5 23 559 577 557 580 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF225-206 - 623 2.1e-125 404.1 135.5 19 19 0.018 15 6.3 0.2 7 26 589 608 588 608 0.85 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZNF225-206 - 623 4.7e-81 263.0 152.8 1 20 0.11 89 3.8 0.0 5 21 69 85 67 86 0.88 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF225-206 - 623 4.7e-81 263.0 152.8 2 20 8.3e-08 6.8e-05 23.1 3.5 1 23 93 115 93 115 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF225-206 - 623 4.7e-81 263.0 152.8 3 20 9.5e-09 7.7e-06 26.1 1.0 1 23 121 143 121 143 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF225-206 - 623 4.7e-81 263.0 152.8 4 20 1.9e-07 0.00015 22.0 1.0 1 23 149 171 149 171 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF225-206 - 623 4.7e-81 263.0 152.8 5 20 1.4e-06 0.0011 19.3 1.4 1 23 177 199 177 199 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF225-206 - 623 4.7e-81 263.0 152.8 6 20 3.8e-05 0.031 14.7 3.5 1 23 205 227 205 227 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF225-206 - 623 4.7e-81 263.0 152.8 7 20 1e-06 0.00081 19.7 0.6 1 23 233 255 233 255 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF225-206 - 623 4.7e-81 263.0 152.8 8 20 2e-06 0.0016 18.8 0.8 1 23 261 283 261 283 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF225-206 - 623 4.7e-81 263.0 152.8 9 20 1.2e-06 0.00098 19.5 0.3 1 23 289 311 289 311 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF225-206 - 623 4.7e-81 263.0 152.8 10 20 3.6e-06 0.003 17.9 1.3 1 23 317 339 317 339 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF225-206 - 623 4.7e-81 263.0 152.8 11 20 0.00012 0.095 13.2 0.7 1 23 345 367 345 367 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF225-206 - 623 4.7e-81 263.0 152.8 12 20 1.8e-05 0.015 15.7 0.9 1 23 373 395 373 395 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF225-206 - 623 4.7e-81 263.0 152.8 13 20 2.6e-08 2.1e-05 24.7 1.9 1 23 401 423 401 423 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF225-206 - 623 4.7e-81 263.0 152.8 14 20 1.6e-08 1.3e-05 25.4 1.8 1 23 429 451 429 451 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF225-206 - 623 4.7e-81 263.0 152.8 15 20 1.1e-07 9.3e-05 22.7 0.6 1 23 457 479 457 479 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF225-206 - 623 4.7e-81 263.0 152.8 16 20 1.9e-07 0.00016 22.0 1.0 1 23 485 507 485 507 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF225-206 - 623 4.7e-81 263.0 152.8 17 20 5.7e-08 4.6e-05 23.6 2.4 1 23 513 535 513 535 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF225-206 - 623 4.7e-81 263.0 152.8 18 20 0.00061 0.5 10.9 2.4 1 23 541 563 541 563 0.88 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF225-206 - 623 4.7e-81 263.0 152.8 19 20 0.0052 4.2 8.0 0.4 2 17 570 585 569 586 0.90 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF225-206 - 623 4.7e-81 263.0 152.8 20 20 0.0011 0.86 10.2 0.3 2 16 598 612 597 614 0.90 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZNF225-206 - 623 5e-48 157.6 146.3 1 20 1.5 1.3e+03 0.8 0.1 6 20 70 84 68 87 0.81 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF225-206 - 623 5e-48 157.6 146.3 2 20 8.7e-05 0.071 14.0 3.0 1 23 93 115 93 116 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF225-206 - 623 5e-48 157.6 146.3 3 20 2.5e-05 0.021 15.6 0.7 1 23 121 143 121 144 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF225-206 - 623 5e-48 157.6 146.3 4 20 2.4e-06 0.0019 18.8 1.0 1 23 149 171 149 172 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF225-206 - 623 5e-48 157.6 146.3 5 20 0.0037 3 8.9 1.2 1 23 177 199 177 200 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF225-206 - 623 5e-48 157.6 146.3 6 20 7.1e-06 0.0057 17.4 2.5 1 23 205 227 205 228 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF225-206 - 623 5e-48 157.6 146.3 7 20 0.00028 0.23 12.4 0.5 1 23 233 255 233 256 0.91 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF225-206 - 623 5e-48 157.6 146.3 8 20 3e-05 0.025 15.4 0.5 1 23 261 283 261 284 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF225-206 - 623 5e-48 157.6 146.3 9 20 3.8e-05 0.031 15.1 0.5 1 23 289 311 289 312 0.90 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF225-206 - 623 5e-48 157.6 146.3 10 20 0.00043 0.35 11.8 1.1 1 23 317 339 317 340 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF225-206 - 623 5e-48 157.6 146.3 11 20 0.00039 0.32 11.9 0.5 1 23 345 367 345 368 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF225-206 - 623 5e-48 157.6 146.3 12 20 0.00075 0.61 11.1 1.2 1 23 373 395 373 396 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF225-206 - 623 5e-48 157.6 146.3 13 20 3.8e-06 0.0031 18.2 1.5 1 23 401 423 401 424 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF225-206 - 623 5e-48 157.6 146.3 14 20 6.3e-06 0.0051 17.5 1.5 1 23 429 451 429 452 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF225-206 - 623 5e-48 157.6 146.3 15 20 2.1e-05 0.017 15.9 0.5 1 23 457 479 457 480 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF225-206 - 623 5e-48 157.6 146.3 16 20 1.2e-05 0.01 16.6 0.5 1 23 485 507 485 508 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF225-206 - 623 5e-48 157.6 146.3 17 20 1e-05 0.0083 16.9 2.2 1 23 513 535 513 536 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF225-206 - 623 5e-48 157.6 146.3 18 20 0.0055 4.4 8.4 2.5 1 23 541 563 541 564 0.82 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF225-206 - 623 5e-48 157.6 146.3 19 20 2 1.6e+03 0.4 0.6 2 9 570 577 569 585 0.81 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF225-206 - 623 5e-48 157.6 146.3 20 20 0.058 47 5.2 0.1 2 15 598 611 597 614 0.84 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF225-206 - 623 2e-21 75.5 131.8 1 19 0.97 7.9e+02 0.2 0.3 6 12 69 75 68 75 0.89 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF225-206 - 623 2e-21 75.5 131.8 2 19 5.7e-05 0.047 13.7 2.7 2 26 93 117 92 118 0.92 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF225-206 - 623 2e-21 75.5 131.8 3 19 0.00023 0.19 11.8 0.2 2 12 121 131 120 132 0.92 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF225-206 - 623 2e-21 75.5 131.8 4 19 0.013 10 6.2 1.2 2 22 149 169 149 173 0.80 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF225-206 - 623 2e-21 75.5 131.8 5 19 0.18 1.4e+02 2.6 0.6 2 11 177 186 177 186 0.96 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF225-206 - 623 2e-21 75.5 131.8 6 19 4.8e-05 0.039 14.0 1.1 2 26 205 229 205 230 0.90 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF225-206 - 623 2e-21 75.5 131.8 7 19 3.7e-05 0.03 14.3 0.5 2 21 233 252 233 256 0.91 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF225-206 - 623 2e-21 75.5 131.8 8 19 6.9e-05 0.056 13.5 0.5 1 24 260 283 260 286 0.90 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF225-206 - 623 2e-21 75.5 131.8 9 19 0.00022 0.18 11.8 0.3 2 12 289 299 289 300 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF225-206 - 623 2e-21 75.5 131.8 10 19 0.029 23 5.1 1.0 2 11 317 326 316 328 0.89 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF225-206 - 623 2e-21 75.5 131.8 11 19 0.042 34 4.6 0.2 2 12 345 355 345 369 0.87 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF225-206 - 623 2e-21 75.5 131.8 12 19 0.0004 0.33 11.0 0.8 2 12 373 383 373 383 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF225-206 - 623 2e-21 75.5 131.8 13 19 0.0022 1.8 8.7 1.4 2 24 401 423 401 426 0.84 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF225-206 - 623 2e-21 75.5 131.8 14 19 0.0049 4 7.5 1.2 2 12 429 439 429 452 0.77 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF225-206 - 623 2e-21 75.5 131.8 15 19 0.00052 0.42 10.7 0.7 2 24 457 479 457 482 0.87 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF225-206 - 623 2e-21 75.5 131.8 16 19 7.7e-05 0.063 13.3 0.4 2 13 485 496 485 509 0.80 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF225-206 - 623 2e-21 75.5 131.8 17 19 0.008 6.5 6.9 1.0 2 11 513 522 513 527 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF225-206 - 623 2e-21 75.5 131.8 18 19 0.025 21 5.3 1.8 2 12 541 551 541 551 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF225-206 - 623 2e-21 75.5 131.8 19 19 2.9 2.4e+03 -1.3 0.4 3 12 598 607 598 608 0.85 C2H2-type zinc finger zf-C2H2_jaz PF12171.8 27 ZNF225-206 - 623 6.1e-19 67.8 90.2 1 19 0.011 8.9 6.7 0.1 6 21 69 84 69 85 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF225-206 - 623 6.1e-19 67.8 90.2 2 19 0.58 4.7e+02 1.2 0.6 2 11 93 102 92 113 0.79 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF225-206 - 623 6.1e-19 67.8 90.2 3 19 0.0042 3.4 8.1 0.7 2 22 121 141 120 141 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF225-206 - 623 6.1e-19 67.8 90.2 4 19 0.035 28 5.1 0.1 2 13 149 160 148 169 0.84 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF225-206 - 623 6.1e-19 67.8 90.2 5 19 0.00058 0.47 10.8 0.5 2 22 177 197 176 197 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF225-206 - 623 6.1e-19 67.8 90.2 6 19 0.022 18 5.8 0.8 2 20 205 223 204 223 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF225-206 - 623 6.1e-19 67.8 90.2 7 19 0.054 44 4.5 0.0 2 20 233 251 232 252 0.79 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF225-206 - 623 6.1e-19 67.8 90.2 8 19 0.1 84 3.6 1.0 2 12 261 271 260 280 0.81 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF225-206 - 623 6.1e-19 67.8 90.2 9 19 0.038 31 5.0 0.0 2 12 289 299 288 309 0.80 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF225-206 - 623 6.1e-19 67.8 90.2 10 19 0.0093 7.6 7.0 0.5 2 16 317 331 316 337 0.84 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF225-206 - 623 6.1e-19 67.8 90.2 11 19 0.0016 1.3 9.4 0.0 2 22 345 365 344 365 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF225-206 - 623 6.1e-19 67.8 90.2 12 19 0.058 47 4.4 0.4 2 12 373 383 372 393 0.80 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF225-206 - 623 6.1e-19 67.8 90.2 13 19 0.021 17 5.8 0.2 2 20 401 419 400 421 0.82 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF225-206 - 623 6.1e-19 67.8 90.2 14 19 0.029 23 5.4 0.2 2 20 429 447 428 449 0.79 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF225-206 - 623 6.1e-19 67.8 90.2 15 19 6.8e-05 0.056 13.8 0.2 2 22 457 477 456 477 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF225-206 - 623 6.1e-19 67.8 90.2 16 19 0.0001 0.083 13.2 0.1 2 22 485 505 484 505 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF225-206 - 623 6.1e-19 67.8 90.2 17 19 0.00028 0.23 11.8 0.4 2 22 513 533 512 533 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF225-206 - 623 6.1e-19 67.8 90.2 18 19 0.63 5.2e+02 1.1 0.2 2 21 541 560 540 561 0.85 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF225-206 - 623 6.1e-19 67.8 90.2 19 19 0.84 6.9e+02 0.7 0.1 3 18 598 613 597 614 0.83 Zinc-finger double-stranded RNA-binding zf_UBZ PF18439.1 32 ZNF225-206 - 623 7.8e-16 57.4 101.2 1 19 0.011 9 6.0 1.0 2 12 92 102 91 107 0.89 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF225-206 - 623 7.8e-16 57.4 101.2 2 19 0.022 18 5.0 0.2 3 17 121 136 119 140 0.78 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF225-206 - 623 7.8e-16 57.4 101.2 3 19 0.031 25 4.6 0.3 3 13 149 159 147 161 0.85 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF225-206 - 623 7.8e-16 57.4 101.2 4 19 8.2e-05 0.067 12.8 1.8 3 21 177 196 175 196 0.93 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF225-206 - 623 7.8e-16 57.4 101.2 5 19 1.2 9.9e+02 -0.5 0.5 3 14 205 216 203 224 0.78 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF225-206 - 623 7.8e-16 57.4 101.2 6 19 0.021 17 5.1 0.0 3 20 233 251 231 252 0.77 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF225-206 - 623 7.8e-16 57.4 101.2 7 19 0.0044 3.6 7.3 0.2 2 12 260 270 259 279 0.89 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF225-206 - 623 7.8e-16 57.4 101.2 8 19 0.025 20 4.9 0.2 3 12 289 298 287 300 0.89 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF225-206 - 623 7.8e-16 57.4 101.2 9 19 0.00068 0.56 9.9 0.2 1 21 315 336 315 336 0.88 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF225-206 - 623 7.8e-16 57.4 101.2 10 19 0.033 27 4.5 0.1 3 11 345 353 343 364 0.78 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF225-206 - 623 7.8e-16 57.4 101.2 11 19 0.03 25 4.6 0.3 3 12 373 382 371 383 0.89 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF225-206 - 623 7.8e-16 57.4 101.2 12 19 0.0018 1.5 8.5 0.2 3 17 401 416 399 420 0.80 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF225-206 - 623 7.8e-16 57.4 101.2 13 19 0.0011 0.93 9.1 0.2 3 20 429 447 427 448 0.85 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF225-206 - 623 7.8e-16 57.4 101.2 14 19 0.0082 6.7 6.4 0.1 3 15 457 469 455 476 0.75 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF225-206 - 623 7.8e-16 57.4 101.2 15 19 0.0037 3 7.5 0.1 3 15 485 497 483 504 0.80 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF225-206 - 623 7.8e-16 57.4 101.2 16 19 0.00024 0.19 11.3 1.0 3 21 513 532 511 532 0.92 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF225-206 - 623 7.8e-16 57.4 101.2 17 19 0.0057 4.7 6.9 0.1 3 12 541 550 539 560 0.84 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF225-206 - 623 7.8e-16 57.4 101.2 18 19 0.017 14 5.4 0.8 4 14 570 580 567 583 0.84 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF225-206 - 623 7.8e-16 57.4 101.2 19 19 0.1 83 2.9 0.5 4 11 598 605 595 609 0.82 Ubiquitin-Binding Zinc Finger Zn-ribbon_8 PF09723.10 40 ZNF225-206 - 623 2.7e-13 49.8 113.3 1 17 0.12 96 3.2 0.8 17 34 85 100 67 104 0.55 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF225-206 - 623 2.7e-13 49.8 113.3 2 17 0.0001 0.081 13.1 3.2 6 38 121 160 120 162 0.87 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF225-206 - 623 2.7e-13 49.8 113.3 3 17 0.00016 0.13 12.4 1.9 6 34 149 184 148 186 0.89 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF225-206 - 623 2.7e-13 49.8 113.3 4 17 0.42 3.4e+02 1.5 3.4 8 32 179 210 164 217 0.79 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF225-206 - 623 2.7e-13 49.8 113.3 5 17 1.2 1e+03 -0.1 5.0 6 14 233 241 204 242 0.51 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF225-206 - 623 2.7e-13 49.8 113.3 6 17 0.051 42 4.4 0.3 6 15 233 242 232 252 0.88 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF225-206 - 623 2.7e-13 49.8 113.3 7 17 0.00048 0.39 10.9 6.4 6 35 261 297 260 299 0.83 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF225-206 - 623 2.7e-13 49.8 113.3 8 17 0.005 4.1 7.6 5.1 6 34 289 324 288 326 0.84 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF225-206 - 623 2.7e-13 49.8 113.3 9 17 0.00047 0.39 10.9 6.0 6 39 317 357 316 358 0.86 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF225-206 - 623 2.7e-13 49.8 113.3 10 17 0.00041 0.34 11.1 4.9 6 34 345 380 344 383 0.91 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF225-206 - 623 2.7e-13 49.8 113.3 11 17 0.0065 5.3 7.2 7.2 6 36 373 410 371 413 0.88 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF225-206 - 623 2.7e-13 49.8 113.3 12 17 0.0024 2 8.6 8.0 6 36 401 438 400 441 0.80 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF225-206 - 623 2.7e-13 49.8 113.3 13 17 0.0056 4.5 7.5 1.0 6 17 429 440 428 449 0.86 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF225-206 - 623 2.7e-13 49.8 113.3 14 17 1.7e-05 0.014 15.5 3.5 6 38 457 496 456 498 0.90 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF225-206 - 623 2.7e-13 49.8 113.3 15 17 0.00018 0.15 12.2 6.6 6 35 513 549 512 551 0.88 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF225-206 - 623 2.7e-13 49.8 113.3 16 17 6.4e-06 0.0052 16.9 0.8 6 34 541 576 540 581 0.89 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF225-206 - 623 2.7e-13 49.8 113.3 17 17 0.046 38 4.5 6.0 7 39 570 609 570 610 0.76 Zinc ribbon domain zf-C2H2_8 PF15909.5 98 ZNF225-206 - 623 4.3e-11 43.0 69.5 1 9 0.007 5.7 7.3 5.4 29 86 114 168 64 178 0.83 C2H2-type zinc ribbon zf-C2H2_8 PF15909.5 98 ZNF225-206 - 623 4.3e-11 43.0 69.5 2 9 0.0037 3 8.2 2.1 42 88 181 226 171 230 0.86 C2H2-type zinc ribbon zf-C2H2_8 PF15909.5 98 ZNF225-206 - 623 4.3e-11 43.0 69.5 3 9 9.1e-06 0.0074 16.6 1.6 31 86 228 280 225 288 0.89 C2H2-type zinc ribbon zf-C2H2_8 PF15909.5 98 ZNF225-206 - 623 4.3e-11 43.0 69.5 4 9 0.004 3.3 8.1 0.5 38 87 291 337 281 346 0.82 C2H2-type zinc ribbon zf-C2H2_8 PF15909.5 98 ZNF225-206 - 623 4.3e-11 43.0 69.5 5 9 1.2e-05 0.0099 16.2 1.4 37 90 374 424 354 428 0.85 C2H2-type zinc ribbon zf-C2H2_8 PF15909.5 98 ZNF225-206 - 623 4.3e-11 43.0 69.5 6 9 0.0049 4 7.8 0.7 58 88 421 450 418 457 0.81 C2H2-type zinc ribbon zf-C2H2_8 PF15909.5 98 ZNF225-206 - 623 4.3e-11 43.0 69.5 7 9 3.4e-05 0.027 14.7 2.0 40 89 487 535 471 539 0.84 C2H2-type zinc ribbon zf-C2H2_8 PF15909.5 98 ZNF225-206 - 623 4.3e-11 43.0 69.5 8 9 0.079 64 3.9 1.5 37 73 542 575 535 592 0.76 C2H2-type zinc ribbon zf-C2H2_8 PF15909.5 98 ZNF225-206 - 623 4.3e-11 43.0 69.5 9 9 3.8 3.1e+03 -1.4 0.5 65 78 595 608 565 617 0.77 C2H2-type zinc ribbon zf-trcl PF13451.6 48 ZNF225-206 - 623 6.4e-10 38.8 97.8 1 16 0.02 16 5.5 0.9 3 18 91 106 89 107 0.86 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF225-206 - 623 6.4e-10 38.8 97.8 2 16 0.15 1.2e+02 2.7 0.1 3 14 119 130 118 138 0.85 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF225-206 - 623 6.4e-10 38.8 97.8 3 16 0.047 39 4.3 0.2 3 14 147 158 145 159 0.88 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF225-206 - 623 6.4e-10 38.8 97.8 4 16 0.022 18 5.3 4.2 3 41 175 212 175 219 0.78 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF225-206 - 623 6.4e-10 38.8 97.8 5 16 0.17 1.4e+02 2.5 0.1 3 14 231 242 226 243 0.70 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF225-206 - 623 6.4e-10 38.8 97.8 6 16 0.0033 2.7 8.0 0.1 3 16 259 272 257 278 0.89 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF225-206 - 623 6.4e-10 38.8 97.8 7 16 0.0018 1.4 8.8 0.0 3 18 287 302 285 304 0.88 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF225-206 - 623 6.4e-10 38.8 97.8 8 16 0.0012 1 9.3 4.7 4 44 316 355 314 358 0.83 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF225-206 - 623 6.4e-10 38.8 97.8 9 16 0.0048 3.9 7.5 0.4 3 17 371 385 369 387 0.88 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF225-206 - 623 6.4e-10 38.8 97.8 10 16 0.0062 5 7.1 6.9 3 42 399 437 397 443 0.85 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF225-206 - 623 6.4e-10 38.8 97.8 11 16 0.027 22 5.1 5.1 3 39 427 462 425 465 0.78 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF225-206 - 623 6.4e-10 38.8 97.8 12 16 0.05 40 4.2 0.1 4 14 484 494 482 495 0.86 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF225-206 - 623 6.4e-10 38.8 97.8 13 16 0.01 8.3 6.4 0.2 3 15 511 523 509 532 0.89 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF225-206 - 623 6.4e-10 38.8 97.8 14 16 0.0054 4.4 7.3 0.1 3 17 539 553 537 556 0.88 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF225-206 - 623 6.4e-10 38.8 97.8 15 16 0.023 19 5.3 0.3 3 17 567 581 565 588 0.83 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF225-206 - 623 6.4e-10 38.8 97.8 16 16 0.091 74 3.4 0.5 3 12 595 604 593 607 0.86 Probable zinc-ribbon domain XPA_N PF01286.18 32 ZNF225-206 - 623 1.7e-09 37.6 108.3 1 18 0.0032 2.6 8.2 1.6 3 14 94 105 92 108 0.89 XPA protein N-terminal XPA_N PF01286.18 32 ZNF225-206 - 623 1.7e-09 37.6 108.3 2 18 0.0085 7 6.8 0.1 3 14 122 133 121 138 0.89 XPA protein N-terminal XPA_N PF01286.18 32 ZNF225-206 - 623 1.7e-09 37.6 108.3 3 18 0.067 55 3.9 0.5 3 12 150 159 148 160 0.89 XPA protein N-terminal XPA_N PF01286.18 32 ZNF225-206 - 623 1.7e-09 37.6 108.3 4 18 0.0016 1.3 9.1 0.0 3 19 178 195 176 197 0.86 XPA protein N-terminal XPA_N PF01286.18 32 ZNF225-206 - 623 1.7e-09 37.6 108.3 5 18 0.12 98 3.1 0.1 3 12 234 243 233 248 0.89 XPA protein N-terminal XPA_N PF01286.18 32 ZNF225-206 - 623 1.7e-09 37.6 108.3 6 18 0.0082 6.6 6.9 0.2 3 11 262 270 260 272 0.90 XPA protein N-terminal XPA_N PF01286.18 32 ZNF225-206 - 623 1.7e-09 37.6 108.3 7 18 0.016 13 5.9 0.1 3 11 290 298 288 301 0.90 XPA protein N-terminal XPA_N PF01286.18 32 ZNF225-206 - 623 1.7e-09 37.6 108.3 8 18 0.019 15 5.7 0.5 3 11 318 326 317 329 0.90 XPA protein N-terminal XPA_N PF01286.18 32 ZNF225-206 - 623 1.7e-09 37.6 108.3 9 18 0.15 1.2e+02 2.8 0.2 3 9 346 352 344 355 0.86 XPA protein N-terminal XPA_N PF01286.18 32 ZNF225-206 - 623 1.7e-09 37.6 108.3 10 18 0.01 8.5 6.5 0.4 3 12 374 383 372 391 0.81 XPA protein N-terminal XPA_N PF01286.18 32 ZNF225-206 - 623 1.7e-09 37.6 108.3 11 18 0.00084 0.68 10.0 0.1 3 19 402 419 400 420 0.82 XPA protein N-terminal XPA_N PF01286.18 32 ZNF225-206 - 623 1.7e-09 37.6 108.3 12 18 0.0014 1.1 9.3 0.3 3 18 430 446 428 447 0.78 XPA protein N-terminal XPA_N PF01286.18 32 ZNF225-206 - 623 1.7e-09 37.6 108.3 13 18 0.0093 7.6 6.7 0.4 3 12 458 467 456 471 0.88 XPA protein N-terminal XPA_N PF01286.18 32 ZNF225-206 - 623 1.7e-09 37.6 108.3 14 18 0.011 8.6 6.5 0.2 3 12 486 495 484 498 0.88 XPA protein N-terminal XPA_N PF01286.18 32 ZNF225-206 - 623 1.7e-09 37.6 108.3 15 18 0.0034 2.7 8.1 0.3 3 12 514 523 512 531 0.81 XPA protein N-terminal XPA_N PF01286.18 32 ZNF225-206 - 623 1.7e-09 37.6 108.3 16 18 0.029 24 5.1 0.1 3 11 542 550 540 552 0.90 XPA protein N-terminal XPA_N PF01286.18 32 ZNF225-206 - 623 1.7e-09 37.6 108.3 17 18 0.26 2.1e+02 2.0 1.1 3 14 570 581 569 585 0.83 XPA protein N-terminal XPA_N PF01286.18 32 ZNF225-206 - 623 1.7e-09 37.6 108.3 18 18 0.18 1.5e+02 2.5 0.3 3 10 598 605 596 608 0.85 XPA protein N-terminal zf-met PF12874.7 25 ZNF225-206 - 623 2.3e-07 31.0 115.4 1 20 0.059 48 4.5 0.1 5 21 69 85 68 85 0.90 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF225-206 - 623 2.3e-07 31.0 115.4 2 20 0.042 34 5.0 2.2 2 21 94 113 93 115 0.92 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF225-206 - 623 2.3e-07 31.0 115.4 3 20 0.00059 0.48 10.9 1.2 1 21 121 141 121 144 0.91 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF225-206 - 623 2.3e-07 31.0 115.4 4 20 3.2 2.6e+03 -1.0 0.1 1 14 149 162 149 167 0.82 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF225-206 - 623 2.3e-07 31.0 115.4 5 20 0.073 60 4.2 1.0 3 21 179 197 177 200 0.88 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF225-206 - 623 2.3e-07 31.0 115.4 6 20 3.2e-05 0.026 14.9 2.5 1 19 205 223 205 227 0.90 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF225-206 - 623 2.3e-07 31.0 115.4 7 20 0.063 52 4.4 0.1 1 19 233 251 233 252 0.88 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF225-206 - 623 2.3e-07 31.0 115.4 8 20 0.067 55 4.4 0.2 1 19 261 279 261 280 0.88 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF225-206 - 623 2.3e-07 31.0 115.4 9 20 1 8.2e+02 0.6 0.1 1 10 289 298 289 309 0.84 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF225-206 - 623 2.3e-07 31.0 115.4 10 20 0.013 11 6.6 0.8 1 21 317 337 317 339 0.92 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF225-206 - 623 2.3e-07 31.0 115.4 11 20 0.16 1.3e+02 3.2 0.1 1 21 345 365 345 368 0.88 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF225-206 - 623 2.3e-07 31.0 115.4 12 20 2.1 1.7e+03 -0.4 0.5 1 10 373 382 373 393 0.87 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF225-206 - 623 2.3e-07 31.0 115.4 13 20 0.0061 5 7.7 0.3 1 19 401 419 401 421 0.93 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF225-206 - 623 2.3e-07 31.0 115.4 14 20 0.0023 1.9 9.0 0.6 1 19 429 447 429 451 0.94 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF225-206 - 623 2.3e-07 31.0 115.4 15 20 6.8e-05 0.055 13.9 0.4 1 21 457 477 457 479 0.93 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF225-206 - 623 2.3e-07 31.0 115.4 16 20 0.013 10 6.7 0.3 1 20 485 504 485 505 0.91 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF225-206 - 623 2.3e-07 31.0 115.4 17 20 0.0026 2.2 8.8 1.2 1 21 513 533 513 536 0.93 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF225-206 - 623 2.3e-07 31.0 115.4 18 20 8.7 7.1e+03 -2.4 0.2 1 10 541 550 541 559 0.83 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF225-206 - 623 2.3e-07 31.0 115.4 19 20 7.2 5.8e+03 -2.1 0.6 2 10 570 578 569 585 0.79 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF225-206 - 623 2.3e-07 31.0 115.4 20 20 0.75 6.1e+02 1.0 0.1 3 16 599 612 597 614 0.84 Zinc-finger of C2H2 type # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF225-206.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF225-206.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF225-206.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF225-206.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF225-206.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:01:56 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZNF227-201 - 799 5.2e-133 428.1 154.4 1 21 0.0043 4.3 7.9 0.3 11 25 246 260 244 261 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF227-201 - 799 5.2e-133 428.1 154.4 2 21 9.2 9.1e+03 -2.6 0.1 8 13 271 276 270 276 0.87 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF227-201 - 799 5.2e-133 428.1 154.4 3 21 0.013 13 6.5 2.0 1 17 283 299 283 308 0.81 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF227-201 - 799 5.2e-133 428.1 154.4 4 21 5.5e-07 0.00055 20.2 0.7 7 26 316 335 310 335 0.84 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF227-201 - 799 5.2e-133 428.1 154.4 5 21 7.4e-10 7.4e-07 29.3 1.9 5 25 342 362 338 363 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF227-201 - 799 5.2e-133 428.1 154.4 6 21 2.8e-08 2.8e-05 24.3 3.1 5 24 370 389 366 390 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF227-201 - 799 5.2e-133 428.1 154.4 7 21 1.7e-11 1.7e-08 34.5 0.5 1 25 394 418 394 419 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF227-201 - 799 5.2e-133 428.1 154.4 8 21 5.6e-10 5.6e-07 29.7 3.3 5 26 426 447 424 447 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF227-201 - 799 5.2e-133 428.1 154.4 9 21 3.9e-10 3.9e-07 30.2 1.7 5 26 454 475 454 475 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF227-201 - 799 5.2e-133 428.1 154.4 10 21 4.6e-10 4.6e-07 30.0 2.8 5 25 482 502 479 503 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF227-201 - 799 5.2e-133 428.1 154.4 11 21 3e-09 3e-06 27.4 0.3 1 25 506 530 506 531 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF227-201 - 799 5.2e-133 428.1 154.4 12 21 4.3e-11 4.2e-08 33.2 0.6 2 25 535 558 534 559 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF227-201 - 799 5.2e-133 428.1 154.4 13 21 9.6e-10 9.5e-07 29.0 0.3 1 25 562 586 562 586 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF227-201 - 799 5.2e-133 428.1 154.4 14 21 1.8e-10 1.7e-07 31.3 1.2 2 25 591 614 590 615 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF227-201 - 799 5.2e-133 428.1 154.4 15 21 1.7e-10 1.7e-07 31.4 0.3 2 25 619 642 618 643 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF227-201 - 799 5.2e-133 428.1 154.4 16 21 7.7e-12 7.7e-09 35.6 0.3 1 25 646 670 646 671 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF227-201 - 799 5.2e-133 428.1 154.4 17 21 2.1e-10 2.1e-07 31.0 1.1 4 25 677 698 675 699 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF227-201 - 799 5.2e-133 428.1 154.4 18 21 1.7e-09 1.7e-06 28.2 1.7 1 25 702 726 702 726 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF227-201 - 799 5.2e-133 428.1 154.4 19 21 7e-09 6.9e-06 26.2 0.2 1 25 730 754 730 755 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF227-201 - 799 5.2e-133 428.1 154.4 20 21 2.8e-11 2.8e-08 33.8 1.0 2 26 759 783 758 783 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF227-201 - 799 5.2e-133 428.1 154.4 21 21 0.0028 2.8 8.5 0.6 2 13 787 798 786 799 0.92 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZNF227-201 - 799 1.9e-91 295.7 136.6 1 19 0.019 19 6.0 0.1 1 13 250 262 250 268 0.87 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF227-201 - 799 1.9e-91 295.7 136.6 2 19 8.7e-05 0.087 13.3 0.7 8 23 276 291 274 291 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF227-201 - 799 1.9e-91 295.7 136.6 3 19 5e-07 0.0005 20.4 0.5 1 23 324 346 324 346 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF227-201 - 799 1.9e-91 295.7 136.6 4 19 2.1e-06 0.0021 18.4 6.1 1 23 352 374 352 374 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF227-201 - 799 1.9e-91 295.7 136.6 5 19 4.1e-06 0.0041 17.5 0.1 1 23 380 402 380 402 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF227-201 - 799 1.9e-91 295.7 136.6 6 19 3e-07 0.0003 21.1 1.9 1 23 408 430 408 430 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF227-201 - 799 1.9e-91 295.7 136.6 7 19 5.6e-05 0.056 13.9 3.0 1 23 436 458 436 458 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF227-201 - 799 1.9e-91 295.7 136.6 8 19 1.9e-06 0.0019 18.6 1.3 1 23 464 486 464 486 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF227-201 - 799 1.9e-91 295.7 136.6 9 19 1.8e-09 1.8e-06 28.1 0.2 1 23 492 514 492 514 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF227-201 - 799 1.9e-91 295.7 136.6 10 19 1.5e-08 1.5e-05 25.2 1.2 1 23 520 542 520 542 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF227-201 - 799 1.9e-91 295.7 136.6 11 19 9.6e-08 9.6e-05 22.6 0.5 1 23 548 570 548 570 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF227-201 - 799 1.9e-91 295.7 136.6 12 19 4.7e-07 0.00047 20.5 0.9 1 23 576 598 576 598 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF227-201 - 799 1.9e-91 295.7 136.6 13 19 4.1e-08 4.1e-05 23.8 0.6 1 23 604 626 604 626 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF227-201 - 799 1.9e-91 295.7 136.6 14 19 3.8e-09 3.8e-06 27.1 0.2 1 23 632 654 632 654 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF227-201 - 799 1.9e-91 295.7 136.6 15 19 3.5e-07 0.00035 20.9 1.1 1 23 660 682 660 682 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF227-201 - 799 1.9e-91 295.7 136.6 16 19 1e-07 0.0001 22.5 1.3 1 23 688 710 688 710 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF227-201 - 799 1.9e-91 295.7 136.6 17 19 6.7e-07 0.00066 20.0 0.1 1 23 716 738 716 738 0.93 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF227-201 - 799 1.9e-91 295.7 136.6 18 19 9.1e-08 9.1e-05 22.7 0.1 1 23 744 766 744 766 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF227-201 - 799 1.9e-91 295.7 136.6 19 19 3.1e-06 0.0031 17.9 4.1 1 23 772 794 772 794 0.99 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZNF227-201 - 799 1.1e-46 153.4 143.2 1 19 0.068 67 4.7 0.2 1 14 250 263 250 268 0.78 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF227-201 - 799 1.1e-46 153.4 143.2 2 19 0.13 1.3e+02 3.9 0.6 8 23 276 291 275 292 0.88 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF227-201 - 799 1.1e-46 153.4 143.2 3 19 3.5e-06 0.0035 18.1 0.3 1 23 324 346 324 347 0.97 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF227-201 - 799 1.1e-46 153.4 143.2 4 19 0.0011 1.1 10.3 6.1 1 23 352 374 352 375 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF227-201 - 799 1.1e-46 153.4 143.2 5 19 0.0016 1.6 9.8 0.3 1 23 380 402 380 403 0.83 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF227-201 - 799 1.1e-46 153.4 143.2 6 19 0.00057 0.57 11.2 1.9 1 23 408 430 408 431 0.90 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF227-201 - 799 1.1e-46 153.4 143.2 7 19 0.00029 0.28 12.1 2.5 1 23 436 458 436 459 0.91 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF227-201 - 799 1.1e-46 153.4 143.2 8 19 5.4e-05 0.054 14.4 0.8 1 23 464 486 464 487 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF227-201 - 799 1.1e-46 153.4 143.2 9 19 1.5e-05 0.015 16.1 0.4 1 23 492 514 492 515 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF227-201 - 799 1.1e-46 153.4 143.2 10 19 1.2e-05 0.012 16.4 1.2 1 23 520 542 520 543 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF227-201 - 799 1.1e-46 153.4 143.2 11 19 9.7e-05 0.097 13.6 0.4 1 23 548 570 548 571 0.91 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF227-201 - 799 1.1e-46 153.4 143.2 12 19 0.00021 0.21 12.5 1.2 1 23 576 598 576 599 0.91 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF227-201 - 799 1.1e-46 153.4 143.2 13 19 4.9e-05 0.049 14.5 0.7 1 23 604 626 604 627 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF227-201 - 799 1.1e-46 153.4 143.2 14 19 3.8e-06 0.0038 17.9 0.3 1 23 632 654 632 655 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF227-201 - 799 1.1e-46 153.4 143.2 15 19 5.3e-05 0.053 14.4 0.7 1 23 660 682 660 683 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF227-201 - 799 1.1e-46 153.4 143.2 16 19 1.8e-05 0.018 15.8 1.1 1 23 688 710 688 711 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF227-201 - 799 1.1e-46 153.4 143.2 17 19 0.00012 0.12 13.2 0.2 1 23 716 738 716 739 0.91 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF227-201 - 799 1.1e-46 153.4 143.2 18 19 1.7e-05 0.017 15.9 0.3 1 23 744 766 744 767 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF227-201 - 799 1.1e-46 153.4 143.2 19 19 0.00032 0.32 12.0 2.4 1 23 772 794 772 795 0.94 C2H2-type zinc finger zf-C2H2_jaz PF12171.8 27 ZNF227-201 - 799 5.7e-25 87.0 69.7 1 18 8.6 8.6e+03 -2.8 0.0 4 12 252 260 250 260 0.85 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF227-201 - 799 5.7e-25 87.0 69.7 2 18 0.003 3 8.3 0.1 2 24 324 346 323 346 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF227-201 - 799 5.7e-25 87.0 69.7 3 18 3.8 3.7e+03 -1.6 4.8 2 21 352 371 351 372 0.84 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF227-201 - 799 5.7e-25 87.0 69.7 4 18 0.052 52 4.3 0.0 2 12 380 390 379 400 0.75 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF227-201 - 799 5.7e-25 87.0 69.7 5 18 0.039 39 4.7 0.5 2 21 408 427 407 428 0.80 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF227-201 - 799 5.7e-25 87.0 69.7 6 18 0.053 53 4.3 0.1 2 13 436 447 435 449 0.87 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF227-201 - 799 5.7e-25 87.0 69.7 7 18 0.0017 1.7 9.0 0.1 2 22 464 484 463 484 0.91 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF227-201 - 799 5.7e-25 87.0 69.7 8 18 0.00018 0.18 12.2 0.1 2 22 492 512 491 512 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF227-201 - 799 5.7e-25 87.0 69.7 9 18 0.00017 0.17 12.2 0.1 2 22 520 540 519 540 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF227-201 - 799 5.7e-25 87.0 69.7 10 18 0.023 23 5.4 0.1 2 20 548 566 547 567 0.90 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF227-201 - 799 5.7e-25 87.0 69.7 11 18 0.0058 5.7 7.3 0.1 2 22 576 596 575 596 0.89 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF227-201 - 799 5.7e-25 87.0 69.7 12 18 0.00033 0.33 11.3 0.5 2 22 604 624 603 624 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF227-201 - 799 5.7e-25 87.0 69.7 13 18 0.0098 9.7 6.6 0.0 2 22 632 652 631 652 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF227-201 - 799 5.7e-25 87.0 69.7 14 18 0.0022 2.1 8.7 0.3 2 24 660 682 659 682 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF227-201 - 799 5.7e-25 87.0 69.7 15 18 0.0079 7.8 6.9 0.0 2 21 688 707 687 708 0.87 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF227-201 - 799 5.7e-25 87.0 69.7 16 18 0.029 29 5.1 0.0 2 21 716 735 715 735 0.87 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF227-201 - 799 5.7e-25 87.0 69.7 17 18 0.0012 1.2 9.5 0.0 2 22 744 764 743 764 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF227-201 - 799 5.7e-25 87.0 69.7 18 18 0.0022 2.2 8.7 0.9 2 22 772 792 771 792 0.88 Zinc-finger double-stranded RNA-binding KRAB PF01352.27 42 ZNF227-201 - 799 3.2e-20 71.5 0.3 1 1 6e-23 6e-20 70.6 0.3 2 42 23 63 22 63 0.98 KRAB box Zn-ribbon_8 PF09723.10 40 ZNF227-201 - 799 1e-13 51.1 100.1 1 16 1 1e+03 -0.1 0.1 8 15 252 259 244 269 0.76 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF227-201 - 799 1e-13 51.1 100.1 2 16 0.00098 0.97 9.6 4.9 6 34 324 359 323 359 0.81 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF227-201 - 799 1e-13 51.1 100.1 3 16 0.12 1.2e+02 3.0 13.3 6 34 352 387 351 389 0.85 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF227-201 - 799 1e-13 51.1 100.1 4 16 0.00012 0.12 12.5 5.3 6 34 380 415 379 421 0.92 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF227-201 - 799 1e-13 51.1 100.1 5 16 0.00015 0.15 12.2 4.1 6 34 408 443 407 447 0.90 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF227-201 - 799 1e-13 51.1 100.1 6 16 0.0024 2.4 8.3 3.9 6 37 436 474 435 475 0.76 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF227-201 - 799 1e-13 51.1 100.1 7 16 0.00015 0.15 12.2 4.2 6 34 464 499 463 504 0.83 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF227-201 - 799 1e-13 51.1 100.1 8 16 0.00079 0.79 9.9 4.3 6 34 492 527 491 530 0.89 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF227-201 - 799 1e-13 51.1 100.1 9 16 0.0005 0.49 10.5 3.4 6 35 520 556 518 558 0.88 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF227-201 - 799 1e-13 51.1 100.1 10 16 7e-05 0.07 13.3 2.8 6 34 548 583 547 589 0.88 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF227-201 - 799 1e-13 51.1 100.1 11 16 0.00042 0.42 10.8 5.2 6 35 576 612 575 617 0.88 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF227-201 - 799 1e-13 51.1 100.1 12 16 0.00018 0.17 12.0 2.7 6 34 604 639 603 644 0.92 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF227-201 - 799 1e-13 51.1 100.1 13 16 0.00085 0.84 9.8 1.4 6 34 632 667 631 675 0.90 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF227-201 - 799 1e-13 51.1 100.1 14 16 2.6e-05 0.026 14.6 2.2 6 34 688 723 687 726 0.92 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF227-201 - 799 1e-13 51.1 100.1 15 16 0.0046 4.6 7.5 4.8 6 36 744 781 743 784 0.88 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF227-201 - 799 1e-13 51.1 100.1 16 16 0.1 1e+02 3.2 0.2 6 19 772 785 771 791 0.85 Zinc ribbon domain zf_UBZ PF18439.1 32 ZNF227-201 - 799 9.6e-11 41.1 81.5 1 19 3.2 3.2e+03 -2.2 0.0 9 23 192 207 192 207 0.81 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF227-201 - 799 9.6e-11 41.1 81.5 2 19 0.77 7.7e+02 -0.2 0.1 3 12 250 259 249 266 0.83 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF227-201 - 799 9.6e-11 41.1 81.5 3 19 0.025 25 4.6 0.1 2 15 323 336 322 338 0.87 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF227-201 - 799 9.6e-11 41.1 81.5 4 19 0.001 1 9.0 4.2 3 21 352 371 350 371 0.94 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF227-201 - 799 9.6e-11 41.1 81.5 5 19 0.033 32 4.2 0.3 3 10 380 387 378 390 0.86 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF227-201 - 799 9.6e-11 41.1 81.5 6 19 0.015 15 5.3 0.1 3 13 408 418 406 422 0.83 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF227-201 - 799 9.6e-11 41.1 81.5 7 19 0.13 1.3e+02 2.3 0.5 3 15 436 448 434 455 0.83 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF227-201 - 799 9.6e-11 41.1 81.5 8 19 0.11 1.1e+02 2.5 0.1 3 12 464 473 462 480 0.84 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF227-201 - 799 9.6e-11 41.1 81.5 9 19 0.0039 3.9 7.2 0.1 3 20 492 510 490 511 0.84 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF227-201 - 799 9.6e-11 41.1 81.5 10 19 0.00047 0.47 10.1 0.2 3 21 520 539 518 539 0.93 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF227-201 - 799 9.6e-11 41.1 81.5 11 19 0.31 3.1e+02 1.1 0.1 3 13 548 558 546 565 0.87 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF227-201 - 799 9.6e-11 41.1 81.5 12 19 0.013 13 5.5 0.1 3 13 576 586 574 595 0.85 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF227-201 - 799 9.6e-11 41.1 81.5 13 19 0.0019 1.8 8.2 0.3 3 20 604 622 602 623 0.83 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF227-201 - 799 9.6e-11 41.1 81.5 14 19 0.024 24 4.6 0.0 3 21 632 651 630 651 0.93 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF227-201 - 799 9.6e-11 41.1 81.5 15 19 0.41 4.1e+02 0.7 0.1 3 12 660 669 658 678 0.86 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF227-201 - 799 9.6e-11 41.1 81.5 16 19 0.02 20 4.9 0.1 3 12 688 697 686 707 0.82 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF227-201 - 799 9.6e-11 41.1 81.5 17 19 0.0099 9.9 5.9 0.1 3 15 716 728 714 735 0.83 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF227-201 - 799 9.6e-11 41.1 81.5 18 19 0.00071 0.71 9.5 0.1 3 19 744 760 742 763 0.82 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF227-201 - 799 9.6e-11 41.1 81.5 19 19 0.21 2.1e+02 1.6 0.1 3 12 772 781 770 790 0.83 Ubiquitin-Binding Zinc Finger zf-C2H2_6 PF13912.6 27 ZNF227-201 - 799 5e-10 39.1 132.5 1 20 0.17 1.7e+02 2.4 0.2 2 13 250 261 250 261 0.91 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF227-201 - 799 5e-10 39.1 132.5 2 20 5.8 5.8e+03 -2.5 0.2 20 26 283 289 282 290 0.81 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF227-201 - 799 5e-10 39.1 132.5 3 20 1.7 1.7e+03 -0.8 0.4 10 16 310 316 308 316 0.87 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF227-201 - 799 5e-10 39.1 132.5 4 20 8e-06 0.008 16.2 0.4 2 24 324 346 323 349 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF227-201 - 799 5e-10 39.1 132.5 5 20 0.86 8.6e+02 0.1 4.3 2 12 352 362 352 363 0.90 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF227-201 - 799 5e-10 39.1 132.5 6 20 0.00047 0.47 10.5 0.3 2 26 380 404 380 405 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF227-201 - 799 5e-10 39.1 132.5 7 20 0.028 28 4.9 0.7 2 11 408 417 408 419 0.92 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF227-201 - 799 5e-10 39.1 132.5 8 20 0.0022 2.2 8.4 1.3 2 12 436 446 436 458 0.90 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF227-201 - 799 5e-10 39.1 132.5 9 20 0.15 1.5e+02 2.5 0.2 2 13 464 475 464 484 0.85 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF227-201 - 799 5e-10 39.1 132.5 10 20 0.0014 1.4 9.0 0.4 2 12 492 502 492 510 0.90 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF227-201 - 799 5e-10 39.1 132.5 11 20 0.014 14 5.8 1.0 1 12 519 530 519 543 0.80 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF227-201 - 799 5e-10 39.1 132.5 12 20 0.00071 0.71 10.0 0.5 2 13 548 559 548 566 0.86 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF227-201 - 799 5e-10 39.1 132.5 13 20 0.012 12 6.0 0.8 2 12 576 586 576 601 0.76 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF227-201 - 799 5e-10 39.1 132.5 14 20 0.011 11 6.2 1.6 2 12 604 614 604 615 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF227-201 - 799 5e-10 39.1 132.5 15 20 0.033 33 4.6 0.8 2 13 632 643 632 655 0.78 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF227-201 - 799 5e-10 39.1 132.5 16 20 0.00067 0.66 10.0 0.5 2 13 660 671 660 672 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF227-201 - 799 5e-10 39.1 132.5 17 20 0.0031 3.1 7.9 1.6 2 24 688 710 688 713 0.88 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF227-201 - 799 5e-10 39.1 132.5 18 20 0.007 7 6.8 0.1 2 12 716 726 716 735 0.87 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF227-201 - 799 5e-10 39.1 132.5 19 20 0.0079 7.9 6.6 0.4 2 12 744 754 743 767 0.81 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF227-201 - 799 5e-10 39.1 132.5 20 20 0.0058 5.7 7.0 0.5 2 12 772 782 772 784 0.93 C2H2-type zinc finger XPA_N PF01286.18 32 ZNF227-201 - 799 1.1e-08 34.9 85.4 1 18 0.4 4e+02 1.2 0.1 4 14 252 262 249 262 0.84 XPA protein N-terminal XPA_N PF01286.18 32 ZNF227-201 - 799 1.1e-08 34.9 85.4 2 18 0.026 26 4.9 0.4 3 14 325 336 324 337 0.90 XPA protein N-terminal XPA_N PF01286.18 32 ZNF227-201 - 799 1.1e-08 34.9 85.4 3 18 0.095 95 3.2 5.0 3 14 353 364 351 370 0.87 XPA protein N-terminal XPA_N PF01286.18 32 ZNF227-201 - 799 1.1e-08 34.9 85.4 4 18 0.0044 4.4 7.4 0.1 3 14 381 392 379 394 0.87 XPA protein N-terminal XPA_N PF01286.18 32 ZNF227-201 - 799 1.1e-08 34.9 85.4 5 18 0.0046 4.6 7.4 0.2 3 13 409 419 407 423 0.88 XPA protein N-terminal XPA_N PF01286.18 32 ZNF227-201 - 799 1.1e-08 34.9 85.4 6 18 0.19 1.9e+02 2.2 0.1 3 12 437 446 435 448 0.84 XPA protein N-terminal XPA_N PF01286.18 32 ZNF227-201 - 799 1.1e-08 34.9 85.4 7 18 0.11 1.1e+02 2.9 0.1 3 12 465 474 463 476 0.89 XPA protein N-terminal XPA_N PF01286.18 32 ZNF227-201 - 799 1.1e-08 34.9 85.4 8 18 0.01 10 6.3 0.1 3 13 493 503 491 507 0.88 XPA protein N-terminal XPA_N PF01286.18 32 ZNF227-201 - 799 1.1e-08 34.9 85.4 9 18 0.013 12 6.0 0.3 3 14 521 532 519 538 0.84 XPA protein N-terminal XPA_N PF01286.18 32 ZNF227-201 - 799 1.1e-08 34.9 85.4 10 18 0.19 1.9e+02 2.2 0.1 3 14 549 560 547 561 0.82 XPA protein N-terminal XPA_N PF01286.18 32 ZNF227-201 - 799 1.1e-08 34.9 85.4 11 18 0.011 11 6.1 0.2 3 11 577 585 575 587 0.89 XPA protein N-terminal XPA_N PF01286.18 32 ZNF227-201 - 799 1.1e-08 34.9 85.4 12 18 0.044 44 4.2 0.3 3 13 605 615 603 617 0.87 XPA protein N-terminal XPA_N PF01286.18 32 ZNF227-201 - 799 1.1e-08 34.9 85.4 13 18 0.31 3.1e+02 1.5 0.1 3 14 633 644 631 646 0.89 XPA protein N-terminal XPA_N PF01286.18 32 ZNF227-201 - 799 1.1e-08 34.9 85.4 14 18 0.12 1.2e+02 2.8 0.1 3 14 661 672 659 673 0.83 XPA protein N-terminal XPA_N PF01286.18 32 ZNF227-201 - 799 1.1e-08 34.9 85.4 15 18 0.0013 1.3 9.1 0.0 3 14 689 700 687 706 0.88 XPA protein N-terminal XPA_N PF01286.18 32 ZNF227-201 - 799 1.1e-08 34.9 85.4 16 18 0.01 10 6.2 0.2 3 11 717 725 715 727 0.87 XPA protein N-terminal XPA_N PF01286.18 32 ZNF227-201 - 799 1.1e-08 34.9 85.4 17 18 0.0021 2 8.5 0.5 3 14 745 756 744 759 0.93 XPA protein N-terminal XPA_N PF01286.18 32 ZNF227-201 - 799 1.1e-08 34.9 85.4 18 18 0.48 4.7e+02 0.9 0.3 3 10 773 780 770 785 0.66 XPA protein N-terminal C1_1 PF00130.22 53 ZNF227-201 - 799 5.1e-08 32.7 83.5 1 15 3.5 3.5e+03 -2.0 0.1 11 21 249 259 247 282 0.61 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF227-201 - 799 5.1e-08 32.7 83.5 2 15 7.3 7.3e+03 -3.0 0.0 37 46 298 309 297 316 0.72 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF227-201 - 799 5.1e-08 32.7 83.5 3 15 0.014 14 5.7 11.2 7 51 318 378 312 387 0.85 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF227-201 - 799 5.1e-08 32.7 83.5 4 15 0.0026 2.6 8.0 2.1 1 35 370 414 370 415 0.86 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF227-201 - 799 5.1e-08 32.7 83.5 5 15 0.0039 3.9 7.4 9.2 1 50 398 461 398 473 0.87 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF227-201 - 799 5.1e-08 32.7 83.5 6 15 0.13 1.3e+02 2.6 0.3 4 21 457 473 454 479 0.75 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF227-201 - 799 5.1e-08 32.7 83.5 7 15 8.6e-05 0.085 12.8 1.0 2 35 482 526 480 532 0.91 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF227-201 - 799 5.1e-08 32.7 83.5 8 15 0.013 13 5.7 1.4 1 35 510 554 510 557 0.78 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF227-201 - 799 5.1e-08 32.7 83.5 9 15 0.0025 2.5 8.0 0.8 1 35 538 582 538 585 0.83 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF227-201 - 799 5.1e-08 32.7 83.5 10 15 0.0052 5.1 7.1 2.7 1 36 566 611 566 614 0.81 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF227-201 - 799 5.1e-08 32.7 83.5 11 15 0.009 8.9 6.3 2.8 5 35 598 638 592 641 0.78 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF227-201 - 799 5.1e-08 32.7 83.5 12 15 0.045 45 4.0 0.2 1 26 622 647 622 654 0.69 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF227-201 - 799 5.1e-08 32.7 83.5 13 15 0.00026 0.26 11.2 0.2 1 35 650 694 650 698 0.86 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF227-201 - 799 5.1e-08 32.7 83.5 14 15 0.0017 1.7 8.6 2.9 1 35 705 750 705 756 0.88 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF227-201 - 799 5.1e-08 32.7 83.5 15 15 0.073 72 3.4 0.7 1 23 762 783 762 796 0.73 Phorbol esters/diacylglycerol binding domain (C1 domain) # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF227-201.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF227-201.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF227-201.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF227-201.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF227-201.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:01:57 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZNF227-202 - 748 7.1e-134 430.9 153.8 1 21 0.004 4 8.1 0.3 11 25 195 209 193 210 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF227-202 - 748 7.1e-134 430.9 153.8 2 21 7.5 7.5e+03 -2.3 0.1 8 13 220 225 219 226 0.87 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF227-202 - 748 7.1e-134 430.9 153.8 3 21 0.012 12 6.6 2.0 1 17 232 248 232 257 0.81 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF227-202 - 748 7.1e-134 430.9 153.8 4 21 5.1e-07 0.00051 20.4 0.7 7 26 265 284 259 284 0.84 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF227-202 - 748 7.1e-134 430.9 153.8 5 21 6.8e-10 6.8e-07 29.4 1.9 5 25 291 311 287 312 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF227-202 - 748 7.1e-134 430.9 153.8 6 21 2.6e-08 2.6e-05 24.4 3.1 5 24 319 338 315 339 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF227-202 - 748 7.1e-134 430.9 153.8 7 21 1.6e-11 1.6e-08 34.6 0.5 1 25 343 367 343 368 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF227-202 - 748 7.1e-134 430.9 153.8 8 21 5.2e-10 5.2e-07 29.8 3.3 5 26 375 396 373 396 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF227-202 - 748 7.1e-134 430.9 153.8 9 21 3.6e-10 3.6e-07 30.3 1.7 5 26 403 424 403 424 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF227-202 - 748 7.1e-134 430.9 153.8 10 21 4.2e-10 4.2e-07 30.1 2.8 5 25 431 451 428 452 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF227-202 - 748 7.1e-134 430.9 153.8 11 21 2.8e-09 2.7e-06 27.5 0.3 1 25 455 479 455 480 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF227-202 - 748 7.1e-134 430.9 153.8 12 21 3.9e-11 3.9e-08 33.4 0.6 2 25 484 507 483 508 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF227-202 - 748 7.1e-134 430.9 153.8 13 21 8.9e-10 8.8e-07 29.1 0.3 1 25 511 535 511 535 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF227-202 - 748 7.1e-134 430.9 153.8 14 21 1.6e-10 1.6e-07 31.4 1.2 2 25 540 563 539 564 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF227-202 - 748 7.1e-134 430.9 153.8 15 21 1.5e-10 1.5e-07 31.5 0.3 2 25 568 591 567 592 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF227-202 - 748 7.1e-134 430.9 153.8 16 21 7.1e-12 7.1e-09 35.7 0.3 1 25 595 619 595 620 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF227-202 - 748 7.1e-134 430.9 153.8 17 21 2e-10 1.9e-07 31.2 1.1 4 25 626 647 624 648 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF227-202 - 748 7.1e-134 430.9 153.8 18 21 1.6e-09 1.6e-06 28.3 1.7 1 25 651 675 651 675 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF227-202 - 748 7.1e-134 430.9 153.8 19 21 6.4e-09 6.4e-06 26.4 0.2 1 25 679 703 679 704 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF227-202 - 748 7.1e-134 430.9 153.8 20 21 2.6e-11 2.6e-08 33.9 1.0 2 26 708 732 707 732 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF227-202 - 748 7.1e-134 430.9 153.8 21 21 0.0026 2.6 8.6 0.6 2 13 736 747 735 748 0.92 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZNF227-202 - 748 4.5e-92 297.7 136.6 1 19 0.017 17 6.1 0.1 1 13 199 211 199 217 0.87 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF227-202 - 748 4.5e-92 297.7 136.6 2 19 8.1e-05 0.08 13.4 0.7 8 23 225 240 223 240 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF227-202 - 748 4.5e-92 297.7 136.6 3 19 4.7e-07 0.00047 20.5 0.5 1 23 273 295 273 295 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF227-202 - 748 4.5e-92 297.7 136.6 4 19 2e-06 0.002 18.5 6.1 1 23 301 323 301 323 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF227-202 - 748 4.5e-92 297.7 136.6 5 19 3.8e-06 0.0038 17.6 0.1 1 23 329 351 329 351 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF227-202 - 748 4.5e-92 297.7 136.6 6 19 2.8e-07 0.00028 21.2 1.9 1 23 357 379 357 379 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF227-202 - 748 4.5e-92 297.7 136.6 7 19 5.2e-05 0.052 14.0 3.0 1 23 385 407 385 407 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF227-202 - 748 4.5e-92 297.7 136.6 8 19 1.7e-06 0.0017 18.7 1.3 1 23 413 435 413 435 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF227-202 - 748 4.5e-92 297.7 136.6 9 19 1.7e-09 1.7e-06 28.2 0.2 1 23 441 463 441 463 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF227-202 - 748 4.5e-92 297.7 136.6 10 19 1.4e-08 1.4e-05 25.3 1.2 1 23 469 491 469 491 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF227-202 - 748 4.5e-92 297.7 136.6 11 19 8.9e-08 8.9e-05 22.7 0.5 1 23 497 519 497 519 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF227-202 - 748 4.5e-92 297.7 136.6 12 19 4.4e-07 0.00043 20.6 0.9 1 23 525 547 525 547 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF227-202 - 748 4.5e-92 297.7 136.6 13 19 3.8e-08 3.8e-05 23.9 0.6 1 23 553 575 553 575 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF227-202 - 748 4.5e-92 297.7 136.6 14 19 3.5e-09 3.5e-06 27.2 0.2 1 23 581 603 581 603 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF227-202 - 748 4.5e-92 297.7 136.6 15 19 3.2e-07 0.00032 21.0 1.1 1 23 609 631 609 631 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF227-202 - 748 4.5e-92 297.7 136.6 16 19 9.7e-08 9.7e-05 22.6 1.3 1 23 637 659 637 659 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF227-202 - 748 4.5e-92 297.7 136.6 17 19 6.2e-07 0.00062 20.1 0.1 1 23 665 687 665 687 0.93 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF227-202 - 748 4.5e-92 297.7 136.6 18 19 8.4e-08 8.4e-05 22.8 0.1 1 23 693 715 693 715 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF227-202 - 748 4.5e-92 297.7 136.6 19 19 2.8e-06 0.0028 18.0 4.1 1 23 721 743 721 743 0.99 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZNF227-202 - 748 2.6e-47 155.4 143.2 1 19 0.063 62 4.8 0.2 1 14 199 212 199 217 0.78 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF227-202 - 748 2.6e-47 155.4 143.2 2 19 0.12 1.2e+02 4.0 0.6 8 23 225 240 224 241 0.88 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF227-202 - 748 2.6e-47 155.4 143.2 3 19 3.2e-06 0.0032 18.2 0.3 1 23 273 295 273 296 0.97 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF227-202 - 748 2.6e-47 155.4 143.2 4 19 0.00098 0.97 10.4 6.1 1 23 301 323 301 324 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF227-202 - 748 2.6e-47 155.4 143.2 5 19 0.0015 1.5 9.9 0.3 1 23 329 351 329 352 0.83 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF227-202 - 748 2.6e-47 155.4 143.2 6 19 0.00053 0.52 11.3 1.9 1 23 357 379 357 380 0.90 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF227-202 - 748 2.6e-47 155.4 143.2 7 19 0.00026 0.26 12.2 2.5 1 23 385 407 385 408 0.91 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF227-202 - 748 2.6e-47 155.4 143.2 8 19 5e-05 0.05 14.5 0.8 1 23 413 435 413 436 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF227-202 - 748 2.6e-47 155.4 143.2 9 19 1.4e-05 0.014 16.2 0.4 1 23 441 463 441 464 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF227-202 - 748 2.6e-47 155.4 143.2 10 19 1.1e-05 0.011 16.5 1.2 1 23 469 491 469 492 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF227-202 - 748 2.6e-47 155.4 143.2 11 19 9e-05 0.089 13.7 0.4 1 23 497 519 497 520 0.91 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF227-202 - 748 2.6e-47 155.4 143.2 12 19 0.0002 0.2 12.6 1.2 1 23 525 547 525 548 0.91 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF227-202 - 748 2.6e-47 155.4 143.2 13 19 4.5e-05 0.045 14.6 0.7 1 23 553 575 553 576 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF227-202 - 748 2.6e-47 155.4 143.2 14 19 3.5e-06 0.0035 18.0 0.3 1 23 581 603 581 604 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF227-202 - 748 2.6e-47 155.4 143.2 15 19 4.9e-05 0.049 14.5 0.7 1 23 609 631 609 632 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF227-202 - 748 2.6e-47 155.4 143.2 16 19 1.7e-05 0.017 15.9 1.1 1 23 637 659 637 660 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF227-202 - 748 2.6e-47 155.4 143.2 17 19 0.00011 0.11 13.3 0.2 1 23 665 687 665 688 0.91 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF227-202 - 748 2.6e-47 155.4 143.2 18 19 1.6e-05 0.016 16.0 0.3 1 23 693 715 693 716 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF227-202 - 748 2.6e-47 155.4 143.2 19 19 0.00029 0.29 12.1 2.4 1 23 721 743 721 744 0.94 C2H2-type zinc finger zf-C2H2_jaz PF12171.8 27 ZNF227-202 - 748 1.6e-25 88.8 69.7 1 18 8 8e+03 -2.7 0.0 4 12 201 209 199 209 0.85 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF227-202 - 748 1.6e-25 88.8 69.7 2 18 0.0028 2.8 8.4 0.1 2 24 273 295 272 295 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF227-202 - 748 1.6e-25 88.8 69.7 3 18 3.5 3.5e+03 -1.5 4.8 2 21 301 320 300 321 0.84 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF227-202 - 748 1.6e-25 88.8 69.7 4 18 0.049 48 4.4 0.0 2 12 329 339 328 349 0.75 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF227-202 - 748 1.6e-25 88.8 69.7 5 18 0.036 36 4.8 0.5 2 21 357 376 356 377 0.80 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF227-202 - 748 1.6e-25 88.8 69.7 6 18 0.049 49 4.4 0.1 2 13 385 396 384 398 0.87 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF227-202 - 748 1.6e-25 88.8 69.7 7 18 0.0016 1.6 9.1 0.1 2 22 413 433 412 433 0.91 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF227-202 - 748 1.6e-25 88.8 69.7 8 18 0.00017 0.16 12.3 0.1 2 22 441 461 440 461 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF227-202 - 748 1.6e-25 88.8 69.7 9 18 0.00016 0.16 12.3 0.1 2 22 469 489 468 489 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF227-202 - 748 1.6e-25 88.8 69.7 10 18 0.021 21 5.6 0.1 2 20 497 515 496 516 0.90 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF227-202 - 748 1.6e-25 88.8 69.7 11 18 0.0053 5.3 7.4 0.1 2 22 525 545 524 545 0.89 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF227-202 - 748 1.6e-25 88.8 69.7 12 18 0.0003 0.3 11.4 0.5 2 22 553 573 552 573 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF227-202 - 748 1.6e-25 88.8 69.7 13 18 0.0091 9 6.7 0.0 2 22 581 601 580 601 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF227-202 - 748 1.6e-25 88.8 69.7 14 18 0.002 2 8.8 0.3 2 24 609 631 608 631 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF227-202 - 748 1.6e-25 88.8 69.7 15 18 0.0073 7.3 7.0 0.0 2 21 637 656 636 657 0.87 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF227-202 - 748 1.6e-25 88.8 69.7 16 18 0.027 26 5.2 0.0 2 21 665 684 664 684 0.87 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF227-202 - 748 1.6e-25 88.8 69.7 17 18 0.0011 1.1 9.6 0.0 2 22 693 713 692 713 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF227-202 - 748 1.6e-25 88.8 69.7 18 18 0.002 2 8.8 0.9 2 22 721 741 720 741 0.88 Zinc-finger double-stranded RNA-binding Zn-ribbon_8 PF09723.10 40 ZNF227-202 - 748 9.6e-14 51.2 101.3 1 17 0.96 9.6e+02 0.0 0.1 8 15 201 208 193 218 0.76 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF227-202 - 748 9.6e-14 51.2 101.3 2 17 0.0072 7.1 6.8 7.9 6 34 273 308 272 309 0.81 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF227-202 - 748 9.6e-14 51.2 101.3 3 17 0.12 1.2e+02 2.9 13.5 6 34 301 336 300 338 0.85 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF227-202 - 748 9.6e-14 51.2 101.3 4 17 0.00015 0.15 12.2 5.6 6 34 329 364 328 369 0.92 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF227-202 - 748 9.6e-14 51.2 101.3 5 17 0.00012 0.12 12.5 3.9 6 34 357 392 356 396 0.90 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF227-202 - 748 9.6e-14 51.2 101.3 6 17 0.0016 1.6 8.9 3.7 6 38 385 424 384 425 0.77 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF227-202 - 748 9.6e-14 51.2 101.3 7 17 0.00019 0.19 11.9 4.6 6 34 413 448 411 452 0.84 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF227-202 - 748 9.6e-14 51.2 101.3 8 17 0.00083 0.82 9.8 4.6 6 34 441 476 440 480 0.88 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF227-202 - 748 9.6e-14 51.2 101.3 9 17 0.00046 0.45 10.7 3.4 6 35 469 505 467 507 0.88 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF227-202 - 748 9.6e-14 51.2 101.3 10 17 7.3e-05 0.073 13.2 3.0 6 34 497 532 495 537 0.88 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF227-202 - 748 9.6e-14 51.2 101.3 11 17 0.00043 0.43 10.7 5.3 6 35 525 561 524 566 0.88 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF227-202 - 748 9.6e-14 51.2 101.3 12 17 0.00016 0.16 12.1 2.7 6 34 553 588 551 593 0.92 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF227-202 - 748 9.6e-14 51.2 101.3 13 17 0.00085 0.85 9.8 1.5 6 34 581 616 579 621 0.90 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF227-202 - 748 9.6e-14 51.2 101.3 14 17 0.089 88 3.3 0.3 6 16 609 619 607 625 0.88 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF227-202 - 748 9.6e-14 51.2 101.3 15 17 2.4e-05 0.024 14.8 2.2 6 34 637 672 636 675 0.92 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF227-202 - 748 9.6e-14 51.2 101.3 16 17 0.005 4.9 7.3 5.0 6 36 693 730 692 733 0.88 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF227-202 - 748 9.6e-14 51.2 101.3 17 17 0.094 94 3.3 0.3 6 19 721 734 719 740 0.86 Zinc ribbon domain zf_UBZ PF18439.1 32 ZNF227-202 - 748 2.6e-11 42.9 81.5 1 19 3 3e+03 -2.1 0.0 9 23 141 156 141 156 0.81 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF227-202 - 748 2.6e-11 42.9 81.5 2 19 0.72 7.1e+02 -0.1 0.1 3 12 199 208 198 215 0.83 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF227-202 - 748 2.6e-11 42.9 81.5 3 19 0.023 23 4.7 0.1 2 15 272 285 271 287 0.87 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF227-202 - 748 2.6e-11 42.9 81.5 4 19 0.00097 0.97 9.1 4.2 3 21 301 320 299 320 0.94 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF227-202 - 748 2.6e-11 42.9 81.5 5 19 0.03 30 4.3 0.3 3 10 329 336 327 339 0.86 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF227-202 - 748 2.6e-11 42.9 81.5 6 19 0.014 14 5.4 0.1 3 13 357 367 355 371 0.83 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF227-202 - 748 2.6e-11 42.9 81.5 7 19 0.12 1.2e+02 2.4 0.5 3 15 385 397 383 404 0.83 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF227-202 - 748 2.6e-11 42.9 81.5 8 19 0.11 1e+02 2.6 0.1 3 12 413 422 411 429 0.84 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF227-202 - 748 2.6e-11 42.9 81.5 9 19 0.0036 3.6 7.3 0.1 3 20 441 459 439 460 0.84 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF227-202 - 748 2.6e-11 42.9 81.5 10 19 0.00044 0.44 10.2 0.2 3 21 469 488 467 488 0.93 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF227-202 - 748 2.6e-11 42.9 81.5 11 19 0.28 2.8e+02 1.2 0.1 3 13 497 507 495 515 0.86 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF227-202 - 748 2.6e-11 42.9 81.5 12 19 0.012 12 5.6 0.1 3 13 525 535 523 544 0.85 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF227-202 - 748 2.6e-11 42.9 81.5 13 19 0.0017 1.7 8.3 0.3 3 20 553 571 551 572 0.83 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF227-202 - 748 2.6e-11 42.9 81.5 14 19 0.023 22 4.7 0.0 3 21 581 600 579 600 0.93 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF227-202 - 748 2.6e-11 42.9 81.5 15 19 0.38 3.8e+02 0.8 0.1 3 12 609 618 607 627 0.86 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF227-202 - 748 2.6e-11 42.9 81.5 16 19 0.018 18 5.0 0.1 3 12 637 646 635 656 0.82 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF227-202 - 748 2.6e-11 42.9 81.5 17 19 0.0092 9.2 6.0 0.1 3 15 665 677 663 684 0.83 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF227-202 - 748 2.6e-11 42.9 81.5 18 19 0.00066 0.66 9.6 0.1 3 19 693 709 691 712 0.82 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF227-202 - 748 2.6e-11 42.9 81.5 19 19 0.2 2e+02 1.7 0.1 3 12 721 730 719 739 0.83 Ubiquitin-Binding Zinc Finger zf-C2H2_6 PF13912.6 27 ZNF227-202 - 748 1.3e-10 41.0 132.5 1 20 0.16 1.6e+02 2.5 0.2 2 13 199 210 199 210 0.91 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF227-202 - 748 1.3e-10 41.0 132.5 2 20 5.4 5.4e+03 -2.4 0.2 20 26 232 238 231 239 0.81 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF227-202 - 748 1.3e-10 41.0 132.5 3 20 1.6 1.6e+03 -0.7 0.4 10 16 259 265 257 265 0.87 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF227-202 - 748 1.3e-10 41.0 132.5 4 20 7.4e-06 0.0074 16.3 0.4 2 24 273 295 272 298 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF227-202 - 748 1.3e-10 41.0 132.5 5 20 0.8 8e+02 0.2 4.3 2 12 301 311 301 312 0.90 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF227-202 - 748 1.3e-10 41.0 132.5 6 20 0.00043 0.43 10.6 0.3 2 26 329 353 329 354 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF227-202 - 748 1.3e-10 41.0 132.5 7 20 0.026 26 5.0 0.7 2 11 357 366 357 368 0.92 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF227-202 - 748 1.3e-10 41.0 132.5 8 20 0.002 2 8.5 1.3 2 12 385 395 385 407 0.90 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF227-202 - 748 1.3e-10 41.0 132.5 9 20 0.14 1.4e+02 2.6 0.2 2 13 413 424 413 433 0.85 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF227-202 - 748 1.3e-10 41.0 132.5 10 20 0.0013 1.3 9.1 0.4 2 12 441 451 441 459 0.90 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF227-202 - 748 1.3e-10 41.0 132.5 11 20 0.013 13 5.9 1.0 1 12 468 479 468 492 0.80 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF227-202 - 748 1.3e-10 41.0 132.5 12 20 0.00066 0.66 10.1 0.5 2 13 497 508 497 515 0.86 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF227-202 - 748 1.3e-10 41.0 132.5 13 20 0.011 11 6.1 0.8 2 12 525 535 525 550 0.76 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF227-202 - 748 1.3e-10 41.0 132.5 14 20 0.01 9.9 6.3 1.6 2 12 553 563 553 564 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF227-202 - 748 1.3e-10 41.0 132.5 15 20 0.031 30 4.7 0.8 2 13 581 592 581 604 0.78 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF227-202 - 748 1.3e-10 41.0 132.5 16 20 0.00062 0.62 10.1 0.5 2 13 609 620 609 621 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF227-202 - 748 1.3e-10 41.0 132.5 17 20 0.0029 2.9 8.0 1.6 2 24 637 659 637 662 0.88 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF227-202 - 748 1.3e-10 41.0 132.5 18 20 0.0065 6.5 6.9 0.1 2 12 665 675 665 684 0.87 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF227-202 - 748 1.3e-10 41.0 132.5 19 20 0.0074 7.3 6.7 0.4 2 12 693 703 692 716 0.81 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF227-202 - 748 1.3e-10 41.0 132.5 20 20 0.0054 5.4 7.1 0.5 2 12 721 731 721 733 0.93 C2H2-type zinc finger XPA_N PF01286.18 32 ZNF227-202 - 748 3.3e-09 36.6 85.4 1 18 0.38 3.7e+02 1.3 0.1 4 14 201 211 198 211 0.84 XPA protein N-terminal XPA_N PF01286.18 32 ZNF227-202 - 748 3.3e-09 36.6 85.4 2 18 0.025 25 5.0 0.4 3 14 274 285 273 286 0.90 XPA protein N-terminal XPA_N PF01286.18 32 ZNF227-202 - 748 3.3e-09 36.6 85.4 3 18 0.089 88 3.3 5.0 3 14 302 313 300 319 0.87 XPA protein N-terminal XPA_N PF01286.18 32 ZNF227-202 - 748 3.3e-09 36.6 85.4 4 18 0.0041 4.1 7.5 0.1 3 14 330 341 328 343 0.87 XPA protein N-terminal XPA_N PF01286.18 32 ZNF227-202 - 748 3.3e-09 36.6 85.4 5 18 0.0043 4.3 7.5 0.2 3 13 358 368 356 372 0.88 XPA protein N-terminal XPA_N PF01286.18 32 ZNF227-202 - 748 3.3e-09 36.6 85.4 6 18 0.18 1.8e+02 2.3 0.1 3 12 386 395 384 397 0.84 XPA protein N-terminal XPA_N PF01286.18 32 ZNF227-202 - 748 3.3e-09 36.6 85.4 7 18 0.11 1.1e+02 3.0 0.1 3 12 414 423 412 425 0.89 XPA protein N-terminal XPA_N PF01286.18 32 ZNF227-202 - 748 3.3e-09 36.6 85.4 8 18 0.0094 9.4 6.4 0.1 3 13 442 452 440 456 0.88 XPA protein N-terminal XPA_N PF01286.18 32 ZNF227-202 - 748 3.3e-09 36.6 85.4 9 18 0.012 12 6.1 0.3 3 14 470 481 468 487 0.84 XPA protein N-terminal XPA_N PF01286.18 32 ZNF227-202 - 748 3.3e-09 36.6 85.4 10 18 0.18 1.8e+02 2.3 0.1 3 14 498 509 496 510 0.82 XPA protein N-terminal XPA_N PF01286.18 32 ZNF227-202 - 748 3.3e-09 36.6 85.4 11 18 0.011 11 6.2 0.2 3 11 526 534 524 536 0.89 XPA protein N-terminal XPA_N PF01286.18 32 ZNF227-202 - 748 3.3e-09 36.6 85.4 12 18 0.041 41 4.3 0.3 3 13 554 564 552 566 0.87 XPA protein N-terminal XPA_N PF01286.18 32 ZNF227-202 - 748 3.3e-09 36.6 85.4 13 18 0.29 2.9e+02 1.6 0.1 3 14 582 593 580 595 0.89 XPA protein N-terminal XPA_N PF01286.18 32 ZNF227-202 - 748 3.3e-09 36.6 85.4 14 18 0.11 1.1e+02 2.9 0.1 3 14 610 621 608 622 0.83 XPA protein N-terminal XPA_N PF01286.18 32 ZNF227-202 - 748 3.3e-09 36.6 85.4 15 18 0.0012 1.2 9.2 0.0 3 14 638 649 636 655 0.87 XPA protein N-terminal XPA_N PF01286.18 32 ZNF227-202 - 748 3.3e-09 36.6 85.4 16 18 0.0097 9.7 6.3 0.2 3 11 666 674 664 676 0.87 XPA protein N-terminal XPA_N PF01286.18 32 ZNF227-202 - 748 3.3e-09 36.6 85.4 17 18 0.0019 1.9 8.6 0.5 3 14 694 705 693 708 0.93 XPA protein N-terminal XPA_N PF01286.18 32 ZNF227-202 - 748 3.3e-09 36.6 85.4 18 18 0.44 4.4e+02 1.0 0.3 3 10 722 729 719 734 0.66 XPA protein N-terminal C1_1 PF00130.22 53 ZNF227-202 - 748 5.8e-08 32.5 85.1 1 16 3.2 3.2e+03 -1.9 0.1 11 21 198 208 196 232 0.61 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF227-202 - 748 5.8e-08 32.5 85.1 2 16 0.00026 0.26 11.2 5.7 6 51 266 327 261 329 0.85 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF227-202 - 748 5.8e-08 32.5 85.1 3 16 0.08 79 3.2 8.6 3 35 292 335 291 339 0.76 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF227-202 - 748 5.8e-08 32.5 85.1 4 16 0.0025 2.5 8.0 2.1 1 35 319 363 319 364 0.86 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF227-202 - 748 5.8e-08 32.5 85.1 5 16 8.2e-05 0.081 12.8 3.8 1 50 347 410 347 412 0.86 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF227-202 - 748 5.8e-08 32.5 85.1 6 16 0.011 11 6.0 4.3 1 35 375 419 374 422 0.81 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF227-202 - 748 5.8e-08 32.5 85.1 7 16 0.12 1.2e+02 2.7 0.3 4 21 406 422 403 428 0.75 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF227-202 - 748 5.8e-08 32.5 85.1 8 16 0.00011 0.11 12.4 1.5 2 35 431 475 429 481 0.91 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF227-202 - 748 5.8e-08 32.5 85.1 9 16 0.015 15 5.6 1.7 1 35 459 503 459 506 0.78 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF227-202 - 748 5.8e-08 32.5 85.1 10 16 0.0025 2.5 8.0 0.9 1 35 487 531 487 534 0.83 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF227-202 - 748 5.8e-08 32.5 85.1 11 16 0.0041 4.1 7.4 2.7 1 36 515 560 515 565 0.81 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF227-202 - 748 5.8e-08 32.5 85.1 12 16 0.0074 7.4 6.5 2.4 5 35 547 587 541 588 0.77 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF227-202 - 748 5.8e-08 32.5 85.1 13 16 0.045 45 4.0 0.1 1 26 571 596 571 602 0.71 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF227-202 - 748 5.8e-08 32.5 85.1 14 16 0.00024 0.24 11.3 0.2 1 35 599 643 599 649 0.87 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF227-202 - 748 5.8e-08 32.5 85.1 15 16 0.0016 1.6 8.7 2.9 1 35 654 699 654 705 0.88 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF227-202 - 748 5.8e-08 32.5 85.1 16 16 0.067 67 3.5 0.7 1 23 711 732 711 745 0.73 Phorbol esters/diacylglycerol binding domain (C1 domain) # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF227-202.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF227-202.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF227-202.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF227-202.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF227-202.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:01:57 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF227-203.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF227-203.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF227-203.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF227-203.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF227-203.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:01:58 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF227-204.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF227-204.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF227-204.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF227-204.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF227-204.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:01:58 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF227-205.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF227-205.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF227-205.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF227-205.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF227-205.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:01:58 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF227-206.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF227-206.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF227-206.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF227-206.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF227-206.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:01:59 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF227-207.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF227-207.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF227-207.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF227-207.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF227-207.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:01:59 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZNF227-208 - 748 7.1e-134 430.9 153.8 1 21 0.004 4 8.1 0.3 11 25 195 209 193 210 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF227-208 - 748 7.1e-134 430.9 153.8 2 21 7.5 7.5e+03 -2.3 0.1 8 13 220 225 219 226 0.87 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF227-208 - 748 7.1e-134 430.9 153.8 3 21 0.012 12 6.6 2.0 1 17 232 248 232 257 0.81 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF227-208 - 748 7.1e-134 430.9 153.8 4 21 5.1e-07 0.00051 20.4 0.7 7 26 265 284 259 284 0.84 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF227-208 - 748 7.1e-134 430.9 153.8 5 21 6.8e-10 6.8e-07 29.4 1.9 5 25 291 311 287 312 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF227-208 - 748 7.1e-134 430.9 153.8 6 21 2.6e-08 2.6e-05 24.4 3.1 5 24 319 338 315 339 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF227-208 - 748 7.1e-134 430.9 153.8 7 21 1.6e-11 1.6e-08 34.6 0.5 1 25 343 367 343 368 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF227-208 - 748 7.1e-134 430.9 153.8 8 21 5.2e-10 5.2e-07 29.8 3.3 5 26 375 396 373 396 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF227-208 - 748 7.1e-134 430.9 153.8 9 21 3.6e-10 3.6e-07 30.3 1.7 5 26 403 424 403 424 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF227-208 - 748 7.1e-134 430.9 153.8 10 21 4.2e-10 4.2e-07 30.1 2.8 5 25 431 451 428 452 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF227-208 - 748 7.1e-134 430.9 153.8 11 21 2.8e-09 2.7e-06 27.5 0.3 1 25 455 479 455 480 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF227-208 - 748 7.1e-134 430.9 153.8 12 21 3.9e-11 3.9e-08 33.4 0.6 2 25 484 507 483 508 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF227-208 - 748 7.1e-134 430.9 153.8 13 21 8.9e-10 8.8e-07 29.1 0.3 1 25 511 535 511 535 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF227-208 - 748 7.1e-134 430.9 153.8 14 21 1.6e-10 1.6e-07 31.4 1.2 2 25 540 563 539 564 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF227-208 - 748 7.1e-134 430.9 153.8 15 21 1.5e-10 1.5e-07 31.5 0.3 2 25 568 591 567 592 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF227-208 - 748 7.1e-134 430.9 153.8 16 21 7.1e-12 7.1e-09 35.7 0.3 1 25 595 619 595 620 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF227-208 - 748 7.1e-134 430.9 153.8 17 21 2e-10 1.9e-07 31.2 1.1 4 25 626 647 624 648 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF227-208 - 748 7.1e-134 430.9 153.8 18 21 1.6e-09 1.6e-06 28.3 1.7 1 25 651 675 651 675 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF227-208 - 748 7.1e-134 430.9 153.8 19 21 6.4e-09 6.4e-06 26.4 0.2 1 25 679 703 679 704 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF227-208 - 748 7.1e-134 430.9 153.8 20 21 2.6e-11 2.6e-08 33.9 1.0 2 26 708 732 707 732 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF227-208 - 748 7.1e-134 430.9 153.8 21 21 0.0026 2.6 8.6 0.6 2 13 736 747 735 748 0.92 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZNF227-208 - 748 4.5e-92 297.7 136.6 1 19 0.017 17 6.1 0.1 1 13 199 211 199 217 0.87 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF227-208 - 748 4.5e-92 297.7 136.6 2 19 8.1e-05 0.08 13.4 0.7 8 23 225 240 223 240 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF227-208 - 748 4.5e-92 297.7 136.6 3 19 4.7e-07 0.00047 20.5 0.5 1 23 273 295 273 295 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF227-208 - 748 4.5e-92 297.7 136.6 4 19 2e-06 0.002 18.5 6.1 1 23 301 323 301 323 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF227-208 - 748 4.5e-92 297.7 136.6 5 19 3.8e-06 0.0038 17.6 0.1 1 23 329 351 329 351 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF227-208 - 748 4.5e-92 297.7 136.6 6 19 2.8e-07 0.00028 21.2 1.9 1 23 357 379 357 379 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF227-208 - 748 4.5e-92 297.7 136.6 7 19 5.2e-05 0.052 14.0 3.0 1 23 385 407 385 407 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF227-208 - 748 4.5e-92 297.7 136.6 8 19 1.7e-06 0.0017 18.7 1.3 1 23 413 435 413 435 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF227-208 - 748 4.5e-92 297.7 136.6 9 19 1.7e-09 1.7e-06 28.2 0.2 1 23 441 463 441 463 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF227-208 - 748 4.5e-92 297.7 136.6 10 19 1.4e-08 1.4e-05 25.3 1.2 1 23 469 491 469 491 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF227-208 - 748 4.5e-92 297.7 136.6 11 19 8.9e-08 8.9e-05 22.7 0.5 1 23 497 519 497 519 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF227-208 - 748 4.5e-92 297.7 136.6 12 19 4.4e-07 0.00043 20.6 0.9 1 23 525 547 525 547 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF227-208 - 748 4.5e-92 297.7 136.6 13 19 3.8e-08 3.8e-05 23.9 0.6 1 23 553 575 553 575 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF227-208 - 748 4.5e-92 297.7 136.6 14 19 3.5e-09 3.5e-06 27.2 0.2 1 23 581 603 581 603 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF227-208 - 748 4.5e-92 297.7 136.6 15 19 3.2e-07 0.00032 21.0 1.1 1 23 609 631 609 631 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF227-208 - 748 4.5e-92 297.7 136.6 16 19 9.7e-08 9.7e-05 22.6 1.3 1 23 637 659 637 659 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF227-208 - 748 4.5e-92 297.7 136.6 17 19 6.2e-07 0.00062 20.1 0.1 1 23 665 687 665 687 0.93 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF227-208 - 748 4.5e-92 297.7 136.6 18 19 8.4e-08 8.4e-05 22.8 0.1 1 23 693 715 693 715 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF227-208 - 748 4.5e-92 297.7 136.6 19 19 2.8e-06 0.0028 18.0 4.1 1 23 721 743 721 743 0.99 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZNF227-208 - 748 2.6e-47 155.4 143.2 1 19 0.063 62 4.8 0.2 1 14 199 212 199 217 0.78 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF227-208 - 748 2.6e-47 155.4 143.2 2 19 0.12 1.2e+02 4.0 0.6 8 23 225 240 224 241 0.88 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF227-208 - 748 2.6e-47 155.4 143.2 3 19 3.2e-06 0.0032 18.2 0.3 1 23 273 295 273 296 0.97 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF227-208 - 748 2.6e-47 155.4 143.2 4 19 0.00098 0.97 10.4 6.1 1 23 301 323 301 324 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF227-208 - 748 2.6e-47 155.4 143.2 5 19 0.0015 1.5 9.9 0.3 1 23 329 351 329 352 0.83 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF227-208 - 748 2.6e-47 155.4 143.2 6 19 0.00053 0.52 11.3 1.9 1 23 357 379 357 380 0.90 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF227-208 - 748 2.6e-47 155.4 143.2 7 19 0.00026 0.26 12.2 2.5 1 23 385 407 385 408 0.91 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF227-208 - 748 2.6e-47 155.4 143.2 8 19 5e-05 0.05 14.5 0.8 1 23 413 435 413 436 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF227-208 - 748 2.6e-47 155.4 143.2 9 19 1.4e-05 0.014 16.2 0.4 1 23 441 463 441 464 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF227-208 - 748 2.6e-47 155.4 143.2 10 19 1.1e-05 0.011 16.5 1.2 1 23 469 491 469 492 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF227-208 - 748 2.6e-47 155.4 143.2 11 19 9e-05 0.089 13.7 0.4 1 23 497 519 497 520 0.91 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF227-208 - 748 2.6e-47 155.4 143.2 12 19 0.0002 0.2 12.6 1.2 1 23 525 547 525 548 0.91 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF227-208 - 748 2.6e-47 155.4 143.2 13 19 4.5e-05 0.045 14.6 0.7 1 23 553 575 553 576 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF227-208 - 748 2.6e-47 155.4 143.2 14 19 3.5e-06 0.0035 18.0 0.3 1 23 581 603 581 604 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF227-208 - 748 2.6e-47 155.4 143.2 15 19 4.9e-05 0.049 14.5 0.7 1 23 609 631 609 632 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF227-208 - 748 2.6e-47 155.4 143.2 16 19 1.7e-05 0.017 15.9 1.1 1 23 637 659 637 660 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF227-208 - 748 2.6e-47 155.4 143.2 17 19 0.00011 0.11 13.3 0.2 1 23 665 687 665 688 0.91 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF227-208 - 748 2.6e-47 155.4 143.2 18 19 1.6e-05 0.016 16.0 0.3 1 23 693 715 693 716 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF227-208 - 748 2.6e-47 155.4 143.2 19 19 0.00029 0.29 12.1 2.4 1 23 721 743 721 744 0.94 C2H2-type zinc finger zf-C2H2_jaz PF12171.8 27 ZNF227-208 - 748 1.6e-25 88.8 69.7 1 18 8 8e+03 -2.7 0.0 4 12 201 209 199 209 0.85 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF227-208 - 748 1.6e-25 88.8 69.7 2 18 0.0028 2.8 8.4 0.1 2 24 273 295 272 295 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF227-208 - 748 1.6e-25 88.8 69.7 3 18 3.5 3.5e+03 -1.5 4.8 2 21 301 320 300 321 0.84 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF227-208 - 748 1.6e-25 88.8 69.7 4 18 0.049 48 4.4 0.0 2 12 329 339 328 349 0.75 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF227-208 - 748 1.6e-25 88.8 69.7 5 18 0.036 36 4.8 0.5 2 21 357 376 356 377 0.80 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF227-208 - 748 1.6e-25 88.8 69.7 6 18 0.049 49 4.4 0.1 2 13 385 396 384 398 0.87 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF227-208 - 748 1.6e-25 88.8 69.7 7 18 0.0016 1.6 9.1 0.1 2 22 413 433 412 433 0.91 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF227-208 - 748 1.6e-25 88.8 69.7 8 18 0.00017 0.16 12.3 0.1 2 22 441 461 440 461 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF227-208 - 748 1.6e-25 88.8 69.7 9 18 0.00016 0.16 12.3 0.1 2 22 469 489 468 489 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF227-208 - 748 1.6e-25 88.8 69.7 10 18 0.021 21 5.6 0.1 2 20 497 515 496 516 0.90 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF227-208 - 748 1.6e-25 88.8 69.7 11 18 0.0053 5.3 7.4 0.1 2 22 525 545 524 545 0.89 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF227-208 - 748 1.6e-25 88.8 69.7 12 18 0.0003 0.3 11.4 0.5 2 22 553 573 552 573 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF227-208 - 748 1.6e-25 88.8 69.7 13 18 0.0091 9 6.7 0.0 2 22 581 601 580 601 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF227-208 - 748 1.6e-25 88.8 69.7 14 18 0.002 2 8.8 0.3 2 24 609 631 608 631 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF227-208 - 748 1.6e-25 88.8 69.7 15 18 0.0073 7.3 7.0 0.0 2 21 637 656 636 657 0.87 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF227-208 - 748 1.6e-25 88.8 69.7 16 18 0.027 26 5.2 0.0 2 21 665 684 664 684 0.87 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF227-208 - 748 1.6e-25 88.8 69.7 17 18 0.0011 1.1 9.6 0.0 2 22 693 713 692 713 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF227-208 - 748 1.6e-25 88.8 69.7 18 18 0.002 2 8.8 0.9 2 22 721 741 720 741 0.88 Zinc-finger double-stranded RNA-binding Zn-ribbon_8 PF09723.10 40 ZNF227-208 - 748 9.6e-14 51.2 101.3 1 17 0.96 9.6e+02 0.0 0.1 8 15 201 208 193 218 0.76 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF227-208 - 748 9.6e-14 51.2 101.3 2 17 0.0072 7.1 6.8 7.9 6 34 273 308 272 309 0.81 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF227-208 - 748 9.6e-14 51.2 101.3 3 17 0.12 1.2e+02 2.9 13.5 6 34 301 336 300 338 0.85 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF227-208 - 748 9.6e-14 51.2 101.3 4 17 0.00015 0.15 12.2 5.6 6 34 329 364 328 369 0.92 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF227-208 - 748 9.6e-14 51.2 101.3 5 17 0.00012 0.12 12.5 3.9 6 34 357 392 356 396 0.90 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF227-208 - 748 9.6e-14 51.2 101.3 6 17 0.0016 1.6 8.9 3.7 6 38 385 424 384 425 0.77 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF227-208 - 748 9.6e-14 51.2 101.3 7 17 0.00019 0.19 11.9 4.6 6 34 413 448 411 452 0.84 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF227-208 - 748 9.6e-14 51.2 101.3 8 17 0.00083 0.82 9.8 4.6 6 34 441 476 440 480 0.88 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF227-208 - 748 9.6e-14 51.2 101.3 9 17 0.00046 0.45 10.7 3.4 6 35 469 505 467 507 0.88 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF227-208 - 748 9.6e-14 51.2 101.3 10 17 7.3e-05 0.073 13.2 3.0 6 34 497 532 495 537 0.88 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF227-208 - 748 9.6e-14 51.2 101.3 11 17 0.00043 0.43 10.7 5.3 6 35 525 561 524 566 0.88 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF227-208 - 748 9.6e-14 51.2 101.3 12 17 0.00016 0.16 12.1 2.7 6 34 553 588 551 593 0.92 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF227-208 - 748 9.6e-14 51.2 101.3 13 17 0.00085 0.85 9.8 1.5 6 34 581 616 579 621 0.90 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF227-208 - 748 9.6e-14 51.2 101.3 14 17 0.089 88 3.3 0.3 6 16 609 619 607 625 0.88 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF227-208 - 748 9.6e-14 51.2 101.3 15 17 2.4e-05 0.024 14.8 2.2 6 34 637 672 636 675 0.92 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF227-208 - 748 9.6e-14 51.2 101.3 16 17 0.005 4.9 7.3 5.0 6 36 693 730 692 733 0.88 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF227-208 - 748 9.6e-14 51.2 101.3 17 17 0.094 94 3.3 0.3 6 19 721 734 719 740 0.86 Zinc ribbon domain zf_UBZ PF18439.1 32 ZNF227-208 - 748 2.6e-11 42.9 81.5 1 19 3 3e+03 -2.1 0.0 9 23 141 156 141 156 0.81 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF227-208 - 748 2.6e-11 42.9 81.5 2 19 0.72 7.1e+02 -0.1 0.1 3 12 199 208 198 215 0.83 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF227-208 - 748 2.6e-11 42.9 81.5 3 19 0.023 23 4.7 0.1 2 15 272 285 271 287 0.87 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF227-208 - 748 2.6e-11 42.9 81.5 4 19 0.00097 0.97 9.1 4.2 3 21 301 320 299 320 0.94 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF227-208 - 748 2.6e-11 42.9 81.5 5 19 0.03 30 4.3 0.3 3 10 329 336 327 339 0.86 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF227-208 - 748 2.6e-11 42.9 81.5 6 19 0.014 14 5.4 0.1 3 13 357 367 355 371 0.83 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF227-208 - 748 2.6e-11 42.9 81.5 7 19 0.12 1.2e+02 2.4 0.5 3 15 385 397 383 404 0.83 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF227-208 - 748 2.6e-11 42.9 81.5 8 19 0.11 1e+02 2.6 0.1 3 12 413 422 411 429 0.84 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF227-208 - 748 2.6e-11 42.9 81.5 9 19 0.0036 3.6 7.3 0.1 3 20 441 459 439 460 0.84 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF227-208 - 748 2.6e-11 42.9 81.5 10 19 0.00044 0.44 10.2 0.2 3 21 469 488 467 488 0.93 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF227-208 - 748 2.6e-11 42.9 81.5 11 19 0.28 2.8e+02 1.2 0.1 3 13 497 507 495 515 0.86 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF227-208 - 748 2.6e-11 42.9 81.5 12 19 0.012 12 5.6 0.1 3 13 525 535 523 544 0.85 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF227-208 - 748 2.6e-11 42.9 81.5 13 19 0.0017 1.7 8.3 0.3 3 20 553 571 551 572 0.83 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF227-208 - 748 2.6e-11 42.9 81.5 14 19 0.023 22 4.7 0.0 3 21 581 600 579 600 0.93 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF227-208 - 748 2.6e-11 42.9 81.5 15 19 0.38 3.8e+02 0.8 0.1 3 12 609 618 607 627 0.86 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF227-208 - 748 2.6e-11 42.9 81.5 16 19 0.018 18 5.0 0.1 3 12 637 646 635 656 0.82 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF227-208 - 748 2.6e-11 42.9 81.5 17 19 0.0092 9.2 6.0 0.1 3 15 665 677 663 684 0.83 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF227-208 - 748 2.6e-11 42.9 81.5 18 19 0.00066 0.66 9.6 0.1 3 19 693 709 691 712 0.82 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF227-208 - 748 2.6e-11 42.9 81.5 19 19 0.2 2e+02 1.7 0.1 3 12 721 730 719 739 0.83 Ubiquitin-Binding Zinc Finger zf-C2H2_6 PF13912.6 27 ZNF227-208 - 748 1.3e-10 41.0 132.5 1 20 0.16 1.6e+02 2.5 0.2 2 13 199 210 199 210 0.91 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF227-208 - 748 1.3e-10 41.0 132.5 2 20 5.4 5.4e+03 -2.4 0.2 20 26 232 238 231 239 0.81 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF227-208 - 748 1.3e-10 41.0 132.5 3 20 1.6 1.6e+03 -0.7 0.4 10 16 259 265 257 265 0.87 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF227-208 - 748 1.3e-10 41.0 132.5 4 20 7.4e-06 0.0074 16.3 0.4 2 24 273 295 272 298 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF227-208 - 748 1.3e-10 41.0 132.5 5 20 0.8 8e+02 0.2 4.3 2 12 301 311 301 312 0.90 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF227-208 - 748 1.3e-10 41.0 132.5 6 20 0.00043 0.43 10.6 0.3 2 26 329 353 329 354 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF227-208 - 748 1.3e-10 41.0 132.5 7 20 0.026 26 5.0 0.7 2 11 357 366 357 368 0.92 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF227-208 - 748 1.3e-10 41.0 132.5 8 20 0.002 2 8.5 1.3 2 12 385 395 385 407 0.90 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF227-208 - 748 1.3e-10 41.0 132.5 9 20 0.14 1.4e+02 2.6 0.2 2 13 413 424 413 433 0.85 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF227-208 - 748 1.3e-10 41.0 132.5 10 20 0.0013 1.3 9.1 0.4 2 12 441 451 441 459 0.90 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF227-208 - 748 1.3e-10 41.0 132.5 11 20 0.013 13 5.9 1.0 1 12 468 479 468 492 0.80 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF227-208 - 748 1.3e-10 41.0 132.5 12 20 0.00066 0.66 10.1 0.5 2 13 497 508 497 515 0.86 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF227-208 - 748 1.3e-10 41.0 132.5 13 20 0.011 11 6.1 0.8 2 12 525 535 525 550 0.76 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF227-208 - 748 1.3e-10 41.0 132.5 14 20 0.01 9.9 6.3 1.6 2 12 553 563 553 564 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF227-208 - 748 1.3e-10 41.0 132.5 15 20 0.031 30 4.7 0.8 2 13 581 592 581 604 0.78 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF227-208 - 748 1.3e-10 41.0 132.5 16 20 0.00062 0.62 10.1 0.5 2 13 609 620 609 621 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF227-208 - 748 1.3e-10 41.0 132.5 17 20 0.0029 2.9 8.0 1.6 2 24 637 659 637 662 0.88 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF227-208 - 748 1.3e-10 41.0 132.5 18 20 0.0065 6.5 6.9 0.1 2 12 665 675 665 684 0.87 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF227-208 - 748 1.3e-10 41.0 132.5 19 20 0.0074 7.3 6.7 0.4 2 12 693 703 692 716 0.81 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF227-208 - 748 1.3e-10 41.0 132.5 20 20 0.0054 5.4 7.1 0.5 2 12 721 731 721 733 0.93 C2H2-type zinc finger XPA_N PF01286.18 32 ZNF227-208 - 748 3.3e-09 36.6 85.4 1 18 0.38 3.7e+02 1.3 0.1 4 14 201 211 198 211 0.84 XPA protein N-terminal XPA_N PF01286.18 32 ZNF227-208 - 748 3.3e-09 36.6 85.4 2 18 0.025 25 5.0 0.4 3 14 274 285 273 286 0.90 XPA protein N-terminal XPA_N PF01286.18 32 ZNF227-208 - 748 3.3e-09 36.6 85.4 3 18 0.089 88 3.3 5.0 3 14 302 313 300 319 0.87 XPA protein N-terminal XPA_N PF01286.18 32 ZNF227-208 - 748 3.3e-09 36.6 85.4 4 18 0.0041 4.1 7.5 0.1 3 14 330 341 328 343 0.87 XPA protein N-terminal XPA_N PF01286.18 32 ZNF227-208 - 748 3.3e-09 36.6 85.4 5 18 0.0043 4.3 7.5 0.2 3 13 358 368 356 372 0.88 XPA protein N-terminal XPA_N PF01286.18 32 ZNF227-208 - 748 3.3e-09 36.6 85.4 6 18 0.18 1.8e+02 2.3 0.1 3 12 386 395 384 397 0.84 XPA protein N-terminal XPA_N PF01286.18 32 ZNF227-208 - 748 3.3e-09 36.6 85.4 7 18 0.11 1.1e+02 3.0 0.1 3 12 414 423 412 425 0.89 XPA protein N-terminal XPA_N PF01286.18 32 ZNF227-208 - 748 3.3e-09 36.6 85.4 8 18 0.0094 9.4 6.4 0.1 3 13 442 452 440 456 0.88 XPA protein N-terminal XPA_N PF01286.18 32 ZNF227-208 - 748 3.3e-09 36.6 85.4 9 18 0.012 12 6.1 0.3 3 14 470 481 468 487 0.84 XPA protein N-terminal XPA_N PF01286.18 32 ZNF227-208 - 748 3.3e-09 36.6 85.4 10 18 0.18 1.8e+02 2.3 0.1 3 14 498 509 496 510 0.82 XPA protein N-terminal XPA_N PF01286.18 32 ZNF227-208 - 748 3.3e-09 36.6 85.4 11 18 0.011 11 6.2 0.2 3 11 526 534 524 536 0.89 XPA protein N-terminal XPA_N PF01286.18 32 ZNF227-208 - 748 3.3e-09 36.6 85.4 12 18 0.041 41 4.3 0.3 3 13 554 564 552 566 0.87 XPA protein N-terminal XPA_N PF01286.18 32 ZNF227-208 - 748 3.3e-09 36.6 85.4 13 18 0.29 2.9e+02 1.6 0.1 3 14 582 593 580 595 0.89 XPA protein N-terminal XPA_N PF01286.18 32 ZNF227-208 - 748 3.3e-09 36.6 85.4 14 18 0.11 1.1e+02 2.9 0.1 3 14 610 621 608 622 0.83 XPA protein N-terminal XPA_N PF01286.18 32 ZNF227-208 - 748 3.3e-09 36.6 85.4 15 18 0.0012 1.2 9.2 0.0 3 14 638 649 636 655 0.87 XPA protein N-terminal XPA_N PF01286.18 32 ZNF227-208 - 748 3.3e-09 36.6 85.4 16 18 0.0097 9.7 6.3 0.2 3 11 666 674 664 676 0.87 XPA protein N-terminal XPA_N PF01286.18 32 ZNF227-208 - 748 3.3e-09 36.6 85.4 17 18 0.0019 1.9 8.6 0.5 3 14 694 705 693 708 0.93 XPA protein N-terminal XPA_N PF01286.18 32 ZNF227-208 - 748 3.3e-09 36.6 85.4 18 18 0.44 4.4e+02 1.0 0.3 3 10 722 729 719 734 0.66 XPA protein N-terminal C1_1 PF00130.22 53 ZNF227-208 - 748 5.8e-08 32.5 85.1 1 16 3.2 3.2e+03 -1.9 0.1 11 21 198 208 196 232 0.61 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF227-208 - 748 5.8e-08 32.5 85.1 2 16 0.00026 0.26 11.2 5.7 6 51 266 327 261 329 0.85 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF227-208 - 748 5.8e-08 32.5 85.1 3 16 0.08 79 3.2 8.6 3 35 292 335 291 339 0.76 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF227-208 - 748 5.8e-08 32.5 85.1 4 16 0.0025 2.5 8.0 2.1 1 35 319 363 319 364 0.86 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF227-208 - 748 5.8e-08 32.5 85.1 5 16 8.2e-05 0.081 12.8 3.8 1 50 347 410 347 412 0.86 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF227-208 - 748 5.8e-08 32.5 85.1 6 16 0.011 11 6.0 4.3 1 35 375 419 374 422 0.81 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF227-208 - 748 5.8e-08 32.5 85.1 7 16 0.12 1.2e+02 2.7 0.3 4 21 406 422 403 428 0.75 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF227-208 - 748 5.8e-08 32.5 85.1 8 16 0.00011 0.11 12.4 1.5 2 35 431 475 429 481 0.91 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF227-208 - 748 5.8e-08 32.5 85.1 9 16 0.015 15 5.6 1.7 1 35 459 503 459 506 0.78 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF227-208 - 748 5.8e-08 32.5 85.1 10 16 0.0025 2.5 8.0 0.9 1 35 487 531 487 534 0.83 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF227-208 - 748 5.8e-08 32.5 85.1 11 16 0.0041 4.1 7.4 2.7 1 36 515 560 515 565 0.81 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF227-208 - 748 5.8e-08 32.5 85.1 12 16 0.0074 7.4 6.5 2.4 5 35 547 587 541 588 0.77 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF227-208 - 748 5.8e-08 32.5 85.1 13 16 0.045 45 4.0 0.1 1 26 571 596 571 602 0.71 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF227-208 - 748 5.8e-08 32.5 85.1 14 16 0.00024 0.24 11.3 0.2 1 35 599 643 599 649 0.87 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF227-208 - 748 5.8e-08 32.5 85.1 15 16 0.0016 1.6 8.7 2.9 1 35 654 699 654 705 0.88 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF227-208 - 748 5.8e-08 32.5 85.1 16 16 0.067 67 3.5 0.7 1 23 711 732 711 745 0.73 Phorbol esters/diacylglycerol binding domain (C1 domain) # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF227-208.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF227-208.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF227-208.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF227-208.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF227-208.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:02:00 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF227-209.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF227-209.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF227-209.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF227-209.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF227-209.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:02:00 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF227-210.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF227-210.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF227-210.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF227-210.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF227-210.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:02:00 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF227-211.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF227-211.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF227-211.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF227-211.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF227-211.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:02:01 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF227-212.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF227-212.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF227-212.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF227-212.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF227-212.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:02:01 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZNF227-213 - 799 5.2e-133 428.1 154.4 1 21 0.0043 4.3 7.9 0.3 11 25 246 260 244 261 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF227-213 - 799 5.2e-133 428.1 154.4 2 21 9.2 9.1e+03 -2.6 0.1 8 13 271 276 270 276 0.87 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF227-213 - 799 5.2e-133 428.1 154.4 3 21 0.013 13 6.5 2.0 1 17 283 299 283 308 0.81 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF227-213 - 799 5.2e-133 428.1 154.4 4 21 5.5e-07 0.00055 20.2 0.7 7 26 316 335 310 335 0.84 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF227-213 - 799 5.2e-133 428.1 154.4 5 21 7.4e-10 7.4e-07 29.3 1.9 5 25 342 362 338 363 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF227-213 - 799 5.2e-133 428.1 154.4 6 21 2.8e-08 2.8e-05 24.3 3.1 5 24 370 389 366 390 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF227-213 - 799 5.2e-133 428.1 154.4 7 21 1.7e-11 1.7e-08 34.5 0.5 1 25 394 418 394 419 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF227-213 - 799 5.2e-133 428.1 154.4 8 21 5.6e-10 5.6e-07 29.7 3.3 5 26 426 447 424 447 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF227-213 - 799 5.2e-133 428.1 154.4 9 21 3.9e-10 3.9e-07 30.2 1.7 5 26 454 475 454 475 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF227-213 - 799 5.2e-133 428.1 154.4 10 21 4.6e-10 4.6e-07 30.0 2.8 5 25 482 502 479 503 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF227-213 - 799 5.2e-133 428.1 154.4 11 21 3e-09 3e-06 27.4 0.3 1 25 506 530 506 531 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF227-213 - 799 5.2e-133 428.1 154.4 12 21 4.3e-11 4.2e-08 33.2 0.6 2 25 535 558 534 559 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF227-213 - 799 5.2e-133 428.1 154.4 13 21 9.6e-10 9.5e-07 29.0 0.3 1 25 562 586 562 586 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF227-213 - 799 5.2e-133 428.1 154.4 14 21 1.8e-10 1.7e-07 31.3 1.2 2 25 591 614 590 615 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF227-213 - 799 5.2e-133 428.1 154.4 15 21 1.7e-10 1.7e-07 31.4 0.3 2 25 619 642 618 643 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF227-213 - 799 5.2e-133 428.1 154.4 16 21 7.7e-12 7.7e-09 35.6 0.3 1 25 646 670 646 671 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF227-213 - 799 5.2e-133 428.1 154.4 17 21 2.1e-10 2.1e-07 31.0 1.1 4 25 677 698 675 699 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF227-213 - 799 5.2e-133 428.1 154.4 18 21 1.7e-09 1.7e-06 28.2 1.7 1 25 702 726 702 726 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF227-213 - 799 5.2e-133 428.1 154.4 19 21 7e-09 6.9e-06 26.2 0.2 1 25 730 754 730 755 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF227-213 - 799 5.2e-133 428.1 154.4 20 21 2.8e-11 2.8e-08 33.8 1.0 2 26 759 783 758 783 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF227-213 - 799 5.2e-133 428.1 154.4 21 21 0.0028 2.8 8.5 0.6 2 13 787 798 786 799 0.92 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZNF227-213 - 799 1.9e-91 295.7 136.6 1 19 0.019 19 6.0 0.1 1 13 250 262 250 268 0.87 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF227-213 - 799 1.9e-91 295.7 136.6 2 19 8.7e-05 0.087 13.3 0.7 8 23 276 291 274 291 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF227-213 - 799 1.9e-91 295.7 136.6 3 19 5e-07 0.0005 20.4 0.5 1 23 324 346 324 346 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF227-213 - 799 1.9e-91 295.7 136.6 4 19 2.1e-06 0.0021 18.4 6.1 1 23 352 374 352 374 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF227-213 - 799 1.9e-91 295.7 136.6 5 19 4.1e-06 0.0041 17.5 0.1 1 23 380 402 380 402 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF227-213 - 799 1.9e-91 295.7 136.6 6 19 3e-07 0.0003 21.1 1.9 1 23 408 430 408 430 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF227-213 - 799 1.9e-91 295.7 136.6 7 19 5.6e-05 0.056 13.9 3.0 1 23 436 458 436 458 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF227-213 - 799 1.9e-91 295.7 136.6 8 19 1.9e-06 0.0019 18.6 1.3 1 23 464 486 464 486 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF227-213 - 799 1.9e-91 295.7 136.6 9 19 1.8e-09 1.8e-06 28.1 0.2 1 23 492 514 492 514 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF227-213 - 799 1.9e-91 295.7 136.6 10 19 1.5e-08 1.5e-05 25.2 1.2 1 23 520 542 520 542 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF227-213 - 799 1.9e-91 295.7 136.6 11 19 9.6e-08 9.6e-05 22.6 0.5 1 23 548 570 548 570 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF227-213 - 799 1.9e-91 295.7 136.6 12 19 4.7e-07 0.00047 20.5 0.9 1 23 576 598 576 598 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF227-213 - 799 1.9e-91 295.7 136.6 13 19 4.1e-08 4.1e-05 23.8 0.6 1 23 604 626 604 626 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF227-213 - 799 1.9e-91 295.7 136.6 14 19 3.8e-09 3.8e-06 27.1 0.2 1 23 632 654 632 654 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF227-213 - 799 1.9e-91 295.7 136.6 15 19 3.5e-07 0.00035 20.9 1.1 1 23 660 682 660 682 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF227-213 - 799 1.9e-91 295.7 136.6 16 19 1e-07 0.0001 22.5 1.3 1 23 688 710 688 710 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF227-213 - 799 1.9e-91 295.7 136.6 17 19 6.7e-07 0.00066 20.0 0.1 1 23 716 738 716 738 0.93 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF227-213 - 799 1.9e-91 295.7 136.6 18 19 9.1e-08 9.1e-05 22.7 0.1 1 23 744 766 744 766 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF227-213 - 799 1.9e-91 295.7 136.6 19 19 3.1e-06 0.0031 17.9 4.1 1 23 772 794 772 794 0.99 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZNF227-213 - 799 1.1e-46 153.4 143.2 1 19 0.068 67 4.7 0.2 1 14 250 263 250 268 0.78 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF227-213 - 799 1.1e-46 153.4 143.2 2 19 0.13 1.3e+02 3.9 0.6 8 23 276 291 275 292 0.88 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF227-213 - 799 1.1e-46 153.4 143.2 3 19 3.5e-06 0.0035 18.1 0.3 1 23 324 346 324 347 0.97 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF227-213 - 799 1.1e-46 153.4 143.2 4 19 0.0011 1.1 10.3 6.1 1 23 352 374 352 375 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF227-213 - 799 1.1e-46 153.4 143.2 5 19 0.0016 1.6 9.8 0.3 1 23 380 402 380 403 0.83 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF227-213 - 799 1.1e-46 153.4 143.2 6 19 0.00057 0.57 11.2 1.9 1 23 408 430 408 431 0.90 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF227-213 - 799 1.1e-46 153.4 143.2 7 19 0.00029 0.28 12.1 2.5 1 23 436 458 436 459 0.91 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF227-213 - 799 1.1e-46 153.4 143.2 8 19 5.4e-05 0.054 14.4 0.8 1 23 464 486 464 487 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF227-213 - 799 1.1e-46 153.4 143.2 9 19 1.5e-05 0.015 16.1 0.4 1 23 492 514 492 515 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF227-213 - 799 1.1e-46 153.4 143.2 10 19 1.2e-05 0.012 16.4 1.2 1 23 520 542 520 543 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF227-213 - 799 1.1e-46 153.4 143.2 11 19 9.7e-05 0.097 13.6 0.4 1 23 548 570 548 571 0.91 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF227-213 - 799 1.1e-46 153.4 143.2 12 19 0.00021 0.21 12.5 1.2 1 23 576 598 576 599 0.91 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF227-213 - 799 1.1e-46 153.4 143.2 13 19 4.9e-05 0.049 14.5 0.7 1 23 604 626 604 627 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF227-213 - 799 1.1e-46 153.4 143.2 14 19 3.8e-06 0.0038 17.9 0.3 1 23 632 654 632 655 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF227-213 - 799 1.1e-46 153.4 143.2 15 19 5.3e-05 0.053 14.4 0.7 1 23 660 682 660 683 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF227-213 - 799 1.1e-46 153.4 143.2 16 19 1.8e-05 0.018 15.8 1.1 1 23 688 710 688 711 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF227-213 - 799 1.1e-46 153.4 143.2 17 19 0.00012 0.12 13.2 0.2 1 23 716 738 716 739 0.91 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF227-213 - 799 1.1e-46 153.4 143.2 18 19 1.7e-05 0.017 15.9 0.3 1 23 744 766 744 767 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF227-213 - 799 1.1e-46 153.4 143.2 19 19 0.00032 0.32 12.0 2.4 1 23 772 794 772 795 0.94 C2H2-type zinc finger zf-C2H2_jaz PF12171.8 27 ZNF227-213 - 799 5.7e-25 87.0 69.7 1 18 8.6 8.6e+03 -2.8 0.0 4 12 252 260 250 260 0.85 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF227-213 - 799 5.7e-25 87.0 69.7 2 18 0.003 3 8.3 0.1 2 24 324 346 323 346 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF227-213 - 799 5.7e-25 87.0 69.7 3 18 3.8 3.7e+03 -1.6 4.8 2 21 352 371 351 372 0.84 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF227-213 - 799 5.7e-25 87.0 69.7 4 18 0.052 52 4.3 0.0 2 12 380 390 379 400 0.75 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF227-213 - 799 5.7e-25 87.0 69.7 5 18 0.039 39 4.7 0.5 2 21 408 427 407 428 0.80 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF227-213 - 799 5.7e-25 87.0 69.7 6 18 0.053 53 4.3 0.1 2 13 436 447 435 449 0.87 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF227-213 - 799 5.7e-25 87.0 69.7 7 18 0.0017 1.7 9.0 0.1 2 22 464 484 463 484 0.91 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF227-213 - 799 5.7e-25 87.0 69.7 8 18 0.00018 0.18 12.2 0.1 2 22 492 512 491 512 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF227-213 - 799 5.7e-25 87.0 69.7 9 18 0.00017 0.17 12.2 0.1 2 22 520 540 519 540 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF227-213 - 799 5.7e-25 87.0 69.7 10 18 0.023 23 5.4 0.1 2 20 548 566 547 567 0.90 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF227-213 - 799 5.7e-25 87.0 69.7 11 18 0.0058 5.7 7.3 0.1 2 22 576 596 575 596 0.89 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF227-213 - 799 5.7e-25 87.0 69.7 12 18 0.00033 0.33 11.3 0.5 2 22 604 624 603 624 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF227-213 - 799 5.7e-25 87.0 69.7 13 18 0.0098 9.7 6.6 0.0 2 22 632 652 631 652 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF227-213 - 799 5.7e-25 87.0 69.7 14 18 0.0022 2.1 8.7 0.3 2 24 660 682 659 682 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF227-213 - 799 5.7e-25 87.0 69.7 15 18 0.0079 7.8 6.9 0.0 2 21 688 707 687 708 0.87 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF227-213 - 799 5.7e-25 87.0 69.7 16 18 0.029 29 5.1 0.0 2 21 716 735 715 735 0.87 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF227-213 - 799 5.7e-25 87.0 69.7 17 18 0.0012 1.2 9.5 0.0 2 22 744 764 743 764 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF227-213 - 799 5.7e-25 87.0 69.7 18 18 0.0022 2.2 8.7 0.9 2 22 772 792 771 792 0.88 Zinc-finger double-stranded RNA-binding KRAB PF01352.27 42 ZNF227-213 - 799 3.2e-20 71.5 0.3 1 1 6e-23 6e-20 70.6 0.3 2 42 23 63 22 63 0.98 KRAB box Zn-ribbon_8 PF09723.10 40 ZNF227-213 - 799 1e-13 51.1 100.1 1 16 1 1e+03 -0.1 0.1 8 15 252 259 244 269 0.76 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF227-213 - 799 1e-13 51.1 100.1 2 16 0.00098 0.97 9.6 4.9 6 34 324 359 323 359 0.81 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF227-213 - 799 1e-13 51.1 100.1 3 16 0.12 1.2e+02 3.0 13.3 6 34 352 387 351 389 0.85 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF227-213 - 799 1e-13 51.1 100.1 4 16 0.00012 0.12 12.5 5.3 6 34 380 415 379 421 0.92 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF227-213 - 799 1e-13 51.1 100.1 5 16 0.00015 0.15 12.2 4.1 6 34 408 443 407 447 0.90 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF227-213 - 799 1e-13 51.1 100.1 6 16 0.0024 2.4 8.3 3.9 6 37 436 474 435 475 0.76 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF227-213 - 799 1e-13 51.1 100.1 7 16 0.00015 0.15 12.2 4.2 6 34 464 499 463 504 0.83 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF227-213 - 799 1e-13 51.1 100.1 8 16 0.00079 0.79 9.9 4.3 6 34 492 527 491 530 0.89 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF227-213 - 799 1e-13 51.1 100.1 9 16 0.0005 0.49 10.5 3.4 6 35 520 556 518 558 0.88 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF227-213 - 799 1e-13 51.1 100.1 10 16 7e-05 0.07 13.3 2.8 6 34 548 583 547 589 0.88 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF227-213 - 799 1e-13 51.1 100.1 11 16 0.00042 0.42 10.8 5.2 6 35 576 612 575 617 0.88 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF227-213 - 799 1e-13 51.1 100.1 12 16 0.00018 0.17 12.0 2.7 6 34 604 639 603 644 0.92 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF227-213 - 799 1e-13 51.1 100.1 13 16 0.00085 0.84 9.8 1.4 6 34 632 667 631 675 0.90 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF227-213 - 799 1e-13 51.1 100.1 14 16 2.6e-05 0.026 14.6 2.2 6 34 688 723 687 726 0.92 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF227-213 - 799 1e-13 51.1 100.1 15 16 0.0046 4.6 7.5 4.8 6 36 744 781 743 784 0.88 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF227-213 - 799 1e-13 51.1 100.1 16 16 0.1 1e+02 3.2 0.2 6 19 772 785 771 791 0.85 Zinc ribbon domain zf_UBZ PF18439.1 32 ZNF227-213 - 799 9.6e-11 41.1 81.5 1 19 3.2 3.2e+03 -2.2 0.0 9 23 192 207 192 207 0.81 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF227-213 - 799 9.6e-11 41.1 81.5 2 19 0.77 7.7e+02 -0.2 0.1 3 12 250 259 249 266 0.83 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF227-213 - 799 9.6e-11 41.1 81.5 3 19 0.025 25 4.6 0.1 2 15 323 336 322 338 0.87 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF227-213 - 799 9.6e-11 41.1 81.5 4 19 0.001 1 9.0 4.2 3 21 352 371 350 371 0.94 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF227-213 - 799 9.6e-11 41.1 81.5 5 19 0.033 32 4.2 0.3 3 10 380 387 378 390 0.86 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF227-213 - 799 9.6e-11 41.1 81.5 6 19 0.015 15 5.3 0.1 3 13 408 418 406 422 0.83 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF227-213 - 799 9.6e-11 41.1 81.5 7 19 0.13 1.3e+02 2.3 0.5 3 15 436 448 434 455 0.83 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF227-213 - 799 9.6e-11 41.1 81.5 8 19 0.11 1.1e+02 2.5 0.1 3 12 464 473 462 480 0.84 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF227-213 - 799 9.6e-11 41.1 81.5 9 19 0.0039 3.9 7.2 0.1 3 20 492 510 490 511 0.84 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF227-213 - 799 9.6e-11 41.1 81.5 10 19 0.00047 0.47 10.1 0.2 3 21 520 539 518 539 0.93 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF227-213 - 799 9.6e-11 41.1 81.5 11 19 0.31 3.1e+02 1.1 0.1 3 13 548 558 546 565 0.87 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF227-213 - 799 9.6e-11 41.1 81.5 12 19 0.013 13 5.5 0.1 3 13 576 586 574 595 0.85 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF227-213 - 799 9.6e-11 41.1 81.5 13 19 0.0019 1.8 8.2 0.3 3 20 604 622 602 623 0.83 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF227-213 - 799 9.6e-11 41.1 81.5 14 19 0.024 24 4.6 0.0 3 21 632 651 630 651 0.93 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF227-213 - 799 9.6e-11 41.1 81.5 15 19 0.41 4.1e+02 0.7 0.1 3 12 660 669 658 678 0.86 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF227-213 - 799 9.6e-11 41.1 81.5 16 19 0.02 20 4.9 0.1 3 12 688 697 686 707 0.82 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF227-213 - 799 9.6e-11 41.1 81.5 17 19 0.0099 9.9 5.9 0.1 3 15 716 728 714 735 0.83 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF227-213 - 799 9.6e-11 41.1 81.5 18 19 0.00071 0.71 9.5 0.1 3 19 744 760 742 763 0.82 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF227-213 - 799 9.6e-11 41.1 81.5 19 19 0.21 2.1e+02 1.6 0.1 3 12 772 781 770 790 0.83 Ubiquitin-Binding Zinc Finger zf-C2H2_6 PF13912.6 27 ZNF227-213 - 799 5e-10 39.1 132.5 1 20 0.17 1.7e+02 2.4 0.2 2 13 250 261 250 261 0.91 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF227-213 - 799 5e-10 39.1 132.5 2 20 5.8 5.8e+03 -2.5 0.2 20 26 283 289 282 290 0.81 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF227-213 - 799 5e-10 39.1 132.5 3 20 1.7 1.7e+03 -0.8 0.4 10 16 310 316 308 316 0.87 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF227-213 - 799 5e-10 39.1 132.5 4 20 8e-06 0.008 16.2 0.4 2 24 324 346 323 349 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF227-213 - 799 5e-10 39.1 132.5 5 20 0.86 8.6e+02 0.1 4.3 2 12 352 362 352 363 0.90 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF227-213 - 799 5e-10 39.1 132.5 6 20 0.00047 0.47 10.5 0.3 2 26 380 404 380 405 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF227-213 - 799 5e-10 39.1 132.5 7 20 0.028 28 4.9 0.7 2 11 408 417 408 419 0.92 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF227-213 - 799 5e-10 39.1 132.5 8 20 0.0022 2.2 8.4 1.3 2 12 436 446 436 458 0.90 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF227-213 - 799 5e-10 39.1 132.5 9 20 0.15 1.5e+02 2.5 0.2 2 13 464 475 464 484 0.85 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF227-213 - 799 5e-10 39.1 132.5 10 20 0.0014 1.4 9.0 0.4 2 12 492 502 492 510 0.90 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF227-213 - 799 5e-10 39.1 132.5 11 20 0.014 14 5.8 1.0 1 12 519 530 519 543 0.80 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF227-213 - 799 5e-10 39.1 132.5 12 20 0.00071 0.71 10.0 0.5 2 13 548 559 548 566 0.86 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF227-213 - 799 5e-10 39.1 132.5 13 20 0.012 12 6.0 0.8 2 12 576 586 576 601 0.76 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF227-213 - 799 5e-10 39.1 132.5 14 20 0.011 11 6.2 1.6 2 12 604 614 604 615 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF227-213 - 799 5e-10 39.1 132.5 15 20 0.033 33 4.6 0.8 2 13 632 643 632 655 0.78 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF227-213 - 799 5e-10 39.1 132.5 16 20 0.00067 0.66 10.0 0.5 2 13 660 671 660 672 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF227-213 - 799 5e-10 39.1 132.5 17 20 0.0031 3.1 7.9 1.6 2 24 688 710 688 713 0.88 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF227-213 - 799 5e-10 39.1 132.5 18 20 0.007 7 6.8 0.1 2 12 716 726 716 735 0.87 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF227-213 - 799 5e-10 39.1 132.5 19 20 0.0079 7.9 6.6 0.4 2 12 744 754 743 767 0.81 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF227-213 - 799 5e-10 39.1 132.5 20 20 0.0058 5.7 7.0 0.5 2 12 772 782 772 784 0.93 C2H2-type zinc finger XPA_N PF01286.18 32 ZNF227-213 - 799 1.1e-08 34.9 85.4 1 18 0.4 4e+02 1.2 0.1 4 14 252 262 249 262 0.84 XPA protein N-terminal XPA_N PF01286.18 32 ZNF227-213 - 799 1.1e-08 34.9 85.4 2 18 0.026 26 4.9 0.4 3 14 325 336 324 337 0.90 XPA protein N-terminal XPA_N PF01286.18 32 ZNF227-213 - 799 1.1e-08 34.9 85.4 3 18 0.095 95 3.2 5.0 3 14 353 364 351 370 0.87 XPA protein N-terminal XPA_N PF01286.18 32 ZNF227-213 - 799 1.1e-08 34.9 85.4 4 18 0.0044 4.4 7.4 0.1 3 14 381 392 379 394 0.87 XPA protein N-terminal XPA_N PF01286.18 32 ZNF227-213 - 799 1.1e-08 34.9 85.4 5 18 0.0046 4.6 7.4 0.2 3 13 409 419 407 423 0.88 XPA protein N-terminal XPA_N PF01286.18 32 ZNF227-213 - 799 1.1e-08 34.9 85.4 6 18 0.19 1.9e+02 2.2 0.1 3 12 437 446 435 448 0.84 XPA protein N-terminal XPA_N PF01286.18 32 ZNF227-213 - 799 1.1e-08 34.9 85.4 7 18 0.11 1.1e+02 2.9 0.1 3 12 465 474 463 476 0.89 XPA protein N-terminal XPA_N PF01286.18 32 ZNF227-213 - 799 1.1e-08 34.9 85.4 8 18 0.01 10 6.3 0.1 3 13 493 503 491 507 0.88 XPA protein N-terminal XPA_N PF01286.18 32 ZNF227-213 - 799 1.1e-08 34.9 85.4 9 18 0.013 12 6.0 0.3 3 14 521 532 519 538 0.84 XPA protein N-terminal XPA_N PF01286.18 32 ZNF227-213 - 799 1.1e-08 34.9 85.4 10 18 0.19 1.9e+02 2.2 0.1 3 14 549 560 547 561 0.82 XPA protein N-terminal XPA_N PF01286.18 32 ZNF227-213 - 799 1.1e-08 34.9 85.4 11 18 0.011 11 6.1 0.2 3 11 577 585 575 587 0.89 XPA protein N-terminal XPA_N PF01286.18 32 ZNF227-213 - 799 1.1e-08 34.9 85.4 12 18 0.044 44 4.2 0.3 3 13 605 615 603 617 0.87 XPA protein N-terminal XPA_N PF01286.18 32 ZNF227-213 - 799 1.1e-08 34.9 85.4 13 18 0.31 3.1e+02 1.5 0.1 3 14 633 644 631 646 0.89 XPA protein N-terminal XPA_N PF01286.18 32 ZNF227-213 - 799 1.1e-08 34.9 85.4 14 18 0.12 1.2e+02 2.8 0.1 3 14 661 672 659 673 0.83 XPA protein N-terminal XPA_N PF01286.18 32 ZNF227-213 - 799 1.1e-08 34.9 85.4 15 18 0.0013 1.3 9.1 0.0 3 14 689 700 687 706 0.88 XPA protein N-terminal XPA_N PF01286.18 32 ZNF227-213 - 799 1.1e-08 34.9 85.4 16 18 0.01 10 6.2 0.2 3 11 717 725 715 727 0.87 XPA protein N-terminal XPA_N PF01286.18 32 ZNF227-213 - 799 1.1e-08 34.9 85.4 17 18 0.0021 2 8.5 0.5 3 14 745 756 744 759 0.93 XPA protein N-terminal XPA_N PF01286.18 32 ZNF227-213 - 799 1.1e-08 34.9 85.4 18 18 0.48 4.7e+02 0.9 0.3 3 10 773 780 770 785 0.66 XPA protein N-terminal C1_1 PF00130.22 53 ZNF227-213 - 799 5.1e-08 32.7 83.5 1 15 3.5 3.5e+03 -2.0 0.1 11 21 249 259 247 282 0.61 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF227-213 - 799 5.1e-08 32.7 83.5 2 15 7.3 7.3e+03 -3.0 0.0 37 46 298 309 297 316 0.72 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF227-213 - 799 5.1e-08 32.7 83.5 3 15 0.014 14 5.7 11.2 7 51 318 378 312 387 0.85 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF227-213 - 799 5.1e-08 32.7 83.5 4 15 0.0026 2.6 8.0 2.1 1 35 370 414 370 415 0.86 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF227-213 - 799 5.1e-08 32.7 83.5 5 15 0.0039 3.9 7.4 9.2 1 50 398 461 398 473 0.87 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF227-213 - 799 5.1e-08 32.7 83.5 6 15 0.13 1.3e+02 2.6 0.3 4 21 457 473 454 479 0.75 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF227-213 - 799 5.1e-08 32.7 83.5 7 15 8.6e-05 0.085 12.8 1.0 2 35 482 526 480 532 0.91 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF227-213 - 799 5.1e-08 32.7 83.5 8 15 0.013 13 5.7 1.4 1 35 510 554 510 557 0.78 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF227-213 - 799 5.1e-08 32.7 83.5 9 15 0.0025 2.5 8.0 0.8 1 35 538 582 538 585 0.83 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF227-213 - 799 5.1e-08 32.7 83.5 10 15 0.0052 5.1 7.1 2.7 1 36 566 611 566 614 0.81 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF227-213 - 799 5.1e-08 32.7 83.5 11 15 0.009 8.9 6.3 2.8 5 35 598 638 592 641 0.78 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF227-213 - 799 5.1e-08 32.7 83.5 12 15 0.045 45 4.0 0.2 1 26 622 647 622 654 0.69 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF227-213 - 799 5.1e-08 32.7 83.5 13 15 0.00026 0.26 11.2 0.2 1 35 650 694 650 698 0.86 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF227-213 - 799 5.1e-08 32.7 83.5 14 15 0.0017 1.7 8.6 2.9 1 35 705 750 705 756 0.88 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF227-213 - 799 5.1e-08 32.7 83.5 15 15 0.073 72 3.4 0.7 1 23 762 783 762 796 0.73 Phorbol esters/diacylglycerol binding domain (C1 domain) # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF227-213.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF227-213.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF227-213.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF227-213.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF227-213.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:02:02 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZNF230-201 - 474 2.1e-54 179.6 77.6 1 12 0.54 6.9e+02 1.0 0.0 8 14 133 139 131 150 0.70 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF230-201 - 474 2.1e-54 179.6 77.6 2 12 2.8e-05 0.036 14.5 1.4 8 24 161 177 159 177 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF230-201 - 474 2.1e-54 179.6 77.6 3 12 0.013 17 6.1 0.0 1 25 182 206 182 207 0.87 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF230-201 - 474 2.1e-54 179.6 77.6 4 12 5e-08 6.4e-05 23.2 2.9 7 25 216 234 215 235 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF230-201 - 474 2.1e-54 179.6 77.6 5 12 5e-08 6.3e-05 23.2 2.2 2 26 239 263 239 263 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF230-201 - 474 2.1e-54 179.6 77.6 6 12 1.3e-10 1.6e-07 31.4 0.3 2 24 267 289 266 289 0.97 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF230-201 - 474 2.1e-54 179.6 77.6 7 12 6.8e-07 0.00087 19.6 0.3 1 25 294 318 294 319 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF230-201 - 474 2.1e-54 179.6 77.6 8 12 1.8e-09 2.2e-06 27.8 1.6 3 24 324 345 322 346 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF230-201 - 474 2.1e-54 179.6 77.6 9 12 1.1e-08 1.5e-05 25.2 0.1 5 24 354 373 350 375 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF230-201 - 474 2.1e-54 179.6 77.6 10 12 9.3e-12 1.2e-08 35.0 0.4 1 25 378 402 378 403 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF230-201 - 474 2.1e-54 179.6 77.6 11 12 0.0025 3.2 8.4 5.9 5 23 410 428 408 431 0.89 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF230-201 - 474 2.1e-54 179.6 77.6 12 12 0.0015 1.9 9.0 0.2 8 26 441 459 439 459 0.91 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZNF230-201 - 474 1.4e-30 104.0 81.0 1 12 3.9 5e+03 -1.7 0.1 5 11 144 150 143 151 0.83 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF230-201 - 474 1.4e-30 104.0 81.0 2 12 1.5e-07 0.00019 21.7 3.1 1 23 168 190 168 190 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF230-201 - 474 1.4e-30 104.0 81.0 3 12 1.2 1.5e+03 -0.0 0.2 6 17 198 212 196 213 0.77 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF230-201 - 474 1.4e-30 104.0 81.0 4 12 0.042 54 4.5 3.2 1 11 224 234 224 246 0.82 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF230-201 - 474 1.4e-30 104.0 81.0 5 12 2.6e-06 0.0033 17.8 0.6 1 23 252 274 252 274 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF230-201 - 474 1.4e-30 104.0 81.0 6 12 1.1e-05 0.014 15.9 5.0 1 23 280 302 280 302 0.92 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF230-201 - 474 1.4e-30 104.0 81.0 7 12 0.00019 0.24 11.9 0.1 5 23 312 330 310 330 0.95 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF230-201 - 474 1.4e-30 104.0 81.0 8 12 5.4e-07 0.0007 19.9 0.7 1 23 336 358 336 358 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF230-201 - 474 1.4e-30 104.0 81.0 9 12 1e-07 0.00013 22.2 0.2 1 23 364 386 364 386 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF230-201 - 474 1.4e-30 104.0 81.0 10 12 2.3e-07 0.00029 21.1 1.0 1 23 392 414 392 414 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF230-201 - 474 1.4e-30 104.0 81.0 11 12 0.0056 7.2 7.3 0.5 1 13 420 432 420 434 0.84 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF230-201 - 474 1.4e-30 104.0 81.0 12 12 0.00054 0.69 10.5 0.3 2 16 449 463 448 464 0.90 Zinc finger, C2H2 type KRAB PF01352.27 42 ZNF230-201 - 474 3.2e-22 77.9 0.8 1 2 4.4e-25 5.7e-22 77.1 0.2 2 42 8 48 7 48 0.98 KRAB box KRAB PF01352.27 42 ZNF230-201 - 474 3.2e-22 77.9 0.8 2 2 5.3 6.8e+03 -3.2 0.0 3 9 148 154 148 154 0.86 KRAB box zf-C2H2_4 PF13894.6 24 ZNF230-201 - 474 1.6e-18 65.8 79.3 1 12 6.9 8.8e+03 -1.9 0.0 6 12 145 151 142 153 0.82 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF230-201 - 474 1.6e-18 65.8 79.3 2 12 8.9e-05 0.11 13.3 2.5 1 23 168 190 168 191 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF230-201 - 474 1.6e-18 65.8 79.3 3 12 8.3 1.1e+04 -2.1 0.2 7 23 202 218 197 218 0.70 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF230-201 - 474 1.6e-18 65.8 79.3 4 12 4.2e-05 0.054 14.3 4.0 1 23 224 246 224 247 0.91 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF230-201 - 474 1.6e-18 65.8 79.3 5 12 0.00087 1.1 10.3 0.5 1 23 252 274 252 275 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF230-201 - 474 1.6e-18 65.8 79.3 6 12 2.3e-05 0.029 15.2 5.0 1 23 280 302 280 303 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF230-201 - 474 1.6e-18 65.8 79.3 7 12 0.0018 2.3 9.3 0.1 2 23 309 330 308 331 0.88 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF230-201 - 474 1.6e-18 65.8 79.3 8 12 0.00022 0.29 12.1 0.8 1 23 336 358 336 359 0.87 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF230-201 - 474 1.6e-18 65.8 79.3 9 12 4.5e-05 0.058 14.3 0.2 1 23 364 386 364 387 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF230-201 - 474 1.6e-18 65.8 79.3 10 12 6.8e-06 0.0087 16.8 0.9 1 23 392 414 392 414 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF230-201 - 474 1.6e-18 65.8 79.3 11 12 0.29 3.7e+02 2.4 1.5 1 10 420 429 420 436 0.85 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF230-201 - 474 1.6e-18 65.8 79.3 12 12 0.032 41 5.4 0.1 2 14 449 461 448 464 0.84 C2H2-type zinc finger # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF230-201.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF230-201.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF230-201.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF230-201.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF230-201.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:02:02 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF230-202.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF230-202.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF230-202.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF230-202.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF230-202.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:02:02 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZNF230-203 - 410 2.9e-55 182.4 77.6 1 12 0.42 5.8e+02 1.2 0.0 8 14 69 75 67 86 0.70 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF230-203 - 410 2.9e-55 182.4 77.6 2 12 2.2e-05 0.031 14.7 1.4 8 24 97 113 95 113 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF230-203 - 410 2.9e-55 182.4 77.6 3 12 0.01 14 6.3 0.0 1 25 118 142 118 143 0.87 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF230-203 - 410 2.9e-55 182.4 77.6 4 12 3.9e-08 5.4e-05 23.4 2.9 7 25 152 170 151 171 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF230-203 - 410 2.9e-55 182.4 77.6 5 12 3.9e-08 5.3e-05 23.5 2.2 2 26 175 199 175 199 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF230-203 - 410 2.9e-55 182.4 77.6 6 12 9.9e-11 1.4e-07 31.6 0.3 2 24 203 225 202 225 0.97 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF230-203 - 410 2.9e-55 182.4 77.6 7 12 5.3e-07 0.00073 19.9 0.3 1 25 230 254 230 255 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF230-203 - 410 2.9e-55 182.4 77.6 8 12 1.4e-09 1.9e-06 28.0 1.6 3 24 260 281 258 282 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF230-203 - 410 2.9e-55 182.4 77.6 9 12 8.9e-09 1.2e-05 25.5 0.1 5 24 290 309 286 311 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF230-203 - 410 2.9e-55 182.4 77.6 10 12 7.2e-12 9.9e-09 35.2 0.4 1 25 314 338 314 339 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF230-203 - 410 2.9e-55 182.4 77.6 11 12 0.0019 2.7 8.6 5.9 5 23 346 364 344 367 0.89 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF230-203 - 410 2.9e-55 182.4 77.6 12 12 0.0012 1.6 9.3 0.2 8 26 377 395 375 395 0.91 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZNF230-203 - 410 1.2e-31 107.3 80.3 1 12 2.7 3.7e+03 -1.2 0.1 5 12 80 87 79 88 0.85 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF230-203 - 410 1.2e-31 107.3 80.3 2 12 1.2e-07 0.00016 21.9 3.1 1 23 104 126 104 126 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF230-203 - 410 1.2e-31 107.3 80.3 3 12 0.91 1.3e+03 0.2 0.2 6 17 134 148 132 149 0.77 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF230-203 - 410 1.2e-31 107.3 80.3 4 12 0.033 45 4.8 3.2 1 11 160 170 160 182 0.82 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF230-203 - 410 1.2e-31 107.3 80.3 5 12 2e-06 0.0027 18.0 0.6 1 23 188 210 188 210 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF230-203 - 410 1.2e-31 107.3 80.3 6 12 8.2e-06 0.011 16.1 5.0 1 23 216 238 216 238 0.92 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF230-203 - 410 1.2e-31 107.3 80.3 7 12 0.00014 0.2 12.2 0.1 5 23 248 266 246 266 0.95 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF230-203 - 410 1.2e-31 107.3 80.3 8 12 4.2e-07 0.00058 20.2 0.7 1 23 272 294 272 294 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF230-203 - 410 1.2e-31 107.3 80.3 9 12 7.8e-08 0.00011 22.5 0.2 1 23 300 322 300 322 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF230-203 - 410 1.2e-31 107.3 80.3 10 12 1.8e-07 0.00024 21.4 1.0 1 23 328 350 328 350 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF230-203 - 410 1.2e-31 107.3 80.3 11 12 0.0044 6.1 7.5 0.5 1 13 356 368 356 370 0.84 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF230-203 - 410 1.2e-31 107.3 80.3 12 12 0.00042 0.58 10.7 0.3 2 16 385 399 384 400 0.90 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZNF230-203 - 410 2.5e-19 68.3 79.3 1 12 5.4 7.5e+03 -1.6 0.0 6 12 81 87 78 89 0.82 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF230-203 - 410 2.5e-19 68.3 79.3 2 12 6.9e-05 0.095 13.6 2.5 1 23 104 126 104 127 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF230-203 - 410 2.5e-19 68.3 79.3 3 12 6.5 8.9e+03 -1.9 0.2 7 23 138 154 133 154 0.70 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF230-203 - 410 2.5e-19 68.3 79.3 4 12 3.3e-05 0.045 14.6 4.0 1 23 160 182 160 183 0.91 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF230-203 - 410 2.5e-19 68.3 79.3 5 12 0.00068 0.94 10.5 0.5 1 23 188 210 188 211 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF230-203 - 410 2.5e-19 68.3 79.3 6 12 1.8e-05 0.024 15.4 5.0 1 23 216 238 216 239 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF230-203 - 410 2.5e-19 68.3 79.3 7 12 0.0014 1.9 9.5 0.1 2 23 245 266 244 267 0.88 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF230-203 - 410 2.5e-19 68.3 79.3 8 12 0.00017 0.24 12.3 0.8 1 23 272 294 272 295 0.87 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF230-203 - 410 2.5e-19 68.3 79.3 9 12 3.5e-05 0.049 14.5 0.2 1 23 300 322 300 323 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF230-203 - 410 2.5e-19 68.3 79.3 10 12 5.3e-06 0.0072 17.1 0.9 1 23 328 350 328 350 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF230-203 - 410 2.5e-19 68.3 79.3 11 12 0.23 3.1e+02 2.6 1.5 1 10 356 365 356 372 0.85 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF230-203 - 410 2.5e-19 68.3 79.3 12 12 0.025 34 5.6 0.1 2 14 385 397 384 400 0.84 C2H2-type zinc finger # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF230-203.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF230-203.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF230-203.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF230-203.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF230-203.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:02:03 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- KRAB PF01352.27 42 ZNF230-204 - 87 3e-23 81.2 0.2 1 2 1.7e-27 3e-23 81.2 0.2 2 42 8 48 7 48 0.98 KRAB box KRAB PF01352.27 42 ZNF230-204 - 87 3e-23 81.2 0.2 2 2 0.23 4.2e+03 -2.5 0.1 12 16 58 62 56 73 0.47 KRAB box # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF230-204.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF230-204.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF230-204.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF230-204.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF230-204.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:02:03 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF230-205.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF230-205.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF230-205.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF230-205.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF230-205.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:02:03 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZNF23-201 - 643 8e-126 405.4 118.5 1 18 0.41 4e+02 1.7 0.1 2 18 155 171 154 173 0.80 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF23-201 - 643 8e-126 405.4 118.5 2 18 2.7e-06 0.0027 18.1 0.1 10 25 191 206 183 206 0.83 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF23-201 - 643 8e-126 405.4 118.5 3 18 1.9e-09 1.9e-06 28.0 0.4 2 25 211 234 210 235 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF23-201 - 643 8e-126 405.4 118.5 4 18 7.4e-08 7.4e-05 23.0 1.5 4 25 241 262 238 262 0.90 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF23-201 - 643 8e-126 405.4 118.5 5 18 1.8e-11 1.8e-08 34.4 1.0 1 25 266 290 266 291 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF23-201 - 643 8e-126 405.4 118.5 6 18 8.7e-11 8.7e-08 32.3 0.3 4 25 297 318 294 318 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF23-201 - 643 8e-126 405.4 118.5 7 18 2.8e-10 2.8e-07 30.7 1.3 2 25 323 346 322 347 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF23-201 - 643 8e-126 405.4 118.5 8 18 1.9e-11 1.9e-08 34.3 0.3 2 26 351 375 350 375 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF23-201 - 643 8e-126 405.4 118.5 9 18 2.6e-11 2.6e-08 33.9 0.3 2 25 379 402 378 402 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF23-201 - 643 8e-126 405.4 118.5 10 18 8e-11 7.9e-08 32.4 1.3 2 25 407 430 406 431 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF23-201 - 643 8e-126 405.4 118.5 11 18 1.1e-11 1.1e-08 35.1 0.5 2 25 435 458 434 458 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF23-201 - 643 8e-126 405.4 118.5 12 18 6.8e-11 6.8e-08 32.6 1.8 2 26 463 487 462 487 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF23-201 - 643 8e-126 405.4 118.5 13 18 1.3e-10 1.3e-07 31.7 1.0 1 25 490 514 490 514 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF23-201 - 643 8e-126 405.4 118.5 14 18 1.4e-11 1.4e-08 34.8 3.2 2 25 519 542 518 543 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF23-201 - 643 8e-126 405.4 118.5 15 18 2.2e-10 2.1e-07 31.0 1.5 4 24 549 569 546 570 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF23-201 - 643 8e-126 405.4 118.5 16 18 2.6e-10 2.6e-07 30.7 1.0 1 25 574 598 574 598 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF23-201 - 643 8e-126 405.4 118.5 17 18 6.1e-06 0.006 17.0 0.3 5 24 606 625 602 626 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF23-201 - 643 8e-126 405.4 118.5 18 18 6.1 6.1e+03 -2.0 0.0 2 10 631 639 630 642 0.84 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZNF23-201 - 643 1.5e-77 251.9 119.3 1 16 3.3e-07 0.00033 20.9 0.1 1 23 196 218 196 218 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF23-201 - 643 1.5e-77 251.9 119.3 2 16 2.3e-07 0.00023 21.5 2.8 1 23 224 246 224 246 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF23-201 - 643 1.5e-77 251.9 119.3 3 16 2.3e-08 2.3e-05 24.6 0.5 1 23 252 274 252 274 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF23-201 - 643 1.5e-77 251.9 119.3 4 16 0.00016 0.16 12.5 1.5 1 23 280 302 280 302 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF23-201 - 643 1.5e-77 251.9 119.3 5 16 7.9e-08 7.9e-05 22.9 0.1 1 23 308 330 308 330 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF23-201 - 643 1.5e-77 251.9 119.3 6 16 3.5e-06 0.0035 17.7 1.8 1 23 336 358 336 358 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF23-201 - 643 1.5e-77 251.9 119.3 7 16 3.9e-08 3.9e-05 23.9 0.5 1 23 364 386 364 386 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF23-201 - 643 1.5e-77 251.9 119.3 8 16 1.1e-07 0.00011 22.5 0.1 1 23 392 414 392 414 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF23-201 - 643 1.5e-77 251.9 119.3 9 16 2.9e-06 0.0029 18.0 2.5 1 23 420 442 420 442 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF23-201 - 643 1.5e-77 251.9 119.3 10 16 2.4e-08 2.4e-05 24.6 0.2 1 23 448 470 448 470 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF23-201 - 643 1.5e-77 251.9 119.3 11 16 4.4e-07 0.00044 20.6 4.4 1 23 476 498 476 498 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF23-201 - 643 1.5e-77 251.9 119.3 12 16 4.7e-08 4.7e-05 23.6 0.4 1 23 504 526 504 526 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF23-201 - 643 1.5e-77 251.9 119.3 13 16 1.8e-05 0.018 15.4 2.1 1 23 532 554 532 554 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF23-201 - 643 1.5e-77 251.9 119.3 14 16 2.6e-07 0.00026 21.3 2.8 1 23 560 582 560 582 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF23-201 - 643 1.5e-77 251.9 119.3 15 16 2.7e-06 0.0027 18.1 0.3 1 23 588 610 588 610 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF23-201 - 643 1.5e-77 251.9 119.3 16 16 1.7e-06 0.0017 18.7 1.0 1 23 616 638 616 638 0.98 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZNF23-201 - 643 8.8e-48 156.8 117.6 1 17 3 3e+03 -0.4 0.0 8 21 175 188 168 189 0.77 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF23-201 - 643 8.8e-48 156.8 117.6 2 17 0.0025 2.5 9.2 0.3 1 23 196 218 196 219 0.74 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF23-201 - 643 8.8e-48 156.8 117.6 3 17 0.0002 0.2 12.6 2.4 1 23 224 246 224 247 0.91 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF23-201 - 643 8.8e-48 156.8 117.6 4 17 3.2e-06 0.0032 18.2 0.4 1 23 252 274 252 275 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF23-201 - 643 8.8e-48 156.8 117.6 5 17 3.5e-05 0.035 14.9 1.4 1 23 280 302 280 303 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF23-201 - 643 8.8e-48 156.8 117.6 6 17 0.00019 0.19 12.7 0.1 1 23 308 330 308 331 0.91 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF23-201 - 643 8.8e-48 156.8 117.6 7 17 8.5e-06 0.0085 16.9 1.8 1 23 336 358 336 359 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF23-201 - 643 8.8e-48 156.8 117.6 8 17 5.3e-06 0.0053 17.5 0.3 1 23 364 386 364 387 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF23-201 - 643 8.8e-48 156.8 117.6 9 17 1.2e-05 0.012 16.3 0.2 1 23 392 414 392 415 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF23-201 - 643 8.8e-48 156.8 117.6 10 17 4.6e-06 0.0046 17.7 2.1 1 23 420 442 420 443 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF23-201 - 643 8.8e-48 156.8 117.6 11 17 2.4e-05 0.024 15.5 0.2 1 23 448 470 448 471 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF23-201 - 643 8.8e-48 156.8 117.6 12 17 2.6e-05 0.026 15.4 3.3 1 23 476 498 476 499 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF23-201 - 643 8.8e-48 156.8 117.6 13 17 2.6e-05 0.026 15.3 0.4 1 23 504 526 504 527 0.89 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF23-201 - 643 8.8e-48 156.8 117.6 14 17 0.0004 0.4 11.6 2.2 1 23 532 554 532 555 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF23-201 - 643 8.8e-48 156.8 117.6 15 17 4e-05 0.039 14.8 2.6 1 23 560 582 560 583 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF23-201 - 643 8.8e-48 156.8 117.6 16 17 0.0026 2.6 9.1 0.4 1 23 588 610 588 611 0.88 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF23-201 - 643 8.8e-48 156.8 117.6 17 17 0.00014 0.14 13.0 1.4 1 23 616 638 616 639 0.93 C2H2-type zinc finger zf-C2H2_11 PF16622.5 29 ZNF23-201 - 643 1.6e-20 72.5 82.2 1 17 3.7 3.7e+03 -2.2 0.3 2 7 126 131 125 133 0.83 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF23-201 - 643 1.6e-20 72.5 82.2 2 17 0.0019 1.9 8.3 0.0 5 18 196 209 192 217 0.81 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF23-201 - 643 1.6e-20 72.5 82.2 3 17 0.02 20 5.0 0.2 5 15 224 234 221 238 0.85 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF23-201 - 643 1.6e-20 72.5 82.2 4 17 8.1e-08 8e-05 22.3 0.4 5 26 252 273 249 274 0.94 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF23-201 - 643 1.6e-20 72.5 82.2 5 17 0.022 22 4.9 0.8 5 16 280 291 277 298 0.87 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF23-201 - 643 1.6e-20 72.5 82.2 6 17 0.23 2.3e+02 1.7 0.0 6 26 309 329 307 330 0.86 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF23-201 - 643 1.6e-20 72.5 82.2 7 17 0.21 2.1e+02 1.8 1.6 6 26 337 357 334 358 0.86 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF23-201 - 643 1.6e-20 72.5 82.2 8 17 0.011 11 5.9 0.1 5 26 364 385 361 386 0.84 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF23-201 - 643 1.6e-20 72.5 82.2 9 17 0.00069 0.69 9.7 0.1 6 26 393 413 390 414 0.93 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF23-201 - 643 1.6e-20 72.5 82.2 10 17 0.11 1.1e+02 2.7 0.8 6 26 421 441 418 442 0.90 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF23-201 - 643 1.6e-20 72.5 82.2 11 17 7e-05 0.069 12.9 0.1 6 26 449 469 446 470 0.93 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF23-201 - 643 1.6e-20 72.5 82.2 12 17 3.9e-06 0.0039 16.9 0.9 6 26 477 497 474 498 0.85 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF23-201 - 643 1.6e-20 72.5 82.2 13 17 2.1e-06 0.0021 17.8 0.1 5 26 504 525 501 526 0.94 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF23-201 - 643 1.6e-20 72.5 82.2 14 17 0.61 6e+02 0.3 0.5 5 15 532 542 529 546 0.84 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF23-201 - 643 1.6e-20 72.5 82.2 15 17 0.0035 3.5 7.5 0.2 5 23 560 578 557 580 0.90 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF23-201 - 643 1.6e-20 72.5 82.2 16 17 0.024 24 4.8 0.1 5 15 588 598 585 602 0.84 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF23-201 - 643 1.6e-20 72.5 82.2 17 17 1.7 1.6e+03 -1.1 0.9 7 23 618 634 616 637 0.85 zinc-finger C2H2-type Zn-ribbon_8 PF09723.10 40 ZNF23-201 - 643 4.6e-17 61.8 83.9 1 14 0.0029 2.8 8.1 3.6 6 34 196 231 195 234 0.76 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF23-201 - 643 4.6e-17 61.8 83.9 2 14 0.00079 0.78 9.9 2.7 6 34 224 259 223 262 0.90 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF23-201 - 643 4.6e-17 61.8 83.9 3 14 5.3e-06 0.0052 16.9 1.3 6 34 252 287 251 290 0.92 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF23-201 - 643 4.6e-17 61.8 83.9 4 14 1.1e-05 0.011 15.8 3.0 6 34 308 343 307 346 0.91 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF23-201 - 643 4.6e-17 61.8 83.9 5 14 0.00015 0.15 12.2 6.4 6 34 336 371 335 380 0.92 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF23-201 - 643 4.6e-17 61.8 83.9 6 14 2.8e-05 0.028 14.5 4.1 6 34 364 399 363 404 0.91 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF23-201 - 643 4.6e-17 61.8 83.9 7 14 2.1e-05 0.021 15.0 4.3 6 36 392 429 391 431 0.91 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF23-201 - 643 4.6e-17 61.8 83.9 8 14 0.0017 1.7 8.8 6.4 6 34 420 455 419 458 0.84 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF23-201 - 643 4.6e-17 61.8 83.9 9 14 0.00019 0.19 11.9 5.2 6 34 448 483 447 491 0.87 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF23-201 - 643 4.6e-17 61.8 83.9 10 14 0.0059 5.9 7.1 7.2 6 34 476 511 475 514 0.88 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF23-201 - 643 4.6e-17 61.8 83.9 11 14 0.00084 0.83 9.8 3.9 6 34 504 539 503 542 0.89 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF23-201 - 643 4.6e-17 61.8 83.9 12 14 0.0071 7.1 6.8 6.2 6 34 532 567 531 572 0.90 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF23-201 - 643 4.6e-17 61.8 83.9 13 14 0.013 13 6.0 0.4 6 17 560 571 559 581 0.84 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF23-201 - 643 4.6e-17 61.8 83.9 14 14 0.00033 0.33 11.1 0.5 6 36 588 625 587 629 0.89 Zinc ribbon domain zf-C2H2_6 PF13912.6 27 ZNF23-201 - 643 3.9e-11 42.7 106.4 1 16 0.00059 0.59 10.2 0.3 2 24 196 218 196 221 0.81 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF23-201 - 643 3.9e-11 42.7 106.4 2 16 0.012 12 6.0 2.6 2 13 224 235 224 236 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF23-201 - 643 3.9e-11 42.7 106.4 3 16 0.025 25 5.0 0.2 2 12 252 262 252 263 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF23-201 - 643 3.9e-11 42.7 106.4 4 16 0.035 35 4.5 1.1 2 12 280 290 280 300 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF23-201 - 643 3.9e-11 42.7 106.4 5 16 0.031 31 4.7 0.1 2 12 308 318 308 328 0.95 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF23-201 - 643 3.9e-11 42.7 106.4 6 16 0.0033 3.3 7.8 1.3 2 12 336 346 336 356 0.92 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF23-201 - 643 3.9e-11 42.7 106.4 7 16 0.0016 1.6 8.8 0.4 2 20 364 382 364 388 0.78 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF23-201 - 643 3.9e-11 42.7 106.4 8 16 0.00088 0.88 9.7 0.6 2 12 392 402 392 403 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF23-201 - 643 3.9e-11 42.7 106.4 9 16 0.0014 1.4 9.0 0.5 2 12 420 430 420 430 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF23-201 - 643 3.9e-11 42.7 106.4 10 16 0.0013 1.3 9.1 0.6 2 12 448 458 448 459 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF23-201 - 643 3.9e-11 42.7 106.4 11 16 0.014 14 5.9 1.9 2 17 476 491 476 499 0.81 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF23-201 - 643 3.9e-11 42.7 106.4 12 16 0.0027 2.7 8.1 0.5 2 12 504 514 504 515 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF23-201 - 643 3.9e-11 42.7 106.4 13 16 0.13 1.3e+02 2.8 0.7 2 12 532 542 532 542 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF23-201 - 643 3.9e-11 42.7 106.4 14 16 0.0031 3.1 7.9 2.0 2 24 560 582 560 585 0.78 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF23-201 - 643 3.9e-11 42.7 106.4 15 16 0.088 88 3.3 0.6 2 12 588 598 588 598 0.92 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF23-201 - 643 3.9e-11 42.7 106.4 16 16 0.0082 8.2 6.6 0.1 2 12 616 626 616 626 0.87 C2H2-type zinc finger zf_UBZ PF18439.1 32 ZNF23-201 - 643 9.2e-10 37.9 72.9 1 16 0.00047 0.46 10.1 0.1 3 17 196 210 194 214 0.90 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF23-201 - 643 9.2e-10 37.9 72.9 2 16 0.05 50 3.6 0.2 3 14 224 235 222 243 0.81 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF23-201 - 643 9.2e-10 37.9 72.9 3 16 0.022 22 4.7 0.0 3 20 252 270 250 271 0.82 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF23-201 - 643 9.2e-10 37.9 72.9 4 16 0.027 27 4.5 0.5 3 20 280 298 278 299 0.80 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF23-201 - 643 9.2e-10 37.9 72.9 5 16 0.0074 7.4 6.3 0.1 3 21 308 327 306 327 0.87 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF23-201 - 643 9.2e-10 37.9 72.9 6 16 0.017 17 5.1 1.0 3 21 336 355 334 355 0.90 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF23-201 - 643 9.2e-10 37.9 72.9 7 16 0.0079 7.9 6.2 0.1 3 20 364 382 362 383 0.81 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF23-201 - 643 9.2e-10 37.9 72.9 8 16 0.0025 2.5 7.8 0.1 3 21 392 411 390 411 0.88 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF23-201 - 643 9.2e-10 37.9 72.9 9 16 0.018 18 5.0 0.7 3 20 420 438 418 439 0.87 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF23-201 - 643 9.2e-10 37.9 72.9 10 16 0.0037 3.7 7.2 0.1 3 21 448 467 446 467 0.86 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF23-201 - 643 9.2e-10 37.9 72.9 11 16 0.26 2.6e+02 1.3 0.7 3 14 476 487 474 495 0.79 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF23-201 - 643 9.2e-10 37.9 72.9 12 16 0.00075 0.75 9.4 0.1 3 20 504 522 502 523 0.83 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF23-201 - 643 9.2e-10 37.9 72.9 13 16 0.52 5.2e+02 0.3 0.7 3 15 532 544 530 550 0.87 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF23-201 - 643 9.2e-10 37.9 72.9 14 16 0.0097 9.6 5.9 0.2 3 15 560 572 558 579 0.83 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF23-201 - 643 9.2e-10 37.9 72.9 15 16 0.23 2.3e+02 1.5 0.1 3 15 588 600 586 607 0.81 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF23-201 - 643 9.2e-10 37.9 72.9 16 16 0.069 69 3.2 0.0 3 21 616 635 614 635 0.89 Ubiquitin-Binding Zinc Finger C1_4 PF07975.12 55 ZNF23-201 - 643 6.6e-08 32.7 79.3 1 14 7.7e-05 0.076 13.3 0.2 5 49 179 219 175 221 0.82 TFIIH C1-like domain C1_4 PF07975.12 55 ZNF23-201 - 643 6.6e-08 32.7 79.3 2 14 0.00071 0.71 10.1 1.7 1 49 225 275 225 277 0.87 TFIIH C1-like domain C1_4 PF07975.12 55 ZNF23-201 - 643 6.6e-08 32.7 79.3 3 14 0.1 1e+02 3.2 0.7 21 48 275 302 264 304 0.72 TFIIH C1-like domain C1_4 PF07975.12 55 ZNF23-201 - 643 6.6e-08 32.7 79.3 4 14 0.02 20 5.5 4.2 5 49 285 331 281 333 0.72 TFIIH C1-like domain C1_4 PF07975.12 55 ZNF23-201 - 643 6.6e-08 32.7 79.3 5 14 0.026 26 5.1 4.0 1 49 309 359 309 361 0.81 TFIIH C1-like domain C1_4 PF07975.12 55 ZNF23-201 - 643 6.6e-08 32.7 79.3 6 14 0.098 97 3.3 3.6 2 48 338 386 337 389 0.71 TFIIH C1-like domain C1_4 PF07975.12 55 ZNF23-201 - 643 6.6e-08 32.7 79.3 7 14 0.00087 0.86 9.9 1.1 2 49 366 415 365 417 0.84 TFIIH C1-like domain C1_4 PF07975.12 55 ZNF23-201 - 643 6.6e-08 32.7 79.3 8 14 0.12 1.2e+02 3.0 4.9 1 35 393 429 393 442 0.80 TFIIH C1-like domain C1_4 PF07975.12 55 ZNF23-201 - 643 6.6e-08 32.7 79.3 9 14 0.002 2 8.7 2.8 2 49 422 471 421 474 0.75 TFIIH C1-like domain C1_4 PF07975.12 55 ZNF23-201 - 643 6.6e-08 32.7 79.3 10 14 0.0029 2.9 8.2 3.2 2 49 478 527 477 529 0.78 TFIIH C1-like domain C1_4 PF07975.12 55 ZNF23-201 - 643 6.6e-08 32.7 79.3 11 14 0.029 29 5.0 1.4 21 49 527 555 518 558 0.84 TFIIH C1-like domain C1_4 PF07975.12 55 ZNF23-201 - 643 6.6e-08 32.7 79.3 12 14 0.023 23 5.3 6.2 1 48 533 582 533 585 0.85 TFIIH C1-like domain C1_4 PF07975.12 55 ZNF23-201 - 643 6.6e-08 32.7 79.3 13 14 0.0011 1.1 9.5 3.5 2 49 562 611 561 613 0.83 TFIIH C1-like domain C1_4 PF07975.12 55 ZNF23-201 - 643 6.6e-08 32.7 79.3 14 14 1.4 1.4e+03 -0.4 0.1 25 48 615 638 611 639 0.77 TFIIH C1-like domain # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF23-201.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF23-201.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF23-201.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF23-201.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF23-201.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:02:04 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZNF23-202 - 585 1.2e-126 408.1 118.5 1 18 0.36 3.6e+02 1.8 0.1 2 18 97 113 96 115 0.80 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF23-202 - 585 1.2e-126 408.1 118.5 2 18 2.4e-06 0.0024 18.2 0.1 10 25 133 148 125 148 0.83 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF23-202 - 585 1.2e-126 408.1 118.5 3 18 1.7e-09 1.7e-06 28.2 0.4 2 25 153 176 152 177 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF23-202 - 585 1.2e-126 408.1 118.5 4 18 6.6e-08 6.6e-05 23.2 1.5 4 25 183 204 180 204 0.90 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF23-202 - 585 1.2e-126 408.1 118.5 5 18 1.6e-11 1.6e-08 34.6 1.0 1 25 208 232 208 233 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF23-202 - 585 1.2e-126 408.1 118.5 6 18 7.8e-11 7.8e-08 32.4 0.3 4 25 239 260 236 260 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF23-202 - 585 1.2e-126 408.1 118.5 7 18 2.5e-10 2.5e-07 30.8 1.3 2 25 265 288 264 289 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF23-202 - 585 1.2e-126 408.1 118.5 8 18 1.7e-11 1.7e-08 34.5 0.3 2 26 293 317 292 317 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF23-202 - 585 1.2e-126 408.1 118.5 9 18 2.3e-11 2.3e-08 34.1 0.3 2 25 321 344 320 344 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF23-202 - 585 1.2e-126 408.1 118.5 10 18 7.1e-11 7.1e-08 32.5 1.3 2 25 349 372 348 373 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF23-202 - 585 1.2e-126 408.1 118.5 11 18 9.7e-12 9.7e-09 35.3 0.5 2 25 377 400 376 400 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF23-202 - 585 1.2e-126 408.1 118.5 12 18 6.1e-11 6.1e-08 32.8 1.8 2 26 405 429 404 429 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF23-202 - 585 1.2e-126 408.1 118.5 13 18 1.2e-10 1.2e-07 31.9 1.0 1 25 432 456 432 456 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF23-202 - 585 1.2e-126 408.1 118.5 14 18 1.3e-11 1.3e-08 34.9 3.2 2 25 461 484 460 485 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF23-202 - 585 1.2e-126 408.1 118.5 15 18 1.9e-10 1.9e-07 31.2 1.5 4 24 491 511 488 512 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF23-202 - 585 1.2e-126 408.1 118.5 16 18 2.4e-10 2.3e-07 30.9 1.0 1 25 516 540 516 540 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF23-202 - 585 1.2e-126 408.1 118.5 17 18 5.4e-06 0.0054 17.1 0.3 5 24 548 567 544 568 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF23-202 - 585 1.2e-126 408.1 118.5 18 18 5.5 5.5e+03 -1.9 0.0 2 10 573 581 572 584 0.84 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZNF23-202 - 585 2.4e-78 254.4 119.3 1 16 3e-07 0.0003 21.1 0.1 1 23 138 160 138 160 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF23-202 - 585 2.4e-78 254.4 119.3 2 16 2e-07 0.0002 21.6 2.8 1 23 166 188 166 188 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF23-202 - 585 2.4e-78 254.4 119.3 3 16 2.1e-08 2e-05 24.7 0.5 1 23 194 216 194 216 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF23-202 - 585 2.4e-78 254.4 119.3 4 16 0.00014 0.14 12.6 1.5 1 23 222 244 222 244 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF23-202 - 585 2.4e-78 254.4 119.3 5 16 7.1e-08 7.1e-05 23.1 0.1 1 23 250 272 250 272 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF23-202 - 585 2.4e-78 254.4 119.3 6 16 3.2e-06 0.0032 17.9 1.8 1 23 278 300 278 300 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF23-202 - 585 2.4e-78 254.4 119.3 7 16 3.5e-08 3.5e-05 24.0 0.5 1 23 306 328 306 328 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF23-202 - 585 2.4e-78 254.4 119.3 8 16 9.9e-08 9.8e-05 22.6 0.1 1 23 334 356 334 356 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF23-202 - 585 2.4e-78 254.4 119.3 9 16 2.6e-06 0.0026 18.1 2.5 1 23 362 384 362 384 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF23-202 - 585 2.4e-78 254.4 119.3 10 16 2.1e-08 2.1e-05 24.7 0.2 1 23 390 412 390 412 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF23-202 - 585 2.4e-78 254.4 119.3 11 16 4e-07 0.00039 20.7 4.4 1 23 418 440 418 440 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF23-202 - 585 2.4e-78 254.4 119.3 12 16 4.2e-08 4.2e-05 23.8 0.4 1 23 446 468 446 468 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF23-202 - 585 2.4e-78 254.4 119.3 13 16 1.7e-05 0.016 15.6 2.1 1 23 474 496 474 496 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF23-202 - 585 2.4e-78 254.4 119.3 14 16 2.4e-07 0.00024 21.4 2.8 1 23 502 524 502 524 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF23-202 - 585 2.4e-78 254.4 119.3 15 16 2.4e-06 0.0024 18.2 0.3 1 23 530 552 530 552 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF23-202 - 585 2.4e-78 254.4 119.3 16 16 1.5e-06 0.0015 18.8 1.0 1 23 558 580 558 580 0.98 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZNF23-202 - 585 1.3e-48 159.4 117.6 1 17 2.7 2.7e+03 -0.3 0.0 8 21 117 130 110 131 0.77 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF23-202 - 585 1.3e-48 159.4 117.6 2 17 0.0022 2.2 9.3 0.3 1 23 138 160 138 161 0.74 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF23-202 - 585 1.3e-48 159.4 117.6 3 17 0.00018 0.18 12.7 2.4 1 23 166 188 166 189 0.91 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF23-202 - 585 1.3e-48 159.4 117.6 4 17 2.9e-06 0.0029 18.3 0.4 1 23 194 216 194 217 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF23-202 - 585 1.3e-48 159.4 117.6 5 17 3.1e-05 0.031 15.1 1.4 1 23 222 244 222 245 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF23-202 - 585 1.3e-48 159.4 117.6 6 17 0.00017 0.17 12.8 0.1 1 23 250 272 250 273 0.91 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF23-202 - 585 1.3e-48 159.4 117.6 7 17 7.6e-06 0.0076 17.0 1.8 1 23 278 300 278 301 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF23-202 - 585 1.3e-48 159.4 117.6 8 17 4.7e-06 0.0047 17.7 0.3 1 23 306 328 306 329 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF23-202 - 585 1.3e-48 159.4 117.6 9 17 1.1e-05 0.011 16.5 0.2 1 23 334 356 334 357 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF23-202 - 585 1.3e-48 159.4 117.6 10 17 4.1e-06 0.0041 17.8 2.1 1 23 362 384 362 385 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF23-202 - 585 1.3e-48 159.4 117.6 11 17 2.1e-05 0.021 15.6 0.2 1 23 390 412 390 413 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF23-202 - 585 1.3e-48 159.4 117.6 12 17 2.3e-05 0.023 15.5 3.3 1 23 418 440 418 441 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF23-202 - 585 1.3e-48 159.4 117.6 13 17 2.3e-05 0.023 15.5 0.4 1 23 446 468 446 469 0.89 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF23-202 - 585 1.3e-48 159.4 117.6 14 17 0.00036 0.36 11.8 2.2 1 23 474 496 474 497 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF23-202 - 585 1.3e-48 159.4 117.6 15 17 3.5e-05 0.035 14.9 2.6 1 23 502 524 502 525 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF23-202 - 585 1.3e-48 159.4 117.6 16 17 0.0023 2.3 9.3 0.4 1 23 530 552 530 553 0.88 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF23-202 - 585 1.3e-48 159.4 117.6 17 17 0.00013 0.13 13.2 1.4 1 23 558 580 558 581 0.93 C2H2-type zinc finger zf-C2H2_11 PF16622.5 29 ZNF23-202 - 585 3.1e-21 74.8 82.3 1 17 3.3 3.3e+03 -2.0 0.3 2 7 68 73 67 75 0.83 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF23-202 - 585 3.1e-21 74.8 82.3 2 17 0.0017 1.7 8.4 0.0 5 18 138 151 134 159 0.81 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF23-202 - 585 3.1e-21 74.8 82.3 3 17 0.018 18 5.2 0.2 5 15 166 176 163 180 0.85 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF23-202 - 585 3.1e-21 74.8 82.3 4 17 7.2e-08 7.2e-05 22.5 0.4 5 26 194 215 191 216 0.94 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF23-202 - 585 3.1e-21 74.8 82.3 5 17 0.02 19 5.1 0.8 5 16 222 233 219 240 0.87 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF23-202 - 585 3.1e-21 74.8 82.3 6 17 0.2 2e+02 1.9 0.0 6 26 251 271 248 272 0.86 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF23-202 - 585 3.1e-21 74.8 82.3 7 17 0.19 1.9e+02 1.9 1.6 6 26 279 299 276 300 0.86 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF23-202 - 585 3.1e-21 74.8 82.3 8 17 0.0096 9.5 6.1 0.1 5 26 306 327 303 328 0.84 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF23-202 - 585 3.1e-21 74.8 82.3 9 17 0.00062 0.62 9.9 0.1 6 26 335 355 332 356 0.93 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF23-202 - 585 3.1e-21 74.8 82.3 10 17 0.1 1e+02 2.8 0.8 6 26 363 383 360 384 0.90 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF23-202 - 585 3.1e-21 74.8 82.3 11 17 6.2e-05 0.062 13.1 0.1 6 26 391 411 388 412 0.93 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF23-202 - 585 3.1e-21 74.8 82.3 12 17 3.5e-06 0.0035 17.1 0.9 6 26 419 439 416 440 0.85 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF23-202 - 585 3.1e-21 74.8 82.3 13 17 1.9e-06 0.0019 17.9 0.1 5 26 446 467 443 468 0.94 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF23-202 - 585 3.1e-21 74.8 82.3 14 17 0.55 5.4e+02 0.5 0.5 5 15 474 484 471 488 0.84 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF23-202 - 585 3.1e-21 74.8 82.3 15 17 0.0031 3.1 7.6 0.2 5 23 502 520 499 522 0.90 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF23-202 - 585 3.1e-21 74.8 82.3 16 17 0.022 22 4.9 0.1 5 15 530 540 527 544 0.84 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF23-202 - 585 3.1e-21 74.8 82.3 17 17 1.5 1.5e+03 -0.9 0.9 7 23 560 576 558 579 0.85 zinc-finger C2H2-type Zn-ribbon_8 PF09723.10 40 ZNF23-202 - 585 4.1e-17 62.0 85.4 1 13 0.0025 2.5 8.3 3.6 6 34 138 173 136 176 0.77 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF23-202 - 585 4.1e-17 62.0 85.4 2 13 0.0013 1.3 9.2 3.0 6 34 166 201 165 202 0.91 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF23-202 - 585 4.1e-17 62.0 85.4 3 13 4.4e-06 0.0044 17.1 1.2 6 34 194 229 193 232 0.92 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF23-202 - 585 4.1e-17 62.0 85.4 4 13 9.6e-06 0.0096 16.0 2.9 6 34 250 285 249 288 0.91 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF23-202 - 585 4.1e-17 62.0 85.4 5 13 0.00014 0.14 12.3 6.5 6 34 278 313 277 322 0.92 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF23-202 - 585 4.1e-17 62.0 85.4 6 13 4.5e-05 0.044 13.9 4.7 6 34 306 341 305 344 0.92 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF23-202 - 585 4.1e-17 62.0 85.4 7 13 1.6e-05 0.016 15.4 4.0 6 35 334 370 333 372 0.91 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF23-202 - 585 4.1e-17 62.0 85.4 8 13 0.0025 2.5 8.3 7.1 6 34 362 397 360 400 0.84 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF23-202 - 585 4.1e-17 62.0 85.4 9 13 0.0002 0.2 11.8 5.4 6 34 390 425 389 433 0.87 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF23-202 - 585 4.1e-17 62.0 85.4 10 13 0.0059 5.9 7.1 7.4 6 34 418 453 417 456 0.88 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF23-202 - 585 4.1e-17 62.0 85.4 11 13 0.00079 0.79 9.9 3.9 6 34 446 481 445 484 0.89 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF23-202 - 585 4.1e-17 62.0 85.4 12 13 0.0055 5.5 7.2 6.0 6 34 474 509 473 514 0.90 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF23-202 - 585 4.1e-17 62.0 85.4 13 13 0.00029 0.29 11.3 0.5 6 36 530 567 529 571 0.89 Zinc ribbon domain zf-C2H2_6 PF13912.6 27 ZNF23-202 - 585 7.1e-12 45.0 106.4 1 16 0.00053 0.53 10.4 0.3 2 24 138 160 138 163 0.81 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF23-202 - 585 7.1e-12 45.0 106.4 2 16 0.011 11 6.2 2.6 2 13 166 177 166 178 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF23-202 - 585 7.1e-12 45.0 106.4 3 16 0.023 23 5.2 0.2 2 12 194 204 194 205 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF23-202 - 585 7.1e-12 45.0 106.4 4 16 0.032 31 4.7 1.1 2 12 222 232 222 242 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF23-202 - 585 7.1e-12 45.0 106.4 5 16 0.028 28 4.9 0.1 2 12 250 260 250 270 0.95 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF23-202 - 585 7.1e-12 45.0 106.4 6 16 0.003 3 8.0 1.3 2 12 278 288 278 298 0.92 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF23-202 - 585 7.1e-12 45.0 106.4 7 16 0.0014 1.4 9.0 0.5 2 20 306 324 306 330 0.78 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF23-202 - 585 7.1e-12 45.0 106.4 8 16 0.00079 0.79 9.8 0.6 2 12 334 344 334 345 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF23-202 - 585 7.1e-12 45.0 106.4 9 16 0.0013 1.3 9.1 0.5 2 12 362 372 362 372 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF23-202 - 585 7.1e-12 45.0 106.4 10 16 0.0012 1.2 9.2 0.6 2 12 390 400 390 401 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF23-202 - 585 7.1e-12 45.0 106.4 11 16 0.012 12 6.0 1.9 2 17 418 433 418 441 0.81 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF23-202 - 585 7.1e-12 45.0 106.4 12 16 0.0024 2.4 8.3 0.5 2 12 446 456 446 457 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF23-202 - 585 7.1e-12 45.0 106.4 13 16 0.11 1.1e+02 2.9 0.7 2 12 474 484 474 484 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF23-202 - 585 7.1e-12 45.0 106.4 14 16 0.0028 2.8 8.0 2.0 2 24 502 524 502 527 0.79 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF23-202 - 585 7.1e-12 45.0 106.4 15 16 0.08 79 3.4 0.6 2 12 530 540 530 540 0.92 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF23-202 - 585 7.1e-12 45.0 106.4 16 16 0.0074 7.4 6.7 0.1 2 12 558 568 558 568 0.87 C2H2-type zinc finger zf_UBZ PF18439.1 32 ZNF23-202 - 585 1.7e-10 40.3 72.9 1 16 0.00042 0.42 10.3 0.1 3 17 138 152 136 156 0.90 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF23-202 - 585 1.7e-10 40.3 72.9 2 16 0.045 45 3.8 0.2 3 14 166 177 164 185 0.81 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF23-202 - 585 1.7e-10 40.3 72.9 3 16 0.02 20 4.9 0.0 3 20 194 212 192 213 0.82 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF23-202 - 585 1.7e-10 40.3 72.9 4 16 0.024 24 4.6 0.5 3 20 222 240 220 241 0.80 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF23-202 - 585 1.7e-10 40.3 72.9 5 16 0.0066 6.6 6.4 0.1 3 21 250 269 248 269 0.87 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF23-202 - 585 1.7e-10 40.3 72.9 6 16 0.015 15 5.3 1.0 3 21 278 297 276 297 0.90 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF23-202 - 585 1.7e-10 40.3 72.9 7 16 0.0071 7.1 6.3 0.1 3 20 306 324 304 325 0.81 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF23-202 - 585 1.7e-10 40.3 72.9 8 16 0.0023 2.3 7.9 0.1 3 21 334 353 332 353 0.88 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF23-202 - 585 1.7e-10 40.3 72.9 9 16 0.016 16 5.2 0.7 3 20 362 380 360 381 0.87 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF23-202 - 585 1.7e-10 40.3 72.9 10 16 0.0033 3.3 7.4 0.1 3 21 390 409 388 409 0.86 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF23-202 - 585 1.7e-10 40.3 72.9 11 16 0.23 2.3e+02 1.5 0.7 3 14 418 429 416 437 0.79 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF23-202 - 585 1.7e-10 40.3 72.9 12 16 0.00068 0.67 9.6 0.1 3 20 446 464 444 465 0.83 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF23-202 - 585 1.7e-10 40.3 72.9 13 16 0.47 4.7e+02 0.5 0.7 3 15 474 486 472 492 0.87 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF23-202 - 585 1.7e-10 40.3 72.9 14 16 0.0087 8.7 6.0 0.2 3 15 502 514 500 521 0.83 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF23-202 - 585 1.7e-10 40.3 72.9 15 16 0.21 2.1e+02 1.6 0.1 3 15 530 542 528 549 0.81 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF23-202 - 585 1.7e-10 40.3 72.9 16 16 0.062 62 3.3 0.0 3 21 558 577 556 577 0.89 Ubiquitin-Binding Zinc Finger C1_4 PF07975.12 55 ZNF23-202 - 585 4.1e-08 33.3 80.4 1 14 6.8e-05 0.068 13.4 0.2 5 49 121 161 117 163 0.82 TFIIH C1-like domain C1_4 PF07975.12 55 ZNF23-202 - 585 4.1e-08 33.3 80.4 2 14 0.00065 0.65 10.3 1.8 1 49 167 217 167 219 0.87 TFIIH C1-like domain C1_4 PF07975.12 55 ZNF23-202 - 585 4.1e-08 33.3 80.4 3 14 0.16 1.6e+02 2.7 1.2 22 48 218 244 210 247 0.73 TFIIH C1-like domain C1_4 PF07975.12 55 ZNF23-202 - 585 4.1e-08 33.3 80.4 4 14 0.019 19 5.6 4.3 5 49 227 273 223 275 0.72 TFIIH C1-like domain C1_4 PF07975.12 55 ZNF23-202 - 585 4.1e-08 33.3 80.4 5 14 0.025 25 5.2 4.2 1 49 251 301 251 304 0.81 TFIIH C1-like domain C1_4 PF07975.12 55 ZNF23-202 - 585 4.1e-08 33.3 80.4 6 14 0.097 96 3.3 3.7 2 48 280 328 279 331 0.71 TFIIH C1-like domain C1_4 PF07975.12 55 ZNF23-202 - 585 4.1e-08 33.3 80.4 7 14 0.00085 0.84 9.9 1.2 2 49 308 357 307 359 0.84 TFIIH C1-like domain C1_4 PF07975.12 55 ZNF23-202 - 585 4.1e-08 33.3 80.4 8 14 0.13 1.3e+02 2.9 5.2 1 35 335 371 335 384 0.80 TFIIH C1-like domain C1_4 PF07975.12 55 ZNF23-202 - 585 4.1e-08 33.3 80.4 9 14 0.0022 2.1 8.6 3.1 2 49 364 413 363 416 0.75 TFIIH C1-like domain C1_4 PF07975.12 55 ZNF23-202 - 585 4.1e-08 33.3 80.4 10 14 0.0028 2.8 8.2 3.3 2 49 420 469 419 471 0.78 TFIIH C1-like domain C1_4 PF07975.12 55 ZNF23-202 - 585 4.1e-08 33.3 80.4 11 14 0.0086 8.5 6.7 5.1 1 49 447 497 447 500 0.86 TFIIH C1-like domain C1_4 PF07975.12 55 ZNF23-202 - 585 4.1e-08 33.3 80.4 12 14 0.025 25 5.2 6.5 1 48 475 524 475 527 0.85 TFIIH C1-like domain C1_4 PF07975.12 55 ZNF23-202 - 585 4.1e-08 33.3 80.4 13 14 0.001 1 9.6 3.6 2 49 504 553 503 556 0.83 TFIIH C1-like domain C1_4 PF07975.12 55 ZNF23-202 - 585 4.1e-08 33.3 80.4 14 14 1.2 1.2e+03 -0.2 0.1 25 48 557 580 553 581 0.77 TFIIH C1-like domain zinc_ribbon_15 PF17032.5 86 ZNF23-202 - 585 7.6e-07 29.8 71.8 1 9 0.0038 3.8 8.3 2.4 32 81 132 181 120 184 0.85 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF23-202 - 585 7.6e-07 29.8 71.8 2 9 0.00066 0.66 10.8 2.6 30 81 186 237 178 240 0.85 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF23-202 - 585 7.6e-07 29.8 71.8 3 9 0.097 97 3.8 10.0 26 75 266 315 233 321 0.57 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF23-202 - 585 7.6e-07 29.8 71.8 4 9 0.00072 0.72 10.6 1.8 33 75 301 343 293 349 0.86 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF23-202 - 585 7.6e-07 29.8 71.8 5 9 0.001 1 10.1 3.3 30 81 326 377 321 380 0.86 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF23-202 - 585 7.6e-07 29.8 71.8 6 9 0.0036 3.6 8.4 1.9 30 77 382 429 377 433 0.82 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF23-202 - 585 7.6e-07 29.8 71.8 7 9 0.0019 1.9 9.3 3.9 31 81 439 489 433 492 0.87 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF23-202 - 585 7.6e-07 29.8 71.8 8 9 0.0014 1.4 9.8 1.8 29 81 493 545 484 549 0.87 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF23-202 - 585 7.6e-07 29.8 71.8 9 9 0.84 8.4e+02 0.8 0.1 31 55 554 575 545 583 0.65 zinc-ribbon family # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF23-202.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF23-202.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF23-202.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF23-202.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF23-202.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:02:05 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZNF23-203 - 643 8e-126 405.4 118.5 1 18 0.41 4e+02 1.7 0.1 2 18 155 171 154 173 0.80 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF23-203 - 643 8e-126 405.4 118.5 2 18 2.7e-06 0.0027 18.1 0.1 10 25 191 206 183 206 0.83 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF23-203 - 643 8e-126 405.4 118.5 3 18 1.9e-09 1.9e-06 28.0 0.4 2 25 211 234 210 235 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF23-203 - 643 8e-126 405.4 118.5 4 18 7.4e-08 7.4e-05 23.0 1.5 4 25 241 262 238 262 0.90 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF23-203 - 643 8e-126 405.4 118.5 5 18 1.8e-11 1.8e-08 34.4 1.0 1 25 266 290 266 291 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF23-203 - 643 8e-126 405.4 118.5 6 18 8.7e-11 8.7e-08 32.3 0.3 4 25 297 318 294 318 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF23-203 - 643 8e-126 405.4 118.5 7 18 2.8e-10 2.8e-07 30.7 1.3 2 25 323 346 322 347 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF23-203 - 643 8e-126 405.4 118.5 8 18 1.9e-11 1.9e-08 34.3 0.3 2 26 351 375 350 375 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF23-203 - 643 8e-126 405.4 118.5 9 18 2.6e-11 2.6e-08 33.9 0.3 2 25 379 402 378 402 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF23-203 - 643 8e-126 405.4 118.5 10 18 8e-11 7.9e-08 32.4 1.3 2 25 407 430 406 431 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF23-203 - 643 8e-126 405.4 118.5 11 18 1.1e-11 1.1e-08 35.1 0.5 2 25 435 458 434 458 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF23-203 - 643 8e-126 405.4 118.5 12 18 6.8e-11 6.8e-08 32.6 1.8 2 26 463 487 462 487 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF23-203 - 643 8e-126 405.4 118.5 13 18 1.3e-10 1.3e-07 31.7 1.0 1 25 490 514 490 514 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF23-203 - 643 8e-126 405.4 118.5 14 18 1.4e-11 1.4e-08 34.8 3.2 2 25 519 542 518 543 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF23-203 - 643 8e-126 405.4 118.5 15 18 2.2e-10 2.1e-07 31.0 1.5 4 24 549 569 546 570 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF23-203 - 643 8e-126 405.4 118.5 16 18 2.6e-10 2.6e-07 30.7 1.0 1 25 574 598 574 598 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF23-203 - 643 8e-126 405.4 118.5 17 18 6.1e-06 0.006 17.0 0.3 5 24 606 625 602 626 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF23-203 - 643 8e-126 405.4 118.5 18 18 6.1 6.1e+03 -2.0 0.0 2 10 631 639 630 642 0.84 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZNF23-203 - 643 1.5e-77 251.9 119.3 1 16 3.3e-07 0.00033 20.9 0.1 1 23 196 218 196 218 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF23-203 - 643 1.5e-77 251.9 119.3 2 16 2.3e-07 0.00023 21.5 2.8 1 23 224 246 224 246 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF23-203 - 643 1.5e-77 251.9 119.3 3 16 2.3e-08 2.3e-05 24.6 0.5 1 23 252 274 252 274 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF23-203 - 643 1.5e-77 251.9 119.3 4 16 0.00016 0.16 12.5 1.5 1 23 280 302 280 302 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF23-203 - 643 1.5e-77 251.9 119.3 5 16 7.9e-08 7.9e-05 22.9 0.1 1 23 308 330 308 330 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF23-203 - 643 1.5e-77 251.9 119.3 6 16 3.5e-06 0.0035 17.7 1.8 1 23 336 358 336 358 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF23-203 - 643 1.5e-77 251.9 119.3 7 16 3.9e-08 3.9e-05 23.9 0.5 1 23 364 386 364 386 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF23-203 - 643 1.5e-77 251.9 119.3 8 16 1.1e-07 0.00011 22.5 0.1 1 23 392 414 392 414 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF23-203 - 643 1.5e-77 251.9 119.3 9 16 2.9e-06 0.0029 18.0 2.5 1 23 420 442 420 442 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF23-203 - 643 1.5e-77 251.9 119.3 10 16 2.4e-08 2.4e-05 24.6 0.2 1 23 448 470 448 470 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF23-203 - 643 1.5e-77 251.9 119.3 11 16 4.4e-07 0.00044 20.6 4.4 1 23 476 498 476 498 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF23-203 - 643 1.5e-77 251.9 119.3 12 16 4.7e-08 4.7e-05 23.6 0.4 1 23 504 526 504 526 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF23-203 - 643 1.5e-77 251.9 119.3 13 16 1.8e-05 0.018 15.4 2.1 1 23 532 554 532 554 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF23-203 - 643 1.5e-77 251.9 119.3 14 16 2.6e-07 0.00026 21.3 2.8 1 23 560 582 560 582 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF23-203 - 643 1.5e-77 251.9 119.3 15 16 2.7e-06 0.0027 18.1 0.3 1 23 588 610 588 610 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF23-203 - 643 1.5e-77 251.9 119.3 16 16 1.7e-06 0.0017 18.7 1.0 1 23 616 638 616 638 0.98 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZNF23-203 - 643 8.8e-48 156.8 117.6 1 17 3 3e+03 -0.4 0.0 8 21 175 188 168 189 0.77 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF23-203 - 643 8.8e-48 156.8 117.6 2 17 0.0025 2.5 9.2 0.3 1 23 196 218 196 219 0.74 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF23-203 - 643 8.8e-48 156.8 117.6 3 17 0.0002 0.2 12.6 2.4 1 23 224 246 224 247 0.91 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF23-203 - 643 8.8e-48 156.8 117.6 4 17 3.2e-06 0.0032 18.2 0.4 1 23 252 274 252 275 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF23-203 - 643 8.8e-48 156.8 117.6 5 17 3.5e-05 0.035 14.9 1.4 1 23 280 302 280 303 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF23-203 - 643 8.8e-48 156.8 117.6 6 17 0.00019 0.19 12.7 0.1 1 23 308 330 308 331 0.91 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF23-203 - 643 8.8e-48 156.8 117.6 7 17 8.5e-06 0.0085 16.9 1.8 1 23 336 358 336 359 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF23-203 - 643 8.8e-48 156.8 117.6 8 17 5.3e-06 0.0053 17.5 0.3 1 23 364 386 364 387 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF23-203 - 643 8.8e-48 156.8 117.6 9 17 1.2e-05 0.012 16.3 0.2 1 23 392 414 392 415 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF23-203 - 643 8.8e-48 156.8 117.6 10 17 4.6e-06 0.0046 17.7 2.1 1 23 420 442 420 443 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF23-203 - 643 8.8e-48 156.8 117.6 11 17 2.4e-05 0.024 15.5 0.2 1 23 448 470 448 471 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF23-203 - 643 8.8e-48 156.8 117.6 12 17 2.6e-05 0.026 15.4 3.3 1 23 476 498 476 499 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF23-203 - 643 8.8e-48 156.8 117.6 13 17 2.6e-05 0.026 15.3 0.4 1 23 504 526 504 527 0.89 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF23-203 - 643 8.8e-48 156.8 117.6 14 17 0.0004 0.4 11.6 2.2 1 23 532 554 532 555 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF23-203 - 643 8.8e-48 156.8 117.6 15 17 4e-05 0.039 14.8 2.6 1 23 560 582 560 583 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF23-203 - 643 8.8e-48 156.8 117.6 16 17 0.0026 2.6 9.1 0.4 1 23 588 610 588 611 0.88 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF23-203 - 643 8.8e-48 156.8 117.6 17 17 0.00014 0.14 13.0 1.4 1 23 616 638 616 639 0.93 C2H2-type zinc finger zf-C2H2_11 PF16622.5 29 ZNF23-203 - 643 1.6e-20 72.5 82.2 1 17 3.7 3.7e+03 -2.2 0.3 2 7 126 131 125 133 0.83 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF23-203 - 643 1.6e-20 72.5 82.2 2 17 0.0019 1.9 8.3 0.0 5 18 196 209 192 217 0.81 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF23-203 - 643 1.6e-20 72.5 82.2 3 17 0.02 20 5.0 0.2 5 15 224 234 221 238 0.85 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF23-203 - 643 1.6e-20 72.5 82.2 4 17 8.1e-08 8e-05 22.3 0.4 5 26 252 273 249 274 0.94 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF23-203 - 643 1.6e-20 72.5 82.2 5 17 0.022 22 4.9 0.8 5 16 280 291 277 298 0.87 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF23-203 - 643 1.6e-20 72.5 82.2 6 17 0.23 2.3e+02 1.7 0.0 6 26 309 329 307 330 0.86 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF23-203 - 643 1.6e-20 72.5 82.2 7 17 0.21 2.1e+02 1.8 1.6 6 26 337 357 334 358 0.86 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF23-203 - 643 1.6e-20 72.5 82.2 8 17 0.011 11 5.9 0.1 5 26 364 385 361 386 0.84 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF23-203 - 643 1.6e-20 72.5 82.2 9 17 0.00069 0.69 9.7 0.1 6 26 393 413 390 414 0.93 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF23-203 - 643 1.6e-20 72.5 82.2 10 17 0.11 1.1e+02 2.7 0.8 6 26 421 441 418 442 0.90 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF23-203 - 643 1.6e-20 72.5 82.2 11 17 7e-05 0.069 12.9 0.1 6 26 449 469 446 470 0.93 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF23-203 - 643 1.6e-20 72.5 82.2 12 17 3.9e-06 0.0039 16.9 0.9 6 26 477 497 474 498 0.85 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF23-203 - 643 1.6e-20 72.5 82.2 13 17 2.1e-06 0.0021 17.8 0.1 5 26 504 525 501 526 0.94 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF23-203 - 643 1.6e-20 72.5 82.2 14 17 0.61 6e+02 0.3 0.5 5 15 532 542 529 546 0.84 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF23-203 - 643 1.6e-20 72.5 82.2 15 17 0.0035 3.5 7.5 0.2 5 23 560 578 557 580 0.90 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF23-203 - 643 1.6e-20 72.5 82.2 16 17 0.024 24 4.8 0.1 5 15 588 598 585 602 0.84 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF23-203 - 643 1.6e-20 72.5 82.2 17 17 1.7 1.6e+03 -1.1 0.9 7 23 618 634 616 637 0.85 zinc-finger C2H2-type Zn-ribbon_8 PF09723.10 40 ZNF23-203 - 643 4.6e-17 61.8 83.9 1 14 0.0029 2.8 8.1 3.6 6 34 196 231 195 234 0.76 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF23-203 - 643 4.6e-17 61.8 83.9 2 14 0.00079 0.78 9.9 2.7 6 34 224 259 223 262 0.90 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF23-203 - 643 4.6e-17 61.8 83.9 3 14 5.3e-06 0.0052 16.9 1.3 6 34 252 287 251 290 0.92 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF23-203 - 643 4.6e-17 61.8 83.9 4 14 1.1e-05 0.011 15.8 3.0 6 34 308 343 307 346 0.91 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF23-203 - 643 4.6e-17 61.8 83.9 5 14 0.00015 0.15 12.2 6.4 6 34 336 371 335 380 0.92 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF23-203 - 643 4.6e-17 61.8 83.9 6 14 2.8e-05 0.028 14.5 4.1 6 34 364 399 363 404 0.91 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF23-203 - 643 4.6e-17 61.8 83.9 7 14 2.1e-05 0.021 15.0 4.3 6 36 392 429 391 431 0.91 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF23-203 - 643 4.6e-17 61.8 83.9 8 14 0.0017 1.7 8.8 6.4 6 34 420 455 419 458 0.84 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF23-203 - 643 4.6e-17 61.8 83.9 9 14 0.00019 0.19 11.9 5.2 6 34 448 483 447 491 0.87 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF23-203 - 643 4.6e-17 61.8 83.9 10 14 0.0059 5.9 7.1 7.2 6 34 476 511 475 514 0.88 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF23-203 - 643 4.6e-17 61.8 83.9 11 14 0.00084 0.83 9.8 3.9 6 34 504 539 503 542 0.89 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF23-203 - 643 4.6e-17 61.8 83.9 12 14 0.0071 7.1 6.8 6.2 6 34 532 567 531 572 0.90 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF23-203 - 643 4.6e-17 61.8 83.9 13 14 0.013 13 6.0 0.4 6 17 560 571 559 581 0.84 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF23-203 - 643 4.6e-17 61.8 83.9 14 14 0.00033 0.33 11.1 0.5 6 36 588 625 587 629 0.89 Zinc ribbon domain zf-C2H2_6 PF13912.6 27 ZNF23-203 - 643 3.9e-11 42.7 106.4 1 16 0.00059 0.59 10.2 0.3 2 24 196 218 196 221 0.81 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF23-203 - 643 3.9e-11 42.7 106.4 2 16 0.012 12 6.0 2.6 2 13 224 235 224 236 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF23-203 - 643 3.9e-11 42.7 106.4 3 16 0.025 25 5.0 0.2 2 12 252 262 252 263 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF23-203 - 643 3.9e-11 42.7 106.4 4 16 0.035 35 4.5 1.1 2 12 280 290 280 300 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF23-203 - 643 3.9e-11 42.7 106.4 5 16 0.031 31 4.7 0.1 2 12 308 318 308 328 0.95 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF23-203 - 643 3.9e-11 42.7 106.4 6 16 0.0033 3.3 7.8 1.3 2 12 336 346 336 356 0.92 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF23-203 - 643 3.9e-11 42.7 106.4 7 16 0.0016 1.6 8.8 0.4 2 20 364 382 364 388 0.78 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF23-203 - 643 3.9e-11 42.7 106.4 8 16 0.00088 0.88 9.7 0.6 2 12 392 402 392 403 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF23-203 - 643 3.9e-11 42.7 106.4 9 16 0.0014 1.4 9.0 0.5 2 12 420 430 420 430 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF23-203 - 643 3.9e-11 42.7 106.4 10 16 0.0013 1.3 9.1 0.6 2 12 448 458 448 459 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF23-203 - 643 3.9e-11 42.7 106.4 11 16 0.014 14 5.9 1.9 2 17 476 491 476 499 0.81 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF23-203 - 643 3.9e-11 42.7 106.4 12 16 0.0027 2.7 8.1 0.5 2 12 504 514 504 515 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF23-203 - 643 3.9e-11 42.7 106.4 13 16 0.13 1.3e+02 2.8 0.7 2 12 532 542 532 542 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF23-203 - 643 3.9e-11 42.7 106.4 14 16 0.0031 3.1 7.9 2.0 2 24 560 582 560 585 0.78 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF23-203 - 643 3.9e-11 42.7 106.4 15 16 0.088 88 3.3 0.6 2 12 588 598 588 598 0.92 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF23-203 - 643 3.9e-11 42.7 106.4 16 16 0.0082 8.2 6.6 0.1 2 12 616 626 616 626 0.87 C2H2-type zinc finger zf_UBZ PF18439.1 32 ZNF23-203 - 643 9.2e-10 37.9 72.9 1 16 0.00047 0.46 10.1 0.1 3 17 196 210 194 214 0.90 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF23-203 - 643 9.2e-10 37.9 72.9 2 16 0.05 50 3.6 0.2 3 14 224 235 222 243 0.81 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF23-203 - 643 9.2e-10 37.9 72.9 3 16 0.022 22 4.7 0.0 3 20 252 270 250 271 0.82 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF23-203 - 643 9.2e-10 37.9 72.9 4 16 0.027 27 4.5 0.5 3 20 280 298 278 299 0.80 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF23-203 - 643 9.2e-10 37.9 72.9 5 16 0.0074 7.4 6.3 0.1 3 21 308 327 306 327 0.87 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF23-203 - 643 9.2e-10 37.9 72.9 6 16 0.017 17 5.1 1.0 3 21 336 355 334 355 0.90 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF23-203 - 643 9.2e-10 37.9 72.9 7 16 0.0079 7.9 6.2 0.1 3 20 364 382 362 383 0.81 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF23-203 - 643 9.2e-10 37.9 72.9 8 16 0.0025 2.5 7.8 0.1 3 21 392 411 390 411 0.88 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF23-203 - 643 9.2e-10 37.9 72.9 9 16 0.018 18 5.0 0.7 3 20 420 438 418 439 0.87 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF23-203 - 643 9.2e-10 37.9 72.9 10 16 0.0037 3.7 7.2 0.1 3 21 448 467 446 467 0.86 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF23-203 - 643 9.2e-10 37.9 72.9 11 16 0.26 2.6e+02 1.3 0.7 3 14 476 487 474 495 0.79 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF23-203 - 643 9.2e-10 37.9 72.9 12 16 0.00075 0.75 9.4 0.1 3 20 504 522 502 523 0.83 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF23-203 - 643 9.2e-10 37.9 72.9 13 16 0.52 5.2e+02 0.3 0.7 3 15 532 544 530 550 0.87 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF23-203 - 643 9.2e-10 37.9 72.9 14 16 0.0097 9.6 5.9 0.2 3 15 560 572 558 579 0.83 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF23-203 - 643 9.2e-10 37.9 72.9 15 16 0.23 2.3e+02 1.5 0.1 3 15 588 600 586 607 0.81 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF23-203 - 643 9.2e-10 37.9 72.9 16 16 0.069 69 3.2 0.0 3 21 616 635 614 635 0.89 Ubiquitin-Binding Zinc Finger C1_4 PF07975.12 55 ZNF23-203 - 643 6.6e-08 32.7 79.3 1 14 7.7e-05 0.076 13.3 0.2 5 49 179 219 175 221 0.82 TFIIH C1-like domain C1_4 PF07975.12 55 ZNF23-203 - 643 6.6e-08 32.7 79.3 2 14 0.00071 0.71 10.1 1.7 1 49 225 275 225 277 0.87 TFIIH C1-like domain C1_4 PF07975.12 55 ZNF23-203 - 643 6.6e-08 32.7 79.3 3 14 0.1 1e+02 3.2 0.7 21 48 275 302 264 304 0.72 TFIIH C1-like domain C1_4 PF07975.12 55 ZNF23-203 - 643 6.6e-08 32.7 79.3 4 14 0.02 20 5.5 4.2 5 49 285 331 281 333 0.72 TFIIH C1-like domain C1_4 PF07975.12 55 ZNF23-203 - 643 6.6e-08 32.7 79.3 5 14 0.026 26 5.1 4.0 1 49 309 359 309 361 0.81 TFIIH C1-like domain C1_4 PF07975.12 55 ZNF23-203 - 643 6.6e-08 32.7 79.3 6 14 0.098 97 3.3 3.6 2 48 338 386 337 389 0.71 TFIIH C1-like domain C1_4 PF07975.12 55 ZNF23-203 - 643 6.6e-08 32.7 79.3 7 14 0.00087 0.86 9.9 1.1 2 49 366 415 365 417 0.84 TFIIH C1-like domain C1_4 PF07975.12 55 ZNF23-203 - 643 6.6e-08 32.7 79.3 8 14 0.12 1.2e+02 3.0 4.9 1 35 393 429 393 442 0.80 TFIIH C1-like domain C1_4 PF07975.12 55 ZNF23-203 - 643 6.6e-08 32.7 79.3 9 14 0.002 2 8.7 2.8 2 49 422 471 421 474 0.75 TFIIH C1-like domain C1_4 PF07975.12 55 ZNF23-203 - 643 6.6e-08 32.7 79.3 10 14 0.0029 2.9 8.2 3.2 2 49 478 527 477 529 0.78 TFIIH C1-like domain C1_4 PF07975.12 55 ZNF23-203 - 643 6.6e-08 32.7 79.3 11 14 0.029 29 5.0 1.4 21 49 527 555 518 558 0.84 TFIIH C1-like domain C1_4 PF07975.12 55 ZNF23-203 - 643 6.6e-08 32.7 79.3 12 14 0.023 23 5.3 6.2 1 48 533 582 533 585 0.85 TFIIH C1-like domain C1_4 PF07975.12 55 ZNF23-203 - 643 6.6e-08 32.7 79.3 13 14 0.0011 1.1 9.5 3.5 2 49 562 611 561 613 0.83 TFIIH C1-like domain C1_4 PF07975.12 55 ZNF23-203 - 643 6.6e-08 32.7 79.3 14 14 1.4 1.4e+03 -0.4 0.1 25 48 615 638 611 639 0.77 TFIIH C1-like domain # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF23-203.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF23-203.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF23-203.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF23-203.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF23-203.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:02:05 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF23-204.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF23-204.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF23-204.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF23-204.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF23-204.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:02:05 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZNF23-205 - 585 1.2e-126 408.1 118.5 1 18 0.36 3.6e+02 1.8 0.1 2 18 97 113 96 115 0.80 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF23-205 - 585 1.2e-126 408.1 118.5 2 18 2.4e-06 0.0024 18.2 0.1 10 25 133 148 125 148 0.83 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF23-205 - 585 1.2e-126 408.1 118.5 3 18 1.7e-09 1.7e-06 28.2 0.4 2 25 153 176 152 177 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF23-205 - 585 1.2e-126 408.1 118.5 4 18 6.6e-08 6.6e-05 23.2 1.5 4 25 183 204 180 204 0.90 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF23-205 - 585 1.2e-126 408.1 118.5 5 18 1.6e-11 1.6e-08 34.6 1.0 1 25 208 232 208 233 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF23-205 - 585 1.2e-126 408.1 118.5 6 18 7.8e-11 7.8e-08 32.4 0.3 4 25 239 260 236 260 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF23-205 - 585 1.2e-126 408.1 118.5 7 18 2.5e-10 2.5e-07 30.8 1.3 2 25 265 288 264 289 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF23-205 - 585 1.2e-126 408.1 118.5 8 18 1.7e-11 1.7e-08 34.5 0.3 2 26 293 317 292 317 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF23-205 - 585 1.2e-126 408.1 118.5 9 18 2.3e-11 2.3e-08 34.1 0.3 2 25 321 344 320 344 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF23-205 - 585 1.2e-126 408.1 118.5 10 18 7.1e-11 7.1e-08 32.5 1.3 2 25 349 372 348 373 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF23-205 - 585 1.2e-126 408.1 118.5 11 18 9.7e-12 9.7e-09 35.3 0.5 2 25 377 400 376 400 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF23-205 - 585 1.2e-126 408.1 118.5 12 18 6.1e-11 6.1e-08 32.8 1.8 2 26 405 429 404 429 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF23-205 - 585 1.2e-126 408.1 118.5 13 18 1.2e-10 1.2e-07 31.9 1.0 1 25 432 456 432 456 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF23-205 - 585 1.2e-126 408.1 118.5 14 18 1.3e-11 1.3e-08 34.9 3.2 2 25 461 484 460 485 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF23-205 - 585 1.2e-126 408.1 118.5 15 18 1.9e-10 1.9e-07 31.2 1.5 4 24 491 511 488 512 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF23-205 - 585 1.2e-126 408.1 118.5 16 18 2.4e-10 2.3e-07 30.9 1.0 1 25 516 540 516 540 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF23-205 - 585 1.2e-126 408.1 118.5 17 18 5.4e-06 0.0054 17.1 0.3 5 24 548 567 544 568 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF23-205 - 585 1.2e-126 408.1 118.5 18 18 5.5 5.5e+03 -1.9 0.0 2 10 573 581 572 584 0.84 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZNF23-205 - 585 2.4e-78 254.4 119.3 1 16 3e-07 0.0003 21.1 0.1 1 23 138 160 138 160 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF23-205 - 585 2.4e-78 254.4 119.3 2 16 2e-07 0.0002 21.6 2.8 1 23 166 188 166 188 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF23-205 - 585 2.4e-78 254.4 119.3 3 16 2.1e-08 2e-05 24.7 0.5 1 23 194 216 194 216 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF23-205 - 585 2.4e-78 254.4 119.3 4 16 0.00014 0.14 12.6 1.5 1 23 222 244 222 244 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF23-205 - 585 2.4e-78 254.4 119.3 5 16 7.1e-08 7.1e-05 23.1 0.1 1 23 250 272 250 272 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF23-205 - 585 2.4e-78 254.4 119.3 6 16 3.2e-06 0.0032 17.9 1.8 1 23 278 300 278 300 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF23-205 - 585 2.4e-78 254.4 119.3 7 16 3.5e-08 3.5e-05 24.0 0.5 1 23 306 328 306 328 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF23-205 - 585 2.4e-78 254.4 119.3 8 16 9.9e-08 9.8e-05 22.6 0.1 1 23 334 356 334 356 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF23-205 - 585 2.4e-78 254.4 119.3 9 16 2.6e-06 0.0026 18.1 2.5 1 23 362 384 362 384 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF23-205 - 585 2.4e-78 254.4 119.3 10 16 2.1e-08 2.1e-05 24.7 0.2 1 23 390 412 390 412 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF23-205 - 585 2.4e-78 254.4 119.3 11 16 4e-07 0.00039 20.7 4.4 1 23 418 440 418 440 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF23-205 - 585 2.4e-78 254.4 119.3 12 16 4.2e-08 4.2e-05 23.8 0.4 1 23 446 468 446 468 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF23-205 - 585 2.4e-78 254.4 119.3 13 16 1.7e-05 0.016 15.6 2.1 1 23 474 496 474 496 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF23-205 - 585 2.4e-78 254.4 119.3 14 16 2.4e-07 0.00024 21.4 2.8 1 23 502 524 502 524 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF23-205 - 585 2.4e-78 254.4 119.3 15 16 2.4e-06 0.0024 18.2 0.3 1 23 530 552 530 552 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF23-205 - 585 2.4e-78 254.4 119.3 16 16 1.5e-06 0.0015 18.8 1.0 1 23 558 580 558 580 0.98 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZNF23-205 - 585 1.3e-48 159.4 117.6 1 17 2.7 2.7e+03 -0.3 0.0 8 21 117 130 110 131 0.77 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF23-205 - 585 1.3e-48 159.4 117.6 2 17 0.0022 2.2 9.3 0.3 1 23 138 160 138 161 0.74 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF23-205 - 585 1.3e-48 159.4 117.6 3 17 0.00018 0.18 12.7 2.4 1 23 166 188 166 189 0.91 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF23-205 - 585 1.3e-48 159.4 117.6 4 17 2.9e-06 0.0029 18.3 0.4 1 23 194 216 194 217 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF23-205 - 585 1.3e-48 159.4 117.6 5 17 3.1e-05 0.031 15.1 1.4 1 23 222 244 222 245 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF23-205 - 585 1.3e-48 159.4 117.6 6 17 0.00017 0.17 12.8 0.1 1 23 250 272 250 273 0.91 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF23-205 - 585 1.3e-48 159.4 117.6 7 17 7.6e-06 0.0076 17.0 1.8 1 23 278 300 278 301 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF23-205 - 585 1.3e-48 159.4 117.6 8 17 4.7e-06 0.0047 17.7 0.3 1 23 306 328 306 329 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF23-205 - 585 1.3e-48 159.4 117.6 9 17 1.1e-05 0.011 16.5 0.2 1 23 334 356 334 357 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF23-205 - 585 1.3e-48 159.4 117.6 10 17 4.1e-06 0.0041 17.8 2.1 1 23 362 384 362 385 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF23-205 - 585 1.3e-48 159.4 117.6 11 17 2.1e-05 0.021 15.6 0.2 1 23 390 412 390 413 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF23-205 - 585 1.3e-48 159.4 117.6 12 17 2.3e-05 0.023 15.5 3.3 1 23 418 440 418 441 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF23-205 - 585 1.3e-48 159.4 117.6 13 17 2.3e-05 0.023 15.5 0.4 1 23 446 468 446 469 0.89 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF23-205 - 585 1.3e-48 159.4 117.6 14 17 0.00036 0.36 11.8 2.2 1 23 474 496 474 497 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF23-205 - 585 1.3e-48 159.4 117.6 15 17 3.5e-05 0.035 14.9 2.6 1 23 502 524 502 525 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF23-205 - 585 1.3e-48 159.4 117.6 16 17 0.0023 2.3 9.3 0.4 1 23 530 552 530 553 0.88 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF23-205 - 585 1.3e-48 159.4 117.6 17 17 0.00013 0.13 13.2 1.4 1 23 558 580 558 581 0.93 C2H2-type zinc finger zf-C2H2_11 PF16622.5 29 ZNF23-205 - 585 3.1e-21 74.8 82.3 1 17 3.3 3.3e+03 -2.0 0.3 2 7 68 73 67 75 0.83 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF23-205 - 585 3.1e-21 74.8 82.3 2 17 0.0017 1.7 8.4 0.0 5 18 138 151 134 159 0.81 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF23-205 - 585 3.1e-21 74.8 82.3 3 17 0.018 18 5.2 0.2 5 15 166 176 163 180 0.85 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF23-205 - 585 3.1e-21 74.8 82.3 4 17 7.2e-08 7.2e-05 22.5 0.4 5 26 194 215 191 216 0.94 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF23-205 - 585 3.1e-21 74.8 82.3 5 17 0.02 19 5.1 0.8 5 16 222 233 219 240 0.87 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF23-205 - 585 3.1e-21 74.8 82.3 6 17 0.2 2e+02 1.9 0.0 6 26 251 271 248 272 0.86 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF23-205 - 585 3.1e-21 74.8 82.3 7 17 0.19 1.9e+02 1.9 1.6 6 26 279 299 276 300 0.86 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF23-205 - 585 3.1e-21 74.8 82.3 8 17 0.0096 9.5 6.1 0.1 5 26 306 327 303 328 0.84 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF23-205 - 585 3.1e-21 74.8 82.3 9 17 0.00062 0.62 9.9 0.1 6 26 335 355 332 356 0.93 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF23-205 - 585 3.1e-21 74.8 82.3 10 17 0.1 1e+02 2.8 0.8 6 26 363 383 360 384 0.90 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF23-205 - 585 3.1e-21 74.8 82.3 11 17 6.2e-05 0.062 13.1 0.1 6 26 391 411 388 412 0.93 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF23-205 - 585 3.1e-21 74.8 82.3 12 17 3.5e-06 0.0035 17.1 0.9 6 26 419 439 416 440 0.85 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF23-205 - 585 3.1e-21 74.8 82.3 13 17 1.9e-06 0.0019 17.9 0.1 5 26 446 467 443 468 0.94 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF23-205 - 585 3.1e-21 74.8 82.3 14 17 0.55 5.4e+02 0.5 0.5 5 15 474 484 471 488 0.84 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF23-205 - 585 3.1e-21 74.8 82.3 15 17 0.0031 3.1 7.6 0.2 5 23 502 520 499 522 0.90 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF23-205 - 585 3.1e-21 74.8 82.3 16 17 0.022 22 4.9 0.1 5 15 530 540 527 544 0.84 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF23-205 - 585 3.1e-21 74.8 82.3 17 17 1.5 1.5e+03 -0.9 0.9 7 23 560 576 558 579 0.85 zinc-finger C2H2-type Zn-ribbon_8 PF09723.10 40 ZNF23-205 - 585 4.1e-17 62.0 85.4 1 13 0.0025 2.5 8.3 3.6 6 34 138 173 136 176 0.77 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF23-205 - 585 4.1e-17 62.0 85.4 2 13 0.0013 1.3 9.2 3.0 6 34 166 201 165 202 0.91 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF23-205 - 585 4.1e-17 62.0 85.4 3 13 4.4e-06 0.0044 17.1 1.2 6 34 194 229 193 232 0.92 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF23-205 - 585 4.1e-17 62.0 85.4 4 13 9.6e-06 0.0096 16.0 2.9 6 34 250 285 249 288 0.91 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF23-205 - 585 4.1e-17 62.0 85.4 5 13 0.00014 0.14 12.3 6.5 6 34 278 313 277 322 0.92 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF23-205 - 585 4.1e-17 62.0 85.4 6 13 4.5e-05 0.044 13.9 4.7 6 34 306 341 305 344 0.92 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF23-205 - 585 4.1e-17 62.0 85.4 7 13 1.6e-05 0.016 15.4 4.0 6 35 334 370 333 372 0.91 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF23-205 - 585 4.1e-17 62.0 85.4 8 13 0.0025 2.5 8.3 7.1 6 34 362 397 360 400 0.84 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF23-205 - 585 4.1e-17 62.0 85.4 9 13 0.0002 0.2 11.8 5.4 6 34 390 425 389 433 0.87 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF23-205 - 585 4.1e-17 62.0 85.4 10 13 0.0059 5.9 7.1 7.4 6 34 418 453 417 456 0.88 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF23-205 - 585 4.1e-17 62.0 85.4 11 13 0.00079 0.79 9.9 3.9 6 34 446 481 445 484 0.89 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF23-205 - 585 4.1e-17 62.0 85.4 12 13 0.0055 5.5 7.2 6.0 6 34 474 509 473 514 0.90 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF23-205 - 585 4.1e-17 62.0 85.4 13 13 0.00029 0.29 11.3 0.5 6 36 530 567 529 571 0.89 Zinc ribbon domain zf-C2H2_6 PF13912.6 27 ZNF23-205 - 585 7.1e-12 45.0 106.4 1 16 0.00053 0.53 10.4 0.3 2 24 138 160 138 163 0.81 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF23-205 - 585 7.1e-12 45.0 106.4 2 16 0.011 11 6.2 2.6 2 13 166 177 166 178 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF23-205 - 585 7.1e-12 45.0 106.4 3 16 0.023 23 5.2 0.2 2 12 194 204 194 205 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF23-205 - 585 7.1e-12 45.0 106.4 4 16 0.032 31 4.7 1.1 2 12 222 232 222 242 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF23-205 - 585 7.1e-12 45.0 106.4 5 16 0.028 28 4.9 0.1 2 12 250 260 250 270 0.95 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF23-205 - 585 7.1e-12 45.0 106.4 6 16 0.003 3 8.0 1.3 2 12 278 288 278 298 0.92 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF23-205 - 585 7.1e-12 45.0 106.4 7 16 0.0014 1.4 9.0 0.5 2 20 306 324 306 330 0.78 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF23-205 - 585 7.1e-12 45.0 106.4 8 16 0.00079 0.79 9.8 0.6 2 12 334 344 334 345 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF23-205 - 585 7.1e-12 45.0 106.4 9 16 0.0013 1.3 9.1 0.5 2 12 362 372 362 372 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF23-205 - 585 7.1e-12 45.0 106.4 10 16 0.0012 1.2 9.2 0.6 2 12 390 400 390 401 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF23-205 - 585 7.1e-12 45.0 106.4 11 16 0.012 12 6.0 1.9 2 17 418 433 418 441 0.81 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF23-205 - 585 7.1e-12 45.0 106.4 12 16 0.0024 2.4 8.3 0.5 2 12 446 456 446 457 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF23-205 - 585 7.1e-12 45.0 106.4 13 16 0.11 1.1e+02 2.9 0.7 2 12 474 484 474 484 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF23-205 - 585 7.1e-12 45.0 106.4 14 16 0.0028 2.8 8.0 2.0 2 24 502 524 502 527 0.79 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF23-205 - 585 7.1e-12 45.0 106.4 15 16 0.08 79 3.4 0.6 2 12 530 540 530 540 0.92 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF23-205 - 585 7.1e-12 45.0 106.4 16 16 0.0074 7.4 6.7 0.1 2 12 558 568 558 568 0.87 C2H2-type zinc finger zf_UBZ PF18439.1 32 ZNF23-205 - 585 1.7e-10 40.3 72.9 1 16 0.00042 0.42 10.3 0.1 3 17 138 152 136 156 0.90 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF23-205 - 585 1.7e-10 40.3 72.9 2 16 0.045 45 3.8 0.2 3 14 166 177 164 185 0.81 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF23-205 - 585 1.7e-10 40.3 72.9 3 16 0.02 20 4.9 0.0 3 20 194 212 192 213 0.82 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF23-205 - 585 1.7e-10 40.3 72.9 4 16 0.024 24 4.6 0.5 3 20 222 240 220 241 0.80 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF23-205 - 585 1.7e-10 40.3 72.9 5 16 0.0066 6.6 6.4 0.1 3 21 250 269 248 269 0.87 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF23-205 - 585 1.7e-10 40.3 72.9 6 16 0.015 15 5.3 1.0 3 21 278 297 276 297 0.90 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF23-205 - 585 1.7e-10 40.3 72.9 7 16 0.0071 7.1 6.3 0.1 3 20 306 324 304 325 0.81 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF23-205 - 585 1.7e-10 40.3 72.9 8 16 0.0023 2.3 7.9 0.1 3 21 334 353 332 353 0.88 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF23-205 - 585 1.7e-10 40.3 72.9 9 16 0.016 16 5.2 0.7 3 20 362 380 360 381 0.87 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF23-205 - 585 1.7e-10 40.3 72.9 10 16 0.0033 3.3 7.4 0.1 3 21 390 409 388 409 0.86 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF23-205 - 585 1.7e-10 40.3 72.9 11 16 0.23 2.3e+02 1.5 0.7 3 14 418 429 416 437 0.79 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF23-205 - 585 1.7e-10 40.3 72.9 12 16 0.00068 0.67 9.6 0.1 3 20 446 464 444 465 0.83 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF23-205 - 585 1.7e-10 40.3 72.9 13 16 0.47 4.7e+02 0.5 0.7 3 15 474 486 472 492 0.87 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF23-205 - 585 1.7e-10 40.3 72.9 14 16 0.0087 8.7 6.0 0.2 3 15 502 514 500 521 0.83 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF23-205 - 585 1.7e-10 40.3 72.9 15 16 0.21 2.1e+02 1.6 0.1 3 15 530 542 528 549 0.81 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF23-205 - 585 1.7e-10 40.3 72.9 16 16 0.062 62 3.3 0.0 3 21 558 577 556 577 0.89 Ubiquitin-Binding Zinc Finger C1_4 PF07975.12 55 ZNF23-205 - 585 4.1e-08 33.3 80.4 1 14 6.8e-05 0.068 13.4 0.2 5 49 121 161 117 163 0.82 TFIIH C1-like domain C1_4 PF07975.12 55 ZNF23-205 - 585 4.1e-08 33.3 80.4 2 14 0.00065 0.65 10.3 1.8 1 49 167 217 167 219 0.87 TFIIH C1-like domain C1_4 PF07975.12 55 ZNF23-205 - 585 4.1e-08 33.3 80.4 3 14 0.16 1.6e+02 2.7 1.2 22 48 218 244 210 247 0.73 TFIIH C1-like domain C1_4 PF07975.12 55 ZNF23-205 - 585 4.1e-08 33.3 80.4 4 14 0.019 19 5.6 4.3 5 49 227 273 223 275 0.72 TFIIH C1-like domain C1_4 PF07975.12 55 ZNF23-205 - 585 4.1e-08 33.3 80.4 5 14 0.025 25 5.2 4.2 1 49 251 301 251 304 0.81 TFIIH C1-like domain C1_4 PF07975.12 55 ZNF23-205 - 585 4.1e-08 33.3 80.4 6 14 0.097 96 3.3 3.7 2 48 280 328 279 331 0.71 TFIIH C1-like domain C1_4 PF07975.12 55 ZNF23-205 - 585 4.1e-08 33.3 80.4 7 14 0.00085 0.84 9.9 1.2 2 49 308 357 307 359 0.84 TFIIH C1-like domain C1_4 PF07975.12 55 ZNF23-205 - 585 4.1e-08 33.3 80.4 8 14 0.13 1.3e+02 2.9 5.2 1 35 335 371 335 384 0.80 TFIIH C1-like domain C1_4 PF07975.12 55 ZNF23-205 - 585 4.1e-08 33.3 80.4 9 14 0.0022 2.1 8.6 3.1 2 49 364 413 363 416 0.75 TFIIH C1-like domain C1_4 PF07975.12 55 ZNF23-205 - 585 4.1e-08 33.3 80.4 10 14 0.0028 2.8 8.2 3.3 2 49 420 469 419 471 0.78 TFIIH C1-like domain C1_4 PF07975.12 55 ZNF23-205 - 585 4.1e-08 33.3 80.4 11 14 0.0086 8.5 6.7 5.1 1 49 447 497 447 500 0.86 TFIIH C1-like domain C1_4 PF07975.12 55 ZNF23-205 - 585 4.1e-08 33.3 80.4 12 14 0.025 25 5.2 6.5 1 48 475 524 475 527 0.85 TFIIH C1-like domain C1_4 PF07975.12 55 ZNF23-205 - 585 4.1e-08 33.3 80.4 13 14 0.001 1 9.6 3.6 2 49 504 553 503 556 0.83 TFIIH C1-like domain C1_4 PF07975.12 55 ZNF23-205 - 585 4.1e-08 33.3 80.4 14 14 1.2 1.2e+03 -0.2 0.1 25 48 557 580 553 581 0.77 TFIIH C1-like domain zinc_ribbon_15 PF17032.5 86 ZNF23-205 - 585 7.6e-07 29.8 71.8 1 9 0.0038 3.8 8.3 2.4 32 81 132 181 120 184 0.85 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF23-205 - 585 7.6e-07 29.8 71.8 2 9 0.00066 0.66 10.8 2.6 30 81 186 237 178 240 0.85 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF23-205 - 585 7.6e-07 29.8 71.8 3 9 0.097 97 3.8 10.0 26 75 266 315 233 321 0.57 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF23-205 - 585 7.6e-07 29.8 71.8 4 9 0.00072 0.72 10.6 1.8 33 75 301 343 293 349 0.86 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF23-205 - 585 7.6e-07 29.8 71.8 5 9 0.001 1 10.1 3.3 30 81 326 377 321 380 0.86 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF23-205 - 585 7.6e-07 29.8 71.8 6 9 0.0036 3.6 8.4 1.9 30 77 382 429 377 433 0.82 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF23-205 - 585 7.6e-07 29.8 71.8 7 9 0.0019 1.9 9.3 3.9 31 81 439 489 433 492 0.87 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF23-205 - 585 7.6e-07 29.8 71.8 8 9 0.0014 1.4 9.8 1.8 29 81 493 545 484 549 0.87 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF23-205 - 585 7.6e-07 29.8 71.8 9 9 0.84 8.4e+02 0.8 0.1 31 55 554 575 545 583 0.65 zinc-ribbon family # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF23-205.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF23-205.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF23-205.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF23-205.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF23-205.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:02:06 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZNF23-206 - 585 1.2e-126 408.1 118.5 1 18 0.36 3.6e+02 1.8 0.1 2 18 97 113 96 115 0.80 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF23-206 - 585 1.2e-126 408.1 118.5 2 18 2.4e-06 0.0024 18.2 0.1 10 25 133 148 125 148 0.83 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF23-206 - 585 1.2e-126 408.1 118.5 3 18 1.7e-09 1.7e-06 28.2 0.4 2 25 153 176 152 177 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF23-206 - 585 1.2e-126 408.1 118.5 4 18 6.6e-08 6.6e-05 23.2 1.5 4 25 183 204 180 204 0.90 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF23-206 - 585 1.2e-126 408.1 118.5 5 18 1.6e-11 1.6e-08 34.6 1.0 1 25 208 232 208 233 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF23-206 - 585 1.2e-126 408.1 118.5 6 18 7.8e-11 7.8e-08 32.4 0.3 4 25 239 260 236 260 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF23-206 - 585 1.2e-126 408.1 118.5 7 18 2.5e-10 2.5e-07 30.8 1.3 2 25 265 288 264 289 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF23-206 - 585 1.2e-126 408.1 118.5 8 18 1.7e-11 1.7e-08 34.5 0.3 2 26 293 317 292 317 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF23-206 - 585 1.2e-126 408.1 118.5 9 18 2.3e-11 2.3e-08 34.1 0.3 2 25 321 344 320 344 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF23-206 - 585 1.2e-126 408.1 118.5 10 18 7.1e-11 7.1e-08 32.5 1.3 2 25 349 372 348 373 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF23-206 - 585 1.2e-126 408.1 118.5 11 18 9.7e-12 9.7e-09 35.3 0.5 2 25 377 400 376 400 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF23-206 - 585 1.2e-126 408.1 118.5 12 18 6.1e-11 6.1e-08 32.8 1.8 2 26 405 429 404 429 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF23-206 - 585 1.2e-126 408.1 118.5 13 18 1.2e-10 1.2e-07 31.9 1.0 1 25 432 456 432 456 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF23-206 - 585 1.2e-126 408.1 118.5 14 18 1.3e-11 1.3e-08 34.9 3.2 2 25 461 484 460 485 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF23-206 - 585 1.2e-126 408.1 118.5 15 18 1.9e-10 1.9e-07 31.2 1.5 4 24 491 511 488 512 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF23-206 - 585 1.2e-126 408.1 118.5 16 18 2.4e-10 2.3e-07 30.9 1.0 1 25 516 540 516 540 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF23-206 - 585 1.2e-126 408.1 118.5 17 18 5.4e-06 0.0054 17.1 0.3 5 24 548 567 544 568 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF23-206 - 585 1.2e-126 408.1 118.5 18 18 5.5 5.5e+03 -1.9 0.0 2 10 573 581 572 584 0.84 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZNF23-206 - 585 2.4e-78 254.4 119.3 1 16 3e-07 0.0003 21.1 0.1 1 23 138 160 138 160 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF23-206 - 585 2.4e-78 254.4 119.3 2 16 2e-07 0.0002 21.6 2.8 1 23 166 188 166 188 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF23-206 - 585 2.4e-78 254.4 119.3 3 16 2.1e-08 2e-05 24.7 0.5 1 23 194 216 194 216 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF23-206 - 585 2.4e-78 254.4 119.3 4 16 0.00014 0.14 12.6 1.5 1 23 222 244 222 244 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF23-206 - 585 2.4e-78 254.4 119.3 5 16 7.1e-08 7.1e-05 23.1 0.1 1 23 250 272 250 272 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF23-206 - 585 2.4e-78 254.4 119.3 6 16 3.2e-06 0.0032 17.9 1.8 1 23 278 300 278 300 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF23-206 - 585 2.4e-78 254.4 119.3 7 16 3.5e-08 3.5e-05 24.0 0.5 1 23 306 328 306 328 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF23-206 - 585 2.4e-78 254.4 119.3 8 16 9.9e-08 9.8e-05 22.6 0.1 1 23 334 356 334 356 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF23-206 - 585 2.4e-78 254.4 119.3 9 16 2.6e-06 0.0026 18.1 2.5 1 23 362 384 362 384 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF23-206 - 585 2.4e-78 254.4 119.3 10 16 2.1e-08 2.1e-05 24.7 0.2 1 23 390 412 390 412 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF23-206 - 585 2.4e-78 254.4 119.3 11 16 4e-07 0.00039 20.7 4.4 1 23 418 440 418 440 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF23-206 - 585 2.4e-78 254.4 119.3 12 16 4.2e-08 4.2e-05 23.8 0.4 1 23 446 468 446 468 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF23-206 - 585 2.4e-78 254.4 119.3 13 16 1.7e-05 0.016 15.6 2.1 1 23 474 496 474 496 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF23-206 - 585 2.4e-78 254.4 119.3 14 16 2.4e-07 0.00024 21.4 2.8 1 23 502 524 502 524 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF23-206 - 585 2.4e-78 254.4 119.3 15 16 2.4e-06 0.0024 18.2 0.3 1 23 530 552 530 552 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF23-206 - 585 2.4e-78 254.4 119.3 16 16 1.5e-06 0.0015 18.8 1.0 1 23 558 580 558 580 0.98 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZNF23-206 - 585 1.3e-48 159.4 117.6 1 17 2.7 2.7e+03 -0.3 0.0 8 21 117 130 110 131 0.77 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF23-206 - 585 1.3e-48 159.4 117.6 2 17 0.0022 2.2 9.3 0.3 1 23 138 160 138 161 0.74 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF23-206 - 585 1.3e-48 159.4 117.6 3 17 0.00018 0.18 12.7 2.4 1 23 166 188 166 189 0.91 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF23-206 - 585 1.3e-48 159.4 117.6 4 17 2.9e-06 0.0029 18.3 0.4 1 23 194 216 194 217 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF23-206 - 585 1.3e-48 159.4 117.6 5 17 3.1e-05 0.031 15.1 1.4 1 23 222 244 222 245 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF23-206 - 585 1.3e-48 159.4 117.6 6 17 0.00017 0.17 12.8 0.1 1 23 250 272 250 273 0.91 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF23-206 - 585 1.3e-48 159.4 117.6 7 17 7.6e-06 0.0076 17.0 1.8 1 23 278 300 278 301 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF23-206 - 585 1.3e-48 159.4 117.6 8 17 4.7e-06 0.0047 17.7 0.3 1 23 306 328 306 329 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF23-206 - 585 1.3e-48 159.4 117.6 9 17 1.1e-05 0.011 16.5 0.2 1 23 334 356 334 357 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF23-206 - 585 1.3e-48 159.4 117.6 10 17 4.1e-06 0.0041 17.8 2.1 1 23 362 384 362 385 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF23-206 - 585 1.3e-48 159.4 117.6 11 17 2.1e-05 0.021 15.6 0.2 1 23 390 412 390 413 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF23-206 - 585 1.3e-48 159.4 117.6 12 17 2.3e-05 0.023 15.5 3.3 1 23 418 440 418 441 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF23-206 - 585 1.3e-48 159.4 117.6 13 17 2.3e-05 0.023 15.5 0.4 1 23 446 468 446 469 0.89 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF23-206 - 585 1.3e-48 159.4 117.6 14 17 0.00036 0.36 11.8 2.2 1 23 474 496 474 497 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF23-206 - 585 1.3e-48 159.4 117.6 15 17 3.5e-05 0.035 14.9 2.6 1 23 502 524 502 525 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF23-206 - 585 1.3e-48 159.4 117.6 16 17 0.0023 2.3 9.3 0.4 1 23 530 552 530 553 0.88 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF23-206 - 585 1.3e-48 159.4 117.6 17 17 0.00013 0.13 13.2 1.4 1 23 558 580 558 581 0.93 C2H2-type zinc finger zf-C2H2_11 PF16622.5 29 ZNF23-206 - 585 3.1e-21 74.8 82.3 1 17 3.3 3.3e+03 -2.0 0.3 2 7 68 73 67 75 0.83 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF23-206 - 585 3.1e-21 74.8 82.3 2 17 0.0017 1.7 8.4 0.0 5 18 138 151 134 159 0.81 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF23-206 - 585 3.1e-21 74.8 82.3 3 17 0.018 18 5.2 0.2 5 15 166 176 163 180 0.85 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF23-206 - 585 3.1e-21 74.8 82.3 4 17 7.2e-08 7.2e-05 22.5 0.4 5 26 194 215 191 216 0.94 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF23-206 - 585 3.1e-21 74.8 82.3 5 17 0.02 19 5.1 0.8 5 16 222 233 219 240 0.87 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF23-206 - 585 3.1e-21 74.8 82.3 6 17 0.2 2e+02 1.9 0.0 6 26 251 271 248 272 0.86 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF23-206 - 585 3.1e-21 74.8 82.3 7 17 0.19 1.9e+02 1.9 1.6 6 26 279 299 276 300 0.86 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF23-206 - 585 3.1e-21 74.8 82.3 8 17 0.0096 9.5 6.1 0.1 5 26 306 327 303 328 0.84 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF23-206 - 585 3.1e-21 74.8 82.3 9 17 0.00062 0.62 9.9 0.1 6 26 335 355 332 356 0.93 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF23-206 - 585 3.1e-21 74.8 82.3 10 17 0.1 1e+02 2.8 0.8 6 26 363 383 360 384 0.90 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF23-206 - 585 3.1e-21 74.8 82.3 11 17 6.2e-05 0.062 13.1 0.1 6 26 391 411 388 412 0.93 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF23-206 - 585 3.1e-21 74.8 82.3 12 17 3.5e-06 0.0035 17.1 0.9 6 26 419 439 416 440 0.85 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF23-206 - 585 3.1e-21 74.8 82.3 13 17 1.9e-06 0.0019 17.9 0.1 5 26 446 467 443 468 0.94 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF23-206 - 585 3.1e-21 74.8 82.3 14 17 0.55 5.4e+02 0.5 0.5 5 15 474 484 471 488 0.84 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF23-206 - 585 3.1e-21 74.8 82.3 15 17 0.0031 3.1 7.6 0.2 5 23 502 520 499 522 0.90 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF23-206 - 585 3.1e-21 74.8 82.3 16 17 0.022 22 4.9 0.1 5 15 530 540 527 544 0.84 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF23-206 - 585 3.1e-21 74.8 82.3 17 17 1.5 1.5e+03 -0.9 0.9 7 23 560 576 558 579 0.85 zinc-finger C2H2-type Zn-ribbon_8 PF09723.10 40 ZNF23-206 - 585 4.1e-17 62.0 85.4 1 13 0.0025 2.5 8.3 3.6 6 34 138 173 136 176 0.77 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF23-206 - 585 4.1e-17 62.0 85.4 2 13 0.0013 1.3 9.2 3.0 6 34 166 201 165 202 0.91 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF23-206 - 585 4.1e-17 62.0 85.4 3 13 4.4e-06 0.0044 17.1 1.2 6 34 194 229 193 232 0.92 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF23-206 - 585 4.1e-17 62.0 85.4 4 13 9.6e-06 0.0096 16.0 2.9 6 34 250 285 249 288 0.91 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF23-206 - 585 4.1e-17 62.0 85.4 5 13 0.00014 0.14 12.3 6.5 6 34 278 313 277 322 0.92 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF23-206 - 585 4.1e-17 62.0 85.4 6 13 4.5e-05 0.044 13.9 4.7 6 34 306 341 305 344 0.92 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF23-206 - 585 4.1e-17 62.0 85.4 7 13 1.6e-05 0.016 15.4 4.0 6 35 334 370 333 372 0.91 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF23-206 - 585 4.1e-17 62.0 85.4 8 13 0.0025 2.5 8.3 7.1 6 34 362 397 360 400 0.84 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF23-206 - 585 4.1e-17 62.0 85.4 9 13 0.0002 0.2 11.8 5.4 6 34 390 425 389 433 0.87 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF23-206 - 585 4.1e-17 62.0 85.4 10 13 0.0059 5.9 7.1 7.4 6 34 418 453 417 456 0.88 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF23-206 - 585 4.1e-17 62.0 85.4 11 13 0.00079 0.79 9.9 3.9 6 34 446 481 445 484 0.89 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF23-206 - 585 4.1e-17 62.0 85.4 12 13 0.0055 5.5 7.2 6.0 6 34 474 509 473 514 0.90 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF23-206 - 585 4.1e-17 62.0 85.4 13 13 0.00029 0.29 11.3 0.5 6 36 530 567 529 571 0.89 Zinc ribbon domain zf-C2H2_6 PF13912.6 27 ZNF23-206 - 585 7.1e-12 45.0 106.4 1 16 0.00053 0.53 10.4 0.3 2 24 138 160 138 163 0.81 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF23-206 - 585 7.1e-12 45.0 106.4 2 16 0.011 11 6.2 2.6 2 13 166 177 166 178 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF23-206 - 585 7.1e-12 45.0 106.4 3 16 0.023 23 5.2 0.2 2 12 194 204 194 205 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF23-206 - 585 7.1e-12 45.0 106.4 4 16 0.032 31 4.7 1.1 2 12 222 232 222 242 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF23-206 - 585 7.1e-12 45.0 106.4 5 16 0.028 28 4.9 0.1 2 12 250 260 250 270 0.95 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF23-206 - 585 7.1e-12 45.0 106.4 6 16 0.003 3 8.0 1.3 2 12 278 288 278 298 0.92 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF23-206 - 585 7.1e-12 45.0 106.4 7 16 0.0014 1.4 9.0 0.5 2 20 306 324 306 330 0.78 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF23-206 - 585 7.1e-12 45.0 106.4 8 16 0.00079 0.79 9.8 0.6 2 12 334 344 334 345 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF23-206 - 585 7.1e-12 45.0 106.4 9 16 0.0013 1.3 9.1 0.5 2 12 362 372 362 372 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF23-206 - 585 7.1e-12 45.0 106.4 10 16 0.0012 1.2 9.2 0.6 2 12 390 400 390 401 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF23-206 - 585 7.1e-12 45.0 106.4 11 16 0.012 12 6.0 1.9 2 17 418 433 418 441 0.81 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF23-206 - 585 7.1e-12 45.0 106.4 12 16 0.0024 2.4 8.3 0.5 2 12 446 456 446 457 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF23-206 - 585 7.1e-12 45.0 106.4 13 16 0.11 1.1e+02 2.9 0.7 2 12 474 484 474 484 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF23-206 - 585 7.1e-12 45.0 106.4 14 16 0.0028 2.8 8.0 2.0 2 24 502 524 502 527 0.79 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF23-206 - 585 7.1e-12 45.0 106.4 15 16 0.08 79 3.4 0.6 2 12 530 540 530 540 0.92 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF23-206 - 585 7.1e-12 45.0 106.4 16 16 0.0074 7.4 6.7 0.1 2 12 558 568 558 568 0.87 C2H2-type zinc finger zf_UBZ PF18439.1 32 ZNF23-206 - 585 1.7e-10 40.3 72.9 1 16 0.00042 0.42 10.3 0.1 3 17 138 152 136 156 0.90 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF23-206 - 585 1.7e-10 40.3 72.9 2 16 0.045 45 3.8 0.2 3 14 166 177 164 185 0.81 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF23-206 - 585 1.7e-10 40.3 72.9 3 16 0.02 20 4.9 0.0 3 20 194 212 192 213 0.82 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF23-206 - 585 1.7e-10 40.3 72.9 4 16 0.024 24 4.6 0.5 3 20 222 240 220 241 0.80 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF23-206 - 585 1.7e-10 40.3 72.9 5 16 0.0066 6.6 6.4 0.1 3 21 250 269 248 269 0.87 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF23-206 - 585 1.7e-10 40.3 72.9 6 16 0.015 15 5.3 1.0 3 21 278 297 276 297 0.90 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF23-206 - 585 1.7e-10 40.3 72.9 7 16 0.0071 7.1 6.3 0.1 3 20 306 324 304 325 0.81 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF23-206 - 585 1.7e-10 40.3 72.9 8 16 0.0023 2.3 7.9 0.1 3 21 334 353 332 353 0.88 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF23-206 - 585 1.7e-10 40.3 72.9 9 16 0.016 16 5.2 0.7 3 20 362 380 360 381 0.87 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF23-206 - 585 1.7e-10 40.3 72.9 10 16 0.0033 3.3 7.4 0.1 3 21 390 409 388 409 0.86 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF23-206 - 585 1.7e-10 40.3 72.9 11 16 0.23 2.3e+02 1.5 0.7 3 14 418 429 416 437 0.79 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF23-206 - 585 1.7e-10 40.3 72.9 12 16 0.00068 0.67 9.6 0.1 3 20 446 464 444 465 0.83 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF23-206 - 585 1.7e-10 40.3 72.9 13 16 0.47 4.7e+02 0.5 0.7 3 15 474 486 472 492 0.87 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF23-206 - 585 1.7e-10 40.3 72.9 14 16 0.0087 8.7 6.0 0.2 3 15 502 514 500 521 0.83 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF23-206 - 585 1.7e-10 40.3 72.9 15 16 0.21 2.1e+02 1.6 0.1 3 15 530 542 528 549 0.81 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF23-206 - 585 1.7e-10 40.3 72.9 16 16 0.062 62 3.3 0.0 3 21 558 577 556 577 0.89 Ubiquitin-Binding Zinc Finger C1_4 PF07975.12 55 ZNF23-206 - 585 4.1e-08 33.3 80.4 1 14 6.8e-05 0.068 13.4 0.2 5 49 121 161 117 163 0.82 TFIIH C1-like domain C1_4 PF07975.12 55 ZNF23-206 - 585 4.1e-08 33.3 80.4 2 14 0.00065 0.65 10.3 1.8 1 49 167 217 167 219 0.87 TFIIH C1-like domain C1_4 PF07975.12 55 ZNF23-206 - 585 4.1e-08 33.3 80.4 3 14 0.16 1.6e+02 2.7 1.2 22 48 218 244 210 247 0.73 TFIIH C1-like domain C1_4 PF07975.12 55 ZNF23-206 - 585 4.1e-08 33.3 80.4 4 14 0.019 19 5.6 4.3 5 49 227 273 223 275 0.72 TFIIH C1-like domain C1_4 PF07975.12 55 ZNF23-206 - 585 4.1e-08 33.3 80.4 5 14 0.025 25 5.2 4.2 1 49 251 301 251 304 0.81 TFIIH C1-like domain C1_4 PF07975.12 55 ZNF23-206 - 585 4.1e-08 33.3 80.4 6 14 0.097 96 3.3 3.7 2 48 280 328 279 331 0.71 TFIIH C1-like domain C1_4 PF07975.12 55 ZNF23-206 - 585 4.1e-08 33.3 80.4 7 14 0.00085 0.84 9.9 1.2 2 49 308 357 307 359 0.84 TFIIH C1-like domain C1_4 PF07975.12 55 ZNF23-206 - 585 4.1e-08 33.3 80.4 8 14 0.13 1.3e+02 2.9 5.2 1 35 335 371 335 384 0.80 TFIIH C1-like domain C1_4 PF07975.12 55 ZNF23-206 - 585 4.1e-08 33.3 80.4 9 14 0.0022 2.1 8.6 3.1 2 49 364 413 363 416 0.75 TFIIH C1-like domain C1_4 PF07975.12 55 ZNF23-206 - 585 4.1e-08 33.3 80.4 10 14 0.0028 2.8 8.2 3.3 2 49 420 469 419 471 0.78 TFIIH C1-like domain C1_4 PF07975.12 55 ZNF23-206 - 585 4.1e-08 33.3 80.4 11 14 0.0086 8.5 6.7 5.1 1 49 447 497 447 500 0.86 TFIIH C1-like domain C1_4 PF07975.12 55 ZNF23-206 - 585 4.1e-08 33.3 80.4 12 14 0.025 25 5.2 6.5 1 48 475 524 475 527 0.85 TFIIH C1-like domain C1_4 PF07975.12 55 ZNF23-206 - 585 4.1e-08 33.3 80.4 13 14 0.001 1 9.6 3.6 2 49 504 553 503 556 0.83 TFIIH C1-like domain C1_4 PF07975.12 55 ZNF23-206 - 585 4.1e-08 33.3 80.4 14 14 1.2 1.2e+03 -0.2 0.1 25 48 557 580 553 581 0.77 TFIIH C1-like domain zinc_ribbon_15 PF17032.5 86 ZNF23-206 - 585 7.6e-07 29.8 71.8 1 9 0.0038 3.8 8.3 2.4 32 81 132 181 120 184 0.85 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF23-206 - 585 7.6e-07 29.8 71.8 2 9 0.00066 0.66 10.8 2.6 30 81 186 237 178 240 0.85 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF23-206 - 585 7.6e-07 29.8 71.8 3 9 0.097 97 3.8 10.0 26 75 266 315 233 321 0.57 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF23-206 - 585 7.6e-07 29.8 71.8 4 9 0.00072 0.72 10.6 1.8 33 75 301 343 293 349 0.86 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF23-206 - 585 7.6e-07 29.8 71.8 5 9 0.001 1 10.1 3.3 30 81 326 377 321 380 0.86 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF23-206 - 585 7.6e-07 29.8 71.8 6 9 0.0036 3.6 8.4 1.9 30 77 382 429 377 433 0.82 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF23-206 - 585 7.6e-07 29.8 71.8 7 9 0.0019 1.9 9.3 3.9 31 81 439 489 433 492 0.87 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF23-206 - 585 7.6e-07 29.8 71.8 8 9 0.0014 1.4 9.8 1.8 29 81 493 545 484 549 0.87 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF23-206 - 585 7.6e-07 29.8 71.8 9 9 0.84 8.4e+02 0.8 0.1 31 55 554 575 545 583 0.65 zinc-ribbon family # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF23-206.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF23-206.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF23-206.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF23-206.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF23-206.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:02:06 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZNF23-207 - 585 1.2e-126 408.1 118.5 1 18 0.36 3.6e+02 1.8 0.1 2 18 97 113 96 115 0.80 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF23-207 - 585 1.2e-126 408.1 118.5 2 18 2.4e-06 0.0024 18.2 0.1 10 25 133 148 125 148 0.83 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF23-207 - 585 1.2e-126 408.1 118.5 3 18 1.7e-09 1.7e-06 28.2 0.4 2 25 153 176 152 177 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF23-207 - 585 1.2e-126 408.1 118.5 4 18 6.6e-08 6.6e-05 23.2 1.5 4 25 183 204 180 204 0.90 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF23-207 - 585 1.2e-126 408.1 118.5 5 18 1.6e-11 1.6e-08 34.6 1.0 1 25 208 232 208 233 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF23-207 - 585 1.2e-126 408.1 118.5 6 18 7.8e-11 7.8e-08 32.4 0.3 4 25 239 260 236 260 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF23-207 - 585 1.2e-126 408.1 118.5 7 18 2.5e-10 2.5e-07 30.8 1.3 2 25 265 288 264 289 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF23-207 - 585 1.2e-126 408.1 118.5 8 18 1.7e-11 1.7e-08 34.5 0.3 2 26 293 317 292 317 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF23-207 - 585 1.2e-126 408.1 118.5 9 18 2.3e-11 2.3e-08 34.1 0.3 2 25 321 344 320 344 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF23-207 - 585 1.2e-126 408.1 118.5 10 18 7.1e-11 7.1e-08 32.5 1.3 2 25 349 372 348 373 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF23-207 - 585 1.2e-126 408.1 118.5 11 18 9.7e-12 9.7e-09 35.3 0.5 2 25 377 400 376 400 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF23-207 - 585 1.2e-126 408.1 118.5 12 18 6.1e-11 6.1e-08 32.8 1.8 2 26 405 429 404 429 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF23-207 - 585 1.2e-126 408.1 118.5 13 18 1.2e-10 1.2e-07 31.9 1.0 1 25 432 456 432 456 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF23-207 - 585 1.2e-126 408.1 118.5 14 18 1.3e-11 1.3e-08 34.9 3.2 2 25 461 484 460 485 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF23-207 - 585 1.2e-126 408.1 118.5 15 18 1.9e-10 1.9e-07 31.2 1.5 4 24 491 511 488 512 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF23-207 - 585 1.2e-126 408.1 118.5 16 18 2.4e-10 2.3e-07 30.9 1.0 1 25 516 540 516 540 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF23-207 - 585 1.2e-126 408.1 118.5 17 18 5.4e-06 0.0054 17.1 0.3 5 24 548 567 544 568 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF23-207 - 585 1.2e-126 408.1 118.5 18 18 5.5 5.5e+03 -1.9 0.0 2 10 573 581 572 584 0.84 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZNF23-207 - 585 2.4e-78 254.4 119.3 1 16 3e-07 0.0003 21.1 0.1 1 23 138 160 138 160 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF23-207 - 585 2.4e-78 254.4 119.3 2 16 2e-07 0.0002 21.6 2.8 1 23 166 188 166 188 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF23-207 - 585 2.4e-78 254.4 119.3 3 16 2.1e-08 2e-05 24.7 0.5 1 23 194 216 194 216 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF23-207 - 585 2.4e-78 254.4 119.3 4 16 0.00014 0.14 12.6 1.5 1 23 222 244 222 244 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF23-207 - 585 2.4e-78 254.4 119.3 5 16 7.1e-08 7.1e-05 23.1 0.1 1 23 250 272 250 272 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF23-207 - 585 2.4e-78 254.4 119.3 6 16 3.2e-06 0.0032 17.9 1.8 1 23 278 300 278 300 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF23-207 - 585 2.4e-78 254.4 119.3 7 16 3.5e-08 3.5e-05 24.0 0.5 1 23 306 328 306 328 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF23-207 - 585 2.4e-78 254.4 119.3 8 16 9.9e-08 9.8e-05 22.6 0.1 1 23 334 356 334 356 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF23-207 - 585 2.4e-78 254.4 119.3 9 16 2.6e-06 0.0026 18.1 2.5 1 23 362 384 362 384 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF23-207 - 585 2.4e-78 254.4 119.3 10 16 2.1e-08 2.1e-05 24.7 0.2 1 23 390 412 390 412 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF23-207 - 585 2.4e-78 254.4 119.3 11 16 4e-07 0.00039 20.7 4.4 1 23 418 440 418 440 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF23-207 - 585 2.4e-78 254.4 119.3 12 16 4.2e-08 4.2e-05 23.8 0.4 1 23 446 468 446 468 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF23-207 - 585 2.4e-78 254.4 119.3 13 16 1.7e-05 0.016 15.6 2.1 1 23 474 496 474 496 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF23-207 - 585 2.4e-78 254.4 119.3 14 16 2.4e-07 0.00024 21.4 2.8 1 23 502 524 502 524 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF23-207 - 585 2.4e-78 254.4 119.3 15 16 2.4e-06 0.0024 18.2 0.3 1 23 530 552 530 552 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF23-207 - 585 2.4e-78 254.4 119.3 16 16 1.5e-06 0.0015 18.8 1.0 1 23 558 580 558 580 0.98 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZNF23-207 - 585 1.3e-48 159.4 117.6 1 17 2.7 2.7e+03 -0.3 0.0 8 21 117 130 110 131 0.77 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF23-207 - 585 1.3e-48 159.4 117.6 2 17 0.0022 2.2 9.3 0.3 1 23 138 160 138 161 0.74 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF23-207 - 585 1.3e-48 159.4 117.6 3 17 0.00018 0.18 12.7 2.4 1 23 166 188 166 189 0.91 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF23-207 - 585 1.3e-48 159.4 117.6 4 17 2.9e-06 0.0029 18.3 0.4 1 23 194 216 194 217 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF23-207 - 585 1.3e-48 159.4 117.6 5 17 3.1e-05 0.031 15.1 1.4 1 23 222 244 222 245 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF23-207 - 585 1.3e-48 159.4 117.6 6 17 0.00017 0.17 12.8 0.1 1 23 250 272 250 273 0.91 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF23-207 - 585 1.3e-48 159.4 117.6 7 17 7.6e-06 0.0076 17.0 1.8 1 23 278 300 278 301 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF23-207 - 585 1.3e-48 159.4 117.6 8 17 4.7e-06 0.0047 17.7 0.3 1 23 306 328 306 329 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF23-207 - 585 1.3e-48 159.4 117.6 9 17 1.1e-05 0.011 16.5 0.2 1 23 334 356 334 357 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF23-207 - 585 1.3e-48 159.4 117.6 10 17 4.1e-06 0.0041 17.8 2.1 1 23 362 384 362 385 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF23-207 - 585 1.3e-48 159.4 117.6 11 17 2.1e-05 0.021 15.6 0.2 1 23 390 412 390 413 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF23-207 - 585 1.3e-48 159.4 117.6 12 17 2.3e-05 0.023 15.5 3.3 1 23 418 440 418 441 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF23-207 - 585 1.3e-48 159.4 117.6 13 17 2.3e-05 0.023 15.5 0.4 1 23 446 468 446 469 0.89 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF23-207 - 585 1.3e-48 159.4 117.6 14 17 0.00036 0.36 11.8 2.2 1 23 474 496 474 497 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF23-207 - 585 1.3e-48 159.4 117.6 15 17 3.5e-05 0.035 14.9 2.6 1 23 502 524 502 525 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF23-207 - 585 1.3e-48 159.4 117.6 16 17 0.0023 2.3 9.3 0.4 1 23 530 552 530 553 0.88 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF23-207 - 585 1.3e-48 159.4 117.6 17 17 0.00013 0.13 13.2 1.4 1 23 558 580 558 581 0.93 C2H2-type zinc finger zf-C2H2_11 PF16622.5 29 ZNF23-207 - 585 3.1e-21 74.8 82.3 1 17 3.3 3.3e+03 -2.0 0.3 2 7 68 73 67 75 0.83 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF23-207 - 585 3.1e-21 74.8 82.3 2 17 0.0017 1.7 8.4 0.0 5 18 138 151 134 159 0.81 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF23-207 - 585 3.1e-21 74.8 82.3 3 17 0.018 18 5.2 0.2 5 15 166 176 163 180 0.85 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF23-207 - 585 3.1e-21 74.8 82.3 4 17 7.2e-08 7.2e-05 22.5 0.4 5 26 194 215 191 216 0.94 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF23-207 - 585 3.1e-21 74.8 82.3 5 17 0.02 19 5.1 0.8 5 16 222 233 219 240 0.87 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF23-207 - 585 3.1e-21 74.8 82.3 6 17 0.2 2e+02 1.9 0.0 6 26 251 271 248 272 0.86 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF23-207 - 585 3.1e-21 74.8 82.3 7 17 0.19 1.9e+02 1.9 1.6 6 26 279 299 276 300 0.86 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF23-207 - 585 3.1e-21 74.8 82.3 8 17 0.0096 9.5 6.1 0.1 5 26 306 327 303 328 0.84 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF23-207 - 585 3.1e-21 74.8 82.3 9 17 0.00062 0.62 9.9 0.1 6 26 335 355 332 356 0.93 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF23-207 - 585 3.1e-21 74.8 82.3 10 17 0.1 1e+02 2.8 0.8 6 26 363 383 360 384 0.90 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF23-207 - 585 3.1e-21 74.8 82.3 11 17 6.2e-05 0.062 13.1 0.1 6 26 391 411 388 412 0.93 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF23-207 - 585 3.1e-21 74.8 82.3 12 17 3.5e-06 0.0035 17.1 0.9 6 26 419 439 416 440 0.85 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF23-207 - 585 3.1e-21 74.8 82.3 13 17 1.9e-06 0.0019 17.9 0.1 5 26 446 467 443 468 0.94 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF23-207 - 585 3.1e-21 74.8 82.3 14 17 0.55 5.4e+02 0.5 0.5 5 15 474 484 471 488 0.84 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF23-207 - 585 3.1e-21 74.8 82.3 15 17 0.0031 3.1 7.6 0.2 5 23 502 520 499 522 0.90 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF23-207 - 585 3.1e-21 74.8 82.3 16 17 0.022 22 4.9 0.1 5 15 530 540 527 544 0.84 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF23-207 - 585 3.1e-21 74.8 82.3 17 17 1.5 1.5e+03 -0.9 0.9 7 23 560 576 558 579 0.85 zinc-finger C2H2-type Zn-ribbon_8 PF09723.10 40 ZNF23-207 - 585 4.1e-17 62.0 85.4 1 13 0.0025 2.5 8.3 3.6 6 34 138 173 136 176 0.77 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF23-207 - 585 4.1e-17 62.0 85.4 2 13 0.0013 1.3 9.2 3.0 6 34 166 201 165 202 0.91 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF23-207 - 585 4.1e-17 62.0 85.4 3 13 4.4e-06 0.0044 17.1 1.2 6 34 194 229 193 232 0.92 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF23-207 - 585 4.1e-17 62.0 85.4 4 13 9.6e-06 0.0096 16.0 2.9 6 34 250 285 249 288 0.91 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF23-207 - 585 4.1e-17 62.0 85.4 5 13 0.00014 0.14 12.3 6.5 6 34 278 313 277 322 0.92 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF23-207 - 585 4.1e-17 62.0 85.4 6 13 4.5e-05 0.044 13.9 4.7 6 34 306 341 305 344 0.92 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF23-207 - 585 4.1e-17 62.0 85.4 7 13 1.6e-05 0.016 15.4 4.0 6 35 334 370 333 372 0.91 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF23-207 - 585 4.1e-17 62.0 85.4 8 13 0.0025 2.5 8.3 7.1 6 34 362 397 360 400 0.84 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF23-207 - 585 4.1e-17 62.0 85.4 9 13 0.0002 0.2 11.8 5.4 6 34 390 425 389 433 0.87 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF23-207 - 585 4.1e-17 62.0 85.4 10 13 0.0059 5.9 7.1 7.4 6 34 418 453 417 456 0.88 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF23-207 - 585 4.1e-17 62.0 85.4 11 13 0.00079 0.79 9.9 3.9 6 34 446 481 445 484 0.89 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF23-207 - 585 4.1e-17 62.0 85.4 12 13 0.0055 5.5 7.2 6.0 6 34 474 509 473 514 0.90 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF23-207 - 585 4.1e-17 62.0 85.4 13 13 0.00029 0.29 11.3 0.5 6 36 530 567 529 571 0.89 Zinc ribbon domain zf-C2H2_6 PF13912.6 27 ZNF23-207 - 585 7.1e-12 45.0 106.4 1 16 0.00053 0.53 10.4 0.3 2 24 138 160 138 163 0.81 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF23-207 - 585 7.1e-12 45.0 106.4 2 16 0.011 11 6.2 2.6 2 13 166 177 166 178 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF23-207 - 585 7.1e-12 45.0 106.4 3 16 0.023 23 5.2 0.2 2 12 194 204 194 205 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF23-207 - 585 7.1e-12 45.0 106.4 4 16 0.032 31 4.7 1.1 2 12 222 232 222 242 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF23-207 - 585 7.1e-12 45.0 106.4 5 16 0.028 28 4.9 0.1 2 12 250 260 250 270 0.95 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF23-207 - 585 7.1e-12 45.0 106.4 6 16 0.003 3 8.0 1.3 2 12 278 288 278 298 0.92 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF23-207 - 585 7.1e-12 45.0 106.4 7 16 0.0014 1.4 9.0 0.5 2 20 306 324 306 330 0.78 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF23-207 - 585 7.1e-12 45.0 106.4 8 16 0.00079 0.79 9.8 0.6 2 12 334 344 334 345 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF23-207 - 585 7.1e-12 45.0 106.4 9 16 0.0013 1.3 9.1 0.5 2 12 362 372 362 372 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF23-207 - 585 7.1e-12 45.0 106.4 10 16 0.0012 1.2 9.2 0.6 2 12 390 400 390 401 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF23-207 - 585 7.1e-12 45.0 106.4 11 16 0.012 12 6.0 1.9 2 17 418 433 418 441 0.81 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF23-207 - 585 7.1e-12 45.0 106.4 12 16 0.0024 2.4 8.3 0.5 2 12 446 456 446 457 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF23-207 - 585 7.1e-12 45.0 106.4 13 16 0.11 1.1e+02 2.9 0.7 2 12 474 484 474 484 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF23-207 - 585 7.1e-12 45.0 106.4 14 16 0.0028 2.8 8.0 2.0 2 24 502 524 502 527 0.79 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF23-207 - 585 7.1e-12 45.0 106.4 15 16 0.08 79 3.4 0.6 2 12 530 540 530 540 0.92 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF23-207 - 585 7.1e-12 45.0 106.4 16 16 0.0074 7.4 6.7 0.1 2 12 558 568 558 568 0.87 C2H2-type zinc finger zf_UBZ PF18439.1 32 ZNF23-207 - 585 1.7e-10 40.3 72.9 1 16 0.00042 0.42 10.3 0.1 3 17 138 152 136 156 0.90 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF23-207 - 585 1.7e-10 40.3 72.9 2 16 0.045 45 3.8 0.2 3 14 166 177 164 185 0.81 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF23-207 - 585 1.7e-10 40.3 72.9 3 16 0.02 20 4.9 0.0 3 20 194 212 192 213 0.82 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF23-207 - 585 1.7e-10 40.3 72.9 4 16 0.024 24 4.6 0.5 3 20 222 240 220 241 0.80 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF23-207 - 585 1.7e-10 40.3 72.9 5 16 0.0066 6.6 6.4 0.1 3 21 250 269 248 269 0.87 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF23-207 - 585 1.7e-10 40.3 72.9 6 16 0.015 15 5.3 1.0 3 21 278 297 276 297 0.90 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF23-207 - 585 1.7e-10 40.3 72.9 7 16 0.0071 7.1 6.3 0.1 3 20 306 324 304 325 0.81 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF23-207 - 585 1.7e-10 40.3 72.9 8 16 0.0023 2.3 7.9 0.1 3 21 334 353 332 353 0.88 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF23-207 - 585 1.7e-10 40.3 72.9 9 16 0.016 16 5.2 0.7 3 20 362 380 360 381 0.87 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF23-207 - 585 1.7e-10 40.3 72.9 10 16 0.0033 3.3 7.4 0.1 3 21 390 409 388 409 0.86 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF23-207 - 585 1.7e-10 40.3 72.9 11 16 0.23 2.3e+02 1.5 0.7 3 14 418 429 416 437 0.79 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF23-207 - 585 1.7e-10 40.3 72.9 12 16 0.00068 0.67 9.6 0.1 3 20 446 464 444 465 0.83 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF23-207 - 585 1.7e-10 40.3 72.9 13 16 0.47 4.7e+02 0.5 0.7 3 15 474 486 472 492 0.87 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF23-207 - 585 1.7e-10 40.3 72.9 14 16 0.0087 8.7 6.0 0.2 3 15 502 514 500 521 0.83 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF23-207 - 585 1.7e-10 40.3 72.9 15 16 0.21 2.1e+02 1.6 0.1 3 15 530 542 528 549 0.81 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF23-207 - 585 1.7e-10 40.3 72.9 16 16 0.062 62 3.3 0.0 3 21 558 577 556 577 0.89 Ubiquitin-Binding Zinc Finger C1_4 PF07975.12 55 ZNF23-207 - 585 4.1e-08 33.3 80.4 1 14 6.8e-05 0.068 13.4 0.2 5 49 121 161 117 163 0.82 TFIIH C1-like domain C1_4 PF07975.12 55 ZNF23-207 - 585 4.1e-08 33.3 80.4 2 14 0.00065 0.65 10.3 1.8 1 49 167 217 167 219 0.87 TFIIH C1-like domain C1_4 PF07975.12 55 ZNF23-207 - 585 4.1e-08 33.3 80.4 3 14 0.16 1.6e+02 2.7 1.2 22 48 218 244 210 247 0.73 TFIIH C1-like domain C1_4 PF07975.12 55 ZNF23-207 - 585 4.1e-08 33.3 80.4 4 14 0.019 19 5.6 4.3 5 49 227 273 223 275 0.72 TFIIH C1-like domain C1_4 PF07975.12 55 ZNF23-207 - 585 4.1e-08 33.3 80.4 5 14 0.025 25 5.2 4.2 1 49 251 301 251 304 0.81 TFIIH C1-like domain C1_4 PF07975.12 55 ZNF23-207 - 585 4.1e-08 33.3 80.4 6 14 0.097 96 3.3 3.7 2 48 280 328 279 331 0.71 TFIIH C1-like domain C1_4 PF07975.12 55 ZNF23-207 - 585 4.1e-08 33.3 80.4 7 14 0.00085 0.84 9.9 1.2 2 49 308 357 307 359 0.84 TFIIH C1-like domain C1_4 PF07975.12 55 ZNF23-207 - 585 4.1e-08 33.3 80.4 8 14 0.13 1.3e+02 2.9 5.2 1 35 335 371 335 384 0.80 TFIIH C1-like domain C1_4 PF07975.12 55 ZNF23-207 - 585 4.1e-08 33.3 80.4 9 14 0.0022 2.1 8.6 3.1 2 49 364 413 363 416 0.75 TFIIH C1-like domain C1_4 PF07975.12 55 ZNF23-207 - 585 4.1e-08 33.3 80.4 10 14 0.0028 2.8 8.2 3.3 2 49 420 469 419 471 0.78 TFIIH C1-like domain C1_4 PF07975.12 55 ZNF23-207 - 585 4.1e-08 33.3 80.4 11 14 0.0086 8.5 6.7 5.1 1 49 447 497 447 500 0.86 TFIIH C1-like domain C1_4 PF07975.12 55 ZNF23-207 - 585 4.1e-08 33.3 80.4 12 14 0.025 25 5.2 6.5 1 48 475 524 475 527 0.85 TFIIH C1-like domain C1_4 PF07975.12 55 ZNF23-207 - 585 4.1e-08 33.3 80.4 13 14 0.001 1 9.6 3.6 2 49 504 553 503 556 0.83 TFIIH C1-like domain C1_4 PF07975.12 55 ZNF23-207 - 585 4.1e-08 33.3 80.4 14 14 1.2 1.2e+03 -0.2 0.1 25 48 557 580 553 581 0.77 TFIIH C1-like domain zinc_ribbon_15 PF17032.5 86 ZNF23-207 - 585 7.6e-07 29.8 71.8 1 9 0.0038 3.8 8.3 2.4 32 81 132 181 120 184 0.85 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF23-207 - 585 7.6e-07 29.8 71.8 2 9 0.00066 0.66 10.8 2.6 30 81 186 237 178 240 0.85 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF23-207 - 585 7.6e-07 29.8 71.8 3 9 0.097 97 3.8 10.0 26 75 266 315 233 321 0.57 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF23-207 - 585 7.6e-07 29.8 71.8 4 9 0.00072 0.72 10.6 1.8 33 75 301 343 293 349 0.86 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF23-207 - 585 7.6e-07 29.8 71.8 5 9 0.001 1 10.1 3.3 30 81 326 377 321 380 0.86 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF23-207 - 585 7.6e-07 29.8 71.8 6 9 0.0036 3.6 8.4 1.9 30 77 382 429 377 433 0.82 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF23-207 - 585 7.6e-07 29.8 71.8 7 9 0.0019 1.9 9.3 3.9 31 81 439 489 433 492 0.87 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF23-207 - 585 7.6e-07 29.8 71.8 8 9 0.0014 1.4 9.8 1.8 29 81 493 545 484 549 0.87 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF23-207 - 585 7.6e-07 29.8 71.8 9 9 0.84 8.4e+02 0.8 0.1 31 55 554 575 545 583 0.65 zinc-ribbon family # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF23-207.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF23-207.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF23-207.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF23-207.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF23-207.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:02:07 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF23-208.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF23-208.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF23-208.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF23-208.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF23-208.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:02:07 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF23-209.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF23-209.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF23-209.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF23-209.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF23-209.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:02:08 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF23-210.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF23-210.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF23-210.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF23-210.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF23-210.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:02:08 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZNF23-211 - 623 4.2e-126 406.3 118.5 1 18 0.39 3.9e+02 1.7 0.1 2 18 135 151 134 153 0.80 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF23-211 - 623 4.2e-126 406.3 118.5 2 18 2.6e-06 0.0026 18.1 0.1 10 25 171 186 163 186 0.83 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF23-211 - 623 4.2e-126 406.3 118.5 3 18 1.9e-09 1.9e-06 28.1 0.4 2 25 191 214 190 215 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF23-211 - 623 4.2e-126 406.3 118.5 4 18 7.1e-08 7.1e-05 23.1 1.5 4 25 221 242 218 242 0.90 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF23-211 - 623 4.2e-126 406.3 118.5 5 18 1.7e-11 1.7e-08 34.5 1.0 1 25 246 270 246 271 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF23-211 - 623 4.2e-126 406.3 118.5 6 18 8.4e-11 8.4e-08 32.3 0.3 4 25 277 298 274 298 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF23-211 - 623 4.2e-126 406.3 118.5 7 18 2.7e-10 2.7e-07 30.7 1.3 2 25 303 326 302 327 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF23-211 - 623 4.2e-126 406.3 118.5 8 18 1.8e-11 1.8e-08 34.4 0.3 2 26 331 355 330 355 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF23-211 - 623 4.2e-126 406.3 118.5 9 18 2.5e-11 2.5e-08 34.0 0.3 2 25 359 382 358 382 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF23-211 - 623 4.2e-126 406.3 118.5 10 18 7.7e-11 7.7e-08 32.4 1.3 2 25 387 410 386 411 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF23-211 - 623 4.2e-126 406.3 118.5 11 18 1e-11 1e-08 35.2 0.5 2 25 415 438 414 438 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF23-211 - 623 4.2e-126 406.3 118.5 12 18 6.6e-11 6.6e-08 32.6 1.8 2 26 443 467 442 467 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF23-211 - 623 4.2e-126 406.3 118.5 13 18 1.3e-10 1.2e-07 31.8 1.0 1 25 470 494 470 494 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF23-211 - 623 4.2e-126 406.3 118.5 14 18 1.4e-11 1.4e-08 34.8 3.2 2 25 499 522 498 523 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF23-211 - 623 4.2e-126 406.3 118.5 15 18 2.1e-10 2.1e-07 31.1 1.5 4 24 529 549 526 550 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF23-211 - 623 4.2e-126 406.3 118.5 16 18 2.5e-10 2.5e-07 30.8 1.0 1 25 554 578 554 578 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF23-211 - 623 4.2e-126 406.3 118.5 17 18 5.8e-06 0.0058 17.0 0.3 5 24 586 605 582 606 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF23-211 - 623 4.2e-126 406.3 118.5 18 18 5.9 5.9e+03 -2.0 0.0 2 10 611 619 610 622 0.84 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZNF23-211 - 623 8.1e-78 252.8 119.3 1 16 3.2e-07 0.00032 21.0 0.1 1 23 176 198 176 198 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF23-211 - 623 8.1e-78 252.8 119.3 2 16 2.2e-07 0.00022 21.5 2.8 1 23 204 226 204 226 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF23-211 - 623 8.1e-78 252.8 119.3 3 16 2.2e-08 2.2e-05 24.6 0.5 1 23 232 254 232 254 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF23-211 - 623 8.1e-78 252.8 119.3 4 16 0.00016 0.15 12.5 1.5 1 23 260 282 260 282 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF23-211 - 623 8.1e-78 252.8 119.3 5 16 7.6e-08 7.6e-05 23.0 0.1 1 23 288 310 288 310 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF23-211 - 623 8.1e-78 252.8 119.3 6 16 3.4e-06 0.0034 17.8 1.8 1 23 316 338 316 338 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF23-211 - 623 8.1e-78 252.8 119.3 7 16 3.8e-08 3.8e-05 23.9 0.5 1 23 344 366 344 366 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF23-211 - 623 8.1e-78 252.8 119.3 8 16 1.1e-07 0.00011 22.5 0.1 1 23 372 394 372 394 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF23-211 - 623 8.1e-78 252.8 119.3 9 16 2.8e-06 0.0028 18.0 2.5 1 23 400 422 400 422 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF23-211 - 623 8.1e-78 252.8 119.3 10 16 2.3e-08 2.3e-05 24.6 0.2 1 23 428 450 428 450 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF23-211 - 623 8.1e-78 252.8 119.3 11 16 4.3e-07 0.00042 20.6 4.4 1 23 456 478 456 478 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF23-211 - 623 8.1e-78 252.8 119.3 12 16 4.6e-08 4.5e-05 23.7 0.4 1 23 484 506 484 506 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF23-211 - 623 8.1e-78 252.8 119.3 13 16 1.8e-05 0.018 15.5 2.1 1 23 512 534 512 534 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF23-211 - 623 8.1e-78 252.8 119.3 14 16 2.5e-07 0.00025 21.3 2.8 1 23 540 562 540 562 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF23-211 - 623 8.1e-78 252.8 119.3 15 16 2.6e-06 0.0026 18.1 0.3 1 23 568 590 568 590 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF23-211 - 623 8.1e-78 252.8 119.3 16 16 1.7e-06 0.0017 18.7 1.0 1 23 596 618 596 618 0.98 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZNF23-211 - 623 4.6e-48 157.7 117.6 1 17 2.9 2.9e+03 -0.4 0.0 8 21 155 168 148 169 0.77 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF23-211 - 623 4.6e-48 157.7 117.6 2 17 0.0024 2.4 9.2 0.3 1 23 176 198 176 199 0.74 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF23-211 - 623 4.6e-48 157.7 117.6 3 17 0.00019 0.19 12.6 2.4 1 23 204 226 204 227 0.91 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF23-211 - 623 4.6e-48 157.7 117.6 4 17 3.1e-06 0.0031 18.2 0.4 1 23 232 254 232 255 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF23-211 - 623 4.6e-48 157.7 117.6 5 17 3.4e-05 0.034 15.0 1.4 1 23 260 282 260 283 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF23-211 - 623 4.6e-48 157.7 117.6 6 17 0.00018 0.18 12.7 0.1 1 23 288 310 288 311 0.91 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF23-211 - 623 4.6e-48 157.7 117.6 7 17 8.2e-06 0.0082 16.9 1.8 1 23 316 338 316 339 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF23-211 - 623 4.6e-48 157.7 117.6 8 17 5.1e-06 0.0051 17.5 0.3 1 23 344 366 344 367 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF23-211 - 623 4.6e-48 157.7 117.6 9 17 1.2e-05 0.012 16.4 0.2 1 23 372 394 372 395 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF23-211 - 623 4.6e-48 157.7 117.6 10 17 4.4e-06 0.0044 17.7 2.1 1 23 400 422 400 423 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF23-211 - 623 4.6e-48 157.7 117.6 11 17 2.3e-05 0.023 15.5 0.2 1 23 428 450 428 451 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF23-211 - 623 4.6e-48 157.7 117.6 12 17 2.5e-05 0.025 15.4 3.3 1 23 456 478 456 479 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF23-211 - 623 4.6e-48 157.7 117.6 13 17 2.5e-05 0.025 15.4 0.4 1 23 484 506 484 507 0.89 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF23-211 - 623 4.6e-48 157.7 117.6 14 17 0.00039 0.39 11.7 2.2 1 23 512 534 512 535 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF23-211 - 623 4.6e-48 157.7 117.6 15 17 3.8e-05 0.038 14.8 2.6 1 23 540 562 540 563 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF23-211 - 623 4.6e-48 157.7 117.6 16 17 0.0025 2.5 9.2 0.4 1 23 568 590 568 591 0.88 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF23-211 - 623 4.6e-48 157.7 117.6 17 17 0.00014 0.14 13.1 1.4 1 23 596 618 596 619 0.93 C2H2-type zinc finger zf-C2H2_11 PF16622.5 29 ZNF23-211 - 623 9.5e-21 73.2 82.3 1 17 3.6 3.5e+03 -2.1 0.3 2 7 106 111 105 113 0.83 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF23-211 - 623 9.5e-21 73.2 82.3 2 17 0.0019 1.9 8.3 0.0 5 18 176 189 172 197 0.81 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF23-211 - 623 9.5e-21 73.2 82.3 3 17 0.019 19 5.1 0.2 5 15 204 214 201 218 0.85 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF23-211 - 623 9.5e-21 73.2 82.3 4 17 7.8e-08 7.7e-05 22.4 0.4 5 26 232 253 229 254 0.94 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF23-211 - 623 9.5e-21 73.2 82.3 5 17 0.021 21 5.0 0.8 5 16 260 271 257 278 0.87 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF23-211 - 623 9.5e-21 73.2 82.3 6 17 0.21 2.1e+02 1.8 0.0 6 26 289 309 286 310 0.86 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF23-211 - 623 9.5e-21 73.2 82.3 7 17 0.21 2.1e+02 1.8 1.6 6 26 317 337 314 338 0.86 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF23-211 - 623 9.5e-21 73.2 82.3 8 17 0.01 10 6.0 0.1 5 26 344 365 341 366 0.84 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF23-211 - 623 9.5e-21 73.2 82.3 9 17 0.00067 0.66 9.8 0.1 6 26 373 393 370 394 0.93 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF23-211 - 623 9.5e-21 73.2 82.3 10 17 0.11 1.1e+02 2.7 0.8 6 26 401 421 398 422 0.90 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF23-211 - 623 9.5e-21 73.2 82.3 11 17 6.7e-05 0.067 13.0 0.1 6 26 429 449 426 450 0.93 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF23-211 - 623 9.5e-21 73.2 82.3 12 17 3.8e-06 0.0038 17.0 0.9 6 26 457 477 454 478 0.85 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF23-211 - 623 9.5e-21 73.2 82.3 13 17 2e-06 0.002 17.8 0.1 5 26 484 505 481 506 0.94 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF23-211 - 623 9.5e-21 73.2 82.3 14 17 0.59 5.8e+02 0.4 0.5 5 15 512 522 509 526 0.84 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF23-211 - 623 9.5e-21 73.2 82.3 15 17 0.0033 3.3 7.5 0.2 5 23 540 558 537 560 0.90 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF23-211 - 623 9.5e-21 73.2 82.3 16 17 0.024 24 4.8 0.1 5 15 568 578 565 582 0.84 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF23-211 - 623 9.5e-21 73.2 82.3 17 17 1.6 1.6e+03 -1.0 0.9 7 23 598 614 596 617 0.85 zinc-finger C2H2-type Zn-ribbon_8 PF09723.10 40 ZNF23-211 - 623 1.2e-16 60.5 85.8 1 13 0.003 3 8.1 3.7 6 34 176 211 174 214 0.77 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF23-211 - 623 1.2e-16 60.5 85.8 2 13 0.0013 1.3 9.2 3.0 6 34 204 239 203 240 0.91 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF23-211 - 623 1.2e-16 60.5 85.8 3 13 6.6e-06 0.0066 16.5 1.7 6 34 232 267 231 271 0.92 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF23-211 - 623 1.2e-16 60.5 85.8 4 13 1e-05 0.01 16.0 2.8 6 34 288 323 287 326 0.91 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF23-211 - 623 1.2e-16 60.5 85.8 5 13 0.00015 0.15 12.2 6.5 6 34 316 351 314 360 0.92 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF23-211 - 623 1.2e-16 60.5 85.8 6 13 4.8e-05 0.048 13.8 4.7 6 34 344 379 343 382 0.92 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF23-211 - 623 1.2e-16 60.5 85.8 7 13 1.6e-05 0.016 15.3 3.8 6 35 372 408 371 410 0.91 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF23-211 - 623 1.2e-16 60.5 85.8 8 13 0.0025 2.5 8.3 7.0 6 34 400 435 399 438 0.84 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF23-211 - 623 1.2e-16 60.5 85.8 9 13 0.00021 0.21 11.7 5.4 6 34 428 463 427 471 0.87 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF23-211 - 623 1.2e-16 60.5 85.8 10 13 0.0088 8.7 6.6 7.6 6 34 456 491 455 493 0.89 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF23-211 - 623 1.2e-16 60.5 85.8 11 13 0.001 1 9.5 4.2 6 34 484 519 483 522 0.89 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF23-211 - 623 1.2e-16 60.5 85.8 12 13 0.0064 6.4 7.0 6.0 6 34 512 547 511 551 0.90 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF23-211 - 623 1.2e-16 60.5 85.8 13 13 0.00031 0.31 11.2 0.5 6 36 568 605 567 609 0.89 Zinc ribbon domain zf-C2H2_6 PF13912.6 27 ZNF23-211 - 623 2.2e-11 43.4 106.4 1 16 0.00057 0.57 10.3 0.3 2 24 176 198 176 201 0.81 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF23-211 - 623 2.2e-11 43.4 106.4 2 16 0.012 12 6.1 2.6 2 13 204 215 204 216 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF23-211 - 623 2.2e-11 43.4 106.4 3 16 0.024 24 5.1 0.2 2 12 232 242 232 243 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF23-211 - 623 2.2e-11 43.4 106.4 4 16 0.034 34 4.6 1.1 2 12 260 270 260 280 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF23-211 - 623 2.2e-11 43.4 106.4 5 16 0.03 30 4.8 0.1 2 12 288 298 288 308 0.95 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF23-211 - 623 2.2e-11 43.4 106.4 6 16 0.0032 3.2 7.9 1.3 2 12 316 326 316 336 0.92 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF23-211 - 623 2.2e-11 43.4 106.4 7 16 0.0016 1.5 8.9 0.4 2 20 344 362 344 368 0.78 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF23-211 - 623 2.2e-11 43.4 106.4 8 16 0.00085 0.85 9.7 0.6 2 12 372 382 372 383 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF23-211 - 623 2.2e-11 43.4 106.4 9 16 0.0014 1.4 9.0 0.5 2 12 400 410 400 410 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF23-211 - 623 2.2e-11 43.4 106.4 10 16 0.0013 1.3 9.1 0.6 2 12 428 438 428 439 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF23-211 - 623 2.2e-11 43.4 106.4 11 16 0.013 13 5.9 1.9 2 17 456 471 456 479 0.81 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF23-211 - 623 2.2e-11 43.4 106.4 12 16 0.0026 2.6 8.2 0.5 2 12 484 494 484 495 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF23-211 - 623 2.2e-11 43.4 106.4 13 16 0.12 1.2e+02 2.8 0.7 2 12 512 522 512 522 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF23-211 - 623 2.2e-11 43.4 106.4 14 16 0.003 3 7.9 2.0 2 24 540 562 540 565 0.79 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF23-211 - 623 2.2e-11 43.4 106.4 15 16 0.085 85 3.3 0.6 2 12 568 578 568 578 0.92 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF23-211 - 623 2.2e-11 43.4 106.4 16 16 0.0079 7.9 6.6 0.1 2 12 596 606 596 606 0.87 C2H2-type zinc finger zf_UBZ PF18439.1 32 ZNF23-211 - 623 5.3e-10 38.7 72.9 1 16 0.00045 0.45 10.2 0.1 3 17 176 190 174 194 0.90 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF23-211 - 623 5.3e-10 38.7 72.9 2 16 0.048 48 3.7 0.2 3 14 204 215 202 223 0.81 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF23-211 - 623 5.3e-10 38.7 72.9 3 16 0.021 21 4.8 0.0 3 20 232 250 230 251 0.82 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF23-211 - 623 5.3e-10 38.7 72.9 4 16 0.026 26 4.5 0.5 3 20 260 278 258 279 0.80 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF23-211 - 623 5.3e-10 38.7 72.9 5 16 0.0071 7.1 6.3 0.1 3 21 288 307 286 307 0.87 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF23-211 - 623 5.3e-10 38.7 72.9 6 16 0.016 16 5.2 1.0 3 21 316 335 314 335 0.90 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF23-211 - 623 5.3e-10 38.7 72.9 7 16 0.0076 7.6 6.2 0.1 3 20 344 362 342 363 0.81 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF23-211 - 623 5.3e-10 38.7 72.9 8 16 0.0024 2.4 7.8 0.1 3 21 372 391 370 391 0.88 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF23-211 - 623 5.3e-10 38.7 72.9 9 16 0.017 17 5.1 0.7 3 20 400 418 398 419 0.87 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF23-211 - 623 5.3e-10 38.7 72.9 10 16 0.0035 3.5 7.3 0.1 3 21 428 447 426 447 0.86 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF23-211 - 623 5.3e-10 38.7 72.9 11 16 0.25 2.5e+02 1.4 0.7 3 14 456 467 454 475 0.79 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF23-211 - 623 5.3e-10 38.7 72.9 12 16 0.00073 0.72 9.5 0.1 3 20 484 502 482 503 0.83 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF23-211 - 623 5.3e-10 38.7 72.9 13 16 0.51 5e+02 0.4 0.7 3 15 512 524 510 530 0.87 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF23-211 - 623 5.3e-10 38.7 72.9 14 16 0.0093 9.3 5.9 0.2 3 15 540 552 538 559 0.83 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF23-211 - 623 5.3e-10 38.7 72.9 15 16 0.22 2.2e+02 1.5 0.1 3 15 568 580 566 587 0.81 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF23-211 - 623 5.3e-10 38.7 72.9 16 16 0.067 67 3.2 0.0 3 21 596 615 594 615 0.89 Ubiquitin-Binding Zinc Finger C1_4 PF07975.12 55 ZNF23-211 - 623 5.2e-08 33.0 79.6 1 14 7.4e-05 0.073 13.3 0.2 5 49 159 199 155 201 0.82 TFIIH C1-like domain C1_4 PF07975.12 55 ZNF23-211 - 623 5.2e-08 33.0 79.6 2 14 0.014 14 6.0 6.2 1 49 205 255 205 267 0.86 TFIIH C1-like domain C1_4 PF07975.12 55 ZNF23-211 - 623 5.2e-08 33.0 79.6 3 14 0.16 1.6e+02 2.6 1.1 22 48 256 282 248 285 0.73 TFIIH C1-like domain C1_4 PF07975.12 55 ZNF23-211 - 623 5.2e-08 33.0 79.6 4 14 0.019 19 5.6 4.2 5 49 265 311 261 313 0.72 TFIIH C1-like domain C1_4 PF07975.12 55 ZNF23-211 - 623 5.2e-08 33.0 79.6 5 14 0.03 30 5.0 4.3 1 49 289 339 289 342 0.81 TFIIH C1-like domain C1_4 PF07975.12 55 ZNF23-211 - 623 5.2e-08 33.0 79.6 6 14 0.1 99 3.3 3.7 2 48 318 366 317 369 0.71 TFIIH C1-like domain C1_4 PF07975.12 55 ZNF23-211 - 623 5.2e-08 33.0 79.6 7 14 0.00083 0.82 9.9 1.1 2 49 346 395 345 397 0.84 TFIIH C1-like domain C1_4 PF07975.12 55 ZNF23-211 - 623 5.2e-08 33.0 79.6 8 14 0.095 95 3.3 4.5 1 35 373 409 373 418 0.80 TFIIH C1-like domain C1_4 PF07975.12 55 ZNF23-211 - 623 5.2e-08 33.0 79.6 9 14 0.0019 1.9 8.8 2.8 2 49 402 451 401 454 0.75 TFIIH C1-like domain C1_4 PF07975.12 55 ZNF23-211 - 623 5.2e-08 33.0 79.6 10 14 0.0032 3.2 8.1 3.4 2 49 458 507 457 509 0.78 TFIIH C1-like domain C1_4 PF07975.12 55 ZNF23-211 - 623 5.2e-08 33.0 79.6 11 14 0.046 45 4.4 1.4 25 49 511 535 504 538 0.88 TFIIH C1-like domain C1_4 PF07975.12 55 ZNF23-211 - 623 5.2e-08 33.0 79.6 12 14 0.025 25 5.2 6.4 1 48 513 562 513 565 0.85 TFIIH C1-like domain C1_4 PF07975.12 55 ZNF23-211 - 623 5.2e-08 33.0 79.6 13 14 0.0011 1.1 9.5 3.5 2 49 542 591 541 593 0.83 TFIIH C1-like domain C1_4 PF07975.12 55 ZNF23-211 - 623 5.2e-08 33.0 79.6 14 14 1.3 1.3e+03 -0.3 0.1 25 48 595 618 591 619 0.77 TFIIH C1-like domain # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF23-211.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF23-211.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF23-211.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF23-211.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF23-211.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:02:09 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZNF23-212 - 686 2.9e-125 403.6 118.5 1 18 0.44 4.4e+02 1.6 0.1 2 18 198 214 197 216 0.80 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF23-212 - 686 2.9e-125 403.6 118.5 2 18 2.9e-06 0.0029 18.0 0.1 10 25 234 249 226 249 0.83 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF23-212 - 686 2.9e-125 403.6 118.5 3 18 2.1e-09 2.1e-06 27.9 0.4 2 25 254 277 253 278 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF23-212 - 686 2.9e-125 403.6 118.5 4 18 8e-08 7.9e-05 22.9 1.5 4 25 284 305 281 305 0.90 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF23-212 - 686 2.9e-125 403.6 118.5 5 18 1.9e-11 1.9e-08 34.3 1.0 1 25 309 333 309 334 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF23-212 - 686 2.9e-125 403.6 118.5 6 18 9.4e-11 9.4e-08 32.2 0.3 4 25 340 361 337 361 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF23-212 - 686 2.9e-125 403.6 118.5 7 18 3e-10 3e-07 30.6 1.3 2 25 366 389 365 390 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF23-212 - 686 2.9e-125 403.6 118.5 8 18 2.1e-11 2.1e-08 34.2 0.3 2 26 394 418 393 418 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF23-212 - 686 2.9e-125 403.6 118.5 9 18 2.8e-11 2.8e-08 33.8 0.3 2 25 422 445 421 445 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF23-212 - 686 2.9e-125 403.6 118.5 10 18 8.6e-11 8.6e-08 32.3 1.3 2 25 450 473 449 474 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF23-212 - 686 2.9e-125 403.6 118.5 11 18 1.2e-11 1.2e-08 35.0 0.5 2 25 478 501 477 501 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF23-212 - 686 2.9e-125 403.6 118.5 12 18 7.4e-11 7.3e-08 32.5 1.8 2 26 506 530 505 530 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF23-212 - 686 2.9e-125 403.6 118.5 13 18 1.4e-10 1.4e-07 31.6 1.0 1 25 533 557 533 557 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF23-212 - 686 2.9e-125 403.6 118.5 14 18 1.5e-11 1.5e-08 34.7 3.2 2 25 562 585 561 586 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF23-212 - 686 2.9e-125 403.6 118.5 15 18 2.3e-10 2.3e-07 30.9 1.5 4 24 592 612 589 613 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF23-212 - 686 2.9e-125 403.6 118.5 16 18 2.8e-10 2.8e-07 30.6 1.0 1 25 617 641 617 641 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF23-212 - 686 2.9e-125 403.6 118.5 17 18 6.5e-06 0.0065 16.9 0.3 5 24 649 668 645 669 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF23-212 - 686 2.9e-125 403.6 118.5 18 18 6.6 6.5e+03 -2.1 0.0 2 10 674 682 673 685 0.84 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZNF23-212 - 686 5.1e-77 250.3 119.3 1 16 3.6e-07 0.00036 20.8 0.1 1 23 239 261 239 261 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF23-212 - 686 5.1e-77 250.3 119.3 2 16 2.5e-07 0.00024 21.4 2.8 1 23 267 289 267 289 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF23-212 - 686 5.1e-77 250.3 119.3 3 16 2.5e-08 2.5e-05 24.5 0.5 1 23 295 317 295 317 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF23-212 - 686 5.1e-77 250.3 119.3 4 16 0.00017 0.17 12.4 1.5 1 23 323 345 323 345 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF23-212 - 686 5.1e-77 250.3 119.3 5 16 8.5e-08 8.5e-05 22.8 0.1 1 23 351 373 351 373 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF23-212 - 686 5.1e-77 250.3 119.3 6 16 3.8e-06 0.0038 17.6 1.8 1 23 379 401 379 401 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF23-212 - 686 5.1e-77 250.3 119.3 7 16 4.2e-08 4.2e-05 23.8 0.5 1 23 407 429 407 429 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF23-212 - 686 5.1e-77 250.3 119.3 8 16 1.2e-07 0.00012 22.3 0.1 1 23 435 457 435 457 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF23-212 - 686 5.1e-77 250.3 119.3 9 16 3.2e-06 0.0031 17.9 2.5 1 23 463 485 463 485 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF23-212 - 686 5.1e-77 250.3 119.3 10 16 2.6e-08 2.5e-05 24.4 0.2 1 23 491 513 491 513 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF23-212 - 686 5.1e-77 250.3 119.3 11 16 4.8e-07 0.00047 20.4 4.4 1 23 519 541 519 541 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF23-212 - 686 5.1e-77 250.3 119.3 12 16 5.1e-08 5.1e-05 23.5 0.4 1 23 547 569 547 569 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF23-212 - 686 5.1e-77 250.3 119.3 13 16 2e-05 0.02 15.3 2.1 1 23 575 597 575 597 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF23-212 - 686 5.1e-77 250.3 119.3 14 16 2.8e-07 0.00028 21.2 2.8 1 23 603 625 603 625 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF23-212 - 686 5.1e-77 250.3 119.3 15 16 2.9e-06 0.0029 18.0 0.3 1 23 631 653 631 653 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF23-212 - 686 5.1e-77 250.3 119.3 16 16 1.9e-06 0.0019 18.6 1.0 1 23 659 681 659 681 0.98 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZNF23-212 - 686 3.1e-47 155.1 117.6 1 17 3.2 3.2e+03 -0.5 0.0 8 21 218 231 211 232 0.77 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF23-212 - 686 3.1e-47 155.1 117.6 2 17 0.0027 2.7 9.1 0.3 1 23 239 261 239 262 0.74 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF23-212 - 686 3.1e-47 155.1 117.6 3 17 0.00022 0.22 12.5 2.4 1 23 267 289 267 290 0.91 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF23-212 - 686 3.1e-47 155.1 117.6 4 17 3.5e-06 0.0035 18.1 0.4 1 23 295 317 295 318 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF23-212 - 686 3.1e-47 155.1 117.6 5 17 3.8e-05 0.038 14.8 1.4 1 23 323 345 323 346 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF23-212 - 686 3.1e-47 155.1 117.6 6 17 0.00021 0.21 12.6 0.1 1 23 351 373 351 374 0.91 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF23-212 - 686 3.1e-47 155.1 117.6 7 17 9.2e-06 0.0091 16.8 1.8 1 23 379 401 379 402 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF23-212 - 686 3.1e-47 155.1 117.6 8 17 5.7e-06 0.0057 17.4 0.3 1 23 407 429 407 430 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF23-212 - 686 3.1e-47 155.1 117.6 9 17 1.3e-05 0.013 16.2 0.2 1 23 435 457 435 458 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF23-212 - 686 3.1e-47 155.1 117.6 10 17 5e-06 0.0049 17.6 2.1 1 23 463 485 463 486 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF23-212 - 686 3.1e-47 155.1 117.6 11 17 2.6e-05 0.026 15.4 0.2 1 23 491 513 491 514 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF23-212 - 686 3.1e-47 155.1 117.6 12 17 2.8e-05 0.028 15.3 3.3 1 23 519 541 519 542 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF23-212 - 686 3.1e-47 155.1 117.6 13 17 2.8e-05 0.028 15.2 0.4 1 23 547 569 547 570 0.89 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF23-212 - 686 3.1e-47 155.1 117.6 14 17 0.00043 0.43 11.5 2.2 1 23 575 597 575 598 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF23-212 - 686 3.1e-47 155.1 117.6 15 17 4.3e-05 0.043 14.7 2.6 1 23 603 625 603 626 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF23-212 - 686 3.1e-47 155.1 117.6 16 17 0.0028 2.8 9.0 0.4 1 23 631 653 631 654 0.88 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF23-212 - 686 3.1e-47 155.1 117.6 17 17 0.00016 0.16 12.9 1.4 1 23 659 681 659 682 0.93 C2H2-type zinc finger KRAB PF01352.27 42 ZNF23-212 - 686 6e-25 86.6 0.1 1 1 1.1e-27 1.1e-24 85.7 0.1 1 42 13 54 13 54 0.99 KRAB box zf-C2H2_11 PF16622.5 29 ZNF23-212 - 686 5.8e-20 70.7 82.4 1 17 4.9 4.9e+03 -2.6 0.3 2 7 169 174 168 175 0.85 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF23-212 - 686 5.8e-20 70.7 82.4 2 17 0.0021 2.1 8.2 0.0 5 18 239 252 235 260 0.81 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF23-212 - 686 5.8e-20 70.7 82.4 3 17 0.022 22 4.9 0.2 5 15 267 277 264 281 0.85 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF23-212 - 686 5.8e-20 70.7 82.4 4 17 8.7e-08 8.6e-05 22.2 0.4 5 26 295 316 292 317 0.94 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF23-212 - 686 5.8e-20 70.7 82.4 5 17 0.023 23 4.8 0.8 5 16 323 334 320 341 0.87 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF23-212 - 686 5.8e-20 70.7 82.4 6 17 0.24 2.4e+02 1.6 0.0 6 26 352 372 350 373 0.86 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF23-212 - 686 5.8e-20 70.7 82.4 7 17 0.23 2.3e+02 1.7 1.6 6 26 380 400 377 401 0.86 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF23-212 - 686 5.8e-20 70.7 82.4 8 17 0.011 11 5.8 0.1 5 26 407 428 404 429 0.84 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF23-212 - 686 5.8e-20 70.7 82.4 9 17 0.00074 0.74 9.6 0.1 6 26 436 456 433 457 0.93 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF23-212 - 686 5.8e-20 70.7 82.4 10 17 0.12 1.2e+02 2.6 0.8 6 26 464 484 461 485 0.90 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF23-212 - 686 5.8e-20 70.7 82.4 11 17 7.5e-05 0.075 12.8 0.1 6 26 492 512 489 513 0.93 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF23-212 - 686 5.8e-20 70.7 82.4 12 17 4.2e-06 0.0042 16.8 0.9 6 26 520 540 517 541 0.85 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF23-212 - 686 5.8e-20 70.7 82.4 13 17 2.3e-06 0.0023 17.7 0.1 5 26 547 568 544 569 0.94 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF23-212 - 686 5.8e-20 70.7 82.4 14 17 0.76 7.5e+02 0.0 0.6 5 15 575 585 572 588 0.83 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF23-212 - 686 5.8e-20 70.7 82.4 15 17 0.0037 3.7 7.4 0.2 5 23 603 621 600 623 0.90 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF23-212 - 686 5.8e-20 70.7 82.4 16 17 0.026 26 4.7 0.1 5 15 631 641 628 645 0.84 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF23-212 - 686 5.8e-20 70.7 82.4 17 17 1.8 1.8e+03 -1.2 0.9 7 23 661 677 659 680 0.85 zinc-finger C2H2-type Zn-ribbon_8 PF09723.10 40 ZNF23-212 - 686 1.3e-16 60.4 84.2 1 14 0.0027 2.6 8.2 3.4 6 34 239 274 238 277 0.76 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF23-212 - 686 1.3e-16 60.4 84.2 2 14 0.0024 2.4 8.4 3.2 6 34 267 302 266 302 0.91 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF23-212 - 686 1.3e-16 60.4 84.2 3 14 7.3e-06 0.0073 16.4 1.7 6 34 295 330 293 334 0.92 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF23-212 - 686 1.3e-16 60.4 84.2 4 14 1.1e-05 0.011 15.8 2.8 6 34 351 386 350 389 0.91 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF23-212 - 686 1.3e-16 60.4 84.2 5 14 0.00019 0.19 11.9 6.6 6 34 379 414 378 423 0.92 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF23-212 - 686 1.3e-16 60.4 84.2 6 14 3.7e-05 0.037 14.1 4.4 6 34 407 442 406 447 0.91 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF23-212 - 686 1.3e-16 60.4 84.2 7 14 3.4e-05 0.034 14.3 4.9 6 36 435 472 433 474 0.91 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF23-212 - 686 1.3e-16 60.4 84.2 8 14 0.0027 2.7 8.2 6.9 6 34 463 498 462 501 0.84 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF23-212 - 686 1.3e-16 60.4 84.2 9 14 0.00027 0.27 11.4 5.5 6 34 491 526 490 534 0.87 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF23-212 - 686 1.3e-16 60.4 84.2 10 14 0.0068 6.8 6.9 7.3 6 34 519 554 518 557 0.88 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF23-212 - 686 1.3e-16 60.4 84.2 11 14 0.00077 0.76 9.9 3.6 6 34 547 582 546 585 0.89 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF23-212 - 686 1.3e-16 60.4 84.2 12 14 0.0065 6.5 7.0 5.9 6 34 575 610 574 615 0.90 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF23-212 - 686 1.3e-16 60.4 84.2 13 14 0.014 14 5.9 0.4 6 17 603 614 602 624 0.84 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF23-212 - 686 1.3e-16 60.4 84.2 14 14 0.00035 0.35 11.0 0.5 6 36 631 668 630 672 0.89 Zinc ribbon domain zf-C2H2_6 PF13912.6 27 ZNF23-212 - 686 1.4e-10 40.9 106.6 1 16 0.00064 0.63 10.1 0.3 2 24 239 261 239 264 0.81 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF23-212 - 686 1.4e-10 40.9 106.6 2 16 0.013 13 5.9 2.6 2 13 267 278 267 279 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF23-212 - 686 1.4e-10 40.9 106.6 3 16 0.027 27 4.9 0.2 2 12 295 305 295 306 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF23-212 - 686 1.4e-10 40.9 106.6 4 16 0.038 37 4.4 1.1 2 12 323 333 323 343 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF23-212 - 686 1.4e-10 40.9 106.6 5 16 0.034 34 4.6 0.1 2 12 351 361 351 370 0.95 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF23-212 - 686 1.4e-10 40.9 106.6 6 16 0.0035 3.5 7.7 1.3 2 12 379 389 379 399 0.92 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF23-212 - 686 1.4e-10 40.9 106.6 7 16 0.0017 1.7 8.7 0.4 2 20 407 425 407 431 0.78 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF23-212 - 686 1.4e-10 40.9 106.6 8 16 0.00094 0.94 9.6 0.6 2 12 435 445 435 446 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF23-212 - 686 1.4e-10 40.9 106.6 9 16 0.0015 1.5 8.9 0.5 2 12 463 473 463 473 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF23-212 - 686 1.4e-10 40.9 106.6 10 16 0.0014 1.4 9.0 0.6 2 12 491 501 491 502 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF23-212 - 686 1.4e-10 40.9 106.6 11 16 0.015 15 5.8 1.9 2 17 519 534 519 542 0.81 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF23-212 - 686 1.4e-10 40.9 106.6 12 16 0.0029 2.8 8.0 0.5 2 12 547 557 547 558 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF23-212 - 686 1.4e-10 40.9 106.6 13 16 0.14 1.4e+02 2.7 0.7 2 12 575 585 575 585 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF23-212 - 686 1.4e-10 40.9 106.6 14 16 0.0034 3.4 7.8 2.0 2 24 603 625 603 628 0.78 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF23-212 - 686 1.4e-10 40.9 106.6 15 16 0.095 94 3.2 0.6 2 12 631 641 631 641 0.92 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF23-212 - 686 1.4e-10 40.9 106.6 16 16 0.0088 8.8 6.5 0.1 2 12 659 669 659 669 0.87 C2H2-type zinc finger zf_UBZ PF18439.1 32 ZNF23-212 - 686 2.9e-09 36.4 72.9 1 16 0.0005 0.5 10.0 0.1 3 17 239 253 237 257 0.90 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF23-212 - 686 2.9e-09 36.4 72.9 2 16 0.054 54 3.5 0.2 3 14 267 278 265 286 0.81 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF23-212 - 686 2.9e-09 36.4 72.9 3 16 0.024 24 4.6 0.0 3 20 295 313 293 314 0.82 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF23-212 - 686 2.9e-09 36.4 72.9 4 16 0.029 29 4.4 0.5 3 20 323 341 321 342 0.80 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF23-212 - 686 2.9e-09 36.4 72.9 5 16 0.0079 7.9 6.2 0.1 3 21 351 370 349 370 0.87 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF23-212 - 686 2.9e-09 36.4 72.9 6 16 0.018 18 5.0 1.0 3 21 379 398 377 398 0.90 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF23-212 - 686 2.9e-09 36.4 72.9 7 16 0.0085 8.5 6.1 0.1 3 20 407 425 405 426 0.81 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF23-212 - 686 2.9e-09 36.4 72.9 8 16 0.0027 2.7 7.7 0.1 3 21 435 454 433 454 0.88 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF23-212 - 686 2.9e-09 36.4 72.9 9 16 0.019 19 4.9 0.7 3 20 463 481 461 482 0.87 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF23-212 - 686 2.9e-09 36.4 72.9 10 16 0.0039 3.9 7.1 0.1 3 21 491 510 489 510 0.86 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF23-212 - 686 2.9e-09 36.4 72.9 11 16 0.28 2.8e+02 1.2 0.7 3 14 519 530 517 538 0.79 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF23-212 - 686 2.9e-09 36.4 72.9 12 16 0.00081 0.81 9.3 0.1 3 20 547 565 545 566 0.83 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF23-212 - 686 2.9e-09 36.4 72.9 13 16 0.56 5.6e+02 0.2 0.7 3 15 575 587 573 593 0.87 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF23-212 - 686 2.9e-09 36.4 72.9 14 16 0.01 10 5.8 0.2 3 15 603 615 601 622 0.83 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF23-212 - 686 2.9e-09 36.4 72.9 15 16 0.25 2.5e+02 1.4 0.1 3 15 631 643 629 650 0.81 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF23-212 - 686 2.9e-09 36.4 72.9 16 16 0.075 74 3.1 0.0 3 21 659 678 657 678 0.89 Ubiquitin-Binding Zinc Finger C1_4 PF07975.12 55 ZNF23-212 - 686 1.4e-07 31.6 79.1 1 14 8.3e-05 0.083 13.1 0.2 5 49 222 262 218 264 0.82 TFIIH C1-like domain C1_4 PF07975.12 55 ZNF23-212 - 686 1.4e-07 31.6 79.1 2 14 0.00084 0.84 9.9 1.9 1 49 268 318 268 321 0.87 TFIIH C1-like domain C1_4 PF07975.12 55 ZNF23-212 - 686 1.4e-07 31.6 79.1 3 14 0.1 1e+02 3.2 0.7 21 48 318 345 307 348 0.73 TFIIH C1-like domain C1_4 PF07975.12 55 ZNF23-212 - 686 1.4e-07 31.6 79.1 4 14 0.023 23 5.3 4.2 7 49 330 374 324 376 0.72 TFIIH C1-like domain C1_4 PF07975.12 55 ZNF23-212 - 686 1.4e-07 31.6 79.1 5 14 0.028 28 5.1 4.0 1 49 352 402 352 405 0.81 TFIIH C1-like domain C1_4 PF07975.12 55 ZNF23-212 - 686 1.4e-07 31.6 79.1 6 14 0.12 1.2e+02 3.1 3.6 2 48 381 429 380 431 0.71 TFIIH C1-like domain C1_4 PF07975.12 55 ZNF23-212 - 686 1.4e-07 31.6 79.1 7 14 0.00097 0.96 9.7 1.2 2 49 409 458 408 461 0.84 TFIIH C1-like domain C1_4 PF07975.12 55 ZNF23-212 - 686 1.4e-07 31.6 79.1 8 14 0.05 50 4.2 3.3 1 35 436 472 436 477 0.79 TFIIH C1-like domain C1_4 PF07975.12 55 ZNF23-212 - 686 1.4e-07 31.6 79.1 9 14 0.002 2 8.7 2.6 2 49 465 514 464 516 0.74 TFIIH C1-like domain C1_4 PF07975.12 55 ZNF23-212 - 686 1.4e-07 31.6 79.1 10 14 0.0035 3.5 7.9 3.3 2 49 521 570 520 572 0.78 TFIIH C1-like domain C1_4 PF07975.12 55 ZNF23-212 - 686 1.4e-07 31.6 79.1 11 14 0.059 59 4.0 1.4 25 49 574 598 568 600 0.88 TFIIH C1-like domain C1_4 PF07975.12 55 ZNF23-212 - 686 1.4e-07 31.6 79.1 12 14 0.024 24 5.3 6.1 1 48 576 625 576 628 0.85 TFIIH C1-like domain C1_4 PF07975.12 55 ZNF23-212 - 686 1.4e-07 31.6 79.1 13 14 0.0012 1.2 9.4 3.5 2 49 605 654 604 656 0.83 TFIIH C1-like domain C1_4 PF07975.12 55 ZNF23-212 - 686 1.4e-07 31.6 79.1 14 14 1.5 1.5e+03 -0.5 0.1 25 48 658 681 654 682 0.77 TFIIH C1-like domain # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF23-212.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF23-212.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF23-212.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF23-212.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF23-212.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:02:09 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- SCAN PF02023.17 90 ZNF232-201 - 444 2.3e-41 139.5 2.9 1 1 8.4e-44 5e-41 138.4 2.9 1 86 75 160 75 164 0.97 SCAN domain zf-H2C2_2 PF13465.6 26 ZNF232-201 - 444 1.4e-34 116.9 37.2 1 6 5e-05 0.03 14.8 0.6 10 24 298 312 292 314 0.90 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF232-201 - 444 1.4e-34 116.9 37.2 2 6 2.8e-11 1.7e-08 34.5 1.4 1 26 317 342 317 342 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF232-201 - 444 1.4e-34 116.9 37.2 3 6 1.6e-10 9.5e-08 32.1 0.2 4 24 348 368 345 369 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF232-201 - 444 1.4e-34 116.9 37.2 4 6 2.7e-11 1.6e-08 34.6 0.4 1 25 373 397 373 398 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF232-201 - 444 1.4e-34 116.9 37.2 5 6 4.2e-08 2.5e-05 24.5 0.3 2 24 402 424 401 425 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF232-201 - 444 1.4e-34 116.9 37.2 6 6 1.3 7.8e+02 0.8 0.3 2 9 430 437 429 442 0.81 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZNF232-201 - 444 2.2e-27 94.0 29.4 1 5 2.8e-08 1.7e-05 25.0 2.2 1 23 303 325 303 325 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF232-201 - 444 2.2e-27 94.0 29.4 2 5 8.9e-10 5.3e-07 29.7 1.0 1 23 331 353 331 353 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF232-201 - 444 2.2e-27 94.0 29.4 3 5 1.4e-05 0.0083 16.5 0.2 1 23 359 381 359 381 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF232-201 - 444 2.2e-27 94.0 29.4 4 5 1.4e-08 8.5e-06 26.0 0.7 1 23 387 409 387 409 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF232-201 - 444 2.2e-27 94.0 29.4 5 5 5.9e-05 0.035 14.6 0.6 1 23 415 437 415 437 0.97 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZNF232-201 - 444 8.6e-14 51.1 30.4 1 5 0.00025 0.15 13.0 2.3 1 23 303 325 303 326 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF232-201 - 444 8.6e-14 51.1 30.4 2 5 4.4e-06 0.0026 18.4 0.7 1 23 331 353 331 354 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF232-201 - 444 8.6e-14 51.1 30.4 3 5 0.0016 0.98 10.4 0.5 1 23 359 381 359 382 0.91 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF232-201 - 444 8.6e-14 51.1 30.4 4 5 1.2e-05 0.0075 17.0 0.7 1 23 387 409 387 410 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF232-201 - 444 8.6e-14 51.1 30.4 5 5 0.0013 0.8 10.7 0.7 1 23 415 437 415 438 0.87 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF232-201 - 444 1.6e-08 34.3 31.1 1 5 0.0002 0.12 12.4 0.6 2 11 303 312 302 314 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF232-201 - 444 1.6e-08 34.3 31.1 2 5 0.00052 0.31 11.1 1.4 2 24 331 353 331 356 0.90 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF232-201 - 444 1.6e-08 34.3 31.1 3 5 0.0018 1.1 9.4 1.6 2 12 359 369 359 380 0.76 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF232-201 - 444 1.6e-08 34.3 31.1 4 5 0.001 0.6 10.2 0.5 2 12 387 397 387 410 0.89 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF232-201 - 444 1.6e-08 34.3 31.1 5 5 0.0015 0.9 9.6 0.8 2 24 415 437 415 440 0.88 C2H2-type zinc finger # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF232-201.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF232-201.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF232-201.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF232-201.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF232-201.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:02:10 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- SCAN PF02023.17 90 ZNF232-202 - 192 6.6e-42 141.2 2.9 1 1 5.3e-46 9.5e-42 140.7 2.9 1 86 48 133 48 137 0.97 SCAN domain # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF232-202.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF232-202.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF232-202.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF232-202.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF232-202.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:02:10 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF232-203.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF232-203.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF232-203.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF232-203.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF232-203.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:02:10 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF232-204.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF232-204.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF232-204.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF232-204.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF232-204.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:02:11 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- SCAN PF02023.17 90 ZNF232-205 - 417 2.2e-41 139.6 2.9 1 1 7.8e-44 4.5e-41 138.6 2.9 1 86 48 133 48 137 0.97 SCAN domain zf-H2C2_2 PF13465.6 26 ZNF232-205 - 417 5.8e-35 118.2 36.7 1 6 4.8e-05 0.027 14.9 0.6 10 24 271 285 265 287 0.90 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF232-205 - 417 5.8e-35 118.2 36.7 2 6 2.7e-11 1.5e-08 34.6 1.4 1 26 290 315 290 315 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF232-205 - 417 5.8e-35 118.2 36.7 3 6 1.5e-10 8.8e-08 32.2 0.2 4 24 321 341 318 342 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF232-205 - 417 5.8e-35 118.2 36.7 4 6 2.6e-11 1.5e-08 34.7 0.4 1 25 346 370 346 371 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF232-205 - 417 5.8e-35 118.2 36.7 5 6 4e-08 2.3e-05 24.6 0.3 2 24 375 397 374 398 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF232-205 - 417 5.8e-35 118.2 36.7 6 6 1.3 7.3e+02 0.9 0.3 2 9 403 410 402 415 0.81 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZNF232-205 - 417 1.4e-27 94.5 29.4 1 5 2.7e-08 1.5e-05 25.1 2.2 1 23 276 298 276 298 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF232-205 - 417 1.4e-27 94.5 29.4 2 5 8.5e-10 4.9e-07 29.8 1.0 1 23 304 326 304 326 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF232-205 - 417 1.4e-27 94.5 29.4 3 5 1.3e-05 0.0077 16.6 0.2 1 23 332 354 332 354 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF232-205 - 417 1.4e-27 94.5 29.4 4 5 1.4e-08 7.8e-06 26.1 0.7 1 23 360 382 360 382 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF232-205 - 417 1.4e-27 94.5 29.4 5 5 5.6e-05 0.032 14.7 0.6 1 23 388 410 388 410 0.97 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZNF232-205 - 417 5.7e-14 51.6 30.4 1 5 0.00024 0.14 13.1 2.3 1 23 276 298 276 299 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF232-205 - 417 5.7e-14 51.6 30.4 2 5 4.2e-06 0.0024 18.5 0.7 1 23 304 326 304 327 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF232-205 - 417 5.7e-14 51.6 30.4 3 5 0.0016 0.91 10.5 0.5 1 23 332 354 332 355 0.91 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF232-205 - 417 5.7e-14 51.6 30.4 4 5 1.2e-05 0.0069 17.1 0.7 1 23 360 382 360 383 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF232-205 - 417 5.7e-14 51.6 30.4 5 5 0.0013 0.74 10.8 0.7 1 23 388 410 388 411 0.87 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF232-205 - 417 1.1e-08 34.9 31.1 1 5 0.00019 0.11 12.5 0.6 2 11 276 285 275 287 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF232-205 - 417 1.1e-08 34.9 31.1 2 5 0.0005 0.29 11.2 1.4 2 24 304 326 304 329 0.90 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF232-205 - 417 1.1e-08 34.9 31.1 3 5 0.0017 1 9.5 1.6 2 12 332 342 332 353 0.76 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF232-205 - 417 1.1e-08 34.9 31.1 4 5 0.00096 0.56 10.3 0.5 2 12 360 370 360 383 0.89 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF232-205 - 417 1.1e-08 34.9 31.1 5 5 0.0014 0.84 9.7 0.8 2 24 388 410 388 413 0.88 C2H2-type zinc finger # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF232-205.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF232-205.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF232-205.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF232-205.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF232-205.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:02:11 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- SCAN PF02023.17 90 ZNF232-206 - 171 5.3e-42 141.5 2.9 1 1 4e-46 7.1e-42 141.1 2.9 1 86 27 112 27 116 0.97 SCAN domain # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF232-206.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF232-206.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF232-206.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF232-206.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF232-206.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:02:12 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF232-207.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF232-207.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF232-207.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF232-207.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF232-207.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:02:12 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- SCAN PF02023.17 90 ZNF232-208 - 435 2.3e-41 139.5 2.9 1 1 8.7e-44 4.9e-41 138.5 2.9 1 86 75 160 75 164 0.97 SCAN domain zf-H2C2_2 PF13465.6 26 ZNF232-208 - 435 1.2e-34 117.2 37.2 1 6 5.2e-05 0.029 14.8 0.6 10 24 289 303 283 305 0.90 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF232-208 - 435 1.2e-34 117.2 37.2 2 6 2.9e-11 1.6e-08 34.6 1.4 1 26 308 333 308 333 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF232-208 - 435 1.2e-34 117.2 37.2 3 6 1.7e-10 9.3e-08 32.2 0.2 4 24 339 359 336 360 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF232-208 - 435 1.2e-34 117.2 37.2 4 6 2.8e-11 1.6e-08 34.6 0.4 1 25 364 388 364 389 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF232-208 - 435 1.2e-34 117.2 37.2 5 6 4.4e-08 2.5e-05 24.5 0.3 2 24 393 415 392 416 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF232-208 - 435 1.2e-34 117.2 37.2 6 6 1.4 7.6e+02 0.8 0.3 2 9 421 428 420 433 0.81 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZNF232-208 - 435 2.1e-27 94.0 29.4 1 5 2.9e-08 1.6e-05 25.1 2.2 1 23 294 316 294 316 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF232-208 - 435 2.1e-27 94.0 29.4 2 5 9.2e-10 5.2e-07 29.8 1.0 1 23 322 344 322 344 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF232-208 - 435 2.1e-27 94.0 29.4 3 5 1.5e-05 0.0081 16.6 0.2 1 23 350 372 350 372 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF232-208 - 435 2.1e-27 94.0 29.4 4 5 1.5e-08 8.3e-06 26.0 0.7 1 23 378 400 378 400 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF232-208 - 435 2.1e-27 94.0 29.4 5 5 6.1e-05 0.034 14.6 0.6 1 23 406 428 406 428 0.97 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZNF232-208 - 435 8.7e-14 51.0 30.4 1 5 0.00026 0.15 13.0 2.3 1 23 294 316 294 317 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF232-208 - 435 8.7e-14 51.0 30.4 2 5 4.6e-06 0.0026 18.5 0.7 1 23 322 344 322 345 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF232-208 - 435 8.7e-14 51.0 30.4 3 5 0.0017 0.96 10.5 0.5 1 23 350 372 350 373 0.91 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF232-208 - 435 8.7e-14 51.0 30.4 4 5 1.3e-05 0.0073 17.1 0.7 1 23 378 400 378 401 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF232-208 - 435 8.7e-14 51.0 30.4 5 5 0.0014 0.78 10.8 0.7 1 23 406 428 406 429 0.87 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF232-208 - 435 1.4e-08 34.5 31.1 1 5 0.00021 0.12 12.4 0.6 2 11 294 303 293 305 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF232-208 - 435 1.4e-08 34.5 31.1 2 5 0.00054 0.3 11.1 1.4 2 24 322 344 322 347 0.90 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF232-208 - 435 1.4e-08 34.5 31.1 3 5 0.0019 1 9.4 1.6 2 12 350 360 350 371 0.76 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF232-208 - 435 1.4e-08 34.5 31.1 4 5 0.001 0.59 10.2 0.5 2 12 378 388 378 401 0.89 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF232-208 - 435 1.4e-08 34.5 31.1 5 5 0.0016 0.88 9.6 0.8 2 24 406 428 406 431 0.88 C2H2-type zinc finger # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF232-208.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF232-208.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF232-208.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF232-208.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF232-208.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:02:12 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZNF235-201 - 738 2.2e-116 375.6 127.1 1 19 5.7 6.8e+03 -2.2 0.0 2 10 158 166 158 175 0.78 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF235-201 - 738 2.2e-116 375.6 127.1 2 19 0.047 56 4.4 0.0 8 24 256 272 253 273 0.77 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF235-201 - 738 2.2e-116 375.6 127.1 3 19 0.4 4.8e+02 1.5 0.4 2 13 278 289 277 296 0.81 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF235-201 - 738 2.2e-116 375.6 127.1 4 19 0.0038 4.6 7.9 0.2 10 25 314 329 310 330 0.90 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF235-201 - 738 2.2e-116 375.6 127.1 5 19 5.8e-12 6.9e-09 35.7 1.4 1 25 333 357 333 358 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF235-201 - 738 2.2e-116 375.6 127.1 6 19 6.9e-09 8.2e-06 26.0 0.8 1 25 361 385 361 386 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF235-201 - 738 2.2e-116 375.6 127.1 7 19 1.2e-11 1.5e-08 34.7 0.8 1 25 389 413 389 414 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF235-201 - 738 2.2e-116 375.6 127.1 8 19 3.3e-10 3.9e-07 30.2 2.6 1 25 417 441 417 442 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF235-201 - 738 2.2e-116 375.6 127.1 9 19 2.8e-08 3.4e-05 24.1 4.8 3 25 447 469 445 469 0.90 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF235-201 - 738 2.2e-116 375.6 127.1 10 19 5.2e-11 6.2e-08 32.7 1.5 2 26 474 498 473 498 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF235-201 - 738 2.2e-116 375.6 127.1 11 19 1.4e-10 1.7e-07 31.3 0.4 2 25 502 525 501 526 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF235-201 - 738 2.2e-116 375.6 127.1 12 19 3.2e-11 3.8e-08 33.4 1.4 2 25 530 553 529 553 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF235-201 - 738 2.2e-116 375.6 127.1 13 19 6.9e-11 8.3e-08 32.3 1.4 2 25 558 581 557 582 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF235-201 - 738 2.2e-116 375.6 127.1 14 19 4.6e-11 5.5e-08 32.9 0.3 1 25 585 609 585 610 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF235-201 - 738 2.2e-116 375.6 127.1 15 19 2.2e-12 2.6e-09 37.1 0.8 1 25 613 637 613 638 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF235-201 - 738 2.2e-116 375.6 127.1 16 19 2.1e-10 2.5e-07 30.8 0.2 1 25 641 665 641 665 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF235-201 - 738 2.2e-116 375.6 127.1 17 19 1.2e-11 1.4e-08 34.8 0.1 1 25 669 693 669 694 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF235-201 - 738 2.2e-116 375.6 127.1 18 19 1.9e-06 0.0022 18.3 4.8 5 25 701 721 697 722 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF235-201 - 738 2.2e-116 375.6 127.1 19 19 0.032 39 4.9 0.5 1 11 725 735 725 737 0.88 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZNF235-201 - 738 1.1e-80 261.8 127.0 1 16 0.00083 0.99 10.0 0.0 5 23 267 285 265 285 0.95 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF235-201 - 738 1.1e-80 261.8 127.0 2 16 8.1e-09 9.6e-06 25.8 1.3 3 23 321 341 319 341 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF235-201 - 738 1.1e-80 261.8 127.0 3 16 6e-08 7.1e-05 23.0 2.4 1 20 347 366 347 369 0.94 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF235-201 - 738 1.1e-80 261.8 127.0 4 16 6.7e-06 0.008 16.6 2.1 1 23 375 397 375 397 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF235-201 - 738 1.1e-80 261.8 127.0 5 16 6.4e-09 7.6e-06 26.1 0.9 1 23 403 425 403 425 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF235-201 - 738 1.1e-80 261.8 127.0 6 16 1.1e-06 0.0013 19.1 5.3 1 23 431 453 431 453 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF235-201 - 738 1.1e-80 261.8 127.0 7 16 6.6e-07 0.00079 19.8 5.2 1 23 459 481 459 481 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF235-201 - 738 1.1e-80 261.8 127.0 8 16 7.5e-09 8.9e-06 25.9 0.5 1 23 487 509 487 509 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF235-201 - 738 1.1e-80 261.8 127.0 9 16 1.6e-08 1.9e-05 24.9 0.9 1 23 515 537 515 537 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF235-201 - 738 1.1e-80 261.8 127.0 10 16 1.2e-05 0.014 15.8 1.7 1 23 543 565 543 565 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF235-201 - 738 1.1e-80 261.8 127.0 11 16 3.1e-09 3.7e-06 27.1 0.1 1 23 571 593 571 593 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF235-201 - 738 1.1e-80 261.8 127.0 12 16 5.9e-08 7.1e-05 23.0 1.7 1 23 599 621 599 621 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF235-201 - 738 1.1e-80 261.8 127.0 13 16 2.3e-09 2.8e-06 27.5 0.3 1 23 627 649 627 649 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF235-201 - 738 1.1e-80 261.8 127.0 14 16 8e-06 0.0096 16.3 0.1 1 23 655 677 655 677 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF235-201 - 738 1.1e-80 261.8 127.0 15 16 4.1e-07 0.00049 20.4 4.5 1 23 683 705 683 705 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF235-201 - 738 1.1e-80 261.8 127.0 16 16 6.1e-05 0.073 13.6 3.8 1 23 711 733 711 733 0.97 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZNF235-201 - 738 5e-44 145.1 129.4 1 16 0.16 1.9e+02 3.3 0.0 4 23 266 285 263 286 0.85 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF235-201 - 738 5e-44 145.1 129.4 2 16 1e-05 0.012 16.4 1.5 1 23 319 341 319 342 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF235-201 - 738 5e-44 145.1 129.4 3 16 0.0001 0.12 13.3 2.1 1 23 347 369 347 370 0.90 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF235-201 - 738 5e-44 145.1 129.4 4 16 2.7e-05 0.032 15.1 1.3 1 23 375 397 375 398 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF235-201 - 738 5e-44 145.1 129.4 5 16 3.1e-06 0.0037 18.0 0.9 1 23 403 425 403 426 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF235-201 - 738 5e-44 145.1 129.4 6 16 1.5e-05 0.018 15.8 4.2 1 23 431 453 431 454 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF235-201 - 738 5e-44 145.1 129.4 7 16 0.00075 0.89 10.6 4.7 1 23 459 481 459 482 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF235-201 - 738 5e-44 145.1 129.4 8 16 2.2e-06 0.0026 18.4 0.8 1 23 487 509 487 510 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF235-201 - 738 5e-44 145.1 129.4 9 16 2.3e-05 0.027 15.3 1.0 1 23 515 537 515 538 0.91 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF235-201 - 738 5e-44 145.1 129.4 10 16 0.00018 0.22 12.5 1.6 1 23 543 565 543 566 0.89 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF235-201 - 738 5e-44 145.1 129.4 11 16 1.4e-05 0.017 15.9 0.2 1 23 571 593 571 594 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF235-201 - 738 5e-44 145.1 129.4 12 16 3.1e-05 0.038 14.8 1.9 1 23 599 621 599 622 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF235-201 - 738 5e-44 145.1 129.4 13 16 4.6e-05 0.055 14.3 0.3 1 23 627 649 627 650 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF235-201 - 738 5e-44 145.1 129.4 14 16 4.5e-05 0.054 14.4 0.2 1 23 655 677 655 678 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF235-201 - 738 5e-44 145.1 129.4 15 16 0.00018 0.22 12.5 3.6 1 23 683 705 683 706 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF235-201 - 738 5e-44 145.1 129.4 16 16 0.00014 0.17 12.8 3.2 1 23 711 733 711 734 0.94 C2H2-type zinc finger KRAB PF01352.27 42 ZNF235-201 - 738 2e-23 81.8 0.1 1 1 3.2e-26 3.8e-23 80.9 0.1 2 42 8 48 7 48 0.98 KRAB box zf-C2H2_jaz PF12171.8 27 ZNF235-201 - 738 6.2e-19 67.8 80.5 1 17 6 7.2e+03 -2.5 0.0 18 24 109 115 107 116 0.82 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF235-201 - 738 6.2e-19 67.8 80.5 2 17 0.52 6.3e+02 0.8 0.1 7 21 268 282 267 283 0.90 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF235-201 - 738 6.2e-19 67.8 80.5 3 17 0.00021 0.25 11.7 0.3 2 22 319 339 318 339 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF235-201 - 738 6.2e-19 67.8 80.5 4 17 0.069 83 3.6 0.5 2 17 347 362 346 366 0.78 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF235-201 - 738 6.2e-19 67.8 80.5 5 17 0.0074 8.8 6.7 0.0 2 22 375 395 374 395 0.91 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF235-201 - 738 6.2e-19 67.8 80.5 6 17 0.00068 0.81 10.0 0.0 2 22 403 423 402 423 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF235-201 - 738 6.2e-19 67.8 80.5 7 17 0.23 2.8e+02 2.0 0.5 2 22 431 451 430 451 0.90 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF235-201 - 738 6.2e-19 67.8 80.5 8 17 3.1 3.7e+03 -1.6 1.4 2 12 459 469 458 479 0.74 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF235-201 - 738 6.2e-19 67.8 80.5 9 17 1.1e-06 0.0013 19.0 0.1 2 22 487 507 486 507 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF235-201 - 738 6.2e-19 67.8 80.5 10 17 0.00065 0.78 10.1 0.1 2 22 515 535 514 535 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF235-201 - 738 6.2e-19 67.8 80.5 11 17 0.0025 3 8.3 0.4 2 22 543 563 542 563 0.91 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF235-201 - 738 6.2e-19 67.8 80.5 12 17 7.2e-05 0.086 13.2 0.1 2 21 571 590 570 591 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF235-201 - 738 6.2e-19 67.8 80.5 13 17 5.4e-05 0.065 13.5 0.7 2 22 599 619 598 619 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF235-201 - 738 6.2e-19 67.8 80.5 14 17 0.0073 8.7 6.8 0.1 2 21 627 646 626 647 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF235-201 - 738 6.2e-19 67.8 80.5 15 17 0.013 15 6.0 0.0 2 12 655 665 654 675 0.78 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF235-201 - 738 6.2e-19 67.8 80.5 16 17 0.004 4.7 7.6 0.6 2 22 683 703 682 703 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF235-201 - 738 6.2e-19 67.8 80.5 17 17 1.2 1.4e+03 -0.3 1.2 2 20 711 729 710 731 0.75 Zinc-finger double-stranded RNA-binding zf_UBZ PF18439.1 32 ZNF235-201 - 738 3.1e-12 45.8 73.2 1 15 0.0036 4.3 7.0 0.2 3 21 319 338 317 338 0.92 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF235-201 - 738 3.1e-12 45.8 73.2 2 15 0.0036 4.4 7.0 0.1 3 15 347 359 345 365 0.86 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF235-201 - 738 3.1e-12 45.8 73.2 3 15 0.038 46 3.7 0.1 3 16 375 389 373 393 0.80 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF235-201 - 738 3.1e-12 45.8 73.2 4 15 0.094 1.1e+02 2.5 0.2 3 20 403 421 401 422 0.80 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF235-201 - 738 3.1e-12 45.8 73.2 5 15 0.0031 3.7 7.2 0.7 3 21 431 450 429 450 0.86 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF235-201 - 738 3.1e-12 45.8 73.2 6 15 0.00045 0.54 9.9 1.2 3 21 459 478 457 478 0.91 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF235-201 - 738 3.1e-12 45.8 73.2 7 15 5.7e-05 0.068 12.8 0.2 3 21 487 506 485 506 0.94 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF235-201 - 738 3.1e-12 45.8 73.2 8 15 0.26 3.2e+02 1.0 0.0 3 21 515 534 513 534 0.83 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF235-201 - 738 3.1e-12 45.8 73.2 9 15 0.058 69 3.2 0.1 3 13 543 553 541 562 0.81 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF235-201 - 738 3.1e-12 45.8 73.2 10 15 0.00036 0.43 10.2 0.1 3 21 571 590 569 590 0.92 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF235-201 - 738 3.1e-12 45.8 73.2 11 15 0.0041 4.9 6.8 0.4 3 21 599 618 597 618 0.89 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF235-201 - 738 3.1e-12 45.8 73.2 12 15 0.0047 5.6 6.6 0.1 3 20 627 645 625 646 0.81 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF235-201 - 738 3.1e-12 45.8 73.2 13 15 0.0026 3.1 7.5 0.1 3 13 655 665 653 674 0.82 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF235-201 - 738 3.1e-12 45.8 73.2 14 15 0.002 2.4 7.8 0.4 3 17 683 698 681 702 0.78 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF235-201 - 738 3.1e-12 45.8 73.2 15 15 7.4 8.9e+03 -3.6 1.1 3 13 711 721 710 724 0.80 Ubiquitin-Binding Zinc Finger Zn-ribbon_8 PF09723.10 40 ZNF235-201 - 738 6.1e-12 45.5 86.4 1 14 7.4 8.9e+03 -3.1 0.0 6 16 263 273 262 283 0.76 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF235-201 - 738 6.1e-12 45.5 86.4 2 14 0.00031 0.37 10.9 2.9 6 34 319 354 318 358 0.87 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF235-201 - 738 6.1e-12 45.5 86.4 3 14 0.011 13 6.0 0.4 6 16 347 357 346 364 0.86 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF235-201 - 738 6.1e-12 45.5 86.4 4 14 0.0005 0.59 10.3 4.8 6 35 375 412 374 416 0.85 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF235-201 - 738 6.1e-12 45.5 86.4 5 14 0.0066 7.9 6.7 0.3 6 19 403 416 402 424 0.78 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF235-201 - 738 6.1e-12 45.5 86.4 6 14 0.00069 0.82 9.8 8.5 6 34 431 466 430 469 0.89 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF235-201 - 738 6.1e-12 45.5 86.4 7 14 0.00067 0.8 9.9 3.9 6 34 487 522 486 525 0.86 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF235-201 - 738 6.1e-12 45.5 86.4 8 14 0.00034 0.41 10.8 2.6 6 34 515 550 513 553 0.91 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF235-201 - 738 6.1e-12 45.5 86.4 9 14 4.2e-05 0.05 13.7 3.5 6 34 543 578 541 583 0.91 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF235-201 - 738 6.1e-12 45.5 86.4 10 14 0.00099 1.2 9.3 4.9 6 34 571 606 570 609 0.89 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF235-201 - 738 6.1e-12 45.5 86.4 11 14 0.00014 0.17 12.0 3.3 6 36 599 636 597 640 0.88 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF235-201 - 738 6.1e-12 45.5 86.4 12 14 0.0061 7.3 6.8 0.2 6 18 627 639 625 648 0.84 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF235-201 - 738 6.1e-12 45.5 86.4 13 14 1.5e-05 0.018 15.2 3.5 6 34 655 690 654 695 0.91 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF235-201 - 738 6.1e-12 45.5 86.4 14 14 0.0073 8.7 6.5 3.0 6 32 683 716 681 723 0.82 Zinc ribbon domain zf-met PF12874.7 25 ZNF235-201 - 738 2.2e-08 34.2 114.0 1 16 4.9 5.8e+03 -2.1 0.1 7 21 269 283 268 284 0.81 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF235-201 - 738 2.2e-08 34.2 114.0 2 16 0.018 21 5.6 1.6 1 21 319 339 319 341 0.94 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF235-201 - 738 2.2e-08 34.2 114.0 3 16 0.041 49 4.5 2.5 1 20 347 366 347 366 0.96 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF235-201 - 738 2.2e-08 34.2 114.0 4 16 0.0056 6.7 7.2 0.6 1 21 375 395 375 398 0.93 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF235-201 - 738 2.2e-08 34.2 114.0 5 16 5e-06 0.0059 17.0 0.4 1 22 403 424 403 426 0.92 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF235-201 - 738 2.2e-08 34.2 114.0 6 16 0.027 32 5.1 2.4 1 21 431 451 431 453 0.92 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF235-201 - 738 2.2e-08 34.2 114.0 7 16 8 9.6e+03 -2.8 1.8 1 19 459 477 459 479 0.72 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF235-201 - 738 2.2e-08 34.2 114.0 8 16 2e-05 0.023 15.1 0.8 1 21 487 507 487 509 0.93 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF235-201 - 738 2.2e-08 34.2 114.0 9 16 0.00079 0.95 9.9 0.7 1 21 515 535 515 537 0.93 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF235-201 - 738 2.2e-08 34.2 114.0 10 16 0.0047 5.6 7.5 0.4 1 11 543 553 543 564 0.81 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF235-201 - 738 2.2e-08 34.2 114.0 11 16 0.0038 4.6 7.8 0.6 1 20 571 590 571 593 0.93 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF235-201 - 738 2.2e-08 34.2 114.0 12 16 3.4e-05 0.041 14.3 1.5 1 21 599 619 599 621 0.93 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF235-201 - 738 2.2e-08 34.2 114.0 13 16 0.012 15 6.1 0.3 1 19 627 645 627 647 0.94 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF235-201 - 738 2.2e-08 34.2 114.0 14 16 0.94 1.1e+03 0.2 0.1 1 11 655 665 655 675 0.79 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF235-201 - 738 2.2e-08 34.2 114.0 15 16 2.1 2.5e+03 -0.9 2.4 1 21 683 703 683 705 0.90 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF235-201 - 738 2.2e-08 34.2 114.0 16 16 0.0041 4.9 7.7 2.3 1 20 711 730 711 733 0.91 Zinc-finger of C2H2 type XPA_N PF01286.18 32 ZNF235-201 - 738 9.1e-07 28.8 77.6 1 16 0.52 6.2e+02 0.6 0.3 6 14 267 275 266 276 0.92 XPA protein N-terminal XPA_N PF01286.18 32 ZNF235-201 - 738 9.1e-07 28.8 77.6 2 16 0.011 13 6.0 0.2 4 14 321 331 319 337 0.89 XPA protein N-terminal XPA_N PF01286.18 32 ZNF235-201 - 738 9.1e-07 28.8 77.6 3 16 0.0029 3.5 7.7 0.1 3 14 348 359 346 364 0.90 XPA protein N-terminal XPA_N PF01286.18 32 ZNF235-201 - 738 9.1e-07 28.8 77.6 4 16 0.019 23 5.2 0.1 3 14 376 387 374 388 0.89 XPA protein N-terminal XPA_N PF01286.18 32 ZNF235-201 - 738 9.1e-07 28.8 77.6 5 16 0.12 1.5e+02 2.5 0.1 3 12 404 413 402 419 0.87 XPA protein N-terminal XPA_N PF01286.18 32 ZNF235-201 - 738 9.1e-07 28.8 77.6 6 16 0.097 1.2e+02 2.9 0.6 3 14 432 443 430 448 0.87 XPA protein N-terminal XPA_N PF01286.18 32 ZNF235-201 - 738 9.1e-07 28.8 77.6 7 16 0.0057 6.8 6.8 1.8 3 15 460 472 458 476 0.90 XPA protein N-terminal XPA_N PF01286.18 32 ZNF235-201 - 738 9.1e-07 28.8 77.6 8 16 0.0058 6.9 6.8 0.2 3 12 488 497 486 500 0.87 XPA protein N-terminal XPA_N PF01286.18 32 ZNF235-201 - 738 9.1e-07 28.8 77.6 9 16 0.015 18 5.5 0.1 3 18 516 531 514 533 0.89 XPA protein N-terminal XPA_N PF01286.18 32 ZNF235-201 - 738 9.1e-07 28.8 77.6 10 16 0.069 82 3.4 0.0 3 14 544 555 542 560 0.86 XPA protein N-terminal XPA_N PF01286.18 32 ZNF235-201 - 738 9.1e-07 28.8 77.6 11 16 0.0042 5 7.2 0.2 3 13 572 582 570 586 0.88 XPA protein N-terminal XPA_N PF01286.18 32 ZNF235-201 - 738 9.1e-07 28.8 77.6 12 16 0.031 38 4.5 0.2 3 13 600 610 598 616 0.87 XPA protein N-terminal XPA_N PF01286.18 32 ZNF235-201 - 738 9.1e-07 28.8 77.6 13 16 0.03 36 4.5 0.1 3 12 628 637 626 640 0.89 XPA protein N-terminal XPA_N PF01286.18 32 ZNF235-201 - 738 9.1e-07 28.8 77.6 14 16 0.0022 2.6 8.2 0.6 3 14 656 667 654 668 0.87 XPA protein N-terminal XPA_N PF01286.18 32 ZNF235-201 - 738 9.1e-07 28.8 77.6 15 16 0.026 31 4.7 0.1 3 13 684 694 682 700 0.87 XPA protein N-terminal XPA_N PF01286.18 32 ZNF235-201 - 738 9.1e-07 28.8 77.6 16 16 3.2 3.9e+03 -2.0 1.3 24 28 712 716 711 722 0.66 XPA protein N-terminal # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF235-201.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF235-201.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF235-201.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF235-201.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF235-201.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:02:13 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZNF235-202 - 652 1.7e-117 379.1 127.1 1 19 5 6e+03 -2.0 0.0 2 10 72 80 72 89 0.78 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF235-202 - 652 1.7e-117 379.1 127.1 2 19 0.041 48 4.6 0.0 8 24 170 186 167 187 0.77 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF235-202 - 652 1.7e-117 379.1 127.1 3 19 0.35 4.2e+02 1.6 0.4 2 13 192 203 191 210 0.81 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF235-202 - 652 1.7e-117 379.1 127.1 4 19 0.0033 4 8.0 0.2 10 25 228 243 224 244 0.90 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF235-202 - 652 1.7e-117 379.1 127.1 5 19 5e-12 6e-09 35.9 1.4 1 25 247 271 247 272 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF235-202 - 652 1.7e-117 379.1 127.1 6 19 6e-09 7.1e-06 26.2 0.8 1 25 275 299 275 300 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF235-202 - 652 1.7e-117 379.1 127.1 7 19 1.1e-11 1.3e-08 34.9 0.8 1 25 303 327 303 328 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF235-202 - 652 1.7e-117 379.1 127.1 8 19 2.9e-10 3.4e-07 30.4 2.6 1 25 331 355 331 356 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF235-202 - 652 1.7e-117 379.1 127.1 9 19 2.4e-08 2.9e-05 24.3 4.8 3 25 361 383 359 383 0.90 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF235-202 - 652 1.7e-117 379.1 127.1 10 19 4.5e-11 5.4e-08 32.9 1.5 2 26 388 412 387 412 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF235-202 - 652 1.7e-117 379.1 127.1 11 19 1.2e-10 1.5e-07 31.5 0.4 2 25 416 439 415 440 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF235-202 - 652 1.7e-117 379.1 127.1 12 19 2.7e-11 3.3e-08 33.6 1.4 2 25 444 467 443 467 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF235-202 - 652 1.7e-117 379.1 127.1 13 19 6e-11 7.1e-08 32.5 1.4 2 25 472 495 471 496 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF235-202 - 652 1.7e-117 379.1 127.1 14 19 4e-11 4.7e-08 33.1 0.3 1 25 499 523 499 524 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF235-202 - 652 1.7e-117 379.1 127.1 15 19 1.9e-12 2.3e-09 37.3 0.8 1 25 527 551 527 552 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF235-202 - 652 1.7e-117 379.1 127.1 16 19 1.8e-10 2.2e-07 31.0 0.2 1 25 555 579 555 579 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF235-202 - 652 1.7e-117 379.1 127.1 17 19 1e-11 1.2e-08 35.0 0.1 1 25 583 607 583 608 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF235-202 - 652 1.7e-117 379.1 127.1 18 19 1.6e-06 0.0019 18.5 4.8 5 25 615 635 611 636 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF235-202 - 652 1.7e-117 379.1 127.1 19 19 0.028 34 5.1 0.5 1 11 639 649 639 651 0.88 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZNF235-202 - 652 1.2e-81 264.9 127.0 1 16 0.00072 0.86 10.2 0.0 5 23 181 199 179 199 0.95 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF235-202 - 652 1.2e-81 264.9 127.0 2 16 7e-09 8.4e-06 26.0 1.3 3 23 235 255 233 255 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF235-202 - 652 1.2e-81 264.9 127.0 3 16 5.2e-08 6.2e-05 23.2 2.4 1 20 261 280 261 283 0.94 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF235-202 - 652 1.2e-81 264.9 127.0 4 16 5.8e-06 0.0069 16.8 2.1 1 23 289 311 289 311 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF235-202 - 652 1.2e-81 264.9 127.0 5 16 5.5e-09 6.6e-06 26.3 0.9 1 23 317 339 317 339 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF235-202 - 652 1.2e-81 264.9 127.0 6 16 9.5e-07 0.0011 19.3 5.3 1 23 345 367 345 367 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF235-202 - 652 1.2e-81 264.9 127.0 7 16 5.7e-07 0.00068 20.0 5.2 1 23 373 395 373 395 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF235-202 - 652 1.2e-81 264.9 127.0 8 16 6.5e-09 7.7e-06 26.1 0.5 1 23 401 423 401 423 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF235-202 - 652 1.2e-81 264.9 127.0 9 16 1.4e-08 1.6e-05 25.1 0.9 1 23 429 451 429 451 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF235-202 - 652 1.2e-81 264.9 127.0 10 16 1e-05 0.012 16.0 1.7 1 23 457 479 457 479 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF235-202 - 652 1.2e-81 264.9 127.0 11 16 2.7e-09 3.2e-06 27.3 0.1 1 23 485 507 485 507 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF235-202 - 652 1.2e-81 264.9 127.0 12 16 5.1e-08 6.1e-05 23.2 1.7 1 23 513 535 513 535 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF235-202 - 652 1.2e-81 264.9 127.0 13 16 2e-09 2.4e-06 27.7 0.3 1 23 541 563 541 563 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF235-202 - 652 1.2e-81 264.9 127.0 14 16 7e-06 0.0083 16.5 0.1 1 23 569 591 569 591 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF235-202 - 652 1.2e-81 264.9 127.0 15 16 3.5e-07 0.00042 20.6 4.5 1 23 597 619 597 619 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF235-202 - 652 1.2e-81 264.9 127.0 16 16 5.3e-05 0.063 13.8 3.8 1 23 625 647 625 647 0.97 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZNF235-202 - 652 4.8e-45 148.3 129.4 1 16 0.14 1.7e+02 3.5 0.0 4 23 180 199 177 200 0.85 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF235-202 - 652 4.8e-45 148.3 129.4 2 16 8.7e-06 0.01 16.6 1.5 1 23 233 255 233 256 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF235-202 - 652 4.8e-45 148.3 129.4 3 16 8.6e-05 0.1 13.5 2.1 1 23 261 283 261 284 0.90 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF235-202 - 652 4.8e-45 148.3 129.4 4 16 2.3e-05 0.028 15.3 1.3 1 23 289 311 289 312 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF235-202 - 652 4.8e-45 148.3 129.4 5 16 2.7e-06 0.0032 18.2 0.9 1 23 317 339 317 340 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF235-202 - 652 4.8e-45 148.3 129.4 6 16 1.3e-05 0.016 16.0 4.2 1 23 345 367 345 368 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF235-202 - 652 4.8e-45 148.3 129.4 7 16 0.00064 0.77 10.8 4.7 1 23 373 395 373 396 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF235-202 - 652 4.8e-45 148.3 129.4 8 16 1.9e-06 0.0023 18.6 0.8 1 23 401 423 401 424 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF235-202 - 652 4.8e-45 148.3 129.4 9 16 2e-05 0.023 15.5 1.0 1 23 429 451 429 452 0.91 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF235-202 - 652 4.8e-45 148.3 129.4 10 16 0.00016 0.19 12.7 1.6 1 23 457 479 457 480 0.89 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF235-202 - 652 4.8e-45 148.3 129.4 11 16 1.2e-05 0.015 16.1 0.2 1 23 485 507 485 508 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF235-202 - 652 4.8e-45 148.3 129.4 12 16 2.7e-05 0.032 15.0 1.9 1 23 513 535 513 536 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF235-202 - 652 4.8e-45 148.3 129.4 13 16 4e-05 0.048 14.5 0.3 1 23 541 563 541 564 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF235-202 - 652 4.8e-45 148.3 129.4 14 16 3.9e-05 0.047 14.5 0.2 1 23 569 591 569 592 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF235-202 - 652 4.8e-45 148.3 129.4 15 16 0.00016 0.19 12.7 3.6 1 23 597 619 597 620 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF235-202 - 652 4.8e-45 148.3 129.4 16 16 0.00012 0.15 13.0 3.2 1 23 625 647 625 648 0.94 C2H2-type zinc finger zf-C2H2_jaz PF12171.8 27 ZNF235-202 - 652 7.3e-20 70.8 80.5 1 17 5.3 6.3e+03 -2.3 0.0 18 24 23 29 21 30 0.82 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF235-202 - 652 7.3e-20 70.8 80.5 2 17 0.46 5.5e+02 1.0 0.1 7 21 182 196 181 197 0.90 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF235-202 - 652 7.3e-20 70.8 80.5 3 17 0.00018 0.22 11.9 0.3 2 22 233 253 232 253 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF235-202 - 652 7.3e-20 70.8 80.5 4 17 0.06 72 3.8 0.5 2 17 261 276 260 280 0.78 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF235-202 - 652 7.3e-20 70.8 80.5 5 17 0.0064 7.7 6.9 0.0 2 22 289 309 288 309 0.91 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF235-202 - 652 7.3e-20 70.8 80.5 6 17 0.00059 0.71 10.2 0.0 2 22 317 337 316 337 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF235-202 - 652 7.3e-20 70.8 80.5 7 17 0.2 2.4e+02 2.2 0.5 2 22 345 365 344 365 0.90 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF235-202 - 652 7.3e-20 70.8 80.5 8 17 2.7 3.3e+03 -1.4 1.4 2 12 373 383 372 393 0.74 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF235-202 - 652 7.3e-20 70.8 80.5 9 17 9.5e-07 0.0011 19.2 0.1 2 22 401 421 400 421 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF235-202 - 652 7.3e-20 70.8 80.5 10 17 0.00057 0.68 10.3 0.1 2 22 429 449 428 449 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF235-202 - 652 7.3e-20 70.8 80.5 11 17 0.0021 2.6 8.5 0.4 2 22 457 477 456 477 0.91 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF235-202 - 652 7.3e-20 70.8 80.5 12 17 6.2e-05 0.075 13.4 0.1 2 21 485 504 484 505 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF235-202 - 652 7.3e-20 70.8 80.5 13 17 4.7e-05 0.056 13.7 0.7 2 22 513 533 512 533 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF235-202 - 652 7.3e-20 70.8 80.5 14 17 0.0063 7.5 7.0 0.1 2 21 541 560 540 561 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF235-202 - 652 7.3e-20 70.8 80.5 15 17 0.011 13 6.2 0.0 2 12 569 579 568 589 0.78 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF235-202 - 652 7.3e-20 70.8 80.5 16 17 0.0034 4.1 7.8 0.6 2 22 597 617 596 617 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF235-202 - 652 7.3e-20 70.8 80.5 17 17 1 1.2e+03 -0.1 1.2 2 20 625 643 624 645 0.75 Zinc-finger double-stranded RNA-binding zf_UBZ PF18439.1 32 ZNF235-202 - 652 3.9e-13 48.8 73.0 1 15 0.0031 3.8 7.2 0.2 3 21 233 252 231 252 0.92 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF235-202 - 652 3.9e-13 48.8 73.0 2 15 0.0032 3.8 7.2 0.1 3 15 261 273 259 279 0.86 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF235-202 - 652 3.9e-13 48.8 73.0 3 15 0.033 40 3.9 0.1 3 16 289 303 287 307 0.80 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF235-202 - 652 3.9e-13 48.8 73.0 4 15 0.082 98 2.7 0.2 3 20 317 335 315 336 0.80 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF235-202 - 652 3.9e-13 48.8 73.0 5 15 0.0027 3.2 7.4 0.7 3 21 345 364 343 364 0.86 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF235-202 - 652 3.9e-13 48.8 73.0 6 15 0.00039 0.47 10.1 1.2 3 21 373 392 371 392 0.91 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF235-202 - 652 3.9e-13 48.8 73.0 7 15 4.9e-05 0.059 13.0 0.2 3 21 401 420 399 420 0.94 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF235-202 - 652 3.9e-13 48.8 73.0 8 15 0.23 2.7e+02 1.2 0.0 3 21 429 448 427 448 0.83 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF235-202 - 652 3.9e-13 48.8 73.0 9 15 0.05 60 3.4 0.1 3 13 457 467 455 476 0.81 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF235-202 - 652 3.9e-13 48.8 73.0 10 15 0.00031 0.37 10.4 0.1 3 21 485 504 483 504 0.92 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF235-202 - 652 3.9e-13 48.8 73.0 11 15 0.0035 4.2 7.0 0.4 3 21 513 532 511 532 0.89 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF235-202 - 652 3.9e-13 48.8 73.0 12 15 0.0041 4.9 6.8 0.1 3 20 541 559 539 560 0.81 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF235-202 - 652 3.9e-13 48.8 73.0 13 15 0.0023 2.7 7.7 0.1 3 13 569 579 567 588 0.82 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF235-202 - 652 3.9e-13 48.8 73.0 14 15 0.0017 2.1 8.0 0.4 3 17 597 612 595 616 0.78 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF235-202 - 652 3.9e-13 48.8 73.0 15 15 5.5 6.6e+03 -3.2 1.0 3 13 625 635 624 639 0.80 Ubiquitin-Binding Zinc Finger Zn-ribbon_8 PF09723.10 40 ZNF235-202 - 652 1.9e-12 47.1 86.9 1 14 6.2 7.4e+03 -2.8 0.0 6 16 177 187 176 198 0.76 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF235-202 - 652 1.9e-12 47.1 86.9 2 14 0.00042 0.5 10.5 3.5 6 34 233 268 232 272 0.87 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF235-202 - 652 1.9e-12 47.1 86.9 3 14 0.0097 12 6.2 0.5 6 16 261 271 260 278 0.86 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF235-202 - 652 1.9e-12 47.1 86.9 4 14 0.00048 0.58 10.3 4.9 6 35 289 326 288 330 0.85 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF235-202 - 652 1.9e-12 47.1 86.9 5 14 0.0058 6.9 6.9 0.4 6 19 317 330 316 338 0.78 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF235-202 - 652 1.9e-12 47.1 86.9 6 14 0.00059 0.7 10.1 8.4 6 34 345 380 344 383 0.89 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF235-202 - 652 1.9e-12 47.1 86.9 7 14 0.00055 0.66 10.2 4.0 6 34 401 436 400 440 0.86 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF235-202 - 652 1.9e-12 47.1 86.9 8 14 0.0003 0.36 11.0 2.6 6 34 429 464 428 467 0.91 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF235-202 - 652 1.9e-12 47.1 86.9 9 14 4.7e-05 0.056 13.6 3.8 6 34 457 492 455 497 0.91 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF235-202 - 652 1.9e-12 47.1 86.9 10 14 0.0017 2 8.6 4.9 6 33 485 519 484 520 0.89 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF235-202 - 652 1.9e-12 47.1 86.9 11 14 0.00013 0.15 12.2 3.3 6 36 513 550 511 554 0.88 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF235-202 - 652 1.9e-12 47.1 86.9 12 14 0.0051 6.1 7.1 0.2 6 18 541 553 540 565 0.84 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF235-202 - 652 1.9e-12 47.1 86.9 13 14 1.2e-05 0.014 15.5 3.3 6 34 569 604 567 608 0.91 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF235-202 - 652 1.9e-12 47.1 86.9 14 14 0.006 7.1 6.8 3.0 6 32 597 630 596 638 0.82 Zinc ribbon domain zf-met PF12874.7 25 ZNF235-202 - 652 2.8e-09 37.1 114.0 1 16 4.2 5.1e+03 -1.9 0.1 7 21 183 197 182 198 0.81 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF235-202 - 652 2.8e-09 37.1 114.0 2 16 0.014 16 6.0 1.5 1 21 233 253 233 256 0.94 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF235-202 - 652 2.8e-09 37.1 114.0 3 16 0.036 43 4.7 2.5 1 20 261 280 261 280 0.96 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF235-202 - 652 2.8e-09 37.1 114.0 4 16 0.0049 5.8 7.4 0.6 1 21 289 309 289 312 0.93 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF235-202 - 652 2.8e-09 37.1 114.0 5 16 4.3e-06 0.0051 17.1 0.4 1 22 317 338 317 340 0.92 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF235-202 - 652 2.8e-09 37.1 114.0 6 16 0.023 28 5.3 2.4 1 21 345 365 345 367 0.92 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF235-202 - 652 2.8e-09 37.1 114.0 7 16 7 8.4e+03 -2.6 1.8 1 19 373 391 373 393 0.72 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF235-202 - 652 2.8e-09 37.1 114.0 8 16 1.6e-05 0.019 15.4 0.8 1 21 401 421 401 424 0.93 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF235-202 - 652 2.8e-09 37.1 114.0 9 16 0.00063 0.75 10.3 0.7 1 21 429 449 429 452 0.93 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF235-202 - 652 2.8e-09 37.1 114.0 10 16 0.0041 4.9 7.7 0.4 1 11 457 467 457 478 0.81 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF235-202 - 652 2.8e-09 37.1 114.0 11 16 0.0033 4 8.0 0.6 1 20 485 504 485 507 0.93 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF235-202 - 652 2.8e-09 37.1 114.0 12 16 2.5e-05 0.03 14.7 1.4 1 21 513 533 513 536 0.93 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF235-202 - 652 2.8e-09 37.1 114.0 13 16 0.011 13 6.3 0.3 1 19 541 559 541 561 0.94 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF235-202 - 652 2.8e-09 37.1 114.0 14 16 0.82 9.8e+02 0.4 0.1 1 11 569 579 569 589 0.79 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF235-202 - 652 2.8e-09 37.1 114.0 15 16 1.8 2.1e+03 -0.7 2.4 1 21 597 617 597 619 0.90 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF235-202 - 652 2.8e-09 37.1 114.0 16 16 0.0036 4.3 7.9 2.3 1 20 625 644 625 647 0.91 Zinc-finger of C2H2 type zf-C2H2_6 PF13912.6 27 ZNF235-202 - 652 1.1e-07 31.7 110.6 1 16 6.3 7.5e+03 -2.9 0.1 6 21 181 196 180 200 0.70 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF235-202 - 652 1.1e-07 31.7 110.6 2 16 0.0046 5.6 7.1 1.7 2 24 233 255 232 258 0.85 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF235-202 - 652 1.1e-07 31.7 110.6 3 16 0.00084 1 9.5 0.7 2 12 261 271 261 280 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF235-202 - 652 1.1e-07 31.7 110.6 4 16 0.00038 0.46 10.5 0.9 2 20 289 307 289 313 0.89 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF235-202 - 652 1.1e-07 31.7 110.6 5 16 0.012 14 5.8 0.3 2 12 317 327 317 337 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF235-202 - 652 1.1e-07 31.7 110.6 6 16 0.66 7.9e+02 0.2 3.9 2 24 345 367 345 370 0.81 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF235-202 - 652 1.1e-07 31.7 110.6 7 16 0.015 18 5.5 2.7 2 12 373 383 373 395 0.90 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF235-202 - 652 1.1e-07 31.7 110.6 8 16 0.0032 3.8 7.6 1.6 2 13 401 412 401 423 0.88 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF235-202 - 652 1.1e-07 31.7 110.6 9 16 0.0035 4.2 7.5 0.5 2 12 429 439 429 440 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF235-202 - 652 1.1e-07 31.7 110.6 10 16 0.0018 2.2 8.4 0.2 2 12 457 467 457 475 0.95 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF235-202 - 652 1.1e-07 31.7 110.6 11 16 0.0038 4.5 7.4 0.9 2 20 485 503 485 509 0.83 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF235-202 - 652 1.1e-07 31.7 110.6 12 16 0.024 28 4.8 0.7 2 12 513 523 513 535 0.87 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF235-202 - 652 1.1e-07 31.7 110.6 13 16 0.00077 0.93 9.6 0.3 2 12 541 551 541 559 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF235-202 - 652 1.1e-07 31.7 110.6 14 16 0.0029 3.5 7.7 0.3 2 12 569 579 569 591 0.91 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF235-202 - 652 1.1e-07 31.7 110.6 15 16 0.0083 10 6.3 0.4 2 12 597 607 597 608 0.92 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF235-202 - 652 1.1e-07 31.7 110.6 16 16 0.077 92 3.2 1.4 2 12 625 635 625 643 0.93 C2H2-type zinc finger XPA_N PF01286.18 32 ZNF235-202 - 652 1.2e-07 31.7 77.6 1 16 0.45 5.4e+02 0.7 0.3 6 14 181 189 180 190 0.92 XPA protein N-terminal XPA_N PF01286.18 32 ZNF235-202 - 652 1.2e-07 31.7 77.6 2 16 0.0092 11 6.2 0.2 4 14 235 245 233 251 0.89 XPA protein N-terminal XPA_N PF01286.18 32 ZNF235-202 - 652 1.2e-07 31.7 77.6 3 16 0.0026 3.1 7.9 0.1 3 14 262 273 260 278 0.90 XPA protein N-terminal XPA_N PF01286.18 32 ZNF235-202 - 652 1.2e-07 31.7 77.6 4 16 0.017 20 5.3 0.1 3 14 290 301 288 302 0.89 XPA protein N-terminal XPA_N PF01286.18 32 ZNF235-202 - 652 1.2e-07 31.7 77.6 5 16 0.11 1.3e+02 2.7 0.1 3 12 318 327 316 333 0.87 XPA protein N-terminal XPA_N PF01286.18 32 ZNF235-202 - 652 1.2e-07 31.7 77.6 6 16 0.084 1e+02 3.1 0.6 3 14 346 357 344 362 0.87 XPA protein N-terminal XPA_N PF01286.18 32 ZNF235-202 - 652 1.2e-07 31.7 77.6 7 16 0.005 6 7.0 1.8 3 15 374 386 372 390 0.90 XPA protein N-terminal XPA_N PF01286.18 32 ZNF235-202 - 652 1.2e-07 31.7 77.6 8 16 0.005 6 7.0 0.2 3 12 402 411 400 414 0.87 XPA protein N-terminal XPA_N PF01286.18 32 ZNF235-202 - 652 1.2e-07 31.7 77.6 9 16 0.013 16 5.7 0.1 3 18 430 445 428 447 0.89 XPA protein N-terminal XPA_N PF01286.18 32 ZNF235-202 - 652 1.2e-07 31.7 77.6 10 16 0.06 72 3.6 0.0 3 14 458 469 456 474 0.86 XPA protein N-terminal XPA_N PF01286.18 32 ZNF235-202 - 652 1.2e-07 31.7 77.6 11 16 0.0037 4.4 7.4 0.2 3 13 486 496 484 500 0.88 XPA protein N-terminal XPA_N PF01286.18 32 ZNF235-202 - 652 1.2e-07 31.7 77.6 12 16 0.027 33 4.6 0.2 3 13 514 524 512 530 0.87 XPA protein N-terminal XPA_N PF01286.18 32 ZNF235-202 - 652 1.2e-07 31.7 77.6 13 16 0.026 31 4.7 0.1 3 12 542 551 540 554 0.89 XPA protein N-terminal XPA_N PF01286.18 32 ZNF235-202 - 652 1.2e-07 31.7 77.6 14 16 0.0019 2.3 8.3 0.6 3 14 570 581 568 582 0.87 XPA protein N-terminal XPA_N PF01286.18 32 ZNF235-202 - 652 1.2e-07 31.7 77.6 15 16 0.023 27 4.9 0.1 3 13 598 608 596 614 0.87 XPA protein N-terminal XPA_N PF01286.18 32 ZNF235-202 - 652 1.2e-07 31.7 77.6 16 16 2.8 3.4e+03 -1.8 1.3 24 28 626 630 625 636 0.66 XPA protein N-terminal # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF235-202.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF235-202.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF235-202.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF235-202.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF235-202.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:02:13 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- KRAB PF01352.27 42 ZNF235-203 - 87 6.9e-25 86.4 0.1 1 1 6.3e-29 1.1e-24 85.7 0.1 2 42 8 48 7 48 0.98 KRAB box # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF235-203.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF235-203.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF235-203.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF235-203.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF235-203.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:02:14 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF235-204.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF235-204.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF235-204.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF235-204.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF235-204.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:02:14 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF235-205.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF235-205.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF235-205.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF235-205.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF235-205.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:02:14 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- KRAB PF01352.27 42 ZNF235-206 - 81 5.7e-25 86.7 0.1 1 1 5.3e-29 9.4e-25 86.0 0.1 2 42 8 48 7 48 0.98 KRAB box # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF235-206.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF235-206.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF235-206.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF235-206.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF235-206.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:02:15 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZNF235-207 - 734 2.1e-116 375.7 127.1 1 19 5.7 6.8e+03 -2.2 0.0 2 10 154 162 154 171 0.78 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF235-207 - 734 2.1e-116 375.7 127.1 2 19 0.046 55 4.4 0.0 8 24 252 268 249 269 0.77 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF235-207 - 734 2.1e-116 375.7 127.1 3 19 0.4 4.8e+02 1.5 0.4 2 13 274 285 273 292 0.81 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF235-207 - 734 2.1e-116 375.7 127.1 4 19 0.0038 4.5 7.9 0.2 10 25 310 325 306 326 0.90 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF235-207 - 734 2.1e-116 375.7 127.1 5 19 5.8e-12 6.9e-09 35.7 1.4 1 25 329 353 329 354 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF235-207 - 734 2.1e-116 375.7 127.1 6 19 6.9e-09 8.2e-06 26.0 0.8 1 25 357 381 357 382 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF235-207 - 734 2.1e-116 375.7 127.1 7 19 1.2e-11 1.5e-08 34.7 0.8 1 25 385 409 385 410 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF235-207 - 734 2.1e-116 375.7 127.1 8 19 3.3e-10 3.9e-07 30.2 2.6 1 25 413 437 413 438 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF235-207 - 734 2.1e-116 375.7 127.1 9 19 2.8e-08 3.4e-05 24.1 4.8 3 25 443 465 441 465 0.90 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF235-207 - 734 2.1e-116 375.7 127.1 10 19 5.2e-11 6.2e-08 32.7 1.5 2 26 470 494 469 494 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF235-207 - 734 2.1e-116 375.7 127.1 11 19 1.4e-10 1.7e-07 31.3 0.4 2 25 498 521 497 522 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF235-207 - 734 2.1e-116 375.7 127.1 12 19 3.1e-11 3.8e-08 33.4 1.4 2 25 526 549 525 549 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF235-207 - 734 2.1e-116 375.7 127.1 13 19 6.9e-11 8.2e-08 32.3 1.4 2 25 554 577 553 578 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF235-207 - 734 2.1e-116 375.7 127.1 14 19 4.6e-11 5.5e-08 32.9 0.3 1 25 581 605 581 606 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF235-207 - 734 2.1e-116 375.7 127.1 15 19 2.2e-12 2.6e-09 37.1 0.8 1 25 609 633 609 634 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF235-207 - 734 2.1e-116 375.7 127.1 16 19 2.1e-10 2.5e-07 30.8 0.2 1 25 637 661 637 661 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF235-207 - 734 2.1e-116 375.7 127.1 17 19 1.2e-11 1.4e-08 34.8 0.1 1 25 665 689 665 690 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF235-207 - 734 2.1e-116 375.7 127.1 18 19 1.9e-06 0.0022 18.3 4.8 5 25 697 717 693 718 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF235-207 - 734 2.1e-116 375.7 127.1 19 19 0.032 38 4.9 0.5 1 11 721 731 721 733 0.88 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZNF235-207 - 734 1e-80 261.9 127.0 1 16 0.00082 0.98 10.0 0.0 5 23 263 281 261 281 0.95 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF235-207 - 734 1e-80 261.9 127.0 2 16 8e-09 9.6e-06 25.8 1.3 3 23 317 337 315 337 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF235-207 - 734 1e-80 261.9 127.0 3 16 5.9e-08 7.1e-05 23.1 2.4 1 20 343 362 343 365 0.94 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF235-207 - 734 1e-80 261.9 127.0 4 16 6.6e-06 0.0079 16.6 2.1 1 23 371 393 371 393 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF235-207 - 734 1e-80 261.9 127.0 5 16 6.4e-09 7.6e-06 26.1 0.9 1 23 399 421 399 421 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF235-207 - 734 1e-80 261.9 127.0 6 16 1.1e-06 0.0013 19.1 5.3 1 23 427 449 427 449 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF235-207 - 734 1e-80 261.9 127.0 7 16 6.6e-07 0.00078 19.8 5.2 1 23 455 477 455 477 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF235-207 - 734 1e-80 261.9 127.0 8 16 7.4e-09 8.9e-06 25.9 0.5 1 23 483 505 483 505 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF235-207 - 734 1e-80 261.9 127.0 9 16 1.6e-08 1.9e-05 24.9 0.9 1 23 511 533 511 533 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF235-207 - 734 1e-80 261.9 127.0 10 16 1.2e-05 0.014 15.8 1.7 1 23 539 561 539 561 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF235-207 - 734 1e-80 261.9 127.0 11 16 3.1e-09 3.7e-06 27.1 0.1 1 23 567 589 567 589 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF235-207 - 734 1e-80 261.9 127.0 12 16 5.9e-08 7e-05 23.1 1.7 1 23 595 617 595 617 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF235-207 - 734 1e-80 261.9 127.0 13 16 2.3e-09 2.7e-06 27.5 0.3 1 23 623 645 623 645 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF235-207 - 734 1e-80 261.9 127.0 14 16 8e-06 0.0095 16.3 0.1 1 23 651 673 651 673 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF235-207 - 734 1e-80 261.9 127.0 15 16 4.1e-07 0.00049 20.4 4.5 1 23 679 701 679 701 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF235-207 - 734 1e-80 261.9 127.0 16 16 6.1e-05 0.073 13.6 3.8 1 23 707 729 707 729 0.97 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZNF235-207 - 734 4.5e-44 145.3 129.4 1 16 0.16 1.9e+02 3.3 0.0 4 23 262 281 259 282 0.85 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF235-207 - 734 4.5e-44 145.3 129.4 2 16 1e-05 0.012 16.4 1.5 1 23 315 337 315 338 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF235-207 - 734 4.5e-44 145.3 129.4 3 16 9.9e-05 0.12 13.3 2.1 1 23 343 365 343 366 0.90 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF235-207 - 734 4.5e-44 145.3 129.4 4 16 2.7e-05 0.032 15.1 1.3 1 23 371 393 371 394 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF235-207 - 734 4.5e-44 145.3 129.4 5 16 3.1e-06 0.0037 18.0 0.9 1 23 399 421 399 422 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF235-207 - 734 4.5e-44 145.3 129.4 6 16 1.5e-05 0.018 15.8 4.2 1 23 427 449 427 450 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF235-207 - 734 4.5e-44 145.3 129.4 7 16 0.00074 0.89 10.6 4.7 1 23 455 477 455 478 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF235-207 - 734 4.5e-44 145.3 129.4 8 16 2.2e-06 0.0026 18.4 0.8 1 23 483 505 483 506 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF235-207 - 734 4.5e-44 145.3 129.4 9 16 2.3e-05 0.027 15.3 1.0 1 23 511 533 511 534 0.91 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF235-207 - 734 4.5e-44 145.3 129.4 10 16 0.00018 0.22 12.5 1.6 1 23 539 561 539 562 0.89 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF235-207 - 734 4.5e-44 145.3 129.4 11 16 1.4e-05 0.017 15.9 0.2 1 23 567 589 567 590 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF235-207 - 734 4.5e-44 145.3 129.4 12 16 3.1e-05 0.037 14.9 1.9 1 23 595 617 595 618 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF235-207 - 734 4.5e-44 145.3 129.4 13 16 4.6e-05 0.055 14.3 0.3 1 23 623 645 623 646 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF235-207 - 734 4.5e-44 145.3 129.4 14 16 4.5e-05 0.054 14.4 0.2 1 23 651 673 651 674 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF235-207 - 734 4.5e-44 145.3 129.4 15 16 0.00018 0.22 12.5 3.6 1 23 679 701 679 702 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF235-207 - 734 4.5e-44 145.3 129.4 16 16 0.00014 0.17 12.8 3.2 1 23 707 729 707 730 0.94 C2H2-type zinc finger KRAB PF01352.27 42 ZNF235-207 - 734 1.9e-23 81.8 0.1 1 1 3.2e-26 3.8e-23 80.9 0.1 2 42 8 48 7 48 0.98 KRAB box zf-C2H2_jaz PF12171.8 27 ZNF235-207 - 734 5.7e-19 67.9 80.5 1 17 6 7.1e+03 -2.5 0.0 18 24 105 111 103 112 0.82 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF235-207 - 734 5.7e-19 67.9 80.5 2 17 0.52 6.2e+02 0.9 0.1 7 21 264 278 263 279 0.90 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF235-207 - 734 5.7e-19 67.9 80.5 3 17 0.00021 0.25 11.7 0.3 2 22 315 335 314 335 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF235-207 - 734 5.7e-19 67.9 80.5 4 17 0.069 82 3.7 0.5 2 17 343 358 342 362 0.78 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF235-207 - 734 5.7e-19 67.9 80.5 5 17 0.0073 8.8 6.8 0.0 2 22 371 391 370 391 0.91 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF235-207 - 734 5.7e-19 67.9 80.5 6 17 0.00068 0.81 10.1 0.0 2 22 399 419 398 419 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF235-207 - 734 5.7e-19 67.9 80.5 7 17 0.23 2.8e+02 2.0 0.5 2 22 427 447 426 447 0.90 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF235-207 - 734 5.7e-19 67.9 80.5 8 17 3.1 3.7e+03 -1.6 1.4 2 12 455 465 454 475 0.74 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF235-207 - 734 5.7e-19 67.9 80.5 9 17 1.1e-06 0.0013 19.0 0.1 2 22 483 503 482 503 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF235-207 - 734 5.7e-19 67.9 80.5 10 17 0.00065 0.78 10.1 0.1 2 22 511 531 510 531 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF235-207 - 734 5.7e-19 67.9 80.5 11 17 0.0025 2.9 8.3 0.4 2 22 539 559 538 559 0.91 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF235-207 - 734 5.7e-19 67.9 80.5 12 17 7.1e-05 0.085 13.2 0.1 2 21 567 586 566 587 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF235-207 - 734 5.7e-19 67.9 80.5 13 17 5.4e-05 0.065 13.5 0.7 2 22 595 615 594 615 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF235-207 - 734 5.7e-19 67.9 80.5 14 17 0.0072 8.6 6.8 0.1 2 21 623 642 622 643 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF235-207 - 734 5.7e-19 67.9 80.5 15 17 0.013 15 6.0 0.0 2 12 651 661 650 671 0.78 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF235-207 - 734 5.7e-19 67.9 80.5 16 17 0.0039 4.7 7.6 0.6 2 22 679 699 678 699 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF235-207 - 734 5.7e-19 67.9 80.5 17 17 1.2 1.4e+03 -0.3 1.2 2 20 707 725 706 727 0.75 Zinc-finger double-stranded RNA-binding zf_UBZ PF18439.1 32 ZNF235-207 - 734 2.9e-12 46.0 73.2 1 15 0.0036 4.3 7.0 0.2 3 21 315 334 313 334 0.92 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF235-207 - 734 2.9e-12 46.0 73.2 2 15 0.0036 4.3 7.0 0.1 3 15 343 355 341 361 0.86 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF235-207 - 734 2.9e-12 46.0 73.2 3 15 0.038 45 3.7 0.1 3 16 371 385 369 389 0.80 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF235-207 - 734 2.9e-12 46.0 73.2 4 15 0.094 1.1e+02 2.5 0.2 3 20 399 417 397 418 0.80 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF235-207 - 734 2.9e-12 46.0 73.2 5 15 0.0031 3.7 7.2 0.7 3 21 427 446 425 446 0.86 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF235-207 - 734 2.9e-12 46.0 73.2 6 15 0.00045 0.54 9.9 1.2 3 21 455 474 453 474 0.91 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF235-207 - 734 2.9e-12 46.0 73.2 7 15 5.6e-05 0.067 12.8 0.2 3 21 483 502 481 502 0.94 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF235-207 - 734 2.9e-12 46.0 73.2 8 15 0.26 3.1e+02 1.1 0.0 3 21 511 530 509 530 0.83 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF235-207 - 734 2.9e-12 46.0 73.2 9 15 0.057 69 3.2 0.1 3 13 539 549 537 558 0.81 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF235-207 - 734 2.9e-12 46.0 73.2 10 15 0.00036 0.43 10.2 0.1 3 21 567 586 565 586 0.92 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF235-207 - 734 2.9e-12 46.0 73.2 11 15 0.004 4.8 6.9 0.4 3 21 595 614 593 614 0.89 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF235-207 - 734 2.9e-12 46.0 73.2 12 15 0.0047 5.6 6.6 0.1 3 20 623 641 621 642 0.81 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF235-207 - 734 2.9e-12 46.0 73.2 13 15 0.0026 3.1 7.5 0.1 3 13 651 661 649 670 0.82 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF235-207 - 734 2.9e-12 46.0 73.2 14 15 0.002 2.4 7.8 0.4 3 17 679 694 677 698 0.78 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF235-207 - 734 2.9e-12 46.0 73.2 15 15 7.4 8.9e+03 -3.6 1.1 3 13 707 717 706 720 0.80 Ubiquitin-Binding Zinc Finger Zn-ribbon_8 PF09723.10 40 ZNF235-207 - 734 6.9e-12 45.3 86.7 1 14 7.4 8.8e+03 -3.1 0.0 6 16 259 269 258 279 0.76 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF235-207 - 734 6.9e-12 45.3 86.7 2 14 0.00031 0.37 10.9 2.9 6 34 315 350 314 354 0.87 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF235-207 - 734 6.9e-12 45.3 86.7 3 14 0.011 13 6.0 0.4 6 16 343 353 342 360 0.86 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF235-207 - 734 6.9e-12 45.3 86.7 4 14 0.0005 0.59 10.3 4.8 6 35 371 408 370 412 0.85 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF235-207 - 734 6.9e-12 45.3 86.7 5 14 0.0066 7.9 6.7 0.3 6 19 399 412 398 420 0.78 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF235-207 - 734 6.9e-12 45.3 86.7 6 14 0.00069 0.82 9.8 8.5 6 34 427 462 426 465 0.89 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF235-207 - 734 6.9e-12 45.3 86.7 7 14 0.0007 0.84 9.8 3.7 6 34 483 518 482 519 0.86 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF235-207 - 734 6.9e-12 45.3 86.7 8 14 0.00037 0.44 10.7 2.8 6 34 511 546 509 549 0.91 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF235-207 - 734 6.9e-12 45.3 86.7 9 14 4.9e-05 0.059 13.5 3.7 6 34 539 574 537 579 0.91 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF235-207 - 734 6.9e-12 45.3 86.7 10 14 0.001 1.2 9.3 4.9 6 34 567 602 566 605 0.89 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF235-207 - 734 6.9e-12 45.3 86.7 11 14 0.00015 0.18 12.0 3.4 6 36 595 632 594 636 0.88 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF235-207 - 734 6.9e-12 45.3 86.7 12 14 0.0061 7.3 6.8 0.2 6 18 623 635 621 644 0.84 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF235-207 - 734 6.9e-12 45.3 86.7 13 14 1.5e-05 0.018 15.1 3.5 6 34 651 686 650 691 0.91 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF235-207 - 734 6.9e-12 45.3 86.7 14 14 0.0075 9 6.5 3.1 6 32 679 712 677 719 0.82 Zinc ribbon domain zf-met PF12874.7 25 ZNF235-207 - 734 2e-08 34.4 114.0 1 16 4.8 5.8e+03 -2.1 0.1 7 21 265 279 264 280 0.81 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF235-207 - 734 2e-08 34.4 114.0 2 16 0.018 21 5.7 1.6 1 21 315 335 315 337 0.94 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF235-207 - 734 2e-08 34.4 114.0 3 16 0.041 49 4.5 2.5 1 20 343 362 343 362 0.96 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF235-207 - 734 2e-08 34.4 114.0 4 16 0.0056 6.7 7.3 0.6 1 21 371 391 371 394 0.93 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF235-207 - 734 2e-08 34.4 114.0 5 16 4.9e-06 0.0059 17.0 0.4 1 22 399 420 399 422 0.92 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF235-207 - 734 2e-08 34.4 114.0 6 16 0.027 32 5.1 2.4 1 21 427 447 427 449 0.92 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF235-207 - 734 2e-08 34.4 114.0 7 16 8 9.5e+03 -2.8 1.8 1 19 455 473 455 475 0.72 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF235-207 - 734 2e-08 34.4 114.0 8 16 1.9e-05 0.023 15.1 0.8 1 21 483 503 483 505 0.93 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF235-207 - 734 2e-08 34.4 114.0 9 16 0.00079 0.94 10.0 0.7 1 21 511 531 511 533 0.93 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF235-207 - 734 2e-08 34.4 114.0 10 16 0.0046 5.5 7.5 0.4 1 11 539 549 539 560 0.81 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF235-207 - 734 2e-08 34.4 114.0 11 16 0.0038 4.6 7.8 0.6 1 20 567 586 567 589 0.93 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF235-207 - 734 2e-08 34.4 114.0 12 16 3.4e-05 0.04 14.3 1.5 1 21 595 615 595 617 0.93 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF235-207 - 734 2e-08 34.4 114.0 13 16 0.012 15 6.2 0.3 1 19 623 641 623 643 0.94 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF235-207 - 734 2e-08 34.4 114.0 14 16 0.94 1.1e+03 0.2 0.1 1 11 651 661 651 671 0.79 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF235-207 - 734 2e-08 34.4 114.0 15 16 2.1 2.5e+03 -0.9 2.4 1 21 679 699 679 701 0.90 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF235-207 - 734 2e-08 34.4 114.0 16 16 0.0041 4.9 7.7 2.3 1 20 707 726 707 729 0.91 Zinc-finger of C2H2 type XPA_N PF01286.18 32 ZNF235-207 - 734 8.3e-07 28.9 77.6 1 16 0.51 6.2e+02 0.6 0.3 6 14 263 271 262 272 0.92 XPA protein N-terminal XPA_N PF01286.18 32 ZNF235-207 - 734 8.3e-07 28.9 77.6 2 16 0.011 13 6.0 0.2 4 14 317 327 315 333 0.89 XPA protein N-terminal XPA_N PF01286.18 32 ZNF235-207 - 734 8.3e-07 28.9 77.6 3 16 0.0029 3.5 7.8 0.1 3 14 344 355 342 360 0.90 XPA protein N-terminal XPA_N PF01286.18 32 ZNF235-207 - 734 8.3e-07 28.9 77.6 4 16 0.019 22 5.2 0.1 3 14 372 383 370 384 0.89 XPA protein N-terminal XPA_N PF01286.18 32 ZNF235-207 - 734 8.3e-07 28.9 77.6 5 16 0.12 1.5e+02 2.6 0.1 3 12 400 409 398 415 0.87 XPA protein N-terminal XPA_N PF01286.18 32 ZNF235-207 - 734 8.3e-07 28.9 77.6 6 16 0.096 1.1e+02 2.9 0.6 3 14 428 439 426 444 0.87 XPA protein N-terminal XPA_N PF01286.18 32 ZNF235-207 - 734 8.3e-07 28.9 77.6 7 16 0.0057 6.8 6.8 1.8 3 15 456 468 454 472 0.90 XPA protein N-terminal XPA_N PF01286.18 32 ZNF235-207 - 734 8.3e-07 28.9 77.6 8 16 0.0057 6.8 6.8 0.2 3 12 484 493 482 496 0.87 XPA protein N-terminal XPA_N PF01286.18 32 ZNF235-207 - 734 8.3e-07 28.9 77.6 9 16 0.015 18 5.5 0.1 3 18 512 527 510 529 0.89 XPA protein N-terminal XPA_N PF01286.18 32 ZNF235-207 - 734 8.3e-07 28.9 77.6 10 16 0.068 82 3.4 0.0 3 14 540 551 538 556 0.86 XPA protein N-terminal XPA_N PF01286.18 32 ZNF235-207 - 734 8.3e-07 28.9 77.6 11 16 0.0042 5 7.3 0.2 3 13 568 578 566 582 0.88 XPA protein N-terminal XPA_N PF01286.18 32 ZNF235-207 - 734 8.3e-07 28.9 77.6 12 16 0.031 37 4.5 0.2 3 13 596 606 594 612 0.87 XPA protein N-terminal XPA_N PF01286.18 32 ZNF235-207 - 734 8.3e-07 28.9 77.6 13 16 0.03 36 4.5 0.1 3 12 624 633 622 636 0.89 XPA protein N-terminal XPA_N PF01286.18 32 ZNF235-207 - 734 8.3e-07 28.9 77.6 14 16 0.0022 2.6 8.2 0.6 3 14 652 663 650 664 0.87 XPA protein N-terminal XPA_N PF01286.18 32 ZNF235-207 - 734 8.3e-07 28.9 77.6 15 16 0.026 31 4.7 0.1 3 13 680 690 678 696 0.87 XPA protein N-terminal XPA_N PF01286.18 32 ZNF235-207 - 734 8.3e-07 28.9 77.6 16 16 3.2 3.8e+03 -2.0 1.3 24 28 708 712 707 718 0.66 XPA protein N-terminal zf-C2H2_6 PF13912.6 27 ZNF235-207 - 734 1e-06 28.6 110.8 1 16 7.2 8.6e+03 -3.1 0.1 6 21 263 278 262 282 0.70 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF235-207 - 734 1e-06 28.6 110.8 2 16 0.0053 6.4 6.9 1.7 2 24 315 337 314 340 0.85 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF235-207 - 734 1e-06 28.6 110.8 3 16 0.00096 1.1 9.3 0.7 2 12 343 353 343 362 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF235-207 - 734 1e-06 28.6 110.8 4 16 0.00044 0.53 10.4 0.9 2 20 371 389 371 395 0.89 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF235-207 - 734 1e-06 28.6 110.8 5 16 0.014 17 5.5 0.3 2 11 399 408 399 418 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF235-207 - 734 1e-06 28.6 110.8 6 16 0.75 9e+02 0.1 3.9 2 24 427 449 427 452 0.81 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF235-207 - 734 1e-06 28.6 110.8 7 16 0.017 20 5.3 2.7 2 12 455 465 455 477 0.90 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF235-207 - 734 1e-06 28.6 110.8 8 16 0.0036 4.4 7.4 1.6 2 13 483 494 483 505 0.88 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF235-207 - 734 1e-06 28.6 110.8 9 16 0.004 4.8 7.3 0.5 2 12 511 521 511 522 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF235-207 - 734 1e-06 28.6 110.8 10 16 0.0021 2.5 8.2 0.2 2 12 539 549 539 557 0.95 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF235-207 - 734 1e-06 28.6 110.8 11 16 0.0043 5.2 7.2 0.9 2 20 567 585 567 591 0.83 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF235-207 - 734 1e-06 28.6 110.8 12 16 0.027 32 4.7 0.7 2 12 595 605 595 617 0.87 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF235-207 - 734 1e-06 28.6 110.8 13 16 0.00088 1.1 9.4 0.3 2 12 623 633 623 641 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF235-207 - 734 1e-06 28.6 110.8 14 16 0.0033 4 7.6 0.3 2 12 651 661 651 673 0.91 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF235-207 - 734 1e-06 28.6 110.8 15 16 0.0095 11 6.1 0.4 2 12 679 689 679 690 0.91 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF235-207 - 734 1e-06 28.6 110.8 16 16 0.087 1e+02 3.0 1.4 2 12 707 717 707 725 0.93 C2H2-type zinc finger # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF235-207.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF235-207.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF235-207.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF235-207.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF235-207.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:02:15 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZNF239-201 - 458 5.6e-62 203.6 73.5 1 11 7.3 6.5e+03 -2.1 0.9 9 20 173 184 170 186 0.65 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF239-201 - 458 5.6e-62 203.6 73.5 2 11 1.1e-06 0.00096 19.5 1.3 7 25 199 217 195 218 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF239-201 - 458 5.6e-62 203.6 73.5 3 11 1.1e-09 9.7e-07 29.0 0.5 4 26 224 246 221 246 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF239-201 - 458 5.6e-62 203.6 73.5 4 11 2.6e-09 2.3e-06 27.7 0.3 5 26 253 274 249 274 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF239-201 - 458 5.6e-62 203.6 73.5 5 11 1.1e-09 1e-06 28.9 0.8 5 25 281 301 277 302 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF239-201 - 458 5.6e-62 203.6 73.5 6 11 3.4e-10 3e-07 30.5 0.6 5 25 309 329 306 330 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF239-201 - 458 5.6e-62 203.6 73.5 7 11 1.6e-09 1.5e-06 28.4 0.6 5 25 337 357 333 358 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF239-201 - 458 5.6e-62 203.6 73.5 8 11 5.1e-08 4.6e-05 23.7 2.4 5 25 363 385 361 386 0.83 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF239-201 - 458 5.6e-62 203.6 73.5 9 11 6.8e-11 6.1e-08 32.8 0.5 1 25 389 413 389 414 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF239-201 - 458 5.6e-62 203.6 73.5 10 11 2.2e-11 1.9e-08 34.3 0.4 5 25 421 441 417 442 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF239-201 - 458 5.6e-62 203.6 73.5 11 11 6.6 5.9e+03 -2.0 0.9 5 11 449 455 445 456 0.80 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZNF239-201 - 458 2e-52 172.8 70.1 1 10 3.8 3.4e+03 -1.1 0.1 3 12 179 190 178 192 0.77 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF239-201 - 458 2e-52 172.8 70.1 2 10 7.8e-08 7e-05 23.1 0.5 1 23 207 229 207 229 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF239-201 - 458 2e-52 172.8 70.1 3 10 3e-08 2.7e-05 24.4 0.2 1 23 235 257 235 257 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF239-201 - 458 2e-52 172.8 70.1 4 10 1e-07 9.1e-05 22.7 1.2 1 23 263 285 263 285 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF239-201 - 458 2e-52 172.8 70.1 5 10 5.4e-08 4.9e-05 23.6 2.4 1 23 291 313 291 313 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF239-201 - 458 2e-52 172.8 70.1 6 10 4.5e-09 4e-06 27.0 1.1 1 23 319 341 319 341 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF239-201 - 458 2e-52 172.8 70.1 7 10 1.2e-07 0.00011 22.5 2.8 1 23 347 369 347 369 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF239-201 - 458 2e-52 172.8 70.1 8 10 7.1e-09 6.3e-06 26.3 0.4 1 23 375 397 375 397 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF239-201 - 458 2e-52 172.8 70.1 9 10 1.3e-07 0.00011 22.4 1.4 1 23 403 425 403 425 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF239-201 - 458 2e-52 172.8 70.1 10 10 1.2e-08 1.1e-05 25.6 1.6 1 23 431 453 431 453 0.98 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZNF239-201 - 458 2.2e-28 96.5 64.8 1 10 6.8 6.1e+03 -1.4 0.1 2 12 178 190 177 195 0.79 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF239-201 - 458 2.2e-28 96.5 64.8 2 10 5.5e-06 0.0049 17.6 0.6 1 23 207 229 207 230 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF239-201 - 458 2.2e-28 96.5 64.8 3 10 4.6e-06 0.0041 17.8 0.3 1 23 235 257 235 258 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF239-201 - 458 2.2e-28 96.5 64.8 4 10 3.3e-05 0.029 15.2 1.0 1 23 263 285 263 286 0.86 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF239-201 - 458 2.2e-28 96.5 64.8 5 10 3.4e-05 0.031 15.1 1.9 1 23 291 313 291 314 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF239-201 - 458 2.2e-28 96.5 64.8 6 10 4.9e-05 0.044 14.6 1.0 1 23 319 341 319 342 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF239-201 - 458 2.2e-28 96.5 64.8 7 10 0.00047 0.42 11.6 0.5 1 19 347 365 347 366 0.90 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF239-201 - 458 2.2e-28 96.5 64.8 8 10 3.6e-06 0.0032 18.2 0.4 1 23 375 397 375 398 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF239-201 - 458 2.2e-28 96.5 64.8 9 10 9.6e-05 0.086 13.7 1.3 1 23 403 425 403 426 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF239-201 - 458 2.2e-28 96.5 64.8 10 10 4.3e-05 0.038 14.8 1.7 1 23 431 453 431 454 0.93 C2H2-type zinc finger zf_UBZ PF18439.1 32 ZNF239-201 - 458 5.7e-12 45.0 31.0 1 9 0.00014 0.13 11.9 0.2 2 20 206 225 205 226 0.85 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF239-201 - 458 5.7e-12 45.0 31.0 2 9 0.0085 7.6 6.2 0.1 3 14 235 246 233 254 0.79 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF239-201 - 458 5.7e-12 45.0 31.0 3 9 0.0084 7.5 6.2 0.1 3 13 263 273 261 281 0.82 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF239-201 - 458 5.7e-12 45.0 31.0 4 9 0.0014 1.3 8.7 0.2 3 16 291 304 289 310 0.83 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF239-201 - 458 5.7e-12 45.0 31.0 5 9 0.007 6.3 6.5 0.1 3 14 319 330 317 337 0.88 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF239-201 - 458 5.7e-12 45.0 31.0 6 9 0.019 17 5.1 0.1 3 15 347 359 345 363 0.87 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF239-201 - 458 5.7e-12 45.0 31.0 7 9 0.018 16 5.2 0.1 3 17 375 390 373 394 0.81 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF239-201 - 458 5.7e-12 45.0 31.0 8 9 0.018 16 5.2 0.1 3 16 403 417 401 422 0.80 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF239-201 - 458 5.7e-12 45.0 31.0 9 9 0.0048 4.3 7.0 0.2 3 15 431 443 429 450 0.84 Ubiquitin-Binding Zinc Finger C1_4 PF07975.12 55 ZNF239-201 - 458 1.8e-09 37.6 34.4 1 8 0.019 17 5.7 1.2 18 47 199 228 164 230 0.76 TFIIH C1-like domain C1_4 PF07975.12 55 ZNF239-201 - 458 1.8e-09 37.6 34.4 2 8 0.00045 0.4 10.9 1.4 1 49 208 258 208 260 0.84 TFIIH C1-like domain C1_4 PF07975.12 55 ZNF239-201 - 458 1.8e-09 37.6 34.4 3 8 0.0033 2.9 8.2 0.9 2 49 237 286 236 289 0.79 TFIIH C1-like domain C1_4 PF07975.12 55 ZNF239-201 - 458 1.8e-09 37.6 34.4 4 8 0.0079 7.1 7.0 0.1 25 49 290 314 286 316 0.91 TFIIH C1-like domain C1_4 PF07975.12 55 ZNF239-201 - 458 1.8e-09 37.6 34.4 5 8 0.0032 2.9 8.2 3.6 1 49 320 370 320 373 0.86 TFIIH C1-like domain C1_4 PF07975.12 55 ZNF239-201 - 458 1.8e-09 37.6 34.4 6 8 0.016 15 5.9 2.2 2 49 349 398 348 400 0.80 TFIIH C1-like domain C1_4 PF07975.12 55 ZNF239-201 - 458 1.8e-09 37.6 34.4 7 8 0.00034 0.31 11.3 0.6 1 49 376 426 376 429 0.87 TFIIH C1-like domain C1_4 PF07975.12 55 ZNF239-201 - 458 1.8e-09 37.6 34.4 8 8 0.0063 5.6 7.3 0.1 25 49 430 454 426 455 0.92 TFIIH C1-like domain Zn-ribbon_8 PF09723.10 40 ZNF239-201 - 458 2.5e-09 37.1 52.1 1 10 6.2 5.6e+03 -2.4 0.2 20 34 171 186 168 189 0.59 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF239-201 - 458 2.5e-09 37.1 52.1 2 10 4e-05 0.036 14.2 5.8 5 38 206 246 205 247 0.80 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF239-201 - 458 2.5e-09 37.1 52.1 3 10 2.8e-06 0.0025 17.9 2.6 6 38 235 274 234 275 0.85 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF239-201 - 458 2.5e-09 37.1 52.1 4 10 0.0035 3.1 8.0 0.2 6 17 263 274 262 281 0.86 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF239-201 - 458 2.5e-09 37.1 52.1 5 10 7.7e-05 0.069 13.3 4.5 6 34 291 326 290 332 0.88 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF239-201 - 458 2.5e-09 37.1 52.1 6 10 0.011 9.5 6.4 0.8 6 19 319 332 318 342 0.82 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF239-201 - 458 2.5e-09 37.1 52.1 7 10 0.013 11 6.2 7.2 6 34 347 382 346 387 0.85 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF239-201 - 458 2.5e-09 37.1 52.1 8 10 0.056 50 4.1 0.7 6 16 375 385 374 397 0.85 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF239-201 - 458 2.5e-09 37.1 52.1 9 10 8.1e-05 0.072 13.2 2.4 6 34 403 438 402 442 0.92 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF239-201 - 458 2.5e-09 37.1 52.1 10 10 0.0067 6 7.1 0.4 6 17 431 442 429 454 0.83 Zinc ribbon domain XPA_N PF01286.18 32 ZNF239-201 - 458 2.3e-08 33.9 41.8 1 10 7.9 7.1e+03 -2.8 0.0 6 14 183 191 182 191 0.83 XPA protein N-terminal XPA_N PF01286.18 32 ZNF239-201 - 458 2.3e-08 33.9 41.8 2 10 0.016 14 5.8 0.8 3 14 208 219 206 222 0.92 XPA protein N-terminal XPA_N PF01286.18 32 ZNF239-201 - 458 2.3e-08 33.9 41.8 3 10 0.0063 5.6 7.1 0.2 3 14 236 247 234 250 0.91 XPA protein N-terminal XPA_N PF01286.18 32 ZNF239-201 - 458 2.3e-08 33.9 41.8 4 10 0.0026 2.4 8.3 0.1 3 14 264 275 262 279 0.90 XPA protein N-terminal XPA_N PF01286.18 32 ZNF239-201 - 458 2.3e-08 33.9 41.8 5 10 0.0019 1.7 8.8 0.3 3 14 292 303 290 306 0.91 XPA protein N-terminal XPA_N PF01286.18 32 ZNF239-201 - 458 2.3e-08 33.9 41.8 6 10 0.059 53 4.0 0.3 3 12 320 329 318 331 0.86 XPA protein N-terminal XPA_N PF01286.18 32 ZNF239-201 - 458 2.3e-08 33.9 41.8 7 10 0.0062 5.6 7.1 0.1 3 14 348 359 346 364 0.92 XPA protein N-terminal XPA_N PF01286.18 32 ZNF239-201 - 458 2.3e-08 33.9 41.8 8 10 0.01 9.1 6.4 0.2 3 14 376 387 374 388 0.91 XPA protein N-terminal XPA_N PF01286.18 32 ZNF239-201 - 458 2.3e-08 33.9 41.8 9 10 0.021 19 5.4 0.1 3 14 404 415 402 420 0.89 XPA protein N-terminal XPA_N PF01286.18 32 ZNF239-201 - 458 2.3e-08 33.9 41.8 10 10 0.015 13 5.9 0.5 3 14 432 443 430 444 0.91 XPA protein N-terminal CpXC PF14353.6 118 ZNF239-201 - 458 1.2e-07 31.8 27.4 1 10 2.2 2e+03 -1.2 0.0 65 99 95 128 68 134 0.63 CpXC protein CpXC PF14353.6 118 ZNF239-201 - 458 1.2e-07 31.8 27.4 2 10 0.0019 1.7 8.7 0.1 37 60 206 229 186 235 0.87 CpXC protein CpXC PF14353.6 118 ZNF239-201 - 458 1.2e-07 31.8 27.4 3 10 0.0061 5.5 7.1 0.0 38 59 235 256 231 261 0.90 CpXC protein CpXC PF14353.6 118 ZNF239-201 - 458 1.2e-07 31.8 27.4 4 10 0.013 12 6.0 0.1 38 58 263 283 257 287 0.89 CpXC protein CpXC PF14353.6 118 ZNF239-201 - 458 1.2e-07 31.8 27.4 5 10 0.029 26 4.9 0.1 38 58 291 311 289 315 0.88 CpXC protein CpXC PF14353.6 118 ZNF239-201 - 458 1.2e-07 31.8 27.4 6 10 0.049 44 4.1 0.1 38 58 319 339 312 344 0.89 CpXC protein CpXC PF14353.6 118 ZNF239-201 - 458 1.2e-07 31.8 27.4 7 10 0.39 3.5e+02 1.2 0.1 38 57 347 366 340 372 0.88 CpXC protein CpXC PF14353.6 118 ZNF239-201 - 458 1.2e-07 31.8 27.4 8 10 0.3 2.7e+02 1.6 0.1 38 56 375 393 372 398 0.86 CpXC protein CpXC PF14353.6 118 ZNF239-201 - 458 1.2e-07 31.8 27.4 9 10 0.019 17 5.5 0.0 38 59 403 424 400 427 0.90 CpXC protein CpXC PF14353.6 118 ZNF239-201 - 458 1.2e-07 31.8 27.4 10 10 0.038 34 4.5 0.1 38 60 431 453 429 455 0.88 CpXC protein # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF239-201.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF239-201.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF239-201.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF239-201.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF239-201.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:02:16 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZNF239-202 - 458 5.6e-62 203.6 73.5 1 11 7.3 6.5e+03 -2.1 0.9 9 20 173 184 170 186 0.65 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF239-202 - 458 5.6e-62 203.6 73.5 2 11 1.1e-06 0.00096 19.5 1.3 7 25 199 217 195 218 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF239-202 - 458 5.6e-62 203.6 73.5 3 11 1.1e-09 9.7e-07 29.0 0.5 4 26 224 246 221 246 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF239-202 - 458 5.6e-62 203.6 73.5 4 11 2.6e-09 2.3e-06 27.7 0.3 5 26 253 274 249 274 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF239-202 - 458 5.6e-62 203.6 73.5 5 11 1.1e-09 1e-06 28.9 0.8 5 25 281 301 277 302 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF239-202 - 458 5.6e-62 203.6 73.5 6 11 3.4e-10 3e-07 30.5 0.6 5 25 309 329 306 330 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF239-202 - 458 5.6e-62 203.6 73.5 7 11 1.6e-09 1.5e-06 28.4 0.6 5 25 337 357 333 358 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF239-202 - 458 5.6e-62 203.6 73.5 8 11 5.1e-08 4.6e-05 23.7 2.4 5 25 363 385 361 386 0.83 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF239-202 - 458 5.6e-62 203.6 73.5 9 11 6.8e-11 6.1e-08 32.8 0.5 1 25 389 413 389 414 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF239-202 - 458 5.6e-62 203.6 73.5 10 11 2.2e-11 1.9e-08 34.3 0.4 5 25 421 441 417 442 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF239-202 - 458 5.6e-62 203.6 73.5 11 11 6.6 5.9e+03 -2.0 0.9 5 11 449 455 445 456 0.80 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZNF239-202 - 458 2e-52 172.8 70.1 1 10 3.8 3.4e+03 -1.1 0.1 3 12 179 190 178 192 0.77 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF239-202 - 458 2e-52 172.8 70.1 2 10 7.8e-08 7e-05 23.1 0.5 1 23 207 229 207 229 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF239-202 - 458 2e-52 172.8 70.1 3 10 3e-08 2.7e-05 24.4 0.2 1 23 235 257 235 257 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF239-202 - 458 2e-52 172.8 70.1 4 10 1e-07 9.1e-05 22.7 1.2 1 23 263 285 263 285 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF239-202 - 458 2e-52 172.8 70.1 5 10 5.4e-08 4.9e-05 23.6 2.4 1 23 291 313 291 313 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF239-202 - 458 2e-52 172.8 70.1 6 10 4.5e-09 4e-06 27.0 1.1 1 23 319 341 319 341 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF239-202 - 458 2e-52 172.8 70.1 7 10 1.2e-07 0.00011 22.5 2.8 1 23 347 369 347 369 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF239-202 - 458 2e-52 172.8 70.1 8 10 7.1e-09 6.3e-06 26.3 0.4 1 23 375 397 375 397 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF239-202 - 458 2e-52 172.8 70.1 9 10 1.3e-07 0.00011 22.4 1.4 1 23 403 425 403 425 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF239-202 - 458 2e-52 172.8 70.1 10 10 1.2e-08 1.1e-05 25.6 1.6 1 23 431 453 431 453 0.98 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZNF239-202 - 458 2.2e-28 96.5 64.8 1 10 6.8 6.1e+03 -1.4 0.1 2 12 178 190 177 195 0.79 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF239-202 - 458 2.2e-28 96.5 64.8 2 10 5.5e-06 0.0049 17.6 0.6 1 23 207 229 207 230 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF239-202 - 458 2.2e-28 96.5 64.8 3 10 4.6e-06 0.0041 17.8 0.3 1 23 235 257 235 258 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF239-202 - 458 2.2e-28 96.5 64.8 4 10 3.3e-05 0.029 15.2 1.0 1 23 263 285 263 286 0.86 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF239-202 - 458 2.2e-28 96.5 64.8 5 10 3.4e-05 0.031 15.1 1.9 1 23 291 313 291 314 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF239-202 - 458 2.2e-28 96.5 64.8 6 10 4.9e-05 0.044 14.6 1.0 1 23 319 341 319 342 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF239-202 - 458 2.2e-28 96.5 64.8 7 10 0.00047 0.42 11.6 0.5 1 19 347 365 347 366 0.90 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF239-202 - 458 2.2e-28 96.5 64.8 8 10 3.6e-06 0.0032 18.2 0.4 1 23 375 397 375 398 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF239-202 - 458 2.2e-28 96.5 64.8 9 10 9.6e-05 0.086 13.7 1.3 1 23 403 425 403 426 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF239-202 - 458 2.2e-28 96.5 64.8 10 10 4.3e-05 0.038 14.8 1.7 1 23 431 453 431 454 0.93 C2H2-type zinc finger zf_UBZ PF18439.1 32 ZNF239-202 - 458 5.7e-12 45.0 31.0 1 9 0.00014 0.13 11.9 0.2 2 20 206 225 205 226 0.85 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF239-202 - 458 5.7e-12 45.0 31.0 2 9 0.0085 7.6 6.2 0.1 3 14 235 246 233 254 0.79 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF239-202 - 458 5.7e-12 45.0 31.0 3 9 0.0084 7.5 6.2 0.1 3 13 263 273 261 281 0.82 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF239-202 - 458 5.7e-12 45.0 31.0 4 9 0.0014 1.3 8.7 0.2 3 16 291 304 289 310 0.83 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF239-202 - 458 5.7e-12 45.0 31.0 5 9 0.007 6.3 6.5 0.1 3 14 319 330 317 337 0.88 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF239-202 - 458 5.7e-12 45.0 31.0 6 9 0.019 17 5.1 0.1 3 15 347 359 345 363 0.87 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF239-202 - 458 5.7e-12 45.0 31.0 7 9 0.018 16 5.2 0.1 3 17 375 390 373 394 0.81 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF239-202 - 458 5.7e-12 45.0 31.0 8 9 0.018 16 5.2 0.1 3 16 403 417 401 422 0.80 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF239-202 - 458 5.7e-12 45.0 31.0 9 9 0.0048 4.3 7.0 0.2 3 15 431 443 429 450 0.84 Ubiquitin-Binding Zinc Finger C1_4 PF07975.12 55 ZNF239-202 - 458 1.8e-09 37.6 34.4 1 8 0.019 17 5.7 1.2 18 47 199 228 164 230 0.76 TFIIH C1-like domain C1_4 PF07975.12 55 ZNF239-202 - 458 1.8e-09 37.6 34.4 2 8 0.00045 0.4 10.9 1.4 1 49 208 258 208 260 0.84 TFIIH C1-like domain C1_4 PF07975.12 55 ZNF239-202 - 458 1.8e-09 37.6 34.4 3 8 0.0033 2.9 8.2 0.9 2 49 237 286 236 289 0.79 TFIIH C1-like domain C1_4 PF07975.12 55 ZNF239-202 - 458 1.8e-09 37.6 34.4 4 8 0.0079 7.1 7.0 0.1 25 49 290 314 286 316 0.91 TFIIH C1-like domain C1_4 PF07975.12 55 ZNF239-202 - 458 1.8e-09 37.6 34.4 5 8 0.0032 2.9 8.2 3.6 1 49 320 370 320 373 0.86 TFIIH C1-like domain C1_4 PF07975.12 55 ZNF239-202 - 458 1.8e-09 37.6 34.4 6 8 0.016 15 5.9 2.2 2 49 349 398 348 400 0.80 TFIIH C1-like domain C1_4 PF07975.12 55 ZNF239-202 - 458 1.8e-09 37.6 34.4 7 8 0.00034 0.31 11.3 0.6 1 49 376 426 376 429 0.87 TFIIH C1-like domain C1_4 PF07975.12 55 ZNF239-202 - 458 1.8e-09 37.6 34.4 8 8 0.0063 5.6 7.3 0.1 25 49 430 454 426 455 0.92 TFIIH C1-like domain Zn-ribbon_8 PF09723.10 40 ZNF239-202 - 458 2.5e-09 37.1 52.1 1 10 6.2 5.6e+03 -2.4 0.2 20 34 171 186 168 189 0.59 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF239-202 - 458 2.5e-09 37.1 52.1 2 10 4e-05 0.036 14.2 5.8 5 38 206 246 205 247 0.80 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF239-202 - 458 2.5e-09 37.1 52.1 3 10 2.8e-06 0.0025 17.9 2.6 6 38 235 274 234 275 0.85 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF239-202 - 458 2.5e-09 37.1 52.1 4 10 0.0035 3.1 8.0 0.2 6 17 263 274 262 281 0.86 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF239-202 - 458 2.5e-09 37.1 52.1 5 10 7.7e-05 0.069 13.3 4.5 6 34 291 326 290 332 0.88 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF239-202 - 458 2.5e-09 37.1 52.1 6 10 0.011 9.5 6.4 0.8 6 19 319 332 318 342 0.82 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF239-202 - 458 2.5e-09 37.1 52.1 7 10 0.013 11 6.2 7.2 6 34 347 382 346 387 0.85 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF239-202 - 458 2.5e-09 37.1 52.1 8 10 0.056 50 4.1 0.7 6 16 375 385 374 397 0.85 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF239-202 - 458 2.5e-09 37.1 52.1 9 10 8.1e-05 0.072 13.2 2.4 6 34 403 438 402 442 0.92 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF239-202 - 458 2.5e-09 37.1 52.1 10 10 0.0067 6 7.1 0.4 6 17 431 442 429 454 0.83 Zinc ribbon domain XPA_N PF01286.18 32 ZNF239-202 - 458 2.3e-08 33.9 41.8 1 10 7.9 7.1e+03 -2.8 0.0 6 14 183 191 182 191 0.83 XPA protein N-terminal XPA_N PF01286.18 32 ZNF239-202 - 458 2.3e-08 33.9 41.8 2 10 0.016 14 5.8 0.8 3 14 208 219 206 222 0.92 XPA protein N-terminal XPA_N PF01286.18 32 ZNF239-202 - 458 2.3e-08 33.9 41.8 3 10 0.0063 5.6 7.1 0.2 3 14 236 247 234 250 0.91 XPA protein N-terminal XPA_N PF01286.18 32 ZNF239-202 - 458 2.3e-08 33.9 41.8 4 10 0.0026 2.4 8.3 0.1 3 14 264 275 262 279 0.90 XPA protein N-terminal XPA_N PF01286.18 32 ZNF239-202 - 458 2.3e-08 33.9 41.8 5 10 0.0019 1.7 8.8 0.3 3 14 292 303 290 306 0.91 XPA protein N-terminal XPA_N PF01286.18 32 ZNF239-202 - 458 2.3e-08 33.9 41.8 6 10 0.059 53 4.0 0.3 3 12 320 329 318 331 0.86 XPA protein N-terminal XPA_N PF01286.18 32 ZNF239-202 - 458 2.3e-08 33.9 41.8 7 10 0.0062 5.6 7.1 0.1 3 14 348 359 346 364 0.92 XPA protein N-terminal XPA_N PF01286.18 32 ZNF239-202 - 458 2.3e-08 33.9 41.8 8 10 0.01 9.1 6.4 0.2 3 14 376 387 374 388 0.91 XPA protein N-terminal XPA_N PF01286.18 32 ZNF239-202 - 458 2.3e-08 33.9 41.8 9 10 0.021 19 5.4 0.1 3 14 404 415 402 420 0.89 XPA protein N-terminal XPA_N PF01286.18 32 ZNF239-202 - 458 2.3e-08 33.9 41.8 10 10 0.015 13 5.9 0.5 3 14 432 443 430 444 0.91 XPA protein N-terminal CpXC PF14353.6 118 ZNF239-202 - 458 1.2e-07 31.8 27.4 1 10 2.2 2e+03 -1.2 0.0 65 99 95 128 68 134 0.63 CpXC protein CpXC PF14353.6 118 ZNF239-202 - 458 1.2e-07 31.8 27.4 2 10 0.0019 1.7 8.7 0.1 37 60 206 229 186 235 0.87 CpXC protein CpXC PF14353.6 118 ZNF239-202 - 458 1.2e-07 31.8 27.4 3 10 0.0061 5.5 7.1 0.0 38 59 235 256 231 261 0.90 CpXC protein CpXC PF14353.6 118 ZNF239-202 - 458 1.2e-07 31.8 27.4 4 10 0.013 12 6.0 0.1 38 58 263 283 257 287 0.89 CpXC protein CpXC PF14353.6 118 ZNF239-202 - 458 1.2e-07 31.8 27.4 5 10 0.029 26 4.9 0.1 38 58 291 311 289 315 0.88 CpXC protein CpXC PF14353.6 118 ZNF239-202 - 458 1.2e-07 31.8 27.4 6 10 0.049 44 4.1 0.1 38 58 319 339 312 344 0.89 CpXC protein CpXC PF14353.6 118 ZNF239-202 - 458 1.2e-07 31.8 27.4 7 10 0.39 3.5e+02 1.2 0.1 38 57 347 366 340 372 0.88 CpXC protein CpXC PF14353.6 118 ZNF239-202 - 458 1.2e-07 31.8 27.4 8 10 0.3 2.7e+02 1.6 0.1 38 56 375 393 372 398 0.86 CpXC protein CpXC PF14353.6 118 ZNF239-202 - 458 1.2e-07 31.8 27.4 9 10 0.019 17 5.5 0.0 38 59 403 424 400 427 0.90 CpXC protein CpXC PF14353.6 118 ZNF239-202 - 458 1.2e-07 31.8 27.4 10 10 0.038 34 4.5 0.1 38 60 431 453 429 455 0.88 CpXC protein # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF239-202.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF239-202.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF239-202.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF239-202.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF239-202.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:02:16 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZNF239-203 - 458 5.6e-62 203.6 73.5 1 11 7.3 6.5e+03 -2.1 0.9 9 20 173 184 170 186 0.65 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF239-203 - 458 5.6e-62 203.6 73.5 2 11 1.1e-06 0.00096 19.5 1.3 7 25 199 217 195 218 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF239-203 - 458 5.6e-62 203.6 73.5 3 11 1.1e-09 9.7e-07 29.0 0.5 4 26 224 246 221 246 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF239-203 - 458 5.6e-62 203.6 73.5 4 11 2.6e-09 2.3e-06 27.7 0.3 5 26 253 274 249 274 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF239-203 - 458 5.6e-62 203.6 73.5 5 11 1.1e-09 1e-06 28.9 0.8 5 25 281 301 277 302 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF239-203 - 458 5.6e-62 203.6 73.5 6 11 3.4e-10 3e-07 30.5 0.6 5 25 309 329 306 330 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF239-203 - 458 5.6e-62 203.6 73.5 7 11 1.6e-09 1.5e-06 28.4 0.6 5 25 337 357 333 358 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF239-203 - 458 5.6e-62 203.6 73.5 8 11 5.1e-08 4.6e-05 23.7 2.4 5 25 363 385 361 386 0.83 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF239-203 - 458 5.6e-62 203.6 73.5 9 11 6.8e-11 6.1e-08 32.8 0.5 1 25 389 413 389 414 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF239-203 - 458 5.6e-62 203.6 73.5 10 11 2.2e-11 1.9e-08 34.3 0.4 5 25 421 441 417 442 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF239-203 - 458 5.6e-62 203.6 73.5 11 11 6.6 5.9e+03 -2.0 0.9 5 11 449 455 445 456 0.80 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZNF239-203 - 458 2e-52 172.8 70.1 1 10 3.8 3.4e+03 -1.1 0.1 3 12 179 190 178 192 0.77 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF239-203 - 458 2e-52 172.8 70.1 2 10 7.8e-08 7e-05 23.1 0.5 1 23 207 229 207 229 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF239-203 - 458 2e-52 172.8 70.1 3 10 3e-08 2.7e-05 24.4 0.2 1 23 235 257 235 257 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF239-203 - 458 2e-52 172.8 70.1 4 10 1e-07 9.1e-05 22.7 1.2 1 23 263 285 263 285 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF239-203 - 458 2e-52 172.8 70.1 5 10 5.4e-08 4.9e-05 23.6 2.4 1 23 291 313 291 313 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF239-203 - 458 2e-52 172.8 70.1 6 10 4.5e-09 4e-06 27.0 1.1 1 23 319 341 319 341 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF239-203 - 458 2e-52 172.8 70.1 7 10 1.2e-07 0.00011 22.5 2.8 1 23 347 369 347 369 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF239-203 - 458 2e-52 172.8 70.1 8 10 7.1e-09 6.3e-06 26.3 0.4 1 23 375 397 375 397 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF239-203 - 458 2e-52 172.8 70.1 9 10 1.3e-07 0.00011 22.4 1.4 1 23 403 425 403 425 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF239-203 - 458 2e-52 172.8 70.1 10 10 1.2e-08 1.1e-05 25.6 1.6 1 23 431 453 431 453 0.98 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZNF239-203 - 458 2.2e-28 96.5 64.8 1 10 6.8 6.1e+03 -1.4 0.1 2 12 178 190 177 195 0.79 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF239-203 - 458 2.2e-28 96.5 64.8 2 10 5.5e-06 0.0049 17.6 0.6 1 23 207 229 207 230 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF239-203 - 458 2.2e-28 96.5 64.8 3 10 4.6e-06 0.0041 17.8 0.3 1 23 235 257 235 258 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF239-203 - 458 2.2e-28 96.5 64.8 4 10 3.3e-05 0.029 15.2 1.0 1 23 263 285 263 286 0.86 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF239-203 - 458 2.2e-28 96.5 64.8 5 10 3.4e-05 0.031 15.1 1.9 1 23 291 313 291 314 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF239-203 - 458 2.2e-28 96.5 64.8 6 10 4.9e-05 0.044 14.6 1.0 1 23 319 341 319 342 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF239-203 - 458 2.2e-28 96.5 64.8 7 10 0.00047 0.42 11.6 0.5 1 19 347 365 347 366 0.90 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF239-203 - 458 2.2e-28 96.5 64.8 8 10 3.6e-06 0.0032 18.2 0.4 1 23 375 397 375 398 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF239-203 - 458 2.2e-28 96.5 64.8 9 10 9.6e-05 0.086 13.7 1.3 1 23 403 425 403 426 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF239-203 - 458 2.2e-28 96.5 64.8 10 10 4.3e-05 0.038 14.8 1.7 1 23 431 453 431 454 0.93 C2H2-type zinc finger zf_UBZ PF18439.1 32 ZNF239-203 - 458 5.7e-12 45.0 31.0 1 9 0.00014 0.13 11.9 0.2 2 20 206 225 205 226 0.85 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF239-203 - 458 5.7e-12 45.0 31.0 2 9 0.0085 7.6 6.2 0.1 3 14 235 246 233 254 0.79 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF239-203 - 458 5.7e-12 45.0 31.0 3 9 0.0084 7.5 6.2 0.1 3 13 263 273 261 281 0.82 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF239-203 - 458 5.7e-12 45.0 31.0 4 9 0.0014 1.3 8.7 0.2 3 16 291 304 289 310 0.83 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF239-203 - 458 5.7e-12 45.0 31.0 5 9 0.007 6.3 6.5 0.1 3 14 319 330 317 337 0.88 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF239-203 - 458 5.7e-12 45.0 31.0 6 9 0.019 17 5.1 0.1 3 15 347 359 345 363 0.87 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF239-203 - 458 5.7e-12 45.0 31.0 7 9 0.018 16 5.2 0.1 3 17 375 390 373 394 0.81 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF239-203 - 458 5.7e-12 45.0 31.0 8 9 0.018 16 5.2 0.1 3 16 403 417 401 422 0.80 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF239-203 - 458 5.7e-12 45.0 31.0 9 9 0.0048 4.3 7.0 0.2 3 15 431 443 429 450 0.84 Ubiquitin-Binding Zinc Finger C1_4 PF07975.12 55 ZNF239-203 - 458 1.8e-09 37.6 34.4 1 8 0.019 17 5.7 1.2 18 47 199 228 164 230 0.76 TFIIH C1-like domain C1_4 PF07975.12 55 ZNF239-203 - 458 1.8e-09 37.6 34.4 2 8 0.00045 0.4 10.9 1.4 1 49 208 258 208 260 0.84 TFIIH C1-like domain C1_4 PF07975.12 55 ZNF239-203 - 458 1.8e-09 37.6 34.4 3 8 0.0033 2.9 8.2 0.9 2 49 237 286 236 289 0.79 TFIIH C1-like domain C1_4 PF07975.12 55 ZNF239-203 - 458 1.8e-09 37.6 34.4 4 8 0.0079 7.1 7.0 0.1 25 49 290 314 286 316 0.91 TFIIH C1-like domain C1_4 PF07975.12 55 ZNF239-203 - 458 1.8e-09 37.6 34.4 5 8 0.0032 2.9 8.2 3.6 1 49 320 370 320 373 0.86 TFIIH C1-like domain C1_4 PF07975.12 55 ZNF239-203 - 458 1.8e-09 37.6 34.4 6 8 0.016 15 5.9 2.2 2 49 349 398 348 400 0.80 TFIIH C1-like domain C1_4 PF07975.12 55 ZNF239-203 - 458 1.8e-09 37.6 34.4 7 8 0.00034 0.31 11.3 0.6 1 49 376 426 376 429 0.87 TFIIH C1-like domain C1_4 PF07975.12 55 ZNF239-203 - 458 1.8e-09 37.6 34.4 8 8 0.0063 5.6 7.3 0.1 25 49 430 454 426 455 0.92 TFIIH C1-like domain Zn-ribbon_8 PF09723.10 40 ZNF239-203 - 458 2.5e-09 37.1 52.1 1 10 6.2 5.6e+03 -2.4 0.2 20 34 171 186 168 189 0.59 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF239-203 - 458 2.5e-09 37.1 52.1 2 10 4e-05 0.036 14.2 5.8 5 38 206 246 205 247 0.80 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF239-203 - 458 2.5e-09 37.1 52.1 3 10 2.8e-06 0.0025 17.9 2.6 6 38 235 274 234 275 0.85 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF239-203 - 458 2.5e-09 37.1 52.1 4 10 0.0035 3.1 8.0 0.2 6 17 263 274 262 281 0.86 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF239-203 - 458 2.5e-09 37.1 52.1 5 10 7.7e-05 0.069 13.3 4.5 6 34 291 326 290 332 0.88 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF239-203 - 458 2.5e-09 37.1 52.1 6 10 0.011 9.5 6.4 0.8 6 19 319 332 318 342 0.82 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF239-203 - 458 2.5e-09 37.1 52.1 7 10 0.013 11 6.2 7.2 6 34 347 382 346 387 0.85 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF239-203 - 458 2.5e-09 37.1 52.1 8 10 0.056 50 4.1 0.7 6 16 375 385 374 397 0.85 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF239-203 - 458 2.5e-09 37.1 52.1 9 10 8.1e-05 0.072 13.2 2.4 6 34 403 438 402 442 0.92 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF239-203 - 458 2.5e-09 37.1 52.1 10 10 0.0067 6 7.1 0.4 6 17 431 442 429 454 0.83 Zinc ribbon domain XPA_N PF01286.18 32 ZNF239-203 - 458 2.3e-08 33.9 41.8 1 10 7.9 7.1e+03 -2.8 0.0 6 14 183 191 182 191 0.83 XPA protein N-terminal XPA_N PF01286.18 32 ZNF239-203 - 458 2.3e-08 33.9 41.8 2 10 0.016 14 5.8 0.8 3 14 208 219 206 222 0.92 XPA protein N-terminal XPA_N PF01286.18 32 ZNF239-203 - 458 2.3e-08 33.9 41.8 3 10 0.0063 5.6 7.1 0.2 3 14 236 247 234 250 0.91 XPA protein N-terminal XPA_N PF01286.18 32 ZNF239-203 - 458 2.3e-08 33.9 41.8 4 10 0.0026 2.4 8.3 0.1 3 14 264 275 262 279 0.90 XPA protein N-terminal XPA_N PF01286.18 32 ZNF239-203 - 458 2.3e-08 33.9 41.8 5 10 0.0019 1.7 8.8 0.3 3 14 292 303 290 306 0.91 XPA protein N-terminal XPA_N PF01286.18 32 ZNF239-203 - 458 2.3e-08 33.9 41.8 6 10 0.059 53 4.0 0.3 3 12 320 329 318 331 0.86 XPA protein N-terminal XPA_N PF01286.18 32 ZNF239-203 - 458 2.3e-08 33.9 41.8 7 10 0.0062 5.6 7.1 0.1 3 14 348 359 346 364 0.92 XPA protein N-terminal XPA_N PF01286.18 32 ZNF239-203 - 458 2.3e-08 33.9 41.8 8 10 0.01 9.1 6.4 0.2 3 14 376 387 374 388 0.91 XPA protein N-terminal XPA_N PF01286.18 32 ZNF239-203 - 458 2.3e-08 33.9 41.8 9 10 0.021 19 5.4 0.1 3 14 404 415 402 420 0.89 XPA protein N-terminal XPA_N PF01286.18 32 ZNF239-203 - 458 2.3e-08 33.9 41.8 10 10 0.015 13 5.9 0.5 3 14 432 443 430 444 0.91 XPA protein N-terminal CpXC PF14353.6 118 ZNF239-203 - 458 1.2e-07 31.8 27.4 1 10 2.2 2e+03 -1.2 0.0 65 99 95 128 68 134 0.63 CpXC protein CpXC PF14353.6 118 ZNF239-203 - 458 1.2e-07 31.8 27.4 2 10 0.0019 1.7 8.7 0.1 37 60 206 229 186 235 0.87 CpXC protein CpXC PF14353.6 118 ZNF239-203 - 458 1.2e-07 31.8 27.4 3 10 0.0061 5.5 7.1 0.0 38 59 235 256 231 261 0.90 CpXC protein CpXC PF14353.6 118 ZNF239-203 - 458 1.2e-07 31.8 27.4 4 10 0.013 12 6.0 0.1 38 58 263 283 257 287 0.89 CpXC protein CpXC PF14353.6 118 ZNF239-203 - 458 1.2e-07 31.8 27.4 5 10 0.029 26 4.9 0.1 38 58 291 311 289 315 0.88 CpXC protein CpXC PF14353.6 118 ZNF239-203 - 458 1.2e-07 31.8 27.4 6 10 0.049 44 4.1 0.1 38 58 319 339 312 344 0.89 CpXC protein CpXC PF14353.6 118 ZNF239-203 - 458 1.2e-07 31.8 27.4 7 10 0.39 3.5e+02 1.2 0.1 38 57 347 366 340 372 0.88 CpXC protein CpXC PF14353.6 118 ZNF239-203 - 458 1.2e-07 31.8 27.4 8 10 0.3 2.7e+02 1.6 0.1 38 56 375 393 372 398 0.86 CpXC protein CpXC PF14353.6 118 ZNF239-203 - 458 1.2e-07 31.8 27.4 9 10 0.019 17 5.5 0.0 38 59 403 424 400 427 0.90 CpXC protein CpXC PF14353.6 118 ZNF239-203 - 458 1.2e-07 31.8 27.4 10 10 0.038 34 4.5 0.1 38 60 431 453 429 455 0.88 CpXC protein # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF239-203.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF239-203.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF239-203.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF239-203.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF239-203.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:02:16 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF239-204.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF239-204.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF239-204.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF239-204.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF239-204.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:02:17 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZNF239-205 - 458 5.6e-62 203.6 73.5 1 11 7.3 6.5e+03 -2.1 0.9 9 20 173 184 170 186 0.65 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF239-205 - 458 5.6e-62 203.6 73.5 2 11 1.1e-06 0.00096 19.5 1.3 7 25 199 217 195 218 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF239-205 - 458 5.6e-62 203.6 73.5 3 11 1.1e-09 9.7e-07 29.0 0.5 4 26 224 246 221 246 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF239-205 - 458 5.6e-62 203.6 73.5 4 11 2.6e-09 2.3e-06 27.7 0.3 5 26 253 274 249 274 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF239-205 - 458 5.6e-62 203.6 73.5 5 11 1.1e-09 1e-06 28.9 0.8 5 25 281 301 277 302 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF239-205 - 458 5.6e-62 203.6 73.5 6 11 3.4e-10 3e-07 30.5 0.6 5 25 309 329 306 330 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF239-205 - 458 5.6e-62 203.6 73.5 7 11 1.6e-09 1.5e-06 28.4 0.6 5 25 337 357 333 358 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF239-205 - 458 5.6e-62 203.6 73.5 8 11 5.1e-08 4.6e-05 23.7 2.4 5 25 363 385 361 386 0.83 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF239-205 - 458 5.6e-62 203.6 73.5 9 11 6.8e-11 6.1e-08 32.8 0.5 1 25 389 413 389 414 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF239-205 - 458 5.6e-62 203.6 73.5 10 11 2.2e-11 1.9e-08 34.3 0.4 5 25 421 441 417 442 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF239-205 - 458 5.6e-62 203.6 73.5 11 11 6.6 5.9e+03 -2.0 0.9 5 11 449 455 445 456 0.80 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZNF239-205 - 458 2e-52 172.8 70.1 1 10 3.8 3.4e+03 -1.1 0.1 3 12 179 190 178 192 0.77 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF239-205 - 458 2e-52 172.8 70.1 2 10 7.8e-08 7e-05 23.1 0.5 1 23 207 229 207 229 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF239-205 - 458 2e-52 172.8 70.1 3 10 3e-08 2.7e-05 24.4 0.2 1 23 235 257 235 257 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF239-205 - 458 2e-52 172.8 70.1 4 10 1e-07 9.1e-05 22.7 1.2 1 23 263 285 263 285 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF239-205 - 458 2e-52 172.8 70.1 5 10 5.4e-08 4.9e-05 23.6 2.4 1 23 291 313 291 313 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF239-205 - 458 2e-52 172.8 70.1 6 10 4.5e-09 4e-06 27.0 1.1 1 23 319 341 319 341 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF239-205 - 458 2e-52 172.8 70.1 7 10 1.2e-07 0.00011 22.5 2.8 1 23 347 369 347 369 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF239-205 - 458 2e-52 172.8 70.1 8 10 7.1e-09 6.3e-06 26.3 0.4 1 23 375 397 375 397 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF239-205 - 458 2e-52 172.8 70.1 9 10 1.3e-07 0.00011 22.4 1.4 1 23 403 425 403 425 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF239-205 - 458 2e-52 172.8 70.1 10 10 1.2e-08 1.1e-05 25.6 1.6 1 23 431 453 431 453 0.98 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZNF239-205 - 458 2.2e-28 96.5 64.8 1 10 6.8 6.1e+03 -1.4 0.1 2 12 178 190 177 195 0.79 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF239-205 - 458 2.2e-28 96.5 64.8 2 10 5.5e-06 0.0049 17.6 0.6 1 23 207 229 207 230 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF239-205 - 458 2.2e-28 96.5 64.8 3 10 4.6e-06 0.0041 17.8 0.3 1 23 235 257 235 258 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF239-205 - 458 2.2e-28 96.5 64.8 4 10 3.3e-05 0.029 15.2 1.0 1 23 263 285 263 286 0.86 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF239-205 - 458 2.2e-28 96.5 64.8 5 10 3.4e-05 0.031 15.1 1.9 1 23 291 313 291 314 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF239-205 - 458 2.2e-28 96.5 64.8 6 10 4.9e-05 0.044 14.6 1.0 1 23 319 341 319 342 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF239-205 - 458 2.2e-28 96.5 64.8 7 10 0.00047 0.42 11.6 0.5 1 19 347 365 347 366 0.90 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF239-205 - 458 2.2e-28 96.5 64.8 8 10 3.6e-06 0.0032 18.2 0.4 1 23 375 397 375 398 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF239-205 - 458 2.2e-28 96.5 64.8 9 10 9.6e-05 0.086 13.7 1.3 1 23 403 425 403 426 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF239-205 - 458 2.2e-28 96.5 64.8 10 10 4.3e-05 0.038 14.8 1.7 1 23 431 453 431 454 0.93 C2H2-type zinc finger zf_UBZ PF18439.1 32 ZNF239-205 - 458 5.7e-12 45.0 31.0 1 9 0.00014 0.13 11.9 0.2 2 20 206 225 205 226 0.85 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF239-205 - 458 5.7e-12 45.0 31.0 2 9 0.0085 7.6 6.2 0.1 3 14 235 246 233 254 0.79 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF239-205 - 458 5.7e-12 45.0 31.0 3 9 0.0084 7.5 6.2 0.1 3 13 263 273 261 281 0.82 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF239-205 - 458 5.7e-12 45.0 31.0 4 9 0.0014 1.3 8.7 0.2 3 16 291 304 289 310 0.83 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF239-205 - 458 5.7e-12 45.0 31.0 5 9 0.007 6.3 6.5 0.1 3 14 319 330 317 337 0.88 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF239-205 - 458 5.7e-12 45.0 31.0 6 9 0.019 17 5.1 0.1 3 15 347 359 345 363 0.87 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF239-205 - 458 5.7e-12 45.0 31.0 7 9 0.018 16 5.2 0.1 3 17 375 390 373 394 0.81 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF239-205 - 458 5.7e-12 45.0 31.0 8 9 0.018 16 5.2 0.1 3 16 403 417 401 422 0.80 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF239-205 - 458 5.7e-12 45.0 31.0 9 9 0.0048 4.3 7.0 0.2 3 15 431 443 429 450 0.84 Ubiquitin-Binding Zinc Finger C1_4 PF07975.12 55 ZNF239-205 - 458 1.8e-09 37.6 34.4 1 8 0.019 17 5.7 1.2 18 47 199 228 164 230 0.76 TFIIH C1-like domain C1_4 PF07975.12 55 ZNF239-205 - 458 1.8e-09 37.6 34.4 2 8 0.00045 0.4 10.9 1.4 1 49 208 258 208 260 0.84 TFIIH C1-like domain C1_4 PF07975.12 55 ZNF239-205 - 458 1.8e-09 37.6 34.4 3 8 0.0033 2.9 8.2 0.9 2 49 237 286 236 289 0.79 TFIIH C1-like domain C1_4 PF07975.12 55 ZNF239-205 - 458 1.8e-09 37.6 34.4 4 8 0.0079 7.1 7.0 0.1 25 49 290 314 286 316 0.91 TFIIH C1-like domain C1_4 PF07975.12 55 ZNF239-205 - 458 1.8e-09 37.6 34.4 5 8 0.0032 2.9 8.2 3.6 1 49 320 370 320 373 0.86 TFIIH C1-like domain C1_4 PF07975.12 55 ZNF239-205 - 458 1.8e-09 37.6 34.4 6 8 0.016 15 5.9 2.2 2 49 349 398 348 400 0.80 TFIIH C1-like domain C1_4 PF07975.12 55 ZNF239-205 - 458 1.8e-09 37.6 34.4 7 8 0.00034 0.31 11.3 0.6 1 49 376 426 376 429 0.87 TFIIH C1-like domain C1_4 PF07975.12 55 ZNF239-205 - 458 1.8e-09 37.6 34.4 8 8 0.0063 5.6 7.3 0.1 25 49 430 454 426 455 0.92 TFIIH C1-like domain Zn-ribbon_8 PF09723.10 40 ZNF239-205 - 458 2.5e-09 37.1 52.1 1 10 6.2 5.6e+03 -2.4 0.2 20 34 171 186 168 189 0.59 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF239-205 - 458 2.5e-09 37.1 52.1 2 10 4e-05 0.036 14.2 5.8 5 38 206 246 205 247 0.80 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF239-205 - 458 2.5e-09 37.1 52.1 3 10 2.8e-06 0.0025 17.9 2.6 6 38 235 274 234 275 0.85 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF239-205 - 458 2.5e-09 37.1 52.1 4 10 0.0035 3.1 8.0 0.2 6 17 263 274 262 281 0.86 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF239-205 - 458 2.5e-09 37.1 52.1 5 10 7.7e-05 0.069 13.3 4.5 6 34 291 326 290 332 0.88 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF239-205 - 458 2.5e-09 37.1 52.1 6 10 0.011 9.5 6.4 0.8 6 19 319 332 318 342 0.82 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF239-205 - 458 2.5e-09 37.1 52.1 7 10 0.013 11 6.2 7.2 6 34 347 382 346 387 0.85 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF239-205 - 458 2.5e-09 37.1 52.1 8 10 0.056 50 4.1 0.7 6 16 375 385 374 397 0.85 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF239-205 - 458 2.5e-09 37.1 52.1 9 10 8.1e-05 0.072 13.2 2.4 6 34 403 438 402 442 0.92 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF239-205 - 458 2.5e-09 37.1 52.1 10 10 0.0067 6 7.1 0.4 6 17 431 442 429 454 0.83 Zinc ribbon domain XPA_N PF01286.18 32 ZNF239-205 - 458 2.3e-08 33.9 41.8 1 10 7.9 7.1e+03 -2.8 0.0 6 14 183 191 182 191 0.83 XPA protein N-terminal XPA_N PF01286.18 32 ZNF239-205 - 458 2.3e-08 33.9 41.8 2 10 0.016 14 5.8 0.8 3 14 208 219 206 222 0.92 XPA protein N-terminal XPA_N PF01286.18 32 ZNF239-205 - 458 2.3e-08 33.9 41.8 3 10 0.0063 5.6 7.1 0.2 3 14 236 247 234 250 0.91 XPA protein N-terminal XPA_N PF01286.18 32 ZNF239-205 - 458 2.3e-08 33.9 41.8 4 10 0.0026 2.4 8.3 0.1 3 14 264 275 262 279 0.90 XPA protein N-terminal XPA_N PF01286.18 32 ZNF239-205 - 458 2.3e-08 33.9 41.8 5 10 0.0019 1.7 8.8 0.3 3 14 292 303 290 306 0.91 XPA protein N-terminal XPA_N PF01286.18 32 ZNF239-205 - 458 2.3e-08 33.9 41.8 6 10 0.059 53 4.0 0.3 3 12 320 329 318 331 0.86 XPA protein N-terminal XPA_N PF01286.18 32 ZNF239-205 - 458 2.3e-08 33.9 41.8 7 10 0.0062 5.6 7.1 0.1 3 14 348 359 346 364 0.92 XPA protein N-terminal XPA_N PF01286.18 32 ZNF239-205 - 458 2.3e-08 33.9 41.8 8 10 0.01 9.1 6.4 0.2 3 14 376 387 374 388 0.91 XPA protein N-terminal XPA_N PF01286.18 32 ZNF239-205 - 458 2.3e-08 33.9 41.8 9 10 0.021 19 5.4 0.1 3 14 404 415 402 420 0.89 XPA protein N-terminal XPA_N PF01286.18 32 ZNF239-205 - 458 2.3e-08 33.9 41.8 10 10 0.015 13 5.9 0.5 3 14 432 443 430 444 0.91 XPA protein N-terminal CpXC PF14353.6 118 ZNF239-205 - 458 1.2e-07 31.8 27.4 1 10 2.2 2e+03 -1.2 0.0 65 99 95 128 68 134 0.63 CpXC protein CpXC PF14353.6 118 ZNF239-205 - 458 1.2e-07 31.8 27.4 2 10 0.0019 1.7 8.7 0.1 37 60 206 229 186 235 0.87 CpXC protein CpXC PF14353.6 118 ZNF239-205 - 458 1.2e-07 31.8 27.4 3 10 0.0061 5.5 7.1 0.0 38 59 235 256 231 261 0.90 CpXC protein CpXC PF14353.6 118 ZNF239-205 - 458 1.2e-07 31.8 27.4 4 10 0.013 12 6.0 0.1 38 58 263 283 257 287 0.89 CpXC protein CpXC PF14353.6 118 ZNF239-205 - 458 1.2e-07 31.8 27.4 5 10 0.029 26 4.9 0.1 38 58 291 311 289 315 0.88 CpXC protein CpXC PF14353.6 118 ZNF239-205 - 458 1.2e-07 31.8 27.4 6 10 0.049 44 4.1 0.1 38 58 319 339 312 344 0.89 CpXC protein CpXC PF14353.6 118 ZNF239-205 - 458 1.2e-07 31.8 27.4 7 10 0.39 3.5e+02 1.2 0.1 38 57 347 366 340 372 0.88 CpXC protein CpXC PF14353.6 118 ZNF239-205 - 458 1.2e-07 31.8 27.4 8 10 0.3 2.7e+02 1.6 0.1 38 56 375 393 372 398 0.86 CpXC protein CpXC PF14353.6 118 ZNF239-205 - 458 1.2e-07 31.8 27.4 9 10 0.019 17 5.5 0.0 38 59 403 424 400 427 0.90 CpXC protein CpXC PF14353.6 118 ZNF239-205 - 458 1.2e-07 31.8 27.4 10 10 0.038 34 4.5 0.1 38 60 431 453 429 455 0.88 CpXC protein # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF239-205.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF239-205.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF239-205.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF239-205.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF239-205.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:02:17 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- SCAN PF02023.17 90 ZNF24-201 - 368 8.1e-43 144.2 0.8 1 1 2.8e-45 1.9e-42 143.0 0.8 1 89 48 136 48 137 0.98 SCAN domain zf-H2C2_2 PF13465.6 26 ZNF24-201 - 368 6.3e-26 89.6 18.8 1 6 8.1 5.3e+03 -1.8 0.1 7 13 113 119 112 120 0.85 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF24-201 - 368 6.3e-26 89.6 18.8 2 6 0.07 47 4.7 0.2 13 25 249 261 244 262 0.82 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF24-201 - 368 6.3e-26 89.6 18.8 3 6 6.7e-08 4.5e-05 23.7 0.0 2 25 266 289 265 290 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF24-201 - 368 6.3e-26 89.6 18.8 4 6 1.6e-11 1.1e-08 35.1 0.3 2 25 294 317 294 318 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF24-201 - 368 6.3e-26 89.6 18.8 5 6 2.4e-10 1.6e-07 31.4 0.1 2 25 322 345 321 346 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF24-201 - 368 6.3e-26 89.6 18.8 6 6 0.076 50 4.6 0.2 1 13 349 361 349 365 0.87 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZNF24-201 - 368 6.4e-24 83.0 18.3 1 4 1.7e-06 0.0011 19.2 0.8 1 23 251 273 251 273 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF24-201 - 368 6.4e-24 83.0 18.3 2 4 2.2e-06 0.0015 18.9 0.1 3 23 281 301 279 301 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF24-201 - 368 6.4e-24 83.0 18.3 3 4 1e-08 6.8e-06 26.2 0.2 1 23 307 329 307 329 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF24-201 - 368 6.4e-24 83.0 18.3 4 4 2.1e-09 1.4e-06 28.4 1.9 1 23 335 357 335 357 0.99 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZNF24-201 - 368 4.7e-13 48.8 18.6 1 4 0.00048 0.32 12.0 0.8 1 23 251 273 251 274 0.90 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF24-201 - 368 4.7e-13 48.8 18.6 2 4 0.00054 0.36 11.8 0.2 2 23 280 301 279 302 0.87 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF24-201 - 368 4.7e-13 48.8 18.6 3 4 1.4e-05 0.009 16.8 0.2 1 23 307 329 307 330 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF24-201 - 368 4.7e-13 48.8 18.6 4 4 2.9e-06 0.0019 18.9 1.4 1 23 335 357 335 358 0.96 C2H2-type zinc finger zf-C2H2_jaz PF12171.8 27 ZNF24-201 - 368 9.6e-07 28.9 6.0 1 4 0.0029 2 8.8 0.2 1 21 250 270 250 271 0.83 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF24-201 - 368 9.6e-07 28.9 6.0 2 4 0.0014 0.95 9.8 0.0 4 22 281 299 278 299 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF24-201 - 368 9.6e-07 28.9 6.0 3 4 0.014 9.4 6.7 0.0 2 22 307 327 306 327 0.90 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF24-201 - 368 9.6e-07 28.9 6.0 4 4 0.1 70 3.9 0.2 2 17 335 350 334 355 0.77 Zinc-finger double-stranded RNA-binding # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF24-201.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF24-201.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF24-201.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF24-201.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF24-201.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:02:18 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- SCAN PF02023.17 90 ZNF24-202 - 368 8.1e-43 144.2 0.8 1 1 2.8e-45 1.9e-42 143.0 0.8 1 89 48 136 48 137 0.98 SCAN domain zf-H2C2_2 PF13465.6 26 ZNF24-202 - 368 6.3e-26 89.6 18.8 1 6 8.1 5.3e+03 -1.8 0.1 7 13 113 119 112 120 0.85 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF24-202 - 368 6.3e-26 89.6 18.8 2 6 0.07 47 4.7 0.2 13 25 249 261 244 262 0.82 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF24-202 - 368 6.3e-26 89.6 18.8 3 6 6.7e-08 4.5e-05 23.7 0.0 2 25 266 289 265 290 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF24-202 - 368 6.3e-26 89.6 18.8 4 6 1.6e-11 1.1e-08 35.1 0.3 2 25 294 317 294 318 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF24-202 - 368 6.3e-26 89.6 18.8 5 6 2.4e-10 1.6e-07 31.4 0.1 2 25 322 345 321 346 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF24-202 - 368 6.3e-26 89.6 18.8 6 6 0.076 50 4.6 0.2 1 13 349 361 349 365 0.87 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZNF24-202 - 368 6.4e-24 83.0 18.3 1 4 1.7e-06 0.0011 19.2 0.8 1 23 251 273 251 273 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF24-202 - 368 6.4e-24 83.0 18.3 2 4 2.2e-06 0.0015 18.9 0.1 3 23 281 301 279 301 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF24-202 - 368 6.4e-24 83.0 18.3 3 4 1e-08 6.8e-06 26.2 0.2 1 23 307 329 307 329 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF24-202 - 368 6.4e-24 83.0 18.3 4 4 2.1e-09 1.4e-06 28.4 1.9 1 23 335 357 335 357 0.99 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZNF24-202 - 368 4.7e-13 48.8 18.6 1 4 0.00048 0.32 12.0 0.8 1 23 251 273 251 274 0.90 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF24-202 - 368 4.7e-13 48.8 18.6 2 4 0.00054 0.36 11.8 0.2 2 23 280 301 279 302 0.87 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF24-202 - 368 4.7e-13 48.8 18.6 3 4 1.4e-05 0.009 16.8 0.2 1 23 307 329 307 330 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF24-202 - 368 4.7e-13 48.8 18.6 4 4 2.9e-06 0.0019 18.9 1.4 1 23 335 357 335 358 0.96 C2H2-type zinc finger zf-C2H2_jaz PF12171.8 27 ZNF24-202 - 368 9.6e-07 28.9 6.0 1 4 0.0029 2 8.8 0.2 1 21 250 270 250 271 0.83 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF24-202 - 368 9.6e-07 28.9 6.0 2 4 0.0014 0.95 9.8 0.0 4 22 281 299 278 299 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF24-202 - 368 9.6e-07 28.9 6.0 3 4 0.014 9.4 6.7 0.0 2 22 307 327 306 327 0.90 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF24-202 - 368 9.6e-07 28.9 6.0 4 4 0.1 70 3.9 0.2 2 17 335 350 334 355 0.77 Zinc-finger double-stranded RNA-binding # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF24-202.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF24-202.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF24-202.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF24-202.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF24-202.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:02:18 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF24-203.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF24-203.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF24-203.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF24-203.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF24-203.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:02:18 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- SCAN PF02023.17 90 ZNF24-204 - 193 3e-43 145.6 0.8 1 1 8.2e-47 4.9e-43 144.9 0.8 1 89 48 136 48 137 0.98 SCAN domain # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF24-204.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF24-204.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF24-204.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF24-204.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF24-204.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:02:19 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF24-205.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF24-205.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF24-205.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF24-205.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF24-205.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:02:19 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF24-206.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF24-206.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF24-206.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF24-206.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF24-206.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:02:19 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZNF248-201 - 579 1.4e-58 192.9 61.2 1 11 7.4 9.5e+03 -2.6 0.0 17 24 242 251 234 252 0.73 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF248-201 - 579 1.4e-58 192.9 61.2 2 11 0.084 1.1e+02 3.5 0.1 14 24 269 279 261 279 0.85 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF248-201 - 579 1.4e-58 192.9 61.2 3 11 0.34 4.3e+02 1.6 0.0 1 15 338 352 338 355 0.84 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF248-201 - 579 1.4e-58 192.9 61.2 4 11 4.1e-07 0.00053 20.3 0.3 6 25 370 390 364 391 0.83 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF248-201 - 579 1.4e-58 192.9 61.2 5 11 2.8e-12 3.6e-09 36.6 0.6 1 24 394 417 394 417 0.98 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF248-201 - 579 1.4e-58 192.9 61.2 6 11 2.4e-11 3.1e-08 33.7 3.1 1 24 422 445 422 445 0.97 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF248-201 - 579 1.4e-58 192.9 61.2 7 11 2.1e-11 2.7e-08 33.9 1.8 1 24 450 473 450 474 0.98 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF248-201 - 579 1.4e-58 192.9 61.2 8 11 7.7e-09 9.8e-06 25.8 0.2 1 24 478 501 478 501 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF248-201 - 579 1.4e-58 192.9 61.2 9 11 7.5e-11 9.6e-08 32.1 0.7 1 24 506 529 506 529 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF248-201 - 579 1.4e-58 192.9 61.2 10 11 6.7e-13 8.6e-10 38.6 0.7 1 25 534 558 534 559 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF248-201 - 579 1.4e-58 192.9 61.2 11 11 0.087 1.1e+02 3.5 0.3 2 13 563 574 563 576 0.85 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZNF248-201 - 579 5.9e-40 133.5 85.0 1 12 0.12 1.5e+02 3.1 0.1 2 11 241 252 240 258 0.85 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF248-201 - 579 5.9e-40 133.5 85.0 2 12 0.048 61 4.4 1.8 3 11 272 280 270 282 0.90 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF248-201 - 579 5.9e-40 133.5 85.0 3 12 2.9 3.7e+03 -1.2 0.0 8 20 304 316 303 316 0.87 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF248-201 - 579 5.9e-40 133.5 85.0 4 12 1.2 1.6e+03 -0.1 0.2 13 23 336 346 335 346 0.90 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF248-201 - 579 5.9e-40 133.5 85.0 5 12 6.5 8.3e+03 -2.4 0.1 10 17 361 368 360 369 0.85 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF248-201 - 579 5.9e-40 133.5 85.0 6 12 8.9e-08 0.00011 22.4 0.4 1 23 380 402 380 402 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF248-201 - 579 5.9e-40 133.5 85.0 7 12 2.6e-08 3.3e-05 24.1 4.1 1 23 408 430 408 430 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF248-201 - 579 5.9e-40 133.5 85.0 8 12 1.1e-08 1.4e-05 25.2 3.5 1 23 436 458 436 458 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF248-201 - 579 5.9e-40 133.5 85.0 9 12 2.3e-08 2.9e-05 24.3 3.8 1 23 464 486 464 486 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF248-201 - 579 5.9e-40 133.5 85.0 10 12 2.6e-09 3.3e-06 27.2 1.5 1 23 492 514 492 514 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF248-201 - 579 5.9e-40 133.5 85.0 11 12 4e-09 5.2e-06 26.6 3.7 1 23 520 542 520 542 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF248-201 - 579 5.9e-40 133.5 85.0 12 12 2.5e-08 3.3e-05 24.1 0.7 1 23 548 570 548 570 0.98 Zinc finger, C2H2 type KRAB PF01352.27 42 ZNF248-201 - 579 8.1e-24 83.0 0.2 1 1 1.5e-26 2e-23 81.8 0.2 2 42 8 48 7 48 0.98 KRAB box zf-C2H2_4 PF13894.6 24 ZNF248-201 - 579 5.8e-23 79.6 75.5 1 11 3 3.9e+03 -0.8 0.0 2 15 139 152 138 154 0.78 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF248-201 - 579 5.8e-23 79.6 75.5 2 11 0.54 6.9e+02 1.6 0.1 2 13 241 254 240 259 0.78 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF248-201 - 579 5.8e-23 79.6 75.5 3 11 0.0091 12 7.1 0.6 2 12 271 281 270 291 0.71 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF248-201 - 579 5.8e-23 79.6 75.5 4 11 2.6 3.3e+03 -0.5 0.1 12 23 335 346 331 347 0.79 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF248-201 - 579 5.8e-23 79.6 75.5 5 11 3.2e-06 0.004 17.9 0.5 1 23 380 402 380 403 0.97 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF248-201 - 579 5.8e-23 79.6 75.5 6 11 1.3e-05 0.017 15.9 3.4 1 23 408 430 408 431 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF248-201 - 579 5.8e-23 79.6 75.5 7 11 6.6e-06 0.0085 16.9 2.9 1 23 436 458 436 459 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF248-201 - 579 5.8e-23 79.6 75.5 8 11 0.00014 0.17 12.8 3.4 1 23 464 486 464 487 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF248-201 - 579 5.8e-23 79.6 75.5 9 11 6.8e-06 0.0087 16.8 1.5 1 23 492 514 492 515 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF248-201 - 579 5.8e-23 79.6 75.5 10 11 1.2e-06 0.0015 19.2 3.0 1 23 520 542 520 543 0.97 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF248-201 - 579 5.8e-23 79.6 75.5 11 11 3.8e-05 0.049 14.5 0.6 1 23 548 570 548 571 0.89 C2H2-type zinc finger zf-AN1 PF01428.16 40 ZNF248-201 - 579 7.2e-07 29.3 72.1 1 8 0.0058 7.4 6.8 2.6 11 26 267 282 242 288 0.80 AN1-like Zinc finger zf-AN1 PF01428.16 40 ZNF248-201 - 579 7.2e-07 29.3 72.1 2 8 0.077 98 3.2 0.4 13 23 379 389 371 398 0.85 AN1-like Zinc finger zf-AN1 PF01428.16 40 ZNF248-201 - 579 7.2e-07 29.3 72.1 3 8 0.0011 1.4 9.2 3.9 12 26 406 420 397 430 0.80 AN1-like Zinc finger zf-AN1 PF01428.16 40 ZNF248-201 - 579 7.2e-07 29.3 72.1 4 8 0.00021 0.27 11.5 3.3 12 26 434 448 424 456 0.81 AN1-like Zinc finger zf-AN1 PF01428.16 40 ZNF248-201 - 579 7.2e-07 29.3 72.1 5 8 0.00063 0.8 9.9 3.2 12 26 462 476 454 482 0.84 AN1-like Zinc finger zf-AN1 PF01428.16 40 ZNF248-201 - 579 7.2e-07 29.3 72.1 6 8 0.00028 0.36 11.0 2.2 12 26 490 504 482 508 0.85 AN1-like Zinc finger zf-AN1 PF01428.16 40 ZNF248-201 - 579 7.2e-07 29.3 72.1 7 8 7.5e-05 0.096 12.9 2.7 12 26 518 532 510 539 0.83 AN1-like Zinc finger zf-AN1 PF01428.16 40 ZNF248-201 - 579 7.2e-07 29.3 72.1 8 8 0.018 22 5.3 0.5 12 23 546 557 535 560 0.84 AN1-like Zinc finger # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF248-201.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF248-201.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF248-201.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF248-201.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF248-201.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:02:20 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- KRAB PF01352.27 42 ZNF248-202 - 119 8.6e-25 86.1 0.2 1 1 9e-29 1.6e-24 85.2 0.2 2 42 8 48 7 48 0.98 KRAB box # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF248-202.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF248-202.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF248-202.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF248-202.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF248-202.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:02:20 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZNF248-203 - 579 1.4e-58 192.9 61.2 1 11 7.4 9.5e+03 -2.6 0.0 17 24 242 251 234 252 0.73 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF248-203 - 579 1.4e-58 192.9 61.2 2 11 0.084 1.1e+02 3.5 0.1 14 24 269 279 261 279 0.85 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF248-203 - 579 1.4e-58 192.9 61.2 3 11 0.34 4.3e+02 1.6 0.0 1 15 338 352 338 355 0.84 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF248-203 - 579 1.4e-58 192.9 61.2 4 11 4.1e-07 0.00053 20.3 0.3 6 25 370 390 364 391 0.83 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF248-203 - 579 1.4e-58 192.9 61.2 5 11 2.8e-12 3.6e-09 36.6 0.6 1 24 394 417 394 417 0.98 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF248-203 - 579 1.4e-58 192.9 61.2 6 11 2.4e-11 3.1e-08 33.7 3.1 1 24 422 445 422 445 0.97 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF248-203 - 579 1.4e-58 192.9 61.2 7 11 2.1e-11 2.7e-08 33.9 1.8 1 24 450 473 450 474 0.98 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF248-203 - 579 1.4e-58 192.9 61.2 8 11 7.7e-09 9.8e-06 25.8 0.2 1 24 478 501 478 501 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF248-203 - 579 1.4e-58 192.9 61.2 9 11 7.5e-11 9.6e-08 32.1 0.7 1 24 506 529 506 529 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF248-203 - 579 1.4e-58 192.9 61.2 10 11 6.7e-13 8.6e-10 38.6 0.7 1 25 534 558 534 559 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF248-203 - 579 1.4e-58 192.9 61.2 11 11 0.087 1.1e+02 3.5 0.3 2 13 563 574 563 576 0.85 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZNF248-203 - 579 5.9e-40 133.5 85.0 1 12 0.12 1.5e+02 3.1 0.1 2 11 241 252 240 258 0.85 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF248-203 - 579 5.9e-40 133.5 85.0 2 12 0.048 61 4.4 1.8 3 11 272 280 270 282 0.90 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF248-203 - 579 5.9e-40 133.5 85.0 3 12 2.9 3.7e+03 -1.2 0.0 8 20 304 316 303 316 0.87 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF248-203 - 579 5.9e-40 133.5 85.0 4 12 1.2 1.6e+03 -0.1 0.2 13 23 336 346 335 346 0.90 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF248-203 - 579 5.9e-40 133.5 85.0 5 12 6.5 8.3e+03 -2.4 0.1 10 17 361 368 360 369 0.85 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF248-203 - 579 5.9e-40 133.5 85.0 6 12 8.9e-08 0.00011 22.4 0.4 1 23 380 402 380 402 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF248-203 - 579 5.9e-40 133.5 85.0 7 12 2.6e-08 3.3e-05 24.1 4.1 1 23 408 430 408 430 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF248-203 - 579 5.9e-40 133.5 85.0 8 12 1.1e-08 1.4e-05 25.2 3.5 1 23 436 458 436 458 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF248-203 - 579 5.9e-40 133.5 85.0 9 12 2.3e-08 2.9e-05 24.3 3.8 1 23 464 486 464 486 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF248-203 - 579 5.9e-40 133.5 85.0 10 12 2.6e-09 3.3e-06 27.2 1.5 1 23 492 514 492 514 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF248-203 - 579 5.9e-40 133.5 85.0 11 12 4e-09 5.2e-06 26.6 3.7 1 23 520 542 520 542 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF248-203 - 579 5.9e-40 133.5 85.0 12 12 2.5e-08 3.3e-05 24.1 0.7 1 23 548 570 548 570 0.98 Zinc finger, C2H2 type KRAB PF01352.27 42 ZNF248-203 - 579 8.1e-24 83.0 0.2 1 1 1.5e-26 2e-23 81.8 0.2 2 42 8 48 7 48 0.98 KRAB box zf-C2H2_4 PF13894.6 24 ZNF248-203 - 579 5.8e-23 79.6 75.5 1 11 3 3.9e+03 -0.8 0.0 2 15 139 152 138 154 0.78 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF248-203 - 579 5.8e-23 79.6 75.5 2 11 0.54 6.9e+02 1.6 0.1 2 13 241 254 240 259 0.78 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF248-203 - 579 5.8e-23 79.6 75.5 3 11 0.0091 12 7.1 0.6 2 12 271 281 270 291 0.71 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF248-203 - 579 5.8e-23 79.6 75.5 4 11 2.6 3.3e+03 -0.5 0.1 12 23 335 346 331 347 0.79 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF248-203 - 579 5.8e-23 79.6 75.5 5 11 3.2e-06 0.004 17.9 0.5 1 23 380 402 380 403 0.97 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF248-203 - 579 5.8e-23 79.6 75.5 6 11 1.3e-05 0.017 15.9 3.4 1 23 408 430 408 431 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF248-203 - 579 5.8e-23 79.6 75.5 7 11 6.6e-06 0.0085 16.9 2.9 1 23 436 458 436 459 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF248-203 - 579 5.8e-23 79.6 75.5 8 11 0.00014 0.17 12.8 3.4 1 23 464 486 464 487 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF248-203 - 579 5.8e-23 79.6 75.5 9 11 6.8e-06 0.0087 16.8 1.5 1 23 492 514 492 515 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF248-203 - 579 5.8e-23 79.6 75.5 10 11 1.2e-06 0.0015 19.2 3.0 1 23 520 542 520 543 0.97 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF248-203 - 579 5.8e-23 79.6 75.5 11 11 3.8e-05 0.049 14.5 0.6 1 23 548 570 548 571 0.89 C2H2-type zinc finger zf-AN1 PF01428.16 40 ZNF248-203 - 579 7.2e-07 29.3 72.1 1 8 0.0058 7.4 6.8 2.6 11 26 267 282 242 288 0.80 AN1-like Zinc finger zf-AN1 PF01428.16 40 ZNF248-203 - 579 7.2e-07 29.3 72.1 2 8 0.077 98 3.2 0.4 13 23 379 389 371 398 0.85 AN1-like Zinc finger zf-AN1 PF01428.16 40 ZNF248-203 - 579 7.2e-07 29.3 72.1 3 8 0.0011 1.4 9.2 3.9 12 26 406 420 397 430 0.80 AN1-like Zinc finger zf-AN1 PF01428.16 40 ZNF248-203 - 579 7.2e-07 29.3 72.1 4 8 0.00021 0.27 11.5 3.3 12 26 434 448 424 456 0.81 AN1-like Zinc finger zf-AN1 PF01428.16 40 ZNF248-203 - 579 7.2e-07 29.3 72.1 5 8 0.00063 0.8 9.9 3.2 12 26 462 476 454 482 0.84 AN1-like Zinc finger zf-AN1 PF01428.16 40 ZNF248-203 - 579 7.2e-07 29.3 72.1 6 8 0.00028 0.36 11.0 2.2 12 26 490 504 482 508 0.85 AN1-like Zinc finger zf-AN1 PF01428.16 40 ZNF248-203 - 579 7.2e-07 29.3 72.1 7 8 7.5e-05 0.096 12.9 2.7 12 26 518 532 510 539 0.83 AN1-like Zinc finger zf-AN1 PF01428.16 40 ZNF248-203 - 579 7.2e-07 29.3 72.1 8 8 0.018 22 5.3 0.5 12 23 546 557 535 560 0.84 AN1-like Zinc finger # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF248-203.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF248-203.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF248-203.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF248-203.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF248-203.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:02:21 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF248-204.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF248-204.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF248-204.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF248-204.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF248-204.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:02:21 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF248-205.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF248-205.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF248-205.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF248-205.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF248-205.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:02:21 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- KRAB PF01352.27 42 ZNF248-206 - 111 7.4e-25 86.3 0.2 1 1 7.8e-29 1.4e-24 85.5 0.2 2 42 8 48 7 48 0.98 KRAB box # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF248-206.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF248-206.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF248-206.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF248-206.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF248-206.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:02:22 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF248-207.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF248-207.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF248-207.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF248-207.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF248-207.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:02:22 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- KRAB PF01352.27 42 ZNF248-208 - 119 8.6e-25 86.1 0.2 1 1 9e-29 1.6e-24 85.2 0.2 2 42 8 48 7 48 0.98 KRAB box # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF248-208.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF248-208.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF248-208.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF248-208.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF248-208.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:02:22 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- KRAB PF01352.27 42 ZNF248-209 - 122 1.3e-24 85.6 1.0 1 2 9.5e-29 1.7e-24 85.2 0.2 2 42 8 48 7 48 0.98 KRAB box KRAB PF01352.27 42 ZNF248-209 - 122 1.3e-24 85.6 1.0 2 2 0.3 5.5e+03 -2.9 0.0 16 26 101 111 101 111 0.78 KRAB box # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF248-209.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF248-209.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF248-209.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF248-209.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF248-209.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:02:23 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZNF250-201 - 560 1.5e-102 331.9 93.1 1 14 0.0022 2 9.0 0.6 10 25 194 209 187 210 0.85 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF250-201 - 560 1.5e-102 331.9 93.1 2 14 2e-11 1.8e-08 34.4 0.3 1 25 213 237 213 238 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF250-201 - 560 1.5e-102 331.9 93.1 3 14 1.1e-11 9.4e-09 35.3 0.6 2 24 242 264 241 265 0.97 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF250-201 - 560 1.5e-102 331.9 93.1 4 14 1.4e-09 1.2e-06 28.6 1.8 2 25 270 293 269 294 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF250-201 - 560 1.5e-102 331.9 93.1 5 14 5.7e-12 5.1e-09 36.1 0.8 1 26 297 322 297 322 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF250-201 - 560 1.5e-102 331.9 93.1 6 14 5.4e-11 4.9e-08 33.1 1.3 2 25 326 349 325 349 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF250-201 - 560 1.5e-102 331.9 93.1 7 14 1.8e-11 1.6e-08 34.6 0.2 3 25 355 377 354 378 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF250-201 - 560 1.5e-102 331.9 93.1 8 14 8.1e-10 7.3e-07 29.3 2.4 4 26 384 406 382 406 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF250-201 - 560 1.5e-102 331.9 93.1 9 14 1.1e-09 9.6e-07 29.0 0.3 2 25 410 433 409 434 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF250-201 - 560 1.5e-102 331.9 93.1 10 14 3.5e-09 3.1e-06 27.3 0.5 1 25 437 461 437 462 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF250-201 - 560 1.5e-102 331.9 93.1 11 14 4.4e-11 3.9e-08 33.4 0.2 2 25 466 489 465 489 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF250-201 - 560 1.5e-102 331.9 93.1 12 14 2.2e-11 2e-08 34.3 0.2 5 25 497 517 494 518 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF250-201 - 560 1.5e-102 331.9 93.1 13 14 3.9e-10 3.5e-07 30.3 0.1 3 25 523 545 522 546 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF250-201 - 560 1.5e-102 331.9 93.1 14 14 6.5 5.8e+03 -2.0 1.5 1 10 549 558 549 559 0.83 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZNF250-201 - 560 1.3e-68 223.8 95.8 1 13 9.9e-08 8.8e-05 22.7 3.4 1 23 199 221 199 221 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF250-201 - 560 1.3e-68 223.8 95.8 2 13 5.2e-08 4.7e-05 23.6 0.4 1 23 227 249 227 249 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF250-201 - 560 1.3e-68 223.8 95.8 3 13 1.1e-07 0.0001 22.5 0.5 1 23 255 277 255 277 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF250-201 - 560 1.3e-68 223.8 95.8 4 13 1.2e-06 0.001 19.4 2.6 1 23 283 305 283 305 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF250-201 - 560 1.3e-68 223.8 95.8 5 13 8.4e-08 7.5e-05 23.0 1.0 1 23 311 333 311 333 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF250-201 - 560 1.3e-68 223.8 95.8 6 13 5.1e-07 0.00046 20.5 2.5 1 23 339 361 339 361 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF250-201 - 560 1.3e-68 223.8 95.8 7 13 3.8e-07 0.00034 20.9 0.7 1 23 367 389 367 389 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF250-201 - 560 1.3e-68 223.8 95.8 8 13 3.3e-08 2.9e-05 24.3 2.1 1 23 395 417 395 417 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF250-201 - 560 1.3e-68 223.8 95.8 9 13 1.5e-07 0.00014 22.1 1.8 1 23 423 445 423 445 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF250-201 - 560 1.3e-68 223.8 95.8 10 13 1.9e-06 0.0017 18.7 0.2 1 23 451 473 451 473 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF250-201 - 560 1.3e-68 223.8 95.8 11 13 7e-08 6.3e-05 23.2 0.2 1 23 479 501 479 501 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF250-201 - 560 1.3e-68 223.8 95.8 12 13 5.1e-07 0.00046 20.5 0.3 1 23 507 529 507 529 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF250-201 - 560 1.3e-68 223.8 95.8 13 13 8.6e-08 7.7e-05 22.9 0.9 1 23 535 557 535 557 0.98 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZNF250-201 - 560 4.2e-36 120.5 95.5 1 13 0.00032 0.28 12.1 3.1 1 23 199 221 199 222 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF250-201 - 560 4.2e-36 120.5 95.5 2 13 1.2e-05 0.011 16.5 0.6 1 23 227 249 227 250 0.89 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF250-201 - 560 4.2e-36 120.5 95.5 3 13 0.00012 0.11 13.4 0.5 1 23 255 277 255 278 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF250-201 - 560 4.2e-36 120.5 95.5 4 13 0.0021 1.8 9.6 2.3 1 23 283 305 283 306 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF250-201 - 560 4.2e-36 120.5 95.5 5 13 4.2e-05 0.037 14.8 1.0 1 23 311 333 311 334 0.83 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF250-201 - 560 4.2e-36 120.5 95.5 6 13 1.6e-05 0.015 16.1 1.7 1 23 339 361 339 362 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF250-201 - 560 4.2e-36 120.5 95.5 7 13 0.00012 0.11 13.4 0.7 1 23 367 389 367 390 0.91 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF250-201 - 560 4.2e-36 120.5 95.5 8 13 1.1e-05 0.0097 16.7 1.4 1 23 395 417 395 418 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF250-201 - 560 4.2e-36 120.5 95.5 9 13 0.00026 0.24 12.4 1.9 1 23 423 445 423 446 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF250-201 - 560 4.2e-36 120.5 95.5 10 13 0.0013 1.2 10.2 0.3 1 23 451 473 451 474 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF250-201 - 560 4.2e-36 120.5 95.5 11 13 2.1e-06 0.0019 18.9 0.3 1 23 479 501 479 502 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF250-201 - 560 4.2e-36 120.5 95.5 12 13 6.9e-05 0.062 14.2 0.3 1 23 507 529 507 530 0.89 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF250-201 - 560 4.2e-36 120.5 95.5 13 13 7.4e-05 0.066 14.1 1.1 1 23 535 557 535 558 0.94 C2H2-type zinc finger KRAB PF01352.27 42 ZNF250-201 - 560 1.8e-19 69.1 0.1 1 1 3.3e-22 3e-19 68.4 0.1 2 42 22 62 21 62 0.98 KRAB box Zn-ribbon_8 PF09723.10 40 ZNF250-201 - 560 2.3e-15 56.4 54.1 1 9 0.0029 2.6 8.2 1.8 6 35 199 235 198 239 0.89 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF250-201 - 560 2.3e-15 56.4 54.1 2 9 0.00057 0.51 10.5 3.4 6 36 255 292 254 296 0.86 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF250-201 - 560 2.3e-15 56.4 54.1 3 9 0.00066 0.59 10.3 0.8 7 34 284 318 283 323 0.88 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF250-201 - 560 2.3e-15 56.4 54.1 4 9 2.1e-05 0.019 15.1 0.5 6 37 311 351 310 354 0.85 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF250-201 - 560 2.3e-15 56.4 54.1 5 9 1.6e-05 0.015 15.4 1.7 7 35 340 375 338 381 0.89 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF250-201 - 560 2.3e-15 56.4 54.1 6 9 4.2e-05 0.038 14.1 2.6 6 35 395 431 394 436 0.78 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF250-201 - 560 2.3e-15 56.4 54.1 7 9 0.00027 0.25 11.5 3.2 6 34 451 486 450 489 0.71 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF250-201 - 560 2.3e-15 56.4 54.1 8 9 0.019 17 5.6 0.2 6 16 479 489 478 506 0.85 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF250-201 - 560 2.3e-15 56.4 54.1 9 9 2.5e-05 0.023 14.8 2.5 6 35 507 543 506 547 0.91 Zinc ribbon domain zf-C2H2_jaz PF12171.8 27 ZNF250-201 - 560 3.2e-14 52.8 42.2 1 12 0.0094 8.5 6.8 0.2 2 22 199 219 198 219 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF250-201 - 560 3.2e-14 52.8 42.2 2 12 0.014 13 6.2 0.0 2 21 227 246 226 247 0.91 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF250-201 - 560 3.2e-14 52.8 42.2 3 12 0.27 2.4e+02 2.2 0.2 2 20 255 273 254 274 0.84 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF250-201 - 560 3.2e-14 52.8 42.2 4 12 0.082 73 3.8 0.3 2 20 283 301 282 303 0.77 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF250-201 - 560 3.2e-14 52.8 42.2 5 12 0.00016 0.14 12.5 0.0 2 22 311 331 310 331 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF250-201 - 560 3.2e-14 52.8 42.2 6 12 0.0084 7.5 7.0 0.1 2 22 339 359 338 359 0.91 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF250-201 - 560 3.2e-14 52.8 42.2 7 12 0.0023 2 8.8 0.1 2 20 367 385 366 387 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF250-201 - 560 3.2e-14 52.8 42.2 8 12 2.6e-05 0.023 15.0 0.1 2 22 395 415 394 415 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF250-201 - 560 3.2e-14 52.8 42.2 9 12 0.12 1.1e+02 3.3 0.7 2 22 423 443 422 443 0.90 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF250-201 - 560 3.2e-14 52.8 42.2 10 12 0.044 40 4.7 0.0 2 24 479 501 478 501 0.89 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF250-201 - 560 3.2e-14 52.8 42.2 11 12 0.49 4.4e+02 1.3 0.2 2 21 507 526 506 527 0.83 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF250-201 - 560 3.2e-14 52.8 42.2 12 12 0.088 79 3.7 0.1 2 22 535 555 534 555 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_6 PF13912.6 27 ZNF250-201 - 560 4.5e-12 45.7 87.0 1 13 2.2 2e+03 -1.1 1.2 3 12 200 209 199 211 0.82 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF250-201 - 560 4.5e-12 45.7 87.0 2 13 0.00012 0.11 12.6 0.5 2 24 227 249 227 252 0.90 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF250-201 - 560 4.5e-12 45.7 87.0 3 13 0.00089 0.8 9.8 0.2 2 12 255 265 255 276 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF250-201 - 560 4.5e-12 45.7 87.0 4 13 0.056 50 4.1 1.5 2 22 283 303 283 307 0.86 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF250-201 - 560 4.5e-12 45.7 87.0 5 13 0.0003 0.27 11.3 0.5 2 24 311 333 311 336 0.92 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF250-201 - 560 4.5e-12 45.7 87.0 6 13 0.00055 0.49 10.5 1.0 2 12 339 349 339 349 0.95 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF250-201 - 560 4.5e-12 45.7 87.0 7 13 0.0023 2.1 8.5 0.2 2 12 367 377 367 385 0.90 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF250-201 - 560 4.5e-12 45.7 87.0 8 13 0.00011 0.1 12.7 0.4 2 12 395 405 395 417 0.90 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF250-201 - 560 4.5e-12 45.7 87.0 9 13 0.57 5.1e+02 0.8 2.5 2 12 423 433 423 445 0.83 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF250-201 - 560 4.5e-12 45.7 87.0 10 13 0.53 4.7e+02 0.9 0.3 2 20 451 469 451 474 0.76 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF250-201 - 560 4.5e-12 45.7 87.0 11 13 0.001 0.91 9.6 0.3 2 24 479 501 479 504 0.78 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF250-201 - 560 4.5e-12 45.7 87.0 12 13 2.3e-05 0.021 14.8 0.5 2 24 507 529 507 532 0.91 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF250-201 - 560 4.5e-12 45.7 87.0 13 13 0.097 87 3.3 3.5 2 26 535 559 535 559 0.85 C2H2-type zinc finger XPA_N PF01286.18 32 ZNF250-201 - 560 1.4e-10 41.0 42.2 1 13 0.027 24 5.1 0.3 3 14 200 211 198 217 0.83 XPA protein N-terminal XPA_N PF01286.18 32 ZNF250-201 - 560 1.4e-10 41.0 42.2 2 13 0.064 57 3.9 0.1 3 14 228 239 226 245 0.83 XPA protein N-terminal XPA_N PF01286.18 32 ZNF250-201 - 560 1.4e-10 41.0 42.2 3 13 0.0071 6.3 6.9 0.1 3 14 256 267 254 268 0.88 XPA protein N-terminal XPA_N PF01286.18 32 ZNF250-201 - 560 1.4e-10 41.0 42.2 4 13 0.016 14 5.8 0.1 3 12 284 293 282 301 0.84 XPA protein N-terminal XPA_N PF01286.18 32 ZNF250-201 - 560 1.4e-10 41.0 42.2 5 13 0.21 1.9e+02 2.2 0.0 3 14 312 323 310 328 0.85 XPA protein N-terminal XPA_N PF01286.18 32 ZNF250-201 - 560 1.4e-10 41.0 42.2 6 13 0.016 14 5.8 0.1 3 12 340 349 338 350 0.87 XPA protein N-terminal XPA_N PF01286.18 32 ZNF250-201 - 560 1.4e-10 41.0 42.2 7 13 0.0022 2 8.6 0.0 3 17 368 383 366 389 0.77 XPA protein N-terminal XPA_N PF01286.18 32 ZNF250-201 - 560 1.4e-10 41.0 42.2 8 13 0.0069 6.2 7.0 0.1 3 17 396 411 394 413 0.73 XPA protein N-terminal XPA_N PF01286.18 32 ZNF250-201 - 560 1.4e-10 41.0 42.2 9 13 0.049 44 4.2 0.0 4 12 425 433 422 441 0.83 XPA protein N-terminal XPA_N PF01286.18 32 ZNF250-201 - 560 1.4e-10 41.0 42.2 10 13 0.22 2e+02 2.1 0.0 3 11 452 460 450 462 0.87 XPA protein N-terminal XPA_N PF01286.18 32 ZNF250-201 - 560 1.4e-10 41.0 42.2 11 13 0.054 48 4.1 0.5 3 11 480 488 479 490 0.89 XPA protein N-terminal XPA_N PF01286.18 32 ZNF250-201 - 560 1.4e-10 41.0 42.2 12 13 0.077 69 3.6 0.0 3 12 508 517 506 525 0.85 XPA protein N-terminal XPA_N PF01286.18 32 ZNF250-201 - 560 1.4e-10 41.0 42.2 13 13 0.15 1.3e+02 2.7 0.1 3 12 536 545 534 546 0.87 XPA protein N-terminal zinc_ribbon_15 PF17032.5 86 ZNF250-201 - 560 7.9e-08 32.9 39.9 1 7 0.018 16 6.4 0.9 37 78 198 239 186 244 0.84 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF250-201 - 560 7.9e-08 32.9 39.9 2 7 0.0041 3.7 8.4 1.4 32 76 249 293 244 298 0.86 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF250-201 - 560 7.9e-08 32.9 39.9 3 7 0.00097 0.87 10.4 0.5 29 76 302 349 293 354 0.83 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF250-201 - 560 7.9e-08 32.9 39.9 4 7 0.00035 0.32 11.8 1.1 31 77 360 406 353 413 0.86 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF250-201 - 560 7.9e-08 32.9 39.9 5 7 0.006 5.4 7.8 0.5 32 76 417 461 411 466 0.84 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF250-201 - 560 7.9e-08 32.9 39.9 6 7 0.00047 0.42 11.4 0.5 30 76 471 517 464 521 0.88 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF250-201 - 560 7.9e-08 32.9 39.9 7 7 0.83 7.4e+02 1.0 0.0 29 52 526 549 519 558 0.67 zinc-ribbon family zf_UBZ PF18439.1 32 ZNF250-201 - 560 3e-07 29.9 57.6 1 13 0.3 2.7e+02 1.3 0.7 3 20 199 217 198 218 0.74 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF250-201 - 560 3e-07 29.9 57.6 2 13 0.012 11 5.7 0.0 3 17 227 241 225 243 0.85 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF250-201 - 560 3e-07 29.9 57.6 3 13 0.0029 2.6 7.7 0.2 3 20 255 273 253 274 0.92 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF250-201 - 560 3e-07 29.9 57.6 4 13 1.6 1.4e+03 -1.0 0.4 4 14 284 294 282 302 0.75 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF250-201 - 560 3e-07 29.9 57.6 5 13 0.018 16 5.2 0.0 3 20 311 329 309 330 0.81 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF250-201 - 560 3e-07 29.9 57.6 6 13 0.0072 6.4 6.5 0.2 4 21 340 358 338 358 0.88 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF250-201 - 560 3e-07 29.9 57.6 7 13 0.00098 0.88 9.2 0.1 3 15 367 379 365 386 0.84 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF250-201 - 560 3e-07 29.9 57.6 8 13 0.0013 1.2 8.8 0.3 3 20 395 413 393 414 0.78 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF250-201 - 560 3e-07 29.9 57.6 9 13 0.044 40 3.9 0.4 3 20 423 441 421 442 0.80 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF250-201 - 560 3e-07 29.9 57.6 10 13 0.0086 7.7 6.2 0.1 3 20 451 469 449 470 0.84 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF250-201 - 560 3e-07 29.9 57.6 11 13 0.018 16 5.2 0.1 3 13 479 489 477 494 0.86 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF250-201 - 560 3e-07 29.9 57.6 12 13 0.16 1.5e+02 2.1 0.1 3 15 507 519 505 526 0.81 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF250-201 - 560 3e-07 29.9 57.6 13 13 0.052 47 3.7 0.4 3 20 535 553 533 554 0.83 Ubiquitin-Binding Zinc Finger # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF250-201.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF250-201.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF250-201.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF250-201.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF250-201.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:02:23 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZNF250-202 - 555 1.3e-102 332.1 93.1 1 14 0.0022 2 9.0 0.6 10 25 189 204 182 205 0.85 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF250-202 - 555 1.3e-102 332.1 93.1 2 14 2e-11 1.8e-08 34.5 0.3 1 25 208 232 208 233 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF250-202 - 555 1.3e-102 332.1 93.1 3 14 1e-11 9.3e-09 35.3 0.6 2 24 237 259 236 260 0.97 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF250-202 - 555 1.3e-102 332.1 93.1 4 14 1.4e-09 1.2e-06 28.6 1.8 2 25 265 288 264 289 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF250-202 - 555 1.3e-102 332.1 93.1 5 14 5.7e-12 5.1e-09 36.2 0.8 1 26 292 317 292 317 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF250-202 - 555 1.3e-102 332.1 93.1 6 14 5.4e-11 4.8e-08 33.1 1.3 2 25 321 344 320 344 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF250-202 - 555 1.3e-102 332.1 93.1 7 14 1.8e-11 1.6e-08 34.6 0.2 3 25 350 372 349 373 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF250-202 - 555 1.3e-102 332.1 93.1 8 14 8e-10 7.2e-07 29.4 2.4 4 26 379 401 377 401 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF250-202 - 555 1.3e-102 332.1 93.1 9 14 1.1e-09 9.5e-07 29.0 0.3 2 25 405 428 404 429 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF250-202 - 555 1.3e-102 332.1 93.1 10 14 3.5e-09 3.1e-06 27.4 0.5 1 25 432 456 432 457 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF250-202 - 555 1.3e-102 332.1 93.1 11 14 4.3e-11 3.9e-08 33.4 0.2 2 25 461 484 460 484 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF250-202 - 555 1.3e-102 332.1 93.1 12 14 2.2e-11 1.9e-08 34.3 0.2 5 25 492 512 489 513 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF250-202 - 555 1.3e-102 332.1 93.1 13 14 3.9e-10 3.5e-07 30.4 0.1 3 25 518 540 517 541 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF250-202 - 555 1.3e-102 332.1 93.1 14 14 6.4 5.7e+03 -1.9 1.5 1 10 544 553 544 554 0.83 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZNF250-202 - 555 1.1e-68 224.0 95.8 1 13 9.8e-08 8.8e-05 22.8 3.4 1 23 194 216 194 216 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF250-202 - 555 1.1e-68 224.0 95.8 2 13 5.1e-08 4.6e-05 23.6 0.4 1 23 222 244 222 244 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF250-202 - 555 1.1e-68 224.0 95.8 3 13 1.1e-07 0.0001 22.6 0.5 1 23 250 272 250 272 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF250-202 - 555 1.1e-68 224.0 95.8 4 13 1.1e-06 0.001 19.4 2.6 1 23 278 300 278 300 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF250-202 - 555 1.1e-68 224.0 95.8 5 13 8.3e-08 7.4e-05 23.0 1.0 1 23 306 328 306 328 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF250-202 - 555 1.1e-68 224.0 95.8 6 13 5e-07 0.00045 20.5 2.5 1 23 334 356 334 356 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF250-202 - 555 1.1e-68 224.0 95.8 7 13 3.8e-07 0.00034 20.9 0.7 1 23 362 384 362 384 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF250-202 - 555 1.1e-68 224.0 95.8 8 13 3.2e-08 2.9e-05 24.3 2.1 1 23 390 412 390 412 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF250-202 - 555 1.1e-68 224.0 95.8 9 13 1.5e-07 0.00014 22.1 1.8 1 23 418 440 418 440 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF250-202 - 555 1.1e-68 224.0 95.8 10 13 1.8e-06 0.0016 18.7 0.2 1 23 446 468 446 468 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF250-202 - 555 1.1e-68 224.0 95.8 11 13 6.9e-08 6.2e-05 23.2 0.2 1 23 474 496 474 496 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF250-202 - 555 1.1e-68 224.0 95.8 12 13 5.1e-07 0.00045 20.5 0.3 1 23 502 524 502 524 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF250-202 - 555 1.1e-68 224.0 95.8 13 13 8.5e-08 7.6e-05 23.0 0.9 1 23 530 552 530 552 0.98 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZNF250-202 - 555 3.7e-36 120.7 95.5 1 13 0.00031 0.28 12.1 3.1 1 23 194 216 194 217 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF250-202 - 555 3.7e-36 120.7 95.5 2 13 1.2e-05 0.011 16.5 0.6 1 23 222 244 222 245 0.89 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF250-202 - 555 3.7e-36 120.7 95.5 3 13 0.00012 0.11 13.4 0.5 1 23 250 272 250 273 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF250-202 - 555 3.7e-36 120.7 95.5 4 13 0.002 1.8 9.6 2.3 1 23 278 300 278 301 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF250-202 - 555 3.7e-36 120.7 95.5 5 13 4.1e-05 0.037 14.9 1.0 1 23 306 328 306 329 0.83 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF250-202 - 555 3.7e-36 120.7 95.5 6 13 1.6e-05 0.014 16.1 1.7 1 23 334 356 334 357 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF250-202 - 555 3.7e-36 120.7 95.5 7 13 0.00012 0.11 13.4 0.7 1 23 362 384 362 385 0.91 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF250-202 - 555 3.7e-36 120.7 95.5 8 13 1.1e-05 0.0096 16.7 1.4 1 23 390 412 390 413 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF250-202 - 555 3.7e-36 120.7 95.5 9 13 0.00026 0.23 12.4 1.9 1 23 418 440 418 441 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF250-202 - 555 3.7e-36 120.7 95.5 10 13 0.0013 1.2 10.2 0.3 1 23 446 468 446 469 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF250-202 - 555 3.7e-36 120.7 95.5 11 13 2.1e-06 0.0019 18.9 0.3 1 23 474 496 474 497 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF250-202 - 555 3.7e-36 120.7 95.5 12 13 6.8e-05 0.061 14.2 0.3 1 23 502 524 502 525 0.89 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF250-202 - 555 3.7e-36 120.7 95.5 13 13 7.3e-05 0.066 14.1 1.1 1 23 530 552 530 553 0.94 C2H2-type zinc finger KRAB PF01352.27 42 ZNF250-202 - 555 1.8e-19 69.1 0.1 1 1 3.3e-22 2.9e-19 68.4 0.1 2 42 17 57 16 57 0.98 KRAB box Zn-ribbon_8 PF09723.10 40 ZNF250-202 - 555 2.3e-15 56.4 54.2 1 9 0.0029 2.6 8.2 1.8 6 35 194 230 193 234 0.89 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF250-202 - 555 2.3e-15 56.4 54.2 2 9 0.00056 0.5 10.5 3.4 6 36 250 287 249 291 0.86 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF250-202 - 555 2.3e-15 56.4 54.2 3 9 0.00066 0.59 10.3 0.8 7 34 279 313 278 318 0.88 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF250-202 - 555 2.3e-15 56.4 54.2 4 9 2.1e-05 0.019 15.1 0.5 6 37 306 346 305 349 0.85 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF250-202 - 555 2.3e-15 56.4 54.2 5 9 1.6e-05 0.014 15.4 1.7 7 35 335 370 333 376 0.89 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF250-202 - 555 2.3e-15 56.4 54.2 6 9 4.2e-05 0.038 14.1 2.6 6 35 390 426 389 431 0.78 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF250-202 - 555 2.3e-15 56.4 54.2 7 9 0.00028 0.25 11.5 3.2 6 34 446 481 445 484 0.71 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF250-202 - 555 2.3e-15 56.4 54.2 8 9 0.019 17 5.6 0.2 6 16 474 484 473 501 0.85 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF250-202 - 555 2.3e-15 56.4 54.2 9 9 2.6e-05 0.023 14.8 2.5 6 35 502 538 501 542 0.91 Zinc ribbon domain zf-C2H2_jaz PF12171.8 27 ZNF250-202 - 555 2.9e-14 52.9 42.2 1 12 0.0093 8.4 6.8 0.2 2 22 194 214 193 214 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF250-202 - 555 2.9e-14 52.9 42.2 2 12 0.014 13 6.3 0.0 2 21 222 241 221 242 0.91 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF250-202 - 555 2.9e-14 52.9 42.2 3 12 0.27 2.4e+02 2.2 0.2 2 20 250 268 249 269 0.84 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF250-202 - 555 2.9e-14 52.9 42.2 4 12 0.081 72 3.8 0.3 2 20 278 296 277 298 0.77 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF250-202 - 555 2.9e-14 52.9 42.2 5 12 0.00015 0.14 12.5 0.0 2 22 306 326 305 326 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF250-202 - 555 2.9e-14 52.9 42.2 6 12 0.0083 7.5 7.0 0.1 2 22 334 354 333 354 0.91 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF250-202 - 555 2.9e-14 52.9 42.2 7 12 0.0022 2 8.8 0.1 2 20 362 380 361 382 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF250-202 - 555 2.9e-14 52.9 42.2 8 12 2.6e-05 0.023 15.0 0.1 2 22 390 410 389 410 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF250-202 - 555 2.9e-14 52.9 42.2 9 12 0.12 1e+02 3.3 0.7 2 22 418 438 417 438 0.90 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF250-202 - 555 2.9e-14 52.9 42.2 10 12 0.044 39 4.7 0.0 2 24 474 496 473 496 0.89 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF250-202 - 555 2.9e-14 52.9 42.2 11 12 0.49 4.4e+02 1.4 0.2 2 21 502 521 501 522 0.83 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF250-202 - 555 2.9e-14 52.9 42.2 12 12 0.087 78 3.7 0.1 2 22 530 550 529 550 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_6 PF13912.6 27 ZNF250-202 - 555 2.4e-12 46.5 86.3 1 13 1.6 1.4e+03 -0.6 0.8 3 12 195 204 194 212 0.86 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF250-202 - 555 2.4e-12 46.5 86.3 2 13 0.00012 0.11 12.6 0.5 2 24 222 244 222 247 0.90 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF250-202 - 555 2.4e-12 46.5 86.3 3 13 0.00088 0.79 9.8 0.2 2 12 250 260 250 271 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF250-202 - 555 2.4e-12 46.5 86.3 4 13 0.055 49 4.1 1.5 2 22 278 298 278 302 0.86 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF250-202 - 555 2.4e-12 46.5 86.3 5 13 0.0003 0.27 11.3 0.5 2 24 306 328 306 331 0.92 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF250-202 - 555 2.4e-12 46.5 86.3 6 13 0.00054 0.49 10.5 1.0 2 12 334 344 334 344 0.95 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF250-202 - 555 2.4e-12 46.5 86.3 7 13 0.0023 2 8.5 0.2 2 12 362 372 362 380 0.90 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF250-202 - 555 2.4e-12 46.5 86.3 8 13 0.00011 0.099 12.7 0.4 2 12 390 400 390 412 0.90 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF250-202 - 555 2.4e-12 46.5 86.3 9 13 0.56 5.1e+02 0.8 2.5 2 12 418 428 418 440 0.83 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF250-202 - 555 2.4e-12 46.5 86.3 10 13 0.52 4.7e+02 1.0 0.3 2 20 446 464 446 469 0.76 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF250-202 - 555 2.4e-12 46.5 86.3 11 13 0.001 0.9 9.6 0.3 2 24 474 496 474 499 0.78 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF250-202 - 555 2.4e-12 46.5 86.3 12 13 2.3e-05 0.02 14.9 0.5 2 24 502 524 502 527 0.91 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF250-202 - 555 2.4e-12 46.5 86.3 13 13 0.096 86 3.3 3.6 2 26 530 554 530 554 0.85 C2H2-type zinc finger XPA_N PF01286.18 32 ZNF250-202 - 555 1.2e-10 41.2 42.2 1 13 0.027 24 5.1 0.3 3 14 195 206 193 212 0.83 XPA protein N-terminal XPA_N PF01286.18 32 ZNF250-202 - 555 1.2e-10 41.2 42.2 2 13 0.063 57 3.9 0.1 3 14 223 234 221 240 0.83 XPA protein N-terminal XPA_N PF01286.18 32 ZNF250-202 - 555 1.2e-10 41.2 42.2 3 13 0.007 6.3 6.9 0.1 3 14 251 262 249 263 0.88 XPA protein N-terminal XPA_N PF01286.18 32 ZNF250-202 - 555 1.2e-10 41.2 42.2 4 13 0.016 14 5.8 0.1 3 12 279 288 277 296 0.84 XPA protein N-terminal XPA_N PF01286.18 32 ZNF250-202 - 555 1.2e-10 41.2 42.2 5 13 0.21 1.8e+02 2.2 0.0 3 14 307 318 305 323 0.85 XPA protein N-terminal XPA_N PF01286.18 32 ZNF250-202 - 555 1.2e-10 41.2 42.2 6 13 0.016 14 5.8 0.1 3 12 335 344 333 345 0.87 XPA protein N-terminal XPA_N PF01286.18 32 ZNF250-202 - 555 1.2e-10 41.2 42.2 7 13 0.0022 1.9 8.6 0.0 3 17 363 378 361 384 0.77 XPA protein N-terminal XPA_N PF01286.18 32 ZNF250-202 - 555 1.2e-10 41.2 42.2 8 13 0.0068 6.1 7.0 0.1 3 17 391 406 389 408 0.73 XPA protein N-terminal XPA_N PF01286.18 32 ZNF250-202 - 555 1.2e-10 41.2 42.2 9 13 0.049 44 4.2 0.0 4 12 420 428 417 436 0.83 XPA protein N-terminal XPA_N PF01286.18 32 ZNF250-202 - 555 1.2e-10 41.2 42.2 10 13 0.22 2e+02 2.1 0.0 3 11 447 455 445 457 0.87 XPA protein N-terminal XPA_N PF01286.18 32 ZNF250-202 - 555 1.2e-10 41.2 42.2 11 13 0.053 48 4.1 0.5 3 11 475 483 474 485 0.89 XPA protein N-terminal XPA_N PF01286.18 32 ZNF250-202 - 555 1.2e-10 41.2 42.2 12 13 0.076 68 3.6 0.0 3 12 503 512 501 520 0.85 XPA protein N-terminal XPA_N PF01286.18 32 ZNF250-202 - 555 1.2e-10 41.2 42.2 13 13 0.14 1.3e+02 2.7 0.1 3 12 531 540 529 541 0.87 XPA protein N-terminal zinc_ribbon_15 PF17032.5 86 ZNF250-202 - 555 7.1e-08 33.1 39.9 1 7 0.017 15 6.4 0.9 37 78 193 234 181 240 0.84 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF250-202 - 555 7.1e-08 33.1 39.9 2 7 0.0041 3.7 8.4 1.4 32 76 244 288 239 293 0.86 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF250-202 - 555 7.1e-08 33.1 39.9 3 7 0.00095 0.86 10.4 0.5 29 76 297 344 288 349 0.83 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF250-202 - 555 7.1e-08 33.1 39.9 4 7 0.00035 0.31 11.8 1.1 31 77 355 401 348 408 0.86 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF250-202 - 555 7.1e-08 33.1 39.9 5 7 0.006 5.3 7.9 0.5 32 76 412 456 406 461 0.84 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF250-202 - 555 7.1e-08 33.1 39.9 6 7 0.00046 0.42 11.4 0.5 30 76 466 512 459 516 0.88 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF250-202 - 555 7.1e-08 33.1 39.9 7 7 0.82 7.3e+02 1.0 0.0 29 52 521 544 514 553 0.67 zinc-ribbon family zf_UBZ PF18439.1 32 ZNF250-202 - 555 2.6e-07 30.1 57.6 1 13 0.29 2.6e+02 1.3 0.7 3 20 194 212 193 213 0.74 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF250-202 - 555 2.6e-07 30.1 57.6 2 13 0.012 11 5.7 0.0 3 17 222 236 220 238 0.85 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF250-202 - 555 2.6e-07 30.1 57.6 3 13 0.0029 2.6 7.7 0.2 3 20 250 268 248 269 0.92 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF250-202 - 555 2.6e-07 30.1 57.6 4 13 1.5 1.4e+03 -1.0 0.4 4 14 279 289 277 297 0.75 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF250-202 - 555 2.6e-07 30.1 57.6 5 13 0.018 16 5.2 0.0 3 20 306 324 304 325 0.81 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF250-202 - 555 2.6e-07 30.1 57.6 6 13 0.0071 6.4 6.5 0.2 4 21 335 353 333 353 0.88 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF250-202 - 555 2.6e-07 30.1 57.6 7 13 0.00097 0.87 9.2 0.1 3 15 362 374 360 381 0.84 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF250-202 - 555 2.6e-07 30.1 57.6 8 13 0.0013 1.2 8.8 0.3 3 20 390 408 388 409 0.78 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF250-202 - 555 2.6e-07 30.1 57.6 9 13 0.044 39 3.9 0.4 3 20 418 436 416 437 0.80 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF250-202 - 555 2.6e-07 30.1 57.6 10 13 0.0086 7.7 6.2 0.1 3 20 446 464 444 465 0.84 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF250-202 - 555 2.6e-07 30.1 57.6 11 13 0.018 16 5.2 0.1 3 13 474 484 472 489 0.86 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF250-202 - 555 2.6e-07 30.1 57.6 12 13 0.16 1.4e+02 2.1 0.1 3 15 502 514 500 521 0.81 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF250-202 - 555 2.6e-07 30.1 57.6 13 13 0.052 46 3.7 0.4 3 20 530 548 528 549 0.83 Ubiquitin-Binding Zinc Finger # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF250-202.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF250-202.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF250-202.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF250-202.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF250-202.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:02:24 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF250-203.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF250-203.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF250-203.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF250-203.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF250-203.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:02:24 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF250-205.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF250-205.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF250-205.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF250-205.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF250-205.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:02:25 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- KRAB PF01352.27 42 ZNF250-206 - 101 1.4e-20 72.6 0.1 1 1 1e-24 1.8e-20 72.3 0.1 2 42 17 57 16 57 0.98 KRAB box # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF250-206.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF250-206.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF250-206.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF250-206.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF250-206.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:02:25 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- KRAB PF01352.27 42 ZNF250-207 - 122 2e-20 72.1 0.1 1 1 1.5e-24 2.7e-20 71.7 0.1 2 42 17 57 16 57 0.98 KRAB box # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF250-207.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF250-207.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF250-207.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF250-207.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF250-207.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:02:25 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF250-208.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF250-208.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF250-208.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF250-208.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF250-208.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:02:26 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- KRAB PF01352.27 42 ZNF250-209 - 127 2.2e-20 72.0 0.1 1 1 1.6e-24 2.9e-20 71.6 0.1 2 42 22 62 21 62 0.98 KRAB box # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF250-209.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF250-209.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF250-209.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF250-209.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF250-209.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:02:26 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF250-210.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF250-210.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF250-210.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF250-210.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF250-210.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:02:26 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZNF25-201 - 456 1.4e-86 281.3 117.3 1 13 2.7e-05 0.028 14.8 4.8 2 24 105 127 104 127 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF25-201 - 456 1.4e-86 281.3 117.3 2 13 5.5e-05 0.058 13.9 1.3 2 25 133 156 132 157 0.87 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF25-201 - 456 1.4e-86 281.3 117.3 3 13 3.7e-07 0.00039 20.7 3.1 1 24 160 183 160 185 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF25-201 - 456 1.4e-86 281.3 117.3 4 13 5.6e-11 5.9e-08 32.8 0.7 1 24 188 211 188 213 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF25-201 - 456 1.4e-86 281.3 117.3 5 13 5.2e-10 5.5e-07 29.7 3.9 1 24 216 239 216 240 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF25-201 - 456 1.4e-86 281.3 117.3 6 13 5.4e-12 5.7e-09 36.0 0.9 2 25 245 268 244 269 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF25-201 - 456 1.4e-86 281.3 117.3 7 13 9.7e-11 1e-07 32.0 3.7 1 25 272 296 272 297 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF25-201 - 456 1.4e-86 281.3 117.3 8 13 1.1e-09 1.2e-06 28.7 7.3 1 24 300 323 300 325 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF25-201 - 456 1.4e-86 281.3 117.3 9 13 2.4e-11 2.5e-08 34.0 1.5 1 24 328 351 328 353 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF25-201 - 456 1.4e-86 281.3 117.3 10 13 8.3e-13 8.7e-10 38.6 1.1 1 25 356 380 356 380 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF25-201 - 456 1.4e-86 281.3 117.3 11 13 1.9e-11 2e-08 34.3 0.8 2 25 385 408 385 409 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF25-201 - 456 1.4e-86 281.3 117.3 12 13 6.6e-10 7e-07 29.4 1.4 5 24 416 435 412 437 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF25-201 - 456 1.4e-86 281.3 117.3 13 13 0.054 57 4.4 0.3 2 13 441 452 440 454 0.89 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZNF25-201 - 456 2.7e-70 229.1 118.5 1 13 0.022 23 5.7 0.3 11 23 100 112 100 112 0.92 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF25-201 - 456 2.7e-70 229.1 118.5 2 13 3.6e-06 0.0038 17.6 5.9 2 23 119 140 118 140 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF25-201 - 456 2.7e-70 229.1 118.5 3 13 8.6e-09 9.1e-06 25.9 0.5 1 23 146 168 146 168 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF25-201 - 456 2.7e-70 229.1 118.5 4 13 2.9e-07 0.00031 21.0 4.1 1 23 174 196 174 196 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF25-201 - 456 2.7e-70 229.1 118.5 5 13 3.2e-07 0.00033 20.9 3.2 1 23 202 224 202 224 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF25-201 - 456 2.7e-70 229.1 118.5 6 13 4.3e-07 0.00045 20.5 0.9 1 23 230 252 230 252 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF25-201 - 456 2.7e-70 229.1 118.5 7 13 3.2e-10 3.4e-07 30.3 2.1 1 23 258 280 258 280 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF25-201 - 456 2.7e-70 229.1 118.5 8 13 3.3e-09 3.5e-06 27.2 5.7 1 23 286 308 286 308 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF25-201 - 456 2.7e-70 229.1 118.5 9 13 4.5e-08 4.7e-05 23.6 4.2 1 23 314 336 314 336 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF25-201 - 456 2.7e-70 229.1 118.5 10 13 4.2e-09 4.5e-06 26.8 3.4 1 23 342 364 342 364 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF25-201 - 456 2.7e-70 229.1 118.5 11 13 6.4e-08 6.7e-05 23.1 0.3 1 23 370 392 370 392 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF25-201 - 456 2.7e-70 229.1 118.5 12 13 5.1e-09 5.4e-06 26.6 2.9 1 23 398 420 398 420 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF25-201 - 456 2.7e-70 229.1 118.5 13 13 5.4e-09 5.6e-06 26.5 0.3 1 23 426 448 426 448 0.99 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZNF25-201 - 456 1.1e-33 113.0 111.7 1 13 0.81 8.5e+02 1.3 0.1 13 23 102 112 99 113 0.79 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF25-201 - 456 1.1e-33 113.0 111.7 2 13 0.0031 3.3 8.8 6.3 2 23 119 140 118 141 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF25-201 - 456 1.1e-33 113.0 111.7 3 13 6.5e-06 0.0069 17.1 0.3 3 23 148 168 146 169 0.91 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF25-201 - 456 1.1e-33 113.0 111.7 4 13 7.5e-05 0.079 13.8 2.7 1 23 174 196 174 197 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF25-201 - 456 1.1e-33 113.0 111.7 5 13 0.00013 0.14 13.1 2.6 1 23 202 224 202 225 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF25-201 - 456 1.1e-33 113.0 111.7 6 13 0.00027 0.29 12.1 1.1 1 23 230 252 230 253 0.85 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF25-201 - 456 1.1e-33 113.0 111.7 7 13 5.2e-06 0.0055 17.4 2.0 1 23 258 280 258 281 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF25-201 - 456 1.1e-33 113.0 111.7 8 13 1.2e-05 0.013 16.3 4.4 1 23 286 308 286 309 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF25-201 - 456 1.1e-33 113.0 111.7 9 13 0.00027 0.28 12.1 3.8 1 23 314 336 314 337 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF25-201 - 456 1.1e-33 113.0 111.7 10 13 1.6e-05 0.017 16.0 2.2 1 23 342 364 342 365 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF25-201 - 456 1.1e-33 113.0 111.7 11 13 3e-05 0.032 15.1 0.4 1 23 370 392 370 393 0.88 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF25-201 - 456 1.1e-33 113.0 111.7 12 13 9.3e-06 0.0098 16.7 2.5 1 23 398 420 398 421 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF25-201 - 456 1.1e-33 113.0 111.7 13 13 3.6e-06 0.0038 18.0 0.4 1 23 426 448 426 449 0.97 C2H2-type zinc finger KRAB PF01352.27 42 ZNF25-201 - 456 9.7e-24 82.8 0.0 1 1 2e-26 2.1e-23 81.7 0.0 1 42 7 48 7 48 0.99 KRAB box zf-C2H2_6 PF13912.6 27 ZNF25-201 - 456 7.2e-09 35.4 121.8 1 13 1.4 1.4e+03 -0.6 0.2 17 24 105 112 104 115 0.86 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF25-201 - 456 7.2e-09 35.4 121.8 2 13 0.24 2.6e+02 1.8 3.6 3 11 119 127 119 142 0.74 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF25-201 - 456 7.2e-09 35.4 121.8 3 13 0.00011 0.11 12.5 0.4 2 24 146 168 145 170 0.87 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF25-201 - 456 7.2e-09 35.4 121.8 4 13 8.6e-05 0.091 12.8 2.7 2 24 174 196 173 199 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF25-201 - 456 7.2e-09 35.4 121.8 5 13 0.027 29 4.8 6.0 2 24 202 224 202 227 0.83 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF25-201 - 456 7.2e-09 35.4 121.8 6 13 0.029 31 4.7 2.2 2 11 230 239 230 240 0.89 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF25-201 - 456 7.2e-09 35.4 121.8 7 13 0.0004 0.42 10.7 0.7 2 12 258 268 258 277 0.95 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF25-201 - 456 7.2e-09 35.4 121.8 8 13 0.0033 3.5 7.7 5.4 2 24 286 308 286 311 0.92 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF25-201 - 456 7.2e-09 35.4 121.8 9 13 0.068 71 3.6 3.9 2 24 314 336 314 339 0.86 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF25-201 - 456 7.2e-09 35.4 121.8 10 13 0.00024 0.26 11.4 3.2 2 24 342 364 342 367 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF25-201 - 456 7.2e-09 35.4 121.8 11 13 2.4e-05 0.026 14.5 0.4 2 24 370 392 370 395 0.86 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF25-201 - 456 7.2e-09 35.4 121.8 12 13 0.00064 0.67 10.0 0.9 2 12 398 408 398 409 0.92 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF25-201 - 456 7.2e-09 35.4 121.8 13 13 0.00053 0.56 10.3 2.1 2 26 426 450 426 451 0.87 C2H2-type zinc finger Zn-ribbon_8 PF09723.10 40 ZNF25-201 - 456 7.7e-07 29.1 81.6 1 12 0.087 91 3.3 2.1 16 34 106 125 100 131 0.71 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF25-201 - 456 7.7e-07 29.1 81.6 2 12 0.00011 0.12 12.5 5.1 6 33 146 180 145 183 0.92 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF25-201 - 456 7.7e-07 29.1 81.6 3 12 0.0034 3.6 7.8 0.7 6 22 174 190 172 195 0.87 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF25-201 - 456 7.7e-07 29.1 81.6 4 12 0.076 80 3.5 8.6 6 34 202 237 201 244 0.90 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF25-201 - 456 7.7e-07 29.1 81.6 5 12 0.00077 0.82 9.8 6.3 6 35 230 266 229 270 0.88 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF25-201 - 456 7.7e-07 29.1 81.6 6 12 2.3e-06 0.0024 17.9 4.6 6 34 258 293 257 298 0.92 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF25-201 - 456 7.7e-07 29.1 81.6 7 12 0.0076 8 6.7 8.8 6 34 286 321 285 328 0.87 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF25-201 - 456 7.7e-07 29.1 81.6 8 12 0.27 2.9e+02 1.7 9.3 6 34 314 349 313 352 0.88 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF25-201 - 456 7.7e-07 29.1 81.6 9 12 0.00083 0.88 9.7 5.7 6 34 342 377 341 381 0.90 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF25-201 - 456 7.7e-07 29.1 81.6 10 12 1.9e-05 0.02 15.0 4.0 6 35 370 406 369 410 0.84 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF25-201 - 456 7.7e-07 29.1 81.6 11 12 0.00026 0.27 11.4 6.5 6 34 398 433 397 438 0.86 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF25-201 - 456 7.7e-07 29.1 81.6 12 12 0.0043 4.5 7.5 1.1 6 16 426 436 424 449 0.81 Zinc ribbon domain # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF25-201.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF25-201.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF25-201.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF25-201.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF25-201.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:02:27 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZNF25-202 - 420 4e-87 283.1 117.3 1 13 2.4e-05 0.026 15.0 4.8 2 24 69 91 68 91 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF25-202 - 420 4e-87 283.1 117.3 2 13 5e-05 0.052 14.0 1.3 2 25 97 120 96 121 0.87 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF25-202 - 420 4e-87 283.1 117.3 3 13 3.3e-07 0.00035 20.9 3.1 1 24 124 147 124 149 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF25-202 - 420 4e-87 283.1 117.3 4 13 5e-11 5.3e-08 32.9 0.7 1 24 152 175 152 177 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF25-202 - 420 4e-87 283.1 117.3 5 13 4.7e-10 5e-07 29.9 3.9 1 24 180 203 180 204 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF25-202 - 420 4e-87 283.1 117.3 6 13 4.9e-12 5.2e-09 36.1 0.9 2 25 209 232 208 233 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF25-202 - 420 4e-87 283.1 117.3 7 13 8.8e-11 9.3e-08 32.2 3.7 1 25 236 260 236 261 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF25-202 - 420 4e-87 283.1 117.3 8 13 1e-09 1.1e-06 28.8 7.3 1 24 264 287 264 289 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF25-202 - 420 4e-87 283.1 117.3 9 13 2.1e-11 2.2e-08 34.1 1.5 1 24 292 315 292 317 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF25-202 - 420 4e-87 283.1 117.3 10 13 7.5e-13 7.9e-10 38.7 1.1 1 25 320 344 320 344 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF25-202 - 420 4e-87 283.1 117.3 11 13 1.7e-11 1.8e-08 34.4 0.8 2 25 349 372 349 373 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF25-202 - 420 4e-87 283.1 117.3 12 13 6e-10 6.3e-07 29.5 1.4 5 24 380 399 376 401 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF25-202 - 420 4e-87 283.1 117.3 13 13 0.049 52 4.5 0.3 2 13 405 416 404 418 0.89 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZNF25-202 - 420 7.7e-71 230.8 118.5 1 13 0.02 21 5.8 0.3 11 23 64 76 64 76 0.92 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF25-202 - 420 7.7e-71 230.8 118.5 2 13 3.3e-06 0.0034 17.7 5.9 2 23 83 104 82 104 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF25-202 - 420 7.7e-71 230.8 118.5 3 13 7.8e-09 8.2e-06 26.0 0.5 1 23 110 132 110 132 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF25-202 - 420 7.7e-71 230.8 118.5 4 13 2.6e-07 0.00028 21.2 4.1 1 23 138 160 138 160 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF25-202 - 420 7.7e-71 230.8 118.5 5 13 2.9e-07 0.0003 21.1 3.2 1 23 166 188 166 188 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF25-202 - 420 7.7e-71 230.8 118.5 6 13 3.9e-07 0.00041 20.6 0.9 1 23 194 216 194 216 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF25-202 - 420 7.7e-71 230.8 118.5 7 13 2.9e-10 3.1e-07 30.5 2.1 1 23 222 244 222 244 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF25-202 - 420 7.7e-71 230.8 118.5 8 13 3e-09 3.2e-06 27.3 5.7 1 23 250 272 250 272 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF25-202 - 420 7.7e-71 230.8 118.5 9 13 4e-08 4.3e-05 23.7 4.2 1 23 278 300 278 300 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF25-202 - 420 7.7e-71 230.8 118.5 10 13 3.8e-09 4e-06 27.0 3.4 1 23 306 328 306 328 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF25-202 - 420 7.7e-71 230.8 118.5 11 13 5.8e-08 6.1e-05 23.3 0.3 1 23 334 356 334 356 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF25-202 - 420 7.7e-71 230.8 118.5 12 13 4.6e-09 4.9e-06 26.7 2.9 1 23 362 384 362 384 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF25-202 - 420 7.7e-71 230.8 118.5 13 13 4.8e-09 5.1e-06 26.6 0.3 1 23 390 412 390 412 0.99 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZNF25-202 - 420 3e-34 114.7 111.7 1 13 0.74 7.8e+02 1.4 0.1 13 23 66 76 63 77 0.79 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF25-202 - 420 3e-34 114.7 111.7 2 13 0.0028 3 8.9 6.3 2 23 83 104 82 105 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF25-202 - 420 3e-34 114.7 111.7 3 13 5.9e-06 0.0062 17.3 0.3 3 23 112 132 110 133 0.91 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF25-202 - 420 3e-34 114.7 111.7 4 13 6.8e-05 0.071 14.0 2.7 1 23 138 160 138 161 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF25-202 - 420 3e-34 114.7 111.7 5 13 0.00012 0.12 13.2 2.6 1 23 166 188 166 189 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF25-202 - 420 3e-34 114.7 111.7 6 13 0.00025 0.26 12.2 1.1 1 23 194 216 194 217 0.85 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF25-202 - 420 3e-34 114.7 111.7 7 13 4.7e-06 0.005 17.6 2.0 1 23 222 244 222 245 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF25-202 - 420 3e-34 114.7 111.7 8 13 1.1e-05 0.011 16.4 4.4 1 23 250 272 250 273 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF25-202 - 420 3e-34 114.7 111.7 9 13 0.00024 0.25 12.3 3.8 1 23 278 300 278 301 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF25-202 - 420 3e-34 114.7 111.7 10 13 1.4e-05 0.015 16.1 2.2 1 23 306 328 306 329 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF25-202 - 420 3e-34 114.7 111.7 11 13 2.7e-05 0.029 15.2 0.4 1 23 334 356 334 357 0.88 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF25-202 - 420 3e-34 114.7 111.7 12 13 8.4e-06 0.0089 16.8 2.5 1 23 362 384 362 385 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF25-202 - 420 3e-34 114.7 111.7 13 13 3.2e-06 0.0034 18.1 0.4 1 23 390 412 390 413 0.97 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF25-202 - 420 5.9e-09 35.7 123.3 1 13 1.3 1.3e+03 -0.5 0.2 17 24 69 76 68 79 0.86 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF25-202 - 420 5.9e-09 35.7 123.3 2 13 0.22 2.3e+02 1.9 3.6 3 11 83 91 83 106 0.74 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF25-202 - 420 5.9e-09 35.7 123.3 3 13 9.8e-05 0.1 12.6 0.4 2 24 110 132 109 134 0.87 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF25-202 - 420 5.9e-09 35.7 123.3 4 13 7.8e-05 0.082 12.9 2.7 2 24 138 160 137 163 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF25-202 - 420 5.9e-09 35.7 123.3 5 13 0.024 25 5.0 6.0 2 24 166 188 166 191 0.83 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF25-202 - 420 5.9e-09 35.7 123.3 6 13 0.027 28 4.9 2.2 2 11 194 203 194 204 0.89 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF25-202 - 420 5.9e-09 35.7 123.3 7 13 0.00036 0.38 10.8 0.7 2 12 222 232 222 241 0.95 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF25-202 - 420 5.9e-09 35.7 123.3 8 13 0.003 3.2 7.9 5.4 2 24 250 272 250 275 0.92 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF25-202 - 420 5.9e-09 35.7 123.3 9 13 0.061 65 3.7 3.9 2 24 278 300 278 303 0.86 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF25-202 - 420 5.9e-09 35.7 123.3 10 13 0.00022 0.23 11.5 3.2 2 24 306 328 306 331 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF25-202 - 420 5.9e-09 35.7 123.3 11 13 2.2e-05 0.023 14.7 0.4 2 24 334 356 334 359 0.86 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF25-202 - 420 5.9e-09 35.7 123.3 12 13 0.00058 0.62 10.1 0.9 2 12 362 372 362 373 0.92 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF25-202 - 420 5.9e-09 35.7 123.3 13 13 0.0012 1.3 9.1 3.4 2 26 390 414 390 415 0.87 C2H2-type zinc finger zf_UBZ PF18439.1 32 ZNF25-202 - 420 5e-07 29.2 66.8 1 12 1.8 1.9e+03 -1.4 3.5 5 12 84 91 82 97 0.87 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF25-202 - 420 5e-07 29.2 66.8 2 12 0.00011 0.11 12.1 0.2 2 20 109 128 108 129 0.82 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF25-202 - 420 5e-07 29.2 66.8 3 12 0.0096 10 5.8 0.2 2 12 137 147 136 156 0.85 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF25-202 - 420 5e-07 29.2 66.8 4 12 0.022 23 4.7 1.6 3 21 166 185 164 185 0.92 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF25-202 - 420 5e-07 29.2 66.8 5 12 0.032 34 4.2 0.1 3 13 194 204 192 209 0.84 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF25-202 - 420 5e-07 29.2 66.8 6 12 0.0054 5.7 6.6 0.2 3 15 222 234 220 241 0.82 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF25-202 - 420 5e-07 29.2 66.8 7 12 0.0022 2.3 7.9 0.3 3 20 250 268 248 269 0.78 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF25-202 - 420 5e-07 29.2 66.8 8 12 0.079 83 2.9 1.1 3 14 278 289 276 297 0.78 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF25-202 - 420 5e-07 29.2 66.8 9 12 0.027 28 4.4 0.1 3 17 306 321 304 325 0.73 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF25-202 - 420 5e-07 29.2 66.8 10 12 0.0025 2.7 7.7 0.1 3 15 334 346 332 349 0.85 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF25-202 - 420 5e-07 29.2 66.8 11 12 0.0027 2.9 7.6 0.3 3 14 362 373 360 376 0.87 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF25-202 - 420 5e-07 29.2 66.8 12 12 0.002 2.2 8.0 0.5 3 21 390 409 388 409 0.86 Ubiquitin-Binding Zinc Finger Zn-ribbon_8 PF09723.10 40 ZNF25-202 - 420 5e-07 29.7 82.2 1 12 0.078 83 3.4 2.1 16 34 70 89 64 95 0.71 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF25-202 - 420 5e-07 29.7 82.2 2 12 0.0001 0.11 12.7 5.1 6 33 110 144 109 147 0.92 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF25-202 - 420 5e-07 29.7 82.2 3 12 0.0031 3.3 7.9 0.7 6 22 138 154 136 159 0.87 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF25-202 - 420 5e-07 29.7 82.2 4 12 0.087 92 3.3 8.8 6 34 166 201 165 206 0.91 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF25-202 - 420 5e-07 29.7 82.2 5 12 0.00076 0.8 9.9 6.4 6 35 194 230 193 234 0.88 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF25-202 - 420 5e-07 29.7 82.2 6 12 2.1e-06 0.0023 18.0 4.7 6 34 222 257 221 262 0.92 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF25-202 - 420 5e-07 29.7 82.2 7 12 0.0085 9 6.5 9.1 6 33 250 284 248 290 0.88 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF25-202 - 420 5e-07 29.7 82.2 8 12 0.36 3.8e+02 1.3 9.9 6 34 278 313 277 318 0.88 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF25-202 - 420 5e-07 29.7 82.2 9 12 0.00098 1 9.5 6.1 6 34 306 341 305 345 0.90 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF25-202 - 420 5e-07 29.7 82.2 10 12 1.8e-05 0.019 15.1 4.1 6 35 334 370 333 375 0.84 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF25-202 - 420 5e-07 29.7 82.2 11 12 0.00022 0.23 11.6 6.4 6 34 362 397 361 402 0.86 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF25-202 - 420 5e-07 29.7 82.2 12 12 0.0038 4 7.6 1.1 6 16 390 400 388 413 0.81 Zinc ribbon domain # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF25-202.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF25-202.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF25-202.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF25-202.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF25-202.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:02:27 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- KRAB PF01352.27 42 ZNF25-203 - 145 7.9e-25 86.2 0.8 1 2 1.9e-28 3.5e-24 84.2 0.0 1 42 7 48 7 48 0.99 KRAB box KRAB PF01352.27 42 ZNF25-203 - 145 7.9e-25 86.2 0.8 2 2 0.029 5.2e+02 0.4 0.1 12 25 126 139 124 144 0.72 KRAB box # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF25-203.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF25-203.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF25-203.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF25-203.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF25-203.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:02:28 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZNF253-201 - 423 1.1e-88 288.0 108.3 1 13 0.13 81 3.9 0.8 10 24 63 77 59 79 0.84 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF253-201 - 423 1.1e-88 288.0 108.3 2 13 9.2e-06 0.0059 17.0 0.3 8 26 89 107 86 107 0.90 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF253-201 - 423 1.1e-88 288.0 108.3 3 13 7.6e-11 4.9e-08 33.1 1.1 2 25 111 134 110 135 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF253-201 - 423 1.1e-88 288.0 108.3 4 13 4.1e-12 2.6e-09 37.1 1.2 1 26 138 163 138 163 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF253-201 - 423 1.1e-88 288.0 108.3 5 13 1e-11 6.4e-09 35.8 1.7 1 25 166 190 166 191 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF253-201 - 423 1.1e-88 288.0 108.3 6 13 1.4e-11 8.8e-09 35.4 2.1 1 26 194 219 194 219 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF253-201 - 423 1.1e-88 288.0 108.3 7 13 5.6e-07 0.00036 20.8 6.5 3 26 224 247 222 247 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF253-201 - 423 1.1e-88 288.0 108.3 8 13 7.6e-11 4.8e-08 33.1 1.8 1 24 250 273 250 274 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF253-201 - 423 1.1e-88 288.0 108.3 9 13 1.4e-09 8.9e-07 29.1 3.5 1 26 278 303 277 303 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF253-201 - 423 1.1e-88 288.0 108.3 10 13 1.7e-10 1.1e-07 31.9 1.9 4 25 309 330 307 330 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF253-201 - 423 1.1e-88 288.0 108.3 11 13 3.4e-12 2.2e-09 37.3 1.5 2 25 335 358 334 359 0.97 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF253-201 - 423 1.1e-88 288.0 108.3 12 13 3.3e-11 2.1e-08 34.2 1.3 2 25 363 386 362 386 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF253-201 - 423 1.1e-88 288.0 108.3 13 13 0.052 33 5.1 0.2 1 15 390 404 390 407 0.93 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZNF253-201 - 423 4.2e-59 193.8 87.8 1 11 6.3e-07 0.00041 20.7 1.2 1 23 96 118 96 118 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF253-201 - 423 4.2e-59 193.8 87.8 2 11 9e-09 5.7e-06 26.5 0.4 1 23 124 146 124 146 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF253-201 - 423 4.2e-59 193.8 87.8 3 11 3.1e-09 2e-06 27.9 0.9 1 23 152 174 152 174 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF253-201 - 423 4.2e-59 193.8 87.8 4 11 5.4e-08 3.5e-05 24.0 0.4 1 23 180 202 180 202 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF253-201 - 423 4.2e-59 193.8 87.8 5 11 1.7e-07 0.00011 22.4 3.6 1 23 208 230 208 230 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF253-201 - 423 4.2e-59 193.8 87.8 6 11 4.8e-08 3e-05 24.2 4.5 1 23 236 258 236 258 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF253-201 - 423 4.2e-59 193.8 87.8 7 11 7.9e-06 0.0051 17.2 3.0 1 23 264 286 264 286 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF253-201 - 423 4.2e-59 193.8 87.8 8 11 1.7e-06 0.0011 19.3 2.6 1 23 292 314 292 314 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF253-201 - 423 4.2e-59 193.8 87.8 9 11 7.8e-06 0.005 17.2 0.9 1 23 320 342 320 342 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF253-201 - 423 4.2e-59 193.8 87.8 10 11 5.4e-09 3.5e-06 27.2 1.0 1 23 348 370 348 370 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF253-201 - 423 4.2e-59 193.8 87.8 11 11 6.5e-07 0.00042 20.6 0.4 1 23 376 398 376 398 0.98 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZNF253-201 - 423 1.3e-33 112.7 81.4 1 11 5.6e-06 0.0036 18.0 0.8 1 23 96 118 96 119 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF253-201 - 423 1.3e-33 112.7 81.4 2 11 4.5e-05 0.029 15.2 0.3 1 23 124 146 124 147 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF253-201 - 423 1.3e-33 112.7 81.4 3 11 1.4e-05 0.0091 16.8 0.8 1 23 152 174 152 175 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF253-201 - 423 1.3e-33 112.7 81.4 4 11 1.9e-05 0.012 16.4 0.3 1 23 180 202 180 203 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF253-201 - 423 1.3e-33 112.7 81.4 5 11 0.00051 0.32 11.9 3.0 1 23 208 230 208 231 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF253-201 - 423 1.3e-33 112.7 81.4 6 11 0.00049 0.31 12.0 3.5 1 23 236 258 236 259 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF253-201 - 423 1.3e-33 112.7 81.4 7 11 0.0005 0.32 11.9 2.6 1 23 264 286 264 287 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF253-201 - 423 1.3e-33 112.7 81.4 8 11 0.0003 0.19 12.6 1.8 1 23 292 314 292 315 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF253-201 - 423 1.3e-33 112.7 81.4 9 11 1.1e-05 0.0072 17.1 0.7 1 23 320 342 320 343 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF253-201 - 423 1.3e-33 112.7 81.4 10 11 1e-05 0.0064 17.2 0.7 1 23 348 370 348 371 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF253-201 - 423 1.3e-33 112.7 81.4 11 11 8.2e-05 0.053 14.4 0.3 1 23 376 398 376 399 0.91 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF253-201 - 423 2.8e-20 71.8 98.1 1 12 9.1 5.8e+03 -2.5 0.3 2 13 68 79 67 80 0.72 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF253-201 - 423 2.8e-20 71.8 98.1 2 12 0.00016 0.1 12.6 0.6 2 24 96 118 95 121 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF253-201 - 423 2.8e-20 71.8 98.1 3 12 1.4e-05 0.009 16.0 0.4 2 24 124 146 124 149 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF253-201 - 423 2.8e-20 71.8 98.1 4 12 1.6e-05 0.01 15.8 1.5 2 24 152 174 152 177 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF253-201 - 423 2.8e-20 71.8 98.1 5 12 1.7e-06 0.0011 19.0 0.3 2 24 180 202 180 205 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF253-201 - 423 2.8e-20 71.8 98.1 6 12 0.18 1.2e+02 2.9 5.0 2 12 208 218 208 231 0.89 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF253-201 - 423 2.8e-20 71.8 98.1 7 12 0.00047 0.3 11.1 3.6 2 24 236 258 236 261 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF253-201 - 423 2.8e-20 71.8 98.1 8 12 0.01 6.5 6.9 3.3 2 22 264 284 264 288 0.85 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF253-201 - 423 2.8e-20 71.8 98.1 9 12 0.0073 4.7 7.3 1.7 2 22 292 312 292 316 0.82 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF253-201 - 423 2.8e-20 71.8 98.1 10 12 0.0012 0.75 9.9 4.7 2 24 320 342 320 345 0.84 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF253-201 - 423 2.8e-20 71.8 98.1 11 12 0.00018 0.11 12.5 1.1 2 24 348 370 348 373 0.91 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF253-201 - 423 2.8e-20 71.8 98.1 12 12 4.5e-05 0.029 14.4 0.5 2 24 376 398 376 400 0.95 C2H2-type zinc finger XPA_N PF01286.18 32 ZNF253-201 - 423 7.1e-20 70.8 45.6 1 11 0.074 47 4.1 0.1 3 14 97 108 96 114 0.86 XPA protein N-terminal XPA_N PF01286.18 32 ZNF253-201 - 423 7.1e-20 70.8 45.6 2 11 0.00082 0.53 10.4 0.1 3 14 125 136 123 142 0.88 XPA protein N-terminal XPA_N PF01286.18 32 ZNF253-201 - 423 7.1e-20 70.8 45.6 3 11 0.00056 0.36 10.9 0.1 3 14 153 164 151 170 0.88 XPA protein N-terminal XPA_N PF01286.18 32 ZNF253-201 - 423 7.1e-20 70.8 45.6 4 11 0.0012 0.75 9.9 0.1 3 14 181 192 179 197 0.90 XPA protein N-terminal XPA_N PF01286.18 32 ZNF253-201 - 423 7.1e-20 70.8 45.6 5 11 0.0049 3.1 7.9 0.5 3 12 209 218 207 219 0.89 XPA protein N-terminal XPA_N PF01286.18 32 ZNF253-201 - 423 7.1e-20 70.8 45.6 6 11 0.016 10 6.2 1.9 3 12 237 246 235 248 0.89 XPA protein N-terminal XPA_N PF01286.18 32 ZNF253-201 - 423 7.1e-20 70.8 45.6 7 11 0.00044 0.28 11.3 0.1 3 15 265 277 263 283 0.82 XPA protein N-terminal XPA_N PF01286.18 32 ZNF253-201 - 423 7.1e-20 70.8 45.6 8 11 0.0041 2.6 8.2 0.1 3 14 293 304 291 309 0.90 XPA protein N-terminal XPA_N PF01286.18 32 ZNF253-201 - 423 7.1e-20 70.8 45.6 9 11 0.0024 1.5 8.9 0.1 3 12 321 330 319 338 0.88 XPA protein N-terminal XPA_N PF01286.18 32 ZNF253-201 - 423 7.1e-20 70.8 45.6 10 11 0.001 0.64 10.1 0.2 3 14 349 360 347 366 0.85 XPA protein N-terminal XPA_N PF01286.18 32 ZNF253-201 - 423 7.1e-20 70.8 45.6 11 11 0.0031 2 8.5 0.2 3 13 377 387 375 389 0.86 XPA protein N-terminal zf-C2H2_jaz PF12171.8 27 ZNF253-201 - 423 8.5e-19 67.3 55.0 1 12 8 5.1e+03 -2.1 0.1 11 18 80 87 79 88 0.86 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF253-201 - 423 8.5e-19 67.3 55.0 2 12 8.2e-06 0.0052 17.0 0.1 2 22 96 116 95 116 0.96 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF253-201 - 423 8.5e-19 67.3 55.0 3 12 0.0017 1.1 9.6 0.1 2 22 124 144 123 144 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF253-201 - 423 8.5e-19 67.3 55.0 4 12 0.00039 0.25 11.7 0.2 2 22 152 172 151 172 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF253-201 - 423 8.5e-19 67.3 55.0 5 12 0.00029 0.18 12.1 0.1 2 21 180 199 179 200 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF253-201 - 423 8.5e-19 67.3 55.0 6 12 0.0016 1 9.8 0.5 2 22 208 228 207 228 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF253-201 - 423 8.5e-19 67.3 55.0 7 12 0.014 9.2 6.7 1.7 2 20 236 254 235 256 0.78 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF253-201 - 423 8.5e-19 67.3 55.0 8 12 0.044 28 5.1 0.4 2 20 264 282 263 283 0.83 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF253-201 - 423 8.5e-19 67.3 55.0 9 12 0.053 34 4.9 0.2 2 22 292 312 291 312 0.88 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF253-201 - 423 8.5e-19 67.3 55.0 10 12 0.022 14 6.1 0.2 2 23 320 341 319 342 0.81 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF253-201 - 423 8.5e-19 67.3 55.0 11 12 0.0016 1 9.7 0.0 2 22 348 368 347 368 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF253-201 - 423 8.5e-19 67.3 55.0 12 12 0.0031 2 8.8 0.5 2 22 376 396 375 396 0.93 Zinc-finger double-stranded RNA-binding zf_UBZ PF18439.1 32 ZNF253-201 - 423 2.4e-15 55.8 51.3 1 12 0.76 4.8e+02 0.5 0.0 24 29 4 9 4 10 0.96 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF253-201 - 423 2.4e-15 55.8 51.3 2 12 0.25 1.6e+02 2.0 0.0 3 20 96 114 94 115 0.82 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF253-201 - 423 2.4e-15 55.8 51.3 3 12 0.0015 0.97 9.1 0.1 3 20 124 142 122 143 0.86 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF253-201 - 423 2.4e-15 55.8 51.3 4 12 0.0011 0.68 9.6 0.2 3 20 152 170 150 171 0.87 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF253-201 - 423 2.4e-15 55.8 51.3 5 12 0.0006 0.38 10.4 0.1 3 20 180 198 178 199 0.91 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF253-201 - 423 2.4e-15 55.8 51.3 6 12 0.0024 1.5 8.4 0.7 3 20 208 226 206 227 0.79 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF253-201 - 423 2.4e-15 55.8 51.3 7 12 0.012 7.4 6.3 1.5 3 13 236 246 234 249 0.88 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF253-201 - 423 2.4e-15 55.8 51.3 8 12 0.0021 1.4 8.6 0.5 3 20 264 282 262 283 0.81 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF253-201 - 423 2.4e-15 55.8 51.3 9 12 0.025 16 5.2 0.2 3 20 292 310 290 311 0.78 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF253-201 - 423 2.4e-15 55.8 51.3 10 12 0.0041 2.7 7.7 0.1 3 12 320 329 318 336 0.87 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF253-201 - 423 2.4e-15 55.8 51.3 11 12 0.0005 0.32 10.6 0.1 3 20 348 366 346 367 0.86 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF253-201 - 423 2.4e-15 55.8 51.3 12 12 0.0043 2.8 7.6 0.1 3 20 376 394 374 395 0.75 Ubiquitin-Binding Zinc Finger Zn-ribbon_8 PF09723.10 40 ZNF253-201 - 423 4.5e-12 45.9 70.3 1 12 0.74 4.8e+02 1.0 0.7 7 22 69 84 67 107 0.43 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF253-201 - 423 4.5e-12 45.9 70.3 2 12 0.0092 5.9 7.1 2.6 6 34 96 131 93 132 0.81 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF253-201 - 423 4.5e-12 45.9 70.3 3 12 0.00037 0.24 11.6 6.3 6 34 124 159 123 159 0.85 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF253-201 - 423 4.5e-12 45.9 70.3 4 12 0.0001 0.067 13.3 6.8 6 38 152 191 151 192 0.86 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF253-201 - 423 4.5e-12 45.9 70.3 5 12 0.00062 0.4 10.9 7.1 6 35 180 216 179 218 0.81 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF253-201 - 423 4.5e-12 45.9 70.3 6 12 0.0041 2.6 8.2 9.1 6 35 208 244 206 248 0.84 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF253-201 - 423 4.5e-12 45.9 70.3 7 12 0.0038 2.4 8.3 8.9 6 34 236 271 235 274 0.84 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF253-201 - 423 4.5e-12 45.9 70.3 8 12 0.0047 3 8.0 0.9 6 16 264 274 261 284 0.86 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF253-201 - 423 4.5e-12 45.9 70.3 9 12 0.00037 0.24 11.5 6.1 6 35 292 328 291 330 0.85 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF253-201 - 423 4.5e-12 45.9 70.3 10 12 0.00016 0.1 12.8 5.2 6 34 320 355 318 357 0.84 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF253-201 - 423 4.5e-12 45.9 70.3 11 12 0.00019 0.12 12.5 6.5 6 34 348 383 346 386 0.84 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF253-201 - 423 4.5e-12 45.9 70.3 12 12 0.0044 2.8 8.1 0.7 6 16 376 386 375 400 0.84 Zinc ribbon domain zf-C2H2_11 PF16622.5 29 ZNF253-201 - 423 2.8e-11 42.9 30.2 1 11 0.66 4.2e+02 0.8 0.3 5 23 96 114 94 118 0.74 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF253-201 - 423 2.8e-11 42.9 30.2 2 11 0.022 14 5.5 0.0 5 26 124 145 121 146 0.87 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF253-201 - 423 2.8e-11 42.9 30.2 3 11 0.081 52 3.7 0.1 5 20 152 167 149 174 0.74 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF253-201 - 423 2.8e-11 42.9 30.2 4 11 0.071 45 3.9 0.0 5 23 180 198 177 202 0.76 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF253-201 - 423 2.8e-11 42.9 30.2 5 11 0.29 1.8e+02 2.0 0.2 5 14 208 217 205 219 0.86 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF253-201 - 423 2.8e-11 42.9 30.2 6 11 1.1 7.1e+02 0.1 0.4 6 14 237 245 235 257 0.82 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF253-201 - 423 2.8e-11 42.9 30.2 7 11 0.13 86 3.0 0.1 5 14 264 273 261 285 0.78 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF253-201 - 423 2.8e-11 42.9 30.2 8 11 0.017 11 5.9 0.1 5 15 292 302 289 313 0.77 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF253-201 - 423 2.8e-11 42.9 30.2 9 11 0.00064 0.41 10.4 0.0 5 24 320 339 317 341 0.92 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF253-201 - 423 2.8e-11 42.9 30.2 10 11 0.00043 0.28 11.0 0.1 5 26 348 369 345 370 0.92 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF253-201 - 423 2.8e-11 42.9 30.2 11 11 0.0044 2.8 7.8 0.0 5 26 376 397 373 398 0.90 zinc-finger C2H2-type C1_4 PF07975.12 55 ZNF253-201 - 423 2.6e-10 40.4 51.4 1 10 0.00021 0.13 12.5 1.0 1 49 97 147 97 149 0.83 TFIIH C1-like domain C1_4 PF07975.12 55 ZNF253-201 - 423 2.6e-10 40.4 51.4 2 10 0.016 10 6.4 0.3 19 48 145 174 133 176 0.74 TFIIH C1-like domain C1_4 PF07975.12 55 ZNF253-201 - 423 2.6e-10 40.4 51.4 3 10 6.6e-05 0.042 14.1 1.7 2 49 154 203 153 205 0.89 TFIIH C1-like domain C1_4 PF07975.12 55 ZNF253-201 - 423 2.6e-10 40.4 51.4 4 10 0.0063 4.1 7.7 3.3 1 48 181 230 181 233 0.84 TFIIH C1-like domain C1_4 PF07975.12 55 ZNF253-201 - 423 2.6e-10 40.4 51.4 5 10 0.03 19 5.5 6.4 2 49 210 259 209 261 0.79 TFIIH C1-like domain C1_4 PF07975.12 55 ZNF253-201 - 423 2.6e-10 40.4 51.4 6 10 0.0024 1.5 9.1 6.8 1 49 237 287 237 290 0.89 TFIIH C1-like domain C1_4 PF07975.12 55 ZNF253-201 - 423 2.6e-10 40.4 51.4 7 10 0.00082 0.52 10.6 0.1 25 49 291 315 287 318 0.92 TFIIH C1-like domain C1_4 PF07975.12 55 ZNF253-201 - 423 2.6e-10 40.4 51.4 8 10 0.49 3.2e+02 1.7 0.2 25 35 319 329 315 331 0.85 TFIIH C1-like domain C1_4 PF07975.12 55 ZNF253-201 - 423 2.6e-10 40.4 51.4 9 10 0.0041 2.6 8.3 2.0 2 49 322 371 321 373 0.80 TFIIH C1-like domain C1_4 PF07975.12 55 ZNF253-201 - 423 2.6e-10 40.4 51.4 10 10 0.00058 0.37 11.0 1.5 2 48 350 398 349 399 0.84 TFIIH C1-like domain zf-trcl PF13451.6 48 ZNF253-201 - 423 6.2e-09 35.6 45.1 1 11 6 3.9e+03 -2.1 0.1 5 14 96 105 95 109 0.74 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF253-201 - 423 6.2e-09 35.6 45.1 2 11 0.038 24 4.9 0.4 3 14 122 133 114 139 0.62 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF253-201 - 423 6.2e-09 35.6 45.1 3 11 0.011 7.3 6.6 5.3 3 47 122 165 120 166 0.78 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF253-201 - 423 6.2e-09 35.6 45.1 4 11 0.035 22 5.0 0.1 3 14 178 189 176 192 0.87 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF253-201 - 423 6.2e-09 35.6 45.1 5 11 0.032 20 5.1 0.1 3 14 206 217 204 221 0.86 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF253-201 - 423 6.2e-09 35.6 45.1 6 11 0.062 40 4.2 0.7 3 14 234 245 232 249 0.89 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF253-201 - 423 6.2e-09 35.6 45.1 7 11 0.026 16 5.4 0.1 3 14 262 273 260 278 0.86 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF253-201 - 423 6.2e-09 35.6 45.1 8 11 0.025 16 5.5 0.1 3 14 290 301 285 306 0.69 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF253-201 - 423 6.2e-09 35.6 45.1 9 11 0.0011 0.7 9.8 0.1 3 16 318 331 316 334 0.90 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF253-201 - 423 6.2e-09 35.6 45.1 10 11 0.0095 6.1 6.8 0.1 3 15 346 358 344 361 0.88 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF253-201 - 423 6.2e-09 35.6 45.1 11 11 0.0014 0.91 9.5 0.1 3 18 374 389 372 394 0.89 Probable zinc-ribbon domain # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF253-201.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF253-201.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF253-201.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF253-201.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF253-201.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:02:28 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- KRAB PF01352.27 42 ZNF253-202 - 50 2.2e-25 88.0 0.1 1 1 1.4e-29 2.4e-25 87.9 0.1 2 42 4 44 3 44 0.97 KRAB box # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF253-202.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF253-202.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF253-202.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF253-202.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF253-202.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:02:29 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZNF253-203 - 499 1.6e-87 284.3 108.6 1 13 0.15 98 3.6 0.8 10 24 139 153 135 155 0.84 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF253-203 - 499 1.6e-87 284.3 108.6 2 13 1.1e-05 0.0072 16.7 0.3 8 26 165 183 162 183 0.90 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF253-203 - 499 1.6e-87 284.3 108.6 3 13 9.3e-11 6e-08 32.8 1.1 2 25 187 210 186 211 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF253-203 - 499 1.6e-87 284.3 108.6 4 13 5.1e-12 3.2e-09 36.8 1.2 1 26 214 239 214 239 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF253-203 - 499 1.6e-87 284.3 108.6 5 13 1.2e-11 7.8e-09 35.6 1.7 1 25 242 266 242 267 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF253-203 - 499 1.6e-87 284.3 108.6 6 13 1.7e-11 1.1e-08 35.1 2.1 1 26 270 295 270 295 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF253-203 - 499 1.6e-87 284.3 108.6 7 13 6.8e-07 0.00044 20.6 6.5 3 26 300 323 298 323 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF253-203 - 499 1.6e-87 284.3 108.6 8 13 9.2e-11 5.9e-08 32.8 1.8 1 24 326 349 326 350 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF253-203 - 499 1.6e-87 284.3 108.6 9 13 2.1e-09 1.4e-06 28.5 3.8 1 26 354 379 354 379 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF253-203 - 499 1.6e-87 284.3 108.6 10 13 2.1e-10 1.4e-07 31.7 1.9 4 25 385 406 383 406 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF253-203 - 499 1.6e-87 284.3 108.6 11 13 4.1e-12 2.7e-09 37.1 1.5 2 25 411 434 410 435 0.97 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF253-203 - 499 1.6e-87 284.3 108.6 12 13 4e-11 2.6e-08 33.9 1.3 2 25 439 462 438 462 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF253-203 - 499 1.6e-87 284.3 108.6 13 13 0.063 40 4.9 0.2 1 15 466 480 466 483 0.93 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZNF253-203 - 499 3.5e-58 190.9 87.8 1 11 7.7e-07 0.00049 20.4 1.2 1 23 172 194 172 194 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF253-203 - 499 3.5e-58 190.9 87.8 2 11 1.1e-08 7e-06 26.2 0.4 1 23 200 222 200 222 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF253-203 - 499 3.5e-58 190.9 87.8 3 11 3.8e-09 2.5e-06 27.6 0.9 1 23 228 250 228 250 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF253-203 - 499 3.5e-58 190.9 87.8 4 11 6.6e-08 4.3e-05 23.7 0.4 1 23 256 278 256 278 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF253-203 - 499 3.5e-58 190.9 87.8 5 11 2.1e-07 0.00014 22.2 3.6 1 23 284 306 284 306 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF253-203 - 499 3.5e-58 190.9 87.8 6 11 5.8e-08 3.7e-05 23.9 4.5 1 23 312 334 312 334 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF253-203 - 499 3.5e-58 190.9 87.8 7 11 9.7e-06 0.0062 16.9 3.0 1 23 340 362 340 362 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF253-203 - 499 3.5e-58 190.9 87.8 8 11 2.1e-06 0.0014 19.0 2.6 1 23 368 390 368 390 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF253-203 - 499 3.5e-58 190.9 87.8 9 11 9.6e-06 0.0061 17.0 0.9 1 23 396 418 396 418 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF253-203 - 499 3.5e-58 190.9 87.8 10 11 6.6e-09 4.2e-06 26.9 1.0 1 23 424 446 424 446 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF253-203 - 499 3.5e-58 190.9 87.8 11 11 7.9e-07 0.00051 20.4 0.4 1 23 452 474 452 474 0.98 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZNF253-203 - 499 1.1e-32 109.8 81.4 1 11 6.8e-06 0.0044 17.8 0.8 1 23 172 194 172 195 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF253-203 - 499 1.1e-32 109.8 81.4 2 11 5.5e-05 0.035 14.9 0.3 1 23 200 222 200 223 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF253-203 - 499 1.1e-32 109.8 81.4 3 11 1.7e-05 0.011 16.5 0.8 1 23 228 250 228 251 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF253-203 - 499 1.1e-32 109.8 81.4 4 11 2.3e-05 0.015 16.1 0.3 1 23 256 278 256 279 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF253-203 - 499 1.1e-32 109.8 81.4 5 11 0.00062 0.4 11.7 3.0 1 23 284 306 284 307 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF253-203 - 499 1.1e-32 109.8 81.4 6 11 0.0006 0.38 11.7 3.5 1 23 312 334 312 335 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF253-203 - 499 1.1e-32 109.8 81.4 7 11 0.00061 0.39 11.7 2.6 1 23 340 362 340 363 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF253-203 - 499 1.1e-32 109.8 81.4 8 11 0.00037 0.24 12.4 1.8 1 23 368 390 368 391 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF253-203 - 499 1.1e-32 109.8 81.4 9 11 1.4e-05 0.0088 16.8 0.7 1 23 396 418 396 419 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF253-203 - 499 1.1e-32 109.8 81.4 10 11 1.2e-05 0.0079 17.0 0.7 1 23 424 446 424 447 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF253-203 - 499 1.1e-32 109.8 81.4 11 11 0.0001 0.065 14.1 0.3 1 23 452 474 452 475 0.91 C2H2-type zinc finger KRAB PF01352.27 42 ZNF253-203 - 499 9.1e-24 82.8 0.4 1 2 3.9e-26 2.5e-23 81.4 0.1 2 42 4 44 3 44 0.97 KRAB box KRAB PF01352.27 42 ZNF253-203 - 499 9.1e-24 82.8 0.4 2 2 3.7 2.4e+03 -1.7 0.0 17 26 134 143 133 145 0.85 KRAB box zf-C2H2_6 PF13912.6 27 ZNF253-203 - 499 1.1e-19 69.9 96.7 1 11 0.0002 0.13 12.3 0.6 2 24 172 194 171 197 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF253-203 - 499 1.1e-19 69.9 96.7 2 11 1.7e-05 0.011 15.7 0.4 2 24 200 222 200 225 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF253-203 - 499 1.1e-19 69.9 96.7 3 11 2e-05 0.013 15.5 1.5 2 24 228 250 228 253 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF253-203 - 499 1.1e-19 69.9 96.7 4 11 2e-06 0.0013 18.7 0.3 2 24 256 278 256 281 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF253-203 - 499 1.1e-19 69.9 96.7 5 11 0.12 78 3.4 4.1 2 12 284 294 284 307 0.89 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF253-203 - 499 1.1e-19 69.9 96.7 6 11 0.00057 0.37 10.9 3.6 2 24 312 334 312 337 0.92 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF253-203 - 499 1.1e-19 69.9 96.7 7 11 0.012 7.9 6.6 3.3 2 22 340 360 340 364 0.85 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF253-203 - 499 1.1e-19 69.9 96.7 8 11 0.0088 5.6 7.1 1.7 2 22 368 388 368 392 0.82 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF253-203 - 499 1.1e-19 69.9 96.7 9 11 0.001 0.65 10.1 4.2 2 24 396 418 396 421 0.84 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF253-203 - 499 1.1e-19 69.9 96.7 10 11 0.00022 0.14 12.2 1.1 2 24 424 446 424 449 0.91 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF253-203 - 499 1.1e-19 69.9 96.7 11 11 5.5e-05 0.035 14.1 0.5 2 24 452 474 452 476 0.95 C2H2-type zinc finger XPA_N PF01286.18 32 ZNF253-203 - 499 5.2e-19 68.0 45.6 1 11 0.089 57 3.9 0.1 3 14 173 184 172 190 0.86 XPA protein N-terminal XPA_N PF01286.18 32 ZNF253-203 - 499 5.2e-19 68.0 45.6 2 11 0.001 0.64 10.1 0.1 3 14 201 212 199 218 0.88 XPA protein N-terminal XPA_N PF01286.18 32 ZNF253-203 - 499 5.2e-19 68.0 45.6 3 11 0.00068 0.43 10.7 0.1 3 14 229 240 227 246 0.88 XPA protein N-terminal XPA_N PF01286.18 32 ZNF253-203 - 499 5.2e-19 68.0 45.6 4 11 0.0014 0.9 9.6 0.1 3 14 257 268 255 273 0.90 XPA protein N-terminal XPA_N PF01286.18 32 ZNF253-203 - 499 5.2e-19 68.0 45.6 5 11 0.0058 3.7 7.7 0.5 3 12 285 294 283 295 0.89 XPA protein N-terminal XPA_N PF01286.18 32 ZNF253-203 - 499 5.2e-19 68.0 45.6 6 11 0.02 13 6.0 1.9 3 12 313 322 311 324 0.89 XPA protein N-terminal XPA_N PF01286.18 32 ZNF253-203 - 499 5.2e-19 68.0 45.6 7 11 0.00053 0.34 11.0 0.1 3 15 341 353 339 359 0.82 XPA protein N-terminal XPA_N PF01286.18 32 ZNF253-203 - 499 5.2e-19 68.0 45.6 8 11 0.0049 3.1 7.9 0.1 3 14 369 380 367 385 0.90 XPA protein N-terminal XPA_N PF01286.18 32 ZNF253-203 - 499 5.2e-19 68.0 45.6 9 11 0.0029 1.8 8.6 0.1 3 12 397 406 395 414 0.88 XPA protein N-terminal XPA_N PF01286.18 32 ZNF253-203 - 499 5.2e-19 68.0 45.6 10 11 0.0012 0.78 9.8 0.2 3 14 425 436 423 442 0.85 XPA protein N-terminal XPA_N PF01286.18 32 ZNF253-203 - 499 5.2e-19 68.0 45.6 11 11 0.0037 2.4 8.3 0.2 3 13 453 463 451 465 0.86 XPA protein N-terminal zf-C2H2_jaz PF12171.8 27 ZNF253-203 - 499 7.6e-18 64.3 55.0 1 12 9.6 6.1e+03 -2.3 0.1 11 18 156 163 155 164 0.86 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF253-203 - 499 7.6e-18 64.3 55.0 2 12 9.9e-06 0.0064 16.8 0.1 2 22 172 192 171 192 0.96 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF253-203 - 499 7.6e-18 64.3 55.0 3 12 0.0021 1.4 9.3 0.1 2 22 200 220 199 220 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF253-203 - 499 7.6e-18 64.3 55.0 4 12 0.00048 0.31 11.4 0.2 2 22 228 248 227 248 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF253-203 - 499 7.6e-18 64.3 55.0 5 12 0.00035 0.22 11.8 0.1 2 21 256 275 255 276 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF253-203 - 499 7.6e-18 64.3 55.0 6 12 0.0019 1.2 9.5 0.5 2 22 284 304 283 304 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF253-203 - 499 7.6e-18 64.3 55.0 7 12 0.017 11 6.4 1.7 2 20 312 330 311 332 0.78 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF253-203 - 499 7.6e-18 64.3 55.0 8 12 0.053 34 4.9 0.4 2 20 340 358 339 359 0.83 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF253-203 - 499 7.6e-18 64.3 55.0 9 12 0.064 41 4.6 0.2 2 22 368 388 367 388 0.88 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF253-203 - 499 7.6e-18 64.3 55.0 10 12 0.027 17 5.8 0.2 2 23 396 417 395 418 0.81 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF253-203 - 499 7.6e-18 64.3 55.0 11 12 0.002 1.3 9.4 0.0 2 22 424 444 423 444 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF253-203 - 499 7.6e-18 64.3 55.0 12 12 0.0038 2.4 8.5 0.5 2 22 452 472 451 472 0.93 Zinc-finger double-stranded RNA-binding zf_UBZ PF18439.1 32 ZNF253-203 - 499 2.1e-14 52.8 51.3 1 12 0.9 5.8e+02 0.2 0.0 24 29 80 85 80 86 0.96 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF253-203 - 499 2.1e-14 52.8 51.3 2 12 0.31 2e+02 1.7 0.0 3 20 172 190 170 191 0.82 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF253-203 - 499 2.1e-14 52.8 51.3 3 12 0.0018 1.2 8.8 0.1 3 20 200 218 198 219 0.86 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF253-203 - 499 2.1e-14 52.8 51.3 4 12 0.0013 0.83 9.3 0.2 3 20 228 246 226 247 0.87 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF253-203 - 499 2.1e-14 52.8 51.3 5 12 0.00073 0.47 10.1 0.1 3 20 256 274 254 275 0.91 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF253-203 - 499 2.1e-14 52.8 51.3 6 12 0.0029 1.9 8.2 0.7 3 20 284 302 282 303 0.79 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF253-203 - 499 2.1e-14 52.8 51.3 7 12 0.014 9 6.0 1.5 3 13 312 322 310 325 0.88 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF253-203 - 499 2.1e-14 52.8 51.3 8 12 0.0026 1.6 8.4 0.5 3 20 340 358 338 359 0.81 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF253-203 - 499 2.1e-14 52.8 51.3 9 12 0.03 19 4.9 0.2 3 20 368 386 366 387 0.78 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF253-203 - 499 2.1e-14 52.8 51.3 10 12 0.005 3.2 7.4 0.1 3 12 396 405 394 412 0.87 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF253-203 - 499 2.1e-14 52.8 51.3 11 12 0.00061 0.39 10.3 0.1 3 20 424 442 422 443 0.86 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF253-203 - 499 2.1e-14 52.8 51.3 12 12 0.0052 3.3 7.4 0.1 3 19 452 469 450 471 0.75 Ubiquitin-Binding Zinc Finger Zn-ribbon_8 PF09723.10 40 ZNF253-203 - 499 2.4e-11 43.6 70.1 1 12 0.74 4.7e+02 1.0 0.6 7 34 145 179 143 184 0.42 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF253-203 - 499 2.4e-11 43.6 70.1 2 12 0.012 7.4 6.8 2.6 6 34 172 207 169 208 0.81 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF253-203 - 499 2.4e-11 43.6 70.1 3 12 0.0002 0.13 12.4 6.7 6 36 200 237 199 239 0.84 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF253-203 - 499 2.4e-11 43.6 70.1 4 12 0.00011 0.071 13.2 6.7 6 38 228 267 226 269 0.86 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF253-203 - 499 2.4e-11 43.6 70.1 5 12 0.0008 0.51 10.5 7.1 6 35 256 292 255 294 0.81 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF253-203 - 499 2.4e-11 43.6 70.1 6 12 0.0012 0.75 10.0 7.0 6 34 284 319 283 323 0.83 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF253-203 - 499 2.4e-11 43.6 70.1 7 12 0.0035 2.3 8.4 8.5 6 34 312 347 311 351 0.84 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF253-203 - 499 2.4e-11 43.6 70.1 8 12 0.0051 3.3 7.9 0.7 6 16 340 350 338 360 0.85 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF253-203 - 499 2.4e-11 43.6 70.1 9 12 0.00045 0.29 11.3 6.1 6 35 368 404 367 406 0.85 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF253-203 - 499 2.4e-11 43.6 70.1 10 12 0.00026 0.17 12.1 5.0 6 34 396 431 395 431 0.83 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF253-203 - 499 2.4e-11 43.6 70.1 11 12 0.00023 0.15 12.2 6.4 6 34 424 459 422 462 0.84 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF253-203 - 499 2.4e-11 43.6 70.1 12 12 0.0051 3.2 7.9 0.6 6 16 452 462 451 476 0.84 Zinc ribbon domain zf-C2H2_11 PF16622.5 29 ZNF253-203 - 499 3.2e-10 39.6 30.9 1 11 0.8 5.1e+02 0.6 0.3 5 23 172 190 170 194 0.74 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF253-203 - 499 3.2e-10 39.6 30.9 2 11 0.027 17 5.3 0.0 5 26 200 221 197 222 0.87 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF253-203 - 499 3.2e-10 39.6 30.9 3 11 0.098 63 3.5 0.1 5 20 228 243 225 250 0.74 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF253-203 - 499 3.2e-10 39.6 30.9 4 11 0.086 55 3.6 0.0 5 23 256 274 253 278 0.76 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF253-203 - 499 3.2e-10 39.6 30.9 5 11 0.35 2.2e+02 1.7 0.2 5 14 284 293 281 295 0.86 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF253-203 - 499 3.2e-10 39.6 30.9 6 11 1.7 1.1e+03 -0.5 0.6 6 14 313 321 312 333 0.81 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF253-203 - 499 3.2e-10 39.6 30.9 7 11 0.16 1e+02 2.8 0.1 5 14 340 349 337 361 0.78 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF253-203 - 499 3.2e-10 39.6 30.9 8 11 0.02 13 5.7 0.1 5 15 368 378 365 389 0.77 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF253-203 - 499 3.2e-10 39.6 30.9 9 11 0.00078 0.5 10.2 0.0 5 24 396 415 393 417 0.92 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF253-203 - 499 3.2e-10 39.6 30.9 10 11 0.00052 0.34 10.7 0.1 5 26 424 445 421 446 0.92 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF253-203 - 499 3.2e-10 39.6 30.9 11 11 0.0054 3.4 7.5 0.0 5 26 452 473 449 474 0.90 zinc-finger C2H2-type C1_4 PF07975.12 55 ZNF253-203 - 499 1.6e-09 37.9 51.6 1 9 0.00024 0.16 12.3 0.9 1 49 173 223 173 225 0.82 TFIIH C1-like domain C1_4 PF07975.12 55 ZNF253-203 - 499 1.6e-09 37.9 51.6 2 9 0.02 13 6.1 0.2 19 48 221 250 209 252 0.74 TFIIH C1-like domain C1_4 PF07975.12 55 ZNF253-203 - 499 1.6e-09 37.9 51.6 3 9 8.3e-05 0.053 13.8 1.7 2 49 230 279 229 281 0.89 TFIIH C1-like domain C1_4 PF07975.12 55 ZNF253-203 - 499 1.6e-09 37.9 51.6 4 9 0.04 26 5.2 6.5 2 49 286 335 285 337 0.79 TFIIH C1-like domain C1_4 PF07975.12 55 ZNF253-203 - 499 1.6e-09 37.9 51.6 5 9 0.0029 1.8 8.8 6.8 1 49 313 363 313 366 0.89 TFIIH C1-like domain C1_4 PF07975.12 55 ZNF253-203 - 499 1.6e-09 37.9 51.6 6 9 0.001 0.66 10.3 0.1 25 49 367 391 363 393 0.92 TFIIH C1-like domain C1_4 PF07975.12 55 ZNF253-203 - 499 1.6e-09 37.9 51.6 7 9 0.59 3.8e+02 1.4 0.1 25 35 395 405 391 407 0.85 TFIIH C1-like domain C1_4 PF07975.12 55 ZNF253-203 - 499 1.6e-09 37.9 51.6 8 9 0.005 3.2 8.1 2.0 2 49 398 447 397 449 0.80 TFIIH C1-like domain C1_4 PF07975.12 55 ZNF253-203 - 499 1.6e-09 37.9 51.6 9 9 0.00083 0.53 10.6 1.7 2 48 426 474 425 475 0.84 TFIIH C1-like domain zf-trcl PF13451.6 48 ZNF253-203 - 499 3.9e-08 33.0 45.1 1 11 8 5.1e+03 -2.5 0.1 5 14 172 181 171 184 0.77 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF253-203 - 499 3.9e-08 33.0 45.1 2 11 0.048 31 4.6 0.4 32 43 198 209 190 214 0.60 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF253-203 - 499 3.9e-08 33.0 45.1 3 11 0.014 8.8 6.3 5.2 3 47 198 241 196 242 0.78 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF253-203 - 499 3.9e-08 33.0 45.1 4 11 0.042 27 4.8 0.1 3 14 254 265 252 268 0.87 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF253-203 - 499 3.9e-08 33.0 45.1 5 11 0.039 25 4.9 0.1 3 14 282 293 280 297 0.86 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF253-203 - 499 3.9e-08 33.0 45.1 6 11 0.075 48 4.0 0.7 3 14 310 321 308 325 0.89 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF253-203 - 499 3.9e-08 33.0 45.1 7 11 0.031 20 5.2 0.1 3 14 338 349 336 354 0.86 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF253-203 - 499 3.9e-08 33.0 45.1 8 11 0.029 19 5.3 0.1 3 14 366 377 359 382 0.71 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF253-203 - 499 3.9e-08 33.0 45.1 9 11 0.0013 0.84 9.6 0.1 3 16 394 407 392 410 0.90 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF253-203 - 499 3.9e-08 33.0 45.1 10 11 0.011 7.3 6.6 0.1 3 15 422 434 420 437 0.88 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF253-203 - 499 3.9e-08 33.0 45.1 11 11 0.0017 1.1 9.2 0.1 3 18 450 465 448 470 0.89 Probable zinc-ribbon domain # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF253-203.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF253-203.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF253-203.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF253-203.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF253-203.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:02:30 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF253-204.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF253-204.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF253-204.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF253-204.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF253-204.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:02:30 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZNF253-205 - 243 4.1e-24 83.9 26.9 1 5 0.081 36 5.0 0.7 10 24 107 121 102 123 0.84 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF253-205 - 243 4.1e-24 83.9 26.9 2 5 6.6e-06 0.0029 17.9 0.3 8 26 133 151 130 151 0.90 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF253-205 - 243 4.1e-24 83.9 26.9 3 5 5.3e-11 2.4e-08 34.0 1.1 2 25 155 178 154 179 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF253-205 - 243 4.1e-24 83.9 26.9 4 5 5.1e-12 2.3e-09 37.3 1.1 1 25 182 206 182 206 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF253-205 - 243 4.1e-24 83.9 26.9 5 5 0.038 17 6.0 0.2 1 15 210 224 210 227 0.93 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZNF253-205 - 243 1.1e-16 60.3 17.0 1 3 4.4e-07 0.0002 21.6 1.2 1 23 140 162 140 162 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF253-205 - 243 1.1e-16 60.3 17.0 2 3 6.3e-09 2.8e-06 27.5 0.4 1 23 168 190 168 190 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF253-205 - 243 1.1e-16 60.3 17.0 3 3 4.5e-07 0.0002 21.6 0.4 1 23 196 218 196 218 0.98 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZNF253-205 - 243 1.6e-10 40.9 16.0 1 3 3.9e-06 0.0017 19.0 0.8 1 23 140 162 140 163 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF253-205 - 243 1.6e-10 40.9 16.0 2 3 3.1e-05 0.014 16.2 0.3 1 23 168 190 168 191 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF253-205 - 243 1.6e-10 40.9 16.0 3 3 5.7e-05 0.026 15.4 0.3 1 23 196 218 196 219 0.91 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF253-205 - 243 1.2e-08 34.7 18.0 1 4 6.5 2.9e+03 -1.6 0.3 2 13 112 123 111 125 0.74 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF253-205 - 243 1.2e-08 34.7 18.0 2 4 0.00011 0.051 13.6 0.6 2 24 140 162 139 165 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF253-205 - 243 1.2e-08 34.7 18.0 3 4 9.8e-06 0.0044 17.0 0.4 2 24 168 190 168 193 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF253-205 - 243 1.2e-08 34.7 18.0 4 4 3.2e-05 0.014 15.4 0.5 2 24 196 218 196 220 0.95 C2H2-type zinc finger # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF253-205.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF253-205.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF253-205.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF253-205.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF253-205.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:02:30 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- KRAB PF01352.27 42 ZNF254-201 - 91 1.9e-23 81.8 0.2 1 1 2.9e-27 2.6e-23 81.4 0.2 1 42 12 53 12 53 0.98 KRAB box # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF254-201.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF254-201.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF254-201.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF254-201.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF254-201.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:02:31 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZNF254-202 - 659 2.5e-103 334.3 135.8 1 18 1.4 9.2e+02 0.6 0.2 13 24 152 163 148 165 0.82 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF254-202 - 659 2.5e-103 334.3 135.8 2 18 0.25 1.6e+02 3.0 1.2 8 19 175 186 173 192 0.83 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF254-202 - 659 2.5e-103 334.3 135.8 3 18 0.0013 0.8 10.2 4.9 5 25 200 220 195 220 0.75 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF254-202 - 659 2.5e-103 334.3 135.8 4 18 0.0054 3.5 8.2 0.4 2 22 225 245 224 246 0.88 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF254-202 - 659 2.5e-103 334.3 135.8 5 18 1.2e-06 0.00077 19.8 0.1 2 25 253 276 252 277 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF254-202 - 659 2.5e-103 334.3 135.8 6 18 1e-10 6.5e-08 32.7 0.3 1 24 280 303 280 304 0.97 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF254-202 - 659 2.5e-103 334.3 135.8 7 18 7.9e-09 5.1e-06 26.7 2.4 2 24 309 331 308 332 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF254-202 - 659 2.5e-103 334.3 135.8 8 18 3.1e-12 2e-09 37.4 1.5 2 25 337 360 336 361 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF254-202 - 659 2.5e-103 334.3 135.8 9 18 4.4e-09 2.8e-06 27.5 1.0 2 26 365 389 364 389 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF254-202 - 659 2.5e-103 334.3 135.8 10 18 4e-07 0.00025 21.3 0.4 2 25 393 416 392 417 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF254-202 - 659 2.5e-103 334.3 135.8 11 18 1e-10 6.5e-08 32.7 0.3 1 24 420 443 420 444 0.97 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF254-202 - 659 2.5e-103 334.3 135.8 12 18 5.1e-10 3.3e-07 30.4 2.0 2 24 449 471 448 472 0.97 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF254-202 - 659 2.5e-103 334.3 135.8 13 18 5e-12 3.2e-09 36.8 1.9 2 25 477 500 476 501 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF254-202 - 659 2.5e-103 334.3 135.8 14 18 3.1e-10 2e-07 31.1 0.7 2 25 505 528 504 528 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF254-202 - 659 2.5e-103 334.3 135.8 15 18 5.4e-10 3.4e-07 30.4 2.6 2 26 533 557 532 557 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF254-202 - 659 2.5e-103 334.3 135.8 16 18 3.3e-11 2.1e-08 34.2 1.6 2 25 561 584 561 585 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF254-202 - 659 2.5e-103 334.3 135.8 17 18 4.9e-08 3.1e-05 24.2 2.4 3 24 590 611 589 612 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF254-202 - 659 2.5e-103 334.3 135.8 18 18 0.00034 0.22 12.0 0.3 2 16 617 631 616 633 0.94 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZNF254-202 - 659 2.9e-68 222.7 104.6 1 16 7.3e-06 0.0047 17.3 0.6 1 21 210 230 210 231 0.95 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF254-202 - 659 2.9e-68 222.7 104.6 2 16 4 2.6e+03 -0.8 0.1 11 23 248 260 238 260 0.77 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF254-202 - 659 2.9e-68 222.7 104.6 3 16 4.1e-08 2.6e-05 24.4 0.2 1 23 266 288 266 288 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF254-202 - 659 2.9e-68 222.7 104.6 4 16 1.7e-05 0.011 16.1 0.2 1 23 294 316 294 316 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF254-202 - 659 2.9e-68 222.7 104.6 5 16 1.2e-06 0.00075 19.8 0.6 1 23 322 344 322 344 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF254-202 - 659 2.9e-68 222.7 104.6 6 16 6.4e-08 4.1e-05 23.8 0.4 1 23 350 372 350 372 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF254-202 - 659 2.9e-68 222.7 104.6 7 16 4.6e-07 0.00029 21.1 0.5 1 23 378 400 378 400 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF254-202 - 659 2.9e-68 222.7 104.6 8 16 2.1e-08 1.4e-05 25.3 0.5 1 23 406 428 406 428 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF254-202 - 659 2.9e-68 222.7 104.6 9 16 1.6e-06 0.001 19.4 0.4 1 23 434 456 434 456 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF254-202 - 659 2.9e-68 222.7 104.6 10 16 1.2e-06 0.00075 19.8 0.6 1 23 462 484 462 484 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF254-202 - 659 2.9e-68 222.7 104.6 11 16 2.5e-08 1.6e-05 25.1 0.8 1 23 490 512 490 512 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF254-202 - 659 2.9e-68 222.7 104.6 12 16 4.7e-06 0.003 17.9 0.3 1 23 518 540 518 540 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF254-202 - 659 2.9e-68 222.7 104.6 13 16 5.3e-07 0.00034 20.9 1.0 1 23 546 568 546 568 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF254-202 - 659 2.9e-68 222.7 104.6 14 16 8.5e-08 5.5e-05 23.4 1.8 1 23 574 596 574 596 0.95 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF254-202 - 659 2.9e-68 222.7 104.6 15 16 5.3e-06 0.0034 17.8 0.9 1 23 602 624 602 624 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF254-202 - 659 2.9e-68 222.7 104.6 16 16 0.39 2.5e+02 2.4 0.0 7 17 636 646 636 647 0.91 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZNF254-202 - 659 8e-33 110.3 98.8 1 14 0.00033 0.21 12.5 0.5 1 21 210 230 210 232 0.89 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF254-202 - 659 8e-33 110.3 98.8 2 14 8.6e-05 0.055 14.3 0.2 1 23 266 288 266 289 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF254-202 - 659 8e-33 110.3 98.8 3 14 0.0075 4.8 8.3 0.4 1 23 294 316 294 317 0.82 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF254-202 - 659 8e-33 110.3 98.8 4 14 0.00097 0.62 11.1 0.7 1 23 322 344 322 345 0.85 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF254-202 - 659 8e-33 110.3 98.8 5 14 2.7e-05 0.018 15.9 0.4 1 23 350 372 350 373 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF254-202 - 659 8e-33 110.3 98.8 6 14 0.0003 0.19 12.6 0.3 1 23 378 400 378 401 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF254-202 - 659 8e-33 110.3 98.8 7 14 3.4e-05 0.022 15.6 0.3 1 23 406 428 406 429 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF254-202 - 659 8e-33 110.3 98.8 8 14 0.003 1.9 9.5 0.5 1 23 434 456 434 457 0.84 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF254-202 - 659 8e-33 110.3 98.8 9 14 0.00097 0.62 11.1 0.7 1 23 462 484 462 485 0.85 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF254-202 - 659 8e-33 110.3 98.8 10 14 8.8e-06 0.0057 17.4 0.7 1 23 490 512 490 513 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF254-202 - 659 8e-33 110.3 98.8 11 14 0.00085 0.54 11.2 0.4 1 23 518 540 518 541 0.89 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF254-202 - 659 8e-33 110.3 98.8 12 14 0.00013 0.081 13.8 0.8 1 23 546 568 546 569 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF254-202 - 659 8e-33 110.3 98.8 13 14 4.1e-05 0.026 15.3 1.3 1 23 574 596 574 597 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF254-202 - 659 8e-33 110.3 98.8 14 14 0.0023 1.4 9.9 1.0 1 23 602 624 602 625 0.85 C2H2-type zinc finger zf-C2H2_jaz PF12171.8 27 ZNF254-202 - 659 4.9e-25 87.2 56.8 1 14 0.00023 0.15 12.4 0.4 2 22 210 230 209 230 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF254-202 - 659 4.9e-25 87.2 56.8 2 14 0.018 11 6.4 0.1 2 21 266 285 265 286 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF254-202 - 659 4.9e-25 87.2 56.8 3 14 0.004 2.6 8.5 0.1 2 22 294 314 293 314 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF254-202 - 659 4.9e-25 87.2 56.8 4 14 0.0073 4.7 7.6 0.0 2 22 322 342 321 342 0.91 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF254-202 - 659 4.9e-25 87.2 56.8 5 14 0.0024 1.5 9.2 0.1 2 21 350 369 349 370 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF254-202 - 659 4.9e-25 87.2 56.8 6 14 0.02 13 6.2 0.1 2 21 378 397 377 398 0.90 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF254-202 - 659 4.9e-25 87.2 56.8 7 14 0.00015 0.097 13.0 0.1 2 21 406 425 405 426 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF254-202 - 659 4.9e-25 87.2 56.8 8 14 0.0045 2.9 8.3 0.1 2 22 434 454 433 454 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF254-202 - 659 4.9e-25 87.2 56.8 9 14 0.0073 4.7 7.6 0.0 2 22 462 482 461 482 0.91 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF254-202 - 659 4.9e-25 87.2 56.8 10 14 0.00083 0.53 10.6 0.1 2 21 490 509 489 510 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF254-202 - 659 4.9e-25 87.2 56.8 11 14 0.0079 5 7.5 0.1 2 21 518 537 517 538 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF254-202 - 659 4.9e-25 87.2 56.8 12 14 0.076 49 4.4 0.3 2 22 546 566 545 566 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF254-202 - 659 4.9e-25 87.2 56.8 13 14 4.1e-05 0.026 14.8 0.2 2 21 574 593 573 594 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF254-202 - 659 4.9e-25 87.2 56.8 14 14 0.043 28 5.2 0.2 2 21 602 621 601 622 0.88 Zinc-finger double-stranded RNA-binding XPA_N PF01286.18 32 ZNF254-202 - 659 3.3e-24 84.6 58.3 1 14 0.0065 4.2 7.5 0.2 3 14 211 222 210 228 0.83 XPA protein N-terminal XPA_N PF01286.18 32 ZNF254-202 - 659 3.3e-24 84.6 58.3 2 14 0.0078 5 7.3 0.2 3 14 267 278 266 284 0.88 XPA protein N-terminal XPA_N PF01286.18 32 ZNF254-202 - 659 3.3e-24 84.6 58.3 3 14 0.0048 3.1 7.9 0.1 3 13 295 305 293 311 0.86 XPA protein N-terminal XPA_N PF01286.18 32 ZNF254-202 - 659 3.3e-24 84.6 58.3 4 14 0.0049 3.1 7.9 0.1 3 13 323 333 321 338 0.86 XPA protein N-terminal XPA_N PF01286.18 32 ZNF254-202 - 659 3.3e-24 84.6 58.3 5 14 0.00065 0.42 10.7 0.2 3 14 351 362 349 369 0.86 XPA protein N-terminal XPA_N PF01286.18 32 ZNF254-202 - 659 3.3e-24 84.6 58.3 6 14 0.0054 3.5 7.8 0.1 3 12 379 388 377 396 0.86 XPA protein N-terminal XPA_N PF01286.18 32 ZNF254-202 - 659 3.3e-24 84.6 58.3 7 14 0.0036 2.3 8.3 0.1 3 14 407 418 406 424 0.88 XPA protein N-terminal XPA_N PF01286.18 32 ZNF254-202 - 659 3.3e-24 84.6 58.3 8 14 0.0047 3 8.0 0.1 3 14 435 446 433 451 0.85 XPA protein N-terminal XPA_N PF01286.18 32 ZNF254-202 - 659 3.3e-24 84.6 58.3 9 14 0.0049 3.1 7.9 0.1 3 13 463 473 461 478 0.86 XPA protein N-terminal XPA_N PF01286.18 32 ZNF254-202 - 659 3.3e-24 84.6 58.3 10 14 0.00093 0.6 10.2 0.3 3 14 491 502 489 509 0.86 XPA protein N-terminal XPA_N PF01286.18 32 ZNF254-202 - 659 3.3e-24 84.6 58.3 11 14 0.0038 2.5 8.2 0.1 3 14 519 530 517 536 0.85 XPA protein N-terminal XPA_N PF01286.18 32 ZNF254-202 - 659 3.3e-24 84.6 58.3 12 14 0.00047 0.3 11.2 0.1 3 19 547 563 545 565 0.87 XPA protein N-terminal XPA_N PF01286.18 32 ZNF254-202 - 659 3.3e-24 84.6 58.3 13 14 0.0025 1.6 8.8 0.3 3 14 575 586 573 593 0.87 XPA protein N-terminal XPA_N PF01286.18 32 ZNF254-202 - 659 3.3e-24 84.6 58.3 14 14 0.0079 5.1 7.2 0.2 3 11 603 611 601 619 0.86 XPA protein N-terminal KRAB PF01352.27 42 ZNF254-202 - 659 3.9e-22 77.6 0.2 1 1 1.1e-24 6.7e-22 76.9 0.2 2 42 13 53 12 53 0.98 KRAB box zf_UBZ PF18439.1 32 ZNF254-202 - 659 1e-18 66.6 62.1 1 16 1.2 7.8e+02 -0.2 0.0 24 29 89 94 89 95 0.96 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF254-202 - 659 1e-18 66.6 62.1 2 16 3 1.9e+03 -1.4 0.1 7 20 183 196 183 197 0.87 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF254-202 - 659 1e-18 66.6 62.1 3 16 0.0063 4.1 7.1 0.1 2 13 209 220 208 228 0.85 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF254-202 - 659 1e-18 66.6 62.1 4 16 0.0071 4.5 6.9 0.1 3 20 266 284 264 285 0.82 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF254-202 - 659 1e-18 66.6 62.1 5 16 0.0014 0.91 9.2 0.2 3 20 294 312 292 313 0.82 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF254-202 - 659 1e-18 66.6 62.1 6 16 0.015 9.4 5.9 0.1 3 12 322 331 320 340 0.85 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF254-202 - 659 1e-18 66.6 62.1 7 16 0.00064 0.41 10.3 0.2 3 20 350 368 348 369 0.88 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF254-202 - 659 1e-18 66.6 62.1 8 16 0.025 16 5.2 0.1 2 20 377 396 376 397 0.78 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF254-202 - 659 1e-18 66.6 62.1 9 16 0.0053 3.4 7.4 0.1 3 20 406 424 404 425 0.81 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF254-202 - 659 1e-18 66.6 62.1 10 16 0.012 8 6.2 0.1 3 12 434 443 432 453 0.80 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF254-202 - 659 1e-18 66.6 62.1 11 16 0.015 9.4 5.9 0.1 3 12 462 471 460 480 0.85 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF254-202 - 659 1e-18 66.6 62.1 12 16 0.00024 0.15 11.7 0.2 3 20 490 508 488 509 0.88 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF254-202 - 659 1e-18 66.6 62.1 13 16 0.012 7.7 6.2 0.1 3 13 518 528 516 537 0.81 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF254-202 - 659 1e-18 66.6 62.1 14 16 0.0038 2.4 7.8 0.1 3 16 546 559 544 565 0.82 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF254-202 - 659 1e-18 66.6 62.1 15 16 0.0027 1.7 8.3 0.2 3 15 574 586 572 593 0.78 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF254-202 - 659 1e-18 66.6 62.1 16 16 0.021 13 5.4 0.1 3 12 602 611 600 620 0.88 Ubiquitin-Binding Zinc Finger zf-trcl PF13451.6 48 ZNF254-202 - 659 1.1e-16 60.4 63.6 1 12 0.00076 0.49 10.3 0.3 3 18 208 223 206 246 0.85 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF254-202 - 659 1.1e-16 60.4 63.6 2 12 0.25 1.6e+02 2.3 0.2 3 14 264 275 263 278 0.85 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF254-202 - 659 1.1e-16 60.4 63.6 3 12 0.00028 0.18 11.8 0.1 3 18 292 307 290 312 0.90 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF254-202 - 659 1.1e-16 60.4 63.6 4 12 0.0003 0.19 11.6 3.3 3 42 320 358 318 363 0.79 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF254-202 - 659 1.1e-16 60.4 63.6 5 12 0.51 3.3e+02 1.3 0.2 3 14 376 387 374 389 0.85 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF254-202 - 659 1.1e-16 60.4 63.6 6 12 0.33 2.1e+02 1.9 0.2 3 14 404 415 403 417 0.84 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF254-202 - 659 1.1e-16 60.4 63.6 7 12 0.00031 0.2 11.6 0.1 3 18 432 447 430 450 0.91 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF254-202 - 659 1.1e-16 60.4 63.6 8 12 0.00025 0.16 11.9 0.1 2 18 459 475 458 479 0.90 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF254-202 - 659 1.1e-16 60.4 63.6 9 12 0.037 24 4.9 0.1 3 14 488 499 486 503 0.88 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF254-202 - 659 1.1e-16 60.4 63.6 10 12 0.00069 0.44 10.5 4.5 3 46 516 558 514 559 0.84 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF254-202 - 659 1.1e-16 60.4 63.6 11 12 0.032 21 5.1 0.1 3 14 572 583 570 592 0.86 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF254-202 - 659 1.1e-16 60.4 63.6 12 12 0.0036 2.3 8.2 0.3 3 18 600 615 600 618 0.91 Probable zinc-ribbon domain zf-C2H2_11 PF16622.5 29 ZNF254-202 - 659 3.7e-16 58.6 41.4 1 14 0.0021 1.3 8.8 0.0 3 26 208 231 207 232 0.90 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF254-202 - 659 3.7e-16 58.6 41.4 2 14 0.17 1.1e+02 2.7 0.1 5 25 266 286 265 288 0.77 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF254-202 - 659 3.7e-16 58.6 41.4 3 14 0.18 1.2e+02 2.6 0.0 5 20 294 309 291 316 0.73 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF254-202 - 659 3.7e-16 58.6 41.4 4 14 0.0051 3.2 7.6 0.1 5 26 322 343 320 344 0.93 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF254-202 - 659 3.7e-16 58.6 41.4 5 14 0.0049 3.2 7.6 0.1 5 26 350 371 347 372 0.89 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF254-202 - 659 3.7e-16 58.6 41.4 6 14 0.043 27 4.6 0.3 5 14 378 387 376 400 0.76 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF254-202 - 659 3.7e-16 58.6 41.4 7 14 0.2 1.3e+02 2.4 0.2 5 24 406 425 405 428 0.75 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF254-202 - 659 3.7e-16 58.6 41.4 8 14 0.013 8.3 6.3 0.0 5 26 434 455 431 456 0.92 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF254-202 - 659 3.7e-16 58.6 41.4 9 14 0.0044 2.8 7.8 0.0 5 26 462 483 459 484 0.92 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF254-202 - 659 3.7e-16 58.6 41.4 10 14 0.005 3.2 7.6 0.1 5 26 490 511 487 512 0.89 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF254-202 - 659 3.7e-16 58.6 41.4 11 14 0.0074 4.8 7.0 0.0 5 26 518 539 515 540 0.90 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF254-202 - 659 3.7e-16 58.6 41.4 12 14 0.11 70 3.3 0.1 5 26 546 567 542 568 0.80 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF254-202 - 659 3.7e-16 58.6 41.4 13 14 0.16 1e+02 2.8 0.1 5 23 574 592 571 596 0.74 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF254-202 - 659 3.7e-16 58.6 41.4 14 14 0.018 12 5.8 0.1 5 26 602 623 601 624 0.92 zinc-finger C2H2-type zf-C2H2_6 PF13912.6 27 ZNF254-202 - 659 4.5e-16 58.4 107.3 1 15 2.3 1.5e+03 -0.6 0.4 20 26 196 202 194 203 0.86 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF254-202 - 659 4.5e-16 58.4 107.3 2 15 0.00018 0.12 12.5 0.5 2 12 210 220 209 230 0.87 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF254-202 - 659 4.5e-16 58.4 107.3 3 15 2.4e-05 0.016 15.2 0.2 2 24 266 288 265 291 0.92 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF254-202 - 659 4.5e-16 58.4 107.3 4 15 0.099 64 3.7 3.4 2 23 294 315 294 319 0.76 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF254-202 - 659 4.5e-16 58.4 107.3 5 15 0.023 15 5.7 0.2 2 11 322 331 322 345 0.91 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF254-202 - 659 4.5e-16 58.4 107.3 6 15 0.00098 0.63 10.1 0.8 2 24 350 372 350 375 0.90 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF254-202 - 659 4.5e-16 58.4 107.3 7 15 0.00011 0.069 13.2 0.5 1 24 377 400 377 402 0.91 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF254-202 - 659 4.5e-16 58.4 107.3 8 15 9.8e-06 0.0063 16.5 0.4 2 24 406 428 405 431 0.92 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF254-202 - 659 4.5e-16 58.4 107.3 9 15 0.14 90 3.2 3.4 2 12 434 444 434 459 0.73 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF254-202 - 659 4.5e-16 58.4 107.3 10 15 0.023 15 5.7 0.2 2 11 462 471 462 485 0.91 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF254-202 - 659 4.5e-16 58.4 107.3 11 15 0.0002 0.13 12.3 1.1 2 24 490 512 490 515 0.90 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF254-202 - 659 4.5e-16 58.4 107.3 12 15 0.0031 2 8.5 0.5 2 24 518 540 518 543 0.83 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF254-202 - 659 4.5e-16 58.4 107.3 13 15 0.045 29 4.8 0.9 2 21 546 565 546 570 0.76 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF254-202 - 659 4.5e-16 58.4 107.3 14 15 0.0034 2.2 8.4 1.8 2 12 574 584 574 593 0.92 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF254-202 - 659 4.5e-16 58.4 107.3 15 15 0.2 1.3e+02 2.7 3.6 2 11 602 611 602 626 0.80 C2H2-type zinc finger Zn-ribbon_8 PF09723.10 40 ZNF254-202 - 659 8.1e-15 54.7 88.7 1 14 0.0013 0.84 9.8 0.7 6 17 210 227 209 242 0.66 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF254-202 - 659 8.1e-15 54.7 88.7 2 14 0.0011 0.7 10.1 6.7 6 34 266 301 265 303 0.86 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF254-202 - 659 8.1e-15 54.7 88.7 3 14 0.0011 0.72 10.0 5.8 6 34 294 329 293 332 0.88 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF254-202 - 659 8.1e-15 54.7 88.7 4 14 0.00085 0.55 10.4 6.4 6 35 322 358 320 361 0.87 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF254-202 - 659 8.1e-15 54.7 88.7 5 14 0.005 3.2 7.9 0.7 6 17 350 361 348 370 0.84 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF254-202 - 659 8.1e-15 54.7 88.7 6 14 0.0027 1.7 8.8 0.0 6 20 378 392 377 399 0.85 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF254-202 - 659 8.1e-15 54.7 88.7 7 14 0.0005 0.32 11.2 5.7 6 34 406 441 405 443 0.86 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF254-202 - 659 8.1e-15 54.7 88.7 8 14 0.0013 0.85 9.8 6.0 6 34 434 469 433 472 0.87 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF254-202 - 659 8.1e-15 54.7 88.7 9 14 0.0014 0.89 9.7 6.9 6 34 462 497 460 501 0.87 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF254-202 - 659 8.1e-15 54.7 88.7 10 14 0.00065 0.42 10.8 6.4 6 34 490 525 488 526 0.86 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF254-202 - 659 8.1e-15 54.7 88.7 11 14 8.9e-05 0.057 13.5 5.0 6 36 518 555 517 558 0.80 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF254-202 - 659 8.1e-15 54.7 88.7 12 14 0.0056 3.6 7.8 0.5 6 16 546 556 544 568 0.86 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF254-202 - 659 8.1e-15 54.7 88.7 13 14 0.0017 1.1 9.4 6.9 6 34 574 609 573 611 0.74 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF254-202 - 659 8.1e-15 54.7 88.7 14 14 0.028 18 5.6 1.1 6 15 602 611 601 616 0.92 Zinc ribbon domain # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF254-202.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF254-202.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF254-202.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF254-202.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF254-202.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:02:31 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF254-203.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF254-203.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF254-203.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF254-203.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF254-203.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:02:32 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF254-204.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF254-204.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF254-204.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF254-204.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF254-204.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:02:32 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF254-205.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF254-205.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF254-205.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF254-205.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF254-205.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:02:32 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZNF254-206 - 586 2.4e-104 337.5 135.9 1 18 1.3 8.1e+02 0.7 0.2 13 24 79 90 75 92 0.82 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF254-206 - 586 2.4e-104 337.5 135.9 2 18 0.22 1.4e+02 3.2 1.2 8 19 102 113 100 119 0.83 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF254-206 - 586 2.4e-104 337.5 135.9 3 18 0.0011 0.7 10.4 4.9 5 25 127 147 122 147 0.75 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF254-206 - 586 2.4e-104 337.5 135.9 4 18 0.0047 3 8.4 0.4 2 22 152 172 151 173 0.88 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF254-206 - 586 2.4e-104 337.5 135.9 5 18 1e-06 0.00067 20.0 0.1 2 25 180 203 179 204 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF254-206 - 586 2.4e-104 337.5 135.9 6 18 8.9e-11 5.7e-08 32.8 0.3 1 24 207 230 207 231 0.97 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF254-206 - 586 2.4e-104 337.5 135.9 7 18 6.9e-09 4.4e-06 26.9 2.4 2 24 236 258 235 259 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF254-206 - 586 2.4e-104 337.5 135.9 8 18 2.7e-12 1.7e-09 37.6 1.5 2 25 264 287 263 288 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF254-206 - 586 2.4e-104 337.5 135.9 9 18 3.8e-09 2.5e-06 27.7 1.0 2 26 292 316 291 316 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF254-206 - 586 2.4e-104 337.5 135.9 10 18 3.5e-07 0.00022 21.5 0.4 2 25 320 343 319 344 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF254-206 - 586 2.4e-104 337.5 135.9 11 18 8.9e-11 5.7e-08 32.8 0.3 1 24 347 370 347 371 0.97 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF254-206 - 586 2.4e-104 337.5 135.9 12 18 4.4e-10 2.8e-07 30.6 2.0 2 24 376 398 375 399 0.97 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF254-206 - 586 2.4e-104 337.5 135.9 13 18 4.3e-12 2.8e-09 37.0 1.9 2 25 404 427 403 428 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF254-206 - 586 2.4e-104 337.5 135.9 14 18 2.7e-10 1.7e-07 31.3 0.7 2 25 432 455 431 455 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF254-206 - 586 2.4e-104 337.5 135.9 15 18 4.7e-10 3e-07 30.6 2.6 2 26 460 484 459 484 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF254-206 - 586 2.4e-104 337.5 135.9 16 18 2.9e-11 1.9e-08 34.4 1.6 2 25 488 511 488 512 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF254-206 - 586 2.4e-104 337.5 135.9 17 18 4.2e-08 2.7e-05 24.4 2.4 3 24 517 538 516 539 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF254-206 - 586 2.4e-104 337.5 135.9 18 18 0.0003 0.19 12.2 0.3 2 16 544 558 543 560 0.94 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZNF254-206 - 586 4.1e-69 225.4 104.6 1 16 6.4e-06 0.0041 17.5 0.6 1 21 137 157 137 158 0.95 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF254-206 - 586 4.1e-69 225.4 104.6 2 16 3.5 2.3e+03 -0.6 0.1 11 23 175 187 165 187 0.77 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF254-206 - 586 4.1e-69 225.4 104.6 3 16 3.6e-08 2.3e-05 24.6 0.2 1 23 193 215 193 215 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF254-206 - 586 4.1e-69 225.4 104.6 4 16 1.5e-05 0.0097 16.3 0.2 1 23 221 243 221 243 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF254-206 - 586 4.1e-69 225.4 104.6 5 16 1e-06 0.00066 20.0 0.6 1 23 249 271 249 271 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF254-206 - 586 4.1e-69 225.4 104.6 6 16 5.6e-08 3.6e-05 24.0 0.4 1 23 277 299 277 299 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF254-206 - 586 4.1e-69 225.4 104.6 7 16 4e-07 0.00026 21.3 0.5 1 23 305 327 305 327 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF254-206 - 586 4.1e-69 225.4 104.6 8 16 1.9e-08 1.2e-05 25.5 0.5 1 23 333 355 333 355 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF254-206 - 586 4.1e-69 225.4 104.6 9 16 1.4e-06 0.00089 19.6 0.4 1 23 361 383 361 383 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF254-206 - 586 4.1e-69 225.4 104.6 10 16 1e-06 0.00066 20.0 0.6 1 23 389 411 389 411 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF254-206 - 586 4.1e-69 225.4 104.6 11 16 2.2e-08 1.4e-05 25.3 0.8 1 23 417 439 417 439 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF254-206 - 586 4.1e-69 225.4 104.6 12 16 4.1e-06 0.0026 18.1 0.3 1 23 445 467 445 467 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF254-206 - 586 4.1e-69 225.4 104.6 13 16 4.6e-07 0.0003 21.1 1.0 1 23 473 495 473 495 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF254-206 - 586 4.1e-69 225.4 104.6 14 16 7.4e-08 4.8e-05 23.6 1.8 1 23 501 523 501 523 0.95 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF254-206 - 586 4.1e-69 225.4 104.6 15 16 4.6e-06 0.0029 17.9 0.9 1 23 529 551 529 551 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF254-206 - 586 4.1e-69 225.4 104.6 16 16 0.34 2.2e+02 2.6 0.0 7 17 563 573 563 574 0.91 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZNF254-206 - 586 1.1e-33 113.0 98.8 1 14 0.00029 0.18 12.7 0.5 1 21 137 157 137 159 0.89 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF254-206 - 586 1.1e-33 113.0 98.8 2 14 7.5e-05 0.048 14.5 0.2 1 23 193 215 193 216 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF254-206 - 586 1.1e-33 113.0 98.8 3 14 0.0065 4.2 8.5 0.4 1 23 221 243 221 244 0.82 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF254-206 - 586 1.1e-33 113.0 98.8 4 14 0.00084 0.54 11.2 0.7 1 23 249 271 249 272 0.85 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF254-206 - 586 1.1e-33 113.0 98.8 5 14 2.4e-05 0.015 16.1 0.4 1 23 277 299 277 300 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF254-206 - 586 1.1e-33 113.0 98.8 6 14 0.00026 0.17 12.8 0.3 1 23 305 327 305 328 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF254-206 - 586 1.1e-33 113.0 98.8 7 14 3e-05 0.019 15.8 0.3 1 23 333 355 333 356 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF254-206 - 586 1.1e-33 113.0 98.8 8 14 0.0026 1.7 9.7 0.5 1 23 361 383 361 384 0.84 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF254-206 - 586 1.1e-33 113.0 98.8 9 14 0.00084 0.54 11.2 0.7 1 23 389 411 389 412 0.85 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF254-206 - 586 1.1e-33 113.0 98.8 10 14 7.7e-06 0.0049 17.6 0.7 1 23 417 439 417 440 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF254-206 - 586 1.1e-33 113.0 98.8 11 14 0.00074 0.47 11.4 0.4 1 23 445 467 445 468 0.89 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF254-206 - 586 1.1e-33 113.0 98.8 12 14 0.00011 0.071 14.0 0.8 1 23 473 495 473 496 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF254-206 - 586 1.1e-33 113.0 98.8 13 14 3.6e-05 0.023 15.5 1.3 1 23 501 523 501 524 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF254-206 - 586 1.1e-33 113.0 98.8 14 14 0.002 1.3 10.1 1.0 1 23 529 551 529 552 0.85 C2H2-type zinc finger zf-C2H2_jaz PF12171.8 27 ZNF254-206 - 586 7.6e-26 89.8 56.9 1 14 0.0002 0.13 12.6 0.4 2 22 137 157 136 157 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF254-206 - 586 7.6e-26 89.8 56.9 2 14 0.016 10 6.6 0.1 2 21 193 212 192 213 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF254-206 - 586 7.6e-26 89.8 56.9 3 14 0.0035 2.2 8.6 0.1 2 22 221 241 220 241 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF254-206 - 586 7.6e-26 89.8 56.9 4 14 0.0064 4.1 7.8 0.0 2 22 249 269 248 269 0.91 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF254-206 - 586 7.6e-26 89.8 56.9 5 14 0.0021 1.4 9.3 0.1 2 21 277 296 276 297 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF254-206 - 586 7.6e-26 89.8 56.9 6 14 0.018 11 6.4 0.1 2 21 305 324 304 325 0.90 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF254-206 - 586 7.6e-26 89.8 56.9 7 14 0.00013 0.085 13.2 0.1 2 21 333 352 332 353 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF254-206 - 586 7.6e-26 89.8 56.9 8 14 0.0039 2.5 8.5 0.1 2 22 361 381 360 381 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF254-206 - 586 7.6e-26 89.8 56.9 9 14 0.0064 4.1 7.8 0.0 2 22 389 409 388 409 0.91 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF254-206 - 586 7.6e-26 89.8 56.9 10 14 0.00072 0.46 10.8 0.1 2 21 417 436 416 437 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF254-206 - 586 7.6e-26 89.8 56.9 11 14 0.0069 4.4 7.7 0.1 2 21 445 464 444 465 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF254-206 - 586 7.6e-26 89.8 56.9 12 14 0.066 42 4.6 0.3 2 22 473 493 472 493 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF254-206 - 586 7.6e-26 89.8 56.9 13 14 3.6e-05 0.023 15.0 0.2 2 21 501 520 500 521 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF254-206 - 586 7.6e-26 89.8 56.9 14 14 0.038 24 5.4 0.2 2 21 529 548 528 549 0.88 Zinc-finger double-stranded RNA-binding XPA_N PF01286.18 32 ZNF254-206 - 586 5.4e-25 87.1 58.3 1 14 0.0057 3.6 7.7 0.2 3 14 138 149 137 155 0.83 XPA protein N-terminal XPA_N PF01286.18 32 ZNF254-206 - 586 5.4e-25 87.1 58.3 2 14 0.0068 4.4 7.4 0.2 3 14 194 205 193 211 0.88 XPA protein N-terminal XPA_N PF01286.18 32 ZNF254-206 - 586 5.4e-25 87.1 58.3 3 14 0.0042 2.7 8.1 0.1 3 13 222 232 220 238 0.86 XPA protein N-terminal XPA_N PF01286.18 32 ZNF254-206 - 586 5.4e-25 87.1 58.3 4 14 0.0043 2.8 8.1 0.1 3 13 250 260 248 265 0.86 XPA protein N-terminal XPA_N PF01286.18 32 ZNF254-206 - 586 5.4e-25 87.1 58.3 5 14 0.00057 0.37 10.9 0.2 3 14 278 289 276 296 0.86 XPA protein N-terminal XPA_N PF01286.18 32 ZNF254-206 - 586 5.4e-25 87.1 58.3 6 14 0.0047 3 7.9 0.1 3 12 306 315 304 323 0.86 XPA protein N-terminal XPA_N PF01286.18 32 ZNF254-206 - 586 5.4e-25 87.1 58.3 7 14 0.0031 2 8.5 0.1 3 14 334 345 333 351 0.88 XPA protein N-terminal XPA_N PF01286.18 32 ZNF254-206 - 586 5.4e-25 87.1 58.3 8 14 0.0041 2.6 8.2 0.1 3 14 362 373 360 378 0.85 XPA protein N-terminal XPA_N PF01286.18 32 ZNF254-206 - 586 5.4e-25 87.1 58.3 9 14 0.0043 2.8 8.1 0.1 3 13 390 400 388 405 0.86 XPA protein N-terminal XPA_N PF01286.18 32 ZNF254-206 - 586 5.4e-25 87.1 58.3 10 14 0.00082 0.52 10.4 0.3 3 14 418 429 416 436 0.86 XPA protein N-terminal XPA_N PF01286.18 32 ZNF254-206 - 586 5.4e-25 87.1 58.3 11 14 0.0034 2.2 8.4 0.1 3 14 446 457 444 463 0.85 XPA protein N-terminal XPA_N PF01286.18 32 ZNF254-206 - 586 5.4e-25 87.1 58.3 12 14 0.00041 0.26 11.3 0.1 3 19 474 490 472 492 0.87 XPA protein N-terminal XPA_N PF01286.18 32 ZNF254-206 - 586 5.4e-25 87.1 58.3 13 14 0.0022 1.4 9.0 0.3 3 14 502 513 500 520 0.87 XPA protein N-terminal XPA_N PF01286.18 32 ZNF254-206 - 586 5.4e-25 87.1 58.3 14 14 0.0069 4.4 7.4 0.2 3 11 530 538 528 546 0.86 XPA protein N-terminal zf_UBZ PF18439.1 32 ZNF254-206 - 586 1.9e-19 68.9 62.5 1 16 1.1 6.9e+02 -0.0 0.0 24 29 16 21 16 22 0.96 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF254-206 - 586 1.9e-19 68.9 62.5 2 16 2.6 1.7e+03 -1.3 0.1 7 20 110 123 110 124 0.87 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF254-206 - 586 1.9e-19 68.9 62.5 3 16 0.0056 3.6 7.3 0.1 2 13 136 147 135 155 0.85 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF254-206 - 586 1.9e-19 68.9 62.5 4 16 0.0062 4 7.1 0.1 3 20 193 211 191 212 0.82 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF254-206 - 586 1.9e-19 68.9 62.5 5 16 0.0012 0.8 9.4 0.2 3 20 221 239 219 240 0.82 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF254-206 - 586 1.9e-19 68.9 62.5 6 16 0.012 7.5 6.2 0.1 3 12 249 258 247 268 0.82 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF254-206 - 586 1.9e-19 68.9 62.5 7 16 0.00056 0.36 10.5 0.2 3 20 277 295 275 296 0.88 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF254-206 - 586 1.9e-19 68.9 62.5 8 16 0.022 14 5.4 0.1 2 20 304 323 303 324 0.78 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF254-206 - 586 1.9e-19 68.9 62.5 9 16 0.0046 2.9 7.5 0.1 3 20 333 351 331 352 0.81 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF254-206 - 586 1.9e-19 68.9 62.5 10 16 0.011 7 6.3 0.1 3 12 361 370 359 380 0.80 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF254-206 - 586 1.9e-19 68.9 62.5 11 16 0.012 7.5 6.2 0.1 3 12 389 398 387 408 0.82 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF254-206 - 586 1.9e-19 68.9 62.5 12 16 0.00021 0.13 11.8 0.2 3 20 417 435 415 436 0.88 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF254-206 - 586 1.9e-19 68.9 62.5 13 16 0.011 6.7 6.4 0.1 3 13 445 455 443 464 0.81 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF254-206 - 586 1.9e-19 68.9 62.5 14 16 0.0033 2.1 8.0 0.1 3 16 473 486 471 492 0.82 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF254-206 - 586 1.9e-19 68.9 62.5 15 16 0.0024 1.5 8.5 0.2 3 15 501 513 499 520 0.78 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF254-206 - 586 1.9e-19 68.9 62.5 16 16 0.018 12 5.6 0.1 3 12 529 538 527 547 0.88 Ubiquitin-Binding Zinc Finger zf-trcl PF13451.6 48 ZNF254-206 - 586 2.6e-17 62.4 63.9 1 12 0.00066 0.42 10.5 0.3 3 18 135 150 133 173 0.85 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF254-206 - 586 2.6e-17 62.4 63.9 2 12 0.22 1.4e+02 2.5 0.2 3 14 191 202 190 205 0.85 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF254-206 - 586 2.6e-17 62.4 63.9 3 12 0.00024 0.15 11.9 0.1 3 18 219 234 217 239 0.90 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF254-206 - 586 2.6e-17 62.4 63.9 4 12 0.00025 0.16 11.9 3.3 3 42 247 285 245 290 0.79 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF254-206 - 586 2.6e-17 62.4 63.9 5 12 0.45 2.9e+02 1.5 0.2 3 14 303 314 301 316 0.85 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF254-206 - 586 2.6e-17 62.4 63.9 6 12 0.29 1.8e+02 2.1 0.2 3 14 331 342 330 344 0.84 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF254-206 - 586 2.6e-17 62.4 63.9 7 12 0.00027 0.17 11.8 0.1 3 18 359 374 357 377 0.91 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF254-206 - 586 2.6e-17 62.4 63.9 8 12 0.00022 0.14 12.1 0.1 2 18 386 402 385 405 0.90 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF254-206 - 586 2.6e-17 62.4 63.9 9 12 0.033 21 5.1 0.1 3 14 415 426 413 430 0.88 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF254-206 - 586 2.6e-17 62.4 63.9 10 12 0.00063 0.4 10.6 4.6 3 46 443 485 441 486 0.84 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF254-206 - 586 2.6e-17 62.4 63.9 11 12 0.028 18 5.3 0.1 3 14 499 510 497 519 0.86 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF254-206 - 586 2.6e-17 62.4 63.9 12 12 0.0032 2 8.4 0.3 3 18 527 542 527 545 0.91 Probable zinc-ribbon domain zf-C2H2_11 PF16622.5 29 ZNF254-206 - 586 5.9e-17 61.1 41.4 1 14 0.0018 1.2 9.0 0.0 3 26 135 158 134 159 0.90 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF254-206 - 586 5.9e-17 61.1 41.4 2 14 0.15 95 2.9 0.1 5 25 193 213 192 215 0.77 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF254-206 - 586 5.9e-17 61.1 41.4 3 14 0.16 1e+02 2.8 0.0 5 20 221 236 218 243 0.73 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF254-206 - 586 5.9e-17 61.1 41.4 4 14 0.0044 2.8 7.8 0.1 5 26 249 270 247 271 0.93 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF254-206 - 586 5.9e-17 61.1 41.4 5 14 0.0043 2.8 7.8 0.1 5 26 277 298 274 299 0.89 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF254-206 - 586 5.9e-17 61.1 41.4 6 14 0.038 24 4.8 0.3 5 14 305 314 303 327 0.76 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF254-206 - 586 5.9e-17 61.1 41.4 7 14 0.18 1.1e+02 2.6 0.2 5 24 333 352 332 355 0.76 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF254-206 - 586 5.9e-17 61.1 41.4 8 14 0.011 7.3 6.5 0.0 5 26 361 382 358 383 0.92 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF254-206 - 586 5.9e-17 61.1 41.4 9 14 0.0038 2.5 8.0 0.0 5 26 389 410 386 411 0.92 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF254-206 - 586 5.9e-17 61.1 41.4 10 14 0.0044 2.8 7.8 0.1 5 26 417 438 414 439 0.89 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF254-206 - 586 5.9e-17 61.1 41.4 11 14 0.0065 4.2 7.2 0.0 5 26 445 466 442 467 0.90 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF254-206 - 586 5.9e-17 61.1 41.4 12 14 0.095 61 3.5 0.1 5 26 473 494 469 495 0.80 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF254-206 - 586 5.9e-17 61.1 41.4 13 14 0.14 88 3.0 0.1 5 23 501 519 498 523 0.74 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF254-206 - 586 5.9e-17 61.1 41.4 14 14 0.016 10 6.0 0.1 5 26 529 550 528 551 0.92 zinc-finger C2H2-type zf-C2H2_6 PF13912.6 27 ZNF254-206 - 586 6.5e-17 61.1 107.6 1 15 2 1.3e+03 -0.5 0.4 20 26 123 129 121 130 0.86 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF254-206 - 586 6.5e-17 61.1 107.6 2 15 0.00016 0.1 12.6 0.5 2 12 137 147 136 157 0.87 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF254-206 - 586 6.5e-17 61.1 107.6 3 15 2.1e-05 0.014 15.4 0.2 2 24 193 215 192 218 0.92 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF254-206 - 586 6.5e-17 61.1 107.6 4 15 0.084 54 3.9 3.4 2 23 221 242 221 246 0.76 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF254-206 - 586 6.5e-17 61.1 107.6 5 15 0.021 13 5.9 0.2 2 11 249 258 249 272 0.91 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF254-206 - 586 6.5e-17 61.1 107.6 6 15 0.00086 0.55 10.3 0.8 2 24 277 299 277 302 0.90 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF254-206 - 586 6.5e-17 61.1 107.6 7 15 9.4e-05 0.06 13.4 0.5 1 24 304 327 304 329 0.91 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF254-206 - 586 6.5e-17 61.1 107.6 8 15 8.5e-06 0.0055 16.7 0.4 2 24 333 355 332 358 0.92 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF254-206 - 586 6.5e-17 61.1 107.6 9 15 0.12 75 3.5 3.4 2 12 361 371 361 386 0.73 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF254-206 - 586 6.5e-17 61.1 107.6 10 15 0.021 13 5.9 0.2 2 11 389 398 389 412 0.91 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF254-206 - 586 6.5e-17 61.1 107.6 11 15 0.00018 0.11 12.5 1.1 2 24 417 439 417 442 0.90 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF254-206 - 586 6.5e-17 61.1 107.6 12 15 0.0027 1.7 8.7 0.5 2 24 445 467 445 470 0.83 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF254-206 - 586 6.5e-17 61.1 107.6 13 15 0.039 25 5.0 0.9 2 21 473 492 473 497 0.76 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF254-206 - 586 6.5e-17 61.1 107.6 14 15 0.003 1.9 8.6 1.8 2 12 501 511 501 520 0.92 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF254-206 - 586 6.5e-17 61.1 107.6 15 15 0.23 1.5e+02 2.6 4.0 2 11 529 538 529 553 0.80 C2H2-type zinc finger Zn-ribbon_8 PF09723.10 40 ZNF254-206 - 586 2.6e-15 56.2 89.1 1 14 0.0011 0.73 10.0 0.7 6 17 137 154 136 169 0.66 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF254-206 - 586 2.6e-15 56.2 89.1 2 14 0.0008 0.51 10.5 6.5 6 34 193 228 192 230 0.86 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF254-206 - 586 2.6e-15 56.2 89.1 3 14 0.0019 1.2 9.3 6.6 6 34 221 256 219 258 0.88 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF254-206 - 586 2.6e-15 56.2 89.1 4 14 0.00055 0.35 11.0 6.0 6 35 249 285 248 289 0.87 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF254-206 - 586 2.6e-15 56.2 89.1 5 14 0.0043 2.8 8.2 0.7 6 17 277 288 276 297 0.83 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF254-206 - 586 2.6e-15 56.2 89.1 6 14 0.0024 1.5 9.0 0.0 6 20 305 319 304 326 0.85 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF254-206 - 586 2.6e-15 56.2 89.1 7 14 0.00052 0.33 11.1 5.9 6 34 333 368 332 370 0.86 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF254-206 - 586 2.6e-15 56.2 89.1 8 14 0.0014 0.89 9.7 6.2 6 34 361 396 360 399 0.87 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF254-206 - 586 2.6e-15 56.2 89.1 9 14 0.0013 0.85 9.8 7.0 6 34 389 424 388 428 0.87 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF254-206 - 586 2.6e-15 56.2 89.1 10 14 0.0011 0.74 10.0 6.9 6 34 417 452 415 452 0.86 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF254-206 - 586 2.6e-15 56.2 89.1 11 14 7.6e-05 0.049 13.8 5.0 6 36 445 482 444 485 0.80 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF254-206 - 586 2.6e-15 56.2 89.1 12 14 0.005 3.2 8.0 0.5 6 16 473 483 472 495 0.85 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF254-206 - 586 2.6e-15 56.2 89.1 13 14 0.0016 1 9.6 7.0 6 34 501 536 500 538 0.74 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF254-206 - 586 2.6e-15 56.2 89.1 14 14 0.024 15 5.8 1.1 6 15 529 538 528 543 0.92 Zinc ribbon domain # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF254-206.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF254-206.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF254-206.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF254-206.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF254-206.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:02:33 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZNF254-207 - 618 6.7e-104 336.1 135.9 1 18 1.4 8.6e+02 0.7 0.2 13 24 111 122 107 124 0.82 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF254-207 - 618 6.7e-104 336.1 135.9 2 18 0.24 1.5e+02 3.1 1.2 8 19 134 145 132 151 0.83 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF254-207 - 618 6.7e-104 336.1 135.9 3 18 0.0012 0.75 10.3 4.9 5 25 159 179 154 179 0.75 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF254-207 - 618 6.7e-104 336.1 135.9 4 18 0.0052 3.2 8.3 0.4 2 22 184 204 183 205 0.88 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF254-207 - 618 6.7e-104 336.1 135.9 5 18 1.2e-06 0.00071 19.9 0.1 2 25 212 235 211 236 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF254-207 - 618 6.7e-104 336.1 135.9 6 18 9.8e-11 6.1e-08 32.8 0.3 1 24 239 262 239 263 0.97 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF254-207 - 618 6.7e-104 336.1 135.9 7 18 7.6e-09 4.7e-06 26.8 2.4 2 24 268 290 267 291 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF254-207 - 618 6.7e-104 336.1 135.9 8 18 3e-12 1.9e-09 37.5 1.5 2 25 296 319 295 320 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF254-207 - 618 6.7e-104 336.1 135.9 9 18 4.2e-09 2.6e-06 27.6 1.0 2 26 324 348 323 348 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF254-207 - 618 6.7e-104 336.1 135.9 10 18 3.8e-07 0.00024 21.4 0.4 2 25 352 375 351 376 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF254-207 - 618 6.7e-104 336.1 135.9 11 18 9.8e-11 6.1e-08 32.8 0.3 1 24 379 402 379 403 0.97 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF254-207 - 618 6.7e-104 336.1 135.9 12 18 4.9e-10 3e-07 30.6 2.0 2 24 408 430 407 431 0.97 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF254-207 - 618 6.7e-104 336.1 135.9 13 18 4.8e-12 2.9e-09 36.9 1.9 2 25 436 459 435 460 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF254-207 - 618 6.7e-104 336.1 135.9 14 18 2.9e-10 1.8e-07 31.2 0.7 2 25 464 487 463 487 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF254-207 - 618 6.7e-104 336.1 135.9 15 18 5.2e-10 3.2e-07 30.5 2.6 2 26 492 516 491 516 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF254-207 - 618 6.7e-104 336.1 135.9 16 18 3.2e-11 2e-08 34.3 1.6 2 25 520 543 520 544 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF254-207 - 618 6.7e-104 336.1 135.9 17 18 4.7e-08 2.9e-05 24.3 2.4 3 24 549 570 548 571 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF254-207 - 618 6.7e-104 336.1 135.9 18 18 0.00033 0.2 12.1 0.3 2 16 576 590 575 592 0.94 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZNF254-207 - 618 8.8e-69 224.3 104.6 1 16 7e-06 0.0043 17.4 0.6 1 21 169 189 169 190 0.95 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF254-207 - 618 8.8e-69 224.3 104.6 2 16 3.9 2.4e+03 -0.7 0.1 11 23 207 219 197 219 0.77 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF254-207 - 618 8.8e-69 224.3 104.6 3 16 3.9e-08 2.4e-05 24.5 0.2 1 23 225 247 225 247 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF254-207 - 618 8.8e-69 224.3 104.6 4 16 1.7e-05 0.01 16.2 0.2 1 23 253 275 253 275 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF254-207 - 618 8.8e-69 224.3 104.6 5 16 1.1e-06 0.0007 19.9 0.6 1 23 281 303 281 303 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF254-207 - 618 8.8e-69 224.3 104.6 6 16 6.1e-08 3.8e-05 23.9 0.4 1 23 309 331 309 331 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF254-207 - 618 8.8e-69 224.3 104.6 7 16 4.4e-07 0.00027 21.2 0.5 1 23 337 359 337 359 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF254-207 - 618 8.8e-69 224.3 104.6 8 16 2.1e-08 1.3e-05 25.4 0.5 1 23 365 387 365 387 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF254-207 - 618 8.8e-69 224.3 104.6 9 16 1.5e-06 0.00095 19.5 0.4 1 23 393 415 393 415 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF254-207 - 618 8.8e-69 224.3 104.6 10 16 1.1e-06 0.0007 19.9 0.6 1 23 421 443 421 443 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF254-207 - 618 8.8e-69 224.3 104.6 11 16 2.4e-08 1.5e-05 25.2 0.8 1 23 449 471 449 471 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF254-207 - 618 8.8e-69 224.3 104.6 12 16 4.6e-06 0.0028 18.0 0.3 1 23 477 499 477 499 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF254-207 - 618 8.8e-69 224.3 104.6 13 16 5.1e-07 0.00031 21.0 1.0 1 23 505 527 505 527 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF254-207 - 618 8.8e-69 224.3 104.6 14 16 8.2e-08 5.1e-05 23.5 1.8 1 23 533 555 533 555 0.95 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF254-207 - 618 8.8e-69 224.3 104.6 15 16 5.1e-06 0.0031 17.9 0.9 1 23 561 583 561 583 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF254-207 - 618 8.8e-69 224.3 104.6 16 16 0.37 2.3e+02 2.5 0.0 7 17 595 605 595 606 0.91 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZNF254-207 - 618 2.6e-33 111.8 98.8 1 14 0.00032 0.2 12.6 0.5 1 21 169 189 169 191 0.89 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF254-207 - 618 2.6e-33 111.8 98.8 2 14 8.3e-05 0.051 14.4 0.2 1 23 225 247 225 248 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF254-207 - 618 2.6e-33 111.8 98.8 3 14 0.0072 4.5 8.4 0.4 1 23 253 275 253 276 0.82 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF254-207 - 618 2.6e-33 111.8 98.8 4 14 0.00093 0.57 11.2 0.7 1 23 281 303 281 304 0.85 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF254-207 - 618 2.6e-33 111.8 98.8 5 14 2.6e-05 0.016 16.0 0.4 1 23 309 331 309 332 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF254-207 - 618 2.6e-33 111.8 98.8 6 14 0.00029 0.18 12.8 0.3 1 23 337 359 337 360 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF254-207 - 618 2.6e-33 111.8 98.8 7 14 3.3e-05 0.02 15.7 0.3 1 23 365 387 365 388 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF254-207 - 618 2.6e-33 111.8 98.8 8 14 0.0029 1.8 9.6 0.5 1 23 393 415 393 416 0.84 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF254-207 - 618 2.6e-33 111.8 98.8 9 14 0.00093 0.57 11.2 0.7 1 23 421 443 421 444 0.85 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF254-207 - 618 2.6e-33 111.8 98.8 10 14 8.5e-06 0.0052 17.5 0.7 1 23 449 471 449 472 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF254-207 - 618 2.6e-33 111.8 98.8 11 14 0.00081 0.5 11.3 0.4 1 23 477 499 477 500 0.89 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF254-207 - 618 2.6e-33 111.8 98.8 12 14 0.00012 0.075 13.9 0.8 1 23 505 527 505 528 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF254-207 - 618 2.6e-33 111.8 98.8 13 14 4e-05 0.024 15.4 1.3 1 23 533 555 533 556 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF254-207 - 618 2.6e-33 111.8 98.8 14 14 0.0022 1.3 10.0 1.0 1 23 561 583 561 584 0.85 C2H2-type zinc finger zf-C2H2_jaz PF12171.8 27 ZNF254-207 - 618 1.7e-25 88.7 56.8 1 14 0.00022 0.14 12.5 0.4 2 22 169 189 168 189 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF254-207 - 618 1.7e-25 88.7 56.8 2 14 0.017 11 6.5 0.1 2 21 225 244 224 245 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF254-207 - 618 1.7e-25 88.7 56.8 3 14 0.0038 2.4 8.6 0.1 2 22 253 273 252 273 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF254-207 - 618 1.7e-25 88.7 56.8 4 14 0.0071 4.4 7.7 0.0 2 22 281 301 280 301 0.91 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF254-207 - 618 1.7e-25 88.7 56.8 5 14 0.0023 1.4 9.3 0.1 2 21 309 328 308 329 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF254-207 - 618 1.7e-25 88.7 56.8 6 14 0.02 12 6.3 0.1 2 21 337 356 336 357 0.90 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF254-207 - 618 1.7e-25 88.7 56.8 7 14 0.00015 0.09 13.1 0.1 2 21 365 384 364 385 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF254-207 - 618 1.7e-25 88.7 56.8 8 14 0.0043 2.7 8.4 0.1 2 22 393 413 392 413 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF254-207 - 618 1.7e-25 88.7 56.8 9 14 0.0071 4.4 7.7 0.0 2 22 421 441 420 441 0.91 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF254-207 - 618 1.7e-25 88.7 56.8 10 14 0.0008 0.49 10.7 0.1 2 21 449 468 448 469 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF254-207 - 618 1.7e-25 88.7 56.8 11 14 0.0076 4.7 7.6 0.1 2 21 477 496 476 497 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF254-207 - 618 1.7e-25 88.7 56.8 12 14 0.073 45 4.5 0.3 2 22 505 525 504 525 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF254-207 - 618 1.7e-25 88.7 56.8 13 14 4e-05 0.025 14.9 0.2 2 21 533 552 532 553 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF254-207 - 618 1.7e-25 88.7 56.8 14 14 0.042 26 5.3 0.2 2 21 561 580 560 581 0.88 Zinc-finger double-stranded RNA-binding XPA_N PF01286.18 32 ZNF254-207 - 618 1.2e-24 86.0 58.3 1 14 0.0063 3.9 7.6 0.2 3 14 170 181 169 187 0.83 XPA protein N-terminal XPA_N PF01286.18 32 ZNF254-207 - 618 1.2e-24 86.0 58.3 2 14 0.0075 4.6 7.4 0.2 3 14 226 237 225 243 0.88 XPA protein N-terminal XPA_N PF01286.18 32 ZNF254-207 - 618 1.2e-24 86.0 58.3 3 14 0.0046 2.9 8.0 0.1 3 13 254 264 252 270 0.86 XPA protein N-terminal XPA_N PF01286.18 32 ZNF254-207 - 618 1.2e-24 86.0 58.3 4 14 0.0047 2.9 8.0 0.1 3 13 282 292 280 297 0.86 XPA protein N-terminal XPA_N PF01286.18 32 ZNF254-207 - 618 1.2e-24 86.0 58.3 5 14 0.00063 0.39 10.8 0.2 3 14 310 321 308 328 0.86 XPA protein N-terminal XPA_N PF01286.18 32 ZNF254-207 - 618 1.2e-24 86.0 58.3 6 14 0.0052 3.2 7.9 0.1 3 12 338 347 336 355 0.86 XPA protein N-terminal XPA_N PF01286.18 32 ZNF254-207 - 618 1.2e-24 86.0 58.3 7 14 0.0034 2.1 8.4 0.1 3 14 366 377 365 383 0.88 XPA protein N-terminal XPA_N PF01286.18 32 ZNF254-207 - 618 1.2e-24 86.0 58.3 8 14 0.0045 2.8 8.1 0.1 3 14 394 405 392 410 0.85 XPA protein N-terminal XPA_N PF01286.18 32 ZNF254-207 - 618 1.2e-24 86.0 58.3 9 14 0.0047 2.9 8.0 0.1 3 13 422 432 420 437 0.86 XPA protein N-terminal XPA_N PF01286.18 32 ZNF254-207 - 618 1.2e-24 86.0 58.3 10 14 0.0009 0.55 10.3 0.3 3 14 450 461 448 468 0.86 XPA protein N-terminal XPA_N PF01286.18 32 ZNF254-207 - 618 1.2e-24 86.0 58.3 11 14 0.0037 2.3 8.3 0.1 3 14 478 489 476 495 0.85 XPA protein N-terminal XPA_N PF01286.18 32 ZNF254-207 - 618 1.2e-24 86.0 58.3 12 14 0.00045 0.28 11.3 0.1 3 19 506 522 504 524 0.87 XPA protein N-terminal XPA_N PF01286.18 32 ZNF254-207 - 618 1.2e-24 86.0 58.3 13 14 0.0024 1.5 8.9 0.3 3 14 534 545 532 552 0.87 XPA protein N-terminal XPA_N PF01286.18 32 ZNF254-207 - 618 1.2e-24 86.0 58.3 14 14 0.0076 4.7 7.3 0.2 3 11 562 570 560 578 0.86 XPA protein N-terminal zf_UBZ PF18439.1 32 ZNF254-207 - 618 3.5e-19 68.1 62.1 1 16 1.2 7.3e+02 -0.1 0.0 24 29 48 53 48 54 0.96 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF254-207 - 618 3.5e-19 68.1 62.1 2 16 2.9 1.8e+03 -1.4 0.1 7 20 142 155 142 156 0.87 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF254-207 - 618 3.5e-19 68.1 62.1 3 16 0.0061 3.8 7.2 0.1 2 13 168 179 167 187 0.85 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF254-207 - 618 3.5e-19 68.1 62.1 4 16 0.0068 4.2 7.0 0.1 3 20 225 243 223 244 0.82 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF254-207 - 618 3.5e-19 68.1 62.1 5 16 0.0014 0.85 9.3 0.2 3 20 253 271 251 272 0.82 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF254-207 - 618 3.5e-19 68.1 62.1 6 16 0.014 8.8 6.0 0.1 3 12 281 290 279 299 0.85 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF254-207 - 618 3.5e-19 68.1 62.1 7 16 0.00062 0.38 10.4 0.2 3 20 309 327 307 328 0.88 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF254-207 - 618 3.5e-19 68.1 62.1 8 16 0.024 15 5.3 0.1 2 20 336 355 335 356 0.78 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF254-207 - 618 3.5e-19 68.1 62.1 9 16 0.0051 3.1 7.5 0.1 3 20 365 383 363 384 0.81 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF254-207 - 618 3.5e-19 68.1 62.1 10 16 0.012 7.4 6.3 0.1 3 12 393 402 391 412 0.80 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF254-207 - 618 3.5e-19 68.1 62.1 11 16 0.014 8.8 6.0 0.1 3 12 421 430 419 439 0.85 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF254-207 - 618 3.5e-19 68.1 62.1 12 16 0.00023 0.14 11.8 0.2 3 20 449 467 447 468 0.88 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF254-207 - 618 3.5e-19 68.1 62.1 13 16 0.012 7.1 6.3 0.1 3 13 477 487 475 496 0.81 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF254-207 - 618 3.5e-19 68.1 62.1 14 16 0.0037 2.3 7.9 0.1 3 16 505 518 503 524 0.82 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF254-207 - 618 3.5e-19 68.1 62.1 15 16 0.0026 1.6 8.4 0.2 3 15 533 545 531 552 0.78 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF254-207 - 618 3.5e-19 68.1 62.1 16 16 0.02 12 5.5 0.1 3 12 561 570 559 579 0.88 Ubiquitin-Binding Zinc Finger zf-trcl PF13451.6 48 ZNF254-207 - 618 5.6e-17 61.4 63.9 1 12 0.00073 0.45 10.4 0.3 3 18 167 182 165 205 0.85 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF254-207 - 618 5.6e-17 61.4 63.9 2 12 0.24 1.5e+02 2.4 0.2 3 14 223 234 222 237 0.85 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF254-207 - 618 5.6e-17 61.4 63.9 3 12 0.00027 0.16 11.9 0.1 3 18 251 266 249 271 0.90 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF254-207 - 618 5.6e-17 61.4 63.9 4 12 0.00028 0.17 11.8 3.3 3 42 279 317 277 322 0.79 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF254-207 - 618 5.6e-17 61.4 63.9 5 12 0.49 3e+02 1.4 0.2 3 14 335 346 333 348 0.85 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF254-207 - 618 5.6e-17 61.4 63.9 6 12 0.31 1.9e+02 2.0 0.2 3 14 363 374 362 376 0.84 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF254-207 - 618 5.6e-17 61.4 63.9 7 12 0.0003 0.18 11.7 0.1 3 18 391 406 389 409 0.91 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF254-207 - 618 5.6e-17 61.4 63.9 8 12 0.00024 0.15 12.0 0.1 2 18 418 434 417 437 0.90 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF254-207 - 618 5.6e-17 61.4 63.9 9 12 0.036 22 5.0 0.1 3 14 447 458 445 462 0.88 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF254-207 - 618 5.6e-17 61.4 63.9 10 12 0.00069 0.43 10.5 4.6 3 46 475 517 473 518 0.84 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF254-207 - 618 5.6e-17 61.4 63.9 11 12 0.031 19 5.2 0.1 3 14 531 542 529 551 0.86 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF254-207 - 618 5.6e-17 61.4 63.9 12 12 0.0035 2.1 8.3 0.3 3 18 559 574 559 577 0.91 Probable zinc-ribbon domain zf-C2H2_11 PF16622.5 29 ZNF254-207 - 618 1.4e-16 60.0 41.4 1 14 0.002 1.2 8.9 0.0 3 26 167 190 166 191 0.90 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF254-207 - 618 1.4e-16 60.0 41.4 2 14 0.16 1e+02 2.8 0.1 5 25 225 245 224 247 0.77 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF254-207 - 618 1.4e-16 60.0 41.4 3 14 0.18 1.1e+02 2.7 0.0 5 20 253 268 250 275 0.73 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF254-207 - 618 1.4e-16 60.0 41.4 4 14 0.0049 3 7.7 0.1 5 26 281 302 279 303 0.93 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF254-207 - 618 1.4e-16 60.0 41.4 5 14 0.0047 2.9 7.7 0.1 5 26 309 330 306 331 0.89 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF254-207 - 618 1.4e-16 60.0 41.4 6 14 0.041 26 4.7 0.3 5 14 337 346 335 359 0.76 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF254-207 - 618 1.4e-16 60.0 41.4 7 14 0.2 1.2e+02 2.5 0.2 5 24 365 384 364 387 0.75 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF254-207 - 618 1.4e-16 60.0 41.4 8 14 0.012 7.7 6.4 0.0 5 26 393 414 390 415 0.92 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF254-207 - 618 1.4e-16 60.0 41.4 9 14 0.0042 2.6 7.9 0.0 5 26 421 442 418 443 0.92 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF254-207 - 618 1.4e-16 60.0 41.4 10 14 0.0048 3 7.7 0.1 5 26 449 470 446 471 0.89 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF254-207 - 618 1.4e-16 60.0 41.4 11 14 0.0071 4.4 7.1 0.0 5 26 477 498 474 499 0.90 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF254-207 - 618 1.4e-16 60.0 41.4 12 14 0.1 65 3.4 0.1 5 26 505 526 501 527 0.80 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF254-207 - 618 1.4e-16 60.0 41.4 13 14 0.15 94 2.9 0.1 5 23 533 551 530 555 0.74 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF254-207 - 618 1.4e-16 60.0 41.4 14 14 0.018 11 5.9 0.1 5 26 561 582 560 583 0.92 zinc-finger C2H2-type zf-C2H2_6 PF13912.6 27 ZNF254-207 - 618 1.8e-16 59.7 107.6 1 15 2.2 1.4e+03 -0.5 0.4 20 26 155 161 153 162 0.86 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF254-207 - 618 1.8e-16 59.7 107.6 2 15 0.00017 0.11 12.6 0.5 2 12 169 179 168 189 0.87 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF254-207 - 618 1.8e-16 59.7 107.6 3 15 2.3e-05 0.014 15.3 0.2 2 24 225 247 224 250 0.92 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF254-207 - 618 1.8e-16 59.7 107.6 4 15 0.093 57 3.9 3.4 2 23 253 274 253 278 0.76 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF254-207 - 618 1.8e-16 59.7 107.6 5 15 0.023 14 5.8 0.2 2 11 281 290 281 304 0.91 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF254-207 - 618 1.8e-16 59.7 107.6 6 15 0.00094 0.58 10.2 0.8 2 24 309 331 309 334 0.90 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF254-207 - 618 1.8e-16 59.7 107.6 7 15 0.0001 0.064 13.3 0.5 1 24 336 359 336 361 0.91 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF254-207 - 618 1.8e-16 59.7 107.6 8 15 9.4e-06 0.0058 16.6 0.4 2 24 365 387 364 390 0.92 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF254-207 - 618 1.8e-16 59.7 107.6 9 15 0.13 83 3.4 3.4 2 12 393 403 393 418 0.73 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF254-207 - 618 1.8e-16 59.7 107.6 10 15 0.023 14 5.8 0.2 2 11 421 430 421 444 0.91 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF254-207 - 618 1.8e-16 59.7 107.6 11 15 0.0002 0.12 12.4 1.1 2 24 449 471 449 474 0.90 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF254-207 - 618 1.8e-16 59.7 107.6 12 15 0.003 1.8 8.6 0.5 2 24 477 499 477 502 0.83 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF254-207 - 618 1.8e-16 59.7 107.6 13 15 0.043 27 4.9 0.9 2 21 505 524 505 529 0.76 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF254-207 - 618 1.8e-16 59.7 107.6 14 15 0.0033 2 8.5 1.8 2 12 533 543 533 552 0.92 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF254-207 - 618 1.8e-16 59.7 107.6 15 15 0.25 1.5e+02 2.5 4.0 2 11 561 570 561 585 0.80 C2H2-type zinc finger Zn-ribbon_8 PF09723.10 40 ZNF254-207 - 618 5.1e-15 55.3 89.2 1 14 0.0013 0.78 9.9 0.7 6 17 169 186 168 201 0.66 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF254-207 - 618 5.1e-15 55.3 89.2 2 14 0.00094 0.58 10.3 6.6 6 34 225 260 224 262 0.86 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF254-207 - 618 5.1e-15 55.3 89.2 3 14 0.0019 1.2 9.3 6.5 6 34 253 288 251 290 0.88 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF254-207 - 618 5.1e-15 55.3 89.2 4 14 0.00075 0.47 10.6 6.4 6 35 281 317 279 321 0.87 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF254-207 - 618 5.1e-15 55.3 89.2 5 14 0.0052 3.2 7.9 0.8 6 17 309 320 307 328 0.84 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF254-207 - 618 5.1e-15 55.3 89.2 6 14 0.0026 1.6 8.9 0.0 6 20 337 351 336 358 0.85 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF254-207 - 618 5.1e-15 55.3 89.2 7 14 0.00061 0.38 10.9 6.0 6 34 365 400 364 402 0.86 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF254-207 - 618 5.1e-15 55.3 89.2 8 14 0.0013 0.83 9.8 6.0 6 34 393 428 392 431 0.87 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF254-207 - 618 5.1e-15 55.3 89.2 9 14 0.0012 0.74 10.0 6.7 6 34 421 456 420 460 0.87 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF254-207 - 618 5.1e-15 55.3 89.2 10 14 0.00068 0.42 10.8 6.5 6 34 449 484 448 485 0.86 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF254-207 - 618 5.1e-15 55.3 89.2 11 14 8.5e-05 0.053 13.7 5.0 6 36 477 514 476 517 0.80 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF254-207 - 618 5.1e-15 55.3 89.2 12 14 0.0055 3.4 7.9 0.5 6 16 505 515 503 527 0.86 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF254-207 - 618 5.1e-15 55.3 89.2 13 14 0.0016 0.99 9.6 6.9 6 34 533 568 531 570 0.74 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF254-207 - 618 5.1e-15 55.3 89.2 14 14 0.024 15 5.8 1.0 6 15 561 570 558 575 0.93 Zinc ribbon domain # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF254-207.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF254-207.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF254-207.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF254-207.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF254-207.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:02:33 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZNF254-208 - 574 1.6e-104 338.1 135.9 1 18 1.2 7.9e+02 0.8 0.2 13 24 67 78 63 80 0.82 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF254-208 - 574 1.6e-104 338.1 135.9 2 18 0.21 1.4e+02 3.2 1.2 8 19 90 101 88 107 0.83 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF254-208 - 574 1.6e-104 338.1 135.9 3 18 0.0011 0.69 10.5 4.9 5 25 115 135 110 135 0.75 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF254-208 - 574 1.6e-104 338.1 135.9 4 18 0.0046 2.9 8.5 0.4 2 22 140 160 139 161 0.88 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF254-208 - 574 1.6e-104 338.1 135.9 5 18 1e-06 0.00065 20.0 0.1 2 25 168 191 167 192 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF254-208 - 574 1.6e-104 338.1 135.9 6 18 8.7e-11 5.6e-08 32.9 0.3 1 24 195 218 195 219 0.97 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF254-208 - 574 1.6e-104 338.1 135.9 7 18 6.7e-09 4.3e-06 26.9 2.4 2 24 224 246 223 247 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF254-208 - 574 1.6e-104 338.1 135.9 8 18 2.6e-12 1.7e-09 37.7 1.5 2 25 252 275 251 276 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF254-208 - 574 1.6e-104 338.1 135.9 9 18 3.7e-09 2.4e-06 27.7 1.0 2 26 280 304 279 304 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF254-208 - 574 1.6e-104 338.1 135.9 10 18 3.4e-07 0.00022 21.5 0.4 2 25 308 331 307 332 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF254-208 - 574 1.6e-104 338.1 135.9 11 18 8.7e-11 5.6e-08 32.9 0.3 1 24 335 358 335 359 0.97 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF254-208 - 574 1.6e-104 338.1 135.9 12 18 4.3e-10 2.8e-07 30.7 2.0 2 24 364 386 363 387 0.97 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF254-208 - 574 1.6e-104 338.1 135.9 13 18 4.2e-12 2.7e-09 37.0 1.9 2 25 392 415 391 416 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF254-208 - 574 1.6e-104 338.1 135.9 14 18 2.6e-10 1.7e-07 31.4 0.7 2 25 420 443 419 443 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF254-208 - 574 1.6e-104 338.1 135.9 15 18 4.6e-10 2.9e-07 30.6 2.6 2 26 448 472 447 472 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF254-208 - 574 1.6e-104 338.1 135.9 16 18 2.8e-11 1.8e-08 34.4 1.6 2 25 476 499 476 500 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF254-208 - 574 1.6e-104 338.1 135.9 17 18 4.1e-08 2.6e-05 24.4 2.4 3 24 505 526 504 527 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF254-208 - 574 1.6e-104 338.1 135.9 18 18 0.00029 0.19 12.3 0.3 2 16 532 546 531 548 0.94 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZNF254-208 - 574 2.9e-69 225.9 104.6 1 16 6.2e-06 0.004 17.5 0.6 1 21 125 145 125 146 0.95 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF254-208 - 574 2.9e-69 225.9 104.6 2 16 3.4 2.2e+03 -0.5 0.1 11 23 163 175 153 175 0.77 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF254-208 - 574 2.9e-69 225.9 104.6 3 16 3.5e-08 2.2e-05 24.6 0.2 1 23 181 203 181 203 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF254-208 - 574 2.9e-69 225.9 104.6 4 16 1.5e-05 0.0095 16.3 0.2 1 23 209 231 209 231 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF254-208 - 574 2.9e-69 225.9 104.6 5 16 1e-06 0.00064 20.0 0.6 1 23 237 259 237 259 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF254-208 - 574 2.9e-69 225.9 104.6 6 16 5.4e-08 3.5e-05 24.0 0.4 1 23 265 287 265 287 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF254-208 - 574 2.9e-69 225.9 104.6 7 16 3.9e-07 0.00025 21.3 0.5 1 23 293 315 293 315 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF254-208 - 574 2.9e-69 225.9 104.6 8 16 1.8e-08 1.2e-05 25.5 0.5 1 23 321 343 321 343 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF254-208 - 574 2.9e-69 225.9 104.6 9 16 1.4e-06 0.00087 19.6 0.4 1 23 349 371 349 371 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF254-208 - 574 2.9e-69 225.9 104.6 10 16 1e-06 0.00064 20.0 0.6 1 23 377 399 377 399 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF254-208 - 574 2.9e-69 225.9 104.6 11 16 2.1e-08 1.4e-05 25.3 0.8 1 23 405 427 405 427 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF254-208 - 574 2.9e-69 225.9 104.6 12 16 4e-06 0.0026 18.1 0.3 1 23 433 455 433 455 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF254-208 - 574 2.9e-69 225.9 104.6 13 16 4.5e-07 0.00029 21.1 1.0 1 23 461 483 461 483 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF254-208 - 574 2.9e-69 225.9 104.6 14 16 7.3e-08 4.6e-05 23.6 1.8 1 23 489 511 489 511 0.95 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF254-208 - 574 2.9e-69 225.9 104.6 15 16 4.5e-06 0.0029 18.0 0.9 1 23 517 539 517 539 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF254-208 - 574 2.9e-69 225.9 104.6 16 16 0.33 2.1e+02 2.7 0.0 7 17 551 561 551 562 0.91 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZNF254-208 - 574 7.5e-34 113.5 98.8 1 14 0.00028 0.18 12.7 0.5 1 21 125 145 125 147 0.89 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF254-208 - 574 7.5e-34 113.5 98.8 2 14 7.3e-05 0.047 14.5 0.2 1 23 181 203 181 204 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF254-208 - 574 7.5e-34 113.5 98.8 3 14 0.0064 4.1 8.5 0.4 1 23 209 231 209 232 0.82 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF254-208 - 574 7.5e-34 113.5 98.8 4 14 0.00082 0.53 11.3 0.7 1 23 237 259 237 260 0.85 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF254-208 - 574 7.5e-34 113.5 98.8 5 14 2.3e-05 0.015 16.1 0.4 1 23 265 287 265 288 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF254-208 - 574 7.5e-34 113.5 98.8 6 14 0.00025 0.16 12.9 0.3 1 23 293 315 293 316 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF254-208 - 574 7.5e-34 113.5 98.8 7 14 2.9e-05 0.019 15.8 0.3 1 23 321 343 321 344 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF254-208 - 574 7.5e-34 113.5 98.8 8 14 0.0025 1.6 9.8 0.5 1 23 349 371 349 372 0.84 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF254-208 - 574 7.5e-34 113.5 98.8 9 14 0.00082 0.53 11.3 0.7 1 23 377 399 377 400 0.85 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF254-208 - 574 7.5e-34 113.5 98.8 10 14 7.5e-06 0.0048 17.6 0.7 1 23 405 427 405 428 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF254-208 - 574 7.5e-34 113.5 98.8 11 14 0.00072 0.46 11.5 0.4 1 23 433 455 433 456 0.89 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF254-208 - 574 7.5e-34 113.5 98.8 12 14 0.00011 0.069 14.0 0.8 1 23 461 483 461 484 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF254-208 - 574 7.5e-34 113.5 98.8 13 14 3.5e-05 0.022 15.5 1.4 1 23 489 511 489 512 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF254-208 - 574 7.5e-34 113.5 98.8 14 14 0.0019 1.2 10.1 1.0 1 23 517 539 517 540 0.85 C2H2-type zinc finger zf-C2H2_jaz PF12171.8 27 ZNF254-208 - 574 5.5e-26 90.3 56.9 1 14 0.00019 0.12 12.6 0.4 2 22 125 145 124 145 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF254-208 - 574 5.5e-26 90.3 56.9 2 14 0.015 9.8 6.6 0.1 2 21 181 200 180 201 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF254-208 - 574 5.5e-26 90.3 56.9 3 14 0.0034 2.2 8.7 0.1 2 22 209 229 208 229 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF254-208 - 574 5.5e-26 90.3 56.9 4 14 0.0063 4 7.8 0.0 2 22 237 257 236 257 0.91 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF254-208 - 574 5.5e-26 90.3 56.9 5 14 0.0021 1.3 9.4 0.1 2 21 265 284 264 285 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF254-208 - 574 5.5e-26 90.3 56.9 6 14 0.017 11 6.4 0.1 2 21 293 312 292 313 0.90 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF254-208 - 574 5.5e-26 90.3 56.9 7 14 0.00013 0.083 13.2 0.1 2 21 321 340 320 341 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF254-208 - 574 5.5e-26 90.3 56.9 8 14 0.0039 2.5 8.5 0.1 2 22 349 369 348 369 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF254-208 - 574 5.5e-26 90.3 56.9 9 14 0.0063 4 7.8 0.0 2 22 377 397 376 397 0.91 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF254-208 - 574 5.5e-26 90.3 56.9 10 14 0.00071 0.45 10.9 0.1 2 21 405 424 404 425 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF254-208 - 574 5.5e-26 90.3 56.9 11 14 0.0067 4.3 7.7 0.1 2 21 433 452 432 453 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF254-208 - 574 5.5e-26 90.3 56.9 12 14 0.065 41 4.6 0.3 2 22 461 481 460 481 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF254-208 - 574 5.5e-26 90.3 56.9 13 14 3.5e-05 0.023 15.0 0.2 2 21 489 508 488 509 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF254-208 - 574 5.5e-26 90.3 56.9 14 14 0.037 24 5.4 0.2 2 21 517 536 516 537 0.88 Zinc-finger double-stranded RNA-binding XPA_N PF01286.18 32 ZNF254-208 - 574 3.9e-25 87.6 58.3 1 14 0.0056 3.6 7.7 0.2 3 14 126 137 125 143 0.83 XPA protein N-terminal XPA_N PF01286.18 32 ZNF254-208 - 574 3.9e-25 87.6 58.3 2 14 0.0067 4.3 7.5 0.2 3 14 182 193 181 199 0.88 XPA protein N-terminal XPA_N PF01286.18 32 ZNF254-208 - 574 3.9e-25 87.6 58.3 3 14 0.0041 2.6 8.1 0.1 3 13 210 220 208 226 0.86 XPA protein N-terminal XPA_N PF01286.18 32 ZNF254-208 - 574 3.9e-25 87.6 58.3 4 14 0.0042 2.7 8.1 0.1 3 13 238 248 236 253 0.86 XPA protein N-terminal XPA_N PF01286.18 32 ZNF254-208 - 574 3.9e-25 87.6 58.3 5 14 0.00056 0.36 10.9 0.2 3 14 266 277 264 284 0.86 XPA protein N-terminal XPA_N PF01286.18 32 ZNF254-208 - 574 3.9e-25 87.6 58.3 6 14 0.0046 3 8.0 0.1 3 12 294 303 292 311 0.86 XPA protein N-terminal XPA_N PF01286.18 32 ZNF254-208 - 574 3.9e-25 87.6 58.3 7 14 0.0031 2 8.6 0.1 3 14 322 333 321 339 0.88 XPA protein N-terminal XPA_N PF01286.18 32 ZNF254-208 - 574 3.9e-25 87.6 58.3 8 14 0.004 2.6 8.2 0.1 3 14 350 361 348 366 0.85 XPA protein N-terminal XPA_N PF01286.18 32 ZNF254-208 - 574 3.9e-25 87.6 58.3 9 14 0.0042 2.7 8.1 0.1 3 13 378 388 376 393 0.86 XPA protein N-terminal XPA_N PF01286.18 32 ZNF254-208 - 574 3.9e-25 87.6 58.3 10 14 0.0008 0.51 10.4 0.3 3 14 406 417 404 424 0.86 XPA protein N-terminal XPA_N PF01286.18 32 ZNF254-208 - 574 3.9e-25 87.6 58.3 11 14 0.0033 2.1 8.5 0.1 3 14 434 445 432 451 0.85 XPA protein N-terminal XPA_N PF01286.18 32 ZNF254-208 - 574 3.9e-25 87.6 58.3 12 14 0.0004 0.26 11.4 0.1 3 19 462 478 460 480 0.87 XPA protein N-terminal XPA_N PF01286.18 32 ZNF254-208 - 574 3.9e-25 87.6 58.3 13 14 0.0021 1.4 9.1 0.3 3 14 490 501 488 508 0.87 XPA protein N-terminal XPA_N PF01286.18 32 ZNF254-208 - 574 3.9e-25 87.6 58.3 14 14 0.0068 4.3 7.4 0.2 3 11 518 526 516 534 0.86 XPA protein N-terminal zf_UBZ PF18439.1 32 ZNF254-208 - 574 1.3e-19 69.4 62.5 1 16 1.1 6.7e+02 -0.0 0.0 24 29 4 9 4 10 0.96 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF254-208 - 574 1.3e-19 69.4 62.5 2 16 2.6 1.6e+03 -1.2 0.1 7 20 98 111 98 112 0.87 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF254-208 - 574 1.3e-19 69.4 62.5 3 16 0.0054 3.5 7.3 0.1 2 13 124 135 123 143 0.85 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF254-208 - 574 1.3e-19 69.4 62.5 4 16 0.0061 3.9 7.2 0.1 3 20 181 199 179 200 0.82 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF254-208 - 574 1.3e-19 69.4 62.5 5 16 0.0012 0.78 9.4 0.2 3 20 209 227 207 228 0.82 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF254-208 - 574 1.3e-19 69.4 62.5 6 16 0.011 7.3 6.3 0.1 3 12 237 246 235 256 0.82 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF254-208 - 574 1.3e-19 69.4 62.5 7 16 0.00055 0.35 10.5 0.2 3 20 265 283 263 284 0.88 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF254-208 - 574 1.3e-19 69.4 62.5 8 16 0.021 13 5.4 0.1 2 20 292 311 291 312 0.78 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF254-208 - 574 1.3e-19 69.4 62.5 9 16 0.0045 2.9 7.6 0.1 3 20 321 339 319 340 0.81 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF254-208 - 574 1.3e-19 69.4 62.5 10 16 0.011 6.8 6.4 0.1 3 12 349 358 347 368 0.80 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF254-208 - 574 1.3e-19 69.4 62.5 11 16 0.011 7.3 6.3 0.1 3 12 377 386 375 396 0.82 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF254-208 - 574 1.3e-19 69.4 62.5 12 16 0.0002 0.13 11.9 0.2 3 20 405 423 403 424 0.88 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF254-208 - 574 1.3e-19 69.4 62.5 13 16 0.01 6.6 6.4 0.1 3 13 433 443 431 452 0.81 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF254-208 - 574 1.3e-19 69.4 62.5 14 16 0.0033 2.1 8.0 0.1 3 16 461 474 459 480 0.82 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF254-208 - 574 1.3e-19 69.4 62.5 15 16 0.0023 1.5 8.5 0.2 3 15 489 501 487 508 0.78 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF254-208 - 574 1.3e-19 69.4 62.5 16 16 0.018 11 5.7 0.1 3 12 517 526 515 535 0.88 Ubiquitin-Binding Zinc Finger zf-trcl PF13451.6 48 ZNF254-208 - 574 2e-17 62.8 63.9 1 12 0.00065 0.41 10.6 0.3 3 18 123 138 121 161 0.85 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF254-208 - 574 2e-17 62.8 63.9 2 12 0.21 1.4e+02 2.5 0.2 3 14 179 190 178 193 0.85 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF254-208 - 574 2e-17 62.8 63.9 3 12 0.00024 0.15 12.0 0.1 3 18 207 222 205 227 0.90 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF254-208 - 574 2e-17 62.8 63.9 4 12 0.00025 0.16 11.9 3.3 3 42 235 273 233 278 0.79 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF254-208 - 574 2e-17 62.8 63.9 5 12 0.44 2.8e+02 1.5 0.2 3 14 291 302 289 304 0.85 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF254-208 - 574 2e-17 62.8 63.9 6 12 0.28 1.8e+02 2.1 0.2 3 14 319 330 318 332 0.84 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF254-208 - 574 2e-17 62.8 63.9 7 12 0.00026 0.17 11.8 0.1 3 18 347 362 345 365 0.91 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF254-208 - 574 2e-17 62.8 63.9 8 12 0.00022 0.14 12.1 0.1 2 18 374 390 373 393 0.90 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF254-208 - 574 2e-17 62.8 63.9 9 12 0.032 21 5.1 0.1 3 14 403 414 401 418 0.88 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF254-208 - 574 2e-17 62.8 63.9 10 12 0.00061 0.39 10.6 4.6 3 46 431 473 429 474 0.84 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF254-208 - 574 2e-17 62.8 63.9 11 12 0.027 18 5.4 0.1 3 14 487 498 485 507 0.86 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF254-208 - 574 2e-17 62.8 63.9 12 12 0.0031 2 8.4 0.3 3 18 515 530 515 533 0.91 Probable zinc-ribbon domain zf-C2H2_11 PF16622.5 29 ZNF254-208 - 574 4.3e-17 61.5 41.4 1 14 0.0018 1.1 9.0 0.0 3 26 123 146 122 147 0.90 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF254-208 - 574 4.3e-17 61.5 41.4 2 14 0.15 93 2.9 0.1 5 25 181 201 180 203 0.77 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF254-208 - 574 4.3e-17 61.5 41.4 3 14 0.16 1e+02 2.8 0.0 5 20 209 224 206 231 0.73 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF254-208 - 574 4.3e-17 61.5 41.4 4 14 0.0043 2.8 7.8 0.1 5 26 237 258 235 259 0.93 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF254-208 - 574 4.3e-17 61.5 41.4 5 14 0.0042 2.7 7.8 0.1 5 26 265 286 262 287 0.89 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF254-208 - 574 4.3e-17 61.5 41.4 6 14 0.037 24 4.8 0.3 5 14 293 302 291 315 0.76 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF254-208 - 574 4.3e-17 61.5 41.4 7 14 0.18 1.1e+02 2.7 0.2 5 24 321 340 320 343 0.76 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF254-208 - 574 4.3e-17 61.5 41.4 8 14 0.011 7.1 6.5 0.0 5 26 349 370 346 371 0.92 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF254-208 - 574 4.3e-17 61.5 41.4 9 14 0.0038 2.4 8.0 0.0 5 26 377 398 374 399 0.92 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF254-208 - 574 4.3e-17 61.5 41.4 10 14 0.0043 2.8 7.8 0.1 5 26 405 426 402 427 0.89 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF254-208 - 574 4.3e-17 61.5 41.4 11 14 0.0063 4.1 7.3 0.0 5 26 433 454 430 455 0.90 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF254-208 - 574 4.3e-17 61.5 41.4 12 14 0.093 60 3.5 0.1 5 26 461 482 457 483 0.81 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF254-208 - 574 4.3e-17 61.5 41.4 13 14 0.13 86 3.0 0.1 5 23 489 507 486 511 0.74 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF254-208 - 574 4.3e-17 61.5 41.4 14 14 0.016 10 6.0 0.1 5 26 517 538 516 539 0.92 zinc-finger C2H2-type zf-C2H2_6 PF13912.6 27 ZNF254-208 - 574 4.5e-17 61.6 107.6 1 15 2 1.3e+03 -0.4 0.4 20 26 111 117 109 118 0.86 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF254-208 - 574 4.5e-17 61.6 107.6 2 15 0.00015 0.099 12.7 0.5 2 12 125 135 124 145 0.87 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF254-208 - 574 4.5e-17 61.6 107.6 3 15 2.1e-05 0.013 15.5 0.2 2 24 181 203 180 206 0.92 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF254-208 - 574 4.5e-17 61.6 107.6 4 15 0.083 53 4.0 3.4 2 23 209 230 209 234 0.76 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF254-208 - 574 4.5e-17 61.6 107.6 5 15 0.02 13 5.9 0.2 2 11 237 246 237 260 0.91 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF254-208 - 574 4.5e-17 61.6 107.6 6 15 0.00084 0.54 10.3 0.8 2 24 265 287 265 290 0.90 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF254-208 - 574 4.5e-17 61.6 107.6 7 15 9.1e-05 0.059 13.4 0.5 1 24 292 315 292 317 0.91 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF254-208 - 574 4.5e-17 61.6 107.6 8 15 8.3e-06 0.0053 16.7 0.4 2 24 321 343 320 346 0.92 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF254-208 - 574 4.5e-17 61.6 107.6 9 15 0.11 73 3.5 3.4 2 12 349 359 349 374 0.73 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF254-208 - 574 4.5e-17 61.6 107.6 10 15 0.02 13 5.9 0.2 2 11 377 386 377 400 0.91 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF254-208 - 574 4.5e-17 61.6 107.6 11 15 0.00017 0.11 12.5 1.1 2 24 405 427 405 430 0.90 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF254-208 - 574 4.5e-17 61.6 107.6 12 15 0.0026 1.7 8.7 0.5 2 24 433 455 433 458 0.83 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF254-208 - 574 4.5e-17 61.6 107.6 13 15 0.038 24 5.0 0.9 2 21 461 480 461 485 0.76 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF254-208 - 574 4.5e-17 61.6 107.6 14 15 0.0029 1.9 8.6 1.8 2 12 489 499 489 508 0.92 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF254-208 - 574 4.5e-17 61.6 107.6 15 15 0.22 1.4e+02 2.6 4.0 2 11 517 526 517 541 0.80 C2H2-type zinc finger Zn-ribbon_8 PF09723.10 40 ZNF254-208 - 574 8.1e-17 61.1 84.1 1 14 0.0011 0.71 10.0 0.7 6 17 125 142 124 157 0.66 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF254-208 - 574 8.1e-17 61.1 84.1 2 14 0.00078 0.5 10.5 6.5 6 34 181 216 180 218 0.86 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF254-208 - 574 8.1e-17 61.1 84.1 3 14 0.0018 1.2 9.4 6.6 6 34 209 244 207 246 0.88 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF254-208 - 574 8.1e-17 61.1 84.1 4 14 0.00054 0.35 11.0 6.1 6 35 237 273 236 277 0.87 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF254-208 - 574 8.1e-17 61.1 84.1 5 14 0.0042 2.7 8.2 0.7 6 17 265 276 264 285 0.83 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF254-208 - 574 8.1e-17 61.1 84.1 6 14 0.0023 1.5 9.0 0.0 6 20 293 307 292 314 0.85 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF254-208 - 574 8.1e-17 61.1 84.1 7 14 0.00054 0.35 11.0 6.0 6 34 321 356 320 358 0.86 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF254-208 - 574 8.1e-17 61.1 84.1 8 14 0.0012 0.77 9.9 6.1 6 34 349 384 348 387 0.87 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF254-208 - 574 8.1e-17 61.1 84.1 9 14 0.0011 0.71 10.0 6.5 6 34 377 412 376 415 0.88 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF254-208 - 574 8.1e-17 61.1 84.1 10 14 0.00055 0.35 11.0 6.4 6 34 405 440 404 441 0.86 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF254-208 - 574 8.1e-17 61.1 84.1 11 14 5.8e-05 0.037 14.2 4.6 6 36 433 470 432 473 0.80 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF254-208 - 574 8.1e-17 61.1 84.1 12 14 0.0047 3 8.0 0.4 6 16 461 471 460 484 0.85 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF254-208 - 574 8.1e-17 61.1 84.1 13 14 0.0016 1 9.5 7.1 6 34 489 524 488 526 0.74 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF254-208 - 574 8.1e-17 61.1 84.1 14 14 0.024 16 5.7 1.1 6 15 517 526 516 531 0.92 Zinc ribbon domain # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF254-208.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF254-208.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF254-208.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF254-208.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF254-208.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:02:34 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZNF256-201 - 627 3.2e-102 330.8 108.4 1 16 0.0038 4 8.0 0.6 1 16 104 119 104 126 0.85 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF256-201 - 627 3.2e-102 330.8 108.4 2 16 7.6e-05 0.08 13.4 0.0 4 26 223 250 221 250 0.79 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF256-201 - 627 3.2e-102 330.8 108.4 3 16 3.5e-10 3.7e-07 30.3 0.3 1 24 253 276 253 278 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF256-201 - 627 3.2e-102 330.8 108.4 4 16 5.4e-09 5.7e-06 26.5 0.3 2 25 282 305 281 306 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF256-201 - 627 3.2e-102 330.8 108.4 5 16 3.3e-11 3.5e-08 33.5 0.6 5 26 313 334 309 334 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF256-201 - 627 3.2e-102 330.8 108.4 6 16 6.2e-10 6.5e-07 29.5 0.3 2 26 338 362 337 362 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF256-201 - 627 3.2e-102 330.8 108.4 7 16 2.9e-09 3e-06 27.4 0.2 2 25 366 389 365 390 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF256-201 - 627 3.2e-102 330.8 108.4 8 16 3.9e-09 4.1e-06 27.0 0.7 1 25 393 417 393 418 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF256-201 - 627 3.2e-102 330.8 108.4 9 16 1.2e-06 0.0012 19.1 2.8 4 25 424 445 422 446 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF256-201 - 627 3.2e-102 330.8 108.4 10 16 3e-11 3.2e-08 33.6 0.6 2 25 450 473 449 474 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF256-201 - 627 3.2e-102 330.8 108.4 11 16 5.1e-08 5.4e-05 23.4 0.5 2 26 478 502 477 502 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF256-201 - 627 3.2e-102 330.8 108.4 12 16 1.4e-10 1.4e-07 31.6 0.3 3 25 507 529 506 530 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF256-201 - 627 3.2e-102 330.8 108.4 13 16 1.2e-10 1.3e-07 31.7 0.3 2 26 534 558 533 558 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF256-201 - 627 3.2e-102 330.8 108.4 14 16 1.3e-12 1.4e-09 38.0 0.4 1 25 561 585 561 586 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF256-201 - 627 3.2e-102 330.8 108.4 15 16 1.7e-10 1.8e-07 31.3 0.3 1 25 589 613 589 613 0.97 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF256-201 - 627 3.2e-102 330.8 108.4 16 16 3.8 4e+03 -1.4 0.2 1 11 617 627 617 627 0.89 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZNF256-201 - 627 9e-78 252.6 141.6 1 17 0.0021 2.2 8.9 0.3 2 23 91 112 91 113 0.93 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF256-201 - 627 9e-78 252.6 141.6 2 17 9.2 9.7e+03 -2.6 1.3 13 23 130 140 123 140 0.74 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF256-201 - 627 9e-78 252.6 141.6 3 17 4.4 4.6e+03 -1.6 0.1 5 19 215 229 214 230 0.65 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF256-201 - 627 9e-78 252.6 141.6 4 17 1.8e-07 0.00019 21.7 2.6 1 23 239 261 239 261 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF256-201 - 627 9e-78 252.6 141.6 5 17 7.2e-09 7.6e-06 26.1 0.7 1 23 267 289 267 289 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF256-201 - 627 9e-78 252.6 141.6 6 17 1.2e-07 0.00013 22.2 1.2 1 23 295 317 295 317 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF256-201 - 627 9e-78 252.6 141.6 7 17 2.2e-09 2.3e-06 27.7 2.6 1 23 323 345 323 345 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF256-201 - 627 9e-78 252.6 141.6 8 17 6.2e-09 6.5e-06 26.3 1.2 1 23 351 373 351 373 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF256-201 - 627 9e-78 252.6 141.6 9 17 2.1e-07 0.00023 21.5 5.6 1 23 379 401 379 401 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF256-201 - 627 9e-78 252.6 141.6 10 17 8.7e-06 0.0091 16.4 2.3 1 23 407 429 407 429 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF256-201 - 627 9e-78 252.6 141.6 11 17 4.7e-07 0.0005 20.4 2.2 1 23 435 457 435 457 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF256-201 - 627 9e-78 252.6 141.6 12 17 2.9e-06 0.003 17.9 2.1 1 23 463 485 463 485 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF256-201 - 627 9e-78 252.6 141.6 13 17 4.3e-09 4.6e-06 26.8 1.4 1 23 491 513 491 513 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF256-201 - 627 9e-78 252.6 141.6 14 17 4.7e-09 5e-06 26.7 1.5 1 23 519 541 519 541 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF256-201 - 627 9e-78 252.6 141.6 15 17 4.7e-08 4.9e-05 23.5 2.5 1 23 547 569 547 569 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF256-201 - 627 9e-78 252.6 141.6 16 17 1.9e-10 2.1e-07 31.0 0.8 1 23 575 597 575 597 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF256-201 - 627 9e-78 252.6 141.6 17 17 1.3e-08 1.4e-05 25.3 1.1 1 23 603 625 603 625 0.98 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZNF256-201 - 627 3.1e-40 133.4 140.9 1 17 0.0022 2.3 9.3 0.3 2 24 91 113 90 113 0.97 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF256-201 - 627 3.1e-40 133.4 140.9 2 17 3.9 4.1e+03 -0.8 0.7 6 23 123 140 122 141 0.68 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF256-201 - 627 3.1e-40 133.4 140.9 3 17 8 8.5e+03 -1.8 0.2 6 24 216 229 215 230 0.48 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF256-201 - 627 3.1e-40 133.4 140.9 4 17 6e-07 0.00064 20.4 2.5 1 23 239 261 239 262 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF256-201 - 627 3.1e-40 133.4 140.9 5 17 3.7e-05 0.039 14.8 0.4 1 23 267 289 267 290 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF256-201 - 627 3.1e-40 133.4 140.9 6 17 3.2e-05 0.034 15.0 0.9 1 23 295 317 295 318 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF256-201 - 627 3.1e-40 133.4 140.9 7 17 1e-05 0.01 16.6 2.1 1 23 323 345 323 346 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF256-201 - 627 3.1e-40 133.4 140.9 8 17 7.2e-05 0.076 13.9 1.2 1 23 351 373 351 374 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF256-201 - 627 3.1e-40 133.4 140.9 9 17 2.5e-05 0.026 15.3 4.1 1 23 379 401 379 402 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF256-201 - 627 3.1e-40 133.4 140.9 10 17 0.00028 0.29 12.1 2.0 1 23 407 429 407 430 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF256-201 - 627 3.1e-40 133.4 140.9 11 17 0.00015 0.16 12.9 2.2 1 23 435 457 435 458 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF256-201 - 627 3.1e-40 133.4 140.9 12 17 1.1e-06 0.0012 19.5 2.7 1 23 463 485 463 486 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF256-201 - 627 3.1e-40 133.4 140.9 13 17 2.4e-05 0.025 15.4 1.3 1 23 491 513 491 514 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF256-201 - 627 3.1e-40 133.4 140.9 14 17 7.2e-06 0.0076 17.0 1.2 1 23 519 541 519 542 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF256-201 - 627 3.1e-40 133.4 140.9 15 17 0.0016 1.7 9.7 2.9 1 23 547 569 547 570 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF256-201 - 627 3.1e-40 133.4 140.9 16 17 1.6e-06 0.0017 19.0 0.7 1 23 575 597 575 598 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF256-201 - 627 3.1e-40 133.4 140.9 17 17 0.00017 0.18 12.7 1.1 1 23 603 625 603 626 0.91 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF256-201 - 627 9.4e-23 79.7 118.2 1 15 4.2 4.4e+03 -2.1 0.2 4 25 92 113 91 115 0.66 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF256-201 - 627 9.4e-23 79.7 118.2 2 15 0.00014 0.15 12.1 2.9 2 24 239 261 238 264 0.87 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF256-201 - 627 9.4e-23 79.7 118.2 3 15 0.00029 0.31 11.1 0.7 2 24 267 289 267 291 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF256-201 - 627 9.4e-23 79.7 118.2 4 15 0.00017 0.18 11.8 0.4 2 18 295 311 295 319 0.82 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF256-201 - 627 9.4e-23 79.7 118.2 5 15 2.7e-05 0.028 14.4 2.8 2 22 323 343 323 346 0.91 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF256-201 - 627 9.4e-23 79.7 118.2 6 15 0.00011 0.12 12.4 1.4 2 22 351 371 351 374 0.83 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF256-201 - 627 9.4e-23 79.7 118.2 7 15 0.0027 2.9 8.0 3.6 2 22 379 399 379 402 0.82 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF256-201 - 627 9.4e-23 79.7 118.2 8 15 0.00053 0.56 10.3 1.0 2 13 407 418 407 418 0.92 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF256-201 - 627 9.4e-23 79.7 118.2 9 15 0.00026 0.27 11.3 0.9 2 13 435 446 434 457 0.86 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF256-201 - 627 9.4e-23 79.7 118.2 10 15 0.00025 0.26 11.3 1.2 2 11 463 472 463 473 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF256-201 - 627 9.4e-23 79.7 118.2 11 15 0.0054 5.7 7.1 0.9 2 11 491 500 491 502 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF256-201 - 627 9.4e-23 79.7 118.2 12 15 1.2e-05 0.013 15.5 1.4 2 24 519 541 519 544 0.96 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF256-201 - 627 9.4e-23 79.7 118.2 13 15 0.0003 0.32 11.1 2.1 2 24 547 569 547 572 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF256-201 - 627 9.4e-23 79.7 118.2 14 15 2e-05 0.021 14.8 1.2 2 24 575 597 575 600 0.86 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF256-201 - 627 9.4e-23 79.7 118.2 15 15 0.17 1.8e+02 2.3 0.5 2 11 603 612 603 619 0.91 C2H2-type zinc finger KRAB PF01352.27 42 ZNF256-201 - 627 1.7e-21 75.6 0.3 1 1 2.9e-24 3e-21 74.8 0.3 2 42 14 54 13 54 0.98 KRAB box zf_UBZ PF18439.1 32 ZNF256-201 - 627 7.5e-13 47.8 72.5 1 15 0.95 1e+03 -0.6 0.1 2 11 89 98 88 109 0.71 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF256-201 - 627 7.5e-13 47.8 72.5 2 15 0.00074 0.78 9.4 0.4 2 20 238 257 237 258 0.82 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF256-201 - 627 7.5e-13 47.8 72.5 3 15 0.0092 9.7 5.9 0.1 3 16 267 281 265 286 0.76 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF256-201 - 627 7.5e-13 47.8 72.5 4 15 0.025 26 4.5 0.1 4 13 296 305 294 314 0.77 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF256-201 - 627 7.5e-13 47.8 72.5 5 15 0.00016 0.17 11.5 0.3 3 21 323 342 321 342 0.89 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF256-201 - 627 7.5e-13 47.8 72.5 6 15 0.00088 0.93 9.1 0.3 3 21 351 370 349 370 0.86 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF256-201 - 627 7.5e-13 47.8 72.5 7 15 0.0041 4.4 7.0 0.9 3 15 379 391 377 398 0.84 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF256-201 - 627 7.5e-13 47.8 72.5 8 15 0.021 22 4.7 0.1 3 12 407 416 405 419 0.87 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF256-201 - 627 7.5e-13 47.8 72.5 9 15 0.098 1e+02 2.6 0.2 3 14 435 446 433 454 0.78 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF256-201 - 627 7.5e-13 47.8 72.5 10 15 0.0071 7.4 6.3 0.7 3 13 463 473 461 481 0.85 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF256-201 - 627 7.5e-13 47.8 72.5 11 15 0.0022 2.3 7.9 0.2 3 21 491 510 489 510 0.91 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF256-201 - 627 7.5e-13 47.8 72.5 12 15 0.01 11 5.8 0.1 3 15 519 531 517 538 0.83 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF256-201 - 627 7.5e-13 47.8 72.5 13 15 0.049 52 3.6 0.2 3 15 547 559 545 566 0.82 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF256-201 - 627 7.5e-13 47.8 72.5 14 15 0.00033 0.35 10.5 0.2 3 21 575 594 573 594 0.86 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF256-201 - 627 7.5e-13 47.8 72.5 15 15 0.011 11 5.7 0.1 3 15 603 615 601 622 0.76 Ubiquitin-Binding Zinc Finger zf-C2H2_jaz PF12171.8 27 ZNF256-201 - 627 3.2e-12 46.4 69.2 1 14 0.0054 5.7 7.3 0.2 2 22 239 259 238 259 0.89 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF256-201 - 627 3.2e-12 46.4 69.2 2 14 0.15 1.5e+02 2.8 0.0 2 21 267 286 266 287 0.90 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF256-201 - 627 3.2e-12 46.4 69.2 3 14 0.064 67 3.9 0.2 4 21 297 314 294 315 0.89 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF256-201 - 627 3.2e-12 46.4 69.2 4 14 0.00032 0.34 11.3 0.1 2 22 323 343 322 343 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF256-201 - 627 3.2e-12 46.4 69.2 5 14 0.00018 0.19 12.1 0.1 2 22 351 371 350 371 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF256-201 - 627 3.2e-12 46.4 69.2 6 14 0.23 2.4e+02 2.2 0.7 2 12 379 389 378 398 0.90 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF256-201 - 627 3.2e-12 46.4 69.2 7 14 1.2 1.3e+03 -0.1 0.1 2 11 407 416 406 417 0.86 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF256-201 - 627 3.2e-12 46.4 69.2 8 14 0.057 60 4.1 0.5 2 22 435 455 434 455 0.89 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF256-201 - 627 3.2e-12 46.4 69.2 9 14 0.27 2.9e+02 1.9 1.0 2 12 463 473 462 483 0.77 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF256-201 - 627 3.2e-12 46.4 69.2 10 14 0.00072 0.76 10.1 0.0 2 22 491 511 490 511 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF256-201 - 627 3.2e-12 46.4 69.2 11 14 0.001 1.1 9.7 0.4 2 24 519 541 518 541 0.95 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF256-201 - 627 3.2e-12 46.4 69.2 12 14 0.00032 0.34 11.2 0.4 2 21 547 566 546 567 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF256-201 - 627 3.2e-12 46.4 69.2 13 14 0.00041 0.43 10.9 0.1 2 22 575 595 574 595 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF256-201 - 627 3.2e-12 46.4 69.2 14 14 0.39 4.1e+02 1.4 0.6 2 22 603 623 602 623 0.87 Zinc-finger double-stranded RNA-binding DZR PF12773.7 49 ZNF256-201 - 627 6.3e-08 32.5 61.0 1 3 0.62 6.6e+02 0.4 0.1 9 25 86 102 82 131 0.71 Double zinc ribbon DZR PF12773.7 49 ZNF256-201 - 627 6.3e-08 32.5 61.0 2 3 0.00046 0.49 10.5 6.9 1 35 241 301 214 310 0.62 Double zinc ribbon DZR PF12773.7 49 ZNF256-201 - 627 6.3e-08 32.5 61.0 3 3 0.0008 0.84 9.7 4.3 1 37 549 611 544 618 0.80 Double zinc ribbon zinc_ribbon_15 PF17032.5 86 ZNF256-201 - 627 4.4e-07 30.5 54.1 1 12 0.4 4.3e+02 1.8 0.8 41 77 214 250 200 257 0.64 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF256-201 - 627 4.4e-07 30.5 54.1 2 12 0.0033 3.5 8.4 2.5 37 78 238 279 232 284 0.90 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF256-201 - 627 4.4e-07 30.5 54.1 3 12 0.00038 0.4 11.5 0.6 30 79 259 308 256 313 0.88 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF256-201 - 627 4.4e-07 30.5 54.1 4 12 0.0036 3.8 8.3 0.5 38 78 295 335 282 338 0.85 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF256-201 - 627 4.4e-07 30.5 54.1 5 12 0.00056 0.59 10.9 0.7 32 76 317 361 310 369 0.85 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF256-201 - 627 4.4e-07 30.5 54.1 6 12 0.0054 5.7 7.8 1.6 34 78 347 391 337 396 0.84 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF256-201 - 627 4.4e-07 30.5 54.1 7 12 0.0035 3.7 8.4 3.9 37 79 406 448 365 451 0.76 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF256-201 - 627 4.4e-07 30.5 54.1 8 12 0.062 65 4.4 5.6 40 79 409 448 409 477 0.66 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF256-201 - 627 4.4e-07 30.5 54.1 9 12 0.015 16 6.3 1.0 35 78 460 503 450 506 0.79 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF256-201 - 627 4.4e-07 30.5 54.1 10 12 0.00036 0.38 11.5 4.5 20 78 473 531 463 535 0.87 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF256-201 - 627 4.4e-07 30.5 54.1 11 12 0.00084 0.89 10.3 0.9 32 77 513 558 506 562 0.85 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF256-201 - 627 4.4e-07 30.5 54.1 12 12 0.00069 0.73 10.6 1.2 31 78 568 615 559 618 0.83 zinc-ribbon family Zn-ribbon_8 PF09723.10 40 ZNF256-201 - 627 4.7e-07 29.8 84.1 1 14 1.8 1.9e+03 -1.0 0.2 25 34 87 97 81 102 0.66 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF256-201 - 627 4.7e-07 29.8 84.1 2 14 0.0012 1.2 9.3 4.6 6 37 239 277 238 279 0.73 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF256-201 - 627 4.7e-07 29.8 84.1 3 14 0.0066 7 6.9 2.5 6 38 267 306 266 308 0.78 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF256-201 - 627 4.7e-07 29.8 84.1 4 14 0.0029 3.1 8.0 3.6 7 34 296 330 295 333 0.88 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF256-201 - 627 4.7e-07 29.8 84.1 5 14 0.0008 0.84 9.8 5.1 6 34 323 358 322 360 0.88 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF256-201 - 627 4.7e-07 29.8 84.1 6 14 0.00089 0.94 9.7 3.4 6 34 351 386 350 390 0.89 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF256-201 - 627 4.7e-07 29.8 84.1 7 14 0.033 35 4.6 0.6 6 17 379 390 378 398 0.84 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF256-201 - 627 4.7e-07 29.8 84.1 8 14 0.00014 0.15 12.2 2.5 6 38 407 446 406 449 0.81 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF256-201 - 627 4.7e-07 29.8 84.1 9 14 0.0088 9.3 6.5 0.5 6 16 463 473 462 485 0.89 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF256-201 - 627 4.7e-07 29.8 84.1 10 14 0.00051 0.54 10.4 5.6 6 34 491 526 490 530 0.91 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF256-201 - 627 4.7e-07 29.8 84.1 11 14 0.017 18 5.6 5.0 6 32 519 552 518 555 0.79 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF256-201 - 627 4.7e-07 29.8 84.1 12 14 0.029 31 4.8 5.2 6 34 547 582 546 585 0.82 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF256-201 - 627 4.7e-07 29.8 84.1 13 14 0.0011 1.1 9.4 5.7 6 34 575 610 574 613 0.91 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF256-201 - 627 4.7e-07 29.8 84.1 14 14 0.03 32 4.8 0.7 6 16 603 613 602 619 0.84 Zinc ribbon domain # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF256-201.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF256-201.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF256-201.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF256-201.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF256-201.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:02:34 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF256-202.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF256-202.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF256-202.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF256-202.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF256-202.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:02:35 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZNF257-201 - 531 1.7e-91 296.9 131.5 1 16 5.7 4.9e+03 -1.7 0.2 16 21 90 95 88 99 0.82 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF257-201 - 531 1.7e-91 296.9 131.5 2 16 1.2 1e+03 0.4 0.2 10 24 108 122 107 124 0.76 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF257-201 - 531 1.7e-91 296.9 131.5 3 16 0.00063 0.54 10.8 5.5 3 24 129 150 127 150 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF257-201 - 531 1.7e-91 296.9 131.5 4 16 1.9e-08 1.7e-05 25.1 1.0 2 25 156 179 155 180 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF257-201 - 531 1.7e-91 296.9 131.5 5 16 7.7e-12 6.6e-09 35.8 1.3 1 25 183 207 183 208 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF257-201 - 531 1.7e-91 296.9 131.5 6 16 4.6e-09 4e-06 27.0 2.6 1 25 211 235 211 236 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF257-201 - 531 1.7e-91 296.9 131.5 7 16 2.1e-05 0.018 15.5 4.7 3 25 241 263 239 263 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF257-201 - 531 1.7e-91 296.9 131.5 8 16 6.2e-12 5.3e-09 36.1 0.9 2 25 271 294 270 295 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF257-201 - 531 1.7e-91 296.9 131.5 9 16 7.7e-12 6.6e-09 35.8 0.4 1 25 298 322 298 323 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF257-201 - 531 1.7e-91 296.9 131.5 10 16 2.5e-10 2.2e-07 31.0 2.8 1 25 326 350 326 351 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF257-201 - 531 1.7e-91 296.9 131.5 11 16 2.6e-06 0.0022 18.3 4.3 1 24 354 377 354 378 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF257-201 - 531 1.7e-91 296.9 131.5 12 16 4e-11 3.4e-08 33.5 0.6 2 25 386 409 385 410 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF257-201 - 531 1.7e-91 296.9 131.5 13 16 1.6e-11 1.3e-08 34.8 0.4 2 25 414 437 413 438 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF257-201 - 531 1.7e-91 296.9 131.5 14 16 2.9e-11 2.4e-08 34.0 1.5 1 25 441 465 441 466 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF257-201 - 531 1.7e-91 296.9 131.5 15 16 1.4e-09 1.2e-06 28.6 2.0 1 24 469 492 469 494 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF257-201 - 531 1.7e-91 296.9 131.5 16 16 0.0015 1.3 9.6 0.9 2 26 498 522 497 522 0.89 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZNF257-201 - 531 8.5e-63 205.5 122.4 1 15 7.9 6.7e+03 -2.1 0.3 6 23 115 135 113 135 0.65 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF257-201 - 531 8.5e-63 205.5 122.4 2 15 1.8e-06 0.0016 18.8 6.6 2 23 142 163 141 163 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF257-201 - 531 8.5e-63 205.5 122.4 3 15 2.6e-08 2.3e-05 24.6 1.7 1 23 169 191 169 191 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF257-201 - 531 8.5e-63 205.5 122.4 4 15 2.2e-08 1.9e-05 24.8 1.4 1 23 197 219 197 219 0.95 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF257-201 - 531 8.5e-63 205.5 122.4 5 15 4.6e-08 3.9e-05 23.9 2.0 1 23 225 247 225 247 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF257-201 - 531 8.5e-63 205.5 122.4 6 15 2.5 2.1e+03 -0.5 0.3 14 23 269 278 266 278 0.86 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF257-201 - 531 8.5e-63 205.5 122.4 7 15 9.9e-09 8.5e-06 26.0 0.4 1 23 284 306 284 306 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF257-201 - 531 8.5e-63 205.5 122.4 8 15 1.6e-08 1.3e-05 25.3 1.1 1 23 312 334 312 334 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF257-201 - 531 8.5e-63 205.5 122.4 9 15 1.4e-09 1.2e-06 28.6 2.8 1 23 340 362 340 362 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF257-201 - 531 8.5e-63 205.5 122.4 10 15 1 8.9e+02 0.7 0.2 1 7 368 375 368 393 0.61 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF257-201 - 531 8.5e-63 205.5 122.4 11 15 1.5e-08 1.2e-05 25.4 0.4 1 23 399 421 399 421 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF257-201 - 531 8.5e-63 205.5 122.4 12 15 2e-08 1.7e-05 25.0 1.1 1 23 427 449 427 449 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF257-201 - 531 8.5e-63 205.5 122.4 13 15 3e-08 2.5e-05 24.5 1.3 1 23 455 477 455 477 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF257-201 - 531 8.5e-63 205.5 122.4 14 15 1.3e-08 1.1e-05 25.6 1.2 1 23 483 505 483 505 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF257-201 - 531 8.5e-63 205.5 122.4 15 15 0.00049 0.42 11.2 0.6 5 19 515 529 513 531 0.94 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZNF257-201 - 531 2.5e-30 102.5 108.6 1 14 1.7 1.4e+03 0.6 0.3 2 13 90 101 90 106 0.78 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF257-201 - 531 2.5e-30 102.5 108.6 2 14 0.00028 0.24 12.3 5.1 2 23 142 163 141 164 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF257-201 - 531 2.5e-30 102.5 108.6 3 14 1.6e-05 0.013 16.2 1.4 1 23 169 191 169 192 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF257-201 - 531 2.5e-30 102.5 108.6 4 14 3.6e-05 0.031 15.1 1.3 1 23 197 219 197 220 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF257-201 - 531 2.5e-30 102.5 108.6 5 14 5.8e-05 0.05 14.5 1.3 1 23 225 247 225 248 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF257-201 - 531 2.5e-30 102.5 108.6 6 14 1.6 1.4e+03 0.6 0.3 6 23 258 278 256 279 0.70 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF257-201 - 531 2.5e-30 102.5 108.6 7 14 1.3e-05 0.011 16.5 0.4 1 23 284 306 284 307 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF257-201 - 531 2.5e-30 102.5 108.6 8 14 2.4e-05 0.02 15.7 1.0 1 23 312 334 312 335 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF257-201 - 531 2.5e-30 102.5 108.6 9 14 1.2e-05 0.01 16.6 2.1 1 23 340 362 340 363 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF257-201 - 531 2.5e-30 102.5 108.6 10 14 2.8 2.4e+03 -0.1 0.3 1 23 368 393 368 394 0.60 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF257-201 - 531 2.5e-30 102.5 108.6 11 14 1.6e-05 0.014 16.2 0.3 1 23 399 421 399 422 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF257-201 - 531 2.5e-30 102.5 108.6 12 14 3.3e-05 0.028 15.2 1.0 1 23 427 449 427 450 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF257-201 - 531 2.5e-30 102.5 108.6 13 14 1e-05 0.0089 16.8 1.2 1 23 455 477 455 478 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF257-201 - 531 2.5e-30 102.5 108.6 14 14 2.8e-05 0.024 15.5 0.6 1 23 483 505 483 506 0.93 C2H2-type zinc finger XPA_N PF01286.18 32 ZNF257-201 - 531 1.3e-15 57.1 72.1 1 12 0.058 49 4.1 3.3 3 12 142 151 141 159 0.83 XPA protein N-terminal XPA_N PF01286.18 32 ZNF257-201 - 531 1.3e-15 57.1 72.1 2 12 0.00054 0.46 10.6 0.3 3 14 170 181 168 186 0.90 XPA protein N-terminal XPA_N PF01286.18 32 ZNF257-201 - 531 1.3e-15 57.1 72.1 3 12 0.00086 0.74 9.9 0.1 3 14 198 209 196 216 0.86 XPA protein N-terminal XPA_N PF01286.18 32 ZNF257-201 - 531 1.3e-15 57.1 72.1 4 12 0.0012 1 9.4 0.1 3 14 226 237 224 241 0.90 XPA protein N-terminal XPA_N PF01286.18 32 ZNF257-201 - 531 1.3e-15 57.1 72.1 5 12 8 6.8e+03 -2.8 0.6 5 13 256 264 256 266 0.80 XPA protein N-terminal XPA_N PF01286.18 32 ZNF257-201 - 531 1.3e-15 57.1 72.1 6 12 0.00058 0.49 10.5 0.1 3 14 285 296 283 301 0.90 XPA protein N-terminal XPA_N PF01286.18 32 ZNF257-201 - 531 1.3e-15 57.1 72.1 7 12 0.0023 2 8.5 0.3 3 14 313 324 312 330 0.86 XPA protein N-terminal XPA_N PF01286.18 32 ZNF257-201 - 531 1.3e-15 57.1 72.1 8 12 0.00083 0.7 10.0 0.1 3 14 341 352 339 358 0.85 XPA protein N-terminal XPA_N PF01286.18 32 ZNF257-201 - 531 1.3e-15 57.1 72.1 9 12 0.00021 0.18 11.9 0.1 3 17 400 414 398 417 0.80 XPA protein N-terminal XPA_N PF01286.18 32 ZNF257-201 - 531 1.3e-15 57.1 72.1 10 12 0.00045 0.38 10.8 0.2 3 14 428 439 426 445 0.86 XPA protein N-terminal XPA_N PF01286.18 32 ZNF257-201 - 531 1.3e-15 57.1 72.1 11 12 0.00097 0.83 9.8 0.2 3 14 456 467 454 473 0.86 XPA protein N-terminal XPA_N PF01286.18 32 ZNF257-201 - 531 1.3e-15 57.1 72.1 12 12 0.0009 0.77 9.9 0.1 3 13 484 494 482 501 0.79 XPA protein N-terminal zf-C2H2_6 PF13912.6 27 ZNF257-201 - 531 8.3e-13 48.0 99.9 1 13 0.73 6.2e+02 0.6 0.4 3 8 90 95 90 99 0.88 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF257-201 - 531 8.3e-13 48.0 99.9 2 13 8.5e-05 0.073 13.1 2.4 3 24 142 163 142 166 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF257-201 - 531 8.3e-13 48.0 99.9 3 13 5.5e-05 0.047 13.7 2.3 2 24 169 191 168 194 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF257-201 - 531 8.3e-13 48.0 99.9 4 13 0.0019 1.6 8.8 1.3 2 21 197 216 197 222 0.86 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF257-201 - 531 8.3e-13 48.0 99.9 5 13 0.0044 3.7 7.6 1.0 2 13 225 236 225 250 0.80 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF257-201 - 531 8.3e-13 48.0 99.9 6 13 0.00034 0.29 11.2 0.7 2 21 284 303 284 307 0.92 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF257-201 - 531 8.3e-13 48.0 99.9 7 13 0.0025 2.2 8.4 1.8 2 24 312 334 312 337 0.88 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF257-201 - 531 8.3e-13 48.0 99.9 8 13 0.00022 0.19 11.8 2.9 2 24 340 362 340 365 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF257-201 - 531 8.3e-13 48.0 99.9 9 13 7.5 6.4e+03 -2.7 0.6 1 6 367 372 367 376 0.77 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF257-201 - 531 8.3e-13 48.0 99.9 10 13 0.0013 1.1 9.3 0.4 2 22 399 419 399 423 0.82 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF257-201 - 531 8.3e-13 48.0 99.9 11 13 0.0041 3.5 7.7 1.5 2 22 427 447 427 451 0.82 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF257-201 - 531 8.3e-13 48.0 99.9 12 13 0.0042 3.6 7.7 1.5 2 21 455 474 455 478 0.78 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF257-201 - 531 8.3e-13 48.0 99.9 13 13 0.00075 0.64 10.1 0.4 2 24 483 505 483 508 0.92 C2H2-type zinc finger zf-C2H2_11 PF16622.5 29 ZNF257-201 - 531 9.1e-11 41.3 58.7 1 11 0.00092 0.79 9.5 4.8 3 26 139 162 137 163 0.92 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF257-201 - 531 9.1e-11 41.3 58.7 2 11 3.7e-05 0.032 14.0 0.8 2 23 166 187 165 191 0.91 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF257-201 - 531 9.1e-11 41.3 58.7 3 11 0.043 37 4.2 0.1 5 25 197 217 194 219 0.81 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF257-201 - 531 9.1e-11 41.3 58.7 4 11 0.13 1.1e+02 2.7 0.1 5 14 225 234 222 246 0.77 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF257-201 - 531 9.1e-11 41.3 58.7 5 11 0.00043 0.37 10.6 0.0 5 26 284 305 281 306 0.91 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF257-201 - 531 9.1e-11 41.3 58.7 6 11 0.0055 4.7 7.1 0.2 5 26 312 333 309 336 0.86 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF257-201 - 531 9.1e-11 41.3 58.7 7 11 0.0061 5.2 6.9 0.1 5 26 340 361 337 362 0.92 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF257-201 - 531 9.1e-11 41.3 58.7 8 11 0.0064 5.5 6.9 0.1 5 26 399 420 396 421 0.90 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF257-201 - 531 9.1e-11 41.3 58.7 9 11 0.022 19 5.1 0.1 5 26 427 448 424 449 0.85 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF257-201 - 531 9.1e-11 41.3 58.7 10 11 0.0056 4.7 7.0 0.2 5 26 455 476 452 477 0.89 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF257-201 - 531 9.1e-11 41.3 58.7 11 11 0.36 3.1e+02 1.3 0.1 5 13 483 491 480 502 0.87 zinc-finger C2H2-type zf-C2H2_jaz PF12171.8 27 ZNF257-201 - 531 9.9e-11 41.6 79.7 1 13 8.1 6.9e+03 -2.5 0.2 7 12 115 120 114 120 0.85 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF257-201 - 531 9.9e-11 41.6 79.7 2 13 0.3 2.6e+02 2.1 1.1 4 21 143 160 142 161 0.80 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF257-201 - 531 9.9e-11 41.6 79.7 3 13 0.0024 2 8.8 0.9 2 21 169 188 163 191 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF257-201 - 531 9.9e-11 41.6 79.7 4 13 0.0003 0.25 11.7 0.3 2 21 197 216 196 217 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF257-201 - 531 9.9e-11 41.6 79.7 5 13 0.0013 1.1 9.6 0.4 2 22 225 245 224 245 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF257-201 - 531 9.9e-11 41.6 79.7 6 13 0.0012 1.1 9.7 0.1 2 20 284 302 283 303 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF257-201 - 531 9.9e-11 41.6 79.7 7 13 0.0011 0.9 9.9 0.3 2 21 312 331 311 332 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF257-201 - 531 9.9e-11 41.6 79.7 8 13 0.00025 0.21 11.9 0.3 2 22 340 360 339 360 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF257-201 - 531 9.9e-11 41.6 79.7 9 13 0.0019 1.6 9.1 0.1 2 21 399 418 398 419 0.91 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF257-201 - 531 9.9e-11 41.6 79.7 10 13 0.0029 2.5 8.5 0.6 2 21 427 446 426 447 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF257-201 - 531 9.9e-11 41.6 79.7 11 13 0.00063 0.53 10.6 0.4 2 21 455 474 454 475 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF257-201 - 531 9.9e-11 41.6 79.7 12 13 0.049 42 4.6 0.2 2 13 483 494 482 503 0.78 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF257-201 - 531 9.9e-11 41.6 79.7 13 13 1.4 1.2e+03 -0.1 0.8 6 20 515 529 514 531 0.90 Zinc-finger double-stranded RNA-binding zf_UBZ PF18439.1 32 ZNF257-201 - 531 9.6e-10 37.9 63.0 1 12 8.9 7.6e+03 -3.4 0.1 24 29 48 53 48 53 0.94 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF257-201 - 531 9.6e-10 37.9 63.0 2 12 0.16 1.4e+02 2.2 2.6 3 14 141 152 139 160 0.74 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF257-201 - 531 9.6e-10 37.9 63.0 3 12 0.0034 2.9 7.6 0.3 2 18 168 185 167 188 0.78 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF257-201 - 531 9.6e-10 37.9 63.0 4 12 0.0025 2.2 8.0 0.4 3 20 197 215 195 216 0.80 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF257-201 - 531 9.6e-10 37.9 63.0 5 12 0.0039 3.4 7.4 0.4 3 16 225 239 223 244 0.77 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF257-201 - 531 9.6e-10 37.9 63.0 6 12 0.0018 1.5 8.5 0.1 3 18 284 300 282 303 0.80 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF257-201 - 531 9.6e-10 37.9 63.0 7 12 0.0037 3.2 7.4 0.4 3 20 312 330 310 331 0.80 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF257-201 - 531 9.6e-10 37.9 63.0 8 12 0.0043 3.6 7.2 0.2 3 15 340 352 338 359 0.79 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF257-201 - 531 9.6e-10 37.9 63.0 9 12 0.0062 5.3 6.7 0.1 3 13 399 409 397 414 0.84 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF257-201 - 531 9.6e-10 37.9 63.0 10 12 0.0015 1.3 8.7 0.5 3 20 427 445 425 446 0.84 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF257-201 - 531 9.6e-10 37.9 63.0 11 12 0.0033 2.8 7.6 0.3 3 16 455 469 453 474 0.77 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF257-201 - 531 9.6e-10 37.9 63.0 12 12 0.0046 3.9 7.1 0.2 3 12 483 492 481 498 0.86 Ubiquitin-Binding Zinc Finger Zn-ribbon_8 PF09723.10 40 ZNF257-201 - 531 4.5e-08 33.1 89.0 1 13 2.7 2.3e+03 -1.2 1.2 11 34 74 96 72 98 0.57 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF257-201 - 531 4.5e-08 33.1 89.0 2 13 0.36 3.1e+02 1.6 4.4 19 34 131 148 113 151 0.62 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF257-201 - 531 4.5e-08 33.1 89.0 3 13 0.18 1.5e+02 2.6 9.2 7 35 142 177 140 180 0.76 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF257-201 - 531 4.5e-08 33.1 89.0 4 13 0.00021 0.18 11.9 5.6 7 38 170 208 168 210 0.91 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF257-201 - 531 4.5e-08 33.1 89.0 5 13 8.5e-05 0.073 13.2 5.8 6 38 197 236 196 237 0.78 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF257-201 - 531 4.5e-08 33.1 89.0 6 13 0.0013 1.1 9.4 0.6 6 21 225 240 224 250 0.82 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF257-201 - 531 4.5e-08 33.1 89.0 7 13 3.8e-05 0.032 14.3 5.0 6 38 284 323 283 325 0.88 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF257-201 - 531 4.5e-08 33.1 89.0 8 13 0.0004 0.35 11.0 6.2 6 38 312 351 311 352 0.82 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF257-201 - 531 4.5e-08 33.1 89.0 9 13 0.016 14 5.9 4.2 6 17 340 357 339 378 0.73 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF257-201 - 531 4.5e-08 33.1 89.0 10 13 8e-05 0.068 13.3 5.9 6 35 399 435 398 438 0.90 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF257-201 - 531 4.5e-08 33.1 89.0 11 13 0.00013 0.11 12.6 6.4 6 38 427 466 425 467 0.83 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF257-201 - 531 4.5e-08 33.1 89.0 12 13 9.1e-05 0.078 13.1 6.0 6 38 455 494 454 494 0.79 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF257-201 - 531 4.5e-08 33.1 89.0 13 13 0.0022 1.9 8.7 2.5 6 19 483 496 482 520 0.76 Zinc ribbon domain MRP-S23 PF10484.9 128 ZNF257-201 - 531 5.6e-08 33.1 0.1 1 10 0.86 7.3e+02 0.4 0.3 62 96 112 145 102 183 0.61 Mitochondrial ribosomal protein S23 MRP-S23 PF10484.9 128 ZNF257-201 - 531 5.6e-08 33.1 0.1 2 10 4.1 3.5e+03 -1.8 0.0 5 31 171 197 167 200 0.86 Mitochondrial ribosomal protein S23 MRP-S23 PF10484.9 128 ZNF257-201 - 531 5.6e-08 33.1 0.1 3 10 0.055 47 4.3 0.0 5 31 199 225 196 228 0.91 Mitochondrial ribosomal protein S23 MRP-S23 PF10484.9 128 ZNF257-201 - 531 5.6e-08 33.1 0.1 4 10 0.024 21 5.4 0.0 5 34 227 256 225 263 0.92 Mitochondrial ribosomal protein S23 MRP-S23 PF10484.9 128 ZNF257-201 - 531 5.6e-08 33.1 0.1 5 10 1.1 9.1e+02 0.1 0.0 6 31 287 312 285 315 0.90 Mitochondrial ribosomal protein S23 MRP-S23 PF10484.9 128 ZNF257-201 - 531 5.6e-08 33.1 0.1 6 10 0.11 97 3.2 0.0 6 31 315 340 312 343 0.91 Mitochondrial ribosomal protein S23 MRP-S23 PF10484.9 128 ZNF257-201 - 531 5.6e-08 33.1 0.1 7 10 0.99 8.4e+02 0.2 0.0 5 36 342 373 340 377 0.84 Mitochondrial ribosomal protein S23 MRP-S23 PF10484.9 128 ZNF257-201 - 531 5.6e-08 33.1 0.1 8 10 0.04 34 4.7 0.0 5 31 401 427 399 436 0.91 Mitochondrial ribosomal protein S23 MRP-S23 PF10484.9 128 ZNF257-201 - 531 5.6e-08 33.1 0.1 9 10 2.8 2.4e+03 -1.3 0.0 5 31 429 455 427 458 0.88 Mitochondrial ribosomal protein S23 MRP-S23 PF10484.9 128 ZNF257-201 - 531 5.6e-08 33.1 0.1 10 10 0.59 5.1e+02 0.9 0.0 5 31 457 483 454 486 0.91 Mitochondrial ribosomal protein S23 # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF257-201.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF257-201.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF257-201.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF257-201.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF257-201.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:02:35 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF257-202.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF257-202.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF257-202.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF257-202.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF257-202.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:02:36 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZNF257-203 - 563 4.7e-91 295.5 131.5 1 16 5.8 5.2e+03 -1.8 0.2 16 21 122 127 120 131 0.82 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF257-203 - 563 4.7e-91 295.5 131.5 2 16 1.2 1.1e+03 0.3 0.2 10 24 140 154 139 156 0.76 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF257-203 - 563 4.7e-91 295.5 131.5 3 16 0.00065 0.58 10.7 5.5 3 24 161 182 159 182 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF257-203 - 563 4.7e-91 295.5 131.5 4 16 2e-08 1.8e-05 25.0 1.0 2 25 188 211 187 212 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF257-203 - 563 4.7e-91 295.5 131.5 5 16 7.9e-12 7.1e-09 35.7 1.3 1 25 215 239 215 240 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF257-203 - 563 4.7e-91 295.5 131.5 6 16 4.7e-09 4.2e-06 26.9 2.6 1 25 243 267 243 268 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF257-203 - 563 4.7e-91 295.5 131.5 7 16 2.1e-05 0.019 15.4 4.7 3 25 273 295 271 295 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF257-203 - 563 4.7e-91 295.5 131.5 8 16 6.4e-12 5.7e-09 36.0 0.9 2 25 303 326 302 327 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF257-203 - 563 4.7e-91 295.5 131.5 9 16 7.9e-12 7e-09 35.7 0.4 1 25 330 354 330 355 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF257-203 - 563 4.7e-91 295.5 131.5 10 16 2.6e-10 2.3e-07 30.9 2.8 1 25 358 382 358 383 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF257-203 - 563 4.7e-91 295.5 131.5 11 16 2.7e-06 0.0024 18.2 4.3 1 24 386 409 386 410 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF257-203 - 563 4.7e-91 295.5 131.5 12 16 4.1e-11 3.7e-08 33.4 0.6 2 25 418 441 417 442 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF257-203 - 563 4.7e-91 295.5 131.5 13 16 1.6e-11 1.4e-08 34.7 0.4 2 25 446 469 445 470 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF257-203 - 563 4.7e-91 295.5 131.5 14 16 2.9e-11 2.6e-08 33.9 1.5 1 25 473 497 473 498 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF257-203 - 563 4.7e-91 295.5 131.5 15 16 1.5e-09 1.3e-06 28.5 2.0 1 24 501 524 501 526 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF257-203 - 563 4.7e-91 295.5 131.5 16 16 0.0016 1.4 9.5 0.9 2 26 530 554 529 554 0.89 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZNF257-203 - 563 2.3e-62 204.1 122.4 1 15 8 7.2e+03 -2.2 0.3 6 23 147 167 145 167 0.65 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF257-203 - 563 2.3e-62 204.1 122.4 2 15 1.9e-06 0.0017 18.7 6.6 2 23 174 195 173 195 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF257-203 - 563 2.3e-62 204.1 122.4 3 15 2.7e-08 2.4e-05 24.5 1.7 1 23 201 223 201 223 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF257-203 - 563 2.3e-62 204.1 122.4 4 15 2.3e-08 2.1e-05 24.7 1.4 1 23 229 251 229 251 0.95 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF257-203 - 563 2.3e-62 204.1 122.4 5 15 4.7e-08 4.2e-05 23.8 2.0 1 23 257 279 257 279 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF257-203 - 563 2.3e-62 204.1 122.4 6 15 2.5 2.2e+03 -0.6 0.3 14 23 301 310 298 310 0.86 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF257-203 - 563 2.3e-62 204.1 122.4 7 15 1e-08 9.1e-06 25.9 0.4 1 23 316 338 316 338 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF257-203 - 563 2.3e-62 204.1 122.4 8 15 1.6e-08 1.4e-05 25.2 1.1 1 23 344 366 344 366 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF257-203 - 563 2.3e-62 204.1 122.4 9 15 1.4e-09 1.3e-06 28.6 2.8 1 23 372 394 372 394 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF257-203 - 563 2.3e-62 204.1 122.4 10 15 1.1 9.5e+02 0.6 0.2 1 7 400 407 400 425 0.61 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF257-203 - 563 2.3e-62 204.1 122.4 11 15 1.5e-08 1.3e-05 25.3 0.4 1 23 431 453 431 453 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF257-203 - 563 2.3e-62 204.1 122.4 12 15 2e-08 1.8e-05 24.9 1.1 1 23 459 481 459 481 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF257-203 - 563 2.3e-62 204.1 122.4 13 15 3e-08 2.7e-05 24.4 1.3 1 23 487 509 487 509 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF257-203 - 563 2.3e-62 204.1 122.4 14 15 1.3e-08 1.2e-05 25.5 1.2 1 23 515 537 515 537 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF257-203 - 563 2.3e-62 204.1 122.4 15 15 0.0005 0.45 11.1 0.6 5 19 547 561 545 563 0.94 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZNF257-203 - 563 6.5e-30 101.2 108.6 1 14 1.7 1.5e+03 0.5 0.3 2 13 122 133 122 138 0.78 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF257-203 - 563 6.5e-30 101.2 108.6 2 14 0.00029 0.26 12.2 5.1 2 23 174 195 173 196 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF257-203 - 563 6.5e-30 101.2 108.6 3 14 1.6e-05 0.014 16.2 1.4 1 23 201 223 201 224 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF257-203 - 563 6.5e-30 101.2 108.6 4 14 3.7e-05 0.033 15.0 1.3 1 23 229 251 229 252 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF257-203 - 563 6.5e-30 101.2 108.6 5 14 6e-05 0.054 14.4 1.3 1 23 257 279 257 280 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF257-203 - 563 6.5e-30 101.2 108.6 6 14 1.7 1.5e+03 0.5 0.3 6 23 290 310 288 311 0.70 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF257-203 - 563 6.5e-30 101.2 108.6 7 14 1.3e-05 0.011 16.4 0.4 1 23 316 338 316 339 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF257-203 - 563 6.5e-30 101.2 108.6 8 14 2.5e-05 0.022 15.6 1.0 1 23 344 366 344 367 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF257-203 - 563 6.5e-30 101.2 108.6 9 14 1.2e-05 0.011 16.5 2.1 1 23 372 394 372 395 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF257-203 - 563 6.5e-30 101.2 108.6 10 14 2.9 2.6e+03 -0.2 0.3 1 23 400 425 400 426 0.60 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF257-203 - 563 6.5e-30 101.2 108.6 11 14 1.6e-05 0.015 16.1 0.3 1 23 431 453 431 454 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF257-203 - 563 6.5e-30 101.2 108.6 12 14 3.3e-05 0.03 15.2 1.0 1 23 459 481 459 482 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF257-203 - 563 6.5e-30 101.2 108.6 13 14 1.1e-05 0.0096 16.7 1.2 1 23 487 509 487 510 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF257-203 - 563 6.5e-30 101.2 108.6 14 14 2.8e-05 0.025 15.4 0.6 1 23 515 537 515 538 0.93 C2H2-type zinc finger KRAB PF01352.27 42 ZNF257-203 - 563 1.4e-22 79.0 0.2 1 1 2.8e-25 2.5e-22 78.2 0.2 1 42 3 44 3 44 0.98 KRAB box XPA_N PF01286.18 32 ZNF257-203 - 563 2.4e-15 56.3 71.9 1 12 0.059 52 4.0 3.3 3 12 174 183 173 191 0.83 XPA protein N-terminal XPA_N PF01286.18 32 ZNF257-203 - 563 2.4e-15 56.3 71.9 2 12 0.00055 0.49 10.5 0.3 3 14 202 213 200 218 0.90 XPA protein N-terminal XPA_N PF01286.18 32 ZNF257-203 - 563 2.4e-15 56.3 71.9 3 12 0.00088 0.79 9.8 0.1 3 14 230 241 228 248 0.86 XPA protein N-terminal XPA_N PF01286.18 32 ZNF257-203 - 563 2.4e-15 56.3 71.9 4 12 0.0012 1.1 9.3 0.1 3 14 258 269 256 273 0.90 XPA protein N-terminal XPA_N PF01286.18 32 ZNF257-203 - 563 2.4e-15 56.3 71.9 5 12 8.1 7.2e+03 -2.9 0.6 5 13 288 296 288 298 0.80 XPA protein N-terminal XPA_N PF01286.18 32 ZNF257-203 - 563 2.4e-15 56.3 71.9 6 12 0.00059 0.53 10.4 0.1 3 14 317 328 315 333 0.90 XPA protein N-terminal XPA_N PF01286.18 32 ZNF257-203 - 563 2.4e-15 56.3 71.9 7 12 0.0024 2.1 8.5 0.3 3 14 345 356 344 362 0.86 XPA protein N-terminal XPA_N PF01286.18 32 ZNF257-203 - 563 2.4e-15 56.3 71.9 8 12 0.00084 0.75 9.9 0.1 3 14 373 384 371 390 0.85 XPA protein N-terminal XPA_N PF01286.18 32 ZNF257-203 - 563 2.4e-15 56.3 71.9 9 12 0.00021 0.19 11.8 0.1 3 17 432 446 430 449 0.80 XPA protein N-terminal XPA_N PF01286.18 32 ZNF257-203 - 563 2.4e-15 56.3 71.9 10 12 0.00046 0.41 10.7 0.2 3 14 460 471 458 477 0.86 XPA protein N-terminal XPA_N PF01286.18 32 ZNF257-203 - 563 2.4e-15 56.3 71.9 11 12 0.00098 0.88 9.7 0.2 3 14 488 499 486 505 0.86 XPA protein N-terminal XPA_N PF01286.18 32 ZNF257-203 - 563 2.4e-15 56.3 71.9 12 12 0.00092 0.82 9.8 0.1 3 13 516 526 514 533 0.79 XPA protein N-terminal zf-C2H2_6 PF13912.6 27 ZNF257-203 - 563 2.8e-12 46.3 100.3 1 12 0.74 6.6e+02 0.5 0.4 3 8 122 127 122 131 0.88 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF257-203 - 563 2.8e-12 46.3 100.3 2 12 8.7e-05 0.078 13.0 2.4 3 24 174 195 174 198 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF257-203 - 563 2.8e-12 46.3 100.3 3 12 5.6e-05 0.05 13.6 2.3 2 24 201 223 200 226 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF257-203 - 563 2.8e-12 46.3 100.3 4 12 0.0019 1.7 8.7 1.3 2 21 229 248 229 254 0.86 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF257-203 - 563 2.8e-12 46.3 100.3 5 12 0.0045 4 7.5 1.0 2 13 257 268 257 282 0.80 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF257-203 - 563 2.8e-12 46.3 100.3 6 12 0.00035 0.31 11.1 0.7 2 21 316 335 316 339 0.92 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF257-203 - 563 2.8e-12 46.3 100.3 7 12 0.0026 2.3 8.3 1.8 2 24 344 366 344 369 0.88 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF257-203 - 563 2.8e-12 46.3 100.3 8 12 0.00022 0.2 11.7 2.9 2 24 372 394 372 397 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF257-203 - 563 2.8e-12 46.3 100.3 9 12 0.0013 1.2 9.2 0.4 2 22 431 451 431 455 0.82 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF257-203 - 563 2.8e-12 46.3 100.3 10 12 0.0042 3.7 7.6 1.5 2 22 459 479 459 483 0.82 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF257-203 - 563 2.8e-12 46.3 100.3 11 12 0.0043 3.8 7.6 1.5 2 21 487 506 487 510 0.78 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF257-203 - 563 2.8e-12 46.3 100.3 12 12 0.00077 0.69 10.0 0.4 2 24 515 537 515 540 0.92 C2H2-type zinc finger zf_UBZ PF18439.1 32 ZNF257-203 - 563 1.4e-10 40.6 59.2 1 11 0.16 1.5e+02 2.1 2.6 3 14 173 184 171 192 0.74 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF257-203 - 563 1.4e-10 40.6 59.2 2 11 0.0035 3.1 7.5 0.3 2 18 200 217 199 220 0.78 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF257-203 - 563 1.4e-10 40.6 59.2 3 11 0.0026 2.3 7.9 0.4 3 20 229 247 227 248 0.80 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF257-203 - 563 1.4e-10 40.6 59.2 4 11 0.004 3.6 7.3 0.4 3 16 257 271 255 276 0.77 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF257-203 - 563 1.4e-10 40.6 59.2 5 11 0.0018 1.6 8.4 0.1 3 18 316 332 314 335 0.80 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF257-203 - 563 1.4e-10 40.6 59.2 6 11 0.0038 3.4 7.3 0.4 3 20 344 362 342 363 0.80 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF257-203 - 563 1.4e-10 40.6 59.2 7 11 0.0043 3.9 7.2 0.2 3 15 372 384 370 391 0.79 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF257-203 - 563 1.4e-10 40.6 59.2 8 11 0.0063 5.6 6.6 0.1 3 13 431 441 429 446 0.84 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF257-203 - 563 1.4e-10 40.6 59.2 9 11 0.0016 1.4 8.6 0.5 3 20 459 477 457 478 0.84 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF257-203 - 563 1.4e-10 40.6 59.2 10 11 0.0034 3 7.5 0.3 3 16 487 501 485 506 0.77 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF257-203 - 563 1.4e-10 40.6 59.2 11 11 0.0047 4.2 7.1 0.2 3 12 515 524 513 530 0.86 Ubiquitin-Binding Zinc Finger zf-C2H2_11 PF16622.5 29 ZNF257-203 - 563 1.9e-10 40.3 58.7 1 11 0.00094 0.84 9.4 4.8 3 26 171 194 169 195 0.92 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF257-203 - 563 1.9e-10 40.3 58.7 2 11 3.8e-05 0.034 13.9 0.8 2 23 198 219 197 223 0.91 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF257-203 - 563 1.9e-10 40.3 58.7 3 11 0.044 39 4.1 0.1 5 25 229 249 226 251 0.81 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF257-203 - 563 1.9e-10 40.3 58.7 4 11 0.13 1.1e+02 2.6 0.1 5 14 257 266 254 278 0.77 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF257-203 - 563 1.9e-10 40.3 58.7 5 11 0.00044 0.39 10.5 0.0 5 26 316 337 313 338 0.91 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF257-203 - 563 1.9e-10 40.3 58.7 6 11 0.0056 5.1 7.0 0.2 5 26 344 365 341 368 0.86 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF257-203 - 563 1.9e-10 40.3 58.7 7 11 0.0062 5.5 6.8 0.1 5 26 372 393 369 394 0.92 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF257-203 - 563 1.9e-10 40.3 58.7 8 11 0.0065 5.8 6.8 0.1 5 26 431 452 428 453 0.90 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF257-203 - 563 1.9e-10 40.3 58.7 9 11 0.022 20 5.0 0.1 5 26 459 480 456 481 0.85 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF257-203 - 563 1.9e-10 40.3 58.7 10 11 0.0057 5.1 7.0 0.2 5 26 487 508 484 509 0.89 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF257-203 - 563 1.9e-10 40.3 58.7 11 11 0.37 3.3e+02 1.2 0.1 5 13 515 523 512 534 0.87 zinc-finger C2H2-type zf-C2H2_jaz PF12171.8 27 ZNF257-203 - 563 2.3e-10 40.4 79.7 1 13 8.2 7.4e+03 -2.6 0.2 7 12 147 152 146 152 0.85 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF257-203 - 563 2.3e-10 40.4 79.7 2 13 0.31 2.7e+02 2.0 1.1 4 21 175 192 174 193 0.80 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF257-203 - 563 2.3e-10 40.4 79.7 3 13 0.0024 2.2 8.7 0.9 2 21 201 220 195 223 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF257-203 - 563 2.3e-10 40.4 79.7 4 13 0.0003 0.27 11.6 0.3 2 21 229 248 228 249 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF257-203 - 563 2.3e-10 40.4 79.7 5 13 0.0013 1.2 9.5 0.4 2 22 257 277 256 277 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF257-203 - 563 2.3e-10 40.4 79.7 6 13 0.0013 1.1 9.6 0.1 2 20 316 334 315 335 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF257-203 - 563 2.3e-10 40.4 79.7 7 13 0.0011 0.96 9.8 0.3 2 21 344 363 343 364 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF257-203 - 563 2.3e-10 40.4 79.7 8 13 0.00025 0.23 11.8 0.3 2 22 372 392 371 392 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF257-203 - 563 2.3e-10 40.4 79.7 9 13 0.0019 1.7 9.0 0.1 2 21 431 450 430 451 0.91 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF257-203 - 563 2.3e-10 40.4 79.7 10 13 0.003 2.7 8.4 0.6 2 21 459 478 458 479 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF257-203 - 563 2.3e-10 40.4 79.7 11 13 0.00064 0.57 10.5 0.4 2 21 487 506 486 507 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF257-203 - 563 2.3e-10 40.4 79.7 12 13 0.05 44 4.5 0.2 2 13 515 526 514 535 0.78 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF257-203 - 563 2.3e-10 40.4 79.7 13 13 1.4 1.3e+03 -0.2 0.8 6 20 547 561 546 563 0.90 Zinc-finger double-stranded RNA-binding Zn-ribbon_8 PF09723.10 40 ZNF257-203 - 563 5.2e-08 32.9 88.2 1 12 2.8 2.5e+03 -1.3 1.2 11 34 106 128 104 130 0.57 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF257-203 - 563 5.2e-08 32.9 88.2 2 12 0.58 5.2e+02 0.9 11.0 7 35 174 209 145 212 0.84 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF257-203 - 563 5.2e-08 32.9 88.2 3 12 0.00023 0.21 11.7 5.7 7 38 202 240 200 242 0.91 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF257-203 - 563 5.2e-08 32.9 88.2 4 12 9.5e-05 0.085 13.0 5.9 6 38 229 268 228 269 0.78 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF257-203 - 563 5.2e-08 32.9 88.2 5 12 0.0014 1.2 9.3 0.6 6 21 257 272 256 279 0.81 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF257-203 - 563 5.2e-08 32.9 88.2 6 12 3.9e-05 0.035 14.2 5.0 6 38 316 355 315 357 0.88 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF257-203 - 563 5.2e-08 32.9 88.2 7 12 0.00059 0.53 10.4 6.8 6 38 344 383 341 385 0.83 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF257-203 - 563 5.2e-08 32.9 88.2 8 12 0.011 9.7 6.4 3.6 6 17 372 386 370 408 0.73 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF257-203 - 563 5.2e-08 32.9 88.2 9 12 6.8e-05 0.061 13.5 5.6 6 35 431 467 430 470 0.90 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF257-203 - 563 5.2e-08 32.9 88.2 10 12 0.00014 0.12 12.5 6.5 6 38 459 498 457 500 0.83 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF257-203 - 563 5.2e-08 32.9 88.2 11 12 8.5e-05 0.077 13.1 5.9 6 38 487 526 486 526 0.79 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF257-203 - 563 5.2e-08 32.9 88.2 12 12 0.0021 1.8 8.7 2.5 6 19 515 528 513 555 0.75 Zinc ribbon domain MRP-S23 PF10484.9 128 ZNF257-203 - 563 9.5e-08 32.4 0.1 1 10 0.9 8e+02 0.3 0.3 62 95 144 176 132 214 0.62 Mitochondrial ribosomal protein S23 MRP-S23 PF10484.9 128 ZNF257-203 - 563 9.5e-08 32.4 0.1 2 10 4.2 3.8e+03 -1.9 0.0 5 31 203 229 199 232 0.86 Mitochondrial ribosomal protein S23 MRP-S23 PF10484.9 128 ZNF257-203 - 563 9.5e-08 32.4 0.1 3 10 0.056 50 4.2 0.0 5 31 231 257 228 260 0.91 Mitochondrial ribosomal protein S23 MRP-S23 PF10484.9 128 ZNF257-203 - 563 9.5e-08 32.4 0.1 4 10 0.025 22 5.3 0.0 5 34 259 288 257 295 0.92 Mitochondrial ribosomal protein S23 MRP-S23 PF10484.9 128 ZNF257-203 - 563 9.5e-08 32.4 0.1 5 10 1.1 9.8e+02 -0.0 0.0 6 31 319 344 317 347 0.90 Mitochondrial ribosomal protein S23 MRP-S23 PF10484.9 128 ZNF257-203 - 563 9.5e-08 32.4 0.1 6 10 0.12 1.1e+02 3.1 0.0 6 31 347 372 345 375 0.91 Mitochondrial ribosomal protein S23 MRP-S23 PF10484.9 128 ZNF257-203 - 563 9.5e-08 32.4 0.1 7 10 0.97 8.7e+02 0.2 0.0 5 36 374 405 372 410 0.84 Mitochondrial ribosomal protein S23 MRP-S23 PF10484.9 128 ZNF257-203 - 563 9.5e-08 32.4 0.1 8 10 0.045 40 4.5 0.0 5 31 433 459 431 462 0.91 Mitochondrial ribosomal protein S23 MRP-S23 PF10484.9 128 ZNF257-203 - 563 9.5e-08 32.4 0.1 9 10 2.9 2.6e+03 -1.4 0.0 6 31 462 487 459 490 0.88 Mitochondrial ribosomal protein S23 MRP-S23 PF10484.9 128 ZNF257-203 - 563 9.5e-08 32.4 0.1 10 10 0.62 5.6e+02 0.8 0.0 5 31 489 515 487 518 0.90 Mitochondrial ribosomal protein S23 # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF257-203.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF257-203.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF257-203.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF257-203.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF257-203.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:02:36 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF257-204.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF257-204.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF257-204.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF257-204.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF257-204.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:02:36 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF257-205.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF257-205.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF257-205.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF257-205.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF257-205.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:02:37 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF257-206.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF257-206.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF257-206.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF257-206.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF257-206.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:02:37 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- KRAB PF01352.27 42 ZNF257-207 - 82 7.1e-24 83.2 0.2 1 1 1e-27 8.9e-24 82.9 0.2 1 42 3 44 3 44 0.98 KRAB box # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF257-207.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF257-207.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF257-207.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF257-207.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF257-207.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:02:37 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF260-201.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF260-201.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF260-201.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF260-201.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF260-201.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:02:38 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZNF260-202 - 412 1.5e-110 357.1 96.3 1 15 8.9e-10 5.7e-07 29.7 0.2 2 25 14 37 13 37 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF260-202 - 412 1.5e-110 357.1 96.3 2 15 4.3e-08 2.8e-05 24.3 3.3 1 24 41 64 41 66 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF260-202 - 412 1.5e-110 357.1 96.3 3 15 3.3e-10 2.1e-07 31.1 1.0 2 25 70 93 69 94 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF260-202 - 412 1.5e-110 357.1 96.3 4 15 2.5e-06 0.0016 18.8 1.9 2 18 98 114 97 115 0.88 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF260-202 - 412 1.5e-110 357.1 96.3 5 15 1.4e-09 8.9e-07 29.1 1.3 4 25 125 146 124 146 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF260-202 - 412 1.5e-110 357.1 96.3 6 15 3.6e-10 2.3e-07 30.9 0.3 2 25 151 174 150 175 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF260-202 - 412 1.5e-110 357.1 96.3 7 15 2.4e-10 1.5e-07 31.5 0.8 2 25 179 202 178 203 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF260-202 - 412 1.5e-110 357.1 96.3 8 15 1.8e-10 1.1e-07 31.9 0.1 2 24 207 229 206 231 0.90 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF260-202 - 412 1.5e-110 357.1 96.3 9 15 2.5e-12 1.6e-09 37.8 0.6 2 25 235 258 234 258 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF260-202 - 412 1.5e-110 357.1 96.3 10 15 7.6e-08 4.9e-05 23.6 0.3 1 21 262 282 262 287 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF260-202 - 412 1.5e-110 357.1 96.3 11 15 1.9e-09 1.2e-06 28.7 2.0 2 25 291 314 290 315 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF260-202 - 412 1.5e-110 357.1 96.3 12 15 2.5e-10 1.6e-07 31.4 0.1 2 24 319 341 318 341 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF260-202 - 412 1.5e-110 357.1 96.3 13 15 1.7e-10 1.1e-07 32.0 0.2 2 25 347 370 346 371 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF260-202 - 412 1.5e-110 357.1 96.3 14 15 1.8e-12 1.1e-09 38.2 0.1 4 25 377 398 375 399 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF260-202 - 412 1.5e-110 357.1 96.3 15 15 2.7 1.7e+03 -0.3 1.1 4 10 405 411 404 411 0.94 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZNF260-202 - 412 1.7e-74 242.3 96.4 1 14 5.4e-06 0.0035 17.7 1.4 1 23 27 49 27 49 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF260-202 - 412 1.7e-74 242.3 96.4 2 14 1.6e-06 0.001 19.4 3.2 1 23 55 77 55 77 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF260-202 - 412 1.7e-74 242.3 96.4 3 14 1.4e-07 9e-05 22.7 3.9 1 23 83 105 83 105 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF260-202 - 412 1.7e-74 242.3 96.4 4 14 1.4 8.9e+02 0.7 0.0 5 23 112 130 110 130 0.86 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF260-202 - 412 1.7e-74 242.3 96.4 5 14 4.3e-06 0.0028 18.0 0.1 1 23 136 158 136 158 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF260-202 - 412 1.7e-74 242.3 96.4 6 14 9.6e-08 6.2e-05 23.2 0.5 1 23 164 186 164 186 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF260-202 - 412 1.7e-74 242.3 96.4 7 14 2.4e-09 1.5e-06 28.3 0.2 1 23 192 214 192 214 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF260-202 - 412 1.7e-74 242.3 96.4 8 14 1.4e-09 9e-07 29.0 0.4 1 23 220 242 220 242 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF260-202 - 412 1.7e-74 242.3 96.4 9 14 2.9e-08 1.8e-05 24.9 0.3 1 23 248 270 248 270 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF260-202 - 412 1.7e-74 242.3 96.4 10 14 1.2e-06 0.00076 19.8 2.2 1 23 276 298 276 298 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF260-202 - 412 1.7e-74 242.3 96.4 11 14 6.9e-08 4.4e-05 23.7 0.2 1 23 304 326 304 326 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF260-202 - 412 1.7e-74 242.3 96.4 12 14 1.3e-09 8.1e-07 29.2 2.1 1 23 332 354 332 354 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF260-202 - 412 1.7e-74 242.3 96.4 13 14 1.4e-07 9e-05 22.7 0.2 3 23 362 382 360 382 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF260-202 - 412 1.7e-74 242.3 96.4 14 14 7.1e-07 0.00045 20.5 4.1 1 23 388 410 388 410 0.99 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZNF260-202 - 412 6.8e-44 144.7 93.5 1 14 4.8e-05 0.03 15.1 1.2 1 23 27 49 27 50 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF260-202 - 412 6.8e-44 144.7 93.5 2 14 0.00051 0.33 11.9 3.3 1 23 55 77 55 78 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF260-202 - 412 6.8e-44 144.7 93.5 3 14 3.6e-05 0.023 15.5 3.4 1 23 83 105 83 106 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF260-202 - 412 6.8e-44 144.7 93.5 4 14 2.3 1.5e+03 0.5 0.0 6 23 113 130 110 131 0.79 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF260-202 - 412 6.8e-44 144.7 93.5 5 14 0.00016 0.1 13.5 0.1 1 23 136 158 136 159 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF260-202 - 412 6.8e-44 144.7 93.5 6 14 1.1e-05 0.007 17.1 0.5 1 23 164 186 164 187 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF260-202 - 412 6.8e-44 144.7 93.5 7 14 1.1e-05 0.0068 17.2 0.3 1 23 192 214 192 215 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF260-202 - 412 6.8e-44 144.7 93.5 8 14 7.7e-06 0.0049 17.6 0.4 1 23 220 242 220 243 0.97 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF260-202 - 412 6.8e-44 144.7 93.5 9 14 1.8e-05 0.012 16.4 0.2 1 23 248 270 248 271 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF260-202 - 412 6.8e-44 144.7 93.5 10 14 0.00025 0.16 12.9 1.2 1 23 276 298 276 299 0.91 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF260-202 - 412 6.8e-44 144.7 93.5 11 14 1.3e-05 0.0081 16.9 0.2 1 23 304 326 304 327 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF260-202 - 412 6.8e-44 144.7 93.5 12 14 1.5e-06 0.00098 19.8 2.4 1 23 332 354 332 355 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF260-202 - 412 6.8e-44 144.7 93.5 13 14 0.00019 0.12 13.2 0.2 2 23 361 382 360 383 0.91 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF260-202 - 412 6.8e-44 144.7 93.5 14 14 0.0001 0.065 14.1 3.2 1 23 388 410 388 411 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF260-202 - 412 2.7e-22 78.3 93.6 1 13 2.1e-06 0.0014 18.6 1.4 2 24 27 49 27 52 0.95 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF260-202 - 412 2.7e-22 78.3 93.6 2 13 0.00034 0.22 11.6 3.8 2 24 55 77 54 80 0.95 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF260-202 - 412 2.7e-22 78.3 93.6 3 13 0.0081 5.2 7.2 2.7 1 16 82 97 82 108 0.74 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF260-202 - 412 2.7e-22 78.3 93.6 4 13 0.0033 2.1 8.4 0.2 2 12 136 146 136 157 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF260-202 - 412 2.7e-22 78.3 93.6 5 13 0.0016 1.1 9.4 0.8 2 20 164 182 164 186 0.90 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF260-202 - 412 2.7e-22 78.3 93.6 6 13 0.00044 0.28 11.2 0.4 2 18 192 208 192 215 0.78 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF260-202 - 412 2.7e-22 78.3 93.6 7 13 0.0088 5.6 7.1 0.8 2 24 220 242 220 245 0.90 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF260-202 - 412 2.7e-22 78.3 93.6 8 13 0.0012 0.76 9.9 1.3 2 22 248 268 248 270 0.83 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF260-202 - 412 2.7e-22 78.3 93.6 9 13 0.081 52 4.0 1.0 2 20 276 294 276 298 0.82 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF260-202 - 412 2.7e-22 78.3 93.6 10 13 1.4e-05 0.0087 16.0 0.1 2 20 304 322 304 326 0.92 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF260-202 - 412 2.7e-22 78.3 93.6 11 13 5.2e-05 0.034 14.2 2.6 2 24 332 354 332 357 0.95 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF260-202 - 412 2.7e-22 78.3 93.6 12 13 0.0023 1.4 9.0 0.3 2 22 360 380 360 384 0.79 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF260-202 - 412 2.7e-22 78.3 93.6 13 13 0.0027 1.7 8.7 0.6 2 12 388 398 388 399 0.93 C2H2-type zinc finger Zn-ribbon_8 PF09723.10 40 ZNF260-202 - 412 5.5e-15 55.2 69.7 1 12 0.00016 0.1 12.7 4.7 6 39 27 67 26 68 0.87 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF260-202 - 412 5.5e-15 55.2 69.7 2 12 0.0034 2.2 8.5 1.3 6 17 83 100 82 115 0.67 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF260-202 - 412 5.5e-15 55.2 69.7 3 12 0.00098 0.63 10.2 5.1 6 35 136 172 135 178 0.85 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF260-202 - 412 5.5e-15 55.2 69.7 4 12 0.0005 0.32 11.2 4.0 6 35 164 200 163 204 0.89 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF260-202 - 412 5.5e-15 55.2 69.7 5 12 2.6e-05 0.017 15.3 2.2 6 34 192 227 191 233 0.91 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF260-202 - 412 5.5e-15 55.2 69.7 6 12 0.00016 0.1 12.8 3.4 6 34 220 255 219 260 0.89 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF260-202 - 412 5.5e-15 55.2 69.7 7 12 0.00092 0.59 10.3 5.0 6 34 248 283 247 290 0.85 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF260-202 - 412 5.5e-15 55.2 69.7 8 12 1.2e-05 0.0079 16.3 2.9 6 38 276 315 275 316 0.91 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF260-202 - 412 5.5e-15 55.2 69.7 9 12 2.8e-05 0.018 15.2 2.5 6 34 304 339 303 343 0.90 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF260-202 - 412 5.5e-15 55.2 69.7 10 12 0.0024 1.5 9.0 4.9 6 35 332 368 331 371 0.84 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF260-202 - 412 5.5e-15 55.2 69.7 11 12 0.00027 0.17 12.0 3.5 6 35 360 396 359 400 0.80 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF260-202 - 412 5.5e-15 55.2 69.7 12 12 0.0091 5.8 7.1 0.6 6 16 388 398 386 409 0.82 Zinc ribbon domain DZR PF12773.7 49 ZNF260-202 - 412 2.9e-08 33.6 55.1 1 1 0.25 1.6e+02 2.4 0.2 28 43 26 41 7 45 0.73 Double zinc ribbon zf_UBZ PF18439.1 32 ZNF260-202 - 412 1.2e-07 31.2 57.0 1 13 0.012 7.7 6.2 0.3 3 20 27 45 25 46 0.88 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF260-202 - 412 1.2e-07 31.2 57.0 2 13 0.22 1.4e+02 2.2 0.7 2 11 54 63 53 70 0.84 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF260-202 - 412 1.2e-07 31.2 57.0 3 13 0.0023 1.4 8.5 0.1 3 21 83 102 81 102 0.88 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF260-202 - 412 1.2e-07 31.2 57.0 4 13 0.0078 5 6.8 0.1 3 20 136 154 134 155 0.81 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF260-202 - 412 1.2e-07 31.2 57.0 5 13 0.15 98 2.7 0.1 3 15 164 176 162 179 0.83 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF260-202 - 412 1.2e-07 31.2 57.0 6 13 0.0049 3.1 7.5 0.2 3 14 192 203 190 207 0.85 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF260-202 - 412 1.2e-07 31.2 57.0 7 13 0.37 2.3e+02 1.5 0.1 3 13 220 230 218 239 0.79 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF260-202 - 412 1.2e-07 31.2 57.0 8 13 0.00023 0.15 11.7 0.1 3 21 248 267 246 267 0.93 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF260-202 - 412 1.2e-07 31.2 57.0 9 13 0.23 1.5e+02 2.1 0.3 3 12 276 285 274 290 0.83 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF260-202 - 412 1.2e-07 31.2 57.0 10 13 0.058 37 4.0 0.2 3 13 304 314 302 317 0.87 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF260-202 - 412 1.2e-07 31.2 57.0 11 13 0.66 4.2e+02 0.6 0.4 3 12 332 341 330 351 0.80 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF260-202 - 412 1.2e-07 31.2 57.0 12 13 0.074 48 3.7 0.0 3 14 360 371 358 378 0.84 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF260-202 - 412 1.2e-07 31.2 57.0 13 13 0.0033 2.1 8.0 0.3 3 14 388 399 386 403 0.86 Ubiquitin-Binding Zinc Finger zinc_ribbon_15 PF17032.5 86 ZNF260-202 - 412 5.2e-07 30.3 61.8 1 7 0.007 4.5 8.1 5.9 34 76 23 65 16 70 0.86 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF260-202 - 412 5.2e-07 30.3 61.8 2 7 0.026 17 6.2 6.1 32 75 77 145 69 149 0.80 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF260-202 - 412 5.2e-07 30.3 61.8 3 7 0.0042 2.7 8.8 2.0 34 78 132 176 122 178 0.80 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF260-202 - 412 5.2e-07 30.3 61.8 4 7 0.0027 1.7 9.4 2.6 31 78 157 204 148 208 0.86 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF260-202 - 412 5.2e-07 30.3 61.8 5 7 0.0072 4.6 8.1 6.3 38 77 192 231 176 266 0.53 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF260-202 - 412 5.2e-07 30.3 61.8 6 7 0.03 19 6.1 7.4 38 75 276 313 265 346 0.71 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF260-202 - 412 5.2e-07 30.3 61.8 7 7 0.014 8.7 7.2 5.5 31 76 325 370 315 406 0.62 zinc-ribbon family # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF260-202.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF260-202.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF260-202.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF260-202.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF260-202.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:02:38 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZNF260-203 - 412 1.5e-110 357.1 96.3 1 15 8.9e-10 5.7e-07 29.7 0.2 2 25 14 37 13 37 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF260-203 - 412 1.5e-110 357.1 96.3 2 15 4.3e-08 2.8e-05 24.3 3.3 1 24 41 64 41 66 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF260-203 - 412 1.5e-110 357.1 96.3 3 15 3.3e-10 2.1e-07 31.1 1.0 2 25 70 93 69 94 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF260-203 - 412 1.5e-110 357.1 96.3 4 15 2.5e-06 0.0016 18.8 1.9 2 18 98 114 97 115 0.88 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF260-203 - 412 1.5e-110 357.1 96.3 5 15 1.4e-09 8.9e-07 29.1 1.3 4 25 125 146 124 146 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF260-203 - 412 1.5e-110 357.1 96.3 6 15 3.6e-10 2.3e-07 30.9 0.3 2 25 151 174 150 175 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF260-203 - 412 1.5e-110 357.1 96.3 7 15 2.4e-10 1.5e-07 31.5 0.8 2 25 179 202 178 203 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF260-203 - 412 1.5e-110 357.1 96.3 8 15 1.8e-10 1.1e-07 31.9 0.1 2 24 207 229 206 231 0.90 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF260-203 - 412 1.5e-110 357.1 96.3 9 15 2.5e-12 1.6e-09 37.8 0.6 2 25 235 258 234 258 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF260-203 - 412 1.5e-110 357.1 96.3 10 15 7.6e-08 4.9e-05 23.6 0.3 1 21 262 282 262 287 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF260-203 - 412 1.5e-110 357.1 96.3 11 15 1.9e-09 1.2e-06 28.7 2.0 2 25 291 314 290 315 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF260-203 - 412 1.5e-110 357.1 96.3 12 15 2.5e-10 1.6e-07 31.4 0.1 2 24 319 341 318 341 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF260-203 - 412 1.5e-110 357.1 96.3 13 15 1.7e-10 1.1e-07 32.0 0.2 2 25 347 370 346 371 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF260-203 - 412 1.5e-110 357.1 96.3 14 15 1.8e-12 1.1e-09 38.2 0.1 4 25 377 398 375 399 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF260-203 - 412 1.5e-110 357.1 96.3 15 15 2.7 1.7e+03 -0.3 1.1 4 10 405 411 404 411 0.94 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZNF260-203 - 412 1.7e-74 242.3 96.4 1 14 5.4e-06 0.0035 17.7 1.4 1 23 27 49 27 49 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF260-203 - 412 1.7e-74 242.3 96.4 2 14 1.6e-06 0.001 19.4 3.2 1 23 55 77 55 77 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF260-203 - 412 1.7e-74 242.3 96.4 3 14 1.4e-07 9e-05 22.7 3.9 1 23 83 105 83 105 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF260-203 - 412 1.7e-74 242.3 96.4 4 14 1.4 8.9e+02 0.7 0.0 5 23 112 130 110 130 0.86 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF260-203 - 412 1.7e-74 242.3 96.4 5 14 4.3e-06 0.0028 18.0 0.1 1 23 136 158 136 158 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF260-203 - 412 1.7e-74 242.3 96.4 6 14 9.6e-08 6.2e-05 23.2 0.5 1 23 164 186 164 186 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF260-203 - 412 1.7e-74 242.3 96.4 7 14 2.4e-09 1.5e-06 28.3 0.2 1 23 192 214 192 214 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF260-203 - 412 1.7e-74 242.3 96.4 8 14 1.4e-09 9e-07 29.0 0.4 1 23 220 242 220 242 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF260-203 - 412 1.7e-74 242.3 96.4 9 14 2.9e-08 1.8e-05 24.9 0.3 1 23 248 270 248 270 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF260-203 - 412 1.7e-74 242.3 96.4 10 14 1.2e-06 0.00076 19.8 2.2 1 23 276 298 276 298 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF260-203 - 412 1.7e-74 242.3 96.4 11 14 6.9e-08 4.4e-05 23.7 0.2 1 23 304 326 304 326 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF260-203 - 412 1.7e-74 242.3 96.4 12 14 1.3e-09 8.1e-07 29.2 2.1 1 23 332 354 332 354 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF260-203 - 412 1.7e-74 242.3 96.4 13 14 1.4e-07 9e-05 22.7 0.2 3 23 362 382 360 382 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF260-203 - 412 1.7e-74 242.3 96.4 14 14 7.1e-07 0.00045 20.5 4.1 1 23 388 410 388 410 0.99 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZNF260-203 - 412 6.8e-44 144.7 93.5 1 14 4.8e-05 0.03 15.1 1.2 1 23 27 49 27 50 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF260-203 - 412 6.8e-44 144.7 93.5 2 14 0.00051 0.33 11.9 3.3 1 23 55 77 55 78 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF260-203 - 412 6.8e-44 144.7 93.5 3 14 3.6e-05 0.023 15.5 3.4 1 23 83 105 83 106 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF260-203 - 412 6.8e-44 144.7 93.5 4 14 2.3 1.5e+03 0.5 0.0 6 23 113 130 110 131 0.79 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF260-203 - 412 6.8e-44 144.7 93.5 5 14 0.00016 0.1 13.5 0.1 1 23 136 158 136 159 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF260-203 - 412 6.8e-44 144.7 93.5 6 14 1.1e-05 0.007 17.1 0.5 1 23 164 186 164 187 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF260-203 - 412 6.8e-44 144.7 93.5 7 14 1.1e-05 0.0068 17.2 0.3 1 23 192 214 192 215 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF260-203 - 412 6.8e-44 144.7 93.5 8 14 7.7e-06 0.0049 17.6 0.4 1 23 220 242 220 243 0.97 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF260-203 - 412 6.8e-44 144.7 93.5 9 14 1.8e-05 0.012 16.4 0.2 1 23 248 270 248 271 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF260-203 - 412 6.8e-44 144.7 93.5 10 14 0.00025 0.16 12.9 1.2 1 23 276 298 276 299 0.91 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF260-203 - 412 6.8e-44 144.7 93.5 11 14 1.3e-05 0.0081 16.9 0.2 1 23 304 326 304 327 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF260-203 - 412 6.8e-44 144.7 93.5 12 14 1.5e-06 0.00098 19.8 2.4 1 23 332 354 332 355 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF260-203 - 412 6.8e-44 144.7 93.5 13 14 0.00019 0.12 13.2 0.2 2 23 361 382 360 383 0.91 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF260-203 - 412 6.8e-44 144.7 93.5 14 14 0.0001 0.065 14.1 3.2 1 23 388 410 388 411 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF260-203 - 412 2.7e-22 78.3 93.6 1 13 2.1e-06 0.0014 18.6 1.4 2 24 27 49 27 52 0.95 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF260-203 - 412 2.7e-22 78.3 93.6 2 13 0.00034 0.22 11.6 3.8 2 24 55 77 54 80 0.95 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF260-203 - 412 2.7e-22 78.3 93.6 3 13 0.0081 5.2 7.2 2.7 1 16 82 97 82 108 0.74 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF260-203 - 412 2.7e-22 78.3 93.6 4 13 0.0033 2.1 8.4 0.2 2 12 136 146 136 157 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF260-203 - 412 2.7e-22 78.3 93.6 5 13 0.0016 1.1 9.4 0.8 2 20 164 182 164 186 0.90 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF260-203 - 412 2.7e-22 78.3 93.6 6 13 0.00044 0.28 11.2 0.4 2 18 192 208 192 215 0.78 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF260-203 - 412 2.7e-22 78.3 93.6 7 13 0.0088 5.6 7.1 0.8 2 24 220 242 220 245 0.90 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF260-203 - 412 2.7e-22 78.3 93.6 8 13 0.0012 0.76 9.9 1.3 2 22 248 268 248 270 0.83 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF260-203 - 412 2.7e-22 78.3 93.6 9 13 0.081 52 4.0 1.0 2 20 276 294 276 298 0.82 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF260-203 - 412 2.7e-22 78.3 93.6 10 13 1.4e-05 0.0087 16.0 0.1 2 20 304 322 304 326 0.92 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF260-203 - 412 2.7e-22 78.3 93.6 11 13 5.2e-05 0.034 14.2 2.6 2 24 332 354 332 357 0.95 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF260-203 - 412 2.7e-22 78.3 93.6 12 13 0.0023 1.4 9.0 0.3 2 22 360 380 360 384 0.79 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF260-203 - 412 2.7e-22 78.3 93.6 13 13 0.0027 1.7 8.7 0.6 2 12 388 398 388 399 0.93 C2H2-type zinc finger Zn-ribbon_8 PF09723.10 40 ZNF260-203 - 412 5.5e-15 55.2 69.7 1 12 0.00016 0.1 12.7 4.7 6 39 27 67 26 68 0.87 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF260-203 - 412 5.5e-15 55.2 69.7 2 12 0.0034 2.2 8.5 1.3 6 17 83 100 82 115 0.67 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF260-203 - 412 5.5e-15 55.2 69.7 3 12 0.00098 0.63 10.2 5.1 6 35 136 172 135 178 0.85 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF260-203 - 412 5.5e-15 55.2 69.7 4 12 0.0005 0.32 11.2 4.0 6 35 164 200 163 204 0.89 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF260-203 - 412 5.5e-15 55.2 69.7 5 12 2.6e-05 0.017 15.3 2.2 6 34 192 227 191 233 0.91 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF260-203 - 412 5.5e-15 55.2 69.7 6 12 0.00016 0.1 12.8 3.4 6 34 220 255 219 260 0.89 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF260-203 - 412 5.5e-15 55.2 69.7 7 12 0.00092 0.59 10.3 5.0 6 34 248 283 247 290 0.85 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF260-203 - 412 5.5e-15 55.2 69.7 8 12 1.2e-05 0.0079 16.3 2.9 6 38 276 315 275 316 0.91 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF260-203 - 412 5.5e-15 55.2 69.7 9 12 2.8e-05 0.018 15.2 2.5 6 34 304 339 303 343 0.90 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF260-203 - 412 5.5e-15 55.2 69.7 10 12 0.0024 1.5 9.0 4.9 6 35 332 368 331 371 0.84 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF260-203 - 412 5.5e-15 55.2 69.7 11 12 0.00027 0.17 12.0 3.5 6 35 360 396 359 400 0.80 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF260-203 - 412 5.5e-15 55.2 69.7 12 12 0.0091 5.8 7.1 0.6 6 16 388 398 386 409 0.82 Zinc ribbon domain DZR PF12773.7 49 ZNF260-203 - 412 2.9e-08 33.6 55.1 1 1 0.25 1.6e+02 2.4 0.2 28 43 26 41 7 45 0.73 Double zinc ribbon zf_UBZ PF18439.1 32 ZNF260-203 - 412 1.2e-07 31.2 57.0 1 13 0.012 7.7 6.2 0.3 3 20 27 45 25 46 0.88 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF260-203 - 412 1.2e-07 31.2 57.0 2 13 0.22 1.4e+02 2.2 0.7 2 11 54 63 53 70 0.84 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF260-203 - 412 1.2e-07 31.2 57.0 3 13 0.0023 1.4 8.5 0.1 3 21 83 102 81 102 0.88 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF260-203 - 412 1.2e-07 31.2 57.0 4 13 0.0078 5 6.8 0.1 3 20 136 154 134 155 0.81 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF260-203 - 412 1.2e-07 31.2 57.0 5 13 0.15 98 2.7 0.1 3 15 164 176 162 179 0.83 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF260-203 - 412 1.2e-07 31.2 57.0 6 13 0.0049 3.1 7.5 0.2 3 14 192 203 190 207 0.85 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF260-203 - 412 1.2e-07 31.2 57.0 7 13 0.37 2.3e+02 1.5 0.1 3 13 220 230 218 239 0.79 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF260-203 - 412 1.2e-07 31.2 57.0 8 13 0.00023 0.15 11.7 0.1 3 21 248 267 246 267 0.93 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF260-203 - 412 1.2e-07 31.2 57.0 9 13 0.23 1.5e+02 2.1 0.3 3 12 276 285 274 290 0.83 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF260-203 - 412 1.2e-07 31.2 57.0 10 13 0.058 37 4.0 0.2 3 13 304 314 302 317 0.87 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF260-203 - 412 1.2e-07 31.2 57.0 11 13 0.66 4.2e+02 0.6 0.4 3 12 332 341 330 351 0.80 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF260-203 - 412 1.2e-07 31.2 57.0 12 13 0.074 48 3.7 0.0 3 14 360 371 358 378 0.84 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF260-203 - 412 1.2e-07 31.2 57.0 13 13 0.0033 2.1 8.0 0.3 3 14 388 399 386 403 0.86 Ubiquitin-Binding Zinc Finger zinc_ribbon_15 PF17032.5 86 ZNF260-203 - 412 5.2e-07 30.3 61.8 1 7 0.007 4.5 8.1 5.9 34 76 23 65 16 70 0.86 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF260-203 - 412 5.2e-07 30.3 61.8 2 7 0.026 17 6.2 6.1 32 75 77 145 69 149 0.80 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF260-203 - 412 5.2e-07 30.3 61.8 3 7 0.0042 2.7 8.8 2.0 34 78 132 176 122 178 0.80 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF260-203 - 412 5.2e-07 30.3 61.8 4 7 0.0027 1.7 9.4 2.6 31 78 157 204 148 208 0.86 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF260-203 - 412 5.2e-07 30.3 61.8 5 7 0.0072 4.6 8.1 6.3 38 77 192 231 176 266 0.53 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF260-203 - 412 5.2e-07 30.3 61.8 6 7 0.03 19 6.1 7.4 38 75 276 313 265 346 0.71 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF260-203 - 412 5.2e-07 30.3 61.8 7 7 0.014 8.7 7.2 5.5 31 76 325 370 315 406 0.62 zinc-ribbon family # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF260-203.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF260-203.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF260-203.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF260-203.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF260-203.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:02:39 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZNF260-204 - 412 1.5e-110 357.1 96.3 1 15 8.9e-10 5.7e-07 29.7 0.2 2 25 14 37 13 37 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF260-204 - 412 1.5e-110 357.1 96.3 2 15 4.3e-08 2.8e-05 24.3 3.3 1 24 41 64 41 66 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF260-204 - 412 1.5e-110 357.1 96.3 3 15 3.3e-10 2.1e-07 31.1 1.0 2 25 70 93 69 94 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF260-204 - 412 1.5e-110 357.1 96.3 4 15 2.5e-06 0.0016 18.8 1.9 2 18 98 114 97 115 0.88 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF260-204 - 412 1.5e-110 357.1 96.3 5 15 1.4e-09 8.9e-07 29.1 1.3 4 25 125 146 124 146 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF260-204 - 412 1.5e-110 357.1 96.3 6 15 3.6e-10 2.3e-07 30.9 0.3 2 25 151 174 150 175 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF260-204 - 412 1.5e-110 357.1 96.3 7 15 2.4e-10 1.5e-07 31.5 0.8 2 25 179 202 178 203 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF260-204 - 412 1.5e-110 357.1 96.3 8 15 1.8e-10 1.1e-07 31.9 0.1 2 24 207 229 206 231 0.90 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF260-204 - 412 1.5e-110 357.1 96.3 9 15 2.5e-12 1.6e-09 37.8 0.6 2 25 235 258 234 258 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF260-204 - 412 1.5e-110 357.1 96.3 10 15 7.6e-08 4.9e-05 23.6 0.3 1 21 262 282 262 287 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF260-204 - 412 1.5e-110 357.1 96.3 11 15 1.9e-09 1.2e-06 28.7 2.0 2 25 291 314 290 315 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF260-204 - 412 1.5e-110 357.1 96.3 12 15 2.5e-10 1.6e-07 31.4 0.1 2 24 319 341 318 341 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF260-204 - 412 1.5e-110 357.1 96.3 13 15 1.7e-10 1.1e-07 32.0 0.2 2 25 347 370 346 371 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF260-204 - 412 1.5e-110 357.1 96.3 14 15 1.8e-12 1.1e-09 38.2 0.1 4 25 377 398 375 399 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF260-204 - 412 1.5e-110 357.1 96.3 15 15 2.7 1.7e+03 -0.3 1.1 4 10 405 411 404 411 0.94 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZNF260-204 - 412 1.7e-74 242.3 96.4 1 14 5.4e-06 0.0035 17.7 1.4 1 23 27 49 27 49 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF260-204 - 412 1.7e-74 242.3 96.4 2 14 1.6e-06 0.001 19.4 3.2 1 23 55 77 55 77 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF260-204 - 412 1.7e-74 242.3 96.4 3 14 1.4e-07 9e-05 22.7 3.9 1 23 83 105 83 105 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF260-204 - 412 1.7e-74 242.3 96.4 4 14 1.4 8.9e+02 0.7 0.0 5 23 112 130 110 130 0.86 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF260-204 - 412 1.7e-74 242.3 96.4 5 14 4.3e-06 0.0028 18.0 0.1 1 23 136 158 136 158 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF260-204 - 412 1.7e-74 242.3 96.4 6 14 9.6e-08 6.2e-05 23.2 0.5 1 23 164 186 164 186 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF260-204 - 412 1.7e-74 242.3 96.4 7 14 2.4e-09 1.5e-06 28.3 0.2 1 23 192 214 192 214 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF260-204 - 412 1.7e-74 242.3 96.4 8 14 1.4e-09 9e-07 29.0 0.4 1 23 220 242 220 242 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF260-204 - 412 1.7e-74 242.3 96.4 9 14 2.9e-08 1.8e-05 24.9 0.3 1 23 248 270 248 270 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF260-204 - 412 1.7e-74 242.3 96.4 10 14 1.2e-06 0.00076 19.8 2.2 1 23 276 298 276 298 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF260-204 - 412 1.7e-74 242.3 96.4 11 14 6.9e-08 4.4e-05 23.7 0.2 1 23 304 326 304 326 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF260-204 - 412 1.7e-74 242.3 96.4 12 14 1.3e-09 8.1e-07 29.2 2.1 1 23 332 354 332 354 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF260-204 - 412 1.7e-74 242.3 96.4 13 14 1.4e-07 9e-05 22.7 0.2 3 23 362 382 360 382 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF260-204 - 412 1.7e-74 242.3 96.4 14 14 7.1e-07 0.00045 20.5 4.1 1 23 388 410 388 410 0.99 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZNF260-204 - 412 6.8e-44 144.7 93.5 1 14 4.8e-05 0.03 15.1 1.2 1 23 27 49 27 50 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF260-204 - 412 6.8e-44 144.7 93.5 2 14 0.00051 0.33 11.9 3.3 1 23 55 77 55 78 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF260-204 - 412 6.8e-44 144.7 93.5 3 14 3.6e-05 0.023 15.5 3.4 1 23 83 105 83 106 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF260-204 - 412 6.8e-44 144.7 93.5 4 14 2.3 1.5e+03 0.5 0.0 6 23 113 130 110 131 0.79 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF260-204 - 412 6.8e-44 144.7 93.5 5 14 0.00016 0.1 13.5 0.1 1 23 136 158 136 159 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF260-204 - 412 6.8e-44 144.7 93.5 6 14 1.1e-05 0.007 17.1 0.5 1 23 164 186 164 187 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF260-204 - 412 6.8e-44 144.7 93.5 7 14 1.1e-05 0.0068 17.2 0.3 1 23 192 214 192 215 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF260-204 - 412 6.8e-44 144.7 93.5 8 14 7.7e-06 0.0049 17.6 0.4 1 23 220 242 220 243 0.97 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF260-204 - 412 6.8e-44 144.7 93.5 9 14 1.8e-05 0.012 16.4 0.2 1 23 248 270 248 271 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF260-204 - 412 6.8e-44 144.7 93.5 10 14 0.00025 0.16 12.9 1.2 1 23 276 298 276 299 0.91 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF260-204 - 412 6.8e-44 144.7 93.5 11 14 1.3e-05 0.0081 16.9 0.2 1 23 304 326 304 327 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF260-204 - 412 6.8e-44 144.7 93.5 12 14 1.5e-06 0.00098 19.8 2.4 1 23 332 354 332 355 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF260-204 - 412 6.8e-44 144.7 93.5 13 14 0.00019 0.12 13.2 0.2 2 23 361 382 360 383 0.91 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF260-204 - 412 6.8e-44 144.7 93.5 14 14 0.0001 0.065 14.1 3.2 1 23 388 410 388 411 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF260-204 - 412 2.7e-22 78.3 93.6 1 13 2.1e-06 0.0014 18.6 1.4 2 24 27 49 27 52 0.95 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF260-204 - 412 2.7e-22 78.3 93.6 2 13 0.00034 0.22 11.6 3.8 2 24 55 77 54 80 0.95 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF260-204 - 412 2.7e-22 78.3 93.6 3 13 0.0081 5.2 7.2 2.7 1 16 82 97 82 108 0.74 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF260-204 - 412 2.7e-22 78.3 93.6 4 13 0.0033 2.1 8.4 0.2 2 12 136 146 136 157 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF260-204 - 412 2.7e-22 78.3 93.6 5 13 0.0016 1.1 9.4 0.8 2 20 164 182 164 186 0.90 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF260-204 - 412 2.7e-22 78.3 93.6 6 13 0.00044 0.28 11.2 0.4 2 18 192 208 192 215 0.78 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF260-204 - 412 2.7e-22 78.3 93.6 7 13 0.0088 5.6 7.1 0.8 2 24 220 242 220 245 0.90 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF260-204 - 412 2.7e-22 78.3 93.6 8 13 0.0012 0.76 9.9 1.3 2 22 248 268 248 270 0.83 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF260-204 - 412 2.7e-22 78.3 93.6 9 13 0.081 52 4.0 1.0 2 20 276 294 276 298 0.82 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF260-204 - 412 2.7e-22 78.3 93.6 10 13 1.4e-05 0.0087 16.0 0.1 2 20 304 322 304 326 0.92 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF260-204 - 412 2.7e-22 78.3 93.6 11 13 5.2e-05 0.034 14.2 2.6 2 24 332 354 332 357 0.95 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF260-204 - 412 2.7e-22 78.3 93.6 12 13 0.0023 1.4 9.0 0.3 2 22 360 380 360 384 0.79 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF260-204 - 412 2.7e-22 78.3 93.6 13 13 0.0027 1.7 8.7 0.6 2 12 388 398 388 399 0.93 C2H2-type zinc finger Zn-ribbon_8 PF09723.10 40 ZNF260-204 - 412 5.5e-15 55.2 69.7 1 12 0.00016 0.1 12.7 4.7 6 39 27 67 26 68 0.87 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF260-204 - 412 5.5e-15 55.2 69.7 2 12 0.0034 2.2 8.5 1.3 6 17 83 100 82 115 0.67 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF260-204 - 412 5.5e-15 55.2 69.7 3 12 0.00098 0.63 10.2 5.1 6 35 136 172 135 178 0.85 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF260-204 - 412 5.5e-15 55.2 69.7 4 12 0.0005 0.32 11.2 4.0 6 35 164 200 163 204 0.89 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF260-204 - 412 5.5e-15 55.2 69.7 5 12 2.6e-05 0.017 15.3 2.2 6 34 192 227 191 233 0.91 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF260-204 - 412 5.5e-15 55.2 69.7 6 12 0.00016 0.1 12.8 3.4 6 34 220 255 219 260 0.89 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF260-204 - 412 5.5e-15 55.2 69.7 7 12 0.00092 0.59 10.3 5.0 6 34 248 283 247 290 0.85 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF260-204 - 412 5.5e-15 55.2 69.7 8 12 1.2e-05 0.0079 16.3 2.9 6 38 276 315 275 316 0.91 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF260-204 - 412 5.5e-15 55.2 69.7 9 12 2.8e-05 0.018 15.2 2.5 6 34 304 339 303 343 0.90 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF260-204 - 412 5.5e-15 55.2 69.7 10 12 0.0024 1.5 9.0 4.9 6 35 332 368 331 371 0.84 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF260-204 - 412 5.5e-15 55.2 69.7 11 12 0.00027 0.17 12.0 3.5 6 35 360 396 359 400 0.80 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF260-204 - 412 5.5e-15 55.2 69.7 12 12 0.0091 5.8 7.1 0.6 6 16 388 398 386 409 0.82 Zinc ribbon domain DZR PF12773.7 49 ZNF260-204 - 412 2.9e-08 33.6 55.1 1 1 0.25 1.6e+02 2.4 0.2 28 43 26 41 7 45 0.73 Double zinc ribbon zf_UBZ PF18439.1 32 ZNF260-204 - 412 1.2e-07 31.2 57.0 1 13 0.012 7.7 6.2 0.3 3 20 27 45 25 46 0.88 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF260-204 - 412 1.2e-07 31.2 57.0 2 13 0.22 1.4e+02 2.2 0.7 2 11 54 63 53 70 0.84 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF260-204 - 412 1.2e-07 31.2 57.0 3 13 0.0023 1.4 8.5 0.1 3 21 83 102 81 102 0.88 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF260-204 - 412 1.2e-07 31.2 57.0 4 13 0.0078 5 6.8 0.1 3 20 136 154 134 155 0.81 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF260-204 - 412 1.2e-07 31.2 57.0 5 13 0.15 98 2.7 0.1 3 15 164 176 162 179 0.83 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF260-204 - 412 1.2e-07 31.2 57.0 6 13 0.0049 3.1 7.5 0.2 3 14 192 203 190 207 0.85 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF260-204 - 412 1.2e-07 31.2 57.0 7 13 0.37 2.3e+02 1.5 0.1 3 13 220 230 218 239 0.79 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF260-204 - 412 1.2e-07 31.2 57.0 8 13 0.00023 0.15 11.7 0.1 3 21 248 267 246 267 0.93 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF260-204 - 412 1.2e-07 31.2 57.0 9 13 0.23 1.5e+02 2.1 0.3 3 12 276 285 274 290 0.83 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF260-204 - 412 1.2e-07 31.2 57.0 10 13 0.058 37 4.0 0.2 3 13 304 314 302 317 0.87 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF260-204 - 412 1.2e-07 31.2 57.0 11 13 0.66 4.2e+02 0.6 0.4 3 12 332 341 330 351 0.80 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF260-204 - 412 1.2e-07 31.2 57.0 12 13 0.074 48 3.7 0.0 3 14 360 371 358 378 0.84 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF260-204 - 412 1.2e-07 31.2 57.0 13 13 0.0033 2.1 8.0 0.3 3 14 388 399 386 403 0.86 Ubiquitin-Binding Zinc Finger zinc_ribbon_15 PF17032.5 86 ZNF260-204 - 412 5.2e-07 30.3 61.8 1 7 0.007 4.5 8.1 5.9 34 76 23 65 16 70 0.86 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF260-204 - 412 5.2e-07 30.3 61.8 2 7 0.026 17 6.2 6.1 32 75 77 145 69 149 0.80 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF260-204 - 412 5.2e-07 30.3 61.8 3 7 0.0042 2.7 8.8 2.0 34 78 132 176 122 178 0.80 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF260-204 - 412 5.2e-07 30.3 61.8 4 7 0.0027 1.7 9.4 2.6 31 78 157 204 148 208 0.86 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF260-204 - 412 5.2e-07 30.3 61.8 5 7 0.0072 4.6 8.1 6.3 38 77 192 231 176 266 0.53 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF260-204 - 412 5.2e-07 30.3 61.8 6 7 0.03 19 6.1 7.4 38 75 276 313 265 346 0.71 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF260-204 - 412 5.2e-07 30.3 61.8 7 7 0.014 8.7 7.2 5.5 31 76 325 370 315 406 0.62 zinc-ribbon family # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF260-204.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF260-204.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF260-204.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF260-204.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF260-204.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:02:39 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZNF260-205 - 412 1.5e-110 357.1 96.3 1 15 8.9e-10 5.7e-07 29.7 0.2 2 25 14 37 13 37 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF260-205 - 412 1.5e-110 357.1 96.3 2 15 4.3e-08 2.8e-05 24.3 3.3 1 24 41 64 41 66 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF260-205 - 412 1.5e-110 357.1 96.3 3 15 3.3e-10 2.1e-07 31.1 1.0 2 25 70 93 69 94 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF260-205 - 412 1.5e-110 357.1 96.3 4 15 2.5e-06 0.0016 18.8 1.9 2 18 98 114 97 115 0.88 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF260-205 - 412 1.5e-110 357.1 96.3 5 15 1.4e-09 8.9e-07 29.1 1.3 4 25 125 146 124 146 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF260-205 - 412 1.5e-110 357.1 96.3 6 15 3.6e-10 2.3e-07 30.9 0.3 2 25 151 174 150 175 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF260-205 - 412 1.5e-110 357.1 96.3 7 15 2.4e-10 1.5e-07 31.5 0.8 2 25 179 202 178 203 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF260-205 - 412 1.5e-110 357.1 96.3 8 15 1.8e-10 1.1e-07 31.9 0.1 2 24 207 229 206 231 0.90 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF260-205 - 412 1.5e-110 357.1 96.3 9 15 2.5e-12 1.6e-09 37.8 0.6 2 25 235 258 234 258 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF260-205 - 412 1.5e-110 357.1 96.3 10 15 7.6e-08 4.9e-05 23.6 0.3 1 21 262 282 262 287 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF260-205 - 412 1.5e-110 357.1 96.3 11 15 1.9e-09 1.2e-06 28.7 2.0 2 25 291 314 290 315 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF260-205 - 412 1.5e-110 357.1 96.3 12 15 2.5e-10 1.6e-07 31.4 0.1 2 24 319 341 318 341 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF260-205 - 412 1.5e-110 357.1 96.3 13 15 1.7e-10 1.1e-07 32.0 0.2 2 25 347 370 346 371 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF260-205 - 412 1.5e-110 357.1 96.3 14 15 1.8e-12 1.1e-09 38.2 0.1 4 25 377 398 375 399 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF260-205 - 412 1.5e-110 357.1 96.3 15 15 2.7 1.7e+03 -0.3 1.1 4 10 405 411 404 411 0.94 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZNF260-205 - 412 1.7e-74 242.3 96.4 1 14 5.4e-06 0.0035 17.7 1.4 1 23 27 49 27 49 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF260-205 - 412 1.7e-74 242.3 96.4 2 14 1.6e-06 0.001 19.4 3.2 1 23 55 77 55 77 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF260-205 - 412 1.7e-74 242.3 96.4 3 14 1.4e-07 9e-05 22.7 3.9 1 23 83 105 83 105 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF260-205 - 412 1.7e-74 242.3 96.4 4 14 1.4 8.9e+02 0.7 0.0 5 23 112 130 110 130 0.86 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF260-205 - 412 1.7e-74 242.3 96.4 5 14 4.3e-06 0.0028 18.0 0.1 1 23 136 158 136 158 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF260-205 - 412 1.7e-74 242.3 96.4 6 14 9.6e-08 6.2e-05 23.2 0.5 1 23 164 186 164 186 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF260-205 - 412 1.7e-74 242.3 96.4 7 14 2.4e-09 1.5e-06 28.3 0.2 1 23 192 214 192 214 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF260-205 - 412 1.7e-74 242.3 96.4 8 14 1.4e-09 9e-07 29.0 0.4 1 23 220 242 220 242 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF260-205 - 412 1.7e-74 242.3 96.4 9 14 2.9e-08 1.8e-05 24.9 0.3 1 23 248 270 248 270 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF260-205 - 412 1.7e-74 242.3 96.4 10 14 1.2e-06 0.00076 19.8 2.2 1 23 276 298 276 298 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF260-205 - 412 1.7e-74 242.3 96.4 11 14 6.9e-08 4.4e-05 23.7 0.2 1 23 304 326 304 326 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF260-205 - 412 1.7e-74 242.3 96.4 12 14 1.3e-09 8.1e-07 29.2 2.1 1 23 332 354 332 354 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF260-205 - 412 1.7e-74 242.3 96.4 13 14 1.4e-07 9e-05 22.7 0.2 3 23 362 382 360 382 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF260-205 - 412 1.7e-74 242.3 96.4 14 14 7.1e-07 0.00045 20.5 4.1 1 23 388 410 388 410 0.99 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZNF260-205 - 412 6.8e-44 144.7 93.5 1 14 4.8e-05 0.03 15.1 1.2 1 23 27 49 27 50 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF260-205 - 412 6.8e-44 144.7 93.5 2 14 0.00051 0.33 11.9 3.3 1 23 55 77 55 78 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF260-205 - 412 6.8e-44 144.7 93.5 3 14 3.6e-05 0.023 15.5 3.4 1 23 83 105 83 106 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF260-205 - 412 6.8e-44 144.7 93.5 4 14 2.3 1.5e+03 0.5 0.0 6 23 113 130 110 131 0.79 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF260-205 - 412 6.8e-44 144.7 93.5 5 14 0.00016 0.1 13.5 0.1 1 23 136 158 136 159 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF260-205 - 412 6.8e-44 144.7 93.5 6 14 1.1e-05 0.007 17.1 0.5 1 23 164 186 164 187 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF260-205 - 412 6.8e-44 144.7 93.5 7 14 1.1e-05 0.0068 17.2 0.3 1 23 192 214 192 215 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF260-205 - 412 6.8e-44 144.7 93.5 8 14 7.7e-06 0.0049 17.6 0.4 1 23 220 242 220 243 0.97 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF260-205 - 412 6.8e-44 144.7 93.5 9 14 1.8e-05 0.012 16.4 0.2 1 23 248 270 248 271 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF260-205 - 412 6.8e-44 144.7 93.5 10 14 0.00025 0.16 12.9 1.2 1 23 276 298 276 299 0.91 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF260-205 - 412 6.8e-44 144.7 93.5 11 14 1.3e-05 0.0081 16.9 0.2 1 23 304 326 304 327 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF260-205 - 412 6.8e-44 144.7 93.5 12 14 1.5e-06 0.00098 19.8 2.4 1 23 332 354 332 355 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF260-205 - 412 6.8e-44 144.7 93.5 13 14 0.00019 0.12 13.2 0.2 2 23 361 382 360 383 0.91 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF260-205 - 412 6.8e-44 144.7 93.5 14 14 0.0001 0.065 14.1 3.2 1 23 388 410 388 411 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF260-205 - 412 2.7e-22 78.3 93.6 1 13 2.1e-06 0.0014 18.6 1.4 2 24 27 49 27 52 0.95 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF260-205 - 412 2.7e-22 78.3 93.6 2 13 0.00034 0.22 11.6 3.8 2 24 55 77 54 80 0.95 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF260-205 - 412 2.7e-22 78.3 93.6 3 13 0.0081 5.2 7.2 2.7 1 16 82 97 82 108 0.74 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF260-205 - 412 2.7e-22 78.3 93.6 4 13 0.0033 2.1 8.4 0.2 2 12 136 146 136 157 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF260-205 - 412 2.7e-22 78.3 93.6 5 13 0.0016 1.1 9.4 0.8 2 20 164 182 164 186 0.90 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF260-205 - 412 2.7e-22 78.3 93.6 6 13 0.00044 0.28 11.2 0.4 2 18 192 208 192 215 0.78 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF260-205 - 412 2.7e-22 78.3 93.6 7 13 0.0088 5.6 7.1 0.8 2 24 220 242 220 245 0.90 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF260-205 - 412 2.7e-22 78.3 93.6 8 13 0.0012 0.76 9.9 1.3 2 22 248 268 248 270 0.83 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF260-205 - 412 2.7e-22 78.3 93.6 9 13 0.081 52 4.0 1.0 2 20 276 294 276 298 0.82 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF260-205 - 412 2.7e-22 78.3 93.6 10 13 1.4e-05 0.0087 16.0 0.1 2 20 304 322 304 326 0.92 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF260-205 - 412 2.7e-22 78.3 93.6 11 13 5.2e-05 0.034 14.2 2.6 2 24 332 354 332 357 0.95 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF260-205 - 412 2.7e-22 78.3 93.6 12 13 0.0023 1.4 9.0 0.3 2 22 360 380 360 384 0.79 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF260-205 - 412 2.7e-22 78.3 93.6 13 13 0.0027 1.7 8.7 0.6 2 12 388 398 388 399 0.93 C2H2-type zinc finger Zn-ribbon_8 PF09723.10 40 ZNF260-205 - 412 5.5e-15 55.2 69.7 1 12 0.00016 0.1 12.7 4.7 6 39 27 67 26 68 0.87 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF260-205 - 412 5.5e-15 55.2 69.7 2 12 0.0034 2.2 8.5 1.3 6 17 83 100 82 115 0.67 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF260-205 - 412 5.5e-15 55.2 69.7 3 12 0.00098 0.63 10.2 5.1 6 35 136 172 135 178 0.85 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF260-205 - 412 5.5e-15 55.2 69.7 4 12 0.0005 0.32 11.2 4.0 6 35 164 200 163 204 0.89 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF260-205 - 412 5.5e-15 55.2 69.7 5 12 2.6e-05 0.017 15.3 2.2 6 34 192 227 191 233 0.91 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF260-205 - 412 5.5e-15 55.2 69.7 6 12 0.00016 0.1 12.8 3.4 6 34 220 255 219 260 0.89 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF260-205 - 412 5.5e-15 55.2 69.7 7 12 0.00092 0.59 10.3 5.0 6 34 248 283 247 290 0.85 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF260-205 - 412 5.5e-15 55.2 69.7 8 12 1.2e-05 0.0079 16.3 2.9 6 38 276 315 275 316 0.91 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF260-205 - 412 5.5e-15 55.2 69.7 9 12 2.8e-05 0.018 15.2 2.5 6 34 304 339 303 343 0.90 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF260-205 - 412 5.5e-15 55.2 69.7 10 12 0.0024 1.5 9.0 4.9 6 35 332 368 331 371 0.84 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF260-205 - 412 5.5e-15 55.2 69.7 11 12 0.00027 0.17 12.0 3.5 6 35 360 396 359 400 0.80 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF260-205 - 412 5.5e-15 55.2 69.7 12 12 0.0091 5.8 7.1 0.6 6 16 388 398 386 409 0.82 Zinc ribbon domain DZR PF12773.7 49 ZNF260-205 - 412 2.9e-08 33.6 55.1 1 1 0.25 1.6e+02 2.4 0.2 28 43 26 41 7 45 0.73 Double zinc ribbon zf_UBZ PF18439.1 32 ZNF260-205 - 412 1.2e-07 31.2 57.0 1 13 0.012 7.7 6.2 0.3 3 20 27 45 25 46 0.88 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF260-205 - 412 1.2e-07 31.2 57.0 2 13 0.22 1.4e+02 2.2 0.7 2 11 54 63 53 70 0.84 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF260-205 - 412 1.2e-07 31.2 57.0 3 13 0.0023 1.4 8.5 0.1 3 21 83 102 81 102 0.88 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF260-205 - 412 1.2e-07 31.2 57.0 4 13 0.0078 5 6.8 0.1 3 20 136 154 134 155 0.81 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF260-205 - 412 1.2e-07 31.2 57.0 5 13 0.15 98 2.7 0.1 3 15 164 176 162 179 0.83 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF260-205 - 412 1.2e-07 31.2 57.0 6 13 0.0049 3.1 7.5 0.2 3 14 192 203 190 207 0.85 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF260-205 - 412 1.2e-07 31.2 57.0 7 13 0.37 2.3e+02 1.5 0.1 3 13 220 230 218 239 0.79 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF260-205 - 412 1.2e-07 31.2 57.0 8 13 0.00023 0.15 11.7 0.1 3 21 248 267 246 267 0.93 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF260-205 - 412 1.2e-07 31.2 57.0 9 13 0.23 1.5e+02 2.1 0.3 3 12 276 285 274 290 0.83 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF260-205 - 412 1.2e-07 31.2 57.0 10 13 0.058 37 4.0 0.2 3 13 304 314 302 317 0.87 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF260-205 - 412 1.2e-07 31.2 57.0 11 13 0.66 4.2e+02 0.6 0.4 3 12 332 341 330 351 0.80 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF260-205 - 412 1.2e-07 31.2 57.0 12 13 0.074 48 3.7 0.0 3 14 360 371 358 378 0.84 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF260-205 - 412 1.2e-07 31.2 57.0 13 13 0.0033 2.1 8.0 0.3 3 14 388 399 386 403 0.86 Ubiquitin-Binding Zinc Finger zinc_ribbon_15 PF17032.5 86 ZNF260-205 - 412 5.2e-07 30.3 61.8 1 7 0.007 4.5 8.1 5.9 34 76 23 65 16 70 0.86 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF260-205 - 412 5.2e-07 30.3 61.8 2 7 0.026 17 6.2 6.1 32 75 77 145 69 149 0.80 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF260-205 - 412 5.2e-07 30.3 61.8 3 7 0.0042 2.7 8.8 2.0 34 78 132 176 122 178 0.80 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF260-205 - 412 5.2e-07 30.3 61.8 4 7 0.0027 1.7 9.4 2.6 31 78 157 204 148 208 0.86 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF260-205 - 412 5.2e-07 30.3 61.8 5 7 0.0072 4.6 8.1 6.3 38 77 192 231 176 266 0.53 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF260-205 - 412 5.2e-07 30.3 61.8 6 7 0.03 19 6.1 7.4 38 75 276 313 265 346 0.71 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF260-205 - 412 5.2e-07 30.3 61.8 7 7 0.014 8.7 7.2 5.5 31 76 325 370 315 406 0.62 zinc-ribbon family # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF260-205.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF260-205.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF260-205.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF260-205.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF260-205.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:02:40 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZNF26-201 - 533 4.1e-93 302.0 74.0 1 14 0.021 16 6.1 3.8 4 25 163 184 160 185 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF26-201 - 533 4.1e-93 302.0 74.0 2 14 4.3e-10 3.2e-07 30.5 0.1 4 25 191 212 188 213 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF26-201 - 533 4.1e-93 302.0 74.0 3 14 1.6e-11 1.2e-08 35.0 0.3 1 25 216 240 216 240 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF26-201 - 533 4.1e-93 302.0 74.0 4 14 1.3e-05 0.0098 16.3 0.1 5 24 248 267 245 268 0.90 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF26-201 - 533 4.1e-93 302.0 74.0 5 14 1.4e-10 1e-07 32.0 0.1 4 25 275 296 272 296 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF26-201 - 533 4.1e-93 302.0 74.0 6 14 1.2e-09 8.8e-07 29.1 2.0 4 25 303 324 301 325 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF26-201 - 533 4.1e-93 302.0 74.0 7 14 2e-11 1.5e-08 34.7 0.1 4 25 331 352 328 352 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF26-201 - 533 4.1e-93 302.0 74.0 8 14 1.8e-08 1.3e-05 25.4 0.0 4 25 359 380 356 381 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF26-201 - 533 4.1e-93 302.0 74.0 9 14 1.3e-07 9.7e-05 22.6 0.1 2 26 385 409 384 409 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF26-201 - 533 4.1e-93 302.0 74.0 10 14 9.2e-10 6.9e-07 29.4 0.4 2 24 413 435 412 435 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF26-201 - 533 4.1e-93 302.0 74.0 11 14 4.5e-07 0.00034 20.9 0.7 5 24 444 463 441 465 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF26-201 - 533 4.1e-93 302.0 74.0 12 14 1.3e-10 9.9e-08 32.1 0.5 2 25 469 492 468 493 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF26-201 - 533 4.1e-93 302.0 74.0 13 14 3.5e-11 2.6e-08 33.9 0.3 1 24 496 519 496 519 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF26-201 - 533 4.1e-93 302.0 74.0 14 14 9.8 7.3e+03 -2.3 0.6 2 10 525 533 524 533 0.83 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZNF26-201 - 533 6.9e-69 224.7 86.9 1 14 9.2 6.9e+03 -2.1 0.2 16 23 161 168 160 168 0.83 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF26-201 - 533 6.9e-69 224.7 86.9 2 14 5.9e-06 0.0044 17.4 2.6 2 23 175 196 174 196 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF26-201 - 533 6.9e-69 224.7 86.9 3 14 1.7e-08 1.3e-05 25.4 0.4 1 23 202 224 202 224 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF26-201 - 533 6.9e-69 224.7 86.9 4 14 4.9e-07 0.00037 20.8 0.3 1 23 230 252 230 252 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF26-201 - 533 6.9e-69 224.7 86.9 5 14 6.2e-05 0.046 14.2 0.3 3 23 260 280 258 280 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF26-201 - 533 6.9e-69 224.7 86.9 6 14 3.6e-07 0.00027 21.2 0.3 1 23 286 308 286 308 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF26-201 - 533 6.9e-69 224.7 86.9 7 14 1.2e-08 8.9e-06 25.9 2.0 1 23 314 336 314 336 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF26-201 - 533 6.9e-69 224.7 86.9 8 14 2.4e-07 0.00018 21.8 0.1 1 23 342 364 342 364 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF26-201 - 533 6.9e-69 224.7 86.9 9 14 1.6e-08 1.2e-05 25.4 0.1 1 23 370 392 370 392 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF26-201 - 533 6.9e-69 224.7 86.9 10 14 6.2e-08 4.6e-05 23.6 0.5 3 23 400 420 398 420 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF26-201 - 533 6.9e-69 224.7 86.9 11 14 8.5e-07 0.00063 20.1 1.1 1 23 426 448 426 448 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF26-201 - 533 6.9e-69 224.7 86.9 12 14 1.3e-07 9.5e-05 22.6 0.3 1 23 454 476 454 476 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF26-201 - 533 6.9e-69 224.7 86.9 13 14 5.6e-09 4.2e-06 26.9 0.8 1 23 482 504 482 504 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF26-201 - 533 6.9e-69 224.7 86.9 14 14 1.2e-05 0.0089 16.4 1.8 2 23 511 532 510 532 0.97 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZNF26-201 - 533 7.9e-42 138.3 92.6 1 14 3.8 2.8e+03 -0.3 0.2 14 23 157 168 151 169 0.72 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF26-201 - 533 7.9e-42 138.3 92.6 2 14 2.8e-05 0.021 15.6 3.1 2 23 175 196 174 197 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF26-201 - 533 7.9e-42 138.3 92.6 3 14 7.2e-05 0.054 14.4 0.5 1 23 202 224 202 225 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF26-201 - 533 7.9e-42 138.3 92.6 4 14 0.00016 0.12 13.3 0.6 1 23 230 252 230 253 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF26-201 - 533 7.9e-42 138.3 92.6 5 14 0.0031 2.3 9.3 0.5 2 23 259 280 258 281 0.87 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF26-201 - 533 7.9e-42 138.3 92.6 6 14 2.8e-05 0.021 15.6 0.6 1 23 286 308 286 309 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF26-201 - 533 7.9e-42 138.3 92.6 7 14 3e-06 0.0022 18.7 1.8 1 23 314 336 314 337 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF26-201 - 533 7.9e-42 138.3 92.6 8 14 0.0002 0.15 13.0 0.1 1 23 342 364 342 365 0.91 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF26-201 - 533 7.9e-42 138.3 92.6 9 14 4.2e-06 0.0032 18.2 0.1 1 23 370 392 370 393 0.97 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF26-201 - 533 7.9e-42 138.3 92.6 10 14 1.2e-05 0.0091 16.8 0.5 2 23 399 420 398 421 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF26-201 - 533 7.9e-42 138.3 92.6 11 14 2.4e-05 0.018 15.9 1.3 1 23 426 448 426 449 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF26-201 - 533 7.9e-42 138.3 92.6 12 14 4e-05 0.03 15.2 0.3 1 23 454 476 454 477 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF26-201 - 533 7.9e-42 138.3 92.6 13 14 7e-06 0.0052 17.5 1.1 1 23 482 504 482 505 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF26-201 - 533 7.9e-42 138.3 92.6 14 14 5.8e-05 0.044 14.6 2.4 1 23 510 532 510 533 0.93 C2H2-type zinc finger KRAB PF01352.27 42 ZNF26-201 - 533 7.9e-20 70.2 0.2 1 1 2.5e-22 1.8e-19 69.1 0.2 2 42 14 54 13 54 0.98 KRAB box zf-C2H2_6 PF13912.6 27 ZNF26-201 - 533 5.8e-13 48.5 94.1 1 13 0.013 9.7 6.3 0.6 3 12 175 184 175 196 0.89 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF26-201 - 533 5.8e-13 48.5 94.1 2 13 0.0044 3.3 7.8 0.6 2 24 202 224 202 227 0.89 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF26-201 - 533 5.8e-13 48.5 94.1 3 13 0.02 15 5.7 1.9 2 12 230 240 230 240 0.90 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF26-201 - 533 5.8e-13 48.5 94.1 4 13 0.026 19 5.4 0.3 2 11 258 267 258 268 0.87 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF26-201 - 533 5.8e-13 48.5 94.1 5 13 0.00092 0.69 10.0 0.8 2 12 286 296 286 296 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF26-201 - 533 5.8e-13 48.5 94.1 6 13 0.00023 0.17 11.9 1.1 2 13 314 325 314 325 0.96 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF26-201 - 533 5.8e-13 48.5 94.1 7 13 0.022 16 5.6 0.2 2 13 342 353 342 361 0.81 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF26-201 - 533 5.8e-13 48.5 94.1 8 13 0.00052 0.39 10.8 0.4 2 24 370 392 370 395 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF26-201 - 533 5.8e-13 48.5 94.1 9 13 0.00023 0.17 11.9 0.8 2 24 398 420 398 423 0.87 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF26-201 - 533 5.8e-13 48.5 94.1 10 13 0.29 2.2e+02 2.0 1.7 2 11 426 435 426 439 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF26-201 - 533 5.8e-13 48.5 94.1 11 13 0.00032 0.24 11.5 0.6 2 25 454 477 454 479 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF26-201 - 533 5.8e-13 48.5 94.1 12 13 0.0011 0.79 9.8 1.5 2 22 482 502 482 506 0.80 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF26-201 - 533 5.8e-13 48.5 94.1 13 13 0.0057 4.3 7.5 5.0 3 25 511 533 510 533 0.92 C2H2-type zinc finger C1_4 PF07975.12 55 ZNF26-201 - 533 1.9e-08 34.4 50.9 1 10 1.3 9.8e+02 0.1 1.2 22 49 170 197 161 199 0.75 TFIIH C1-like domain C1_4 PF07975.12 55 ZNF26-201 - 533 1.9e-08 34.4 50.9 2 10 0.014 10 6.4 2.5 2 49 176 225 175 228 0.71 TFIIH C1-like domain C1_4 PF07975.12 55 ZNF26-201 - 533 1.9e-08 34.4 50.9 3 10 0.00011 0.079 13.2 3.8 1 49 203 253 203 262 0.81 TFIIH C1-like domain C1_4 PF07975.12 55 ZNF26-201 - 533 1.9e-08 34.4 50.9 4 10 0.041 31 4.9 3.2 20 49 280 309 258 319 0.71 TFIIH C1-like domain C1_4 PF07975.12 55 ZNF26-201 - 533 1.9e-08 34.4 50.9 5 10 0.0029 2.2 8.6 0.8 2 49 316 365 315 368 0.80 TFIIH C1-like domain C1_4 PF07975.12 55 ZNF26-201 - 533 1.9e-08 34.4 50.9 6 10 0.86 6.4e+02 0.7 0.1 25 35 369 379 365 381 0.85 TFIIH C1-like domain C1_4 PF07975.12 55 ZNF26-201 - 533 1.9e-08 34.4 50.9 7 10 0.091 68 3.8 0.8 2 48 372 420 371 423 0.75 TFIIH C1-like domain C1_4 PF07975.12 55 ZNF26-201 - 533 1.9e-08 34.4 50.9 8 10 0.00074 0.55 10.5 2.9 2 49 400 449 398 452 0.78 TFIIH C1-like domain C1_4 PF07975.12 55 ZNF26-201 - 533 1.9e-08 34.4 50.9 9 10 0.021 16 5.9 0.1 21 48 449 476 446 479 0.83 TFIIH C1-like domain C1_4 PF07975.12 55 ZNF26-201 - 533 1.9e-08 34.4 50.9 10 10 0.00014 0.1 12.9 1.6 1 48 483 532 483 533 0.84 TFIIH C1-like domain Zn-ribbon_8 PF09723.10 40 ZNF26-201 - 533 4.4e-08 33.1 63.4 1 10 0.38 2.9e+02 1.7 1.8 26 35 173 182 159 189 0.62 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF26-201 - 533 4.4e-08 33.1 63.4 2 10 2.2 1.6e+03 -0.7 8.0 8 34 176 209 172 214 0.78 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF26-201 - 533 4.4e-08 33.1 63.4 3 10 0.051 38 4.5 6.3 6 33 202 236 201 237 0.93 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF26-201 - 533 4.4e-08 33.1 63.4 4 10 0.00022 0.16 12.1 1.4 6 34 230 265 228 268 0.93 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF26-201 - 533 4.4e-08 33.1 63.4 5 10 2.5e-05 0.019 15.1 2.2 6 36 286 323 285 326 0.89 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF26-201 - 533 4.4e-08 33.1 63.4 6 10 1.7e-05 0.012 15.7 0.6 6 36 342 379 341 382 0.90 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF26-201 - 533 4.4e-08 33.1 63.4 7 10 0.0028 2.1 8.5 3.5 6 35 370 406 369 412 0.82 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF26-201 - 533 4.4e-08 33.1 63.4 8 10 0.061 46 4.2 3.0 6 33 398 432 397 435 0.80 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF26-201 - 533 4.4e-08 33.1 63.4 9 10 0.33 2.5e+02 1.9 6.4 6 38 426 465 425 467 0.81 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF26-201 - 533 4.4e-08 33.1 63.4 10 10 0.00011 0.083 13.0 2.5 6 34 482 517 481 519 0.89 Zinc ribbon domain # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF26-201.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF26-201.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF26-201.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF26-201.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF26-201.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:02:40 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZNF26-202 - 513 2.2e-93 302.9 74.0 1 14 0.02 15 6.2 3.8 4 25 143 164 140 165 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF26-202 - 513 2.2e-93 302.9 74.0 2 14 4.1e-10 3.1e-07 30.5 0.1 4 25 171 192 168 193 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF26-202 - 513 2.2e-93 302.9 74.0 3 14 1.5e-11 1.1e-08 35.0 0.3 1 25 196 220 196 220 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF26-202 - 513 2.2e-93 302.9 74.0 4 14 1.3e-05 0.0094 16.4 0.1 5 24 228 247 225 248 0.90 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF26-202 - 513 2.2e-93 302.9 74.0 5 14 1.3e-10 9.9e-08 32.1 0.1 4 25 255 276 252 276 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF26-202 - 513 2.2e-93 302.9 74.0 6 14 1.1e-09 8.4e-07 29.2 2.0 4 25 283 304 281 305 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF26-202 - 513 2.2e-93 302.9 74.0 7 14 1.9e-11 1.4e-08 34.8 0.1 4 25 311 332 308 332 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF26-202 - 513 2.2e-93 302.9 74.0 8 14 1.7e-08 1.2e-05 25.4 0.0 4 25 339 360 336 361 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF26-202 - 513 2.2e-93 302.9 74.0 9 14 1.2e-07 9.3e-05 22.7 0.1 2 26 365 389 364 389 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF26-202 - 513 2.2e-93 302.9 74.0 10 14 8.8e-10 6.6e-07 29.5 0.4 2 24 393 415 392 415 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF26-202 - 513 2.2e-93 302.9 74.0 11 14 4.3e-07 0.00032 21.0 0.7 5 24 424 443 421 445 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF26-202 - 513 2.2e-93 302.9 74.0 12 14 1.3e-10 9.4e-08 32.1 0.5 2 25 449 472 448 473 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF26-202 - 513 2.2e-93 302.9 74.0 13 14 3.3e-11 2.5e-08 34.0 0.3 1 24 476 499 476 499 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF26-202 - 513 2.2e-93 302.9 74.0 14 14 9.3 7e+03 -2.2 0.6 2 10 505 513 504 513 0.83 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZNF26-202 - 513 4.2e-69 225.3 86.9 1 14 8.8 6.6e+03 -2.1 0.2 16 23 141 148 140 148 0.83 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF26-202 - 513 4.2e-69 225.3 86.9 2 14 5.6e-06 0.0042 17.5 2.6 2 23 155 176 154 176 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF26-202 - 513 4.2e-69 225.3 86.9 3 14 1.7e-08 1.2e-05 25.4 0.4 1 23 182 204 182 204 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF26-202 - 513 4.2e-69 225.3 86.9 4 14 4.7e-07 0.00035 20.9 0.3 1 23 210 232 210 232 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF26-202 - 513 4.2e-69 225.3 86.9 5 14 5.9e-05 0.044 14.3 0.3 3 23 240 260 238 260 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF26-202 - 513 4.2e-69 225.3 86.9 6 14 3.5e-07 0.00026 21.3 0.3 1 23 266 288 266 288 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF26-202 - 513 4.2e-69 225.3 86.9 7 14 1.1e-08 8.5e-06 25.9 2.0 1 23 294 316 294 316 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF26-202 - 513 4.2e-69 225.3 86.9 8 14 2.3e-07 0.00017 21.9 0.1 1 23 322 344 322 344 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF26-202 - 513 4.2e-69 225.3 86.9 9 14 1.6e-08 1.2e-05 25.5 0.1 1 23 350 372 350 372 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF26-202 - 513 4.2e-69 225.3 86.9 10 14 5.9e-08 4.4e-05 23.7 0.5 3 23 380 400 378 400 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF26-202 - 513 4.2e-69 225.3 86.9 11 14 8.1e-07 0.0006 20.1 1.1 1 23 406 428 406 428 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF26-202 - 513 4.2e-69 225.3 86.9 12 14 1.2e-07 9.1e-05 22.7 0.3 1 23 434 456 434 456 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF26-202 - 513 4.2e-69 225.3 86.9 13 14 5.4e-09 4e-06 27.0 0.8 1 23 462 484 462 484 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF26-202 - 513 4.2e-69 225.3 86.9 14 14 1.1e-05 0.0085 16.5 1.8 2 23 491 512 490 512 0.97 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZNF26-202 - 513 4.4e-42 139.1 92.6 1 14 3.6 2.7e+03 -0.3 0.2 14 23 137 148 131 149 0.72 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF26-202 - 513 4.4e-42 139.1 92.6 2 14 2.7e-05 0.02 15.7 3.1 2 23 155 176 154 177 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF26-202 - 513 4.4e-42 139.1 92.6 3 14 6.9e-05 0.052 14.4 0.5 1 23 182 204 182 205 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF26-202 - 513 4.4e-42 139.1 92.6 4 14 0.00015 0.12 13.3 0.6 1 23 210 232 210 233 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF26-202 - 513 4.4e-42 139.1 92.6 5 14 0.003 2.2 9.3 0.5 2 23 239 260 238 261 0.87 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF26-202 - 513 4.4e-42 139.1 92.6 6 14 2.7e-05 0.02 15.7 0.6 1 23 266 288 266 289 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF26-202 - 513 4.4e-42 139.1 92.6 7 14 2.8e-06 0.0021 18.7 1.8 1 23 294 316 294 317 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF26-202 - 513 4.4e-42 139.1 92.6 8 14 0.00019 0.14 13.1 0.1 1 23 322 344 322 345 0.91 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF26-202 - 513 4.4e-42 139.1 92.6 9 14 4e-06 0.003 18.2 0.1 1 23 350 372 350 373 0.97 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF26-202 - 513 4.4e-42 139.1 92.6 10 14 1.2e-05 0.0087 16.8 0.5 2 23 379 400 378 401 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF26-202 - 513 4.4e-42 139.1 92.6 11 14 2.3e-05 0.017 15.9 1.3 1 23 406 428 406 429 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF26-202 - 513 4.4e-42 139.1 92.6 12 14 3.8e-05 0.028 15.2 0.3 1 23 434 456 434 457 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF26-202 - 513 4.4e-42 139.1 92.6 13 14 6.7e-06 0.005 17.6 1.1 1 23 462 484 462 485 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF26-202 - 513 4.4e-42 139.1 92.6 14 14 5.6e-05 0.042 14.7 2.4 1 23 490 512 490 513 0.93 C2H2-type zinc finger KRAB PF01352.27 42 ZNF26-202 - 513 5.8e-16 57.9 0.5 1 1 1.8e-18 1.4e-15 56.7 0.5 9 42 1 34 1 34 0.98 KRAB box zf-C2H2_6 PF13912.6 27 ZNF26-202 - 513 3.8e-13 49.1 94.3 1 13 0.012 9.3 6.4 0.6 3 12 155 164 155 176 0.89 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF26-202 - 513 3.8e-13 49.1 94.3 2 13 0.0042 3.2 7.9 0.6 2 24 182 204 182 207 0.89 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF26-202 - 513 3.8e-13 49.1 94.3 3 13 0.019 14 5.8 1.9 2 12 210 220 210 220 0.90 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF26-202 - 513 3.8e-13 49.1 94.3 4 13 0.025 18 5.4 0.3 2 11 238 247 238 248 0.87 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF26-202 - 513 3.8e-13 49.1 94.3 5 13 0.00088 0.66 10.0 0.8 2 12 266 276 266 276 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF26-202 - 513 3.8e-13 49.1 94.3 6 13 0.00022 0.17 12.0 1.1 2 13 294 305 294 305 0.96 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF26-202 - 513 3.8e-13 49.1 94.3 7 13 0.021 15 5.7 0.2 2 13 322 333 322 341 0.81 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF26-202 - 513 3.8e-13 49.1 94.3 8 13 0.0005 0.37 10.8 0.4 2 24 350 372 350 375 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF26-202 - 513 3.8e-13 49.1 94.3 9 13 0.00022 0.17 11.9 0.8 2 24 378 400 378 403 0.87 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF26-202 - 513 3.8e-13 49.1 94.3 10 13 0.28 2.1e+02 2.1 1.7 2 11 406 415 406 419 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF26-202 - 513 3.8e-13 49.1 94.3 11 13 0.0003 0.23 11.5 0.6 2 25 434 457 434 459 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF26-202 - 513 3.8e-13 49.1 94.3 12 13 0.001 0.75 9.9 1.5 2 22 462 482 462 486 0.80 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF26-202 - 513 3.8e-13 49.1 94.3 13 13 0.0064 4.8 7.3 5.3 3 25 491 513 490 513 0.92 C2H2-type zinc finger C1_4 PF07975.12 55 ZNF26-202 - 513 9.4e-09 35.4 50.5 1 10 1.3 9.4e+02 0.2 1.2 22 49 150 177 141 179 0.75 TFIIH C1-like domain C1_4 PF07975.12 55 ZNF26-202 - 513 9.4e-09 35.4 50.5 2 10 0.037 28 5.0 4.1 2 49 156 205 153 208 0.72 TFIIH C1-like domain C1_4 PF07975.12 55 ZNF26-202 - 513 9.4e-09 35.4 50.5 3 10 0.0001 0.075 13.3 3.8 1 49 183 233 183 242 0.81 TFIIH C1-like domain C1_4 PF07975.12 55 ZNF26-202 - 513 9.4e-09 35.4 50.5 4 10 0.0066 4.9 7.5 0.5 19 49 259 289 238 292 0.69 TFIIH C1-like domain C1_4 PF07975.12 55 ZNF26-202 - 513 9.4e-09 35.4 50.5 5 10 0.0025 1.9 8.8 0.7 2 49 296 345 295 349 0.80 TFIIH C1-like domain C1_4 PF07975.12 55 ZNF26-202 - 513 9.4e-09 35.4 50.5 6 10 0.94 7e+02 0.6 0.1 26 35 350 359 346 361 0.86 TFIIH C1-like domain C1_4 PF07975.12 55 ZNF26-202 - 513 9.4e-09 35.4 50.5 7 10 0.087 65 3.9 0.8 2 48 352 400 351 403 0.75 TFIIH C1-like domain C1_4 PF07975.12 55 ZNF26-202 - 513 9.4e-09 35.4 50.5 8 10 0.00066 0.49 10.7 2.7 2 49 380 429 379 431 0.78 TFIIH C1-like domain C1_4 PF07975.12 55 ZNF26-202 - 513 9.4e-09 35.4 50.5 9 10 0.02 15 5.9 0.1 21 48 429 456 426 459 0.83 TFIIH C1-like domain C1_4 PF07975.12 55 ZNF26-202 - 513 9.4e-09 35.4 50.5 10 10 0.00012 0.092 13.0 1.5 1 48 463 512 463 513 0.84 TFIIH C1-like domain Zn-ribbon_8 PF09723.10 40 ZNF26-202 - 513 5.2e-08 32.9 64.2 1 10 0.43 3.2e+02 1.5 1.9 25 35 152 162 139 166 0.59 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF26-202 - 513 5.2e-08 32.9 64.2 2 10 2.3 1.7e+03 -0.8 8.1 8 34 156 189 153 194 0.78 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF26-202 - 513 5.2e-08 32.9 64.2 3 10 0.053 40 4.4 6.4 6 33 182 216 181 217 0.93 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF26-202 - 513 5.2e-08 32.9 64.2 4 10 0.0002 0.15 12.2 1.3 6 34 210 245 208 248 0.93 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF26-202 - 513 5.2e-08 32.9 64.2 5 10 2.4e-05 0.018 15.2 2.2 6 36 266 303 265 306 0.89 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF26-202 - 513 5.2e-08 32.9 64.2 6 10 1.9e-05 0.014 15.5 0.9 6 36 322 359 321 363 0.90 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF26-202 - 513 5.2e-08 32.9 64.2 7 10 0.0026 2 8.6 3.5 6 35 350 386 348 391 0.83 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF26-202 - 513 5.2e-08 32.9 64.2 8 10 0.076 57 3.9 3.2 6 33 378 412 377 414 0.79 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF26-202 - 513 5.2e-08 32.9 64.2 9 10 0.38 2.9e+02 1.7 6.7 6 38 406 445 405 447 0.81 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF26-202 - 513 5.2e-08 32.9 64.2 10 10 0.00011 0.079 13.1 2.5 6 34 462 497 461 499 0.89 Zinc ribbon domain # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF26-202.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF26-202.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF26-202.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF26-202.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF26-202.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:02:41 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF26-203.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF26-203.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF26-203.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF26-203.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF26-203.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:02:41 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF26-204.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF26-204.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF26-204.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF26-204.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF26-204.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:02:42 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF26-205.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF26-205.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF26-205.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF26-205.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF26-205.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:02:42 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF26-206.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF26-206.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF26-206.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF26-206.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF26-206.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:02:42 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF26-207.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF26-207.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF26-207.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF26-207.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF26-207.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:02:43 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZNF263-201 - 683 6.6e-56 184.4 87.8 1 12 0.00033 0.33 11.5 0.3 11 26 374 389 370 389 0.86 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF263-201 - 683 6.6e-56 184.4 87.8 2 12 0.51 5.1e+02 1.4 0.0 1 9 392 400 392 411 0.86 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF263-201 - 683 6.6e-56 184.4 87.8 3 12 0.0088 8.8 7.0 1.1 9 25 428 444 424 445 0.90 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF263-201 - 683 6.6e-56 184.4 87.8 4 12 2.7e-10 2.7e-07 30.7 6.1 1 25 448 472 448 473 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF263-201 - 683 6.6e-56 184.4 87.8 5 12 1.7e-10 1.7e-07 31.3 3.1 1 26 476 501 476 501 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF263-201 - 683 6.6e-56 184.4 87.8 6 12 6e-13 6e-10 39.1 0.6 1 25 504 528 504 529 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF263-201 - 683 6.6e-56 184.4 87.8 7 12 0.23 2.3e+02 2.5 0.3 1 17 532 551 532 554 0.76 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF263-201 - 683 6.6e-56 184.4 87.8 8 12 0.0023 2.3 8.8 0.3 9 25 568 585 566 586 0.84 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF263-201 - 683 6.6e-56 184.4 87.8 9 12 4.7e-11 4.7e-08 33.1 4.3 1 26 589 614 589 614 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF263-201 - 683 6.6e-56 184.4 87.8 10 12 1.1e-11 1.1e-08 35.1 1.3 1 26 617 642 617 642 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF263-201 - 683 6.6e-56 184.4 87.8 11 12 8.9e-11 8.9e-08 32.2 0.6 4 25 648 669 645 670 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF263-201 - 683 6.6e-56 184.4 87.8 12 12 0.12 1.2e+02 3.4 0.7 2 11 674 683 673 683 0.92 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZNF263-201 - 683 5.1e-51 168.4 93.7 1 9 1.1e-08 1.1e-05 25.6 1.4 3 23 380 400 378 400 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF263-201 - 683 5.1e-51 168.4 93.7 2 9 2.8e-07 0.00028 21.2 8.5 1 23 434 456 434 456 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF263-201 - 683 5.1e-51 168.4 93.7 3 9 1.5e-06 0.0015 18.9 8.7 1 23 462 484 462 484 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF263-201 - 683 5.1e-51 168.4 93.7 4 9 3.5e-09 3.5e-06 27.1 0.6 1 23 490 512 490 512 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF263-201 - 683 5.1e-51 168.4 93.7 5 9 2.6e-10 2.6e-07 30.7 1.8 1 23 518 540 518 540 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF263-201 - 683 5.1e-51 168.4 93.7 6 9 3.5e-07 0.00035 20.9 3.2 1 23 575 597 575 597 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF263-201 - 683 5.1e-51 168.4 93.7 7 9 1.2e-08 1.2e-05 25.4 2.3 1 23 603 625 603 625 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF263-201 - 683 5.1e-51 168.4 93.7 8 9 1.6e-06 0.0016 18.8 5.0 1 23 631 653 631 653 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF263-201 - 683 5.1e-51 168.4 93.7 9 9 3.6e-09 3.6e-06 27.1 1.9 1 23 659 681 659 681 0.99 Zinc finger, C2H2 type SCAN PF02023.17 90 ZNF263-201 - 683 2.7e-40 136.1 2.7 1 1 5.4e-43 5.4e-40 135.1 2.7 1 87 37 123 37 125 0.98 SCAN domain zf-C2H2_4 PF13894.6 24 ZNF263-201 - 683 3.3e-29 99.0 84.3 1 9 1.1e-06 0.0011 19.6 0.5 2 23 379 400 378 401 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF263-201 - 683 3.3e-29 99.0 84.3 2 9 0.00049 0.49 11.4 6.8 1 23 434 456 434 457 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF263-201 - 683 3.3e-29 99.0 84.3 3 9 6e-06 0.0059 17.3 6.9 1 23 462 484 462 485 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF263-201 - 683 3.3e-29 99.0 84.3 4 9 9.9e-06 0.0098 16.7 0.6 1 23 490 512 490 513 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF263-201 - 683 3.3e-29 99.0 84.3 5 9 5.5e-07 0.00054 20.6 1.4 1 23 518 540 518 541 0.97 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF263-201 - 683 3.3e-29 99.0 84.3 6 9 0.00024 0.24 12.3 2.1 1 23 575 597 575 598 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF263-201 - 683 3.3e-29 99.0 84.3 7 9 1e-05 0.0099 16.6 1.3 1 23 603 625 603 626 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF263-201 - 683 3.3e-29 99.0 84.3 8 9 0.00064 0.64 11.0 3.4 1 23 631 653 631 654 0.86 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF263-201 - 683 3.3e-29 99.0 84.3 9 9 1.4e-06 0.0014 19.3 1.5 1 23 659 681 659 682 0.97 C2H2-type zinc finger KRAB PF01352.27 42 ZNF263-201 - 683 8.8e-14 50.9 0.0 1 1 1.9e-16 1.9e-13 49.8 0.0 4 42 219 257 218 257 0.97 KRAB box zf-C2H2_11 PF16622.5 29 ZNF263-201 - 683 2.3e-09 36.9 60.0 1 9 0.0019 1.9 8.3 0.9 7 26 380 399 378 400 0.94 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF263-201 - 683 2.3e-09 36.9 60.0 2 9 8.8e-07 0.00087 19.0 2.7 4 24 433 453 431 455 0.92 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF263-201 - 683 2.3e-09 36.9 60.0 3 9 9.9e-05 0.099 12.4 3.9 5 24 462 481 459 483 0.93 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF263-201 - 683 2.3e-09 36.9 60.0 4 9 0.0013 1.3 8.8 0.1 5 26 490 511 487 512 0.93 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF263-201 - 683 2.3e-09 36.9 60.0 5 9 0.088 87 3.0 0.1 5 15 518 528 516 536 0.83 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF263-201 - 683 2.3e-09 36.9 60.0 6 9 0.12 1.2e+02 2.5 1.6 7 24 577 594 575 596 0.88 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF263-201 - 683 2.3e-09 36.9 60.0 7 9 9.6e-05 0.095 12.5 0.5 5 26 603 624 600 625 0.94 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF263-201 - 683 2.3e-09 36.9 60.0 8 9 0.27 2.7e+02 1.4 0.5 7 24 633 650 630 652 0.76 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF263-201 - 683 2.3e-09 36.9 60.0 9 9 0.057 57 3.6 0.6 5 18 659 672 657 679 0.78 zinc-finger C2H2-type Zn-ribbon_8 PF09723.10 40 ZNF263-201 - 683 1.3e-07 31.6 41.2 1 7 0.17 1.7e+02 2.4 0.1 27 35 377 386 367 406 0.73 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF263-201 - 683 1.3e-07 31.6 41.2 2 7 0.52 5.2e+02 0.9 7.5 7 34 435 469 433 480 0.89 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF263-201 - 683 1.3e-07 31.6 41.2 3 7 0.00047 0.47 10.6 6.1 6 34 462 497 461 501 0.86 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF263-201 - 683 1.3e-07 31.6 41.2 4 7 1.2e-06 0.0011 19.0 3.2 6 38 490 529 489 531 0.92 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF263-201 - 683 1.3e-07 31.6 41.2 5 7 0.072 72 3.6 0.1 6 16 575 585 574 599 0.80 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF263-201 - 683 1.3e-07 31.6 41.2 6 7 2.1e-05 0.021 14.9 1.4 6 34 603 638 602 644 0.91 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF263-201 - 683 1.3e-07 31.6 41.2 7 7 0.0029 2.9 8.1 0.2 6 19 659 672 658 681 0.78 Zinc ribbon domain # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF263-201.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF263-201.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF263-201.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF263-201.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF263-201.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:02:43 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZNF263-202 - 331 3.5e-60 197.9 87.9 1 12 0.00021 0.14 12.6 0.3 11 26 22 37 18 37 0.86 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF263-202 - 331 3.5e-60 197.9 87.9 2 12 0.31 2.1e+02 2.6 0.0 1 10 40 49 40 60 0.85 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF263-202 - 331 3.5e-60 197.9 87.9 3 12 0.0054 3.7 8.1 1.1 9 25 76 92 72 93 0.90 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF263-202 - 331 3.5e-60 197.9 87.9 4 12 1.6e-10 1.1e-07 31.9 6.1 1 25 96 120 96 121 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF263-202 - 331 3.5e-60 197.9 87.9 5 12 1e-10 7.2e-08 32.5 3.1 1 26 124 149 124 149 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF263-202 - 331 3.5e-60 197.9 87.9 6 12 3.6e-13 2.5e-10 40.3 0.6 1 25 152 176 152 177 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF263-202 - 331 3.5e-60 197.9 87.9 7 12 0.14 99 3.6 0.3 1 17 180 199 180 202 0.76 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF263-202 - 331 3.5e-60 197.9 87.9 8 12 0.0014 0.97 10.0 0.3 9 25 216 233 214 234 0.84 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF263-202 - 331 3.5e-60 197.9 87.9 9 12 2.8e-11 1.9e-08 34.3 4.3 1 26 237 262 237 262 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF263-202 - 331 3.5e-60 197.9 87.9 10 12 6.4e-12 4.4e-09 36.4 1.3 1 26 265 290 265 290 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF263-202 - 331 3.5e-60 197.9 87.9 11 12 5.4e-11 3.7e-08 33.4 0.6 4 25 296 317 293 318 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF263-202 - 331 3.5e-60 197.9 87.9 12 12 0.076 52 4.5 0.7 2 11 322 331 321 331 0.92 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZNF263-202 - 331 9.7e-53 173.8 99.1 1 9 6.8e-09 4.7e-06 26.8 1.4 3 23 28 48 26 48 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF263-202 - 331 9.7e-53 173.8 99.1 2 9 1.7e-07 0.00012 22.4 8.5 1 23 82 104 82 104 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF263-202 - 331 9.7e-53 173.8 99.1 3 9 9.1e-07 0.00063 20.1 8.7 1 23 110 132 110 132 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF263-202 - 331 9.7e-53 173.8 99.1 4 9 2.1e-09 1.5e-06 28.3 0.6 1 23 138 160 138 160 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF263-202 - 331 9.7e-53 173.8 99.1 5 9 1.5e-10 1.1e-07 31.9 1.8 1 23 166 188 166 188 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF263-202 - 331 9.7e-53 173.8 99.1 6 9 2.1e-07 0.00015 22.1 3.2 1 23 223 245 223 245 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF263-202 - 331 9.7e-53 173.8 99.1 7 9 7.5e-09 5.1e-06 26.6 2.3 1 23 251 273 251 273 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF263-202 - 331 9.7e-53 173.8 99.1 8 9 9.8e-07 0.00068 20.0 5.0 1 23 279 301 279 301 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF263-202 - 331 9.7e-53 173.8 99.1 9 9 2.2e-09 1.5e-06 28.3 1.9 1 23 307 329 307 329 0.99 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZNF263-202 - 331 9.2e-32 107.0 87.3 1 10 6.7e-07 0.00046 20.8 0.5 2 23 27 48 26 49 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF263-202 - 331 9.2e-32 107.0 87.3 2 10 0.00029 0.2 12.6 6.8 1 23 82 104 82 105 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF263-202 - 331 9.2e-32 107.0 87.3 3 10 3.5e-06 0.0024 18.5 6.9 1 23 110 132 110 133 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF263-202 - 331 9.2e-32 107.0 87.3 4 10 5.9e-06 0.004 17.9 0.6 1 23 138 160 138 161 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF263-202 - 331 9.2e-32 107.0 87.3 5 10 3.2e-07 0.00022 21.8 1.4 1 23 166 188 166 189 0.97 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF263-202 - 331 9.2e-32 107.0 87.3 6 10 7.2 5e+03 -1.1 0.0 5 19 198 213 197 216 0.77 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF263-202 - 331 9.2e-32 107.0 87.3 7 10 0.00014 0.1 13.5 2.1 1 23 223 245 223 246 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF263-202 - 331 9.2e-32 107.0 87.3 8 10 5.9e-06 0.0041 17.8 1.3 1 23 251 273 251 274 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF263-202 - 331 9.2e-32 107.0 87.3 9 10 0.00038 0.26 12.2 3.4 1 23 279 301 279 302 0.86 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF263-202 - 331 9.2e-32 107.0 87.3 10 10 8.3e-07 0.00057 20.5 1.5 1 23 307 329 307 330 0.97 C2H2-type zinc finger zf-C2H2_11 PF16622.5 29 ZNF263-202 - 331 6.9e-12 44.9 62.3 1 9 0.0012 0.81 9.5 0.9 7 26 28 47 26 48 0.94 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF263-202 - 331 6.9e-12 44.9 62.3 2 9 1e-06 0.0007 19.3 3.7 4 24 81 101 79 104 0.91 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF263-202 - 331 6.9e-12 44.9 62.3 3 9 0.00012 0.082 12.7 5.0 5 24 110 129 107 132 0.92 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF263-202 - 331 6.9e-12 44.9 62.3 4 9 0.00081 0.56 10.0 0.1 5 26 138 159 135 160 0.93 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF263-202 - 331 6.9e-12 44.9 62.3 5 9 0.055 38 4.2 0.1 5 15 166 176 164 184 0.83 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF263-202 - 331 6.9e-12 44.9 62.3 6 9 0.077 53 3.7 1.6 7 24 225 242 223 244 0.88 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF263-202 - 331 6.9e-12 44.9 62.3 7 9 5.8e-05 0.04 13.7 0.5 5 26 251 272 248 273 0.94 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF263-202 - 331 6.9e-12 44.9 62.3 8 9 0.17 1.2e+02 2.6 0.5 7 24 281 298 278 300 0.76 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF263-202 - 331 6.9e-12 44.9 62.3 9 9 0.036 25 4.7 0.6 5 18 307 320 305 327 0.78 zinc-finger C2H2-type Zn-ribbon_8 PF09723.10 40 ZNF263-202 - 331 2.1e-09 37.3 43.7 1 8 0.1 72 3.6 0.1 27 35 25 34 15 54 0.73 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF263-202 - 331 2.1e-09 37.3 43.7 2 8 0.34 2.3e+02 2.0 7.7 7 34 83 117 81 128 0.89 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF263-202 - 331 2.1e-09 37.3 43.7 3 8 0.00032 0.22 11.6 6.4 6 34 110 145 109 149 0.86 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF263-202 - 331 2.1e-09 37.3 43.7 4 8 8.1e-07 0.00056 20.0 3.6 6 38 138 177 137 179 0.92 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF263-202 - 331 2.1e-09 37.3 43.7 5 8 0.0024 1.6 8.9 0.7 6 17 166 177 165 203 0.77 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF263-202 - 331 2.1e-09 37.3 43.7 6 8 0.045 31 4.8 0.1 6 16 223 233 222 247 0.79 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF263-202 - 331 2.1e-09 37.3 43.7 7 8 1.5e-05 0.01 15.9 1.7 6 34 251 286 250 291 0.91 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF263-202 - 331 2.1e-09 37.3 43.7 8 8 0.0018 1.2 9.3 0.2 6 19 307 320 306 329 0.78 Zinc ribbon domain zf-C2H2_6 PF13912.6 27 ZNF263-202 - 331 4.8e-07 29.6 75.5 1 9 0.0071 4.9 7.3 0.1 2 22 26 46 25 51 0.80 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF263-202 - 331 4.8e-07 29.6 75.5 2 9 0.12 82 3.4 6.1 1 24 81 104 81 107 0.92 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF263-202 - 331 4.8e-07 29.6 75.5 3 9 0.39 2.7e+02 1.7 6.1 2 24 110 132 110 135 0.83 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF263-202 - 331 4.8e-07 29.6 75.5 4 9 0.035 24 5.1 0.1 2 11 138 147 138 158 0.90 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF263-202 - 331 4.8e-07 29.6 75.5 5 9 6.9e-05 0.048 13.7 1.6 2 26 166 190 166 191 0.84 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF263-202 - 331 4.8e-07 29.6 75.5 6 9 0.00016 0.11 12.5 1.7 2 24 223 245 222 248 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF263-202 - 331 4.8e-07 29.6 75.5 7 9 0.014 9.4 6.4 0.6 2 20 251 269 251 275 0.80 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF263-202 - 331 4.8e-07 29.6 75.5 8 9 0.13 88 3.3 3.1 2 12 279 289 279 303 0.86 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF263-202 - 331 4.8e-07 29.6 75.5 9 9 1.2e-05 0.0083 16.1 2.2 2 24 307 329 307 331 0.97 C2H2-type zinc finger # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF263-202.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF263-202.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF263-202.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF263-202.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF263-202.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:02:44 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF263-203.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF263-203.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF263-203.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF263-203.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF263-203.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:02:44 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- SCAN PF02023.17 90 ZNF263-204 - 149 1.9e-41 139.8 2.7 1 1 3e-45 2.7e-41 139.3 2.7 1 87 37 123 37 125 0.98 SCAN domain # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF263-204.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF263-204.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF263-204.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF263-204.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF263-204.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:02:44 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- SCAN PF02023.17 90 ZNF263-205 - 226 4.8e-41 138.5 2.7 1 1 4e-45 7.2e-41 137.9 2.7 1 87 37 123 37 126 0.98 SCAN domain # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF263-205.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF263-205.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF263-205.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF263-205.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF263-205.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:02:45 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF263-206.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF263-206.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF263-206.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF263-206.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF263-206.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:02:45 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZNF263-207 - 96 4.9e-30 102.6 27.2 1 4 8.3e-12 2.9e-09 36.9 4.3 1 26 2 27 2 27 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF263-207 - 96 4.9e-30 102.6 27.2 2 4 1.9e-12 6.7e-10 38.9 1.3 1 26 30 55 30 55 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF263-207 - 96 4.9e-30 102.6 27.2 3 4 1.6e-11 5.8e-09 36.0 0.6 4 25 61 82 58 83 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF263-207 - 96 4.9e-30 102.6 27.2 4 4 0.032 11 6.6 0.7 2 11 87 96 86 96 0.92 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZNF263-207 - 96 3.9e-19 68.0 36.1 1 4 0.2 71 4.1 3.8 15 23 2 10 1 10 0.95 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF263-207 - 96 3.9e-19 68.0 36.1 2 4 2.3e-09 8.2e-07 29.1 2.3 1 23 16 38 16 38 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF263-207 - 96 3.9e-19 68.0 36.1 3 4 3.1e-07 0.00011 22.5 5.0 1 23 44 66 44 66 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF263-207 - 96 3.9e-19 68.0 36.1 4 4 6.8e-10 2.4e-07 30.8 1.9 1 23 72 94 72 94 0.99 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZNF263-207 - 96 8.9e-11 41.7 29.8 1 4 3 1e+03 1.0 1.6 15 23 2 10 1 11 0.86 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF263-207 - 96 8.9e-11 41.7 29.8 2 4 1.8e-06 0.00063 20.4 1.3 1 23 16 38 16 39 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF263-207 - 96 8.9e-11 41.7 29.8 3 4 0.00012 0.041 14.7 3.4 1 23 44 66 44 67 0.86 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF263-207 - 96 8.9e-11 41.7 29.8 4 4 2.5e-07 8.8e-05 23.0 1.5 1 23 72 94 72 95 0.97 C2H2-type zinc finger # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF263-207.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF263-207.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF263-207.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF263-207.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF263-207.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:02:46 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- SCAN PF02023.17 90 ZNF263-208 - 87 2.4e-21 75.3 1.9 1 1 3.3e-25 3e-21 75.0 1.9 39 88 2 51 1 53 0.96 SCAN domain # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF263-208.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF263-208.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF263-208.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF263-208.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF263-208.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:02:46 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZNF264-201 - 627 8.3e-100 323.2 89.4 1 14 0.001 0.72 10.4 0.5 12 25 200 213 183 214 0.85 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF264-201 - 627 8.3e-100 323.2 89.4 2 14 2.4e-08 1.6e-05 25.1 0.4 5 24 221 240 218 242 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF264-201 - 627 8.3e-100 323.2 89.4 3 14 4.3e-09 2.9e-06 27.4 1.1 2 25 246 269 245 270 0.89 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF264-201 - 627 8.3e-100 323.2 89.4 4 14 1e-10 6.9e-08 32.6 1.9 2 26 274 298 273 298 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF264-201 - 627 8.3e-100 323.2 89.4 5 14 4.4e-07 0.0003 21.1 1.1 1 26 301 326 301 326 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF264-201 - 627 8.3e-100 323.2 89.4 6 14 1.4e-08 9.6e-06 25.8 0.8 3 26 331 354 329 354 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF264-201 - 627 8.3e-100 323.2 89.4 7 14 3.1e-11 2.1e-08 34.2 0.2 2 24 358 380 357 382 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF264-201 - 627 8.3e-100 323.2 89.4 8 14 1.1e-08 7.4e-06 26.2 1.1 4 26 388 410 385 410 0.87 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF264-201 - 627 8.3e-100 323.2 89.4 9 14 2.4e-12 1.7e-09 37.7 1.9 2 26 414 438 413 438 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF264-201 - 627 8.3e-100 323.2 89.4 10 14 1.2e-09 8.3e-07 29.2 1.2 5 26 445 466 442 466 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF264-201 - 627 8.3e-100 323.2 89.4 11 14 3.1e-11 2.2e-08 34.2 0.2 1 26 469 494 469 494 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF264-201 - 627 8.3e-100 323.2 89.4 12 14 1.4e-10 9.5e-08 32.1 0.5 1 24 497 520 497 520 0.97 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF264-201 - 627 8.3e-100 323.2 89.4 13 14 1.3e-11 9e-09 35.4 0.1 1 25 525 549 525 550 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF264-201 - 627 8.3e-100 323.2 89.4 14 14 0.00099 0.69 10.5 0.1 1 14 553 566 553 570 0.90 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZNF264-201 - 627 2.1e-63 207.4 101.4 1 13 2.3e-06 0.0016 18.8 0.9 1 23 203 225 203 225 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF264-201 - 627 2.1e-63 207.4 101.4 2 13 3.7e-06 0.0026 18.1 3.2 1 23 231 253 231 253 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF264-201 - 627 2.1e-63 207.4 101.4 3 13 6.9e-09 4.7e-06 26.7 0.8 1 23 259 281 259 281 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF264-201 - 627 2.1e-63 207.4 101.4 4 13 1.5e-07 0.0001 22.5 3.4 1 23 287 309 287 309 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF264-201 - 627 2.1e-63 207.4 101.4 5 13 4.8e-05 0.033 14.6 1.0 1 23 315 337 315 337 0.95 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF264-201 - 627 2.1e-63 207.4 101.4 6 13 4.2e-08 2.9e-05 24.3 1.9 1 23 343 365 343 365 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF264-201 - 627 2.1e-63 207.4 101.4 7 13 0.00057 0.39 11.3 0.1 1 23 371 393 371 393 0.93 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF264-201 - 627 2.1e-63 207.4 101.4 8 13 3.8e-08 2.6e-05 24.4 2.3 1 23 399 421 399 421 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF264-201 - 627 2.1e-63 207.4 101.4 9 13 1.1e-05 0.0079 16.6 3.7 1 23 427 449 427 449 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF264-201 - 627 2.1e-63 207.4 101.4 10 13 1.5e-07 0.0001 22.6 0.5 1 23 455 477 455 477 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF264-201 - 627 2.1e-63 207.4 101.4 11 13 4.1e-08 2.8e-05 24.3 0.4 1 23 483 505 483 505 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF264-201 - 627 2.1e-63 207.4 101.4 12 13 1.2e-05 0.0083 16.5 0.3 1 23 511 533 511 533 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF264-201 - 627 2.1e-63 207.4 101.4 13 13 9.4e-10 6.5e-07 29.5 1.6 1 23 539 561 539 561 0.99 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZNF264-201 - 627 8.5e-32 107.1 98.3 1 13 1.5e-05 0.01 16.6 1.2 1 23 203 225 203 226 0.80 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF264-201 - 627 8.5e-32 107.1 98.3 2 13 6.8e-05 0.047 14.5 1.9 1 21 231 252 231 254 0.78 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF264-201 - 627 8.5e-32 107.1 98.3 3 13 7.8e-05 0.054 14.4 0.6 1 23 259 281 259 282 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF264-201 - 627 8.5e-32 107.1 98.3 4 13 0.028 19 6.4 1.4 1 19 287 305 287 309 0.77 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF264-201 - 627 8.5e-32 107.1 98.3 5 13 0.0006 0.41 11.6 1.2 1 23 315 337 315 338 0.91 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF264-201 - 627 8.5e-32 107.1 98.3 6 13 0.027 19 6.4 1.8 1 23 343 365 343 366 0.78 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF264-201 - 627 8.5e-32 107.1 98.3 7 13 6.6e-05 0.046 14.6 0.3 1 23 371 393 371 394 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF264-201 - 627 8.5e-32 107.1 98.3 8 13 0.00043 0.3 12.0 1.8 1 23 399 421 399 422 0.90 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF264-201 - 627 8.5e-32 107.1 98.3 9 13 0.0039 2.7 9.1 3.7 1 23 427 449 427 450 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF264-201 - 627 8.5e-32 107.1 98.3 10 13 2.2e-06 0.0015 19.2 0.5 1 23 455 477 455 478 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF264-201 - 627 8.5e-32 107.1 98.3 11 13 3.4e-05 0.024 15.5 0.3 1 23 483 505 483 506 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF264-201 - 627 8.5e-32 107.1 98.3 12 13 0.00092 0.63 11.0 0.6 1 23 511 533 511 534 0.90 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF264-201 - 627 8.5e-32 107.1 98.3 13 13 2.8e-06 0.0019 18.9 1.4 1 23 539 561 539 562 0.96 C2H2-type zinc finger KRAB PF01352.27 42 ZNF264-201 - 627 3.6e-23 80.9 0.3 1 1 8.9e-26 6.1e-23 80.2 0.3 1 42 13 54 13 54 0.99 KRAB box zf-C2H2_jaz PF12171.8 27 ZNF264-201 - 627 1e-17 63.9 51.7 1 12 0.0016 1.1 9.6 0.7 2 22 203 223 202 223 0.95 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF264-201 - 627 1e-17 63.9 51.7 2 12 0.00035 0.24 11.7 0.1 2 20 231 249 230 249 0.95 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF264-201 - 627 1e-17 63.9 51.7 3 12 0.0026 1.8 9.0 0.2 2 22 259 279 258 279 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF264-201 - 627 1e-17 63.9 51.7 4 12 0.11 78 3.7 0.4 2 20 287 305 286 307 0.90 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF264-201 - 627 1e-17 63.9 51.7 5 12 0.015 11 6.5 0.5 2 18 343 359 342 365 0.79 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF264-201 - 627 1e-17 63.9 51.7 6 12 0.09 62 4.0 0.1 2 20 371 389 370 390 0.82 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF264-201 - 627 1e-17 63.9 51.7 7 12 0.00065 0.45 10.9 0.3 2 22 399 419 398 419 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF264-201 - 627 1e-17 63.9 51.7 8 12 1 7e+02 0.7 0.8 2 20 427 445 426 447 0.75 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF264-201 - 627 1e-17 63.9 51.7 9 12 6e-05 0.041 14.2 0.1 2 22 455 475 454 475 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF264-201 - 627 1e-17 63.9 51.7 10 12 0.0039 2.7 8.4 0.0 2 22 483 503 482 503 0.91 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF264-201 - 627 1e-17 63.9 51.7 11 12 0.086 59 4.1 0.1 2 11 511 520 510 520 0.91 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF264-201 - 627 1e-17 63.9 51.7 12 12 0.00033 0.23 11.8 0.0 2 22 539 559 538 559 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_6 PF13912.6 27 ZNF264-201 - 627 1.3e-16 60.1 91.8 1 13 0.00017 0.12 12.4 1.2 2 13 203 214 202 227 0.78 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF264-201 - 627 1.3e-16 60.1 91.8 2 13 0.00083 0.57 10.2 0.8 2 11 231 240 231 242 0.96 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF264-201 - 627 1.3e-16 60.1 91.8 3 13 0.0083 5.7 7.1 0.4 2 13 259 270 259 282 0.87 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF264-201 - 627 1.3e-16 60.1 91.8 4 13 0.0057 3.9 7.6 1.1 2 11 287 296 287 298 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF264-201 - 627 1.3e-16 60.1 91.8 5 13 0.018 13 5.9 0.6 2 12 315 325 314 325 0.91 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF264-201 - 627 1.3e-16 60.1 91.8 6 13 0.0041 2.8 8.0 1.8 2 24 343 365 343 368 0.85 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF264-201 - 627 1.3e-16 60.1 91.8 7 13 0.00036 0.25 11.4 0.3 2 11 371 380 371 389 0.92 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF264-201 - 627 1.3e-16 60.1 91.8 8 13 0.056 39 4.4 0.8 2 12 399 409 399 410 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF264-201 - 627 1.3e-16 60.1 91.8 9 13 0.015 11 6.2 2.3 2 12 427 437 427 450 0.90 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF264-201 - 627 1.3e-16 60.1 91.8 10 13 0.00026 0.18 11.8 0.4 2 20 455 473 455 477 0.86 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF264-201 - 627 1.3e-16 60.1 91.8 11 13 9.9e-05 0.068 13.2 0.4 2 25 483 506 483 508 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF264-201 - 627 1.3e-16 60.1 91.8 12 13 0.011 7.8 6.6 0.7 2 11 511 520 511 530 0.90 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF264-201 - 627 1.3e-16 60.1 91.8 13 13 0.00011 0.077 13.0 2.5 2 24 539 561 539 564 0.92 C2H2-type zinc finger XPA_N PF01286.18 32 ZNF264-201 - 627 1e-11 44.7 59.7 1 13 0.092 64 3.7 0.2 3 13 204 214 203 219 0.83 XPA protein N-terminal XPA_N PF01286.18 32 ZNF264-201 - 627 1e-11 44.7 59.7 2 13 0.0043 3 8.0 0.1 3 14 232 243 230 249 0.88 XPA protein N-terminal XPA_N PF01286.18 32 ZNF264-201 - 627 1e-11 44.7 59.7 3 13 0.0017 1.2 9.3 0.1 3 18 260 276 258 278 0.81 XPA protein N-terminal XPA_N PF01286.18 32 ZNF264-201 - 627 1e-11 44.7 59.7 4 13 0.02 14 5.9 0.2 3 12 288 297 286 298 0.89 XPA protein N-terminal XPA_N PF01286.18 32 ZNF264-201 - 627 1e-11 44.7 59.7 5 13 0.54 3.7e+02 1.3 0.2 3 11 316 324 315 326 0.86 XPA protein N-terminal XPA_N PF01286.18 32 ZNF264-201 - 627 1e-11 44.7 59.7 6 13 0.0048 3.3 7.8 0.1 3 17 344 359 342 361 0.82 XPA protein N-terminal XPA_N PF01286.18 32 ZNF264-201 - 627 1e-11 44.7 59.7 7 13 0.0099 6.8 6.8 0.1 3 14 372 383 370 387 0.92 XPA protein N-terminal XPA_N PF01286.18 32 ZNF264-201 - 627 1e-11 44.7 59.7 8 13 0.0031 2.1 8.5 0.1 3 16 400 414 398 417 0.78 XPA protein N-terminal XPA_N PF01286.18 32 ZNF264-201 - 627 1e-11 44.7 59.7 9 13 0.14 94 3.2 1.7 3 12 428 437 427 439 0.89 XPA protein N-terminal XPA_N PF01286.18 32 ZNF264-201 - 627 1e-11 44.7 59.7 10 13 0.012 8.4 6.5 0.2 3 12 456 465 454 475 0.88 XPA protein N-terminal XPA_N PF01286.18 32 ZNF264-201 - 627 1e-11 44.7 59.7 11 13 0.023 16 5.6 0.1 3 12 484 493 482 494 0.89 XPA protein N-terminal XPA_N PF01286.18 32 ZNF264-201 - 627 1e-11 44.7 59.7 12 13 0.015 11 6.2 0.7 3 14 512 523 510 524 0.88 XPA protein N-terminal XPA_N PF01286.18 32 ZNF264-201 - 627 1e-11 44.7 59.7 13 13 0.0067 4.6 7.4 0.2 3 14 540 551 538 555 0.90 XPA protein N-terminal Zn-ribbon_8 PF09723.10 40 ZNF264-201 - 627 4.5e-11 42.7 74.1 1 13 0.0046 3.2 8.0 0.1 6 18 203 215 202 227 0.83 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF264-201 - 627 4.5e-11 42.7 74.1 2 13 0.0007 0.48 10.6 4.8 6 38 231 270 229 272 0.83 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF264-201 - 627 4.5e-11 42.7 74.1 3 13 0.00013 0.087 13.0 4.4 6 35 259 295 258 300 0.90 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF264-201 - 627 4.5e-11 42.7 74.1 4 13 0.00095 0.66 10.2 4.6 6 34 287 322 285 326 0.85 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF264-201 - 627 4.5e-11 42.7 74.1 5 13 0.036 25 5.1 0.4 6 16 315 325 313 332 0.87 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF264-201 - 627 4.5e-11 42.7 74.1 6 13 0.0025 1.7 8.8 5.6 6 34 343 378 342 382 0.80 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF264-201 - 627 4.5e-11 42.7 74.1 7 13 0.016 11 6.2 0.6 6 15 371 380 369 387 0.90 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF264-201 - 627 4.5e-11 42.7 74.1 8 13 0.0002 0.14 12.3 2.1 6 35 399 435 398 438 0.90 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF264-201 - 627 4.5e-11 42.7 74.1 9 13 0.0023 1.6 8.9 5.3 6 35 427 463 426 467 0.87 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF264-201 - 627 4.5e-11 42.7 74.1 10 13 0.00012 0.086 13.0 3.9 6 39 455 495 454 496 0.84 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF264-201 - 627 4.5e-11 42.7 74.1 11 13 0.0053 3.7 7.8 6.0 6 34 483 518 482 521 0.76 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF264-201 - 627 4.5e-11 42.7 74.1 12 13 0.0049 3.4 7.9 5.6 6 38 511 550 510 551 0.85 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF264-201 - 627 4.5e-11 42.7 74.1 13 13 0.0038 2.6 8.2 0.3 6 20 539 553 537 564 0.80 Zinc ribbon domain zf-C2H2_11 PF16622.5 29 ZNF264-201 - 627 8e-09 35.1 59.6 1 13 0.086 59 3.5 0.0 2 14 200 212 199 224 0.82 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF264-201 - 627 8e-09 35.1 59.6 2 13 0.14 97 2.8 0.6 6 24 232 250 230 253 0.65 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF264-201 - 627 8e-09 35.1 59.6 3 13 0.081 56 3.6 0.2 6 26 260 280 258 281 0.86 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF264-201 - 627 8e-09 35.1 59.6 4 13 0.044 31 4.5 0.1 5 15 287 297 284 305 0.90 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF264-201 - 627 8e-09 35.1 59.6 5 13 0.21 1.4e+02 2.3 0.2 4 14 314 324 312 337 0.73 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF264-201 - 627 8e-09 35.1 59.6 6 13 0.2 1.4e+02 2.4 0.1 5 14 343 352 340 357 0.82 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF264-201 - 627 8e-09 35.1 59.6 7 13 0.52 3.6e+02 1.0 0.1 6 25 372 391 370 393 0.76 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF264-201 - 627 8e-09 35.1 59.6 8 13 0.00062 0.43 10.4 0.5 6 26 400 420 397 421 0.93 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF264-201 - 627 8e-09 35.1 59.6 9 13 0.93 6.4e+02 0.2 1.7 7 15 429 437 427 446 0.86 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF264-201 - 627 8e-09 35.1 59.6 10 13 0.0091 6.2 6.7 0.1 6 26 456 476 453 477 0.91 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF264-201 - 627 8e-09 35.1 59.6 11 13 0.0003 0.21 11.4 0.1 6 26 484 504 481 505 0.93 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF264-201 - 627 8e-09 35.1 59.6 12 13 0.0032 2.2 8.1 0.2 6 26 512 532 509 533 0.92 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF264-201 - 627 8e-09 35.1 59.6 13 13 0.00019 0.13 12.0 0.9 5 26 539 560 536 561 0.93 zinc-finger C2H2-type zf_UBZ PF18439.1 32 ZNF264-201 - 627 1.5e-07 30.8 57.9 1 13 0.0037 2.6 7.7 0.1 2 13 202 213 201 222 0.82 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF264-201 - 627 1.5e-07 30.8 57.9 2 13 0.0097 6.7 6.4 0.6 3 20 231 249 229 250 0.81 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF264-201 - 627 1.5e-07 30.8 57.9 3 13 0.16 1.1e+02 2.5 0.1 3 14 259 270 257 278 0.77 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF264-201 - 627 1.5e-07 30.8 57.9 4 13 0.071 49 3.6 0.2 3 12 287 296 285 300 0.85 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF264-201 - 627 1.5e-07 30.8 57.9 5 13 0.019 13 5.5 0.2 2 12 314 324 313 327 0.87 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF264-201 - 627 1.5e-07 30.8 57.9 6 13 0.045 31 4.3 0.1 3 14 343 354 341 361 0.86 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF264-201 - 627 1.5e-07 30.8 57.9 7 13 0.00087 0.6 9.8 0.1 3 17 371 385 369 389 0.81 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF264-201 - 627 1.5e-07 30.8 57.9 8 13 0.18 1.3e+02 2.3 0.1 3 13 399 409 397 414 0.84 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF264-201 - 627 1.5e-07 30.8 57.9 9 13 0.014 9.5 5.9 0.1 3 12 427 436 425 438 0.86 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF264-201 - 627 1.5e-07 30.8 57.9 10 13 0.034 23 4.7 0.1 3 13 455 465 453 473 0.83 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF264-201 - 627 1.5e-07 30.8 57.9 11 13 0.45 3.1e+02 1.1 0.2 3 12 483 492 481 494 0.86 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF264-201 - 627 1.5e-07 30.8 57.9 12 13 0.79 5.4e+02 0.3 1.7 3 12 511 520 509 521 0.88 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF264-201 - 627 1.5e-07 30.8 57.9 13 13 0.00036 0.25 11.0 0.1 3 21 539 558 537 558 0.92 Ubiquitin-Binding Zinc Finger # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF264-201.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF264-201.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF264-201.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF264-201.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF264-201.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:02:46 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZNF264-202 - 627 8.3e-100 323.2 89.4 1 14 0.001 0.72 10.4 0.5 12 25 200 213 183 214 0.85 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF264-202 - 627 8.3e-100 323.2 89.4 2 14 2.4e-08 1.6e-05 25.1 0.4 5 24 221 240 218 242 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF264-202 - 627 8.3e-100 323.2 89.4 3 14 4.3e-09 2.9e-06 27.4 1.1 2 25 246 269 245 270 0.89 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF264-202 - 627 8.3e-100 323.2 89.4 4 14 1e-10 6.9e-08 32.6 1.9 2 26 274 298 273 298 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF264-202 - 627 8.3e-100 323.2 89.4 5 14 4.4e-07 0.0003 21.1 1.1 1 26 301 326 301 326 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF264-202 - 627 8.3e-100 323.2 89.4 6 14 1.4e-08 9.6e-06 25.8 0.8 3 26 331 354 329 354 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF264-202 - 627 8.3e-100 323.2 89.4 7 14 3.1e-11 2.1e-08 34.2 0.2 2 24 358 380 357 382 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF264-202 - 627 8.3e-100 323.2 89.4 8 14 1.1e-08 7.4e-06 26.2 1.1 4 26 388 410 385 410 0.87 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF264-202 - 627 8.3e-100 323.2 89.4 9 14 2.4e-12 1.7e-09 37.7 1.9 2 26 414 438 413 438 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF264-202 - 627 8.3e-100 323.2 89.4 10 14 1.2e-09 8.3e-07 29.2 1.2 5 26 445 466 442 466 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF264-202 - 627 8.3e-100 323.2 89.4 11 14 3.1e-11 2.2e-08 34.2 0.2 1 26 469 494 469 494 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF264-202 - 627 8.3e-100 323.2 89.4 12 14 1.4e-10 9.5e-08 32.1 0.5 1 24 497 520 497 520 0.97 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF264-202 - 627 8.3e-100 323.2 89.4 13 14 1.3e-11 9e-09 35.4 0.1 1 25 525 549 525 550 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF264-202 - 627 8.3e-100 323.2 89.4 14 14 0.00099 0.69 10.5 0.1 1 14 553 566 553 570 0.90 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZNF264-202 - 627 2.1e-63 207.4 101.4 1 13 2.3e-06 0.0016 18.8 0.9 1 23 203 225 203 225 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF264-202 - 627 2.1e-63 207.4 101.4 2 13 3.7e-06 0.0026 18.1 3.2 1 23 231 253 231 253 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF264-202 - 627 2.1e-63 207.4 101.4 3 13 6.9e-09 4.7e-06 26.7 0.8 1 23 259 281 259 281 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF264-202 - 627 2.1e-63 207.4 101.4 4 13 1.5e-07 0.0001 22.5 3.4 1 23 287 309 287 309 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF264-202 - 627 2.1e-63 207.4 101.4 5 13 4.8e-05 0.033 14.6 1.0 1 23 315 337 315 337 0.95 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF264-202 - 627 2.1e-63 207.4 101.4 6 13 4.2e-08 2.9e-05 24.3 1.9 1 23 343 365 343 365 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF264-202 - 627 2.1e-63 207.4 101.4 7 13 0.00057 0.39 11.3 0.1 1 23 371 393 371 393 0.93 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF264-202 - 627 2.1e-63 207.4 101.4 8 13 3.8e-08 2.6e-05 24.4 2.3 1 23 399 421 399 421 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF264-202 - 627 2.1e-63 207.4 101.4 9 13 1.1e-05 0.0079 16.6 3.7 1 23 427 449 427 449 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF264-202 - 627 2.1e-63 207.4 101.4 10 13 1.5e-07 0.0001 22.6 0.5 1 23 455 477 455 477 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF264-202 - 627 2.1e-63 207.4 101.4 11 13 4.1e-08 2.8e-05 24.3 0.4 1 23 483 505 483 505 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF264-202 - 627 2.1e-63 207.4 101.4 12 13 1.2e-05 0.0083 16.5 0.3 1 23 511 533 511 533 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF264-202 - 627 2.1e-63 207.4 101.4 13 13 9.4e-10 6.5e-07 29.5 1.6 1 23 539 561 539 561 0.99 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZNF264-202 - 627 8.5e-32 107.1 98.3 1 13 1.5e-05 0.01 16.6 1.2 1 23 203 225 203 226 0.80 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF264-202 - 627 8.5e-32 107.1 98.3 2 13 6.8e-05 0.047 14.5 1.9 1 21 231 252 231 254 0.78 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF264-202 - 627 8.5e-32 107.1 98.3 3 13 7.8e-05 0.054 14.4 0.6 1 23 259 281 259 282 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF264-202 - 627 8.5e-32 107.1 98.3 4 13 0.028 19 6.4 1.4 1 19 287 305 287 309 0.77 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF264-202 - 627 8.5e-32 107.1 98.3 5 13 0.0006 0.41 11.6 1.2 1 23 315 337 315 338 0.91 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF264-202 - 627 8.5e-32 107.1 98.3 6 13 0.027 19 6.4 1.8 1 23 343 365 343 366 0.78 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF264-202 - 627 8.5e-32 107.1 98.3 7 13 6.6e-05 0.046 14.6 0.3 1 23 371 393 371 394 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF264-202 - 627 8.5e-32 107.1 98.3 8 13 0.00043 0.3 12.0 1.8 1 23 399 421 399 422 0.90 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF264-202 - 627 8.5e-32 107.1 98.3 9 13 0.0039 2.7 9.1 3.7 1 23 427 449 427 450 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF264-202 - 627 8.5e-32 107.1 98.3 10 13 2.2e-06 0.0015 19.2 0.5 1 23 455 477 455 478 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF264-202 - 627 8.5e-32 107.1 98.3 11 13 3.4e-05 0.024 15.5 0.3 1 23 483 505 483 506 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF264-202 - 627 8.5e-32 107.1 98.3 12 13 0.00092 0.63 11.0 0.6 1 23 511 533 511 534 0.90 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF264-202 - 627 8.5e-32 107.1 98.3 13 13 2.8e-06 0.0019 18.9 1.4 1 23 539 561 539 562 0.96 C2H2-type zinc finger KRAB PF01352.27 42 ZNF264-202 - 627 3.6e-23 80.9 0.3 1 1 8.9e-26 6.1e-23 80.2 0.3 1 42 13 54 13 54 0.99 KRAB box zf-C2H2_jaz PF12171.8 27 ZNF264-202 - 627 1e-17 63.9 51.7 1 12 0.0016 1.1 9.6 0.7 2 22 203 223 202 223 0.95 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF264-202 - 627 1e-17 63.9 51.7 2 12 0.00035 0.24 11.7 0.1 2 20 231 249 230 249 0.95 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF264-202 - 627 1e-17 63.9 51.7 3 12 0.0026 1.8 9.0 0.2 2 22 259 279 258 279 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF264-202 - 627 1e-17 63.9 51.7 4 12 0.11 78 3.7 0.4 2 20 287 305 286 307 0.90 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF264-202 - 627 1e-17 63.9 51.7 5 12 0.015 11 6.5 0.5 2 18 343 359 342 365 0.79 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF264-202 - 627 1e-17 63.9 51.7 6 12 0.09 62 4.0 0.1 2 20 371 389 370 390 0.82 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF264-202 - 627 1e-17 63.9 51.7 7 12 0.00065 0.45 10.9 0.3 2 22 399 419 398 419 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF264-202 - 627 1e-17 63.9 51.7 8 12 1 7e+02 0.7 0.8 2 20 427 445 426 447 0.75 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF264-202 - 627 1e-17 63.9 51.7 9 12 6e-05 0.041 14.2 0.1 2 22 455 475 454 475 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF264-202 - 627 1e-17 63.9 51.7 10 12 0.0039 2.7 8.4 0.0 2 22 483 503 482 503 0.91 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF264-202 - 627 1e-17 63.9 51.7 11 12 0.086 59 4.1 0.1 2 11 511 520 510 520 0.91 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF264-202 - 627 1e-17 63.9 51.7 12 12 0.00033 0.23 11.8 0.0 2 22 539 559 538 559 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_6 PF13912.6 27 ZNF264-202 - 627 1.3e-16 60.1 91.8 1 13 0.00017 0.12 12.4 1.2 2 13 203 214 202 227 0.78 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF264-202 - 627 1.3e-16 60.1 91.8 2 13 0.00083 0.57 10.2 0.8 2 11 231 240 231 242 0.96 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF264-202 - 627 1.3e-16 60.1 91.8 3 13 0.0083 5.7 7.1 0.4 2 13 259 270 259 282 0.87 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF264-202 - 627 1.3e-16 60.1 91.8 4 13 0.0057 3.9 7.6 1.1 2 11 287 296 287 298 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF264-202 - 627 1.3e-16 60.1 91.8 5 13 0.018 13 5.9 0.6 2 12 315 325 314 325 0.91 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF264-202 - 627 1.3e-16 60.1 91.8 6 13 0.0041 2.8 8.0 1.8 2 24 343 365 343 368 0.85 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF264-202 - 627 1.3e-16 60.1 91.8 7 13 0.00036 0.25 11.4 0.3 2 11 371 380 371 389 0.92 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF264-202 - 627 1.3e-16 60.1 91.8 8 13 0.056 39 4.4 0.8 2 12 399 409 399 410 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF264-202 - 627 1.3e-16 60.1 91.8 9 13 0.015 11 6.2 2.3 2 12 427 437 427 450 0.90 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF264-202 - 627 1.3e-16 60.1 91.8 10 13 0.00026 0.18 11.8 0.4 2 20 455 473 455 477 0.86 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF264-202 - 627 1.3e-16 60.1 91.8 11 13 9.9e-05 0.068 13.2 0.4 2 25 483 506 483 508 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF264-202 - 627 1.3e-16 60.1 91.8 12 13 0.011 7.8 6.6 0.7 2 11 511 520 511 530 0.90 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF264-202 - 627 1.3e-16 60.1 91.8 13 13 0.00011 0.077 13.0 2.5 2 24 539 561 539 564 0.92 C2H2-type zinc finger XPA_N PF01286.18 32 ZNF264-202 - 627 1e-11 44.7 59.7 1 13 0.092 64 3.7 0.2 3 13 204 214 203 219 0.83 XPA protein N-terminal XPA_N PF01286.18 32 ZNF264-202 - 627 1e-11 44.7 59.7 2 13 0.0043 3 8.0 0.1 3 14 232 243 230 249 0.88 XPA protein N-terminal XPA_N PF01286.18 32 ZNF264-202 - 627 1e-11 44.7 59.7 3 13 0.0017 1.2 9.3 0.1 3 18 260 276 258 278 0.81 XPA protein N-terminal XPA_N PF01286.18 32 ZNF264-202 - 627 1e-11 44.7 59.7 4 13 0.02 14 5.9 0.2 3 12 288 297 286 298 0.89 XPA protein N-terminal XPA_N PF01286.18 32 ZNF264-202 - 627 1e-11 44.7 59.7 5 13 0.54 3.7e+02 1.3 0.2 3 11 316 324 315 326 0.86 XPA protein N-terminal XPA_N PF01286.18 32 ZNF264-202 - 627 1e-11 44.7 59.7 6 13 0.0048 3.3 7.8 0.1 3 17 344 359 342 361 0.82 XPA protein N-terminal XPA_N PF01286.18 32 ZNF264-202 - 627 1e-11 44.7 59.7 7 13 0.0099 6.8 6.8 0.1 3 14 372 383 370 387 0.92 XPA protein N-terminal XPA_N PF01286.18 32 ZNF264-202 - 627 1e-11 44.7 59.7 8 13 0.0031 2.1 8.5 0.1 3 16 400 414 398 417 0.78 XPA protein N-terminal XPA_N PF01286.18 32 ZNF264-202 - 627 1e-11 44.7 59.7 9 13 0.14 94 3.2 1.7 3 12 428 437 427 439 0.89 XPA protein N-terminal XPA_N PF01286.18 32 ZNF264-202 - 627 1e-11 44.7 59.7 10 13 0.012 8.4 6.5 0.2 3 12 456 465 454 475 0.88 XPA protein N-terminal XPA_N PF01286.18 32 ZNF264-202 - 627 1e-11 44.7 59.7 11 13 0.023 16 5.6 0.1 3 12 484 493 482 494 0.89 XPA protein N-terminal XPA_N PF01286.18 32 ZNF264-202 - 627 1e-11 44.7 59.7 12 13 0.015 11 6.2 0.7 3 14 512 523 510 524 0.88 XPA protein N-terminal XPA_N PF01286.18 32 ZNF264-202 - 627 1e-11 44.7 59.7 13 13 0.0067 4.6 7.4 0.2 3 14 540 551 538 555 0.90 XPA protein N-terminal Zn-ribbon_8 PF09723.10 40 ZNF264-202 - 627 4.5e-11 42.7 74.1 1 13 0.0046 3.2 8.0 0.1 6 18 203 215 202 227 0.83 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF264-202 - 627 4.5e-11 42.7 74.1 2 13 0.0007 0.48 10.6 4.8 6 38 231 270 229 272 0.83 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF264-202 - 627 4.5e-11 42.7 74.1 3 13 0.00013 0.087 13.0 4.4 6 35 259 295 258 300 0.90 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF264-202 - 627 4.5e-11 42.7 74.1 4 13 0.00095 0.66 10.2 4.6 6 34 287 322 285 326 0.85 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF264-202 - 627 4.5e-11 42.7 74.1 5 13 0.036 25 5.1 0.4 6 16 315 325 313 332 0.87 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF264-202 - 627 4.5e-11 42.7 74.1 6 13 0.0025 1.7 8.8 5.6 6 34 343 378 342 382 0.80 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF264-202 - 627 4.5e-11 42.7 74.1 7 13 0.016 11 6.2 0.6 6 15 371 380 369 387 0.90 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF264-202 - 627 4.5e-11 42.7 74.1 8 13 0.0002 0.14 12.3 2.1 6 35 399 435 398 438 0.90 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF264-202 - 627 4.5e-11 42.7 74.1 9 13 0.0023 1.6 8.9 5.3 6 35 427 463 426 467 0.87 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF264-202 - 627 4.5e-11 42.7 74.1 10 13 0.00012 0.086 13.0 3.9 6 39 455 495 454 496 0.84 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF264-202 - 627 4.5e-11 42.7 74.1 11 13 0.0053 3.7 7.8 6.0 6 34 483 518 482 521 0.76 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF264-202 - 627 4.5e-11 42.7 74.1 12 13 0.0049 3.4 7.9 5.6 6 38 511 550 510 551 0.85 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF264-202 - 627 4.5e-11 42.7 74.1 13 13 0.0038 2.6 8.2 0.3 6 20 539 553 537 564 0.80 Zinc ribbon domain zf-C2H2_11 PF16622.5 29 ZNF264-202 - 627 8e-09 35.1 59.6 1 13 0.086 59 3.5 0.0 2 14 200 212 199 224 0.82 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF264-202 - 627 8e-09 35.1 59.6 2 13 0.14 97 2.8 0.6 6 24 232 250 230 253 0.65 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF264-202 - 627 8e-09 35.1 59.6 3 13 0.081 56 3.6 0.2 6 26 260 280 258 281 0.86 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF264-202 - 627 8e-09 35.1 59.6 4 13 0.044 31 4.5 0.1 5 15 287 297 284 305 0.90 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF264-202 - 627 8e-09 35.1 59.6 5 13 0.21 1.4e+02 2.3 0.2 4 14 314 324 312 337 0.73 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF264-202 - 627 8e-09 35.1 59.6 6 13 0.2 1.4e+02 2.4 0.1 5 14 343 352 340 357 0.82 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF264-202 - 627 8e-09 35.1 59.6 7 13 0.52 3.6e+02 1.0 0.1 6 25 372 391 370 393 0.76 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF264-202 - 627 8e-09 35.1 59.6 8 13 0.00062 0.43 10.4 0.5 6 26 400 420 397 421 0.93 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF264-202 - 627 8e-09 35.1 59.6 9 13 0.93 6.4e+02 0.2 1.7 7 15 429 437 427 446 0.86 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF264-202 - 627 8e-09 35.1 59.6 10 13 0.0091 6.2 6.7 0.1 6 26 456 476 453 477 0.91 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF264-202 - 627 8e-09 35.1 59.6 11 13 0.0003 0.21 11.4 0.1 6 26 484 504 481 505 0.93 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF264-202 - 627 8e-09 35.1 59.6 12 13 0.0032 2.2 8.1 0.2 6 26 512 532 509 533 0.92 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF264-202 - 627 8e-09 35.1 59.6 13 13 0.00019 0.13 12.0 0.9 5 26 539 560 536 561 0.93 zinc-finger C2H2-type zf_UBZ PF18439.1 32 ZNF264-202 - 627 1.5e-07 30.8 57.9 1 13 0.0037 2.6 7.7 0.1 2 13 202 213 201 222 0.82 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF264-202 - 627 1.5e-07 30.8 57.9 2 13 0.0097 6.7 6.4 0.6 3 20 231 249 229 250 0.81 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF264-202 - 627 1.5e-07 30.8 57.9 3 13 0.16 1.1e+02 2.5 0.1 3 14 259 270 257 278 0.77 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF264-202 - 627 1.5e-07 30.8 57.9 4 13 0.071 49 3.6 0.2 3 12 287 296 285 300 0.85 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF264-202 - 627 1.5e-07 30.8 57.9 5 13 0.019 13 5.5 0.2 2 12 314 324 313 327 0.87 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF264-202 - 627 1.5e-07 30.8 57.9 6 13 0.045 31 4.3 0.1 3 14 343 354 341 361 0.86 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF264-202 - 627 1.5e-07 30.8 57.9 7 13 0.00087 0.6 9.8 0.1 3 17 371 385 369 389 0.81 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF264-202 - 627 1.5e-07 30.8 57.9 8 13 0.18 1.3e+02 2.3 0.1 3 13 399 409 397 414 0.84 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF264-202 - 627 1.5e-07 30.8 57.9 9 13 0.014 9.5 5.9 0.1 3 12 427 436 425 438 0.86 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF264-202 - 627 1.5e-07 30.8 57.9 10 13 0.034 23 4.7 0.1 3 13 455 465 453 473 0.83 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF264-202 - 627 1.5e-07 30.8 57.9 11 13 0.45 3.1e+02 1.1 0.2 3 12 483 492 481 494 0.86 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF264-202 - 627 1.5e-07 30.8 57.9 12 13 0.79 5.4e+02 0.3 1.7 3 12 511 520 509 521 0.88 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF264-202 - 627 1.5e-07 30.8 57.9 13 13 0.00036 0.25 11.0 0.1 3 21 539 558 537 558 0.92 Ubiquitin-Binding Zinc Finger # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF264-202.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF264-202.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF264-202.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF264-202.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF264-202.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:02:47 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF264-203.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF264-203.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF264-203.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF264-203.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF264-203.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:02:47 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF264-204.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF264-204.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF264-204.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF264-204.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF264-204.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:02:48 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- KRAB PF01352.27 42 ZNF264-205 - 64 7.9e-25 86.2 0.3 1 1 1.1e-28 9.6e-25 86.0 0.3 1 42 13 54 13 54 0.99 KRAB box # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF264-205.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF264-205.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF264-205.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF264-205.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF264-205.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:02:48 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- KRAB PF01352.27 42 ZNF264-206 - 84 1.6e-24 85.3 0.3 1 1 2.3e-28 2e-24 84.9 0.3 1 42 13 54 13 54 0.99 KRAB box # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF264-206.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF264-206.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF264-206.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF264-206.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF264-206.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:02:48 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF266-201.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF266-201.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF266-201.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF266-201.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF266-201.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:02:49 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZNF266-202 - 549 1.7e-100 325.4 103.9 1 17 0.0065 7.3 7.2 0.0 2 24 93 115 93 117 0.86 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF266-202 - 549 1.7e-100 325.4 103.9 2 17 1.7 1.9e+03 -0.4 0.1 18 24 132 138 115 139 0.61 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF266-202 - 549 1.7e-100 325.4 103.9 3 17 1.1 1.2e+03 0.2 0.1 10 24 151 165 148 167 0.85 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF266-202 - 549 1.7e-100 325.4 103.9 4 17 0.0008 0.89 10.1 0.3 1 25 170 194 170 195 0.88 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF266-202 - 549 1.7e-100 325.4 103.9 5 17 8.3e-07 0.00094 19.5 1.7 7 25 204 222 203 223 0.90 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF266-202 - 549 1.7e-100 325.4 103.9 6 17 2.6e-11 2.9e-08 33.8 0.2 2 26 227 251 226 251 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF266-202 - 549 1.7e-100 325.4 103.9 7 17 2.1e-10 2.4e-07 30.9 1.6 2 25 255 278 254 278 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF266-202 - 549 1.7e-100 325.4 103.9 8 17 1.1e-09 1.2e-06 28.7 0.2 2 25 283 306 283 307 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF266-202 - 549 1.7e-100 325.4 103.9 9 17 4e-09 4.5e-06 26.8 0.8 2 26 311 335 310 335 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF266-202 - 549 1.7e-100 325.4 103.9 10 17 1.1e-10 1.3e-07 31.7 0.5 2 25 339 362 339 363 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF266-202 - 549 1.7e-100 325.4 103.9 11 17 2.4e-11 2.6e-08 33.9 0.5 1 25 366 390 366 391 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF266-202 - 549 1.7e-100 325.4 103.9 12 17 2.2e-11 2.5e-08 34.0 0.7 2 25 395 418 394 418 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF266-202 - 549 1.7e-100 325.4 103.9 13 17 8.8e-12 9.9e-09 35.2 0.4 1 26 422 447 422 447 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF266-202 - 549 1.7e-100 325.4 103.9 14 17 1.3e-10 1.5e-07 31.5 1.5 1 25 450 474 450 475 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF266-202 - 549 1.7e-100 325.4 103.9 15 17 7.7e-12 8.6e-09 35.4 1.1 4 25 481 502 479 503 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF266-202 - 549 1.7e-100 325.4 103.9 16 17 1.1e-11 1.2e-08 35.0 1.1 2 26 507 531 506 531 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF266-202 - 549 1.7e-100 325.4 103.9 17 17 5 5.6e+03 -1.9 0.3 2 9 535 542 534 546 0.82 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZNF266-202 - 549 1.5e-70 229.9 113.3 1 16 1.5 1.7e+03 -0.2 0.3 6 22 83 99 81 99 0.81 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF266-202 - 549 1.5e-70 229.9 113.3 2 16 1.9 2.1e+03 -0.5 0.0 5 11 133 139 132 141 0.86 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF266-202 - 549 1.5e-70 229.9 113.3 3 16 0.0002 0.22 12.0 2.5 4 23 151 178 145 178 0.82 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF266-202 - 549 1.5e-70 229.9 113.3 4 16 0.23 2.6e+02 2.4 0.0 5 17 188 200 186 201 0.88 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF266-202 - 549 1.5e-70 229.9 113.3 5 16 1e-07 0.00012 22.4 0.6 1 23 212 234 212 234 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF266-202 - 549 1.5e-70 229.9 113.3 6 16 5.7e-08 6.4e-05 23.2 3.7 1 23 240 262 240 262 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF266-202 - 549 1.5e-70 229.9 113.3 7 16 4.1e-08 4.6e-05 23.7 2.5 1 23 268 290 268 290 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF266-202 - 549 1.5e-70 229.9 113.3 8 16 6.6e-09 7.4e-06 26.1 0.4 1 23 296 318 296 318 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF266-202 - 549 1.5e-70 229.9 113.3 9 16 2.1e-07 0.00024 21.4 3.1 1 23 324 346 324 346 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF266-202 - 549 1.5e-70 229.9 113.3 10 16 9.7e-11 1.1e-07 31.9 1.0 1 23 352 374 352 374 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF266-202 - 549 1.5e-70 229.9 113.3 11 16 4.8e-08 5.4e-05 23.4 0.7 1 23 380 402 380 402 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF266-202 - 549 1.5e-70 229.9 113.3 12 16 1.9e-06 0.0021 18.4 0.1 1 23 408 430 408 430 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF266-202 - 549 1.5e-70 229.9 113.3 13 16 2.2e-09 2.4e-06 27.7 1.9 1 23 436 458 436 458 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF266-202 - 549 1.5e-70 229.9 113.3 14 16 2.5e-06 0.0028 18.0 1.8 1 23 464 486 464 486 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF266-202 - 549 1.5e-70 229.9 113.3 15 16 2.7e-07 0.00031 21.0 3.1 1 23 492 514 492 514 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF266-202 - 549 1.5e-70 229.9 113.3 16 16 1.4e-08 1.6e-05 25.1 1.5 1 23 520 542 520 542 0.99 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZNF266-202 - 549 2.7e-44 146.0 108.7 1 16 0.088 98 4.2 0.4 5 22 82 99 81 101 0.87 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF266-202 - 549 2.7e-44 146.0 108.7 2 16 4 4.5e+03 -1.0 0.0 5 11 133 139 132 144 0.79 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF266-202 - 549 2.7e-44 146.0 108.7 3 16 0.015 17 6.6 0.9 7 23 162 178 156 179 0.87 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF266-202 - 549 2.7e-44 146.0 108.7 4 16 3.5 4e+03 -0.8 0.0 5 23 188 206 187 207 0.79 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF266-202 - 549 2.7e-44 146.0 108.7 5 16 1.4e-05 0.016 16.0 0.4 1 23 212 234 212 235 0.86 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF266-202 - 549 2.7e-44 146.0 108.7 6 16 3.9e-06 0.0044 17.7 3.1 1 23 240 262 240 263 0.97 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF266-202 - 549 2.7e-44 146.0 108.7 7 16 4.1e-06 0.0045 17.7 1.9 1 23 268 290 268 291 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF266-202 - 549 2.7e-44 146.0 108.7 8 16 5.4e-06 0.006 17.3 0.4 1 23 296 318 296 319 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF266-202 - 549 2.7e-44 146.0 108.7 9 16 1.4e-06 0.0016 19.1 2.6 1 23 324 346 324 347 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF266-202 - 549 2.7e-44 146.0 108.7 10 16 1.6e-06 0.0017 19.0 0.6 1 23 352 374 352 375 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF266-202 - 549 2.7e-44 146.0 108.7 11 16 1.1e-05 0.012 16.3 0.7 1 23 380 402 380 403 0.97 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF266-202 - 549 2.7e-44 146.0 108.7 12 16 0.0002 0.22 12.4 0.1 1 23 408 430 408 431 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF266-202 - 549 2.7e-44 146.0 108.7 13 16 2.6e-06 0.0029 18.3 1.6 1 23 436 458 436 459 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF266-202 - 549 2.7e-44 146.0 108.7 14 16 0.0024 2.7 9.1 1.6 1 23 464 486 464 487 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF266-202 - 549 2.7e-44 146.0 108.7 15 16 2.3e-06 0.0026 18.5 2.4 1 23 492 514 492 515 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF266-202 - 549 2.7e-44 146.0 108.7 16 16 1.7e-07 0.00019 22.0 1.0 1 23 520 542 520 543 0.97 C2H2-type zinc finger zf-C2H2_jaz PF12171.8 27 ZNF266-202 - 549 4.8e-20 71.3 70.8 1 15 0.17 1.9e+02 2.5 0.0 5 18 144 157 144 157 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF266-202 - 549 4.8e-20 71.3 70.8 2 15 0.005 5.6 7.4 0.6 9 24 163 178 162 179 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF266-202 - 549 4.8e-20 71.3 70.8 3 15 5.7 6.4e+03 -2.4 0.0 6 15 188 197 187 199 0.78 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF266-202 - 549 4.8e-20 71.3 70.8 4 15 0.048 53 4.3 0.3 2 12 212 222 211 231 0.86 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF266-202 - 549 4.8e-20 71.3 70.8 5 15 0.0013 1.5 9.2 1.3 2 24 240 262 239 262 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF266-202 - 549 4.8e-20 71.3 70.8 6 15 1.6 1.8e+03 -0.6 0.5 2 11 268 277 267 288 0.77 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF266-202 - 549 4.8e-20 71.3 70.8 7 15 6.4e-05 0.072 13.4 0.1 2 24 296 318 295 318 0.95 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF266-202 - 549 4.8e-20 71.3 70.8 8 15 0.00045 0.5 10.7 0.6 2 21 324 343 323 344 0.87 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF266-202 - 549 4.8e-20 71.3 70.8 9 15 0.043 48 4.4 0.4 2 23 352 373 351 375 0.87 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF266-202 - 549 4.8e-20 71.3 70.8 10 15 0.00084 0.94 9.8 0.1 2 24 380 402 379 402 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF266-202 - 549 4.8e-20 71.3 70.8 11 15 0.28 3.1e+02 1.8 0.0 2 22 408 428 407 428 0.85 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF266-202 - 549 4.8e-20 71.3 70.8 12 15 6.8e-06 0.0077 16.5 0.2 2 24 436 458 435 460 0.95 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF266-202 - 549 4.8e-20 71.3 70.8 13 15 0.26 2.9e+02 1.9 0.2 2 12 464 474 463 474 0.91 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF266-202 - 549 4.8e-20 71.3 70.8 14 15 0.00022 0.25 11.7 2.4 2 24 492 514 491 514 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF266-202 - 549 4.8e-20 71.3 70.8 15 15 6.2e-07 0.0007 19.8 0.1 2 22 520 540 519 540 0.95 Zinc-finger double-stranded RNA-binding zf-C2H2_11 PF16622.5 29 ZNF266-202 - 549 3.5e-18 65.1 59.1 1 12 0.048 53 3.7 0.0 5 24 212 231 209 232 0.82 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF266-202 - 549 3.5e-18 65.1 59.1 2 12 0.0022 2.5 8.0 0.3 5 24 240 259 237 261 0.90 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF266-202 - 549 3.5e-18 65.1 59.1 3 12 1.6e-06 0.0018 18.0 0.8 5 26 268 289 265 290 0.94 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF266-202 - 549 3.5e-18 65.1 59.1 4 12 0.0048 5.3 6.9 0.1 6 24 297 315 294 317 0.88 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF266-202 - 549 3.5e-18 65.1 59.1 5 12 2.6 2.9e+03 -1.9 3.2 7 26 326 345 324 346 0.86 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF266-202 - 549 3.5e-18 65.1 59.1 6 12 0.0025 2.8 7.8 0.0 5 24 352 371 351 373 0.91 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF266-202 - 549 3.5e-18 65.1 59.1 7 12 0.014 16 5.4 0.1 6 24 381 399 379 401 0.88 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF266-202 - 549 3.5e-18 65.1 59.1 8 12 4.7e-05 0.053 13.3 0.2 6 26 409 429 406 430 0.94 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF266-202 - 549 3.5e-18 65.1 59.1 9 12 2.6e-06 0.0029 17.3 0.5 6 25 437 456 434 458 0.93 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF266-202 - 549 3.5e-18 65.1 59.1 10 12 0.057 64 3.4 0.4 7 26 466 485 463 486 0.88 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF266-202 - 549 3.5e-18 65.1 59.1 11 12 0.016 18 5.2 0.4 5 20 492 507 489 512 0.81 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF266-202 - 549 3.5e-18 65.1 59.1 12 12 0.0003 0.33 10.7 0.2 6 23 521 538 518 540 0.91 zinc-finger C2H2-type zf-C2H2_6 PF13912.6 27 ZNF266-202 - 549 4.5e-17 61.6 108.0 1 14 1.3 1.5e+03 -0.6 0.1 5 12 132 139 132 139 0.87 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF266-202 - 549 4.5e-17 61.6 108.0 2 14 1.1 1.2e+03 -0.4 1.1 17 24 171 178 170 181 0.84 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF266-202 - 549 4.5e-17 61.6 108.0 3 14 0.00022 0.25 11.4 1.0 2 24 212 234 212 235 0.81 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF266-202 - 549 4.5e-17 61.6 108.0 4 14 3.5e-05 0.039 13.9 4.2 2 24 240 262 240 265 0.95 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF266-202 - 549 4.5e-17 61.6 108.0 5 14 0.19 2.1e+02 2.0 1.1 2 11 268 277 268 290 0.91 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF266-202 - 549 4.5e-17 61.6 108.0 6 14 4.5e-05 0.05 13.6 0.9 2 25 296 319 296 321 0.95 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF266-202 - 549 4.5e-17 61.6 108.0 7 14 0.00019 0.21 11.6 0.9 2 12 324 334 324 335 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF266-202 - 549 4.5e-17 61.6 108.0 8 14 0.00057 0.64 10.1 1.1 2 25 352 375 352 377 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF266-202 - 549 4.5e-17 61.6 108.0 9 14 2.2e-05 0.024 14.6 1.1 2 24 380 402 380 405 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF266-202 - 549 4.5e-17 61.6 108.0 10 14 0.0072 8 6.6 0.2 2 24 408 430 408 433 0.91 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF266-202 - 549 4.5e-17 61.6 108.0 11 14 2.3e-05 0.026 14.5 2.3 2 26 436 460 436 461 0.95 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF266-202 - 549 4.5e-17 61.6 108.0 12 14 0.072 80 3.4 0.3 2 12 464 474 464 474 0.90 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF266-202 - 549 4.5e-17 61.6 108.0 13 14 0.00018 0.2 11.7 2.7 2 15 492 505 492 516 0.78 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF266-202 - 549 4.5e-17 61.6 108.0 14 14 1.5e-05 0.017 15.1 1.5 2 24 520 542 520 545 0.90 C2H2-type zinc finger XPA_N PF01286.18 32 ZNF266-202 - 549 5.4e-11 42.3 66.5 1 14 9.2 1e+04 -3.3 0.1 6 11 133 138 133 139 0.84 XPA protein N-terminal XPA_N PF01286.18 32 ZNF266-202 - 549 5.4e-11 42.3 66.5 2 14 2 2.2e+03 -1.2 0.0 6 14 188 196 187 197 0.85 XPA protein N-terminal XPA_N PF01286.18 32 ZNF266-202 - 549 5.4e-11 42.3 66.5 3 14 0.00057 0.64 10.1 0.0 3 18 213 228 211 230 0.90 XPA protein N-terminal XPA_N PF01286.18 32 ZNF266-202 - 549 5.4e-11 42.3 66.5 4 14 0.0022 2.5 8.2 0.8 3 14 241 252 239 257 0.89 XPA protein N-terminal XPA_N PF01286.18 32 ZNF266-202 - 549 5.4e-11 42.3 66.5 5 14 0.017 19 5.4 0.5 3 14 269 280 267 286 0.87 XPA protein N-terminal XPA_N PF01286.18 32 ZNF266-202 - 549 5.4e-11 42.3 66.5 6 14 0.034 38 4.5 0.1 3 14 297 308 295 314 0.85 XPA protein N-terminal XPA_N PF01286.18 32 ZNF266-202 - 549 5.4e-11 42.3 66.5 7 14 0.015 16 5.6 1.0 3 21 325 344 323 346 0.82 XPA protein N-terminal XPA_N PF01286.18 32 ZNF266-202 - 549 5.4e-11 42.3 66.5 8 14 0.013 15 5.8 0.1 3 12 353 362 351 369 0.89 XPA protein N-terminal XPA_N PF01286.18 32 ZNF266-202 - 549 5.4e-11 42.3 66.5 9 14 0.00089 0.99 9.5 0.2 3 14 381 392 379 398 0.86 XPA protein N-terminal XPA_N PF01286.18 32 ZNF266-202 - 549 5.4e-11 42.3 66.5 10 14 0.0089 10 6.3 0.1 3 14 409 420 407 422 0.91 XPA protein N-terminal XPA_N PF01286.18 32 ZNF266-202 - 549 5.4e-11 42.3 66.5 11 14 0.0011 1.3 9.1 0.2 3 14 437 448 435 454 0.87 XPA protein N-terminal XPA_N PF01286.18 32 ZNF266-202 - 549 5.4e-11 42.3 66.5 12 14 0.011 12 6.0 0.5 3 11 465 473 463 474 0.90 XPA protein N-terminal XPA_N PF01286.18 32 ZNF266-202 - 549 5.4e-11 42.3 66.5 13 14 0.02 22 5.2 0.3 3 14 493 504 491 507 0.88 XPA protein N-terminal XPA_N PF01286.18 32 ZNF266-202 - 549 5.4e-11 42.3 66.5 14 14 0.0016 1.7 8.7 0.5 3 14 521 532 519 539 0.87 XPA protein N-terminal zf_UBZ PF18439.1 32 ZNF266-202 - 549 3.8e-09 36.0 55.4 1 13 3 3.3e+03 -2.2 0.0 6 14 132 140 132 143 0.82 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF266-202 - 549 3.8e-09 36.0 55.4 2 13 0.04 45 3.7 0.3 3 11 212 220 210 224 0.86 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF266-202 - 549 3.8e-09 36.0 55.4 3 13 0.0025 2.9 7.6 0.8 3 20 240 258 238 259 0.90 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF266-202 - 549 3.8e-09 36.0 55.4 4 13 0.034 38 4.0 0.4 3 15 268 280 266 287 0.80 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF266-202 - 549 3.8e-09 36.0 55.4 5 13 0.00076 0.85 9.3 0.2 3 21 296 315 294 322 0.87 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF266-202 - 549 3.8e-09 36.0 55.4 6 13 0.1 1.1e+02 2.5 0.5 2 12 323 333 322 338 0.85 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF266-202 - 549 3.8e-09 36.0 55.4 7 13 0.0036 4 7.1 0.1 3 20 352 370 350 371 0.86 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF266-202 - 549 3.8e-09 36.0 55.4 8 13 0.00093 1 9.0 0.1 3 20 380 398 378 399 0.90 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF266-202 - 549 3.8e-09 36.0 55.4 9 13 0.077 86 2.9 0.0 3 15 408 420 406 427 0.81 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF266-202 - 549 3.8e-09 36.0 55.4 10 13 0.029 32 4.2 0.1 3 20 436 454 434 455 0.80 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF266-202 - 549 3.8e-09 36.0 55.4 11 13 0.048 54 3.5 0.1 3 13 464 474 462 477 0.85 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF266-202 - 549 3.8e-09 36.0 55.4 12 13 0.002 2.3 7.9 0.2 3 20 492 510 490 511 0.79 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF266-202 - 549 3.8e-09 36.0 55.4 13 13 0.0016 1.8 8.2 0.2 3 20 520 538 518 539 0.83 Ubiquitin-Binding Zinc Finger Zn-ribbon_8 PF09723.10 40 ZNF266-202 - 549 3.5e-08 33.4 75.6 1 13 8 9e+03 -3.1 0.2 10 16 133 139 132 150 0.69 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF266-202 - 549 3.5e-08 33.4 75.6 2 13 0.00027 0.3 11.2 6.3 6 38 212 251 210 253 0.83 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF266-202 - 549 3.5e-08 33.4 75.6 3 13 0.0035 3.9 7.7 1.5 6 19 240 253 239 263 0.79 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF266-202 - 549 3.5e-08 33.4 75.6 4 13 6.3e-05 0.07 13.2 4.7 6 38 268 307 267 308 0.81 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF266-202 - 549 3.5e-08 33.4 75.6 5 13 0.0056 6.2 7.0 4.0 6 36 296 333 295 336 0.78 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF266-202 - 549 3.5e-08 33.4 75.6 6 13 0.14 1.6e+02 2.5 0.4 6 16 324 334 323 340 0.88 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF266-202 - 549 3.5e-08 33.4 75.6 7 13 3.5e-05 0.04 14.0 4.8 6 38 352 391 349 392 0.81 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF266-202 - 549 3.5e-08 33.4 75.6 8 13 0.0053 5.9 7.1 5.2 6 34 380 415 379 417 0.72 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF266-202 - 549 3.5e-08 33.4 75.6 9 13 0.087 97 3.2 0.2 6 16 408 418 407 426 0.84 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF266-202 - 549 3.5e-08 33.4 75.6 10 13 0.00069 0.77 9.9 1.8 6 35 436 472 435 474 0.77 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF266-202 - 549 3.5e-08 33.4 75.6 11 13 0.0023 2.6 8.3 4.2 6 34 464 499 462 502 0.82 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF266-202 - 549 3.5e-08 33.4 75.6 12 13 0.00012 0.13 12.4 5.9 6 34 492 527 491 530 0.85 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF266-202 - 549 3.5e-08 33.4 75.6 13 13 0.0027 3.1 8.0 0.8 6 21 520 535 518 541 0.81 Zinc ribbon domain zf-trcl PF13451.6 48 ZNF266-202 - 549 4.5e-08 32.9 55.9 1 12 4.6 5.1e+03 -2.5 0.0 3 15 154 166 153 170 0.86 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF266-202 - 549 4.5e-08 32.9 55.9 2 12 5.4 6e+03 -2.8 0.0 8 16 187 195 187 197 0.83 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF266-202 - 549 4.5e-08 32.9 55.9 3 12 0.0024 2.7 7.9 0.0 3 18 210 225 208 226 0.88 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF266-202 - 549 4.5e-08 32.9 55.9 4 12 0.012 13 5.8 0.6 2 15 237 250 236 254 0.90 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF266-202 - 549 4.5e-08 32.9 55.9 5 12 0.0011 1.2 9.1 0.1 3 15 266 278 264 281 0.88 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF266-202 - 549 4.5e-08 32.9 55.9 6 12 0.17 1.9e+02 2.1 3.3 3 39 294 329 292 337 0.68 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF266-202 - 549 4.5e-08 32.9 55.9 7 12 0.0023 2.5 8.0 0.2 3 15 350 362 350 365 0.90 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF266-202 - 549 4.5e-08 32.9 55.9 8 12 0.055 61 3.6 0.1 4 14 379 389 377 394 0.84 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF266-202 - 549 4.5e-08 32.9 55.9 9 12 0.086 97 3.0 0.1 3 15 406 418 404 422 0.86 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF266-202 - 549 4.5e-08 32.9 55.9 10 12 0.033 37 4.3 0.1 3 17 434 448 432 451 0.87 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF266-202 - 549 4.5e-08 32.9 55.9 11 12 0.0075 8.4 6.4 0.3 3 16 462 475 460 477 0.90 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF266-202 - 549 4.5e-08 32.9 55.9 12 12 0.00055 0.61 10.0 3.3 3 41 490 527 488 532 0.82 Probable zinc-ribbon domain # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF266-202.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF266-202.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF266-202.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF266-202.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF266-202.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:02:49 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZNF266-203 - 549 1.7e-100 325.4 103.9 1 17 0.0065 7.3 7.2 0.0 2 24 93 115 93 117 0.86 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF266-203 - 549 1.7e-100 325.4 103.9 2 17 1.7 1.9e+03 -0.4 0.1 18 24 132 138 115 139 0.61 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF266-203 - 549 1.7e-100 325.4 103.9 3 17 1.1 1.2e+03 0.2 0.1 10 24 151 165 148 167 0.85 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF266-203 - 549 1.7e-100 325.4 103.9 4 17 0.0008 0.89 10.1 0.3 1 25 170 194 170 195 0.88 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF266-203 - 549 1.7e-100 325.4 103.9 5 17 8.3e-07 0.00094 19.5 1.7 7 25 204 222 203 223 0.90 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF266-203 - 549 1.7e-100 325.4 103.9 6 17 2.6e-11 2.9e-08 33.8 0.2 2 26 227 251 226 251 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF266-203 - 549 1.7e-100 325.4 103.9 7 17 2.1e-10 2.4e-07 30.9 1.6 2 25 255 278 254 278 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF266-203 - 549 1.7e-100 325.4 103.9 8 17 1.1e-09 1.2e-06 28.7 0.2 2 25 283 306 283 307 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF266-203 - 549 1.7e-100 325.4 103.9 9 17 4e-09 4.5e-06 26.8 0.8 2 26 311 335 310 335 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF266-203 - 549 1.7e-100 325.4 103.9 10 17 1.1e-10 1.3e-07 31.7 0.5 2 25 339 362 339 363 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF266-203 - 549 1.7e-100 325.4 103.9 11 17 2.4e-11 2.6e-08 33.9 0.5 1 25 366 390 366 391 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF266-203 - 549 1.7e-100 325.4 103.9 12 17 2.2e-11 2.5e-08 34.0 0.7 2 25 395 418 394 418 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF266-203 - 549 1.7e-100 325.4 103.9 13 17 8.8e-12 9.9e-09 35.2 0.4 1 26 422 447 422 447 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF266-203 - 549 1.7e-100 325.4 103.9 14 17 1.3e-10 1.5e-07 31.5 1.5 1 25 450 474 450 475 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF266-203 - 549 1.7e-100 325.4 103.9 15 17 7.7e-12 8.6e-09 35.4 1.1 4 25 481 502 479 503 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF266-203 - 549 1.7e-100 325.4 103.9 16 17 1.1e-11 1.2e-08 35.0 1.1 2 26 507 531 506 531 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF266-203 - 549 1.7e-100 325.4 103.9 17 17 5 5.6e+03 -1.9 0.3 2 9 535 542 534 546 0.82 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZNF266-203 - 549 1.5e-70 229.9 113.3 1 16 1.5 1.7e+03 -0.2 0.3 6 22 83 99 81 99 0.81 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF266-203 - 549 1.5e-70 229.9 113.3 2 16 1.9 2.1e+03 -0.5 0.0 5 11 133 139 132 141 0.86 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF266-203 - 549 1.5e-70 229.9 113.3 3 16 0.0002 0.22 12.0 2.5 4 23 151 178 145 178 0.82 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF266-203 - 549 1.5e-70 229.9 113.3 4 16 0.23 2.6e+02 2.4 0.0 5 17 188 200 186 201 0.88 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF266-203 - 549 1.5e-70 229.9 113.3 5 16 1e-07 0.00012 22.4 0.6 1 23 212 234 212 234 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF266-203 - 549 1.5e-70 229.9 113.3 6 16 5.7e-08 6.4e-05 23.2 3.7 1 23 240 262 240 262 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF266-203 - 549 1.5e-70 229.9 113.3 7 16 4.1e-08 4.6e-05 23.7 2.5 1 23 268 290 268 290 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF266-203 - 549 1.5e-70 229.9 113.3 8 16 6.6e-09 7.4e-06 26.1 0.4 1 23 296 318 296 318 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF266-203 - 549 1.5e-70 229.9 113.3 9 16 2.1e-07 0.00024 21.4 3.1 1 23 324 346 324 346 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF266-203 - 549 1.5e-70 229.9 113.3 10 16 9.7e-11 1.1e-07 31.9 1.0 1 23 352 374 352 374 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF266-203 - 549 1.5e-70 229.9 113.3 11 16 4.8e-08 5.4e-05 23.4 0.7 1 23 380 402 380 402 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF266-203 - 549 1.5e-70 229.9 113.3 12 16 1.9e-06 0.0021 18.4 0.1 1 23 408 430 408 430 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF266-203 - 549 1.5e-70 229.9 113.3 13 16 2.2e-09 2.4e-06 27.7 1.9 1 23 436 458 436 458 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF266-203 - 549 1.5e-70 229.9 113.3 14 16 2.5e-06 0.0028 18.0 1.8 1 23 464 486 464 486 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF266-203 - 549 1.5e-70 229.9 113.3 15 16 2.7e-07 0.00031 21.0 3.1 1 23 492 514 492 514 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF266-203 - 549 1.5e-70 229.9 113.3 16 16 1.4e-08 1.6e-05 25.1 1.5 1 23 520 542 520 542 0.99 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZNF266-203 - 549 2.7e-44 146.0 108.7 1 16 0.088 98 4.2 0.4 5 22 82 99 81 101 0.87 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF266-203 - 549 2.7e-44 146.0 108.7 2 16 4 4.5e+03 -1.0 0.0 5 11 133 139 132 144 0.79 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF266-203 - 549 2.7e-44 146.0 108.7 3 16 0.015 17 6.6 0.9 7 23 162 178 156 179 0.87 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF266-203 - 549 2.7e-44 146.0 108.7 4 16 3.5 4e+03 -0.8 0.0 5 23 188 206 187 207 0.79 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF266-203 - 549 2.7e-44 146.0 108.7 5 16 1.4e-05 0.016 16.0 0.4 1 23 212 234 212 235 0.86 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF266-203 - 549 2.7e-44 146.0 108.7 6 16 3.9e-06 0.0044 17.7 3.1 1 23 240 262 240 263 0.97 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF266-203 - 549 2.7e-44 146.0 108.7 7 16 4.1e-06 0.0045 17.7 1.9 1 23 268 290 268 291 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF266-203 - 549 2.7e-44 146.0 108.7 8 16 5.4e-06 0.006 17.3 0.4 1 23 296 318 296 319 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF266-203 - 549 2.7e-44 146.0 108.7 9 16 1.4e-06 0.0016 19.1 2.6 1 23 324 346 324 347 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF266-203 - 549 2.7e-44 146.0 108.7 10 16 1.6e-06 0.0017 19.0 0.6 1 23 352 374 352 375 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF266-203 - 549 2.7e-44 146.0 108.7 11 16 1.1e-05 0.012 16.3 0.7 1 23 380 402 380 403 0.97 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF266-203 - 549 2.7e-44 146.0 108.7 12 16 0.0002 0.22 12.4 0.1 1 23 408 430 408 431 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF266-203 - 549 2.7e-44 146.0 108.7 13 16 2.6e-06 0.0029 18.3 1.6 1 23 436 458 436 459 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF266-203 - 549 2.7e-44 146.0 108.7 14 16 0.0024 2.7 9.1 1.6 1 23 464 486 464 487 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF266-203 - 549 2.7e-44 146.0 108.7 15 16 2.3e-06 0.0026 18.5 2.4 1 23 492 514 492 515 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF266-203 - 549 2.7e-44 146.0 108.7 16 16 1.7e-07 0.00019 22.0 1.0 1 23 520 542 520 543 0.97 C2H2-type zinc finger zf-C2H2_jaz PF12171.8 27 ZNF266-203 - 549 4.8e-20 71.3 70.8 1 15 0.17 1.9e+02 2.5 0.0 5 18 144 157 144 157 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF266-203 - 549 4.8e-20 71.3 70.8 2 15 0.005 5.6 7.4 0.6 9 24 163 178 162 179 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF266-203 - 549 4.8e-20 71.3 70.8 3 15 5.7 6.4e+03 -2.4 0.0 6 15 188 197 187 199 0.78 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF266-203 - 549 4.8e-20 71.3 70.8 4 15 0.048 53 4.3 0.3 2 12 212 222 211 231 0.86 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF266-203 - 549 4.8e-20 71.3 70.8 5 15 0.0013 1.5 9.2 1.3 2 24 240 262 239 262 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF266-203 - 549 4.8e-20 71.3 70.8 6 15 1.6 1.8e+03 -0.6 0.5 2 11 268 277 267 288 0.77 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF266-203 - 549 4.8e-20 71.3 70.8 7 15 6.4e-05 0.072 13.4 0.1 2 24 296 318 295 318 0.95 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF266-203 - 549 4.8e-20 71.3 70.8 8 15 0.00045 0.5 10.7 0.6 2 21 324 343 323 344 0.87 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF266-203 - 549 4.8e-20 71.3 70.8 9 15 0.043 48 4.4 0.4 2 23 352 373 351 375 0.87 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF266-203 - 549 4.8e-20 71.3 70.8 10 15 0.00084 0.94 9.8 0.1 2 24 380 402 379 402 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF266-203 - 549 4.8e-20 71.3 70.8 11 15 0.28 3.1e+02 1.8 0.0 2 22 408 428 407 428 0.85 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF266-203 - 549 4.8e-20 71.3 70.8 12 15 6.8e-06 0.0077 16.5 0.2 2 24 436 458 435 460 0.95 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF266-203 - 549 4.8e-20 71.3 70.8 13 15 0.26 2.9e+02 1.9 0.2 2 12 464 474 463 474 0.91 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF266-203 - 549 4.8e-20 71.3 70.8 14 15 0.00022 0.25 11.7 2.4 2 24 492 514 491 514 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF266-203 - 549 4.8e-20 71.3 70.8 15 15 6.2e-07 0.0007 19.8 0.1 2 22 520 540 519 540 0.95 Zinc-finger double-stranded RNA-binding zf-C2H2_11 PF16622.5 29 ZNF266-203 - 549 3.5e-18 65.1 59.1 1 12 0.048 53 3.7 0.0 5 24 212 231 209 232 0.82 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF266-203 - 549 3.5e-18 65.1 59.1 2 12 0.0022 2.5 8.0 0.3 5 24 240 259 237 261 0.90 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF266-203 - 549 3.5e-18 65.1 59.1 3 12 1.6e-06 0.0018 18.0 0.8 5 26 268 289 265 290 0.94 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF266-203 - 549 3.5e-18 65.1 59.1 4 12 0.0048 5.3 6.9 0.1 6 24 297 315 294 317 0.88 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF266-203 - 549 3.5e-18 65.1 59.1 5 12 2.6 2.9e+03 -1.9 3.2 7 26 326 345 324 346 0.86 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF266-203 - 549 3.5e-18 65.1 59.1 6 12 0.0025 2.8 7.8 0.0 5 24 352 371 351 373 0.91 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF266-203 - 549 3.5e-18 65.1 59.1 7 12 0.014 16 5.4 0.1 6 24 381 399 379 401 0.88 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF266-203 - 549 3.5e-18 65.1 59.1 8 12 4.7e-05 0.053 13.3 0.2 6 26 409 429 406 430 0.94 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF266-203 - 549 3.5e-18 65.1 59.1 9 12 2.6e-06 0.0029 17.3 0.5 6 25 437 456 434 458 0.93 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF266-203 - 549 3.5e-18 65.1 59.1 10 12 0.057 64 3.4 0.4 7 26 466 485 463 486 0.88 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF266-203 - 549 3.5e-18 65.1 59.1 11 12 0.016 18 5.2 0.4 5 20 492 507 489 512 0.81 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF266-203 - 549 3.5e-18 65.1 59.1 12 12 0.0003 0.33 10.7 0.2 6 23 521 538 518 540 0.91 zinc-finger C2H2-type zf-C2H2_6 PF13912.6 27 ZNF266-203 - 549 4.5e-17 61.6 108.0 1 14 1.3 1.5e+03 -0.6 0.1 5 12 132 139 132 139 0.87 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF266-203 - 549 4.5e-17 61.6 108.0 2 14 1.1 1.2e+03 -0.4 1.1 17 24 171 178 170 181 0.84 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF266-203 - 549 4.5e-17 61.6 108.0 3 14 0.00022 0.25 11.4 1.0 2 24 212 234 212 235 0.81 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF266-203 - 549 4.5e-17 61.6 108.0 4 14 3.5e-05 0.039 13.9 4.2 2 24 240 262 240 265 0.95 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF266-203 - 549 4.5e-17 61.6 108.0 5 14 0.19 2.1e+02 2.0 1.1 2 11 268 277 268 290 0.91 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF266-203 - 549 4.5e-17 61.6 108.0 6 14 4.5e-05 0.05 13.6 0.9 2 25 296 319 296 321 0.95 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF266-203 - 549 4.5e-17 61.6 108.0 7 14 0.00019 0.21 11.6 0.9 2 12 324 334 324 335 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF266-203 - 549 4.5e-17 61.6 108.0 8 14 0.00057 0.64 10.1 1.1 2 25 352 375 352 377 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF266-203 - 549 4.5e-17 61.6 108.0 9 14 2.2e-05 0.024 14.6 1.1 2 24 380 402 380 405 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF266-203 - 549 4.5e-17 61.6 108.0 10 14 0.0072 8 6.6 0.2 2 24 408 430 408 433 0.91 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF266-203 - 549 4.5e-17 61.6 108.0 11 14 2.3e-05 0.026 14.5 2.3 2 26 436 460 436 461 0.95 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF266-203 - 549 4.5e-17 61.6 108.0 12 14 0.072 80 3.4 0.3 2 12 464 474 464 474 0.90 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF266-203 - 549 4.5e-17 61.6 108.0 13 14 0.00018 0.2 11.7 2.7 2 15 492 505 492 516 0.78 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF266-203 - 549 4.5e-17 61.6 108.0 14 14 1.5e-05 0.017 15.1 1.5 2 24 520 542 520 545 0.90 C2H2-type zinc finger XPA_N PF01286.18 32 ZNF266-203 - 549 5.4e-11 42.3 66.5 1 14 9.2 1e+04 -3.3 0.1 6 11 133 138 133 139 0.84 XPA protein N-terminal XPA_N PF01286.18 32 ZNF266-203 - 549 5.4e-11 42.3 66.5 2 14 2 2.2e+03 -1.2 0.0 6 14 188 196 187 197 0.85 XPA protein N-terminal XPA_N PF01286.18 32 ZNF266-203 - 549 5.4e-11 42.3 66.5 3 14 0.00057 0.64 10.1 0.0 3 18 213 228 211 230 0.90 XPA protein N-terminal XPA_N PF01286.18 32 ZNF266-203 - 549 5.4e-11 42.3 66.5 4 14 0.0022 2.5 8.2 0.8 3 14 241 252 239 257 0.89 XPA protein N-terminal XPA_N PF01286.18 32 ZNF266-203 - 549 5.4e-11 42.3 66.5 5 14 0.017 19 5.4 0.5 3 14 269 280 267 286 0.87 XPA protein N-terminal XPA_N PF01286.18 32 ZNF266-203 - 549 5.4e-11 42.3 66.5 6 14 0.034 38 4.5 0.1 3 14 297 308 295 314 0.85 XPA protein N-terminal XPA_N PF01286.18 32 ZNF266-203 - 549 5.4e-11 42.3 66.5 7 14 0.015 16 5.6 1.0 3 21 325 344 323 346 0.82 XPA protein N-terminal XPA_N PF01286.18 32 ZNF266-203 - 549 5.4e-11 42.3 66.5 8 14 0.013 15 5.8 0.1 3 12 353 362 351 369 0.89 XPA protein N-terminal XPA_N PF01286.18 32 ZNF266-203 - 549 5.4e-11 42.3 66.5 9 14 0.00089 0.99 9.5 0.2 3 14 381 392 379 398 0.86 XPA protein N-terminal XPA_N PF01286.18 32 ZNF266-203 - 549 5.4e-11 42.3 66.5 10 14 0.0089 10 6.3 0.1 3 14 409 420 407 422 0.91 XPA protein N-terminal XPA_N PF01286.18 32 ZNF266-203 - 549 5.4e-11 42.3 66.5 11 14 0.0011 1.3 9.1 0.2 3 14 437 448 435 454 0.87 XPA protein N-terminal XPA_N PF01286.18 32 ZNF266-203 - 549 5.4e-11 42.3 66.5 12 14 0.011 12 6.0 0.5 3 11 465 473 463 474 0.90 XPA protein N-terminal XPA_N PF01286.18 32 ZNF266-203 - 549 5.4e-11 42.3 66.5 13 14 0.02 22 5.2 0.3 3 14 493 504 491 507 0.88 XPA protein N-terminal XPA_N PF01286.18 32 ZNF266-203 - 549 5.4e-11 42.3 66.5 14 14 0.0016 1.7 8.7 0.5 3 14 521 532 519 539 0.87 XPA protein N-terminal zf_UBZ PF18439.1 32 ZNF266-203 - 549 3.8e-09 36.0 55.4 1 13 3 3.3e+03 -2.2 0.0 6 14 132 140 132 143 0.82 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF266-203 - 549 3.8e-09 36.0 55.4 2 13 0.04 45 3.7 0.3 3 11 212 220 210 224 0.86 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF266-203 - 549 3.8e-09 36.0 55.4 3 13 0.0025 2.9 7.6 0.8 3 20 240 258 238 259 0.90 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF266-203 - 549 3.8e-09 36.0 55.4 4 13 0.034 38 4.0 0.4 3 15 268 280 266 287 0.80 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF266-203 - 549 3.8e-09 36.0 55.4 5 13 0.00076 0.85 9.3 0.2 3 21 296 315 294 322 0.87 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF266-203 - 549 3.8e-09 36.0 55.4 6 13 0.1 1.1e+02 2.5 0.5 2 12 323 333 322 338 0.85 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF266-203 - 549 3.8e-09 36.0 55.4 7 13 0.0036 4 7.1 0.1 3 20 352 370 350 371 0.86 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF266-203 - 549 3.8e-09 36.0 55.4 8 13 0.00093 1 9.0 0.1 3 20 380 398 378 399 0.90 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF266-203 - 549 3.8e-09 36.0 55.4 9 13 0.077 86 2.9 0.0 3 15 408 420 406 427 0.81 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF266-203 - 549 3.8e-09 36.0 55.4 10 13 0.029 32 4.2 0.1 3 20 436 454 434 455 0.80 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF266-203 - 549 3.8e-09 36.0 55.4 11 13 0.048 54 3.5 0.1 3 13 464 474 462 477 0.85 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF266-203 - 549 3.8e-09 36.0 55.4 12 13 0.002 2.3 7.9 0.2 3 20 492 510 490 511 0.79 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF266-203 - 549 3.8e-09 36.0 55.4 13 13 0.0016 1.8 8.2 0.2 3 20 520 538 518 539 0.83 Ubiquitin-Binding Zinc Finger Zn-ribbon_8 PF09723.10 40 ZNF266-203 - 549 3.5e-08 33.4 75.6 1 13 8 9e+03 -3.1 0.2 10 16 133 139 132 150 0.69 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF266-203 - 549 3.5e-08 33.4 75.6 2 13 0.00027 0.3 11.2 6.3 6 38 212 251 210 253 0.83 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF266-203 - 549 3.5e-08 33.4 75.6 3 13 0.0035 3.9 7.7 1.5 6 19 240 253 239 263 0.79 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF266-203 - 549 3.5e-08 33.4 75.6 4 13 6.3e-05 0.07 13.2 4.7 6 38 268 307 267 308 0.81 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF266-203 - 549 3.5e-08 33.4 75.6 5 13 0.0056 6.2 7.0 4.0 6 36 296 333 295 336 0.78 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF266-203 - 549 3.5e-08 33.4 75.6 6 13 0.14 1.6e+02 2.5 0.4 6 16 324 334 323 340 0.88 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF266-203 - 549 3.5e-08 33.4 75.6 7 13 3.5e-05 0.04 14.0 4.8 6 38 352 391 349 392 0.81 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF266-203 - 549 3.5e-08 33.4 75.6 8 13 0.0053 5.9 7.1 5.2 6 34 380 415 379 417 0.72 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF266-203 - 549 3.5e-08 33.4 75.6 9 13 0.087 97 3.2 0.2 6 16 408 418 407 426 0.84 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF266-203 - 549 3.5e-08 33.4 75.6 10 13 0.00069 0.77 9.9 1.8 6 35 436 472 435 474 0.77 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF266-203 - 549 3.5e-08 33.4 75.6 11 13 0.0023 2.6 8.3 4.2 6 34 464 499 462 502 0.82 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF266-203 - 549 3.5e-08 33.4 75.6 12 13 0.00012 0.13 12.4 5.9 6 34 492 527 491 530 0.85 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF266-203 - 549 3.5e-08 33.4 75.6 13 13 0.0027 3.1 8.0 0.8 6 21 520 535 518 541 0.81 Zinc ribbon domain zf-trcl PF13451.6 48 ZNF266-203 - 549 4.5e-08 32.9 55.9 1 12 4.6 5.1e+03 -2.5 0.0 3 15 154 166 153 170 0.86 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF266-203 - 549 4.5e-08 32.9 55.9 2 12 5.4 6e+03 -2.8 0.0 8 16 187 195 187 197 0.83 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF266-203 - 549 4.5e-08 32.9 55.9 3 12 0.0024 2.7 7.9 0.0 3 18 210 225 208 226 0.88 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF266-203 - 549 4.5e-08 32.9 55.9 4 12 0.012 13 5.8 0.6 2 15 237 250 236 254 0.90 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF266-203 - 549 4.5e-08 32.9 55.9 5 12 0.0011 1.2 9.1 0.1 3 15 266 278 264 281 0.88 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF266-203 - 549 4.5e-08 32.9 55.9 6 12 0.17 1.9e+02 2.1 3.3 3 39 294 329 292 337 0.68 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF266-203 - 549 4.5e-08 32.9 55.9 7 12 0.0023 2.5 8.0 0.2 3 15 350 362 350 365 0.90 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF266-203 - 549 4.5e-08 32.9 55.9 8 12 0.055 61 3.6 0.1 4 14 379 389 377 394 0.84 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF266-203 - 549 4.5e-08 32.9 55.9 9 12 0.086 97 3.0 0.1 3 15 406 418 404 422 0.86 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF266-203 - 549 4.5e-08 32.9 55.9 10 12 0.033 37 4.3 0.1 3 17 434 448 432 451 0.87 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF266-203 - 549 4.5e-08 32.9 55.9 11 12 0.0075 8.4 6.4 0.3 3 16 462 475 460 477 0.90 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF266-203 - 549 4.5e-08 32.9 55.9 12 12 0.00055 0.61 10.0 3.3 3 41 490 527 488 532 0.82 Probable zinc-ribbon domain # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF266-203.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF266-203.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF266-203.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF266-203.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF266-203.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:02:50 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZNF266-204 - 549 1.7e-100 325.4 103.9 1 17 0.0065 7.3 7.2 0.0 2 24 93 115 93 117 0.86 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF266-204 - 549 1.7e-100 325.4 103.9 2 17 1.7 1.9e+03 -0.4 0.1 18 24 132 138 115 139 0.61 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF266-204 - 549 1.7e-100 325.4 103.9 3 17 1.1 1.2e+03 0.2 0.1 10 24 151 165 148 167 0.85 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF266-204 - 549 1.7e-100 325.4 103.9 4 17 0.0008 0.89 10.1 0.3 1 25 170 194 170 195 0.88 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF266-204 - 549 1.7e-100 325.4 103.9 5 17 8.3e-07 0.00094 19.5 1.7 7 25 204 222 203 223 0.90 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF266-204 - 549 1.7e-100 325.4 103.9 6 17 2.6e-11 2.9e-08 33.8 0.2 2 26 227 251 226 251 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF266-204 - 549 1.7e-100 325.4 103.9 7 17 2.1e-10 2.4e-07 30.9 1.6 2 25 255 278 254 278 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF266-204 - 549 1.7e-100 325.4 103.9 8 17 1.1e-09 1.2e-06 28.7 0.2 2 25 283 306 283 307 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF266-204 - 549 1.7e-100 325.4 103.9 9 17 4e-09 4.5e-06 26.8 0.8 2 26 311 335 310 335 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF266-204 - 549 1.7e-100 325.4 103.9 10 17 1.1e-10 1.3e-07 31.7 0.5 2 25 339 362 339 363 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF266-204 - 549 1.7e-100 325.4 103.9 11 17 2.4e-11 2.6e-08 33.9 0.5 1 25 366 390 366 391 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF266-204 - 549 1.7e-100 325.4 103.9 12 17 2.2e-11 2.5e-08 34.0 0.7 2 25 395 418 394 418 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF266-204 - 549 1.7e-100 325.4 103.9 13 17 8.8e-12 9.9e-09 35.2 0.4 1 26 422 447 422 447 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF266-204 - 549 1.7e-100 325.4 103.9 14 17 1.3e-10 1.5e-07 31.5 1.5 1 25 450 474 450 475 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF266-204 - 549 1.7e-100 325.4 103.9 15 17 7.7e-12 8.6e-09 35.4 1.1 4 25 481 502 479 503 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF266-204 - 549 1.7e-100 325.4 103.9 16 17 1.1e-11 1.2e-08 35.0 1.1 2 26 507 531 506 531 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF266-204 - 549 1.7e-100 325.4 103.9 17 17 5 5.6e+03 -1.9 0.3 2 9 535 542 534 546 0.82 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZNF266-204 - 549 1.5e-70 229.9 113.3 1 16 1.5 1.7e+03 -0.2 0.3 6 22 83 99 81 99 0.81 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF266-204 - 549 1.5e-70 229.9 113.3 2 16 1.9 2.1e+03 -0.5 0.0 5 11 133 139 132 141 0.86 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF266-204 - 549 1.5e-70 229.9 113.3 3 16 0.0002 0.22 12.0 2.5 4 23 151 178 145 178 0.82 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF266-204 - 549 1.5e-70 229.9 113.3 4 16 0.23 2.6e+02 2.4 0.0 5 17 188 200 186 201 0.88 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF266-204 - 549 1.5e-70 229.9 113.3 5 16 1e-07 0.00012 22.4 0.6 1 23 212 234 212 234 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF266-204 - 549 1.5e-70 229.9 113.3 6 16 5.7e-08 6.4e-05 23.2 3.7 1 23 240 262 240 262 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF266-204 - 549 1.5e-70 229.9 113.3 7 16 4.1e-08 4.6e-05 23.7 2.5 1 23 268 290 268 290 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF266-204 - 549 1.5e-70 229.9 113.3 8 16 6.6e-09 7.4e-06 26.1 0.4 1 23 296 318 296 318 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF266-204 - 549 1.5e-70 229.9 113.3 9 16 2.1e-07 0.00024 21.4 3.1 1 23 324 346 324 346 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF266-204 - 549 1.5e-70 229.9 113.3 10 16 9.7e-11 1.1e-07 31.9 1.0 1 23 352 374 352 374 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF266-204 - 549 1.5e-70 229.9 113.3 11 16 4.8e-08 5.4e-05 23.4 0.7 1 23 380 402 380 402 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF266-204 - 549 1.5e-70 229.9 113.3 12 16 1.9e-06 0.0021 18.4 0.1 1 23 408 430 408 430 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF266-204 - 549 1.5e-70 229.9 113.3 13 16 2.2e-09 2.4e-06 27.7 1.9 1 23 436 458 436 458 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF266-204 - 549 1.5e-70 229.9 113.3 14 16 2.5e-06 0.0028 18.0 1.8 1 23 464 486 464 486 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF266-204 - 549 1.5e-70 229.9 113.3 15 16 2.7e-07 0.00031 21.0 3.1 1 23 492 514 492 514 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF266-204 - 549 1.5e-70 229.9 113.3 16 16 1.4e-08 1.6e-05 25.1 1.5 1 23 520 542 520 542 0.99 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZNF266-204 - 549 2.7e-44 146.0 108.7 1 16 0.088 98 4.2 0.4 5 22 82 99 81 101 0.87 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF266-204 - 549 2.7e-44 146.0 108.7 2 16 4 4.5e+03 -1.0 0.0 5 11 133 139 132 144 0.79 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF266-204 - 549 2.7e-44 146.0 108.7 3 16 0.015 17 6.6 0.9 7 23 162 178 156 179 0.87 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF266-204 - 549 2.7e-44 146.0 108.7 4 16 3.5 4e+03 -0.8 0.0 5 23 188 206 187 207 0.79 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF266-204 - 549 2.7e-44 146.0 108.7 5 16 1.4e-05 0.016 16.0 0.4 1 23 212 234 212 235 0.86 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF266-204 - 549 2.7e-44 146.0 108.7 6 16 3.9e-06 0.0044 17.7 3.1 1 23 240 262 240 263 0.97 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF266-204 - 549 2.7e-44 146.0 108.7 7 16 4.1e-06 0.0045 17.7 1.9 1 23 268 290 268 291 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF266-204 - 549 2.7e-44 146.0 108.7 8 16 5.4e-06 0.006 17.3 0.4 1 23 296 318 296 319 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF266-204 - 549 2.7e-44 146.0 108.7 9 16 1.4e-06 0.0016 19.1 2.6 1 23 324 346 324 347 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF266-204 - 549 2.7e-44 146.0 108.7 10 16 1.6e-06 0.0017 19.0 0.6 1 23 352 374 352 375 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF266-204 - 549 2.7e-44 146.0 108.7 11 16 1.1e-05 0.012 16.3 0.7 1 23 380 402 380 403 0.97 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF266-204 - 549 2.7e-44 146.0 108.7 12 16 0.0002 0.22 12.4 0.1 1 23 408 430 408 431 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF266-204 - 549 2.7e-44 146.0 108.7 13 16 2.6e-06 0.0029 18.3 1.6 1 23 436 458 436 459 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF266-204 - 549 2.7e-44 146.0 108.7 14 16 0.0024 2.7 9.1 1.6 1 23 464 486 464 487 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF266-204 - 549 2.7e-44 146.0 108.7 15 16 2.3e-06 0.0026 18.5 2.4 1 23 492 514 492 515 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF266-204 - 549 2.7e-44 146.0 108.7 16 16 1.7e-07 0.00019 22.0 1.0 1 23 520 542 520 543 0.97 C2H2-type zinc finger zf-C2H2_jaz PF12171.8 27 ZNF266-204 - 549 4.8e-20 71.3 70.8 1 15 0.17 1.9e+02 2.5 0.0 5 18 144 157 144 157 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF266-204 - 549 4.8e-20 71.3 70.8 2 15 0.005 5.6 7.4 0.6 9 24 163 178 162 179 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF266-204 - 549 4.8e-20 71.3 70.8 3 15 5.7 6.4e+03 -2.4 0.0 6 15 188 197 187 199 0.78 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF266-204 - 549 4.8e-20 71.3 70.8 4 15 0.048 53 4.3 0.3 2 12 212 222 211 231 0.86 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF266-204 - 549 4.8e-20 71.3 70.8 5 15 0.0013 1.5 9.2 1.3 2 24 240 262 239 262 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF266-204 - 549 4.8e-20 71.3 70.8 6 15 1.6 1.8e+03 -0.6 0.5 2 11 268 277 267 288 0.77 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF266-204 - 549 4.8e-20 71.3 70.8 7 15 6.4e-05 0.072 13.4 0.1 2 24 296 318 295 318 0.95 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF266-204 - 549 4.8e-20 71.3 70.8 8 15 0.00045 0.5 10.7 0.6 2 21 324 343 323 344 0.87 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF266-204 - 549 4.8e-20 71.3 70.8 9 15 0.043 48 4.4 0.4 2 23 352 373 351 375 0.87 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF266-204 - 549 4.8e-20 71.3 70.8 10 15 0.00084 0.94 9.8 0.1 2 24 380 402 379 402 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF266-204 - 549 4.8e-20 71.3 70.8 11 15 0.28 3.1e+02 1.8 0.0 2 22 408 428 407 428 0.85 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF266-204 - 549 4.8e-20 71.3 70.8 12 15 6.8e-06 0.0077 16.5 0.2 2 24 436 458 435 460 0.95 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF266-204 - 549 4.8e-20 71.3 70.8 13 15 0.26 2.9e+02 1.9 0.2 2 12 464 474 463 474 0.91 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF266-204 - 549 4.8e-20 71.3 70.8 14 15 0.00022 0.25 11.7 2.4 2 24 492 514 491 514 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF266-204 - 549 4.8e-20 71.3 70.8 15 15 6.2e-07 0.0007 19.8 0.1 2 22 520 540 519 540 0.95 Zinc-finger double-stranded RNA-binding zf-C2H2_11 PF16622.5 29 ZNF266-204 - 549 3.5e-18 65.1 59.1 1 12 0.048 53 3.7 0.0 5 24 212 231 209 232 0.82 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF266-204 - 549 3.5e-18 65.1 59.1 2 12 0.0022 2.5 8.0 0.3 5 24 240 259 237 261 0.90 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF266-204 - 549 3.5e-18 65.1 59.1 3 12 1.6e-06 0.0018 18.0 0.8 5 26 268 289 265 290 0.94 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF266-204 - 549 3.5e-18 65.1 59.1 4 12 0.0048 5.3 6.9 0.1 6 24 297 315 294 317 0.88 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF266-204 - 549 3.5e-18 65.1 59.1 5 12 2.6 2.9e+03 -1.9 3.2 7 26 326 345 324 346 0.86 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF266-204 - 549 3.5e-18 65.1 59.1 6 12 0.0025 2.8 7.8 0.0 5 24 352 371 351 373 0.91 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF266-204 - 549 3.5e-18 65.1 59.1 7 12 0.014 16 5.4 0.1 6 24 381 399 379 401 0.88 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF266-204 - 549 3.5e-18 65.1 59.1 8 12 4.7e-05 0.053 13.3 0.2 6 26 409 429 406 430 0.94 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF266-204 - 549 3.5e-18 65.1 59.1 9 12 2.6e-06 0.0029 17.3 0.5 6 25 437 456 434 458 0.93 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF266-204 - 549 3.5e-18 65.1 59.1 10 12 0.057 64 3.4 0.4 7 26 466 485 463 486 0.88 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF266-204 - 549 3.5e-18 65.1 59.1 11 12 0.016 18 5.2 0.4 5 20 492 507 489 512 0.81 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF266-204 - 549 3.5e-18 65.1 59.1 12 12 0.0003 0.33 10.7 0.2 6 23 521 538 518 540 0.91 zinc-finger C2H2-type zf-C2H2_6 PF13912.6 27 ZNF266-204 - 549 4.5e-17 61.6 108.0 1 14 1.3 1.5e+03 -0.6 0.1 5 12 132 139 132 139 0.87 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF266-204 - 549 4.5e-17 61.6 108.0 2 14 1.1 1.2e+03 -0.4 1.1 17 24 171 178 170 181 0.84 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF266-204 - 549 4.5e-17 61.6 108.0 3 14 0.00022 0.25 11.4 1.0 2 24 212 234 212 235 0.81 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF266-204 - 549 4.5e-17 61.6 108.0 4 14 3.5e-05 0.039 13.9 4.2 2 24 240 262 240 265 0.95 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF266-204 - 549 4.5e-17 61.6 108.0 5 14 0.19 2.1e+02 2.0 1.1 2 11 268 277 268 290 0.91 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF266-204 - 549 4.5e-17 61.6 108.0 6 14 4.5e-05 0.05 13.6 0.9 2 25 296 319 296 321 0.95 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF266-204 - 549 4.5e-17 61.6 108.0 7 14 0.00019 0.21 11.6 0.9 2 12 324 334 324 335 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF266-204 - 549 4.5e-17 61.6 108.0 8 14 0.00057 0.64 10.1 1.1 2 25 352 375 352 377 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF266-204 - 549 4.5e-17 61.6 108.0 9 14 2.2e-05 0.024 14.6 1.1 2 24 380 402 380 405 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF266-204 - 549 4.5e-17 61.6 108.0 10 14 0.0072 8 6.6 0.2 2 24 408 430 408 433 0.91 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF266-204 - 549 4.5e-17 61.6 108.0 11 14 2.3e-05 0.026 14.5 2.3 2 26 436 460 436 461 0.95 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF266-204 - 549 4.5e-17 61.6 108.0 12 14 0.072 80 3.4 0.3 2 12 464 474 464 474 0.90 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF266-204 - 549 4.5e-17 61.6 108.0 13 14 0.00018 0.2 11.7 2.7 2 15 492 505 492 516 0.78 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF266-204 - 549 4.5e-17 61.6 108.0 14 14 1.5e-05 0.017 15.1 1.5 2 24 520 542 520 545 0.90 C2H2-type zinc finger XPA_N PF01286.18 32 ZNF266-204 - 549 5.4e-11 42.3 66.5 1 14 9.2 1e+04 -3.3 0.1 6 11 133 138 133 139 0.84 XPA protein N-terminal XPA_N PF01286.18 32 ZNF266-204 - 549 5.4e-11 42.3 66.5 2 14 2 2.2e+03 -1.2 0.0 6 14 188 196 187 197 0.85 XPA protein N-terminal XPA_N PF01286.18 32 ZNF266-204 - 549 5.4e-11 42.3 66.5 3 14 0.00057 0.64 10.1 0.0 3 18 213 228 211 230 0.90 XPA protein N-terminal XPA_N PF01286.18 32 ZNF266-204 - 549 5.4e-11 42.3 66.5 4 14 0.0022 2.5 8.2 0.8 3 14 241 252 239 257 0.89 XPA protein N-terminal XPA_N PF01286.18 32 ZNF266-204 - 549 5.4e-11 42.3 66.5 5 14 0.017 19 5.4 0.5 3 14 269 280 267 286 0.87 XPA protein N-terminal XPA_N PF01286.18 32 ZNF266-204 - 549 5.4e-11 42.3 66.5 6 14 0.034 38 4.5 0.1 3 14 297 308 295 314 0.85 XPA protein N-terminal XPA_N PF01286.18 32 ZNF266-204 - 549 5.4e-11 42.3 66.5 7 14 0.015 16 5.6 1.0 3 21 325 344 323 346 0.82 XPA protein N-terminal XPA_N PF01286.18 32 ZNF266-204 - 549 5.4e-11 42.3 66.5 8 14 0.013 15 5.8 0.1 3 12 353 362 351 369 0.89 XPA protein N-terminal XPA_N PF01286.18 32 ZNF266-204 - 549 5.4e-11 42.3 66.5 9 14 0.00089 0.99 9.5 0.2 3 14 381 392 379 398 0.86 XPA protein N-terminal XPA_N PF01286.18 32 ZNF266-204 - 549 5.4e-11 42.3 66.5 10 14 0.0089 10 6.3 0.1 3 14 409 420 407 422 0.91 XPA protein N-terminal XPA_N PF01286.18 32 ZNF266-204 - 549 5.4e-11 42.3 66.5 11 14 0.0011 1.3 9.1 0.2 3 14 437 448 435 454 0.87 XPA protein N-terminal XPA_N PF01286.18 32 ZNF266-204 - 549 5.4e-11 42.3 66.5 12 14 0.011 12 6.0 0.5 3 11 465 473 463 474 0.90 XPA protein N-terminal XPA_N PF01286.18 32 ZNF266-204 - 549 5.4e-11 42.3 66.5 13 14 0.02 22 5.2 0.3 3 14 493 504 491 507 0.88 XPA protein N-terminal XPA_N PF01286.18 32 ZNF266-204 - 549 5.4e-11 42.3 66.5 14 14 0.0016 1.7 8.7 0.5 3 14 521 532 519 539 0.87 XPA protein N-terminal zf_UBZ PF18439.1 32 ZNF266-204 - 549 3.8e-09 36.0 55.4 1 13 3 3.3e+03 -2.2 0.0 6 14 132 140 132 143 0.82 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF266-204 - 549 3.8e-09 36.0 55.4 2 13 0.04 45 3.7 0.3 3 11 212 220 210 224 0.86 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF266-204 - 549 3.8e-09 36.0 55.4 3 13 0.0025 2.9 7.6 0.8 3 20 240 258 238 259 0.90 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF266-204 - 549 3.8e-09 36.0 55.4 4 13 0.034 38 4.0 0.4 3 15 268 280 266 287 0.80 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF266-204 - 549 3.8e-09 36.0 55.4 5 13 0.00076 0.85 9.3 0.2 3 21 296 315 294 322 0.87 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF266-204 - 549 3.8e-09 36.0 55.4 6 13 0.1 1.1e+02 2.5 0.5 2 12 323 333 322 338 0.85 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF266-204 - 549 3.8e-09 36.0 55.4 7 13 0.0036 4 7.1 0.1 3 20 352 370 350 371 0.86 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF266-204 - 549 3.8e-09 36.0 55.4 8 13 0.00093 1 9.0 0.1 3 20 380 398 378 399 0.90 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF266-204 - 549 3.8e-09 36.0 55.4 9 13 0.077 86 2.9 0.0 3 15 408 420 406 427 0.81 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF266-204 - 549 3.8e-09 36.0 55.4 10 13 0.029 32 4.2 0.1 3 20 436 454 434 455 0.80 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF266-204 - 549 3.8e-09 36.0 55.4 11 13 0.048 54 3.5 0.1 3 13 464 474 462 477 0.85 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF266-204 - 549 3.8e-09 36.0 55.4 12 13 0.002 2.3 7.9 0.2 3 20 492 510 490 511 0.79 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF266-204 - 549 3.8e-09 36.0 55.4 13 13 0.0016 1.8 8.2 0.2 3 20 520 538 518 539 0.83 Ubiquitin-Binding Zinc Finger Zn-ribbon_8 PF09723.10 40 ZNF266-204 - 549 3.5e-08 33.4 75.6 1 13 8 9e+03 -3.1 0.2 10 16 133 139 132 150 0.69 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF266-204 - 549 3.5e-08 33.4 75.6 2 13 0.00027 0.3 11.2 6.3 6 38 212 251 210 253 0.83 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF266-204 - 549 3.5e-08 33.4 75.6 3 13 0.0035 3.9 7.7 1.5 6 19 240 253 239 263 0.79 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF266-204 - 549 3.5e-08 33.4 75.6 4 13 6.3e-05 0.07 13.2 4.7 6 38 268 307 267 308 0.81 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF266-204 - 549 3.5e-08 33.4 75.6 5 13 0.0056 6.2 7.0 4.0 6 36 296 333 295 336 0.78 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF266-204 - 549 3.5e-08 33.4 75.6 6 13 0.14 1.6e+02 2.5 0.4 6 16 324 334 323 340 0.88 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF266-204 - 549 3.5e-08 33.4 75.6 7 13 3.5e-05 0.04 14.0 4.8 6 38 352 391 349 392 0.81 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF266-204 - 549 3.5e-08 33.4 75.6 8 13 0.0053 5.9 7.1 5.2 6 34 380 415 379 417 0.72 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF266-204 - 549 3.5e-08 33.4 75.6 9 13 0.087 97 3.2 0.2 6 16 408 418 407 426 0.84 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF266-204 - 549 3.5e-08 33.4 75.6 10 13 0.00069 0.77 9.9 1.8 6 35 436 472 435 474 0.77 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF266-204 - 549 3.5e-08 33.4 75.6 11 13 0.0023 2.6 8.3 4.2 6 34 464 499 462 502 0.82 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF266-204 - 549 3.5e-08 33.4 75.6 12 13 0.00012 0.13 12.4 5.9 6 34 492 527 491 530 0.85 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF266-204 - 549 3.5e-08 33.4 75.6 13 13 0.0027 3.1 8.0 0.8 6 21 520 535 518 541 0.81 Zinc ribbon domain zf-trcl PF13451.6 48 ZNF266-204 - 549 4.5e-08 32.9 55.9 1 12 4.6 5.1e+03 -2.5 0.0 3 15 154 166 153 170 0.86 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF266-204 - 549 4.5e-08 32.9 55.9 2 12 5.4 6e+03 -2.8 0.0 8 16 187 195 187 197 0.83 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF266-204 - 549 4.5e-08 32.9 55.9 3 12 0.0024 2.7 7.9 0.0 3 18 210 225 208 226 0.88 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF266-204 - 549 4.5e-08 32.9 55.9 4 12 0.012 13 5.8 0.6 2 15 237 250 236 254 0.90 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF266-204 - 549 4.5e-08 32.9 55.9 5 12 0.0011 1.2 9.1 0.1 3 15 266 278 264 281 0.88 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF266-204 - 549 4.5e-08 32.9 55.9 6 12 0.17 1.9e+02 2.1 3.3 3 39 294 329 292 337 0.68 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF266-204 - 549 4.5e-08 32.9 55.9 7 12 0.0023 2.5 8.0 0.2 3 15 350 362 350 365 0.90 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF266-204 - 549 4.5e-08 32.9 55.9 8 12 0.055 61 3.6 0.1 4 14 379 389 377 394 0.84 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF266-204 - 549 4.5e-08 32.9 55.9 9 12 0.086 97 3.0 0.1 3 15 406 418 404 422 0.86 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF266-204 - 549 4.5e-08 32.9 55.9 10 12 0.033 37 4.3 0.1 3 17 434 448 432 451 0.87 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF266-204 - 549 4.5e-08 32.9 55.9 11 12 0.0075 8.4 6.4 0.3 3 16 462 475 460 477 0.90 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF266-204 - 549 4.5e-08 32.9 55.9 12 12 0.00055 0.61 10.0 3.3 3 41 490 527 488 532 0.82 Probable zinc-ribbon domain # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF266-204.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF266-204.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF266-204.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF266-204.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF266-204.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:02:50 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF266-205.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF266-205.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF266-205.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF266-205.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF266-205.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:02:51 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZNF266-206 - 549 1.7e-100 325.4 103.9 1 17 0.0065 7.3 7.2 0.0 2 24 93 115 93 117 0.86 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF266-206 - 549 1.7e-100 325.4 103.9 2 17 1.7 1.9e+03 -0.4 0.1 18 24 132 138 115 139 0.61 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF266-206 - 549 1.7e-100 325.4 103.9 3 17 1.1 1.2e+03 0.2 0.1 10 24 151 165 148 167 0.85 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF266-206 - 549 1.7e-100 325.4 103.9 4 17 0.0008 0.89 10.1 0.3 1 25 170 194 170 195 0.88 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF266-206 - 549 1.7e-100 325.4 103.9 5 17 8.3e-07 0.00094 19.5 1.7 7 25 204 222 203 223 0.90 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF266-206 - 549 1.7e-100 325.4 103.9 6 17 2.6e-11 2.9e-08 33.8 0.2 2 26 227 251 226 251 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF266-206 - 549 1.7e-100 325.4 103.9 7 17 2.1e-10 2.4e-07 30.9 1.6 2 25 255 278 254 278 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF266-206 - 549 1.7e-100 325.4 103.9 8 17 1.1e-09 1.2e-06 28.7 0.2 2 25 283 306 283 307 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF266-206 - 549 1.7e-100 325.4 103.9 9 17 4e-09 4.5e-06 26.8 0.8 2 26 311 335 310 335 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF266-206 - 549 1.7e-100 325.4 103.9 10 17 1.1e-10 1.3e-07 31.7 0.5 2 25 339 362 339 363 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF266-206 - 549 1.7e-100 325.4 103.9 11 17 2.4e-11 2.6e-08 33.9 0.5 1 25 366 390 366 391 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF266-206 - 549 1.7e-100 325.4 103.9 12 17 2.2e-11 2.5e-08 34.0 0.7 2 25 395 418 394 418 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF266-206 - 549 1.7e-100 325.4 103.9 13 17 8.8e-12 9.9e-09 35.2 0.4 1 26 422 447 422 447 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF266-206 - 549 1.7e-100 325.4 103.9 14 17 1.3e-10 1.5e-07 31.5 1.5 1 25 450 474 450 475 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF266-206 - 549 1.7e-100 325.4 103.9 15 17 7.7e-12 8.6e-09 35.4 1.1 4 25 481 502 479 503 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF266-206 - 549 1.7e-100 325.4 103.9 16 17 1.1e-11 1.2e-08 35.0 1.1 2 26 507 531 506 531 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF266-206 - 549 1.7e-100 325.4 103.9 17 17 5 5.6e+03 -1.9 0.3 2 9 535 542 534 546 0.82 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZNF266-206 - 549 1.5e-70 229.9 113.3 1 16 1.5 1.7e+03 -0.2 0.3 6 22 83 99 81 99 0.81 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF266-206 - 549 1.5e-70 229.9 113.3 2 16 1.9 2.1e+03 -0.5 0.0 5 11 133 139 132 141 0.86 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF266-206 - 549 1.5e-70 229.9 113.3 3 16 0.0002 0.22 12.0 2.5 4 23 151 178 145 178 0.82 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF266-206 - 549 1.5e-70 229.9 113.3 4 16 0.23 2.6e+02 2.4 0.0 5 17 188 200 186 201 0.88 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF266-206 - 549 1.5e-70 229.9 113.3 5 16 1e-07 0.00012 22.4 0.6 1 23 212 234 212 234 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF266-206 - 549 1.5e-70 229.9 113.3 6 16 5.7e-08 6.4e-05 23.2 3.7 1 23 240 262 240 262 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF266-206 - 549 1.5e-70 229.9 113.3 7 16 4.1e-08 4.6e-05 23.7 2.5 1 23 268 290 268 290 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF266-206 - 549 1.5e-70 229.9 113.3 8 16 6.6e-09 7.4e-06 26.1 0.4 1 23 296 318 296 318 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF266-206 - 549 1.5e-70 229.9 113.3 9 16 2.1e-07 0.00024 21.4 3.1 1 23 324 346 324 346 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF266-206 - 549 1.5e-70 229.9 113.3 10 16 9.7e-11 1.1e-07 31.9 1.0 1 23 352 374 352 374 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF266-206 - 549 1.5e-70 229.9 113.3 11 16 4.8e-08 5.4e-05 23.4 0.7 1 23 380 402 380 402 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF266-206 - 549 1.5e-70 229.9 113.3 12 16 1.9e-06 0.0021 18.4 0.1 1 23 408 430 408 430 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF266-206 - 549 1.5e-70 229.9 113.3 13 16 2.2e-09 2.4e-06 27.7 1.9 1 23 436 458 436 458 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF266-206 - 549 1.5e-70 229.9 113.3 14 16 2.5e-06 0.0028 18.0 1.8 1 23 464 486 464 486 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF266-206 - 549 1.5e-70 229.9 113.3 15 16 2.7e-07 0.00031 21.0 3.1 1 23 492 514 492 514 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF266-206 - 549 1.5e-70 229.9 113.3 16 16 1.4e-08 1.6e-05 25.1 1.5 1 23 520 542 520 542 0.99 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZNF266-206 - 549 2.7e-44 146.0 108.7 1 16 0.088 98 4.2 0.4 5 22 82 99 81 101 0.87 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF266-206 - 549 2.7e-44 146.0 108.7 2 16 4 4.5e+03 -1.0 0.0 5 11 133 139 132 144 0.79 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF266-206 - 549 2.7e-44 146.0 108.7 3 16 0.015 17 6.6 0.9 7 23 162 178 156 179 0.87 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF266-206 - 549 2.7e-44 146.0 108.7 4 16 3.5 4e+03 -0.8 0.0 5 23 188 206 187 207 0.79 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF266-206 - 549 2.7e-44 146.0 108.7 5 16 1.4e-05 0.016 16.0 0.4 1 23 212 234 212 235 0.86 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF266-206 - 549 2.7e-44 146.0 108.7 6 16 3.9e-06 0.0044 17.7 3.1 1 23 240 262 240 263 0.97 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF266-206 - 549 2.7e-44 146.0 108.7 7 16 4.1e-06 0.0045 17.7 1.9 1 23 268 290 268 291 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF266-206 - 549 2.7e-44 146.0 108.7 8 16 5.4e-06 0.006 17.3 0.4 1 23 296 318 296 319 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF266-206 - 549 2.7e-44 146.0 108.7 9 16 1.4e-06 0.0016 19.1 2.6 1 23 324 346 324 347 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF266-206 - 549 2.7e-44 146.0 108.7 10 16 1.6e-06 0.0017 19.0 0.6 1 23 352 374 352 375 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF266-206 - 549 2.7e-44 146.0 108.7 11 16 1.1e-05 0.012 16.3 0.7 1 23 380 402 380 403 0.97 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF266-206 - 549 2.7e-44 146.0 108.7 12 16 0.0002 0.22 12.4 0.1 1 23 408 430 408 431 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF266-206 - 549 2.7e-44 146.0 108.7 13 16 2.6e-06 0.0029 18.3 1.6 1 23 436 458 436 459 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF266-206 - 549 2.7e-44 146.0 108.7 14 16 0.0024 2.7 9.1 1.6 1 23 464 486 464 487 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF266-206 - 549 2.7e-44 146.0 108.7 15 16 2.3e-06 0.0026 18.5 2.4 1 23 492 514 492 515 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF266-206 - 549 2.7e-44 146.0 108.7 16 16 1.7e-07 0.00019 22.0 1.0 1 23 520 542 520 543 0.97 C2H2-type zinc finger zf-C2H2_jaz PF12171.8 27 ZNF266-206 - 549 4.8e-20 71.3 70.8 1 15 0.17 1.9e+02 2.5 0.0 5 18 144 157 144 157 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF266-206 - 549 4.8e-20 71.3 70.8 2 15 0.005 5.6 7.4 0.6 9 24 163 178 162 179 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF266-206 - 549 4.8e-20 71.3 70.8 3 15 5.7 6.4e+03 -2.4 0.0 6 15 188 197 187 199 0.78 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF266-206 - 549 4.8e-20 71.3 70.8 4 15 0.048 53 4.3 0.3 2 12 212 222 211 231 0.86 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF266-206 - 549 4.8e-20 71.3 70.8 5 15 0.0013 1.5 9.2 1.3 2 24 240 262 239 262 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF266-206 - 549 4.8e-20 71.3 70.8 6 15 1.6 1.8e+03 -0.6 0.5 2 11 268 277 267 288 0.77 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF266-206 - 549 4.8e-20 71.3 70.8 7 15 6.4e-05 0.072 13.4 0.1 2 24 296 318 295 318 0.95 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF266-206 - 549 4.8e-20 71.3 70.8 8 15 0.00045 0.5 10.7 0.6 2 21 324 343 323 344 0.87 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF266-206 - 549 4.8e-20 71.3 70.8 9 15 0.043 48 4.4 0.4 2 23 352 373 351 375 0.87 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF266-206 - 549 4.8e-20 71.3 70.8 10 15 0.00084 0.94 9.8 0.1 2 24 380 402 379 402 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF266-206 - 549 4.8e-20 71.3 70.8 11 15 0.28 3.1e+02 1.8 0.0 2 22 408 428 407 428 0.85 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF266-206 - 549 4.8e-20 71.3 70.8 12 15 6.8e-06 0.0077 16.5 0.2 2 24 436 458 435 460 0.95 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF266-206 - 549 4.8e-20 71.3 70.8 13 15 0.26 2.9e+02 1.9 0.2 2 12 464 474 463 474 0.91 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF266-206 - 549 4.8e-20 71.3 70.8 14 15 0.00022 0.25 11.7 2.4 2 24 492 514 491 514 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF266-206 - 549 4.8e-20 71.3 70.8 15 15 6.2e-07 0.0007 19.8 0.1 2 22 520 540 519 540 0.95 Zinc-finger double-stranded RNA-binding zf-C2H2_11 PF16622.5 29 ZNF266-206 - 549 3.5e-18 65.1 59.1 1 12 0.048 53 3.7 0.0 5 24 212 231 209 232 0.82 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF266-206 - 549 3.5e-18 65.1 59.1 2 12 0.0022 2.5 8.0 0.3 5 24 240 259 237 261 0.90 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF266-206 - 549 3.5e-18 65.1 59.1 3 12 1.6e-06 0.0018 18.0 0.8 5 26 268 289 265 290 0.94 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF266-206 - 549 3.5e-18 65.1 59.1 4 12 0.0048 5.3 6.9 0.1 6 24 297 315 294 317 0.88 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF266-206 - 549 3.5e-18 65.1 59.1 5 12 2.6 2.9e+03 -1.9 3.2 7 26 326 345 324 346 0.86 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF266-206 - 549 3.5e-18 65.1 59.1 6 12 0.0025 2.8 7.8 0.0 5 24 352 371 351 373 0.91 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF266-206 - 549 3.5e-18 65.1 59.1 7 12 0.014 16 5.4 0.1 6 24 381 399 379 401 0.88 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF266-206 - 549 3.5e-18 65.1 59.1 8 12 4.7e-05 0.053 13.3 0.2 6 26 409 429 406 430 0.94 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF266-206 - 549 3.5e-18 65.1 59.1 9 12 2.6e-06 0.0029 17.3 0.5 6 25 437 456 434 458 0.93 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF266-206 - 549 3.5e-18 65.1 59.1 10 12 0.057 64 3.4 0.4 7 26 466 485 463 486 0.88 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF266-206 - 549 3.5e-18 65.1 59.1 11 12 0.016 18 5.2 0.4 5 20 492 507 489 512 0.81 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF266-206 - 549 3.5e-18 65.1 59.1 12 12 0.0003 0.33 10.7 0.2 6 23 521 538 518 540 0.91 zinc-finger C2H2-type zf-C2H2_6 PF13912.6 27 ZNF266-206 - 549 4.5e-17 61.6 108.0 1 14 1.3 1.5e+03 -0.6 0.1 5 12 132 139 132 139 0.87 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF266-206 - 549 4.5e-17 61.6 108.0 2 14 1.1 1.2e+03 -0.4 1.1 17 24 171 178 170 181 0.84 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF266-206 - 549 4.5e-17 61.6 108.0 3 14 0.00022 0.25 11.4 1.0 2 24 212 234 212 235 0.81 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF266-206 - 549 4.5e-17 61.6 108.0 4 14 3.5e-05 0.039 13.9 4.2 2 24 240 262 240 265 0.95 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF266-206 - 549 4.5e-17 61.6 108.0 5 14 0.19 2.1e+02 2.0 1.1 2 11 268 277 268 290 0.91 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF266-206 - 549 4.5e-17 61.6 108.0 6 14 4.5e-05 0.05 13.6 0.9 2 25 296 319 296 321 0.95 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF266-206 - 549 4.5e-17 61.6 108.0 7 14 0.00019 0.21 11.6 0.9 2 12 324 334 324 335 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF266-206 - 549 4.5e-17 61.6 108.0 8 14 0.00057 0.64 10.1 1.1 2 25 352 375 352 377 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF266-206 - 549 4.5e-17 61.6 108.0 9 14 2.2e-05 0.024 14.6 1.1 2 24 380 402 380 405 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF266-206 - 549 4.5e-17 61.6 108.0 10 14 0.0072 8 6.6 0.2 2 24 408 430 408 433 0.91 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF266-206 - 549 4.5e-17 61.6 108.0 11 14 2.3e-05 0.026 14.5 2.3 2 26 436 460 436 461 0.95 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF266-206 - 549 4.5e-17 61.6 108.0 12 14 0.072 80 3.4 0.3 2 12 464 474 464 474 0.90 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF266-206 - 549 4.5e-17 61.6 108.0 13 14 0.00018 0.2 11.7 2.7 2 15 492 505 492 516 0.78 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF266-206 - 549 4.5e-17 61.6 108.0 14 14 1.5e-05 0.017 15.1 1.5 2 24 520 542 520 545 0.90 C2H2-type zinc finger XPA_N PF01286.18 32 ZNF266-206 - 549 5.4e-11 42.3 66.5 1 14 9.2 1e+04 -3.3 0.1 6 11 133 138 133 139 0.84 XPA protein N-terminal XPA_N PF01286.18 32 ZNF266-206 - 549 5.4e-11 42.3 66.5 2 14 2 2.2e+03 -1.2 0.0 6 14 188 196 187 197 0.85 XPA protein N-terminal XPA_N PF01286.18 32 ZNF266-206 - 549 5.4e-11 42.3 66.5 3 14 0.00057 0.64 10.1 0.0 3 18 213 228 211 230 0.90 XPA protein N-terminal XPA_N PF01286.18 32 ZNF266-206 - 549 5.4e-11 42.3 66.5 4 14 0.0022 2.5 8.2 0.8 3 14 241 252 239 257 0.89 XPA protein N-terminal XPA_N PF01286.18 32 ZNF266-206 - 549 5.4e-11 42.3 66.5 5 14 0.017 19 5.4 0.5 3 14 269 280 267 286 0.87 XPA protein N-terminal XPA_N PF01286.18 32 ZNF266-206 - 549 5.4e-11 42.3 66.5 6 14 0.034 38 4.5 0.1 3 14 297 308 295 314 0.85 XPA protein N-terminal XPA_N PF01286.18 32 ZNF266-206 - 549 5.4e-11 42.3 66.5 7 14 0.015 16 5.6 1.0 3 21 325 344 323 346 0.82 XPA protein N-terminal XPA_N PF01286.18 32 ZNF266-206 - 549 5.4e-11 42.3 66.5 8 14 0.013 15 5.8 0.1 3 12 353 362 351 369 0.89 XPA protein N-terminal XPA_N PF01286.18 32 ZNF266-206 - 549 5.4e-11 42.3 66.5 9 14 0.00089 0.99 9.5 0.2 3 14 381 392 379 398 0.86 XPA protein N-terminal XPA_N PF01286.18 32 ZNF266-206 - 549 5.4e-11 42.3 66.5 10 14 0.0089 10 6.3 0.1 3 14 409 420 407 422 0.91 XPA protein N-terminal XPA_N PF01286.18 32 ZNF266-206 - 549 5.4e-11 42.3 66.5 11 14 0.0011 1.3 9.1 0.2 3 14 437 448 435 454 0.87 XPA protein N-terminal XPA_N PF01286.18 32 ZNF266-206 - 549 5.4e-11 42.3 66.5 12 14 0.011 12 6.0 0.5 3 11 465 473 463 474 0.90 XPA protein N-terminal XPA_N PF01286.18 32 ZNF266-206 - 549 5.4e-11 42.3 66.5 13 14 0.02 22 5.2 0.3 3 14 493 504 491 507 0.88 XPA protein N-terminal XPA_N PF01286.18 32 ZNF266-206 - 549 5.4e-11 42.3 66.5 14 14 0.0016 1.7 8.7 0.5 3 14 521 532 519 539 0.87 XPA protein N-terminal zf_UBZ PF18439.1 32 ZNF266-206 - 549 3.8e-09 36.0 55.4 1 13 3 3.3e+03 -2.2 0.0 6 14 132 140 132 143 0.82 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF266-206 - 549 3.8e-09 36.0 55.4 2 13 0.04 45 3.7 0.3 3 11 212 220 210 224 0.86 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF266-206 - 549 3.8e-09 36.0 55.4 3 13 0.0025 2.9 7.6 0.8 3 20 240 258 238 259 0.90 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF266-206 - 549 3.8e-09 36.0 55.4 4 13 0.034 38 4.0 0.4 3 15 268 280 266 287 0.80 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF266-206 - 549 3.8e-09 36.0 55.4 5 13 0.00076 0.85 9.3 0.2 3 21 296 315 294 322 0.87 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF266-206 - 549 3.8e-09 36.0 55.4 6 13 0.1 1.1e+02 2.5 0.5 2 12 323 333 322 338 0.85 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF266-206 - 549 3.8e-09 36.0 55.4 7 13 0.0036 4 7.1 0.1 3 20 352 370 350 371 0.86 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF266-206 - 549 3.8e-09 36.0 55.4 8 13 0.00093 1 9.0 0.1 3 20 380 398 378 399 0.90 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF266-206 - 549 3.8e-09 36.0 55.4 9 13 0.077 86 2.9 0.0 3 15 408 420 406 427 0.81 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF266-206 - 549 3.8e-09 36.0 55.4 10 13 0.029 32 4.2 0.1 3 20 436 454 434 455 0.80 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF266-206 - 549 3.8e-09 36.0 55.4 11 13 0.048 54 3.5 0.1 3 13 464 474 462 477 0.85 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF266-206 - 549 3.8e-09 36.0 55.4 12 13 0.002 2.3 7.9 0.2 3 20 492 510 490 511 0.79 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF266-206 - 549 3.8e-09 36.0 55.4 13 13 0.0016 1.8 8.2 0.2 3 20 520 538 518 539 0.83 Ubiquitin-Binding Zinc Finger Zn-ribbon_8 PF09723.10 40 ZNF266-206 - 549 3.5e-08 33.4 75.6 1 13 8 9e+03 -3.1 0.2 10 16 133 139 132 150 0.69 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF266-206 - 549 3.5e-08 33.4 75.6 2 13 0.00027 0.3 11.2 6.3 6 38 212 251 210 253 0.83 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF266-206 - 549 3.5e-08 33.4 75.6 3 13 0.0035 3.9 7.7 1.5 6 19 240 253 239 263 0.79 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF266-206 - 549 3.5e-08 33.4 75.6 4 13 6.3e-05 0.07 13.2 4.7 6 38 268 307 267 308 0.81 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF266-206 - 549 3.5e-08 33.4 75.6 5 13 0.0056 6.2 7.0 4.0 6 36 296 333 295 336 0.78 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF266-206 - 549 3.5e-08 33.4 75.6 6 13 0.14 1.6e+02 2.5 0.4 6 16 324 334 323 340 0.88 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF266-206 - 549 3.5e-08 33.4 75.6 7 13 3.5e-05 0.04 14.0 4.8 6 38 352 391 349 392 0.81 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF266-206 - 549 3.5e-08 33.4 75.6 8 13 0.0053 5.9 7.1 5.2 6 34 380 415 379 417 0.72 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF266-206 - 549 3.5e-08 33.4 75.6 9 13 0.087 97 3.2 0.2 6 16 408 418 407 426 0.84 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF266-206 - 549 3.5e-08 33.4 75.6 10 13 0.00069 0.77 9.9 1.8 6 35 436 472 435 474 0.77 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF266-206 - 549 3.5e-08 33.4 75.6 11 13 0.0023 2.6 8.3 4.2 6 34 464 499 462 502 0.82 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF266-206 - 549 3.5e-08 33.4 75.6 12 13 0.00012 0.13 12.4 5.9 6 34 492 527 491 530 0.85 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF266-206 - 549 3.5e-08 33.4 75.6 13 13 0.0027 3.1 8.0 0.8 6 21 520 535 518 541 0.81 Zinc ribbon domain zf-trcl PF13451.6 48 ZNF266-206 - 549 4.5e-08 32.9 55.9 1 12 4.6 5.1e+03 -2.5 0.0 3 15 154 166 153 170 0.86 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF266-206 - 549 4.5e-08 32.9 55.9 2 12 5.4 6e+03 -2.8 0.0 8 16 187 195 187 197 0.83 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF266-206 - 549 4.5e-08 32.9 55.9 3 12 0.0024 2.7 7.9 0.0 3 18 210 225 208 226 0.88 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF266-206 - 549 4.5e-08 32.9 55.9 4 12 0.012 13 5.8 0.6 2 15 237 250 236 254 0.90 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF266-206 - 549 4.5e-08 32.9 55.9 5 12 0.0011 1.2 9.1 0.1 3 15 266 278 264 281 0.88 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF266-206 - 549 4.5e-08 32.9 55.9 6 12 0.17 1.9e+02 2.1 3.3 3 39 294 329 292 337 0.68 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF266-206 - 549 4.5e-08 32.9 55.9 7 12 0.0023 2.5 8.0 0.2 3 15 350 362 350 365 0.90 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF266-206 - 549 4.5e-08 32.9 55.9 8 12 0.055 61 3.6 0.1 4 14 379 389 377 394 0.84 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF266-206 - 549 4.5e-08 32.9 55.9 9 12 0.086 97 3.0 0.1 3 15 406 418 404 422 0.86 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF266-206 - 549 4.5e-08 32.9 55.9 10 12 0.033 37 4.3 0.1 3 17 434 448 432 451 0.87 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF266-206 - 549 4.5e-08 32.9 55.9 11 12 0.0075 8.4 6.4 0.3 3 16 462 475 460 477 0.90 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF266-206 - 549 4.5e-08 32.9 55.9 12 12 0.00055 0.61 10.0 3.3 3 41 490 527 488 532 0.82 Probable zinc-ribbon domain # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF266-206.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF266-206.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF266-206.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF266-206.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF266-206.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:02:51 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZNF266-207 - 616 5.8e-100 323.7 102.7 1 17 0.0079 8.4 7.0 0.0 2 24 160 182 160 184 0.86 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF266-207 - 616 5.8e-100 323.7 102.7 2 17 2 2.1e+03 -0.6 0.1 18 24 199 205 182 206 0.61 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF266-207 - 616 5.8e-100 323.7 102.7 3 17 1.3 1.4e+03 0.0 0.1 10 24 218 232 215 234 0.85 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF266-207 - 616 5.8e-100 323.7 102.7 4 17 0.00097 1 9.9 0.3 1 25 237 261 237 262 0.88 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF266-207 - 616 5.8e-100 323.7 102.7 5 17 1e-06 0.0011 19.3 1.7 7 25 271 289 270 290 0.90 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF266-207 - 616 5.8e-100 323.7 102.7 6 17 3.1e-11 3.3e-08 33.6 0.2 2 26 294 318 293 318 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF266-207 - 616 5.8e-100 323.7 102.7 7 17 2.6e-10 2.7e-07 30.7 1.6 2 25 322 345 321 345 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF266-207 - 616 5.8e-100 323.7 102.7 8 17 1.3e-09 1.4e-06 28.5 0.2 2 25 350 373 350 374 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF266-207 - 616 5.8e-100 323.7 102.7 9 17 4.9e-09 5.1e-06 26.7 0.8 2 26 378 402 377 402 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF266-207 - 616 5.8e-100 323.7 102.7 10 17 1.4e-10 1.5e-07 31.5 0.5 2 25 406 429 406 430 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF266-207 - 616 5.8e-100 323.7 102.7 11 17 2.9e-11 3e-08 33.7 0.5 1 25 433 457 433 458 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF266-207 - 616 5.8e-100 323.7 102.7 12 17 2.7e-11 2.9e-08 33.8 0.7 2 25 462 485 461 485 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF266-207 - 616 5.8e-100 323.7 102.7 13 17 1.1e-11 1.1e-08 35.1 0.4 1 26 489 514 489 514 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF266-207 - 616 5.8e-100 323.7 102.7 14 17 1.6e-10 1.7e-07 31.4 1.5 1 25 517 541 517 542 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF266-207 - 616 5.8e-100 323.7 102.7 15 17 9.3e-12 9.8e-09 35.3 1.1 4 25 548 569 546 570 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF266-207 - 616 5.8e-100 323.7 102.7 16 17 1.3e-11 1.4e-08 34.8 1.1 2 26 574 598 573 598 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF266-207 - 616 5.8e-100 323.7 102.7 17 17 6.6 7e+03 -2.2 0.2 2 9 602 609 601 612 0.84 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZNF266-207 - 616 1.1e-69 227.1 113.3 1 16 1.8 1.9e+03 -0.4 0.3 6 22 150 166 148 166 0.81 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF266-207 - 616 1.1e-69 227.1 113.3 2 16 2.3 2.4e+03 -0.7 0.0 5 11 200 206 199 208 0.86 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF266-207 - 616 1.1e-69 227.1 113.3 3 16 0.00024 0.26 11.8 2.5 4 23 218 245 212 245 0.82 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF266-207 - 616 1.1e-69 227.1 113.3 4 16 0.28 2.9e+02 2.2 0.0 5 17 255 267 253 268 0.88 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF266-207 - 616 1.1e-69 227.1 113.3 5 16 1.3e-07 0.00013 22.2 0.6 1 23 279 301 279 301 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF266-207 - 616 1.1e-69 227.1 113.3 6 16 7e-08 7.4e-05 23.0 3.7 1 23 307 329 307 329 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF266-207 - 616 1.1e-69 227.1 113.3 7 16 4.9e-08 5.2e-05 23.5 2.5 1 23 335 357 335 357 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF266-207 - 616 1.1e-69 227.1 113.3 8 16 8.1e-09 8.5e-06 25.9 0.4 1 23 363 385 363 385 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF266-207 - 616 1.1e-69 227.1 113.3 9 16 2.6e-07 0.00027 21.2 3.1 1 23 391 413 391 413 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF266-207 - 616 1.1e-69 227.1 113.3 10 16 1.2e-10 1.2e-07 31.7 1.0 1 23 419 441 419 441 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF266-207 - 616 1.1e-69 227.1 113.3 11 16 5.9e-08 6.2e-05 23.2 0.7 1 23 447 469 447 469 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF266-207 - 616 1.1e-69 227.1 113.3 12 16 2.3e-06 0.0024 18.2 0.1 1 23 475 497 475 497 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF266-207 - 616 1.1e-69 227.1 113.3 13 16 2.6e-09 2.8e-06 27.5 1.9 1 23 503 525 503 525 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF266-207 - 616 1.1e-69 227.1 113.3 14 16 3e-06 0.0032 17.8 1.8 1 23 531 553 531 553 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF266-207 - 616 1.1e-69 227.1 113.3 15 16 3.3e-07 0.00035 20.9 3.1 1 23 559 581 559 581 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF266-207 - 616 1.1e-69 227.1 113.3 16 16 1.8e-08 1.9e-05 24.9 1.5 1 23 587 609 587 609 0.99 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZNF266-207 - 616 2.5e-43 143.0 109.0 1 16 0.11 1.1e+02 4.0 0.4 5 22 149 166 148 168 0.87 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF266-207 - 616 2.5e-43 143.0 109.0 2 16 5.2 5.5e+03 -1.2 0.0 5 11 200 206 199 210 0.79 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF266-207 - 616 2.5e-43 143.0 109.0 3 16 0.019 20 6.4 0.9 7 23 229 245 223 246 0.87 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF266-207 - 616 2.5e-43 143.0 109.0 4 16 4.3 4.5e+03 -1.0 0.0 5 23 255 273 254 274 0.79 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF266-207 - 616 2.5e-43 143.0 109.0 5 16 1.7e-05 0.018 15.8 0.4 1 23 279 301 279 302 0.86 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF266-207 - 616 2.5e-43 143.0 109.0 6 16 4.8e-06 0.0051 17.6 3.1 1 23 307 329 307 330 0.97 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF266-207 - 616 2.5e-43 143.0 109.0 7 16 4.9e-06 0.0052 17.5 1.9 1 23 335 357 335 358 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF266-207 - 616 2.5e-43 143.0 109.0 8 16 6.5e-06 0.0069 17.1 0.4 1 23 363 385 363 386 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF266-207 - 616 2.5e-43 143.0 109.0 9 16 1.7e-06 0.0018 18.9 2.6 1 23 391 413 391 414 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF266-207 - 616 2.5e-43 143.0 109.0 10 16 1.9e-06 0.002 18.8 0.6 1 23 419 441 419 442 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF266-207 - 616 2.5e-43 143.0 109.0 11 16 1.4e-05 0.014 16.1 0.7 1 23 447 469 447 470 0.97 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF266-207 - 616 2.5e-43 143.0 109.0 12 16 0.00024 0.26 12.3 0.1 1 23 475 497 475 498 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF266-207 - 616 2.5e-43 143.0 109.0 13 16 3.1e-06 0.0033 18.1 1.6 1 23 503 525 503 526 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF266-207 - 616 2.5e-43 143.0 109.0 14 16 0.0029 3 8.9 1.6 1 23 531 553 531 554 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF266-207 - 616 2.5e-43 143.0 109.0 15 16 2.8e-06 0.003 18.3 2.4 1 23 559 581 559 582 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF266-207 - 616 2.5e-43 143.0 109.0 16 16 2.1e-07 0.00022 21.8 1.0 1 23 587 609 587 610 0.97 C2H2-type zinc finger KRAB PF01352.27 42 ZNF266-207 - 616 7.5e-25 86.3 0.1 1 1 1.8e-27 1.9e-24 85.0 0.1 1 42 38 79 38 79 0.98 KRAB box zf-C2H2_jaz PF12171.8 27 ZNF266-207 - 616 3e-19 68.8 70.8 1 15 0.21 2.2e+02 2.3 0.0 5 18 211 224 211 224 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF266-207 - 616 3e-19 68.8 70.8 2 15 0.006 6.4 7.2 0.6 9 24 230 245 229 246 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF266-207 - 616 3e-19 68.8 70.8 3 15 6.9 7.2e+03 -2.5 0.0 6 15 255 264 254 266 0.78 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF266-207 - 616 3e-19 68.8 70.8 4 15 0.058 61 4.1 0.3 2 12 279 289 278 298 0.86 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF266-207 - 616 3e-19 68.8 70.8 5 15 0.0016 1.7 9.0 1.3 2 24 307 329 306 329 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF266-207 - 616 3e-19 68.8 70.8 6 15 1.9 2e+03 -0.8 0.5 2 11 335 344 334 355 0.77 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF266-207 - 616 3e-19 68.8 70.8 7 15 7.8e-05 0.082 13.2 0.1 2 24 363 385 362 385 0.95 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF266-207 - 616 3e-19 68.8 70.8 8 15 0.00055 0.58 10.5 0.6 2 21 391 410 390 411 0.86 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF266-207 - 616 3e-19 68.8 70.8 9 15 0.052 55 4.2 0.4 2 23 419 440 418 442 0.87 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF266-207 - 616 3e-19 68.8 70.8 10 15 0.001 1.1 9.7 0.1 2 24 447 469 446 469 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF266-207 - 616 3e-19 68.8 70.8 11 15 0.34 3.5e+02 1.6 0.0 2 22 475 495 474 495 0.85 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF266-207 - 616 3e-19 68.8 70.8 12 15 8.3e-06 0.0088 16.3 0.2 2 24 503 525 502 527 0.95 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF266-207 - 616 3e-19 68.8 70.8 13 15 0.31 3.3e+02 1.7 0.2 2 12 531 541 530 541 0.91 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF266-207 - 616 3e-19 68.8 70.8 14 15 0.00027 0.29 11.5 2.4 2 24 559 581 558 581 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF266-207 - 616 3e-19 68.8 70.8 15 15 7.6e-07 0.0008 19.6 0.1 2 22 587 607 586 607 0.95 Zinc-finger double-stranded RNA-binding zf-C2H2_11 PF16622.5 29 ZNF266-207 - 616 1.7e-17 62.8 59.1 1 12 0.058 61 3.5 0.0 5 24 279 298 276 299 0.82 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF266-207 - 616 1.7e-17 62.8 59.1 2 12 0.0027 2.8 7.8 0.3 5 24 307 326 304 328 0.90 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF266-207 - 616 1.7e-17 62.8 59.1 3 12 2e-06 0.0021 17.8 0.8 5 26 335 356 332 357 0.94 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF266-207 - 616 1.7e-17 62.8 59.1 4 12 0.0058 6.1 6.7 0.1 6 24 364 382 361 384 0.88 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF266-207 - 616 1.7e-17 62.8 59.1 5 12 3.2 3.3e+03 -2.1 3.2 7 26 393 412 391 413 0.86 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF266-207 - 616 1.7e-17 62.8 59.1 6 12 0.003 3.2 7.6 0.0 5 24 419 438 418 440 0.91 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF266-207 - 616 1.7e-17 62.8 59.1 7 12 0.017 18 5.2 0.1 6 24 448 466 446 468 0.88 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF266-207 - 616 1.7e-17 62.8 59.1 8 12 5.7e-05 0.061 13.1 0.2 6 26 476 496 473 497 0.94 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF266-207 - 616 1.7e-17 62.8 59.1 9 12 3.1e-06 0.0033 17.1 0.5 6 25 504 523 501 525 0.93 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF266-207 - 616 1.7e-17 62.8 59.1 10 12 0.07 74 3.2 0.4 7 26 533 552 530 553 0.88 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF266-207 - 616 1.7e-17 62.8 59.1 11 12 0.019 20 5.0 0.4 5 20 559 574 556 579 0.81 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF266-207 - 616 1.7e-17 62.8 59.1 12 12 0.00036 0.38 10.6 0.2 6 23 588 605 585 607 0.91 zinc-finger C2H2-type zf-C2H2_6 PF13912.6 27 ZNF266-207 - 616 3.7e-17 61.9 105.1 1 14 1.6 1.7e+03 -0.8 0.1 5 12 199 206 199 206 0.87 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF266-207 - 616 3.7e-17 61.9 105.1 2 14 1.3 1.4e+03 -0.6 1.1 17 24 238 245 237 248 0.84 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF266-207 - 616 3.7e-17 61.9 105.1 3 14 0.00027 0.28 11.2 1.0 2 24 279 301 279 302 0.81 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF266-207 - 616 3.7e-17 61.9 105.1 4 14 4.3e-05 0.045 13.8 4.2 2 24 307 329 307 332 0.95 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF266-207 - 616 3.7e-17 61.9 105.1 5 14 0.23 2.4e+02 1.9 1.1 2 11 335 344 335 357 0.91 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF266-207 - 616 3.7e-17 61.9 105.1 6 14 5.5e-05 0.057 13.4 0.9 2 25 363 386 363 388 0.95 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF266-207 - 616 3.7e-17 61.9 105.1 7 14 0.00023 0.24 11.5 0.9 2 12 391 401 391 402 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF266-207 - 616 3.7e-17 61.9 105.1 8 14 0.0007 0.73 9.9 1.1 2 25 419 442 419 444 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF266-207 - 616 3.7e-17 61.9 105.1 9 14 2.6e-05 0.028 14.4 1.1 2 24 447 469 447 472 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF266-207 - 616 3.7e-17 61.9 105.1 10 14 0.0087 9.2 6.4 0.2 2 24 475 497 475 500 0.91 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF266-207 - 616 3.7e-17 61.9 105.1 11 14 2.8e-05 0.03 14.3 2.3 2 26 503 527 503 528 0.95 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF266-207 - 616 3.7e-17 61.9 105.1 12 14 0.086 91 3.2 0.3 2 12 531 541 531 541 0.90 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF266-207 - 616 3.7e-17 61.9 105.1 13 14 0.00022 0.23 11.5 2.7 2 15 559 572 559 583 0.79 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF266-207 - 616 3.7e-17 61.9 105.1 14 14 1.8e-05 0.019 15.0 1.5 2 24 587 609 587 612 0.90 C2H2-type zinc finger XPA_N PF01286.18 32 ZNF266-207 - 616 2.7e-10 40.1 66.4 1 13 2.4 2.5e+03 -1.4 0.0 6 14 255 263 254 264 0.85 XPA protein N-terminal XPA_N PF01286.18 32 ZNF266-207 - 616 2.7e-10 40.1 66.4 2 13 0.00069 0.73 9.9 0.0 3 18 280 295 278 297 0.90 XPA protein N-terminal XPA_N PF01286.18 32 ZNF266-207 - 616 2.7e-10 40.1 66.4 3 13 0.0027 2.8 8.0 0.8 3 14 308 319 306 324 0.89 XPA protein N-terminal XPA_N PF01286.18 32 ZNF266-207 - 616 2.7e-10 40.1 66.4 4 13 0.021 22 5.2 0.5 3 14 336 347 334 353 0.87 XPA protein N-terminal XPA_N PF01286.18 32 ZNF266-207 - 616 2.7e-10 40.1 66.4 5 13 0.041 43 4.3 0.1 3 14 364 375 362 381 0.85 XPA protein N-terminal XPA_N PF01286.18 32 ZNF266-207 - 616 2.7e-10 40.1 66.4 6 13 0.018 19 5.4 1.0 3 21 392 411 390 413 0.82 XPA protein N-terminal XPA_N PF01286.18 32 ZNF266-207 - 616 2.7e-10 40.1 66.4 7 13 0.016 17 5.6 0.1 3 12 420 429 418 436 0.89 XPA protein N-terminal XPA_N PF01286.18 32 ZNF266-207 - 616 2.7e-10 40.1 66.4 8 13 0.0011 1.1 9.3 0.2 3 14 448 459 446 465 0.86 XPA protein N-terminal XPA_N PF01286.18 32 ZNF266-207 - 616 2.7e-10 40.1 66.4 9 13 0.011 11 6.1 0.1 3 14 476 487 474 489 0.91 XPA protein N-terminal XPA_N PF01286.18 32 ZNF266-207 - 616 2.7e-10 40.1 66.4 10 13 0.0014 1.5 9.0 0.2 3 14 504 515 502 521 0.87 XPA protein N-terminal XPA_N PF01286.18 32 ZNF266-207 - 616 2.7e-10 40.1 66.4 11 13 0.013 14 5.9 0.5 3 11 532 540 530 541 0.90 XPA protein N-terminal XPA_N PF01286.18 32 ZNF266-207 - 616 2.7e-10 40.1 66.4 12 13 0.024 25 5.0 0.3 3 14 560 571 558 574 0.88 XPA protein N-terminal XPA_N PF01286.18 32 ZNF266-207 - 616 2.7e-10 40.1 66.4 13 13 0.0019 2 8.5 0.5 3 14 588 599 586 606 0.87 XPA protein N-terminal Zn-ribbon_8 PF09723.10 40 ZNF266-207 - 616 9e-09 35.3 72.1 1 13 9.3 9.8e+03 -3.2 0.1 10 16 200 206 199 216 0.71 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF266-207 - 616 9e-09 35.3 72.1 2 13 0.00032 0.34 11.1 6.3 6 38 279 318 277 320 0.83 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF266-207 - 616 9e-09 35.3 72.1 3 13 0.004 4.3 7.5 1.4 6 19 307 320 306 330 0.79 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF266-207 - 616 9e-09 35.3 72.1 4 13 7.3e-05 0.077 13.1 4.6 6 38 335 374 334 375 0.81 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF266-207 - 616 9e-09 35.3 72.1 5 13 0.0076 8 6.7 4.1 6 35 363 399 362 402 0.77 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF266-207 - 616 9e-09 35.3 72.1 6 13 0.16 1.7e+02 2.4 0.4 6 16 391 401 390 408 0.87 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF266-207 - 616 9e-09 35.3 72.1 7 13 4.3e-05 0.045 13.9 4.7 6 38 419 458 416 459 0.81 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF266-207 - 616 9e-09 35.3 72.1 8 13 0.0044 4.7 7.4 4.9 6 34 447 482 446 485 0.72 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF266-207 - 616 9e-09 35.3 72.1 9 13 0.1 1.1e+02 3.0 0.2 6 16 475 485 473 493 0.85 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF266-207 - 616 9e-09 35.3 72.1 10 13 0.00076 0.8 9.9 1.8 6 35 503 539 502 543 0.78 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF266-207 - 616 9e-09 35.3 72.1 11 13 0.0031 3.3 7.9 4.3 6 34 531 566 530 569 0.82 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF266-207 - 616 9e-09 35.3 72.1 12 13 0.00016 0.17 12.0 6.1 6 34 559 594 558 597 0.85 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF266-207 - 616 9e-09 35.3 72.1 13 13 0.0034 3.5 7.8 0.8 6 21 587 602 586 608 0.80 Zinc ribbon domain zf_UBZ PF18439.1 32 ZNF266-207 - 616 1.9e-08 33.7 55.4 1 13 4 4.2e+03 -2.6 0.0 6 13 199 206 199 209 0.82 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF266-207 - 616 1.9e-08 33.7 55.4 2 13 0.049 52 3.6 0.3 3 11 279 287 277 291 0.86 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF266-207 - 616 1.9e-08 33.7 55.4 3 13 0.0031 3.3 7.4 0.8 3 20 307 325 305 326 0.90 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF266-207 - 616 1.9e-08 33.7 55.4 4 13 0.041 44 3.8 0.4 3 15 335 347 333 354 0.80 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF266-207 - 616 1.9e-08 33.7 55.4 5 13 0.00092 0.97 9.1 0.2 3 21 363 382 361 389 0.87 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF266-207 - 616 1.9e-08 33.7 55.4 6 13 0.12 1.3e+02 2.3 0.5 2 12 390 400 389 405 0.85 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF266-207 - 616 1.9e-08 33.7 55.4 7 13 0.0043 4.6 6.9 0.1 3 20 419 437 417 438 0.86 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF266-207 - 616 1.9e-08 33.7 55.4 8 13 0.0011 1.2 8.8 0.1 3 20 447 465 445 466 0.90 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF266-207 - 616 1.9e-08 33.7 55.4 9 13 0.093 98 2.7 0.0 3 15 475 487 473 494 0.81 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF266-207 - 616 1.9e-08 33.7 55.4 10 13 0.035 37 4.0 0.1 3 20 503 521 501 522 0.80 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF266-207 - 616 1.9e-08 33.7 55.4 11 13 0.058 61 3.3 0.1 3 13 531 541 529 544 0.85 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF266-207 - 616 1.9e-08 33.7 55.4 12 13 0.0025 2.6 7.7 0.2 3 20 559 577 557 578 0.79 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF266-207 - 616 1.9e-08 33.7 55.4 13 13 0.0019 2 8.1 0.2 3 20 587 605 585 606 0.83 Ubiquitin-Binding Zinc Finger zf-trcl PF13451.6 48 ZNF266-207 - 616 1.8e-07 31.0 55.7 1 12 5.8 6.2e+03 -2.8 0.0 3 15 221 233 220 236 0.86 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF266-207 - 616 1.8e-07 31.0 55.7 2 12 6.5 6.8e+03 -2.9 0.0 8 16 254 262 254 264 0.83 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF266-207 - 616 1.8e-07 31.0 55.7 3 12 0.0029 3.1 7.8 0.0 3 18 277 292 275 293 0.88 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF266-207 - 616 1.8e-07 31.0 55.7 4 12 0.014 15 5.6 0.6 2 15 304 317 303 321 0.90 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF266-207 - 616 1.8e-07 31.0 55.7 5 12 0.0013 1.4 8.9 0.1 3 15 333 345 331 348 0.88 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF266-207 - 616 1.8e-07 31.0 55.7 6 12 0.18 1.9e+02 2.0 3.2 3 39 361 396 359 404 0.68 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF266-207 - 616 1.8e-07 31.0 55.7 7 12 0.0027 2.9 7.9 0.2 3 15 417 429 417 432 0.90 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF266-207 - 616 1.8e-07 31.0 55.7 8 12 0.066 70 3.4 0.1 4 14 446 456 444 461 0.84 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF266-207 - 616 1.8e-07 31.0 55.7 9 12 0.1 1.1e+02 2.8 0.1 3 15 473 485 471 489 0.86 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF266-207 - 616 1.8e-07 31.0 55.7 10 12 0.04 42 4.1 0.1 3 17 501 515 499 518 0.87 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF266-207 - 616 1.8e-07 31.0 55.7 11 12 0.009 9.5 6.2 0.3 3 16 529 542 527 544 0.90 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF266-207 - 616 1.8e-07 31.0 55.7 12 12 0.0007 0.74 9.8 3.3 3 41 557 594 555 598 0.82 Probable zinc-ribbon domain # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF266-207.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF266-207.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF266-207.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF266-207.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF266-207.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:02:52 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZNF266-208 - 549 1.7e-100 325.4 103.9 1 17 0.0065 7.3 7.2 0.0 2 24 93 115 93 117 0.86 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF266-208 - 549 1.7e-100 325.4 103.9 2 17 1.7 1.9e+03 -0.4 0.1 18 24 132 138 115 139 0.61 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF266-208 - 549 1.7e-100 325.4 103.9 3 17 1.1 1.2e+03 0.2 0.1 10 24 151 165 148 167 0.85 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF266-208 - 549 1.7e-100 325.4 103.9 4 17 0.0008 0.89 10.1 0.3 1 25 170 194 170 195 0.88 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF266-208 - 549 1.7e-100 325.4 103.9 5 17 8.3e-07 0.00094 19.5 1.7 7 25 204 222 203 223 0.90 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF266-208 - 549 1.7e-100 325.4 103.9 6 17 2.6e-11 2.9e-08 33.8 0.2 2 26 227 251 226 251 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF266-208 - 549 1.7e-100 325.4 103.9 7 17 2.1e-10 2.4e-07 30.9 1.6 2 25 255 278 254 278 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF266-208 - 549 1.7e-100 325.4 103.9 8 17 1.1e-09 1.2e-06 28.7 0.2 2 25 283 306 283 307 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF266-208 - 549 1.7e-100 325.4 103.9 9 17 4e-09 4.5e-06 26.8 0.8 2 26 311 335 310 335 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF266-208 - 549 1.7e-100 325.4 103.9 10 17 1.1e-10 1.3e-07 31.7 0.5 2 25 339 362 339 363 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF266-208 - 549 1.7e-100 325.4 103.9 11 17 2.4e-11 2.6e-08 33.9 0.5 1 25 366 390 366 391 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF266-208 - 549 1.7e-100 325.4 103.9 12 17 2.2e-11 2.5e-08 34.0 0.7 2 25 395 418 394 418 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF266-208 - 549 1.7e-100 325.4 103.9 13 17 8.8e-12 9.9e-09 35.2 0.4 1 26 422 447 422 447 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF266-208 - 549 1.7e-100 325.4 103.9 14 17 1.3e-10 1.5e-07 31.5 1.5 1 25 450 474 450 475 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF266-208 - 549 1.7e-100 325.4 103.9 15 17 7.7e-12 8.6e-09 35.4 1.1 4 25 481 502 479 503 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF266-208 - 549 1.7e-100 325.4 103.9 16 17 1.1e-11 1.2e-08 35.0 1.1 2 26 507 531 506 531 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF266-208 - 549 1.7e-100 325.4 103.9 17 17 5 5.6e+03 -1.9 0.3 2 9 535 542 534 546 0.82 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZNF266-208 - 549 1.5e-70 229.9 113.3 1 16 1.5 1.7e+03 -0.2 0.3 6 22 83 99 81 99 0.81 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF266-208 - 549 1.5e-70 229.9 113.3 2 16 1.9 2.1e+03 -0.5 0.0 5 11 133 139 132 141 0.86 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF266-208 - 549 1.5e-70 229.9 113.3 3 16 0.0002 0.22 12.0 2.5 4 23 151 178 145 178 0.82 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF266-208 - 549 1.5e-70 229.9 113.3 4 16 0.23 2.6e+02 2.4 0.0 5 17 188 200 186 201 0.88 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF266-208 - 549 1.5e-70 229.9 113.3 5 16 1e-07 0.00012 22.4 0.6 1 23 212 234 212 234 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF266-208 - 549 1.5e-70 229.9 113.3 6 16 5.7e-08 6.4e-05 23.2 3.7 1 23 240 262 240 262 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF266-208 - 549 1.5e-70 229.9 113.3 7 16 4.1e-08 4.6e-05 23.7 2.5 1 23 268 290 268 290 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF266-208 - 549 1.5e-70 229.9 113.3 8 16 6.6e-09 7.4e-06 26.1 0.4 1 23 296 318 296 318 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF266-208 - 549 1.5e-70 229.9 113.3 9 16 2.1e-07 0.00024 21.4 3.1 1 23 324 346 324 346 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF266-208 - 549 1.5e-70 229.9 113.3 10 16 9.7e-11 1.1e-07 31.9 1.0 1 23 352 374 352 374 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF266-208 - 549 1.5e-70 229.9 113.3 11 16 4.8e-08 5.4e-05 23.4 0.7 1 23 380 402 380 402 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF266-208 - 549 1.5e-70 229.9 113.3 12 16 1.9e-06 0.0021 18.4 0.1 1 23 408 430 408 430 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF266-208 - 549 1.5e-70 229.9 113.3 13 16 2.2e-09 2.4e-06 27.7 1.9 1 23 436 458 436 458 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF266-208 - 549 1.5e-70 229.9 113.3 14 16 2.5e-06 0.0028 18.0 1.8 1 23 464 486 464 486 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF266-208 - 549 1.5e-70 229.9 113.3 15 16 2.7e-07 0.00031 21.0 3.1 1 23 492 514 492 514 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF266-208 - 549 1.5e-70 229.9 113.3 16 16 1.4e-08 1.6e-05 25.1 1.5 1 23 520 542 520 542 0.99 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZNF266-208 - 549 2.7e-44 146.0 108.7 1 16 0.088 98 4.2 0.4 5 22 82 99 81 101 0.87 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF266-208 - 549 2.7e-44 146.0 108.7 2 16 4 4.5e+03 -1.0 0.0 5 11 133 139 132 144 0.79 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF266-208 - 549 2.7e-44 146.0 108.7 3 16 0.015 17 6.6 0.9 7 23 162 178 156 179 0.87 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF266-208 - 549 2.7e-44 146.0 108.7 4 16 3.5 4e+03 -0.8 0.0 5 23 188 206 187 207 0.79 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF266-208 - 549 2.7e-44 146.0 108.7 5 16 1.4e-05 0.016 16.0 0.4 1 23 212 234 212 235 0.86 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF266-208 - 549 2.7e-44 146.0 108.7 6 16 3.9e-06 0.0044 17.7 3.1 1 23 240 262 240 263 0.97 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF266-208 - 549 2.7e-44 146.0 108.7 7 16 4.1e-06 0.0045 17.7 1.9 1 23 268 290 268 291 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF266-208 - 549 2.7e-44 146.0 108.7 8 16 5.4e-06 0.006 17.3 0.4 1 23 296 318 296 319 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF266-208 - 549 2.7e-44 146.0 108.7 9 16 1.4e-06 0.0016 19.1 2.6 1 23 324 346 324 347 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF266-208 - 549 2.7e-44 146.0 108.7 10 16 1.6e-06 0.0017 19.0 0.6 1 23 352 374 352 375 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF266-208 - 549 2.7e-44 146.0 108.7 11 16 1.1e-05 0.012 16.3 0.7 1 23 380 402 380 403 0.97 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF266-208 - 549 2.7e-44 146.0 108.7 12 16 0.0002 0.22 12.4 0.1 1 23 408 430 408 431 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF266-208 - 549 2.7e-44 146.0 108.7 13 16 2.6e-06 0.0029 18.3 1.6 1 23 436 458 436 459 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF266-208 - 549 2.7e-44 146.0 108.7 14 16 0.0024 2.7 9.1 1.6 1 23 464 486 464 487 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF266-208 - 549 2.7e-44 146.0 108.7 15 16 2.3e-06 0.0026 18.5 2.4 1 23 492 514 492 515 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF266-208 - 549 2.7e-44 146.0 108.7 16 16 1.7e-07 0.00019 22.0 1.0 1 23 520 542 520 543 0.97 C2H2-type zinc finger zf-C2H2_jaz PF12171.8 27 ZNF266-208 - 549 4.8e-20 71.3 70.8 1 15 0.17 1.9e+02 2.5 0.0 5 18 144 157 144 157 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF266-208 - 549 4.8e-20 71.3 70.8 2 15 0.005 5.6 7.4 0.6 9 24 163 178 162 179 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF266-208 - 549 4.8e-20 71.3 70.8 3 15 5.7 6.4e+03 -2.4 0.0 6 15 188 197 187 199 0.78 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF266-208 - 549 4.8e-20 71.3 70.8 4 15 0.048 53 4.3 0.3 2 12 212 222 211 231 0.86 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF266-208 - 549 4.8e-20 71.3 70.8 5 15 0.0013 1.5 9.2 1.3 2 24 240 262 239 262 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF266-208 - 549 4.8e-20 71.3 70.8 6 15 1.6 1.8e+03 -0.6 0.5 2 11 268 277 267 288 0.77 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF266-208 - 549 4.8e-20 71.3 70.8 7 15 6.4e-05 0.072 13.4 0.1 2 24 296 318 295 318 0.95 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF266-208 - 549 4.8e-20 71.3 70.8 8 15 0.00045 0.5 10.7 0.6 2 21 324 343 323 344 0.87 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF266-208 - 549 4.8e-20 71.3 70.8 9 15 0.043 48 4.4 0.4 2 23 352 373 351 375 0.87 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF266-208 - 549 4.8e-20 71.3 70.8 10 15 0.00084 0.94 9.8 0.1 2 24 380 402 379 402 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF266-208 - 549 4.8e-20 71.3 70.8 11 15 0.28 3.1e+02 1.8 0.0 2 22 408 428 407 428 0.85 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF266-208 - 549 4.8e-20 71.3 70.8 12 15 6.8e-06 0.0077 16.5 0.2 2 24 436 458 435 460 0.95 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF266-208 - 549 4.8e-20 71.3 70.8 13 15 0.26 2.9e+02 1.9 0.2 2 12 464 474 463 474 0.91 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF266-208 - 549 4.8e-20 71.3 70.8 14 15 0.00022 0.25 11.7 2.4 2 24 492 514 491 514 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF266-208 - 549 4.8e-20 71.3 70.8 15 15 6.2e-07 0.0007 19.8 0.1 2 22 520 540 519 540 0.95 Zinc-finger double-stranded RNA-binding zf-C2H2_11 PF16622.5 29 ZNF266-208 - 549 3.5e-18 65.1 59.1 1 12 0.048 53 3.7 0.0 5 24 212 231 209 232 0.82 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF266-208 - 549 3.5e-18 65.1 59.1 2 12 0.0022 2.5 8.0 0.3 5 24 240 259 237 261 0.90 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF266-208 - 549 3.5e-18 65.1 59.1 3 12 1.6e-06 0.0018 18.0 0.8 5 26 268 289 265 290 0.94 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF266-208 - 549 3.5e-18 65.1 59.1 4 12 0.0048 5.3 6.9 0.1 6 24 297 315 294 317 0.88 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF266-208 - 549 3.5e-18 65.1 59.1 5 12 2.6 2.9e+03 -1.9 3.2 7 26 326 345 324 346 0.86 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF266-208 - 549 3.5e-18 65.1 59.1 6 12 0.0025 2.8 7.8 0.0 5 24 352 371 351 373 0.91 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF266-208 - 549 3.5e-18 65.1 59.1 7 12 0.014 16 5.4 0.1 6 24 381 399 379 401 0.88 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF266-208 - 549 3.5e-18 65.1 59.1 8 12 4.7e-05 0.053 13.3 0.2 6 26 409 429 406 430 0.94 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF266-208 - 549 3.5e-18 65.1 59.1 9 12 2.6e-06 0.0029 17.3 0.5 6 25 437 456 434 458 0.93 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF266-208 - 549 3.5e-18 65.1 59.1 10 12 0.057 64 3.4 0.4 7 26 466 485 463 486 0.88 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF266-208 - 549 3.5e-18 65.1 59.1 11 12 0.016 18 5.2 0.4 5 20 492 507 489 512 0.81 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF266-208 - 549 3.5e-18 65.1 59.1 12 12 0.0003 0.33 10.7 0.2 6 23 521 538 518 540 0.91 zinc-finger C2H2-type zf-C2H2_6 PF13912.6 27 ZNF266-208 - 549 4.5e-17 61.6 108.0 1 14 1.3 1.5e+03 -0.6 0.1 5 12 132 139 132 139 0.87 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF266-208 - 549 4.5e-17 61.6 108.0 2 14 1.1 1.2e+03 -0.4 1.1 17 24 171 178 170 181 0.84 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF266-208 - 549 4.5e-17 61.6 108.0 3 14 0.00022 0.25 11.4 1.0 2 24 212 234 212 235 0.81 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF266-208 - 549 4.5e-17 61.6 108.0 4 14 3.5e-05 0.039 13.9 4.2 2 24 240 262 240 265 0.95 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF266-208 - 549 4.5e-17 61.6 108.0 5 14 0.19 2.1e+02 2.0 1.1 2 11 268 277 268 290 0.91 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF266-208 - 549 4.5e-17 61.6 108.0 6 14 4.5e-05 0.05 13.6 0.9 2 25 296 319 296 321 0.95 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF266-208 - 549 4.5e-17 61.6 108.0 7 14 0.00019 0.21 11.6 0.9 2 12 324 334 324 335 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF266-208 - 549 4.5e-17 61.6 108.0 8 14 0.00057 0.64 10.1 1.1 2 25 352 375 352 377 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF266-208 - 549 4.5e-17 61.6 108.0 9 14 2.2e-05 0.024 14.6 1.1 2 24 380 402 380 405 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF266-208 - 549 4.5e-17 61.6 108.0 10 14 0.0072 8 6.6 0.2 2 24 408 430 408 433 0.91 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF266-208 - 549 4.5e-17 61.6 108.0 11 14 2.3e-05 0.026 14.5 2.3 2 26 436 460 436 461 0.95 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF266-208 - 549 4.5e-17 61.6 108.0 12 14 0.072 80 3.4 0.3 2 12 464 474 464 474 0.90 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF266-208 - 549 4.5e-17 61.6 108.0 13 14 0.00018 0.2 11.7 2.7 2 15 492 505 492 516 0.78 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF266-208 - 549 4.5e-17 61.6 108.0 14 14 1.5e-05 0.017 15.1 1.5 2 24 520 542 520 545 0.90 C2H2-type zinc finger XPA_N PF01286.18 32 ZNF266-208 - 549 5.4e-11 42.3 66.5 1 14 9.2 1e+04 -3.3 0.1 6 11 133 138 133 139 0.84 XPA protein N-terminal XPA_N PF01286.18 32 ZNF266-208 - 549 5.4e-11 42.3 66.5 2 14 2 2.2e+03 -1.2 0.0 6 14 188 196 187 197 0.85 XPA protein N-terminal XPA_N PF01286.18 32 ZNF266-208 - 549 5.4e-11 42.3 66.5 3 14 0.00057 0.64 10.1 0.0 3 18 213 228 211 230 0.90 XPA protein N-terminal XPA_N PF01286.18 32 ZNF266-208 - 549 5.4e-11 42.3 66.5 4 14 0.0022 2.5 8.2 0.8 3 14 241 252 239 257 0.89 XPA protein N-terminal XPA_N PF01286.18 32 ZNF266-208 - 549 5.4e-11 42.3 66.5 5 14 0.017 19 5.4 0.5 3 14 269 280 267 286 0.87 XPA protein N-terminal XPA_N PF01286.18 32 ZNF266-208 - 549 5.4e-11 42.3 66.5 6 14 0.034 38 4.5 0.1 3 14 297 308 295 314 0.85 XPA protein N-terminal XPA_N PF01286.18 32 ZNF266-208 - 549 5.4e-11 42.3 66.5 7 14 0.015 16 5.6 1.0 3 21 325 344 323 346 0.82 XPA protein N-terminal XPA_N PF01286.18 32 ZNF266-208 - 549 5.4e-11 42.3 66.5 8 14 0.013 15 5.8 0.1 3 12 353 362 351 369 0.89 XPA protein N-terminal XPA_N PF01286.18 32 ZNF266-208 - 549 5.4e-11 42.3 66.5 9 14 0.00089 0.99 9.5 0.2 3 14 381 392 379 398 0.86 XPA protein N-terminal XPA_N PF01286.18 32 ZNF266-208 - 549 5.4e-11 42.3 66.5 10 14 0.0089 10 6.3 0.1 3 14 409 420 407 422 0.91 XPA protein N-terminal XPA_N PF01286.18 32 ZNF266-208 - 549 5.4e-11 42.3 66.5 11 14 0.0011 1.3 9.1 0.2 3 14 437 448 435 454 0.87 XPA protein N-terminal XPA_N PF01286.18 32 ZNF266-208 - 549 5.4e-11 42.3 66.5 12 14 0.011 12 6.0 0.5 3 11 465 473 463 474 0.90 XPA protein N-terminal XPA_N PF01286.18 32 ZNF266-208 - 549 5.4e-11 42.3 66.5 13 14 0.02 22 5.2 0.3 3 14 493 504 491 507 0.88 XPA protein N-terminal XPA_N PF01286.18 32 ZNF266-208 - 549 5.4e-11 42.3 66.5 14 14 0.0016 1.7 8.7 0.5 3 14 521 532 519 539 0.87 XPA protein N-terminal zf_UBZ PF18439.1 32 ZNF266-208 - 549 3.8e-09 36.0 55.4 1 13 3 3.3e+03 -2.2 0.0 6 14 132 140 132 143 0.82 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF266-208 - 549 3.8e-09 36.0 55.4 2 13 0.04 45 3.7 0.3 3 11 212 220 210 224 0.86 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF266-208 - 549 3.8e-09 36.0 55.4 3 13 0.0025 2.9 7.6 0.8 3 20 240 258 238 259 0.90 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF266-208 - 549 3.8e-09 36.0 55.4 4 13 0.034 38 4.0 0.4 3 15 268 280 266 287 0.80 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF266-208 - 549 3.8e-09 36.0 55.4 5 13 0.00076 0.85 9.3 0.2 3 21 296 315 294 322 0.87 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF266-208 - 549 3.8e-09 36.0 55.4 6 13 0.1 1.1e+02 2.5 0.5 2 12 323 333 322 338 0.85 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF266-208 - 549 3.8e-09 36.0 55.4 7 13 0.0036 4 7.1 0.1 3 20 352 370 350 371 0.86 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF266-208 - 549 3.8e-09 36.0 55.4 8 13 0.00093 1 9.0 0.1 3 20 380 398 378 399 0.90 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF266-208 - 549 3.8e-09 36.0 55.4 9 13 0.077 86 2.9 0.0 3 15 408 420 406 427 0.81 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF266-208 - 549 3.8e-09 36.0 55.4 10 13 0.029 32 4.2 0.1 3 20 436 454 434 455 0.80 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF266-208 - 549 3.8e-09 36.0 55.4 11 13 0.048 54 3.5 0.1 3 13 464 474 462 477 0.85 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF266-208 - 549 3.8e-09 36.0 55.4 12 13 0.002 2.3 7.9 0.2 3 20 492 510 490 511 0.79 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF266-208 - 549 3.8e-09 36.0 55.4 13 13 0.0016 1.8 8.2 0.2 3 20 520 538 518 539 0.83 Ubiquitin-Binding Zinc Finger Zn-ribbon_8 PF09723.10 40 ZNF266-208 - 549 3.5e-08 33.4 75.6 1 13 8 9e+03 -3.1 0.2 10 16 133 139 132 150 0.69 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF266-208 - 549 3.5e-08 33.4 75.6 2 13 0.00027 0.3 11.2 6.3 6 38 212 251 210 253 0.83 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF266-208 - 549 3.5e-08 33.4 75.6 3 13 0.0035 3.9 7.7 1.5 6 19 240 253 239 263 0.79 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF266-208 - 549 3.5e-08 33.4 75.6 4 13 6.3e-05 0.07 13.2 4.7 6 38 268 307 267 308 0.81 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF266-208 - 549 3.5e-08 33.4 75.6 5 13 0.0056 6.2 7.0 4.0 6 36 296 333 295 336 0.78 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF266-208 - 549 3.5e-08 33.4 75.6 6 13 0.14 1.6e+02 2.5 0.4 6 16 324 334 323 340 0.88 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF266-208 - 549 3.5e-08 33.4 75.6 7 13 3.5e-05 0.04 14.0 4.8 6 38 352 391 349 392 0.81 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF266-208 - 549 3.5e-08 33.4 75.6 8 13 0.0053 5.9 7.1 5.2 6 34 380 415 379 417 0.72 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF266-208 - 549 3.5e-08 33.4 75.6 9 13 0.087 97 3.2 0.2 6 16 408 418 407 426 0.84 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF266-208 - 549 3.5e-08 33.4 75.6 10 13 0.00069 0.77 9.9 1.8 6 35 436 472 435 474 0.77 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF266-208 - 549 3.5e-08 33.4 75.6 11 13 0.0023 2.6 8.3 4.2 6 34 464 499 462 502 0.82 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF266-208 - 549 3.5e-08 33.4 75.6 12 13 0.00012 0.13 12.4 5.9 6 34 492 527 491 530 0.85 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF266-208 - 549 3.5e-08 33.4 75.6 13 13 0.0027 3.1 8.0 0.8 6 21 520 535 518 541 0.81 Zinc ribbon domain zf-trcl PF13451.6 48 ZNF266-208 - 549 4.5e-08 32.9 55.9 1 12 4.6 5.1e+03 -2.5 0.0 3 15 154 166 153 170 0.86 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF266-208 - 549 4.5e-08 32.9 55.9 2 12 5.4 6e+03 -2.8 0.0 8 16 187 195 187 197 0.83 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF266-208 - 549 4.5e-08 32.9 55.9 3 12 0.0024 2.7 7.9 0.0 3 18 210 225 208 226 0.88 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF266-208 - 549 4.5e-08 32.9 55.9 4 12 0.012 13 5.8 0.6 2 15 237 250 236 254 0.90 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF266-208 - 549 4.5e-08 32.9 55.9 5 12 0.0011 1.2 9.1 0.1 3 15 266 278 264 281 0.88 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF266-208 - 549 4.5e-08 32.9 55.9 6 12 0.17 1.9e+02 2.1 3.3 3 39 294 329 292 337 0.68 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF266-208 - 549 4.5e-08 32.9 55.9 7 12 0.0023 2.5 8.0 0.2 3 15 350 362 350 365 0.90 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF266-208 - 549 4.5e-08 32.9 55.9 8 12 0.055 61 3.6 0.1 4 14 379 389 377 394 0.84 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF266-208 - 549 4.5e-08 32.9 55.9 9 12 0.086 97 3.0 0.1 3 15 406 418 404 422 0.86 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF266-208 - 549 4.5e-08 32.9 55.9 10 12 0.033 37 4.3 0.1 3 17 434 448 432 451 0.87 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF266-208 - 549 4.5e-08 32.9 55.9 11 12 0.0075 8.4 6.4 0.3 3 16 462 475 460 477 0.90 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF266-208 - 549 4.5e-08 32.9 55.9 12 12 0.00055 0.61 10.0 3.3 3 41 490 527 488 532 0.82 Probable zinc-ribbon domain # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF266-208.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF266-208.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF266-208.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF266-208.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF266-208.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:02:52 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZNF267-201 - 743 4.8e-99 320.8 138.5 1 19 7.1 9.1e+03 -2.6 0.0 11 17 212 218 209 220 0.85 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF267-201 - 743 4.8e-99 320.8 138.5 2 19 8.6 1.1e+04 -2.8 0.5 12 18 241 247 241 248 0.85 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF267-201 - 743 4.8e-99 320.8 138.5 3 19 0.39 5e+02 1.4 1.0 9 20 258 272 255 277 0.78 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF267-201 - 743 4.8e-99 320.8 138.5 4 19 3.3e-05 0.043 14.3 0.5 8 23 315 330 313 333 0.86 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF267-201 - 743 4.8e-99 320.8 138.5 5 19 0.67 8.6e+02 0.7 0.2 2 25 337 360 336 360 0.67 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF267-201 - 743 4.8e-99 320.8 138.5 6 19 2.7e-05 0.034 14.6 0.7 10 26 375 391 375 391 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF267-201 - 743 4.8e-99 320.8 138.5 7 19 5.8e-11 7.4e-08 32.5 1.7 1 25 394 418 394 419 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF267-201 - 743 4.8e-99 320.8 138.5 8 19 8.1e-12 1e-08 35.2 3.2 2 25 423 446 422 447 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF267-201 - 743 4.8e-99 320.8 138.5 9 19 1.1e-08 1.5e-05 25.2 1.5 2 25 451 474 451 475 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF267-201 - 743 4.8e-99 320.8 138.5 10 19 9.2e-12 1.2e-08 35.0 0.6 1 25 478 502 478 503 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF267-201 - 743 4.8e-99 320.8 138.5 11 19 1.2e-07 0.00015 22.0 2.8 2 25 507 530 507 531 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF267-201 - 743 4.8e-99 320.8 138.5 12 19 6.9e-11 8.8e-08 32.2 0.7 1 24 534 557 534 559 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF267-201 - 743 4.8e-99 320.8 138.5 13 19 1.5e-10 1.9e-07 31.2 3.6 1 25 562 586 562 587 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF267-201 - 743 4.8e-99 320.8 138.5 14 19 1.1e-11 1.4e-08 34.8 1.1 2 25 591 614 590 615 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF267-201 - 743 4.8e-99 320.8 138.5 15 19 2.1e-10 2.7e-07 30.7 0.3 4 25 621 642 618 643 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF267-201 - 743 4.8e-99 320.8 138.5 16 19 1.8e-11 2.3e-08 34.1 0.9 2 26 647 671 646 671 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF267-201 - 743 4.8e-99 320.8 138.5 17 19 5.5e-11 7.1e-08 32.5 1.7 2 25 675 698 674 699 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF267-201 - 743 4.8e-99 320.8 138.5 18 19 2.3e-10 2.9e-07 30.6 1.1 2 26 703 727 702 727 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF267-201 - 743 4.8e-99 320.8 138.5 19 19 0.12 1.5e+02 3.1 0.1 2 13 731 742 730 743 0.86 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZNF267-201 - 743 1.9e-72 235.9 145.7 1 17 1.9 2.5e+03 -0.7 0.1 8 17 167 176 166 177 0.88 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF267-201 - 743 1.9e-72 235.9 145.7 2 17 0.068 87 3.9 1.9 1 21 267 291 267 292 0.75 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF267-201 - 743 1.9e-72 235.9 145.7 3 17 0.0019 2.4 8.8 0.6 1 20 322 341 322 343 0.95 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF267-201 - 743 1.9e-72 235.9 145.7 4 17 0.15 1.9e+02 2.8 0.8 3 11 350 360 349 366 0.81 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF267-201 - 743 1.9e-72 235.9 145.7 5 17 1.6e-09 2.1e-06 27.9 1.3 1 23 380 402 380 402 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF267-201 - 743 1.9e-72 235.9 145.7 6 17 3.4e-06 0.0044 17.4 4.7 1 23 408 430 408 430 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF267-201 - 743 1.9e-72 235.9 145.7 7 17 4.5e-08 5.8e-05 23.3 3.9 1 23 436 458 436 458 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF267-201 - 743 1.9e-72 235.9 145.7 8 17 1e-08 1.3e-05 25.4 1.3 1 23 464 486 464 486 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF267-201 - 743 1.9e-72 235.9 145.7 9 17 2.7e-08 3.4e-05 24.0 4.1 1 23 492 514 492 514 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF267-201 - 743 1.9e-72 235.9 145.7 10 17 5.7e-05 0.073 13.6 1.7 1 23 520 542 520 542 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF267-201 - 743 1.9e-72 235.9 145.7 11 17 9.2e-09 1.2e-05 25.5 4.0 1 23 548 570 548 570 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF267-201 - 743 1.9e-72 235.9 145.7 12 17 1.5e-08 2e-05 24.8 1.7 1 23 576 598 576 598 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF267-201 - 743 1.9e-72 235.9 145.7 13 17 6.6e-08 8.5e-05 22.8 0.5 1 23 604 626 604 626 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF267-201 - 743 1.9e-72 235.9 145.7 14 17 9.4e-09 1.2e-05 25.5 1.8 1 23 632 654 632 654 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF267-201 - 743 1.9e-72 235.9 145.7 15 17 6.4e-09 8.3e-06 26.0 2.1 1 23 660 682 660 682 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF267-201 - 743 1.9e-72 235.9 145.7 16 17 1.9e-08 2.5e-05 24.5 2.4 1 23 688 710 688 710 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF267-201 - 743 1.9e-72 235.9 145.7 17 17 3.3e-09 4.2e-06 26.9 0.5 1 23 716 738 716 738 0.99 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZNF267-201 - 743 1.5e-38 128.1 134.6 1 16 1.6 2.1e+03 0.1 2.9 1 20 267 286 267 289 0.65 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF267-201 - 743 1.5e-38 128.1 134.6 2 16 0.039 50 5.1 0.5 1 20 322 341 322 343 0.88 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF267-201 - 743 1.5e-38 128.1 134.6 3 16 0.88 1.1e+03 0.9 0.7 3 15 350 364 348 368 0.73 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF267-201 - 743 1.5e-38 128.1 134.6 4 16 1.7e-05 0.021 15.6 1.1 1 23 380 402 380 403 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF267-201 - 743 1.5e-38 128.1 134.6 5 16 3.9e-05 0.05 14.5 3.9 1 23 408 430 408 431 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF267-201 - 743 1.5e-38 128.1 134.6 6 16 6e-05 0.077 13.9 3.1 1 23 436 458 436 459 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF267-201 - 743 1.5e-38 128.1 134.6 7 16 5.1e-05 0.066 14.1 1.1 1 23 464 486 464 487 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF267-201 - 743 1.5e-38 128.1 134.6 8 16 9.8e-06 0.013 16.3 3.6 1 23 492 514 492 515 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF267-201 - 743 1.5e-38 128.1 134.6 9 16 4.4e-05 0.056 14.3 1.8 1 23 520 542 520 543 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF267-201 - 743 1.5e-38 128.1 134.6 10 16 3.2e-05 0.041 14.7 3.0 1 23 548 570 548 571 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF267-201 - 743 1.5e-38 128.1 134.6 11 16 1.6e-06 0.002 18.8 1.3 1 23 576 598 576 599 0.97 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF267-201 - 743 1.5e-38 128.1 134.6 12 16 4.3e-05 0.055 14.3 0.4 1 23 604 626 604 627 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF267-201 - 743 1.5e-38 128.1 134.6 13 16 1.9e-05 0.024 15.4 1.2 1 23 632 654 632 655 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF267-201 - 743 1.5e-38 128.1 134.6 14 16 2.9e-06 0.0037 18.0 1.3 1 23 660 682 660 683 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF267-201 - 743 1.5e-38 128.1 134.6 15 16 8.6e-06 0.011 16.5 1.5 1 23 688 710 688 711 0.91 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF267-201 - 743 1.5e-38 128.1 134.6 16 16 2.6e-06 0.0033 18.1 0.5 1 23 716 738 716 739 0.96 C2H2-type zinc finger KRAB PF01352.27 42 ZNF267-201 - 743 4e-25 87.2 0.5 1 1 6.7e-28 8.5e-25 86.1 0.5 2 42 4 44 3 44 0.98 KRAB box zf-C2H2_6 PF13912.6 27 ZNF267-201 - 743 6.8e-21 73.8 132.6 1 16 3.3 4.3e+03 -2.1 1.0 2 7 267 272 266 275 0.85 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF267-201 - 743 6.8e-21 73.8 132.6 2 16 2.5 3.2e+03 -1.7 0.3 2 10 322 330 322 332 0.83 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF267-201 - 743 6.8e-21 73.8 132.6 3 16 0.23 3e+02 1.6 0.2 5 12 353 360 353 360 0.89 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF267-201 - 743 6.8e-21 73.8 132.6 4 16 0.00026 0.33 11.0 0.6 2 22 380 400 379 404 0.85 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF267-201 - 743 6.8e-21 73.8 132.6 5 16 0.0023 3 7.9 4.1 2 24 408 430 408 433 0.85 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF267-201 - 743 6.8e-21 73.8 132.6 6 16 0.0016 2 8.5 3.5 2 24 436 458 436 461 0.80 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF267-201 - 743 6.8e-21 73.8 132.6 7 16 5.8e-06 0.0075 16.3 0.6 2 24 464 486 463 489 0.92 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF267-201 - 743 6.8e-21 73.8 132.6 8 16 0.00017 0.21 11.6 3.6 2 24 492 514 492 517 0.88 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF267-201 - 743 6.8e-21 73.8 132.6 9 16 0.011 14 5.8 0.8 2 20 520 538 519 544 0.82 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF267-201 - 743 6.8e-21 73.8 132.6 10 16 0.0022 2.8 8.0 5.0 2 14 548 560 548 570 0.78 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF267-201 - 743 6.8e-21 73.8 132.6 11 16 0.00011 0.14 12.2 1.5 2 24 576 598 576 601 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF267-201 - 743 6.8e-21 73.8 132.6 12 16 0.0006 0.76 9.8 0.4 2 14 604 616 604 628 0.77 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF267-201 - 743 6.8e-21 73.8 132.6 13 16 0.00013 0.17 11.9 2.2 2 24 632 654 632 657 0.95 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF267-201 - 743 6.8e-21 73.8 132.6 14 16 6.6e-06 0.0084 16.1 1.5 2 24 660 682 660 685 0.95 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF267-201 - 743 6.8e-21 73.8 132.6 15 16 6.8e-07 0.00087 19.2 2.2 2 25 688 711 688 713 0.95 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF267-201 - 743 6.8e-21 73.8 132.6 16 16 2.7e-05 0.035 14.1 1.1 2 25 716 739 716 741 0.94 C2H2-type zinc finger zf-C2H2_jaz PF12171.8 27 ZNF267-201 - 743 2.3e-16 59.6 75.1 1 13 0.00025 0.32 11.3 0.3 2 22 380 400 379 400 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF267-201 - 743 2.3e-16 59.6 75.1 2 13 0.083 1.1e+02 3.3 1.4 2 21 408 427 407 428 0.83 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF267-201 - 743 2.3e-16 59.6 75.1 3 13 0.0034 4.3 7.7 2.0 2 24 436 458 435 458 0.91 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF267-201 - 743 2.3e-16 59.6 75.1 4 13 0.00097 1.2 9.5 0.3 2 22 464 484 463 484 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF267-201 - 743 2.3e-16 59.6 75.1 5 13 0.0023 3 8.3 0.6 2 22 492 512 491 512 0.90 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF267-201 - 743 2.3e-16 59.6 75.1 6 13 0.11 1.4e+02 2.9 0.8 2 11 520 529 519 530 0.89 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF267-201 - 743 2.3e-16 59.6 75.1 7 13 0.17 2.2e+02 2.3 0.3 2 11 548 557 547 566 0.84 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF267-201 - 743 2.3e-16 59.6 75.1 8 13 2e-05 0.026 14.8 0.2 2 24 576 598 575 598 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF267-201 - 743 2.3e-16 59.6 75.1 9 13 0.041 53 4.3 0.1 2 20 604 622 603 624 0.82 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF267-201 - 743 2.3e-16 59.6 75.1 10 13 0.0017 2.1 8.7 0.7 2 24 632 654 631 654 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF267-201 - 743 2.3e-16 59.6 75.1 11 13 0.00018 0.23 11.8 0.1 2 21 660 679 659 680 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF267-201 - 743 2.3e-16 59.6 75.1 12 13 0.0055 7 7.1 0.4 2 24 688 710 687 711 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF267-201 - 743 2.3e-16 59.6 75.1 13 13 1.4e-05 0.018 15.4 0.4 2 24 716 738 715 738 0.95 Zinc-finger double-stranded RNA-binding XPA_N PF01286.18 32 ZNF267-201 - 743 2.1e-11 43.7 75.0 1 15 0.033 42 4.3 0.1 3 15 323 335 321 340 0.84 XPA protein N-terminal XPA_N PF01286.18 32 ZNF267-201 - 743 2.1e-11 43.7 75.0 2 15 7.5 9.6e+03 -3.2 0.1 6 11 354 359 353 360 0.82 XPA protein N-terminal XPA_N PF01286.18 32 ZNF267-201 - 743 2.1e-11 43.7 75.0 3 15 0.11 1.4e+02 2.6 0.5 3 14 381 392 380 393 0.91 XPA protein N-terminal XPA_N PF01286.18 32 ZNF267-201 - 743 2.1e-11 43.7 75.0 4 15 0.00051 0.65 10.1 0.9 3 18 409 424 407 427 0.77 XPA protein N-terminal XPA_N PF01286.18 32 ZNF267-201 - 743 2.1e-11 43.7 75.0 5 15 0.0028 3.5 7.7 0.7 3 14 437 448 435 454 0.87 XPA protein N-terminal XPA_N PF01286.18 32 ZNF267-201 - 743 2.1e-11 43.7 75.0 6 15 1 1.3e+03 -0.5 0.1 20 25 464 469 462 476 0.68 XPA protein N-terminal XPA_N PF01286.18 32 ZNF267-201 - 743 2.1e-11 43.7 75.0 7 15 0.011 14 5.8 0.8 3 14 493 504 491 510 0.87 XPA protein N-terminal XPA_N PF01286.18 32 ZNF267-201 - 743 2.1e-11 43.7 75.0 8 15 0.82 1.1e+03 -0.2 1.2 3 11 521 529 520 531 0.80 XPA protein N-terminal XPA_N PF01286.18 32 ZNF267-201 - 743 2.1e-11 43.7 75.0 9 15 0.0027 3.4 7.8 0.0 3 14 549 560 547 566 0.87 XPA protein N-terminal XPA_N PF01286.18 32 ZNF267-201 - 743 2.1e-11 43.7 75.0 10 15 0.013 16 5.6 0.7 3 14 577 588 575 590 0.93 XPA protein N-terminal XPA_N PF01286.18 32 ZNF267-201 - 743 2.1e-11 43.7 75.0 11 15 0.0042 5.4 7.2 0.2 3 14 605 616 603 617 0.87 XPA protein N-terminal XPA_N PF01286.18 32 ZNF267-201 - 743 2.1e-11 43.7 75.0 12 15 0.00086 1.1 9.4 0.1 3 18 633 649 631 650 0.79 XPA protein N-terminal XPA_N PF01286.18 32 ZNF267-201 - 743 2.1e-11 43.7 75.0 13 15 0.00049 0.62 10.2 0.1 3 18 661 677 659 678 0.79 XPA protein N-terminal XPA_N PF01286.18 32 ZNF267-201 - 743 2.1e-11 43.7 75.0 14 15 0.00058 0.74 9.9 0.1 3 18 689 705 687 706 0.80 XPA protein N-terminal XPA_N PF01286.18 32 ZNF267-201 - 743 2.1e-11 43.7 75.0 15 15 0.00078 1 9.5 0.1 3 17 717 732 715 734 0.78 XPA protein N-terminal Zn-ribbon_8 PF09723.10 40 ZNF267-201 - 743 1.4e-08 34.7 99.0 1 14 7.1 9e+03 -3.1 0.0 6 14 216 224 215 232 0.69 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF267-201 - 743 1.4e-08 34.7 99.0 2 14 1.5 1.9e+03 -0.9 5.0 6 32 244 272 243 280 0.64 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF267-201 - 743 1.4e-08 34.7 99.0 3 14 0.13 1.7e+02 2.4 2.7 6 17 322 336 321 358 0.64 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF267-201 - 743 1.4e-08 34.7 99.0 4 14 2.7 3.5e+03 -1.8 0.1 9 16 353 360 350 368 0.82 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF267-201 - 743 1.4e-08 34.7 99.0 5 14 8.3e-06 0.011 15.9 3.1 6 36 380 417 379 419 0.92 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF267-201 - 743 1.4e-08 34.7 99.0 6 14 0.00088 1.1 9.4 4.4 6 36 436 473 435 476 0.82 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF267-201 - 743 1.4e-08 34.7 99.0 7 14 0.00053 0.68 10.1 4.4 6 34 492 527 491 530 0.83 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF267-201 - 743 1.4e-08 34.7 99.0 8 14 0.00081 1 9.5 4.2 6 34 520 555 519 558 0.89 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF267-201 - 743 1.4e-08 34.7 99.0 9 14 0.011 14 5.9 0.5 6 15 548 557 547 567 0.91 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF267-201 - 743 1.4e-08 34.7 99.0 10 14 6.1e-05 0.079 13.1 2.0 6 34 576 611 575 616 0.87 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF267-201 - 743 1.4e-08 34.7 99.0 11 14 0.00013 0.17 12.0 6.4 6 34 632 667 631 672 0.90 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF267-201 - 743 1.4e-08 34.7 99.0 12 14 0.00087 1.1 9.4 5.9 6 34 660 695 659 698 0.79 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF267-201 - 743 1.4e-08 34.7 99.0 13 14 0.00047 0.61 10.3 6.0 6 34 688 723 687 728 0.80 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF267-201 - 743 1.4e-08 34.7 99.0 14 14 0.0028 3.5 7.8 0.6 6 17 716 727 715 740 0.83 Zinc ribbon domain # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF267-201.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF267-201.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF267-201.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF267-201.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF267-201.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:02:53 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- KRAB PF01352.27 42 ZNF267-202 - 77 1.3e-26 92.0 0.5 1 1 1e-30 1.8e-26 91.5 0.5 1 42 3 44 3 44 0.98 KRAB box # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF267-202.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF267-202.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF267-202.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF267-202.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF267-202.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:02:53 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF267-203.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF267-203.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF267-203.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF267-203.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF267-203.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:02:54 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF267-204.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF267-204.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF267-204.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF267-204.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF267-204.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:02:54 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF267-205.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF267-205.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF267-205.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF267-205.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF267-205.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:02:54 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZNF267-206 - 487 1.2e-104 338.5 129.3 1 17 0.53 5.6e+02 1.3 1.2 9 20 2 16 1 21 0.76 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF267-206 - 487 1.2e-104 338.5 129.3 2 17 2.5e-05 0.026 14.9 0.5 8 23 59 74 57 77 0.86 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF267-206 - 487 1.2e-104 338.5 129.3 3 17 0.5 5.2e+02 1.3 0.2 2 25 81 104 80 104 0.68 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF267-206 - 487 1.2e-104 338.5 129.3 4 17 2e-05 0.021 15.2 0.7 10 26 119 135 119 135 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF267-206 - 487 1.2e-104 338.5 129.3 5 17 4.2e-11 4.5e-08 33.2 1.7 1 25 138 162 138 163 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF267-206 - 487 1.2e-104 338.5 129.3 6 17 5.9e-12 6.3e-09 35.9 3.2 2 25 167 190 166 191 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF267-206 - 487 1.2e-104 338.5 129.3 7 17 8.4e-09 8.9e-06 25.9 1.5 2 25 195 218 195 219 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF267-206 - 487 1.2e-104 338.5 129.3 8 17 6.7e-12 7.1e-09 35.7 0.6 1 25 222 246 222 247 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF267-206 - 487 1.2e-104 338.5 129.3 9 17 8.7e-08 9.1e-05 22.7 2.8 2 25 251 274 251 275 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF267-206 - 487 1.2e-104 338.5 129.3 10 17 5.1e-11 5.4e-08 32.9 0.7 1 24 278 301 278 303 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF267-206 - 487 1.2e-104 338.5 129.3 11 17 1.1e-10 1.2e-07 31.8 3.6 1 25 306 330 306 331 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF267-206 - 487 1.2e-104 338.5 129.3 12 17 7.9e-12 8.3e-09 35.5 1.1 2 25 335 358 334 359 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF267-206 - 487 1.2e-104 338.5 129.3 13 17 1.6e-10 1.7e-07 31.4 0.3 4 25 365 386 362 387 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF267-206 - 487 1.2e-104 338.5 129.3 14 17 1.3e-11 1.4e-08 34.8 0.9 2 26 391 415 390 415 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF267-206 - 487 1.2e-104 338.5 129.3 15 17 4.1e-11 4.3e-08 33.2 1.7 2 25 419 442 418 443 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF267-206 - 487 1.2e-104 338.5 129.3 16 17 1.7e-10 1.8e-07 31.3 1.1 2 26 447 471 446 471 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF267-206 - 487 1.2e-104 338.5 129.3 17 17 0.087 92 3.7 0.1 2 13 475 486 474 487 0.86 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZNF267-206 - 487 3.1e-75 244.7 145.4 1 16 0.05 53 4.5 1.9 1 21 11 35 11 36 0.75 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF267-206 - 487 3.1e-75 244.7 145.4 2 16 0.0014 1.5 9.5 0.6 1 20 66 85 66 87 0.95 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF267-206 - 487 3.1e-75 244.7 145.4 3 16 0.11 1.2e+02 3.5 0.8 3 11 94 104 93 110 0.81 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF267-206 - 487 3.1e-75 244.7 145.4 4 16 1.2e-09 1.3e-06 28.6 1.3 1 23 124 146 124 146 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF267-206 - 487 3.1e-75 244.7 145.4 5 16 2.5e-06 0.0027 18.1 4.7 1 23 152 174 152 174 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF267-206 - 487 3.1e-75 244.7 145.4 6 16 3.3e-08 3.5e-05 24.0 3.9 1 23 180 202 180 202 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF267-206 - 487 3.1e-75 244.7 145.4 7 16 7.5e-09 7.9e-06 26.0 1.3 1 23 208 230 208 230 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF267-206 - 487 3.1e-75 244.7 145.4 8 16 2e-08 2.1e-05 24.7 4.1 1 23 236 258 236 258 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF267-206 - 487 3.1e-75 244.7 145.4 9 16 4.2e-05 0.044 14.2 1.7 1 23 264 286 264 286 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF267-206 - 487 3.1e-75 244.7 145.4 10 16 6.8e-09 7.2e-06 26.2 4.0 1 23 292 314 292 314 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF267-206 - 487 3.1e-75 244.7 145.4 11 16 1.1e-08 1.2e-05 25.5 1.7 1 23 320 342 320 342 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF267-206 - 487 3.1e-75 244.7 145.4 12 16 4.9e-08 5.1e-05 23.5 0.5 1 23 348 370 348 370 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF267-206 - 487 3.1e-75 244.7 145.4 13 16 6.9e-09 7.3e-06 26.2 1.8 1 23 376 398 376 398 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF267-206 - 487 3.1e-75 244.7 145.4 14 16 4.8e-09 5e-06 26.7 2.1 1 23 404 426 404 426 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF267-206 - 487 3.1e-75 244.7 145.4 15 16 1.4e-08 1.5e-05 25.2 2.4 1 23 432 454 432 454 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF267-206 - 487 3.1e-75 244.7 145.4 16 16 2.4e-09 2.5e-06 27.6 0.5 1 23 460 482 460 482 0.99 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZNF267-206 - 487 9.3e-42 138.1 133.9 1 16 0.7 7.4e+02 1.5 2.3 1 20 11 30 11 34 0.67 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF267-206 - 487 9.3e-42 138.1 133.9 2 16 0.029 31 5.8 0.5 1 20 66 85 66 87 0.88 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF267-206 - 487 9.3e-42 138.1 133.9 3 16 0.66 6.9e+02 1.6 0.7 3 15 94 108 92 112 0.73 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF267-206 - 487 9.3e-42 138.1 133.9 4 16 1.2e-05 0.013 16.3 1.1 1 23 124 146 124 147 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF267-206 - 487 9.3e-42 138.1 133.9 5 16 2.8e-05 0.03 15.1 3.9 1 23 152 174 152 175 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF267-206 - 487 9.3e-42 138.1 133.9 6 16 4.4e-05 0.046 14.6 3.1 1 23 180 202 180 203 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF267-206 - 487 9.3e-42 138.1 133.9 7 16 3.8e-05 0.04 14.8 1.1 1 23 208 230 208 231 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF267-206 - 487 9.3e-42 138.1 133.9 8 16 7.2e-06 0.0076 17.0 3.6 1 23 236 258 236 259 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF267-206 - 487 9.3e-42 138.1 133.9 9 16 3.2e-05 0.034 15.0 1.8 1 23 264 286 264 287 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF267-206 - 487 9.3e-42 138.1 133.9 10 16 2.3e-05 0.025 15.4 3.0 1 23 292 314 292 315 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF267-206 - 487 9.3e-42 138.1 133.9 11 16 1.1e-06 0.0012 19.5 1.3 1 23 320 342 320 343 0.97 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF267-206 - 487 9.3e-42 138.1 133.9 12 16 3.1e-05 0.033 15.0 0.4 1 23 348 370 348 371 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF267-206 - 487 9.3e-42 138.1 133.9 13 16 1.4e-05 0.015 16.1 1.2 1 23 376 398 376 399 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF267-206 - 487 9.3e-42 138.1 133.9 14 16 2.1e-06 0.0022 18.7 1.3 1 23 404 426 404 427 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF267-206 - 487 9.3e-42 138.1 133.9 15 16 6.3e-06 0.0067 17.2 1.5 1 23 432 454 432 455 0.91 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF267-206 - 487 9.3e-42 138.1 133.9 16 16 1.9e-06 0.002 18.8 0.5 1 23 460 482 460 483 0.96 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF267-206 - 487 8.7e-24 83.0 133.3 1 16 2.6 2.7e+03 -1.5 1.0 2 7 11 16 10 19 0.85 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF267-206 - 487 8.7e-24 83.0 133.3 2 16 1.9 2e+03 -1.1 0.3 2 10 66 74 66 76 0.83 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF267-206 - 487 8.7e-24 83.0 133.3 3 16 0.18 1.9e+02 2.2 0.2 5 12 97 104 97 104 0.89 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF267-206 - 487 8.7e-24 83.0 133.3 4 16 0.00019 0.21 11.7 0.6 2 22 124 144 123 148 0.85 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF267-206 - 487 8.7e-24 83.0 133.3 5 16 0.0018 1.8 8.6 4.2 2 24 152 174 152 177 0.85 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF267-206 - 487 8.7e-24 83.0 133.3 6 16 0.0012 1.3 9.2 3.5 2 24 180 202 180 205 0.81 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF267-206 - 487 8.7e-24 83.0 133.3 7 16 4.3e-06 0.0046 16.9 0.6 2 24 208 230 207 233 0.92 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF267-206 - 487 8.7e-24 83.0 133.3 8 16 0.00012 0.13 12.3 3.6 2 24 236 258 236 261 0.88 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF267-206 - 487 8.7e-24 83.0 133.3 9 16 0.0082 8.6 6.5 0.8 2 20 264 282 263 288 0.82 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF267-206 - 487 8.7e-24 83.0 133.3 10 16 0.0025 2.6 8.1 5.5 2 14 292 304 292 314 0.78 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF267-206 - 487 8.7e-24 83.0 133.3 11 16 8.1e-05 0.086 12.9 1.5 2 24 320 342 320 345 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF267-206 - 487 8.7e-24 83.0 133.3 12 16 0.00045 0.47 10.5 0.4 2 14 348 360 348 372 0.77 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF267-206 - 487 8.7e-24 83.0 133.3 13 16 9.8e-05 0.1 12.6 2.2 2 24 376 398 376 401 0.95 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF267-206 - 487 8.7e-24 83.0 133.3 14 16 4.9e-06 0.0051 16.8 1.5 2 24 404 426 404 429 0.95 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF267-206 - 487 8.7e-24 83.0 133.3 15 16 5.1e-07 0.00053 19.9 2.2 2 25 432 455 432 457 0.95 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF267-206 - 487 8.7e-24 83.0 133.3 16 16 2e-05 0.021 14.8 1.1 2 25 460 483 460 485 0.94 C2H2-type zinc finger zf-C2H2_jaz PF12171.8 27 ZNF267-206 - 487 6e-19 67.8 75.1 1 13 0.00019 0.2 12.0 0.3 2 22 124 144 123 144 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF267-206 - 487 6e-19 67.8 75.1 2 13 0.062 65 4.0 1.4 2 21 152 171 151 172 0.84 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF267-206 - 487 6e-19 67.8 75.1 3 13 0.0025 2.6 8.4 2.0 2 24 180 202 179 202 0.91 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF267-206 - 487 6e-19 67.8 75.1 4 13 0.00072 0.76 10.1 0.3 2 22 208 228 207 228 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF267-206 - 487 6e-19 67.8 75.1 5 13 0.0017 1.8 8.9 0.6 2 22 236 256 235 256 0.90 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF267-206 - 487 6e-19 67.8 75.1 6 13 0.086 90 3.5 0.8 2 11 264 273 263 274 0.89 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF267-206 - 487 6e-19 67.8 75.1 7 13 0.13 1.3e+02 3.0 0.3 2 11 292 301 291 310 0.84 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF267-206 - 487 6e-19 67.8 75.1 8 13 1.5e-05 0.016 15.5 0.2 2 24 320 342 319 342 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF267-206 - 487 6e-19 67.8 75.1 9 13 0.031 32 4.9 0.1 2 20 348 366 347 368 0.82 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF267-206 - 487 6e-19 67.8 75.1 10 13 0.0012 1.3 9.4 0.7 2 24 376 398 375 398 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF267-206 - 487 6e-19 67.8 75.1 11 13 0.00014 0.14 12.4 0.1 2 21 404 423 403 424 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF267-206 - 487 6e-19 67.8 75.1 12 13 0.0041 4.3 7.7 0.4 2 24 432 454 431 455 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF267-206 - 487 6e-19 67.8 75.1 13 13 1e-05 0.011 16.0 0.4 2 24 460 482 459 482 0.95 Zinc-finger double-stranded RNA-binding Zn-ribbon_8 PF09723.10 40 ZNF267-206 - 487 4e-12 46.0 91.3 1 13 0.29 3e+02 1.6 0.4 6 14 11 19 10 32 0.80 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF267-206 - 487 4e-12 46.0 91.3 2 13 0.083 88 3.3 2.7 6 17 66 81 65 106 0.65 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF267-206 - 487 4e-12 46.0 91.3 3 13 1.8 1.9e+03 -0.9 0.1 9 17 97 105 93 115 0.82 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF267-206 - 487 4e-12 46.0 91.3 4 13 5.4e-06 0.0057 16.8 3.0 6 36 124 161 123 164 0.92 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF267-206 - 487 4e-12 46.0 91.3 5 13 0.00064 0.67 10.1 4.4 6 36 180 217 179 220 0.82 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF267-206 - 487 4e-12 46.0 91.3 6 13 0.00045 0.47 10.6 4.6 6 34 236 271 235 274 0.83 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF267-206 - 487 4e-12 46.0 91.3 7 13 0.00054 0.57 10.4 4.1 6 34 264 299 263 304 0.89 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF267-206 - 487 4e-12 46.0 91.3 8 13 0.0073 7.7 6.7 0.4 6 15 292 301 291 313 0.90 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF267-206 - 487 4e-12 46.0 91.3 9 13 5.1e-05 0.054 13.6 2.3 6 34 320 355 318 360 0.87 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF267-206 - 487 4e-12 46.0 91.3 10 13 0.00011 0.12 12.5 6.7 6 34 376 411 375 418 0.90 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF267-206 - 487 4e-12 46.0 91.3 11 13 0.001 1.1 9.4 6.4 6 34 404 439 403 441 0.80 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF267-206 - 487 4e-12 46.0 91.3 12 13 0.00044 0.47 10.6 6.3 6 34 432 467 431 472 0.80 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF267-206 - 487 4e-12 46.0 91.3 13 13 0.002 2.2 8.5 0.7 6 17 460 471 459 485 0.82 Zinc ribbon domain XPA_N PF01286.18 32 ZNF267-206 - 487 5.1e-12 45.6 81.7 1 15 0.025 26 5.0 0.1 3 15 67 79 65 84 0.84 XPA protein N-terminal XPA_N PF01286.18 32 ZNF267-206 - 487 5.1e-12 45.6 81.7 2 15 5 5.3e+03 -2.4 0.0 6 11 98 103 97 105 0.82 XPA protein N-terminal XPA_N PF01286.18 32 ZNF267-206 - 487 5.1e-12 45.6 81.7 3 15 0.083 88 3.3 0.5 3 14 125 136 124 137 0.91 XPA protein N-terminal XPA_N PF01286.18 32 ZNF267-206 - 487 5.1e-12 45.6 81.7 4 15 0.00038 0.41 10.7 0.9 3 18 153 168 151 171 0.77 XPA protein N-terminal XPA_N PF01286.18 32 ZNF267-206 - 487 5.1e-12 45.6 81.7 5 15 0.0021 2.2 8.4 0.7 3 14 181 192 179 198 0.87 XPA protein N-terminal XPA_N PF01286.18 32 ZNF267-206 - 487 5.1e-12 45.6 81.7 6 15 0.8 8.5e+02 0.1 0.1 20 25 208 213 206 220 0.68 XPA protein N-terminal XPA_N PF01286.18 32 ZNF267-206 - 487 5.1e-12 45.6 81.7 7 15 0.0085 9 6.4 0.8 3 14 237 248 235 254 0.87 XPA protein N-terminal XPA_N PF01286.18 32 ZNF267-206 - 487 5.1e-12 45.6 81.7 8 15 0.49 5.2e+02 0.8 0.9 3 11 265 273 263 275 0.80 XPA protein N-terminal XPA_N PF01286.18 32 ZNF267-206 - 487 5.1e-12 45.6 81.7 9 15 0.002 2.1 8.4 0.0 3 14 293 304 291 310 0.87 XPA protein N-terminal XPA_N PF01286.18 32 ZNF267-206 - 487 5.1e-12 45.6 81.7 10 15 0.0096 10 6.3 0.8 3 14 321 332 319 334 0.93 XPA protein N-terminal XPA_N PF01286.18 32 ZNF267-206 - 487 5.1e-12 45.6 81.7 11 15 0.0032 3.4 7.8 0.2 3 14 349 360 347 361 0.87 XPA protein N-terminal XPA_N PF01286.18 32 ZNF267-206 - 487 5.1e-12 45.6 81.7 12 15 0.00065 0.68 10.0 0.1 3 18 377 393 375 394 0.79 XPA protein N-terminal XPA_N PF01286.18 32 ZNF267-206 - 487 5.1e-12 45.6 81.7 13 15 0.00037 0.39 10.8 0.1 3 18 405 421 403 422 0.79 XPA protein N-terminal XPA_N PF01286.18 32 ZNF267-206 - 487 5.1e-12 45.6 81.7 14 15 0.00043 0.46 10.6 0.1 3 18 433 449 431 450 0.80 XPA protein N-terminal XPA_N PF01286.18 32 ZNF267-206 - 487 5.1e-12 45.6 81.7 15 15 0.00059 0.62 10.2 0.1 3 17 461 476 459 478 0.79 XPA protein N-terminal zf-met PF12874.7 25 ZNF267-206 - 487 1.7e-08 34.5 96.7 1 13 8.8e-05 0.092 13.2 1.2 1 21 124 144 124 147 0.91 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF267-206 - 487 1.7e-08 34.5 96.7 2 13 0.49 5.2e+02 1.3 2.7 1 21 152 172 152 175 0.89 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF267-206 - 487 1.7e-08 34.5 96.7 3 13 0.19 2e+02 2.6 2.9 1 20 180 199 180 203 0.90 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF267-206 - 487 1.7e-08 34.5 96.7 4 13 0.00013 0.14 12.6 1.4 1 21 208 228 208 231 0.93 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF267-206 - 487 1.7e-08 34.5 96.7 5 13 0.075 80 3.8 2.3 1 19 236 254 236 259 0.90 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF267-206 - 487 1.7e-08 34.5 96.7 6 13 0.097 1e+02 3.5 1.2 1 21 264 284 264 287 0.80 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF267-206 - 487 1.7e-08 34.5 96.7 7 13 0.14 1.5e+02 3.0 0.4 1 19 292 310 292 313 0.94 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF267-206 - 487 1.7e-08 34.5 96.7 8 13 0.0029 3.1 8.3 0.3 1 16 320 335 320 342 0.83 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF267-206 - 487 1.7e-08 34.5 96.7 9 13 0.025 26 5.4 0.4 1 20 348 367 348 371 0.91 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF267-206 - 487 1.7e-08 34.5 96.7 10 13 0.0013 1.3 9.5 1.4 1 23 376 398 376 399 0.95 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF267-206 - 487 1.7e-08 34.5 96.7 11 13 0.00059 0.62 10.5 0.2 1 19 404 422 404 424 0.93 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF267-206 - 487 1.7e-08 34.5 96.7 12 13 0.04 42 4.7 1.0 1 23 432 454 432 455 0.93 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF267-206 - 487 1.7e-08 34.5 96.7 13 13 3.9e-06 0.0041 17.5 0.9 1 23 460 482 460 483 0.95 Zinc-finger of C2H2 type # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF267-206.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF267-206.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF267-206.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF267-206.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF267-206.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:02:55 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZNF273-201 - 504 3e-93 302.4 109.8 1 15 2.3 1.4e+03 -0.0 0.1 10 19 108 117 106 120 0.82 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF273-201 - 504 3e-93 302.4 109.8 2 15 4.8e-06 0.0029 17.9 3.5 5 23 131 149 127 150 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF273-201 - 504 3e-93 302.4 109.8 3 15 4.5e-05 0.028 14.9 0.8 2 25 156 179 155 180 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF273-201 - 504 3e-93 302.4 109.8 4 15 6.1e-09 3.8e-06 27.1 0.4 1 25 183 207 183 208 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF273-201 - 504 3e-93 302.4 109.8 5 15 2.4e-09 1.5e-06 28.3 2.4 2 25 212 235 211 235 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF273-201 - 504 3e-93 302.4 109.8 6 15 3.9e-09 2.4e-06 27.7 0.4 2 25 240 263 239 263 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF273-201 - 504 3e-93 302.4 109.8 7 15 1.6e-10 9.6e-08 32.1 0.9 2 25 268 291 267 291 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF273-201 - 504 3e-93 302.4 109.8 8 15 5.9e-12 3.6e-09 36.6 1.5 2 25 296 319 295 320 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF273-201 - 504 3e-93 302.4 109.8 9 15 3.8e-12 2.3e-09 37.2 1.7 2 26 324 348 323 348 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF273-201 - 504 3e-93 302.4 109.8 10 15 1.4e-07 8.7e-05 22.8 1.9 2 25 352 375 351 375 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF273-201 - 504 3e-93 302.4 109.8 11 15 1.2e-08 7.4e-06 26.2 0.3 2 24 380 402 379 404 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF273-201 - 504 3e-93 302.4 109.8 12 15 4.9e-11 3e-08 33.7 1.2 2 25 408 431 407 431 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF273-201 - 504 3e-93 302.4 109.8 13 15 7.5e-12 4.6e-09 36.3 1.9 2 25 436 459 435 460 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF273-201 - 504 3e-93 302.4 109.8 14 15 1.6e-07 0.0001 22.6 0.4 1 26 463 488 463 488 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF273-201 - 504 3e-93 302.4 109.8 15 15 0.0038 2.3 8.8 0.6 1 13 491 503 491 504 0.93 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZNF273-201 - 504 9.3e-61 199.0 91.0 1 13 0.00031 0.19 12.2 4.5 1 22 141 162 141 162 0.95 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF273-201 - 504 9.3e-61 199.0 91.0 2 13 5.1e-08 3.1e-05 24.2 1.5 1 23 169 191 169 191 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF273-201 - 504 9.3e-61 199.0 91.0 3 13 3.5e-07 0.00022 21.5 0.8 1 23 197 219 197 219 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF273-201 - 504 9.3e-61 199.0 91.0 4 13 1.2e-06 0.00072 19.9 0.4 1 23 225 247 225 247 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF273-201 - 504 9.3e-61 199.0 91.0 5 13 1.7e-05 0.01 16.2 0.3 1 23 253 275 253 275 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF273-201 - 504 9.3e-61 199.0 91.0 6 13 4.5e-07 0.00028 21.2 0.9 1 23 281 303 281 303 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF273-201 - 504 9.3e-61 199.0 91.0 7 13 2.1e-08 1.3e-05 25.3 0.5 1 23 309 331 309 331 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF273-201 - 504 9.3e-61 199.0 91.0 8 13 4.7e-08 2.9e-05 24.3 0.6 1 21 337 357 337 358 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF273-201 - 504 9.3e-61 199.0 91.0 9 13 6.6e-07 0.00041 20.7 0.5 1 23 365 387 365 387 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF273-201 - 504 9.3e-61 199.0 91.0 10 13 7.7e-06 0.0048 17.3 0.4 1 23 393 415 393 415 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF273-201 - 504 9.3e-61 199.0 91.0 11 13 4.5e-07 0.00028 21.2 0.9 1 23 421 443 421 443 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF273-201 - 504 9.3e-61 199.0 91.0 12 13 1.1e-09 6.8e-07 29.4 1.1 1 23 449 471 449 471 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF273-201 - 504 9.3e-61 199.0 91.0 13 13 0.053 33 5.2 0.4 5 23 481 499 479 499 0.93 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZNF273-201 - 504 1.7e-32 109.2 85.5 1 13 0.0069 4.3 8.5 3.6 1 22 141 162 141 163 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF273-201 - 504 1.7e-32 109.2 85.5 2 13 0.00024 0.15 13.0 0.7 1 23 169 191 169 192 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF273-201 - 504 1.7e-32 109.2 85.5 3 13 3.4e-05 0.021 15.6 0.7 1 23 197 219 197 220 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF273-201 - 504 1.7e-32 109.2 85.5 4 13 0.00015 0.093 13.6 0.4 1 23 225 247 225 248 0.84 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF273-201 - 504 1.7e-32 109.2 85.5 5 13 0.00044 0.27 12.2 0.3 1 23 253 275 253 276 0.91 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF273-201 - 504 1.7e-32 109.2 85.5 6 13 0.00048 0.3 12.0 0.7 1 23 281 303 281 304 0.91 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF273-201 - 504 1.7e-32 109.2 85.5 7 13 1.6e-05 0.0096 16.7 0.5 1 23 309 331 309 332 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF273-201 - 504 1.7e-32 109.2 85.5 8 13 3.5e-05 0.022 15.6 0.5 1 21 337 357 337 359 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF273-201 - 504 1.7e-32 109.2 85.5 9 13 8.6e-05 0.053 14.4 0.5 1 23 365 387 365 388 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF273-201 - 504 1.7e-32 109.2 85.5 10 13 0.0025 1.6 9.8 0.6 1 23 393 415 393 416 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF273-201 - 504 1.7e-32 109.2 85.5 11 13 0.00048 0.3 12.0 0.7 1 23 421 443 421 444 0.91 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF273-201 - 504 1.7e-32 109.2 85.5 12 13 4.1e-06 0.0025 18.5 0.8 1 23 449 471 449 472 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF273-201 - 504 1.7e-32 109.2 85.5 13 13 0.23 1.4e+02 3.7 0.3 6 23 482 499 480 500 0.88 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF273-201 - 504 6.6e-23 80.2 94.2 1 13 0.14 86 3.3 4.2 2 10 141 149 141 162 0.88 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF273-201 - 504 6.6e-23 80.2 94.2 2 13 3.5e-07 0.00021 21.2 0.6 2 25 169 192 168 194 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF273-201 - 504 6.6e-23 80.2 94.2 3 13 0.0011 0.69 10.0 1.5 2 24 197 219 197 222 0.90 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF273-201 - 504 6.6e-23 80.2 94.2 4 13 0.00019 0.12 12.5 0.3 2 24 225 247 225 249 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF273-201 - 504 6.6e-23 80.2 94.2 5 13 0.00043 0.26 11.3 0.4 2 24 253 275 253 278 0.92 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF273-201 - 504 6.6e-23 80.2 94.2 6 13 0.00033 0.21 11.7 0.8 2 24 281 303 281 306 0.89 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF273-201 - 504 6.6e-23 80.2 94.2 7 13 0.0041 2.5 8.2 0.6 2 21 309 328 309 333 0.78 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF273-201 - 504 6.6e-23 80.2 94.2 8 13 6.5e-05 0.04 13.9 1.1 2 22 337 357 337 362 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF273-201 - 504 6.6e-23 80.2 94.2 9 13 0.00031 0.19 11.8 0.9 2 24 365 387 365 388 0.92 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF273-201 - 504 6.6e-23 80.2 94.2 10 13 0.0018 1.1 9.3 0.8 2 24 393 415 393 418 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF273-201 - 504 6.6e-23 80.2 94.2 11 13 0.00033 0.21 11.7 0.8 2 24 421 443 421 446 0.89 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF273-201 - 504 6.6e-23 80.2 94.2 12 13 2.4e-05 0.015 15.3 1.2 2 24 449 471 449 474 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF273-201 - 504 6.6e-23 80.2 94.2 13 13 1.8 1.1e+03 -0.3 0.7 20 26 495 501 494 502 0.87 C2H2-type zinc finger zf-C2H2_11 PF16622.5 29 ZNF273-201 - 504 6e-20 70.7 33.1 1 12 5.4 3.3e+03 -2.1 3.0 5 11 141 147 139 157 0.87 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF273-201 - 504 6e-20 70.7 33.1 2 12 0.13 81 3.1 0.3 5 26 169 190 167 191 0.84 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF273-201 - 504 6e-20 70.7 33.1 3 12 0.0011 0.7 9.7 0.0 5 26 197 218 193 219 0.90 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF273-201 - 504 6e-20 70.7 33.1 4 12 0.005 3.1 7.6 0.0 5 26 225 246 221 247 0.89 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF273-201 - 504 6e-20 70.7 33.1 5 12 0.0025 1.6 8.6 0.1 6 26 254 274 252 275 0.91 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF273-201 - 504 6e-20 70.7 33.1 6 12 0.0035 2.2 8.1 0.0 5 26 281 302 278 303 0.93 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF273-201 - 504 6e-20 70.7 33.1 7 12 0.001 0.62 9.9 0.0 5 28 309 331 306 331 0.90 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF273-201 - 504 6e-20 70.7 33.1 8 12 0.0031 1.9 8.3 0.0 5 26 337 358 334 361 0.92 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF273-201 - 504 6e-20 70.7 33.1 9 12 0.0012 0.77 9.6 0.0 5 26 365 386 362 387 0.91 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF273-201 - 504 6e-20 70.7 33.1 10 12 0.25 1.6e+02 2.2 0.1 5 14 393 402 392 414 0.79 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF273-201 - 504 6e-20 70.7 33.1 11 12 0.0035 2.2 8.1 0.0 5 26 421 442 418 443 0.93 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF273-201 - 504 6e-20 70.7 33.1 12 12 0.0034 2.1 8.2 0.0 5 26 449 470 446 471 0.91 zinc-finger C2H2-type Zn-ribbon_8 PF09723.10 40 ZNF273-201 - 504 9.2e-17 60.9 70.8 1 13 0.86 5.3e+02 0.8 3.2 6 13 141 148 114 153 0.76 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF273-201 - 504 9.2e-17 60.9 70.8 2 13 0.51 3.2e+02 1.6 2.7 6 15 141 150 140 163 0.75 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF273-201 - 504 9.2e-17 60.9 70.8 3 13 0.0017 1 9.5 0.1 6 21 169 184 168 193 0.81 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF273-201 - 504 9.2e-17 60.9 70.8 4 13 0.00014 0.085 13.0 5.8 6 34 197 232 196 232 0.88 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF273-201 - 504 9.2e-17 60.9 70.8 5 13 0.00031 0.19 11.8 0.3 6 19 225 238 224 246 0.88 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF273-201 - 504 9.2e-17 60.9 70.8 6 13 0.00066 0.41 10.8 4.3 6 34 253 288 252 291 0.73 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF273-201 - 504 9.2e-17 60.9 70.8 7 13 9.7e-05 0.06 13.5 4.5 6 34 281 316 279 319 0.90 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF273-201 - 504 9.2e-17 60.9 70.8 8 13 5.4e-05 0.033 14.3 5.9 6 38 309 348 307 350 0.85 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF273-201 - 504 9.2e-17 60.9 70.8 9 13 0.0047 2.9 8.1 0.7 6 17 337 348 336 356 0.85 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF273-201 - 504 9.2e-17 60.9 70.8 10 13 2.5e-05 0.016 15.4 4.6 6 36 365 402 364 403 0.75 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF273-201 - 504 9.2e-17 60.9 70.8 11 13 0.0017 1.1 9.5 0.5 6 22 393 409 392 416 0.84 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF273-201 - 504 9.2e-17 60.9 70.8 12 13 2.1e-05 0.013 15.6 3.6 6 38 421 460 420 461 0.89 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF273-201 - 504 9.2e-17 60.9 70.8 13 13 0.0026 1.6 8.9 1.0 6 18 449 461 448 484 0.77 Zinc ribbon domain XPA_N PF01286.18 32 ZNF273-201 - 504 2.9e-15 56.0 52.3 1 12 1.1 6.7e+02 0.5 2.9 3 10 142 149 140 157 0.89 XPA protein N-terminal XPA_N PF01286.18 32 ZNF273-201 - 504 2.9e-15 56.0 52.3 2 12 0.13 83 3.3 0.2 3 12 170 179 169 184 0.91 XPA protein N-terminal XPA_N PF01286.18 32 ZNF273-201 - 504 2.9e-15 56.0 52.3 3 12 0.00045 0.28 11.3 0.1 3 15 198 210 196 215 0.87 XPA protein N-terminal XPA_N PF01286.18 32 ZNF273-201 - 504 2.9e-15 56.0 52.3 4 12 0.076 47 4.1 0.1 3 11 226 234 224 240 0.89 XPA protein N-terminal XPA_N PF01286.18 32 ZNF273-201 - 504 2.9e-15 56.0 52.3 5 12 0.0099 6.1 7.0 0.2 3 11 254 262 252 266 0.90 XPA protein N-terminal XPA_N PF01286.18 32 ZNF273-201 - 504 2.9e-15 56.0 52.3 6 12 0.01 6.2 7.0 0.1 3 14 282 293 280 298 0.86 XPA protein N-terminal XPA_N PF01286.18 32 ZNF273-201 - 504 2.9e-15 56.0 52.3 7 12 0.00074 0.46 10.6 0.1 3 14 310 321 308 326 0.90 XPA protein N-terminal XPA_N PF01286.18 32 ZNF273-201 - 504 2.9e-15 56.0 52.3 8 12 0.0008 0.49 10.5 0.1 3 14 338 349 336 355 0.88 XPA protein N-terminal XPA_N PF01286.18 32 ZNF273-201 - 504 2.9e-15 56.0 52.3 9 12 0.006 3.7 7.7 0.2 3 12 366 375 364 379 0.90 XPA protein N-terminal XPA_N PF01286.18 32 ZNF273-201 - 504 2.9e-15 56.0 52.3 10 12 0.013 7.8 6.6 0.1 3 11 394 402 392 408 0.91 XPA protein N-terminal XPA_N PF01286.18 32 ZNF273-201 - 504 2.9e-15 56.0 52.3 11 12 0.01 6.2 7.0 0.1 3 14 422 433 420 438 0.86 XPA protein N-terminal XPA_N PF01286.18 32 ZNF273-201 - 504 2.9e-15 56.0 52.3 12 12 0.0016 1 9.5 0.1 3 14 450 461 448 465 0.90 XPA protein N-terminal zf_UBZ PF18439.1 32 ZNF273-201 - 504 4.3e-13 48.6 55.1 1 13 1.1 7e+02 -0.1 0.2 24 29 48 53 48 53 0.97 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF273-201 - 504 4.3e-13 48.6 55.1 2 13 0.29 1.8e+02 1.8 2.9 3 12 141 150 139 160 0.72 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF273-201 - 504 4.3e-13 48.6 55.1 3 13 0.036 22 4.7 0.1 2 15 168 181 167 188 0.77 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF273-201 - 504 4.3e-13 48.6 55.1 4 13 0.0025 1.5 8.5 0.1 3 20 197 215 195 216 0.79 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF273-201 - 504 4.3e-13 48.6 55.1 5 13 0.002 1.2 8.8 0.1 3 15 225 237 223 243 0.85 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF273-201 - 504 4.3e-13 48.6 55.1 6 13 0.0051 3.1 7.4 0.1 3 16 253 267 251 272 0.78 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF273-201 - 504 4.3e-13 48.6 55.1 7 13 0.051 31 4.3 0.1 3 13 281 291 279 300 0.81 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF273-201 - 504 4.3e-13 48.6 55.1 8 13 0.0033 2 8.1 0.2 3 16 309 323 307 328 0.79 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF273-201 - 504 4.3e-13 48.6 55.1 9 13 0.0036 2.2 7.9 0.2 3 18 337 353 335 356 0.78 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF273-201 - 504 4.3e-13 48.6 55.1 10 13 0.0016 0.97 9.1 0.1 3 18 365 381 363 384 0.79 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF273-201 - 504 4.3e-13 48.6 55.1 11 13 0.0032 2 8.1 0.1 3 20 393 411 391 412 0.90 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF273-201 - 504 4.3e-13 48.6 55.1 12 13 0.051 31 4.3 0.1 3 13 421 431 419 440 0.81 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF273-201 - 504 4.3e-13 48.6 55.1 13 13 0.0053 3.3 7.4 0.1 3 15 449 461 447 468 0.78 Ubiquitin-Binding Zinc Finger zf-C2H2_jaz PF12171.8 27 ZNF273-201 - 504 5.1e-07 29.8 70.2 1 13 2.4 1.5e+03 -0.4 0.0 9 23 83 97 82 97 0.87 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF273-201 - 504 5.1e-07 29.8 70.2 2 13 5.3 3.3e+03 -1.5 5.0 2 11 141 150 140 162 0.72 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF273-201 - 504 5.1e-07 29.8 70.2 3 13 0.2 1.3e+02 3.1 1.2 2 12 169 179 169 188 0.79 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF273-201 - 504 5.1e-07 29.8 70.2 4 13 0.0015 0.96 9.8 0.3 2 22 197 217 196 217 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF273-201 - 504 5.1e-07 29.8 70.2 5 13 0.32 2e+02 2.4 0.3 2 12 225 235 224 244 0.86 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF273-201 - 504 5.1e-07 29.8 70.2 6 13 0.043 27 5.2 0.1 2 12 253 263 252 272 0.88 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF273-201 - 504 5.1e-07 29.8 70.2 7 13 0.023 14 6.1 0.2 2 22 281 301 280 301 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF273-201 - 504 5.1e-07 29.8 70.2 8 13 0.0018 1.1 9.6 0.1 2 21 309 328 308 329 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF273-201 - 504 5.1e-07 29.8 70.2 9 13 7.7e-05 0.048 14.0 0.1 2 22 337 357 336 357 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF273-201 - 504 5.1e-07 29.8 70.2 10 13 0.14 84 3.6 0.2 2 12 365 375 364 384 0.86 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF273-201 - 504 5.1e-07 29.8 70.2 11 13 4.6 2.8e+03 -1.2 0.1 2 7 393 398 392 403 0.82 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF273-201 - 504 5.1e-07 29.8 70.2 12 13 0.023 14 6.1 0.2 2 22 421 441 420 441 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF273-201 - 504 5.1e-07 29.8 70.2 13 13 0.00012 0.077 13.3 0.2 2 22 449 469 448 469 0.94 Zinc-finger double-stranded RNA-binding # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF273-201.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF273-201.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF273-201.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF273-201.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF273-201.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:02:55 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF273-202.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF273-202.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF273-202.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF273-202.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF273-202.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:02:56 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZNF273-204 - 569 2.5e-92 299.6 109.8 1 15 2.4 1.6e+03 -0.2 0.1 10 19 173 182 171 185 0.82 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF273-204 - 569 2.5e-92 299.6 109.8 2 15 5.1e-06 0.0034 17.7 3.5 5 23 196 214 192 215 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF273-204 - 569 2.5e-92 299.6 109.8 3 15 4.9e-05 0.032 14.7 0.8 2 25 221 244 220 245 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF273-204 - 569 2.5e-92 299.6 109.8 4 15 6.6e-09 4.4e-06 26.9 0.4 1 25 248 272 248 273 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF273-204 - 569 2.5e-92 299.6 109.8 5 15 2.6e-09 1.7e-06 28.1 2.4 2 25 277 300 276 300 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF273-204 - 569 2.5e-92 299.6 109.8 6 15 4.2e-09 2.8e-06 27.5 0.4 2 25 305 328 304 328 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF273-204 - 569 2.5e-92 299.6 109.8 7 15 1.7e-10 1.1e-07 31.9 0.9 2 25 333 356 332 356 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF273-204 - 569 2.5e-92 299.6 109.8 8 15 6.3e-12 4.2e-09 36.4 1.5 2 25 361 384 360 385 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF273-204 - 569 2.5e-92 299.6 109.8 9 15 4.1e-12 2.7e-09 37.0 1.7 2 26 389 413 388 413 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF273-204 - 569 2.5e-92 299.6 109.8 10 15 1.5e-07 0.0001 22.6 1.9 2 25 417 440 416 440 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF273-204 - 569 2.5e-92 299.6 109.8 11 15 1.3e-08 8.5e-06 26.0 0.3 2 24 445 467 444 469 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF273-204 - 569 2.5e-92 299.6 109.8 12 15 5.3e-11 3.5e-08 33.5 1.2 2 25 473 496 472 496 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF273-204 - 569 2.5e-92 299.6 109.8 13 15 8.1e-12 5.4e-09 36.1 1.9 2 25 501 524 500 525 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF273-204 - 569 2.5e-92 299.6 109.8 14 15 1.8e-07 0.00012 22.4 0.4 1 26 528 553 528 553 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF273-204 - 569 2.5e-92 299.6 109.8 15 15 0.004 2.7 8.6 0.6 1 13 556 568 556 569 0.93 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZNF273-204 - 569 2.4e-60 197.7 89.7 1 13 0.00033 0.22 12.1 4.5 1 22 206 227 206 227 0.95 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF273-204 - 569 2.4e-60 197.7 89.7 2 13 5.5e-08 3.6e-05 24.0 1.5 1 23 234 256 234 256 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF273-204 - 569 2.4e-60 197.7 89.7 3 13 3.7e-07 0.00025 21.3 0.8 1 23 262 284 262 284 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF273-204 - 569 2.4e-60 197.7 89.7 4 13 1.2e-06 0.00083 19.7 0.4 1 23 290 312 290 312 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF273-204 - 569 2.4e-60 197.7 89.7 5 13 1.8e-05 0.012 16.1 0.3 1 23 318 340 318 340 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF273-204 - 569 2.4e-60 197.7 89.7 6 13 4.8e-07 0.00032 21.0 0.9 1 23 346 368 346 368 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF273-204 - 569 2.4e-60 197.7 89.7 7 13 2.3e-08 1.5e-05 25.1 0.5 1 23 374 396 374 396 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF273-204 - 569 2.4e-60 197.7 89.7 8 13 5e-08 3.3e-05 24.1 0.6 1 21 402 422 402 423 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF273-204 - 569 2.4e-60 197.7 89.7 9 13 7.1e-07 0.00047 20.5 0.5 1 23 430 452 430 452 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF273-204 - 569 2.4e-60 197.7 89.7 10 13 8.3e-06 0.0055 17.1 0.4 1 23 458 480 458 480 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF273-204 - 569 2.4e-60 197.7 89.7 11 13 4.8e-07 0.00032 21.0 0.9 1 23 486 508 486 508 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF273-204 - 569 2.4e-60 197.7 89.7 12 13 1.2e-09 7.9e-07 29.2 1.1 1 23 514 536 514 536 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF273-204 - 569 2.4e-60 197.7 89.7 13 13 0.057 38 5.0 0.4 5 23 546 564 544 564 0.93 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZNF273-204 - 569 1.1e-31 106.7 85.5 1 13 0.0074 4.9 8.3 3.6 1 22 206 227 206 228 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF273-204 - 569 1.1e-31 106.7 85.5 2 13 0.00026 0.17 12.8 0.7 1 23 234 256 234 257 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF273-204 - 569 1.1e-31 106.7 85.5 3 13 3.7e-05 0.024 15.4 0.7 1 23 262 284 262 285 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF273-204 - 569 1.1e-31 106.7 85.5 4 13 0.00016 0.11 13.4 0.4 1 23 290 312 290 313 0.84 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF273-204 - 569 1.1e-31 106.7 85.5 5 13 0.00047 0.31 12.0 0.3 1 23 318 340 318 341 0.91 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF273-204 - 569 1.1e-31 106.7 85.5 6 13 0.00052 0.35 11.8 0.7 1 23 346 368 346 369 0.91 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF273-204 - 569 1.1e-31 106.7 85.5 7 13 1.7e-05 0.011 16.5 0.5 1 23 374 396 374 397 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF273-204 - 569 1.1e-31 106.7 85.5 8 13 3.8e-05 0.025 15.4 0.5 1 21 402 422 402 424 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF273-204 - 569 1.1e-31 106.7 85.5 9 13 9.3e-05 0.062 14.2 0.5 1 23 430 452 430 453 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF273-204 - 569 1.1e-31 106.7 85.5 10 13 0.0027 1.8 9.6 0.6 1 23 458 480 458 481 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF273-204 - 569 1.1e-31 106.7 85.5 11 13 0.00052 0.35 11.8 0.7 1 23 486 508 486 509 0.91 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF273-204 - 569 1.1e-31 106.7 85.5 12 13 4.4e-06 0.0029 18.3 0.8 1 23 514 536 514 537 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF273-204 - 569 1.1e-31 106.7 85.5 13 13 0.25 1.7e+02 3.5 0.3 6 23 547 564 545 565 0.88 C2H2-type zinc finger KRAB PF01352.27 42 ZNF273-204 - 569 7.4e-23 79.9 0.2 1 1 1.9e-25 1.3e-22 79.2 0.2 1 42 36 77 36 77 0.98 KRAB box zf-C2H2_6 PF13912.6 27 ZNF273-204 - 569 3.9e-22 77.7 94.2 1 13 0.15 98 3.1 4.2 2 10 206 214 206 227 0.88 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF273-204 - 569 3.9e-22 77.7 94.2 2 13 3.7e-07 0.00025 21.0 0.6 2 25 234 257 233 259 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF273-204 - 569 3.9e-22 77.7 94.2 3 13 0.0012 0.8 9.8 1.5 2 24 262 284 262 287 0.90 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF273-204 - 569 3.9e-22 77.7 94.2 4 13 0.0002 0.13 12.3 0.3 2 24 290 312 290 314 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF273-204 - 569 3.9e-22 77.7 94.2 5 13 0.00046 0.31 11.1 0.4 2 24 318 340 318 343 0.92 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF273-204 - 569 3.9e-22 77.7 94.2 6 13 0.00036 0.24 11.5 0.8 2 24 346 368 346 371 0.89 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF273-204 - 569 3.9e-22 77.7 94.2 7 13 0.0044 2.9 8.0 0.6 2 21 374 393 374 398 0.78 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF273-204 - 569 3.9e-22 77.7 94.2 8 13 7e-05 0.046 13.7 1.1 2 22 402 422 402 427 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF273-204 - 569 3.9e-22 77.7 94.2 9 13 0.00033 0.22 11.6 0.9 2 24 430 452 430 453 0.92 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF273-204 - 569 3.9e-22 77.7 94.2 10 13 0.002 1.3 9.1 0.8 2 24 458 480 458 483 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF273-204 - 569 3.9e-22 77.7 94.2 11 13 0.00036 0.24 11.5 0.8 2 24 486 508 486 511 0.89 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF273-204 - 569 3.9e-22 77.7 94.2 12 13 2.6e-05 0.017 15.1 1.2 2 24 514 536 514 539 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF273-204 - 569 3.9e-22 77.7 94.2 13 13 1.9 1.3e+03 -0.4 0.7 20 26 560 566 559 567 0.87 C2H2-type zinc finger zf-C2H2_11 PF16622.5 29 ZNF273-204 - 569 3.8e-19 68.1 33.4 1 12 8 5.3e+03 -2.7 3.4 5 11 206 212 205 221 0.86 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF273-204 - 569 3.8e-19 68.1 33.4 2 12 0.14 93 2.9 0.3 5 26 234 255 232 256 0.84 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF273-204 - 569 3.8e-19 68.1 33.4 3 12 0.0012 0.81 9.5 0.0 5 26 262 283 258 284 0.90 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF273-204 - 569 3.8e-19 68.1 33.4 4 12 0.0053 3.6 7.4 0.0 5 26 290 311 286 312 0.89 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF273-204 - 569 3.8e-19 68.1 33.4 5 12 0.0027 1.8 8.4 0.1 6 26 319 339 317 340 0.91 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF273-204 - 569 3.8e-19 68.1 33.4 6 12 0.0038 2.5 7.9 0.0 5 26 346 367 343 368 0.93 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF273-204 - 569 3.8e-19 68.1 33.4 7 12 0.0011 0.71 9.7 0.0 5 28 374 396 371 396 0.90 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF273-204 - 569 3.8e-19 68.1 33.4 8 12 0.0034 2.2 8.1 0.0 5 26 402 423 399 426 0.92 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF273-204 - 569 3.8e-19 68.1 33.4 9 12 0.0013 0.88 9.4 0.0 5 26 430 451 427 452 0.91 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF273-204 - 569 3.8e-19 68.1 33.4 10 12 0.27 1.8e+02 2.0 0.1 5 14 458 467 457 479 0.79 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF273-204 - 569 3.8e-19 68.1 33.4 11 12 0.0038 2.5 7.9 0.0 5 26 486 507 483 508 0.93 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF273-204 - 569 3.8e-19 68.1 33.4 12 12 0.0037 2.4 8.0 0.0 5 26 514 535 511 536 0.91 zinc-finger C2H2-type Zn-ribbon_8 PF09723.10 40 ZNF273-204 - 569 4.9e-16 58.6 71.0 1 13 0.91 6.1e+02 0.7 3.2 6 13 206 213 179 218 0.76 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF273-204 - 569 4.9e-16 58.6 71.0 2 13 0.54 3.6e+02 1.4 2.7 6 15 206 215 205 228 0.75 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF273-204 - 569 4.9e-16 58.6 71.0 3 13 0.0018 1.2 9.3 0.1 6 21 234 249 233 258 0.81 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF273-204 - 569 4.9e-16 58.6 71.0 4 13 0.00015 0.1 12.8 5.8 6 34 262 297 261 297 0.88 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF273-204 - 569 4.9e-16 58.6 71.0 5 13 0.00034 0.23 11.6 0.3 6 19 290 303 289 311 0.88 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF273-204 - 569 4.9e-16 58.6 71.0 6 13 0.00068 0.45 10.7 4.3 6 34 318 353 315 356 0.74 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF273-204 - 569 4.9e-16 58.6 71.0 7 13 0.00011 0.07 13.3 4.5 6 34 346 381 345 384 0.89 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF273-204 - 569 4.9e-16 58.6 71.0 8 13 6.4e-05 0.043 14.0 6.0 6 38 374 413 373 415 0.85 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF273-204 - 569 4.9e-16 58.6 71.0 9 13 0.0052 3.4 7.9 0.7 6 17 402 413 401 421 0.85 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF273-204 - 569 4.9e-16 58.6 71.0 10 13 2.4e-05 0.016 15.3 4.8 6 37 430 468 429 470 0.75 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF273-204 - 569 4.9e-16 58.6 71.0 11 13 0.0019 1.2 9.3 0.5 6 22 458 474 457 481 0.84 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF273-204 - 569 4.9e-16 58.6 71.0 12 13 2.3e-05 0.015 15.4 3.6 6 38 486 525 485 526 0.89 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF273-204 - 569 4.9e-16 58.6 71.0 13 13 0.0027 1.8 8.7 1.0 6 18 514 526 512 551 0.78 Zinc ribbon domain XPA_N PF01286.18 32 ZNF273-204 - 569 1.5e-14 53.7 52.2 1 12 1.2 7.6e+02 0.3 2.9 3 10 207 214 205 222 0.89 XPA protein N-terminal XPA_N PF01286.18 32 ZNF273-204 - 569 1.5e-14 53.7 52.2 2 12 0.14 95 3.2 0.2 3 12 235 244 234 249 0.91 XPA protein N-terminal XPA_N PF01286.18 32 ZNF273-204 - 569 1.5e-14 53.7 52.2 3 12 0.00049 0.32 11.1 0.1 3 15 263 275 261 280 0.87 XPA protein N-terminal XPA_N PF01286.18 32 ZNF273-204 - 569 1.5e-14 53.7 52.2 4 12 0.081 54 3.9 0.1 3 11 291 299 289 305 0.89 XPA protein N-terminal XPA_N PF01286.18 32 ZNF273-204 - 569 1.5e-14 53.7 52.2 5 12 0.011 7 6.8 0.2 3 11 319 327 317 331 0.90 XPA protein N-terminal XPA_N PF01286.18 32 ZNF273-204 - 569 1.5e-14 53.7 52.2 6 12 0.011 7.1 6.8 0.1 3 14 347 358 345 363 0.86 XPA protein N-terminal XPA_N PF01286.18 32 ZNF273-204 - 569 1.5e-14 53.7 52.2 7 12 0.00079 0.52 10.4 0.1 3 14 375 386 373 391 0.90 XPA protein N-terminal XPA_N PF01286.18 32 ZNF273-204 - 569 1.5e-14 53.7 52.2 8 12 0.00085 0.57 10.3 0.1 3 14 403 414 401 420 0.88 XPA protein N-terminal XPA_N PF01286.18 32 ZNF273-204 - 569 1.5e-14 53.7 52.2 9 12 0.0064 4.2 7.5 0.2 3 12 431 440 429 444 0.90 XPA protein N-terminal XPA_N PF01286.18 32 ZNF273-204 - 569 1.5e-14 53.7 52.2 10 12 0.013 8.9 6.5 0.1 3 11 459 467 457 473 0.91 XPA protein N-terminal XPA_N PF01286.18 32 ZNF273-204 - 569 1.5e-14 53.7 52.2 11 12 0.011 7.1 6.8 0.1 3 14 487 498 485 503 0.86 XPA protein N-terminal XPA_N PF01286.18 32 ZNF273-204 - 569 1.5e-14 53.7 52.2 12 12 0.0017 1.2 9.3 0.1 3 14 515 526 513 530 0.90 XPA protein N-terminal zf_UBZ PF18439.1 32 ZNF273-204 - 569 2.5e-12 46.2 55.1 1 13 1.2 8e+02 -0.2 0.2 24 29 113 118 113 118 0.97 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF273-204 - 569 2.5e-12 46.2 55.1 2 13 0.31 2.1e+02 1.6 2.9 3 12 206 215 204 225 0.72 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF273-204 - 569 2.5e-12 46.2 55.1 3 13 0.039 26 4.5 0.1 2 15 233 246 232 253 0.77 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF273-204 - 569 2.5e-12 46.2 55.1 4 13 0.0026 1.7 8.3 0.1 3 20 262 280 260 281 0.79 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF273-204 - 569 2.5e-12 46.2 55.1 5 13 0.0021 1.4 8.6 0.1 3 15 290 302 288 308 0.85 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF273-204 - 569 2.5e-12 46.2 55.1 6 13 0.0054 3.6 7.3 0.1 3 16 318 332 316 337 0.78 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF273-204 - 569 2.5e-12 46.2 55.1 7 13 0.054 36 4.1 0.1 3 13 346 356 344 365 0.81 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF273-204 - 569 2.5e-12 46.2 55.1 8 13 0.0035 2.3 7.9 0.2 3 16 374 388 372 393 0.79 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF273-204 - 569 2.5e-12 46.2 55.1 9 13 0.0038 2.5 7.7 0.2 3 18 402 418 400 421 0.78 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF273-204 - 569 2.5e-12 46.2 55.1 10 13 0.0017 1.1 8.9 0.1 3 18 430 446 428 449 0.79 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF273-204 - 569 2.5e-12 46.2 55.1 11 13 0.0034 2.3 7.9 0.1 3 20 458 476 456 477 0.90 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF273-204 - 569 2.5e-12 46.2 55.1 12 13 0.054 36 4.1 0.1 3 13 486 496 484 505 0.81 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF273-204 - 569 2.5e-12 46.2 55.1 13 13 0.0057 3.8 7.2 0.1 3 15 514 526 512 533 0.78 Ubiquitin-Binding Zinc Finger # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF273-204.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF273-204.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF273-204.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF273-204.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF273-204.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:02:56 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF273-205.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF273-205.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF273-205.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF273-205.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF273-205.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:02:57 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF273-206.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF273-206.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF273-206.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF273-206.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF273-206.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:02:57 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZNF273-207 - 504 3e-93 302.4 109.8 1 15 2.3 1.4e+03 -0.0 0.1 10 19 108 117 106 120 0.82 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF273-207 - 504 3e-93 302.4 109.8 2 15 4.8e-06 0.0029 17.9 3.5 5 23 131 149 127 150 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF273-207 - 504 3e-93 302.4 109.8 3 15 4.5e-05 0.028 14.9 0.8 2 25 156 179 155 180 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF273-207 - 504 3e-93 302.4 109.8 4 15 6.1e-09 3.8e-06 27.1 0.4 1 25 183 207 183 208 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF273-207 - 504 3e-93 302.4 109.8 5 15 2.4e-09 1.5e-06 28.3 2.4 2 25 212 235 211 235 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF273-207 - 504 3e-93 302.4 109.8 6 15 3.9e-09 2.4e-06 27.7 0.4 2 25 240 263 239 263 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF273-207 - 504 3e-93 302.4 109.8 7 15 1.6e-10 9.6e-08 32.1 0.9 2 25 268 291 267 291 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF273-207 - 504 3e-93 302.4 109.8 8 15 5.9e-12 3.6e-09 36.6 1.5 2 25 296 319 295 320 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF273-207 - 504 3e-93 302.4 109.8 9 15 3.8e-12 2.3e-09 37.2 1.7 2 26 324 348 323 348 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF273-207 - 504 3e-93 302.4 109.8 10 15 1.4e-07 8.7e-05 22.8 1.9 2 25 352 375 351 375 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF273-207 - 504 3e-93 302.4 109.8 11 15 1.2e-08 7.4e-06 26.2 0.3 2 24 380 402 379 404 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF273-207 - 504 3e-93 302.4 109.8 12 15 4.9e-11 3e-08 33.7 1.2 2 25 408 431 407 431 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF273-207 - 504 3e-93 302.4 109.8 13 15 7.5e-12 4.6e-09 36.3 1.9 2 25 436 459 435 460 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF273-207 - 504 3e-93 302.4 109.8 14 15 1.6e-07 0.0001 22.6 0.4 1 26 463 488 463 488 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF273-207 - 504 3e-93 302.4 109.8 15 15 0.0038 2.3 8.8 0.6 1 13 491 503 491 504 0.93 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZNF273-207 - 504 9.3e-61 199.0 91.0 1 13 0.00031 0.19 12.2 4.5 1 22 141 162 141 162 0.95 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF273-207 - 504 9.3e-61 199.0 91.0 2 13 5.1e-08 3.1e-05 24.2 1.5 1 23 169 191 169 191 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF273-207 - 504 9.3e-61 199.0 91.0 3 13 3.5e-07 0.00022 21.5 0.8 1 23 197 219 197 219 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF273-207 - 504 9.3e-61 199.0 91.0 4 13 1.2e-06 0.00072 19.9 0.4 1 23 225 247 225 247 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF273-207 - 504 9.3e-61 199.0 91.0 5 13 1.7e-05 0.01 16.2 0.3 1 23 253 275 253 275 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF273-207 - 504 9.3e-61 199.0 91.0 6 13 4.5e-07 0.00028 21.2 0.9 1 23 281 303 281 303 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF273-207 - 504 9.3e-61 199.0 91.0 7 13 2.1e-08 1.3e-05 25.3 0.5 1 23 309 331 309 331 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF273-207 - 504 9.3e-61 199.0 91.0 8 13 4.7e-08 2.9e-05 24.3 0.6 1 21 337 357 337 358 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF273-207 - 504 9.3e-61 199.0 91.0 9 13 6.6e-07 0.00041 20.7 0.5 1 23 365 387 365 387 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF273-207 - 504 9.3e-61 199.0 91.0 10 13 7.7e-06 0.0048 17.3 0.4 1 23 393 415 393 415 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF273-207 - 504 9.3e-61 199.0 91.0 11 13 4.5e-07 0.00028 21.2 0.9 1 23 421 443 421 443 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF273-207 - 504 9.3e-61 199.0 91.0 12 13 1.1e-09 6.8e-07 29.4 1.1 1 23 449 471 449 471 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF273-207 - 504 9.3e-61 199.0 91.0 13 13 0.053 33 5.2 0.4 5 23 481 499 479 499 0.93 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZNF273-207 - 504 1.7e-32 109.2 85.5 1 13 0.0069 4.3 8.5 3.6 1 22 141 162 141 163 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF273-207 - 504 1.7e-32 109.2 85.5 2 13 0.00024 0.15 13.0 0.7 1 23 169 191 169 192 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF273-207 - 504 1.7e-32 109.2 85.5 3 13 3.4e-05 0.021 15.6 0.7 1 23 197 219 197 220 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF273-207 - 504 1.7e-32 109.2 85.5 4 13 0.00015 0.093 13.6 0.4 1 23 225 247 225 248 0.84 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF273-207 - 504 1.7e-32 109.2 85.5 5 13 0.00044 0.27 12.2 0.3 1 23 253 275 253 276 0.91 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF273-207 - 504 1.7e-32 109.2 85.5 6 13 0.00048 0.3 12.0 0.7 1 23 281 303 281 304 0.91 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF273-207 - 504 1.7e-32 109.2 85.5 7 13 1.6e-05 0.0096 16.7 0.5 1 23 309 331 309 332 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF273-207 - 504 1.7e-32 109.2 85.5 8 13 3.5e-05 0.022 15.6 0.5 1 21 337 357 337 359 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF273-207 - 504 1.7e-32 109.2 85.5 9 13 8.6e-05 0.053 14.4 0.5 1 23 365 387 365 388 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF273-207 - 504 1.7e-32 109.2 85.5 10 13 0.0025 1.6 9.8 0.6 1 23 393 415 393 416 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF273-207 - 504 1.7e-32 109.2 85.5 11 13 0.00048 0.3 12.0 0.7 1 23 421 443 421 444 0.91 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF273-207 - 504 1.7e-32 109.2 85.5 12 13 4.1e-06 0.0025 18.5 0.8 1 23 449 471 449 472 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF273-207 - 504 1.7e-32 109.2 85.5 13 13 0.23 1.4e+02 3.7 0.3 6 23 482 499 480 500 0.88 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF273-207 - 504 6.6e-23 80.2 94.2 1 13 0.14 86 3.3 4.2 2 10 141 149 141 162 0.88 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF273-207 - 504 6.6e-23 80.2 94.2 2 13 3.5e-07 0.00021 21.2 0.6 2 25 169 192 168 194 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF273-207 - 504 6.6e-23 80.2 94.2 3 13 0.0011 0.69 10.0 1.5 2 24 197 219 197 222 0.90 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF273-207 - 504 6.6e-23 80.2 94.2 4 13 0.00019 0.12 12.5 0.3 2 24 225 247 225 249 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF273-207 - 504 6.6e-23 80.2 94.2 5 13 0.00043 0.26 11.3 0.4 2 24 253 275 253 278 0.92 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF273-207 - 504 6.6e-23 80.2 94.2 6 13 0.00033 0.21 11.7 0.8 2 24 281 303 281 306 0.89 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF273-207 - 504 6.6e-23 80.2 94.2 7 13 0.0041 2.5 8.2 0.6 2 21 309 328 309 333 0.78 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF273-207 - 504 6.6e-23 80.2 94.2 8 13 6.5e-05 0.04 13.9 1.1 2 22 337 357 337 362 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF273-207 - 504 6.6e-23 80.2 94.2 9 13 0.00031 0.19 11.8 0.9 2 24 365 387 365 388 0.92 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF273-207 - 504 6.6e-23 80.2 94.2 10 13 0.0018 1.1 9.3 0.8 2 24 393 415 393 418 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF273-207 - 504 6.6e-23 80.2 94.2 11 13 0.00033 0.21 11.7 0.8 2 24 421 443 421 446 0.89 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF273-207 - 504 6.6e-23 80.2 94.2 12 13 2.4e-05 0.015 15.3 1.2 2 24 449 471 449 474 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF273-207 - 504 6.6e-23 80.2 94.2 13 13 1.8 1.1e+03 -0.3 0.7 20 26 495 501 494 502 0.87 C2H2-type zinc finger zf-C2H2_11 PF16622.5 29 ZNF273-207 - 504 6e-20 70.7 33.1 1 12 5.4 3.3e+03 -2.1 3.0 5 11 141 147 139 157 0.87 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF273-207 - 504 6e-20 70.7 33.1 2 12 0.13 81 3.1 0.3 5 26 169 190 167 191 0.84 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF273-207 - 504 6e-20 70.7 33.1 3 12 0.0011 0.7 9.7 0.0 5 26 197 218 193 219 0.90 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF273-207 - 504 6e-20 70.7 33.1 4 12 0.005 3.1 7.6 0.0 5 26 225 246 221 247 0.89 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF273-207 - 504 6e-20 70.7 33.1 5 12 0.0025 1.6 8.6 0.1 6 26 254 274 252 275 0.91 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF273-207 - 504 6e-20 70.7 33.1 6 12 0.0035 2.2 8.1 0.0 5 26 281 302 278 303 0.93 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF273-207 - 504 6e-20 70.7 33.1 7 12 0.001 0.62 9.9 0.0 5 28 309 331 306 331 0.90 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF273-207 - 504 6e-20 70.7 33.1 8 12 0.0031 1.9 8.3 0.0 5 26 337 358 334 361 0.92 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF273-207 - 504 6e-20 70.7 33.1 9 12 0.0012 0.77 9.6 0.0 5 26 365 386 362 387 0.91 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF273-207 - 504 6e-20 70.7 33.1 10 12 0.25 1.6e+02 2.2 0.1 5 14 393 402 392 414 0.79 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF273-207 - 504 6e-20 70.7 33.1 11 12 0.0035 2.2 8.1 0.0 5 26 421 442 418 443 0.93 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF273-207 - 504 6e-20 70.7 33.1 12 12 0.0034 2.1 8.2 0.0 5 26 449 470 446 471 0.91 zinc-finger C2H2-type Zn-ribbon_8 PF09723.10 40 ZNF273-207 - 504 9.2e-17 60.9 70.8 1 13 0.86 5.3e+02 0.8 3.2 6 13 141 148 114 153 0.76 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF273-207 - 504 9.2e-17 60.9 70.8 2 13 0.51 3.2e+02 1.6 2.7 6 15 141 150 140 163 0.75 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF273-207 - 504 9.2e-17 60.9 70.8 3 13 0.0017 1 9.5 0.1 6 21 169 184 168 193 0.81 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF273-207 - 504 9.2e-17 60.9 70.8 4 13 0.00014 0.085 13.0 5.8 6 34 197 232 196 232 0.88 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF273-207 - 504 9.2e-17 60.9 70.8 5 13 0.00031 0.19 11.8 0.3 6 19 225 238 224 246 0.88 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF273-207 - 504 9.2e-17 60.9 70.8 6 13 0.00066 0.41 10.8 4.3 6 34 253 288 252 291 0.73 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF273-207 - 504 9.2e-17 60.9 70.8 7 13 9.7e-05 0.06 13.5 4.5 6 34 281 316 279 319 0.90 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF273-207 - 504 9.2e-17 60.9 70.8 8 13 5.4e-05 0.033 14.3 5.9 6 38 309 348 307 350 0.85 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF273-207 - 504 9.2e-17 60.9 70.8 9 13 0.0047 2.9 8.1 0.7 6 17 337 348 336 356 0.85 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF273-207 - 504 9.2e-17 60.9 70.8 10 13 2.5e-05 0.016 15.4 4.6 6 36 365 402 364 403 0.75 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF273-207 - 504 9.2e-17 60.9 70.8 11 13 0.0017 1.1 9.5 0.5 6 22 393 409 392 416 0.84 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF273-207 - 504 9.2e-17 60.9 70.8 12 13 2.1e-05 0.013 15.6 3.6 6 38 421 460 420 461 0.89 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF273-207 - 504 9.2e-17 60.9 70.8 13 13 0.0026 1.6 8.9 1.0 6 18 449 461 448 484 0.77 Zinc ribbon domain XPA_N PF01286.18 32 ZNF273-207 - 504 2.9e-15 56.0 52.3 1 12 1.1 6.7e+02 0.5 2.9 3 10 142 149 140 157 0.89 XPA protein N-terminal XPA_N PF01286.18 32 ZNF273-207 - 504 2.9e-15 56.0 52.3 2 12 0.13 83 3.3 0.2 3 12 170 179 169 184 0.91 XPA protein N-terminal XPA_N PF01286.18 32 ZNF273-207 - 504 2.9e-15 56.0 52.3 3 12 0.00045 0.28 11.3 0.1 3 15 198 210 196 215 0.87 XPA protein N-terminal XPA_N PF01286.18 32 ZNF273-207 - 504 2.9e-15 56.0 52.3 4 12 0.076 47 4.1 0.1 3 11 226 234 224 240 0.89 XPA protein N-terminal XPA_N PF01286.18 32 ZNF273-207 - 504 2.9e-15 56.0 52.3 5 12 0.0099 6.1 7.0 0.2 3 11 254 262 252 266 0.90 XPA protein N-terminal XPA_N PF01286.18 32 ZNF273-207 - 504 2.9e-15 56.0 52.3 6 12 0.01 6.2 7.0 0.1 3 14 282 293 280 298 0.86 XPA protein N-terminal XPA_N PF01286.18 32 ZNF273-207 - 504 2.9e-15 56.0 52.3 7 12 0.00074 0.46 10.6 0.1 3 14 310 321 308 326 0.90 XPA protein N-terminal XPA_N PF01286.18 32 ZNF273-207 - 504 2.9e-15 56.0 52.3 8 12 0.0008 0.49 10.5 0.1 3 14 338 349 336 355 0.88 XPA protein N-terminal XPA_N PF01286.18 32 ZNF273-207 - 504 2.9e-15 56.0 52.3 9 12 0.006 3.7 7.7 0.2 3 12 366 375 364 379 0.90 XPA protein N-terminal XPA_N PF01286.18 32 ZNF273-207 - 504 2.9e-15 56.0 52.3 10 12 0.013 7.8 6.6 0.1 3 11 394 402 392 408 0.91 XPA protein N-terminal XPA_N PF01286.18 32 ZNF273-207 - 504 2.9e-15 56.0 52.3 11 12 0.01 6.2 7.0 0.1 3 14 422 433 420 438 0.86 XPA protein N-terminal XPA_N PF01286.18 32 ZNF273-207 - 504 2.9e-15 56.0 52.3 12 12 0.0016 1 9.5 0.1 3 14 450 461 448 465 0.90 XPA protein N-terminal zf_UBZ PF18439.1 32 ZNF273-207 - 504 4.3e-13 48.6 55.1 1 13 1.1 7e+02 -0.1 0.2 24 29 48 53 48 53 0.97 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF273-207 - 504 4.3e-13 48.6 55.1 2 13 0.29 1.8e+02 1.8 2.9 3 12 141 150 139 160 0.72 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF273-207 - 504 4.3e-13 48.6 55.1 3 13 0.036 22 4.7 0.1 2 15 168 181 167 188 0.77 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF273-207 - 504 4.3e-13 48.6 55.1 4 13 0.0025 1.5 8.5 0.1 3 20 197 215 195 216 0.79 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF273-207 - 504 4.3e-13 48.6 55.1 5 13 0.002 1.2 8.8 0.1 3 15 225 237 223 243 0.85 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF273-207 - 504 4.3e-13 48.6 55.1 6 13 0.0051 3.1 7.4 0.1 3 16 253 267 251 272 0.78 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF273-207 - 504 4.3e-13 48.6 55.1 7 13 0.051 31 4.3 0.1 3 13 281 291 279 300 0.81 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF273-207 - 504 4.3e-13 48.6 55.1 8 13 0.0033 2 8.1 0.2 3 16 309 323 307 328 0.79 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF273-207 - 504 4.3e-13 48.6 55.1 9 13 0.0036 2.2 7.9 0.2 3 18 337 353 335 356 0.78 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF273-207 - 504 4.3e-13 48.6 55.1 10 13 0.0016 0.97 9.1 0.1 3 18 365 381 363 384 0.79 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF273-207 - 504 4.3e-13 48.6 55.1 11 13 0.0032 2 8.1 0.1 3 20 393 411 391 412 0.90 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF273-207 - 504 4.3e-13 48.6 55.1 12 13 0.051 31 4.3 0.1 3 13 421 431 419 440 0.81 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF273-207 - 504 4.3e-13 48.6 55.1 13 13 0.0053 3.3 7.4 0.1 3 15 449 461 447 468 0.78 Ubiquitin-Binding Zinc Finger zf-C2H2_jaz PF12171.8 27 ZNF273-207 - 504 5.1e-07 29.8 70.2 1 13 2.4 1.5e+03 -0.4 0.0 9 23 83 97 82 97 0.87 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF273-207 - 504 5.1e-07 29.8 70.2 2 13 5.3 3.3e+03 -1.5 5.0 2 11 141 150 140 162 0.72 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF273-207 - 504 5.1e-07 29.8 70.2 3 13 0.2 1.3e+02 3.1 1.2 2 12 169 179 169 188 0.79 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF273-207 - 504 5.1e-07 29.8 70.2 4 13 0.0015 0.96 9.8 0.3 2 22 197 217 196 217 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF273-207 - 504 5.1e-07 29.8 70.2 5 13 0.32 2e+02 2.4 0.3 2 12 225 235 224 244 0.86 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF273-207 - 504 5.1e-07 29.8 70.2 6 13 0.043 27 5.2 0.1 2 12 253 263 252 272 0.88 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF273-207 - 504 5.1e-07 29.8 70.2 7 13 0.023 14 6.1 0.2 2 22 281 301 280 301 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF273-207 - 504 5.1e-07 29.8 70.2 8 13 0.0018 1.1 9.6 0.1 2 21 309 328 308 329 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF273-207 - 504 5.1e-07 29.8 70.2 9 13 7.7e-05 0.048 14.0 0.1 2 22 337 357 336 357 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF273-207 - 504 5.1e-07 29.8 70.2 10 13 0.14 84 3.6 0.2 2 12 365 375 364 384 0.86 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF273-207 - 504 5.1e-07 29.8 70.2 11 13 4.6 2.8e+03 -1.2 0.1 2 7 393 398 392 403 0.82 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF273-207 - 504 5.1e-07 29.8 70.2 12 13 0.023 14 6.1 0.2 2 22 421 441 420 441 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF273-207 - 504 5.1e-07 29.8 70.2 13 13 0.00012 0.077 13.3 0.2 2 22 449 469 448 469 0.94 Zinc-finger double-stranded RNA-binding # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF273-207.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF273-207.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF273-207.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF273-207.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF273-207.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:02:57 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- SCAN PF02023.17 90 ZNF274-201 - 611 1.4e-38 130.6 4.0 1 1 4.1e-41 3.7e-38 129.2 4.0 1 89 115 203 115 204 0.97 SCAN domain zf-C2H2 PF00096.26 23 ZNF274-201 - 611 3.1e-29 99.8 39.5 1 6 0.54 4.8e+02 1.5 0.2 5 13 441 449 438 451 0.87 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF274-201 - 611 3.1e-29 99.8 39.5 2 6 2.8e-05 0.025 15.0 3.1 2 23 466 487 465 487 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF274-201 - 611 3.1e-29 99.8 39.5 3 6 3.7e-09 3.3e-06 27.3 0.3 1 23 493 515 493 515 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF274-201 - 611 3.1e-29 99.8 39.5 4 6 2.6e-07 0.00024 21.4 0.4 1 23 521 543 521 543 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF274-201 - 611 3.1e-29 99.8 39.5 5 6 2e-10 1.8e-07 31.3 3.0 1 23 549 571 549 571 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF274-201 - 611 3.1e-29 99.8 39.5 6 6 1.1e-08 9.5e-06 25.8 1.3 1 23 577 599 577 599 0.98 Zinc finger, C2H2 type zf-H2C2_2 PF13465.6 26 ZNF274-201 - 611 1.6e-28 97.8 36.4 1 6 5.4 4.8e+03 -1.7 0.1 20 25 442 447 441 448 0.88 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF274-201 - 611 1.6e-28 97.8 36.4 2 6 0.075 67 4.2 0.3 6 25 456 475 456 476 0.83 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF274-201 - 611 1.6e-28 97.8 36.4 3 6 8.6e-09 7.7e-06 26.1 0.4 2 25 480 503 479 504 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF274-201 - 611 1.6e-28 97.8 36.4 4 6 8.2e-10 7.3e-07 29.3 0.1 1 25 507 531 507 532 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF274-201 - 611 1.6e-28 97.8 36.4 5 6 8.2e-10 7.3e-07 29.3 0.2 3 25 537 559 535 560 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF274-201 - 611 1.6e-28 97.8 36.4 6 6 2.4e-11 2.1e-08 34.2 1.2 1 25 563 587 563 588 0.95 Zinc-finger double domain KRAB PF01352.27 42 ZNF274-201 - 611 2.3e-27 94.4 1.0 1 2 4e-05 0.036 13.7 0.2 31 42 1 12 1 12 0.98 KRAB box KRAB PF01352.27 42 ZNF274-201 - 611 2.3e-27 94.4 1.0 2 2 2.3e-25 2.1e-22 78.5 0.0 1 42 244 285 244 285 0.99 KRAB box zf-C2H2_4 PF13894.6 24 ZNF274-201 - 611 6.8e-17 60.7 34.9 1 6 2.3 2e+03 0.1 0.0 6 15 442 451 440 461 0.71 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF274-201 - 611 6.8e-17 60.7 34.9 2 6 0.00044 0.39 11.7 2.5 2 23 466 487 465 488 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF274-201 - 611 6.8e-17 60.7 34.9 3 6 3.3e-05 0.03 15.2 0.4 1 23 493 515 493 516 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF274-201 - 611 6.8e-17 60.7 34.9 4 6 7.4e-07 0.00066 20.3 0.3 1 23 521 543 521 544 0.97 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF274-201 - 611 6.8e-17 60.7 34.9 5 6 4.4e-06 0.0039 17.9 2.0 1 23 549 571 549 572 0.97 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF274-201 - 611 6.8e-17 60.7 34.9 6 6 2.8e-05 0.025 15.4 0.8 1 23 577 599 577 600 0.95 C2H2-type zinc finger # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF274-201.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF274-201.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF274-201.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF274-201.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF274-201.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:02:58 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- KRAB PF01352.27 42 ZNF274-202 - 621 1.7e-48 162.0 0.4 1 2 3.8e-26 3.4e-23 81.0 0.1 1 42 13 54 13 54 0.99 KRAB box KRAB PF01352.27 42 ZNF274-202 - 621 1.7e-48 162.0 0.4 2 2 2.4e-25 2.1e-22 78.5 0.0 1 42 254 295 254 295 0.99 KRAB box SCAN PF02023.17 90 ZNF274-202 - 621 1.5e-38 130.5 4.0 1 1 4.2e-41 3.8e-38 129.2 4.0 1 89 125 213 125 214 0.97 SCAN domain zf-C2H2 PF00096.26 23 ZNF274-202 - 621 3.4e-29 99.7 39.5 1 6 0.55 4.9e+02 1.5 0.2 5 13 451 459 448 461 0.87 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF274-202 - 621 3.4e-29 99.7 39.5 2 6 2.8e-05 0.025 15.0 3.1 2 23 476 497 475 497 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF274-202 - 621 3.4e-29 99.7 39.5 3 6 3.7e-09 3.3e-06 27.2 0.3 1 23 503 525 503 525 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF274-202 - 621 3.4e-29 99.7 39.5 4 6 2.7e-07 0.00024 21.4 0.4 1 23 531 553 531 553 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF274-202 - 621 3.4e-29 99.7 39.5 5 6 2e-10 1.8e-07 31.2 3.0 1 23 559 581 559 581 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF274-202 - 621 3.4e-29 99.7 39.5 6 6 1.1e-08 9.7e-06 25.8 1.3 1 23 587 609 587 609 0.98 Zinc finger, C2H2 type zf-H2C2_2 PF13465.6 26 ZNF274-202 - 621 1.7e-28 97.7 36.4 1 6 5.5 4.9e+03 -1.7 0.1 20 25 452 457 451 458 0.88 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF274-202 - 621 1.7e-28 97.7 36.4 2 6 0.076 68 4.1 0.3 6 25 466 485 466 486 0.83 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF274-202 - 621 1.7e-28 97.7 36.4 3 6 8.8e-09 7.9e-06 26.1 0.4 2 25 490 513 489 514 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF274-202 - 621 1.7e-28 97.7 36.4 4 6 8.3e-10 7.4e-07 29.3 0.1 1 25 517 541 517 542 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF274-202 - 621 1.7e-28 97.7 36.4 5 6 8.3e-10 7.5e-07 29.3 0.2 3 25 547 569 545 570 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF274-202 - 621 1.7e-28 97.7 36.4 6 6 2.4e-11 2.1e-08 34.2 1.2 1 25 573 597 573 598 0.95 Zinc-finger double domain zf-C2H2_4 PF13894.6 24 ZNF274-202 - 621 7.5e-17 60.6 34.9 1 6 2.3 2.1e+03 0.1 0.0 6 15 452 461 450 471 0.71 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF274-202 - 621 7.5e-17 60.6 34.9 2 6 0.00045 0.4 11.6 2.5 2 23 476 497 475 498 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF274-202 - 621 7.5e-17 60.6 34.9 3 6 3.4e-05 0.03 15.1 0.4 1 23 503 525 503 526 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF274-202 - 621 7.5e-17 60.6 34.9 4 6 7.6e-07 0.00068 20.3 0.3 1 23 531 553 531 554 0.97 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF274-202 - 621 7.5e-17 60.6 34.9 5 6 4.4e-06 0.004 17.9 2.0 1 23 559 581 559 582 0.97 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF274-202 - 621 7.5e-17 60.6 34.9 6 6 2.9e-05 0.026 15.4 0.8 1 23 587 609 587 610 0.95 C2H2-type zinc finger # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF274-202.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF274-202.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF274-202.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF274-202.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF274-202.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:02:58 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- SCAN PF02023.17 90 ZNF274-203 - 548 1.2e-38 130.8 4.0 1 1 3.7e-41 3.1e-38 129.5 4.0 1 89 52 140 52 141 0.97 SCAN domain zf-C2H2 PF00096.26 23 ZNF274-203 - 548 1.4e-29 100.8 39.5 1 6 0.5 4.3e+02 1.7 0.2 5 13 378 386 375 388 0.87 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF274-203 - 548 1.4e-29 100.8 39.5 2 6 2.6e-05 0.022 15.2 3.1 2 23 403 424 402 424 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF274-203 - 548 1.4e-29 100.8 39.5 3 6 3.4e-09 2.9e-06 27.4 0.3 1 23 430 452 430 452 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF274-203 - 548 1.4e-29 100.8 39.5 4 6 2.4e-07 0.00021 21.6 0.4 1 23 458 480 458 480 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF274-203 - 548 1.4e-29 100.8 39.5 5 6 1.8e-10 1.5e-07 31.4 3.0 1 23 486 508 486 508 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF274-203 - 548 1.4e-29 100.8 39.5 6 6 9.8e-09 8.3e-06 26.0 1.3 1 23 514 536 514 536 0.98 Zinc finger, C2H2 type zf-H2C2_2 PF13465.6 26 ZNF274-203 - 548 7.2e-29 98.9 36.4 1 6 5 4.3e+03 -1.5 0.1 20 25 379 384 378 385 0.88 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF274-203 - 548 7.2e-29 98.9 36.4 2 6 0.069 59 4.3 0.3 6 25 393 412 393 413 0.83 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF274-203 - 548 7.2e-29 98.9 36.4 3 6 8e-09 6.8e-06 26.3 0.4 2 25 417 440 416 441 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF274-203 - 548 7.2e-29 98.9 36.4 4 6 7.5e-10 6.4e-07 29.5 0.1 1 25 444 468 444 469 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF274-203 - 548 7.2e-29 98.9 36.4 5 6 7.5e-10 6.4e-07 29.5 0.2 3 25 474 496 472 497 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF274-203 - 548 7.2e-29 98.9 36.4 6 6 2.2e-11 1.9e-08 34.4 1.2 1 25 500 524 500 525 0.95 Zinc-finger double domain KRAB PF01352.27 42 ZNF274-203 - 548 6.3e-23 80.2 0.0 1 1 2.1e-25 1.8e-22 78.7 0.0 1 42 181 222 181 222 0.99 KRAB box zf-C2H2_4 PF13894.6 24 ZNF274-203 - 548 3.2e-17 61.7 34.9 1 6 2.1 1.8e+03 0.3 0.0 6 15 379 388 377 398 0.71 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF274-203 - 548 3.2e-17 61.7 34.9 2 6 0.00041 0.35 11.8 2.5 2 23 403 424 402 425 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF274-203 - 548 3.2e-17 61.7 34.9 3 6 3.1e-05 0.026 15.3 0.4 1 23 430 452 430 453 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF274-203 - 548 3.2e-17 61.7 34.9 4 6 6.8e-07 0.00058 20.5 0.3 1 23 458 480 458 481 0.97 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF274-203 - 548 3.2e-17 61.7 34.9 5 6 4e-06 0.0034 18.1 2.0 1 23 486 508 486 509 0.97 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF274-203 - 548 3.2e-17 61.7 34.9 6 6 2.6e-05 0.022 15.6 0.8 1 23 514 536 514 537 0.95 C2H2-type zinc finger # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF274-203.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF274-203.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF274-203.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF274-203.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF274-203.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:02:59 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF274-204.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF274-204.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF274-204.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF274-204.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF274-204.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:02:59 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF274-205.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF274-205.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF274-205.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF274-205.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF274-205.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:02:59 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-C2H2 PF00096.26 23 ZNF274-206 - 372 1.1e-30 104.3 39.7 1 6 0.44 2.7e+02 2.3 0.2 5 13 202 210 198 212 0.87 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF274-206 - 372 1.1e-30 104.3 39.7 2 6 2.2e-05 0.014 15.8 3.1 2 23 227 248 226 248 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF274-206 - 372 1.1e-30 104.3 39.7 3 6 2.9e-09 1.8e-06 28.1 0.3 1 23 254 276 254 276 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF274-206 - 372 1.1e-30 104.3 39.7 4 6 2.1e-07 0.00013 22.2 0.4 1 23 282 304 282 304 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF274-206 - 372 1.1e-30 104.3 39.7 5 6 1.6e-10 9.6e-08 32.1 3.0 1 23 310 332 310 332 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF274-206 - 372 1.1e-30 104.3 39.7 6 6 8.4e-09 5.2e-06 26.6 1.3 1 23 338 360 338 360 0.98 Zinc finger, C2H2 type zf-H2C2_2 PF13465.6 26 ZNF274-206 - 372 4.6e-30 102.7 36.4 1 6 4.5 2.8e+03 -1.0 0.1 20 25 203 208 202 209 0.88 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF274-206 - 372 4.6e-30 102.7 36.4 2 6 0.06 37 5.0 0.3 6 25 217 236 217 237 0.83 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF274-206 - 372 4.6e-30 102.7 36.4 3 6 6.8e-09 4.2e-06 26.9 0.4 2 25 241 264 240 265 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF274-206 - 372 4.6e-30 102.7 36.4 4 6 6.5e-10 4e-07 30.2 0.1 1 25 268 292 268 293 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF274-206 - 372 4.6e-30 102.7 36.4 5 6 6.5e-10 4e-07 30.2 0.2 3 25 298 320 296 321 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF274-206 - 372 4.6e-30 102.7 36.4 6 6 1.9e-11 1.2e-08 35.0 1.2 1 25 324 348 324 349 0.95 Zinc-finger double domain KRAB PF01352.27 42 ZNF274-206 - 372 4.6e-23 80.6 0.0 1 1 1.8e-25 1.1e-22 79.4 0.0 1 42 5 46 5 46 0.99 KRAB box zf-C2H2_4 PF13894.6 24 ZNF274-206 - 372 2.7e-18 65.1 35.1 1 6 1.7 1.1e+03 1.0 0.1 6 15 203 212 201 223 0.71 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF274-206 - 372 2.7e-18 65.1 35.1 2 6 0.00035 0.22 12.5 2.5 2 23 227 248 226 249 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF274-206 - 372 2.7e-18 65.1 35.1 3 6 2.6e-05 0.016 16.0 0.4 1 23 254 276 254 277 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF274-206 - 372 2.7e-18 65.1 35.1 4 6 5.9e-07 0.00036 21.1 0.3 1 23 282 304 282 305 0.97 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF274-206 - 372 2.7e-18 65.1 35.1 5 6 3.4e-06 0.0021 18.7 2.0 1 23 310 332 310 333 0.97 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF274-206 - 372 2.7e-18 65.1 35.1 6 6 2.2e-05 0.014 16.2 0.8 1 23 338 360 338 361 0.95 C2H2-type zinc finger zf-C2H2_jaz PF12171.8 27 ZNF274-206 - 372 3.6e-07 30.3 19.3 1 6 4.4 2.7e+03 -1.2 0.1 7 13 203 209 203 211 0.86 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF274-206 - 372 3.6e-07 30.3 19.3 2 6 0.0076 4.7 7.6 0.1 4 22 228 246 227 246 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF274-206 - 372 3.6e-07 30.3 19.3 3 6 0.0079 4.9 7.6 0.0 2 22 254 274 253 274 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF274-206 - 372 3.6e-07 30.3 19.3 4 6 4e-06 0.0025 18.1 0.1 2 24 282 304 281 304 0.95 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF274-206 - 372 3.6e-07 30.3 19.3 5 6 0.021 13 6.2 0.5 2 24 310 332 309 332 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF274-206 - 372 3.6e-07 30.3 19.3 6 6 2.5 1.5e+03 -0.4 0.5 4 24 340 360 337 361 0.79 Zinc-finger double-stranded RNA-binding Zn-ribbon_8 PF09723.10 40 ZNF274-206 - 372 5.4e-07 29.6 19.1 1 5 0.0011 0.68 10.1 3.3 7 34 227 261 225 266 0.88 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF274-206 - 372 5.4e-07 29.6 19.1 2 5 0.0086 5.3 7.2 0.2 6 16 254 264 253 275 0.80 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF274-206 - 372 5.4e-07 29.6 19.1 3 5 0.0014 0.89 9.7 0.2 6 22 282 298 281 304 0.84 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF274-206 - 372 5.4e-07 29.6 19.1 4 5 2.8e-05 0.017 15.2 3.2 6 36 310 347 309 350 0.88 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF274-206 - 372 5.4e-07 29.6 19.1 5 5 0.0078 4.8 7.4 0.2 6 17 338 349 337 360 0.84 Zinc ribbon domain # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF274-206.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF274-206.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF274-206.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF274-206.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF274-206.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:03:00 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF274-207.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF274-207.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF274-207.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF274-207.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF274-207.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:03:00 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF274-208.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF274-208.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF274-208.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF274-208.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF274-208.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:03:01 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF274-209.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF274-209.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF274-209.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF274-209.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF274-209.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:03:01 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- KRAB PF01352.27 42 ZNF274-210 - 653 2e-48 161.8 0.4 1 2 4.7e-26 3.7e-23 80.9 0.1 1 42 13 54 13 54 0.99 KRAB box KRAB PF01352.27 42 ZNF274-210 - 653 2e-48 161.8 0.4 2 2 2.9e-25 2.3e-22 78.4 0.0 1 42 286 327 286 327 0.99 KRAB box SCAN PF02023.17 90 ZNF274-210 - 653 1.5e-38 130.4 4.0 1 1 5.2e-41 4.1e-38 129.1 4.0 1 89 157 245 157 246 0.97 SCAN domain zf-C2H2 PF00096.26 23 ZNF274-210 - 653 4.8e-29 99.2 39.5 1 6 0.66 5.2e+02 1.4 0.2 5 13 483 491 480 493 0.87 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF274-210 - 653 4.8e-29 99.2 39.5 2 6 3.4e-05 0.027 14.9 3.1 2 23 508 529 507 529 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF274-210 - 653 4.8e-29 99.2 39.5 3 6 4.5e-09 3.5e-06 27.1 0.3 1 23 535 557 535 557 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF274-210 - 653 4.8e-29 99.2 39.5 4 6 3.3e-07 0.00026 21.3 0.4 1 23 563 585 563 585 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF274-210 - 653 4.8e-29 99.2 39.5 5 6 2.4e-10 1.9e-07 31.1 3.0 1 23 591 613 591 613 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF274-210 - 653 4.8e-29 99.2 39.5 6 6 1.3e-08 1e-05 25.7 1.3 1 23 619 641 619 641 0.98 Zinc finger, C2H2 type zf-H2C2_2 PF13465.6 26 ZNF274-210 - 653 2.5e-28 97.2 36.4 1 6 6.6 5.2e+03 -1.8 0.1 20 25 484 489 483 490 0.88 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF274-210 - 653 2.5e-28 97.2 36.4 2 6 0.093 72 4.1 0.3 6 25 498 517 498 518 0.83 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF274-210 - 653 2.5e-28 97.2 36.4 3 6 1.1e-08 8.3e-06 26.0 0.4 2 25 522 545 521 546 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF274-210 - 653 2.5e-28 97.2 36.4 4 6 1e-09 7.9e-07 29.2 0.1 1 25 549 573 549 574 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF274-210 - 653 2.5e-28 97.2 36.4 5 6 1e-09 7.9e-07 29.2 0.2 3 25 579 601 577 602 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF274-210 - 653 2.5e-28 97.2 36.4 6 6 2.9e-11 2.3e-08 34.1 1.2 1 25 605 629 605 630 0.95 Zinc-finger double domain zf-C2H2_4 PF13894.6 24 ZNF274-210 - 653 1.1e-16 60.1 34.9 1 6 2.8 2.2e+03 0.0 0.0 6 15 484 493 482 503 0.71 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF274-210 - 653 1.1e-16 60.1 34.9 2 6 0.00055 0.43 11.6 2.5 2 23 508 529 507 530 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF274-210 - 653 1.1e-16 60.1 34.9 3 6 4.1e-05 0.032 15.1 0.4 1 23 535 557 535 558 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF274-210 - 653 1.1e-16 60.1 34.9 4 6 9.2e-07 0.00072 20.2 0.3 1 23 563 585 563 586 0.97 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF274-210 - 653 1.1e-16 60.1 34.9 5 6 5.4e-06 0.0042 17.8 2.0 1 23 591 613 591 614 0.97 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF274-210 - 653 1.1e-16 60.1 34.9 6 6 3.5e-05 0.027 15.3 0.8 1 23 619 641 619 642 0.95 C2H2-type zinc finger # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF274-210.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF274-210.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF274-210.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF274-210.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF274-210.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:03:01 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- SCAN PF02023.17 90 ZNF274-211 - 304 4.7e-39 132.1 4.0 1 1 1.3e-42 1.1e-38 130.9 4.0 1 89 157 245 157 246 0.98 SCAN domain KRAB PF01352.27 42 ZNF274-211 - 304 5.2e-24 83.6 0.2 1 2 1.5e-27 1.3e-23 82.3 0.1 1 42 13 54 13 54 0.99 KRAB box KRAB PF01352.27 42 ZNF274-211 - 304 5.2e-24 83.6 0.2 2 2 0.53 4.7e+03 -2.7 0.0 33 41 227 235 226 235 0.86 KRAB box # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF274-211.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF274-211.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF274-211.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF274-211.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF274-211.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:03:02 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- KRAB PF01352.27 42 ZNF274-212 - 653 2e-48 161.8 0.4 1 2 4.7e-26 3.7e-23 80.9 0.1 1 42 13 54 13 54 0.99 KRAB box KRAB PF01352.27 42 ZNF274-212 - 653 2e-48 161.8 0.4 2 2 2.9e-25 2.3e-22 78.4 0.0 1 42 286 327 286 327 0.99 KRAB box SCAN PF02023.17 90 ZNF274-212 - 653 1.5e-38 130.4 4.0 1 1 5.2e-41 4.1e-38 129.1 4.0 1 89 157 245 157 246 0.97 SCAN domain zf-C2H2 PF00096.26 23 ZNF274-212 - 653 4.8e-29 99.2 39.5 1 6 0.66 5.2e+02 1.4 0.2 5 13 483 491 480 493 0.87 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF274-212 - 653 4.8e-29 99.2 39.5 2 6 3.4e-05 0.027 14.9 3.1 2 23 508 529 507 529 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF274-212 - 653 4.8e-29 99.2 39.5 3 6 4.5e-09 3.5e-06 27.1 0.3 1 23 535 557 535 557 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF274-212 - 653 4.8e-29 99.2 39.5 4 6 3.3e-07 0.00026 21.3 0.4 1 23 563 585 563 585 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF274-212 - 653 4.8e-29 99.2 39.5 5 6 2.4e-10 1.9e-07 31.1 3.0 1 23 591 613 591 613 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF274-212 - 653 4.8e-29 99.2 39.5 6 6 1.3e-08 1e-05 25.7 1.3 1 23 619 641 619 641 0.98 Zinc finger, C2H2 type zf-H2C2_2 PF13465.6 26 ZNF274-212 - 653 2.5e-28 97.2 36.4 1 6 6.6 5.2e+03 -1.8 0.1 20 25 484 489 483 490 0.88 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF274-212 - 653 2.5e-28 97.2 36.4 2 6 0.093 72 4.1 0.3 6 25 498 517 498 518 0.83 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF274-212 - 653 2.5e-28 97.2 36.4 3 6 1.1e-08 8.3e-06 26.0 0.4 2 25 522 545 521 546 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF274-212 - 653 2.5e-28 97.2 36.4 4 6 1e-09 7.9e-07 29.2 0.1 1 25 549 573 549 574 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF274-212 - 653 2.5e-28 97.2 36.4 5 6 1e-09 7.9e-07 29.2 0.2 3 25 579 601 577 602 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF274-212 - 653 2.5e-28 97.2 36.4 6 6 2.9e-11 2.3e-08 34.1 1.2 1 25 605 629 605 630 0.95 Zinc-finger double domain zf-C2H2_4 PF13894.6 24 ZNF274-212 - 653 1.1e-16 60.1 34.9 1 6 2.8 2.2e+03 0.0 0.0 6 15 484 493 482 503 0.71 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF274-212 - 653 1.1e-16 60.1 34.9 2 6 0.00055 0.43 11.6 2.5 2 23 508 529 507 530 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF274-212 - 653 1.1e-16 60.1 34.9 3 6 4.1e-05 0.032 15.1 0.4 1 23 535 557 535 558 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF274-212 - 653 1.1e-16 60.1 34.9 4 6 9.2e-07 0.00072 20.2 0.3 1 23 563 585 563 586 0.97 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF274-212 - 653 1.1e-16 60.1 34.9 5 6 5.4e-06 0.0042 17.8 2.0 1 23 591 613 591 614 0.97 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF274-212 - 653 1.1e-16 60.1 34.9 6 6 3.5e-05 0.027 15.3 0.8 1 23 619 641 619 642 0.95 C2H2-type zinc finger # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF274-212.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF274-212.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF274-212.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF274-212.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF274-212.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:03:02 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- SCAN PF02023.17 90 ZNF274-213 - 199 2.1e-39 133.2 4.0 1 1 2.6e-43 4.6e-39 132.1 4.0 1 89 52 140 52 141 0.98 SCAN domain # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF274-213.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF274-213.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF274-213.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF274-213.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF274-213.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:03:02 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- SCAN PF02023.17 90 ZNF274-214 - 304 4.7e-39 132.1 4.0 1 1 1.3e-42 1.1e-38 130.9 4.0 1 89 157 245 157 246 0.98 SCAN domain KRAB PF01352.27 42 ZNF274-214 - 304 5.2e-24 83.6 0.2 1 2 1.5e-27 1.3e-23 82.3 0.1 1 42 13 54 13 54 0.99 KRAB box KRAB PF01352.27 42 ZNF274-214 - 304 5.2e-24 83.6 0.2 2 2 0.53 4.7e+03 -2.7 0.0 33 41 227 235 226 235 0.86 KRAB box # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF274-214.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF274-214.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF274-214.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF274-214.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF274-214.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:03:03 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-C2H2_4 PF13894.6 24 ZNF276-201 - 539 3.5e-13 49.2 47.1 1 7 0.072 76 4.6 0.5 3 15 4 15 3 18 0.77 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF276-201 - 539 3.5e-13 49.2 47.1 2 7 0.26 2.7e+02 2.8 2.6 1 17 59 75 59 77 0.87 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF276-201 - 539 3.5e-13 49.2 47.1 3 7 2.5e-05 0.026 15.3 0.2 1 24 359 384 359 384 0.98 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF276-201 - 539 3.5e-13 49.2 47.1 4 7 0.0011 1.1 10.2 0.4 2 24 391 415 390 415 0.87 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF276-201 - 539 3.5e-13 49.2 47.1 5 7 4.9e-06 0.0052 17.5 1.5 1 23 421 443 421 444 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF276-201 - 539 3.5e-13 49.2 47.1 6 7 0.0017 1.8 9.6 2.6 2 23 450 471 449 472 0.76 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF276-201 - 539 3.5e-13 49.2 47.1 7 7 3.6e-06 0.0038 17.9 0.7 1 24 479 502 479 502 0.95 C2H2-type zinc finger zf-C2H2 PF00096.26 23 ZNF276-201 - 539 1.3e-12 47.5 48.3 1 7 1.6 1.7e+03 -0.2 0.5 3 14 4 15 3 17 0.87 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF276-201 - 539 1.3e-12 47.5 48.3 2 7 0.51 5.3e+02 1.4 2.7 1 17 59 75 59 76 0.90 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF276-201 - 539 1.3e-12 47.5 48.3 3 7 0.00046 0.49 11.0 0.3 1 23 359 383 359 384 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF276-201 - 539 1.3e-12 47.5 48.3 4 7 0.0045 4.7 7.8 0.4 3 23 392 415 391 415 0.93 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF276-201 - 539 1.3e-12 47.5 48.3 5 7 1.2e-07 0.00012 22.3 1.9 1 23 421 443 421 443 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF276-201 - 539 1.3e-12 47.5 48.3 6 7 8.3e-05 0.087 13.3 2.5 2 23 450 471 449 471 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF276-201 - 539 1.3e-12 47.5 48.3 7 7 3.1e-07 0.00032 21.0 0.8 1 23 479 502 479 502 0.96 Zinc finger, C2H2 type zf-AD PF07776.15 76 ZNF276-201 - 539 7e-11 42.2 0.6 1 3 6.6e-14 7e-11 42.2 0.6 1 68 3 80 3 85 0.90 Zinc-finger associated domain (zf-AD) zf-AD PF07776.15 76 ZNF276-201 - 539 7e-11 42.2 0.6 2 3 0.14 1.5e+02 2.7 0.0 42 58 416 432 402 444 0.82 Zinc-finger associated domain (zf-AD) zf-AD PF07776.15 76 ZNF276-201 - 539 7e-11 42.2 0.6 3 3 1.1 1.1e+03 -0.1 1.4 47 63 479 495 450 508 0.72 Zinc-finger associated domain (zf-AD) zf-H2C2_2 PF13465.6 26 ZNF276-201 - 539 4.4e-07 30.0 49.6 1 8 0.96 1e+03 0.4 0.3 16 25 3 12 3 13 0.86 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF276-201 - 539 4.4e-07 30.0 49.6 2 8 0.12 1.2e+02 3.3 0.6 13 24 57 68 54 70 0.87 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF276-201 - 539 4.4e-07 30.0 49.6 3 8 4.2 4.4e+03 -1.6 2.7 12 19 356 363 334 370 0.79 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF276-201 - 539 4.4e-07 30.0 49.6 4 8 0.016 17 6.0 3.0 3 24 377 401 375 401 0.86 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF276-201 - 539 4.4e-07 30.0 49.6 5 8 4.8e-07 0.0005 20.4 0.1 2 26 407 432 406 432 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF276-201 - 539 4.4e-07 30.0 49.6 6 8 0.00034 0.36 11.4 1.6 2 22 436 456 433 459 0.84 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF276-201 - 539 4.4e-07 30.0 49.6 7 8 2e-06 0.0021 18.4 0.7 1 25 463 489 463 490 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF276-201 - 539 4.4e-07 30.0 49.6 8 8 2.3 2.4e+03 -0.8 0.0 1 10 493 503 493 510 0.81 Zinc-finger double domain # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF276-201.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF276-201.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF276-201.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF276-201.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF276-201.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:03:03 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-C2H2_4 PF13894.6 24 ZNF276-202 - 614 9.8e-13 47.8 47.1 1 7 0.073 88 4.4 0.5 3 15 79 90 78 93 0.77 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF276-202 - 614 9.8e-13 47.8 47.1 2 7 0.26 3.2e+02 2.6 2.6 1 17 134 150 134 152 0.87 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF276-202 - 614 9.8e-13 47.8 47.1 3 7 2.6e-05 0.031 15.1 0.2 1 24 434 459 434 459 0.98 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF276-202 - 614 9.8e-13 47.8 47.1 4 7 0.0011 1.3 10.0 0.4 2 24 466 490 465 490 0.87 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF276-202 - 614 9.8e-13 47.8 47.1 5 7 5.1e-06 0.006 17.3 1.5 1 23 496 518 496 519 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF276-202 - 614 9.8e-13 47.8 47.1 6 7 0.0018 2.1 9.4 2.6 2 23 525 546 524 547 0.76 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF276-202 - 614 9.8e-13 47.8 47.1 7 7 3.8e-06 0.0045 17.7 0.7 1 24 554 577 554 577 0.95 C2H2-type zinc finger zf-C2H2 PF00096.26 23 ZNF276-202 - 614 3.5e-12 46.1 48.3 1 7 1.6 2e+03 -0.4 0.5 3 14 79 90 78 92 0.87 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF276-202 - 614 3.5e-12 46.1 48.3 2 7 0.52 6.2e+02 1.2 2.7 1 17 134 150 134 151 0.90 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF276-202 - 614 3.5e-12 46.1 48.3 3 7 0.00048 0.57 10.7 0.3 1 23 434 458 434 459 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF276-202 - 614 3.5e-12 46.1 48.3 4 7 0.0046 5.5 7.6 0.4 3 23 467 490 466 490 0.93 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF276-202 - 614 3.5e-12 46.1 48.3 5 7 1.2e-07 0.00014 22.1 1.9 1 23 496 518 496 518 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF276-202 - 614 3.5e-12 46.1 48.3 6 7 8.5e-05 0.1 13.1 2.5 2 23 525 546 524 546 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF276-202 - 614 3.5e-12 46.1 48.3 7 7 3.1e-07 0.00038 20.8 0.8 1 23 554 577 554 577 0.96 Zinc finger, C2H2 type zf-AD PF07776.15 76 ZNF276-202 - 614 8.4e-11 42.0 0.6 1 3 7e-14 8.4e-11 42.0 0.6 1 68 78 155 78 160 0.90 Zinc-finger associated domain (zf-AD) zf-AD PF07776.15 76 ZNF276-202 - 614 8.4e-11 42.0 0.6 2 3 0.14 1.7e+02 2.5 0.0 42 58 491 507 477 519 0.82 Zinc-finger associated domain (zf-AD) zf-AD PF07776.15 76 ZNF276-202 - 614 8.4e-11 42.0 0.6 3 3 1.1 1.3e+03 -0.3 1.4 47 63 554 570 525 583 0.72 Zinc-finger associated domain (zf-AD) zf-H2C2_2 PF13465.6 26 ZNF276-202 - 614 7.7e-07 29.3 3.5 1 8 0.97 1.2e+03 0.2 0.3 16 25 78 87 78 88 0.86 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF276-202 - 614 7.7e-07 29.3 3.5 2 8 0.12 1.4e+02 3.1 0.6 13 24 132 143 129 145 0.87 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF276-202 - 614 7.7e-07 29.3 3.5 3 8 4.5 5.3e+03 -1.8 2.8 12 19 431 438 409 445 0.79 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF276-202 - 614 7.7e-07 29.3 3.5 4 8 0.017 20 5.8 3.0 3 24 452 476 450 476 0.86 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF276-202 - 614 7.7e-07 29.3 3.5 5 8 4.9e-07 0.00059 20.1 0.1 2 26 482 507 481 507 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF276-202 - 614 7.7e-07 29.3 3.5 6 8 0.00035 0.42 11.1 1.6 2 22 511 531 508 534 0.84 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF276-202 - 614 7.7e-07 29.3 3.5 7 8 2e-06 0.0024 18.2 0.7 1 25 538 564 538 565 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF276-202 - 614 7.7e-07 29.3 3.5 8 8 2.5 3e+03 -1.0 0.0 1 10 568 578 568 584 0.82 Zinc-finger double domain # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF276-202.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF276-202.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF276-202.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF276-202.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF276-202.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:03:04 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-C2H2 PF00096.26 23 ZNF276-203 - 452 4.9e-16 58.2 31.1 1 5 0.00037 0.39 11.3 0.3 1 23 272 296 272 297 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF276-203 - 452 4.9e-16 58.2 31.1 2 5 0.0036 3.8 8.1 0.4 3 23 305 328 304 328 0.93 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF276-203 - 452 4.9e-16 58.2 31.1 3 5 9.3e-08 9.8e-05 22.6 1.9 1 23 334 356 334 356 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF276-203 - 452 4.9e-16 58.2 31.1 4 5 6.7e-05 0.071 13.6 2.5 2 23 363 384 362 384 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF276-203 - 452 4.9e-16 58.2 31.1 5 5 2.5e-07 0.00026 21.3 0.8 1 23 392 415 392 415 0.96 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZNF276-203 - 452 8.8e-15 54.1 30.1 1 5 2e-05 0.021 15.6 0.2 1 24 272 297 272 297 0.98 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF276-203 - 452 8.8e-15 54.1 30.1 2 5 0.00088 0.92 10.5 0.4 2 24 304 328 303 328 0.87 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF276-203 - 452 8.8e-15 54.1 30.1 3 5 4e-06 0.0042 17.8 1.5 1 23 334 356 334 357 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF276-203 - 452 8.8e-15 54.1 30.1 4 5 0.0014 1.5 9.9 2.6 2 23 363 384 362 385 0.76 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF276-203 - 452 8.8e-15 54.1 30.1 5 5 2.9e-06 0.0031 18.2 0.7 1 24 392 415 392 415 0.95 C2H2-type zinc finger zf-H2C2_2 PF13465.6 26 ZNF276-203 - 452 4.6e-09 36.3 36.9 1 6 3.8 4e+03 -1.4 2.9 12 19 269 276 247 283 0.78 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF276-203 - 452 4.6e-09 36.3 36.9 2 6 0.013 14 6.3 3.0 3 24 290 314 288 314 0.86 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF276-203 - 452 4.6e-09 36.3 36.9 3 6 3.9e-07 0.00041 20.7 0.1 2 26 320 345 319 345 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF276-203 - 452 4.6e-09 36.3 36.9 4 6 0.00027 0.29 11.6 1.6 2 22 349 369 346 372 0.84 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF276-203 - 452 4.6e-09 36.3 36.9 5 6 1.6e-06 0.0017 18.7 0.7 1 25 376 402 376 403 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF276-203 - 452 4.6e-09 36.3 36.9 6 6 1.9 2e+03 -0.5 0.0 1 10 406 416 406 423 0.81 Zinc-finger double domain # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF276-203.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF276-203.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF276-203.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF276-203.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF276-203.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:03:04 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-C2H2_4 PF13894.6 24 ZNF276-204 - 400 3.9e-15 55.2 30.1 1 5 1.9e-05 0.018 15.8 0.2 1 24 220 245 220 245 0.98 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF276-204 - 400 3.9e-15 55.2 30.1 2 5 0.00084 0.79 10.7 0.4 2 24 252 276 251 276 0.87 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF276-204 - 400 3.9e-15 55.2 30.1 3 5 3.8e-06 0.0036 18.0 1.5 1 23 282 304 282 305 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF276-204 - 400 3.9e-15 55.2 30.1 4 5 0.0013 1.3 10.1 2.6 2 23 311 332 310 333 0.76 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF276-204 - 400 3.9e-15 55.2 30.1 5 5 2.8e-06 0.0027 18.4 0.7 1 24 340 363 340 363 0.95 C2H2-type zinc finger zf-C2H2 PF00096.26 23 ZNF276-204 - 400 5.9e-15 54.8 36.5 1 6 7.2 6.8e+03 -2.1 0.2 3 11 10 22 9 25 0.73 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF276-204 - 400 5.9e-15 54.8 36.5 2 6 0.00036 0.34 11.5 0.3 1 23 220 244 220 245 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF276-204 - 400 5.9e-15 54.8 36.5 3 6 0.0035 3.3 8.3 0.4 3 23 253 276 252 276 0.93 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF276-204 - 400 5.9e-15 54.8 36.5 4 6 9e-08 8.5e-05 22.8 1.9 1 23 282 304 282 304 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF276-204 - 400 5.9e-15 54.8 36.5 5 6 6.4e-05 0.061 13.8 2.5 2 23 311 332 310 332 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF276-204 - 400 5.9e-15 54.8 36.5 6 6 2.4e-07 0.00022 21.5 0.8 1 23 340 363 340 363 0.96 Zinc finger, C2H2 type zf-H2C2_2 PF13465.6 26 ZNF276-204 - 400 1.7e-09 37.6 37.0 1 6 4 3.7e+03 -1.4 3.0 12 19 217 224 195 231 0.78 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF276-204 - 400 1.7e-09 37.6 37.0 2 6 0.013 12 6.6 3.0 3 24 238 262 236 262 0.86 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF276-204 - 400 1.7e-09 37.6 37.0 3 6 3.7e-07 0.00035 20.9 0.1 2 26 268 293 267 293 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF276-204 - 400 1.7e-09 37.6 37.0 4 6 0.00026 0.25 11.8 1.6 2 22 297 317 294 320 0.84 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF276-204 - 400 1.7e-09 37.6 37.0 5 6 1.5e-06 0.0014 18.9 0.7 1 25 324 350 324 351 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF276-204 - 400 1.7e-09 37.6 37.0 6 6 1.8 1.7e+03 -0.3 0.0 1 10 354 364 354 371 0.81 Zinc-finger double domain # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF276-204.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF276-204.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF276-204.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF276-204.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF276-204.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:03:04 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF276-205.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF276-205.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF276-205.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF276-205.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF276-205.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:03:05 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-C2H2 PF00096.26 23 ZNF276-206 - 373 1.7e-16 59.6 31.1 1 5 0.00036 0.31 11.6 0.3 1 23 193 217 193 218 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF276-206 - 373 1.7e-16 59.6 31.1 2 5 0.0035 3 8.5 0.4 3 23 226 249 225 249 0.93 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF276-206 - 373 1.7e-16 59.6 31.1 3 5 9.1e-08 7.8e-05 22.9 1.9 1 23 255 277 255 277 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF276-206 - 373 1.7e-16 59.6 31.1 4 5 6.5e-05 0.056 13.9 2.5 2 23 284 305 283 305 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF276-206 - 373 1.7e-16 59.6 31.1 5 5 2.4e-07 0.00021 21.6 0.8 1 23 313 336 313 336 0.96 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZNF276-206 - 373 3.2e-15 55.5 30.1 1 5 1.9e-05 0.016 16.0 0.2 1 24 193 218 193 218 0.98 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF276-206 - 373 3.2e-15 55.5 30.1 2 5 0.00085 0.72 10.8 0.4 2 24 225 249 224 249 0.87 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF276-206 - 373 3.2e-15 55.5 30.1 3 5 3.8e-06 0.0033 18.1 1.5 1 23 255 277 255 278 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF276-206 - 373 3.2e-15 55.5 30.1 4 5 0.0014 1.2 10.2 2.6 2 23 284 305 283 306 0.76 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF276-206 - 373 3.2e-15 55.5 30.1 5 5 2.9e-06 0.0024 18.5 0.7 1 24 313 336 313 336 0.95 C2H2-type zinc finger zf-H2C2_2 PF13465.6 26 ZNF276-206 - 373 1.5e-09 37.8 37.1 1 6 4.3 3.6e+03 -1.3 3.1 12 19 190 197 168 204 0.78 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF276-206 - 373 1.5e-09 37.8 37.1 2 6 0.013 11 6.7 3.0 3 24 211 235 209 235 0.86 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF276-206 - 373 1.5e-09 37.8 37.1 3 6 3.7e-07 0.00032 21.0 0.1 2 26 241 266 240 266 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF276-206 - 373 1.5e-09 37.8 37.1 4 6 0.00027 0.23 12.0 1.6 2 22 270 290 267 293 0.84 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF276-206 - 373 1.5e-09 37.8 37.1 5 6 1.5e-06 0.0013 19.0 0.7 1 25 297 323 297 324 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF276-206 - 373 1.5e-09 37.8 37.1 6 6 1.9 1.6e+03 -0.2 0.0 1 10 327 337 327 344 0.81 Zinc-finger double domain # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF276-206.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF276-206.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF276-206.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF276-206.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF276-206.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:03:05 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-C2H2 PF00096.26 23 ZNF276-207 - 194 2.5e-18 65.4 31.1 1 5 0.00023 0.13 12.8 0.3 1 23 14 38 14 39 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF276-207 - 194 2.5e-18 65.4 31.1 2 5 0.0022 1.3 9.7 0.4 3 23 47 70 46 70 0.93 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF276-207 - 194 2.5e-18 65.4 31.1 3 5 5.8e-08 3.3e-05 24.1 1.9 1 23 76 98 76 98 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF276-207 - 194 2.5e-18 65.4 31.1 4 5 4.2e-05 0.024 15.1 2.5 2 23 105 126 104 126 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF276-207 - 194 2.5e-18 65.4 31.1 5 5 1.5e-07 8.6e-05 22.8 0.8 1 23 134 157 134 157 0.96 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZNF276-207 - 194 4.5e-17 61.3 30.2 1 5 1.2e-05 0.0067 17.2 0.2 1 24 14 39 14 39 0.98 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF276-207 - 194 4.5e-17 61.3 30.2 2 5 0.00053 0.3 12.0 0.4 2 24 46 70 45 70 0.87 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF276-207 - 194 4.5e-17 61.3 30.2 3 5 2.4e-06 0.0014 19.3 1.5 1 23 76 98 76 99 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF276-207 - 194 4.5e-17 61.3 30.2 4 5 0.00085 0.48 11.4 2.6 2 23 105 126 104 127 0.76 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF276-207 - 194 4.5e-17 61.3 30.2 5 5 1.8e-06 0.001 19.7 0.7 1 24 134 157 134 157 0.96 C2H2-type zinc finger zf-H2C2_2 PF13465.6 26 ZNF276-207 - 194 8.7e-13 48.1 33.2 1 6 0.48 2.7e+02 2.3 0.7 12 19 11 18 4 25 0.75 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF276-207 - 194 8.7e-13 48.1 33.2 2 6 0.0079 4.4 7.9 3.0 3 24 32 56 30 56 0.86 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF276-207 - 194 8.7e-13 48.1 33.2 3 6 2.3e-07 0.00013 22.2 0.1 2 26 62 87 61 87 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF276-207 - 194 8.7e-13 48.1 33.2 4 6 0.00017 0.097 13.1 1.6 2 22 91 111 88 114 0.84 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF276-207 - 194 8.7e-13 48.1 33.2 5 6 9.6e-07 0.00054 20.3 0.7 1 25 118 144 118 145 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF276-207 - 194 8.7e-13 48.1 33.2 6 6 1.3 7.1e+02 0.9 0.0 1 10 148 158 148 166 0.81 Zinc-finger double domain # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF276-207.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF276-207.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF276-207.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF276-207.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF276-207.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:03:06 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-AD PF07776.15 76 ZNF276-208 - 433 3.1e-12 46.5 2.4 1 2 3.9e-14 5e-11 42.7 0.6 1 68 3 80 3 85 0.90 Zinc-finger associated domain (zf-AD) zf-AD PF07776.15 76 ZNF276-208 - 433 3.1e-12 46.5 2.4 2 2 0.091 1.2e+02 3.1 0.0 42 58 399 415 385 426 0.82 Zinc-finger associated domain (zf-AD) zf-C2H2_4 PF13894.6 24 ZNF276-208 - 433 1.1e-08 35.2 29.4 1 5 0.046 59 4.9 0.5 3 15 4 15 3 18 0.77 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF276-208 - 433 1.1e-08 35.2 29.4 2 5 0.16 2.1e+02 3.2 2.6 1 17 59 75 59 77 0.87 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF276-208 - 433 1.1e-08 35.2 29.4 3 5 1.6e-05 0.02 15.7 0.2 1 24 342 367 342 367 0.98 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF276-208 - 433 1.1e-08 35.2 29.4 4 5 0.00068 0.88 10.6 0.4 2 24 374 398 373 398 0.87 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF276-208 - 433 1.1e-08 35.2 29.4 5 5 3.1e-06 0.004 17.9 1.5 1 23 404 426 404 427 0.96 C2H2-type zinc finger # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF276-208.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF276-208.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF276-208.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF276-208.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF276-208.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:03:06 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-C2H2_4 PF13894.6 24 ZNF276-209 - 400 3.9e-15 55.2 30.1 1 5 1.9e-05 0.018 15.8 0.2 1 24 220 245 220 245 0.98 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF276-209 - 400 3.9e-15 55.2 30.1 2 5 0.00084 0.79 10.7 0.4 2 24 252 276 251 276 0.87 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF276-209 - 400 3.9e-15 55.2 30.1 3 5 3.8e-06 0.0036 18.0 1.5 1 23 282 304 282 305 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF276-209 - 400 3.9e-15 55.2 30.1 4 5 0.0013 1.3 10.1 2.6 2 23 311 332 310 333 0.76 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF276-209 - 400 3.9e-15 55.2 30.1 5 5 2.8e-06 0.0027 18.4 0.7 1 24 340 363 340 363 0.95 C2H2-type zinc finger zf-C2H2 PF00096.26 23 ZNF276-209 - 400 5.9e-15 54.8 36.5 1 6 7.2 6.8e+03 -2.1 0.2 3 11 10 22 9 25 0.73 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF276-209 - 400 5.9e-15 54.8 36.5 2 6 0.00036 0.34 11.5 0.3 1 23 220 244 220 245 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF276-209 - 400 5.9e-15 54.8 36.5 3 6 0.0035 3.3 8.3 0.4 3 23 253 276 252 276 0.93 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF276-209 - 400 5.9e-15 54.8 36.5 4 6 9e-08 8.5e-05 22.8 1.9 1 23 282 304 282 304 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF276-209 - 400 5.9e-15 54.8 36.5 5 6 6.4e-05 0.061 13.8 2.5 2 23 311 332 310 332 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF276-209 - 400 5.9e-15 54.8 36.5 6 6 2.4e-07 0.00022 21.5 0.8 1 23 340 363 340 363 0.96 Zinc finger, C2H2 type zf-H2C2_2 PF13465.6 26 ZNF276-209 - 400 1.7e-09 37.6 37.0 1 6 4 3.7e+03 -1.4 3.0 12 19 217 224 195 231 0.78 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF276-209 - 400 1.7e-09 37.6 37.0 2 6 0.013 12 6.6 3.0 3 24 238 262 236 262 0.86 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF276-209 - 400 1.7e-09 37.6 37.0 3 6 3.7e-07 0.00035 20.9 0.1 2 26 268 293 267 293 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF276-209 - 400 1.7e-09 37.6 37.0 4 6 0.00026 0.25 11.8 1.6 2 22 297 317 294 320 0.84 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF276-209 - 400 1.7e-09 37.6 37.0 5 6 1.5e-06 0.0014 18.9 0.7 1 25 324 350 324 351 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF276-209 - 400 1.7e-09 37.6 37.0 6 6 1.8 1.7e+03 -0.3 0.0 1 10 354 364 354 371 0.81 Zinc-finger double domain # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF276-209.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF276-209.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF276-209.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF276-209.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF276-209.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:03:06 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF276-210.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF276-210.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF276-210.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF276-210.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF276-210.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:03:07 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF276-211.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF276-211.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF276-211.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF276-211.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF276-211.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:03:07 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-C2H2 PF00096.26 23 ZNF276-212 - 99 4.8e-09 36.2 9.7 1 2 8.2e-06 0.0082 16.6 2.5 2 23 10 31 9 31 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF276-212 - 99 4.8e-09 36.2 9.7 2 2 2.9e-08 2.9e-05 24.3 0.8 1 23 39 62 39 62 0.96 Zinc finger, C2H2 type zf-H2C2_2 PF13465.6 26 ZNF276-212 - 99 5.1e-08 33.0 7.3 1 3 0.00025 0.25 11.8 0.3 9 22 3 16 1 20 0.89 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF276-212 - 99 5.1e-08 33.0 7.3 2 3 1.8e-07 0.00018 21.8 0.7 1 25 23 49 23 50 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF276-212 - 99 5.1e-08 33.0 7.3 3 3 0.26 2.6e+02 2.3 0.0 1 10 53 63 53 73 0.81 Zinc-finger double domain zf-C2H2_4 PF13894.6 24 ZNF276-212 - 99 7.3e-07 29.5 9.7 1 2 0.00016 0.16 12.9 2.6 2 23 10 31 9 32 0.76 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF276-212 - 99 7.3e-07 29.5 9.7 2 2 3.4e-07 0.00034 21.2 0.7 1 24 39 62 39 62 0.96 C2H2-type zinc finger # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF276-212.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF276-212.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF276-212.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF276-212.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF276-212.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:03:07 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- DUF4195 PF13836.6 185 ZNF280A-201 - 542 1.2e-52 178.7 18.3 1 2 6.3e-56 1.2e-52 178.7 18.3 1 185 47 217 47 217 0.97 Domain of unknown function (DUF4195) DUF4195 PF13836.6 185 ZNF280A-201 - 542 1.2e-52 178.7 18.3 2 2 0.3 6e+02 0.4 0.6 70 104 487 521 459 539 0.75 Domain of unknown function (DUF4195) # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF280A-201.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF280A-201.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF280A-201.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF280A-201.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF280A-201.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:03:08 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- DUF4195 PF13836.6 185 ZNF280C-201 - 737 4.2e-72 242.2 24.5 1 3 1.2e-75 4.2e-72 242.2 24.5 1 185 46 227 46 227 1.00 Domain of unknown function (DUF4195) DUF4195 PF13836.6 185 ZNF280C-201 - 737 4.2e-72 242.2 24.5 2 3 0.09 3.2e+02 1.3 3.3 35 88 544 596 532 621 0.45 Domain of unknown function (DUF4195) DUF4195 PF13836.6 185 ZNF280C-201 - 737 4.2e-72 242.2 24.5 3 3 1.6 5.8e+03 -2.8 0.1 72 86 713 727 699 734 0.51 Domain of unknown function (DUF4195) # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF280C-201.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF280C-201.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF280C-201.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF280C-201.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF280C-201.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:03:08 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF280C-202.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF280C-202.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF280C-202.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF280C-202.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF280C-202.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:03:08 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- DUF4195 PF13836.6 185 ZNF280D-201 - 979 4e-85 284.6 23.8 1 4 6.7e-89 4e-85 284.6 23.8 1 185 45 229 45 229 1.00 Domain of unknown function (DUF4195) DUF4195 PF13836.6 185 ZNF280D-201 - 979 4e-85 284.6 23.8 2 4 3 1.8e+04 -4.7 12.4 93 172 537 612 517 618 0.47 Domain of unknown function (DUF4195) DUF4195 PF13836.6 185 ZNF280D-201 - 979 4e-85 284.6 23.8 3 4 3 1.8e+04 -5.5 8.5 85 169 714 801 699 823 0.48 Domain of unknown function (DUF4195) DUF4195 PF13836.6 185 ZNF280D-201 - 979 4e-85 284.6 23.8 4 4 0.22 1.3e+03 -0.7 0.5 47 119 864 935 856 949 0.77 Domain of unknown function (DUF4195) # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF280D-201.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF280D-201.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF280D-201.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF280D-201.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF280D-201.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:03:09 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- DUF4195 PF13836.6 185 ZNF280D-202 - 535 8.2e-86 286.8 23.8 1 1 5.2e-89 1.3e-85 286.2 23.8 1 185 45 229 45 229 1.00 Domain of unknown function (DUF4195) # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF280D-202.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF280D-202.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF280D-202.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF280D-202.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF280D-202.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:03:09 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF280D-203.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF280D-203.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF280D-203.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF280D-203.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF280D-203.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:03:10 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- DUF4195 PF13836.6 185 ZNF280D-204 - 158 2.8e-41 141.7 9.4 1 1 1.9e-45 3.4e-41 141.4 9.4 1 99 45 141 45 157 0.89 Domain of unknown function (DUF4195) # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF280D-204.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF280D-204.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF280D-204.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF280D-204.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF280D-204.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:03:10 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF280D-205.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF280D-205.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF280D-205.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF280D-205.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF280D-205.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:03:10 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- DUF4195 PF13836.6 185 ZNF280D-206 - 1143 5.1e-85 284.3 23.8 1 4 8.5e-89 5.1e-85 284.3 23.8 1 185 209 393 209 393 1.00 Domain of unknown function (DUF4195) DUF4195 PF13836.6 185 ZNF280D-206 - 1143 5.1e-85 284.3 23.8 2 4 3 1.8e+04 -5.0 12.4 93 172 701 776 681 782 0.47 Domain of unknown function (DUF4195) DUF4195 PF13836.6 185 ZNF280D-206 - 1143 5.1e-85 284.3 23.8 3 4 3 1.8e+04 -5.3 8.0 85 169 878 965 863 985 0.48 Domain of unknown function (DUF4195) DUF4195 PF13836.6 185 ZNF280D-206 - 1143 5.1e-85 284.3 23.8 4 4 0.25 1.5e+03 -0.9 0.5 47 119 1028 1099 1020 1115 0.77 Domain of unknown function (DUF4195) # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF280D-206.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF280D-206.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF280D-206.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF280D-206.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF280D-206.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:03:11 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF280D-207.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF280D-207.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF280D-207.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF280D-207.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF280D-207.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:03:11 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF280D-208.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF280D-208.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF280D-208.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF280D-208.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF280D-208.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:03:11 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- DUF4195 PF13836.6 185 ZNF280D-209 - 592 1.6e-85 285.9 23.8 1 2 5.5e-89 1.6e-85 285.9 23.8 1 185 45 229 45 229 1.00 Domain of unknown function (DUF4195) DUF4195 PF13836.6 185 ZNF280D-209 - 592 1.6e-85 285.9 23.8 2 2 0.29 8.6e+02 -0.1 1.8 132 156 558 582 516 592 0.56 Domain of unknown function (DUF4195) # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF280D-209.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF280D-209.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF280D-209.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF280D-209.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF280D-209.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:03:12 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF280D-210.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF280D-210.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF280D-210.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF280D-210.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF280D-210.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:03:12 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF280D-211.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF280D-211.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF280D-211.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF280D-211.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF280D-211.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:03:13 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF280D-212.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF280D-212.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF280D-212.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF280D-212.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF280D-212.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:03:13 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- DUF4195 PF13836.6 185 ZNF280D-213 - 111 3.7e-22 79.4 10.3 1 1 1.2e-25 4.4e-22 79.1 10.3 122 185 2 65 1 65 0.98 Domain of unknown function (DUF4195) # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF280D-213.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF280D-213.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF280D-213.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF280D-213.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF280D-213.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:03:13 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZNF281-201 - 895 3.9e-18 65.0 20.0 1 4 0.095 2.1e+02 2.6 0.1 11 25 257 271 255 272 0.87 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF281-201 - 895 3.9e-18 65.0 20.0 2 4 7.4e-10 1.6e-06 28.2 0.2 1 24 275 298 275 300 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF281-201 - 895 3.9e-18 65.0 20.0 3 4 1.1e-06 0.0024 18.2 0.4 2 24 304 326 304 328 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF281-201 - 895 3.9e-18 65.0 20.0 4 4 6.5e-09 1.5e-05 25.2 4.1 2 25 332 355 331 356 0.92 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZNF281-201 - 895 2.5e-11 43.4 33.5 1 4 1.1e-05 0.025 15.0 4.5 1 23 261 283 261 283 0.95 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF281-201 - 895 2.5e-11 43.4 33.5 2 4 1.2e-06 0.0028 18.0 0.8 1 23 289 311 289 311 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF281-201 - 895 2.5e-11 43.4 33.5 3 4 1.4e-05 0.03 14.8 3.6 3 23 319 339 317 339 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF281-201 - 895 2.5e-11 43.4 33.5 4 4 9.8e-05 0.22 12.1 2.3 1 22 345 366 345 366 0.97 Zinc finger, C2H2 type # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF281-201.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF281-201.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF281-201.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF281-201.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF281-201.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:03:13 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZNF281-202 - 859 3.2e-18 65.2 20.0 1 4 0.1 2e+02 2.6 0.1 11 25 221 235 219 236 0.87 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF281-202 - 859 3.2e-18 65.2 20.0 2 4 7.9e-10 1.6e-06 28.3 0.2 1 24 239 262 239 264 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF281-202 - 859 3.2e-18 65.2 20.0 3 4 1.1e-06 0.0023 18.3 0.4 2 24 268 290 268 292 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF281-202 - 859 3.2e-18 65.2 20.0 4 4 7e-09 1.4e-05 25.3 4.1 2 25 296 319 295 320 0.92 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZNF281-202 - 859 2.1e-11 43.6 33.5 1 4 1.2e-05 0.024 15.1 4.5 1 23 225 247 225 247 0.95 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF281-202 - 859 2.1e-11 43.6 33.5 2 4 1.3e-06 0.0027 18.1 0.8 1 23 253 275 253 275 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF281-202 - 859 2.1e-11 43.6 33.5 3 4 1.5e-05 0.029 14.8 3.6 3 23 283 303 281 303 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF281-202 - 859 2.1e-11 43.6 33.5 4 4 0.00011 0.21 12.1 2.3 1 22 309 330 309 330 0.97 Zinc finger, C2H2 type # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF281-202.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF281-202.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF281-202.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF281-202.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF281-202.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:03:14 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZNF281-203 - 895 3.9e-18 65.0 20.0 1 4 0.095 2.1e+02 2.6 0.1 11 25 257 271 255 272 0.87 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF281-203 - 895 3.9e-18 65.0 20.0 2 4 7.4e-10 1.6e-06 28.2 0.2 1 24 275 298 275 300 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF281-203 - 895 3.9e-18 65.0 20.0 3 4 1.1e-06 0.0024 18.2 0.4 2 24 304 326 304 328 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF281-203 - 895 3.9e-18 65.0 20.0 4 4 6.5e-09 1.5e-05 25.2 4.1 2 25 332 355 331 356 0.92 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZNF281-203 - 895 2.5e-11 43.4 33.5 1 4 1.1e-05 0.025 15.0 4.5 1 23 261 283 261 283 0.95 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF281-203 - 895 2.5e-11 43.4 33.5 2 4 1.2e-06 0.0028 18.0 0.8 1 23 289 311 289 311 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF281-203 - 895 2.5e-11 43.4 33.5 3 4 1.4e-05 0.03 14.8 3.6 3 23 319 339 317 339 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF281-203 - 895 2.5e-11 43.4 33.5 4 4 9.8e-05 0.22 12.1 2.3 1 22 345 366 345 366 0.97 Zinc finger, C2H2 type # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF281-203.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF281-203.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF281-203.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF281-203.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF281-203.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:03:14 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF28-201.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF28-201.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF28-201.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF28-201.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF28-201.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:03:15 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF28-202.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF28-202.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF28-202.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF28-202.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF28-202.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:03:15 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZNF28-203 - 665 9.2e-124 398.9 157.9 1 19 0.037 32 5.2 0.1 8 25 155 172 149 173 0.86 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF28-203 - 665 9.2e-124 398.9 157.9 2 19 0.0017 1.4 9.5 0.6 2 25 177 200 177 201 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF28-203 - 665 9.2e-124 398.9 157.9 3 19 5.2e-06 0.0044 17.4 2.8 5 26 208 229 205 229 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF28-203 - 665 9.2e-124 398.9 157.9 4 19 2.1e-08 1.8e-05 24.9 0.4 4 25 235 256 232 257 0.90 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF28-203 - 665 9.2e-124 398.9 157.9 5 19 3.6e-06 0.0031 17.9 3.0 1 25 260 284 258 285 0.79 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF28-203 - 665 9.2e-124 398.9 157.9 6 19 1.8e-10 1.5e-07 31.5 0.7 2 25 289 312 288 313 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF28-203 - 665 9.2e-124 398.9 157.9 7 19 1.4e-11 1.2e-08 35.0 0.9 2 25 317 340 316 341 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF28-203 - 665 9.2e-124 398.9 157.9 8 19 1.1e-12 9.6e-10 38.5 3.1 1 25 344 368 344 369 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF28-203 - 665 9.2e-124 398.9 157.9 9 19 2.8e-10 2.4e-07 30.9 0.4 2 25 373 396 372 397 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF28-203 - 665 9.2e-124 398.9 157.9 10 19 2.2e-08 1.9e-05 24.9 4.7 2 25 401 424 400 425 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF28-203 - 665 9.2e-124 398.9 157.9 11 19 1.8e-12 1.5e-09 37.8 2.8 1 25 428 452 428 453 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF28-203 - 665 9.2e-124 398.9 157.9 12 19 2.9e-10 2.4e-07 30.8 0.4 2 26 457 481 457 481 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF28-203 - 665 9.2e-124 398.9 157.9 13 19 1.5e-06 0.0013 19.1 4.7 5 25 488 508 484 509 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF28-203 - 665 9.2e-124 398.9 157.9 14 19 1.9e-11 1.6e-08 34.6 3.5 2 25 513 536 512 537 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF28-203 - 665 9.2e-124 398.9 157.9 15 19 3.3e-11 2.8e-08 33.8 1.8 1 25 540 564 540 565 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF28-203 - 665 9.2e-124 398.9 157.9 16 19 1.8e-10 1.5e-07 31.5 0.4 5 25 572 592 568 593 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF28-203 - 665 9.2e-124 398.9 157.9 17 19 6.9e-10 5.9e-07 29.6 1.6 1 25 596 620 596 621 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF28-203 - 665 9.2e-124 398.9 157.9 18 19 1.5e-11 1.3e-08 34.9 1.5 1 25 624 648 624 649 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF28-203 - 665 9.2e-124 398.9 157.9 19 19 0.0073 6.2 7.4 0.7 1 14 652 665 652 665 0.96 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZNF28-203 - 665 1.3e-86 280.5 158.5 1 18 0.01 8.7 7.0 0.2 7 23 168 184 168 184 0.95 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF28-203 - 665 1.3e-86 280.5 158.5 2 18 0.13 1.2e+02 3.5 1.0 6 23 192 212 189 212 0.86 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF28-203 - 665 1.3e-86 280.5 158.5 3 18 1.4e-05 0.012 16.0 1.3 1 23 218 240 218 240 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF28-203 - 665 1.3e-86 280.5 158.5 4 18 4e-08 3.4e-05 24.1 0.3 1 20 246 265 246 267 0.95 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF28-203 - 665 1.3e-86 280.5 158.5 5 18 1.8e-05 0.016 15.7 2.2 1 23 274 296 274 296 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF28-203 - 665 1.3e-86 280.5 158.5 6 18 2.2e-09 1.9e-06 28.0 1.1 1 23 302 324 302 324 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF28-203 - 665 1.3e-86 280.5 158.5 7 18 4e-09 3.4e-06 27.2 2.2 1 23 330 352 330 352 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF28-203 - 665 1.3e-86 280.5 158.5 8 18 8.4e-07 0.00072 19.9 0.4 1 23 358 380 358 380 0.95 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF28-203 - 665 1.3e-86 280.5 158.5 9 18 2.8e-09 2.4e-06 27.7 2.2 1 23 386 408 386 408 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF28-203 - 665 1.3e-86 280.5 158.5 10 18 1e-06 0.00089 19.6 5.7 1 23 414 436 414 436 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF28-203 - 665 1.3e-86 280.5 158.5 11 18 5.5e-07 0.00047 20.5 2.7 1 23 442 464 442 464 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF28-203 - 665 1.3e-86 280.5 158.5 12 18 8.9e-06 0.0076 16.7 3.2 1 23 470 492 470 492 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF28-203 - 665 1.3e-86 280.5 158.5 13 18 1.5e-08 1.3e-05 25.4 3.4 1 23 498 520 498 520 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF28-203 - 665 1.3e-86 280.5 158.5 14 18 2.3e-08 1.9e-05 24.8 2.3 1 23 526 548 526 548 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF28-203 - 665 1.3e-86 280.5 158.5 15 18 1e-08 8.6e-06 25.9 1.2 1 23 554 576 554 576 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF28-203 - 665 1.3e-86 280.5 158.5 16 18 1.6e-07 0.00014 22.2 3.3 1 23 582 604 582 604 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF28-203 - 665 1.3e-86 280.5 158.5 17 18 1.3e-09 1.1e-06 28.7 0.8 1 23 610 632 610 632 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF28-203 - 665 1.3e-86 280.5 158.5 18 18 5e-08 4.3e-05 23.7 3.2 1 23 638 660 638 660 0.99 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZNF28-203 - 665 2e-44 146.4 152.5 1 18 0.01 8.6 7.5 0.6 3 23 164 184 162 185 0.80 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF28-203 - 665 2e-44 146.4 152.5 2 18 0.64 5.5e+02 1.9 1.3 6 23 192 212 188 213 0.78 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF28-203 - 665 2e-44 146.4 152.5 3 18 0.0084 7.2 7.7 1.0 1 23 218 240 218 241 0.88 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF28-203 - 665 2e-44 146.4 152.5 4 18 4.6e-05 0.039 14.8 0.4 1 20 246 265 246 267 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF28-203 - 665 2e-44 146.4 152.5 5 18 0.00017 0.14 13.1 1.7 1 23 274 296 274 297 0.89 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF28-203 - 665 2e-44 146.4 152.5 6 18 5.1e-06 0.0043 17.8 0.7 1 23 302 324 302 325 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF28-203 - 665 2e-44 146.4 152.5 7 18 5.7e-06 0.0049 17.6 2.1 1 23 330 352 330 353 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF28-203 - 665 2e-44 146.4 152.5 8 18 0.00035 0.3 12.0 0.4 1 23 358 380 358 381 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF28-203 - 665 2e-44 146.4 152.5 9 18 1.5e-05 0.013 16.3 1.6 1 23 386 408 386 409 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF28-203 - 665 2e-44 146.4 152.5 10 18 1.3e-05 0.011 16.5 4.8 1 23 414 436 414 437 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF28-203 - 665 2e-44 146.4 152.5 11 18 0.00028 0.24 12.4 2.5 1 23 442 464 442 465 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF28-203 - 665 2e-44 146.4 152.5 12 18 0.00013 0.12 13.3 2.9 1 23 470 492 470 493 0.91 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF28-203 - 665 2e-44 146.4 152.5 13 18 9.8e-06 0.0083 16.9 2.7 1 23 498 520 498 521 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF28-203 - 665 2e-44 146.4 152.5 14 18 9.4e-05 0.081 13.8 1.8 1 23 526 548 526 549 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF28-203 - 665 2e-44 146.4 152.5 15 18 3.9e-05 0.033 15.0 0.7 1 23 554 576 554 577 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF28-203 - 665 2e-44 146.4 152.5 16 18 5.2e-05 0.045 14.6 2.6 1 23 582 604 582 605 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF28-203 - 665 2e-44 146.4 152.5 17 18 1.8e-05 0.015 16.0 0.9 1 23 610 632 610 633 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF28-203 - 665 2e-44 146.4 152.5 18 18 6.2e-05 0.053 14.4 2.3 1 23 638 660 638 661 0.92 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF28-203 - 665 2.8e-22 78.2 137.7 1 18 8.2 7e+03 -2.8 0.3 20 24 208 212 205 213 0.62 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF28-203 - 665 2.8e-22 78.2 137.7 2 18 0.0012 1.1 9.4 1.8 2 24 218 240 218 242 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF28-203 - 665 2.8e-22 78.2 137.7 3 18 0.00011 0.091 12.8 0.3 2 21 246 265 246 267 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF28-203 - 665 2.8e-22 78.2 137.7 4 18 0.0046 4 7.6 1.2 2 11 274 283 274 284 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF28-203 - 665 2.8e-22 78.2 137.7 5 18 1.2e-05 0.01 15.8 0.5 2 24 302 324 302 327 0.91 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF28-203 - 665 2.8e-22 78.2 137.7 6 18 0.00082 0.7 10.0 1.8 2 24 330 352 330 355 0.90 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF28-203 - 665 2.8e-22 78.2 137.7 7 18 0.0012 0.99 9.5 0.5 2 13 358 369 358 380 0.87 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF28-203 - 665 2.8e-22 78.2 137.7 8 18 0.00022 0.19 11.8 0.6 2 14 386 398 386 410 0.83 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF28-203 - 665 2.8e-22 78.2 137.7 9 18 0.015 13 5.9 2.7 2 12 414 424 414 436 0.86 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF28-203 - 665 2.8e-22 78.2 137.7 10 18 0.0004 0.34 11.0 1.8 2 20 442 460 442 466 0.79 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF28-203 - 665 2.8e-22 78.2 137.7 11 18 0.0016 1.4 9.0 2.0 2 18 470 486 470 495 0.76 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF28-203 - 665 2.8e-22 78.2 137.7 12 18 0.061 52 4.0 4.8 2 13 498 509 498 521 0.77 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF28-203 - 665 2.8e-22 78.2 137.7 13 18 0.0015 1.3 9.1 0.7 2 12 526 536 526 537 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF28-203 - 665 2.8e-22 78.2 137.7 14 18 5.2 4.5e+03 -2.2 0.1 20 26 540 546 538 547 0.84 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF28-203 - 665 2.8e-22 78.2 137.7 15 18 2.2e-05 0.019 15.0 0.5 2 24 554 576 554 579 0.92 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF28-203 - 665 2.8e-22 78.2 137.7 16 18 0.00043 0.37 10.8 1.3 2 14 582 594 582 606 0.80 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF28-203 - 665 2.8e-22 78.2 137.7 17 18 0.00077 0.66 10.0 2.9 2 16 610 624 610 633 0.77 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF28-203 - 665 2.8e-22 78.2 137.7 18 18 0.00039 0.33 11.0 1.1 2 13 638 649 638 662 0.80 C2H2-type zinc finger zf-C2H2_jaz PF12171.8 27 ZNF28-203 - 665 1.4e-16 60.3 100.7 1 16 0.33 2.8e+02 2.0 0.2 2 13 218 229 217 236 0.83 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF28-203 - 665 1.4e-16 60.3 100.7 2 16 2e-05 0.017 15.4 0.5 2 21 246 265 245 266 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF28-203 - 665 1.4e-16 60.3 100.7 3 16 0.047 40 4.6 2.3 2 11 274 283 273 292 0.87 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF28-203 - 665 1.4e-16 60.3 100.7 4 16 0.011 9.6 6.6 0.0 2 21 302 321 301 322 0.90 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF28-203 - 665 1.4e-16 60.3 100.7 5 16 8.4e-05 0.072 13.4 0.5 2 22 330 350 329 350 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF28-203 - 665 1.4e-16 60.3 100.7 6 16 0.015 12 6.3 1.1 2 12 358 368 357 376 0.83 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF28-203 - 665 1.4e-16 60.3 100.7 7 16 0.012 10 6.5 0.2 2 20 386 404 385 404 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF28-203 - 665 1.4e-16 60.3 100.7 8 16 0.0047 4 7.8 1.6 2 21 414 433 413 434 0.83 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF28-203 - 665 1.4e-16 60.3 100.7 9 16 0.00022 0.19 12.1 0.9 2 21 442 461 441 462 0.89 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF28-203 - 665 1.4e-16 60.3 100.7 10 16 0.069 59 4.1 0.6 2 16 470 484 469 488 0.86 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF28-203 - 665 1.4e-16 60.3 100.7 11 16 0.00016 0.14 12.5 0.4 2 21 498 517 497 518 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF28-203 - 665 1.4e-16 60.3 100.7 12 16 5.3e-05 0.045 14.1 0.5 2 22 526 546 525 546 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF28-203 - 665 1.4e-16 60.3 100.7 13 16 0.15 1.3e+02 3.0 0.1 2 12 554 564 553 574 0.80 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF28-203 - 665 1.4e-16 60.3 100.7 14 16 0.018 15 6.0 0.2 2 20 582 600 581 600 0.89 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF28-203 - 665 1.4e-16 60.3 100.7 15 16 0.012 9.8 6.6 0.8 2 22 610 630 609 630 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF28-203 - 665 1.4e-16 60.3 100.7 16 16 0.025 21 5.5 0.3 2 20 638 656 637 656 0.88 Zinc-finger double-stranded RNA-binding zf-met PF12874.7 25 ZNF28-203 - 665 8.3e-16 57.8 117.1 1 17 4.4 3.8e+03 -1.5 0.1 8 19 169 180 168 181 0.89 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF28-203 - 665 8.3e-16 57.8 117.1 2 17 0.82 7e+02 0.8 0.3 1 19 218 236 218 238 0.86 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF28-203 - 665 8.3e-16 57.8 117.1 3 17 4.8e-05 0.041 14.3 0.9 1 19 246 264 246 265 0.96 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF28-203 - 665 8.3e-16 57.8 117.1 4 17 0.00015 0.13 12.7 1.7 1 19 274 292 274 295 0.94 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF28-203 - 665 8.3e-16 57.8 117.1 5 17 0.013 11 6.5 0.1 1 19 302 320 302 322 0.93 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF28-203 - 665 8.3e-16 57.8 117.1 6 17 9.7e-05 0.083 13.3 0.9 1 21 330 350 330 353 0.92 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF28-203 - 665 8.3e-16 57.8 117.1 7 17 0.0021 1.8 9.1 0.8 1 19 358 376 358 376 0.93 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF28-203 - 665 8.3e-16 57.8 117.1 8 17 0.01 8.5 6.9 0.4 1 19 386 404 386 404 0.95 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF28-203 - 665 8.3e-16 57.8 117.1 9 17 0.00032 0.28 11.7 2.0 1 20 414 433 414 437 0.91 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF28-203 - 665 8.3e-16 57.8 117.1 10 17 0.0012 1.1 9.8 1.7 1 20 442 461 442 464 0.89 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF28-203 - 665 8.3e-16 57.8 117.1 11 17 0.061 52 4.4 3.4 1 19 470 488 470 492 0.94 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF28-203 - 665 8.3e-16 57.8 117.1 12 17 0.00027 0.23 11.9 0.9 1 20 498 517 498 521 0.91 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF28-203 - 665 8.3e-16 57.8 117.1 13 17 3.4e-05 0.029 14.8 0.8 1 21 526 546 526 549 0.93 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF28-203 - 665 8.3e-16 57.8 117.1 14 17 0.24 2.1e+02 2.5 0.1 1 19 554 572 554 574 0.86 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF28-203 - 665 8.3e-16 57.8 117.1 15 17 0.31 2.7e+02 2.2 0.6 1 16 582 597 582 600 0.81 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF28-203 - 665 8.3e-16 57.8 117.1 16 17 0.0011 0.9 10.0 1.5 1 21 610 630 610 633 0.93 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF28-203 - 665 8.3e-16 57.8 117.1 17 17 0.38 3.2e+02 1.9 0.6 1 16 638 653 638 656 0.80 Zinc-finger of C2H2 type Zn-ribbon_8 PF09723.10 40 ZNF28-203 - 665 7.5e-12 45.2 107.1 1 14 0.0049 4.2 7.6 5.7 6 34 218 253 217 258 0.79 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF28-203 - 665 7.5e-12 45.2 107.1 2 14 0.066 56 4.0 7.2 6 34 246 281 245 286 0.85 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF28-203 - 665 7.5e-12 45.2 107.1 3 14 0.2 1.7e+02 2.4 0.7 6 16 274 284 273 293 0.89 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF28-203 - 665 7.5e-12 45.2 107.1 4 14 0.00028 0.23 11.6 0.1 6 21 302 317 301 325 0.86 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF28-203 - 665 7.5e-12 45.2 107.1 5 14 0.016 14 5.9 6.2 6 34 330 365 329 368 0.83 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF28-203 - 665 7.5e-12 45.2 107.1 6 14 0.0013 1.1 9.4 6.3 6 33 386 420 385 421 0.86 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF28-203 - 665 7.5e-12 45.2 107.1 7 14 0.012 10 6.3 7.6 6 35 414 450 413 454 0.86 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF28-203 - 665 7.5e-12 45.2 107.1 8 14 0.0026 2.2 8.5 5.0 6 34 442 477 441 483 0.92 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF28-203 - 665 7.5e-12 45.2 107.1 9 14 0.018 15 5.8 0.3 6 16 470 480 469 490 0.85 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF28-203 - 665 7.5e-12 45.2 107.1 10 14 0.0011 0.93 9.7 6.4 6 38 498 537 497 539 0.87 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF28-203 - 665 7.5e-12 45.2 107.1 11 14 0.0023 2 8.6 0.4 6 18 554 566 552 576 0.85 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF28-203 - 665 7.5e-12 45.2 107.1 12 14 0.00049 0.42 10.8 0.2 6 20 582 596 581 601 0.90 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF28-203 - 665 7.5e-12 45.2 107.1 13 14 1.3e-05 0.011 15.8 4.6 6 36 610 647 609 650 0.89 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF28-203 - 665 7.5e-12 45.2 107.1 14 14 0.00091 0.78 9.9 0.3 6 19 638 651 637 654 0.89 Zinc ribbon domain BolA PF01722.18 76 ZNF28-203 - 665 3.7e-09 36.7 32.5 1 11 0.21 1.8e+02 2.5 0.3 19 50 177 209 135 211 0.59 BolA-like protein BolA PF01722.18 76 ZNF28-203 - 665 3.7e-09 36.7 32.5 2 11 0.69 5.9e+02 0.8 0.0 31 54 246 269 235 272 0.79 BolA-like protein BolA PF01722.18 76 ZNF28-203 - 665 3.7e-09 36.7 32.5 3 11 0.048 41 4.5 0.0 16 53 259 296 253 297 0.78 BolA-like protein BolA PF01722.18 76 ZNF28-203 - 665 3.7e-09 36.7 32.5 4 11 0.047 40 4.6 0.1 25 52 296 323 287 328 0.82 BolA-like protein BolA PF01722.18 76 ZNF28-203 - 665 3.7e-09 36.7 32.5 5 11 0.065 55 4.1 1.3 19 53 320 352 310 354 0.80 BolA-like protein BolA PF01722.18 76 ZNF28-203 - 665 3.7e-09 36.7 32.5 6 11 0.0022 1.9 8.9 0.2 15 53 342 380 337 384 0.87 BolA-like protein BolA PF01722.18 76 ZNF28-203 - 665 3.7e-09 36.7 32.5 7 11 0.0031 2.6 8.4 0.9 15 53 398 436 390 438 0.85 BolA-like protein BolA PF01722.18 76 ZNF28-203 - 665 3.7e-09 36.7 32.5 8 11 0.0035 3 8.2 0.2 16 53 427 464 426 473 0.87 BolA-like protein BolA PF01722.18 76 ZNF28-203 - 665 3.7e-09 36.7 32.5 9 11 0.006 5.1 7.5 0.9 21 53 488 520 479 522 0.85 BolA-like protein BolA PF01722.18 76 ZNF28-203 - 665 3.7e-09 36.7 32.5 10 11 0.00028 0.24 11.7 2.1 15 53 510 548 508 554 0.91 BolA-like protein BolA PF01722.18 76 ZNF28-203 - 665 3.7e-09 36.7 32.5 11 11 0.057 49 4.3 0.4 17 53 596 632 585 659 0.84 BolA-like protein # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF28-203.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF28-203.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF28-203.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF28-203.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF28-203.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:03:16 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZNF28-204 - 718 8.8e-123 395.8 158.7 1 19 0.044 38 5.0 0.2 8 25 208 225 203 226 0.85 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF28-204 - 718 8.8e-123 395.8 158.7 2 19 0.0018 1.6 9.3 0.6 2 25 230 253 230 254 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF28-204 - 718 8.8e-123 395.8 158.7 3 19 5.7e-06 0.0048 17.3 2.8 5 26 261 282 258 282 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF28-204 - 718 8.8e-123 395.8 158.7 4 19 2.3e-08 2e-05 24.8 0.4 4 25 288 309 285 310 0.90 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF28-204 - 718 8.8e-123 395.8 158.7 5 19 3.9e-06 0.0033 17.8 3.0 1 25 313 337 311 338 0.79 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF28-204 - 718 8.8e-123 395.8 158.7 6 19 1.9e-10 1.7e-07 31.4 0.7 2 25 342 365 341 366 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF28-204 - 718 8.8e-123 395.8 158.7 7 19 1.5e-11 1.3e-08 34.8 0.9 2 25 370 393 369 394 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF28-204 - 718 8.8e-123 395.8 158.7 8 19 1.2e-12 1e-09 38.3 3.1 1 25 397 421 397 422 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF28-204 - 718 8.8e-123 395.8 158.7 9 19 3.1e-10 2.6e-07 30.8 0.4 2 25 426 449 425 450 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF28-204 - 718 8.8e-123 395.8 158.7 10 19 2.4e-08 2.1e-05 24.8 4.7 2 25 454 477 453 478 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF28-204 - 718 8.8e-123 395.8 158.7 11 19 2e-12 1.7e-09 37.7 2.8 1 25 481 505 481 506 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF28-204 - 718 8.8e-123 395.8 158.7 12 19 3.1e-10 2.7e-07 30.7 0.4 2 26 510 534 510 534 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF28-204 - 718 8.8e-123 395.8 158.7 13 19 1.6e-06 0.0014 19.0 4.7 5 25 541 561 537 562 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF28-204 - 718 8.8e-123 395.8 158.7 14 19 2.1e-11 1.8e-08 34.4 3.5 2 25 566 589 565 590 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF28-204 - 718 8.8e-123 395.8 158.7 15 19 3.6e-11 3.1e-08 33.7 1.8 1 25 593 617 593 618 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF28-204 - 718 8.8e-123 395.8 158.7 16 19 1.9e-10 1.6e-07 31.4 0.4 5 25 625 645 621 646 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF28-204 - 718 8.8e-123 395.8 158.7 17 19 7.5e-10 6.4e-07 29.5 1.6 1 25 649 673 649 674 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF28-204 - 718 8.8e-123 395.8 158.7 18 19 1.6e-11 1.4e-08 34.8 1.5 1 25 677 701 677 702 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF28-204 - 718 8.8e-123 395.8 158.7 19 19 0.0079 6.7 7.3 0.7 1 14 705 718 705 718 0.96 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZNF28-204 - 718 6e-86 278.4 158.5 1 18 0.011 9.5 6.9 0.2 7 23 221 237 221 237 0.95 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF28-204 - 718 6e-86 278.4 158.5 2 18 0.15 1.3e+02 3.4 1.0 6 23 245 265 242 265 0.86 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF28-204 - 718 6e-86 278.4 158.5 3 18 1.6e-05 0.013 15.9 1.3 1 23 271 293 271 293 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF28-204 - 718 6e-86 278.4 158.5 4 18 4.4e-08 3.7e-05 23.9 0.3 1 20 299 318 299 320 0.95 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF28-204 - 718 6e-86 278.4 158.5 5 18 2e-05 0.017 15.5 2.2 1 23 327 349 327 349 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF28-204 - 718 6e-86 278.4 158.5 6 18 2.5e-09 2.1e-06 27.9 1.1 1 23 355 377 355 377 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF28-204 - 718 6e-86 278.4 158.5 7 18 4.3e-09 3.7e-06 27.1 2.2 1 23 383 405 383 405 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF28-204 - 718 6e-86 278.4 158.5 8 18 9.2e-07 0.00079 19.8 0.4 1 23 411 433 411 433 0.95 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF28-204 - 718 6e-86 278.4 158.5 9 18 3.1e-09 2.6e-06 27.6 2.2 1 23 439 461 439 461 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF28-204 - 718 6e-86 278.4 158.5 10 18 1.1e-06 0.00097 19.5 5.7 1 23 467 489 467 489 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF28-204 - 718 6e-86 278.4 158.5 11 18 6e-07 0.00051 20.3 2.7 1 23 495 517 495 517 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF28-204 - 718 6e-86 278.4 158.5 12 18 9.7e-06 0.0083 16.5 3.2 1 23 523 545 523 545 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF28-204 - 718 6e-86 278.4 158.5 13 18 1.6e-08 1.4e-05 25.3 3.4 1 23 551 573 551 573 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF28-204 - 718 6e-86 278.4 158.5 14 18 2.5e-08 2.1e-05 24.7 2.3 1 23 579 601 579 601 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF28-204 - 718 6e-86 278.4 158.5 15 18 1.1e-08 9.4e-06 25.8 1.2 1 23 607 629 607 629 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF28-204 - 718 6e-86 278.4 158.5 16 18 1.7e-07 0.00015 22.0 3.3 1 23 635 657 635 657 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF28-204 - 718 6e-86 278.4 158.5 17 18 1.5e-09 1.2e-06 28.6 0.8 1 23 663 685 663 685 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF28-204 - 718 6e-86 278.4 158.5 18 18 5.5e-08 4.7e-05 23.6 3.2 1 23 691 713 691 713 0.99 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZNF28-204 - 718 9.4e-44 144.3 152.5 1 18 0.011 9.4 7.4 0.6 3 23 217 237 215 238 0.80 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF28-204 - 718 9.4e-44 144.3 152.5 2 18 0.7 6e+02 1.8 1.3 6 23 245 265 241 266 0.78 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF28-204 - 718 9.4e-44 144.3 152.5 3 18 0.0092 7.8 7.6 1.0 1 23 271 293 271 294 0.88 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF28-204 - 718 9.4e-44 144.3 152.5 4 18 5e-05 0.043 14.7 0.4 1 20 299 318 299 320 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF28-204 - 718 9.4e-44 144.3 152.5 5 18 0.00018 0.15 12.9 1.7 1 23 327 349 327 350 0.89 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF28-204 - 718 9.4e-44 144.3 152.5 6 18 5.6e-06 0.0047 17.6 0.7 1 23 355 377 355 378 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF28-204 - 718 9.4e-44 144.3 152.5 7 18 6.3e-06 0.0054 17.5 2.1 1 23 383 405 383 406 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF28-204 - 718 9.4e-44 144.3 152.5 8 18 0.00038 0.33 11.9 0.4 1 23 411 433 411 434 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF28-204 - 718 9.4e-44 144.3 152.5 9 18 1.7e-05 0.014 16.1 1.6 1 23 439 461 439 462 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF28-204 - 718 9.4e-44 144.3 152.5 10 18 1.4e-05 0.012 16.4 4.8 1 23 467 489 467 490 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF28-204 - 718 9.4e-44 144.3 152.5 11 18 0.0003 0.26 12.2 2.5 1 23 495 517 495 518 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF28-204 - 718 9.4e-44 144.3 152.5 12 18 0.00015 0.13 13.2 2.9 1 23 523 545 523 546 0.91 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF28-204 - 718 9.4e-44 144.3 152.5 13 18 1.1e-05 0.0091 16.8 2.7 1 23 551 573 551 574 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF28-204 - 718 9.4e-44 144.3 152.5 14 18 0.0001 0.088 13.7 1.8 1 23 579 601 579 602 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF28-204 - 718 9.4e-44 144.3 152.5 15 18 4.3e-05 0.036 14.9 0.7 1 23 607 629 607 630 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF28-204 - 718 9.4e-44 144.3 152.5 16 18 5.7e-05 0.049 14.5 2.6 1 23 635 657 635 658 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF28-204 - 718 9.4e-44 144.3 152.5 17 18 2e-05 0.017 15.9 0.9 1 23 663 685 663 686 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF28-204 - 718 9.4e-44 144.3 152.5 18 18 6.7e-05 0.058 14.3 2.3 1 23 691 713 691 714 0.92 C2H2-type zinc finger KRAB PF01352.27 42 ZNF28-204 - 718 1.2e-26 92.1 0.2 1 1 2.6e-29 2.2e-26 91.2 0.2 2 42 8 48 7 48 0.97 KRAB box zf-C2H2_6 PF13912.6 27 ZNF28-204 - 718 2.2e-21 75.3 138.4 1 17 0.0013 1.1 9.3 1.8 2 24 271 293 271 295 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF28-204 - 718 2.2e-21 75.3 138.4 2 17 0.00012 0.099 12.7 0.3 2 21 299 318 299 320 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF28-204 - 718 2.2e-21 75.3 138.4 3 17 0.005 4.3 7.4 1.2 2 11 327 336 327 337 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF28-204 - 718 2.2e-21 75.3 138.4 4 17 1.3e-05 0.011 15.7 0.5 2 24 355 377 355 380 0.90 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF28-204 - 718 2.2e-21 75.3 138.4 5 17 0.00089 0.76 9.8 1.8 2 24 383 405 383 408 0.90 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF28-204 - 718 2.2e-21 75.3 138.4 6 17 0.0013 1.1 9.4 0.5 2 13 411 422 411 433 0.87 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF28-204 - 718 2.2e-21 75.3 138.4 7 17 0.00024 0.2 11.7 0.6 2 14 439 451 439 463 0.83 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF28-204 - 718 2.2e-21 75.3 138.4 8 17 0.016 14 5.8 2.7 2 12 467 477 467 489 0.86 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF28-204 - 718 2.2e-21 75.3 138.4 9 17 0.00043 0.37 10.8 1.8 2 20 495 513 495 519 0.79 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF28-204 - 718 2.2e-21 75.3 138.4 10 17 0.0018 1.5 8.9 2.0 2 18 523 539 523 548 0.76 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF28-204 - 718 2.2e-21 75.3 138.4 11 17 0.055 47 4.1 4.5 2 13 551 562 551 574 0.77 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF28-204 - 718 2.2e-21 75.3 138.4 12 17 0.0016 1.4 9.0 0.7 2 12 579 589 579 590 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF28-204 - 718 2.2e-21 75.3 138.4 13 17 5.7 4.8e+03 -2.3 0.1 20 26 593 599 591 600 0.84 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF28-204 - 718 2.2e-21 75.3 138.4 14 17 2.4e-05 0.021 14.8 0.5 2 24 607 629 607 632 0.92 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF28-204 - 718 2.2e-21 75.3 138.4 15 17 0.00047 0.4 10.7 1.3 2 14 635 647 635 659 0.80 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF28-204 - 718 2.2e-21 75.3 138.4 16 17 0.00082 0.7 10.0 2.9 2 16 663 677 663 686 0.77 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF28-204 - 718 2.2e-21 75.3 138.4 17 17 0.00042 0.36 10.9 1.1 2 13 691 702 691 715 0.80 C2H2-type zinc finger zf-C2H2_jaz PF12171.8 27 ZNF28-204 - 718 5.7e-16 58.3 100.7 1 16 0.36 3e+02 1.8 0.2 2 13 271 282 270 289 0.83 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF28-204 - 718 5.7e-16 58.3 100.7 2 16 2.2e-05 0.019 15.3 0.5 2 21 299 318 298 319 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF28-204 - 718 5.7e-16 58.3 100.7 3 16 0.051 44 4.5 2.3 2 11 327 336 326 345 0.87 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF28-204 - 718 5.7e-16 58.3 100.7 4 16 0.012 10 6.5 0.0 2 21 355 374 354 375 0.90 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF28-204 - 718 5.7e-16 58.3 100.7 5 16 9.1e-05 0.078 13.3 0.5 2 22 383 403 382 403 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF28-204 - 718 5.7e-16 58.3 100.7 6 16 0.016 14 6.1 1.1 2 12 411 421 410 429 0.83 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF28-204 - 718 5.7e-16 58.3 100.7 7 16 0.013 11 6.4 0.2 2 20 439 457 438 457 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF28-204 - 718 5.7e-16 58.3 100.7 8 16 0.0051 4.3 7.7 1.6 2 21 467 486 466 487 0.83 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF28-204 - 718 5.7e-16 58.3 100.7 9 16 0.00024 0.2 12.0 0.9 2 21 495 514 494 515 0.89 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF28-204 - 718 5.7e-16 58.3 100.7 10 16 0.075 64 4.0 0.6 2 16 523 537 522 541 0.86 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF28-204 - 718 5.7e-16 58.3 100.7 11 16 0.00017 0.15 12.4 0.4 2 21 551 570 550 571 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF28-204 - 718 5.7e-16 58.3 100.7 12 16 5.8e-05 0.049 13.9 0.5 2 22 579 599 578 599 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF28-204 - 718 5.7e-16 58.3 100.7 13 16 0.17 1.4e+02 2.9 0.1 2 12 607 617 606 627 0.80 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF28-204 - 718 5.7e-16 58.3 100.7 14 16 0.019 17 5.9 0.2 2 20 635 653 634 653 0.89 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF28-204 - 718 5.7e-16 58.3 100.7 15 16 0.013 11 6.5 0.8 2 22 663 683 662 683 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF28-204 - 718 5.7e-16 58.3 100.7 16 16 0.027 23 5.4 0.3 2 20 691 709 690 709 0.88 Zinc-finger double-stranded RNA-binding zf-met PF12874.7 25 ZNF28-204 - 718 3.3e-15 55.9 117.1 1 17 4.8 4.1e+03 -1.6 0.1 8 19 222 233 221 234 0.89 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF28-204 - 718 3.3e-15 55.9 117.1 2 17 0.89 7.6e+02 0.7 0.3 1 19 271 289 271 291 0.86 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF28-204 - 718 3.3e-15 55.9 117.1 3 17 5.2e-05 0.044 14.2 0.9 1 19 299 317 299 318 0.96 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF28-204 - 718 3.3e-15 55.9 117.1 4 17 0.00017 0.14 12.6 1.7 1 19 327 345 327 348 0.94 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF28-204 - 718 3.3e-15 55.9 117.1 5 17 0.015 13 6.4 0.1 1 19 355 373 355 375 0.93 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF28-204 - 718 3.3e-15 55.9 117.1 6 17 0.00011 0.091 13.2 0.9 1 21 383 403 383 406 0.92 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF28-204 - 718 3.3e-15 55.9 117.1 7 17 0.0023 2 8.9 0.8 1 19 411 429 411 429 0.93 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF28-204 - 718 3.3e-15 55.9 117.1 8 17 0.011 9.3 6.8 0.4 1 19 439 457 439 457 0.95 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF28-204 - 718 3.3e-15 55.9 117.1 9 17 0.00035 0.3 11.5 2.0 1 20 467 486 467 490 0.91 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF28-204 - 718 3.3e-15 55.9 117.1 10 17 0.0013 1.2 9.7 1.7 1 20 495 514 495 517 0.89 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF28-204 - 718 3.3e-15 55.9 117.1 11 17 0.067 57 4.3 3.4 1 19 523 541 523 545 0.94 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF28-204 - 718 3.3e-15 55.9 117.1 12 17 0.0003 0.25 11.8 0.9 1 20 551 570 551 574 0.91 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF28-204 - 718 3.3e-15 55.9 117.1 13 17 3.7e-05 0.032 14.6 0.8 1 21 579 599 579 602 0.93 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF28-204 - 718 3.3e-15 55.9 117.1 14 17 0.27 2.3e+02 2.4 0.1 1 19 607 625 607 627 0.86 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF28-204 - 718 3.3e-15 55.9 117.1 15 17 0.34 2.9e+02 2.0 0.6 1 16 635 650 635 653 0.81 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF28-204 - 718 3.3e-15 55.9 117.1 16 17 0.0012 0.99 9.9 1.5 1 21 663 683 663 686 0.93 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF28-204 - 718 3.3e-15 55.9 117.1 17 17 0.41 3.5e+02 1.8 0.6 1 16 691 706 691 709 0.80 Zinc-finger of C2H2 type Zn-ribbon_8 PF09723.10 40 ZNF28-204 - 718 2.2e-11 43.7 107.1 1 15 0.0061 5.2 7.3 5.9 6 34 271 306 270 311 0.79 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF28-204 - 718 2.2e-11 43.7 107.1 2 15 0.066 56 4.0 7.1 6 34 299 334 298 339 0.85 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF28-204 - 718 2.2e-11 43.7 107.1 3 15 0.18 1.5e+02 2.6 0.5 6 16 327 337 320 347 0.91 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF28-204 - 718 2.2e-11 43.7 107.1 4 15 0.0003 0.26 11.5 0.1 6 21 355 370 354 378 0.86 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF28-204 - 718 2.2e-11 43.7 107.1 5 15 0.017 15 5.8 6.2 6 34 383 418 382 421 0.83 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF28-204 - 718 2.2e-11 43.7 107.1 6 15 0.0014 1.2 9.3 6.3 6 33 439 473 438 474 0.86 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF28-204 - 718 2.2e-11 43.7 107.1 7 15 0.014 12 6.1 7.7 6 35 467 503 466 507 0.86 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF28-204 - 718 2.2e-11 43.7 107.1 8 15 0.0032 2.7 8.2 5.1 6 34 495 530 494 536 0.92 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF28-204 - 718 2.2e-11 43.7 107.1 9 15 0.018 16 5.7 0.3 6 16 523 533 522 543 0.85 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF28-204 - 718 2.2e-11 43.7 107.1 10 15 0.0012 1 9.5 6.4 6 38 551 590 550 592 0.87 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF28-204 - 718 2.2e-11 43.7 107.1 11 15 0.00056 0.48 10.6 4.1 6 37 579 617 578 622 0.90 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF28-204 - 718 2.2e-11 43.7 107.1 12 15 0.0025 2.1 8.5 0.4 6 18 607 619 606 630 0.84 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF28-204 - 718 2.2e-11 43.7 107.1 13 15 0.00053 0.45 10.7 0.2 6 20 635 649 634 654 0.90 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF28-204 - 718 2.2e-11 43.7 107.1 14 15 1.4e-05 0.012 15.7 4.6 6 36 663 700 662 703 0.89 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF28-204 - 718 2.2e-11 43.7 107.1 15 15 0.00098 0.84 9.8 0.3 6 19 691 704 690 707 0.89 Zinc ribbon domain BolA PF01722.18 76 ZNF28-204 - 718 8e-09 35.7 32.3 1 11 0.24 2e+02 2.3 0.3 19 50 230 262 188 264 0.59 BolA-like protein BolA PF01722.18 76 ZNF28-204 - 718 8e-09 35.7 32.3 2 11 0.042 36 4.7 0.0 16 53 312 349 288 351 0.81 BolA-like protein BolA PF01722.18 76 ZNF28-204 - 718 8e-09 35.7 32.3 3 11 0.048 41 4.5 0.1 24 52 348 376 339 378 0.80 BolA-like protein BolA PF01722.18 76 ZNF28-204 - 718 8e-09 35.7 32.3 4 11 0.068 58 4.1 1.4 19 53 373 405 362 407 0.78 BolA-like protein BolA PF01722.18 76 ZNF28-204 - 718 8e-09 35.7 32.3 5 11 0.0025 2.1 8.7 0.2 15 53 395 433 391 436 0.87 BolA-like protein BolA PF01722.18 76 ZNF28-204 - 718 8e-09 35.7 32.3 6 11 0.092 79 3.6 0.0 24 52 432 460 410 472 0.74 BolA-like protein BolA PF01722.18 76 ZNF28-204 - 718 8e-09 35.7 32.3 7 11 0.004 3.4 8.0 1.0 15 53 451 489 443 490 0.84 BolA-like protein BolA PF01722.18 76 ZNF28-204 - 718 8e-09 35.7 32.3 8 11 0.0031 2.7 8.4 0.2 16 53 480 517 478 526 0.88 BolA-like protein BolA PF01722.18 76 ZNF28-204 - 718 8e-09 35.7 32.3 9 11 0.0077 6.5 7.1 1.0 21 53 541 573 532 574 0.85 BolA-like protein BolA PF01722.18 76 ZNF28-204 - 718 8e-09 35.7 32.3 10 11 0.00039 0.33 11.3 2.0 15 53 563 601 562 605 0.91 BolA-like protein BolA PF01722.18 76 ZNF28-204 - 718 8e-09 35.7 32.3 11 11 0.063 54 4.2 0.4 17 53 649 685 639 712 0.84 BolA-like protein # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF28-204.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF28-204.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF28-204.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF28-204.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF28-204.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:03:16 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- KRAB PF01352.27 42 ZNF28-205 - 74 1e-28 98.7 0.1 1 1 7.4e-33 1.3e-28 98.3 0.1 1 42 7 48 7 48 0.98 KRAB box # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF28-205.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF28-205.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF28-205.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF28-205.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF28-205.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:03:17 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF28-206.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF28-206.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF28-206.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF28-206.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF28-206.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:03:17 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- KRAB PF01352.27 42 ZNF28-207 - 129 1.6e-27 94.8 0.2 1 2 9.2e-32 1.6e-27 94.8 0.2 1 42 7 48 7 48 0.97 KRAB box KRAB PF01352.27 42 ZNF28-207 - 129 1.6e-27 94.8 0.2 2 2 0.71 1.3e+04 -4.0 0.2 16 23 59 66 58 66 0.73 KRAB box # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF28-207.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF28-207.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF28-207.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF28-207.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF28-207.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:03:17 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF28-208.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF28-208.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF28-208.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF28-208.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF28-208.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:03:18 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF282-201.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF282-201.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF282-201.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF282-201.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF282-201.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:03:18 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF282-202.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF282-202.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF282-202.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF282-202.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF282-202.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:03:18 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- KRAB PF01352.27 42 ZNF282-203 - 463 1.4e-17 63.0 0.5 1 3 0.7 6.3e+03 -3.1 0.2 32 38 168 174 167 175 0.86 KRAB box KRAB PF01352.27 42 ZNF282-203 - 463 1.4e-17 63.0 0.5 2 3 1.6e-21 1.4e-17 63.0 0.5 1 42 197 238 197 238 0.99 KRAB box KRAB PF01352.27 42 ZNF282-203 - 463 1.4e-17 63.0 0.5 3 3 0.84 7.6e+03 -3.3 0.2 13 23 332 342 324 349 0.63 KRAB box DUF3669 PF12417.8 72 ZNF282-203 - 463 9.3e-10 38.6 0.1 1 1 2.6e-13 2.4e-09 37.3 0.1 1 71 98 167 98 168 0.93 Zinc finger protein # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF282-203.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF282-203.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF282-203.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF282-203.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF282-203.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:03:19 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZNF282-204 - 671 7.4e-34 114.7 28.8 1 6 5e-05 0.053 14.0 0.0 3 24 505 527 503 528 0.73 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF282-204 - 671 7.4e-34 114.7 28.8 2 6 1.1e-07 0.00012 22.3 3.1 5 25 536 556 532 557 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF282-204 - 671 7.4e-34 114.7 28.8 3 6 2.8e-09 3e-06 27.4 0.7 2 25 561 584 560 585 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF282-204 - 671 7.4e-34 114.7 28.8 4 6 6.9e-11 7.3e-08 32.5 0.4 1 24 588 611 588 613 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF282-204 - 671 7.4e-34 114.7 28.8 5 6 1.5e-10 1.5e-07 31.5 0.5 1 25 616 640 616 641 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF282-204 - 671 7.4e-34 114.7 28.8 6 6 0.19 2e+02 2.7 0.0 1 11 644 654 644 658 0.84 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZNF282-204 - 671 1.3e-25 88.4 37.3 1 5 7.5e-07 0.00079 19.7 1.0 1 23 518 540 518 540 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF282-204 - 671 1.3e-25 88.4 37.3 2 5 6.4e-05 0.068 13.7 2.9 1 23 546 568 546 568 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF282-204 - 671 1.3e-25 88.4 37.3 3 5 4.9e-08 5.2e-05 23.5 3.9 1 23 574 596 574 596 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF282-204 - 671 1.3e-25 88.4 37.3 4 5 1e-08 1.1e-05 25.7 0.6 1 23 602 624 602 624 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF282-204 - 671 1.3e-25 88.4 37.3 5 5 3.5e-09 3.7e-06 27.1 0.8 1 23 630 652 630 652 0.99 Zinc finger, C2H2 type KRAB PF01352.27 42 ZNF282-204 - 671 2.2e-17 62.4 0.5 1 2 8.9 9.4e+03 -3.6 0.2 32 38 168 174 167 175 0.86 KRAB box KRAB PF01352.27 42 ZNF282-204 - 671 2.2e-17 62.4 0.5 2 2 2.1e-20 2.2e-17 62.4 0.5 1 42 197 238 197 238 0.99 KRAB box zf-C2H2_4 PF13894.6 24 ZNF282-204 - 671 4.7e-17 61.2 36.2 1 5 4.7e-05 0.05 14.5 0.9 1 23 518 540 518 541 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF282-204 - 671 4.7e-17 61.2 36.2 2 5 6.1e-05 0.064 14.1 2.9 1 23 546 568 546 569 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF282-204 - 671 4.7e-17 61.2 36.2 3 5 6.6e-06 0.007 17.1 3.0 1 23 574 596 574 597 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF282-204 - 671 4.7e-17 61.2 36.2 4 5 5.2e-06 0.0055 17.4 0.6 1 23 602 624 602 625 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF282-204 - 671 4.7e-17 61.2 36.2 5 5 1.7e-06 0.0018 19.0 0.7 1 23 630 652 630 653 0.95 C2H2-type zinc finger DUF3669 PF12417.8 72 ZNF282-204 - 671 1.8e-09 37.7 0.1 1 1 3.8e-12 4e-09 36.5 0.1 1 71 98 167 98 168 0.92 Zinc finger protein zf-C2H2_6 PF13912.6 27 ZNF282-204 - 671 7.1e-07 29.1 34.6 1 5 3.3e-05 0.035 14.1 1.1 2 26 518 542 518 543 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF282-204 - 671 7.1e-07 29.1 34.6 2 5 0.0029 3.1 7.9 3.1 2 26 546 570 546 571 0.86 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF282-204 - 671 7.1e-07 29.1 34.6 3 5 0.0036 3.8 7.6 0.9 2 12 574 584 574 594 0.92 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF282-204 - 671 7.1e-07 29.1 34.6 4 5 0.001 1.1 9.4 0.5 2 24 602 624 602 627 0.89 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF282-204 - 671 7.1e-07 29.1 34.6 5 5 0.00054 0.57 10.2 1.4 2 24 630 652 630 654 0.91 C2H2-type zinc finger # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF282-204.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF282-204.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF282-204.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF282-204.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF282-204.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:03:19 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZNF283-201 - 612 6.2e-130 418.4 129.9 1 17 4.9e-05 0.052 14.0 3.2 5 26 130 151 126 151 0.90 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF283-201 - 612 6.2e-130 418.4 129.9 2 17 6.5e-08 6.8e-05 23.1 2.4 2 25 155 178 154 179 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF283-201 - 612 6.2e-130 418.4 129.9 3 17 8.7e-12 9.2e-09 35.3 1.1 2 25 183 206 182 206 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF283-201 - 612 6.2e-130 418.4 129.9 4 17 9.2e-13 9.7e-10 38.4 0.7 1 25 210 234 210 235 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF283-201 - 612 6.2e-130 418.4 129.9 5 17 5.3e-09 5.6e-06 26.6 2.4 1 24 238 261 238 262 0.97 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF283-201 - 612 6.2e-130 418.4 129.9 6 17 2.9e-11 3.1e-08 33.7 0.6 2 25 267 290 266 291 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF283-201 - 612 6.2e-130 418.4 129.9 7 17 9.4e-11 9.9e-08 32.1 0.8 2 24 295 317 294 317 0.97 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF283-201 - 612 6.2e-130 418.4 129.9 8 17 8.1e-12 8.5e-09 35.5 2.1 2 25 323 346 322 347 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF283-201 - 612 6.2e-130 418.4 129.9 9 17 6.3e-12 6.6e-09 35.8 0.3 2 25 351 374 350 375 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF283-201 - 612 6.2e-130 418.4 129.9 10 17 8.2e-12 8.7e-09 35.4 1.6 1 25 378 402 378 402 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF283-201 - 612 6.2e-130 418.4 129.9 11 17 2.2e-10 2.4e-07 30.9 2.0 1 24 406 429 406 429 0.97 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF283-201 - 612 6.2e-130 418.4 129.9 12 17 5.3e-11 5.5e-08 32.9 2.4 2 25 435 458 434 459 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF283-201 - 612 6.2e-130 418.4 129.9 13 17 1.6e-12 1.7e-09 37.7 0.3 1 25 462 486 462 487 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF283-201 - 612 6.2e-130 418.4 129.9 14 17 3.5e-11 3.7e-08 33.4 2.5 1 25 490 514 490 514 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF283-201 - 612 6.2e-130 418.4 129.9 15 17 8.2e-11 8.7e-08 32.3 0.4 1 25 518 542 518 543 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF283-201 - 612 6.2e-130 418.4 129.9 16 17 0.00048 0.51 10.9 0.2 2 16 547 561 546 571 0.85 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF283-201 - 612 6.2e-130 418.4 129.9 17 17 0.0001 0.11 13.0 0.1 5 24 577 596 576 597 0.95 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZNF283-201 - 612 4.6e-60 196.9 113.7 1 17 1.2 1.2e+03 0.2 0.2 9 23 120 134 119 134 0.91 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF283-201 - 612 4.6e-60 196.9 113.7 2 17 5.1e-06 0.0053 17.1 2.5 1 23 140 162 140 162 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF283-201 - 612 4.6e-60 196.9 113.7 3 17 1.5e-05 0.016 15.6 0.7 1 23 168 190 168 190 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF283-201 - 612 4.6e-60 196.9 113.7 4 17 4.4e-06 0.0046 17.3 0.2 1 23 196 218 196 218 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF283-201 - 612 4.6e-60 196.9 113.7 5 17 2.7e-08 2.8e-05 24.3 1.6 1 23 224 246 224 246 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF283-201 - 612 4.6e-60 196.9 113.7 6 17 0.00031 0.33 11.5 0.1 1 23 252 274 252 274 0.89 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF283-201 - 612 4.6e-60 196.9 113.7 7 17 1.7e-08 1.8e-05 25.0 0.9 1 23 280 302 280 302 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF283-201 - 612 4.6e-60 196.9 113.7 8 17 6.6e-05 0.07 13.6 1.3 1 23 308 330 308 330 0.95 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF283-201 - 612 4.6e-60 196.9 113.7 9 17 5.2e-05 0.055 14.0 0.5 1 23 336 358 336 358 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF283-201 - 612 4.6e-60 196.9 113.7 10 17 7.3e-08 7.7e-05 22.9 1.5 1 23 364 386 364 386 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF283-201 - 612 4.6e-60 196.9 113.7 11 17 1.1e-05 0.012 16.0 0.1 1 23 392 414 392 414 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF283-201 - 612 4.6e-60 196.9 113.7 12 17 1.3e-05 0.014 15.8 4.5 1 23 420 442 420 442 0.92 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF283-201 - 612 4.6e-60 196.9 113.7 13 17 4.2e-05 0.044 14.2 0.6 1 23 448 470 448 470 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF283-201 - 612 4.6e-60 196.9 113.7 14 17 2.7e-08 2.8e-05 24.3 1.6 1 23 476 498 476 498 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF283-201 - 612 4.6e-60 196.9 113.7 15 17 5.5e-06 0.0058 17.0 0.2 1 23 504 526 504 526 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF283-201 - 612 4.6e-60 196.9 113.7 16 17 4.6e-07 0.00049 20.4 0.3 1 23 532 554 532 554 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF283-201 - 612 4.6e-60 196.9 113.7 17 17 4.6 4.9e+03 -1.6 0.1 8 23 567 581 566 581 0.74 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZNF283-201 - 612 1e-41 138.0 115.0 1 16 0.0026 2.8 9.0 2.7 1 23 140 162 140 163 0.90 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF283-201 - 612 1e-41 138.0 115.0 2 16 1.7e-05 0.018 15.9 0.7 1 23 168 190 168 191 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF283-201 - 612 1e-41 138.0 115.0 3 16 5.9e-05 0.062 14.2 0.4 1 23 196 218 196 219 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF283-201 - 612 1e-41 138.0 115.0 4 16 1.6e-05 0.017 15.9 1.3 1 23 224 246 224 247 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF283-201 - 612 1e-41 138.0 115.0 5 16 0.0047 5 8.2 0.3 1 23 252 274 252 275 0.85 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF283-201 - 612 1e-41 138.0 115.0 6 16 5.4e-06 0.0057 17.4 0.8 1 23 280 302 280 303 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF283-201 - 612 1e-41 138.0 115.0 7 16 0.00087 0.92 10.5 1.7 1 23 308 330 308 331 0.88 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF283-201 - 612 1e-41 138.0 115.0 8 16 1.5e-05 0.016 16.0 0.7 1 23 336 358 336 359 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF283-201 - 612 1e-41 138.0 115.0 9 16 7.7e-06 0.0081 16.9 1.4 1 23 364 386 364 387 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF283-201 - 612 1e-41 138.0 115.0 10 16 0.00019 0.2 12.6 0.3 1 23 392 414 392 415 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF283-201 - 612 1e-41 138.0 115.0 11 16 9e-05 0.095 13.6 4.1 1 23 420 442 420 443 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF283-201 - 612 1e-41 138.0 115.0 12 16 1.9e-05 0.02 15.7 0.9 1 23 448 470 448 471 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF283-201 - 612 1e-41 138.0 115.0 13 16 1.6e-05 0.017 15.9 1.3 1 23 476 498 476 499 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF283-201 - 612 1e-41 138.0 115.0 14 16 0.00012 0.12 13.2 0.5 1 23 504 526 504 527 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF283-201 - 612 1e-41 138.0 115.0 15 16 2.4e-05 0.026 15.4 0.4 1 23 532 554 532 555 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF283-201 - 612 1e-41 138.0 115.0 16 16 0.56 5.9e+02 1.8 0.1 7 23 566 581 566 582 0.79 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF283-201 - 612 2.4e-34 116.7 131.2 1 15 0.065 68 3.6 2.4 2 10 140 148 139 165 0.78 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF283-201 - 612 2.4e-34 116.7 131.2 2 15 0.001 1.1 9.4 2.3 1 22 167 188 167 192 0.86 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF283-201 - 612 2.4e-34 116.7 131.2 3 15 8e-06 0.0085 16.1 0.7 2 22 196 216 196 220 0.89 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF283-201 - 612 2.4e-34 116.7 131.2 4 15 4.2e-06 0.0044 17.0 3.0 2 24 224 246 224 248 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF283-201 - 612 2.4e-34 116.7 131.2 5 15 0.00071 0.75 9.9 0.5 2 11 252 261 251 274 0.79 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF283-201 - 612 2.4e-34 116.7 131.2 6 15 3.1e-06 0.0033 17.4 2.7 2 24 280 302 280 305 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF283-201 - 612 2.4e-34 116.7 131.2 7 15 0.002 2.1 8.4 1.8 2 20 308 326 308 330 0.79 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF283-201 - 612 2.4e-34 116.7 131.2 8 15 2.4e-05 0.026 14.5 1.4 2 24 336 358 336 361 0.90 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF283-201 - 612 2.4e-34 116.7 131.2 9 15 1.8e-05 0.019 15.0 2.9 2 24 364 386 364 389 0.90 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF283-201 - 612 2.4e-34 116.7 131.2 10 15 3.1e-05 0.033 14.2 0.6 2 24 392 414 392 417 0.90 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF283-201 - 612 2.4e-34 116.7 131.2 11 15 1.9e-05 0.02 14.9 4.5 2 20 420 438 419 439 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF283-201 - 612 2.4e-34 116.7 131.2 12 15 0.00019 0.2 11.7 1.7 2 21 448 467 448 472 0.85 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF283-201 - 612 2.4e-34 116.7 131.2 13 15 3.1e-06 0.0032 17.4 2.8 2 24 476 498 476 501 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF283-201 - 612 2.4e-34 116.7 131.2 14 15 8.1e-05 0.085 12.9 1.0 2 22 504 524 504 527 0.89 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF283-201 - 612 2.4e-34 116.7 131.2 15 15 8.3e-05 0.088 12.8 1.2 2 20 532 550 531 556 0.86 C2H2-type zinc finger KRAB PF01352.27 42 ZNF283-201 - 612 7.8e-27 92.7 0.3 1 1 1.7e-29 1.8e-26 91.5 0.3 1 42 5 46 5 46 0.99 KRAB box zf-C2H2_jaz PF12171.8 27 ZNF283-201 - 612 6.5e-19 67.7 71.1 1 15 0.013 13 6.2 2.0 2 24 140 162 139 167 0.91 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF283-201 - 612 6.5e-19 67.7 71.1 2 15 0.00018 0.18 12.1 0.7 2 22 168 188 167 188 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF283-201 - 612 6.5e-19 67.7 71.1 3 15 0.0018 1.9 8.8 0.0 2 22 196 216 195 216 0.87 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF283-201 - 612 6.5e-19 67.7 71.1 4 15 0.0018 1.9 8.9 0.3 2 22 224 244 223 244 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF283-201 - 612 6.5e-19 67.7 71.1 5 15 0.18 1.9e+02 2.5 0.2 2 11 252 261 251 271 0.87 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF283-201 - 612 6.5e-19 67.7 71.1 6 15 0.00022 0.24 11.8 0.2 2 22 280 300 279 300 0.95 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF283-201 - 612 6.5e-19 67.7 71.1 7 15 0.13 1.4e+02 2.9 0.4 2 11 308 317 307 317 0.89 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF283-201 - 612 6.5e-19 67.7 71.1 8 15 0.011 12 6.3 0.2 2 22 336 356 335 356 0.86 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF283-201 - 612 6.5e-19 67.7 71.1 9 15 0.0037 3.9 7.9 0.3 2 22 364 384 363 384 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF283-201 - 612 6.5e-19 67.7 71.1 10 15 0.0068 7.2 7.0 0.0 2 22 392 412 391 412 0.87 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF283-201 - 612 6.5e-19 67.7 71.1 11 15 0.0092 9.7 6.6 1.3 2 20 420 438 419 439 0.89 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF283-201 - 612 6.5e-19 67.7 71.1 12 15 0.0049 5.2 7.5 0.2 2 22 448 468 447 468 0.91 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF283-201 - 612 6.5e-19 67.7 71.1 13 15 0.0018 1.9 8.9 0.3 2 22 476 496 475 496 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF283-201 - 612 6.5e-19 67.7 71.1 14 15 0.0086 9.1 6.7 0.0 2 22 504 524 503 524 0.87 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF283-201 - 612 6.5e-19 67.7 71.1 15 15 0.0084 8.8 6.7 0.0 2 22 532 552 531 552 0.92 Zinc-finger double-stranded RNA-binding XPA_N PF01286.18 32 ZNF283-201 - 612 2e-12 46.9 71.5 1 16 0.17 1.8e+02 2.3 0.5 3 10 141 148 140 158 0.80 XPA protein N-terminal XPA_N PF01286.18 32 ZNF283-201 - 612 2e-12 46.9 71.5 2 16 0.026 27 4.9 0.1 3 15 169 181 168 186 0.85 XPA protein N-terminal XPA_N PF01286.18 32 ZNF283-201 - 612 2e-12 46.9 71.5 3 16 0.0082 8.6 6.5 0.1 3 11 197 205 195 212 0.91 XPA protein N-terminal XPA_N PF01286.18 32 ZNF283-201 - 612 2e-12 46.9 71.5 4 16 0.0033 3.5 7.7 0.1 3 15 225 237 223 242 0.83 XPA protein N-terminal XPA_N PF01286.18 32 ZNF283-201 - 612 2e-12 46.9 71.5 5 16 0.019 20 5.4 0.3 3 11 253 261 252 263 0.93 XPA protein N-terminal XPA_N PF01286.18 32 ZNF283-201 - 612 2e-12 46.9 71.5 6 16 0.004 4.2 7.5 0.1 3 13 281 291 279 297 0.84 XPA protein N-terminal XPA_N PF01286.18 32 ZNF283-201 - 612 2e-12 46.9 71.5 7 16 0.21 2.2e+02 2.0 0.2 3 12 309 318 307 325 0.85 XPA protein N-terminal XPA_N PF01286.18 32 ZNF283-201 - 612 2e-12 46.9 71.5 8 16 0.013 14 5.8 0.6 3 11 337 345 335 354 0.86 XPA protein N-terminal XPA_N PF01286.18 32 ZNF283-201 - 612 2e-12 46.9 71.5 9 16 0.004 4.2 7.5 0.1 3 15 365 377 363 382 0.83 XPA protein N-terminal XPA_N PF01286.18 32 ZNF283-201 - 612 2e-12 46.9 71.5 10 16 0.012 12 6.0 0.1 3 11 393 401 391 408 0.91 XPA protein N-terminal XPA_N PF01286.18 32 ZNF283-201 - 612 2e-12 46.9 71.5 11 16 0.0022 2.3 8.3 0.8 3 15 421 433 419 439 0.85 XPA protein N-terminal XPA_N PF01286.18 32 ZNF283-201 - 612 2e-12 46.9 71.5 12 16 0.013 13 5.9 0.6 3 11 449 457 447 466 0.86 XPA protein N-terminal XPA_N PF01286.18 32 ZNF283-201 - 612 2e-12 46.9 71.5 13 16 0.0033 3.5 7.7 0.1 3 15 477 489 475 494 0.83 XPA protein N-terminal XPA_N PF01286.18 32 ZNF283-201 - 612 2e-12 46.9 71.5 14 16 0.0095 10 6.3 0.1 3 11 505 513 503 520 0.91 XPA protein N-terminal XPA_N PF01286.18 32 ZNF283-201 - 612 2e-12 46.9 71.5 15 16 0.015 16 5.6 0.1 3 14 533 544 532 549 0.85 XPA protein N-terminal XPA_N PF01286.18 32 ZNF283-201 - 612 2e-12 46.9 71.5 16 16 1.5 1.6e+03 -0.7 0.0 6 17 591 598 590 603 0.59 XPA protein N-terminal zf-C2H2_11 PF16622.5 29 ZNF283-201 - 612 3.9e-12 45.7 72.1 1 15 2 2.1e+03 -1.4 1.1 4 11 139 146 137 153 0.81 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF283-201 - 612 3.9e-12 45.7 72.1 2 15 0.0041 4.4 7.2 0.2 7 24 170 187 167 189 0.89 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF283-201 - 612 3.9e-12 45.7 72.1 3 15 0.0011 1.2 9.0 0.0 6 26 197 217 194 218 0.93 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF283-201 - 612 3.9e-12 45.7 72.1 4 15 0.049 52 3.7 0.3 6 26 225 245 222 246 0.84 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF283-201 - 612 3.9e-12 45.7 72.1 5 15 0.0013 1.4 8.8 0.1 4 26 251 273 249 274 0.90 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF283-201 - 612 3.9e-12 45.7 72.1 6 15 0.0092 9.7 6.1 0.2 5 26 280 301 277 302 0.85 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF283-201 - 612 3.9e-12 45.7 72.1 7 15 0.49 5.2e+02 0.5 0.5 7 23 310 326 307 330 0.82 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF283-201 - 612 3.9e-12 45.7 72.1 8 15 0.027 29 4.5 0.3 6 26 337 357 334 358 0.90 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF283-201 - 612 3.9e-12 45.7 72.1 9 15 0.011 12 5.8 0.4 6 26 365 385 362 386 0.90 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF283-201 - 612 3.9e-12 45.7 72.1 10 15 0.0036 3.8 7.4 0.0 6 25 393 412 390 414 0.89 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF283-201 - 612 3.9e-12 45.7 72.1 11 15 0.0005 0.52 10.1 2.4 3 23 418 438 417 442 0.91 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF283-201 - 612 3.9e-12 45.7 72.1 12 15 0.019 21 5.0 0.2 6 26 449 469 446 470 0.91 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF283-201 - 612 3.9e-12 45.7 72.1 13 15 0.049 52 3.7 0.3 6 26 477 497 474 498 0.84 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF283-201 - 612 3.9e-12 45.7 72.1 14 15 0.0008 0.84 9.5 0.0 5 25 504 524 501 526 0.90 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF283-201 - 612 3.9e-12 45.7 72.1 15 15 0.0027 2.8 7.8 0.1 1 23 528 550 528 553 0.89 zinc-finger C2H2-type Zn-ribbon_8 PF09723.10 40 ZNF283-201 - 612 3.7e-11 42.9 98.9 1 15 0.034 36 4.6 0.9 19 34 131 147 125 155 0.65 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF283-201 - 612 3.7e-11 42.9 98.9 2 15 0.15 1.6e+02 2.5 7.6 6 35 140 176 138 180 0.71 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF283-201 - 612 3.7e-11 42.9 98.9 3 15 0.0023 2.4 8.3 6.4 6 34 168 203 166 206 0.90 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF283-201 - 612 3.7e-11 42.9 98.9 4 15 1.5e-05 0.016 15.3 4.9 6 38 196 235 195 237 0.89 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF283-201 - 612 3.7e-11 42.9 98.9 5 15 0.00032 0.34 11.1 6.1 6 34 224 259 223 262 0.93 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF283-201 - 612 3.7e-11 42.9 98.9 6 15 0.0081 8.5 6.6 0.8 6 15 252 261 249 271 0.90 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF283-201 - 612 3.7e-11 42.9 98.9 7 15 6.8e-05 0.072 13.2 4.8 6 34 280 315 279 318 0.94 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF283-201 - 612 3.7e-11 42.9 98.9 8 15 0.00022 0.23 11.6 7.4 6 38 336 375 335 377 0.87 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF283-201 - 612 3.7e-11 42.9 98.9 9 15 7.5e-05 0.079 13.1 5.6 6 34 364 399 363 402 0.92 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF283-201 - 612 3.7e-11 42.9 98.9 10 15 0.002 2.2 8.5 6.1 6 34 392 427 391 431 0.85 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF283-201 - 612 3.7e-11 42.9 98.9 11 15 0.033 35 4.6 8.2 7 34 421 455 419 458 0.83 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF283-201 - 612 3.7e-11 42.9 98.9 12 15 0.00025 0.26 11.4 7.7 6 38 448 487 447 489 0.87 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF283-201 - 612 3.7e-11 42.9 98.9 13 15 3.6e-05 0.038 14.1 4.6 6 34 476 511 475 514 0.92 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF283-201 - 612 3.7e-11 42.9 98.9 14 15 0.0015 1.5 9.0 5.4 6 34 504 539 502 543 0.85 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF283-201 - 612 3.7e-11 42.9 98.9 15 15 0.008 8.4 6.6 0.7 6 15 532 541 530 556 0.87 Zinc ribbon domain zf_UBZ PF18439.1 32 ZNF283-201 - 612 6.8e-08 32.0 78.3 1 15 0.0064 6.7 6.4 1.0 2 16 139 154 138 159 0.74 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF283-201 - 612 6.8e-08 32.0 78.3 2 15 0.0018 1.9 8.1 0.4 2 24 167 190 166 191 0.86 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF283-201 - 612 6.8e-08 32.0 78.3 3 15 0.0093 9.8 5.9 0.1 3 13 196 206 194 214 0.90 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF283-201 - 612 6.8e-08 32.0 78.3 4 15 0.0073 7.7 6.2 0.3 3 20 224 242 222 243 0.80 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF283-201 - 612 6.8e-08 32.0 78.3 5 15 0.014 15 5.3 0.2 2 11 251 260 250 263 0.88 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF283-201 - 612 6.8e-08 32.0 78.3 6 15 0.00093 0.98 9.1 0.1 3 21 280 299 278 299 0.91 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF283-201 - 612 6.8e-08 32.0 78.3 7 15 0.34 3.6e+02 0.9 0.5 3 12 308 317 306 327 0.88 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF283-201 - 612 6.8e-08 32.0 78.3 8 15 0.018 19 4.9 0.8 3 20 336 354 334 355 0.77 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF283-201 - 612 6.8e-08 32.0 78.3 9 15 0.01 11 5.7 0.3 3 15 364 376 362 383 0.76 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF283-201 - 612 6.8e-08 32.0 78.3 10 15 0.034 36 4.1 0.1 3 13 392 402 390 407 0.88 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF283-201 - 612 6.8e-08 32.0 78.3 11 15 0.047 49 3.6 1.7 2 21 419 439 418 442 0.76 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF283-201 - 612 6.8e-08 32.0 78.3 12 15 0.019 20 4.9 0.7 3 17 448 463 446 467 0.75 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF283-201 - 612 6.8e-08 32.0 78.3 13 15 0.0073 7.7 6.2 0.3 3 20 476 494 474 495 0.80 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF283-201 - 612 6.8e-08 32.0 78.3 14 15 0.024 25 4.6 0.1 3 13 504 514 502 519 0.88 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF283-201 - 612 6.8e-08 32.0 78.3 15 15 0.013 14 5.4 0.1 2 14 531 543 530 556 0.76 Ubiquitin-Binding Zinc Finger zf-trcl PF13451.6 48 ZNF283-201 - 612 7.2e-08 32.2 77.0 1 16 0.13 1.3e+02 2.5 1.3 3 12 138 147 136 150 0.86 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF283-201 - 612 7.2e-08 32.2 77.0 2 16 0.048 50 3.9 0.2 2 13 165 176 164 178 0.86 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF283-201 - 612 7.2e-08 32.2 77.0 3 16 0.0035 3.7 7.5 0.1 3 16 194 207 192 210 0.88 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF283-201 - 612 7.2e-08 32.2 77.0 4 16 0.042 44 4.1 0.1 3 14 222 233 220 234 0.87 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF283-201 - 612 7.2e-08 32.2 77.0 5 16 0.0029 3 7.8 0.2 3 17 250 264 250 270 0.87 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF283-201 - 612 7.2e-08 32.2 77.0 6 16 0.015 16 5.5 0.2 3 14 278 289 276 290 0.87 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF283-201 - 612 7.2e-08 32.2 77.0 7 16 0.046 49 3.9 0.4 3 16 306 319 305 323 0.89 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF283-201 - 612 7.2e-08 32.2 77.0 8 16 0.042 44 4.1 0.2 3 14 334 345 332 346 0.87 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF283-201 - 612 7.2e-08 32.2 77.0 9 16 0.042 44 4.1 0.1 3 14 362 373 360 374 0.87 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF283-201 - 612 7.2e-08 32.2 77.0 10 16 0.0044 4.6 7.2 0.1 3 16 390 403 388 406 0.88 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF283-201 - 612 7.2e-08 32.2 77.0 11 16 0.43 4.6e+02 0.8 2.4 4 14 419 429 417 431 0.83 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF283-201 - 612 7.2e-08 32.2 77.0 12 16 0.042 44 4.1 0.2 3 14 446 457 444 458 0.87 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF283-201 - 612 7.2e-08 32.2 77.0 13 16 0.042 44 4.1 0.1 3 14 474 485 472 486 0.87 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF283-201 - 612 7.2e-08 32.2 77.0 14 16 0.0016 1.6 8.6 0.2 3 16 502 515 500 518 0.88 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF283-201 - 612 7.2e-08 32.2 77.0 15 16 0.016 17 5.4 0.3 3 14 530 541 528 542 0.87 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF283-201 - 612 7.2e-08 32.2 77.0 16 16 0.037 39 4.2 0.0 2 18 584 600 583 604 0.89 Probable zinc-ribbon domain C1_4 PF07975.12 55 ZNF283-201 - 612 8.9e-07 29.1 72.5 1 13 0.8 8.4e+02 0.3 1.3 18 34 132 148 118 163 0.72 TFIIH C1-like domain C1_4 PF07975.12 55 ZNF283-201 - 612 8.9e-07 29.1 72.5 2 13 0.24 2.6e+02 2.0 6.1 2 49 142 191 141 194 0.76 TFIIH C1-like domain C1_4 PF07975.12 55 ZNF283-201 - 612 8.9e-07 29.1 72.5 3 13 0.02 22 5.4 0.0 25 49 195 219 191 221 0.89 TFIIH C1-like domain C1_4 PF07975.12 55 ZNF283-201 - 612 8.9e-07 29.1 72.5 4 13 0.00072 0.76 10.1 1.9 1 49 225 275 225 277 0.85 TFIIH C1-like domain C1_4 PF07975.12 55 ZNF283-201 - 612 8.9e-07 29.1 72.5 5 13 0.00016 0.17 12.1 2.9 1 49 281 331 281 333 0.85 TFIIH C1-like domain C1_4 PF07975.12 55 ZNF283-201 - 612 8.9e-07 29.1 72.5 6 13 0.017 18 5.6 0.7 24 49 334 359 325 361 0.87 TFIIH C1-like domain C1_4 PF07975.12 55 ZNF283-201 - 612 8.9e-07 29.1 72.5 7 13 0.12 1.3e+02 2.9 4.2 2 36 338 374 337 387 0.72 TFIIH C1-like domain C1_4 PF07975.12 55 ZNF283-201 - 612 8.9e-07 29.1 72.5 8 13 0.0013 1.4 9.2 1.3 1 49 365 415 365 419 0.84 TFIIH C1-like domain C1_4 PF07975.12 55 ZNF283-201 - 612 8.9e-07 29.1 72.5 9 13 0.012 13 6.2 4.9 1 48 393 442 393 445 0.78 TFIIH C1-like domain C1_4 PF07975.12 55 ZNF283-201 - 612 8.9e-07 29.1 72.5 10 13 0.03 32 4.9 6.8 1 49 421 471 421 474 0.87 TFIIH C1-like domain C1_4 PF07975.12 55 ZNF283-201 - 612 8.9e-07 29.1 72.5 11 13 0.051 54 4.1 3.9 1 37 449 487 449 501 0.73 TFIIH C1-like domain C1_4 PF07975.12 55 ZNF283-201 - 612 8.9e-07 29.1 72.5 12 13 0.0018 1.8 8.8 1.7 1 49 477 527 477 529 0.86 TFIIH C1-like domain C1_4 PF07975.12 55 ZNF283-201 - 612 8.9e-07 29.1 72.5 13 13 0.0015 1.6 9.0 1.3 2 49 506 555 505 557 0.82 TFIIH C1-like domain # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF283-201.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF283-201.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF283-201.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF283-201.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF283-201.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:03:19 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF283-202.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF283-202.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF283-202.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF283-202.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF283-202.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:03:20 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZNF283-203 - 540 5.3e-131 421.8 129.9 1 17 4.5e-05 0.045 14.2 3.2 5 26 58 79 54 79 0.90 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF283-203 - 540 5.3e-131 421.8 129.9 2 17 5.9e-08 5.9e-05 23.3 2.4 2 25 83 106 82 107 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF283-203 - 540 5.3e-131 421.8 129.9 3 17 8e-12 7.9e-09 35.6 1.1 2 25 111 134 110 134 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF283-203 - 540 5.3e-131 421.8 129.9 4 17 8.4e-13 8.4e-10 38.6 0.7 1 25 138 162 138 163 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF283-203 - 540 5.3e-131 421.8 129.9 5 17 4.8e-09 4.8e-06 26.8 2.4 1 24 166 189 166 190 0.97 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF283-203 - 540 5.3e-131 421.8 129.9 6 17 2.7e-11 2.7e-08 33.9 0.6 2 25 195 218 194 219 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF283-203 - 540 5.3e-131 421.8 129.9 7 17 8.6e-11 8.5e-08 32.3 0.8 2 24 223 245 222 245 0.97 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF283-203 - 540 5.3e-131 421.8 129.9 8 17 7.3e-12 7.3e-09 35.7 2.1 2 25 251 274 250 275 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF283-203 - 540 5.3e-131 421.8 129.9 9 17 5.8e-12 5.7e-09 36.0 0.3 2 25 279 302 278 303 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF283-203 - 540 5.3e-131 421.8 129.9 10 17 7.5e-12 7.5e-09 35.6 1.6 1 25 306 330 306 330 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF283-203 - 540 5.3e-131 421.8 129.9 11 17 2e-10 2e-07 31.1 2.0 1 24 334 357 334 357 0.97 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF283-203 - 540 5.3e-131 421.8 129.9 12 17 4.8e-11 4.8e-08 33.1 2.4 2 25 363 386 362 387 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF283-203 - 540 5.3e-131 421.8 129.9 13 17 1.5e-12 1.5e-09 37.9 0.3 1 25 390 414 390 415 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF283-203 - 540 5.3e-131 421.8 129.9 14 17 3.2e-11 3.2e-08 33.6 2.5 1 25 418 442 418 442 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF283-203 - 540 5.3e-131 421.8 129.9 15 17 7.5e-11 7.5e-08 32.5 0.4 1 25 446 470 446 471 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF283-203 - 540 5.3e-131 421.8 129.9 16 17 0.00044 0.44 11.1 0.2 2 16 475 489 474 499 0.85 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF283-203 - 540 5.3e-131 421.8 129.9 17 17 9.4e-05 0.093 13.2 0.1 5 24 505 524 504 525 0.95 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZNF283-203 - 540 4.4e-61 200.1 113.7 1 17 1.1 1.1e+03 0.4 0.2 9 23 48 62 47 62 0.91 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF283-203 - 540 4.4e-61 200.1 113.7 2 17 4.6e-06 0.0046 17.3 2.5 1 23 68 90 68 90 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF283-203 - 540 4.4e-61 200.1 113.7 3 17 1.4e-05 0.014 15.8 0.7 1 23 96 118 96 118 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF283-203 - 540 4.4e-61 200.1 113.7 4 17 4e-06 0.004 17.5 0.2 1 23 124 146 124 146 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF283-203 - 540 4.4e-61 200.1 113.7 5 17 2.4e-08 2.4e-05 24.5 1.6 1 23 152 174 152 174 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF283-203 - 540 4.4e-61 200.1 113.7 6 17 0.00029 0.28 11.7 0.1 1 23 180 202 180 202 0.89 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF283-203 - 540 4.4e-61 200.1 113.7 7 17 1.5e-08 1.5e-05 25.2 0.9 1 23 208 230 208 230 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF283-203 - 540 4.4e-61 200.1 113.7 8 17 6.1e-05 0.06 13.8 1.3 1 23 236 258 236 258 0.95 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF283-203 - 540 4.4e-61 200.1 113.7 9 17 4.7e-05 0.047 14.2 0.5 1 23 264 286 264 286 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF283-203 - 540 4.4e-61 200.1 113.7 10 17 6.7e-08 6.6e-05 23.1 1.5 1 23 292 314 292 314 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF283-203 - 540 4.4e-61 200.1 113.7 11 17 1e-05 0.01 16.2 0.1 1 23 320 342 320 342 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF283-203 - 540 4.4e-61 200.1 113.7 12 17 1.2e-05 0.012 16.0 4.5 1 23 348 370 348 370 0.92 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF283-203 - 540 4.4e-61 200.1 113.7 13 17 3.8e-05 0.038 14.4 0.6 1 23 376 398 376 398 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF283-203 - 540 4.4e-61 200.1 113.7 14 17 2.4e-08 2.4e-05 24.5 1.6 1 23 404 426 404 426 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF283-203 - 540 4.4e-61 200.1 113.7 15 17 5e-06 0.005 17.2 0.2 1 23 432 454 432 454 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF283-203 - 540 4.4e-61 200.1 113.7 16 17 4.2e-07 0.00042 20.6 0.3 1 23 460 482 460 482 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF283-203 - 540 4.4e-61 200.1 113.7 17 17 4.3 4.2e+03 -1.4 0.1 8 23 495 509 494 509 0.74 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZNF283-203 - 540 3.4e-41 136.3 119.8 1 16 0.0024 2.4 9.2 2.7 1 23 68 90 68 91 0.90 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF283-203 - 540 3.4e-41 136.3 119.8 2 16 1.5e-05 0.015 16.1 0.7 1 23 96 118 96 119 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF283-203 - 540 3.4e-41 136.3 119.8 3 16 5.4e-05 0.054 14.4 0.4 1 23 124 146 124 147 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF283-203 - 540 3.4e-41 136.3 119.8 4 16 1.5e-05 0.015 16.1 1.3 1 23 152 174 152 175 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF283-203 - 540 3.4e-41 136.3 119.8 5 16 0.0043 4.3 8.4 0.3 1 23 180 202 180 203 0.85 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF283-203 - 540 3.4e-41 136.3 119.8 6 16 4.9e-06 0.0049 17.6 0.8 1 23 208 230 208 231 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF283-203 - 540 3.4e-41 136.3 119.8 7 16 0.0008 0.79 10.7 1.7 1 23 236 258 236 259 0.88 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF283-203 - 540 3.4e-41 136.3 119.8 8 16 1.4e-05 0.013 16.2 0.7 1 23 264 286 264 287 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF283-203 - 540 3.4e-41 136.3 119.8 9 16 7e-06 0.007 17.1 1.4 1 23 292 314 292 315 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF283-203 - 540 3.4e-41 136.3 119.8 10 16 0.00017 0.17 12.8 0.3 1 23 320 342 320 343 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF283-203 - 540 3.4e-41 136.3 119.8 11 16 8.2e-05 0.082 13.8 4.1 1 23 348 370 348 371 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF283-203 - 540 3.4e-41 136.3 119.8 12 16 1.7e-05 0.017 15.9 0.9 1 23 376 398 376 399 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF283-203 - 540 3.4e-41 136.3 119.8 13 16 1.5e-05 0.015 16.1 1.3 1 23 404 426 404 427 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF283-203 - 540 3.4e-41 136.3 119.8 14 16 0.00011 0.11 13.4 0.5 1 23 432 454 432 455 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF283-203 - 540 3.4e-41 136.3 119.8 15 16 2.2e-05 0.022 15.6 0.4 1 23 460 482 460 483 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF283-203 - 540 3.4e-41 136.3 119.8 16 16 0.51 5.1e+02 2.0 0.1 7 23 494 509 494 510 0.79 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF283-203 - 540 2.8e-35 119.6 131.2 1 15 0.059 59 3.8 2.4 2 10 68 76 67 93 0.78 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF283-203 - 540 2.8e-35 119.6 131.2 2 15 0.00092 0.91 9.6 2.3 1 22 95 116 95 120 0.86 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF283-203 - 540 2.8e-35 119.6 131.2 3 15 7.4e-06 0.0073 16.3 0.7 2 22 124 144 124 148 0.89 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF283-203 - 540 2.8e-35 119.6 131.2 4 15 3.9e-06 0.0038 17.2 3.0 2 24 152 174 152 176 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF283-203 - 540 2.8e-35 119.6 131.2 5 15 0.00065 0.65 10.1 0.5 2 11 180 189 179 202 0.79 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF283-203 - 540 2.8e-35 119.6 131.2 6 15 2.8e-06 0.0028 17.6 2.7 2 24 208 230 208 233 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF283-203 - 540 2.8e-35 119.6 131.2 7 15 0.0018 1.8 8.6 1.8 2 20 236 254 236 258 0.79 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF283-203 - 540 2.8e-35 119.6 131.2 8 15 2.2e-05 0.022 14.8 1.4 2 24 264 286 264 289 0.90 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF283-203 - 540 2.8e-35 119.6 131.2 9 15 1.6e-05 0.016 15.2 2.9 2 24 292 314 292 317 0.90 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF283-203 - 540 2.8e-35 119.6 131.2 10 15 2.8e-05 0.028 14.4 0.6 2 24 320 342 320 345 0.90 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF283-203 - 540 2.8e-35 119.6 131.2 11 15 1.8e-05 0.018 15.1 4.5 2 20 348 366 347 367 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF283-203 - 540 2.8e-35 119.6 131.2 12 15 0.00017 0.17 11.9 1.7 2 21 376 395 376 400 0.85 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF283-203 - 540 2.8e-35 119.6 131.2 13 15 2.8e-06 0.0028 17.6 2.8 2 24 404 426 404 429 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF283-203 - 540 2.8e-35 119.6 131.2 14 15 7.4e-05 0.074 13.1 1.0 2 22 432 452 432 455 0.89 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF283-203 - 540 2.8e-35 119.6 131.2 15 15 7.6e-05 0.076 13.0 1.2 2 20 460 478 459 484 0.86 C2H2-type zinc finger zf-C2H2_jaz PF12171.8 27 ZNF283-203 - 540 8e-20 70.6 71.1 1 15 0.011 11 6.4 2.0 2 24 68 90 67 95 0.91 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF283-203 - 540 8e-20 70.6 71.1 2 15 0.00016 0.16 12.3 0.7 2 22 96 116 95 116 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF283-203 - 540 8e-20 70.6 71.1 3 15 0.0017 1.7 9.0 0.0 2 22 124 144 123 144 0.87 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF283-203 - 540 8e-20 70.6 71.1 4 15 0.0016 1.6 9.1 0.3 2 22 152 172 151 172 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF283-203 - 540 8e-20 70.6 71.1 5 15 0.17 1.7e+02 2.7 0.2 2 11 180 189 179 199 0.87 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF283-203 - 540 8e-20 70.6 71.1 6 15 0.00021 0.21 12.0 0.2 2 22 208 228 207 228 0.95 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF283-203 - 540 8e-20 70.6 71.1 7 15 0.12 1.2e+02 3.1 0.4 2 11 236 245 235 245 0.89 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF283-203 - 540 8e-20 70.6 71.1 8 15 0.011 10 6.5 0.2 2 22 264 284 263 284 0.86 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF283-203 - 540 8e-20 70.6 71.1 9 15 0.0034 3.3 8.1 0.3 2 22 292 312 291 312 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF283-203 - 540 8e-20 70.6 71.1 10 15 0.0062 6.2 7.2 0.0 2 22 320 340 319 340 0.87 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF283-203 - 540 8e-20 70.6 71.1 11 15 0.0084 8.4 6.8 1.3 2 20 348 366 347 367 0.89 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF283-203 - 540 8e-20 70.6 71.1 12 15 0.0045 4.5 7.7 0.2 2 22 376 396 375 396 0.91 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF283-203 - 540 8e-20 70.6 71.1 13 15 0.0016 1.6 9.1 0.3 2 22 404 424 403 424 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF283-203 - 540 8e-20 70.6 71.1 14 15 0.0079 7.9 6.9 0.0 2 22 432 452 431 452 0.87 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF283-203 - 540 8e-20 70.6 71.1 15 15 0.0077 7.6 6.9 0.0 2 22 460 480 459 480 0.92 Zinc-finger double-stranded RNA-binding XPA_N PF01286.18 32 ZNF283-203 - 540 2.4e-13 49.9 71.5 1 16 0.16 1.6e+02 2.4 0.5 3 10 69 76 68 86 0.80 XPA protein N-terminal XPA_N PF01286.18 32 ZNF283-203 - 540 2.4e-13 49.9 71.5 2 16 0.024 23 5.1 0.1 3 15 97 109 96 114 0.85 XPA protein N-terminal XPA_N PF01286.18 32 ZNF283-203 - 540 2.4e-13 49.9 71.5 3 16 0.0076 7.5 6.7 0.1 3 11 125 133 123 140 0.91 XPA protein N-terminal XPA_N PF01286.18 32 ZNF283-203 - 540 2.4e-13 49.9 71.5 4 16 0.0031 3 7.9 0.1 3 15 153 165 151 170 0.83 XPA protein N-terminal XPA_N PF01286.18 32 ZNF283-203 - 540 2.4e-13 49.9 71.5 5 16 0.017 17 5.5 0.3 3 11 181 189 180 191 0.93 XPA protein N-terminal XPA_N PF01286.18 32 ZNF283-203 - 540 2.4e-13 49.9 71.5 6 16 0.0036 3.6 7.7 0.1 3 13 209 219 207 225 0.84 XPA protein N-terminal XPA_N PF01286.18 32 ZNF283-203 - 540 2.4e-13 49.9 71.5 7 16 0.19 1.9e+02 2.2 0.2 3 12 237 246 235 253 0.85 XPA protein N-terminal XPA_N PF01286.18 32 ZNF283-203 - 540 2.4e-13 49.9 71.5 8 16 0.012 12 6.0 0.6 3 11 265 273 263 282 0.86 XPA protein N-terminal XPA_N PF01286.18 32 ZNF283-203 - 540 2.4e-13 49.9 71.5 9 16 0.0037 3.6 7.7 0.1 3 15 293 305 291 310 0.83 XPA protein N-terminal XPA_N PF01286.18 32 ZNF283-203 - 540 2.4e-13 49.9 71.5 10 16 0.011 11 6.2 0.1 3 11 321 329 319 336 0.91 XPA protein N-terminal XPA_N PF01286.18 32 ZNF283-203 - 540 2.4e-13 49.9 71.5 11 16 0.002 2 8.5 0.8 3 15 349 361 347 367 0.85 XPA protein N-terminal XPA_N PF01286.18 32 ZNF283-203 - 540 2.4e-13 49.9 71.5 12 16 0.012 12 6.1 0.6 3 11 377 385 375 394 0.86 XPA protein N-terminal XPA_N PF01286.18 32 ZNF283-203 - 540 2.4e-13 49.9 71.5 13 16 0.0031 3 7.9 0.1 3 15 405 417 403 422 0.83 XPA protein N-terminal XPA_N PF01286.18 32 ZNF283-203 - 540 2.4e-13 49.9 71.5 14 16 0.0087 8.7 6.5 0.1 3 11 433 441 431 448 0.91 XPA protein N-terminal XPA_N PF01286.18 32 ZNF283-203 - 540 2.4e-13 49.9 71.5 15 16 0.014 14 5.8 0.1 3 14 461 472 460 477 0.85 XPA protein N-terminal XPA_N PF01286.18 32 ZNF283-203 - 540 2.4e-13 49.9 71.5 16 16 1.4 1.4e+03 -0.5 0.0 6 17 519 526 518 531 0.59 XPA protein N-terminal zf-C2H2_11 PF16622.5 29 ZNF283-203 - 540 4.8e-13 48.6 72.0 1 15 1.8 1.8e+03 -1.2 1.1 4 11 67 74 65 81 0.81 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF283-203 - 540 4.8e-13 48.6 72.0 2 15 0.0037 3.7 7.4 0.2 6 24 97 115 94 117 0.89 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF283-203 - 540 4.8e-13 48.6 72.0 3 15 0.001 1 9.2 0.0 6 26 125 145 122 146 0.93 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF283-203 - 540 4.8e-13 48.6 72.0 4 15 0.045 45 3.9 0.3 6 26 153 173 150 174 0.84 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF283-203 - 540 4.8e-13 48.6 72.0 5 15 0.0012 1.2 9.0 0.1 4 26 179 201 177 202 0.90 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF283-203 - 540 4.8e-13 48.6 72.0 6 15 0.0084 8.4 6.3 0.2 5 26 208 229 205 230 0.85 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF283-203 - 540 4.8e-13 48.6 72.0 7 15 0.45 4.5e+02 0.7 0.5 7 23 238 254 235 258 0.82 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF283-203 - 540 4.8e-13 48.6 72.0 8 15 0.025 25 4.7 0.3 6 26 265 285 262 286 0.90 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF283-203 - 540 4.8e-13 48.6 72.0 9 15 0.01 10 6.0 0.4 6 26 293 313 290 314 0.90 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF283-203 - 540 4.8e-13 48.6 72.0 10 15 0.0033 3.3 7.6 0.0 6 25 321 340 318 342 0.89 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF283-203 - 540 4.8e-13 48.6 72.0 11 15 0.00045 0.45 10.3 2.4 3 23 346 366 345 370 0.91 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF283-203 - 540 4.8e-13 48.6 72.0 12 15 0.018 18 5.2 0.2 6 26 377 397 374 398 0.91 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF283-203 - 540 4.8e-13 48.6 72.0 13 15 0.045 45 3.9 0.3 6 26 405 425 402 426 0.84 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF283-203 - 540 4.8e-13 48.6 72.0 14 15 0.00073 0.73 9.7 0.0 5 25 432 452 429 454 0.90 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF283-203 - 540 4.8e-13 48.6 72.0 15 15 0.0024 2.4 8.0 0.1 1 23 456 478 456 481 0.89 zinc-finger C2H2-type Zn-ribbon_8 PF09723.10 40 ZNF283-203 - 540 9.5e-12 44.8 99.1 1 15 0.029 29 4.9 0.8 19 34 59 75 53 84 0.65 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF283-203 - 540 9.5e-12 44.8 99.1 2 15 0.19 1.8e+02 2.3 7.8 6 35 68 104 66 106 0.70 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF283-203 - 540 9.5e-12 44.8 99.1 3 15 0.003 3 8.1 6.9 6 35 96 132 93 134 0.90 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF283-203 - 540 9.5e-12 44.8 99.1 4 15 1.2e-05 0.012 15.8 4.7 6 38 124 163 123 165 0.89 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF283-203 - 540 9.5e-12 44.8 99.1 5 15 0.00028 0.28 11.3 6.0 6 34 152 187 151 189 0.93 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF283-203 - 540 9.5e-12 44.8 99.1 6 15 0.0073 7.3 6.8 0.8 6 15 180 189 177 200 0.90 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF283-203 - 540 9.5e-12 44.8 99.1 7 15 6.2e-05 0.062 13.4 4.8 6 34 208 243 207 246 0.94 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF283-203 - 540 9.5e-12 44.8 99.1 8 15 0.0002 0.2 11.8 7.4 6 38 264 303 263 305 0.87 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF283-203 - 540 9.5e-12 44.8 99.1 9 15 6.3e-05 0.063 13.4 5.5 6 34 292 327 291 330 0.92 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF283-203 - 540 9.5e-12 44.8 99.1 10 15 0.002 2 8.6 6.2 6 34 320 355 319 359 0.85 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF283-203 - 540 9.5e-12 44.8 99.1 11 15 0.035 35 4.6 8.4 7 34 349 383 347 386 0.83 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF283-203 - 540 9.5e-12 44.8 99.1 12 15 0.0002 0.2 11.8 7.5 6 38 376 415 375 417 0.87 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF283-203 - 540 9.5e-12 44.8 99.1 13 15 3.6e-05 0.036 14.2 4.8 6 34 404 439 402 442 0.92 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF283-203 - 540 9.5e-12 44.8 99.1 14 15 0.0018 1.8 8.7 5.7 6 34 432 467 431 469 0.84 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF283-203 - 540 9.5e-12 44.8 99.1 15 15 0.0071 7.1 6.8 0.7 6 15 460 469 458 485 0.86 Zinc ribbon domain zf-trcl PF13451.6 48 ZNF283-203 - 540 8.4e-09 35.2 77.0 1 16 0.12 1.2e+02 2.7 1.3 3 12 66 75 64 78 0.86 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF283-203 - 540 8.4e-09 35.2 77.0 2 16 0.044 44 4.1 0.2 2 13 93 104 92 106 0.86 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF283-203 - 540 8.4e-09 35.2 77.0 3 16 0.0032 3.2 7.7 0.1 3 16 122 135 120 138 0.88 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF283-203 - 540 8.4e-09 35.2 77.0 4 16 0.039 39 4.3 0.1 3 14 150 161 148 162 0.87 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF283-203 - 540 8.4e-09 35.2 77.0 5 16 0.0026 2.6 8.0 0.2 3 17 178 192 178 198 0.87 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF283-203 - 540 8.4e-09 35.2 77.0 6 16 0.014 14 5.7 0.2 3 14 206 217 204 218 0.87 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF283-203 - 540 8.4e-09 35.2 77.0 7 16 0.043 42 4.1 0.4 3 16 234 247 233 251 0.89 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF283-203 - 540 8.4e-09 35.2 77.0 8 16 0.039 39 4.3 0.2 3 14 262 273 260 274 0.87 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF283-203 - 540 8.4e-09 35.2 77.0 9 16 0.039 39 4.3 0.1 3 14 290 301 288 302 0.87 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF283-203 - 540 8.4e-09 35.2 77.0 10 16 0.004 4 7.4 0.1 3 16 318 331 316 334 0.88 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF283-203 - 540 8.4e-09 35.2 77.0 11 16 0.4 4e+02 1.0 2.4 4 14 347 357 345 359 0.83 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF283-203 - 540 8.4e-09 35.2 77.0 12 16 0.039 39 4.3 0.2 3 14 374 385 372 386 0.87 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF283-203 - 540 8.4e-09 35.2 77.0 13 16 0.039 39 4.3 0.1 3 14 402 413 400 414 0.87 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF283-203 - 540 8.4e-09 35.2 77.0 14 16 0.0014 1.4 8.8 0.2 3 16 430 443 428 446 0.88 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF283-203 - 540 8.4e-09 35.2 77.0 15 16 0.015 15 5.6 0.3 3 14 458 469 456 470 0.87 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF283-203 - 540 8.4e-09 35.2 77.0 16 16 0.034 34 4.4 0.0 2 18 512 528 511 532 0.89 Probable zinc-ribbon domain zf_UBZ PF18439.1 32 ZNF283-203 - 540 1.1e-08 34.6 78.6 1 15 0.0059 5.8 6.6 1.0 2 17 67 83 66 87 0.74 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF283-203 - 540 1.1e-08 34.6 78.6 2 15 0.0017 1.7 8.3 0.4 2 24 95 118 94 119 0.86 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF283-203 - 540 1.1e-08 34.6 78.6 3 15 0.0086 8.5 6.1 0.1 3 13 124 134 122 142 0.90 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF283-203 - 540 1.1e-08 34.6 78.6 4 15 0.0067 6.7 6.4 0.3 3 20 152 170 150 171 0.80 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF283-203 - 540 1.1e-08 34.6 78.6 5 15 0.013 13 5.5 0.2 2 11 179 188 178 191 0.88 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF283-203 - 540 1.1e-08 34.6 78.6 6 15 0.00085 0.85 9.3 0.1 3 21 208 227 206 227 0.91 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF283-203 - 540 1.1e-08 34.6 78.6 7 15 0.31 3.1e+02 1.1 0.5 3 12 236 245 234 255 0.88 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF283-203 - 540 1.1e-08 34.6 78.6 8 15 0.017 17 5.1 0.8 3 20 264 282 262 283 0.77 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF283-203 - 540 1.1e-08 34.6 78.6 9 15 0.0093 9.3 5.9 0.3 3 15 292 304 290 311 0.76 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF283-203 - 540 1.1e-08 34.6 78.6 10 15 0.031 31 4.3 0.1 3 13 320 330 318 335 0.88 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF283-203 - 540 1.1e-08 34.6 78.6 11 15 0.043 43 3.8 1.7 2 21 347 367 346 370 0.76 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF283-203 - 540 1.1e-08 34.6 78.6 12 15 0.018 18 5.1 0.7 3 17 376 391 374 395 0.75 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF283-203 - 540 1.1e-08 34.6 78.6 13 15 0.0067 6.7 6.4 0.3 3 20 404 422 402 423 0.80 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF283-203 - 540 1.1e-08 34.6 78.6 14 15 0.022 22 4.8 0.1 3 13 432 442 430 447 0.88 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF283-203 - 540 1.1e-08 34.6 78.6 15 15 0.012 12 5.6 0.1 2 14 459 471 458 485 0.77 Ubiquitin-Binding Zinc Finger C1_4 PF07975.12 55 ZNF283-203 - 540 2.4e-07 30.9 72.9 1 13 0.8 8e+02 0.4 1.5 18 34 60 76 45 91 0.71 TFIIH C1-like domain C1_4 PF07975.12 55 ZNF283-203 - 540 2.4e-07 30.9 72.9 2 13 0.23 2.2e+02 2.1 6.2 2 49 70 119 69 122 0.76 TFIIH C1-like domain C1_4 PF07975.12 55 ZNF283-203 - 540 2.4e-07 30.9 72.9 3 13 0.0045 4.5 7.6 1.0 2 49 98 147 98 149 0.77 TFIIH C1-like domain C1_4 PF07975.12 55 ZNF283-203 - 540 2.4e-07 30.9 72.9 4 13 0.0005 0.49 10.7 1.5 1 49 153 203 153 205 0.85 TFIIH C1-like domain C1_4 PF07975.12 55 ZNF283-203 - 540 2.4e-07 30.9 72.9 5 13 0.00014 0.14 12.4 2.8 1 49 209 259 208 261 0.85 TFIIH C1-like domain C1_4 PF07975.12 55 ZNF283-203 - 540 2.4e-07 30.9 72.9 6 13 0.016 16 5.8 0.4 25 49 263 287 258 289 0.89 TFIIH C1-like domain C1_4 PF07975.12 55 ZNF283-203 - 540 2.4e-07 30.9 72.9 7 13 0.073 72 3.7 3.8 2 36 266 302 265 316 0.72 TFIIH C1-like domain C1_4 PF07975.12 55 ZNF283-203 - 540 2.4e-07 30.9 72.9 8 13 0.0013 1.3 9.4 1.3 1 49 293 343 293 345 0.84 TFIIH C1-like domain C1_4 PF07975.12 55 ZNF283-203 - 540 2.4e-07 30.9 72.9 9 13 0.0086 8.6 6.7 4.5 1 48 321 370 321 373 0.78 TFIIH C1-like domain C1_4 PF07975.12 55 ZNF283-203 - 540 2.4e-07 30.9 72.9 10 13 0.024 24 5.2 6.7 1 49 349 399 349 401 0.87 TFIIH C1-like domain C1_4 PF07975.12 55 ZNF283-203 - 540 2.4e-07 30.9 72.9 11 13 0.055 55 4.1 4.1 1 37 377 415 377 429 0.73 TFIIH C1-like domain C1_4 PF07975.12 55 ZNF283-203 - 540 2.4e-07 30.9 72.9 12 13 0.0018 1.8 8.8 1.9 1 49 405 455 405 457 0.86 TFIIH C1-like domain C1_4 PF07975.12 55 ZNF283-203 - 540 2.4e-07 30.9 72.9 13 13 0.0016 1.6 9.0 1.5 2 49 434 483 433 485 0.82 TFIIH C1-like domain # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF283-203.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF283-203.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF283-203.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF283-203.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF283-203.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:03:20 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF283-204.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF283-204.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF283-204.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF283-204.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF283-204.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:03:21 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- KRAB PF01352.27 42 ZNF283-205 - 79 8e-16 57.4 0.4 1 1 6.9e-20 1.2e-15 56.8 0.4 1 30 47 76 47 77 0.94 KRAB box # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF283-205.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF283-205.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF283-205.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF283-205.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF283-205.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:03:21 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF283-206.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF283-206.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF283-206.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF283-206.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF283-206.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:03:21 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- KRAB PF01352.27 42 ZNF283-207 - 94 5.9e-28 96.2 0.3 1 1 4.6e-32 8.3e-28 95.8 0.3 1 42 47 88 47 88 0.99 KRAB box # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF283-207.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF283-207.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF283-207.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF283-207.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF283-207.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:03:22 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF283-208.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF283-208.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF283-208.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF283-208.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF283-208.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:03:22 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZNF283-209 - 612 6.2e-130 418.4 129.9 1 17 4.9e-05 0.052 14.0 3.2 5 26 130 151 126 151 0.90 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF283-209 - 612 6.2e-130 418.4 129.9 2 17 6.5e-08 6.8e-05 23.1 2.4 2 25 155 178 154 179 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF283-209 - 612 6.2e-130 418.4 129.9 3 17 8.7e-12 9.2e-09 35.3 1.1 2 25 183 206 182 206 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF283-209 - 612 6.2e-130 418.4 129.9 4 17 9.2e-13 9.7e-10 38.4 0.7 1 25 210 234 210 235 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF283-209 - 612 6.2e-130 418.4 129.9 5 17 5.3e-09 5.6e-06 26.6 2.4 1 24 238 261 238 262 0.97 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF283-209 - 612 6.2e-130 418.4 129.9 6 17 2.9e-11 3.1e-08 33.7 0.6 2 25 267 290 266 291 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF283-209 - 612 6.2e-130 418.4 129.9 7 17 9.4e-11 9.9e-08 32.1 0.8 2 24 295 317 294 317 0.97 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF283-209 - 612 6.2e-130 418.4 129.9 8 17 8.1e-12 8.5e-09 35.5 2.1 2 25 323 346 322 347 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF283-209 - 612 6.2e-130 418.4 129.9 9 17 6.3e-12 6.6e-09 35.8 0.3 2 25 351 374 350 375 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF283-209 - 612 6.2e-130 418.4 129.9 10 17 8.2e-12 8.7e-09 35.4 1.6 1 25 378 402 378 402 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF283-209 - 612 6.2e-130 418.4 129.9 11 17 2.2e-10 2.4e-07 30.9 2.0 1 24 406 429 406 429 0.97 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF283-209 - 612 6.2e-130 418.4 129.9 12 17 5.3e-11 5.5e-08 32.9 2.4 2 25 435 458 434 459 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF283-209 - 612 6.2e-130 418.4 129.9 13 17 1.6e-12 1.7e-09 37.7 0.3 1 25 462 486 462 487 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF283-209 - 612 6.2e-130 418.4 129.9 14 17 3.5e-11 3.7e-08 33.4 2.5 1 25 490 514 490 514 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF283-209 - 612 6.2e-130 418.4 129.9 15 17 8.2e-11 8.7e-08 32.3 0.4 1 25 518 542 518 543 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF283-209 - 612 6.2e-130 418.4 129.9 16 17 0.00048 0.51 10.9 0.2 2 16 547 561 546 571 0.85 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF283-209 - 612 6.2e-130 418.4 129.9 17 17 0.0001 0.11 13.0 0.1 5 24 577 596 576 597 0.95 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZNF283-209 - 612 4.6e-60 196.9 113.7 1 17 1.2 1.2e+03 0.2 0.2 9 23 120 134 119 134 0.91 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF283-209 - 612 4.6e-60 196.9 113.7 2 17 5.1e-06 0.0053 17.1 2.5 1 23 140 162 140 162 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF283-209 - 612 4.6e-60 196.9 113.7 3 17 1.5e-05 0.016 15.6 0.7 1 23 168 190 168 190 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF283-209 - 612 4.6e-60 196.9 113.7 4 17 4.4e-06 0.0046 17.3 0.2 1 23 196 218 196 218 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF283-209 - 612 4.6e-60 196.9 113.7 5 17 2.7e-08 2.8e-05 24.3 1.6 1 23 224 246 224 246 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF283-209 - 612 4.6e-60 196.9 113.7 6 17 0.00031 0.33 11.5 0.1 1 23 252 274 252 274 0.89 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF283-209 - 612 4.6e-60 196.9 113.7 7 17 1.7e-08 1.8e-05 25.0 0.9 1 23 280 302 280 302 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF283-209 - 612 4.6e-60 196.9 113.7 8 17 6.6e-05 0.07 13.6 1.3 1 23 308 330 308 330 0.95 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF283-209 - 612 4.6e-60 196.9 113.7 9 17 5.2e-05 0.055 14.0 0.5 1 23 336 358 336 358 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF283-209 - 612 4.6e-60 196.9 113.7 10 17 7.3e-08 7.7e-05 22.9 1.5 1 23 364 386 364 386 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF283-209 - 612 4.6e-60 196.9 113.7 11 17 1.1e-05 0.012 16.0 0.1 1 23 392 414 392 414 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF283-209 - 612 4.6e-60 196.9 113.7 12 17 1.3e-05 0.014 15.8 4.5 1 23 420 442 420 442 0.92 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF283-209 - 612 4.6e-60 196.9 113.7 13 17 4.2e-05 0.044 14.2 0.6 1 23 448 470 448 470 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF283-209 - 612 4.6e-60 196.9 113.7 14 17 2.7e-08 2.8e-05 24.3 1.6 1 23 476 498 476 498 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF283-209 - 612 4.6e-60 196.9 113.7 15 17 5.5e-06 0.0058 17.0 0.2 1 23 504 526 504 526 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF283-209 - 612 4.6e-60 196.9 113.7 16 17 4.6e-07 0.00049 20.4 0.3 1 23 532 554 532 554 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF283-209 - 612 4.6e-60 196.9 113.7 17 17 4.6 4.9e+03 -1.6 0.1 8 23 567 581 566 581 0.74 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZNF283-209 - 612 1e-41 138.0 115.0 1 16 0.0026 2.8 9.0 2.7 1 23 140 162 140 163 0.90 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF283-209 - 612 1e-41 138.0 115.0 2 16 1.7e-05 0.018 15.9 0.7 1 23 168 190 168 191 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF283-209 - 612 1e-41 138.0 115.0 3 16 5.9e-05 0.062 14.2 0.4 1 23 196 218 196 219 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF283-209 - 612 1e-41 138.0 115.0 4 16 1.6e-05 0.017 15.9 1.3 1 23 224 246 224 247 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF283-209 - 612 1e-41 138.0 115.0 5 16 0.0047 5 8.2 0.3 1 23 252 274 252 275 0.85 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF283-209 - 612 1e-41 138.0 115.0 6 16 5.4e-06 0.0057 17.4 0.8 1 23 280 302 280 303 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF283-209 - 612 1e-41 138.0 115.0 7 16 0.00087 0.92 10.5 1.7 1 23 308 330 308 331 0.88 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF283-209 - 612 1e-41 138.0 115.0 8 16 1.5e-05 0.016 16.0 0.7 1 23 336 358 336 359 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF283-209 - 612 1e-41 138.0 115.0 9 16 7.7e-06 0.0081 16.9 1.4 1 23 364 386 364 387 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF283-209 - 612 1e-41 138.0 115.0 10 16 0.00019 0.2 12.6 0.3 1 23 392 414 392 415 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF283-209 - 612 1e-41 138.0 115.0 11 16 9e-05 0.095 13.6 4.1 1 23 420 442 420 443 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF283-209 - 612 1e-41 138.0 115.0 12 16 1.9e-05 0.02 15.7 0.9 1 23 448 470 448 471 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF283-209 - 612 1e-41 138.0 115.0 13 16 1.6e-05 0.017 15.9 1.3 1 23 476 498 476 499 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF283-209 - 612 1e-41 138.0 115.0 14 16 0.00012 0.12 13.2 0.5 1 23 504 526 504 527 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF283-209 - 612 1e-41 138.0 115.0 15 16 2.4e-05 0.026 15.4 0.4 1 23 532 554 532 555 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF283-209 - 612 1e-41 138.0 115.0 16 16 0.56 5.9e+02 1.8 0.1 7 23 566 581 566 582 0.79 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF283-209 - 612 2.4e-34 116.7 131.2 1 15 0.065 68 3.6 2.4 2 10 140 148 139 165 0.78 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF283-209 - 612 2.4e-34 116.7 131.2 2 15 0.001 1.1 9.4 2.3 1 22 167 188 167 192 0.86 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF283-209 - 612 2.4e-34 116.7 131.2 3 15 8e-06 0.0085 16.1 0.7 2 22 196 216 196 220 0.89 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF283-209 - 612 2.4e-34 116.7 131.2 4 15 4.2e-06 0.0044 17.0 3.0 2 24 224 246 224 248 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF283-209 - 612 2.4e-34 116.7 131.2 5 15 0.00071 0.75 9.9 0.5 2 11 252 261 251 274 0.79 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF283-209 - 612 2.4e-34 116.7 131.2 6 15 3.1e-06 0.0033 17.4 2.7 2 24 280 302 280 305 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF283-209 - 612 2.4e-34 116.7 131.2 7 15 0.002 2.1 8.4 1.8 2 20 308 326 308 330 0.79 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF283-209 - 612 2.4e-34 116.7 131.2 8 15 2.4e-05 0.026 14.5 1.4 2 24 336 358 336 361 0.90 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF283-209 - 612 2.4e-34 116.7 131.2 9 15 1.8e-05 0.019 15.0 2.9 2 24 364 386 364 389 0.90 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF283-209 - 612 2.4e-34 116.7 131.2 10 15 3.1e-05 0.033 14.2 0.6 2 24 392 414 392 417 0.90 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF283-209 - 612 2.4e-34 116.7 131.2 11 15 1.9e-05 0.02 14.9 4.5 2 20 420 438 419 439 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF283-209 - 612 2.4e-34 116.7 131.2 12 15 0.00019 0.2 11.7 1.7 2 21 448 467 448 472 0.85 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF283-209 - 612 2.4e-34 116.7 131.2 13 15 3.1e-06 0.0032 17.4 2.8 2 24 476 498 476 501 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF283-209 - 612 2.4e-34 116.7 131.2 14 15 8.1e-05 0.085 12.9 1.0 2 22 504 524 504 527 0.89 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF283-209 - 612 2.4e-34 116.7 131.2 15 15 8.3e-05 0.088 12.8 1.2 2 20 532 550 531 556 0.86 C2H2-type zinc finger KRAB PF01352.27 42 ZNF283-209 - 612 7.8e-27 92.7 0.3 1 1 1.7e-29 1.8e-26 91.5 0.3 1 42 5 46 5 46 0.99 KRAB box zf-C2H2_jaz PF12171.8 27 ZNF283-209 - 612 6.5e-19 67.7 71.1 1 15 0.013 13 6.2 2.0 2 24 140 162 139 167 0.91 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF283-209 - 612 6.5e-19 67.7 71.1 2 15 0.00018 0.18 12.1 0.7 2 22 168 188 167 188 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF283-209 - 612 6.5e-19 67.7 71.1 3 15 0.0018 1.9 8.8 0.0 2 22 196 216 195 216 0.87 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF283-209 - 612 6.5e-19 67.7 71.1 4 15 0.0018 1.9 8.9 0.3 2 22 224 244 223 244 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF283-209 - 612 6.5e-19 67.7 71.1 5 15 0.18 1.9e+02 2.5 0.2 2 11 252 261 251 271 0.87 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF283-209 - 612 6.5e-19 67.7 71.1 6 15 0.00022 0.24 11.8 0.2 2 22 280 300 279 300 0.95 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF283-209 - 612 6.5e-19 67.7 71.1 7 15 0.13 1.4e+02 2.9 0.4 2 11 308 317 307 317 0.89 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF283-209 - 612 6.5e-19 67.7 71.1 8 15 0.011 12 6.3 0.2 2 22 336 356 335 356 0.86 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF283-209 - 612 6.5e-19 67.7 71.1 9 15 0.0037 3.9 7.9 0.3 2 22 364 384 363 384 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF283-209 - 612 6.5e-19 67.7 71.1 10 15 0.0068 7.2 7.0 0.0 2 22 392 412 391 412 0.87 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF283-209 - 612 6.5e-19 67.7 71.1 11 15 0.0092 9.7 6.6 1.3 2 20 420 438 419 439 0.89 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF283-209 - 612 6.5e-19 67.7 71.1 12 15 0.0049 5.2 7.5 0.2 2 22 448 468 447 468 0.91 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF283-209 - 612 6.5e-19 67.7 71.1 13 15 0.0018 1.9 8.9 0.3 2 22 476 496 475 496 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF283-209 - 612 6.5e-19 67.7 71.1 14 15 0.0086 9.1 6.7 0.0 2 22 504 524 503 524 0.87 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF283-209 - 612 6.5e-19 67.7 71.1 15 15 0.0084 8.8 6.7 0.0 2 22 532 552 531 552 0.92 Zinc-finger double-stranded RNA-binding XPA_N PF01286.18 32 ZNF283-209 - 612 2e-12 46.9 71.5 1 16 0.17 1.8e+02 2.3 0.5 3 10 141 148 140 158 0.80 XPA protein N-terminal XPA_N PF01286.18 32 ZNF283-209 - 612 2e-12 46.9 71.5 2 16 0.026 27 4.9 0.1 3 15 169 181 168 186 0.85 XPA protein N-terminal XPA_N PF01286.18 32 ZNF283-209 - 612 2e-12 46.9 71.5 3 16 0.0082 8.6 6.5 0.1 3 11 197 205 195 212 0.91 XPA protein N-terminal XPA_N PF01286.18 32 ZNF283-209 - 612 2e-12 46.9 71.5 4 16 0.0033 3.5 7.7 0.1 3 15 225 237 223 242 0.83 XPA protein N-terminal XPA_N PF01286.18 32 ZNF283-209 - 612 2e-12 46.9 71.5 5 16 0.019 20 5.4 0.3 3 11 253 261 252 263 0.93 XPA protein N-terminal XPA_N PF01286.18 32 ZNF283-209 - 612 2e-12 46.9 71.5 6 16 0.004 4.2 7.5 0.1 3 13 281 291 279 297 0.84 XPA protein N-terminal XPA_N PF01286.18 32 ZNF283-209 - 612 2e-12 46.9 71.5 7 16 0.21 2.2e+02 2.0 0.2 3 12 309 318 307 325 0.85 XPA protein N-terminal XPA_N PF01286.18 32 ZNF283-209 - 612 2e-12 46.9 71.5 8 16 0.013 14 5.8 0.6 3 11 337 345 335 354 0.86 XPA protein N-terminal XPA_N PF01286.18 32 ZNF283-209 - 612 2e-12 46.9 71.5 9 16 0.004 4.2 7.5 0.1 3 15 365 377 363 382 0.83 XPA protein N-terminal XPA_N PF01286.18 32 ZNF283-209 - 612 2e-12 46.9 71.5 10 16 0.012 12 6.0 0.1 3 11 393 401 391 408 0.91 XPA protein N-terminal XPA_N PF01286.18 32 ZNF283-209 - 612 2e-12 46.9 71.5 11 16 0.0022 2.3 8.3 0.8 3 15 421 433 419 439 0.85 XPA protein N-terminal XPA_N PF01286.18 32 ZNF283-209 - 612 2e-12 46.9 71.5 12 16 0.013 13 5.9 0.6 3 11 449 457 447 466 0.86 XPA protein N-terminal XPA_N PF01286.18 32 ZNF283-209 - 612 2e-12 46.9 71.5 13 16 0.0033 3.5 7.7 0.1 3 15 477 489 475 494 0.83 XPA protein N-terminal XPA_N PF01286.18 32 ZNF283-209 - 612 2e-12 46.9 71.5 14 16 0.0095 10 6.3 0.1 3 11 505 513 503 520 0.91 XPA protein N-terminal XPA_N PF01286.18 32 ZNF283-209 - 612 2e-12 46.9 71.5 15 16 0.015 16 5.6 0.1 3 14 533 544 532 549 0.85 XPA protein N-terminal XPA_N PF01286.18 32 ZNF283-209 - 612 2e-12 46.9 71.5 16 16 1.5 1.6e+03 -0.7 0.0 6 17 591 598 590 603 0.59 XPA protein N-terminal zf-C2H2_11 PF16622.5 29 ZNF283-209 - 612 3.9e-12 45.7 72.1 1 15 2 2.1e+03 -1.4 1.1 4 11 139 146 137 153 0.81 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF283-209 - 612 3.9e-12 45.7 72.1 2 15 0.0041 4.4 7.2 0.2 7 24 170 187 167 189 0.89 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF283-209 - 612 3.9e-12 45.7 72.1 3 15 0.0011 1.2 9.0 0.0 6 26 197 217 194 218 0.93 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF283-209 - 612 3.9e-12 45.7 72.1 4 15 0.049 52 3.7 0.3 6 26 225 245 222 246 0.84 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF283-209 - 612 3.9e-12 45.7 72.1 5 15 0.0013 1.4 8.8 0.1 4 26 251 273 249 274 0.90 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF283-209 - 612 3.9e-12 45.7 72.1 6 15 0.0092 9.7 6.1 0.2 5 26 280 301 277 302 0.85 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF283-209 - 612 3.9e-12 45.7 72.1 7 15 0.49 5.2e+02 0.5 0.5 7 23 310 326 307 330 0.82 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF283-209 - 612 3.9e-12 45.7 72.1 8 15 0.027 29 4.5 0.3 6 26 337 357 334 358 0.90 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF283-209 - 612 3.9e-12 45.7 72.1 9 15 0.011 12 5.8 0.4 6 26 365 385 362 386 0.90 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF283-209 - 612 3.9e-12 45.7 72.1 10 15 0.0036 3.8 7.4 0.0 6 25 393 412 390 414 0.89 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF283-209 - 612 3.9e-12 45.7 72.1 11 15 0.0005 0.52 10.1 2.4 3 23 418 438 417 442 0.91 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF283-209 - 612 3.9e-12 45.7 72.1 12 15 0.019 21 5.0 0.2 6 26 449 469 446 470 0.91 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF283-209 - 612 3.9e-12 45.7 72.1 13 15 0.049 52 3.7 0.3 6 26 477 497 474 498 0.84 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF283-209 - 612 3.9e-12 45.7 72.1 14 15 0.0008 0.84 9.5 0.0 5 25 504 524 501 526 0.90 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF283-209 - 612 3.9e-12 45.7 72.1 15 15 0.0027 2.8 7.8 0.1 1 23 528 550 528 553 0.89 zinc-finger C2H2-type Zn-ribbon_8 PF09723.10 40 ZNF283-209 - 612 3.7e-11 42.9 98.9 1 15 0.034 36 4.6 0.9 19 34 131 147 125 155 0.65 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF283-209 - 612 3.7e-11 42.9 98.9 2 15 0.15 1.6e+02 2.5 7.6 6 35 140 176 138 180 0.71 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF283-209 - 612 3.7e-11 42.9 98.9 3 15 0.0023 2.4 8.3 6.4 6 34 168 203 166 206 0.90 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF283-209 - 612 3.7e-11 42.9 98.9 4 15 1.5e-05 0.016 15.3 4.9 6 38 196 235 195 237 0.89 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF283-209 - 612 3.7e-11 42.9 98.9 5 15 0.00032 0.34 11.1 6.1 6 34 224 259 223 262 0.93 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF283-209 - 612 3.7e-11 42.9 98.9 6 15 0.0081 8.5 6.6 0.8 6 15 252 261 249 271 0.90 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF283-209 - 612 3.7e-11 42.9 98.9 7 15 6.8e-05 0.072 13.2 4.8 6 34 280 315 279 318 0.94 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF283-209 - 612 3.7e-11 42.9 98.9 8 15 0.00022 0.23 11.6 7.4 6 38 336 375 335 377 0.87 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF283-209 - 612 3.7e-11 42.9 98.9 9 15 7.5e-05 0.079 13.1 5.6 6 34 364 399 363 402 0.92 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF283-209 - 612 3.7e-11 42.9 98.9 10 15 0.002 2.2 8.5 6.1 6 34 392 427 391 431 0.85 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF283-209 - 612 3.7e-11 42.9 98.9 11 15 0.033 35 4.6 8.2 7 34 421 455 419 458 0.83 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF283-209 - 612 3.7e-11 42.9 98.9 12 15 0.00025 0.26 11.4 7.7 6 38 448 487 447 489 0.87 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF283-209 - 612 3.7e-11 42.9 98.9 13 15 3.6e-05 0.038 14.1 4.6 6 34 476 511 475 514 0.92 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF283-209 - 612 3.7e-11 42.9 98.9 14 15 0.0015 1.5 9.0 5.4 6 34 504 539 502 543 0.85 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF283-209 - 612 3.7e-11 42.9 98.9 15 15 0.008 8.4 6.6 0.7 6 15 532 541 530 556 0.87 Zinc ribbon domain zf_UBZ PF18439.1 32 ZNF283-209 - 612 6.8e-08 32.0 78.3 1 15 0.0064 6.7 6.4 1.0 2 16 139 154 138 159 0.74 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF283-209 - 612 6.8e-08 32.0 78.3 2 15 0.0018 1.9 8.1 0.4 2 24 167 190 166 191 0.86 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF283-209 - 612 6.8e-08 32.0 78.3 3 15 0.0093 9.8 5.9 0.1 3 13 196 206 194 214 0.90 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF283-209 - 612 6.8e-08 32.0 78.3 4 15 0.0073 7.7 6.2 0.3 3 20 224 242 222 243 0.80 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF283-209 - 612 6.8e-08 32.0 78.3 5 15 0.014 15 5.3 0.2 2 11 251 260 250 263 0.88 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF283-209 - 612 6.8e-08 32.0 78.3 6 15 0.00093 0.98 9.1 0.1 3 21 280 299 278 299 0.91 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF283-209 - 612 6.8e-08 32.0 78.3 7 15 0.34 3.6e+02 0.9 0.5 3 12 308 317 306 327 0.88 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF283-209 - 612 6.8e-08 32.0 78.3 8 15 0.018 19 4.9 0.8 3 20 336 354 334 355 0.77 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF283-209 - 612 6.8e-08 32.0 78.3 9 15 0.01 11 5.7 0.3 3 15 364 376 362 383 0.76 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF283-209 - 612 6.8e-08 32.0 78.3 10 15 0.034 36 4.1 0.1 3 13 392 402 390 407 0.88 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF283-209 - 612 6.8e-08 32.0 78.3 11 15 0.047 49 3.6 1.7 2 21 419 439 418 442 0.76 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF283-209 - 612 6.8e-08 32.0 78.3 12 15 0.019 20 4.9 0.7 3 17 448 463 446 467 0.75 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF283-209 - 612 6.8e-08 32.0 78.3 13 15 0.0073 7.7 6.2 0.3 3 20 476 494 474 495 0.80 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF283-209 - 612 6.8e-08 32.0 78.3 14 15 0.024 25 4.6 0.1 3 13 504 514 502 519 0.88 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF283-209 - 612 6.8e-08 32.0 78.3 15 15 0.013 14 5.4 0.1 2 14 531 543 530 556 0.76 Ubiquitin-Binding Zinc Finger zf-trcl PF13451.6 48 ZNF283-209 - 612 7.2e-08 32.2 77.0 1 16 0.13 1.3e+02 2.5 1.3 3 12 138 147 136 150 0.86 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF283-209 - 612 7.2e-08 32.2 77.0 2 16 0.048 50 3.9 0.2 2 13 165 176 164 178 0.86 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF283-209 - 612 7.2e-08 32.2 77.0 3 16 0.0035 3.7 7.5 0.1 3 16 194 207 192 210 0.88 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF283-209 - 612 7.2e-08 32.2 77.0 4 16 0.042 44 4.1 0.1 3 14 222 233 220 234 0.87 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF283-209 - 612 7.2e-08 32.2 77.0 5 16 0.0029 3 7.8 0.2 3 17 250 264 250 270 0.87 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF283-209 - 612 7.2e-08 32.2 77.0 6 16 0.015 16 5.5 0.2 3 14 278 289 276 290 0.87 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF283-209 - 612 7.2e-08 32.2 77.0 7 16 0.046 49 3.9 0.4 3 16 306 319 305 323 0.89 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF283-209 - 612 7.2e-08 32.2 77.0 8 16 0.042 44 4.1 0.2 3 14 334 345 332 346 0.87 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF283-209 - 612 7.2e-08 32.2 77.0 9 16 0.042 44 4.1 0.1 3 14 362 373 360 374 0.87 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF283-209 - 612 7.2e-08 32.2 77.0 10 16 0.0044 4.6 7.2 0.1 3 16 390 403 388 406 0.88 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF283-209 - 612 7.2e-08 32.2 77.0 11 16 0.43 4.6e+02 0.8 2.4 4 14 419 429 417 431 0.83 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF283-209 - 612 7.2e-08 32.2 77.0 12 16 0.042 44 4.1 0.2 3 14 446 457 444 458 0.87 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF283-209 - 612 7.2e-08 32.2 77.0 13 16 0.042 44 4.1 0.1 3 14 474 485 472 486 0.87 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF283-209 - 612 7.2e-08 32.2 77.0 14 16 0.0016 1.6 8.6 0.2 3 16 502 515 500 518 0.88 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF283-209 - 612 7.2e-08 32.2 77.0 15 16 0.016 17 5.4 0.3 3 14 530 541 528 542 0.87 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF283-209 - 612 7.2e-08 32.2 77.0 16 16 0.037 39 4.2 0.0 2 18 584 600 583 604 0.89 Probable zinc-ribbon domain C1_4 PF07975.12 55 ZNF283-209 - 612 8.9e-07 29.1 72.5 1 13 0.8 8.4e+02 0.3 1.3 18 34 132 148 118 163 0.72 TFIIH C1-like domain C1_4 PF07975.12 55 ZNF283-209 - 612 8.9e-07 29.1 72.5 2 13 0.24 2.6e+02 2.0 6.1 2 49 142 191 141 194 0.76 TFIIH C1-like domain C1_4 PF07975.12 55 ZNF283-209 - 612 8.9e-07 29.1 72.5 3 13 0.02 22 5.4 0.0 25 49 195 219 191 221 0.89 TFIIH C1-like domain C1_4 PF07975.12 55 ZNF283-209 - 612 8.9e-07 29.1 72.5 4 13 0.00072 0.76 10.1 1.9 1 49 225 275 225 277 0.85 TFIIH C1-like domain C1_4 PF07975.12 55 ZNF283-209 - 612 8.9e-07 29.1 72.5 5 13 0.00016 0.17 12.1 2.9 1 49 281 331 281 333 0.85 TFIIH C1-like domain C1_4 PF07975.12 55 ZNF283-209 - 612 8.9e-07 29.1 72.5 6 13 0.017 18 5.6 0.7 24 49 334 359 325 361 0.87 TFIIH C1-like domain C1_4 PF07975.12 55 ZNF283-209 - 612 8.9e-07 29.1 72.5 7 13 0.12 1.3e+02 2.9 4.2 2 36 338 374 337 387 0.72 TFIIH C1-like domain C1_4 PF07975.12 55 ZNF283-209 - 612 8.9e-07 29.1 72.5 8 13 0.0013 1.4 9.2 1.3 1 49 365 415 365 419 0.84 TFIIH C1-like domain C1_4 PF07975.12 55 ZNF283-209 - 612 8.9e-07 29.1 72.5 9 13 0.012 13 6.2 4.9 1 48 393 442 393 445 0.78 TFIIH C1-like domain C1_4 PF07975.12 55 ZNF283-209 - 612 8.9e-07 29.1 72.5 10 13 0.03 32 4.9 6.8 1 49 421 471 421 474 0.87 TFIIH C1-like domain C1_4 PF07975.12 55 ZNF283-209 - 612 8.9e-07 29.1 72.5 11 13 0.051 54 4.1 3.9 1 37 449 487 449 501 0.73 TFIIH C1-like domain C1_4 PF07975.12 55 ZNF283-209 - 612 8.9e-07 29.1 72.5 12 13 0.0018 1.8 8.8 1.7 1 49 477 527 477 529 0.86 TFIIH C1-like domain C1_4 PF07975.12 55 ZNF283-209 - 612 8.9e-07 29.1 72.5 13 13 0.0015 1.6 9.0 1.3 2 49 506 555 505 557 0.82 TFIIH C1-like domain # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF283-209.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF283-209.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF283-209.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF283-209.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF283-209.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:03:23 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZNF284-201 - 593 1.1e-81 265.9 113.7 1 16 2.2 3.1e+03 -1.1 0.1 9 22 141 154 138 157 0.57 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF284-201 - 593 1.1e-81 265.9 113.7 2 16 0.023 32 5.2 0.2 3 24 163 184 162 184 0.90 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF284-201 - 593 1.1e-81 265.9 113.7 3 16 3.2e-09 4.5e-06 26.9 1.3 5 25 193 213 190 214 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF284-201 - 593 1.1e-81 265.9 113.7 4 16 1.2e-11 1.7e-08 34.5 0.6 2 25 218 241 217 242 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF284-201 - 593 1.1e-81 265.9 113.7 5 16 2.3e-07 0.00032 21.0 3.7 5 26 249 270 245 270 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF284-201 - 593 1.1e-81 265.9 113.7 6 16 1.5e-10 2.1e-07 31.1 1.8 2 25 274 297 273 298 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF284-201 - 593 1.1e-81 265.9 113.7 7 16 1.2e-07 0.00016 21.9 0.2 1 25 301 325 301 326 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF284-201 - 593 1.1e-81 265.9 113.7 8 16 8.7e-08 0.00012 22.3 4.2 1 25 329 353 329 354 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF284-201 - 593 1.1e-81 265.9 113.7 9 16 9.4e-08 0.00013 22.2 1.0 4 24 360 380 357 381 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF284-201 - 593 1.1e-81 265.9 113.7 10 16 4.3e-09 5.9e-06 26.5 0.6 2 24 386 408 386 409 0.97 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF284-201 - 593 1.1e-81 265.9 113.7 11 16 0.02 28 5.4 0.2 14 24 426 436 416 438 0.82 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF284-201 - 593 1.1e-81 265.9 113.7 12 16 6.2e-11 8.5e-08 32.3 0.4 1 24 441 464 441 465 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF284-201 - 593 1.1e-81 265.9 113.7 13 16 6e-11 8.2e-08 32.3 1.7 4 25 472 493 470 494 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF284-201 - 593 1.1e-81 265.9 113.7 14 16 6.7e-11 9.3e-08 32.2 1.8 2 24 498 520 497 521 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF284-201 - 593 1.1e-81 265.9 113.7 15 16 5.1e-06 0.007 16.8 0.7 5 25 529 549 527 550 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF284-201 - 593 1.1e-81 265.9 113.7 16 16 0.0045 6.2 7.4 0.3 8 25 560 577 558 578 0.89 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZNF284-201 - 593 9.1e-42 139.2 135.8 1 16 0.28 3.9e+02 1.8 0.5 5 23 151 169 149 169 0.90 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF284-201 - 593 9.1e-42 139.2 135.8 2 16 0.027 38 5.0 3.7 4 23 175 197 175 197 0.91 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF284-201 - 593 9.1e-42 139.2 135.8 3 16 2.9e-09 4e-06 27.0 0.9 1 23 203 225 203 225 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF284-201 - 593 9.1e-42 139.2 135.8 4 16 1.4e-05 0.019 15.4 3.8 1 23 231 253 231 253 0.92 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF284-201 - 593 9.1e-42 139.2 135.8 5 16 5.6e-08 7.7e-05 22.9 1.3 1 23 259 281 259 281 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF284-201 - 593 9.1e-42 139.2 135.8 6 16 3.3e-07 0.00045 20.5 3.7 1 23 287 309 287 309 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF284-201 - 593 9.1e-42 139.2 135.8 7 16 0.00074 1 9.9 2.5 1 19 315 333 315 337 0.93 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF284-201 - 593 9.1e-42 139.2 135.8 8 16 6e-05 0.083 13.4 5.5 1 23 343 365 343 365 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF284-201 - 593 9.1e-42 139.2 135.8 9 16 5.2e-06 0.0072 16.7 2.1 1 23 371 393 371 393 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF284-201 - 593 9.1e-42 139.2 135.8 10 16 0.00047 0.65 10.6 0.9 1 21 399 419 399 420 0.90 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF284-201 - 593 9.1e-42 139.2 135.8 11 16 1e-06 0.0014 18.9 0.8 1 23 427 449 427 449 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF284-201 - 593 9.1e-42 139.2 135.8 12 16 2.6e-05 0.036 14.5 0.4 1 23 455 477 455 477 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF284-201 - 593 9.1e-42 139.2 135.8 13 16 2.3e-06 0.0032 17.9 1.6 1 23 483 505 483 505 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF284-201 - 593 9.1e-42 139.2 135.8 14 16 0.00096 1.3 9.6 1.1 1 23 511 533 511 533 0.87 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF284-201 - 593 9.1e-42 139.2 135.8 15 16 0.00087 1.2 9.7 1.2 1 17 539 555 539 556 0.92 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF284-201 - 593 9.1e-42 139.2 135.8 16 16 0.0033 4.5 7.9 0.2 2 16 568 582 567 583 0.88 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZNF284-201 - 593 1.8e-24 84.3 124.8 1 16 1.8 2.4e+03 -0.1 0.2 6 23 152 169 150 170 0.77 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF284-201 - 593 1.8e-24 84.3 124.8 2 16 1.7 2.4e+03 -0.1 1.7 7 23 181 197 175 198 0.84 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF284-201 - 593 1.8e-24 84.3 124.8 3 16 1.8e-06 0.0024 18.5 0.8 1 23 203 225 203 226 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF284-201 - 593 1.8e-24 84.3 124.8 4 16 5.3e-06 0.0073 17.1 3.6 1 23 231 253 231 254 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF284-201 - 593 1.8e-24 84.3 124.8 5 16 0.00041 0.57 11.2 1.1 1 23 259 281 259 282 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF284-201 - 593 1.8e-24 84.3 124.8 6 16 2.3e-06 0.0032 18.2 2.5 1 23 287 309 287 310 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF284-201 - 593 1.8e-24 84.3 124.8 7 16 0.0024 3.4 8.8 1.8 1 23 315 337 315 338 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF284-201 - 593 1.8e-24 84.3 124.8 8 16 1.2e-05 0.017 15.9 4.6 1 23 343 365 343 366 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF284-201 - 593 1.8e-24 84.3 124.8 9 16 0.00037 0.51 11.3 2.0 1 23 371 393 371 394 0.90 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF284-201 - 593 1.8e-24 84.3 124.8 10 16 0.018 24 6.1 0.7 1 15 399 412 399 421 0.70 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF284-201 - 593 1.8e-24 84.3 124.8 11 16 0.00037 0.52 11.3 0.6 1 23 427 449 427 450 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF284-201 - 593 1.8e-24 84.3 124.8 12 16 0.00049 0.67 10.9 0.5 1 23 455 477 455 478 0.89 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF284-201 - 593 1.8e-24 84.3 124.8 13 16 4.8e-06 0.0067 17.2 1.3 1 23 483 505 483 506 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF284-201 - 593 1.8e-24 84.3 124.8 14 16 0.0034 4.7 8.3 1.3 1 23 511 533 511 534 0.82 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF284-201 - 593 1.8e-24 84.3 124.8 15 16 0.18 2.4e+02 3.0 0.9 1 11 539 549 539 556 0.76 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF284-201 - 593 1.8e-24 84.3 124.8 16 16 0.075 1e+02 4.1 0.1 2 13 568 579 567 583 0.83 C2H2-type zinc finger KRAB PF01352.27 42 ZNF284-201 - 593 2.2e-21 75.2 0.3 1 2 1.6e-24 2.2e-21 75.2 0.3 2 42 8 48 7 48 0.98 KRAB box KRAB PF01352.27 42 ZNF284-201 - 593 2.2e-21 75.2 0.3 2 2 6.3 8.7e+03 -3.5 0.0 18 28 334 344 333 344 0.89 KRAB box zf-C2H2_6 PF13912.6 27 ZNF284-201 - 593 4.7e-09 36.0 97.0 1 14 0.00012 0.17 11.9 0.4 1 12 202 213 202 225 0.84 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF284-201 - 593 4.7e-09 36.0 97.0 2 14 0.0034 4.7 7.3 1.8 2 12 231 241 231 242 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF284-201 - 593 4.7e-09 36.0 97.0 3 14 0.011 15 5.7 0.3 2 11 259 268 259 281 0.89 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF284-201 - 593 4.7e-09 36.0 97.0 4 14 4.2e-05 0.059 13.4 2.1 2 26 287 311 287 312 0.90 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF284-201 - 593 4.7e-09 36.0 97.0 5 14 0.00017 0.23 11.5 1.5 2 20 315 333 314 339 0.92 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF284-201 - 593 4.7e-09 36.0 97.0 6 14 0.0084 12 6.1 3.8 2 20 343 361 342 365 0.86 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF284-201 - 593 4.7e-09 36.0 97.0 7 14 0.0024 3.3 7.8 0.3 2 12 371 381 371 381 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF284-201 - 593 4.7e-09 36.0 97.0 8 14 0.0089 12 6.0 0.2 2 11 399 408 398 410 0.92 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF284-201 - 593 4.7e-09 36.0 97.0 9 14 0.022 31 4.7 0.3 2 11 427 436 426 438 0.87 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF284-201 - 593 4.7e-09 36.0 97.0 10 14 0.00025 0.35 10.9 1.3 2 12 455 465 455 465 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF284-201 - 593 4.7e-09 36.0 97.0 11 14 0.0069 9.5 6.4 1.5 2 11 483 492 483 494 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF284-201 - 593 4.7e-09 36.0 97.0 12 14 0.012 17 5.5 0.8 2 12 511 521 511 521 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF284-201 - 593 4.7e-09 36.0 97.0 13 14 2.9 3.9e+03 -2.0 0.2 2 10 539 547 538 547 0.88 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF284-201 - 593 4.7e-09 36.0 97.0 14 14 1.4 1.9e+03 -1.0 0.3 3 12 568 577 568 578 0.85 C2H2-type zinc finger BolA PF01722.18 76 ZNF284-201 - 593 2.8e-07 30.7 12.6 1 5 4.7e-05 0.065 13.5 0.2 23 53 195 225 178 227 0.86 BolA-like protein BolA PF01722.18 76 ZNF284-201 - 593 2.8e-07 30.7 12.6 2 5 6.1e-05 0.083 13.2 0.7 16 53 272 309 267 311 0.84 BolA-like protein BolA PF01722.18 76 ZNF284-201 - 593 2.8e-07 30.7 12.6 3 5 0.15 2.1e+02 2.3 0.0 27 50 311 334 309 337 0.90 BolA-like protein BolA PF01722.18 76 ZNF284-201 - 593 2.8e-07 30.7 12.6 4 5 0.038 53 4.2 0.0 19 53 361 393 352 396 0.86 BolA-like protein BolA PF01722.18 76 ZNF284-201 - 593 2.8e-07 30.7 12.6 5 5 0.31 4.3e+02 1.3 0.1 19 53 473 505 461 507 0.86 BolA-like protein Zn-ribbon_8 PF09723.10 40 ZNF284-201 - 593 9.1e-07 28.9 84.6 1 11 0.00053 0.73 10.0 3.5 6 38 203 242 202 243 0.87 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF284-201 - 593 9.1e-07 28.9 84.6 2 11 0.00016 0.22 11.7 5.2 6 34 231 266 230 270 0.87 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF284-201 - 593 9.1e-07 28.9 84.6 3 11 2.5 3.4e+03 -1.8 8.8 8 34 261 294 259 322 0.84 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF284-201 - 593 9.1e-07 28.9 84.6 4 11 0.18 2.5e+02 1.9 0.5 6 16 315 325 310 334 0.82 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF284-201 - 593 9.1e-07 28.9 84.6 5 11 0.0017 2.3 8.4 7.9 6 34 343 378 342 382 0.87 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF284-201 - 593 9.1e-07 28.9 84.6 6 11 0.0015 2.1 8.6 4.4 6 34 399 434 398 439 0.82 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF284-201 - 593 9.1e-07 28.9 84.6 7 11 0.00048 0.66 10.1 3.2 6 35 427 463 426 466 0.88 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF284-201 - 593 9.1e-07 28.9 84.6 8 11 0.013 18 5.5 0.3 6 16 455 465 454 474 0.86 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF284-201 - 593 9.1e-07 28.9 84.6 9 11 0.00013 0.18 12.0 7.2 6 34 483 518 482 521 0.88 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF284-201 - 593 9.1e-07 28.9 84.6 10 11 0.0058 8 6.7 0.7 6 16 511 521 510 531 0.87 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF284-201 - 593 9.1e-07 28.9 84.6 11 11 5.3e-05 0.073 13.2 5.1 6 39 539 579 538 580 0.82 Zinc ribbon domain # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF284-201.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF284-201.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF284-201.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF284-201.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF284-201.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:03:23 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZNF287-201 - 761 2.2e-101 328.2 103.9 1 15 3.9e-06 0.0034 17.8 0.5 10 25 363 378 355 379 0.80 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF287-201 - 761 2.2e-101 328.2 103.9 2 15 1.5e-06 0.0013 19.1 2.5 2 26 383 407 382 407 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF287-201 - 761 2.2e-101 328.2 103.9 3 15 3.6e-11 3.1e-08 33.7 0.4 2 25 411 434 410 435 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF287-201 - 761 2.2e-101 328.2 103.9 4 15 1.4e-10 1.2e-07 31.9 0.5 1 25 438 462 438 463 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF287-201 - 761 2.2e-101 328.2 103.9 5 15 5.3e-10 4.6e-07 30.0 3.9 1 26 466 491 466 491 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF287-201 - 761 2.2e-101 328.2 103.9 6 15 2.7e-09 2.3e-06 27.8 0.1 2 25 495 518 494 519 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF287-201 - 761 2.2e-101 328.2 103.9 7 15 3.4e-08 2.9e-05 24.3 1.7 1 25 522 546 522 547 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF287-201 - 761 2.2e-101 328.2 103.9 8 15 6.4e-08 5.5e-05 23.4 2.6 2 26 551 575 550 575 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF287-201 - 761 2.2e-101 328.2 103.9 9 15 4.3e-06 0.0036 17.6 0.1 3 25 580 602 579 603 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF287-201 - 761 2.2e-101 328.2 103.9 10 15 1.2e-11 9.8e-09 35.3 1.7 1 25 606 630 606 631 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF287-201 - 761 2.2e-101 328.2 103.9 11 15 2e-09 1.7e-06 28.2 1.0 1 24 634 657 634 659 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF287-201 - 761 2.2e-101 328.2 103.9 12 15 8.6e-12 7.4e-09 35.6 0.4 1 24 662 685 662 687 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF287-201 - 761 2.2e-101 328.2 103.9 13 15 2.6e-11 2.2e-08 34.2 0.5 1 25 690 714 690 715 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF287-201 - 761 2.2e-101 328.2 103.9 14 15 3.8e-10 3.2e-07 30.5 0.2 3 25 720 742 719 743 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF287-201 - 761 2.2e-101 328.2 103.9 15 15 0.06 51 4.5 0.4 1 13 746 758 746 759 0.87 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZNF287-201 - 761 1.9e-83 270.5 111.9 1 14 6.3e-07 0.00054 20.3 2.4 1 23 368 390 368 390 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF287-201 - 761 1.9e-83 270.5 111.9 2 14 6.2e-08 5.3e-05 23.5 0.5 1 23 396 418 396 418 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF287-201 - 761 1.9e-83 270.5 111.9 3 14 1.3e-08 1.1e-05 25.6 2.4 1 23 424 446 424 446 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF287-201 - 761 1.9e-83 270.5 111.9 4 14 3.6e-09 3.1e-06 27.3 1.9 1 23 452 474 452 474 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF287-201 - 761 1.9e-83 270.5 111.9 5 14 1.2e-08 1e-05 25.7 2.2 1 23 480 502 480 502 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF287-201 - 761 1.9e-83 270.5 111.9 6 14 5.9e-08 5e-05 23.5 1.7 1 23 508 530 508 530 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF287-201 - 761 1.9e-83 270.5 111.9 7 14 2.8e-08 2.4e-05 24.6 1.0 1 23 536 558 536 558 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF287-201 - 761 1.9e-83 270.5 111.9 8 14 4.9e-08 4.2e-05 23.8 1.3 1 23 564 586 564 586 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF287-201 - 761 1.9e-83 270.5 111.9 9 14 7.3e-09 6.2e-06 26.4 1.1 1 23 592 614 592 614 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF287-201 - 761 1.9e-83 270.5 111.9 10 14 9.8e-09 8.4e-06 26.0 1.6 1 23 620 642 620 642 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF287-201 - 761 1.9e-83 270.5 111.9 11 14 1.5e-07 0.00013 22.2 0.2 1 23 648 670 648 670 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF287-201 - 761 1.9e-83 270.5 111.9 12 14 4.3e-09 3.6e-06 27.1 1.0 1 23 676 698 676 698 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF287-201 - 761 1.9e-83 270.5 111.9 13 14 6.4e-07 0.00054 20.3 2.8 1 23 704 726 704 726 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF287-201 - 761 1.9e-83 270.5 111.9 14 14 1.1e-08 9.8e-06 25.8 0.5 1 23 732 754 732 754 0.98 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZNF287-201 - 761 5.4e-43 141.9 103.1 1 14 1.1e-05 0.009 16.8 1.3 1 23 368 390 368 391 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF287-201 - 761 5.4e-43 141.9 103.1 2 14 7.2e-05 0.062 14.2 0.6 1 23 396 418 396 419 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF287-201 - 761 5.4e-43 141.9 103.1 3 14 0.00014 0.12 13.3 1.9 1 23 424 446 424 447 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF287-201 - 761 5.4e-43 141.9 103.1 4 14 2e-05 0.017 15.9 1.0 1 23 452 474 452 475 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF287-201 - 761 5.4e-43 141.9 103.1 5 14 3.8e-05 0.032 15.0 1.9 1 23 480 502 480 503 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF287-201 - 761 5.4e-43 141.9 103.1 6 14 3.7e-06 0.0031 18.2 1.3 1 23 508 530 508 531 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF287-201 - 761 5.4e-43 141.9 103.1 7 14 0.0023 2 9.5 1.1 1 23 536 558 536 559 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF287-201 - 761 5.4e-43 141.9 103.1 8 14 0.00014 0.12 13.3 1.0 1 23 564 586 564 587 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF287-201 - 761 5.4e-43 141.9 103.1 9 14 8.3e-06 0.0071 17.1 0.7 1 23 592 614 592 615 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF287-201 - 761 5.4e-43 141.9 103.1 10 14 1.4e-05 0.012 16.4 1.4 1 23 620 642 620 643 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF287-201 - 761 5.4e-43 141.9 103.1 11 14 0.00021 0.18 12.7 0.2 1 23 648 670 648 671 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF287-201 - 761 5.4e-43 141.9 103.1 12 14 1.4e-05 0.012 16.4 0.7 1 23 676 698 676 699 0.97 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF287-201 - 761 5.4e-43 141.9 103.1 13 14 0.00019 0.16 12.9 2.0 1 23 704 726 704 727 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF287-201 - 761 5.4e-43 141.9 103.1 14 14 4.1e-06 0.0035 18.0 0.3 1 23 732 754 732 755 0.93 C2H2-type zinc finger SCAN PF02023.17 90 ZNF287-201 - 761 3e-39 132.7 1.2 1 1 7.5e-42 6.4e-39 131.7 1.2 2 89 46 133 45 134 0.97 SCAN domain zf-C2H2_6 PF13912.6 27 ZNF287-201 - 761 5.9e-22 77.2 102.2 1 14 2.6e-06 0.0023 17.9 2.5 2 26 368 392 368 393 0.95 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF287-201 - 761 5.9e-22 77.2 102.2 2 14 8.4e-06 0.0071 16.3 0.7 2 24 396 418 395 421 0.92 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF287-201 - 761 5.9e-22 77.2 102.2 3 14 0.0033 2.8 8.1 0.9 2 12 424 434 424 435 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF287-201 - 761 5.9e-22 77.2 102.2 4 14 0.053 45 4.2 0.5 2 12 452 462 452 476 0.78 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF287-201 - 761 5.9e-22 77.2 102.2 5 14 0.0052 4.4 7.4 1.8 2 24 480 502 480 505 0.85 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF287-201 - 761 5.9e-22 77.2 102.2 6 14 0.00077 0.66 10.0 0.7 2 12 508 518 508 530 0.86 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF287-201 - 761 5.9e-22 77.2 102.2 7 14 0.01 8.5 6.5 0.4 2 12 536 546 536 560 0.80 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF287-201 - 761 5.9e-22 77.2 102.2 8 14 0.0089 7.6 6.7 2.6 2 12 564 574 563 588 0.77 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF287-201 - 761 5.9e-22 77.2 102.2 9 14 7.3e-05 0.062 13.3 1.0 2 24 592 614 591 617 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF287-201 - 761 5.9e-22 77.2 102.2 10 14 0.00073 0.62 10.1 1.2 2 20 620 638 620 644 0.79 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF287-201 - 761 5.9e-22 77.2 102.2 11 14 0.00021 0.18 11.8 0.3 2 24 648 670 648 673 0.91 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF287-201 - 761 5.9e-22 77.2 102.2 12 14 4.2e-05 0.036 14.1 1.4 2 24 676 698 676 701 0.95 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF287-201 - 761 5.9e-22 77.2 102.2 13 14 0.014 12 6.1 1.3 2 12 704 714 704 726 0.85 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF287-201 - 761 5.9e-22 77.2 102.2 14 14 0.0009 0.77 9.8 0.3 2 24 732 754 732 756 0.90 C2H2-type zinc finger KRAB PF01352.27 42 ZNF287-201 - 761 3e-19 68.4 0.5 1 1 7.9e-22 6.7e-19 67.3 0.5 1 42 169 210 169 210 0.99 KRAB box Zn-ribbon_8 PF09723.10 40 ZNF287-201 - 761 6.9e-16 58.1 65.6 1 13 0.00078 0.66 10.1 6.8 6 37 368 406 367 407 0.88 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF287-201 - 761 6.9e-16 58.1 65.6 2 13 5.4e-06 0.0046 17.0 5.7 6 36 396 433 394 437 0.89 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF287-201 - 761 6.9e-16 58.1 65.6 3 13 4.2e-05 0.036 14.2 4.4 6 36 424 461 423 465 0.89 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF287-201 - 761 6.9e-16 58.1 65.6 4 13 0.00018 0.15 12.2 3.5 6 34 452 487 450 488 0.89 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF287-201 - 761 6.9e-16 58.1 65.6 5 13 1.8e-05 0.015 15.4 1.9 6 35 480 516 479 520 0.90 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF287-201 - 761 6.9e-16 58.1 65.6 6 13 0.00033 0.28 11.3 2.0 6 32 508 541 507 545 0.93 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF287-201 - 761 6.9e-16 58.1 65.6 7 13 0.0063 5.4 7.2 4.9 6 34 536 571 534 573 0.90 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF287-201 - 761 6.9e-16 58.1 65.6 8 13 0.00077 0.66 10.1 2.5 6 35 564 600 563 604 0.86 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF287-201 - 761 6.9e-16 58.1 65.6 9 13 0.14 1.2e+02 2.9 0.0 6 17 592 603 591 613 0.81 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF287-201 - 761 6.9e-16 58.1 65.6 10 13 0.00013 0.11 12.6 0.4 6 37 620 658 619 660 0.90 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF287-201 - 761 6.9e-16 58.1 65.6 11 13 0.0038 3.2 7.9 2.6 6 34 648 683 647 686 0.89 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF287-201 - 761 6.9e-16 58.1 65.6 12 13 0.02 17 5.6 0.6 6 15 676 685 674 697 0.88 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF287-201 - 761 6.9e-16 58.1 65.6 13 13 0.00021 0.18 12.0 3.8 6 36 704 741 703 745 0.90 Zinc ribbon domain XPA_N PF01286.18 32 ZNF287-201 - 761 2.4e-08 33.9 55.7 1 14 0.58 5e+02 0.9 0.2 3 11 369 377 367 379 0.80 XPA protein N-terminal XPA_N PF01286.18 32 ZNF287-201 - 761 2.4e-08 33.9 55.7 2 14 0.0066 5.7 7.1 0.3 3 11 397 405 396 411 0.91 XPA protein N-terminal XPA_N PF01286.18 32 ZNF287-201 - 761 2.4e-08 33.9 55.7 3 14 0.11 92 3.2 0.1 3 12 425 434 423 436 0.88 XPA protein N-terminal XPA_N PF01286.18 32 ZNF287-201 - 761 2.4e-08 33.9 55.7 4 14 0.029 25 5.0 0.3 3 12 453 462 451 464 0.88 XPA protein N-terminal XPA_N PF01286.18 32 ZNF287-201 - 761 2.4e-08 33.9 55.7 5 14 0.0017 1.4 9.0 0.1 3 14 481 492 479 498 0.88 XPA protein N-terminal XPA_N PF01286.18 32 ZNF287-201 - 761 2.4e-08 33.9 55.7 6 14 0.0029 2.5 8.2 0.1 3 14 509 520 507 526 0.88 XPA protein N-terminal XPA_N PF01286.18 32 ZNF287-201 - 761 2.4e-08 33.9 55.7 7 14 0.037 31 4.7 0.1 3 17 537 551 535 554 0.88 XPA protein N-terminal XPA_N PF01286.18 32 ZNF287-201 - 761 2.4e-08 33.9 55.7 8 14 0.0032 2.8 8.1 0.1 3 14 565 576 564 580 0.92 XPA protein N-terminal XPA_N PF01286.18 32 ZNF287-201 - 761 2.4e-08 33.9 55.7 9 14 0.2 1.7e+02 2.4 0.0 4 14 594 604 592 609 0.90 XPA protein N-terminal XPA_N PF01286.18 32 ZNF287-201 - 761 2.4e-08 33.9 55.7 10 14 0.047 40 4.4 0.1 3 15 621 633 619 638 0.85 XPA protein N-terminal XPA_N PF01286.18 32 ZNF287-201 - 761 2.4e-08 33.9 55.7 11 14 4.1 3.5e+03 -1.8 0.1 20 25 648 653 646 656 0.68 XPA protein N-terminal XPA_N PF01286.18 32 ZNF287-201 - 761 2.4e-08 33.9 55.7 12 14 0.012 10 6.3 0.1 3 14 677 688 675 691 0.87 XPA protein N-terminal XPA_N PF01286.18 32 ZNF287-201 - 761 2.4e-08 33.9 55.7 13 14 0.092 79 3.4 0.7 3 12 705 714 703 715 0.87 XPA protein N-terminal XPA_N PF01286.18 32 ZNF287-201 - 761 2.4e-08 33.9 55.7 14 14 0.14 1.2e+02 2.8 0.0 4 14 734 744 732 745 0.91 XPA protein N-terminal zinc_ribbon_15 PF17032.5 86 ZNF287-201 - 761 8e-07 29.7 61.3 1 11 0.00085 0.72 10.6 3.0 37 75 367 405 356 411 0.89 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF287-201 - 761 8e-07 29.7 61.3 2 11 0.0035 3 8.7 1.2 31 77 417 463 410 470 0.84 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF287-201 - 761 8e-07 29.7 61.3 3 11 0.002 1.7 9.4 1.0 32 78 446 492 441 495 0.86 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF287-201 - 761 8e-07 29.7 61.3 4 11 0.00081 0.7 10.7 1.2 34 78 476 520 466 523 0.86 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF287-201 - 761 8e-07 29.7 61.3 5 11 0.0012 1.1 10.1 2.0 30 77 500 547 495 551 0.84 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF287-201 - 761 8e-07 29.7 61.3 6 11 0.0034 2.9 8.7 3.8 30 77 528 575 522 579 0.85 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF287-201 - 761 8e-07 29.7 61.3 7 11 0.00012 0.1 13.4 3.9 25 79 551 605 546 609 0.89 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF287-201 - 761 8e-07 29.7 61.3 8 11 0.011 9.4 7.1 1.3 33 77 615 659 608 663 0.83 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF287-201 - 761 8e-07 29.7 61.3 9 11 0.0051 4.3 8.1 1.5 31 74 641 684 637 691 0.86 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF287-201 - 761 8e-07 29.7 61.3 10 11 0.0087 7.4 7.4 4.2 31 77 669 715 663 718 0.86 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF287-201 - 761 8e-07 29.7 61.3 11 11 0.18 1.5e+02 3.2 0.2 24 56 718 750 715 759 0.80 zinc-ribbon family # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF287-201.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF287-201.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF287-201.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF287-201.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF287-201.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:03:24 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZNF287-202 - 761 2.2e-101 328.2 103.9 1 15 3.9e-06 0.0034 17.8 0.5 10 25 363 378 355 379 0.80 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF287-202 - 761 2.2e-101 328.2 103.9 2 15 1.5e-06 0.0013 19.1 2.5 2 26 383 407 382 407 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF287-202 - 761 2.2e-101 328.2 103.9 3 15 3.6e-11 3.1e-08 33.7 0.4 2 25 411 434 410 435 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF287-202 - 761 2.2e-101 328.2 103.9 4 15 1.4e-10 1.2e-07 31.9 0.5 1 25 438 462 438 463 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF287-202 - 761 2.2e-101 328.2 103.9 5 15 5.3e-10 4.6e-07 30.0 3.9 1 26 466 491 466 491 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF287-202 - 761 2.2e-101 328.2 103.9 6 15 2.7e-09 2.3e-06 27.8 0.1 2 25 495 518 494 519 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF287-202 - 761 2.2e-101 328.2 103.9 7 15 3.4e-08 2.9e-05 24.3 1.7 1 25 522 546 522 547 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF287-202 - 761 2.2e-101 328.2 103.9 8 15 6.4e-08 5.5e-05 23.4 2.6 2 26 551 575 550 575 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF287-202 - 761 2.2e-101 328.2 103.9 9 15 4.3e-06 0.0036 17.6 0.1 3 25 580 602 579 603 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF287-202 - 761 2.2e-101 328.2 103.9 10 15 1.2e-11 9.8e-09 35.3 1.7 1 25 606 630 606 631 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF287-202 - 761 2.2e-101 328.2 103.9 11 15 2e-09 1.7e-06 28.2 1.0 1 24 634 657 634 659 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF287-202 - 761 2.2e-101 328.2 103.9 12 15 8.6e-12 7.4e-09 35.6 0.4 1 24 662 685 662 687 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF287-202 - 761 2.2e-101 328.2 103.9 13 15 2.6e-11 2.2e-08 34.2 0.5 1 25 690 714 690 715 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF287-202 - 761 2.2e-101 328.2 103.9 14 15 3.8e-10 3.2e-07 30.5 0.2 3 25 720 742 719 743 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF287-202 - 761 2.2e-101 328.2 103.9 15 15 0.06 51 4.5 0.4 1 13 746 758 746 759 0.87 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZNF287-202 - 761 1.9e-83 270.5 111.9 1 14 6.3e-07 0.00054 20.3 2.4 1 23 368 390 368 390 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF287-202 - 761 1.9e-83 270.5 111.9 2 14 6.2e-08 5.3e-05 23.5 0.5 1 23 396 418 396 418 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF287-202 - 761 1.9e-83 270.5 111.9 3 14 1.3e-08 1.1e-05 25.6 2.4 1 23 424 446 424 446 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF287-202 - 761 1.9e-83 270.5 111.9 4 14 3.6e-09 3.1e-06 27.3 1.9 1 23 452 474 452 474 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF287-202 - 761 1.9e-83 270.5 111.9 5 14 1.2e-08 1e-05 25.7 2.2 1 23 480 502 480 502 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF287-202 - 761 1.9e-83 270.5 111.9 6 14 5.9e-08 5e-05 23.5 1.7 1 23 508 530 508 530 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF287-202 - 761 1.9e-83 270.5 111.9 7 14 2.8e-08 2.4e-05 24.6 1.0 1 23 536 558 536 558 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF287-202 - 761 1.9e-83 270.5 111.9 8 14 4.9e-08 4.2e-05 23.8 1.3 1 23 564 586 564 586 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF287-202 - 761 1.9e-83 270.5 111.9 9 14 7.3e-09 6.2e-06 26.4 1.1 1 23 592 614 592 614 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF287-202 - 761 1.9e-83 270.5 111.9 10 14 9.8e-09 8.4e-06 26.0 1.6 1 23 620 642 620 642 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF287-202 - 761 1.9e-83 270.5 111.9 11 14 1.5e-07 0.00013 22.2 0.2 1 23 648 670 648 670 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF287-202 - 761 1.9e-83 270.5 111.9 12 14 4.3e-09 3.6e-06 27.1 1.0 1 23 676 698 676 698 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF287-202 - 761 1.9e-83 270.5 111.9 13 14 6.4e-07 0.00054 20.3 2.8 1 23 704 726 704 726 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF287-202 - 761 1.9e-83 270.5 111.9 14 14 1.1e-08 9.8e-06 25.8 0.5 1 23 732 754 732 754 0.98 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZNF287-202 - 761 5.4e-43 141.9 103.1 1 14 1.1e-05 0.009 16.8 1.3 1 23 368 390 368 391 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF287-202 - 761 5.4e-43 141.9 103.1 2 14 7.2e-05 0.062 14.2 0.6 1 23 396 418 396 419 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF287-202 - 761 5.4e-43 141.9 103.1 3 14 0.00014 0.12 13.3 1.9 1 23 424 446 424 447 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF287-202 - 761 5.4e-43 141.9 103.1 4 14 2e-05 0.017 15.9 1.0 1 23 452 474 452 475 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF287-202 - 761 5.4e-43 141.9 103.1 5 14 3.8e-05 0.032 15.0 1.9 1 23 480 502 480 503 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF287-202 - 761 5.4e-43 141.9 103.1 6 14 3.7e-06 0.0031 18.2 1.3 1 23 508 530 508 531 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF287-202 - 761 5.4e-43 141.9 103.1 7 14 0.0023 2 9.5 1.1 1 23 536 558 536 559 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF287-202 - 761 5.4e-43 141.9 103.1 8 14 0.00014 0.12 13.3 1.0 1 23 564 586 564 587 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF287-202 - 761 5.4e-43 141.9 103.1 9 14 8.3e-06 0.0071 17.1 0.7 1 23 592 614 592 615 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF287-202 - 761 5.4e-43 141.9 103.1 10 14 1.4e-05 0.012 16.4 1.4 1 23 620 642 620 643 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF287-202 - 761 5.4e-43 141.9 103.1 11 14 0.00021 0.18 12.7 0.2 1 23 648 670 648 671 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF287-202 - 761 5.4e-43 141.9 103.1 12 14 1.4e-05 0.012 16.4 0.7 1 23 676 698 676 699 0.97 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF287-202 - 761 5.4e-43 141.9 103.1 13 14 0.00019 0.16 12.9 2.0 1 23 704 726 704 727 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF287-202 - 761 5.4e-43 141.9 103.1 14 14 4.1e-06 0.0035 18.0 0.3 1 23 732 754 732 755 0.93 C2H2-type zinc finger SCAN PF02023.17 90 ZNF287-202 - 761 3e-39 132.7 1.2 1 1 7.5e-42 6.4e-39 131.7 1.2 2 89 46 133 45 134 0.97 SCAN domain zf-C2H2_6 PF13912.6 27 ZNF287-202 - 761 5.9e-22 77.2 102.2 1 14 2.6e-06 0.0023 17.9 2.5 2 26 368 392 368 393 0.95 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF287-202 - 761 5.9e-22 77.2 102.2 2 14 8.4e-06 0.0071 16.3 0.7 2 24 396 418 395 421 0.92 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF287-202 - 761 5.9e-22 77.2 102.2 3 14 0.0033 2.8 8.1 0.9 2 12 424 434 424 435 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF287-202 - 761 5.9e-22 77.2 102.2 4 14 0.053 45 4.2 0.5 2 12 452 462 452 476 0.78 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF287-202 - 761 5.9e-22 77.2 102.2 5 14 0.0052 4.4 7.4 1.8 2 24 480 502 480 505 0.85 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF287-202 - 761 5.9e-22 77.2 102.2 6 14 0.00077 0.66 10.0 0.7 2 12 508 518 508 530 0.86 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF287-202 - 761 5.9e-22 77.2 102.2 7 14 0.01 8.5 6.5 0.4 2 12 536 546 536 560 0.80 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF287-202 - 761 5.9e-22 77.2 102.2 8 14 0.0089 7.6 6.7 2.6 2 12 564 574 563 588 0.77 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF287-202 - 761 5.9e-22 77.2 102.2 9 14 7.3e-05 0.062 13.3 1.0 2 24 592 614 591 617 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF287-202 - 761 5.9e-22 77.2 102.2 10 14 0.00073 0.62 10.1 1.2 2 20 620 638 620 644 0.79 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF287-202 - 761 5.9e-22 77.2 102.2 11 14 0.00021 0.18 11.8 0.3 2 24 648 670 648 673 0.91 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF287-202 - 761 5.9e-22 77.2 102.2 12 14 4.2e-05 0.036 14.1 1.4 2 24 676 698 676 701 0.95 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF287-202 - 761 5.9e-22 77.2 102.2 13 14 0.014 12 6.1 1.3 2 12 704 714 704 726 0.85 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF287-202 - 761 5.9e-22 77.2 102.2 14 14 0.0009 0.77 9.8 0.3 2 24 732 754 732 756 0.90 C2H2-type zinc finger KRAB PF01352.27 42 ZNF287-202 - 761 3e-19 68.4 0.5 1 1 7.9e-22 6.7e-19 67.3 0.5 1 42 169 210 169 210 0.99 KRAB box Zn-ribbon_8 PF09723.10 40 ZNF287-202 - 761 6.9e-16 58.1 65.6 1 13 0.00078 0.66 10.1 6.8 6 37 368 406 367 407 0.88 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF287-202 - 761 6.9e-16 58.1 65.6 2 13 5.4e-06 0.0046 17.0 5.7 6 36 396 433 394 437 0.89 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF287-202 - 761 6.9e-16 58.1 65.6 3 13 4.2e-05 0.036 14.2 4.4 6 36 424 461 423 465 0.89 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF287-202 - 761 6.9e-16 58.1 65.6 4 13 0.00018 0.15 12.2 3.5 6 34 452 487 450 488 0.89 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF287-202 - 761 6.9e-16 58.1 65.6 5 13 1.8e-05 0.015 15.4 1.9 6 35 480 516 479 520 0.90 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF287-202 - 761 6.9e-16 58.1 65.6 6 13 0.00033 0.28 11.3 2.0 6 32 508 541 507 545 0.93 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF287-202 - 761 6.9e-16 58.1 65.6 7 13 0.0063 5.4 7.2 4.9 6 34 536 571 534 573 0.90 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF287-202 - 761 6.9e-16 58.1 65.6 8 13 0.00077 0.66 10.1 2.5 6 35 564 600 563 604 0.86 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF287-202 - 761 6.9e-16 58.1 65.6 9 13 0.14 1.2e+02 2.9 0.0 6 17 592 603 591 613 0.81 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF287-202 - 761 6.9e-16 58.1 65.6 10 13 0.00013 0.11 12.6 0.4 6 37 620 658 619 660 0.90 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF287-202 - 761 6.9e-16 58.1 65.6 11 13 0.0038 3.2 7.9 2.6 6 34 648 683 647 686 0.89 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF287-202 - 761 6.9e-16 58.1 65.6 12 13 0.02 17 5.6 0.6 6 15 676 685 674 697 0.88 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF287-202 - 761 6.9e-16 58.1 65.6 13 13 0.00021 0.18 12.0 3.8 6 36 704 741 703 745 0.90 Zinc ribbon domain XPA_N PF01286.18 32 ZNF287-202 - 761 2.4e-08 33.9 55.7 1 14 0.58 5e+02 0.9 0.2 3 11 369 377 367 379 0.80 XPA protein N-terminal XPA_N PF01286.18 32 ZNF287-202 - 761 2.4e-08 33.9 55.7 2 14 0.0066 5.7 7.1 0.3 3 11 397 405 396 411 0.91 XPA protein N-terminal XPA_N PF01286.18 32 ZNF287-202 - 761 2.4e-08 33.9 55.7 3 14 0.11 92 3.2 0.1 3 12 425 434 423 436 0.88 XPA protein N-terminal XPA_N PF01286.18 32 ZNF287-202 - 761 2.4e-08 33.9 55.7 4 14 0.029 25 5.0 0.3 3 12 453 462 451 464 0.88 XPA protein N-terminal XPA_N PF01286.18 32 ZNF287-202 - 761 2.4e-08 33.9 55.7 5 14 0.0017 1.4 9.0 0.1 3 14 481 492 479 498 0.88 XPA protein N-terminal XPA_N PF01286.18 32 ZNF287-202 - 761 2.4e-08 33.9 55.7 6 14 0.0029 2.5 8.2 0.1 3 14 509 520 507 526 0.88 XPA protein N-terminal XPA_N PF01286.18 32 ZNF287-202 - 761 2.4e-08 33.9 55.7 7 14 0.037 31 4.7 0.1 3 17 537 551 535 554 0.88 XPA protein N-terminal XPA_N PF01286.18 32 ZNF287-202 - 761 2.4e-08 33.9 55.7 8 14 0.0032 2.8 8.1 0.1 3 14 565 576 564 580 0.92 XPA protein N-terminal XPA_N PF01286.18 32 ZNF287-202 - 761 2.4e-08 33.9 55.7 9 14 0.2 1.7e+02 2.4 0.0 4 14 594 604 592 609 0.90 XPA protein N-terminal XPA_N PF01286.18 32 ZNF287-202 - 761 2.4e-08 33.9 55.7 10 14 0.047 40 4.4 0.1 3 15 621 633 619 638 0.85 XPA protein N-terminal XPA_N PF01286.18 32 ZNF287-202 - 761 2.4e-08 33.9 55.7 11 14 4.1 3.5e+03 -1.8 0.1 20 25 648 653 646 656 0.68 XPA protein N-terminal XPA_N PF01286.18 32 ZNF287-202 - 761 2.4e-08 33.9 55.7 12 14 0.012 10 6.3 0.1 3 14 677 688 675 691 0.87 XPA protein N-terminal XPA_N PF01286.18 32 ZNF287-202 - 761 2.4e-08 33.9 55.7 13 14 0.092 79 3.4 0.7 3 12 705 714 703 715 0.87 XPA protein N-terminal XPA_N PF01286.18 32 ZNF287-202 - 761 2.4e-08 33.9 55.7 14 14 0.14 1.2e+02 2.8 0.0 4 14 734 744 732 745 0.91 XPA protein N-terminal zinc_ribbon_15 PF17032.5 86 ZNF287-202 - 761 8e-07 29.7 61.3 1 11 0.00085 0.72 10.6 3.0 37 75 367 405 356 411 0.89 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF287-202 - 761 8e-07 29.7 61.3 2 11 0.0035 3 8.7 1.2 31 77 417 463 410 470 0.84 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF287-202 - 761 8e-07 29.7 61.3 3 11 0.002 1.7 9.4 1.0 32 78 446 492 441 495 0.86 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF287-202 - 761 8e-07 29.7 61.3 4 11 0.00081 0.7 10.7 1.2 34 78 476 520 466 523 0.86 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF287-202 - 761 8e-07 29.7 61.3 5 11 0.0012 1.1 10.1 2.0 30 77 500 547 495 551 0.84 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF287-202 - 761 8e-07 29.7 61.3 6 11 0.0034 2.9 8.7 3.8 30 77 528 575 522 579 0.85 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF287-202 - 761 8e-07 29.7 61.3 7 11 0.00012 0.1 13.4 3.9 25 79 551 605 546 609 0.89 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF287-202 - 761 8e-07 29.7 61.3 8 11 0.011 9.4 7.1 1.3 33 77 615 659 608 663 0.83 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF287-202 - 761 8e-07 29.7 61.3 9 11 0.0051 4.3 8.1 1.5 31 74 641 684 637 691 0.86 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF287-202 - 761 8e-07 29.7 61.3 10 11 0.0087 7.4 7.4 4.2 31 77 669 715 663 718 0.86 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF287-202 - 761 8e-07 29.7 61.3 11 11 0.18 1.5e+02 3.2 0.2 24 56 718 750 715 759 0.80 zinc-ribbon family # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF287-202.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF287-202.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF287-202.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF287-202.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF287-202.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:03:24 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF287-203.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF287-203.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF287-203.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF287-203.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF287-203.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:03:25 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF287-205.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF287-205.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF287-205.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF287-205.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF287-205.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:03:25 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF287-206.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF287-206.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF287-206.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF287-206.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF287-206.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:03:25 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-C2H2 PF00096.26 23 ZNF292-201 - 2718 7.1e-16 57.7 98.8 1 16 4.7 8.3e+03 -2.4 0.2 3 10 539 546 538 547 0.90 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF292-201 - 2718 7.1e-16 57.7 98.8 2 16 0.0038 6.8 7.4 0.4 1 23 564 586 564 586 0.89 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF292-201 - 2718 7.1e-16 57.7 98.8 3 16 0.00045 0.8 10.3 0.7 1 23 676 700 676 700 0.95 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF292-201 - 2718 7.1e-16 57.7 98.8 4 16 0.0018 3.1 8.4 3.8 3 23 719 739 718 739 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF292-201 - 2718 7.1e-16 57.7 98.8 5 16 0.16 2.9e+02 2.2 0.2 5 23 751 769 745 769 0.91 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF292-201 - 2718 7.1e-16 57.7 98.8 6 16 0.011 20 5.9 0.1 3 23 776 798 775 798 0.87 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF292-201 - 2718 7.1e-16 57.7 98.8 7 16 1.9e-06 0.0034 17.7 0.3 1 23 802 826 802 826 0.95 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF292-201 - 2718 7.1e-16 57.7 98.8 8 16 0.00069 1.2 9.7 0.4 1 23 1093 1118 1093 1118 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF292-201 - 2718 7.1e-16 57.7 98.8 9 16 0.0083 15 6.3 0.2 1 21 1370 1390 1370 1391 0.90 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF292-201 - 2718 7.1e-16 57.7 98.8 10 16 0.019 34 5.2 0.3 1 23 1897 1922 1897 1922 0.93 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF292-201 - 2718 7.1e-16 57.7 98.8 11 16 1e-05 0.019 15.4 2.1 1 19 1942 1962 1942 1967 0.89 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF292-201 - 2718 7.1e-16 57.7 98.8 12 16 0.05 90 3.8 0.3 1 23 2109 2134 2109 2134 0.94 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF292-201 - 2718 7.1e-16 57.7 98.8 13 16 0.0061 11 6.7 0.2 1 23 2167 2192 2167 2192 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF292-201 - 2718 7.1e-16 57.7 98.8 14 16 0.015 27 5.5 0.2 1 23 2211 2236 2211 2236 0.91 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF292-201 - 2718 7.1e-16 57.7 98.8 15 16 1.1e-05 0.02 15.3 1.5 1 23 2251 2276 2251 2276 0.87 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF292-201 - 2718 7.1e-16 57.7 98.8 16 16 0.59 1.1e+03 0.5 0.9 1 21 2381 2403 2381 2405 0.92 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZNF292-201 - 2718 1.7e-10 40.8 97.0 1 16 0.61 1.1e+03 0.9 0.9 2 23 538 558 538 559 0.83 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF292-201 - 2718 1.7e-10 40.8 97.0 2 16 0.00023 0.42 11.6 0.3 1 23 564 586 564 587 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF292-201 - 2718 1.7e-10 40.8 97.0 3 16 0.0018 3.1 8.9 0.7 1 23 676 700 676 701 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF292-201 - 2718 1.7e-10 40.8 97.0 4 16 0.00013 0.23 12.4 2.3 2 23 718 739 717 739 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF292-201 - 2718 1.7e-10 40.8 97.0 5 16 0.003 5.4 8.1 0.2 1 23 745 769 745 770 0.91 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF292-201 - 2718 1.7e-10 40.8 97.0 6 16 0.031 55 5.0 0.2 4 23 779 798 775 799 0.85 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF292-201 - 2718 1.7e-10 40.8 97.0 7 16 0.00041 0.73 10.8 0.2 1 23 802 826 802 827 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF292-201 - 2718 1.7e-10 40.8 97.0 8 16 0.00048 0.87 10.6 0.3 1 24 1093 1118 1093 1118 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF292-201 - 2718 1.7e-10 40.8 97.0 9 16 0.0025 4.6 8.4 0.2 1 22 1370 1391 1370 1393 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF292-201 - 2718 1.7e-10 40.8 97.0 10 16 1.3 2.2e+03 -0.0 0.2 3 24 1899 1922 1897 1922 0.79 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF292-201 - 2718 1.7e-10 40.8 97.0 11 16 0.0018 3.1 8.9 1.9 1 24 1942 1967 1942 1967 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF292-201 - 2718 1.7e-10 40.8 97.0 12 16 0.42 7.5e+02 1.5 0.4 1 24 2109 2134 2109 2134 0.90 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF292-201 - 2718 1.7e-10 40.8 97.0 13 16 0.14 2.5e+02 3.0 0.2 1 24 2167 2192 2167 2192 0.90 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF292-201 - 2718 1.7e-10 40.8 97.0 14 16 0.03 53 5.0 0.2 1 24 2211 2236 2211 2236 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF292-201 - 2718 1.7e-10 40.8 97.0 15 16 0.0014 2.6 9.1 0.9 3 24 2255 2276 2251 2276 0.88 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF292-201 - 2718 1.7e-10 40.8 97.0 16 16 6.4 1.1e+04 -2.2 0.7 1 21 2381 2403 2381 2405 0.85 C2H2-type zinc finger # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF292-201.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF292-201.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF292-201.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF292-201.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF292-201.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:03:26 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-C2H2 PF00096.26 23 ZNF292-202 - 2723 7.3e-16 57.6 98.8 1 16 4.7 8.4e+03 -2.4 0.2 3 10 544 551 543 552 0.90 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF292-202 - 2723 7.3e-16 57.6 98.8 2 16 0.0038 6.8 7.4 0.4 1 23 569 591 569 591 0.89 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF292-202 - 2723 7.3e-16 57.6 98.8 3 16 0.00045 0.8 10.3 0.7 1 23 681 705 681 705 0.95 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF292-202 - 2723 7.3e-16 57.6 98.8 4 16 0.0018 3.1 8.4 3.8 3 23 724 744 723 744 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF292-202 - 2723 7.3e-16 57.6 98.8 5 16 0.16 2.9e+02 2.2 0.2 5 23 756 774 750 774 0.91 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF292-202 - 2723 7.3e-16 57.6 98.8 6 16 0.011 20 5.9 0.1 3 23 781 803 780 803 0.87 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF292-202 - 2723 7.3e-16 57.6 98.8 7 16 1.9e-06 0.0034 17.7 0.3 1 23 807 831 807 831 0.95 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF292-202 - 2723 7.3e-16 57.6 98.8 8 16 0.00069 1.2 9.7 0.4 1 23 1098 1123 1098 1123 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF292-202 - 2723 7.3e-16 57.6 98.8 9 16 0.0084 15 6.3 0.2 1 21 1375 1395 1375 1396 0.90 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF292-202 - 2723 7.3e-16 57.6 98.8 10 16 0.019 34 5.2 0.3 1 23 1902 1927 1902 1927 0.93 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF292-202 - 2723 7.3e-16 57.6 98.8 11 16 1e-05 0.019 15.4 2.1 1 19 1947 1967 1947 1972 0.89 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF292-202 - 2723 7.3e-16 57.6 98.8 12 16 0.05 90 3.8 0.3 1 23 2114 2139 2114 2139 0.94 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF292-202 - 2723 7.3e-16 57.6 98.8 13 16 0.0061 11 6.7 0.2 1 23 2172 2197 2172 2197 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF292-202 - 2723 7.3e-16 57.6 98.8 14 16 0.015 27 5.5 0.2 1 23 2216 2241 2216 2241 0.91 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF292-202 - 2723 7.3e-16 57.6 98.8 15 16 1.1e-05 0.02 15.3 1.5 1 23 2256 2281 2256 2281 0.87 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF292-202 - 2723 7.3e-16 57.6 98.8 16 16 0.59 1.1e+03 0.5 0.9 1 21 2386 2408 2386 2410 0.92 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZNF292-202 - 2723 1.8e-10 40.7 97.0 1 16 0.61 1.1e+03 0.9 0.9 2 23 543 563 543 564 0.83 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF292-202 - 2723 1.8e-10 40.7 97.0 2 16 0.00023 0.42 11.6 0.3 1 23 569 591 569 592 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF292-202 - 2723 1.8e-10 40.7 97.0 3 16 0.0018 3.1 8.9 0.7 1 23 681 705 681 706 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF292-202 - 2723 1.8e-10 40.7 97.0 4 16 0.00013 0.23 12.4 2.3 2 23 723 744 722 744 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF292-202 - 2723 1.8e-10 40.7 97.0 5 16 0.003 5.4 8.1 0.2 1 23 750 774 750 775 0.91 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF292-202 - 2723 1.8e-10 40.7 97.0 6 16 0.031 55 5.0 0.2 4 23 784 803 780 804 0.85 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF292-202 - 2723 1.8e-10 40.7 97.0 7 16 0.00041 0.73 10.8 0.2 1 23 807 831 807 832 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF292-202 - 2723 1.8e-10 40.7 97.0 8 16 0.00048 0.87 10.6 0.3 1 24 1098 1123 1098 1123 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF292-202 - 2723 1.8e-10 40.7 97.0 9 16 0.0026 4.6 8.4 0.2 1 22 1375 1396 1375 1398 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF292-202 - 2723 1.8e-10 40.7 97.0 10 16 1.3 2.2e+03 -0.0 0.2 3 24 1904 1927 1902 1927 0.79 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF292-202 - 2723 1.8e-10 40.7 97.0 11 16 0.0018 3.1 8.9 1.9 1 24 1947 1972 1947 1972 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF292-202 - 2723 1.8e-10 40.7 97.0 12 16 0.42 7.5e+02 1.5 0.4 1 24 2114 2139 2114 2139 0.90 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF292-202 - 2723 1.8e-10 40.7 97.0 13 16 0.14 2.5e+02 3.0 0.2 1 24 2172 2197 2172 2197 0.90 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF292-202 - 2723 1.8e-10 40.7 97.0 14 16 0.03 53 5.0 0.2 1 24 2216 2241 2216 2241 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF292-202 - 2723 1.8e-10 40.7 97.0 15 16 0.0015 2.6 9.1 0.9 3 24 2260 2281 2256 2281 0.88 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF292-202 - 2723 1.8e-10 40.7 97.0 16 16 6.4 1.1e+04 -2.2 0.7 1 21 2386 2408 2386 2410 0.85 C2H2-type zinc finger # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF292-202.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF292-202.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF292-202.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF292-202.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF292-202.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:03:26 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF292-203.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF292-203.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF292-203.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF292-203.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF292-203.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:03:27 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF292-204.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF292-204.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF292-204.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF292-204.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF292-204.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:03:27 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF292-205.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF292-205.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF292-205.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF292-205.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF292-205.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:03:27 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF292-206.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF292-206.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF292-206.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF292-206.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF292-206.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:03:28 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF292-207.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF292-207.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF292-207.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF292-207.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF292-207.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:03:28 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF292-208.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF292-208.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF292-208.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF292-208.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF292-208.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:03:29 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF292-209.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF292-209.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF292-209.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF292-209.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF292-209.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:03:29 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZNF300-201 - 604 2.9e-88 286.7 66.2 1 13 0.29 2.4e+02 2.4 1.1 10 25 264 279 260 280 0.82 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF300-201 - 604 2.9e-88 286.7 66.2 2 13 5.8e-09 4.7e-06 26.8 0.1 4 25 286 307 283 308 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF300-201 - 604 2.9e-88 286.7 66.2 3 13 3.6e-11 2.9e-08 33.8 0.5 1 25 311 335 311 336 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF300-201 - 604 2.9e-88 286.7 66.2 4 13 9.7e-12 7.9e-09 35.6 0.1 5 25 343 363 339 364 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF300-201 - 604 2.9e-88 286.7 66.2 5 13 9.4e-11 7.6e-08 32.4 0.1 5 25 371 391 368 392 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF300-201 - 604 2.9e-88 286.7 66.2 6 13 3.2e-08 2.6e-05 24.4 1.0 5 24 399 418 396 418 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF300-201 - 604 2.9e-88 286.7 66.2 7 13 7.8e-09 6.3e-06 26.4 0.8 4 25 426 447 423 448 0.90 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF300-201 - 604 2.9e-88 286.7 66.2 8 13 2.5e-10 2.1e-07 31.1 0.3 3 25 453 475 451 476 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF300-201 - 604 2.9e-88 286.7 66.2 9 13 1.3e-10 1e-07 32.0 0.6 5 24 483 502 480 502 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF300-201 - 604 2.9e-88 286.7 66.2 10 13 9.1e-09 7.4e-06 26.2 0.3 4 25 510 531 507 532 0.90 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF300-201 - 604 2.9e-88 286.7 66.2 11 13 4.4e-08 3.6e-05 24.0 0.4 5 25 539 559 535 560 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF300-201 - 604 2.9e-88 286.7 66.2 12 13 3.7e-10 3e-07 30.5 0.0 1 24 563 586 563 588 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF300-201 - 604 2.9e-88 286.7 66.2 13 13 0.23 1.8e+02 2.8 0.1 2 13 592 603 591 604 0.86 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZNF300-201 - 604 8.5e-74 240.1 74.5 1 13 2.6 2.1e+03 -0.5 0.0 5 16 245 256 244 258 0.83 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF300-201 - 604 8.5e-74 240.1 74.5 2 13 1.1e-07 8.6e-05 22.8 0.6 2 23 270 291 269 291 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF300-201 - 604 8.5e-74 240.1 74.5 3 13 1.7e-07 0.00014 22.1 0.6 1 23 297 319 297 319 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF300-201 - 604 8.5e-74 240.1 74.5 4 13 9.5e-09 7.7e-06 26.1 0.2 1 23 325 347 325 347 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF300-201 - 604 8.5e-74 240.1 74.5 5 13 4.6e-08 3.7e-05 23.9 0.1 1 23 353 375 353 375 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF300-201 - 604 8.5e-74 240.1 74.5 6 13 4.7e-08 3.8e-05 23.9 0.8 1 23 381 403 381 403 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF300-201 - 604 8.5e-74 240.1 74.5 7 13 2.9e-07 0.00024 21.4 2.3 1 23 409 431 409 431 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF300-201 - 604 8.5e-74 240.1 74.5 8 13 2.1e-06 0.0017 18.7 0.2 1 23 437 459 437 459 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF300-201 - 604 8.5e-74 240.1 74.5 9 13 3.8e-10 3.1e-07 30.5 0.9 1 23 465 487 465 487 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF300-201 - 604 8.5e-74 240.1 74.5 10 13 4.2e-08 3.4e-05 24.0 3.1 1 23 493 515 493 515 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF300-201 - 604 8.5e-74 240.1 74.5 11 13 7.6e-07 0.00062 20.1 0.7 1 23 521 543 521 543 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF300-201 - 604 8.5e-74 240.1 74.5 12 13 1.8e-08 1.4e-05 25.2 0.1 1 23 549 571 549 571 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF300-201 - 604 8.5e-74 240.1 74.5 13 13 3e-09 2.4e-06 27.7 0.1 1 23 577 599 577 599 0.99 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZNF300-201 - 604 1.6e-37 124.9 77.7 1 13 1.7 1.4e+03 0.6 0.0 5 17 245 257 244 261 0.84 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF300-201 - 604 1.6e-37 124.9 77.7 2 13 0.0018 1.5 9.9 0.9 2 23 270 291 269 292 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF300-201 - 604 1.6e-37 124.9 77.7 3 13 0.00024 0.19 12.6 0.8 3 23 299 319 297 320 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF300-201 - 604 1.6e-37 124.9 77.7 4 13 9.3e-05 0.075 13.9 0.3 3 23 327 347 325 348 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF300-201 - 604 1.6e-37 124.9 77.7 5 13 2.5e-05 0.02 15.7 0.2 1 23 353 375 353 376 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF300-201 - 604 1.6e-37 124.9 77.7 6 13 1.7e-05 0.014 16.2 0.8 1 23 381 403 381 404 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF300-201 - 604 1.6e-37 124.9 77.7 7 13 9.2e-05 0.075 13.9 2.2 1 23 409 431 409 432 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF300-201 - 604 1.6e-37 124.9 77.7 8 13 8.5e-05 0.07 14.0 0.3 1 23 437 459 437 460 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF300-201 - 604 1.6e-37 124.9 77.7 9 13 5.4e-07 0.00044 20.9 0.6 1 23 465 487 465 488 0.97 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF300-201 - 604 1.6e-37 124.9 77.7 10 13 4.8e-05 0.039 14.8 2.9 1 23 493 515 493 516 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF300-201 - 604 1.6e-37 124.9 77.7 11 13 8e-05 0.066 14.1 0.6 1 23 521 543 521 544 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF300-201 - 604 1.6e-37 124.9 77.7 12 13 0.00022 0.18 12.7 0.1 1 23 549 571 549 572 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF300-201 - 604 1.6e-37 124.9 77.7 13 13 5.6e-05 0.046 14.6 0.2 1 23 577 599 577 600 0.96 C2H2-type zinc finger KRAB PF01352.27 42 ZNF300-201 - 604 7.4e-27 92.7 0.6 1 1 1.9e-29 1.5e-26 91.7 0.6 1 42 7 48 7 48 0.98 KRAB box zf-C2H2_6 PF13912.6 27 ZNF300-201 - 604 3.4e-11 42.8 72.3 1 13 0.31 2.6e+02 1.8 0.0 6 18 245 257 244 258 0.87 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF300-201 - 604 3.4e-11 42.8 72.3 2 13 0.48 3.9e+02 1.2 0.1 4 12 271 279 270 291 0.85 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF300-201 - 604 3.4e-11 42.8 72.3 3 13 2.9 2.4e+03 -1.3 0.2 3 12 298 307 297 307 0.80 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF300-201 - 604 3.4e-11 42.8 72.3 4 13 0.0031 2.6 8.2 0.3 2 17 325 340 325 349 0.75 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF300-201 - 604 3.4e-11 42.8 72.3 5 13 0.0008 0.65 10.1 0.7 2 12 353 363 353 364 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF300-201 - 604 3.4e-11 42.8 72.3 6 13 0.0059 4.8 7.3 0.5 2 12 381 391 381 404 0.86 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF300-201 - 604 3.4e-11 42.8 72.3 7 13 0.0046 3.7 7.6 1.6 2 11 409 418 409 431 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF300-201 - 604 3.4e-11 42.8 72.3 8 13 0.0022 1.8 8.7 0.3 2 20 437 455 437 456 0.97 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF300-201 - 604 3.4e-11 42.8 72.3 9 13 2.4e-05 0.02 14.9 0.7 2 24 465 487 465 490 0.89 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF300-201 - 604 3.4e-11 42.8 72.3 10 13 0.0072 5.9 7.0 2.5 2 11 493 502 493 516 0.82 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF300-201 - 604 3.4e-11 42.8 72.3 11 13 0.0014 1.1 9.3 0.3 2 12 521 531 521 543 0.88 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF300-201 - 604 3.4e-11 42.8 72.3 12 13 0.0092 7.5 6.7 0.3 2 12 549 559 549 561 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF300-201 - 604 3.4e-11 42.8 72.3 13 13 0.061 50 4.1 0.1 2 11 577 586 577 586 0.94 C2H2-type zinc finger Zn-ribbon_8 PF09723.10 40 ZNF300-201 - 604 1.9e-10 40.7 62.8 1 11 0.041 33 4.7 0.5 10 38 245 280 244 282 0.72 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF300-201 - 604 1.9e-10 40.7 62.8 2 11 9.2e-05 0.075 13.2 2.4 6 35 297 333 295 338 0.88 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF300-201 - 604 1.9e-10 40.7 62.8 3 11 0.00039 0.32 11.2 4.8 6 35 325 361 323 365 0.89 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF300-201 - 604 1.9e-10 40.7 62.8 4 11 3.4e-05 0.028 14.5 4.1 6 35 353 389 352 394 0.90 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF300-201 - 604 1.9e-10 40.7 62.8 5 11 0.0042 3.4 7.9 8.8 6 34 381 416 380 421 0.84 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF300-201 - 604 1.9e-10 40.7 62.8 6 11 0.043 35 4.6 8.6 6 38 409 448 408 450 0.81 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF300-201 - 604 1.9e-10 40.7 62.8 7 11 0.0068 5.5 7.2 6.5 6 38 437 476 436 476 0.84 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF300-201 - 604 1.9e-10 40.7 62.8 8 11 0.00014 0.11 12.6 6.3 6 34 465 500 464 506 0.87 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF300-201 - 604 1.9e-10 40.7 62.8 9 11 0.0011 0.89 9.7 5.1 6 35 493 529 492 534 0.89 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF300-201 - 604 1.9e-10 40.7 62.8 10 11 0.00011 0.089 12.9 1.9 6 35 521 557 520 562 0.89 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF300-201 - 604 1.9e-10 40.7 62.8 11 11 0.00028 0.22 11.6 0.6 6 34 549 584 548 590 0.88 Zinc ribbon domain C1_4 PF07975.12 55 ZNF300-201 - 604 1.1e-09 38.4 49.2 1 10 0.0021 1.7 8.9 1.2 2 48 271 319 270 321 0.83 TFIIH C1-like domain C1_4 PF07975.12 55 ZNF300-201 - 604 1.1e-09 38.4 49.2 2 10 0.0016 1.3 9.3 1.8 2 49 299 348 298 351 0.86 TFIIH C1-like domain C1_4 PF07975.12 55 ZNF300-201 - 604 1.1e-09 38.4 49.2 3 10 0.0013 1.1 9.6 0.8 2 49 327 376 326 378 0.85 TFIIH C1-like domain C1_4 PF07975.12 55 ZNF300-201 - 604 1.1e-09 38.4 49.2 4 10 0.0035 2.9 8.2 1.0 2 49 355 404 354 406 0.79 TFIIH C1-like domain C1_4 PF07975.12 55 ZNF300-201 - 604 1.1e-09 38.4 49.2 5 10 0.00048 0.39 11.0 5.5 2 49 383 432 382 434 0.84 TFIIH C1-like domain C1_4 PF07975.12 55 ZNF300-201 - 604 1.1e-09 38.4 49.2 6 10 0.042 34 4.8 0.2 24 48 435 459 428 461 0.83 TFIIH C1-like domain C1_4 PF07975.12 55 ZNF300-201 - 604 1.1e-09 38.4 49.2 7 10 0.00089 0.73 10.1 1.8 1 49 438 488 438 490 0.88 TFIIH C1-like domain C1_4 PF07975.12 55 ZNF300-201 - 604 1.1e-09 38.4 49.2 8 10 0.0013 1 9.6 4.7 1 49 466 516 466 518 0.82 TFIIH C1-like domain C1_4 PF07975.12 55 ZNF300-201 - 604 1.1e-09 38.4 49.2 9 10 0.00048 0.39 11.0 0.4 2 49 523 572 522 574 0.88 TFIIH C1-like domain C1_4 PF07975.12 55 ZNF300-201 - 604 1.1e-09 38.4 49.2 10 10 0.18 1.4e+02 2.8 0.1 26 49 577 600 572 602 0.87 TFIIH C1-like domain # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF300-201.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF300-201.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF300-201.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF300-201.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF300-201.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:03:29 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZNF300-202 - 604 2.9e-88 286.7 66.2 1 13 0.29 2.4e+02 2.4 1.1 10 25 264 279 260 280 0.82 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF300-202 - 604 2.9e-88 286.7 66.2 2 13 5.8e-09 4.7e-06 26.8 0.1 4 25 286 307 283 308 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF300-202 - 604 2.9e-88 286.7 66.2 3 13 3.6e-11 2.9e-08 33.8 0.5 1 25 311 335 311 336 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF300-202 - 604 2.9e-88 286.7 66.2 4 13 9.7e-12 7.9e-09 35.6 0.1 5 25 343 363 339 364 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF300-202 - 604 2.9e-88 286.7 66.2 5 13 9.4e-11 7.6e-08 32.4 0.1 5 25 371 391 368 392 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF300-202 - 604 2.9e-88 286.7 66.2 6 13 3.2e-08 2.6e-05 24.4 1.0 5 24 399 418 396 418 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF300-202 - 604 2.9e-88 286.7 66.2 7 13 7.8e-09 6.3e-06 26.4 0.8 4 25 426 447 423 448 0.90 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF300-202 - 604 2.9e-88 286.7 66.2 8 13 2.5e-10 2.1e-07 31.1 0.3 3 25 453 475 451 476 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF300-202 - 604 2.9e-88 286.7 66.2 9 13 1.3e-10 1e-07 32.0 0.6 5 24 483 502 480 502 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF300-202 - 604 2.9e-88 286.7 66.2 10 13 9.1e-09 7.4e-06 26.2 0.3 4 25 510 531 507 532 0.90 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF300-202 - 604 2.9e-88 286.7 66.2 11 13 4.4e-08 3.6e-05 24.0 0.4 5 25 539 559 535 560 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF300-202 - 604 2.9e-88 286.7 66.2 12 13 3.7e-10 3e-07 30.5 0.0 1 24 563 586 563 588 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF300-202 - 604 2.9e-88 286.7 66.2 13 13 0.23 1.8e+02 2.8 0.1 2 13 592 603 591 604 0.86 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZNF300-202 - 604 8.6e-74 240.1 74.5 1 13 2.6 2.1e+03 -0.5 0.0 5 16 245 256 244 258 0.83 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF300-202 - 604 8.6e-74 240.1 74.5 2 13 1.1e-07 8.6e-05 22.8 0.6 2 23 270 291 269 291 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF300-202 - 604 8.6e-74 240.1 74.5 3 13 1.7e-07 0.00014 22.1 0.6 1 23 297 319 297 319 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF300-202 - 604 8.6e-74 240.1 74.5 4 13 9.5e-09 7.7e-06 26.1 0.2 1 23 325 347 325 347 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF300-202 - 604 8.6e-74 240.1 74.5 5 13 4.6e-08 3.7e-05 23.9 0.1 1 23 353 375 353 375 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF300-202 - 604 8.6e-74 240.1 74.5 6 13 4.7e-08 3.8e-05 23.9 0.8 1 23 381 403 381 403 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF300-202 - 604 8.6e-74 240.1 74.5 7 13 2.9e-07 0.00024 21.4 2.3 1 23 409 431 409 431 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF300-202 - 604 8.6e-74 240.1 74.5 8 13 2.1e-06 0.0017 18.7 0.2 1 23 437 459 437 459 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF300-202 - 604 8.6e-74 240.1 74.5 9 13 3.8e-10 3.1e-07 30.5 0.9 1 23 465 487 465 487 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF300-202 - 604 8.6e-74 240.1 74.5 10 13 4.2e-08 3.4e-05 24.0 3.1 1 23 493 515 493 515 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF300-202 - 604 8.6e-74 240.1 74.5 11 13 7.6e-07 0.00062 20.1 0.7 1 23 521 543 521 543 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF300-202 - 604 8.6e-74 240.1 74.5 12 13 1.8e-08 1.4e-05 25.2 0.1 1 23 549 571 549 571 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF300-202 - 604 8.6e-74 240.1 74.5 13 13 3e-09 2.4e-06 27.7 0.1 1 23 577 599 577 599 0.99 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZNF300-202 - 604 1.7e-37 124.9 77.7 1 13 1.7 1.4e+03 0.6 0.0 5 17 245 257 244 261 0.84 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF300-202 - 604 1.7e-37 124.9 77.7 2 13 0.0018 1.5 9.9 0.9 2 23 270 291 269 292 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF300-202 - 604 1.7e-37 124.9 77.7 3 13 0.00024 0.19 12.6 0.8 3 23 299 319 297 320 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF300-202 - 604 1.7e-37 124.9 77.7 4 13 9.3e-05 0.075 13.9 0.3 3 23 327 347 325 348 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF300-202 - 604 1.7e-37 124.9 77.7 5 13 2.5e-05 0.02 15.7 0.2 1 23 353 375 353 376 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF300-202 - 604 1.7e-37 124.9 77.7 6 13 1.7e-05 0.014 16.2 0.8 1 23 381 403 381 404 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF300-202 - 604 1.7e-37 124.9 77.7 7 13 9.2e-05 0.075 13.9 2.2 1 23 409 431 409 432 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF300-202 - 604 1.7e-37 124.9 77.7 8 13 8.5e-05 0.07 14.0 0.3 1 23 437 459 437 460 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF300-202 - 604 1.7e-37 124.9 77.7 9 13 5.4e-07 0.00044 20.9 0.6 1 23 465 487 465 488 0.97 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF300-202 - 604 1.7e-37 124.9 77.7 10 13 4.8e-05 0.039 14.8 2.9 1 23 493 515 493 516 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF300-202 - 604 1.7e-37 124.9 77.7 11 13 8e-05 0.066 14.1 0.6 1 23 521 543 521 544 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF300-202 - 604 1.7e-37 124.9 77.7 12 13 0.00022 0.18 12.7 0.1 1 23 549 571 549 572 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF300-202 - 604 1.7e-37 124.9 77.7 13 13 5.6e-05 0.046 14.6 0.2 1 23 577 599 577 600 0.96 C2H2-type zinc finger KRAB PF01352.27 42 ZNF300-202 - 604 7.4e-27 92.7 0.6 1 1 1.9e-29 1.5e-26 91.7 0.6 1 42 7 48 7 48 0.98 KRAB box zf-C2H2_6 PF13912.6 27 ZNF300-202 - 604 3.4e-11 42.8 72.3 1 13 0.31 2.6e+02 1.8 0.0 6 18 245 257 244 258 0.87 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF300-202 - 604 3.4e-11 42.8 72.3 2 13 0.48 3.9e+02 1.2 0.1 4 12 271 279 270 291 0.85 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF300-202 - 604 3.4e-11 42.8 72.3 3 13 2.9 2.4e+03 -1.3 0.2 3 12 298 307 297 307 0.80 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF300-202 - 604 3.4e-11 42.8 72.3 4 13 0.0031 2.6 8.2 0.3 2 17 325 340 325 349 0.75 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF300-202 - 604 3.4e-11 42.8 72.3 5 13 0.0008 0.65 10.1 0.7 2 12 353 363 353 364 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF300-202 - 604 3.4e-11 42.8 72.3 6 13 0.0059 4.8 7.3 0.5 2 12 381 391 381 404 0.86 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF300-202 - 604 3.4e-11 42.8 72.3 7 13 0.0046 3.7 7.6 1.6 2 11 409 418 409 431 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF300-202 - 604 3.4e-11 42.8 72.3 8 13 0.0022 1.8 8.7 0.3 2 20 437 455 437 456 0.97 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF300-202 - 604 3.4e-11 42.8 72.3 9 13 2.4e-05 0.02 14.9 0.7 2 24 465 487 465 490 0.89 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF300-202 - 604 3.4e-11 42.8 72.3 10 13 0.0072 5.9 7.0 2.5 2 11 493 502 493 516 0.82 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF300-202 - 604 3.4e-11 42.8 72.3 11 13 0.0014 1.1 9.3 0.3 2 12 521 531 521 543 0.88 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF300-202 - 604 3.4e-11 42.8 72.3 12 13 0.0092 7.5 6.7 0.3 2 12 549 559 549 561 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF300-202 - 604 3.4e-11 42.8 72.3 13 13 0.061 50 4.1 0.1 2 11 577 586 577 586 0.94 C2H2-type zinc finger Zn-ribbon_8 PF09723.10 40 ZNF300-202 - 604 1.9e-10 40.7 62.8 1 11 0.041 33 4.7 0.5 10 38 245 280 244 282 0.72 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF300-202 - 604 1.9e-10 40.7 62.8 2 11 9.2e-05 0.075 13.2 2.4 6 35 297 333 295 338 0.88 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF300-202 - 604 1.9e-10 40.7 62.8 3 11 0.00039 0.32 11.2 4.8 6 35 325 361 323 365 0.89 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF300-202 - 604 1.9e-10 40.7 62.8 4 11 3.4e-05 0.028 14.5 4.1 6 35 353 389 352 394 0.90 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF300-202 - 604 1.9e-10 40.7 62.8 5 11 0.0042 3.4 7.9 8.8 6 34 381 416 380 421 0.84 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF300-202 - 604 1.9e-10 40.7 62.8 6 11 0.043 35 4.6 8.6 6 38 409 448 408 450 0.81 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF300-202 - 604 1.9e-10 40.7 62.8 7 11 0.0068 5.5 7.2 6.5 6 38 437 476 436 476 0.84 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF300-202 - 604 1.9e-10 40.7 62.8 8 11 0.00014 0.11 12.6 6.3 6 34 465 500 464 506 0.87 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF300-202 - 604 1.9e-10 40.7 62.8 9 11 0.0011 0.89 9.7 5.1 6 35 493 529 492 534 0.89 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF300-202 - 604 1.9e-10 40.7 62.8 10 11 0.00011 0.089 12.9 1.9 6 35 521 557 520 562 0.89 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF300-202 - 604 1.9e-10 40.7 62.8 11 11 0.00028 0.22 11.6 0.6 6 34 549 584 548 590 0.88 Zinc ribbon domain C1_4 PF07975.12 55 ZNF300-202 - 604 1.1e-09 38.4 49.2 1 10 0.0021 1.7 8.9 1.2 2 48 271 319 270 321 0.83 TFIIH C1-like domain C1_4 PF07975.12 55 ZNF300-202 - 604 1.1e-09 38.4 49.2 2 10 0.0016 1.3 9.3 1.8 2 49 299 348 298 351 0.86 TFIIH C1-like domain C1_4 PF07975.12 55 ZNF300-202 - 604 1.1e-09 38.4 49.2 3 10 0.0013 1.1 9.6 0.8 2 49 327 376 326 378 0.85 TFIIH C1-like domain C1_4 PF07975.12 55 ZNF300-202 - 604 1.1e-09 38.4 49.2 4 10 0.0035 2.9 8.2 1.0 2 49 355 404 354 406 0.79 TFIIH C1-like domain C1_4 PF07975.12 55 ZNF300-202 - 604 1.1e-09 38.4 49.2 5 10 0.00048 0.39 11.0 5.5 2 49 383 432 382 434 0.84 TFIIH C1-like domain C1_4 PF07975.12 55 ZNF300-202 - 604 1.1e-09 38.4 49.2 6 10 0.042 34 4.8 0.2 24 48 435 459 428 461 0.83 TFIIH C1-like domain C1_4 PF07975.12 55 ZNF300-202 - 604 1.1e-09 38.4 49.2 7 10 0.00089 0.73 10.1 1.8 1 49 438 488 438 490 0.88 TFIIH C1-like domain C1_4 PF07975.12 55 ZNF300-202 - 604 1.1e-09 38.4 49.2 8 10 0.0013 1 9.6 4.7 1 49 466 516 466 518 0.82 TFIIH C1-like domain C1_4 PF07975.12 55 ZNF300-202 - 604 1.1e-09 38.4 49.2 9 10 0.00048 0.39 11.0 0.4 2 49 523 572 522 574 0.88 TFIIH C1-like domain C1_4 PF07975.12 55 ZNF300-202 - 604 1.1e-09 38.4 49.2 10 10 0.18 1.4e+02 2.8 0.1 26 49 577 600 572 602 0.87 TFIIH C1-like domain # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF300-202.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF300-202.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF300-202.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF300-202.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF300-202.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:03:30 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZNF300-203 - 568 1.2e-88 287.9 66.2 1 13 0.29 2.2e+02 2.5 1.1 10 25 228 243 224 244 0.82 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF300-203 - 568 1.2e-88 287.9 66.2 2 13 5.7e-09 4.4e-06 26.9 0.1 4 25 250 271 247 272 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF300-203 - 568 1.2e-88 287.9 66.2 3 13 3.5e-11 2.7e-08 33.9 0.5 1 25 275 299 275 300 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF300-203 - 568 1.2e-88 287.9 66.2 4 13 9.4e-12 7.3e-09 35.7 0.1 5 25 307 327 303 328 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF300-203 - 568 1.2e-88 287.9 66.2 5 13 9.1e-11 7.1e-08 32.5 0.1 5 25 335 355 332 356 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF300-203 - 568 1.2e-88 287.9 66.2 6 13 3.2e-08 2.5e-05 24.5 1.0 5 24 363 382 360 382 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF300-203 - 568 1.2e-88 287.9 66.2 7 13 7.6e-09 5.9e-06 26.5 0.8 4 25 390 411 387 412 0.90 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF300-203 - 568 1.2e-88 287.9 66.2 8 13 2.5e-10 1.9e-07 31.2 0.3 3 25 417 439 415 440 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF300-203 - 568 1.2e-88 287.9 66.2 9 13 1.2e-10 9.7e-08 32.1 0.6 5 24 447 466 444 466 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF300-203 - 568 1.2e-88 287.9 66.2 10 13 8.8e-09 6.9e-06 26.3 0.3 4 25 474 495 471 496 0.90 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF300-203 - 568 1.2e-88 287.9 66.2 11 13 4.3e-08 3.3e-05 24.1 0.4 5 25 503 523 499 524 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF300-203 - 568 1.2e-88 287.9 66.2 12 13 3.6e-10 2.8e-07 30.6 0.0 1 24 527 550 527 552 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF300-203 - 568 1.2e-88 287.9 66.2 13 13 0.22 1.7e+02 2.9 0.1 2 13 556 567 555 568 0.86 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZNF300-203 - 568 3.5e-74 241.3 74.5 1 13 2.5 2e+03 -0.4 0.0 5 16 209 220 208 222 0.83 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF300-203 - 568 3.5e-74 241.3 74.5 2 13 1e-07 8e-05 22.9 0.6 2 23 234 255 233 255 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF300-203 - 568 3.5e-74 241.3 74.5 3 13 1.7e-07 0.00013 22.2 0.6 1 23 261 283 261 283 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF300-203 - 568 3.5e-74 241.3 74.5 4 13 9.2e-09 7.2e-06 26.2 0.2 1 23 289 311 289 311 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF300-203 - 568 3.5e-74 241.3 74.5 5 13 4.5e-08 3.5e-05 24.0 0.1 1 23 317 339 317 339 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF300-203 - 568 3.5e-74 241.3 74.5 6 13 4.6e-08 3.6e-05 24.0 0.8 1 23 345 367 345 367 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF300-203 - 568 3.5e-74 241.3 74.5 7 13 2.8e-07 0.00022 21.5 2.3 1 23 373 395 373 395 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF300-203 - 568 3.5e-74 241.3 74.5 8 13 2.1e-06 0.0016 18.8 0.2 1 23 401 423 401 423 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF300-203 - 568 3.5e-74 241.3 74.5 9 13 3.7e-10 2.8e-07 30.6 0.9 1 23 429 451 429 451 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF300-203 - 568 3.5e-74 241.3 74.5 10 13 4.1e-08 3.2e-05 24.1 3.1 1 23 457 479 457 479 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF300-203 - 568 3.5e-74 241.3 74.5 11 13 7.4e-07 0.00058 20.2 0.7 1 23 485 507 485 507 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF300-203 - 568 3.5e-74 241.3 74.5 12 13 1.7e-08 1.3e-05 25.3 0.1 1 23 513 535 513 535 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF300-203 - 568 3.5e-74 241.3 74.5 13 13 2.9e-09 2.2e-06 27.8 0.1 1 23 541 563 541 563 0.99 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZNF300-203 - 568 6.6e-38 126.1 77.7 1 13 1.6 1.3e+03 0.7 0.0 5 17 209 221 208 225 0.84 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF300-203 - 568 6.6e-38 126.1 77.7 2 13 0.0017 1.4 10.0 0.9 2 23 234 255 233 256 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF300-203 - 568 6.6e-38 126.1 77.7 3 13 0.00023 0.18 12.7 0.8 3 23 263 283 261 284 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF300-203 - 568 6.6e-38 126.1 77.7 4 13 9e-05 0.07 14.0 0.3 3 23 291 311 289 312 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF300-203 - 568 6.6e-38 126.1 77.7 5 13 2.4e-05 0.019 15.8 0.2 1 23 317 339 317 340 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF300-203 - 568 6.6e-38 126.1 77.7 6 13 1.7e-05 0.013 16.3 0.8 1 23 345 367 345 368 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF300-203 - 568 6.6e-38 126.1 77.7 7 13 8.9e-05 0.07 14.0 2.2 1 23 373 395 373 396 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF300-203 - 568 6.6e-38 126.1 77.7 8 13 8.3e-05 0.065 14.1 0.3 1 23 401 423 401 424 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF300-203 - 568 6.6e-38 126.1 77.7 9 13 5.3e-07 0.00041 21.0 0.6 1 23 429 451 429 452 0.97 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF300-203 - 568 6.6e-38 126.1 77.7 10 13 4.7e-05 0.037 14.9 2.9 1 23 457 479 457 480 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF300-203 - 568 6.6e-38 126.1 77.7 11 13 7.8e-05 0.061 14.2 0.6 1 23 485 507 485 508 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF300-203 - 568 6.6e-38 126.1 77.7 12 13 0.00022 0.17 12.8 0.1 1 23 513 535 513 536 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF300-203 - 568 6.6e-38 126.1 77.7 13 13 5.4e-05 0.042 14.7 0.2 1 23 541 563 541 564 0.96 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF300-203 - 568 1.4e-11 44.1 72.3 1 13 0.31 2.4e+02 1.9 0.0 6 18 209 221 208 222 0.87 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF300-203 - 568 1.4e-11 44.1 72.3 2 13 0.47 3.7e+02 1.3 0.1 4 12 235 243 234 255 0.85 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF300-203 - 568 1.4e-11 44.1 72.3 3 13 2.9 2.2e+03 -1.2 0.2 3 12 262 271 261 271 0.80 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF300-203 - 568 1.4e-11 44.1 72.3 4 13 0.0031 2.4 8.3 0.3 2 17 289 304 289 313 0.75 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF300-203 - 568 1.4e-11 44.1 72.3 5 13 0.00078 0.61 10.2 0.7 2 12 317 327 317 328 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF300-203 - 568 1.4e-11 44.1 72.3 6 13 0.0058 4.5 7.4 0.5 2 12 345 355 345 368 0.86 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF300-203 - 568 1.4e-11 44.1 72.3 7 13 0.0045 3.5 7.7 1.6 2 11 373 382 373 395 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF300-203 - 568 1.4e-11 44.1 72.3 8 13 0.0021 1.7 8.8 0.3 2 20 401 419 401 420 0.97 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF300-203 - 568 1.4e-11 44.1 72.3 9 13 2.4e-05 0.019 15.0 0.7 2 24 429 451 429 454 0.89 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF300-203 - 568 1.4e-11 44.1 72.3 10 13 0.007 5.5 7.1 2.5 2 11 457 466 457 480 0.82 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF300-203 - 568 1.4e-11 44.1 72.3 11 13 0.0014 1.1 9.4 0.3 2 12 485 495 485 507 0.88 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF300-203 - 568 1.4e-11 44.1 72.3 12 13 0.009 7 6.8 0.3 2 12 513 523 513 525 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF300-203 - 568 1.4e-11 44.1 72.3 13 13 0.06 46 4.2 0.1 2 11 541 550 541 550 0.94 C2H2-type zinc finger Zn-ribbon_8 PF09723.10 40 ZNF300-203 - 568 1.1e-10 41.4 62.8 1 12 0.039 31 4.8 0.5 10 38 209 244 208 246 0.72 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF300-203 - 568 1.1e-10 41.4 62.8 2 12 0.0078 6 7.1 3.1 8 36 235 270 222 274 0.88 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF300-203 - 568 1.1e-10 41.4 62.8 3 12 7.9e-05 0.062 13.4 2.2 6 35 261 297 260 302 0.88 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF300-203 - 568 1.1e-10 41.4 62.8 4 12 0.0004 0.31 11.2 4.9 6 35 289 325 287 329 0.89 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF300-203 - 568 1.1e-10 41.4 62.8 5 12 4.5e-05 0.035 14.2 4.5 6 35 317 353 315 357 0.90 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF300-203 - 568 1.1e-10 41.4 62.8 6 12 0.0044 3.4 7.9 9.0 6 34 345 380 343 386 0.84 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF300-203 - 568 1.1e-10 41.4 62.8 7 12 0.04 31 4.8 8.5 6 38 373 412 372 414 0.81 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF300-203 - 568 1.1e-10 41.4 62.8 8 12 0.0049 3.8 7.7 6.7 6 38 401 440 399 441 0.85 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF300-203 - 568 1.1e-10 41.4 62.8 9 12 0.00015 0.12 12.6 6.5 6 34 429 464 427 470 0.87 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF300-203 - 568 1.1e-10 41.4 62.8 10 12 0.001 0.81 9.9 5.1 6 35 457 493 456 498 0.89 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF300-203 - 568 1.1e-10 41.4 62.8 11 12 0.0001 0.082 13.0 1.8 6 35 485 521 484 526 0.89 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF300-203 - 568 1.1e-10 41.4 62.8 12 12 0.00028 0.22 11.7 0.6 6 34 513 548 512 553 0.88 Zinc ribbon domain C1_4 PF07975.12 55 ZNF300-203 - 568 7.9e-10 38.8 49.7 1 10 0.16 1.2e+02 3.0 0.2 18 49 225 256 210 258 0.72 TFIIH C1-like domain C1_4 PF07975.12 55 ZNF300-203 - 568 7.9e-10 38.8 49.7 2 10 0.002 1.6 9.0 1.3 2 48 235 283 234 286 0.83 TFIIH C1-like domain C1_4 PF07975.12 55 ZNF300-203 - 568 7.9e-10 38.8 49.7 3 10 0.0016 1.3 9.3 1.8 2 49 263 312 262 314 0.85 TFIIH C1-like domain C1_4 PF07975.12 55 ZNF300-203 - 568 7.9e-10 38.8 49.7 4 10 0.0014 1.1 9.5 0.9 2 49 291 340 290 342 0.85 TFIIH C1-like domain C1_4 PF07975.12 55 ZNF300-203 - 568 7.9e-10 38.8 49.7 5 10 0.0036 2.8 8.2 1.1 2 49 319 368 318 370 0.79 TFIIH C1-like domain C1_4 PF07975.12 55 ZNF300-203 - 568 7.9e-10 38.8 49.7 6 10 0.00052 0.41 10.9 5.7 2 49 347 396 346 398 0.84 TFIIH C1-like domain C1_4 PF07975.12 55 ZNF300-203 - 568 7.9e-10 38.8 49.7 7 10 0.00078 0.61 10.4 1.7 1 49 402 452 402 454 0.88 TFIIH C1-like domain C1_4 PF07975.12 55 ZNF300-203 - 568 7.9e-10 38.8 49.7 8 10 0.0012 0.97 9.7 4.7 1 49 430 480 430 482 0.82 TFIIH C1-like domain C1_4 PF07975.12 55 ZNF300-203 - 568 7.9e-10 38.8 49.7 9 10 0.00047 0.37 11.1 0.5 2 49 487 536 486 538 0.88 TFIIH C1-like domain C1_4 PF07975.12 55 ZNF300-203 - 568 7.9e-10 38.8 49.7 10 10 0.17 1.3e+02 2.9 0.1 26 49 541 564 536 566 0.87 TFIIH C1-like domain # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF300-203.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF300-203.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF300-203.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF300-203.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF300-203.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:03:31 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF300-204.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF300-204.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF300-204.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF300-204.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF300-204.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:03:31 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZNF300-205 - 620 4.4e-88 286.1 66.2 1 13 0.3 2.5e+02 2.4 1.1 10 25 280 295 276 296 0.82 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF300-205 - 620 4.4e-88 286.1 66.2 2 13 6e-09 4.9e-06 26.7 0.1 4 25 302 323 299 324 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF300-205 - 620 4.4e-88 286.1 66.2 3 13 3.7e-11 3e-08 33.7 0.5 1 25 327 351 327 352 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF300-205 - 620 4.4e-88 286.1 66.2 4 13 1e-11 8.1e-09 35.5 0.1 5 25 359 379 355 380 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF300-205 - 620 4.4e-88 286.1 66.2 5 13 9.7e-11 7.9e-08 32.4 0.1 5 25 387 407 384 408 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF300-205 - 620 4.4e-88 286.1 66.2 6 13 3.3e-08 2.7e-05 24.4 1.0 5 24 415 434 412 434 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF300-205 - 620 4.4e-88 286.1 66.2 7 13 8e-09 6.5e-06 26.3 0.8 4 25 442 463 439 464 0.90 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF300-205 - 620 4.4e-88 286.1 66.2 8 13 2.6e-10 2.1e-07 31.0 0.3 3 25 469 491 467 492 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF300-205 - 620 4.4e-88 286.1 66.2 9 13 1.3e-10 1.1e-07 32.0 0.6 5 24 499 518 496 518 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF300-205 - 620 4.4e-88 286.1 66.2 10 13 9.4e-09 7.6e-06 26.1 0.3 4 25 526 547 523 548 0.90 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF300-205 - 620 4.4e-88 286.1 66.2 11 13 4.5e-08 3.7e-05 24.0 0.4 5 25 555 575 551 576 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF300-205 - 620 4.4e-88 286.1 66.2 12 13 3.8e-10 3.1e-07 30.5 0.0 1 24 579 602 579 604 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF300-205 - 620 4.4e-88 286.1 66.2 13 13 0.23 1.9e+02 2.7 0.1 2 13 608 619 607 620 0.86 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZNF300-205 - 620 1.2e-73 239.6 74.5 1 13 2.6 2.2e+03 -0.5 0.0 5 16 261 272 260 274 0.83 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF300-205 - 620 1.2e-73 239.6 74.5 2 13 1.1e-07 8.9e-05 22.7 0.6 2 23 286 307 285 307 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF300-205 - 620 1.2e-73 239.6 74.5 3 13 1.8e-07 0.00015 22.1 0.6 1 23 313 335 313 335 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF300-205 - 620 1.2e-73 239.6 74.5 4 13 9.8e-09 8e-06 26.0 0.2 1 23 341 363 341 363 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF300-205 - 620 1.2e-73 239.6 74.5 5 13 4.7e-08 3.8e-05 23.9 0.1 1 23 369 391 369 391 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF300-205 - 620 1.2e-73 239.6 74.5 6 13 4.8e-08 3.9e-05 23.9 0.8 1 23 397 419 397 419 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF300-205 - 620 1.2e-73 239.6 74.5 7 13 3e-07 0.00024 21.4 2.3 1 23 425 447 425 447 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF300-205 - 620 1.2e-73 239.6 74.5 8 13 2.2e-06 0.0018 18.6 0.2 1 23 453 475 453 475 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF300-205 - 620 1.2e-73 239.6 74.5 9 13 3.9e-10 3.2e-07 30.5 0.9 1 23 481 503 481 503 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF300-205 - 620 1.2e-73 239.6 74.5 10 13 4.3e-08 3.5e-05 24.0 3.1 1 23 509 531 509 531 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF300-205 - 620 1.2e-73 239.6 74.5 11 13 7.9e-07 0.00064 20.0 0.7 1 23 537 559 537 559 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF300-205 - 620 1.2e-73 239.6 74.5 12 13 1.8e-08 1.5e-05 25.2 0.1 1 23 565 587 565 587 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF300-205 - 620 1.2e-73 239.6 74.5 13 13 3e-09 2.5e-06 27.6 0.1 1 23 593 615 593 615 0.99 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZNF300-205 - 620 2.4e-37 124.3 77.7 1 13 1.7 1.4e+03 0.6 0.0 5 17 261 273 260 277 0.84 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF300-205 - 620 2.4e-37 124.3 77.7 2 13 0.0019 1.5 9.9 0.9 2 23 286 307 285 308 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF300-205 - 620 2.4e-37 124.3 77.7 3 13 0.00025 0.2 12.6 0.8 3 23 315 335 313 336 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF300-205 - 620 2.4e-37 124.3 77.7 4 13 9.5e-05 0.078 13.9 0.3 3 23 343 363 341 364 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF300-205 - 620 2.4e-37 124.3 77.7 5 13 2.6e-05 0.021 15.6 0.2 1 23 369 391 369 392 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF300-205 - 620 2.4e-37 124.3 77.7 6 13 1.8e-05 0.014 16.1 0.8 1 23 397 419 397 420 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF300-205 - 620 2.4e-37 124.3 77.7 7 13 9.5e-05 0.077 13.9 2.2 1 23 425 447 425 448 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF300-205 - 620 2.4e-37 124.3 77.7 8 13 8.8e-05 0.072 14.0 0.3 1 23 453 475 453 476 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF300-205 - 620 2.4e-37 124.3 77.7 9 13 5.6e-07 0.00045 20.8 0.6 1 23 481 503 481 504 0.97 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF300-205 - 620 2.4e-37 124.3 77.7 10 13 5e-05 0.041 14.7 2.9 1 23 509 531 509 532 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF300-205 - 620 2.4e-37 124.3 77.7 11 13 8.3e-05 0.068 14.0 0.6 1 23 537 559 537 560 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF300-205 - 620 2.4e-37 124.3 77.7 12 13 0.00023 0.19 12.7 0.1 1 23 565 587 565 588 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF300-205 - 620 2.4e-37 124.3 77.7 13 13 5.8e-05 0.047 14.5 0.2 1 23 593 615 593 616 0.96 C2H2-type zinc finger KRAB PF01352.27 42 ZNF300-205 - 620 7.6e-27 92.7 0.6 1 1 2e-29 1.6e-26 91.7 0.6 1 42 23 64 23 64 0.98 KRAB box zf-C2H2_6 PF13912.6 27 ZNF300-205 - 620 5e-11 42.3 72.3 1 13 0.32 2.6e+02 1.8 0.0 6 18 261 273 260 274 0.87 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF300-205 - 620 5e-11 42.3 72.3 2 13 0.5 4e+02 1.2 0.1 4 12 287 295 286 307 0.85 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF300-205 - 620 5e-11 42.3 72.3 3 13 3 2.5e+03 -1.3 0.2 3 12 314 323 313 323 0.80 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF300-205 - 620 5e-11 42.3 72.3 4 13 0.0032 2.6 8.1 0.3 2 17 341 356 341 365 0.75 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF300-205 - 620 5e-11 42.3 72.3 5 13 0.00082 0.67 10.0 0.7 2 12 369 379 369 380 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF300-205 - 620 5e-11 42.3 72.3 6 13 0.0061 5 7.3 0.5 2 12 397 407 397 420 0.86 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF300-205 - 620 5e-11 42.3 72.3 7 13 0.0047 3.8 7.6 1.6 2 11 425 434 425 447 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF300-205 - 620 5e-11 42.3 72.3 8 13 0.0022 1.8 8.6 0.3 2 20 453 471 453 472 0.97 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF300-205 - 620 5e-11 42.3 72.3 9 13 2.5e-05 0.021 14.8 0.7 2 24 481 503 481 506 0.89 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF300-205 - 620 5e-11 42.3 72.3 10 13 0.0074 6.1 7.0 2.5 2 11 509 518 509 532 0.82 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF300-205 - 620 5e-11 42.3 72.3 11 13 0.0014 1.2 9.2 0.3 2 12 537 547 537 559 0.88 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF300-205 - 620 5e-11 42.3 72.3 12 13 0.0095 7.8 6.6 0.3 2 12 565 575 565 577 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF300-205 - 620 5e-11 42.3 72.3 13 13 0.063 51 4.0 0.1 2 11 593 602 593 602 0.94 C2H2-type zinc finger Zn-ribbon_8 PF09723.10 40 ZNF300-205 - 620 3.1e-10 40.0 63.1 1 11 0.041 34 4.7 0.5 10 38 261 296 260 298 0.72 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF300-205 - 620 3.1e-10 40.0 63.1 2 11 0.00085 0.7 10.1 5.6 6 35 313 349 286 354 0.91 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF300-205 - 620 3.1e-10 40.0 63.1 3 11 0.00044 0.36 11.0 5.0 6 35 341 377 340 381 0.89 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF300-205 - 620 3.1e-10 40.0 63.1 4 11 5.3e-05 0.043 13.9 4.6 6 35 369 405 367 409 0.90 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF300-205 - 620 3.1e-10 40.0 63.1 5 11 0.0046 3.7 7.7 9.0 6 34 397 432 396 438 0.84 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF300-205 - 620 3.1e-10 40.0 63.1 6 11 0.045 36 4.6 8.6 6 38 425 464 424 466 0.81 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF300-205 - 620 3.1e-10 40.0 63.1 7 11 0.0052 4.2 7.6 6.6 6 38 453 492 452 493 0.85 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF300-205 - 620 3.1e-10 40.0 63.1 8 11 0.00014 0.11 12.6 6.2 6 34 481 516 480 521 0.87 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF300-205 - 620 3.1e-10 40.0 63.1 9 11 0.0012 0.97 9.6 5.1 6 35 509 545 508 549 0.89 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF300-205 - 620 3.1e-10 40.0 63.1 10 11 0.00013 0.1 12.7 2.0 6 35 537 573 536 578 0.89 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF300-205 - 620 3.1e-10 40.0 63.1 11 11 0.00027 0.22 11.7 0.5 6 34 565 600 564 606 0.88 Zinc ribbon domain C1_4 PF07975.12 55 ZNF300-205 - 620 1.4e-09 38.0 49.2 1 10 0.0033 2.7 8.3 1.9 2 48 287 335 285 338 0.84 TFIIH C1-like domain C1_4 PF07975.12 55 ZNF300-205 - 620 1.4e-09 38.0 49.2 2 10 0.0017 1.4 9.2 1.8 2 49 315 364 314 366 0.85 TFIIH C1-like domain C1_4 PF07975.12 55 ZNF300-205 - 620 1.4e-09 38.0 49.2 3 10 0.0015 1.2 9.4 0.9 2 49 343 392 342 394 0.85 TFIIH C1-like domain C1_4 PF07975.12 55 ZNF300-205 - 620 1.4e-09 38.0 49.2 4 10 0.0037 3 8.1 1.0 2 49 371 420 370 422 0.79 TFIIH C1-like domain C1_4 PF07975.12 55 ZNF300-205 - 620 1.4e-09 38.0 49.2 5 10 0.0005 0.41 10.9 5.5 2 49 399 448 398 450 0.84 TFIIH C1-like domain C1_4 PF07975.12 55 ZNF300-205 - 620 1.4e-09 38.0 49.2 6 10 0.039 32 4.8 0.2 24 49 451 476 444 478 0.83 TFIIH C1-like domain C1_4 PF07975.12 55 ZNF300-205 - 620 1.4e-09 38.0 49.2 7 10 0.00086 0.7 10.2 1.7 1 49 454 504 454 506 0.88 TFIIH C1-like domain C1_4 PF07975.12 55 ZNF300-205 - 620 1.4e-09 38.0 49.2 8 10 0.0012 0.94 9.8 4.5 1 49 482 532 482 534 0.82 TFIIH C1-like domain C1_4 PF07975.12 55 ZNF300-205 - 620 1.4e-09 38.0 49.2 9 10 0.00051 0.42 10.9 0.5 2 49 539 588 538 590 0.88 TFIIH C1-like domain C1_4 PF07975.12 55 ZNF300-205 - 620 1.4e-09 38.0 49.2 10 10 0.18 1.5e+02 2.7 0.1 26 49 593 616 588 618 0.87 TFIIH C1-like domain # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF300-205.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF300-205.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF300-205.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF300-205.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF300-205.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:03:32 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZNF30-201 - 624 1.1e-131 424.0 124.2 1 18 2.9e-06 0.0029 18.0 0.8 4 26 138 160 136 160 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF30-201 - 624 1.1e-131 424.0 124.2 2 18 3.4e-07 0.00034 20.9 0.1 2 25 164 187 163 188 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF30-201 - 624 1.1e-131 424.0 124.2 3 18 4.4e-08 4.4e-05 23.7 0.4 2 23 192 213 191 215 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF30-201 - 624 1.1e-131 424.0 124.2 4 18 2.3e-09 2.3e-06 27.7 0.3 2 24 220 242 219 243 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF30-201 - 624 1.1e-131 424.0 124.2 5 18 4e-10 4e-07 30.2 0.7 2 26 248 272 247 272 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF30-201 - 624 1.1e-131 424.0 124.2 6 18 7e-12 6.9e-09 35.7 0.7 2 26 276 300 275 300 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF30-201 - 624 1.1e-131 424.0 124.2 7 18 1e-11 1e-08 35.2 1.1 2 25 304 327 304 327 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF30-201 - 624 1.1e-131 424.0 124.2 8 18 1.9e-11 1.9e-08 34.4 0.6 2 24 332 354 331 355 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF30-201 - 624 1.1e-131 424.0 124.2 9 18 0.00029 0.29 11.6 0.8 4 25 362 383 360 384 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF30-201 - 624 1.1e-131 424.0 124.2 10 18 8.6e-11 8.6e-08 32.3 0.5 2 26 388 412 387 412 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF30-201 - 624 1.1e-131 424.0 124.2 11 18 3e-12 3e-09 36.9 0.2 2 25 416 439 415 440 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF30-201 - 624 1.1e-131 424.0 124.2 12 18 1.4e-11 1.4e-08 34.8 0.6 2 24 444 466 443 467 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF30-201 - 624 1.1e-131 424.0 124.2 13 18 2e-09 2e-06 28.0 2.8 1 25 471 495 471 496 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF30-201 - 624 1.1e-131 424.0 124.2 14 18 5.1e-12 5.1e-09 36.2 0.8 2 26 500 524 499 524 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF30-201 - 624 1.1e-131 424.0 124.2 15 18 5.1e-12 5.1e-09 36.2 0.5 2 25 528 551 527 551 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF30-201 - 624 1.1e-131 424.0 124.2 16 18 7e-10 6.9e-07 29.4 0.4 5 24 559 578 556 579 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF30-201 - 624 1.1e-131 424.0 124.2 17 18 7.3e-11 7.2e-08 32.5 3.6 2 25 584 607 584 608 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF30-201 - 624 1.1e-131 424.0 124.2 18 18 0.26 2.6e+02 2.3 0.2 1 10 611 620 611 623 0.82 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZNF30-201 - 624 3.3e-88 285.5 106.9 1 17 2.2e-06 0.0022 18.4 2.1 2 23 150 171 150 171 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF30-201 - 624 3.3e-88 285.5 106.9 2 17 0.0017 1.7 9.3 0.0 5 23 181 199 179 199 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF30-201 - 624 3.3e-88 285.5 106.9 3 17 2.2e-05 0.022 15.2 0.4 2 23 206 227 205 227 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF30-201 - 624 3.3e-88 285.5 106.9 4 17 2.3e-05 0.023 15.1 0.2 1 23 233 255 233 255 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF30-201 - 624 3.3e-88 285.5 106.9 5 17 1.9e-07 0.00018 21.7 0.2 3 23 263 283 261 283 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF30-201 - 624 3.3e-88 285.5 106.9 6 17 6e-09 6e-06 26.4 0.2 1 23 289 311 289 311 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF30-201 - 624 3.3e-88 285.5 106.9 7 17 3.4e-08 3.4e-05 24.1 0.5 1 23 317 339 317 339 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF30-201 - 624 3.3e-88 285.5 106.9 8 17 9.1e-07 0.0009 19.6 1.4 1 23 345 367 345 367 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF30-201 - 624 3.3e-88 285.5 106.9 9 17 2.6e-07 0.00026 21.3 0.3 3 23 375 395 373 395 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF30-201 - 624 3.3e-88 285.5 106.9 10 17 3e-08 3e-05 24.2 0.2 1 23 401 423 401 423 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF30-201 - 624 3.3e-88 285.5 106.9 11 17 1.1e-08 1.1e-05 25.6 1.0 1 23 429 451 429 451 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF30-201 - 624 3.3e-88 285.5 106.9 12 17 1.7e-06 0.0017 18.7 3.0 1 23 457 479 457 479 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF30-201 - 624 3.3e-88 285.5 106.9 13 17 1.3e-08 1.3e-05 25.4 0.6 1 23 485 507 485 507 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF30-201 - 624 3.3e-88 285.5 106.9 14 17 5e-08 5e-05 23.5 0.2 1 23 513 535 513 535 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF30-201 - 624 3.3e-88 285.5 106.9 15 17 3.8e-06 0.0037 17.6 0.1 1 23 541 563 541 563 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF30-201 - 624 3.3e-88 285.5 106.9 16 17 3.4e-07 0.00034 20.9 0.5 1 23 569 591 569 591 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF30-201 - 624 3.3e-88 285.5 106.9 17 17 4.5e-09 4.5e-06 26.8 3.0 1 23 597 619 597 619 0.99 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZNF30-201 - 624 2.7e-48 158.4 108.3 1 17 0.00015 0.15 13.0 0.9 2 23 150 171 149 172 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF30-201 - 624 2.7e-48 158.4 108.3 2 17 0.94 9.3e+02 1.2 0.0 5 19 181 195 180 199 0.89 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF30-201 - 624 2.7e-48 158.4 108.3 3 17 0.00081 0.8 10.7 0.4 2 23 206 227 205 228 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF30-201 - 624 2.7e-48 158.4 108.3 4 17 0.00011 0.11 13.4 0.2 1 23 233 255 233 256 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF30-201 - 624 2.7e-48 158.4 108.3 5 17 5.4e-05 0.054 14.3 0.4 1 23 261 283 261 284 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF30-201 - 624 2.7e-48 158.4 108.3 6 17 2.3e-06 0.0022 18.7 0.4 1 23 289 311 289 312 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF30-201 - 624 2.7e-48 158.4 108.3 7 17 1.2e-05 0.012 16.4 0.5 1 23 317 339 317 340 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF30-201 - 624 2.7e-48 158.4 108.3 8 17 0.00025 0.25 12.3 1.1 1 23 345 367 345 368 0.83 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF30-201 - 624 2.7e-48 158.4 108.3 9 17 0.0011 1.1 10.3 0.4 2 19 374 391 373 395 0.88 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF30-201 - 624 2.7e-48 158.4 108.3 10 17 1.8e-05 0.018 15.8 0.3 1 23 401 423 401 424 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF30-201 - 624 2.7e-48 158.4 108.3 11 17 2.4e-05 0.023 15.5 1.1 1 23 429 451 429 452 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF30-201 - 624 2.7e-48 158.4 108.3 12 17 0.00034 0.33 11.9 2.6 1 23 457 479 457 480 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF30-201 - 624 2.7e-48 158.4 108.3 13 17 1.2e-05 0.012 16.4 0.7 1 23 485 507 485 508 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF30-201 - 624 2.7e-48 158.4 108.3 14 17 1.5e-05 0.015 16.1 0.3 1 23 513 535 513 536 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF30-201 - 624 2.7e-48 158.4 108.3 15 17 0.00038 0.38 11.7 0.1 1 23 541 563 541 564 0.91 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF30-201 - 624 2.7e-48 158.4 108.3 16 17 0.00045 0.45 11.5 0.7 1 23 569 591 569 592 0.80 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF30-201 - 624 2.7e-48 158.4 108.3 17 17 7.8e-07 0.00078 20.1 2.5 1 23 597 619 597 620 0.96 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF30-201 - 624 6.8e-28 96.1 118.5 1 18 0.2 2e+02 2.1 0.1 14 24 50 60 45 62 0.81 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF30-201 - 624 6.8e-28 96.1 118.5 2 18 0.007 7 6.8 0.7 3 18 150 165 150 171 0.76 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF30-201 - 624 6.8e-28 96.1 118.5 3 18 2.6 2.6e+03 -1.4 0.1 7 16 182 191 181 199 0.79 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF30-201 - 624 6.8e-28 96.1 118.5 4 18 0.092 91 3.2 0.3 3 10 206 213 206 227 0.88 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF30-201 - 624 6.8e-28 96.1 118.5 5 18 0.012 12 6.0 0.7 2 24 233 255 233 258 0.82 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF30-201 - 624 6.8e-28 96.1 118.5 6 18 0.0038 3.7 7.6 0.8 2 20 261 279 261 286 0.78 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF30-201 - 624 6.8e-28 96.1 118.5 7 18 0.00011 0.11 12.5 0.5 2 13 289 300 289 311 0.85 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF30-201 - 624 6.8e-28 96.1 118.5 8 18 6.1e-05 0.061 13.3 0.9 2 20 317 335 317 340 0.80 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF30-201 - 624 6.8e-28 96.1 118.5 9 18 0.0013 1.3 9.1 1.1 2 12 345 355 345 355 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF30-201 - 624 6.8e-28 96.1 118.5 10 18 0.0027 2.7 8.1 0.2 2 12 373 383 373 385 0.90 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF30-201 - 624 6.8e-28 96.1 118.5 11 18 3.6e-05 0.036 14.1 0.8 2 15 401 414 401 424 0.82 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF30-201 - 624 6.8e-28 96.1 118.5 12 18 0.00079 0.79 9.8 0.5 2 11 429 438 429 451 0.86 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF30-201 - 624 6.8e-28 96.1 118.5 13 18 9.7e-05 0.096 12.7 1.7 2 24 457 479 457 482 0.91 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF30-201 - 624 6.8e-28 96.1 118.5 14 18 7.6e-05 0.075 13.0 0.6 2 13 485 496 485 507 0.89 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF30-201 - 624 6.8e-28 96.1 118.5 15 18 2.3e-05 0.022 14.7 0.9 2 15 513 526 513 536 0.82 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF30-201 - 624 6.8e-28 96.1 118.5 16 18 0.00017 0.17 11.9 0.6 2 22 541 561 541 565 0.91 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF30-201 - 624 6.8e-28 96.1 118.5 17 18 0.00083 0.83 9.7 0.5 2 12 569 579 569 582 0.95 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF30-201 - 624 6.8e-28 96.1 118.5 18 18 2.8e-06 0.0028 17.6 2.9 2 26 597 621 597 622 0.96 C2H2-type zinc finger zf-C2H2_jaz PF12171.8 27 ZNF30-201 - 624 5e-25 87.2 57.7 1 17 8.9 8.8e+03 -2.8 0.2 19 26 55 62 52 62 0.81 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF30-201 - 624 5e-25 87.2 57.7 2 17 0.001 1 9.8 0.2 3 22 150 169 148 169 0.91 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF30-201 - 624 5e-25 87.2 57.7 3 17 0.29 2.9e+02 1.9 0.0 7 20 182 195 182 195 0.97 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF30-201 - 624 5e-25 87.2 57.7 4 17 0.0055 5.5 7.4 0.0 2 21 205 224 204 225 0.91 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF30-201 - 624 5e-25 87.2 57.7 5 17 2 2e+03 -0.7 0.1 2 11 233 242 232 243 0.88 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF30-201 - 624 5e-25 87.2 57.7 6 17 0.027 27 5.2 0.0 4 22 263 281 260 281 0.89 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF30-201 - 624 5e-25 87.2 57.7 7 17 0.0021 2.1 8.8 0.0 2 21 289 308 288 309 0.87 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF30-201 - 624 5e-25 87.2 57.7 8 17 0.057 57 4.2 0.1 2 11 317 326 316 335 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF30-201 - 624 5e-25 87.2 57.7 9 17 0.012 12 6.3 0.2 2 21 345 364 344 365 0.86 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF30-201 - 624 5e-25 87.2 57.7 10 17 0.0026 2.6 8.4 0.0 4 20 375 391 372 391 0.96 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF30-201 - 624 5e-25 87.2 57.7 11 17 0.00047 0.47 10.8 0.0 2 22 401 421 400 421 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF30-201 - 624 5e-25 87.2 57.7 12 17 3.3e-05 0.033 14.5 0.1 2 22 429 449 428 449 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF30-201 - 624 5e-25 87.2 57.7 13 17 0.05 50 4.4 0.4 2 21 457 476 456 477 0.80 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF30-201 - 624 5e-25 87.2 57.7 14 17 0.0001 0.1 12.9 0.1 2 20 485 503 484 504 0.95 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF30-201 - 624 5e-25 87.2 57.7 15 17 0.00033 0.32 11.3 0.0 2 22 513 533 512 533 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF30-201 - 624 5e-25 87.2 57.7 16 17 0.021 21 5.5 0.1 2 21 569 588 568 589 0.80 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF30-201 - 624 5e-25 87.2 57.7 17 17 0.0064 6.4 7.2 0.6 2 22 597 617 596 619 0.93 Zinc-finger double-stranded RNA-binding KRAB PF01352.27 42 ZNF30-201 - 624 1.1e-24 85.8 0.2 1 1 1.8e-27 1.8e-24 85.1 0.2 1 42 13 54 13 54 0.99 KRAB box XPA_N PF01286.18 32 ZNF30-201 - 624 2.2e-21 75.6 68.6 1 17 0.0069 6.8 6.8 0.3 2 12 149 159 148 161 0.86 XPA protein N-terminal XPA_N PF01286.18 32 ZNF30-201 - 624 2.2e-21 75.6 68.6 2 17 3.1 3.1e+03 -1.7 0.1 5 11 180 186 180 188 0.84 XPA protein N-terminal XPA_N PF01286.18 32 ZNF30-201 - 624 2.2e-21 75.6 68.6 3 17 0.0049 4.9 7.3 0.0 2 15 205 218 204 223 0.87 XPA protein N-terminal XPA_N PF01286.18 32 ZNF30-201 - 624 2.2e-21 75.6 68.6 4 17 0.031 31 4.7 0.1 3 12 234 243 232 244 0.89 XPA protein N-terminal XPA_N PF01286.18 32 ZNF30-201 - 624 2.2e-21 75.6 68.6 5 17 0.002 2 8.5 0.2 4 18 263 278 262 280 0.85 XPA protein N-terminal XPA_N PF01286.18 32 ZNF30-201 - 624 2.2e-21 75.6 68.6 6 17 0.0018 1.8 8.7 0.5 3 14 290 301 288 302 0.91 XPA protein N-terminal XPA_N PF01286.18 32 ZNF30-201 - 624 2.2e-21 75.6 68.6 7 17 0.013 13 5.9 0.2 3 12 318 327 316 328 0.88 XPA protein N-terminal XPA_N PF01286.18 32 ZNF30-201 - 624 2.2e-21 75.6 68.6 8 17 0.0027 2.7 8.1 0.2 3 14 346 357 344 363 0.79 XPA protein N-terminal XPA_N PF01286.18 32 ZNF30-201 - 624 2.2e-21 75.6 68.6 9 17 0.0095 9.5 6.4 0.0 4 18 375 390 373 391 0.79 XPA protein N-terminal XPA_N PF01286.18 32 ZNF30-201 - 624 2.2e-21 75.6 68.6 10 17 0.00074 0.74 9.9 0.1 3 18 402 418 400 420 0.82 XPA protein N-terminal XPA_N PF01286.18 32 ZNF30-201 - 624 2.2e-21 75.6 68.6 11 17 0.013 13 6.0 0.2 3 11 430 438 428 440 0.88 XPA protein N-terminal XPA_N PF01286.18 32 ZNF30-201 - 624 2.2e-21 75.6 68.6 12 17 0.013 13 5.9 0.2 3 11 458 466 456 468 0.89 XPA protein N-terminal XPA_N PF01286.18 32 ZNF30-201 - 624 2.2e-21 75.6 68.6 13 17 0.00098 0.98 9.5 0.1 3 18 486 502 484 503 0.79 XPA protein N-terminal XPA_N PF01286.18 32 ZNF30-201 - 624 2.2e-21 75.6 68.6 14 17 0.001 1 9.5 0.1 3 18 514 530 512 532 0.81 XPA protein N-terminal XPA_N PF01286.18 32 ZNF30-201 - 624 2.2e-21 75.6 68.6 15 17 0.049 49 4.1 0.1 3 12 542 551 540 552 0.88 XPA protein N-terminal XPA_N PF01286.18 32 ZNF30-201 - 624 2.2e-21 75.6 68.6 16 17 0.0016 1.6 8.9 0.1 3 19 570 587 568 590 0.86 XPA protein N-terminal XPA_N PF01286.18 32 ZNF30-201 - 624 2.2e-21 75.6 68.6 17 17 0.014 14 5.8 0.1 3 14 598 609 596 612 0.88 XPA protein N-terminal Zn-ribbon_8 PF09723.10 40 ZNF30-201 - 624 2.1e-17 63.0 93.8 1 17 2.5 2.5e+03 -1.3 0.2 10 31 105 125 104 132 0.74 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF30-201 - 624 2.1e-17 63.0 93.8 2 17 0.024 24 5.1 1.0 16 35 140 157 125 160 0.63 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF30-201 - 624 2.1e-17 63.0 93.8 3 17 0.048 48 4.2 0.4 7 16 150 159 150 171 0.83 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF30-201 - 624 2.1e-17 63.0 93.8 4 17 0.026 26 5.0 0.4 10 35 181 213 177 217 0.63 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF30-201 - 624 2.1e-17 63.0 93.8 5 17 0.0015 1.5 9.0 4.0 6 34 233 268 232 271 0.89 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF30-201 - 624 2.1e-17 63.0 93.8 6 17 0.00029 0.29 11.3 5.2 6 34 261 296 260 300 0.89 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF30-201 - 624 2.1e-17 63.0 93.8 7 17 2e-05 0.02 15.0 5.6 6 34 289 324 288 329 0.92 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF30-201 - 624 2.1e-17 63.0 93.8 8 17 1.2e-05 0.012 15.7 4.7 6 36 317 354 316 357 0.91 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF30-201 - 624 2.1e-17 63.0 93.8 9 17 2.6e-05 0.025 14.7 2.7 6 38 345 384 344 386 0.89 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF30-201 - 624 2.1e-17 63.0 93.8 10 17 8.8e-06 0.0088 16.1 3.8 6 34 401 436 400 442 0.92 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF30-201 - 624 2.1e-17 63.0 93.8 11 17 6.8e-05 0.068 13.3 5.3 6 36 429 466 428 470 0.90 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF30-201 - 624 2.1e-17 63.0 93.8 12 17 3.6e-05 0.036 14.2 5.3 6 38 457 496 456 497 0.84 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF30-201 - 624 2.1e-17 63.0 93.8 13 17 7.2e-05 0.072 13.2 5.7 6 34 485 520 482 523 0.84 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF30-201 - 624 2.1e-17 63.0 93.8 14 17 3.4e-05 0.034 14.3 4.4 6 35 513 549 512 551 0.92 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF30-201 - 624 2.1e-17 63.0 93.8 15 17 0.00017 0.17 12.1 4.4 6 35 541 577 540 579 0.88 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF30-201 - 624 2.1e-17 63.0 93.8 16 17 0.00024 0.24 11.5 4.2 6 36 569 606 568 609 0.90 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF30-201 - 624 2.1e-17 63.0 93.8 17 17 0.012 12 6.2 0.3 6 16 597 607 596 613 0.88 Zinc ribbon domain zf_UBZ PF18439.1 32 ZNF30-201 - 624 3.2e-14 52.2 63.4 1 17 0.038 38 4.0 0.2 5 14 151 160 149 168 0.77 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF30-201 - 624 3.2e-14 52.2 63.4 2 17 8.6 8.6e+03 -3.5 0.0 6 12 180 186 180 188 0.80 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF30-201 - 624 3.2e-14 52.2 63.4 3 17 0.0063 6.2 6.5 0.1 4 20 206 223 204 224 0.80 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF30-201 - 624 3.2e-14 52.2 63.4 4 17 0.012 12 5.6 0.0 3 20 233 251 231 252 0.81 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF30-201 - 624 3.2e-14 52.2 63.4 5 17 0.014 14 5.3 0.1 4 15 262 273 259 280 0.79 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF30-201 - 624 3.2e-14 52.2 63.4 6 17 0.0047 4.7 6.9 0.2 3 15 289 301 287 308 0.80 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF30-201 - 624 3.2e-14 52.2 63.4 7 17 0.0026 2.6 7.7 0.1 3 21 317 336 315 336 0.84 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF30-201 - 624 3.2e-14 52.2 63.4 8 17 0.034 34 4.1 0.1 3 14 345 356 343 361 0.81 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF30-201 - 624 3.2e-14 52.2 63.4 9 17 0.06 60 3.4 0.1 3 15 373 385 371 391 0.83 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF30-201 - 624 3.2e-14 52.2 63.4 10 17 0.0095 9.5 5.9 0.1 3 14 401 412 399 420 0.82 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF30-201 - 624 3.2e-14 52.2 63.4 11 17 0.011 11 5.7 0.3 3 20 429 447 427 448 0.76 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF30-201 - 624 3.2e-14 52.2 63.4 12 17 0.0065 6.4 6.5 0.5 3 20 457 475 455 476 0.86 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF30-201 - 624 3.2e-14 52.2 63.4 13 17 0.004 4 7.1 0.1 3 15 485 497 483 504 0.82 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF30-201 - 624 3.2e-14 52.2 63.4 14 17 0.0079 7.9 6.2 0.1 3 14 513 524 511 532 0.82 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF30-201 - 624 3.2e-14 52.2 63.4 15 17 0.043 43 3.8 0.1 3 14 541 552 539 560 0.78 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF30-201 - 624 3.2e-14 52.2 63.4 16 17 0.0077 7.7 6.2 0.1 3 21 569 588 567 588 0.85 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF30-201 - 624 3.2e-14 52.2 63.4 17 17 0.025 25 4.6 0.2 3 12 597 606 595 613 0.88 Ubiquitin-Binding Zinc Finger zinc_ribbon_15 PF17032.5 86 ZNF30-201 - 624 4.2e-08 33.8 61.5 1 9 0.33 3.2e+02 2.1 3.1 45 77 129 160 95 167 0.58 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF30-201 - 624 4.2e-08 33.8 61.5 2 9 0.012 11 6.8 0.1 38 80 177 219 168 223 0.80 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF30-201 - 624 4.2e-08 33.8 61.5 3 9 0.057 57 4.6 0.4 33 75 228 270 222 275 0.84 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF30-201 - 624 4.2e-08 33.8 61.5 4 9 0.00029 0.29 11.9 1.7 26 74 277 325 269 330 0.86 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF30-201 - 624 4.2e-08 33.8 61.5 5 9 0.0036 3.6 8.4 0.3 33 76 340 383 334 388 0.85 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF30-201 - 624 4.2e-08 33.8 61.5 6 9 0.0024 2.4 9.0 1.0 32 75 395 438 386 447 0.84 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF30-201 - 624 4.2e-08 33.8 61.5 7 9 0.00078 0.78 10.5 1.7 32 76 451 495 444 499 0.87 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF30-201 - 624 4.2e-08 33.8 61.5 8 9 0.0012 1.2 9.9 1.2 26 74 501 549 497 553 0.86 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF30-201 - 624 4.2e-08 33.8 61.5 9 9 0.0026 2.6 8.9 0.4 33 76 564 607 556 611 0.83 zinc-ribbon family zf-C2H2_11 PF16622.5 29 ZNF30-201 - 624 1.1e-07 31.5 75.2 1 17 0.015 15 5.5 0.1 6 16 150 160 147 170 0.82 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF30-201 - 624 1.1e-07 31.5 75.2 2 17 7.4 7.3e+03 -3.2 0.1 9 26 181 198 181 198 0.75 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF30-201 - 624 1.1e-07 31.5 75.2 3 17 0.47 4.6e+02 0.7 0.2 6 12 206 212 203 226 0.79 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF30-201 - 624 1.1e-07 31.5 75.2 4 17 0.068 68 3.4 0.1 7 23 235 251 232 253 0.91 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF30-201 - 624 1.1e-07 31.5 75.2 5 17 0.098 97 2.9 0.3 7 26 263 282 261 283 0.86 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF30-201 - 624 1.1e-07 31.5 75.2 6 17 0.00088 0.88 9.4 0.1 6 26 290 310 287 311 0.93 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF30-201 - 624 1.1e-07 31.5 75.2 7 17 0.00015 0.15 11.8 0.1 6 26 318 338 315 339 0.91 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF30-201 - 624 1.1e-07 31.5 75.2 8 17 0.44 4.4e+02 0.8 0.5 7 25 347 365 344 367 0.73 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF30-201 - 624 1.1e-07 31.5 75.2 9 17 0.028 28 4.6 0.4 7 23 375 391 373 394 0.80 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF30-201 - 624 1.1e-07 31.5 75.2 10 17 0.028 28 4.6 0.1 6 26 402 422 399 423 0.87 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF30-201 - 624 1.1e-07 31.5 75.2 11 17 0.086 85 3.0 0.2 6 23 430 447 427 451 0.80 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF30-201 - 624 1.1e-07 31.5 75.2 12 17 0.0066 6.5 6.6 0.3 6 26 458 478 455 479 0.93 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF30-201 - 624 1.1e-07 31.5 75.2 13 17 0.024 23 4.8 0.2 6 26 486 506 483 507 0.89 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF30-201 - 624 1.1e-07 31.5 75.2 14 17 0.0015 1.5 8.7 0.1 6 26 514 534 512 535 0.91 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF30-201 - 624 1.1e-07 31.5 75.2 15 17 0.075 75 3.2 0.1 6 20 542 556 539 561 0.82 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF30-201 - 624 1.1e-07 31.5 75.2 16 17 0.71 7e+02 0.1 0.1 7 14 571 578 568 590 0.80 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF30-201 - 624 1.1e-07 31.5 75.2 17 17 0.0068 6.8 6.5 0.3 5 24 597 620 594 623 0.63 zinc-finger C2H2-type zf-trcl PF13451.6 48 ZNF30-201 - 624 4e-07 29.8 67.8 1 16 0.027 27 4.8 0.2 32 41 147 156 140 162 0.72 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF30-201 - 624 4e-07 29.8 67.8 2 16 0.031 30 4.6 0.2 3 12 203 212 201 214 0.85 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF30-201 - 624 4e-07 29.8 67.8 3 16 0.35 3.5e+02 1.2 0.1 3 14 231 242 230 245 0.86 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF30-201 - 624 4e-07 29.8 67.8 4 16 0.077 77 3.3 0.1 3 14 259 270 257 281 0.83 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF30-201 - 624 4e-07 29.8 67.8 5 16 0.037 37 4.3 0.1 3 14 287 298 285 301 0.87 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF30-201 - 624 4e-07 29.8 67.8 6 16 0.01 10 6.1 0.1 3 15 315 327 313 331 0.88 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF30-201 - 624 4e-07 29.8 67.8 7 16 0.031 31 4.6 0.4 3 14 343 354 341 370 0.87 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF30-201 - 624 4e-07 29.8 67.8 8 16 0.093 93 3.0 0.2 3 14 371 382 369 383 0.87 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF30-201 - 624 4e-07 29.8 67.8 9 16 0.045 45 4.0 0.1 3 14 399 410 397 411 0.87 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF30-201 - 624 4e-07 29.8 67.8 10 16 0.012 12 5.8 0.1 3 15 427 439 425 444 0.90 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF30-201 - 624 4e-07 29.8 67.8 11 16 0.045 45 4.0 0.1 3 14 455 466 453 469 0.88 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF30-201 - 624 4e-07 29.8 67.8 12 16 0.048 48 4.0 0.2 3 14 483 494 481 495 0.89 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF30-201 - 624 4e-07 29.8 67.8 13 16 0.07 70 3.4 0.3 3 14 511 522 510 523 0.87 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF30-201 - 624 4e-07 29.8 67.8 14 16 0.064 64 3.6 0.1 3 15 539 551 537 555 0.88 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF30-201 - 624 4e-07 29.8 67.8 15 16 0.032 32 4.5 0.1 3 14 567 578 565 583 0.89 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF30-201 - 624 4e-07 29.8 67.8 16 16 0.0028 2.8 7.9 0.2 3 17 595 609 593 611 0.87 Probable zinc-ribbon domain # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF30-201.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF30-201.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF30-201.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF30-201.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF30-201.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:03:32 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZNF30-202 - 624 1.1e-131 424.0 124.2 1 18 2.9e-06 0.0029 18.0 0.8 4 26 138 160 136 160 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF30-202 - 624 1.1e-131 424.0 124.2 2 18 3.4e-07 0.00034 20.9 0.1 2 25 164 187 163 188 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF30-202 - 624 1.1e-131 424.0 124.2 3 18 4.4e-08 4.4e-05 23.7 0.4 2 23 192 213 191 215 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF30-202 - 624 1.1e-131 424.0 124.2 4 18 2.3e-09 2.3e-06 27.7 0.3 2 24 220 242 219 243 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF30-202 - 624 1.1e-131 424.0 124.2 5 18 4e-10 4e-07 30.2 0.7 2 26 248 272 247 272 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF30-202 - 624 1.1e-131 424.0 124.2 6 18 7e-12 6.9e-09 35.7 0.7 2 26 276 300 275 300 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF30-202 - 624 1.1e-131 424.0 124.2 7 18 1e-11 1e-08 35.2 1.1 2 25 304 327 304 327 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF30-202 - 624 1.1e-131 424.0 124.2 8 18 1.9e-11 1.9e-08 34.4 0.6 2 24 332 354 331 355 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF30-202 - 624 1.1e-131 424.0 124.2 9 18 0.00029 0.29 11.6 0.8 4 25 362 383 360 384 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF30-202 - 624 1.1e-131 424.0 124.2 10 18 8.6e-11 8.6e-08 32.3 0.5 2 26 388 412 387 412 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF30-202 - 624 1.1e-131 424.0 124.2 11 18 3e-12 3e-09 36.9 0.2 2 25 416 439 415 440 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF30-202 - 624 1.1e-131 424.0 124.2 12 18 1.4e-11 1.4e-08 34.8 0.6 2 24 444 466 443 467 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF30-202 - 624 1.1e-131 424.0 124.2 13 18 2e-09 2e-06 28.0 2.8 1 25 471 495 471 496 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF30-202 - 624 1.1e-131 424.0 124.2 14 18 5.1e-12 5.1e-09 36.2 0.8 2 26 500 524 499 524 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF30-202 - 624 1.1e-131 424.0 124.2 15 18 5.1e-12 5.1e-09 36.2 0.5 2 25 528 551 527 551 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF30-202 - 624 1.1e-131 424.0 124.2 16 18 7e-10 6.9e-07 29.4 0.4 5 24 559 578 556 579 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF30-202 - 624 1.1e-131 424.0 124.2 17 18 7.3e-11 7.2e-08 32.5 3.6 2 25 584 607 584 608 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF30-202 - 624 1.1e-131 424.0 124.2 18 18 0.26 2.6e+02 2.3 0.2 1 10 611 620 611 623 0.82 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZNF30-202 - 624 3.3e-88 285.5 106.9 1 17 2.2e-06 0.0022 18.4 2.1 2 23 150 171 150 171 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF30-202 - 624 3.3e-88 285.5 106.9 2 17 0.0017 1.7 9.3 0.0 5 23 181 199 179 199 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF30-202 - 624 3.3e-88 285.5 106.9 3 17 2.2e-05 0.022 15.2 0.4 2 23 206 227 205 227 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF30-202 - 624 3.3e-88 285.5 106.9 4 17 2.3e-05 0.023 15.1 0.2 1 23 233 255 233 255 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF30-202 - 624 3.3e-88 285.5 106.9 5 17 1.9e-07 0.00018 21.7 0.2 3 23 263 283 261 283 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF30-202 - 624 3.3e-88 285.5 106.9 6 17 6e-09 6e-06 26.4 0.2 1 23 289 311 289 311 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF30-202 - 624 3.3e-88 285.5 106.9 7 17 3.4e-08 3.4e-05 24.1 0.5 1 23 317 339 317 339 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF30-202 - 624 3.3e-88 285.5 106.9 8 17 9.1e-07 0.0009 19.6 1.4 1 23 345 367 345 367 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF30-202 - 624 3.3e-88 285.5 106.9 9 17 2.6e-07 0.00026 21.3 0.3 3 23 375 395 373 395 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF30-202 - 624 3.3e-88 285.5 106.9 10 17 3e-08 3e-05 24.2 0.2 1 23 401 423 401 423 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF30-202 - 624 3.3e-88 285.5 106.9 11 17 1.1e-08 1.1e-05 25.6 1.0 1 23 429 451 429 451 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF30-202 - 624 3.3e-88 285.5 106.9 12 17 1.7e-06 0.0017 18.7 3.0 1 23 457 479 457 479 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF30-202 - 624 3.3e-88 285.5 106.9 13 17 1.3e-08 1.3e-05 25.4 0.6 1 23 485 507 485 507 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF30-202 - 624 3.3e-88 285.5 106.9 14 17 5e-08 5e-05 23.5 0.2 1 23 513 535 513 535 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF30-202 - 624 3.3e-88 285.5 106.9 15 17 3.8e-06 0.0037 17.6 0.1 1 23 541 563 541 563 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF30-202 - 624 3.3e-88 285.5 106.9 16 17 3.4e-07 0.00034 20.9 0.5 1 23 569 591 569 591 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF30-202 - 624 3.3e-88 285.5 106.9 17 17 4.5e-09 4.5e-06 26.8 3.0 1 23 597 619 597 619 0.99 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZNF30-202 - 624 2.7e-48 158.4 108.3 1 17 0.00015 0.15 13.0 0.9 2 23 150 171 149 172 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF30-202 - 624 2.7e-48 158.4 108.3 2 17 0.94 9.3e+02 1.2 0.0 5 19 181 195 180 199 0.89 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF30-202 - 624 2.7e-48 158.4 108.3 3 17 0.00081 0.8 10.7 0.4 2 23 206 227 205 228 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF30-202 - 624 2.7e-48 158.4 108.3 4 17 0.00011 0.11 13.4 0.2 1 23 233 255 233 256 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF30-202 - 624 2.7e-48 158.4 108.3 5 17 5.4e-05 0.054 14.3 0.4 1 23 261 283 261 284 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF30-202 - 624 2.7e-48 158.4 108.3 6 17 2.3e-06 0.0022 18.7 0.4 1 23 289 311 289 312 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF30-202 - 624 2.7e-48 158.4 108.3 7 17 1.2e-05 0.012 16.4 0.5 1 23 317 339 317 340 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF30-202 - 624 2.7e-48 158.4 108.3 8 17 0.00025 0.25 12.3 1.1 1 23 345 367 345 368 0.83 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF30-202 - 624 2.7e-48 158.4 108.3 9 17 0.0011 1.1 10.3 0.4 2 19 374 391 373 395 0.88 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF30-202 - 624 2.7e-48 158.4 108.3 10 17 1.8e-05 0.018 15.8 0.3 1 23 401 423 401 424 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF30-202 - 624 2.7e-48 158.4 108.3 11 17 2.4e-05 0.023 15.5 1.1 1 23 429 451 429 452 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF30-202 - 624 2.7e-48 158.4 108.3 12 17 0.00034 0.33 11.9 2.6 1 23 457 479 457 480 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF30-202 - 624 2.7e-48 158.4 108.3 13 17 1.2e-05 0.012 16.4 0.7 1 23 485 507 485 508 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF30-202 - 624 2.7e-48 158.4 108.3 14 17 1.5e-05 0.015 16.1 0.3 1 23 513 535 513 536 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF30-202 - 624 2.7e-48 158.4 108.3 15 17 0.00038 0.38 11.7 0.1 1 23 541 563 541 564 0.91 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF30-202 - 624 2.7e-48 158.4 108.3 16 17 0.00045 0.45 11.5 0.7 1 23 569 591 569 592 0.80 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF30-202 - 624 2.7e-48 158.4 108.3 17 17 7.8e-07 0.00078 20.1 2.5 1 23 597 619 597 620 0.96 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF30-202 - 624 6.8e-28 96.1 118.5 1 18 0.2 2e+02 2.1 0.1 14 24 50 60 45 62 0.81 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF30-202 - 624 6.8e-28 96.1 118.5 2 18 0.007 7 6.8 0.7 3 18 150 165 150 171 0.76 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF30-202 - 624 6.8e-28 96.1 118.5 3 18 2.6 2.6e+03 -1.4 0.1 7 16 182 191 181 199 0.79 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF30-202 - 624 6.8e-28 96.1 118.5 4 18 0.092 91 3.2 0.3 3 10 206 213 206 227 0.88 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF30-202 - 624 6.8e-28 96.1 118.5 5 18 0.012 12 6.0 0.7 2 24 233 255 233 258 0.82 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF30-202 - 624 6.8e-28 96.1 118.5 6 18 0.0038 3.7 7.6 0.8 2 20 261 279 261 286 0.78 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF30-202 - 624 6.8e-28 96.1 118.5 7 18 0.00011 0.11 12.5 0.5 2 13 289 300 289 311 0.85 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF30-202 - 624 6.8e-28 96.1 118.5 8 18 6.1e-05 0.061 13.3 0.9 2 20 317 335 317 340 0.80 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF30-202 - 624 6.8e-28 96.1 118.5 9 18 0.0013 1.3 9.1 1.1 2 12 345 355 345 355 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF30-202 - 624 6.8e-28 96.1 118.5 10 18 0.0027 2.7 8.1 0.2 2 12 373 383 373 385 0.90 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF30-202 - 624 6.8e-28 96.1 118.5 11 18 3.6e-05 0.036 14.1 0.8 2 15 401 414 401 424 0.82 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF30-202 - 624 6.8e-28 96.1 118.5 12 18 0.00079 0.79 9.8 0.5 2 11 429 438 429 451 0.86 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF30-202 - 624 6.8e-28 96.1 118.5 13 18 9.7e-05 0.096 12.7 1.7 2 24 457 479 457 482 0.91 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF30-202 - 624 6.8e-28 96.1 118.5 14 18 7.6e-05 0.075 13.0 0.6 2 13 485 496 485 507 0.89 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF30-202 - 624 6.8e-28 96.1 118.5 15 18 2.3e-05 0.022 14.7 0.9 2 15 513 526 513 536 0.82 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF30-202 - 624 6.8e-28 96.1 118.5 16 18 0.00017 0.17 11.9 0.6 2 22 541 561 541 565 0.91 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF30-202 - 624 6.8e-28 96.1 118.5 17 18 0.00083 0.83 9.7 0.5 2 12 569 579 569 582 0.95 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF30-202 - 624 6.8e-28 96.1 118.5 18 18 2.8e-06 0.0028 17.6 2.9 2 26 597 621 597 622 0.96 C2H2-type zinc finger zf-C2H2_jaz PF12171.8 27 ZNF30-202 - 624 5e-25 87.2 57.7 1 17 8.9 8.8e+03 -2.8 0.2 19 26 55 62 52 62 0.81 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF30-202 - 624 5e-25 87.2 57.7 2 17 0.001 1 9.8 0.2 3 22 150 169 148 169 0.91 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF30-202 - 624 5e-25 87.2 57.7 3 17 0.29 2.9e+02 1.9 0.0 7 20 182 195 182 195 0.97 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF30-202 - 624 5e-25 87.2 57.7 4 17 0.0055 5.5 7.4 0.0 2 21 205 224 204 225 0.91 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF30-202 - 624 5e-25 87.2 57.7 5 17 2 2e+03 -0.7 0.1 2 11 233 242 232 243 0.88 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF30-202 - 624 5e-25 87.2 57.7 6 17 0.027 27 5.2 0.0 4 22 263 281 260 281 0.89 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF30-202 - 624 5e-25 87.2 57.7 7 17 0.0021 2.1 8.8 0.0 2 21 289 308 288 309 0.87 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF30-202 - 624 5e-25 87.2 57.7 8 17 0.057 57 4.2 0.1 2 11 317 326 316 335 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF30-202 - 624 5e-25 87.2 57.7 9 17 0.012 12 6.3 0.2 2 21 345 364 344 365 0.86 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF30-202 - 624 5e-25 87.2 57.7 10 17 0.0026 2.6 8.4 0.0 4 20 375 391 372 391 0.96 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF30-202 - 624 5e-25 87.2 57.7 11 17 0.00047 0.47 10.8 0.0 2 22 401 421 400 421 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF30-202 - 624 5e-25 87.2 57.7 12 17 3.3e-05 0.033 14.5 0.1 2 22 429 449 428 449 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF30-202 - 624 5e-25 87.2 57.7 13 17 0.05 50 4.4 0.4 2 21 457 476 456 477 0.80 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF30-202 - 624 5e-25 87.2 57.7 14 17 0.0001 0.1 12.9 0.1 2 20 485 503 484 504 0.95 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF30-202 - 624 5e-25 87.2 57.7 15 17 0.00033 0.32 11.3 0.0 2 22 513 533 512 533 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF30-202 - 624 5e-25 87.2 57.7 16 17 0.021 21 5.5 0.1 2 21 569 588 568 589 0.80 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF30-202 - 624 5e-25 87.2 57.7 17 17 0.0064 6.4 7.2 0.6 2 22 597 617 596 619 0.93 Zinc-finger double-stranded RNA-binding KRAB PF01352.27 42 ZNF30-202 - 624 1.1e-24 85.8 0.2 1 1 1.8e-27 1.8e-24 85.1 0.2 1 42 13 54 13 54 0.99 KRAB box XPA_N PF01286.18 32 ZNF30-202 - 624 2.2e-21 75.6 68.6 1 17 0.0069 6.8 6.8 0.3 2 12 149 159 148 161 0.86 XPA protein N-terminal XPA_N PF01286.18 32 ZNF30-202 - 624 2.2e-21 75.6 68.6 2 17 3.1 3.1e+03 -1.7 0.1 5 11 180 186 180 188 0.84 XPA protein N-terminal XPA_N PF01286.18 32 ZNF30-202 - 624 2.2e-21 75.6 68.6 3 17 0.0049 4.9 7.3 0.0 2 15 205 218 204 223 0.87 XPA protein N-terminal XPA_N PF01286.18 32 ZNF30-202 - 624 2.2e-21 75.6 68.6 4 17 0.031 31 4.7 0.1 3 12 234 243 232 244 0.89 XPA protein N-terminal XPA_N PF01286.18 32 ZNF30-202 - 624 2.2e-21 75.6 68.6 5 17 0.002 2 8.5 0.2 4 18 263 278 262 280 0.85 XPA protein N-terminal XPA_N PF01286.18 32 ZNF30-202 - 624 2.2e-21 75.6 68.6 6 17 0.0018 1.8 8.7 0.5 3 14 290 301 288 302 0.91 XPA protein N-terminal XPA_N PF01286.18 32 ZNF30-202 - 624 2.2e-21 75.6 68.6 7 17 0.013 13 5.9 0.2 3 12 318 327 316 328 0.88 XPA protein N-terminal XPA_N PF01286.18 32 ZNF30-202 - 624 2.2e-21 75.6 68.6 8 17 0.0027 2.7 8.1 0.2 3 14 346 357 344 363 0.79 XPA protein N-terminal XPA_N PF01286.18 32 ZNF30-202 - 624 2.2e-21 75.6 68.6 9 17 0.0095 9.5 6.4 0.0 4 18 375 390 373 391 0.79 XPA protein N-terminal XPA_N PF01286.18 32 ZNF30-202 - 624 2.2e-21 75.6 68.6 10 17 0.00074 0.74 9.9 0.1 3 18 402 418 400 420 0.82 XPA protein N-terminal XPA_N PF01286.18 32 ZNF30-202 - 624 2.2e-21 75.6 68.6 11 17 0.013 13 6.0 0.2 3 11 430 438 428 440 0.88 XPA protein N-terminal XPA_N PF01286.18 32 ZNF30-202 - 624 2.2e-21 75.6 68.6 12 17 0.013 13 5.9 0.2 3 11 458 466 456 468 0.89 XPA protein N-terminal XPA_N PF01286.18 32 ZNF30-202 - 624 2.2e-21 75.6 68.6 13 17 0.00098 0.98 9.5 0.1 3 18 486 502 484 503 0.79 XPA protein N-terminal XPA_N PF01286.18 32 ZNF30-202 - 624 2.2e-21 75.6 68.6 14 17 0.001 1 9.5 0.1 3 18 514 530 512 532 0.81 XPA protein N-terminal XPA_N PF01286.18 32 ZNF30-202 - 624 2.2e-21 75.6 68.6 15 17 0.049 49 4.1 0.1 3 12 542 551 540 552 0.88 XPA protein N-terminal XPA_N PF01286.18 32 ZNF30-202 - 624 2.2e-21 75.6 68.6 16 17 0.0016 1.6 8.9 0.1 3 19 570 587 568 590 0.86 XPA protein N-terminal XPA_N PF01286.18 32 ZNF30-202 - 624 2.2e-21 75.6 68.6 17 17 0.014 14 5.8 0.1 3 14 598 609 596 612 0.88 XPA protein N-terminal Zn-ribbon_8 PF09723.10 40 ZNF30-202 - 624 2.1e-17 63.0 93.8 1 17 2.5 2.5e+03 -1.3 0.2 10 31 105 125 104 132 0.74 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF30-202 - 624 2.1e-17 63.0 93.8 2 17 0.024 24 5.1 1.0 16 35 140 157 125 160 0.63 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF30-202 - 624 2.1e-17 63.0 93.8 3 17 0.048 48 4.2 0.4 7 16 150 159 150 171 0.83 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF30-202 - 624 2.1e-17 63.0 93.8 4 17 0.026 26 5.0 0.4 10 35 181 213 177 217 0.63 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF30-202 - 624 2.1e-17 63.0 93.8 5 17 0.0015 1.5 9.0 4.0 6 34 233 268 232 271 0.89 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF30-202 - 624 2.1e-17 63.0 93.8 6 17 0.00029 0.29 11.3 5.2 6 34 261 296 260 300 0.89 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF30-202 - 624 2.1e-17 63.0 93.8 7 17 2e-05 0.02 15.0 5.6 6 34 289 324 288 329 0.92 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF30-202 - 624 2.1e-17 63.0 93.8 8 17 1.2e-05 0.012 15.7 4.7 6 36 317 354 316 357 0.91 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF30-202 - 624 2.1e-17 63.0 93.8 9 17 2.6e-05 0.025 14.7 2.7 6 38 345 384 344 386 0.89 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF30-202 - 624 2.1e-17 63.0 93.8 10 17 8.8e-06 0.0088 16.1 3.8 6 34 401 436 400 442 0.92 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF30-202 - 624 2.1e-17 63.0 93.8 11 17 6.8e-05 0.068 13.3 5.3 6 36 429 466 428 470 0.90 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF30-202 - 624 2.1e-17 63.0 93.8 12 17 3.6e-05 0.036 14.2 5.3 6 38 457 496 456 497 0.84 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF30-202 - 624 2.1e-17 63.0 93.8 13 17 7.2e-05 0.072 13.2 5.7 6 34 485 520 482 523 0.84 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF30-202 - 624 2.1e-17 63.0 93.8 14 17 3.4e-05 0.034 14.3 4.4 6 35 513 549 512 551 0.92 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF30-202 - 624 2.1e-17 63.0 93.8 15 17 0.00017 0.17 12.1 4.4 6 35 541 577 540 579 0.88 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF30-202 - 624 2.1e-17 63.0 93.8 16 17 0.00024 0.24 11.5 4.2 6 36 569 606 568 609 0.90 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF30-202 - 624 2.1e-17 63.0 93.8 17 17 0.012 12 6.2 0.3 6 16 597 607 596 613 0.88 Zinc ribbon domain zf_UBZ PF18439.1 32 ZNF30-202 - 624 3.2e-14 52.2 63.4 1 17 0.038 38 4.0 0.2 5 14 151 160 149 168 0.77 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF30-202 - 624 3.2e-14 52.2 63.4 2 17 8.6 8.6e+03 -3.5 0.0 6 12 180 186 180 188 0.80 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF30-202 - 624 3.2e-14 52.2 63.4 3 17 0.0063 6.2 6.5 0.1 4 20 206 223 204 224 0.80 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF30-202 - 624 3.2e-14 52.2 63.4 4 17 0.012 12 5.6 0.0 3 20 233 251 231 252 0.81 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF30-202 - 624 3.2e-14 52.2 63.4 5 17 0.014 14 5.3 0.1 4 15 262 273 259 280 0.79 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF30-202 - 624 3.2e-14 52.2 63.4 6 17 0.0047 4.7 6.9 0.2 3 15 289 301 287 308 0.80 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF30-202 - 624 3.2e-14 52.2 63.4 7 17 0.0026 2.6 7.7 0.1 3 21 317 336 315 336 0.84 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF30-202 - 624 3.2e-14 52.2 63.4 8 17 0.034 34 4.1 0.1 3 14 345 356 343 361 0.81 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF30-202 - 624 3.2e-14 52.2 63.4 9 17 0.06 60 3.4 0.1 3 15 373 385 371 391 0.83 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF30-202 - 624 3.2e-14 52.2 63.4 10 17 0.0095 9.5 5.9 0.1 3 14 401 412 399 420 0.82 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF30-202 - 624 3.2e-14 52.2 63.4 11 17 0.011 11 5.7 0.3 3 20 429 447 427 448 0.76 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF30-202 - 624 3.2e-14 52.2 63.4 12 17 0.0065 6.4 6.5 0.5 3 20 457 475 455 476 0.86 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF30-202 - 624 3.2e-14 52.2 63.4 13 17 0.004 4 7.1 0.1 3 15 485 497 483 504 0.82 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF30-202 - 624 3.2e-14 52.2 63.4 14 17 0.0079 7.9 6.2 0.1 3 14 513 524 511 532 0.82 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF30-202 - 624 3.2e-14 52.2 63.4 15 17 0.043 43 3.8 0.1 3 14 541 552 539 560 0.78 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF30-202 - 624 3.2e-14 52.2 63.4 16 17 0.0077 7.7 6.2 0.1 3 21 569 588 567 588 0.85 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF30-202 - 624 3.2e-14 52.2 63.4 17 17 0.025 25 4.6 0.2 3 12 597 606 595 613 0.88 Ubiquitin-Binding Zinc Finger zinc_ribbon_15 PF17032.5 86 ZNF30-202 - 624 4.2e-08 33.8 61.5 1 9 0.33 3.2e+02 2.1 3.1 45 77 129 160 95 167 0.58 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF30-202 - 624 4.2e-08 33.8 61.5 2 9 0.012 11 6.8 0.1 38 80 177 219 168 223 0.80 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF30-202 - 624 4.2e-08 33.8 61.5 3 9 0.057 57 4.6 0.4 33 75 228 270 222 275 0.84 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF30-202 - 624 4.2e-08 33.8 61.5 4 9 0.00029 0.29 11.9 1.7 26 74 277 325 269 330 0.86 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF30-202 - 624 4.2e-08 33.8 61.5 5 9 0.0036 3.6 8.4 0.3 33 76 340 383 334 388 0.85 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF30-202 - 624 4.2e-08 33.8 61.5 6 9 0.0024 2.4 9.0 1.0 32 75 395 438 386 447 0.84 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF30-202 - 624 4.2e-08 33.8 61.5 7 9 0.00078 0.78 10.5 1.7 32 76 451 495 444 499 0.87 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF30-202 - 624 4.2e-08 33.8 61.5 8 9 0.0012 1.2 9.9 1.2 26 74 501 549 497 553 0.86 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF30-202 - 624 4.2e-08 33.8 61.5 9 9 0.0026 2.6 8.9 0.4 33 76 564 607 556 611 0.83 zinc-ribbon family zf-C2H2_11 PF16622.5 29 ZNF30-202 - 624 1.1e-07 31.5 75.2 1 17 0.015 15 5.5 0.1 6 16 150 160 147 170 0.82 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF30-202 - 624 1.1e-07 31.5 75.2 2 17 7.4 7.3e+03 -3.2 0.1 9 26 181 198 181 198 0.75 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF30-202 - 624 1.1e-07 31.5 75.2 3 17 0.47 4.6e+02 0.7 0.2 6 12 206 212 203 226 0.79 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF30-202 - 624 1.1e-07 31.5 75.2 4 17 0.068 68 3.4 0.1 7 23 235 251 232 253 0.91 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF30-202 - 624 1.1e-07 31.5 75.2 5 17 0.098 97 2.9 0.3 7 26 263 282 261 283 0.86 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF30-202 - 624 1.1e-07 31.5 75.2 6 17 0.00088 0.88 9.4 0.1 6 26 290 310 287 311 0.93 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF30-202 - 624 1.1e-07 31.5 75.2 7 17 0.00015 0.15 11.8 0.1 6 26 318 338 315 339 0.91 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF30-202 - 624 1.1e-07 31.5 75.2 8 17 0.44 4.4e+02 0.8 0.5 7 25 347 365 344 367 0.73 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF30-202 - 624 1.1e-07 31.5 75.2 9 17 0.028 28 4.6 0.4 7 23 375 391 373 394 0.80 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF30-202 - 624 1.1e-07 31.5 75.2 10 17 0.028 28 4.6 0.1 6 26 402 422 399 423 0.87 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF30-202 - 624 1.1e-07 31.5 75.2 11 17 0.086 85 3.0 0.2 6 23 430 447 427 451 0.80 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF30-202 - 624 1.1e-07 31.5 75.2 12 17 0.0066 6.5 6.6 0.3 6 26 458 478 455 479 0.93 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF30-202 - 624 1.1e-07 31.5 75.2 13 17 0.024 23 4.8 0.2 6 26 486 506 483 507 0.89 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF30-202 - 624 1.1e-07 31.5 75.2 14 17 0.0015 1.5 8.7 0.1 6 26 514 534 512 535 0.91 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF30-202 - 624 1.1e-07 31.5 75.2 15 17 0.075 75 3.2 0.1 6 20 542 556 539 561 0.82 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF30-202 - 624 1.1e-07 31.5 75.2 16 17 0.71 7e+02 0.1 0.1 7 14 571 578 568 590 0.80 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF30-202 - 624 1.1e-07 31.5 75.2 17 17 0.0068 6.8 6.5 0.3 5 24 597 620 594 623 0.63 zinc-finger C2H2-type zf-trcl PF13451.6 48 ZNF30-202 - 624 4e-07 29.8 67.8 1 16 0.027 27 4.8 0.2 32 41 147 156 140 162 0.72 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF30-202 - 624 4e-07 29.8 67.8 2 16 0.031 30 4.6 0.2 3 12 203 212 201 214 0.85 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF30-202 - 624 4e-07 29.8 67.8 3 16 0.35 3.5e+02 1.2 0.1 3 14 231 242 230 245 0.86 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF30-202 - 624 4e-07 29.8 67.8 4 16 0.077 77 3.3 0.1 3 14 259 270 257 281 0.83 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF30-202 - 624 4e-07 29.8 67.8 5 16 0.037 37 4.3 0.1 3 14 287 298 285 301 0.87 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF30-202 - 624 4e-07 29.8 67.8 6 16 0.01 10 6.1 0.1 3 15 315 327 313 331 0.88 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF30-202 - 624 4e-07 29.8 67.8 7 16 0.031 31 4.6 0.4 3 14 343 354 341 370 0.87 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF30-202 - 624 4e-07 29.8 67.8 8 16 0.093 93 3.0 0.2 3 14 371 382 369 383 0.87 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF30-202 - 624 4e-07 29.8 67.8 9 16 0.045 45 4.0 0.1 3 14 399 410 397 411 0.87 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF30-202 - 624 4e-07 29.8 67.8 10 16 0.012 12 5.8 0.1 3 15 427 439 425 444 0.90 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF30-202 - 624 4e-07 29.8 67.8 11 16 0.045 45 4.0 0.1 3 14 455 466 453 469 0.88 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF30-202 - 624 4e-07 29.8 67.8 12 16 0.048 48 4.0 0.2 3 14 483 494 481 495 0.89 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF30-202 - 624 4e-07 29.8 67.8 13 16 0.07 70 3.4 0.3 3 14 511 522 510 523 0.87 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF30-202 - 624 4e-07 29.8 67.8 14 16 0.064 64 3.6 0.1 3 15 539 551 537 555 0.88 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF30-202 - 624 4e-07 29.8 67.8 15 16 0.032 32 4.5 0.1 3 14 567 578 565 583 0.89 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF30-202 - 624 4e-07 29.8 67.8 16 16 0.0028 2.8 7.9 0.2 3 17 595 609 593 611 0.87 Probable zinc-ribbon domain # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF30-202.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF30-202.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF30-202.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF30-202.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF30-202.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:03:33 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF30-203.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF30-203.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF30-203.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF30-203.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF30-203.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:03:34 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZNF30-204 - 623 1.1e-131 424.0 124.2 1 18 2.9e-06 0.0029 18.0 0.8 4 26 137 159 135 159 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF30-204 - 623 1.1e-131 424.0 124.2 2 18 3.4e-07 0.00034 20.9 0.1 2 25 163 186 162 187 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF30-204 - 623 1.1e-131 424.0 124.2 3 18 4.4e-08 4.4e-05 23.7 0.4 2 23 191 212 190 214 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF30-204 - 623 1.1e-131 424.0 124.2 4 18 2.3e-09 2.3e-06 27.8 0.3 2 24 219 241 218 242 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF30-204 - 623 1.1e-131 424.0 124.2 5 18 4e-10 4e-07 30.2 0.7 2 26 247 271 246 271 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF30-204 - 623 1.1e-131 424.0 124.2 6 18 7e-12 6.9e-09 35.7 0.7 2 26 275 299 274 299 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF30-204 - 623 1.1e-131 424.0 124.2 7 18 1e-11 1e-08 35.2 1.1 2 25 303 326 303 326 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF30-204 - 623 1.1e-131 424.0 124.2 8 18 1.9e-11 1.9e-08 34.4 0.6 2 24 331 353 330 354 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF30-204 - 623 1.1e-131 424.0 124.2 9 18 0.00029 0.29 11.6 0.8 4 25 361 382 359 383 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF30-204 - 623 1.1e-131 424.0 124.2 10 18 8.6e-11 8.5e-08 32.3 0.5 2 26 387 411 386 411 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF30-204 - 623 1.1e-131 424.0 124.2 11 18 3e-12 3e-09 36.9 0.2 2 25 415 438 414 439 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF30-204 - 623 1.1e-131 424.0 124.2 12 18 1.4e-11 1.4e-08 34.8 0.6 2 24 443 465 442 466 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF30-204 - 623 1.1e-131 424.0 124.2 13 18 2e-09 2e-06 28.0 2.8 1 25 470 494 470 495 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF30-204 - 623 1.1e-131 424.0 124.2 14 18 5.1e-12 5e-09 36.2 0.8 2 26 499 523 498 523 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF30-204 - 623 1.1e-131 424.0 124.2 15 18 5.1e-12 5e-09 36.2 0.5 2 25 527 550 526 550 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF30-204 - 623 1.1e-131 424.0 124.2 16 18 7e-10 6.9e-07 29.4 0.4 5 24 558 577 555 578 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF30-204 - 623 1.1e-131 424.0 124.2 17 18 7.2e-11 7.2e-08 32.5 3.6 2 25 583 606 583 607 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF30-204 - 623 1.1e-131 424.0 124.2 18 18 0.26 2.6e+02 2.3 0.2 1 10 610 619 610 622 0.82 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZNF30-204 - 623 3.2e-88 285.6 106.9 1 17 2.2e-06 0.0022 18.4 2.1 2 23 149 170 149 170 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF30-204 - 623 3.2e-88 285.6 106.9 2 17 0.0017 1.7 9.3 0.0 5 23 180 198 178 198 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF30-204 - 623 3.2e-88 285.6 106.9 3 17 2.2e-05 0.022 15.2 0.4 2 23 205 226 204 226 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF30-204 - 623 3.2e-88 285.6 106.9 4 17 2.3e-05 0.023 15.1 0.2 1 23 232 254 232 254 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF30-204 - 623 3.2e-88 285.6 106.9 5 17 1.9e-07 0.00018 21.7 0.2 3 23 262 282 260 282 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF30-204 - 623 3.2e-88 285.6 106.9 6 17 6e-09 6e-06 26.4 0.2 1 23 288 310 288 310 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF30-204 - 623 3.2e-88 285.6 106.9 7 17 3.4e-08 3.4e-05 24.1 0.5 1 23 316 338 316 338 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF30-204 - 623 3.2e-88 285.6 106.9 8 17 9.1e-07 0.0009 19.6 1.4 1 23 344 366 344 366 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF30-204 - 623 3.2e-88 285.6 106.9 9 17 2.6e-07 0.00026 21.3 0.3 3 23 374 394 372 394 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF30-204 - 623 3.2e-88 285.6 106.9 10 17 3e-08 3e-05 24.2 0.2 1 23 400 422 400 422 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF30-204 - 623 3.2e-88 285.6 106.9 11 17 1.1e-08 1.1e-05 25.6 1.0 1 23 428 450 428 450 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF30-204 - 623 3.2e-88 285.6 106.9 12 17 1.7e-06 0.0017 18.7 3.0 1 23 456 478 456 478 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF30-204 - 623 3.2e-88 285.6 106.9 13 17 1.3e-08 1.2e-05 25.4 0.6 1 23 484 506 484 506 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF30-204 - 623 3.2e-88 285.6 106.9 14 17 5e-08 5e-05 23.5 0.2 1 23 512 534 512 534 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF30-204 - 623 3.2e-88 285.6 106.9 15 17 3.8e-06 0.0037 17.6 0.1 1 23 540 562 540 562 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF30-204 - 623 3.2e-88 285.6 106.9 16 17 3.4e-07 0.00034 20.9 0.5 1 23 568 590 568 590 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF30-204 - 623 3.2e-88 285.6 106.9 17 17 4.5e-09 4.5e-06 26.8 3.0 1 23 596 618 596 618 0.99 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZNF30-204 - 623 2.7e-48 158.4 108.3 1 17 0.00015 0.15 13.0 0.9 2 23 149 170 148 171 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF30-204 - 623 2.7e-48 158.4 108.3 2 17 0.94 9.3e+02 1.2 0.0 5 19 180 194 179 198 0.89 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF30-204 - 623 2.7e-48 158.4 108.3 3 17 0.00081 0.8 10.7 0.4 2 23 205 226 204 227 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF30-204 - 623 2.7e-48 158.4 108.3 4 17 0.00011 0.11 13.4 0.2 1 23 232 254 232 255 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF30-204 - 623 2.7e-48 158.4 108.3 5 17 5.4e-05 0.054 14.4 0.4 1 23 260 282 260 283 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF30-204 - 623 2.7e-48 158.4 108.3 6 17 2.3e-06 0.0022 18.7 0.4 1 23 288 310 288 311 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF30-204 - 623 2.7e-48 158.4 108.3 7 17 1.2e-05 0.012 16.4 0.5 1 23 316 338 316 339 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF30-204 - 623 2.7e-48 158.4 108.3 8 17 0.00025 0.25 12.3 1.1 1 23 344 366 344 367 0.83 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF30-204 - 623 2.7e-48 158.4 108.3 9 17 0.0011 1.1 10.3 0.4 2 19 373 390 372 394 0.88 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF30-204 - 623 2.7e-48 158.4 108.3 10 17 1.8e-05 0.018 15.8 0.3 1 23 400 422 400 423 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF30-204 - 623 2.7e-48 158.4 108.3 11 17 2.3e-05 0.023 15.5 1.1 1 23 428 450 428 451 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF30-204 - 623 2.7e-48 158.4 108.3 12 17 0.00034 0.33 11.9 2.6 1 23 456 478 456 479 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF30-204 - 623 2.7e-48 158.4 108.3 13 17 1.2e-05 0.012 16.4 0.7 1 23 484 506 484 507 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF30-204 - 623 2.7e-48 158.4 108.3 14 17 1.5e-05 0.015 16.1 0.3 1 23 512 534 512 535 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF30-204 - 623 2.7e-48 158.4 108.3 15 17 0.00038 0.38 11.7 0.1 1 23 540 562 540 563 0.91 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF30-204 - 623 2.7e-48 158.4 108.3 16 17 0.00045 0.45 11.5 0.7 1 23 568 590 568 591 0.80 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF30-204 - 623 2.7e-48 158.4 108.3 17 17 7.8e-07 0.00078 20.1 2.5 1 23 596 618 596 619 0.96 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF30-204 - 623 8.8e-28 95.7 115.2 1 17 0.007 6.9 6.8 0.7 3 18 149 164 149 170 0.76 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF30-204 - 623 8.8e-28 95.7 115.2 2 17 2.6 2.6e+03 -1.4 0.1 7 16 181 190 180 198 0.79 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF30-204 - 623 8.8e-28 95.7 115.2 3 17 0.092 91 3.2 0.3 3 10 205 212 205 226 0.88 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF30-204 - 623 8.8e-28 95.7 115.2 4 17 0.012 12 6.0 0.7 2 24 232 254 232 257 0.82 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF30-204 - 623 8.8e-28 95.7 115.2 5 17 0.0038 3.7 7.6 0.8 2 20 260 278 260 285 0.78 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF30-204 - 623 8.8e-28 95.7 115.2 6 17 0.00011 0.11 12.5 0.5 2 13 288 299 288 310 0.85 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF30-204 - 623 8.8e-28 95.7 115.2 7 17 6.1e-05 0.061 13.3 0.9 2 20 316 334 316 339 0.80 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF30-204 - 623 8.8e-28 95.7 115.2 8 17 0.0013 1.3 9.1 1.1 2 12 344 354 344 354 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF30-204 - 623 8.8e-28 95.7 115.2 9 17 0.0027 2.7 8.1 0.2 2 12 372 382 372 384 0.90 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF30-204 - 623 8.8e-28 95.7 115.2 10 17 3.6e-05 0.036 14.1 0.8 2 15 400 413 400 423 0.82 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF30-204 - 623 8.8e-28 95.7 115.2 11 17 0.00079 0.79 9.8 0.5 2 11 428 437 428 450 0.86 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF30-204 - 623 8.8e-28 95.7 115.2 12 17 9.7e-05 0.096 12.7 1.7 2 24 456 478 456 481 0.91 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF30-204 - 623 8.8e-28 95.7 115.2 13 17 7.6e-05 0.075 13.1 0.6 2 13 484 495 484 506 0.89 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF30-204 - 623 8.8e-28 95.7 115.2 14 17 2.3e-05 0.022 14.7 0.9 2 15 512 525 512 535 0.82 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF30-204 - 623 8.8e-28 95.7 115.2 15 17 0.00017 0.17 11.9 0.6 2 22 540 560 540 564 0.91 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF30-204 - 623 8.8e-28 95.7 115.2 16 17 0.00083 0.83 9.7 0.5 2 12 568 578 568 581 0.95 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF30-204 - 623 8.8e-28 95.7 115.2 17 17 2.8e-06 0.0028 17.6 2.9 2 26 596 620 596 621 0.96 C2H2-type zinc finger KRAB PF01352.27 42 ZNF30-204 - 623 1.1e-24 85.8 0.2 1 1 1.8e-27 1.8e-24 85.1 0.2 1 42 13 54 13 54 0.99 KRAB box zf-C2H2_jaz PF12171.8 27 ZNF30-204 - 623 2.3e-24 85.1 59.6 1 16 0.001 0.99 9.8 0.2 3 22 149 168 147 168 0.91 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF30-204 - 623 2.3e-24 85.1 59.6 2 16 0.29 2.9e+02 1.9 0.0 7 20 181 194 181 194 0.97 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF30-204 - 623 2.3e-24 85.1 59.6 3 16 0.0055 5.5 7.4 0.0 2 21 204 223 203 224 0.91 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF30-204 - 623 2.3e-24 85.1 59.6 4 16 2 2e+03 -0.7 0.1 2 11 232 241 231 242 0.88 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF30-204 - 623 2.3e-24 85.1 59.6 5 16 0.027 27 5.2 0.0 4 22 262 280 259 280 0.89 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF30-204 - 623 2.3e-24 85.1 59.6 6 16 0.0021 2.1 8.8 0.0 2 21 288 307 287 308 0.87 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF30-204 - 623 2.3e-24 85.1 59.6 7 16 0.057 57 4.2 0.1 2 11 316 325 315 334 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF30-204 - 623 2.3e-24 85.1 59.6 8 16 0.012 12 6.3 0.2 2 21 344 363 343 364 0.86 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF30-204 - 623 2.3e-24 85.1 59.6 9 16 0.0026 2.6 8.4 0.0 4 20 374 390 371 390 0.96 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF30-204 - 623 2.3e-24 85.1 59.6 10 16 0.00047 0.47 10.8 0.0 2 22 400 420 399 420 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF30-204 - 623 2.3e-24 85.1 59.6 11 16 3.3e-05 0.033 14.5 0.1 2 22 428 448 427 448 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF30-204 - 623 2.3e-24 85.1 59.6 12 16 0.05 50 4.4 0.4 2 21 456 475 455 476 0.80 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF30-204 - 623 2.3e-24 85.1 59.6 13 16 0.0001 0.1 12.9 0.1 2 20 484 502 483 503 0.95 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF30-204 - 623 2.3e-24 85.1 59.6 14 16 0.00032 0.32 11.3 0.0 2 22 512 532 511 532 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF30-204 - 623 2.3e-24 85.1 59.6 15 16 0.021 21 5.5 0.1 2 21 568 587 567 588 0.80 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF30-204 - 623 2.3e-24 85.1 59.6 16 16 0.0064 6.4 7.2 0.6 2 22 596 616 595 618 0.93 Zinc-finger double-stranded RNA-binding XPA_N PF01286.18 32 ZNF30-204 - 623 2.2e-21 75.6 68.6 1 17 0.0068 6.8 6.8 0.3 2 12 148 158 147 160 0.86 XPA protein N-terminal XPA_N PF01286.18 32 ZNF30-204 - 623 2.2e-21 75.6 68.6 2 17 3.1 3.1e+03 -1.7 0.1 5 11 179 185 179 187 0.84 XPA protein N-terminal XPA_N PF01286.18 32 ZNF30-204 - 623 2.2e-21 75.6 68.6 3 17 0.0049 4.9 7.3 0.0 2 15 204 217 203 222 0.87 XPA protein N-terminal XPA_N PF01286.18 32 ZNF30-204 - 623 2.2e-21 75.6 68.6 4 17 0.031 31 4.7 0.1 3 12 233 242 231 243 0.89 XPA protein N-terminal XPA_N PF01286.18 32 ZNF30-204 - 623 2.2e-21 75.6 68.6 5 17 0.002 2 8.5 0.2 4 18 262 277 261 279 0.85 XPA protein N-terminal XPA_N PF01286.18 32 ZNF30-204 - 623 2.2e-21 75.6 68.6 6 17 0.0018 1.8 8.7 0.5 3 14 289 300 287 301 0.91 XPA protein N-terminal XPA_N PF01286.18 32 ZNF30-204 - 623 2.2e-21 75.6 68.6 7 17 0.013 13 5.9 0.2 3 12 317 326 315 327 0.88 XPA protein N-terminal XPA_N PF01286.18 32 ZNF30-204 - 623 2.2e-21 75.6 68.6 8 17 0.0027 2.7 8.1 0.2 3 14 345 356 343 362 0.79 XPA protein N-terminal XPA_N PF01286.18 32 ZNF30-204 - 623 2.2e-21 75.6 68.6 9 17 0.0095 9.5 6.4 0.0 4 18 374 389 372 390 0.79 XPA protein N-terminal XPA_N PF01286.18 32 ZNF30-204 - 623 2.2e-21 75.6 68.6 10 17 0.00074 0.74 9.9 0.1 3 18 401 417 399 419 0.82 XPA protein N-terminal XPA_N PF01286.18 32 ZNF30-204 - 623 2.2e-21 75.6 68.6 11 17 0.013 13 6.0 0.2 3 11 429 437 427 439 0.88 XPA protein N-terminal XPA_N PF01286.18 32 ZNF30-204 - 623 2.2e-21 75.6 68.6 12 17 0.013 13 5.9 0.2 3 11 457 465 455 467 0.89 XPA protein N-terminal XPA_N PF01286.18 32 ZNF30-204 - 623 2.2e-21 75.6 68.6 13 17 0.00098 0.97 9.5 0.1 3 18 485 501 483 502 0.79 XPA protein N-terminal XPA_N PF01286.18 32 ZNF30-204 - 623 2.2e-21 75.6 68.6 14 17 0.001 1 9.5 0.1 3 18 513 529 511 531 0.81 XPA protein N-terminal XPA_N PF01286.18 32 ZNF30-204 - 623 2.2e-21 75.6 68.6 15 17 0.049 48 4.1 0.1 3 12 541 550 539 551 0.88 XPA protein N-terminal XPA_N PF01286.18 32 ZNF30-204 - 623 2.2e-21 75.6 68.6 16 17 0.0016 1.6 8.9 0.1 3 19 569 586 567 589 0.86 XPA protein N-terminal XPA_N PF01286.18 32 ZNF30-204 - 623 2.2e-21 75.6 68.6 17 17 0.014 14 5.8 0.1 3 14 597 608 595 611 0.88 XPA protein N-terminal Zn-ribbon_8 PF09723.10 40 ZNF30-204 - 623 1.9e-17 63.1 93.7 1 17 2.5 2.5e+03 -1.3 0.2 10 31 104 124 103 131 0.74 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF30-204 - 623 1.9e-17 63.1 93.7 2 17 0.024 24 5.1 1.0 16 35 139 156 124 159 0.63 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF30-204 - 623 1.9e-17 63.1 93.7 3 17 0.048 48 4.2 0.4 7 16 149 158 149 170 0.83 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF30-204 - 623 1.9e-17 63.1 93.7 4 17 0.025 25 5.1 0.4 10 35 180 212 175 216 0.64 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF30-204 - 623 1.9e-17 63.1 93.7 5 17 0.0015 1.5 9.0 4.0 6 34 232 267 231 270 0.89 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF30-204 - 623 1.9e-17 63.1 93.7 6 17 0.00028 0.28 11.3 5.2 6 34 260 295 259 299 0.89 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF30-204 - 623 1.9e-17 63.1 93.7 7 17 2e-05 0.02 15.0 5.5 6 34 288 323 287 328 0.92 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF30-204 - 623 1.9e-17 63.1 93.7 8 17 1.1e-05 0.011 15.8 4.6 6 36 316 353 315 356 0.91 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF30-204 - 623 1.9e-17 63.1 93.7 9 17 2.7e-05 0.027 14.6 2.7 6 38 344 383 343 384 0.89 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF30-204 - 623 1.9e-17 63.1 93.7 10 17 8.8e-06 0.0088 16.1 3.8 6 34 400 435 399 441 0.92 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF30-204 - 623 1.9e-17 63.1 93.7 11 17 6.8e-05 0.068 13.3 5.3 6 36 428 465 427 469 0.90 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF30-204 - 623 1.9e-17 63.1 93.7 12 17 3.6e-05 0.035 14.2 5.3 6 38 456 495 455 496 0.84 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF30-204 - 623 1.9e-17 63.1 93.7 13 17 7.2e-05 0.072 13.2 5.7 6 34 484 519 481 522 0.84 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF30-204 - 623 1.9e-17 63.1 93.7 14 17 3.4e-05 0.034 14.3 4.4 6 35 512 548 511 550 0.92 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF30-204 - 623 1.9e-17 63.1 93.7 15 17 0.00017 0.17 12.1 4.4 6 35 540 576 539 578 0.88 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF30-204 - 623 1.9e-17 63.1 93.7 16 17 0.00024 0.24 11.5 4.2 6 36 568 605 567 608 0.90 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF30-204 - 623 1.9e-17 63.1 93.7 17 17 0.012 12 6.2 0.3 6 16 596 606 595 612 0.88 Zinc ribbon domain zf_UBZ PF18439.1 32 ZNF30-204 - 623 3.1e-14 52.3 63.4 1 17 0.038 38 4.0 0.2 5 14 150 159 148 167 0.77 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF30-204 - 623 3.1e-14 52.3 63.4 2 17 8.6 8.6e+03 -3.5 0.0 6 12 179 185 179 187 0.80 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF30-204 - 623 3.1e-14 52.3 63.4 3 17 0.0063 6.2 6.5 0.1 4 20 205 222 203 223 0.80 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF30-204 - 623 3.1e-14 52.3 63.4 4 17 0.012 12 5.6 0.0 3 20 232 250 230 251 0.81 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF30-204 - 623 3.1e-14 52.3 63.4 5 17 0.014 14 5.3 0.1 4 15 261 272 258 279 0.79 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF30-204 - 623 3.1e-14 52.3 63.4 6 17 0.0047 4.6 6.9 0.2 3 15 288 300 286 307 0.80 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF30-204 - 623 3.1e-14 52.3 63.4 7 17 0.0026 2.6 7.7 0.1 3 21 316 335 314 335 0.84 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF30-204 - 623 3.1e-14 52.3 63.4 8 17 0.034 34 4.1 0.1 3 14 344 355 342 360 0.81 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF30-204 - 623 3.1e-14 52.3 63.4 9 17 0.06 59 3.4 0.1 3 15 372 384 370 390 0.83 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF30-204 - 623 3.1e-14 52.3 63.4 10 17 0.0095 9.4 5.9 0.1 3 14 400 411 398 419 0.82 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF30-204 - 623 3.1e-14 52.3 63.4 11 17 0.011 11 5.7 0.3 3 20 428 446 426 447 0.76 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF30-204 - 623 3.1e-14 52.3 63.4 12 17 0.0065 6.4 6.5 0.5 3 20 456 474 454 475 0.86 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF30-204 - 623 3.1e-14 52.3 63.4 13 17 0.004 4 7.1 0.1 3 15 484 496 482 503 0.82 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF30-204 - 623 3.1e-14 52.3 63.4 14 17 0.0079 7.9 6.2 0.1 3 14 512 523 510 531 0.82 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF30-204 - 623 3.1e-14 52.3 63.4 15 17 0.043 43 3.8 0.1 3 14 540 551 538 559 0.78 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF30-204 - 623 3.1e-14 52.3 63.4 16 17 0.0077 7.7 6.2 0.1 3 21 568 587 566 587 0.85 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF30-204 - 623 3.1e-14 52.3 63.4 17 17 0.025 25 4.6 0.2 3 12 596 605 594 612 0.88 Ubiquitin-Binding Zinc Finger zinc_ribbon_15 PF17032.5 86 ZNF30-204 - 623 4.1e-08 33.9 61.5 1 9 0.32 3.2e+02 2.1 3.1 45 77 128 159 94 166 0.58 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF30-204 - 623 4.1e-08 33.9 61.5 2 9 0.011 11 6.8 0.1 38 80 176 218 167 222 0.80 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF30-204 - 623 4.1e-08 33.9 61.5 3 9 0.057 57 4.6 0.4 33 75 227 269 221 274 0.84 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF30-204 - 623 4.1e-08 33.9 61.5 4 9 0.00029 0.29 11.9 1.7 26 74 276 324 268 329 0.86 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF30-204 - 623 4.1e-08 33.9 61.5 5 9 0.0036 3.6 8.4 0.3 33 76 339 382 333 387 0.85 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF30-204 - 623 4.1e-08 33.9 61.5 6 9 0.0024 2.4 9.0 1.0 32 75 394 437 385 446 0.84 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF30-204 - 623 4.1e-08 33.9 61.5 7 9 0.00078 0.78 10.5 1.7 32 76 450 494 443 498 0.87 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF30-204 - 623 4.1e-08 33.9 61.5 8 9 0.0012 1.2 9.9 1.2 26 74 500 548 496 552 0.86 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF30-204 - 623 4.1e-08 33.9 61.5 9 9 0.0026 2.6 8.9 0.4 33 76 563 606 555 610 0.83 zinc-ribbon family zf-C2H2_11 PF16622.5 29 ZNF30-204 - 623 1e-07 31.6 75.2 1 17 0.015 15 5.5 0.1 6 16 149 159 146 169 0.82 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF30-204 - 623 1e-07 31.6 75.2 2 17 7.4 7.3e+03 -3.2 0.1 9 26 180 197 180 197 0.75 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF30-204 - 623 1e-07 31.6 75.2 3 17 0.46 4.6e+02 0.7 0.2 6 12 205 211 202 225 0.79 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF30-204 - 623 1e-07 31.6 75.2 4 17 0.068 68 3.4 0.1 7 23 234 250 231 252 0.91 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF30-204 - 623 1e-07 31.6 75.2 5 17 0.098 97 2.9 0.3 7 26 262 281 260 282 0.86 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF30-204 - 623 1e-07 31.6 75.2 6 17 0.00088 0.88 9.4 0.1 6 26 289 309 286 310 0.93 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF30-204 - 623 1e-07 31.6 75.2 7 17 0.00015 0.15 11.8 0.1 6 26 317 337 314 338 0.91 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF30-204 - 623 1e-07 31.6 75.2 8 17 0.44 4.4e+02 0.8 0.5 7 25 346 364 343 366 0.73 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF30-204 - 623 1e-07 31.6 75.2 9 17 0.028 28 4.6 0.4 7 23 374 390 372 393 0.80 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF30-204 - 623 1e-07 31.6 75.2 10 17 0.028 28 4.6 0.1 6 26 401 421 398 422 0.87 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF30-204 - 623 1e-07 31.6 75.2 11 17 0.085 85 3.0 0.2 6 23 429 446 426 450 0.80 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF30-204 - 623 1e-07 31.6 75.2 12 17 0.0065 6.5 6.6 0.3 6 26 457 477 454 478 0.93 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF30-204 - 623 1e-07 31.6 75.2 13 17 0.024 23 4.8 0.2 6 26 485 505 482 506 0.89 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF30-204 - 623 1e-07 31.6 75.2 14 17 0.0015 1.5 8.7 0.1 6 26 513 533 511 534 0.91 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF30-204 - 623 1e-07 31.6 75.2 15 17 0.075 74 3.2 0.1 6 20 541 555 538 560 0.82 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF30-204 - 623 1e-07 31.6 75.2 16 17 0.71 7e+02 0.1 0.1 7 14 570 577 567 589 0.80 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF30-204 - 623 1e-07 31.6 75.2 17 17 0.0068 6.8 6.5 0.3 5 24 596 619 593 622 0.63 zinc-finger C2H2-type zf-trcl PF13451.6 48 ZNF30-204 - 623 3.9e-07 29.8 67.8 1 16 0.027 27 4.8 0.2 32 41 146 155 139 161 0.72 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF30-204 - 623 3.9e-07 29.8 67.8 2 16 0.03 30 4.6 0.2 3 12 202 211 200 213 0.85 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF30-204 - 623 3.9e-07 29.8 67.8 3 16 0.35 3.5e+02 1.2 0.1 3 14 230 241 229 244 0.86 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF30-204 - 623 3.9e-07 29.8 67.8 4 16 0.077 77 3.3 0.1 3 14 258 269 256 280 0.83 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF30-204 - 623 3.9e-07 29.8 67.8 5 16 0.037 37 4.3 0.1 3 14 286 297 284 300 0.87 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF30-204 - 623 3.9e-07 29.8 67.8 6 16 0.01 10 6.1 0.1 3 15 314 326 312 330 0.88 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF30-204 - 623 3.9e-07 29.8 67.8 7 16 0.031 30 4.6 0.4 3 14 342 353 340 369 0.87 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF30-204 - 623 3.9e-07 29.8 67.8 8 16 0.093 92 3.0 0.2 3 14 370 381 368 382 0.87 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF30-204 - 623 3.9e-07 29.8 67.8 9 16 0.045 45 4.0 0.1 3 14 398 409 396 410 0.87 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF30-204 - 623 3.9e-07 29.8 67.8 10 16 0.012 12 5.8 0.1 3 15 426 438 424 443 0.90 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF30-204 - 623 3.9e-07 29.8 67.8 11 16 0.045 45 4.0 0.1 3 14 454 465 452 468 0.88 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF30-204 - 623 3.9e-07 29.8 67.8 12 16 0.048 48 4.0 0.2 3 14 482 493 480 494 0.89 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF30-204 - 623 3.9e-07 29.8 67.8 13 16 0.07 69 3.4 0.3 3 14 510 521 509 522 0.87 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF30-204 - 623 3.9e-07 29.8 67.8 14 16 0.064 64 3.6 0.1 3 15 538 550 536 554 0.88 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF30-204 - 623 3.9e-07 29.8 67.8 15 16 0.032 32 4.5 0.1 3 14 566 577 564 582 0.89 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF30-204 - 623 3.9e-07 29.8 67.8 16 16 0.0028 2.8 7.9 0.2 3 17 594 608 592 610 0.87 Probable zinc-ribbon domain # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF30-204.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF30-204.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF30-204.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF30-204.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF30-204.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:03:34 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF30-205.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF30-205.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF30-205.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF30-205.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF30-205.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:03:35 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZNF30-206 - 542 6.1e-133 427.9 124.2 1 18 3e-06 0.0025 18.2 0.8 4 26 56 78 54 78 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF30-206 - 542 6.1e-133 427.9 124.2 2 18 3.5e-07 0.00029 21.1 0.1 2 25 82 105 81 106 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF30-206 - 542 6.1e-133 427.9 124.2 3 18 4.5e-08 3.7e-05 24.0 0.4 2 23 110 131 109 133 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF30-206 - 542 6.1e-133 427.9 124.2 4 18 2.4e-09 2e-06 28.0 0.3 2 24 138 160 137 161 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF30-206 - 542 6.1e-133 427.9 124.2 5 18 4.2e-10 3.4e-07 30.4 0.7 2 26 166 190 165 190 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF30-206 - 542 6.1e-133 427.9 124.2 6 18 7.2e-12 5.9e-09 36.0 0.7 2 26 194 218 193 218 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF30-206 - 542 6.1e-133 427.9 124.2 7 18 1.1e-11 8.7e-09 35.4 1.1 2 25 222 245 222 245 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF30-206 - 542 6.1e-133 427.9 124.2 8 18 1.9e-11 1.6e-08 34.6 0.6 2 24 250 272 249 273 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF30-206 - 542 6.1e-133 427.9 124.2 9 18 0.0003 0.24 11.9 0.8 4 25 280 301 278 302 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF30-206 - 542 6.1e-133 427.9 124.2 10 18 8.9e-11 7.2e-08 32.5 0.5 2 26 306 330 305 330 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF30-206 - 542 6.1e-133 427.9 124.2 11 18 3.2e-12 2.6e-09 37.1 0.2 2 25 334 357 333 358 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF30-206 - 542 6.1e-133 427.9 124.2 12 18 1.4e-11 1.2e-08 35.0 0.6 2 24 362 384 361 385 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF30-206 - 542 6.1e-133 427.9 124.2 13 18 2e-09 1.7e-06 28.2 2.8 1 25 389 413 389 414 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF30-206 - 542 6.1e-133 427.9 124.2 14 18 5.2e-12 4.3e-09 36.4 0.8 2 26 418 442 417 442 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF30-206 - 542 6.1e-133 427.9 124.2 15 18 5.2e-12 4.3e-09 36.4 0.5 2 25 446 469 445 469 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF30-206 - 542 6.1e-133 427.9 124.2 16 18 7.2e-10 5.9e-07 29.6 0.4 5 24 477 496 474 497 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF30-206 - 542 6.1e-133 427.9 124.2 17 18 7.5e-11 6.1e-08 32.7 3.6 2 25 502 525 502 526 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF30-206 - 542 6.1e-133 427.9 124.2 18 18 0.27 2.2e+02 2.5 0.2 1 10 529 538 529 541 0.82 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZNF30-206 - 542 2.1e-89 289.3 106.9 1 17 2.3e-06 0.0018 18.6 2.1 2 23 68 89 68 89 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF30-206 - 542 2.1e-89 289.3 106.9 2 17 0.0018 1.4 9.5 0.0 5 23 99 117 97 117 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF30-206 - 542 2.1e-89 289.3 106.9 3 17 2.3e-05 0.019 15.4 0.4 2 23 124 145 123 145 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF30-206 - 542 2.1e-89 289.3 106.9 4 17 2.4e-05 0.019 15.4 0.2 1 23 151 173 151 173 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF30-206 - 542 2.1e-89 289.3 106.9 5 17 1.9e-07 0.00016 22.0 0.2 3 23 181 201 179 201 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF30-206 - 542 2.1e-89 289.3 106.9 6 17 6.3e-09 5.1e-06 26.6 0.2 1 23 207 229 207 229 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF30-206 - 542 2.1e-89 289.3 106.9 7 17 3.5e-08 2.9e-05 24.3 0.5 1 23 235 257 235 257 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF30-206 - 542 2.1e-89 289.3 106.9 8 17 9.4e-07 0.00077 19.8 1.4 1 23 263 285 263 285 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF30-206 - 542 2.1e-89 289.3 106.9 9 17 2.7e-07 0.00022 21.5 0.3 3 23 293 313 291 313 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF30-206 - 542 2.1e-89 289.3 106.9 10 17 3.1e-08 2.6e-05 24.4 0.2 1 23 319 341 319 341 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF30-206 - 542 2.1e-89 289.3 106.9 11 17 1.2e-08 9.6e-06 25.8 1.0 1 23 347 369 347 369 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF30-206 - 542 2.1e-89 289.3 106.9 12 17 1.8e-06 0.0015 18.9 3.0 1 23 375 397 375 397 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF30-206 - 542 2.1e-89 289.3 106.9 13 17 1.3e-08 1.1e-05 25.6 0.6 1 23 403 425 403 425 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF30-206 - 542 2.1e-89 289.3 106.9 14 17 5.2e-08 4.2e-05 23.8 0.2 1 23 431 453 431 453 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF30-206 - 542 2.1e-89 289.3 106.9 15 17 3.9e-06 0.0032 17.8 0.1 1 23 459 481 459 481 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF30-206 - 542 2.1e-89 289.3 106.9 16 17 3.5e-07 0.00029 21.1 0.5 1 23 487 509 487 509 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF30-206 - 542 2.1e-89 289.3 106.9 17 17 4.7e-09 3.8e-06 27.0 3.0 1 23 515 537 515 537 0.99 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZNF30-206 - 542 1.8e-49 162.0 108.3 1 17 0.00016 0.13 13.2 0.9 2 23 68 89 67 90 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF30-206 - 542 1.8e-49 162.0 108.3 2 17 0.97 7.9e+02 1.4 0.0 5 19 99 113 98 117 0.89 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF30-206 - 542 1.8e-49 162.0 108.3 3 17 0.00083 0.68 10.9 0.4 2 23 124 145 123 146 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF30-206 - 542 1.8e-49 162.0 108.3 4 17 0.00011 0.091 13.7 0.2 1 23 151 173 151 174 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF30-206 - 542 1.8e-49 162.0 108.3 5 17 5.6e-05 0.046 14.6 0.4 1 23 179 201 179 202 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF30-206 - 542 1.8e-49 162.0 108.3 6 17 2.3e-06 0.0019 18.9 0.4 1 23 207 229 207 230 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF30-206 - 542 1.8e-49 162.0 108.3 7 17 1.2e-05 0.0098 16.7 0.5 1 23 235 257 235 258 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF30-206 - 542 1.8e-49 162.0 108.3 8 17 0.00026 0.21 12.5 1.1 1 23 263 285 263 286 0.83 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF30-206 - 542 1.8e-49 162.0 108.3 9 17 0.0011 0.89 10.6 0.4 2 19 292 309 291 313 0.88 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF30-206 - 542 1.8e-49 162.0 108.3 10 17 1.9e-05 0.015 16.0 0.3 1 23 319 341 319 342 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF30-206 - 542 1.8e-49 162.0 108.3 11 17 2.4e-05 0.02 15.7 1.1 1 23 347 369 347 370 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF30-206 - 542 1.8e-49 162.0 108.3 12 17 0.00035 0.28 12.1 2.6 1 23 375 397 375 398 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF30-206 - 542 1.8e-49 162.0 108.3 13 17 1.2e-05 0.0099 16.6 0.7 1 23 403 425 403 426 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF30-206 - 542 1.8e-49 162.0 108.3 14 17 1.5e-05 0.013 16.3 0.3 1 23 431 453 431 454 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF30-206 - 542 1.8e-49 162.0 108.3 15 17 0.00039 0.32 12.0 0.1 1 23 459 481 459 482 0.91 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF30-206 - 542 1.8e-49 162.0 108.3 16 17 0.00046 0.38 11.7 0.7 1 23 487 509 487 510 0.80 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF30-206 - 542 1.8e-49 162.0 108.3 17 17 8.1e-07 0.00066 20.3 2.5 1 23 515 537 515 538 0.96 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF30-206 - 542 8e-29 99.1 115.2 1 17 0.0073 5.9 7.0 0.7 3 18 68 83 68 89 0.76 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF30-206 - 542 8e-29 99.1 115.2 2 17 2.7 2.2e+03 -1.2 0.1 7 16 100 109 99 117 0.79 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF30-206 - 542 8e-29 99.1 115.2 3 17 0.096 78 3.4 0.3 3 10 124 131 124 145 0.88 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF30-206 - 542 8e-29 99.1 115.2 4 17 0.013 10 6.2 0.7 2 24 151 173 151 176 0.82 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF30-206 - 542 8e-29 99.1 115.2 5 17 0.0039 3.2 7.9 0.8 2 20 179 197 179 204 0.78 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF30-206 - 542 8e-29 99.1 115.2 6 17 0.00011 0.093 12.8 0.5 2 13 207 218 207 229 0.85 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF30-206 - 542 8e-29 99.1 115.2 7 17 6.4e-05 0.052 13.6 0.9 2 20 235 253 235 258 0.80 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF30-206 - 542 8e-29 99.1 115.2 8 17 0.0014 1.2 9.3 1.1 2 12 263 273 263 273 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF30-206 - 542 8e-29 99.1 115.2 9 17 0.0029 2.3 8.3 0.2 2 12 291 301 291 303 0.90 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF30-206 - 542 8e-29 99.1 115.2 10 17 3.7e-05 0.031 14.3 0.8 2 15 319 332 319 342 0.82 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF30-206 - 542 8e-29 99.1 115.2 11 17 0.00083 0.68 10.0 0.5 2 11 347 356 347 369 0.86 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF30-206 - 542 8e-29 99.1 115.2 12 17 0.0001 0.082 12.9 1.7 2 24 375 397 375 400 0.91 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF30-206 - 542 8e-29 99.1 115.2 13 17 7.9e-05 0.064 13.3 0.6 2 13 403 414 403 425 0.89 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF30-206 - 542 8e-29 99.1 115.2 14 17 2.3e-05 0.019 14.9 0.9 2 15 431 444 431 454 0.82 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF30-206 - 542 8e-29 99.1 115.2 15 17 0.00018 0.14 12.2 0.6 2 22 459 479 459 483 0.91 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF30-206 - 542 8e-29 99.1 115.2 16 17 0.00087 0.71 9.9 0.5 2 12 487 497 487 500 0.95 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF30-206 - 542 8e-29 99.1 115.2 17 17 2.9e-06 0.0023 17.9 2.9 2 26 515 539 515 540 0.96 C2H2-type zinc finger zf-C2H2_jaz PF12171.8 27 ZNF30-206 - 542 1.4e-27 95.3 52.4 1 16 0.001 0.85 10.0 0.2 3 22 68 87 66 87 0.91 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF30-206 - 542 1.4e-27 95.3 52.4 2 16 0.31 2.5e+02 2.1 0.0 7 20 100 113 100 113 0.97 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF30-206 - 542 1.4e-27 95.3 52.4 3 16 0.0057 4.6 7.6 0.0 2 21 123 142 122 143 0.91 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF30-206 - 542 1.4e-27 95.3 52.4 4 16 2.1 1.7e+03 -0.5 0.1 2 11 151 160 150 161 0.88 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF30-206 - 542 1.4e-27 95.3 52.4 5 16 0.028 23 5.4 0.0 4 22 181 199 178 199 0.89 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF30-206 - 542 1.4e-27 95.3 52.4 6 16 0.0022 1.8 9.0 0.0 2 21 207 226 206 227 0.87 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF30-206 - 542 1.4e-27 95.3 52.4 7 16 0.06 49 4.4 0.1 2 11 235 244 234 253 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF30-206 - 542 1.4e-27 95.3 52.4 8 16 0.012 10 6.6 0.2 2 21 263 282 262 283 0.86 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF30-206 - 542 1.4e-27 95.3 52.4 9 16 0.0027 2.2 8.7 0.0 4 20 293 309 290 309 0.96 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF30-206 - 542 1.4e-27 95.3 52.4 10 16 0.00049 0.4 11.0 0.0 2 22 319 339 318 339 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF30-206 - 542 1.4e-27 95.3 52.4 11 16 3.4e-05 0.028 14.7 0.1 2 22 347 367 346 367 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF30-206 - 542 1.4e-27 95.3 52.4 12 16 0.052 42 4.6 0.4 2 21 375 394 374 395 0.80 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF30-206 - 542 1.4e-27 95.3 52.4 13 16 0.00011 0.086 13.1 0.1 2 20 403 421 402 422 0.95 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF30-206 - 542 1.4e-27 95.3 52.4 14 16 0.00034 0.28 11.5 0.0 2 22 431 451 430 451 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF30-206 - 542 1.4e-27 95.3 52.4 15 16 0.022 18 5.7 0.1 2 21 487 506 486 507 0.80 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF30-206 - 542 1.4e-27 95.3 52.4 16 16 0.0066 5.4 7.4 0.6 2 22 515 535 514 537 0.93 Zinc-finger double-stranded RNA-binding XPA_N PF01286.18 32 ZNF30-206 - 542 1.7e-22 79.1 68.6 1 17 0.0072 5.8 7.0 0.3 2 12 67 77 66 79 0.86 XPA protein N-terminal XPA_N PF01286.18 32 ZNF30-206 - 542 1.7e-22 79.1 68.6 2 17 3.3 2.7e+03 -1.5 0.1 5 11 98 104 98 106 0.84 XPA protein N-terminal XPA_N PF01286.18 32 ZNF30-206 - 542 1.7e-22 79.1 68.6 3 17 0.0052 4.2 7.5 0.0 2 15 123 136 122 141 0.87 XPA protein N-terminal XPA_N PF01286.18 32 ZNF30-206 - 542 1.7e-22 79.1 68.6 4 17 0.032 26 4.9 0.1 3 12 152 161 150 162 0.89 XPA protein N-terminal XPA_N PF01286.18 32 ZNF30-206 - 542 1.7e-22 79.1 68.6 5 17 0.0021 1.7 8.7 0.2 4 18 181 196 180 198 0.85 XPA protein N-terminal XPA_N PF01286.18 32 ZNF30-206 - 542 1.7e-22 79.1 68.6 6 17 0.0019 1.5 8.9 0.5 3 14 208 219 206 220 0.91 XPA protein N-terminal XPA_N PF01286.18 32 ZNF30-206 - 542 1.7e-22 79.1 68.6 7 17 0.014 11 6.1 0.2 3 12 236 245 234 246 0.88 XPA protein N-terminal XPA_N PF01286.18 32 ZNF30-206 - 542 1.7e-22 79.1 68.6 8 17 0.0028 2.3 8.3 0.2 3 14 264 275 262 281 0.79 XPA protein N-terminal XPA_N PF01286.18 32 ZNF30-206 - 542 1.7e-22 79.1 68.6 9 17 0.0099 8.1 6.6 0.0 4 18 293 308 291 309 0.79 XPA protein N-terminal XPA_N PF01286.18 32 ZNF30-206 - 542 1.7e-22 79.1 68.6 10 17 0.00077 0.63 10.1 0.1 3 18 320 336 318 338 0.82 XPA protein N-terminal XPA_N PF01286.18 32 ZNF30-206 - 542 1.7e-22 79.1 68.6 11 17 0.013 11 6.2 0.2 3 11 348 356 346 358 0.88 XPA protein N-terminal XPA_N PF01286.18 32 ZNF30-206 - 542 1.7e-22 79.1 68.6 12 17 0.014 12 6.1 0.2 3 11 376 384 374 386 0.89 XPA protein N-terminal XPA_N PF01286.18 32 ZNF30-206 - 542 1.7e-22 79.1 68.6 13 17 0.001 0.83 9.7 0.1 3 18 404 420 402 421 0.79 XPA protein N-terminal XPA_N PF01286.18 32 ZNF30-206 - 542 1.7e-22 79.1 68.6 14 17 0.0011 0.86 9.7 0.1 3 18 432 448 430 450 0.81 XPA protein N-terminal XPA_N PF01286.18 32 ZNF30-206 - 542 1.7e-22 79.1 68.6 15 17 0.051 42 4.3 0.1 3 12 460 469 458 470 0.88 XPA protein N-terminal XPA_N PF01286.18 32 ZNF30-206 - 542 1.7e-22 79.1 68.6 16 17 0.0016 1.3 9.1 0.1 3 19 488 505 486 508 0.86 XPA protein N-terminal XPA_N PF01286.18 32 ZNF30-206 - 542 1.7e-22 79.1 68.6 17 17 0.015 12 6.0 0.1 3 14 516 527 514 530 0.88 XPA protein N-terminal Zn-ribbon_8 PF09723.10 40 ZNF30-206 - 542 2.9e-18 65.7 93.7 1 15 2.5 2.1e+03 -1.0 0.2 10 31 23 43 22 51 0.74 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF30-206 - 542 2.9e-18 65.7 93.7 2 15 0.024 20 5.4 1.0 16 35 58 75 43 79 0.64 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF30-206 - 542 2.9e-18 65.7 93.7 3 15 0.048 39 4.5 0.4 7 16 68 77 67 89 0.83 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF30-206 - 542 2.9e-18 65.7 93.7 4 15 0.025 20 5.4 0.3 10 35 99 131 94 134 0.63 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF30-206 - 542 2.9e-18 65.7 93.7 5 15 0.0016 1.3 9.2 4.2 6 34 151 186 150 190 0.88 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF30-206 - 542 2.9e-18 65.7 93.7 6 15 0.00026 0.21 11.7 5.0 6 34 179 214 178 218 0.89 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF30-206 - 542 2.9e-18 65.7 93.7 7 15 2e-05 0.016 15.3 5.4 6 34 207 242 206 246 0.92 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF30-206 - 542 2.9e-18 65.7 93.7 8 15 0.00027 0.22 11.7 9.2 6 36 235 272 234 304 0.85 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF30-206 - 542 2.9e-18 65.7 93.7 9 15 1.1e-05 0.0089 16.1 4.1 6 34 319 354 318 360 0.92 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF30-206 - 542 2.9e-18 65.7 93.7 10 15 6.8e-05 0.055 13.6 5.2 6 36 347 384 346 388 0.90 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF30-206 - 542 2.9e-18 65.7 93.7 11 15 3.2e-05 0.026 14.6 5.2 6 38 375 414 374 416 0.84 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF30-206 - 542 2.9e-18 65.7 93.7 12 15 6.9e-05 0.056 13.6 5.7 6 34 403 438 400 442 0.84 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF30-206 - 542 2.9e-18 65.7 93.7 13 15 2.7e-05 0.022 14.9 4.2 6 35 431 467 429 470 0.92 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF30-206 - 542 2.9e-18 65.7 93.7 14 15 0.00015 0.12 12.5 4.3 6 35 459 495 458 497 0.88 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF30-206 - 542 2.9e-18 65.7 93.7 15 15 0.00027 0.22 11.6 4.4 6 36 487 524 486 527 0.90 Zinc ribbon domain zf_UBZ PF18439.1 32 ZNF30-206 - 542 2.5e-15 55.7 63.4 1 17 0.04 32 4.2 0.2 5 14 69 78 67 86 0.77 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF30-206 - 542 2.5e-15 55.7 63.4 2 17 9.1 7.4e+03 -3.3 0.0 6 12 98 104 98 106 0.80 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF30-206 - 542 2.5e-15 55.7 63.4 3 17 0.0065 5.3 6.7 0.1 4 20 124 141 122 142 0.80 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF30-206 - 542 2.5e-15 55.7 63.4 4 17 0.012 10 5.8 0.0 3 20 151 169 149 170 0.81 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF30-206 - 542 2.5e-15 55.7 63.4 5 17 0.015 12 5.6 0.1 4 15 180 191 177 198 0.79 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF30-206 - 542 2.5e-15 55.7 63.4 6 17 0.0049 4 7.1 0.2 3 15 207 219 205 226 0.80 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF30-206 - 542 2.5e-15 55.7 63.4 7 17 0.0027 2.2 8.0 0.1 3 21 235 254 233 254 0.84 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF30-206 - 542 2.5e-15 55.7 63.4 8 17 0.036 29 4.4 0.1 3 14 263 274 261 279 0.81 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF30-206 - 542 2.5e-15 55.7 63.4 9 17 0.062 51 3.6 0.1 3 15 291 303 289 309 0.83 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF30-206 - 542 2.5e-15 55.7 63.4 10 17 0.0099 8.1 6.1 0.1 3 14 319 330 317 338 0.82 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF30-206 - 542 2.5e-15 55.7 63.4 11 17 0.011 9.3 6.0 0.3 3 20 347 365 345 366 0.76 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF30-206 - 542 2.5e-15 55.7 63.4 12 17 0.0067 5.5 6.7 0.5 3 20 375 393 373 394 0.86 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF30-206 - 542 2.5e-15 55.7 63.4 13 17 0.0042 3.4 7.3 0.1 3 15 403 415 401 422 0.82 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF30-206 - 542 2.5e-15 55.7 63.4 14 17 0.0083 6.7 6.4 0.1 3 14 431 442 429 450 0.82 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF30-206 - 542 2.5e-15 55.7 63.4 15 17 0.045 37 4.0 0.1 3 14 459 470 457 478 0.78 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF30-206 - 542 2.5e-15 55.7 63.4 16 17 0.008 6.6 6.4 0.1 3 21 487 506 485 506 0.85 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF30-206 - 542 2.5e-15 55.7 63.4 17 17 0.026 21 4.8 0.2 3 12 515 524 513 531 0.88 Ubiquitin-Binding Zinc Finger zf-C2H2_11 PF16622.5 29 ZNF30-206 - 542 4.2e-09 36.0 74.2 1 17 0.015 13 5.7 0.1 6 16 68 78 65 88 0.82 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF30-206 - 542 4.2e-09 36.0 74.2 2 17 6 4.9e+03 -2.6 0.0 9 26 99 116 98 116 0.76 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF30-206 - 542 4.2e-09 36.0 74.2 3 17 0.49 4e+02 0.9 0.2 6 12 124 130 121 144 0.79 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF30-206 - 542 4.2e-09 36.0 74.2 4 17 0.071 58 3.6 0.1 7 23 153 169 150 171 0.91 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF30-206 - 542 4.2e-09 36.0 74.2 5 17 0.1 83 3.1 0.3 7 26 181 200 179 201 0.86 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF30-206 - 542 4.2e-09 36.0 74.2 6 17 0.00091 0.75 9.6 0.1 6 26 208 228 205 229 0.93 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF30-206 - 542 4.2e-09 36.0 74.2 7 17 0.00016 0.13 12.1 0.1 6 26 236 256 233 257 0.91 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF30-206 - 542 4.2e-09 36.0 74.2 8 17 0.46 3.7e+02 1.0 0.5 7 25 265 283 262 285 0.73 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF30-206 - 542 4.2e-09 36.0 74.2 9 17 0.029 23 4.8 0.4 7 23 293 309 291 312 0.80 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF30-206 - 542 4.2e-09 36.0 74.2 10 17 0.029 23 4.8 0.1 6 26 320 340 317 341 0.87 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF30-206 - 542 4.2e-09 36.0 74.2 11 17 0.089 73 3.3 0.2 6 23 348 365 345 369 0.80 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF30-206 - 542 4.2e-09 36.0 74.2 12 17 0.0068 5.6 6.8 0.3 6 26 376 396 373 397 0.93 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF30-206 - 542 4.2e-09 36.0 74.2 13 17 0.024 20 5.1 0.2 6 26 404 424 401 425 0.89 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF30-206 - 542 4.2e-09 36.0 74.2 14 17 0.0016 1.3 8.9 0.1 6 26 432 452 430 453 0.91 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF30-206 - 542 4.2e-09 36.0 74.2 15 17 0.078 64 3.4 0.1 6 20 460 474 457 479 0.82 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF30-206 - 542 4.2e-09 36.0 74.2 16 17 0.74 6e+02 0.3 0.1 7 14 489 496 486 508 0.80 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF30-206 - 542 4.2e-09 36.0 74.2 17 17 0.0071 5.8 6.8 0.3 5 24 515 538 512 541 0.63 zinc-finger C2H2-type zinc_ribbon_15 PF17032.5 86 ZNF30-206 - 542 6e-09 36.5 61.0 1 9 0.4 3.3e+02 2.1 3.4 45 77 47 78 14 85 0.58 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF30-206 - 542 6e-09 36.5 61.0 2 9 0.012 9.5 7.0 0.1 38 80 95 137 86 141 0.80 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF30-206 - 542 6e-09 36.5 61.0 3 9 0.057 47 4.8 0.3 33 75 146 188 140 193 0.84 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF30-206 - 542 6e-09 36.5 61.0 4 9 0.00034 0.28 12.0 2.0 26 74 195 243 186 247 0.86 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF30-206 - 542 6e-09 36.5 61.0 5 9 0.0037 3 8.7 0.3 34 76 259 301 253 307 0.85 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF30-206 - 542 6e-09 36.5 61.0 6 9 0.0024 1.9 9.3 1.0 32 75 313 356 303 365 0.84 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF30-206 - 542 6e-09 36.5 61.0 7 9 0.00077 0.63 10.8 1.7 32 76 369 413 364 418 0.87 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF30-206 - 542 6e-09 36.5 61.0 8 9 0.0012 0.97 10.2 1.2 26 74 419 467 414 471 0.86 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF30-206 - 542 6e-09 36.5 61.0 9 9 0.0023 1.9 9.3 0.3 33 76 482 525 474 530 0.83 zinc-ribbon family zf-trcl PF13451.6 48 ZNF30-206 - 542 1.4e-07 31.3 69.6 1 16 0.028 23 5.0 0.2 32 41 65 74 58 80 0.72 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF30-206 - 542 1.4e-07 31.3 69.6 2 16 0.032 26 4.8 0.2 3 12 121 130 119 132 0.85 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF30-206 - 542 1.4e-07 31.3 69.6 3 16 0.37 3e+02 1.4 0.1 3 14 149 160 148 163 0.86 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF30-206 - 542 1.4e-07 31.3 69.6 4 16 0.081 66 3.5 0.1 3 14 177 188 175 199 0.83 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF30-206 - 542 1.4e-07 31.3 69.6 5 16 0.039 31 4.5 0.1 3 14 205 216 203 219 0.87 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF30-206 - 542 1.4e-07 31.3 69.6 6 16 0.011 8.9 6.3 0.1 3 15 233 245 231 249 0.88 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF30-206 - 542 1.4e-07 31.3 69.6 7 16 0.032 26 4.8 0.4 3 14 261 272 259 288 0.87 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF30-206 - 542 1.4e-07 31.3 69.6 8 16 0.097 79 3.3 0.2 3 14 289 300 287 301 0.87 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF30-206 - 542 1.4e-07 31.3 69.6 9 16 0.048 39 4.3 0.1 3 14 317 328 315 329 0.87 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF30-206 - 542 1.4e-07 31.3 69.6 10 16 0.013 11 6.0 0.1 3 15 345 357 343 361 0.90 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF30-206 - 542 1.4e-07 31.3 69.6 11 16 0.047 38 4.3 0.1 3 14 373 384 371 387 0.88 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF30-206 - 542 1.4e-07 31.3 69.6 12 16 0.05 41 4.2 0.2 3 14 401 412 399 413 0.89 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF30-206 - 542 1.4e-07 31.3 69.6 13 16 0.073 60 3.7 0.3 3 14 429 440 428 441 0.87 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF30-206 - 542 1.4e-07 31.3 69.6 14 16 0.067 55 3.8 0.1 3 15 457 469 455 473 0.88 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF30-206 - 542 1.4e-07 31.3 69.6 15 16 0.033 27 4.7 0.1 3 14 485 496 483 501 0.89 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF30-206 - 542 1.4e-07 31.3 69.6 16 16 0.0029 2.4 8.1 0.2 3 17 513 527 511 529 0.87 Probable zinc-ribbon domain # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF30-206.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF30-206.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF30-206.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF30-206.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF30-206.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:03:35 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZNF302-201 - 399 1.4e-53 177.0 52.9 1 8 9.4e-05 0.089 13.3 1.5 12 25 198 211 194 212 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF302-201 - 399 1.4e-53 177.0 52.9 2 8 1.2e-11 1.2e-08 35.0 0.9 2 26 216 240 215 240 0.97 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF302-201 - 399 1.4e-53 177.0 52.9 3 8 1.6e-11 1.5e-08 34.7 0.8 1 26 243 268 243 268 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF302-201 - 399 1.4e-53 177.0 52.9 4 8 1.3e-11 1.3e-08 34.9 0.6 1 25 271 295 271 296 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF302-201 - 399 1.4e-53 177.0 52.9 5 8 1e-09 9.6e-07 29.0 0.4 3 26 301 324 300 324 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF302-201 - 399 1.4e-53 177.0 52.9 6 8 4.6e-10 4.3e-07 30.1 1.7 2 24 328 350 327 350 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF302-201 - 399 1.4e-53 177.0 52.9 7 8 3.2e-08 3e-05 24.2 3.1 1 26 355 380 355 380 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF302-201 - 399 1.4e-53 177.0 52.9 8 8 0.0031 2.9 8.5 0.1 2 16 384 398 384 399 0.94 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZNF302-201 - 399 8e-33 111.1 54.7 1 7 1.9e-06 0.0018 18.6 0.2 1 23 201 223 201 223 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF302-201 - 399 8e-33 111.1 54.7 2 7 9.4e-08 8.9e-05 22.7 1.9 1 23 229 251 229 251 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF302-201 - 399 8e-33 111.1 54.7 3 7 2.1e-06 0.002 18.5 1.3 1 23 257 279 257 279 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF302-201 - 399 8e-33 111.1 54.7 4 7 1.3e-08 1.2e-05 25.4 0.3 1 23 285 307 285 307 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF302-201 - 399 8e-33 111.1 54.7 5 7 6.7e-08 6.3e-05 23.2 2.7 1 23 313 335 313 335 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF302-201 - 399 8e-33 111.1 54.7 6 7 1.2e-05 0.011 16.1 6.5 1 23 341 363 341 363 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF302-201 - 399 8e-33 111.1 54.7 7 7 5.6e-06 0.0052 17.2 1.1 1 23 369 391 369 391 0.98 Zinc finger, C2H2 type KRAB PF01352.27 42 ZNF302-201 - 399 7.1e-24 83.2 0.3 1 1 1.3e-26 1.2e-23 82.4 0.3 2 42 4 44 3 44 0.98 KRAB box zf-C2H2_4 PF13894.6 24 ZNF302-201 - 399 1.9e-20 71.8 54.2 1 7 1.1e-05 0.01 16.6 0.3 1 23 201 223 201 224 0.86 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF302-201 - 399 1.9e-20 71.8 54.2 2 7 1.5e-05 0.015 16.1 1.6 1 23 229 251 229 252 0.91 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF302-201 - 399 1.9e-20 71.8 54.2 3 7 0.00011 0.1 13.5 1.1 1 23 257 279 257 280 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF302-201 - 399 1.9e-20 71.8 54.2 4 7 1.3e-05 0.012 16.4 0.3 1 23 285 307 285 308 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF302-201 - 399 1.9e-20 71.8 54.2 5 7 2.2e-05 0.021 15.6 2.3 1 23 313 335 313 336 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF302-201 - 399 1.9e-20 71.8 54.2 6 7 0.0001 0.098 13.5 6.3 1 23 341 363 341 364 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF302-201 - 399 1.9e-20 71.8 54.2 7 7 0.00075 0.71 10.9 1.4 1 23 369 391 369 392 0.92 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF302-201 - 399 7.3e-10 38.6 58.1 1 8 0.00034 0.32 11.1 0.2 2 14 201 213 200 219 0.90 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF302-201 - 399 7.3e-10 38.6 58.1 2 8 5.7e-06 0.0054 16.7 2.7 2 25 229 252 229 254 0.95 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF302-201 - 399 7.3e-10 38.6 58.1 3 8 0.00017 0.16 12.0 2.5 2 24 257 279 257 282 0.95 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF302-201 - 399 7.3e-10 38.6 58.1 4 8 0.0023 2.2 8.4 0.2 2 24 285 307 285 310 0.85 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF302-201 - 399 7.3e-10 38.6 58.1 5 8 0.0014 1.3 9.1 2.5 1 24 312 335 312 338 0.92 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF302-201 - 399 7.3e-10 38.6 58.1 6 8 0.066 62 3.7 2.9 2 11 341 350 341 351 0.96 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF302-201 - 399 7.3e-10 38.6 58.1 7 8 6.5 6.2e+03 -2.6 0.1 20 26 355 361 354 362 0.82 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF302-201 - 399 7.3e-10 38.6 58.1 8 8 0.00018 0.17 11.9 1.7 2 14 369 381 368 391 0.90 C2H2-type zinc finger # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF302-201.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF302-201.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF302-201.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF302-201.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF302-201.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:03:36 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZNF302-202 - 443 3.8e-53 175.7 52.9 1 8 0.00011 0.1 13.1 1.5 12 25 242 255 238 256 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF302-202 - 443 3.8e-53 175.7 52.9 2 8 1.4e-11 1.3e-08 34.8 0.9 2 26 260 284 259 284 0.97 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF302-202 - 443 3.8e-53 175.7 52.9 3 8 1.8e-11 1.7e-08 34.5 0.8 1 26 287 312 287 312 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF302-202 - 443 3.8e-53 175.7 52.9 4 8 1.5e-11 1.4e-08 34.7 0.6 1 25 315 339 315 340 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF302-202 - 443 3.8e-53 175.7 52.9 5 8 1.2e-09 1.1e-06 28.8 0.4 3 26 345 368 344 368 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF302-202 - 443 3.8e-53 175.7 52.9 6 8 5.2e-10 4.9e-07 29.9 1.7 2 24 372 394 371 394 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF302-202 - 443 3.8e-53 175.7 52.9 7 8 3.6e-08 3.4e-05 24.1 3.1 1 26 399 424 399 424 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF302-202 - 443 3.8e-53 175.7 52.9 8 8 0.0035 3.3 8.3 0.1 2 16 428 442 428 443 0.94 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZNF302-202 - 443 1.9e-32 109.9 54.7 1 7 2.2e-06 0.0021 18.4 0.2 1 23 245 267 245 267 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF302-202 - 443 1.9e-32 109.9 54.7 2 7 1.1e-07 0.0001 22.6 1.9 1 23 273 295 273 295 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF302-202 - 443 1.9e-32 109.9 54.7 3 7 2.4e-06 0.0022 18.3 1.3 1 23 301 323 301 323 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF302-202 - 443 1.9e-32 109.9 54.7 4 7 1.5e-08 1.4e-05 25.3 0.3 1 23 329 351 329 351 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF302-202 - 443 1.9e-32 109.9 54.7 5 7 7.6e-08 7.2e-05 23.0 2.7 1 23 357 379 357 379 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF302-202 - 443 1.9e-32 109.9 54.7 6 7 1.4e-05 0.013 15.9 6.5 1 23 385 407 385 407 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF302-202 - 443 1.9e-32 109.9 54.7 7 7 6.3e-06 0.006 17.0 1.1 1 23 413 435 413 435 0.98 Zinc finger, C2H2 type KRAB PF01352.27 42 ZNF302-202 - 443 1.3e-23 82.4 0.3 1 1 2.3e-26 2.2e-23 81.6 0.3 2 42 48 88 47 88 0.99 KRAB box zf-C2H2_4 PF13894.6 24 ZNF302-202 - 443 4.2e-20 70.7 54.2 1 7 1.2e-05 0.011 16.4 0.3 1 23 245 267 245 268 0.86 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF302-202 - 443 4.2e-20 70.7 54.2 2 7 1.8e-05 0.017 15.9 1.6 1 23 273 295 273 296 0.91 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF302-202 - 443 4.2e-20 70.7 54.2 3 7 0.00012 0.12 13.3 1.1 1 23 301 323 301 324 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF302-202 - 443 4.2e-20 70.7 54.2 4 7 1.5e-05 0.014 16.2 0.3 1 23 329 351 329 352 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF302-202 - 443 4.2e-20 70.7 54.2 5 7 2.5e-05 0.024 15.5 2.3 1 23 357 379 357 380 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF302-202 - 443 4.2e-20 70.7 54.2 6 7 0.00012 0.11 13.4 6.3 1 23 385 407 385 408 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF302-202 - 443 4.2e-20 70.7 54.2 7 7 0.00086 0.81 10.7 1.4 1 23 413 435 413 436 0.92 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF302-202 - 443 1.8e-09 37.3 58.1 1 8 0.00038 0.36 10.9 0.2 2 14 245 257 244 263 0.90 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF302-202 - 443 1.8e-09 37.3 58.1 2 8 6.5e-06 0.0061 16.5 2.7 2 25 273 296 273 298 0.95 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF302-202 - 443 1.8e-09 37.3 58.1 3 8 0.00019 0.18 11.9 2.5 2 24 301 323 301 326 0.95 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF302-202 - 443 1.8e-09 37.3 58.1 4 8 0.0026 2.4 8.2 0.2 2 24 329 351 329 354 0.85 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF302-202 - 443 1.8e-09 37.3 58.1 5 8 0.0016 1.5 8.9 2.5 1 24 356 379 356 382 0.92 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF302-202 - 443 1.8e-09 37.3 58.1 6 8 0.074 70 3.6 2.9 2 11 385 394 385 395 0.96 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF302-202 - 443 1.8e-09 37.3 58.1 7 8 7.3 6.9e+03 -2.8 0.1 20 26 399 405 398 406 0.82 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF302-202 - 443 1.8e-09 37.3 58.1 8 8 0.0002 0.19 11.8 1.7 2 14 413 425 412 435 0.90 C2H2-type zinc finger # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF302-202.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF302-202.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF302-202.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF302-202.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF302-202.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:03:36 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZNF302-203 - 399 1.4e-53 177.0 52.9 1 8 9.4e-05 0.089 13.3 1.5 12 25 198 211 194 212 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF302-203 - 399 1.4e-53 177.0 52.9 2 8 1.2e-11 1.2e-08 35.0 0.9 2 26 216 240 215 240 0.97 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF302-203 - 399 1.4e-53 177.0 52.9 3 8 1.6e-11 1.5e-08 34.7 0.8 1 26 243 268 243 268 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF302-203 - 399 1.4e-53 177.0 52.9 4 8 1.3e-11 1.3e-08 34.9 0.6 1 25 271 295 271 296 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF302-203 - 399 1.4e-53 177.0 52.9 5 8 1e-09 9.6e-07 29.0 0.4 3 26 301 324 300 324 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF302-203 - 399 1.4e-53 177.0 52.9 6 8 4.6e-10 4.3e-07 30.1 1.7 2 24 328 350 327 350 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF302-203 - 399 1.4e-53 177.0 52.9 7 8 3.2e-08 3e-05 24.2 3.1 1 26 355 380 355 380 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF302-203 - 399 1.4e-53 177.0 52.9 8 8 0.0031 2.9 8.5 0.1 2 16 384 398 384 399 0.94 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZNF302-203 - 399 8e-33 111.1 54.7 1 7 1.9e-06 0.0018 18.6 0.2 1 23 201 223 201 223 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF302-203 - 399 8e-33 111.1 54.7 2 7 9.4e-08 8.9e-05 22.7 1.9 1 23 229 251 229 251 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF302-203 - 399 8e-33 111.1 54.7 3 7 2.1e-06 0.002 18.5 1.3 1 23 257 279 257 279 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF302-203 - 399 8e-33 111.1 54.7 4 7 1.3e-08 1.2e-05 25.4 0.3 1 23 285 307 285 307 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF302-203 - 399 8e-33 111.1 54.7 5 7 6.7e-08 6.3e-05 23.2 2.7 1 23 313 335 313 335 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF302-203 - 399 8e-33 111.1 54.7 6 7 1.2e-05 0.011 16.1 6.5 1 23 341 363 341 363 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF302-203 - 399 8e-33 111.1 54.7 7 7 5.6e-06 0.0052 17.2 1.1 1 23 369 391 369 391 0.98 Zinc finger, C2H2 type KRAB PF01352.27 42 ZNF302-203 - 399 7.1e-24 83.2 0.3 1 1 1.3e-26 1.2e-23 82.4 0.3 2 42 4 44 3 44 0.98 KRAB box zf-C2H2_4 PF13894.6 24 ZNF302-203 - 399 1.9e-20 71.8 54.2 1 7 1.1e-05 0.01 16.6 0.3 1 23 201 223 201 224 0.86 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF302-203 - 399 1.9e-20 71.8 54.2 2 7 1.5e-05 0.015 16.1 1.6 1 23 229 251 229 252 0.91 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF302-203 - 399 1.9e-20 71.8 54.2 3 7 0.00011 0.1 13.5 1.1 1 23 257 279 257 280 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF302-203 - 399 1.9e-20 71.8 54.2 4 7 1.3e-05 0.012 16.4 0.3 1 23 285 307 285 308 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF302-203 - 399 1.9e-20 71.8 54.2 5 7 2.2e-05 0.021 15.6 2.3 1 23 313 335 313 336 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF302-203 - 399 1.9e-20 71.8 54.2 6 7 0.0001 0.098 13.5 6.3 1 23 341 363 341 364 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF302-203 - 399 1.9e-20 71.8 54.2 7 7 0.00075 0.71 10.9 1.4 1 23 369 391 369 392 0.92 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF302-203 - 399 7.3e-10 38.6 58.1 1 8 0.00034 0.32 11.1 0.2 2 14 201 213 200 219 0.90 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF302-203 - 399 7.3e-10 38.6 58.1 2 8 5.7e-06 0.0054 16.7 2.7 2 25 229 252 229 254 0.95 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF302-203 - 399 7.3e-10 38.6 58.1 3 8 0.00017 0.16 12.0 2.5 2 24 257 279 257 282 0.95 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF302-203 - 399 7.3e-10 38.6 58.1 4 8 0.0023 2.2 8.4 0.2 2 24 285 307 285 310 0.85 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF302-203 - 399 7.3e-10 38.6 58.1 5 8 0.0014 1.3 9.1 2.5 1 24 312 335 312 338 0.92 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF302-203 - 399 7.3e-10 38.6 58.1 6 8 0.066 62 3.7 2.9 2 11 341 350 341 351 0.96 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF302-203 - 399 7.3e-10 38.6 58.1 7 8 6.5 6.2e+03 -2.6 0.1 20 26 355 361 354 362 0.82 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF302-203 - 399 7.3e-10 38.6 58.1 8 8 0.00018 0.17 11.9 1.7 2 14 369 381 368 391 0.90 C2H2-type zinc finger # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF302-203.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF302-203.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF302-203.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF302-203.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF302-203.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:03:36 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF302-204.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF302-204.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF302-204.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF302-204.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF302-204.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:03:37 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF302-205.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF302-205.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF302-205.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF302-205.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF302-205.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:03:37 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZNF302-206 - 399 1.4e-53 177.0 52.9 1 8 9.4e-05 0.089 13.3 1.5 12 25 198 211 194 212 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF302-206 - 399 1.4e-53 177.0 52.9 2 8 1.2e-11 1.2e-08 35.0 0.9 2 26 216 240 215 240 0.97 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF302-206 - 399 1.4e-53 177.0 52.9 3 8 1.6e-11 1.5e-08 34.7 0.8 1 26 243 268 243 268 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF302-206 - 399 1.4e-53 177.0 52.9 4 8 1.3e-11 1.3e-08 34.9 0.6 1 25 271 295 271 296 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF302-206 - 399 1.4e-53 177.0 52.9 5 8 1e-09 9.6e-07 29.0 0.4 3 26 301 324 300 324 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF302-206 - 399 1.4e-53 177.0 52.9 6 8 4.6e-10 4.3e-07 30.1 1.7 2 24 328 350 327 350 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF302-206 - 399 1.4e-53 177.0 52.9 7 8 3.2e-08 3e-05 24.2 3.1 1 26 355 380 355 380 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF302-206 - 399 1.4e-53 177.0 52.9 8 8 0.0031 2.9 8.5 0.1 2 16 384 398 384 399 0.94 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZNF302-206 - 399 8e-33 111.1 54.7 1 7 1.9e-06 0.0018 18.6 0.2 1 23 201 223 201 223 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF302-206 - 399 8e-33 111.1 54.7 2 7 9.4e-08 8.9e-05 22.7 1.9 1 23 229 251 229 251 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF302-206 - 399 8e-33 111.1 54.7 3 7 2.1e-06 0.002 18.5 1.3 1 23 257 279 257 279 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF302-206 - 399 8e-33 111.1 54.7 4 7 1.3e-08 1.2e-05 25.4 0.3 1 23 285 307 285 307 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF302-206 - 399 8e-33 111.1 54.7 5 7 6.7e-08 6.3e-05 23.2 2.7 1 23 313 335 313 335 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF302-206 - 399 8e-33 111.1 54.7 6 7 1.2e-05 0.011 16.1 6.5 1 23 341 363 341 363 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF302-206 - 399 8e-33 111.1 54.7 7 7 5.6e-06 0.0052 17.2 1.1 1 23 369 391 369 391 0.98 Zinc finger, C2H2 type KRAB PF01352.27 42 ZNF302-206 - 399 7.1e-24 83.2 0.3 1 1 1.3e-26 1.2e-23 82.4 0.3 2 42 4 44 3 44 0.98 KRAB box zf-C2H2_4 PF13894.6 24 ZNF302-206 - 399 1.9e-20 71.8 54.2 1 7 1.1e-05 0.01 16.6 0.3 1 23 201 223 201 224 0.86 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF302-206 - 399 1.9e-20 71.8 54.2 2 7 1.5e-05 0.015 16.1 1.6 1 23 229 251 229 252 0.91 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF302-206 - 399 1.9e-20 71.8 54.2 3 7 0.00011 0.1 13.5 1.1 1 23 257 279 257 280 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF302-206 - 399 1.9e-20 71.8 54.2 4 7 1.3e-05 0.012 16.4 0.3 1 23 285 307 285 308 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF302-206 - 399 1.9e-20 71.8 54.2 5 7 2.2e-05 0.021 15.6 2.3 1 23 313 335 313 336 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF302-206 - 399 1.9e-20 71.8 54.2 6 7 0.0001 0.098 13.5 6.3 1 23 341 363 341 364 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF302-206 - 399 1.9e-20 71.8 54.2 7 7 0.00075 0.71 10.9 1.4 1 23 369 391 369 392 0.92 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF302-206 - 399 7.3e-10 38.6 58.1 1 8 0.00034 0.32 11.1 0.2 2 14 201 213 200 219 0.90 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF302-206 - 399 7.3e-10 38.6 58.1 2 8 5.7e-06 0.0054 16.7 2.7 2 25 229 252 229 254 0.95 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF302-206 - 399 7.3e-10 38.6 58.1 3 8 0.00017 0.16 12.0 2.5 2 24 257 279 257 282 0.95 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF302-206 - 399 7.3e-10 38.6 58.1 4 8 0.0023 2.2 8.4 0.2 2 24 285 307 285 310 0.85 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF302-206 - 399 7.3e-10 38.6 58.1 5 8 0.0014 1.3 9.1 2.5 1 24 312 335 312 338 0.92 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF302-206 - 399 7.3e-10 38.6 58.1 6 8 0.066 62 3.7 2.9 2 11 341 350 341 351 0.96 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF302-206 - 399 7.3e-10 38.6 58.1 7 8 6.5 6.2e+03 -2.6 0.1 20 26 355 361 354 362 0.82 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF302-206 - 399 7.3e-10 38.6 58.1 8 8 0.00018 0.17 11.9 1.7 2 14 369 381 368 391 0.90 C2H2-type zinc finger # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF302-206.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF302-206.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF302-206.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF302-206.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF302-206.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:03:38 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZNF302-207 - 301 9.1e-55 180.8 52.9 1 8 7e-05 0.063 13.7 1.5 12 25 100 113 96 114 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF302-207 - 301 9.1e-55 180.8 52.9 2 8 9.1e-12 8.1e-09 35.5 0.9 2 26 118 142 117 142 0.97 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF302-207 - 301 9.1e-55 180.8 52.9 3 8 1.1e-11 1e-08 35.2 0.8 1 26 145 170 145 170 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF302-207 - 301 9.1e-55 180.8 52.9 4 8 9.8e-12 8.8e-09 35.4 0.6 1 25 173 197 173 198 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF302-207 - 301 9.1e-55 180.8 52.9 5 8 7.5e-10 6.7e-07 29.5 0.4 3 26 203 226 202 226 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF302-207 - 301 9.1e-55 180.8 52.9 6 8 3.4e-10 3e-07 30.6 1.7 2 24 230 252 229 252 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF302-207 - 301 9.1e-55 180.8 52.9 7 8 2.3e-08 2.1e-05 24.7 3.1 1 26 257 282 257 282 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF302-207 - 301 9.1e-55 180.8 52.9 8 8 0.0023 2.1 8.9 0.1 2 16 286 300 286 301 0.94 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZNF302-207 - 301 6.4e-34 114.5 54.7 1 7 1.4e-06 0.0013 19.1 0.2 1 23 103 125 103 125 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF302-207 - 301 6.4e-34 114.5 54.7 2 7 6.9e-08 6.2e-05 23.2 1.9 1 23 131 153 131 153 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF302-207 - 301 6.4e-34 114.5 54.7 3 7 1.5e-06 0.0014 19.0 1.3 1 23 159 181 159 181 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF302-207 - 301 6.4e-34 114.5 54.7 4 7 9.7e-09 8.7e-06 25.9 0.3 1 23 187 209 187 209 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF302-207 - 301 6.4e-34 114.5 54.7 5 7 4.9e-08 4.4e-05 23.7 2.7 1 23 215 237 215 237 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF302-207 - 301 6.4e-34 114.5 54.7 6 7 8.8e-06 0.0079 16.6 6.5 1 23 243 265 243 265 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF302-207 - 301 6.4e-34 114.5 54.7 7 7 4.1e-06 0.0037 17.6 1.1 1 23 271 293 271 293 0.98 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZNF302-207 - 301 3.6e-20 70.9 58.4 1 7 7.8e-06 0.007 17.1 0.3 1 23 103 125 103 126 0.86 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF302-207 - 301 3.6e-20 70.9 58.4 2 7 1.1e-05 0.01 16.6 1.6 1 23 131 153 131 154 0.91 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF302-207 - 301 3.6e-20 70.9 58.4 3 7 8e-05 0.072 14.0 1.1 1 23 159 181 159 182 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF302-207 - 301 3.6e-20 70.9 58.4 4 7 9.4e-06 0.0085 16.9 0.3 1 23 187 209 187 210 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF302-207 - 301 3.6e-20 70.9 58.4 5 7 1.6e-05 0.015 16.1 2.3 1 23 215 237 215 238 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF302-207 - 301 3.6e-20 70.9 58.4 6 7 7.6e-05 0.068 14.0 6.3 1 23 243 265 243 266 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF302-207 - 301 3.6e-20 70.9 58.4 7 7 0.00055 0.5 11.4 1.4 1 23 271 293 271 294 0.92 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF302-207 - 301 2.5e-11 43.3 57.0 1 8 0.00023 0.21 11.6 0.1 2 14 103 115 102 122 0.90 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF302-207 - 301 2.5e-11 43.3 57.0 2 8 4.2e-06 0.0038 17.2 2.7 2 25 131 154 131 156 0.95 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF302-207 - 301 2.5e-11 43.3 57.0 3 8 0.00012 0.11 12.5 2.5 2 24 159 181 159 184 0.95 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF302-207 - 301 2.5e-11 43.3 57.0 4 8 0.0017 1.5 8.9 0.2 2 24 187 209 187 212 0.85 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF302-207 - 301 2.5e-11 43.3 57.0 5 8 0.001 0.93 9.6 2.5 1 24 214 237 214 240 0.92 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF302-207 - 301 2.5e-11 43.3 57.0 6 8 0.051 45 4.2 2.9 2 11 243 252 243 253 0.96 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF302-207 - 301 2.5e-11 43.3 57.0 7 8 5 4.5e+03 -2.2 0.1 20 26 257 263 256 264 0.82 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF302-207 - 301 2.5e-11 43.3 57.0 8 8 0.00014 0.12 12.4 1.7 2 14 271 283 270 293 0.90 C2H2-type zinc finger zf-C2H2_jaz PF12171.8 27 ZNF302-207 - 301 3.6e-07 30.3 35.7 1 7 0.0086 7.7 6.9 0.0 2 22 103 123 102 123 0.91 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF302-207 - 301 3.6e-07 30.3 35.7 2 7 0.00038 0.34 11.2 0.2 2 24 131 153 130 154 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF302-207 - 301 3.6e-07 30.3 35.7 3 7 5.2e-05 0.047 14.0 0.4 2 24 159 181 158 181 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF302-207 - 301 3.6e-07 30.3 35.7 4 7 0.0011 0.96 9.8 0.0 2 22 187 207 186 207 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF302-207 - 301 3.6e-07 30.3 35.7 5 7 0.001 0.93 9.9 2.0 2 24 215 237 214 237 0.95 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF302-207 - 301 3.6e-07 30.3 35.7 6 7 3.8 3.4e+03 -1.5 2.3 2 11 243 252 242 263 0.78 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF302-207 - 301 3.6e-07 30.3 35.7 7 7 4.3 3.9e+03 -1.7 1.5 2 21 271 290 270 291 0.78 Zinc-finger double-stranded RNA-binding Zn-ribbon_8 PF09723.10 40 ZNF302-207 - 301 4.9e-07 29.8 33.1 1 7 0.018 16 5.7 0.1 6 15 103 112 101 121 0.85 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF302-207 - 301 4.9e-07 29.8 33.1 2 7 5.9e-05 0.053 13.6 4.1 6 34 131 166 130 170 0.86 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF302-207 - 301 4.9e-07 29.8 33.1 3 7 7.2e-05 0.064 13.4 2.5 6 39 159 199 158 200 0.91 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF302-207 - 301 4.9e-07 29.8 33.1 4 7 0.0027 2.5 8.3 0.2 6 18 187 199 185 209 0.86 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF302-207 - 301 4.9e-07 29.8 33.1 5 7 0.00088 0.79 9.9 4.9 6 34 215 250 213 253 0.90 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF302-207 - 301 4.9e-07 29.8 33.1 6 7 0.074 67 3.7 7.9 6 32 243 276 242 278 0.80 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF302-207 - 301 4.9e-07 29.8 33.1 7 7 0.016 14 5.9 0.4 6 17 271 286 269 298 0.72 Zinc ribbon domain XPA_N PF01286.18 32 ZNF302-207 - 301 8.2e-07 29.0 24.9 1 7 0.0028 2.5 8.2 0.0 3 13 104 114 103 124 0.75 XPA protein N-terminal XPA_N PF01286.18 32 ZNF302-207 - 301 8.2e-07 29.0 24.9 2 7 0.0043 3.9 7.6 0.1 3 12 132 141 130 147 0.89 XPA protein N-terminal XPA_N PF01286.18 32 ZNF302-207 - 301 8.2e-07 29.0 24.9 3 7 0.0035 3.1 7.9 0.1 3 12 160 169 158 177 0.86 XPA protein N-terminal XPA_N PF01286.18 32 ZNF302-207 - 301 8.2e-07 29.0 24.9 4 7 0.027 24 5.1 0.0 3 12 188 197 186 205 0.81 XPA protein N-terminal XPA_N PF01286.18 32 ZNF302-207 - 301 8.2e-07 29.0 24.9 5 7 0.075 67 3.7 0.1 3 14 216 227 214 230 0.88 XPA protein N-terminal XPA_N PF01286.18 32 ZNF302-207 - 301 8.2e-07 29.0 24.9 6 7 0.0055 5 7.3 2.4 3 14 244 255 242 261 0.84 XPA protein N-terminal XPA_N PF01286.18 32 ZNF302-207 - 301 8.2e-07 29.0 24.9 7 7 0.62 5.6e+02 0.7 0.3 3 16 272 286 270 289 0.70 XPA protein N-terminal # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF302-207.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF302-207.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF302-207.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF302-207.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF302-207.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:03:38 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- KRAB PF01352.27 42 ZNF302-208 - 132 1.4e-24 85.5 0.3 1 1 1.1e-28 2e-24 84.9 0.3 2 42 4 44 3 44 0.98 KRAB box # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF302-208.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF302-208.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF302-208.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF302-208.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF302-208.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:03:38 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- KRAB PF01352.27 42 ZNF302-209 - 132 1.4e-24 85.5 0.3 1 1 1.1e-28 2e-24 84.9 0.3 2 42 4 44 3 44 0.98 KRAB box # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF302-209.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF302-209.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF302-209.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF302-209.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF302-209.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:03:39 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZNF302-210 - 367 6.4e-54 178.1 52.9 1 8 8.1e-05 0.08 13.4 1.5 12 25 166 179 162 180 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF302-210 - 367 6.4e-54 178.1 52.9 2 8 1.1e-11 1e-08 35.2 0.9 2 26 184 208 183 208 0.97 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF302-210 - 367 6.4e-54 178.1 52.9 3 8 1.3e-11 1.3e-08 34.8 0.8 1 26 211 236 211 236 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF302-210 - 367 6.4e-54 178.1 52.9 4 8 1.1e-11 1.1e-08 35.1 0.6 1 25 239 263 239 264 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF302-210 - 367 6.4e-54 178.1 52.9 5 8 8.7e-10 8.6e-07 29.1 0.4 3 26 269 292 268 292 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF302-210 - 367 6.4e-54 178.1 52.9 6 8 3.9e-10 3.9e-07 30.2 1.7 2 24 296 318 295 318 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF302-210 - 367 6.4e-54 178.1 52.9 7 8 2.7e-08 2.7e-05 24.4 3.1 1 26 323 348 323 348 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF302-210 - 367 6.4e-54 178.1 52.9 8 8 0.0026 2.6 8.6 0.1 2 16 352 366 352 367 0.94 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZNF302-210 - 367 3.9e-33 112.1 54.7 1 7 1.7e-06 0.0017 18.7 0.2 1 23 169 191 169 191 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF302-210 - 367 3.9e-33 112.1 54.7 2 7 8e-08 8e-05 22.9 1.9 1 23 197 219 197 219 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF302-210 - 367 3.9e-33 112.1 54.7 3 7 1.8e-06 0.0018 18.7 1.3 1 23 225 247 225 247 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF302-210 - 367 3.9e-33 112.1 54.7 4 7 1.1e-08 1.1e-05 25.6 0.3 1 23 253 275 253 275 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF302-210 - 367 3.9e-33 112.1 54.7 5 7 5.7e-08 5.7e-05 23.3 2.7 1 23 281 303 281 303 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF302-210 - 367 3.9e-33 112.1 54.7 6 7 1e-05 0.01 16.3 6.5 1 23 309 331 309 331 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF302-210 - 367 3.9e-33 112.1 54.7 7 7 4.7e-06 0.0047 17.3 1.1 1 23 337 359 337 359 0.98 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZNF302-210 - 367 9.1e-21 72.8 54.2 1 7 9.1e-06 0.0091 16.8 0.3 1 23 169 191 169 192 0.86 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF302-210 - 367 9.1e-21 72.8 54.2 2 7 1.3e-05 0.013 16.3 1.6 1 23 197 219 197 220 0.91 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF302-210 - 367 9.1e-21 72.8 54.2 3 7 9.3e-05 0.092 13.6 1.1 1 23 225 247 225 248 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF302-210 - 367 9.1e-21 72.8 54.2 4 7 1.1e-05 0.011 16.5 0.3 1 23 253 275 253 276 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF302-210 - 367 9.1e-21 72.8 54.2 5 7 1.9e-05 0.019 15.8 2.3 1 23 281 303 281 304 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF302-210 - 367 9.1e-21 72.8 54.2 6 7 8.9e-05 0.088 13.7 6.3 1 23 309 331 309 332 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF302-210 - 367 9.1e-21 72.8 54.2 7 7 0.00064 0.64 11.0 1.4 1 23 337 359 337 360 0.92 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF302-210 - 367 3.5e-10 39.6 58.1 1 8 0.00029 0.29 11.2 0.2 2 14 169 181 168 187 0.90 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF302-210 - 367 3.5e-10 39.6 58.1 2 8 4.9e-06 0.0048 16.9 2.7 2 25 197 220 197 222 0.95 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF302-210 - 367 3.5e-10 39.6 58.1 3 8 0.00014 0.14 12.2 2.5 2 24 225 247 225 250 0.95 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF302-210 - 367 3.5e-10 39.6 58.1 4 8 0.0019 1.9 8.6 0.2 2 24 253 275 253 278 0.85 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF302-210 - 367 3.5e-10 39.6 58.1 5 8 0.0012 1.2 9.2 2.5 1 24 280 303 280 306 0.92 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF302-210 - 367 3.5e-10 39.6 58.1 6 8 0.057 57 3.9 2.9 2 11 309 318 309 319 0.96 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF302-210 - 367 3.5e-10 39.6 58.1 7 8 5.6 5.6e+03 -2.5 0.1 20 26 323 329 322 330 0.82 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF302-210 - 367 3.5e-10 39.6 58.1 8 8 0.00015 0.15 12.1 1.7 2 14 337 349 336 359 0.90 C2H2-type zinc finger # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF302-210.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF302-210.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF302-210.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF302-210.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF302-210.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:03:39 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF302-211.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF302-211.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF302-211.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF302-211.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF302-211.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:03:39 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- KRAB PF01352.27 42 ZNF302-212 - 61 2.6e-25 87.8 0.3 1 1 1.7e-29 3e-25 87.6 0.3 1 42 3 44 3 44 0.98 KRAB box # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF302-212.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF302-212.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF302-212.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF302-212.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF302-212.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:03:40 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF302-213.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF302-213.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF302-213.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF302-213.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF302-213.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:03:40 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZNF302-214 - 400 1.5e-53 177.0 52.9 1 8 9.4e-05 0.089 13.3 1.5 12 25 199 212 195 213 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF302-214 - 400 1.5e-53 177.0 52.9 2 8 1.2e-11 1.2e-08 35.0 0.9 2 26 217 241 216 241 0.97 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF302-214 - 400 1.5e-53 177.0 52.9 3 8 1.6e-11 1.5e-08 34.7 0.8 1 26 244 269 244 269 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF302-214 - 400 1.5e-53 177.0 52.9 4 8 1.3e-11 1.3e-08 34.9 0.6 1 25 272 296 272 297 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF302-214 - 400 1.5e-53 177.0 52.9 5 8 1e-09 9.6e-07 29.0 0.4 3 26 302 325 301 325 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF302-214 - 400 1.5e-53 177.0 52.9 6 8 4.6e-10 4.3e-07 30.1 1.7 2 24 329 351 328 351 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF302-214 - 400 1.5e-53 177.0 52.9 7 8 3.2e-08 3e-05 24.2 3.1 1 26 356 381 356 381 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF302-214 - 400 1.5e-53 177.0 52.9 8 8 0.0031 2.9 8.5 0.1 2 16 385 399 385 400 0.94 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZNF302-214 - 400 8.2e-33 111.0 54.7 1 7 2e-06 0.0018 18.6 0.2 1 23 202 224 202 224 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF302-214 - 400 8.2e-33 111.0 54.7 2 7 9.4e-08 8.9e-05 22.7 1.9 1 23 230 252 230 252 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF302-214 - 400 8.2e-33 111.0 54.7 3 7 2.1e-06 0.002 18.5 1.3 1 23 258 280 258 280 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF302-214 - 400 8.2e-33 111.0 54.7 4 7 1.3e-08 1.2e-05 25.4 0.3 1 23 286 308 286 308 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF302-214 - 400 8.2e-33 111.0 54.7 5 7 6.7e-08 6.3e-05 23.2 2.7 1 23 314 336 314 336 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF302-214 - 400 8.2e-33 111.0 54.7 6 7 1.2e-05 0.011 16.1 6.5 1 23 342 364 342 364 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF302-214 - 400 8.2e-33 111.0 54.7 7 7 5.6e-06 0.0053 17.2 1.1 1 23 370 392 370 392 0.98 Zinc finger, C2H2 type KRAB PF01352.27 42 ZNF302-214 - 400 7.1e-24 83.2 0.3 1 1 1.3e-26 1.2e-23 82.4 0.3 2 42 4 44 3 44 0.98 KRAB box zf-C2H2_4 PF13894.6 24 ZNF302-214 - 400 1.9e-20 71.8 54.2 1 7 1.1e-05 0.01 16.6 0.3 1 23 202 224 202 225 0.86 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF302-214 - 400 1.9e-20 71.8 54.2 2 7 1.6e-05 0.015 16.1 1.6 1 23 230 252 230 253 0.91 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF302-214 - 400 1.9e-20 71.8 54.2 3 7 0.00011 0.1 13.5 1.1 1 23 258 280 258 281 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF302-214 - 400 1.9e-20 71.8 54.2 4 7 1.3e-05 0.012 16.4 0.3 1 23 286 308 286 309 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF302-214 - 400 1.9e-20 71.8 54.2 5 7 2.2e-05 0.021 15.6 2.3 1 23 314 336 314 337 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF302-214 - 400 1.9e-20 71.8 54.2 6 7 0.0001 0.099 13.5 6.3 1 23 342 364 342 365 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF302-214 - 400 1.9e-20 71.8 54.2 7 7 0.00076 0.71 10.9 1.4 1 23 370 392 370 393 0.92 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF302-214 - 400 7.5e-10 38.6 58.1 1 8 0.00034 0.32 11.1 0.2 2 14 202 214 201 220 0.90 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF302-214 - 400 7.5e-10 38.6 58.1 2 8 5.7e-06 0.0054 16.7 2.7 2 25 230 253 230 255 0.95 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF302-214 - 400 7.5e-10 38.6 58.1 3 8 0.00017 0.16 12.0 2.5 2 24 258 280 258 283 0.95 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF302-214 - 400 7.5e-10 38.6 58.1 4 8 0.0023 2.2 8.4 0.2 2 24 286 308 286 311 0.85 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF302-214 - 400 7.5e-10 38.6 58.1 5 8 0.0014 1.3 9.1 2.5 1 24 313 336 313 339 0.92 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF302-214 - 400 7.5e-10 38.6 58.1 6 8 0.066 63 3.7 2.9 2 11 342 351 342 352 0.96 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF302-214 - 400 7.5e-10 38.6 58.1 7 8 6.5 6.2e+03 -2.6 0.1 20 26 356 362 355 363 0.82 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF302-214 - 400 7.5e-10 38.6 58.1 8 8 0.00018 0.17 11.9 1.7 2 14 370 382 369 392 0.90 C2H2-type zinc finger # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF302-214.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF302-214.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF302-214.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF302-214.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF302-214.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:03:40 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZNF302-215 - 301 9.1e-55 180.8 52.9 1 8 7e-05 0.063 13.7 1.5 12 25 100 113 96 114 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF302-215 - 301 9.1e-55 180.8 52.9 2 8 9.1e-12 8.1e-09 35.5 0.9 2 26 118 142 117 142 0.97 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF302-215 - 301 9.1e-55 180.8 52.9 3 8 1.1e-11 1e-08 35.2 0.8 1 26 145 170 145 170 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF302-215 - 301 9.1e-55 180.8 52.9 4 8 9.8e-12 8.8e-09 35.4 0.6 1 25 173 197 173 198 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF302-215 - 301 9.1e-55 180.8 52.9 5 8 7.5e-10 6.7e-07 29.5 0.4 3 26 203 226 202 226 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF302-215 - 301 9.1e-55 180.8 52.9 6 8 3.4e-10 3e-07 30.6 1.7 2 24 230 252 229 252 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF302-215 - 301 9.1e-55 180.8 52.9 7 8 2.3e-08 2.1e-05 24.7 3.1 1 26 257 282 257 282 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF302-215 - 301 9.1e-55 180.8 52.9 8 8 0.0023 2.1 8.9 0.1 2 16 286 300 286 301 0.94 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZNF302-215 - 301 6.4e-34 114.5 54.7 1 7 1.4e-06 0.0013 19.1 0.2 1 23 103 125 103 125 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF302-215 - 301 6.4e-34 114.5 54.7 2 7 6.9e-08 6.2e-05 23.2 1.9 1 23 131 153 131 153 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF302-215 - 301 6.4e-34 114.5 54.7 3 7 1.5e-06 0.0014 19.0 1.3 1 23 159 181 159 181 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF302-215 - 301 6.4e-34 114.5 54.7 4 7 9.7e-09 8.7e-06 25.9 0.3 1 23 187 209 187 209 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF302-215 - 301 6.4e-34 114.5 54.7 5 7 4.9e-08 4.4e-05 23.7 2.7 1 23 215 237 215 237 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF302-215 - 301 6.4e-34 114.5 54.7 6 7 8.8e-06 0.0079 16.6 6.5 1 23 243 265 243 265 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF302-215 - 301 6.4e-34 114.5 54.7 7 7 4.1e-06 0.0037 17.6 1.1 1 23 271 293 271 293 0.98 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZNF302-215 - 301 3.6e-20 70.9 58.4 1 7 7.8e-06 0.007 17.1 0.3 1 23 103 125 103 126 0.86 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF302-215 - 301 3.6e-20 70.9 58.4 2 7 1.1e-05 0.01 16.6 1.6 1 23 131 153 131 154 0.91 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF302-215 - 301 3.6e-20 70.9 58.4 3 7 8e-05 0.072 14.0 1.1 1 23 159 181 159 182 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF302-215 - 301 3.6e-20 70.9 58.4 4 7 9.4e-06 0.0085 16.9 0.3 1 23 187 209 187 210 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF302-215 - 301 3.6e-20 70.9 58.4 5 7 1.6e-05 0.015 16.1 2.3 1 23 215 237 215 238 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF302-215 - 301 3.6e-20 70.9 58.4 6 7 7.6e-05 0.068 14.0 6.3 1 23 243 265 243 266 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF302-215 - 301 3.6e-20 70.9 58.4 7 7 0.00055 0.5 11.4 1.4 1 23 271 293 271 294 0.92 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF302-215 - 301 2.5e-11 43.3 57.0 1 8 0.00023 0.21 11.6 0.1 2 14 103 115 102 122 0.90 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF302-215 - 301 2.5e-11 43.3 57.0 2 8 4.2e-06 0.0038 17.2 2.7 2 25 131 154 131 156 0.95 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF302-215 - 301 2.5e-11 43.3 57.0 3 8 0.00012 0.11 12.5 2.5 2 24 159 181 159 184 0.95 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF302-215 - 301 2.5e-11 43.3 57.0 4 8 0.0017 1.5 8.9 0.2 2 24 187 209 187 212 0.85 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF302-215 - 301 2.5e-11 43.3 57.0 5 8 0.001 0.93 9.6 2.5 1 24 214 237 214 240 0.92 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF302-215 - 301 2.5e-11 43.3 57.0 6 8 0.051 45 4.2 2.9 2 11 243 252 243 253 0.96 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF302-215 - 301 2.5e-11 43.3 57.0 7 8 5 4.5e+03 -2.2 0.1 20 26 257 263 256 264 0.82 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF302-215 - 301 2.5e-11 43.3 57.0 8 8 0.00014 0.12 12.4 1.7 2 14 271 283 270 293 0.90 C2H2-type zinc finger zf-C2H2_jaz PF12171.8 27 ZNF302-215 - 301 3.6e-07 30.3 35.7 1 7 0.0086 7.7 6.9 0.0 2 22 103 123 102 123 0.91 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF302-215 - 301 3.6e-07 30.3 35.7 2 7 0.00038 0.34 11.2 0.2 2 24 131 153 130 154 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF302-215 - 301 3.6e-07 30.3 35.7 3 7 5.2e-05 0.047 14.0 0.4 2 24 159 181 158 181 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF302-215 - 301 3.6e-07 30.3 35.7 4 7 0.0011 0.96 9.8 0.0 2 22 187 207 186 207 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF302-215 - 301 3.6e-07 30.3 35.7 5 7 0.001 0.93 9.9 2.0 2 24 215 237 214 237 0.95 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF302-215 - 301 3.6e-07 30.3 35.7 6 7 3.8 3.4e+03 -1.5 2.3 2 11 243 252 242 263 0.78 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF302-215 - 301 3.6e-07 30.3 35.7 7 7 4.3 3.9e+03 -1.7 1.5 2 21 271 290 270 291 0.78 Zinc-finger double-stranded RNA-binding Zn-ribbon_8 PF09723.10 40 ZNF302-215 - 301 4.9e-07 29.8 33.1 1 7 0.018 16 5.7 0.1 6 15 103 112 101 121 0.85 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF302-215 - 301 4.9e-07 29.8 33.1 2 7 5.9e-05 0.053 13.6 4.1 6 34 131 166 130 170 0.86 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF302-215 - 301 4.9e-07 29.8 33.1 3 7 7.2e-05 0.064 13.4 2.5 6 39 159 199 158 200 0.91 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF302-215 - 301 4.9e-07 29.8 33.1 4 7 0.0027 2.5 8.3 0.2 6 18 187 199 185 209 0.86 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF302-215 - 301 4.9e-07 29.8 33.1 5 7 0.00088 0.79 9.9 4.9 6 34 215 250 213 253 0.90 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF302-215 - 301 4.9e-07 29.8 33.1 6 7 0.074 67 3.7 7.9 6 32 243 276 242 278 0.80 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF302-215 - 301 4.9e-07 29.8 33.1 7 7 0.016 14 5.9 0.4 6 17 271 286 269 298 0.72 Zinc ribbon domain XPA_N PF01286.18 32 ZNF302-215 - 301 8.2e-07 29.0 24.9 1 7 0.0028 2.5 8.2 0.0 3 13 104 114 103 124 0.75 XPA protein N-terminal XPA_N PF01286.18 32 ZNF302-215 - 301 8.2e-07 29.0 24.9 2 7 0.0043 3.9 7.6 0.1 3 12 132 141 130 147 0.89 XPA protein N-terminal XPA_N PF01286.18 32 ZNF302-215 - 301 8.2e-07 29.0 24.9 3 7 0.0035 3.1 7.9 0.1 3 12 160 169 158 177 0.86 XPA protein N-terminal XPA_N PF01286.18 32 ZNF302-215 - 301 8.2e-07 29.0 24.9 4 7 0.027 24 5.1 0.0 3 12 188 197 186 205 0.81 XPA protein N-terminal XPA_N PF01286.18 32 ZNF302-215 - 301 8.2e-07 29.0 24.9 5 7 0.075 67 3.7 0.1 3 14 216 227 214 230 0.88 XPA protein N-terminal XPA_N PF01286.18 32 ZNF302-215 - 301 8.2e-07 29.0 24.9 6 7 0.0055 5 7.3 2.4 3 14 244 255 242 261 0.84 XPA protein N-terminal XPA_N PF01286.18 32 ZNF302-215 - 301 8.2e-07 29.0 24.9 7 7 0.62 5.6e+02 0.7 0.3 3 16 272 286 270 289 0.70 XPA protein N-terminal # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF302-215.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF302-215.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF302-215.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF302-215.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF302-215.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:03:41 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZNF304-201 - 659 4e-95 308.4 111.1 1 18 9.8 1.4e+04 -3.1 0.3 13 21 87 95 86 95 0.81 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF304-201 - 659 4e-95 308.4 111.1 2 18 2.4 3.3e+03 -1.2 0.6 2 24 104 126 103 127 0.60 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF304-201 - 659 4e-95 308.4 111.1 3 18 0.24 3.3e+02 2.0 0.1 1 13 131 143 131 147 0.88 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF304-201 - 659 4e-95 308.4 111.1 4 18 0.069 96 3.7 0.1 9 25 245 261 242 262 0.86 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF304-201 - 659 4e-95 308.4 111.1 5 18 2.8e-06 0.0038 17.6 0.4 2 26 266 290 265 290 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF304-201 - 659 4e-95 308.4 111.1 6 18 9.4e-09 1.3e-05 25.4 5.6 1 25 293 317 293 318 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF304-201 - 659 4e-95 308.4 111.1 7 18 2.9e-09 4e-06 27.0 0.1 2 25 322 345 321 346 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF304-201 - 659 4e-95 308.4 111.1 8 18 1.3e-11 1.8e-08 34.5 1.4 1 25 349 373 349 374 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF304-201 - 659 4e-95 308.4 111.1 9 18 1.3e-11 1.9e-08 34.4 0.6 2 25 378 401 377 402 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF304-201 - 659 4e-95 308.4 111.1 10 18 4.3e-08 5.9e-05 23.3 0.7 2 26 406 430 405 430 0.90 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF304-201 - 659 4e-95 308.4 111.1 11 18 1.2e-08 1.7e-05 25.0 0.8 2 25 434 457 433 458 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF304-201 - 659 4e-95 308.4 111.1 12 18 7.2e-10 9.9e-07 28.9 0.0 2 25 462 485 461 486 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF304-201 - 659 4e-95 308.4 111.1 13 18 2e-10 2.8e-07 30.7 0.9 2 26 490 514 489 514 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF304-201 - 659 4e-95 308.4 111.1 14 18 2.3e-09 3.2e-06 27.3 1.6 1 26 517 542 517 542 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF304-201 - 659 4e-95 308.4 111.1 15 18 1.4e-08 1.9e-05 24.8 0.0 2 24 546 568 545 570 0.90 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF304-201 - 659 4e-95 308.4 111.1 16 18 4e-10 5.5e-07 29.7 1.9 1 25 573 597 573 598 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF304-201 - 659 4e-95 308.4 111.1 17 18 9.5e-11 1.3e-07 31.7 0.1 2 25 602 625 601 626 0.90 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF304-201 - 659 4e-95 308.4 111.1 18 18 0.0001 0.14 12.6 1.1 1 17 629 645 629 647 0.94 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZNF304-201 - 659 1.1e-76 249.2 132.2 1 18 0.09 1.2e+02 3.4 0.3 1 23 89 111 89 111 0.92 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF304-201 - 659 1.1e-76 249.2 132.2 2 18 0.0051 7.1 7.3 1.9 3 23 117 139 116 139 0.92 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF304-201 - 659 1.1e-76 249.2 132.2 3 18 5.1 7e+03 -2.1 0.0 11 21 177 187 173 188 0.80 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF304-201 - 659 1.1e-76 249.2 132.2 4 18 0.0047 6.5 7.4 0.5 3 20 195 214 194 215 0.88 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF304-201 - 659 1.1e-76 249.2 132.2 5 18 0.0002 0.28 11.7 0.3 1 23 251 273 251 273 0.95 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF304-201 - 659 1.1e-76 249.2 132.2 6 18 3.9e-05 0.054 14.0 7.7 1 23 279 301 279 301 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF304-201 - 659 1.1e-76 249.2 132.2 7 18 1.5e-09 2.1e-06 27.9 0.6 1 23 307 329 307 329 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF304-201 - 659 1.1e-76 249.2 132.2 8 18 7.3e-09 1e-05 25.7 1.2 1 23 335 357 335 357 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF304-201 - 659 1.1e-76 249.2 132.2 9 18 8e-09 1.1e-05 25.6 2.0 1 23 363 385 363 385 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF304-201 - 659 1.1e-76 249.2 132.2 10 18 2e-08 2.8e-05 24.3 1.0 1 23 391 413 391 413 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF304-201 - 659 1.1e-76 249.2 132.2 11 18 9.4e-07 0.0013 19.1 2.0 1 23 419 441 419 441 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF304-201 - 659 1.1e-76 249.2 132.2 12 18 5.1e-05 0.07 13.6 0.6 1 23 447 469 447 469 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF304-201 - 659 1.1e-76 249.2 132.2 13 18 6.9e-09 9.5e-06 25.8 0.3 1 23 475 497 475 497 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF304-201 - 659 1.1e-76 249.2 132.2 14 18 1.6e-09 2.2e-06 27.8 0.8 1 23 503 525 503 525 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF304-201 - 659 1.1e-76 249.2 132.2 15 18 1.3e-08 1.8e-05 24.9 3.3 1 23 531 553 531 553 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF304-201 - 659 1.1e-76 249.2 132.2 16 18 1.3e-07 0.00018 21.8 0.8 1 23 559 581 559 581 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF304-201 - 659 1.1e-76 249.2 132.2 17 18 1.4e-08 2e-05 24.8 0.4 1 23 587 609 587 609 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF304-201 - 659 1.1e-76 249.2 132.2 18 18 4.5e-09 6.1e-06 26.4 1.3 1 23 615 637 615 637 0.98 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZNF304-201 - 659 1.1e-35 119.1 132.8 1 18 0.28 3.9e+02 2.3 0.3 1 23 89 111 89 112 0.89 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF304-201 - 659 1.1e-35 119.1 132.8 2 18 0.016 22 6.2 1.3 5 23 121 139 116 140 0.86 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF304-201 - 659 1.1e-35 119.1 132.8 3 18 3 4.2e+03 -0.9 0.0 1 21 167 187 165 189 0.85 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF304-201 - 659 1.1e-35 119.1 132.8 4 18 0.39 5.3e+02 1.9 0.5 5 19 199 213 194 215 0.85 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF304-201 - 659 1.1e-35 119.1 132.8 5 18 6.2e-05 0.086 13.7 0.3 1 23 251 273 251 274 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF304-201 - 659 1.1e-35 119.1 132.8 6 18 0.11 1.5e+02 3.6 6.7 1 23 279 301 279 302 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF304-201 - 659 1.1e-35 119.1 132.8 7 18 2.3e-06 0.0032 18.2 0.6 1 23 307 329 307 330 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF304-201 - 659 1.1e-35 119.1 132.8 8 18 0.00011 0.15 13.0 1.1 3 23 337 357 335 358 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF304-201 - 659 1.1e-35 119.1 132.8 9 18 5.2e-06 0.0072 17.1 1.4 1 23 363 385 363 386 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF304-201 - 659 1.1e-35 119.1 132.8 10 18 1.8e-05 0.025 15.4 1.4 1 23 391 413 391 414 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF304-201 - 659 1.1e-35 119.1 132.8 11 18 0.00033 0.45 11.5 1.7 1 23 419 441 419 442 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF304-201 - 659 1.1e-35 119.1 132.8 12 18 2.7e-05 0.037 14.8 0.7 1 23 447 469 447 470 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF304-201 - 659 1.1e-35 119.1 132.8 13 18 1.4e-06 0.0019 18.9 0.4 1 23 475 497 475 498 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF304-201 - 659 1.1e-35 119.1 132.8 14 18 0.0004 0.56 11.2 0.8 1 23 503 525 503 526 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF304-201 - 659 1.1e-35 119.1 132.8 15 18 0.0012 1.6 9.8 3.1 1 23 531 553 531 554 0.91 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF304-201 - 659 1.1e-35 119.1 132.8 16 18 4e-05 0.055 14.3 1.1 1 23 559 581 559 582 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF304-201 - 659 1.1e-35 119.1 132.8 17 18 0.00012 0.16 12.9 0.4 1 23 587 609 587 610 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF304-201 - 659 1.1e-35 119.1 132.8 18 18 3.7e-06 0.0051 17.5 1.5 1 23 615 637 615 638 0.96 C2H2-type zinc finger KRAB PF01352.27 42 ZNF304-201 - 659 2.4e-21 75.1 1.5 1 1 2.9e-24 4e-21 74.4 1.5 1 42 13 54 13 54 0.98 KRAB box Zn-ribbon_8 PF09723.10 40 ZNF304-201 - 659 3.8e-13 49.3 63.7 1 10 0.00027 0.38 10.9 0.4 6 34 251 286 250 291 0.85 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF304-201 - 659 3.8e-13 49.3 63.7 2 10 6.6e-05 0.09 12.9 2.3 6 38 307 346 306 348 0.89 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF304-201 - 659 3.8e-13 49.3 63.7 3 10 8.7e-05 0.12 12.5 4.1 6 34 363 398 362 402 0.92 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF304-201 - 659 3.8e-13 49.3 63.7 4 10 0.056 77 3.5 6.1 6 34 391 426 390 430 0.82 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF304-201 - 659 3.8e-13 49.3 63.7 5 10 0.011 16 5.7 3.2 6 34 419 454 418 456 0.83 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF304-201 - 659 3.8e-13 49.3 63.7 6 10 0.00096 1.3 9.2 5.0 6 38 447 486 446 488 0.84 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF304-201 - 659 3.8e-13 49.3 63.7 7 10 0.00054 0.74 10.0 5.7 6 34 475 510 474 514 0.93 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF304-201 - 659 3.8e-13 49.3 63.7 8 10 0.00044 0.61 10.3 5.4 6 34 503 538 502 538 0.94 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF304-201 - 659 3.8e-13 49.3 63.7 9 10 0.00013 0.18 12.0 3.1 6 34 531 566 529 569 0.91 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF304-201 - 659 3.8e-13 49.3 63.7 10 10 1.4e-05 0.019 15.1 1.3 6 38 587 626 586 627 0.89 Zinc ribbon domain zf-C2H2_jaz PF12171.8 27 ZNF304-201 - 659 4.1e-09 36.5 76.9 1 15 8.3 1.1e+04 -3.2 0.3 4 8 91 95 89 95 0.85 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF304-201 - 659 4.1e-09 36.5 76.9 2 15 9.8 1.4e+04 -3.4 0.5 6 22 121 137 121 139 0.68 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF304-201 - 659 4.1e-09 36.5 76.9 3 15 0.019 26 5.2 0.0 2 22 251 271 250 271 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF304-201 - 659 4.1e-09 36.5 76.9 4 15 0.046 64 4.0 3.4 2 22 279 299 278 299 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF304-201 - 659 4.1e-09 36.5 76.9 5 15 0.0016 2.3 8.6 0.3 2 22 307 327 306 327 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF304-201 - 659 4.1e-09 36.5 76.9 6 15 0.0068 9.3 6.7 0.2 2 22 335 355 334 355 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF304-201 - 659 4.1e-09 36.5 76.9 7 15 0.066 91 3.5 0.2 2 22 363 383 362 383 0.89 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF304-201 - 659 4.1e-09 36.5 76.9 8 15 0.012 16 5.9 0.2 2 22 391 411 390 411 0.90 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF304-201 - 659 4.1e-09 36.5 76.9 9 15 0.00018 0.25 11.7 0.2 2 21 419 438 418 439 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF304-201 - 659 4.1e-09 36.5 76.9 10 15 0.00045 0.63 10.4 0.1 2 22 475 495 474 495 0.95 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF304-201 - 659 4.1e-09 36.5 76.9 11 15 0.0035 4.9 7.6 0.1 2 22 503 523 502 523 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF304-201 - 659 4.1e-09 36.5 76.9 12 15 0.21 2.8e+02 1.9 1.1 2 22 531 551 530 551 0.90 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF304-201 - 659 4.1e-09 36.5 76.9 13 15 0.00063 0.87 10.0 0.1 2 22 559 579 558 579 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF304-201 - 659 4.1e-09 36.5 76.9 14 15 0.016 22 5.5 0.0 2 21 587 606 586 607 0.85 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF304-201 - 659 4.1e-09 36.5 76.9 15 15 0.013 18 5.8 0.1 2 22 615 635 614 635 0.93 Zinc-finger double-stranded RNA-binding zf_UBZ PF18439.1 32 ZNF304-201 - 659 3.4e-08 32.9 78.1 1 16 3.3 4.5e+03 -2.7 0.5 4 20 90 107 88 108 0.70 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF304-201 - 659 3.4e-08 32.9 78.1 2 16 0.48 6.7e+02 0.0 0.4 7 21 199 214 198 214 0.90 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF304-201 - 659 3.4e-08 32.9 78.1 3 16 4.9 6.8e+03 -3.2 0.1 3 14 251 262 251 266 0.80 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF304-201 - 659 3.4e-08 32.9 78.1 4 16 0.029 40 3.9 0.6 3 13 279 289 278 301 0.81 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF304-201 - 659 3.4e-08 32.9 78.1 5 16 0.00037 0.51 10.0 0.2 2 16 306 321 305 326 0.78 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF304-201 - 659 3.4e-08 32.9 78.1 6 16 0.0035 4.8 6.9 0.2 2 16 334 349 333 354 0.76 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF304-201 - 659 3.4e-08 32.9 78.1 7 16 0.0058 8 6.1 0.1 3 21 363 382 361 386 0.81 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF304-201 - 659 3.4e-08 32.9 78.1 8 16 0.00061 0.84 9.3 0.6 3 20 391 409 389 409 0.89 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF304-201 - 659 3.4e-08 32.9 78.1 9 16 0.042 58 3.4 0.2 3 15 419 431 417 438 0.81 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF304-201 - 659 3.4e-08 32.9 78.1 10 16 0.0026 3.6 7.3 0.4 2 12 446 456 445 466 0.81 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF304-201 - 659 3.4e-08 32.9 78.1 11 16 0.003 4.1 7.1 0.1 3 16 475 489 473 494 0.77 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF304-201 - 659 3.4e-08 32.9 78.1 12 16 0.01 14 5.4 0.1 3 15 503 515 501 522 0.84 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF304-201 - 659 3.4e-08 32.9 78.1 13 16 0.01 14 5.4 0.8 3 15 531 543 529 550 0.84 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF304-201 - 659 3.4e-08 32.9 78.1 14 16 0.0034 4.7 6.9 0.1 3 15 559 571 557 578 0.73 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF304-201 - 659 3.4e-08 32.9 78.1 15 16 0.0056 7.7 6.2 0.1 3 13 587 597 585 601 0.87 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF304-201 - 659 3.4e-08 32.9 78.1 16 16 0.0037 5.1 6.8 0.1 3 13 615 625 613 633 0.83 Ubiquitin-Binding Zinc Finger # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF304-201.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF304-201.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF304-201.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF304-201.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF304-201.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:03:41 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZNF304-202 - 659 4e-95 308.4 111.1 1 18 9.8 1.4e+04 -3.1 0.3 13 21 87 95 86 95 0.81 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF304-202 - 659 4e-95 308.4 111.1 2 18 2.4 3.3e+03 -1.2 0.6 2 24 104 126 103 127 0.60 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF304-202 - 659 4e-95 308.4 111.1 3 18 0.24 3.3e+02 2.0 0.1 1 13 131 143 131 147 0.88 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF304-202 - 659 4e-95 308.4 111.1 4 18 0.069 96 3.7 0.1 9 25 245 261 242 262 0.86 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF304-202 - 659 4e-95 308.4 111.1 5 18 2.8e-06 0.0038 17.6 0.4 2 26 266 290 265 290 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF304-202 - 659 4e-95 308.4 111.1 6 18 9.4e-09 1.3e-05 25.4 5.6 1 25 293 317 293 318 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF304-202 - 659 4e-95 308.4 111.1 7 18 2.9e-09 4e-06 27.0 0.1 2 25 322 345 321 346 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF304-202 - 659 4e-95 308.4 111.1 8 18 1.3e-11 1.8e-08 34.5 1.4 1 25 349 373 349 374 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF304-202 - 659 4e-95 308.4 111.1 9 18 1.3e-11 1.9e-08 34.4 0.6 2 25 378 401 377 402 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF304-202 - 659 4e-95 308.4 111.1 10 18 4.3e-08 5.9e-05 23.3 0.7 2 26 406 430 405 430 0.90 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF304-202 - 659 4e-95 308.4 111.1 11 18 1.2e-08 1.7e-05 25.0 0.8 2 25 434 457 433 458 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF304-202 - 659 4e-95 308.4 111.1 12 18 7.2e-10 9.9e-07 28.9 0.0 2 25 462 485 461 486 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF304-202 - 659 4e-95 308.4 111.1 13 18 2e-10 2.8e-07 30.7 0.9 2 26 490 514 489 514 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF304-202 - 659 4e-95 308.4 111.1 14 18 2.3e-09 3.2e-06 27.3 1.6 1 26 517 542 517 542 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF304-202 - 659 4e-95 308.4 111.1 15 18 1.4e-08 1.9e-05 24.8 0.0 2 24 546 568 545 570 0.90 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF304-202 - 659 4e-95 308.4 111.1 16 18 4e-10 5.5e-07 29.7 1.9 1 25 573 597 573 598 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF304-202 - 659 4e-95 308.4 111.1 17 18 9.5e-11 1.3e-07 31.7 0.1 2 25 602 625 601 626 0.90 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF304-202 - 659 4e-95 308.4 111.1 18 18 0.0001 0.14 12.6 1.1 1 17 629 645 629 647 0.94 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZNF304-202 - 659 1.1e-76 249.2 132.2 1 18 0.09 1.2e+02 3.4 0.3 1 23 89 111 89 111 0.92 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF304-202 - 659 1.1e-76 249.2 132.2 2 18 0.0051 7.1 7.3 1.9 3 23 117 139 116 139 0.92 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF304-202 - 659 1.1e-76 249.2 132.2 3 18 5.1 7e+03 -2.1 0.0 11 21 177 187 173 188 0.80 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF304-202 - 659 1.1e-76 249.2 132.2 4 18 0.0047 6.5 7.4 0.5 3 20 195 214 194 215 0.88 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF304-202 - 659 1.1e-76 249.2 132.2 5 18 0.0002 0.28 11.7 0.3 1 23 251 273 251 273 0.95 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF304-202 - 659 1.1e-76 249.2 132.2 6 18 3.9e-05 0.054 14.0 7.7 1 23 279 301 279 301 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF304-202 - 659 1.1e-76 249.2 132.2 7 18 1.5e-09 2.1e-06 27.9 0.6 1 23 307 329 307 329 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF304-202 - 659 1.1e-76 249.2 132.2 8 18 7.3e-09 1e-05 25.7 1.2 1 23 335 357 335 357 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF304-202 - 659 1.1e-76 249.2 132.2 9 18 8e-09 1.1e-05 25.6 2.0 1 23 363 385 363 385 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF304-202 - 659 1.1e-76 249.2 132.2 10 18 2e-08 2.8e-05 24.3 1.0 1 23 391 413 391 413 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF304-202 - 659 1.1e-76 249.2 132.2 11 18 9.4e-07 0.0013 19.1 2.0 1 23 419 441 419 441 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF304-202 - 659 1.1e-76 249.2 132.2 12 18 5.1e-05 0.07 13.6 0.6 1 23 447 469 447 469 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF304-202 - 659 1.1e-76 249.2 132.2 13 18 6.9e-09 9.5e-06 25.8 0.3 1 23 475 497 475 497 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF304-202 - 659 1.1e-76 249.2 132.2 14 18 1.6e-09 2.2e-06 27.8 0.8 1 23 503 525 503 525 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF304-202 - 659 1.1e-76 249.2 132.2 15 18 1.3e-08 1.8e-05 24.9 3.3 1 23 531 553 531 553 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF304-202 - 659 1.1e-76 249.2 132.2 16 18 1.3e-07 0.00018 21.8 0.8 1 23 559 581 559 581 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF304-202 - 659 1.1e-76 249.2 132.2 17 18 1.4e-08 2e-05 24.8 0.4 1 23 587 609 587 609 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF304-202 - 659 1.1e-76 249.2 132.2 18 18 4.5e-09 6.1e-06 26.4 1.3 1 23 615 637 615 637 0.98 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZNF304-202 - 659 1.1e-35 119.1 132.8 1 18 0.28 3.9e+02 2.3 0.3 1 23 89 111 89 112 0.89 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF304-202 - 659 1.1e-35 119.1 132.8 2 18 0.016 22 6.2 1.3 5 23 121 139 116 140 0.86 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF304-202 - 659 1.1e-35 119.1 132.8 3 18 3 4.2e+03 -0.9 0.0 1 21 167 187 165 189 0.85 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF304-202 - 659 1.1e-35 119.1 132.8 4 18 0.39 5.3e+02 1.9 0.5 5 19 199 213 194 215 0.85 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF304-202 - 659 1.1e-35 119.1 132.8 5 18 6.2e-05 0.086 13.7 0.3 1 23 251 273 251 274 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF304-202 - 659 1.1e-35 119.1 132.8 6 18 0.11 1.5e+02 3.6 6.7 1 23 279 301 279 302 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF304-202 - 659 1.1e-35 119.1 132.8 7 18 2.3e-06 0.0032 18.2 0.6 1 23 307 329 307 330 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF304-202 - 659 1.1e-35 119.1 132.8 8 18 0.00011 0.15 13.0 1.1 3 23 337 357 335 358 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF304-202 - 659 1.1e-35 119.1 132.8 9 18 5.2e-06 0.0072 17.1 1.4 1 23 363 385 363 386 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF304-202 - 659 1.1e-35 119.1 132.8 10 18 1.8e-05 0.025 15.4 1.4 1 23 391 413 391 414 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF304-202 - 659 1.1e-35 119.1 132.8 11 18 0.00033 0.45 11.5 1.7 1 23 419 441 419 442 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF304-202 - 659 1.1e-35 119.1 132.8 12 18 2.7e-05 0.037 14.8 0.7 1 23 447 469 447 470 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF304-202 - 659 1.1e-35 119.1 132.8 13 18 1.4e-06 0.0019 18.9 0.4 1 23 475 497 475 498 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF304-202 - 659 1.1e-35 119.1 132.8 14 18 0.0004 0.56 11.2 0.8 1 23 503 525 503 526 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF304-202 - 659 1.1e-35 119.1 132.8 15 18 0.0012 1.6 9.8 3.1 1 23 531 553 531 554 0.91 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF304-202 - 659 1.1e-35 119.1 132.8 16 18 4e-05 0.055 14.3 1.1 1 23 559 581 559 582 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF304-202 - 659 1.1e-35 119.1 132.8 17 18 0.00012 0.16 12.9 0.4 1 23 587 609 587 610 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF304-202 - 659 1.1e-35 119.1 132.8 18 18 3.7e-06 0.0051 17.5 1.5 1 23 615 637 615 638 0.96 C2H2-type zinc finger KRAB PF01352.27 42 ZNF304-202 - 659 2.4e-21 75.1 1.5 1 1 2.9e-24 4e-21 74.4 1.5 1 42 13 54 13 54 0.98 KRAB box Zn-ribbon_8 PF09723.10 40 ZNF304-202 - 659 3.8e-13 49.3 63.7 1 10 0.00027 0.38 10.9 0.4 6 34 251 286 250 291 0.85 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF304-202 - 659 3.8e-13 49.3 63.7 2 10 6.6e-05 0.09 12.9 2.3 6 38 307 346 306 348 0.89 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF304-202 - 659 3.8e-13 49.3 63.7 3 10 8.7e-05 0.12 12.5 4.1 6 34 363 398 362 402 0.92 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF304-202 - 659 3.8e-13 49.3 63.7 4 10 0.056 77 3.5 6.1 6 34 391 426 390 430 0.82 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF304-202 - 659 3.8e-13 49.3 63.7 5 10 0.011 16 5.7 3.2 6 34 419 454 418 456 0.83 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF304-202 - 659 3.8e-13 49.3 63.7 6 10 0.00096 1.3 9.2 5.0 6 38 447 486 446 488 0.84 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF304-202 - 659 3.8e-13 49.3 63.7 7 10 0.00054 0.74 10.0 5.7 6 34 475 510 474 514 0.93 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF304-202 - 659 3.8e-13 49.3 63.7 8 10 0.00044 0.61 10.3 5.4 6 34 503 538 502 538 0.94 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF304-202 - 659 3.8e-13 49.3 63.7 9 10 0.00013 0.18 12.0 3.1 6 34 531 566 529 569 0.91 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF304-202 - 659 3.8e-13 49.3 63.7 10 10 1.4e-05 0.019 15.1 1.3 6 38 587 626 586 627 0.89 Zinc ribbon domain zf-C2H2_jaz PF12171.8 27 ZNF304-202 - 659 4.1e-09 36.5 76.9 1 15 8.3 1.1e+04 -3.2 0.3 4 8 91 95 89 95 0.85 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF304-202 - 659 4.1e-09 36.5 76.9 2 15 9.8 1.4e+04 -3.4 0.5 6 22 121 137 121 139 0.68 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF304-202 - 659 4.1e-09 36.5 76.9 3 15 0.019 26 5.2 0.0 2 22 251 271 250 271 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF304-202 - 659 4.1e-09 36.5 76.9 4 15 0.046 64 4.0 3.4 2 22 279 299 278 299 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF304-202 - 659 4.1e-09 36.5 76.9 5 15 0.0016 2.3 8.6 0.3 2 22 307 327 306 327 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF304-202 - 659 4.1e-09 36.5 76.9 6 15 0.0068 9.3 6.7 0.2 2 22 335 355 334 355 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF304-202 - 659 4.1e-09 36.5 76.9 7 15 0.066 91 3.5 0.2 2 22 363 383 362 383 0.89 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF304-202 - 659 4.1e-09 36.5 76.9 8 15 0.012 16 5.9 0.2 2 22 391 411 390 411 0.90 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF304-202 - 659 4.1e-09 36.5 76.9 9 15 0.00018 0.25 11.7 0.2 2 21 419 438 418 439 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF304-202 - 659 4.1e-09 36.5 76.9 10 15 0.00045 0.63 10.4 0.1 2 22 475 495 474 495 0.95 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF304-202 - 659 4.1e-09 36.5 76.9 11 15 0.0035 4.9 7.6 0.1 2 22 503 523 502 523 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF304-202 - 659 4.1e-09 36.5 76.9 12 15 0.21 2.8e+02 1.9 1.1 2 22 531 551 530 551 0.90 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF304-202 - 659 4.1e-09 36.5 76.9 13 15 0.00063 0.87 10.0 0.1 2 22 559 579 558 579 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF304-202 - 659 4.1e-09 36.5 76.9 14 15 0.016 22 5.5 0.0 2 21 587 606 586 607 0.85 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF304-202 - 659 4.1e-09 36.5 76.9 15 15 0.013 18 5.8 0.1 2 22 615 635 614 635 0.93 Zinc-finger double-stranded RNA-binding zf_UBZ PF18439.1 32 ZNF304-202 - 659 3.4e-08 32.9 78.1 1 16 3.3 4.5e+03 -2.7 0.5 4 20 90 107 88 108 0.70 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF304-202 - 659 3.4e-08 32.9 78.1 2 16 0.48 6.7e+02 0.0 0.4 7 21 199 214 198 214 0.90 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF304-202 - 659 3.4e-08 32.9 78.1 3 16 4.9 6.8e+03 -3.2 0.1 3 14 251 262 251 266 0.80 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF304-202 - 659 3.4e-08 32.9 78.1 4 16 0.029 40 3.9 0.6 3 13 279 289 278 301 0.81 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF304-202 - 659 3.4e-08 32.9 78.1 5 16 0.00037 0.51 10.0 0.2 2 16 306 321 305 326 0.78 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF304-202 - 659 3.4e-08 32.9 78.1 6 16 0.0035 4.8 6.9 0.2 2 16 334 349 333 354 0.76 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF304-202 - 659 3.4e-08 32.9 78.1 7 16 0.0058 8 6.1 0.1 3 21 363 382 361 386 0.81 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF304-202 - 659 3.4e-08 32.9 78.1 8 16 0.00061 0.84 9.3 0.6 3 20 391 409 389 409 0.89 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF304-202 - 659 3.4e-08 32.9 78.1 9 16 0.042 58 3.4 0.2 3 15 419 431 417 438 0.81 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF304-202 - 659 3.4e-08 32.9 78.1 10 16 0.0026 3.6 7.3 0.4 2 12 446 456 445 466 0.81 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF304-202 - 659 3.4e-08 32.9 78.1 11 16 0.003 4.1 7.1 0.1 3 16 475 489 473 494 0.77 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF304-202 - 659 3.4e-08 32.9 78.1 12 16 0.01 14 5.4 0.1 3 15 503 515 501 522 0.84 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF304-202 - 659 3.4e-08 32.9 78.1 13 16 0.01 14 5.4 0.8 3 15 531 543 529 550 0.84 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF304-202 - 659 3.4e-08 32.9 78.1 14 16 0.0034 4.7 6.9 0.1 3 15 559 571 557 578 0.73 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF304-202 - 659 3.4e-08 32.9 78.1 15 16 0.0056 7.7 6.2 0.1 3 13 587 597 585 601 0.87 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF304-202 - 659 3.4e-08 32.9 78.1 16 16 0.0037 5.1 6.8 0.1 3 13 615 625 613 633 0.83 Ubiquitin-Binding Zinc Finger # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF304-202.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF304-202.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF304-202.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF304-202.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF304-202.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:03:42 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZNF304-203 - 706 1.5e-94 306.6 111.1 1 18 8.2 1.5e+04 -3.2 0.3 13 21 134 142 133 142 0.81 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF304-203 - 706 1.5e-94 306.6 111.1 2 18 2 3.6e+03 -1.3 0.6 2 24 151 173 150 174 0.60 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF304-203 - 706 1.5e-94 306.6 111.1 3 18 0.2 3.6e+02 1.9 0.1 1 13 178 190 178 194 0.88 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF304-203 - 706 1.5e-94 306.6 111.1 4 18 0.058 1e+02 3.6 0.1 9 25 292 308 289 309 0.86 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF304-203 - 706 1.5e-94 306.6 111.1 5 18 2.3e-06 0.0042 17.5 0.4 2 26 313 337 312 337 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF304-203 - 706 1.5e-94 306.6 111.1 6 18 7.8e-09 1.4e-05 25.3 5.6 1 25 340 364 340 365 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF304-203 - 706 1.5e-94 306.6 111.1 7 18 2.4e-09 4.3e-06 26.9 0.1 2 25 369 392 368 393 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF304-203 - 706 1.5e-94 306.6 111.1 8 18 1.1e-11 1.9e-08 34.3 1.4 1 25 396 420 396 421 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF304-203 - 706 1.5e-94 306.6 111.1 9 18 1.1e-11 2e-08 34.3 0.6 2 25 425 448 424 449 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF304-203 - 706 1.5e-94 306.6 111.1 10 18 3.6e-08 6.4e-05 23.2 0.7 2 26 453 477 452 477 0.90 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF304-203 - 706 1.5e-94 306.6 111.1 11 18 1e-08 1.8e-05 24.9 0.8 2 25 481 504 480 505 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF304-203 - 706 1.5e-94 306.6 111.1 12 18 6e-10 1.1e-06 28.8 0.0 2 25 509 532 508 533 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF304-203 - 706 1.5e-94 306.6 111.1 13 18 1.7e-10 3e-07 30.6 0.9 2 26 537 561 536 561 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF304-203 - 706 1.5e-94 306.6 111.1 14 18 1.9e-09 3.5e-06 27.2 1.6 1 26 564 589 564 589 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF304-203 - 706 1.5e-94 306.6 111.1 15 18 1.2e-08 2.1e-05 24.7 0.0 2 24 593 615 592 617 0.90 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF304-203 - 706 1.5e-94 306.6 111.1 16 18 3.3e-10 6e-07 29.6 1.9 1 25 620 644 620 645 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF304-203 - 706 1.5e-94 306.6 111.1 17 18 7.9e-11 1.4e-07 31.6 0.1 2 25 649 672 648 673 0.90 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF304-203 - 706 1.5e-94 306.6 111.1 18 18 8.7e-05 0.16 12.5 1.1 1 17 676 692 676 694 0.94 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZNF304-203 - 706 4.2e-76 247.4 132.2 1 18 0.075 1.3e+02 3.3 0.3 1 23 136 158 136 158 0.92 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF304-203 - 706 4.2e-76 247.4 132.2 2 18 0.0043 7.7 7.2 1.9 3 23 164 186 163 186 0.92 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF304-203 - 706 4.2e-76 247.4 132.2 3 18 4.2 7.6e+03 -2.2 0.0 11 21 224 234 220 235 0.80 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF304-203 - 706 4.2e-76 247.4 132.2 4 18 0.0039 7 7.3 0.5 3 20 242 261 241 262 0.88 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF304-203 - 706 4.2e-76 247.4 132.2 5 18 0.00017 0.3 11.6 0.3 1 23 298 320 298 320 0.95 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF304-203 - 706 4.2e-76 247.4 132.2 6 18 3.3e-05 0.058 13.9 7.7 1 23 326 348 326 348 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF304-203 - 706 4.2e-76 247.4 132.2 7 18 1.3e-09 2.3e-06 27.7 0.6 1 23 354 376 354 376 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF304-203 - 706 4.2e-76 247.4 132.2 8 18 6.1e-09 1.1e-05 25.6 1.2 1 23 382 404 382 404 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF304-203 - 706 4.2e-76 247.4 132.2 9 18 6.6e-09 1.2e-05 25.5 2.0 1 23 410 432 410 432 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF304-203 - 706 4.2e-76 247.4 132.2 10 18 1.7e-08 3e-05 24.2 1.0 1 23 438 460 438 460 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF304-203 - 706 4.2e-76 247.4 132.2 11 18 7.8e-07 0.0014 19.0 2.0 1 23 466 488 466 488 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF304-203 - 706 4.2e-76 247.4 132.2 12 18 4.2e-05 0.076 13.5 0.6 1 23 494 516 494 516 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF304-203 - 706 4.2e-76 247.4 132.2 13 18 5.7e-09 1e-05 25.7 0.3 1 23 522 544 522 544 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF304-203 - 706 4.2e-76 247.4 132.2 14 18 1.4e-09 2.4e-06 27.7 0.8 1 23 550 572 550 572 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF304-203 - 706 4.2e-76 247.4 132.2 15 18 1.1e-08 2e-05 24.8 3.3 1 23 578 600 578 600 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF304-203 - 706 4.2e-76 247.4 132.2 16 18 1.1e-07 0.0002 21.7 0.8 1 23 606 628 606 628 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF304-203 - 706 4.2e-76 247.4 132.2 17 18 1.2e-08 2.1e-05 24.7 0.4 1 23 634 656 634 656 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF304-203 - 706 4.2e-76 247.4 132.2 18 18 3.7e-09 6.7e-06 26.3 1.3 1 23 662 684 662 684 0.98 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZNF304-203 - 706 2.7e-35 118.0 132.1 1 18 0.24 4.2e+02 2.2 0.3 1 23 136 158 136 159 0.89 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF304-203 - 706 2.7e-35 118.0 132.1 2 18 0.013 24 6.1 1.3 5 23 168 186 163 187 0.86 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF304-203 - 706 2.7e-35 118.0 132.1 3 18 3 5.4e+03 -1.2 0.0 1 20 214 233 214 235 0.85 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF304-203 - 706 2.7e-35 118.0 132.1 4 18 0.32 5.8e+02 1.8 0.5 5 19 246 260 241 262 0.85 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF304-203 - 706 2.7e-35 118.0 132.1 5 18 5.2e-05 0.093 13.6 0.3 1 23 298 320 298 321 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF304-203 - 706 2.7e-35 118.0 132.1 6 18 0.092 1.6e+02 3.5 6.7 1 23 326 348 326 349 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF304-203 - 706 2.7e-35 118.0 132.1 7 18 1.9e-06 0.0034 18.1 0.6 1 23 354 376 354 377 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF304-203 - 706 2.7e-35 118.0 132.1 8 18 8.8e-05 0.16 12.9 1.1 3 23 384 404 382 405 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF304-203 - 706 2.7e-35 118.0 132.1 9 18 4.4e-06 0.0078 17.0 1.4 1 23 410 432 410 433 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF304-203 - 706 2.7e-35 118.0 132.1 10 18 1.5e-05 0.027 15.3 1.4 1 23 438 460 438 461 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF304-203 - 706 2.7e-35 118.0 132.1 11 18 0.00027 0.49 11.4 1.7 1 23 466 488 466 489 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF304-203 - 706 2.7e-35 118.0 132.1 12 18 2.3e-05 0.041 14.7 0.7 1 23 494 516 494 517 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF304-203 - 706 2.7e-35 118.0 132.1 13 18 1.1e-06 0.002 18.8 0.4 1 23 522 544 522 545 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF304-203 - 706 2.7e-35 118.0 132.1 14 18 0.00034 0.61 11.1 0.8 1 23 550 572 550 573 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF304-203 - 706 2.7e-35 118.0 132.1 15 18 0.00097 1.7 9.7 3.1 1 23 578 600 578 601 0.91 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF304-203 - 706 2.7e-35 118.0 132.1 16 18 3.3e-05 0.06 14.2 1.1 1 23 606 628 606 629 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF304-203 - 706 2.7e-35 118.0 132.1 17 18 9.6e-05 0.17 12.8 0.4 1 23 634 656 634 657 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF304-203 - 706 2.7e-35 118.0 132.1 18 18 3.1e-06 0.0055 17.4 1.5 1 23 662 684 662 685 0.96 C2H2-type zinc finger KRAB PF01352.27 42 ZNF304-203 - 706 2.5e-21 75.1 1.5 1 1 2.4e-24 4.4e-21 74.3 1.5 1 42 13 54 13 54 0.98 KRAB box Zn-ribbon_8 PF09723.10 40 ZNF304-203 - 706 5.1e-13 48.9 63.2 1 10 0.00022 0.39 10.9 0.3 6 34 298 333 297 341 0.86 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF304-203 - 706 5.1e-13 48.9 63.2 2 10 5.5e-05 0.098 12.8 2.3 6 38 354 393 353 395 0.89 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF304-203 - 706 5.1e-13 48.9 63.2 3 10 8.6e-05 0.15 12.2 4.3 6 34 410 445 409 449 0.92 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF304-203 - 706 5.1e-13 48.9 63.2 4 10 0.041 73 3.6 5.8 6 34 438 473 437 476 0.81 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF304-203 - 706 5.1e-13 48.9 63.2 5 10 0.0075 13 6.0 2.9 6 34 466 501 465 503 0.83 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF304-203 - 706 5.1e-13 48.9 63.2 6 10 0.00054 0.97 9.6 4.5 6 38 494 533 492 536 0.84 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF304-203 - 706 5.1e-13 48.9 63.2 7 10 0.00053 0.95 9.6 6.0 6 34 522 557 520 561 0.93 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF304-203 - 706 5.1e-13 48.9 63.2 8 10 0.00039 0.69 10.1 5.5 6 34 550 585 549 585 0.94 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF304-203 - 706 5.1e-13 48.9 63.2 9 10 0.00011 0.19 11.9 3.0 6 34 578 613 576 616 0.91 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF304-203 - 706 5.1e-13 48.9 63.2 10 10 1.1e-05 0.02 15.0 1.3 6 38 634 673 633 674 0.89 Zinc ribbon domain zf-C2H2_jaz PF12171.8 27 ZNF304-203 - 706 6.2e-10 39.1 72.8 1 15 6.9 1.2e+04 -3.3 0.3 4 8 138 142 136 142 0.85 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF304-203 - 706 6.2e-10 39.1 72.8 2 15 8.1 1.5e+04 -3.5 0.5 6 22 168 184 168 186 0.68 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF304-203 - 706 6.2e-10 39.1 72.8 3 15 0.016 28 5.1 0.0 2 22 298 318 297 318 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF304-203 - 706 6.2e-10 39.1 72.8 4 15 0.039 69 3.9 3.4 2 22 326 346 325 346 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF304-203 - 706 6.2e-10 39.1 72.8 5 15 0.0014 2.5 8.5 0.3 2 22 354 374 353 374 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF304-203 - 706 6.2e-10 39.1 72.8 6 15 0.0056 10 6.6 0.2 2 22 382 402 381 402 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF304-203 - 706 6.2e-10 39.1 72.8 7 15 0.055 98 3.4 0.2 2 22 410 430 409 430 0.89 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF304-203 - 706 6.2e-10 39.1 72.8 8 15 0.0099 18 5.8 0.2 2 22 438 458 437 458 0.90 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF304-203 - 706 6.2e-10 39.1 72.8 9 15 0.00015 0.28 11.5 0.2 2 21 466 485 465 486 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF304-203 - 706 6.2e-10 39.1 72.8 10 15 0.00038 0.68 10.3 0.1 2 22 522 542 521 542 0.95 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF304-203 - 706 6.2e-10 39.1 72.8 11 15 0.0029 5.3 7.5 0.1 2 22 550 570 549 570 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF304-203 - 706 6.2e-10 39.1 72.8 12 15 0.17 3.1e+02 1.8 1.1 2 22 578 598 577 598 0.90 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF304-203 - 706 6.2e-10 39.1 72.8 13 15 0.00052 0.94 9.9 0.1 2 22 606 626 605 626 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF304-203 - 706 6.2e-10 39.1 72.8 14 15 0.013 24 5.4 0.0 2 21 634 653 633 654 0.85 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF304-203 - 706 6.2e-10 39.1 72.8 15 15 0.011 19 5.7 0.1 2 22 662 682 661 682 0.93 Zinc-finger double-stranded RNA-binding zf_UBZ PF18439.1 32 ZNF304-203 - 706 1e-07 31.4 78.1 1 16 2.7 4.9e+03 -2.8 0.5 4 20 137 154 135 155 0.70 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF304-203 - 706 1e-07 31.4 78.1 2 16 0.4 7.2e+02 -0.1 0.4 7 21 246 261 245 261 0.90 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF304-203 - 706 1e-07 31.4 78.1 3 16 4.1 7.3e+03 -3.3 0.1 3 14 298 309 298 313 0.80 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF304-203 - 706 1e-07 31.4 78.1 4 16 0.024 43 3.8 0.6 3 13 326 336 325 348 0.81 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF304-203 - 706 1e-07 31.4 78.1 5 16 0.00031 0.55 9.9 0.2 2 16 353 368 352 373 0.78 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF304-203 - 706 1e-07 31.4 78.1 6 16 0.0029 5.2 6.7 0.2 2 16 381 396 380 401 0.76 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF304-203 - 706 1e-07 31.4 78.1 7 16 0.0048 8.7 6.0 0.1 3 21 410 429 408 433 0.81 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF304-203 - 706 1e-07 31.4 78.1 8 16 0.00051 0.91 9.2 0.6 3 20 438 456 436 456 0.89 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF304-203 - 706 1e-07 31.4 78.1 9 16 0.035 62 3.3 0.2 3 15 466 478 464 485 0.81 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF304-203 - 706 1e-07 31.4 78.1 10 16 0.0021 3.8 7.2 0.4 2 12 493 503 492 513 0.81 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF304-203 - 706 1e-07 31.4 78.1 11 16 0.0025 4.5 7.0 0.1 3 16 522 536 520 541 0.77 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF304-203 - 706 1e-07 31.4 78.1 12 16 0.0084 15 5.3 0.1 3 15 550 562 548 569 0.84 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF304-203 - 706 1e-07 31.4 78.1 13 16 0.0085 15 5.3 0.8 3 15 578 590 576 597 0.84 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF304-203 - 706 1e-07 31.4 78.1 14 16 0.0028 5.1 6.8 0.1 3 15 606 618 604 625 0.73 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF304-203 - 706 1e-07 31.4 78.1 15 16 0.0046 8.3 6.1 0.1 3 13 634 644 632 648 0.87 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF304-203 - 706 1e-07 31.4 78.1 16 16 0.0031 5.5 6.7 0.1 3 13 662 672 660 680 0.83 Ubiquitin-Binding Zinc Finger # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF304-203.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF304-203.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF304-203.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF304-203.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF304-203.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:03:42 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZNF304-204 - 617 7.1e-96 310.7 110.5 1 18 9.8 1.3e+04 -3.0 0.3 13 21 45 53 44 53 0.81 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF304-204 - 617 7.1e-96 310.7 110.5 2 18 2.4 3.1e+03 -1.1 0.6 2 24 62 84 61 85 0.60 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF304-204 - 617 7.1e-96 310.7 110.5 3 18 0.24 3e+02 2.1 0.0 1 13 89 101 89 106 0.89 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF304-204 - 617 7.1e-96 310.7 110.5 4 18 0.069 89 3.8 0.1 9 25 203 219 200 220 0.86 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF304-204 - 617 7.1e-96 310.7 110.5 5 18 2.8e-06 0.0036 17.7 0.4 2 26 224 248 223 248 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF304-204 - 617 7.1e-96 310.7 110.5 6 18 9.4e-09 1.2e-05 25.5 5.6 1 25 251 275 251 276 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF304-204 - 617 7.1e-96 310.7 110.5 7 18 2.9e-09 3.7e-06 27.1 0.1 2 25 280 303 279 304 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF304-204 - 617 7.1e-96 310.7 110.5 8 18 1.3e-11 1.6e-08 34.6 1.4 1 25 307 331 307 332 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF304-204 - 617 7.1e-96 310.7 110.5 9 18 1.3e-11 1.7e-08 34.5 0.6 2 25 336 359 335 360 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF304-204 - 617 7.1e-96 310.7 110.5 10 18 4.3e-08 5.5e-05 23.4 0.7 2 26 364 388 363 388 0.90 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF304-204 - 617 7.1e-96 310.7 110.5 11 18 1.2e-08 1.6e-05 25.1 0.8 2 25 392 415 391 416 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF304-204 - 617 7.1e-96 310.7 110.5 12 18 7.2e-10 9.2e-07 29.0 0.0 2 25 420 443 419 444 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF304-204 - 617 7.1e-96 310.7 110.5 13 18 2e-10 2.5e-07 30.8 0.9 2 26 448 472 447 472 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF304-204 - 617 7.1e-96 310.7 110.5 14 18 2.3e-09 3e-06 27.4 1.6 1 26 475 500 475 500 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF304-204 - 617 7.1e-96 310.7 110.5 15 18 1.4e-08 1.8e-05 24.9 0.0 2 24 504 526 503 528 0.90 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF304-204 - 617 7.1e-96 310.7 110.5 16 18 4e-10 5.1e-07 29.8 1.9 1 25 531 555 531 556 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF304-204 - 617 7.1e-96 310.7 110.5 17 18 9.5e-11 1.2e-07 31.8 0.1 2 25 560 583 559 584 0.90 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF304-204 - 617 7.1e-96 310.7 110.5 18 18 0.0001 0.13 12.7 1.1 1 17 587 603 587 605 0.94 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZNF304-204 - 617 2.9e-77 251.1 132.2 1 18 0.09 1.2e+02 3.5 0.3 1 23 47 69 47 69 0.92 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF304-204 - 617 2.9e-77 251.1 132.2 2 18 0.0051 6.5 7.4 1.9 3 23 75 97 74 97 0.92 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF304-204 - 617 2.9e-77 251.1 132.2 3 18 5.1 6.5e+03 -2.0 0.0 11 21 135 145 131 146 0.80 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF304-204 - 617 2.9e-77 251.1 132.2 4 18 0.0047 6 7.5 0.5 3 20 153 172 152 173 0.88 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF304-204 - 617 2.9e-77 251.1 132.2 5 18 0.0002 0.26 11.8 0.3 1 23 209 231 209 231 0.95 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF304-204 - 617 2.9e-77 251.1 132.2 6 18 3.9e-05 0.05 14.1 7.7 1 23 237 259 237 259 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF304-204 - 617 2.9e-77 251.1 132.2 7 18 1.5e-09 1.9e-06 28.0 0.6 1 23 265 287 265 287 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF304-204 - 617 2.9e-77 251.1 132.2 8 18 7.3e-09 9.4e-06 25.8 1.2 1 23 293 315 293 315 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF304-204 - 617 2.9e-77 251.1 132.2 9 18 7.9e-09 1e-05 25.7 2.0 1 23 321 343 321 343 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF304-204 - 617 2.9e-77 251.1 132.2 10 18 2e-08 2.6e-05 24.4 1.0 1 23 349 371 349 371 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF304-204 - 617 2.9e-77 251.1 132.2 11 18 9.4e-07 0.0012 19.2 2.0 1 23 377 399 377 399 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF304-204 - 617 2.9e-77 251.1 132.2 12 18 5.1e-05 0.065 13.7 0.6 1 23 405 427 405 427 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF304-204 - 617 2.9e-77 251.1 132.2 13 18 6.9e-09 8.8e-06 25.9 0.3 1 23 433 455 433 455 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF304-204 - 617 2.9e-77 251.1 132.2 14 18 1.6e-09 2.1e-06 27.9 0.8 1 23 461 483 461 483 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF304-204 - 617 2.9e-77 251.1 132.2 15 18 1.3e-08 1.7e-05 25.0 3.3 1 23 489 511 489 511 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF304-204 - 617 2.9e-77 251.1 132.2 16 18 1.3e-07 0.00017 21.9 0.8 1 23 517 539 517 539 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF304-204 - 617 2.9e-77 251.1 132.2 17 18 1.4e-08 1.8e-05 24.9 0.4 1 23 545 567 545 567 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF304-204 - 617 2.9e-77 251.1 132.2 18 18 4.4e-09 5.7e-06 26.5 1.3 1 23 573 595 573 595 0.98 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZNF304-204 - 617 2.1e-36 121.4 132.3 1 18 0.28 3.6e+02 2.4 0.3 1 23 47 69 47 70 0.89 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF304-204 - 617 2.1e-36 121.4 132.3 2 18 0.016 20 6.3 1.3 5 23 79 97 74 98 0.86 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF304-204 - 617 2.1e-36 121.4 132.3 3 18 2.9 3.7e+03 -0.7 0.0 1 20 125 144 122 147 0.83 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF304-204 - 617 2.1e-36 121.4 132.3 4 18 0.39 4.9e+02 2.0 0.5 5 19 157 171 152 173 0.85 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF304-204 - 617 2.1e-36 121.4 132.3 5 18 6.2e-05 0.079 13.8 0.3 1 23 209 231 209 232 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF304-204 - 617 2.1e-36 121.4 132.3 6 18 0.11 1.4e+02 3.7 6.7 1 23 237 259 237 260 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF304-204 - 617 2.1e-36 121.4 132.3 7 18 2.3e-06 0.0029 18.3 0.6 1 23 265 287 265 288 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF304-204 - 617 2.1e-36 121.4 132.3 8 18 0.00011 0.14 13.1 1.1 3 23 295 315 293 316 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF304-204 - 617 2.1e-36 121.4 132.3 9 18 5.2e-06 0.0067 17.2 1.4 1 23 321 343 321 344 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF304-204 - 617 2.1e-36 121.4 132.3 10 18 1.8e-05 0.023 15.5 1.4 1 23 349 371 349 372 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF304-204 - 617 2.1e-36 121.4 132.3 11 18 0.00033 0.42 11.6 1.7 1 23 377 399 377 400 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF304-204 - 617 2.1e-36 121.4 132.3 12 18 2.7e-05 0.035 15.0 0.7 1 23 405 427 405 428 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF304-204 - 617 2.1e-36 121.4 132.3 13 18 1.4e-06 0.0017 19.0 0.4 1 23 433 455 433 456 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF304-204 - 617 2.1e-36 121.4 132.3 14 18 0.0004 0.52 11.3 0.8 1 23 461 483 461 484 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF304-204 - 617 2.1e-36 121.4 132.3 15 18 0.0012 1.5 9.9 3.1 1 23 489 511 489 512 0.91 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF304-204 - 617 2.1e-36 121.4 132.3 16 18 4e-05 0.051 14.4 1.1 1 23 517 539 517 540 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF304-204 - 617 2.1e-36 121.4 132.3 17 18 0.00011 0.15 13.0 0.4 1 23 545 567 545 568 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF304-204 - 617 2.1e-36 121.4 132.3 18 18 3.7e-06 0.0047 17.6 1.5 1 23 573 595 573 596 0.96 C2H2-type zinc finger Zn-ribbon_8 PF09723.10 40 ZNF304-204 - 617 1.7e-13 50.4 63.5 1 10 0.00027 0.34 11.1 0.4 6 34 209 244 208 249 0.85 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF304-204 - 617 1.7e-13 50.4 63.5 2 10 6.5e-05 0.083 13.0 2.3 6 38 265 304 264 306 0.89 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF304-204 - 617 1.7e-13 50.4 63.5 3 10 0.00011 0.14 12.3 4.4 6 34 321 356 320 360 0.92 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF304-204 - 617 1.7e-13 50.4 63.5 4 10 0.042 53 4.0 5.4 6 33 349 383 348 384 0.80 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF304-204 - 617 1.7e-13 50.4 63.5 5 10 0.0098 13 6.0 3.0 6 34 377 412 376 414 0.83 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF304-204 - 617 1.7e-13 50.4 63.5 6 10 0.00074 0.95 9.6 4.7 6 38 405 444 404 447 0.84 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF304-204 - 617 1.7e-13 50.4 63.5 7 10 0.00049 0.63 10.2 5.5 6 34 433 468 432 471 0.93 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF304-204 - 617 1.7e-13 50.4 63.5 8 10 0.0019 2.4 8.3 7.7 6 34 461 496 460 499 0.94 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF304-204 - 617 1.7e-13 50.4 63.5 9 10 0.00014 0.18 12.0 3.1 6 34 489 524 487 527 0.91 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF304-204 - 617 1.7e-13 50.4 63.5 10 10 1.3e-05 0.017 15.2 1.3 6 38 545 584 544 585 0.89 Zinc ribbon domain zf-C2H2_jaz PF12171.8 27 ZNF304-204 - 617 1.6e-09 37.8 77.0 1 15 8.3 1.1e+04 -3.1 0.3 4 8 49 53 47 53 0.85 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF304-204 - 617 1.6e-09 37.8 77.0 2 15 9.8 1.3e+04 -3.3 0.5 6 22 79 95 79 97 0.68 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF304-204 - 617 1.6e-09 37.8 77.0 3 15 0.019 24 5.4 0.0 2 22 209 229 208 229 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF304-204 - 617 1.6e-09 37.8 77.0 4 15 0.046 59 4.1 3.4 2 22 237 257 236 257 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF304-204 - 617 1.6e-09 37.8 77.0 5 15 0.0016 2.1 8.7 0.3 2 22 265 285 264 285 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF304-204 - 617 1.6e-09 37.8 77.0 6 15 0.0068 8.6 6.8 0.2 2 22 293 313 292 313 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF304-204 - 617 1.6e-09 37.8 77.0 7 15 0.066 84 3.6 0.2 2 22 321 341 320 341 0.89 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF304-204 - 617 1.6e-09 37.8 77.0 8 15 0.012 15 6.0 0.2 2 22 349 369 348 369 0.90 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF304-204 - 617 1.6e-09 37.8 77.0 9 15 0.00018 0.24 11.8 0.2 2 21 377 396 376 397 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF304-204 - 617 1.6e-09 37.8 77.0 10 15 0.00045 0.58 10.5 0.1 2 22 433 453 432 453 0.95 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF304-204 - 617 1.6e-09 37.8 77.0 11 15 0.0035 4.5 7.7 0.1 2 22 461 481 460 481 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF304-204 - 617 1.6e-09 37.8 77.0 12 15 0.21 2.6e+02 2.0 1.1 2 22 489 509 488 509 0.90 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF304-204 - 617 1.6e-09 37.8 77.0 13 15 0.00063 0.8 10.1 0.1 2 22 517 537 516 537 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF304-204 - 617 1.6e-09 37.8 77.0 14 15 0.016 20 5.6 0.0 2 21 545 564 544 565 0.85 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF304-204 - 617 1.6e-09 37.8 77.0 15 15 0.013 16 5.9 0.1 2 22 573 593 572 593 0.93 Zinc-finger double-stranded RNA-binding zf_UBZ PF18439.1 32 ZNF304-204 - 617 1.2e-08 34.4 78.1 1 16 3.3 4.2e+03 -2.6 0.5 4 20 48 65 46 66 0.70 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF304-204 - 617 1.2e-08 34.4 78.1 2 16 0.48 6.2e+02 0.1 0.4 7 21 157 172 156 172 0.90 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF304-204 - 617 1.2e-08 34.4 78.1 3 16 4.8 6.1e+03 -3.1 0.1 3 14 209 220 209 225 0.81 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF304-204 - 617 1.2e-08 34.4 78.1 4 16 0.029 37 4.0 0.6 3 13 237 247 236 259 0.81 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF304-204 - 617 1.2e-08 34.4 78.1 5 16 0.00037 0.47 10.1 0.2 2 16 264 279 263 284 0.78 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF304-204 - 617 1.2e-08 34.4 78.1 6 16 0.0035 4.5 7.0 0.2 2 16 292 307 291 312 0.76 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF304-204 - 617 1.2e-08 34.4 78.1 7 16 0.0058 7.4 6.3 0.1 3 21 321 340 319 344 0.81 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF304-204 - 617 1.2e-08 34.4 78.1 8 16 0.00061 0.78 9.4 0.6 3 20 349 367 347 367 0.89 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF304-204 - 617 1.2e-08 34.4 78.1 9 16 0.042 54 3.5 0.2 3 15 377 389 375 396 0.81 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF304-204 - 617 1.2e-08 34.4 78.1 10 16 0.0026 3.3 7.4 0.4 2 12 404 414 403 424 0.81 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF304-204 - 617 1.2e-08 34.4 78.1 11 16 0.003 3.9 7.2 0.1 3 16 433 447 431 452 0.77 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF304-204 - 617 1.2e-08 34.4 78.1 12 16 0.01 13 5.5 0.1 3 15 461 473 459 480 0.84 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF304-204 - 617 1.2e-08 34.4 78.1 13 16 0.01 13 5.5 0.8 3 15 489 501 487 508 0.84 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF304-204 - 617 1.2e-08 34.4 78.1 14 16 0.0034 4.3 7.0 0.1 3 15 517 529 515 536 0.73 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF304-204 - 617 1.2e-08 34.4 78.1 15 16 0.0056 7.2 6.3 0.1 3 13 545 555 543 559 0.87 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF304-204 - 617 1.2e-08 34.4 78.1 16 16 0.0037 4.8 6.9 0.1 3 13 573 583 571 591 0.83 Ubiquitin-Binding Zinc Finger # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF304-204.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF304-204.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF304-204.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF304-204.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF304-204.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:03:43 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZNF311-203 - 666 4.6e-95 308.2 107.1 1 14 0.097 1e+02 3.6 0.3 12 25 244 257 233 257 0.89 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF311-203 - 666 4.6e-95 308.2 107.1 2 14 1.2e-08 1.2e-05 25.4 0.2 2 26 262 286 261 286 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF311-203 - 666 4.6e-95 308.2 107.1 3 14 3.4e-10 3.6e-07 30.3 0.1 2 26 290 314 289 314 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF311-203 - 666 4.6e-95 308.2 107.1 4 14 5.3e-09 5.6e-06 26.5 5.3 4 26 320 342 317 342 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF311-203 - 666 4.6e-95 308.2 107.1 5 14 1.6e-06 0.0017 18.7 2.1 5 24 349 368 348 369 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF311-203 - 666 4.6e-95 308.2 107.1 6 14 7e-10 7.4e-07 29.3 0.2 2 25 374 397 373 397 0.88 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF311-203 - 666 4.6e-95 308.2 107.1 7 14 2.1e-12 2.3e-09 37.3 0.3 1 25 401 425 401 426 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF311-203 - 666 4.6e-95 308.2 107.1 8 14 1.1e-07 0.00011 22.4 2.1 1 25 429 453 429 453 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF311-203 - 666 4.6e-95 308.2 107.1 9 14 4.3e-09 4.6e-06 26.8 3.4 2 26 458 482 457 482 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF311-203 - 666 4.6e-95 308.2 107.1 10 14 3.5e-10 3.7e-07 30.3 1.4 3 24 487 508 486 509 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF311-203 - 666 4.6e-95 308.2 107.1 11 14 4.3e-10 4.5e-07 30.0 0.3 3 25 515 537 514 537 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF311-203 - 666 4.6e-95 308.2 107.1 12 14 9.3e-10 9.8e-07 28.9 3.6 1 26 541 566 541 566 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF311-203 - 666 4.6e-95 308.2 107.1 13 14 1.7e-10 1.8e-07 31.3 0.5 2 24 570 592 569 594 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF311-203 - 666 4.6e-95 308.2 107.1 14 14 3.9e-11 4.1e-08 33.3 0.3 4 24 600 620 597 621 0.91 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZNF311-203 - 666 9.4e-58 189.6 118.1 1 14 0.0021 2.2 8.9 0.9 1 23 247 269 247 269 0.95 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF311-203 - 666 9.4e-58 189.6 118.1 2 14 9.2e-07 0.00097 19.5 1.0 1 23 275 297 275 297 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF311-203 - 666 9.4e-58 189.6 118.1 3 14 4.2e-07 0.00044 20.6 3.8 1 23 303 325 303 325 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF311-203 - 666 9.4e-58 189.6 118.1 4 14 1.8e-05 0.019 15.4 4.0 1 23 331 353 331 353 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF311-203 - 666 9.4e-58 189.6 118.1 5 14 0.00084 0.89 10.1 4.3 1 23 359 381 359 381 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF311-203 - 666 9.4e-58 189.6 118.1 6 14 2.2e-09 2.4e-06 27.7 0.1 1 23 387 409 387 409 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF311-203 - 666 9.4e-58 189.6 118.1 7 14 9.5e-09 1e-05 25.7 1.2 1 23 415 437 415 437 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF311-203 - 666 9.4e-58 189.6 118.1 8 14 2.1e-06 0.0022 18.3 0.2 3 23 445 465 443 465 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF311-203 - 666 9.4e-58 189.6 118.1 9 14 0.00012 0.13 12.8 4.3 1 23 471 493 471 493 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF311-203 - 666 9.4e-58 189.6 118.1 10 14 5e-07 0.00053 20.3 4.8 1 23 499 521 499 521 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF311-203 - 666 9.4e-58 189.6 118.1 11 14 1.2e-08 1.2e-05 25.4 0.6 1 23 527 549 527 549 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF311-203 - 666 9.4e-58 189.6 118.1 12 14 0.00011 0.12 12.9 4.9 1 23 555 577 555 577 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF311-203 - 666 9.4e-58 189.6 118.1 13 14 2.7e-06 0.0029 18.0 0.2 1 23 583 605 583 605 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF311-203 - 666 9.4e-58 189.6 118.1 14 14 2.5e-07 0.00026 21.3 0.5 1 23 611 634 611 634 0.98 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZNF311-203 - 666 8.7e-34 113.3 111.0 1 14 0.049 52 5.1 1.2 1 23 247 269 247 270 0.85 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF311-203 - 666 8.7e-34 113.3 111.0 2 14 8.1e-05 0.085 13.7 0.7 1 23 275 297 275 298 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF311-203 - 666 8.7e-34 113.3 111.0 3 14 6.1e-07 0.00065 20.3 3.2 1 23 303 325 303 326 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF311-203 - 666 8.7e-34 113.3 111.0 4 14 0.00063 0.66 11.0 2.8 1 23 331 353 331 354 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF311-203 - 666 8.7e-34 113.3 111.0 5 14 0.047 49 5.1 3.0 1 19 359 377 359 381 0.91 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF311-203 - 666 8.7e-34 113.3 111.0 6 14 3.1e-06 0.0033 18.1 0.1 1 23 387 409 387 410 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF311-203 - 666 8.7e-34 113.3 111.0 7 14 3.3e-06 0.0035 18.0 1.0 1 23 415 437 415 438 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF311-203 - 666 8.7e-34 113.3 111.0 8 14 1.6e-05 0.017 15.9 0.2 2 23 444 465 443 466 0.89 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF311-203 - 666 8.7e-34 113.3 111.0 9 14 0.0082 8.7 7.5 4.1 1 23 471 493 471 494 0.81 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF311-203 - 666 8.7e-34 113.3 111.0 10 14 0.00016 0.17 12.8 3.2 1 23 499 521 499 522 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF311-203 - 666 8.7e-34 113.3 111.0 11 14 1.4e-05 0.015 16.1 0.4 1 23 527 549 527 550 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF311-203 - 666 8.7e-34 113.3 111.0 12 14 0.0061 6.4 7.9 4.2 1 23 555 577 555 578 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF311-203 - 666 8.7e-34 113.3 111.0 13 14 0.00012 0.12 13.2 0.2 1 23 583 605 583 606 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF311-203 - 666 8.7e-34 113.3 111.0 14 14 4.7e-05 0.049 14.5 0.5 1 24 611 634 611 634 0.96 C2H2-type zinc finger KRAB PF01352.27 42 ZNF311-203 - 666 6.4e-24 83.3 0.3 1 1 1.2e-26 1.3e-23 82.4 0.3 1 42 63 104 63 104 0.99 KRAB box zf-C2H2_6 PF13912.6 27 ZNF311-203 - 666 4.9e-20 71.1 104.5 1 15 6.6 6.9e+03 -2.8 0.1 5 10 235 240 235 241 0.83 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF311-203 - 666 4.9e-20 71.1 104.5 2 15 0.076 80 3.4 0.1 2 12 247 257 246 258 0.92 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF311-203 - 666 4.9e-20 71.1 104.5 3 15 2.8e-05 0.029 14.4 0.4 2 24 275 297 275 300 0.91 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF311-203 - 666 4.9e-20 71.1 104.5 4 15 8e-07 0.00084 19.3 3.9 2 25 303 326 303 328 0.95 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF311-203 - 666 4.9e-20 71.1 104.5 5 15 0.042 45 4.2 1.0 2 14 331 343 331 350 0.82 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF311-203 - 666 4.9e-20 71.1 104.5 6 15 0.12 1.3e+02 2.7 2.8 2 12 359 369 359 377 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF311-203 - 666 4.9e-20 71.1 104.5 7 15 0.0025 2.6 8.1 0.3 2 12 387 397 387 409 0.79 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF311-203 - 666 4.9e-20 71.1 104.5 8 15 0.0001 0.11 12.6 1.3 2 24 415 437 415 440 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF311-203 - 666 4.9e-20 71.1 104.5 9 15 0.00088 0.93 9.6 0.5 1 24 442 465 442 468 0.89 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF311-203 - 666 4.9e-20 71.1 104.5 10 15 0.0048 5.1 7.2 0.6 1 12 470 481 470 482 0.91 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF311-203 - 666 4.9e-20 71.1 104.5 11 15 0.19 2e+02 2.1 0.5 2 12 499 509 499 509 0.91 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF311-203 - 666 4.9e-20 71.1 104.5 12 15 0.0055 5.8 7.0 0.7 2 24 527 549 527 552 0.88 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF311-203 - 666 4.9e-20 71.1 104.5 13 15 0.031 33 4.6 3.5 2 24 555 577 555 580 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF311-203 - 666 4.9e-20 71.1 104.5 14 15 1.2e-07 0.00012 21.9 0.4 2 24 583 605 583 608 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF311-203 - 666 4.9e-20 71.1 104.5 15 15 9.2e-07 0.00097 19.1 1.4 2 26 611 635 611 636 0.93 C2H2-type zinc finger zf-C2H2_jaz PF12171.8 27 ZNF311-203 - 666 3.1e-11 43.2 51.2 1 13 3 3.2e+03 -1.4 0.5 3 21 248 266 247 267 0.79 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF311-203 - 666 3.1e-11 43.2 51.2 2 13 0.00093 0.98 9.8 0.1 2 20 275 293 274 294 0.91 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF311-203 - 666 3.1e-11 43.2 51.2 3 13 0.00032 0.34 11.2 0.9 2 24 303 325 302 327 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF311-203 - 666 3.1e-11 43.2 51.2 4 13 0.19 2e+02 2.4 0.4 2 16 331 345 330 350 0.84 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF311-203 - 666 3.1e-11 43.2 51.2 5 13 4.3e-05 0.046 14.0 0.0 2 22 387 407 386 407 0.95 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF311-203 - 666 3.1e-11 43.2 51.2 6 13 0.094 99 3.4 0.0 2 22 415 435 414 435 0.91 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF311-203 - 666 3.1e-11 43.2 51.2 7 13 1 1.1e+03 0.1 0.0 4 20 445 461 443 463 0.82 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF311-203 - 666 3.1e-11 43.2 51.2 8 13 0.25 2.7e+02 2.0 1.2 2 13 471 482 470 493 0.77 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF311-203 - 666 3.1e-11 43.2 51.2 9 13 1.5 1.6e+03 -0.5 1.1 4 15 501 512 498 519 0.77 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF311-203 - 666 3.1e-11 43.2 51.2 10 13 0.00033 0.34 11.2 0.0 2 21 527 546 526 547 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF311-203 - 666 3.1e-11 43.2 51.2 11 13 0.00061 0.65 10.4 0.3 2 22 555 575 554 575 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF311-203 - 666 3.1e-11 43.2 51.2 12 13 4.5 4.7e+03 -1.9 0.0 2 20 583 601 582 603 0.72 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF311-203 - 666 3.1e-11 43.2 51.2 13 13 0.012 13 6.2 0.0 2 22 611 631 610 631 0.90 Zinc-finger double-stranded RNA-binding Zn-ribbon_8 PF09723.10 40 ZNF311-203 - 666 1.7e-09 37.6 80.6 1 10 0.0004 0.42 10.8 1.2 7 35 248 283 247 289 0.79 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF311-203 - 666 1.7e-09 37.6 80.6 2 10 0.0039 4.1 7.6 5.4 6 35 303 339 302 346 0.79 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF311-203 - 666 1.7e-09 37.6 80.6 3 10 0.021 22 5.3 8.2 6 34 359 394 358 397 0.83 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF311-203 - 666 1.7e-09 37.6 80.6 4 10 0.01 11 6.2 1.1 6 16 387 397 386 409 0.87 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF311-203 - 666 1.7e-09 37.6 80.6 5 10 5.9e-06 0.0063 16.6 1.8 6 35 415 451 414 456 0.86 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF311-203 - 666 1.7e-09 37.6 80.6 6 10 0.0028 3 8.0 1.9 6 19 471 484 469 495 0.78 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF311-203 - 666 1.7e-09 37.6 80.6 7 10 7.8e-05 0.083 13.0 4.5 6 34 499 534 498 537 0.92 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF311-203 - 666 1.7e-09 37.6 80.6 8 10 0.00014 0.14 12.3 1.1 6 33 527 561 526 565 0.88 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF311-203 - 666 1.7e-09 37.6 80.6 9 10 0.0082 8.7 6.6 6.3 6 35 583 619 581 621 0.78 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF311-203 - 666 1.7e-09 37.6 80.6 10 10 0.0051 5.3 7.2 0.9 6 17 611 622 610 631 0.86 Zinc ribbon domain zf-C2H2_11 PF16622.5 29 ZNF311-203 - 666 3e-09 36.5 72.3 1 14 0.066 69 3.3 0.1 6 18 248 260 246 269 0.75 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF311-203 - 666 3e-09 36.5 72.3 2 14 0.024 25 4.7 0.3 7 26 277 296 273 297 0.92 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF311-203 - 666 3e-09 36.5 72.3 3 14 0.0006 0.63 9.9 1.3 6 23 304 321 301 323 0.93 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF311-203 - 666 3e-09 36.5 72.3 4 14 0.27 2.8e+02 1.4 0.4 5 14 331 340 328 352 0.84 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF311-203 - 666 3e-09 36.5 72.3 5 14 0.3 3.2e+02 1.2 1.3 5 26 359 380 356 381 0.88 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF311-203 - 666 3e-09 36.5 72.3 6 14 0.0008 0.85 9.4 0.0 6 26 388 408 385 409 0.94 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF311-203 - 666 3e-09 36.5 72.3 7 14 0.00016 0.17 11.7 0.6 6 26 416 436 414 437 0.93 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF311-203 - 666 3e-09 36.5 72.3 8 14 0.00012 0.13 12.1 0.1 7 26 445 464 443 465 0.96 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF311-203 - 666 3e-09 36.5 72.3 9 14 0.22 2.3e+02 1.6 0.2 5 14 471 480 467 481 0.84 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF311-203 - 666 3e-09 36.5 72.3 10 14 0.016 16 5.3 1.2 5 24 499 518 496 521 0.75 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF311-203 - 666 3e-09 36.5 72.3 11 14 4.4e-05 0.047 13.5 0.1 5 26 527 548 524 549 0.94 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF311-203 - 666 3e-09 36.5 72.3 12 14 0.023 24 4.8 1.3 5 26 555 576 552 577 0.93 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF311-203 - 666 3e-09 36.5 72.3 13 14 0.72 7.6e+02 -0.0 0.1 7 14 585 592 582 598 0.87 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF311-203 - 666 3e-09 36.5 72.3 14 14 0.78 8.2e+02 -0.1 0.1 6 14 612 620 610 629 0.79 zinc-finger C2H2-type # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF311-203.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF311-203.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF311-203.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF311-203.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF311-203.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:03:43 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZNF311-204 - 574 4.2e-96 311.4 107.1 1 14 0.086 86 3.8 0.3 12 25 152 165 141 165 0.89 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF311-204 - 574 4.2e-96 311.4 107.1 2 14 1e-08 1e-05 25.7 0.2 2 26 170 194 169 194 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF311-204 - 574 4.2e-96 311.4 107.1 3 14 3e-10 3e-07 30.6 0.1 2 26 198 222 197 222 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF311-204 - 574 4.2e-96 311.4 107.1 4 14 4.7e-09 4.7e-06 26.8 5.3 4 26 228 250 225 250 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF311-204 - 574 4.2e-96 311.4 107.1 5 14 1.5e-06 0.0015 18.9 2.1 5 24 257 276 256 277 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF311-204 - 574 4.2e-96 311.4 107.1 6 14 6.2e-10 6.2e-07 29.6 0.2 2 25 282 305 281 305 0.88 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF311-204 - 574 4.2e-96 311.4 107.1 7 14 1.9e-12 1.9e-09 37.5 0.3 1 25 309 333 309 334 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF311-204 - 574 4.2e-96 311.4 107.1 8 14 9.5e-08 9.5e-05 22.7 2.1 1 25 337 361 337 361 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF311-204 - 574 4.2e-96 311.4 107.1 9 14 3.8e-09 3.8e-06 27.1 3.4 2 26 366 390 365 390 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF311-204 - 574 4.2e-96 311.4 107.1 10 14 3.1e-10 3.1e-07 30.5 1.4 3 24 395 416 394 417 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF311-204 - 574 4.2e-96 311.4 107.1 11 14 3.8e-10 3.8e-07 30.2 0.3 3 25 423 445 422 445 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF311-204 - 574 4.2e-96 311.4 107.1 12 14 8.2e-10 8.2e-07 29.2 3.6 1 26 449 474 449 474 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF311-204 - 574 4.2e-96 311.4 107.1 13 14 1.5e-10 1.5e-07 31.5 0.5 2 24 478 500 477 502 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF311-204 - 574 4.2e-96 311.4 107.1 14 14 3.5e-11 3.4e-08 33.5 0.3 4 24 508 528 505 529 0.91 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZNF311-204 - 574 8.6e-59 192.9 118.1 1 14 0.0018 1.8 9.2 0.9 1 23 155 177 155 177 0.95 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF311-204 - 574 8.6e-59 192.9 118.1 2 14 8.2e-07 0.00081 19.7 1.0 1 23 183 205 183 205 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF311-204 - 574 8.6e-59 192.9 118.1 3 14 3.7e-07 0.00037 20.8 3.8 1 23 211 233 211 233 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF311-204 - 574 8.6e-59 192.9 118.1 4 14 1.6e-05 0.016 15.6 4.0 1 23 239 261 239 261 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF311-204 - 574 8.6e-59 192.9 118.1 5 14 0.00075 0.74 10.4 4.3 1 23 267 289 267 289 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF311-204 - 574 8.6e-59 192.9 118.1 6 14 2e-09 2e-06 27.9 0.1 1 23 295 317 295 317 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF311-204 - 574 8.6e-59 192.9 118.1 7 14 8.4e-09 8.4e-06 26.0 1.2 1 23 323 345 323 345 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF311-204 - 574 8.6e-59 192.9 118.1 8 14 1.9e-06 0.0019 18.6 0.2 3 23 353 373 351 373 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF311-204 - 574 8.6e-59 192.9 118.1 9 14 0.00011 0.11 13.0 4.3 1 23 379 401 379 401 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF311-204 - 574 8.6e-59 192.9 118.1 10 14 4.5e-07 0.00044 20.5 4.8 1 23 407 429 407 429 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF311-204 - 574 8.6e-59 192.9 118.1 11 14 1e-08 1e-05 25.7 0.6 1 23 435 457 435 457 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF311-204 - 574 8.6e-59 192.9 118.1 12 14 0.0001 0.1 13.1 4.9 1 23 463 485 463 485 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF311-204 - 574 8.6e-59 192.9 118.1 13 14 2.4e-06 0.0024 18.2 0.2 1 23 491 513 491 513 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF311-204 - 574 8.6e-59 192.9 118.1 14 14 2.2e-07 0.00022 21.5 0.5 1 23 519 542 519 542 0.98 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZNF311-204 - 574 8e-35 116.5 111.0 1 14 0.043 43 5.3 1.2 1 23 155 177 155 178 0.85 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF311-204 - 574 8e-35 116.5 111.0 2 14 7.2e-05 0.072 14.0 0.7 1 23 183 205 183 206 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF311-204 - 574 8e-35 116.5 111.0 3 14 5.4e-07 0.00054 20.6 3.2 1 23 211 233 211 234 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF311-204 - 574 8e-35 116.5 111.0 4 14 0.00056 0.55 11.2 2.8 1 23 239 261 239 262 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF311-204 - 574 8e-35 116.5 111.0 5 14 0.042 41 5.4 3.0 1 19 267 285 267 289 0.91 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF311-204 - 574 8e-35 116.5 111.0 6 14 2.8e-06 0.0028 18.4 0.1 1 23 295 317 295 318 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF311-204 - 574 8e-35 116.5 111.0 7 14 2.9e-06 0.0029 18.3 1.0 1 23 323 345 323 346 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF311-204 - 574 8e-35 116.5 111.0 8 14 1.4e-05 0.014 16.2 0.2 2 23 352 373 351 374 0.89 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF311-204 - 574 8e-35 116.5 111.0 9 14 0.0073 7.3 7.7 4.1 1 23 379 401 379 402 0.81 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF311-204 - 574 8e-35 116.5 111.0 10 14 0.00014 0.14 13.1 3.2 1 23 407 429 407 430 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF311-204 - 574 8e-35 116.5 111.0 11 14 1.3e-05 0.013 16.3 0.4 1 23 435 457 435 458 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF311-204 - 574 8e-35 116.5 111.0 12 14 0.0054 5.4 8.1 4.2 1 23 463 485 463 486 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF311-204 - 574 8e-35 116.5 111.0 13 14 0.0001 0.1 13.5 0.2 1 23 491 513 491 514 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF311-204 - 574 8e-35 116.5 111.0 14 14 4.2e-05 0.041 14.7 0.5 1 24 519 542 519 542 0.96 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF311-204 - 574 4.3e-21 74.4 104.5 1 15 5.9 5.9e+03 -2.6 0.1 5 10 143 148 143 149 0.83 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF311-204 - 574 4.3e-21 74.4 104.5 2 15 0.068 68 3.6 0.1 2 12 155 165 154 166 0.92 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF311-204 - 574 4.3e-21 74.4 104.5 3 15 2.5e-05 0.024 14.6 0.4 2 24 183 205 183 208 0.91 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF311-204 - 574 4.3e-21 74.4 104.5 4 15 7.1e-07 0.00071 19.5 3.9 2 25 211 234 211 236 0.95 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF311-204 - 574 4.3e-21 74.4 104.5 5 15 0.038 38 4.4 1.0 2 14 239 251 239 258 0.82 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF311-204 - 574 4.3e-21 74.4 104.5 6 15 0.11 1.1e+02 3.0 2.8 2 12 267 277 267 285 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF311-204 - 574 4.3e-21 74.4 104.5 7 15 0.0022 2.2 8.4 0.3 2 12 295 305 295 317 0.79 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF311-204 - 574 4.3e-21 74.4 104.5 8 15 9e-05 0.09 12.8 1.3 2 24 323 345 323 348 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF311-204 - 574 4.3e-21 74.4 104.5 9 15 0.00079 0.78 9.8 0.5 1 24 350 373 350 376 0.89 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF311-204 - 574 4.3e-21 74.4 104.5 10 15 0.0043 4.3 7.4 0.6 1 12 378 389 378 390 0.91 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF311-204 - 574 4.3e-21 74.4 104.5 11 15 0.17 1.7e+02 2.3 0.5 2 12 407 417 407 417 0.91 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF311-204 - 574 4.3e-21 74.4 104.5 12 15 0.0049 4.9 7.3 0.7 2 24 435 457 435 460 0.88 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF311-204 - 574 4.3e-21 74.4 104.5 13 15 0.028 28 4.9 3.5 2 24 463 485 463 488 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF311-204 - 574 4.3e-21 74.4 104.5 14 15 1e-07 0.0001 22.2 0.4 2 24 491 513 491 516 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF311-204 - 574 4.3e-21 74.4 104.5 15 15 8.2e-07 0.00082 19.3 1.4 2 26 519 543 519 544 0.93 C2H2-type zinc finger zf-C2H2_jaz PF12171.8 27 ZNF311-204 - 574 4.1e-12 46.0 51.2 1 13 2.7 2.7e+03 -1.2 0.5 3 21 156 174 155 175 0.79 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF311-204 - 574 4.1e-12 46.0 51.2 2 13 0.00083 0.82 10.0 0.1 2 20 183 201 182 202 0.91 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF311-204 - 574 4.1e-12 46.0 51.2 3 13 0.00029 0.29 11.5 0.9 2 24 211 233 210 235 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF311-204 - 574 4.1e-12 46.0 51.2 4 13 0.17 1.7e+02 2.7 0.4 2 16 239 253 238 258 0.84 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF311-204 - 574 4.1e-12 46.0 51.2 5 13 3.9e-05 0.038 14.3 0.0 2 22 295 315 294 315 0.95 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF311-204 - 574 4.1e-12 46.0 51.2 6 13 0.084 83 3.6 0.0 2 22 323 343 322 343 0.91 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF311-204 - 574 4.1e-12 46.0 51.2 7 13 0.91 9e+02 0.3 0.0 4 20 353 369 351 371 0.82 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF311-204 - 574 4.1e-12 46.0 51.2 8 13 0.23 2.3e+02 2.3 1.2 2 13 379 390 378 401 0.77 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF311-204 - 574 4.1e-12 46.0 51.2 9 13 1.4 1.4e+03 -0.2 1.1 4 15 409 420 406 427 0.77 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF311-204 - 574 4.1e-12 46.0 51.2 10 13 0.00029 0.29 11.5 0.0 2 21 435 454 434 455 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF311-204 - 574 4.1e-12 46.0 51.2 11 13 0.00055 0.54 10.6 0.3 2 22 463 483 462 483 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF311-204 - 574 4.1e-12 46.0 51.2 12 13 4 4e+03 -1.7 0.0 2 20 491 509 490 511 0.72 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF311-204 - 574 4.1e-12 46.0 51.2 13 13 0.011 11 6.5 0.0 2 22 519 539 518 539 0.90 Zinc-finger double-stranded RNA-binding Zn-ribbon_8 PF09723.10 40 ZNF311-204 - 574 2.9e-10 40.1 80.5 1 11 0.00026 0.26 11.4 0.9 7 35 156 191 155 198 0.79 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF311-204 - 574 2.9e-10 40.1 80.5 2 11 0.0029 2.9 8.1 5.1 6 35 211 247 210 254 0.79 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF311-204 - 574 2.9e-10 40.1 80.5 3 11 0.031 30 4.8 8.9 6 34 267 302 266 305 0.83 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF311-204 - 574 2.9e-10 40.1 80.5 4 11 0.0085 8.4 6.6 1.0 6 16 295 305 294 320 0.87 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF311-204 - 574 2.9e-10 40.1 80.5 5 11 5.2e-06 0.0052 16.9 1.8 6 35 323 359 322 364 0.86 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF311-204 - 574 2.9e-10 40.1 80.5 6 11 0.0025 2.5 8.3 1.9 6 19 379 392 377 403 0.78 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF311-204 - 574 2.9e-10 40.1 80.5 7 11 8.7e-05 0.087 13.0 4.9 6 34 407 442 406 445 0.92 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF311-204 - 574 2.9e-10 40.1 80.5 8 11 0.00011 0.11 12.6 1.1 6 33 435 469 434 474 0.88 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF311-204 - 574 2.9e-10 40.1 80.5 9 11 0.034 34 4.7 3.9 7 36 464 500 462 502 0.76 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF311-204 - 574 2.9e-10 40.1 80.5 10 11 0.0062 6.1 7.0 6.0 6 35 491 527 489 529 0.78 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF311-204 - 574 2.9e-10 40.1 80.5 11 11 0.0042 4.2 7.6 0.8 6 17 519 530 517 540 0.86 Zinc ribbon domain zf-C2H2_11 PF16622.5 29 ZNF311-204 - 574 3.6e-10 39.4 72.3 1 14 0.059 58 3.6 0.1 6 18 156 168 154 177 0.75 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF311-204 - 574 3.6e-10 39.4 72.3 2 14 0.021 21 5.0 0.3 7 26 185 204 181 205 0.92 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF311-204 - 574 3.6e-10 39.4 72.3 3 14 0.00053 0.53 10.1 1.3 6 23 212 229 209 231 0.93 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF311-204 - 574 3.6e-10 39.4 72.3 4 14 0.24 2.4e+02 1.6 0.4 5 14 239 248 236 260 0.84 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF311-204 - 574 3.6e-10 39.4 72.3 5 14 0.27 2.7e+02 1.4 1.3 5 26 267 288 264 289 0.88 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF311-204 - 574 3.6e-10 39.4 72.3 6 14 0.00072 0.71 9.7 0.0 6 26 296 316 293 317 0.94 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF311-204 - 574 3.6e-10 39.4 72.3 7 14 0.00014 0.14 11.9 0.6 6 26 324 344 322 345 0.93 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF311-204 - 574 3.6e-10 39.4 72.3 8 14 0.00011 0.11 12.3 0.1 7 26 353 372 351 373 0.96 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF311-204 - 574 3.6e-10 39.4 72.3 9 14 0.2 2e+02 1.9 0.2 5 14 379 388 375 389 0.84 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF311-204 - 574 3.6e-10 39.4 72.3 10 14 0.014 14 5.6 1.2 5 24 407 426 404 429 0.75 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF311-204 - 574 3.6e-10 39.4 72.3 11 14 3.9e-05 0.039 13.7 0.1 5 26 435 456 432 457 0.94 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF311-204 - 574 3.6e-10 39.4 72.3 12 14 0.021 21 5.0 1.3 5 26 463 484 460 485 0.93 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF311-204 - 574 3.6e-10 39.4 72.3 13 14 0.65 6.5e+02 0.2 0.1 7 14 493 500 490 506 0.87 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF311-204 - 574 3.6e-10 39.4 72.3 14 14 0.7 6.9e+02 0.1 0.1 6 14 520 528 518 537 0.79 zinc-finger C2H2-type # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF311-204.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF311-204.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF311-204.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF311-204.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF311-204.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:03:44 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZNF316-201 - 1004 5.9e-86 279.4 93.0 1 16 0.14 1.2e+02 3.3 0.1 16 24 346 354 335 356 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF316-201 - 1004 5.9e-86 279.4 93.0 2 16 2.7e-05 0.024 15.1 0.3 2 25 360 383 359 384 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF316-201 - 1004 5.9e-86 279.4 93.0 3 16 1.8e-10 1.6e-07 31.4 1.4 2 25 388 411 387 412 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF316-201 - 1004 5.9e-86 279.4 93.0 4 16 6.5e-09 5.8e-06 26.5 0.4 1 25 415 439 415 440 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF316-201 - 1004 5.9e-86 279.4 93.0 5 16 1.5e-09 1.3e-06 28.5 1.4 2 25 444 467 443 468 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF316-201 - 1004 5.9e-86 279.4 93.0 6 16 1.9e-08 1.7e-05 25.0 0.4 1 24 471 494 471 495 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF316-201 - 1004 5.9e-86 279.4 93.0 7 16 0.068 61 4.3 0.0 13 25 689 701 687 702 0.81 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF316-201 - 1004 5.9e-86 279.4 93.0 8 16 4.1e-08 3.7e-05 24.0 0.6 1 25 705 729 705 730 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF316-201 - 1004 5.9e-86 279.4 93.0 9 16 1.5e-10 1.4e-07 31.6 1.2 1 25 733 757 733 758 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF316-201 - 1004 5.9e-86 279.4 93.0 10 16 6.6e-08 5.9e-05 23.3 0.1 1 25 761 785 761 786 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF316-201 - 1004 5.9e-86 279.4 93.0 11 16 4.5e-06 0.0041 17.5 0.2 1 25 789 813 789 814 0.89 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF316-201 - 1004 5.9e-86 279.4 93.0 12 16 3.8e-07 0.00034 20.9 0.6 1 26 817 842 817 842 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF316-201 - 1004 5.9e-86 279.4 93.0 13 16 1.5e-09 1.3e-06 28.5 0.6 2 25 846 869 845 870 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF316-201 - 1004 5.9e-86 279.4 93.0 14 16 5.3e-11 4.7e-08 33.1 0.7 1 25 873 897 873 898 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF316-201 - 1004 5.9e-86 279.4 93.0 15 16 1.1e-08 9.6e-06 25.8 0.2 2 25 902 925 902 926 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF316-201 - 1004 5.9e-86 279.4 93.0 16 16 0.78 7e+02 0.9 0.8 2 11 930 939 929 942 0.83 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZNF316-201 - 1004 4.9e-77 250.3 102.8 1 15 3.9e-07 0.00035 20.9 2.0 2 23 346 367 345 367 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF316-201 - 1004 4.9e-77 250.3 102.8 2 15 4.5e-07 0.0004 20.7 0.6 3 23 375 395 373 395 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF316-201 - 1004 4.9e-77 250.3 102.8 3 15 1.1e-08 9.6e-06 25.8 1.9 1 23 401 423 401 423 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF316-201 - 1004 4.9e-77 250.3 102.8 4 15 2.4e-06 0.0021 18.4 0.5 1 23 429 451 429 451 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF316-201 - 1004 4.9e-77 250.3 102.8 5 15 1e-08 9e-06 25.9 0.7 1 23 457 479 457 479 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF316-201 - 1004 4.9e-77 250.3 102.8 6 15 8.9e-05 0.08 13.4 1.5 1 21 485 505 485 506 0.94 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF316-201 - 1004 4.9e-77 250.3 102.8 7 15 2.4e-07 0.00021 21.5 0.2 3 23 693 713 691 713 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF316-201 - 1004 4.9e-77 250.3 102.8 8 15 3.1e-07 0.00027 21.2 3.5 1 23 719 741 719 741 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF316-201 - 1004 4.9e-77 250.3 102.8 9 15 3.2e-06 0.0028 18.0 0.1 1 23 747 769 747 769 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF316-201 - 1004 4.9e-77 250.3 102.8 10 15 2.9e-06 0.0026 18.1 0.1 1 23 775 797 775 797 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF316-201 - 1004 4.9e-77 250.3 102.8 11 15 2.9e-05 0.026 15.0 0.0 1 20 803 822 803 825 0.95 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF316-201 - 1004 4.9e-77 250.3 102.8 12 15 1.7e-07 0.00015 22.0 4.8 1 23 831 853 831 853 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF316-201 - 1004 4.9e-77 250.3 102.8 13 15 3.6e-08 3.2e-05 24.1 0.2 1 23 859 881 859 881 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF316-201 - 1004 4.9e-77 250.3 102.8 14 15 2.1e-08 1.9e-05 24.8 0.6 1 23 887 909 887 909 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF316-201 - 1004 4.9e-77 250.3 102.8 15 15 6.4e-08 5.8e-05 23.3 2.4 1 23 915 937 915 937 0.98 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZNF316-201 - 1004 2.5e-44 146.1 97.6 1 15 0.00026 0.23 12.4 1.0 2 23 346 367 345 368 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF316-201 - 1004 2.5e-44 146.1 97.6 2 15 0.00036 0.32 12.0 0.6 1 23 373 395 373 396 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF316-201 - 1004 2.5e-44 146.1 97.6 3 15 7.4e-06 0.0067 17.2 1.4 1 23 401 423 401 424 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF316-201 - 1004 2.5e-44 146.1 97.6 4 15 0.00024 0.21 12.5 0.4 1 23 429 451 429 452 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF316-201 - 1004 2.5e-44 146.1 97.6 5 15 1.4e-06 0.0012 19.5 1.0 1 23 457 479 457 480 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF316-201 - 1004 2.5e-44 146.1 97.6 6 15 0.0016 1.4 9.9 1.2 1 21 485 505 485 506 0.91 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF316-201 - 1004 2.5e-44 146.1 97.6 7 15 0.0001 0.093 13.6 0.1 2 23 692 713 691 714 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF316-201 - 1004 2.5e-44 146.1 97.6 8 15 0.00046 0.41 11.6 2.5 1 23 719 741 719 742 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF316-201 - 1004 2.5e-44 146.1 97.6 9 15 2.8e-05 0.025 15.4 0.1 1 23 747 769 747 770 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF316-201 - 1004 2.5e-44 146.1 97.6 10 15 0.0028 2.5 9.2 0.2 1 19 775 793 775 797 0.89 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF316-201 - 1004 2.5e-44 146.1 97.6 11 15 0.00015 0.14 13.1 0.0 1 23 803 825 803 826 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF316-201 - 1004 2.5e-44 146.1 97.6 12 15 0.0001 0.092 13.6 2.9 1 23 831 853 831 854 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF316-201 - 1004 2.5e-44 146.1 97.6 13 15 0.00043 0.38 11.7 0.2 1 23 859 881 859 882 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF316-201 - 1004 2.5e-44 146.1 97.6 14 15 3.4e-06 0.003 18.2 0.6 1 23 887 909 887 910 0.90 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF316-201 - 1004 2.5e-44 146.1 97.6 15 15 2.8e-06 0.0025 18.5 1.9 1 23 915 937 915 938 0.95 C2H2-type zinc finger KRAB PF01352.27 42 ZNF316-201 - 1004 2.3e-21 75.2 0.7 1 1 4.5e-24 4e-21 74.4 0.7 1 42 157 198 157 198 0.99 KRAB box zf-C2H2_jaz PF12171.8 27 ZNF316-201 - 1004 8.1e-19 67.4 8.2 1 14 0.19 1.7e+02 2.6 0.1 4 21 347 364 346 365 0.89 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF316-201 - 1004 8.1e-19 67.4 8.2 2 14 0.64 5.8e+02 1.0 0.1 4 12 375 383 372 395 0.77 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF316-201 - 1004 8.1e-19 67.4 8.2 3 14 1.3 1.2e+03 -0.0 0.0 2 20 401 419 400 421 0.75 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF316-201 - 1004 8.1e-19 67.4 8.2 4 14 0.067 60 4.1 0.0 2 24 429 451 428 451 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF316-201 - 1004 8.1e-19 67.4 8.2 5 14 0.022 19 5.7 0.0 2 21 457 476 456 477 0.90 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF316-201 - 1004 8.1e-19 67.4 8.2 6 14 0.026 23 5.4 0.0 2 22 691 711 690 711 0.91 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF316-201 - 1004 8.1e-19 67.4 8.2 7 14 5.4 4.9e+03 -2.0 0.0 2 11 719 728 718 740 0.85 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF316-201 - 1004 8.1e-19 67.4 8.2 8 14 0.15 1.3e+02 3.0 0.0 2 24 747 769 746 769 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF316-201 - 1004 8.1e-19 67.4 8.2 9 14 0.79 7e+02 0.7 0.0 2 20 775 793 774 793 0.90 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF316-201 - 1004 8.1e-19 67.4 8.2 10 14 1.2 1.1e+03 0.1 0.0 2 20 803 821 802 822 0.88 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF316-201 - 1004 8.1e-19 67.4 8.2 11 14 0.00038 0.34 11.3 0.1 2 24 831 853 830 853 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF316-201 - 1004 8.1e-19 67.4 8.2 12 14 0.096 86 3.6 0.0 2 24 859 881 858 881 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF316-201 - 1004 8.1e-19 67.4 8.2 13 14 0.00087 0.78 10.1 0.0 2 24 887 909 886 909 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF316-201 - 1004 8.1e-19 67.4 8.2 14 14 0.013 12 6.3 0.1 2 24 915 937 914 938 0.92 Zinc-finger double-stranded RNA-binding Zn-ribbon_8 PF09723.10 40 ZNF316-201 - 1004 4e-13 49.2 58.4 1 10 0.35 3.1e+02 1.6 0.1 25 34 343 352 336 363 0.73 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF316-201 - 1004 4e-13 49.2 58.4 2 10 0.00013 0.12 12.5 1.1 6 35 373 409 366 413 0.86 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF316-201 - 1004 4e-13 49.2 58.4 3 10 0.0053 4.7 7.4 3.0 6 34 429 464 428 468 0.88 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF316-201 - 1004 4e-13 49.2 58.4 4 10 2.6e-05 0.024 14.8 2.6 6 36 457 494 456 497 0.87 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF316-201 - 1004 4e-13 49.2 58.4 5 10 0.0056 5 7.3 1.2 8 34 693 726 691 729 0.86 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF316-201 - 1004 4e-13 49.2 58.4 6 10 8e-05 0.071 13.2 1.4 7 38 720 758 711 759 0.83 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF316-201 - 1004 4e-13 49.2 58.4 7 10 1 9e+02 0.1 0.1 6 18 775 787 768 793 0.78 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF316-201 - 1004 4e-13 49.2 58.4 8 10 4.7e-05 0.042 14.0 1.9 6 34 803 838 802 840 0.82 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF316-201 - 1004 4e-13 49.2 58.4 9 10 8.1e-05 0.072 13.2 2.1 6 36 859 896 858 901 0.78 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF316-201 - 1004 4e-13 49.2 58.4 10 10 0.0087 7.8 6.7 0.0 6 17 915 926 914 945 0.84 Zinc ribbon domain zf_UBZ PF18439.1 32 ZNF316-201 - 1004 1.5e-08 34.1 48.5 1 14 0.0011 0.95 9.1 0.1 4 27 346 370 344 371 0.92 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF316-201 - 1004 1.5e-08 34.1 48.5 2 14 0.32 2.8e+02 1.2 0.1 5 11 375 381 372 383 0.82 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF316-201 - 1004 1.5e-08 34.1 48.5 3 14 0.012 11 5.7 0.2 3 12 401 410 399 414 0.90 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF316-201 - 1004 1.5e-08 34.1 48.5 4 14 0.0031 2.7 7.6 0.1 3 20 457 475 455 476 0.86 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF316-201 - 1004 1.5e-08 34.1 48.5 5 14 0.2 1.8e+02 1.8 0.9 5 20 487 503 485 504 0.80 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF316-201 - 1004 1.5e-08 34.1 48.5 6 14 0.011 10 5.8 0.0 3 24 691 713 689 714 0.76 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF316-201 - 1004 1.5e-08 34.1 48.5 7 14 0.18 1.6e+02 2.0 0.1 4 12 720 728 718 730 0.87 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF316-201 - 1004 1.5e-08 34.1 48.5 8 14 0.012 11 5.7 0.0 3 13 747 757 745 765 0.84 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF316-201 - 1004 1.5e-08 34.1 48.5 9 14 7.2 6.5e+03 -3.2 0.0 3 12 775 784 774 788 0.83 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF316-201 - 1004 1.5e-08 34.1 48.5 10 14 0.092 82 2.9 0.0 3 20 803 821 801 822 0.77 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF316-201 - 1004 1.5e-08 34.1 48.5 11 14 0.14 1.2e+02 2.4 0.2 4 13 832 841 830 850 0.75 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF316-201 - 1004 1.5e-08 34.1 48.5 12 14 0.32 2.9e+02 1.2 0.0 3 13 859 869 857 877 0.80 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF316-201 - 1004 1.5e-08 34.1 48.5 13 14 0.0015 1.3 8.7 0.1 3 15 887 899 885 906 0.84 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF316-201 - 1004 1.5e-08 34.1 48.5 14 14 0.019 17 5.1 0.0 3 20 915 933 913 934 0.84 Ubiquitin-Binding Zinc Finger zf-C2H2_6 PF13912.6 27 ZNF316-201 - 1004 2.9e-07 30.3 88.1 1 15 0.0014 1.3 9.1 0.2 3 12 346 355 345 367 0.90 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF316-201 - 1004 2.9e-07 30.3 88.1 2 15 0.09 81 3.4 0.5 2 13 373 384 373 397 0.78 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF316-201 - 1004 2.9e-07 30.3 88.1 3 15 0.012 10 6.2 0.3 2 24 401 423 401 426 0.88 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF316-201 - 1004 2.9e-07 30.3 88.1 4 15 0.2 1.8e+02 2.3 0.5 2 24 429 451 429 454 0.87 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF316-201 - 1004 2.9e-07 30.3 88.1 5 15 0.029 26 5.0 0.6 2 17 457 472 457 480 0.78 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF316-201 - 1004 2.9e-07 30.3 88.1 6 15 1.7 1.5e+03 -0.7 1.1 2 12 485 495 485 495 0.90 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF316-201 - 1004 2.9e-07 30.3 88.1 7 15 0.0041 3.7 7.7 0.1 3 24 692 713 691 716 0.89 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF316-201 - 1004 2.9e-07 30.3 88.1 8 15 0.00027 0.24 11.4 2.5 2 24 719 741 719 744 0.95 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF316-201 - 1004 2.9e-07 30.3 88.1 9 15 0.0021 1.9 8.6 0.1 2 20 747 765 747 770 0.82 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF316-201 - 1004 2.9e-07 30.3 88.1 10 15 0.087 78 3.4 0.2 2 24 775 797 775 800 0.82 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF316-201 - 1004 2.9e-07 30.3 88.1 11 15 0.072 64 3.7 0.1 2 20 803 821 803 827 0.83 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF316-201 - 1004 2.9e-07 30.3 88.1 12 15 0.21 1.9e+02 2.2 1.0 2 12 831 841 831 855 0.81 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF316-201 - 1004 2.9e-07 30.3 88.1 13 15 0.26 2.3e+02 1.9 0.3 2 24 859 881 859 884 0.90 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF316-201 - 1004 2.9e-07 30.3 88.1 14 15 0.00011 0.097 12.7 0.2 2 24 887 909 887 912 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF316-201 - 1004 2.9e-07 30.3 88.1 15 15 0.0033 2.9 8.0 2.0 2 25 915 938 915 940 0.94 C2H2-type zinc finger # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF316-201.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF316-201.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF316-201.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF316-201.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF316-201.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:03:45 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF316-202.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF316-202.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF316-202.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF316-202.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF316-202.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:03:45 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF316-203.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF316-203.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF316-203.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF316-203.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF316-203.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:03:45 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZNF317-201 - 595 1.2e-100 325.8 94.0 1 15 8.2 6.4e+03 -2.1 0.1 6 15 185 194 185 195 0.82 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF317-201 - 595 1.2e-100 325.8 94.0 2 15 0.00063 0.49 10.9 2.1 1 26 208 233 208 233 0.87 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF317-201 - 595 1.2e-100 325.8 94.0 3 15 7.7e-13 6e-10 39.1 0.2 1 25 236 260 236 261 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF317-201 - 595 1.2e-100 325.8 94.0 4 15 3.5e-08 2.8e-05 24.3 0.3 1 25 264 288 264 289 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF317-201 - 595 1.2e-100 325.8 94.0 5 15 1.3e-11 1e-08 35.2 0.2 1 25 292 316 292 317 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF317-201 - 595 1.2e-100 325.8 94.0 6 15 2.5e-09 2e-06 28.0 3.8 1 24 320 343 320 345 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF317-201 - 595 1.2e-100 325.8 94.0 7 15 1.6e-10 1.3e-07 31.8 1.7 1 24 348 371 348 372 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF317-201 - 595 1.2e-100 325.8 94.0 8 15 1.4e-08 1.1e-05 25.6 1.3 1 25 376 400 376 401 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF317-201 - 595 1.2e-100 325.8 94.0 9 15 2.2e-09 1.7e-06 28.2 1.2 3 26 406 429 404 429 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF317-201 - 595 1.2e-100 325.8 94.0 10 15 1.3e-09 1e-06 28.9 0.1 2 25 433 456 433 457 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF317-201 - 595 1.2e-100 325.8 94.0 11 15 3.1e-09 2.4e-06 27.7 0.1 1 25 460 484 460 485 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF317-201 - 595 1.2e-100 325.8 94.0 12 15 2.2e-08 1.7e-05 25.0 0.7 3 26 490 513 488 513 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF317-201 - 595 1.2e-100 325.8 94.0 13 15 4.3e-12 3.4e-09 36.7 1.9 2 25 517 540 516 540 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF317-201 - 595 1.2e-100 325.8 94.0 14 15 2.3e-11 1.8e-08 34.4 0.1 1 25 544 568 544 569 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF317-201 - 595 1.2e-100 325.8 94.0 15 15 0.0023 1.8 9.2 0.1 1 15 572 586 572 590 0.90 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZNF317-201 - 595 1.1e-66 217.7 97.7 1 14 0.3 2.3e+02 2.5 0.0 9 21 202 214 200 215 0.86 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF317-201 - 595 1.1e-66 217.7 97.7 2 14 3.7e-07 0.00029 21.1 4.5 1 23 222 244 222 244 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF317-201 - 595 1.1e-66 217.7 97.7 3 14 1e-09 8.2e-07 29.2 0.1 1 23 250 272 250 272 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF317-201 - 595 1.1e-66 217.7 97.7 4 14 3.5e-07 0.00028 21.2 0.2 1 23 278 300 278 300 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF317-201 - 595 1.1e-66 217.7 97.7 5 14 2.6e-06 0.002 18.5 3.6 1 23 306 328 306 328 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF317-201 - 595 1.1e-66 217.7 97.7 6 14 3e-08 2.3e-05 24.6 4.4 1 23 334 356 334 356 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF317-201 - 595 1.1e-66 217.7 97.7 7 14 7e-05 0.055 14.0 1.2 1 23 362 384 362 384 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF317-201 - 595 1.1e-66 217.7 97.7 8 14 3.8e-07 0.0003 21.1 0.6 1 23 390 412 390 412 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF317-201 - 595 1.1e-66 217.7 97.7 9 14 1e-06 0.00078 19.8 1.1 2 23 419 440 418 440 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF317-201 - 595 1.1e-66 217.7 97.7 10 14 2.3e-07 0.00018 21.8 0.1 3 23 448 468 446 468 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF317-201 - 595 1.1e-66 217.7 97.7 11 14 0.0003 0.23 12.0 0.2 1 23 474 496 474 496 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF317-201 - 595 1.1e-66 217.7 97.7 12 14 9.2e-09 7.2e-06 26.2 1.2 2 23 503 524 502 524 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF317-201 - 595 1.1e-66 217.7 97.7 13 14 3.2e-07 0.00025 21.3 0.4 1 23 530 552 530 552 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF317-201 - 595 1.1e-66 217.7 97.7 14 14 7.2e-08 5.6e-05 23.4 1.3 1 23 558 580 558 580 0.98 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZNF317-201 - 595 6.5e-45 147.9 91.1 1 14 7.9 6.2e+03 -1.4 0.0 10 21 203 214 200 215 0.79 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF317-201 - 595 6.5e-45 147.9 91.1 2 14 6.2e-05 0.048 14.5 3.3 1 23 222 244 222 245 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF317-201 - 595 6.5e-45 147.9 91.1 3 14 8.4e-07 0.00066 20.3 0.1 1 23 250 272 250 273 0.97 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF317-201 - 595 6.5e-45 147.9 91.1 4 14 1.9e-05 0.015 16.1 0.3 3 23 280 300 278 301 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF317-201 - 595 6.5e-45 147.9 91.1 5 14 4.4e-05 0.034 15.0 2.7 1 23 306 328 306 329 0.97 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF317-201 - 595 6.5e-45 147.9 91.1 6 14 0.00028 0.22 12.5 3.7 1 23 334 356 334 357 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF317-201 - 595 6.5e-45 147.9 91.1 7 14 0.0013 0.98 10.4 1.0 1 23 362 384 362 385 0.88 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF317-201 - 595 6.5e-45 147.9 91.1 8 14 2.7e-05 0.021 15.6 0.3 1 23 390 412 390 413 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF317-201 - 595 6.5e-45 147.9 91.1 9 14 2.4e-06 0.0019 18.9 0.6 2 23 419 440 418 441 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF317-201 - 595 6.5e-45 147.9 91.1 10 14 0.00011 0.088 13.7 0.1 2 23 447 468 446 469 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF317-201 - 595 6.5e-45 147.9 91.1 11 14 0.00087 0.68 10.9 0.2 1 23 474 496 474 497 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF317-201 - 595 6.5e-45 147.9 91.1 12 14 4.8e-07 0.00038 21.1 0.9 2 23 503 524 502 525 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF317-201 - 595 6.5e-45 147.9 91.1 13 14 5.2e-05 0.04 14.8 0.3 1 23 530 552 530 553 0.88 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF317-201 - 595 6.5e-45 147.9 91.1 14 14 6.6e-07 0.00052 20.6 1.6 1 23 558 580 558 581 0.97 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF317-201 - 595 6.9e-29 99.3 96.9 1 13 7.5e-05 0.059 13.4 2.2 2 24 222 244 221 247 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF317-201 - 595 6.9e-29 99.3 96.9 2 13 2.6e-05 0.021 14.8 0.2 2 27 250 275 250 275 0.96 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF317-201 - 595 6.9e-29 99.3 96.9 3 13 1.1e-05 0.0083 16.1 0.1 2 24 278 300 278 303 0.92 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF317-201 - 595 6.9e-29 99.3 96.9 4 13 0.00015 0.12 12.4 3.9 2 24 306 328 306 331 0.95 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF317-201 - 595 6.9e-29 99.3 96.9 5 13 0.055 43 4.3 1.9 2 12 334 344 334 358 0.81 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF317-201 - 595 6.9e-29 99.3 96.9 6 13 0.0047 3.6 7.7 2.6 2 25 362 385 362 387 0.91 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF317-201 - 595 6.9e-29 99.3 96.9 7 13 3.3e-06 0.0026 17.7 0.5 2 24 390 412 389 412 0.91 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF317-201 - 595 6.9e-29 99.3 96.9 8 13 0.00049 0.39 10.8 0.8 3 24 419 440 419 443 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF317-201 - 595 6.9e-29 99.3 96.9 9 13 0.00013 0.1 12.7 0.4 2 24 446 468 446 471 0.91 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF317-201 - 595 6.9e-29 99.3 96.9 10 13 0.0045 3.5 7.7 0.1 1 13 473 485 473 497 0.82 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF317-201 - 595 6.9e-29 99.3 96.9 11 13 5.7e-05 0.045 13.8 1.3 3 24 503 524 503 527 0.95 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF317-201 - 595 6.9e-29 99.3 96.9 12 13 4.3e-05 0.034 14.2 0.3 2 24 530 552 530 555 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF317-201 - 595 6.9e-29 99.3 96.9 13 13 3.8e-05 0.029 14.4 1.6 2 26 558 582 558 583 0.96 C2H2-type zinc finger KRAB PF01352.27 42 ZNF317-201 - 595 1.5e-24 85.4 0.2 1 1 3.1e-27 2.4e-24 84.7 0.2 1 42 56 97 56 97 0.99 KRAB box zf-C2H2_jaz PF12171.8 27 ZNF317-201 - 595 2.8e-18 65.7 57.1 1 13 0.0018 1.4 9.3 0.5 2 21 222 241 221 242 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF317-201 - 595 2.8e-18 65.7 57.1 2 13 0.00072 0.56 10.6 0.1 2 23 250 271 249 276 0.90 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF317-201 - 595 2.8e-18 65.7 57.1 3 13 3.8 2.9e+03 -1.3 0.0 2 22 278 298 277 298 0.85 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF317-201 - 595 2.8e-18 65.7 57.1 4 13 2.7 2.1e+03 -0.9 1.1 2 23 306 327 305 328 0.78 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF317-201 - 595 2.8e-18 65.7 57.1 5 13 0.0062 4.8 7.6 1.4 2 22 334 354 333 356 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF317-201 - 595 2.8e-18 65.7 57.1 6 13 1.3 9.8e+02 0.2 1.2 2 22 362 382 361 384 0.84 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF317-201 - 595 2.8e-18 65.7 57.1 7 13 0.011 8.7 6.8 0.0 2 21 390 409 389 410 0.85 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF317-201 - 595 2.8e-18 65.7 57.1 8 13 2e-05 0.015 15.5 0.7 4 24 420 440 418 440 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF317-201 - 595 2.8e-18 65.7 57.1 9 13 0.019 14 6.1 0.0 4 22 448 466 445 466 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF317-201 - 595 2.8e-18 65.7 57.1 10 13 0.095 74 3.8 0.0 2 13 474 485 473 494 0.77 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF317-201 - 595 2.8e-18 65.7 57.1 11 13 2e-05 0.016 15.5 0.4 4 24 504 524 502 524 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF317-201 - 595 2.8e-18 65.7 57.1 12 13 0.06 47 4.4 0.0 2 12 530 540 529 550 0.84 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF317-201 - 595 2.8e-18 65.7 57.1 13 13 1.7e-06 0.0014 18.9 0.1 2 24 558 580 557 581 0.94 Zinc-finger double-stranded RNA-binding Zn-ribbon_8 PF09723.10 40 ZNF317-201 - 595 6.7e-12 45.3 55.6 1 11 0.0094 7.3 6.8 4.9 7 34 223 257 213 260 0.83 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF317-201 - 595 6.7e-12 45.3 55.6 2 11 0.00044 0.34 11.0 2.1 6 36 250 287 249 290 0.71 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF317-201 - 595 6.7e-12 45.3 55.6 3 11 0.0023 1.8 8.8 1.9 6 35 278 314 277 318 0.78 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF317-201 - 595 6.7e-12 45.3 55.6 4 11 0.00021 0.16 12.1 4.2 6 36 334 371 333 375 0.84 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF317-201 - 595 6.7e-12 45.3 55.6 5 11 3.4e-05 0.027 14.6 2.4 6 37 390 428 388 431 0.74 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF317-201 - 595 6.7e-12 45.3 55.6 6 11 0.0077 6 7.1 2.1 7 34 419 453 417 457 0.79 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF317-201 - 595 6.7e-12 45.3 55.6 7 11 0.17 1.4e+02 2.7 0.1 6 17 446 457 445 469 0.82 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF317-201 - 595 6.7e-12 45.3 55.6 8 11 8.2e-05 0.064 13.4 0.9 6 37 474 512 473 515 0.74 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF317-201 - 595 6.7e-12 45.3 55.6 9 11 0.0029 2.3 8.4 4.2 7 34 503 537 500 540 0.81 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF317-201 - 595 6.7e-12 45.3 55.6 10 11 0.00023 0.18 12.0 1.2 6 34 530 565 529 570 0.91 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF317-201 - 595 6.7e-12 45.3 55.6 11 11 0.092 71 3.6 0.1 6 17 558 569 557 576 0.83 Zinc ribbon domain zf-C2H2_11 PF16622.5 29 ZNF317-201 - 595 2.7e-11 43.0 63.2 1 13 3.9e-05 0.03 14.1 3.3 6 26 223 243 221 244 0.94 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF317-201 - 595 2.7e-11 43.0 63.2 2 13 0.25 2e+02 1.9 0.0 6 24 251 269 248 271 0.85 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF317-201 - 595 2.7e-11 43.0 63.2 3 13 0.064 50 3.8 0.2 7 26 280 299 277 300 0.91 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF317-201 - 595 2.7e-11 43.0 63.2 4 13 0.56 4.4e+02 0.8 0.9 5 14 306 315 304 325 0.83 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF317-201 - 595 2.7e-11 43.0 63.2 5 13 0.57 4.4e+02 0.7 0.2 6 23 335 352 333 354 0.78 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF317-201 - 595 2.7e-11 43.0 63.2 6 13 0.55 4.3e+02 0.8 0.2 7 14 364 371 361 373 0.85 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF317-201 - 595 2.7e-11 43.0 63.2 7 13 0.00051 0.39 10.5 0.1 3 26 388 411 387 412 0.93 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF317-201 - 595 2.7e-11 43.0 63.2 8 13 0.0053 4.1 7.2 0.1 6 24 419 437 417 438 0.93 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF317-201 - 595 2.7e-11 43.0 63.2 9 13 0.017 13 5.6 0.1 7 26 448 467 445 468 0.93 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF317-201 - 595 2.7e-11 43.0 63.2 10 13 0.028 22 4.9 0.4 7 25 476 494 473 496 0.91 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF317-201 - 595 2.7e-11 43.0 63.2 11 13 0.002 1.6 8.6 0.7 6 25 503 522 501 523 0.94 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF317-201 - 595 2.7e-11 43.0 63.2 12 13 0.00055 0.43 10.4 0.1 6 26 531 551 528 552 0.94 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF317-201 - 595 2.7e-11 43.0 63.2 13 13 0.0016 1.3 8.9 0.2 6 24 559 577 556 579 0.92 zinc-finger C2H2-type zf-met PF12874.7 25 ZNF317-201 - 595 1.4e-08 34.8 56.4 1 10 1.6 1.3e+03 0.0 1.4 6 19 227 240 222 245 0.83 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF317-201 - 595 1.4e-08 34.8 56.4 2 10 7.7e-05 0.06 13.8 0.1 1 21 250 270 250 272 0.92 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF317-201 - 595 1.4e-08 34.8 56.4 3 10 0.0043 3.3 8.2 0.7 1 20 334 353 334 354 0.93 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF317-201 - 595 1.4e-08 34.8 56.4 4 10 0.026 21 5.7 0.1 1 21 390 410 390 412 0.92 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF317-201 - 595 1.4e-08 34.8 56.4 5 10 0.00033 0.26 11.7 1.3 5 23 422 440 419 441 0.89 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF317-201 - 595 1.4e-08 34.8 56.4 6 10 0.052 41 4.8 0.1 3 19 448 464 446 468 0.89 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF317-201 - 595 1.4e-08 34.8 56.4 7 10 0.31 2.4e+02 2.3 0.0 1 10 474 483 474 494 0.88 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF317-201 - 595 1.4e-08 34.8 56.4 8 10 0.0012 0.93 10.0 1.1 6 23 507 524 503 525 0.89 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF317-201 - 595 1.4e-08 34.8 56.4 9 10 2.9 2.2e+03 -0.8 0.1 1 10 530 539 530 548 0.87 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF317-201 - 595 1.4e-08 34.8 56.4 10 10 0.00028 0.22 12.0 0.8 1 22 558 579 558 581 0.90 Zinc-finger of C2H2 type zf-C2HE PF16278.5 64 ZNF317-201 - 595 4.7e-07 30.2 71.9 1 10 0.61 4.8e+02 1.3 1.3 39 54 223 237 218 245 0.73 C2HE / C2H2 / C2HC zinc-binding finger zf-C2HE PF16278.5 64 ZNF317-201 - 595 4.7e-07 30.2 71.9 2 10 0.032 25 5.4 0.2 36 63 248 274 244 275 0.89 C2HE / C2H2 / C2HC zinc-binding finger zf-C2HE PF16278.5 64 ZNF317-201 - 595 4.7e-07 30.2 71.9 3 10 3.7e-07 0.00029 21.2 0.2 28 61 269 300 261 303 0.83 C2HE / C2H2 / C2HC zinc-binding finger zf-C2HE PF16278.5 64 ZNF317-201 - 595 4.7e-07 30.2 71.9 4 10 0.43 3.3e+02 1.8 0.4 36 50 304 318 301 329 0.85 C2HE / C2H2 / C2HC zinc-binding finger zf-C2HE PF16278.5 64 ZNF317-201 - 595 4.7e-07 30.2 71.9 5 10 0.00065 0.5 10.8 2.4 35 62 331 357 320 359 0.88 C2HE / C2H2 / C2HC zinc-binding finger zf-C2HE PF16278.5 64 ZNF317-201 - 595 4.7e-07 30.2 71.9 6 10 0.15 1.1e+02 3.3 0.2 36 47 360 371 357 374 0.84 C2HE / C2H2 / C2HC zinc-binding finger zf-C2HE PF16278.5 64 ZNF317-201 - 595 4.7e-07 30.2 71.9 7 10 0.0023 1.8 9.1 5.8 31 62 410 441 374 443 0.76 C2HE / C2H2 / C2HC zinc-binding finger zf-C2HE PF16278.5 64 ZNF317-201 - 595 4.7e-07 30.2 71.9 8 10 0.0022 1.7 9.1 4.4 29 62 494 525 449 527 0.79 C2HE / C2H2 / C2HC zinc-binding finger zf-C2HE PF16278.5 64 ZNF317-201 - 595 4.7e-07 30.2 71.9 9 10 1 8.1e+02 0.6 0.2 36 47 528 539 526 548 0.86 C2HE / C2H2 / C2HC zinc-binding finger zf-C2HE PF16278.5 64 ZNF317-201 - 595 4.7e-07 30.2 71.9 10 10 0.014 11 6.6 0.3 35 61 555 580 543 582 0.90 C2HE / C2H2 / C2HC zinc-binding finger # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF317-201.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF317-201.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF317-201.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF317-201.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF317-201.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:03:46 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZNF317-202 - 563 4.8e-101 327.1 94.0 1 15 8 6e+03 -2.0 0.1 6 15 153 162 153 163 0.82 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF317-202 - 563 4.8e-101 327.1 94.0 2 15 0.00062 0.46 11.0 2.1 1 26 176 201 176 201 0.87 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF317-202 - 563 4.8e-101 327.1 94.0 3 15 7.5e-13 5.6e-10 39.2 0.2 1 25 204 228 204 229 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF317-202 - 563 4.8e-101 327.1 94.0 4 15 3.5e-08 2.6e-05 24.4 0.3 1 25 232 256 232 257 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF317-202 - 563 4.8e-101 327.1 94.0 5 15 1.3e-11 9.8e-09 35.3 0.2 1 25 260 284 260 285 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF317-202 - 563 4.8e-101 327.1 94.0 6 15 2.5e-09 1.9e-06 28.1 3.8 1 24 288 311 288 313 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF317-202 - 563 4.8e-101 327.1 94.0 7 15 1.6e-10 1.2e-07 31.8 1.7 1 24 316 339 316 340 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF317-202 - 563 4.8e-101 327.1 94.0 8 15 1.4e-08 1e-05 25.7 1.3 1 25 344 368 344 369 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF317-202 - 563 4.8e-101 327.1 94.0 9 15 2.2e-09 1.6e-06 28.2 1.2 3 26 374 397 372 397 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF317-202 - 563 4.8e-101 327.1 94.0 10 15 1.3e-09 9.6e-07 29.0 0.1 2 25 401 424 401 425 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF317-202 - 563 4.8e-101 327.1 94.0 11 15 3e-09 2.3e-06 27.8 0.1 1 25 428 452 428 453 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF317-202 - 563 4.8e-101 327.1 94.0 12 15 2.1e-08 1.6e-05 25.1 0.7 3 26 458 481 456 481 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF317-202 - 563 4.8e-101 327.1 94.0 13 15 4.2e-12 3.1e-09 36.8 1.9 2 25 485 508 484 508 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF317-202 - 563 4.8e-101 327.1 94.0 14 15 2.2e-11 1.7e-08 34.5 0.1 1 25 512 536 512 537 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF317-202 - 563 4.8e-101 327.1 94.0 15 15 0.0022 1.7 9.2 0.1 1 15 540 554 540 558 0.90 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZNF317-202 - 563 5e-67 218.8 97.7 1 14 0.29 2.2e+02 2.6 0.0 9 21 170 182 168 183 0.86 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF317-202 - 563 5e-67 218.8 97.7 2 14 3.6e-07 0.00027 21.2 4.5 1 23 190 212 190 212 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF317-202 - 563 5e-67 218.8 97.7 3 14 1e-09 7.7e-07 29.2 0.1 1 23 218 240 218 240 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF317-202 - 563 5e-67 218.8 97.7 4 14 3.5e-07 0.00026 21.3 0.2 1 23 246 268 246 268 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF317-202 - 563 5e-67 218.8 97.7 5 14 2.5e-06 0.0019 18.6 3.6 1 23 274 296 274 296 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF317-202 - 563 5e-67 218.8 97.7 6 14 2.9e-08 2.2e-05 24.7 4.4 1 23 302 324 302 324 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF317-202 - 563 5e-67 218.8 97.7 7 14 6.8e-05 0.051 14.0 1.2 1 23 330 352 330 352 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF317-202 - 563 5e-67 218.8 97.7 8 14 3.7e-07 0.00028 21.2 0.6 1 23 358 380 358 380 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF317-202 - 563 5e-67 218.8 97.7 9 14 9.7e-07 0.00073 19.9 1.1 2 23 387 408 386 408 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF317-202 - 563 5e-67 218.8 97.7 10 14 2.2e-07 0.00016 21.9 0.1 3 23 416 436 414 436 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF317-202 - 563 5e-67 218.8 97.7 11 14 0.00029 0.22 12.1 0.2 1 23 442 464 442 464 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF317-202 - 563 5e-67 218.8 97.7 12 14 9e-09 6.8e-06 26.3 1.2 2 23 471 492 470 492 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF317-202 - 563 5e-67 218.8 97.7 13 14 3.2e-07 0.00024 21.4 0.4 1 23 498 520 498 520 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF317-202 - 563 5e-67 218.8 97.7 14 14 7e-08 5.3e-05 23.5 1.3 1 23 526 548 526 548 0.98 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZNF317-202 - 563 3e-45 148.9 91.1 1 14 7.8 5.8e+03 -1.3 0.0 10 21 171 182 168 183 0.79 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF317-202 - 563 3e-45 148.9 91.1 2 14 6.1e-05 0.045 14.6 3.3 1 23 190 212 190 213 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF317-202 - 563 3e-45 148.9 91.1 3 14 8.2e-07 0.00061 20.4 0.1 1 23 218 240 218 241 0.97 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF317-202 - 563 3e-45 148.9 91.1 4 14 1.9e-05 0.014 16.2 0.3 3 23 248 268 246 269 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF317-202 - 563 3e-45 148.9 91.1 5 14 4.3e-05 0.032 15.1 2.7 1 23 274 296 274 297 0.97 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF317-202 - 563 3e-45 148.9 91.1 6 14 0.00027 0.2 12.6 3.7 1 23 302 324 302 325 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF317-202 - 563 3e-45 148.9 91.1 7 14 0.0012 0.92 10.5 1.0 1 23 330 352 330 353 0.88 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF317-202 - 563 3e-45 148.9 91.1 8 14 2.7e-05 0.02 15.7 0.3 1 23 358 380 358 381 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF317-202 - 563 3e-45 148.9 91.1 9 14 2.3e-06 0.0017 19.0 0.6 2 23 387 408 386 409 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF317-202 - 563 3e-45 148.9 91.1 10 14 0.00011 0.082 13.8 0.1 2 23 415 436 414 437 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF317-202 - 563 3e-45 148.9 91.1 11 14 0.00085 0.64 11.0 0.2 1 23 442 464 442 465 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF317-202 - 563 3e-45 148.9 91.1 12 14 4.7e-07 0.00035 21.2 0.9 2 23 471 492 470 493 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF317-202 - 563 3e-45 148.9 91.1 13 14 5e-05 0.038 14.8 0.3 1 23 498 520 498 521 0.88 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF317-202 - 563 3e-45 148.9 91.1 14 14 6.5e-07 0.00048 20.7 1.6 1 23 526 548 526 549 0.97 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF317-202 - 563 2.9e-29 100.5 96.9 1 13 7.3e-05 0.055 13.5 2.2 2 24 190 212 189 215 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF317-202 - 563 2.9e-29 100.5 96.9 2 13 2.6e-05 0.019 14.9 0.2 2 27 218 243 218 243 0.96 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF317-202 - 563 2.9e-29 100.5 96.9 3 13 1e-05 0.0078 16.2 0.1 2 24 246 268 246 271 0.92 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF317-202 - 563 2.9e-29 100.5 96.9 4 13 0.00015 0.11 12.5 3.9 2 24 274 296 274 299 0.95 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF317-202 - 563 2.9e-29 100.5 96.9 5 13 0.054 40 4.4 1.9 2 12 302 312 302 326 0.81 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF317-202 - 563 2.9e-29 100.5 96.9 6 13 0.0045 3.4 7.8 2.6 2 25 330 353 330 355 0.91 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF317-202 - 563 2.9e-29 100.5 96.9 7 13 3.2e-06 0.0024 17.8 0.5 2 24 358 380 357 380 0.91 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF317-202 - 563 2.9e-29 100.5 96.9 8 13 0.00048 0.36 10.9 0.8 3 24 387 408 387 411 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF317-202 - 563 2.9e-29 100.5 96.9 9 13 0.00013 0.094 12.7 0.4 2 24 414 436 414 439 0.91 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF317-202 - 563 2.9e-29 100.5 96.9 10 13 0.0044 3.3 7.8 0.1 1 13 441 453 441 465 0.82 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF317-202 - 563 2.9e-29 100.5 96.9 11 13 5.6e-05 0.042 13.9 1.3 3 24 471 492 471 495 0.95 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF317-202 - 563 2.9e-29 100.5 96.9 12 13 4.2e-05 0.032 14.3 0.3 2 24 498 520 498 523 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF317-202 - 563 2.9e-29 100.5 96.9 13 13 3.7e-05 0.027 14.5 1.6 2 26 526 550 526 551 0.96 C2H2-type zinc finger KRAB PF01352.27 42 ZNF317-202 - 563 1.4e-24 85.5 0.2 1 1 3e-27 2.3e-24 84.8 0.2 1 42 56 97 56 97 0.99 KRAB box zf-C2H2_jaz PF12171.8 27 ZNF317-202 - 563 1.3e-18 66.8 57.1 1 13 0.0018 1.3 9.4 0.5 2 21 190 209 189 210 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF317-202 - 563 1.3e-18 66.8 57.1 2 13 0.0007 0.52 10.7 0.1 2 23 218 239 217 244 0.90 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF317-202 - 563 1.3e-18 66.8 57.1 3 13 3.7 2.8e+03 -1.2 0.0 2 22 246 266 245 266 0.85 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF317-202 - 563 1.3e-18 66.8 57.1 4 13 2.7 2e+03 -0.8 1.1 2 23 274 295 273 296 0.78 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF317-202 - 563 1.3e-18 66.8 57.1 5 13 0.0061 4.5 7.7 1.4 2 22 302 322 301 324 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF317-202 - 563 1.3e-18 66.8 57.1 6 13 1.2 9.2e+02 0.3 1.2 2 22 330 350 329 352 0.84 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF317-202 - 563 1.3e-18 66.8 57.1 7 13 0.011 8.2 6.8 0.0 2 21 358 377 357 378 0.85 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF317-202 - 563 1.3e-18 66.8 57.1 8 13 1.9e-05 0.014 15.6 0.7 4 24 388 408 386 408 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF317-202 - 563 1.3e-18 66.8 57.1 9 13 0.018 14 6.1 0.0 4 22 416 434 413 434 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF317-202 - 563 1.3e-18 66.8 57.1 10 13 0.093 69 3.9 0.0 2 13 442 453 441 462 0.77 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF317-202 - 563 1.3e-18 66.8 57.1 11 13 2e-05 0.015 15.6 0.4 4 24 472 492 470 492 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF317-202 - 563 1.3e-18 66.8 57.1 12 13 0.059 44 4.5 0.0 2 12 498 508 497 518 0.84 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF317-202 - 563 1.3e-18 66.8 57.1 13 13 1.7e-06 0.0013 19.0 0.1 2 24 526 548 525 549 0.94 Zinc-finger double-stranded RNA-binding Zn-ribbon_8 PF09723.10 40 ZNF317-202 - 563 8.3e-12 45.0 56.7 1 11 0.0088 6.6 6.9 4.8 7 34 191 225 181 228 0.83 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF317-202 - 563 8.3e-12 45.0 56.7 2 11 0.00047 0.35 11.0 2.2 6 36 218 255 216 258 0.71 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF317-202 - 563 8.3e-12 45.0 56.7 3 11 0.0034 2.5 8.3 2.5 6 35 246 282 245 287 0.78 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF317-202 - 563 8.3e-12 45.0 56.7 4 11 0.00023 0.17 12.0 4.3 6 36 302 339 301 342 0.84 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF317-202 - 563 8.3e-12 45.0 56.7 5 11 3.6e-05 0.027 14.6 2.5 6 37 358 396 356 399 0.74 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF317-202 - 563 8.3e-12 45.0 56.7 6 11 0.0075 5.6 7.2 2.1 7 34 387 421 385 425 0.79 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF317-202 - 563 8.3e-12 45.0 56.7 7 11 0.17 1.3e+02 2.8 0.1 6 17 414 425 413 437 0.82 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF317-202 - 563 8.3e-12 45.0 56.7 8 11 9.9e-05 0.074 13.2 1.2 6 37 442 480 441 483 0.74 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF317-202 - 563 8.3e-12 45.0 56.7 9 11 0.003 2.2 8.4 4.3 7 34 471 505 469 508 0.80 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF317-202 - 563 8.3e-12 45.0 56.7 10 11 0.00021 0.16 12.1 1.1 6 34 498 533 497 537 0.91 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF317-202 - 563 8.3e-12 45.0 56.7 11 11 0.088 66 3.7 0.1 6 17 526 537 524 544 0.84 Zinc ribbon domain zf-C2H2_11 PF16622.5 29 ZNF317-202 - 563 1.3e-11 44.1 63.2 1 13 3.8e-05 0.029 14.1 3.3 6 26 191 211 189 212 0.94 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF317-202 - 563 1.3e-11 44.1 63.2 2 13 0.25 1.8e+02 2.0 0.0 6 24 219 237 216 239 0.85 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF317-202 - 563 1.3e-11 44.1 63.2 3 13 0.063 47 3.9 0.2 7 26 248 267 245 268 0.91 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF317-202 - 563 1.3e-11 44.1 63.2 4 13 0.55 4.1e+02 0.9 0.9 5 14 274 283 272 293 0.83 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF317-202 - 563 1.3e-11 44.1 63.2 5 13 0.56 4.1e+02 0.8 0.2 6 23 303 320 301 322 0.78 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF317-202 - 563 1.3e-11 44.1 63.2 6 13 0.54 4e+02 0.9 0.2 7 14 332 339 329 341 0.85 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF317-202 - 563 1.3e-11 44.1 63.2 7 13 0.00049 0.37 10.6 0.1 3 26 356 379 355 380 0.93 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF317-202 - 563 1.3e-11 44.1 63.2 8 13 0.0052 3.9 7.3 0.1 6 24 387 405 385 406 0.93 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF317-202 - 563 1.3e-11 44.1 63.2 9 13 0.017 12 5.7 0.1 7 26 416 435 413 436 0.93 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF317-202 - 563 1.3e-11 44.1 63.2 10 13 0.027 20 5.0 0.4 7 25 444 462 441 464 0.91 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF317-202 - 563 1.3e-11 44.1 63.2 11 13 0.002 1.5 8.7 0.7 6 25 471 490 469 491 0.94 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF317-202 - 563 1.3e-11 44.1 63.2 12 13 0.00054 0.4 10.5 0.1 6 26 499 519 496 520 0.94 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF317-202 - 563 1.3e-11 44.1 63.2 13 13 0.0016 1.2 9.0 0.2 6 24 527 545 524 547 0.92 zinc-finger C2H2-type zf-met PF12874.7 25 ZNF317-202 - 563 9.1e-09 35.4 56.4 1 10 1.6 1.2e+03 0.1 1.4 6 19 195 208 190 213 0.83 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF317-202 - 563 9.1e-09 35.4 56.4 2 10 7.5e-05 0.056 13.9 0.1 1 21 218 238 218 240 0.92 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF317-202 - 563 9.1e-09 35.4 56.4 3 10 0.0042 3.1 8.3 0.7 1 20 302 321 302 322 0.93 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF317-202 - 563 9.1e-09 35.4 56.4 4 10 0.026 19 5.8 0.1 1 21 358 378 358 380 0.92 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF317-202 - 563 9.1e-09 35.4 56.4 5 10 0.00033 0.24 11.8 1.3 5 23 390 408 387 409 0.89 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF317-202 - 563 9.1e-09 35.4 56.4 6 10 0.051 38 4.9 0.1 3 19 416 432 414 436 0.89 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF317-202 - 563 9.1e-09 35.4 56.4 7 10 0.3 2.3e+02 2.4 0.0 1 10 442 451 442 462 0.88 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF317-202 - 563 9.1e-09 35.4 56.4 8 10 0.0012 0.88 10.1 1.1 6 23 475 492 471 493 0.89 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF317-202 - 563 9.1e-09 35.4 56.4 9 10 2.8 2.1e+03 -0.7 0.1 1 10 498 507 498 516 0.87 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF317-202 - 563 9.1e-09 35.4 56.4 10 10 0.00028 0.21 12.1 0.8 1 22 526 547 526 549 0.90 Zinc-finger of C2H2 type zf-C2HE PF16278.5 64 ZNF317-202 - 563 4.1e-08 33.5 69.0 1 8 0.00033 0.25 11.8 10.5 25 61 234 268 176 271 0.86 C2HE / C2H2 / C2HC zinc-binding finger zf-C2HE PF16278.5 64 ZNF317-202 - 563 4.1e-08 33.5 69.0 2 8 0.41 3.1e+02 1.9 0.3 36 49 272 285 269 292 0.85 C2HE / C2H2 / C2HC zinc-binding finger zf-C2HE PF16278.5 64 ZNF317-202 - 563 4.1e-08 33.5 69.0 3 8 0.0006 0.45 11.0 2.3 35 62 299 325 288 327 0.88 C2HE / C2H2 / C2HC zinc-binding finger zf-C2HE PF16278.5 64 ZNF317-202 - 563 4.1e-08 33.5 69.0 4 8 0.16 1.2e+02 3.2 0.5 36 47 328 339 324 346 0.85 C2HE / C2H2 / C2HC zinc-binding finger zf-C2HE PF16278.5 64 ZNF317-202 - 563 4.1e-08 33.5 69.0 5 8 0.0028 2.1 8.9 6.1 31 62 378 409 342 411 0.76 C2HE / C2H2 / C2HC zinc-binding finger zf-C2HE PF16278.5 64 ZNF317-202 - 563 4.1e-08 33.5 69.0 6 8 0.0019 1.4 9.4 4.2 29 62 462 493 417 495 0.79 C2HE / C2H2 / C2HC zinc-binding finger zf-C2HE PF16278.5 64 ZNF317-202 - 563 4.1e-08 33.5 69.0 7 8 1 7.8e+02 0.6 0.2 36 47 496 507 494 516 0.86 C2HE / C2H2 / C2HC zinc-binding finger zf-C2HE PF16278.5 64 ZNF317-202 - 563 4.1e-08 33.5 69.0 8 8 0.014 10 6.6 0.3 35 61 523 548 511 550 0.90 C2HE / C2H2 / C2HC zinc-binding finger # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF317-202.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF317-202.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF317-202.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF317-202.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF317-202.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:03:46 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF317-203.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF317-203.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF317-203.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF317-203.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF317-203.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:03:47 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZNF317-204 - 510 8.1e-102 329.5 93.6 1 15 7.1 5.1e+03 -1.8 0.1 6 15 100 109 96 110 0.87 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF317-204 - 510 8.1e-102 329.5 93.6 2 15 0.00057 0.41 11.2 2.1 1 26 123 148 123 148 0.87 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF317-204 - 510 8.1e-102 329.5 93.6 3 15 6.9e-13 5e-10 39.4 0.2 1 25 151 175 151 176 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF317-204 - 510 8.1e-102 329.5 93.6 4 15 3.2e-08 2.3e-05 24.6 0.3 1 25 179 203 179 204 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF317-204 - 510 8.1e-102 329.5 93.6 5 15 1.2e-11 8.7e-09 35.4 0.2 1 25 207 231 207 232 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF317-204 - 510 8.1e-102 329.5 93.6 6 15 2.3e-09 1.6e-06 28.2 3.8 1 24 235 258 235 260 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF317-204 - 510 8.1e-102 329.5 93.6 7 15 1.5e-10 1e-07 32.0 1.7 1 24 263 286 263 287 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF317-204 - 510 8.1e-102 329.5 93.6 8 15 1.3e-08 9.1e-06 25.9 1.3 1 25 291 315 291 316 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF317-204 - 510 8.1e-102 329.5 93.6 9 15 2e-09 1.4e-06 28.4 1.2 3 26 321 344 319 344 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF317-204 - 510 8.1e-102 329.5 93.6 10 15 1.2e-09 8.5e-07 29.1 0.1 2 25 348 371 348 372 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF317-204 - 510 8.1e-102 329.5 93.6 11 15 2.8e-09 2e-06 28.0 0.1 1 25 375 399 375 400 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF317-204 - 510 8.1e-102 329.5 93.6 12 15 2e-08 1.4e-05 25.3 0.7 3 26 405 428 403 428 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF317-204 - 510 8.1e-102 329.5 93.6 13 15 3.9e-12 2.8e-09 37.0 1.9 2 25 432 455 431 455 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF317-204 - 510 8.1e-102 329.5 93.6 14 15 2.1e-11 1.5e-08 34.7 0.1 1 25 459 483 459 484 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF317-204 - 510 8.1e-102 329.5 93.6 15 15 0.0021 1.5 9.4 0.1 1 15 487 501 487 505 0.90 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZNF317-204 - 510 1e-67 221.0 97.7 1 14 0.27 1.9e+02 2.8 0.0 9 21 117 129 115 130 0.86 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF317-204 - 510 1e-67 221.0 97.7 2 14 3.3e-07 0.00024 21.4 4.5 1 23 137 159 137 159 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF317-204 - 510 1e-67 221.0 97.7 3 14 9.5e-10 6.8e-07 29.4 0.1 1 23 165 187 165 187 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF317-204 - 510 1e-67 221.0 97.7 4 14 3.2e-07 0.00023 21.4 0.2 1 23 193 215 193 215 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF317-204 - 510 1e-67 221.0 97.7 5 14 2.3e-06 0.0017 18.7 3.6 1 23 221 243 221 243 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF317-204 - 510 1e-67 221.0 97.7 6 14 2.7e-08 1.9e-05 24.8 4.4 1 23 249 271 249 271 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF317-204 - 510 1e-67 221.0 97.7 7 14 6.3e-05 0.045 14.2 1.2 1 23 277 299 277 299 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF317-204 - 510 1e-67 221.0 97.7 8 14 3.4e-07 0.00025 21.3 0.6 1 23 305 327 305 327 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF317-204 - 510 1e-67 221.0 97.7 9 14 9e-07 0.00065 20.0 1.1 2 23 334 355 333 355 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF317-204 - 510 1e-67 221.0 97.7 10 14 2e-07 0.00015 22.1 0.1 3 23 363 383 361 383 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF317-204 - 510 1e-67 221.0 97.7 11 14 0.00027 0.19 12.2 0.2 1 23 389 411 389 411 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF317-204 - 510 1e-67 221.0 97.7 12 14 8.4e-09 6e-06 26.4 1.2 2 23 418 439 417 439 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF317-204 - 510 1e-67 221.0 97.7 13 14 2.9e-07 0.00021 21.6 0.4 1 23 445 467 445 467 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF317-204 - 510 1e-67 221.0 97.7 14 14 6.5e-08 4.7e-05 23.6 1.3 1 23 473 495 473 495 0.98 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZNF317-204 - 510 6.6e-46 151.0 91.2 1 14 6.2 4.5e+03 -0.9 0.0 10 21 118 129 115 131 0.80 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF317-204 - 510 6.6e-46 151.0 91.2 2 14 5.6e-05 0.04 14.8 3.3 1 23 137 159 137 160 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF317-204 - 510 6.6e-46 151.0 91.2 3 14 7.6e-07 0.00054 20.6 0.1 1 23 165 187 165 188 0.97 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF317-204 - 510 6.6e-46 151.0 91.2 4 14 1.7e-05 0.012 16.3 0.3 3 23 195 215 193 216 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF317-204 - 510 6.6e-46 151.0 91.2 5 14 4e-05 0.028 15.2 2.7 1 23 221 243 221 244 0.97 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF317-204 - 510 6.6e-46 151.0 91.2 6 14 0.00025 0.18 12.7 3.7 1 23 249 271 249 272 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF317-204 - 510 6.6e-46 151.0 91.2 7 14 0.0011 0.82 10.7 1.0 1 23 277 299 277 300 0.88 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF317-204 - 510 6.6e-46 151.0 91.2 8 14 2.5e-05 0.018 15.9 0.3 1 23 305 327 305 328 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF317-204 - 510 6.6e-46 151.0 91.2 9 14 2.2e-06 0.0015 19.2 0.6 2 23 334 355 333 356 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF317-204 - 510 6.6e-46 151.0 91.2 10 14 0.0001 0.073 13.9 0.1 2 23 362 383 361 384 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF317-204 - 510 6.6e-46 151.0 91.2 11 14 0.00079 0.57 11.2 0.2 1 23 389 411 389 412 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF317-204 - 510 6.6e-46 151.0 91.2 12 14 4.4e-07 0.00031 21.3 0.9 2 23 418 439 417 440 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF317-204 - 510 6.6e-46 151.0 91.2 13 14 4.7e-05 0.033 15.0 0.3 1 23 445 467 445 468 0.88 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF317-204 - 510 6.6e-46 151.0 91.2 14 14 6e-07 0.00043 20.9 1.6 1 23 473 495 473 496 0.97 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF317-204 - 510 7.2e-30 102.4 97.1 1 13 6.8e-05 0.049 13.7 2.2 2 24 137 159 136 162 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF317-204 - 510 7.2e-30 102.4 97.1 2 13 2.4e-05 0.017 15.1 0.2 2 27 165 190 165 190 0.96 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF317-204 - 510 7.2e-30 102.4 97.1 3 13 9.6e-06 0.0069 16.4 0.1 2 24 193 215 193 218 0.92 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF317-204 - 510 7.2e-30 102.4 97.1 4 13 0.00014 0.098 12.7 3.9 2 24 221 243 221 246 0.95 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF317-204 - 510 7.2e-30 102.4 97.1 5 13 0.05 36 4.5 1.9 2 12 249 259 249 273 0.81 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF317-204 - 510 7.2e-30 102.4 97.1 6 13 0.0047 3.4 7.8 2.8 2 25 277 300 277 302 0.91 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF317-204 - 510 7.2e-30 102.4 97.1 7 13 3e-06 0.0021 18.0 0.5 2 24 305 327 304 327 0.91 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF317-204 - 510 7.2e-30 102.4 97.1 8 13 0.00045 0.32 11.0 0.8 3 24 334 355 334 358 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF317-204 - 510 7.2e-30 102.4 97.1 9 13 0.00012 0.084 12.9 0.4 2 24 361 383 361 386 0.91 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF317-204 - 510 7.2e-30 102.4 97.1 10 13 0.0041 2.9 8.0 0.1 1 13 388 400 388 412 0.82 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF317-204 - 510 7.2e-30 102.4 97.1 11 13 5.2e-05 0.037 14.0 1.3 3 24 418 439 418 442 0.95 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF317-204 - 510 7.2e-30 102.4 97.1 12 13 3.9e-05 0.028 14.4 0.3 2 24 445 467 445 470 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF317-204 - 510 7.2e-30 102.4 97.1 13 13 3.4e-05 0.024 14.6 1.6 2 26 473 497 473 498 0.96 C2H2-type zinc finger zf-C2H2_jaz PF12171.8 27 ZNF317-204 - 510 3.3e-19 68.7 57.1 1 13 0.0017 1.2 9.5 0.5 2 21 137 156 136 157 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF317-204 - 510 3.3e-19 68.7 57.1 2 13 0.00065 0.47 10.8 0.1 2 23 165 186 164 191 0.90 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF317-204 - 510 3.3e-19 68.7 57.1 3 13 3.4 2.5e+03 -1.1 0.0 2 22 193 213 192 213 0.85 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF317-204 - 510 3.3e-19 68.7 57.1 4 13 2.5 1.8e+03 -0.6 1.1 2 23 221 242 220 243 0.78 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF317-204 - 510 3.3e-19 68.7 57.1 5 13 0.0056 4 7.8 1.4 2 22 249 269 248 271 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF317-204 - 510 3.3e-19 68.7 57.1 6 13 1.1 8.2e+02 0.5 1.2 2 22 277 297 276 299 0.84 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF317-204 - 510 3.3e-19 68.7 57.1 7 13 0.01 7.3 7.0 0.0 2 21 305 324 304 325 0.85 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF317-204 - 510 3.3e-19 68.7 57.1 8 13 1.8e-05 0.013 15.8 0.7 4 24 335 355 333 355 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF317-204 - 510 3.3e-19 68.7 57.1 9 13 0.017 12 6.3 0.0 4 22 363 381 360 381 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF317-204 - 510 3.3e-19 68.7 57.1 10 13 0.086 62 4.0 0.0 2 13 389 400 388 409 0.77 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF317-204 - 510 3.3e-19 68.7 57.1 11 13 1.8e-05 0.013 15.7 0.4 4 24 419 439 417 439 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF317-204 - 510 3.3e-19 68.7 57.1 12 13 0.055 39 4.7 0.0 2 12 445 455 444 465 0.84 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF317-204 - 510 3.3e-19 68.7 57.1 13 13 1.6e-06 0.0011 19.1 0.1 2 24 473 495 472 496 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_11 PF16622.5 29 ZNF317-204 - 510 3e-12 46.0 63.2 1 13 3.5e-05 0.025 14.3 3.3 6 26 138 158 136 159 0.94 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF317-204 - 510 3e-12 46.0 63.2 2 13 0.23 1.6e+02 2.1 0.0 6 24 166 184 163 186 0.85 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF317-204 - 510 3e-12 46.0 63.2 3 13 0.058 42 4.0 0.2 7 26 195 214 192 215 0.91 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF317-204 - 510 3e-12 46.0 63.2 4 13 0.51 3.7e+02 1.0 0.9 5 14 221 230 219 240 0.83 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF317-204 - 510 3e-12 46.0 63.2 5 13 0.52 3.7e+02 1.0 0.2 6 23 250 267 248 269 0.78 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF317-204 - 510 3e-12 46.0 63.2 6 13 0.5 3.6e+02 1.0 0.2 7 14 279 286 276 288 0.85 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF317-204 - 510 3e-12 46.0 63.2 7 13 0.00046 0.33 10.8 0.1 3 26 303 326 302 327 0.93 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF317-204 - 510 3e-12 46.0 63.2 8 13 0.0048 3.4 7.5 0.1 6 24 334 352 332 353 0.93 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF317-204 - 510 3e-12 46.0 63.2 9 13 0.015 11 5.9 0.1 7 26 363 382 360 383 0.93 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF317-204 - 510 3e-12 46.0 63.2 10 13 0.025 18 5.2 0.4 7 25 391 409 388 411 0.91 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF317-204 - 510 3e-12 46.0 63.2 11 13 0.0018 1.3 8.8 0.7 6 25 418 437 416 438 0.94 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF317-204 - 510 3e-12 46.0 63.2 12 13 0.0005 0.36 10.6 0.1 6 26 446 466 443 467 0.94 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF317-204 - 510 3e-12 46.0 63.2 13 13 0.0015 1.1 9.1 0.2 6 24 474 492 471 494 0.92 zinc-finger C2H2-type Zn-ribbon_8 PF09723.10 40 ZNF317-204 - 510 3.1e-12 46.4 56.6 1 12 0.0099 7.1 6.8 5.1 7 34 138 172 128 175 0.83 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF317-204 - 510 3.1e-12 46.4 56.6 2 12 0.00039 0.28 11.3 2.1 6 36 165 202 163 205 0.71 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF317-204 - 510 3.1e-12 46.4 56.6 3 12 0.0026 1.9 8.7 2.3 6 35 193 229 192 234 0.78 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF317-204 - 510 3.1e-12 46.4 56.6 4 12 0.00027 0.19 11.8 4.6 6 36 249 286 248 289 0.84 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF317-204 - 510 3.1e-12 46.4 56.6 5 12 0.03 21 5.3 0.2 6 15 277 286 275 293 0.89 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF317-204 - 510 3.1e-12 46.4 56.6 6 12 3.3e-05 0.024 14.7 2.5 6 37 305 343 303 346 0.74 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF317-204 - 510 3.1e-12 46.4 56.6 7 12 0.0085 6.1 7.0 2.3 7 34 334 368 332 371 0.79 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF317-204 - 510 3.1e-12 46.4 56.6 8 12 0.16 1.1e+02 3.0 0.1 6 17 361 372 360 384 0.82 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF317-204 - 510 3.1e-12 46.4 56.6 9 12 8.8e-05 0.063 13.4 1.2 6 37 389 427 388 430 0.74 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF317-204 - 510 3.1e-12 46.4 56.6 10 12 0.0026 1.9 8.7 4.2 7 34 418 452 415 455 0.81 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF317-204 - 510 3.1e-12 46.4 56.6 11 12 0.00018 0.13 12.4 1.0 6 34 445 480 444 484 0.91 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF317-204 - 510 3.1e-12 46.4 56.6 12 12 0.082 59 3.9 0.1 6 17 473 484 471 491 0.84 Zinc ribbon domain zf-C2HE PF16278.5 64 ZNF317-204 - 510 1.2e-07 32.1 72.7 1 8 0.00025 0.18 12.3 10.3 25 61 181 215 124 218 0.86 C2HE / C2H2 / C2HC zinc-binding finger zf-C2HE PF16278.5 64 ZNF317-204 - 510 1.2e-07 32.1 72.7 2 8 0.39 2.8e+02 2.1 0.4 36 49 219 232 216 243 0.86 C2HE / C2H2 / C2HC zinc-binding finger zf-C2HE PF16278.5 64 ZNF317-204 - 510 1.2e-07 32.1 72.7 3 8 0.00054 0.39 11.2 2.3 35 62 246 272 235 274 0.88 C2HE / C2H2 / C2HC zinc-binding finger zf-C2HE PF16278.5 64 ZNF317-204 - 510 1.2e-07 32.1 72.7 4 8 0.13 90 3.6 0.2 36 47 275 286 272 293 0.85 C2HE / C2H2 / C2HC zinc-binding finger zf-C2HE PF16278.5 64 ZNF317-204 - 510 1.2e-07 32.1 72.7 5 8 0.0021 1.5 9.3 5.9 31 62 325 356 289 358 0.75 C2HE / C2H2 / C2HC zinc-binding finger zf-C2HE PF16278.5 64 ZNF317-204 - 510 1.2e-07 32.1 72.7 6 8 0.0013 0.93 10.0 3.8 29 62 409 440 371 442 0.78 C2HE / C2H2 / C2HC zinc-binding finger zf-C2HE PF16278.5 64 ZNF317-204 - 510 1.2e-07 32.1 72.7 7 8 0.97 6.9e+02 0.8 0.2 36 47 443 454 441 463 0.86 C2HE / C2H2 / C2HC zinc-binding finger zf-C2HE PF16278.5 64 ZNF317-204 - 510 1.2e-07 32.1 72.7 8 8 0.013 9.2 6.8 0.3 35 61 470 495 458 497 0.90 C2HE / C2H2 / C2HC zinc-binding finger XPA_N PF01286.18 32 ZNF317-204 - 510 2.1e-07 30.8 48.0 1 13 0.01 7.2 6.8 0.2 3 14 138 149 136 153 0.92 XPA protein N-terminal XPA_N PF01286.18 32 ZNF317-204 - 510 2.1e-07 30.8 48.0 2 13 0.019 14 5.8 0.1 3 13 166 176 164 183 0.88 XPA protein N-terminal XPA_N PF01286.18 32 ZNF317-204 - 510 2.1e-07 30.8 48.0 3 13 1 7.5e+02 0.3 0.2 3 11 194 202 192 204 0.84 XPA protein N-terminal XPA_N PF01286.18 32 ZNF317-204 - 510 2.1e-07 30.8 48.0 4 13 0.12 85 3.3 0.5 3 14 222 233 220 235 0.82 XPA protein N-terminal XPA_N PF01286.18 32 ZNF317-204 - 510 2.1e-07 30.8 48.0 5 13 0.051 36 4.5 0.1 3 12 250 259 248 264 0.90 XPA protein N-terminal XPA_N PF01286.18 32 ZNF317-204 - 510 2.1e-07 30.8 48.0 6 13 0.37 2.7e+02 1.7 0.1 4 11 279 286 277 287 0.90 XPA protein N-terminal XPA_N PF01286.18 32 ZNF317-204 - 510 2.1e-07 30.8 48.0 7 13 0.0068 4.9 7.3 0.6 3 13 306 316 305 316 0.92 XPA protein N-terminal XPA_N PF01286.18 32 ZNF317-204 - 510 2.1e-07 30.8 48.0 8 13 0.023 16 5.6 0.0 3 14 334 345 332 351 0.81 XPA protein N-terminal XPA_N PF01286.18 32 ZNF317-204 - 510 2.1e-07 30.8 48.0 9 13 0.067 48 4.1 0.1 4 14 363 373 361 377 0.91 XPA protein N-terminal XPA_N PF01286.18 32 ZNF317-204 - 510 2.1e-07 30.8 48.0 10 13 0.28 2e+02 2.1 0.0 3 13 390 400 388 405 0.88 XPA protein N-terminal XPA_N PF01286.18 32 ZNF317-204 - 510 2.1e-07 30.8 48.0 11 13 0.04 29 4.8 0.1 3 13 418 428 416 434 0.86 XPA protein N-terminal XPA_N PF01286.18 32 ZNF317-204 - 510 2.1e-07 30.8 48.0 12 13 0.023 16 5.6 0.1 3 11 446 454 444 456 0.88 XPA protein N-terminal XPA_N PF01286.18 32 ZNF317-204 - 510 2.1e-07 30.8 48.0 13 13 0.057 41 4.3 0.1 3 13 474 484 472 491 0.88 XPA protein N-terminal # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF317-204.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF317-204.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF317-204.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF317-204.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF317-204.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:03:47 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZNF317-205 - 454 4.9e-102 330.2 95.6 1 15 5.9 4.4e+03 -1.6 0.3 6 15 44 53 39 54 0.83 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF317-205 - 454 4.9e-102 330.2 95.6 2 15 0.00047 0.35 11.4 2.1 1 26 67 92 67 92 0.87 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF317-205 - 454 4.9e-102 330.2 95.6 3 15 5.8e-13 4.3e-10 39.5 0.2 1 25 95 119 95 120 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF317-205 - 454 4.9e-102 330.2 95.6 4 15 2.7e-08 2e-05 24.8 0.3 1 25 123 147 123 148 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF317-205 - 454 4.9e-102 330.2 95.6 5 15 1e-11 7.6e-09 35.6 0.2 1 25 151 175 151 176 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF317-205 - 454 4.9e-102 330.2 95.6 6 15 1.9e-09 1.4e-06 28.4 3.8 1 24 179 202 179 204 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF317-205 - 454 4.9e-102 330.2 95.6 7 15 1.2e-10 9.1e-08 32.2 1.7 1 24 207 230 207 231 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF317-205 - 454 4.9e-102 330.2 95.6 8 15 1.1e-08 7.9e-06 26.1 1.3 1 25 235 259 235 260 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF317-205 - 454 4.9e-102 330.2 95.6 9 15 1.7e-09 1.2e-06 28.6 1.2 3 26 265 288 263 288 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF317-205 - 454 4.9e-102 330.2 95.6 10 15 9.9e-10 7.4e-07 29.3 0.1 2 25 292 315 292 316 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF317-205 - 454 4.9e-102 330.2 95.6 11 15 2.3e-09 1.7e-06 28.2 0.1 1 25 319 343 319 344 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF317-205 - 454 4.9e-102 330.2 95.6 12 15 1.7e-08 1.2e-05 25.5 0.7 3 26 349 372 347 372 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF317-205 - 454 4.9e-102 330.2 95.6 13 15 3.3e-12 2.4e-09 37.2 1.9 2 25 376 399 375 399 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF317-205 - 454 4.9e-102 330.2 95.6 14 15 1.7e-11 1.3e-08 34.9 0.1 1 25 403 427 403 428 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF317-205 - 454 4.9e-102 330.2 95.6 15 15 0.0017 1.3 9.6 0.1 1 15 431 445 431 449 0.90 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZNF317-205 - 454 1.8e-68 223.4 97.7 1 14 0.23 1.7e+02 3.0 0.0 9 21 61 73 59 74 0.86 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF317-205 - 454 1.8e-68 223.4 97.7 2 14 2.8e-07 0.00021 21.6 4.5 1 23 81 103 81 103 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF317-205 - 454 1.8e-68 223.4 97.7 3 14 7.9e-10 5.9e-07 29.6 0.1 1 23 109 131 109 131 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF317-205 - 454 1.8e-68 223.4 97.7 4 14 2.7e-07 0.0002 21.6 0.2 1 23 137 159 137 159 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF317-205 - 454 1.8e-68 223.4 97.7 5 14 1.9e-06 0.0014 18.9 3.6 1 23 165 187 165 187 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF317-205 - 454 1.8e-68 223.4 97.7 6 14 2.3e-08 1.7e-05 25.0 4.4 1 23 193 215 193 215 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF317-205 - 454 1.8e-68 223.4 97.7 7 14 5.3e-05 0.04 14.4 1.2 1 23 221 243 221 243 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF317-205 - 454 1.8e-68 223.4 97.7 8 14 2.9e-07 0.00021 21.5 0.6 1 23 249 271 249 271 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF317-205 - 454 1.8e-68 223.4 97.7 9 14 7.5e-07 0.00056 20.2 1.1 2 23 278 299 277 299 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF317-205 - 454 1.8e-68 223.4 97.7 10 14 1.7e-07 0.00013 22.2 0.1 3 23 307 327 305 327 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF317-205 - 454 1.8e-68 223.4 97.7 11 14 0.00022 0.17 12.4 0.2 1 23 333 355 333 355 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF317-205 - 454 1.8e-68 223.4 97.7 12 14 7e-09 5.2e-06 26.6 1.2 2 23 362 383 361 383 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF317-205 - 454 1.8e-68 223.4 97.7 13 14 2.4e-07 0.00018 21.8 0.4 1 23 389 411 389 411 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF317-205 - 454 1.8e-68 223.4 97.7 14 14 5.4e-08 4.1e-05 23.8 1.3 1 23 417 439 417 439 0.98 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZNF317-205 - 454 1.2e-46 153.3 91.2 1 14 5.2 3.9e+03 -0.8 0.0 10 21 62 73 59 75 0.80 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF317-205 - 454 1.2e-46 153.3 91.2 2 14 4.7e-05 0.035 14.9 3.3 1 23 81 103 81 104 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF317-205 - 454 1.2e-46 153.3 91.2 3 14 6.3e-07 0.00047 20.8 0.1 1 23 109 131 109 132 0.97 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF317-205 - 454 1.2e-46 153.3 91.2 4 14 1.4e-05 0.011 16.5 0.3 3 23 139 159 137 160 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF317-205 - 454 1.2e-46 153.3 91.2 5 14 3.3e-05 0.025 15.4 2.7 1 23 165 187 165 188 0.97 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF317-205 - 454 1.2e-46 153.3 91.2 6 14 0.00021 0.16 12.9 3.7 1 23 193 215 193 216 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF317-205 - 454 1.2e-46 153.3 91.2 7 14 0.00095 0.71 10.9 1.0 1 23 221 243 221 244 0.88 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF317-205 - 454 1.2e-46 153.3 91.2 8 14 2e-05 0.015 16.1 0.3 1 23 249 271 249 272 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF317-205 - 454 1.2e-46 153.3 91.2 9 14 1.8e-06 0.0013 19.3 0.6 2 23 278 299 277 300 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF317-205 - 454 1.2e-46 153.3 91.2 10 14 8.5e-05 0.063 14.1 0.1 2 23 306 327 305 328 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF317-205 - 454 1.2e-46 153.3 91.2 11 14 0.00066 0.49 11.4 0.2 1 23 333 355 333 356 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF317-205 - 454 1.2e-46 153.3 91.2 12 14 3.6e-07 0.00027 21.5 0.9 2 23 362 383 361 384 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF317-205 - 454 1.2e-46 153.3 91.2 13 14 3.9e-05 0.029 15.2 0.3 1 23 389 411 389 412 0.88 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF317-205 - 454 1.2e-46 153.3 91.2 14 14 5e-07 0.00037 21.1 1.6 1 23 417 439 417 440 0.97 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF317-205 - 454 1.2e-30 104.9 97.1 1 14 9.3 7e+03 -2.8 0.3 20 26 67 73 67 73 0.85 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF317-205 - 454 1.2e-30 104.9 97.1 2 14 5.7e-05 0.042 13.8 2.2 2 24 81 103 80 106 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF317-205 - 454 1.2e-30 104.9 97.1 3 14 2e-05 0.015 15.3 0.2 2 27 109 134 109 134 0.96 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF317-205 - 454 1.2e-30 104.9 97.1 4 14 8e-06 0.006 16.6 0.1 2 24 137 159 137 162 0.92 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF317-205 - 454 1.2e-30 104.9 97.1 5 14 0.00011 0.085 12.9 3.9 2 24 165 187 165 190 0.95 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF317-205 - 454 1.2e-30 104.9 97.1 6 14 0.042 32 4.7 1.9 2 12 193 203 193 217 0.81 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF317-205 - 454 1.2e-30 104.9 97.1 7 14 0.0039 2.9 8.0 2.7 2 25 221 244 221 246 0.91 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF317-205 - 454 1.2e-30 104.9 97.1 8 14 2.5e-06 0.0019 18.2 0.5 2 24 249 271 248 271 0.91 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF317-205 - 454 1.2e-30 104.9 97.1 9 14 0.00037 0.28 11.2 0.8 3 24 278 299 278 302 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF317-205 - 454 1.2e-30 104.9 97.1 10 14 9.7e-05 0.073 13.1 0.4 2 24 305 327 305 330 0.91 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF317-205 - 454 1.2e-30 104.9 97.1 11 14 0.0034 2.6 8.2 0.1 1 13 332 344 332 356 0.82 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF317-205 - 454 1.2e-30 104.9 97.1 12 14 4.4e-05 0.033 14.2 1.3 3 24 362 383 362 386 0.95 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF317-205 - 454 1.2e-30 104.9 97.1 13 14 3.3e-05 0.024 14.6 0.3 2 24 389 411 389 414 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF317-205 - 454 1.2e-30 104.9 97.1 14 14 2.8e-05 0.021 14.8 1.6 2 26 417 441 417 442 0.96 C2H2-type zinc finger zf-C2H2_jaz PF12171.8 27 ZNF317-205 - 454 6.2e-20 71.0 57.1 1 13 0.0014 1 9.7 0.5 2 21 81 100 80 101 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF317-205 - 454 6.2e-20 71.0 57.1 2 13 0.00054 0.41 11.0 0.1 2 23 109 130 108 135 0.90 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF317-205 - 454 6.2e-20 71.0 57.1 3 13 2.9 2.2e+03 -0.9 0.0 2 22 137 157 136 157 0.85 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF317-205 - 454 6.2e-20 71.0 57.1 4 13 2.1 1.6e+03 -0.4 1.1 2 23 165 186 164 187 0.79 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF317-205 - 454 6.2e-20 71.0 57.1 5 13 0.0047 3.5 8.0 1.4 2 22 193 213 192 215 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF317-205 - 454 6.2e-20 71.0 57.1 6 13 0.95 7.1e+02 0.7 1.2 2 22 221 241 220 243 0.84 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF317-205 - 454 6.2e-20 71.0 57.1 7 13 0.0085 6.4 7.2 0.0 2 21 249 268 248 269 0.85 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF317-205 - 454 6.2e-20 71.0 57.1 8 13 1.5e-05 0.011 16.0 0.7 4 24 279 299 277 299 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF317-205 - 454 6.2e-20 71.0 57.1 9 13 0.014 11 6.5 0.0 4 22 307 325 304 325 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF317-205 - 454 6.2e-20 71.0 57.1 10 13 0.072 54 4.2 0.0 2 13 333 344 332 353 0.77 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF317-205 - 454 6.2e-20 71.0 57.1 11 13 1.5e-05 0.012 15.9 0.4 4 24 363 383 361 383 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF317-205 - 454 6.2e-20 71.0 57.1 12 13 0.046 34 4.9 0.0 2 12 389 399 388 409 0.84 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF317-205 - 454 6.2e-20 71.0 57.1 13 13 1.3e-06 0.00099 19.3 0.1 2 24 417 439 416 440 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_11 PF16622.5 29 ZNF317-205 - 454 5.7e-13 48.4 63.2 1 13 3e-05 0.022 14.5 3.3 6 26 82 102 80 103 0.94 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF317-205 - 454 5.7e-13 48.4 63.2 2 13 0.19 1.4e+02 2.3 0.0 6 24 110 128 107 130 0.85 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF317-205 - 454 5.7e-13 48.4 63.2 3 13 0.049 37 4.2 0.2 7 26 139 158 136 159 0.91 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF317-205 - 454 5.7e-13 48.4 63.2 4 13 0.43 3.2e+02 1.2 0.9 5 14 165 174 163 184 0.83 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF317-205 - 454 5.7e-13 48.4 63.2 5 13 0.43 3.2e+02 1.2 0.2 6 23 194 211 192 213 0.78 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF317-205 - 454 5.7e-13 48.4 63.2 6 13 0.42 3.2e+02 1.2 0.2 7 14 223 230 220 232 0.85 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF317-205 - 454 5.7e-13 48.4 63.2 7 13 0.00038 0.29 10.9 0.1 3 26 247 270 246 271 0.93 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF317-205 - 454 5.7e-13 48.4 63.2 8 13 0.004 3 7.7 0.1 6 24 278 296 276 297 0.93 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF317-205 - 454 5.7e-13 48.4 63.2 9 13 0.013 9.6 6.1 0.1 7 26 307 326 304 327 0.93 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF317-205 - 454 5.7e-13 48.4 63.2 10 13 0.021 16 5.4 0.4 7 25 335 353 332 355 0.91 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF317-205 - 454 5.7e-13 48.4 63.2 11 13 0.0015 1.1 9.0 0.7 6 25 362 381 360 382 0.94 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF317-205 - 454 5.7e-13 48.4 63.2 12 13 0.00042 0.31 10.8 0.1 6 26 390 410 387 411 0.94 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF317-205 - 454 5.7e-13 48.4 63.2 13 13 0.0013 0.94 9.3 0.2 6 24 418 436 415 438 0.92 zinc-finger C2H2-type Zn-ribbon_8 PF09723.10 40 ZNF317-205 - 454 1.8e-12 47.1 57.7 1 12 0.0099 7.4 6.8 5.1 7 34 82 116 72 118 0.83 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF317-205 - 454 1.8e-12 47.1 57.7 2 12 0.00053 0.39 10.9 2.5 6 35 109 145 107 148 0.71 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF317-205 - 454 1.8e-12 47.1 57.7 3 12 0.0015 1.2 9.4 1.8 6 35 137 173 136 177 0.78 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF317-205 - 454 1.8e-12 47.1 57.7 4 12 0.00021 0.16 12.2 4.6 6 36 193 230 192 233 0.84 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF317-205 - 454 1.8e-12 47.1 57.7 5 12 0.025 19 5.5 0.2 6 15 221 230 219 237 0.89 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF317-205 - 454 1.8e-12 47.1 57.7 6 12 3.2e-05 0.024 14.7 2.7 6 37 249 287 247 290 0.74 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF317-205 - 454 1.8e-12 47.1 57.7 7 12 0.006 4.5 7.5 2.2 7 34 278 312 276 316 0.79 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF317-205 - 454 1.8e-12 47.1 57.7 8 12 0.13 99 3.2 0.1 6 17 305 316 304 328 0.82 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF317-205 - 454 1.8e-12 47.1 57.7 9 12 0.0001 0.076 13.1 1.6 6 37 333 371 332 374 0.74 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF317-205 - 454 1.8e-12 47.1 57.7 10 12 0.0025 1.9 8.7 4.4 7 34 362 396 359 399 0.81 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF317-205 - 454 1.8e-12 47.1 57.7 11 12 0.00017 0.13 12.4 1.2 6 34 389 424 388 428 0.91 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF317-205 - 454 1.8e-12 47.1 57.7 12 12 0.069 52 4.1 0.1 6 17 417 428 415 435 0.84 Zinc ribbon domain zf-C2HE PF16278.5 64 ZNF317-205 - 454 4.1e-09 36.8 69.5 1 10 0.65 4.8e+02 1.3 2.0 39 54 82 96 65 104 0.77 C2HE / C2H2 / C2HC zinc-binding finger zf-C2HE PF16278.5 64 ZNF317-205 - 454 4.1e-09 36.8 69.5 2 10 0.018 14 6.2 0.3 35 63 106 133 93 134 0.88 C2HE / C2H2 / C2HC zinc-binding finger zf-C2HE PF16278.5 64 ZNF317-205 - 454 4.1e-09 36.8 69.5 3 10 3.4e-07 0.00026 21.4 0.3 29 61 129 159 122 162 0.83 C2HE / C2H2 / C2HC zinc-binding finger zf-C2HE PF16278.5 64 ZNF317-205 - 454 4.1e-09 36.8 69.5 4 10 0.33 2.5e+02 2.2 0.4 36 49 163 176 160 187 0.86 C2HE / C2H2 / C2HC zinc-binding finger zf-C2HE PF16278.5 64 ZNF317-205 - 454 4.1e-09 36.8 69.5 5 10 0.00054 0.4 11.2 2.5 35 62 190 216 179 218 0.88 C2HE / C2H2 / C2HC zinc-binding finger zf-C2HE PF16278.5 64 ZNF317-205 - 454 4.1e-09 36.8 69.5 6 10 0.11 85 3.7 0.2 36 47 219 230 217 237 0.85 C2HE / C2H2 / C2HC zinc-binding finger zf-C2HE PF16278.5 64 ZNF317-205 - 454 4.1e-09 36.8 69.5 7 10 0.0016 1.2 9.6 5.7 31 62 269 300 233 302 0.75 C2HE / C2H2 / C2HC zinc-binding finger zf-C2HE PF16278.5 64 ZNF317-205 - 454 4.1e-09 36.8 69.5 8 10 0.0011 0.81 10.2 3.8 29 62 353 384 315 386 0.78 C2HE / C2H2 / C2HC zinc-binding finger zf-C2HE PF16278.5 64 ZNF317-205 - 454 4.1e-09 36.8 69.5 9 10 0.81 6e+02 1.0 0.2 36 47 387 398 385 407 0.86 C2HE / C2H2 / C2HC zinc-binding finger zf-C2HE PF16278.5 64 ZNF317-205 - 454 4.1e-09 36.8 69.5 10 10 0.011 8 7.0 0.3 35 61 414 439 402 441 0.90 C2HE / C2H2 / C2HC zinc-binding finger XPA_N PF01286.18 32 ZNF317-205 - 454 4.3e-08 33.1 48.0 1 13 0.0084 6.3 6.9 0.2 3 14 82 93 80 97 0.92 XPA protein N-terminal XPA_N PF01286.18 32 ZNF317-205 - 454 4.3e-08 33.1 48.0 2 13 0.016 12 6.0 0.1 3 13 110 120 108 127 0.88 XPA protein N-terminal XPA_N PF01286.18 32 ZNF317-205 - 454 4.3e-08 33.1 48.0 3 13 0.88 6.5e+02 0.5 0.2 3 11 138 146 136 148 0.84 XPA protein N-terminal XPA_N PF01286.18 32 ZNF317-205 - 454 4.3e-08 33.1 48.0 4 13 0.1 75 3.5 0.5 3 14 166 177 164 179 0.82 XPA protein N-terminal XPA_N PF01286.18 32 ZNF317-205 - 454 4.3e-08 33.1 48.0 5 13 0.043 32 4.7 0.1 3 12 194 203 192 208 0.90 XPA protein N-terminal XPA_N PF01286.18 32 ZNF317-205 - 454 4.3e-08 33.1 48.0 6 13 0.32 2.4e+02 1.9 0.1 4 11 223 230 221 231 0.90 XPA protein N-terminal XPA_N PF01286.18 32 ZNF317-205 - 454 4.3e-08 33.1 48.0 7 13 0.0057 4.3 7.5 0.6 3 13 250 260 249 260 0.92 XPA protein N-terminal XPA_N PF01286.18 32 ZNF317-205 - 454 4.3e-08 33.1 48.0 8 13 0.019 14 5.8 0.0 3 14 278 289 276 295 0.81 XPA protein N-terminal XPA_N PF01286.18 32 ZNF317-205 - 454 4.3e-08 33.1 48.0 9 13 0.057 42 4.3 0.1 4 14 307 317 305 321 0.91 XPA protein N-terminal XPA_N PF01286.18 32 ZNF317-205 - 454 4.3e-08 33.1 48.0 10 13 0.23 1.8e+02 2.3 0.0 3 13 334 344 332 349 0.88 XPA protein N-terminal XPA_N PF01286.18 32 ZNF317-205 - 454 4.3e-08 33.1 48.0 11 13 0.034 25 5.0 0.1 3 13 362 372 360 378 0.86 XPA protein N-terminal XPA_N PF01286.18 32 ZNF317-205 - 454 4.3e-08 33.1 48.0 12 13 0.019 14 5.8 0.1 3 11 390 398 388 400 0.88 XPA protein N-terminal XPA_N PF01286.18 32 ZNF317-205 - 454 4.3e-08 33.1 48.0 13 13 0.048 36 4.5 0.1 3 13 418 428 416 435 0.88 XPA protein N-terminal zf-met PF12874.7 25 ZNF317-205 - 454 3.9e-07 30.2 65.2 1 12 9.8 7.3e+03 -2.4 0.0 10 20 62 72 60 73 0.82 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF317-205 - 454 3.9e-07 30.2 65.2 2 12 1.2 9.3e+02 0.4 1.4 6 19 86 99 81 104 0.83 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF317-205 - 454 3.9e-07 30.2 65.2 3 12 5.8e-05 0.043 14.2 0.1 1 21 109 129 109 131 0.92 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF317-205 - 454 3.9e-07 30.2 65.2 4 12 8.1 6.1e+03 -2.1 0.0 14 21 150 157 146 159 0.80 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF317-205 - 454 3.9e-07 30.2 65.2 5 12 0.0033 2.4 8.6 0.7 1 20 193 212 193 213 0.93 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF317-205 - 454 3.9e-07 30.2 65.2 6 12 0.02 15 6.1 0.1 1 21 249 269 249 271 0.92 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF317-205 - 454 3.9e-07 30.2 65.2 7 12 0.00025 0.19 12.2 1.3 5 23 281 299 278 300 0.89 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF317-205 - 454 3.9e-07 30.2 65.2 8 12 0.036 27 5.3 0.2 3 19 307 323 305 328 0.88 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF317-205 - 454 3.9e-07 30.2 65.2 9 12 0.24 1.8e+02 2.7 0.0 1 10 333 342 333 353 0.88 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF317-205 - 454 3.9e-07 30.2 65.2 10 12 0.00091 0.68 10.4 1.1 6 23 366 383 362 384 0.89 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF317-205 - 454 3.9e-07 30.2 65.2 11 12 2.2 1.6e+03 -0.3 0.1 1 10 389 398 389 407 0.87 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF317-205 - 454 3.9e-07 30.2 65.2 12 12 0.00021 0.16 12.4 0.8 1 22 417 438 417 440 0.90 Zinc-finger of C2H2 type zinc_ribbon_15 PF17032.5 86 ZNF317-205 - 454 4.8e-07 30.4 48.3 1 10 0.26 1.9e+02 2.9 0.3 55 77 70 92 58 98 0.68 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF317-205 - 454 4.8e-07 30.4 48.3 2 10 0.0015 1.1 10.1 1.8 34 76 77 119 67 127 0.87 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF317-205 - 454 4.8e-07 30.4 48.3 3 10 0.0019 1.4 9.7 0.7 33 75 104 146 99 151 0.87 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF317-205 - 454 4.8e-07 30.4 48.3 4 10 0.0056 4.2 8.2 5.2 30 76 157 203 139 207 0.82 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF317-205 - 454 4.8e-07 30.4 48.3 5 10 0.00039 0.29 11.9 2.0 33 81 188 236 177 239 0.85 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF317-205 - 454 4.8e-07 30.4 48.3 6 10 0.003 2.2 9.1 2.2 35 74 218 257 210 264 0.82 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF317-205 - 454 4.8e-07 30.4 48.3 7 10 0.019 14 6.5 2.9 36 78 247 289 240 291 0.85 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF317-205 - 454 4.8e-07 30.4 48.3 8 10 0.02 15 6.4 4.1 33 73 300 340 277 347 0.59 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF317-205 - 454 4.8e-07 30.4 48.3 9 10 0.00024 0.18 12.6 1.9 35 75 358 398 351 404 0.89 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF317-205 - 454 4.8e-07 30.4 48.3 10 10 2 1.5e+03 0.0 0.0 33 59 412 438 404 444 0.74 zinc-ribbon family zf-C2H2_2 PF12756.7 101 ZNF317-205 - 454 8.7e-07 29.2 60.2 1 9 0.11 79 3.7 2.1 41 69 74 99 53 104 0.75 C2H2 type zinc-finger (2 copies) zf-C2H2_2 PF12756.7 101 ZNF317-205 - 454 8.7e-07 29.2 60.2 2 9 0.07 52 4.3 0.0 51 72 109 130 101 136 0.85 C2H2 type zinc-finger (2 copies) zf-C2H2_2 PF12756.7 101 ZNF317-205 - 454 8.7e-07 29.2 60.2 3 9 0.0084 6.3 7.2 0.3 51 72 137 158 130 169 0.85 C2H2 type zinc-finger (2 copies) zf-C2H2_2 PF12756.7 101 ZNF317-205 - 454 8.7e-07 29.2 60.2 4 9 0.63 4.7e+02 1.2 4.4 50 73 192 215 176 236 0.83 C2H2 type zinc-finger (2 copies) zf-C2H2_2 PF12756.7 101 ZNF317-205 - 454 8.7e-07 29.2 60.2 5 9 1.9 1.4e+03 -0.4 1.3 50 75 220 243 210 247 0.67 C2H2 type zinc-finger (2 copies) zf-C2H2_2 PF12756.7 101 ZNF317-205 - 454 8.7e-07 29.2 60.2 6 9 0.003 2.2 8.7 1.0 43 71 241 269 232 274 0.89 C2H2 type zinc-finger (2 copies) zf-C2H2_2 PF12756.7 101 ZNF317-205 - 454 8.7e-07 29.2 60.2 7 9 0.00086 0.64 10.4 0.7 47 73 273 299 269 305 0.87 C2H2 type zinc-finger (2 copies) zf-C2H2_2 PF12756.7 101 ZNF317-205 - 454 8.7e-07 29.2 60.2 8 9 0.029 22 5.5 9.5 45 74 355 384 307 399 0.86 C2H2 type zinc-finger (2 copies) zf-C2H2_2 PF12756.7 101 ZNF317-205 - 454 8.7e-07 29.2 60.2 9 9 0.00026 0.19 12.0 0.3 50 74 416 440 402 452 0.83 C2H2 type zinc-finger (2 copies) # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF317-205.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF317-205.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF317-205.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF317-205.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF317-205.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:03:48 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF317-206.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF317-206.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF317-206.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF317-206.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF317-206.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:03:48 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-C2H2 PF00096.26 23 ZNF319-201 - 582 2.6e-59 194.5 133.5 1 17 2.5 3.4e+03 -1.1 1.4 2 14 77 89 77 100 0.73 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF319-201 - 582 2.6e-59 194.5 133.5 2 17 0.0025 3.4 8.3 1.2 1 21 104 124 104 125 0.95 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF319-201 - 582 2.6e-59 194.5 133.5 3 17 0.00024 0.33 11.5 0.7 1 23 132 154 132 154 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF319-201 - 582 2.6e-59 194.5 133.5 4 17 0.073 1e+02 3.7 0.1 2 11 159 168 158 172 0.88 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF319-201 - 582 2.6e-59 194.5 133.5 5 17 3.1e-08 4.3e-05 23.7 1.5 1 23 202 224 202 224 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF319-201 - 582 2.6e-59 194.5 133.5 6 17 2.8e-08 3.8e-05 23.9 6.9 1 23 230 252 230 252 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF319-201 - 582 2.6e-59 194.5 133.5 7 17 1.2e-07 0.00017 21.9 4.7 1 23 258 280 258 280 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF319-201 - 582 2.6e-59 194.5 133.5 8 17 0.00061 0.84 10.2 0.7 1 19 287 305 287 305 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF319-201 - 582 2.6e-59 194.5 133.5 9 17 2e-09 2.8e-06 27.5 0.9 1 23 315 337 315 337 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF319-201 - 582 2.6e-59 194.5 133.5 10 17 1.8e-08 2.5e-05 24.5 1.3 1 23 343 365 343 365 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF319-201 - 582 2.6e-59 194.5 133.5 11 17 9.2e-06 0.013 15.9 2.0 1 23 371 393 371 393 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF319-201 - 582 2.6e-59 194.5 133.5 12 17 1.6e-05 0.022 15.2 0.7 1 20 399 418 399 420 0.94 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF319-201 - 582 2.6e-59 194.5 133.5 13 17 1.7e-08 2.3e-05 24.6 0.3 1 23 428 450 428 450 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF319-201 - 582 2.6e-59 194.5 133.5 14 17 0.0016 2.2 8.9 2.2 2 20 459 477 458 479 0.93 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF319-201 - 582 2.6e-59 194.5 133.5 15 17 5.5e-09 7.6e-06 26.1 1.0 2 23 487 508 486 508 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF319-201 - 582 2.6e-59 194.5 133.5 16 17 1e-08 1.4e-05 25.2 1.7 1 23 514 536 514 536 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF319-201 - 582 2.6e-59 194.5 133.5 17 17 0.011 15 6.3 0.0 1 23 542 564 542 564 0.86 Zinc finger, C2H2 type zf-H2C2_2 PF13465.6 26 ZNF319-201 - 582 3.6e-53 175.7 129.4 1 16 0.16 2.1e+02 2.6 0.9 14 24 103 113 86 115 0.75 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF319-201 - 582 3.6e-53 175.7 129.4 2 16 0.066 91 3.7 0.3 12 24 129 141 119 142 0.85 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF319-201 - 582 3.6e-53 175.7 129.4 3 16 0.012 16 6.1 0.7 4 25 149 168 146 168 0.73 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF319-201 - 582 3.6e-53 175.7 129.4 4 16 0.0078 11 6.7 1.3 12 26 199 213 197 213 0.90 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF319-201 - 582 3.6e-53 175.7 129.4 5 16 2.8e-13 3.9e-10 39.7 0.7 2 25 217 240 216 241 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF319-201 - 582 3.6e-53 175.7 129.4 6 16 1.4e-07 0.00019 21.7 8.1 1 26 244 269 244 269 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF319-201 - 582 3.6e-53 175.7 129.4 7 16 0.0031 4.2 8.0 5.5 1 25 272 297 272 298 0.89 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF319-201 - 582 3.6e-53 175.7 129.4 8 16 0.0002 0.28 11.7 1.3 11 26 311 326 303 326 0.86 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF319-201 - 582 3.6e-53 175.7 129.4 9 16 5.2e-09 7.1e-06 26.2 0.3 1 26 329 354 329 354 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF319-201 - 582 3.6e-53 175.7 129.4 10 16 2.1e-08 3e-05 24.3 0.6 1 25 357 381 357 382 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF319-201 - 582 3.6e-53 175.7 129.4 11 16 4.6e-06 0.0064 16.9 1.9 1 25 385 409 385 410 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF319-201 - 582 3.6e-53 175.7 129.4 12 16 2.1e-05 0.028 14.8 1.7 12 26 425 439 416 439 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF319-201 - 582 3.6e-53 175.7 129.4 13 16 0.0095 13 6.4 0.4 12 24 455 467 442 469 0.82 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF319-201 - 582 3.6e-53 175.7 129.4 14 16 0.00013 0.18 12.3 2.6 12 26 483 497 475 497 0.90 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF319-201 - 582 3.6e-53 175.7 129.4 15 16 9.1e-15 1.3e-11 44.4 1.1 1 26 500 525 500 525 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF319-201 - 582 3.6e-53 175.7 129.4 16 16 0.0024 3.4 8.3 0.4 1 24 528 551 528 552 0.92 Zinc-finger double domain zf-C2H2_4 PF13894.6 24 ZNF319-201 - 582 6.1e-41 135.5 125.1 1 17 6 8.3e+03 -1.8 0.2 2 7 77 82 76 92 0.76 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF319-201 - 582 6.1e-41 135.5 125.1 2 17 0.0037 5.1 8.2 0.5 1 19 104 122 104 123 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF319-201 - 582 6.1e-41 135.5 125.1 3 17 0.0032 4.4 8.4 1.1 1 23 132 154 132 155 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF319-201 - 582 6.1e-41 135.5 125.1 4 17 0.093 1.3e+02 3.9 0.2 2 11 159 168 158 171 0.89 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF319-201 - 582 6.1e-41 135.5 125.1 5 17 3.3e-06 0.0046 17.7 1.4 1 23 202 224 202 225 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF319-201 - 582 6.1e-41 135.5 125.1 6 17 4.8e-06 0.0066 17.2 5.8 1 23 230 252 230 253 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF319-201 - 582 6.1e-41 135.5 125.1 7 17 5.3e-05 0.073 13.9 4.5 1 23 258 280 258 281 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF319-201 - 582 6.1e-41 135.5 125.1 8 17 0.0035 4.8 8.3 0.9 1 19 287 305 287 305 0.97 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF319-201 - 582 6.1e-41 135.5 125.1 9 17 1.1e-06 0.0016 19.1 0.8 1 23 315 337 315 338 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF319-201 - 582 6.1e-41 135.5 125.1 10 17 1.5e-06 0.0021 18.8 1.1 1 23 343 365 343 366 0.97 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF319-201 - 582 6.1e-41 135.5 125.1 11 17 0.00068 0.94 10.5 2.1 1 23 371 393 371 394 0.91 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF319-201 - 582 6.1e-41 135.5 125.1 12 17 2.6e-05 0.036 14.9 0.2 1 19 399 417 399 418 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF319-201 - 582 6.1e-41 135.5 125.1 13 17 1.4e-06 0.0019 18.9 0.4 1 23 428 450 428 450 0.97 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF319-201 - 582 6.1e-41 135.5 125.1 14 17 0.00059 0.81 10.7 1.0 2 19 459 476 458 477 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF319-201 - 582 6.1e-41 135.5 125.1 15 17 2.9e-06 0.004 17.9 0.8 2 23 487 508 486 509 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF319-201 - 582 6.1e-41 135.5 125.1 16 17 4e-05 0.055 14.3 0.9 1 23 514 536 514 537 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF319-201 - 582 6.1e-41 135.5 125.1 17 17 0.00015 0.21 12.5 0.2 1 23 542 564 542 565 0.95 C2H2-type zinc finger zf-C2H2_jaz PF12171.8 27 ZNF319-201 - 582 3.7e-28 97.2 74.7 1 16 1.6 2.3e+03 -0.9 1.1 2 20 104 122 103 123 0.88 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF319-201 - 582 3.7e-28 97.2 74.7 2 16 0.76 1e+03 0.1 0.1 2 12 132 142 131 155 0.74 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF319-201 - 582 3.7e-28 97.2 74.7 3 16 0.099 1.4e+02 3.0 0.2 4 12 160 168 158 173 0.89 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF319-201 - 582 3.7e-28 97.2 74.7 4 16 0.0004 0.55 10.6 0.1 2 22 202 222 201 222 0.91 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF319-201 - 582 3.7e-28 97.2 74.7 5 16 0.0004 0.55 10.6 2.6 2 24 230 252 229 253 0.91 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF319-201 - 582 3.7e-28 97.2 74.7 6 16 0.00013 0.18 12.1 1.0 2 21 258 277 257 278 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF319-201 - 582 3.7e-28 97.2 74.7 7 16 0.0023 3.2 8.2 0.5 2 20 287 305 286 305 0.96 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF319-201 - 582 3.7e-28 97.2 74.7 8 16 8.8e-07 0.0012 19.0 0.1 2 24 315 337 314 338 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF319-201 - 582 3.7e-28 97.2 74.7 9 16 1.9e-05 0.026 14.8 0.1 2 25 343 366 342 366 0.96 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF319-201 - 582 3.7e-28 97.2 74.7 10 16 0.021 28 5.1 0.2 2 17 371 386 370 391 0.76 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF319-201 - 582 3.7e-28 97.2 74.7 11 16 0.0013 1.8 8.9 0.1 2 20 399 417 398 418 0.88 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF319-201 - 582 3.7e-28 97.2 74.7 12 16 1.4e-06 0.0019 18.5 0.1 2 21 428 447 427 448 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF319-201 - 582 3.7e-28 97.2 74.7 13 16 0.00019 0.27 11.6 0.0 3 20 459 476 457 477 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF319-201 - 582 3.7e-28 97.2 74.7 14 16 0.0014 1.9 8.9 0.0 2 21 486 505 485 506 0.91 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF319-201 - 582 3.7e-28 97.2 74.7 15 16 0.0028 3.8 7.9 1.4 2 20 514 532 513 533 0.90 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF319-201 - 582 3.7e-28 97.2 74.7 16 16 0.21 2.9e+02 1.9 0.1 1 20 541 560 541 560 0.94 Zinc-finger double-stranded RNA-binding zf-met PF12874.7 25 ZNF319-201 - 582 2.8e-16 59.3 73.2 1 14 0.041 56 4.3 0.3 1 19 132 150 132 154 0.78 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF319-201 - 582 2.8e-16 59.3 73.2 2 14 0.2 2.7e+02 2.1 0.9 2 11 159 168 158 168 0.86 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF319-201 - 582 2.8e-16 59.3 73.2 3 14 0.00022 0.31 11.5 0.3 1 21 202 222 202 225 0.91 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF319-201 - 582 2.8e-16 59.3 73.2 4 14 0.0016 2.2 8.8 0.9 1 16 230 245 230 252 0.84 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF319-201 - 582 2.8e-16 59.3 73.2 5 14 1.8e-05 0.025 15.0 2.3 1 20 258 277 258 280 0.93 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF319-201 - 582 2.8e-16 59.3 73.2 6 14 0.13 1.8e+02 2.7 0.6 1 19 287 305 287 305 0.85 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF319-201 - 582 2.8e-16 59.3 73.2 7 14 5.5e-05 0.076 13.4 0.1 1 21 315 335 315 337 0.93 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF319-201 - 582 2.8e-16 59.3 73.2 8 14 0.028 39 4.8 0.2 1 23 343 365 343 366 0.87 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF319-201 - 582 2.8e-16 59.3 73.2 9 14 0.023 32 5.1 0.1 1 19 371 389 371 391 0.87 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF319-201 - 582 2.8e-16 59.3 73.2 10 14 0.022 30 5.2 0.1 1 10 399 408 399 418 0.77 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF319-201 - 582 2.8e-16 59.3 73.2 11 14 6.9e-05 0.096 13.1 0.2 1 19 428 446 428 448 0.95 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF319-201 - 582 2.8e-16 59.3 73.2 12 14 0.0028 3.9 8.0 0.2 2 19 459 476 458 477 0.93 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF319-201 - 582 2.8e-16 59.3 73.2 13 14 0.0037 5.1 7.6 0.1 2 19 487 504 486 508 0.92 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF319-201 - 582 2.8e-16 59.3 73.2 14 14 0.13 1.7e+02 2.8 0.3 1 19 514 532 514 534 0.90 Zinc-finger of C2H2 type zf-Di19 PF05605.12 54 ZNF319-201 - 582 1.2e-07 31.9 99.2 1 11 0.0075 10 6.5 5.9 2 40 103 140 102 150 0.83 Drought induced 19 protein (Di19), zinc-binding zf-Di19 PF05605.12 54 ZNF319-201 - 582 1.2e-07 31.9 99.2 2 11 0.0019 2.6 8.4 0.6 17 41 143 167 140 174 0.84 Drought induced 19 protein (Di19), zinc-binding zf-Di19 PF05605.12 54 ZNF319-201 - 582 1.2e-07 31.9 99.2 3 11 0.0021 2.8 8.3 7.3 3 48 202 248 200 253 0.73 Drought induced 19 protein (Di19), zinc-binding zf-Di19 PF05605.12 54 ZNF319-201 - 582 1.2e-07 31.9 99.2 4 11 0.00051 0.71 10.2 8.9 3 49 230 277 228 278 0.82 Drought induced 19 protein (Di19), zinc-binding zf-Di19 PF05605.12 54 ZNF319-201 - 582 1.2e-07 31.9 99.2 5 11 0.0051 7.1 7.0 9.0 3 48 258 305 256 308 0.80 Drought induced 19 protein (Di19), zinc-binding zf-Di19 PF05605.12 54 ZNF319-201 - 582 1.2e-07 31.9 99.2 6 11 0.27 3.8e+02 1.5 1.7 3 40 315 351 313 367 0.67 Drought induced 19 protein (Di19), zinc-binding zf-Di19 PF05605.12 54 ZNF319-201 - 582 1.2e-07 31.9 99.2 7 11 0.053 73 3.8 2.9 3 42 343 381 341 395 0.73 Drought induced 19 protein (Di19), zinc-binding zf-Di19 PF05605.12 54 ZNF319-201 - 582 1.2e-07 31.9 99.2 8 11 0.00082 1.1 9.6 0.3 3 20 399 417 397 419 0.80 Drought induced 19 protein (Di19), zinc-binding zf-Di19 PF05605.12 54 ZNF319-201 - 582 1.2e-07 31.9 99.2 9 11 4.2e-06 0.0057 16.9 5.6 3 48 428 476 426 478 0.79 Drought induced 19 protein (Di19), zinc-binding zf-Di19 PF05605.12 54 ZNF319-201 - 582 1.2e-07 31.9 99.2 10 11 0.00064 0.88 9.9 3.6 3 49 486 529 484 538 0.73 Drought induced 19 protein (Di19), zinc-binding zf-Di19 PF05605.12 54 ZNF319-201 - 582 1.2e-07 31.9 99.2 11 11 0.00068 0.93 9.8 0.0 1 28 540 567 540 571 0.75 Drought induced 19 protein (Di19), zinc-binding # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF319-201.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF319-201.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF319-201.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF319-201.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF319-201.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:03:49 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF319-202.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF319-202.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF319-202.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF319-202.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF319-202.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:03:49 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF3-201.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF3-201.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF3-201.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF3-201.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF3-201.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:03:49 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF320-201.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF320-201.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF320-201.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF320-201.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF320-201.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:03:50 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF320-202.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF320-202.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF320-202.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF320-202.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF320-202.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:03:50 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- KRAB PF01352.27 42 ZNF320-203 - 81 2.4e-20 71.9 0.1 1 1 3.5e-24 3.1e-20 71.5 0.1 2 42 8 48 7 48 0.98 KRAB box # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF320-203.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF320-203.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF320-203.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF320-203.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF320-203.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:03:50 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZNF320-204 - 509 7.4e-92 298.0 116.5 1 12 1.9e-11 1.5e-08 34.7 5.3 1 25 147 171 147 172 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF320-204 - 509 7.4e-92 298.0 116.5 2 12 6.2e-11 4.9e-08 33.1 2.9 1 26 175 200 175 200 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF320-204 - 509 7.4e-92 298.0 116.5 3 12 2.8e-08 2.2e-05 24.7 2.1 1 25 203 227 203 228 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF320-204 - 509 7.4e-92 298.0 116.5 4 12 6.7e-08 5.2e-05 23.5 6.8 5 25 235 255 234 256 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF320-204 - 509 7.4e-92 298.0 116.5 5 12 1.4e-10 1.1e-07 31.9 4.5 1 25 259 283 259 284 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF320-204 - 509 7.4e-92 298.0 116.5 6 12 4.2e-09 3.3e-06 27.3 0.6 3 26 289 312 288 312 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF320-204 - 509 7.4e-92 298.0 116.5 7 12 8.6e-11 6.7e-08 32.6 0.3 5 25 319 339 316 340 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF320-204 - 509 7.4e-92 298.0 116.5 8 12 1.4e-12 1.1e-09 38.2 2.8 1 25 343 367 343 368 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF320-204 - 509 7.4e-92 298.0 116.5 9 12 9.8e-11 7.6e-08 32.4 0.3 2 26 372 396 371 396 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF320-204 - 509 7.4e-92 298.0 116.5 10 12 2.4e-08 1.8e-05 24.9 0.9 5 24 403 422 400 424 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF320-204 - 509 7.4e-92 298.0 116.5 11 12 2.7e-11 2.1e-08 34.2 2.2 1 26 427 452 427 452 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF320-204 - 509 7.4e-92 298.0 116.5 12 12 2.4e-09 1.9e-06 28.1 2.3 1 25 455 479 455 479 0.95 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZNF320-204 - 509 1.2e-59 195.5 123.6 1 12 1.4e-05 0.011 16.2 2.7 1 23 161 183 161 183 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF320-204 - 509 1.2e-59 195.5 123.6 2 12 1.3e-07 9.9e-05 22.6 4.4 1 23 189 211 189 211 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF320-204 - 509 1.2e-59 195.5 123.6 3 12 2e-05 0.016 15.6 3.3 1 23 217 239 217 239 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF320-204 - 509 1.2e-59 195.5 123.6 4 12 8.8e-08 6.8e-05 23.1 5.6 1 23 245 267 245 267 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF320-204 - 509 1.2e-59 195.5 123.6 5 12 2.7e-07 0.00021 21.6 0.1 1 23 273 295 273 295 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF320-204 - 509 1.2e-59 195.5 123.6 6 12 4.7e-08 3.7e-05 23.9 0.3 1 23 301 323 301 323 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF320-204 - 509 1.2e-59 195.5 123.6 7 12 5e-10 3.9e-07 30.2 3.2 1 23 329 351 329 351 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF320-204 - 509 1.2e-59 195.5 123.6 8 12 4.8e-07 0.00037 20.8 0.6 1 23 357 379 357 379 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF320-204 - 509 1.2e-59 195.5 123.6 9 12 1.6e-06 0.0012 19.1 1.9 1 23 385 407 385 407 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF320-204 - 509 1.2e-59 195.5 123.6 10 12 5.1e-09 4e-06 27.0 1.6 1 23 413 435 413 435 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF320-204 - 509 1.2e-59 195.5 123.6 11 12 4.8e-10 3.7e-07 30.2 1.9 1 23 441 463 441 463 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF320-204 - 509 1.2e-59 195.5 123.6 12 12 4.3e-07 0.00034 20.9 0.4 1 21 469 489 469 490 0.96 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZNF320-204 - 509 9.5e-32 106.9 107.5 1 13 9.3 7.3e+03 -1.6 2.2 15 23 147 155 140 156 0.71 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF320-204 - 509 9.5e-32 106.9 107.5 2 13 3.9e-05 0.03 15.1 2.9 1 23 161 183 161 184 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF320-204 - 509 9.5e-32 106.9 107.5 3 13 0.0019 1.5 9.9 3.5 1 23 189 211 189 212 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF320-204 - 509 9.5e-32 106.9 107.5 4 13 0.00042 0.32 11.9 2.8 1 23 217 239 217 240 0.91 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF320-204 - 509 9.5e-32 106.9 107.5 5 13 0.00016 0.12 13.2 4.1 1 23 245 267 245 268 0.88 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF320-204 - 509 9.5e-32 106.9 107.5 6 13 0.00022 0.17 12.8 0.2 1 23 273 295 273 296 0.89 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF320-204 - 509 9.5e-32 106.9 107.5 7 13 2.3e-05 0.018 15.9 0.3 1 23 301 323 301 324 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF320-204 - 509 9.5e-32 106.9 107.5 8 13 3.8e-06 0.003 18.3 2.3 1 23 329 351 329 352 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF320-204 - 509 9.5e-32 106.9 107.5 9 13 4.9e-05 0.038 14.8 0.6 1 23 357 379 357 380 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF320-204 - 509 9.5e-32 106.9 107.5 10 13 4.9e-05 0.038 14.8 1.9 1 23 385 407 385 408 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF320-204 - 509 9.5e-32 106.9 107.5 11 13 4.4e-05 0.034 15.0 1.1 1 23 413 435 413 436 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF320-204 - 509 9.5e-32 106.9 107.5 12 13 7.1e-06 0.0055 17.4 1.3 1 23 441 463 441 464 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF320-204 - 509 9.5e-32 106.9 107.5 13 13 7.2e-05 0.056 14.3 0.4 1 21 469 489 469 491 0.79 C2H2-type zinc finger KRAB PF01352.27 42 ZNF320-204 - 509 8.5e-27 92.5 0.2 1 1 1.8e-29 1.4e-26 91.8 0.2 2 42 8 48 7 48 0.97 KRAB box zf-C2H2_jaz PF12171.8 27 ZNF320-204 - 509 1.4e-15 57.1 59.6 1 12 0.038 29 5.1 1.7 2 12 161 171 160 180 0.81 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF320-204 - 509 1.4e-15 57.1 59.6 2 12 5.1e-05 0.039 14.2 1.5 2 21 189 208 188 209 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF320-204 - 509 1.4e-15 57.1 59.6 3 12 1.1 8.6e+02 0.4 0.2 2 11 217 226 216 232 0.88 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF320-204 - 509 1.4e-15 57.1 59.6 4 12 0.12 96 3.4 0.4 2 12 245 255 244 263 0.85 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF320-204 - 509 1.4e-15 57.1 59.6 5 12 0.0032 2.5 8.5 0.0 2 21 273 292 272 293 0.91 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF320-204 - 509 1.4e-15 57.1 59.6 6 12 0.024 19 5.7 0.0 2 21 301 320 300 321 0.87 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF320-204 - 509 1.4e-15 57.1 59.6 7 12 2.6e-05 0.02 15.2 0.2 2 21 329 348 328 349 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF320-204 - 509 1.4e-15 57.1 59.6 8 12 2.4e-05 0.019 15.3 0.1 2 22 357 377 356 377 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF320-204 - 509 1.4e-15 57.1 59.6 9 12 0.16 1.2e+02 3.1 1.1 2 15 385 398 384 405 0.82 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF320-204 - 509 1.4e-15 57.1 59.6 10 12 0.00011 0.083 13.2 0.4 2 21 413 432 412 433 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF320-204 - 509 1.4e-15 57.1 59.6 11 12 0.012 9 6.7 0.0 2 22 441 461 440 461 0.91 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF320-204 - 509 1.4e-15 57.1 59.6 12 12 0.27 2.1e+02 2.3 0.4 2 21 469 488 468 489 0.78 Zinc-finger double-stranded RNA-binding zf-met PF12874.7 25 ZNF320-204 - 509 6.7e-15 54.9 73.4 1 12 0.0013 1 9.8 2.9 1 19 161 179 161 180 0.96 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF320-204 - 509 6.7e-15 54.9 73.4 2 12 1.4e-05 0.011 16.1 2.0 1 23 189 211 189 212 0.91 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF320-204 - 509 6.7e-15 54.9 73.4 3 12 0.66 5.2e+02 1.3 2.5 1 19 217 235 217 240 0.87 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF320-204 - 509 6.7e-15 54.9 73.4 4 12 0.51 4e+02 1.6 0.5 1 11 245 255 245 263 0.83 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF320-204 - 509 6.7e-15 54.9 73.4 5 12 0.019 15 6.1 0.3 1 19 273 291 273 295 0.91 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF320-204 - 509 6.7e-15 54.9 73.4 6 12 0.042 33 5.1 0.0 1 19 301 319 301 322 0.92 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF320-204 - 509 6.7e-15 54.9 73.4 7 12 3.8e-05 0.03 14.7 0.4 1 20 329 348 329 352 0.91 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF320-204 - 509 6.7e-15 54.9 73.4 8 12 0.00026 0.2 12.1 0.3 1 20 357 376 357 379 0.90 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF320-204 - 509 6.7e-15 54.9 73.4 9 12 0.0096 7.4 7.1 1.8 1 20 385 404 385 405 0.94 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF320-204 - 509 6.7e-15 54.9 73.4 10 12 0.00061 0.48 10.9 0.3 1 20 413 432 413 436 0.91 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF320-204 - 509 6.7e-15 54.9 73.4 11 12 0.0004 0.31 11.5 0.1 2 21 442 461 441 464 0.90 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF320-204 - 509 6.7e-15 54.9 73.4 12 12 0.081 63 4.2 0.3 8 23 461 476 460 477 0.88 Zinc-finger of C2H2 type zf-C2H2_6 PF13912.6 27 ZNF320-204 - 509 3e-12 46.2 101.2 1 13 4.8 3.7e+03 -1.9 0.9 20 26 147 153 147 154 0.88 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF320-204 - 509 3e-12 46.2 101.2 2 13 0.25 2e+02 2.2 5.4 2 12 161 171 161 172 0.95 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF320-204 - 509 3e-12 46.2 101.2 3 13 0.0026 2 8.5 2.1 2 13 189 200 189 213 0.74 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF320-204 - 509 3e-12 46.2 101.2 4 13 0.0015 1.1 9.3 0.9 1 11 216 226 216 227 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF320-204 - 509 3e-12 46.2 101.2 5 13 0.00071 0.56 10.3 1.2 2 12 245 255 245 256 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF320-204 - 509 3e-12 46.2 101.2 6 13 9.9e-05 0.077 13.0 0.2 2 24 273 295 273 298 0.82 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF320-204 - 509 3e-12 46.2 101.2 7 13 6.2e-05 0.048 13.7 0.5 2 24 301 323 301 326 0.87 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF320-204 - 509 3e-12 46.2 101.2 8 13 0.00061 0.47 10.5 1.0 2 24 329 351 329 354 0.86 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF320-204 - 509 3e-12 46.2 101.2 9 13 0.00017 0.13 12.3 0.4 2 13 357 368 357 380 0.85 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF320-204 - 509 3e-12 46.2 101.2 10 13 0.00071 0.55 10.3 1.2 2 13 385 396 385 397 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF320-204 - 509 3e-12 46.2 101.2 11 13 0.01 7.8 6.6 0.4 2 11 413 422 412 435 0.83 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF320-204 - 509 3e-12 46.2 101.2 12 13 0.062 49 4.1 0.5 2 13 441 452 441 464 0.80 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF320-204 - 509 3e-12 46.2 101.2 13 13 0.001 0.8 9.8 1.7 2 12 469 479 468 479 0.92 C2H2-type zinc finger Zn-ribbon_8 PF09723.10 40 ZNF320-204 - 509 2.1e-10 40.5 74.3 1 10 0.0058 4.5 7.5 6.7 6 34 161 196 160 201 0.90 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF320-204 - 509 2.1e-10 40.5 74.3 2 10 0.00046 0.36 11.0 7.0 6 35 217 253 216 256 0.79 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF320-204 - 509 2.1e-10 40.5 74.3 3 10 8.8e-05 0.069 13.3 5.0 6 38 245 284 243 285 0.81 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF320-204 - 509 2.1e-10 40.5 74.3 4 10 3e-05 0.024 14.8 4.1 6 34 273 308 272 313 0.88 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF320-204 - 509 2.1e-10 40.5 74.3 5 10 0.0011 0.89 9.7 0.4 6 19 301 314 299 320 0.86 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF320-204 - 509 2.1e-10 40.5 74.3 6 10 0.00054 0.42 10.8 4.9 6 35 329 365 328 369 0.86 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF320-204 - 509 2.1e-10 40.5 74.3 7 10 0.001 0.79 9.9 3.5 6 34 357 392 356 399 0.88 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF320-204 - 509 2.1e-10 40.5 74.3 8 10 0.014 11 6.2 6.4 6 34 385 420 384 426 0.79 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF320-204 - 509 2.1e-10 40.5 74.3 9 10 0.016 12 6.1 4.9 6 34 413 448 412 453 0.85 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF320-204 - 509 2.1e-10 40.5 74.3 10 10 0.00046 0.36 11.0 1.3 6 32 469 499 468 504 0.60 Zinc ribbon domain zf_UBZ PF18439.1 32 ZNF320-204 - 509 3.5e-07 29.7 64.9 1 13 0.035 28 4.4 1.9 3 15 161 173 159 177 0.81 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF320-204 - 509 3.5e-07 29.7 64.9 2 13 0.24 1.9e+02 1.8 0.3 3 16 189 203 187 208 0.79 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF320-204 - 509 3.5e-07 29.7 64.9 3 13 0.0028 2.1 8.0 1.4 2 20 216 235 215 236 0.82 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF320-204 - 509 3.5e-07 29.7 64.9 4 13 0.0038 3 7.5 0.2 3 15 245 257 243 263 0.86 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF320-204 - 509 3.5e-07 29.7 64.9 5 13 0.012 9.6 5.9 0.1 3 14 273 284 271 288 0.84 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF320-204 - 509 3.5e-07 29.7 64.9 6 13 0.017 13 5.5 0.1 3 14 301 312 299 319 0.85 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF320-204 - 509 3.5e-07 29.7 64.9 7 13 0.0082 6.4 6.5 0.3 3 15 329 341 327 347 0.81 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF320-204 - 509 3.5e-07 29.7 64.9 8 13 0.015 12 5.6 0.1 3 21 357 376 355 376 0.93 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF320-204 - 509 3.5e-07 29.7 64.9 9 13 0.0026 2 8.1 0.3 3 18 385 401 383 404 0.79 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF320-204 - 509 3.5e-07 29.7 64.9 10 13 0.047 37 4.0 0.2 3 11 413 421 411 429 0.84 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF320-204 - 509 3.5e-07 29.7 64.9 11 13 0.11 89 2.8 0.2 3 15 441 453 439 460 0.80 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF320-204 - 509 3.5e-07 29.7 64.9 12 13 0.00032 0.25 11.0 0.1 2 21 468 488 467 488 0.93 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF320-204 - 509 3.5e-07 29.7 64.9 13 13 7.2 5.6e+03 -3.0 0.2 5 11 496 502 495 507 0.75 Ubiquitin-Binding Zinc Finger # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF320-204.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF320-204.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF320-204.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF320-204.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF320-204.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:03:51 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF320-205.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF320-205.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF320-205.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF320-205.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF320-205.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:03:51 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF320-206.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF320-206.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF320-206.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF320-206.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF320-206.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:03:51 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF320-207.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF320-207.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF320-207.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF320-207.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF320-207.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:03:52 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF320-208.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF320-208.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF320-208.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF320-208.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF320-208.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:03:52 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF320-209.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF320-209.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF320-209.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF320-209.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF320-209.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:03:53 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- KRAB PF01352.27 42 ZNF320-210 - 117 2.7e-28 97.3 0.1 1 1 2.2e-32 4e-28 96.8 0.1 1 42 7 48 7 48 0.98 KRAB box # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF320-210.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF320-210.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF320-210.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF320-210.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF320-210.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:03:53 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- KRAB PF01352.27 42 ZNF320-211 - 81 2.4e-20 71.9 0.1 1 1 3.5e-24 3.1e-20 71.5 0.1 2 42 8 48 7 48 0.98 KRAB box # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF320-211.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF320-211.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF320-211.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF320-211.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF320-211.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:03:53 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF320-212.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF320-212.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF320-212.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF320-212.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF320-212.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:03:54 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF320-213.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF320-213.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF320-213.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF320-213.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF320-213.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:03:54 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZNF3-202 - 446 1.9e-73 239.8 46.4 1 9 2.1e-05 0.014 15.8 0.1 4 25 189 210 186 211 0.78 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF3-202 - 446 1.9e-73 239.8 46.4 2 9 1.2e-11 7.8e-09 35.6 0.1 2 25 215 238 214 239 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF3-202 - 446 1.9e-73 239.8 46.4 3 9 1.9e-11 1.2e-08 34.9 1.9 1 25 242 266 242 267 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF3-202 - 446 1.9e-73 239.8 46.4 4 9 6.3e-11 4.2e-08 33.3 0.2 2 25 271 294 270 294 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF3-202 - 446 1.9e-73 239.8 46.4 5 9 2.3e-10 1.5e-07 31.5 1.0 2 25 299 322 298 323 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF3-202 - 446 1.9e-73 239.8 46.4 6 9 7.5e-11 5e-08 33.0 0.6 5 25 330 350 327 351 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF3-202 - 446 1.9e-73 239.8 46.4 7 9 8.6e-11 5.7e-08 32.8 1.4 1 25 354 378 354 379 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF3-202 - 446 1.9e-73 239.8 46.4 8 9 1.4e-11 9.6e-09 35.3 0.1 2 25 383 406 382 407 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF3-202 - 446 1.9e-73 239.8 46.4 9 9 1.5e-05 0.01 16.2 0.1 1 15 410 424 410 425 0.93 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZNF3-202 - 446 1.2e-50 167.2 58.0 1 9 0.021 14 6.4 0.0 9 21 180 192 178 193 0.90 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF3-202 - 446 1.2e-50 167.2 58.0 2 9 2.4e-08 1.6e-05 25.1 2.3 1 23 200 222 200 222 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF3-202 - 446 1.2e-50 167.2 58.0 3 9 1.1e-09 7.3e-07 29.3 0.8 1 23 228 250 228 250 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF3-202 - 446 1.2e-50 167.2 58.0 4 9 1.2e-06 0.00082 19.7 1.4 1 23 256 278 256 278 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF3-202 - 446 1.2e-50 167.2 58.0 5 9 2.3e-07 0.00015 22.0 1.8 1 23 284 306 284 306 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF3-202 - 446 1.2e-50 167.2 58.0 6 9 4.5e-09 3e-06 27.4 1.0 1 23 312 334 312 334 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF3-202 - 446 1.2e-50 167.2 58.0 7 9 4e-09 2.7e-06 27.5 1.6 1 23 340 362 340 362 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF3-202 - 446 1.2e-50 167.2 58.0 8 9 3.2e-06 0.0021 18.4 0.2 1 23 368 390 368 390 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF3-202 - 446 1.2e-50 167.2 58.0 9 9 3.5e-09 2.3e-06 27.7 0.3 1 23 396 418 396 418 0.98 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZNF3-202 - 446 1.3e-27 94.0 55.0 1 8 2.4e-05 0.016 16.0 1.4 1 23 200 222 200 223 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF3-202 - 446 1.3e-27 94.0 55.0 2 8 1.3e-05 0.0086 16.8 0.8 1 23 228 250 228 251 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF3-202 - 446 1.3e-27 94.0 55.0 3 8 7.1e-06 0.0047 17.7 1.3 1 23 256 278 256 279 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF3-202 - 446 1.3e-27 94.0 55.0 4 8 9.6e-05 0.064 14.1 1.5 1 23 284 306 284 307 0.90 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF3-202 - 446 1.3e-27 94.0 55.0 5 8 8.6e-06 0.0057 17.4 0.8 1 23 312 334 312 335 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF3-202 - 446 1.3e-27 94.0 55.0 6 8 1.8e-05 0.012 16.4 1.4 1 23 340 362 340 363 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF3-202 - 446 1.3e-27 94.0 55.0 7 8 0.00012 0.077 13.9 0.2 1 23 368 390 368 391 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF3-202 - 446 1.3e-27 94.0 55.0 8 8 8.1e-06 0.0053 17.5 0.4 1 23 396 418 396 419 0.95 C2H2-type zinc finger KRAB PF01352.27 42 ZNF3-202 - 446 3.8e-24 84.1 0.2 1 1 1.2e-26 7.7e-24 83.1 0.2 1 42 50 91 50 91 0.98 KRAB box zf-C2H2_6 PF13912.6 27 ZNF3-202 - 446 1.4e-13 50.4 54.9 1 9 3.3e-06 0.0022 18.0 0.7 2 24 200 222 200 225 0.89 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF3-202 - 446 1.4e-13 50.4 54.9 2 9 0.0038 2.5 8.2 2.6 2 12 228 238 228 250 0.86 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF3-202 - 446 1.4e-13 50.4 54.9 3 9 0.00059 0.39 10.8 0.9 2 24 256 278 256 281 0.90 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF3-202 - 446 1.4e-13 50.4 54.9 4 9 0.00027 0.18 11.8 0.3 2 12 284 294 284 295 0.95 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF3-202 - 446 1.4e-13 50.4 54.9 5 9 0.0032 2.1 8.4 0.5 2 13 312 323 312 335 0.79 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF3-202 - 446 1.4e-13 50.4 54.9 6 9 0.0013 0.85 9.7 0.6 2 12 340 350 340 351 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF3-202 - 446 1.4e-13 50.4 54.9 7 9 4.5 3e+03 -1.6 0.1 20 26 354 360 353 361 0.84 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF3-202 - 446 1.4e-13 50.4 54.9 8 9 0.14 92 3.2 0.5 2 22 368 388 368 392 0.85 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF3-202 - 446 1.4e-13 50.4 54.9 9 9 3e-05 0.02 14.9 0.5 2 22 396 416 396 420 0.87 C2H2-type zinc finger Zn-ribbon_8 PF09723.10 40 ZNF3-202 - 446 6.8e-10 38.9 39.8 1 7 0.0038 2.5 8.3 4.8 7 35 201 236 200 239 0.89 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF3-202 - 446 6.8e-10 38.9 39.8 2 7 0.00011 0.076 13.1 5.3 6 34 228 263 226 266 0.92 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF3-202 - 446 6.8e-10 38.9 39.8 3 7 0.0058 3.9 7.7 0.8 6 16 256 266 255 283 0.82 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF3-202 - 446 6.8e-10 38.9 39.8 4 7 6.2e-07 0.00041 20.4 1.5 6 38 284 323 283 325 0.92 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF3-202 - 446 6.8e-10 38.9 39.8 5 7 5.1e-05 0.034 14.3 4.6 6 35 340 376 338 379 0.93 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF3-202 - 446 6.8e-10 38.9 39.8 6 7 0.00031 0.2 11.8 4.9 6 36 368 405 367 407 0.92 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF3-202 - 446 6.8e-10 38.9 39.8 7 7 0.013 8.6 6.6 0.6 6 16 396 406 395 422 0.79 Zinc ribbon domain XPA_N PF01286.18 32 ZNF3-202 - 446 6.6e-09 35.7 33.7 1 8 0.0063 4.2 7.5 0.2 3 12 201 210 199 216 0.87 XPA protein N-terminal XPA_N PF01286.18 32 ZNF3-202 - 446 6.6e-09 35.7 33.7 2 8 0.0021 1.4 9.0 0.2 3 14 229 240 227 245 0.91 XPA protein N-terminal XPA_N PF01286.18 32 ZNF3-202 - 446 6.6e-09 35.7 33.7 3 8 0.092 61 3.8 1.6 3 14 257 268 255 270 0.87 XPA protein N-terminal XPA_N PF01286.18 32 ZNF3-202 - 446 6.6e-09 35.7 33.7 4 8 0.0066 4.4 7.4 0.1 3 14 285 296 283 302 0.85 XPA protein N-terminal XPA_N PF01286.18 32 ZNF3-202 - 446 6.6e-09 35.7 33.7 5 8 0.0098 6.5 6.9 0.1 4 14 314 324 311 327 0.90 XPA protein N-terminal XPA_N PF01286.18 32 ZNF3-202 - 446 6.6e-09 35.7 33.7 6 8 0.0017 1.1 9.3 0.2 3 14 341 352 339 358 0.86 XPA protein N-terminal XPA_N PF01286.18 32 ZNF3-202 - 446 6.6e-09 35.7 33.7 7 8 0.053 35 4.5 0.1 3 14 369 380 367 381 0.86 XPA protein N-terminal XPA_N PF01286.18 32 ZNF3-202 - 446 6.6e-09 35.7 33.7 8 8 0.012 8.2 6.6 0.1 3 14 397 408 395 411 0.87 XPA protein N-terminal # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF3-202.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF3-202.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF3-202.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF3-202.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF3-202.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:03:54 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZNF3-203 - 446 1.9e-73 239.8 46.4 1 9 2.1e-05 0.014 15.8 0.1 4 25 189 210 186 211 0.78 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF3-203 - 446 1.9e-73 239.8 46.4 2 9 1.2e-11 7.8e-09 35.6 0.1 2 25 215 238 214 239 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF3-203 - 446 1.9e-73 239.8 46.4 3 9 1.9e-11 1.2e-08 34.9 1.9 1 25 242 266 242 267 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF3-203 - 446 1.9e-73 239.8 46.4 4 9 6.3e-11 4.2e-08 33.3 0.2 2 25 271 294 270 294 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF3-203 - 446 1.9e-73 239.8 46.4 5 9 2.3e-10 1.5e-07 31.5 1.0 2 25 299 322 298 323 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF3-203 - 446 1.9e-73 239.8 46.4 6 9 7.5e-11 5e-08 33.0 0.6 5 25 330 350 327 351 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF3-203 - 446 1.9e-73 239.8 46.4 7 9 8.6e-11 5.7e-08 32.8 1.4 1 25 354 378 354 379 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF3-203 - 446 1.9e-73 239.8 46.4 8 9 1.4e-11 9.6e-09 35.3 0.1 2 25 383 406 382 407 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF3-203 - 446 1.9e-73 239.8 46.4 9 9 1.5e-05 0.01 16.2 0.1 1 15 410 424 410 425 0.93 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZNF3-203 - 446 1.2e-50 167.2 58.0 1 9 0.021 14 6.4 0.0 9 21 180 192 178 193 0.90 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF3-203 - 446 1.2e-50 167.2 58.0 2 9 2.4e-08 1.6e-05 25.1 2.3 1 23 200 222 200 222 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF3-203 - 446 1.2e-50 167.2 58.0 3 9 1.1e-09 7.3e-07 29.3 0.8 1 23 228 250 228 250 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF3-203 - 446 1.2e-50 167.2 58.0 4 9 1.2e-06 0.00082 19.7 1.4 1 23 256 278 256 278 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF3-203 - 446 1.2e-50 167.2 58.0 5 9 2.3e-07 0.00015 22.0 1.8 1 23 284 306 284 306 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF3-203 - 446 1.2e-50 167.2 58.0 6 9 4.5e-09 3e-06 27.4 1.0 1 23 312 334 312 334 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF3-203 - 446 1.2e-50 167.2 58.0 7 9 4e-09 2.7e-06 27.5 1.6 1 23 340 362 340 362 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF3-203 - 446 1.2e-50 167.2 58.0 8 9 3.2e-06 0.0021 18.4 0.2 1 23 368 390 368 390 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF3-203 - 446 1.2e-50 167.2 58.0 9 9 3.5e-09 2.3e-06 27.7 0.3 1 23 396 418 396 418 0.98 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZNF3-203 - 446 1.3e-27 94.0 55.0 1 8 2.4e-05 0.016 16.0 1.4 1 23 200 222 200 223 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF3-203 - 446 1.3e-27 94.0 55.0 2 8 1.3e-05 0.0086 16.8 0.8 1 23 228 250 228 251 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF3-203 - 446 1.3e-27 94.0 55.0 3 8 7.1e-06 0.0047 17.7 1.3 1 23 256 278 256 279 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF3-203 - 446 1.3e-27 94.0 55.0 4 8 9.6e-05 0.064 14.1 1.5 1 23 284 306 284 307 0.90 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF3-203 - 446 1.3e-27 94.0 55.0 5 8 8.6e-06 0.0057 17.4 0.8 1 23 312 334 312 335 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF3-203 - 446 1.3e-27 94.0 55.0 6 8 1.8e-05 0.012 16.4 1.4 1 23 340 362 340 363 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF3-203 - 446 1.3e-27 94.0 55.0 7 8 0.00012 0.077 13.9 0.2 1 23 368 390 368 391 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF3-203 - 446 1.3e-27 94.0 55.0 8 8 8.1e-06 0.0053 17.5 0.4 1 23 396 418 396 419 0.95 C2H2-type zinc finger KRAB PF01352.27 42 ZNF3-203 - 446 3.8e-24 84.1 0.2 1 1 1.2e-26 7.7e-24 83.1 0.2 1 42 50 91 50 91 0.98 KRAB box zf-C2H2_6 PF13912.6 27 ZNF3-203 - 446 1.4e-13 50.4 54.9 1 9 3.3e-06 0.0022 18.0 0.7 2 24 200 222 200 225 0.89 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF3-203 - 446 1.4e-13 50.4 54.9 2 9 0.0038 2.5 8.2 2.6 2 12 228 238 228 250 0.86 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF3-203 - 446 1.4e-13 50.4 54.9 3 9 0.00059 0.39 10.8 0.9 2 24 256 278 256 281 0.90 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF3-203 - 446 1.4e-13 50.4 54.9 4 9 0.00027 0.18 11.8 0.3 2 12 284 294 284 295 0.95 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF3-203 - 446 1.4e-13 50.4 54.9 5 9 0.0032 2.1 8.4 0.5 2 13 312 323 312 335 0.79 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF3-203 - 446 1.4e-13 50.4 54.9 6 9 0.0013 0.85 9.7 0.6 2 12 340 350 340 351 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF3-203 - 446 1.4e-13 50.4 54.9 7 9 4.5 3e+03 -1.6 0.1 20 26 354 360 353 361 0.84 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF3-203 - 446 1.4e-13 50.4 54.9 8 9 0.14 92 3.2 0.5 2 22 368 388 368 392 0.85 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF3-203 - 446 1.4e-13 50.4 54.9 9 9 3e-05 0.02 14.9 0.5 2 22 396 416 396 420 0.87 C2H2-type zinc finger Zn-ribbon_8 PF09723.10 40 ZNF3-203 - 446 6.8e-10 38.9 39.8 1 7 0.0038 2.5 8.3 4.8 7 35 201 236 200 239 0.89 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF3-203 - 446 6.8e-10 38.9 39.8 2 7 0.00011 0.076 13.1 5.3 6 34 228 263 226 266 0.92 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF3-203 - 446 6.8e-10 38.9 39.8 3 7 0.0058 3.9 7.7 0.8 6 16 256 266 255 283 0.82 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF3-203 - 446 6.8e-10 38.9 39.8 4 7 6.2e-07 0.00041 20.4 1.5 6 38 284 323 283 325 0.92 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF3-203 - 446 6.8e-10 38.9 39.8 5 7 5.1e-05 0.034 14.3 4.6 6 35 340 376 338 379 0.93 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF3-203 - 446 6.8e-10 38.9 39.8 6 7 0.00031 0.2 11.8 4.9 6 36 368 405 367 407 0.92 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF3-203 - 446 6.8e-10 38.9 39.8 7 7 0.013 8.6 6.6 0.6 6 16 396 406 395 422 0.79 Zinc ribbon domain XPA_N PF01286.18 32 ZNF3-203 - 446 6.6e-09 35.7 33.7 1 8 0.0063 4.2 7.5 0.2 3 12 201 210 199 216 0.87 XPA protein N-terminal XPA_N PF01286.18 32 ZNF3-203 - 446 6.6e-09 35.7 33.7 2 8 0.0021 1.4 9.0 0.2 3 14 229 240 227 245 0.91 XPA protein N-terminal XPA_N PF01286.18 32 ZNF3-203 - 446 6.6e-09 35.7 33.7 3 8 0.092 61 3.8 1.6 3 14 257 268 255 270 0.87 XPA protein N-terminal XPA_N PF01286.18 32 ZNF3-203 - 446 6.6e-09 35.7 33.7 4 8 0.0066 4.4 7.4 0.1 3 14 285 296 283 302 0.85 XPA protein N-terminal XPA_N PF01286.18 32 ZNF3-203 - 446 6.6e-09 35.7 33.7 5 8 0.0098 6.5 6.9 0.1 4 14 314 324 311 327 0.90 XPA protein N-terminal XPA_N PF01286.18 32 ZNF3-203 - 446 6.6e-09 35.7 33.7 6 8 0.0017 1.1 9.3 0.2 3 14 341 352 339 358 0.86 XPA protein N-terminal XPA_N PF01286.18 32 ZNF3-203 - 446 6.6e-09 35.7 33.7 7 8 0.053 35 4.5 0.1 3 14 369 380 367 381 0.86 XPA protein N-terminal XPA_N PF01286.18 32 ZNF3-203 - 446 6.6e-09 35.7 33.7 8 8 0.012 8.2 6.6 0.1 3 14 397 408 395 411 0.87 XPA protein N-terminal # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF3-203.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF3-203.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF3-203.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF3-203.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF3-203.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:03:55 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF3-204.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF3-204.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF3-204.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF3-204.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF3-204.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:03:55 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- KRAB PF01352.27 42 ZNF3-205 - 131 4.9e-25 86.9 0.5 1 2 0.23 4.2e+03 -2.5 0.0 12 22 9 19 8 19 0.83 KRAB box KRAB PF01352.27 42 ZNF3-205 - 131 4.9e-25 86.9 0.5 2 2 6.1e-29 1.1e-24 85.8 0.2 1 42 50 91 50 91 0.98 KRAB box # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF3-205.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF3-205.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF3-205.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF3-205.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF3-205.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:03:55 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF3-206.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF3-206.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF3-206.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF3-206.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF3-206.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:03:56 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZNF3-207 - 446 1.9e-73 239.8 46.4 1 9 2.1e-05 0.014 15.8 0.1 4 25 189 210 186 211 0.78 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF3-207 - 446 1.9e-73 239.8 46.4 2 9 1.2e-11 7.8e-09 35.6 0.1 2 25 215 238 214 239 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF3-207 - 446 1.9e-73 239.8 46.4 3 9 1.9e-11 1.2e-08 34.9 1.9 1 25 242 266 242 267 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF3-207 - 446 1.9e-73 239.8 46.4 4 9 6.3e-11 4.2e-08 33.3 0.2 2 25 271 294 270 294 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF3-207 - 446 1.9e-73 239.8 46.4 5 9 2.3e-10 1.5e-07 31.5 1.0 2 25 299 322 298 323 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF3-207 - 446 1.9e-73 239.8 46.4 6 9 7.5e-11 5e-08 33.0 0.6 5 25 330 350 327 351 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF3-207 - 446 1.9e-73 239.8 46.4 7 9 8.6e-11 5.7e-08 32.8 1.4 1 25 354 378 354 379 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF3-207 - 446 1.9e-73 239.8 46.4 8 9 1.4e-11 9.6e-09 35.3 0.1 2 25 383 406 382 407 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF3-207 - 446 1.9e-73 239.8 46.4 9 9 1.5e-05 0.01 16.2 0.1 1 15 410 424 410 425 0.93 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZNF3-207 - 446 1.2e-50 167.2 58.0 1 9 0.021 14 6.4 0.0 9 21 180 192 178 193 0.90 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF3-207 - 446 1.2e-50 167.2 58.0 2 9 2.4e-08 1.6e-05 25.1 2.3 1 23 200 222 200 222 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF3-207 - 446 1.2e-50 167.2 58.0 3 9 1.1e-09 7.3e-07 29.3 0.8 1 23 228 250 228 250 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF3-207 - 446 1.2e-50 167.2 58.0 4 9 1.2e-06 0.00082 19.7 1.4 1 23 256 278 256 278 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF3-207 - 446 1.2e-50 167.2 58.0 5 9 2.3e-07 0.00015 22.0 1.8 1 23 284 306 284 306 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF3-207 - 446 1.2e-50 167.2 58.0 6 9 4.5e-09 3e-06 27.4 1.0 1 23 312 334 312 334 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF3-207 - 446 1.2e-50 167.2 58.0 7 9 4e-09 2.7e-06 27.5 1.6 1 23 340 362 340 362 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF3-207 - 446 1.2e-50 167.2 58.0 8 9 3.2e-06 0.0021 18.4 0.2 1 23 368 390 368 390 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF3-207 - 446 1.2e-50 167.2 58.0 9 9 3.5e-09 2.3e-06 27.7 0.3 1 23 396 418 396 418 0.98 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZNF3-207 - 446 1.3e-27 94.0 55.0 1 8 2.4e-05 0.016 16.0 1.4 1 23 200 222 200 223 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF3-207 - 446 1.3e-27 94.0 55.0 2 8 1.3e-05 0.0086 16.8 0.8 1 23 228 250 228 251 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF3-207 - 446 1.3e-27 94.0 55.0 3 8 7.1e-06 0.0047 17.7 1.3 1 23 256 278 256 279 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF3-207 - 446 1.3e-27 94.0 55.0 4 8 9.6e-05 0.064 14.1 1.5 1 23 284 306 284 307 0.90 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF3-207 - 446 1.3e-27 94.0 55.0 5 8 8.6e-06 0.0057 17.4 0.8 1 23 312 334 312 335 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF3-207 - 446 1.3e-27 94.0 55.0 6 8 1.8e-05 0.012 16.4 1.4 1 23 340 362 340 363 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF3-207 - 446 1.3e-27 94.0 55.0 7 8 0.00012 0.077 13.9 0.2 1 23 368 390 368 391 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF3-207 - 446 1.3e-27 94.0 55.0 8 8 8.1e-06 0.0053 17.5 0.4 1 23 396 418 396 419 0.95 C2H2-type zinc finger KRAB PF01352.27 42 ZNF3-207 - 446 3.8e-24 84.1 0.2 1 1 1.2e-26 7.7e-24 83.1 0.2 1 42 50 91 50 91 0.98 KRAB box zf-C2H2_6 PF13912.6 27 ZNF3-207 - 446 1.4e-13 50.4 54.9 1 9 3.3e-06 0.0022 18.0 0.7 2 24 200 222 200 225 0.89 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF3-207 - 446 1.4e-13 50.4 54.9 2 9 0.0038 2.5 8.2 2.6 2 12 228 238 228 250 0.86 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF3-207 - 446 1.4e-13 50.4 54.9 3 9 0.00059 0.39 10.8 0.9 2 24 256 278 256 281 0.90 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF3-207 - 446 1.4e-13 50.4 54.9 4 9 0.00027 0.18 11.8 0.3 2 12 284 294 284 295 0.95 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF3-207 - 446 1.4e-13 50.4 54.9 5 9 0.0032 2.1 8.4 0.5 2 13 312 323 312 335 0.79 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF3-207 - 446 1.4e-13 50.4 54.9 6 9 0.0013 0.85 9.7 0.6 2 12 340 350 340 351 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF3-207 - 446 1.4e-13 50.4 54.9 7 9 4.5 3e+03 -1.6 0.1 20 26 354 360 353 361 0.84 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF3-207 - 446 1.4e-13 50.4 54.9 8 9 0.14 92 3.2 0.5 2 22 368 388 368 392 0.85 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF3-207 - 446 1.4e-13 50.4 54.9 9 9 3e-05 0.02 14.9 0.5 2 22 396 416 396 420 0.87 C2H2-type zinc finger Zn-ribbon_8 PF09723.10 40 ZNF3-207 - 446 6.8e-10 38.9 39.8 1 7 0.0038 2.5 8.3 4.8 7 35 201 236 200 239 0.89 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF3-207 - 446 6.8e-10 38.9 39.8 2 7 0.00011 0.076 13.1 5.3 6 34 228 263 226 266 0.92 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF3-207 - 446 6.8e-10 38.9 39.8 3 7 0.0058 3.9 7.7 0.8 6 16 256 266 255 283 0.82 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF3-207 - 446 6.8e-10 38.9 39.8 4 7 6.2e-07 0.00041 20.4 1.5 6 38 284 323 283 325 0.92 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF3-207 - 446 6.8e-10 38.9 39.8 5 7 5.1e-05 0.034 14.3 4.6 6 35 340 376 338 379 0.93 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF3-207 - 446 6.8e-10 38.9 39.8 6 7 0.00031 0.2 11.8 4.9 6 36 368 405 367 407 0.92 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF3-207 - 446 6.8e-10 38.9 39.8 7 7 0.013 8.6 6.6 0.6 6 16 396 406 395 422 0.79 Zinc ribbon domain XPA_N PF01286.18 32 ZNF3-207 - 446 6.6e-09 35.7 33.7 1 8 0.0063 4.2 7.5 0.2 3 12 201 210 199 216 0.87 XPA protein N-terminal XPA_N PF01286.18 32 ZNF3-207 - 446 6.6e-09 35.7 33.7 2 8 0.0021 1.4 9.0 0.2 3 14 229 240 227 245 0.91 XPA protein N-terminal XPA_N PF01286.18 32 ZNF3-207 - 446 6.6e-09 35.7 33.7 3 8 0.092 61 3.8 1.6 3 14 257 268 255 270 0.87 XPA protein N-terminal XPA_N PF01286.18 32 ZNF3-207 - 446 6.6e-09 35.7 33.7 4 8 0.0066 4.4 7.4 0.1 3 14 285 296 283 302 0.85 XPA protein N-terminal XPA_N PF01286.18 32 ZNF3-207 - 446 6.6e-09 35.7 33.7 5 8 0.0098 6.5 6.9 0.1 4 14 314 324 311 327 0.90 XPA protein N-terminal XPA_N PF01286.18 32 ZNF3-207 - 446 6.6e-09 35.7 33.7 6 8 0.0017 1.1 9.3 0.2 3 14 341 352 339 358 0.86 XPA protein N-terminal XPA_N PF01286.18 32 ZNF3-207 - 446 6.6e-09 35.7 33.7 7 8 0.053 35 4.5 0.1 3 14 369 380 367 381 0.86 XPA protein N-terminal XPA_N PF01286.18 32 ZNF3-207 - 446 6.6e-09 35.7 33.7 8 8 0.012 8.2 6.6 0.1 3 14 397 408 395 411 0.87 XPA protein N-terminal # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF3-207.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF3-207.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF3-207.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF3-207.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF3-207.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:03:56 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF3-208.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF3-208.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF3-208.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF3-208.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF3-208.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:03:57 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF3-209.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF3-209.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF3-209.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF3-209.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF3-209.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:03:57 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF3-210.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF3-210.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF3-210.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF3-210.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF3-210.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:03:57 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF3-211.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF3-211.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF3-211.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF3-211.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF3-211.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:03:58 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF3-212.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF3-212.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF3-212.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF3-212.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF3-212.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:03:58 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF3-213.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF3-213.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF3-213.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF3-213.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF3-213.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:03:58 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF3-214.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF3-214.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF3-214.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF3-214.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF3-214.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:03:59 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZNF3-215 - 453 2.2e-73 239.7 46.4 1 9 2e-05 0.014 15.8 0.1 4 25 196 217 193 218 0.78 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF3-215 - 453 2.2e-73 239.7 46.4 2 9 1.2e-11 8e-09 35.5 0.1 2 25 222 245 221 246 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF3-215 - 453 2.2e-73 239.7 46.4 3 9 1.8e-11 1.3e-08 34.9 1.9 1 25 249 273 249 274 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF3-215 - 453 2.2e-73 239.7 46.4 4 9 6.2e-11 4.3e-08 33.2 0.2 2 25 278 301 277 301 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF3-215 - 453 2.2e-73 239.7 46.4 5 9 2.3e-10 1.6e-07 31.4 1.0 2 25 306 329 305 330 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF3-215 - 453 2.2e-73 239.7 46.4 6 9 7.4e-11 5.1e-08 33.0 0.6 5 25 337 357 334 358 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF3-215 - 453 2.2e-73 239.7 46.4 7 9 8.4e-11 5.8e-08 32.8 1.4 1 25 361 385 361 386 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF3-215 - 453 2.2e-73 239.7 46.4 8 9 1.4e-11 9.8e-09 35.3 0.1 2 25 390 413 389 414 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF3-215 - 453 2.2e-73 239.7 46.4 9 9 1.5e-05 0.01 16.2 0.1 1 15 417 431 417 432 0.93 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZNF3-215 - 453 1.5e-50 166.9 58.0 1 9 0.02 14 6.4 0.0 9 21 187 199 185 200 0.90 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF3-215 - 453 1.5e-50 166.9 58.0 2 9 2.3e-08 1.6e-05 25.1 2.3 1 23 207 229 207 229 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF3-215 - 453 1.5e-50 166.9 58.0 3 9 1.1e-09 7.4e-07 29.3 0.8 1 23 235 257 235 257 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF3-215 - 453 1.5e-50 166.9 58.0 4 9 1.2e-06 0.00083 19.7 1.4 1 23 263 285 263 285 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF3-215 - 453 1.5e-50 166.9 58.0 5 9 2.3e-07 0.00016 22.0 1.8 1 23 291 313 291 313 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF3-215 - 453 1.5e-50 166.9 58.0 6 9 4.4e-09 3e-06 27.4 1.0 1 23 319 341 319 341 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF3-215 - 453 1.5e-50 166.9 58.0 7 9 4e-09 2.7e-06 27.5 1.6 1 23 347 369 347 369 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF3-215 - 453 1.5e-50 166.9 58.0 8 9 3.1e-06 0.0021 18.4 0.2 1 23 375 397 375 397 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF3-215 - 453 1.5e-50 166.9 58.0 9 9 3.5e-09 2.4e-06 27.7 0.3 1 23 403 425 403 425 0.98 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZNF3-215 - 453 1.5e-27 93.8 55.0 1 8 2.3e-05 0.016 16.0 1.4 1 23 207 229 207 230 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF3-215 - 453 1.5e-27 93.8 55.0 2 8 1.3e-05 0.0088 16.8 0.8 1 23 235 257 235 258 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF3-215 - 453 1.5e-27 93.8 55.0 3 8 6.9e-06 0.0048 17.6 1.3 1 23 263 285 263 286 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF3-215 - 453 1.5e-27 93.8 55.0 4 8 9.4e-05 0.065 14.1 1.5 1 23 291 313 291 314 0.90 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF3-215 - 453 1.5e-27 93.8 55.0 5 8 8.4e-06 0.0058 17.4 0.8 1 23 319 341 319 342 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF3-215 - 453 1.5e-27 93.8 55.0 6 8 1.8e-05 0.012 16.4 1.4 1 23 347 369 347 370 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF3-215 - 453 1.5e-27 93.8 55.0 7 8 0.00011 0.079 13.8 0.2 1 23 375 397 375 398 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF3-215 - 453 1.5e-27 93.8 55.0 8 8 7.9e-06 0.0055 17.5 0.4 1 23 403 425 403 426 0.95 C2H2-type zinc finger KRAB PF01352.27 42 ZNF3-215 - 453 4.5e-24 83.8 0.2 1 1 1.1e-26 7.9e-24 83.0 0.2 1 42 57 98 57 98 0.98 KRAB box zf-C2H2_6 PF13912.6 27 ZNF3-215 - 453 1.6e-13 50.3 54.8 1 9 3.2e-06 0.0022 17.9 0.7 2 24 207 229 207 232 0.89 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF3-215 - 453 1.6e-13 50.3 54.8 2 9 0.0036 2.5 8.2 2.6 2 12 235 245 235 257 0.86 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF3-215 - 453 1.6e-13 50.3 54.8 3 9 0.00058 0.4 10.7 0.9 2 24 263 285 263 288 0.90 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF3-215 - 453 1.6e-13 50.3 54.8 4 9 0.00026 0.18 11.8 0.3 2 12 291 301 291 302 0.95 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF3-215 - 453 1.6e-13 50.3 54.8 5 9 0.0032 2.2 8.4 0.5 2 13 319 330 319 342 0.80 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF3-215 - 453 1.6e-13 50.3 54.8 6 9 0.0012 0.86 9.7 0.6 2 12 347 357 347 358 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF3-215 - 453 1.6e-13 50.3 54.8 7 9 4.4 3e+03 -1.6 0.1 20 26 361 367 360 368 0.84 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF3-215 - 453 1.6e-13 50.3 54.8 8 9 0.14 94 3.2 0.5 2 22 375 395 375 399 0.85 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF3-215 - 453 1.6e-13 50.3 54.8 9 9 2.9e-05 0.02 14.9 0.5 2 22 403 423 403 427 0.87 C2H2-type zinc finger Zn-ribbon_8 PF09723.10 40 ZNF3-215 - 453 6.4e-10 39.0 39.8 1 7 0.0032 2.2 8.5 4.6 7 35 208 243 207 247 0.89 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF3-215 - 453 6.4e-10 39.0 39.8 2 7 0.00037 0.25 11.5 6.9 6 35 235 271 234 274 0.92 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF3-215 - 453 6.4e-10 39.0 39.8 3 7 0.0061 4.2 7.6 0.8 6 16 263 273 262 289 0.84 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF3-215 - 453 6.4e-10 39.0 39.8 4 7 6.4e-07 0.00044 20.3 1.6 6 38 291 330 289 331 0.92 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF3-215 - 453 6.4e-10 39.0 39.8 5 7 5e-05 0.035 14.2 4.6 6 35 347 383 345 386 0.93 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF3-215 - 453 6.4e-10 39.0 39.8 6 7 0.0003 0.21 11.8 4.9 6 36 375 412 374 414 0.92 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF3-215 - 453 6.4e-10 39.0 39.8 7 7 0.013 8.7 6.6 0.6 6 16 403 413 402 429 0.79 Zinc ribbon domain XPA_N PF01286.18 32 ZNF3-215 - 453 7.8e-09 35.4 33.7 1 8 0.0061 4.2 7.5 0.2 3 12 208 217 206 223 0.87 XPA protein N-terminal XPA_N PF01286.18 32 ZNF3-215 - 453 7.8e-09 35.4 33.7 2 8 0.0021 1.4 9.0 0.2 3 14 236 247 234 252 0.91 XPA protein N-terminal XPA_N PF01286.18 32 ZNF3-215 - 453 7.8e-09 35.4 33.7 3 8 0.09 62 3.8 1.6 3 14 264 275 262 277 0.87 XPA protein N-terminal XPA_N PF01286.18 32 ZNF3-215 - 453 7.8e-09 35.4 33.7 4 8 0.0064 4.4 7.4 0.1 3 14 292 303 290 309 0.85 XPA protein N-terminal XPA_N PF01286.18 32 ZNF3-215 - 453 7.8e-09 35.4 33.7 5 8 0.0096 6.6 6.9 0.1 4 14 321 331 318 334 0.90 XPA protein N-terminal XPA_N PF01286.18 32 ZNF3-215 - 453 7.8e-09 35.4 33.7 6 8 0.0017 1.2 9.3 0.2 3 14 348 359 346 365 0.86 XPA protein N-terminal XPA_N PF01286.18 32 ZNF3-215 - 453 7.8e-09 35.4 33.7 7 8 0.052 36 4.5 0.1 3 14 376 387 374 388 0.86 XPA protein N-terminal XPA_N PF01286.18 32 ZNF3-215 - 453 7.8e-09 35.4 33.7 8 8 0.012 8.4 6.5 0.1 3 14 404 415 402 418 0.87 XPA protein N-terminal # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF3-215.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF3-215.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF3-215.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF3-215.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF3-215.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:03:59 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZNF322-201 - 402 4.1e-64 210.3 79.3 1 13 0.2 3.2e+02 2.0 0.1 14 24 42 52 24 52 0.82 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF322-201 - 402 4.1e-64 210.3 79.3 2 13 5.7e-09 9.2e-06 25.9 1.1 7 25 63 81 62 82 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF322-201 - 402 4.1e-64 210.3 79.3 3 13 6.7e-09 1.1e-05 25.6 2.9 1 26 85 110 85 110 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF322-201 - 402 4.1e-64 210.3 79.3 4 13 7.8e-09 1.3e-05 25.4 0.1 1 25 113 137 113 138 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF322-201 - 402 4.1e-64 210.3 79.3 5 13 1.8e-10 2.9e-07 30.6 0.9 2 25 142 165 141 166 0.90 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF322-201 - 402 4.1e-64 210.3 79.3 6 13 1.8e-11 3e-08 33.7 1.1 1 25 169 193 169 193 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF322-201 - 402 4.1e-64 210.3 79.3 7 13 6.8e-10 1.1e-06 28.8 2.7 2 26 198 222 197 222 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF322-201 - 402 4.1e-64 210.3 79.3 8 13 2e-09 3.2e-06 27.3 2.0 5 25 229 249 225 250 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF322-201 - 402 4.1e-64 210.3 79.3 9 13 1.4e-09 2.3e-06 27.8 0.2 2 26 254 278 253 278 0.90 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF322-201 - 402 4.1e-64 210.3 79.3 10 13 0.032 52 4.5 2.3 1 25 281 303 281 305 0.81 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF322-201 - 402 4.1e-64 210.3 79.3 11 13 0.0011 1.8 9.2 0.0 2 24 308 330 307 331 0.84 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF322-201 - 402 4.1e-64 210.3 79.3 12 13 0.023 37 5.0 0.2 6 24 342 360 342 362 0.89 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF322-201 - 402 4.1e-64 210.3 79.3 13 13 0.0002 0.32 11.5 0.0 1 17 365 381 365 383 0.89 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZNF322-201 - 402 2.9e-44 147.1 80.5 1 11 0.11 1.8e+02 2.9 0.2 1 11 43 53 43 59 0.87 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF322-201 - 402 2.9e-44 147.1 80.5 2 11 3e-09 5e-06 26.7 1.0 1 23 71 93 71 93 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF322-201 - 402 2.9e-44 147.1 80.5 3 11 0.0014 2.4 8.8 4.4 1 23 99 121 99 121 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF322-201 - 402 2.9e-44 147.1 80.5 4 11 5.5e-09 9e-06 25.9 0.2 1 23 127 149 127 149 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF322-201 - 402 2.9e-44 147.1 80.5 5 11 1.8e-08 2.9e-05 24.3 4.5 1 23 155 177 155 177 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF322-201 - 402 2.9e-44 147.1 80.5 6 11 2.5e-08 4e-05 23.8 0.4 1 23 183 205 183 205 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF322-201 - 402 2.9e-44 147.1 80.5 7 11 1.1e-06 0.0017 18.7 4.1 1 23 211 233 211 233 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF322-201 - 402 2.9e-44 147.1 80.5 8 11 5.2e-08 8.4e-05 22.8 0.7 1 23 239 261 239 261 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF322-201 - 402 2.9e-44 147.1 80.5 9 11 1.7e-07 0.00027 21.2 0.8 1 23 267 289 267 289 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF322-201 - 402 2.9e-44 147.1 80.5 10 11 0.0061 9.9 6.8 0.1 8 23 300 315 293 315 0.90 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF322-201 - 402 2.9e-44 147.1 80.5 11 11 7.5e-05 0.12 12.9 0.5 5 23 355 373 353 373 0.95 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZNF322-201 - 402 3.8e-25 86.4 77.6 1 11 0.069 1.1e+02 4.0 0.3 1 14 43 56 43 60 0.83 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF322-201 - 402 3.8e-25 86.4 77.6 2 11 5.7e-06 0.0093 16.7 0.6 1 23 71 93 71 94 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF322-201 - 402 3.8e-25 86.4 77.6 3 11 0.00036 0.58 11.1 3.7 1 23 99 121 99 122 0.97 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF322-201 - 402 3.8e-25 86.4 77.6 4 11 8.9e-07 0.0015 19.2 0.2 1 23 127 149 127 150 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF322-201 - 402 3.8e-25 86.4 77.6 5 11 7.9e-06 0.013 16.3 3.2 1 23 155 177 155 178 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF322-201 - 402 3.8e-25 86.4 77.6 6 11 5.6e-06 0.0092 16.8 0.5 1 23 183 205 183 206 0.97 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF322-201 - 402 3.8e-25 86.4 77.6 7 11 0.0019 3.1 8.9 3.1 1 23 211 233 211 234 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF322-201 - 402 3.8e-25 86.4 77.6 8 11 0.00018 0.29 12.1 1.0 1 23 239 261 239 262 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF322-201 - 402 3.8e-25 86.4 77.6 9 11 2.4e-05 0.039 14.8 0.6 1 23 267 289 267 290 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF322-201 - 402 3.8e-25 86.4 77.6 10 11 0.027 44 5.3 0.3 7 23 299 315 293 316 0.86 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF322-201 - 402 3.8e-25 86.4 77.6 11 11 0.0015 2.4 9.2 0.4 5 23 355 373 354 374 0.89 C2H2-type zinc finger # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF322-201.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF322-201.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF322-201.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF322-201.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF322-201.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:04:00 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZNF322-202 - 402 4.1e-64 210.3 79.3 1 13 0.2 3.2e+02 2.0 0.1 14 24 42 52 24 52 0.82 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF322-202 - 402 4.1e-64 210.3 79.3 2 13 5.7e-09 9.2e-06 25.9 1.1 7 25 63 81 62 82 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF322-202 - 402 4.1e-64 210.3 79.3 3 13 6.7e-09 1.1e-05 25.6 2.9 1 26 85 110 85 110 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF322-202 - 402 4.1e-64 210.3 79.3 4 13 7.8e-09 1.3e-05 25.4 0.1 1 25 113 137 113 138 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF322-202 - 402 4.1e-64 210.3 79.3 5 13 1.8e-10 2.9e-07 30.6 0.9 2 25 142 165 141 166 0.90 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF322-202 - 402 4.1e-64 210.3 79.3 6 13 1.8e-11 3e-08 33.7 1.1 1 25 169 193 169 193 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF322-202 - 402 4.1e-64 210.3 79.3 7 13 6.8e-10 1.1e-06 28.8 2.7 2 26 198 222 197 222 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF322-202 - 402 4.1e-64 210.3 79.3 8 13 2e-09 3.2e-06 27.3 2.0 5 25 229 249 225 250 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF322-202 - 402 4.1e-64 210.3 79.3 9 13 1.4e-09 2.3e-06 27.8 0.2 2 26 254 278 253 278 0.90 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF322-202 - 402 4.1e-64 210.3 79.3 10 13 0.032 52 4.5 2.3 1 25 281 303 281 305 0.81 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF322-202 - 402 4.1e-64 210.3 79.3 11 13 0.0011 1.8 9.2 0.0 2 24 308 330 307 331 0.84 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF322-202 - 402 4.1e-64 210.3 79.3 12 13 0.023 37 5.0 0.2 6 24 342 360 342 362 0.89 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF322-202 - 402 4.1e-64 210.3 79.3 13 13 0.0002 0.32 11.5 0.0 1 17 365 381 365 383 0.89 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZNF322-202 - 402 2.9e-44 147.1 80.5 1 11 0.11 1.8e+02 2.9 0.2 1 11 43 53 43 59 0.87 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF322-202 - 402 2.9e-44 147.1 80.5 2 11 3e-09 5e-06 26.7 1.0 1 23 71 93 71 93 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF322-202 - 402 2.9e-44 147.1 80.5 3 11 0.0014 2.4 8.8 4.4 1 23 99 121 99 121 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF322-202 - 402 2.9e-44 147.1 80.5 4 11 5.5e-09 9e-06 25.9 0.2 1 23 127 149 127 149 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF322-202 - 402 2.9e-44 147.1 80.5 5 11 1.8e-08 2.9e-05 24.3 4.5 1 23 155 177 155 177 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF322-202 - 402 2.9e-44 147.1 80.5 6 11 2.5e-08 4e-05 23.8 0.4 1 23 183 205 183 205 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF322-202 - 402 2.9e-44 147.1 80.5 7 11 1.1e-06 0.0017 18.7 4.1 1 23 211 233 211 233 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF322-202 - 402 2.9e-44 147.1 80.5 8 11 5.2e-08 8.4e-05 22.8 0.7 1 23 239 261 239 261 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF322-202 - 402 2.9e-44 147.1 80.5 9 11 1.7e-07 0.00027 21.2 0.8 1 23 267 289 267 289 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF322-202 - 402 2.9e-44 147.1 80.5 10 11 0.0061 9.9 6.8 0.1 8 23 300 315 293 315 0.90 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF322-202 - 402 2.9e-44 147.1 80.5 11 11 7.5e-05 0.12 12.9 0.5 5 23 355 373 353 373 0.95 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZNF322-202 - 402 3.8e-25 86.4 77.6 1 11 0.069 1.1e+02 4.0 0.3 1 14 43 56 43 60 0.83 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF322-202 - 402 3.8e-25 86.4 77.6 2 11 5.7e-06 0.0093 16.7 0.6 1 23 71 93 71 94 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF322-202 - 402 3.8e-25 86.4 77.6 3 11 0.00036 0.58 11.1 3.7 1 23 99 121 99 122 0.97 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF322-202 - 402 3.8e-25 86.4 77.6 4 11 8.9e-07 0.0015 19.2 0.2 1 23 127 149 127 150 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF322-202 - 402 3.8e-25 86.4 77.6 5 11 7.9e-06 0.013 16.3 3.2 1 23 155 177 155 178 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF322-202 - 402 3.8e-25 86.4 77.6 6 11 5.6e-06 0.0092 16.8 0.5 1 23 183 205 183 206 0.97 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF322-202 - 402 3.8e-25 86.4 77.6 7 11 0.0019 3.1 8.9 3.1 1 23 211 233 211 234 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF322-202 - 402 3.8e-25 86.4 77.6 8 11 0.00018 0.29 12.1 1.0 1 23 239 261 239 262 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF322-202 - 402 3.8e-25 86.4 77.6 9 11 2.4e-05 0.039 14.8 0.6 1 23 267 289 267 290 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF322-202 - 402 3.8e-25 86.4 77.6 10 11 0.027 44 5.3 0.3 7 23 299 315 293 316 0.86 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF322-202 - 402 3.8e-25 86.4 77.6 11 11 0.0015 2.4 9.2 0.4 5 23 355 373 354 374 0.89 C2H2-type zinc finger # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF322-202.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF322-202.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF322-202.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF322-202.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF322-202.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:04:00 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF322-203.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF322-203.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF322-203.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF322-203.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF322-203.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:04:00 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF322-204.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF322-204.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF322-204.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF322-204.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF322-204.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:04:01 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZNF322-205 - 402 4.1e-64 210.3 79.3 1 13 0.2 3.2e+02 2.0 0.1 14 24 42 52 24 52 0.82 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF322-205 - 402 4.1e-64 210.3 79.3 2 13 5.7e-09 9.2e-06 25.9 1.1 7 25 63 81 62 82 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF322-205 - 402 4.1e-64 210.3 79.3 3 13 6.7e-09 1.1e-05 25.6 2.9 1 26 85 110 85 110 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF322-205 - 402 4.1e-64 210.3 79.3 4 13 7.8e-09 1.3e-05 25.4 0.1 1 25 113 137 113 138 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF322-205 - 402 4.1e-64 210.3 79.3 5 13 1.8e-10 2.9e-07 30.6 0.9 2 25 142 165 141 166 0.90 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF322-205 - 402 4.1e-64 210.3 79.3 6 13 1.8e-11 3e-08 33.7 1.1 1 25 169 193 169 193 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF322-205 - 402 4.1e-64 210.3 79.3 7 13 6.8e-10 1.1e-06 28.8 2.7 2 26 198 222 197 222 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF322-205 - 402 4.1e-64 210.3 79.3 8 13 2e-09 3.2e-06 27.3 2.0 5 25 229 249 225 250 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF322-205 - 402 4.1e-64 210.3 79.3 9 13 1.4e-09 2.3e-06 27.8 0.2 2 26 254 278 253 278 0.90 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF322-205 - 402 4.1e-64 210.3 79.3 10 13 0.032 52 4.5 2.3 1 25 281 303 281 305 0.81 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF322-205 - 402 4.1e-64 210.3 79.3 11 13 0.0011 1.8 9.2 0.0 2 24 308 330 307 331 0.84 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF322-205 - 402 4.1e-64 210.3 79.3 12 13 0.023 37 5.0 0.2 6 24 342 360 342 362 0.89 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF322-205 - 402 4.1e-64 210.3 79.3 13 13 0.0002 0.32 11.5 0.0 1 17 365 381 365 383 0.89 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZNF322-205 - 402 2.9e-44 147.1 80.5 1 11 0.11 1.8e+02 2.9 0.2 1 11 43 53 43 59 0.87 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF322-205 - 402 2.9e-44 147.1 80.5 2 11 3e-09 5e-06 26.7 1.0 1 23 71 93 71 93 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF322-205 - 402 2.9e-44 147.1 80.5 3 11 0.0014 2.4 8.8 4.4 1 23 99 121 99 121 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF322-205 - 402 2.9e-44 147.1 80.5 4 11 5.5e-09 9e-06 25.9 0.2 1 23 127 149 127 149 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF322-205 - 402 2.9e-44 147.1 80.5 5 11 1.8e-08 2.9e-05 24.3 4.5 1 23 155 177 155 177 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF322-205 - 402 2.9e-44 147.1 80.5 6 11 2.5e-08 4e-05 23.8 0.4 1 23 183 205 183 205 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF322-205 - 402 2.9e-44 147.1 80.5 7 11 1.1e-06 0.0017 18.7 4.1 1 23 211 233 211 233 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF322-205 - 402 2.9e-44 147.1 80.5 8 11 5.2e-08 8.4e-05 22.8 0.7 1 23 239 261 239 261 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF322-205 - 402 2.9e-44 147.1 80.5 9 11 1.7e-07 0.00027 21.2 0.8 1 23 267 289 267 289 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF322-205 - 402 2.9e-44 147.1 80.5 10 11 0.0061 9.9 6.8 0.1 8 23 300 315 293 315 0.90 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF322-205 - 402 2.9e-44 147.1 80.5 11 11 7.5e-05 0.12 12.9 0.5 5 23 355 373 353 373 0.95 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZNF322-205 - 402 3.8e-25 86.4 77.6 1 11 0.069 1.1e+02 4.0 0.3 1 14 43 56 43 60 0.83 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF322-205 - 402 3.8e-25 86.4 77.6 2 11 5.7e-06 0.0093 16.7 0.6 1 23 71 93 71 94 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF322-205 - 402 3.8e-25 86.4 77.6 3 11 0.00036 0.58 11.1 3.7 1 23 99 121 99 122 0.97 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF322-205 - 402 3.8e-25 86.4 77.6 4 11 8.9e-07 0.0015 19.2 0.2 1 23 127 149 127 150 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF322-205 - 402 3.8e-25 86.4 77.6 5 11 7.9e-06 0.013 16.3 3.2 1 23 155 177 155 178 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF322-205 - 402 3.8e-25 86.4 77.6 6 11 5.6e-06 0.0092 16.8 0.5 1 23 183 205 183 206 0.97 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF322-205 - 402 3.8e-25 86.4 77.6 7 11 0.0019 3.1 8.9 3.1 1 23 211 233 211 234 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF322-205 - 402 3.8e-25 86.4 77.6 8 11 0.00018 0.29 12.1 1.0 1 23 239 261 239 262 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF322-205 - 402 3.8e-25 86.4 77.6 9 11 2.4e-05 0.039 14.8 0.6 1 23 267 289 267 290 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF322-205 - 402 3.8e-25 86.4 77.6 10 11 0.027 44 5.3 0.3 7 23 299 315 293 316 0.86 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF322-205 - 402 3.8e-25 86.4 77.6 11 11 0.0015 2.4 9.2 0.4 5 23 355 373 354 374 0.89 C2H2-type zinc finger # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF322-205.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF322-205.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF322-205.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF322-205.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF322-205.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:04:01 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF322-206.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF322-206.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF322-206.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF322-206.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF322-206.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:04:02 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZNF322-207 - 402 4.1e-64 210.3 79.3 1 13 0.2 3.2e+02 2.0 0.1 14 24 42 52 24 52 0.82 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF322-207 - 402 4.1e-64 210.3 79.3 2 13 5.7e-09 9.2e-06 25.9 1.1 7 25 63 81 62 82 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF322-207 - 402 4.1e-64 210.3 79.3 3 13 6.7e-09 1.1e-05 25.6 2.9 1 26 85 110 85 110 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF322-207 - 402 4.1e-64 210.3 79.3 4 13 7.8e-09 1.3e-05 25.4 0.1 1 25 113 137 113 138 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF322-207 - 402 4.1e-64 210.3 79.3 5 13 1.8e-10 2.9e-07 30.6 0.9 2 25 142 165 141 166 0.90 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF322-207 - 402 4.1e-64 210.3 79.3 6 13 1.8e-11 3e-08 33.7 1.1 1 25 169 193 169 193 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF322-207 - 402 4.1e-64 210.3 79.3 7 13 6.8e-10 1.1e-06 28.8 2.7 2 26 198 222 197 222 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF322-207 - 402 4.1e-64 210.3 79.3 8 13 2e-09 3.2e-06 27.3 2.0 5 25 229 249 225 250 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF322-207 - 402 4.1e-64 210.3 79.3 9 13 1.4e-09 2.3e-06 27.8 0.2 2 26 254 278 253 278 0.90 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF322-207 - 402 4.1e-64 210.3 79.3 10 13 0.032 52 4.5 2.3 1 25 281 303 281 305 0.81 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF322-207 - 402 4.1e-64 210.3 79.3 11 13 0.0011 1.8 9.2 0.0 2 24 308 330 307 331 0.84 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF322-207 - 402 4.1e-64 210.3 79.3 12 13 0.023 37 5.0 0.2 6 24 342 360 342 362 0.89 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF322-207 - 402 4.1e-64 210.3 79.3 13 13 0.0002 0.32 11.5 0.0 1 17 365 381 365 383 0.89 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZNF322-207 - 402 2.9e-44 147.1 80.5 1 11 0.11 1.8e+02 2.9 0.2 1 11 43 53 43 59 0.87 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF322-207 - 402 2.9e-44 147.1 80.5 2 11 3e-09 5e-06 26.7 1.0 1 23 71 93 71 93 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF322-207 - 402 2.9e-44 147.1 80.5 3 11 0.0014 2.4 8.8 4.4 1 23 99 121 99 121 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF322-207 - 402 2.9e-44 147.1 80.5 4 11 5.5e-09 9e-06 25.9 0.2 1 23 127 149 127 149 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF322-207 - 402 2.9e-44 147.1 80.5 5 11 1.8e-08 2.9e-05 24.3 4.5 1 23 155 177 155 177 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF322-207 - 402 2.9e-44 147.1 80.5 6 11 2.5e-08 4e-05 23.8 0.4 1 23 183 205 183 205 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF322-207 - 402 2.9e-44 147.1 80.5 7 11 1.1e-06 0.0017 18.7 4.1 1 23 211 233 211 233 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF322-207 - 402 2.9e-44 147.1 80.5 8 11 5.2e-08 8.4e-05 22.8 0.7 1 23 239 261 239 261 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF322-207 - 402 2.9e-44 147.1 80.5 9 11 1.7e-07 0.00027 21.2 0.8 1 23 267 289 267 289 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF322-207 - 402 2.9e-44 147.1 80.5 10 11 0.0061 9.9 6.8 0.1 8 23 300 315 293 315 0.90 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF322-207 - 402 2.9e-44 147.1 80.5 11 11 7.5e-05 0.12 12.9 0.5 5 23 355 373 353 373 0.95 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZNF322-207 - 402 3.8e-25 86.4 77.6 1 11 0.069 1.1e+02 4.0 0.3 1 14 43 56 43 60 0.83 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF322-207 - 402 3.8e-25 86.4 77.6 2 11 5.7e-06 0.0093 16.7 0.6 1 23 71 93 71 94 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF322-207 - 402 3.8e-25 86.4 77.6 3 11 0.00036 0.58 11.1 3.7 1 23 99 121 99 122 0.97 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF322-207 - 402 3.8e-25 86.4 77.6 4 11 8.9e-07 0.0015 19.2 0.2 1 23 127 149 127 150 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF322-207 - 402 3.8e-25 86.4 77.6 5 11 7.9e-06 0.013 16.3 3.2 1 23 155 177 155 178 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF322-207 - 402 3.8e-25 86.4 77.6 6 11 5.6e-06 0.0092 16.8 0.5 1 23 183 205 183 206 0.97 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF322-207 - 402 3.8e-25 86.4 77.6 7 11 0.0019 3.1 8.9 3.1 1 23 211 233 211 234 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF322-207 - 402 3.8e-25 86.4 77.6 8 11 0.00018 0.29 12.1 1.0 1 23 239 261 239 262 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF322-207 - 402 3.8e-25 86.4 77.6 9 11 2.4e-05 0.039 14.8 0.6 1 23 267 289 267 290 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF322-207 - 402 3.8e-25 86.4 77.6 10 11 0.027 44 5.3 0.3 7 23 299 315 293 316 0.86 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF322-207 - 402 3.8e-25 86.4 77.6 11 11 0.0015 2.4 9.2 0.4 5 23 355 373 354 374 0.89 C2H2-type zinc finger # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF322-207.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF322-207.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF322-207.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF322-207.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF322-207.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:04:02 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZNF322-208 - 402 4.1e-64 210.3 79.3 1 13 0.2 3.2e+02 2.0 0.1 14 24 42 52 24 52 0.82 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF322-208 - 402 4.1e-64 210.3 79.3 2 13 5.7e-09 9.2e-06 25.9 1.1 7 25 63 81 62 82 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF322-208 - 402 4.1e-64 210.3 79.3 3 13 6.7e-09 1.1e-05 25.6 2.9 1 26 85 110 85 110 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF322-208 - 402 4.1e-64 210.3 79.3 4 13 7.8e-09 1.3e-05 25.4 0.1 1 25 113 137 113 138 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF322-208 - 402 4.1e-64 210.3 79.3 5 13 1.8e-10 2.9e-07 30.6 0.9 2 25 142 165 141 166 0.90 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF322-208 - 402 4.1e-64 210.3 79.3 6 13 1.8e-11 3e-08 33.7 1.1 1 25 169 193 169 193 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF322-208 - 402 4.1e-64 210.3 79.3 7 13 6.8e-10 1.1e-06 28.8 2.7 2 26 198 222 197 222 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF322-208 - 402 4.1e-64 210.3 79.3 8 13 2e-09 3.2e-06 27.3 2.0 5 25 229 249 225 250 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF322-208 - 402 4.1e-64 210.3 79.3 9 13 1.4e-09 2.3e-06 27.8 0.2 2 26 254 278 253 278 0.90 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF322-208 - 402 4.1e-64 210.3 79.3 10 13 0.032 52 4.5 2.3 1 25 281 303 281 305 0.81 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF322-208 - 402 4.1e-64 210.3 79.3 11 13 0.0011 1.8 9.2 0.0 2 24 308 330 307 331 0.84 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF322-208 - 402 4.1e-64 210.3 79.3 12 13 0.023 37 5.0 0.2 6 24 342 360 342 362 0.89 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF322-208 - 402 4.1e-64 210.3 79.3 13 13 0.0002 0.32 11.5 0.0 1 17 365 381 365 383 0.89 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZNF322-208 - 402 2.9e-44 147.1 80.5 1 11 0.11 1.8e+02 2.9 0.2 1 11 43 53 43 59 0.87 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF322-208 - 402 2.9e-44 147.1 80.5 2 11 3e-09 5e-06 26.7 1.0 1 23 71 93 71 93 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF322-208 - 402 2.9e-44 147.1 80.5 3 11 0.0014 2.4 8.8 4.4 1 23 99 121 99 121 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF322-208 - 402 2.9e-44 147.1 80.5 4 11 5.5e-09 9e-06 25.9 0.2 1 23 127 149 127 149 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF322-208 - 402 2.9e-44 147.1 80.5 5 11 1.8e-08 2.9e-05 24.3 4.5 1 23 155 177 155 177 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF322-208 - 402 2.9e-44 147.1 80.5 6 11 2.5e-08 4e-05 23.8 0.4 1 23 183 205 183 205 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF322-208 - 402 2.9e-44 147.1 80.5 7 11 1.1e-06 0.0017 18.7 4.1 1 23 211 233 211 233 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF322-208 - 402 2.9e-44 147.1 80.5 8 11 5.2e-08 8.4e-05 22.8 0.7 1 23 239 261 239 261 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF322-208 - 402 2.9e-44 147.1 80.5 9 11 1.7e-07 0.00027 21.2 0.8 1 23 267 289 267 289 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF322-208 - 402 2.9e-44 147.1 80.5 10 11 0.0061 9.9 6.8 0.1 8 23 300 315 293 315 0.90 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF322-208 - 402 2.9e-44 147.1 80.5 11 11 7.5e-05 0.12 12.9 0.5 5 23 355 373 353 373 0.95 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZNF322-208 - 402 3.8e-25 86.4 77.6 1 11 0.069 1.1e+02 4.0 0.3 1 14 43 56 43 60 0.83 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF322-208 - 402 3.8e-25 86.4 77.6 2 11 5.7e-06 0.0093 16.7 0.6 1 23 71 93 71 94 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF322-208 - 402 3.8e-25 86.4 77.6 3 11 0.00036 0.58 11.1 3.7 1 23 99 121 99 122 0.97 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF322-208 - 402 3.8e-25 86.4 77.6 4 11 8.9e-07 0.0015 19.2 0.2 1 23 127 149 127 150 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF322-208 - 402 3.8e-25 86.4 77.6 5 11 7.9e-06 0.013 16.3 3.2 1 23 155 177 155 178 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF322-208 - 402 3.8e-25 86.4 77.6 6 11 5.6e-06 0.0092 16.8 0.5 1 23 183 205 183 206 0.97 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF322-208 - 402 3.8e-25 86.4 77.6 7 11 0.0019 3.1 8.9 3.1 1 23 211 233 211 234 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF322-208 - 402 3.8e-25 86.4 77.6 8 11 0.00018 0.29 12.1 1.0 1 23 239 261 239 262 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF322-208 - 402 3.8e-25 86.4 77.6 9 11 2.4e-05 0.039 14.8 0.6 1 23 267 289 267 290 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF322-208 - 402 3.8e-25 86.4 77.6 10 11 0.027 44 5.3 0.3 7 23 299 315 293 316 0.86 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF322-208 - 402 3.8e-25 86.4 77.6 11 11 0.0015 2.4 9.2 0.4 5 23 355 373 354 374 0.89 C2H2-type zinc finger # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF322-208.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF322-208.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF322-208.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF322-208.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF322-208.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:04:02 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZNF324-201 - 553 5.9e-67 219.3 51.7 1 10 4.4e-05 0.023 15.1 0.1 8 25 250 267 248 268 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF324-201 - 553 5.9e-67 219.3 51.7 2 10 3.1e-11 1.6e-08 34.5 0.2 2 25 272 295 271 296 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF324-201 - 553 5.9e-67 219.3 51.7 3 10 7.1e-11 3.7e-08 33.4 1.2 1 26 299 324 299 324 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF324-201 - 553 5.9e-67 219.3 51.7 4 10 5.3e-10 2.8e-07 30.7 0.8 1 26 327 352 327 352 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF324-201 - 553 5.9e-67 219.3 51.7 5 10 1.1e-05 0.0059 17.0 0.1 1 24 355 378 355 378 0.97 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF324-201 - 553 5.9e-67 219.3 51.7 6 10 2.6e-09 1.4e-06 28.5 0.1 1 25 383 407 383 408 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF324-201 - 553 5.9e-67 219.3 51.7 7 10 6e-11 3.2e-08 33.7 1.3 2 26 412 436 411 436 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF324-201 - 553 5.9e-67 219.3 51.7 8 10 7.5e-09 4e-06 27.0 0.1 1 25 439 463 439 464 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF324-201 - 553 5.9e-67 219.3 51.7 9 10 1.2e-08 6.1e-06 26.4 0.2 4 24 470 490 468 491 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF324-201 - 553 5.9e-67 219.3 51.7 10 10 0.035 18 6.0 0.5 4 13 498 507 495 510 0.82 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZNF324-201 - 553 3.2e-47 156.4 60.5 1 9 4.6e-07 0.00024 21.4 0.9 1 23 257 279 257 279 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF324-201 - 553 3.2e-47 156.4 60.5 2 9 1.8e-08 9.5e-06 25.8 1.2 1 23 285 307 285 307 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF324-201 - 553 3.2e-47 156.4 60.5 3 9 2.6e-09 1.4e-06 28.4 0.8 1 23 313 335 313 335 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF324-201 - 553 3.2e-47 156.4 60.5 4 9 6e-07 0.00032 21.0 1.7 1 23 341 363 341 363 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF324-201 - 553 3.2e-47 156.4 60.5 5 9 9.6e-07 0.00051 20.4 3.9 1 23 369 391 369 391 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF324-201 - 553 3.2e-47 156.4 60.5 6 9 4e-06 0.0021 18.4 0.1 1 23 397 419 397 419 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF324-201 - 553 3.2e-47 156.4 60.5 7 9 3.9e-08 2.1e-05 24.7 0.9 1 23 425 447 425 447 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF324-201 - 553 3.2e-47 156.4 60.5 8 9 4.8e-05 0.025 15.0 0.1 1 23 453 475 453 475 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF324-201 - 553 3.2e-47 156.4 60.5 9 9 3.4e-06 0.0018 18.6 1.1 1 23 481 503 481 503 0.98 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZNF324-201 - 553 6.6e-28 95.0 61.7 1 9 4.4e-06 0.0023 18.6 1.1 1 23 257 279 257 280 0.97 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF324-201 - 553 6.6e-28 95.0 61.7 2 9 7e-05 0.037 14.9 1.2 1 23 285 307 285 308 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF324-201 - 553 6.6e-28 95.0 61.7 3 9 1.3e-05 0.0071 17.1 0.9 1 23 313 335 313 336 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF324-201 - 553 6.6e-28 95.0 61.7 4 9 7.9e-05 0.042 14.7 1.1 1 23 341 363 341 364 0.90 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF324-201 - 553 6.6e-28 95.0 61.7 5 9 2.9e-05 0.015 16.1 3.0 1 23 369 391 369 392 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF324-201 - 553 6.6e-28 95.0 61.7 6 9 0.00039 0.21 12.5 0.3 1 23 397 419 397 420 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF324-201 - 553 6.6e-28 95.0 61.7 7 9 3.8e-05 0.02 15.7 1.0 1 23 425 447 425 448 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF324-201 - 553 6.6e-28 95.0 61.7 8 9 0.0046 2.4 9.2 0.1 1 23 453 475 453 476 0.85 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF324-201 - 553 6.6e-28 95.0 61.7 9 9 3.9e-05 0.02 15.7 1.0 1 23 481 503 481 504 0.95 C2H2-type zinc finger KRAB PF01352.27 42 ZNF324-201 - 553 6.2e-22 77.0 0.2 1 1 2e-24 1.1e-21 76.2 0.2 2 42 1 41 1 41 0.98 KRAB box zf-C2H2_jaz PF12171.8 27 ZNF324-201 - 553 7.2e-11 42.1 22.9 1 9 2.5e-05 0.013 15.7 0.4 2 24 257 279 256 279 0.95 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF324-201 - 553 7.2e-11 42.1 22.9 2 9 0.32 1.7e+02 2.7 0.2 2 21 285 304 284 305 0.88 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF324-201 - 553 7.2e-11 42.1 22.9 3 9 0.0016 0.82 10.0 0.0 2 22 313 333 312 333 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF324-201 - 553 7.2e-11 42.1 22.9 4 9 0.012 6.3 7.2 0.1 2 22 341 361 340 361 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF324-201 - 553 7.2e-11 42.1 22.9 5 9 0.9 4.8e+02 1.2 0.6 2 24 369 391 368 391 0.90 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF324-201 - 553 7.2e-11 42.1 22.9 6 9 6.6 3.5e+03 -1.5 0.0 2 11 397 406 396 412 0.84 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF324-201 - 553 7.2e-11 42.1 22.9 7 9 0.0066 3.5 8.0 0.0 2 21 425 444 424 445 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF324-201 - 553 7.2e-11 42.1 22.9 8 9 0.023 12 6.3 0.0 2 21 453 472 452 473 0.91 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF324-201 - 553 7.2e-11 42.1 22.9 9 9 6.2 3.3e+03 -1.4 0.1 2 11 481 490 480 492 0.85 Zinc-finger double-stranded RNA-binding Zn-ribbon_8 PF09723.10 40 ZNF324-201 - 553 1.9e-10 40.6 32.2 1 6 0.22 1.2e+02 3.0 0.1 6 16 257 267 256 274 0.86 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF324-201 - 553 1.9e-10 40.6 32.2 2 6 3.4e-06 0.0018 18.4 2.3 6 36 285 322 284 324 0.89 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF324-201 - 553 1.9e-10 40.6 32.2 3 6 0.0015 0.81 9.9 4.0 6 35 341 377 340 381 0.83 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF324-201 - 553 1.9e-10 40.6 32.2 4 6 0.07 37 4.6 0.8 6 15 369 378 368 388 0.88 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF324-201 - 553 1.9e-10 40.6 32.2 5 6 0.00016 0.083 13.0 1.2 6 34 397 432 396 435 0.90 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF324-201 - 553 1.9e-10 40.6 32.2 6 6 0.00041 0.22 11.7 0.4 6 37 453 491 452 494 0.84 Zinc ribbon domain zf-C2H2_6 PF13912.6 27 ZNF324-201 - 553 3.9e-10 39.5 59.3 1 10 6.1 3.2e+03 -1.7 0.0 8 18 204 214 204 215 0.86 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF324-201 - 553 3.9e-10 39.5 59.3 2 10 0.00013 0.067 13.2 0.6 2 24 257 279 256 282 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF324-201 - 553 3.9e-10 39.5 59.3 3 10 0.022 12 6.1 2.3 2 12 285 295 285 309 0.80 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF324-201 - 553 3.9e-10 39.5 59.3 4 10 0.0081 4.3 7.5 0.2 2 12 313 323 313 337 0.82 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF324-201 - 553 3.9e-10 39.5 59.3 5 10 2.2e-05 0.011 15.7 2.1 2 24 341 363 340 365 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF324-201 - 553 3.9e-10 39.5 59.3 6 10 0.38 2e+02 2.1 2.9 2 24 369 391 369 394 0.79 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF324-201 - 553 3.9e-10 39.5 59.3 7 10 0.0007 0.37 10.9 0.5 2 24 397 419 397 422 0.92 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF324-201 - 553 3.9e-10 39.5 59.3 8 10 0.063 33 4.6 0.5 2 17 425 440 425 444 0.76 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF324-201 - 553 3.9e-10 39.5 59.3 9 10 0.0077 4.1 7.5 0.1 2 24 453 475 453 478 0.91 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF324-201 - 553 3.9e-10 39.5 59.3 10 10 0.013 6.7 6.8 0.3 2 20 481 499 481 505 0.78 C2H2-type zinc finger # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF324-201.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF324-201.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF324-201.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF324-201.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF324-201.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:04:03 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- KRAB PF01352.27 42 ZNF324-202 - 286 2.6e-22 78.2 0.2 1 1 1.4e-25 4.3e-22 77.5 0.2 2 42 1 41 1 41 0.98 KRAB box # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF324-202.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF324-202.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF324-202.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF324-202.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF324-202.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:04:03 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZNF324-203 - 553 5.9e-67 219.3 51.7 1 10 4.4e-05 0.023 15.1 0.1 8 25 250 267 248 268 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF324-203 - 553 5.9e-67 219.3 51.7 2 10 3.1e-11 1.6e-08 34.5 0.2 2 25 272 295 271 296 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF324-203 - 553 5.9e-67 219.3 51.7 3 10 7.1e-11 3.7e-08 33.4 1.2 1 26 299 324 299 324 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF324-203 - 553 5.9e-67 219.3 51.7 4 10 5.3e-10 2.8e-07 30.7 0.8 1 26 327 352 327 352 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF324-203 - 553 5.9e-67 219.3 51.7 5 10 1.1e-05 0.0059 17.0 0.1 1 24 355 378 355 378 0.97 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF324-203 - 553 5.9e-67 219.3 51.7 6 10 2.6e-09 1.4e-06 28.5 0.1 1 25 383 407 383 408 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF324-203 - 553 5.9e-67 219.3 51.7 7 10 6e-11 3.2e-08 33.7 1.3 2 26 412 436 411 436 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF324-203 - 553 5.9e-67 219.3 51.7 8 10 7.5e-09 4e-06 27.0 0.1 1 25 439 463 439 464 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF324-203 - 553 5.9e-67 219.3 51.7 9 10 1.2e-08 6.1e-06 26.4 0.2 4 24 470 490 468 491 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF324-203 - 553 5.9e-67 219.3 51.7 10 10 0.035 18 6.0 0.5 4 13 498 507 495 510 0.82 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZNF324-203 - 553 3.2e-47 156.4 60.5 1 9 4.6e-07 0.00024 21.4 0.9 1 23 257 279 257 279 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF324-203 - 553 3.2e-47 156.4 60.5 2 9 1.8e-08 9.5e-06 25.8 1.2 1 23 285 307 285 307 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF324-203 - 553 3.2e-47 156.4 60.5 3 9 2.6e-09 1.4e-06 28.4 0.8 1 23 313 335 313 335 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF324-203 - 553 3.2e-47 156.4 60.5 4 9 6e-07 0.00032 21.0 1.7 1 23 341 363 341 363 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF324-203 - 553 3.2e-47 156.4 60.5 5 9 9.6e-07 0.00051 20.4 3.9 1 23 369 391 369 391 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF324-203 - 553 3.2e-47 156.4 60.5 6 9 4e-06 0.0021 18.4 0.1 1 23 397 419 397 419 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF324-203 - 553 3.2e-47 156.4 60.5 7 9 3.9e-08 2.1e-05 24.7 0.9 1 23 425 447 425 447 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF324-203 - 553 3.2e-47 156.4 60.5 8 9 4.8e-05 0.025 15.0 0.1 1 23 453 475 453 475 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF324-203 - 553 3.2e-47 156.4 60.5 9 9 3.4e-06 0.0018 18.6 1.1 1 23 481 503 481 503 0.98 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZNF324-203 - 553 6.6e-28 95.0 61.7 1 9 4.4e-06 0.0023 18.6 1.1 1 23 257 279 257 280 0.97 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF324-203 - 553 6.6e-28 95.0 61.7 2 9 7e-05 0.037 14.9 1.2 1 23 285 307 285 308 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF324-203 - 553 6.6e-28 95.0 61.7 3 9 1.3e-05 0.0071 17.1 0.9 1 23 313 335 313 336 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF324-203 - 553 6.6e-28 95.0 61.7 4 9 7.9e-05 0.042 14.7 1.1 1 23 341 363 341 364 0.90 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF324-203 - 553 6.6e-28 95.0 61.7 5 9 2.9e-05 0.015 16.1 3.0 1 23 369 391 369 392 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF324-203 - 553 6.6e-28 95.0 61.7 6 9 0.00039 0.21 12.5 0.3 1 23 397 419 397 420 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF324-203 - 553 6.6e-28 95.0 61.7 7 9 3.8e-05 0.02 15.7 1.0 1 23 425 447 425 448 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF324-203 - 553 6.6e-28 95.0 61.7 8 9 0.0046 2.4 9.2 0.1 1 23 453 475 453 476 0.85 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF324-203 - 553 6.6e-28 95.0 61.7 9 9 3.9e-05 0.02 15.7 1.0 1 23 481 503 481 504 0.95 C2H2-type zinc finger KRAB PF01352.27 42 ZNF324-203 - 553 6.2e-22 77.0 0.2 1 1 2e-24 1.1e-21 76.2 0.2 2 42 1 41 1 41 0.98 KRAB box zf-C2H2_jaz PF12171.8 27 ZNF324-203 - 553 7.2e-11 42.1 22.9 1 9 2.5e-05 0.013 15.7 0.4 2 24 257 279 256 279 0.95 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF324-203 - 553 7.2e-11 42.1 22.9 2 9 0.32 1.7e+02 2.7 0.2 2 21 285 304 284 305 0.88 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF324-203 - 553 7.2e-11 42.1 22.9 3 9 0.0016 0.82 10.0 0.0 2 22 313 333 312 333 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF324-203 - 553 7.2e-11 42.1 22.9 4 9 0.012 6.3 7.2 0.1 2 22 341 361 340 361 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF324-203 - 553 7.2e-11 42.1 22.9 5 9 0.9 4.8e+02 1.2 0.6 2 24 369 391 368 391 0.90 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF324-203 - 553 7.2e-11 42.1 22.9 6 9 6.6 3.5e+03 -1.5 0.0 2 11 397 406 396 412 0.84 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF324-203 - 553 7.2e-11 42.1 22.9 7 9 0.0066 3.5 8.0 0.0 2 21 425 444 424 445 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF324-203 - 553 7.2e-11 42.1 22.9 8 9 0.023 12 6.3 0.0 2 21 453 472 452 473 0.91 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF324-203 - 553 7.2e-11 42.1 22.9 9 9 6.2 3.3e+03 -1.4 0.1 2 11 481 490 480 492 0.85 Zinc-finger double-stranded RNA-binding Zn-ribbon_8 PF09723.10 40 ZNF324-203 - 553 1.9e-10 40.6 32.2 1 6 0.22 1.2e+02 3.0 0.1 6 16 257 267 256 274 0.86 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF324-203 - 553 1.9e-10 40.6 32.2 2 6 3.4e-06 0.0018 18.4 2.3 6 36 285 322 284 324 0.89 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF324-203 - 553 1.9e-10 40.6 32.2 3 6 0.0015 0.81 9.9 4.0 6 35 341 377 340 381 0.83 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF324-203 - 553 1.9e-10 40.6 32.2 4 6 0.07 37 4.6 0.8 6 15 369 378 368 388 0.88 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF324-203 - 553 1.9e-10 40.6 32.2 5 6 0.00016 0.083 13.0 1.2 6 34 397 432 396 435 0.90 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF324-203 - 553 1.9e-10 40.6 32.2 6 6 0.00041 0.22 11.7 0.4 6 37 453 491 452 494 0.84 Zinc ribbon domain zf-C2H2_6 PF13912.6 27 ZNF324-203 - 553 3.9e-10 39.5 59.3 1 10 6.1 3.2e+03 -1.7 0.0 8 18 204 214 204 215 0.86 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF324-203 - 553 3.9e-10 39.5 59.3 2 10 0.00013 0.067 13.2 0.6 2 24 257 279 256 282 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF324-203 - 553 3.9e-10 39.5 59.3 3 10 0.022 12 6.1 2.3 2 12 285 295 285 309 0.80 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF324-203 - 553 3.9e-10 39.5 59.3 4 10 0.0081 4.3 7.5 0.2 2 12 313 323 313 337 0.82 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF324-203 - 553 3.9e-10 39.5 59.3 5 10 2.2e-05 0.011 15.7 2.1 2 24 341 363 340 365 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF324-203 - 553 3.9e-10 39.5 59.3 6 10 0.38 2e+02 2.1 2.9 2 24 369 391 369 394 0.79 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF324-203 - 553 3.9e-10 39.5 59.3 7 10 0.0007 0.37 10.9 0.5 2 24 397 419 397 422 0.92 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF324-203 - 553 3.9e-10 39.5 59.3 8 10 0.063 33 4.6 0.5 2 17 425 440 425 444 0.76 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF324-203 - 553 3.9e-10 39.5 59.3 9 10 0.0077 4.1 7.5 0.1 2 24 453 475 453 478 0.91 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF324-203 - 553 3.9e-10 39.5 59.3 10 10 0.013 6.7 6.8 0.3 2 20 481 499 481 505 0.78 C2H2-type zinc finger # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF324-203.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF324-203.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF324-203.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF324-203.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF324-203.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:04:04 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZNF324-204 - 330 1.3e-69 227.7 51.7 1 10 3.1e-05 0.013 16.0 0.1 8 25 27 44 25 45 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF324-204 - 330 1.3e-69 227.7 51.7 2 10 2.2e-11 8.7e-09 35.4 0.2 2 25 49 72 48 73 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF324-204 - 330 1.3e-69 227.7 51.7 3 10 4.9e-11 2e-08 34.3 1.2 1 26 76 101 76 101 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF324-204 - 330 1.3e-69 227.7 51.7 4 10 3.7e-10 1.5e-07 31.5 0.8 1 26 104 129 104 129 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF324-204 - 330 1.3e-69 227.7 51.7 5 10 7.9e-06 0.0031 17.9 0.1 1 24 132 155 132 155 0.97 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF324-204 - 330 1.3e-69 227.7 51.7 6 10 1.8e-09 7.3e-07 29.3 0.1 1 25 160 184 160 185 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF324-204 - 330 1.3e-69 227.7 51.7 7 10 4.2e-11 1.7e-08 34.5 1.3 2 26 189 213 188 213 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF324-204 - 330 1.3e-69 227.7 51.7 8 10 5.3e-09 2.1e-06 27.9 0.1 1 25 216 240 216 241 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF324-204 - 330 1.3e-69 227.7 51.7 9 10 8.2e-09 3.2e-06 27.3 0.2 4 24 247 267 245 268 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF324-204 - 330 1.3e-69 227.7 51.7 10 10 0.025 10 6.8 0.5 3 13 274 284 272 287 0.82 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZNF324-204 - 330 1.5e-49 163.8 60.5 1 9 3.2e-07 0.00013 22.2 0.9 1 23 34 56 34 56 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF324-204 - 330 1.5e-49 163.8 60.5 2 9 1.3e-08 5e-06 26.7 1.2 1 23 62 84 62 84 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF324-204 - 330 1.5e-49 163.8 60.5 3 9 1.8e-09 7.3e-07 29.3 0.8 1 23 90 112 90 112 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF324-204 - 330 1.5e-49 163.8 60.5 4 9 4.2e-07 0.00017 21.9 1.7 1 23 118 140 118 140 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF324-204 - 330 1.5e-49 163.8 60.5 5 9 6.7e-07 0.00027 21.2 3.9 1 23 146 168 146 168 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF324-204 - 330 1.5e-49 163.8 60.5 6 9 2.8e-06 0.0011 19.3 0.1 1 23 174 196 174 196 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF324-204 - 330 1.5e-49 163.8 60.5 7 9 2.7e-08 1.1e-05 25.6 0.9 1 23 202 224 202 224 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF324-204 - 330 1.5e-49 163.8 60.5 8 9 3.3e-05 0.013 15.9 0.1 1 23 230 252 230 252 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF324-204 - 330 1.5e-49 163.8 60.5 9 9 2.4e-06 0.00096 19.5 1.1 1 23 258 280 258 280 0.98 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZNF324-204 - 330 3e-30 102.3 61.7 1 9 3.1e-06 0.0012 19.5 1.1 1 23 34 56 34 57 0.97 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF324-204 - 330 3e-30 102.3 61.7 2 9 4.9e-05 0.02 15.7 1.2 1 23 62 84 62 85 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF324-204 - 330 3e-30 102.3 61.7 3 9 9.4e-06 0.0037 18.0 0.9 1 23 90 112 90 113 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF324-204 - 330 3e-30 102.3 61.7 4 9 5.5e-05 0.022 15.6 1.1 1 23 118 140 118 141 0.90 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF324-204 - 330 3e-30 102.3 61.7 5 9 2e-05 0.0079 16.9 3.0 1 23 146 168 146 169 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF324-204 - 330 3e-30 102.3 61.7 6 9 0.00027 0.11 13.4 0.3 1 23 174 196 174 197 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF324-204 - 330 3e-30 102.3 61.7 7 9 2.7e-05 0.011 16.5 1.0 1 23 202 224 202 225 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF324-204 - 330 3e-30 102.3 61.7 8 9 0.0032 1.3 10.1 0.1 1 23 230 252 230 253 0.85 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF324-204 - 330 3e-30 102.3 61.7 9 9 2.7e-05 0.011 16.5 1.0 1 23 258 280 258 281 0.95 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF324-204 - 330 1.3e-12 47.4 58.3 1 9 9e-05 0.036 14.1 0.6 2 24 34 56 33 59 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF324-204 - 330 1.3e-12 47.4 58.3 2 9 0.016 6.5 6.9 2.3 2 12 62 72 62 85 0.80 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF324-204 - 330 1.3e-12 47.4 58.3 3 9 0.0059 2.3 8.3 0.2 2 12 90 100 90 114 0.82 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF324-204 - 330 1.3e-12 47.4 58.3 4 9 1.5e-05 0.0061 16.5 2.1 2 24 118 140 117 142 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF324-204 - 330 1.3e-12 47.4 58.3 5 9 0.38 1.5e+02 2.5 3.1 2 24 146 168 146 170 0.78 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF324-204 - 330 1.3e-12 47.4 58.3 6 9 0.00049 0.2 11.7 0.5 2 24 174 196 174 199 0.92 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF324-204 - 330 1.3e-12 47.4 58.3 7 9 0.046 18 5.4 0.5 2 18 202 218 202 221 0.76 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF324-204 - 330 1.3e-12 47.4 58.3 8 9 0.0054 2.2 8.4 0.1 2 24 230 252 230 255 0.91 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF324-204 - 330 1.3e-12 47.4 58.3 9 9 0.0091 3.6 7.7 0.3 2 20 258 276 258 282 0.78 C2H2-type zinc finger zf-C2H2_jaz PF12171.8 27 ZNF324-204 - 330 2.5e-12 46.7 24.6 1 9 1.8e-05 0.0072 16.6 0.4 2 24 34 56 33 56 0.95 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF324-204 - 330 2.5e-12 46.7 24.6 2 9 0.23 92 3.5 0.2 2 21 62 81 61 82 0.88 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF324-204 - 330 2.5e-12 46.7 24.6 3 9 0.0011 0.44 10.9 0.0 2 22 90 110 89 110 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF324-204 - 330 2.5e-12 46.7 24.6 4 9 0.0086 3.4 8.1 0.1 2 22 118 138 117 138 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF324-204 - 330 2.5e-12 46.7 24.6 5 9 0.64 2.5e+02 2.1 0.6 2 24 146 168 145 168 0.90 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF324-204 - 330 2.5e-12 46.7 24.6 6 9 4.5 1.8e+03 -0.6 0.1 2 11 174 183 173 193 0.83 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF324-204 - 330 2.5e-12 46.7 24.6 7 9 0.0047 1.9 8.9 0.0 2 21 202 221 201 222 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF324-204 - 330 2.5e-12 46.7 24.6 8 9 0.016 6.5 7.2 0.0 2 21 230 249 229 250 0.91 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF324-204 - 330 2.5e-12 46.7 24.6 9 9 4.6 1.8e+03 -0.6 0.1 2 11 258 267 257 269 0.85 Zinc-finger double-stranded RNA-binding Zn-ribbon_8 PF09723.10 40 ZNF324-204 - 330 1.9e-11 43.9 34.0 1 7 0.16 64 3.8 0.1 6 16 34 44 33 51 0.86 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF324-204 - 330 1.9e-11 43.9 34.0 2 7 2.2e-06 0.00089 19.3 2.3 6 36 62 99 61 101 0.89 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF324-204 - 330 1.9e-11 43.9 34.0 3 7 0.0019 0.77 9.9 4.9 6 35 118 154 117 158 0.83 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF324-204 - 330 1.9e-11 43.9 34.0 4 7 0.057 23 5.2 1.0 6 15 146 155 145 166 0.87 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF324-204 - 330 1.9e-11 43.9 34.0 5 7 0.00011 0.042 14.0 1.2 6 34 174 209 173 212 0.90 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF324-204 - 330 1.9e-11 43.9 34.0 6 7 0.00034 0.13 12.4 0.7 6 37 230 268 229 271 0.85 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF324-204 - 330 1.9e-11 43.9 34.0 7 7 0.053 21 5.3 0.3 6 17 258 269 255 283 0.83 Zinc ribbon domain zf_UBZ PF18439.1 32 ZNF324-204 - 330 5.3e-08 32.3 28.7 1 9 0.27 1.1e+02 2.6 0.0 2 20 33 52 32 53 0.85 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF324-204 - 330 5.3e-08 32.3 28.7 2 9 0.0015 0.59 9.8 0.3 3 21 62 81 60 81 0.89 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF324-204 - 330 5.3e-08 32.3 28.7 3 9 0.089 35 4.1 0.1 3 15 90 102 88 109 0.78 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF324-204 - 330 5.3e-08 32.3 28.7 4 9 0.0026 1 9.0 0.1 2 20 117 136 116 137 0.78 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF324-204 - 330 5.3e-08 32.3 28.7 5 9 0.087 34 4.1 0.6 3 12 146 155 144 165 0.81 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF324-204 - 330 5.3e-08 32.3 28.7 6 9 0.66 2.6e+02 1.3 0.0 3 14 174 185 172 192 0.86 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF324-204 - 330 5.3e-08 32.3 28.7 7 9 0.0015 0.59 9.8 0.2 3 21 202 221 200 221 0.91 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF324-204 - 330 5.3e-08 32.3 28.7 8 9 0.38 1.5e+02 2.1 0.0 3 14 230 241 229 249 0.79 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF324-204 - 330 5.3e-08 32.3 28.7 9 9 0.1 40 3.9 0.1 3 12 258 267 256 276 0.85 Ubiquitin-Binding Zinc Finger # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF324-204.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF324-204.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF324-204.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF324-204.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF324-204.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:04:04 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZNF329-201 - 541 2.8e-91 296.2 92.9 1 14 4.1 3e+03 -1.0 0.1 19 26 124 131 123 131 0.87 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF329-201 - 541 2.8e-91 296.2 92.9 2 14 0.00037 0.27 11.7 1.8 10 26 198 214 195 214 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF329-201 - 541 2.8e-91 296.2 92.9 3 14 3.9e-10 2.8e-07 30.6 2.1 2 25 218 241 217 242 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF329-201 - 541 2.8e-91 296.2 92.9 4 14 7e-12 5e-09 36.2 0.1 1 25 245 269 245 270 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF329-201 - 541 2.8e-91 296.2 92.9 5 14 8.2e-12 5.9e-09 36.0 0.3 1 25 273 297 273 298 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF329-201 - 541 2.8e-91 296.2 92.9 6 14 8.6e-09 6.2e-06 26.4 0.6 2 24 302 324 301 325 0.88 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF329-201 - 541 2.8e-91 296.2 92.9 7 14 7.5e-12 5.4e-09 36.1 1.4 1 24 329 352 329 353 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF329-201 - 541 2.8e-91 296.2 92.9 8 14 2.4e-11 1.7e-08 34.5 0.9 2 25 358 381 357 382 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF329-201 - 541 2.8e-91 296.2 92.9 9 14 1e-09 7.3e-07 29.3 1.1 2 24 386 408 385 409 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF329-201 - 541 2.8e-91 296.2 92.9 10 14 3.1e-08 2.2e-05 24.7 0.4 2 25 414 437 413 438 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF329-201 - 541 2.8e-91 296.2 92.9 11 14 7.3e-12 5.2e-09 36.1 0.3 2 24 442 464 441 465 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF329-201 - 541 2.8e-91 296.2 92.9 12 14 3.7e-12 2.7e-09 37.1 2.0 2 26 470 494 470 494 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF329-201 - 541 2.8e-91 296.2 92.9 13 14 8.7e-05 0.063 13.7 0.7 1 24 497 520 497 522 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF329-201 - 541 2.8e-91 296.2 92.9 14 14 0.13 90 3.8 0.1 1 14 525 538 525 540 0.90 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZNF329-201 - 541 6.4e-77 249.9 87.2 1 13 3.1 2.2e+03 -0.6 0.0 6 13 125 132 124 136 0.86 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF329-201 - 541 6.4e-77 249.9 87.2 2 13 3.3e-08 2.4e-05 24.5 6.4 1 23 203 225 203 225 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF329-201 - 541 6.4e-77 249.9 87.2 3 13 4.2e-10 3e-07 30.5 0.7 1 23 231 253 231 253 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF329-201 - 541 6.4e-77 249.9 87.2 4 13 7.4e-08 5.3e-05 23.4 0.2 1 23 259 281 259 281 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF329-201 - 541 6.4e-77 249.9 87.2 5 13 5.3e-09 3.8e-06 27.0 0.6 1 23 287 309 287 309 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF329-201 - 541 6.4e-77 249.9 87.2 6 13 1.9e-09 1.4e-06 28.5 0.9 1 23 315 337 315 337 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF329-201 - 541 6.4e-77 249.9 87.2 7 13 2.5e-07 0.00018 21.8 0.7 1 23 343 365 343 365 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF329-201 - 541 6.4e-77 249.9 87.2 8 13 2.8e-09 2e-06 27.9 0.7 1 23 371 393 371 393 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF329-201 - 541 6.4e-77 249.9 87.2 9 13 6.7e-08 4.8e-05 23.6 0.2 1 23 399 421 399 421 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF329-201 - 541 6.4e-77 249.9 87.2 10 13 3.5e-05 0.025 15.0 0.4 3 23 429 449 427 449 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF329-201 - 541 6.4e-77 249.9 87.2 11 13 1.3e-08 9.5e-06 25.8 2.4 1 23 455 477 455 477 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF329-201 - 541 6.4e-77 249.9 87.2 12 13 1.1e-10 7.5e-08 32.4 1.3 1 23 483 505 483 505 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF329-201 - 541 6.4e-77 249.9 87.2 13 13 1.8e-07 0.00013 22.2 1.1 2 23 512 533 511 533 0.97 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZNF329-201 - 541 3.7e-42 139.3 83.7 1 12 0.00036 0.26 12.2 5.1 1 23 203 225 203 226 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF329-201 - 541 3.7e-42 139.3 83.7 2 12 1.5e-05 0.011 16.5 0.4 1 23 231 253 231 254 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF329-201 - 541 3.7e-42 139.3 83.7 3 12 1.8e-05 0.013 16.3 0.2 1 23 259 281 259 282 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF329-201 - 541 3.7e-42 139.3 83.7 4 12 3.2e-05 0.023 15.5 0.5 1 23 287 309 287 310 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF329-201 - 541 3.7e-42 139.3 83.7 5 12 6e-06 0.0043 17.8 0.5 1 23 315 337 315 338 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF329-201 - 541 3.7e-42 139.3 83.7 6 12 3.1e-05 0.022 15.6 0.5 1 23 343 365 343 366 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF329-201 - 541 3.7e-42 139.3 83.7 7 12 2.5e-05 0.018 15.9 0.8 1 23 371 393 371 394 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF329-201 - 541 3.7e-42 139.3 83.7 8 12 3e-05 0.022 15.6 0.2 1 23 399 421 399 422 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF329-201 - 541 3.7e-42 139.3 83.7 9 12 6.5e-05 0.046 14.6 0.2 2 23 428 449 427 450 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF329-201 - 541 3.7e-42 139.3 83.7 10 12 2.6e-05 0.018 15.8 1.9 1 23 455 477 455 478 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF329-201 - 541 3.7e-42 139.3 83.7 11 12 2.9e-06 0.0021 18.7 1.5 1 23 483 505 483 506 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF329-201 - 541 3.7e-42 139.3 83.7 12 12 3.9e-06 0.0028 18.3 0.9 2 23 512 533 511 534 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF329-201 - 541 3.7e-21 74.6 85.8 1 12 0.012 8.8 6.5 4.3 2 24 203 225 202 228 0.88 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF329-201 - 541 3.7e-21 74.6 85.8 2 12 9.8e-06 0.007 16.3 0.4 2 24 231 253 231 256 0.89 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF329-201 - 541 3.7e-21 74.6 85.8 3 12 3e-05 0.021 14.8 0.6 2 24 259 281 259 284 0.91 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF329-201 - 541 3.7e-21 74.6 85.8 4 12 6e-05 0.043 13.8 0.5 2 24 287 309 287 312 0.95 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF329-201 - 541 3.7e-21 74.6 85.8 5 12 0.0055 3.9 7.6 0.2 2 21 315 334 315 339 0.77 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF329-201 - 541 3.7e-21 74.6 85.8 6 12 0.00033 0.24 11.5 1.2 2 24 343 365 343 368 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF329-201 - 541 3.7e-21 74.6 85.8 7 12 0.00044 0.31 11.1 0.6 2 13 371 382 371 395 0.82 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF329-201 - 541 3.7e-21 74.6 85.8 8 12 0.0012 0.82 9.7 1.7 2 11 399 408 399 408 0.97 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF329-201 - 541 3.7e-21 74.6 85.8 9 12 0.00051 0.36 10.9 0.2 2 24 427 449 427 452 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF329-201 - 541 3.7e-21 74.6 85.8 10 12 0.0037 2.7 8.1 1.4 2 12 455 465 455 479 0.89 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF329-201 - 541 3.7e-21 74.6 85.8 11 12 0.0014 1 9.4 0.8 2 12 483 493 483 494 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF329-201 - 541 3.7e-21 74.6 85.8 12 12 0.0022 1.6 8.9 0.8 3 25 512 534 512 536 0.92 C2H2-type zinc finger Zn-ribbon_8 PF09723.10 40 ZNF329-201 - 541 1.3e-16 60.4 63.6 1 11 9.6 6.9e+03 -2.7 0.0 10 17 124 131 123 139 0.74 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF329-201 - 541 1.3e-16 60.4 63.6 2 11 0.00017 0.13 12.5 6.6 5 38 202 242 202 244 0.85 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF329-201 - 541 1.3e-16 60.4 63.6 3 11 1.5e-05 0.011 15.9 2.6 6 34 231 266 230 270 0.93 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF329-201 - 541 1.3e-16 60.4 63.6 4 11 9.8e-05 0.071 13.2 4.1 6 38 259 298 257 299 0.92 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF329-201 - 541 1.3e-16 60.4 63.6 5 11 0.0049 3.5 7.8 0.3 6 18 287 299 286 310 0.83 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF329-201 - 541 1.3e-16 60.4 63.6 6 11 6e-06 0.0043 17.1 1.7 6 36 315 352 314 354 0.85 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF329-201 - 541 1.3e-16 60.4 63.6 7 11 1.2e-05 0.0087 16.2 3.5 6 34 371 406 370 409 0.93 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF329-201 - 541 1.3e-16 60.4 63.6 8 11 9.3e-05 0.067 13.3 2.8 6 34 399 434 398 440 0.91 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF329-201 - 541 1.3e-16 60.4 63.6 9 11 0.0018 1.3 9.2 2.7 6 36 427 464 426 466 0.86 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF329-201 - 541 1.3e-16 60.4 63.6 10 11 5.5e-06 0.004 17.2 6.3 6 35 455 491 453 495 0.89 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF329-201 - 541 1.3e-16 60.4 63.6 11 11 3.5e-06 0.0025 17.9 3.7 6 37 483 521 482 523 0.84 Zinc ribbon domain zf-C2H2_jaz PF12171.8 27 ZNF329-201 - 541 4.1e-16 58.8 53.4 1 13 4.3 3.1e+03 -1.4 0.0 6 14 124 132 123 134 0.83 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF329-201 - 541 4.1e-16 58.8 53.4 2 13 0.032 23 5.4 2.1 1 20 202 221 202 225 0.91 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF329-201 - 541 4.1e-16 58.8 53.4 3 13 0.0054 3.9 7.9 0.3 2 22 231 251 230 251 0.91 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF329-201 - 541 4.1e-16 58.8 53.4 4 13 0.025 18 5.7 0.0 2 22 259 279 258 279 0.91 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF329-201 - 541 4.1e-16 58.8 53.4 5 13 4.3e-05 0.031 14.6 0.1 2 24 287 309 286 309 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF329-201 - 541 4.1e-16 58.8 53.4 6 13 0.034 24 5.4 0.0 2 22 315 335 314 335 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF329-201 - 541 4.1e-16 58.8 53.4 7 13 0.049 35 4.8 0.1 2 24 343 365 342 365 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF329-201 - 541 4.1e-16 58.8 53.4 8 13 0.0012 0.9 9.9 0.2 2 22 371 391 370 391 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF329-201 - 541 4.1e-16 58.8 53.4 9 13 0.00039 0.28 11.5 0.1 2 22 399 419 398 419 0.91 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF329-201 - 541 4.1e-16 58.8 53.4 10 13 0.1 75 3.8 0.1 4 24 429 449 427 449 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF329-201 - 541 4.1e-16 58.8 53.4 11 13 0.19 1.4e+02 2.9 0.6 2 21 455 474 454 475 0.89 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF329-201 - 541 4.1e-16 58.8 53.4 12 13 0.03 22 5.5 0.2 4 21 485 502 482 503 0.84 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF329-201 - 541 4.1e-16 58.8 53.4 13 13 0.00032 0.23 11.8 0.0 3 22 512 531 510 531 0.92 Zinc-finger double-stranded RNA-binding XPA_N PF01286.18 32 ZNF329-201 - 541 2e-10 40.5 54.5 1 13 3.6 2.6e+03 -1.4 0.0 6 14 124 132 123 133 0.83 XPA protein N-terminal XPA_N PF01286.18 32 ZNF329-201 - 541 2e-10 40.5 54.5 2 13 0.19 1.4e+02 2.7 0.8 3 12 204 213 202 218 0.87 XPA protein N-terminal XPA_N PF01286.18 32 ZNF329-201 - 541 2e-10 40.5 54.5 3 13 0.014 10 6.3 0.2 3 13 232 242 230 245 0.86 XPA protein N-terminal XPA_N PF01286.18 32 ZNF329-201 - 541 2e-10 40.5 54.5 4 13 0.015 11 6.2 0.1 3 13 260 270 258 277 0.88 XPA protein N-terminal XPA_N PF01286.18 32 ZNF329-201 - 541 2e-10 40.5 54.5 5 13 0.0081 5.8 7.0 0.1 3 12 288 297 286 302 0.89 XPA protein N-terminal XPA_N PF01286.18 32 ZNF329-201 - 541 2e-10 40.5 54.5 6 13 0.0028 2 8.5 0.1 3 13 316 326 314 330 0.91 XPA protein N-terminal XPA_N PF01286.18 32 ZNF329-201 - 541 2e-10 40.5 54.5 7 13 0.0025 1.8 8.7 0.1 3 18 344 360 342 361 0.81 XPA protein N-terminal XPA_N PF01286.18 32 ZNF329-201 - 541 2e-10 40.5 54.5 8 13 0.042 30 4.8 0.2 3 12 372 381 370 386 0.89 XPA protein N-terminal XPA_N PF01286.18 32 ZNF329-201 - 541 2e-10 40.5 54.5 9 13 0.00041 0.3 11.2 0.1 3 17 400 414 398 417 0.87 XPA protein N-terminal XPA_N PF01286.18 32 ZNF329-201 - 541 2e-10 40.5 54.5 10 13 1 7.2e+02 0.4 0.1 4 11 429 436 427 438 0.87 XPA protein N-terminal XPA_N PF01286.18 32 ZNF329-201 - 541 2e-10 40.5 54.5 11 13 0.0042 3 8.0 0.8 3 14 456 467 454 473 0.88 XPA protein N-terminal XPA_N PF01286.18 32 ZNF329-201 - 541 2e-10 40.5 54.5 12 13 0.064 46 4.2 0.2 3 12 484 493 482 498 0.87 XPA protein N-terminal XPA_N PF01286.18 32 ZNF329-201 - 541 2e-10 40.5 54.5 13 13 0.044 32 4.7 0.3 3 14 512 523 510 526 0.90 XPA protein N-terminal zf_UBZ PF18439.1 32 ZNF329-201 - 541 2.4e-10 39.8 51.8 1 12 0.016 12 5.6 1.0 2 13 202 213 201 218 0.85 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF329-201 - 541 2.4e-10 39.8 51.8 2 12 0.0026 1.8 8.2 0.1 3 15 231 243 229 250 0.83 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF329-201 - 541 2.4e-10 39.8 51.8 3 12 0.00089 0.63 9.7 0.1 3 21 259 278 257 278 0.90 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF329-201 - 541 2.4e-10 39.8 51.8 4 12 0.042 30 4.3 0.1 3 13 287 297 285 305 0.86 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF329-201 - 541 2.4e-10 39.8 51.8 5 12 0.043 31 4.3 0.1 3 13 315 325 313 330 0.86 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF329-201 - 541 2.4e-10 39.8 51.8 6 12 0.013 9.7 5.9 0.1 3 14 343 354 341 362 0.78 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF329-201 - 541 2.4e-10 39.8 51.8 7 12 0.014 10 5.8 0.1 3 13 371 381 369 386 0.83 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF329-201 - 541 2.4e-10 39.8 51.8 8 12 0.005 3.6 7.3 0.1 3 15 399 411 397 417 0.87 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF329-201 - 541 2.4e-10 39.8 51.8 9 12 2.5 1.8e+03 -1.4 0.2 3 11 427 435 426 437 0.80 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF329-201 - 541 2.4e-10 39.8 51.8 10 12 0.093 67 3.2 0.7 3 15 455 467 453 474 0.80 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF329-201 - 541 2.4e-10 39.8 51.8 11 12 0.00065 0.46 10.1 0.2 3 15 483 495 481 502 0.82 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF329-201 - 541 2.4e-10 39.8 51.8 12 12 0.0075 5.4 6.7 0.2 5 16 513 525 511 530 0.79 Ubiquitin-Binding Zinc Finger DZR PF12773.7 49 ZNF329-201 - 541 3.5e-08 33.3 51.4 1 3 5.5 3.9e+03 -2.0 20.0 14 43 232 273 191 361 0.64 Double zinc ribbon DZR PF12773.7 49 ZNF329-201 - 541 3.5e-08 33.3 51.4 2 3 0.052 37 4.4 9.9 1 38 345 408 345 439 0.75 Double zinc ribbon DZR PF12773.7 49 ZNF329-201 - 541 3.5e-08 33.3 51.4 3 3 0.0015 1.1 9.4 15.1 1 40 457 522 417 526 0.92 Double zinc ribbon zinc_ribbon_15 PF17032.5 86 ZNF329-201 - 541 1.4e-07 32.1 43.6 1 6 0.0057 4.1 8.2 4.1 37 80 202 245 195 249 0.90 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF329-201 - 541 1.4e-07 32.1 43.6 2 6 0.00089 0.63 10.8 0.7 31 78 252 299 246 302 0.85 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF329-201 - 541 1.4e-07 32.1 43.6 3 6 0.0062 4.5 8.1 0.4 34 75 311 352 302 358 0.86 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF329-201 - 541 1.4e-07 32.1 43.6 4 6 0.012 8.7 7.2 4.6 38 78 343 383 334 413 0.61 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF329-201 - 541 1.4e-07 32.1 43.6 5 6 0.00063 0.45 11.3 0.9 26 76 415 465 409 470 0.86 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF329-201 - 541 1.4e-07 32.1 43.6 6 6 0.00074 0.53 11.1 1.8 30 78 475 523 467 526 0.81 zinc-ribbon family # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF329-201.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF329-201.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF329-201.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF329-201.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF329-201.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:04:05 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZNF329-202 - 541 2.8e-91 296.2 92.9 1 14 4.1 3e+03 -1.0 0.1 19 26 124 131 123 131 0.87 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF329-202 - 541 2.8e-91 296.2 92.9 2 14 0.00037 0.27 11.7 1.8 10 26 198 214 195 214 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF329-202 - 541 2.8e-91 296.2 92.9 3 14 3.9e-10 2.8e-07 30.6 2.1 2 25 218 241 217 242 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF329-202 - 541 2.8e-91 296.2 92.9 4 14 7e-12 5e-09 36.2 0.1 1 25 245 269 245 270 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF329-202 - 541 2.8e-91 296.2 92.9 5 14 8.2e-12 5.9e-09 36.0 0.3 1 25 273 297 273 298 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF329-202 - 541 2.8e-91 296.2 92.9 6 14 8.6e-09 6.2e-06 26.4 0.6 2 24 302 324 301 325 0.88 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF329-202 - 541 2.8e-91 296.2 92.9 7 14 7.5e-12 5.4e-09 36.1 1.4 1 24 329 352 329 353 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF329-202 - 541 2.8e-91 296.2 92.9 8 14 2.4e-11 1.7e-08 34.5 0.9 2 25 358 381 357 382 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF329-202 - 541 2.8e-91 296.2 92.9 9 14 1e-09 7.3e-07 29.3 1.1 2 24 386 408 385 409 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF329-202 - 541 2.8e-91 296.2 92.9 10 14 3.1e-08 2.2e-05 24.7 0.4 2 25 414 437 413 438 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF329-202 - 541 2.8e-91 296.2 92.9 11 14 7.3e-12 5.2e-09 36.1 0.3 2 24 442 464 441 465 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF329-202 - 541 2.8e-91 296.2 92.9 12 14 3.7e-12 2.7e-09 37.1 2.0 2 26 470 494 470 494 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF329-202 - 541 2.8e-91 296.2 92.9 13 14 8.7e-05 0.063 13.7 0.7 1 24 497 520 497 522 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF329-202 - 541 2.8e-91 296.2 92.9 14 14 0.13 90 3.8 0.1 1 14 525 538 525 540 0.90 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZNF329-202 - 541 6.4e-77 249.9 87.2 1 13 3.1 2.2e+03 -0.6 0.0 6 13 125 132 124 136 0.86 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF329-202 - 541 6.4e-77 249.9 87.2 2 13 3.3e-08 2.4e-05 24.5 6.4 1 23 203 225 203 225 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF329-202 - 541 6.4e-77 249.9 87.2 3 13 4.2e-10 3e-07 30.5 0.7 1 23 231 253 231 253 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF329-202 - 541 6.4e-77 249.9 87.2 4 13 7.4e-08 5.3e-05 23.4 0.2 1 23 259 281 259 281 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF329-202 - 541 6.4e-77 249.9 87.2 5 13 5.3e-09 3.8e-06 27.0 0.6 1 23 287 309 287 309 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF329-202 - 541 6.4e-77 249.9 87.2 6 13 1.9e-09 1.4e-06 28.5 0.9 1 23 315 337 315 337 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF329-202 - 541 6.4e-77 249.9 87.2 7 13 2.5e-07 0.00018 21.8 0.7 1 23 343 365 343 365 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF329-202 - 541 6.4e-77 249.9 87.2 8 13 2.8e-09 2e-06 27.9 0.7 1 23 371 393 371 393 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF329-202 - 541 6.4e-77 249.9 87.2 9 13 6.7e-08 4.8e-05 23.6 0.2 1 23 399 421 399 421 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF329-202 - 541 6.4e-77 249.9 87.2 10 13 3.5e-05 0.025 15.0 0.4 3 23 429 449 427 449 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF329-202 - 541 6.4e-77 249.9 87.2 11 13 1.3e-08 9.5e-06 25.8 2.4 1 23 455 477 455 477 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF329-202 - 541 6.4e-77 249.9 87.2 12 13 1.1e-10 7.5e-08 32.4 1.3 1 23 483 505 483 505 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF329-202 - 541 6.4e-77 249.9 87.2 13 13 1.8e-07 0.00013 22.2 1.1 2 23 512 533 511 533 0.97 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZNF329-202 - 541 3.7e-42 139.3 83.7 1 12 0.00036 0.26 12.2 5.1 1 23 203 225 203 226 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF329-202 - 541 3.7e-42 139.3 83.7 2 12 1.5e-05 0.011 16.5 0.4 1 23 231 253 231 254 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF329-202 - 541 3.7e-42 139.3 83.7 3 12 1.8e-05 0.013 16.3 0.2 1 23 259 281 259 282 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF329-202 - 541 3.7e-42 139.3 83.7 4 12 3.2e-05 0.023 15.5 0.5 1 23 287 309 287 310 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF329-202 - 541 3.7e-42 139.3 83.7 5 12 6e-06 0.0043 17.8 0.5 1 23 315 337 315 338 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF329-202 - 541 3.7e-42 139.3 83.7 6 12 3.1e-05 0.022 15.6 0.5 1 23 343 365 343 366 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF329-202 - 541 3.7e-42 139.3 83.7 7 12 2.5e-05 0.018 15.9 0.8 1 23 371 393 371 394 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF329-202 - 541 3.7e-42 139.3 83.7 8 12 3e-05 0.022 15.6 0.2 1 23 399 421 399 422 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF329-202 - 541 3.7e-42 139.3 83.7 9 12 6.5e-05 0.046 14.6 0.2 2 23 428 449 427 450 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF329-202 - 541 3.7e-42 139.3 83.7 10 12 2.6e-05 0.018 15.8 1.9 1 23 455 477 455 478 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF329-202 - 541 3.7e-42 139.3 83.7 11 12 2.9e-06 0.0021 18.7 1.5 1 23 483 505 483 506 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF329-202 - 541 3.7e-42 139.3 83.7 12 12 3.9e-06 0.0028 18.3 0.9 2 23 512 533 511 534 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF329-202 - 541 3.7e-21 74.6 85.8 1 12 0.012 8.8 6.5 4.3 2 24 203 225 202 228 0.88 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF329-202 - 541 3.7e-21 74.6 85.8 2 12 9.8e-06 0.007 16.3 0.4 2 24 231 253 231 256 0.89 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF329-202 - 541 3.7e-21 74.6 85.8 3 12 3e-05 0.021 14.8 0.6 2 24 259 281 259 284 0.91 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF329-202 - 541 3.7e-21 74.6 85.8 4 12 6e-05 0.043 13.8 0.5 2 24 287 309 287 312 0.95 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF329-202 - 541 3.7e-21 74.6 85.8 5 12 0.0055 3.9 7.6 0.2 2 21 315 334 315 339 0.77 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF329-202 - 541 3.7e-21 74.6 85.8 6 12 0.00033 0.24 11.5 1.2 2 24 343 365 343 368 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF329-202 - 541 3.7e-21 74.6 85.8 7 12 0.00044 0.31 11.1 0.6 2 13 371 382 371 395 0.82 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF329-202 - 541 3.7e-21 74.6 85.8 8 12 0.0012 0.82 9.7 1.7 2 11 399 408 399 408 0.97 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF329-202 - 541 3.7e-21 74.6 85.8 9 12 0.00051 0.36 10.9 0.2 2 24 427 449 427 452 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF329-202 - 541 3.7e-21 74.6 85.8 10 12 0.0037 2.7 8.1 1.4 2 12 455 465 455 479 0.89 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF329-202 - 541 3.7e-21 74.6 85.8 11 12 0.0014 1 9.4 0.8 2 12 483 493 483 494 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF329-202 - 541 3.7e-21 74.6 85.8 12 12 0.0022 1.6 8.9 0.8 3 25 512 534 512 536 0.92 C2H2-type zinc finger Zn-ribbon_8 PF09723.10 40 ZNF329-202 - 541 1.3e-16 60.4 63.6 1 11 9.6 6.9e+03 -2.7 0.0 10 17 124 131 123 139 0.74 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF329-202 - 541 1.3e-16 60.4 63.6 2 11 0.00017 0.13 12.5 6.6 5 38 202 242 202 244 0.85 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF329-202 - 541 1.3e-16 60.4 63.6 3 11 1.5e-05 0.011 15.9 2.6 6 34 231 266 230 270 0.93 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF329-202 - 541 1.3e-16 60.4 63.6 4 11 9.8e-05 0.071 13.2 4.1 6 38 259 298 257 299 0.92 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF329-202 - 541 1.3e-16 60.4 63.6 5 11 0.0049 3.5 7.8 0.3 6 18 287 299 286 310 0.83 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF329-202 - 541 1.3e-16 60.4 63.6 6 11 6e-06 0.0043 17.1 1.7 6 36 315 352 314 354 0.85 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF329-202 - 541 1.3e-16 60.4 63.6 7 11 1.2e-05 0.0087 16.2 3.5 6 34 371 406 370 409 0.93 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF329-202 - 541 1.3e-16 60.4 63.6 8 11 9.3e-05 0.067 13.3 2.8 6 34 399 434 398 440 0.91 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF329-202 - 541 1.3e-16 60.4 63.6 9 11 0.0018 1.3 9.2 2.7 6 36 427 464 426 466 0.86 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF329-202 - 541 1.3e-16 60.4 63.6 10 11 5.5e-06 0.004 17.2 6.3 6 35 455 491 453 495 0.89 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF329-202 - 541 1.3e-16 60.4 63.6 11 11 3.5e-06 0.0025 17.9 3.7 6 37 483 521 482 523 0.84 Zinc ribbon domain zf-C2H2_jaz PF12171.8 27 ZNF329-202 - 541 4.1e-16 58.8 53.4 1 13 4.3 3.1e+03 -1.4 0.0 6 14 124 132 123 134 0.83 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF329-202 - 541 4.1e-16 58.8 53.4 2 13 0.032 23 5.4 2.1 1 20 202 221 202 225 0.91 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF329-202 - 541 4.1e-16 58.8 53.4 3 13 0.0054 3.9 7.9 0.3 2 22 231 251 230 251 0.91 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF329-202 - 541 4.1e-16 58.8 53.4 4 13 0.025 18 5.7 0.0 2 22 259 279 258 279 0.91 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF329-202 - 541 4.1e-16 58.8 53.4 5 13 4.3e-05 0.031 14.6 0.1 2 24 287 309 286 309 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF329-202 - 541 4.1e-16 58.8 53.4 6 13 0.034 24 5.4 0.0 2 22 315 335 314 335 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF329-202 - 541 4.1e-16 58.8 53.4 7 13 0.049 35 4.8 0.1 2 24 343 365 342 365 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF329-202 - 541 4.1e-16 58.8 53.4 8 13 0.0012 0.9 9.9 0.2 2 22 371 391 370 391 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF329-202 - 541 4.1e-16 58.8 53.4 9 13 0.00039 0.28 11.5 0.1 2 22 399 419 398 419 0.91 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF329-202 - 541 4.1e-16 58.8 53.4 10 13 0.1 75 3.8 0.1 4 24 429 449 427 449 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF329-202 - 541 4.1e-16 58.8 53.4 11 13 0.19 1.4e+02 2.9 0.6 2 21 455 474 454 475 0.89 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF329-202 - 541 4.1e-16 58.8 53.4 12 13 0.03 22 5.5 0.2 4 21 485 502 482 503 0.84 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF329-202 - 541 4.1e-16 58.8 53.4 13 13 0.00032 0.23 11.8 0.0 3 22 512 531 510 531 0.92 Zinc-finger double-stranded RNA-binding XPA_N PF01286.18 32 ZNF329-202 - 541 2e-10 40.5 54.5 1 13 3.6 2.6e+03 -1.4 0.0 6 14 124 132 123 133 0.83 XPA protein N-terminal XPA_N PF01286.18 32 ZNF329-202 - 541 2e-10 40.5 54.5 2 13 0.19 1.4e+02 2.7 0.8 3 12 204 213 202 218 0.87 XPA protein N-terminal XPA_N PF01286.18 32 ZNF329-202 - 541 2e-10 40.5 54.5 3 13 0.014 10 6.3 0.2 3 13 232 242 230 245 0.86 XPA protein N-terminal XPA_N PF01286.18 32 ZNF329-202 - 541 2e-10 40.5 54.5 4 13 0.015 11 6.2 0.1 3 13 260 270 258 277 0.88 XPA protein N-terminal XPA_N PF01286.18 32 ZNF329-202 - 541 2e-10 40.5 54.5 5 13 0.0081 5.8 7.0 0.1 3 12 288 297 286 302 0.89 XPA protein N-terminal XPA_N PF01286.18 32 ZNF329-202 - 541 2e-10 40.5 54.5 6 13 0.0028 2 8.5 0.1 3 13 316 326 314 330 0.91 XPA protein N-terminal XPA_N PF01286.18 32 ZNF329-202 - 541 2e-10 40.5 54.5 7 13 0.0025 1.8 8.7 0.1 3 18 344 360 342 361 0.81 XPA protein N-terminal XPA_N PF01286.18 32 ZNF329-202 - 541 2e-10 40.5 54.5 8 13 0.042 30 4.8 0.2 3 12 372 381 370 386 0.89 XPA protein N-terminal XPA_N PF01286.18 32 ZNF329-202 - 541 2e-10 40.5 54.5 9 13 0.00041 0.3 11.2 0.1 3 17 400 414 398 417 0.87 XPA protein N-terminal XPA_N PF01286.18 32 ZNF329-202 - 541 2e-10 40.5 54.5 10 13 1 7.2e+02 0.4 0.1 4 11 429 436 427 438 0.87 XPA protein N-terminal XPA_N PF01286.18 32 ZNF329-202 - 541 2e-10 40.5 54.5 11 13 0.0042 3 8.0 0.8 3 14 456 467 454 473 0.88 XPA protein N-terminal XPA_N PF01286.18 32 ZNF329-202 - 541 2e-10 40.5 54.5 12 13 0.064 46 4.2 0.2 3 12 484 493 482 498 0.87 XPA protein N-terminal XPA_N PF01286.18 32 ZNF329-202 - 541 2e-10 40.5 54.5 13 13 0.044 32 4.7 0.3 3 14 512 523 510 526 0.90 XPA protein N-terminal zf_UBZ PF18439.1 32 ZNF329-202 - 541 2.4e-10 39.8 51.8 1 12 0.016 12 5.6 1.0 2 13 202 213 201 218 0.85 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF329-202 - 541 2.4e-10 39.8 51.8 2 12 0.0026 1.8 8.2 0.1 3 15 231 243 229 250 0.83 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF329-202 - 541 2.4e-10 39.8 51.8 3 12 0.00089 0.63 9.7 0.1 3 21 259 278 257 278 0.90 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF329-202 - 541 2.4e-10 39.8 51.8 4 12 0.042 30 4.3 0.1 3 13 287 297 285 305 0.86 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF329-202 - 541 2.4e-10 39.8 51.8 5 12 0.043 31 4.3 0.1 3 13 315 325 313 330 0.86 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF329-202 - 541 2.4e-10 39.8 51.8 6 12 0.013 9.7 5.9 0.1 3 14 343 354 341 362 0.78 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF329-202 - 541 2.4e-10 39.8 51.8 7 12 0.014 10 5.8 0.1 3 13 371 381 369 386 0.83 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF329-202 - 541 2.4e-10 39.8 51.8 8 12 0.005 3.6 7.3 0.1 3 15 399 411 397 417 0.87 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF329-202 - 541 2.4e-10 39.8 51.8 9 12 2.5 1.8e+03 -1.4 0.2 3 11 427 435 426 437 0.80 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF329-202 - 541 2.4e-10 39.8 51.8 10 12 0.093 67 3.2 0.7 3 15 455 467 453 474 0.80 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF329-202 - 541 2.4e-10 39.8 51.8 11 12 0.00065 0.46 10.1 0.2 3 15 483 495 481 502 0.82 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF329-202 - 541 2.4e-10 39.8 51.8 12 12 0.0075 5.4 6.7 0.2 5 16 513 525 511 530 0.79 Ubiquitin-Binding Zinc Finger DZR PF12773.7 49 ZNF329-202 - 541 3.5e-08 33.3 51.4 1 3 5.5 3.9e+03 -2.0 20.0 14 43 232 273 191 361 0.64 Double zinc ribbon DZR PF12773.7 49 ZNF329-202 - 541 3.5e-08 33.3 51.4 2 3 0.052 37 4.4 9.9 1 38 345 408 345 439 0.75 Double zinc ribbon DZR PF12773.7 49 ZNF329-202 - 541 3.5e-08 33.3 51.4 3 3 0.0015 1.1 9.4 15.1 1 40 457 522 417 526 0.92 Double zinc ribbon zinc_ribbon_15 PF17032.5 86 ZNF329-202 - 541 1.4e-07 32.1 43.6 1 6 0.0057 4.1 8.2 4.1 37 80 202 245 195 249 0.90 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF329-202 - 541 1.4e-07 32.1 43.6 2 6 0.00089 0.63 10.8 0.7 31 78 252 299 246 302 0.85 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF329-202 - 541 1.4e-07 32.1 43.6 3 6 0.0062 4.5 8.1 0.4 34 75 311 352 302 358 0.86 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF329-202 - 541 1.4e-07 32.1 43.6 4 6 0.012 8.7 7.2 4.6 38 78 343 383 334 413 0.61 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF329-202 - 541 1.4e-07 32.1 43.6 5 6 0.00063 0.45 11.3 0.9 26 76 415 465 409 470 0.86 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF329-202 - 541 1.4e-07 32.1 43.6 6 6 0.00074 0.53 11.1 1.8 30 78 475 523 467 526 0.81 zinc-ribbon family # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF329-202.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF329-202.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF329-202.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF329-202.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF329-202.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:04:05 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZNF329-203 - 541 2.8e-91 296.2 92.9 1 14 4.1 3e+03 -1.0 0.1 19 26 124 131 123 131 0.87 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF329-203 - 541 2.8e-91 296.2 92.9 2 14 0.00037 0.27 11.7 1.8 10 26 198 214 195 214 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF329-203 - 541 2.8e-91 296.2 92.9 3 14 3.9e-10 2.8e-07 30.6 2.1 2 25 218 241 217 242 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF329-203 - 541 2.8e-91 296.2 92.9 4 14 7e-12 5e-09 36.2 0.1 1 25 245 269 245 270 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF329-203 - 541 2.8e-91 296.2 92.9 5 14 8.2e-12 5.9e-09 36.0 0.3 1 25 273 297 273 298 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF329-203 - 541 2.8e-91 296.2 92.9 6 14 8.6e-09 6.2e-06 26.4 0.6 2 24 302 324 301 325 0.88 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF329-203 - 541 2.8e-91 296.2 92.9 7 14 7.5e-12 5.4e-09 36.1 1.4 1 24 329 352 329 353 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF329-203 - 541 2.8e-91 296.2 92.9 8 14 2.4e-11 1.7e-08 34.5 0.9 2 25 358 381 357 382 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF329-203 - 541 2.8e-91 296.2 92.9 9 14 1e-09 7.3e-07 29.3 1.1 2 24 386 408 385 409 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF329-203 - 541 2.8e-91 296.2 92.9 10 14 3.1e-08 2.2e-05 24.7 0.4 2 25 414 437 413 438 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF329-203 - 541 2.8e-91 296.2 92.9 11 14 7.3e-12 5.2e-09 36.1 0.3 2 24 442 464 441 465 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF329-203 - 541 2.8e-91 296.2 92.9 12 14 3.7e-12 2.7e-09 37.1 2.0 2 26 470 494 470 494 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF329-203 - 541 2.8e-91 296.2 92.9 13 14 8.7e-05 0.063 13.7 0.7 1 24 497 520 497 522 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF329-203 - 541 2.8e-91 296.2 92.9 14 14 0.13 90 3.8 0.1 1 14 525 538 525 540 0.90 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZNF329-203 - 541 6.4e-77 249.9 87.2 1 13 3.1 2.2e+03 -0.6 0.0 6 13 125 132 124 136 0.86 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF329-203 - 541 6.4e-77 249.9 87.2 2 13 3.3e-08 2.4e-05 24.5 6.4 1 23 203 225 203 225 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF329-203 - 541 6.4e-77 249.9 87.2 3 13 4.2e-10 3e-07 30.5 0.7 1 23 231 253 231 253 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF329-203 - 541 6.4e-77 249.9 87.2 4 13 7.4e-08 5.3e-05 23.4 0.2 1 23 259 281 259 281 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF329-203 - 541 6.4e-77 249.9 87.2 5 13 5.3e-09 3.8e-06 27.0 0.6 1 23 287 309 287 309 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF329-203 - 541 6.4e-77 249.9 87.2 6 13 1.9e-09 1.4e-06 28.5 0.9 1 23 315 337 315 337 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF329-203 - 541 6.4e-77 249.9 87.2 7 13 2.5e-07 0.00018 21.8 0.7 1 23 343 365 343 365 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF329-203 - 541 6.4e-77 249.9 87.2 8 13 2.8e-09 2e-06 27.9 0.7 1 23 371 393 371 393 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF329-203 - 541 6.4e-77 249.9 87.2 9 13 6.7e-08 4.8e-05 23.6 0.2 1 23 399 421 399 421 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF329-203 - 541 6.4e-77 249.9 87.2 10 13 3.5e-05 0.025 15.0 0.4 3 23 429 449 427 449 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF329-203 - 541 6.4e-77 249.9 87.2 11 13 1.3e-08 9.5e-06 25.8 2.4 1 23 455 477 455 477 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF329-203 - 541 6.4e-77 249.9 87.2 12 13 1.1e-10 7.5e-08 32.4 1.3 1 23 483 505 483 505 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF329-203 - 541 6.4e-77 249.9 87.2 13 13 1.8e-07 0.00013 22.2 1.1 2 23 512 533 511 533 0.97 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZNF329-203 - 541 3.7e-42 139.3 83.7 1 12 0.00036 0.26 12.2 5.1 1 23 203 225 203 226 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF329-203 - 541 3.7e-42 139.3 83.7 2 12 1.5e-05 0.011 16.5 0.4 1 23 231 253 231 254 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF329-203 - 541 3.7e-42 139.3 83.7 3 12 1.8e-05 0.013 16.3 0.2 1 23 259 281 259 282 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF329-203 - 541 3.7e-42 139.3 83.7 4 12 3.2e-05 0.023 15.5 0.5 1 23 287 309 287 310 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF329-203 - 541 3.7e-42 139.3 83.7 5 12 6e-06 0.0043 17.8 0.5 1 23 315 337 315 338 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF329-203 - 541 3.7e-42 139.3 83.7 6 12 3.1e-05 0.022 15.6 0.5 1 23 343 365 343 366 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF329-203 - 541 3.7e-42 139.3 83.7 7 12 2.5e-05 0.018 15.9 0.8 1 23 371 393 371 394 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF329-203 - 541 3.7e-42 139.3 83.7 8 12 3e-05 0.022 15.6 0.2 1 23 399 421 399 422 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF329-203 - 541 3.7e-42 139.3 83.7 9 12 6.5e-05 0.046 14.6 0.2 2 23 428 449 427 450 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF329-203 - 541 3.7e-42 139.3 83.7 10 12 2.6e-05 0.018 15.8 1.9 1 23 455 477 455 478 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF329-203 - 541 3.7e-42 139.3 83.7 11 12 2.9e-06 0.0021 18.7 1.5 1 23 483 505 483 506 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF329-203 - 541 3.7e-42 139.3 83.7 12 12 3.9e-06 0.0028 18.3 0.9 2 23 512 533 511 534 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF329-203 - 541 3.7e-21 74.6 85.8 1 12 0.012 8.8 6.5 4.3 2 24 203 225 202 228 0.88 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF329-203 - 541 3.7e-21 74.6 85.8 2 12 9.8e-06 0.007 16.3 0.4 2 24 231 253 231 256 0.89 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF329-203 - 541 3.7e-21 74.6 85.8 3 12 3e-05 0.021 14.8 0.6 2 24 259 281 259 284 0.91 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF329-203 - 541 3.7e-21 74.6 85.8 4 12 6e-05 0.043 13.8 0.5 2 24 287 309 287 312 0.95 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF329-203 - 541 3.7e-21 74.6 85.8 5 12 0.0055 3.9 7.6 0.2 2 21 315 334 315 339 0.77 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF329-203 - 541 3.7e-21 74.6 85.8 6 12 0.00033 0.24 11.5 1.2 2 24 343 365 343 368 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF329-203 - 541 3.7e-21 74.6 85.8 7 12 0.00044 0.31 11.1 0.6 2 13 371 382 371 395 0.82 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF329-203 - 541 3.7e-21 74.6 85.8 8 12 0.0012 0.82 9.7 1.7 2 11 399 408 399 408 0.97 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF329-203 - 541 3.7e-21 74.6 85.8 9 12 0.00051 0.36 10.9 0.2 2 24 427 449 427 452 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF329-203 - 541 3.7e-21 74.6 85.8 10 12 0.0037 2.7 8.1 1.4 2 12 455 465 455 479 0.89 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF329-203 - 541 3.7e-21 74.6 85.8 11 12 0.0014 1 9.4 0.8 2 12 483 493 483 494 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF329-203 - 541 3.7e-21 74.6 85.8 12 12 0.0022 1.6 8.9 0.8 3 25 512 534 512 536 0.92 C2H2-type zinc finger Zn-ribbon_8 PF09723.10 40 ZNF329-203 - 541 1.3e-16 60.4 63.6 1 11 9.6 6.9e+03 -2.7 0.0 10 17 124 131 123 139 0.74 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF329-203 - 541 1.3e-16 60.4 63.6 2 11 0.00017 0.13 12.5 6.6 5 38 202 242 202 244 0.85 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF329-203 - 541 1.3e-16 60.4 63.6 3 11 1.5e-05 0.011 15.9 2.6 6 34 231 266 230 270 0.93 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF329-203 - 541 1.3e-16 60.4 63.6 4 11 9.8e-05 0.071 13.2 4.1 6 38 259 298 257 299 0.92 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF329-203 - 541 1.3e-16 60.4 63.6 5 11 0.0049 3.5 7.8 0.3 6 18 287 299 286 310 0.83 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF329-203 - 541 1.3e-16 60.4 63.6 6 11 6e-06 0.0043 17.1 1.7 6 36 315 352 314 354 0.85 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF329-203 - 541 1.3e-16 60.4 63.6 7 11 1.2e-05 0.0087 16.2 3.5 6 34 371 406 370 409 0.93 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF329-203 - 541 1.3e-16 60.4 63.6 8 11 9.3e-05 0.067 13.3 2.8 6 34 399 434 398 440 0.91 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF329-203 - 541 1.3e-16 60.4 63.6 9 11 0.0018 1.3 9.2 2.7 6 36 427 464 426 466 0.86 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF329-203 - 541 1.3e-16 60.4 63.6 10 11 5.5e-06 0.004 17.2 6.3 6 35 455 491 453 495 0.89 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF329-203 - 541 1.3e-16 60.4 63.6 11 11 3.5e-06 0.0025 17.9 3.7 6 37 483 521 482 523 0.84 Zinc ribbon domain zf-C2H2_jaz PF12171.8 27 ZNF329-203 - 541 4.1e-16 58.8 53.4 1 13 4.3 3.1e+03 -1.4 0.0 6 14 124 132 123 134 0.83 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF329-203 - 541 4.1e-16 58.8 53.4 2 13 0.032 23 5.4 2.1 1 20 202 221 202 225 0.91 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF329-203 - 541 4.1e-16 58.8 53.4 3 13 0.0054 3.9 7.9 0.3 2 22 231 251 230 251 0.91 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF329-203 - 541 4.1e-16 58.8 53.4 4 13 0.025 18 5.7 0.0 2 22 259 279 258 279 0.91 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF329-203 - 541 4.1e-16 58.8 53.4 5 13 4.3e-05 0.031 14.6 0.1 2 24 287 309 286 309 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF329-203 - 541 4.1e-16 58.8 53.4 6 13 0.034 24 5.4 0.0 2 22 315 335 314 335 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF329-203 - 541 4.1e-16 58.8 53.4 7 13 0.049 35 4.8 0.1 2 24 343 365 342 365 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF329-203 - 541 4.1e-16 58.8 53.4 8 13 0.0012 0.9 9.9 0.2 2 22 371 391 370 391 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF329-203 - 541 4.1e-16 58.8 53.4 9 13 0.00039 0.28 11.5 0.1 2 22 399 419 398 419 0.91 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF329-203 - 541 4.1e-16 58.8 53.4 10 13 0.1 75 3.8 0.1 4 24 429 449 427 449 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF329-203 - 541 4.1e-16 58.8 53.4 11 13 0.19 1.4e+02 2.9 0.6 2 21 455 474 454 475 0.89 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF329-203 - 541 4.1e-16 58.8 53.4 12 13 0.03 22 5.5 0.2 4 21 485 502 482 503 0.84 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF329-203 - 541 4.1e-16 58.8 53.4 13 13 0.00032 0.23 11.8 0.0 3 22 512 531 510 531 0.92 Zinc-finger double-stranded RNA-binding XPA_N PF01286.18 32 ZNF329-203 - 541 2e-10 40.5 54.5 1 13 3.6 2.6e+03 -1.4 0.0 6 14 124 132 123 133 0.83 XPA protein N-terminal XPA_N PF01286.18 32 ZNF329-203 - 541 2e-10 40.5 54.5 2 13 0.19 1.4e+02 2.7 0.8 3 12 204 213 202 218 0.87 XPA protein N-terminal XPA_N PF01286.18 32 ZNF329-203 - 541 2e-10 40.5 54.5 3 13 0.014 10 6.3 0.2 3 13 232 242 230 245 0.86 XPA protein N-terminal XPA_N PF01286.18 32 ZNF329-203 - 541 2e-10 40.5 54.5 4 13 0.015 11 6.2 0.1 3 13 260 270 258 277 0.88 XPA protein N-terminal XPA_N PF01286.18 32 ZNF329-203 - 541 2e-10 40.5 54.5 5 13 0.0081 5.8 7.0 0.1 3 12 288 297 286 302 0.89 XPA protein N-terminal XPA_N PF01286.18 32 ZNF329-203 - 541 2e-10 40.5 54.5 6 13 0.0028 2 8.5 0.1 3 13 316 326 314 330 0.91 XPA protein N-terminal XPA_N PF01286.18 32 ZNF329-203 - 541 2e-10 40.5 54.5 7 13 0.0025 1.8 8.7 0.1 3 18 344 360 342 361 0.81 XPA protein N-terminal XPA_N PF01286.18 32 ZNF329-203 - 541 2e-10 40.5 54.5 8 13 0.042 30 4.8 0.2 3 12 372 381 370 386 0.89 XPA protein N-terminal XPA_N PF01286.18 32 ZNF329-203 - 541 2e-10 40.5 54.5 9 13 0.00041 0.3 11.2 0.1 3 17 400 414 398 417 0.87 XPA protein N-terminal XPA_N PF01286.18 32 ZNF329-203 - 541 2e-10 40.5 54.5 10 13 1 7.2e+02 0.4 0.1 4 11 429 436 427 438 0.87 XPA protein N-terminal XPA_N PF01286.18 32 ZNF329-203 - 541 2e-10 40.5 54.5 11 13 0.0042 3 8.0 0.8 3 14 456 467 454 473 0.88 XPA protein N-terminal XPA_N PF01286.18 32 ZNF329-203 - 541 2e-10 40.5 54.5 12 13 0.064 46 4.2 0.2 3 12 484 493 482 498 0.87 XPA protein N-terminal XPA_N PF01286.18 32 ZNF329-203 - 541 2e-10 40.5 54.5 13 13 0.044 32 4.7 0.3 3 14 512 523 510 526 0.90 XPA protein N-terminal zf_UBZ PF18439.1 32 ZNF329-203 - 541 2.4e-10 39.8 51.8 1 12 0.016 12 5.6 1.0 2 13 202 213 201 218 0.85 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF329-203 - 541 2.4e-10 39.8 51.8 2 12 0.0026 1.8 8.2 0.1 3 15 231 243 229 250 0.83 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF329-203 - 541 2.4e-10 39.8 51.8 3 12 0.00089 0.63 9.7 0.1 3 21 259 278 257 278 0.90 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF329-203 - 541 2.4e-10 39.8 51.8 4 12 0.042 30 4.3 0.1 3 13 287 297 285 305 0.86 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF329-203 - 541 2.4e-10 39.8 51.8 5 12 0.043 31 4.3 0.1 3 13 315 325 313 330 0.86 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF329-203 - 541 2.4e-10 39.8 51.8 6 12 0.013 9.7 5.9 0.1 3 14 343 354 341 362 0.78 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF329-203 - 541 2.4e-10 39.8 51.8 7 12 0.014 10 5.8 0.1 3 13 371 381 369 386 0.83 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF329-203 - 541 2.4e-10 39.8 51.8 8 12 0.005 3.6 7.3 0.1 3 15 399 411 397 417 0.87 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF329-203 - 541 2.4e-10 39.8 51.8 9 12 2.5 1.8e+03 -1.4 0.2 3 11 427 435 426 437 0.80 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF329-203 - 541 2.4e-10 39.8 51.8 10 12 0.093 67 3.2 0.7 3 15 455 467 453 474 0.80 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF329-203 - 541 2.4e-10 39.8 51.8 11 12 0.00065 0.46 10.1 0.2 3 15 483 495 481 502 0.82 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF329-203 - 541 2.4e-10 39.8 51.8 12 12 0.0075 5.4 6.7 0.2 5 16 513 525 511 530 0.79 Ubiquitin-Binding Zinc Finger DZR PF12773.7 49 ZNF329-203 - 541 3.5e-08 33.3 51.4 1 3 5.5 3.9e+03 -2.0 20.0 14 43 232 273 191 361 0.64 Double zinc ribbon DZR PF12773.7 49 ZNF329-203 - 541 3.5e-08 33.3 51.4 2 3 0.052 37 4.4 9.9 1 38 345 408 345 439 0.75 Double zinc ribbon DZR PF12773.7 49 ZNF329-203 - 541 3.5e-08 33.3 51.4 3 3 0.0015 1.1 9.4 15.1 1 40 457 522 417 526 0.92 Double zinc ribbon zinc_ribbon_15 PF17032.5 86 ZNF329-203 - 541 1.4e-07 32.1 43.6 1 6 0.0057 4.1 8.2 4.1 37 80 202 245 195 249 0.90 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF329-203 - 541 1.4e-07 32.1 43.6 2 6 0.00089 0.63 10.8 0.7 31 78 252 299 246 302 0.85 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF329-203 - 541 1.4e-07 32.1 43.6 3 6 0.0062 4.5 8.1 0.4 34 75 311 352 302 358 0.86 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF329-203 - 541 1.4e-07 32.1 43.6 4 6 0.012 8.7 7.2 4.6 38 78 343 383 334 413 0.61 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF329-203 - 541 1.4e-07 32.1 43.6 5 6 0.00063 0.45 11.3 0.9 26 76 415 465 409 470 0.86 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF329-203 - 541 1.4e-07 32.1 43.6 6 6 0.00074 0.53 11.1 1.8 30 78 475 523 467 526 0.81 zinc-ribbon family # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF329-203.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF329-203.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF329-203.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF329-203.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF329-203.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:04:06 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZNF329-204 - 541 2.8e-91 296.2 92.9 1 14 4.1 3e+03 -1.0 0.1 19 26 124 131 123 131 0.87 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF329-204 - 541 2.8e-91 296.2 92.9 2 14 0.00037 0.27 11.7 1.8 10 26 198 214 195 214 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF329-204 - 541 2.8e-91 296.2 92.9 3 14 3.9e-10 2.8e-07 30.6 2.1 2 25 218 241 217 242 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF329-204 - 541 2.8e-91 296.2 92.9 4 14 7e-12 5e-09 36.2 0.1 1 25 245 269 245 270 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF329-204 - 541 2.8e-91 296.2 92.9 5 14 8.2e-12 5.9e-09 36.0 0.3 1 25 273 297 273 298 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF329-204 - 541 2.8e-91 296.2 92.9 6 14 8.6e-09 6.2e-06 26.4 0.6 2 24 302 324 301 325 0.88 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF329-204 - 541 2.8e-91 296.2 92.9 7 14 7.5e-12 5.4e-09 36.1 1.4 1 24 329 352 329 353 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF329-204 - 541 2.8e-91 296.2 92.9 8 14 2.4e-11 1.7e-08 34.5 0.9 2 25 358 381 357 382 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF329-204 - 541 2.8e-91 296.2 92.9 9 14 1e-09 7.3e-07 29.3 1.1 2 24 386 408 385 409 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF329-204 - 541 2.8e-91 296.2 92.9 10 14 3.1e-08 2.2e-05 24.7 0.4 2 25 414 437 413 438 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF329-204 - 541 2.8e-91 296.2 92.9 11 14 7.3e-12 5.2e-09 36.1 0.3 2 24 442 464 441 465 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF329-204 - 541 2.8e-91 296.2 92.9 12 14 3.7e-12 2.7e-09 37.1 2.0 2 26 470 494 470 494 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF329-204 - 541 2.8e-91 296.2 92.9 13 14 8.7e-05 0.063 13.7 0.7 1 24 497 520 497 522 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF329-204 - 541 2.8e-91 296.2 92.9 14 14 0.13 90 3.8 0.1 1 14 525 538 525 540 0.90 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZNF329-204 - 541 6.4e-77 249.9 87.2 1 13 3.1 2.2e+03 -0.6 0.0 6 13 125 132 124 136 0.86 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF329-204 - 541 6.4e-77 249.9 87.2 2 13 3.3e-08 2.4e-05 24.5 6.4 1 23 203 225 203 225 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF329-204 - 541 6.4e-77 249.9 87.2 3 13 4.2e-10 3e-07 30.5 0.7 1 23 231 253 231 253 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF329-204 - 541 6.4e-77 249.9 87.2 4 13 7.4e-08 5.3e-05 23.4 0.2 1 23 259 281 259 281 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF329-204 - 541 6.4e-77 249.9 87.2 5 13 5.3e-09 3.8e-06 27.0 0.6 1 23 287 309 287 309 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF329-204 - 541 6.4e-77 249.9 87.2 6 13 1.9e-09 1.4e-06 28.5 0.9 1 23 315 337 315 337 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF329-204 - 541 6.4e-77 249.9 87.2 7 13 2.5e-07 0.00018 21.8 0.7 1 23 343 365 343 365 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF329-204 - 541 6.4e-77 249.9 87.2 8 13 2.8e-09 2e-06 27.9 0.7 1 23 371 393 371 393 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF329-204 - 541 6.4e-77 249.9 87.2 9 13 6.7e-08 4.8e-05 23.6 0.2 1 23 399 421 399 421 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF329-204 - 541 6.4e-77 249.9 87.2 10 13 3.5e-05 0.025 15.0 0.4 3 23 429 449 427 449 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF329-204 - 541 6.4e-77 249.9 87.2 11 13 1.3e-08 9.5e-06 25.8 2.4 1 23 455 477 455 477 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF329-204 - 541 6.4e-77 249.9 87.2 12 13 1.1e-10 7.5e-08 32.4 1.3 1 23 483 505 483 505 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF329-204 - 541 6.4e-77 249.9 87.2 13 13 1.8e-07 0.00013 22.2 1.1 2 23 512 533 511 533 0.97 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZNF329-204 - 541 3.7e-42 139.3 83.7 1 12 0.00036 0.26 12.2 5.1 1 23 203 225 203 226 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF329-204 - 541 3.7e-42 139.3 83.7 2 12 1.5e-05 0.011 16.5 0.4 1 23 231 253 231 254 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF329-204 - 541 3.7e-42 139.3 83.7 3 12 1.8e-05 0.013 16.3 0.2 1 23 259 281 259 282 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF329-204 - 541 3.7e-42 139.3 83.7 4 12 3.2e-05 0.023 15.5 0.5 1 23 287 309 287 310 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF329-204 - 541 3.7e-42 139.3 83.7 5 12 6e-06 0.0043 17.8 0.5 1 23 315 337 315 338 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF329-204 - 541 3.7e-42 139.3 83.7 6 12 3.1e-05 0.022 15.6 0.5 1 23 343 365 343 366 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF329-204 - 541 3.7e-42 139.3 83.7 7 12 2.5e-05 0.018 15.9 0.8 1 23 371 393 371 394 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF329-204 - 541 3.7e-42 139.3 83.7 8 12 3e-05 0.022 15.6 0.2 1 23 399 421 399 422 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF329-204 - 541 3.7e-42 139.3 83.7 9 12 6.5e-05 0.046 14.6 0.2 2 23 428 449 427 450 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF329-204 - 541 3.7e-42 139.3 83.7 10 12 2.6e-05 0.018 15.8 1.9 1 23 455 477 455 478 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF329-204 - 541 3.7e-42 139.3 83.7 11 12 2.9e-06 0.0021 18.7 1.5 1 23 483 505 483 506 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF329-204 - 541 3.7e-42 139.3 83.7 12 12 3.9e-06 0.0028 18.3 0.9 2 23 512 533 511 534 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF329-204 - 541 3.7e-21 74.6 85.8 1 12 0.012 8.8 6.5 4.3 2 24 203 225 202 228 0.88 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF329-204 - 541 3.7e-21 74.6 85.8 2 12 9.8e-06 0.007 16.3 0.4 2 24 231 253 231 256 0.89 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF329-204 - 541 3.7e-21 74.6 85.8 3 12 3e-05 0.021 14.8 0.6 2 24 259 281 259 284 0.91 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF329-204 - 541 3.7e-21 74.6 85.8 4 12 6e-05 0.043 13.8 0.5 2 24 287 309 287 312 0.95 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF329-204 - 541 3.7e-21 74.6 85.8 5 12 0.0055 3.9 7.6 0.2 2 21 315 334 315 339 0.77 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF329-204 - 541 3.7e-21 74.6 85.8 6 12 0.00033 0.24 11.5 1.2 2 24 343 365 343 368 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF329-204 - 541 3.7e-21 74.6 85.8 7 12 0.00044 0.31 11.1 0.6 2 13 371 382 371 395 0.82 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF329-204 - 541 3.7e-21 74.6 85.8 8 12 0.0012 0.82 9.7 1.7 2 11 399 408 399 408 0.97 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF329-204 - 541 3.7e-21 74.6 85.8 9 12 0.00051 0.36 10.9 0.2 2 24 427 449 427 452 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF329-204 - 541 3.7e-21 74.6 85.8 10 12 0.0037 2.7 8.1 1.4 2 12 455 465 455 479 0.89 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF329-204 - 541 3.7e-21 74.6 85.8 11 12 0.0014 1 9.4 0.8 2 12 483 493 483 494 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF329-204 - 541 3.7e-21 74.6 85.8 12 12 0.0022 1.6 8.9 0.8 3 25 512 534 512 536 0.92 C2H2-type zinc finger Zn-ribbon_8 PF09723.10 40 ZNF329-204 - 541 1.3e-16 60.4 63.6 1 11 9.6 6.9e+03 -2.7 0.0 10 17 124 131 123 139 0.74 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF329-204 - 541 1.3e-16 60.4 63.6 2 11 0.00017 0.13 12.5 6.6 5 38 202 242 202 244 0.85 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF329-204 - 541 1.3e-16 60.4 63.6 3 11 1.5e-05 0.011 15.9 2.6 6 34 231 266 230 270 0.93 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF329-204 - 541 1.3e-16 60.4 63.6 4 11 9.8e-05 0.071 13.2 4.1 6 38 259 298 257 299 0.92 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF329-204 - 541 1.3e-16 60.4 63.6 5 11 0.0049 3.5 7.8 0.3 6 18 287 299 286 310 0.83 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF329-204 - 541 1.3e-16 60.4 63.6 6 11 6e-06 0.0043 17.1 1.7 6 36 315 352 314 354 0.85 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF329-204 - 541 1.3e-16 60.4 63.6 7 11 1.2e-05 0.0087 16.2 3.5 6 34 371 406 370 409 0.93 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF329-204 - 541 1.3e-16 60.4 63.6 8 11 9.3e-05 0.067 13.3 2.8 6 34 399 434 398 440 0.91 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF329-204 - 541 1.3e-16 60.4 63.6 9 11 0.0018 1.3 9.2 2.7 6 36 427 464 426 466 0.86 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF329-204 - 541 1.3e-16 60.4 63.6 10 11 5.5e-06 0.004 17.2 6.3 6 35 455 491 453 495 0.89 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF329-204 - 541 1.3e-16 60.4 63.6 11 11 3.5e-06 0.0025 17.9 3.7 6 37 483 521 482 523 0.84 Zinc ribbon domain zf-C2H2_jaz PF12171.8 27 ZNF329-204 - 541 4.1e-16 58.8 53.4 1 13 4.3 3.1e+03 -1.4 0.0 6 14 124 132 123 134 0.83 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF329-204 - 541 4.1e-16 58.8 53.4 2 13 0.032 23 5.4 2.1 1 20 202 221 202 225 0.91 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF329-204 - 541 4.1e-16 58.8 53.4 3 13 0.0054 3.9 7.9 0.3 2 22 231 251 230 251 0.91 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF329-204 - 541 4.1e-16 58.8 53.4 4 13 0.025 18 5.7 0.0 2 22 259 279 258 279 0.91 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF329-204 - 541 4.1e-16 58.8 53.4 5 13 4.3e-05 0.031 14.6 0.1 2 24 287 309 286 309 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF329-204 - 541 4.1e-16 58.8 53.4 6 13 0.034 24 5.4 0.0 2 22 315 335 314 335 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF329-204 - 541 4.1e-16 58.8 53.4 7 13 0.049 35 4.8 0.1 2 24 343 365 342 365 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF329-204 - 541 4.1e-16 58.8 53.4 8 13 0.0012 0.9 9.9 0.2 2 22 371 391 370 391 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF329-204 - 541 4.1e-16 58.8 53.4 9 13 0.00039 0.28 11.5 0.1 2 22 399 419 398 419 0.91 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF329-204 - 541 4.1e-16 58.8 53.4 10 13 0.1 75 3.8 0.1 4 24 429 449 427 449 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF329-204 - 541 4.1e-16 58.8 53.4 11 13 0.19 1.4e+02 2.9 0.6 2 21 455 474 454 475 0.89 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF329-204 - 541 4.1e-16 58.8 53.4 12 13 0.03 22 5.5 0.2 4 21 485 502 482 503 0.84 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF329-204 - 541 4.1e-16 58.8 53.4 13 13 0.00032 0.23 11.8 0.0 3 22 512 531 510 531 0.92 Zinc-finger double-stranded RNA-binding XPA_N PF01286.18 32 ZNF329-204 - 541 2e-10 40.5 54.5 1 13 3.6 2.6e+03 -1.4 0.0 6 14 124 132 123 133 0.83 XPA protein N-terminal XPA_N PF01286.18 32 ZNF329-204 - 541 2e-10 40.5 54.5 2 13 0.19 1.4e+02 2.7 0.8 3 12 204 213 202 218 0.87 XPA protein N-terminal XPA_N PF01286.18 32 ZNF329-204 - 541 2e-10 40.5 54.5 3 13 0.014 10 6.3 0.2 3 13 232 242 230 245 0.86 XPA protein N-terminal XPA_N PF01286.18 32 ZNF329-204 - 541 2e-10 40.5 54.5 4 13 0.015 11 6.2 0.1 3 13 260 270 258 277 0.88 XPA protein N-terminal XPA_N PF01286.18 32 ZNF329-204 - 541 2e-10 40.5 54.5 5 13 0.0081 5.8 7.0 0.1 3 12 288 297 286 302 0.89 XPA protein N-terminal XPA_N PF01286.18 32 ZNF329-204 - 541 2e-10 40.5 54.5 6 13 0.0028 2 8.5 0.1 3 13 316 326 314 330 0.91 XPA protein N-terminal XPA_N PF01286.18 32 ZNF329-204 - 541 2e-10 40.5 54.5 7 13 0.0025 1.8 8.7 0.1 3 18 344 360 342 361 0.81 XPA protein N-terminal XPA_N PF01286.18 32 ZNF329-204 - 541 2e-10 40.5 54.5 8 13 0.042 30 4.8 0.2 3 12 372 381 370 386 0.89 XPA protein N-terminal XPA_N PF01286.18 32 ZNF329-204 - 541 2e-10 40.5 54.5 9 13 0.00041 0.3 11.2 0.1 3 17 400 414 398 417 0.87 XPA protein N-terminal XPA_N PF01286.18 32 ZNF329-204 - 541 2e-10 40.5 54.5 10 13 1 7.2e+02 0.4 0.1 4 11 429 436 427 438 0.87 XPA protein N-terminal XPA_N PF01286.18 32 ZNF329-204 - 541 2e-10 40.5 54.5 11 13 0.0042 3 8.0 0.8 3 14 456 467 454 473 0.88 XPA protein N-terminal XPA_N PF01286.18 32 ZNF329-204 - 541 2e-10 40.5 54.5 12 13 0.064 46 4.2 0.2 3 12 484 493 482 498 0.87 XPA protein N-terminal XPA_N PF01286.18 32 ZNF329-204 - 541 2e-10 40.5 54.5 13 13 0.044 32 4.7 0.3 3 14 512 523 510 526 0.90 XPA protein N-terminal zf_UBZ PF18439.1 32 ZNF329-204 - 541 2.4e-10 39.8 51.8 1 12 0.016 12 5.6 1.0 2 13 202 213 201 218 0.85 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF329-204 - 541 2.4e-10 39.8 51.8 2 12 0.0026 1.8 8.2 0.1 3 15 231 243 229 250 0.83 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF329-204 - 541 2.4e-10 39.8 51.8 3 12 0.00089 0.63 9.7 0.1 3 21 259 278 257 278 0.90 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF329-204 - 541 2.4e-10 39.8 51.8 4 12 0.042 30 4.3 0.1 3 13 287 297 285 305 0.86 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF329-204 - 541 2.4e-10 39.8 51.8 5 12 0.043 31 4.3 0.1 3 13 315 325 313 330 0.86 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF329-204 - 541 2.4e-10 39.8 51.8 6 12 0.013 9.7 5.9 0.1 3 14 343 354 341 362 0.78 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF329-204 - 541 2.4e-10 39.8 51.8 7 12 0.014 10 5.8 0.1 3 13 371 381 369 386 0.83 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF329-204 - 541 2.4e-10 39.8 51.8 8 12 0.005 3.6 7.3 0.1 3 15 399 411 397 417 0.87 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF329-204 - 541 2.4e-10 39.8 51.8 9 12 2.5 1.8e+03 -1.4 0.2 3 11 427 435 426 437 0.80 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF329-204 - 541 2.4e-10 39.8 51.8 10 12 0.093 67 3.2 0.7 3 15 455 467 453 474 0.80 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF329-204 - 541 2.4e-10 39.8 51.8 11 12 0.00065 0.46 10.1 0.2 3 15 483 495 481 502 0.82 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF329-204 - 541 2.4e-10 39.8 51.8 12 12 0.0075 5.4 6.7 0.2 5 16 513 525 511 530 0.79 Ubiquitin-Binding Zinc Finger DZR PF12773.7 49 ZNF329-204 - 541 3.5e-08 33.3 51.4 1 3 5.5 3.9e+03 -2.0 20.0 14 43 232 273 191 361 0.64 Double zinc ribbon DZR PF12773.7 49 ZNF329-204 - 541 3.5e-08 33.3 51.4 2 3 0.052 37 4.4 9.9 1 38 345 408 345 439 0.75 Double zinc ribbon DZR PF12773.7 49 ZNF329-204 - 541 3.5e-08 33.3 51.4 3 3 0.0015 1.1 9.4 15.1 1 40 457 522 417 526 0.92 Double zinc ribbon zinc_ribbon_15 PF17032.5 86 ZNF329-204 - 541 1.4e-07 32.1 43.6 1 6 0.0057 4.1 8.2 4.1 37 80 202 245 195 249 0.90 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF329-204 - 541 1.4e-07 32.1 43.6 2 6 0.00089 0.63 10.8 0.7 31 78 252 299 246 302 0.85 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF329-204 - 541 1.4e-07 32.1 43.6 3 6 0.0062 4.5 8.1 0.4 34 75 311 352 302 358 0.86 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF329-204 - 541 1.4e-07 32.1 43.6 4 6 0.012 8.7 7.2 4.6 38 78 343 383 334 413 0.61 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF329-204 - 541 1.4e-07 32.1 43.6 5 6 0.00063 0.45 11.3 0.9 26 76 415 465 409 470 0.86 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF329-204 - 541 1.4e-07 32.1 43.6 6 6 0.00074 0.53 11.1 1.8 30 78 475 523 467 526 0.81 zinc-ribbon family # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF329-204.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF329-204.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF329-204.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF329-204.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF329-204.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:04:06 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF329-205.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF329-205.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF329-205.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF329-205.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF329-205.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:04:07 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZNF331-201 - 463 7.4e-94 304.4 104.0 1 13 6.4e-06 0.0058 17.0 2.7 8 25 124 141 120 142 0.86 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF331-201 - 463 7.4e-94 304.4 104.0 2 13 1.9e-11 1.7e-08 34.5 1.5 2 24 146 168 145 169 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF331-201 - 463 7.4e-94 304.4 104.0 3 13 2.3e-11 2.1e-08 34.2 0.6 2 24 174 196 173 197 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF331-201 - 463 7.4e-94 304.4 104.0 4 13 2.9e-11 2.6e-08 33.9 0.4 2 25 202 225 201 226 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF331-201 - 463 7.4e-94 304.4 104.0 5 13 7.5e-11 6.7e-08 32.6 1.0 2 25 230 253 229 254 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF331-201 - 463 7.4e-94 304.4 104.0 6 13 5.8e-10 5.2e-07 29.8 1.4 2 24 258 280 257 282 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF331-201 - 463 7.4e-94 304.4 104.0 7 13 7e-12 6.3e-09 35.9 0.3 2 26 286 310 285 310 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF331-201 - 463 7.4e-94 304.4 104.0 8 13 5.9e-11 5.3e-08 32.9 2.3 2 24 314 336 313 337 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF331-201 - 463 7.4e-94 304.4 104.0 9 13 6.9e-12 6.2e-09 35.9 2.1 1 25 341 365 341 366 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF331-201 - 463 7.4e-94 304.4 104.0 10 13 1.7e-11 1.5e-08 34.6 1.5 1 24 369 392 369 394 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF331-201 - 463 7.4e-94 304.4 104.0 11 13 1.1e-09 9.7e-07 29.0 0.9 1 26 397 422 397 422 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF331-201 - 463 7.4e-94 304.4 104.0 12 13 6.7e-07 0.0006 20.1 3.2 2 26 426 450 425 450 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF331-201 - 463 7.4e-94 304.4 104.0 13 13 1.2 1.1e+03 0.3 1.6 1 10 453 462 453 463 0.86 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZNF331-201 - 463 2.1e-49 163.3 98.9 1 12 3.6e-08 3.2e-05 24.1 0.5 1 23 131 153 131 153 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF331-201 - 463 2.1e-49 163.3 98.9 2 12 0.00013 0.12 12.9 0.5 1 23 159 181 159 181 0.95 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF331-201 - 463 2.1e-49 163.3 98.9 3 12 8e-06 0.0071 16.7 0.1 1 23 187 209 187 209 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF331-201 - 463 2.1e-49 163.3 98.9 4 12 2.9e-08 2.6e-05 24.4 0.6 1 23 215 237 215 237 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF331-201 - 463 2.1e-49 163.3 98.9 5 12 2.1e-08 1.8e-05 24.9 1.1 1 23 243 265 243 265 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF331-201 - 463 2.1e-49 163.3 98.9 6 12 2.7e-05 0.024 15.1 0.7 1 23 271 293 271 293 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF331-201 - 463 2.1e-49 163.3 98.9 7 12 1.4e-07 0.00012 22.3 0.4 1 23 299 321 299 321 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF331-201 - 463 2.1e-49 163.3 98.9 8 12 2.6e-05 0.024 15.1 0.4 1 23 327 349 327 349 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF331-201 - 463 2.1e-49 163.3 98.9 9 12 5.6e-05 0.05 14.1 3.5 1 23 355 377 355 377 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF331-201 - 463 2.1e-49 163.3 98.9 10 12 1.9e-07 0.00017 21.9 0.3 1 23 383 405 383 405 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF331-201 - 463 2.1e-49 163.3 98.9 11 12 2.1e-06 0.0019 18.5 3.7 3 23 413 433 411 433 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF331-201 - 463 2.1e-49 163.3 98.9 12 12 2.6e-06 0.0024 18.2 4.7 1 23 439 461 439 461 0.98 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZNF331-201 - 463 6.8e-29 98.1 95.8 1 12 3.9e-06 0.0035 18.0 0.5 1 23 131 153 131 154 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF331-201 - 463 6.8e-29 98.1 95.8 2 12 0.0024 2.1 9.4 0.6 1 23 159 181 159 182 0.90 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF331-201 - 463 6.8e-29 98.1 95.8 3 12 0.0037 3.3 8.8 0.2 1 23 187 209 187 210 0.89 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF331-201 - 463 6.8e-29 98.1 95.8 4 12 3.9e-05 0.035 15.0 0.4 1 23 215 237 215 238 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF331-201 - 463 6.8e-29 98.1 95.8 5 12 1.2e-06 0.0011 19.6 0.8 1 23 243 265 243 266 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF331-201 - 463 6.8e-29 98.1 95.8 6 12 5.8e-05 0.052 14.4 0.7 1 23 271 293 271 294 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF331-201 - 463 6.8e-29 98.1 95.8 7 12 2.2e-05 0.02 15.7 0.4 1 23 299 321 299 322 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF331-201 - 463 6.8e-29 98.1 95.8 8 12 0.0016 1.5 9.9 0.7 1 23 327 349 327 350 0.91 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF331-201 - 463 6.8e-29 98.1 95.8 9 12 2.3e-05 0.021 15.7 2.7 1 23 355 377 355 378 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF331-201 - 463 6.8e-29 98.1 95.8 10 12 9.1e-05 0.081 13.8 0.3 1 23 383 405 383 406 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF331-201 - 463 6.8e-29 98.1 95.8 11 12 6.5e-05 0.058 14.3 3.1 2 23 412 433 411 434 0.89 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF331-201 - 463 6.8e-29 98.1 95.8 12 12 0.0063 5.6 8.1 3.7 1 23 439 461 439 462 0.95 C2H2-type zinc finger KRAB PF01352.27 42 ZNF331-201 - 463 2.5e-26 91.0 0.4 1 1 5e-29 4.5e-26 90.2 0.4 1 42 5 46 5 46 0.99 KRAB box zf-C2H2_6 PF13912.6 27 ZNF331-201 - 463 6.8e-26 89.7 107.2 1 12 9.6e-05 0.086 12.9 1.2 2 24 131 153 130 156 0.90 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF331-201 - 463 6.8e-26 89.7 107.2 2 12 2.9e-05 0.026 14.5 1.0 2 24 159 181 159 184 0.91 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF331-201 - 463 6.8e-26 89.7 107.2 3 12 0.00045 0.41 10.7 0.1 2 24 187 209 187 212 0.92 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF331-201 - 463 6.8e-26 89.7 107.2 4 12 4.7e-06 0.0042 17.1 0.6 2 24 215 237 215 240 0.92 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF331-201 - 463 6.8e-26 89.7 107.2 5 12 9.7e-07 0.00087 19.2 0.5 2 25 243 266 242 268 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF331-201 - 463 6.8e-26 89.7 107.2 6 12 0.00052 0.47 10.5 1.0 2 24 271 293 271 296 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF331-201 - 463 6.8e-26 89.7 107.2 7 12 7.9e-05 0.071 13.1 0.7 2 24 299 321 299 324 0.87 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF331-201 - 463 6.8e-26 89.7 107.2 8 12 2.3e-05 0.02 14.9 0.8 2 22 327 347 327 351 0.89 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF331-201 - 463 6.8e-26 89.7 107.2 9 12 0.0004 0.36 10.9 3.9 2 22 355 375 355 379 0.90 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF331-201 - 463 6.8e-26 89.7 107.2 10 12 2.9e-05 0.026 14.5 0.7 2 22 383 403 383 407 0.91 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF331-201 - 463 6.8e-26 89.7 107.2 11 12 0.0002 0.18 11.9 6.8 2 24 411 433 411 435 0.95 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF331-201 - 463 6.8e-26 89.7 107.2 12 12 0.016 14 5.8 4.5 2 24 439 461 438 463 0.84 C2H2-type zinc finger Zn-ribbon_8 PF09723.10 40 ZNF331-201 - 463 1.4e-16 60.3 67.1 1 7 3.9e-05 0.035 14.2 3.9 6 35 131 167 130 170 0.91 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF331-201 - 463 1.4e-16 60.3 67.1 2 7 7.8e-07 0.0007 19.7 1.2 6 38 187 226 186 227 0.89 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF331-201 - 463 1.4e-16 60.3 67.1 3 7 1.4e-05 0.013 15.6 5.0 5 34 242 278 241 280 0.79 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF331-201 - 463 1.4e-16 60.3 67.1 4 7 0.016 14 5.8 0.9 6 15 271 280 269 288 0.93 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF331-201 - 463 1.4e-16 60.3 67.1 5 7 9.9e-07 0.00089 19.3 3.3 6 35 299 335 298 337 0.92 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF331-201 - 463 1.4e-16 60.3 67.1 6 7 0.0012 1.1 9.4 7.7 6 34 355 390 354 393 0.87 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF331-201 - 463 1.4e-16 60.3 67.1 7 7 0.0012 1 9.5 6.5 6 35 411 447 410 451 0.88 Zinc ribbon domain zf-C2H2_jaz PF12171.8 27 ZNF331-201 - 463 1.1e-12 47.9 61.2 1 12 0.00093 0.83 10.0 0.3 2 22 131 151 130 151 0.95 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF331-201 - 463 1.1e-12 47.9 61.2 2 12 0.0013 1.1 9.6 0.5 2 22 159 179 158 179 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF331-201 - 463 1.1e-12 47.9 61.2 3 12 0.46 4.2e+02 1.4 0.1 2 11 187 196 186 206 0.89 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF331-201 - 463 1.1e-12 47.9 61.2 4 12 0.025 22 5.5 0.0 2 22 215 235 214 235 0.90 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF331-201 - 463 1.1e-12 47.9 61.2 5 12 0.0014 1.3 9.4 0.4 2 22 243 263 242 263 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF331-201 - 463 1.1e-12 47.9 61.2 6 12 0.089 80 3.7 0.3 2 21 271 290 270 291 0.82 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF331-201 - 463 1.1e-12 47.9 61.2 7 12 0.00041 0.37 11.1 0.2 2 22 299 319 298 319 0.95 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF331-201 - 463 1.1e-12 47.9 61.2 8 12 0.029 26 5.2 0.0 2 21 327 346 326 347 0.83 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF331-201 - 463 1.1e-12 47.9 61.2 9 12 0.1 93 3.5 1.1 2 21 355 374 354 375 0.79 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF331-201 - 463 1.1e-12 47.9 61.2 10 12 0.007 6.2 7.2 0.1 2 22 383 403 382 403 0.89 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF331-201 - 463 1.1e-12 47.9 61.2 11 12 0.00016 0.14 12.4 1.0 4 24 413 433 410 434 0.95 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF331-201 - 463 1.1e-12 47.9 61.2 12 12 0.023 20 5.6 3.1 2 22 439 459 438 459 0.93 Zinc-finger double-stranded RNA-binding zf-trcl PF13451.6 48 ZNF331-201 - 463 9.8e-07 28.6 59.1 1 11 0.053 47 4.0 6.6 4 42 130 167 127 172 0.81 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF331-201 - 463 9.8e-07 28.6 59.1 2 11 0.0017 1.5 8.8 0.1 3 16 185 198 183 201 0.87 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF331-201 - 463 9.8e-07 28.6 59.1 3 11 0.0099 8.9 6.3 0.2 3 14 213 224 211 225 0.88 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF331-201 - 463 9.8e-07 28.6 59.1 4 11 0.016 14 5.7 0.7 3 14 241 252 240 253 0.87 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF331-201 - 463 9.8e-07 28.6 59.1 5 11 0.0037 3.3 7.7 0.6 3 15 269 281 267 283 0.90 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF331-201 - 463 9.8e-07 28.6 59.1 6 11 0.032 29 4.7 0.1 3 15 297 309 295 312 0.89 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF331-201 - 463 9.8e-07 28.6 59.1 7 11 0.019 17 5.4 0.1 3 16 325 338 323 341 0.84 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF331-201 - 463 9.8e-07 28.6 59.1 8 11 0.034 30 4.6 0.1 3 14 353 364 351 365 0.87 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF331-201 - 463 9.8e-07 28.6 59.1 9 11 0.0027 2.5 8.1 0.1 4 16 382 394 380 397 0.86 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF331-201 - 463 9.8e-07 28.6 59.1 10 11 0.13 1.2e+02 2.7 0.1 3 14 409 420 409 433 0.88 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF331-201 - 463 9.8e-07 28.6 59.1 11 11 0.65 5.8e+02 0.5 1.2 3 12 437 446 435 449 0.84 Probable zinc-ribbon domain # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF331-201.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF331-201.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF331-201.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF331-201.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF331-201.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:04:07 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZNF331-202 - 463 7.4e-94 304.4 104.0 1 13 6.4e-06 0.0058 17.0 2.7 8 25 124 141 120 142 0.86 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF331-202 - 463 7.4e-94 304.4 104.0 2 13 1.9e-11 1.7e-08 34.5 1.5 2 24 146 168 145 169 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF331-202 - 463 7.4e-94 304.4 104.0 3 13 2.3e-11 2.1e-08 34.2 0.6 2 24 174 196 173 197 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF331-202 - 463 7.4e-94 304.4 104.0 4 13 2.9e-11 2.6e-08 33.9 0.4 2 25 202 225 201 226 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF331-202 - 463 7.4e-94 304.4 104.0 5 13 7.5e-11 6.7e-08 32.6 1.0 2 25 230 253 229 254 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF331-202 - 463 7.4e-94 304.4 104.0 6 13 5.8e-10 5.2e-07 29.8 1.4 2 24 258 280 257 282 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF331-202 - 463 7.4e-94 304.4 104.0 7 13 7e-12 6.3e-09 35.9 0.3 2 26 286 310 285 310 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF331-202 - 463 7.4e-94 304.4 104.0 8 13 5.9e-11 5.3e-08 32.9 2.3 2 24 314 336 313 337 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF331-202 - 463 7.4e-94 304.4 104.0 9 13 6.9e-12 6.2e-09 35.9 2.1 1 25 341 365 341 366 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF331-202 - 463 7.4e-94 304.4 104.0 10 13 1.7e-11 1.5e-08 34.6 1.5 1 24 369 392 369 394 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF331-202 - 463 7.4e-94 304.4 104.0 11 13 1.1e-09 9.7e-07 29.0 0.9 1 26 397 422 397 422 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF331-202 - 463 7.4e-94 304.4 104.0 12 13 6.7e-07 0.0006 20.1 3.2 2 26 426 450 425 450 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF331-202 - 463 7.4e-94 304.4 104.0 13 13 1.2 1.1e+03 0.3 1.6 1 10 453 462 453 463 0.86 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZNF331-202 - 463 2.1e-49 163.3 98.9 1 12 3.6e-08 3.2e-05 24.1 0.5 1 23 131 153 131 153 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF331-202 - 463 2.1e-49 163.3 98.9 2 12 0.00013 0.12 12.9 0.5 1 23 159 181 159 181 0.95 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF331-202 - 463 2.1e-49 163.3 98.9 3 12 8e-06 0.0071 16.7 0.1 1 23 187 209 187 209 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF331-202 - 463 2.1e-49 163.3 98.9 4 12 2.9e-08 2.6e-05 24.4 0.6 1 23 215 237 215 237 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF331-202 - 463 2.1e-49 163.3 98.9 5 12 2.1e-08 1.8e-05 24.9 1.1 1 23 243 265 243 265 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF331-202 - 463 2.1e-49 163.3 98.9 6 12 2.7e-05 0.024 15.1 0.7 1 23 271 293 271 293 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF331-202 - 463 2.1e-49 163.3 98.9 7 12 1.4e-07 0.00012 22.3 0.4 1 23 299 321 299 321 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF331-202 - 463 2.1e-49 163.3 98.9 8 12 2.6e-05 0.024 15.1 0.4 1 23 327 349 327 349 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF331-202 - 463 2.1e-49 163.3 98.9 9 12 5.6e-05 0.05 14.1 3.5 1 23 355 377 355 377 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF331-202 - 463 2.1e-49 163.3 98.9 10 12 1.9e-07 0.00017 21.9 0.3 1 23 383 405 383 405 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF331-202 - 463 2.1e-49 163.3 98.9 11 12 2.1e-06 0.0019 18.5 3.7 3 23 413 433 411 433 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF331-202 - 463 2.1e-49 163.3 98.9 12 12 2.6e-06 0.0024 18.2 4.7 1 23 439 461 439 461 0.98 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZNF331-202 - 463 6.8e-29 98.1 95.8 1 12 3.9e-06 0.0035 18.0 0.5 1 23 131 153 131 154 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF331-202 - 463 6.8e-29 98.1 95.8 2 12 0.0024 2.1 9.4 0.6 1 23 159 181 159 182 0.90 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF331-202 - 463 6.8e-29 98.1 95.8 3 12 0.0037 3.3 8.8 0.2 1 23 187 209 187 210 0.89 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF331-202 - 463 6.8e-29 98.1 95.8 4 12 3.9e-05 0.035 15.0 0.4 1 23 215 237 215 238 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF331-202 - 463 6.8e-29 98.1 95.8 5 12 1.2e-06 0.0011 19.6 0.8 1 23 243 265 243 266 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF331-202 - 463 6.8e-29 98.1 95.8 6 12 5.8e-05 0.052 14.4 0.7 1 23 271 293 271 294 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF331-202 - 463 6.8e-29 98.1 95.8 7 12 2.2e-05 0.02 15.7 0.4 1 23 299 321 299 322 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF331-202 - 463 6.8e-29 98.1 95.8 8 12 0.0016 1.5 9.9 0.7 1 23 327 349 327 350 0.91 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF331-202 - 463 6.8e-29 98.1 95.8 9 12 2.3e-05 0.021 15.7 2.7 1 23 355 377 355 378 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF331-202 - 463 6.8e-29 98.1 95.8 10 12 9.1e-05 0.081 13.8 0.3 1 23 383 405 383 406 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF331-202 - 463 6.8e-29 98.1 95.8 11 12 6.5e-05 0.058 14.3 3.1 2 23 412 433 411 434 0.89 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF331-202 - 463 6.8e-29 98.1 95.8 12 12 0.0063 5.6 8.1 3.7 1 23 439 461 439 462 0.95 C2H2-type zinc finger KRAB PF01352.27 42 ZNF331-202 - 463 2.5e-26 91.0 0.4 1 1 5e-29 4.5e-26 90.2 0.4 1 42 5 46 5 46 0.99 KRAB box zf-C2H2_6 PF13912.6 27 ZNF331-202 - 463 6.8e-26 89.7 107.2 1 12 9.6e-05 0.086 12.9 1.2 2 24 131 153 130 156 0.90 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF331-202 - 463 6.8e-26 89.7 107.2 2 12 2.9e-05 0.026 14.5 1.0 2 24 159 181 159 184 0.91 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF331-202 - 463 6.8e-26 89.7 107.2 3 12 0.00045 0.41 10.7 0.1 2 24 187 209 187 212 0.92 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF331-202 - 463 6.8e-26 89.7 107.2 4 12 4.7e-06 0.0042 17.1 0.6 2 24 215 237 215 240 0.92 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF331-202 - 463 6.8e-26 89.7 107.2 5 12 9.7e-07 0.00087 19.2 0.5 2 25 243 266 242 268 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF331-202 - 463 6.8e-26 89.7 107.2 6 12 0.00052 0.47 10.5 1.0 2 24 271 293 271 296 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF331-202 - 463 6.8e-26 89.7 107.2 7 12 7.9e-05 0.071 13.1 0.7 2 24 299 321 299 324 0.87 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF331-202 - 463 6.8e-26 89.7 107.2 8 12 2.3e-05 0.02 14.9 0.8 2 22 327 347 327 351 0.89 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF331-202 - 463 6.8e-26 89.7 107.2 9 12 0.0004 0.36 10.9 3.9 2 22 355 375 355 379 0.90 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF331-202 - 463 6.8e-26 89.7 107.2 10 12 2.9e-05 0.026 14.5 0.7 2 22 383 403 383 407 0.91 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF331-202 - 463 6.8e-26 89.7 107.2 11 12 0.0002 0.18 11.9 6.8 2 24 411 433 411 435 0.95 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF331-202 - 463 6.8e-26 89.7 107.2 12 12 0.016 14 5.8 4.5 2 24 439 461 438 463 0.84 C2H2-type zinc finger Zn-ribbon_8 PF09723.10 40 ZNF331-202 - 463 1.4e-16 60.3 67.1 1 7 3.9e-05 0.035 14.2 3.9 6 35 131 167 130 170 0.91 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF331-202 - 463 1.4e-16 60.3 67.1 2 7 7.8e-07 0.0007 19.7 1.2 6 38 187 226 186 227 0.89 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF331-202 - 463 1.4e-16 60.3 67.1 3 7 1.4e-05 0.013 15.6 5.0 5 34 242 278 241 280 0.79 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF331-202 - 463 1.4e-16 60.3 67.1 4 7 0.016 14 5.8 0.9 6 15 271 280 269 288 0.93 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF331-202 - 463 1.4e-16 60.3 67.1 5 7 9.9e-07 0.00089 19.3 3.3 6 35 299 335 298 337 0.92 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF331-202 - 463 1.4e-16 60.3 67.1 6 7 0.0012 1.1 9.4 7.7 6 34 355 390 354 393 0.87 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF331-202 - 463 1.4e-16 60.3 67.1 7 7 0.0012 1 9.5 6.5 6 35 411 447 410 451 0.88 Zinc ribbon domain zf-C2H2_jaz PF12171.8 27 ZNF331-202 - 463 1.1e-12 47.9 61.2 1 12 0.00093 0.83 10.0 0.3 2 22 131 151 130 151 0.95 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF331-202 - 463 1.1e-12 47.9 61.2 2 12 0.0013 1.1 9.6 0.5 2 22 159 179 158 179 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF331-202 - 463 1.1e-12 47.9 61.2 3 12 0.46 4.2e+02 1.4 0.1 2 11 187 196 186 206 0.89 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF331-202 - 463 1.1e-12 47.9 61.2 4 12 0.025 22 5.5 0.0 2 22 215 235 214 235 0.90 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF331-202 - 463 1.1e-12 47.9 61.2 5 12 0.0014 1.3 9.4 0.4 2 22 243 263 242 263 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF331-202 - 463 1.1e-12 47.9 61.2 6 12 0.089 80 3.7 0.3 2 21 271 290 270 291 0.82 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF331-202 - 463 1.1e-12 47.9 61.2 7 12 0.00041 0.37 11.1 0.2 2 22 299 319 298 319 0.95 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF331-202 - 463 1.1e-12 47.9 61.2 8 12 0.029 26 5.2 0.0 2 21 327 346 326 347 0.83 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF331-202 - 463 1.1e-12 47.9 61.2 9 12 0.1 93 3.5 1.1 2 21 355 374 354 375 0.79 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF331-202 - 463 1.1e-12 47.9 61.2 10 12 0.007 6.2 7.2 0.1 2 22 383 403 382 403 0.89 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF331-202 - 463 1.1e-12 47.9 61.2 11 12 0.00016 0.14 12.4 1.0 4 24 413 433 410 434 0.95 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF331-202 - 463 1.1e-12 47.9 61.2 12 12 0.023 20 5.6 3.1 2 22 439 459 438 459 0.93 Zinc-finger double-stranded RNA-binding zf-trcl PF13451.6 48 ZNF331-202 - 463 9.8e-07 28.6 59.1 1 11 0.053 47 4.0 6.6 4 42 130 167 127 172 0.81 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF331-202 - 463 9.8e-07 28.6 59.1 2 11 0.0017 1.5 8.8 0.1 3 16 185 198 183 201 0.87 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF331-202 - 463 9.8e-07 28.6 59.1 3 11 0.0099 8.9 6.3 0.2 3 14 213 224 211 225 0.88 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF331-202 - 463 9.8e-07 28.6 59.1 4 11 0.016 14 5.7 0.7 3 14 241 252 240 253 0.87 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF331-202 - 463 9.8e-07 28.6 59.1 5 11 0.0037 3.3 7.7 0.6 3 15 269 281 267 283 0.90 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF331-202 - 463 9.8e-07 28.6 59.1 6 11 0.032 29 4.7 0.1 3 15 297 309 295 312 0.89 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF331-202 - 463 9.8e-07 28.6 59.1 7 11 0.019 17 5.4 0.1 3 16 325 338 323 341 0.84 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF331-202 - 463 9.8e-07 28.6 59.1 8 11 0.034 30 4.6 0.1 3 14 353 364 351 365 0.87 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF331-202 - 463 9.8e-07 28.6 59.1 9 11 0.0027 2.5 8.1 0.1 4 16 382 394 380 397 0.86 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF331-202 - 463 9.8e-07 28.6 59.1 10 11 0.13 1.2e+02 2.7 0.1 3 14 409 420 409 433 0.88 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF331-202 - 463 9.8e-07 28.6 59.1 11 11 0.65 5.8e+02 0.5 1.2 3 12 437 446 435 449 0.84 Probable zinc-ribbon domain # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF331-202.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF331-202.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF331-202.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF331-202.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF331-202.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:04:08 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZNF331-203 - 463 7.4e-94 304.4 104.0 1 13 6.4e-06 0.0058 17.0 2.7 8 25 124 141 120 142 0.86 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF331-203 - 463 7.4e-94 304.4 104.0 2 13 1.9e-11 1.7e-08 34.5 1.5 2 24 146 168 145 169 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF331-203 - 463 7.4e-94 304.4 104.0 3 13 2.3e-11 2.1e-08 34.2 0.6 2 24 174 196 173 197 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF331-203 - 463 7.4e-94 304.4 104.0 4 13 2.9e-11 2.6e-08 33.9 0.4 2 25 202 225 201 226 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF331-203 - 463 7.4e-94 304.4 104.0 5 13 7.5e-11 6.7e-08 32.6 1.0 2 25 230 253 229 254 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF331-203 - 463 7.4e-94 304.4 104.0 6 13 5.8e-10 5.2e-07 29.8 1.4 2 24 258 280 257 282 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF331-203 - 463 7.4e-94 304.4 104.0 7 13 7e-12 6.3e-09 35.9 0.3 2 26 286 310 285 310 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF331-203 - 463 7.4e-94 304.4 104.0 8 13 5.9e-11 5.3e-08 32.9 2.3 2 24 314 336 313 337 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF331-203 - 463 7.4e-94 304.4 104.0 9 13 6.9e-12 6.2e-09 35.9 2.1 1 25 341 365 341 366 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF331-203 - 463 7.4e-94 304.4 104.0 10 13 1.7e-11 1.5e-08 34.6 1.5 1 24 369 392 369 394 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF331-203 - 463 7.4e-94 304.4 104.0 11 13 1.1e-09 9.7e-07 29.0 0.9 1 26 397 422 397 422 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF331-203 - 463 7.4e-94 304.4 104.0 12 13 6.7e-07 0.0006 20.1 3.2 2 26 426 450 425 450 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF331-203 - 463 7.4e-94 304.4 104.0 13 13 1.2 1.1e+03 0.3 1.6 1 10 453 462 453 463 0.86 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZNF331-203 - 463 2.1e-49 163.3 98.9 1 12 3.6e-08 3.2e-05 24.1 0.5 1 23 131 153 131 153 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF331-203 - 463 2.1e-49 163.3 98.9 2 12 0.00013 0.12 12.9 0.5 1 23 159 181 159 181 0.95 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF331-203 - 463 2.1e-49 163.3 98.9 3 12 8e-06 0.0071 16.7 0.1 1 23 187 209 187 209 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF331-203 - 463 2.1e-49 163.3 98.9 4 12 2.9e-08 2.6e-05 24.4 0.6 1 23 215 237 215 237 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF331-203 - 463 2.1e-49 163.3 98.9 5 12 2.1e-08 1.8e-05 24.9 1.1 1 23 243 265 243 265 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF331-203 - 463 2.1e-49 163.3 98.9 6 12 2.7e-05 0.024 15.1 0.7 1 23 271 293 271 293 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF331-203 - 463 2.1e-49 163.3 98.9 7 12 1.4e-07 0.00012 22.3 0.4 1 23 299 321 299 321 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF331-203 - 463 2.1e-49 163.3 98.9 8 12 2.6e-05 0.024 15.1 0.4 1 23 327 349 327 349 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF331-203 - 463 2.1e-49 163.3 98.9 9 12 5.6e-05 0.05 14.1 3.5 1 23 355 377 355 377 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF331-203 - 463 2.1e-49 163.3 98.9 10 12 1.9e-07 0.00017 21.9 0.3 1 23 383 405 383 405 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF331-203 - 463 2.1e-49 163.3 98.9 11 12 2.1e-06 0.0019 18.5 3.7 3 23 413 433 411 433 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF331-203 - 463 2.1e-49 163.3 98.9 12 12 2.6e-06 0.0024 18.2 4.7 1 23 439 461 439 461 0.98 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZNF331-203 - 463 6.8e-29 98.1 95.8 1 12 3.9e-06 0.0035 18.0 0.5 1 23 131 153 131 154 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF331-203 - 463 6.8e-29 98.1 95.8 2 12 0.0024 2.1 9.4 0.6 1 23 159 181 159 182 0.90 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF331-203 - 463 6.8e-29 98.1 95.8 3 12 0.0037 3.3 8.8 0.2 1 23 187 209 187 210 0.89 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF331-203 - 463 6.8e-29 98.1 95.8 4 12 3.9e-05 0.035 15.0 0.4 1 23 215 237 215 238 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF331-203 - 463 6.8e-29 98.1 95.8 5 12 1.2e-06 0.0011 19.6 0.8 1 23 243 265 243 266 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF331-203 - 463 6.8e-29 98.1 95.8 6 12 5.8e-05 0.052 14.4 0.7 1 23 271 293 271 294 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF331-203 - 463 6.8e-29 98.1 95.8 7 12 2.2e-05 0.02 15.7 0.4 1 23 299 321 299 322 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF331-203 - 463 6.8e-29 98.1 95.8 8 12 0.0016 1.5 9.9 0.7 1 23 327 349 327 350 0.91 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF331-203 - 463 6.8e-29 98.1 95.8 9 12 2.3e-05 0.021 15.7 2.7 1 23 355 377 355 378 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF331-203 - 463 6.8e-29 98.1 95.8 10 12 9.1e-05 0.081 13.8 0.3 1 23 383 405 383 406 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF331-203 - 463 6.8e-29 98.1 95.8 11 12 6.5e-05 0.058 14.3 3.1 2 23 412 433 411 434 0.89 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF331-203 - 463 6.8e-29 98.1 95.8 12 12 0.0063 5.6 8.1 3.7 1 23 439 461 439 462 0.95 C2H2-type zinc finger KRAB PF01352.27 42 ZNF331-203 - 463 2.5e-26 91.0 0.4 1 1 5e-29 4.5e-26 90.2 0.4 1 42 5 46 5 46 0.99 KRAB box zf-C2H2_6 PF13912.6 27 ZNF331-203 - 463 6.8e-26 89.7 107.2 1 12 9.6e-05 0.086 12.9 1.2 2 24 131 153 130 156 0.90 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF331-203 - 463 6.8e-26 89.7 107.2 2 12 2.9e-05 0.026 14.5 1.0 2 24 159 181 159 184 0.91 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF331-203 - 463 6.8e-26 89.7 107.2 3 12 0.00045 0.41 10.7 0.1 2 24 187 209 187 212 0.92 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF331-203 - 463 6.8e-26 89.7 107.2 4 12 4.7e-06 0.0042 17.1 0.6 2 24 215 237 215 240 0.92 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF331-203 - 463 6.8e-26 89.7 107.2 5 12 9.7e-07 0.00087 19.2 0.5 2 25 243 266 242 268 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF331-203 - 463 6.8e-26 89.7 107.2 6 12 0.00052 0.47 10.5 1.0 2 24 271 293 271 296 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF331-203 - 463 6.8e-26 89.7 107.2 7 12 7.9e-05 0.071 13.1 0.7 2 24 299 321 299 324 0.87 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF331-203 - 463 6.8e-26 89.7 107.2 8 12 2.3e-05 0.02 14.9 0.8 2 22 327 347 327 351 0.89 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF331-203 - 463 6.8e-26 89.7 107.2 9 12 0.0004 0.36 10.9 3.9 2 22 355 375 355 379 0.90 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF331-203 - 463 6.8e-26 89.7 107.2 10 12 2.9e-05 0.026 14.5 0.7 2 22 383 403 383 407 0.91 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF331-203 - 463 6.8e-26 89.7 107.2 11 12 0.0002 0.18 11.9 6.8 2 24 411 433 411 435 0.95 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF331-203 - 463 6.8e-26 89.7 107.2 12 12 0.016 14 5.8 4.5 2 24 439 461 438 463 0.84 C2H2-type zinc finger Zn-ribbon_8 PF09723.10 40 ZNF331-203 - 463 1.4e-16 60.3 67.1 1 7 3.9e-05 0.035 14.2 3.9 6 35 131 167 130 170 0.91 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF331-203 - 463 1.4e-16 60.3 67.1 2 7 7.8e-07 0.0007 19.7 1.2 6 38 187 226 186 227 0.89 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF331-203 - 463 1.4e-16 60.3 67.1 3 7 1.4e-05 0.013 15.6 5.0 5 34 242 278 241 280 0.79 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF331-203 - 463 1.4e-16 60.3 67.1 4 7 0.016 14 5.8 0.9 6 15 271 280 269 288 0.93 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF331-203 - 463 1.4e-16 60.3 67.1 5 7 9.9e-07 0.00089 19.3 3.3 6 35 299 335 298 337 0.92 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF331-203 - 463 1.4e-16 60.3 67.1 6 7 0.0012 1.1 9.4 7.7 6 34 355 390 354 393 0.87 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF331-203 - 463 1.4e-16 60.3 67.1 7 7 0.0012 1 9.5 6.5 6 35 411 447 410 451 0.88 Zinc ribbon domain zf-C2H2_jaz PF12171.8 27 ZNF331-203 - 463 1.1e-12 47.9 61.2 1 12 0.00093 0.83 10.0 0.3 2 22 131 151 130 151 0.95 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF331-203 - 463 1.1e-12 47.9 61.2 2 12 0.0013 1.1 9.6 0.5 2 22 159 179 158 179 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF331-203 - 463 1.1e-12 47.9 61.2 3 12 0.46 4.2e+02 1.4 0.1 2 11 187 196 186 206 0.89 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF331-203 - 463 1.1e-12 47.9 61.2 4 12 0.025 22 5.5 0.0 2 22 215 235 214 235 0.90 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF331-203 - 463 1.1e-12 47.9 61.2 5 12 0.0014 1.3 9.4 0.4 2 22 243 263 242 263 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF331-203 - 463 1.1e-12 47.9 61.2 6 12 0.089 80 3.7 0.3 2 21 271 290 270 291 0.82 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF331-203 - 463 1.1e-12 47.9 61.2 7 12 0.00041 0.37 11.1 0.2 2 22 299 319 298 319 0.95 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF331-203 - 463 1.1e-12 47.9 61.2 8 12 0.029 26 5.2 0.0 2 21 327 346 326 347 0.83 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF331-203 - 463 1.1e-12 47.9 61.2 9 12 0.1 93 3.5 1.1 2 21 355 374 354 375 0.79 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF331-203 - 463 1.1e-12 47.9 61.2 10 12 0.007 6.2 7.2 0.1 2 22 383 403 382 403 0.89 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF331-203 - 463 1.1e-12 47.9 61.2 11 12 0.00016 0.14 12.4 1.0 4 24 413 433 410 434 0.95 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF331-203 - 463 1.1e-12 47.9 61.2 12 12 0.023 20 5.6 3.1 2 22 439 459 438 459 0.93 Zinc-finger double-stranded RNA-binding zf-trcl PF13451.6 48 ZNF331-203 - 463 9.8e-07 28.6 59.1 1 11 0.053 47 4.0 6.6 4 42 130 167 127 172 0.81 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF331-203 - 463 9.8e-07 28.6 59.1 2 11 0.0017 1.5 8.8 0.1 3 16 185 198 183 201 0.87 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF331-203 - 463 9.8e-07 28.6 59.1 3 11 0.0099 8.9 6.3 0.2 3 14 213 224 211 225 0.88 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF331-203 - 463 9.8e-07 28.6 59.1 4 11 0.016 14 5.7 0.7 3 14 241 252 240 253 0.87 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF331-203 - 463 9.8e-07 28.6 59.1 5 11 0.0037 3.3 7.7 0.6 3 15 269 281 267 283 0.90 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF331-203 - 463 9.8e-07 28.6 59.1 6 11 0.032 29 4.7 0.1 3 15 297 309 295 312 0.89 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF331-203 - 463 9.8e-07 28.6 59.1 7 11 0.019 17 5.4 0.1 3 16 325 338 323 341 0.84 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF331-203 - 463 9.8e-07 28.6 59.1 8 11 0.034 30 4.6 0.1 3 14 353 364 351 365 0.87 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF331-203 - 463 9.8e-07 28.6 59.1 9 11 0.0027 2.5 8.1 0.1 4 16 382 394 380 397 0.86 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF331-203 - 463 9.8e-07 28.6 59.1 10 11 0.13 1.2e+02 2.7 0.1 3 14 409 420 409 433 0.88 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF331-203 - 463 9.8e-07 28.6 59.1 11 11 0.65 5.8e+02 0.5 1.2 3 12 437 446 435 449 0.84 Probable zinc-ribbon domain # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF331-203.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF331-203.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF331-203.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF331-203.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF331-203.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:04:08 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF331-204.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF331-204.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF331-204.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF331-204.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF331-204.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:04:09 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF331-205.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF331-205.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF331-205.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF331-205.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF331-205.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:04:09 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF331-206.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF331-206.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF331-206.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF331-206.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF331-206.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:04:09 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZNF331-207 - 463 7.4e-94 304.4 104.0 1 13 6.4e-06 0.0058 17.0 2.7 8 25 124 141 120 142 0.86 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF331-207 - 463 7.4e-94 304.4 104.0 2 13 1.9e-11 1.7e-08 34.5 1.5 2 24 146 168 145 169 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF331-207 - 463 7.4e-94 304.4 104.0 3 13 2.3e-11 2.1e-08 34.2 0.6 2 24 174 196 173 197 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF331-207 - 463 7.4e-94 304.4 104.0 4 13 2.9e-11 2.6e-08 33.9 0.4 2 25 202 225 201 226 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF331-207 - 463 7.4e-94 304.4 104.0 5 13 7.5e-11 6.7e-08 32.6 1.0 2 25 230 253 229 254 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF331-207 - 463 7.4e-94 304.4 104.0 6 13 5.8e-10 5.2e-07 29.8 1.4 2 24 258 280 257 282 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF331-207 - 463 7.4e-94 304.4 104.0 7 13 7e-12 6.3e-09 35.9 0.3 2 26 286 310 285 310 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF331-207 - 463 7.4e-94 304.4 104.0 8 13 5.9e-11 5.3e-08 32.9 2.3 2 24 314 336 313 337 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF331-207 - 463 7.4e-94 304.4 104.0 9 13 6.9e-12 6.2e-09 35.9 2.1 1 25 341 365 341 366 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF331-207 - 463 7.4e-94 304.4 104.0 10 13 1.7e-11 1.5e-08 34.6 1.5 1 24 369 392 369 394 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF331-207 - 463 7.4e-94 304.4 104.0 11 13 1.1e-09 9.7e-07 29.0 0.9 1 26 397 422 397 422 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF331-207 - 463 7.4e-94 304.4 104.0 12 13 6.7e-07 0.0006 20.1 3.2 2 26 426 450 425 450 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF331-207 - 463 7.4e-94 304.4 104.0 13 13 1.2 1.1e+03 0.3 1.6 1 10 453 462 453 463 0.86 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZNF331-207 - 463 2.1e-49 163.3 98.9 1 12 3.6e-08 3.2e-05 24.1 0.5 1 23 131 153 131 153 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF331-207 - 463 2.1e-49 163.3 98.9 2 12 0.00013 0.12 12.9 0.5 1 23 159 181 159 181 0.95 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF331-207 - 463 2.1e-49 163.3 98.9 3 12 8e-06 0.0071 16.7 0.1 1 23 187 209 187 209 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF331-207 - 463 2.1e-49 163.3 98.9 4 12 2.9e-08 2.6e-05 24.4 0.6 1 23 215 237 215 237 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF331-207 - 463 2.1e-49 163.3 98.9 5 12 2.1e-08 1.8e-05 24.9 1.1 1 23 243 265 243 265 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF331-207 - 463 2.1e-49 163.3 98.9 6 12 2.7e-05 0.024 15.1 0.7 1 23 271 293 271 293 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF331-207 - 463 2.1e-49 163.3 98.9 7 12 1.4e-07 0.00012 22.3 0.4 1 23 299 321 299 321 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF331-207 - 463 2.1e-49 163.3 98.9 8 12 2.6e-05 0.024 15.1 0.4 1 23 327 349 327 349 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF331-207 - 463 2.1e-49 163.3 98.9 9 12 5.6e-05 0.05 14.1 3.5 1 23 355 377 355 377 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF331-207 - 463 2.1e-49 163.3 98.9 10 12 1.9e-07 0.00017 21.9 0.3 1 23 383 405 383 405 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF331-207 - 463 2.1e-49 163.3 98.9 11 12 2.1e-06 0.0019 18.5 3.7 3 23 413 433 411 433 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF331-207 - 463 2.1e-49 163.3 98.9 12 12 2.6e-06 0.0024 18.2 4.7 1 23 439 461 439 461 0.98 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZNF331-207 - 463 6.8e-29 98.1 95.8 1 12 3.9e-06 0.0035 18.0 0.5 1 23 131 153 131 154 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF331-207 - 463 6.8e-29 98.1 95.8 2 12 0.0024 2.1 9.4 0.6 1 23 159 181 159 182 0.90 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF331-207 - 463 6.8e-29 98.1 95.8 3 12 0.0037 3.3 8.8 0.2 1 23 187 209 187 210 0.89 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF331-207 - 463 6.8e-29 98.1 95.8 4 12 3.9e-05 0.035 15.0 0.4 1 23 215 237 215 238 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF331-207 - 463 6.8e-29 98.1 95.8 5 12 1.2e-06 0.0011 19.6 0.8 1 23 243 265 243 266 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF331-207 - 463 6.8e-29 98.1 95.8 6 12 5.8e-05 0.052 14.4 0.7 1 23 271 293 271 294 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF331-207 - 463 6.8e-29 98.1 95.8 7 12 2.2e-05 0.02 15.7 0.4 1 23 299 321 299 322 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF331-207 - 463 6.8e-29 98.1 95.8 8 12 0.0016 1.5 9.9 0.7 1 23 327 349 327 350 0.91 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF331-207 - 463 6.8e-29 98.1 95.8 9 12 2.3e-05 0.021 15.7 2.7 1 23 355 377 355 378 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF331-207 - 463 6.8e-29 98.1 95.8 10 12 9.1e-05 0.081 13.8 0.3 1 23 383 405 383 406 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF331-207 - 463 6.8e-29 98.1 95.8 11 12 6.5e-05 0.058 14.3 3.1 2 23 412 433 411 434 0.89 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF331-207 - 463 6.8e-29 98.1 95.8 12 12 0.0063 5.6 8.1 3.7 1 23 439 461 439 462 0.95 C2H2-type zinc finger KRAB PF01352.27 42 ZNF331-207 - 463 2.5e-26 91.0 0.4 1 1 5e-29 4.5e-26 90.2 0.4 1 42 5 46 5 46 0.99 KRAB box zf-C2H2_6 PF13912.6 27 ZNF331-207 - 463 6.8e-26 89.7 107.2 1 12 9.6e-05 0.086 12.9 1.2 2 24 131 153 130 156 0.90 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF331-207 - 463 6.8e-26 89.7 107.2 2 12 2.9e-05 0.026 14.5 1.0 2 24 159 181 159 184 0.91 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF331-207 - 463 6.8e-26 89.7 107.2 3 12 0.00045 0.41 10.7 0.1 2 24 187 209 187 212 0.92 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF331-207 - 463 6.8e-26 89.7 107.2 4 12 4.7e-06 0.0042 17.1 0.6 2 24 215 237 215 240 0.92 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF331-207 - 463 6.8e-26 89.7 107.2 5 12 9.7e-07 0.00087 19.2 0.5 2 25 243 266 242 268 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF331-207 - 463 6.8e-26 89.7 107.2 6 12 0.00052 0.47 10.5 1.0 2 24 271 293 271 296 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF331-207 - 463 6.8e-26 89.7 107.2 7 12 7.9e-05 0.071 13.1 0.7 2 24 299 321 299 324 0.87 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF331-207 - 463 6.8e-26 89.7 107.2 8 12 2.3e-05 0.02 14.9 0.8 2 22 327 347 327 351 0.89 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF331-207 - 463 6.8e-26 89.7 107.2 9 12 0.0004 0.36 10.9 3.9 2 22 355 375 355 379 0.90 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF331-207 - 463 6.8e-26 89.7 107.2 10 12 2.9e-05 0.026 14.5 0.7 2 22 383 403 383 407 0.91 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF331-207 - 463 6.8e-26 89.7 107.2 11 12 0.0002 0.18 11.9 6.8 2 24 411 433 411 435 0.95 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF331-207 - 463 6.8e-26 89.7 107.2 12 12 0.016 14 5.8 4.5 2 24 439 461 438 463 0.84 C2H2-type zinc finger Zn-ribbon_8 PF09723.10 40 ZNF331-207 - 463 1.4e-16 60.3 67.1 1 7 3.9e-05 0.035 14.2 3.9 6 35 131 167 130 170 0.91 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF331-207 - 463 1.4e-16 60.3 67.1 2 7 7.8e-07 0.0007 19.7 1.2 6 38 187 226 186 227 0.89 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF331-207 - 463 1.4e-16 60.3 67.1 3 7 1.4e-05 0.013 15.6 5.0 5 34 242 278 241 280 0.79 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF331-207 - 463 1.4e-16 60.3 67.1 4 7 0.016 14 5.8 0.9 6 15 271 280 269 288 0.93 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF331-207 - 463 1.4e-16 60.3 67.1 5 7 9.9e-07 0.00089 19.3 3.3 6 35 299 335 298 337 0.92 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF331-207 - 463 1.4e-16 60.3 67.1 6 7 0.0012 1.1 9.4 7.7 6 34 355 390 354 393 0.87 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF331-207 - 463 1.4e-16 60.3 67.1 7 7 0.0012 1 9.5 6.5 6 35 411 447 410 451 0.88 Zinc ribbon domain zf-C2H2_jaz PF12171.8 27 ZNF331-207 - 463 1.1e-12 47.9 61.2 1 12 0.00093 0.83 10.0 0.3 2 22 131 151 130 151 0.95 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF331-207 - 463 1.1e-12 47.9 61.2 2 12 0.0013 1.1 9.6 0.5 2 22 159 179 158 179 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF331-207 - 463 1.1e-12 47.9 61.2 3 12 0.46 4.2e+02 1.4 0.1 2 11 187 196 186 206 0.89 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF331-207 - 463 1.1e-12 47.9 61.2 4 12 0.025 22 5.5 0.0 2 22 215 235 214 235 0.90 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF331-207 - 463 1.1e-12 47.9 61.2 5 12 0.0014 1.3 9.4 0.4 2 22 243 263 242 263 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF331-207 - 463 1.1e-12 47.9 61.2 6 12 0.089 80 3.7 0.3 2 21 271 290 270 291 0.82 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF331-207 - 463 1.1e-12 47.9 61.2 7 12 0.00041 0.37 11.1 0.2 2 22 299 319 298 319 0.95 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF331-207 - 463 1.1e-12 47.9 61.2 8 12 0.029 26 5.2 0.0 2 21 327 346 326 347 0.83 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF331-207 - 463 1.1e-12 47.9 61.2 9 12 0.1 93 3.5 1.1 2 21 355 374 354 375 0.79 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF331-207 - 463 1.1e-12 47.9 61.2 10 12 0.007 6.2 7.2 0.1 2 22 383 403 382 403 0.89 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF331-207 - 463 1.1e-12 47.9 61.2 11 12 0.00016 0.14 12.4 1.0 4 24 413 433 410 434 0.95 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF331-207 - 463 1.1e-12 47.9 61.2 12 12 0.023 20 5.6 3.1 2 22 439 459 438 459 0.93 Zinc-finger double-stranded RNA-binding zf-trcl PF13451.6 48 ZNF331-207 - 463 9.8e-07 28.6 59.1 1 11 0.053 47 4.0 6.6 4 42 130 167 127 172 0.81 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF331-207 - 463 9.8e-07 28.6 59.1 2 11 0.0017 1.5 8.8 0.1 3 16 185 198 183 201 0.87 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF331-207 - 463 9.8e-07 28.6 59.1 3 11 0.0099 8.9 6.3 0.2 3 14 213 224 211 225 0.88 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF331-207 - 463 9.8e-07 28.6 59.1 4 11 0.016 14 5.7 0.7 3 14 241 252 240 253 0.87 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF331-207 - 463 9.8e-07 28.6 59.1 5 11 0.0037 3.3 7.7 0.6 3 15 269 281 267 283 0.90 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF331-207 - 463 9.8e-07 28.6 59.1 6 11 0.032 29 4.7 0.1 3 15 297 309 295 312 0.89 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF331-207 - 463 9.8e-07 28.6 59.1 7 11 0.019 17 5.4 0.1 3 16 325 338 323 341 0.84 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF331-207 - 463 9.8e-07 28.6 59.1 8 11 0.034 30 4.6 0.1 3 14 353 364 351 365 0.87 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF331-207 - 463 9.8e-07 28.6 59.1 9 11 0.0027 2.5 8.1 0.1 4 16 382 394 380 397 0.86 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF331-207 - 463 9.8e-07 28.6 59.1 10 11 0.13 1.2e+02 2.7 0.1 3 14 409 420 409 433 0.88 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF331-207 - 463 9.8e-07 28.6 59.1 11 11 0.65 5.8e+02 0.5 1.2 3 12 437 446 435 449 0.84 Probable zinc-ribbon domain # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF331-207.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF331-207.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF331-207.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF331-207.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF331-207.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:04:10 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF331-208.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF331-208.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF331-208.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF331-208.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF331-208.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:04:10 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF331-209.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF331-209.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF331-209.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF331-209.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF331-209.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:04:11 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF331-210.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF331-210.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF331-210.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF331-210.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF331-210.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:04:11 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF331-211.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF331-211.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF331-211.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF331-211.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF331-211.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:04:11 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF331-212.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF331-212.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF331-212.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF331-212.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF331-212.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:04:12 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZNF331-214 - 463 7.4e-94 304.4 104.0 1 13 6.4e-06 0.0058 17.0 2.7 8 25 124 141 120 142 0.86 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF331-214 - 463 7.4e-94 304.4 104.0 2 13 1.9e-11 1.7e-08 34.5 1.5 2 24 146 168 145 169 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF331-214 - 463 7.4e-94 304.4 104.0 3 13 2.3e-11 2.1e-08 34.2 0.6 2 24 174 196 173 197 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF331-214 - 463 7.4e-94 304.4 104.0 4 13 2.9e-11 2.6e-08 33.9 0.4 2 25 202 225 201 226 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF331-214 - 463 7.4e-94 304.4 104.0 5 13 7.5e-11 6.7e-08 32.6 1.0 2 25 230 253 229 254 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF331-214 - 463 7.4e-94 304.4 104.0 6 13 5.8e-10 5.2e-07 29.8 1.4 2 24 258 280 257 282 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF331-214 - 463 7.4e-94 304.4 104.0 7 13 7e-12 6.3e-09 35.9 0.3 2 26 286 310 285 310 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF331-214 - 463 7.4e-94 304.4 104.0 8 13 5.9e-11 5.3e-08 32.9 2.3 2 24 314 336 313 337 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF331-214 - 463 7.4e-94 304.4 104.0 9 13 6.9e-12 6.2e-09 35.9 2.1 1 25 341 365 341 366 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF331-214 - 463 7.4e-94 304.4 104.0 10 13 1.7e-11 1.5e-08 34.6 1.5 1 24 369 392 369 394 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF331-214 - 463 7.4e-94 304.4 104.0 11 13 1.1e-09 9.7e-07 29.0 0.9 1 26 397 422 397 422 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF331-214 - 463 7.4e-94 304.4 104.0 12 13 6.7e-07 0.0006 20.1 3.2 2 26 426 450 425 450 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF331-214 - 463 7.4e-94 304.4 104.0 13 13 1.2 1.1e+03 0.3 1.6 1 10 453 462 453 463 0.86 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZNF331-214 - 463 2.1e-49 163.3 98.9 1 12 3.6e-08 3.2e-05 24.1 0.5 1 23 131 153 131 153 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF331-214 - 463 2.1e-49 163.3 98.9 2 12 0.00013 0.12 12.9 0.5 1 23 159 181 159 181 0.95 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF331-214 - 463 2.1e-49 163.3 98.9 3 12 8e-06 0.0071 16.7 0.1 1 23 187 209 187 209 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF331-214 - 463 2.1e-49 163.3 98.9 4 12 2.9e-08 2.6e-05 24.4 0.6 1 23 215 237 215 237 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF331-214 - 463 2.1e-49 163.3 98.9 5 12 2.1e-08 1.8e-05 24.9 1.1 1 23 243 265 243 265 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF331-214 - 463 2.1e-49 163.3 98.9 6 12 2.7e-05 0.024 15.1 0.7 1 23 271 293 271 293 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF331-214 - 463 2.1e-49 163.3 98.9 7 12 1.4e-07 0.00012 22.3 0.4 1 23 299 321 299 321 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF331-214 - 463 2.1e-49 163.3 98.9 8 12 2.6e-05 0.024 15.1 0.4 1 23 327 349 327 349 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF331-214 - 463 2.1e-49 163.3 98.9 9 12 5.6e-05 0.05 14.1 3.5 1 23 355 377 355 377 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF331-214 - 463 2.1e-49 163.3 98.9 10 12 1.9e-07 0.00017 21.9 0.3 1 23 383 405 383 405 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF331-214 - 463 2.1e-49 163.3 98.9 11 12 2.1e-06 0.0019 18.5 3.7 3 23 413 433 411 433 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF331-214 - 463 2.1e-49 163.3 98.9 12 12 2.6e-06 0.0024 18.2 4.7 1 23 439 461 439 461 0.98 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZNF331-214 - 463 6.8e-29 98.1 95.8 1 12 3.9e-06 0.0035 18.0 0.5 1 23 131 153 131 154 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF331-214 - 463 6.8e-29 98.1 95.8 2 12 0.0024 2.1 9.4 0.6 1 23 159 181 159 182 0.90 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF331-214 - 463 6.8e-29 98.1 95.8 3 12 0.0037 3.3 8.8 0.2 1 23 187 209 187 210 0.89 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF331-214 - 463 6.8e-29 98.1 95.8 4 12 3.9e-05 0.035 15.0 0.4 1 23 215 237 215 238 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF331-214 - 463 6.8e-29 98.1 95.8 5 12 1.2e-06 0.0011 19.6 0.8 1 23 243 265 243 266 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF331-214 - 463 6.8e-29 98.1 95.8 6 12 5.8e-05 0.052 14.4 0.7 1 23 271 293 271 294 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF331-214 - 463 6.8e-29 98.1 95.8 7 12 2.2e-05 0.02 15.7 0.4 1 23 299 321 299 322 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF331-214 - 463 6.8e-29 98.1 95.8 8 12 0.0016 1.5 9.9 0.7 1 23 327 349 327 350 0.91 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF331-214 - 463 6.8e-29 98.1 95.8 9 12 2.3e-05 0.021 15.7 2.7 1 23 355 377 355 378 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF331-214 - 463 6.8e-29 98.1 95.8 10 12 9.1e-05 0.081 13.8 0.3 1 23 383 405 383 406 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF331-214 - 463 6.8e-29 98.1 95.8 11 12 6.5e-05 0.058 14.3 3.1 2 23 412 433 411 434 0.89 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF331-214 - 463 6.8e-29 98.1 95.8 12 12 0.0063 5.6 8.1 3.7 1 23 439 461 439 462 0.95 C2H2-type zinc finger KRAB PF01352.27 42 ZNF331-214 - 463 2.5e-26 91.0 0.4 1 1 5e-29 4.5e-26 90.2 0.4 1 42 5 46 5 46 0.99 KRAB box zf-C2H2_6 PF13912.6 27 ZNF331-214 - 463 6.8e-26 89.7 107.2 1 12 9.6e-05 0.086 12.9 1.2 2 24 131 153 130 156 0.90 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF331-214 - 463 6.8e-26 89.7 107.2 2 12 2.9e-05 0.026 14.5 1.0 2 24 159 181 159 184 0.91 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF331-214 - 463 6.8e-26 89.7 107.2 3 12 0.00045 0.41 10.7 0.1 2 24 187 209 187 212 0.92 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF331-214 - 463 6.8e-26 89.7 107.2 4 12 4.7e-06 0.0042 17.1 0.6 2 24 215 237 215 240 0.92 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF331-214 - 463 6.8e-26 89.7 107.2 5 12 9.7e-07 0.00087 19.2 0.5 2 25 243 266 242 268 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF331-214 - 463 6.8e-26 89.7 107.2 6 12 0.00052 0.47 10.5 1.0 2 24 271 293 271 296 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF331-214 - 463 6.8e-26 89.7 107.2 7 12 7.9e-05 0.071 13.1 0.7 2 24 299 321 299 324 0.87 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF331-214 - 463 6.8e-26 89.7 107.2 8 12 2.3e-05 0.02 14.9 0.8 2 22 327 347 327 351 0.89 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF331-214 - 463 6.8e-26 89.7 107.2 9 12 0.0004 0.36 10.9 3.9 2 22 355 375 355 379 0.90 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF331-214 - 463 6.8e-26 89.7 107.2 10 12 2.9e-05 0.026 14.5 0.7 2 22 383 403 383 407 0.91 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF331-214 - 463 6.8e-26 89.7 107.2 11 12 0.0002 0.18 11.9 6.8 2 24 411 433 411 435 0.95 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF331-214 - 463 6.8e-26 89.7 107.2 12 12 0.016 14 5.8 4.5 2 24 439 461 438 463 0.84 C2H2-type zinc finger Zn-ribbon_8 PF09723.10 40 ZNF331-214 - 463 1.4e-16 60.3 67.1 1 7 3.9e-05 0.035 14.2 3.9 6 35 131 167 130 170 0.91 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF331-214 - 463 1.4e-16 60.3 67.1 2 7 7.8e-07 0.0007 19.7 1.2 6 38 187 226 186 227 0.89 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF331-214 - 463 1.4e-16 60.3 67.1 3 7 1.4e-05 0.013 15.6 5.0 5 34 242 278 241 280 0.79 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF331-214 - 463 1.4e-16 60.3 67.1 4 7 0.016 14 5.8 0.9 6 15 271 280 269 288 0.93 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF331-214 - 463 1.4e-16 60.3 67.1 5 7 9.9e-07 0.00089 19.3 3.3 6 35 299 335 298 337 0.92 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF331-214 - 463 1.4e-16 60.3 67.1 6 7 0.0012 1.1 9.4 7.7 6 34 355 390 354 393 0.87 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF331-214 - 463 1.4e-16 60.3 67.1 7 7 0.0012 1 9.5 6.5 6 35 411 447 410 451 0.88 Zinc ribbon domain zf-C2H2_jaz PF12171.8 27 ZNF331-214 - 463 1.1e-12 47.9 61.2 1 12 0.00093 0.83 10.0 0.3 2 22 131 151 130 151 0.95 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF331-214 - 463 1.1e-12 47.9 61.2 2 12 0.0013 1.1 9.6 0.5 2 22 159 179 158 179 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF331-214 - 463 1.1e-12 47.9 61.2 3 12 0.46 4.2e+02 1.4 0.1 2 11 187 196 186 206 0.89 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF331-214 - 463 1.1e-12 47.9 61.2 4 12 0.025 22 5.5 0.0 2 22 215 235 214 235 0.90 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF331-214 - 463 1.1e-12 47.9 61.2 5 12 0.0014 1.3 9.4 0.4 2 22 243 263 242 263 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF331-214 - 463 1.1e-12 47.9 61.2 6 12 0.089 80 3.7 0.3 2 21 271 290 270 291 0.82 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF331-214 - 463 1.1e-12 47.9 61.2 7 12 0.00041 0.37 11.1 0.2 2 22 299 319 298 319 0.95 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF331-214 - 463 1.1e-12 47.9 61.2 8 12 0.029 26 5.2 0.0 2 21 327 346 326 347 0.83 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF331-214 - 463 1.1e-12 47.9 61.2 9 12 0.1 93 3.5 1.1 2 21 355 374 354 375 0.79 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF331-214 - 463 1.1e-12 47.9 61.2 10 12 0.007 6.2 7.2 0.1 2 22 383 403 382 403 0.89 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF331-214 - 463 1.1e-12 47.9 61.2 11 12 0.00016 0.14 12.4 1.0 4 24 413 433 410 434 0.95 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF331-214 - 463 1.1e-12 47.9 61.2 12 12 0.023 20 5.6 3.1 2 22 439 459 438 459 0.93 Zinc-finger double-stranded RNA-binding zf-trcl PF13451.6 48 ZNF331-214 - 463 9.8e-07 28.6 59.1 1 11 0.053 47 4.0 6.6 4 42 130 167 127 172 0.81 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF331-214 - 463 9.8e-07 28.6 59.1 2 11 0.0017 1.5 8.8 0.1 3 16 185 198 183 201 0.87 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF331-214 - 463 9.8e-07 28.6 59.1 3 11 0.0099 8.9 6.3 0.2 3 14 213 224 211 225 0.88 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF331-214 - 463 9.8e-07 28.6 59.1 4 11 0.016 14 5.7 0.7 3 14 241 252 240 253 0.87 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF331-214 - 463 9.8e-07 28.6 59.1 5 11 0.0037 3.3 7.7 0.6 3 15 269 281 267 283 0.90 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF331-214 - 463 9.8e-07 28.6 59.1 6 11 0.032 29 4.7 0.1 3 15 297 309 295 312 0.89 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF331-214 - 463 9.8e-07 28.6 59.1 7 11 0.019 17 5.4 0.1 3 16 325 338 323 341 0.84 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF331-214 - 463 9.8e-07 28.6 59.1 8 11 0.034 30 4.6 0.1 3 14 353 364 351 365 0.87 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF331-214 - 463 9.8e-07 28.6 59.1 9 11 0.0027 2.5 8.1 0.1 4 16 382 394 380 397 0.86 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF331-214 - 463 9.8e-07 28.6 59.1 10 11 0.13 1.2e+02 2.7 0.1 3 14 409 420 409 433 0.88 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF331-214 - 463 9.8e-07 28.6 59.1 11 11 0.65 5.8e+02 0.5 1.2 3 12 437 446 435 449 0.84 Probable zinc-ribbon domain # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF331-214.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF331-214.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF331-214.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF331-214.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF331-214.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:04:12 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF331-215.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF331-215.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF331-215.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF331-215.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF331-215.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:04:12 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZNF331-216 - 463 7.4e-94 304.4 104.0 1 13 6.4e-06 0.0058 17.0 2.7 8 25 124 141 120 142 0.86 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF331-216 - 463 7.4e-94 304.4 104.0 2 13 1.9e-11 1.7e-08 34.5 1.5 2 24 146 168 145 169 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF331-216 - 463 7.4e-94 304.4 104.0 3 13 2.3e-11 2.1e-08 34.2 0.6 2 24 174 196 173 197 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF331-216 - 463 7.4e-94 304.4 104.0 4 13 2.9e-11 2.6e-08 33.9 0.4 2 25 202 225 201 226 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF331-216 - 463 7.4e-94 304.4 104.0 5 13 7.5e-11 6.7e-08 32.6 1.0 2 25 230 253 229 254 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF331-216 - 463 7.4e-94 304.4 104.0 6 13 5.8e-10 5.2e-07 29.8 1.4 2 24 258 280 257 282 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF331-216 - 463 7.4e-94 304.4 104.0 7 13 7e-12 6.3e-09 35.9 0.3 2 26 286 310 285 310 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF331-216 - 463 7.4e-94 304.4 104.0 8 13 5.9e-11 5.3e-08 32.9 2.3 2 24 314 336 313 337 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF331-216 - 463 7.4e-94 304.4 104.0 9 13 6.9e-12 6.2e-09 35.9 2.1 1 25 341 365 341 366 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF331-216 - 463 7.4e-94 304.4 104.0 10 13 1.7e-11 1.5e-08 34.6 1.5 1 24 369 392 369 394 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF331-216 - 463 7.4e-94 304.4 104.0 11 13 1.1e-09 9.7e-07 29.0 0.9 1 26 397 422 397 422 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF331-216 - 463 7.4e-94 304.4 104.0 12 13 6.7e-07 0.0006 20.1 3.2 2 26 426 450 425 450 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF331-216 - 463 7.4e-94 304.4 104.0 13 13 1.2 1.1e+03 0.3 1.6 1 10 453 462 453 463 0.86 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZNF331-216 - 463 2.1e-49 163.3 98.9 1 12 3.6e-08 3.2e-05 24.1 0.5 1 23 131 153 131 153 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF331-216 - 463 2.1e-49 163.3 98.9 2 12 0.00013 0.12 12.9 0.5 1 23 159 181 159 181 0.95 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF331-216 - 463 2.1e-49 163.3 98.9 3 12 8e-06 0.0071 16.7 0.1 1 23 187 209 187 209 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF331-216 - 463 2.1e-49 163.3 98.9 4 12 2.9e-08 2.6e-05 24.4 0.6 1 23 215 237 215 237 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF331-216 - 463 2.1e-49 163.3 98.9 5 12 2.1e-08 1.8e-05 24.9 1.1 1 23 243 265 243 265 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF331-216 - 463 2.1e-49 163.3 98.9 6 12 2.7e-05 0.024 15.1 0.7 1 23 271 293 271 293 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF331-216 - 463 2.1e-49 163.3 98.9 7 12 1.4e-07 0.00012 22.3 0.4 1 23 299 321 299 321 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF331-216 - 463 2.1e-49 163.3 98.9 8 12 2.6e-05 0.024 15.1 0.4 1 23 327 349 327 349 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF331-216 - 463 2.1e-49 163.3 98.9 9 12 5.6e-05 0.05 14.1 3.5 1 23 355 377 355 377 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF331-216 - 463 2.1e-49 163.3 98.9 10 12 1.9e-07 0.00017 21.9 0.3 1 23 383 405 383 405 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF331-216 - 463 2.1e-49 163.3 98.9 11 12 2.1e-06 0.0019 18.5 3.7 3 23 413 433 411 433 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF331-216 - 463 2.1e-49 163.3 98.9 12 12 2.6e-06 0.0024 18.2 4.7 1 23 439 461 439 461 0.98 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZNF331-216 - 463 6.8e-29 98.1 95.8 1 12 3.9e-06 0.0035 18.0 0.5 1 23 131 153 131 154 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF331-216 - 463 6.8e-29 98.1 95.8 2 12 0.0024 2.1 9.4 0.6 1 23 159 181 159 182 0.90 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF331-216 - 463 6.8e-29 98.1 95.8 3 12 0.0037 3.3 8.8 0.2 1 23 187 209 187 210 0.89 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF331-216 - 463 6.8e-29 98.1 95.8 4 12 3.9e-05 0.035 15.0 0.4 1 23 215 237 215 238 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF331-216 - 463 6.8e-29 98.1 95.8 5 12 1.2e-06 0.0011 19.6 0.8 1 23 243 265 243 266 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF331-216 - 463 6.8e-29 98.1 95.8 6 12 5.8e-05 0.052 14.4 0.7 1 23 271 293 271 294 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF331-216 - 463 6.8e-29 98.1 95.8 7 12 2.2e-05 0.02 15.7 0.4 1 23 299 321 299 322 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF331-216 - 463 6.8e-29 98.1 95.8 8 12 0.0016 1.5 9.9 0.7 1 23 327 349 327 350 0.91 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF331-216 - 463 6.8e-29 98.1 95.8 9 12 2.3e-05 0.021 15.7 2.7 1 23 355 377 355 378 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF331-216 - 463 6.8e-29 98.1 95.8 10 12 9.1e-05 0.081 13.8 0.3 1 23 383 405 383 406 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF331-216 - 463 6.8e-29 98.1 95.8 11 12 6.5e-05 0.058 14.3 3.1 2 23 412 433 411 434 0.89 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF331-216 - 463 6.8e-29 98.1 95.8 12 12 0.0063 5.6 8.1 3.7 1 23 439 461 439 462 0.95 C2H2-type zinc finger KRAB PF01352.27 42 ZNF331-216 - 463 2.5e-26 91.0 0.4 1 1 5e-29 4.5e-26 90.2 0.4 1 42 5 46 5 46 0.99 KRAB box zf-C2H2_6 PF13912.6 27 ZNF331-216 - 463 6.8e-26 89.7 107.2 1 12 9.6e-05 0.086 12.9 1.2 2 24 131 153 130 156 0.90 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF331-216 - 463 6.8e-26 89.7 107.2 2 12 2.9e-05 0.026 14.5 1.0 2 24 159 181 159 184 0.91 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF331-216 - 463 6.8e-26 89.7 107.2 3 12 0.00045 0.41 10.7 0.1 2 24 187 209 187 212 0.92 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF331-216 - 463 6.8e-26 89.7 107.2 4 12 4.7e-06 0.0042 17.1 0.6 2 24 215 237 215 240 0.92 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF331-216 - 463 6.8e-26 89.7 107.2 5 12 9.7e-07 0.00087 19.2 0.5 2 25 243 266 242 268 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF331-216 - 463 6.8e-26 89.7 107.2 6 12 0.00052 0.47 10.5 1.0 2 24 271 293 271 296 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF331-216 - 463 6.8e-26 89.7 107.2 7 12 7.9e-05 0.071 13.1 0.7 2 24 299 321 299 324 0.87 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF331-216 - 463 6.8e-26 89.7 107.2 8 12 2.3e-05 0.02 14.9 0.8 2 22 327 347 327 351 0.89 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF331-216 - 463 6.8e-26 89.7 107.2 9 12 0.0004 0.36 10.9 3.9 2 22 355 375 355 379 0.90 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF331-216 - 463 6.8e-26 89.7 107.2 10 12 2.9e-05 0.026 14.5 0.7 2 22 383 403 383 407 0.91 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF331-216 - 463 6.8e-26 89.7 107.2 11 12 0.0002 0.18 11.9 6.8 2 24 411 433 411 435 0.95 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF331-216 - 463 6.8e-26 89.7 107.2 12 12 0.016 14 5.8 4.5 2 24 439 461 438 463 0.84 C2H2-type zinc finger Zn-ribbon_8 PF09723.10 40 ZNF331-216 - 463 1.4e-16 60.3 67.1 1 7 3.9e-05 0.035 14.2 3.9 6 35 131 167 130 170 0.91 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF331-216 - 463 1.4e-16 60.3 67.1 2 7 7.8e-07 0.0007 19.7 1.2 6 38 187 226 186 227 0.89 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF331-216 - 463 1.4e-16 60.3 67.1 3 7 1.4e-05 0.013 15.6 5.0 5 34 242 278 241 280 0.79 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF331-216 - 463 1.4e-16 60.3 67.1 4 7 0.016 14 5.8 0.9 6 15 271 280 269 288 0.93 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF331-216 - 463 1.4e-16 60.3 67.1 5 7 9.9e-07 0.00089 19.3 3.3 6 35 299 335 298 337 0.92 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF331-216 - 463 1.4e-16 60.3 67.1 6 7 0.0012 1.1 9.4 7.7 6 34 355 390 354 393 0.87 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF331-216 - 463 1.4e-16 60.3 67.1 7 7 0.0012 1 9.5 6.5 6 35 411 447 410 451 0.88 Zinc ribbon domain zf-C2H2_jaz PF12171.8 27 ZNF331-216 - 463 1.1e-12 47.9 61.2 1 12 0.00093 0.83 10.0 0.3 2 22 131 151 130 151 0.95 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF331-216 - 463 1.1e-12 47.9 61.2 2 12 0.0013 1.1 9.6 0.5 2 22 159 179 158 179 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF331-216 - 463 1.1e-12 47.9 61.2 3 12 0.46 4.2e+02 1.4 0.1 2 11 187 196 186 206 0.89 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF331-216 - 463 1.1e-12 47.9 61.2 4 12 0.025 22 5.5 0.0 2 22 215 235 214 235 0.90 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF331-216 - 463 1.1e-12 47.9 61.2 5 12 0.0014 1.3 9.4 0.4 2 22 243 263 242 263 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF331-216 - 463 1.1e-12 47.9 61.2 6 12 0.089 80 3.7 0.3 2 21 271 290 270 291 0.82 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF331-216 - 463 1.1e-12 47.9 61.2 7 12 0.00041 0.37 11.1 0.2 2 22 299 319 298 319 0.95 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF331-216 - 463 1.1e-12 47.9 61.2 8 12 0.029 26 5.2 0.0 2 21 327 346 326 347 0.83 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF331-216 - 463 1.1e-12 47.9 61.2 9 12 0.1 93 3.5 1.1 2 21 355 374 354 375 0.79 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF331-216 - 463 1.1e-12 47.9 61.2 10 12 0.007 6.2 7.2 0.1 2 22 383 403 382 403 0.89 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF331-216 - 463 1.1e-12 47.9 61.2 11 12 0.00016 0.14 12.4 1.0 4 24 413 433 410 434 0.95 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF331-216 - 463 1.1e-12 47.9 61.2 12 12 0.023 20 5.6 3.1 2 22 439 459 438 459 0.93 Zinc-finger double-stranded RNA-binding zf-trcl PF13451.6 48 ZNF331-216 - 463 9.8e-07 28.6 59.1 1 11 0.053 47 4.0 6.6 4 42 130 167 127 172 0.81 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF331-216 - 463 9.8e-07 28.6 59.1 2 11 0.0017 1.5 8.8 0.1 3 16 185 198 183 201 0.87 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF331-216 - 463 9.8e-07 28.6 59.1 3 11 0.0099 8.9 6.3 0.2 3 14 213 224 211 225 0.88 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF331-216 - 463 9.8e-07 28.6 59.1 4 11 0.016 14 5.7 0.7 3 14 241 252 240 253 0.87 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF331-216 - 463 9.8e-07 28.6 59.1 5 11 0.0037 3.3 7.7 0.6 3 15 269 281 267 283 0.90 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF331-216 - 463 9.8e-07 28.6 59.1 6 11 0.032 29 4.7 0.1 3 15 297 309 295 312 0.89 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF331-216 - 463 9.8e-07 28.6 59.1 7 11 0.019 17 5.4 0.1 3 16 325 338 323 341 0.84 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF331-216 - 463 9.8e-07 28.6 59.1 8 11 0.034 30 4.6 0.1 3 14 353 364 351 365 0.87 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF331-216 - 463 9.8e-07 28.6 59.1 9 11 0.0027 2.5 8.1 0.1 4 16 382 394 380 397 0.86 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF331-216 - 463 9.8e-07 28.6 59.1 10 11 0.13 1.2e+02 2.7 0.1 3 14 409 420 409 433 0.88 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF331-216 - 463 9.8e-07 28.6 59.1 11 11 0.65 5.8e+02 0.5 1.2 3 12 437 446 435 449 0.84 Probable zinc-ribbon domain # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF331-216.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF331-216.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF331-216.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF331-216.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF331-216.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:04:13 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZNF331-217 - 463 7.4e-94 304.4 104.0 1 13 6.4e-06 0.0058 17.0 2.7 8 25 124 141 120 142 0.86 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF331-217 - 463 7.4e-94 304.4 104.0 2 13 1.9e-11 1.7e-08 34.5 1.5 2 24 146 168 145 169 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF331-217 - 463 7.4e-94 304.4 104.0 3 13 2.3e-11 2.1e-08 34.2 0.6 2 24 174 196 173 197 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF331-217 - 463 7.4e-94 304.4 104.0 4 13 2.9e-11 2.6e-08 33.9 0.4 2 25 202 225 201 226 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF331-217 - 463 7.4e-94 304.4 104.0 5 13 7.5e-11 6.7e-08 32.6 1.0 2 25 230 253 229 254 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF331-217 - 463 7.4e-94 304.4 104.0 6 13 5.8e-10 5.2e-07 29.8 1.4 2 24 258 280 257 282 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF331-217 - 463 7.4e-94 304.4 104.0 7 13 7e-12 6.3e-09 35.9 0.3 2 26 286 310 285 310 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF331-217 - 463 7.4e-94 304.4 104.0 8 13 5.9e-11 5.3e-08 32.9 2.3 2 24 314 336 313 337 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF331-217 - 463 7.4e-94 304.4 104.0 9 13 6.9e-12 6.2e-09 35.9 2.1 1 25 341 365 341 366 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF331-217 - 463 7.4e-94 304.4 104.0 10 13 1.7e-11 1.5e-08 34.6 1.5 1 24 369 392 369 394 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF331-217 - 463 7.4e-94 304.4 104.0 11 13 1.1e-09 9.7e-07 29.0 0.9 1 26 397 422 397 422 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF331-217 - 463 7.4e-94 304.4 104.0 12 13 6.7e-07 0.0006 20.1 3.2 2 26 426 450 425 450 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF331-217 - 463 7.4e-94 304.4 104.0 13 13 1.2 1.1e+03 0.3 1.6 1 10 453 462 453 463 0.86 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZNF331-217 - 463 2.1e-49 163.3 98.9 1 12 3.6e-08 3.2e-05 24.1 0.5 1 23 131 153 131 153 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF331-217 - 463 2.1e-49 163.3 98.9 2 12 0.00013 0.12 12.9 0.5 1 23 159 181 159 181 0.95 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF331-217 - 463 2.1e-49 163.3 98.9 3 12 8e-06 0.0071 16.7 0.1 1 23 187 209 187 209 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF331-217 - 463 2.1e-49 163.3 98.9 4 12 2.9e-08 2.6e-05 24.4 0.6 1 23 215 237 215 237 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF331-217 - 463 2.1e-49 163.3 98.9 5 12 2.1e-08 1.8e-05 24.9 1.1 1 23 243 265 243 265 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF331-217 - 463 2.1e-49 163.3 98.9 6 12 2.7e-05 0.024 15.1 0.7 1 23 271 293 271 293 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF331-217 - 463 2.1e-49 163.3 98.9 7 12 1.4e-07 0.00012 22.3 0.4 1 23 299 321 299 321 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF331-217 - 463 2.1e-49 163.3 98.9 8 12 2.6e-05 0.024 15.1 0.4 1 23 327 349 327 349 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF331-217 - 463 2.1e-49 163.3 98.9 9 12 5.6e-05 0.05 14.1 3.5 1 23 355 377 355 377 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF331-217 - 463 2.1e-49 163.3 98.9 10 12 1.9e-07 0.00017 21.9 0.3 1 23 383 405 383 405 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF331-217 - 463 2.1e-49 163.3 98.9 11 12 2.1e-06 0.0019 18.5 3.7 3 23 413 433 411 433 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF331-217 - 463 2.1e-49 163.3 98.9 12 12 2.6e-06 0.0024 18.2 4.7 1 23 439 461 439 461 0.98 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZNF331-217 - 463 6.8e-29 98.1 95.8 1 12 3.9e-06 0.0035 18.0 0.5 1 23 131 153 131 154 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF331-217 - 463 6.8e-29 98.1 95.8 2 12 0.0024 2.1 9.4 0.6 1 23 159 181 159 182 0.90 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF331-217 - 463 6.8e-29 98.1 95.8 3 12 0.0037 3.3 8.8 0.2 1 23 187 209 187 210 0.89 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF331-217 - 463 6.8e-29 98.1 95.8 4 12 3.9e-05 0.035 15.0 0.4 1 23 215 237 215 238 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF331-217 - 463 6.8e-29 98.1 95.8 5 12 1.2e-06 0.0011 19.6 0.8 1 23 243 265 243 266 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF331-217 - 463 6.8e-29 98.1 95.8 6 12 5.8e-05 0.052 14.4 0.7 1 23 271 293 271 294 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF331-217 - 463 6.8e-29 98.1 95.8 7 12 2.2e-05 0.02 15.7 0.4 1 23 299 321 299 322 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF331-217 - 463 6.8e-29 98.1 95.8 8 12 0.0016 1.5 9.9 0.7 1 23 327 349 327 350 0.91 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF331-217 - 463 6.8e-29 98.1 95.8 9 12 2.3e-05 0.021 15.7 2.7 1 23 355 377 355 378 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF331-217 - 463 6.8e-29 98.1 95.8 10 12 9.1e-05 0.081 13.8 0.3 1 23 383 405 383 406 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF331-217 - 463 6.8e-29 98.1 95.8 11 12 6.5e-05 0.058 14.3 3.1 2 23 412 433 411 434 0.89 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF331-217 - 463 6.8e-29 98.1 95.8 12 12 0.0063 5.6 8.1 3.7 1 23 439 461 439 462 0.95 C2H2-type zinc finger KRAB PF01352.27 42 ZNF331-217 - 463 2.5e-26 91.0 0.4 1 1 5e-29 4.5e-26 90.2 0.4 1 42 5 46 5 46 0.99 KRAB box zf-C2H2_6 PF13912.6 27 ZNF331-217 - 463 6.8e-26 89.7 107.2 1 12 9.6e-05 0.086 12.9 1.2 2 24 131 153 130 156 0.90 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF331-217 - 463 6.8e-26 89.7 107.2 2 12 2.9e-05 0.026 14.5 1.0 2 24 159 181 159 184 0.91 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF331-217 - 463 6.8e-26 89.7 107.2 3 12 0.00045 0.41 10.7 0.1 2 24 187 209 187 212 0.92 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF331-217 - 463 6.8e-26 89.7 107.2 4 12 4.7e-06 0.0042 17.1 0.6 2 24 215 237 215 240 0.92 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF331-217 - 463 6.8e-26 89.7 107.2 5 12 9.7e-07 0.00087 19.2 0.5 2 25 243 266 242 268 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF331-217 - 463 6.8e-26 89.7 107.2 6 12 0.00052 0.47 10.5 1.0 2 24 271 293 271 296 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF331-217 - 463 6.8e-26 89.7 107.2 7 12 7.9e-05 0.071 13.1 0.7 2 24 299 321 299 324 0.87 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF331-217 - 463 6.8e-26 89.7 107.2 8 12 2.3e-05 0.02 14.9 0.8 2 22 327 347 327 351 0.89 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF331-217 - 463 6.8e-26 89.7 107.2 9 12 0.0004 0.36 10.9 3.9 2 22 355 375 355 379 0.90 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF331-217 - 463 6.8e-26 89.7 107.2 10 12 2.9e-05 0.026 14.5 0.7 2 22 383 403 383 407 0.91 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF331-217 - 463 6.8e-26 89.7 107.2 11 12 0.0002 0.18 11.9 6.8 2 24 411 433 411 435 0.95 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF331-217 - 463 6.8e-26 89.7 107.2 12 12 0.016 14 5.8 4.5 2 24 439 461 438 463 0.84 C2H2-type zinc finger Zn-ribbon_8 PF09723.10 40 ZNF331-217 - 463 1.4e-16 60.3 67.1 1 7 3.9e-05 0.035 14.2 3.9 6 35 131 167 130 170 0.91 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF331-217 - 463 1.4e-16 60.3 67.1 2 7 7.8e-07 0.0007 19.7 1.2 6 38 187 226 186 227 0.89 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF331-217 - 463 1.4e-16 60.3 67.1 3 7 1.4e-05 0.013 15.6 5.0 5 34 242 278 241 280 0.79 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF331-217 - 463 1.4e-16 60.3 67.1 4 7 0.016 14 5.8 0.9 6 15 271 280 269 288 0.93 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF331-217 - 463 1.4e-16 60.3 67.1 5 7 9.9e-07 0.00089 19.3 3.3 6 35 299 335 298 337 0.92 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF331-217 - 463 1.4e-16 60.3 67.1 6 7 0.0012 1.1 9.4 7.7 6 34 355 390 354 393 0.87 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF331-217 - 463 1.4e-16 60.3 67.1 7 7 0.0012 1 9.5 6.5 6 35 411 447 410 451 0.88 Zinc ribbon domain zf-C2H2_jaz PF12171.8 27 ZNF331-217 - 463 1.1e-12 47.9 61.2 1 12 0.00093 0.83 10.0 0.3 2 22 131 151 130 151 0.95 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF331-217 - 463 1.1e-12 47.9 61.2 2 12 0.0013 1.1 9.6 0.5 2 22 159 179 158 179 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF331-217 - 463 1.1e-12 47.9 61.2 3 12 0.46 4.2e+02 1.4 0.1 2 11 187 196 186 206 0.89 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF331-217 - 463 1.1e-12 47.9 61.2 4 12 0.025 22 5.5 0.0 2 22 215 235 214 235 0.90 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF331-217 - 463 1.1e-12 47.9 61.2 5 12 0.0014 1.3 9.4 0.4 2 22 243 263 242 263 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF331-217 - 463 1.1e-12 47.9 61.2 6 12 0.089 80 3.7 0.3 2 21 271 290 270 291 0.82 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF331-217 - 463 1.1e-12 47.9 61.2 7 12 0.00041 0.37 11.1 0.2 2 22 299 319 298 319 0.95 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF331-217 - 463 1.1e-12 47.9 61.2 8 12 0.029 26 5.2 0.0 2 21 327 346 326 347 0.83 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF331-217 - 463 1.1e-12 47.9 61.2 9 12 0.1 93 3.5 1.1 2 21 355 374 354 375 0.79 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF331-217 - 463 1.1e-12 47.9 61.2 10 12 0.007 6.2 7.2 0.1 2 22 383 403 382 403 0.89 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF331-217 - 463 1.1e-12 47.9 61.2 11 12 0.00016 0.14 12.4 1.0 4 24 413 433 410 434 0.95 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF331-217 - 463 1.1e-12 47.9 61.2 12 12 0.023 20 5.6 3.1 2 22 439 459 438 459 0.93 Zinc-finger double-stranded RNA-binding zf-trcl PF13451.6 48 ZNF331-217 - 463 9.8e-07 28.6 59.1 1 11 0.053 47 4.0 6.6 4 42 130 167 127 172 0.81 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF331-217 - 463 9.8e-07 28.6 59.1 2 11 0.0017 1.5 8.8 0.1 3 16 185 198 183 201 0.87 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF331-217 - 463 9.8e-07 28.6 59.1 3 11 0.0099 8.9 6.3 0.2 3 14 213 224 211 225 0.88 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF331-217 - 463 9.8e-07 28.6 59.1 4 11 0.016 14 5.7 0.7 3 14 241 252 240 253 0.87 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF331-217 - 463 9.8e-07 28.6 59.1 5 11 0.0037 3.3 7.7 0.6 3 15 269 281 267 283 0.90 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF331-217 - 463 9.8e-07 28.6 59.1 6 11 0.032 29 4.7 0.1 3 15 297 309 295 312 0.89 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF331-217 - 463 9.8e-07 28.6 59.1 7 11 0.019 17 5.4 0.1 3 16 325 338 323 341 0.84 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF331-217 - 463 9.8e-07 28.6 59.1 8 11 0.034 30 4.6 0.1 3 14 353 364 351 365 0.87 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF331-217 - 463 9.8e-07 28.6 59.1 9 11 0.0027 2.5 8.1 0.1 4 16 382 394 380 397 0.86 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF331-217 - 463 9.8e-07 28.6 59.1 10 11 0.13 1.2e+02 2.7 0.1 3 14 409 420 409 433 0.88 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF331-217 - 463 9.8e-07 28.6 59.1 11 11 0.65 5.8e+02 0.5 1.2 3 12 437 446 435 449 0.84 Probable zinc-ribbon domain # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF331-217.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF331-217.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF331-217.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF331-217.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF331-217.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:04:13 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- KRAB PF01352.27 42 ZNF331-218 - 98 2.1e-27 94.5 0.4 1 1 1.8e-31 3.2e-27 93.9 0.4 1 42 5 46 5 46 0.99 KRAB box # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF331-218.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF331-218.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF331-218.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF331-218.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF331-218.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:04:14 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF331-219.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF331-219.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF331-219.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF331-219.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF331-219.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:04:14 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZNF331-220 - 463 7.4e-94 304.4 104.0 1 13 6.4e-06 0.0058 17.0 2.7 8 25 124 141 120 142 0.86 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF331-220 - 463 7.4e-94 304.4 104.0 2 13 1.9e-11 1.7e-08 34.5 1.5 2 24 146 168 145 169 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF331-220 - 463 7.4e-94 304.4 104.0 3 13 2.3e-11 2.1e-08 34.2 0.6 2 24 174 196 173 197 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF331-220 - 463 7.4e-94 304.4 104.0 4 13 2.9e-11 2.6e-08 33.9 0.4 2 25 202 225 201 226 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF331-220 - 463 7.4e-94 304.4 104.0 5 13 7.5e-11 6.7e-08 32.6 1.0 2 25 230 253 229 254 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF331-220 - 463 7.4e-94 304.4 104.0 6 13 5.8e-10 5.2e-07 29.8 1.4 2 24 258 280 257 282 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF331-220 - 463 7.4e-94 304.4 104.0 7 13 7e-12 6.3e-09 35.9 0.3 2 26 286 310 285 310 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF331-220 - 463 7.4e-94 304.4 104.0 8 13 5.9e-11 5.3e-08 32.9 2.3 2 24 314 336 313 337 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF331-220 - 463 7.4e-94 304.4 104.0 9 13 6.9e-12 6.2e-09 35.9 2.1 1 25 341 365 341 366 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF331-220 - 463 7.4e-94 304.4 104.0 10 13 1.7e-11 1.5e-08 34.6 1.5 1 24 369 392 369 394 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF331-220 - 463 7.4e-94 304.4 104.0 11 13 1.1e-09 9.7e-07 29.0 0.9 1 26 397 422 397 422 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF331-220 - 463 7.4e-94 304.4 104.0 12 13 6.7e-07 0.0006 20.1 3.2 2 26 426 450 425 450 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF331-220 - 463 7.4e-94 304.4 104.0 13 13 1.2 1.1e+03 0.3 1.6 1 10 453 462 453 463 0.86 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZNF331-220 - 463 2.1e-49 163.3 98.9 1 12 3.6e-08 3.2e-05 24.1 0.5 1 23 131 153 131 153 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF331-220 - 463 2.1e-49 163.3 98.9 2 12 0.00013 0.12 12.9 0.5 1 23 159 181 159 181 0.95 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF331-220 - 463 2.1e-49 163.3 98.9 3 12 8e-06 0.0071 16.7 0.1 1 23 187 209 187 209 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF331-220 - 463 2.1e-49 163.3 98.9 4 12 2.9e-08 2.6e-05 24.4 0.6 1 23 215 237 215 237 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF331-220 - 463 2.1e-49 163.3 98.9 5 12 2.1e-08 1.8e-05 24.9 1.1 1 23 243 265 243 265 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF331-220 - 463 2.1e-49 163.3 98.9 6 12 2.7e-05 0.024 15.1 0.7 1 23 271 293 271 293 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF331-220 - 463 2.1e-49 163.3 98.9 7 12 1.4e-07 0.00012 22.3 0.4 1 23 299 321 299 321 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF331-220 - 463 2.1e-49 163.3 98.9 8 12 2.6e-05 0.024 15.1 0.4 1 23 327 349 327 349 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF331-220 - 463 2.1e-49 163.3 98.9 9 12 5.6e-05 0.05 14.1 3.5 1 23 355 377 355 377 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF331-220 - 463 2.1e-49 163.3 98.9 10 12 1.9e-07 0.00017 21.9 0.3 1 23 383 405 383 405 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF331-220 - 463 2.1e-49 163.3 98.9 11 12 2.1e-06 0.0019 18.5 3.7 3 23 413 433 411 433 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF331-220 - 463 2.1e-49 163.3 98.9 12 12 2.6e-06 0.0024 18.2 4.7 1 23 439 461 439 461 0.98 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZNF331-220 - 463 6.8e-29 98.1 95.8 1 12 3.9e-06 0.0035 18.0 0.5 1 23 131 153 131 154 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF331-220 - 463 6.8e-29 98.1 95.8 2 12 0.0024 2.1 9.4 0.6 1 23 159 181 159 182 0.90 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF331-220 - 463 6.8e-29 98.1 95.8 3 12 0.0037 3.3 8.8 0.2 1 23 187 209 187 210 0.89 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF331-220 - 463 6.8e-29 98.1 95.8 4 12 3.9e-05 0.035 15.0 0.4 1 23 215 237 215 238 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF331-220 - 463 6.8e-29 98.1 95.8 5 12 1.2e-06 0.0011 19.6 0.8 1 23 243 265 243 266 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF331-220 - 463 6.8e-29 98.1 95.8 6 12 5.8e-05 0.052 14.4 0.7 1 23 271 293 271 294 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF331-220 - 463 6.8e-29 98.1 95.8 7 12 2.2e-05 0.02 15.7 0.4 1 23 299 321 299 322 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF331-220 - 463 6.8e-29 98.1 95.8 8 12 0.0016 1.5 9.9 0.7 1 23 327 349 327 350 0.91 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF331-220 - 463 6.8e-29 98.1 95.8 9 12 2.3e-05 0.021 15.7 2.7 1 23 355 377 355 378 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF331-220 - 463 6.8e-29 98.1 95.8 10 12 9.1e-05 0.081 13.8 0.3 1 23 383 405 383 406 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF331-220 - 463 6.8e-29 98.1 95.8 11 12 6.5e-05 0.058 14.3 3.1 2 23 412 433 411 434 0.89 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF331-220 - 463 6.8e-29 98.1 95.8 12 12 0.0063 5.6 8.1 3.7 1 23 439 461 439 462 0.95 C2H2-type zinc finger KRAB PF01352.27 42 ZNF331-220 - 463 2.5e-26 91.0 0.4 1 1 5e-29 4.5e-26 90.2 0.4 1 42 5 46 5 46 0.99 KRAB box zf-C2H2_6 PF13912.6 27 ZNF331-220 - 463 6.8e-26 89.7 107.2 1 12 9.6e-05 0.086 12.9 1.2 2 24 131 153 130 156 0.90 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF331-220 - 463 6.8e-26 89.7 107.2 2 12 2.9e-05 0.026 14.5 1.0 2 24 159 181 159 184 0.91 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF331-220 - 463 6.8e-26 89.7 107.2 3 12 0.00045 0.41 10.7 0.1 2 24 187 209 187 212 0.92 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF331-220 - 463 6.8e-26 89.7 107.2 4 12 4.7e-06 0.0042 17.1 0.6 2 24 215 237 215 240 0.92 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF331-220 - 463 6.8e-26 89.7 107.2 5 12 9.7e-07 0.00087 19.2 0.5 2 25 243 266 242 268 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF331-220 - 463 6.8e-26 89.7 107.2 6 12 0.00052 0.47 10.5 1.0 2 24 271 293 271 296 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF331-220 - 463 6.8e-26 89.7 107.2 7 12 7.9e-05 0.071 13.1 0.7 2 24 299 321 299 324 0.87 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF331-220 - 463 6.8e-26 89.7 107.2 8 12 2.3e-05 0.02 14.9 0.8 2 22 327 347 327 351 0.89 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF331-220 - 463 6.8e-26 89.7 107.2 9 12 0.0004 0.36 10.9 3.9 2 22 355 375 355 379 0.90 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF331-220 - 463 6.8e-26 89.7 107.2 10 12 2.9e-05 0.026 14.5 0.7 2 22 383 403 383 407 0.91 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF331-220 - 463 6.8e-26 89.7 107.2 11 12 0.0002 0.18 11.9 6.8 2 24 411 433 411 435 0.95 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF331-220 - 463 6.8e-26 89.7 107.2 12 12 0.016 14 5.8 4.5 2 24 439 461 438 463 0.84 C2H2-type zinc finger Zn-ribbon_8 PF09723.10 40 ZNF331-220 - 463 1.4e-16 60.3 67.1 1 7 3.9e-05 0.035 14.2 3.9 6 35 131 167 130 170 0.91 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF331-220 - 463 1.4e-16 60.3 67.1 2 7 7.8e-07 0.0007 19.7 1.2 6 38 187 226 186 227 0.89 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF331-220 - 463 1.4e-16 60.3 67.1 3 7 1.4e-05 0.013 15.6 5.0 5 34 242 278 241 280 0.79 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF331-220 - 463 1.4e-16 60.3 67.1 4 7 0.016 14 5.8 0.9 6 15 271 280 269 288 0.93 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF331-220 - 463 1.4e-16 60.3 67.1 5 7 9.9e-07 0.00089 19.3 3.3 6 35 299 335 298 337 0.92 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF331-220 - 463 1.4e-16 60.3 67.1 6 7 0.0012 1.1 9.4 7.7 6 34 355 390 354 393 0.87 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF331-220 - 463 1.4e-16 60.3 67.1 7 7 0.0012 1 9.5 6.5 6 35 411 447 410 451 0.88 Zinc ribbon domain zf-C2H2_jaz PF12171.8 27 ZNF331-220 - 463 1.1e-12 47.9 61.2 1 12 0.00093 0.83 10.0 0.3 2 22 131 151 130 151 0.95 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF331-220 - 463 1.1e-12 47.9 61.2 2 12 0.0013 1.1 9.6 0.5 2 22 159 179 158 179 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF331-220 - 463 1.1e-12 47.9 61.2 3 12 0.46 4.2e+02 1.4 0.1 2 11 187 196 186 206 0.89 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF331-220 - 463 1.1e-12 47.9 61.2 4 12 0.025 22 5.5 0.0 2 22 215 235 214 235 0.90 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF331-220 - 463 1.1e-12 47.9 61.2 5 12 0.0014 1.3 9.4 0.4 2 22 243 263 242 263 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF331-220 - 463 1.1e-12 47.9 61.2 6 12 0.089 80 3.7 0.3 2 21 271 290 270 291 0.82 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF331-220 - 463 1.1e-12 47.9 61.2 7 12 0.00041 0.37 11.1 0.2 2 22 299 319 298 319 0.95 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF331-220 - 463 1.1e-12 47.9 61.2 8 12 0.029 26 5.2 0.0 2 21 327 346 326 347 0.83 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF331-220 - 463 1.1e-12 47.9 61.2 9 12 0.1 93 3.5 1.1 2 21 355 374 354 375 0.79 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF331-220 - 463 1.1e-12 47.9 61.2 10 12 0.007 6.2 7.2 0.1 2 22 383 403 382 403 0.89 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF331-220 - 463 1.1e-12 47.9 61.2 11 12 0.00016 0.14 12.4 1.0 4 24 413 433 410 434 0.95 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF331-220 - 463 1.1e-12 47.9 61.2 12 12 0.023 20 5.6 3.1 2 22 439 459 438 459 0.93 Zinc-finger double-stranded RNA-binding zf-trcl PF13451.6 48 ZNF331-220 - 463 9.8e-07 28.6 59.1 1 11 0.053 47 4.0 6.6 4 42 130 167 127 172 0.81 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF331-220 - 463 9.8e-07 28.6 59.1 2 11 0.0017 1.5 8.8 0.1 3 16 185 198 183 201 0.87 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF331-220 - 463 9.8e-07 28.6 59.1 3 11 0.0099 8.9 6.3 0.2 3 14 213 224 211 225 0.88 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF331-220 - 463 9.8e-07 28.6 59.1 4 11 0.016 14 5.7 0.7 3 14 241 252 240 253 0.87 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF331-220 - 463 9.8e-07 28.6 59.1 5 11 0.0037 3.3 7.7 0.6 3 15 269 281 267 283 0.90 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF331-220 - 463 9.8e-07 28.6 59.1 6 11 0.032 29 4.7 0.1 3 15 297 309 295 312 0.89 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF331-220 - 463 9.8e-07 28.6 59.1 7 11 0.019 17 5.4 0.1 3 16 325 338 323 341 0.84 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF331-220 - 463 9.8e-07 28.6 59.1 8 11 0.034 30 4.6 0.1 3 14 353 364 351 365 0.87 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF331-220 - 463 9.8e-07 28.6 59.1 9 11 0.0027 2.5 8.1 0.1 4 16 382 394 380 397 0.86 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF331-220 - 463 9.8e-07 28.6 59.1 10 11 0.13 1.2e+02 2.7 0.1 3 14 409 420 409 433 0.88 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF331-220 - 463 9.8e-07 28.6 59.1 11 11 0.65 5.8e+02 0.5 1.2 3 12 437 446 435 449 0.84 Probable zinc-ribbon domain # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF331-220.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF331-220.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF331-220.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF331-220.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF331-220.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:04:15 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF331-221.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF331-221.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF331-221.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF331-221.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF331-221.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:04:15 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF331-222.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF331-222.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF331-222.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF331-222.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF331-222.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:04:15 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF331-223.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF331-223.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF331-223.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF331-223.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF331-223.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:04:16 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZNF331-224 - 463 7.4e-94 304.4 104.0 1 13 6.4e-06 0.0058 17.0 2.7 8 25 124 141 120 142 0.86 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF331-224 - 463 7.4e-94 304.4 104.0 2 13 1.9e-11 1.7e-08 34.5 1.5 2 24 146 168 145 169 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF331-224 - 463 7.4e-94 304.4 104.0 3 13 2.3e-11 2.1e-08 34.2 0.6 2 24 174 196 173 197 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF331-224 - 463 7.4e-94 304.4 104.0 4 13 2.9e-11 2.6e-08 33.9 0.4 2 25 202 225 201 226 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF331-224 - 463 7.4e-94 304.4 104.0 5 13 7.5e-11 6.7e-08 32.6 1.0 2 25 230 253 229 254 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF331-224 - 463 7.4e-94 304.4 104.0 6 13 5.8e-10 5.2e-07 29.8 1.4 2 24 258 280 257 282 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF331-224 - 463 7.4e-94 304.4 104.0 7 13 7e-12 6.3e-09 35.9 0.3 2 26 286 310 285 310 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF331-224 - 463 7.4e-94 304.4 104.0 8 13 5.9e-11 5.3e-08 32.9 2.3 2 24 314 336 313 337 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF331-224 - 463 7.4e-94 304.4 104.0 9 13 6.9e-12 6.2e-09 35.9 2.1 1 25 341 365 341 366 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF331-224 - 463 7.4e-94 304.4 104.0 10 13 1.7e-11 1.5e-08 34.6 1.5 1 24 369 392 369 394 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF331-224 - 463 7.4e-94 304.4 104.0 11 13 1.1e-09 9.7e-07 29.0 0.9 1 26 397 422 397 422 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF331-224 - 463 7.4e-94 304.4 104.0 12 13 6.7e-07 0.0006 20.1 3.2 2 26 426 450 425 450 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF331-224 - 463 7.4e-94 304.4 104.0 13 13 1.2 1.1e+03 0.3 1.6 1 10 453 462 453 463 0.86 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZNF331-224 - 463 2.1e-49 163.3 98.9 1 12 3.6e-08 3.2e-05 24.1 0.5 1 23 131 153 131 153 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF331-224 - 463 2.1e-49 163.3 98.9 2 12 0.00013 0.12 12.9 0.5 1 23 159 181 159 181 0.95 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF331-224 - 463 2.1e-49 163.3 98.9 3 12 8e-06 0.0071 16.7 0.1 1 23 187 209 187 209 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF331-224 - 463 2.1e-49 163.3 98.9 4 12 2.9e-08 2.6e-05 24.4 0.6 1 23 215 237 215 237 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF331-224 - 463 2.1e-49 163.3 98.9 5 12 2.1e-08 1.8e-05 24.9 1.1 1 23 243 265 243 265 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF331-224 - 463 2.1e-49 163.3 98.9 6 12 2.7e-05 0.024 15.1 0.7 1 23 271 293 271 293 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF331-224 - 463 2.1e-49 163.3 98.9 7 12 1.4e-07 0.00012 22.3 0.4 1 23 299 321 299 321 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF331-224 - 463 2.1e-49 163.3 98.9 8 12 2.6e-05 0.024 15.1 0.4 1 23 327 349 327 349 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF331-224 - 463 2.1e-49 163.3 98.9 9 12 5.6e-05 0.05 14.1 3.5 1 23 355 377 355 377 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF331-224 - 463 2.1e-49 163.3 98.9 10 12 1.9e-07 0.00017 21.9 0.3 1 23 383 405 383 405 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF331-224 - 463 2.1e-49 163.3 98.9 11 12 2.1e-06 0.0019 18.5 3.7 3 23 413 433 411 433 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF331-224 - 463 2.1e-49 163.3 98.9 12 12 2.6e-06 0.0024 18.2 4.7 1 23 439 461 439 461 0.98 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZNF331-224 - 463 6.8e-29 98.1 95.8 1 12 3.9e-06 0.0035 18.0 0.5 1 23 131 153 131 154 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF331-224 - 463 6.8e-29 98.1 95.8 2 12 0.0024 2.1 9.4 0.6 1 23 159 181 159 182 0.90 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF331-224 - 463 6.8e-29 98.1 95.8 3 12 0.0037 3.3 8.8 0.2 1 23 187 209 187 210 0.89 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF331-224 - 463 6.8e-29 98.1 95.8 4 12 3.9e-05 0.035 15.0 0.4 1 23 215 237 215 238 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF331-224 - 463 6.8e-29 98.1 95.8 5 12 1.2e-06 0.0011 19.6 0.8 1 23 243 265 243 266 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF331-224 - 463 6.8e-29 98.1 95.8 6 12 5.8e-05 0.052 14.4 0.7 1 23 271 293 271 294 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF331-224 - 463 6.8e-29 98.1 95.8 7 12 2.2e-05 0.02 15.7 0.4 1 23 299 321 299 322 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF331-224 - 463 6.8e-29 98.1 95.8 8 12 0.0016 1.5 9.9 0.7 1 23 327 349 327 350 0.91 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF331-224 - 463 6.8e-29 98.1 95.8 9 12 2.3e-05 0.021 15.7 2.7 1 23 355 377 355 378 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF331-224 - 463 6.8e-29 98.1 95.8 10 12 9.1e-05 0.081 13.8 0.3 1 23 383 405 383 406 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF331-224 - 463 6.8e-29 98.1 95.8 11 12 6.5e-05 0.058 14.3 3.1 2 23 412 433 411 434 0.89 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF331-224 - 463 6.8e-29 98.1 95.8 12 12 0.0063 5.6 8.1 3.7 1 23 439 461 439 462 0.95 C2H2-type zinc finger KRAB PF01352.27 42 ZNF331-224 - 463 2.5e-26 91.0 0.4 1 1 5e-29 4.5e-26 90.2 0.4 1 42 5 46 5 46 0.99 KRAB box zf-C2H2_6 PF13912.6 27 ZNF331-224 - 463 6.8e-26 89.7 107.2 1 12 9.6e-05 0.086 12.9 1.2 2 24 131 153 130 156 0.90 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF331-224 - 463 6.8e-26 89.7 107.2 2 12 2.9e-05 0.026 14.5 1.0 2 24 159 181 159 184 0.91 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF331-224 - 463 6.8e-26 89.7 107.2 3 12 0.00045 0.41 10.7 0.1 2 24 187 209 187 212 0.92 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF331-224 - 463 6.8e-26 89.7 107.2 4 12 4.7e-06 0.0042 17.1 0.6 2 24 215 237 215 240 0.92 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF331-224 - 463 6.8e-26 89.7 107.2 5 12 9.7e-07 0.00087 19.2 0.5 2 25 243 266 242 268 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF331-224 - 463 6.8e-26 89.7 107.2 6 12 0.00052 0.47 10.5 1.0 2 24 271 293 271 296 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF331-224 - 463 6.8e-26 89.7 107.2 7 12 7.9e-05 0.071 13.1 0.7 2 24 299 321 299 324 0.87 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF331-224 - 463 6.8e-26 89.7 107.2 8 12 2.3e-05 0.02 14.9 0.8 2 22 327 347 327 351 0.89 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF331-224 - 463 6.8e-26 89.7 107.2 9 12 0.0004 0.36 10.9 3.9 2 22 355 375 355 379 0.90 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF331-224 - 463 6.8e-26 89.7 107.2 10 12 2.9e-05 0.026 14.5 0.7 2 22 383 403 383 407 0.91 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF331-224 - 463 6.8e-26 89.7 107.2 11 12 0.0002 0.18 11.9 6.8 2 24 411 433 411 435 0.95 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF331-224 - 463 6.8e-26 89.7 107.2 12 12 0.016 14 5.8 4.5 2 24 439 461 438 463 0.84 C2H2-type zinc finger Zn-ribbon_8 PF09723.10 40 ZNF331-224 - 463 1.4e-16 60.3 67.1 1 7 3.9e-05 0.035 14.2 3.9 6 35 131 167 130 170 0.91 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF331-224 - 463 1.4e-16 60.3 67.1 2 7 7.8e-07 0.0007 19.7 1.2 6 38 187 226 186 227 0.89 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF331-224 - 463 1.4e-16 60.3 67.1 3 7 1.4e-05 0.013 15.6 5.0 5 34 242 278 241 280 0.79 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF331-224 - 463 1.4e-16 60.3 67.1 4 7 0.016 14 5.8 0.9 6 15 271 280 269 288 0.93 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF331-224 - 463 1.4e-16 60.3 67.1 5 7 9.9e-07 0.00089 19.3 3.3 6 35 299 335 298 337 0.92 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF331-224 - 463 1.4e-16 60.3 67.1 6 7 0.0012 1.1 9.4 7.7 6 34 355 390 354 393 0.87 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF331-224 - 463 1.4e-16 60.3 67.1 7 7 0.0012 1 9.5 6.5 6 35 411 447 410 451 0.88 Zinc ribbon domain zf-C2H2_jaz PF12171.8 27 ZNF331-224 - 463 1.1e-12 47.9 61.2 1 12 0.00093 0.83 10.0 0.3 2 22 131 151 130 151 0.95 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF331-224 - 463 1.1e-12 47.9 61.2 2 12 0.0013 1.1 9.6 0.5 2 22 159 179 158 179 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF331-224 - 463 1.1e-12 47.9 61.2 3 12 0.46 4.2e+02 1.4 0.1 2 11 187 196 186 206 0.89 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF331-224 - 463 1.1e-12 47.9 61.2 4 12 0.025 22 5.5 0.0 2 22 215 235 214 235 0.90 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF331-224 - 463 1.1e-12 47.9 61.2 5 12 0.0014 1.3 9.4 0.4 2 22 243 263 242 263 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF331-224 - 463 1.1e-12 47.9 61.2 6 12 0.089 80 3.7 0.3 2 21 271 290 270 291 0.82 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF331-224 - 463 1.1e-12 47.9 61.2 7 12 0.00041 0.37 11.1 0.2 2 22 299 319 298 319 0.95 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF331-224 - 463 1.1e-12 47.9 61.2 8 12 0.029 26 5.2 0.0 2 21 327 346 326 347 0.83 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF331-224 - 463 1.1e-12 47.9 61.2 9 12 0.1 93 3.5 1.1 2 21 355 374 354 375 0.79 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF331-224 - 463 1.1e-12 47.9 61.2 10 12 0.007 6.2 7.2 0.1 2 22 383 403 382 403 0.89 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF331-224 - 463 1.1e-12 47.9 61.2 11 12 0.00016 0.14 12.4 1.0 4 24 413 433 410 434 0.95 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF331-224 - 463 1.1e-12 47.9 61.2 12 12 0.023 20 5.6 3.1 2 22 439 459 438 459 0.93 Zinc-finger double-stranded RNA-binding zf-trcl PF13451.6 48 ZNF331-224 - 463 9.8e-07 28.6 59.1 1 11 0.053 47 4.0 6.6 4 42 130 167 127 172 0.81 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF331-224 - 463 9.8e-07 28.6 59.1 2 11 0.0017 1.5 8.8 0.1 3 16 185 198 183 201 0.87 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF331-224 - 463 9.8e-07 28.6 59.1 3 11 0.0099 8.9 6.3 0.2 3 14 213 224 211 225 0.88 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF331-224 - 463 9.8e-07 28.6 59.1 4 11 0.016 14 5.7 0.7 3 14 241 252 240 253 0.87 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF331-224 - 463 9.8e-07 28.6 59.1 5 11 0.0037 3.3 7.7 0.6 3 15 269 281 267 283 0.90 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF331-224 - 463 9.8e-07 28.6 59.1 6 11 0.032 29 4.7 0.1 3 15 297 309 295 312 0.89 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF331-224 - 463 9.8e-07 28.6 59.1 7 11 0.019 17 5.4 0.1 3 16 325 338 323 341 0.84 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF331-224 - 463 9.8e-07 28.6 59.1 8 11 0.034 30 4.6 0.1 3 14 353 364 351 365 0.87 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF331-224 - 463 9.8e-07 28.6 59.1 9 11 0.0027 2.5 8.1 0.1 4 16 382 394 380 397 0.86 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF331-224 - 463 9.8e-07 28.6 59.1 10 11 0.13 1.2e+02 2.7 0.1 3 14 409 420 409 433 0.88 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF331-224 - 463 9.8e-07 28.6 59.1 11 11 0.65 5.8e+02 0.5 1.2 3 12 437 446 435 449 0.84 Probable zinc-ribbon domain # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF331-224.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF331-224.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF331-224.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF331-224.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF331-224.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:04:16 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZNF331-225 - 463 7.4e-94 304.4 104.0 1 13 6.4e-06 0.0058 17.0 2.7 8 25 124 141 120 142 0.86 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF331-225 - 463 7.4e-94 304.4 104.0 2 13 1.9e-11 1.7e-08 34.5 1.5 2 24 146 168 145 169 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF331-225 - 463 7.4e-94 304.4 104.0 3 13 2.3e-11 2.1e-08 34.2 0.6 2 24 174 196 173 197 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF331-225 - 463 7.4e-94 304.4 104.0 4 13 2.9e-11 2.6e-08 33.9 0.4 2 25 202 225 201 226 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF331-225 - 463 7.4e-94 304.4 104.0 5 13 7.5e-11 6.7e-08 32.6 1.0 2 25 230 253 229 254 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF331-225 - 463 7.4e-94 304.4 104.0 6 13 5.8e-10 5.2e-07 29.8 1.4 2 24 258 280 257 282 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF331-225 - 463 7.4e-94 304.4 104.0 7 13 7e-12 6.3e-09 35.9 0.3 2 26 286 310 285 310 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF331-225 - 463 7.4e-94 304.4 104.0 8 13 5.9e-11 5.3e-08 32.9 2.3 2 24 314 336 313 337 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF331-225 - 463 7.4e-94 304.4 104.0 9 13 6.9e-12 6.2e-09 35.9 2.1 1 25 341 365 341 366 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF331-225 - 463 7.4e-94 304.4 104.0 10 13 1.7e-11 1.5e-08 34.6 1.5 1 24 369 392 369 394 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF331-225 - 463 7.4e-94 304.4 104.0 11 13 1.1e-09 9.7e-07 29.0 0.9 1 26 397 422 397 422 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF331-225 - 463 7.4e-94 304.4 104.0 12 13 6.7e-07 0.0006 20.1 3.2 2 26 426 450 425 450 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF331-225 - 463 7.4e-94 304.4 104.0 13 13 1.2 1.1e+03 0.3 1.6 1 10 453 462 453 463 0.86 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZNF331-225 - 463 2.1e-49 163.3 98.9 1 12 3.6e-08 3.2e-05 24.1 0.5 1 23 131 153 131 153 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF331-225 - 463 2.1e-49 163.3 98.9 2 12 0.00013 0.12 12.9 0.5 1 23 159 181 159 181 0.95 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF331-225 - 463 2.1e-49 163.3 98.9 3 12 8e-06 0.0071 16.7 0.1 1 23 187 209 187 209 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF331-225 - 463 2.1e-49 163.3 98.9 4 12 2.9e-08 2.6e-05 24.4 0.6 1 23 215 237 215 237 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF331-225 - 463 2.1e-49 163.3 98.9 5 12 2.1e-08 1.8e-05 24.9 1.1 1 23 243 265 243 265 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF331-225 - 463 2.1e-49 163.3 98.9 6 12 2.7e-05 0.024 15.1 0.7 1 23 271 293 271 293 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF331-225 - 463 2.1e-49 163.3 98.9 7 12 1.4e-07 0.00012 22.3 0.4 1 23 299 321 299 321 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF331-225 - 463 2.1e-49 163.3 98.9 8 12 2.6e-05 0.024 15.1 0.4 1 23 327 349 327 349 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF331-225 - 463 2.1e-49 163.3 98.9 9 12 5.6e-05 0.05 14.1 3.5 1 23 355 377 355 377 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF331-225 - 463 2.1e-49 163.3 98.9 10 12 1.9e-07 0.00017 21.9 0.3 1 23 383 405 383 405 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF331-225 - 463 2.1e-49 163.3 98.9 11 12 2.1e-06 0.0019 18.5 3.7 3 23 413 433 411 433 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF331-225 - 463 2.1e-49 163.3 98.9 12 12 2.6e-06 0.0024 18.2 4.7 1 23 439 461 439 461 0.98 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZNF331-225 - 463 6.8e-29 98.1 95.8 1 12 3.9e-06 0.0035 18.0 0.5 1 23 131 153 131 154 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF331-225 - 463 6.8e-29 98.1 95.8 2 12 0.0024 2.1 9.4 0.6 1 23 159 181 159 182 0.90 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF331-225 - 463 6.8e-29 98.1 95.8 3 12 0.0037 3.3 8.8 0.2 1 23 187 209 187 210 0.89 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF331-225 - 463 6.8e-29 98.1 95.8 4 12 3.9e-05 0.035 15.0 0.4 1 23 215 237 215 238 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF331-225 - 463 6.8e-29 98.1 95.8 5 12 1.2e-06 0.0011 19.6 0.8 1 23 243 265 243 266 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF331-225 - 463 6.8e-29 98.1 95.8 6 12 5.8e-05 0.052 14.4 0.7 1 23 271 293 271 294 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF331-225 - 463 6.8e-29 98.1 95.8 7 12 2.2e-05 0.02 15.7 0.4 1 23 299 321 299 322 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF331-225 - 463 6.8e-29 98.1 95.8 8 12 0.0016 1.5 9.9 0.7 1 23 327 349 327 350 0.91 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF331-225 - 463 6.8e-29 98.1 95.8 9 12 2.3e-05 0.021 15.7 2.7 1 23 355 377 355 378 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF331-225 - 463 6.8e-29 98.1 95.8 10 12 9.1e-05 0.081 13.8 0.3 1 23 383 405 383 406 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF331-225 - 463 6.8e-29 98.1 95.8 11 12 6.5e-05 0.058 14.3 3.1 2 23 412 433 411 434 0.89 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF331-225 - 463 6.8e-29 98.1 95.8 12 12 0.0063 5.6 8.1 3.7 1 23 439 461 439 462 0.95 C2H2-type zinc finger KRAB PF01352.27 42 ZNF331-225 - 463 2.5e-26 91.0 0.4 1 1 5e-29 4.5e-26 90.2 0.4 1 42 5 46 5 46 0.99 KRAB box zf-C2H2_6 PF13912.6 27 ZNF331-225 - 463 6.8e-26 89.7 107.2 1 12 9.6e-05 0.086 12.9 1.2 2 24 131 153 130 156 0.90 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF331-225 - 463 6.8e-26 89.7 107.2 2 12 2.9e-05 0.026 14.5 1.0 2 24 159 181 159 184 0.91 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF331-225 - 463 6.8e-26 89.7 107.2 3 12 0.00045 0.41 10.7 0.1 2 24 187 209 187 212 0.92 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF331-225 - 463 6.8e-26 89.7 107.2 4 12 4.7e-06 0.0042 17.1 0.6 2 24 215 237 215 240 0.92 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF331-225 - 463 6.8e-26 89.7 107.2 5 12 9.7e-07 0.00087 19.2 0.5 2 25 243 266 242 268 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF331-225 - 463 6.8e-26 89.7 107.2 6 12 0.00052 0.47 10.5 1.0 2 24 271 293 271 296 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF331-225 - 463 6.8e-26 89.7 107.2 7 12 7.9e-05 0.071 13.1 0.7 2 24 299 321 299 324 0.87 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF331-225 - 463 6.8e-26 89.7 107.2 8 12 2.3e-05 0.02 14.9 0.8 2 22 327 347 327 351 0.89 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF331-225 - 463 6.8e-26 89.7 107.2 9 12 0.0004 0.36 10.9 3.9 2 22 355 375 355 379 0.90 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF331-225 - 463 6.8e-26 89.7 107.2 10 12 2.9e-05 0.026 14.5 0.7 2 22 383 403 383 407 0.91 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF331-225 - 463 6.8e-26 89.7 107.2 11 12 0.0002 0.18 11.9 6.8 2 24 411 433 411 435 0.95 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF331-225 - 463 6.8e-26 89.7 107.2 12 12 0.016 14 5.8 4.5 2 24 439 461 438 463 0.84 C2H2-type zinc finger Zn-ribbon_8 PF09723.10 40 ZNF331-225 - 463 1.4e-16 60.3 67.1 1 7 3.9e-05 0.035 14.2 3.9 6 35 131 167 130 170 0.91 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF331-225 - 463 1.4e-16 60.3 67.1 2 7 7.8e-07 0.0007 19.7 1.2 6 38 187 226 186 227 0.89 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF331-225 - 463 1.4e-16 60.3 67.1 3 7 1.4e-05 0.013 15.6 5.0 5 34 242 278 241 280 0.79 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF331-225 - 463 1.4e-16 60.3 67.1 4 7 0.016 14 5.8 0.9 6 15 271 280 269 288 0.93 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF331-225 - 463 1.4e-16 60.3 67.1 5 7 9.9e-07 0.00089 19.3 3.3 6 35 299 335 298 337 0.92 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF331-225 - 463 1.4e-16 60.3 67.1 6 7 0.0012 1.1 9.4 7.7 6 34 355 390 354 393 0.87 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF331-225 - 463 1.4e-16 60.3 67.1 7 7 0.0012 1 9.5 6.5 6 35 411 447 410 451 0.88 Zinc ribbon domain zf-C2H2_jaz PF12171.8 27 ZNF331-225 - 463 1.1e-12 47.9 61.2 1 12 0.00093 0.83 10.0 0.3 2 22 131 151 130 151 0.95 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF331-225 - 463 1.1e-12 47.9 61.2 2 12 0.0013 1.1 9.6 0.5 2 22 159 179 158 179 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF331-225 - 463 1.1e-12 47.9 61.2 3 12 0.46 4.2e+02 1.4 0.1 2 11 187 196 186 206 0.89 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF331-225 - 463 1.1e-12 47.9 61.2 4 12 0.025 22 5.5 0.0 2 22 215 235 214 235 0.90 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF331-225 - 463 1.1e-12 47.9 61.2 5 12 0.0014 1.3 9.4 0.4 2 22 243 263 242 263 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF331-225 - 463 1.1e-12 47.9 61.2 6 12 0.089 80 3.7 0.3 2 21 271 290 270 291 0.82 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF331-225 - 463 1.1e-12 47.9 61.2 7 12 0.00041 0.37 11.1 0.2 2 22 299 319 298 319 0.95 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF331-225 - 463 1.1e-12 47.9 61.2 8 12 0.029 26 5.2 0.0 2 21 327 346 326 347 0.83 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF331-225 - 463 1.1e-12 47.9 61.2 9 12 0.1 93 3.5 1.1 2 21 355 374 354 375 0.79 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF331-225 - 463 1.1e-12 47.9 61.2 10 12 0.007 6.2 7.2 0.1 2 22 383 403 382 403 0.89 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF331-225 - 463 1.1e-12 47.9 61.2 11 12 0.00016 0.14 12.4 1.0 4 24 413 433 410 434 0.95 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF331-225 - 463 1.1e-12 47.9 61.2 12 12 0.023 20 5.6 3.1 2 22 439 459 438 459 0.93 Zinc-finger double-stranded RNA-binding zf-trcl PF13451.6 48 ZNF331-225 - 463 9.8e-07 28.6 59.1 1 11 0.053 47 4.0 6.6 4 42 130 167 127 172 0.81 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF331-225 - 463 9.8e-07 28.6 59.1 2 11 0.0017 1.5 8.8 0.1 3 16 185 198 183 201 0.87 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF331-225 - 463 9.8e-07 28.6 59.1 3 11 0.0099 8.9 6.3 0.2 3 14 213 224 211 225 0.88 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF331-225 - 463 9.8e-07 28.6 59.1 4 11 0.016 14 5.7 0.7 3 14 241 252 240 253 0.87 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF331-225 - 463 9.8e-07 28.6 59.1 5 11 0.0037 3.3 7.7 0.6 3 15 269 281 267 283 0.90 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF331-225 - 463 9.8e-07 28.6 59.1 6 11 0.032 29 4.7 0.1 3 15 297 309 295 312 0.89 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF331-225 - 463 9.8e-07 28.6 59.1 7 11 0.019 17 5.4 0.1 3 16 325 338 323 341 0.84 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF331-225 - 463 9.8e-07 28.6 59.1 8 11 0.034 30 4.6 0.1 3 14 353 364 351 365 0.87 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF331-225 - 463 9.8e-07 28.6 59.1 9 11 0.0027 2.5 8.1 0.1 4 16 382 394 380 397 0.86 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF331-225 - 463 9.8e-07 28.6 59.1 10 11 0.13 1.2e+02 2.7 0.1 3 14 409 420 409 433 0.88 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF331-225 - 463 9.8e-07 28.6 59.1 11 11 0.65 5.8e+02 0.5 1.2 3 12 437 446 435 449 0.84 Probable zinc-ribbon domain # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF331-225.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF331-225.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF331-225.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF331-225.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF331-225.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:04:17 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZNF331-226 - 463 7.4e-94 304.4 104.0 1 13 6.4e-06 0.0058 17.0 2.7 8 25 124 141 120 142 0.86 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF331-226 - 463 7.4e-94 304.4 104.0 2 13 1.9e-11 1.7e-08 34.5 1.5 2 24 146 168 145 169 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF331-226 - 463 7.4e-94 304.4 104.0 3 13 2.3e-11 2.1e-08 34.2 0.6 2 24 174 196 173 197 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF331-226 - 463 7.4e-94 304.4 104.0 4 13 2.9e-11 2.6e-08 33.9 0.4 2 25 202 225 201 226 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF331-226 - 463 7.4e-94 304.4 104.0 5 13 7.5e-11 6.7e-08 32.6 1.0 2 25 230 253 229 254 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF331-226 - 463 7.4e-94 304.4 104.0 6 13 5.8e-10 5.2e-07 29.8 1.4 2 24 258 280 257 282 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF331-226 - 463 7.4e-94 304.4 104.0 7 13 7e-12 6.3e-09 35.9 0.3 2 26 286 310 285 310 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF331-226 - 463 7.4e-94 304.4 104.0 8 13 5.9e-11 5.3e-08 32.9 2.3 2 24 314 336 313 337 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF331-226 - 463 7.4e-94 304.4 104.0 9 13 6.9e-12 6.2e-09 35.9 2.1 1 25 341 365 341 366 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF331-226 - 463 7.4e-94 304.4 104.0 10 13 1.7e-11 1.5e-08 34.6 1.5 1 24 369 392 369 394 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF331-226 - 463 7.4e-94 304.4 104.0 11 13 1.1e-09 9.7e-07 29.0 0.9 1 26 397 422 397 422 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF331-226 - 463 7.4e-94 304.4 104.0 12 13 6.7e-07 0.0006 20.1 3.2 2 26 426 450 425 450 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF331-226 - 463 7.4e-94 304.4 104.0 13 13 1.2 1.1e+03 0.3 1.6 1 10 453 462 453 463 0.86 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZNF331-226 - 463 2.1e-49 163.3 98.9 1 12 3.6e-08 3.2e-05 24.1 0.5 1 23 131 153 131 153 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF331-226 - 463 2.1e-49 163.3 98.9 2 12 0.00013 0.12 12.9 0.5 1 23 159 181 159 181 0.95 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF331-226 - 463 2.1e-49 163.3 98.9 3 12 8e-06 0.0071 16.7 0.1 1 23 187 209 187 209 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF331-226 - 463 2.1e-49 163.3 98.9 4 12 2.9e-08 2.6e-05 24.4 0.6 1 23 215 237 215 237 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF331-226 - 463 2.1e-49 163.3 98.9 5 12 2.1e-08 1.8e-05 24.9 1.1 1 23 243 265 243 265 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF331-226 - 463 2.1e-49 163.3 98.9 6 12 2.7e-05 0.024 15.1 0.7 1 23 271 293 271 293 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF331-226 - 463 2.1e-49 163.3 98.9 7 12 1.4e-07 0.00012 22.3 0.4 1 23 299 321 299 321 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF331-226 - 463 2.1e-49 163.3 98.9 8 12 2.6e-05 0.024 15.1 0.4 1 23 327 349 327 349 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF331-226 - 463 2.1e-49 163.3 98.9 9 12 5.6e-05 0.05 14.1 3.5 1 23 355 377 355 377 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF331-226 - 463 2.1e-49 163.3 98.9 10 12 1.9e-07 0.00017 21.9 0.3 1 23 383 405 383 405 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF331-226 - 463 2.1e-49 163.3 98.9 11 12 2.1e-06 0.0019 18.5 3.7 3 23 413 433 411 433 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF331-226 - 463 2.1e-49 163.3 98.9 12 12 2.6e-06 0.0024 18.2 4.7 1 23 439 461 439 461 0.98 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZNF331-226 - 463 6.8e-29 98.1 95.8 1 12 3.9e-06 0.0035 18.0 0.5 1 23 131 153 131 154 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF331-226 - 463 6.8e-29 98.1 95.8 2 12 0.0024 2.1 9.4 0.6 1 23 159 181 159 182 0.90 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF331-226 - 463 6.8e-29 98.1 95.8 3 12 0.0037 3.3 8.8 0.2 1 23 187 209 187 210 0.89 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF331-226 - 463 6.8e-29 98.1 95.8 4 12 3.9e-05 0.035 15.0 0.4 1 23 215 237 215 238 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF331-226 - 463 6.8e-29 98.1 95.8 5 12 1.2e-06 0.0011 19.6 0.8 1 23 243 265 243 266 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF331-226 - 463 6.8e-29 98.1 95.8 6 12 5.8e-05 0.052 14.4 0.7 1 23 271 293 271 294 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF331-226 - 463 6.8e-29 98.1 95.8 7 12 2.2e-05 0.02 15.7 0.4 1 23 299 321 299 322 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF331-226 - 463 6.8e-29 98.1 95.8 8 12 0.0016 1.5 9.9 0.7 1 23 327 349 327 350 0.91 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF331-226 - 463 6.8e-29 98.1 95.8 9 12 2.3e-05 0.021 15.7 2.7 1 23 355 377 355 378 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF331-226 - 463 6.8e-29 98.1 95.8 10 12 9.1e-05 0.081 13.8 0.3 1 23 383 405 383 406 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF331-226 - 463 6.8e-29 98.1 95.8 11 12 6.5e-05 0.058 14.3 3.1 2 23 412 433 411 434 0.89 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF331-226 - 463 6.8e-29 98.1 95.8 12 12 0.0063 5.6 8.1 3.7 1 23 439 461 439 462 0.95 C2H2-type zinc finger KRAB PF01352.27 42 ZNF331-226 - 463 2.5e-26 91.0 0.4 1 1 5e-29 4.5e-26 90.2 0.4 1 42 5 46 5 46 0.99 KRAB box zf-C2H2_6 PF13912.6 27 ZNF331-226 - 463 6.8e-26 89.7 107.2 1 12 9.6e-05 0.086 12.9 1.2 2 24 131 153 130 156 0.90 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF331-226 - 463 6.8e-26 89.7 107.2 2 12 2.9e-05 0.026 14.5 1.0 2 24 159 181 159 184 0.91 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF331-226 - 463 6.8e-26 89.7 107.2 3 12 0.00045 0.41 10.7 0.1 2 24 187 209 187 212 0.92 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF331-226 - 463 6.8e-26 89.7 107.2 4 12 4.7e-06 0.0042 17.1 0.6 2 24 215 237 215 240 0.92 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF331-226 - 463 6.8e-26 89.7 107.2 5 12 9.7e-07 0.00087 19.2 0.5 2 25 243 266 242 268 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF331-226 - 463 6.8e-26 89.7 107.2 6 12 0.00052 0.47 10.5 1.0 2 24 271 293 271 296 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF331-226 - 463 6.8e-26 89.7 107.2 7 12 7.9e-05 0.071 13.1 0.7 2 24 299 321 299 324 0.87 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF331-226 - 463 6.8e-26 89.7 107.2 8 12 2.3e-05 0.02 14.9 0.8 2 22 327 347 327 351 0.89 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF331-226 - 463 6.8e-26 89.7 107.2 9 12 0.0004 0.36 10.9 3.9 2 22 355 375 355 379 0.90 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF331-226 - 463 6.8e-26 89.7 107.2 10 12 2.9e-05 0.026 14.5 0.7 2 22 383 403 383 407 0.91 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF331-226 - 463 6.8e-26 89.7 107.2 11 12 0.0002 0.18 11.9 6.8 2 24 411 433 411 435 0.95 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF331-226 - 463 6.8e-26 89.7 107.2 12 12 0.016 14 5.8 4.5 2 24 439 461 438 463 0.84 C2H2-type zinc finger Zn-ribbon_8 PF09723.10 40 ZNF331-226 - 463 1.4e-16 60.3 67.1 1 7 3.9e-05 0.035 14.2 3.9 6 35 131 167 130 170 0.91 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF331-226 - 463 1.4e-16 60.3 67.1 2 7 7.8e-07 0.0007 19.7 1.2 6 38 187 226 186 227 0.89 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF331-226 - 463 1.4e-16 60.3 67.1 3 7 1.4e-05 0.013 15.6 5.0 5 34 242 278 241 280 0.79 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF331-226 - 463 1.4e-16 60.3 67.1 4 7 0.016 14 5.8 0.9 6 15 271 280 269 288 0.93 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF331-226 - 463 1.4e-16 60.3 67.1 5 7 9.9e-07 0.00089 19.3 3.3 6 35 299 335 298 337 0.92 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF331-226 - 463 1.4e-16 60.3 67.1 6 7 0.0012 1.1 9.4 7.7 6 34 355 390 354 393 0.87 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF331-226 - 463 1.4e-16 60.3 67.1 7 7 0.0012 1 9.5 6.5 6 35 411 447 410 451 0.88 Zinc ribbon domain zf-C2H2_jaz PF12171.8 27 ZNF331-226 - 463 1.1e-12 47.9 61.2 1 12 0.00093 0.83 10.0 0.3 2 22 131 151 130 151 0.95 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF331-226 - 463 1.1e-12 47.9 61.2 2 12 0.0013 1.1 9.6 0.5 2 22 159 179 158 179 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF331-226 - 463 1.1e-12 47.9 61.2 3 12 0.46 4.2e+02 1.4 0.1 2 11 187 196 186 206 0.89 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF331-226 - 463 1.1e-12 47.9 61.2 4 12 0.025 22 5.5 0.0 2 22 215 235 214 235 0.90 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF331-226 - 463 1.1e-12 47.9 61.2 5 12 0.0014 1.3 9.4 0.4 2 22 243 263 242 263 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF331-226 - 463 1.1e-12 47.9 61.2 6 12 0.089 80 3.7 0.3 2 21 271 290 270 291 0.82 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF331-226 - 463 1.1e-12 47.9 61.2 7 12 0.00041 0.37 11.1 0.2 2 22 299 319 298 319 0.95 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF331-226 - 463 1.1e-12 47.9 61.2 8 12 0.029 26 5.2 0.0 2 21 327 346 326 347 0.83 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF331-226 - 463 1.1e-12 47.9 61.2 9 12 0.1 93 3.5 1.1 2 21 355 374 354 375 0.79 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF331-226 - 463 1.1e-12 47.9 61.2 10 12 0.007 6.2 7.2 0.1 2 22 383 403 382 403 0.89 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF331-226 - 463 1.1e-12 47.9 61.2 11 12 0.00016 0.14 12.4 1.0 4 24 413 433 410 434 0.95 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF331-226 - 463 1.1e-12 47.9 61.2 12 12 0.023 20 5.6 3.1 2 22 439 459 438 459 0.93 Zinc-finger double-stranded RNA-binding zf-trcl PF13451.6 48 ZNF331-226 - 463 9.8e-07 28.6 59.1 1 11 0.053 47 4.0 6.6 4 42 130 167 127 172 0.81 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF331-226 - 463 9.8e-07 28.6 59.1 2 11 0.0017 1.5 8.8 0.1 3 16 185 198 183 201 0.87 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF331-226 - 463 9.8e-07 28.6 59.1 3 11 0.0099 8.9 6.3 0.2 3 14 213 224 211 225 0.88 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF331-226 - 463 9.8e-07 28.6 59.1 4 11 0.016 14 5.7 0.7 3 14 241 252 240 253 0.87 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF331-226 - 463 9.8e-07 28.6 59.1 5 11 0.0037 3.3 7.7 0.6 3 15 269 281 267 283 0.90 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF331-226 - 463 9.8e-07 28.6 59.1 6 11 0.032 29 4.7 0.1 3 15 297 309 295 312 0.89 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF331-226 - 463 9.8e-07 28.6 59.1 7 11 0.019 17 5.4 0.1 3 16 325 338 323 341 0.84 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF331-226 - 463 9.8e-07 28.6 59.1 8 11 0.034 30 4.6 0.1 3 14 353 364 351 365 0.87 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF331-226 - 463 9.8e-07 28.6 59.1 9 11 0.0027 2.5 8.1 0.1 4 16 382 394 380 397 0.86 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF331-226 - 463 9.8e-07 28.6 59.1 10 11 0.13 1.2e+02 2.7 0.1 3 14 409 420 409 433 0.88 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF331-226 - 463 9.8e-07 28.6 59.1 11 11 0.65 5.8e+02 0.5 1.2 3 12 437 446 435 449 0.84 Probable zinc-ribbon domain # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF331-226.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF331-226.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF331-226.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF331-226.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF331-226.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:04:17 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZNF331-227 - 463 7.4e-94 304.4 104.0 1 13 6.4e-06 0.0058 17.0 2.7 8 25 124 141 120 142 0.86 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF331-227 - 463 7.4e-94 304.4 104.0 2 13 1.9e-11 1.7e-08 34.5 1.5 2 24 146 168 145 169 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF331-227 - 463 7.4e-94 304.4 104.0 3 13 2.3e-11 2.1e-08 34.2 0.6 2 24 174 196 173 197 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF331-227 - 463 7.4e-94 304.4 104.0 4 13 2.9e-11 2.6e-08 33.9 0.4 2 25 202 225 201 226 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF331-227 - 463 7.4e-94 304.4 104.0 5 13 7.5e-11 6.7e-08 32.6 1.0 2 25 230 253 229 254 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF331-227 - 463 7.4e-94 304.4 104.0 6 13 5.8e-10 5.2e-07 29.8 1.4 2 24 258 280 257 282 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF331-227 - 463 7.4e-94 304.4 104.0 7 13 7e-12 6.3e-09 35.9 0.3 2 26 286 310 285 310 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF331-227 - 463 7.4e-94 304.4 104.0 8 13 5.9e-11 5.3e-08 32.9 2.3 2 24 314 336 313 337 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF331-227 - 463 7.4e-94 304.4 104.0 9 13 6.9e-12 6.2e-09 35.9 2.1 1 25 341 365 341 366 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF331-227 - 463 7.4e-94 304.4 104.0 10 13 1.7e-11 1.5e-08 34.6 1.5 1 24 369 392 369 394 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF331-227 - 463 7.4e-94 304.4 104.0 11 13 1.1e-09 9.7e-07 29.0 0.9 1 26 397 422 397 422 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF331-227 - 463 7.4e-94 304.4 104.0 12 13 6.7e-07 0.0006 20.1 3.2 2 26 426 450 425 450 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF331-227 - 463 7.4e-94 304.4 104.0 13 13 1.2 1.1e+03 0.3 1.6 1 10 453 462 453 463 0.86 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZNF331-227 - 463 2.1e-49 163.3 98.9 1 12 3.6e-08 3.2e-05 24.1 0.5 1 23 131 153 131 153 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF331-227 - 463 2.1e-49 163.3 98.9 2 12 0.00013 0.12 12.9 0.5 1 23 159 181 159 181 0.95 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF331-227 - 463 2.1e-49 163.3 98.9 3 12 8e-06 0.0071 16.7 0.1 1 23 187 209 187 209 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF331-227 - 463 2.1e-49 163.3 98.9 4 12 2.9e-08 2.6e-05 24.4 0.6 1 23 215 237 215 237 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF331-227 - 463 2.1e-49 163.3 98.9 5 12 2.1e-08 1.8e-05 24.9 1.1 1 23 243 265 243 265 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF331-227 - 463 2.1e-49 163.3 98.9 6 12 2.7e-05 0.024 15.1 0.7 1 23 271 293 271 293 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF331-227 - 463 2.1e-49 163.3 98.9 7 12 1.4e-07 0.00012 22.3 0.4 1 23 299 321 299 321 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF331-227 - 463 2.1e-49 163.3 98.9 8 12 2.6e-05 0.024 15.1 0.4 1 23 327 349 327 349 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF331-227 - 463 2.1e-49 163.3 98.9 9 12 5.6e-05 0.05 14.1 3.5 1 23 355 377 355 377 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF331-227 - 463 2.1e-49 163.3 98.9 10 12 1.9e-07 0.00017 21.9 0.3 1 23 383 405 383 405 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF331-227 - 463 2.1e-49 163.3 98.9 11 12 2.1e-06 0.0019 18.5 3.7 3 23 413 433 411 433 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF331-227 - 463 2.1e-49 163.3 98.9 12 12 2.6e-06 0.0024 18.2 4.7 1 23 439 461 439 461 0.98 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZNF331-227 - 463 6.8e-29 98.1 95.8 1 12 3.9e-06 0.0035 18.0 0.5 1 23 131 153 131 154 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF331-227 - 463 6.8e-29 98.1 95.8 2 12 0.0024 2.1 9.4 0.6 1 23 159 181 159 182 0.90 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF331-227 - 463 6.8e-29 98.1 95.8 3 12 0.0037 3.3 8.8 0.2 1 23 187 209 187 210 0.89 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF331-227 - 463 6.8e-29 98.1 95.8 4 12 3.9e-05 0.035 15.0 0.4 1 23 215 237 215 238 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF331-227 - 463 6.8e-29 98.1 95.8 5 12 1.2e-06 0.0011 19.6 0.8 1 23 243 265 243 266 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF331-227 - 463 6.8e-29 98.1 95.8 6 12 5.8e-05 0.052 14.4 0.7 1 23 271 293 271 294 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF331-227 - 463 6.8e-29 98.1 95.8 7 12 2.2e-05 0.02 15.7 0.4 1 23 299 321 299 322 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF331-227 - 463 6.8e-29 98.1 95.8 8 12 0.0016 1.5 9.9 0.7 1 23 327 349 327 350 0.91 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF331-227 - 463 6.8e-29 98.1 95.8 9 12 2.3e-05 0.021 15.7 2.7 1 23 355 377 355 378 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF331-227 - 463 6.8e-29 98.1 95.8 10 12 9.1e-05 0.081 13.8 0.3 1 23 383 405 383 406 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF331-227 - 463 6.8e-29 98.1 95.8 11 12 6.5e-05 0.058 14.3 3.1 2 23 412 433 411 434 0.89 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF331-227 - 463 6.8e-29 98.1 95.8 12 12 0.0063 5.6 8.1 3.7 1 23 439 461 439 462 0.95 C2H2-type zinc finger KRAB PF01352.27 42 ZNF331-227 - 463 2.5e-26 91.0 0.4 1 1 5e-29 4.5e-26 90.2 0.4 1 42 5 46 5 46 0.99 KRAB box zf-C2H2_6 PF13912.6 27 ZNF331-227 - 463 6.8e-26 89.7 107.2 1 12 9.6e-05 0.086 12.9 1.2 2 24 131 153 130 156 0.90 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF331-227 - 463 6.8e-26 89.7 107.2 2 12 2.9e-05 0.026 14.5 1.0 2 24 159 181 159 184 0.91 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF331-227 - 463 6.8e-26 89.7 107.2 3 12 0.00045 0.41 10.7 0.1 2 24 187 209 187 212 0.92 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF331-227 - 463 6.8e-26 89.7 107.2 4 12 4.7e-06 0.0042 17.1 0.6 2 24 215 237 215 240 0.92 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF331-227 - 463 6.8e-26 89.7 107.2 5 12 9.7e-07 0.00087 19.2 0.5 2 25 243 266 242 268 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF331-227 - 463 6.8e-26 89.7 107.2 6 12 0.00052 0.47 10.5 1.0 2 24 271 293 271 296 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF331-227 - 463 6.8e-26 89.7 107.2 7 12 7.9e-05 0.071 13.1 0.7 2 24 299 321 299 324 0.87 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF331-227 - 463 6.8e-26 89.7 107.2 8 12 2.3e-05 0.02 14.9 0.8 2 22 327 347 327 351 0.89 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF331-227 - 463 6.8e-26 89.7 107.2 9 12 0.0004 0.36 10.9 3.9 2 22 355 375 355 379 0.90 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF331-227 - 463 6.8e-26 89.7 107.2 10 12 2.9e-05 0.026 14.5 0.7 2 22 383 403 383 407 0.91 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF331-227 - 463 6.8e-26 89.7 107.2 11 12 0.0002 0.18 11.9 6.8 2 24 411 433 411 435 0.95 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF331-227 - 463 6.8e-26 89.7 107.2 12 12 0.016 14 5.8 4.5 2 24 439 461 438 463 0.84 C2H2-type zinc finger Zn-ribbon_8 PF09723.10 40 ZNF331-227 - 463 1.4e-16 60.3 67.1 1 7 3.9e-05 0.035 14.2 3.9 6 35 131 167 130 170 0.91 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF331-227 - 463 1.4e-16 60.3 67.1 2 7 7.8e-07 0.0007 19.7 1.2 6 38 187 226 186 227 0.89 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF331-227 - 463 1.4e-16 60.3 67.1 3 7 1.4e-05 0.013 15.6 5.0 5 34 242 278 241 280 0.79 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF331-227 - 463 1.4e-16 60.3 67.1 4 7 0.016 14 5.8 0.9 6 15 271 280 269 288 0.93 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF331-227 - 463 1.4e-16 60.3 67.1 5 7 9.9e-07 0.00089 19.3 3.3 6 35 299 335 298 337 0.92 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF331-227 - 463 1.4e-16 60.3 67.1 6 7 0.0012 1.1 9.4 7.7 6 34 355 390 354 393 0.87 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF331-227 - 463 1.4e-16 60.3 67.1 7 7 0.0012 1 9.5 6.5 6 35 411 447 410 451 0.88 Zinc ribbon domain zf-C2H2_jaz PF12171.8 27 ZNF331-227 - 463 1.1e-12 47.9 61.2 1 12 0.00093 0.83 10.0 0.3 2 22 131 151 130 151 0.95 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF331-227 - 463 1.1e-12 47.9 61.2 2 12 0.0013 1.1 9.6 0.5 2 22 159 179 158 179 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF331-227 - 463 1.1e-12 47.9 61.2 3 12 0.46 4.2e+02 1.4 0.1 2 11 187 196 186 206 0.89 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF331-227 - 463 1.1e-12 47.9 61.2 4 12 0.025 22 5.5 0.0 2 22 215 235 214 235 0.90 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF331-227 - 463 1.1e-12 47.9 61.2 5 12 0.0014 1.3 9.4 0.4 2 22 243 263 242 263 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF331-227 - 463 1.1e-12 47.9 61.2 6 12 0.089 80 3.7 0.3 2 21 271 290 270 291 0.82 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF331-227 - 463 1.1e-12 47.9 61.2 7 12 0.00041 0.37 11.1 0.2 2 22 299 319 298 319 0.95 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF331-227 - 463 1.1e-12 47.9 61.2 8 12 0.029 26 5.2 0.0 2 21 327 346 326 347 0.83 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF331-227 - 463 1.1e-12 47.9 61.2 9 12 0.1 93 3.5 1.1 2 21 355 374 354 375 0.79 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF331-227 - 463 1.1e-12 47.9 61.2 10 12 0.007 6.2 7.2 0.1 2 22 383 403 382 403 0.89 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF331-227 - 463 1.1e-12 47.9 61.2 11 12 0.00016 0.14 12.4 1.0 4 24 413 433 410 434 0.95 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF331-227 - 463 1.1e-12 47.9 61.2 12 12 0.023 20 5.6 3.1 2 22 439 459 438 459 0.93 Zinc-finger double-stranded RNA-binding zf-trcl PF13451.6 48 ZNF331-227 - 463 9.8e-07 28.6 59.1 1 11 0.053 47 4.0 6.6 4 42 130 167 127 172 0.81 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF331-227 - 463 9.8e-07 28.6 59.1 2 11 0.0017 1.5 8.8 0.1 3 16 185 198 183 201 0.87 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF331-227 - 463 9.8e-07 28.6 59.1 3 11 0.0099 8.9 6.3 0.2 3 14 213 224 211 225 0.88 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF331-227 - 463 9.8e-07 28.6 59.1 4 11 0.016 14 5.7 0.7 3 14 241 252 240 253 0.87 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF331-227 - 463 9.8e-07 28.6 59.1 5 11 0.0037 3.3 7.7 0.6 3 15 269 281 267 283 0.90 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF331-227 - 463 9.8e-07 28.6 59.1 6 11 0.032 29 4.7 0.1 3 15 297 309 295 312 0.89 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF331-227 - 463 9.8e-07 28.6 59.1 7 11 0.019 17 5.4 0.1 3 16 325 338 323 341 0.84 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF331-227 - 463 9.8e-07 28.6 59.1 8 11 0.034 30 4.6 0.1 3 14 353 364 351 365 0.87 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF331-227 - 463 9.8e-07 28.6 59.1 9 11 0.0027 2.5 8.1 0.1 4 16 382 394 380 397 0.86 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF331-227 - 463 9.8e-07 28.6 59.1 10 11 0.13 1.2e+02 2.7 0.1 3 14 409 420 409 433 0.88 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF331-227 - 463 9.8e-07 28.6 59.1 11 11 0.65 5.8e+02 0.5 1.2 3 12 437 446 435 449 0.84 Probable zinc-ribbon domain # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF331-227.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF331-227.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF331-227.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF331-227.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF331-227.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:04:18 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZNF331-228 - 463 7.4e-94 304.4 104.0 1 13 6.4e-06 0.0058 17.0 2.7 8 25 124 141 120 142 0.86 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF331-228 - 463 7.4e-94 304.4 104.0 2 13 1.9e-11 1.7e-08 34.5 1.5 2 24 146 168 145 169 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF331-228 - 463 7.4e-94 304.4 104.0 3 13 2.3e-11 2.1e-08 34.2 0.6 2 24 174 196 173 197 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF331-228 - 463 7.4e-94 304.4 104.0 4 13 2.9e-11 2.6e-08 33.9 0.4 2 25 202 225 201 226 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF331-228 - 463 7.4e-94 304.4 104.0 5 13 7.5e-11 6.7e-08 32.6 1.0 2 25 230 253 229 254 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF331-228 - 463 7.4e-94 304.4 104.0 6 13 5.8e-10 5.2e-07 29.8 1.4 2 24 258 280 257 282 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF331-228 - 463 7.4e-94 304.4 104.0 7 13 7e-12 6.3e-09 35.9 0.3 2 26 286 310 285 310 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF331-228 - 463 7.4e-94 304.4 104.0 8 13 5.9e-11 5.3e-08 32.9 2.3 2 24 314 336 313 337 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF331-228 - 463 7.4e-94 304.4 104.0 9 13 6.9e-12 6.2e-09 35.9 2.1 1 25 341 365 341 366 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF331-228 - 463 7.4e-94 304.4 104.0 10 13 1.7e-11 1.5e-08 34.6 1.5 1 24 369 392 369 394 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF331-228 - 463 7.4e-94 304.4 104.0 11 13 1.1e-09 9.7e-07 29.0 0.9 1 26 397 422 397 422 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF331-228 - 463 7.4e-94 304.4 104.0 12 13 6.7e-07 0.0006 20.1 3.2 2 26 426 450 425 450 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF331-228 - 463 7.4e-94 304.4 104.0 13 13 1.2 1.1e+03 0.3 1.6 1 10 453 462 453 463 0.86 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZNF331-228 - 463 2.1e-49 163.3 98.9 1 12 3.6e-08 3.2e-05 24.1 0.5 1 23 131 153 131 153 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF331-228 - 463 2.1e-49 163.3 98.9 2 12 0.00013 0.12 12.9 0.5 1 23 159 181 159 181 0.95 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF331-228 - 463 2.1e-49 163.3 98.9 3 12 8e-06 0.0071 16.7 0.1 1 23 187 209 187 209 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF331-228 - 463 2.1e-49 163.3 98.9 4 12 2.9e-08 2.6e-05 24.4 0.6 1 23 215 237 215 237 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF331-228 - 463 2.1e-49 163.3 98.9 5 12 2.1e-08 1.8e-05 24.9 1.1 1 23 243 265 243 265 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF331-228 - 463 2.1e-49 163.3 98.9 6 12 2.7e-05 0.024 15.1 0.7 1 23 271 293 271 293 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF331-228 - 463 2.1e-49 163.3 98.9 7 12 1.4e-07 0.00012 22.3 0.4 1 23 299 321 299 321 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF331-228 - 463 2.1e-49 163.3 98.9 8 12 2.6e-05 0.024 15.1 0.4 1 23 327 349 327 349 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF331-228 - 463 2.1e-49 163.3 98.9 9 12 5.6e-05 0.05 14.1 3.5 1 23 355 377 355 377 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF331-228 - 463 2.1e-49 163.3 98.9 10 12 1.9e-07 0.00017 21.9 0.3 1 23 383 405 383 405 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF331-228 - 463 2.1e-49 163.3 98.9 11 12 2.1e-06 0.0019 18.5 3.7 3 23 413 433 411 433 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF331-228 - 463 2.1e-49 163.3 98.9 12 12 2.6e-06 0.0024 18.2 4.7 1 23 439 461 439 461 0.98 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZNF331-228 - 463 6.8e-29 98.1 95.8 1 12 3.9e-06 0.0035 18.0 0.5 1 23 131 153 131 154 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF331-228 - 463 6.8e-29 98.1 95.8 2 12 0.0024 2.1 9.4 0.6 1 23 159 181 159 182 0.90 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF331-228 - 463 6.8e-29 98.1 95.8 3 12 0.0037 3.3 8.8 0.2 1 23 187 209 187 210 0.89 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF331-228 - 463 6.8e-29 98.1 95.8 4 12 3.9e-05 0.035 15.0 0.4 1 23 215 237 215 238 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF331-228 - 463 6.8e-29 98.1 95.8 5 12 1.2e-06 0.0011 19.6 0.8 1 23 243 265 243 266 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF331-228 - 463 6.8e-29 98.1 95.8 6 12 5.8e-05 0.052 14.4 0.7 1 23 271 293 271 294 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF331-228 - 463 6.8e-29 98.1 95.8 7 12 2.2e-05 0.02 15.7 0.4 1 23 299 321 299 322 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF331-228 - 463 6.8e-29 98.1 95.8 8 12 0.0016 1.5 9.9 0.7 1 23 327 349 327 350 0.91 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF331-228 - 463 6.8e-29 98.1 95.8 9 12 2.3e-05 0.021 15.7 2.7 1 23 355 377 355 378 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF331-228 - 463 6.8e-29 98.1 95.8 10 12 9.1e-05 0.081 13.8 0.3 1 23 383 405 383 406 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF331-228 - 463 6.8e-29 98.1 95.8 11 12 6.5e-05 0.058 14.3 3.1 2 23 412 433 411 434 0.89 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF331-228 - 463 6.8e-29 98.1 95.8 12 12 0.0063 5.6 8.1 3.7 1 23 439 461 439 462 0.95 C2H2-type zinc finger KRAB PF01352.27 42 ZNF331-228 - 463 2.5e-26 91.0 0.4 1 1 5e-29 4.5e-26 90.2 0.4 1 42 5 46 5 46 0.99 KRAB box zf-C2H2_6 PF13912.6 27 ZNF331-228 - 463 6.8e-26 89.7 107.2 1 12 9.6e-05 0.086 12.9 1.2 2 24 131 153 130 156 0.90 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF331-228 - 463 6.8e-26 89.7 107.2 2 12 2.9e-05 0.026 14.5 1.0 2 24 159 181 159 184 0.91 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF331-228 - 463 6.8e-26 89.7 107.2 3 12 0.00045 0.41 10.7 0.1 2 24 187 209 187 212 0.92 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF331-228 - 463 6.8e-26 89.7 107.2 4 12 4.7e-06 0.0042 17.1 0.6 2 24 215 237 215 240 0.92 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF331-228 - 463 6.8e-26 89.7 107.2 5 12 9.7e-07 0.00087 19.2 0.5 2 25 243 266 242 268 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF331-228 - 463 6.8e-26 89.7 107.2 6 12 0.00052 0.47 10.5 1.0 2 24 271 293 271 296 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF331-228 - 463 6.8e-26 89.7 107.2 7 12 7.9e-05 0.071 13.1 0.7 2 24 299 321 299 324 0.87 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF331-228 - 463 6.8e-26 89.7 107.2 8 12 2.3e-05 0.02 14.9 0.8 2 22 327 347 327 351 0.89 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF331-228 - 463 6.8e-26 89.7 107.2 9 12 0.0004 0.36 10.9 3.9 2 22 355 375 355 379 0.90 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF331-228 - 463 6.8e-26 89.7 107.2 10 12 2.9e-05 0.026 14.5 0.7 2 22 383 403 383 407 0.91 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF331-228 - 463 6.8e-26 89.7 107.2 11 12 0.0002 0.18 11.9 6.8 2 24 411 433 411 435 0.95 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF331-228 - 463 6.8e-26 89.7 107.2 12 12 0.016 14 5.8 4.5 2 24 439 461 438 463 0.84 C2H2-type zinc finger Zn-ribbon_8 PF09723.10 40 ZNF331-228 - 463 1.4e-16 60.3 67.1 1 7 3.9e-05 0.035 14.2 3.9 6 35 131 167 130 170 0.91 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF331-228 - 463 1.4e-16 60.3 67.1 2 7 7.8e-07 0.0007 19.7 1.2 6 38 187 226 186 227 0.89 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF331-228 - 463 1.4e-16 60.3 67.1 3 7 1.4e-05 0.013 15.6 5.0 5 34 242 278 241 280 0.79 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF331-228 - 463 1.4e-16 60.3 67.1 4 7 0.016 14 5.8 0.9 6 15 271 280 269 288 0.93 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF331-228 - 463 1.4e-16 60.3 67.1 5 7 9.9e-07 0.00089 19.3 3.3 6 35 299 335 298 337 0.92 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF331-228 - 463 1.4e-16 60.3 67.1 6 7 0.0012 1.1 9.4 7.7 6 34 355 390 354 393 0.87 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF331-228 - 463 1.4e-16 60.3 67.1 7 7 0.0012 1 9.5 6.5 6 35 411 447 410 451 0.88 Zinc ribbon domain zf-C2H2_jaz PF12171.8 27 ZNF331-228 - 463 1.1e-12 47.9 61.2 1 12 0.00093 0.83 10.0 0.3 2 22 131 151 130 151 0.95 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF331-228 - 463 1.1e-12 47.9 61.2 2 12 0.0013 1.1 9.6 0.5 2 22 159 179 158 179 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF331-228 - 463 1.1e-12 47.9 61.2 3 12 0.46 4.2e+02 1.4 0.1 2 11 187 196 186 206 0.89 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF331-228 - 463 1.1e-12 47.9 61.2 4 12 0.025 22 5.5 0.0 2 22 215 235 214 235 0.90 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF331-228 - 463 1.1e-12 47.9 61.2 5 12 0.0014 1.3 9.4 0.4 2 22 243 263 242 263 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF331-228 - 463 1.1e-12 47.9 61.2 6 12 0.089 80 3.7 0.3 2 21 271 290 270 291 0.82 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF331-228 - 463 1.1e-12 47.9 61.2 7 12 0.00041 0.37 11.1 0.2 2 22 299 319 298 319 0.95 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF331-228 - 463 1.1e-12 47.9 61.2 8 12 0.029 26 5.2 0.0 2 21 327 346 326 347 0.83 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF331-228 - 463 1.1e-12 47.9 61.2 9 12 0.1 93 3.5 1.1 2 21 355 374 354 375 0.79 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF331-228 - 463 1.1e-12 47.9 61.2 10 12 0.007 6.2 7.2 0.1 2 22 383 403 382 403 0.89 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF331-228 - 463 1.1e-12 47.9 61.2 11 12 0.00016 0.14 12.4 1.0 4 24 413 433 410 434 0.95 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF331-228 - 463 1.1e-12 47.9 61.2 12 12 0.023 20 5.6 3.1 2 22 439 459 438 459 0.93 Zinc-finger double-stranded RNA-binding zf-trcl PF13451.6 48 ZNF331-228 - 463 9.8e-07 28.6 59.1 1 11 0.053 47 4.0 6.6 4 42 130 167 127 172 0.81 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF331-228 - 463 9.8e-07 28.6 59.1 2 11 0.0017 1.5 8.8 0.1 3 16 185 198 183 201 0.87 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF331-228 - 463 9.8e-07 28.6 59.1 3 11 0.0099 8.9 6.3 0.2 3 14 213 224 211 225 0.88 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF331-228 - 463 9.8e-07 28.6 59.1 4 11 0.016 14 5.7 0.7 3 14 241 252 240 253 0.87 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF331-228 - 463 9.8e-07 28.6 59.1 5 11 0.0037 3.3 7.7 0.6 3 15 269 281 267 283 0.90 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF331-228 - 463 9.8e-07 28.6 59.1 6 11 0.032 29 4.7 0.1 3 15 297 309 295 312 0.89 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF331-228 - 463 9.8e-07 28.6 59.1 7 11 0.019 17 5.4 0.1 3 16 325 338 323 341 0.84 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF331-228 - 463 9.8e-07 28.6 59.1 8 11 0.034 30 4.6 0.1 3 14 353 364 351 365 0.87 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF331-228 - 463 9.8e-07 28.6 59.1 9 11 0.0027 2.5 8.1 0.1 4 16 382 394 380 397 0.86 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF331-228 - 463 9.8e-07 28.6 59.1 10 11 0.13 1.2e+02 2.7 0.1 3 14 409 420 409 433 0.88 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF331-228 - 463 9.8e-07 28.6 59.1 11 11 0.65 5.8e+02 0.5 1.2 3 12 437 446 435 449 0.84 Probable zinc-ribbon domain # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF331-228.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF331-228.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF331-228.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF331-228.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF331-228.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:04:18 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF331-229.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF331-229.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF331-229.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF331-229.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF331-229.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:04:19 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF331-230.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF331-230.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF331-230.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF331-230.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF331-230.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:04:19 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF331-231.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF331-231.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF331-231.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF331-231.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF331-231.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:04:19 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZNF333-201 - 665 6e-69 225.6 68.6 1 11 0.0036 2.8 8.5 0.1 10 25 361 376 350 377 0.83 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF333-201 - 665 6e-69 225.6 68.6 2 11 8.8e-06 0.0069 16.8 1.3 1 26 380 405 380 405 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF333-201 - 665 6e-69 225.6 68.6 3 11 9.7e-15 7.5e-12 45.1 1.4 1 26 408 433 408 433 0.97 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF333-201 - 665 6e-69 225.6 68.6 4 11 1.4e-11 1.1e-08 35.1 0.2 1 25 436 460 436 461 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF333-201 - 665 6e-69 225.6 68.6 5 11 3e-12 2.3e-09 37.2 0.5 1 24 464 487 464 489 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF333-201 - 665 6e-69 225.6 68.6 6 11 1.4e-08 1.1e-05 25.7 2.1 1 24 492 515 492 517 0.90 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF333-201 - 665 6e-69 225.6 68.6 7 11 1.5e-07 0.00012 22.4 0.4 1 22 520 541 520 544 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF333-201 - 665 6e-69 225.6 68.6 8 11 5.5e-11 4.3e-08 33.2 0.4 2 25 549 572 548 573 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF333-201 - 665 6e-69 225.6 68.6 9 11 1.2e-09 9.4e-07 29.0 0.3 1 25 576 600 576 601 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF333-201 - 665 6e-69 225.6 68.6 10 11 4.2e-06 0.0033 17.8 1.3 2 26 605 629 604 629 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF333-201 - 665 6e-69 225.6 68.6 11 11 5.6 4.4e+03 -1.6 0.3 2 9 633 640 632 643 0.82 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZNF333-201 - 665 4.8e-62 203.1 74.9 1 10 1.4e-07 0.00011 22.5 1.4 1 23 366 388 366 388 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF333-201 - 665 4.8e-62 203.1 74.9 2 10 1.2e-09 9.4e-07 29.0 1.4 1 23 394 416 394 416 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF333-201 - 665 4.8e-62 203.1 74.9 3 10 2.7e-08 2.1e-05 24.7 1.3 1 23 422 444 422 444 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF333-201 - 665 4.8e-62 203.1 74.9 4 10 3.6e-10 2.8e-07 30.6 0.5 1 23 450 472 450 472 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF333-201 - 665 4.8e-62 203.1 74.9 5 10 2e-07 0.00016 22.0 2.6 1 23 478 500 478 500 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF333-201 - 665 4.8e-62 203.1 74.9 6 10 2.6e-08 2e-05 24.8 2.2 1 23 506 528 506 528 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF333-201 - 665 4.8e-62 203.1 74.9 7 10 9.2e-08 7.2e-05 23.0 0.5 1 23 534 556 534 556 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF333-201 - 665 4.8e-62 203.1 74.9 8 10 7e-09 5.5e-06 26.6 0.3 1 23 562 584 562 584 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF333-201 - 665 4.8e-62 203.1 74.9 9 10 5.5e-08 4.3e-05 23.7 0.3 1 23 590 612 590 612 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF333-201 - 665 4.8e-62 203.1 74.9 10 10 1.1e-07 8.7e-05 22.8 3.7 1 23 618 640 618 640 0.99 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZNF333-201 - 665 4.5e-39 129.7 70.6 1 10 8e-06 0.0062 17.3 1.0 1 23 366 388 366 389 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF333-201 - 665 4.5e-39 129.7 70.6 2 10 1.7e-06 0.0013 19.4 0.9 3 23 396 416 394 417 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF333-201 - 665 4.5e-39 129.7 70.6 3 10 2e-05 0.015 16.1 0.8 1 23 422 444 422 445 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF333-201 - 665 4.5e-39 129.7 70.6 4 10 6.5e-07 0.0005 20.7 0.5 1 23 450 472 450 473 0.97 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF333-201 - 665 4.5e-39 129.7 70.6 5 10 1.5e-06 0.0012 19.5 2.4 1 23 478 500 478 501 0.97 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF333-201 - 665 4.5e-39 129.7 70.6 6 10 4.1e-06 0.0032 18.2 1.4 1 23 506 528 506 529 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF333-201 - 665 4.5e-39 129.7 70.6 7 10 5.3e-05 0.042 14.7 0.5 1 23 534 556 534 557 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF333-201 - 665 4.5e-39 129.7 70.6 8 10 9.7e-07 0.00076 20.1 0.4 1 23 562 584 562 585 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF333-201 - 665 4.5e-39 129.7 70.6 9 10 1.6e-05 0.012 16.4 0.5 1 23 590 612 590 613 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF333-201 - 665 4.5e-39 129.7 70.6 10 10 0.00023 0.18 12.7 2.6 1 23 618 640 618 641 0.96 C2H2-type zinc finger KRAB PF01352.27 42 ZNF333-201 - 665 9.7e-39 130.8 0.6 1 2 1.7e-15 1.3e-12 47.1 0.0 1 42 3 43 3 43 0.95 KRAB box KRAB PF01352.27 42 ZNF333-201 - 665 9.7e-39 130.8 0.6 2 2 2.2e-26 1.7e-23 82.0 0.1 1 42 202 243 202 243 0.99 KRAB box zf-C2H2_6 PF13912.6 27 ZNF333-201 - 665 1.1e-24 85.8 69.9 1 10 4.8e-05 0.037 14.0 1.0 2 25 366 389 365 391 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF333-201 - 665 1.1e-24 85.8 69.9 2 10 9.9e-06 0.0077 16.2 0.8 2 24 394 416 394 419 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF333-201 - 665 1.1e-24 85.8 69.9 3 10 3.8e-05 0.029 14.4 0.6 2 24 422 444 422 447 0.91 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF333-201 - 665 1.1e-24 85.8 69.9 4 10 0.00028 0.22 11.6 0.4 2 24 450 472 450 475 0.95 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF333-201 - 665 1.1e-24 85.8 69.9 5 10 1.6e-05 0.012 15.6 3.4 2 25 478 501 478 503 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF333-201 - 665 1.1e-24 85.8 69.9 6 10 3.7e-05 0.029 14.4 0.8 2 24 506 528 506 531 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF333-201 - 665 1.1e-24 85.8 69.9 7 10 8.6e-05 0.067 13.2 0.4 2 24 534 556 533 559 0.95 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF333-201 - 665 1.1e-24 85.8 69.9 8 10 5.5e-05 0.043 13.8 0.7 2 25 562 585 562 587 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF333-201 - 665 1.1e-24 85.8 69.9 9 10 0.016 13 6.0 0.4 2 13 590 601 590 614 0.73 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF333-201 - 665 1.1e-24 85.8 69.9 10 10 0.00053 0.41 10.7 2.8 2 24 618 640 618 642 0.97 C2H2-type zinc finger zinc_ribbon_15 PF17032.5 86 ZNF333-201 - 665 5.6e-08 33.4 37.3 1 5 0.008 6.3 7.6 5.8 30 77 358 405 336 412 0.84 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF333-201 - 665 5.6e-08 33.4 37.3 2 5 0.00075 0.59 10.9 1.0 32 77 416 461 411 465 0.86 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF333-201 - 665 5.6e-08 33.4 37.3 3 5 0.00025 0.19 12.5 1.9 32 76 472 516 467 522 0.87 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF333-201 - 665 5.6e-08 33.4 37.3 4 5 0.00067 0.52 11.1 0.5 31 76 527 572 519 576 0.90 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF333-201 - 665 5.6e-08 33.4 37.3 5 5 0.00047 0.37 11.6 0.8 33 78 585 630 579 633 0.86 zinc-ribbon family zf-C2H2_jaz PF12171.8 27 ZNF333-201 - 665 7.8e-08 32.4 47.7 1 10 0.47 3.6e+02 1.6 1.9 4 24 368 388 365 388 0.87 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF333-201 - 665 7.8e-08 32.4 47.7 2 10 0.27 2.1e+02 2.4 2.0 2 24 394 416 393 416 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF333-201 - 665 7.8e-08 32.4 47.7 3 10 0.04 31 5.0 0.4 2 22 422 442 421 444 0.85 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF333-201 - 665 7.8e-08 32.4 47.7 4 10 0.00063 0.49 10.7 0.1 2 24 450 472 449 472 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF333-201 - 665 7.8e-08 32.4 47.7 5 10 4.8e-05 0.038 14.3 0.3 2 24 478 500 477 500 0.95 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF333-201 - 665 7.8e-08 32.4 47.7 6 10 0.06 47 4.4 0.1 2 22 506 526 505 526 0.91 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF333-201 - 665 7.8e-08 32.4 47.7 7 10 1.6 1.3e+03 -0.1 0.1 3 24 535 556 534 556 0.75 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF333-201 - 665 7.8e-08 32.4 47.7 8 10 0.0016 1.3 9.4 0.0 2 23 562 583 561 585 0.88 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF333-201 - 665 7.8e-08 32.4 47.7 9 10 0.06 47 4.4 0.0 2 24 590 612 589 613 0.90 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF333-201 - 665 7.8e-08 32.4 47.7 10 10 0.011 8.8 6.8 1.0 4 24 620 640 617 641 0.91 Zinc-finger double-stranded RNA-binding Zn-ribbon_8 PF09723.10 40 ZNF333-201 - 665 8e-07 29.1 51.2 1 9 0.22 1.7e+02 2.4 7.5 6 35 366 402 365 404 0.73 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF333-201 - 665 8e-07 29.1 51.2 2 9 0.015 11 6.2 7.2 6 38 394 433 391 435 0.78 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF333-201 - 665 8e-07 29.1 51.2 3 9 0.00016 0.13 12.4 4.4 6 35 422 458 421 461 0.84 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF333-201 - 665 8e-07 29.1 51.2 4 9 0.0012 0.94 9.6 5.3 6 37 450 488 449 490 0.79 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF333-201 - 665 8e-07 29.1 51.2 5 9 0.03 24 5.2 0.6 6 20 478 492 476 500 0.83 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF333-201 - 665 8e-07 29.1 51.2 6 9 1.8e-05 0.014 15.5 0.7 6 38 506 545 505 548 0.85 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF333-201 - 665 8e-07 29.1 51.2 7 9 0.00049 0.38 10.9 3.5 6 34 562 597 561 601 0.79 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF333-201 - 665 8e-07 29.1 51.2 8 9 0.043 33 4.7 5.3 6 35 590 626 588 630 0.78 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF333-201 - 665 8e-07 29.1 51.2 9 9 0.091 71 3.6 0.7 6 18 618 630 617 640 0.81 Zinc ribbon domain # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF333-201.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF333-201.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF333-201.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF333-201.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF333-201.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:04:20 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- KRAB PF01352.27 42 ZNF333-202 - 182 1.4e-13 50.3 0.0 1 1 1.2e-17 2.1e-13 49.7 0.0 1 42 3 43 3 43 0.95 KRAB box # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF333-202.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF333-202.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF333-202.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF333-202.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF333-202.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:04:20 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- KRAB PF01352.27 42 ZNF333-203 - 303 1.2e-39 133.6 0.6 1 2 2.6e-17 4.6e-13 48.6 0.0 1 42 3 43 3 43 0.95 KRAB box KRAB PF01352.27 42 ZNF333-203 - 303 1.2e-39 133.6 0.6 2 2 3.3e-28 6e-24 83.4 0.1 1 42 202 243 202 243 0.99 KRAB box # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF333-203.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF333-203.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF333-203.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF333-203.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF333-203.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:04:21 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF333-204.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF333-204.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF333-204.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF333-204.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF333-204.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:04:21 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF333-205.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF333-205.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF333-205.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF333-205.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF333-205.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:04:21 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF333-206.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF333-206.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF333-206.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF333-206.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF333-206.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:04:22 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- KRAB PF01352.27 42 ZNF333-207 - 281 1e-39 133.9 0.6 1 2 2.3e-17 4.2e-13 48.7 0.0 1 42 3 43 3 43 0.95 KRAB box KRAB PF01352.27 42 ZNF333-207 - 281 1e-39 133.9 0.6 2 2 3e-28 5.4e-24 83.6 0.1 1 42 202 243 202 243 0.99 KRAB box # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF333-207.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF333-207.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF333-207.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF333-207.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF333-207.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:04:22 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZNF333-208 - 476 6.8e-71 231.8 68.1 1 11 0.0031 1.9 9.1 0.1 10 25 172 187 161 188 0.83 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF333-208 - 476 6.8e-71 231.8 68.1 2 11 7.7e-06 0.0046 17.3 1.3 1 26 191 216 191 216 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF333-208 - 476 6.8e-71 231.8 68.1 3 11 8.5e-15 5.1e-12 45.7 1.4 1 26 219 244 219 244 0.97 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF333-208 - 476 6.8e-71 231.8 68.1 4 11 1.3e-11 7.6e-09 35.6 0.2 1 25 247 271 247 272 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF333-208 - 476 6.8e-71 231.8 68.1 5 11 2.6e-12 1.6e-09 37.8 0.5 1 24 275 298 275 300 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF333-208 - 476 6.8e-71 231.8 68.1 6 11 1.2e-08 7.1e-06 26.2 2.1 1 24 303 326 303 328 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF333-208 - 476 6.8e-71 231.8 68.1 7 11 1.3e-07 7.9e-05 22.9 0.4 1 22 331 352 331 355 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF333-208 - 476 6.8e-71 231.8 68.1 8 11 4.8e-11 2.9e-08 33.8 0.4 2 25 360 383 359 384 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF333-208 - 476 6.8e-71 231.8 68.1 9 11 1.1e-09 6.3e-07 29.5 0.3 1 25 387 411 387 412 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF333-208 - 476 6.8e-71 231.8 68.1 10 11 3.7e-06 0.0022 18.3 1.3 2 26 416 440 415 440 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF333-208 - 476 6.8e-71 231.8 68.1 11 11 4.6 2.7e+03 -0.9 0.2 2 10 444 452 443 455 0.82 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZNF333-208 - 476 9.5e-64 208.5 74.9 1 10 1.2e-07 7.2e-05 23.0 1.4 1 23 177 199 177 199 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF333-208 - 476 9.5e-64 208.5 74.9 2 10 1.1e-09 6.3e-07 29.5 1.4 1 23 205 227 205 227 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF333-208 - 476 9.5e-64 208.5 74.9 3 10 2.3e-08 1.4e-05 25.3 1.3 1 23 233 255 233 255 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF333-208 - 476 9.5e-64 208.5 74.9 4 10 3.1e-10 1.9e-07 31.2 0.5 1 23 261 283 261 283 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF333-208 - 476 9.5e-64 208.5 74.9 5 10 1.8e-07 0.0001 22.5 2.6 1 23 289 311 289 311 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF333-208 - 476 9.5e-64 208.5 74.9 6 10 2.2e-08 1.3e-05 25.3 2.2 1 23 317 339 317 339 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF333-208 - 476 9.5e-64 208.5 74.9 7 10 8.1e-08 4.8e-05 23.6 0.5 1 23 345 367 345 367 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF333-208 - 476 9.5e-64 208.5 74.9 8 10 6.1e-09 3.7e-06 27.1 0.3 1 23 373 395 373 395 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF333-208 - 476 9.5e-64 208.5 74.9 9 10 4.8e-08 2.9e-05 24.3 0.3 1 23 401 423 401 423 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF333-208 - 476 9.5e-64 208.5 74.9 10 10 9.8e-08 5.8e-05 23.3 3.7 1 23 429 451 429 451 0.99 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZNF333-208 - 476 1.5e-40 134.4 71.3 1 10 7e-06 0.0042 17.8 1.0 1 23 177 199 177 200 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF333-208 - 476 1.5e-40 134.4 71.3 2 10 1.4e-06 0.00086 19.9 0.9 3 23 207 227 205 228 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF333-208 - 476 1.5e-40 134.4 71.3 3 10 1.7e-05 0.01 16.6 0.8 1 23 233 255 233 256 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF333-208 - 476 1.5e-40 134.4 71.3 4 10 5.6e-07 0.00034 21.2 0.5 1 23 261 283 261 284 0.97 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF333-208 - 476 1.5e-40 134.4 71.3 5 10 1.3e-06 0.00081 20.0 2.4 1 23 289 311 289 312 0.97 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF333-208 - 476 1.5e-40 134.4 71.3 6 10 3.6e-06 0.0022 18.7 1.4 1 23 317 339 317 340 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF333-208 - 476 1.5e-40 134.4 71.3 7 10 4.6e-05 0.028 15.3 0.5 1 23 345 367 345 368 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF333-208 - 476 1.5e-40 134.4 71.3 8 10 8.5e-07 0.00051 20.7 0.4 1 23 373 395 373 396 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF333-208 - 476 1.5e-40 134.4 71.3 9 10 1.4e-05 0.0082 16.9 0.5 1 23 401 423 401 424 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF333-208 - 476 1.5e-40 134.4 71.3 10 10 0.0002 0.12 13.2 2.6 1 23 429 451 429 452 0.96 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF333-208 - 476 2.4e-26 91.2 69.9 1 10 4.2e-05 0.025 14.6 1.0 2 25 177 200 176 202 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF333-208 - 476 2.4e-26 91.2 69.9 2 10 8.7e-06 0.0052 16.7 0.8 2 24 205 227 205 230 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF333-208 - 476 2.4e-26 91.2 69.9 3 10 3.3e-05 0.02 14.9 0.6 2 24 233 255 233 258 0.91 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF333-208 - 476 2.4e-26 91.2 69.9 4 10 0.00024 0.15 12.1 0.4 2 24 261 283 261 286 0.95 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF333-208 - 476 2.4e-26 91.2 69.9 5 10 1.4e-05 0.0082 16.1 3.4 2 25 289 312 289 314 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF333-208 - 476 2.4e-26 91.2 69.9 6 10 3.3e-05 0.02 14.9 0.8 2 24 317 339 317 342 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF333-208 - 476 2.4e-26 91.2 69.9 7 10 7.6e-05 0.045 13.8 0.4 2 24 345 367 344 370 0.95 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF333-208 - 476 2.4e-26 91.2 69.9 8 10 4.8e-05 0.029 14.4 0.7 2 25 373 396 373 398 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF333-208 - 476 2.4e-26 91.2 69.9 9 10 0.014 8.7 6.5 0.4 2 13 401 412 401 425 0.73 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF333-208 - 476 2.4e-26 91.2 69.9 10 10 0.00046 0.28 11.2 2.8 2 24 429 451 429 453 0.97 C2H2-type zinc finger KRAB PF01352.27 42 ZNF333-208 - 476 7e-24 83.2 0.1 1 1 1.9e-26 1.1e-23 82.6 0.1 1 42 13 54 13 54 0.99 KRAB box zf-C2H2_jaz PF12171.8 27 ZNF333-208 - 476 1.8e-09 37.6 47.7 1 10 0.41 2.5e+02 2.1 1.9 4 24 179 199 176 199 0.87 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF333-208 - 476 1.8e-09 37.6 47.7 2 10 0.24 1.4e+02 2.9 2.0 2 24 205 227 204 227 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF333-208 - 476 1.8e-09 37.6 47.7 3 10 0.036 21 5.5 0.4 2 22 233 253 232 255 0.85 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF333-208 - 476 1.8e-09 37.6 47.7 4 10 0.00056 0.33 11.3 0.1 2 24 261 283 260 283 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF333-208 - 476 1.8e-09 37.6 47.7 5 10 4.3e-05 0.025 14.8 0.3 2 24 289 311 288 311 0.95 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF333-208 - 476 1.8e-09 37.6 47.7 6 10 0.053 32 5.0 0.1 2 22 317 337 316 337 0.91 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF333-208 - 476 1.8e-09 37.6 47.7 7 10 1.5 8.7e+02 0.4 0.1 3 24 346 367 345 367 0.75 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF333-208 - 476 1.8e-09 37.6 47.7 8 10 0.0014 0.86 10.0 0.0 2 23 373 394 372 396 0.88 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF333-208 - 476 1.8e-09 37.6 47.7 9 10 0.053 32 5.0 0.0 2 24 401 423 400 424 0.90 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF333-208 - 476 1.8e-09 37.6 47.7 10 10 0.0099 5.9 7.3 1.0 4 24 431 451 428 452 0.91 Zinc-finger double-stranded RNA-binding zinc_ribbon_15 PF17032.5 86 ZNF333-208 - 476 8.8e-09 36.0 37.7 1 5 0.0079 4.7 8.0 6.0 30 77 169 216 146 220 0.83 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF333-208 - 476 8.8e-09 36.0 37.7 2 5 0.00066 0.4 11.5 1.1 32 77 227 272 222 276 0.86 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF333-208 - 476 8.8e-09 36.0 37.7 3 5 0.0002 0.12 13.1 1.9 32 76 283 327 278 332 0.87 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF333-208 - 476 8.8e-09 36.0 37.7 4 5 0.00063 0.38 11.5 0.5 31 76 338 383 334 387 0.90 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF333-208 - 476 8.8e-09 36.0 37.7 5 5 0.0004 0.24 12.2 0.8 33 78 396 441 390 444 0.86 zinc-ribbon family Zn-ribbon_8 PF09723.10 40 ZNF333-208 - 476 8.9e-08 32.1 52.1 1 9 0.2 1.2e+02 2.9 7.6 6 35 177 213 176 216 0.73 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF333-208 - 476 8.9e-08 32.1 52.1 2 9 0.0075 4.5 7.5 6.5 6 38 205 244 203 246 0.78 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF333-208 - 476 8.9e-08 32.1 52.1 3 9 0.00012 0.071 13.2 4.1 6 35 233 269 232 272 0.84 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF333-208 - 476 8.9e-08 32.1 52.1 4 9 0.001 0.6 10.3 5.2 6 37 261 299 259 300 0.79 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF333-208 - 476 8.9e-08 32.1 52.1 5 9 0.027 16 5.7 0.5 6 20 289 303 288 311 0.82 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF333-208 - 476 8.9e-08 32.1 52.1 6 9 1.8e-05 0.011 15.8 0.9 6 38 317 356 316 358 0.85 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF333-208 - 476 8.9e-08 32.1 52.1 7 9 0.00053 0.32 11.2 3.9 6 34 373 408 372 412 0.79 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF333-208 - 476 8.9e-08 32.1 52.1 8 9 0.052 31 4.8 5.7 6 35 401 437 400 440 0.77 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF333-208 - 476 8.9e-08 32.1 52.1 9 9 0.08 48 4.2 0.7 6 18 429 441 428 451 0.81 Zinc ribbon domain zf-C2HE PF16278.5 64 ZNF333-208 - 476 1.2e-07 32.1 57.5 1 10 0.42 2.5e+02 2.2 0.9 36 57 175 195 164 202 0.73 C2HE / C2H2 / C2HC zinc-binding finger zf-C2HE PF16278.5 64 ZNF333-208 - 476 1.2e-07 32.1 57.5 2 10 0.11 63 4.1 1.7 35 62 202 228 191 230 0.83 C2HE / C2H2 / C2HC zinc-binding finger zf-C2HE PF16278.5 64 ZNF333-208 - 476 1.2e-07 32.1 57.5 3 10 0.00075 0.45 11.0 1.0 36 52 231 247 228 251 0.91 C2HE / C2H2 / C2HC zinc-binding finger zf-C2HE PF16278.5 64 ZNF333-208 - 476 1.2e-07 32.1 57.5 4 10 0.0058 3.5 8.2 0.2 35 62 258 284 250 286 0.89 C2HE / C2H2 / C2HC zinc-binding finger zf-C2HE PF16278.5 64 ZNF333-208 - 476 1.2e-07 32.1 57.5 5 10 1.4e-05 0.0086 16.5 1.5 36 63 287 313 284 314 0.92 C2HE / C2H2 / C2HC zinc-binding finger zf-C2HE PF16278.5 64 ZNF333-208 - 476 1.2e-07 32.1 57.5 6 10 0.021 13 6.3 0.6 35 57 314 335 312 341 0.79 C2HE / C2H2 / C2HC zinc-binding finger zf-C2HE PF16278.5 64 ZNF333-208 - 476 1.2e-07 32.1 57.5 7 10 0.0015 0.88 10.1 0.2 39 62 346 368 342 370 0.92 C2HE / C2H2 / C2HC zinc-binding finger zf-C2HE PF16278.5 64 ZNF333-208 - 476 1.2e-07 32.1 57.5 8 10 0.19 1.2e+02 3.3 0.1 36 61 371 395 368 398 0.84 C2HE / C2H2 / C2HC zinc-binding finger zf-C2HE PF16278.5 64 ZNF333-208 - 476 1.2e-07 32.1 57.5 9 10 0.044 26 5.4 0.2 34 61 397 423 383 425 0.68 C2HE / C2H2 / C2HC zinc-binding finger zf-C2HE PF16278.5 64 ZNF333-208 - 476 1.2e-07 32.1 57.5 10 10 0.17 1e+02 3.5 0.7 36 49 427 439 424 452 0.75 C2HE / C2H2 / C2HC zinc-binding finger zf_UBZ PF18439.1 32 ZNF333-208 - 476 2.5e-07 30.1 38.8 1 10 0.089 53 3.5 0.2 2 13 176 187 175 196 0.78 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF333-208 - 476 2.5e-07 30.1 38.8 2 10 0.038 22 4.7 0.7 2 13 204 215 203 223 0.84 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF333-208 - 476 2.5e-07 30.1 38.8 3 10 0.017 10 5.8 0.1 3 12 233 242 231 251 0.88 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF333-208 - 476 2.5e-07 30.1 38.8 4 10 0.0088 5.2 6.7 0.1 3 20 261 279 259 279 0.85 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF333-208 - 476 2.5e-07 30.1 38.8 5 10 0.0033 2 8.1 0.3 3 20 289 307 287 308 0.86 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF333-208 - 476 2.5e-07 30.1 38.8 6 10 0.042 25 4.6 0.1 3 14 317 328 315 335 0.84 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF333-208 - 476 2.5e-07 30.1 38.8 7 10 0.06 36 4.1 0.0 3 16 345 359 343 364 0.75 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF333-208 - 476 2.5e-07 30.1 38.8 8 10 0.0017 1 9.0 0.1 3 17 373 388 371 392 0.81 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF333-208 - 476 2.5e-07 30.1 38.8 9 10 0.075 45 3.8 0.1 3 12 401 410 399 415 0.84 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF333-208 - 476 2.5e-07 30.1 38.8 10 10 0.21 1.3e+02 2.3 0.2 3 15 429 441 427 448 0.79 Ubiquitin-Binding Zinc Finger # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF333-208.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF333-208.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF333-208.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF333-208.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF333-208.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:04:22 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- KRAB PF01352.27 42 ZNF333-209 - 166 1.2e-13 50.5 0.0 1 1 9.9e-18 1.8e-13 49.9 0.0 1 42 3 43 3 43 0.95 KRAB box # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF333-209.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF333-209.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF333-209.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF333-209.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF333-209.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:04:23 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- KRAB PF01352.27 42 ZNF333-210 - 128 7.5e-14 51.1 0.0 1 1 6.1e-18 1.1e-13 50.6 0.0 1 42 3 43 3 43 0.95 KRAB box # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF333-210.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF333-210.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF333-210.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF333-210.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF333-210.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:04:23 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZNF334-201 - 680 2.5e-92 299.5 125.5 1 19 9 1.8e+04 -3.6 0.1 13 17 132 136 130 137 0.78 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF334-201 - 680 2.5e-92 299.5 125.5 2 19 0.36 7.2e+02 0.9 0.4 4 16 170 182 170 189 0.90 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF334-201 - 680 2.5e-92 299.5 125.5 3 19 0.64 1.3e+03 0.1 0.0 14 24 208 218 195 220 0.83 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF334-201 - 680 2.5e-92 299.5 125.5 4 19 0.0063 12 6.5 0.6 12 25 234 247 228 248 0.80 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF334-201 - 680 2.5e-92 299.5 125.5 5 19 2.7e-10 5.4e-07 29.8 0.3 5 24 255 274 252 275 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF334-201 - 680 2.5e-92 299.5 125.5 6 19 1.3e-12 2.5e-09 37.1 0.7 1 24 279 302 279 303 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF334-201 - 680 2.5e-92 299.5 125.5 7 19 5e-08 0.0001 22.6 0.2 2 24 308 330 307 332 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF334-201 - 680 2.5e-92 299.5 125.5 8 19 2.5e-11 5e-08 33.0 0.5 1 25 335 359 335 360 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF334-201 - 680 2.5e-92 299.5 125.5 9 19 1e-07 0.0002 21.6 2.9 2 24 364 386 363 388 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF334-201 - 680 2.5e-92 299.5 125.5 10 19 8.8e-12 1.7e-08 34.5 1.7 1 24 391 414 391 416 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF334-201 - 680 2.5e-92 299.5 125.5 11 19 9.7e-11 1.9e-07 31.2 0.5 1 22 419 440 419 441 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF334-201 - 680 2.5e-92 299.5 125.5 12 19 4.5e-07 0.0009 19.6 2.6 1 24 447 470 447 472 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF334-201 - 680 2.5e-92 299.5 125.5 13 19 0.00044 0.89 10.1 0.1 2 21 476 508 475 510 0.80 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF334-201 - 680 2.5e-92 299.5 125.5 14 19 0.61 1.2e+03 0.2 0.0 10 18 512 520 508 521 0.86 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF334-201 - 680 2.5e-92 299.5 125.5 15 19 0.0013 2.6 8.6 0.1 5 24 531 553 529 553 0.75 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF334-201 - 680 2.5e-92 299.5 125.5 16 19 2.7e-10 5.5e-07 29.7 1.5 1 24 558 581 558 581 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF334-201 - 680 2.5e-92 299.5 125.5 17 19 5.9e-10 1.2e-06 28.7 4.4 2 24 587 609 586 611 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF334-201 - 680 2.5e-92 299.5 125.5 18 19 1.3e-10 2.6e-07 30.8 1.0 1 25 614 638 614 639 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF334-201 - 680 2.5e-92 299.5 125.5 19 19 2.1e-10 4.1e-07 30.1 3.8 2 26 643 667 642 667 0.94 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZNF334-201 - 680 9.6e-63 205.3 149.4 1 18 1.4 2.8e+03 -0.9 0.0 9 21 189 201 187 202 0.82 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF334-201 - 680 9.6e-63 205.3 149.4 2 18 0.82 1.6e+03 -0.1 0.2 5 10 213 218 212 222 0.80 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF334-201 - 680 9.6e-63 205.3 149.4 3 18 1.9e-07 0.00037 20.8 1.1 2 23 238 259 238 259 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF334-201 - 680 9.6e-63 205.3 149.4 4 18 8.6e-08 0.00017 21.8 2.7 1 23 265 287 265 287 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF334-201 - 680 9.6e-63 205.3 149.4 5 18 6.5e-08 0.00013 22.2 0.2 1 23 293 315 293 315 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF334-201 - 680 9.6e-63 205.3 149.4 6 18 4.3e-08 8.6e-05 22.8 0.8 1 23 321 343 321 343 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF334-201 - 680 9.6e-63 205.3 149.4 7 18 2.2e-08 4.3e-05 23.7 0.6 1 23 349 371 349 371 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF334-201 - 680 9.6e-63 205.3 149.4 8 18 4.6e-06 0.0092 16.4 1.5 2 23 378 399 378 399 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF334-201 - 680 9.6e-63 205.3 149.4 9 18 2.8e-05 0.055 13.9 2.8 1 23 405 427 405 427 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF334-201 - 680 9.6e-63 205.3 149.4 10 18 1.4e-06 0.0027 18.1 0.8 1 23 433 455 433 455 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF334-201 - 680 9.6e-63 205.3 149.4 11 18 7.2e-08 0.00014 22.1 5.7 1 23 461 483 461 483 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF334-201 - 680 9.6e-63 205.3 149.4 12 18 9 1.8e+04 -3.4 0.4 3 8 504 509 503 510 0.81 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF334-201 - 680 9.6e-63 205.3 149.4 13 18 0.047 94 3.8 0.3 8 22 524 538 517 538 0.81 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF334-201 - 680 9.6e-63 205.3 149.4 14 18 2.4e-08 4.7e-05 23.6 5.4 1 23 544 566 544 566 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF334-201 - 680 9.6e-63 205.3 149.4 15 18 8.5e-08 0.00017 21.9 3.6 1 23 572 594 572 594 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF334-201 - 680 9.6e-63 205.3 149.4 16 18 4.9e-08 9.8e-05 22.6 4.9 1 23 600 622 600 622 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF334-201 - 680 9.6e-63 205.3 149.4 17 18 2.4e-07 0.00048 20.4 0.6 1 23 628 650 628 650 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF334-201 - 680 9.6e-63 205.3 149.4 18 18 8.9e-07 0.0018 18.7 5.1 1 23 656 678 656 678 0.98 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZNF334-201 - 680 6.3e-34 113.7 139.1 1 18 5 1e+04 -2.0 0.0 14 23 166 175 164 176 0.80 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF334-201 - 680 6.3e-34 113.7 139.1 2 18 5.4 1.1e+04 -2.1 0.1 5 11 213 219 212 223 0.80 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF334-201 - 680 6.3e-34 113.7 139.1 3 18 9e-05 0.18 12.7 0.6 2 23 238 259 237 260 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF334-201 - 680 6.3e-34 113.7 139.1 4 18 2e-05 0.039 14.8 1.5 1 23 265 287 265 288 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF334-201 - 680 6.3e-34 113.7 139.1 5 18 6.1e-06 0.012 16.4 0.1 1 23 293 315 293 316 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF334-201 - 680 6.3e-34 113.7 139.1 6 18 2.8e-06 0.0056 17.4 0.8 1 23 321 343 321 344 0.97 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF334-201 - 680 6.3e-34 113.7 139.1 7 18 1.8e-05 0.035 14.9 0.8 1 23 349 371 349 372 0.89 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF334-201 - 680 6.3e-34 113.7 139.1 8 18 1.2e-05 0.024 15.5 1.4 2 23 378 399 377 400 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF334-201 - 680 6.3e-34 113.7 139.1 9 18 6.9e-06 0.014 16.2 3.0 1 23 405 427 405 428 0.97 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF334-201 - 680 6.3e-34 113.7 139.1 10 18 3.1e-05 0.062 14.2 1.2 1 23 433 455 433 456 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF334-201 - 680 6.3e-34 113.7 139.1 11 18 0.0013 2.5 9.2 4.5 1 23 461 483 461 484 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF334-201 - 680 6.3e-34 113.7 139.1 12 18 1.2 2.3e+03 -0.1 0.2 3 15 504 515 503 518 0.70 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF334-201 - 680 6.3e-34 113.7 139.1 13 18 2 4e+03 -0.8 0.2 1 22 517 538 517 539 0.75 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF334-201 - 680 6.3e-34 113.7 139.1 14 18 5.7e-06 0.011 16.5 3.9 1 23 544 566 544 567 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF334-201 - 680 6.3e-34 113.7 139.1 15 18 4.6e-05 0.091 13.6 3.4 1 23 572 594 572 595 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF334-201 - 680 6.3e-34 113.7 139.1 16 18 8.3e-05 0.17 12.8 4.2 1 23 600 622 600 623 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF334-201 - 680 6.3e-34 113.7 139.1 17 18 3.9e-05 0.078 13.9 0.5 1 23 628 650 628 651 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF334-201 - 680 6.3e-34 113.7 139.1 18 18 0.0013 2.6 9.1 4.5 1 23 656 678 656 679 0.94 C2H2-type zinc finger KRAB PF01352.27 42 ZNF334-201 - 680 5.3e-25 86.8 0.5 1 1 4.5e-28 8.9e-25 86.1 0.5 1 42 9 50 9 50 0.99 KRAB box zf-C2H2_6 PF13912.6 27 ZNF334-201 - 680 1.4e-10 40.9 140.8 1 17 2.7 5.3e+03 -2.4 0.3 18 25 169 176 168 177 0.87 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF334-201 - 680 1.4e-10 40.9 140.8 2 17 2.1 4.1e+03 -2.1 0.2 6 11 213 218 212 218 0.87 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF334-201 - 680 1.4e-10 40.9 140.8 3 17 0.0058 12 6.1 0.2 3 13 238 248 238 259 0.89 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF334-201 - 680 1.4e-10 40.9 140.8 4 17 0.0017 3.3 7.8 0.3 2 24 265 287 265 290 0.92 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF334-201 - 680 1.4e-10 40.9 140.8 5 17 0.0015 3 7.9 0.3 2 11 293 302 293 315 0.91 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF334-201 - 680 1.4e-10 40.9 140.8 6 17 2.6e-05 0.052 13.6 1.3 2 24 321 343 320 346 0.91 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF334-201 - 680 1.4e-10 40.9 140.8 7 17 0.00045 0.89 9.6 1.2 2 25 349 372 349 374 0.83 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF334-201 - 680 1.4e-10 40.9 140.8 8 17 0.00016 0.32 11.0 2.0 3 24 378 399 378 402 0.90 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF334-201 - 680 1.4e-10 40.9 140.8 9 17 1.9e-06 0.0039 17.2 2.8 2 24 405 427 405 430 0.96 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF334-201 - 680 1.4e-10 40.9 140.8 10 17 0.00016 0.33 11.0 2.0 2 26 433 457 433 458 0.96 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF334-201 - 680 1.4e-10 40.9 140.8 11 17 0.11 2.2e+02 2.0 4.7 2 11 461 470 460 473 0.90 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF334-201 - 680 1.4e-10 40.9 140.8 12 17 1.1 2.1e+03 -1.2 1.1 3 9 503 509 503 509 0.86 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF334-201 - 680 1.4e-10 40.9 140.8 13 17 0.0032 6.3 6.9 5.0 2 24 544 566 544 569 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF334-201 - 680 1.4e-10 40.9 140.8 14 17 0.0047 9.3 6.4 3.8 2 11 572 581 572 582 0.97 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF334-201 - 680 1.4e-10 40.9 140.8 15 17 0.0042 8.3 6.5 4.2 2 11 600 609 600 613 0.98 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF334-201 - 680 1.4e-10 40.9 140.8 16 17 1.9e-05 0.038 14.0 0.5 2 24 628 650 628 653 0.92 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF334-201 - 680 1.4e-10 40.9 140.8 17 17 0.012 25 5.0 2.4 2 12 656 666 656 671 0.96 C2H2-type zinc finger # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF334-201.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF334-201.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF334-201.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF334-201.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF334-201.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:04:24 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZNF334-202 - 642 1.5e-92 300.2 126.4 1 19 9.7 1.7e+04 -3.5 0.1 13 17 94 98 92 99 0.78 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF334-202 - 642 1.5e-92 300.2 126.4 2 19 0.47 8.5e+02 0.7 0.7 4 16 132 144 132 150 0.90 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF334-202 - 642 1.5e-92 300.2 126.4 3 19 0.66 1.2e+03 0.2 0.0 14 24 170 180 157 182 0.83 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF334-202 - 642 1.5e-92 300.2 126.4 4 19 0.0065 12 6.6 0.6 12 25 196 209 190 210 0.80 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF334-202 - 642 1.5e-92 300.2 126.4 5 19 2.8e-10 5.1e-07 29.8 0.3 5 24 217 236 214 237 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF334-202 - 642 1.5e-92 300.2 126.4 6 19 1.3e-12 2.3e-09 37.2 0.7 1 24 241 264 241 265 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF334-202 - 642 1.5e-92 300.2 126.4 7 19 5.2e-08 9.4e-05 22.7 0.2 2 24 270 292 269 294 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF334-202 - 642 1.5e-92 300.2 126.4 8 19 2.6e-11 4.6e-08 33.1 0.5 1 25 297 321 297 322 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF334-202 - 642 1.5e-92 300.2 126.4 9 19 1.1e-07 0.00019 21.7 2.9 2 24 326 348 325 350 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF334-202 - 642 1.5e-92 300.2 126.4 10 19 9.1e-12 1.6e-08 34.6 1.7 1 24 353 376 353 378 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF334-202 - 642 1.5e-92 300.2 126.4 11 19 1e-10 1.8e-07 31.2 0.5 1 22 381 402 381 403 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF334-202 - 642 1.5e-92 300.2 126.4 12 19 4.7e-07 0.00084 19.7 2.6 1 24 409 432 409 434 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF334-202 - 642 1.5e-92 300.2 126.4 13 19 0.00046 0.83 10.2 0.1 2 21 438 470 437 472 0.80 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF334-202 - 642 1.5e-92 300.2 126.4 14 19 0.64 1.1e+03 0.3 0.0 10 18 474 482 470 483 0.86 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF334-202 - 642 1.5e-92 300.2 126.4 15 19 0.0013 2.4 8.7 0.1 5 24 493 515 491 515 0.75 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF334-202 - 642 1.5e-92 300.2 126.4 16 19 2.8e-10 5.1e-07 29.8 1.5 1 24 520 543 520 543 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF334-202 - 642 1.5e-92 300.2 126.4 17 19 6.1e-10 1.1e-06 28.8 4.4 2 24 549 571 548 573 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF334-202 - 642 1.5e-92 300.2 126.4 18 19 1.4e-10 2.4e-07 30.8 1.0 1 25 576 600 576 601 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF334-202 - 642 1.5e-92 300.2 126.4 19 19 2.2e-10 3.9e-07 30.2 3.8 2 26 605 629 604 629 0.94 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZNF334-202 - 642 3.2e-63 206.8 149.4 1 18 1.4 2.6e+03 -0.8 0.0 9 21 151 163 149 164 0.82 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF334-202 - 642 3.2e-63 206.8 149.4 2 18 0.86 1.5e+03 -0.1 0.2 5 10 175 180 174 184 0.80 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF334-202 - 642 3.2e-63 206.8 149.4 3 18 1.9e-07 0.00035 20.9 1.1 2 23 200 221 200 221 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF334-202 - 642 3.2e-63 206.8 149.4 4 18 8.9e-08 0.00016 21.9 2.7 1 23 227 249 227 249 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF334-202 - 642 3.2e-63 206.8 149.4 5 18 6.7e-08 0.00012 22.3 0.2 1 23 255 277 255 277 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF334-202 - 642 3.2e-63 206.8 149.4 6 18 4.5e-08 8.1e-05 22.9 0.8 1 23 283 305 283 305 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF334-202 - 642 3.2e-63 206.8 149.4 7 18 2.3e-08 4e-05 23.8 0.6 1 23 311 333 311 333 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF334-202 - 642 3.2e-63 206.8 149.4 8 18 4.8e-06 0.0087 16.5 1.5 2 23 340 361 340 361 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF334-202 - 642 3.2e-63 206.8 149.4 9 18 2.9e-05 0.052 14.0 2.8 1 23 367 389 367 389 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF334-202 - 642 3.2e-63 206.8 149.4 10 18 1.4e-06 0.0026 18.1 0.8 1 23 395 417 395 417 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF334-202 - 642 3.2e-63 206.8 149.4 11 18 7.5e-08 0.00013 22.2 5.7 1 23 423 445 423 445 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF334-202 - 642 3.2e-63 206.8 149.4 12 18 9.6 1.7e+04 -3.4 0.4 3 8 466 471 465 472 0.81 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF334-202 - 642 3.2e-63 206.8 149.4 13 18 0.049 88 3.9 0.3 8 22 486 500 479 500 0.81 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF334-202 - 642 3.2e-63 206.8 149.4 14 18 2.5e-08 4.4e-05 23.7 5.4 1 23 506 528 506 528 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF334-202 - 642 3.2e-63 206.8 149.4 15 18 8.8e-08 0.00016 21.9 3.6 1 23 534 556 534 556 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF334-202 - 642 3.2e-63 206.8 149.4 16 18 5.1e-08 9.2e-05 22.7 4.9 1 23 562 584 562 584 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF334-202 - 642 3.2e-63 206.8 149.4 17 18 2.5e-07 0.00045 20.5 0.6 1 23 590 612 590 612 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF334-202 - 642 3.2e-63 206.8 149.4 18 18 9.2e-07 0.0017 18.7 5.1 1 23 618 640 618 640 0.98 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZNF334-202 - 642 2.1e-34 115.2 139.0 1 18 5.2 9.4e+03 -2.0 0.0 14 23 128 137 126 138 0.80 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF334-202 - 642 2.1e-34 115.2 139.0 2 18 5.7 1e+04 -2.1 0.1 5 11 175 181 174 185 0.80 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF334-202 - 642 2.1e-34 115.2 139.0 3 18 9.3e-05 0.17 12.8 0.6 2 23 200 221 199 222 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF334-202 - 642 2.1e-34 115.2 139.0 4 18 2e-05 0.036 14.9 1.5 1 23 227 249 227 250 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF334-202 - 642 2.1e-34 115.2 139.0 5 18 6.3e-06 0.011 16.5 0.1 1 23 255 277 255 278 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF334-202 - 642 2.1e-34 115.2 139.0 6 18 2.9e-06 0.0053 17.5 0.8 1 23 283 305 283 306 0.97 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF334-202 - 642 2.1e-34 115.2 139.0 7 18 1.8e-05 0.033 15.0 0.8 1 23 311 333 311 334 0.89 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF334-202 - 642 2.1e-34 115.2 139.0 8 18 1.2e-05 0.022 15.6 1.4 2 23 340 361 339 362 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF334-202 - 642 2.1e-34 115.2 139.0 9 18 7.1e-06 0.013 16.3 3.0 1 23 367 389 367 390 0.97 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF334-202 - 642 2.1e-34 115.2 139.0 10 18 3.2e-05 0.058 14.3 1.2 1 23 395 417 395 418 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF334-202 - 642 2.1e-34 115.2 139.0 11 18 0.0013 2.4 9.2 4.5 1 23 423 445 423 446 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF334-202 - 642 2.1e-34 115.2 139.0 12 18 1.2 2.2e+03 0.0 0.2 3 15 466 477 465 480 0.70 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF334-202 - 642 2.1e-34 115.2 139.0 13 18 2.1 3.8e+03 -0.7 0.2 1 22 479 500 479 501 0.75 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF334-202 - 642 2.1e-34 115.2 139.0 14 18 5.9e-06 0.011 16.6 3.9 1 23 506 528 506 529 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF334-202 - 642 2.1e-34 115.2 139.0 15 18 4.7e-05 0.085 13.7 3.4 1 23 534 556 534 557 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF334-202 - 642 2.1e-34 115.2 139.0 16 18 8.6e-05 0.15 12.9 4.2 1 23 562 584 562 585 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF334-202 - 642 2.1e-34 115.2 139.0 17 18 4.1e-05 0.073 14.0 0.5 1 23 590 612 590 613 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF334-202 - 642 2.1e-34 115.2 139.0 18 18 0.0014 2.4 9.2 4.5 1 23 618 640 618 641 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF334-202 - 642 6.2e-09 35.6 147.4 1 18 2.8 5e+03 -2.3 0.3 18 25 131 138 130 139 0.87 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF334-202 - 642 6.2e-09 35.6 147.4 2 18 2.2 3.9e+03 -2.0 0.2 6 11 175 180 174 180 0.87 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF334-202 - 642 6.2e-09 35.6 147.4 3 18 0.0061 11 6.2 0.2 3 13 200 210 200 221 0.89 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF334-202 - 642 6.2e-09 35.6 147.4 4 18 0.0017 3.1 7.9 0.3 2 24 227 249 227 252 0.92 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF334-202 - 642 6.2e-09 35.6 147.4 5 18 0.0016 2.8 8.0 0.3 2 11 255 264 255 277 0.91 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF334-202 - 642 6.2e-09 35.6 147.4 6 18 2.7e-05 0.049 13.7 1.3 2 24 283 305 282 308 0.91 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF334-202 - 642 6.2e-09 35.6 147.4 7 18 0.00046 0.83 9.7 1.2 2 25 311 334 311 336 0.83 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF334-202 - 642 6.2e-09 35.6 147.4 8 18 0.00017 0.3 11.1 2.0 3 24 340 361 340 364 0.90 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF334-202 - 642 6.2e-09 35.6 147.4 9 18 2e-06 0.0036 17.3 2.8 2 24 367 389 367 392 0.96 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF334-202 - 642 6.2e-09 35.6 147.4 10 18 0.00017 0.31 11.1 2.0 2 26 395 419 395 420 0.96 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF334-202 - 642 6.2e-09 35.6 147.4 11 18 0.12 2.1e+02 2.1 4.7 2 11 423 432 422 435 0.90 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF334-202 - 642 6.2e-09 35.6 147.4 12 18 1.1 2e+03 -1.1 1.1 3 9 465 471 465 471 0.86 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF334-202 - 642 6.2e-09 35.6 147.4 13 18 0.0033 5.9 7.0 5.0 2 24 506 528 506 531 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF334-202 - 642 6.2e-09 35.6 147.4 14 18 0.0049 8.7 6.5 3.8 2 11 534 543 534 544 0.97 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF334-202 - 642 6.2e-09 35.6 147.4 15 18 0.0044 7.8 6.6 4.2 2 11 562 571 562 575 0.98 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF334-202 - 642 6.2e-09 35.6 147.4 16 18 2e-05 0.036 14.1 0.5 2 24 590 612 590 615 0.92 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF334-202 - 642 6.2e-09 35.6 147.4 17 18 0.0089 16 5.6 1.9 2 12 618 628 618 632 0.95 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF334-202 - 642 6.2e-09 35.6 147.4 18 18 10 1.8e+04 -4.4 0.7 20 25 636 641 635 642 0.84 C2H2-type zinc finger # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF334-202.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF334-202.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF334-202.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF334-202.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF334-202.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:04:24 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZNF334-203 - 703 5.8e-92 298.4 125.7 1 19 9 1.8e+04 -3.6 0.1 13 17 155 159 153 160 0.78 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF334-203 - 703 5.8e-92 298.4 125.7 2 19 0.38 7.5e+02 0.8 0.4 4 16 193 205 193 212 0.90 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF334-203 - 703 5.8e-92 298.4 125.7 3 19 0.66 1.3e+03 0.1 0.0 14 24 231 241 218 243 0.83 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF334-203 - 703 5.8e-92 298.4 125.7 4 19 0.0065 13 6.4 0.6 12 25 257 270 251 271 0.80 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF334-203 - 703 5.8e-92 298.4 125.7 5 19 2.8e-10 5.6e-07 29.7 0.3 5 24 278 297 275 298 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF334-203 - 703 5.8e-92 298.4 125.7 6 19 1.3e-12 2.6e-09 37.1 0.7 1 24 302 325 302 326 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF334-203 - 703 5.8e-92 298.4 125.7 7 19 5.2e-08 0.0001 22.5 0.2 2 24 331 353 330 355 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF334-203 - 703 5.8e-92 298.4 125.7 8 19 2.6e-11 5.2e-08 33.0 0.5 1 25 358 382 358 383 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF334-203 - 703 5.8e-92 298.4 125.7 9 19 1.1e-07 0.00021 21.6 2.9 2 24 387 409 386 411 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF334-203 - 703 5.8e-92 298.4 125.7 10 19 9.1e-12 1.8e-08 34.4 1.7 1 24 414 437 414 439 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF334-203 - 703 5.8e-92 298.4 125.7 11 19 1e-10 2e-07 31.1 0.5 1 22 442 463 442 464 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF334-203 - 703 5.8e-92 298.4 125.7 12 19 4.7e-07 0.00094 19.5 2.6 1 24 470 493 470 495 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF334-203 - 703 5.8e-92 298.4 125.7 13 19 0.00047 0.93 10.0 0.1 2 21 499 531 498 533 0.80 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF334-203 - 703 5.8e-92 298.4 125.7 14 19 0.63 1.3e+03 0.1 0.0 10 18 535 543 531 544 0.86 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF334-203 - 703 5.8e-92 298.4 125.7 15 19 0.0013 2.7 8.6 0.1 5 24 554 576 552 576 0.75 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF334-203 - 703 5.8e-92 298.4 125.7 16 19 2.8e-10 5.7e-07 29.7 1.5 1 24 581 604 581 604 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF334-203 - 703 5.8e-92 298.4 125.7 17 19 6.1e-10 1.2e-06 28.6 4.4 2 24 610 632 609 634 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF334-203 - 703 5.8e-92 298.4 125.7 18 19 1.4e-10 2.7e-07 30.7 1.0 1 25 637 661 637 662 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF334-203 - 703 5.8e-92 298.4 125.7 19 19 2.2e-10 4.3e-07 30.1 3.8 2 26 666 690 665 690 0.94 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZNF334-203 - 703 1.7e-62 204.5 149.4 1 18 1.4 2.9e+03 -0.9 0.0 9 21 212 224 210 225 0.82 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF334-203 - 703 1.7e-62 204.5 149.4 2 18 0.85 1.7e+03 -0.2 0.2 5 10 236 241 235 245 0.80 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF334-203 - 703 1.7e-62 204.5 149.4 3 18 1.9e-07 0.00039 20.7 1.1 2 23 261 282 261 282 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF334-203 - 703 1.7e-62 204.5 149.4 4 18 8.9e-08 0.00018 21.8 2.7 1 23 288 310 288 310 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF334-203 - 703 1.7e-62 204.5 149.4 5 18 6.7e-08 0.00013 22.2 0.2 1 23 316 338 316 338 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF334-203 - 703 1.7e-62 204.5 149.4 6 18 4.5e-08 9e-05 22.7 0.8 1 23 344 366 344 366 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF334-203 - 703 1.7e-62 204.5 149.4 7 18 2.3e-08 4.5e-05 23.7 0.6 1 23 372 394 372 394 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF334-203 - 703 1.7e-62 204.5 149.4 8 18 4.8e-06 0.0096 16.3 1.5 2 23 401 422 401 422 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF334-203 - 703 1.7e-62 204.5 149.4 9 18 2.9e-05 0.057 13.9 2.8 1 23 428 450 428 450 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF334-203 - 703 1.7e-62 204.5 149.4 10 18 1.4e-06 0.0028 18.0 0.8 1 23 456 478 456 478 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF334-203 - 703 1.7e-62 204.5 149.4 11 18 7.5e-08 0.00015 22.0 5.7 1 23 484 506 484 506 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF334-203 - 703 1.7e-62 204.5 149.4 12 18 9 1.8e+04 -3.5 0.4 3 8 527 532 526 533 0.81 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF334-203 - 703 1.7e-62 204.5 149.4 13 18 0.049 98 3.7 0.3 8 22 547 561 540 561 0.81 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF334-203 - 703 1.7e-62 204.5 149.4 14 18 2.5e-08 4.9e-05 23.6 5.4 1 23 567 589 567 589 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF334-203 - 703 1.7e-62 204.5 149.4 15 18 8.8e-08 0.00018 21.8 3.6 1 23 595 617 595 617 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF334-203 - 703 1.7e-62 204.5 149.4 16 18 5.1e-08 0.0001 22.5 4.9 1 23 623 645 623 645 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF334-203 - 703 1.7e-62 204.5 149.4 17 18 2.5e-07 0.0005 20.4 0.6 1 23 651 673 651 673 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF334-203 - 703 1.7e-62 204.5 149.4 18 18 9.2e-07 0.0018 18.6 5.1 1 23 679 701 679 701 0.98 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZNF334-203 - 703 1.1e-33 113.0 139.1 1 18 5.2 1e+04 -2.1 0.0 14 23 189 198 187 199 0.80 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF334-203 - 703 1.1e-33 113.0 139.1 2 18 5.6 1.1e+04 -2.2 0.1 5 11 236 242 235 246 0.80 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF334-203 - 703 1.1e-33 113.0 139.1 3 18 9.3e-05 0.19 12.7 0.6 2 23 261 282 260 283 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF334-203 - 703 1.1e-33 113.0 139.1 4 18 2e-05 0.041 14.7 1.5 1 23 288 310 288 311 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF334-203 - 703 1.1e-33 113.0 139.1 5 18 6.3e-06 0.013 16.3 0.1 1 23 316 338 316 339 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF334-203 - 703 1.1e-33 113.0 139.1 6 18 2.9e-06 0.0059 17.4 0.8 1 23 344 366 344 367 0.97 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF334-203 - 703 1.1e-33 113.0 139.1 7 18 1.8e-05 0.037 14.9 0.8 1 23 372 394 372 395 0.89 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF334-203 - 703 1.1e-33 113.0 139.1 8 18 1.2e-05 0.025 15.4 1.4 2 23 401 422 400 423 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF334-203 - 703 1.1e-33 113.0 139.1 9 18 7.2e-06 0.014 16.2 3.0 1 23 428 450 428 451 0.97 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF334-203 - 703 1.1e-33 113.0 139.1 10 18 3.2e-05 0.065 14.1 1.2 1 23 456 478 456 479 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF334-203 - 703 1.1e-33 113.0 139.1 11 18 0.0013 2.6 9.1 4.5 1 23 484 506 484 507 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF334-203 - 703 1.1e-33 113.0 139.1 12 18 1.2 2.4e+03 -0.1 0.2 3 15 527 538 526 541 0.70 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF334-203 - 703 1.1e-33 113.0 139.1 13 18 2.1 4.2e+03 -0.9 0.2 1 22 540 561 540 562 0.75 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF334-203 - 703 1.1e-33 113.0 139.1 14 18 5.9e-06 0.012 16.4 3.9 1 23 567 589 567 590 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF334-203 - 703 1.1e-33 113.0 139.1 15 18 4.7e-05 0.095 13.6 3.4 1 23 595 617 595 618 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF334-203 - 703 1.1e-33 113.0 139.1 16 18 8.7e-05 0.17 12.8 4.2 1 23 623 645 623 646 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF334-203 - 703 1.1e-33 113.0 139.1 17 18 4.1e-05 0.081 13.8 0.5 1 23 651 673 651 674 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF334-203 - 703 1.1e-33 113.0 139.1 18 18 0.0014 2.7 9.1 4.5 1 23 679 701 679 702 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF334-203 - 703 2.6e-10 40.1 140.8 1 17 2.8 5.5e+03 -2.5 0.3 18 25 192 199 191 200 0.87 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF334-203 - 703 2.6e-10 40.1 140.8 2 17 2.1 4.3e+03 -2.1 0.2 6 11 236 241 235 241 0.87 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF334-203 - 703 2.6e-10 40.1 140.8 3 17 0.0061 12 6.0 0.2 3 13 261 271 261 282 0.89 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF334-203 - 703 2.6e-10 40.1 140.8 4 17 0.0017 3.5 7.8 0.3 2 24 288 310 288 313 0.92 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF334-203 - 703 2.6e-10 40.1 140.8 5 17 0.0016 3.1 7.9 0.3 2 11 316 325 316 338 0.91 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF334-203 - 703 2.6e-10 40.1 140.8 6 17 2.7e-05 0.054 13.5 1.3 2 24 344 366 343 369 0.91 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF334-203 - 703 2.6e-10 40.1 140.8 7 17 0.00046 0.92 9.6 1.2 2 25 372 395 372 397 0.83 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF334-203 - 703 2.6e-10 40.1 140.8 8 17 0.00017 0.34 11.0 2.0 3 24 401 422 401 425 0.90 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF334-203 - 703 2.6e-10 40.1 140.8 9 17 2e-06 0.004 17.1 2.8 2 24 428 450 428 453 0.96 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF334-203 - 703 2.6e-10 40.1 140.8 10 17 0.00017 0.34 11.0 2.0 2 26 456 480 456 481 0.96 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF334-203 - 703 2.6e-10 40.1 140.8 11 17 0.12 2.3e+02 1.9 4.7 2 11 484 493 483 496 0.90 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF334-203 - 703 2.6e-10 40.1 140.8 12 17 1.1 2.2e+03 -1.2 1.1 3 9 526 532 526 532 0.86 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF334-203 - 703 2.6e-10 40.1 140.8 13 17 0.0033 6.6 6.9 5.0 2 24 567 589 567 592 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF334-203 - 703 2.6e-10 40.1 140.8 14 17 0.0048 9.7 6.3 3.8 2 11 595 604 595 605 0.97 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF334-203 - 703 2.6e-10 40.1 140.8 15 17 0.0043 8.6 6.5 4.2 2 11 623 632 623 636 0.98 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF334-203 - 703 2.6e-10 40.1 140.8 16 17 2e-05 0.04 13.9 0.5 2 24 651 673 651 676 0.92 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF334-203 - 703 2.6e-10 40.1 140.8 17 17 0.013 25 5.0 2.4 2 12 679 689 679 694 0.96 C2H2-type zinc finger # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF334-203.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF334-203.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF334-203.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF334-203.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF334-203.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:04:25 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF334-204.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF334-204.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF334-204.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF334-204.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF334-204.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:04:25 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZNF334-205 - 679 2.5e-92 299.5 125.5 1 19 9 1.8e+04 -3.6 0.1 13 17 131 135 129 136 0.78 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF334-205 - 679 2.5e-92 299.5 125.5 2 19 0.36 7.2e+02 0.9 0.4 4 16 169 181 169 188 0.90 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF334-205 - 679 2.5e-92 299.5 125.5 3 19 0.64 1.3e+03 0.1 0.0 14 24 207 217 194 219 0.83 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF334-205 - 679 2.5e-92 299.5 125.5 4 19 0.0063 12 6.5 0.6 12 25 233 246 227 247 0.80 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF334-205 - 679 2.5e-92 299.5 125.5 5 19 2.7e-10 5.4e-07 29.8 0.3 5 24 254 273 251 274 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF334-205 - 679 2.5e-92 299.5 125.5 6 19 1.3e-12 2.5e-09 37.1 0.7 1 24 278 301 278 302 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF334-205 - 679 2.5e-92 299.5 125.5 7 19 5e-08 0.0001 22.6 0.2 2 24 307 329 306 331 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF334-205 - 679 2.5e-92 299.5 125.5 8 19 2.5e-11 5e-08 33.0 0.5 1 25 334 358 334 359 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF334-205 - 679 2.5e-92 299.5 125.5 9 19 1e-07 0.0002 21.6 2.9 2 24 363 385 362 387 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF334-205 - 679 2.5e-92 299.5 125.5 10 19 8.7e-12 1.7e-08 34.5 1.7 1 24 390 413 390 415 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF334-205 - 679 2.5e-92 299.5 125.5 11 19 9.7e-11 1.9e-07 31.2 0.5 1 22 418 439 418 440 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF334-205 - 679 2.5e-92 299.5 125.5 12 19 4.5e-07 0.0009 19.6 2.6 1 24 446 469 446 471 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF334-205 - 679 2.5e-92 299.5 125.5 13 19 0.00044 0.88 10.1 0.1 2 21 475 507 474 509 0.80 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF334-205 - 679 2.5e-92 299.5 125.5 14 19 0.61 1.2e+03 0.2 0.0 10 18 511 519 507 520 0.86 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF334-205 - 679 2.5e-92 299.5 125.5 15 19 0.0013 2.6 8.6 0.1 5 24 530 552 528 552 0.75 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF334-205 - 679 2.5e-92 299.5 125.5 16 19 2.7e-10 5.4e-07 29.7 1.5 1 24 557 580 557 580 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF334-205 - 679 2.5e-92 299.5 125.5 17 19 5.9e-10 1.2e-06 28.7 4.4 2 24 586 608 585 610 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF334-205 - 679 2.5e-92 299.5 125.5 18 19 1.3e-10 2.6e-07 30.8 1.0 1 25 613 637 613 638 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF334-205 - 679 2.5e-92 299.5 125.5 19 19 2.1e-10 4.1e-07 30.1 3.8 2 26 642 666 641 666 0.94 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZNF334-205 - 679 9.3e-63 205.3 149.4 1 18 1.4 2.8e+03 -0.9 0.0 9 21 188 200 186 201 0.82 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF334-205 - 679 9.3e-63 205.3 149.4 2 18 0.82 1.6e+03 -0.1 0.2 5 10 212 217 211 221 0.80 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF334-205 - 679 9.3e-63 205.3 149.4 3 18 1.9e-07 0.00037 20.8 1.1 2 23 237 258 237 258 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF334-205 - 679 9.3e-63 205.3 149.4 4 18 8.6e-08 0.00017 21.8 2.7 1 23 264 286 264 286 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF334-205 - 679 9.3e-63 205.3 149.4 5 18 6.5e-08 0.00013 22.2 0.2 1 23 292 314 292 314 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF334-205 - 679 9.3e-63 205.3 149.4 6 18 4.3e-08 8.6e-05 22.8 0.8 1 23 320 342 320 342 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF334-205 - 679 9.3e-63 205.3 149.4 7 18 2.2e-08 4.3e-05 23.7 0.6 1 23 348 370 348 370 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF334-205 - 679 9.3e-63 205.3 149.4 8 18 4.6e-06 0.0092 16.4 1.5 2 23 377 398 377 398 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF334-205 - 679 9.3e-63 205.3 149.4 9 18 2.8e-05 0.055 13.9 2.8 1 23 404 426 404 426 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF334-205 - 679 9.3e-63 205.3 149.4 10 18 1.4e-06 0.0027 18.1 0.8 1 23 432 454 432 454 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF334-205 - 679 9.3e-63 205.3 149.4 11 18 7.2e-08 0.00014 22.1 5.7 1 23 460 482 460 482 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF334-205 - 679 9.3e-63 205.3 149.4 12 18 9 1.8e+04 -3.4 0.4 3 8 503 508 502 509 0.81 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF334-205 - 679 9.3e-63 205.3 149.4 13 18 0.047 94 3.8 0.3 8 22 523 537 516 537 0.81 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF334-205 - 679 9.3e-63 205.3 149.4 14 18 2.4e-08 4.7e-05 23.6 5.4 1 23 543 565 543 565 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF334-205 - 679 9.3e-63 205.3 149.4 15 18 8.5e-08 0.00017 21.9 3.6 1 23 571 593 571 593 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF334-205 - 679 9.3e-63 205.3 149.4 16 18 4.9e-08 9.8e-05 22.6 4.9 1 23 599 621 599 621 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF334-205 - 679 9.3e-63 205.3 149.4 17 18 2.4e-07 0.00048 20.4 0.6 1 23 627 649 627 649 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF334-205 - 679 9.3e-63 205.3 149.4 18 18 8.8e-07 0.0018 18.7 5.1 1 23 655 677 655 677 0.98 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZNF334-205 - 679 6.2e-34 113.7 139.1 1 18 5 1e+04 -2.0 0.0 14 23 165 174 163 175 0.80 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF334-205 - 679 6.2e-34 113.7 139.1 2 18 5.4 1.1e+04 -2.1 0.1 5 11 212 218 211 222 0.80 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF334-205 - 679 6.2e-34 113.7 139.1 3 18 8.9e-05 0.18 12.7 0.6 2 23 237 258 236 259 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF334-205 - 679 6.2e-34 113.7 139.1 4 18 2e-05 0.039 14.8 1.5 1 23 264 286 264 287 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF334-205 - 679 6.2e-34 113.7 139.1 5 18 6.1e-06 0.012 16.4 0.1 1 23 292 314 292 315 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF334-205 - 679 6.2e-34 113.7 139.1 6 18 2.8e-06 0.0056 17.4 0.8 1 23 320 342 320 343 0.97 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF334-205 - 679 6.2e-34 113.7 139.1 7 18 1.8e-05 0.035 14.9 0.8 1 23 348 370 348 371 0.89 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF334-205 - 679 6.2e-34 113.7 139.1 8 18 1.2e-05 0.024 15.5 1.4 2 23 377 398 376 399 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF334-205 - 679 6.2e-34 113.7 139.1 9 18 6.9e-06 0.014 16.2 3.0 1 23 404 426 404 427 0.97 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF334-205 - 679 6.2e-34 113.7 139.1 10 18 3.1e-05 0.062 14.2 1.2 1 23 432 454 432 455 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF334-205 - 679 6.2e-34 113.7 139.1 11 18 0.0013 2.5 9.2 4.5 1 23 460 482 460 483 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF334-205 - 679 6.2e-34 113.7 139.1 12 18 1.2 2.3e+03 -0.1 0.2 3 15 503 514 502 517 0.70 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF334-205 - 679 6.2e-34 113.7 139.1 13 18 2 4e+03 -0.8 0.2 1 22 516 537 516 538 0.75 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF334-205 - 679 6.2e-34 113.7 139.1 14 18 5.7e-06 0.011 16.5 3.9 1 23 543 565 543 566 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF334-205 - 679 6.2e-34 113.7 139.1 15 18 4.6e-05 0.091 13.7 3.4 1 23 571 593 571 594 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF334-205 - 679 6.2e-34 113.7 139.1 16 18 8.3e-05 0.17 12.8 4.2 1 23 599 621 599 622 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF334-205 - 679 6.2e-34 113.7 139.1 17 18 3.9e-05 0.078 13.9 0.5 1 23 627 649 627 650 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF334-205 - 679 6.2e-34 113.7 139.1 18 18 0.0013 2.6 9.1 4.5 1 23 655 677 655 678 0.94 C2H2-type zinc finger KRAB PF01352.27 42 ZNF334-205 - 679 5.3e-25 86.8 0.5 1 1 4.5e-28 8.9e-25 86.1 0.5 1 42 8 49 8 49 0.99 KRAB box zf-C2H2_6 PF13912.6 27 ZNF334-205 - 679 1.4e-10 40.9 140.8 1 17 2.7 5.3e+03 -2.4 0.3 18 25 168 175 167 176 0.87 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF334-205 - 679 1.4e-10 40.9 140.8 2 17 2.1 4.1e+03 -2.1 0.2 6 11 212 217 211 217 0.87 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF334-205 - 679 1.4e-10 40.9 140.8 3 17 0.0058 12 6.1 0.2 3 13 237 247 237 258 0.89 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF334-205 - 679 1.4e-10 40.9 140.8 4 17 0.0017 3.3 7.8 0.3 2 24 264 286 264 289 0.92 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF334-205 - 679 1.4e-10 40.9 140.8 5 17 0.0015 3 7.9 0.3 2 11 292 301 292 314 0.91 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF334-205 - 679 1.4e-10 40.9 140.8 6 17 2.6e-05 0.052 13.6 1.3 2 24 320 342 319 345 0.91 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF334-205 - 679 1.4e-10 40.9 140.8 7 17 0.00045 0.89 9.6 1.2 2 25 348 371 348 373 0.83 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF334-205 - 679 1.4e-10 40.9 140.8 8 17 0.00016 0.32 11.0 2.0 3 24 377 398 377 401 0.90 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF334-205 - 679 1.4e-10 40.9 140.8 9 17 1.9e-06 0.0039 17.2 2.8 2 24 404 426 404 429 0.96 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF334-205 - 679 1.4e-10 40.9 140.8 10 17 0.00016 0.33 11.0 2.0 2 26 432 456 432 457 0.96 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF334-205 - 679 1.4e-10 40.9 140.8 11 17 0.11 2.2e+02 2.0 4.7 2 11 460 469 459 472 0.90 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF334-205 - 679 1.4e-10 40.9 140.8 12 17 1.1 2.1e+03 -1.2 1.1 3 9 502 508 502 508 0.86 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF334-205 - 679 1.4e-10 40.9 140.8 13 17 0.0032 6.3 6.9 5.0 2 24 543 565 543 568 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF334-205 - 679 1.4e-10 40.9 140.8 14 17 0.0047 9.3 6.4 3.8 2 11 571 580 571 581 0.97 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF334-205 - 679 1.4e-10 40.9 140.8 15 17 0.0042 8.3 6.5 4.2 2 11 599 608 599 612 0.98 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF334-205 - 679 1.4e-10 40.9 140.8 16 17 1.9e-05 0.038 14.0 0.5 2 24 627 649 627 652 0.92 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF334-205 - 679 1.4e-10 40.9 140.8 17 17 0.012 24 5.0 2.4 2 12 655 665 655 670 0.96 C2H2-type zinc finger # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF334-205.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF334-205.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF334-205.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF334-205.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF334-205.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:04:26 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZNF334-206 - 679 2.5e-92 299.5 125.5 1 19 9 1.8e+04 -3.6 0.1 13 17 131 135 129 136 0.78 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF334-206 - 679 2.5e-92 299.5 125.5 2 19 0.36 7.2e+02 0.9 0.4 4 16 169 181 169 188 0.90 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF334-206 - 679 2.5e-92 299.5 125.5 3 19 0.64 1.3e+03 0.1 0.0 14 24 207 217 194 219 0.83 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF334-206 - 679 2.5e-92 299.5 125.5 4 19 0.0063 12 6.5 0.6 12 25 233 246 227 247 0.80 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF334-206 - 679 2.5e-92 299.5 125.5 5 19 2.7e-10 5.4e-07 29.8 0.3 5 24 254 273 251 274 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF334-206 - 679 2.5e-92 299.5 125.5 6 19 1.3e-12 2.5e-09 37.1 0.7 1 24 278 301 278 302 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF334-206 - 679 2.5e-92 299.5 125.5 7 19 5e-08 0.0001 22.6 0.2 2 24 307 329 306 331 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF334-206 - 679 2.5e-92 299.5 125.5 8 19 2.5e-11 5e-08 33.0 0.5 1 25 334 358 334 359 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF334-206 - 679 2.5e-92 299.5 125.5 9 19 1e-07 0.0002 21.6 2.9 2 24 363 385 362 387 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF334-206 - 679 2.5e-92 299.5 125.5 10 19 8.7e-12 1.7e-08 34.5 1.7 1 24 390 413 390 415 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF334-206 - 679 2.5e-92 299.5 125.5 11 19 9.7e-11 1.9e-07 31.2 0.5 1 22 418 439 418 440 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF334-206 - 679 2.5e-92 299.5 125.5 12 19 4.5e-07 0.0009 19.6 2.6 1 24 446 469 446 471 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF334-206 - 679 2.5e-92 299.5 125.5 13 19 0.00044 0.88 10.1 0.1 2 21 475 507 474 509 0.80 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF334-206 - 679 2.5e-92 299.5 125.5 14 19 0.61 1.2e+03 0.2 0.0 10 18 511 519 507 520 0.86 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF334-206 - 679 2.5e-92 299.5 125.5 15 19 0.0013 2.6 8.6 0.1 5 24 530 552 528 552 0.75 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF334-206 - 679 2.5e-92 299.5 125.5 16 19 2.7e-10 5.4e-07 29.7 1.5 1 24 557 580 557 580 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF334-206 - 679 2.5e-92 299.5 125.5 17 19 5.9e-10 1.2e-06 28.7 4.4 2 24 586 608 585 610 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF334-206 - 679 2.5e-92 299.5 125.5 18 19 1.3e-10 2.6e-07 30.8 1.0 1 25 613 637 613 638 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF334-206 - 679 2.5e-92 299.5 125.5 19 19 2.1e-10 4.1e-07 30.1 3.8 2 26 642 666 641 666 0.94 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZNF334-206 - 679 9.3e-63 205.3 149.4 1 18 1.4 2.8e+03 -0.9 0.0 9 21 188 200 186 201 0.82 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF334-206 - 679 9.3e-63 205.3 149.4 2 18 0.82 1.6e+03 -0.1 0.2 5 10 212 217 211 221 0.80 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF334-206 - 679 9.3e-63 205.3 149.4 3 18 1.9e-07 0.00037 20.8 1.1 2 23 237 258 237 258 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF334-206 - 679 9.3e-63 205.3 149.4 4 18 8.6e-08 0.00017 21.8 2.7 1 23 264 286 264 286 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF334-206 - 679 9.3e-63 205.3 149.4 5 18 6.5e-08 0.00013 22.2 0.2 1 23 292 314 292 314 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF334-206 - 679 9.3e-63 205.3 149.4 6 18 4.3e-08 8.6e-05 22.8 0.8 1 23 320 342 320 342 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF334-206 - 679 9.3e-63 205.3 149.4 7 18 2.2e-08 4.3e-05 23.7 0.6 1 23 348 370 348 370 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF334-206 - 679 9.3e-63 205.3 149.4 8 18 4.6e-06 0.0092 16.4 1.5 2 23 377 398 377 398 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF334-206 - 679 9.3e-63 205.3 149.4 9 18 2.8e-05 0.055 13.9 2.8 1 23 404 426 404 426 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF334-206 - 679 9.3e-63 205.3 149.4 10 18 1.4e-06 0.0027 18.1 0.8 1 23 432 454 432 454 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF334-206 - 679 9.3e-63 205.3 149.4 11 18 7.2e-08 0.00014 22.1 5.7 1 23 460 482 460 482 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF334-206 - 679 9.3e-63 205.3 149.4 12 18 9 1.8e+04 -3.4 0.4 3 8 503 508 502 509 0.81 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF334-206 - 679 9.3e-63 205.3 149.4 13 18 0.047 94 3.8 0.3 8 22 523 537 516 537 0.81 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF334-206 - 679 9.3e-63 205.3 149.4 14 18 2.4e-08 4.7e-05 23.6 5.4 1 23 543 565 543 565 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF334-206 - 679 9.3e-63 205.3 149.4 15 18 8.5e-08 0.00017 21.9 3.6 1 23 571 593 571 593 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF334-206 - 679 9.3e-63 205.3 149.4 16 18 4.9e-08 9.8e-05 22.6 4.9 1 23 599 621 599 621 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF334-206 - 679 9.3e-63 205.3 149.4 17 18 2.4e-07 0.00048 20.4 0.6 1 23 627 649 627 649 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF334-206 - 679 9.3e-63 205.3 149.4 18 18 8.8e-07 0.0018 18.7 5.1 1 23 655 677 655 677 0.98 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZNF334-206 - 679 6.2e-34 113.7 139.1 1 18 5 1e+04 -2.0 0.0 14 23 165 174 163 175 0.80 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF334-206 - 679 6.2e-34 113.7 139.1 2 18 5.4 1.1e+04 -2.1 0.1 5 11 212 218 211 222 0.80 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF334-206 - 679 6.2e-34 113.7 139.1 3 18 8.9e-05 0.18 12.7 0.6 2 23 237 258 236 259 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF334-206 - 679 6.2e-34 113.7 139.1 4 18 2e-05 0.039 14.8 1.5 1 23 264 286 264 287 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF334-206 - 679 6.2e-34 113.7 139.1 5 18 6.1e-06 0.012 16.4 0.1 1 23 292 314 292 315 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF334-206 - 679 6.2e-34 113.7 139.1 6 18 2.8e-06 0.0056 17.4 0.8 1 23 320 342 320 343 0.97 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF334-206 - 679 6.2e-34 113.7 139.1 7 18 1.8e-05 0.035 14.9 0.8 1 23 348 370 348 371 0.89 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF334-206 - 679 6.2e-34 113.7 139.1 8 18 1.2e-05 0.024 15.5 1.4 2 23 377 398 376 399 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF334-206 - 679 6.2e-34 113.7 139.1 9 18 6.9e-06 0.014 16.2 3.0 1 23 404 426 404 427 0.97 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF334-206 - 679 6.2e-34 113.7 139.1 10 18 3.1e-05 0.062 14.2 1.2 1 23 432 454 432 455 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF334-206 - 679 6.2e-34 113.7 139.1 11 18 0.0013 2.5 9.2 4.5 1 23 460 482 460 483 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF334-206 - 679 6.2e-34 113.7 139.1 12 18 1.2 2.3e+03 -0.1 0.2 3 15 503 514 502 517 0.70 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF334-206 - 679 6.2e-34 113.7 139.1 13 18 2 4e+03 -0.8 0.2 1 22 516 537 516 538 0.75 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF334-206 - 679 6.2e-34 113.7 139.1 14 18 5.7e-06 0.011 16.5 3.9 1 23 543 565 543 566 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF334-206 - 679 6.2e-34 113.7 139.1 15 18 4.6e-05 0.091 13.7 3.4 1 23 571 593 571 594 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF334-206 - 679 6.2e-34 113.7 139.1 16 18 8.3e-05 0.17 12.8 4.2 1 23 599 621 599 622 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF334-206 - 679 6.2e-34 113.7 139.1 17 18 3.9e-05 0.078 13.9 0.5 1 23 627 649 627 650 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF334-206 - 679 6.2e-34 113.7 139.1 18 18 0.0013 2.6 9.1 4.5 1 23 655 677 655 678 0.94 C2H2-type zinc finger KRAB PF01352.27 42 ZNF334-206 - 679 5.3e-25 86.8 0.5 1 1 4.5e-28 8.9e-25 86.1 0.5 1 42 8 49 8 49 0.99 KRAB box zf-C2H2_6 PF13912.6 27 ZNF334-206 - 679 1.4e-10 40.9 140.8 1 17 2.7 5.3e+03 -2.4 0.3 18 25 168 175 167 176 0.87 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF334-206 - 679 1.4e-10 40.9 140.8 2 17 2.1 4.1e+03 -2.1 0.2 6 11 212 217 211 217 0.87 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF334-206 - 679 1.4e-10 40.9 140.8 3 17 0.0058 12 6.1 0.2 3 13 237 247 237 258 0.89 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF334-206 - 679 1.4e-10 40.9 140.8 4 17 0.0017 3.3 7.8 0.3 2 24 264 286 264 289 0.92 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF334-206 - 679 1.4e-10 40.9 140.8 5 17 0.0015 3 7.9 0.3 2 11 292 301 292 314 0.91 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF334-206 - 679 1.4e-10 40.9 140.8 6 17 2.6e-05 0.052 13.6 1.3 2 24 320 342 319 345 0.91 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF334-206 - 679 1.4e-10 40.9 140.8 7 17 0.00045 0.89 9.6 1.2 2 25 348 371 348 373 0.83 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF334-206 - 679 1.4e-10 40.9 140.8 8 17 0.00016 0.32 11.0 2.0 3 24 377 398 377 401 0.90 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF334-206 - 679 1.4e-10 40.9 140.8 9 17 1.9e-06 0.0039 17.2 2.8 2 24 404 426 404 429 0.96 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF334-206 - 679 1.4e-10 40.9 140.8 10 17 0.00016 0.33 11.0 2.0 2 26 432 456 432 457 0.96 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF334-206 - 679 1.4e-10 40.9 140.8 11 17 0.11 2.2e+02 2.0 4.7 2 11 460 469 459 472 0.90 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF334-206 - 679 1.4e-10 40.9 140.8 12 17 1.1 2.1e+03 -1.2 1.1 3 9 502 508 502 508 0.86 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF334-206 - 679 1.4e-10 40.9 140.8 13 17 0.0032 6.3 6.9 5.0 2 24 543 565 543 568 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF334-206 - 679 1.4e-10 40.9 140.8 14 17 0.0047 9.3 6.4 3.8 2 11 571 580 571 581 0.97 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF334-206 - 679 1.4e-10 40.9 140.8 15 17 0.0042 8.3 6.5 4.2 2 11 599 608 599 612 0.98 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF334-206 - 679 1.4e-10 40.9 140.8 16 17 1.9e-05 0.038 14.0 0.5 2 24 627 649 627 652 0.92 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF334-206 - 679 1.4e-10 40.9 140.8 17 17 0.012 24 5.0 2.4 2 12 655 665 655 670 0.96 C2H2-type zinc finger # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF334-206.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF334-206.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF334-206.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF334-206.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF334-206.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:04:26 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_5 PF13909.6 26 ZNF335-201 - 1342 3.1e-32 110.0 78.1 1 10 3.7e-07 0.00066 19.4 4.2 1 24 245 268 245 268 0.94 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 ZNF335-201 - 1342 3.1e-32 110.0 78.1 2 10 9.6e-07 0.0017 18.0 1.5 1 20 495 514 495 519 0.93 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 ZNF335-201 - 1342 3.1e-32 110.0 78.1 3 10 1.7e-09 3e-06 26.9 1.1 1 25 523 546 523 547 0.97 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 ZNF335-201 - 1342 3.1e-32 110.0 78.1 4 10 0.02 35 4.3 1.3 15 26 576 586 574 586 0.86 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 ZNF335-201 - 1342 3.1e-32 110.0 78.1 5 10 0.0035 6.3 6.7 1.0 1 19 621 639 621 643 0.90 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 ZNF335-201 - 1342 3.1e-32 110.0 78.1 6 10 2.8e-06 0.005 16.6 0.1 1 26 649 674 649 674 0.98 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 ZNF335-201 - 1342 3.1e-32 110.0 78.1 7 10 1.4e-06 0.0025 17.5 5.7 3 21 680 698 678 702 0.91 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 ZNF335-201 - 1342 3.1e-32 110.0 78.1 8 10 2.4e-05 0.044 13.6 0.0 1 25 1047 1070 1047 1071 0.97 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 ZNF335-201 - 1342 3.1e-32 110.0 78.1 9 10 1.3e-10 2.3e-07 30.4 6.0 1 26 1075 1099 1075 1099 0.95 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 ZNF335-201 - 1342 3.1e-32 110.0 78.1 10 10 5.2 9.3e+03 -3.5 0.3 16 25 1118 1127 1117 1128 0.81 C2H2-type zinc-finger domain zf-C2H2_4 PF13894.6 24 ZNF335-201 - 1342 1e-25 88.2 102.1 1 13 3.4e-05 0.06 14.2 2.1 1 24 245 268 245 268 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF335-201 - 1342 1e-25 88.2 102.1 2 13 3.3e-05 0.059 14.2 1.3 1 23 465 487 465 488 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF335-201 - 1342 1e-25 88.2 102.1 3 13 0.0028 5 8.2 2.3 1 23 495 517 495 518 0.89 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF335-201 - 1342 1e-25 88.2 102.1 4 13 0.0069 12 7.0 0.3 1 23 523 545 523 546 0.74 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF335-201 - 1342 1e-25 88.2 102.1 5 13 1.7e-07 0.00031 21.3 0.5 1 23 562 584 562 585 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF335-201 - 1342 1e-25 88.2 102.1 6 13 0.0002 0.36 11.8 2.9 1 23 590 612 590 613 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF335-201 - 1342 1e-25 88.2 102.1 7 13 0.00026 0.47 11.4 2.1 1 23 621 643 621 644 0.88 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF335-201 - 1342 1e-25 88.2 102.1 8 13 0.0029 5.2 8.2 1.5 1 24 649 672 649 672 0.78 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF335-201 - 1342 1e-25 88.2 102.1 9 13 0.027 49 5.1 2.5 1 21 678 698 678 698 0.86 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF335-201 - 1342 1e-25 88.2 102.1 10 13 0.00088 1.6 9.8 0.1 1 23 1019 1041 1019 1042 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF335-201 - 1342 1e-25 88.2 102.1 11 13 0.00071 1.3 10.1 0.2 1 23 1047 1069 1047 1070 0.79 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF335-201 - 1342 1e-25 88.2 102.1 12 13 1.1e-05 0.02 15.7 2.7 1 23 1075 1097 1075 1098 0.88 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF335-201 - 1342 1e-25 88.2 102.1 13 13 8.4e-05 0.15 13.0 3.0 1 24 1103 1126 1103 1126 0.95 C2H2-type zinc finger zf-C2H2 PF00096.26 23 ZNF335-201 - 1342 1.6e-24 84.9 110.8 1 13 1.4e-05 0.025 15.0 2.9 1 23 245 268 245 268 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF335-201 - 1342 1.6e-24 84.9 110.8 2 13 1.3 2.4e+03 -0.7 1.6 2 23 466 487 465 487 0.85 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF335-201 - 1342 1.6e-24 84.9 110.8 3 13 4.8e-05 0.087 13.3 2.7 1 23 495 517 495 517 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF335-201 - 1342 1.6e-24 84.9 110.8 4 13 0.0021 3.7 8.2 0.3 1 23 523 545 523 545 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF335-201 - 1342 1.6e-24 84.9 110.8 5 13 2.5e-07 0.00044 20.5 0.5 1 23 562 584 562 584 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF335-201 - 1342 1.6e-24 84.9 110.8 6 13 8.9e-06 0.016 15.6 5.4 1 23 590 612 590 612 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF335-201 - 1342 1.6e-24 84.9 110.8 7 13 0.0009 1.6 9.3 1.6 1 23 621 643 621 643 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF335-201 - 1342 1.6e-24 84.9 110.8 8 13 0.015 28 5.4 1.2 1 23 649 672 649 672 0.89 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF335-201 - 1342 1.6e-24 84.9 110.8 9 13 0.0069 12 6.5 7.5 1 21 678 698 678 701 0.94 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF335-201 - 1342 1.6e-24 84.9 110.8 10 13 0.00072 1.3 9.6 0.1 1 23 1019 1041 1019 1041 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF335-201 - 1342 1.6e-24 84.9 110.8 11 13 3e-05 0.054 14.0 0.1 1 23 1047 1069 1047 1069 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF335-201 - 1342 1.6e-24 84.9 110.8 12 13 1.9e-05 0.034 14.6 4.0 1 23 1075 1097 1075 1097 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF335-201 - 1342 1.6e-24 84.9 110.8 13 13 2.9e-05 0.053 14.0 3.6 1 23 1103 1126 1103 1126 0.96 Zinc finger, C2H2 type zf-H2C2_2 PF13465.6 26 ZNF335-201 - 1342 1.2e-22 79.3 103.1 1 16 1 1.8e+03 -0.4 0.2 14 25 244 255 241 256 0.82 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF335-201 - 1342 1.2e-22 79.3 103.1 2 16 1.7 3e+03 -1.1 0.7 2 9 260 268 260 271 0.78 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF335-201 - 1342 1.2e-22 79.3 103.1 3 16 0.36 6.5e+02 1.1 0.1 13 25 463 475 456 476 0.81 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF335-201 - 1342 1.2e-22 79.3 103.1 4 16 0.023 41 4.8 0.2 1 23 479 503 479 506 0.86 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF335-201 - 1342 1.2e-22 79.3 103.1 5 16 3e-07 0.00054 20.3 0.8 1 25 509 533 509 534 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF335-201 - 1342 1.2e-22 79.3 103.1 6 16 0.012 22 5.7 0.2 4 23 540 570 537 571 0.65 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF335-201 - 1342 1.2e-22 79.3 103.1 7 16 2.7e-08 4.9e-05 23.6 4.5 2 26 577 601 576 601 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF335-201 - 1342 1.2e-22 79.3 103.1 8 16 0.088 1.6e+02 3.0 0.9 5 22 608 628 605 631 0.69 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF335-201 - 1342 1.2e-22 79.3 103.1 9 16 3.8e-06 0.0068 16.8 0.7 2 24 636 658 635 660 0.90 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF335-201 - 1342 1.2e-22 79.3 103.1 10 16 4.2e-06 0.0076 16.6 2.0 4 25 666 688 664 689 0.85 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF335-201 - 1342 1.2e-22 79.3 103.1 11 16 10 1.8e+04 -3.6 0.3 1 9 692 701 692 703 0.80 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF335-201 - 1342 1.2e-22 79.3 103.1 12 16 0.79 1.4e+03 -0.0 0.7 13 24 1017 1028 1015 1028 0.89 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF335-201 - 1342 1.2e-22 79.3 103.1 13 16 0.00058 1 9.9 0.2 3 23 1035 1055 1033 1058 0.88 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF335-201 - 1342 1.2e-22 79.3 103.1 14 16 5.4e-06 0.0097 16.3 0.3 3 26 1063 1086 1061 1086 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF335-201 - 1342 1.2e-22 79.3 103.1 15 16 4.8e-10 8.6e-07 29.1 1.8 1 25 1089 1113 1089 1114 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF335-201 - 1342 1.2e-22 79.3 103.1 16 16 8.8 1.6e+04 -3.3 0.4 1 10 1117 1127 1117 1129 0.60 Zinc-finger double domain # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF335-201.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF335-201.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF335-201.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF335-201.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF335-201.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:04:27 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_5 PF13909.6 26 ZNF335-202 - 181 1e-12 47.6 9.1 1 2 1.5e-07 0.00015 21.4 1.5 1 20 63 82 63 87 0.92 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 ZNF335-202 - 181 1e-12 47.6 9.1 2 2 2.5e-10 2.6e-07 30.3 1.1 1 25 91 114 91 115 0.97 C2H2-type zinc-finger domain # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF335-202.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF335-202.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF335-202.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF335-202.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF335-202.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:04:27 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF335-203.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF335-203.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF335-203.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF335-203.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF335-203.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:04:27 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF335-204.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF335-204.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF335-204.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF335-204.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF335-204.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:04:28 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZNF337-201 - 751 3.8e-103 333.7 121.1 1 20 0.014 14 6.3 2.3 5 24 198 217 197 218 0.89 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF337-201 - 751 3.8e-103 333.7 121.1 2 20 6.8e-07 0.00068 20.0 0.0 2 24 223 245 222 246 0.89 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF337-201 - 751 3.8e-103 333.7 121.1 3 20 5.2e-09 5.2e-06 26.6 0.4 1 25 250 274 250 275 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF337-201 - 751 3.8e-103 333.7 121.1 4 20 3.6e-10 3.6e-07 30.3 0.5 2 25 279 302 278 303 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF337-201 - 751 3.8e-103 333.7 121.1 5 20 1.2e-07 0.00012 22.3 1.0 2 26 307 331 306 331 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF337-201 - 751 3.8e-103 333.7 121.1 6 20 2.7e-08 2.7e-05 24.4 0.5 3 26 336 359 334 359 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF337-201 - 751 3.8e-103 333.7 121.1 7 20 1.5e-07 0.00015 22.0 1.4 2 25 363 386 362 386 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF337-201 - 751 3.8e-103 333.7 121.1 8 20 3e-09 3e-06 27.4 0.5 2 25 391 414 390 415 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF337-201 - 751 3.8e-103 333.7 121.1 9 20 1e-08 1e-05 25.7 0.1 2 24 419 441 418 443 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF337-201 - 751 3.8e-103 333.7 121.1 10 20 1e-06 0.001 19.4 0.2 2 24 447 469 446 471 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF337-201 - 751 3.8e-103 333.7 121.1 11 20 6.5e-05 0.065 13.7 1.5 4 24 477 497 475 498 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF337-201 - 751 3.8e-103 333.7 121.1 12 20 7.5e-06 0.0075 16.7 0.8 2 25 503 526 502 526 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF337-201 - 751 3.8e-103 333.7 121.1 13 20 8.7e-09 8.7e-06 25.9 0.7 1 25 530 554 530 554 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF337-201 - 751 3.8e-103 333.7 121.1 14 20 9e-08 8.9e-05 22.7 0.1 1 24 558 581 558 582 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF337-201 - 751 3.8e-103 333.7 121.1 15 20 6.1e-06 0.006 17.0 0.2 4 24 589 609 587 610 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF337-201 - 751 3.8e-103 333.7 121.1 16 20 9e-06 0.0089 16.4 0.2 1 24 614 637 614 638 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF337-201 - 751 3.8e-103 333.7 121.1 17 20 6.5e-08 6.5e-05 23.2 0.1 1 24 642 665 642 666 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF337-201 - 751 3.8e-103 333.7 121.1 18 20 6.4e-06 0.0064 16.9 1.7 1 25 670 695 670 696 0.86 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF337-201 - 751 3.8e-103 333.7 121.1 19 20 2.2e-10 2.2e-07 31.0 0.2 1 26 699 724 699 724 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF337-201 - 751 3.8e-103 333.7 121.1 20 20 0.059 59 4.3 0.9 2 16 728 742 727 742 0.89 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZNF337-201 - 751 1.2e-85 277.4 143.1 1 20 2.3 2.3e+03 -0.6 0.1 7 23 186 202 180 202 0.85 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF337-201 - 751 1.2e-85 277.4 143.1 2 20 8.8e-06 0.0088 16.5 1.2 1 23 208 230 208 230 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF337-201 - 751 1.2e-85 277.4 143.1 3 20 5.7e-08 5.6e-05 23.4 0.4 1 23 236 258 236 258 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF337-201 - 751 1.2e-85 277.4 143.1 4 20 6e-07 0.0006 20.1 0.8 2 23 265 286 264 286 0.95 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF337-201 - 751 1.2e-85 277.4 143.1 5 20 1.4e-07 0.00014 22.1 1.2 1 23 292 314 292 314 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF337-201 - 751 1.2e-85 277.4 143.1 6 20 5.1e-07 0.0005 20.4 0.8 1 23 320 342 320 342 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF337-201 - 751 1.2e-85 277.4 143.1 7 20 4e-09 4e-06 27.0 2.6 1 23 348 370 348 370 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF337-201 - 751 1.2e-85 277.4 143.1 8 20 1.9e-06 0.0019 18.5 1.5 1 23 376 398 376 398 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF337-201 - 751 1.2e-85 277.4 143.1 9 20 9.1e-09 9e-06 25.9 2.0 1 23 404 426 404 426 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF337-201 - 751 1.2e-85 277.4 143.1 10 20 2.6e-07 0.00026 21.3 0.2 1 23 432 454 432 454 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF337-201 - 751 1.2e-85 277.4 143.1 11 20 3.7e-08 3.7e-05 23.9 1.1 1 23 460 482 460 482 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF337-201 - 751 1.2e-85 277.4 143.1 12 20 8.5e-07 0.00085 19.6 1.4 3 23 490 510 488 510 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF337-201 - 751 1.2e-85 277.4 143.1 13 20 6.7e-07 0.00067 20.0 0.9 1 23 516 538 516 538 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF337-201 - 751 1.2e-85 277.4 143.1 14 20 2.4e-05 0.024 15.1 1.0 1 20 544 563 544 566 0.92 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF337-201 - 751 1.2e-85 277.4 143.1 15 20 0.00014 0.14 12.6 1.0 1 23 572 594 572 594 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF337-201 - 751 1.2e-85 277.4 143.1 16 20 6.7e-05 0.067 13.7 0.1 1 23 600 622 600 622 0.95 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF337-201 - 751 1.2e-85 277.4 143.1 17 20 1.4e-06 0.0014 19.0 0.3 1 23 628 650 628 650 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF337-201 - 751 1.2e-85 277.4 143.1 18 20 0.00076 0.76 10.4 0.7 1 20 656 675 656 679 0.92 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF337-201 - 751 1.2e-85 277.4 143.1 19 20 5.4e-07 0.00054 20.3 0.5 1 23 685 707 685 707 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF337-201 - 751 1.2e-85 277.4 143.1 20 20 2e-07 0.0002 21.7 3.1 1 23 713 735 713 735 0.99 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZNF337-201 - 751 1.7e-61 199.5 140.5 1 20 1.7 1.7e+03 0.3 0.1 7 23 186 202 180 203 0.81 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF337-201 - 751 1.7e-61 199.5 140.5 2 20 0.00026 0.26 12.2 1.0 1 23 208 230 208 231 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF337-201 - 751 1.7e-61 199.5 140.5 3 20 1.2e-06 0.0012 19.5 0.4 1 23 236 258 236 259 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF337-201 - 751 1.7e-61 199.5 140.5 4 20 9.9e-06 0.0099 16.6 0.7 1 23 264 286 264 287 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF337-201 - 751 1.7e-61 199.5 140.5 5 20 3.7e-07 0.00037 21.1 0.9 1 23 292 314 292 315 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF337-201 - 751 1.7e-61 199.5 140.5 6 20 0.00018 0.18 12.7 0.8 1 23 320 342 320 343 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF337-201 - 751 1.7e-61 199.5 140.5 7 20 1.2e-06 0.0012 19.5 1.7 1 23 348 370 348 371 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF337-201 - 751 1.7e-61 199.5 140.5 8 20 1.9e-06 0.0019 18.9 1.6 1 23 376 398 376 399 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF337-201 - 751 1.7e-61 199.5 140.5 9 20 1e-05 0.01 16.6 1.9 1 23 404 426 404 427 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF337-201 - 751 1.7e-61 199.5 140.5 10 20 5e-05 0.05 14.5 0.3 1 23 432 454 432 455 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF337-201 - 751 1.7e-61 199.5 140.5 11 20 0.00031 0.3 12.0 0.8 1 23 460 482 460 483 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF337-201 - 751 1.7e-61 199.5 140.5 12 20 2.8e-06 0.0028 18.3 0.7 2 23 489 510 488 511 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF337-201 - 751 1.7e-61 199.5 140.5 13 20 0.0004 0.4 11.6 0.5 1 23 516 538 516 539 0.91 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF337-201 - 751 1.7e-61 199.5 140.5 14 20 9.4e-06 0.0093 16.7 1.5 1 23 544 566 544 567 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF337-201 - 751 1.7e-61 199.5 140.5 15 20 9.7e-05 0.097 13.6 0.7 1 23 572 594 572 595 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF337-201 - 751 1.7e-61 199.5 140.5 16 20 0.0022 2.2 9.3 0.2 1 23 600 622 600 623 0.85 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF337-201 - 751 1.7e-61 199.5 140.5 17 20 5e-05 0.05 14.5 0.4 1 23 628 650 628 651 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF337-201 - 751 1.7e-61 199.5 140.5 18 20 0.0002 0.2 12.6 1.4 1 23 656 679 656 680 0.83 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF337-201 - 751 1.7e-61 199.5 140.5 19 20 7.6e-05 0.075 13.9 0.4 1 23 685 707 685 708 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF337-201 - 751 1.7e-61 199.5 140.5 20 20 2e-06 0.002 18.8 2.1 1 23 713 735 713 736 0.96 C2H2-type zinc finger zf-C2H2_jaz PF12171.8 27 ZNF337-201 - 751 3.6e-23 81.3 68.1 1 17 0.01 10 6.6 0.2 2 24 208 230 207 230 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF337-201 - 751 3.6e-23 81.3 68.1 2 17 0.04 40 4.7 0.0 2 24 236 258 235 259 0.91 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF337-201 - 751 3.6e-23 81.3 68.1 3 17 0.0048 4.8 7.6 0.0 4 24 266 286 263 286 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF337-201 - 751 3.6e-23 81.3 68.1 4 17 2.4e-05 0.024 14.9 0.5 2 22 292 312 291 312 0.95 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF337-201 - 751 3.6e-23 81.3 68.1 5 17 0.0078 7.8 6.9 0.1 2 22 320 340 319 340 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF337-201 - 751 3.6e-23 81.3 68.1 6 17 4e-05 0.04 14.2 0.2 2 24 348 370 347 371 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF337-201 - 751 3.6e-23 81.3 68.1 7 17 0.0026 2.6 8.5 0.6 2 24 404 426 403 427 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF337-201 - 751 3.6e-23 81.3 68.1 8 17 1.4 1.4e+03 -0.2 0.1 2 23 432 453 431 455 0.86 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF337-201 - 751 3.6e-23 81.3 68.1 9 17 0.0024 2.4 8.5 0.1 2 24 460 482 459 483 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF337-201 - 751 3.6e-23 81.3 68.1 10 17 0.013 12 6.3 0.1 4 22 490 508 488 508 0.95 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF337-201 - 751 3.6e-23 81.3 68.1 11 17 3.4 3.4e+03 -1.5 0.1 2 11 516 525 515 526 0.89 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF337-201 - 751 3.6e-23 81.3 68.1 12 17 0.018 18 5.8 0.2 2 20 544 562 543 563 0.77 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF337-201 - 751 3.6e-23 81.3 68.1 13 17 0.0066 6.6 7.1 0.2 2 24 572 594 571 595 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF337-201 - 751 3.6e-23 81.3 68.1 14 17 3.5 3.5e+03 -1.5 0.1 2 20 600 618 599 619 0.72 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF337-201 - 751 3.6e-23 81.3 68.1 15 17 0.007 7 7.1 0.0 2 24 628 650 627 651 0.91 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF337-201 - 751 3.6e-23 81.3 68.1 16 17 0.00065 0.64 10.4 0.0 2 22 685 705 684 705 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF337-201 - 751 3.6e-23 81.3 68.1 17 17 0.00016 0.16 12.3 1.0 2 22 713 733 712 733 0.95 Zinc-finger double-stranded RNA-binding KRAB PF01352.27 42 ZNF337-201 - 751 1.1e-21 76.2 0.0 1 1 1.9e-24 1.9e-21 75.4 0.0 2 42 12 52 11 52 0.97 KRAB box zf-trcl PF13451.6 48 ZNF337-201 - 751 3.4e-10 39.6 84.0 1 16 0.13 1.3e+02 2.6 0.2 3 14 206 217 204 218 0.85 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF337-201 - 751 3.4e-10 39.6 84.0 2 16 0.25 2.5e+02 1.7 0.0 3 14 234 245 233 250 0.85 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF337-201 - 751 3.4e-10 39.6 84.0 3 16 0.32 3.1e+02 1.3 0.0 3 12 262 271 260 274 0.85 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF337-201 - 751 3.4e-10 39.6 84.0 4 16 0.11 1.1e+02 2.9 0.1 3 14 290 301 288 302 0.88 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF337-201 - 751 3.4e-10 39.6 84.0 5 16 0.078 78 3.3 3.4 3 39 318 353 316 356 0.66 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF337-201 - 751 3.4e-10 39.6 84.0 6 16 0.066 65 3.5 0.2 3 14 374 385 372 386 0.87 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF337-201 - 751 3.4e-10 39.6 84.0 7 16 0.0067 6.7 6.7 0.2 3 14 402 413 400 415 0.90 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF337-201 - 751 3.4e-10 39.6 84.0 8 16 0.0066 6.6 6.7 0.1 3 15 430 442 428 445 0.91 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF337-201 - 751 3.4e-10 39.6 84.0 9 16 0.0014 1.4 8.9 2.5 2 15 457 470 456 495 0.63 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF337-201 - 751 3.4e-10 39.6 84.0 10 16 0.017 17 5.4 0.3 3 15 514 526 513 528 0.88 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF337-201 - 751 3.4e-10 39.6 84.0 11 16 0.03 30 4.6 0.1 3 14 542 553 540 558 0.86 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF337-201 - 751 3.4e-10 39.6 84.0 12 16 0.0054 5.3 7.0 0.1 3 15 570 582 569 585 0.87 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF337-201 - 751 3.4e-10 39.6 84.0 13 16 0.00095 0.95 9.4 0.1 3 17 598 612 596 614 0.89 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF337-201 - 751 3.4e-10 39.6 84.0 14 16 0.0072 7.2 6.6 0.2 4 16 627 639 625 642 0.88 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF337-201 - 751 3.4e-10 39.6 84.0 15 16 0.0023 2.3 8.2 3.1 3 41 654 692 652 698 0.92 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF337-201 - 751 3.4e-10 39.6 84.0 16 16 0.17 1.7e+02 2.2 0.2 4 14 712 722 710 725 0.86 Probable zinc-ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF337-201 - 751 4.7e-10 39.4 82.2 1 14 0.083 83 3.4 0.4 6 34 180 215 179 219 0.68 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF337-201 - 751 4.7e-10 39.4 82.2 2 14 0.00091 0.91 9.7 0.3 6 34 236 271 235 277 0.87 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF337-201 - 751 4.7e-10 39.4 82.2 3 14 4.9e-05 0.049 13.7 2.5 6 34 292 327 291 333 0.79 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF337-201 - 751 4.7e-10 39.4 82.2 4 14 0.00049 0.49 10.6 2.9 6 34 348 383 347 389 0.84 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF337-201 - 751 4.7e-10 39.4 82.2 5 14 0.058 58 3.9 3.6 6 34 376 411 374 416 0.83 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF337-201 - 751 4.7e-10 39.4 82.2 6 14 0.015 15 5.8 3.2 6 34 404 439 403 445 0.80 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF337-201 - 751 4.7e-10 39.4 82.2 7 14 0.007 7 6.9 2.6 6 34 432 467 421 472 0.81 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF337-201 - 751 4.7e-10 39.4 82.2 8 14 0.00079 0.79 9.9 2.9 6 36 460 497 459 500 0.83 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF337-201 - 751 4.7e-10 39.4 82.2 9 14 0.0018 1.8 8.7 1.1 6 34 516 551 515 556 0.86 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF337-201 - 751 4.7e-10 39.4 82.2 10 14 0.004 3.9 7.7 0.7 6 34 572 607 571 610 0.85 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF337-201 - 751 4.7e-10 39.4 82.2 11 14 0.00063 0.63 10.2 0.2 6 34 628 663 627 670 0.87 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF337-201 - 751 4.7e-10 39.4 82.2 12 14 0.033 32 4.7 1.1 6 34 656 692 655 698 0.76 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF337-201 - 751 4.7e-10 39.4 82.2 13 14 0.19 1.9e+02 2.2 6.6 6 35 685 721 684 725 0.61 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF337-201 - 751 4.7e-10 39.4 82.2 14 14 0.01 10 6.3 1.3 6 16 713 723 712 735 0.89 Zinc ribbon domain zinc_ribbon_15 PF17032.5 86 ZNF337-201 - 751 1.5e-09 38.5 62.5 1 10 0.0017 1.7 9.5 0.5 28 74 198 244 187 251 0.84 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF337-201 - 751 1.5e-09 38.5 62.5 2 10 0.0017 1.6 9.5 1.4 35 81 261 307 251 310 0.84 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF337-201 - 751 1.5e-09 38.5 62.5 3 10 0.0025 2.4 8.9 5.3 35 80 289 334 284 366 0.88 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF337-201 - 751 1.5e-09 38.5 62.5 4 10 0.00087 0.87 10.4 1.6 31 78 369 416 360 421 0.87 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF337-201 - 751 1.5e-09 38.5 62.5 5 10 0.0044 4.4 8.1 0.5 34 81 428 475 419 478 0.81 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF337-201 - 751 1.5e-09 38.5 62.5 6 10 0.0011 1 10.1 0.4 33 74 483 524 473 532 0.86 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF337-201 - 751 1.5e-09 38.5 62.5 7 10 0.12 1.2e+02 3.5 3.2 35 73 541 579 529 607 0.83 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF337-201 - 751 1.5e-09 38.5 62.5 8 10 0.043 42 5.0 0.3 34 74 596 636 588 642 0.84 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF337-201 - 751 1.5e-09 38.5 62.5 9 10 0.092 92 3.9 1.3 34 72 624 662 600 670 0.65 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF337-201 - 751 1.5e-09 38.5 62.5 10 10 0.0017 1.7 9.4 5.1 29 81 676 728 657 731 0.89 zinc-ribbon family ADK_lid PF05191.14 36 ZNF337-201 - 751 6.8e-08 32.4 64.2 1 13 0.0018 1.8 8.6 0.5 3 28 237 270 236 272 0.71 Adenylate kinase, active site lid ADK_lid PF05191.14 36 ZNF337-201 - 751 6.8e-08 32.4 64.2 2 13 0.052 51 4.0 1.8 3 28 265 298 264 301 0.72 Adenylate kinase, active site lid ADK_lid PF05191.14 36 ZNF337-201 - 751 6.8e-08 32.4 64.2 3 13 0.14 1.4e+02 2.5 0.2 4 14 294 304 292 315 0.80 Adenylate kinase, active site lid ADK_lid PF05191.14 36 ZNF337-201 - 751 6.8e-08 32.4 64.2 4 13 0.006 6 6.9 4.0 3 28 321 354 320 359 0.81 Adenylate kinase, active site lid ADK_lid PF05191.14 36 ZNF337-201 - 751 6.8e-08 32.4 64.2 5 13 0.027 27 4.9 0.7 4 29 378 411 376 415 0.61 Adenylate kinase, active site lid ADK_lid PF05191.14 36 ZNF337-201 - 751 6.8e-08 32.4 64.2 6 13 0.00015 0.15 12.1 1.1 3 34 405 444 404 445 0.76 Adenylate kinase, active site lid ADK_lid PF05191.14 36 ZNF337-201 - 751 6.8e-08 32.4 64.2 7 13 0.016 16 5.6 0.6 3 28 461 494 460 498 0.70 Adenylate kinase, active site lid ADK_lid PF05191.14 36 ZNF337-201 - 751 6.8e-08 32.4 64.2 8 13 1.7 1.7e+03 -0.9 0.3 4 12 490 498 488 507 0.77 Adenylate kinase, active site lid ADK_lid PF05191.14 36 ZNF337-201 - 751 6.8e-08 32.4 64.2 9 13 0.016 16 5.6 0.5 1 27 515 549 515 562 0.66 Adenylate kinase, active site lid ADK_lid PF05191.14 36 ZNF337-201 - 751 6.8e-08 32.4 64.2 10 13 0.0025 2.5 8.2 0.1 4 31 574 609 572 613 0.85 Adenylate kinase, active site lid ADK_lid PF05191.14 36 ZNF337-201 - 751 6.8e-08 32.4 64.2 11 13 0.00015 0.15 12.0 0.2 3 29 629 663 628 667 0.76 Adenylate kinase, active site lid ADK_lid PF05191.14 36 ZNF337-201 - 751 6.8e-08 32.4 64.2 12 13 0.067 67 3.6 1.3 3 29 686 720 685 726 0.66 Adenylate kinase, active site lid ADK_lid PF05191.14 36 ZNF337-201 - 751 6.8e-08 32.4 64.2 13 13 0.95 9.5e+02 -0.1 0.4 4 12 715 723 713 735 0.80 Adenylate kinase, active site lid # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF337-201.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF337-201.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF337-201.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF337-201.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF337-201.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:04:28 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZNF337-202 - 751 3.8e-103 333.7 121.1 1 20 0.014 14 6.3 2.3 5 24 198 217 197 218 0.89 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF337-202 - 751 3.8e-103 333.7 121.1 2 20 6.8e-07 0.00068 20.0 0.0 2 24 223 245 222 246 0.89 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF337-202 - 751 3.8e-103 333.7 121.1 3 20 5.2e-09 5.2e-06 26.6 0.4 1 25 250 274 250 275 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF337-202 - 751 3.8e-103 333.7 121.1 4 20 3.6e-10 3.6e-07 30.3 0.5 2 25 279 302 278 303 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF337-202 - 751 3.8e-103 333.7 121.1 5 20 1.2e-07 0.00012 22.3 1.0 2 26 307 331 306 331 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF337-202 - 751 3.8e-103 333.7 121.1 6 20 2.7e-08 2.7e-05 24.4 0.5 3 26 336 359 334 359 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF337-202 - 751 3.8e-103 333.7 121.1 7 20 1.5e-07 0.00015 22.0 1.4 2 25 363 386 362 386 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF337-202 - 751 3.8e-103 333.7 121.1 8 20 3e-09 3e-06 27.4 0.5 2 25 391 414 390 415 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF337-202 - 751 3.8e-103 333.7 121.1 9 20 1e-08 1e-05 25.7 0.1 2 24 419 441 418 443 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF337-202 - 751 3.8e-103 333.7 121.1 10 20 1e-06 0.001 19.4 0.2 2 24 447 469 446 471 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF337-202 - 751 3.8e-103 333.7 121.1 11 20 6.5e-05 0.065 13.7 1.5 4 24 477 497 475 498 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF337-202 - 751 3.8e-103 333.7 121.1 12 20 7.5e-06 0.0075 16.7 0.8 2 25 503 526 502 526 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF337-202 - 751 3.8e-103 333.7 121.1 13 20 8.7e-09 8.7e-06 25.9 0.7 1 25 530 554 530 554 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF337-202 - 751 3.8e-103 333.7 121.1 14 20 9e-08 8.9e-05 22.7 0.1 1 24 558 581 558 582 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF337-202 - 751 3.8e-103 333.7 121.1 15 20 6.1e-06 0.006 17.0 0.2 4 24 589 609 587 610 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF337-202 - 751 3.8e-103 333.7 121.1 16 20 9e-06 0.0089 16.4 0.2 1 24 614 637 614 638 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF337-202 - 751 3.8e-103 333.7 121.1 17 20 6.5e-08 6.5e-05 23.2 0.1 1 24 642 665 642 666 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF337-202 - 751 3.8e-103 333.7 121.1 18 20 6.4e-06 0.0064 16.9 1.7 1 25 670 695 670 696 0.86 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF337-202 - 751 3.8e-103 333.7 121.1 19 20 2.2e-10 2.2e-07 31.0 0.2 1 26 699 724 699 724 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF337-202 - 751 3.8e-103 333.7 121.1 20 20 0.059 59 4.3 0.9 2 16 728 742 727 742 0.89 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZNF337-202 - 751 1.2e-85 277.4 143.1 1 20 2.3 2.3e+03 -0.6 0.1 7 23 186 202 180 202 0.85 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF337-202 - 751 1.2e-85 277.4 143.1 2 20 8.8e-06 0.0088 16.5 1.2 1 23 208 230 208 230 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF337-202 - 751 1.2e-85 277.4 143.1 3 20 5.7e-08 5.6e-05 23.4 0.4 1 23 236 258 236 258 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF337-202 - 751 1.2e-85 277.4 143.1 4 20 6e-07 0.0006 20.1 0.8 2 23 265 286 264 286 0.95 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF337-202 - 751 1.2e-85 277.4 143.1 5 20 1.4e-07 0.00014 22.1 1.2 1 23 292 314 292 314 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF337-202 - 751 1.2e-85 277.4 143.1 6 20 5.1e-07 0.0005 20.4 0.8 1 23 320 342 320 342 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF337-202 - 751 1.2e-85 277.4 143.1 7 20 4e-09 4e-06 27.0 2.6 1 23 348 370 348 370 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF337-202 - 751 1.2e-85 277.4 143.1 8 20 1.9e-06 0.0019 18.5 1.5 1 23 376 398 376 398 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF337-202 - 751 1.2e-85 277.4 143.1 9 20 9.1e-09 9e-06 25.9 2.0 1 23 404 426 404 426 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF337-202 - 751 1.2e-85 277.4 143.1 10 20 2.6e-07 0.00026 21.3 0.2 1 23 432 454 432 454 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF337-202 - 751 1.2e-85 277.4 143.1 11 20 3.7e-08 3.7e-05 23.9 1.1 1 23 460 482 460 482 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF337-202 - 751 1.2e-85 277.4 143.1 12 20 8.5e-07 0.00085 19.6 1.4 3 23 490 510 488 510 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF337-202 - 751 1.2e-85 277.4 143.1 13 20 6.7e-07 0.00067 20.0 0.9 1 23 516 538 516 538 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF337-202 - 751 1.2e-85 277.4 143.1 14 20 2.4e-05 0.024 15.1 1.0 1 20 544 563 544 566 0.92 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF337-202 - 751 1.2e-85 277.4 143.1 15 20 0.00014 0.14 12.6 1.0 1 23 572 594 572 594 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF337-202 - 751 1.2e-85 277.4 143.1 16 20 6.7e-05 0.067 13.7 0.1 1 23 600 622 600 622 0.95 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF337-202 - 751 1.2e-85 277.4 143.1 17 20 1.4e-06 0.0014 19.0 0.3 1 23 628 650 628 650 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF337-202 - 751 1.2e-85 277.4 143.1 18 20 0.00076 0.76 10.4 0.7 1 20 656 675 656 679 0.92 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF337-202 - 751 1.2e-85 277.4 143.1 19 20 5.4e-07 0.00054 20.3 0.5 1 23 685 707 685 707 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF337-202 - 751 1.2e-85 277.4 143.1 20 20 2e-07 0.0002 21.7 3.1 1 23 713 735 713 735 0.99 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZNF337-202 - 751 1.7e-61 199.5 140.5 1 20 1.7 1.7e+03 0.3 0.1 7 23 186 202 180 203 0.81 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF337-202 - 751 1.7e-61 199.5 140.5 2 20 0.00026 0.26 12.2 1.0 1 23 208 230 208 231 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF337-202 - 751 1.7e-61 199.5 140.5 3 20 1.2e-06 0.0012 19.5 0.4 1 23 236 258 236 259 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF337-202 - 751 1.7e-61 199.5 140.5 4 20 9.9e-06 0.0099 16.6 0.7 1 23 264 286 264 287 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF337-202 - 751 1.7e-61 199.5 140.5 5 20 3.7e-07 0.00037 21.1 0.9 1 23 292 314 292 315 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF337-202 - 751 1.7e-61 199.5 140.5 6 20 0.00018 0.18 12.7 0.8 1 23 320 342 320 343 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF337-202 - 751 1.7e-61 199.5 140.5 7 20 1.2e-06 0.0012 19.5 1.7 1 23 348 370 348 371 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF337-202 - 751 1.7e-61 199.5 140.5 8 20 1.9e-06 0.0019 18.9 1.6 1 23 376 398 376 399 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF337-202 - 751 1.7e-61 199.5 140.5 9 20 1e-05 0.01 16.6 1.9 1 23 404 426 404 427 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF337-202 - 751 1.7e-61 199.5 140.5 10 20 5e-05 0.05 14.5 0.3 1 23 432 454 432 455 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF337-202 - 751 1.7e-61 199.5 140.5 11 20 0.00031 0.3 12.0 0.8 1 23 460 482 460 483 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF337-202 - 751 1.7e-61 199.5 140.5 12 20 2.8e-06 0.0028 18.3 0.7 2 23 489 510 488 511 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF337-202 - 751 1.7e-61 199.5 140.5 13 20 0.0004 0.4 11.6 0.5 1 23 516 538 516 539 0.91 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF337-202 - 751 1.7e-61 199.5 140.5 14 20 9.4e-06 0.0093 16.7 1.5 1 23 544 566 544 567 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF337-202 - 751 1.7e-61 199.5 140.5 15 20 9.7e-05 0.097 13.6 0.7 1 23 572 594 572 595 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF337-202 - 751 1.7e-61 199.5 140.5 16 20 0.0022 2.2 9.3 0.2 1 23 600 622 600 623 0.85 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF337-202 - 751 1.7e-61 199.5 140.5 17 20 5e-05 0.05 14.5 0.4 1 23 628 650 628 651 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF337-202 - 751 1.7e-61 199.5 140.5 18 20 0.0002 0.2 12.6 1.4 1 23 656 679 656 680 0.83 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF337-202 - 751 1.7e-61 199.5 140.5 19 20 7.6e-05 0.075 13.9 0.4 1 23 685 707 685 708 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF337-202 - 751 1.7e-61 199.5 140.5 20 20 2e-06 0.002 18.8 2.1 1 23 713 735 713 736 0.96 C2H2-type zinc finger zf-C2H2_jaz PF12171.8 27 ZNF337-202 - 751 3.6e-23 81.3 68.1 1 17 0.01 10 6.6 0.2 2 24 208 230 207 230 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF337-202 - 751 3.6e-23 81.3 68.1 2 17 0.04 40 4.7 0.0 2 24 236 258 235 259 0.91 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF337-202 - 751 3.6e-23 81.3 68.1 3 17 0.0048 4.8 7.6 0.0 4 24 266 286 263 286 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF337-202 - 751 3.6e-23 81.3 68.1 4 17 2.4e-05 0.024 14.9 0.5 2 22 292 312 291 312 0.95 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF337-202 - 751 3.6e-23 81.3 68.1 5 17 0.0078 7.8 6.9 0.1 2 22 320 340 319 340 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF337-202 - 751 3.6e-23 81.3 68.1 6 17 4e-05 0.04 14.2 0.2 2 24 348 370 347 371 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF337-202 - 751 3.6e-23 81.3 68.1 7 17 0.0026 2.6 8.5 0.6 2 24 404 426 403 427 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF337-202 - 751 3.6e-23 81.3 68.1 8 17 1.4 1.4e+03 -0.2 0.1 2 23 432 453 431 455 0.86 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF337-202 - 751 3.6e-23 81.3 68.1 9 17 0.0024 2.4 8.5 0.1 2 24 460 482 459 483 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF337-202 - 751 3.6e-23 81.3 68.1 10 17 0.013 12 6.3 0.1 4 22 490 508 488 508 0.95 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF337-202 - 751 3.6e-23 81.3 68.1 11 17 3.4 3.4e+03 -1.5 0.1 2 11 516 525 515 526 0.89 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF337-202 - 751 3.6e-23 81.3 68.1 12 17 0.018 18 5.8 0.2 2 20 544 562 543 563 0.77 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF337-202 - 751 3.6e-23 81.3 68.1 13 17 0.0066 6.6 7.1 0.2 2 24 572 594 571 595 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF337-202 - 751 3.6e-23 81.3 68.1 14 17 3.5 3.5e+03 -1.5 0.1 2 20 600 618 599 619 0.72 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF337-202 - 751 3.6e-23 81.3 68.1 15 17 0.007 7 7.1 0.0 2 24 628 650 627 651 0.91 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF337-202 - 751 3.6e-23 81.3 68.1 16 17 0.00065 0.64 10.4 0.0 2 22 685 705 684 705 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF337-202 - 751 3.6e-23 81.3 68.1 17 17 0.00016 0.16 12.3 1.0 2 22 713 733 712 733 0.95 Zinc-finger double-stranded RNA-binding KRAB PF01352.27 42 ZNF337-202 - 751 1.1e-21 76.2 0.0 1 1 1.9e-24 1.9e-21 75.4 0.0 2 42 12 52 11 52 0.97 KRAB box zf-trcl PF13451.6 48 ZNF337-202 - 751 3.4e-10 39.6 84.0 1 16 0.13 1.3e+02 2.6 0.2 3 14 206 217 204 218 0.85 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF337-202 - 751 3.4e-10 39.6 84.0 2 16 0.25 2.5e+02 1.7 0.0 3 14 234 245 233 250 0.85 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF337-202 - 751 3.4e-10 39.6 84.0 3 16 0.32 3.1e+02 1.3 0.0 3 12 262 271 260 274 0.85 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF337-202 - 751 3.4e-10 39.6 84.0 4 16 0.11 1.1e+02 2.9 0.1 3 14 290 301 288 302 0.88 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF337-202 - 751 3.4e-10 39.6 84.0 5 16 0.078 78 3.3 3.4 3 39 318 353 316 356 0.66 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF337-202 - 751 3.4e-10 39.6 84.0 6 16 0.066 65 3.5 0.2 3 14 374 385 372 386 0.87 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF337-202 - 751 3.4e-10 39.6 84.0 7 16 0.0067 6.7 6.7 0.2 3 14 402 413 400 415 0.90 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF337-202 - 751 3.4e-10 39.6 84.0 8 16 0.0066 6.6 6.7 0.1 3 15 430 442 428 445 0.91 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF337-202 - 751 3.4e-10 39.6 84.0 9 16 0.0014 1.4 8.9 2.5 2 15 457 470 456 495 0.63 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF337-202 - 751 3.4e-10 39.6 84.0 10 16 0.017 17 5.4 0.3 3 15 514 526 513 528 0.88 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF337-202 - 751 3.4e-10 39.6 84.0 11 16 0.03 30 4.6 0.1 3 14 542 553 540 558 0.86 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF337-202 - 751 3.4e-10 39.6 84.0 12 16 0.0054 5.3 7.0 0.1 3 15 570 582 569 585 0.87 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF337-202 - 751 3.4e-10 39.6 84.0 13 16 0.00095 0.95 9.4 0.1 3 17 598 612 596 614 0.89 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF337-202 - 751 3.4e-10 39.6 84.0 14 16 0.0072 7.2 6.6 0.2 4 16 627 639 625 642 0.88 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF337-202 - 751 3.4e-10 39.6 84.0 15 16 0.0023 2.3 8.2 3.1 3 41 654 692 652 698 0.92 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF337-202 - 751 3.4e-10 39.6 84.0 16 16 0.17 1.7e+02 2.2 0.2 4 14 712 722 710 725 0.86 Probable zinc-ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF337-202 - 751 4.7e-10 39.4 82.2 1 14 0.083 83 3.4 0.4 6 34 180 215 179 219 0.68 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF337-202 - 751 4.7e-10 39.4 82.2 2 14 0.00091 0.91 9.7 0.3 6 34 236 271 235 277 0.87 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF337-202 - 751 4.7e-10 39.4 82.2 3 14 4.9e-05 0.049 13.7 2.5 6 34 292 327 291 333 0.79 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF337-202 - 751 4.7e-10 39.4 82.2 4 14 0.00049 0.49 10.6 2.9 6 34 348 383 347 389 0.84 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF337-202 - 751 4.7e-10 39.4 82.2 5 14 0.058 58 3.9 3.6 6 34 376 411 374 416 0.83 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF337-202 - 751 4.7e-10 39.4 82.2 6 14 0.015 15 5.8 3.2 6 34 404 439 403 445 0.80 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF337-202 - 751 4.7e-10 39.4 82.2 7 14 0.007 7 6.9 2.6 6 34 432 467 421 472 0.81 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF337-202 - 751 4.7e-10 39.4 82.2 8 14 0.00079 0.79 9.9 2.9 6 36 460 497 459 500 0.83 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF337-202 - 751 4.7e-10 39.4 82.2 9 14 0.0018 1.8 8.7 1.1 6 34 516 551 515 556 0.86 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF337-202 - 751 4.7e-10 39.4 82.2 10 14 0.004 3.9 7.7 0.7 6 34 572 607 571 610 0.85 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF337-202 - 751 4.7e-10 39.4 82.2 11 14 0.00063 0.63 10.2 0.2 6 34 628 663 627 670 0.87 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF337-202 - 751 4.7e-10 39.4 82.2 12 14 0.033 32 4.7 1.1 6 34 656 692 655 698 0.76 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF337-202 - 751 4.7e-10 39.4 82.2 13 14 0.19 1.9e+02 2.2 6.6 6 35 685 721 684 725 0.61 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF337-202 - 751 4.7e-10 39.4 82.2 14 14 0.01 10 6.3 1.3 6 16 713 723 712 735 0.89 Zinc ribbon domain zinc_ribbon_15 PF17032.5 86 ZNF337-202 - 751 1.5e-09 38.5 62.5 1 10 0.0017 1.7 9.5 0.5 28 74 198 244 187 251 0.84 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF337-202 - 751 1.5e-09 38.5 62.5 2 10 0.0017 1.6 9.5 1.4 35 81 261 307 251 310 0.84 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF337-202 - 751 1.5e-09 38.5 62.5 3 10 0.0025 2.4 8.9 5.3 35 80 289 334 284 366 0.88 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF337-202 - 751 1.5e-09 38.5 62.5 4 10 0.00087 0.87 10.4 1.6 31 78 369 416 360 421 0.87 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF337-202 - 751 1.5e-09 38.5 62.5 5 10 0.0044 4.4 8.1 0.5 34 81 428 475 419 478 0.81 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF337-202 - 751 1.5e-09 38.5 62.5 6 10 0.0011 1 10.1 0.4 33 74 483 524 473 532 0.86 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF337-202 - 751 1.5e-09 38.5 62.5 7 10 0.12 1.2e+02 3.5 3.2 35 73 541 579 529 607 0.83 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF337-202 - 751 1.5e-09 38.5 62.5 8 10 0.043 42 5.0 0.3 34 74 596 636 588 642 0.84 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF337-202 - 751 1.5e-09 38.5 62.5 9 10 0.092 92 3.9 1.3 34 72 624 662 600 670 0.65 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF337-202 - 751 1.5e-09 38.5 62.5 10 10 0.0017 1.7 9.4 5.1 29 81 676 728 657 731 0.89 zinc-ribbon family ADK_lid PF05191.14 36 ZNF337-202 - 751 6.8e-08 32.4 64.2 1 13 0.0018 1.8 8.6 0.5 3 28 237 270 236 272 0.71 Adenylate kinase, active site lid ADK_lid PF05191.14 36 ZNF337-202 - 751 6.8e-08 32.4 64.2 2 13 0.052 51 4.0 1.8 3 28 265 298 264 301 0.72 Adenylate kinase, active site lid ADK_lid PF05191.14 36 ZNF337-202 - 751 6.8e-08 32.4 64.2 3 13 0.14 1.4e+02 2.5 0.2 4 14 294 304 292 315 0.80 Adenylate kinase, active site lid ADK_lid PF05191.14 36 ZNF337-202 - 751 6.8e-08 32.4 64.2 4 13 0.006 6 6.9 4.0 3 28 321 354 320 359 0.81 Adenylate kinase, active site lid ADK_lid PF05191.14 36 ZNF337-202 - 751 6.8e-08 32.4 64.2 5 13 0.027 27 4.9 0.7 4 29 378 411 376 415 0.61 Adenylate kinase, active site lid ADK_lid PF05191.14 36 ZNF337-202 - 751 6.8e-08 32.4 64.2 6 13 0.00015 0.15 12.1 1.1 3 34 405 444 404 445 0.76 Adenylate kinase, active site lid ADK_lid PF05191.14 36 ZNF337-202 - 751 6.8e-08 32.4 64.2 7 13 0.016 16 5.6 0.6 3 28 461 494 460 498 0.70 Adenylate kinase, active site lid ADK_lid PF05191.14 36 ZNF337-202 - 751 6.8e-08 32.4 64.2 8 13 1.7 1.7e+03 -0.9 0.3 4 12 490 498 488 507 0.77 Adenylate kinase, active site lid ADK_lid PF05191.14 36 ZNF337-202 - 751 6.8e-08 32.4 64.2 9 13 0.016 16 5.6 0.5 1 27 515 549 515 562 0.66 Adenylate kinase, active site lid ADK_lid PF05191.14 36 ZNF337-202 - 751 6.8e-08 32.4 64.2 10 13 0.0025 2.5 8.2 0.1 4 31 574 609 572 613 0.85 Adenylate kinase, active site lid ADK_lid PF05191.14 36 ZNF337-202 - 751 6.8e-08 32.4 64.2 11 13 0.00015 0.15 12.0 0.2 3 29 629 663 628 667 0.76 Adenylate kinase, active site lid ADK_lid PF05191.14 36 ZNF337-202 - 751 6.8e-08 32.4 64.2 12 13 0.067 67 3.6 1.3 3 29 686 720 685 726 0.66 Adenylate kinase, active site lid ADK_lid PF05191.14 36 ZNF337-202 - 751 6.8e-08 32.4 64.2 13 13 0.95 9.5e+02 -0.1 0.4 4 12 715 723 713 735 0.80 Adenylate kinase, active site lid # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF337-202.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF337-202.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF337-202.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF337-202.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF337-202.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:04:29 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF337-203.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF337-203.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF337-203.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF337-203.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF337-203.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:04:29 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZNF33A-201 - 829 1e-113 367.1 143.7 1 19 0.14 2e+02 2.6 0.7 16 26 159 169 148 169 0.84 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF33A-201 - 829 1e-113 367.1 143.7 2 19 9 1.3e+04 -3.1 0.6 5 13 200 208 199 209 0.79 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF33A-201 - 829 1e-113 367.1 143.7 3 19 9.6e-05 0.14 12.6 0.4 10 25 342 357 335 358 0.83 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF33A-201 - 829 1e-113 367.1 143.7 4 19 5.8e-12 8.6e-09 35.4 0.8 1 24 361 384 361 386 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF33A-201 - 829 1e-113 367.1 143.7 5 19 1.7e-12 2.6e-09 37.1 2.1 1 26 389 414 389 414 0.97 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF33A-201 - 829 1e-113 367.1 143.7 6 19 2.4e-11 3.6e-08 33.5 0.4 1 24 417 440 417 440 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF33A-201 - 829 1e-113 367.1 143.7 7 19 2.5e-10 3.8e-07 30.3 1.4 1 24 445 468 445 469 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF33A-201 - 829 1e-113 367.1 143.7 8 19 1.1e-10 1.7e-07 31.3 1.7 1 25 473 497 473 498 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF33A-201 - 829 1e-113 367.1 143.7 9 19 4.2e-09 6.2e-06 26.4 0.6 1 25 501 525 501 526 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF33A-201 - 829 1e-113 367.1 143.7 10 19 1.3e-08 1.9e-05 24.8 0.4 2 24 530 552 530 552 0.98 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF33A-201 - 829 1e-113 367.1 143.7 11 19 3.8e-11 5.7e-08 32.8 1.4 1 26 557 582 557 582 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF33A-201 - 829 1e-113 367.1 143.7 12 19 6.3e-10 9.4e-07 29.0 2.4 2 24 586 608 585 610 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF33A-201 - 829 1e-113 367.1 143.7 13 19 2.7e-11 4.1e-08 33.3 1.6 2 24 614 636 613 638 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF33A-201 - 829 1e-113 367.1 143.7 14 19 2.2e-09 3.3e-06 27.3 2.4 2 24 642 664 641 666 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF33A-201 - 829 1e-113 367.1 143.7 15 19 6.6e-10 9.8e-07 28.9 0.6 2 24 670 692 669 692 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF33A-201 - 829 1e-113 367.1 143.7 16 19 2.6e-10 3.9e-07 30.2 2.8 2 26 698 722 697 722 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF33A-201 - 829 1e-113 367.1 143.7 17 19 0.00087 1.3 9.6 2.3 2 24 726 748 725 750 0.90 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF33A-201 - 829 1e-113 367.1 143.7 18 19 1.9e-11 2.9e-08 33.8 0.7 2 25 754 777 753 778 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF33A-201 - 829 1e-113 367.1 143.7 19 19 0.31 4.6e+02 1.5 0.1 1 13 781 793 781 798 0.88 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZNF33A-201 - 829 3.2e-91 295.0 155.3 1 18 4.7 7.1e+03 -2.1 0.0 6 17 2 13 1 14 0.85 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF33A-201 - 829 3.2e-91 295.0 155.3 2 18 0.0023 3.5 8.3 0.2 2 17 159 174 158 175 0.90 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF33A-201 - 829 3.2e-91 295.0 155.3 3 18 2.2e-07 0.00033 21.0 1.1 1 23 347 369 347 369 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF33A-201 - 829 3.2e-91 295.0 155.3 4 18 1.1e-07 0.00016 21.9 0.9 1 23 375 397 375 397 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF33A-201 - 829 3.2e-91 295.0 155.3 5 18 3.1e-09 4.7e-06 26.8 1.4 1 23 403 425 403 425 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF33A-201 - 829 3.2e-91 295.0 155.3 6 18 3.9e-09 5.8e-06 26.5 3.9 1 23 431 453 431 453 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF33A-201 - 829 3.2e-91 295.0 155.3 7 18 1.2e-08 1.8e-05 24.9 2.9 1 23 459 481 459 481 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF33A-201 - 829 3.2e-91 295.0 155.3 8 18 5.5e-09 8.2e-06 26.0 0.5 1 23 487 509 487 509 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF33A-201 - 829 3.2e-91 295.0 155.3 9 18 7.3e-08 0.00011 22.5 1.7 1 23 515 537 515 537 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF33A-201 - 829 3.2e-91 295.0 155.3 10 18 6e-08 9e-05 22.7 2.8 1 23 543 565 543 565 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF33A-201 - 829 3.2e-91 295.0 155.3 11 18 9.1e-08 0.00014 22.2 3.3 1 23 571 593 571 593 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF33A-201 - 829 3.2e-91 295.0 155.3 12 18 4.9e-08 7.3e-05 23.0 3.8 1 23 599 621 599 621 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF33A-201 - 829 3.2e-91 295.0 155.3 13 18 2.5e-09 3.8e-06 27.1 0.6 1 23 627 649 627 649 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF33A-201 - 829 3.2e-91 295.0 155.3 14 18 4.5e-09 6.7e-06 26.3 3.3 1 23 655 677 655 677 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF33A-201 - 829 3.2e-91 295.0 155.3 15 18 1e-05 0.015 15.7 2.5 1 23 683 705 683 705 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF33A-201 - 829 3.2e-91 295.0 155.3 16 18 1.6e-07 0.00023 21.4 4.6 1 23 711 733 711 733 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF33A-201 - 829 3.2e-91 295.0 155.3 17 18 4.3e-08 6.4e-05 23.2 2.1 2 23 740 761 739 761 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF33A-201 - 829 3.2e-91 295.0 155.3 18 18 3e-09 4.4e-06 26.8 2.1 1 23 767 789 767 789 0.99 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZNF33A-201 - 829 6.2e-40 132.4 152.2 1 18 0.014 21 6.3 0.4 2 16 159 173 158 175 0.89 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF33A-201 - 829 6.2e-40 132.4 152.2 2 18 3.2 4.8e+03 -1.0 0.1 9 22 211 224 209 225 0.80 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF33A-201 - 829 6.2e-40 132.4 152.2 3 18 2.5e-05 0.037 14.9 1.5 1 23 347 369 347 370 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF33A-201 - 829 6.2e-40 132.4 152.2 4 18 1.5e-05 0.022 15.6 1.0 1 23 375 397 375 398 0.97 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF33A-201 - 829 6.2e-40 132.4 152.2 5 18 7.7e-05 0.11 13.3 1.4 1 23 403 425 403 426 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF33A-201 - 829 6.2e-40 132.4 152.2 6 18 4.5e-06 0.0067 17.2 2.8 1 23 431 453 431 454 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF33A-201 - 829 6.2e-40 132.4 152.2 7 18 3.8e-05 0.057 14.3 2.4 1 23 459 481 459 482 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF33A-201 - 829 6.2e-40 132.4 152.2 8 18 7.3e-06 0.011 16.5 0.4 1 23 487 509 487 510 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF33A-201 - 829 6.2e-40 132.4 152.2 9 18 0.00069 1 10.4 1.1 1 23 515 537 515 538 0.81 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF33A-201 - 829 6.2e-40 132.4 152.2 10 18 2.8e-05 0.042 14.7 2.3 1 23 543 565 543 566 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF33A-201 - 829 6.2e-40 132.4 152.2 11 18 1.2e-05 0.018 15.8 2.9 1 23 571 593 571 594 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF33A-201 - 829 6.2e-40 132.4 152.2 12 18 0.0024 3.6 8.7 2.2 1 23 599 621 599 622 0.87 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF33A-201 - 829 6.2e-40 132.4 152.2 13 18 7.1e-05 0.11 13.4 0.4 1 23 627 649 627 650 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF33A-201 - 829 6.2e-40 132.4 152.2 14 18 4.5e-05 0.067 14.1 3.1 1 23 655 677 655 678 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF33A-201 - 829 6.2e-40 132.4 152.2 15 18 2.6e-05 0.038 14.8 2.4 1 23 683 705 683 706 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF33A-201 - 829 6.2e-40 132.4 152.2 16 18 0.0017 2.5 9.2 3.8 1 23 711 733 711 734 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF33A-201 - 829 6.2e-40 132.4 152.2 17 18 0.00018 0.26 12.2 2.1 2 23 740 761 739 762 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF33A-201 - 829 6.2e-40 132.4 152.2 18 18 2e-05 0.029 15.2 0.9 1 23 767 789 767 790 0.96 C2H2-type zinc finger KRAB PF01352.27 42 ZNF33A-201 - 829 5.7e-26 89.9 0.2 1 1 7.7e-29 1.2e-25 88.9 0.2 1 42 29 70 29 70 0.99 KRAB box # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF33A-201.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF33A-201.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF33A-201.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF33A-201.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF33A-201.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:04:30 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZNF33A-202 - 699 2.2e-115 372.4 143.2 1 19 0.13 2e+02 2.7 0.9 16 26 29 39 19 39 0.84 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF33A-202 - 699 2.2e-115 372.4 143.2 2 19 7.4 1.1e+04 -2.9 0.6 5 13 70 78 69 79 0.79 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF33A-202 - 699 2.2e-115 372.4 143.2 3 19 7.9e-05 0.12 12.9 0.4 10 25 212 227 205 228 0.83 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF33A-202 - 699 2.2e-115 372.4 143.2 4 19 4.7e-12 7.1e-09 35.7 0.8 1 24 231 254 231 256 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF33A-202 - 699 2.2e-115 372.4 143.2 5 19 1.4e-12 2.1e-09 37.4 2.1 1 26 259 284 259 284 0.97 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF33A-202 - 699 2.2e-115 372.4 143.2 6 19 2e-11 3e-08 33.7 0.4 1 24 287 310 287 310 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF33A-202 - 699 2.2e-115 372.4 143.2 7 19 2.1e-10 3.1e-07 30.5 1.4 1 24 315 338 315 339 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF33A-202 - 699 2.2e-115 372.4 143.2 8 19 9.3e-11 1.4e-07 31.6 1.7 1 25 343 367 343 368 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF33A-202 - 699 2.2e-115 372.4 143.2 9 19 3.4e-09 5.1e-06 26.7 0.6 1 25 371 395 371 396 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF33A-202 - 699 2.2e-115 372.4 143.2 10 19 1.1e-08 1.6e-05 25.1 0.4 2 24 400 422 400 422 0.98 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF33A-202 - 699 2.2e-115 372.4 143.2 11 19 3.1e-11 4.7e-08 33.1 1.4 1 26 427 452 427 452 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF33A-202 - 699 2.2e-115 372.4 143.2 12 19 5.2e-10 7.7e-07 29.3 2.4 2 24 456 478 455 480 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF33A-202 - 699 2.2e-115 372.4 143.2 13 19 2.3e-11 3.4e-08 33.6 1.6 2 24 484 506 483 508 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF33A-202 - 699 2.2e-115 372.4 143.2 14 19 1.8e-09 2.7e-06 27.5 2.4 2 24 512 534 511 536 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF33A-202 - 699 2.2e-115 372.4 143.2 15 19 5.4e-10 8.1e-07 29.2 0.6 2 24 540 562 539 562 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF33A-202 - 699 2.2e-115 372.4 143.2 16 19 2.2e-10 3.2e-07 30.5 2.8 2 26 568 592 567 592 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF33A-202 - 699 2.2e-115 372.4 143.2 17 19 0.00072 1.1 9.8 2.3 2 24 596 618 595 620 0.90 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF33A-202 - 699 2.2e-115 372.4 143.2 18 19 1.6e-11 2.3e-08 34.1 0.7 2 25 624 647 623 648 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF33A-202 - 699 2.2e-115 372.4 143.2 19 19 0.25 3.7e+02 1.8 0.0 1 13 651 663 651 670 0.89 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZNF33A-202 - 699 1.2e-90 293.2 160.7 1 17 0.0019 2.9 8.5 0.2 2 17 29 44 28 45 0.90 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF33A-202 - 699 1.2e-90 293.2 160.7 2 17 1.8e-07 0.00027 21.2 1.1 1 23 217 239 217 239 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF33A-202 - 699 1.2e-90 293.2 160.7 3 17 8.9e-08 0.00013 22.2 0.9 1 23 245 267 245 267 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF33A-202 - 699 1.2e-90 293.2 160.7 4 17 2.6e-09 3.8e-06 27.0 1.4 1 23 273 295 273 295 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF33A-202 - 699 1.2e-90 293.2 160.7 5 17 3.2e-09 4.8e-06 26.7 3.9 1 23 301 323 301 323 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF33A-202 - 699 1.2e-90 293.2 160.7 6 17 9.9e-09 1.5e-05 25.2 2.9 1 23 329 351 329 351 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF33A-202 - 699 1.2e-90 293.2 160.7 7 17 4.5e-09 6.8e-06 26.3 0.5 1 23 357 379 357 379 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF33A-202 - 699 1.2e-90 293.2 160.7 8 17 6e-08 8.9e-05 22.7 1.7 1 23 385 407 385 407 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF33A-202 - 699 1.2e-90 293.2 160.7 9 17 4.9e-08 7.4e-05 23.0 2.8 1 23 413 435 413 435 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF33A-202 - 699 1.2e-90 293.2 160.7 10 17 7.5e-08 0.00011 22.4 3.3 1 23 441 463 441 463 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF33A-202 - 699 1.2e-90 293.2 160.7 11 17 4e-08 6e-05 23.3 3.8 1 23 469 491 469 491 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF33A-202 - 699 1.2e-90 293.2 160.7 12 17 2.1e-09 3.1e-06 27.3 0.6 1 23 497 519 497 519 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF33A-202 - 699 1.2e-90 293.2 160.7 13 17 3.7e-09 5.5e-06 26.6 3.3 1 23 525 547 525 547 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF33A-202 - 699 1.2e-90 293.2 160.7 14 17 8.3e-06 0.012 16.0 2.5 1 23 553 575 553 575 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF33A-202 - 699 1.2e-90 293.2 160.7 15 17 1.3e-07 0.00019 21.7 4.6 1 23 581 603 581 603 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF33A-202 - 699 1.2e-90 293.2 160.7 16 17 3.5e-08 5.2e-05 23.5 2.1 2 23 610 631 609 631 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF33A-202 - 699 1.2e-90 293.2 160.7 17 17 2.4e-09 3.6e-06 27.1 2.1 1 23 637 659 637 659 0.99 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZNF33A-202 - 699 2.1e-41 137.0 152.2 1 18 0.011 17 6.6 0.4 2 16 29 43 28 45 0.89 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF33A-202 - 699 2.1e-41 137.0 152.2 2 18 2.6 3.9e+03 -0.8 0.1 9 22 81 94 79 95 0.80 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF33A-202 - 699 2.1e-41 137.0 152.2 3 18 2e-05 0.03 15.1 1.5 1 23 217 239 217 240 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF33A-202 - 699 2.1e-41 137.0 152.2 4 18 1.2e-05 0.018 15.8 1.0 1 23 245 267 245 268 0.97 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF33A-202 - 699 2.1e-41 137.0 152.2 5 18 6.3e-05 0.094 13.6 1.4 1 23 273 295 273 296 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF33A-202 - 699 2.1e-41 137.0 152.2 6 18 3.7e-06 0.0055 17.4 2.8 1 23 301 323 301 324 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF33A-202 - 699 2.1e-41 137.0 152.2 7 18 3.1e-05 0.047 14.5 2.4 1 23 329 351 329 352 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF33A-202 - 699 2.1e-41 137.0 152.2 8 18 6e-06 0.0089 16.8 0.4 1 23 357 379 357 380 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF33A-202 - 699 2.1e-41 137.0 152.2 9 18 0.00056 0.84 10.6 1.1 1 23 385 407 385 408 0.81 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF33A-202 - 699 2.1e-41 137.0 152.2 10 18 2.3e-05 0.034 15.0 2.3 1 23 413 435 413 436 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF33A-202 - 699 2.1e-41 137.0 152.2 11 18 1e-05 0.015 16.1 2.9 1 23 441 463 441 464 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF33A-202 - 699 2.1e-41 137.0 152.2 12 18 0.002 3 8.9 2.2 1 23 469 491 469 492 0.87 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF33A-202 - 699 2.1e-41 137.0 152.2 13 18 5.8e-05 0.087 13.7 0.4 1 23 497 519 497 520 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF33A-202 - 699 2.1e-41 137.0 152.2 14 18 3.7e-05 0.055 14.3 3.1 1 23 525 547 525 548 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF33A-202 - 699 2.1e-41 137.0 152.2 15 18 2.1e-05 0.032 15.1 2.4 1 23 553 575 553 576 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF33A-202 - 699 2.1e-41 137.0 152.2 16 18 0.0014 2 9.5 3.8 1 23 581 603 581 604 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF33A-202 - 699 2.1e-41 137.0 152.2 17 18 0.00014 0.22 12.5 2.1 2 23 610 631 609 632 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF33A-202 - 699 2.1e-41 137.0 152.2 18 18 1.6e-05 0.024 15.4 0.9 1 23 637 659 637 660 0.96 C2H2-type zinc finger # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF33A-202.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF33A-202.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF33A-202.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF33A-202.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF33A-202.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:04:30 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZNF33A-203 - 811 4.3e-114 368.3 143.1 1 19 0.13 2e+02 2.7 0.7 16 26 141 151 130 151 0.84 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF33A-203 - 811 4.3e-114 368.3 143.1 2 19 8.7 1.3e+04 -3.1 0.6 5 13 182 190 181 191 0.79 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF33A-203 - 811 4.3e-114 368.3 143.1 3 19 9.4e-05 0.14 12.6 0.4 10 25 324 339 317 340 0.83 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF33A-203 - 811 4.3e-114 368.3 143.1 4 19 5.6e-12 8.4e-09 35.5 0.8 1 24 343 366 343 368 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF33A-203 - 811 4.3e-114 368.3 143.1 5 19 1.7e-12 2.5e-09 37.1 2.1 1 26 371 396 371 396 0.97 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF33A-203 - 811 4.3e-114 368.3 143.1 6 19 2.4e-11 3.6e-08 33.5 0.4 1 24 399 422 399 422 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF33A-203 - 811 4.3e-114 368.3 143.1 7 19 2.4e-10 3.7e-07 30.3 1.4 1 24 427 450 427 451 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF33A-203 - 811 4.3e-114 368.3 143.1 8 19 1.1e-10 1.7e-07 31.4 1.7 1 25 455 479 455 480 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF33A-203 - 811 4.3e-114 368.3 143.1 9 19 4.1e-09 6.1e-06 26.4 0.6 1 25 483 507 483 508 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF33A-203 - 811 4.3e-114 368.3 143.1 10 19 1.3e-08 1.9e-05 24.9 0.4 2 24 512 534 512 534 0.98 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF33A-203 - 811 4.3e-114 368.3 143.1 11 19 3.7e-11 5.5e-08 32.9 1.4 1 26 539 564 539 564 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF33A-203 - 811 4.3e-114 368.3 143.1 12 19 6.1e-10 9.1e-07 29.0 2.4 2 24 568 590 567 592 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF33A-203 - 811 4.3e-114 368.3 143.1 13 19 2.7e-11 4e-08 33.3 1.6 2 24 596 618 595 620 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF33A-203 - 811 4.3e-114 368.3 143.1 14 19 2.1e-09 3.2e-06 27.3 2.4 2 24 624 646 623 648 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF33A-203 - 811 4.3e-114 368.3 143.1 15 19 6.4e-10 9.6e-07 29.0 0.6 2 24 652 674 651 674 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF33A-203 - 811 4.3e-114 368.3 143.1 16 19 2.6e-10 3.8e-07 30.2 2.8 2 26 680 704 679 704 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF33A-203 - 811 4.3e-114 368.3 143.1 17 19 0.00085 1.3 9.6 2.3 2 24 708 730 707 732 0.90 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF33A-203 - 811 4.3e-114 368.3 143.1 18 19 1.9e-11 2.8e-08 33.8 0.7 2 25 736 759 735 760 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF33A-203 - 811 4.3e-114 368.3 143.1 19 19 0.3 4.5e+02 1.6 0.0 1 13 763 775 763 781 0.89 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZNF33A-203 - 811 2e-91 295.7 154.5 1 17 0.0023 3.4 8.3 0.2 2 17 141 156 140 157 0.90 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF33A-203 - 811 2e-91 295.7 154.5 2 17 2.1e-07 0.00032 21.0 1.1 1 23 329 351 329 351 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF33A-203 - 811 2e-91 295.7 154.5 3 17 1.1e-07 0.00016 22.0 0.9 1 23 357 379 357 379 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF33A-203 - 811 2e-91 295.7 154.5 4 17 3.1e-09 4.6e-06 26.8 1.4 1 23 385 407 385 407 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF33A-203 - 811 2e-91 295.7 154.5 5 17 3.8e-09 5.7e-06 26.5 3.9 1 23 413 435 413 435 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF33A-203 - 811 2e-91 295.7 154.5 6 17 1.2e-08 1.8e-05 25.0 2.9 1 23 441 463 441 463 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF33A-203 - 811 2e-91 295.7 154.5 7 17 5.4e-09 8e-06 26.0 0.5 1 23 469 491 469 491 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF33A-203 - 811 2e-91 295.7 154.5 8 17 7.1e-08 0.00011 22.5 1.7 1 23 497 519 497 519 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF33A-203 - 811 2e-91 295.7 154.5 9 17 5.9e-08 8.8e-05 22.8 2.8 1 23 525 547 525 547 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF33A-203 - 811 2e-91 295.7 154.5 10 17 8.8e-08 0.00013 22.2 3.3 1 23 553 575 553 575 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF33A-203 - 811 2e-91 295.7 154.5 11 17 4.8e-08 7.1e-05 23.0 3.8 1 23 581 603 581 603 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF33A-203 - 811 2e-91 295.7 154.5 12 17 2.5e-09 3.7e-06 27.1 0.6 1 23 609 631 609 631 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF33A-203 - 811 2e-91 295.7 154.5 13 17 4.3e-09 6.5e-06 26.3 3.3 1 23 637 659 637 659 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF33A-203 - 811 2e-91 295.7 154.5 14 17 9.9e-06 0.015 15.7 2.5 1 23 665 687 665 687 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF33A-203 - 811 2e-91 295.7 154.5 15 17 1.5e-07 0.00023 21.5 4.6 1 23 693 715 693 715 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF33A-203 - 811 2e-91 295.7 154.5 16 17 4.2e-08 6.2e-05 23.2 2.1 2 23 722 743 721 743 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF33A-203 - 811 2e-91 295.7 154.5 17 17 2.9e-09 4.3e-06 26.9 2.1 1 23 749 771 749 771 0.99 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZNF33A-203 - 811 4.3e-40 132.9 152.2 1 18 0.014 20 6.3 0.4 2 16 141 155 140 157 0.89 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF33A-203 - 811 4.3e-40 132.9 152.2 2 18 3.1 4.6e+03 -1.0 0.1 9 22 193 206 191 207 0.80 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF33A-203 - 811 4.3e-40 132.9 152.2 3 18 2.4e-05 0.036 14.9 1.5 1 23 329 351 329 352 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF33A-203 - 811 4.3e-40 132.9 152.2 4 18 1.4e-05 0.022 15.6 1.0 1 23 357 379 357 380 0.97 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF33A-203 - 811 4.3e-40 132.9 152.2 5 18 7.5e-05 0.11 13.4 1.4 1 23 385 407 385 408 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF33A-203 - 811 4.3e-40 132.9 152.2 6 18 4.4e-06 0.0065 17.2 2.8 1 23 413 435 413 436 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF33A-203 - 811 4.3e-40 132.9 152.2 7 18 3.7e-05 0.056 14.3 2.4 1 23 441 463 441 464 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF33A-203 - 811 4.3e-40 132.9 152.2 8 18 7.1e-06 0.011 16.5 0.4 1 23 469 491 469 492 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF33A-203 - 811 4.3e-40 132.9 152.2 9 18 0.00067 1 10.4 1.1 1 23 497 519 497 520 0.81 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF33A-203 - 811 4.3e-40 132.9 152.2 10 18 2.7e-05 0.041 14.7 2.3 1 23 525 547 525 548 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF33A-203 - 811 4.3e-40 132.9 152.2 11 18 1.2e-05 0.018 15.9 2.9 1 23 553 575 553 576 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF33A-203 - 811 4.3e-40 132.9 152.2 12 18 0.0024 3.5 8.7 2.2 1 23 581 603 581 604 0.87 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF33A-203 - 811 4.3e-40 132.9 152.2 13 18 6.9e-05 0.1 13.5 0.4 1 23 609 631 609 632 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF33A-203 - 811 4.3e-40 132.9 152.2 14 18 4.4e-05 0.065 14.1 3.1 1 23 637 659 637 660 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF33A-203 - 811 4.3e-40 132.9 152.2 15 18 2.5e-05 0.037 14.8 2.4 1 23 665 687 665 688 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF33A-203 - 811 4.3e-40 132.9 152.2 16 18 0.0016 2.4 9.2 3.8 1 23 693 715 693 716 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF33A-203 - 811 4.3e-40 132.9 152.2 17 18 0.00017 0.26 12.2 2.1 2 23 722 743 721 744 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF33A-203 - 811 4.3e-40 132.9 152.2 18 18 1.9e-05 0.029 15.2 0.9 1 23 749 771 749 772 0.96 C2H2-type zinc finger KRAB PF01352.27 42 ZNF33A-203 - 811 5.5e-26 89.9 0.2 1 1 7.5e-29 1.1e-25 88.9 0.2 1 42 11 52 11 52 0.99 KRAB box # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF33A-203.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF33A-203.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF33A-203.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF33A-203.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF33A-203.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:04:31 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZNF33A-204 - 810 4.2e-114 368.4 143.1 1 19 0.13 2e+02 2.7 0.7 16 26 140 150 129 150 0.84 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF33A-204 - 810 4.2e-114 368.4 143.1 2 19 8.7 1.3e+04 -3.1 0.6 5 13 181 189 180 190 0.79 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF33A-204 - 810 4.2e-114 368.4 143.1 3 19 9.4e-05 0.14 12.6 0.4 10 25 323 338 316 339 0.83 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF33A-204 - 810 4.2e-114 368.4 143.1 4 19 5.6e-12 8.4e-09 35.5 0.8 1 24 342 365 342 367 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF33A-204 - 810 4.2e-114 368.4 143.1 5 19 1.7e-12 2.5e-09 37.1 2.1 1 26 370 395 370 395 0.97 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF33A-204 - 810 4.2e-114 368.4 143.1 6 19 2.4e-11 3.6e-08 33.5 0.4 1 24 398 421 398 421 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF33A-204 - 810 4.2e-114 368.4 143.1 7 19 2.4e-10 3.7e-07 30.3 1.4 1 24 426 449 426 450 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF33A-204 - 810 4.2e-114 368.4 143.1 8 19 1.1e-10 1.7e-07 31.4 1.7 1 25 454 478 454 479 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF33A-204 - 810 4.2e-114 368.4 143.1 9 19 4.1e-09 6.1e-06 26.4 0.6 1 25 482 506 482 507 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF33A-204 - 810 4.2e-114 368.4 143.1 10 19 1.3e-08 1.9e-05 24.9 0.4 2 24 511 533 511 533 0.98 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF33A-204 - 810 4.2e-114 368.4 143.1 11 19 3.7e-11 5.5e-08 32.9 1.4 1 26 538 563 538 563 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF33A-204 - 810 4.2e-114 368.4 143.1 12 19 6.1e-10 9.1e-07 29.0 2.4 2 24 567 589 566 591 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF33A-204 - 810 4.2e-114 368.4 143.1 13 19 2.7e-11 4e-08 33.3 1.6 2 24 595 617 594 619 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF33A-204 - 810 4.2e-114 368.4 143.1 14 19 2.1e-09 3.2e-06 27.3 2.4 2 24 623 645 622 647 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF33A-204 - 810 4.2e-114 368.4 143.1 15 19 6.4e-10 9.5e-07 29.0 0.6 2 24 651 673 650 673 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF33A-204 - 810 4.2e-114 368.4 143.1 16 19 2.6e-10 3.8e-07 30.2 2.8 2 26 679 703 678 703 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF33A-204 - 810 4.2e-114 368.4 143.1 17 19 0.00085 1.3 9.6 2.3 2 24 707 729 706 731 0.90 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF33A-204 - 810 4.2e-114 368.4 143.1 18 19 1.9e-11 2.8e-08 33.8 0.7 2 25 735 758 734 759 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF33A-204 - 810 4.2e-114 368.4 143.1 19 19 0.3 4.4e+02 1.6 0.0 1 13 762 774 762 780 0.89 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZNF33A-204 - 810 1.9e-91 295.7 154.5 1 17 0.0023 3.4 8.3 0.2 2 17 140 155 139 156 0.90 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF33A-204 - 810 1.9e-91 295.7 154.5 2 17 2.1e-07 0.00032 21.0 1.1 1 23 328 350 328 350 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF33A-204 - 810 1.9e-91 295.7 154.5 3 17 1.1e-07 0.00016 22.0 0.9 1 23 356 378 356 378 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF33A-204 - 810 1.9e-91 295.7 154.5 4 17 3e-09 4.6e-06 26.8 1.4 1 23 384 406 384 406 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF33A-204 - 810 1.9e-91 295.7 154.5 5 17 3.8e-09 5.7e-06 26.5 3.9 1 23 412 434 412 434 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF33A-204 - 810 1.9e-91 295.7 154.5 6 17 1.2e-08 1.8e-05 25.0 2.9 1 23 440 462 440 462 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF33A-204 - 810 1.9e-91 295.7 154.5 7 17 5.4e-09 8e-06 26.0 0.5 1 23 468 490 468 490 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF33A-204 - 810 1.9e-91 295.7 154.5 8 17 7.1e-08 0.00011 22.5 1.7 1 23 496 518 496 518 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF33A-204 - 810 1.9e-91 295.7 154.5 9 17 5.9e-08 8.7e-05 22.8 2.8 1 23 524 546 524 546 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF33A-204 - 810 1.9e-91 295.7 154.5 10 17 8.8e-08 0.00013 22.2 3.3 1 23 552 574 552 574 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF33A-204 - 810 1.9e-91 295.7 154.5 11 17 4.8e-08 7.1e-05 23.0 3.8 1 23 580 602 580 602 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF33A-204 - 810 1.9e-91 295.7 154.5 12 17 2.5e-09 3.7e-06 27.1 0.6 1 23 608 630 608 630 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF33A-204 - 810 1.9e-91 295.7 154.5 13 17 4.3e-09 6.5e-06 26.3 3.3 1 23 636 658 636 658 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF33A-204 - 810 1.9e-91 295.7 154.5 14 17 9.9e-06 0.015 15.7 2.5 1 23 664 686 664 686 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF33A-204 - 810 1.9e-91 295.7 154.5 15 17 1.5e-07 0.00023 21.5 4.6 1 23 692 714 692 714 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF33A-204 - 810 1.9e-91 295.7 154.5 16 17 4.1e-08 6.2e-05 23.2 2.1 2 23 721 742 720 742 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF33A-204 - 810 1.9e-91 295.7 154.5 17 17 2.9e-09 4.3e-06 26.9 2.1 1 23 748 770 748 770 0.99 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZNF33A-204 - 810 4.2e-40 132.9 152.2 1 18 0.014 20 6.3 0.4 2 16 140 154 139 156 0.89 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF33A-204 - 810 4.2e-40 132.9 152.2 2 18 3.1 4.6e+03 -1.0 0.1 9 22 192 205 190 206 0.80 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF33A-204 - 810 4.2e-40 132.9 152.2 3 18 2.4e-05 0.036 14.9 1.5 1 23 328 350 328 351 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF33A-204 - 810 4.2e-40 132.9 152.2 4 18 1.4e-05 0.022 15.6 1.0 1 23 356 378 356 379 0.97 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF33A-204 - 810 4.2e-40 132.9 152.2 5 18 7.5e-05 0.11 13.4 1.4 1 23 384 406 384 407 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF33A-204 - 810 4.2e-40 132.9 152.2 6 18 4.3e-06 0.0065 17.2 2.8 1 23 412 434 412 435 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF33A-204 - 810 4.2e-40 132.9 152.2 7 18 3.7e-05 0.056 14.3 2.4 1 23 440 462 440 463 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF33A-204 - 810 4.2e-40 132.9 152.2 8 18 7.1e-06 0.011 16.6 0.4 1 23 468 490 468 491 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF33A-204 - 810 4.2e-40 132.9 152.2 9 18 0.00067 1 10.4 1.1 1 23 496 518 496 519 0.81 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF33A-204 - 810 4.2e-40 132.9 152.2 10 18 2.7e-05 0.041 14.7 2.3 1 23 524 546 524 547 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF33A-204 - 810 4.2e-40 132.9 152.2 11 18 1.2e-05 0.018 15.9 2.9 1 23 552 574 552 575 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF33A-204 - 810 4.2e-40 132.9 152.2 12 18 0.0023 3.5 8.7 2.2 1 23 580 602 580 603 0.87 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF33A-204 - 810 4.2e-40 132.9 152.2 13 18 6.9e-05 0.1 13.5 0.4 1 23 608 630 608 631 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF33A-204 - 810 4.2e-40 132.9 152.2 14 18 4.4e-05 0.065 14.1 3.1 1 23 636 658 636 659 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF33A-204 - 810 4.2e-40 132.9 152.2 15 18 2.5e-05 0.037 14.8 2.4 1 23 664 686 664 687 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF33A-204 - 810 4.2e-40 132.9 152.2 16 18 0.0016 2.4 9.2 3.8 1 23 692 714 692 715 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF33A-204 - 810 4.2e-40 132.9 152.2 17 18 0.00017 0.26 12.2 2.1 2 23 721 742 720 743 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF33A-204 - 810 4.2e-40 132.9 152.2 18 18 1.9e-05 0.029 15.2 0.9 1 23 748 770 748 771 0.96 C2H2-type zinc finger KRAB PF01352.27 42 ZNF33A-204 - 810 5.5e-26 89.9 0.2 1 1 7.5e-29 1.1e-25 88.9 0.2 1 42 11 52 11 52 0.99 KRAB box # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF33A-204.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF33A-204.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF33A-204.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF33A-204.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF33A-204.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:04:32 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- KRAB PF01352.27 42 ZNF33A-205 - 138 4.8e-27 93.3 0.2 1 1 4.6e-31 8.3e-27 92.6 0.2 1 42 11 52 11 52 0.99 KRAB box # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF33A-205.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF33A-205.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF33A-205.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF33A-205.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF33A-205.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:04:32 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- KRAB PF01352.27 42 ZNF33A-206 - 101 2.9e-27 94.0 0.2 1 1 2.4e-31 4.3e-27 93.5 0.2 1 42 11 52 11 52 0.99 KRAB box # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF33A-206.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF33A-206.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF33A-206.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF33A-206.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF33A-206.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:04:32 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF33A-207.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF33A-207.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF33A-207.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF33A-207.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF33A-207.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:04:33 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZNF33A-208 - 817 5e-114 368.1 143.1 1 19 0.13 2e+02 2.7 0.7 16 26 147 157 136 157 0.84 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF33A-208 - 817 5e-114 368.1 143.1 2 19 8.8 1.3e+04 -3.1 0.6 5 13 188 196 187 197 0.79 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF33A-208 - 817 5e-114 368.1 143.1 3 19 9.5e-05 0.14 12.6 0.4 10 25 330 345 323 346 0.83 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF33A-208 - 817 5e-114 368.1 143.1 4 19 5.7e-12 8.5e-09 35.5 0.8 1 24 349 372 349 374 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF33A-208 - 817 5e-114 368.1 143.1 5 19 1.7e-12 2.5e-09 37.1 2.1 1 26 377 402 377 402 0.97 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF33A-208 - 817 5e-114 368.1 143.1 6 19 2.4e-11 3.6e-08 33.5 0.4 1 24 405 428 405 428 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF33A-208 - 817 5e-114 368.1 143.1 7 19 2.5e-10 3.7e-07 30.3 1.4 1 24 433 456 433 457 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF33A-208 - 817 5e-114 368.1 143.1 8 19 1.1e-10 1.7e-07 31.4 1.7 1 25 461 485 461 486 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF33A-208 - 817 5e-114 368.1 143.1 9 19 4.1e-09 6.1e-06 26.4 0.6 1 25 489 513 489 514 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF33A-208 - 817 5e-114 368.1 143.1 10 19 1.3e-08 1.9e-05 24.9 0.4 2 24 518 540 518 540 0.98 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF33A-208 - 817 5e-114 368.1 143.1 11 19 3.7e-11 5.6e-08 32.9 1.4 1 26 545 570 545 570 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF33A-208 - 817 5e-114 368.1 143.1 12 19 6.2e-10 9.2e-07 29.0 2.4 2 24 574 596 573 598 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF33A-208 - 817 5e-114 368.1 143.1 13 19 2.7e-11 4e-08 33.3 1.6 2 24 602 624 601 626 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF33A-208 - 817 5e-114 368.1 143.1 14 19 2.2e-09 3.2e-06 27.3 2.4 2 24 630 652 629 654 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF33A-208 - 817 5e-114 368.1 143.1 15 19 6.5e-10 9.6e-07 29.0 0.6 2 24 658 680 657 680 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF33A-208 - 817 5e-114 368.1 143.1 16 19 2.6e-10 3.9e-07 30.2 2.8 2 26 686 710 685 710 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF33A-208 - 817 5e-114 368.1 143.1 17 19 0.00086 1.3 9.6 2.3 2 24 714 736 713 738 0.90 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF33A-208 - 817 5e-114 368.1 143.1 18 19 1.9e-11 2.8e-08 33.8 0.7 2 25 742 765 741 766 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF33A-208 - 817 5e-114 368.1 143.1 19 19 0.3 4.5e+02 1.6 0.0 1 13 769 781 769 787 0.89 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZNF33A-208 - 817 2.3e-91 295.5 154.5 1 17 0.0023 3.4 8.3 0.2 2 17 147 162 146 163 0.90 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF33A-208 - 817 2.3e-91 295.5 154.5 2 17 2.1e-07 0.00032 21.0 1.1 1 23 335 357 335 357 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF33A-208 - 817 2.3e-91 295.5 154.5 3 17 1.1e-07 0.00016 21.9 0.9 1 23 363 385 363 385 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF33A-208 - 817 2.3e-91 295.5 154.5 4 17 3.1e-09 4.6e-06 26.8 1.4 1 23 391 413 391 413 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF33A-208 - 817 2.3e-91 295.5 154.5 5 17 3.8e-09 5.7e-06 26.5 3.9 1 23 419 441 419 441 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF33A-208 - 817 2.3e-91 295.5 154.5 6 17 1.2e-08 1.8e-05 24.9 2.9 1 23 447 469 447 469 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF33A-208 - 817 2.3e-91 295.5 154.5 7 17 5.4e-09 8.1e-06 26.0 0.5 1 23 475 497 475 497 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF33A-208 - 817 2.3e-91 295.5 154.5 8 17 7.1e-08 0.00011 22.5 1.7 1 23 503 525 503 525 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF33A-208 - 817 2.3e-91 295.5 154.5 9 17 5.9e-08 8.8e-05 22.7 2.8 1 23 531 553 531 553 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF33A-208 - 817 2.3e-91 295.5 154.5 10 17 8.9e-08 0.00013 22.2 3.3 1 23 559 581 559 581 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF33A-208 - 817 2.3e-91 295.5 154.5 11 17 4.8e-08 7.2e-05 23.0 3.8 1 23 587 609 587 609 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF33A-208 - 817 2.3e-91 295.5 154.5 12 17 2.5e-09 3.7e-06 27.1 0.6 1 23 615 637 615 637 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF33A-208 - 817 2.3e-91 295.5 154.5 13 17 4.4e-09 6.5e-06 26.3 3.3 1 23 643 665 643 665 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF33A-208 - 817 2.3e-91 295.5 154.5 14 17 1e-05 0.015 15.7 2.5 1 23 671 693 671 693 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF33A-208 - 817 2.3e-91 295.5 154.5 15 17 1.5e-07 0.00023 21.4 4.6 1 23 699 721 699 721 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF33A-208 - 817 2.3e-91 295.5 154.5 16 17 4.2e-08 6.3e-05 23.2 2.1 2 23 728 749 727 749 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF33A-208 - 817 2.3e-91 295.5 154.5 17 17 2.9e-09 4.4e-06 26.9 2.1 1 23 755 777 755 777 0.99 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZNF33A-208 - 817 5.1e-40 132.7 152.2 1 18 0.014 20 6.3 0.4 2 16 147 161 146 163 0.89 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF33A-208 - 817 5.1e-40 132.7 152.2 2 18 3.1 4.7e+03 -1.0 0.1 9 22 199 212 197 213 0.80 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF33A-208 - 817 5.1e-40 132.7 152.2 3 18 2.4e-05 0.036 14.9 1.5 1 23 335 357 335 358 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF33A-208 - 817 5.1e-40 132.7 152.2 4 18 1.5e-05 0.022 15.6 1.0 1 23 363 385 363 386 0.97 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF33A-208 - 817 5.1e-40 132.7 152.2 5 18 7.5e-05 0.11 13.4 1.4 1 23 391 413 391 414 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF33A-208 - 817 5.1e-40 132.7 152.2 6 18 4.4e-06 0.0066 17.2 2.8 1 23 419 441 419 442 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF33A-208 - 817 5.1e-40 132.7 152.2 7 18 3.8e-05 0.056 14.3 2.4 1 23 447 469 447 470 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF33A-208 - 817 5.1e-40 132.7 152.2 8 18 7.2e-06 0.011 16.5 0.4 1 23 475 497 475 498 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF33A-208 - 817 5.1e-40 132.7 152.2 9 18 0.00067 1 10.4 1.1 1 23 503 525 503 526 0.81 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF33A-208 - 817 5.1e-40 132.7 152.2 10 18 2.8e-05 0.041 14.7 2.3 1 23 531 553 531 554 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF33A-208 - 817 5.1e-40 132.7 152.2 11 18 1.2e-05 0.018 15.8 2.9 1 23 559 581 559 582 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF33A-208 - 817 5.1e-40 132.7 152.2 12 18 0.0024 3.5 8.7 2.2 1 23 587 609 587 610 0.87 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF33A-208 - 817 5.1e-40 132.7 152.2 13 18 7e-05 0.1 13.5 0.4 1 23 615 637 615 638 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF33A-208 - 817 5.1e-40 132.7 152.2 14 18 4.4e-05 0.066 14.1 3.1 1 23 643 665 643 666 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF33A-208 - 817 5.1e-40 132.7 152.2 15 18 2.5e-05 0.038 14.8 2.4 1 23 671 693 671 694 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF33A-208 - 817 5.1e-40 132.7 152.2 16 18 0.0016 2.4 9.2 3.8 1 23 699 721 699 722 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF33A-208 - 817 5.1e-40 132.7 152.2 17 18 0.00017 0.26 12.2 2.1 2 23 728 749 727 750 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF33A-208 - 817 5.1e-40 132.7 152.2 18 18 1.9e-05 0.029 15.2 0.9 1 23 755 777 755 778 0.96 C2H2-type zinc finger KRAB PF01352.27 42 ZNF33A-208 - 817 5.6e-26 89.9 0.2 1 1 7.6e-29 1.1e-25 88.9 0.2 1 42 18 59 18 59 0.99 KRAB box # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF33A-208.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF33A-208.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF33A-208.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF33A-208.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF33A-208.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:04:33 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZNF33B-201 - 778 1.6e-121 391.8 133.5 1 17 0.00015 0.23 11.9 0.3 11 25 325 339 322 340 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF33B-201 - 778 1.6e-121 391.8 133.5 2 17 7.4e-11 1.1e-07 31.9 2.4 1 25 343 367 343 368 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF33B-201 - 778 1.6e-121 391.8 133.5 3 17 1.6e-12 2.4e-09 37.2 2.1 1 26 371 396 371 396 0.97 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF33B-201 - 778 1.6e-121 391.8 133.5 4 17 1.5e-11 2.3e-08 34.1 0.4 1 24 399 422 399 424 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF33B-201 - 778 1.6e-121 391.8 133.5 5 17 2.7e-11 4e-08 33.3 1.4 1 24 427 450 427 450 0.97 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF33B-201 - 778 1.6e-121 391.8 133.5 6 17 3.5e-10 5.3e-07 29.8 1.6 1 24 455 478 455 478 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF33B-201 - 778 1.6e-121 391.8 133.5 7 17 9e-10 1.3e-06 28.5 2.7 1 25 483 507 483 508 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF33B-201 - 778 1.6e-121 391.8 133.5 8 17 1.2e-09 1.7e-06 28.1 0.4 2 24 512 534 511 534 0.98 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF33B-201 - 778 1.6e-121 391.8 133.5 9 17 2.8e-11 4.1e-08 33.3 1.3 2 26 540 564 539 564 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF33B-201 - 778 1.6e-121 391.8 133.5 10 17 5.8e-10 8.7e-07 29.1 2.4 2 24 568 590 567 592 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF33B-201 - 778 1.6e-121 391.8 133.5 11 17 5e-11 7.5e-08 32.5 2.1 2 24 596 618 595 618 0.97 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF33B-201 - 778 1.6e-121 391.8 133.5 12 17 8.5e-10 1.3e-06 28.6 1.7 2 24 624 646 623 648 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF33B-201 - 778 1.6e-121 391.8 133.5 13 17 6.1e-10 9.1e-07 29.0 0.6 2 24 652 674 651 674 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF33B-201 - 778 1.6e-121 391.8 133.5 14 17 1.6e-11 2.4e-08 34.0 1.1 2 26 680 704 679 704 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF33B-201 - 778 1.6e-121 391.8 133.5 15 17 0.00081 1.2 9.7 2.3 2 24 708 730 707 732 0.90 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF33B-201 - 778 1.6e-121 391.8 133.5 16 17 7.6e-12 1.1e-08 35.1 1.1 1 25 735 759 735 760 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF33B-201 - 778 1.6e-121 391.8 133.5 17 17 0.00063 0.94 10.0 0.1 1 16 763 778 763 778 0.90 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZNF33B-201 - 778 6.3e-88 284.6 169.5 1 18 1.5 2.3e+03 -0.6 0.2 7 17 253 263 245 266 0.77 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF33B-201 - 778 6.3e-88 284.6 169.5 2 18 1.1 1.6e+03 -0.1 0.6 5 19 279 293 278 293 0.94 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF33B-201 - 778 6.3e-88 284.6 169.5 3 18 2e-07 0.0003 21.1 1.1 1 23 329 351 329 351 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF33B-201 - 778 6.3e-88 284.6 169.5 4 18 1.3e-07 0.00019 21.7 1.6 1 23 357 379 357 379 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF33B-201 - 778 6.3e-88 284.6 169.5 5 18 2.9e-09 4.3e-06 26.9 1.4 1 23 385 407 385 407 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF33B-201 - 778 6.3e-88 284.6 169.5 6 18 1.7e-09 2.6e-06 27.6 2.0 1 23 413 435 413 435 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF33B-201 - 778 6.3e-88 284.6 169.5 7 18 4.7e-08 7e-05 23.1 5.2 1 23 441 463 441 463 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF33B-201 - 778 6.3e-88 284.6 169.5 8 18 1.8e-08 2.7e-05 24.4 5.5 1 23 469 491 469 491 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF33B-201 - 778 6.3e-88 284.6 169.5 9 18 7.6e-07 0.0011 19.3 1.4 1 23 497 519 497 519 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF33B-201 - 778 6.3e-88 284.6 169.5 10 18 1.2e-07 0.00018 21.8 2.7 1 23 525 547 525 547 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF33B-201 - 778 6.3e-88 284.6 169.5 11 18 8.4e-08 0.00013 22.3 3.3 1 23 553 575 553 575 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF33B-201 - 778 6.3e-88 284.6 169.5 12 18 4.5e-08 6.8e-05 23.1 3.8 1 23 581 603 581 603 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF33B-201 - 778 6.3e-88 284.6 169.5 13 18 2.8e-09 4.2e-06 26.9 2.7 1 23 609 631 609 631 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF33B-201 - 778 6.3e-88 284.6 169.5 14 18 4.7e-09 7e-06 26.2 2.3 1 23 637 659 637 659 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF33B-201 - 778 6.3e-88 284.6 169.5 15 18 1.3e-07 0.00019 21.7 1.7 1 23 665 687 665 687 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF33B-201 - 778 6.3e-88 284.6 169.5 16 18 1.1e-08 1.6e-05 25.1 3.8 1 23 693 715 693 715 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF33B-201 - 778 6.3e-88 284.6 169.5 17 18 1.6e-08 2.4e-05 24.5 2.6 2 23 722 743 721 743 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF33B-201 - 778 6.3e-88 284.6 169.5 18 18 1.9e-09 2.8e-06 27.4 1.9 1 23 749 771 749 771 0.99 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZNF33B-201 - 778 2.9e-39 130.3 156.7 1 18 1.1 1.7e+03 0.4 0.1 7 20 253 266 247 267 0.89 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF33B-201 - 778 2.9e-39 130.3 156.7 2 18 7.6 1.1e+04 -2.2 0.4 6 19 280 293 278 293 0.63 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF33B-201 - 778 2.9e-39 130.3 156.7 3 18 2.3e-05 0.034 15.0 1.5 1 23 329 351 329 352 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF33B-201 - 778 2.9e-39 130.3 156.7 4 18 1.7e-06 0.0025 18.5 1.5 1 23 357 379 357 380 0.97 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF33B-201 - 778 2.9e-39 130.3 156.7 5 18 7.1e-05 0.11 13.4 1.4 1 23 385 407 385 408 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF33B-201 - 778 2.9e-39 130.3 156.7 6 18 9.6e-06 0.014 16.1 1.1 1 23 413 435 413 436 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF33B-201 - 778 2.9e-39 130.3 156.7 7 18 0.00017 0.25 12.3 4.3 1 23 441 463 441 464 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF33B-201 - 778 2.9e-39 130.3 156.7 8 18 2.7e-05 0.041 14.7 4.4 1 23 469 491 469 492 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF33B-201 - 778 2.9e-39 130.3 156.7 9 18 0.0013 1.9 9.6 1.0 1 23 497 519 497 520 0.85 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF33B-201 - 778 2.9e-39 130.3 156.7 10 18 5.1e-05 0.077 13.9 2.0 1 23 525 547 525 548 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF33B-201 - 778 2.9e-39 130.3 156.7 11 18 1.1e-05 0.017 15.9 2.9 1 23 553 575 553 576 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF33B-201 - 778 2.9e-39 130.3 156.7 12 18 0.0022 3.3 8.8 2.2 1 23 581 603 581 604 0.87 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF33B-201 - 778 2.9e-39 130.3 156.7 13 18 5.9e-06 0.0087 16.8 1.7 1 23 609 631 609 632 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF33B-201 - 778 2.9e-39 130.3 156.7 14 18 4.7e-05 0.07 14.0 2.4 1 23 637 659 637 660 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF33B-201 - 778 2.9e-39 130.3 156.7 15 18 3.2e-05 0.048 14.5 1.8 1 23 665 687 665 688 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF33B-201 - 778 2.9e-39 130.3 156.7 16 18 4.6e-05 0.068 14.0 3.3 1 23 693 715 693 716 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF33B-201 - 778 2.9e-39 130.3 156.7 17 18 0.00013 0.19 12.6 2.2 2 23 722 743 721 744 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF33B-201 - 778 2.9e-39 130.3 156.7 18 18 1.3e-05 0.02 15.7 0.8 1 23 749 771 749 772 0.96 C2H2-type zinc finger KRAB PF01352.27 42 ZNF33B-201 - 778 5.2e-26 90.0 0.2 1 1 7.2e-29 1.1e-25 89.0 0.2 1 42 11 52 11 52 0.99 KRAB box C1_4 PF07975.12 55 ZNF33B-201 - 778 3.2e-08 33.7 99.8 1 14 0.75 1.1e+03 -0.1 0.4 22 38 271 287 255 296 0.80 TFIIH C1-like domain C1_4 PF07975.12 55 ZNF33B-201 - 778 3.2e-08 33.7 99.8 2 14 0.26 3.9e+02 1.4 0.3 23 35 326 338 314 354 0.72 TFIIH C1-like domain C1_4 PF07975.12 55 ZNF33B-201 - 778 3.2e-08 33.7 99.8 3 14 0.16 2.3e+02 2.1 3.5 1 35 330 366 330 379 0.82 TFIIH C1-like domain C1_4 PF07975.12 55 ZNF33B-201 - 778 3.2e-08 33.7 99.8 4 14 0.014 20 5.5 2.6 1 45 358 404 358 410 0.75 TFIIH C1-like domain C1_4 PF07975.12 55 ZNF33B-201 - 778 3.2e-08 33.7 99.8 5 14 2.8e-06 0.0042 17.3 5.1 1 49 414 464 414 466 0.87 TFIIH C1-like domain C1_4 PF07975.12 55 ZNF33B-201 - 778 3.2e-08 33.7 99.8 6 14 0.15 2.3e+02 2.1 1.4 25 40 468 483 464 493 0.75 TFIIH C1-like domain C1_4 PF07975.12 55 ZNF33B-201 - 778 3.2e-08 33.7 99.8 7 14 1.7e-05 0.025 14.8 8.6 1 49 498 548 498 560 0.81 TFIIH C1-like domain C1_4 PF07975.12 55 ZNF33B-201 - 778 3.2e-08 33.7 99.8 8 14 0.91 1.4e+03 -0.4 0.4 25 35 552 562 546 576 0.85 TFIIH C1-like domain C1_4 PF07975.12 55 ZNF33B-201 - 778 3.2e-08 33.7 99.8 9 14 0.27 4.1e+02 1.3 2.7 2 35 555 590 554 605 0.69 TFIIH C1-like domain C1_4 PF07975.12 55 ZNF33B-201 - 778 3.2e-08 33.7 99.8 10 14 0.0018 2.7 8.3 5.3 2 48 583 631 582 634 0.76 TFIIH C1-like domain C1_4 PF07975.12 55 ZNF33B-201 - 778 3.2e-08 33.7 99.8 11 14 0.00077 1.1 9.5 1.8 21 49 632 660 622 662 0.82 TFIIH C1-like domain C1_4 PF07975.12 55 ZNF33B-201 - 778 3.2e-08 33.7 99.8 12 14 2.8e-05 0.042 14.1 0.4 23 49 662 688 658 690 0.88 TFIIH C1-like domain C1_4 PF07975.12 55 ZNF33B-201 - 778 3.2e-08 33.7 99.8 13 14 0.11 1.7e+02 2.5 0.8 25 49 692 716 688 722 0.83 TFIIH C1-like domain C1_4 PF07975.12 55 ZNF33B-201 - 778 3.2e-08 33.7 99.8 14 14 0.0013 2 8.7 2.3 2 48 723 771 722 773 0.81 TFIIH C1-like domain # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF33B-201.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF33B-201.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF33B-201.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF33B-201.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF33B-201.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:04:34 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF33B-202.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF33B-202.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF33B-202.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF33B-202.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF33B-202.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:04:34 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF33B-203.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF33B-203.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF33B-203.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF33B-203.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF33B-203.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:04:35 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- KRAB PF01352.27 42 ZNF33B-204 - 101 3.1e-27 94.0 0.2 1 1 2.4e-31 4.3e-27 93.5 0.2 1 42 11 52 11 52 0.99 KRAB box # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF33B-204.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF33B-204.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF33B-204.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF33B-204.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF33B-204.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:04:35 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF33B-205.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF33B-205.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF33B-205.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF33B-205.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF33B-205.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:04:35 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF33B-206.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF33B-206.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF33B-206.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF33B-206.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF33B-206.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:04:36 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF33B-207.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF33B-207.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF33B-207.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF33B-207.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF33B-207.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:04:38 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZNF33B-208 - 778 1.6e-121 391.8 133.5 1 17 0.00015 0.23 11.9 0.3 11 25 325 339 322 340 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF33B-208 - 778 1.6e-121 391.8 133.5 2 17 7.4e-11 1.1e-07 31.9 2.4 1 25 343 367 343 368 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF33B-208 - 778 1.6e-121 391.8 133.5 3 17 1.6e-12 2.4e-09 37.2 2.1 1 26 371 396 371 396 0.97 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF33B-208 - 778 1.6e-121 391.8 133.5 4 17 1.5e-11 2.3e-08 34.1 0.4 1 24 399 422 399 424 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF33B-208 - 778 1.6e-121 391.8 133.5 5 17 2.7e-11 4e-08 33.3 1.4 1 24 427 450 427 450 0.97 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF33B-208 - 778 1.6e-121 391.8 133.5 6 17 3.5e-10 5.3e-07 29.8 1.6 1 24 455 478 455 478 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF33B-208 - 778 1.6e-121 391.8 133.5 7 17 9e-10 1.3e-06 28.5 2.7 1 25 483 507 483 508 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF33B-208 - 778 1.6e-121 391.8 133.5 8 17 1.2e-09 1.7e-06 28.1 0.4 2 24 512 534 511 534 0.98 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF33B-208 - 778 1.6e-121 391.8 133.5 9 17 2.8e-11 4.1e-08 33.3 1.3 2 26 540 564 539 564 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF33B-208 - 778 1.6e-121 391.8 133.5 10 17 5.8e-10 8.7e-07 29.1 2.4 2 24 568 590 567 592 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF33B-208 - 778 1.6e-121 391.8 133.5 11 17 5e-11 7.5e-08 32.5 2.1 2 24 596 618 595 618 0.97 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF33B-208 - 778 1.6e-121 391.8 133.5 12 17 8.5e-10 1.3e-06 28.6 1.7 2 24 624 646 623 648 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF33B-208 - 778 1.6e-121 391.8 133.5 13 17 6.1e-10 9.1e-07 29.0 0.6 2 24 652 674 651 674 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF33B-208 - 778 1.6e-121 391.8 133.5 14 17 1.6e-11 2.4e-08 34.0 1.1 2 26 680 704 679 704 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF33B-208 - 778 1.6e-121 391.8 133.5 15 17 0.00081 1.2 9.7 2.3 2 24 708 730 707 732 0.90 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF33B-208 - 778 1.6e-121 391.8 133.5 16 17 7.6e-12 1.1e-08 35.1 1.1 1 25 735 759 735 760 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF33B-208 - 778 1.6e-121 391.8 133.5 17 17 0.00063 0.94 10.0 0.1 1 16 763 778 763 778 0.90 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZNF33B-208 - 778 6.3e-88 284.6 169.5 1 18 1.5 2.3e+03 -0.6 0.2 7 17 253 263 245 266 0.77 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF33B-208 - 778 6.3e-88 284.6 169.5 2 18 1.1 1.6e+03 -0.1 0.6 5 19 279 293 278 293 0.94 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF33B-208 - 778 6.3e-88 284.6 169.5 3 18 2e-07 0.0003 21.1 1.1 1 23 329 351 329 351 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF33B-208 - 778 6.3e-88 284.6 169.5 4 18 1.3e-07 0.00019 21.7 1.6 1 23 357 379 357 379 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF33B-208 - 778 6.3e-88 284.6 169.5 5 18 2.9e-09 4.3e-06 26.9 1.4 1 23 385 407 385 407 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF33B-208 - 778 6.3e-88 284.6 169.5 6 18 1.7e-09 2.6e-06 27.6 2.0 1 23 413 435 413 435 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF33B-208 - 778 6.3e-88 284.6 169.5 7 18 4.7e-08 7e-05 23.1 5.2 1 23 441 463 441 463 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF33B-208 - 778 6.3e-88 284.6 169.5 8 18 1.8e-08 2.7e-05 24.4 5.5 1 23 469 491 469 491 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF33B-208 - 778 6.3e-88 284.6 169.5 9 18 7.6e-07 0.0011 19.3 1.4 1 23 497 519 497 519 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF33B-208 - 778 6.3e-88 284.6 169.5 10 18 1.2e-07 0.00018 21.8 2.7 1 23 525 547 525 547 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF33B-208 - 778 6.3e-88 284.6 169.5 11 18 8.4e-08 0.00013 22.3 3.3 1 23 553 575 553 575 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF33B-208 - 778 6.3e-88 284.6 169.5 12 18 4.5e-08 6.8e-05 23.1 3.8 1 23 581 603 581 603 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF33B-208 - 778 6.3e-88 284.6 169.5 13 18 2.8e-09 4.2e-06 26.9 2.7 1 23 609 631 609 631 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF33B-208 - 778 6.3e-88 284.6 169.5 14 18 4.7e-09 7e-06 26.2 2.3 1 23 637 659 637 659 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF33B-208 - 778 6.3e-88 284.6 169.5 15 18 1.3e-07 0.00019 21.7 1.7 1 23 665 687 665 687 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF33B-208 - 778 6.3e-88 284.6 169.5 16 18 1.1e-08 1.6e-05 25.1 3.8 1 23 693 715 693 715 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF33B-208 - 778 6.3e-88 284.6 169.5 17 18 1.6e-08 2.4e-05 24.5 2.6 2 23 722 743 721 743 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF33B-208 - 778 6.3e-88 284.6 169.5 18 18 1.9e-09 2.8e-06 27.4 1.9 1 23 749 771 749 771 0.99 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZNF33B-208 - 778 2.9e-39 130.3 156.7 1 18 1.1 1.7e+03 0.4 0.1 7 20 253 266 247 267 0.89 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF33B-208 - 778 2.9e-39 130.3 156.7 2 18 7.6 1.1e+04 -2.2 0.4 6 19 280 293 278 293 0.63 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF33B-208 - 778 2.9e-39 130.3 156.7 3 18 2.3e-05 0.034 15.0 1.5 1 23 329 351 329 352 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF33B-208 - 778 2.9e-39 130.3 156.7 4 18 1.7e-06 0.0025 18.5 1.5 1 23 357 379 357 380 0.97 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF33B-208 - 778 2.9e-39 130.3 156.7 5 18 7.1e-05 0.11 13.4 1.4 1 23 385 407 385 408 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF33B-208 - 778 2.9e-39 130.3 156.7 6 18 9.6e-06 0.014 16.1 1.1 1 23 413 435 413 436 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF33B-208 - 778 2.9e-39 130.3 156.7 7 18 0.00017 0.25 12.3 4.3 1 23 441 463 441 464 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF33B-208 - 778 2.9e-39 130.3 156.7 8 18 2.7e-05 0.041 14.7 4.4 1 23 469 491 469 492 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF33B-208 - 778 2.9e-39 130.3 156.7 9 18 0.0013 1.9 9.6 1.0 1 23 497 519 497 520 0.85 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF33B-208 - 778 2.9e-39 130.3 156.7 10 18 5.1e-05 0.077 13.9 2.0 1 23 525 547 525 548 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF33B-208 - 778 2.9e-39 130.3 156.7 11 18 1.1e-05 0.017 15.9 2.9 1 23 553 575 553 576 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF33B-208 - 778 2.9e-39 130.3 156.7 12 18 0.0022 3.3 8.8 2.2 1 23 581 603 581 604 0.87 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF33B-208 - 778 2.9e-39 130.3 156.7 13 18 5.9e-06 0.0087 16.8 1.7 1 23 609 631 609 632 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF33B-208 - 778 2.9e-39 130.3 156.7 14 18 4.7e-05 0.07 14.0 2.4 1 23 637 659 637 660 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF33B-208 - 778 2.9e-39 130.3 156.7 15 18 3.2e-05 0.048 14.5 1.8 1 23 665 687 665 688 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF33B-208 - 778 2.9e-39 130.3 156.7 16 18 4.6e-05 0.068 14.0 3.3 1 23 693 715 693 716 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF33B-208 - 778 2.9e-39 130.3 156.7 17 18 0.00013 0.19 12.6 2.2 2 23 722 743 721 744 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF33B-208 - 778 2.9e-39 130.3 156.7 18 18 1.3e-05 0.02 15.7 0.8 1 23 749 771 749 772 0.96 C2H2-type zinc finger KRAB PF01352.27 42 ZNF33B-208 - 778 5.2e-26 90.0 0.2 1 1 7.2e-29 1.1e-25 89.0 0.2 1 42 11 52 11 52 0.99 KRAB box C1_4 PF07975.12 55 ZNF33B-208 - 778 3.2e-08 33.7 99.8 1 14 0.75 1.1e+03 -0.1 0.4 22 38 271 287 255 296 0.80 TFIIH C1-like domain C1_4 PF07975.12 55 ZNF33B-208 - 778 3.2e-08 33.7 99.8 2 14 0.26 3.9e+02 1.4 0.3 23 35 326 338 314 354 0.72 TFIIH C1-like domain C1_4 PF07975.12 55 ZNF33B-208 - 778 3.2e-08 33.7 99.8 3 14 0.16 2.3e+02 2.1 3.5 1 35 330 366 330 379 0.82 TFIIH C1-like domain C1_4 PF07975.12 55 ZNF33B-208 - 778 3.2e-08 33.7 99.8 4 14 0.014 20 5.5 2.6 1 45 358 404 358 410 0.75 TFIIH C1-like domain C1_4 PF07975.12 55 ZNF33B-208 - 778 3.2e-08 33.7 99.8 5 14 2.8e-06 0.0042 17.3 5.1 1 49 414 464 414 466 0.87 TFIIH C1-like domain C1_4 PF07975.12 55 ZNF33B-208 - 778 3.2e-08 33.7 99.8 6 14 0.15 2.3e+02 2.1 1.4 25 40 468 483 464 493 0.75 TFIIH C1-like domain C1_4 PF07975.12 55 ZNF33B-208 - 778 3.2e-08 33.7 99.8 7 14 1.7e-05 0.025 14.8 8.6 1 49 498 548 498 560 0.81 TFIIH C1-like domain C1_4 PF07975.12 55 ZNF33B-208 - 778 3.2e-08 33.7 99.8 8 14 0.91 1.4e+03 -0.4 0.4 25 35 552 562 546 576 0.85 TFIIH C1-like domain C1_4 PF07975.12 55 ZNF33B-208 - 778 3.2e-08 33.7 99.8 9 14 0.27 4.1e+02 1.3 2.7 2 35 555 590 554 605 0.69 TFIIH C1-like domain C1_4 PF07975.12 55 ZNF33B-208 - 778 3.2e-08 33.7 99.8 10 14 0.0018 2.7 8.3 5.3 2 48 583 631 582 634 0.76 TFIIH C1-like domain C1_4 PF07975.12 55 ZNF33B-208 - 778 3.2e-08 33.7 99.8 11 14 0.00077 1.1 9.5 1.8 21 49 632 660 622 662 0.82 TFIIH C1-like domain C1_4 PF07975.12 55 ZNF33B-208 - 778 3.2e-08 33.7 99.8 12 14 2.8e-05 0.042 14.1 0.4 23 49 662 688 658 690 0.88 TFIIH C1-like domain C1_4 PF07975.12 55 ZNF33B-208 - 778 3.2e-08 33.7 99.8 13 14 0.11 1.7e+02 2.5 0.8 25 49 692 716 688 722 0.83 TFIIH C1-like domain C1_4 PF07975.12 55 ZNF33B-208 - 778 3.2e-08 33.7 99.8 14 14 0.0013 2 8.7 2.3 2 48 723 771 722 773 0.81 TFIIH C1-like domain # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF33B-208.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF33B-208.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF33B-208.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF33B-208.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF33B-208.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:04:38 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-C2H2 PF00096.26 23 ZNF341-201 - 847 2.3e-35 119.1 113.2 1 13 0.0023 3.1 8.4 0.6 2 21 54 73 53 74 0.92 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF341-201 - 847 2.3e-35 119.1 113.2 2 13 1e-08 1.4e-05 25.3 2.2 2 23 316 337 315 337 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF341-201 - 847 2.3e-35 119.1 113.2 3 13 1.4e-06 0.0019 18.5 0.4 1 23 343 365 343 365 0.92 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF341-201 - 847 2.3e-35 119.1 113.2 4 13 0.00059 0.81 10.3 2.9 1 23 438 460 438 460 0.94 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF341-201 - 847 2.3e-35 119.1 113.2 5 13 0.005 6.8 7.3 0.4 1 23 466 490 466 490 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF341-201 - 847 2.3e-35 119.1 113.2 6 13 1.2e-06 0.0016 18.8 1.3 1 23 496 518 496 518 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF341-201 - 847 2.3e-35 119.1 113.2 7 13 0.0002 0.28 11.7 0.8 1 23 533 557 533 557 0.94 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF341-201 - 847 2.3e-35 119.1 113.2 8 13 0.002 2.8 8.6 4.1 1 20 559 578 559 581 0.91 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF341-201 - 847 2.3e-35 119.1 113.2 9 13 0.00029 0.4 11.2 6.0 1 23 587 609 587 609 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF341-201 - 847 2.3e-35 119.1 113.2 10 13 5.1e-07 0.0007 19.9 1.1 1 23 615 637 615 637 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF341-201 - 847 2.3e-35 119.1 113.2 11 13 1.6e-06 0.0022 18.3 1.4 1 23 643 670 643 670 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF341-201 - 847 2.3e-35 119.1 113.2 12 13 8.3e-07 0.0011 19.3 3.1 1 23 676 698 676 698 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF341-201 - 847 2.3e-35 119.1 113.2 13 13 0.0015 2 9.0 3.4 1 21 704 724 704 725 0.94 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZNF341-201 - 847 1.3e-29 100.3 103.4 1 13 0.0028 3.9 8.6 0.5 1 21 53 73 53 75 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF341-201 - 847 1.3e-29 100.3 103.4 2 13 1.7e-06 0.0023 18.6 1.4 2 23 316 337 315 338 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF341-201 - 847 1.3e-29 100.3 103.4 3 13 8.6e-06 0.012 16.4 0.5 1 23 343 365 343 366 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF341-201 - 847 1.3e-29 100.3 103.4 4 13 4.6e-05 0.063 14.1 3.0 1 23 438 460 438 461 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF341-201 - 847 1.3e-29 100.3 103.4 5 13 0.0051 7.1 7.8 0.5 1 23 466 490 466 491 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF341-201 - 847 1.3e-29 100.3 103.4 6 13 9.4e-06 0.013 16.3 1.0 1 23 496 518 496 519 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF341-201 - 847 1.3e-29 100.3 103.4 7 13 0.00092 1.3 10.1 0.3 1 22 533 554 533 555 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF341-201 - 847 1.3e-29 100.3 103.4 8 13 1.2e-06 0.0017 19.0 3.1 1 23 559 581 559 582 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF341-201 - 847 1.3e-29 100.3 103.4 9 13 0.053 73 4.6 5.1 1 23 587 609 587 610 0.78 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF341-201 - 847 1.3e-29 100.3 103.4 10 13 3.4e-06 0.0046 17.7 0.7 1 23 615 637 615 638 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF341-201 - 847 1.3e-29 100.3 103.4 11 13 0.00012 0.17 12.8 1.1 1 23 643 670 643 671 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF341-201 - 847 1.3e-29 100.3 103.4 12 13 0.0002 0.27 12.2 3.1 1 23 676 698 676 699 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF341-201 - 847 1.3e-29 100.3 103.4 13 13 0.017 24 6.1 0.9 1 19 704 722 704 723 0.93 C2H2-type zinc finger zf-H2C2_2 PF13465.6 26 ZNF341-201 - 847 5.1e-27 93.1 96.7 1 14 0.31 4.3e+02 1.6 0.4 15 26 53 64 49 64 0.83 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF341-201 - 847 5.1e-27 93.1 96.7 2 14 0.0017 2.4 8.7 1.6 14 26 314 326 308 326 0.80 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF341-201 - 847 5.1e-27 93.1 96.7 3 14 7.8e-12 1.1e-08 35.1 0.0 1 25 329 353 329 354 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF341-201 - 847 5.1e-27 93.1 96.7 4 14 0.64 8.8e+02 0.6 0.1 1 10 357 366 357 370 0.85 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF341-201 - 847 5.1e-27 93.1 96.7 5 14 0.044 61 4.3 0.1 15 26 438 449 430 449 0.89 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF341-201 - 847 5.1e-27 93.1 96.7 6 14 0.001 1.4 9.4 0.7 2 24 453 477 452 479 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF341-201 - 847 5.1e-27 93.1 96.7 7 14 0.00014 0.2 12.2 1.0 5 24 486 505 483 507 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF341-201 - 847 5.1e-27 93.1 96.7 8 14 0.41 5.7e+02 1.2 0.8 9 23 524 541 513 544 0.63 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF341-201 - 847 5.1e-27 93.1 96.7 9 14 0.17 2.4e+02 2.4 3.3 15 24 559 568 547 570 0.71 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF341-201 - 847 5.1e-27 93.1 96.7 10 14 0.00046 0.63 10.6 2.0 2 25 574 597 573 598 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF341-201 - 847 5.1e-27 93.1 96.7 11 14 1.1e-07 0.00015 22.0 1.1 2 25 602 625 601 626 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF341-201 - 847 5.1e-27 93.1 96.7 12 14 0.00014 0.2 12.2 4.2 2 25 630 658 629 659 0.87 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF341-201 - 847 5.1e-27 93.1 96.7 13 14 5.8e-07 0.00079 19.7 1.1 2 25 663 686 662 687 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF341-201 - 847 5.1e-27 93.1 96.7 14 14 0.00026 0.36 11.4 0.8 1 25 690 714 690 715 0.92 Zinc-finger double domain zf-C2H2_jaz PF12171.8 27 ZNF341-201 - 847 2.5e-08 34.0 72.0 1 12 0.087 1.2e+02 3.1 0.5 7 22 58 73 55 75 0.88 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF341-201 - 847 2.5e-08 34.0 72.0 2 12 6.5e-05 0.09 13.1 1.9 2 22 315 335 314 335 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF341-201 - 847 2.5e-08 34.0 72.0 3 12 0.0028 3.9 7.9 0.7 2 25 343 366 342 366 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF341-201 - 847 2.5e-08 34.0 72.0 4 12 0.4 5.5e+02 1.0 2.1 4 25 440 461 437 461 0.90 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF341-201 - 847 2.5e-08 34.0 72.0 5 12 0.2 2.7e+02 2.0 0.2 7 25 473 491 471 491 0.79 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF341-201 - 847 2.5e-08 34.0 72.0 6 12 0.0035 4.8 7.6 0.3 2 24 496 518 495 519 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF341-201 - 847 2.5e-08 34.0 72.0 7 12 0.0013 1.8 9.0 0.2 2 22 559 579 558 582 0.88 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF341-201 - 847 2.5e-08 34.0 72.0 8 12 0.001 1.4 9.3 2.9 2 20 587 605 586 605 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF341-201 - 847 2.5e-08 34.0 72.0 9 12 0.067 93 3.5 0.2 2 21 615 634 614 635 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF341-201 - 847 2.5e-08 34.0 72.0 10 12 0.0022 3 8.2 0.1 7 27 653 677 653 677 0.85 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF341-201 - 847 2.5e-08 34.0 72.0 11 12 0.0028 3.8 7.9 0.5 2 22 676 696 675 696 0.91 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF341-201 - 847 2.5e-08 34.0 72.0 12 12 0.0071 9.8 6.6 0.3 1 20 703 722 703 723 0.92 Zinc-finger double-stranded RNA-binding # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF341-201.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF341-201.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF341-201.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF341-201.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF341-201.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:04:39 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-C2H2 PF00096.26 23 ZNF341-202 - 854 2.6e-35 118.9 113.2 1 13 0.0021 3.2 8.4 0.6 2 21 54 73 53 74 0.92 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF341-202 - 854 2.6e-35 118.9 113.2 2 13 9.5e-09 1.4e-05 25.3 2.2 2 23 323 344 322 344 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF341-202 - 854 2.6e-35 118.9 113.2 3 13 1.3e-06 0.002 18.5 0.4 1 23 350 372 350 372 0.92 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF341-202 - 854 2.6e-35 118.9 113.2 4 13 0.00055 0.82 10.3 2.9 1 23 445 467 445 467 0.94 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF341-202 - 854 2.6e-35 118.9 113.2 5 13 0.0046 6.9 7.3 0.4 1 23 473 497 473 497 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF341-202 - 854 2.6e-35 118.9 113.2 6 13 1.1e-06 0.0016 18.8 1.3 1 23 503 525 503 525 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF341-202 - 854 2.6e-35 118.9 113.2 7 13 0.00019 0.28 11.7 0.8 1 23 540 564 540 564 0.94 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF341-202 - 854 2.6e-35 118.9 113.2 8 13 0.0019 2.8 8.6 4.1 1 20 566 585 566 588 0.91 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF341-202 - 854 2.6e-35 118.9 113.2 9 13 0.00027 0.41 11.2 6.0 1 23 594 616 594 616 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF341-202 - 854 2.6e-35 118.9 113.2 10 13 4.7e-07 0.00071 19.9 1.1 1 23 622 644 622 644 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF341-202 - 854 2.6e-35 118.9 113.2 11 13 1.5e-06 0.0023 18.3 1.4 1 23 650 677 650 677 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF341-202 - 854 2.6e-35 118.9 113.2 12 13 7.7e-07 0.0011 19.2 3.1 1 23 683 705 683 705 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF341-202 - 854 2.6e-35 118.9 113.2 13 13 0.0014 2.1 9.0 3.4 1 21 711 731 711 732 0.94 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZNF341-202 - 854 1.4e-29 100.1 103.4 1 13 0.0026 3.9 8.6 0.5 1 21 53 73 53 75 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF341-202 - 854 1.4e-29 100.1 103.4 2 13 1.5e-06 0.0023 18.6 1.4 2 23 323 344 322 345 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF341-202 - 854 1.4e-29 100.1 103.4 3 13 8e-06 0.012 16.4 0.5 1 23 350 372 350 373 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF341-202 - 854 1.4e-29 100.1 103.4 4 13 4.3e-05 0.064 14.1 3.0 1 23 445 467 445 468 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF341-202 - 854 1.4e-29 100.1 103.4 5 13 0.0048 7.1 7.8 0.5 1 23 473 497 473 498 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF341-202 - 854 1.4e-29 100.1 103.4 6 13 8.8e-06 0.013 16.3 1.0 1 23 503 525 503 526 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF341-202 - 854 1.4e-29 100.1 103.4 7 13 0.00086 1.3 10.1 0.3 1 22 540 561 540 562 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF341-202 - 854 1.4e-29 100.1 103.4 8 13 1.1e-06 0.0017 19.0 3.1 1 23 566 588 566 589 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF341-202 - 854 1.4e-29 100.1 103.4 9 13 0.049 73 4.6 5.1 1 23 594 616 594 617 0.78 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF341-202 - 854 1.4e-29 100.1 103.4 10 13 3.1e-06 0.0047 17.7 0.7 1 23 622 644 622 645 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF341-202 - 854 1.4e-29 100.1 103.4 11 13 0.00011 0.17 12.8 1.1 1 23 650 677 650 678 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF341-202 - 854 1.4e-29 100.1 103.4 12 13 0.00019 0.28 12.1 3.1 1 23 683 705 683 706 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF341-202 - 854 1.4e-29 100.1 103.4 13 13 0.016 24 6.1 0.9 1 19 711 729 711 730 0.93 C2H2-type zinc finger zf-H2C2_2 PF13465.6 26 ZNF341-202 - 854 1.1e-26 92.0 97.5 1 14 0.29 4.3e+02 1.6 0.4 15 26 53 64 49 64 0.83 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF341-202 - 854 1.1e-26 92.0 97.5 2 14 0.0028 4.1 8.0 2.3 14 26 321 333 316 333 0.80 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF341-202 - 854 1.1e-26 92.0 97.5 3 14 7.2e-12 1.1e-08 35.1 0.0 1 25 336 360 336 361 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF341-202 - 854 1.1e-26 92.0 97.5 4 14 0.59 8.9e+02 0.6 0.1 1 10 364 373 364 377 0.85 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF341-202 - 854 1.1e-26 92.0 97.5 5 14 0.041 61 4.3 0.1 15 26 445 456 437 456 0.89 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF341-202 - 854 1.1e-26 92.0 97.5 6 14 0.00098 1.5 9.4 0.7 2 24 460 484 459 486 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF341-202 - 854 1.1e-26 92.0 97.5 7 14 0.00013 0.2 12.1 1.0 5 24 493 512 490 514 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF341-202 - 854 1.1e-26 92.0 97.5 8 14 0.38 5.7e+02 1.2 0.8 9 23 531 548 520 551 0.63 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF341-202 - 854 1.1e-26 92.0 97.5 9 14 0.16 2.4e+02 2.4 3.3 15 24 566 575 554 577 0.71 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF341-202 - 854 1.1e-26 92.0 97.5 10 14 0.00043 0.64 10.6 2.0 2 25 581 604 580 605 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF341-202 - 854 1.1e-26 92.0 97.5 11 14 1e-07 0.00015 22.0 1.1 2 25 609 632 608 633 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF341-202 - 854 1.1e-26 92.0 97.5 12 14 0.00013 0.2 12.2 4.2 2 25 637 665 636 666 0.87 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF341-202 - 854 1.1e-26 92.0 97.5 13 14 5.4e-07 0.0008 19.7 1.1 2 25 670 693 669 694 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF341-202 - 854 1.1e-26 92.0 97.5 14 14 0.00024 0.36 11.3 0.8 1 25 697 721 697 722 0.92 Zinc-finger double domain zf-C2H2_jaz PF12171.8 27 ZNF341-202 - 854 2.8e-08 33.8 72.0 1 12 0.081 1.2e+02 3.1 0.5 7 22 58 73 55 75 0.88 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF341-202 - 854 2.8e-08 33.8 72.0 2 12 6.1e-05 0.091 13.1 1.9 2 22 322 342 321 342 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF341-202 - 854 2.8e-08 33.8 72.0 3 12 0.0026 3.9 7.9 0.7 2 25 350 373 349 373 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF341-202 - 854 2.8e-08 33.8 72.0 4 12 0.37 5.6e+02 1.0 2.1 4 25 447 468 444 468 0.90 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF341-202 - 854 2.8e-08 33.8 72.0 5 12 0.18 2.7e+02 2.0 0.2 7 25 480 498 478 498 0.79 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF341-202 - 854 2.8e-08 33.8 72.0 6 12 0.0033 4.9 7.6 0.3 2 24 503 525 502 526 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF341-202 - 854 2.8e-08 33.8 72.0 7 12 0.0012 1.8 9.0 0.2 2 22 566 586 565 589 0.88 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF341-202 - 854 2.8e-08 33.8 72.0 8 12 0.00093 1.4 9.3 2.9 2 20 594 612 593 612 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF341-202 - 854 2.8e-08 33.8 72.0 9 12 0.063 94 3.5 0.2 2 21 622 641 621 642 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF341-202 - 854 2.8e-08 33.8 72.0 10 12 0.002 3 8.2 0.1 7 27 660 684 660 684 0.85 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF341-202 - 854 2.8e-08 33.8 72.0 11 12 0.0026 3.9 7.9 0.5 2 22 683 703 682 703 0.91 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF341-202 - 854 2.8e-08 33.8 72.0 12 12 0.0067 9.9 6.6 0.3 1 20 710 729 710 730 0.92 Zinc-finger double-stranded RNA-binding # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF341-202.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF341-202.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF341-202.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF341-202.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF341-202.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:04:39 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-C2H2 PF00096.26 23 ZNF341-203 - 604 2.5e-17 62.3 45.8 1 6 0.0024 2.1 8.9 0.6 2 21 54 73 53 74 0.92 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF341-203 - 604 2.5e-17 62.3 45.8 2 6 1.1e-08 9.5e-06 25.8 2.2 2 23 323 344 322 344 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF341-203 - 604 2.5e-17 62.3 45.8 3 6 1.5e-06 0.0013 19.1 0.4 1 23 350 372 350 372 0.92 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF341-203 - 604 2.5e-17 62.3 45.8 4 6 0.00061 0.55 10.8 2.9 1 23 445 467 445 467 0.94 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF341-203 - 604 2.5e-17 62.3 45.8 5 6 0.0051 4.6 7.9 0.4 1 23 473 497 473 497 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF341-203 - 604 2.5e-17 62.3 45.8 6 6 1.2e-06 0.0011 19.3 1.3 1 23 503 525 503 525 0.97 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZNF341-203 - 604 9.2e-17 60.3 39.9 1 6 0.0029 2.6 9.1 0.5 1 21 53 73 53 75 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF341-203 - 604 9.2e-17 60.3 39.9 2 6 1.7e-06 0.0015 19.2 1.4 2 23 323 344 322 345 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF341-203 - 604 9.2e-17 60.3 39.9 3 6 8.9e-06 0.008 16.9 0.5 1 23 350 372 350 373 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF341-203 - 604 9.2e-17 60.3 39.9 4 6 4.8e-05 0.043 14.7 3.0 1 23 445 467 445 468 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF341-203 - 604 9.2e-17 60.3 39.9 5 6 0.0053 4.8 8.3 0.5 1 23 473 497 473 498 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF341-203 - 604 9.2e-17 60.3 39.9 6 6 9.7e-06 0.0087 16.8 1.0 1 23 503 525 503 526 0.95 C2H2-type zinc finger zf-H2C2_2 PF13465.6 26 ZNF341-203 - 604 7.7e-14 51.4 39.2 1 7 0.33 3e+02 2.1 0.4 15 26 53 64 49 64 0.83 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF341-203 - 604 7.7e-14 51.4 39.2 2 7 0.0031 2.8 8.5 2.3 14 26 321 333 316 333 0.80 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF341-203 - 604 7.7e-14 51.4 39.2 3 7 8.1e-12 7.2e-09 35.7 0.0 1 25 336 360 336 361 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF341-203 - 604 7.7e-14 51.4 39.2 4 7 0.68 6.1e+02 1.1 0.1 1 10 364 373 364 377 0.85 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF341-203 - 604 7.7e-14 51.4 39.2 5 7 0.047 42 4.8 0.2 15 26 445 456 436 456 0.88 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF341-203 - 604 7.7e-14 51.4 39.2 6 7 0.0011 0.97 10.0 0.7 2 24 460 484 459 486 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF341-203 - 604 7.7e-14 51.4 39.2 7 7 0.00015 0.14 12.7 1.0 5 24 493 512 490 514 0.93 Zinc-finger double domain zf-C2H2_6 PF13912.6 27 ZNF341-203 - 604 3e-08 33.5 37.2 1 6 8.4e-06 0.0075 16.2 0.4 1 22 52 73 52 74 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF341-203 - 604 3e-08 33.5 37.2 2 6 0.0013 1.2 9.2 0.6 3 13 323 333 323 346 0.78 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF341-203 - 604 3e-08 33.5 37.2 3 6 5.5 5e+03 -2.3 0.6 3 24 351 372 350 373 0.52 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF341-203 - 604 3e-08 33.5 37.2 4 6 0.018 16 5.6 2.8 2 25 445 468 444 470 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF341-203 - 604 3e-08 33.5 37.2 5 6 0.4 3.6e+02 1.3 0.2 5 26 478 499 472 500 0.81 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF341-203 - 604 3e-08 33.5 37.2 6 6 2.3e-08 2.1e-05 24.4 1.5 2 24 503 525 502 526 0.96 C2H2-type zinc finger # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF341-203.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF341-203.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF341-203.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF341-203.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF341-203.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:04:40 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-C2H2 PF00096.26 23 ZNF341-204 - 281 1.4e-15 56.7 30.9 1 4 9.3e-08 0.00018 21.7 1.1 1 23 49 71 49 71 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF341-204 - 281 1.4e-15 56.7 30.9 2 4 2.9e-07 0.00057 20.2 1.4 1 23 77 104 77 104 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF341-204 - 281 1.4e-15 56.7 30.9 3 4 1.5e-07 0.0003 21.1 3.1 1 23 110 132 110 132 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF341-204 - 281 1.4e-15 56.7 30.9 4 4 0.00027 0.55 10.8 3.4 1 21 138 158 138 159 0.94 Zinc finger, C2H2 type zf-H2C2_2 PF13465.6 26 ZNF341-204 - 281 2.7e-13 49.7 26.9 1 4 7.7e-06 0.015 15.7 0.4 11 25 45 59 44 60 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF341-204 - 281 2.7e-13 49.7 26.9 2 4 2.5e-05 0.05 14.0 4.3 2 25 64 92 63 93 0.87 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF341-204 - 281 2.7e-13 49.7 26.9 3 4 1e-07 0.00021 21.6 1.1 2 25 97 120 96 121 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF341-204 - 281 2.7e-13 49.7 26.9 4 4 3.3e-05 0.066 13.7 0.3 1 25 124 148 124 149 0.92 Zinc-finger double domain zf-C2H2_4 PF13894.6 24 ZNF341-204 - 281 1.6e-10 40.9 26.0 1 4 6e-07 0.0012 19.5 0.7 1 23 49 71 49 72 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF341-204 - 281 1.6e-10 40.9 26.0 2 4 2.1e-05 0.042 14.7 1.1 1 23 77 104 77 105 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF341-204 - 281 1.6e-10 40.9 26.0 3 4 3.6e-05 0.071 14.0 3.1 1 23 110 132 110 133 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF341-204 - 281 1.6e-10 40.9 26.0 4 4 0.0032 6.4 7.9 0.9 1 19 138 156 138 157 0.93 C2H2-type zinc finger # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF341-204.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF341-204.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF341-204.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF341-204.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF341-204.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:04:40 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-C2H2 PF00096.26 23 ZNF341-205 - 764 7e-35 117.5 106.3 1 12 8.3e-09 1.2e-05 25.4 2.2 2 23 233 254 232 254 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF341-205 - 764 7e-35 117.5 106.3 2 12 1.2e-06 0.0017 18.7 0.4 1 23 260 282 260 282 0.92 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF341-205 - 764 7e-35 117.5 106.3 3 12 0.00048 0.72 10.4 2.9 1 23 355 377 355 377 0.94 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF341-205 - 764 7e-35 117.5 106.3 4 12 0.0041 6.1 7.5 0.4 1 23 383 407 383 407 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF341-205 - 764 7e-35 117.5 106.3 5 12 9.6e-07 0.0014 18.9 1.3 1 23 413 435 413 435 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF341-205 - 764 7e-35 117.5 106.3 6 12 0.00016 0.24 11.9 0.8 1 23 450 474 450 474 0.94 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF341-205 - 764 7e-35 117.5 106.3 7 12 0.0017 2.5 8.7 4.1 1 20 476 495 476 498 0.91 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF341-205 - 764 7e-35 117.5 106.3 8 12 0.00024 0.36 11.4 6.0 1 23 504 526 504 526 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF341-205 - 764 7e-35 117.5 106.3 9 12 4.2e-07 0.00062 20.1 1.1 1 23 532 554 532 554 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF341-205 - 764 7e-35 117.5 106.3 10 12 1.3e-06 0.002 18.5 1.4 1 23 560 587 560 587 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF341-205 - 764 7e-35 117.5 106.3 11 12 6.8e-07 0.001 19.4 3.1 1 23 593 615 593 615 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF341-205 - 764 7e-35 117.5 106.3 12 12 0.0012 1.8 9.2 3.4 1 21 621 641 621 642 0.94 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZNF341-205 - 764 4.8e-29 98.5 96.8 1 12 1.4e-06 0.002 18.8 1.4 2 23 233 254 232 255 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF341-205 - 764 4.8e-29 98.5 96.8 2 12 7e-06 0.011 16.6 0.5 1 23 260 282 260 283 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF341-205 - 764 4.8e-29 98.5 96.8 3 12 3.8e-05 0.056 14.3 3.0 1 23 355 377 355 378 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF341-205 - 764 4.8e-29 98.5 96.8 4 12 0.0042 6.3 7.9 0.5 1 23 383 407 383 408 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF341-205 - 764 4.8e-29 98.5 96.8 5 12 7.7e-06 0.012 16.4 1.0 1 23 413 435 413 436 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF341-205 - 764 4.8e-29 98.5 96.8 6 12 0.00075 1.1 10.2 0.3 1 22 450 471 450 472 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF341-205 - 764 4.8e-29 98.5 96.8 7 12 1e-06 0.0015 19.2 3.1 1 23 476 498 476 499 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF341-205 - 764 4.8e-29 98.5 96.8 8 12 0.043 65 4.8 5.1 1 23 504 526 504 527 0.78 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF341-205 - 764 4.8e-29 98.5 96.8 9 12 2.7e-06 0.0041 17.8 0.7 1 23 532 554 532 555 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF341-205 - 764 4.8e-29 98.5 96.8 10 12 0.0001 0.15 13.0 1.1 1 23 560 587 560 588 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF341-205 - 764 4.8e-29 98.5 96.8 11 12 0.00016 0.24 12.3 3.1 1 23 593 615 593 616 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF341-205 - 764 4.8e-29 98.5 96.8 12 12 0.014 21 6.3 0.9 1 19 621 639 621 640 0.93 C2H2-type zinc finger zf-H2C2_2 PF13465.6 26 ZNF341-205 - 764 3.7e-28 96.6 91.3 1 13 0.0024 3.7 8.2 2.3 14 26 231 243 226 243 0.80 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF341-205 - 764 3.7e-28 96.6 91.3 2 13 6.4e-12 9.5e-09 35.3 0.0 1 25 246 270 246 271 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF341-205 - 764 3.7e-28 96.6 91.3 3 13 0.53 7.8e+02 0.8 0.1 1 10 274 283 274 287 0.85 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF341-205 - 764 3.7e-28 96.6 91.3 4 13 0.036 54 4.5 0.1 15 26 355 366 347 366 0.89 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF341-205 - 764 3.7e-28 96.6 91.3 5 13 0.00086 1.3 9.6 0.7 2 24 370 394 369 396 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF341-205 - 764 3.7e-28 96.6 91.3 6 13 0.00012 0.18 12.3 1.0 5 24 403 422 400 424 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF341-205 - 764 3.7e-28 96.6 91.3 7 13 0.34 5e+02 1.4 0.8 9 23 441 458 430 461 0.63 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF341-205 - 764 3.7e-28 96.6 91.3 8 13 0.14 2.1e+02 2.6 3.3 15 24 476 485 464 487 0.71 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF341-205 - 764 3.7e-28 96.6 91.3 9 13 0.00038 0.56 10.7 2.0 2 25 491 514 490 515 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF341-205 - 764 3.7e-28 96.6 91.3 10 13 9e-08 0.00013 22.2 1.1 2 25 519 542 518 543 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF341-205 - 764 3.7e-28 96.6 91.3 11 13 0.00012 0.17 12.3 4.2 2 25 547 575 546 576 0.87 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF341-205 - 764 3.7e-28 96.6 91.3 12 13 4.7e-07 0.0007 19.9 1.1 2 25 580 603 579 604 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF341-205 - 764 3.7e-28 96.6 91.3 13 13 0.00021 0.32 11.5 0.8 1 25 607 631 607 632 0.92 Zinc-finger double domain zf-C2H2_jaz PF12171.8 27 ZNF341-205 - 764 2.1e-09 37.4 65.1 1 11 5.4e-05 0.08 13.3 1.9 2 22 232 252 231 252 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF341-205 - 764 2.1e-09 37.4 65.1 2 11 0.0023 3.5 8.0 0.7 2 25 260 283 259 283 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF341-205 - 764 2.1e-09 37.4 65.1 3 11 0.33 4.9e+02 1.2 2.1 4 25 357 378 354 378 0.90 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF341-205 - 764 2.1e-09 37.4 65.1 4 11 0.16 2.4e+02 2.2 0.2 7 25 390 408 388 408 0.79 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF341-205 - 764 2.1e-09 37.4 65.1 5 11 0.0029 4.3 7.7 0.3 2 24 413 435 412 436 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF341-205 - 764 2.1e-09 37.4 65.1 6 11 0.001 1.6 9.1 0.1 2 22 476 496 475 499 0.88 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF341-205 - 764 2.1e-09 37.4 65.1 7 11 0.00082 1.2 9.5 2.9 2 20 504 522 503 522 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF341-205 - 764 2.1e-09 37.4 65.1 8 11 0.055 83 3.6 0.2 2 21 532 551 531 552 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF341-205 - 764 2.1e-09 37.4 65.1 9 11 0.0018 2.7 8.4 0.1 7 27 570 594 570 594 0.85 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF341-205 - 764 2.1e-09 37.4 65.1 10 11 0.0023 3.4 8.1 0.4 2 22 593 613 592 613 0.91 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF341-205 - 764 2.1e-09 37.4 65.1 11 11 0.0059 8.8 6.8 0.3 1 20 620 639 620 640 0.92 Zinc-finger double-stranded RNA-binding # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF341-205.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF341-205.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF341-205.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF341-205.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF341-205.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:04:40 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZNF34-201 - 560 2.3e-89 290.1 93.7 1 13 0.01 9.9 6.8 0.1 12 25 192 205 189 206 0.88 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF34-201 - 560 2.3e-89 290.1 93.7 2 13 0.081 77 4.0 0.8 2 13 210 221 209 224 0.90 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF34-201 - 560 2.3e-89 290.1 93.7 3 13 0.00012 0.12 12.9 1.2 10 25 246 261 244 262 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF34-201 - 560 2.3e-89 290.1 93.7 4 13 8e-12 7.6e-09 35.6 0.7 1 25 265 289 265 290 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF34-201 - 560 2.3e-89 290.1 93.7 5 13 3.1e-08 2.9e-05 24.3 0.4 4 26 296 318 293 318 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF34-201 - 560 2.3e-89 290.1 93.7 6 13 2.7e-11 2.5e-08 34.0 1.3 1 25 321 345 321 346 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF34-201 - 560 2.3e-89 290.1 93.7 7 13 1.9e-11 1.8e-08 34.4 0.2 2 25 350 373 349 374 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF34-201 - 560 2.3e-89 290.1 93.7 8 13 9.6e-12 9e-09 35.4 1.1 2 25 378 401 378 402 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF34-201 - 560 2.3e-89 290.1 93.7 9 13 4.2e-11 4e-08 33.3 0.2 1 24 405 428 405 430 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF34-201 - 560 2.3e-89 290.1 93.7 10 13 2.7e-11 2.5e-08 34.0 0.3 2 25 434 457 433 458 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF34-201 - 560 2.3e-89 290.1 93.7 11 13 2.3e-11 2.2e-08 34.2 2.2 1 26 461 486 461 486 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF34-201 - 560 2.3e-89 290.1 93.7 12 13 1.2e-09 1.1e-06 28.8 2.8 4 25 492 513 489 514 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF34-201 - 560 2.3e-89 290.1 93.7 13 13 2.6e-11 2.5e-08 34.0 1.8 2 26 518 542 517 542 0.93 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZNF34-201 - 560 4.1e-67 219.1 105.3 1 12 2e-06 0.0019 18.5 2.4 1 23 195 217 195 217 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF34-201 - 560 4.1e-67 219.1 105.3 2 12 2e-08 1.8e-05 24.9 3.5 1 23 251 273 251 273 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF34-201 - 560 4.1e-67 219.1 105.3 3 12 2.9e-07 0.00028 21.2 2.5 1 23 279 301 279 301 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF34-201 - 560 4.1e-67 219.1 105.3 4 12 6.8e-10 6.5e-07 29.5 1.3 1 23 307 329 307 329 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF34-201 - 560 4.1e-67 219.1 105.3 5 12 8.6e-08 8.1e-05 22.9 1.5 1 23 335 357 335 357 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF34-201 - 560 4.1e-67 219.1 105.3 6 12 1.8e-07 0.00017 21.9 0.4 1 23 363 385 363 385 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF34-201 - 560 4.1e-67 219.1 105.3 7 12 2e-09 1.9e-06 28.0 0.3 1 23 391 413 391 413 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF34-201 - 560 4.1e-67 219.1 105.3 8 12 2.1e-07 0.0002 21.6 0.7 1 23 419 441 419 441 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF34-201 - 560 4.1e-67 219.1 105.3 9 12 1.1e-09 1.1e-06 28.8 1.1 1 23 447 469 447 469 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF34-201 - 560 4.1e-67 219.1 105.3 10 12 2.3e-06 0.0021 18.4 6.2 1 23 475 497 475 498 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF34-201 - 560 4.1e-67 219.1 105.3 11 12 9.8e-08 9.2e-05 22.7 1.8 1 23 503 525 503 525 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF34-201 - 560 4.1e-67 219.1 105.3 12 12 1.1e-07 0.0001 22.6 5.2 1 23 531 553 531 553 0.99 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZNF34-201 - 560 1.8e-37 124.7 97.3 1 12 5.7e-05 0.054 14.4 2.0 1 23 195 217 195 218 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF34-201 - 560 1.8e-37 124.7 97.3 2 12 2e-05 0.019 15.8 2.5 1 23 251 273 251 274 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF34-201 - 560 1.8e-37 124.7 97.3 3 12 7.4e-06 0.007 17.1 2.2 1 23 279 301 279 302 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF34-201 - 560 1.8e-37 124.7 97.3 4 12 6.3e-06 0.006 17.3 0.6 1 23 307 329 307 330 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF34-201 - 560 1.8e-37 124.7 97.3 5 12 6.5e-05 0.061 14.2 1.2 1 23 335 357 335 358 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF34-201 - 560 1.8e-37 124.7 97.3 6 12 1.2e-05 0.012 16.4 0.2 1 23 363 385 363 386 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF34-201 - 560 1.8e-37 124.7 97.3 7 12 9.2e-06 0.0087 16.8 0.3 1 23 391 413 391 414 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF34-201 - 560 1.8e-37 124.7 97.3 8 12 0.00019 0.18 12.8 0.8 1 23 419 441 419 442 0.97 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF34-201 - 560 1.8e-37 124.7 97.3 9 12 6.8e-06 0.0064 17.2 0.8 1 23 447 469 447 470 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF34-201 - 560 1.8e-37 124.7 97.3 10 12 7.1e-06 0.0067 17.2 6.0 1 24 475 498 475 498 0.99 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF34-201 - 560 1.8e-37 124.7 97.3 11 12 0.0001 0.097 13.6 1.1 1 23 503 525 503 526 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF34-201 - 560 1.8e-37 124.7 97.3 12 12 0.00067 0.63 11.0 4.1 1 23 531 553 531 554 0.94 C2H2-type zinc finger KRAB PF01352.27 42 ZNF34-201 - 560 2e-23 81.8 0.0 1 1 3.7e-26 3.5e-23 81.0 0.0 2 42 35 75 34 75 0.99 KRAB box zf-C2H2_6 PF13912.6 27 ZNF34-201 - 560 3.9e-18 65.0 91.5 1 12 0.00065 0.62 10.1 2.9 2 26 195 219 195 220 0.95 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF34-201 - 560 3.9e-18 65.0 91.5 2 12 0.00013 0.12 12.4 2.4 2 24 251 273 250 276 0.87 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF34-201 - 560 3.9e-18 65.0 91.5 3 12 0.0012 1.1 9.3 1.6 2 12 279 289 279 302 0.90 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF34-201 - 560 3.9e-18 65.0 91.5 4 12 3.1e-06 0.0029 17.6 0.2 2 24 307 329 307 332 0.91 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF34-201 - 560 3.9e-18 65.0 91.5 5 12 0.002 1.8 8.6 2.1 2 24 335 357 335 360 0.90 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF34-201 - 560 3.9e-18 65.0 91.5 6 12 0.00036 0.34 11.0 0.1 2 24 363 385 363 388 0.95 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF34-201 - 560 3.9e-18 65.0 91.5 7 12 0.0003 0.29 11.2 0.6 2 22 391 411 391 415 0.85 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF34-201 - 560 3.9e-18 65.0 91.5 8 12 0.005 4.7 7.3 1.0 2 24 419 441 419 444 0.84 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF34-201 - 560 3.9e-18 65.0 91.5 9 12 0.0026 2.5 8.2 0.7 2 21 447 466 447 471 0.81 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF34-201 - 560 3.9e-18 65.0 91.5 10 12 0.0041 3.9 7.6 4.0 2 25 475 498 475 500 0.75 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF34-201 - 560 3.9e-18 65.0 91.5 11 12 0.0038 3.5 7.7 0.7 2 24 503 525 503 528 0.89 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF34-201 - 560 3.9e-18 65.0 91.5 12 12 0.0015 1.5 8.9 1.6 2 12 531 541 531 555 0.89 C2H2-type zinc finger Zn-ribbon_8 PF09723.10 40 ZNF34-201 - 560 5.4e-13 48.8 57.5 1 10 0.64 6e+02 0.7 0.3 7 18 196 207 195 217 0.84 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF34-201 - 560 5.4e-13 48.8 57.5 2 10 0.00079 0.74 10.0 1.8 8 35 253 287 249 292 0.83 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF34-201 - 560 5.4e-13 48.8 57.5 3 10 0.0051 4.8 7.4 0.6 6 17 279 290 278 299 0.84 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF34-201 - 560 5.4e-13 48.8 57.5 4 10 5.2e-06 0.0049 17.0 3.6 6 34 307 342 306 346 0.93 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF34-201 - 560 5.4e-13 48.8 57.5 5 10 0.00014 0.13 12.4 3.9 6 34 335 370 334 374 0.89 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF34-201 - 560 5.4e-13 48.8 57.5 6 10 0.00031 0.3 11.3 4.1 6 34 363 398 362 398 0.82 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF34-201 - 560 5.4e-13 48.8 57.5 7 10 0.00033 0.31 11.2 4.3 6 34 391 426 390 432 0.90 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF34-201 - 560 5.4e-13 48.8 57.5 8 10 2.7e-06 0.0025 17.9 2.5 6 35 447 483 446 491 0.90 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF34-201 - 560 5.4e-13 48.8 57.5 9 10 0.0001 0.094 12.8 2.9 6 36 503 540 502 542 0.87 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF34-201 - 560 5.4e-13 48.8 57.5 10 10 0.0067 6.4 7.0 0.7 6 19 531 544 529 551 0.82 Zinc ribbon domain XPA_N PF01286.18 32 ZNF34-201 - 560 2.8e-11 43.3 53.3 1 12 0.037 35 4.5 0.3 3 17 196 211 194 214 0.74 XPA protein N-terminal XPA_N PF01286.18 32 ZNF34-201 - 560 2.8e-11 43.3 53.3 2 12 0.58 5.5e+02 0.7 0.0 4 14 253 263 251 264 0.84 XPA protein N-terminal XPA_N PF01286.18 32 ZNF34-201 - 560 2.8e-11 43.3 53.3 3 12 0.0017 1.6 8.8 2.1 3 14 280 291 278 292 0.92 XPA protein N-terminal XPA_N PF01286.18 32 ZNF34-201 - 560 2.8e-11 43.3 53.3 4 12 0.0041 3.9 7.6 0.1 3 12 308 317 306 318 0.88 XPA protein N-terminal XPA_N PF01286.18 32 ZNF34-201 - 560 2.8e-11 43.3 53.3 5 12 0.063 60 3.8 0.1 3 11 336 344 334 347 0.88 XPA protein N-terminal XPA_N PF01286.18 32 ZNF34-201 - 560 2.8e-11 43.3 53.3 6 12 0.0083 7.8 6.6 0.0 3 13 364 374 362 381 0.87 XPA protein N-terminal XPA_N PF01286.18 32 ZNF34-201 - 560 2.8e-11 43.3 53.3 7 12 0.0024 2.2 8.4 0.4 3 14 392 403 390 406 0.93 XPA protein N-terminal XPA_N PF01286.18 32 ZNF34-201 - 560 2.8e-11 43.3 53.3 8 12 0.026 25 5.0 0.2 3 12 420 429 418 436 0.89 XPA protein N-terminal XPA_N PF01286.18 32 ZNF34-201 - 560 2.8e-11 43.3 53.3 9 12 0.029 27 4.9 0.1 3 14 448 459 446 462 0.90 XPA protein N-terminal XPA_N PF01286.18 32 ZNF34-201 - 560 2.8e-11 43.3 53.3 10 12 0.0011 1 9.4 0.2 3 14 476 487 474 490 0.92 XPA protein N-terminal XPA_N PF01286.18 32 ZNF34-201 - 560 2.8e-11 43.3 53.3 11 12 0.005 4.8 7.3 0.2 3 17 504 518 502 521 0.87 XPA protein N-terminal XPA_N PF01286.18 32 ZNF34-201 - 560 2.8e-11 43.3 53.3 12 12 0.006 5.7 7.1 0.2 3 14 532 543 530 544 0.89 XPA protein N-terminal zinc_ribbon_15 PF17032.5 86 ZNF34-201 - 560 6.6e-08 33.2 51.0 1 8 1.9 1.8e+03 -0.3 0.2 39 54 196 211 182 235 0.70 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF34-201 - 560 6.6e-08 33.2 51.0 2 8 0.00014 0.13 13.0 3.5 30 81 243 294 240 297 0.91 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF34-201 - 560 6.6e-08 33.2 51.0 3 8 0.002 1.9 9.3 1.5 25 76 294 345 291 350 0.88 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF34-201 - 560 6.6e-08 33.2 51.0 4 8 0.00076 0.72 10.6 0.5 30 78 355 403 347 407 0.85 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF34-201 - 560 6.6e-08 33.2 51.0 5 8 0.00029 0.27 12.0 3.1 29 78 410 459 405 462 0.87 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF34-201 - 560 6.6e-08 33.2 51.0 6 8 0.0002 0.19 12.5 1.7 36 79 445 488 439 493 0.87 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF34-201 - 560 6.6e-08 33.2 51.0 7 8 0.00033 0.31 11.8 2.2 26 78 463 515 459 518 0.86 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF34-201 - 560 6.6e-08 33.2 51.0 8 8 0.00016 0.15 12.8 4.6 32 83 497 548 489 550 0.87 zinc-ribbon family zf_UBZ PF18439.1 32 ZNF34-201 - 560 7.9e-08 31.8 57.4 1 12 0.38 3.6e+02 0.9 0.2 4 14 196 206 194 213 0.84 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF34-201 - 560 7.9e-08 31.8 57.4 2 12 0.6 5.7e+02 0.2 0.0 4 12 252 260 250 269 0.87 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF34-201 - 560 7.9e-08 31.8 57.4 3 12 0.00096 0.91 9.2 0.9 3 20 279 297 277 298 0.86 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF34-201 - 560 7.9e-08 31.8 57.4 4 12 0.0047 4.4 7.0 0.1 3 13 307 317 306 326 0.78 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF34-201 - 560 7.9e-08 31.8 57.4 5 12 0.0044 4.1 7.1 0.1 3 14 335 346 333 354 0.85 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF34-201 - 560 7.9e-08 31.8 57.4 6 12 0.025 24 4.6 0.1 3 14 363 374 361 378 0.86 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF34-201 - 560 7.9e-08 31.8 57.4 7 12 0.014 13 5.4 0.2 3 21 391 410 389 410 0.83 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF34-201 - 560 7.9e-08 31.8 57.4 8 12 0.018 17 5.1 0.4 3 21 419 438 417 438 0.88 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF34-201 - 560 7.9e-08 31.8 57.4 9 12 0.0051 4.8 6.9 0.3 3 20 447 465 445 466 0.84 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF34-201 - 560 7.9e-08 31.8 57.4 10 12 0.0029 2.7 7.6 0.3 3 18 475 490 473 493 0.81 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF34-201 - 560 7.9e-08 31.8 57.4 11 12 0.0068 6.4 6.5 0.1 3 15 503 515 501 522 0.82 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF34-201 - 560 7.9e-08 31.8 57.4 12 12 0.0078 7.4 6.3 1.6 3 20 531 549 529 550 0.79 Ubiquitin-Binding Zinc Finger DZR PF12773.7 49 ZNF34-201 - 560 1.5e-07 31.3 50.8 1 4 1.1 1e+03 -0.2 0.0 28 38 194 204 174 209 0.71 Double zinc ribbon DZR PF12773.7 49 ZNF34-201 - 560 1.5e-07 31.3 50.8 2 4 1.5e-05 0.014 15.4 8.2 11 49 247 313 241 313 0.87 Double zinc ribbon DZR PF12773.7 49 ZNF34-201 - 560 1.5e-07 31.3 50.8 3 4 0.15 1.5e+02 2.5 0.1 28 37 306 315 297 322 0.68 Double zinc ribbon DZR PF12773.7 49 ZNF34-201 - 560 1.5e-07 31.3 50.8 4 4 0.00022 0.21 11.6 0.7 13 39 335 373 325 377 0.87 Double zinc ribbon # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF34-201.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF34-201.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF34-201.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF34-201.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF34-201.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:04:41 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZNF34-202 - 539 1.3e-89 290.9 93.7 1 13 0.01 9.5 6.9 0.1 12 25 171 184 168 185 0.88 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF34-202 - 539 1.3e-89 290.9 93.7 2 13 0.078 73 4.0 0.8 2 13 189 200 188 203 0.90 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF34-202 - 539 1.3e-89 290.9 93.7 3 13 0.00012 0.11 13.0 1.2 10 25 225 240 223 241 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF34-202 - 539 1.3e-89 290.9 93.7 4 13 7.6e-12 7.2e-09 35.7 0.7 1 25 244 268 244 269 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF34-202 - 539 1.3e-89 290.9 93.7 5 13 2.9e-08 2.8e-05 24.3 0.4 4 26 275 297 272 297 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF34-202 - 539 1.3e-89 290.9 93.7 6 13 2.6e-11 2.4e-08 34.0 1.3 1 25 300 324 300 325 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF34-202 - 539 1.3e-89 290.9 93.7 7 13 1.8e-11 1.7e-08 34.5 0.2 2 25 329 352 328 353 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF34-202 - 539 1.3e-89 290.9 93.7 8 13 9.1e-12 8.6e-09 35.4 1.1 2 25 357 380 357 381 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF34-202 - 539 1.3e-89 290.9 93.7 9 13 4e-11 3.8e-08 33.4 0.2 1 24 384 407 384 409 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF34-202 - 539 1.3e-89 290.9 93.7 10 13 2.6e-11 2.4e-08 34.0 0.3 2 25 413 436 412 437 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF34-202 - 539 1.3e-89 290.9 93.7 11 13 2.2e-11 2.1e-08 34.2 2.2 1 26 440 465 440 465 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF34-202 - 539 1.3e-89 290.9 93.7 12 13 1.1e-09 1.1e-06 28.8 2.8 4 25 471 492 468 493 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF34-202 - 539 1.3e-89 290.9 93.7 13 13 2.5e-11 2.4e-08 34.0 1.8 2 26 497 521 496 521 0.93 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZNF34-202 - 539 2.4e-67 219.8 105.3 1 12 1.9e-06 0.0018 18.6 2.4 1 23 174 196 174 196 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF34-202 - 539 2.4e-67 219.8 105.3 2 12 1.9e-08 1.8e-05 25.0 3.5 1 23 230 252 230 252 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF34-202 - 539 2.4e-67 219.8 105.3 3 12 2.8e-07 0.00027 21.2 2.5 1 23 258 280 258 280 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF34-202 - 539 2.4e-67 219.8 105.3 4 12 6.5e-10 6.2e-07 29.5 1.3 1 23 286 308 286 308 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF34-202 - 539 2.4e-67 219.8 105.3 5 12 8.2e-08 7.7e-05 22.9 1.5 1 23 314 336 314 336 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF34-202 - 539 2.4e-67 219.8 105.3 6 12 1.7e-07 0.00016 21.9 0.4 1 23 342 364 342 364 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF34-202 - 539 2.4e-67 219.8 105.3 7 12 1.9e-09 1.8e-06 28.1 0.3 1 23 370 392 370 392 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF34-202 - 539 2.4e-67 219.8 105.3 8 12 2e-07 0.00019 21.7 0.7 1 23 398 420 398 420 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF34-202 - 539 2.4e-67 219.8 105.3 9 12 1.1e-09 1e-06 28.9 1.1 1 23 426 448 426 448 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF34-202 - 539 2.4e-67 219.8 105.3 10 12 2.2e-06 0.0021 18.4 6.2 1 23 454 476 454 477 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF34-202 - 539 2.4e-67 219.8 105.3 11 12 9.3e-08 8.8e-05 22.8 1.8 1 23 482 504 482 504 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF34-202 - 539 2.4e-67 219.8 105.3 12 12 1e-07 9.6e-05 22.6 5.2 1 23 510 532 510 532 0.99 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZNF34-202 - 539 1.1e-37 125.5 97.3 1 12 5.4e-05 0.051 14.4 2.0 1 23 174 196 174 197 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF34-202 - 539 1.1e-37 125.5 97.3 2 12 1.9e-05 0.018 15.8 2.5 1 23 230 252 230 253 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF34-202 - 539 1.1e-37 125.5 97.3 3 12 7.1e-06 0.0067 17.2 2.2 1 23 258 280 258 281 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF34-202 - 539 1.1e-37 125.5 97.3 4 12 6e-06 0.0057 17.4 0.6 1 23 286 308 286 309 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF34-202 - 539 1.1e-37 125.5 97.3 5 12 6.2e-05 0.059 14.2 1.2 1 23 314 336 314 337 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF34-202 - 539 1.1e-37 125.5 97.3 6 12 1.2e-05 0.011 16.5 0.2 1 23 342 364 342 365 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF34-202 - 539 1.1e-37 125.5 97.3 7 12 8.8e-06 0.0083 16.9 0.3 1 23 370 392 370 393 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF34-202 - 539 1.1e-37 125.5 97.3 8 12 0.00018 0.17 12.8 0.8 1 23 398 420 398 421 0.97 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF34-202 - 539 1.1e-37 125.5 97.3 9 12 6.5e-06 0.0061 17.3 0.8 1 23 426 448 426 449 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF34-202 - 539 1.1e-37 125.5 97.3 10 12 6.8e-06 0.0064 17.2 6.0 1 24 454 477 454 477 0.99 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF34-202 - 539 1.1e-37 125.5 97.3 11 12 9.8e-05 0.093 13.6 1.1 1 23 482 504 482 505 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF34-202 - 539 1.1e-37 125.5 97.3 12 12 0.00064 0.6 11.1 4.1 1 23 510 532 510 533 0.94 C2H2-type zinc finger KRAB PF01352.27 42 ZNF34-202 - 539 1.9e-23 81.8 0.0 1 1 3.5e-26 3.3e-23 81.0 0.0 2 42 14 54 13 54 0.99 KRAB box zf-C2H2_6 PF13912.6 27 ZNF34-202 - 539 2.3e-18 65.7 91.5 1 12 0.00063 0.59 10.2 2.9 2 26 174 198 174 199 0.95 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF34-202 - 539 2.3e-18 65.7 91.5 2 12 0.00012 0.11 12.5 2.4 2 24 230 252 229 255 0.87 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF34-202 - 539 2.3e-18 65.7 91.5 3 12 0.0012 1.1 9.3 1.6 2 12 258 268 258 281 0.90 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF34-202 - 539 2.3e-18 65.7 91.5 4 12 3e-06 0.0028 17.6 0.2 2 24 286 308 286 311 0.91 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF34-202 - 539 2.3e-18 65.7 91.5 5 12 0.0019 1.8 8.7 2.1 2 24 314 336 314 339 0.90 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF34-202 - 539 2.3e-18 65.7 91.5 6 12 0.00034 0.32 11.0 0.1 2 24 342 364 342 367 0.95 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF34-202 - 539 2.3e-18 65.7 91.5 7 12 0.00029 0.27 11.3 0.6 2 22 370 390 370 394 0.85 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF34-202 - 539 2.3e-18 65.7 91.5 8 12 0.0048 4.5 7.4 1.0 2 24 398 420 398 423 0.84 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF34-202 - 539 2.3e-18 65.7 91.5 9 12 0.0025 2.4 8.3 0.7 2 21 426 445 426 450 0.81 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF34-202 - 539 2.3e-18 65.7 91.5 10 12 0.004 3.7 7.6 4.0 2 25 454 477 454 479 0.75 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF34-202 - 539 2.3e-18 65.7 91.5 11 12 0.0036 3.4 7.8 0.7 2 24 482 504 482 507 0.89 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF34-202 - 539 2.3e-18 65.7 91.5 12 12 0.0015 1.4 9.0 1.6 2 12 510 520 510 534 0.89 C2H2-type zinc finger Zn-ribbon_8 PF09723.10 40 ZNF34-202 - 539 3.8e-13 49.3 57.5 1 10 0.61 5.8e+02 0.7 0.3 7 18 175 186 174 196 0.84 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF34-202 - 539 3.8e-13 49.3 57.5 2 10 0.00073 0.69 10.1 1.7 8 35 232 266 229 271 0.83 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF34-202 - 539 3.8e-13 49.3 57.5 3 10 0.0051 4.8 7.4 0.7 6 17 258 269 257 278 0.84 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF34-202 - 539 3.8e-13 49.3 57.5 4 10 4.5e-06 0.0042 17.2 3.4 6 34 286 321 285 325 0.93 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF34-202 - 539 3.8e-13 49.3 57.5 5 10 0.00014 0.13 12.4 4.0 6 34 314 349 313 353 0.89 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF34-202 - 539 3.8e-13 49.3 57.5 6 10 0.00037 0.35 11.0 4.4 6 34 342 377 341 377 0.82 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF34-202 - 539 3.8e-13 49.3 57.5 7 10 0.00026 0.24 11.5 4.0 6 34 370 405 369 411 0.90 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF34-202 - 539 3.8e-13 49.3 57.5 8 10 2.6e-06 0.0025 17.9 2.5 6 35 426 462 425 470 0.90 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF34-202 - 539 3.8e-13 49.3 57.5 9 10 0.00012 0.11 12.6 3.2 6 36 482 519 481 521 0.87 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF34-202 - 539 3.8e-13 49.3 57.5 10 10 0.0065 6.2 7.0 0.7 6 19 510 523 509 530 0.82 Zinc ribbon domain XPA_N PF01286.18 32 ZNF34-202 - 539 1.7e-11 43.9 53.3 1 12 0.036 34 4.6 0.3 3 17 175 190 173 193 0.74 XPA protein N-terminal XPA_N PF01286.18 32 ZNF34-202 - 539 1.7e-11 43.9 53.3 2 12 0.56 5.2e+02 0.8 0.0 4 14 232 242 230 243 0.84 XPA protein N-terminal XPA_N PF01286.18 32 ZNF34-202 - 539 1.7e-11 43.9 53.3 3 12 0.0016 1.5 8.9 2.1 3 14 259 270 257 271 0.92 XPA protein N-terminal XPA_N PF01286.18 32 ZNF34-202 - 539 1.7e-11 43.9 53.3 4 12 0.0039 3.7 7.7 0.1 3 12 287 296 285 297 0.88 XPA protein N-terminal XPA_N PF01286.18 32 ZNF34-202 - 539 1.7e-11 43.9 53.3 5 12 0.061 57 3.9 0.1 3 11 315 323 313 326 0.88 XPA protein N-terminal XPA_N PF01286.18 32 ZNF34-202 - 539 1.7e-11 43.9 53.3 6 12 0.008 7.5 6.7 0.0 3 13 343 353 341 360 0.87 XPA protein N-terminal XPA_N PF01286.18 32 ZNF34-202 - 539 1.7e-11 43.9 53.3 7 12 0.0023 2.1 8.4 0.4 3 14 371 382 369 385 0.93 XPA protein N-terminal XPA_N PF01286.18 32 ZNF34-202 - 539 1.7e-11 43.9 53.3 8 12 0.025 24 5.1 0.2 3 12 399 408 397 415 0.89 XPA protein N-terminal XPA_N PF01286.18 32 ZNF34-202 - 539 1.7e-11 43.9 53.3 9 12 0.028 26 5.0 0.1 3 14 427 438 425 441 0.90 XPA protein N-terminal XPA_N PF01286.18 32 ZNF34-202 - 539 1.7e-11 43.9 53.3 10 12 0.0011 1 9.5 0.2 3 14 455 466 453 469 0.92 XPA protein N-terminal XPA_N PF01286.18 32 ZNF34-202 - 539 1.7e-11 43.9 53.3 11 12 0.0048 4.6 7.4 0.2 3 17 483 497 481 500 0.87 XPA protein N-terminal XPA_N PF01286.18 32 ZNF34-202 - 539 1.7e-11 43.9 53.3 12 12 0.0058 5.4 7.1 0.2 3 14 511 522 509 523 0.89 XPA protein N-terminal zinc_ribbon_15 PF17032.5 86 ZNF34-202 - 539 5.7e-08 33.4 51.3 1 10 3.1 2.9e+03 -0.9 0.1 65 77 173 185 122 192 0.66 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF34-202 - 539 5.7e-08 33.4 51.3 2 10 1.8 1.7e+03 -0.1 0.2 39 55 175 191 163 223 0.72 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF34-202 - 539 5.7e-08 33.4 51.3 3 10 0.00013 0.12 13.1 3.4 30 81 222 273 220 276 0.91 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF34-202 - 539 5.7e-08 33.4 51.3 4 10 0.0019 1.8 9.3 1.6 25 76 273 324 270 329 0.88 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF34-202 - 539 5.7e-08 33.4 51.3 5 10 0.00077 0.72 10.6 0.5 30 78 334 382 326 385 0.85 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF34-202 - 539 5.7e-08 33.4 51.3 6 10 0.0015 1.4 9.7 1.9 32 78 364 410 356 416 0.84 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF34-202 - 539 5.7e-08 33.4 51.3 7 10 0.00025 0.23 12.2 2.9 29 78 389 438 384 441 0.87 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF34-202 - 539 5.7e-08 33.4 51.3 8 10 0.00015 0.14 12.9 1.6 35 79 423 467 413 469 0.86 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF34-202 - 539 5.7e-08 33.4 51.3 9 10 0.00035 0.33 11.7 2.4 26 78 442 494 437 497 0.86 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF34-202 - 539 5.7e-08 33.4 51.3 10 10 0.00016 0.15 12.8 4.7 33 83 477 527 469 529 0.87 zinc-ribbon family zf_UBZ PF18439.1 32 ZNF34-202 - 539 6e-08 32.1 57.7 1 12 0.36 3.4e+02 0.9 0.2 4 14 175 185 173 192 0.84 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF34-202 - 539 6e-08 32.1 57.7 2 12 0.51 4.8e+02 0.5 0.0 4 12 231 239 228 248 0.87 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF34-202 - 539 6e-08 32.1 57.7 3 12 0.00092 0.87 9.2 0.9 3 20 258 276 256 277 0.86 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF34-202 - 539 6e-08 32.1 57.7 4 12 0.0045 4.2 7.0 0.1 3 13 286 296 285 305 0.78 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF34-202 - 539 6e-08 32.1 57.7 5 12 0.0042 3.9 7.1 0.1 3 14 314 325 312 333 0.85 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF34-202 - 539 6e-08 32.1 57.7 6 12 0.024 23 4.7 0.1 3 14 342 353 340 357 0.86 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF34-202 - 539 6e-08 32.1 57.7 7 12 0.014 13 5.5 0.2 3 21 370 389 368 389 0.83 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF34-202 - 539 6e-08 32.1 57.7 8 12 0.017 16 5.2 0.4 3 21 398 417 396 417 0.88 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF34-202 - 539 6e-08 32.1 57.7 9 12 0.0049 4.6 6.9 0.3 3 20 426 444 424 445 0.84 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF34-202 - 539 6e-08 32.1 57.7 10 12 0.0028 2.6 7.7 0.3 3 18 454 469 452 472 0.81 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF34-202 - 539 6e-08 32.1 57.7 11 12 0.0065 6.2 6.5 0.1 3 15 482 494 480 501 0.82 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF34-202 - 539 6e-08 32.1 57.7 12 12 0.0075 7.1 6.3 1.6 3 20 510 528 508 529 0.79 Ubiquitin-Binding Zinc Finger DZR PF12773.7 49 ZNF34-202 - 539 1.1e-07 31.7 50.8 1 7 1 9.7e+02 -0.1 0.0 28 38 173 183 153 188 0.71 Double zinc ribbon DZR PF12773.7 49 ZNF34-202 - 539 1.1e-07 31.7 50.8 2 7 1.5e-05 0.014 15.4 8.2 11 49 226 292 220 292 0.87 Double zinc ribbon DZR PF12773.7 49 ZNF34-202 - 539 1.1e-07 31.7 50.8 3 7 0.15 1.4e+02 2.6 0.1 28 37 285 294 276 301 0.68 Double zinc ribbon DZR PF12773.7 49 ZNF34-202 - 539 1.1e-07 31.7 50.8 4 7 0.00021 0.2 11.7 0.7 13 39 314 352 304 356 0.87 Double zinc ribbon DZR PF12773.7 49 ZNF34-202 - 539 1.1e-07 31.7 50.8 5 7 0.037 34 4.5 6.3 14 49 371 432 361 432 0.76 Double zinc ribbon DZR PF12773.7 49 ZNF34-202 - 539 1.1e-07 31.7 50.8 6 7 0.19 1.8e+02 2.3 12.3 14 43 427 468 400 497 0.64 Double zinc ribbon DZR PF12773.7 49 ZNF34-202 - 539 1.1e-07 31.7 50.8 7 7 0.0028 2.6 8.1 5.9 13 46 482 527 471 528 0.86 Double zinc ribbon # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF34-202.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF34-202.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF34-202.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF34-202.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF34-202.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:04:41 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZNF34-203 - 457 1e-90 294.4 93.7 1 13 0.0096 7.8 7.1 0.1 12 25 89 102 86 103 0.88 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF34-203 - 457 1e-90 294.4 93.7 2 13 0.075 61 4.3 0.8 2 13 107 118 106 121 0.90 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF34-203 - 457 1e-90 294.4 93.7 3 13 0.00011 0.091 13.2 1.2 10 25 143 158 141 159 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF34-203 - 457 1e-90 294.4 93.7 4 13 7.2e-12 5.9e-09 36.0 0.7 1 25 162 186 162 187 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF34-203 - 457 1e-90 294.4 93.7 5 13 2.8e-08 2.3e-05 24.6 0.4 4 26 193 215 190 215 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF34-203 - 457 1e-90 294.4 93.7 6 13 2.4e-11 2e-08 34.3 1.3 1 25 218 242 218 243 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF34-203 - 457 1e-90 294.4 93.7 7 13 1.7e-11 1.4e-08 34.8 0.2 2 25 247 270 246 271 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF34-203 - 457 1e-90 294.4 93.7 8 13 8.7e-12 7.1e-09 35.7 1.1 2 25 275 298 275 299 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF34-203 - 457 1e-90 294.4 93.7 9 13 3.8e-11 3.1e-08 33.7 0.2 1 24 302 325 302 327 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF34-203 - 457 1e-90 294.4 93.7 10 13 2.4e-11 2e-08 34.3 0.3 2 25 331 354 330 355 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF34-203 - 457 1e-90 294.4 93.7 11 13 2.1e-11 1.7e-08 34.5 2.2 1 26 358 383 358 383 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF34-203 - 457 1e-90 294.4 93.7 12 13 1.1e-09 8.7e-07 29.1 2.8 4 25 389 410 386 411 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF34-203 - 457 1e-90 294.4 93.7 13 13 2.4e-11 2e-08 34.3 1.8 2 26 415 439 414 439 0.93 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZNF34-203 - 457 2.4e-68 223.0 105.3 1 12 1.8e-06 0.0015 18.9 2.4 1 23 92 114 92 114 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF34-203 - 457 2.4e-68 223.0 105.3 2 12 1.8e-08 1.4e-05 25.2 3.5 1 23 148 170 148 170 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF34-203 - 457 2.4e-68 223.0 105.3 3 12 2.7e-07 0.00022 21.5 2.5 1 23 176 198 176 198 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF34-203 - 457 2.4e-68 223.0 105.3 4 12 6.2e-10 5.1e-07 29.8 1.3 1 23 204 226 204 226 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF34-203 - 457 2.4e-68 223.0 105.3 5 12 7.8e-08 6.3e-05 23.2 1.5 1 23 232 254 232 254 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF34-203 - 457 2.4e-68 223.0 105.3 6 12 1.6e-07 0.00013 22.2 0.4 1 23 260 282 260 282 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF34-203 - 457 2.4e-68 223.0 105.3 7 12 1.8e-09 1.5e-06 28.3 0.3 1 23 288 310 288 310 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF34-203 - 457 2.4e-68 223.0 105.3 8 12 1.9e-07 0.00016 22.0 0.7 1 23 316 338 316 338 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF34-203 - 457 2.4e-68 223.0 105.3 9 12 1e-09 8.3e-07 29.1 1.1 1 23 344 366 344 366 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF34-203 - 457 2.4e-68 223.0 105.3 10 12 2.1e-06 0.0017 18.7 6.2 1 23 372 394 372 395 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF34-203 - 457 2.4e-68 223.0 105.3 11 12 8.9e-08 7.2e-05 23.0 1.8 1 23 400 422 400 422 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF34-203 - 457 2.4e-68 223.0 105.3 12 12 9.7e-08 7.9e-05 22.9 5.2 1 23 428 450 428 450 0.99 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZNF34-203 - 457 1e-38 128.6 97.3 1 12 5.1e-05 0.042 14.7 2.0 1 23 92 114 92 115 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF34-203 - 457 1e-38 128.6 97.3 2 12 1.8e-05 0.015 16.1 2.5 1 23 148 170 148 171 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF34-203 - 457 1e-38 128.6 97.3 3 12 6.7e-06 0.0055 17.4 2.2 1 23 176 198 176 199 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF34-203 - 457 1e-38 128.6 97.3 4 12 5.7e-06 0.0047 17.7 0.6 1 23 204 226 204 227 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF34-203 - 457 1e-38 128.6 97.3 5 12 5.9e-05 0.048 14.5 1.2 1 23 232 254 232 255 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF34-203 - 457 1e-38 128.6 97.3 6 12 1.1e-05 0.0092 16.7 0.2 1 23 260 282 260 283 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF34-203 - 457 1e-38 128.6 97.3 7 12 8.3e-06 0.0068 17.2 0.3 1 23 288 310 288 311 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF34-203 - 457 1e-38 128.6 97.3 8 12 0.00017 0.14 13.1 0.8 1 23 316 338 316 339 0.97 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF34-203 - 457 1e-38 128.6 97.3 9 12 6.2e-06 0.005 17.6 0.8 1 23 344 366 344 367 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF34-203 - 457 1e-38 128.6 97.3 10 12 6.5e-06 0.0053 17.5 6.0 1 24 372 395 372 395 0.99 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF34-203 - 457 1e-38 128.6 97.3 11 12 9.3e-05 0.076 13.9 1.1 1 23 400 422 400 423 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF34-203 - 457 1e-38 128.6 97.3 12 12 0.0006 0.49 11.4 4.1 1 23 428 450 428 451 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF34-203 - 457 1.3e-18 66.5 93.9 1 12 0.00059 0.48 10.5 2.9 2 26 92 116 92 117 0.95 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF34-203 - 457 1.3e-18 66.5 93.9 2 12 0.00012 0.095 12.7 2.4 2 24 148 170 147 173 0.87 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF34-203 - 457 1.3e-18 66.5 93.9 3 12 0.0011 0.91 9.6 1.6 2 12 176 186 176 199 0.90 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF34-203 - 457 1.3e-18 66.5 93.9 4 12 2.8e-06 0.0023 17.9 0.2 2 24 204 226 204 229 0.91 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF34-203 - 457 1.3e-18 66.5 93.9 5 12 0.0018 1.4 9.0 2.1 2 24 232 254 232 257 0.90 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF34-203 - 457 1.3e-18 66.5 93.9 6 12 0.00032 0.26 11.3 0.1 2 24 260 282 260 285 0.95 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF34-203 - 457 1.3e-18 66.5 93.9 7 12 0.00028 0.23 11.5 0.6 2 22 288 308 288 312 0.85 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF34-203 - 457 1.3e-18 66.5 93.9 8 12 0.0046 3.7 7.6 1.0 2 24 316 338 316 341 0.84 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF34-203 - 457 1.3e-18 66.5 93.9 9 12 0.0067 5.5 7.1 2.0 2 20 344 362 344 367 0.80 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF34-203 - 457 1.3e-18 66.5 93.9 10 12 0.0038 3.1 7.9 4.1 2 25 372 395 372 397 0.75 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF34-203 - 457 1.3e-18 66.5 93.9 11 12 0.0034 2.8 8.1 0.7 2 24 400 422 400 425 0.89 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF34-203 - 457 1.3e-18 66.5 93.9 12 12 0.0014 1.2 9.3 1.6 2 12 428 438 428 452 0.89 C2H2-type zinc finger Zn-ribbon_8 PF09723.10 40 ZNF34-203 - 457 1.8e-13 50.3 58.8 1 10 0.57 4.7e+02 1.0 0.3 7 18 93 104 92 115 0.84 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF34-203 - 457 1.8e-13 50.3 58.8 2 10 0.00053 0.43 10.7 1.3 8 35 150 184 146 188 0.83 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF34-203 - 457 1.8e-13 50.3 58.8 3 10 0.0049 4 7.6 0.8 6 18 176 188 175 198 0.83 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF34-203 - 457 1.8e-13 50.3 58.8 4 10 4.5e-06 0.0037 17.3 3.6 6 34 204 239 203 243 0.93 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF34-203 - 457 1.8e-13 50.3 58.8 5 10 0.00017 0.14 12.3 4.3 6 34 232 267 231 270 0.89 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF34-203 - 457 1.8e-13 50.3 58.8 6 10 0.00079 0.64 10.2 4.5 6 33 260 294 259 294 0.83 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF34-203 - 457 1.8e-13 50.3 58.8 7 10 0.00021 0.17 12.0 3.8 6 34 288 323 287 329 0.90 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF34-203 - 457 1.8e-13 50.3 58.8 8 10 2.1e-06 0.0017 18.4 2.3 6 35 344 380 343 388 0.90 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF34-203 - 457 1.8e-13 50.3 58.8 9 10 0.00014 0.12 12.5 3.6 6 36 400 437 399 439 0.87 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF34-203 - 457 1.8e-13 50.3 58.8 10 10 0.0072 5.8 7.1 0.9 6 19 428 441 427 448 0.82 Zinc ribbon domain XPA_N PF01286.18 32 ZNF34-203 - 457 2e-12 46.9 53.3 1 12 0.034 28 4.9 0.3 3 17 93 108 91 111 0.74 XPA protein N-terminal XPA_N PF01286.18 32 ZNF34-203 - 457 2e-12 46.9 53.3 2 12 0.54 4.4e+02 1.0 0.0 4 14 150 160 148 161 0.84 XPA protein N-terminal XPA_N PF01286.18 32 ZNF34-203 - 457 2e-12 46.9 53.3 3 12 0.0016 1.3 9.2 2.1 3 14 177 188 175 189 0.92 XPA protein N-terminal XPA_N PF01286.18 32 ZNF34-203 - 457 2e-12 46.9 53.3 4 12 0.0038 3.1 7.9 0.1 3 12 205 214 203 215 0.88 XPA protein N-terminal XPA_N PF01286.18 32 ZNF34-203 - 457 2e-12 46.9 53.3 5 12 0.058 48 4.1 0.1 3 11 233 241 231 244 0.88 XPA protein N-terminal XPA_N PF01286.18 32 ZNF34-203 - 457 2e-12 46.9 53.3 6 12 0.0076 6.2 7.0 0.0 3 13 261 271 259 278 0.87 XPA protein N-terminal XPA_N PF01286.18 32 ZNF34-203 - 457 2e-12 46.9 53.3 7 12 0.0022 1.8 8.7 0.4 3 14 289 300 287 303 0.93 XPA protein N-terminal XPA_N PF01286.18 32 ZNF34-203 - 457 2e-12 46.9 53.3 8 12 0.024 20 5.3 0.2 3 12 317 326 315 333 0.89 XPA protein N-terminal XPA_N PF01286.18 32 ZNF34-203 - 457 2e-12 46.9 53.3 9 12 0.027 22 5.2 0.1 3 14 345 356 343 359 0.90 XPA protein N-terminal XPA_N PF01286.18 32 ZNF34-203 - 457 2e-12 46.9 53.3 10 12 0.001 0.83 9.7 0.2 3 14 373 384 371 387 0.92 XPA protein N-terminal XPA_N PF01286.18 32 ZNF34-203 - 457 2e-12 46.9 53.3 11 12 0.0046 3.8 7.6 0.2 3 17 401 415 399 418 0.87 XPA protein N-terminal XPA_N PF01286.18 32 ZNF34-203 - 457 2e-12 46.9 53.3 12 12 0.0056 4.5 7.4 0.2 3 14 429 440 427 441 0.89 XPA protein N-terminal zf_UBZ PF18439.1 32 ZNF34-203 - 457 8.5e-09 34.9 58.0 1 12 0.35 2.8e+02 1.2 0.2 4 14 93 103 91 110 0.84 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF34-203 - 457 8.5e-09 34.9 58.0 2 12 0.44 3.6e+02 0.9 0.1 4 12 149 157 146 167 0.83 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF34-203 - 457 8.5e-09 34.9 58.0 3 12 0.00088 0.72 9.5 0.9 3 20 176 194 174 195 0.86 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF34-203 - 457 8.5e-09 34.9 58.0 4 12 0.0043 3.5 7.3 0.1 3 13 204 214 203 223 0.78 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF34-203 - 457 8.5e-09 34.9 58.0 5 12 0.004 3.3 7.4 0.1 3 14 232 243 230 251 0.85 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF34-203 - 457 8.5e-09 34.9 58.0 6 12 0.023 19 4.9 0.1 3 14 260 271 258 275 0.86 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF34-203 - 457 8.5e-09 34.9 58.0 7 12 0.013 11 5.8 0.2 3 21 288 307 286 307 0.83 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF34-203 - 457 8.5e-09 34.9 58.0 8 12 0.016 13 5.4 0.4 3 21 316 335 314 335 0.88 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF34-203 - 457 8.5e-09 34.9 58.0 9 12 0.0047 3.8 7.2 0.3 3 20 344 362 342 363 0.84 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF34-203 - 457 8.5e-09 34.9 58.0 10 12 0.0027 2.2 8.0 0.3 3 18 372 387 370 390 0.81 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF34-203 - 457 8.5e-09 34.9 58.0 11 12 0.0063 5.1 6.8 0.1 3 15 400 412 398 419 0.82 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF34-203 - 457 8.5e-09 34.9 58.0 12 12 0.0072 5.9 6.6 1.6 3 20 428 446 426 447 0.79 Ubiquitin-Binding Zinc Finger zinc_ribbon_15 PF17032.5 86 ZNF34-203 - 457 1.9e-08 34.9 51.7 1 9 2.1 1.7e+03 -0.1 0.3 39 55 93 109 85 132 0.68 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF34-203 - 457 1.9e-08 34.9 51.7 2 9 0.00018 0.15 12.9 4.3 30 81 140 191 116 195 0.91 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF34-203 - 457 1.9e-08 34.9 51.7 3 9 0.0018 1.4 9.7 1.6 25 76 191 242 188 247 0.88 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF34-203 - 457 1.9e-08 34.9 51.7 4 9 0.00068 0.56 11.0 0.6 30 78 252 300 243 306 0.85 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF34-203 - 457 1.9e-08 34.9 51.7 5 9 0.0014 1.2 10.0 1.9 32 78 282 328 274 331 0.83 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF34-203 - 457 1.9e-08 34.9 51.7 6 9 0.00024 0.19 12.5 3.1 28 78 306 356 300 359 0.87 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF34-203 - 457 1.9e-08 34.9 51.7 7 9 0.00014 0.11 13.2 1.6 35 79 341 385 331 387 0.86 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF34-203 - 457 1.9e-08 34.9 51.7 8 9 0.00032 0.26 12.1 2.5 26 78 360 412 354 415 0.87 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF34-203 - 457 1.9e-08 34.9 51.7 9 9 0.00015 0.12 13.2 4.7 32 83 394 445 386 447 0.87 zinc-ribbon family DZR PF12773.7 49 ZNF34-203 - 457 2.1e-08 34.1 50.4 1 4 0.93 7.6e+02 0.3 0.0 28 38 91 101 70 107 0.72 Double zinc ribbon DZR PF12773.7 49 ZNF34-203 - 457 2.1e-08 34.1 50.4 2 4 1.7e-05 0.014 15.4 8.6 11 49 144 210 138 210 0.87 Double zinc ribbon DZR PF12773.7 49 ZNF34-203 - 457 2.1e-08 34.1 50.4 3 4 0.0075 6.1 7.0 1.4 14 35 205 238 194 239 0.84 Double zinc ribbon DZR PF12773.7 49 ZNF34-203 - 457 2.1e-08 34.1 50.4 4 4 0.00091 0.74 9.9 4.3 1 39 206 270 206 274 0.71 Double zinc ribbon # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF34-203.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF34-203.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF34-203.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF34-203.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF34-203.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:04:42 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF34-204.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF34-204.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF34-204.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF34-204.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF34-204.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:04:42 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF34-205.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF34-205.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF34-205.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF34-205.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF34-205.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:04:43 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-C2H2 PF00096.26 23 ZNF343-201 - 599 4.7e-73 237.8 98.0 1 13 3.8 2.4e+03 -0.7 1.0 1 19 109 127 109 129 0.78 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF343-201 - 599 4.7e-73 237.8 98.0 2 13 7.9e-09 5.1e-06 26.7 2.2 1 23 269 291 269 291 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF343-201 - 599 4.7e-73 237.8 98.0 3 13 9.6e-10 6.1e-07 29.5 1.1 1 23 297 319 297 319 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF343-201 - 599 4.7e-73 237.8 98.0 4 13 0.00013 0.085 13.3 0.8 1 20 325 344 325 347 0.89 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF343-201 - 599 4.7e-73 237.8 98.0 5 13 4e-08 2.6e-05 24.4 0.8 1 23 353 375 353 375 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF343-201 - 599 4.7e-73 237.8 98.0 6 13 1.7e-08 1.1e-05 25.6 2.8 1 23 381 403 381 403 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF343-201 - 599 4.7e-73 237.8 98.0 7 13 2.8e-09 1.8e-06 28.1 0.5 1 23 409 431 409 431 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF343-201 - 599 4.7e-73 237.8 98.0 8 13 3.1e-07 0.0002 21.6 1.0 1 23 437 459 437 459 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF343-201 - 599 4.7e-73 237.8 98.0 9 13 2e-09 1.3e-06 28.5 0.3 1 23 465 487 465 487 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF343-201 - 599 4.7e-73 237.8 98.0 10 13 1.2e-08 7.6e-06 26.1 1.7 1 23 493 515 493 515 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF343-201 - 599 4.7e-73 237.8 98.0 11 13 3.8e-07 0.00025 21.3 1.1 1 23 521 543 521 543 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF343-201 - 599 4.7e-73 237.8 98.0 12 13 2.6e-09 1.7e-06 28.2 0.5 1 23 549 571 549 571 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF343-201 - 599 4.7e-73 237.8 98.0 13 13 2.3e-09 1.5e-06 28.3 2.3 1 23 577 599 577 599 0.99 Zinc finger, C2H2 type zf-H2C2_2 PF13465.6 26 ZNF343-201 - 599 5e-62 203.7 86.5 1 14 0.079 50 4.6 1.1 13 25 105 119 103 120 0.78 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF343-201 - 599 5e-62 203.7 86.5 2 14 0.0058 3.7 8.1 0.1 11 25 265 279 261 280 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF343-201 - 599 5e-62 203.7 86.5 3 14 1.6e-07 0.0001 22.6 0.5 2 25 284 307 283 308 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF343-201 - 599 5e-62 203.7 86.5 4 14 9.9e-09 6.3e-06 26.4 0.7 1 25 311 335 311 336 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF343-201 - 599 5e-62 203.7 86.5 5 14 6e-08 3.9e-05 23.9 0.1 2 25 340 363 339 364 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF343-201 - 599 5e-62 203.7 86.5 6 14 9.8e-08 6.3e-05 23.2 1.6 3 24 369 390 367 393 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF343-201 - 599 5e-62 203.7 86.5 7 14 3.4e-09 2.2e-06 27.8 0.3 2 25 396 419 395 420 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF343-201 - 599 5e-62 203.7 86.5 8 14 2.2e-06 0.0014 19.0 0.9 2 24 424 446 423 451 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF343-201 - 599 5e-62 203.7 86.5 9 14 3.7e-07 0.00024 21.4 0.1 5 25 455 475 452 476 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF343-201 - 599 5e-62 203.7 86.5 10 14 2.3e-06 0.0015 18.9 0.7 5 25 483 503 480 504 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF343-201 - 599 5e-62 203.7 86.5 11 14 1e-06 0.00066 20.0 1.2 1 24 507 530 507 536 0.80 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF343-201 - 599 5e-62 203.7 86.5 12 14 3.1e-08 2e-05 24.8 0.3 4 25 538 559 535 560 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF343-201 - 599 5e-62 203.7 86.5 13 14 2.3e-06 0.0015 18.9 1.4 5 26 567 588 564 588 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF343-201 - 599 5e-62 203.7 86.5 14 14 1.3 8.5e+02 0.7 0.5 1 9 591 599 591 599 0.93 Zinc-finger double domain zf-C2H2_4 PF13894.6 24 ZNF343-201 - 599 3.6e-51 167.4 93.5 1 13 0.0083 5.3 8.2 1.2 1 21 109 129 109 131 0.90 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF343-201 - 599 3.6e-51 167.4 93.5 2 13 2.9e-06 0.0019 18.9 1.1 1 23 269 291 269 292 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF343-201 - 599 3.6e-51 167.4 93.5 3 13 5.1e-07 0.00033 21.3 0.9 1 23 297 319 297 320 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF343-201 - 599 3.6e-51 167.4 93.5 4 13 1.4e-05 0.0091 16.8 0.9 1 23 325 347 325 348 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF343-201 - 599 3.6e-51 167.4 93.5 5 13 1.6e-06 0.001 19.7 0.8 1 23 353 375 353 376 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF343-201 - 599 3.6e-51 167.4 93.5 6 13 6.5e-06 0.0041 17.8 2.4 1 23 381 403 381 404 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF343-201 - 599 3.6e-51 167.4 93.5 7 13 3.5e-06 0.0022 18.7 0.3 1 23 409 431 409 432 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF343-201 - 599 3.6e-51 167.4 93.5 8 13 9.6e-06 0.0061 17.3 0.9 1 23 437 459 437 460 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF343-201 - 599 3.6e-51 167.4 93.5 9 13 5.8e-06 0.0037 18.0 0.3 1 23 465 487 465 488 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF343-201 - 599 3.6e-51 167.4 93.5 10 13 5.1e-06 0.0033 18.1 1.1 1 23 493 515 493 516 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF343-201 - 599 3.6e-51 167.4 93.5 11 13 3e-06 0.0019 18.9 0.9 1 23 521 543 521 544 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF343-201 - 599 3.6e-51 167.4 93.5 12 13 2.6e-06 0.0016 19.1 0.6 1 23 549 571 549 572 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF343-201 - 599 3.6e-51 167.4 93.5 13 13 1.4e-05 0.0088 16.8 1.5 1 23 577 599 577 599 0.95 C2H2-type zinc finger KRAB PF01352.27 42 ZNF343-201 - 599 2.3e-21 75.2 0.2 1 1 6.9e-24 4.4e-21 74.3 0.2 1 41 61 101 61 101 0.98 KRAB box zf-C2H2_jaz PF12171.8 27 ZNF343-201 - 599 1.8e-17 63.1 31.4 1 11 0.011 6.9 7.1 0.0 2 20 269 287 268 287 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF343-201 - 599 1.8e-17 63.1 31.4 2 11 0.012 7.9 6.9 0.1 2 24 297 319 296 320 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF343-201 - 599 1.8e-17 63.1 31.4 3 11 0.00092 0.59 10.5 0.1 2 24 353 375 352 376 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF343-201 - 599 1.8e-17 63.1 31.4 4 11 0.018 11 6.4 0.2 2 22 381 401 380 401 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF343-201 - 599 1.8e-17 63.1 31.4 5 11 0.014 9 6.7 0.0 2 24 409 431 408 432 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF343-201 - 599 1.8e-17 63.1 31.4 6 11 0.18 1.1e+02 3.2 0.1 2 24 437 459 436 460 0.91 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF343-201 - 599 1.8e-17 63.1 31.4 7 11 0.0075 4.8 7.6 0.0 2 24 465 487 464 492 0.91 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF343-201 - 599 1.8e-17 63.1 31.4 8 11 0.015 9.4 6.7 0.2 2 24 493 515 492 516 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF343-201 - 599 1.8e-17 63.1 31.4 9 11 0.026 16 5.9 0.1 2 24 521 543 520 544 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF343-201 - 599 1.8e-17 63.1 31.4 10 11 0.003 1.9 8.9 0.1 2 24 549 571 548 576 0.91 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF343-201 - 599 1.8e-17 63.1 31.4 11 11 0.0083 5.3 7.4 0.2 2 24 577 599 576 599 0.92 Zinc-finger double-stranded RNA-binding Zn-ribbon_8 PF09723.10 40 ZNF343-201 - 599 2.8e-08 33.8 61.4 1 11 6.3 4e+03 -2.0 0.3 6 11 109 114 105 125 0.76 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF343-201 - 599 2.8e-08 33.8 61.4 2 11 0.035 22 5.2 0.1 6 17 269 280 268 295 0.81 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF343-201 - 599 2.8e-08 33.8 61.4 3 11 6.3e-05 0.041 14.0 2.8 6 36 297 334 295 338 0.88 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF343-201 - 599 2.8e-08 33.8 61.4 4 11 0.0042 2.7 8.2 4.3 6 34 353 388 352 392 0.87 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF343-201 - 599 2.8e-08 33.8 61.4 5 11 0.00083 0.53 10.4 3.1 6 34 381 416 379 421 0.91 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF343-201 - 599 2.8e-08 33.8 61.4 6 11 0.00017 0.11 12.6 3.1 6 34 409 444 407 450 0.90 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF343-201 - 599 2.8e-08 33.8 61.4 7 11 0.012 7.8 6.7 4.2 6 37 437 475 435 479 0.78 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF343-201 - 599 2.8e-08 33.8 61.4 8 11 0.0081 5.2 7.3 2.7 6 33 465 499 464 500 0.86 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF343-201 - 599 2.8e-08 33.8 61.4 9 11 0.0017 1.1 9.5 2.6 6 34 493 528 491 533 0.89 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF343-201 - 599 2.8e-08 33.8 61.4 10 11 0.00057 0.37 11.0 2.5 6 34 549 584 548 589 0.87 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF343-201 - 599 2.8e-08 33.8 61.4 11 11 0.028 18 5.5 0.4 6 16 577 587 576 595 0.85 Zinc ribbon domain zf-C2H2_11 PF16622.5 29 ZNF343-201 - 599 6.9e-08 32.1 82.8 1 13 0.79 5.1e+02 0.6 3.6 7 24 111 128 109 131 0.91 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF343-201 - 599 6.9e-08 32.1 82.8 2 13 0.06 38 4.1 2.1 7 26 271 290 269 291 0.94 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF343-201 - 599 6.9e-08 32.1 82.8 3 13 0.00033 0.21 11.4 1.0 7 24 299 316 297 318 0.93 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF343-201 - 599 6.9e-08 32.1 82.8 4 13 0.00014 0.089 12.6 0.3 7 23 327 343 323 345 0.95 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF343-201 - 599 6.9e-08 32.1 82.8 5 13 0.0051 3.2 7.6 0.2 7 24 355 372 351 374 0.92 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF343-201 - 599 6.9e-08 32.1 82.8 6 13 0.00026 0.16 11.7 1.4 7 26 383 402 380 403 0.95 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF343-201 - 599 6.9e-08 32.1 82.8 7 13 0.0062 3.9 7.3 0.1 7 23 411 427 408 430 0.86 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF343-201 - 599 6.9e-08 32.1 82.8 8 13 0.072 46 3.9 0.2 7 14 439 446 433 455 0.83 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF343-201 - 599 6.9e-08 32.1 82.8 9 13 0.26 1.7e+02 2.1 0.2 7 15 467 475 465 484 0.85 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF343-201 - 599 6.9e-08 32.1 82.8 10 13 0.025 16 5.3 0.8 7 24 495 512 493 514 0.92 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF343-201 - 599 6.9e-08 32.1 82.8 11 13 0.084 54 3.7 0.2 7 14 523 530 517 539 0.84 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF343-201 - 599 6.9e-08 32.1 82.8 12 13 0.13 82 3.1 0.3 7 15 551 559 549 568 0.86 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF343-201 - 599 6.9e-08 32.1 82.8 13 13 0.0015 0.98 9.2 1.0 7 24 579 596 577 598 0.93 zinc-finger C2H2-type zf-trcl PF13451.6 48 ZNF343-201 - 599 8.1e-07 28.8 43.1 1 12 0.027 17 5.4 0.1 3 14 267 278 266 279 0.91 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF343-201 - 599 8.1e-07 28.8 43.1 2 12 0.088 56 3.7 0.0 3 14 295 306 293 308 0.88 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF343-201 - 599 8.1e-07 28.8 43.1 3 12 0.031 20 5.2 0.1 2 14 322 334 321 335 0.88 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF343-201 - 599 8.1e-07 28.8 43.1 4 12 0.061 39 4.2 0.1 2 14 350 362 349 363 0.87 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF343-201 - 599 8.1e-07 28.8 43.1 5 12 0.14 87 3.1 0.3 3 14 379 390 377 391 0.89 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF343-201 - 599 8.1e-07 28.8 43.1 6 12 0.038 25 4.9 0.0 3 14 407 418 405 419 0.88 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF343-201 - 599 8.1e-07 28.8 43.1 7 12 0.044 28 4.7 0.7 3 14 435 446 433 447 0.87 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF343-201 - 599 8.1e-07 28.8 43.1 8 12 0.24 1.5e+02 2.4 0.0 3 14 463 474 461 475 0.88 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF343-201 - 599 8.1e-07 28.8 43.1 9 12 0.12 79 3.3 0.1 3 14 491 502 489 504 0.83 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF343-201 - 599 8.1e-07 28.8 43.1 10 12 0.053 34 4.4 0.4 2 14 518 530 517 531 0.87 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF343-201 - 599 8.1e-07 28.8 43.1 11 12 0.095 61 3.6 0.0 3 14 547 558 545 559 0.88 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF343-201 - 599 8.1e-07 28.8 43.1 12 12 0.018 11 6.0 0.1 3 14 575 586 573 590 0.88 Probable zinc-ribbon domain # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF343-201.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF343-201.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF343-201.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF343-201.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF343-201.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:04:43 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF343-202.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF343-202.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF343-202.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF343-202.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF343-202.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:04:44 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- KRAB PF01352.27 42 ZNF343-203 - 118 2.1e-23 81.7 0.0 1 1 3.6e-27 3.2e-23 81.1 0.0 1 42 61 102 61 102 0.99 KRAB box # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF343-203.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF343-203.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF343-203.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF343-203.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF343-203.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:04:44 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF343-204.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF343-204.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF343-204.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF343-204.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF343-204.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:04:45 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF343-205.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF343-205.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF343-205.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF343-205.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF343-205.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:04:45 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-C2H2 PF00096.26 23 ZNF343-206 - 509 4.4e-74 241.0 98.0 1 13 3.1 2e+03 -0.4 1.0 1 19 19 37 19 39 0.78 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF343-206 - 509 4.4e-74 241.0 98.0 2 13 6.5e-09 4.2e-06 26.9 2.2 1 23 179 201 179 201 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF343-206 - 509 4.4e-74 241.0 98.0 3 13 7.9e-10 5e-07 29.8 1.1 1 23 207 229 207 229 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF343-206 - 509 4.4e-74 241.0 98.0 4 13 0.00011 0.071 13.6 0.8 1 20 235 254 235 257 0.89 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF343-206 - 509 4.4e-74 241.0 98.0 5 13 3.3e-08 2.1e-05 24.7 0.8 1 23 263 285 263 285 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF343-206 - 509 4.4e-74 241.0 98.0 6 13 1.4e-08 9e-06 25.9 2.8 1 23 291 313 291 313 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF343-206 - 509 4.4e-74 241.0 98.0 7 13 2.3e-09 1.5e-06 28.4 0.5 1 23 319 341 319 341 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF343-206 - 509 4.4e-74 241.0 98.0 8 13 2.5e-07 0.00016 21.9 1.0 1 23 347 369 347 369 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF343-206 - 509 4.4e-74 241.0 98.0 9 13 1.7e-09 1.1e-06 28.8 0.3 1 23 375 397 375 397 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF343-206 - 509 4.4e-74 241.0 98.0 10 13 9.8e-09 6.3e-06 26.4 1.7 1 23 403 425 403 425 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF343-206 - 509 4.4e-74 241.0 98.0 11 13 3.2e-07 0.0002 21.6 1.1 1 23 431 453 431 453 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF343-206 - 509 4.4e-74 241.0 98.0 12 13 2.1e-09 1.4e-06 28.4 0.5 1 23 459 481 459 481 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF343-206 - 509 4.4e-74 241.0 98.0 13 13 1.9e-09 1.2e-06 28.6 2.3 1 23 487 509 487 509 0.99 Zinc finger, C2H2 type zf-H2C2_2 PF13465.6 26 ZNF343-206 - 509 3.9e-63 207.2 86.6 1 14 0.065 42 4.8 1.1 13 25 15 29 13 30 0.78 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF343-206 - 509 3.9e-63 207.2 86.6 2 14 0.0048 3.1 8.4 0.1 11 25 175 189 171 190 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF343-206 - 509 3.9e-63 207.2 86.6 3 14 1.3e-07 8.3e-05 22.8 0.5 2 25 194 217 193 218 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF343-206 - 509 3.9e-63 207.2 86.6 4 14 8.1e-09 5.2e-06 26.6 0.7 1 25 221 245 221 246 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF343-206 - 509 3.9e-63 207.2 86.6 5 14 5e-08 3.2e-05 24.2 0.1 2 25 250 273 249 274 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF343-206 - 509 3.9e-63 207.2 86.6 6 14 8.1e-08 5.2e-05 23.5 1.6 3 24 279 300 277 303 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF343-206 - 509 3.9e-63 207.2 86.6 7 14 2.8e-09 1.8e-06 28.1 0.3 2 25 306 329 305 330 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF343-206 - 509 3.9e-63 207.2 86.6 8 14 1.8e-06 0.0012 19.2 0.9 2 24 334 356 333 361 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF343-206 - 509 3.9e-63 207.2 86.6 9 14 3e-07 0.00019 21.7 0.1 5 25 365 385 362 386 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF343-206 - 509 3.9e-63 207.2 86.6 10 14 1.9e-06 0.0012 19.2 0.7 5 25 393 413 390 414 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF343-206 - 509 3.9e-63 207.2 86.6 11 14 8.7e-07 0.00056 20.2 1.3 1 24 417 440 417 446 0.80 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF343-206 - 509 3.9e-63 207.2 86.6 12 14 2.5e-08 1.6e-05 25.1 0.3 4 25 448 469 445 470 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF343-206 - 509 3.9e-63 207.2 86.6 13 14 1.9e-06 0.0012 19.2 1.4 5 26 477 498 474 498 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF343-206 - 509 3.9e-63 207.2 86.6 14 14 1.1 7.1e+02 0.9 0.5 1 9 501 509 501 509 0.93 Zinc-finger double domain zf-C2H2_4 PF13894.6 24 ZNF343-206 - 509 3.4e-52 170.6 93.5 1 13 0.0068 4.4 8.4 1.2 1 21 19 39 19 41 0.90 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF343-206 - 509 3.4e-52 170.6 93.5 2 13 2.4e-06 0.0015 19.2 1.1 1 23 179 201 179 202 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF343-206 - 509 3.4e-52 170.6 93.5 3 13 4.2e-07 0.00027 21.5 0.9 1 23 207 229 207 230 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF343-206 - 509 3.4e-52 170.6 93.5 4 13 1.2e-05 0.0075 17.0 0.9 1 23 235 257 235 258 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF343-206 - 509 3.4e-52 170.6 93.5 5 13 1.3e-06 0.00084 20.0 0.8 1 23 263 285 263 286 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF343-206 - 509 3.4e-52 170.6 93.5 6 13 5.3e-06 0.0034 18.1 2.4 1 23 291 313 291 314 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF343-206 - 509 3.4e-52 170.6 93.5 7 13 2.9e-06 0.0018 18.9 0.3 1 23 319 341 319 342 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF343-206 - 509 3.4e-52 170.6 93.5 8 13 7.9e-06 0.0051 17.6 0.9 1 23 347 369 347 370 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF343-206 - 509 3.4e-52 170.6 93.5 9 13 4.8e-06 0.0031 18.2 0.3 1 23 375 397 375 398 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF343-206 - 509 3.4e-52 170.6 93.5 10 13 4.2e-06 0.0027 18.4 1.1 1 23 403 425 403 426 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF343-206 - 509 3.4e-52 170.6 93.5 11 13 2.5e-06 0.0016 19.1 0.9 1 23 431 453 431 454 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF343-206 - 509 3.4e-52 170.6 93.5 12 13 2.1e-06 0.0014 19.3 0.6 1 23 459 481 459 482 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF343-206 - 509 3.4e-52 170.6 93.5 13 13 1.1e-05 0.0072 17.1 1.5 1 23 487 509 487 509 0.95 C2H2-type zinc finger zf-C2H2_jaz PF12171.8 27 ZNF343-206 - 509 2.2e-18 66.0 31.4 1 11 0.0089 5.7 7.3 0.0 2 20 179 197 178 197 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF343-206 - 509 2.2e-18 66.0 31.4 2 11 0.01 6.5 7.2 0.1 2 24 207 229 206 230 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF343-206 - 509 2.2e-18 66.0 31.4 3 11 0.00076 0.49 10.8 0.1 2 24 263 285 262 286 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF343-206 - 509 2.2e-18 66.0 31.4 4 11 0.015 9.4 6.7 0.2 2 22 291 311 290 311 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF343-206 - 509 2.2e-18 66.0 31.4 5 11 0.012 7.4 7.0 0.0 2 24 319 341 318 342 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF343-206 - 509 2.2e-18 66.0 31.4 6 11 0.14 93 3.5 0.1 2 24 347 369 346 370 0.91 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF343-206 - 509 2.2e-18 66.0 31.4 7 11 0.0061 3.9 7.9 0.0 2 24 375 397 374 402 0.91 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF343-206 - 509 2.2e-18 66.0 31.4 8 11 0.012 7.9 6.9 0.2 2 24 403 425 402 426 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF343-206 - 509 2.2e-18 66.0 31.4 9 11 0.021 14 6.1 0.1 2 24 431 453 430 454 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF343-206 - 509 2.2e-18 66.0 31.4 10 11 0.0024 1.6 9.1 0.1 2 24 459 481 458 486 0.91 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF343-206 - 509 2.2e-18 66.0 31.4 11 11 0.0069 4.4 7.7 0.2 2 24 487 509 486 509 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_11 PF16622.5 29 ZNF343-206 - 509 6.5e-09 35.4 82.8 1 13 0.66 4.2e+02 0.8 3.6 7 24 21 38 19 41 0.91 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF343-206 - 509 6.5e-09 35.4 82.8 2 13 0.05 32 4.4 2.1 7 26 181 200 179 201 0.94 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF343-206 - 509 6.5e-09 35.4 82.8 3 13 0.00028 0.18 11.6 1.0 7 24 209 226 207 228 0.93 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF343-206 - 509 6.5e-09 35.4 82.8 4 13 0.00012 0.074 12.8 0.3 7 23 237 253 233 255 0.95 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF343-206 - 509 6.5e-09 35.4 82.8 5 13 0.0042 2.7 7.8 0.2 7 24 265 282 261 284 0.92 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF343-206 - 509 6.5e-09 35.4 82.8 6 13 0.00021 0.14 12.0 1.4 7 26 293 312 290 313 0.95 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF343-206 - 509 6.5e-09 35.4 82.8 7 13 0.0051 3.3 7.6 0.1 7 23 321 337 318 340 0.86 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF343-206 - 509 6.5e-09 35.4 82.8 8 13 0.06 39 4.1 0.2 7 14 349 356 343 365 0.83 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF343-206 - 509 6.5e-09 35.4 82.8 9 13 0.22 1.4e+02 2.4 0.2 7 15 377 385 375 394 0.85 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF343-206 - 509 6.5e-09 35.4 82.8 10 13 0.021 13 5.6 0.8 7 24 405 422 403 424 0.92 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF343-206 - 509 6.5e-09 35.4 82.8 11 13 0.07 45 3.9 0.2 7 14 433 440 427 449 0.84 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF343-206 - 509 6.5e-09 35.4 82.8 12 13 0.11 68 3.3 0.3 7 15 461 469 459 478 0.86 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF343-206 - 509 6.5e-09 35.4 82.8 13 13 0.0013 0.81 9.5 1.0 7 24 489 506 487 508 0.93 zinc-finger C2H2-type Zn-ribbon_8 PF09723.10 40 ZNF343-206 - 509 1.3e-08 34.8 62.2 1 12 5 3.2e+03 -1.7 0.3 6 11 19 24 15 36 0.76 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF343-206 - 509 1.3e-08 34.8 62.2 2 12 0.00052 0.33 11.1 2.0 6 33 179 213 178 214 0.81 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF343-206 - 509 1.3e-08 34.8 62.2 3 12 5.5e-05 0.035 14.2 2.8 6 36 207 244 206 248 0.88 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF343-206 - 509 1.3e-08 34.8 62.2 4 12 0.0033 2.1 8.5 4.2 6 34 263 298 262 301 0.86 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF343-206 - 509 1.3e-08 34.8 62.2 5 12 0.0007 0.45 10.7 3.1 6 34 291 326 290 330 0.91 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF343-206 - 509 1.3e-08 34.8 62.2 6 12 0.00011 0.072 13.2 2.8 6 34 319 354 317 360 0.90 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF343-206 - 509 1.3e-08 34.8 62.2 7 12 0.013 8.2 6.6 4.5 6 37 347 385 345 388 0.78 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF343-206 - 509 1.3e-08 34.8 62.2 8 12 0.0075 4.8 7.4 2.9 6 33 375 409 374 410 0.86 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF343-206 - 509 1.3e-08 34.8 62.2 9 12 0.0017 1.1 9.5 2.9 6 34 403 438 402 443 0.89 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF343-206 - 509 1.3e-08 34.8 62.2 10 12 0.005 3.2 7.9 3.2 6 37 431 469 430 473 0.77 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF343-206 - 509 1.3e-08 34.8 62.2 11 12 0.00071 0.46 10.7 3.1 6 34 459 494 457 499 0.87 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF343-206 - 509 1.3e-08 34.8 62.2 12 12 0.023 15 5.8 0.4 6 16 487 497 485 505 0.86 Zinc ribbon domain ADK_lid PF05191.14 36 ZNF343-206 - 509 1.5e-07 31.3 46.6 1 11 0.00011 0.068 13.2 0.4 3 33 180 218 179 220 0.79 Adenylate kinase, active site lid ADK_lid PF05191.14 36 ZNF343-206 - 509 1.5e-07 31.3 46.6 2 11 0.00066 0.42 10.6 1.2 3 30 208 243 207 248 0.78 Adenylate kinase, active site lid ADK_lid PF05191.14 36 ZNF343-206 - 509 1.5e-07 31.3 46.6 3 11 0.037 23 5.0 0.2 3 12 264 273 263 289 0.84 Adenylate kinase, active site lid ADK_lid PF05191.14 36 ZNF343-206 - 509 1.5e-07 31.3 46.6 4 11 0.00039 0.25 11.3 1.0 3 36 292 333 291 333 0.79 Adenylate kinase, active site lid ADK_lid PF05191.14 36 ZNF343-206 - 509 1.5e-07 31.3 46.6 5 11 0.004 2.6 8.1 2.0 3 28 320 353 318 356 0.69 Adenylate kinase, active site lid ADK_lid PF05191.14 36 ZNF343-206 - 509 1.5e-07 31.3 46.6 6 11 0.029 18 5.4 2.8 3 29 348 382 347 388 0.80 Adenylate kinase, active site lid ADK_lid PF05191.14 36 ZNF343-206 - 509 1.5e-07 31.3 46.6 7 11 0.087 56 3.8 1.5 3 14 376 387 375 408 0.64 Adenylate kinase, active site lid ADK_lid PF05191.14 36 ZNF343-206 - 509 1.5e-07 31.3 46.6 8 11 0.069 44 4.2 2.6 3 28 404 437 403 444 0.69 Adenylate kinase, active site lid ADK_lid PF05191.14 36 ZNF343-206 - 509 1.5e-07 31.3 46.6 9 11 0.033 21 5.2 3.5 3 29 432 466 430 472 0.79 Adenylate kinase, active site lid ADK_lid PF05191.14 36 ZNF343-206 - 509 1.5e-07 31.3 46.6 10 11 0.03 19 5.3 0.2 3 14 460 471 459 481 0.84 Adenylate kinase, active site lid ADK_lid PF05191.14 36 ZNF343-206 - 509 1.5e-07 31.3 46.6 11 11 0.034 22 5.2 0.4 3 14 488 499 487 506 0.79 Adenylate kinase, active site lid XPA_N PF01286.18 32 ZNF343-206 - 509 1.5e-07 31.4 40.0 1 12 0.088 57 3.9 0.0 3 13 180 190 178 198 0.87 XPA protein N-terminal XPA_N PF01286.18 32 ZNF343-206 - 509 1.5e-07 31.4 40.0 2 12 0.11 69 3.6 0.0 3 12 208 217 206 225 0.84 XPA protein N-terminal XPA_N PF01286.18 32 ZNF343-206 - 509 1.5e-07 31.4 40.0 3 12 0.089 57 3.9 0.1 4 12 237 245 234 251 0.88 XPA protein N-terminal XPA_N PF01286.18 32 ZNF343-206 - 509 1.5e-07 31.4 40.0 4 12 0.16 1e+02 3.1 0.1 3 12 264 273 262 276 0.87 XPA protein N-terminal XPA_N PF01286.18 32 ZNF343-206 - 509 1.5e-07 31.4 40.0 5 12 0.0067 4.3 7.5 0.4 3 13 292 302 290 309 0.84 XPA protein N-terminal XPA_N PF01286.18 32 ZNF343-206 - 509 1.5e-07 31.4 40.0 6 12 0.067 43 4.3 0.0 3 12 320 329 318 337 0.85 XPA protein N-terminal XPA_N PF01286.18 32 ZNF343-206 - 509 1.5e-07 31.4 40.0 7 12 0.018 11 6.1 0.3 3 13 348 358 346 362 0.91 XPA protein N-terminal XPA_N PF01286.18 32 ZNF343-206 - 509 1.5e-07 31.4 40.0 8 12 0.23 1.5e+02 2.5 0.0 3 12 376 385 374 393 0.80 XPA protein N-terminal XPA_N PF01286.18 32 ZNF343-206 - 509 1.5e-07 31.4 40.0 9 12 0.23 1.4e+02 2.6 0.3 24 29 404 409 401 415 0.65 XPA protein N-terminal XPA_N PF01286.18 32 ZNF343-206 - 509 1.5e-07 31.4 40.0 10 12 0.02 13 5.9 0.4 3 13 432 442 430 446 0.91 XPA protein N-terminal XPA_N PF01286.18 32 ZNF343-206 - 509 1.5e-07 31.4 40.0 11 12 0.1 66 3.7 0.0 3 12 460 469 458 477 0.80 XPA protein N-terminal XPA_N PF01286.18 32 ZNF343-206 - 509 1.5e-07 31.4 40.0 12 12 0.096 62 3.8 0.0 3 12 488 497 487 505 0.85 XPA protein N-terminal DZR PF12773.7 49 ZNF343-206 - 509 5.8e-07 29.4 48.7 1 2 6.4 4.1e+03 -2.1 0.4 29 34 19 24 12 31 0.67 Double zinc ribbon DZR PF12773.7 49 ZNF343-206 - 509 5.8e-07 29.4 48.7 2 2 0.00011 0.072 13.1 3.0 13 49 179 241 169 248 0.71 Double zinc ribbon # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF343-206.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF343-206.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF343-206.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF343-206.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF343-206.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:04:46 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-C2H2 PF00096.26 23 ZNF343-207 - 640 9.3e-72 233.7 101.2 1 13 3.6 2.6e+03 -0.8 1.0 1 19 150 168 150 170 0.78 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF343-207 - 640 9.3e-72 233.7 101.2 2 13 7.6e-09 5.5e-06 26.6 2.2 1 23 310 332 310 332 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF343-207 - 640 9.3e-72 233.7 101.2 3 13 9.2e-10 6.6e-07 29.4 1.1 1 23 338 360 338 360 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF343-207 - 640 9.3e-72 233.7 101.2 4 13 0.00013 0.092 13.2 0.8 1 20 366 385 366 388 0.89 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF343-207 - 640 9.3e-72 233.7 101.2 5 13 3.8e-08 2.8e-05 24.3 0.8 1 23 394 416 394 416 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF343-207 - 640 9.3e-72 233.7 101.2 6 13 1.6e-08 1.2e-05 25.5 2.8 1 23 422 444 422 444 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF343-207 - 640 9.3e-72 233.7 101.2 7 13 2.7e-09 1.9e-06 28.0 0.5 1 23 450 472 450 472 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF343-207 - 640 9.3e-72 233.7 101.2 8 13 3e-07 0.00021 21.5 1.0 1 23 478 500 478 500 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF343-207 - 640 9.3e-72 233.7 101.2 9 13 1.9e-09 1.4e-06 28.4 0.3 1 23 506 528 506 528 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF343-207 - 640 9.3e-72 233.7 101.2 10 13 1.1e-08 8.2e-06 26.0 1.7 1 23 534 556 534 556 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF343-207 - 640 9.3e-72 233.7 101.2 11 13 3.7e-07 0.00027 21.2 1.1 1 23 562 584 562 584 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF343-207 - 640 9.3e-72 233.7 101.2 12 13 2.5e-09 1.8e-06 28.1 0.5 1 23 590 612 590 612 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF343-207 - 640 9.3e-72 233.7 101.2 13 13 2.3e-09 1.6e-06 28.2 2.3 1 23 618 640 618 640 0.99 Zinc finger, C2H2 type zf-H2C2_2 PF13465.6 26 ZNF343-207 - 640 1.4e-62 205.5 83.4 1 14 0.054 39 4.9 0.8 12 25 145 160 142 161 0.79 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF343-207 - 640 1.4e-62 205.5 83.4 2 14 0.0056 4 8.0 0.1 11 25 306 320 302 321 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF343-207 - 640 1.4e-62 205.5 83.4 3 14 1.5e-07 0.00011 22.5 0.5 2 25 325 348 324 349 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF343-207 - 640 1.4e-62 205.5 83.4 4 14 9.6e-09 6.8e-06 26.3 0.7 1 25 352 376 352 377 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF343-207 - 640 1.4e-62 205.5 83.4 5 14 5.8e-08 4.2e-05 23.8 0.1 2 25 381 404 380 405 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF343-207 - 640 1.4e-62 205.5 83.4 6 14 4.5e-08 3.2e-05 24.1 0.5 3 24 410 431 408 431 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF343-207 - 640 1.4e-62 205.5 83.4 7 14 3.3e-09 2.4e-06 27.7 0.3 2 25 437 460 436 461 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF343-207 - 640 1.4e-62 205.5 83.4 8 14 2.1e-06 0.0015 18.8 0.9 2 24 465 487 464 492 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF343-207 - 640 1.4e-62 205.5 83.4 9 14 3.6e-07 0.00025 21.3 0.1 5 25 496 516 493 517 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF343-207 - 640 1.4e-62 205.5 83.4 10 14 2.2e-06 0.0016 18.8 0.7 5 25 524 544 521 545 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF343-207 - 640 1.4e-62 205.5 83.4 11 14 9.8e-07 0.0007 19.9 1.2 1 24 548 571 548 577 0.80 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF343-207 - 640 1.4e-62 205.5 83.4 12 14 2.9e-08 2.1e-05 24.7 0.3 4 25 579 600 576 601 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF343-207 - 640 1.4e-62 205.5 83.4 13 14 2.2e-06 0.0016 18.8 1.4 5 26 608 629 605 629 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF343-207 - 640 1.4e-62 205.5 83.4 14 14 1.3 9.2e+02 0.6 0.5 1 9 632 640 632 640 0.93 Zinc-finger double domain zf-C2H2_4 PF13894.6 24 ZNF343-207 - 640 9.3e-51 166.1 93.5 1 13 0.008 5.7 8.1 1.2 1 21 150 170 150 172 0.90 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF343-207 - 640 9.3e-51 166.1 93.5 2 13 2.8e-06 0.002 18.8 1.1 1 23 310 332 310 333 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF343-207 - 640 9.3e-51 166.1 93.5 3 13 4.9e-07 0.00035 21.2 0.9 1 23 338 360 338 361 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF343-207 - 640 9.3e-51 166.1 93.5 4 13 1.4e-05 0.0099 16.6 0.9 1 23 366 388 366 389 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF343-207 - 640 9.3e-51 166.1 93.5 5 13 1.5e-06 0.0011 19.6 0.8 1 23 394 416 394 417 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF343-207 - 640 9.3e-51 166.1 93.5 6 13 6.3e-06 0.0045 17.7 2.4 1 23 422 444 422 445 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF343-207 - 640 9.3e-51 166.1 93.5 7 13 3.4e-06 0.0024 18.6 0.3 1 23 450 472 450 473 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF343-207 - 640 9.3e-51 166.1 93.5 8 13 9.3e-06 0.0067 17.2 0.9 1 23 478 500 478 501 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF343-207 - 640 9.3e-51 166.1 93.5 9 13 5.6e-06 0.004 17.9 0.3 1 23 506 528 506 529 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF343-207 - 640 9.3e-51 166.1 93.5 10 13 4.9e-06 0.0035 18.0 1.1 1 23 534 556 534 557 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF343-207 - 640 9.3e-51 166.1 93.5 11 13 2.9e-06 0.0021 18.8 0.9 1 23 562 584 562 585 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF343-207 - 640 9.3e-51 166.1 93.5 12 13 2.5e-06 0.0018 19.0 0.6 1 23 590 612 590 613 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF343-207 - 640 9.3e-51 166.1 93.5 13 13 1.3e-05 0.0095 16.7 1.5 1 23 618 640 618 640 0.95 C2H2-type zinc finger KRAB PF01352.27 42 ZNF343-207 - 640 8.2e-22 76.6 0.1 1 1 2e-24 1.4e-21 75.8 0.1 1 42 61 102 61 102 0.98 KRAB box zf-C2H2_jaz PF12171.8 27 ZNF343-207 - 640 4.3e-17 61.9 31.5 1 11 0.01 7.5 7.0 0.0 2 20 310 328 309 328 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF343-207 - 640 4.3e-17 61.9 31.5 2 11 0.012 8.5 6.8 0.1 2 24 338 360 337 361 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF343-207 - 640 4.3e-17 61.9 31.5 3 11 0.00089 0.64 10.4 0.1 2 24 394 416 393 417 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF343-207 - 640 4.3e-17 61.9 31.5 4 11 0.017 12 6.3 0.2 2 22 422 442 421 442 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF343-207 - 640 4.3e-17 61.9 31.5 5 11 0.014 9.7 6.6 0.0 2 24 450 472 449 473 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF343-207 - 640 4.3e-17 61.9 31.5 6 11 0.17 1.2e+02 3.1 0.1 2 24 478 500 477 501 0.91 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF343-207 - 640 4.3e-17 61.9 31.5 7 11 0.0072 5.2 7.5 0.0 2 24 506 528 505 533 0.91 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF343-207 - 640 4.3e-17 61.9 31.5 8 11 0.014 10 6.5 0.2 2 24 534 556 533 557 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF343-207 - 640 4.3e-17 61.9 31.5 9 11 0.025 18 5.8 0.1 2 24 562 584 561 585 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF343-207 - 640 4.3e-17 61.9 31.5 10 11 0.0029 2.1 8.8 0.1 2 24 590 612 589 617 0.91 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF343-207 - 640 4.3e-17 61.9 31.5 11 11 0.0081 5.8 7.3 0.2 2 24 618 640 617 640 0.92 Zinc-finger double-stranded RNA-binding Zn-ribbon_8 PF09723.10 40 ZNF343-207 - 640 4e-08 33.2 61.0 1 12 6.1 4.3e+03 -2.1 0.3 6 11 150 155 146 166 0.76 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF343-207 - 640 4e-08 33.2 61.0 2 12 0.00053 0.38 10.9 1.8 6 33 310 344 309 345 0.81 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF343-207 - 640 4e-08 33.2 61.0 3 12 6.8e-05 0.049 13.8 2.9 6 36 338 375 336 379 0.88 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF343-207 - 640 4e-08 33.2 61.0 4 12 0.0039 2.8 8.1 4.3 6 34 394 429 393 434 0.86 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF343-207 - 640 4e-08 33.2 61.0 5 12 0.00084 0.61 10.3 3.1 6 34 422 457 421 461 0.91 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF343-207 - 640 4e-08 33.2 61.0 6 12 0.00016 0.11 12.6 2.9 6 34 450 485 448 489 0.91 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF343-207 - 640 4e-08 33.2 61.0 7 12 0.011 7.6 6.7 4.0 6 37 478 516 477 520 0.78 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF343-207 - 640 4e-08 33.2 61.0 8 12 0.0045 3.3 7.9 2.5 6 33 506 540 505 546 0.85 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF343-207 - 640 4e-08 33.2 61.0 9 12 0.0019 1.4 9.1 2.9 6 34 534 569 532 574 0.89 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF343-207 - 640 4e-08 33.2 61.0 10 12 0.0048 3.4 7.8 2.9 6 37 562 600 561 604 0.77 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF343-207 - 640 4e-08 33.2 61.0 11 12 0.00044 0.32 11.2 2.1 6 34 590 625 589 630 0.87 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF343-207 - 640 4e-08 33.2 61.0 12 12 0.025 18 5.5 0.4 6 16 618 628 616 636 0.86 Zinc ribbon domain zf-C2H2_11 PF16622.5 29 ZNF343-207 - 640 1.7e-07 30.8 82.8 1 13 0.76 5.5e+02 0.5 3.6 7 24 152 169 150 172 0.91 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF343-207 - 640 1.7e-07 30.8 82.8 2 13 0.058 42 4.0 2.1 7 26 312 331 310 332 0.94 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF343-207 - 640 1.7e-07 30.8 82.8 3 13 0.00032 0.23 11.2 1.0 7 24 340 357 338 359 0.93 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF343-207 - 640 1.7e-07 30.8 82.8 4 13 0.00013 0.096 12.5 0.3 7 23 368 384 364 386 0.95 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF343-207 - 640 1.7e-07 30.8 82.8 5 13 0.0049 3.5 7.5 0.2 7 24 396 413 392 415 0.92 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF343-207 - 640 1.7e-07 30.8 82.8 6 13 0.00025 0.18 11.6 1.4 7 26 424 443 421 444 0.95 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF343-207 - 640 1.7e-07 30.8 82.8 7 13 0.0059 4.3 7.2 0.1 7 23 452 468 449 471 0.86 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF343-207 - 640 1.7e-07 30.8 82.8 8 13 0.069 50 3.8 0.2 7 14 480 487 474 496 0.83 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF343-207 - 640 1.7e-07 30.8 82.8 9 13 0.25 1.8e+02 2.0 0.2 7 15 508 516 506 525 0.85 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF343-207 - 640 1.7e-07 30.8 82.8 10 13 0.024 17 5.2 0.8 7 24 536 553 534 555 0.92 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF343-207 - 640 1.7e-07 30.8 82.8 11 13 0.081 58 3.6 0.2 7 14 564 571 558 580 0.84 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF343-207 - 640 1.7e-07 30.8 82.8 12 13 0.12 88 3.0 0.3 7 15 592 600 590 609 0.86 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF343-207 - 640 1.7e-07 30.8 82.8 13 13 0.0015 1.1 9.1 1.0 7 24 620 637 618 639 0.93 zinc-finger C2H2-type ADK_lid PF05191.14 36 ZNF343-207 - 640 2.7e-07 30.5 44.2 1 10 0.00011 0.08 12.9 0.2 3 33 311 349 310 351 0.79 Adenylate kinase, active site lid ADK_lid PF05191.14 36 ZNF343-207 - 640 2.7e-07 30.5 44.2 2 10 0.00072 0.52 10.3 1.1 3 30 339 374 337 379 0.79 Adenylate kinase, active site lid ADK_lid PF05191.14 36 ZNF343-207 - 640 2.7e-07 30.5 44.2 3 10 0.04 29 4.8 0.2 3 12 395 404 394 421 0.83 Adenylate kinase, active site lid ADK_lid PF05191.14 36 ZNF343-207 - 640 2.7e-07 30.5 44.2 4 10 0.0004 0.29 11.2 0.8 3 36 423 464 422 464 0.79 Adenylate kinase, active site lid ADK_lid PF05191.14 36 ZNF343-207 - 640 2.7e-07 30.5 44.2 5 10 0.12 85 3.3 7.0 3 28 451 484 450 518 0.68 Adenylate kinase, active site lid ADK_lid PF05191.14 36 ZNF343-207 - 640 2.7e-07 30.5 44.2 6 10 0.071 51 4.0 1.4 3 14 507 518 506 542 0.60 Adenylate kinase, active site lid ADK_lid PF05191.14 36 ZNF343-207 - 640 2.7e-07 30.5 44.2 7 10 0.063 45 4.1 2.2 3 28 535 568 534 574 0.68 Adenylate kinase, active site lid ADK_lid PF05191.14 36 ZNF343-207 - 640 2.7e-07 30.5 44.2 8 10 0.026 19 5.3 2.9 3 29 563 597 562 603 0.78 Adenylate kinase, active site lid ADK_lid PF05191.14 36 ZNF343-207 - 640 2.7e-07 30.5 44.2 9 10 0.011 7.6 6.6 1.9 3 28 591 624 589 625 0.73 Adenylate kinase, active site lid ADK_lid PF05191.14 36 ZNF343-207 - 640 2.7e-07 30.5 44.2 10 10 0.037 27 4.9 0.3 3 14 619 630 618 637 0.79 Adenylate kinase, active site lid zinc_ribbon_15 PF17032.5 86 ZNF343-207 - 640 8.4e-07 29.7 43.5 1 9 3.4 2.5e+03 -0.7 0.0 2 15 151 164 130 175 0.62 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF343-207 - 640 8.4e-07 29.7 43.5 2 9 0.00091 0.65 10.8 0.8 35 79 307 351 282 357 0.82 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF343-207 - 640 8.4e-07 29.7 43.5 3 9 0.0029 2 9.2 4.3 30 77 330 377 311 380 0.81 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF343-207 - 640 8.4e-07 29.7 43.5 4 9 0.0015 1.1 10.1 1.5 35 81 363 409 357 412 0.83 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF343-207 - 640 8.4e-07 29.7 43.5 5 9 0.0033 2.4 9.0 1.5 31 77 388 433 380 437 0.83 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF343-207 - 640 8.4e-07 29.7 43.5 6 9 0.0032 2.3 9.0 0.9 25 78 409 462 408 465 0.81 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF343-207 - 640 8.4e-07 29.7 43.5 7 9 0.0024 1.8 9.4 3.3 34 75 446 487 440 520 0.89 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF343-207 - 640 8.4e-07 29.7 43.5 8 9 0.0087 6.3 7.6 5.6 32 75 528 571 508 577 0.86 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF343-207 - 640 8.4e-07 29.7 43.5 9 9 0.0021 1.5 9.6 0.3 35 78 587 630 576 633 0.83 zinc-ribbon family # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF343-207.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF343-207.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF343-207.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF343-207.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF343-207.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:04:46 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-C2H2 PF00096.26 23 ZNF343-208 - 509 4.4e-74 241.0 98.0 1 13 3.1 2e+03 -0.4 1.0 1 19 19 37 19 39 0.78 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF343-208 - 509 4.4e-74 241.0 98.0 2 13 6.5e-09 4.2e-06 26.9 2.2 1 23 179 201 179 201 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF343-208 - 509 4.4e-74 241.0 98.0 3 13 7.9e-10 5e-07 29.8 1.1 1 23 207 229 207 229 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF343-208 - 509 4.4e-74 241.0 98.0 4 13 0.00011 0.071 13.6 0.8 1 20 235 254 235 257 0.89 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF343-208 - 509 4.4e-74 241.0 98.0 5 13 3.3e-08 2.1e-05 24.7 0.8 1 23 263 285 263 285 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF343-208 - 509 4.4e-74 241.0 98.0 6 13 1.4e-08 9e-06 25.9 2.8 1 23 291 313 291 313 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF343-208 - 509 4.4e-74 241.0 98.0 7 13 2.3e-09 1.5e-06 28.4 0.5 1 23 319 341 319 341 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF343-208 - 509 4.4e-74 241.0 98.0 8 13 2.5e-07 0.00016 21.9 1.0 1 23 347 369 347 369 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF343-208 - 509 4.4e-74 241.0 98.0 9 13 1.7e-09 1.1e-06 28.8 0.3 1 23 375 397 375 397 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF343-208 - 509 4.4e-74 241.0 98.0 10 13 9.8e-09 6.3e-06 26.4 1.7 1 23 403 425 403 425 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF343-208 - 509 4.4e-74 241.0 98.0 11 13 3.2e-07 0.0002 21.6 1.1 1 23 431 453 431 453 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF343-208 - 509 4.4e-74 241.0 98.0 12 13 2.1e-09 1.4e-06 28.4 0.5 1 23 459 481 459 481 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF343-208 - 509 4.4e-74 241.0 98.0 13 13 1.9e-09 1.2e-06 28.6 2.3 1 23 487 509 487 509 0.99 Zinc finger, C2H2 type zf-H2C2_2 PF13465.6 26 ZNF343-208 - 509 3.9e-63 207.2 86.6 1 14 0.065 42 4.8 1.1 13 25 15 29 13 30 0.78 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF343-208 - 509 3.9e-63 207.2 86.6 2 14 0.0048 3.1 8.4 0.1 11 25 175 189 171 190 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF343-208 - 509 3.9e-63 207.2 86.6 3 14 1.3e-07 8.3e-05 22.8 0.5 2 25 194 217 193 218 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF343-208 - 509 3.9e-63 207.2 86.6 4 14 8.1e-09 5.2e-06 26.6 0.7 1 25 221 245 221 246 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF343-208 - 509 3.9e-63 207.2 86.6 5 14 5e-08 3.2e-05 24.2 0.1 2 25 250 273 249 274 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF343-208 - 509 3.9e-63 207.2 86.6 6 14 8.1e-08 5.2e-05 23.5 1.6 3 24 279 300 277 303 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF343-208 - 509 3.9e-63 207.2 86.6 7 14 2.8e-09 1.8e-06 28.1 0.3 2 25 306 329 305 330 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF343-208 - 509 3.9e-63 207.2 86.6 8 14 1.8e-06 0.0012 19.2 0.9 2 24 334 356 333 361 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF343-208 - 509 3.9e-63 207.2 86.6 9 14 3e-07 0.00019 21.7 0.1 5 25 365 385 362 386 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF343-208 - 509 3.9e-63 207.2 86.6 10 14 1.9e-06 0.0012 19.2 0.7 5 25 393 413 390 414 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF343-208 - 509 3.9e-63 207.2 86.6 11 14 8.7e-07 0.00056 20.2 1.3 1 24 417 440 417 446 0.80 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF343-208 - 509 3.9e-63 207.2 86.6 12 14 2.5e-08 1.6e-05 25.1 0.3 4 25 448 469 445 470 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF343-208 - 509 3.9e-63 207.2 86.6 13 14 1.9e-06 0.0012 19.2 1.4 5 26 477 498 474 498 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF343-208 - 509 3.9e-63 207.2 86.6 14 14 1.1 7.1e+02 0.9 0.5 1 9 501 509 501 509 0.93 Zinc-finger double domain zf-C2H2_4 PF13894.6 24 ZNF343-208 - 509 3.4e-52 170.6 93.5 1 13 0.0068 4.4 8.4 1.2 1 21 19 39 19 41 0.90 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF343-208 - 509 3.4e-52 170.6 93.5 2 13 2.4e-06 0.0015 19.2 1.1 1 23 179 201 179 202 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF343-208 - 509 3.4e-52 170.6 93.5 3 13 4.2e-07 0.00027 21.5 0.9 1 23 207 229 207 230 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF343-208 - 509 3.4e-52 170.6 93.5 4 13 1.2e-05 0.0075 17.0 0.9 1 23 235 257 235 258 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF343-208 - 509 3.4e-52 170.6 93.5 5 13 1.3e-06 0.00084 20.0 0.8 1 23 263 285 263 286 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF343-208 - 509 3.4e-52 170.6 93.5 6 13 5.3e-06 0.0034 18.1 2.4 1 23 291 313 291 314 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF343-208 - 509 3.4e-52 170.6 93.5 7 13 2.9e-06 0.0018 18.9 0.3 1 23 319 341 319 342 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF343-208 - 509 3.4e-52 170.6 93.5 8 13 7.9e-06 0.0051 17.6 0.9 1 23 347 369 347 370 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF343-208 - 509 3.4e-52 170.6 93.5 9 13 4.8e-06 0.0031 18.2 0.3 1 23 375 397 375 398 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF343-208 - 509 3.4e-52 170.6 93.5 10 13 4.2e-06 0.0027 18.4 1.1 1 23 403 425 403 426 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF343-208 - 509 3.4e-52 170.6 93.5 11 13 2.5e-06 0.0016 19.1 0.9 1 23 431 453 431 454 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF343-208 - 509 3.4e-52 170.6 93.5 12 13 2.1e-06 0.0014 19.3 0.6 1 23 459 481 459 482 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF343-208 - 509 3.4e-52 170.6 93.5 13 13 1.1e-05 0.0072 17.1 1.5 1 23 487 509 487 509 0.95 C2H2-type zinc finger zf-C2H2_jaz PF12171.8 27 ZNF343-208 - 509 2.2e-18 66.0 31.4 1 11 0.0089 5.7 7.3 0.0 2 20 179 197 178 197 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF343-208 - 509 2.2e-18 66.0 31.4 2 11 0.01 6.5 7.2 0.1 2 24 207 229 206 230 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF343-208 - 509 2.2e-18 66.0 31.4 3 11 0.00076 0.49 10.8 0.1 2 24 263 285 262 286 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF343-208 - 509 2.2e-18 66.0 31.4 4 11 0.015 9.4 6.7 0.2 2 22 291 311 290 311 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF343-208 - 509 2.2e-18 66.0 31.4 5 11 0.012 7.4 7.0 0.0 2 24 319 341 318 342 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF343-208 - 509 2.2e-18 66.0 31.4 6 11 0.14 93 3.5 0.1 2 24 347 369 346 370 0.91 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF343-208 - 509 2.2e-18 66.0 31.4 7 11 0.0061 3.9 7.9 0.0 2 24 375 397 374 402 0.91 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF343-208 - 509 2.2e-18 66.0 31.4 8 11 0.012 7.9 6.9 0.2 2 24 403 425 402 426 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF343-208 - 509 2.2e-18 66.0 31.4 9 11 0.021 14 6.1 0.1 2 24 431 453 430 454 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF343-208 - 509 2.2e-18 66.0 31.4 10 11 0.0024 1.6 9.1 0.1 2 24 459 481 458 486 0.91 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF343-208 - 509 2.2e-18 66.0 31.4 11 11 0.0069 4.4 7.7 0.2 2 24 487 509 486 509 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_11 PF16622.5 29 ZNF343-208 - 509 6.5e-09 35.4 82.8 1 13 0.66 4.2e+02 0.8 3.6 7 24 21 38 19 41 0.91 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF343-208 - 509 6.5e-09 35.4 82.8 2 13 0.05 32 4.4 2.1 7 26 181 200 179 201 0.94 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF343-208 - 509 6.5e-09 35.4 82.8 3 13 0.00028 0.18 11.6 1.0 7 24 209 226 207 228 0.93 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF343-208 - 509 6.5e-09 35.4 82.8 4 13 0.00012 0.074 12.8 0.3 7 23 237 253 233 255 0.95 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF343-208 - 509 6.5e-09 35.4 82.8 5 13 0.0042 2.7 7.8 0.2 7 24 265 282 261 284 0.92 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF343-208 - 509 6.5e-09 35.4 82.8 6 13 0.00021 0.14 12.0 1.4 7 26 293 312 290 313 0.95 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF343-208 - 509 6.5e-09 35.4 82.8 7 13 0.0051 3.3 7.6 0.1 7 23 321 337 318 340 0.86 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF343-208 - 509 6.5e-09 35.4 82.8 8 13 0.06 39 4.1 0.2 7 14 349 356 343 365 0.83 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF343-208 - 509 6.5e-09 35.4 82.8 9 13 0.22 1.4e+02 2.4 0.2 7 15 377 385 375 394 0.85 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF343-208 - 509 6.5e-09 35.4 82.8 10 13 0.021 13 5.6 0.8 7 24 405 422 403 424 0.92 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF343-208 - 509 6.5e-09 35.4 82.8 11 13 0.07 45 3.9 0.2 7 14 433 440 427 449 0.84 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF343-208 - 509 6.5e-09 35.4 82.8 12 13 0.11 68 3.3 0.3 7 15 461 469 459 478 0.86 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF343-208 - 509 6.5e-09 35.4 82.8 13 13 0.0013 0.81 9.5 1.0 7 24 489 506 487 508 0.93 zinc-finger C2H2-type Zn-ribbon_8 PF09723.10 40 ZNF343-208 - 509 1.3e-08 34.8 62.2 1 12 5 3.2e+03 -1.7 0.3 6 11 19 24 15 36 0.76 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF343-208 - 509 1.3e-08 34.8 62.2 2 12 0.00052 0.33 11.1 2.0 6 33 179 213 178 214 0.81 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF343-208 - 509 1.3e-08 34.8 62.2 3 12 5.5e-05 0.035 14.2 2.8 6 36 207 244 206 248 0.88 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF343-208 - 509 1.3e-08 34.8 62.2 4 12 0.0033 2.1 8.5 4.2 6 34 263 298 262 301 0.86 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF343-208 - 509 1.3e-08 34.8 62.2 5 12 0.0007 0.45 10.7 3.1 6 34 291 326 290 330 0.91 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF343-208 - 509 1.3e-08 34.8 62.2 6 12 0.00011 0.072 13.2 2.8 6 34 319 354 317 360 0.90 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF343-208 - 509 1.3e-08 34.8 62.2 7 12 0.013 8.2 6.6 4.5 6 37 347 385 345 388 0.78 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF343-208 - 509 1.3e-08 34.8 62.2 8 12 0.0075 4.8 7.4 2.9 6 33 375 409 374 410 0.86 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF343-208 - 509 1.3e-08 34.8 62.2 9 12 0.0017 1.1 9.5 2.9 6 34 403 438 402 443 0.89 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF343-208 - 509 1.3e-08 34.8 62.2 10 12 0.005 3.2 7.9 3.2 6 37 431 469 430 473 0.77 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF343-208 - 509 1.3e-08 34.8 62.2 11 12 0.00071 0.46 10.7 3.1 6 34 459 494 457 499 0.87 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF343-208 - 509 1.3e-08 34.8 62.2 12 12 0.023 15 5.8 0.4 6 16 487 497 485 505 0.86 Zinc ribbon domain ADK_lid PF05191.14 36 ZNF343-208 - 509 1.5e-07 31.3 46.6 1 11 0.00011 0.068 13.2 0.4 3 33 180 218 179 220 0.79 Adenylate kinase, active site lid ADK_lid PF05191.14 36 ZNF343-208 - 509 1.5e-07 31.3 46.6 2 11 0.00066 0.42 10.6 1.2 3 30 208 243 207 248 0.78 Adenylate kinase, active site lid ADK_lid PF05191.14 36 ZNF343-208 - 509 1.5e-07 31.3 46.6 3 11 0.037 23 5.0 0.2 3 12 264 273 263 289 0.84 Adenylate kinase, active site lid ADK_lid PF05191.14 36 ZNF343-208 - 509 1.5e-07 31.3 46.6 4 11 0.00039 0.25 11.3 1.0 3 36 292 333 291 333 0.79 Adenylate kinase, active site lid ADK_lid PF05191.14 36 ZNF343-208 - 509 1.5e-07 31.3 46.6 5 11 0.004 2.6 8.1 2.0 3 28 320 353 318 356 0.69 Adenylate kinase, active site lid ADK_lid PF05191.14 36 ZNF343-208 - 509 1.5e-07 31.3 46.6 6 11 0.029 18 5.4 2.8 3 29 348 382 347 388 0.80 Adenylate kinase, active site lid ADK_lid PF05191.14 36 ZNF343-208 - 509 1.5e-07 31.3 46.6 7 11 0.087 56 3.8 1.5 3 14 376 387 375 408 0.64 Adenylate kinase, active site lid ADK_lid PF05191.14 36 ZNF343-208 - 509 1.5e-07 31.3 46.6 8 11 0.069 44 4.2 2.6 3 28 404 437 403 444 0.69 Adenylate kinase, active site lid ADK_lid PF05191.14 36 ZNF343-208 - 509 1.5e-07 31.3 46.6 9 11 0.033 21 5.2 3.5 3 29 432 466 430 472 0.79 Adenylate kinase, active site lid ADK_lid PF05191.14 36 ZNF343-208 - 509 1.5e-07 31.3 46.6 10 11 0.03 19 5.3 0.2 3 14 460 471 459 481 0.84 Adenylate kinase, active site lid ADK_lid PF05191.14 36 ZNF343-208 - 509 1.5e-07 31.3 46.6 11 11 0.034 22 5.2 0.4 3 14 488 499 487 506 0.79 Adenylate kinase, active site lid XPA_N PF01286.18 32 ZNF343-208 - 509 1.5e-07 31.4 40.0 1 12 0.088 57 3.9 0.0 3 13 180 190 178 198 0.87 XPA protein N-terminal XPA_N PF01286.18 32 ZNF343-208 - 509 1.5e-07 31.4 40.0 2 12 0.11 69 3.6 0.0 3 12 208 217 206 225 0.84 XPA protein N-terminal XPA_N PF01286.18 32 ZNF343-208 - 509 1.5e-07 31.4 40.0 3 12 0.089 57 3.9 0.1 4 12 237 245 234 251 0.88 XPA protein N-terminal XPA_N PF01286.18 32 ZNF343-208 - 509 1.5e-07 31.4 40.0 4 12 0.16 1e+02 3.1 0.1 3 12 264 273 262 276 0.87 XPA protein N-terminal XPA_N PF01286.18 32 ZNF343-208 - 509 1.5e-07 31.4 40.0 5 12 0.0067 4.3 7.5 0.4 3 13 292 302 290 309 0.84 XPA protein N-terminal XPA_N PF01286.18 32 ZNF343-208 - 509 1.5e-07 31.4 40.0 6 12 0.067 43 4.3 0.0 3 12 320 329 318 337 0.85 XPA protein N-terminal XPA_N PF01286.18 32 ZNF343-208 - 509 1.5e-07 31.4 40.0 7 12 0.018 11 6.1 0.3 3 13 348 358 346 362 0.91 XPA protein N-terminal XPA_N PF01286.18 32 ZNF343-208 - 509 1.5e-07 31.4 40.0 8 12 0.23 1.5e+02 2.5 0.0 3 12 376 385 374 393 0.80 XPA protein N-terminal XPA_N PF01286.18 32 ZNF343-208 - 509 1.5e-07 31.4 40.0 9 12 0.23 1.4e+02 2.6 0.3 24 29 404 409 401 415 0.65 XPA protein N-terminal XPA_N PF01286.18 32 ZNF343-208 - 509 1.5e-07 31.4 40.0 10 12 0.02 13 5.9 0.4 3 13 432 442 430 446 0.91 XPA protein N-terminal XPA_N PF01286.18 32 ZNF343-208 - 509 1.5e-07 31.4 40.0 11 12 0.1 66 3.7 0.0 3 12 460 469 458 477 0.80 XPA protein N-terminal XPA_N PF01286.18 32 ZNF343-208 - 509 1.5e-07 31.4 40.0 12 12 0.096 62 3.8 0.0 3 12 488 497 487 505 0.85 XPA protein N-terminal DZR PF12773.7 49 ZNF343-208 - 509 5.8e-07 29.4 48.7 1 2 6.4 4.1e+03 -2.1 0.4 29 34 19 24 12 31 0.67 Double zinc ribbon DZR PF12773.7 49 ZNF343-208 - 509 5.8e-07 29.4 48.7 2 2 0.00011 0.072 13.1 3.0 13 49 179 241 169 248 0.71 Double zinc ribbon # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF343-208.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF343-208.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF343-208.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF343-208.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF343-208.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:04:47 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZNF347-201 - 839 1e-150 484.1 135.3 1 20 1.7e-09 9.5e-07 29.0 4.0 1 25 275 299 275 300 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF347-201 - 839 1e-150 484.1 135.3 2 20 9.1e-09 5e-06 26.7 0.5 1 25 303 327 303 328 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF347-201 - 839 1e-150 484.1 135.3 3 20 5e-11 2.7e-08 33.8 0.5 2 25 332 355 331 356 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF347-201 - 839 1e-150 484.1 135.3 4 20 9.5e-11 5.2e-08 33.0 1.4 1 24 359 382 359 383 0.97 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF347-201 - 839 1e-150 484.1 135.3 5 20 7.3e-09 3.9e-06 27.0 0.2 4 25 390 411 387 412 0.90 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF347-201 - 839 1e-150 484.1 135.3 6 20 1.4e-09 7.8e-07 29.2 0.8 1 24 415 438 415 439 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF347-201 - 839 1e-150 484.1 135.3 7 20 1.6e-08 8.9e-06 25.9 0.6 5 25 447 467 443 468 0.89 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF347-201 - 839 1e-150 484.1 135.3 8 20 5.1e-10 2.8e-07 30.7 1.2 1 24 471 494 471 495 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF347-201 - 839 1e-150 484.1 135.3 9 20 9.1e-10 4.9e-07 29.9 0.4 1 25 499 523 499 524 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF347-201 - 839 1e-150 484.1 135.3 10 20 7.1e-09 3.9e-06 27.0 0.4 1 25 527 551 527 551 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF347-201 - 839 1e-150 484.1 135.3 11 20 1.9e-09 1e-06 28.9 0.4 2 25 556 579 555 580 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF347-201 - 839 1e-150 484.1 135.3 12 20 6.4e-10 3.5e-07 30.4 2.9 1 26 583 608 583 608 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF347-201 - 839 1e-150 484.1 135.3 13 20 9.5e-08 5.2e-05 23.5 0.1 2 25 612 635 611 636 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF347-201 - 839 1e-150 484.1 135.3 14 20 9.1e-10 4.9e-07 29.9 0.4 1 25 639 663 639 664 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF347-201 - 839 1e-150 484.1 135.3 15 20 9e-11 4.9e-08 33.1 0.8 1 25 667 691 667 692 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF347-201 - 839 1e-150 484.1 135.3 16 20 9.2e-12 5e-09 36.2 0.4 2 25 696 719 695 719 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF347-201 - 839 1e-150 484.1 135.3 17 20 4.4e-10 2.4e-07 30.9 0.6 1 25 723 747 723 748 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF347-201 - 839 1e-150 484.1 135.3 18 20 7e-11 3.8e-08 33.4 0.9 1 25 751 775 751 776 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF347-201 - 839 1e-150 484.1 135.3 19 20 2.6e-07 0.00014 22.1 0.3 2 17 780 795 779 797 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF347-201 - 839 1e-150 484.1 135.3 20 20 0.00043 0.23 11.9 0.1 1 17 804 820 804 822 0.91 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZNF347-201 - 839 1.1e-118 381.5 144.4 1 20 1.9e-06 0.001 19.4 0.3 5 23 265 283 263 283 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF347-201 - 839 1.1e-118 381.5 144.4 2 20 4.4e-08 2.4e-05 24.5 1.0 1 23 289 311 289 311 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF347-201 - 839 1.1e-118 381.5 144.4 3 20 3.4e-09 1.8e-06 28.1 1.0 1 23 317 339 317 339 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF347-201 - 839 1.1e-118 381.5 144.4 4 20 1e-08 5.7e-06 26.5 1.3 1 23 345 367 345 367 0.95 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF347-201 - 839 1.1e-118 381.5 144.4 5 20 4e-08 2.2e-05 24.7 0.1 1 23 373 395 373 395 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF347-201 - 839 1.1e-118 381.5 144.4 6 20 2.2e-09 1.2e-06 28.6 1.8 1 23 401 423 401 423 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF347-201 - 839 1.1e-118 381.5 144.4 7 20 6.3e-06 0.0034 17.8 0.0 1 23 429 451 429 451 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF347-201 - 839 1.1e-118 381.5 144.4 8 20 2.4e-09 1.3e-06 28.5 3.7 1 23 457 479 457 479 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF347-201 - 839 1.1e-118 381.5 144.4 9 20 7.9e-08 4.3e-05 23.7 1.0 1 23 485 507 485 507 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF347-201 - 839 1.1e-118 381.5 144.4 10 20 1e-09 5.6e-07 29.7 1.5 1 23 513 535 513 535 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF347-201 - 839 1.1e-118 381.5 144.4 11 20 1.9e-06 0.0011 19.4 0.3 1 23 541 563 541 563 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF347-201 - 839 1.1e-118 381.5 144.4 12 20 1.3e-08 7.3e-06 26.2 1.2 1 23 569 591 569 591 0.95 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF347-201 - 839 1.1e-118 381.5 144.4 13 20 1.1e-08 6e-06 26.4 3.4 1 23 597 619 597 619 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF347-201 - 839 1.1e-118 381.5 144.4 14 20 0.03 16 6.2 0.2 7 23 631 647 631 647 0.94 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF347-201 - 839 1.1e-118 381.5 144.4 15 20 1.3e-09 6.9e-07 29.4 2.3 1 23 653 675 653 675 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF347-201 - 839 1.1e-118 381.5 144.4 16 20 5.4e-09 2.9e-06 27.4 0.6 1 23 681 703 681 703 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF347-201 - 839 1.1e-118 381.5 144.4 17 20 2.5e-07 0.00013 22.2 0.2 1 23 709 731 709 731 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF347-201 - 839 1.1e-118 381.5 144.4 18 20 1.3e-08 7.3e-06 26.2 1.2 1 23 737 759 737 759 0.95 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF347-201 - 839 1.1e-118 381.5 144.4 19 20 5.4e-09 2.9e-06 27.4 0.7 1 23 765 787 765 787 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF347-201 - 839 1.1e-118 381.5 144.4 20 20 0.00051 0.28 11.7 0.2 5 23 794 812 792 812 0.94 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZNF347-201 - 839 1.1e-54 178.4 136.6 1 21 6.2 3.3e+03 -0.6 0.0 1 15 205 219 205 221 0.84 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF347-201 - 839 1.1e-54 178.4 136.6 2 21 0.019 10 7.3 0.3 5 23 265 283 261 284 0.90 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF347-201 - 839 1.1e-54 178.4 136.6 3 21 0.00013 0.071 14.0 0.6 1 23 289 311 289 312 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF347-201 - 839 1.1e-54 178.4 136.6 4 21 1.7e-06 0.00094 19.8 0.9 1 23 317 339 317 340 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF347-201 - 839 1.1e-54 178.4 136.6 5 21 5e-05 0.027 15.3 0.9 1 23 345 367 345 368 0.90 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF347-201 - 839 1.1e-54 178.4 136.6 6 21 0.00026 0.14 13.1 0.2 1 23 373 395 373 396 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF347-201 - 839 1.1e-54 178.4 136.6 7 21 3.9e-06 0.0021 18.7 1.3 1 23 401 423 401 424 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF347-201 - 839 1.1e-54 178.4 136.6 8 21 0.0025 1.4 10.0 0.1 1 23 429 451 429 452 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF347-201 - 839 1.1e-54 178.4 136.6 9 21 4.4e-05 0.024 15.5 2.8 1 23 457 479 457 480 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF347-201 - 839 1.1e-54 178.4 136.6 10 21 0.0012 0.66 11.0 0.7 1 23 485 507 485 508 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF347-201 - 839 1.1e-54 178.4 136.6 11 21 1.8e-05 0.0096 16.7 1.0 1 23 513 535 513 536 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF347-201 - 839 1.1e-54 178.4 136.6 12 21 0.00051 0.28 12.1 0.3 1 23 541 563 541 564 0.91 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF347-201 - 839 1.1e-54 178.4 136.6 13 21 5.7e-05 0.031 15.1 0.8 1 23 569 591 569 592 0.89 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF347-201 - 839 1.1e-54 178.4 136.6 14 21 8.9e-05 0.048 14.5 2.3 1 23 597 619 597 620 0.91 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF347-201 - 839 1.1e-54 178.4 136.6 15 21 6.3 3.4e+03 -0.6 0.2 7 23 631 647 631 648 0.85 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF347-201 - 839 1.1e-54 178.4 136.6 16 21 1.4e-05 0.0076 17.0 1.7 1 23 653 675 653 676 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF347-201 - 839 1.1e-54 178.4 136.6 17 21 2.9e-05 0.016 16.0 0.6 1 23 681 703 681 704 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF347-201 - 839 1.1e-54 178.4 136.6 18 21 0.0001 0.056 14.3 0.3 1 23 709 731 709 732 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF347-201 - 839 1.1e-54 178.4 136.6 19 21 5.7e-05 0.031 15.1 0.8 1 23 737 759 737 760 0.89 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF347-201 - 839 1.1e-54 178.4 136.6 20 21 2.7e-05 0.015 16.1 0.6 1 23 765 787 765 788 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF347-201 - 839 1.1e-54 178.4 136.6 21 21 0.031 17 6.6 0.1 5 23 794 812 792 813 0.87 C2H2-type zinc finger zf-C2H2_11 PF16622.5 29 ZNF347-201 - 839 1.9e-27 94.7 76.9 1 18 0.17 92 2.9 0.1 5 23 289 307 286 311 0.74 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF347-201 - 839 1.9e-27 94.7 76.9 2 18 0.0093 5.1 7.0 1.0 5 26 317 338 315 339 0.91 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF347-201 - 839 1.9e-27 94.7 76.9 3 18 0.0005 0.27 11.0 0.1 5 26 345 366 342 367 0.92 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF347-201 - 839 1.9e-27 94.7 76.9 4 18 0.094 51 3.7 0.0 5 23 373 391 370 393 0.84 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF347-201 - 839 1.9e-27 94.7 76.9 5 18 0.0062 3.3 7.5 0.0 5 26 401 422 398 423 0.91 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF347-201 - 839 1.9e-27 94.7 76.9 6 18 0.0041 2.2 8.1 0.0 5 26 429 450 426 451 0.93 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF347-201 - 839 1.9e-27 94.7 76.9 7 18 0.05 27 4.6 0.7 5 26 457 478 454 479 0.89 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF347-201 - 839 1.9e-27 94.7 76.9 8 18 0.11 59 3.5 0.1 5 25 485 505 482 507 0.81 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF347-201 - 839 1.9e-27 94.7 76.9 9 18 0.0089 4.8 7.0 0.1 5 26 513 534 510 535 0.90 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF347-201 - 839 1.9e-27 94.7 76.9 10 18 0.013 7 6.5 0.3 7 26 543 562 541 563 0.90 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF347-201 - 839 1.9e-27 94.7 76.9 11 18 0.00024 0.13 12.0 0.1 5 26 569 590 566 591 0.92 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF347-201 - 839 1.9e-27 94.7 76.9 12 18 0.0028 1.5 8.6 0.3 5 26 597 618 594 619 0.93 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF347-201 - 839 1.9e-27 94.7 76.9 13 18 0.00014 0.076 12.8 0.2 5 26 653 674 650 675 0.92 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF347-201 - 839 1.9e-27 94.7 76.9 14 18 0.00039 0.21 11.4 0.4 5 25 681 701 679 703 0.91 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF347-201 - 839 1.9e-27 94.7 76.9 15 18 0.0052 2.8 7.8 0.2 6 26 710 730 707 731 0.90 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF347-201 - 839 1.9e-27 94.7 76.9 16 18 0.00029 0.16 11.8 0.2 5 26 737 758 735 759 0.93 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF347-201 - 839 1.9e-27 94.7 76.9 17 18 0.00041 0.22 11.3 0.1 5 26 765 786 762 787 0.93 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF347-201 - 839 1.9e-27 94.7 76.9 18 18 0.26 1.4e+02 2.3 0.2 9 26 794 811 792 812 0.90 zinc-finger C2H2-type KRAB PF01352.27 42 ZNF347-201 - 839 5.8e-27 93.1 0.1 1 1 2.4e-29 1.3e-26 92.0 0.1 2 42 8 48 7 48 0.98 KRAB box Zn-ribbon_8 PF09723.10 40 ZNF347-201 - 839 7e-24 83.7 95.3 1 16 0.045 25 5.1 0.2 6 16 289 299 261 308 0.69 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF347-201 - 839 7e-24 83.7 95.3 2 16 1.1e-05 0.0061 16.7 3.9 6 34 317 352 316 356 0.91 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF347-201 - 839 7e-24 83.7 95.3 3 16 2.4e-05 0.013 15.6 3.6 6 37 345 383 344 385 0.84 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF347-201 - 839 7e-24 83.7 95.3 4 16 0.0041 2.2 8.5 0.2 6 21 373 388 372 396 0.82 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF347-201 - 839 7e-24 83.7 95.3 5 16 0.00023 0.12 12.5 4.3 6 34 401 436 400 441 0.87 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF347-201 - 839 7e-24 83.7 95.3 6 16 0.0089 4.8 7.4 0.3 6 20 429 443 428 448 0.85 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF347-201 - 839 7e-24 83.7 95.3 7 16 1.6e-05 0.0087 16.2 2.5 6 36 457 494 456 497 0.89 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF347-201 - 839 7e-24 83.7 95.3 8 16 1.6e-05 0.0085 16.2 1.5 6 34 513 548 512 552 0.91 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF347-201 - 839 7e-24 83.7 95.3 9 16 0.025 13 6.0 0.2 6 20 541 555 540 560 0.84 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF347-201 - 839 7e-24 83.7 95.3 10 16 0.00013 0.069 13.3 4.3 6 34 569 604 568 607 0.87 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF347-201 - 839 7e-24 83.7 95.3 11 16 0.006 3.3 7.9 0.5 6 16 597 607 596 623 0.82 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF347-201 - 839 7e-24 83.7 95.3 12 16 0.00019 0.1 12.7 4.2 6 35 653 689 652 692 0.82 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF347-201 - 839 7e-24 83.7 95.3 13 16 0.00011 0.062 13.4 4.0 6 34 681 716 680 722 0.89 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF347-201 - 839 7e-24 83.7 95.3 14 16 0.0023 1.2 9.3 0.2 6 21 709 724 707 731 0.85 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF347-201 - 839 7e-24 83.7 95.3 15 16 5.2e-05 0.028 14.5 3.7 6 35 737 773 736 776 0.86 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF347-201 - 839 7e-24 83.7 95.3 16 16 0.0027 1.5 9.0 0.8 6 22 765 787 764 800 0.71 Zinc ribbon domain zf-C2H2_6 PF13912.6 27 ZNF347-201 - 839 4e-18 64.9 149.8 1 18 0.0005 0.27 11.3 0.6 2 20 289 307 289 311 0.95 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF347-201 - 839 4e-18 64.9 149.8 2 18 0.00024 0.13 12.3 0.6 1 13 316 328 316 339 0.87 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF347-201 - 839 4e-18 64.9 149.8 3 18 0.0019 1.1 9.4 0.9 2 12 345 355 345 356 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF347-201 - 839 4e-18 64.9 149.8 4 18 0.0017 0.91 9.6 0.3 2 24 373 395 373 398 0.76 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF347-201 - 839 4e-18 64.9 149.8 5 18 0.0091 4.9 7.3 3.4 2 12 401 411 401 422 0.88 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF347-201 - 839 4e-18 64.9 149.8 6 18 0.0061 3.3 7.8 0.4 2 11 429 438 429 439 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF347-201 - 839 4e-18 64.9 149.8 7 18 0.00063 0.34 11.0 0.7 2 12 457 467 457 475 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF347-201 - 839 4e-18 64.9 149.8 8 18 0.00091 0.5 10.4 0.8 2 20 485 503 485 507 0.91 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF347-201 - 839 4e-18 64.9 149.8 9 18 0.0019 1.1 9.4 0.9 2 12 513 523 513 524 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF347-201 - 839 4e-18 64.9 149.8 10 18 0.00017 0.091 12.8 0.5 2 20 541 559 541 563 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF347-201 - 839 4e-18 64.9 149.8 11 18 0.016 8.6 6.5 4.2 2 12 569 579 569 590 0.89 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF347-201 - 839 4e-18 64.9 149.8 12 18 0.002 1.1 9.4 1.4 2 12 597 607 597 608 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF347-201 - 839 4e-18 64.9 149.8 13 18 0.022 12 6.1 4.8 2 12 653 663 653 674 0.85 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF347-201 - 839 4e-18 64.9 149.8 14 18 0.012 6.3 6.9 0.5 2 12 681 691 681 694 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF347-201 - 839 4e-18 64.9 149.8 15 18 0.00071 0.39 10.8 0.4 2 22 709 729 709 733 0.86 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF347-201 - 839 4e-18 64.9 149.8 16 18 0.016 8.6 6.5 4.2 2 12 737 747 737 758 0.89 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF347-201 - 839 4e-18 64.9 149.8 17 18 0.0049 2.7 8.1 0.7 2 12 765 775 765 777 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF347-201 - 839 4e-18 64.9 149.8 18 18 5.4 2.9e+03 -1.6 0.2 6 20 794 808 794 812 0.82 C2H2-type zinc finger XPA_N PF01286.18 32 ZNF347-201 - 839 7.4e-16 57.9 54.9 1 18 0.059 32 4.7 0.0 3 12 290 299 288 306 0.89 XPA protein N-terminal XPA_N PF01286.18 32 ZNF347-201 - 839 7.4e-16 57.9 54.9 2 18 0.061 33 4.6 0.1 3 16 318 332 316 335 0.74 XPA protein N-terminal XPA_N PF01286.18 32 ZNF347-201 - 839 7.4e-16 57.9 54.9 3 18 0.068 37 4.5 0.0 3 12 346 355 344 363 0.82 XPA protein N-terminal XPA_N PF01286.18 32 ZNF347-201 - 839 7.4e-16 57.9 54.9 4 18 0.045 25 5.0 0.1 3 11 374 382 372 385 0.90 XPA protein N-terminal XPA_N PF01286.18 32 ZNF347-201 - 839 7.4e-16 57.9 54.9 5 18 0.044 24 5.1 0.0 3 13 402 412 400 422 0.75 XPA protein N-terminal XPA_N PF01286.18 32 ZNF347-201 - 839 7.4e-16 57.9 54.9 6 18 0.035 19 5.4 0.1 3 12 430 439 428 440 0.89 XPA protein N-terminal XPA_N PF01286.18 32 ZNF347-201 - 839 7.4e-16 57.9 54.9 7 18 0.16 86 3.3 0.0 3 11 458 466 456 474 0.88 XPA protein N-terminal XPA_N PF01286.18 32 ZNF347-201 - 839 7.4e-16 57.9 54.9 8 18 0.034 19 5.4 0.1 3 11 486 494 484 503 0.86 XPA protein N-terminal XPA_N PF01286.18 32 ZNF347-201 - 839 7.4e-16 57.9 54.9 9 18 0.066 36 4.5 0.1 3 12 514 523 512 531 0.81 XPA protein N-terminal XPA_N PF01286.18 32 ZNF347-201 - 839 7.4e-16 57.9 54.9 10 18 0.072 39 4.4 0.0 3 12 542 551 540 555 0.89 XPA protein N-terminal XPA_N PF01286.18 32 ZNF347-201 - 839 7.4e-16 57.9 54.9 11 18 0.074 40 4.4 0.1 3 12 570 579 568 587 0.84 XPA protein N-terminal XPA_N PF01286.18 32 ZNF347-201 - 839 7.4e-16 57.9 54.9 12 18 0.0083 4.5 7.4 0.1 3 19 598 615 596 616 0.86 XPA protein N-terminal XPA_N PF01286.18 32 ZNF347-201 - 839 7.4e-16 57.9 54.9 13 18 0.074 40 4.4 0.1 3 12 654 663 652 671 0.84 XPA protein N-terminal XPA_N PF01286.18 32 ZNF347-201 - 839 7.4e-16 57.9 54.9 14 18 0.021 12 6.1 0.1 3 13 682 692 680 699 0.78 XPA protein N-terminal XPA_N PF01286.18 32 ZNF347-201 - 839 7.4e-16 57.9 54.9 15 18 0.19 1e+02 3.0 0.0 3 12 710 719 708 726 0.90 XPA protein N-terminal XPA_N PF01286.18 32 ZNF347-201 - 839 7.4e-16 57.9 54.9 16 18 0.074 40 4.4 0.1 3 12 738 747 736 755 0.84 XPA protein N-terminal XPA_N PF01286.18 32 ZNF347-201 - 839 7.4e-16 57.9 54.9 17 18 0.011 6.1 7.0 0.1 3 13 766 776 764 783 0.79 XPA protein N-terminal XPA_N PF01286.18 32 ZNF347-201 - 839 7.4e-16 57.9 54.9 18 18 2.7 1.5e+03 -0.7 0.2 6 12 794 800 793 802 0.88 XPA protein N-terminal C1_1 PF00130.22 53 ZNF347-201 - 839 3.4e-13 49.2 61.7 1 15 0.00098 0.53 10.2 0.7 1 37 279 325 279 329 0.86 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF347-201 - 839 3.4e-13 49.2 61.7 2 15 0.0083 4.5 7.2 2.2 2 37 308 353 307 357 0.78 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF347-201 - 839 3.4e-13 49.2 61.7 3 15 0.0056 3.1 7.8 1.6 6 36 340 380 334 382 0.79 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF347-201 - 839 3.4e-13 49.2 61.7 4 15 0.0016 0.86 9.5 0.5 9 37 370 409 359 413 0.83 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF347-201 - 839 3.4e-13 49.2 61.7 5 15 0.00017 0.092 12.6 0.8 2 37 419 465 419 469 0.91 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF347-201 - 839 3.4e-13 49.2 61.7 6 15 0.016 8.8 6.3 2.2 6 36 451 492 447 497 0.77 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF347-201 - 839 3.4e-13 49.2 61.7 7 15 0.0022 1.2 9.1 1.7 1 37 475 521 475 525 0.86 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF347-201 - 839 3.4e-13 49.2 61.7 8 15 0.013 7.2 6.6 1.7 1 35 503 547 503 551 0.73 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF347-201 - 839 3.4e-13 49.2 61.7 9 15 0.024 13 5.8 1.3 10 37 539 577 531 578 0.78 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF347-201 - 839 3.4e-13 49.2 61.7 10 15 0.0018 0.97 9.4 1.7 1 38 559 606 559 610 0.82 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF347-201 - 839 3.4e-13 49.2 61.7 11 15 0.089 48 3.9 0.1 9 23 594 608 586 618 0.75 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF347-201 - 839 3.4e-13 49.2 61.7 12 15 0.0013 0.71 9.8 0.7 1 37 643 689 643 698 0.84 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF347-201 - 839 3.4e-13 49.2 61.7 13 15 0.00059 0.32 10.9 0.8 2 37 700 745 699 749 0.86 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF347-201 - 839 3.4e-13 49.2 61.7 14 15 0.0044 2.4 8.1 2.4 4 37 730 773 727 777 0.81 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF347-201 - 839 3.4e-13 49.2 61.7 15 15 0.072 39 4.2 0.3 9 23 762 776 751 789 0.75 Phorbol esters/diacylglycerol binding domain (C1 domain) zf_UBZ PF18439.1 32 ZNF347-201 - 839 1.2e-12 47.2 73.2 1 19 5 2.7e+03 -2.0 0.1 8 21 266 280 266 280 0.89 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF347-201 - 839 1.2e-12 47.2 73.2 2 19 0.12 64 3.3 0.1 3 20 289 307 287 308 0.80 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF347-201 - 839 1.2e-12 47.2 73.2 3 19 0.0015 0.83 9.3 0.2 2 21 316 336 315 336 0.91 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF347-201 - 839 1.2e-12 47.2 73.2 4 19 0.048 26 4.5 0.1 3 14 345 356 343 360 0.83 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF347-201 - 839 1.2e-12 47.2 73.2 5 19 0.11 58 3.4 0.1 3 12 373 382 371 392 0.83 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF347-201 - 839 1.2e-12 47.2 73.2 6 19 0.037 20 4.9 0.1 3 15 401 413 399 419 0.82 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF347-201 - 839 1.2e-12 47.2 73.2 7 19 0.15 81 2.9 0.1 3 12 429 438 427 445 0.87 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF347-201 - 839 1.2e-12 47.2 73.2 8 19 0.075 41 3.9 0.2 3 13 457 467 455 476 0.80 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF347-201 - 839 1.2e-12 47.2 73.2 9 19 0.013 7 6.3 0.1 3 21 485 504 483 504 0.89 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF347-201 - 839 1.2e-12 47.2 73.2 10 19 0.027 14 5.3 0.2 3 16 513 527 511 532 0.78 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF347-201 - 839 1.2e-12 47.2 73.2 11 19 0.016 8.9 6.0 0.0 3 21 541 560 539 560 0.88 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF347-201 - 839 1.2e-12 47.2 73.2 12 19 0.039 21 4.8 0.1 3 15 569 581 567 587 0.83 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF347-201 - 839 1.2e-12 47.2 73.2 13 19 0.052 28 4.4 0.1 3 14 597 608 595 615 0.83 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF347-201 - 839 1.2e-12 47.2 73.2 14 19 0.039 21 4.8 0.1 3 15 653 665 651 671 0.83 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF347-201 - 839 1.2e-12 47.2 73.2 15 19 0.0042 2.3 7.9 0.1 3 20 681 699 679 700 0.84 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF347-201 - 839 1.2e-12 47.2 73.2 16 19 0.0093 5.1 6.8 0.1 3 21 709 728 707 728 0.89 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF347-201 - 839 1.2e-12 47.2 73.2 17 19 0.039 21 4.8 0.1 3 15 737 749 735 755 0.83 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF347-201 - 839 1.2e-12 47.2 73.2 18 19 0.005 2.7 7.6 0.1 3 20 765 783 763 784 0.84 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF347-201 - 839 1.2e-12 47.2 73.2 19 19 3.7 2e+03 -1.5 0.1 7 20 794 808 794 809 0.78 Ubiquitin-Binding Zinc Finger zinc_ribbon_15 PF17032.5 86 ZNF347-201 - 839 4.7e-11 43.3 74.1 1 13 0.0088 4.8 8.0 0.5 39 77 262 300 252 307 0.87 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF347-201 - 839 4.7e-11 43.3 74.1 2 13 0.00055 0.3 11.9 3.7 33 79 312 358 301 363 0.87 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF347-201 - 839 4.7e-11 43.3 74.1 3 13 0.0016 0.86 10.4 1.9 35 79 370 414 361 418 0.87 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF347-201 - 839 4.7e-11 43.3 74.1 4 13 0.00092 0.5 11.2 0.4 29 78 420 469 416 475 0.90 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF347-201 - 839 4.7e-11 43.3 74.1 5 13 0.0027 1.5 9.7 0.8 33 78 452 497 440 503 0.82 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF347-201 - 839 4.7e-11 43.3 74.1 6 13 0.0038 2.1 9.2 2.0 35 78 482 525 475 528 0.84 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF347-201 - 839 4.7e-11 43.3 74.1 7 13 0.025 13 6.6 5.9 30 74 507 549 486 556 0.75 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF347-201 - 839 4.7e-11 43.3 74.1 8 13 0.0017 0.91 10.3 1.4 34 78 565 609 553 615 0.83 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF347-201 - 839 4.7e-11 43.3 74.1 9 13 0.00093 0.5 11.1 1.8 34 78 649 693 623 698 0.86 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF347-201 - 839 4.7e-11 43.3 74.1 10 13 0.0017 0.95 10.3 1.6 36 75 679 718 669 723 0.85 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF347-201 - 839 4.7e-11 43.3 74.1 11 13 0.0026 1.4 9.7 2.0 32 79 703 750 698 757 0.86 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF347-201 - 839 4.7e-11 43.3 74.1 12 13 0.0026 1.4 9.7 2.4 33 78 732 777 723 783 0.85 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF347-201 - 839 4.7e-11 43.3 74.1 13 13 0.38 2.1e+02 2.8 0.5 35 68 762 795 757 810 0.67 zinc-ribbon family ZZ PF00569.17 45 ZNF347-201 - 839 5.3e-07 29.4 74.1 1 17 1 5.6e+02 0.5 0.2 3 12 287 296 285 303 0.75 Zinc finger, ZZ type ZZ PF00569.17 45 ZNF347-201 - 839 5.3e-07 29.4 74.1 2 17 0.041 22 4.9 0.2 3 12 315 324 313 329 0.84 Zinc finger, ZZ type ZZ PF00569.17 45 ZNF347-201 - 839 5.3e-07 29.4 74.1 3 17 0.072 39 4.2 0.2 3 12 343 352 341 359 0.82 Zinc finger, ZZ type ZZ PF00569.17 45 ZNF347-201 - 839 5.3e-07 29.4 74.1 4 17 0.027 14 5.5 0.1 3 15 371 381 369 392 0.77 Zinc finger, ZZ type ZZ PF00569.17 45 ZNF347-201 - 839 5.3e-07 29.4 74.1 5 17 0.081 44 4.0 0.2 4 12 400 408 398 414 0.82 Zinc finger, ZZ type ZZ PF00569.17 45 ZNF347-201 - 839 5.3e-07 29.4 74.1 6 17 0.023 12 5.8 0.1 3 19 427 441 425 447 0.78 Zinc finger, ZZ type ZZ PF00569.17 45 ZNF347-201 - 839 5.3e-07 29.4 74.1 7 17 0.12 68 3.4 0.3 4 12 456 464 454 471 0.83 Zinc finger, ZZ type ZZ PF00569.17 45 ZNF347-201 - 839 5.3e-07 29.4 74.1 8 17 0.028 15 5.5 0.2 3 19 483 495 481 500 0.77 Zinc finger, ZZ type ZZ PF00569.17 45 ZNF347-201 - 839 5.3e-07 29.4 74.1 9 17 0.072 39 4.2 0.2 3 12 511 520 509 526 0.82 Zinc finger, ZZ type ZZ PF00569.17 45 ZNF347-201 - 839 5.3e-07 29.4 74.1 10 17 0.12 66 3.4 0.1 5 13 541 549 538 558 0.74 Zinc finger, ZZ type ZZ PF00569.17 45 ZNF347-201 - 839 5.3e-07 29.4 74.1 11 17 0.072 39 4.2 0.2 3 12 567 576 565 582 0.82 Zinc finger, ZZ type ZZ PF00569.17 45 ZNF347-201 - 839 5.3e-07 29.4 74.1 12 17 0.059 32 4.4 0.2 3 12 595 604 593 612 0.80 Zinc finger, ZZ type ZZ PF00569.17 45 ZNF347-201 - 839 5.3e-07 29.4 74.1 13 17 0.072 39 4.2 0.2 3 12 651 660 649 666 0.82 Zinc finger, ZZ type ZZ PF00569.17 45 ZNF347-201 - 839 5.3e-07 29.4 74.1 14 17 0.086 47 3.9 0.1 3 12 679 688 678 693 0.80 Zinc finger, ZZ type ZZ PF00569.17 45 ZNF347-201 - 839 5.3e-07 29.4 74.1 15 17 0.047 25 4.8 0.1 4 15 708 719 706 724 0.78 Zinc finger, ZZ type ZZ PF00569.17 45 ZNF347-201 - 839 5.3e-07 29.4 74.1 16 17 0.051 28 4.6 0.2 3 12 735 744 733 750 0.82 Zinc finger, ZZ type ZZ PF00569.17 45 ZNF347-201 - 839 5.3e-07 29.4 74.1 17 17 0.05 27 4.7 0.2 3 12 763 772 761 777 0.81 Zinc finger, ZZ type # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF347-201.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF347-201.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF347-201.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF347-201.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF347-201.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:04:47 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZNF347-202 - 840 1.1e-150 484.1 135.3 1 20 1.7e-09 9.5e-07 29.0 4.0 1 25 276 300 276 301 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF347-202 - 840 1.1e-150 484.1 135.3 2 20 9.2e-09 5e-06 26.7 0.5 1 25 304 328 304 329 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF347-202 - 840 1.1e-150 484.1 135.3 3 20 5.1e-11 2.7e-08 33.8 0.5 2 25 333 356 332 357 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF347-202 - 840 1.1e-150 484.1 135.3 4 20 9.5e-11 5.2e-08 33.0 1.4 1 24 360 383 360 384 0.97 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF347-202 - 840 1.1e-150 484.1 135.3 5 20 7.3e-09 4e-06 27.0 0.2 4 25 391 412 388 413 0.90 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF347-202 - 840 1.1e-150 484.1 135.3 6 20 1.4e-09 7.8e-07 29.2 0.8 1 24 416 439 416 440 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF347-202 - 840 1.1e-150 484.1 135.3 7 20 1.6e-08 8.9e-06 25.9 0.6 5 25 448 468 444 469 0.89 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF347-202 - 840 1.1e-150 484.1 135.3 8 20 5.1e-10 2.8e-07 30.7 1.2 1 24 472 495 472 496 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF347-202 - 840 1.1e-150 484.1 135.3 9 20 9.1e-10 4.9e-07 29.9 0.4 1 25 500 524 500 525 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF347-202 - 840 1.1e-150 484.1 135.3 10 20 7.2e-09 3.9e-06 27.0 0.4 1 25 528 552 528 552 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF347-202 - 840 1.1e-150 484.1 135.3 11 20 1.9e-09 1e-06 28.9 0.4 2 25 557 580 556 581 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF347-202 - 840 1.1e-150 484.1 135.3 12 20 6.4e-10 3.5e-07 30.4 2.9 1 26 584 609 584 609 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF347-202 - 840 1.1e-150 484.1 135.3 13 20 9.5e-08 5.2e-05 23.5 0.1 2 25 613 636 612 637 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF347-202 - 840 1.1e-150 484.1 135.3 14 20 9.1e-10 4.9e-07 29.9 0.4 1 25 640 664 640 665 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF347-202 - 840 1.1e-150 484.1 135.3 15 20 9e-11 4.9e-08 33.1 0.8 1 25 668 692 668 693 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF347-202 - 840 1.1e-150 484.1 135.3 16 20 9.2e-12 5e-09 36.2 0.4 2 25 697 720 696 720 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF347-202 - 840 1.1e-150 484.1 135.3 17 20 4.4e-10 2.4e-07 30.9 0.6 1 25 724 748 724 749 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF347-202 - 840 1.1e-150 484.1 135.3 18 20 7e-11 3.8e-08 33.4 0.9 1 25 752 776 752 777 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF347-202 - 840 1.1e-150 484.1 135.3 19 20 2.6e-07 0.00014 22.1 0.3 2 17 781 796 780 798 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF347-202 - 840 1.1e-150 484.1 135.3 20 20 0.00043 0.24 11.9 0.1 1 17 805 821 805 823 0.91 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZNF347-202 - 840 1.1e-118 381.5 144.4 1 20 1.9e-06 0.001 19.4 0.3 5 23 266 284 264 284 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF347-202 - 840 1.1e-118 381.5 144.4 2 20 4.4e-08 2.4e-05 24.5 1.0 1 23 290 312 290 312 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF347-202 - 840 1.1e-118 381.5 144.4 3 20 3.4e-09 1.8e-06 28.0 1.0 1 23 318 340 318 340 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF347-202 - 840 1.1e-118 381.5 144.4 4 20 1e-08 5.7e-06 26.5 1.3 1 23 346 368 346 368 0.95 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF347-202 - 840 1.1e-118 381.5 144.4 5 20 4e-08 2.2e-05 24.7 0.1 1 23 374 396 374 396 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF347-202 - 840 1.1e-118 381.5 144.4 6 20 2.2e-09 1.2e-06 28.6 1.8 1 23 402 424 402 424 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF347-202 - 840 1.1e-118 381.5 144.4 7 20 6.3e-06 0.0034 17.8 0.0 1 23 430 452 430 452 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF347-202 - 840 1.1e-118 381.5 144.4 8 20 2.4e-09 1.3e-06 28.5 3.7 1 23 458 480 458 480 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF347-202 - 840 1.1e-118 381.5 144.4 9 20 7.9e-08 4.3e-05 23.7 1.0 1 23 486 508 486 508 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF347-202 - 840 1.1e-118 381.5 144.4 10 20 1e-09 5.6e-07 29.7 1.5 1 23 514 536 514 536 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF347-202 - 840 1.1e-118 381.5 144.4 11 20 1.9e-06 0.0011 19.4 0.3 1 23 542 564 542 564 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF347-202 - 840 1.1e-118 381.5 144.4 12 20 1.3e-08 7.3e-06 26.2 1.2 1 23 570 592 570 592 0.95 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF347-202 - 840 1.1e-118 381.5 144.4 13 20 1.1e-08 6e-06 26.4 3.4 1 23 598 620 598 620 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF347-202 - 840 1.1e-118 381.5 144.4 14 20 0.03 16 6.2 0.2 7 23 632 648 632 648 0.94 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF347-202 - 840 1.1e-118 381.5 144.4 15 20 1.3e-09 6.9e-07 29.4 2.3 1 23 654 676 654 676 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF347-202 - 840 1.1e-118 381.5 144.4 16 20 5.4e-09 2.9e-06 27.4 0.6 1 23 682 704 682 704 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF347-202 - 840 1.1e-118 381.5 144.4 17 20 2.5e-07 0.00013 22.2 0.2 1 23 710 732 710 732 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF347-202 - 840 1.1e-118 381.5 144.4 18 20 1.3e-08 7.3e-06 26.2 1.2 1 23 738 760 738 760 0.95 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF347-202 - 840 1.1e-118 381.5 144.4 19 20 5.4e-09 2.9e-06 27.4 0.7 1 23 766 788 766 788 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF347-202 - 840 1.1e-118 381.5 144.4 20 20 0.00051 0.28 11.7 0.2 5 23 795 813 793 813 0.94 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZNF347-202 - 840 1.1e-54 178.3 136.6 1 21 6.2 3.4e+03 -0.6 0.0 1 15 206 220 206 222 0.84 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF347-202 - 840 1.1e-54 178.3 136.6 2 21 0.019 10 7.3 0.3 5 23 266 284 262 285 0.90 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF347-202 - 840 1.1e-54 178.3 136.6 3 21 0.00013 0.071 14.0 0.6 1 23 290 312 290 313 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF347-202 - 840 1.1e-54 178.3 136.6 4 21 1.7e-06 0.00094 19.8 0.9 1 23 318 340 318 341 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF347-202 - 840 1.1e-54 178.3 136.6 5 21 5e-05 0.027 15.3 0.9 1 23 346 368 346 369 0.90 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF347-202 - 840 1.1e-54 178.3 136.6 6 21 0.00026 0.14 13.1 0.2 1 23 374 396 374 397 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF347-202 - 840 1.1e-54 178.3 136.6 7 21 3.9e-06 0.0021 18.7 1.3 1 23 402 424 402 425 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF347-202 - 840 1.1e-54 178.3 136.6 8 21 0.0025 1.4 10.0 0.1 1 23 430 452 430 453 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF347-202 - 840 1.1e-54 178.3 136.6 9 21 4.4e-05 0.024 15.5 2.8 1 23 458 480 458 481 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF347-202 - 840 1.1e-54 178.3 136.6 10 21 0.0012 0.66 11.0 0.7 1 23 486 508 486 509 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF347-202 - 840 1.1e-54 178.3 136.6 11 21 1.8e-05 0.0096 16.7 1.0 1 23 514 536 514 537 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF347-202 - 840 1.1e-54 178.3 136.6 12 21 0.00051 0.28 12.1 0.3 1 23 542 564 542 565 0.91 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF347-202 - 840 1.1e-54 178.3 136.6 13 21 5.7e-05 0.031 15.1 0.8 1 23 570 592 570 593 0.89 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF347-202 - 840 1.1e-54 178.3 136.6 14 21 8.9e-05 0.048 14.5 2.3 1 23 598 620 598 621 0.91 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF347-202 - 840 1.1e-54 178.3 136.6 15 21 6.3 3.4e+03 -0.6 0.2 7 23 632 648 632 649 0.85 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF347-202 - 840 1.1e-54 178.3 136.6 16 21 1.4e-05 0.0077 17.0 1.7 1 23 654 676 654 677 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF347-202 - 840 1.1e-54 178.3 136.6 17 21 3e-05 0.016 16.0 0.6 1 23 682 704 682 705 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF347-202 - 840 1.1e-54 178.3 136.6 18 21 0.0001 0.056 14.3 0.3 1 23 710 732 710 733 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF347-202 - 840 1.1e-54 178.3 136.6 19 21 5.7e-05 0.031 15.1 0.8 1 23 738 760 738 761 0.89 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF347-202 - 840 1.1e-54 178.3 136.6 20 21 2.7e-05 0.015 16.1 0.6 1 23 766 788 766 789 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF347-202 - 840 1.1e-54 178.3 136.6 21 21 0.031 17 6.6 0.1 5 23 795 813 793 814 0.87 C2H2-type zinc finger zf-C2H2_11 PF16622.5 29 ZNF347-202 - 840 1.9e-27 94.7 76.9 1 18 0.17 92 2.9 0.1 5 23 290 308 287 312 0.74 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF347-202 - 840 1.9e-27 94.7 76.9 2 18 0.0093 5.1 7.0 1.0 5 26 318 339 316 340 0.91 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF347-202 - 840 1.9e-27 94.7 76.9 3 18 0.0005 0.27 11.0 0.1 5 26 346 367 343 368 0.92 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF347-202 - 840 1.9e-27 94.7 76.9 4 18 0.094 51 3.7 0.0 5 23 374 392 371 394 0.84 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF347-202 - 840 1.9e-27 94.7 76.9 5 18 0.0062 3.4 7.5 0.0 5 26 402 423 399 424 0.91 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF347-202 - 840 1.9e-27 94.7 76.9 6 18 0.0041 2.2 8.1 0.0 5 26 430 451 427 452 0.93 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF347-202 - 840 1.9e-27 94.7 76.9 7 18 0.05 27 4.6 0.7 5 26 458 479 455 480 0.89 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF347-202 - 840 1.9e-27 94.7 76.9 8 18 0.11 59 3.5 0.1 5 25 486 506 483 508 0.81 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF347-202 - 840 1.9e-27 94.7 76.9 9 18 0.0089 4.8 7.0 0.1 5 26 514 535 511 536 0.90 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF347-202 - 840 1.9e-27 94.7 76.9 10 18 0.013 7 6.5 0.3 7 26 544 563 542 564 0.90 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF347-202 - 840 1.9e-27 94.7 76.9 11 18 0.00025 0.13 12.0 0.1 5 26 570 591 567 592 0.92 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF347-202 - 840 1.9e-27 94.7 76.9 12 18 0.0028 1.5 8.6 0.3 5 26 598 619 595 620 0.93 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF347-202 - 840 1.9e-27 94.7 76.9 13 18 0.00014 0.076 12.8 0.2 5 26 654 675 651 676 0.92 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF347-202 - 840 1.9e-27 94.7 76.9 14 18 0.00039 0.21 11.4 0.4 5 25 682 702 680 704 0.91 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF347-202 - 840 1.9e-27 94.7 76.9 15 18 0.0052 2.8 7.8 0.2 6 26 711 731 708 732 0.90 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF347-202 - 840 1.9e-27 94.7 76.9 16 18 0.00029 0.16 11.8 0.2 5 26 738 759 736 760 0.93 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF347-202 - 840 1.9e-27 94.7 76.9 17 18 0.00041 0.22 11.3 0.1 5 26 766 787 763 788 0.93 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF347-202 - 840 1.9e-27 94.7 76.9 18 18 0.26 1.4e+02 2.3 0.2 9 26 795 812 793 813 0.90 zinc-finger C2H2-type KRAB PF01352.27 42 ZNF347-202 - 840 5.9e-26 89.9 0.2 1 1 2.6e-28 1.4e-25 88.6 0.2 2 41 8 47 7 47 0.98 KRAB box Zn-ribbon_8 PF09723.10 40 ZNF347-202 - 840 7e-24 83.7 95.3 1 16 0.046 25 5.1 0.2 6 16 290 300 262 309 0.69 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF347-202 - 840 7e-24 83.7 95.3 2 16 1.1e-05 0.0061 16.7 3.9 6 34 318 353 317 357 0.91 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF347-202 - 840 7e-24 83.7 95.3 3 16 2.4e-05 0.013 15.6 3.6 6 37 346 384 345 386 0.84 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF347-202 - 840 7e-24 83.7 95.3 4 16 0.0041 2.2 8.5 0.2 6 21 374 389 373 397 0.82 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF347-202 - 840 7e-24 83.7 95.3 5 16 0.00023 0.12 12.5 4.3 6 34 402 437 401 442 0.87 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF347-202 - 840 7e-24 83.7 95.3 6 16 0.0089 4.8 7.4 0.3 6 20 430 444 429 449 0.85 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF347-202 - 840 7e-24 83.7 95.3 7 16 1.6e-05 0.0087 16.2 2.5 6 36 458 495 457 498 0.89 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF347-202 - 840 7e-24 83.7 95.3 8 16 1.6e-05 0.0085 16.2 1.5 6 34 514 549 513 553 0.91 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF347-202 - 840 7e-24 83.7 95.3 9 16 0.025 13 6.0 0.2 6 20 542 556 541 561 0.84 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF347-202 - 840 7e-24 83.7 95.3 10 16 0.00013 0.068 13.3 4.2 6 34 570 605 569 608 0.87 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF347-202 - 840 7e-24 83.7 95.3 11 16 0.0061 3.3 7.9 0.5 6 16 598 608 597 624 0.82 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF347-202 - 840 7e-24 83.7 95.3 12 16 0.00019 0.1 12.7 4.2 6 35 654 690 653 693 0.82 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF347-202 - 840 7e-24 83.7 95.3 13 16 0.00011 0.062 13.4 4.0 6 34 682 717 681 723 0.89 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF347-202 - 840 7e-24 83.7 95.3 14 16 0.0023 1.2 9.3 0.2 6 21 710 725 708 732 0.85 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF347-202 - 840 7e-24 83.7 95.3 15 16 5.2e-05 0.028 14.5 3.7 6 35 738 774 737 777 0.86 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF347-202 - 840 7e-24 83.7 95.3 16 16 0.0027 1.5 9.0 0.8 6 22 766 788 765 801 0.71 Zinc ribbon domain zf-C2H2_6 PF13912.6 27 ZNF347-202 - 840 4.1e-18 64.9 149.8 1 18 0.0005 0.27 11.3 0.6 2 20 290 308 290 312 0.95 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF347-202 - 840 4.1e-18 64.9 149.8 2 18 0.00024 0.13 12.3 0.6 1 13 317 329 317 340 0.87 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF347-202 - 840 4.1e-18 64.9 149.8 3 18 0.0019 1.1 9.4 0.9 2 12 346 356 346 357 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF347-202 - 840 4.1e-18 64.9 149.8 4 18 0.0017 0.91 9.6 0.3 2 24 374 396 374 399 0.76 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF347-202 - 840 4.1e-18 64.9 149.8 5 18 0.0091 4.9 7.3 3.4 2 12 402 412 402 423 0.88 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF347-202 - 840 4.1e-18 64.9 149.8 6 18 0.0061 3.3 7.8 0.4 2 11 430 439 430 440 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF347-202 - 840 4.1e-18 64.9 149.8 7 18 0.00063 0.34 11.0 0.7 2 12 458 468 458 476 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF347-202 - 840 4.1e-18 64.9 149.8 8 18 0.00092 0.5 10.4 0.8 2 20 486 504 486 508 0.91 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF347-202 - 840 4.1e-18 64.9 149.8 9 18 0.0019 1.1 9.4 0.9 2 12 514 524 514 525 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF347-202 - 840 4.1e-18 64.9 149.8 10 18 0.00017 0.091 12.8 0.5 2 20 542 560 542 564 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF347-202 - 840 4.1e-18 64.9 149.8 11 18 0.016 8.6 6.5 4.2 2 12 570 580 570 591 0.89 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF347-202 - 840 4.1e-18 64.9 149.8 12 18 0.002 1.1 9.4 1.4 2 12 598 608 598 609 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF347-202 - 840 4.1e-18 64.9 149.8 13 18 0.022 12 6.1 4.8 2 12 654 664 654 675 0.85 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF347-202 - 840 4.1e-18 64.9 149.8 14 18 0.012 6.3 6.9 0.5 2 12 682 692 682 695 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF347-202 - 840 4.1e-18 64.9 149.8 15 18 0.00071 0.39 10.8 0.4 2 22 710 730 710 734 0.86 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF347-202 - 840 4.1e-18 64.9 149.8 16 18 0.016 8.6 6.5 4.2 2 12 738 748 738 759 0.89 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF347-202 - 840 4.1e-18 64.9 149.8 17 18 0.0049 2.7 8.1 0.7 2 12 766 776 766 778 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF347-202 - 840 4.1e-18 64.9 149.8 18 18 5.4 2.9e+03 -1.6 0.2 6 20 795 809 795 813 0.82 C2H2-type zinc finger XPA_N PF01286.18 32 ZNF347-202 - 840 7.5e-16 57.9 54.9 1 18 0.06 32 4.7 0.0 3 12 291 300 289 307 0.89 XPA protein N-terminal XPA_N PF01286.18 32 ZNF347-202 - 840 7.5e-16 57.9 54.9 2 18 0.061 33 4.6 0.1 3 16 319 333 317 336 0.74 XPA protein N-terminal XPA_N PF01286.18 32 ZNF347-202 - 840 7.5e-16 57.9 54.9 3 18 0.068 37 4.5 0.0 3 12 347 356 345 364 0.82 XPA protein N-terminal XPA_N PF01286.18 32 ZNF347-202 - 840 7.5e-16 57.9 54.9 4 18 0.045 25 5.0 0.1 3 11 375 383 373 386 0.90 XPA protein N-terminal XPA_N PF01286.18 32 ZNF347-202 - 840 7.5e-16 57.9 54.9 5 18 0.044 24 5.1 0.0 3 13 403 413 401 423 0.75 XPA protein N-terminal XPA_N PF01286.18 32 ZNF347-202 - 840 7.5e-16 57.9 54.9 6 18 0.035 19 5.4 0.1 3 12 431 440 429 441 0.89 XPA protein N-terminal XPA_N PF01286.18 32 ZNF347-202 - 840 7.5e-16 57.9 54.9 7 18 0.16 86 3.3 0.0 3 11 459 467 457 475 0.88 XPA protein N-terminal XPA_N PF01286.18 32 ZNF347-202 - 840 7.5e-16 57.9 54.9 8 18 0.035 19 5.4 0.1 3 11 487 495 485 504 0.86 XPA protein N-terminal XPA_N PF01286.18 32 ZNF347-202 - 840 7.5e-16 57.9 54.9 9 18 0.067 36 4.5 0.1 3 12 515 524 513 532 0.81 XPA protein N-terminal XPA_N PF01286.18 32 ZNF347-202 - 840 7.5e-16 57.9 54.9 10 18 0.072 39 4.4 0.0 3 12 543 552 541 556 0.89 XPA protein N-terminal XPA_N PF01286.18 32 ZNF347-202 - 840 7.5e-16 57.9 54.9 11 18 0.074 40 4.4 0.1 3 12 571 580 569 588 0.84 XPA protein N-terminal XPA_N PF01286.18 32 ZNF347-202 - 840 7.5e-16 57.9 54.9 12 18 0.0084 4.5 7.4 0.1 3 19 599 616 597 617 0.86 XPA protein N-terminal XPA_N PF01286.18 32 ZNF347-202 - 840 7.5e-16 57.9 54.9 13 18 0.074 40 4.4 0.1 3 12 655 664 653 672 0.84 XPA protein N-terminal XPA_N PF01286.18 32 ZNF347-202 - 840 7.5e-16 57.9 54.9 14 18 0.021 12 6.1 0.1 3 13 683 693 681 700 0.78 XPA protein N-terminal XPA_N PF01286.18 32 ZNF347-202 - 840 7.5e-16 57.9 54.9 15 18 0.19 1e+02 3.0 0.0 3 12 711 720 709 727 0.90 XPA protein N-terminal XPA_N PF01286.18 32 ZNF347-202 - 840 7.5e-16 57.9 54.9 16 18 0.074 40 4.4 0.1 3 12 739 748 737 756 0.84 XPA protein N-terminal XPA_N PF01286.18 32 ZNF347-202 - 840 7.5e-16 57.9 54.9 17 18 0.011 6.1 7.0 0.1 3 13 767 777 765 784 0.79 XPA protein N-terminal XPA_N PF01286.18 32 ZNF347-202 - 840 7.5e-16 57.9 54.9 18 18 2.8 1.5e+03 -0.7 0.2 6 12 795 801 794 803 0.88 XPA protein N-terminal C1_1 PF00130.22 53 ZNF347-202 - 840 3.6e-13 49.2 61.7 1 15 0.00098 0.53 10.2 0.7 1 37 280 326 280 330 0.86 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF347-202 - 840 3.6e-13 49.2 61.7 2 15 0.0083 4.5 7.2 2.2 2 37 309 354 308 358 0.78 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF347-202 - 840 3.6e-13 49.2 61.7 3 15 0.0056 3.1 7.8 1.6 6 36 341 381 335 383 0.79 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF347-202 - 840 3.6e-13 49.2 61.7 4 15 0.0016 0.86 9.5 0.5 9 37 371 410 360 414 0.83 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF347-202 - 840 3.6e-13 49.2 61.7 5 15 0.00017 0.091 12.7 0.8 2 37 420 466 420 470 0.91 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF347-202 - 840 3.6e-13 49.2 61.7 6 15 0.016 8.8 6.3 2.2 6 36 452 493 448 498 0.77 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF347-202 - 840 3.6e-13 49.2 61.7 7 15 0.0023 1.2 9.0 1.7 1 37 476 522 476 526 0.86 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF347-202 - 840 3.6e-13 49.2 61.7 8 15 0.016 8.5 6.4 1.9 1 35 504 548 504 551 0.73 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF347-202 - 840 3.6e-13 49.2 61.7 9 15 0.025 14 5.7 1.4 10 37 540 578 528 579 0.79 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF347-202 - 840 3.6e-13 49.2 61.7 10 15 0.0017 0.95 9.4 1.7 1 38 560 607 560 611 0.82 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF347-202 - 840 3.6e-13 49.2 61.7 11 15 0.086 47 4.0 0.2 9 23 595 609 584 619 0.76 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF347-202 - 840 3.6e-13 49.2 61.7 12 15 0.0013 0.71 9.8 0.7 1 37 644 690 644 699 0.84 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF347-202 - 840 3.6e-13 49.2 61.7 13 15 0.00059 0.32 10.9 0.8 2 37 701 746 700 750 0.86 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF347-202 - 840 3.6e-13 49.2 61.7 14 15 0.0044 2.4 8.1 2.4 4 37 731 774 728 778 0.81 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF347-202 - 840 3.6e-13 49.2 61.7 15 15 0.072 39 4.2 0.3 9 23 763 777 752 790 0.75 Phorbol esters/diacylglycerol binding domain (C1 domain) zf_UBZ PF18439.1 32 ZNF347-202 - 840 1.2e-12 47.2 73.2 1 19 5 2.7e+03 -2.0 0.1 8 21 267 281 267 281 0.89 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF347-202 - 840 1.2e-12 47.2 73.2 2 19 0.12 64 3.3 0.1 3 20 290 308 288 309 0.80 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF347-202 - 840 1.2e-12 47.2 73.2 3 19 0.0015 0.83 9.3 0.2 2 21 317 337 316 337 0.91 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF347-202 - 840 1.2e-12 47.2 73.2 4 19 0.048 26 4.5 0.1 3 14 346 357 344 361 0.83 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF347-202 - 840 1.2e-12 47.2 73.2 5 19 0.11 58 3.4 0.1 3 12 374 383 372 393 0.83 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF347-202 - 840 1.2e-12 47.2 73.2 6 19 0.037 20 4.9 0.1 3 15 402 414 400 420 0.82 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF347-202 - 840 1.2e-12 47.2 73.2 7 19 0.15 81 2.9 0.1 3 12 430 439 428 446 0.87 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF347-202 - 840 1.2e-12 47.2 73.2 8 19 0.075 41 3.9 0.2 3 13 458 468 456 477 0.80 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF347-202 - 840 1.2e-12 47.2 73.2 9 19 0.013 7 6.3 0.1 3 21 486 505 484 505 0.89 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF347-202 - 840 1.2e-12 47.2 73.2 10 19 0.027 14 5.3 0.2 3 16 514 528 512 533 0.78 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF347-202 - 840 1.2e-12 47.2 73.2 11 19 0.016 8.9 6.0 0.0 3 21 542 561 540 561 0.88 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF347-202 - 840 1.2e-12 47.2 73.2 12 19 0.039 21 4.8 0.1 3 15 570 582 568 588 0.83 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF347-202 - 840 1.2e-12 47.2 73.2 13 19 0.052 28 4.4 0.1 3 14 598 609 596 616 0.83 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF347-202 - 840 1.2e-12 47.2 73.2 14 19 0.039 21 4.8 0.1 3 15 654 666 652 672 0.83 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF347-202 - 840 1.2e-12 47.2 73.2 15 19 0.0042 2.3 7.9 0.1 3 20 682 700 680 701 0.84 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF347-202 - 840 1.2e-12 47.2 73.2 16 19 0.0094 5.1 6.8 0.1 3 21 710 729 708 729 0.89 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF347-202 - 840 1.2e-12 47.2 73.2 17 19 0.039 21 4.8 0.1 3 15 738 750 736 756 0.83 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF347-202 - 840 1.2e-12 47.2 73.2 18 19 0.0051 2.7 7.6 0.1 3 20 766 784 764 785 0.84 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF347-202 - 840 1.2e-12 47.2 73.2 19 19 3.7 2e+03 -1.5 0.1 7 20 795 809 795 810 0.78 Ubiquitin-Binding Zinc Finger zinc_ribbon_15 PF17032.5 86 ZNF347-202 - 840 4.9e-11 43.2 74.1 1 13 0.0089 4.8 8.0 0.5 39 77 263 301 253 308 0.87 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF347-202 - 840 4.9e-11 43.2 74.1 2 13 0.00055 0.3 11.9 3.7 33 79 313 359 302 364 0.87 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF347-202 - 840 4.9e-11 43.2 74.1 3 13 0.0016 0.86 10.4 1.9 35 79 371 415 362 419 0.87 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF347-202 - 840 4.9e-11 43.2 74.1 4 13 0.00092 0.5 11.1 0.4 29 78 421 470 417 476 0.90 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF347-202 - 840 4.9e-11 43.2 74.1 5 13 0.0027 1.5 9.7 0.8 33 78 453 498 441 504 0.82 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF347-202 - 840 4.9e-11 43.2 74.1 6 13 0.0038 2.1 9.2 2.0 35 78 483 526 476 529 0.84 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF347-202 - 840 4.9e-11 43.2 74.1 7 13 0.025 13 6.6 5.9 30 74 508 550 487 557 0.75 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF347-202 - 840 4.9e-11 43.2 74.1 8 13 0.0017 0.91 10.3 1.4 34 78 566 610 554 616 0.83 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF347-202 - 840 4.9e-11 43.2 74.1 9 13 0.00093 0.5 11.1 1.8 34 78 650 694 624 699 0.86 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF347-202 - 840 4.9e-11 43.2 74.1 10 13 0.0018 0.95 10.3 1.6 36 75 680 719 670 724 0.85 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF347-202 - 840 4.9e-11 43.2 74.1 11 13 0.0026 1.4 9.7 2.0 32 79 704 751 699 758 0.86 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF347-202 - 840 4.9e-11 43.2 74.1 12 13 0.0026 1.4 9.7 2.4 33 78 733 778 724 784 0.85 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF347-202 - 840 4.9e-11 43.2 74.1 13 13 0.38 2.1e+02 2.8 0.5 35 68 763 796 758 811 0.67 zinc-ribbon family ZZ PF00569.17 45 ZNF347-202 - 840 5.5e-07 29.3 74.1 1 17 1 5.6e+02 0.5 0.2 3 12 288 297 286 304 0.75 Zinc finger, ZZ type ZZ PF00569.17 45 ZNF347-202 - 840 5.5e-07 29.3 74.1 2 17 0.041 22 4.9 0.2 3 12 316 325 314 330 0.84 Zinc finger, ZZ type ZZ PF00569.17 45 ZNF347-202 - 840 5.5e-07 29.3 74.1 3 17 0.072 39 4.2 0.2 3 12 344 353 342 360 0.82 Zinc finger, ZZ type ZZ PF00569.17 45 ZNF347-202 - 840 5.5e-07 29.3 74.1 4 17 0.027 14 5.5 0.1 3 15 372 382 370 393 0.77 Zinc finger, ZZ type ZZ PF00569.17 45 ZNF347-202 - 840 5.5e-07 29.3 74.1 5 17 0.081 44 4.0 0.2 4 12 401 409 399 415 0.82 Zinc finger, ZZ type ZZ PF00569.17 45 ZNF347-202 - 840 5.5e-07 29.3 74.1 6 17 0.023 12 5.8 0.1 3 19 428 442 426 448 0.78 Zinc finger, ZZ type ZZ PF00569.17 45 ZNF347-202 - 840 5.5e-07 29.3 74.1 7 17 0.12 68 3.4 0.3 4 12 457 465 455 472 0.83 Zinc finger, ZZ type ZZ PF00569.17 45 ZNF347-202 - 840 5.5e-07 29.3 74.1 8 17 0.028 15 5.5 0.2 3 19 484 496 482 501 0.77 Zinc finger, ZZ type ZZ PF00569.17 45 ZNF347-202 - 840 5.5e-07 29.3 74.1 9 17 0.072 39 4.2 0.2 3 12 512 521 510 527 0.82 Zinc finger, ZZ type ZZ PF00569.17 45 ZNF347-202 - 840 5.5e-07 29.3 74.1 10 17 0.12 66 3.4 0.1 5 13 542 550 539 559 0.74 Zinc finger, ZZ type ZZ PF00569.17 45 ZNF347-202 - 840 5.5e-07 29.3 74.1 11 17 0.072 39 4.2 0.2 3 12 568 577 566 583 0.82 Zinc finger, ZZ type ZZ PF00569.17 45 ZNF347-202 - 840 5.5e-07 29.3 74.1 12 17 0.059 32 4.4 0.2 3 12 596 605 594 613 0.80 Zinc finger, ZZ type ZZ PF00569.17 45 ZNF347-202 - 840 5.5e-07 29.3 74.1 13 17 0.072 39 4.2 0.2 3 12 652 661 650 667 0.82 Zinc finger, ZZ type ZZ PF00569.17 45 ZNF347-202 - 840 5.5e-07 29.3 74.1 14 17 0.086 47 3.9 0.1 3 12 680 689 679 694 0.80 Zinc finger, ZZ type ZZ PF00569.17 45 ZNF347-202 - 840 5.5e-07 29.3 74.1 15 17 0.047 25 4.8 0.1 4 15 709 720 707 725 0.78 Zinc finger, ZZ type ZZ PF00569.17 45 ZNF347-202 - 840 5.5e-07 29.3 74.1 16 17 0.051 28 4.6 0.2 3 12 736 745 734 751 0.82 Zinc finger, ZZ type ZZ PF00569.17 45 ZNF347-202 - 840 5.5e-07 29.3 74.1 17 17 0.05 27 4.7 0.2 3 12 764 773 762 778 0.81 Zinc finger, ZZ type # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF347-202.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF347-202.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF347-202.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF347-202.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF347-202.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:04:48 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- KRAB PF01352.27 42 ZNF347-203 - 84 2.3e-28 97.5 0.1 1 1 1.7e-32 3e-28 97.2 0.1 2 42 8 48 7 48 0.98 KRAB box # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF347-203.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF347-203.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF347-203.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF347-203.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF347-203.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:04:48 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF347-204.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF347-204.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF347-204.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF347-204.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF347-204.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:04:49 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF347-205.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF347-205.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF347-205.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF347-205.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF347-205.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:04:49 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF347-206.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF347-206.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF347-206.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF347-206.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF347-206.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:04:49 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZNF347-207 - 840 1.1e-150 484.1 135.3 1 20 1.7e-09 9.5e-07 29.0 4.0 1 25 276 300 276 301 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF347-207 - 840 1.1e-150 484.1 135.3 2 20 9.2e-09 5e-06 26.7 0.5 1 25 304 328 304 329 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF347-207 - 840 1.1e-150 484.1 135.3 3 20 5.1e-11 2.7e-08 33.8 0.5 2 25 333 356 332 357 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF347-207 - 840 1.1e-150 484.1 135.3 4 20 9.5e-11 5.2e-08 33.0 1.4 1 24 360 383 360 384 0.97 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF347-207 - 840 1.1e-150 484.1 135.3 5 20 7.3e-09 4e-06 27.0 0.2 4 25 391 412 388 413 0.90 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF347-207 - 840 1.1e-150 484.1 135.3 6 20 1.4e-09 7.8e-07 29.2 0.8 1 24 416 439 416 440 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF347-207 - 840 1.1e-150 484.1 135.3 7 20 1.6e-08 8.9e-06 25.9 0.6 5 25 448 468 444 469 0.89 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF347-207 - 840 1.1e-150 484.1 135.3 8 20 5.1e-10 2.8e-07 30.7 1.2 1 24 472 495 472 496 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF347-207 - 840 1.1e-150 484.1 135.3 9 20 9.1e-10 4.9e-07 29.9 0.4 1 25 500 524 500 525 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF347-207 - 840 1.1e-150 484.1 135.3 10 20 7.2e-09 3.9e-06 27.0 0.4 1 25 528 552 528 552 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF347-207 - 840 1.1e-150 484.1 135.3 11 20 1.9e-09 1e-06 28.9 0.4 2 25 557 580 556 581 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF347-207 - 840 1.1e-150 484.1 135.3 12 20 6.4e-10 3.5e-07 30.4 2.9 1 26 584 609 584 609 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF347-207 - 840 1.1e-150 484.1 135.3 13 20 9.5e-08 5.2e-05 23.5 0.1 2 25 613 636 612 637 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF347-207 - 840 1.1e-150 484.1 135.3 14 20 9.1e-10 4.9e-07 29.9 0.4 1 25 640 664 640 665 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF347-207 - 840 1.1e-150 484.1 135.3 15 20 9e-11 4.9e-08 33.1 0.8 1 25 668 692 668 693 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF347-207 - 840 1.1e-150 484.1 135.3 16 20 9.2e-12 5e-09 36.2 0.4 2 25 697 720 696 720 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF347-207 - 840 1.1e-150 484.1 135.3 17 20 4.4e-10 2.4e-07 30.9 0.6 1 25 724 748 724 749 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF347-207 - 840 1.1e-150 484.1 135.3 18 20 7e-11 3.8e-08 33.4 0.9 1 25 752 776 752 777 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF347-207 - 840 1.1e-150 484.1 135.3 19 20 2.6e-07 0.00014 22.1 0.3 2 17 781 796 780 798 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF347-207 - 840 1.1e-150 484.1 135.3 20 20 0.00043 0.24 11.9 0.1 1 17 805 821 805 823 0.91 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZNF347-207 - 840 1.1e-118 381.5 144.4 1 20 1.9e-06 0.001 19.4 0.3 5 23 266 284 264 284 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF347-207 - 840 1.1e-118 381.5 144.4 2 20 4.4e-08 2.4e-05 24.5 1.0 1 23 290 312 290 312 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF347-207 - 840 1.1e-118 381.5 144.4 3 20 3.4e-09 1.8e-06 28.0 1.0 1 23 318 340 318 340 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF347-207 - 840 1.1e-118 381.5 144.4 4 20 1e-08 5.7e-06 26.5 1.3 1 23 346 368 346 368 0.95 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF347-207 - 840 1.1e-118 381.5 144.4 5 20 4e-08 2.2e-05 24.7 0.1 1 23 374 396 374 396 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF347-207 - 840 1.1e-118 381.5 144.4 6 20 2.2e-09 1.2e-06 28.6 1.8 1 23 402 424 402 424 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF347-207 - 840 1.1e-118 381.5 144.4 7 20 6.3e-06 0.0034 17.8 0.0 1 23 430 452 430 452 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF347-207 - 840 1.1e-118 381.5 144.4 8 20 2.4e-09 1.3e-06 28.5 3.7 1 23 458 480 458 480 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF347-207 - 840 1.1e-118 381.5 144.4 9 20 7.9e-08 4.3e-05 23.7 1.0 1 23 486 508 486 508 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF347-207 - 840 1.1e-118 381.5 144.4 10 20 1e-09 5.6e-07 29.7 1.5 1 23 514 536 514 536 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF347-207 - 840 1.1e-118 381.5 144.4 11 20 1.9e-06 0.0011 19.4 0.3 1 23 542 564 542 564 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF347-207 - 840 1.1e-118 381.5 144.4 12 20 1.3e-08 7.3e-06 26.2 1.2 1 23 570 592 570 592 0.95 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF347-207 - 840 1.1e-118 381.5 144.4 13 20 1.1e-08 6e-06 26.4 3.4 1 23 598 620 598 620 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF347-207 - 840 1.1e-118 381.5 144.4 14 20 0.03 16 6.2 0.2 7 23 632 648 632 648 0.94 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF347-207 - 840 1.1e-118 381.5 144.4 15 20 1.3e-09 6.9e-07 29.4 2.3 1 23 654 676 654 676 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF347-207 - 840 1.1e-118 381.5 144.4 16 20 5.4e-09 2.9e-06 27.4 0.6 1 23 682 704 682 704 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF347-207 - 840 1.1e-118 381.5 144.4 17 20 2.5e-07 0.00013 22.2 0.2 1 23 710 732 710 732 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF347-207 - 840 1.1e-118 381.5 144.4 18 20 1.3e-08 7.3e-06 26.2 1.2 1 23 738 760 738 760 0.95 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF347-207 - 840 1.1e-118 381.5 144.4 19 20 5.4e-09 2.9e-06 27.4 0.7 1 23 766 788 766 788 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF347-207 - 840 1.1e-118 381.5 144.4 20 20 0.00051 0.28 11.7 0.2 5 23 795 813 793 813 0.94 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZNF347-207 - 840 1.1e-54 178.3 136.6 1 21 6.2 3.4e+03 -0.6 0.0 1 15 206 220 206 222 0.84 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF347-207 - 840 1.1e-54 178.3 136.6 2 21 0.019 10 7.3 0.3 5 23 266 284 262 285 0.90 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF347-207 - 840 1.1e-54 178.3 136.6 3 21 0.00013 0.071 14.0 0.6 1 23 290 312 290 313 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF347-207 - 840 1.1e-54 178.3 136.6 4 21 1.7e-06 0.00094 19.8 0.9 1 23 318 340 318 341 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF347-207 - 840 1.1e-54 178.3 136.6 5 21 5e-05 0.027 15.3 0.9 1 23 346 368 346 369 0.90 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF347-207 - 840 1.1e-54 178.3 136.6 6 21 0.00026 0.14 13.1 0.2 1 23 374 396 374 397 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF347-207 - 840 1.1e-54 178.3 136.6 7 21 3.9e-06 0.0021 18.7 1.3 1 23 402 424 402 425 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF347-207 - 840 1.1e-54 178.3 136.6 8 21 0.0025 1.4 10.0 0.1 1 23 430 452 430 453 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF347-207 - 840 1.1e-54 178.3 136.6 9 21 4.4e-05 0.024 15.5 2.8 1 23 458 480 458 481 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF347-207 - 840 1.1e-54 178.3 136.6 10 21 0.0012 0.66 11.0 0.7 1 23 486 508 486 509 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF347-207 - 840 1.1e-54 178.3 136.6 11 21 1.8e-05 0.0096 16.7 1.0 1 23 514 536 514 537 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF347-207 - 840 1.1e-54 178.3 136.6 12 21 0.00051 0.28 12.1 0.3 1 23 542 564 542 565 0.91 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF347-207 - 840 1.1e-54 178.3 136.6 13 21 5.7e-05 0.031 15.1 0.8 1 23 570 592 570 593 0.89 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF347-207 - 840 1.1e-54 178.3 136.6 14 21 8.9e-05 0.048 14.5 2.3 1 23 598 620 598 621 0.91 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF347-207 - 840 1.1e-54 178.3 136.6 15 21 6.3 3.4e+03 -0.6 0.2 7 23 632 648 632 649 0.85 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF347-207 - 840 1.1e-54 178.3 136.6 16 21 1.4e-05 0.0077 17.0 1.7 1 23 654 676 654 677 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF347-207 - 840 1.1e-54 178.3 136.6 17 21 3e-05 0.016 16.0 0.6 1 23 682 704 682 705 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF347-207 - 840 1.1e-54 178.3 136.6 18 21 0.0001 0.056 14.3 0.3 1 23 710 732 710 733 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF347-207 - 840 1.1e-54 178.3 136.6 19 21 5.7e-05 0.031 15.1 0.8 1 23 738 760 738 761 0.89 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF347-207 - 840 1.1e-54 178.3 136.6 20 21 2.7e-05 0.015 16.1 0.6 1 23 766 788 766 789 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF347-207 - 840 1.1e-54 178.3 136.6 21 21 0.031 17 6.6 0.1 5 23 795 813 793 814 0.87 C2H2-type zinc finger zf-C2H2_11 PF16622.5 29 ZNF347-207 - 840 1.9e-27 94.7 76.9 1 18 0.17 92 2.9 0.1 5 23 290 308 287 312 0.74 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF347-207 - 840 1.9e-27 94.7 76.9 2 18 0.0093 5.1 7.0 1.0 5 26 318 339 316 340 0.91 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF347-207 - 840 1.9e-27 94.7 76.9 3 18 0.0005 0.27 11.0 0.1 5 26 346 367 343 368 0.92 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF347-207 - 840 1.9e-27 94.7 76.9 4 18 0.094 51 3.7 0.0 5 23 374 392 371 394 0.84 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF347-207 - 840 1.9e-27 94.7 76.9 5 18 0.0062 3.4 7.5 0.0 5 26 402 423 399 424 0.91 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF347-207 - 840 1.9e-27 94.7 76.9 6 18 0.0041 2.2 8.1 0.0 5 26 430 451 427 452 0.93 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF347-207 - 840 1.9e-27 94.7 76.9 7 18 0.05 27 4.6 0.7 5 26 458 479 455 480 0.89 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF347-207 - 840 1.9e-27 94.7 76.9 8 18 0.11 59 3.5 0.1 5 25 486 506 483 508 0.81 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF347-207 - 840 1.9e-27 94.7 76.9 9 18 0.0089 4.8 7.0 0.1 5 26 514 535 511 536 0.90 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF347-207 - 840 1.9e-27 94.7 76.9 10 18 0.013 7 6.5 0.3 7 26 544 563 542 564 0.90 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF347-207 - 840 1.9e-27 94.7 76.9 11 18 0.00025 0.13 12.0 0.1 5 26 570 591 567 592 0.92 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF347-207 - 840 1.9e-27 94.7 76.9 12 18 0.0028 1.5 8.6 0.3 5 26 598 619 595 620 0.93 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF347-207 - 840 1.9e-27 94.7 76.9 13 18 0.00014 0.076 12.8 0.2 5 26 654 675 651 676 0.92 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF347-207 - 840 1.9e-27 94.7 76.9 14 18 0.00039 0.21 11.4 0.4 5 25 682 702 680 704 0.91 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF347-207 - 840 1.9e-27 94.7 76.9 15 18 0.0052 2.8 7.8 0.2 6 26 711 731 708 732 0.90 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF347-207 - 840 1.9e-27 94.7 76.9 16 18 0.00029 0.16 11.8 0.2 5 26 738 759 736 760 0.93 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF347-207 - 840 1.9e-27 94.7 76.9 17 18 0.00041 0.22 11.3 0.1 5 26 766 787 763 788 0.93 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF347-207 - 840 1.9e-27 94.7 76.9 18 18 0.26 1.4e+02 2.3 0.2 9 26 795 812 793 813 0.90 zinc-finger C2H2-type KRAB PF01352.27 42 ZNF347-207 - 840 5.9e-26 89.9 0.2 1 1 2.6e-28 1.4e-25 88.6 0.2 2 41 8 47 7 47 0.98 KRAB box Zn-ribbon_8 PF09723.10 40 ZNF347-207 - 840 7e-24 83.7 95.3 1 16 0.046 25 5.1 0.2 6 16 290 300 262 309 0.69 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF347-207 - 840 7e-24 83.7 95.3 2 16 1.1e-05 0.0061 16.7 3.9 6 34 318 353 317 357 0.91 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF347-207 - 840 7e-24 83.7 95.3 3 16 2.4e-05 0.013 15.6 3.6 6 37 346 384 345 386 0.84 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF347-207 - 840 7e-24 83.7 95.3 4 16 0.0041 2.2 8.5 0.2 6 21 374 389 373 397 0.82 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF347-207 - 840 7e-24 83.7 95.3 5 16 0.00023 0.12 12.5 4.3 6 34 402 437 401 442 0.87 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF347-207 - 840 7e-24 83.7 95.3 6 16 0.0089 4.8 7.4 0.3 6 20 430 444 429 449 0.85 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF347-207 - 840 7e-24 83.7 95.3 7 16 1.6e-05 0.0087 16.2 2.5 6 36 458 495 457 498 0.89 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF347-207 - 840 7e-24 83.7 95.3 8 16 1.6e-05 0.0085 16.2 1.5 6 34 514 549 513 553 0.91 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF347-207 - 840 7e-24 83.7 95.3 9 16 0.025 13 6.0 0.2 6 20 542 556 541 561 0.84 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF347-207 - 840 7e-24 83.7 95.3 10 16 0.00013 0.068 13.3 4.2 6 34 570 605 569 608 0.87 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF347-207 - 840 7e-24 83.7 95.3 11 16 0.0061 3.3 7.9 0.5 6 16 598 608 597 624 0.82 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF347-207 - 840 7e-24 83.7 95.3 12 16 0.00019 0.1 12.7 4.2 6 35 654 690 653 693 0.82 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF347-207 - 840 7e-24 83.7 95.3 13 16 0.00011 0.062 13.4 4.0 6 34 682 717 681 723 0.89 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF347-207 - 840 7e-24 83.7 95.3 14 16 0.0023 1.2 9.3 0.2 6 21 710 725 708 732 0.85 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF347-207 - 840 7e-24 83.7 95.3 15 16 5.2e-05 0.028 14.5 3.7 6 35 738 774 737 777 0.86 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF347-207 - 840 7e-24 83.7 95.3 16 16 0.0027 1.5 9.0 0.8 6 22 766 788 765 801 0.71 Zinc ribbon domain zf-C2H2_6 PF13912.6 27 ZNF347-207 - 840 4.1e-18 64.9 149.8 1 18 0.0005 0.27 11.3 0.6 2 20 290 308 290 312 0.95 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF347-207 - 840 4.1e-18 64.9 149.8 2 18 0.00024 0.13 12.3 0.6 1 13 317 329 317 340 0.87 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF347-207 - 840 4.1e-18 64.9 149.8 3 18 0.0019 1.1 9.4 0.9 2 12 346 356 346 357 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF347-207 - 840 4.1e-18 64.9 149.8 4 18 0.0017 0.91 9.6 0.3 2 24 374 396 374 399 0.76 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF347-207 - 840 4.1e-18 64.9 149.8 5 18 0.0091 4.9 7.3 3.4 2 12 402 412 402 423 0.88 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF347-207 - 840 4.1e-18 64.9 149.8 6 18 0.0061 3.3 7.8 0.4 2 11 430 439 430 440 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF347-207 - 840 4.1e-18 64.9 149.8 7 18 0.00063 0.34 11.0 0.7 2 12 458 468 458 476 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF347-207 - 840 4.1e-18 64.9 149.8 8 18 0.00092 0.5 10.4 0.8 2 20 486 504 486 508 0.91 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF347-207 - 840 4.1e-18 64.9 149.8 9 18 0.0019 1.1 9.4 0.9 2 12 514 524 514 525 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF347-207 - 840 4.1e-18 64.9 149.8 10 18 0.00017 0.091 12.8 0.5 2 20 542 560 542 564 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF347-207 - 840 4.1e-18 64.9 149.8 11 18 0.016 8.6 6.5 4.2 2 12 570 580 570 591 0.89 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF347-207 - 840 4.1e-18 64.9 149.8 12 18 0.002 1.1 9.4 1.4 2 12 598 608 598 609 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF347-207 - 840 4.1e-18 64.9 149.8 13 18 0.022 12 6.1 4.8 2 12 654 664 654 675 0.85 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF347-207 - 840 4.1e-18 64.9 149.8 14 18 0.012 6.3 6.9 0.5 2 12 682 692 682 695 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF347-207 - 840 4.1e-18 64.9 149.8 15 18 0.00071 0.39 10.8 0.4 2 22 710 730 710 734 0.86 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF347-207 - 840 4.1e-18 64.9 149.8 16 18 0.016 8.6 6.5 4.2 2 12 738 748 738 759 0.89 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF347-207 - 840 4.1e-18 64.9 149.8 17 18 0.0049 2.7 8.1 0.7 2 12 766 776 766 778 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF347-207 - 840 4.1e-18 64.9 149.8 18 18 5.4 2.9e+03 -1.6 0.2 6 20 795 809 795 813 0.82 C2H2-type zinc finger XPA_N PF01286.18 32 ZNF347-207 - 840 7.5e-16 57.9 54.9 1 18 0.06 32 4.7 0.0 3 12 291 300 289 307 0.89 XPA protein N-terminal XPA_N PF01286.18 32 ZNF347-207 - 840 7.5e-16 57.9 54.9 2 18 0.061 33 4.6 0.1 3 16 319 333 317 336 0.74 XPA protein N-terminal XPA_N PF01286.18 32 ZNF347-207 - 840 7.5e-16 57.9 54.9 3 18 0.068 37 4.5 0.0 3 12 347 356 345 364 0.82 XPA protein N-terminal XPA_N PF01286.18 32 ZNF347-207 - 840 7.5e-16 57.9 54.9 4 18 0.045 25 5.0 0.1 3 11 375 383 373 386 0.90 XPA protein N-terminal XPA_N PF01286.18 32 ZNF347-207 - 840 7.5e-16 57.9 54.9 5 18 0.044 24 5.1 0.0 3 13 403 413 401 423 0.75 XPA protein N-terminal XPA_N PF01286.18 32 ZNF347-207 - 840 7.5e-16 57.9 54.9 6 18 0.035 19 5.4 0.1 3 12 431 440 429 441 0.89 XPA protein N-terminal XPA_N PF01286.18 32 ZNF347-207 - 840 7.5e-16 57.9 54.9 7 18 0.16 86 3.3 0.0 3 11 459 467 457 475 0.88 XPA protein N-terminal XPA_N PF01286.18 32 ZNF347-207 - 840 7.5e-16 57.9 54.9 8 18 0.035 19 5.4 0.1 3 11 487 495 485 504 0.86 XPA protein N-terminal XPA_N PF01286.18 32 ZNF347-207 - 840 7.5e-16 57.9 54.9 9 18 0.067 36 4.5 0.1 3 12 515 524 513 532 0.81 XPA protein N-terminal XPA_N PF01286.18 32 ZNF347-207 - 840 7.5e-16 57.9 54.9 10 18 0.072 39 4.4 0.0 3 12 543 552 541 556 0.89 XPA protein N-terminal XPA_N PF01286.18 32 ZNF347-207 - 840 7.5e-16 57.9 54.9 11 18 0.074 40 4.4 0.1 3 12 571 580 569 588 0.84 XPA protein N-terminal XPA_N PF01286.18 32 ZNF347-207 - 840 7.5e-16 57.9 54.9 12 18 0.0084 4.5 7.4 0.1 3 19 599 616 597 617 0.86 XPA protein N-terminal XPA_N PF01286.18 32 ZNF347-207 - 840 7.5e-16 57.9 54.9 13 18 0.074 40 4.4 0.1 3 12 655 664 653 672 0.84 XPA protein N-terminal XPA_N PF01286.18 32 ZNF347-207 - 840 7.5e-16 57.9 54.9 14 18 0.021 12 6.1 0.1 3 13 683 693 681 700 0.78 XPA protein N-terminal XPA_N PF01286.18 32 ZNF347-207 - 840 7.5e-16 57.9 54.9 15 18 0.19 1e+02 3.0 0.0 3 12 711 720 709 727 0.90 XPA protein N-terminal XPA_N PF01286.18 32 ZNF347-207 - 840 7.5e-16 57.9 54.9 16 18 0.074 40 4.4 0.1 3 12 739 748 737 756 0.84 XPA protein N-terminal XPA_N PF01286.18 32 ZNF347-207 - 840 7.5e-16 57.9 54.9 17 18 0.011 6.1 7.0 0.1 3 13 767 777 765 784 0.79 XPA protein N-terminal XPA_N PF01286.18 32 ZNF347-207 - 840 7.5e-16 57.9 54.9 18 18 2.8 1.5e+03 -0.7 0.2 6 12 795 801 794 803 0.88 XPA protein N-terminal C1_1 PF00130.22 53 ZNF347-207 - 840 3.6e-13 49.2 61.7 1 15 0.00098 0.53 10.2 0.7 1 37 280 326 280 330 0.86 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF347-207 - 840 3.6e-13 49.2 61.7 2 15 0.0083 4.5 7.2 2.2 2 37 309 354 308 358 0.78 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF347-207 - 840 3.6e-13 49.2 61.7 3 15 0.0056 3.1 7.8 1.6 6 36 341 381 335 383 0.79 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF347-207 - 840 3.6e-13 49.2 61.7 4 15 0.0016 0.86 9.5 0.5 9 37 371 410 360 414 0.83 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF347-207 - 840 3.6e-13 49.2 61.7 5 15 0.00017 0.091 12.7 0.8 2 37 420 466 420 470 0.91 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF347-207 - 840 3.6e-13 49.2 61.7 6 15 0.016 8.8 6.3 2.2 6 36 452 493 448 498 0.77 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF347-207 - 840 3.6e-13 49.2 61.7 7 15 0.0023 1.2 9.0 1.7 1 37 476 522 476 526 0.86 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF347-207 - 840 3.6e-13 49.2 61.7 8 15 0.016 8.5 6.4 1.9 1 35 504 548 504 551 0.73 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF347-207 - 840 3.6e-13 49.2 61.7 9 15 0.025 14 5.7 1.4 10 37 540 578 528 579 0.79 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF347-207 - 840 3.6e-13 49.2 61.7 10 15 0.0017 0.95 9.4 1.7 1 38 560 607 560 611 0.82 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF347-207 - 840 3.6e-13 49.2 61.7 11 15 0.086 47 4.0 0.2 9 23 595 609 584 619 0.76 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF347-207 - 840 3.6e-13 49.2 61.7 12 15 0.0013 0.71 9.8 0.7 1 37 644 690 644 699 0.84 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF347-207 - 840 3.6e-13 49.2 61.7 13 15 0.00059 0.32 10.9 0.8 2 37 701 746 700 750 0.86 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF347-207 - 840 3.6e-13 49.2 61.7 14 15 0.0044 2.4 8.1 2.4 4 37 731 774 728 778 0.81 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF347-207 - 840 3.6e-13 49.2 61.7 15 15 0.072 39 4.2 0.3 9 23 763 777 752 790 0.75 Phorbol esters/diacylglycerol binding domain (C1 domain) zf_UBZ PF18439.1 32 ZNF347-207 - 840 1.2e-12 47.2 73.2 1 19 5 2.7e+03 -2.0 0.1 8 21 267 281 267 281 0.89 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF347-207 - 840 1.2e-12 47.2 73.2 2 19 0.12 64 3.3 0.1 3 20 290 308 288 309 0.80 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF347-207 - 840 1.2e-12 47.2 73.2 3 19 0.0015 0.83 9.3 0.2 2 21 317 337 316 337 0.91 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF347-207 - 840 1.2e-12 47.2 73.2 4 19 0.048 26 4.5 0.1 3 14 346 357 344 361 0.83 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF347-207 - 840 1.2e-12 47.2 73.2 5 19 0.11 58 3.4 0.1 3 12 374 383 372 393 0.83 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF347-207 - 840 1.2e-12 47.2 73.2 6 19 0.037 20 4.9 0.1 3 15 402 414 400 420 0.82 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF347-207 - 840 1.2e-12 47.2 73.2 7 19 0.15 81 2.9 0.1 3 12 430 439 428 446 0.87 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF347-207 - 840 1.2e-12 47.2 73.2 8 19 0.075 41 3.9 0.2 3 13 458 468 456 477 0.80 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF347-207 - 840 1.2e-12 47.2 73.2 9 19 0.013 7 6.3 0.1 3 21 486 505 484 505 0.89 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF347-207 - 840 1.2e-12 47.2 73.2 10 19 0.027 14 5.3 0.2 3 16 514 528 512 533 0.78 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF347-207 - 840 1.2e-12 47.2 73.2 11 19 0.016 8.9 6.0 0.0 3 21 542 561 540 561 0.88 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF347-207 - 840 1.2e-12 47.2 73.2 12 19 0.039 21 4.8 0.1 3 15 570 582 568 588 0.83 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF347-207 - 840 1.2e-12 47.2 73.2 13 19 0.052 28 4.4 0.1 3 14 598 609 596 616 0.83 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF347-207 - 840 1.2e-12 47.2 73.2 14 19 0.039 21 4.8 0.1 3 15 654 666 652 672 0.83 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF347-207 - 840 1.2e-12 47.2 73.2 15 19 0.0042 2.3 7.9 0.1 3 20 682 700 680 701 0.84 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF347-207 - 840 1.2e-12 47.2 73.2 16 19 0.0094 5.1 6.8 0.1 3 21 710 729 708 729 0.89 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF347-207 - 840 1.2e-12 47.2 73.2 17 19 0.039 21 4.8 0.1 3 15 738 750 736 756 0.83 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF347-207 - 840 1.2e-12 47.2 73.2 18 19 0.0051 2.7 7.6 0.1 3 20 766 784 764 785 0.84 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF347-207 - 840 1.2e-12 47.2 73.2 19 19 3.7 2e+03 -1.5 0.1 7 20 795 809 795 810 0.78 Ubiquitin-Binding Zinc Finger zinc_ribbon_15 PF17032.5 86 ZNF347-207 - 840 4.9e-11 43.2 74.1 1 13 0.0089 4.8 8.0 0.5 39 77 263 301 253 308 0.87 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF347-207 - 840 4.9e-11 43.2 74.1 2 13 0.00055 0.3 11.9 3.7 33 79 313 359 302 364 0.87 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF347-207 - 840 4.9e-11 43.2 74.1 3 13 0.0016 0.86 10.4 1.9 35 79 371 415 362 419 0.87 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF347-207 - 840 4.9e-11 43.2 74.1 4 13 0.00092 0.5 11.1 0.4 29 78 421 470 417 476 0.90 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF347-207 - 840 4.9e-11 43.2 74.1 5 13 0.0027 1.5 9.7 0.8 33 78 453 498 441 504 0.82 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF347-207 - 840 4.9e-11 43.2 74.1 6 13 0.0038 2.1 9.2 2.0 35 78 483 526 476 529 0.84 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF347-207 - 840 4.9e-11 43.2 74.1 7 13 0.025 13 6.6 5.9 30 74 508 550 487 557 0.75 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF347-207 - 840 4.9e-11 43.2 74.1 8 13 0.0017 0.91 10.3 1.4 34 78 566 610 554 616 0.83 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF347-207 - 840 4.9e-11 43.2 74.1 9 13 0.00093 0.5 11.1 1.8 34 78 650 694 624 699 0.86 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF347-207 - 840 4.9e-11 43.2 74.1 10 13 0.0018 0.95 10.3 1.6 36 75 680 719 670 724 0.85 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF347-207 - 840 4.9e-11 43.2 74.1 11 13 0.0026 1.4 9.7 2.0 32 79 704 751 699 758 0.86 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF347-207 - 840 4.9e-11 43.2 74.1 12 13 0.0026 1.4 9.7 2.4 33 78 733 778 724 784 0.85 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF347-207 - 840 4.9e-11 43.2 74.1 13 13 0.38 2.1e+02 2.8 0.5 35 68 763 796 758 811 0.67 zinc-ribbon family ZZ PF00569.17 45 ZNF347-207 - 840 5.5e-07 29.3 74.1 1 17 1 5.6e+02 0.5 0.2 3 12 288 297 286 304 0.75 Zinc finger, ZZ type ZZ PF00569.17 45 ZNF347-207 - 840 5.5e-07 29.3 74.1 2 17 0.041 22 4.9 0.2 3 12 316 325 314 330 0.84 Zinc finger, ZZ type ZZ PF00569.17 45 ZNF347-207 - 840 5.5e-07 29.3 74.1 3 17 0.072 39 4.2 0.2 3 12 344 353 342 360 0.82 Zinc finger, ZZ type ZZ PF00569.17 45 ZNF347-207 - 840 5.5e-07 29.3 74.1 4 17 0.027 14 5.5 0.1 3 15 372 382 370 393 0.77 Zinc finger, ZZ type ZZ PF00569.17 45 ZNF347-207 - 840 5.5e-07 29.3 74.1 5 17 0.081 44 4.0 0.2 4 12 401 409 399 415 0.82 Zinc finger, ZZ type ZZ PF00569.17 45 ZNF347-207 - 840 5.5e-07 29.3 74.1 6 17 0.023 12 5.8 0.1 3 19 428 442 426 448 0.78 Zinc finger, ZZ type ZZ PF00569.17 45 ZNF347-207 - 840 5.5e-07 29.3 74.1 7 17 0.12 68 3.4 0.3 4 12 457 465 455 472 0.83 Zinc finger, ZZ type ZZ PF00569.17 45 ZNF347-207 - 840 5.5e-07 29.3 74.1 8 17 0.028 15 5.5 0.2 3 19 484 496 482 501 0.77 Zinc finger, ZZ type ZZ PF00569.17 45 ZNF347-207 - 840 5.5e-07 29.3 74.1 9 17 0.072 39 4.2 0.2 3 12 512 521 510 527 0.82 Zinc finger, ZZ type ZZ PF00569.17 45 ZNF347-207 - 840 5.5e-07 29.3 74.1 10 17 0.12 66 3.4 0.1 5 13 542 550 539 559 0.74 Zinc finger, ZZ type ZZ PF00569.17 45 ZNF347-207 - 840 5.5e-07 29.3 74.1 11 17 0.072 39 4.2 0.2 3 12 568 577 566 583 0.82 Zinc finger, ZZ type ZZ PF00569.17 45 ZNF347-207 - 840 5.5e-07 29.3 74.1 12 17 0.059 32 4.4 0.2 3 12 596 605 594 613 0.80 Zinc finger, ZZ type ZZ PF00569.17 45 ZNF347-207 - 840 5.5e-07 29.3 74.1 13 17 0.072 39 4.2 0.2 3 12 652 661 650 667 0.82 Zinc finger, ZZ type ZZ PF00569.17 45 ZNF347-207 - 840 5.5e-07 29.3 74.1 14 17 0.086 47 3.9 0.1 3 12 680 689 679 694 0.80 Zinc finger, ZZ type ZZ PF00569.17 45 ZNF347-207 - 840 5.5e-07 29.3 74.1 15 17 0.047 25 4.8 0.1 4 15 709 720 707 725 0.78 Zinc finger, ZZ type ZZ PF00569.17 45 ZNF347-207 - 840 5.5e-07 29.3 74.1 16 17 0.051 28 4.6 0.2 3 12 736 745 734 751 0.82 Zinc finger, ZZ type ZZ PF00569.17 45 ZNF347-207 - 840 5.5e-07 29.3 74.1 17 17 0.05 27 4.7 0.2 3 12 764 773 762 778 0.81 Zinc finger, ZZ type # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF347-207.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF347-207.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF347-207.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF347-207.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF347-207.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:04:50 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF347-208.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF347-208.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF347-208.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF347-208.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF347-208.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:04:51 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZNF350-201 - 532 2.9e-56 185.5 55.6 1 11 6 4.7e+03 -1.7 0.0 5 10 169 174 168 181 0.80 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF350-201 - 532 2.9e-56 185.5 55.6 2 11 0.0087 6.8 7.3 2.8 5 24 196 215 195 217 0.77 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF350-201 - 532 2.9e-56 185.5 55.6 3 11 3e-09 2.3e-06 27.7 0.8 2 25 221 244 221 245 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF350-201 - 532 2.9e-56 185.5 55.6 4 11 7.8e-13 6.1e-10 39.1 0.7 2 25 249 272 248 273 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF350-201 - 532 2.9e-56 185.5 55.6 5 11 1.1e-08 8.7e-06 25.9 0.2 2 24 277 299 276 301 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF350-201 - 532 2.9e-56 185.5 55.6 6 11 3.3e-08 2.6e-05 24.4 0.0 1 24 304 327 304 329 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF350-201 - 532 2.9e-56 185.5 55.6 7 11 8.3e-09 6.5e-06 26.3 0.9 4 24 335 355 333 357 0.90 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF350-201 - 532 2.9e-56 185.5 55.6 8 11 2.1e-12 1.6e-09 37.7 0.2 2 26 361 385 360 385 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF350-201 - 532 2.9e-56 185.5 55.6 9 11 1.4e-08 1.1e-05 25.6 0.2 4 25 391 412 388 413 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF350-201 - 532 2.9e-56 185.5 55.6 10 11 0.024 19 5.9 0.2 2 13 417 428 417 435 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF350-201 - 532 2.9e-56 185.5 55.6 11 11 4.1 3.2e+03 -1.2 0.1 3 11 440 448 440 454 0.83 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZNF350-201 - 532 6.9e-42 139.6 51.3 1 8 1.2e-06 0.00094 19.5 0.5 1 23 206 228 206 228 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF350-201 - 532 6.9e-42 139.6 51.3 2 8 3.5e-07 0.00028 21.2 3.9 1 23 234 256 234 256 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF350-201 - 532 6.9e-42 139.6 51.3 3 8 2.7e-06 0.0021 18.4 0.4 1 23 262 284 262 284 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF350-201 - 532 6.9e-42 139.6 51.3 4 8 3.7e-08 2.9e-05 24.3 0.0 1 23 290 312 290 312 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF350-201 - 532 6.9e-42 139.6 51.3 5 8 1.8e-06 0.0014 19.0 0.9 1 23 318 340 318 340 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF350-201 - 532 6.9e-42 139.6 51.3 6 8 1.9e-08 1.5e-05 25.2 1.3 1 23 346 368 346 368 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF350-201 - 532 6.9e-42 139.6 51.3 7 8 1e-08 8e-06 26.0 0.5 1 23 374 396 374 396 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF350-201 - 532 6.9e-42 139.6 51.3 8 8 6.7e-06 0.0052 17.2 1.0 3 23 404 424 402 424 0.97 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZNF350-201 - 532 1.5e-23 81.4 52.3 1 8 0.0015 1.2 10.2 0.8 1 23 206 228 206 229 0.90 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF350-201 - 532 1.5e-23 81.4 52.3 2 8 0.00022 0.18 12.8 3.1 1 23 234 256 234 257 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF350-201 - 532 1.5e-23 81.4 52.3 3 8 5.6e-06 0.0044 17.7 0.5 1 23 262 284 262 285 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF350-201 - 532 1.5e-23 81.4 52.3 4 8 8.2e-05 0.064 14.1 0.1 1 23 290 312 290 313 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF350-201 - 532 1.5e-23 81.4 52.3 5 8 0.00033 0.26 12.2 0.8 1 23 318 340 318 341 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF350-201 - 532 1.5e-23 81.4 52.3 6 8 4.7e-05 0.037 14.9 1.6 1 23 346 368 346 369 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF350-201 - 532 1.5e-23 81.4 52.3 7 8 4.1e-07 0.00032 21.3 0.7 1 23 374 396 374 397 0.97 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF350-201 - 532 1.5e-23 81.4 52.3 8 8 0.0012 0.96 10.5 1.1 2 23 403 424 402 425 0.92 C2H2-type zinc finger KRAB PF01352.27 42 ZNF350-201 - 532 2.9e-23 81.2 1.7 1 2 4.5e-26 3.5e-23 81.0 0.4 1 42 7 48 7 48 0.98 KRAB box KRAB PF01352.27 42 ZNF350-201 - 532 2.9e-23 81.2 1.7 2 2 7.7 6e+03 -3.0 0.0 29 33 449 453 447 455 0.84 KRAB box zf-C2H2_6 PF13912.6 27 ZNF350-201 - 532 6.7e-11 41.9 54.6 1 8 0.0013 1 9.4 0.7 1 11 205 215 205 216 0.95 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF350-201 - 532 6.7e-11 41.9 54.6 2 8 0.0039 3.1 7.9 2.3 2 24 234 256 234 259 0.90 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF350-201 - 532 6.7e-11 41.9 54.6 3 8 0.0012 0.96 9.5 0.5 2 24 262 284 262 287 0.78 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF350-201 - 532 6.7e-11 41.9 54.6 4 8 0.005 3.9 7.6 0.2 2 11 290 299 290 300 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF350-201 - 532 6.7e-11 41.9 54.6 5 8 0.015 12 6.1 0.9 2 11 318 327 318 340 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF350-201 - 532 6.7e-11 41.9 54.6 6 8 0.031 24 5.0 1.3 2 10 346 354 346 368 0.88 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF350-201 - 532 6.7e-11 41.9 54.6 7 8 5.6e-07 0.00044 20.2 0.9 2 24 374 396 374 399 0.95 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF350-201 - 532 6.7e-11 41.9 54.6 8 8 0.00091 0.71 9.9 1.7 2 24 402 424 402 427 0.89 C2H2-type zinc finger # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF350-201.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF350-201.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF350-201.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF350-201.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF350-201.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:04:51 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF350-202.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF350-202.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF350-202.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF350-202.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF350-202.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:04:51 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF350-203.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF350-203.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF350-203.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF350-203.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF350-203.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:04:52 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF350-204.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF350-204.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF350-204.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF350-204.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF350-204.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:04:52 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF350-205.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF350-205.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF350-205.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF350-205.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF350-205.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:04:52 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF350-206.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF350-206.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF350-206.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF350-206.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF350-206.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:04:53 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF350-207.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF350-207.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF350-207.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF350-207.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF350-207.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:04:53 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF350-208.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF350-208.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF350-208.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF350-208.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF350-208.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:04:53 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF350-209.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF350-209.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF350-209.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF350-209.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF350-209.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:04:54 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZNF35-201 - 367 1.2e-80 262.6 70.4 1 12 9.2e-06 0.0057 17.0 0.3 9 25 56 72 54 73 0.87 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF35-201 - 367 1.2e-80 262.6 70.4 2 12 1.4e-11 8.6e-09 35.4 0.2 1 24 76 99 76 101 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF35-201 - 367 1.2e-80 262.6 70.4 3 12 8.6e-12 5.3e-09 36.1 0.1 1 25 104 128 104 129 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF35-201 - 367 1.2e-80 262.6 70.4 4 12 4.6e-06 0.0029 18.0 1.1 1 25 132 156 132 157 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF35-201 - 367 1.2e-80 262.6 70.4 5 12 8.6e-07 0.00053 20.3 2.2 2 26 161 185 160 185 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF35-201 - 367 1.2e-80 262.6 70.4 6 12 2.5e-10 1.6e-07 31.5 0.1 1 25 188 212 188 213 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF35-201 - 367 1.2e-80 262.6 70.4 7 12 1.1e-11 6.9e-09 35.7 1.2 1 25 216 240 216 241 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF35-201 - 367 1.2e-80 262.6 70.4 8 12 2.7e-09 1.7e-06 28.2 0.3 2 25 245 268 244 269 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF35-201 - 367 1.2e-80 262.6 70.4 9 12 3.4e-07 0.00021 21.6 0.1 5 25 276 296 273 297 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF35-201 - 367 1.2e-80 262.6 70.4 10 12 1.3e-09 7.7e-07 29.3 0.2 5 25 304 324 300 325 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF35-201 - 367 1.2e-80 262.6 70.4 11 12 5.1e-11 3.2e-08 33.6 0.1 2 24 329 351 328 353 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF35-201 - 367 1.2e-80 262.6 70.4 12 12 4.6 2.8e+03 -1.0 4.6 1 12 356 367 356 367 0.89 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZNF35-201 - 367 3.5e-75 244.5 72.0 1 11 5.2e-09 3.2e-06 27.3 0.1 1 23 62 84 62 84 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF35-201 - 367 3.5e-75 244.5 72.0 2 11 3e-09 1.8e-06 28.1 0.2 1 23 90 112 90 112 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF35-201 - 367 3.5e-75 244.5 72.0 3 11 7.9e-10 4.9e-07 29.9 0.5 1 23 118 140 118 140 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF35-201 - 367 3.5e-75 244.5 72.0 4 11 1.7e-08 1.1e-05 25.6 0.9 1 23 146 168 146 168 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF35-201 - 367 3.5e-75 244.5 72.0 5 11 9.7e-11 6e-08 32.7 0.4 1 23 174 196 174 196 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF35-201 - 367 3.5e-75 244.5 72.0 6 11 2e-09 1.2e-06 28.6 0.1 1 23 202 224 202 224 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF35-201 - 367 3.5e-75 244.5 72.0 7 11 1.9e-06 0.0012 19.2 2.9 1 23 230 252 230 252 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF35-201 - 367 3.5e-75 244.5 72.0 8 11 4.9e-08 3e-05 24.2 0.6 1 23 258 280 258 280 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF35-201 - 367 3.5e-75 244.5 72.0 9 11 1.2e-06 0.00077 19.8 1.1 1 23 286 308 286 308 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF35-201 - 367 3.5e-75 244.5 72.0 10 11 3.1e-10 1.9e-07 31.2 1.2 1 23 314 336 314 336 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF35-201 - 367 3.5e-75 244.5 72.0 11 11 7.3e-08 4.5e-05 23.7 2.7 1 23 342 364 342 364 0.99 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZNF35-201 - 367 8.7e-38 125.7 72.6 1 11 1.5e-05 0.0093 16.7 0.2 1 23 62 84 62 85 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF35-201 - 367 8.7e-38 125.7 72.6 2 11 0.00026 0.16 12.9 0.3 1 23 90 112 90 113 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF35-201 - 367 8.7e-38 125.7 72.6 3 11 2.9e-05 0.018 15.8 0.6 1 23 118 140 118 141 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF35-201 - 367 8.7e-38 125.7 72.6 4 11 1.1e-05 0.0068 17.2 0.8 1 23 146 168 146 169 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF35-201 - 367 8.7e-38 125.7 72.6 5 11 6.1e-06 0.0038 17.9 0.3 1 23 174 196 174 197 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF35-201 - 367 8.7e-38 125.7 72.6 6 11 4.2e-05 0.026 15.3 0.1 1 23 202 224 202 225 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF35-201 - 367 8.7e-38 125.7 72.6 7 11 2.7e-05 0.017 15.9 3.1 1 23 230 252 230 253 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF35-201 - 367 8.7e-38 125.7 72.6 8 11 0.00027 0.17 12.8 1.0 3 23 260 280 258 281 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF35-201 - 367 8.7e-38 125.7 72.6 9 11 5.3e-05 0.033 15.0 1.0 1 23 286 308 286 309 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF35-201 - 367 8.7e-38 125.7 72.6 10 11 1.5e-05 0.0094 16.7 0.8 1 23 314 336 314 337 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF35-201 - 367 8.7e-38 125.7 72.6 11 11 1.5e-05 0.0093 16.7 1.9 1 23 342 364 342 365 0.96 C2H2-type zinc finger Zn-ribbon_8 PF09723.10 40 ZNF35-201 - 367 1.3e-15 57.2 52.3 1 11 6.2 3.8e+03 -1.9 0.0 21 34 28 41 25 44 0.67 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF35-201 - 367 1.3e-15 57.2 52.3 2 11 0.0005 0.31 11.2 1.3 6 34 62 97 61 102 0.90 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF35-201 - 367 1.3e-15 57.2 52.3 3 11 0.00017 0.1 12.7 3.2 6 35 90 126 89 129 0.91 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF35-201 - 367 1.3e-15 57.2 52.3 4 11 0.00019 0.12 12.6 2.6 6 34 118 153 117 156 0.91 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF35-201 - 367 1.3e-15 57.2 52.3 5 11 0.081 50 4.1 1.1 6 17 146 160 144 173 0.71 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF35-201 - 367 1.3e-15 57.2 52.3 6 11 2.1e-06 0.0013 18.8 1.9 6 36 174 211 173 215 0.90 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF35-201 - 367 1.3e-15 57.2 52.3 7 11 1.7e-05 0.01 15.9 3.1 6 34 202 237 200 240 0.91 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF35-201 - 367 1.3e-15 57.2 52.3 8 11 4.2e-06 0.0026 17.8 4.5 6 36 230 267 228 271 0.91 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF35-201 - 367 1.3e-15 57.2 52.3 9 11 2.1e-06 0.0013 18.8 2.2 6 38 286 325 285 327 0.91 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF35-201 - 367 1.3e-15 57.2 52.3 10 11 0.00017 0.1 12.7 4.7 6 34 314 349 313 352 0.91 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF35-201 - 367 1.3e-15 57.2 52.3 11 11 0.031 19 5.4 0.7 6 15 342 351 339 359 0.89 Zinc ribbon domain zf-C2H2_6 PF13912.6 27 ZNF35-201 - 367 1.3e-13 50.6 76.1 1 11 0.0035 2.2 8.4 0.2 2 12 62 72 62 84 0.88 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF35-201 - 367 1.3e-13 50.6 76.1 2 11 0.0041 2.6 8.2 0.9 2 11 90 99 90 100 0.96 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF35-201 - 367 1.3e-13 50.6 76.1 3 11 0.006 3.7 7.7 1.0 2 22 118 138 118 141 0.78 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF35-201 - 367 1.3e-13 50.6 76.1 4 11 0.002 1.2 9.2 1.3 2 13 146 157 145 168 0.84 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF35-201 - 367 1.3e-13 50.6 76.1 5 11 4.9e-05 0.03 14.3 1.0 2 22 174 194 173 198 0.86 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF35-201 - 367 1.3e-13 50.6 76.1 6 11 0.0092 5.7 7.1 0.1 2 24 202 224 202 227 0.92 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF35-201 - 367 1.3e-13 50.6 76.1 7 11 0.0011 0.67 10.0 2.3 2 12 230 240 230 254 0.81 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF35-201 - 367 1.3e-13 50.6 76.1 8 11 0.0038 2.4 8.3 1.1 2 14 258 270 258 281 0.78 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF35-201 - 367 1.3e-13 50.6 76.1 9 11 0.0052 3.2 7.9 0.5 2 11 286 295 286 296 0.92 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF35-201 - 367 1.3e-13 50.6 76.1 10 11 0.0003 0.18 11.8 0.8 2 24 314 336 314 339 0.92 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF35-201 - 367 1.3e-13 50.6 76.1 11 11 0.02 12 6.0 1.8 2 24 342 364 342 366 0.93 C2H2-type zinc finger XPA_N PF01286.18 32 ZNF35-201 - 367 5.4e-11 42.3 50.7 1 11 0.12 75 3.5 0.2 3 14 63 74 61 75 0.83 XPA protein N-terminal XPA_N PF01286.18 32 ZNF35-201 - 367 5.4e-11 42.3 50.7 2 11 0.004 2.5 8.2 0.2 3 14 91 102 89 103 0.92 XPA protein N-terminal XPA_N PF01286.18 32 ZNF35-201 - 367 5.4e-11 42.3 50.7 3 11 0.0074 4.6 7.4 0.1 3 14 119 130 117 134 0.91 XPA protein N-terminal XPA_N PF01286.18 32 ZNF35-201 - 367 5.4e-11 42.3 50.7 4 11 0.014 8.9 6.5 0.4 3 14 147 158 146 165 0.87 XPA protein N-terminal XPA_N PF01286.18 32 ZNF35-201 - 367 5.4e-11 42.3 50.7 5 11 0.0041 2.5 8.2 0.3 3 14 175 186 174 187 0.91 XPA protein N-terminal XPA_N PF01286.18 32 ZNF35-201 - 367 5.4e-11 42.3 50.7 6 11 0.016 9.8 6.3 0.3 4 14 204 214 202 215 0.93 XPA protein N-terminal XPA_N PF01286.18 32 ZNF35-201 - 367 5.4e-11 42.3 50.7 7 11 0.042 26 5.0 2.0 3 11 231 239 229 241 0.89 XPA protein N-terminal XPA_N PF01286.18 32 ZNF35-201 - 367 5.4e-11 42.3 50.7 8 11 0.019 12 6.1 0.1 3 12 259 268 257 271 0.88 XPA protein N-terminal XPA_N PF01286.18 32 ZNF35-201 - 367 5.4e-11 42.3 50.7 9 11 0.0013 0.83 9.8 0.3 3 16 287 301 285 304 0.76 XPA protein N-terminal XPA_N PF01286.18 32 ZNF35-201 - 367 5.4e-11 42.3 50.7 10 11 0.014 8.6 6.5 0.1 3 12 315 324 313 327 0.89 XPA protein N-terminal XPA_N PF01286.18 32 ZNF35-201 - 367 5.4e-11 42.3 50.7 11 11 0.043 27 4.9 0.0 3 18 343 359 341 363 0.76 XPA protein N-terminal zf_UBZ PF18439.1 32 ZNF35-201 - 367 1.2e-09 37.5 44.4 1 11 0.041 25 4.5 0.0 3 15 62 74 60 81 0.84 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF35-201 - 367 1.2e-09 37.5 44.4 2 11 0.062 39 4.0 0.1 3 15 90 102 88 109 0.82 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF35-201 - 367 1.2e-09 37.5 44.4 3 11 0.0016 0.98 9.1 0.1 3 15 118 130 116 137 0.78 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF35-201 - 367 1.2e-09 37.5 44.4 4 11 0.016 10 5.8 0.2 2 20 145 164 144 165 0.84 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF35-201 - 367 1.2e-09 37.5 44.4 5 11 0.016 10 5.8 0.6 2 14 173 185 172 193 0.83 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF35-201 - 367 1.2e-09 37.5 44.4 6 11 0.064 39 3.9 0.0 3 15 202 214 200 221 0.82 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF35-201 - 367 1.2e-09 37.5 44.4 7 11 0.014 8.4 6.1 0.6 3 14 230 241 228 248 0.87 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF35-201 - 367 1.2e-09 37.5 44.4 8 11 0.0063 3.9 7.2 0.1 3 13 258 268 256 271 0.87 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF35-201 - 367 1.2e-09 37.5 44.4 9 11 0.018 11 5.7 0.3 3 14 286 297 285 302 0.85 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF35-201 - 367 1.2e-09 37.5 44.4 10 11 0.013 7.7 6.2 0.1 3 13 314 324 312 333 0.80 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF35-201 - 367 1.2e-09 37.5 44.4 11 11 0.021 13 5.5 0.1 3 15 342 354 340 361 0.80 Ubiquitin-Binding Zinc Finger C1_4 PF07975.12 55 ZNF35-201 - 367 2.9e-09 37.0 52.6 1 9 0.01 6.5 7.1 0.0 8 49 44 85 35 87 0.85 TFIIH C1-like domain C1_4 PF07975.12 55 ZNF35-201 - 367 2.9e-09 37.0 52.6 2 9 0.00067 0.41 10.9 1.8 1 49 63 113 63 116 0.89 TFIIH C1-like domain C1_4 PF07975.12 55 ZNF35-201 - 367 2.9e-09 37.0 52.6 3 9 0.00054 0.33 11.2 2.8 1 49 91 141 91 143 0.90 TFIIH C1-like domain C1_4 PF07975.12 55 ZNF35-201 - 367 2.9e-09 37.0 52.6 4 9 0.0035 2.2 8.6 4.7 2 47 120 167 119 169 0.80 TFIIH C1-like domain C1_4 PF07975.12 55 ZNF35-201 - 367 2.9e-09 37.0 52.6 5 9 0.00017 0.1 12.8 6.5 1 49 147 197 147 199 0.88 TFIIH C1-like domain C1_4 PF07975.12 55 ZNF35-201 - 367 2.9e-09 37.0 52.6 6 9 0.00089 0.55 10.5 4.0 2 49 204 253 203 255 0.86 TFIIH C1-like domain C1_4 PF07975.12 55 ZNF35-201 - 367 2.9e-09 37.0 52.6 7 9 0.08 49 4.3 1.0 22 49 254 281 249 283 0.77 TFIIH C1-like domain C1_4 PF07975.12 55 ZNF35-201 - 367 2.9e-09 37.0 52.6 8 9 0.036 22 5.4 6.8 2 49 260 309 259 311 0.84 TFIIH C1-like domain C1_4 PF07975.12 55 ZNF35-201 - 367 2.9e-09 37.0 52.6 9 9 0.0026 1.6 9.0 0.9 1 36 315 352 313 365 0.78 TFIIH C1-like domain CpXC PF14353.6 118 ZNF35-201 - 367 5.6e-08 32.8 42.4 1 10 0.036 22 5.1 0.0 38 58 62 82 59 85 0.90 CpXC protein CpXC PF14353.6 118 ZNF35-201 - 367 5.6e-08 32.8 42.4 2 10 0.031 19 5.3 0.1 38 58 90 110 86 115 0.90 CpXC protein CpXC PF14353.6 118 ZNF35-201 - 367 5.6e-08 32.8 42.4 3 10 0.022 13 5.8 0.1 38 59 118 139 114 143 0.88 CpXC protein CpXC PF14353.6 118 ZNF35-201 - 367 5.6e-08 32.8 42.4 4 10 0.062 38 4.3 0.2 37 58 145 166 141 171 0.87 CpXC protein CpXC PF14353.6 118 ZNF35-201 - 367 5.6e-08 32.8 42.4 5 10 0.016 9.6 6.3 0.1 38 58 174 194 170 198 0.88 CpXC protein CpXC PF14353.6 118 ZNF35-201 - 367 5.6e-08 32.8 42.4 6 10 0.0056 3.4 7.7 0.1 38 60 202 224 199 226 0.91 CpXC protein CpXC PF14353.6 118 ZNF35-201 - 367 5.6e-08 32.8 42.4 7 10 0.15 93 3.1 0.4 38 58 230 250 228 255 0.82 CpXC protein CpXC PF14353.6 118 ZNF35-201 - 367 5.6e-08 32.8 42.4 8 10 0.071 44 4.2 3.9 29 58 278 306 258 312 0.79 CpXC protein CpXC PF14353.6 118 ZNF35-201 - 367 5.6e-08 32.8 42.4 9 10 0.01 6.3 6.9 0.1 38 60 314 336 307 338 0.90 CpXC protein CpXC PF14353.6 118 ZNF35-201 - 367 5.6e-08 32.8 42.4 10 10 0.062 39 4.3 0.1 38 59 342 363 340 366 0.85 CpXC protein # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF35-201.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF35-201.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF35-201.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF35-201.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF35-201.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:04:54 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZNF35-202 - 527 2.1e-78 255.5 70.4 1 12 9.8e-06 0.0088 16.4 0.3 9 25 216 232 214 233 0.87 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF35-202 - 527 2.1e-78 255.5 70.4 2 12 1.5e-11 1.3e-08 34.8 0.2 1 24 236 259 236 261 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF35-202 - 527 2.1e-78 255.5 70.4 3 12 9.3e-12 8.3e-09 35.5 0.1 1 25 264 288 264 289 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF35-202 - 527 2.1e-78 255.5 70.4 4 12 5e-06 0.0045 17.4 1.1 1 25 292 316 292 317 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF35-202 - 527 2.1e-78 255.5 70.4 5 12 9.2e-07 0.00083 19.7 2.2 2 26 321 345 320 345 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF35-202 - 527 2.1e-78 255.5 70.4 6 12 2.7e-10 2.4e-07 30.8 0.1 1 25 348 372 348 373 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF35-202 - 527 2.1e-78 255.5 70.4 7 12 1.2e-11 1.1e-08 35.1 1.2 1 25 376 400 376 401 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF35-202 - 527 2.1e-78 255.5 70.4 8 12 2.9e-09 2.6e-06 27.6 0.3 2 25 405 428 404 429 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF35-202 - 527 2.1e-78 255.5 70.4 9 12 3.6e-07 0.00033 21.0 0.1 5 25 436 456 433 457 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF35-202 - 527 2.1e-78 255.5 70.4 10 12 1.3e-09 1.2e-06 28.7 0.2 5 25 464 484 460 485 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF35-202 - 527 2.1e-78 255.5 70.4 11 12 5.5e-11 4.9e-08 33.0 0.1 2 24 489 511 488 513 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF35-202 - 527 2.1e-78 255.5 70.4 12 12 4.7 4.3e+03 -1.5 4.6 1 12 516 527 516 527 0.89 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZNF35-202 - 527 4.5e-73 237.8 72.0 1 11 5.5e-09 5e-06 26.7 0.1 1 23 222 244 222 244 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF35-202 - 527 4.5e-73 237.8 72.0 2 11 3.2e-09 2.8e-06 27.4 0.2 1 23 250 272 250 272 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF35-202 - 527 4.5e-73 237.8 72.0 3 11 8.4e-10 7.6e-07 29.3 0.5 1 23 278 300 278 300 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF35-202 - 527 4.5e-73 237.8 72.0 4 11 1.9e-08 1.7e-05 25.0 0.9 1 23 306 328 306 328 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF35-202 - 527 4.5e-73 237.8 72.0 5 11 1e-10 9.3e-08 32.1 0.4 1 23 334 356 334 356 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF35-202 - 527 4.5e-73 237.8 72.0 6 11 2.2e-09 1.9e-06 28.0 0.1 1 23 362 384 362 384 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF35-202 - 527 4.5e-73 237.8 72.0 7 11 2e-06 0.0018 18.6 2.9 1 23 390 412 390 412 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF35-202 - 527 4.5e-73 237.8 72.0 8 11 5.3e-08 4.7e-05 23.6 0.6 1 23 418 440 418 440 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF35-202 - 527 4.5e-73 237.8 72.0 9 11 1.3e-06 0.0012 19.2 1.1 1 23 446 468 446 468 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF35-202 - 527 4.5e-73 237.8 72.0 10 11 3.3e-10 2.9e-07 30.5 1.2 1 23 474 496 474 496 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF35-202 - 527 4.5e-73 237.8 72.0 11 11 7.8e-08 7e-05 23.1 2.7 1 23 502 524 502 524 0.99 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZNF35-202 - 527 1e-35 119.3 72.6 1 11 1.6e-05 0.015 16.1 0.2 1 23 222 244 222 245 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF35-202 - 527 1e-35 119.3 72.6 2 11 0.00028 0.25 12.3 0.3 1 23 250 272 250 273 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF35-202 - 527 1e-35 119.3 72.6 3 11 3.1e-05 0.028 15.2 0.6 1 23 278 300 278 301 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF35-202 - 527 1e-35 119.3 72.6 4 11 1.2e-05 0.011 16.6 0.8 1 23 306 328 306 329 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF35-202 - 527 1e-35 119.3 72.6 5 11 6.6e-06 0.0059 17.3 0.3 1 23 334 356 334 357 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF35-202 - 527 1e-35 119.3 72.6 6 11 4.5e-05 0.041 14.7 0.1 1 23 362 384 362 385 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF35-202 - 527 1e-35 119.3 72.6 7 11 2.9e-05 0.026 15.3 3.1 1 23 390 412 390 413 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF35-202 - 527 1e-35 119.3 72.6 8 11 0.00029 0.26 12.2 1.0 3 23 420 440 418 441 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF35-202 - 527 1e-35 119.3 72.6 9 11 5.8e-05 0.052 14.4 1.0 1 23 446 468 446 469 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF35-202 - 527 1e-35 119.3 72.6 10 11 1.6e-05 0.015 16.1 0.8 1 23 474 496 474 497 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF35-202 - 527 1e-35 119.3 72.6 11 11 1.6e-05 0.015 16.1 1.9 1 23 502 524 502 525 0.96 C2H2-type zinc finger Zn-ribbon_8 PF09723.10 40 ZNF35-202 - 527 2.5e-15 56.3 49.2 1 9 7.9 7.1e+03 -2.8 0.0 22 34 189 201 186 203 0.64 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF35-202 - 527 2.5e-15 56.3 49.2 2 9 0.00045 0.41 10.8 1.0 6 34 222 257 221 261 0.90 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF35-202 - 527 2.5e-15 56.3 49.2 3 9 0.0051 4.6 7.5 8.7 6 36 250 287 249 317 0.63 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF35-202 - 527 2.5e-15 56.3 49.2 4 9 0.08 71 3.6 1.0 6 17 306 320 304 333 0.71 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF35-202 - 527 2.5e-15 56.3 49.2 5 9 1.8e-06 0.0016 18.5 1.5 6 36 334 371 332 375 0.90 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF35-202 - 527 2.5e-15 56.3 49.2 6 9 2.4e-06 0.0021 18.1 3.6 6 36 390 427 389 431 0.91 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF35-202 - 527 2.5e-15 56.3 49.2 7 9 2.2e-06 0.0019 18.2 2.2 6 38 446 485 444 487 0.91 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF35-202 - 527 2.5e-15 56.3 49.2 8 9 0.00025 0.22 11.7 5.0 6 34 474 509 473 511 0.91 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF35-202 - 527 2.5e-15 56.3 49.2 9 9 0.032 29 4.9 0.7 6 15 502 511 501 519 0.89 Zinc ribbon domain zf-C2H2_6 PF13912.6 27 ZNF35-202 - 527 1.3e-11 44.2 76.1 1 11 0.0037 3.3 7.8 0.2 2 12 222 232 222 244 0.88 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF35-202 - 527 1.3e-11 44.2 76.1 2 11 0.0043 3.8 7.6 0.9 2 11 250 259 250 260 0.96 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF35-202 - 527 1.3e-11 44.2 76.1 3 11 0.0063 5.6 7.1 1.0 2 22 278 298 278 301 0.78 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF35-202 - 527 1.3e-11 44.2 76.1 4 11 0.0021 1.9 8.6 1.3 2 13 306 317 305 328 0.84 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF35-202 - 527 1.3e-11 44.2 76.1 5 11 5.2e-05 0.047 13.7 1.0 2 22 334 354 333 358 0.86 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF35-202 - 527 1.3e-11 44.2 76.1 6 11 0.0098 8.8 6.5 0.1 2 24 362 384 362 387 0.92 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF35-202 - 527 1.3e-11 44.2 76.1 7 11 0.0011 1 9.5 2.3 2 12 390 400 390 414 0.81 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF35-202 - 527 1.3e-11 44.2 76.1 8 11 0.004 3.6 7.7 1.1 2 14 418 430 418 441 0.79 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF35-202 - 527 1.3e-11 44.2 76.1 9 11 0.0054 4.8 7.3 0.5 2 11 446 455 446 456 0.92 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF35-202 - 527 1.3e-11 44.2 76.1 10 11 0.00032 0.28 11.2 0.8 2 24 474 496 474 499 0.92 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF35-202 - 527 1.3e-11 44.2 76.1 11 11 0.021 19 5.4 1.8 2 24 502 524 502 526 0.93 C2H2-type zinc finger XPA_N PF01286.18 32 ZNF35-202 - 527 4.3e-09 36.3 50.9 1 11 0.13 1.1e+02 2.9 0.2 3 14 223 234 221 235 0.83 XPA protein N-terminal XPA_N PF01286.18 32 ZNF35-202 - 527 4.3e-09 36.3 50.9 2 11 0.0041 3.7 7.7 0.2 3 14 251 262 249 263 0.92 XPA protein N-terminal XPA_N PF01286.18 32 ZNF35-202 - 527 4.3e-09 36.3 50.9 3 11 0.0078 7 6.8 0.1 3 14 279 290 277 294 0.91 XPA protein N-terminal XPA_N PF01286.18 32 ZNF35-202 - 527 4.3e-09 36.3 50.9 4 11 0.015 13 5.9 0.4 3 14 307 318 306 325 0.87 XPA protein N-terminal XPA_N PF01286.18 32 ZNF35-202 - 527 4.3e-09 36.3 50.9 5 11 0.0042 3.8 7.6 0.3 3 14 335 346 334 347 0.91 XPA protein N-terminal XPA_N PF01286.18 32 ZNF35-202 - 527 4.3e-09 36.3 50.9 6 11 0.016 15 5.8 0.3 4 14 364 374 362 375 0.93 XPA protein N-terminal XPA_N PF01286.18 32 ZNF35-202 - 527 4.3e-09 36.3 50.9 7 11 0.043 39 4.4 2.0 3 11 391 399 389 401 0.89 XPA protein N-terminal XPA_N PF01286.18 32 ZNF35-202 - 527 4.3e-09 36.3 50.9 8 11 0.02 18 5.5 0.1 3 12 419 428 417 431 0.88 XPA protein N-terminal XPA_N PF01286.18 32 ZNF35-202 - 527 4.3e-09 36.3 50.9 9 11 0.0014 1.3 9.2 0.3 3 16 447 461 445 464 0.76 XPA protein N-terminal XPA_N PF01286.18 32 ZNF35-202 - 527 4.3e-09 36.3 50.9 10 11 0.014 13 5.9 0.1 3 12 475 484 473 487 0.89 XPA protein N-terminal XPA_N PF01286.18 32 ZNF35-202 - 527 4.3e-09 36.3 50.9 11 11 0.048 43 4.2 0.0 3 18 503 519 501 522 0.75 XPA protein N-terminal C1_4 PF07975.12 55 ZNF35-202 - 527 1.2e-07 31.9 52.9 1 8 0.012 11 6.3 0.0 8 49 204 245 196 247 0.85 TFIIH C1-like domain C1_4 PF07975.12 55 ZNF35-202 - 527 1.2e-07 31.9 52.9 2 8 0.0007 0.63 10.3 1.7 1 49 223 273 223 276 0.89 TFIIH C1-like domain C1_4 PF07975.12 55 ZNF35-202 - 527 1.2e-07 31.9 52.9 3 8 0.00061 0.54 10.5 2.8 1 49 251 301 251 303 0.90 TFIIH C1-like domain C1_4 PF07975.12 55 ZNF35-202 - 527 1.2e-07 31.9 52.9 4 8 0.0041 3.7 7.9 4.8 2 47 280 327 279 329 0.80 TFIIH C1-like domain C1_4 PF07975.12 55 ZNF35-202 - 527 1.2e-07 31.9 52.9 5 8 0.00017 0.16 12.3 6.4 1 49 307 357 307 359 0.87 TFIIH C1-like domain C1_4 PF07975.12 55 ZNF35-202 - 527 1.2e-07 31.9 52.9 6 8 0.0012 1 9.6 4.2 2 49 364 413 363 415 0.86 TFIIH C1-like domain C1_4 PF07975.12 55 ZNF35-202 - 527 1.2e-07 31.9 52.9 7 8 0.038 34 4.8 6.7 2 49 420 469 419 471 0.84 TFIIH C1-like domain C1_4 PF07975.12 55 ZNF35-202 - 527 1.2e-07 31.9 52.9 8 8 0.0038 3.4 8.0 1.2 1 36 475 512 474 525 0.77 TFIIH C1-like domain zf_UBZ PF18439.1 32 ZNF35-202 - 527 1.3e-07 31.1 44.7 1 11 0.043 39 4.0 0.0 3 15 222 234 220 241 0.84 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF35-202 - 527 1.3e-07 31.1 44.7 2 11 0.065 59 3.4 0.1 3 15 250 262 248 269 0.82 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF35-202 - 527 1.3e-07 31.1 44.7 3 11 0.0017 1.5 8.5 0.1 3 15 278 290 276 297 0.78 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF35-202 - 527 1.3e-07 31.1 44.7 4 11 0.017 15 5.3 0.2 2 20 305 324 304 325 0.84 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF35-202 - 527 1.3e-07 31.1 44.7 5 11 0.017 15 5.3 0.6 2 14 333 345 332 353 0.83 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF35-202 - 527 1.3e-07 31.1 44.7 6 11 0.067 60 3.4 0.0 3 15 362 374 360 381 0.82 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF35-202 - 527 1.3e-07 31.1 44.7 7 11 0.016 15 5.3 0.7 3 14 390 401 388 406 0.86 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF35-202 - 527 1.3e-07 31.1 44.7 8 11 0.0065 5.9 6.6 0.1 3 13 418 428 416 431 0.87 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF35-202 - 527 1.3e-07 31.1 44.7 9 11 0.019 17 5.1 0.3 3 14 446 457 445 462 0.85 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF35-202 - 527 1.3e-07 31.1 44.7 10 11 0.013 12 5.6 0.1 3 13 474 484 472 493 0.80 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF35-202 - 527 1.3e-07 31.1 44.7 11 11 0.022 20 4.9 0.1 3 15 502 514 500 521 0.80 Ubiquitin-Binding Zinc Finger # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF35-202.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF35-202.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF35-202.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF35-202.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF35-202.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:04:55 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF35-203.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF35-203.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF35-203.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF35-203.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF35-203.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:04:55 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF35-204.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF35-204.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF35-204.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF35-204.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF35-204.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:04:55 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF35-205.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF35-205.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF35-205.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF35-205.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF35-205.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:04:56 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF35-206.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF35-206.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF35-206.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF35-206.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF35-206.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:04:56 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZNF354A-201 - 605 3e-90 292.9 88.3 1 15 0.00023 0.2 12.2 0.4 12 25 211 224 209 225 0.87 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF354A-201 - 605 3e-90 292.9 88.3 2 15 9.9e-10 8.5e-07 29.1 2.2 1 25 228 252 228 253 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF354A-201 - 605 3e-90 292.9 88.3 3 15 6.6e-09 5.7e-06 26.5 0.1 1 25 256 280 256 280 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF354A-201 - 605 3e-90 292.9 88.3 4 15 7.6e-10 6.5e-07 29.5 2.6 1 25 284 308 284 309 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF354A-201 - 605 3e-90 292.9 88.3 5 15 9.6 8.2e+03 -2.4 0.1 5 14 316 325 313 329 0.80 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF354A-201 - 605 3e-90 292.9 88.3 6 15 0.00094 0.8 10.2 0.4 7 26 346 365 345 365 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF354A-201 - 605 3e-90 292.9 88.3 7 15 2.5e-12 2.2e-09 37.3 0.5 1 25 368 392 368 393 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF354A-201 - 605 3e-90 292.9 88.3 8 15 1.9e-10 1.6e-07 31.4 0.2 2 26 397 421 396 421 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF354A-201 - 605 3e-90 292.9 88.3 9 15 4.4e-09 3.8e-06 27.1 0.2 2 23 425 446 424 449 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF354A-201 - 605 3e-90 292.9 88.3 10 15 4.6e-08 3.9e-05 23.9 1.2 5 25 456 476 453 477 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF354A-201 - 605 3e-90 292.9 88.3 11 15 2.6e-10 2.2e-07 31.0 1.4 1 25 480 504 480 505 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF354A-201 - 605 3e-90 292.9 88.3 12 15 5.3e-10 4.5e-07 30.0 0.1 1 25 508 532 508 533 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF354A-201 - 605 3e-90 292.9 88.3 13 15 1.4e-10 1.2e-07 31.8 0.5 1 25 536 560 536 561 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF354A-201 - 605 3e-90 292.9 88.3 14 15 1.1e-09 9.2e-07 29.0 1.0 5 26 568 589 566 589 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF354A-201 - 605 3e-90 292.9 88.3 15 15 1.8 1.5e+03 -0.1 0.0 1 14 592 605 592 605 0.85 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZNF354A-201 - 605 7.4e-68 221.4 96.1 1 13 9.7e-07 0.00083 19.7 2.0 1 23 214 236 214 236 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF354A-201 - 605 7.4e-68 221.4 96.1 2 13 3.3e-08 2.9e-05 24.3 0.5 1 23 242 264 242 264 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF354A-201 - 605 7.4e-68 221.4 96.1 3 13 2.3e-07 0.0002 21.7 1.0 1 23 270 292 270 292 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF354A-201 - 605 7.4e-68 221.4 96.1 4 13 5.4e-09 4.6e-06 26.8 1.3 1 23 298 320 298 320 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF354A-201 - 605 7.4e-68 221.4 96.1 5 13 3.8e-07 0.00032 21.0 1.3 1 23 354 376 354 376 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF354A-201 - 605 7.4e-68 221.4 96.1 6 13 1.2e-07 0.00011 22.5 0.2 1 23 382 404 382 404 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF354A-201 - 605 7.4e-68 221.4 96.1 7 13 6.2e-07 0.00053 20.3 0.5 1 23 410 432 410 432 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF354A-201 - 605 7.4e-68 221.4 96.1 8 13 5.6e-06 0.0048 17.3 0.3 1 23 438 460 438 460 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF354A-201 - 605 7.4e-68 221.4 96.1 9 13 3.2e-08 2.7e-05 24.4 2.0 2 23 467 488 466 488 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF354A-201 - 605 7.4e-68 221.4 96.1 10 13 1.2e-06 0.001 19.4 3.7 1 23 494 516 494 516 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF354A-201 - 605 7.4e-68 221.4 96.1 11 13 1.6e-07 0.00014 22.2 0.1 1 23 522 544 522 544 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF354A-201 - 605 7.4e-68 221.4 96.1 12 13 1.1e-07 9.5e-05 22.6 1.5 1 23 550 572 550 572 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF354A-201 - 605 7.4e-68 221.4 96.1 13 13 1e-06 0.00086 19.6 3.2 1 23 578 600 578 600 0.98 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZNF354A-201 - 605 4.7e-43 142.1 95.0 1 13 1.4e-06 0.0012 19.5 1.5 1 23 214 236 214 237 0.97 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF354A-201 - 605 4.7e-43 142.1 95.0 2 13 4.6e-06 0.004 17.9 0.7 1 23 242 264 242 265 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF354A-201 - 605 4.7e-43 142.1 95.0 3 13 3.9e-06 0.0033 18.1 0.8 1 23 270 292 270 293 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF354A-201 - 605 4.7e-43 142.1 95.0 4 13 5.8e-06 0.005 17.6 0.7 1 23 298 320 298 321 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF354A-201 - 605 4.7e-43 142.1 95.0 5 13 9.6e-06 0.0082 16.9 0.9 1 23 354 376 354 377 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF354A-201 - 605 4.7e-43 142.1 95.0 6 13 7.7e-06 0.0066 17.2 0.3 1 23 382 404 382 405 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF354A-201 - 605 4.7e-43 142.1 95.0 7 13 6.8e-06 0.0058 17.4 0.2 1 23 410 432 410 433 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF354A-201 - 605 4.7e-43 142.1 95.0 8 13 0.00068 0.58 11.1 0.3 1 23 438 460 438 461 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF354A-201 - 605 4.7e-43 142.1 95.0 9 13 1.9e-05 0.016 16.0 2.1 2 23 467 488 466 489 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF354A-201 - 605 4.7e-43 142.1 95.0 10 13 1.8e-06 0.0015 19.2 2.6 1 23 494 516 494 517 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF354A-201 - 605 4.7e-43 142.1 95.0 11 13 6.2e-05 0.053 14.4 0.1 1 23 522 544 522 545 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF354A-201 - 605 4.7e-43 142.1 95.0 12 13 0.0015 1.3 10.1 1.0 1 23 550 572 550 573 0.89 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF354A-201 - 605 4.7e-43 142.1 95.0 13 13 0.001 0.87 10.6 1.3 1 23 578 600 578 601 0.95 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF354A-201 - 605 2.1e-28 97.7 88.0 1 13 5.8e-05 0.049 13.6 1.7 1 25 213 237 213 239 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF354A-201 - 605 2.1e-28 97.7 88.0 2 13 9.1e-06 0.0077 16.2 0.9 2 24 242 264 241 267 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF354A-201 - 605 2.1e-28 97.7 88.0 3 13 1.5e-05 0.013 15.5 1.6 2 24 270 292 270 293 0.98 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF354A-201 - 605 2.1e-28 97.7 88.0 4 13 3.9e-05 0.033 14.2 0.7 2 20 298 316 297 323 0.78 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF354A-201 - 605 2.1e-28 97.7 88.0 5 13 8.2e-05 0.07 13.2 1.0 2 24 354 376 353 379 0.89 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF354A-201 - 605 2.1e-28 97.7 88.0 6 13 0.00091 0.78 9.8 0.4 2 21 382 401 382 406 0.84 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF354A-201 - 605 2.1e-28 97.7 88.0 7 13 7.9e-06 0.0067 16.4 0.1 2 24 410 432 410 435 0.92 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF354A-201 - 605 2.1e-28 97.7 88.0 8 13 0.0043 3.6 7.7 0.3 2 13 438 449 437 460 0.87 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF354A-201 - 605 2.1e-28 97.7 88.0 9 13 0.00032 0.28 11.2 0.7 3 24 467 488 467 491 0.91 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF354A-201 - 605 2.1e-28 97.7 88.0 10 13 0.001 0.88 9.6 1.7 2 12 494 504 494 516 0.91 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF354A-201 - 605 2.1e-28 97.7 88.0 11 13 0.0016 1.4 9.0 0.1 2 24 522 544 522 547 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF354A-201 - 605 2.1e-28 97.7 88.0 12 13 0.0017 1.4 9.0 1.1 2 12 550 560 550 561 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF354A-201 - 605 2.1e-28 97.7 88.0 13 13 0.0019 1.6 8.8 1.6 2 20 578 596 578 600 0.78 C2H2-type zinc finger KRAB PF01352.27 42 ZNF354A-201 - 605 6.8e-24 83.2 0.1 1 1 1.3e-26 1.1e-23 82.6 0.1 1 42 13 54 13 54 0.98 KRAB box zf-C2H2_jaz PF12171.8 27 ZNF354A-201 - 605 1.4e-18 66.7 54.7 1 13 2.7e-06 0.0023 18.1 2.3 2 24 214 236 213 237 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF354A-201 - 605 1.4e-18 66.7 54.7 2 13 0.00048 0.41 11.0 1.3 2 22 242 262 241 264 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF354A-201 - 605 1.4e-18 66.7 54.7 3 13 0.062 53 4.3 0.2 2 23 270 291 269 292 0.80 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF354A-201 - 605 1.4e-18 66.7 54.7 4 13 0.027 23 5.4 0.1 2 13 298 309 297 313 0.87 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF354A-201 - 605 1.4e-18 66.7 54.7 5 13 0.067 57 4.2 0.2 4 22 356 374 354 374 0.91 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF354A-201 - 605 1.4e-18 66.7 54.7 6 13 0.0067 5.7 7.3 0.0 2 22 382 402 381 402 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF354A-201 - 605 1.4e-18 66.7 54.7 7 13 0.025 21 5.5 0.0 2 20 410 428 409 429 0.90 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF354A-201 - 605 1.4e-18 66.7 54.7 8 13 0.051 44 4.5 0.1 2 22 438 458 438 458 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF354A-201 - 605 1.4e-18 66.7 54.7 9 13 0.006 5.1 7.5 0.2 4 22 468 486 467 486 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF354A-201 - 605 1.4e-18 66.7 54.7 10 13 0.02 17 5.8 0.9 2 22 494 514 493 514 0.91 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF354A-201 - 605 1.4e-18 66.7 54.7 11 13 0.023 19 5.6 0.0 2 21 522 541 521 542 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF354A-201 - 605 1.4e-18 66.7 54.7 12 13 0.02 17 5.9 0.1 2 21 550 569 549 570 0.85 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF354A-201 - 605 1.4e-18 66.7 54.7 13 13 0.00039 0.34 11.3 0.5 2 22 578 598 577 598 0.95 Zinc-finger double-stranded RNA-binding zf-C2H2_11 PF16622.5 29 ZNF354A-201 - 605 1.7e-13 50.1 79.9 1 13 0.09 77 3.2 0.5 5 23 214 232 213 234 0.93 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF354A-201 - 605 1.7e-13 50.1 79.9 2 13 0.26 2.2e+02 1.7 1.6 5 28 242 264 241 264 0.86 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF354A-201 - 605 1.7e-13 50.1 79.9 3 13 9.9e-05 0.085 12.6 0.8 7 25 272 290 270 292 0.95 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF354A-201 - 605 1.7e-13 50.1 79.9 4 13 0.0063 5.4 6.9 0.2 3 15 296 308 295 319 0.84 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF354A-201 - 605 1.7e-13 50.1 79.9 5 13 0.00019 0.16 11.7 1.5 4 26 353 375 351 376 0.91 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF354A-201 - 605 1.7e-13 50.1 79.9 6 13 2.7e-05 0.023 14.5 0.3 5 26 382 403 379 404 0.93 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF354A-201 - 605 1.7e-13 50.1 79.9 7 13 6.3e-08 5.4e-05 22.9 0.2 5 26 410 431 407 432 0.93 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF354A-201 - 605 1.7e-13 50.1 79.9 8 13 0.13 1.1e+02 2.6 0.4 6 26 439 459 438 460 0.83 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF354A-201 - 605 1.7e-13 50.1 79.9 9 13 0.17 1.4e+02 2.3 1.7 5 26 466 487 463 488 0.85 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF354A-201 - 605 1.7e-13 50.1 79.9 10 13 0.0011 0.94 9.3 1.5 5 26 494 515 492 516 0.94 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF354A-201 - 605 1.7e-13 50.1 79.9 11 13 0.00058 0.5 10.2 0.2 5 26 522 543 519 544 0.94 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF354A-201 - 605 1.7e-13 50.1 79.9 12 13 0.66 5.6e+02 0.4 0.1 5 14 550 559 547 568 0.85 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF354A-201 - 605 1.7e-13 50.1 79.9 13 13 0.22 1.9e+02 1.9 0.3 6 26 579 599 576 600 0.89 zinc-finger C2H2-type Zn-ribbon_8 PF09723.10 40 ZNF354A-201 - 605 5.1e-13 48.9 63.9 1 10 0.14 1.2e+02 2.9 0.1 6 16 214 224 213 236 0.81 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF354A-201 - 605 5.1e-13 48.9 63.9 2 10 0.00049 0.42 10.8 2.2 6 35 242 278 241 282 0.83 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF354A-201 - 605 5.1e-13 48.9 63.9 3 10 0.00024 0.2 11.8 0.7 6 22 298 320 297 328 0.70 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF354A-201 - 605 5.1e-13 48.9 63.9 4 10 0.0005 0.42 10.8 3.0 6 35 354 390 352 394 0.87 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF354A-201 - 605 5.1e-13 48.9 63.9 5 10 0.016 14 5.9 0.3 6 19 382 395 381 403 0.79 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF354A-201 - 605 5.1e-13 48.9 63.9 6 10 8.4e-05 0.072 13.2 1.7 6 35 410 446 409 449 0.75 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF354A-201 - 605 5.1e-13 48.9 63.9 7 10 0.0014 1.2 9.3 2.4 6 37 438 476 436 478 0.85 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF354A-201 - 605 5.1e-13 48.9 63.9 8 10 0.00035 0.3 11.2 6.5 6 33 494 528 493 533 0.94 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF354A-201 - 605 5.1e-13 48.9 63.9 9 10 7.8e-05 0.067 13.3 2.6 6 34 550 585 549 590 0.92 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF354A-201 - 605 5.1e-13 48.9 63.9 10 10 0.0094 8 6.7 0.2 6 20 578 592 577 596 0.85 Zinc ribbon domain zf-met PF12874.7 25 ZNF354A-201 - 605 2.1e-08 34.3 82.4 1 13 0.00015 0.13 12.7 0.7 1 20 214 233 214 234 0.94 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF354A-201 - 605 2.1e-08 34.3 82.4 2 13 0.026 22 5.6 0.7 1 19 242 260 242 263 0.95 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF354A-201 - 605 2.1e-08 34.3 82.4 3 13 0.51 4.3e+02 1.5 0.5 1 21 270 290 270 293 0.84 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF354A-201 - 605 2.1e-08 34.3 82.4 4 13 0.0097 8.3 7.0 0.3 1 20 298 317 298 320 0.89 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF354A-201 - 605 2.1e-08 34.3 82.4 5 13 1.2 1e+03 0.3 2.4 3 21 356 374 344 377 0.87 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF354A-201 - 605 2.1e-08 34.3 82.4 6 13 0.031 27 5.3 0.3 1 22 382 403 382 405 0.91 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF354A-201 - 605 2.1e-08 34.3 82.4 7 13 0.027 23 5.6 0.0 1 19 410 428 410 429 0.92 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF354A-201 - 605 2.1e-08 34.3 82.4 8 13 0.012 10 6.6 0.6 1 22 438 459 437 461 0.88 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF354A-201 - 605 2.1e-08 34.3 82.4 9 13 0.0059 5.1 7.6 0.2 3 20 468 485 467 486 0.93 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF354A-201 - 605 2.1e-08 34.3 82.4 10 13 0.0074 6.3 7.3 3.3 1 21 494 514 494 517 0.91 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF354A-201 - 605 2.1e-08 34.3 82.4 11 13 0.019 16 6.1 0.1 1 20 522 541 522 545 0.90 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF354A-201 - 605 2.1e-08 34.3 82.4 12 13 0.011 9.6 6.8 0.6 1 21 550 570 550 573 0.90 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF354A-201 - 605 2.1e-08 34.3 82.4 13 13 0.00013 0.11 12.9 2.2 1 21 578 598 578 600 0.94 Zinc-finger of C2H2 type zf_UBZ PF18439.1 32 ZNF354A-201 - 605 7.5e-07 28.6 53.9 1 13 0.34 2.9e+02 1.1 0.2 2 17 213 229 212 233 0.74 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF354A-201 - 605 7.5e-07 28.6 53.9 2 13 0.0053 4.5 6.9 0.2 3 21 242 261 240 261 0.89 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF354A-201 - 605 7.5e-07 28.6 53.9 3 13 0.0098 8.3 6.1 0.1 3 15 270 282 268 289 0.82 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF354A-201 - 605 7.5e-07 28.6 53.9 4 13 0.0038 3.3 7.4 0.3 2 13 297 308 296 311 0.88 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF354A-201 - 605 7.5e-07 28.6 53.9 5 13 0.0069 5.9 6.6 0.1 2 16 353 368 352 373 0.80 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF354A-201 - 605 7.5e-07 28.6 53.9 6 13 0.0025 2.1 8.0 0.2 3 21 382 401 380 401 0.88 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF354A-201 - 605 7.5e-07 28.6 53.9 7 13 0.1 89 2.8 0.1 3 12 410 419 408 426 0.83 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF354A-201 - 605 7.5e-07 28.6 53.9 8 13 0.018 15 5.3 0.1 3 15 438 450 436 457 0.84 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF354A-201 - 605 7.5e-07 28.6 53.9 9 13 0.73 6.2e+02 0.1 0.6 4 21 467 485 466 485 0.84 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF354A-201 - 605 7.5e-07 28.6 53.9 10 13 0.017 14 5.3 0.6 3 17 494 509 492 513 0.77 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF354A-201 - 605 7.5e-07 28.6 53.9 11 13 0.018 15 5.2 0.1 3 20 522 540 520 541 0.76 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF354A-201 - 605 7.5e-07 28.6 53.9 12 13 0.045 39 4.0 0.1 3 20 550 568 548 569 0.81 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF354A-201 - 605 7.5e-07 28.6 53.9 13 13 0.22 1.9e+02 1.8 0.1 3 14 578 589 576 596 0.79 Ubiquitin-Binding Zinc Finger # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF354A-201.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF354A-201.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF354A-201.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF354A-201.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF354A-201.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:04:57 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- KRAB PF01352.27 42 ZNF354A-202 - 66 1.6e-25 88.4 0.1 1 1 1.1e-29 2e-25 88.1 0.1 1 42 13 54 13 54 0.98 KRAB box # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF354A-202.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF354A-202.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF354A-202.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF354A-202.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF354A-202.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:04:57 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF354A-203.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF354A-203.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF354A-203.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF354A-203.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF354A-203.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:04:57 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZNF354B-201 - 612 1.3e-90 294.1 90.8 1 15 0.00014 0.18 12.3 1.1 10 26 209 225 205 225 0.87 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF354B-201 - 612 1.3e-90 294.1 90.8 2 15 8.8e-11 1.1e-07 31.9 2.1 1 25 228 252 228 253 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF354B-201 - 612 1.3e-90 294.1 90.8 3 15 2.8e-10 3.6e-07 30.3 0.7 1 26 256 281 256 281 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF354B-201 - 612 1.3e-90 294.1 90.8 4 15 1.2e-06 0.0015 18.8 6.3 4 25 287 308 284 309 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF354B-201 - 612 1.3e-90 294.1 90.8 5 15 0.13 1.7e+02 2.9 0.1 5 17 316 328 312 337 0.82 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF354B-201 - 612 1.3e-90 294.1 90.8 6 15 0.00079 1 9.9 0.1 6 26 345 365 340 365 0.89 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF354B-201 - 612 1.3e-90 294.1 90.8 7 15 1.7e-12 2.2e-09 37.3 0.5 1 25 368 392 368 393 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF354B-201 - 612 1.3e-90 294.1 90.8 8 15 1.3e-10 1.6e-07 31.4 0.2 2 26 397 421 396 421 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF354B-201 - 612 1.3e-90 294.1 90.8 9 15 6e-09 7.7e-06 26.1 0.1 2 23 425 446 424 449 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF354B-201 - 612 1.3e-90 294.1 90.8 10 15 3.1e-08 3.9e-05 23.9 1.2 5 25 456 476 453 477 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF354B-201 - 612 1.3e-90 294.1 90.8 11 15 1.1e-10 1.4e-07 31.6 1.5 1 25 480 504 480 505 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF354B-201 - 612 1.3e-90 294.1 90.8 12 15 6.7e-10 8.6e-07 29.1 0.1 1 25 508 532 508 533 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF354B-201 - 612 1.3e-90 294.1 90.8 13 15 6.7e-11 8.6e-08 32.3 0.4 1 25 536 560 536 561 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF354B-201 - 612 1.3e-90 294.1 90.8 14 15 1.2e-10 1.6e-07 31.5 0.1 2 25 565 588 564 589 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF354B-201 - 612 1.3e-90 294.1 90.8 15 15 2.2 2.9e+03 -1.0 0.1 1 12 592 603 592 607 0.81 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZNF354B-201 - 612 3e-69 225.8 101.4 1 14 1.8 2.3e+03 -0.6 0.0 9 17 194 202 187 203 0.86 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF354B-201 - 612 3e-69 225.8 101.4 2 14 2.7e-07 0.00034 20.9 3.8 1 23 214 236 214 236 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF354B-201 - 612 3e-69 225.8 101.4 3 14 3.5e-08 4.5e-05 23.7 0.8 1 23 242 264 242 264 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF354B-201 - 612 3e-69 225.8 101.4 4 14 3.2e-08 4.1e-05 23.8 3.8 1 23 270 292 270 292 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF354B-201 - 612 3e-69 225.8 101.4 5 14 3.6e-09 4.6e-06 26.8 1.3 1 23 298 320 298 320 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF354B-201 - 612 3e-69 225.8 101.4 6 14 2.6e-07 0.00033 20.9 1.3 1 23 354 376 354 376 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF354B-201 - 612 3e-69 225.8 101.4 7 14 8.3e-08 0.00011 22.5 0.2 1 23 382 404 382 404 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF354B-201 - 612 3e-69 225.8 101.4 8 14 4.2e-07 0.00054 20.3 0.5 1 23 410 432 410 432 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF354B-201 - 612 3e-69 225.8 101.4 9 14 3.8e-06 0.0049 17.3 0.3 1 23 438 460 438 460 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF354B-201 - 612 3e-69 225.8 101.4 10 14 2.2e-08 2.8e-05 24.3 2.0 2 23 467 488 466 488 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF354B-201 - 612 3e-69 225.8 101.4 11 14 2e-06 0.0025 18.2 4.2 1 23 494 516 494 516 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF354B-201 - 612 3e-69 225.8 101.4 12 14 4.1e-07 0.00053 20.3 0.1 1 23 522 544 522 544 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF354B-201 - 612 3e-69 225.8 101.4 13 14 1.1e-09 1.5e-06 28.4 1.0 1 23 550 572 550 572 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF354B-201 - 612 3e-69 225.8 101.4 14 14 5.2e-07 0.00066 20.0 0.8 1 23 578 600 578 600 0.98 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZNF354B-201 - 612 1.4e-42 140.6 92.6 1 13 0.00037 0.47 11.4 2.9 1 23 214 236 214 237 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF354B-201 - 612 1.4e-42 140.6 92.6 2 13 1.2e-05 0.016 16.0 1.1 1 23 242 264 242 265 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF354B-201 - 612 1.4e-42 140.6 92.6 3 13 1.3e-05 0.016 16.0 3.6 1 23 270 292 270 293 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF354B-201 - 612 1.4e-42 140.6 92.6 4 13 3.9e-06 0.0051 17.6 0.7 1 23 298 320 298 321 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF354B-201 - 612 1.4e-42 140.6 92.6 5 13 6.5e-06 0.0083 16.9 0.9 1 23 354 376 354 377 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF354B-201 - 612 1.4e-42 140.6 92.6 6 13 5.2e-06 0.0067 17.2 0.3 1 23 382 404 382 405 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF354B-201 - 612 1.4e-42 140.6 92.6 7 13 4.6e-06 0.0059 17.3 0.2 1 23 410 432 410 433 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF354B-201 - 612 1.4e-42 140.6 92.6 8 13 0.00046 0.59 11.1 0.3 1 23 438 460 438 461 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF354B-201 - 612 1.4e-42 140.6 92.6 9 13 1.3e-05 0.017 15.9 2.1 2 23 467 488 466 489 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF354B-201 - 612 1.4e-42 140.6 92.6 10 13 4.3e-06 0.0055 17.4 2.9 1 23 494 516 494 517 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF354B-201 - 612 1.4e-42 140.6 92.6 11 13 0.00029 0.37 11.8 0.1 1 23 522 544 522 545 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF354B-201 - 612 1.4e-42 140.6 92.6 12 13 1.5e-05 0.02 15.7 0.7 1 23 550 572 550 573 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF354B-201 - 612 1.4e-42 140.6 92.6 13 13 3.9e-05 0.05 14.5 0.4 1 23 578 600 578 601 0.96 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF354B-201 - 612 1.5e-24 85.4 94.3 1 13 0.00041 0.53 10.4 3.3 1 24 213 236 213 239 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF354B-201 - 612 1.5e-24 85.4 94.3 2 13 5.5e-06 0.0071 16.3 1.1 2 24 242 264 241 267 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF354B-201 - 612 1.5e-24 85.4 94.3 3 13 0.00022 0.29 11.2 5.4 2 24 270 292 270 293 0.98 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF354B-201 - 612 1.5e-24 85.4 94.3 4 13 0.0001 0.13 12.3 2.3 2 21 298 317 297 323 0.78 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF354B-201 - 612 1.5e-24 85.4 94.3 5 13 5.5e-05 0.071 13.1 1.0 2 24 354 376 353 379 0.89 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF354B-201 - 612 1.5e-24 85.4 94.3 6 13 0.00061 0.79 9.8 0.4 2 21 382 401 382 406 0.84 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF354B-201 - 612 1.5e-24 85.4 94.3 7 13 5.3e-06 0.0068 16.4 0.1 2 24 410 432 410 435 0.92 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF354B-201 - 612 1.5e-24 85.4 94.3 8 13 0.002 2.5 8.2 0.1 2 13 438 449 437 460 0.86 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF354B-201 - 612 1.5e-24 85.4 94.3 9 13 0.00022 0.28 11.2 0.7 3 24 467 488 467 491 0.91 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF354B-201 - 612 1.5e-24 85.4 94.3 10 13 0.0012 1.5 8.9 1.7 2 12 494 504 494 516 0.91 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF354B-201 - 612 1.5e-24 85.4 94.3 11 13 0.025 32 4.7 0.1 2 24 522 544 522 547 0.88 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF354B-201 - 612 1.5e-24 85.4 94.3 12 13 3.7e-05 0.047 13.7 0.6 2 24 550 572 550 575 0.89 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF354B-201 - 612 1.5e-24 85.4 94.3 13 13 0.0069 8.8 6.5 0.9 2 20 578 596 578 600 0.80 C2H2-type zinc finger KRAB PF01352.27 42 ZNF354B-201 - 612 3.7e-24 84.1 0.3 1 1 5e-27 6.4e-24 83.3 0.3 1 42 13 54 13 54 0.98 KRAB box zf-C2H2_jaz PF12171.8 27 ZNF354B-201 - 612 3.2e-16 59.1 62.3 1 13 0.00039 0.5 10.7 4.1 2 23 214 235 213 236 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF354B-201 - 612 3.2e-16 59.1 62.3 2 13 0.003 3.9 7.9 1.2 2 24 242 264 241 264 0.95 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF354B-201 - 612 3.2e-16 59.1 62.3 3 13 0.0013 1.7 9.0 1.5 2 24 270 292 269 292 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF354B-201 - 612 3.2e-16 59.1 62.3 4 13 0.029 37 4.8 0.5 2 13 298 309 297 313 0.87 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF354B-201 - 612 3.2e-16 59.1 62.3 5 13 0.045 58 4.1 0.2 4 22 356 374 354 374 0.91 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF354B-201 - 612 3.2e-16 59.1 62.3 6 13 0.0045 5.8 7.3 0.0 2 22 382 402 381 402 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF354B-201 - 612 3.2e-16 59.1 62.3 7 13 0.017 21 5.5 0.0 2 20 410 428 409 429 0.90 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF354B-201 - 612 3.2e-16 59.1 62.3 8 13 0.029 37 4.8 0.1 2 22 438 458 437 458 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF354B-201 - 612 3.2e-16 59.1 62.3 9 13 0.0041 5.2 7.5 0.2 4 22 468 486 467 486 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF354B-201 - 612 3.2e-16 59.1 62.3 10 13 0.0018 2.3 8.6 1.8 2 22 494 514 493 514 0.91 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF354B-201 - 612 3.2e-16 59.1 62.3 11 13 0.047 60 4.1 0.0 2 22 522 542 521 542 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF354B-201 - 612 3.2e-16 59.1 62.3 12 13 0.0012 1.6 9.1 0.0 2 22 550 570 549 570 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF354B-201 - 612 3.2e-16 59.1 62.3 13 13 0.0014 1.8 9.0 0.1 2 22 578 598 577 598 0.95 Zinc-finger double-stranded RNA-binding Zn-ribbon_8 PF09723.10 40 ZNF354B-201 - 612 1.2e-11 44.5 62.4 1 11 0.19 2.4e+02 1.9 4.2 6 32 214 247 213 249 0.77 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF354B-201 - 612 1.2e-11 44.5 62.4 2 11 0.00065 0.84 9.8 2.0 6 34 242 277 241 281 0.89 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF354B-201 - 612 1.2e-11 44.5 62.4 3 11 0.00053 0.68 10.1 0.6 6 19 298 311 297 326 0.76 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF354B-201 - 612 1.2e-11 44.5 62.4 4 11 0.00033 0.42 10.8 2.9 6 35 354 390 353 394 0.87 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF354B-201 - 612 1.2e-11 44.5 62.4 5 11 0.011 14 5.9 0.3 6 19 382 395 381 403 0.79 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF354B-201 - 612 1.2e-11 44.5 62.4 6 11 1.1e-05 0.014 15.5 1.2 6 36 410 447 409 450 0.77 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF354B-201 - 612 1.2e-11 44.5 62.4 7 11 0.0013 1.7 8.8 3.0 6 37 438 476 437 479 0.85 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF354B-201 - 612 1.2e-11 44.5 62.4 8 11 0.0025 3.2 7.9 5.4 6 33 494 528 493 533 0.93 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF354B-201 - 612 1.2e-11 44.5 62.4 9 11 0.00026 0.34 11.1 1.8 6 37 522 560 521 563 0.90 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF354B-201 - 612 1.2e-11 44.5 62.4 10 11 2e-05 0.026 14.7 1.8 6 34 550 585 549 590 0.90 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF354B-201 - 612 1.2e-11 44.5 62.4 11 11 0.0041 5.2 7.3 0.2 6 20 578 592 577 596 0.84 Zinc ribbon domain zf-C2H2_11 PF16622.5 29 ZNF354B-201 - 612 4.6e-09 35.9 89.3 1 13 0.21 2.6e+02 1.5 1.3 5 23 214 232 212 234 0.93 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF354B-201 - 612 4.6e-09 35.9 89.3 2 13 0.74 9.4e+02 -0.3 0.9 5 23 242 260 241 263 0.84 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF354B-201 - 612 4.6e-09 35.9 89.3 3 13 0.0023 2.9 7.7 4.1 7 25 272 290 270 292 0.95 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF354B-201 - 612 4.6e-09 35.9 89.3 4 13 0.036 46 3.9 1.1 5 15 298 308 295 319 0.82 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF354B-201 - 612 4.6e-09 35.9 89.3 5 13 0.00013 0.16 11.7 1.5 4 26 353 375 351 376 0.91 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF354B-201 - 612 4.6e-09 35.9 89.3 6 13 1.8e-05 0.023 14.4 0.3 5 26 382 403 379 404 0.93 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF354B-201 - 612 4.6e-09 35.9 89.3 7 13 4.3e-08 5.5e-05 22.8 0.2 5 26 410 431 407 432 0.93 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF354B-201 - 612 4.6e-09 35.9 89.3 8 13 0.09 1.2e+02 2.6 0.4 6 26 439 459 438 460 0.83 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF354B-201 - 612 4.6e-09 35.9 89.3 9 13 0.11 1.4e+02 2.3 1.7 5 26 466 487 463 488 0.85 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF354B-201 - 612 4.6e-09 35.9 89.3 10 13 0.015 19 5.1 1.0 5 26 494 515 492 516 0.94 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF354B-201 - 612 4.6e-09 35.9 89.3 11 13 0.00025 0.32 10.8 0.3 5 26 522 543 519 544 0.92 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF354B-201 - 612 4.6e-09 35.9 89.3 12 13 0.044 56 3.6 0.5 5 26 550 571 547 572 0.89 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF354B-201 - 612 4.6e-09 35.9 89.3 13 13 0.013 17 5.3 0.2 6 26 579 599 576 600 0.91 zinc-finger C2H2-type # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF354B-201.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF354B-201.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF354B-201.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF354B-201.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF354B-201.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:04:58 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF354B-202.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF354B-202.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF354B-202.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF354B-202.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF354B-202.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:04:58 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF354B-203.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF354B-203.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF354B-203.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF354B-203.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF354B-203.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:04:59 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZNF354B-204 - 126 1.8e-34 116.6 19.4 1 5 1.3e-07 5e-05 23.5 2.6 9 25 2 18 1 19 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF354B-204 - 126 1.8e-34 116.6 19.4 2 5 2.6e-10 1e-07 32.1 0.1 1 25 22 46 22 47 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF354B-204 - 126 1.8e-34 116.6 19.4 3 5 2.6e-11 1e-08 35.2 0.4 1 25 50 74 50 75 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF354B-204 - 126 1.8e-34 116.6 19.4 4 5 4.8e-11 1.8e-08 34.4 0.1 2 25 79 102 78 103 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF354B-204 - 126 1.8e-34 116.6 19.4 5 5 1.1 4.2e+02 1.6 0.1 1 12 106 117 106 121 0.81 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZNF354B-204 - 126 8e-25 85.9 23.1 1 4 7.9e-07 0.0003 21.1 4.2 1 23 8 30 8 30 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF354B-204 - 126 8e-25 85.9 23.1 2 4 1.7e-07 6.3e-05 23.2 0.1 1 23 36 58 36 58 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF354B-204 - 126 8e-25 85.9 23.1 3 4 4.6e-10 1.8e-07 31.3 1.0 1 23 64 86 64 86 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF354B-204 - 126 8e-25 85.9 23.1 4 4 2.1e-07 7.9e-05 22.9 0.8 1 23 92 114 92 114 0.98 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZNF354B-204 - 126 2.2e-16 59.1 20.5 1 4 1.7e-06 0.00064 20.3 2.9 1 23 8 30 8 31 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF354B-204 - 126 2.2e-16 59.1 20.5 2 4 0.00011 0.043 14.7 0.1 1 23 36 58 36 59 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF354B-204 - 126 2.2e-16 59.1 20.5 3 4 6e-06 0.0023 18.6 0.7 1 23 64 86 64 87 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF354B-204 - 126 2.2e-16 59.1 20.5 4 4 1.5e-05 0.0058 17.4 0.4 1 23 92 114 92 115 0.96 C2H2-type zinc finger zf-C2H2_jaz PF12171.8 27 ZNF354B-204 - 126 4.3e-10 39.6 9.3 1 4 0.00078 0.3 11.4 1.8 2 22 8 28 7 28 0.91 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF354B-204 - 126 4.3e-10 39.6 9.3 2 4 0.02 7.7 6.9 0.0 2 22 36 56 35 56 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF354B-204 - 126 4.3e-10 39.6 9.3 3 4 0.00052 0.2 12.0 0.0 2 22 64 84 63 84 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF354B-204 - 126 4.3e-10 39.6 9.3 4 4 0.00059 0.22 11.8 0.1 2 22 92 112 91 112 0.95 Zinc-finger double-stranded RNA-binding zf-C2H2_6 PF13912.6 27 ZNF354B-204 - 126 5.4e-08 32.6 20.9 1 4 0.00057 0.22 11.6 1.8 2 12 8 18 8 30 0.90 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF354B-204 - 126 5.4e-08 32.6 20.9 2 4 0.01 4 7.6 0.1 2 24 36 58 36 61 0.88 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF354B-204 - 126 5.4e-08 32.6 20.9 3 4 1.5e-05 0.0058 16.6 0.6 2 24 64 86 64 89 0.90 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF354B-204 - 126 5.4e-08 32.6 20.9 4 4 0.0032 1.2 9.2 1.0 2 20 92 110 92 114 0.81 C2H2-type zinc finger zf-met PF12874.7 25 ZNF354B-204 - 126 9.7e-07 29.0 23.7 1 4 0.00031 0.12 12.8 3.7 1 21 8 28 8 31 0.91 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF354B-204 - 126 9.7e-07 29.0 23.7 2 4 0.19 71 4.0 0.1 1 21 36 56 36 59 0.87 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF354B-204 - 126 9.7e-07 29.0 23.7 3 4 0.00035 0.13 12.7 0.6 1 21 64 84 64 87 0.91 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF354B-204 - 126 9.7e-07 29.0 23.7 4 4 0.00034 0.13 12.7 1.3 1 21 92 112 92 114 0.94 Zinc-finger of C2H2 type # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF354B-204.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF354B-204.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF354B-204.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF354B-204.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF354B-204.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:04:59 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZNF354C-201 - 554 5.8e-84 273.1 80.8 1 12 0.0081 8.5 7.0 0.4 11 26 212 227 211 227 0.86 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF354C-201 - 554 5.8e-84 273.1 80.8 2 12 2.1e-10 2.3e-07 31.0 3.6 1 26 230 255 230 255 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF354C-201 - 554 5.8e-84 273.1 80.8 3 12 2.7e-11 2.9e-08 33.8 0.5 2 26 259 283 258 283 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF354C-201 - 554 5.8e-84 273.1 80.8 4 12 1.6e-11 1.7e-08 34.5 0.5 2 25 287 310 286 311 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF354C-201 - 554 5.8e-84 273.1 80.8 5 12 5.3e-09 5.6e-06 26.5 1.3 2 25 315 338 314 339 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF354C-201 - 554 5.8e-84 273.1 80.8 6 12 1.5e-10 1.5e-07 31.5 2.3 4 25 345 366 342 367 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF354C-201 - 554 5.8e-84 273.1 80.8 7 12 4.8e-08 5e-05 23.5 0.2 2 26 371 395 370 395 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF354C-201 - 554 5.8e-84 273.1 80.8 8 12 1.6e-10 1.7e-07 31.3 0.2 4 25 401 422 399 423 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF354C-201 - 554 5.8e-84 273.1 80.8 9 12 9.7e-10 1e-06 28.9 1.7 2 25 427 450 426 451 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF354C-201 - 554 5.8e-84 273.1 80.8 10 12 7.3e-13 7.7e-10 38.8 0.3 1 25 454 478 454 479 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF354C-201 - 554 5.8e-84 273.1 80.8 11 12 8.3e-10 8.8e-07 29.1 0.6 2 25 483 506 483 507 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF354C-201 - 554 5.8e-84 273.1 80.8 12 12 0.002 2.1 8.9 0.5 4 16 513 525 510 533 0.89 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZNF354C-201 - 554 1.3e-52 173.4 95.0 1 12 4.6 4.8e+03 -1.6 0.0 7 18 194 205 194 205 0.88 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF354C-201 - 554 1.3e-52 173.4 95.0 2 12 1.4e-07 0.00015 22.0 2.1 1 23 216 238 216 238 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF354C-201 - 554 1.3e-52 173.4 95.0 3 12 3.1e-08 3.3e-05 24.1 3.5 1 23 244 266 244 266 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF354C-201 - 554 1.3e-52 173.4 95.0 4 12 4.4e-09 4.7e-06 26.8 0.7 1 23 272 294 272 294 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF354C-201 - 554 1.3e-52 173.4 95.0 5 12 1.1e-08 1.2e-05 25.5 2.4 1 23 300 322 300 322 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF354C-201 - 554 1.3e-52 173.4 95.0 6 12 0.00011 0.11 13.0 4.0 1 23 328 350 328 350 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF354C-201 - 554 1.3e-52 173.4 95.0 7 12 3.3e-06 0.0035 17.7 0.9 1 23 356 378 356 378 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF354C-201 - 554 1.3e-52 173.4 95.0 8 12 3.5e-07 0.00037 20.8 0.2 1 23 384 406 384 406 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF354C-201 - 554 1.3e-52 173.4 95.0 9 12 1.2e-06 0.0012 19.1 1.1 1 23 412 434 412 434 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF354C-201 - 554 1.3e-52 173.4 95.0 10 12 7.8e-07 0.00083 19.7 1.9 1 23 440 462 440 462 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF354C-201 - 554 1.3e-52 173.4 95.0 11 12 2.1e-07 0.00022 21.5 0.7 1 23 468 490 468 490 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF354C-201 - 554 1.3e-52 173.4 95.0 12 12 4.9e-07 0.00051 20.3 4.1 1 23 496 518 496 518 0.98 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZNF354C-201 - 554 1.1e-30 103.6 87.4 1 11 0.00023 0.24 12.4 1.5 1 23 216 238 216 239 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF354C-201 - 554 1.1e-30 103.6 87.4 2 11 6e-05 0.064 14.1 2.7 1 23 244 266 244 267 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF354C-201 - 554 1.1e-30 103.6 87.4 3 11 2.6e-06 0.0028 18.4 0.7 1 23 272 294 272 295 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF354C-201 - 554 1.1e-30 103.6 87.4 4 11 2.8e-05 0.029 15.2 2.1 1 23 300 322 300 323 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF354C-201 - 554 1.1e-30 103.6 87.4 5 11 0.0001 0.11 13.4 3.4 1 23 328 350 328 351 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF354C-201 - 554 1.1e-30 103.6 87.4 6 11 0.00015 0.16 12.9 0.9 1 23 356 378 356 379 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF354C-201 - 554 1.1e-30 103.6 87.4 7 11 0.00015 0.16 12.9 0.2 1 23 384 406 384 407 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF354C-201 - 554 1.1e-30 103.6 87.4 8 11 0.00015 0.15 12.9 0.9 1 23 412 434 412 435 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF354C-201 - 554 1.1e-30 103.6 87.4 9 11 6.4e-06 0.0067 17.2 1.5 1 23 440 462 440 463 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF354C-201 - 554 1.1e-30 103.6 87.4 10 11 2.9e-05 0.03 15.1 0.7 1 23 468 490 468 491 0.83 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF354C-201 - 554 1.1e-30 103.6 87.4 11 11 0.00015 0.16 12.9 3.3 1 23 496 518 496 519 0.94 C2H2-type zinc finger KRAB PF01352.27 42 ZNF354C-201 - 554 1.1e-23 82.6 0.2 1 1 2.1e-26 2.2e-23 81.6 0.2 1 42 11 52 11 52 0.99 KRAB box zf-C2H2_6 PF13912.6 27 ZNF354C-201 - 554 5.8e-14 51.7 81.3 1 11 0.00021 0.23 11.5 0.6 2 12 216 226 216 238 0.86 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF354C-201 - 554 5.8e-14 51.7 81.3 2 11 0.0014 1.5 8.9 1.4 2 12 244 254 244 267 0.80 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF354C-201 - 554 5.8e-14 51.7 81.3 3 11 0.00084 0.89 9.6 0.6 2 24 272 294 272 297 0.88 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF354C-201 - 554 5.8e-14 51.7 81.3 4 11 0.013 14 5.8 1.0 2 12 300 310 300 320 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF354C-201 - 554 5.8e-14 51.7 81.3 5 11 0.056 59 3.8 0.5 2 12 328 338 327 338 0.92 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF354C-201 - 554 5.8e-14 51.7 81.3 6 11 7.3e-05 0.077 13.0 2.3 2 24 356 378 356 381 0.91 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF354C-201 - 554 5.8e-14 51.7 81.3 7 11 0.0002 0.21 11.6 0.1 2 24 384 406 383 409 0.90 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF354C-201 - 554 5.8e-14 51.7 81.3 8 11 3e-05 0.031 14.3 1.3 2 24 412 434 412 437 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF354C-201 - 554 5.8e-14 51.7 81.3 9 11 0.045 48 4.1 1.5 2 12 440 450 439 453 0.92 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF354C-201 - 554 5.8e-14 51.7 81.3 10 11 0.00058 0.61 10.1 1.3 2 22 468 488 468 492 0.88 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF354C-201 - 554 5.8e-14 51.7 81.3 11 11 0.0037 3.9 7.6 4.6 2 26 496 520 495 521 0.93 C2H2-type zinc finger # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF354C-201.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF354C-201.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF354C-201.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF354C-201.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF354C-201.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:05:00 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-C2H2 PF00096.26 23 ZNF362-201 - 407 7.9e-26 89.0 59.0 1 6 1.6e-05 0.018 15.5 1.8 1 23 214 236 214 236 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF362-201 - 407 7.9e-26 89.0 59.0 2 6 2.7e-08 3e-05 24.2 2.7 1 23 242 264 242 264 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF362-201 - 407 7.9e-26 89.0 59.0 3 6 7.2e-08 8.1e-05 22.9 6.4 1 23 270 292 270 292 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF362-201 - 407 7.9e-26 89.0 59.0 4 6 1.8e-08 2e-05 24.8 0.7 1 23 298 322 298 322 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF362-201 - 407 7.9e-26 89.0 59.0 5 6 2.3e-06 0.0026 18.1 0.2 1 23 328 350 328 350 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF362-201 - 407 7.9e-26 89.0 59.0 6 6 1.7e-06 0.0019 18.6 3.8 1 23 358 380 358 380 0.98 Zinc finger, C2H2 type zf-H2C2_2 PF13465.6 26 ZNF362-201 - 407 5e-25 86.8 58.6 1 7 0.068 77 4.0 0.5 13 24 212 223 205 225 0.80 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF362-201 - 407 5e-25 86.8 58.6 2 7 1.5e-07 0.00017 21.8 4.6 5 26 232 253 229 253 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF362-201 - 407 5e-25 86.8 58.6 3 7 3.9e-10 4.3e-07 30.1 1.0 2 25 257 280 256 281 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF362-201 - 407 5e-25 86.8 58.6 4 7 1.6e-09 1.8e-06 28.1 2.1 1 25 284 310 284 311 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF362-201 - 407 5e-25 86.8 58.6 5 7 1.1e-08 1.2e-05 25.5 1.3 1 24 314 337 314 338 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF362-201 - 407 5e-25 86.8 58.6 6 7 0.0062 7 7.3 2.0 1 26 346 369 346 369 0.87 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF362-201 - 407 5e-25 86.8 58.6 7 7 0.13 1.4e+02 3.1 3.9 2 11 373 382 372 394 0.89 Zinc-finger double domain zf-C2H2_4 PF13894.6 24 ZNF362-201 - 407 1.9e-17 62.4 54.4 1 6 2.1e-05 0.024 15.4 1.5 1 23 214 236 214 237 0.97 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF362-201 - 407 1.9e-17 62.4 54.4 2 6 1.7e-06 0.0019 18.9 2.3 1 23 242 264 242 265 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF362-201 - 407 1.9e-17 62.4 54.4 3 6 6.3e-05 0.07 14.0 4.6 1 23 270 292 270 293 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF362-201 - 407 1.9e-17 62.4 54.4 4 6 3.4e-05 0.038 14.8 0.7 1 23 298 322 298 323 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF362-201 - 407 1.9e-17 62.4 54.4 5 6 2.4e-05 0.027 15.3 0.1 1 23 328 350 328 351 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF362-201 - 407 1.9e-17 62.4 54.4 6 6 6.2e-06 0.007 17.1 2.8 1 23 358 380 358 381 0.96 C2H2-type zinc finger # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF362-201.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF362-201.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF362-201.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF362-201.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF362-201.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:05:00 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZNF362-202 - 62 1.1e-13 50.9 18.3 1 3 1.2e-08 8.9e-06 25.9 4.6 5 26 4 25 1 25 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF362-202 - 62 1.1e-13 50.9 18.3 2 3 3e-11 2.1e-08 34.2 1.0 2 25 29 52 28 53 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF362-202 - 62 1.1e-13 50.9 18.3 3 3 1.9 1.4e+03 -0.0 0.3 5 10 56 61 55 62 0.50 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZNF362-202 - 62 7.9e-11 41.8 14.8 1 2 2.2e-09 1.6e-06 28.3 2.7 1 23 14 36 14 36 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF362-202 - 62 7.9e-11 41.8 14.8 2 2 3.7e-08 2.6e-05 24.4 4.4 1 21 42 62 42 62 0.96 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZNF362-202 - 62 9.2e-07 29.2 18.8 1 3 6.4 4.6e+03 -1.0 0.2 17 23 2 8 1 9 0.75 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF362-202 - 62 9.2e-07 29.2 18.8 2 3 1.3e-07 9.3e-05 22.9 2.3 1 23 14 36 14 37 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF362-202 - 62 9.2e-07 29.2 18.8 3 3 1.7e-05 0.013 16.3 3.6 1 19 42 60 42 62 0.93 C2H2-type zinc finger # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF362-202.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF362-202.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF362-202.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF362-202.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF362-202.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:05:00 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-C2H2 PF00096.26 23 ZNF362-205 - 420 2.2e-28 97.1 50.7 1 6 1.6e-05 0.019 15.4 1.8 1 23 227 249 227 249 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF362-205 - 420 2.2e-28 97.1 50.7 2 6 2.6e-08 3.1e-05 24.2 2.7 1 23 255 277 255 277 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF362-205 - 420 2.2e-28 97.1 50.7 3 6 7e-08 8.4e-05 22.8 6.4 1 23 283 305 283 305 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF362-205 - 420 2.2e-28 97.1 50.7 4 6 1.7e-08 2.1e-05 24.7 0.7 1 23 311 335 311 335 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF362-205 - 420 2.2e-28 97.1 50.7 5 6 2.3e-06 0.0027 18.1 0.2 1 23 341 363 341 363 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF362-205 - 420 2.2e-28 97.1 50.7 6 6 1.6e-06 0.0019 18.5 3.8 1 23 371 393 371 393 0.98 Zinc finger, C2H2 type zf-H2C2_2 PF13465.6 26 ZNF362-205 - 420 5.3e-25 86.7 58.3 1 7 0.067 80 3.9 0.5 13 24 225 236 218 238 0.80 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF362-205 - 420 5.3e-25 86.7 58.3 2 7 1.5e-07 0.00018 21.8 4.6 5 26 245 266 242 266 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF362-205 - 420 5.3e-25 86.7 58.3 3 7 3.8e-10 4.5e-07 30.0 1.0 2 25 270 293 269 294 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF362-205 - 420 5.3e-25 86.7 58.3 4 7 1.6e-09 1.9e-06 28.0 2.1 1 25 297 323 297 324 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF362-205 - 420 5.3e-25 86.7 58.3 5 7 1.1e-08 1.3e-05 25.4 1.3 1 24 327 350 327 351 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF362-205 - 420 5.3e-25 86.7 58.3 6 7 0.0061 7.2 7.2 2.0 1 26 359 382 359 382 0.87 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF362-205 - 420 5.3e-25 86.7 58.3 7 7 0.1 1.2e+02 3.4 3.6 2 11 386 395 385 407 0.89 Zinc-finger double domain zf-C2H2_4 PF13894.6 24 ZNF362-205 - 420 2.4e-17 62.1 54.4 1 6 2.1e-05 0.025 15.4 1.5 1 23 227 249 227 250 0.97 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF362-205 - 420 2.4e-17 62.1 54.4 2 6 1.6e-06 0.0019 18.8 2.3 1 23 255 277 255 278 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF362-205 - 420 2.4e-17 62.1 54.4 3 6 6.1e-05 0.073 13.9 4.6 1 23 283 305 283 306 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF362-205 - 420 2.4e-17 62.1 54.4 4 6 3.3e-05 0.04 14.8 0.7 1 23 311 335 311 336 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF362-205 - 420 2.4e-17 62.1 54.4 5 6 2.3e-05 0.028 15.2 0.1 1 23 341 363 341 364 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF362-205 - 420 2.4e-17 62.1 54.4 6 6 6.1e-06 0.0072 17.1 2.8 1 23 371 393 371 394 0.96 C2H2-type zinc finger # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF362-205.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF362-205.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF362-205.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF362-205.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF362-205.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:05:01 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-C2H2 PF00096.26 23 ZNF366-201 - 744 7.6e-46 152.1 97.2 1 11 1.6e-07 0.00016 22.0 0.2 2 23 254 275 253 275 0.95 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF366-201 - 744 7.6e-46 152.1 97.2 2 11 2.4e-05 0.024 15.1 8.6 1 23 281 303 281 303 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF366-201 - 744 7.6e-46 152.1 97.2 3 11 9e-07 0.0009 19.6 8.2 1 23 309 331 309 331 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF366-201 - 744 7.6e-46 152.1 97.2 4 11 4.4e-06 0.0044 17.4 0.3 1 23 337 359 337 359 0.95 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF366-201 - 744 7.6e-46 152.1 97.2 5 11 1.3e-05 0.013 15.9 0.1 3 23 367 387 366 387 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF366-201 - 744 7.6e-46 152.1 97.2 6 11 3.3e-08 3.2e-05 24.1 1.5 1 23 393 415 393 415 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF366-201 - 744 7.6e-46 152.1 97.2 7 11 4e-06 0.004 17.5 2.1 1 23 421 443 421 443 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF366-201 - 744 7.6e-46 152.1 97.2 8 11 1.3e-05 0.013 15.9 0.4 1 23 449 471 449 471 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF366-201 - 744 7.6e-46 152.1 97.2 9 11 3.2e-07 0.00031 21.0 2.4 1 23 477 499 477 499 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF366-201 - 744 7.6e-46 152.1 97.2 10 11 4.4e-06 0.0044 17.4 4.4 1 23 505 527 505 527 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF366-201 - 744 7.6e-46 152.1 97.2 11 11 4e-06 0.004 17.5 2.0 1 23 533 556 533 556 0.98 Zinc finger, C2H2 type zf-H2C2_2 PF13465.6 26 ZNF366-201 - 744 6.3e-38 127.5 82.7 1 12 0.0014 1.3 9.5 0.2 12 26 250 264 248 264 0.89 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF366-201 - 744 6.3e-38 127.5 82.7 2 12 1.1e-06 0.0011 19.3 0.6 1 26 267 292 267 292 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF366-201 - 744 6.3e-38 127.5 82.7 3 12 6.6e-06 0.0065 16.8 6.5 4 25 298 319 295 320 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF366-201 - 744 6.3e-38 127.5 82.7 4 12 1.5e-06 0.0015 18.8 2.2 1 25 323 347 323 348 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF366-201 - 744 6.3e-38 127.5 82.7 5 12 3.4 3.4e+03 -1.2 0.0 2 10 352 360 351 371 0.70 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF366-201 - 744 6.3e-38 127.5 82.7 6 12 1e-07 0.0001 22.5 0.6 2 24 380 402 379 404 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF366-201 - 744 6.3e-38 127.5 82.7 7 12 0.0002 0.2 12.1 0.1 2 25 408 431 407 432 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF366-201 - 744 6.3e-38 127.5 82.7 8 12 5.7e-05 0.057 13.9 2.6 1 25 435 459 435 459 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF366-201 - 744 6.3e-38 127.5 82.7 9 12 1.2e-06 0.0012 19.2 0.7 1 25 463 487 463 488 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF366-201 - 744 6.3e-38 127.5 82.7 10 12 1.7e-08 1.7e-05 25.0 0.6 2 25 492 515 491 516 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF366-201 - 744 6.3e-38 127.5 82.7 11 12 3.7e-05 0.037 14.5 2.2 1 25 519 543 519 543 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF366-201 - 744 6.3e-38 127.5 82.7 12 12 0.043 42 4.8 0.2 1 10 547 556 547 560 0.79 Zinc-finger double domain zf-C2H2_4 PF13894.6 24 ZNF366-201 - 744 8.3e-34 113.3 92.7 1 11 1.7e-05 0.017 15.9 0.3 2 23 254 275 253 276 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF366-201 - 744 8.3e-34 113.3 92.7 2 11 9.2e-05 0.091 13.6 6.8 1 23 281 303 281 304 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF366-201 - 744 8.3e-34 113.3 92.7 3 11 0.00025 0.25 12.3 7.0 1 23 309 331 309 332 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF366-201 - 744 8.3e-34 113.3 92.7 4 11 2.7e-05 0.027 15.3 0.3 1 23 337 359 337 360 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF366-201 - 744 8.3e-34 113.3 92.7 5 11 6.7e-05 0.067 14.1 0.1 2 23 366 387 365 388 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF366-201 - 744 8.3e-34 113.3 92.7 6 11 1.9e-06 0.0018 18.9 1.2 1 23 393 415 393 416 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF366-201 - 744 8.3e-34 113.3 92.7 7 11 6.2e-05 0.062 14.2 2.5 1 23 421 443 421 444 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF366-201 - 744 8.3e-34 113.3 92.7 8 11 7.3e-05 0.072 14.0 0.4 1 23 449 471 449 472 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF366-201 - 744 8.3e-34 113.3 92.7 9 11 7.1e-06 0.0071 17.1 2.3 1 23 477 499 477 500 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF366-201 - 744 8.3e-34 113.3 92.7 10 11 3.7e-05 0.037 14.9 3.3 1 23 505 527 505 528 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF366-201 - 744 8.3e-34 113.3 92.7 11 11 6.8e-05 0.068 14.0 1.7 1 24 533 556 533 556 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF366-201 - 744 4.1e-11 42.6 83.4 1 11 6.1 6.1e+03 -2.6 0.1 5 17 130 142 130 143 0.79 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF366-201 - 744 4.1e-11 42.6 83.4 2 11 0.00072 0.72 9.9 0.2 3 20 254 271 252 271 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF366-201 - 744 4.1e-11 42.6 83.4 3 11 0.18 1.8e+02 2.3 8.2 2 25 281 304 281 305 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF366-201 - 744 4.1e-11 42.6 83.4 4 11 0.0051 5.1 7.2 5.1 2 24 309 331 309 334 0.81 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF366-201 - 744 4.1e-11 42.6 83.4 5 11 0.0078 7.8 6.6 0.6 2 24 337 359 337 361 0.90 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF366-201 - 744 4.1e-11 42.6 83.4 6 11 0.00083 0.83 9.7 0.0 3 26 366 389 366 390 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF366-201 - 744 4.1e-11 42.6 83.4 7 11 1.4e-05 0.014 15.4 0.5 2 25 393 416 392 418 0.87 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF366-201 - 744 4.1e-11 42.6 83.4 8 11 0.047 47 4.2 0.1 2 11 421 430 421 432 0.89 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF366-201 - 744 4.1e-11 42.6 83.4 9 11 0.038 37 4.5 0.1 2 12 449 459 448 467 0.88 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF366-201 - 744 4.1e-11 42.6 83.4 10 11 0.00025 0.25 11.4 1.3 1 25 476 500 476 502 0.91 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF366-201 - 744 4.1e-11 42.6 83.4 11 11 1.3e-06 0.0013 18.6 3.1 2 24 505 527 505 530 0.90 C2H2-type zinc finger zf-C2H2_jaz PF12171.8 27 ZNF366-201 - 744 8.9e-09 35.4 57.8 1 11 0.00021 0.21 11.9 0.1 4 24 255 275 252 282 0.89 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF366-201 - 744 8.9e-09 35.4 57.8 2 11 0.044 44 4.5 2.0 2 24 281 303 280 304 0.89 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF366-201 - 744 8.9e-09 35.4 57.8 3 11 0.068 68 3.9 1.5 2 21 309 328 308 328 0.84 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF366-201 - 744 8.9e-09 35.4 57.8 4 11 0.031 31 5.0 0.0 2 21 337 356 336 360 0.91 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF366-201 - 744 8.9e-09 35.4 57.8 5 11 0.0044 4.4 7.7 0.0 3 24 366 387 364 388 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF366-201 - 744 8.9e-09 35.4 57.8 6 11 1.7e-05 0.017 15.4 2.8 1 21 392 412 392 415 0.97 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF366-201 - 744 8.9e-09 35.4 57.8 7 11 0.53 5.3e+02 1.1 0.5 2 20 421 439 420 444 0.88 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF366-201 - 744 8.9e-09 35.4 57.8 8 11 1.4 1.4e+03 -0.2 0.0 2 11 449 458 448 468 0.81 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF366-201 - 744 8.9e-09 35.4 57.8 9 11 0.23 2.3e+02 2.2 1.9 4 21 479 496 477 497 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF366-201 - 744 8.9e-09 35.4 57.8 10 11 2.5e-05 0.025 14.9 0.3 2 21 505 524 504 525 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF366-201 - 744 8.9e-09 35.4 57.8 11 11 0.83 8.3e+02 0.5 0.1 2 11 533 542 532 553 0.70 Zinc-finger double-stranded RNA-binding # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF366-201.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF366-201.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF366-201.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF366-201.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF366-201.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:05:01 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF366-202.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF366-202.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF366-202.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF366-202.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF366-202.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:05:02 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF366-203.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF366-203.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF366-203.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF366-203.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF366-203.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:05:02 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZNF367-201 - 350 9.3e-14 51.1 7.1 1 3 0.23 5.2e+02 1.4 0.0 12 24 164 176 159 178 0.79 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF367-201 - 350 9.3e-14 51.1 7.1 2 3 6.2e-10 1.4e-06 28.4 0.2 1 25 181 207 181 208 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF367-201 - 350 9.3e-14 51.1 7.1 3 3 3.6e-08 8.1e-05 22.9 1.1 2 26 212 238 211 238 0.91 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZNF367-201 - 350 3.3e-10 39.9 10.3 1 3 2e-08 4.5e-05 23.7 0.7 2 23 168 189 167 189 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF367-201 - 350 3.3e-10 39.9 10.3 2 3 6.4e-08 0.00014 22.1 0.2 2 23 196 219 195 219 0.93 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF367-201 - 350 3.3e-10 39.9 10.3 3 3 2.9 6.5e+03 -2.0 0.3 1 12 225 238 225 242 0.62 Zinc finger, C2H2 type # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF367-201.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF367-201.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF367-201.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF367-201.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF367-201.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:05:02 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZNF37A-201 - 561 9.9e-74 240.7 89.3 1 13 0.73 6.9e+02 1.0 0.0 12 24 143 155 132 156 0.70 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF37A-201 - 561 9.9e-74 240.7 89.3 2 13 3.5 3.3e+03 -1.2 0.6 5 17 191 205 189 207 0.85 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF37A-201 - 561 9.9e-74 240.7 89.3 3 13 2.7e-10 2.6e-07 30.8 1.4 2 25 256 281 255 282 0.86 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF37A-201 - 561 9.9e-74 240.7 89.3 4 13 7.6e-09 7.2e-06 26.2 5.2 3 24 287 308 287 310 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF37A-201 - 561 9.9e-74 240.7 89.3 5 13 5.1e-09 4.8e-06 26.8 0.5 2 25 314 337 313 338 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF37A-201 - 561 9.9e-74 240.7 89.3 6 13 2.7e-11 2.6e-08 33.9 2.4 2 25 342 365 341 365 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF37A-201 - 561 9.9e-74 240.7 89.3 7 13 6.1e-11 5.7e-08 32.8 0.7 2 25 370 393 370 394 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF37A-201 - 561 9.9e-74 240.7 89.3 8 13 1.1e-11 1e-08 35.2 0.2 2 25 398 421 397 422 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF37A-201 - 561 9.9e-74 240.7 89.3 9 13 3e-11 2.9e-08 33.8 1.4 2 24 426 448 425 448 0.97 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF37A-201 - 561 9.9e-74 240.7 89.3 10 13 6.4e-09 6e-06 26.4 0.9 2 25 454 477 453 478 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF37A-201 - 561 9.9e-74 240.7 89.3 11 13 8.4e-06 0.0079 16.6 0.1 2 24 482 504 481 504 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF37A-201 - 561 9.9e-74 240.7 89.3 12 13 1.2e-09 1.1e-06 28.8 1.9 2 24 510 532 509 533 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF37A-201 - 561 9.9e-74 240.7 89.3 13 13 0.23 2.2e+02 2.5 0.1 2 15 538 551 537 553 0.87 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZNF37A-201 - 561 1.8e-53 176.1 103.2 1 14 9 8.5e+03 -2.4 0.0 9 16 72 79 71 79 0.87 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF37A-201 - 561 1.8e-53 176.1 103.2 2 14 0.0029 2.7 8.6 0.0 5 21 150 166 149 167 0.93 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF37A-201 - 561 1.8e-53 176.1 103.2 3 14 2.3 2.2e+03 -0.5 1.1 5 23 182 195 173 195 0.67 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF37A-201 - 561 1.8e-53 176.1 103.2 4 14 4.9 4.6e+03 -1.6 0.1 5 19 247 259 246 265 0.64 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF37A-201 - 561 1.8e-53 176.1 103.2 5 14 3.7e-07 0.00035 20.9 5.6 1 23 271 293 271 293 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF37A-201 - 561 1.8e-53 176.1 103.2 6 14 2.8e-09 2.7e-06 27.5 2.1 1 23 299 321 299 321 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF37A-201 - 561 1.8e-53 176.1 103.2 7 14 2e-08 1.9e-05 24.9 2.5 3 23 329 349 327 349 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF37A-201 - 561 1.8e-53 176.1 103.2 8 14 3.2e-08 3e-05 24.2 2.7 1 23 355 377 355 377 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF37A-201 - 561 1.8e-53 176.1 103.2 9 14 1.2e-06 0.0011 19.3 0.3 1 23 383 405 383 405 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF37A-201 - 561 1.8e-53 176.1 103.2 10 14 9.2e-10 8.7e-07 29.1 1.3 1 23 411 433 411 433 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF37A-201 - 561 1.8e-53 176.1 103.2 11 14 0.00045 0.43 11.1 3.3 1 23 439 461 439 461 0.95 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF37A-201 - 561 1.8e-53 176.1 103.2 12 14 5.5e-09 5.2e-06 26.6 0.4 3 23 469 489 467 489 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF37A-201 - 561 1.8e-53 176.1 103.2 13 14 2.7e-06 0.0026 18.1 3.9 3 23 497 517 495 517 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF37A-201 - 561 1.8e-53 176.1 103.2 14 14 1.2e-08 1.1e-05 25.6 0.7 1 23 523 545 523 545 0.98 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZNF37A-201 - 561 2.6e-30 102.5 92.3 1 12 0.38 3.6e+02 2.5 0.0 5 21 150 166 149 167 0.89 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF37A-201 - 561 2.6e-30 102.5 92.3 2 12 8.4 7.9e+03 -1.7 0.6 10 23 183 195 173 196 0.64 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF37A-201 - 561 2.6e-30 102.5 92.3 3 12 4.2e-05 0.04 14.8 4.0 1 23 271 293 271 294 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF37A-201 - 561 2.6e-30 102.5 92.3 4 12 4.8e-05 0.046 14.6 1.3 1 23 299 321 299 322 0.91 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF37A-201 - 561 2.6e-30 102.5 92.3 5 12 4.8e-06 0.0045 17.7 2.0 2 23 328 349 327 350 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF37A-201 - 561 2.6e-30 102.5 92.3 6 12 2.3e-05 0.022 15.6 2.5 1 23 355 377 355 378 0.87 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF37A-201 - 561 2.6e-30 102.5 92.3 7 12 5.3e-05 0.05 14.5 0.3 1 23 383 405 383 406 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF37A-201 - 561 2.6e-30 102.5 92.3 8 12 1.9e-07 0.00018 22.1 1.0 1 23 411 433 411 434 0.97 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF37A-201 - 561 2.6e-30 102.5 92.3 9 12 0.00033 0.31 12.0 3.1 1 23 439 461 439 462 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF37A-201 - 561 2.6e-30 102.5 92.3 10 12 6.7e-06 0.0063 17.3 0.2 1 23 467 489 467 490 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF37A-201 - 561 2.6e-30 102.5 92.3 11 12 9.2e-05 0.086 13.7 3.3 2 23 496 517 495 518 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF37A-201 - 561 2.6e-30 102.5 92.3 12 12 7.8e-05 0.073 13.9 0.6 1 23 523 545 523 546 0.92 C2H2-type zinc finger KRAB PF01352.27 42 ZNF37A-201 - 561 1.1e-25 89.0 0.1 1 1 2.4e-28 2.3e-25 88.0 0.1 1 42 7 48 7 48 0.99 KRAB box zf-C2H2_6 PF13912.6 27 ZNF37A-201 - 561 4.5e-12 45.7 88.1 1 11 0.92 8.7e+02 0.1 0.0 5 12 149 156 149 156 0.88 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF37A-201 - 561 4.5e-12 45.7 88.1 2 11 0.00061 0.58 10.2 1.4 2 12 271 281 271 284 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF37A-201 - 561 4.5e-12 45.7 88.1 3 11 0.00012 0.11 12.5 1.4 2 24 299 321 299 324 0.87 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF37A-201 - 561 4.5e-12 45.7 88.1 4 11 0.002 1.9 8.6 2.8 2 24 327 349 327 352 0.82 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF37A-201 - 561 4.5e-12 45.7 88.1 5 11 0.00028 0.26 11.3 2.9 2 24 355 377 355 380 0.86 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF37A-201 - 561 4.5e-12 45.7 88.1 6 11 0.13 1.2e+02 2.8 0.3 2 22 383 403 383 407 0.82 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF37A-201 - 561 4.5e-12 45.7 88.1 7 11 7.7e-06 0.0073 16.3 1.9 2 24 411 433 411 436 0.95 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF37A-201 - 561 4.5e-12 45.7 88.1 8 11 0.013 12 6.0 3.6 2 24 439 461 439 464 0.95 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF37A-201 - 561 4.5e-12 45.7 88.1 9 11 4.6e-05 0.043 13.8 0.3 2 24 467 489 467 492 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF37A-201 - 561 4.5e-12 45.7 88.1 10 11 0.13 1.3e+02 2.8 5.2 2 11 495 504 495 519 0.80 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF37A-201 - 561 4.5e-12 45.7 88.1 11 11 0.00085 0.8 9.8 1.3 2 11 523 532 523 533 0.97 C2H2-type zinc finger Zn-ribbon_8 PF09723.10 40 ZNF37A-201 - 561 1.9e-09 37.5 53.1 1 7 8.8 8.3e+03 -3.0 0.5 11 22 104 114 102 119 0.72 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF37A-201 - 561 1.9e-09 37.5 53.1 2 7 0.00094 0.89 9.7 0.4 6 17 271 282 246 294 0.83 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF37A-201 - 561 1.9e-09 37.5 53.1 3 7 2.8e-05 0.026 14.6 3.5 6 34 299 334 298 340 0.92 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF37A-201 - 561 1.9e-09 37.5 53.1 4 7 5e-06 0.0047 17.0 2.1 6 36 355 392 354 396 0.89 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF37A-201 - 561 1.9e-09 37.5 53.1 5 7 0.0072 6.7 6.9 6.0 6 34 411 446 410 449 0.81 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF37A-201 - 561 1.9e-09 37.5 53.1 6 7 0.012 12 6.2 7.6 6 34 467 502 438 508 0.91 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF37A-201 - 561 1.9e-09 37.5 53.1 7 7 0.022 20 5.4 0.1 6 17 523 534 522 545 0.83 Zinc ribbon domain zf-C2H2_jaz PF12171.8 27 ZNF37A-201 - 561 3.1e-09 36.9 55.4 1 10 1.9 1.8e+03 -0.6 0.0 7 23 151 167 150 167 0.90 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF37A-201 - 561 3.1e-09 36.9 55.4 2 10 0.0033 3.2 8.2 1.3 2 24 271 293 270 293 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF37A-201 - 561 3.1e-09 36.9 55.4 3 10 0.00065 0.62 10.4 0.8 2 22 299 319 298 319 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF37A-201 - 561 3.1e-09 36.9 55.4 4 10 0.00052 0.49 10.7 1.3 4 24 329 349 327 349 0.95 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF37A-201 - 561 3.1e-09 36.9 55.4 5 10 0.0017 1.6 9.1 1.0 2 24 355 377 354 377 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF37A-201 - 561 3.1e-09 36.9 55.4 6 10 0.0033 3.1 8.2 0.1 2 22 383 403 382 403 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF37A-201 - 561 3.1e-09 36.9 55.4 7 10 4.9e-05 0.047 14.0 0.4 2 24 411 433 410 433 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF37A-201 - 561 3.1e-09 36.9 55.4 8 10 0.73 6.9e+02 0.7 0.9 2 11 439 448 438 448 0.90 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF37A-201 - 561 3.1e-09 36.9 55.4 9 10 0.011 11 6.5 0.1 4 24 469 489 466 490 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF37A-201 - 561 3.1e-09 36.9 55.4 10 10 0.24 2.3e+02 2.3 0.2 2 11 523 532 522 543 0.80 Zinc-finger double-stranded RNA-binding C1_4 PF07975.12 55 ZNF37A-201 - 561 2.4e-07 30.9 46.4 1 6 0.00028 0.26 11.5 5.3 1 50 272 323 272 331 0.82 TFIIH C1-like domain C1_4 PF07975.12 55 ZNF37A-201 - 561 2.4e-07 30.9 46.4 2 6 0.0014 1.3 9.3 3.1 2 49 329 378 327 380 0.82 TFIIH C1-like domain C1_4 PF07975.12 55 ZNF37A-201 - 561 2.4e-07 30.9 46.4 3 6 0.00038 0.36 11.1 0.9 1 35 384 420 384 422 0.83 TFIIH C1-like domain C1_4 PF07975.12 55 ZNF37A-201 - 561 2.4e-07 30.9 46.4 4 6 0.046 44 4.4 1.7 20 36 433 449 420 452 0.77 TFIIH C1-like domain C1_4 PF07975.12 55 ZNF37A-201 - 561 2.4e-07 30.9 46.4 5 6 0.00013 0.12 12.6 3.2 2 49 469 518 466 521 0.82 TFIIH C1-like domain C1_4 PF07975.12 55 ZNF37A-201 - 561 2.4e-07 30.9 46.4 6 6 0.016 15 5.9 0.1 24 48 521 545 515 547 0.89 TFIIH C1-like domain # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF37A-201.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF37A-201.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF37A-201.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF37A-201.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF37A-201.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:05:03 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZNF37A-202 - 561 9.9e-74 240.7 89.3 1 13 0.73 6.9e+02 1.0 0.0 12 24 143 155 132 156 0.70 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF37A-202 - 561 9.9e-74 240.7 89.3 2 13 3.5 3.3e+03 -1.2 0.6 5 17 191 205 189 207 0.85 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF37A-202 - 561 9.9e-74 240.7 89.3 3 13 2.7e-10 2.6e-07 30.8 1.4 2 25 256 281 255 282 0.86 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF37A-202 - 561 9.9e-74 240.7 89.3 4 13 7.6e-09 7.2e-06 26.2 5.2 3 24 287 308 287 310 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF37A-202 - 561 9.9e-74 240.7 89.3 5 13 5.1e-09 4.8e-06 26.8 0.5 2 25 314 337 313 338 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF37A-202 - 561 9.9e-74 240.7 89.3 6 13 2.7e-11 2.6e-08 33.9 2.4 2 25 342 365 341 365 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF37A-202 - 561 9.9e-74 240.7 89.3 7 13 6.1e-11 5.7e-08 32.8 0.7 2 25 370 393 370 394 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF37A-202 - 561 9.9e-74 240.7 89.3 8 13 1.1e-11 1e-08 35.2 0.2 2 25 398 421 397 422 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF37A-202 - 561 9.9e-74 240.7 89.3 9 13 3e-11 2.9e-08 33.8 1.4 2 24 426 448 425 448 0.97 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF37A-202 - 561 9.9e-74 240.7 89.3 10 13 6.4e-09 6e-06 26.4 0.9 2 25 454 477 453 478 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF37A-202 - 561 9.9e-74 240.7 89.3 11 13 8.4e-06 0.0079 16.6 0.1 2 24 482 504 481 504 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF37A-202 - 561 9.9e-74 240.7 89.3 12 13 1.2e-09 1.1e-06 28.8 1.9 2 24 510 532 509 533 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF37A-202 - 561 9.9e-74 240.7 89.3 13 13 0.23 2.2e+02 2.5 0.1 2 15 538 551 537 553 0.87 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZNF37A-202 - 561 1.8e-53 176.1 103.2 1 14 9 8.5e+03 -2.4 0.0 9 16 72 79 71 79 0.87 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF37A-202 - 561 1.8e-53 176.1 103.2 2 14 0.0029 2.7 8.6 0.0 5 21 150 166 149 167 0.93 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF37A-202 - 561 1.8e-53 176.1 103.2 3 14 2.3 2.2e+03 -0.5 1.1 5 23 182 195 173 195 0.67 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF37A-202 - 561 1.8e-53 176.1 103.2 4 14 4.9 4.6e+03 -1.6 0.1 5 19 247 259 246 265 0.64 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF37A-202 - 561 1.8e-53 176.1 103.2 5 14 3.7e-07 0.00035 20.9 5.6 1 23 271 293 271 293 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF37A-202 - 561 1.8e-53 176.1 103.2 6 14 2.8e-09 2.7e-06 27.5 2.1 1 23 299 321 299 321 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF37A-202 - 561 1.8e-53 176.1 103.2 7 14 2e-08 1.9e-05 24.9 2.5 3 23 329 349 327 349 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF37A-202 - 561 1.8e-53 176.1 103.2 8 14 3.2e-08 3e-05 24.2 2.7 1 23 355 377 355 377 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF37A-202 - 561 1.8e-53 176.1 103.2 9 14 1.2e-06 0.0011 19.3 0.3 1 23 383 405 383 405 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF37A-202 - 561 1.8e-53 176.1 103.2 10 14 9.2e-10 8.7e-07 29.1 1.3 1 23 411 433 411 433 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF37A-202 - 561 1.8e-53 176.1 103.2 11 14 0.00045 0.43 11.1 3.3 1 23 439 461 439 461 0.95 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF37A-202 - 561 1.8e-53 176.1 103.2 12 14 5.5e-09 5.2e-06 26.6 0.4 3 23 469 489 467 489 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF37A-202 - 561 1.8e-53 176.1 103.2 13 14 2.7e-06 0.0026 18.1 3.9 3 23 497 517 495 517 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF37A-202 - 561 1.8e-53 176.1 103.2 14 14 1.2e-08 1.1e-05 25.6 0.7 1 23 523 545 523 545 0.98 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZNF37A-202 - 561 2.6e-30 102.5 92.3 1 12 0.38 3.6e+02 2.5 0.0 5 21 150 166 149 167 0.89 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF37A-202 - 561 2.6e-30 102.5 92.3 2 12 8.4 7.9e+03 -1.7 0.6 10 23 183 195 173 196 0.64 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF37A-202 - 561 2.6e-30 102.5 92.3 3 12 4.2e-05 0.04 14.8 4.0 1 23 271 293 271 294 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF37A-202 - 561 2.6e-30 102.5 92.3 4 12 4.8e-05 0.046 14.6 1.3 1 23 299 321 299 322 0.91 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF37A-202 - 561 2.6e-30 102.5 92.3 5 12 4.8e-06 0.0045 17.7 2.0 2 23 328 349 327 350 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF37A-202 - 561 2.6e-30 102.5 92.3 6 12 2.3e-05 0.022 15.6 2.5 1 23 355 377 355 378 0.87 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF37A-202 - 561 2.6e-30 102.5 92.3 7 12 5.3e-05 0.05 14.5 0.3 1 23 383 405 383 406 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF37A-202 - 561 2.6e-30 102.5 92.3 8 12 1.9e-07 0.00018 22.1 1.0 1 23 411 433 411 434 0.97 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF37A-202 - 561 2.6e-30 102.5 92.3 9 12 0.00033 0.31 12.0 3.1 1 23 439 461 439 462 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF37A-202 - 561 2.6e-30 102.5 92.3 10 12 6.7e-06 0.0063 17.3 0.2 1 23 467 489 467 490 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF37A-202 - 561 2.6e-30 102.5 92.3 11 12 9.2e-05 0.086 13.7 3.3 2 23 496 517 495 518 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF37A-202 - 561 2.6e-30 102.5 92.3 12 12 7.8e-05 0.073 13.9 0.6 1 23 523 545 523 546 0.92 C2H2-type zinc finger KRAB PF01352.27 42 ZNF37A-202 - 561 1.1e-25 89.0 0.1 1 1 2.4e-28 2.3e-25 88.0 0.1 1 42 7 48 7 48 0.99 KRAB box zf-C2H2_6 PF13912.6 27 ZNF37A-202 - 561 4.5e-12 45.7 88.1 1 11 0.92 8.7e+02 0.1 0.0 5 12 149 156 149 156 0.88 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF37A-202 - 561 4.5e-12 45.7 88.1 2 11 0.00061 0.58 10.2 1.4 2 12 271 281 271 284 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF37A-202 - 561 4.5e-12 45.7 88.1 3 11 0.00012 0.11 12.5 1.4 2 24 299 321 299 324 0.87 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF37A-202 - 561 4.5e-12 45.7 88.1 4 11 0.002 1.9 8.6 2.8 2 24 327 349 327 352 0.82 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF37A-202 - 561 4.5e-12 45.7 88.1 5 11 0.00028 0.26 11.3 2.9 2 24 355 377 355 380 0.86 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF37A-202 - 561 4.5e-12 45.7 88.1 6 11 0.13 1.2e+02 2.8 0.3 2 22 383 403 383 407 0.82 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF37A-202 - 561 4.5e-12 45.7 88.1 7 11 7.7e-06 0.0073 16.3 1.9 2 24 411 433 411 436 0.95 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF37A-202 - 561 4.5e-12 45.7 88.1 8 11 0.013 12 6.0 3.6 2 24 439 461 439 464 0.95 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF37A-202 - 561 4.5e-12 45.7 88.1 9 11 4.6e-05 0.043 13.8 0.3 2 24 467 489 467 492 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF37A-202 - 561 4.5e-12 45.7 88.1 10 11 0.13 1.3e+02 2.8 5.2 2 11 495 504 495 519 0.80 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF37A-202 - 561 4.5e-12 45.7 88.1 11 11 0.00085 0.8 9.8 1.3 2 11 523 532 523 533 0.97 C2H2-type zinc finger Zn-ribbon_8 PF09723.10 40 ZNF37A-202 - 561 1.9e-09 37.5 53.1 1 7 8.8 8.3e+03 -3.0 0.5 11 22 104 114 102 119 0.72 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF37A-202 - 561 1.9e-09 37.5 53.1 2 7 0.00094 0.89 9.7 0.4 6 17 271 282 246 294 0.83 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF37A-202 - 561 1.9e-09 37.5 53.1 3 7 2.8e-05 0.026 14.6 3.5 6 34 299 334 298 340 0.92 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF37A-202 - 561 1.9e-09 37.5 53.1 4 7 5e-06 0.0047 17.0 2.1 6 36 355 392 354 396 0.89 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF37A-202 - 561 1.9e-09 37.5 53.1 5 7 0.0072 6.7 6.9 6.0 6 34 411 446 410 449 0.81 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF37A-202 - 561 1.9e-09 37.5 53.1 6 7 0.012 12 6.2 7.6 6 34 467 502 438 508 0.91 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF37A-202 - 561 1.9e-09 37.5 53.1 7 7 0.022 20 5.4 0.1 6 17 523 534 522 545 0.83 Zinc ribbon domain zf-C2H2_jaz PF12171.8 27 ZNF37A-202 - 561 3.1e-09 36.9 55.4 1 10 1.9 1.8e+03 -0.6 0.0 7 23 151 167 150 167 0.90 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF37A-202 - 561 3.1e-09 36.9 55.4 2 10 0.0033 3.2 8.2 1.3 2 24 271 293 270 293 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF37A-202 - 561 3.1e-09 36.9 55.4 3 10 0.00065 0.62 10.4 0.8 2 22 299 319 298 319 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF37A-202 - 561 3.1e-09 36.9 55.4 4 10 0.00052 0.49 10.7 1.3 4 24 329 349 327 349 0.95 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF37A-202 - 561 3.1e-09 36.9 55.4 5 10 0.0017 1.6 9.1 1.0 2 24 355 377 354 377 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF37A-202 - 561 3.1e-09 36.9 55.4 6 10 0.0033 3.1 8.2 0.1 2 22 383 403 382 403 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF37A-202 - 561 3.1e-09 36.9 55.4 7 10 4.9e-05 0.047 14.0 0.4 2 24 411 433 410 433 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF37A-202 - 561 3.1e-09 36.9 55.4 8 10 0.73 6.9e+02 0.7 0.9 2 11 439 448 438 448 0.90 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF37A-202 - 561 3.1e-09 36.9 55.4 9 10 0.011 11 6.5 0.1 4 24 469 489 466 490 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF37A-202 - 561 3.1e-09 36.9 55.4 10 10 0.24 2.3e+02 2.3 0.2 2 11 523 532 522 543 0.80 Zinc-finger double-stranded RNA-binding C1_4 PF07975.12 55 ZNF37A-202 - 561 2.4e-07 30.9 46.4 1 6 0.00028 0.26 11.5 5.3 1 50 272 323 272 331 0.82 TFIIH C1-like domain C1_4 PF07975.12 55 ZNF37A-202 - 561 2.4e-07 30.9 46.4 2 6 0.0014 1.3 9.3 3.1 2 49 329 378 327 380 0.82 TFIIH C1-like domain C1_4 PF07975.12 55 ZNF37A-202 - 561 2.4e-07 30.9 46.4 3 6 0.00038 0.36 11.1 0.9 1 35 384 420 384 422 0.83 TFIIH C1-like domain C1_4 PF07975.12 55 ZNF37A-202 - 561 2.4e-07 30.9 46.4 4 6 0.046 44 4.4 1.7 20 36 433 449 420 452 0.77 TFIIH C1-like domain C1_4 PF07975.12 55 ZNF37A-202 - 561 2.4e-07 30.9 46.4 5 6 0.00013 0.12 12.6 3.2 2 49 469 518 466 521 0.82 TFIIH C1-like domain C1_4 PF07975.12 55 ZNF37A-202 - 561 2.4e-07 30.9 46.4 6 6 0.016 15 5.9 0.1 24 48 521 545 515 547 0.89 TFIIH C1-like domain # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF37A-202.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF37A-202.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF37A-202.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF37A-202.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF37A-202.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:05:04 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- KRAB PF01352.27 42 ZNF37A-203 - 120 1.3e-26 91.9 0.1 1 1 2.2e-30 2e-26 91.3 0.1 1 42 7 48 7 48 0.99 KRAB box # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF37A-203.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF37A-203.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF37A-203.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF37A-203.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF37A-203.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:05:04 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF37A-204.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF37A-204.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF37A-204.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF37A-204.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF37A-204.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:05:04 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF37A-205.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF37A-205.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF37A-205.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF37A-205.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF37A-205.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:05:04 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF37A-206.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF37A-206.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF37A-206.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF37A-206.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF37A-206.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:05:05 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZNF382-201 - 550 1.9e-53 176.6 74.5 1 12 1.5 1e+03 0.4 0.0 2 22 199 219 198 222 0.69 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF382-201 - 550 1.9e-53 176.6 74.5 2 12 0.86 5.7e+02 1.2 0.2 4 16 229 241 226 244 0.83 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF382-201 - 550 1.9e-53 176.6 74.5 3 12 0.00018 0.12 12.8 1.2 10 25 291 306 288 307 0.88 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF382-201 - 550 1.9e-53 176.6 74.5 4 12 5.3e-10 3.5e-07 30.4 0.2 2 25 311 334 310 335 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF382-201 - 550 1.9e-53 176.6 74.5 5 12 0.00012 0.077 13.5 0.1 1 25 338 362 338 363 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF382-201 - 550 1.9e-53 176.6 74.5 6 12 1.7e-09 1.1e-06 28.8 2.3 2 25 367 390 366 391 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF382-201 - 550 1.9e-53 176.6 74.5 7 12 6.3e-11 4.2e-08 33.3 0.2 2 24 395 417 394 419 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF382-201 - 550 1.9e-53 176.6 74.5 8 12 2.3e-08 1.5e-05 25.2 0.5 2 24 423 445 422 445 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF382-201 - 550 1.9e-53 176.6 74.5 9 12 1.3e-08 8.4e-06 26.0 0.3 2 25 451 474 450 475 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF382-201 - 550 1.9e-53 176.6 74.5 10 12 2.6e-05 0.018 15.5 0.5 2 25 479 502 479 503 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF382-201 - 550 1.9e-53 176.6 74.5 11 12 2.5e-11 1.7e-08 34.5 3.3 1 25 506 530 506 531 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF382-201 - 550 1.9e-53 176.6 74.5 12 12 0.6 4e+02 1.7 0.2 1 13 534 546 534 547 0.86 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZNF382-201 - 550 3.4e-48 159.5 80.2 1 10 0.057 38 5.0 0.9 5 23 216 234 214 234 0.93 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF382-201 - 550 3.4e-48 159.5 80.2 2 10 4.2e-07 0.00028 21.2 2.6 1 23 296 318 296 318 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF382-201 - 550 3.4e-48 159.5 80.2 3 10 1.6e-07 0.0001 22.5 0.5 1 23 324 346 324 346 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF382-201 - 550 3.4e-48 159.5 80.2 4 10 1.2e-06 0.00077 19.8 2.6 1 23 352 374 352 374 0.93 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF382-201 - 550 3.4e-48 159.5 80.2 5 10 2.5e-07 0.00017 21.9 0.6 1 23 380 402 380 402 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF382-201 - 550 3.4e-48 159.5 80.2 6 10 4.5e-09 3e-06 27.4 0.6 1 23 408 430 408 430 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF382-201 - 550 3.4e-48 159.5 80.2 7 10 8.7e-08 5.8e-05 23.3 2.5 1 23 436 458 436 458 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF382-201 - 550 3.4e-48 159.5 80.2 8 10 1.1e-06 0.00075 19.8 0.9 1 23 464 486 464 486 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF382-201 - 550 3.4e-48 159.5 80.2 9 10 2.6e-09 1.7e-06 28.1 1.1 3 23 494 514 494 514 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF382-201 - 550 3.4e-48 159.5 80.2 10 10 1.9e-06 0.0012 19.1 3.6 1 23 520 542 520 542 0.99 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZNF382-201 - 550 2.5e-32 108.8 70.4 1 10 0.086 57 4.9 0.3 5 23 216 234 215 235 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF382-201 - 550 2.5e-32 108.8 70.4 2 10 3.4e-05 0.022 15.5 1.6 1 23 296 318 296 319 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF382-201 - 550 2.5e-32 108.8 70.4 3 10 2.5e-05 0.017 15.9 0.3 1 23 324 346 324 347 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF382-201 - 550 2.5e-32 108.8 70.4 4 10 1.2e-05 0.0078 17.0 1.6 1 23 352 374 352 375 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF382-201 - 550 2.5e-32 108.8 70.4 5 10 1.6e-05 0.011 16.5 0.5 1 23 380 402 380 403 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF382-201 - 550 2.5e-32 108.8 70.4 6 10 2.8e-05 0.019 15.8 0.4 1 23 408 430 408 431 0.97 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF382-201 - 550 2.5e-32 108.8 70.4 7 10 0.00015 0.1 13.5 1.8 1 23 436 458 436 459 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF382-201 - 550 2.5e-32 108.8 70.4 8 10 0.00029 0.19 12.6 0.7 1 23 464 486 464 487 0.83 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF382-201 - 550 2.5e-32 108.8 70.4 9 10 4.5e-07 0.0003 21.4 0.5 3 23 494 514 493 515 0.97 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF382-201 - 550 2.5e-32 108.8 70.4 10 10 3.8e-06 0.0025 18.5 3.8 1 23 520 542 520 543 0.96 C2H2-type zinc finger KRAB PF01352.27 42 ZNF382-201 - 550 4.4e-25 87.0 1.7 1 2 7.2e-28 4.8e-25 86.9 0.4 1 42 6 47 6 47 0.99 KRAB box KRAB PF01352.27 42 ZNF382-201 - 550 4.4e-25 87.0 1.7 2 2 7.6 5e+03 -2.8 0.0 5 12 84 91 83 92 0.85 KRAB box Zn-ribbon_8 PF09723.10 40 ZNF382-201 - 550 1.8e-11 43.9 40.1 1 8 4.4 2.9e+03 -1.5 0.0 2 23 72 92 72 96 0.85 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF382-201 - 550 1.8e-11 43.9 40.1 2 8 0.025 16 5.7 0.1 25 38 293 307 282 309 0.73 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF382-201 - 550 1.8e-11 43.9 40.1 3 8 0.00016 0.1 12.7 1.5 6 38 296 335 295 337 0.91 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF382-201 - 550 1.8e-11 43.9 40.1 4 8 0.021 14 5.9 0.1 6 16 324 334 323 342 0.86 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF382-201 - 550 1.8e-11 43.9 40.1 5 8 2.9e-05 0.02 15.0 2.1 6 38 352 391 351 392 0.86 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF382-201 - 550 1.8e-11 43.9 40.1 6 8 0.00022 0.14 12.3 3.8 6 34 408 443 407 450 0.90 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF382-201 - 550 1.8e-11 43.9 40.1 7 8 1.4e-06 0.0009 19.3 1.1 6 38 464 503 463 504 0.91 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF382-201 - 550 1.8e-11 43.9 40.1 8 8 0.021 14 5.9 0.5 6 16 520 530 519 546 0.78 Zinc ribbon domain zf-C2H2_6 PF13912.6 27 ZNF382-201 - 550 1.3e-09 37.8 67.5 1 10 0.05 33 4.6 0.2 6 26 216 236 215 237 0.87 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF382-201 - 550 1.3e-09 37.8 67.5 2 10 0.074 49 4.1 0.5 2 20 296 314 296 320 0.76 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF382-201 - 550 1.3e-09 37.8 67.5 3 10 4.4e-05 0.029 14.4 0.5 2 24 324 346 324 348 0.97 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF382-201 - 550 1.3e-09 37.8 67.5 4 10 0.18 1.2e+02 2.9 1.0 2 24 352 374 352 377 0.79 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF382-201 - 550 1.3e-09 37.8 67.5 5 10 0.0043 2.9 8.0 0.3 1 24 379 402 379 405 0.85 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF382-201 - 550 1.3e-09 37.8 67.5 6 10 0.009 6 7.0 0.3 2 11 408 417 408 432 0.79 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF382-201 - 550 1.3e-09 37.8 67.5 7 10 0.0096 6.4 6.9 3.0 2 11 436 445 436 446 0.97 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF382-201 - 550 1.3e-09 37.8 67.5 8 10 0.00057 0.38 10.8 0.4 2 12 464 474 464 475 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF382-201 - 550 1.3e-09 37.8 67.5 9 10 0.00019 0.12 12.4 0.6 4 24 494 514 493 517 0.95 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF382-201 - 550 1.3e-09 37.8 67.5 10 10 0.0081 5.4 7.1 4.5 2 25 520 543 520 544 0.94 C2H2-type zinc finger DUF3268 PF11672.8 118 ZNF382-201 - 550 4.1e-08 33.6 26.1 1 5 3.7e-05 0.024 14.9 0.5 2 41 295 334 294 347 0.73 zinc-finger-containing domain DUF3268 PF11672.8 118 ZNF382-201 - 550 4.1e-08 33.6 26.1 2 5 0.0054 3.6 8.0 0.3 3 41 352 390 350 404 0.81 zinc-finger-containing domain DUF3268 PF11672.8 118 ZNF382-201 - 550 4.1e-08 33.6 26.1 3 5 0.00036 0.24 11.8 1.9 2 39 407 444 406 452 0.89 zinc-finger-containing domain DUF3268 PF11672.8 118 ZNF382-201 - 550 4.1e-08 33.6 26.1 4 5 0.041 27 5.1 0.5 8 41 441 474 440 482 0.87 zinc-finger-containing domain DUF3268 PF11672.8 118 ZNF382-201 - 550 4.1e-08 33.6 26.1 5 5 0.00041 0.27 11.6 1.2 3 45 492 534 490 545 0.77 zinc-finger-containing domain # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF382-201.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF382-201.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF382-201.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF382-201.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF382-201.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:05:05 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZNF382-202 - 501 3.8e-54 178.8 74.1 1 12 1.4 9.1e+02 0.6 0.0 2 22 150 170 149 173 0.69 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF382-202 - 501 3.8e-54 178.8 74.1 2 12 0.77 5.1e+02 1.4 0.2 4 16 180 192 177 195 0.83 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF382-202 - 501 3.8e-54 178.8 74.1 3 12 0.00016 0.11 13.0 1.2 10 25 242 257 239 258 0.88 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF382-202 - 501 3.8e-54 178.8 74.1 4 12 4.7e-10 3.1e-07 30.5 0.2 2 25 262 285 261 286 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF382-202 - 501 3.8e-54 178.8 74.1 5 12 0.0001 0.069 13.6 0.1 1 25 289 313 289 314 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF382-202 - 501 3.8e-54 178.8 74.1 6 12 1.5e-09 1e-06 28.9 2.3 2 25 318 341 317 342 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF382-202 - 501 3.8e-54 178.8 74.1 7 12 5.7e-11 3.8e-08 33.4 0.2 2 24 346 368 345 370 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF382-202 - 501 3.8e-54 178.8 74.1 8 12 2e-08 1.4e-05 25.3 0.5 2 24 374 396 373 396 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF382-202 - 501 3.8e-54 178.8 74.1 9 12 1.1e-08 7.5e-06 26.1 0.3 2 25 402 425 401 426 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF382-202 - 501 3.8e-54 178.8 74.1 10 12 2.4e-05 0.016 15.6 0.5 2 25 430 453 430 454 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF382-202 - 501 3.8e-54 178.8 74.1 11 12 2.2e-11 1.5e-08 34.7 3.3 1 25 457 481 457 482 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF382-202 - 501 3.8e-54 178.8 74.1 12 12 0.52 3.4e+02 1.9 0.1 1 13 485 497 485 499 0.87 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZNF382-202 - 501 1.1e-48 161.0 80.2 1 10 0.051 34 5.2 0.9 5 23 167 185 165 185 0.93 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF382-202 - 501 1.1e-48 161.0 80.2 2 10 3.7e-07 0.00025 21.3 2.6 1 23 247 269 247 269 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF382-202 - 501 1.1e-48 161.0 80.2 3 10 1.4e-07 9.3e-05 22.7 0.5 1 23 275 297 275 297 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF382-202 - 501 1.1e-48 161.0 80.2 4 10 1e-06 0.00069 19.9 2.6 1 23 303 325 303 325 0.93 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF382-202 - 501 1.1e-48 161.0 80.2 5 10 2.3e-07 0.00015 22.0 0.6 1 23 331 353 331 353 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF382-202 - 501 1.1e-48 161.0 80.2 6 10 4e-09 2.7e-06 27.5 0.6 1 23 359 381 359 381 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF382-202 - 501 1.1e-48 161.0 80.2 7 10 7.8e-08 5.2e-05 23.5 2.5 1 23 387 409 387 409 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF382-202 - 501 1.1e-48 161.0 80.2 8 10 1e-06 0.00067 20.0 0.9 1 23 415 437 415 437 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF382-202 - 501 1.1e-48 161.0 80.2 9 10 2.3e-09 1.5e-06 28.3 1.1 3 23 445 465 445 465 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF382-202 - 501 1.1e-48 161.0 80.2 10 10 1.7e-06 0.0011 19.3 3.6 1 23 471 493 471 493 0.99 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZNF382-202 - 501 1e-32 110.0 70.4 1 11 9.8 6.5e+03 -1.5 0.0 9 21 143 155 141 157 0.80 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF382-202 - 501 1e-32 110.0 70.4 2 11 0.077 51 5.1 0.3 5 23 167 185 166 186 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF382-202 - 501 1e-32 110.0 70.4 3 11 3e-05 0.02 15.7 1.6 1 23 247 269 247 270 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF382-202 - 501 1e-32 110.0 70.4 4 11 2.2e-05 0.015 16.1 0.3 1 23 275 297 275 298 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF382-202 - 501 1e-32 110.0 70.4 5 11 1e-05 0.007 17.1 1.6 1 23 303 325 303 326 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF382-202 - 501 1e-32 110.0 70.4 6 11 1.4e-05 0.0095 16.7 0.5 1 23 331 353 331 354 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF382-202 - 501 1e-32 110.0 70.4 7 11 2.5e-05 0.017 15.9 0.4 1 23 359 381 359 382 0.97 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF382-202 - 501 1e-32 110.0 70.4 8 11 0.00014 0.091 13.7 1.8 1 23 387 409 387 410 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF382-202 - 501 1e-32 110.0 70.4 9 11 0.00026 0.17 12.8 0.7 1 23 415 437 415 438 0.83 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF382-202 - 501 1e-32 110.0 70.4 10 11 4e-07 0.00027 21.5 0.5 3 23 445 465 444 466 0.97 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF382-202 - 501 1e-32 110.0 70.4 11 11 3.4e-06 0.0023 18.6 3.8 1 23 471 493 471 494 0.96 C2H2-type zinc finger Zn-ribbon_8 PF09723.10 40 ZNF382-202 - 501 1e-11 44.8 40.3 1 8 4 2.6e+03 -1.4 0.0 2 23 23 43 23 47 0.85 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF382-202 - 501 1e-11 44.8 40.3 2 8 0.022 15 5.8 0.1 25 38 244 258 233 260 0.73 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF382-202 - 501 1e-11 44.8 40.3 3 8 0.00015 0.097 12.8 1.6 6 38 247 286 246 288 0.91 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF382-202 - 501 1e-11 44.8 40.3 4 8 0.018 12 6.1 0.2 6 16 275 285 274 294 0.86 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF382-202 - 501 1e-11 44.8 40.3 5 8 2.6e-05 0.017 15.2 2.1 6 38 303 342 302 343 0.86 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF382-202 - 501 1e-11 44.8 40.3 6 8 0.00019 0.13 12.4 3.8 6 34 359 394 358 401 0.90 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF382-202 - 501 1e-11 44.8 40.3 7 8 1.2e-06 0.0008 19.5 1.1 6 38 415 454 414 455 0.91 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF382-202 - 501 1e-11 44.8 40.3 8 8 0.019 13 6.0 0.5 6 16 471 481 470 497 0.78 Zinc ribbon domain zf-C2H2_6 PF13912.6 27 ZNF382-202 - 501 4.5e-10 39.3 67.6 1 10 0.045 30 4.8 0.2 6 26 167 187 166 188 0.87 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF382-202 - 501 4.5e-10 39.3 67.6 2 10 0.066 44 4.2 0.5 2 20 247 265 247 271 0.76 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF382-202 - 501 4.5e-10 39.3 67.6 3 10 3.9e-05 0.026 14.5 0.5 2 24 275 297 275 299 0.97 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF382-202 - 501 4.5e-10 39.3 67.6 4 10 0.16 1.1e+02 3.0 1.0 2 24 303 325 303 328 0.79 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF382-202 - 501 4.5e-10 39.3 67.6 5 10 0.0039 2.6 8.2 0.3 1 24 330 353 330 356 0.85 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF382-202 - 501 4.5e-10 39.3 67.6 6 10 0.0081 5.4 7.1 0.3 2 11 359 368 359 383 0.79 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF382-202 - 501 4.5e-10 39.3 67.6 7 10 0.0087 5.8 7.0 3.0 2 11 387 396 387 397 0.97 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF382-202 - 501 4.5e-10 39.3 67.6 8 10 0.00052 0.34 10.9 0.4 2 12 415 425 415 426 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF382-202 - 501 4.5e-10 39.3 67.6 9 10 0.00017 0.11 12.5 0.6 4 24 445 465 444 468 0.95 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF382-202 - 501 4.5e-10 39.3 67.6 10 10 0.0072 4.8 7.3 4.5 2 25 471 494 471 495 0.94 C2H2-type zinc finger DUF3268 PF11672.8 118 ZNF382-202 - 501 2.4e-08 34.3 26.1 1 5 3.2e-05 0.022 15.1 0.5 2 41 246 285 245 298 0.73 zinc-finger-containing domain DUF3268 PF11672.8 118 ZNF382-202 - 501 2.4e-08 34.3 26.1 2 5 0.0048 3.2 8.1 0.3 3 41 303 341 301 355 0.81 zinc-finger-containing domain DUF3268 PF11672.8 118 ZNF382-202 - 501 2.4e-08 34.3 26.1 3 5 0.00031 0.21 11.9 1.9 2 39 358 395 357 403 0.89 zinc-finger-containing domain DUF3268 PF11672.8 118 ZNF382-202 - 501 2.4e-08 34.3 26.1 4 5 0.044 29 5.0 0.5 8 41 392 425 392 432 0.86 zinc-finger-containing domain DUF3268 PF11672.8 118 ZNF382-202 - 501 2.4e-08 34.3 26.1 5 5 0.00036 0.24 11.7 1.2 3 45 443 485 441 496 0.77 zinc-finger-containing domain # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF382-202.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF382-202.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF382-202.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF382-202.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF382-202.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:05:06 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZNF382-203 - 549 1.9e-53 176.6 74.5 1 12 1.5 1e+03 0.4 0.0 2 22 198 218 197 221 0.69 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF382-203 - 549 1.9e-53 176.6 74.5 2 12 0.86 5.7e+02 1.2 0.2 4 16 228 240 225 243 0.83 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF382-203 - 549 1.9e-53 176.6 74.5 3 12 0.00018 0.12 12.8 1.2 10 25 290 305 287 306 0.88 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF382-203 - 549 1.9e-53 176.6 74.5 4 12 5.2e-10 3.5e-07 30.4 0.2 2 25 310 333 309 334 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF382-203 - 549 1.9e-53 176.6 74.5 5 12 0.00012 0.077 13.5 0.1 1 25 337 361 337 362 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF382-203 - 549 1.9e-53 176.6 74.5 6 12 1.7e-09 1.1e-06 28.8 2.3 2 25 366 389 365 390 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF382-203 - 549 1.9e-53 176.6 74.5 7 12 6.3e-11 4.2e-08 33.3 0.2 2 24 394 416 393 418 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF382-203 - 549 1.9e-53 176.6 74.5 8 12 2.3e-08 1.5e-05 25.2 0.5 2 24 422 444 421 444 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF382-203 - 549 1.9e-53 176.6 74.5 9 12 1.3e-08 8.3e-06 26.0 0.3 2 25 450 473 449 474 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF382-203 - 549 1.9e-53 176.6 74.5 10 12 2.6e-05 0.018 15.5 0.5 2 25 478 501 478 502 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF382-203 - 549 1.9e-53 176.6 74.5 11 12 2.5e-11 1.7e-08 34.5 3.3 1 25 505 529 505 530 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF382-203 - 549 1.9e-53 176.6 74.5 12 12 0.6 4e+02 1.7 0.2 1 13 533 545 533 546 0.86 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZNF382-203 - 549 3.3e-48 159.5 80.2 1 10 0.057 38 5.0 0.9 5 23 215 233 213 233 0.93 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF382-203 - 549 3.3e-48 159.5 80.2 2 10 4.2e-07 0.00028 21.2 2.6 1 23 295 317 295 317 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF382-203 - 549 3.3e-48 159.5 80.2 3 10 1.6e-07 0.0001 22.5 0.5 1 23 323 345 323 345 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF382-203 - 549 3.3e-48 159.5 80.2 4 10 1.2e-06 0.00077 19.8 2.6 1 23 351 373 351 373 0.93 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF382-203 - 549 3.3e-48 159.5 80.2 5 10 2.5e-07 0.00017 21.9 0.6 1 23 379 401 379 401 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF382-203 - 549 3.3e-48 159.5 80.2 6 10 4.5e-09 3e-06 27.4 0.6 1 23 407 429 407 429 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF382-203 - 549 3.3e-48 159.5 80.2 7 10 8.7e-08 5.8e-05 23.3 2.5 1 23 435 457 435 457 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF382-203 - 549 3.3e-48 159.5 80.2 8 10 1.1e-06 0.00075 19.8 0.9 1 23 463 485 463 485 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF382-203 - 549 3.3e-48 159.5 80.2 9 10 2.6e-09 1.7e-06 28.1 1.1 3 23 493 513 493 513 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF382-203 - 549 3.3e-48 159.5 80.2 10 10 1.9e-06 0.0012 19.1 3.6 1 23 519 541 519 541 0.99 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZNF382-203 - 549 2.4e-32 108.8 70.4 1 10 0.086 57 4.9 0.3 5 23 215 233 214 234 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF382-203 - 549 2.4e-32 108.8 70.4 2 10 3.4e-05 0.022 15.5 1.6 1 23 295 317 295 318 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF382-203 - 549 2.4e-32 108.8 70.4 3 10 2.5e-05 0.017 15.9 0.3 1 23 323 345 323 346 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF382-203 - 549 2.4e-32 108.8 70.4 4 10 1.2e-05 0.0078 17.0 1.6 1 23 351 373 351 374 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF382-203 - 549 2.4e-32 108.8 70.4 5 10 1.6e-05 0.011 16.6 0.5 1 23 379 401 379 402 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF382-203 - 549 2.4e-32 108.8 70.4 6 10 2.8e-05 0.019 15.8 0.4 1 23 407 429 407 430 0.97 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF382-203 - 549 2.4e-32 108.8 70.4 7 10 0.00015 0.1 13.5 1.8 1 23 435 457 435 458 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF382-203 - 549 2.4e-32 108.8 70.4 8 10 0.00029 0.19 12.6 0.7 1 23 463 485 463 486 0.83 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF382-203 - 549 2.4e-32 108.8 70.4 9 10 4.5e-07 0.0003 21.4 0.5 3 23 493 513 492 514 0.97 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF382-203 - 549 2.4e-32 108.8 70.4 10 10 3.8e-06 0.0025 18.5 3.8 1 23 519 541 519 542 0.96 C2H2-type zinc finger KRAB PF01352.27 42 ZNF382-203 - 549 4.4e-25 87.0 1.7 1 2 7.2e-28 4.8e-25 86.9 0.4 1 42 6 47 6 47 0.99 KRAB box KRAB PF01352.27 42 ZNF382-203 - 549 4.4e-25 87.0 1.7 2 2 7.6 5e+03 -2.7 0.0 5 12 83 90 82 91 0.85 KRAB box Zn-ribbon_8 PF09723.10 40 ZNF382-203 - 549 6.3e-12 45.4 37.7 1 7 0.024 16 5.7 0.1 25 38 292 306 281 308 0.73 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF382-203 - 549 6.3e-12 45.4 37.7 2 7 0.00016 0.1 12.7 1.5 6 38 295 334 294 336 0.91 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF382-203 - 549 6.3e-12 45.4 37.7 3 7 0.021 14 5.9 0.1 6 16 323 333 322 341 0.86 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF382-203 - 549 6.3e-12 45.4 37.7 4 7 2.9e-05 0.019 15.0 2.1 6 38 351 390 350 391 0.86 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF382-203 - 549 6.3e-12 45.4 37.7 5 7 0.00022 0.14 12.3 3.8 6 34 407 442 406 449 0.90 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF382-203 - 549 6.3e-12 45.4 37.7 6 7 1.4e-06 0.0009 19.3 1.1 6 38 463 502 462 503 0.91 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF382-203 - 549 6.3e-12 45.4 37.7 7 7 0.021 14 5.9 0.5 6 16 519 529 518 545 0.78 Zinc ribbon domain zf-C2H2_6 PF13912.6 27 ZNF382-203 - 549 1.3e-09 37.8 67.5 1 10 0.05 33 4.6 0.2 6 26 215 235 214 236 0.87 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF382-203 - 549 1.3e-09 37.8 67.5 2 10 0.074 49 4.1 0.5 2 20 295 313 295 319 0.76 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF382-203 - 549 1.3e-09 37.8 67.5 3 10 4.4e-05 0.029 14.4 0.5 2 24 323 345 323 347 0.97 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF382-203 - 549 1.3e-09 37.8 67.5 4 10 0.18 1.2e+02 2.9 1.0 2 24 351 373 351 376 0.79 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF382-203 - 549 1.3e-09 37.8 67.5 5 10 0.0043 2.9 8.0 0.3 1 24 378 401 378 404 0.85 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF382-203 - 549 1.3e-09 37.8 67.5 6 10 0.009 6 7.0 0.3 2 11 407 416 407 431 0.79 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF382-203 - 549 1.3e-09 37.8 67.5 7 10 0.0096 6.4 6.9 3.0 2 11 435 444 435 445 0.97 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF382-203 - 549 1.3e-09 37.8 67.5 8 10 0.00057 0.38 10.8 0.4 2 12 463 473 463 474 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF382-203 - 549 1.3e-09 37.8 67.5 9 10 0.00019 0.12 12.4 0.6 4 24 493 513 492 516 0.95 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF382-203 - 549 1.3e-09 37.8 67.5 10 10 0.0081 5.4 7.1 4.5 2 25 519 542 519 543 0.94 C2H2-type zinc finger DUF3268 PF11672.8 118 ZNF382-203 - 549 4.1e-08 33.6 26.1 1 5 3.7e-05 0.024 14.9 0.5 2 41 294 333 293 346 0.73 zinc-finger-containing domain DUF3268 PF11672.8 118 ZNF382-203 - 549 4.1e-08 33.6 26.1 2 5 0.0054 3.6 8.0 0.3 3 41 351 389 349 403 0.81 zinc-finger-containing domain DUF3268 PF11672.8 118 ZNF382-203 - 549 4.1e-08 33.6 26.1 3 5 0.00036 0.24 11.8 1.9 2 39 406 443 405 451 0.89 zinc-finger-containing domain DUF3268 PF11672.8 118 ZNF382-203 - 549 4.1e-08 33.6 26.1 4 5 0.041 27 5.1 0.5 8 41 440 473 439 481 0.87 zinc-finger-containing domain DUF3268 PF11672.8 118 ZNF382-203 - 549 4.1e-08 33.6 26.1 5 5 0.00041 0.27 11.6 1.2 3 45 491 533 489 544 0.77 zinc-finger-containing domain # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF382-203.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF382-203.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF382-203.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF382-203.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF382-203.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:05:06 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZNF382-204 - 549 1.9e-53 176.6 74.5 1 12 1.5 1e+03 0.4 0.0 2 22 198 218 197 221 0.69 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF382-204 - 549 1.9e-53 176.6 74.5 2 12 0.86 5.7e+02 1.2 0.2 4 16 228 240 225 243 0.83 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF382-204 - 549 1.9e-53 176.6 74.5 3 12 0.00018 0.12 12.8 1.2 10 25 290 305 287 306 0.88 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF382-204 - 549 1.9e-53 176.6 74.5 4 12 5.2e-10 3.5e-07 30.4 0.2 2 25 310 333 309 334 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF382-204 - 549 1.9e-53 176.6 74.5 5 12 0.00012 0.077 13.5 0.1 1 25 337 361 337 362 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF382-204 - 549 1.9e-53 176.6 74.5 6 12 1.7e-09 1.1e-06 28.8 2.3 2 25 366 389 365 390 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF382-204 - 549 1.9e-53 176.6 74.5 7 12 6.3e-11 4.2e-08 33.3 0.2 2 24 394 416 393 418 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF382-204 - 549 1.9e-53 176.6 74.5 8 12 2.3e-08 1.5e-05 25.2 0.5 2 24 422 444 421 444 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF382-204 - 549 1.9e-53 176.6 74.5 9 12 1.3e-08 8.3e-06 26.0 0.3 2 25 450 473 449 474 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF382-204 - 549 1.9e-53 176.6 74.5 10 12 2.6e-05 0.018 15.5 0.5 2 25 478 501 478 502 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF382-204 - 549 1.9e-53 176.6 74.5 11 12 2.5e-11 1.7e-08 34.5 3.3 1 25 505 529 505 530 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF382-204 - 549 1.9e-53 176.6 74.5 12 12 0.6 4e+02 1.7 0.2 1 13 533 545 533 546 0.86 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZNF382-204 - 549 3.3e-48 159.5 80.2 1 10 0.057 38 5.0 0.9 5 23 215 233 213 233 0.93 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF382-204 - 549 3.3e-48 159.5 80.2 2 10 4.2e-07 0.00028 21.2 2.6 1 23 295 317 295 317 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF382-204 - 549 3.3e-48 159.5 80.2 3 10 1.6e-07 0.0001 22.5 0.5 1 23 323 345 323 345 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF382-204 - 549 3.3e-48 159.5 80.2 4 10 1.2e-06 0.00077 19.8 2.6 1 23 351 373 351 373 0.93 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF382-204 - 549 3.3e-48 159.5 80.2 5 10 2.5e-07 0.00017 21.9 0.6 1 23 379 401 379 401 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF382-204 - 549 3.3e-48 159.5 80.2 6 10 4.5e-09 3e-06 27.4 0.6 1 23 407 429 407 429 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF382-204 - 549 3.3e-48 159.5 80.2 7 10 8.7e-08 5.8e-05 23.3 2.5 1 23 435 457 435 457 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF382-204 - 549 3.3e-48 159.5 80.2 8 10 1.1e-06 0.00075 19.8 0.9 1 23 463 485 463 485 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF382-204 - 549 3.3e-48 159.5 80.2 9 10 2.6e-09 1.7e-06 28.1 1.1 3 23 493 513 493 513 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF382-204 - 549 3.3e-48 159.5 80.2 10 10 1.9e-06 0.0012 19.1 3.6 1 23 519 541 519 541 0.99 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZNF382-204 - 549 2.4e-32 108.8 70.4 1 10 0.086 57 4.9 0.3 5 23 215 233 214 234 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF382-204 - 549 2.4e-32 108.8 70.4 2 10 3.4e-05 0.022 15.5 1.6 1 23 295 317 295 318 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF382-204 - 549 2.4e-32 108.8 70.4 3 10 2.5e-05 0.017 15.9 0.3 1 23 323 345 323 346 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF382-204 - 549 2.4e-32 108.8 70.4 4 10 1.2e-05 0.0078 17.0 1.6 1 23 351 373 351 374 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF382-204 - 549 2.4e-32 108.8 70.4 5 10 1.6e-05 0.011 16.6 0.5 1 23 379 401 379 402 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF382-204 - 549 2.4e-32 108.8 70.4 6 10 2.8e-05 0.019 15.8 0.4 1 23 407 429 407 430 0.97 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF382-204 - 549 2.4e-32 108.8 70.4 7 10 0.00015 0.1 13.5 1.8 1 23 435 457 435 458 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF382-204 - 549 2.4e-32 108.8 70.4 8 10 0.00029 0.19 12.6 0.7 1 23 463 485 463 486 0.83 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF382-204 - 549 2.4e-32 108.8 70.4 9 10 4.5e-07 0.0003 21.4 0.5 3 23 493 513 492 514 0.97 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF382-204 - 549 2.4e-32 108.8 70.4 10 10 3.8e-06 0.0025 18.5 3.8 1 23 519 541 519 542 0.96 C2H2-type zinc finger KRAB PF01352.27 42 ZNF382-204 - 549 4.4e-25 87.0 1.7 1 2 7.2e-28 4.8e-25 86.9 0.4 1 42 5 46 5 46 0.99 KRAB box KRAB PF01352.27 42 ZNF382-204 - 549 4.4e-25 87.0 1.7 2 2 7.6 5e+03 -2.7 0.0 5 12 83 90 82 91 0.85 KRAB box Zn-ribbon_8 PF09723.10 40 ZNF382-204 - 549 1.8e-11 43.9 40.1 1 8 4.4 2.9e+03 -1.5 0.0 2 23 71 91 71 95 0.85 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF382-204 - 549 1.8e-11 43.9 40.1 2 8 0.024 16 5.7 0.1 25 38 292 306 281 308 0.73 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF382-204 - 549 1.8e-11 43.9 40.1 3 8 0.00016 0.1 12.7 1.5 6 38 295 334 294 336 0.91 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF382-204 - 549 1.8e-11 43.9 40.1 4 8 0.021 14 5.9 0.1 6 16 323 333 322 341 0.86 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF382-204 - 549 1.8e-11 43.9 40.1 5 8 2.9e-05 0.019 15.0 2.1 6 38 351 390 350 391 0.86 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF382-204 - 549 1.8e-11 43.9 40.1 6 8 0.00022 0.14 12.3 3.8 6 34 407 442 406 449 0.90 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF382-204 - 549 1.8e-11 43.9 40.1 7 8 1.4e-06 0.0009 19.3 1.1 6 38 463 502 462 503 0.91 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF382-204 - 549 1.8e-11 43.9 40.1 8 8 0.021 14 5.9 0.5 6 16 519 529 518 545 0.78 Zinc ribbon domain zf-C2H2_6 PF13912.6 27 ZNF382-204 - 549 1.3e-09 37.8 67.5 1 10 0.05 33 4.6 0.2 6 26 215 235 214 236 0.87 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF382-204 - 549 1.3e-09 37.8 67.5 2 10 0.074 49 4.1 0.5 2 20 295 313 295 319 0.76 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF382-204 - 549 1.3e-09 37.8 67.5 3 10 4.4e-05 0.029 14.4 0.5 2 24 323 345 323 347 0.97 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF382-204 - 549 1.3e-09 37.8 67.5 4 10 0.18 1.2e+02 2.9 1.0 2 24 351 373 351 376 0.79 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF382-204 - 549 1.3e-09 37.8 67.5 5 10 0.0043 2.9 8.0 0.3 1 24 378 401 378 404 0.85 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF382-204 - 549 1.3e-09 37.8 67.5 6 10 0.009 6 7.0 0.3 2 11 407 416 407 431 0.79 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF382-204 - 549 1.3e-09 37.8 67.5 7 10 0.0096 6.4 6.9 3.0 2 11 435 444 435 445 0.97 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF382-204 - 549 1.3e-09 37.8 67.5 8 10 0.00057 0.38 10.8 0.4 2 12 463 473 463 474 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF382-204 - 549 1.3e-09 37.8 67.5 9 10 0.00019 0.12 12.4 0.6 4 24 493 513 492 516 0.95 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF382-204 - 549 1.3e-09 37.8 67.5 10 10 0.0081 5.4 7.1 4.5 2 25 519 542 519 543 0.94 C2H2-type zinc finger DUF3268 PF11672.8 118 ZNF382-204 - 549 4.1e-08 33.6 26.1 1 5 3.7e-05 0.024 14.9 0.5 2 41 294 333 293 346 0.73 zinc-finger-containing domain DUF3268 PF11672.8 118 ZNF382-204 - 549 4.1e-08 33.6 26.1 2 5 0.0054 3.6 8.0 0.3 3 41 351 389 349 403 0.81 zinc-finger-containing domain DUF3268 PF11672.8 118 ZNF382-204 - 549 4.1e-08 33.6 26.1 3 5 0.00036 0.24 11.8 1.9 2 39 406 443 405 451 0.89 zinc-finger-containing domain DUF3268 PF11672.8 118 ZNF382-204 - 549 4.1e-08 33.6 26.1 4 5 0.041 27 5.1 0.5 8 41 440 473 439 481 0.87 zinc-finger-containing domain DUF3268 PF11672.8 118 ZNF382-204 - 549 4.1e-08 33.6 26.1 5 5 0.00041 0.27 11.6 1.2 3 45 491 533 489 544 0.77 zinc-finger-containing domain # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF382-204.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF382-204.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF382-204.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF382-204.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF382-204.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:05:07 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF382-205.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF382-205.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF382-205.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF382-205.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF382-205.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:05:07 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF382-206.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF382-206.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF382-206.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF382-206.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF382-206.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:05:07 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF382-207.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF382-207.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF382-207.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF382-207.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF382-207.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:05:08 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF382-208.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF382-208.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF382-208.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF382-208.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF382-208.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:05:08 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF382-209.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF382-209.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF382-209.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF382-209.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF382-209.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:05:08 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF382-210.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF382-210.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF382-210.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF382-210.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF382-210.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:05:09 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZNF383-201 - 475 9.2e-97 313.5 73.5 1 12 1.7e-05 0.012 16.0 0.1 12 25 167 180 157 181 0.81 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF383-201 - 475 9.2e-97 313.5 73.5 2 12 5.5e-08 3.9e-05 23.9 2.3 4 25 187 208 185 209 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF383-201 - 475 9.2e-97 313.5 73.5 3 12 3.8e-11 2.8e-08 33.8 4.2 2 25 213 236 212 237 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF383-201 - 475 9.2e-97 313.5 73.5 4 12 3.9e-12 2.8e-09 37.0 1.3 2 25 241 264 240 265 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF383-201 - 475 9.2e-97 313.5 73.5 5 12 3.6e-12 2.6e-09 37.1 0.3 1 26 268 293 268 293 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF383-201 - 475 9.2e-97 313.5 73.5 6 12 2.1e-11 1.5e-08 34.7 0.5 3 25 298 320 296 321 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF383-201 - 475 9.2e-97 313.5 73.5 7 12 1.8e-12 1.3e-09 38.1 0.5 2 26 325 349 324 349 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF383-201 - 475 9.2e-97 313.5 73.5 8 12 1.6e-11 1.2e-08 35.0 0.3 1 25 352 376 352 377 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF383-201 - 475 9.2e-97 313.5 73.5 9 12 3.8e-10 2.7e-07 30.7 0.1 2 25 381 404 380 405 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF383-201 - 475 9.2e-97 313.5 73.5 10 12 7.8e-10 5.6e-07 29.7 0.6 3 25 410 432 408 433 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF383-201 - 475 9.2e-97 313.5 73.5 11 12 2e-13 1.4e-10 41.1 0.6 1 26 436 461 436 461 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF383-201 - 475 9.2e-97 313.5 73.5 12 12 0.38 2.7e+02 2.2 0.1 1 12 464 475 464 475 0.87 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZNF383-201 - 475 1.8e-65 213.9 77.5 1 12 4.1 3e+03 -1.0 0.0 9 20 150 161 149 163 0.87 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF383-201 - 475 1.8e-65 213.9 77.5 2 12 9.8e-09 7e-06 26.2 0.9 1 23 170 192 170 192 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF383-201 - 475 1.8e-65 213.9 77.5 3 12 0.00054 0.39 11.3 4.3 1 23 198 220 198 220 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF383-201 - 475 1.8e-65 213.9 77.5 4 12 3.8e-06 0.0027 18.1 2.3 1 23 226 248 226 248 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF383-201 - 475 1.8e-65 213.9 77.5 5 12 1e-08 7.3e-06 26.2 1.2 1 23 254 276 254 276 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF383-201 - 475 1.8e-65 213.9 77.5 6 12 2.2e-08 1.6e-05 25.1 0.5 1 23 282 304 282 304 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF383-201 - 475 1.8e-65 213.9 77.5 7 12 3.4e-09 2.4e-06 27.7 0.4 1 23 310 332 310 332 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF383-201 - 475 1.8e-65 213.9 77.5 8 12 2.8e-08 2e-05 24.8 0.2 1 23 338 360 338 360 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF383-201 - 475 1.8e-65 213.9 77.5 9 12 2.2e-09 1.6e-06 28.3 0.7 1 23 366 388 366 388 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF383-201 - 475 1.8e-65 213.9 77.5 10 12 2e-08 1.4e-05 25.2 0.4 1 23 394 416 394 416 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF383-201 - 475 1.8e-65 213.9 77.5 11 12 3e-09 2.2e-06 27.8 1.9 1 23 422 444 422 444 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF383-201 - 475 1.8e-65 213.9 77.5 12 12 3.6e-07 0.00026 21.3 0.1 1 23 450 472 450 472 0.95 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZNF383-201 - 475 1.3e-39 131.4 76.6 1 11 2.1e-05 0.015 16.1 0.5 1 23 170 192 170 193 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF383-201 - 475 1.3e-39 131.4 76.6 2 11 0.00017 0.12 13.2 4.0 1 23 198 220 198 221 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF383-201 - 475 1.3e-39 131.4 76.6 3 11 7.9e-06 0.0057 17.4 2.7 1 23 226 248 226 249 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF383-201 - 475 1.3e-39 131.4 76.6 4 11 1.2e-05 0.0086 16.8 1.2 1 23 254 276 254 277 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF383-201 - 475 1.3e-39 131.4 76.6 5 11 1.1e-05 0.0081 16.9 0.6 1 23 282 304 282 305 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF383-201 - 475 1.3e-39 131.4 76.6 6 11 1.4e-05 0.01 16.6 0.6 1 23 310 332 310 333 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF383-201 - 475 1.3e-39 131.4 76.6 7 11 3.7e-06 0.0027 18.4 0.2 1 23 338 360 338 361 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF383-201 - 475 1.3e-39 131.4 76.6 8 11 1.4e-05 0.01 16.6 0.4 3 23 368 388 366 389 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF383-201 - 475 1.3e-39 131.4 76.6 9 11 6.4e-05 0.046 14.6 0.5 1 23 394 416 394 417 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF383-201 - 475 1.3e-39 131.4 76.6 10 11 9.1e-06 0.0065 17.2 1.4 1 23 422 444 422 445 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF383-201 - 475 1.3e-39 131.4 76.6 11 11 2.4e-05 0.017 15.9 0.1 1 23 450 472 450 473 0.91 C2H2-type zinc finger KRAB PF01352.27 42 ZNF383-201 - 475 6.6e-25 86.5 0.4 1 1 1.7e-27 1.2e-24 85.6 0.4 1 42 5 46 5 46 0.99 KRAB box zf-C2H2_6 PF13912.6 27 ZNF383-201 - 475 1.9e-23 81.9 77.7 1 11 0.0049 3.5 7.7 1.1 2 12 170 180 170 181 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF383-201 - 475 1.9e-23 81.9 77.7 2 11 0.01 7.5 6.7 2.6 2 12 198 208 197 218 0.92 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF383-201 - 475 1.9e-23 81.9 77.7 3 11 0.0016 1.2 9.2 1.4 2 12 226 236 226 236 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF383-201 - 475 1.9e-23 81.9 77.7 4 11 1.2e-05 0.0089 16.0 1.4 2 24 254 276 254 279 0.90 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF383-201 - 475 1.9e-23 81.9 77.7 5 11 0.0004 0.29 11.2 0.8 2 13 282 293 282 304 0.82 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF383-201 - 475 1.9e-23 81.9 77.7 6 11 0.001 0.72 9.9 0.8 2 11 310 319 310 321 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF383-201 - 475 1.9e-23 81.9 77.7 7 11 6.6e-08 4.7e-05 23.3 0.6 2 24 338 360 338 363 0.92 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF383-201 - 475 1.9e-23 81.9 77.7 8 11 0.0048 3.4 7.8 0.4 2 12 366 376 366 389 0.76 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF383-201 - 475 1.9e-23 81.9 77.7 9 11 0.033 24 5.1 0.4 2 12 394 404 394 417 0.88 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF383-201 - 475 1.9e-23 81.9 77.7 10 11 1.3e-05 0.0091 16.0 1.5 2 24 422 444 422 447 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF383-201 - 475 1.9e-23 81.9 77.7 11 11 2e-06 0.0014 18.6 0.4 2 20 450 468 450 472 0.94 C2H2-type zinc finger zf-C2H2_11 PF16622.5 29 ZNF383-201 - 475 6.1e-13 48.3 53.9 1 11 0.28 2e+02 1.8 0.2 6 15 171 180 169 191 0.80 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF383-201 - 475 6.1e-13 48.3 53.9 2 11 0.014 9.8 6.0 1.6 4 26 197 219 195 220 0.89 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF383-201 - 475 6.1e-13 48.3 53.9 3 11 0.0019 1.3 8.8 1.8 6 26 227 247 224 248 0.93 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF383-201 - 475 6.1e-13 48.3 53.9 4 11 0.23 1.7e+02 2.1 0.3 6 15 255 264 253 275 0.79 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF383-201 - 475 6.1e-13 48.3 53.9 5 11 0.053 38 4.2 0.2 7 26 284 303 280 304 0.88 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF383-201 - 475 6.1e-13 48.3 53.9 6 11 0.0056 4 7.3 0.1 6 26 311 331 308 332 0.91 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF383-201 - 475 6.1e-13 48.3 53.9 7 11 0.00025 0.18 11.6 0.1 6 26 339 359 336 360 0.93 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF383-201 - 475 6.1e-13 48.3 53.9 8 11 0.0007 0.5 10.2 0.2 7 26 368 387 365 388 0.94 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF383-201 - 475 6.1e-13 48.3 53.9 9 11 0.0022 1.5 8.6 0.2 6 26 395 415 392 416 0.89 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF383-201 - 475 6.1e-13 48.3 53.9 10 11 0.0014 1 9.2 0.1 5 26 422 443 418 444 0.90 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF383-201 - 475 6.1e-13 48.3 53.9 11 11 0.00062 0.45 10.3 0.1 6 24 451 469 448 472 0.89 zinc-finger C2H2-type zf-C2H2_jaz PF12171.8 27 ZNF383-201 - 475 7.4e-13 48.4 55.7 1 11 0.022 16 5.9 0.9 2 22 170 190 169 190 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF383-201 - 475 7.4e-13 48.4 55.7 2 11 0.095 68 3.9 1.1 2 12 198 208 197 218 0.87 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF383-201 - 475 7.4e-13 48.4 55.7 3 11 0.015 11 6.5 1.0 2 21 226 245 225 246 0.86 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF383-201 - 475 7.4e-13 48.4 55.7 4 11 0.18 1.3e+02 3.0 1.1 2 12 254 264 253 273 0.91 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF383-201 - 475 7.4e-13 48.4 55.7 5 11 0.004 2.9 8.3 0.3 2 20 282 300 281 300 0.87 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF383-201 - 475 7.4e-13 48.4 55.7 6 11 0.0044 3.2 8.2 0.2 2 22 310 330 309 330 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF383-201 - 475 7.4e-13 48.4 55.7 7 11 3e-05 0.022 15.1 0.0 2 22 338 358 337 358 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF383-201 - 475 7.4e-13 48.4 55.7 8 11 0.00071 0.51 10.7 0.1 2 22 366 386 365 386 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF383-201 - 475 7.4e-13 48.4 55.7 9 11 0.037 27 5.2 0.3 2 21 394 413 393 414 0.84 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF383-201 - 475 7.4e-13 48.4 55.7 10 11 0.019 14 6.1 0.5 2 22 422 442 421 442 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF383-201 - 475 7.4e-13 48.4 55.7 11 11 0.0012 0.84 10.0 0.0 2 20 450 468 449 469 0.92 Zinc-finger double-stranded RNA-binding Zn-ribbon_8 PF09723.10 40 ZNF383-201 - 475 7.9e-12 45.1 68.3 1 11 0.00028 0.2 11.8 5.7 6 34 170 205 169 206 0.90 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF383-201 - 475 7.9e-12 45.1 68.3 2 11 0.025 18 5.6 9.3 6 34 198 233 197 236 0.82 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF383-201 - 475 7.9e-12 45.1 68.3 3 11 0.00044 0.32 11.2 7.2 6 34 226 261 224 265 0.93 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF383-201 - 475 7.9e-12 45.1 68.3 4 11 6.3e-05 0.045 13.9 5.4 6 38 254 293 253 294 0.92 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF383-201 - 475 7.9e-12 45.1 68.3 5 11 7.9e-05 0.056 13.6 3.7 6 36 282 319 281 326 0.82 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF383-201 - 475 7.9e-12 45.1 68.3 6 11 2.3e-05 0.017 15.2 5.6 6 34 310 345 309 348 0.92 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF383-201 - 475 7.9e-12 45.1 68.3 7 11 1.2e-05 0.0086 16.2 3.9 6 36 338 375 337 378 0.91 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF383-201 - 475 7.9e-12 45.1 68.3 8 11 0.00068 0.49 10.6 3.8 6 34 366 401 365 404 0.89 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF383-201 - 475 7.9e-12 45.1 68.3 9 11 0.00014 0.1 12.8 6.2 6 37 394 432 393 434 0.86 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF383-201 - 475 7.9e-12 45.1 68.3 10 11 0.00042 0.3 11.2 6.4 6 34 422 457 420 461 0.86 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF383-201 - 475 7.9e-12 45.1 68.3 11 11 0.023 16 5.7 0.4 6 16 450 460 449 469 0.87 Zinc ribbon domain XPA_N PF01286.18 32 ZNF383-201 - 475 1.6e-09 37.6 63.8 1 11 0.024 18 5.5 0.3 3 12 171 180 169 185 0.89 XPA protein N-terminal XPA_N PF01286.18 32 ZNF383-201 - 475 1.6e-09 37.6 63.8 2 11 0.86 6.1e+02 0.6 3.3 3 11 199 207 198 209 0.87 XPA protein N-terminal XPA_N PF01286.18 32 ZNF383-201 - 475 1.6e-09 37.6 63.8 3 11 0.0013 0.96 9.6 1.9 3 18 227 243 225 245 0.76 XPA protein N-terminal XPA_N PF01286.18 32 ZNF383-201 - 475 1.6e-09 37.6 63.8 4 11 0.018 13 5.9 0.8 3 11 255 263 253 269 0.90 XPA protein N-terminal XPA_N PF01286.18 32 ZNF383-201 - 475 1.6e-09 37.6 63.8 5 11 0.022 16 5.7 0.1 3 14 283 294 281 300 0.76 XPA protein N-terminal XPA_N PF01286.18 32 ZNF383-201 - 475 1.6e-09 37.6 63.8 6 11 0.00085 0.61 10.2 0.2 3 14 311 322 309 328 0.86 XPA protein N-terminal XPA_N PF01286.18 32 ZNF383-201 - 475 1.6e-09 37.6 63.8 7 11 0.0072 5.1 7.2 0.1 3 12 339 348 337 356 0.86 XPA protein N-terminal XPA_N PF01286.18 32 ZNF383-201 - 475 1.6e-09 37.6 63.8 8 11 0.0011 0.77 9.9 0.2 3 14 367 378 365 384 0.85 XPA protein N-terminal XPA_N PF01286.18 32 ZNF383-201 - 475 1.6e-09 37.6 63.8 9 11 0.0011 0.76 9.9 0.3 3 19 395 412 393 413 0.82 XPA protein N-terminal XPA_N PF01286.18 32 ZNF383-201 - 475 1.6e-09 37.6 63.8 10 11 0.046 33 4.6 1.5 3 12 423 432 421 435 0.89 XPA protein N-terminal XPA_N PF01286.18 32 ZNF383-201 - 475 1.6e-09 37.6 63.8 11 11 0.0074 5.3 7.2 0.1 3 12 451 460 449 462 0.89 XPA protein N-terminal zf_UBZ PF18439.1 32 ZNF383-201 - 475 5.3e-09 35.5 54.1 1 11 0.00098 0.7 9.5 0.2 3 21 170 189 168 189 0.92 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF383-201 - 475 5.3e-09 35.5 54.1 2 11 0.0091 6.5 6.4 0.8 2 14 197 209 196 216 0.87 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF383-201 - 475 5.3e-09 35.5 54.1 3 11 0.009 6.4 6.5 1.0 3 18 226 242 224 245 0.78 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF383-201 - 475 5.3e-09 35.5 54.1 4 11 0.03 21 4.8 0.3 3 13 254 264 252 265 0.87 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF383-201 - 475 5.3e-09 35.5 54.1 5 11 0.18 1.3e+02 2.3 0.1 3 17 282 297 280 301 0.79 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF383-201 - 475 5.3e-09 35.5 54.1 6 11 0.0031 2.2 7.9 0.3 3 21 310 329 308 329 0.86 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF383-201 - 475 5.3e-09 35.5 54.1 7 11 0.0036 2.6 7.7 0.1 3 20 338 356 336 357 0.82 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF383-201 - 475 5.3e-09 35.5 54.1 8 11 0.0011 0.77 9.4 0.3 3 21 366 385 364 385 0.92 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF383-201 - 475 5.3e-09 35.5 54.1 9 11 0.035 25 4.6 0.2 3 20 394 412 392 413 0.81 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF383-201 - 475 5.3e-09 35.5 54.1 10 11 0.1 75 3.1 0.6 3 12 422 431 420 440 0.88 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF383-201 - 475 5.3e-09 35.5 54.1 11 11 0.0047 3.3 7.4 0.1 3 20 450 468 448 469 0.79 Ubiquitin-Binding Zinc Finger # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF383-201.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF383-201.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF383-201.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF383-201.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF383-201.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:05:09 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF383-202.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF383-202.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF383-202.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF383-202.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF383-202.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:05:10 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF383-203.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF383-203.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF383-203.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF383-203.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF383-203.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:05:10 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF383-204.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF383-204.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF383-204.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF383-204.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF383-204.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:05:10 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- KRAB PF01352.27 42 ZNF383-205 - 81 5.4e-26 90.0 0.4 1 2 3e-30 5.4e-26 90.0 0.4 1 42 5 46 5 46 0.99 KRAB box KRAB PF01352.27 42 ZNF383-205 - 81 5.4e-26 90.0 0.4 2 2 0.41 7.3e+03 -3.3 0.0 8 12 65 69 65 71 0.78 KRAB box # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF383-205.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF383-205.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF383-205.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF383-205.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF383-205.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:05:11 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF383-206.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF383-206.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF383-206.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF383-206.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF383-206.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:05:11 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZNF383-207 - 475 9.2e-97 313.5 73.5 1 12 1.7e-05 0.012 16.0 0.1 12 25 167 180 157 181 0.81 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF383-207 - 475 9.2e-97 313.5 73.5 2 12 5.5e-08 3.9e-05 23.9 2.3 4 25 187 208 185 209 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF383-207 - 475 9.2e-97 313.5 73.5 3 12 3.8e-11 2.8e-08 33.8 4.2 2 25 213 236 212 237 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF383-207 - 475 9.2e-97 313.5 73.5 4 12 3.9e-12 2.8e-09 37.0 1.3 2 25 241 264 240 265 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF383-207 - 475 9.2e-97 313.5 73.5 5 12 3.6e-12 2.6e-09 37.1 0.3 1 26 268 293 268 293 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF383-207 - 475 9.2e-97 313.5 73.5 6 12 2.1e-11 1.5e-08 34.7 0.5 3 25 298 320 296 321 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF383-207 - 475 9.2e-97 313.5 73.5 7 12 1.8e-12 1.3e-09 38.1 0.5 2 26 325 349 324 349 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF383-207 - 475 9.2e-97 313.5 73.5 8 12 1.6e-11 1.2e-08 35.0 0.3 1 25 352 376 352 377 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF383-207 - 475 9.2e-97 313.5 73.5 9 12 3.8e-10 2.7e-07 30.7 0.1 2 25 381 404 380 405 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF383-207 - 475 9.2e-97 313.5 73.5 10 12 7.8e-10 5.6e-07 29.7 0.6 3 25 410 432 408 433 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF383-207 - 475 9.2e-97 313.5 73.5 11 12 2e-13 1.4e-10 41.1 0.6 1 26 436 461 436 461 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF383-207 - 475 9.2e-97 313.5 73.5 12 12 0.38 2.7e+02 2.2 0.1 1 12 464 475 464 475 0.87 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZNF383-207 - 475 1.8e-65 213.9 77.5 1 12 4.1 3e+03 -1.0 0.0 9 20 150 161 149 163 0.87 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF383-207 - 475 1.8e-65 213.9 77.5 2 12 9.8e-09 7e-06 26.2 0.9 1 23 170 192 170 192 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF383-207 - 475 1.8e-65 213.9 77.5 3 12 0.00054 0.39 11.3 4.3 1 23 198 220 198 220 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF383-207 - 475 1.8e-65 213.9 77.5 4 12 3.8e-06 0.0027 18.1 2.3 1 23 226 248 226 248 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF383-207 - 475 1.8e-65 213.9 77.5 5 12 1e-08 7.3e-06 26.2 1.2 1 23 254 276 254 276 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF383-207 - 475 1.8e-65 213.9 77.5 6 12 2.2e-08 1.6e-05 25.1 0.5 1 23 282 304 282 304 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF383-207 - 475 1.8e-65 213.9 77.5 7 12 3.4e-09 2.4e-06 27.7 0.4 1 23 310 332 310 332 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF383-207 - 475 1.8e-65 213.9 77.5 8 12 2.8e-08 2e-05 24.8 0.2 1 23 338 360 338 360 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF383-207 - 475 1.8e-65 213.9 77.5 9 12 2.2e-09 1.6e-06 28.3 0.7 1 23 366 388 366 388 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF383-207 - 475 1.8e-65 213.9 77.5 10 12 2e-08 1.4e-05 25.2 0.4 1 23 394 416 394 416 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF383-207 - 475 1.8e-65 213.9 77.5 11 12 3e-09 2.2e-06 27.8 1.9 1 23 422 444 422 444 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF383-207 - 475 1.8e-65 213.9 77.5 12 12 3.6e-07 0.00026 21.3 0.1 1 23 450 472 450 472 0.95 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZNF383-207 - 475 1.3e-39 131.4 76.6 1 11 2.1e-05 0.015 16.1 0.5 1 23 170 192 170 193 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF383-207 - 475 1.3e-39 131.4 76.6 2 11 0.00017 0.12 13.2 4.0 1 23 198 220 198 221 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF383-207 - 475 1.3e-39 131.4 76.6 3 11 7.9e-06 0.0057 17.4 2.7 1 23 226 248 226 249 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF383-207 - 475 1.3e-39 131.4 76.6 4 11 1.2e-05 0.0086 16.8 1.2 1 23 254 276 254 277 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF383-207 - 475 1.3e-39 131.4 76.6 5 11 1.1e-05 0.0081 16.9 0.6 1 23 282 304 282 305 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF383-207 - 475 1.3e-39 131.4 76.6 6 11 1.4e-05 0.01 16.6 0.6 1 23 310 332 310 333 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF383-207 - 475 1.3e-39 131.4 76.6 7 11 3.7e-06 0.0027 18.4 0.2 1 23 338 360 338 361 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF383-207 - 475 1.3e-39 131.4 76.6 8 11 1.4e-05 0.01 16.6 0.4 3 23 368 388 366 389 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF383-207 - 475 1.3e-39 131.4 76.6 9 11 6.4e-05 0.046 14.6 0.5 1 23 394 416 394 417 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF383-207 - 475 1.3e-39 131.4 76.6 10 11 9.1e-06 0.0065 17.2 1.4 1 23 422 444 422 445 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF383-207 - 475 1.3e-39 131.4 76.6 11 11 2.4e-05 0.017 15.9 0.1 1 23 450 472 450 473 0.91 C2H2-type zinc finger KRAB PF01352.27 42 ZNF383-207 - 475 6.6e-25 86.5 0.4 1 1 1.7e-27 1.2e-24 85.6 0.4 1 42 5 46 5 46 0.99 KRAB box zf-C2H2_6 PF13912.6 27 ZNF383-207 - 475 1.9e-23 81.9 77.7 1 11 0.0049 3.5 7.7 1.1 2 12 170 180 170 181 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF383-207 - 475 1.9e-23 81.9 77.7 2 11 0.01 7.5 6.7 2.6 2 12 198 208 197 218 0.92 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF383-207 - 475 1.9e-23 81.9 77.7 3 11 0.0016 1.2 9.2 1.4 2 12 226 236 226 236 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF383-207 - 475 1.9e-23 81.9 77.7 4 11 1.2e-05 0.0089 16.0 1.4 2 24 254 276 254 279 0.90 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF383-207 - 475 1.9e-23 81.9 77.7 5 11 0.0004 0.29 11.2 0.8 2 13 282 293 282 304 0.82 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF383-207 - 475 1.9e-23 81.9 77.7 6 11 0.001 0.72 9.9 0.8 2 11 310 319 310 321 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF383-207 - 475 1.9e-23 81.9 77.7 7 11 6.6e-08 4.7e-05 23.3 0.6 2 24 338 360 338 363 0.92 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF383-207 - 475 1.9e-23 81.9 77.7 8 11 0.0048 3.4 7.8 0.4 2 12 366 376 366 389 0.76 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF383-207 - 475 1.9e-23 81.9 77.7 9 11 0.033 24 5.1 0.4 2 12 394 404 394 417 0.88 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF383-207 - 475 1.9e-23 81.9 77.7 10 11 1.3e-05 0.0091 16.0 1.5 2 24 422 444 422 447 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF383-207 - 475 1.9e-23 81.9 77.7 11 11 2e-06 0.0014 18.6 0.4 2 20 450 468 450 472 0.94 C2H2-type zinc finger zf-C2H2_11 PF16622.5 29 ZNF383-207 - 475 6.1e-13 48.3 53.9 1 11 0.28 2e+02 1.8 0.2 6 15 171 180 169 191 0.80 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF383-207 - 475 6.1e-13 48.3 53.9 2 11 0.014 9.8 6.0 1.6 4 26 197 219 195 220 0.89 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF383-207 - 475 6.1e-13 48.3 53.9 3 11 0.0019 1.3 8.8 1.8 6 26 227 247 224 248 0.93 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF383-207 - 475 6.1e-13 48.3 53.9 4 11 0.23 1.7e+02 2.1 0.3 6 15 255 264 253 275 0.79 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF383-207 - 475 6.1e-13 48.3 53.9 5 11 0.053 38 4.2 0.2 7 26 284 303 280 304 0.88 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF383-207 - 475 6.1e-13 48.3 53.9 6 11 0.0056 4 7.3 0.1 6 26 311 331 308 332 0.91 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF383-207 - 475 6.1e-13 48.3 53.9 7 11 0.00025 0.18 11.6 0.1 6 26 339 359 336 360 0.93 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF383-207 - 475 6.1e-13 48.3 53.9 8 11 0.0007 0.5 10.2 0.2 7 26 368 387 365 388 0.94 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF383-207 - 475 6.1e-13 48.3 53.9 9 11 0.0022 1.5 8.6 0.2 6 26 395 415 392 416 0.89 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF383-207 - 475 6.1e-13 48.3 53.9 10 11 0.0014 1 9.2 0.1 5 26 422 443 418 444 0.90 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF383-207 - 475 6.1e-13 48.3 53.9 11 11 0.00062 0.45 10.3 0.1 6 24 451 469 448 472 0.89 zinc-finger C2H2-type zf-C2H2_jaz PF12171.8 27 ZNF383-207 - 475 7.4e-13 48.4 55.7 1 11 0.022 16 5.9 0.9 2 22 170 190 169 190 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF383-207 - 475 7.4e-13 48.4 55.7 2 11 0.095 68 3.9 1.1 2 12 198 208 197 218 0.87 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF383-207 - 475 7.4e-13 48.4 55.7 3 11 0.015 11 6.5 1.0 2 21 226 245 225 246 0.86 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF383-207 - 475 7.4e-13 48.4 55.7 4 11 0.18 1.3e+02 3.0 1.1 2 12 254 264 253 273 0.91 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF383-207 - 475 7.4e-13 48.4 55.7 5 11 0.004 2.9 8.3 0.3 2 20 282 300 281 300 0.87 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF383-207 - 475 7.4e-13 48.4 55.7 6 11 0.0044 3.2 8.2 0.2 2 22 310 330 309 330 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF383-207 - 475 7.4e-13 48.4 55.7 7 11 3e-05 0.022 15.1 0.0 2 22 338 358 337 358 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF383-207 - 475 7.4e-13 48.4 55.7 8 11 0.00071 0.51 10.7 0.1 2 22 366 386 365 386 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF383-207 - 475 7.4e-13 48.4 55.7 9 11 0.037 27 5.2 0.3 2 21 394 413 393 414 0.84 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF383-207 - 475 7.4e-13 48.4 55.7 10 11 0.019 14 6.1 0.5 2 22 422 442 421 442 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF383-207 - 475 7.4e-13 48.4 55.7 11 11 0.0012 0.84 10.0 0.0 2 20 450 468 449 469 0.92 Zinc-finger double-stranded RNA-binding Zn-ribbon_8 PF09723.10 40 ZNF383-207 - 475 7.9e-12 45.1 68.3 1 11 0.00028 0.2 11.8 5.7 6 34 170 205 169 206 0.90 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF383-207 - 475 7.9e-12 45.1 68.3 2 11 0.025 18 5.6 9.3 6 34 198 233 197 236 0.82 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF383-207 - 475 7.9e-12 45.1 68.3 3 11 0.00044 0.32 11.2 7.2 6 34 226 261 224 265 0.93 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF383-207 - 475 7.9e-12 45.1 68.3 4 11 6.3e-05 0.045 13.9 5.4 6 38 254 293 253 294 0.92 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF383-207 - 475 7.9e-12 45.1 68.3 5 11 7.9e-05 0.056 13.6 3.7 6 36 282 319 281 326 0.82 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF383-207 - 475 7.9e-12 45.1 68.3 6 11 2.3e-05 0.017 15.2 5.6 6 34 310 345 309 348 0.92 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF383-207 - 475 7.9e-12 45.1 68.3 7 11 1.2e-05 0.0086 16.2 3.9 6 36 338 375 337 378 0.91 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF383-207 - 475 7.9e-12 45.1 68.3 8 11 0.00068 0.49 10.6 3.8 6 34 366 401 365 404 0.89 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF383-207 - 475 7.9e-12 45.1 68.3 9 11 0.00014 0.1 12.8 6.2 6 37 394 432 393 434 0.86 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF383-207 - 475 7.9e-12 45.1 68.3 10 11 0.00042 0.3 11.2 6.4 6 34 422 457 420 461 0.86 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF383-207 - 475 7.9e-12 45.1 68.3 11 11 0.023 16 5.7 0.4 6 16 450 460 449 469 0.87 Zinc ribbon domain XPA_N PF01286.18 32 ZNF383-207 - 475 1.6e-09 37.6 63.8 1 11 0.024 18 5.5 0.3 3 12 171 180 169 185 0.89 XPA protein N-terminal XPA_N PF01286.18 32 ZNF383-207 - 475 1.6e-09 37.6 63.8 2 11 0.86 6.1e+02 0.6 3.3 3 11 199 207 198 209 0.87 XPA protein N-terminal XPA_N PF01286.18 32 ZNF383-207 - 475 1.6e-09 37.6 63.8 3 11 0.0013 0.96 9.6 1.9 3 18 227 243 225 245 0.76 XPA protein N-terminal XPA_N PF01286.18 32 ZNF383-207 - 475 1.6e-09 37.6 63.8 4 11 0.018 13 5.9 0.8 3 11 255 263 253 269 0.90 XPA protein N-terminal XPA_N PF01286.18 32 ZNF383-207 - 475 1.6e-09 37.6 63.8 5 11 0.022 16 5.7 0.1 3 14 283 294 281 300 0.76 XPA protein N-terminal XPA_N PF01286.18 32 ZNF383-207 - 475 1.6e-09 37.6 63.8 6 11 0.00085 0.61 10.2 0.2 3 14 311 322 309 328 0.86 XPA protein N-terminal XPA_N PF01286.18 32 ZNF383-207 - 475 1.6e-09 37.6 63.8 7 11 0.0072 5.1 7.2 0.1 3 12 339 348 337 356 0.86 XPA protein N-terminal XPA_N PF01286.18 32 ZNF383-207 - 475 1.6e-09 37.6 63.8 8 11 0.0011 0.77 9.9 0.2 3 14 367 378 365 384 0.85 XPA protein N-terminal XPA_N PF01286.18 32 ZNF383-207 - 475 1.6e-09 37.6 63.8 9 11 0.0011 0.76 9.9 0.3 3 19 395 412 393 413 0.82 XPA protein N-terminal XPA_N PF01286.18 32 ZNF383-207 - 475 1.6e-09 37.6 63.8 10 11 0.046 33 4.6 1.5 3 12 423 432 421 435 0.89 XPA protein N-terminal XPA_N PF01286.18 32 ZNF383-207 - 475 1.6e-09 37.6 63.8 11 11 0.0074 5.3 7.2 0.1 3 12 451 460 449 462 0.89 XPA protein N-terminal zf_UBZ PF18439.1 32 ZNF383-207 - 475 5.3e-09 35.5 54.1 1 11 0.00098 0.7 9.5 0.2 3 21 170 189 168 189 0.92 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF383-207 - 475 5.3e-09 35.5 54.1 2 11 0.0091 6.5 6.4 0.8 2 14 197 209 196 216 0.87 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF383-207 - 475 5.3e-09 35.5 54.1 3 11 0.009 6.4 6.5 1.0 3 18 226 242 224 245 0.78 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF383-207 - 475 5.3e-09 35.5 54.1 4 11 0.03 21 4.8 0.3 3 13 254 264 252 265 0.87 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF383-207 - 475 5.3e-09 35.5 54.1 5 11 0.18 1.3e+02 2.3 0.1 3 17 282 297 280 301 0.79 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF383-207 - 475 5.3e-09 35.5 54.1 6 11 0.0031 2.2 7.9 0.3 3 21 310 329 308 329 0.86 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF383-207 - 475 5.3e-09 35.5 54.1 7 11 0.0036 2.6 7.7 0.1 3 20 338 356 336 357 0.82 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF383-207 - 475 5.3e-09 35.5 54.1 8 11 0.0011 0.77 9.4 0.3 3 21 366 385 364 385 0.92 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF383-207 - 475 5.3e-09 35.5 54.1 9 11 0.035 25 4.6 0.2 3 20 394 412 392 413 0.81 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF383-207 - 475 5.3e-09 35.5 54.1 10 11 0.1 75 3.1 0.6 3 12 422 431 420 440 0.88 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF383-207 - 475 5.3e-09 35.5 54.1 11 11 0.0047 3.3 7.4 0.1 3 20 450 468 448 469 0.79 Ubiquitin-Binding Zinc Finger # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF383-207.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF383-207.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF383-207.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF383-207.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF383-207.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:05:12 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZNF383-208 - 475 9.2e-97 313.5 73.5 1 12 1.7e-05 0.012 16.0 0.1 12 25 167 180 157 181 0.81 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF383-208 - 475 9.2e-97 313.5 73.5 2 12 5.5e-08 3.9e-05 23.9 2.3 4 25 187 208 185 209 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF383-208 - 475 9.2e-97 313.5 73.5 3 12 3.8e-11 2.8e-08 33.8 4.2 2 25 213 236 212 237 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF383-208 - 475 9.2e-97 313.5 73.5 4 12 3.9e-12 2.8e-09 37.0 1.3 2 25 241 264 240 265 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF383-208 - 475 9.2e-97 313.5 73.5 5 12 3.6e-12 2.6e-09 37.1 0.3 1 26 268 293 268 293 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF383-208 - 475 9.2e-97 313.5 73.5 6 12 2.1e-11 1.5e-08 34.7 0.5 3 25 298 320 296 321 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF383-208 - 475 9.2e-97 313.5 73.5 7 12 1.8e-12 1.3e-09 38.1 0.5 2 26 325 349 324 349 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF383-208 - 475 9.2e-97 313.5 73.5 8 12 1.6e-11 1.2e-08 35.0 0.3 1 25 352 376 352 377 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF383-208 - 475 9.2e-97 313.5 73.5 9 12 3.8e-10 2.7e-07 30.7 0.1 2 25 381 404 380 405 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF383-208 - 475 9.2e-97 313.5 73.5 10 12 7.8e-10 5.6e-07 29.7 0.6 3 25 410 432 408 433 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF383-208 - 475 9.2e-97 313.5 73.5 11 12 2e-13 1.4e-10 41.1 0.6 1 26 436 461 436 461 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF383-208 - 475 9.2e-97 313.5 73.5 12 12 0.38 2.7e+02 2.2 0.1 1 12 464 475 464 475 0.87 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZNF383-208 - 475 1.8e-65 213.9 77.5 1 12 4.1 3e+03 -1.0 0.0 9 20 150 161 149 163 0.87 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF383-208 - 475 1.8e-65 213.9 77.5 2 12 9.8e-09 7e-06 26.2 0.9 1 23 170 192 170 192 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF383-208 - 475 1.8e-65 213.9 77.5 3 12 0.00054 0.39 11.3 4.3 1 23 198 220 198 220 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF383-208 - 475 1.8e-65 213.9 77.5 4 12 3.8e-06 0.0027 18.1 2.3 1 23 226 248 226 248 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF383-208 - 475 1.8e-65 213.9 77.5 5 12 1e-08 7.3e-06 26.2 1.2 1 23 254 276 254 276 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF383-208 - 475 1.8e-65 213.9 77.5 6 12 2.2e-08 1.6e-05 25.1 0.5 1 23 282 304 282 304 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF383-208 - 475 1.8e-65 213.9 77.5 7 12 3.4e-09 2.4e-06 27.7 0.4 1 23 310 332 310 332 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF383-208 - 475 1.8e-65 213.9 77.5 8 12 2.8e-08 2e-05 24.8 0.2 1 23 338 360 338 360 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF383-208 - 475 1.8e-65 213.9 77.5 9 12 2.2e-09 1.6e-06 28.3 0.7 1 23 366 388 366 388 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF383-208 - 475 1.8e-65 213.9 77.5 10 12 2e-08 1.4e-05 25.2 0.4 1 23 394 416 394 416 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF383-208 - 475 1.8e-65 213.9 77.5 11 12 3e-09 2.2e-06 27.8 1.9 1 23 422 444 422 444 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF383-208 - 475 1.8e-65 213.9 77.5 12 12 3.6e-07 0.00026 21.3 0.1 1 23 450 472 450 472 0.95 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZNF383-208 - 475 1.3e-39 131.4 76.6 1 11 2.1e-05 0.015 16.1 0.5 1 23 170 192 170 193 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF383-208 - 475 1.3e-39 131.4 76.6 2 11 0.00017 0.12 13.2 4.0 1 23 198 220 198 221 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF383-208 - 475 1.3e-39 131.4 76.6 3 11 7.9e-06 0.0057 17.4 2.7 1 23 226 248 226 249 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF383-208 - 475 1.3e-39 131.4 76.6 4 11 1.2e-05 0.0086 16.8 1.2 1 23 254 276 254 277 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF383-208 - 475 1.3e-39 131.4 76.6 5 11 1.1e-05 0.0081 16.9 0.6 1 23 282 304 282 305 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF383-208 - 475 1.3e-39 131.4 76.6 6 11 1.4e-05 0.01 16.6 0.6 1 23 310 332 310 333 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF383-208 - 475 1.3e-39 131.4 76.6 7 11 3.7e-06 0.0027 18.4 0.2 1 23 338 360 338 361 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF383-208 - 475 1.3e-39 131.4 76.6 8 11 1.4e-05 0.01 16.6 0.4 3 23 368 388 366 389 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF383-208 - 475 1.3e-39 131.4 76.6 9 11 6.4e-05 0.046 14.6 0.5 1 23 394 416 394 417 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF383-208 - 475 1.3e-39 131.4 76.6 10 11 9.1e-06 0.0065 17.2 1.4 1 23 422 444 422 445 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF383-208 - 475 1.3e-39 131.4 76.6 11 11 2.4e-05 0.017 15.9 0.1 1 23 450 472 450 473 0.91 C2H2-type zinc finger KRAB PF01352.27 42 ZNF383-208 - 475 6.6e-25 86.5 0.4 1 1 1.7e-27 1.2e-24 85.6 0.4 1 42 5 46 5 46 0.99 KRAB box zf-C2H2_6 PF13912.6 27 ZNF383-208 - 475 1.9e-23 81.9 77.7 1 11 0.0049 3.5 7.7 1.1 2 12 170 180 170 181 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF383-208 - 475 1.9e-23 81.9 77.7 2 11 0.01 7.5 6.7 2.6 2 12 198 208 197 218 0.92 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF383-208 - 475 1.9e-23 81.9 77.7 3 11 0.0016 1.2 9.2 1.4 2 12 226 236 226 236 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF383-208 - 475 1.9e-23 81.9 77.7 4 11 1.2e-05 0.0089 16.0 1.4 2 24 254 276 254 279 0.90 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF383-208 - 475 1.9e-23 81.9 77.7 5 11 0.0004 0.29 11.2 0.8 2 13 282 293 282 304 0.82 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF383-208 - 475 1.9e-23 81.9 77.7 6 11 0.001 0.72 9.9 0.8 2 11 310 319 310 321 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF383-208 - 475 1.9e-23 81.9 77.7 7 11 6.6e-08 4.7e-05 23.3 0.6 2 24 338 360 338 363 0.92 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF383-208 - 475 1.9e-23 81.9 77.7 8 11 0.0048 3.4 7.8 0.4 2 12 366 376 366 389 0.76 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF383-208 - 475 1.9e-23 81.9 77.7 9 11 0.033 24 5.1 0.4 2 12 394 404 394 417 0.88 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF383-208 - 475 1.9e-23 81.9 77.7 10 11 1.3e-05 0.0091 16.0 1.5 2 24 422 444 422 447 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF383-208 - 475 1.9e-23 81.9 77.7 11 11 2e-06 0.0014 18.6 0.4 2 20 450 468 450 472 0.94 C2H2-type zinc finger zf-C2H2_11 PF16622.5 29 ZNF383-208 - 475 6.1e-13 48.3 53.9 1 11 0.28 2e+02 1.8 0.2 6 15 171 180 169 191 0.80 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF383-208 - 475 6.1e-13 48.3 53.9 2 11 0.014 9.8 6.0 1.6 4 26 197 219 195 220 0.89 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF383-208 - 475 6.1e-13 48.3 53.9 3 11 0.0019 1.3 8.8 1.8 6 26 227 247 224 248 0.93 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF383-208 - 475 6.1e-13 48.3 53.9 4 11 0.23 1.7e+02 2.1 0.3 6 15 255 264 253 275 0.79 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF383-208 - 475 6.1e-13 48.3 53.9 5 11 0.053 38 4.2 0.2 7 26 284 303 280 304 0.88 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF383-208 - 475 6.1e-13 48.3 53.9 6 11 0.0056 4 7.3 0.1 6 26 311 331 308 332 0.91 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF383-208 - 475 6.1e-13 48.3 53.9 7 11 0.00025 0.18 11.6 0.1 6 26 339 359 336 360 0.93 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF383-208 - 475 6.1e-13 48.3 53.9 8 11 0.0007 0.5 10.2 0.2 7 26 368 387 365 388 0.94 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF383-208 - 475 6.1e-13 48.3 53.9 9 11 0.0022 1.5 8.6 0.2 6 26 395 415 392 416 0.89 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF383-208 - 475 6.1e-13 48.3 53.9 10 11 0.0014 1 9.2 0.1 5 26 422 443 418 444 0.90 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF383-208 - 475 6.1e-13 48.3 53.9 11 11 0.00062 0.45 10.3 0.1 6 24 451 469 448 472 0.89 zinc-finger C2H2-type zf-C2H2_jaz PF12171.8 27 ZNF383-208 - 475 7.4e-13 48.4 55.7 1 11 0.022 16 5.9 0.9 2 22 170 190 169 190 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF383-208 - 475 7.4e-13 48.4 55.7 2 11 0.095 68 3.9 1.1 2 12 198 208 197 218 0.87 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF383-208 - 475 7.4e-13 48.4 55.7 3 11 0.015 11 6.5 1.0 2 21 226 245 225 246 0.86 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF383-208 - 475 7.4e-13 48.4 55.7 4 11 0.18 1.3e+02 3.0 1.1 2 12 254 264 253 273 0.91 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF383-208 - 475 7.4e-13 48.4 55.7 5 11 0.004 2.9 8.3 0.3 2 20 282 300 281 300 0.87 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF383-208 - 475 7.4e-13 48.4 55.7 6 11 0.0044 3.2 8.2 0.2 2 22 310 330 309 330 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF383-208 - 475 7.4e-13 48.4 55.7 7 11 3e-05 0.022 15.1 0.0 2 22 338 358 337 358 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF383-208 - 475 7.4e-13 48.4 55.7 8 11 0.00071 0.51 10.7 0.1 2 22 366 386 365 386 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF383-208 - 475 7.4e-13 48.4 55.7 9 11 0.037 27 5.2 0.3 2 21 394 413 393 414 0.84 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF383-208 - 475 7.4e-13 48.4 55.7 10 11 0.019 14 6.1 0.5 2 22 422 442 421 442 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF383-208 - 475 7.4e-13 48.4 55.7 11 11 0.0012 0.84 10.0 0.0 2 20 450 468 449 469 0.92 Zinc-finger double-stranded RNA-binding Zn-ribbon_8 PF09723.10 40 ZNF383-208 - 475 7.9e-12 45.1 68.3 1 11 0.00028 0.2 11.8 5.7 6 34 170 205 169 206 0.90 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF383-208 - 475 7.9e-12 45.1 68.3 2 11 0.025 18 5.6 9.3 6 34 198 233 197 236 0.82 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF383-208 - 475 7.9e-12 45.1 68.3 3 11 0.00044 0.32 11.2 7.2 6 34 226 261 224 265 0.93 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF383-208 - 475 7.9e-12 45.1 68.3 4 11 6.3e-05 0.045 13.9 5.4 6 38 254 293 253 294 0.92 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF383-208 - 475 7.9e-12 45.1 68.3 5 11 7.9e-05 0.056 13.6 3.7 6 36 282 319 281 326 0.82 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF383-208 - 475 7.9e-12 45.1 68.3 6 11 2.3e-05 0.017 15.2 5.6 6 34 310 345 309 348 0.92 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF383-208 - 475 7.9e-12 45.1 68.3 7 11 1.2e-05 0.0086 16.2 3.9 6 36 338 375 337 378 0.91 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF383-208 - 475 7.9e-12 45.1 68.3 8 11 0.00068 0.49 10.6 3.8 6 34 366 401 365 404 0.89 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF383-208 - 475 7.9e-12 45.1 68.3 9 11 0.00014 0.1 12.8 6.2 6 37 394 432 393 434 0.86 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF383-208 - 475 7.9e-12 45.1 68.3 10 11 0.00042 0.3 11.2 6.4 6 34 422 457 420 461 0.86 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF383-208 - 475 7.9e-12 45.1 68.3 11 11 0.023 16 5.7 0.4 6 16 450 460 449 469 0.87 Zinc ribbon domain XPA_N PF01286.18 32 ZNF383-208 - 475 1.6e-09 37.6 63.8 1 11 0.024 18 5.5 0.3 3 12 171 180 169 185 0.89 XPA protein N-terminal XPA_N PF01286.18 32 ZNF383-208 - 475 1.6e-09 37.6 63.8 2 11 0.86 6.1e+02 0.6 3.3 3 11 199 207 198 209 0.87 XPA protein N-terminal XPA_N PF01286.18 32 ZNF383-208 - 475 1.6e-09 37.6 63.8 3 11 0.0013 0.96 9.6 1.9 3 18 227 243 225 245 0.76 XPA protein N-terminal XPA_N PF01286.18 32 ZNF383-208 - 475 1.6e-09 37.6 63.8 4 11 0.018 13 5.9 0.8 3 11 255 263 253 269 0.90 XPA protein N-terminal XPA_N PF01286.18 32 ZNF383-208 - 475 1.6e-09 37.6 63.8 5 11 0.022 16 5.7 0.1 3 14 283 294 281 300 0.76 XPA protein N-terminal XPA_N PF01286.18 32 ZNF383-208 - 475 1.6e-09 37.6 63.8 6 11 0.00085 0.61 10.2 0.2 3 14 311 322 309 328 0.86 XPA protein N-terminal XPA_N PF01286.18 32 ZNF383-208 - 475 1.6e-09 37.6 63.8 7 11 0.0072 5.1 7.2 0.1 3 12 339 348 337 356 0.86 XPA protein N-terminal XPA_N PF01286.18 32 ZNF383-208 - 475 1.6e-09 37.6 63.8 8 11 0.0011 0.77 9.9 0.2 3 14 367 378 365 384 0.85 XPA protein N-terminal XPA_N PF01286.18 32 ZNF383-208 - 475 1.6e-09 37.6 63.8 9 11 0.0011 0.76 9.9 0.3 3 19 395 412 393 413 0.82 XPA protein N-terminal XPA_N PF01286.18 32 ZNF383-208 - 475 1.6e-09 37.6 63.8 10 11 0.046 33 4.6 1.5 3 12 423 432 421 435 0.89 XPA protein N-terminal XPA_N PF01286.18 32 ZNF383-208 - 475 1.6e-09 37.6 63.8 11 11 0.0074 5.3 7.2 0.1 3 12 451 460 449 462 0.89 XPA protein N-terminal zf_UBZ PF18439.1 32 ZNF383-208 - 475 5.3e-09 35.5 54.1 1 11 0.00098 0.7 9.5 0.2 3 21 170 189 168 189 0.92 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF383-208 - 475 5.3e-09 35.5 54.1 2 11 0.0091 6.5 6.4 0.8 2 14 197 209 196 216 0.87 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF383-208 - 475 5.3e-09 35.5 54.1 3 11 0.009 6.4 6.5 1.0 3 18 226 242 224 245 0.78 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF383-208 - 475 5.3e-09 35.5 54.1 4 11 0.03 21 4.8 0.3 3 13 254 264 252 265 0.87 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF383-208 - 475 5.3e-09 35.5 54.1 5 11 0.18 1.3e+02 2.3 0.1 3 17 282 297 280 301 0.79 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF383-208 - 475 5.3e-09 35.5 54.1 6 11 0.0031 2.2 7.9 0.3 3 21 310 329 308 329 0.86 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF383-208 - 475 5.3e-09 35.5 54.1 7 11 0.0036 2.6 7.7 0.1 3 20 338 356 336 357 0.82 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF383-208 - 475 5.3e-09 35.5 54.1 8 11 0.0011 0.77 9.4 0.3 3 21 366 385 364 385 0.92 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF383-208 - 475 5.3e-09 35.5 54.1 9 11 0.035 25 4.6 0.2 3 20 394 412 392 413 0.81 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF383-208 - 475 5.3e-09 35.5 54.1 10 11 0.1 75 3.1 0.6 3 12 422 431 420 440 0.88 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF383-208 - 475 5.3e-09 35.5 54.1 11 11 0.0047 3.3 7.4 0.1 3 20 450 468 448 469 0.79 Ubiquitin-Binding Zinc Finger # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF383-208.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF383-208.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF383-208.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF383-208.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF383-208.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:05:12 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-C2H2 PF00096.26 23 ZNF384-201 - 516 4.1e-27 93.1 54.4 1 6 0.00016 0.11 13.0 2.9 1 23 228 250 228 250 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF384-201 - 516 4.1e-27 93.1 54.4 2 6 3.9e-08 2.7e-05 24.4 3.3 1 23 256 278 256 278 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF384-201 - 516 4.1e-27 93.1 54.4 3 6 3.4e-07 0.00024 21.4 4.0 1 23 284 306 284 306 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF384-201 - 516 4.1e-27 93.1 54.4 4 6 5.5e-07 0.00038 20.8 1.4 1 23 312 336 312 336 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF384-201 - 516 4.1e-27 93.1 54.4 5 6 5.2e-07 0.00036 20.8 2.3 1 23 342 364 342 364 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF384-201 - 516 4.1e-27 93.1 54.4 6 6 1.3e-07 8.9e-05 22.7 2.3 1 23 372 394 372 394 0.99 Zinc finger, C2H2 type zf-H2C2_2 PF13465.6 26 ZNF384-201 - 516 5e-25 86.8 50.4 1 7 1.8 1.2e+03 0.2 0.2 9 24 221 237 219 239 0.73 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF384-201 - 516 5e-25 86.8 50.4 2 7 2.9e-07 0.0002 21.6 5.9 5 26 246 267 243 267 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF384-201 - 516 5e-25 86.8 50.4 3 7 1.6e-08 1.1e-05 25.6 0.3 2 25 271 294 270 295 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF384-201 - 516 5e-25 86.8 50.4 4 7 6.4e-08 4.4e-05 23.7 1.6 1 25 298 324 298 325 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF384-201 - 516 5e-25 86.8 50.4 5 7 7.5e-07 0.00052 20.3 4.7 1 25 328 352 328 353 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF384-201 - 516 5e-25 86.8 50.4 6 7 8.4e-05 0.058 13.9 0.6 2 26 357 383 356 383 0.86 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF384-201 - 516 5e-25 86.8 50.4 7 7 0.0046 3.2 8.4 0.1 2 12 387 397 386 401 0.88 Zinc-finger double domain zf-C2H2_4 PF13894.6 24 ZNF384-201 - 516 3.2e-16 58.6 48.9 1 6 0.00025 0.17 12.8 2.1 1 23 228 250 228 251 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF384-201 - 516 3.2e-16 58.6 48.9 2 6 2.3e-06 0.0016 19.1 2.8 1 23 256 278 256 279 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF384-201 - 516 3.2e-16 58.6 48.9 3 6 0.00019 0.13 13.2 3.1 1 23 284 306 284 307 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF384-201 - 516 3.2e-16 58.6 48.9 4 6 0.0014 1 10.4 1.1 1 23 312 336 312 337 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF384-201 - 516 3.2e-16 58.6 48.9 5 6 0.00071 0.49 11.4 2.0 1 23 342 364 342 365 0.97 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF384-201 - 516 3.2e-16 58.6 48.9 6 6 1.2e-06 0.00082 20.0 1.0 1 23 372 394 372 395 0.96 C2H2-type zinc finger # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF384-201.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF384-201.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF384-201.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF384-201.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF384-201.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:05:13 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-C2H2 PF00096.26 23 ZNF384-202 - 461 1.8e-27 94.2 54.4 1 6 0.00016 0.094 13.2 2.9 1 23 173 195 173 195 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF384-202 - 461 1.8e-27 94.2 54.4 2 6 4e-08 2.3e-05 24.6 3.3 1 23 201 223 201 223 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF384-202 - 461 1.8e-27 94.2 54.4 3 6 3.5e-07 0.00021 21.6 4.0 1 23 229 251 229 251 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF384-202 - 461 1.8e-27 94.2 54.4 4 6 5.7e-07 0.00033 20.9 1.4 1 23 257 281 257 281 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF384-202 - 461 1.8e-27 94.2 54.4 5 6 5.5e-07 0.00032 21.0 2.3 1 23 287 309 287 309 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF384-202 - 461 1.8e-27 94.2 54.4 6 6 1.3e-07 7.7e-05 22.9 2.3 1 23 317 339 317 339 0.99 Zinc finger, C2H2 type zf-H2C2_2 PF13465.6 26 ZNF384-202 - 461 2e-25 88.0 50.4 1 7 1.9 1.1e+03 0.4 0.2 9 24 166 182 164 184 0.73 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF384-202 - 461 2e-25 88.0 50.4 2 7 3e-07 0.00017 21.8 5.9 5 26 191 212 188 212 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF384-202 - 461 2e-25 88.0 50.4 3 7 1.6e-08 9.4e-06 25.8 0.3 2 25 216 239 215 240 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF384-202 - 461 2e-25 88.0 50.4 4 7 6.7e-08 3.9e-05 23.9 1.6 1 25 243 269 243 270 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF384-202 - 461 2e-25 88.0 50.4 5 7 7.8e-07 0.00045 20.5 4.7 1 25 273 297 273 298 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF384-202 - 461 2e-25 88.0 50.4 6 7 8.7e-05 0.05 14.0 0.6 2 26 302 328 301 328 0.86 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF384-202 - 461 2e-25 88.0 50.4 7 7 0.0048 2.8 8.5 0.1 2 12 332 342 331 346 0.88 Zinc-finger double domain zf-C2H2_4 PF13894.6 24 ZNF384-202 - 461 1.5e-16 59.6 48.9 1 6 0.00026 0.15 13.0 2.1 1 23 173 195 173 196 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF384-202 - 461 1.5e-16 59.6 48.9 2 6 2.4e-06 0.0014 19.3 2.8 1 23 201 223 201 224 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF384-202 - 461 1.5e-16 59.6 48.9 3 6 0.0002 0.11 13.3 3.1 1 23 229 251 229 252 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF384-202 - 461 1.5e-16 59.6 48.9 4 6 0.0015 0.87 10.6 1.1 1 23 257 281 257 282 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF384-202 - 461 1.5e-16 59.6 48.9 5 6 0.00074 0.43 11.6 2.0 1 23 287 309 287 310 0.97 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF384-202 - 461 1.5e-16 59.6 48.9 6 6 1.2e-06 0.00071 20.2 1.0 1 23 317 339 317 340 0.96 C2H2-type zinc finger # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF384-202.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF384-202.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF384-202.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF384-202.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF384-202.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:05:13 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-C2H2 PF00096.26 23 ZNF384-203 - 577 1.4e-36 122.9 77.5 1 8 0.00018 0.12 12.8 2.9 1 23 228 250 228 250 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF384-203 - 577 1.4e-36 122.9 77.5 2 8 4.4e-08 3e-05 24.2 3.3 1 23 256 278 256 278 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF384-203 - 577 1.4e-36 122.9 77.5 3 8 3.9e-07 0.00027 21.2 4.0 1 23 284 306 284 306 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF384-203 - 577 1.4e-36 122.9 77.5 4 8 3.3e-07 0.00023 21.5 3.8 1 23 317 339 317 339 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF384-203 - 577 1.4e-36 122.9 77.5 5 8 1.8e-07 0.00012 22.3 3.5 1 23 345 367 345 367 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF384-203 - 577 1.4e-36 122.9 77.5 6 8 6.3e-07 0.00043 20.6 1.4 1 23 373 397 373 397 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF384-203 - 577 1.4e-36 122.9 77.5 7 8 6e-07 0.00041 20.6 2.3 1 23 403 425 403 425 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF384-203 - 577 1.4e-36 122.9 77.5 8 8 1.5e-07 0.0001 22.6 2.3 1 23 433 455 433 455 0.99 Zinc finger, C2H2 type zf-H2C2_2 PF13465.6 26 ZNF384-203 - 577 1.9e-35 119.7 70.9 1 9 2 1.4e+03 -0.0 0.2 9 24 221 237 219 239 0.73 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF384-203 - 577 1.9e-35 119.7 70.9 2 9 3.3e-07 0.00023 21.5 5.9 5 26 246 267 243 267 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF384-203 - 577 1.9e-35 119.7 70.9 3 9 1.8e-08 1.2e-05 25.5 0.3 2 25 271 294 270 295 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF384-203 - 577 1.9e-35 119.7 70.9 4 9 5e-06 0.0034 17.7 6.7 2 26 299 328 298 328 0.69 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF384-203 - 577 1.9e-35 119.7 70.9 5 9 6.7e-09 4.6e-06 26.8 0.3 2 25 332 355 331 356 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF384-203 - 577 1.9e-35 119.7 70.9 6 9 7.4e-08 5.1e-05 23.5 1.6 1 25 359 385 359 386 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF384-203 - 577 1.9e-35 119.7 70.9 7 9 8.6e-07 0.00059 20.1 4.7 1 25 389 413 389 414 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF384-203 - 577 1.9e-35 119.7 70.9 8 9 9.6e-05 0.066 13.7 0.6 2 26 418 444 417 444 0.86 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF384-203 - 577 1.9e-35 119.7 70.9 9 9 0.0052 3.6 8.2 0.1 2 12 448 458 447 462 0.88 Zinc-finger double domain zf-C2H2_4 PF13894.6 24 ZNF384-203 - 577 5e-22 76.7 70.3 1 8 0.00029 0.2 12.6 2.1 1 23 228 250 228 251 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF384-203 - 577 5e-22 76.7 70.3 2 8 2.6e-06 0.0018 18.9 2.8 1 23 256 278 256 279 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF384-203 - 577 5e-22 76.7 70.3 3 8 0.0002 0.14 13.1 3.3 1 23 284 306 284 307 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF384-203 - 577 5e-22 76.7 70.3 4 8 5.4e-06 0.0037 18.0 3.2 1 23 317 339 317 340 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF384-203 - 577 5e-22 76.7 70.3 5 8 0.00012 0.083 13.8 2.5 1 23 345 367 345 368 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF384-203 - 577 5e-22 76.7 70.3 6 8 0.0017 1.1 10.2 1.1 1 23 373 397 373 398 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF384-203 - 577 5e-22 76.7 70.3 7 8 0.00081 0.56 11.2 2.0 1 23 403 425 403 426 0.97 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF384-203 - 577 5e-22 76.7 70.3 8 8 1.4e-06 0.00093 19.8 1.0 1 23 433 455 433 456 0.96 C2H2-type zinc finger zf-C2H2_jaz PF12171.8 27 ZNF384-203 - 577 1.3e-07 31.7 53.4 1 8 0.17 1.2e+02 3.2 4.5 2 27 228 257 227 257 0.91 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF384-203 - 577 1.3e-07 31.7 53.4 2 8 5.1e-06 0.0035 17.6 0.5 2 22 256 276 255 276 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF384-203 - 577 1.3e-07 31.7 53.4 3 8 0.072 50 4.4 0.9 2 21 284 303 283 304 0.89 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF384-203 - 577 1.3e-07 31.7 53.4 4 8 4e-05 0.028 14.7 0.3 2 22 317 337 316 337 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF384-203 - 577 1.3e-07 31.7 53.4 5 8 0.012 8.2 6.8 1.2 2 21 345 364 344 365 0.89 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF384-203 - 577 1.3e-07 31.7 53.4 6 8 8.1 5.6e+03 -2.2 0.5 7 22 380 395 380 398 0.81 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF384-203 - 577 1.3e-07 31.7 53.4 7 8 0.002 1.4 9.3 1.1 2 24 403 425 402 429 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF384-203 - 577 1.3e-07 31.7 53.4 8 8 0.00078 0.54 10.6 0.5 2 22 433 453 432 456 0.91 Zinc-finger double-stranded RNA-binding # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF384-203.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF384-203.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF384-203.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF384-203.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF384-203.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:05:14 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-C2H2 PF00096.26 23 ZNF384-204 - 577 1.4e-36 122.9 77.5 1 8 0.00018 0.12 12.8 2.9 1 23 228 250 228 250 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF384-204 - 577 1.4e-36 122.9 77.5 2 8 4.4e-08 3e-05 24.2 3.3 1 23 256 278 256 278 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF384-204 - 577 1.4e-36 122.9 77.5 3 8 3.9e-07 0.00027 21.2 4.0 1 23 284 306 284 306 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF384-204 - 577 1.4e-36 122.9 77.5 4 8 3.3e-07 0.00023 21.5 3.8 1 23 317 339 317 339 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF384-204 - 577 1.4e-36 122.9 77.5 5 8 1.8e-07 0.00012 22.3 3.5 1 23 345 367 345 367 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF384-204 - 577 1.4e-36 122.9 77.5 6 8 6.3e-07 0.00043 20.6 1.4 1 23 373 397 373 397 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF384-204 - 577 1.4e-36 122.9 77.5 7 8 6e-07 0.00041 20.6 2.3 1 23 403 425 403 425 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF384-204 - 577 1.4e-36 122.9 77.5 8 8 1.5e-07 0.0001 22.6 2.3 1 23 433 455 433 455 0.99 Zinc finger, C2H2 type zf-H2C2_2 PF13465.6 26 ZNF384-204 - 577 1.9e-35 119.7 70.9 1 9 2 1.4e+03 -0.0 0.2 9 24 221 237 219 239 0.73 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF384-204 - 577 1.9e-35 119.7 70.9 2 9 3.3e-07 0.00023 21.5 5.9 5 26 246 267 243 267 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF384-204 - 577 1.9e-35 119.7 70.9 3 9 1.8e-08 1.2e-05 25.5 0.3 2 25 271 294 270 295 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF384-204 - 577 1.9e-35 119.7 70.9 4 9 5e-06 0.0034 17.7 6.7 2 26 299 328 298 328 0.69 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF384-204 - 577 1.9e-35 119.7 70.9 5 9 6.7e-09 4.6e-06 26.8 0.3 2 25 332 355 331 356 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF384-204 - 577 1.9e-35 119.7 70.9 6 9 7.4e-08 5.1e-05 23.5 1.6 1 25 359 385 359 386 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF384-204 - 577 1.9e-35 119.7 70.9 7 9 8.6e-07 0.00059 20.1 4.7 1 25 389 413 389 414 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF384-204 - 577 1.9e-35 119.7 70.9 8 9 9.6e-05 0.066 13.7 0.6 2 26 418 444 417 444 0.86 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF384-204 - 577 1.9e-35 119.7 70.9 9 9 0.0052 3.6 8.2 0.1 2 12 448 458 447 462 0.88 Zinc-finger double domain zf-C2H2_4 PF13894.6 24 ZNF384-204 - 577 5e-22 76.7 70.3 1 8 0.00029 0.2 12.6 2.1 1 23 228 250 228 251 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF384-204 - 577 5e-22 76.7 70.3 2 8 2.6e-06 0.0018 18.9 2.8 1 23 256 278 256 279 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF384-204 - 577 5e-22 76.7 70.3 3 8 0.0002 0.14 13.1 3.3 1 23 284 306 284 307 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF384-204 - 577 5e-22 76.7 70.3 4 8 5.4e-06 0.0037 18.0 3.2 1 23 317 339 317 340 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF384-204 - 577 5e-22 76.7 70.3 5 8 0.00012 0.083 13.8 2.5 1 23 345 367 345 368 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF384-204 - 577 5e-22 76.7 70.3 6 8 0.0017 1.1 10.2 1.1 1 23 373 397 373 398 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF384-204 - 577 5e-22 76.7 70.3 7 8 0.00081 0.56 11.2 2.0 1 23 403 425 403 426 0.97 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF384-204 - 577 5e-22 76.7 70.3 8 8 1.4e-06 0.00093 19.8 1.0 1 23 433 455 433 456 0.96 C2H2-type zinc finger zf-C2H2_jaz PF12171.8 27 ZNF384-204 - 577 1.3e-07 31.7 53.4 1 8 0.17 1.2e+02 3.2 4.5 2 27 228 257 227 257 0.91 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF384-204 - 577 1.3e-07 31.7 53.4 2 8 5.1e-06 0.0035 17.6 0.5 2 22 256 276 255 276 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF384-204 - 577 1.3e-07 31.7 53.4 3 8 0.072 50 4.4 0.9 2 21 284 303 283 304 0.89 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF384-204 - 577 1.3e-07 31.7 53.4 4 8 4e-05 0.028 14.7 0.3 2 22 317 337 316 337 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF384-204 - 577 1.3e-07 31.7 53.4 5 8 0.012 8.2 6.8 1.2 2 21 345 364 344 365 0.89 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF384-204 - 577 1.3e-07 31.7 53.4 6 8 8.1 5.6e+03 -2.2 0.5 7 22 380 395 380 398 0.81 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF384-204 - 577 1.3e-07 31.7 53.4 7 8 0.002 1.4 9.3 1.1 2 24 403 425 402 429 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF384-204 - 577 1.3e-07 31.7 53.4 8 8 0.00078 0.54 10.6 0.5 2 22 433 453 432 456 0.91 Zinc-finger double-stranded RNA-binding # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF384-204.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF384-204.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF384-204.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF384-204.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF384-204.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:05:14 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF384-205.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF384-205.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF384-205.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF384-205.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF384-205.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:05:15 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF384-206.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF384-206.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF384-206.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF384-206.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF384-206.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:05:15 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF384-207.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF384-207.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF384-207.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF384-207.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF384-207.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:05:15 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF384-208.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF384-208.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF384-208.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF384-208.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF384-208.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:05:16 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF384-209.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF384-209.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF384-209.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF384-209.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF384-209.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:05:16 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF384-211.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF384-211.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF384-211.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF384-211.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF384-211.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:05:16 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-C2H2 PF00096.26 23 ZNF384-213 - 159 1.8e-13 50.1 24.3 1 3 4.5e-05 0.023 15.1 2.9 1 23 83 105 83 105 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF384-213 - 159 1.8e-13 50.1 24.3 2 3 1.1e-08 5.6e-06 26.5 3.3 1 23 111 133 111 133 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF384-213 - 159 1.8e-13 50.1 24.3 3 3 9.2e-07 0.00047 20.5 2.7 1 21 139 159 139 159 0.97 Zinc finger, C2H2 type zf-H2C2_2 PF13465.6 26 ZNF384-213 - 159 7.1e-11 42.0 22.7 1 4 0.55 2.8e+02 2.2 0.2 9 24 76 92 74 94 0.73 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF384-213 - 159 7.1e-11 42.0 22.7 2 4 8.3e-08 4.2e-05 23.8 5.9 5 26 101 122 98 122 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF384-213 - 159 7.1e-11 42.0 22.7 3 4 4.4e-09 2.2e-06 27.8 0.3 2 25 126 149 125 150 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF384-213 - 159 7.1e-11 42.0 22.7 4 4 9.1 4.6e+03 -1.7 0.3 5 10 153 158 152 159 0.50 Zinc-finger double domain zf-C2H2_4 PF13894.6 24 ZNF384-213 - 159 1.5e-09 37.8 22.3 1 3 6.9e-05 0.035 14.9 2.1 1 23 83 105 83 106 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF384-213 - 159 1.5e-09 37.8 22.3 2 3 6.3e-07 0.00033 21.3 2.8 1 23 111 133 111 134 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF384-213 - 159 1.5e-09 37.8 22.3 3 3 0.00022 0.11 13.4 2.3 1 19 139 157 139 159 0.93 C2H2-type zinc finger # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF384-213.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF384-213.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF384-213.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF384-213.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF384-213.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:05:17 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF384-214.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF384-214.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF384-214.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF384-214.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF384-214.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:05:17 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF384-216.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF384-216.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF384-216.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF384-216.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF384-216.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:05:17 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZNF391-201 - 358 5.9e-73 238.3 61.7 1 10 0.00077 0.6 10.6 1.4 2 25 96 119 95 120 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF391-201 - 358 5.9e-73 238.3 61.7 2 10 1.5e-09 1.1e-06 28.7 0.2 2 25 124 147 123 148 0.90 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF391-201 - 358 5.9e-73 238.3 61.7 3 10 1.3e-11 1e-08 35.2 1.1 1 25 151 175 151 176 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF391-201 - 358 5.9e-73 238.3 61.7 4 10 1.4e-12 1.1e-09 38.3 0.8 1 25 179 203 179 204 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF391-201 - 358 5.9e-73 238.3 61.7 5 10 1.7e-11 1.3e-08 34.9 0.3 1 25 207 231 207 232 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF391-201 - 358 5.9e-73 238.3 61.7 6 10 2.5e-11 2e-08 34.3 0.3 4 25 238 259 237 259 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF391-201 - 358 5.9e-73 238.3 61.7 7 10 3.4e-12 2.6e-09 37.1 0.3 1 25 263 287 263 288 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF391-201 - 358 5.9e-73 238.3 61.7 8 10 3.8e-10 2.9e-07 30.6 0.6 1 25 291 315 291 316 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF391-201 - 358 5.9e-73 238.3 61.7 9 10 3.4e-10 2.7e-07 30.7 0.3 5 24 323 342 319 342 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF391-201 - 358 5.9e-73 238.3 61.7 10 10 5.8 4.5e+03 -1.6 1.6 2 12 348 358 348 358 0.86 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZNF391-201 - 358 8.3e-57 186.6 71.0 1 10 0.07 55 4.5 0.1 9 21 89 101 87 102 0.85 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF391-201 - 358 8.3e-57 186.6 71.0 2 10 5.9e-07 0.00046 20.5 1.5 2 23 110 131 109 131 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF391-201 - 358 8.3e-57 186.6 71.0 3 10 2.2e-09 1.8e-06 28.1 3.1 1 23 137 159 137 159 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF391-201 - 358 8.3e-57 186.6 71.0 4 10 7.3e-09 5.7e-06 26.5 1.5 1 23 165 187 165 187 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF391-201 - 358 8.3e-57 186.6 71.0 5 10 1.3e-09 1e-06 28.9 0.9 1 23 193 215 193 215 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF391-201 - 358 8.3e-57 186.6 71.0 6 10 2.2e-07 0.00017 21.9 0.2 1 23 221 243 221 243 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF391-201 - 358 8.3e-57 186.6 71.0 7 10 9.8e-07 0.00077 19.8 0.4 1 23 249 271 249 271 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF391-201 - 358 8.3e-57 186.6 71.0 8 10 5.9e-10 4.6e-07 29.9 0.5 1 23 277 299 277 299 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF391-201 - 358 8.3e-57 186.6 71.0 9 10 1.2e-08 9.6e-06 25.8 1.3 1 23 305 327 305 327 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF391-201 - 358 8.3e-57 186.6 71.0 10 10 3.2e-08 2.5e-05 24.5 4.2 1 23 333 355 333 355 0.98 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZNF391-201 - 358 1.1e-29 100.6 67.0 1 9 0.00014 0.11 13.4 1.2 2 23 110 131 109 132 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF391-201 - 358 1.1e-29 100.6 67.0 2 9 4.4e-06 0.0034 18.1 2.3 1 23 137 159 137 160 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF391-201 - 358 1.1e-29 100.6 67.0 3 9 4e-05 0.031 15.1 1.2 1 23 165 187 165 188 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF391-201 - 358 1.1e-29 100.6 67.0 4 9 6.2e-07 0.00048 20.7 0.8 1 23 193 215 193 216 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF391-201 - 358 1.1e-29 100.6 67.0 5 9 7.2e-05 0.056 14.3 0.1 1 23 221 243 221 244 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF391-201 - 358 1.1e-29 100.6 67.0 6 9 0.00057 0.44 11.5 0.6 1 23 249 271 249 272 0.87 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF391-201 - 358 1.1e-29 100.6 67.0 7 9 2.3e-06 0.0018 18.9 0.7 1 23 277 299 277 300 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF391-201 - 358 1.1e-29 100.6 67.0 8 9 5.4e-06 0.0042 17.8 1.0 1 23 305 327 305 328 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF391-201 - 358 1.1e-29 100.6 67.0 9 9 0.00015 0.11 13.3 3.4 1 23 333 355 333 356 0.91 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF391-201 - 358 3.5e-23 81.1 65.5 1 9 0.00046 0.36 10.9 0.5 3 22 110 129 110 132 0.86 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF391-201 - 358 3.5e-23 81.1 65.5 2 9 3.3e-06 0.0026 17.7 2.5 2 24 137 159 137 162 0.95 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF391-201 - 358 3.5e-23 81.1 65.5 3 9 0.00036 0.28 11.2 0.5 2 13 165 176 165 187 0.89 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF391-201 - 358 3.5e-23 81.1 65.5 4 9 1.4e-06 0.0011 18.9 2.0 2 26 193 217 193 218 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF391-201 - 358 3.5e-23 81.1 65.5 5 9 0.0016 1.3 9.1 0.4 2 11 221 230 221 231 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF391-201 - 358 3.5e-23 81.1 65.5 6 9 1.4e-06 0.0011 18.9 0.9 2 24 249 271 249 274 0.96 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF391-201 - 358 3.5e-23 81.1 65.5 7 9 6.2e-07 0.00048 20.0 0.9 2 24 277 299 277 302 0.92 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF391-201 - 358 3.5e-23 81.1 65.5 8 9 4.5e-05 0.035 14.1 0.9 2 24 305 327 305 330 0.95 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF391-201 - 358 3.5e-23 81.1 65.5 9 9 0.61 4.8e+02 0.9 2.9 2 11 333 342 333 343 0.95 C2H2-type zinc finger Zn-ribbon_8 PF09723.10 40 ZNF391-201 - 358 1.4e-09 37.9 49.3 1 9 1.2 9.1e+02 0.1 1.6 7 14 110 117 98 119 0.57 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF391-201 - 358 1.4e-09 37.9 49.3 2 9 0.082 64 3.8 6.3 7 38 110 148 107 149 0.77 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF391-201 - 358 1.4e-09 37.9 49.3 3 9 6.1e-05 0.048 13.8 4.8 6 38 137 176 136 177 0.91 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF391-201 - 358 1.4e-09 37.9 49.3 4 9 8.7e-06 0.0068 16.5 4.1 6 38 165 204 164 206 0.91 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF391-201 - 358 1.4e-09 37.9 49.3 5 9 0.00027 0.21 11.7 5.0 6 34 193 228 191 229 0.87 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF391-201 - 358 1.4e-09 37.9 49.3 6 9 8.9e-05 0.069 13.3 3.9 6 34 221 256 220 259 0.91 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF391-201 - 358 1.4e-09 37.9 49.3 7 9 0.003 2.3 8.4 0.2 6 22 249 265 248 271 0.79 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF391-201 - 358 1.4e-09 37.9 49.3 8 9 4.9e-06 0.0038 17.3 2.3 6 36 277 314 276 317 0.89 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF391-201 - 358 1.4e-09 37.9 49.3 9 9 0.0069 5.4 7.2 0.5 6 15 333 342 332 352 0.88 Zinc ribbon domain zf_UBZ PF18439.1 32 ZNF391-201 - 358 3.1e-08 33.1 39.9 1 9 0.98 7.6e+02 -0.2 0.6 4 13 110 119 109 128 0.76 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF391-201 - 358 3.1e-08 33.1 39.9 2 9 0.001 0.78 9.4 0.5 3 21 137 156 135 156 0.92 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF391-201 - 358 3.1e-08 33.1 39.9 3 9 0.014 11 5.8 0.1 3 15 165 177 163 184 0.83 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF391-201 - 358 3.1e-08 33.1 39.9 4 9 0.00065 0.5 10.0 0.2 3 21 193 212 191 212 0.88 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF391-201 - 358 3.1e-08 33.1 39.9 5 9 0.038 29 4.4 0.1 3 12 221 230 219 240 0.82 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF391-201 - 358 3.1e-08 33.1 39.9 6 9 0.00055 0.43 10.2 0.1 3 21 249 268 247 268 0.86 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF391-201 - 358 3.1e-08 33.1 39.9 7 9 1.7e-05 0.013 15.1 0.2 3 21 277 296 275 296 0.94 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF391-201 - 358 3.1e-08 33.1 39.9 8 9 3 2.3e+03 -1.7 0.1 5 15 307 317 305 323 0.80 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF391-201 - 358 3.1e-08 33.1 39.9 9 9 0.067 52 3.6 0.6 3 12 333 342 331 352 0.81 Ubiquitin-Binding Zinc Finger zf-C2H2_jaz PF12171.8 27 ZNF391-201 - 358 3.2e-08 33.6 42.0 1 9 0.25 1.9e+02 2.5 0.6 4 20 111 127 110 127 0.87 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF391-201 - 358 3.2e-08 33.6 42.0 2 9 0.016 13 6.3 0.8 2 24 137 159 136 159 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF391-201 - 358 3.2e-08 33.6 42.0 3 9 0.023 18 5.7 0.1 2 21 165 184 164 185 0.88 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF391-201 - 358 3.2e-08 33.6 42.0 4 9 0.00014 0.11 12.8 0.3 2 24 193 215 192 215 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF391-201 - 358 3.2e-08 33.6 42.0 5 9 0.013 10 6.5 0.0 2 22 221 241 220 241 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF391-201 - 358 3.2e-08 33.6 42.0 6 9 0.3 2.3e+02 2.2 0.2 2 24 249 271 248 271 0.89 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF391-201 - 358 3.2e-08 33.6 42.0 7 9 0.00012 0.09 13.1 0.0 2 22 277 297 276 297 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF391-201 - 358 3.2e-08 33.6 42.0 8 9 0.0005 0.39 11.1 0.0 2 24 305 327 304 327 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF391-201 - 358 3.2e-08 33.6 42.0 9 9 6.9 5.4e+03 -2.1 1.1 2 11 333 342 332 353 0.72 Zinc-finger double-stranded RNA-binding XPA_N PF01286.18 32 ZNF391-201 - 358 1.8e-07 31.1 43.7 1 9 0.084 65 3.7 2.1 3 12 110 119 108 123 0.89 XPA protein N-terminal XPA_N PF01286.18 32 ZNF391-201 - 358 1.8e-07 31.1 43.7 2 9 0.013 10 6.2 0.3 3 14 138 149 136 152 0.90 XPA protein N-terminal XPA_N PF01286.18 32 ZNF391-201 - 358 1.8e-07 31.1 43.7 3 9 0.0025 2 8.6 0.1 3 14 166 177 164 181 0.89 XPA protein N-terminal XPA_N PF01286.18 32 ZNF391-201 - 358 1.8e-07 31.1 43.7 4 9 0.0036 2.8 8.1 0.2 3 14 194 205 192 209 0.90 XPA protein N-terminal XPA_N PF01286.18 32 ZNF391-201 - 358 1.8e-07 31.1 43.7 5 9 0.0026 2 8.5 0.1 3 13 222 232 220 233 0.92 XPA protein N-terminal XPA_N PF01286.18 32 ZNF391-201 - 358 1.8e-07 31.1 43.7 6 9 0.045 35 4.5 0.1 3 11 250 258 248 263 0.90 XPA protein N-terminal XPA_N PF01286.18 32 ZNF391-201 - 358 1.8e-07 31.1 43.7 7 9 0.017 13 5.9 0.2 3 14 278 289 276 293 0.89 XPA protein N-terminal XPA_N PF01286.18 32 ZNF391-201 - 358 1.8e-07 31.1 43.7 8 9 0.081 63 3.7 0.1 3 14 306 317 304 318 0.86 XPA protein N-terminal XPA_N PF01286.18 32 ZNF391-201 - 358 1.8e-07 31.1 43.7 9 9 0.0035 2.8 8.1 1.0 3 14 334 345 332 348 0.92 XPA protein N-terminal zf-C2H2_11 PF16622.5 29 ZNF391-201 - 358 2e-07 30.6 41.3 1 9 0.049 38 4.1 0.5 5 26 109 130 107 131 0.84 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF391-201 - 358 2e-07 30.6 41.3 2 9 0.13 98 2.8 0.3 6 20 138 152 135 157 0.79 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF391-201 - 358 2e-07 30.6 41.3 3 9 0.004 3.1 7.6 0.5 6 26 166 186 163 187 0.92 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF391-201 - 358 2e-07 30.6 41.3 4 9 0.0024 1.9 8.3 0.3 6 24 194 212 191 214 0.91 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF391-201 - 358 2e-07 30.6 41.3 5 9 0.11 88 3.0 0.1 5 14 221 230 218 242 0.85 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF391-201 - 358 2e-07 30.6 41.3 6 9 0.0042 3.3 7.6 0.0 5 23 249 267 246 270 0.87 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF391-201 - 358 2e-07 30.6 41.3 7 9 0.00044 0.35 10.7 0.1 5 26 277 298 274 299 0.90 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF391-201 - 358 2e-07 30.6 41.3 8 9 0.031 24 4.8 0.2 5 22 305 322 302 325 0.84 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF391-201 - 358 2e-07 30.6 41.3 9 9 0.014 11 5.9 1.1 5 23 333 351 330 354 0.91 zinc-finger C2H2-type C1_4 PF07975.12 55 ZNF391-201 - 358 3.8e-07 30.2 37.1 1 7 0.00037 0.29 11.4 0.1 21 48 104 131 82 134 0.76 TFIIH C1-like domain C1_4 PF07975.12 55 ZNF391-201 - 358 3.8e-07 30.2 37.1 2 7 0.0015 1.1 9.5 1.8 1 48 138 187 137 190 0.81 TFIIH C1-like domain C1_4 PF07975.12 55 ZNF391-201 - 358 3.8e-07 30.2 37.1 3 7 0.00095 0.74 10.1 2.4 1 48 194 243 194 247 0.77 TFIIH C1-like domain C1_4 PF07975.12 55 ZNF391-201 - 358 3.8e-07 30.2 37.1 4 7 0.12 91 3.4 0.2 19 35 242 258 231 271 0.80 TFIIH C1-like domain C1_4 PF07975.12 55 ZNF391-201 - 358 3.8e-07 30.2 37.1 5 7 0.0095 7.4 6.9 2.0 1 36 250 287 250 302 0.73 TFIIH C1-like domain C1_4 PF07975.12 55 ZNF391-201 - 358 3.8e-07 30.2 37.1 6 7 0.07 55 4.1 1.3 1 49 278 328 278 330 0.81 TFIIH C1-like domain C1_4 PF07975.12 55 ZNF391-201 - 358 3.8e-07 30.2 37.1 7 7 0.00059 0.46 10.8 3.8 2 49 307 356 306 357 0.79 TFIIH C1-like domain # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF391-201.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF391-201.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF391-201.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF391-201.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF391-201.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:05:18 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF391-202.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF391-202.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF391-202.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF391-202.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF391-202.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:05:18 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF391-203.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF391-203.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF391-203.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF391-203.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF391-203.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:05:19 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF391-204.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF391-204.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF391-204.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF391-204.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF391-204.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:05:19 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZNF394-201 - 561 1.8e-41 138.8 61.7 1 8 5.7e-05 0.053 14.0 0.6 10 26 353 369 340 369 0.89 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF394-201 - 561 1.8e-41 138.8 61.7 2 8 4e-10 3.8e-07 30.2 0.2 2 25 373 396 372 397 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF394-201 - 561 1.8e-41 138.8 61.7 3 8 1.9e-10 1.8e-07 31.3 1.2 1 25 400 424 400 425 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF394-201 - 561 1.8e-41 138.8 61.7 4 8 0.00022 0.21 12.1 6.2 1 23 428 450 428 451 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF394-201 - 561 1.8e-41 138.8 61.7 5 8 8.3e-11 7.9e-08 32.4 2.4 1 26 455 480 455 480 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF394-201 - 561 1.8e-41 138.8 61.7 6 8 7e-09 6.6e-06 26.3 1.4 2 25 484 507 483 508 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF394-201 - 561 1.8e-41 138.8 61.7 7 8 2.3e-09 2.1e-06 27.9 0.6 2 25 512 535 511 536 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF394-201 - 561 1.8e-41 138.8 61.7 8 8 0.95 9e+02 0.6 1.5 1 11 539 549 539 550 0.84 Zinc-finger double domain SCAN PF02023.17 90 ZNF394-201 - 561 3e-40 135.9 2.8 1 1 8.1e-43 7.7e-40 134.6 2.8 1 87 60 146 60 149 0.98 SCAN domain zf-C2H2 PF00096.26 23 ZNF394-201 - 561 4.8e-37 124.4 65.7 1 8 9.2 8.6e+03 -2.4 0.4 5 20 316 328 315 332 0.57 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF394-201 - 561 4.8e-37 124.4 65.7 2 8 3.6e-10 3.4e-07 30.4 1.8 1 23 358 380 358 380 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF394-201 - 561 4.8e-37 124.4 65.7 3 8 9.1e-09 8.6e-06 25.9 0.4 3 23 388 408 386 408 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF394-201 - 561 4.8e-37 124.4 65.7 4 8 6.1e-08 5.7e-05 23.3 3.9 1 23 414 436 414 436 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF394-201 - 561 4.8e-37 124.4 65.7 5 8 7.7e-05 0.072 13.6 4.2 1 23 442 463 442 463 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF394-201 - 561 4.8e-37 124.4 65.7 6 8 2.6e-08 2.5e-05 24.5 3.9 1 23 469 491 469 491 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF394-201 - 561 4.8e-37 124.4 65.7 7 8 2.2e-07 0.0002 21.6 0.3 3 23 499 519 497 519 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF394-201 - 561 4.8e-37 124.4 65.7 8 8 5.6e-08 5.3e-05 23.5 2.2 1 23 525 547 525 547 0.99 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZNF394-201 - 561 1.3e-17 63.0 62.1 1 8 9.1 8.6e+03 -1.8 0.7 6 24 317 327 315 332 0.50 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF394-201 - 561 1.3e-17 63.0 62.1 2 8 7.1e-06 0.0067 17.2 1.1 1 23 358 380 358 381 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF394-201 - 561 1.3e-17 63.0 62.1 3 8 5e-06 0.0047 17.7 0.5 2 23 387 408 386 409 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF394-201 - 561 1.3e-17 63.0 62.1 4 8 7.2e-05 0.068 14.0 2.6 1 23 414 436 414 437 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF394-201 - 561 1.3e-17 63.0 62.1 5 8 0.029 27 5.9 4.1 1 23 442 463 442 464 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF394-201 - 561 1.3e-17 63.0 62.1 6 8 4.2e-05 0.039 14.8 3.1 1 23 469 491 469 492 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF394-201 - 561 1.3e-17 63.0 62.1 7 8 2e-05 0.019 15.8 0.3 2 23 498 519 497 520 0.91 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF394-201 - 561 1.3e-17 63.0 62.1 8 8 3.2e-05 0.03 15.1 1.5 1 23 525 547 525 548 0.96 C2H2-type zinc finger KRAB PF01352.27 42 ZNF394-201 - 561 1.6e-10 40.5 0.6 1 2 4.2e-13 3.9e-10 39.2 0.1 1 30 154 183 154 191 0.93 KRAB box KRAB PF01352.27 42 ZNF394-201 - 561 1.6e-10 40.5 0.6 2 2 5.6 5.3e+03 -2.8 0.0 19 28 345 354 344 355 0.79 KRAB box # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF394-201.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF394-201.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF394-201.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF394-201.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF394-201.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:05:19 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF394-202.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF394-202.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF394-202.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF394-202.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF394-202.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:05:20 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZNF394-203 - 354 2.2e-43 144.8 61.7 1 8 3.9e-05 0.031 14.7 0.6 10 26 146 162 133 162 0.89 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF394-203 - 354 2.2e-43 144.8 61.7 2 8 2.8e-10 2.2e-07 31.0 0.2 2 25 166 189 165 190 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF394-203 - 354 2.2e-43 144.8 61.7 3 8 1.3e-10 1e-07 32.1 1.2 1 25 193 217 193 218 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF394-203 - 354 2.2e-43 144.8 61.7 4 8 0.00015 0.12 12.9 6.2 1 23 221 243 221 244 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF394-203 - 354 2.2e-43 144.8 61.7 5 8 5.7e-11 4.5e-08 33.2 2.4 1 26 248 273 248 273 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF394-203 - 354 2.2e-43 144.8 61.7 6 8 4.8e-09 3.8e-06 27.1 1.4 2 25 277 300 276 301 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF394-203 - 354 2.2e-43 144.8 61.7 7 8 1.6e-09 1.2e-06 28.6 0.6 2 25 305 328 304 329 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF394-203 - 354 2.2e-43 144.8 61.7 8 8 0.68 5.3e+02 1.3 1.5 1 11 332 342 332 343 0.84 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZNF394-203 - 354 7.9e-39 130.0 65.7 1 8 6.5 5.1e+03 -1.7 0.4 5 20 109 121 108 125 0.57 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF394-203 - 354 7.9e-39 130.0 65.7 2 8 2.5e-10 1.9e-07 31.1 1.8 1 23 151 173 151 173 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF394-203 - 354 7.9e-39 130.0 65.7 3 8 6.3e-09 4.9e-06 26.7 0.4 3 23 181 201 179 201 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF394-203 - 354 7.9e-39 130.0 65.7 4 8 4.2e-08 3.3e-05 24.1 3.9 1 23 207 229 207 229 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF394-203 - 354 7.9e-39 130.0 65.7 5 8 5.3e-05 0.041 14.3 4.2 1 23 235 256 235 256 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF394-203 - 354 7.9e-39 130.0 65.7 6 8 1.8e-08 1.4e-05 25.3 3.9 1 23 262 284 262 284 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF394-203 - 354 7.9e-39 130.0 65.7 7 8 1.5e-07 0.00012 22.4 0.3 3 23 292 312 290 312 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF394-203 - 354 7.9e-39 130.0 65.7 8 8 3.9e-08 3e-05 24.2 2.2 1 23 318 340 318 340 0.99 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZNF394-203 - 354 2.1e-19 68.5 62.1 1 8 6.4 5e+03 -1.1 0.7 6 24 110 120 108 125 0.50 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF394-203 - 354 2.1e-19 68.5 62.1 2 8 4.9e-06 0.0038 17.9 1.1 1 23 151 173 151 174 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF394-203 - 354 2.1e-19 68.5 62.1 3 8 3.4e-06 0.0027 18.4 0.5 2 23 180 201 179 202 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF394-203 - 354 2.1e-19 68.5 62.1 4 8 4.9e-05 0.038 14.8 2.6 1 23 207 229 207 230 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF394-203 - 354 2.1e-19 68.5 62.1 5 8 0.02 15 6.7 4.1 1 23 235 256 235 257 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF394-203 - 354 2.1e-19 68.5 62.1 6 8 2.9e-05 0.022 15.6 3.1 1 23 262 284 262 285 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF394-203 - 354 2.1e-19 68.5 62.1 7 8 1.4e-05 0.011 16.5 0.3 2 23 291 312 290 313 0.91 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF394-203 - 354 2.1e-19 68.5 62.1 8 8 2.2e-05 0.017 15.9 1.5 1 23 318 340 318 341 0.96 C2H2-type zinc finger Zn-ribbon_8 PF09723.10 40 ZNF394-203 - 354 3e-07 30.5 37.9 1 7 2.3 1.8e+03 -0.9 0.0 10 19 27 36 16 45 0.69 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF394-203 - 354 3e-07 30.5 37.9 2 7 4.4e-06 0.0034 17.5 2.6 6 35 151 187 150 191 0.93 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF394-203 - 354 3e-07 30.5 37.9 3 7 8.9e-05 0.07 13.3 2.8 6 37 179 217 178 219 0.89 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF394-203 - 354 3e-07 30.5 37.9 4 7 0.0038 3 8.1 6.8 6 35 207 243 205 246 0.87 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF394-203 - 354 3e-07 30.5 37.9 5 7 0.00061 0.48 10.6 4.9 6 35 262 298 261 301 0.92 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF394-203 - 354 3e-07 30.5 37.9 6 7 0.0001 0.078 13.1 2.4 6 37 290 328 289 330 0.91 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF394-203 - 354 3e-07 30.5 37.9 7 7 0.0037 2.9 8.1 0.4 6 16 318 328 317 343 0.80 Zinc ribbon domain zf-C2H2_8 PF15909.5 98 ZNF394-203 - 354 7.5e-07 29.4 33.1 1 4 0.0029 2.3 8.6 1.8 57 88 141 172 85 178 0.73 C2H2-type zinc ribbon zf-C2H2_8 PF15909.5 98 ZNF394-203 - 354 7.5e-07 29.4 33.1 2 4 0.018 14 6.0 2.5 41 89 182 229 174 235 0.81 C2H2-type zinc ribbon zf-C2H2_8 PF15909.5 98 ZNF394-203 - 354 7.5e-07 29.4 33.1 3 4 6.9e-06 0.0054 17.0 9.9 22 88 219 283 215 290 0.82 C2H2-type zinc ribbon zf-C2H2_8 PF15909.5 98 ZNF394-203 - 354 7.5e-07 29.4 33.1 4 4 0.00011 0.087 13.1 2.1 36 92 290 343 281 348 0.82 C2H2-type zinc ribbon # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF394-203.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF394-203.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF394-203.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF394-203.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF394-203.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:05:20 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF394-204.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF394-204.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF394-204.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF394-204.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF394-204.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:05:20 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- KRAB PF01352.27 42 ZNF394-205 - 64 7.6e-12 44.7 0.2 1 1 5.2e-16 9.4e-12 44.4 0.2 1 31 1 31 1 39 0.91 KRAB box # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF394-205.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF394-205.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF394-205.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF394-205.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF394-205.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:05:21 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- SCAN PF02023.17 90 ZNF394-206 - 217 8.4e-41 137.7 2.8 1 1 3e-44 1.3e-40 137.1 2.8 1 87 60 146 60 149 0.98 SCAN domain KRAB PF01352.27 42 ZNF394-206 - 217 5.3e-11 42.0 0.1 1 1 2.5e-14 1.1e-10 41.0 0.1 1 30 154 183 154 191 0.93 KRAB box # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF394-206.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF394-206.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF394-206.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF394-206.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF394-206.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:05:21 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- SCAN PF02023.17 90 ZNF394-207 - 217 8.4e-41 137.7 2.8 1 1 3e-44 1.3e-40 137.1 2.8 1 87 60 146 60 149 0.98 SCAN domain KRAB PF01352.27 42 ZNF394-207 - 217 5.3e-11 42.0 0.1 1 1 2.5e-14 1.1e-10 41.0 0.1 1 30 154 183 154 191 0.93 KRAB box # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF394-207.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF394-207.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF394-207.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF394-207.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF394-207.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:05:21 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- SCAN PF02023.17 90 ZNF397-201 - 275 1.5e-42 143.3 5.4 1 1 1.4e-46 2.6e-42 142.6 5.4 1 89 46 134 46 135 0.98 SCAN domain # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF397-201.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF397-201.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF397-201.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF397-201.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF397-201.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:05:22 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZNF397-202 - 534 2.1e-67 220.8 47.5 1 10 0.00083 0.44 11.1 0.4 12 26 282 296 276 296 0.89 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF397-202 - 534 2.1e-67 220.8 47.5 2 10 2.3e-11 1.2e-08 35.0 0.4 1 25 299 323 299 323 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF397-202 - 534 2.1e-67 220.8 47.5 3 10 5.3e-09 2.8e-06 27.5 0.1 5 25 331 351 327 352 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF397-202 - 534 2.1e-67 220.8 47.5 4 10 6.9e-08 3.7e-05 24.0 0.8 1 25 355 379 355 380 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF397-202 - 534 2.1e-67 220.8 47.5 5 10 9e-11 4.7e-08 33.1 0.2 5 25 387 407 383 408 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF397-202 - 534 2.1e-67 220.8 47.5 6 10 3.2e-11 1.7e-08 34.5 0.3 2 25 412 435 411 436 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF397-202 - 534 2.1e-67 220.8 47.5 7 10 2.2e-10 1.2e-07 31.8 0.2 2 25 440 463 439 463 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF397-202 - 534 2.1e-67 220.8 47.5 8 10 1.1e-10 5.7e-08 32.8 0.3 1 26 467 492 467 492 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF397-202 - 534 2.1e-67 220.8 47.5 9 10 1.7e-05 0.0089 16.4 0.1 1 26 495 520 495 520 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF397-202 - 534 2.1e-67 220.8 47.5 10 10 0.078 41 4.8 0.5 2 10 524 532 523 534 0.91 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZNF397-202 - 534 1.5e-60 198.4 59.4 1 9 1.4e-07 7.5e-05 23.0 4.6 1 23 285 307 285 307 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF397-202 - 534 1.5e-60 198.4 59.4 2 9 1.4e-07 7.3e-05 23.0 0.5 1 23 313 335 313 335 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF397-202 - 534 1.5e-60 198.4 59.4 3 9 2e-08 1.1e-05 25.6 0.2 1 23 341 363 341 363 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF397-202 - 534 1.5e-60 198.4 59.4 4 9 3.9e-08 2.1e-05 24.7 1.2 2 23 370 391 369 391 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF397-202 - 534 1.5e-60 198.4 59.4 5 9 1.4e-09 7.3e-07 29.3 0.8 1 23 397 419 397 419 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF397-202 - 534 1.5e-60 198.4 59.4 6 9 3.8e-09 2e-06 27.9 0.2 1 23 425 447 425 447 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF397-202 - 534 1.5e-60 198.4 59.4 7 9 9.1e-09 4.8e-06 26.7 0.2 1 23 453 475 453 475 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF397-202 - 534 1.5e-60 198.4 59.4 8 9 4.6e-10 2.4e-07 30.8 0.6 1 23 481 503 481 503 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF397-202 - 534 1.5e-60 198.4 59.4 9 9 5.7e-08 3e-05 24.2 1.6 1 23 509 531 509 531 0.98 Zinc finger, C2H2 type SCAN PF02023.17 90 ZNF397-202 - 534 3.2e-42 142.2 5.4 1 1 1.6e-44 8.3e-42 140.9 5.4 1 89 46 134 46 135 0.98 SCAN domain zf-C2H2_4 PF13894.6 24 ZNF397-202 - 534 9.6e-31 103.8 57.7 1 9 0.00036 0.19 12.7 3.4 1 23 285 307 285 308 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF397-202 - 534 9.6e-31 103.8 57.7 2 9 0.00013 0.071 14.0 0.4 1 23 313 335 313 336 0.88 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF397-202 - 534 9.6e-31 103.8 57.7 3 9 5.5e-06 0.0029 18.3 0.2 1 23 341 363 341 364 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF397-202 - 534 9.6e-31 103.8 57.7 4 9 0.00059 0.31 12.0 1.2 2 23 370 391 369 392 0.90 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF397-202 - 534 9.6e-31 103.8 57.7 5 9 2.6e-06 0.0014 19.3 0.6 1 23 397 419 397 420 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF397-202 - 534 9.6e-31 103.8 57.7 6 9 3e-05 0.016 16.0 0.2 1 23 425 447 425 448 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF397-202 - 534 9.6e-31 103.8 57.7 7 9 1.5e-05 0.0079 16.9 0.3 1 23 453 475 453 476 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF397-202 - 534 9.6e-31 103.8 57.7 8 9 2.3e-06 0.0012 19.5 0.6 1 23 481 503 481 504 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF397-202 - 534 9.6e-31 103.8 57.7 9 9 0.00059 0.31 12.0 1.2 1 23 509 531 509 532 0.88 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF397-202 - 534 7.6e-19 67.2 56.1 1 9 0.0051 2.7 8.1 2.8 2 22 285 305 285 309 0.86 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF397-202 - 534 7.6e-19 67.2 56.1 2 9 0.0064 3.4 7.8 0.8 2 12 313 323 313 323 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF397-202 - 534 7.6e-19 67.2 56.1 3 9 1.8e-06 0.00093 19.1 0.3 1 24 340 363 340 366 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF397-202 - 534 7.6e-19 67.2 56.1 4 9 0.029 15 5.7 0.9 3 12 370 379 370 380 0.92 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF397-202 - 534 7.6e-19 67.2 56.1 5 9 0.00031 0.16 12.0 0.4 2 12 397 407 397 419 0.88 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF397-202 - 534 7.6e-19 67.2 56.1 6 9 6.3e-05 0.033 14.2 0.4 2 24 425 447 425 450 0.90 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF397-202 - 534 7.6e-19 67.2 56.1 7 9 0.0003 0.16 12.0 0.3 2 22 453 473 453 478 0.78 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF397-202 - 534 7.6e-19 67.2 56.1 8 9 0.00019 0.098 12.7 0.9 2 24 481 503 481 505 0.86 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF397-202 - 534 7.6e-19 67.2 56.1 9 9 0.00059 0.31 11.1 0.4 1 20 508 527 508 532 0.79 C2H2-type zinc finger Zn-ribbon_8 PF09723.10 40 ZNF397-202 - 534 1.7e-14 53.6 42.2 1 8 1.4e-05 0.0076 16.3 2.9 6 34 285 320 284 325 0.91 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF397-202 - 534 1.7e-14 53.6 42.2 2 8 0.0056 2.9 8.1 0.2 6 17 313 324 312 335 0.85 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF397-202 - 534 1.7e-14 53.6 42.2 3 8 5.4e-05 0.028 14.5 3.7 6 35 341 377 340 382 0.87 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF397-202 - 534 1.7e-14 53.6 42.2 4 8 1.6e-05 0.0085 16.2 4.5 6 37 397 435 396 437 0.91 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF397-202 - 534 1.7e-14 53.6 42.2 5 8 0.00039 0.2 11.8 5.7 6 34 425 460 424 463 0.91 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF397-202 - 534 1.7e-14 53.6 42.2 6 8 5.3e-06 0.0028 17.7 3.6 6 38 453 492 451 493 0.93 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF397-202 - 534 1.7e-14 53.6 42.2 7 8 7.5e-06 0.004 17.3 2.6 6 37 481 519 480 521 0.90 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF397-202 - 534 1.7e-14 53.6 42.2 8 8 0.029 15 5.8 0.2 6 17 509 520 508 527 0.82 Zinc ribbon domain XPA_N PF01286.18 32 ZNF397-202 - 534 2.5e-12 46.6 32.5 1 9 0.57 3e+02 1.6 0.1 3 12 286 295 284 301 0.83 XPA protein N-terminal XPA_N PF01286.18 32 ZNF397-202 - 534 2.5e-12 46.6 32.5 2 9 0.026 14 5.8 0.0 3 16 314 328 312 331 0.81 XPA protein N-terminal XPA_N PF01286.18 32 ZNF397-202 - 534 2.5e-12 46.6 32.5 3 9 0.0052 2.7 8.1 0.2 3 14 342 353 340 356 0.91 XPA protein N-terminal XPA_N PF01286.18 32 ZNF397-202 - 534 2.5e-12 46.6 32.5 4 9 0.00096 0.51 10.4 0.7 3 17 370 384 368 386 0.87 XPA protein N-terminal XPA_N PF01286.18 32 ZNF397-202 - 534 2.5e-12 46.6 32.5 5 9 0.0025 1.3 9.1 0.2 3 14 398 409 396 415 0.87 XPA protein N-terminal XPA_N PF01286.18 32 ZNF397-202 - 534 2.5e-12 46.6 32.5 6 9 0.0057 3 8.0 0.2 3 14 426 437 424 440 0.92 XPA protein N-terminal XPA_N PF01286.18 32 ZNF397-202 - 534 2.5e-12 46.6 32.5 7 9 0.013 7.1 6.8 0.2 3 14 454 465 452 468 0.89 XPA protein N-terminal XPA_N PF01286.18 32 ZNF397-202 - 534 2.5e-12 46.6 32.5 8 9 0.0067 3.5 7.7 0.1 3 14 482 493 480 497 0.91 XPA protein N-terminal XPA_N PF01286.18 32 ZNF397-202 - 534 2.5e-12 46.6 32.5 9 9 0.022 12 6.1 0.0 3 12 510 519 508 528 0.75 XPA protein N-terminal zf_UBZ PF18439.1 32 ZNF397-202 - 534 3.1e-09 36.2 36.9 1 9 0.0096 5 6.8 0.6 3 21 285 304 283 304 0.93 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF397-202 - 534 3.1e-09 36.2 36.9 2 9 0.05 26 4.5 0.1 3 13 313 323 311 327 0.86 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF397-202 - 534 3.1e-09 36.2 36.9 3 9 0.0064 3.4 7.3 0.1 3 15 341 353 339 360 0.81 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF397-202 - 534 3.1e-09 36.2 36.9 4 9 0.14 72 3.1 0.4 4 15 370 381 368 384 0.86 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF397-202 - 534 3.1e-09 36.2 36.9 5 9 0.0037 1.9 8.1 0.2 3 17 397 412 395 416 0.81 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF397-202 - 534 3.1e-09 36.2 36.9 6 9 0.0086 4.5 6.9 0.2 3 21 425 444 423 444 0.91 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF397-202 - 534 3.1e-09 36.2 36.9 7 9 0.004 2.1 8.0 0.1 3 15 453 465 451 472 0.80 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF397-202 - 534 3.1e-09 36.2 36.9 8 9 0.0031 1.7 8.3 0.2 2 21 480 500 479 500 0.85 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF397-202 - 534 3.1e-09 36.2 36.9 9 9 0.037 19 4.9 0.1 2 12 508 518 507 524 0.84 Ubiquitin-Binding Zinc Finger zf-C2H2_11 PF16622.5 29 ZNF397-202 - 534 1.2e-08 34.5 43.8 1 9 0.023 12 5.8 1.2 5 26 285 306 281 307 0.93 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF397-202 - 534 1.2e-08 34.5 43.8 2 9 0.052 27 4.6 0.2 5 17 313 325 310 335 0.77 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF397-202 - 534 1.2e-08 34.5 43.8 3 9 0.00066 0.35 10.7 0.1 4 26 340 362 338 363 0.92 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF397-202 - 534 1.2e-08 34.5 43.8 4 9 0.0033 1.7 8.4 1.1 3 23 367 387 366 391 0.76 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF397-202 - 534 1.2e-08 34.5 43.8 5 9 0.0017 0.89 9.4 0.3 6 26 398 418 395 419 0.93 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF397-202 - 534 1.2e-08 34.5 43.8 6 9 0.95 5e+02 0.6 0.1 6 14 426 434 424 446 0.75 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF397-202 - 534 1.2e-08 34.5 43.8 7 9 0.0013 0.71 9.7 0.4 6 26 454 474 451 475 0.93 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF397-202 - 534 1.2e-08 34.5 43.8 8 9 0.005 2.7 7.9 0.1 5 26 481 502 478 503 0.90 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF397-202 - 534 1.2e-08 34.5 43.8 9 9 0.096 51 3.8 0.2 6 25 510 529 506 531 0.86 zinc-finger C2H2-type zf-C2H2_jaz PF12171.8 27 ZNF397-202 - 534 3.2e-07 30.5 33.4 1 9 0.048 25 5.3 0.4 2 22 285 305 284 305 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF397-202 - 534 3.2e-07 30.5 33.4 2 9 6.3 3.3e+03 -1.5 0.4 2 12 313 323 312 323 0.86 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF397-202 - 534 3.2e-07 30.5 33.4 3 9 0.0078 4.1 7.8 0.1 2 22 341 361 340 361 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF397-202 - 534 3.2e-07 30.5 33.4 4 9 2.8 1.5e+03 -0.3 0.3 4 20 371 387 370 389 0.75 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF397-202 - 534 3.2e-07 30.5 33.4 5 9 0.014 7.2 7.0 0.1 2 21 397 416 396 417 0.89 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF397-202 - 534 3.2e-07 30.5 33.4 6 9 0.061 32 5.0 0.1 2 22 425 445 424 445 0.91 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF397-202 - 534 3.2e-07 30.5 33.4 7 9 0.086 45 4.5 0.0 2 21 453 472 452 473 0.87 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF397-202 - 534 3.2e-07 30.5 33.4 8 9 8.6e-05 0.045 14.0 0.1 4 22 483 501 480 501 0.91 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF397-202 - 534 3.2e-07 30.5 33.4 9 9 0.019 9.9 6.6 0.1 2 22 509 529 508 529 0.93 Zinc-finger double-stranded RNA-binding zf_C2H2_13 PF18508.1 42 ZNF397-202 - 534 9.9e-07 28.3 20.5 1 9 7.8 4.1e+03 -2.5 0.1 18 25 286 292 283 303 0.81 Zinc finger domain zf_C2H2_13 PF18508.1 42 ZNF397-202 - 534 9.9e-07 28.3 20.5 2 9 0.011 6 6.5 0.0 20 31 315 326 313 335 0.83 Zinc finger domain zf_C2H2_13 PF18508.1 42 ZNF397-202 - 534 9.9e-07 28.3 20.5 3 9 0.36 1.9e+02 1.7 0.1 20 39 343 363 342 365 0.77 Zinc finger domain zf_C2H2_13 PF18508.1 42 ZNF397-202 - 534 9.9e-07 28.3 20.5 4 9 0.089 47 3.7 0.1 20 29 371 380 370 391 0.79 Zinc finger domain zf_C2H2_13 PF18508.1 42 ZNF397-202 - 534 9.9e-07 28.3 20.5 5 9 0.071 37 4.0 0.1 20 30 399 409 398 420 0.72 Zinc finger domain zf_C2H2_13 PF18508.1 42 ZNF397-202 - 534 9.9e-07 28.3 20.5 6 9 0.13 66 3.2 0.0 20 27 427 434 426 448 0.74 Zinc finger domain zf_C2H2_13 PF18508.1 42 ZNF397-202 - 534 9.9e-07 28.3 20.5 7 9 0.12 62 3.3 0.1 20 35 455 471 454 476 0.78 Zinc finger domain zf_C2H2_13 PF18508.1 42 ZNF397-202 - 534 9.9e-07 28.3 20.5 8 9 0.014 7.4 6.3 0.0 20 39 483 503 481 505 0.82 Zinc finger domain zf_C2H2_13 PF18508.1 42 ZNF397-202 - 534 9.9e-07 28.3 20.5 9 9 0.015 8.1 6.1 0.0 19 29 510 520 508 531 0.74 Zinc finger domain # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF397-202.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF397-202.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF397-202.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF397-202.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF397-202.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:05:22 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- SCAN PF02023.17 90 ZNF397-203 - 245 1.4e-42 143.4 5.4 1 1 1.1e-46 2e-42 142.9 5.4 1 89 46 134 46 135 0.98 SCAN domain # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF397-203.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF397-203.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF397-203.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF397-203.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF397-203.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:05:23 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- SCAN PF02023.17 90 ZNF397-204 - 207 8.2e-43 144.1 5.4 1 1 7.7e-47 1.4e-42 143.4 5.4 1 89 46 134 46 135 0.98 SCAN domain # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF397-204.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF397-204.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF397-204.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF397-204.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF397-204.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:05:23 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF397-205.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF397-205.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF397-205.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF397-205.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF397-205.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:05:23 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF397-206.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF397-206.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF397-206.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF397-206.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF397-206.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:05:24 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- SCAN PF02023.17 90 ZNF397-207 - 159 5.3e-43 144.7 5.4 1 1 4e-47 7.1e-43 144.3 5.4 1 89 46 134 46 135 0.98 SCAN domain # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF397-207.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF397-207.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF397-207.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF397-207.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF397-207.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:05:24 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF397-208.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF397-208.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF397-208.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF397-208.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF397-208.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:05:24 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- SCAN PF02023.17 90 ZNF397-209 - 207 8.2e-43 144.1 5.4 1 1 7.7e-47 1.4e-42 143.4 5.4 1 89 46 134 46 135 0.98 SCAN domain # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF397-209.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF397-209.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF397-209.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF397-209.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF397-209.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:05:25 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF397-210.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF397-210.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF397-210.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF397-210.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF397-210.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:05:25 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- SCAN PF02023.17 90 ZNF397-211 - 188 7.6e-43 144.2 5.4 1 1 6.1e-47 1.1e-42 143.7 5.4 1 89 46 134 46 135 0.98 SCAN domain # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF397-211.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF397-211.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF397-211.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF397-211.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF397-211.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:05:25 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF397-212.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF397-212.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF397-212.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF397-212.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF397-212.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:05:26 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-C2H2 PF00096.26 23 ZNF398-201 - 471 3.5e-36 121.6 77.1 1 9 0.0028 1.7 9.2 7.1 1 23 172 193 172 193 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF398-201 - 471 3.5e-36 121.6 77.1 2 9 0.032 20 5.9 0.1 2 17 200 215 199 216 0.88 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF398-201 - 471 3.5e-36 121.6 77.1 3 9 1.4e-05 0.0088 16.5 4.5 2 23 228 249 228 249 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF398-201 - 471 3.5e-36 121.6 77.1 4 9 2e-07 0.00012 22.3 0.2 1 23 256 278 256 278 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF398-201 - 471 3.5e-36 121.6 77.1 5 9 9.3e-06 0.0057 17.0 0.4 1 23 284 306 284 306 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF398-201 - 471 3.5e-36 121.6 77.1 6 9 5.7e-06 0.0035 17.7 0.2 1 23 312 334 312 334 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF398-201 - 471 3.5e-36 121.6 77.1 7 9 1.6e-07 0.0001 22.6 3.7 1 23 340 362 340 362 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF398-201 - 471 3.5e-36 121.6 77.1 8 9 1.6e-08 9.6e-06 25.8 7.4 1 23 368 390 368 390 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF398-201 - 471 3.5e-36 121.6 77.1 9 9 5e-08 3.1e-05 24.2 1.7 1 23 396 419 396 419 0.98 Zinc finger, C2H2 type zf-H2C2_2 PF13465.6 26 ZNF398-201 - 471 7.6e-36 121.0 60.9 1 10 1.2 7.4e+02 0.9 0.1 11 23 168 180 167 183 0.81 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF398-201 - 471 7.6e-36 121.0 60.9 2 10 0.38 2.4e+02 2.4 3.5 8 25 192 209 186 209 0.83 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF398-201 - 471 7.6e-36 121.0 60.9 3 10 0.0033 2.1 9.0 1.7 8 26 220 238 218 238 0.89 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF398-201 - 471 7.6e-36 121.0 60.9 4 10 2.8e-08 1.8e-05 25.0 0.8 2 25 242 266 241 267 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF398-201 - 471 7.6e-36 121.0 60.9 5 10 2.9e-05 0.018 15.4 0.3 2 25 271 294 270 294 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF398-201 - 471 7.6e-36 121.0 60.9 6 10 2.3e-05 0.014 15.8 0.0 2 22 299 319 298 322 0.85 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF398-201 - 471 7.6e-36 121.0 60.9 7 10 7.5e-09 4.6e-06 26.8 0.2 1 24 326 349 326 349 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF398-201 - 471 7.6e-36 121.0 60.9 8 10 1.9e-09 1.2e-06 28.7 2.5 1 24 354 377 354 379 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF398-201 - 471 7.6e-36 121.0 60.9 9 10 1.8e-10 1.1e-07 31.9 2.3 1 25 382 406 382 407 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF398-201 - 471 7.6e-36 121.0 60.9 10 10 4.4 2.7e+03 -0.9 0.1 2 11 411 421 411 422 0.85 Zinc-finger double domain zf-C2H2_4 PF13894.6 24 ZNF398-201 - 471 2.7e-24 83.8 68.7 1 9 0.053 33 5.7 4.9 1 19 172 189 172 193 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF398-201 - 471 2.7e-24 83.8 68.7 2 9 0.38 2.4e+02 3.0 0.1 2 14 200 211 199 216 0.76 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF398-201 - 471 2.7e-24 83.8 68.7 3 9 0.00016 0.099 13.5 2.3 2 23 228 249 227 250 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF398-201 - 471 2.7e-24 83.8 68.7 4 9 3.7e-06 0.0023 18.6 0.1 1 23 256 278 256 279 0.97 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF398-201 - 471 2.7e-24 83.8 68.7 5 9 0.00053 0.33 11.9 0.3 1 23 284 306 284 307 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF398-201 - 471 2.7e-24 83.8 68.7 6 9 5.1e-05 0.031 15.1 0.2 1 23 312 334 312 335 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF398-201 - 471 2.7e-24 83.8 68.7 7 9 6.6e-06 0.0041 17.8 2.4 1 23 340 362 340 363 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF398-201 - 471 2.7e-24 83.8 68.7 8 9 1.4e-05 0.0085 16.8 5.7 1 23 368 390 368 391 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF398-201 - 471 2.7e-24 83.8 68.7 9 9 1.4e-06 0.00084 20.0 1.1 1 22 396 417 396 419 0.94 C2H2-type zinc finger zf-C2H2_jaz PF12171.8 27 ZNF398-201 - 471 5.4e-15 55.2 15.2 1 9 0.6 3.7e+02 1.6 0.1 2 10 172 180 171 187 0.86 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF398-201 - 471 5.4e-15 55.2 15.2 2 9 1.7 1.1e+03 0.1 0.0 4 11 201 208 198 213 0.89 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF398-201 - 471 5.4e-15 55.2 15.2 3 9 0.0027 1.7 9.1 0.0 3 22 228 247 226 247 0.89 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF398-201 - 471 5.4e-15 55.2 15.2 4 9 0.0077 4.7 7.6 0.0 2 21 256 275 255 276 0.91 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF398-201 - 471 5.4e-15 55.2 15.2 5 9 0.16 97 3.4 0.0 2 24 284 306 283 307 0.89 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF398-201 - 471 5.4e-15 55.2 15.2 6 9 0.011 6.8 7.1 0.0 2 20 312 330 311 331 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF398-201 - 471 5.4e-15 55.2 15.2 7 9 0.076 47 4.4 0.1 2 21 340 359 339 360 0.88 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF398-201 - 471 5.4e-15 55.2 15.2 8 9 0.00017 0.11 12.8 0.6 2 22 368 388 367 388 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF398-201 - 471 5.4e-15 55.2 15.2 9 9 0.0014 0.87 10.0 0.1 2 23 396 417 395 420 0.92 Zinc-finger double-stranded RNA-binding # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF398-201.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF398-201.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF398-201.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF398-201.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF398-201.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:05:26 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-C2H2 PF00096.26 23 ZNF398-202 - 642 8.1e-35 117.4 77.1 1 9 0.0039 2.5 8.7 7.1 1 23 343 364 343 364 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF398-202 - 642 8.1e-35 117.4 77.1 2 9 0.044 28 5.4 0.1 2 17 371 386 370 387 0.88 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF398-202 - 642 8.1e-35 117.4 77.1 3 9 2e-05 0.013 16.0 4.5 2 23 399 420 399 420 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF398-202 - 642 8.1e-35 117.4 77.1 4 9 2.8e-07 0.00018 21.8 0.2 1 23 427 449 427 449 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF398-202 - 642 8.1e-35 117.4 77.1 5 9 1.3e-05 0.0083 16.5 0.4 1 23 455 477 455 477 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF398-202 - 642 8.1e-35 117.4 77.1 6 9 7.9e-06 0.0051 17.2 0.2 1 23 483 505 483 505 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF398-202 - 642 8.1e-35 117.4 77.1 7 9 2.3e-07 0.00014 22.1 3.7 1 23 511 533 511 533 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF398-202 - 642 8.1e-35 117.4 77.1 8 9 2.2e-08 1.4e-05 25.3 7.4 1 23 539 561 539 561 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF398-202 - 642 8.1e-35 117.4 77.1 9 9 7e-08 4.5e-05 23.7 1.7 1 23 567 590 567 590 0.98 Zinc finger, C2H2 type zf-H2C2_2 PF13465.6 26 ZNF398-202 - 642 2.1e-34 116.4 60.9 1 10 1.6 1.1e+03 0.4 0.1 11 23 339 351 338 354 0.81 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF398-202 - 642 2.1e-34 116.4 60.9 2 10 0.53 3.4e+02 1.9 3.5 8 25 363 380 357 380 0.83 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF398-202 - 642 2.1e-34 116.4 60.9 3 10 0.0046 2.9 8.5 1.7 8 26 391 409 389 409 0.89 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF398-202 - 642 2.1e-34 116.4 60.9 4 10 4e-08 2.6e-05 24.5 0.8 2 25 413 437 412 438 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF398-202 - 642 2.1e-34 116.4 60.9 5 10 4.1e-05 0.026 14.9 0.3 2 25 442 465 441 465 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF398-202 - 642 2.1e-34 116.4 60.9 6 10 3.2e-05 0.021 15.3 0.0 2 22 470 490 469 493 0.85 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF398-202 - 642 2.1e-34 116.4 60.9 7 10 1e-08 6.7e-06 26.3 0.2 1 24 497 520 497 520 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF398-202 - 642 2.1e-34 116.4 60.9 8 10 2.7e-09 1.7e-06 28.2 2.5 1 24 525 548 525 550 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF398-202 - 642 2.1e-34 116.4 60.9 9 10 2.5e-10 1.6e-07 31.4 2.3 1 25 553 577 553 578 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF398-202 - 642 2.1e-34 116.4 60.9 10 10 6 3.8e+03 -1.4 0.1 2 11 582 592 582 593 0.85 Zinc-finger double domain zf-C2H2_4 PF13894.6 24 ZNF398-202 - 642 1.6e-23 81.4 66.8 1 9 0.074 48 5.2 4.9 1 19 343 360 343 364 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF398-202 - 642 1.6e-23 81.4 66.8 2 9 0.53 3.4e+02 2.5 0.1 2 14 371 382 370 387 0.76 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF398-202 - 642 1.6e-23 81.4 66.8 3 9 0.00022 0.14 13.0 2.3 2 23 399 420 398 421 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF398-202 - 642 1.6e-23 81.4 66.8 4 9 5.2e-06 0.0033 18.1 0.1 1 23 427 449 427 450 0.97 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF398-202 - 642 1.6e-23 81.4 66.8 5 9 0.00075 0.48 11.4 0.3 1 23 455 477 455 478 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF398-202 - 642 1.6e-23 81.4 66.8 6 9 7.1e-05 0.046 14.6 0.2 1 23 483 505 483 506 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF398-202 - 642 1.6e-23 81.4 66.8 7 9 9.3e-06 0.0059 17.3 2.4 1 23 511 533 511 534 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF398-202 - 642 1.6e-23 81.4 66.8 8 9 1.9e-05 0.012 16.3 5.7 1 23 539 561 539 562 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF398-202 - 642 1.6e-23 81.4 66.8 9 9 1.9e-06 0.0012 19.5 1.1 1 22 567 588 567 590 0.94 C2H2-type zinc finger KRAB PF01352.27 42 ZNF398-202 - 642 2.4e-16 59.1 0.8 1 1 6e-19 3.8e-16 58.4 0.0 1 42 142 183 142 183 0.98 KRAB box zf-C2H2_jaz PF12171.8 27 ZNF398-202 - 642 1.6e-13 50.5 15.8 1 9 0.82 5.2e+02 1.1 0.1 2 10 343 351 342 358 0.86 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF398-202 - 642 1.6e-13 50.5 15.8 2 9 2.8 1.8e+03 -0.6 0.1 4 11 372 379 370 384 0.90 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF398-202 - 642 1.6e-13 50.5 15.8 3 9 0.0037 2.4 8.6 0.0 3 22 399 418 397 418 0.89 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF398-202 - 642 1.6e-13 50.5 15.8 4 9 0.011 6.8 7.1 0.0 2 21 427 446 426 447 0.91 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF398-202 - 642 1.6e-13 50.5 15.8 5 9 0.22 1.4e+02 2.9 0.0 2 24 455 477 454 478 0.89 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF398-202 - 642 1.6e-13 50.5 15.8 6 9 0.015 9.7 6.6 0.0 2 20 483 501 482 502 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF398-202 - 642 1.6e-13 50.5 15.8 7 9 0.11 68 3.9 0.1 2 21 511 530 510 531 0.88 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF398-202 - 642 1.6e-13 50.5 15.8 8 9 0.00024 0.15 12.3 0.6 2 22 539 559 538 559 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF398-202 - 642 1.6e-13 50.5 15.8 9 9 0.0019 1.2 9.5 0.1 2 23 567 588 566 591 0.92 Zinc-finger double-stranded RNA-binding DUF3669 PF12417.8 72 ZNF398-202 - 642 1e-08 35.2 0.1 1 2 1.4 8.9e+02 0.2 0.0 33 57 25 48 19 56 0.85 Zinc finger protein DUF3669 PF12417.8 72 ZNF398-202 - 642 1e-08 35.2 0.1 2 2 7.2e-11 4.6e-08 33.1 0.0 2 71 44 112 43 113 0.91 Zinc finger protein # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF398-202.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF398-202.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF398-202.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF398-202.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF398-202.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:05:26 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-C2H2 PF00096.26 23 ZNF398-203 - 471 3.5e-36 121.6 77.1 1 9 0.0028 1.7 9.2 7.1 1 23 172 193 172 193 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF398-203 - 471 3.5e-36 121.6 77.1 2 9 0.032 20 5.9 0.1 2 17 200 215 199 216 0.88 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF398-203 - 471 3.5e-36 121.6 77.1 3 9 1.4e-05 0.0088 16.5 4.5 2 23 228 249 228 249 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF398-203 - 471 3.5e-36 121.6 77.1 4 9 2e-07 0.00012 22.3 0.2 1 23 256 278 256 278 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF398-203 - 471 3.5e-36 121.6 77.1 5 9 9.3e-06 0.0057 17.0 0.4 1 23 284 306 284 306 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF398-203 - 471 3.5e-36 121.6 77.1 6 9 5.7e-06 0.0035 17.7 0.2 1 23 312 334 312 334 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF398-203 - 471 3.5e-36 121.6 77.1 7 9 1.6e-07 0.0001 22.6 3.7 1 23 340 362 340 362 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF398-203 - 471 3.5e-36 121.6 77.1 8 9 1.6e-08 9.6e-06 25.8 7.4 1 23 368 390 368 390 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF398-203 - 471 3.5e-36 121.6 77.1 9 9 5e-08 3.1e-05 24.2 1.7 1 23 396 419 396 419 0.98 Zinc finger, C2H2 type zf-H2C2_2 PF13465.6 26 ZNF398-203 - 471 7.6e-36 121.0 60.9 1 10 1.2 7.4e+02 0.9 0.1 11 23 168 180 167 183 0.81 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF398-203 - 471 7.6e-36 121.0 60.9 2 10 0.38 2.4e+02 2.4 3.5 8 25 192 209 186 209 0.83 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF398-203 - 471 7.6e-36 121.0 60.9 3 10 0.0033 2.1 9.0 1.7 8 26 220 238 218 238 0.89 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF398-203 - 471 7.6e-36 121.0 60.9 4 10 2.8e-08 1.8e-05 25.0 0.8 2 25 242 266 241 267 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF398-203 - 471 7.6e-36 121.0 60.9 5 10 2.9e-05 0.018 15.4 0.3 2 25 271 294 270 294 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF398-203 - 471 7.6e-36 121.0 60.9 6 10 2.3e-05 0.014 15.8 0.0 2 22 299 319 298 322 0.85 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF398-203 - 471 7.6e-36 121.0 60.9 7 10 7.5e-09 4.6e-06 26.8 0.2 1 24 326 349 326 349 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF398-203 - 471 7.6e-36 121.0 60.9 8 10 1.9e-09 1.2e-06 28.7 2.5 1 24 354 377 354 379 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF398-203 - 471 7.6e-36 121.0 60.9 9 10 1.8e-10 1.1e-07 31.9 2.3 1 25 382 406 382 407 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF398-203 - 471 7.6e-36 121.0 60.9 10 10 4.4 2.7e+03 -0.9 0.1 2 11 411 421 411 422 0.85 Zinc-finger double domain zf-C2H2_4 PF13894.6 24 ZNF398-203 - 471 2.7e-24 83.8 68.7 1 9 0.053 33 5.7 4.9 1 19 172 189 172 193 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF398-203 - 471 2.7e-24 83.8 68.7 2 9 0.38 2.4e+02 3.0 0.1 2 14 200 211 199 216 0.76 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF398-203 - 471 2.7e-24 83.8 68.7 3 9 0.00016 0.099 13.5 2.3 2 23 228 249 227 250 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF398-203 - 471 2.7e-24 83.8 68.7 4 9 3.7e-06 0.0023 18.6 0.1 1 23 256 278 256 279 0.97 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF398-203 - 471 2.7e-24 83.8 68.7 5 9 0.00053 0.33 11.9 0.3 1 23 284 306 284 307 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF398-203 - 471 2.7e-24 83.8 68.7 6 9 5.1e-05 0.031 15.1 0.2 1 23 312 334 312 335 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF398-203 - 471 2.7e-24 83.8 68.7 7 9 6.6e-06 0.0041 17.8 2.4 1 23 340 362 340 363 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF398-203 - 471 2.7e-24 83.8 68.7 8 9 1.4e-05 0.0085 16.8 5.7 1 23 368 390 368 391 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF398-203 - 471 2.7e-24 83.8 68.7 9 9 1.4e-06 0.00084 20.0 1.1 1 22 396 417 396 419 0.94 C2H2-type zinc finger zf-C2H2_jaz PF12171.8 27 ZNF398-203 - 471 5.4e-15 55.2 15.2 1 9 0.6 3.7e+02 1.6 0.1 2 10 172 180 171 187 0.86 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF398-203 - 471 5.4e-15 55.2 15.2 2 9 1.7 1.1e+03 0.1 0.0 4 11 201 208 198 213 0.89 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF398-203 - 471 5.4e-15 55.2 15.2 3 9 0.0027 1.7 9.1 0.0 3 22 228 247 226 247 0.89 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF398-203 - 471 5.4e-15 55.2 15.2 4 9 0.0077 4.7 7.6 0.0 2 21 256 275 255 276 0.91 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF398-203 - 471 5.4e-15 55.2 15.2 5 9 0.16 97 3.4 0.0 2 24 284 306 283 307 0.89 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF398-203 - 471 5.4e-15 55.2 15.2 6 9 0.011 6.8 7.1 0.0 2 20 312 330 311 331 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF398-203 - 471 5.4e-15 55.2 15.2 7 9 0.076 47 4.4 0.1 2 21 340 359 339 360 0.88 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF398-203 - 471 5.4e-15 55.2 15.2 8 9 0.00017 0.11 12.8 0.6 2 22 368 388 367 388 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF398-203 - 471 5.4e-15 55.2 15.2 9 9 0.0014 0.87 10.0 0.1 2 23 396 417 395 420 0.92 Zinc-finger double-stranded RNA-binding # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF398-203.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF398-203.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF398-203.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF398-203.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF398-203.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:05:27 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF398-204.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF398-204.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF398-204.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF398-204.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF398-204.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:05:27 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-C2H2 PF00096.26 23 ZNF398-205 - 647 8.7e-35 117.2 77.1 1 9 0.0039 2.5 8.7 7.1 1 23 348 369 348 369 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF398-205 - 647 8.7e-35 117.2 77.1 2 9 0.045 29 5.4 0.1 2 17 376 391 375 392 0.88 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF398-205 - 647 8.7e-35 117.2 77.1 3 9 2e-05 0.013 15.9 4.5 2 23 404 425 404 425 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF398-205 - 647 8.7e-35 117.2 77.1 4 9 2.8e-07 0.00018 21.8 0.2 1 23 432 454 432 454 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF398-205 - 647 8.7e-35 117.2 77.1 5 9 1.3e-05 0.0084 16.5 0.4 1 23 460 482 460 482 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF398-205 - 647 8.7e-35 117.2 77.1 6 9 8e-06 0.0051 17.2 0.2 1 23 488 510 488 510 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF398-205 - 647 8.7e-35 117.2 77.1 7 9 2.3e-07 0.00015 22.1 3.7 1 23 516 538 516 538 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF398-205 - 647 8.7e-35 117.2 77.1 8 9 2.2e-08 1.4e-05 25.3 7.4 1 23 544 566 544 566 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF398-205 - 647 8.7e-35 117.2 77.1 9 9 7.1e-08 4.6e-05 23.7 1.7 1 23 572 595 572 595 0.98 Zinc finger, C2H2 type zf-H2C2_2 PF13465.6 26 ZNF398-205 - 647 2.3e-34 116.3 60.9 1 10 1.7 1.1e+03 0.4 0.1 11 23 344 356 343 359 0.81 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF398-205 - 647 2.3e-34 116.3 60.9 2 10 0.53 3.4e+02 1.9 3.5 8 25 368 385 362 385 0.83 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF398-205 - 647 2.3e-34 116.3 60.9 3 10 0.0046 3 8.4 1.7 8 26 396 414 394 414 0.89 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF398-205 - 647 2.3e-34 116.3 60.9 4 10 4e-08 2.6e-05 24.4 0.8 2 25 418 442 417 443 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF398-205 - 647 2.3e-34 116.3 60.9 5 10 4.1e-05 0.026 14.9 0.3 2 25 447 470 446 470 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF398-205 - 647 2.3e-34 116.3 60.9 6 10 3.2e-05 0.021 15.3 0.0 2 22 475 495 474 498 0.85 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF398-205 - 647 2.3e-34 116.3 60.9 7 10 1.1e-08 6.7e-06 26.3 0.2 1 24 502 525 502 525 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF398-205 - 647 2.3e-34 116.3 60.9 8 10 2.7e-09 1.7e-06 28.2 2.5 1 24 530 553 530 555 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF398-205 - 647 2.3e-34 116.3 60.9 9 10 2.5e-10 1.6e-07 31.4 2.3 1 25 558 582 558 583 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF398-205 - 647 2.3e-34 116.3 60.9 10 10 6 3.9e+03 -1.4 0.1 2 11 587 597 587 598 0.85 Zinc-finger double domain zf-C2H2_4 PF13894.6 24 ZNF398-205 - 647 1.7e-23 81.2 66.8 1 9 0.075 48 5.2 4.9 1 19 348 365 348 369 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF398-205 - 647 1.7e-23 81.2 66.8 2 9 0.53 3.4e+02 2.5 0.1 2 14 376 387 375 392 0.76 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF398-205 - 647 1.7e-23 81.2 66.8 3 9 0.00023 0.14 13.0 2.3 2 23 404 425 403 426 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF398-205 - 647 1.7e-23 81.2 66.8 4 9 5.2e-06 0.0034 18.1 0.1 1 23 432 454 432 455 0.97 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF398-205 - 647 1.7e-23 81.2 66.8 5 9 0.00075 0.48 11.4 0.3 1 23 460 482 460 483 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF398-205 - 647 1.7e-23 81.2 66.8 6 9 7.2e-05 0.046 14.6 0.2 1 23 488 510 488 511 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF398-205 - 647 1.7e-23 81.2 66.8 7 9 9.4e-06 0.006 17.3 2.4 1 23 516 538 516 539 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF398-205 - 647 1.7e-23 81.2 66.8 8 9 2e-05 0.012 16.3 5.7 1 23 544 566 544 567 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF398-205 - 647 1.7e-23 81.2 66.8 9 9 1.9e-06 0.0012 19.5 1.1 1 22 572 593 572 595 0.94 C2H2-type zinc finger KRAB PF01352.27 42 ZNF398-205 - 647 2.4e-16 59.1 0.8 1 1 6e-19 3.9e-16 58.4 0.0 1 42 147 188 147 188 0.98 KRAB box zf-C2H2_jaz PF12171.8 27 ZNF398-205 - 647 1.8e-13 50.3 15.9 1 9 0.82 5.3e+02 1.1 0.1 2 10 348 356 347 363 0.86 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF398-205 - 647 1.8e-13 50.3 15.9 2 9 2.9 1.8e+03 -0.6 0.1 4 11 377 384 375 388 0.91 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF398-205 - 647 1.8e-13 50.3 15.9 3 9 0.0037 2.4 8.5 0.0 3 22 404 423 402 423 0.89 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF398-205 - 647 1.8e-13 50.3 15.9 4 9 0.011 6.9 7.1 0.0 2 21 432 451 431 452 0.91 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF398-205 - 647 1.8e-13 50.3 15.9 5 9 0.22 1.4e+02 2.9 0.0 2 24 460 482 459 483 0.89 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF398-205 - 647 1.8e-13 50.3 15.9 6 9 0.015 9.8 6.6 0.0 2 20 488 506 487 507 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF398-205 - 647 1.8e-13 50.3 15.9 7 9 0.11 68 3.9 0.1 2 21 516 535 515 536 0.88 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF398-205 - 647 1.8e-13 50.3 15.9 8 9 0.00024 0.16 12.3 0.6 2 22 544 564 543 564 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF398-205 - 647 1.8e-13 50.3 15.9 9 9 0.002 1.3 9.4 0.1 2 23 572 593 571 596 0.92 Zinc-finger double-stranded RNA-binding DUF3669 PF12417.8 72 ZNF398-205 - 647 1e-08 35.2 0.1 1 2 1.1 7.1e+02 0.5 0.0 33 58 30 54 21 68 0.84 Zinc finger protein DUF3669 PF12417.8 72 ZNF398-205 - 647 1e-08 35.2 0.1 2 2 7.3e-11 4.7e-08 33.1 0.0 2 71 49 117 48 118 0.91 Zinc finger protein # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF398-205.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF398-205.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF398-205.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF398-205.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF398-205.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:05:28 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZNF404-201 - 518 3.6e-100 324.3 116.9 1 16 0.0087 8.6 7.0 0.5 5 25 87 107 83 108 0.90 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF404-201 - 518 3.6e-100 324.3 116.9 2 16 2e-09 2e-06 27.9 0.2 1 25 111 135 111 135 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF404-201 - 518 3.6e-100 324.3 116.9 3 16 1.5e-06 0.0014 18.9 2.4 2 24 140 162 139 163 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF404-201 - 518 3.6e-100 324.3 116.9 4 16 1.6e-09 1.6e-06 28.3 0.2 2 25 168 191 167 192 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF404-201 - 518 3.6e-100 324.3 116.9 5 16 2.2e-07 0.00022 21.5 0.5 1 24 195 218 195 220 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF404-201 - 518 3.6e-100 324.3 116.9 6 16 2.6e-08 2.5e-05 24.5 7.9 2 26 220 248 219 248 0.84 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF404-201 - 518 3.6e-100 324.3 116.9 7 16 3.2e-10 3.2e-07 30.5 1.4 2 26 252 276 251 276 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF404-201 - 518 3.6e-100 324.3 116.9 8 16 1.1e-11 1.1e-08 35.1 0.8 2 25 280 303 280 304 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF404-201 - 518 3.6e-100 324.3 116.9 9 16 3.3e-07 0.00033 21.0 0.6 2 24 308 330 307 330 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF404-201 - 518 3.6e-100 324.3 116.9 10 16 1.1e-11 1.1e-08 35.0 2.2 2 25 336 359 335 359 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF404-201 - 518 3.6e-100 324.3 116.9 11 16 3.7e-08 3.7e-05 24.0 0.2 2 25 364 387 363 388 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF404-201 - 518 3.6e-100 324.3 116.9 12 16 2e-09 2e-06 27.9 0.7 1 24 391 414 391 415 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF404-201 - 518 3.6e-100 324.3 116.9 13 16 2.1e-08 2.1e-05 24.7 0.7 2 25 420 443 419 444 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF404-201 - 518 3.6e-100 324.3 116.9 14 16 5.4e-13 5.4e-10 39.2 0.6 1 25 447 471 447 472 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF404-201 - 518 3.6e-100 324.3 116.9 15 16 3.4e-08 3.4e-05 24.1 1.4 2 26 476 500 475 500 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF404-201 - 518 3.6e-100 324.3 116.9 16 16 0.0047 4.6 7.8 0.6 2 13 504 515 503 517 0.90 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZNF404-201 - 518 1.5e-60 198.4 127.2 1 15 0.15 1.5e+02 3.1 0.8 7 23 100 119 97 119 0.81 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF404-201 - 518 1.5e-60 198.4 127.2 2 15 5.2e-06 0.0051 17.2 1.3 1 23 125 147 125 147 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF404-201 - 518 1.5e-60 198.4 127.2 3 15 1.3e-06 0.0013 19.1 0.2 1 23 153 175 153 175 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF404-201 - 518 1.5e-60 198.4 127.2 4 15 4.3e-08 4.3e-05 23.7 4.4 1 23 181 203 181 203 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF404-201 - 518 1.5e-60 198.4 127.2 5 15 0.0015 1.5 9.4 6.8 1 23 209 231 209 232 0.95 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF404-201 - 518 1.5e-60 198.4 127.2 6 15 9.2e-07 0.00091 19.6 2.8 1 23 237 259 237 259 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF404-201 - 518 1.5e-60 198.4 127.2 7 15 4.1e-08 4e-05 23.8 0.6 1 23 265 287 265 287 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF404-201 - 518 1.5e-60 198.4 127.2 8 15 2e-05 0.02 15.3 0.7 1 23 293 315 293 315 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF404-201 - 518 1.5e-60 198.4 127.2 9 15 2.5e-08 2.5e-05 24.5 1.7 1 23 321 343 321 343 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF404-201 - 518 1.5e-60 198.4 127.2 10 15 3.2e-06 0.0032 17.8 2.5 1 23 349 371 349 371 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF404-201 - 518 1.5e-60 198.4 127.2 11 15 5.9e-08 5.8e-05 23.3 0.3 1 23 377 399 377 399 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF404-201 - 518 1.5e-60 198.4 127.2 12 15 4.2e-07 0.00042 20.6 0.6 1 23 405 427 405 427 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF404-201 - 518 1.5e-60 198.4 127.2 13 15 9e-07 0.00089 19.6 0.7 1 23 433 455 433 455 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF404-201 - 518 1.5e-60 198.4 127.2 14 15 1.1e-06 0.0011 19.3 0.5 1 23 461 483 461 483 0.95 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF404-201 - 518 1.5e-60 198.4 127.2 15 15 8.2e-06 0.0082 16.5 7.6 2 23 490 511 489 512 0.95 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZNF404-201 - 518 5.7e-34 113.8 123.0 1 15 1.9 1.9e+03 0.2 0.5 7 23 103 119 97 120 0.78 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF404-201 - 518 5.7e-34 113.8 123.0 2 15 0.00016 0.16 12.9 1.2 1 23 125 147 125 148 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF404-201 - 518 5.7e-34 113.8 123.0 3 15 0.00077 0.77 10.8 0.2 1 23 153 175 153 176 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF404-201 - 518 5.7e-34 113.8 123.0 4 15 5.4e-05 0.054 14.4 3.1 1 23 181 203 181 204 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF404-201 - 518 5.7e-34 113.8 123.0 5 15 0.0011 1.1 10.3 6.6 1 24 209 232 209 232 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF404-201 - 518 5.7e-34 113.8 123.0 6 15 0.00012 0.12 13.2 2.4 1 23 237 259 237 260 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF404-201 - 518 5.7e-34 113.8 123.0 7 15 3.2e-05 0.031 15.1 0.9 1 23 265 287 265 288 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF404-201 - 518 5.7e-34 113.8 123.0 8 15 0.00067 0.67 10.9 0.8 1 23 293 315 293 316 0.89 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF404-201 - 518 5.7e-34 113.8 123.0 9 15 0.0003 0.3 12.1 1.3 3 23 323 343 321 344 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF404-201 - 518 5.7e-34 113.8 123.0 10 15 0.00041 0.41 11.6 2.0 1 23 349 371 349 372 0.91 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF404-201 - 518 5.7e-34 113.8 123.0 11 15 3.3e-06 0.0033 18.1 0.2 1 23 377 399 377 400 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF404-201 - 518 5.7e-34 113.8 123.0 12 15 8.4e-05 0.083 13.8 0.5 1 23 405 427 405 428 0.91 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF404-201 - 518 5.7e-34 113.8 123.0 13 15 1.3e-05 0.013 16.3 0.7 1 23 433 455 433 456 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF404-201 - 518 5.7e-34 113.8 123.0 14 15 8.9e-05 0.089 13.7 0.3 1 23 461 483 461 484 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF404-201 - 518 5.7e-34 113.8 123.0 15 15 0.00011 0.11 13.3 8.0 2 24 490 512 489 512 0.98 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF404-201 - 518 4.2e-21 74.4 133.1 1 15 0.015 15 5.7 1.7 2 24 97 119 96 121 0.95 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF404-201 - 518 4.2e-21 74.4 133.1 2 15 0.00017 0.17 11.9 0.7 2 24 125 147 125 149 0.88 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF404-201 - 518 4.2e-21 74.4 133.1 3 15 0.027 26 4.9 0.5 2 20 153 171 153 175 0.86 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF404-201 - 518 4.2e-21 74.4 133.1 4 15 0.00099 0.99 9.5 4.2 2 22 181 201 181 203 0.88 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF404-201 - 518 4.2e-21 74.4 133.1 5 15 0.0031 3.1 7.9 3.5 2 13 209 220 209 233 0.81 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF404-201 - 518 4.2e-21 74.4 133.1 6 15 0.00086 0.86 9.7 4.5 2 24 237 259 237 262 0.91 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF404-201 - 518 4.2e-21 74.4 133.1 7 15 0.0013 1.3 9.1 1.0 2 24 265 287 265 290 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF404-201 - 518 4.2e-21 74.4 133.1 8 15 2.6e-06 0.0026 17.7 2.5 2 26 293 317 293 318 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF404-201 - 518 4.2e-21 74.4 133.1 9 15 0.085 84 3.3 1.3 2 22 321 341 320 345 0.83 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF404-201 - 518 4.2e-21 74.4 133.1 10 15 0.00032 0.32 11.1 2.1 2 12 349 359 349 359 0.95 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF404-201 - 518 4.2e-21 74.4 133.1 11 15 7.9e-05 0.078 13.0 0.5 2 20 377 395 377 400 0.87 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF404-201 - 518 4.2e-21 74.4 133.1 12 15 0.00023 0.23 11.5 1.3 2 12 405 415 405 415 0.95 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF404-201 - 518 4.2e-21 74.4 133.1 13 15 6.6e-07 0.00065 19.6 0.8 2 24 433 455 433 458 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF404-201 - 518 4.2e-21 74.4 133.1 14 15 7.5e-05 0.074 13.1 0.3 2 20 461 479 461 483 0.88 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF404-201 - 518 4.2e-21 74.4 133.1 15 15 0.18 1.7e+02 2.3 8.8 3 26 490 513 490 514 0.89 C2H2-type zinc finger Zn-ribbon_8 PF09723.10 40 ZNF404-201 - 518 2.6e-14 53.0 77.6 1 11 0.00091 0.91 9.7 5.1 6 34 125 160 124 163 0.76 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF404-201 - 518 2.6e-14 53.0 77.6 2 11 0.0011 1.1 9.4 3.8 6 38 153 192 150 194 0.83 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF404-201 - 518 2.6e-14 53.0 77.6 3 11 0.0012 1.2 9.4 6.6 6 35 181 217 180 219 0.82 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF404-201 - 518 2.6e-14 53.0 77.6 4 11 0.00065 0.65 10.2 7.0 6 34 209 244 206 248 0.92 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF404-201 - 518 2.6e-14 53.0 77.6 5 11 0.0042 4.1 7.6 0.5 6 18 237 249 234 257 0.84 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF404-201 - 518 2.6e-14 53.0 77.6 6 11 0.00023 0.23 11.6 2.9 6 35 265 301 264 304 0.90 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF404-201 - 518 2.6e-14 53.0 77.6 7 11 9.1e-05 0.091 12.9 4.1 6 35 321 357 320 360 0.91 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF404-201 - 518 2.6e-14 53.0 77.6 8 11 4.7e-06 0.0047 17.0 3.6 6 36 377 414 376 416 0.91 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF404-201 - 518 2.6e-14 53.0 77.6 9 11 0.0006 0.6 10.3 4.6 6 36 405 442 403 445 0.84 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF404-201 - 518 2.6e-14 53.0 77.6 10 11 0.021 21 5.3 0.3 6 22 433 449 431 455 0.82 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF404-201 - 518 2.6e-14 53.0 77.6 11 11 0.00064 0.64 10.2 5.3 6 35 461 497 460 502 0.74 Zinc ribbon domain XPA_N PF01286.18 32 ZNF404-201 - 518 6.5e-14 51.7 63.9 1 14 0.018 18 5.5 0.1 3 11 126 134 124 136 0.89 XPA protein N-terminal XPA_N PF01286.18 32 ZNF404-201 - 518 6.5e-14 51.7 63.9 2 14 0.9 9e+02 0.0 0.1 3 11 154 162 152 170 0.88 XPA protein N-terminal XPA_N PF01286.18 32 ZNF404-201 - 518 6.5e-14 51.7 63.9 3 14 0.038 38 4.4 0.1 3 12 182 191 180 199 0.86 XPA protein N-terminal XPA_N PF01286.18 32 ZNF404-201 - 518 6.5e-14 51.7 63.9 4 14 0.058 58 3.8 0.8 3 11 210 218 208 220 0.90 XPA protein N-terminal XPA_N PF01286.18 32 ZNF404-201 - 518 6.5e-14 51.7 63.9 5 14 0.0035 3.5 7.8 0.1 3 12 238 247 236 255 0.79 XPA protein N-terminal XPA_N PF01286.18 32 ZNF404-201 - 518 6.5e-14 51.7 63.9 6 14 5.5e-05 0.055 13.5 0.1 3 17 266 280 264 283 0.93 XPA protein N-terminal XPA_N PF01286.18 32 ZNF404-201 - 518 6.5e-14 51.7 63.9 7 14 0.0022 2.2 8.4 0.1 3 12 294 303 292 311 0.77 XPA protein N-terminal XPA_N PF01286.18 32 ZNF404-201 - 518 6.5e-14 51.7 63.9 8 14 0.024 24 5.1 0.7 3 12 322 331 321 339 0.81 XPA protein N-terminal XPA_N PF01286.18 32 ZNF404-201 - 518 6.5e-14 51.7 63.9 9 14 0.0004 0.4 10.8 0.1 3 19 350 367 348 367 0.81 XPA protein N-terminal XPA_N PF01286.18 32 ZNF404-201 - 518 6.5e-14 51.7 63.9 10 14 0.044 44 4.2 0.2 3 12 378 387 376 388 0.88 XPA protein N-terminal XPA_N PF01286.18 32 ZNF404-201 - 518 6.5e-14 51.7 63.9 11 14 0.0048 4.8 7.3 0.1 3 12 406 415 404 423 0.79 XPA protein N-terminal XPA_N PF01286.18 32 ZNF404-201 - 518 6.5e-14 51.7 63.9 12 14 0.034 33 4.6 0.1 3 11 434 442 432 446 0.88 XPA protein N-terminal XPA_N PF01286.18 32 ZNF404-201 - 518 6.5e-14 51.7 63.9 13 14 0.0056 5.5 7.1 0.2 3 14 462 473 460 476 0.90 XPA protein N-terminal XPA_N PF01286.18 32 ZNF404-201 - 518 6.5e-14 51.7 63.9 14 14 0.0044 4.4 7.4 1.4 2 14 489 501 488 506 0.84 XPA protein N-terminal zf-C2H2_jaz PF12171.8 27 ZNF404-201 - 518 3.6e-12 46.2 73.3 1 14 2.9 2.8e+03 -1.2 0.2 10 21 77 88 75 90 0.70 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF404-201 - 518 3.6e-12 46.2 73.3 2 14 1.1 1.1e+03 0.0 0.2 2 11 125 134 124 135 0.88 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF404-201 - 518 3.6e-12 46.2 73.3 3 14 0.0015 1.5 9.2 0.9 2 22 181 201 180 201 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF404-201 - 518 3.6e-12 46.2 73.3 4 14 0.31 3.1e+02 1.8 0.1 2 11 209 218 208 219 0.86 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF404-201 - 518 3.6e-12 46.2 73.3 5 14 0.011 11 6.5 0.5 2 22 237 257 236 257 0.90 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF404-201 - 518 3.6e-12 46.2 73.3 6 14 0.00014 0.14 12.5 1.1 2 24 265 287 264 293 0.88 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF404-201 - 518 3.6e-12 46.2 73.3 7 14 0.013 13 6.2 0.0 2 22 293 313 292 313 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF404-201 - 518 3.6e-12 46.2 73.3 8 14 0.25 2.5e+02 2.1 0.4 2 22 321 341 320 341 0.89 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF404-201 - 518 3.6e-12 46.2 73.3 9 14 0.0024 2.4 8.6 1.1 2 20 349 367 348 368 0.87 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF404-201 - 518 3.6e-12 46.2 73.3 10 14 0.0011 1 9.7 0.0 2 21 377 396 376 397 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF404-201 - 518 3.6e-12 46.2 73.3 11 14 0.006 6 7.3 0.2 2 20 405 423 404 425 0.80 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF404-201 - 518 3.6e-12 46.2 73.3 12 14 0.00085 0.85 10.0 0.1 2 22 433 453 432 453 0.91 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF404-201 - 518 3.6e-12 46.2 73.3 13 14 3.4e-05 0.034 14.4 0.2 2 21 461 480 460 481 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF404-201 - 518 3.6e-12 46.2 73.3 14 14 0.29 2.9e+02 1.9 3.8 4 22 491 509 490 509 0.91 Zinc-finger double-stranded RNA-binding # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF404-201.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF404-201.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF404-201.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF404-201.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF404-201.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:05:28 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZNF404-202 - 552 1.2e-99 322.7 116.9 1 16 0.0083 9.3 6.9 0.5 5 25 121 141 117 142 0.90 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF404-202 - 552 1.2e-99 322.7 116.9 2 16 1.9e-09 2.2e-06 27.8 0.2 1 25 145 169 145 169 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF404-202 - 552 1.2e-99 322.7 116.9 3 16 1.4e-06 0.0016 18.8 2.4 2 24 174 196 173 197 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF404-202 - 552 1.2e-99 322.7 116.9 4 16 1.5e-09 1.7e-06 28.2 0.2 2 25 202 225 201 226 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF404-202 - 552 1.2e-99 322.7 116.9 5 16 2.1e-07 0.00024 21.4 0.5 1 24 229 252 229 254 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF404-202 - 552 1.2e-99 322.7 116.9 6 16 2.5e-08 2.7e-05 24.4 7.9 2 26 254 282 253 282 0.84 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF404-202 - 552 1.2e-99 322.7 116.9 7 16 3.1e-10 3.5e-07 30.4 1.4 2 26 286 310 285 310 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF404-202 - 552 1.2e-99 322.7 116.9 8 16 1.1e-11 1.2e-08 35.0 0.8 2 25 314 337 314 338 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF404-202 - 552 1.2e-99 322.7 116.9 9 16 3.1e-07 0.00035 20.9 0.6 2 24 342 364 341 364 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF404-202 - 552 1.2e-99 322.7 116.9 10 16 1.1e-11 1.2e-08 34.9 2.2 2 25 370 393 369 393 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF404-202 - 552 1.2e-99 322.7 116.9 11 16 3.5e-08 3.9e-05 23.9 0.2 2 25 398 421 397 422 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF404-202 - 552 1.2e-99 322.7 116.9 12 16 1.9e-09 2.2e-06 27.8 0.7 1 24 425 448 425 449 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF404-202 - 552 1.2e-99 322.7 116.9 13 16 2e-08 2.3e-05 24.6 0.7 2 25 454 477 453 478 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF404-202 - 552 1.2e-99 322.7 116.9 14 16 5.2e-13 5.8e-10 39.1 0.6 1 25 481 505 481 506 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF404-202 - 552 1.2e-99 322.7 116.9 15 16 3.2e-08 3.6e-05 24.0 1.4 2 26 510 534 509 534 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF404-202 - 552 1.2e-99 322.7 116.9 16 16 0.0045 5 7.7 0.6 2 13 538 549 537 551 0.90 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZNF404-202 - 552 4.4e-60 196.9 127.2 1 15 0.14 1.6e+02 3.0 0.8 7 23 134 153 131 153 0.81 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF404-202 - 552 4.4e-60 196.9 127.2 2 15 5e-06 0.0056 17.1 1.3 1 23 159 181 159 181 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF404-202 - 552 4.4e-60 196.9 127.2 3 15 1.3e-06 0.0014 19.0 0.2 1 23 187 209 187 209 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF404-202 - 552 4.4e-60 196.9 127.2 4 15 4.1e-08 4.6e-05 23.6 4.4 1 23 215 237 215 237 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF404-202 - 552 4.4e-60 196.9 127.2 5 15 0.0015 1.6 9.3 6.8 1 23 243 265 243 266 0.95 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF404-202 - 552 4.4e-60 196.9 127.2 6 15 8.8e-07 0.00099 19.4 2.8 1 23 271 293 271 293 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF404-202 - 552 4.4e-60 196.9 127.2 7 15 3.9e-08 4.4e-05 23.7 0.6 1 23 299 321 299 321 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF404-202 - 552 4.4e-60 196.9 127.2 8 15 1.9e-05 0.021 15.2 0.7 1 23 327 349 327 349 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF404-202 - 552 4.4e-60 196.9 127.2 9 15 2.4e-08 2.7e-05 24.4 1.7 1 23 355 377 355 377 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF404-202 - 552 4.4e-60 196.9 127.2 10 15 3.1e-06 0.0034 17.7 2.5 1 23 383 405 383 405 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF404-202 - 552 4.4e-60 196.9 127.2 11 15 5.6e-08 6.3e-05 23.2 0.3 1 23 411 433 411 433 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF404-202 - 552 4.4e-60 196.9 127.2 12 15 4.1e-07 0.00045 20.5 0.6 1 23 439 461 439 461 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF404-202 - 552 4.4e-60 196.9 127.2 13 15 8.6e-07 0.00096 19.5 0.7 1 23 467 489 467 489 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF404-202 - 552 4.4e-60 196.9 127.2 14 15 1.1e-06 0.0012 19.2 0.5 1 23 495 517 495 517 0.95 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF404-202 - 552 4.4e-60 196.9 127.2 15 15 7.9e-06 0.0089 16.4 7.6 2 23 524 545 523 546 0.95 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZNF404-202 - 552 1.7e-33 112.4 123.0 1 15 1.8 2.1e+03 0.1 0.5 7 23 137 153 131 154 0.78 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF404-202 - 552 1.7e-33 112.4 123.0 2 15 0.00015 0.17 12.8 1.2 1 23 159 181 159 182 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF404-202 - 552 1.7e-33 112.4 123.0 3 15 0.00074 0.83 10.7 0.2 1 23 187 209 187 210 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF404-202 - 552 1.7e-33 112.4 123.0 4 15 5.2e-05 0.058 14.3 3.1 1 23 215 237 215 238 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF404-202 - 552 1.7e-33 112.4 123.0 5 15 0.001 1.2 10.2 6.6 1 24 243 266 243 266 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF404-202 - 552 1.7e-33 112.4 123.0 6 15 0.00012 0.13 13.1 2.4 1 23 271 293 271 294 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF404-202 - 552 1.7e-33 112.4 123.0 7 15 3e-05 0.034 15.0 0.9 1 23 299 321 299 322 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF404-202 - 552 1.7e-33 112.4 123.0 8 15 0.00065 0.73 10.8 0.8 1 23 327 349 327 350 0.89 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF404-202 - 552 1.7e-33 112.4 123.0 9 15 0.00029 0.32 11.9 1.3 3 23 357 377 355 378 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF404-202 - 552 1.7e-33 112.4 123.0 10 15 0.0004 0.45 11.5 2.0 1 23 383 405 383 406 0.91 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF404-202 - 552 1.7e-33 112.4 123.0 11 15 3.2e-06 0.0036 18.0 0.2 1 23 411 433 411 434 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF404-202 - 552 1.7e-33 112.4 123.0 12 15 8e-05 0.09 13.7 0.5 1 23 439 461 439 462 0.91 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF404-202 - 552 1.7e-33 112.4 123.0 13 15 1.2e-05 0.014 16.2 0.7 1 23 467 489 467 490 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF404-202 - 552 1.7e-33 112.4 123.0 14 15 8.5e-05 0.096 13.6 0.3 1 23 495 517 495 518 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF404-202 - 552 1.7e-33 112.4 123.0 15 15 0.00011 0.12 13.2 8.0 2 24 524 546 523 546 0.98 C2H2-type zinc finger KRAB PF01352.27 42 ZNF404-202 - 552 2.7e-24 84.5 0.8 1 1 4.6e-27 5.1e-24 83.6 0.8 1 42 5 46 5 46 0.98 KRAB box zf-C2H2_6 PF13912.6 27 ZNF404-202 - 552 1.3e-20 72.9 133.1 1 15 0.015 16 5.6 1.7 2 24 131 153 130 155 0.95 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF404-202 - 552 1.3e-20 72.9 133.1 2 15 0.00017 0.19 11.8 0.7 2 24 159 181 159 183 0.88 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF404-202 - 552 1.3e-20 72.9 133.1 3 15 0.025 28 4.8 0.5 2 20 187 205 187 209 0.86 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF404-202 - 552 1.3e-20 72.9 133.1 4 15 0.00095 1.1 9.4 4.2 2 22 215 235 215 237 0.88 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF404-202 - 552 1.3e-20 72.9 133.1 5 15 0.003 3.3 7.8 3.5 2 13 243 254 243 267 0.81 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF404-202 - 552 1.3e-20 72.9 133.1 6 15 0.00083 0.92 9.6 4.5 2 24 271 293 271 296 0.91 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF404-202 - 552 1.3e-20 72.9 133.1 7 15 0.0012 1.4 9.0 1.0 2 24 299 321 299 324 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF404-202 - 552 1.3e-20 72.9 133.1 8 15 2.5e-06 0.0028 17.6 2.5 2 26 327 351 327 352 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF404-202 - 552 1.3e-20 72.9 133.1 9 15 0.081 91 3.2 1.3 2 22 355 375 354 379 0.83 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF404-202 - 552 1.3e-20 72.9 133.1 10 15 0.0003 0.34 11.0 2.1 2 12 383 393 383 393 0.95 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF404-202 - 552 1.3e-20 72.9 133.1 11 15 7.5e-05 0.084 12.9 0.5 2 20 411 429 411 434 0.87 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF404-202 - 552 1.3e-20 72.9 133.1 12 15 0.00022 0.25 11.4 1.3 2 12 439 449 439 449 0.95 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF404-202 - 552 1.3e-20 72.9 133.1 13 15 6.3e-07 0.0007 19.5 0.8 2 24 467 489 467 492 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF404-202 - 552 1.3e-20 72.9 133.1 14 15 7.2e-05 0.08 13.0 0.3 2 20 495 513 495 517 0.88 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF404-202 - 552 1.3e-20 72.9 133.1 15 15 0.17 1.9e+02 2.2 8.8 3 26 524 547 524 548 0.89 C2H2-type zinc finger Zn-ribbon_8 PF09723.10 40 ZNF404-202 - 552 3.7e-14 52.6 77.1 1 11 0.00085 0.96 9.6 5.0 6 34 159 194 158 197 0.76 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF404-202 - 552 3.7e-14 52.6 77.1 2 11 0.00092 1 9.5 3.5 6 38 187 226 186 228 0.82 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF404-202 - 552 3.7e-14 52.6 77.1 3 11 0.001 1.1 9.4 6.5 6 35 215 251 214 253 0.82 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF404-202 - 552 3.7e-14 52.6 77.1 4 11 0.0008 0.9 9.7 7.3 6 34 243 278 240 282 0.92 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF404-202 - 552 3.7e-14 52.6 77.1 5 11 0.004 4.5 7.5 0.5 6 18 271 283 268 291 0.84 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF404-202 - 552 3.7e-14 52.6 77.1 6 11 0.00022 0.25 11.5 2.9 6 35 299 335 298 338 0.90 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF404-202 - 552 3.7e-14 52.6 77.1 7 11 8.8e-05 0.098 12.8 4.1 6 35 355 391 354 394 0.91 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF404-202 - 552 3.7e-14 52.6 77.1 8 11 4.7e-06 0.0052 16.9 3.7 6 36 411 448 410 451 0.91 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF404-202 - 552 3.7e-14 52.6 77.1 9 11 0.00059 0.66 10.1 4.6 6 36 439 476 438 479 0.84 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF404-202 - 552 3.7e-14 52.6 77.1 10 11 0.02 23 5.2 0.3 6 22 467 483 465 489 0.82 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF404-202 - 552 3.7e-14 52.6 77.1 11 11 0.00043 0.48 10.6 4.7 6 35 495 531 494 535 0.73 Zinc ribbon domain XPA_N PF01286.18 32 ZNF404-202 - 552 1.7e-13 50.3 63.9 1 14 0.018 20 5.4 0.1 3 11 160 168 158 170 0.89 XPA protein N-terminal XPA_N PF01286.18 32 ZNF404-202 - 552 1.7e-13 50.3 63.9 2 14 0.86 9.6e+02 -0.1 0.1 3 11 188 196 186 204 0.88 XPA protein N-terminal XPA_N PF01286.18 32 ZNF404-202 - 552 1.7e-13 50.3 63.9 3 14 0.036 41 4.3 0.1 3 12 216 225 214 233 0.86 XPA protein N-terminal XPA_N PF01286.18 32 ZNF404-202 - 552 1.7e-13 50.3 63.9 4 14 0.056 62 3.7 0.8 3 11 244 252 242 254 0.90 XPA protein N-terminal XPA_N PF01286.18 32 ZNF404-202 - 552 1.7e-13 50.3 63.9 5 14 0.0033 3.7 7.7 0.1 3 12 272 281 270 289 0.79 XPA protein N-terminal XPA_N PF01286.18 32 ZNF404-202 - 552 1.7e-13 50.3 63.9 6 14 5.3e-05 0.059 13.4 0.1 3 17 300 314 298 317 0.93 XPA protein N-terminal XPA_N PF01286.18 32 ZNF404-202 - 552 1.7e-13 50.3 63.9 7 14 0.0021 2.4 8.3 0.1 3 12 328 337 326 345 0.77 XPA protein N-terminal XPA_N PF01286.18 32 ZNF404-202 - 552 1.7e-13 50.3 63.9 8 14 0.023 25 5.0 0.7 3 12 356 365 355 373 0.81 XPA protein N-terminal XPA_N PF01286.18 32 ZNF404-202 - 552 1.7e-13 50.3 63.9 9 14 0.00038 0.43 10.7 0.1 3 19 384 401 382 401 0.81 XPA protein N-terminal XPA_N PF01286.18 32 ZNF404-202 - 552 1.7e-13 50.3 63.9 10 14 0.042 47 4.1 0.2 3 12 412 421 410 422 0.88 XPA protein N-terminal XPA_N PF01286.18 32 ZNF404-202 - 552 1.7e-13 50.3 63.9 11 14 0.0046 5.1 7.2 0.1 3 12 440 449 438 457 0.79 XPA protein N-terminal XPA_N PF01286.18 32 ZNF404-202 - 552 1.7e-13 50.3 63.9 12 14 0.032 36 4.5 0.1 3 11 468 476 466 480 0.88 XPA protein N-terminal XPA_N PF01286.18 32 ZNF404-202 - 552 1.7e-13 50.3 63.9 13 14 0.0053 5.9 7.0 0.2 3 14 496 507 494 510 0.90 XPA protein N-terminal XPA_N PF01286.18 32 ZNF404-202 - 552 1.7e-13 50.3 63.9 14 14 0.0042 4.7 7.3 1.4 2 14 523 535 522 540 0.84 XPA protein N-terminal zf-C2H2_jaz PF12171.8 27 ZNF404-202 - 552 9.6e-12 44.9 73.3 1 14 2.7 3e+03 -1.3 0.2 10 21 111 122 109 124 0.70 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF404-202 - 552 9.6e-12 44.9 73.3 2 14 1.1 1.2e+03 -0.1 0.2 2 11 159 168 158 169 0.88 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF404-202 - 552 9.6e-12 44.9 73.3 3 14 0.0015 1.7 9.1 0.9 2 22 215 235 214 235 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF404-202 - 552 9.6e-12 44.9 73.3 4 14 0.3 3.3e+02 1.7 0.1 2 11 243 252 242 253 0.86 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF404-202 - 552 9.6e-12 44.9 73.3 5 14 0.01 11 6.4 0.5 2 22 271 291 270 291 0.90 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF404-202 - 552 9.6e-12 44.9 73.3 6 14 0.00014 0.15 12.4 1.1 2 24 299 321 298 327 0.88 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF404-202 - 552 9.6e-12 44.9 73.3 7 14 0.013 14 6.1 0.0 2 22 327 347 326 347 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF404-202 - 552 9.6e-12 44.9 73.3 8 14 0.24 2.7e+02 2.0 0.4 2 22 355 375 354 375 0.89 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF404-202 - 552 9.6e-12 44.9 73.3 9 14 0.0023 2.5 8.5 1.1 2 20 383 401 382 402 0.87 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF404-202 - 552 9.6e-12 44.9 73.3 10 14 0.001 1.1 9.6 0.0 2 21 411 430 410 431 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF404-202 - 552 9.6e-12 44.9 73.3 11 14 0.0058 6.5 7.2 0.2 2 20 439 457 438 459 0.80 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF404-202 - 552 9.6e-12 44.9 73.3 12 14 0.00081 0.91 9.9 0.1 2 22 467 487 466 487 0.91 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF404-202 - 552 9.6e-12 44.9 73.3 13 14 3.3e-05 0.037 14.3 0.2 2 21 495 514 494 515 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF404-202 - 552 9.6e-12 44.9 73.3 14 14 0.28 3.1e+02 1.8 3.8 4 22 525 543 524 543 0.91 Zinc-finger double-stranded RNA-binding # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF404-202.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF404-202.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF404-202.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF404-202.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF404-202.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:05:29 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF404-203.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF404-203.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF404-203.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF404-203.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF404-203.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:05:29 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZNF407-201 - 2247 4.2e-39 131.3 159.1 1 22 1.4 4.2e+03 -1.5 0.0 13 25 183 195 180 196 0.77 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF407-201 - 2247 4.2e-39 131.3 159.1 2 22 1.5 4.6e+03 -1.6 5.9 1 21 199 220 199 225 0.83 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF407-201 - 2247 4.2e-39 131.3 159.1 3 22 0.0042 13 6.5 0.8 4 22 231 250 228 253 0.87 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF407-201 - 2247 4.2e-39 131.3 159.1 4 22 0.11 3.2e+02 2.0 1.4 2 23 542 564 541 565 0.84 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF407-201 - 2247 4.2e-39 131.3 159.1 5 22 0.049 1.5e+02 3.1 1.7 1 24 601 623 601 625 0.74 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF407-201 - 2247 4.2e-39 131.3 159.1 6 22 0.03 88 3.8 1.3 10 24 698 713 692 715 0.83 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF407-201 - 2247 4.2e-39 131.3 159.1 7 22 0.0019 5.8 7.5 0.5 2 21 719 739 718 744 0.84 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF407-201 - 2247 4.2e-39 131.3 159.1 8 22 0.0023 6.9 7.3 2.8 1 26 863 889 863 889 0.86 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF407-201 - 2247 4.2e-39 131.3 159.1 9 22 3.6 1.1e+04 -2.8 0.2 2 11 893 904 892 905 0.70 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF407-201 - 2247 4.2e-39 131.3 159.1 10 22 1.3e-07 0.00039 20.7 0.9 2 25 1031 1055 1030 1056 0.86 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF407-201 - 2247 4.2e-39 131.3 159.1 11 22 6 1.8e+04 -3.6 0.0 13 21 1411 1419 1408 1420 0.76 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF407-201 - 2247 4.2e-39 131.3 159.1 12 22 4.7e-05 0.14 12.6 2.7 1 24 1427 1452 1427 1454 0.88 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF407-201 - 2247 4.2e-39 131.3 159.1 13 22 1.5 4.5e+03 -1.6 0.1 17 22 1538 1543 1502 1546 0.86 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF407-201 - 2247 4.2e-39 131.3 159.1 14 22 1.9e-08 5.6e-05 23.4 1.1 4 25 1555 1576 1552 1577 0.90 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF407-201 - 2247 4.2e-39 131.3 159.1 15 22 3.1e-05 0.092 13.2 0.7 3 25 1582 1604 1582 1604 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF407-201 - 2247 4.2e-39 131.3 159.1 16 22 0.00038 1.1 9.8 2.6 1 25 1608 1637 1606 1638 0.77 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF407-201 - 2247 4.2e-39 131.3 159.1 17 22 4.5e-10 1.4e-06 28.5 1.8 1 26 1641 1668 1641 1668 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF407-201 - 2247 4.2e-39 131.3 159.1 18 22 4.2e-07 0.0012 19.1 0.1 2 23 1672 1693 1671 1696 0.88 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF407-201 - 2247 4.2e-39 131.3 159.1 19 22 2.7e-10 8e-07 29.2 0.9 1 25 1699 1723 1699 1724 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF407-201 - 2247 4.2e-39 131.3 159.1 20 22 2.1e-09 6.3e-06 26.4 4.6 1 24 1727 1750 1727 1752 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF407-201 - 2247 4.2e-39 131.3 159.1 21 22 1.2e-06 0.0037 17.6 0.9 5 24 1762 1781 1755 1782 0.86 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF407-201 - 2247 4.2e-39 131.3 159.1 22 22 2.3 6.9e+03 -2.2 0.1 2 10 1787 1796 1786 1818 0.62 Zinc-finger double domain zf-H2C2_5 PF13909.6 26 ZNF407-201 - 2247 2.8e-14 52.6 157.5 1 20 0.23 6.8e+02 0.1 6.9 3 25 216 238 214 239 0.92 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 ZNF407-201 - 2247 2.8e-14 52.6 157.5 2 20 0.72 2.2e+03 -1.5 0.2 10 24 536 550 529 551 0.83 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 ZNF407-201 - 2247 2.8e-14 52.6 157.5 3 20 6.3e-05 0.19 11.5 3.1 3 20 558 575 556 580 0.91 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 ZNF407-201 - 2247 2.8e-14 52.6 157.5 4 20 4.9e-05 0.15 11.9 1.0 2 25 588 611 587 612 0.95 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 ZNF407-201 - 2247 2.8e-14 52.6 157.5 5 20 0.0014 4.1 7.3 2.0 1 21 704 724 704 728 0.91 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 ZNF407-201 - 2247 2.8e-14 52.6 157.5 6 20 1.8 5.4e+03 -2.7 0.7 10 22 742 754 735 757 0.72 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 ZNF407-201 - 2247 2.8e-14 52.6 157.5 7 20 0.00022 0.66 9.8 2.3 3 25 851 873 850 874 0.97 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 ZNF407-201 - 2247 2.8e-14 52.6 157.5 8 20 0.00039 1.2 9.0 4.2 3 25 880 902 878 904 0.85 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 ZNF407-201 - 2247 2.8e-14 52.6 157.5 9 20 3.5e-08 0.0001 22.0 3.9 1 26 1016 1041 1016 1041 0.96 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 ZNF407-201 - 2247 2.8e-14 52.6 157.5 10 20 0.00018 0.53 10.1 0.9 3 21 1047 1065 1045 1070 0.84 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 ZNF407-201 - 2247 2.8e-14 52.6 157.5 11 20 1.1 3.2e+03 -2.0 0.1 13 21 1455 1463 1454 1463 0.84 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 ZNF407-201 - 2247 2.8e-14 52.6 157.5 12 20 0.68 2e+03 -1.4 0.3 19 26 1556 1562 1555 1562 0.94 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 ZNF407-201 - 2247 2.8e-14 52.6 157.5 13 20 0.0073 22 4.9 0.1 1 24 1566 1588 1566 1590 0.92 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 ZNF407-201 - 2247 2.8e-14 52.6 157.5 14 20 2.8 8.3e+03 -3.3 1.5 13 21 1606 1614 1604 1618 0.52 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 ZNF407-201 - 2247 2.8e-14 52.6 157.5 15 20 0.031 92 2.9 1.3 3 26 1629 1651 1627 1651 0.84 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 ZNF407-201 - 2247 2.8e-14 52.6 157.5 16 20 0.16 4.8e+02 0.6 2.8 1 26 1655 1681 1655 1681 0.92 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 ZNF407-201 - 2247 2.8e-14 52.6 157.5 17 20 0.0023 7 6.5 0.1 3 26 1687 1709 1685 1709 0.95 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 ZNF407-201 - 2247 2.8e-14 52.6 157.5 18 20 1.8e-09 5.3e-06 26.1 2.3 1 26 1713 1737 1713 1737 0.98 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 ZNF407-201 - 2247 2.8e-14 52.6 157.5 19 20 1.7e-07 0.00051 19.7 0.8 1 26 1741 1764 1741 1764 0.97 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 ZNF407-201 - 2247 2.8e-14 52.6 157.5 20 20 0.0013 3.9 7.3 0.0 1 24 1772 1795 1772 1796 0.95 C2H2-type zinc-finger domain zf-C2H2 PF00096.26 23 ZNF407-201 - 2247 1.9e-13 50.0 206.6 1 25 4.3e-05 0.13 12.8 2.3 2 23 186 207 185 207 0.95 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF407-201 - 2247 1.9e-13 50.0 206.6 2 25 1.5 4.4e+03 -1.5 8.7 1 23 214 237 214 237 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF407-201 - 2247 1.9e-13 50.0 206.6 3 25 0.032 97 3.7 0.9 1 21 243 263 243 267 0.90 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF407-201 - 2247 1.9e-13 50.0 206.6 4 25 1.2 3.7e+03 -1.3 0.2 12 22 455 465 452 465 0.87 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF407-201 - 2247 1.9e-13 50.0 206.6 5 25 0.00024 0.72 10.4 1.6 3 23 529 550 527 550 0.95 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF407-201 - 2247 1.9e-13 50.0 206.6 6 25 0.25 7.4e+02 0.9 2.6 1 22 556 577 556 580 0.88 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF407-201 - 2247 1.9e-13 50.0 206.6 7 25 0.91 2.7e+03 -0.8 0.1 15 23 601 610 598 610 0.89 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF407-201 - 2247 1.9e-13 50.0 206.6 8 25 0.0015 4.4 8.0 3.6 1 23 704 727 704 727 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF407-201 - 2247 1.9e-13 50.0 206.6 9 25 1.2 3.6e+03 -1.2 0.6 3 23 735 757 733 757 0.77 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF407-201 - 2247 1.9e-13 50.0 206.6 10 25 0.00085 2.6 8.7 1.1 2 23 850 872 850 872 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF407-201 - 2247 1.9e-13 50.0 206.6 11 25 0.25 7.5e+02 0.9 2.5 1 19 878 896 878 902 0.91 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF407-201 - 2247 1.9e-13 50.0 206.6 12 25 0.2 6e+02 1.2 3.3 2 23 1017 1039 1017 1039 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF407-201 - 2247 1.9e-13 50.0 206.6 13 25 0.55 1.6e+03 -0.1 0.4 1 22 1045 1066 1045 1069 0.86 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF407-201 - 2247 1.9e-13 50.0 206.6 14 25 0.03 89 3.8 0.0 2 23 1414 1436 1413 1436 0.93 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF407-201 - 2247 1.9e-13 50.0 206.6 15 25 1.1e-05 0.034 14.6 1.6 1 22 1443 1464 1443 1467 0.89 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF407-201 - 2247 1.9e-13 50.0 206.6 16 25 2.8e-05 0.083 13.4 0.3 1 23 1485 1508 1485 1508 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF407-201 - 2247 1.9e-13 50.0 206.6 17 25 0.004 12 6.6 1.9 2 23 1537 1560 1537 1560 0.74 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF407-201 - 2247 1.9e-13 50.0 206.6 18 25 0.0016 4.7 7.9 1.0 1 23 1566 1588 1566 1588 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF407-201 - 2247 1.9e-13 50.0 206.6 19 25 1.3e-05 0.039 14.4 2.2 1 23 1594 1617 1594 1617 0.94 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF407-201 - 2247 1.9e-13 50.0 206.6 20 25 1.5e-07 0.00045 20.5 2.0 1 23 1627 1649 1627 1649 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF407-201 - 2247 1.9e-13 50.0 206.6 21 25 0.00082 2.5 8.8 2.7 1 23 1655 1679 1655 1679 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF407-201 - 2247 1.9e-13 50.0 206.6 22 25 0.00071 2.1 8.9 0.9 2 23 1686 1707 1685 1707 0.95 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF407-201 - 2247 1.9e-13 50.0 206.6 23 25 9.7e-07 0.0029 18.0 3.4 1 23 1713 1735 1713 1735 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF407-201 - 2247 1.9e-13 50.0 206.6 24 25 0.038 1.1e+02 3.5 1.2 1 20 1741 1760 1741 1762 0.91 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF407-201 - 2247 1.9e-13 50.0 206.6 25 25 0.00061 1.8 9.2 0.2 1 23 1772 1795 1772 1795 0.96 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZNF407-201 - 2247 4.4e-09 36.4 193.1 1 25 6.8e-05 0.2 12.6 2.6 2 23 186 207 185 208 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF407-201 - 2247 4.4e-09 36.4 193.1 2 25 2.2 6.5e+03 -1.5 8.9 1 24 214 237 214 237 0.91 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF407-201 - 2247 4.4e-09 36.4 193.1 3 25 0.035 1.1e+02 4.1 0.4 1 20 243 262 243 265 0.71 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF407-201 - 2247 4.4e-09 36.4 193.1 4 25 0.0026 7.9 7.6 1.3 2 24 528 550 527 550 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF407-201 - 2247 4.4e-09 36.4 193.1 5 25 0.25 7.3e+02 1.5 0.7 1 20 556 575 556 579 0.77 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF407-201 - 2247 4.4e-09 36.4 193.1 6 25 0.0036 11 7.2 1.4 2 24 588 610 587 610 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF407-201 - 2247 4.4e-09 36.4 193.1 7 25 0.37 1.1e+03 0.9 0.1 1 22 614 635 614 637 0.89 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF407-201 - 2247 4.4e-09 36.4 193.1 8 25 0.019 56 5.0 2.7 1 24 704 727 704 727 0.84 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF407-201 - 2247 4.4e-09 36.4 193.1 9 25 0.034 1e+02 4.2 0.3 1 22 733 754 733 756 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF407-201 - 2247 4.4e-09 36.4 193.1 10 25 0.0028 8.3 7.6 0.9 2 24 850 872 849 872 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF407-201 - 2247 4.4e-09 36.4 193.1 11 25 0.04 1.2e+02 3.9 1.1 1 22 878 899 878 901 0.80 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF407-201 - 2247 4.4e-09 36.4 193.1 12 25 0.17 5.2e+02 2.0 3.8 2 24 1017 1039 1016 1039 0.82 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF407-201 - 2247 4.4e-09 36.4 193.1 13 25 0.89 2.7e+03 -0.2 0.1 1 22 1045 1066 1045 1068 0.87 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF407-201 - 2247 4.4e-09 36.4 193.1 14 25 0.61 1.8e+03 0.3 0.0 2 24 1414 1436 1413 1436 0.80 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF407-201 - 2247 4.4e-09 36.4 193.1 15 25 0.00033 0.99 10.4 1.1 1 21 1443 1463 1443 1465 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF407-201 - 2247 4.4e-09 36.4 193.1 16 25 0.00036 1.1 10.3 0.4 1 24 1485 1508 1485 1508 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF407-201 - 2247 4.4e-09 36.4 193.1 17 25 0.00019 0.57 11.2 1.4 2 23 1537 1560 1536 1561 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF407-201 - 2247 4.4e-09 36.4 193.1 18 25 0.006 18 6.5 0.7 1 23 1566 1588 1566 1589 0.88 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF407-201 - 2247 4.4e-09 36.4 193.1 19 25 0.00022 0.65 11.0 2.3 1 24 1594 1617 1594 1617 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF407-201 - 2247 4.4e-09 36.4 193.1 20 25 1.8e-06 0.0054 17.5 1.8 1 23 1627 1649 1627 1650 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF407-201 - 2247 4.4e-09 36.4 193.1 21 25 0.0028 8.2 7.6 2.1 1 23 1655 1679 1655 1680 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF407-201 - 2247 4.4e-09 36.4 193.1 22 25 0.071 2.1e+02 3.2 0.4 1 23 1685 1707 1685 1708 0.79 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF407-201 - 2247 4.4e-09 36.4 193.1 23 25 0.0023 6.9 7.8 2.4 1 23 1713 1735 1713 1736 0.75 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF407-201 - 2247 4.4e-09 36.4 193.1 24 25 0.011 32 5.7 1.1 1 21 1741 1761 1741 1762 0.77 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF407-201 - 2247 4.4e-09 36.4 193.1 25 25 0.0054 16 6.6 0.2 1 24 1772 1795 1772 1795 0.81 C2H2-type zinc finger # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF407-201.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF407-201.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF407-201.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF407-201.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF407-201.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:05:29 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZNF407-202 - 1660 2.7e-09 37.0 108.7 1 16 1.2 3e+03 -1.1 0.0 13 25 184 196 181 197 0.77 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF407-202 - 1660 2.7e-09 37.0 108.7 2 16 1.3 3.3e+03 -1.2 5.9 1 21 200 221 200 226 0.83 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF407-202 - 1660 2.7e-09 37.0 108.7 3 16 0.0035 9 6.9 0.8 4 22 232 251 229 254 0.87 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF407-202 - 1660 2.7e-09 37.0 108.7 4 16 0.089 2.3e+02 2.5 1.4 2 23 543 565 542 566 0.84 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF407-202 - 1660 2.7e-09 37.0 108.7 5 16 0.041 1e+02 3.6 1.7 1 24 602 624 602 626 0.74 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF407-202 - 1660 2.7e-09 37.0 108.7 6 16 0.025 64 4.2 1.3 10 24 699 714 693 716 0.83 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF407-202 - 1660 2.7e-09 37.0 108.7 7 16 0.0016 4.2 8.0 0.5 2 21 720 740 719 745 0.84 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF407-202 - 1660 2.7e-09 37.0 108.7 8 16 0.0019 4.9 7.7 2.8 1 26 864 890 864 890 0.86 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF407-202 - 1660 2.7e-09 37.0 108.7 9 16 3.1 7.9e+03 -2.4 0.2 2 11 894 905 893 906 0.70 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF407-202 - 1660 2.7e-09 37.0 108.7 10 16 1.1e-07 0.00028 21.2 0.9 2 25 1032 1056 1031 1057 0.86 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF407-202 - 1660 2.7e-09 37.0 108.7 11 16 5.6 1.4e+04 -3.2 0.0 13 21 1412 1420 1409 1421 0.76 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF407-202 - 1660 2.7e-09 37.0 108.7 12 16 3.9e-05 0.1 13.1 2.7 1 24 1428 1453 1428 1455 0.88 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF407-202 - 1660 2.7e-09 37.0 108.7 13 16 7 1.8e+04 -4.3 0.1 15 20 1486 1491 1481 1492 0.84 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF407-202 - 1660 2.7e-09 37.0 108.7 14 16 1.2 3.1e+03 -1.1 0.1 17 22 1539 1544 1501 1547 0.84 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF407-202 - 1660 2.7e-09 37.0 108.7 15 16 1.6e-08 4e-05 23.8 1.1 4 25 1556 1577 1553 1578 0.90 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF407-202 - 1660 2.7e-09 37.0 108.7 16 16 2.6e-05 0.066 13.7 0.7 3 25 1583 1605 1583 1605 0.94 Zinc-finger double domain # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF407-202.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF407-202.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF407-202.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF407-202.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF407-202.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:05:30 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZNF407-203 - 1814 5.4e-41 137.2 159.2 1 22 1.1 3.3e+03 -1.2 0.0 13 25 183 195 180 196 0.77 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF407-203 - 1814 5.4e-41 137.2 159.2 2 22 1.2 3.6e+03 -1.3 5.9 1 21 199 220 199 225 0.83 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF407-203 - 1814 5.4e-41 137.2 159.2 3 22 0.0033 10 6.8 0.8 4 22 231 250 228 253 0.87 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF407-203 - 1814 5.4e-41 137.2 159.2 4 22 0.084 2.5e+02 2.4 1.4 2 23 542 564 541 565 0.84 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF407-203 - 1814 5.4e-41 137.2 159.2 5 22 0.038 1.1e+02 3.4 1.7 1 24 601 623 601 625 0.74 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF407-203 - 1814 5.4e-41 137.2 159.2 6 22 0.023 70 4.1 1.3 10 24 698 713 692 715 0.83 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF407-203 - 1814 5.4e-41 137.2 159.2 7 22 0.0015 4.6 7.8 0.5 2 21 719 739 718 744 0.84 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF407-203 - 1814 5.4e-41 137.2 159.2 8 22 0.0018 5.5 7.6 2.8 1 26 863 889 863 889 0.86 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF407-203 - 1814 5.4e-41 137.2 159.2 9 22 2.9 8.7e+03 -2.5 0.2 2 11 893 904 892 905 0.70 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF407-203 - 1814 5.4e-41 137.2 159.2 10 22 1e-07 0.00031 21.0 0.9 2 25 1031 1055 1030 1056 0.86 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF407-203 - 1814 5.4e-41 137.2 159.2 11 22 5.3 1.6e+04 -3.3 0.0 13 21 1411 1419 1408 1420 0.76 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF407-203 - 1814 5.4e-41 137.2 159.2 12 22 3.7e-05 0.11 13.0 2.7 1 24 1427 1452 1427 1454 0.88 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF407-203 - 1814 5.4e-41 137.2 159.2 13 22 1.2 3.4e+03 -1.2 0.1 17 22 1538 1543 1500 1546 0.84 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF407-203 - 1814 5.4e-41 137.2 159.2 14 22 1.5e-08 4.4e-05 23.7 1.1 4 25 1555 1576 1552 1577 0.90 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF407-203 - 1814 5.4e-41 137.2 159.2 15 22 2.4e-05 0.073 13.5 0.7 3 25 1582 1604 1582 1604 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF407-203 - 1814 5.4e-41 137.2 159.2 16 22 0.0003 0.9 10.1 2.6 1 25 1608 1637 1606 1638 0.77 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF407-203 - 1814 5.4e-41 137.2 159.2 17 22 3.6e-10 1.1e-06 28.8 1.8 1 26 1641 1668 1641 1668 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF407-203 - 1814 5.4e-41 137.2 159.2 18 22 3.3e-07 0.00099 19.4 0.1 2 23 1672 1693 1671 1696 0.88 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF407-203 - 1814 5.4e-41 137.2 159.2 19 22 2.1e-10 6.3e-07 29.5 0.9 1 25 1699 1723 1699 1724 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF407-203 - 1814 5.4e-41 137.2 159.2 20 22 1.7e-09 5e-06 26.7 4.6 1 24 1727 1750 1727 1752 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF407-203 - 1814 5.4e-41 137.2 159.2 21 22 9.8e-07 0.0029 17.9 0.9 5 24 1762 1781 1755 1782 0.86 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF407-203 - 1814 5.4e-41 137.2 159.2 22 22 6 1.8e+04 -3.5 0.1 3 10 1788 1795 1787 1798 0.73 Zinc-finger double domain zf-H2C2_5 PF13909.6 26 ZNF407-203 - 1814 3.8e-16 58.5 157.5 1 20 0.18 5.4e+02 0.5 6.9 3 25 216 238 214 239 0.92 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 ZNF407-203 - 1814 3.8e-16 58.5 157.5 2 20 0.58 1.7e+03 -1.1 0.2 10 24 536 550 529 551 0.83 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 ZNF407-203 - 1814 3.8e-16 58.5 157.5 3 20 5e-05 0.15 11.9 3.1 3 20 558 575 556 580 0.91 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 ZNF407-203 - 1814 3.8e-16 58.5 157.5 4 20 3.9e-05 0.12 12.2 1.0 2 25 588 611 587 612 0.95 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 ZNF407-203 - 1814 3.8e-16 58.5 157.5 5 20 0.0011 3.2 7.6 2.0 1 21 704 724 704 728 0.91 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 ZNF407-203 - 1814 3.8e-16 58.5 157.5 6 20 1.4 4.3e+03 -2.4 0.7 10 22 742 754 735 757 0.72 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 ZNF407-203 - 1814 3.8e-16 58.5 157.5 7 20 0.00017 0.52 10.1 2.3 3 25 851 873 850 874 0.97 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 ZNF407-203 - 1814 3.8e-16 58.5 157.5 8 20 0.00031 0.92 9.3 4.2 3 25 880 902 878 904 0.85 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 ZNF407-203 - 1814 3.8e-16 58.5 157.5 9 20 2.8e-08 8.2e-05 22.3 3.9 1 26 1016 1041 1016 1041 0.96 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 ZNF407-203 - 1814 3.8e-16 58.5 157.5 10 20 0.00014 0.42 10.4 0.9 3 21 1047 1065 1045 1070 0.84 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 ZNF407-203 - 1814 3.8e-16 58.5 157.5 11 20 0.87 2.6e+03 -1.7 0.1 13 21 1455 1463 1454 1463 0.84 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 ZNF407-203 - 1814 3.8e-16 58.5 157.5 12 20 0.55 1.6e+03 -1.1 0.3 19 26 1556 1562 1555 1562 0.94 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 ZNF407-203 - 1814 3.8e-16 58.5 157.5 13 20 0.0058 17 5.2 0.1 1 24 1566 1588 1566 1590 0.92 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 ZNF407-203 - 1814 3.8e-16 58.5 157.5 14 20 2.2 6.6e+03 -3.0 1.5 13 21 1606 1614 1604 1618 0.52 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 ZNF407-203 - 1814 3.8e-16 58.5 157.5 15 20 0.025 74 3.2 1.3 3 26 1629 1651 1627 1651 0.84 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 ZNF407-203 - 1814 3.8e-16 58.5 157.5 16 20 0.13 3.8e+02 1.0 2.8 1 26 1655 1681 1655 1681 0.92 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 ZNF407-203 - 1814 3.8e-16 58.5 157.5 17 20 0.0018 5.5 6.8 0.1 3 26 1687 1709 1685 1709 0.95 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 ZNF407-203 - 1814 3.8e-16 58.5 157.5 18 20 1.4e-09 4.2e-06 26.4 2.3 1 26 1713 1737 1713 1737 0.98 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 ZNF407-203 - 1814 3.8e-16 58.5 157.5 19 20 1.4e-07 0.00041 20.1 0.8 1 26 1741 1764 1741 1764 0.97 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 ZNF407-203 - 1814 3.8e-16 58.5 157.5 20 20 0.001 3.1 7.6 0.0 1 24 1772 1795 1772 1796 0.95 C2H2-type zinc-finger domain zf-C2H2 PF00096.26 23 ZNF407-203 - 1814 7.4e-16 57.6 206.6 1 25 3.4e-05 0.1 13.1 2.3 2 23 186 207 185 207 0.95 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF407-203 - 1814 7.4e-16 57.6 206.6 2 25 1.2 3.5e+03 -1.2 8.7 1 23 214 237 214 237 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF407-203 - 1814 7.4e-16 57.6 206.6 3 25 0.026 77 4.0 0.9 1 21 243 263 243 267 0.90 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF407-203 - 1814 7.4e-16 57.6 206.6 4 25 0.99 3e+03 -1.0 0.2 12 22 455 465 452 465 0.87 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF407-203 - 1814 7.4e-16 57.6 206.6 5 25 0.00019 0.57 10.8 1.6 3 23 529 550 527 550 0.95 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF407-203 - 1814 7.4e-16 57.6 206.6 6 25 0.2 5.8e+02 1.3 2.6 1 22 556 577 556 580 0.88 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF407-203 - 1814 7.4e-16 57.6 206.6 7 25 0.71 2.1e+03 -0.5 0.1 15 23 601 610 596 610 0.90 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF407-203 - 1814 7.4e-16 57.6 206.6 8 25 0.0012 3.5 8.3 3.6 1 23 704 727 704 727 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF407-203 - 1814 7.4e-16 57.6 206.6 9 25 0.94 2.8e+03 -0.9 0.6 3 23 735 757 733 757 0.77 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF407-203 - 1814 7.4e-16 57.6 206.6 10 25 0.00068 2 9.0 1.1 2 23 850 872 850 872 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF407-203 - 1814 7.4e-16 57.6 206.6 11 25 0.2 5.9e+02 1.2 2.5 1 19 878 896 878 902 0.91 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF407-203 - 1814 7.4e-16 57.6 206.6 12 25 0.16 4.8e+02 1.5 3.3 2 23 1017 1039 1017 1039 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF407-203 - 1814 7.4e-16 57.6 206.6 13 25 0.43 1.3e+03 0.2 0.4 1 22 1045 1066 1045 1069 0.86 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF407-203 - 1814 7.4e-16 57.6 206.6 14 25 0.024 71 4.2 0.0 2 23 1414 1436 1413 1436 0.93 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF407-203 - 1814 7.4e-16 57.6 206.6 15 25 9.1e-06 0.027 14.9 1.6 1 22 1443 1464 1443 1467 0.89 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF407-203 - 1814 7.4e-16 57.6 206.6 16 25 2.2e-05 0.065 13.7 0.3 1 23 1485 1508 1485 1508 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF407-203 - 1814 7.4e-16 57.6 206.6 17 25 0.0032 9.6 6.9 1.9 2 23 1537 1560 1537 1560 0.74 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF407-203 - 1814 7.4e-16 57.6 206.6 18 25 0.0012 3.7 8.2 1.0 1 23 1566 1588 1566 1588 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF407-203 - 1814 7.4e-16 57.6 206.6 19 25 1e-05 0.031 14.7 2.2 1 23 1594 1617 1594 1617 0.94 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF407-203 - 1814 7.4e-16 57.6 206.6 20 25 1.2e-07 0.00036 20.8 2.0 1 23 1627 1649 1627 1649 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF407-203 - 1814 7.4e-16 57.6 206.6 21 25 0.00065 1.9 9.1 2.7 1 23 1655 1679 1655 1679 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF407-203 - 1814 7.4e-16 57.6 206.6 22 25 0.00056 1.7 9.3 0.9 2 23 1686 1707 1685 1707 0.95 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF407-203 - 1814 7.4e-16 57.6 206.6 23 25 7.7e-07 0.0023 18.3 3.4 1 23 1713 1735 1713 1735 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF407-203 - 1814 7.4e-16 57.6 206.6 24 25 0.03 90 3.8 1.2 1 20 1741 1760 1741 1762 0.91 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF407-203 - 1814 7.4e-16 57.6 206.6 25 25 0.00048 1.4 9.5 0.2 1 23 1772 1795 1772 1795 0.96 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZNF407-203 - 1814 1.3e-11 44.3 193.1 1 25 5.4e-05 0.16 12.9 2.6 2 23 186 207 185 208 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF407-203 - 1814 1.3e-11 44.3 193.1 2 25 1.7 5.1e+03 -1.1 8.9 1 24 214 237 214 237 0.91 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF407-203 - 1814 1.3e-11 44.3 193.1 3 25 0.028 83 4.4 0.4 1 20 243 262 243 265 0.71 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF407-203 - 1814 1.3e-11 44.3 193.1 4 25 0.0021 6.2 7.9 1.3 2 24 528 550 527 550 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF407-203 - 1814 1.3e-11 44.3 193.1 5 25 0.19 5.8e+02 1.8 0.7 1 20 556 575 556 579 0.77 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF407-203 - 1814 1.3e-11 44.3 193.1 6 25 0.0028 8.5 7.5 1.4 2 24 588 610 587 610 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF407-203 - 1814 1.3e-11 44.3 193.1 7 25 0.29 8.7e+02 1.3 0.1 1 22 614 635 614 637 0.89 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF407-203 - 1814 1.3e-11 44.3 193.1 8 25 0.015 44 5.3 2.7 1 24 704 727 704 727 0.84 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF407-203 - 1814 1.3e-11 44.3 193.1 9 25 0.026 79 4.5 0.3 1 22 733 754 733 756 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF407-203 - 1814 1.3e-11 44.3 193.1 10 25 0.0022 6.5 7.9 0.9 2 24 850 872 849 872 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF407-203 - 1814 1.3e-11 44.3 193.1 11 25 0.032 95 4.3 1.1 1 22 878 899 878 901 0.80 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF407-203 - 1814 1.3e-11 44.3 193.1 12 25 0.14 4.1e+02 2.3 3.8 2 24 1017 1039 1016 1039 0.82 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF407-203 - 1814 1.3e-11 44.3 193.1 13 25 0.7 2.1e+03 0.1 0.1 1 22 1045 1066 1045 1068 0.87 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF407-203 - 1814 1.3e-11 44.3 193.1 14 25 0.48 1.4e+03 0.6 0.0 2 24 1414 1436 1413 1436 0.80 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF407-203 - 1814 1.3e-11 44.3 193.1 15 25 0.00026 0.78 10.7 1.1 1 21 1443 1463 1443 1465 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF407-203 - 1814 1.3e-11 44.3 193.1 16 25 0.00028 0.84 10.6 0.4 1 24 1485 1508 1485 1508 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF407-203 - 1814 1.3e-11 44.3 193.1 17 25 0.00015 0.45 11.5 1.4 2 23 1537 1560 1536 1561 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF407-203 - 1814 1.3e-11 44.3 193.1 18 25 0.0047 14 6.8 0.7 1 23 1566 1588 1566 1589 0.88 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF407-203 - 1814 1.3e-11 44.3 193.1 19 25 0.00017 0.51 11.3 2.3 1 24 1594 1617 1594 1617 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF407-203 - 1814 1.3e-11 44.3 193.1 20 25 1.4e-06 0.0043 17.8 1.8 1 23 1627 1649 1627 1650 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF407-203 - 1814 1.3e-11 44.3 193.1 21 25 0.0022 6.5 7.9 2.1 1 23 1655 1679 1655 1680 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF407-203 - 1814 1.3e-11 44.3 193.1 22 25 0.056 1.7e+02 3.5 0.4 1 23 1685 1707 1685 1708 0.79 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF407-203 - 1814 1.3e-11 44.3 193.1 23 25 0.0018 5.4 8.1 2.4 1 23 1713 1735 1713 1736 0.75 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF407-203 - 1814 1.3e-11 44.3 193.1 24 25 0.0085 25 6.0 1.1 1 21 1741 1761 1741 1762 0.77 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF407-203 - 1814 1.3e-11 44.3 193.1 25 25 0.0043 13 7.0 0.2 1 24 1772 1795 1772 1795 0.81 C2H2-type zinc finger # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF407-203.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF407-203.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF407-203.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF407-203.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF407-203.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:05:30 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF407-204.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF407-204.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF407-204.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF407-204.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF407-204.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:05:31 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZNF407-205 - 119 5.4e-30 102.5 24.3 1 4 4.5e-08 6.8e-05 23.1 1.7 6 26 1 23 1 23 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF407-205 - 119 5.4e-30 102.5 24.3 2 4 2.1e-08 3.2e-05 24.2 0.1 2 24 27 49 26 51 0.88 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF407-205 - 119 5.4e-30 102.5 24.3 3 4 1.3e-11 2e-08 34.3 0.9 1 25 54 78 54 79 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF407-205 - 119 5.4e-30 102.5 24.3 4 4 1.3e-11 2e-08 34.3 3.7 1 24 82 105 82 106 0.97 Zinc-finger double domain zf-H2C2_5 PF13909.6 26 ZNF407-205 - 119 2.1e-12 46.6 27.3 1 4 0.0083 12 5.7 2.9 1 26 10 36 10 36 0.93 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 ZNF407-205 - 119 2.1e-12 46.6 27.3 2 4 0.00012 0.18 11.6 0.1 3 26 42 64 40 64 0.95 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 ZNF407-205 - 119 2.1e-12 46.6 27.3 3 4 9.1e-11 1.4e-07 31.2 2.3 1 26 68 92 68 92 0.98 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 ZNF407-205 - 119 2.1e-12 46.6 27.3 4 4 6.2e-05 0.093 12.5 2.3 1 9 96 104 96 104 0.94 C2H2-type zinc-finger domain zf-C2H2 PF00096.26 23 ZNF407-205 - 119 1.5e-10 41.0 30.4 1 4 4e-05 0.06 13.8 2.7 1 23 10 34 10 34 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF407-205 - 119 1.5e-10 41.0 30.4 2 4 3.7e-05 0.055 14.0 0.9 2 23 41 62 40 62 0.95 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF407-205 - 119 1.5e-10 41.0 30.4 3 4 4.9e-08 7.4e-05 23.0 3.4 1 23 68 90 68 90 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF407-205 - 119 1.5e-10 41.0 30.4 4 4 0.0045 6.7 7.4 1.6 1 10 96 105 96 110 0.86 Zinc finger, C2H2 type # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF407-205.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF407-205.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF407-205.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF407-205.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF407-205.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:05:31 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF407-206.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF407-206.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF407-206.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF407-206.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF407-206.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:05:31 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZNF407-207 - 1660 2.7e-09 37.0 108.7 1 16 1.2 3e+03 -1.1 0.0 13 25 184 196 181 197 0.77 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF407-207 - 1660 2.7e-09 37.0 108.7 2 16 1.3 3.3e+03 -1.2 5.9 1 21 200 221 200 226 0.83 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF407-207 - 1660 2.7e-09 37.0 108.7 3 16 0.0035 9 6.9 0.8 4 22 232 251 229 254 0.87 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF407-207 - 1660 2.7e-09 37.0 108.7 4 16 0.089 2.3e+02 2.5 1.4 2 23 543 565 542 566 0.84 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF407-207 - 1660 2.7e-09 37.0 108.7 5 16 0.041 1e+02 3.6 1.7 1 24 602 624 602 626 0.74 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF407-207 - 1660 2.7e-09 37.0 108.7 6 16 0.025 64 4.2 1.3 10 24 699 714 693 716 0.83 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF407-207 - 1660 2.7e-09 37.0 108.7 7 16 0.0016 4.2 8.0 0.5 2 21 720 740 719 745 0.84 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF407-207 - 1660 2.7e-09 37.0 108.7 8 16 0.0019 4.9 7.7 2.8 1 26 864 890 864 890 0.86 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF407-207 - 1660 2.7e-09 37.0 108.7 9 16 3.1 7.9e+03 -2.4 0.2 2 11 894 905 893 906 0.70 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF407-207 - 1660 2.7e-09 37.0 108.7 10 16 1.1e-07 0.00028 21.2 0.9 2 25 1032 1056 1031 1057 0.86 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF407-207 - 1660 2.7e-09 37.0 108.7 11 16 5.6 1.4e+04 -3.2 0.0 13 21 1412 1420 1409 1421 0.76 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF407-207 - 1660 2.7e-09 37.0 108.7 12 16 3.9e-05 0.1 13.1 2.7 1 24 1428 1453 1428 1455 0.88 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF407-207 - 1660 2.7e-09 37.0 108.7 13 16 7 1.8e+04 -4.3 0.1 15 20 1486 1491 1481 1492 0.84 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF407-207 - 1660 2.7e-09 37.0 108.7 14 16 1.2 3.1e+03 -1.1 0.1 17 22 1539 1544 1501 1547 0.84 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF407-207 - 1660 2.7e-09 37.0 108.7 15 16 1.6e-08 4e-05 23.8 1.1 4 25 1556 1577 1553 1578 0.90 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF407-207 - 1660 2.7e-09 37.0 108.7 16 16 2.6e-05 0.066 13.7 0.7 3 25 1583 1605 1583 1605 0.94 Zinc-finger double domain # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF407-207.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF407-207.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF407-207.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF407-207.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF407-207.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:05:32 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZNF407-208 - 109 8.4e-30 101.9 22.9 1 4 3.9e-08 5.9e-05 23.3 1.7 6 26 1 23 1 23 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF407-208 - 109 8.4e-30 101.9 22.9 2 4 1.8e-08 2.7e-05 24.4 0.1 2 24 27 49 26 51 0.88 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF407-208 - 109 8.4e-30 101.9 22.9 3 4 1.1e-11 1.7e-08 34.5 0.9 1 25 54 78 54 79 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF407-208 - 109 8.4e-30 101.9 22.9 4 4 3.8e-11 5.6e-08 32.9 2.4 1 23 82 104 82 105 0.95 Zinc-finger double domain zf-H2C2_5 PF13909.6 26 ZNF407-208 - 109 1.1e-11 44.2 32.2 1 5 4.5 6.8e+03 -3.0 0.1 20 26 1 6 1 6 0.72 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 ZNF407-208 - 109 1.1e-11 44.2 32.2 2 5 0.0071 11 5.9 2.9 1 26 10 36 10 36 0.93 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 ZNF407-208 - 109 1.1e-11 44.2 32.2 3 5 0.00011 0.16 11.8 0.1 3 26 42 64 40 64 0.95 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 ZNF407-208 - 109 1.1e-11 44.2 32.2 4 5 7.8e-11 1.2e-07 31.4 2.3 1 26 68 92 68 92 0.98 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 ZNF407-208 - 109 1.1e-11 44.2 32.2 5 5 1.6e-05 0.024 14.4 2.3 1 10 96 105 96 107 0.93 C2H2-type zinc-finger domain zf-C2H2 PF00096.26 23 ZNF407-208 - 109 9.7e-11 41.5 27.6 1 4 3.4e-05 0.051 14.0 2.7 1 23 10 34 10 34 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF407-208 - 109 9.7e-11 41.5 27.6 2 4 3.2e-05 0.047 14.2 0.9 2 23 41 62 40 62 0.95 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF407-208 - 109 9.7e-11 41.5 27.6 3 4 4.3e-08 6.4e-05 23.2 3.4 1 23 68 90 68 90 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF407-208 - 109 9.7e-11 41.5 27.6 4 4 0.015 22 5.8 0.4 1 8 96 103 96 108 0.83 Zinc finger, C2H2 type # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF407-208.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF407-208.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF407-208.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF407-208.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF407-208.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:05:32 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZNF408-201 - 720 3.5e-54 178.9 62.4 1 11 0.018 11 6.6 0.1 13 25 351 363 345 364 0.81 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF408-201 - 720 3.5e-54 178.9 62.4 2 11 2.2e-06 0.0014 19.0 4.4 1 25 367 391 367 392 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF408-201 - 720 3.5e-54 178.9 62.4 3 11 3.2e-08 2e-05 24.8 0.2 2 26 396 420 395 420 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF408-201 - 720 3.5e-54 178.9 62.4 4 11 5.2e-07 0.00032 21.0 0.0 1 25 423 447 423 448 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF408-201 - 720 3.5e-54 178.9 62.4 5 11 0.025 15 6.2 0.9 1 21 451 474 451 475 0.79 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF408-201 - 720 3.5e-54 178.9 62.4 6 11 4.4e-11 2.7e-08 33.9 1.1 1 25 482 506 482 507 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF408-201 - 720 3.5e-54 178.9 62.4 7 11 1.8e-10 1.1e-07 31.9 0.5 1 24 510 533 510 535 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF408-201 - 720 3.5e-54 178.9 62.4 8 11 1.3e-06 0.00082 19.7 0.2 2 23 539 559 538 560 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF408-201 - 720 3.5e-54 178.9 62.4 9 11 1.2e-08 7.7e-06 26.1 0.3 2 25 566 589 565 589 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF408-201 - 720 3.5e-54 178.9 62.4 10 11 1e-07 6.4e-05 23.2 1.3 2 24 594 616 593 617 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF408-201 - 720 3.5e-54 178.9 62.4 11 11 0.12 74 4.0 0.1 1 14 621 634 621 636 0.89 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZNF408-201 - 720 6.8e-41 136.5 61.6 1 10 0.0002 0.13 12.8 2.8 1 23 353 375 353 375 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF408-201 - 720 6.8e-41 136.5 61.6 2 10 3.2e-06 0.002 18.5 0.3 2 23 382 403 381 403 0.94 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF408-201 - 720 6.8e-41 136.5 61.6 3 10 7e-06 0.0043 17.4 0.1 1 23 409 431 409 431 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF408-201 - 720 6.8e-41 136.5 61.6 4 10 1.3e-06 0.00081 19.7 0.5 1 23 437 459 437 459 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF408-201 - 720 6.8e-41 136.5 61.6 5 10 3.4e-07 0.00021 21.6 0.4 2 23 469 490 468 490 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF408-201 - 720 6.8e-41 136.5 61.6 6 10 2.5e-07 0.00016 22.0 1.2 2 23 497 518 496 518 0.95 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF408-201 - 720 6.8e-41 136.5 61.6 7 10 0.00021 0.13 12.8 0.3 1 23 524 546 524 546 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF408-201 - 720 6.8e-41 136.5 61.6 8 10 1.9e-05 0.012 16.1 1.0 3 23 553 573 551 573 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF408-201 - 720 6.8e-41 136.5 61.6 9 10 5.7e-06 0.0035 17.7 0.5 1 23 579 601 579 601 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF408-201 - 720 6.8e-41 136.5 61.6 10 10 4.6e-06 0.0029 18.0 0.5 1 23 607 629 607 629 0.98 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZNF408-201 - 720 1.6e-36 121.8 61.6 1 10 0.0022 1.4 10.0 3.1 1 23 353 375 353 376 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF408-201 - 720 1.6e-36 121.8 61.6 2 10 4.2e-06 0.0026 18.4 0.5 1 23 381 403 381 404 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF408-201 - 720 1.6e-36 121.8 61.6 3 10 9.2e-05 0.057 14.3 0.2 1 23 409 431 409 432 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF408-201 - 720 1.6e-36 121.8 61.6 4 10 1.9e-05 0.012 16.4 0.4 1 23 437 459 437 460 0.97 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF408-201 - 720 1.6e-36 121.8 61.6 5 10 2.6e-06 0.0016 19.1 0.4 2 23 469 490 468 491 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF408-201 - 720 1.6e-36 121.8 61.6 6 10 3.3e-06 0.002 18.8 0.7 1 23 496 518 496 519 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF408-201 - 720 1.6e-36 121.8 61.6 7 10 1.6e-05 0.0096 16.7 0.4 1 23 524 546 524 547 0.97 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF408-201 - 720 1.6e-36 121.8 61.6 8 10 0.00011 0.065 14.1 1.0 2 23 552 573 551 574 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF408-201 - 720 1.6e-36 121.8 61.6 9 10 1.6e-06 0.00097 19.8 0.4 1 23 579 601 579 602 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF408-201 - 720 1.6e-36 121.8 61.6 10 10 8.7e-05 0.054 14.4 0.4 1 23 607 629 607 630 0.96 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF408-201 - 720 1.3e-18 66.5 36.6 1 10 0.05 31 4.7 0.1 1 11 352 362 352 364 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF408-201 - 720 1.3e-18 66.5 36.6 2 10 0.00023 0.14 12.2 0.9 2 25 381 404 381 406 0.85 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF408-201 - 720 1.3e-18 66.5 36.6 3 10 0.00062 0.38 10.8 0.1 2 20 409 427 409 431 0.95 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF408-201 - 720 1.3e-18 66.5 36.6 4 10 1.5e-05 0.0092 16.0 0.2 2 24 437 459 437 461 0.95 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF408-201 - 720 1.3e-18 66.5 36.6 5 10 0.038 23 5.1 0.0 4 24 470 490 469 493 0.92 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF408-201 - 720 1.3e-18 66.5 36.6 6 10 0.0051 3.2 7.9 0.4 2 24 496 518 496 521 0.92 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF408-201 - 720 1.3e-18 66.5 36.6 7 10 0.0071 4.4 7.4 0.0 2 24 524 546 524 549 0.95 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF408-201 - 720 1.3e-18 66.5 36.6 8 10 0.042 26 5.0 0.1 1 11 550 560 550 573 0.87 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF408-201 - 720 1.3e-18 66.5 36.6 9 10 0.0011 0.66 10.0 0.2 2 25 579 602 579 603 0.95 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF408-201 - 720 1.3e-18 66.5 36.6 10 10 0.013 8 6.6 0.1 2 26 607 631 607 632 0.94 C2H2-type zinc finger zf-C2H2_jaz PF12171.8 27 ZNF408-201 - 720 4.4e-18 65.1 3.3 1 10 8.5 5.3e+03 -2.1 0.1 2 11 353 362 352 362 0.86 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF408-201 - 720 4.4e-18 65.1 3.3 2 10 6.5e-06 0.004 17.4 0.1 4 24 383 403 380 404 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF408-201 - 720 4.4e-18 65.1 3.3 3 10 0.00028 0.17 12.2 0.0 2 21 409 428 408 429 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF408-201 - 720 4.4e-18 65.1 3.3 4 10 0.11 65 4.0 0.0 2 25 437 460 436 460 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF408-201 - 720 4.4e-18 65.1 3.3 5 10 0.018 11 6.4 0.0 4 22 470 488 469 488 0.96 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF408-201 - 720 4.4e-18 65.1 3.3 6 10 0.22 1.3e+02 3.0 0.0 4 22 498 516 495 516 0.88 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF408-201 - 720 4.4e-18 65.1 3.3 7 10 3.8 2.4e+03 -1.0 0.4 2 8 524 530 523 530 0.85 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF408-201 - 720 4.4e-18 65.1 3.3 8 10 0.03 19 5.7 0.0 4 22 553 571 551 571 0.96 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF408-201 - 720 4.4e-18 65.1 3.3 9 10 0.25 1.5e+02 2.8 0.0 2 24 579 601 578 602 0.89 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF408-201 - 720 4.4e-18 65.1 3.3 10 10 0.25 1.5e+02 2.8 0.0 2 24 607 629 606 630 0.90 Zinc-finger double-stranded RNA-binding zf-C2H2_11 PF16622.5 29 ZNF408-201 - 720 2.1e-11 43.4 45.8 1 9 0.24 1.5e+02 2.2 3.7 5 26 353 374 352 379 0.90 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF408-201 - 720 2.1e-11 43.4 45.8 2 9 0.00035 0.22 11.3 0.3 7 24 383 400 381 401 0.95 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF408-201 - 720 2.1e-11 43.4 45.8 3 9 4.9 3e+03 -1.9 0.0 7 23 411 427 410 431 0.81 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF408-201 - 720 2.1e-11 43.4 45.8 4 9 0.0028 1.7 8.5 0.2 7 24 439 456 437 458 0.94 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF408-201 - 720 2.1e-11 43.4 45.8 5 9 0.00049 0.3 10.9 0.1 5 25 468 488 466 490 0.91 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF408-201 - 720 2.1e-11 43.4 45.8 6 9 0.077 47 3.9 2.1 7 25 498 516 496 518 0.92 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF408-201 - 720 2.1e-11 43.4 45.8 7 9 0.13 78 3.2 0.1 5 25 524 544 522 546 0.89 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF408-201 - 720 2.1e-11 43.4 45.8 8 9 5.4e-05 0.033 13.9 0.2 7 24 581 598 579 599 0.95 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF408-201 - 720 2.1e-11 43.4 45.8 9 9 3.2e-05 0.02 14.7 0.3 5 23 607 625 604 629 0.93 zinc-finger C2H2-type zf-met PF12874.7 25 ZNF408-201 - 720 1.2e-08 35.0 8.2 1 5 2.9e-05 0.018 15.4 0.5 3 24 383 404 381 404 0.93 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF408-201 - 720 1.2e-08 35.0 8.2 2 5 0.0041 2.5 8.6 0.0 3 21 470 488 469 488 0.97 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF408-201 - 720 1.2e-08 35.0 8.2 3 5 0.52 3.2e+02 1.9 0.0 3 21 498 516 496 516 0.92 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF408-201 - 720 1.2e-08 35.0 8.2 4 5 0.08 49 4.5 0.0 3 21 553 571 551 571 0.94 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF408-201 - 720 1.2e-08 35.0 8.2 5 5 0.28 1.8e+02 2.7 0.0 1 23 607 629 607 630 0.90 Zinc-finger of C2H2 type zf-Di19 PF05605.12 54 ZNF408-201 - 720 1.6e-08 34.7 39.4 1 7 3.3 2e+03 -0.8 2.7 3 49 353 400 351 405 0.62 Drought induced 19 protein (Di19), zinc-binding zf-Di19 PF05605.12 54 ZNF408-201 - 720 1.6e-08 34.7 39.4 2 7 0.022 14 6.1 2.4 3 38 409 443 407 460 0.76 Drought induced 19 protein (Di19), zinc-binding zf-Di19 PF05605.12 54 ZNF408-201 - 720 1.6e-08 34.7 39.4 3 7 0.0012 0.75 10.1 1.5 3 52 437 490 435 492 0.75 Drought induced 19 protein (Di19), zinc-binding zf-Di19 PF05605.12 54 ZNF408-201 - 720 1.6e-08 34.7 39.4 4 7 2.7e-05 0.016 15.4 1.7 4 52 469 518 466 520 0.82 Drought induced 19 protein (Di19), zinc-binding zf-Di19 PF05605.12 54 ZNF408-201 - 720 1.6e-08 34.7 39.4 5 7 7.1e-05 0.044 14.1 1.9 3 49 496 543 494 543 0.77 Drought induced 19 protein (Di19), zinc-binding zf-Di19 PF05605.12 54 ZNF408-201 - 720 1.6e-08 34.7 39.4 6 7 1.9e-05 0.012 15.9 3.1 3 43 524 562 522 574 0.78 Drought induced 19 protein (Di19), zinc-binding zf-Di19 PF05605.12 54 ZNF408-201 - 720 1.6e-08 34.7 39.4 7 7 7.4e-06 0.0046 17.2 0.5 3 47 579 624 577 630 0.73 Drought induced 19 protein (Di19), zinc-binding # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF408-201.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF408-201.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF408-201.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF408-201.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF408-201.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:05:33 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF408-202.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF408-202.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF408-202.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF408-202.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF408-202.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:05:33 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF408-203.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF408-203.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF408-203.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF408-203.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF408-203.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:05:33 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF408-204.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF408-204.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF408-204.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF408-204.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF408-204.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:05:34 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF408-205.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF408-205.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF408-205.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF408-205.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF408-205.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:05:34 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZNF41-201 - 779 8.3e-122 392.7 124.6 1 19 0.0013 0.89 10.1 1.1 5 24 261 280 257 282 0.86 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF41-201 - 779 8.3e-122 392.7 124.6 2 19 0.01 7.1 7.3 0.3 2 24 286 308 285 310 0.87 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF41-201 - 779 8.3e-122 392.7 124.6 3 19 7.1e-05 0.049 14.1 0.5 10 25 322 337 316 337 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF41-201 - 779 8.3e-122 392.7 124.6 4 19 1.7e-10 1.2e-07 31.8 0.5 1 24 341 364 341 366 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF41-201 - 779 8.3e-122 392.7 124.6 5 19 3.5e-12 2.4e-09 37.2 0.2 2 25 370 393 369 394 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF41-201 - 779 8.3e-122 392.7 124.6 6 19 9.7e-10 6.7e-07 29.5 1.2 2 26 398 422 397 422 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF41-201 - 779 8.3e-122 392.7 124.6 7 19 1.9e-10 1.3e-07 31.7 0.0 1 24 425 448 425 450 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF41-201 - 779 8.3e-122 392.7 124.6 8 19 4.7e-11 3.2e-08 33.6 2.6 1 26 453 478 453 478 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF41-201 - 779 8.3e-122 392.7 124.6 9 19 6.6e-08 4.5e-05 23.7 2.4 5 26 485 506 482 506 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF41-201 - 779 8.3e-122 392.7 124.6 10 19 3.6e-10 2.5e-07 30.8 0.4 1 25 509 533 509 534 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF41-201 - 779 8.3e-122 392.7 124.6 11 19 2.8e-10 2e-07 31.1 0.5 1 24 537 560 537 561 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF41-201 - 779 8.3e-122 392.7 124.6 12 19 1.5e-07 0.0001 22.6 0.7 2 24 566 588 565 590 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF41-201 - 779 8.3e-122 392.7 124.6 13 19 2.4e-11 1.6e-08 34.6 0.1 2 24 594 616 593 618 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF41-201 - 779 8.3e-122 392.7 124.6 14 19 3.9e-08 2.7e-05 24.4 6.0 4 26 624 646 621 646 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF41-201 - 779 8.3e-122 392.7 124.6 15 19 6.1e-06 0.0042 17.4 0.1 2 25 650 673 649 674 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF41-201 - 779 8.3e-122 392.7 124.6 16 19 5.7e-09 3.9e-06 27.0 0.4 1 25 677 701 677 701 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF41-201 - 779 8.3e-122 392.7 124.6 17 19 2.1e-09 1.5e-06 28.4 0.9 2 24 706 728 705 730 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF41-201 - 779 8.3e-122 392.7 124.6 18 19 4.8e-09 3.3e-06 27.3 0.2 2 25 734 757 733 758 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF41-201 - 779 8.3e-122 392.7 124.6 19 19 0.0044 3.1 8.4 0.5 1 16 761 776 761 776 0.93 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZNF41-201 - 779 1.8e-98 317.8 131.8 1 17 1.4e-06 0.00093 19.5 1.5 1 23 271 293 271 293 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF41-201 - 779 1.8e-98 317.8 131.8 2 17 3.5e-07 0.00024 21.4 0.6 1 23 327 349 327 349 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF41-201 - 779 1.8e-98 317.8 131.8 3 17 2.2e-08 1.5e-05 25.1 1.2 1 23 355 377 355 377 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF41-201 - 779 1.8e-98 317.8 131.8 4 17 2.9e-08 2e-05 24.8 0.3 1 23 383 405 383 405 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF41-201 - 779 1.8e-98 317.8 131.8 5 17 2.4e-09 1.7e-06 28.2 0.5 1 23 411 433 411 433 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF41-201 - 779 1.8e-98 317.8 131.8 6 17 1.5e-08 1e-05 25.7 1.1 1 23 439 461 439 461 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF41-201 - 779 1.8e-98 317.8 131.8 7 17 3.8e-09 2.6e-06 27.6 2.4 1 23 467 489 467 489 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF41-201 - 779 1.8e-98 317.8 131.8 8 17 3.2e-08 2.2e-05 24.7 3.0 1 23 495 517 495 517 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF41-201 - 779 1.8e-98 317.8 131.8 9 17 1.8e-09 1.2e-06 28.6 0.3 1 23 523 545 523 545 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF41-201 - 779 1.8e-98 317.8 131.8 10 17 8.2e-06 0.0057 17.1 0.5 1 23 551 573 551 573 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF41-201 - 779 1.8e-98 317.8 131.8 11 17 5.9e-09 4.1e-06 26.9 0.3 1 23 579 601 579 601 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF41-201 - 779 1.8e-98 317.8 131.8 12 17 2.5e-08 1.8e-05 25.0 1.4 1 23 607 629 607 629 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF41-201 - 779 1.8e-98 317.8 131.8 13 17 6.9e-09 4.7e-06 26.8 3.1 1 23 635 657 635 657 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF41-201 - 779 1.8e-98 317.8 131.8 14 17 1.6e-07 0.00011 22.4 0.1 3 23 665 685 664 685 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF41-201 - 779 1.8e-98 317.8 131.8 15 17 1.9e-06 0.0013 19.1 0.5 1 23 691 713 691 713 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF41-201 - 779 1.8e-98 317.8 131.8 16 17 3.4e-06 0.0024 18.3 0.1 1 23 719 741 719 741 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF41-201 - 779 1.8e-98 317.8 131.8 17 17 2.9e-08 2e-05 24.8 0.7 1 23 747 769 747 769 0.98 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZNF41-201 - 779 2.5e-49 161.6 121.5 1 17 0.003 2.1 9.4 1.0 1 23 271 293 271 294 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF41-201 - 779 2.5e-49 161.6 121.5 2 17 1.5e-05 0.01 16.6 0.5 1 23 327 349 327 350 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF41-201 - 779 2.5e-49 161.6 121.5 3 17 9.1e-06 0.0063 17.3 1.1 1 23 355 377 355 378 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF41-201 - 779 2.5e-49 161.6 121.5 4 17 4.3e-06 0.0029 18.3 0.3 1 23 383 405 383 406 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF41-201 - 779 2.5e-49 161.6 121.5 5 17 2.2e-05 0.015 16.1 0.4 1 23 411 433 411 434 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF41-201 - 779 2.5e-49 161.6 121.5 6 17 0.0012 0.82 10.7 0.8 1 23 439 461 439 462 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF41-201 - 779 2.5e-49 161.6 121.5 7 17 1.8e-05 0.013 16.3 1.9 1 23 467 489 467 490 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF41-201 - 779 2.5e-49 161.6 121.5 8 17 2.1e-05 0.015 16.1 1.6 1 23 495 517 495 518 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF41-201 - 779 2.5e-49 161.6 121.5 9 17 1.3e-05 0.0088 16.8 0.3 1 23 523 545 523 546 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF41-201 - 779 2.5e-49 161.6 121.5 10 17 0.0054 3.7 8.6 0.4 1 23 551 573 551 574 0.86 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF41-201 - 779 2.5e-49 161.6 121.5 11 17 5.8e-05 0.04 14.8 0.3 1 23 579 601 579 602 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF41-201 - 779 2.5e-49 161.6 121.5 12 17 0.00025 0.17 12.8 1.3 1 23 607 629 607 630 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF41-201 - 779 2.5e-49 161.6 121.5 13 17 2.2e-05 0.015 16.1 2.7 1 23 635 657 635 658 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF41-201 - 779 2.5e-49 161.6 121.5 14 17 0.00027 0.19 12.7 0.1 2 23 664 685 663 686 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF41-201 - 779 2.5e-49 161.6 121.5 15 17 0.00018 0.12 13.2 0.4 1 23 691 713 691 714 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF41-201 - 779 2.5e-49 161.6 121.5 16 17 0.0012 0.8 10.7 0.2 1 23 719 741 719 742 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF41-201 - 779 2.5e-49 161.6 121.5 17 17 1e-05 0.0069 17.1 0.6 1 23 747 769 747 770 0.96 C2H2-type zinc finger KRAB PF01352.27 42 ZNF41-201 - 779 1.9e-23 81.8 0.3 1 1 5.7e-26 3.9e-23 80.8 0.3 1 42 26 67 26 67 0.99 KRAB box Zn-ribbon_8 PF09723.10 40 ZNF41-201 - 779 2.2e-22 78.9 77.9 1 13 0.46 3.2e+02 1.6 0.3 6 16 271 281 253 306 0.67 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF41-201 - 779 2.2e-22 78.9 77.9 2 13 1.4e-05 0.0099 16.0 0.8 6 34 327 362 326 368 0.90 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF41-201 - 779 2.2e-22 78.9 77.9 3 13 0.00032 0.22 11.7 5.6 6 38 383 422 382 423 0.88 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF41-201 - 779 2.2e-22 78.9 77.9 4 13 3.1e-05 0.021 14.9 2.4 6 34 411 446 410 452 0.87 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF41-201 - 779 2.2e-22 78.9 77.9 5 13 0.00038 0.26 11.4 3.1 6 38 439 478 437 479 0.89 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF41-201 - 779 2.2e-22 78.9 77.9 6 13 5.5e-06 0.0038 17.3 2.5 6 34 467 502 465 508 0.91 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF41-201 - 779 2.2e-22 78.9 77.9 7 13 6.8e-05 0.047 13.8 2.4 6 35 495 531 494 535 0.90 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF41-201 - 779 2.2e-22 78.9 77.9 8 13 0.00024 0.17 12.0 1.8 6 34 523 558 522 561 0.92 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF41-201 - 779 2.2e-22 78.9 77.9 9 13 4e-07 0.00028 21.0 1.5 6 34 579 614 578 619 0.91 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF41-201 - 779 2.2e-22 78.9 77.9 10 13 3.9e-05 0.027 14.6 3.9 6 35 635 671 634 675 0.91 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF41-201 - 779 2.2e-22 78.9 77.9 11 13 6e-05 0.041 14.0 2.2 6 34 691 726 690 732 0.87 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF41-201 - 779 2.2e-22 78.9 77.9 12 13 0.0042 2.9 8.1 4.0 6 34 719 754 718 760 0.84 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF41-201 - 779 2.2e-22 78.9 77.9 13 13 0.026 18 5.6 0.3 6 20 747 767 745 774 0.75 Zinc ribbon domain zf-C2H2_6 PF13912.6 27 ZNF41-201 - 779 6.3e-16 57.9 112.1 1 17 1.3 9.1e+02 0.0 0.2 2 7 271 276 270 281 0.90 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF41-201 - 779 6.3e-16 57.9 112.1 2 17 0.00058 0.4 10.7 0.6 2 24 327 349 327 352 0.87 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF41-201 - 779 6.3e-16 57.9 112.1 3 17 0.0035 2.4 8.3 0.6 2 11 355 364 355 377 0.86 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF41-201 - 779 6.3e-16 57.9 112.1 4 17 0.0006 0.42 10.7 0.8 2 24 383 405 383 408 0.82 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF41-201 - 779 6.3e-16 57.9 112.1 5 17 2.6e-06 0.0018 18.2 0.9 1 24 410 433 410 436 0.92 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF41-201 - 779 6.3e-16 57.9 112.1 6 17 1.9 1.3e+03 -0.4 0.2 2 11 439 448 439 448 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF41-201 - 779 6.3e-16 57.9 112.1 7 17 0.012 8.3 6.5 1.4 2 12 467 477 467 479 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF41-201 - 779 6.3e-16 57.9 112.1 8 17 7.7e-07 0.00053 19.9 1.5 2 24 495 517 495 520 0.95 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF41-201 - 779 6.3e-16 57.9 112.1 9 17 1.9e-05 0.013 15.5 0.5 2 24 523 545 523 548 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF41-201 - 779 6.3e-16 57.9 112.1 10 17 0.39 2.7e+02 1.7 0.4 2 11 551 560 551 560 0.95 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF41-201 - 779 6.3e-16 57.9 112.1 11 17 0.045 31 4.7 1.0 1 11 578 588 578 588 0.95 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF41-201 - 779 6.3e-16 57.9 112.1 12 17 0.018 13 6.0 0.2 2 11 607 616 607 616 0.95 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF41-201 - 779 6.3e-16 57.9 112.1 13 17 0.55 3.8e+02 1.2 2.7 2 13 635 646 635 658 0.78 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF41-201 - 779 6.3e-16 57.9 112.1 14 17 0.0069 4.8 7.3 0.1 3 24 664 685 664 688 0.88 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF41-201 - 779 6.3e-16 57.9 112.1 15 17 0.17 1.2e+02 2.9 0.4 2 13 691 702 691 716 0.73 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF41-201 - 779 6.3e-16 57.9 112.1 16 17 0.0093 6.4 6.9 1.4 1 11 718 728 718 728 0.95 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF41-201 - 779 6.3e-16 57.9 112.1 17 17 0.0042 2.9 8.0 0.6 2 25 747 770 747 772 0.90 C2H2-type zinc finger ADK_lid PF05191.14 36 ZNF41-201 - 779 1.2e-09 37.9 40.1 1 7 2.4e-06 0.0017 18.3 0.3 3 36 328 369 327 369 0.82 Adenylate kinase, active site lid ADK_lid PF05191.14 36 ZNF41-201 - 779 1.2e-09 37.9 40.1 2 7 0.011 7.2 6.7 1.1 4 34 413 451 383 452 0.80 Adenylate kinase, active site lid ADK_lid PF05191.14 36 ZNF41-201 - 779 1.2e-09 37.9 40.1 3 7 0.0054 3.7 7.6 1.3 4 34 469 507 467 510 0.79 Adenylate kinase, active site lid ADK_lid PF05191.14 36 ZNF41-201 - 779 1.2e-09 37.9 40.1 4 7 0.055 38 4.4 0.6 3 32 524 561 523 564 0.71 Adenylate kinase, active site lid ADK_lid PF05191.14 36 ZNF41-201 - 779 1.2e-09 37.9 40.1 5 7 0.0021 1.4 8.9 0.0 4 34 581 619 579 620 0.84 Adenylate kinase, active site lid ADK_lid PF05191.14 36 ZNF41-201 - 779 1.2e-09 37.9 40.1 6 7 0.0065 4.5 7.3 2.4 4 35 637 676 635 676 0.78 Adenylate kinase, active site lid ADK_lid PF05191.14 36 ZNF41-201 - 779 1.2e-09 37.9 40.1 7 7 0.04 27 4.8 0.1 4 30 721 755 691 760 0.62 Adenylate kinase, active site lid zf_UBZ PF18439.1 32 ZNF41-201 - 779 2.3e-08 33.5 73.3 1 17 1.1 7.6e+02 -0.2 0.1 3 9 271 277 269 290 0.74 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF41-201 - 779 2.3e-08 33.5 73.3 2 17 0.015 10 5.8 0.1 3 15 327 339 325 346 0.76 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF41-201 - 779 2.3e-08 33.5 73.3 3 17 0.03 20 4.8 0.2 3 12 355 364 353 368 0.88 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF41-201 - 779 2.3e-08 33.5 73.3 4 17 0.0061 4.2 7.1 0.2 3 18 383 399 381 402 0.80 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF41-201 - 779 2.3e-08 33.5 73.3 5 17 0.048 33 4.2 0.1 2 12 410 420 409 430 0.83 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF41-201 - 779 2.3e-08 33.5 73.3 6 17 0.0098 6.8 6.4 0.1 3 20 439 457 437 458 0.74 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF41-201 - 779 2.3e-08 33.5 73.3 7 17 0.01 7.2 6.3 0.3 3 14 467 478 465 486 0.80 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF41-201 - 779 2.3e-08 33.5 73.3 8 17 0.0059 4.1 7.1 0.1 3 21 495 514 493 514 0.84 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF41-201 - 779 2.3e-08 33.5 73.3 9 17 0.043 30 4.3 0.1 3 15 523 535 521 542 0.78 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF41-201 - 779 2.3e-08 33.5 73.3 10 17 2.6 1.8e+03 -1.4 0.2 3 12 551 560 549 561 0.85 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF41-201 - 779 2.3e-08 33.5 73.3 11 17 0.032 22 4.7 0.1 2 13 578 589 577 598 0.83 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF41-201 - 779 2.3e-08 33.5 73.3 12 17 0.0049 3.4 7.3 0.1 3 12 607 616 605 625 0.86 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF41-201 - 779 2.3e-08 33.5 73.3 13 17 0.025 17 5.1 0.9 3 15 635 647 633 654 0.78 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF41-201 - 779 2.3e-08 33.5 73.3 14 17 0.069 47 3.7 0.1 4 17 664 678 662 682 0.75 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF41-201 - 779 2.3e-08 33.5 73.3 15 17 0.13 89 2.8 0.1 3 12 691 700 689 705 0.89 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF41-201 - 779 2.3e-08 33.5 73.3 16 17 0.011 7.9 6.2 0.1 2 13 718 729 717 738 0.82 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF41-201 - 779 2.3e-08 33.5 73.3 17 17 0.13 92 2.8 0.1 3 14 747 758 745 766 0.80 Ubiquitin-Binding Zinc Finger zf-trcl PF13451.6 48 ZNF41-201 - 779 1.2e-07 31.5 73.1 1 15 2.8 1.9e+03 -1.2 0.1 3 14 269 280 267 282 0.77 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF41-201 - 779 1.2e-07 31.5 73.1 2 15 0.018 12 5.8 2.5 3 42 325 363 323 368 0.82 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF41-201 - 779 1.2e-07 31.5 73.1 3 15 0.45 3.1e+02 1.4 0.1 3 14 381 392 379 393 0.86 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF41-201 - 779 1.2e-07 31.5 73.1 4 15 0.075 52 3.9 0.2 3 15 409 421 407 423 0.90 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF41-201 - 779 1.2e-07 31.5 73.1 5 15 0.0034 2.4 8.1 0.1 3 15 437 449 435 453 0.91 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF41-201 - 779 1.2e-07 31.5 73.1 6 15 0.019 13 5.7 0.1 3 15 465 477 463 483 0.89 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF41-201 - 779 1.2e-07 31.5 73.1 7 15 0.04 27 4.7 0.1 3 15 493 505 491 509 0.86 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF41-201 - 779 1.2e-07 31.5 73.1 8 15 0.051 35 4.4 0.1 3 15 521 533 519 535 0.90 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF41-201 - 779 1.2e-07 31.5 73.1 9 15 0.0045 3.1 7.8 0.0 3 17 549 563 547 565 0.89 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF41-201 - 779 1.2e-07 31.5 73.1 10 15 0.0097 6.7 6.7 0.2 3 15 577 589 576 592 0.89 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF41-201 - 779 1.2e-07 31.5 73.1 11 15 0.05 35 4.4 0.1 3 15 605 617 603 622 0.90 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF41-201 - 779 1.2e-07 31.5 73.1 12 15 0.49 3.4e+02 1.2 6.1 3 42 633 671 631 676 0.72 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF41-201 - 779 1.2e-07 31.5 73.1 13 15 0.0018 1.2 9.1 0.2 2 17 688 703 687 705 0.88 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF41-201 - 779 1.2e-07 31.5 73.1 14 15 0.14 95 3.0 0.2 3 15 717 729 716 733 0.85 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF41-201 - 779 1.2e-07 31.5 73.1 15 15 0.38 2.6e+02 1.6 0.2 3 15 745 757 743 759 0.83 Probable zinc-ribbon domain DUF3268 PF11672.8 118 ZNF41-201 - 779 1.6e-07 31.6 58.7 1 13 2.5 1.7e+03 -0.7 0.0 26 36 266 276 249 285 0.78 zinc-finger-containing domain DUF3268 PF11672.8 118 ZNF41-201 - 779 1.6e-07 31.6 58.7 2 13 0.0027 1.9 8.9 0.4 2 37 326 361 325 369 0.89 zinc-finger-containing domain DUF3268 PF11672.8 118 ZNF41-201 - 779 1.6e-07 31.6 58.7 3 13 0.0028 1.9 8.8 1.3 2 38 382 418 381 433 0.89 zinc-finger-containing domain DUF3268 PF11672.8 118 ZNF41-201 - 779 1.6e-07 31.6 58.7 4 13 0.0016 1.1 9.6 1.8 3 38 411 446 409 465 0.84 zinc-finger-containing domain DUF3268 PF11672.8 118 ZNF41-201 - 779 1.6e-07 31.6 58.7 5 13 0.021 15 6.0 1.1 2 40 438 476 437 492 0.85 zinc-finger-containing domain DUF3268 PF11672.8 118 ZNF41-201 - 779 1.6e-07 31.6 58.7 6 13 0.00064 0.44 10.9 1.0 2 38 466 502 464 511 0.87 zinc-finger-containing domain DUF3268 PF11672.8 118 ZNF41-201 - 779 1.6e-07 31.6 58.7 7 13 0.00077 0.53 10.6 1.4 2 38 494 530 493 540 0.90 zinc-finger-containing domain DUF3268 PF11672.8 118 ZNF41-201 - 779 1.6e-07 31.6 58.7 8 13 9e-05 0.062 13.6 0.9 2 38 550 586 549 596 0.90 zinc-finger-containing domain DUF3268 PF11672.8 118 ZNF41-201 - 779 1.6e-07 31.6 58.7 9 13 0.00092 0.63 10.4 0.7 5 37 581 613 581 621 0.91 zinc-finger-containing domain DUF3268 PF11672.8 118 ZNF41-201 - 779 1.6e-07 31.6 58.7 10 13 0.015 10 6.5 1.9 2 38 606 642 605 660 0.74 zinc-finger-containing domain DUF3268 PF11672.8 118 ZNF41-201 - 779 1.6e-07 31.6 58.7 11 13 0.18 1.2e+02 3.0 1.6 2 38 634 670 633 688 0.90 zinc-finger-containing domain DUF3268 PF11672.8 118 ZNF41-201 - 779 1.6e-07 31.6 58.7 12 13 0.00034 0.24 11.8 1.1 3 38 691 726 689 734 0.89 zinc-finger-containing domain DUF3268 PF11672.8 118 ZNF41-201 - 779 1.6e-07 31.6 58.7 13 13 0.053 36 4.7 1.6 4 37 720 753 717 761 0.90 zinc-finger-containing domain C1_4 PF07975.12 55 ZNF41-201 - 779 7e-07 29.4 80.6 1 12 0.25 1.7e+02 2.5 2.1 16 49 261 294 242 296 0.80 TFIIH C1-like domain C1_4 PF07975.12 55 ZNF41-201 - 779 7e-07 29.4 80.6 2 12 0.0072 5 7.4 0.1 21 49 322 350 299 352 0.73 TFIIH C1-like domain C1_4 PF07975.12 55 ZNF41-201 - 779 7e-07 29.4 80.6 3 12 0.0013 0.91 9.8 1.9 2 49 329 378 328 380 0.82 TFIIH C1-like domain C1_4 PF07975.12 55 ZNF41-201 - 779 7e-07 29.4 80.6 4 12 0.0035 2.4 8.4 1.1 1 48 384 433 384 436 0.77 TFIIH C1-like domain C1_4 PF07975.12 55 ZNF41-201 - 779 7e-07 29.4 80.6 5 12 0.0011 0.77 10.0 3.3 2 49 441 490 440 492 0.86 TFIIH C1-like domain C1_4 PF07975.12 55 ZNF41-201 - 779 7e-07 29.4 80.6 6 12 0.19 1.3e+02 2.9 5.4 2 49 497 546 496 556 0.75 TFIIH C1-like domain C1_4 PF07975.12 55 ZNF41-201 - 779 7e-07 29.4 80.6 7 12 0.00062 0.43 10.9 1.5 1 49 552 602 552 604 0.82 TFIIH C1-like domain C1_4 PF07975.12 55 ZNF41-201 - 779 7e-07 29.4 80.6 8 12 0.2 1.4e+02 2.8 3.4 2 48 581 629 581 632 0.76 TFIIH C1-like domain C1_4 PF07975.12 55 ZNF41-201 - 779 7e-07 29.4 80.6 9 12 0.5 3.5e+02 1.5 5.7 2 49 609 658 608 660 0.81 TFIIH C1-like domain C1_4 PF07975.12 55 ZNF41-201 - 779 7e-07 29.4 80.6 10 12 0.0017 1.2 9.5 0.7 2 48 665 713 664 716 0.84 TFIIH C1-like domain C1_4 PF07975.12 55 ZNF41-201 - 779 7e-07 29.4 80.6 11 12 0.0056 3.8 7.8 1.8 2 49 693 742 692 744 0.75 TFIIH C1-like domain C1_4 PF07975.12 55 ZNF41-201 - 779 7e-07 29.4 80.6 12 12 0.0048 3.3 8.0 2.7 1 48 720 769 720 772 0.79 TFIIH C1-like domain # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF41-201.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF41-201.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF41-201.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF41-201.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF41-201.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:05:35 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZNF41-202 - 779 8.3e-122 392.7 124.6 1 19 0.0013 0.89 10.1 1.1 5 24 261 280 257 282 0.86 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF41-202 - 779 8.3e-122 392.7 124.6 2 19 0.01 7.1 7.3 0.3 2 24 286 308 285 310 0.87 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF41-202 - 779 8.3e-122 392.7 124.6 3 19 7.1e-05 0.049 14.1 0.5 10 25 322 337 316 337 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF41-202 - 779 8.3e-122 392.7 124.6 4 19 1.7e-10 1.2e-07 31.8 0.5 1 24 341 364 341 366 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF41-202 - 779 8.3e-122 392.7 124.6 5 19 3.5e-12 2.4e-09 37.2 0.2 2 25 370 393 369 394 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF41-202 - 779 8.3e-122 392.7 124.6 6 19 9.7e-10 6.7e-07 29.5 1.2 2 26 398 422 397 422 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF41-202 - 779 8.3e-122 392.7 124.6 7 19 1.9e-10 1.3e-07 31.7 0.0 1 24 425 448 425 450 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF41-202 - 779 8.3e-122 392.7 124.6 8 19 4.7e-11 3.2e-08 33.6 2.6 1 26 453 478 453 478 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF41-202 - 779 8.3e-122 392.7 124.6 9 19 6.6e-08 4.5e-05 23.7 2.4 5 26 485 506 482 506 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF41-202 - 779 8.3e-122 392.7 124.6 10 19 3.6e-10 2.5e-07 30.8 0.4 1 25 509 533 509 534 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF41-202 - 779 8.3e-122 392.7 124.6 11 19 2.8e-10 2e-07 31.1 0.5 1 24 537 560 537 561 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF41-202 - 779 8.3e-122 392.7 124.6 12 19 1.5e-07 0.0001 22.6 0.7 2 24 566 588 565 590 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF41-202 - 779 8.3e-122 392.7 124.6 13 19 2.4e-11 1.6e-08 34.6 0.1 2 24 594 616 593 618 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF41-202 - 779 8.3e-122 392.7 124.6 14 19 3.9e-08 2.7e-05 24.4 6.0 4 26 624 646 621 646 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF41-202 - 779 8.3e-122 392.7 124.6 15 19 6.1e-06 0.0042 17.4 0.1 2 25 650 673 649 674 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF41-202 - 779 8.3e-122 392.7 124.6 16 19 5.7e-09 3.9e-06 27.0 0.4 1 25 677 701 677 701 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF41-202 - 779 8.3e-122 392.7 124.6 17 19 2.1e-09 1.5e-06 28.4 0.9 2 24 706 728 705 730 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF41-202 - 779 8.3e-122 392.7 124.6 18 19 4.8e-09 3.3e-06 27.3 0.2 2 25 734 757 733 758 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF41-202 - 779 8.3e-122 392.7 124.6 19 19 0.0044 3.1 8.4 0.5 1 16 761 776 761 776 0.93 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZNF41-202 - 779 1.8e-98 317.8 131.8 1 17 1.4e-06 0.00093 19.5 1.5 1 23 271 293 271 293 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF41-202 - 779 1.8e-98 317.8 131.8 2 17 3.5e-07 0.00024 21.4 0.6 1 23 327 349 327 349 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF41-202 - 779 1.8e-98 317.8 131.8 3 17 2.2e-08 1.5e-05 25.1 1.2 1 23 355 377 355 377 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF41-202 - 779 1.8e-98 317.8 131.8 4 17 2.9e-08 2e-05 24.8 0.3 1 23 383 405 383 405 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF41-202 - 779 1.8e-98 317.8 131.8 5 17 2.4e-09 1.7e-06 28.2 0.5 1 23 411 433 411 433 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF41-202 - 779 1.8e-98 317.8 131.8 6 17 1.5e-08 1e-05 25.7 1.1 1 23 439 461 439 461 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF41-202 - 779 1.8e-98 317.8 131.8 7 17 3.8e-09 2.6e-06 27.6 2.4 1 23 467 489 467 489 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF41-202 - 779 1.8e-98 317.8 131.8 8 17 3.2e-08 2.2e-05 24.7 3.0 1 23 495 517 495 517 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF41-202 - 779 1.8e-98 317.8 131.8 9 17 1.8e-09 1.2e-06 28.6 0.3 1 23 523 545 523 545 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF41-202 - 779 1.8e-98 317.8 131.8 10 17 8.2e-06 0.0057 17.1 0.5 1 23 551 573 551 573 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF41-202 - 779 1.8e-98 317.8 131.8 11 17 5.9e-09 4.1e-06 26.9 0.3 1 23 579 601 579 601 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF41-202 - 779 1.8e-98 317.8 131.8 12 17 2.5e-08 1.8e-05 25.0 1.4 1 23 607 629 607 629 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF41-202 - 779 1.8e-98 317.8 131.8 13 17 6.9e-09 4.7e-06 26.8 3.1 1 23 635 657 635 657 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF41-202 - 779 1.8e-98 317.8 131.8 14 17 1.6e-07 0.00011 22.4 0.1 3 23 665 685 664 685 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF41-202 - 779 1.8e-98 317.8 131.8 15 17 1.9e-06 0.0013 19.1 0.5 1 23 691 713 691 713 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF41-202 - 779 1.8e-98 317.8 131.8 16 17 3.4e-06 0.0024 18.3 0.1 1 23 719 741 719 741 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF41-202 - 779 1.8e-98 317.8 131.8 17 17 2.9e-08 2e-05 24.8 0.7 1 23 747 769 747 769 0.98 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZNF41-202 - 779 2.5e-49 161.6 121.5 1 17 0.003 2.1 9.4 1.0 1 23 271 293 271 294 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF41-202 - 779 2.5e-49 161.6 121.5 2 17 1.5e-05 0.01 16.6 0.5 1 23 327 349 327 350 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF41-202 - 779 2.5e-49 161.6 121.5 3 17 9.1e-06 0.0063 17.3 1.1 1 23 355 377 355 378 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF41-202 - 779 2.5e-49 161.6 121.5 4 17 4.3e-06 0.0029 18.3 0.3 1 23 383 405 383 406 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF41-202 - 779 2.5e-49 161.6 121.5 5 17 2.2e-05 0.015 16.1 0.4 1 23 411 433 411 434 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF41-202 - 779 2.5e-49 161.6 121.5 6 17 0.0012 0.82 10.7 0.8 1 23 439 461 439 462 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF41-202 - 779 2.5e-49 161.6 121.5 7 17 1.8e-05 0.013 16.3 1.9 1 23 467 489 467 490 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF41-202 - 779 2.5e-49 161.6 121.5 8 17 2.1e-05 0.015 16.1 1.6 1 23 495 517 495 518 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF41-202 - 779 2.5e-49 161.6 121.5 9 17 1.3e-05 0.0088 16.8 0.3 1 23 523 545 523 546 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF41-202 - 779 2.5e-49 161.6 121.5 10 17 0.0054 3.7 8.6 0.4 1 23 551 573 551 574 0.86 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF41-202 - 779 2.5e-49 161.6 121.5 11 17 5.8e-05 0.04 14.8 0.3 1 23 579 601 579 602 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF41-202 - 779 2.5e-49 161.6 121.5 12 17 0.00025 0.17 12.8 1.3 1 23 607 629 607 630 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF41-202 - 779 2.5e-49 161.6 121.5 13 17 2.2e-05 0.015 16.1 2.7 1 23 635 657 635 658 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF41-202 - 779 2.5e-49 161.6 121.5 14 17 0.00027 0.19 12.7 0.1 2 23 664 685 663 686 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF41-202 - 779 2.5e-49 161.6 121.5 15 17 0.00018 0.12 13.2 0.4 1 23 691 713 691 714 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF41-202 - 779 2.5e-49 161.6 121.5 16 17 0.0012 0.8 10.7 0.2 1 23 719 741 719 742 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF41-202 - 779 2.5e-49 161.6 121.5 17 17 1e-05 0.0069 17.1 0.6 1 23 747 769 747 770 0.96 C2H2-type zinc finger KRAB PF01352.27 42 ZNF41-202 - 779 1.9e-23 81.8 0.3 1 1 5.7e-26 3.9e-23 80.8 0.3 1 42 26 67 26 67 0.99 KRAB box Zn-ribbon_8 PF09723.10 40 ZNF41-202 - 779 2.2e-22 78.9 77.9 1 13 0.46 3.2e+02 1.6 0.3 6 16 271 281 253 306 0.67 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF41-202 - 779 2.2e-22 78.9 77.9 2 13 1.4e-05 0.0099 16.0 0.8 6 34 327 362 326 368 0.90 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF41-202 - 779 2.2e-22 78.9 77.9 3 13 0.00032 0.22 11.7 5.6 6 38 383 422 382 423 0.88 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF41-202 - 779 2.2e-22 78.9 77.9 4 13 3.1e-05 0.021 14.9 2.4 6 34 411 446 410 452 0.87 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF41-202 - 779 2.2e-22 78.9 77.9 5 13 0.00038 0.26 11.4 3.1 6 38 439 478 437 479 0.89 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF41-202 - 779 2.2e-22 78.9 77.9 6 13 5.5e-06 0.0038 17.3 2.5 6 34 467 502 465 508 0.91 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF41-202 - 779 2.2e-22 78.9 77.9 7 13 6.8e-05 0.047 13.8 2.4 6 35 495 531 494 535 0.90 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF41-202 - 779 2.2e-22 78.9 77.9 8 13 0.00024 0.17 12.0 1.8 6 34 523 558 522 561 0.92 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF41-202 - 779 2.2e-22 78.9 77.9 9 13 4e-07 0.00028 21.0 1.5 6 34 579 614 578 619 0.91 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF41-202 - 779 2.2e-22 78.9 77.9 10 13 3.9e-05 0.027 14.6 3.9 6 35 635 671 634 675 0.91 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF41-202 - 779 2.2e-22 78.9 77.9 11 13 6e-05 0.041 14.0 2.2 6 34 691 726 690 732 0.87 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF41-202 - 779 2.2e-22 78.9 77.9 12 13 0.0042 2.9 8.1 4.0 6 34 719 754 718 760 0.84 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF41-202 - 779 2.2e-22 78.9 77.9 13 13 0.026 18 5.6 0.3 6 20 747 767 745 774 0.75 Zinc ribbon domain zf-C2H2_6 PF13912.6 27 ZNF41-202 - 779 6.3e-16 57.9 112.1 1 17 1.3 9.1e+02 0.0 0.2 2 7 271 276 270 281 0.90 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF41-202 - 779 6.3e-16 57.9 112.1 2 17 0.00058 0.4 10.7 0.6 2 24 327 349 327 352 0.87 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF41-202 - 779 6.3e-16 57.9 112.1 3 17 0.0035 2.4 8.3 0.6 2 11 355 364 355 377 0.86 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF41-202 - 779 6.3e-16 57.9 112.1 4 17 0.0006 0.42 10.7 0.8 2 24 383 405 383 408 0.82 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF41-202 - 779 6.3e-16 57.9 112.1 5 17 2.6e-06 0.0018 18.2 0.9 1 24 410 433 410 436 0.92 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF41-202 - 779 6.3e-16 57.9 112.1 6 17 1.9 1.3e+03 -0.4 0.2 2 11 439 448 439 448 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF41-202 - 779 6.3e-16 57.9 112.1 7 17 0.012 8.3 6.5 1.4 2 12 467 477 467 479 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF41-202 - 779 6.3e-16 57.9 112.1 8 17 7.7e-07 0.00053 19.9 1.5 2 24 495 517 495 520 0.95 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF41-202 - 779 6.3e-16 57.9 112.1 9 17 1.9e-05 0.013 15.5 0.5 2 24 523 545 523 548 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF41-202 - 779 6.3e-16 57.9 112.1 10 17 0.39 2.7e+02 1.7 0.4 2 11 551 560 551 560 0.95 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF41-202 - 779 6.3e-16 57.9 112.1 11 17 0.045 31 4.7 1.0 1 11 578 588 578 588 0.95 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF41-202 - 779 6.3e-16 57.9 112.1 12 17 0.018 13 6.0 0.2 2 11 607 616 607 616 0.95 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF41-202 - 779 6.3e-16 57.9 112.1 13 17 0.55 3.8e+02 1.2 2.7 2 13 635 646 635 658 0.78 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF41-202 - 779 6.3e-16 57.9 112.1 14 17 0.0069 4.8 7.3 0.1 3 24 664 685 664 688 0.88 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF41-202 - 779 6.3e-16 57.9 112.1 15 17 0.17 1.2e+02 2.9 0.4 2 13 691 702 691 716 0.73 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF41-202 - 779 6.3e-16 57.9 112.1 16 17 0.0093 6.4 6.9 1.4 1 11 718 728 718 728 0.95 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF41-202 - 779 6.3e-16 57.9 112.1 17 17 0.0042 2.9 8.0 0.6 2 25 747 770 747 772 0.90 C2H2-type zinc finger ADK_lid PF05191.14 36 ZNF41-202 - 779 1.2e-09 37.9 40.1 1 7 2.4e-06 0.0017 18.3 0.3 3 36 328 369 327 369 0.82 Adenylate kinase, active site lid ADK_lid PF05191.14 36 ZNF41-202 - 779 1.2e-09 37.9 40.1 2 7 0.011 7.2 6.7 1.1 4 34 413 451 383 452 0.80 Adenylate kinase, active site lid ADK_lid PF05191.14 36 ZNF41-202 - 779 1.2e-09 37.9 40.1 3 7 0.0054 3.7 7.6 1.3 4 34 469 507 467 510 0.79 Adenylate kinase, active site lid ADK_lid PF05191.14 36 ZNF41-202 - 779 1.2e-09 37.9 40.1 4 7 0.055 38 4.4 0.6 3 32 524 561 523 564 0.71 Adenylate kinase, active site lid ADK_lid PF05191.14 36 ZNF41-202 - 779 1.2e-09 37.9 40.1 5 7 0.0021 1.4 8.9 0.0 4 34 581 619 579 620 0.84 Adenylate kinase, active site lid ADK_lid PF05191.14 36 ZNF41-202 - 779 1.2e-09 37.9 40.1 6 7 0.0065 4.5 7.3 2.4 4 35 637 676 635 676 0.78 Adenylate kinase, active site lid ADK_lid PF05191.14 36 ZNF41-202 - 779 1.2e-09 37.9 40.1 7 7 0.04 27 4.8 0.1 4 30 721 755 691 760 0.62 Adenylate kinase, active site lid zf_UBZ PF18439.1 32 ZNF41-202 - 779 2.3e-08 33.5 73.3 1 17 1.1 7.6e+02 -0.2 0.1 3 9 271 277 269 290 0.74 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF41-202 - 779 2.3e-08 33.5 73.3 2 17 0.015 10 5.8 0.1 3 15 327 339 325 346 0.76 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF41-202 - 779 2.3e-08 33.5 73.3 3 17 0.03 20 4.8 0.2 3 12 355 364 353 368 0.88 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF41-202 - 779 2.3e-08 33.5 73.3 4 17 0.0061 4.2 7.1 0.2 3 18 383 399 381 402 0.80 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF41-202 - 779 2.3e-08 33.5 73.3 5 17 0.048 33 4.2 0.1 2 12 410 420 409 430 0.83 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF41-202 - 779 2.3e-08 33.5 73.3 6 17 0.0098 6.8 6.4 0.1 3 20 439 457 437 458 0.74 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF41-202 - 779 2.3e-08 33.5 73.3 7 17 0.01 7.2 6.3 0.3 3 14 467 478 465 486 0.80 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF41-202 - 779 2.3e-08 33.5 73.3 8 17 0.0059 4.1 7.1 0.1 3 21 495 514 493 514 0.84 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF41-202 - 779 2.3e-08 33.5 73.3 9 17 0.043 30 4.3 0.1 3 15 523 535 521 542 0.78 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF41-202 - 779 2.3e-08 33.5 73.3 10 17 2.6 1.8e+03 -1.4 0.2 3 12 551 560 549 561 0.85 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF41-202 - 779 2.3e-08 33.5 73.3 11 17 0.032 22 4.7 0.1 2 13 578 589 577 598 0.83 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF41-202 - 779 2.3e-08 33.5 73.3 12 17 0.0049 3.4 7.3 0.1 3 12 607 616 605 625 0.86 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF41-202 - 779 2.3e-08 33.5 73.3 13 17 0.025 17 5.1 0.9 3 15 635 647 633 654 0.78 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF41-202 - 779 2.3e-08 33.5 73.3 14 17 0.069 47 3.7 0.1 4 17 664 678 662 682 0.75 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF41-202 - 779 2.3e-08 33.5 73.3 15 17 0.13 89 2.8 0.1 3 12 691 700 689 705 0.89 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF41-202 - 779 2.3e-08 33.5 73.3 16 17 0.011 7.9 6.2 0.1 2 13 718 729 717 738 0.82 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF41-202 - 779 2.3e-08 33.5 73.3 17 17 0.13 92 2.8 0.1 3 14 747 758 745 766 0.80 Ubiquitin-Binding Zinc Finger zf-trcl PF13451.6 48 ZNF41-202 - 779 1.2e-07 31.5 73.1 1 15 2.8 1.9e+03 -1.2 0.1 3 14 269 280 267 282 0.77 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF41-202 - 779 1.2e-07 31.5 73.1 2 15 0.018 12 5.8 2.5 3 42 325 363 323 368 0.82 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF41-202 - 779 1.2e-07 31.5 73.1 3 15 0.45 3.1e+02 1.4 0.1 3 14 381 392 379 393 0.86 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF41-202 - 779 1.2e-07 31.5 73.1 4 15 0.075 52 3.9 0.2 3 15 409 421 407 423 0.90 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF41-202 - 779 1.2e-07 31.5 73.1 5 15 0.0034 2.4 8.1 0.1 3 15 437 449 435 453 0.91 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF41-202 - 779 1.2e-07 31.5 73.1 6 15 0.019 13 5.7 0.1 3 15 465 477 463 483 0.89 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF41-202 - 779 1.2e-07 31.5 73.1 7 15 0.04 27 4.7 0.1 3 15 493 505 491 509 0.86 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF41-202 - 779 1.2e-07 31.5 73.1 8 15 0.051 35 4.4 0.1 3 15 521 533 519 535 0.90 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF41-202 - 779 1.2e-07 31.5 73.1 9 15 0.0045 3.1 7.8 0.0 3 17 549 563 547 565 0.89 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF41-202 - 779 1.2e-07 31.5 73.1 10 15 0.0097 6.7 6.7 0.2 3 15 577 589 576 592 0.89 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF41-202 - 779 1.2e-07 31.5 73.1 11 15 0.05 35 4.4 0.1 3 15 605 617 603 622 0.90 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF41-202 - 779 1.2e-07 31.5 73.1 12 15 0.49 3.4e+02 1.2 6.1 3 42 633 671 631 676 0.72 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF41-202 - 779 1.2e-07 31.5 73.1 13 15 0.0018 1.2 9.1 0.2 2 17 688 703 687 705 0.88 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF41-202 - 779 1.2e-07 31.5 73.1 14 15 0.14 95 3.0 0.2 3 15 717 729 716 733 0.85 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF41-202 - 779 1.2e-07 31.5 73.1 15 15 0.38 2.6e+02 1.6 0.2 3 15 745 757 743 759 0.83 Probable zinc-ribbon domain DUF3268 PF11672.8 118 ZNF41-202 - 779 1.6e-07 31.6 58.7 1 13 2.5 1.7e+03 -0.7 0.0 26 36 266 276 249 285 0.78 zinc-finger-containing domain DUF3268 PF11672.8 118 ZNF41-202 - 779 1.6e-07 31.6 58.7 2 13 0.0027 1.9 8.9 0.4 2 37 326 361 325 369 0.89 zinc-finger-containing domain DUF3268 PF11672.8 118 ZNF41-202 - 779 1.6e-07 31.6 58.7 3 13 0.0028 1.9 8.8 1.3 2 38 382 418 381 433 0.89 zinc-finger-containing domain DUF3268 PF11672.8 118 ZNF41-202 - 779 1.6e-07 31.6 58.7 4 13 0.0016 1.1 9.6 1.8 3 38 411 446 409 465 0.84 zinc-finger-containing domain DUF3268 PF11672.8 118 ZNF41-202 - 779 1.6e-07 31.6 58.7 5 13 0.021 15 6.0 1.1 2 40 438 476 437 492 0.85 zinc-finger-containing domain DUF3268 PF11672.8 118 ZNF41-202 - 779 1.6e-07 31.6 58.7 6 13 0.00064 0.44 10.9 1.0 2 38 466 502 464 511 0.87 zinc-finger-containing domain DUF3268 PF11672.8 118 ZNF41-202 - 779 1.6e-07 31.6 58.7 7 13 0.00077 0.53 10.6 1.4 2 38 494 530 493 540 0.90 zinc-finger-containing domain DUF3268 PF11672.8 118 ZNF41-202 - 779 1.6e-07 31.6 58.7 8 13 9e-05 0.062 13.6 0.9 2 38 550 586 549 596 0.90 zinc-finger-containing domain DUF3268 PF11672.8 118 ZNF41-202 - 779 1.6e-07 31.6 58.7 9 13 0.00092 0.63 10.4 0.7 5 37 581 613 581 621 0.91 zinc-finger-containing domain DUF3268 PF11672.8 118 ZNF41-202 - 779 1.6e-07 31.6 58.7 10 13 0.015 10 6.5 1.9 2 38 606 642 605 660 0.74 zinc-finger-containing domain DUF3268 PF11672.8 118 ZNF41-202 - 779 1.6e-07 31.6 58.7 11 13 0.18 1.2e+02 3.0 1.6 2 38 634 670 633 688 0.90 zinc-finger-containing domain DUF3268 PF11672.8 118 ZNF41-202 - 779 1.6e-07 31.6 58.7 12 13 0.00034 0.24 11.8 1.1 3 38 691 726 689 734 0.89 zinc-finger-containing domain DUF3268 PF11672.8 118 ZNF41-202 - 779 1.6e-07 31.6 58.7 13 13 0.053 36 4.7 1.6 4 37 720 753 717 761 0.90 zinc-finger-containing domain C1_4 PF07975.12 55 ZNF41-202 - 779 7e-07 29.4 80.6 1 12 0.25 1.7e+02 2.5 2.1 16 49 261 294 242 296 0.80 TFIIH C1-like domain C1_4 PF07975.12 55 ZNF41-202 - 779 7e-07 29.4 80.6 2 12 0.0072 5 7.4 0.1 21 49 322 350 299 352 0.73 TFIIH C1-like domain C1_4 PF07975.12 55 ZNF41-202 - 779 7e-07 29.4 80.6 3 12 0.0013 0.91 9.8 1.9 2 49 329 378 328 380 0.82 TFIIH C1-like domain C1_4 PF07975.12 55 ZNF41-202 - 779 7e-07 29.4 80.6 4 12 0.0035 2.4 8.4 1.1 1 48 384 433 384 436 0.77 TFIIH C1-like domain C1_4 PF07975.12 55 ZNF41-202 - 779 7e-07 29.4 80.6 5 12 0.0011 0.77 10.0 3.3 2 49 441 490 440 492 0.86 TFIIH C1-like domain C1_4 PF07975.12 55 ZNF41-202 - 779 7e-07 29.4 80.6 6 12 0.19 1.3e+02 2.9 5.4 2 49 497 546 496 556 0.75 TFIIH C1-like domain C1_4 PF07975.12 55 ZNF41-202 - 779 7e-07 29.4 80.6 7 12 0.00062 0.43 10.9 1.5 1 49 552 602 552 604 0.82 TFIIH C1-like domain C1_4 PF07975.12 55 ZNF41-202 - 779 7e-07 29.4 80.6 8 12 0.2 1.4e+02 2.8 3.4 2 48 581 629 581 632 0.76 TFIIH C1-like domain C1_4 PF07975.12 55 ZNF41-202 - 779 7e-07 29.4 80.6 9 12 0.5 3.5e+02 1.5 5.7 2 49 609 658 608 660 0.81 TFIIH C1-like domain C1_4 PF07975.12 55 ZNF41-202 - 779 7e-07 29.4 80.6 10 12 0.0017 1.2 9.5 0.7 2 48 665 713 664 716 0.84 TFIIH C1-like domain C1_4 PF07975.12 55 ZNF41-202 - 779 7e-07 29.4 80.6 11 12 0.0056 3.8 7.8 1.8 2 49 693 742 692 744 0.75 TFIIH C1-like domain C1_4 PF07975.12 55 ZNF41-202 - 779 7e-07 29.4 80.6 12 12 0.0048 3.3 8.0 2.7 1 48 720 769 720 772 0.79 TFIIH C1-like domain # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF41-202.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF41-202.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF41-202.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF41-202.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF41-202.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:05:35 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF41-203.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF41-203.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF41-203.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF41-203.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF41-203.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:05:36 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF41-204.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF41-204.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF41-204.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF41-204.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF41-204.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:05:36 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZNF415-201 - 555 1.1e-90 294.4 75.8 1 13 0.21 1.2e+02 3.4 0.0 12 23 213 224 211 227 0.86 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF415-201 - 555 1.1e-90 294.4 75.8 2 13 1.8e-06 0.00099 19.4 0.1 8 25 236 254 229 255 0.81 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF415-201 - 555 1.1e-90 294.4 75.8 3 13 1.6e-10 9.2e-08 32.2 0.4 1 25 258 282 258 283 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF415-201 - 555 1.1e-90 294.4 75.8 4 13 1.3e-10 7.5e-08 32.5 0.9 4 25 289 310 287 311 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF415-201 - 555 1.1e-90 294.4 75.8 5 13 1.7e-09 9.6e-07 29.0 0.6 4 25 317 338 315 338 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF415-201 - 555 1.1e-90 294.4 75.8 6 13 3.3e-08 1.9e-05 24.9 0.5 2 25 343 366 342 367 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF415-201 - 555 1.1e-90 294.4 75.8 7 13 8.8e-11 5e-08 33.0 0.3 2 25 371 394 370 395 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF415-201 - 555 1.1e-90 294.4 75.8 8 13 2.4e-10 1.4e-07 31.7 0.4 1 25 398 422 398 423 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF415-201 - 555 1.1e-90 294.4 75.8 9 13 6.6e-11 3.7e-08 33.4 1.6 1 25 426 450 426 450 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF415-201 - 555 1.1e-90 294.4 75.8 10 13 3.2e-09 1.8e-06 28.1 0.3 1 25 454 478 454 478 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF415-201 - 555 1.1e-90 294.4 75.8 11 13 1.9e-09 1.1e-06 28.8 0.4 2 25 483 506 482 506 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF415-201 - 555 1.1e-90 294.4 75.8 12 13 1.2e-11 6.7e-09 35.8 0.5 1 25 510 534 510 534 0.97 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF415-201 - 555 1.1e-90 294.4 75.8 13 13 0.00045 0.25 11.8 0.5 1 16 538 553 538 553 0.94 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZNF415-201 - 555 1.5e-67 220.4 87.5 1 12 9.7 5.4e+03 -1.8 0.1 5 13 106 114 96 116 0.69 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF415-201 - 555 1.5e-67 220.4 87.5 2 12 9e-10 5e-07 29.8 0.4 1 23 244 266 244 266 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF415-201 - 555 1.5e-67 220.4 87.5 3 12 8.3e-08 4.7e-05 23.6 3.3 1 23 272 294 272 294 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF415-201 - 555 1.5e-67 220.4 87.5 4 12 2.2e-07 0.00012 22.3 3.5 1 23 300 322 300 322 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF415-201 - 555 1.5e-67 220.4 87.5 5 12 1.7e-07 9.3e-05 22.7 0.4 1 23 328 350 328 350 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF415-201 - 555 1.5e-67 220.4 87.5 6 12 2.6e-09 1.5e-06 28.3 0.6 1 23 356 378 356 378 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF415-201 - 555 1.5e-67 220.4 87.5 7 12 2.8e-09 1.6e-06 28.2 0.4 1 23 384 406 384 406 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF415-201 - 555 1.5e-67 220.4 87.5 8 12 3.9e-09 2.2e-06 27.8 2.4 1 23 412 434 412 434 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF415-201 - 555 1.5e-67 220.4 87.5 9 12 1e-07 5.8e-05 23.3 1.0 1 23 440 462 440 462 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF415-201 - 555 1.5e-67 220.4 87.5 10 12 1.5e-06 0.00085 19.7 1.4 1 23 468 490 468 490 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF415-201 - 555 1.5e-67 220.4 87.5 11 12 2e-08 1.1e-05 25.6 0.5 1 23 496 518 496 518 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF415-201 - 555 1.5e-67 220.4 87.5 12 12 3.1e-08 1.7e-05 25.0 0.7 1 23 524 546 524 546 0.98 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZNF415-201 - 555 2.8e-37 124.2 78.2 1 11 1.6e-07 8.9e-05 23.0 0.6 1 23 244 266 244 267 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF415-201 - 555 2.8e-37 124.2 78.2 2 11 0.0007 0.39 11.7 2.6 1 23 272 294 272 295 0.90 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF415-201 - 555 2.8e-37 124.2 78.2 3 11 0.00028 0.16 12.9 2.4 1 23 300 322 300 323 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF415-201 - 555 2.8e-37 124.2 78.2 4 11 0.00011 0.059 14.2 0.4 1 23 328 350 328 351 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF415-201 - 555 2.8e-37 124.2 78.2 5 11 1.1e-05 0.0062 17.3 0.5 1 23 356 378 356 379 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF415-201 - 555 2.8e-37 124.2 78.2 6 11 1e-06 0.00056 20.5 0.6 1 23 384 406 384 407 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF415-201 - 555 2.8e-37 124.2 78.2 7 11 2.3e-05 0.013 16.3 1.9 1 23 412 434 412 435 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF415-201 - 555 2.8e-37 124.2 78.2 8 11 0.00033 0.18 12.7 0.8 1 23 440 462 440 463 0.91 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF415-201 - 555 2.8e-37 124.2 78.2 9 11 0.00011 0.061 14.2 1.2 1 23 468 490 468 491 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF415-201 - 555 2.8e-37 124.2 78.2 10 11 3.9e-05 0.022 15.6 0.3 1 23 496 518 496 519 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF415-201 - 555 2.8e-37 124.2 78.2 11 11 3.1e-05 0.017 15.9 0.5 1 23 524 546 524 547 0.92 C2H2-type zinc finger KRAB PF01352.27 42 ZNF415-201 - 555 1.5e-24 85.4 0.5 1 1 5.2e-27 2.9e-24 84.4 0.5 2 42 6 46 5 46 0.97 KRAB box zf-C2H2_11 PF16622.5 29 ZNF415-201 - 555 4.2e-20 71.2 46.4 1 11 0.0015 0.85 9.4 0.1 5 25 244 264 241 266 0.90 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF415-201 - 555 4.2e-20 71.2 46.4 2 11 0.045 25 4.7 0.8 5 25 272 292 269 294 0.87 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF415-201 - 555 4.2e-20 71.2 46.4 3 11 2.3 1.3e+03 -0.7 0.7 5 16 300 311 298 319 0.76 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF415-201 - 555 4.2e-20 71.2 46.4 4 11 0.023 13 5.7 0.1 7 26 330 349 327 350 0.88 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF415-201 - 555 4.2e-20 71.2 46.4 5 11 0.001 0.57 10.0 0.2 5 26 356 377 354 378 0.94 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF415-201 - 555 4.2e-20 71.2 46.4 6 11 1.1e-05 0.0064 16.2 0.1 5 26 384 405 381 406 0.94 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF415-201 - 555 4.2e-20 71.2 46.4 7 11 0.013 7.1 6.5 0.2 5 25 412 432 409 434 0.88 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF415-201 - 555 4.2e-20 71.2 46.4 8 11 0.0043 2.4 8.0 0.1 5 26 440 461 437 462 0.88 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF415-201 - 555 4.2e-20 71.2 46.4 9 11 0.00043 0.24 11.2 0.3 5 26 468 489 465 490 0.91 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF415-201 - 555 4.2e-20 71.2 46.4 10 11 3.1e-05 0.018 14.8 0.0 5 26 496 517 493 518 0.90 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF415-201 - 555 4.2e-20 71.2 46.4 11 11 0.00022 0.12 12.1 0.2 5 26 524 545 522 548 0.90 zinc-finger C2H2-type zf-C2H2_6 PF13912.6 27 ZNF415-201 - 555 4.7e-18 64.7 75.3 1 11 0.00075 0.42 10.7 0.1 2 12 244 254 244 263 0.92 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF415-201 - 555 4.7e-18 64.7 75.3 2 11 0.0028 1.6 8.8 0.9 2 12 272 282 272 292 0.95 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF415-201 - 555 4.7e-18 64.7 75.3 3 11 0.03 17 5.6 2.4 2 13 300 311 300 322 0.88 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF415-201 - 555 4.7e-18 64.7 75.3 4 11 0.0076 4.3 7.5 0.9 2 12 328 338 328 338 0.92 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF415-201 - 555 4.7e-18 64.7 75.3 5 11 6.1e-05 0.034 14.1 0.7 2 24 356 378 356 381 0.88 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF415-201 - 555 4.7e-18 64.7 75.3 6 11 0.00031 0.17 11.9 0.1 2 12 384 394 384 405 0.88 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF415-201 - 555 4.7e-18 64.7 75.3 7 11 0.0004 0.23 11.5 4.3 2 22 412 432 412 435 0.74 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF415-201 - 555 4.7e-18 64.7 75.3 8 11 0.00083 0.46 10.5 1.1 2 20 440 458 440 462 0.89 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF415-201 - 555 4.7e-18 64.7 75.3 9 11 0.0035 2 8.5 1.7 2 20 468 486 468 490 0.89 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF415-201 - 555 4.7e-18 64.7 75.3 10 11 0.00036 0.2 11.7 0.3 2 12 496 506 496 515 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF415-201 - 555 4.7e-18 64.7 75.3 11 11 0.006 3.3 7.8 0.2 2 12 524 534 524 547 0.92 C2H2-type zinc finger Zn-ribbon_8 PF09723.10 40 ZNF415-201 - 555 9.8e-16 57.6 54.2 1 11 0.0043 2.4 8.3 3.6 6 35 244 280 243 283 0.78 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF415-201 - 555 9.8e-16 57.6 54.2 2 11 0.07 39 4.5 6.4 6 34 272 307 271 311 0.81 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF415-201 - 555 9.8e-16 57.6 54.2 3 11 0.00079 0.44 10.7 4.9 6 34 300 335 299 341 0.85 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF415-201 - 555 9.8e-16 57.6 54.2 4 11 0.0075 4.2 7.6 0.3 6 19 328 341 327 345 0.86 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF415-201 - 555 9.8e-16 57.6 54.2 5 11 2.5e-05 0.014 15.5 4.1 6 34 356 391 355 395 0.91 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF415-201 - 555 9.8e-16 57.6 54.2 6 11 0.0016 0.91 9.7 0.3 6 19 384 397 383 404 0.84 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF415-201 - 555 9.8e-16 57.6 54.2 7 11 0.00013 0.07 13.3 4.5 6 34 412 447 411 452 0.85 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF415-201 - 555 9.8e-16 57.6 54.2 8 11 0.0029 1.6 8.9 0.3 6 19 440 453 438 462 0.86 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF415-201 - 555 9.8e-16 57.6 54.2 9 11 0.0021 1.2 9.4 0.1 6 20 468 482 467 491 0.85 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF415-201 - 555 9.8e-16 57.6 54.2 10 11 8.1e-05 0.045 13.9 3.1 6 34 496 531 495 536 0.85 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF415-201 - 555 9.8e-16 57.6 54.2 11 11 0.0033 1.9 8.7 0.2 6 18 524 536 523 546 0.88 Zinc ribbon domain zf_UBZ PF18439.1 32 ZNF415-201 - 555 8.3e-14 50.9 45.2 1 11 0.044 25 4.6 0.0 2 14 243 255 242 262 0.83 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF415-201 - 555 8.3e-14 50.9 45.2 2 11 0.31 1.8e+02 1.9 1.3 3 13 272 282 270 286 0.86 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF415-201 - 555 8.3e-14 50.9 45.2 3 11 0.28 1.6e+02 2.0 0.9 3 14 300 311 298 315 0.86 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF415-201 - 555 8.3e-14 50.9 45.2 4 11 0.0016 0.9 9.2 0.1 3 20 328 346 326 347 0.81 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF415-201 - 555 8.3e-14 50.9 45.2 5 11 0.0008 0.45 10.2 0.1 3 21 356 375 354 375 0.92 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF415-201 - 555 8.3e-14 50.9 45.2 6 11 0.0053 3 7.5 0.1 3 16 384 398 382 402 0.81 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF415-201 - 555 8.3e-14 50.9 45.2 7 11 0.012 6.5 6.4 0.1 3 20 412 430 410 431 0.79 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF415-201 - 555 8.3e-14 50.9 45.2 8 11 0.00093 0.52 9.9 0.2 3 21 440 459 438 459 0.92 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF415-201 - 555 8.3e-14 50.9 45.2 9 11 0.0016 0.9 9.2 0.1 3 21 468 487 466 487 0.92 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF415-201 - 555 8.3e-14 50.9 45.2 10 11 0.0046 2.6 7.7 0.1 3 20 496 514 494 515 0.80 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF415-201 - 555 8.3e-14 50.9 45.2 11 11 0.0032 1.8 8.2 0.1 3 14 524 535 522 542 0.90 Ubiquitin-Binding Zinc Finger C1_1 PF00130.22 53 ZNF415-201 - 555 6e-11 42.0 44.8 1 10 0.066 37 4.3 0.2 22 38 237 253 219 259 0.64 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF415-201 - 555 6e-11 42.0 44.8 2 10 0.00035 0.19 11.6 3.4 2 47 262 319 262 325 0.88 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF415-201 - 555 6e-11 42.0 44.8 3 10 0.018 10 6.1 2.6 4 37 293 336 290 340 0.82 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF415-201 - 555 6e-11 42.0 44.8 4 10 0.0032 1.8 8.5 1.6 9 37 325 364 318 368 0.85 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF415-201 - 555 6e-11 42.0 44.8 5 10 0.049 28 4.7 0.2 5 23 378 395 373 400 0.74 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF415-201 - 555 6e-11 42.0 44.8 6 10 5.8e-05 0.032 14.1 0.9 2 37 402 448 402 454 0.87 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF415-201 - 555 6e-11 42.0 44.8 7 10 0.0019 1.1 9.2 1.7 4 35 433 474 426 482 0.79 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF415-201 - 555 6e-11 42.0 44.8 8 10 0.0023 1.3 9.0 2.6 1 36 458 503 458 505 0.83 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF415-201 - 555 6e-11 42.0 44.8 9 10 0.00013 0.071 13.0 1.7 1 37 486 532 486 535 0.86 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF415-201 - 555 6e-11 42.0 44.8 10 10 0.0023 1.3 9.0 0.3 1 22 514 537 514 548 0.79 Phorbol esters/diacylglycerol binding domain (C1 domain) XPA_N PF01286.18 32 ZNF415-201 - 555 2.4e-07 30.7 35.3 1 11 0.26 1.5e+02 2.6 0.0 3 12 245 254 244 265 0.84 XPA protein N-terminal XPA_N PF01286.18 32 ZNF415-201 - 555 2.4e-07 30.7 35.3 2 11 0.31 1.8e+02 2.3 1.0 3 12 273 282 271 286 0.89 XPA protein N-terminal XPA_N PF01286.18 32 ZNF415-201 - 555 2.4e-07 30.7 35.3 3 11 0.32 1.8e+02 2.3 0.1 3 11 301 309 299 313 0.87 XPA protein N-terminal XPA_N PF01286.18 32 ZNF415-201 - 555 2.4e-07 30.7 35.3 4 11 0.012 6.5 6.9 0.0 3 12 329 338 327 346 0.86 XPA protein N-terminal XPA_N PF01286.18 32 ZNF415-201 - 555 2.4e-07 30.7 35.3 5 11 0.042 24 5.1 0.1 3 13 357 367 355 374 0.84 XPA protein N-terminal XPA_N PF01286.18 32 ZNF415-201 - 555 2.4e-07 30.7 35.3 6 11 0.042 24 5.1 0.0 3 13 385 395 383 403 0.85 XPA protein N-terminal XPA_N PF01286.18 32 ZNF415-201 - 555 2.4e-07 30.7 35.3 7 11 0.088 49 4.1 0.1 3 11 413 421 411 428 0.88 XPA protein N-terminal XPA_N PF01286.18 32 ZNF415-201 - 555 2.4e-07 30.7 35.3 8 11 0.02 11 6.1 0.1 3 12 441 450 439 457 0.90 XPA protein N-terminal XPA_N PF01286.18 32 ZNF415-201 - 555 2.4e-07 30.7 35.3 9 11 0.15 87 3.3 0.0 3 12 469 478 467 485 0.89 XPA protein N-terminal XPA_N PF01286.18 32 ZNF415-201 - 555 2.4e-07 30.7 35.3 10 11 0.031 17 5.5 0.1 3 12 497 506 495 507 0.88 XPA protein N-terminal XPA_N PF01286.18 32 ZNF415-201 - 555 2.4e-07 30.7 35.3 11 11 0.12 67 3.7 0.1 3 12 525 534 523 535 0.88 XPA protein N-terminal # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF415-201.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF415-201.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF415-201.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF415-201.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF415-201.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:05:36 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZNF415-202 - 555 1.1e-90 294.4 75.8 1 13 0.21 1.2e+02 3.4 0.0 12 23 213 224 211 227 0.86 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF415-202 - 555 1.1e-90 294.4 75.8 2 13 1.8e-06 0.00099 19.4 0.1 8 25 236 254 229 255 0.81 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF415-202 - 555 1.1e-90 294.4 75.8 3 13 1.6e-10 9.2e-08 32.2 0.4 1 25 258 282 258 283 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF415-202 - 555 1.1e-90 294.4 75.8 4 13 1.3e-10 7.5e-08 32.5 0.9 4 25 289 310 287 311 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF415-202 - 555 1.1e-90 294.4 75.8 5 13 1.7e-09 9.6e-07 29.0 0.6 4 25 317 338 315 338 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF415-202 - 555 1.1e-90 294.4 75.8 6 13 3.3e-08 1.9e-05 24.9 0.5 2 25 343 366 342 367 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF415-202 - 555 1.1e-90 294.4 75.8 7 13 8.8e-11 5e-08 33.0 0.3 2 25 371 394 370 395 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF415-202 - 555 1.1e-90 294.4 75.8 8 13 2.4e-10 1.4e-07 31.7 0.4 1 25 398 422 398 423 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF415-202 - 555 1.1e-90 294.4 75.8 9 13 6.6e-11 3.7e-08 33.4 1.6 1 25 426 450 426 450 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF415-202 - 555 1.1e-90 294.4 75.8 10 13 3.2e-09 1.8e-06 28.1 0.3 1 25 454 478 454 478 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF415-202 - 555 1.1e-90 294.4 75.8 11 13 1.9e-09 1.1e-06 28.8 0.4 2 25 483 506 482 506 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF415-202 - 555 1.1e-90 294.4 75.8 12 13 1.2e-11 6.7e-09 35.8 0.5 1 25 510 534 510 534 0.97 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF415-202 - 555 1.1e-90 294.4 75.8 13 13 0.00045 0.25 11.8 0.5 1 16 538 553 538 553 0.94 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZNF415-202 - 555 1.5e-67 220.4 87.5 1 12 9.7 5.4e+03 -1.8 0.1 5 13 106 114 96 116 0.69 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF415-202 - 555 1.5e-67 220.4 87.5 2 12 9e-10 5e-07 29.8 0.4 1 23 244 266 244 266 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF415-202 - 555 1.5e-67 220.4 87.5 3 12 8.3e-08 4.7e-05 23.6 3.3 1 23 272 294 272 294 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF415-202 - 555 1.5e-67 220.4 87.5 4 12 2.2e-07 0.00012 22.3 3.5 1 23 300 322 300 322 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF415-202 - 555 1.5e-67 220.4 87.5 5 12 1.7e-07 9.3e-05 22.7 0.4 1 23 328 350 328 350 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF415-202 - 555 1.5e-67 220.4 87.5 6 12 2.6e-09 1.5e-06 28.3 0.6 1 23 356 378 356 378 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF415-202 - 555 1.5e-67 220.4 87.5 7 12 2.8e-09 1.6e-06 28.2 0.4 1 23 384 406 384 406 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF415-202 - 555 1.5e-67 220.4 87.5 8 12 3.9e-09 2.2e-06 27.8 2.4 1 23 412 434 412 434 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF415-202 - 555 1.5e-67 220.4 87.5 9 12 1e-07 5.8e-05 23.3 1.0 1 23 440 462 440 462 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF415-202 - 555 1.5e-67 220.4 87.5 10 12 1.5e-06 0.00085 19.7 1.4 1 23 468 490 468 490 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF415-202 - 555 1.5e-67 220.4 87.5 11 12 2e-08 1.1e-05 25.6 0.5 1 23 496 518 496 518 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF415-202 - 555 1.5e-67 220.4 87.5 12 12 3.1e-08 1.7e-05 25.0 0.7 1 23 524 546 524 546 0.98 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZNF415-202 - 555 2.8e-37 124.2 78.2 1 11 1.6e-07 8.9e-05 23.0 0.6 1 23 244 266 244 267 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF415-202 - 555 2.8e-37 124.2 78.2 2 11 0.0007 0.39 11.7 2.6 1 23 272 294 272 295 0.90 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF415-202 - 555 2.8e-37 124.2 78.2 3 11 0.00028 0.16 12.9 2.4 1 23 300 322 300 323 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF415-202 - 555 2.8e-37 124.2 78.2 4 11 0.00011 0.059 14.2 0.4 1 23 328 350 328 351 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF415-202 - 555 2.8e-37 124.2 78.2 5 11 1.1e-05 0.0062 17.3 0.5 1 23 356 378 356 379 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF415-202 - 555 2.8e-37 124.2 78.2 6 11 1e-06 0.00056 20.5 0.6 1 23 384 406 384 407 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF415-202 - 555 2.8e-37 124.2 78.2 7 11 2.3e-05 0.013 16.3 1.9 1 23 412 434 412 435 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF415-202 - 555 2.8e-37 124.2 78.2 8 11 0.00033 0.18 12.7 0.8 1 23 440 462 440 463 0.91 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF415-202 - 555 2.8e-37 124.2 78.2 9 11 0.00011 0.061 14.2 1.2 1 23 468 490 468 491 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF415-202 - 555 2.8e-37 124.2 78.2 10 11 3.9e-05 0.022 15.6 0.3 1 23 496 518 496 519 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF415-202 - 555 2.8e-37 124.2 78.2 11 11 3.1e-05 0.017 15.9 0.5 1 23 524 546 524 547 0.92 C2H2-type zinc finger KRAB PF01352.27 42 ZNF415-202 - 555 1.5e-24 85.4 0.5 1 1 5.2e-27 2.9e-24 84.4 0.5 2 42 6 46 5 46 0.97 KRAB box zf-C2H2_11 PF16622.5 29 ZNF415-202 - 555 4.2e-20 71.2 46.4 1 11 0.0015 0.85 9.4 0.1 5 25 244 264 241 266 0.90 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF415-202 - 555 4.2e-20 71.2 46.4 2 11 0.045 25 4.7 0.8 5 25 272 292 269 294 0.87 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF415-202 - 555 4.2e-20 71.2 46.4 3 11 2.3 1.3e+03 -0.7 0.7 5 16 300 311 298 319 0.76 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF415-202 - 555 4.2e-20 71.2 46.4 4 11 0.023 13 5.7 0.1 7 26 330 349 327 350 0.88 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF415-202 - 555 4.2e-20 71.2 46.4 5 11 0.001 0.57 10.0 0.2 5 26 356 377 354 378 0.94 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF415-202 - 555 4.2e-20 71.2 46.4 6 11 1.1e-05 0.0064 16.2 0.1 5 26 384 405 381 406 0.94 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF415-202 - 555 4.2e-20 71.2 46.4 7 11 0.013 7.1 6.5 0.2 5 25 412 432 409 434 0.88 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF415-202 - 555 4.2e-20 71.2 46.4 8 11 0.0043 2.4 8.0 0.1 5 26 440 461 437 462 0.88 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF415-202 - 555 4.2e-20 71.2 46.4 9 11 0.00043 0.24 11.2 0.3 5 26 468 489 465 490 0.91 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF415-202 - 555 4.2e-20 71.2 46.4 10 11 3.1e-05 0.018 14.8 0.0 5 26 496 517 493 518 0.90 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF415-202 - 555 4.2e-20 71.2 46.4 11 11 0.00022 0.12 12.1 0.2 5 26 524 545 522 548 0.90 zinc-finger C2H2-type zf-C2H2_6 PF13912.6 27 ZNF415-202 - 555 4.7e-18 64.7 75.3 1 11 0.00075 0.42 10.7 0.1 2 12 244 254 244 263 0.92 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF415-202 - 555 4.7e-18 64.7 75.3 2 11 0.0028 1.6 8.8 0.9 2 12 272 282 272 292 0.95 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF415-202 - 555 4.7e-18 64.7 75.3 3 11 0.03 17 5.6 2.4 2 13 300 311 300 322 0.88 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF415-202 - 555 4.7e-18 64.7 75.3 4 11 0.0076 4.3 7.5 0.9 2 12 328 338 328 338 0.92 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF415-202 - 555 4.7e-18 64.7 75.3 5 11 6.1e-05 0.034 14.1 0.7 2 24 356 378 356 381 0.88 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF415-202 - 555 4.7e-18 64.7 75.3 6 11 0.00031 0.17 11.9 0.1 2 12 384 394 384 405 0.88 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF415-202 - 555 4.7e-18 64.7 75.3 7 11 0.0004 0.23 11.5 4.3 2 22 412 432 412 435 0.74 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF415-202 - 555 4.7e-18 64.7 75.3 8 11 0.00083 0.46 10.5 1.1 2 20 440 458 440 462 0.89 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF415-202 - 555 4.7e-18 64.7 75.3 9 11 0.0035 2 8.5 1.7 2 20 468 486 468 490 0.89 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF415-202 - 555 4.7e-18 64.7 75.3 10 11 0.00036 0.2 11.7 0.3 2 12 496 506 496 515 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF415-202 - 555 4.7e-18 64.7 75.3 11 11 0.006 3.3 7.8 0.2 2 12 524 534 524 547 0.92 C2H2-type zinc finger Zn-ribbon_8 PF09723.10 40 ZNF415-202 - 555 9.8e-16 57.6 54.2 1 11 0.0043 2.4 8.3 3.6 6 35 244 280 243 283 0.78 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF415-202 - 555 9.8e-16 57.6 54.2 2 11 0.07 39 4.5 6.4 6 34 272 307 271 311 0.81 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF415-202 - 555 9.8e-16 57.6 54.2 3 11 0.00079 0.44 10.7 4.9 6 34 300 335 299 341 0.85 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF415-202 - 555 9.8e-16 57.6 54.2 4 11 0.0075 4.2 7.6 0.3 6 19 328 341 327 345 0.86 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF415-202 - 555 9.8e-16 57.6 54.2 5 11 2.5e-05 0.014 15.5 4.1 6 34 356 391 355 395 0.91 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF415-202 - 555 9.8e-16 57.6 54.2 6 11 0.0016 0.91 9.7 0.3 6 19 384 397 383 404 0.84 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF415-202 - 555 9.8e-16 57.6 54.2 7 11 0.00013 0.07 13.3 4.5 6 34 412 447 411 452 0.85 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF415-202 - 555 9.8e-16 57.6 54.2 8 11 0.0029 1.6 8.9 0.3 6 19 440 453 438 462 0.86 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF415-202 - 555 9.8e-16 57.6 54.2 9 11 0.0021 1.2 9.4 0.1 6 20 468 482 467 491 0.85 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF415-202 - 555 9.8e-16 57.6 54.2 10 11 8.1e-05 0.045 13.9 3.1 6 34 496 531 495 536 0.85 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF415-202 - 555 9.8e-16 57.6 54.2 11 11 0.0033 1.9 8.7 0.2 6 18 524 536 523 546 0.88 Zinc ribbon domain zf_UBZ PF18439.1 32 ZNF415-202 - 555 8.3e-14 50.9 45.2 1 11 0.044 25 4.6 0.0 2 14 243 255 242 262 0.83 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF415-202 - 555 8.3e-14 50.9 45.2 2 11 0.31 1.8e+02 1.9 1.3 3 13 272 282 270 286 0.86 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF415-202 - 555 8.3e-14 50.9 45.2 3 11 0.28 1.6e+02 2.0 0.9 3 14 300 311 298 315 0.86 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF415-202 - 555 8.3e-14 50.9 45.2 4 11 0.0016 0.9 9.2 0.1 3 20 328 346 326 347 0.81 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF415-202 - 555 8.3e-14 50.9 45.2 5 11 0.0008 0.45 10.2 0.1 3 21 356 375 354 375 0.92 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF415-202 - 555 8.3e-14 50.9 45.2 6 11 0.0053 3 7.5 0.1 3 16 384 398 382 402 0.81 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF415-202 - 555 8.3e-14 50.9 45.2 7 11 0.012 6.5 6.4 0.1 3 20 412 430 410 431 0.79 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF415-202 - 555 8.3e-14 50.9 45.2 8 11 0.00093 0.52 9.9 0.2 3 21 440 459 438 459 0.92 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF415-202 - 555 8.3e-14 50.9 45.2 9 11 0.0016 0.9 9.2 0.1 3 21 468 487 466 487 0.92 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF415-202 - 555 8.3e-14 50.9 45.2 10 11 0.0046 2.6 7.7 0.1 3 20 496 514 494 515 0.80 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF415-202 - 555 8.3e-14 50.9 45.2 11 11 0.0032 1.8 8.2 0.1 3 14 524 535 522 542 0.90 Ubiquitin-Binding Zinc Finger C1_1 PF00130.22 53 ZNF415-202 - 555 6e-11 42.0 44.8 1 10 0.066 37 4.3 0.2 22 38 237 253 219 259 0.64 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF415-202 - 555 6e-11 42.0 44.8 2 10 0.00035 0.19 11.6 3.4 2 47 262 319 262 325 0.88 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF415-202 - 555 6e-11 42.0 44.8 3 10 0.018 10 6.1 2.6 4 37 293 336 290 340 0.82 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF415-202 - 555 6e-11 42.0 44.8 4 10 0.0032 1.8 8.5 1.6 9 37 325 364 318 368 0.85 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF415-202 - 555 6e-11 42.0 44.8 5 10 0.049 28 4.7 0.2 5 23 378 395 373 400 0.74 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF415-202 - 555 6e-11 42.0 44.8 6 10 5.8e-05 0.032 14.1 0.9 2 37 402 448 402 454 0.87 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF415-202 - 555 6e-11 42.0 44.8 7 10 0.0019 1.1 9.2 1.7 4 35 433 474 426 482 0.79 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF415-202 - 555 6e-11 42.0 44.8 8 10 0.0023 1.3 9.0 2.6 1 36 458 503 458 505 0.83 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF415-202 - 555 6e-11 42.0 44.8 9 10 0.00013 0.071 13.0 1.7 1 37 486 532 486 535 0.86 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF415-202 - 555 6e-11 42.0 44.8 10 10 0.0023 1.3 9.0 0.3 1 22 514 537 514 548 0.79 Phorbol esters/diacylglycerol binding domain (C1 domain) XPA_N PF01286.18 32 ZNF415-202 - 555 2.4e-07 30.7 35.3 1 11 0.26 1.5e+02 2.6 0.0 3 12 245 254 244 265 0.84 XPA protein N-terminal XPA_N PF01286.18 32 ZNF415-202 - 555 2.4e-07 30.7 35.3 2 11 0.31 1.8e+02 2.3 1.0 3 12 273 282 271 286 0.89 XPA protein N-terminal XPA_N PF01286.18 32 ZNF415-202 - 555 2.4e-07 30.7 35.3 3 11 0.32 1.8e+02 2.3 0.1 3 11 301 309 299 313 0.87 XPA protein N-terminal XPA_N PF01286.18 32 ZNF415-202 - 555 2.4e-07 30.7 35.3 4 11 0.012 6.5 6.9 0.0 3 12 329 338 327 346 0.86 XPA protein N-terminal XPA_N PF01286.18 32 ZNF415-202 - 555 2.4e-07 30.7 35.3 5 11 0.042 24 5.1 0.1 3 13 357 367 355 374 0.84 XPA protein N-terminal XPA_N PF01286.18 32 ZNF415-202 - 555 2.4e-07 30.7 35.3 6 11 0.042 24 5.1 0.0 3 13 385 395 383 403 0.85 XPA protein N-terminal XPA_N PF01286.18 32 ZNF415-202 - 555 2.4e-07 30.7 35.3 7 11 0.088 49 4.1 0.1 3 11 413 421 411 428 0.88 XPA protein N-terminal XPA_N PF01286.18 32 ZNF415-202 - 555 2.4e-07 30.7 35.3 8 11 0.02 11 6.1 0.1 3 12 441 450 439 457 0.90 XPA protein N-terminal XPA_N PF01286.18 32 ZNF415-202 - 555 2.4e-07 30.7 35.3 9 11 0.15 87 3.3 0.0 3 12 469 478 467 485 0.89 XPA protein N-terminal XPA_N PF01286.18 32 ZNF415-202 - 555 2.4e-07 30.7 35.3 10 11 0.031 17 5.5 0.1 3 12 497 506 495 507 0.88 XPA protein N-terminal XPA_N PF01286.18 32 ZNF415-202 - 555 2.4e-07 30.7 35.3 11 11 0.12 67 3.7 0.1 3 12 525 534 523 535 0.88 XPA protein N-terminal # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF415-202.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF415-202.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF415-202.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF415-202.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF415-202.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:05:37 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZNF415-203 - 555 1.1e-90 294.4 75.8 1 13 0.21 1.2e+02 3.4 0.0 12 23 213 224 211 227 0.86 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF415-203 - 555 1.1e-90 294.4 75.8 2 13 1.8e-06 0.00099 19.4 0.1 8 25 236 254 229 255 0.81 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF415-203 - 555 1.1e-90 294.4 75.8 3 13 1.6e-10 9.2e-08 32.2 0.4 1 25 258 282 258 283 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF415-203 - 555 1.1e-90 294.4 75.8 4 13 1.3e-10 7.5e-08 32.5 0.9 4 25 289 310 287 311 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF415-203 - 555 1.1e-90 294.4 75.8 5 13 1.7e-09 9.6e-07 29.0 0.6 4 25 317 338 315 338 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF415-203 - 555 1.1e-90 294.4 75.8 6 13 3.3e-08 1.9e-05 24.9 0.5 2 25 343 366 342 367 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF415-203 - 555 1.1e-90 294.4 75.8 7 13 8.8e-11 5e-08 33.0 0.3 2 25 371 394 370 395 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF415-203 - 555 1.1e-90 294.4 75.8 8 13 2.4e-10 1.4e-07 31.7 0.4 1 25 398 422 398 423 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF415-203 - 555 1.1e-90 294.4 75.8 9 13 6.6e-11 3.7e-08 33.4 1.6 1 25 426 450 426 450 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF415-203 - 555 1.1e-90 294.4 75.8 10 13 3.2e-09 1.8e-06 28.1 0.3 1 25 454 478 454 478 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF415-203 - 555 1.1e-90 294.4 75.8 11 13 1.9e-09 1.1e-06 28.8 0.4 2 25 483 506 482 506 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF415-203 - 555 1.1e-90 294.4 75.8 12 13 1.2e-11 6.7e-09 35.8 0.5 1 25 510 534 510 534 0.97 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF415-203 - 555 1.1e-90 294.4 75.8 13 13 0.00045 0.25 11.8 0.5 1 16 538 553 538 553 0.94 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZNF415-203 - 555 1.5e-67 220.4 87.5 1 12 9.7 5.4e+03 -1.8 0.1 5 13 106 114 96 116 0.69 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF415-203 - 555 1.5e-67 220.4 87.5 2 12 9e-10 5e-07 29.8 0.4 1 23 244 266 244 266 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF415-203 - 555 1.5e-67 220.4 87.5 3 12 8.3e-08 4.7e-05 23.6 3.3 1 23 272 294 272 294 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF415-203 - 555 1.5e-67 220.4 87.5 4 12 2.2e-07 0.00012 22.3 3.5 1 23 300 322 300 322 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF415-203 - 555 1.5e-67 220.4 87.5 5 12 1.7e-07 9.3e-05 22.7 0.4 1 23 328 350 328 350 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF415-203 - 555 1.5e-67 220.4 87.5 6 12 2.6e-09 1.5e-06 28.3 0.6 1 23 356 378 356 378 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF415-203 - 555 1.5e-67 220.4 87.5 7 12 2.8e-09 1.6e-06 28.2 0.4 1 23 384 406 384 406 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF415-203 - 555 1.5e-67 220.4 87.5 8 12 3.9e-09 2.2e-06 27.8 2.4 1 23 412 434 412 434 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF415-203 - 555 1.5e-67 220.4 87.5 9 12 1e-07 5.8e-05 23.3 1.0 1 23 440 462 440 462 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF415-203 - 555 1.5e-67 220.4 87.5 10 12 1.5e-06 0.00085 19.7 1.4 1 23 468 490 468 490 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF415-203 - 555 1.5e-67 220.4 87.5 11 12 2e-08 1.1e-05 25.6 0.5 1 23 496 518 496 518 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF415-203 - 555 1.5e-67 220.4 87.5 12 12 3.1e-08 1.7e-05 25.0 0.7 1 23 524 546 524 546 0.98 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZNF415-203 - 555 2.8e-37 124.2 78.2 1 11 1.6e-07 8.9e-05 23.0 0.6 1 23 244 266 244 267 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF415-203 - 555 2.8e-37 124.2 78.2 2 11 0.0007 0.39 11.7 2.6 1 23 272 294 272 295 0.90 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF415-203 - 555 2.8e-37 124.2 78.2 3 11 0.00028 0.16 12.9 2.4 1 23 300 322 300 323 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF415-203 - 555 2.8e-37 124.2 78.2 4 11 0.00011 0.059 14.2 0.4 1 23 328 350 328 351 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF415-203 - 555 2.8e-37 124.2 78.2 5 11 1.1e-05 0.0062 17.3 0.5 1 23 356 378 356 379 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF415-203 - 555 2.8e-37 124.2 78.2 6 11 1e-06 0.00056 20.5 0.6 1 23 384 406 384 407 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF415-203 - 555 2.8e-37 124.2 78.2 7 11 2.3e-05 0.013 16.3 1.9 1 23 412 434 412 435 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF415-203 - 555 2.8e-37 124.2 78.2 8 11 0.00033 0.18 12.7 0.8 1 23 440 462 440 463 0.91 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF415-203 - 555 2.8e-37 124.2 78.2 9 11 0.00011 0.061 14.2 1.2 1 23 468 490 468 491 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF415-203 - 555 2.8e-37 124.2 78.2 10 11 3.9e-05 0.022 15.6 0.3 1 23 496 518 496 519 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF415-203 - 555 2.8e-37 124.2 78.2 11 11 3.1e-05 0.017 15.9 0.5 1 23 524 546 524 547 0.92 C2H2-type zinc finger KRAB PF01352.27 42 ZNF415-203 - 555 1.6e-24 85.3 0.2 1 1 5.5e-27 3.1e-24 84.3 0.2 2 42 6 46 5 46 0.98 KRAB box zf-C2H2_11 PF16622.5 29 ZNF415-203 - 555 4.2e-20 71.2 46.4 1 11 0.0015 0.85 9.4 0.1 5 25 244 264 241 266 0.90 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF415-203 - 555 4.2e-20 71.2 46.4 2 11 0.045 25 4.7 0.8 5 25 272 292 269 294 0.87 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF415-203 - 555 4.2e-20 71.2 46.4 3 11 2.3 1.3e+03 -0.7 0.7 5 16 300 311 298 319 0.76 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF415-203 - 555 4.2e-20 71.2 46.4 4 11 0.023 13 5.7 0.1 7 26 330 349 327 350 0.88 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF415-203 - 555 4.2e-20 71.2 46.4 5 11 0.001 0.57 10.0 0.2 5 26 356 377 354 378 0.94 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF415-203 - 555 4.2e-20 71.2 46.4 6 11 1.1e-05 0.0064 16.2 0.1 5 26 384 405 381 406 0.94 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF415-203 - 555 4.2e-20 71.2 46.4 7 11 0.013 7.1 6.5 0.2 5 25 412 432 409 434 0.88 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF415-203 - 555 4.2e-20 71.2 46.4 8 11 0.0043 2.4 8.0 0.1 5 26 440 461 437 462 0.88 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF415-203 - 555 4.2e-20 71.2 46.4 9 11 0.00043 0.24 11.2 0.3 5 26 468 489 465 490 0.91 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF415-203 - 555 4.2e-20 71.2 46.4 10 11 3.1e-05 0.018 14.8 0.0 5 26 496 517 493 518 0.90 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF415-203 - 555 4.2e-20 71.2 46.4 11 11 0.00022 0.12 12.1 0.2 5 26 524 545 522 548 0.90 zinc-finger C2H2-type zf-C2H2_6 PF13912.6 27 ZNF415-203 - 555 4.7e-18 64.7 75.3 1 11 0.00075 0.42 10.7 0.1 2 12 244 254 244 263 0.92 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF415-203 - 555 4.7e-18 64.7 75.3 2 11 0.0028 1.6 8.8 0.9 2 12 272 282 272 292 0.95 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF415-203 - 555 4.7e-18 64.7 75.3 3 11 0.03 17 5.6 2.4 2 13 300 311 300 322 0.88 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF415-203 - 555 4.7e-18 64.7 75.3 4 11 0.0076 4.3 7.5 0.9 2 12 328 338 328 338 0.92 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF415-203 - 555 4.7e-18 64.7 75.3 5 11 6.1e-05 0.034 14.1 0.7 2 24 356 378 356 381 0.88 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF415-203 - 555 4.7e-18 64.7 75.3 6 11 0.00031 0.17 11.9 0.1 2 12 384 394 384 405 0.88 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF415-203 - 555 4.7e-18 64.7 75.3 7 11 0.0004 0.23 11.5 4.3 2 22 412 432 412 435 0.74 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF415-203 - 555 4.7e-18 64.7 75.3 8 11 0.00083 0.46 10.5 1.1 2 20 440 458 440 462 0.89 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF415-203 - 555 4.7e-18 64.7 75.3 9 11 0.0035 2 8.5 1.7 2 20 468 486 468 490 0.89 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF415-203 - 555 4.7e-18 64.7 75.3 10 11 0.00036 0.2 11.7 0.3 2 12 496 506 496 515 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF415-203 - 555 4.7e-18 64.7 75.3 11 11 0.006 3.3 7.8 0.2 2 12 524 534 524 547 0.92 C2H2-type zinc finger Zn-ribbon_8 PF09723.10 40 ZNF415-203 - 555 9.8e-16 57.6 54.2 1 11 0.0043 2.4 8.3 3.6 6 35 244 280 243 283 0.78 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF415-203 - 555 9.8e-16 57.6 54.2 2 11 0.07 39 4.5 6.4 6 34 272 307 271 311 0.81 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF415-203 - 555 9.8e-16 57.6 54.2 3 11 0.00079 0.44 10.7 4.9 6 34 300 335 299 341 0.85 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF415-203 - 555 9.8e-16 57.6 54.2 4 11 0.0075 4.2 7.6 0.3 6 19 328 341 327 345 0.86 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF415-203 - 555 9.8e-16 57.6 54.2 5 11 2.5e-05 0.014 15.5 4.1 6 34 356 391 355 395 0.91 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF415-203 - 555 9.8e-16 57.6 54.2 6 11 0.0016 0.91 9.7 0.3 6 19 384 397 383 404 0.84 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF415-203 - 555 9.8e-16 57.6 54.2 7 11 0.00013 0.07 13.3 4.5 6 34 412 447 411 452 0.85 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF415-203 - 555 9.8e-16 57.6 54.2 8 11 0.0029 1.6 8.9 0.3 6 19 440 453 438 462 0.86 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF415-203 - 555 9.8e-16 57.6 54.2 9 11 0.0021 1.2 9.4 0.1 6 20 468 482 467 491 0.85 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF415-203 - 555 9.8e-16 57.6 54.2 10 11 8.1e-05 0.045 13.9 3.1 6 34 496 531 495 536 0.85 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF415-203 - 555 9.8e-16 57.6 54.2 11 11 0.0033 1.9 8.7 0.2 6 18 524 536 523 546 0.88 Zinc ribbon domain zf_UBZ PF18439.1 32 ZNF415-203 - 555 8.3e-14 50.9 45.2 1 11 0.044 25 4.6 0.0 2 14 243 255 242 262 0.83 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF415-203 - 555 8.3e-14 50.9 45.2 2 11 0.31 1.8e+02 1.9 1.3 3 13 272 282 270 286 0.86 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF415-203 - 555 8.3e-14 50.9 45.2 3 11 0.28 1.6e+02 2.0 0.9 3 14 300 311 298 315 0.86 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF415-203 - 555 8.3e-14 50.9 45.2 4 11 0.0016 0.9 9.2 0.1 3 20 328 346 326 347 0.81 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF415-203 - 555 8.3e-14 50.9 45.2 5 11 0.0008 0.45 10.2 0.1 3 21 356 375 354 375 0.92 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF415-203 - 555 8.3e-14 50.9 45.2 6 11 0.0053 3 7.5 0.1 3 16 384 398 382 402 0.81 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF415-203 - 555 8.3e-14 50.9 45.2 7 11 0.012 6.5 6.4 0.1 3 20 412 430 410 431 0.79 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF415-203 - 555 8.3e-14 50.9 45.2 8 11 0.00093 0.52 9.9 0.2 3 21 440 459 438 459 0.92 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF415-203 - 555 8.3e-14 50.9 45.2 9 11 0.0016 0.9 9.2 0.1 3 21 468 487 466 487 0.92 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF415-203 - 555 8.3e-14 50.9 45.2 10 11 0.0046 2.6 7.7 0.1 3 20 496 514 494 515 0.80 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF415-203 - 555 8.3e-14 50.9 45.2 11 11 0.0032 1.8 8.2 0.1 3 14 524 535 522 542 0.90 Ubiquitin-Binding Zinc Finger C1_1 PF00130.22 53 ZNF415-203 - 555 6.1e-11 42.0 44.8 1 10 0.066 37 4.3 0.2 22 38 237 253 219 259 0.64 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF415-203 - 555 6.1e-11 42.0 44.8 2 10 0.00035 0.19 11.6 3.4 2 47 262 319 262 325 0.88 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF415-203 - 555 6.1e-11 42.0 44.8 3 10 0.018 10 6.1 2.6 4 37 293 336 290 340 0.82 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF415-203 - 555 6.1e-11 42.0 44.8 4 10 0.0032 1.8 8.5 1.6 9 37 325 364 318 368 0.85 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF415-203 - 555 6.1e-11 42.0 44.8 5 10 0.049 28 4.7 0.2 5 23 378 395 373 400 0.74 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF415-203 - 555 6.1e-11 42.0 44.8 6 10 5.8e-05 0.032 14.1 0.9 2 37 402 448 402 454 0.87 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF415-203 - 555 6.1e-11 42.0 44.8 7 10 0.0019 1.1 9.2 1.7 4 35 433 474 426 482 0.79 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF415-203 - 555 6.1e-11 42.0 44.8 8 10 0.0023 1.3 9.0 2.6 1 36 458 503 458 505 0.83 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF415-203 - 555 6.1e-11 42.0 44.8 9 10 0.00013 0.071 13.0 1.7 1 37 486 532 486 535 0.86 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF415-203 - 555 6.1e-11 42.0 44.8 10 10 0.0023 1.3 9.0 0.3 1 22 514 537 514 548 0.79 Phorbol esters/diacylglycerol binding domain (C1 domain) XPA_N PF01286.18 32 ZNF415-203 - 555 2.4e-07 30.6 35.3 1 11 0.26 1.5e+02 2.6 0.0 3 12 245 254 244 265 0.84 XPA protein N-terminal XPA_N PF01286.18 32 ZNF415-203 - 555 2.4e-07 30.6 35.3 2 11 0.31 1.8e+02 2.3 1.0 3 12 273 282 271 286 0.89 XPA protein N-terminal XPA_N PF01286.18 32 ZNF415-203 - 555 2.4e-07 30.6 35.3 3 11 0.32 1.8e+02 2.3 0.1 3 11 301 309 299 313 0.87 XPA protein N-terminal XPA_N PF01286.18 32 ZNF415-203 - 555 2.4e-07 30.6 35.3 4 11 0.012 6.5 6.9 0.0 3 12 329 338 327 346 0.86 XPA protein N-terminal XPA_N PF01286.18 32 ZNF415-203 - 555 2.4e-07 30.6 35.3 5 11 0.042 24 5.1 0.1 3 13 357 367 355 374 0.84 XPA protein N-terminal XPA_N PF01286.18 32 ZNF415-203 - 555 2.4e-07 30.6 35.3 6 11 0.042 24 5.1 0.0 3 13 385 395 383 403 0.85 XPA protein N-terminal XPA_N PF01286.18 32 ZNF415-203 - 555 2.4e-07 30.6 35.3 7 11 0.088 49 4.1 0.1 3 11 413 421 411 428 0.88 XPA protein N-terminal XPA_N PF01286.18 32 ZNF415-203 - 555 2.4e-07 30.6 35.3 8 11 0.02 11 6.1 0.1 3 12 441 450 439 457 0.90 XPA protein N-terminal XPA_N PF01286.18 32 ZNF415-203 - 555 2.4e-07 30.6 35.3 9 11 0.15 87 3.3 0.0 3 12 469 478 467 485 0.89 XPA protein N-terminal XPA_N PF01286.18 32 ZNF415-203 - 555 2.4e-07 30.6 35.3 10 11 0.031 17 5.5 0.1 3 12 497 506 495 507 0.88 XPA protein N-terminal XPA_N PF01286.18 32 ZNF415-203 - 555 2.4e-07 30.6 35.3 11 11 0.12 67 3.7 0.1 3 12 525 534 523 535 0.88 XPA protein N-terminal # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF415-203.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF415-203.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF415-203.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF415-203.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF415-203.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:05:37 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZNF415-204 - 603 3.6e-90 292.7 75.8 1 13 0.22 1.3e+02 3.2 0.0 12 23 261 272 259 275 0.86 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF415-204 - 603 3.6e-90 292.7 75.8 2 13 1.8e-06 0.0011 19.3 0.1 8 25 284 302 277 303 0.81 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF415-204 - 603 3.6e-90 292.7 75.8 3 13 1.7e-10 1e-07 32.0 0.4 1 25 306 330 306 331 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF415-204 - 603 3.6e-90 292.7 75.8 4 13 1.4e-10 8.3e-08 32.3 0.9 4 25 337 358 335 359 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF415-204 - 603 3.6e-90 292.7 75.8 5 13 1.8e-09 1.1e-06 28.8 0.6 4 25 365 386 363 386 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF415-204 - 603 3.6e-90 292.7 75.8 6 13 3.5e-08 2.1e-05 24.8 0.5 2 25 391 414 390 415 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF415-204 - 603 3.6e-90 292.7 75.8 7 13 9.1e-11 5.5e-08 32.9 0.3 2 25 419 442 418 443 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF415-204 - 603 3.6e-90 292.7 75.8 8 13 2.5e-10 1.5e-07 31.5 0.4 1 25 446 470 446 471 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF415-204 - 603 3.6e-90 292.7 75.8 9 13 6.8e-11 4.1e-08 33.3 1.6 1 25 474 498 474 498 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF415-204 - 603 3.6e-90 292.7 75.8 10 13 3.3e-09 2e-06 28.0 0.3 1 25 502 526 502 526 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF415-204 - 603 3.6e-90 292.7 75.8 11 13 2e-09 1.2e-06 28.7 0.4 2 25 531 554 530 554 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF415-204 - 603 3.6e-90 292.7 75.8 12 13 1.2e-11 7.4e-09 35.6 0.5 1 25 558 582 558 582 0.97 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF415-204 - 603 3.6e-90 292.7 75.8 13 13 0.00047 0.28 11.7 0.5 1 16 586 601 586 601 0.94 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZNF415-204 - 603 1e-67 221.0 85.6 1 12 10 6e+03 -1.9 0.1 5 13 154 162 144 164 0.69 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF415-204 - 603 1e-67 221.0 85.6 2 12 9.3e-10 5.5e-07 29.7 0.4 1 23 292 314 292 314 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF415-204 - 603 1e-67 221.0 85.6 3 12 8.6e-08 5.1e-05 23.5 3.3 1 23 320 342 320 342 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF415-204 - 603 1e-67 221.0 85.6 4 12 2.3e-07 0.00014 22.2 3.5 1 23 348 370 348 370 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF415-204 - 603 1e-67 221.0 85.6 5 12 1.7e-07 0.0001 22.5 0.4 1 23 376 398 376 398 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF415-204 - 603 1e-67 221.0 85.6 6 12 2.7e-09 1.6e-06 28.2 0.6 1 23 404 426 404 426 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF415-204 - 603 1e-67 221.0 85.6 7 12 2.9e-09 1.8e-06 28.1 0.4 1 23 432 454 432 454 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF415-204 - 603 1e-67 221.0 85.6 8 12 4e-09 2.4e-06 27.7 2.4 1 23 460 482 460 482 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF415-204 - 603 1e-67 221.0 85.6 9 12 1.1e-07 6.4e-05 23.2 1.0 1 23 488 510 488 510 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF415-204 - 603 1e-67 221.0 85.6 10 12 1.6e-06 0.00093 19.5 1.4 1 23 516 538 516 538 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF415-204 - 603 1e-67 221.0 85.6 11 12 2e-08 1.2e-05 25.5 0.5 1 23 544 566 544 566 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF415-204 - 603 1e-67 221.0 85.6 12 12 3.2e-08 1.9e-05 24.8 0.7 1 23 572 594 572 594 0.98 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZNF415-204 - 603 2.1e-35 118.3 83.0 1 11 1.6e-07 9.8e-05 22.9 0.6 1 23 292 314 292 315 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF415-204 - 603 2.1e-35 118.3 83.0 2 11 0.00073 0.43 11.5 2.6 1 23 320 342 320 343 0.90 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF415-204 - 603 2.1e-35 118.3 83.0 3 11 0.00029 0.18 12.8 2.4 1 23 348 370 348 371 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF415-204 - 603 2.1e-35 118.3 83.0 4 11 0.00011 0.066 14.1 0.4 1 23 376 398 376 399 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF415-204 - 603 2.1e-35 118.3 83.0 5 11 1.1e-05 0.0068 17.1 0.5 1 23 404 426 404 427 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF415-204 - 603 2.1e-35 118.3 83.0 6 11 1e-06 0.00062 20.4 0.6 1 23 432 454 432 455 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF415-204 - 603 2.1e-35 118.3 83.0 7 11 2.4e-05 0.014 16.2 1.9 1 23 460 482 460 483 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF415-204 - 603 2.1e-35 118.3 83.0 8 11 0.00034 0.2 12.6 0.8 1 23 488 510 488 511 0.91 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF415-204 - 603 2.1e-35 118.3 83.0 9 11 0.00011 0.067 14.1 1.2 1 23 516 538 516 539 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF415-204 - 603 2.1e-35 118.3 83.0 10 11 4e-05 0.024 15.4 0.3 1 23 544 566 544 567 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF415-204 - 603 2.1e-35 118.3 83.0 11 11 3.2e-05 0.019 15.8 0.5 1 23 572 594 572 595 0.92 C2H2-type zinc finger zf-C2H2_11 PF16622.5 29 ZNF415-204 - 603 1.2e-19 69.8 46.4 1 11 0.0016 0.93 9.3 0.1 5 25 292 312 289 314 0.90 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF415-204 - 603 1.2e-19 69.8 46.4 2 11 0.046 28 4.6 0.8 5 25 320 340 317 342 0.87 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF415-204 - 603 1.2e-19 69.8 46.4 3 11 2.4 1.4e+03 -0.9 0.7 5 15 348 358 346 367 0.76 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF415-204 - 603 1.2e-19 69.8 46.4 4 11 0.023 14 5.6 0.1 7 26 378 397 375 398 0.88 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF415-204 - 603 1.2e-19 69.8 46.4 5 11 0.001 0.63 9.9 0.2 5 26 404 425 402 426 0.94 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF415-204 - 603 1.2e-19 69.8 46.4 6 11 1.2e-05 0.007 16.1 0.1 5 26 432 453 429 454 0.94 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF415-204 - 603 1.2e-19 69.8 46.4 7 11 0.013 7.8 6.3 0.2 5 25 460 480 457 482 0.88 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF415-204 - 603 1.2e-19 69.8 46.4 8 11 0.0045 2.7 7.8 0.1 5 26 488 509 485 510 0.88 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF415-204 - 603 1.2e-19 69.8 46.4 9 11 0.00044 0.27 11.1 0.3 5 26 516 537 513 538 0.91 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF415-204 - 603 1.2e-19 69.8 46.4 10 11 3.2e-05 0.019 14.7 0.0 5 26 544 565 541 566 0.90 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF415-204 - 603 1.2e-19 69.8 46.4 11 11 0.00023 0.14 12.0 0.2 5 26 572 593 570 596 0.90 zinc-finger C2H2-type zf-C2H2_6 PF13912.6 27 ZNF415-204 - 603 1.3e-17 63.3 75.3 1 11 0.00077 0.46 10.5 0.1 2 12 292 302 292 311 0.92 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF415-204 - 603 1.3e-17 63.3 75.3 2 11 0.0029 1.7 8.7 0.9 2 12 320 330 320 340 0.95 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF415-204 - 603 1.3e-17 63.3 75.3 3 11 0.031 19 5.4 2.4 2 13 348 359 348 370 0.88 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF415-204 - 603 1.3e-17 63.3 75.3 4 11 0.0078 4.7 7.3 0.9 2 12 376 386 376 386 0.92 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF415-204 - 603 1.3e-17 63.3 75.3 5 11 6.3e-05 0.038 14.0 0.7 2 24 404 426 404 429 0.88 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF415-204 - 603 1.3e-17 63.3 75.3 6 11 0.00032 0.19 11.8 0.1 2 12 432 442 432 453 0.88 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF415-204 - 603 1.3e-17 63.3 75.3 7 11 0.00038 0.23 11.5 4.2 2 22 460 480 460 483 0.74 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF415-204 - 603 1.3e-17 63.3 75.3 8 11 0.00085 0.51 10.4 1.1 2 20 488 506 488 510 0.89 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF415-204 - 603 1.3e-17 63.3 75.3 9 11 0.0036 2.2 8.4 1.7 2 20 516 534 516 538 0.89 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF415-204 - 603 1.3e-17 63.3 75.3 10 11 0.00037 0.22 11.5 0.3 2 12 544 554 544 563 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF415-204 - 603 1.3e-17 63.3 75.3 11 11 0.0063 3.8 7.6 0.3 2 12 572 582 572 594 0.92 C2H2-type zinc finger Zn-ribbon_8 PF09723.10 40 ZNF415-204 - 603 1.3e-15 57.3 53.4 1 10 0.0046 2.7 8.2 3.7 6 35 292 328 291 331 0.78 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF415-204 - 603 1.3e-15 57.3 53.4 2 10 0.34 2e+02 2.2 6.8 6 32 320 353 319 353 0.79 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF415-204 - 603 1.3e-15 57.3 53.4 3 10 0.0006 0.36 11.0 4.5 6 34 348 383 347 390 0.85 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF415-204 - 603 1.3e-15 57.3 53.4 4 10 2.3e-05 0.014 15.5 4.0 6 34 404 439 403 443 0.91 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF415-204 - 603 1.3e-15 57.3 53.4 5 10 0.0017 0.99 9.6 0.3 6 19 432 445 431 452 0.84 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF415-204 - 603 1.3e-15 57.3 53.4 6 10 0.00011 0.063 13.4 4.2 6 34 460 495 459 500 0.85 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF415-204 - 603 1.3e-15 57.3 53.4 7 10 0.003 1.8 8.7 0.3 6 19 488 501 487 510 0.85 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF415-204 - 603 1.3e-15 57.3 53.4 8 10 0.0021 1.3 9.2 0.0 6 20 516 530 515 540 0.85 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF415-204 - 603 1.3e-15 57.3 53.4 9 10 9e-05 0.054 13.6 3.2 6 34 544 579 543 584 0.85 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF415-204 - 603 1.3e-15 57.3 53.4 10 10 0.0034 2 8.6 0.2 6 18 572 584 571 594 0.88 Zinc ribbon domain zf_UBZ PF18439.1 32 ZNF415-204 - 603 1.9e-13 49.7 45.2 1 11 0.045 27 4.5 0.0 2 14 291 303 290 310 0.83 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF415-204 - 603 1.9e-13 49.7 45.2 2 11 0.32 1.9e+02 1.7 1.3 3 13 320 330 318 334 0.86 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF415-204 - 603 1.9e-13 49.7 45.2 3 11 0.29 1.7e+02 1.9 0.9 3 14 348 359 346 363 0.86 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF415-204 - 603 1.9e-13 49.7 45.2 4 11 0.0017 0.99 9.1 0.1 3 20 376 394 374 395 0.81 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF415-204 - 603 1.9e-13 49.7 45.2 5 11 0.00083 0.49 10.0 0.1 3 21 404 423 402 423 0.92 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF415-204 - 603 1.9e-13 49.7 45.2 6 11 0.0055 3.3 7.4 0.1 3 16 432 446 430 450 0.81 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF415-204 - 603 1.9e-13 49.7 45.2 7 11 0.012 7.1 6.3 0.1 3 20 460 478 458 479 0.79 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF415-204 - 603 1.9e-13 49.7 45.2 8 11 0.00096 0.57 9.8 0.2 3 21 488 507 486 507 0.92 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF415-204 - 603 1.9e-13 49.7 45.2 9 11 0.0017 0.99 9.1 0.1 3 21 516 535 514 535 0.92 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF415-204 - 603 1.9e-13 49.7 45.2 10 11 0.0047 2.8 7.6 0.1 3 20 544 562 542 563 0.80 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF415-204 - 603 1.9e-13 49.7 45.2 11 11 0.0033 2 8.1 0.1 3 14 572 583 570 590 0.90 Ubiquitin-Binding Zinc Finger C1_1 PF00130.22 53 ZNF415-204 - 603 6.3e-11 42.0 43.8 1 10 0.068 41 4.2 0.2 22 38 285 301 267 307 0.64 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF415-204 - 603 6.3e-11 42.0 43.8 2 10 0.00032 0.19 11.6 3.2 2 47 310 367 310 373 0.88 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF415-204 - 603 6.3e-11 42.0 43.8 3 10 0.016 9.4 6.2 2.3 4 37 341 384 338 388 0.82 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF415-204 - 603 6.3e-11 42.0 43.8 4 10 0.0032 1.9 8.4 1.6 9 37 373 412 366 416 0.85 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF415-204 - 603 6.3e-11 42.0 43.8 5 10 0.051 30 4.6 0.2 5 23 426 443 421 448 0.74 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF415-204 - 603 6.3e-11 42.0 43.8 6 10 6.2e-05 0.037 13.9 0.9 2 37 450 496 450 502 0.87 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF415-204 - 603 6.3e-11 42.0 43.8 7 10 0.0023 1.4 8.9 1.9 4 35 481 522 474 530 0.79 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF415-204 - 603 6.3e-11 42.0 43.8 8 10 0.0024 1.5 8.8 2.7 1 36 506 551 506 553 0.83 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF415-204 - 603 6.3e-11 42.0 43.8 9 10 0.00011 0.063 13.2 1.3 1 37 534 580 534 583 0.86 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF415-204 - 603 6.3e-11 42.0 43.8 10 10 0.0024 1.4 8.8 0.2 1 22 562 585 562 594 0.79 Phorbol esters/diacylglycerol binding domain (C1 domain) XPA_N PF01286.18 32 ZNF415-204 - 603 5.9e-07 29.4 35.3 1 11 0.27 1.6e+02 2.4 0.0 3 12 293 302 292 313 0.84 XPA protein N-terminal XPA_N PF01286.18 32 ZNF415-204 - 603 5.9e-07 29.4 35.3 2 11 0.32 1.9e+02 2.2 1.0 3 12 321 330 319 334 0.89 XPA protein N-terminal XPA_N PF01286.18 32 ZNF415-204 - 603 5.9e-07 29.4 35.3 3 11 0.33 1.9e+02 2.2 0.1 3 11 349 357 347 361 0.87 XPA protein N-terminal XPA_N PF01286.18 32 ZNF415-204 - 603 5.9e-07 29.4 35.3 4 11 0.012 7.1 6.8 0.0 3 12 377 386 375 394 0.86 XPA protein N-terminal XPA_N PF01286.18 32 ZNF415-204 - 603 5.9e-07 29.4 35.3 5 11 0.043 26 5.0 0.1 3 13 405 415 403 422 0.84 XPA protein N-terminal XPA_N PF01286.18 32 ZNF415-204 - 603 5.9e-07 29.4 35.3 6 11 0.043 26 5.0 0.0 3 13 433 443 431 451 0.85 XPA protein N-terminal XPA_N PF01286.18 32 ZNF415-204 - 603 5.9e-07 29.4 35.3 7 11 0.09 54 3.9 0.1 3 11 461 469 459 476 0.88 XPA protein N-terminal XPA_N PF01286.18 32 ZNF415-204 - 603 5.9e-07 29.4 35.3 8 11 0.021 12 6.0 0.1 3 12 489 498 487 505 0.90 XPA protein N-terminal XPA_N PF01286.18 32 ZNF415-204 - 603 5.9e-07 29.4 35.3 9 11 0.16 95 3.2 0.0 3 12 517 526 515 533 0.89 XPA protein N-terminal XPA_N PF01286.18 32 ZNF415-204 - 603 5.9e-07 29.4 35.3 10 11 0.032 19 5.4 0.1 3 12 545 554 543 555 0.88 XPA protein N-terminal XPA_N PF01286.18 32 ZNF415-204 - 603 5.9e-07 29.4 35.3 11 11 0.12 73 3.5 0.1 3 12 573 582 571 583 0.88 XPA protein N-terminal # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF415-204.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF415-204.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF415-204.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF415-204.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF415-204.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:05:38 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF415-205.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF415-205.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF415-205.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF415-205.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF415-205.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:05:38 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF415-206.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF415-206.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF415-206.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF415-206.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF415-206.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:05:39 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZNF415-207 - 603 3.6e-90 292.7 75.8 1 13 0.22 1.3e+02 3.2 0.0 12 23 261 272 259 275 0.86 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF415-207 - 603 3.6e-90 292.7 75.8 2 13 1.8e-06 0.0011 19.3 0.1 8 25 284 302 277 303 0.81 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF415-207 - 603 3.6e-90 292.7 75.8 3 13 1.7e-10 1e-07 32.0 0.4 1 25 306 330 306 331 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF415-207 - 603 3.6e-90 292.7 75.8 4 13 1.4e-10 8.3e-08 32.3 0.9 4 25 337 358 335 359 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF415-207 - 603 3.6e-90 292.7 75.8 5 13 1.8e-09 1.1e-06 28.8 0.6 4 25 365 386 363 386 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF415-207 - 603 3.6e-90 292.7 75.8 6 13 3.5e-08 2.1e-05 24.8 0.5 2 25 391 414 390 415 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF415-207 - 603 3.6e-90 292.7 75.8 7 13 9.1e-11 5.5e-08 32.9 0.3 2 25 419 442 418 443 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF415-207 - 603 3.6e-90 292.7 75.8 8 13 2.5e-10 1.5e-07 31.5 0.4 1 25 446 470 446 471 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF415-207 - 603 3.6e-90 292.7 75.8 9 13 6.8e-11 4.1e-08 33.3 1.6 1 25 474 498 474 498 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF415-207 - 603 3.6e-90 292.7 75.8 10 13 3.3e-09 2e-06 28.0 0.3 1 25 502 526 502 526 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF415-207 - 603 3.6e-90 292.7 75.8 11 13 2e-09 1.2e-06 28.7 0.4 2 25 531 554 530 554 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF415-207 - 603 3.6e-90 292.7 75.8 12 13 1.2e-11 7.4e-09 35.6 0.5 1 25 558 582 558 582 0.97 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF415-207 - 603 3.6e-90 292.7 75.8 13 13 0.00047 0.28 11.7 0.5 1 16 586 601 586 601 0.94 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZNF415-207 - 603 1e-67 221.0 85.6 1 12 10 6e+03 -1.9 0.1 5 13 154 162 144 164 0.69 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF415-207 - 603 1e-67 221.0 85.6 2 12 9.3e-10 5.5e-07 29.7 0.4 1 23 292 314 292 314 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF415-207 - 603 1e-67 221.0 85.6 3 12 8.6e-08 5.1e-05 23.5 3.3 1 23 320 342 320 342 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF415-207 - 603 1e-67 221.0 85.6 4 12 2.3e-07 0.00014 22.2 3.5 1 23 348 370 348 370 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF415-207 - 603 1e-67 221.0 85.6 5 12 1.7e-07 0.0001 22.5 0.4 1 23 376 398 376 398 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF415-207 - 603 1e-67 221.0 85.6 6 12 2.7e-09 1.6e-06 28.2 0.6 1 23 404 426 404 426 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF415-207 - 603 1e-67 221.0 85.6 7 12 2.9e-09 1.8e-06 28.1 0.4 1 23 432 454 432 454 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF415-207 - 603 1e-67 221.0 85.6 8 12 4e-09 2.4e-06 27.7 2.4 1 23 460 482 460 482 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF415-207 - 603 1e-67 221.0 85.6 9 12 1.1e-07 6.4e-05 23.2 1.0 1 23 488 510 488 510 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF415-207 - 603 1e-67 221.0 85.6 10 12 1.6e-06 0.00093 19.5 1.4 1 23 516 538 516 538 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF415-207 - 603 1e-67 221.0 85.6 11 12 2e-08 1.2e-05 25.5 0.5 1 23 544 566 544 566 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF415-207 - 603 1e-67 221.0 85.6 12 12 3.2e-08 1.9e-05 24.8 0.7 1 23 572 594 572 594 0.98 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZNF415-207 - 603 2.1e-35 118.3 83.0 1 11 1.6e-07 9.8e-05 22.9 0.6 1 23 292 314 292 315 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF415-207 - 603 2.1e-35 118.3 83.0 2 11 0.00073 0.43 11.5 2.6 1 23 320 342 320 343 0.90 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF415-207 - 603 2.1e-35 118.3 83.0 3 11 0.00029 0.18 12.8 2.4 1 23 348 370 348 371 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF415-207 - 603 2.1e-35 118.3 83.0 4 11 0.00011 0.066 14.1 0.4 1 23 376 398 376 399 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF415-207 - 603 2.1e-35 118.3 83.0 5 11 1.1e-05 0.0068 17.1 0.5 1 23 404 426 404 427 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF415-207 - 603 2.1e-35 118.3 83.0 6 11 1e-06 0.00062 20.4 0.6 1 23 432 454 432 455 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF415-207 - 603 2.1e-35 118.3 83.0 7 11 2.4e-05 0.014 16.2 1.9 1 23 460 482 460 483 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF415-207 - 603 2.1e-35 118.3 83.0 8 11 0.00034 0.2 12.6 0.8 1 23 488 510 488 511 0.91 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF415-207 - 603 2.1e-35 118.3 83.0 9 11 0.00011 0.067 14.1 1.2 1 23 516 538 516 539 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF415-207 - 603 2.1e-35 118.3 83.0 10 11 4e-05 0.024 15.4 0.3 1 23 544 566 544 567 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF415-207 - 603 2.1e-35 118.3 83.0 11 11 3.2e-05 0.019 15.8 0.5 1 23 572 594 572 595 0.92 C2H2-type zinc finger zf-C2H2_11 PF16622.5 29 ZNF415-207 - 603 1.2e-19 69.8 46.4 1 11 0.0016 0.93 9.3 0.1 5 25 292 312 289 314 0.90 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF415-207 - 603 1.2e-19 69.8 46.4 2 11 0.046 28 4.6 0.8 5 25 320 340 317 342 0.87 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF415-207 - 603 1.2e-19 69.8 46.4 3 11 2.4 1.4e+03 -0.9 0.7 5 15 348 358 346 367 0.76 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF415-207 - 603 1.2e-19 69.8 46.4 4 11 0.023 14 5.6 0.1 7 26 378 397 375 398 0.88 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF415-207 - 603 1.2e-19 69.8 46.4 5 11 0.001 0.63 9.9 0.2 5 26 404 425 402 426 0.94 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF415-207 - 603 1.2e-19 69.8 46.4 6 11 1.2e-05 0.007 16.1 0.1 5 26 432 453 429 454 0.94 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF415-207 - 603 1.2e-19 69.8 46.4 7 11 0.013 7.8 6.3 0.2 5 25 460 480 457 482 0.88 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF415-207 - 603 1.2e-19 69.8 46.4 8 11 0.0045 2.7 7.8 0.1 5 26 488 509 485 510 0.88 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF415-207 - 603 1.2e-19 69.8 46.4 9 11 0.00044 0.27 11.1 0.3 5 26 516 537 513 538 0.91 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF415-207 - 603 1.2e-19 69.8 46.4 10 11 3.2e-05 0.019 14.7 0.0 5 26 544 565 541 566 0.90 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF415-207 - 603 1.2e-19 69.8 46.4 11 11 0.00023 0.14 12.0 0.2 5 26 572 593 570 596 0.90 zinc-finger C2H2-type zf-C2H2_6 PF13912.6 27 ZNF415-207 - 603 1.3e-17 63.3 75.3 1 11 0.00077 0.46 10.5 0.1 2 12 292 302 292 311 0.92 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF415-207 - 603 1.3e-17 63.3 75.3 2 11 0.0029 1.7 8.7 0.9 2 12 320 330 320 340 0.95 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF415-207 - 603 1.3e-17 63.3 75.3 3 11 0.031 19 5.4 2.4 2 13 348 359 348 370 0.88 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF415-207 - 603 1.3e-17 63.3 75.3 4 11 0.0078 4.7 7.3 0.9 2 12 376 386 376 386 0.92 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF415-207 - 603 1.3e-17 63.3 75.3 5 11 6.3e-05 0.038 14.0 0.7 2 24 404 426 404 429 0.88 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF415-207 - 603 1.3e-17 63.3 75.3 6 11 0.00032 0.19 11.8 0.1 2 12 432 442 432 453 0.88 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF415-207 - 603 1.3e-17 63.3 75.3 7 11 0.00038 0.23 11.5 4.2 2 22 460 480 460 483 0.74 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF415-207 - 603 1.3e-17 63.3 75.3 8 11 0.00085 0.51 10.4 1.1 2 20 488 506 488 510 0.89 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF415-207 - 603 1.3e-17 63.3 75.3 9 11 0.0036 2.2 8.4 1.7 2 20 516 534 516 538 0.89 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF415-207 - 603 1.3e-17 63.3 75.3 10 11 0.00037 0.22 11.5 0.3 2 12 544 554 544 563 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF415-207 - 603 1.3e-17 63.3 75.3 11 11 0.0063 3.8 7.6 0.3 2 12 572 582 572 594 0.92 C2H2-type zinc finger Zn-ribbon_8 PF09723.10 40 ZNF415-207 - 603 1.3e-15 57.3 53.4 1 10 0.0046 2.7 8.2 3.7 6 35 292 328 291 331 0.78 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF415-207 - 603 1.3e-15 57.3 53.4 2 10 0.34 2e+02 2.2 6.8 6 32 320 353 319 353 0.79 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF415-207 - 603 1.3e-15 57.3 53.4 3 10 0.0006 0.36 11.0 4.5 6 34 348 383 347 390 0.85 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF415-207 - 603 1.3e-15 57.3 53.4 4 10 2.3e-05 0.014 15.5 4.0 6 34 404 439 403 443 0.91 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF415-207 - 603 1.3e-15 57.3 53.4 5 10 0.0017 0.99 9.6 0.3 6 19 432 445 431 452 0.84 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF415-207 - 603 1.3e-15 57.3 53.4 6 10 0.00011 0.063 13.4 4.2 6 34 460 495 459 500 0.85 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF415-207 - 603 1.3e-15 57.3 53.4 7 10 0.003 1.8 8.7 0.3 6 19 488 501 487 510 0.85 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF415-207 - 603 1.3e-15 57.3 53.4 8 10 0.0021 1.3 9.2 0.0 6 20 516 530 515 540 0.85 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF415-207 - 603 1.3e-15 57.3 53.4 9 10 9e-05 0.054 13.6 3.2 6 34 544 579 543 584 0.85 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF415-207 - 603 1.3e-15 57.3 53.4 10 10 0.0034 2 8.6 0.2 6 18 572 584 571 594 0.88 Zinc ribbon domain zf_UBZ PF18439.1 32 ZNF415-207 - 603 1.9e-13 49.7 45.2 1 11 0.045 27 4.5 0.0 2 14 291 303 290 310 0.83 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF415-207 - 603 1.9e-13 49.7 45.2 2 11 0.32 1.9e+02 1.7 1.3 3 13 320 330 318 334 0.86 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF415-207 - 603 1.9e-13 49.7 45.2 3 11 0.29 1.7e+02 1.9 0.9 3 14 348 359 346 363 0.86 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF415-207 - 603 1.9e-13 49.7 45.2 4 11 0.0017 0.99 9.1 0.1 3 20 376 394 374 395 0.81 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF415-207 - 603 1.9e-13 49.7 45.2 5 11 0.00083 0.49 10.0 0.1 3 21 404 423 402 423 0.92 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF415-207 - 603 1.9e-13 49.7 45.2 6 11 0.0055 3.3 7.4 0.1 3 16 432 446 430 450 0.81 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF415-207 - 603 1.9e-13 49.7 45.2 7 11 0.012 7.1 6.3 0.1 3 20 460 478 458 479 0.79 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF415-207 - 603 1.9e-13 49.7 45.2 8 11 0.00096 0.57 9.8 0.2 3 21 488 507 486 507 0.92 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF415-207 - 603 1.9e-13 49.7 45.2 9 11 0.0017 0.99 9.1 0.1 3 21 516 535 514 535 0.92 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF415-207 - 603 1.9e-13 49.7 45.2 10 11 0.0047 2.8 7.6 0.1 3 20 544 562 542 563 0.80 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF415-207 - 603 1.9e-13 49.7 45.2 11 11 0.0033 2 8.1 0.1 3 14 572 583 570 590 0.90 Ubiquitin-Binding Zinc Finger C1_1 PF00130.22 53 ZNF415-207 - 603 6.3e-11 42.0 43.8 1 10 0.068 41 4.2 0.2 22 38 285 301 267 307 0.64 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF415-207 - 603 6.3e-11 42.0 43.8 2 10 0.00032 0.19 11.6 3.2 2 47 310 367 310 373 0.88 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF415-207 - 603 6.3e-11 42.0 43.8 3 10 0.016 9.4 6.2 2.3 4 37 341 384 338 388 0.82 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF415-207 - 603 6.3e-11 42.0 43.8 4 10 0.0032 1.9 8.4 1.6 9 37 373 412 366 416 0.85 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF415-207 - 603 6.3e-11 42.0 43.8 5 10 0.051 30 4.6 0.2 5 23 426 443 421 448 0.74 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF415-207 - 603 6.3e-11 42.0 43.8 6 10 6.2e-05 0.037 13.9 0.9 2 37 450 496 450 502 0.87 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF415-207 - 603 6.3e-11 42.0 43.8 7 10 0.0023 1.4 8.9 1.9 4 35 481 522 474 530 0.79 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF415-207 - 603 6.3e-11 42.0 43.8 8 10 0.0024 1.5 8.8 2.7 1 36 506 551 506 553 0.83 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF415-207 - 603 6.3e-11 42.0 43.8 9 10 0.00011 0.063 13.2 1.3 1 37 534 580 534 583 0.86 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF415-207 - 603 6.3e-11 42.0 43.8 10 10 0.0024 1.4 8.8 0.2 1 22 562 585 562 594 0.79 Phorbol esters/diacylglycerol binding domain (C1 domain) XPA_N PF01286.18 32 ZNF415-207 - 603 5.9e-07 29.4 35.3 1 11 0.27 1.6e+02 2.4 0.0 3 12 293 302 292 313 0.84 XPA protein N-terminal XPA_N PF01286.18 32 ZNF415-207 - 603 5.9e-07 29.4 35.3 2 11 0.32 1.9e+02 2.2 1.0 3 12 321 330 319 334 0.89 XPA protein N-terminal XPA_N PF01286.18 32 ZNF415-207 - 603 5.9e-07 29.4 35.3 3 11 0.33 1.9e+02 2.2 0.1 3 11 349 357 347 361 0.87 XPA protein N-terminal XPA_N PF01286.18 32 ZNF415-207 - 603 5.9e-07 29.4 35.3 4 11 0.012 7.1 6.8 0.0 3 12 377 386 375 394 0.86 XPA protein N-terminal XPA_N PF01286.18 32 ZNF415-207 - 603 5.9e-07 29.4 35.3 5 11 0.043 26 5.0 0.1 3 13 405 415 403 422 0.84 XPA protein N-terminal XPA_N PF01286.18 32 ZNF415-207 - 603 5.9e-07 29.4 35.3 6 11 0.043 26 5.0 0.0 3 13 433 443 431 451 0.85 XPA protein N-terminal XPA_N PF01286.18 32 ZNF415-207 - 603 5.9e-07 29.4 35.3 7 11 0.09 54 3.9 0.1 3 11 461 469 459 476 0.88 XPA protein N-terminal XPA_N PF01286.18 32 ZNF415-207 - 603 5.9e-07 29.4 35.3 8 11 0.021 12 6.0 0.1 3 12 489 498 487 505 0.90 XPA protein N-terminal XPA_N PF01286.18 32 ZNF415-207 - 603 5.9e-07 29.4 35.3 9 11 0.16 95 3.2 0.0 3 12 517 526 515 533 0.89 XPA protein N-terminal XPA_N PF01286.18 32 ZNF415-207 - 603 5.9e-07 29.4 35.3 10 11 0.032 19 5.4 0.1 3 12 545 554 543 555 0.88 XPA protein N-terminal XPA_N PF01286.18 32 ZNF415-207 - 603 5.9e-07 29.4 35.3 11 11 0.12 73 3.5 0.1 3 12 573 582 571 583 0.88 XPA protein N-terminal # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF415-207.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF415-207.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF415-207.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF415-207.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF415-207.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:05:39 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF415-208.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF415-208.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF415-208.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF415-208.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF415-208.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:05:39 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- KRAB PF01352.27 42 ZNF415-209 - 73 2.1e-26 91.3 0.1 1 1 1.4e-30 2.5e-26 91.0 0.1 2 42 6 46 5 46 0.98 KRAB box # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF415-209.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF415-209.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF415-209.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF415-209.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF415-209.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:05:40 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF415-210.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF415-210.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF415-210.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF415-210.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF415-210.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:05:40 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF415-211.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF415-211.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF415-211.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF415-211.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF415-211.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:05:40 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF415-212.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF415-212.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF415-212.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF415-212.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF415-212.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:05:41 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZNF415-213 - 567 1.5e-90 293.9 75.8 1 13 0.22 1.2e+02 3.3 0.0 12 23 225 236 223 239 0.86 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF415-213 - 567 1.5e-90 293.9 75.8 2 13 1.8e-06 0.001 19.4 0.1 8 25 248 266 241 267 0.81 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF415-213 - 567 1.5e-90 293.9 75.8 3 13 1.7e-10 9.5e-08 32.1 0.4 1 25 270 294 270 295 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF415-213 - 567 1.5e-90 293.9 75.8 4 13 1.4e-10 7.7e-08 32.4 0.9 4 25 301 322 299 323 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF415-213 - 567 1.5e-90 293.9 75.8 5 13 1.8e-09 9.8e-07 28.9 0.6 4 25 329 350 327 350 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF415-213 - 567 1.5e-90 293.9 75.8 6 13 3.4e-08 1.9e-05 24.9 0.5 2 25 355 378 354 379 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF415-213 - 567 1.5e-90 293.9 75.8 7 13 9.1e-11 5.1e-08 33.0 0.3 2 25 383 406 382 407 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF415-213 - 567 1.5e-90 293.9 75.8 8 13 2.5e-10 1.4e-07 31.6 0.4 1 25 410 434 410 435 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF415-213 - 567 1.5e-90 293.9 75.8 9 13 6.7e-11 3.8e-08 33.4 1.6 1 25 438 462 438 462 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF415-213 - 567 1.5e-90 293.9 75.8 10 13 3.3e-09 1.9e-06 28.1 0.3 1 25 466 490 466 490 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF415-213 - 567 1.5e-90 293.9 75.8 11 13 2e-09 1.1e-06 28.8 0.4 2 25 495 518 494 518 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF415-213 - 567 1.5e-90 293.9 75.8 12 13 1.2e-11 6.9e-09 35.7 0.5 1 25 522 546 522 546 0.97 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF415-213 - 567 1.5e-90 293.9 75.8 13 13 0.00047 0.26 11.8 0.5 1 16 550 565 550 565 0.94 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZNF415-213 - 567 1.9e-67 220.2 87.5 1 12 9.9 5.6e+03 -1.8 0.1 5 13 118 126 108 128 0.69 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF415-213 - 567 1.9e-67 220.2 87.5 2 12 9.2e-10 5.1e-07 29.8 0.4 1 23 256 278 256 278 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF415-213 - 567 1.9e-67 220.2 87.5 3 12 8.5e-08 4.8e-05 23.6 3.3 1 23 284 306 284 306 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF415-213 - 567 1.9e-67 220.2 87.5 4 12 2.3e-07 0.00013 22.2 3.5 1 23 312 334 312 334 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF415-213 - 567 1.9e-67 220.2 87.5 5 12 1.7e-07 9.5e-05 22.6 0.4 1 23 340 362 340 362 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF415-213 - 567 1.9e-67 220.2 87.5 6 12 2.7e-09 1.5e-06 28.3 0.6 1 23 368 390 368 390 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF415-213 - 567 1.9e-67 220.2 87.5 7 12 2.9e-09 1.6e-06 28.2 0.4 1 23 396 418 396 418 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF415-213 - 567 1.9e-67 220.2 87.5 8 12 4e-09 2.2e-06 27.8 2.4 1 23 424 446 424 446 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF415-213 - 567 1.9e-67 220.2 87.5 9 12 1.1e-07 6e-05 23.3 1.0 1 23 452 474 452 474 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF415-213 - 567 1.9e-67 220.2 87.5 10 12 1.6e-06 0.00087 19.6 1.4 1 23 480 502 480 502 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF415-213 - 567 1.9e-67 220.2 87.5 11 12 2e-08 1.1e-05 25.6 0.5 1 23 508 530 508 530 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF415-213 - 567 1.9e-67 220.2 87.5 12 12 3.2e-08 1.8e-05 24.9 0.7 1 23 536 558 536 558 0.98 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZNF415-213 - 567 3.4e-37 123.9 78.2 1 11 1.6e-07 9.1e-05 23.0 0.6 1 23 256 278 256 279 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF415-213 - 567 3.4e-37 123.9 78.2 2 11 0.00072 0.4 11.6 2.6 1 23 284 306 284 307 0.90 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF415-213 - 567 3.4e-37 123.9 78.2 3 11 0.00029 0.16 12.9 2.4 1 23 312 334 312 335 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF415-213 - 567 3.4e-37 123.9 78.2 4 11 0.00011 0.061 14.2 0.4 1 23 340 362 340 363 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF415-213 - 567 3.4e-37 123.9 78.2 5 11 1.1e-05 0.0064 17.2 0.5 1 23 368 390 368 391 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF415-213 - 567 3.4e-37 123.9 78.2 6 11 1e-06 0.00057 20.5 0.6 1 23 396 418 396 419 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF415-213 - 567 3.4e-37 123.9 78.2 7 11 2.4e-05 0.013 16.3 1.9 1 23 424 446 424 447 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF415-213 - 567 3.4e-37 123.9 78.2 8 11 0.00034 0.19 12.7 0.8 1 23 452 474 452 475 0.91 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF415-213 - 567 3.4e-37 123.9 78.2 9 11 0.00011 0.062 14.2 1.2 1 23 480 502 480 503 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF415-213 - 567 3.4e-37 123.9 78.2 10 11 4e-05 0.022 15.5 0.3 1 23 508 530 508 531 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF415-213 - 567 3.4e-37 123.9 78.2 11 11 3.1e-05 0.018 15.9 0.5 1 23 536 558 536 559 0.92 C2H2-type zinc finger zf-C2H2_11 PF16622.5 29 ZNF415-213 - 567 5.5e-20 70.8 46.4 1 11 0.0015 0.87 9.4 0.1 5 25 256 276 253 278 0.90 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF415-213 - 567 5.5e-20 70.8 46.4 2 11 0.046 26 4.7 0.8 5 25 284 304 281 306 0.87 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF415-213 - 567 5.5e-20 70.8 46.4 3 11 2.4 1.3e+03 -0.8 0.7 5 16 312 323 310 331 0.76 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF415-213 - 567 5.5e-20 70.8 46.4 4 11 0.023 13 5.7 0.1 7 26 342 361 339 362 0.88 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF415-213 - 567 5.5e-20 70.8 46.4 5 11 0.001 0.58 10.0 0.2 5 26 368 389 366 390 0.94 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF415-213 - 567 5.5e-20 70.8 46.4 6 11 1.2e-05 0.0065 16.2 0.1 5 26 396 417 393 418 0.94 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF415-213 - 567 5.5e-20 70.8 46.4 7 11 0.013 7.3 6.4 0.2 5 25 424 444 421 446 0.88 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF415-213 - 567 5.5e-20 70.8 46.4 8 11 0.0044 2.5 7.9 0.1 5 26 452 473 449 474 0.88 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF415-213 - 567 5.5e-20 70.8 46.4 9 11 0.00044 0.25 11.2 0.3 5 26 480 501 477 502 0.91 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF415-213 - 567 5.5e-20 70.8 46.4 10 11 3.2e-05 0.018 14.8 0.0 5 26 508 529 505 530 0.90 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF415-213 - 567 5.5e-20 70.8 46.4 11 11 0.00023 0.13 12.1 0.2 5 26 536 557 534 560 0.90 zinc-finger C2H2-type zf-C2H2_6 PF13912.6 27 ZNF415-213 - 567 5.8e-18 64.4 75.2 1 11 0.00077 0.43 10.6 0.1 2 12 256 266 256 275 0.92 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF415-213 - 567 5.8e-18 64.4 75.2 2 11 0.0029 1.6 8.8 0.9 2 12 284 294 284 304 0.95 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF415-213 - 567 5.8e-18 64.4 75.2 3 11 0.031 17 5.5 2.4 2 13 312 323 312 334 0.88 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF415-213 - 567 5.8e-18 64.4 75.2 4 11 0.0078 4.4 7.4 0.9 2 12 340 350 340 350 0.92 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF415-213 - 567 5.8e-18 64.4 75.2 5 11 6.3e-05 0.035 14.1 0.7 2 24 368 390 368 393 0.88 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF415-213 - 567 5.8e-18 64.4 75.2 6 11 0.00032 0.18 11.9 0.1 2 12 396 406 396 417 0.88 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF415-213 - 567 5.8e-18 64.4 75.2 7 11 0.00039 0.22 11.6 4.3 2 22 424 444 424 447 0.74 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF415-213 - 567 5.8e-18 64.4 75.2 8 11 0.00085 0.48 10.5 1.1 2 20 452 470 452 474 0.89 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF415-213 - 567 5.8e-18 64.4 75.2 9 11 0.0036 2 8.5 1.7 2 20 480 498 480 502 0.89 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF415-213 - 567 5.8e-18 64.4 75.2 10 11 0.00037 0.21 11.6 0.3 2 12 508 518 508 527 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF415-213 - 567 5.8e-18 64.4 75.2 11 11 0.0061 3.4 7.8 0.2 2 12 536 546 536 559 0.92 C2H2-type zinc finger Zn-ribbon_8 PF09723.10 40 ZNF415-213 - 567 8e-16 57.9 53.7 1 10 0.005 2.8 8.1 3.8 6 35 256 292 255 295 0.78 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF415-213 - 567 8e-16 57.9 53.7 2 10 0.048 27 5.0 1.1 6 16 284 294 283 310 0.87 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF415-213 - 567 8e-16 57.9 53.7 3 10 0.00056 0.32 11.2 4.4 6 34 312 347 311 354 0.85 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF415-213 - 567 8e-16 57.9 53.7 4 10 2.5e-05 0.014 15.5 4.1 6 34 368 403 367 407 0.91 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF415-213 - 567 8e-16 57.9 53.7 5 10 0.0017 0.93 9.7 0.3 6 19 396 409 395 416 0.84 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF415-213 - 567 8e-16 57.9 53.7 6 10 0.00012 0.068 13.3 4.4 6 34 424 459 423 464 0.85 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF415-213 - 567 8e-16 57.9 53.7 7 10 0.003 1.7 8.9 0.3 6 19 452 465 450 474 0.86 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF415-213 - 567 8e-16 57.9 53.7 8 10 0.0021 1.2 9.3 0.0 6 20 480 494 479 504 0.85 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF415-213 - 567 8e-16 57.9 53.7 9 10 8.6e-05 0.048 13.8 3.2 6 34 508 543 507 548 0.85 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF415-213 - 567 8e-16 57.9 53.7 10 10 0.0034 1.9 8.7 0.2 6 18 536 548 535 558 0.88 Zinc ribbon domain zf_UBZ PF18439.1 32 ZNF415-213 - 567 9.4e-14 50.7 45.2 1 11 0.045 25 4.6 0.0 2 14 255 267 254 274 0.83 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF415-213 - 567 9.4e-14 50.7 45.2 2 11 0.32 1.8e+02 1.8 1.3 3 13 284 294 282 298 0.86 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF415-213 - 567 9.4e-14 50.7 45.2 3 11 0.29 1.6e+02 2.0 0.9 3 14 312 323 310 327 0.86 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF415-213 - 567 9.4e-14 50.7 45.2 4 11 0.0016 0.92 9.2 0.1 3 20 340 358 338 359 0.81 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF415-213 - 567 9.4e-14 50.7 45.2 5 11 0.00082 0.46 10.1 0.1 3 21 368 387 366 387 0.92 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF415-213 - 567 9.4e-14 50.7 45.2 6 11 0.0054 3.1 7.5 0.1 3 16 396 410 394 414 0.81 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF415-213 - 567 9.4e-14 50.7 45.2 7 11 0.012 6.7 6.4 0.1 3 20 424 442 422 443 0.79 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF415-213 - 567 9.4e-14 50.7 45.2 8 11 0.00096 0.54 9.9 0.2 3 21 452 471 450 471 0.92 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF415-213 - 567 9.4e-14 50.7 45.2 9 11 0.0016 0.92 9.2 0.1 3 21 480 499 478 499 0.92 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF415-213 - 567 9.4e-14 50.7 45.2 10 11 0.0047 2.6 7.7 0.1 3 20 508 526 506 527 0.80 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF415-213 - 567 9.4e-14 50.7 45.2 11 11 0.0033 1.8 8.2 0.1 3 14 536 547 534 554 0.90 Ubiquitin-Binding Zinc Finger C1_1 PF00130.22 53 ZNF415-213 - 567 5e-11 42.3 44.3 1 10 0.068 38 4.3 0.2 22 38 249 265 231 271 0.64 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF415-213 - 567 5e-11 42.3 44.3 2 10 0.00036 0.2 11.5 3.4 2 47 274 331 274 337 0.88 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF415-213 - 567 5e-11 42.3 44.3 3 10 0.019 11 6.0 2.6 4 37 305 348 302 352 0.82 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF415-213 - 567 5e-11 42.3 44.3 4 10 0.0035 1.9 8.4 1.7 9 37 337 376 330 380 0.85 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF415-213 - 567 5e-11 42.3 44.3 5 10 0.0016 0.9 9.5 1.9 4 37 361 404 358 408 0.82 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF415-213 - 567 5e-11 42.3 44.3 6 10 6.5e-05 0.036 13.9 1.0 2 37 414 460 414 466 0.87 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF415-213 - 567 5e-11 42.3 44.3 7 10 0.0024 1.3 8.9 1.9 4 35 445 486 438 494 0.79 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF415-213 - 567 5e-11 42.3 44.3 8 10 0.0014 0.79 9.7 2.2 1 37 470 516 470 520 0.83 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF415-213 - 567 5e-11 42.3 44.3 9 10 8.8e-05 0.049 13.5 1.3 1 37 498 544 498 548 0.86 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF415-213 - 567 5e-11 42.3 44.3 10 10 0.0024 1.3 8.9 0.2 1 22 526 549 526 558 0.79 Phorbol esters/diacylglycerol binding domain (C1 domain) XPA_N PF01286.18 32 ZNF415-213 - 567 2.8e-07 30.4 35.3 1 11 0.27 1.5e+02 2.5 0.0 3 12 257 266 256 277 0.84 XPA protein N-terminal XPA_N PF01286.18 32 ZNF415-213 - 567 2.8e-07 30.4 35.3 2 11 0.32 1.8e+02 2.3 1.0 3 12 285 294 283 298 0.89 XPA protein N-terminal XPA_N PF01286.18 32 ZNF415-213 - 567 2.8e-07 30.4 35.3 3 11 0.32 1.8e+02 2.3 0.1 3 11 313 321 311 325 0.87 XPA protein N-terminal XPA_N PF01286.18 32 ZNF415-213 - 567 2.8e-07 30.4 35.3 4 11 0.012 6.6 6.9 0.0 3 12 341 350 339 358 0.86 XPA protein N-terminal XPA_N PF01286.18 32 ZNF415-213 - 567 2.8e-07 30.4 35.3 5 11 0.043 24 5.1 0.1 3 13 369 379 367 386 0.84 XPA protein N-terminal XPA_N PF01286.18 32 ZNF415-213 - 567 2.8e-07 30.4 35.3 6 11 0.043 24 5.1 0.0 3 13 397 407 395 415 0.85 XPA protein N-terminal XPA_N PF01286.18 32 ZNF415-213 - 567 2.8e-07 30.4 35.3 7 11 0.09 50 4.0 0.1 3 11 425 433 423 440 0.88 XPA protein N-terminal XPA_N PF01286.18 32 ZNF415-213 - 567 2.8e-07 30.4 35.3 8 11 0.02 11 6.1 0.1 3 12 453 462 451 469 0.90 XPA protein N-terminal XPA_N PF01286.18 32 ZNF415-213 - 567 2.8e-07 30.4 35.3 9 11 0.16 89 3.3 0.0 3 12 481 490 479 497 0.89 XPA protein N-terminal XPA_N PF01286.18 32 ZNF415-213 - 567 2.8e-07 30.4 35.3 10 11 0.032 18 5.5 0.1 3 12 509 518 507 519 0.88 XPA protein N-terminal XPA_N PF01286.18 32 ZNF415-213 - 567 2.8e-07 30.4 35.3 11 11 0.12 68 3.6 0.1 3 12 537 546 535 547 0.88 XPA protein N-terminal # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF415-213.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF415-213.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF415-213.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF415-213.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF415-213.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:05:41 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZNF415-214 - 567 1.5e-90 293.9 75.8 1 13 0.22 1.2e+02 3.3 0.0 12 23 225 236 223 239 0.86 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF415-214 - 567 1.5e-90 293.9 75.8 2 13 1.8e-06 0.001 19.4 0.1 8 25 248 266 241 267 0.81 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF415-214 - 567 1.5e-90 293.9 75.8 3 13 1.7e-10 9.5e-08 32.1 0.4 1 25 270 294 270 295 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF415-214 - 567 1.5e-90 293.9 75.8 4 13 1.4e-10 7.7e-08 32.4 0.9 4 25 301 322 299 323 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF415-214 - 567 1.5e-90 293.9 75.8 5 13 1.8e-09 9.8e-07 28.9 0.6 4 25 329 350 327 350 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF415-214 - 567 1.5e-90 293.9 75.8 6 13 3.4e-08 1.9e-05 24.9 0.5 2 25 355 378 354 379 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF415-214 - 567 1.5e-90 293.9 75.8 7 13 9.1e-11 5.1e-08 33.0 0.3 2 25 383 406 382 407 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF415-214 - 567 1.5e-90 293.9 75.8 8 13 2.5e-10 1.4e-07 31.6 0.4 1 25 410 434 410 435 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF415-214 - 567 1.5e-90 293.9 75.8 9 13 6.7e-11 3.8e-08 33.4 1.6 1 25 438 462 438 462 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF415-214 - 567 1.5e-90 293.9 75.8 10 13 3.3e-09 1.9e-06 28.1 0.3 1 25 466 490 466 490 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF415-214 - 567 1.5e-90 293.9 75.8 11 13 2e-09 1.1e-06 28.8 0.4 2 25 495 518 494 518 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF415-214 - 567 1.5e-90 293.9 75.8 12 13 1.2e-11 6.9e-09 35.7 0.5 1 25 522 546 522 546 0.97 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF415-214 - 567 1.5e-90 293.9 75.8 13 13 0.00047 0.26 11.8 0.5 1 16 550 565 550 565 0.94 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZNF415-214 - 567 1.9e-67 220.2 87.5 1 12 9.9 5.6e+03 -1.8 0.1 5 13 118 126 108 128 0.69 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF415-214 - 567 1.9e-67 220.2 87.5 2 12 9.2e-10 5.1e-07 29.8 0.4 1 23 256 278 256 278 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF415-214 - 567 1.9e-67 220.2 87.5 3 12 8.5e-08 4.8e-05 23.6 3.3 1 23 284 306 284 306 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF415-214 - 567 1.9e-67 220.2 87.5 4 12 2.3e-07 0.00013 22.2 3.5 1 23 312 334 312 334 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF415-214 - 567 1.9e-67 220.2 87.5 5 12 1.7e-07 9.5e-05 22.6 0.4 1 23 340 362 340 362 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF415-214 - 567 1.9e-67 220.2 87.5 6 12 2.7e-09 1.5e-06 28.3 0.6 1 23 368 390 368 390 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF415-214 - 567 1.9e-67 220.2 87.5 7 12 2.9e-09 1.6e-06 28.2 0.4 1 23 396 418 396 418 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF415-214 - 567 1.9e-67 220.2 87.5 8 12 4e-09 2.2e-06 27.8 2.4 1 23 424 446 424 446 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF415-214 - 567 1.9e-67 220.2 87.5 9 12 1.1e-07 6e-05 23.3 1.0 1 23 452 474 452 474 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF415-214 - 567 1.9e-67 220.2 87.5 10 12 1.6e-06 0.00087 19.6 1.4 1 23 480 502 480 502 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF415-214 - 567 1.9e-67 220.2 87.5 11 12 2e-08 1.1e-05 25.6 0.5 1 23 508 530 508 530 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF415-214 - 567 1.9e-67 220.2 87.5 12 12 3.2e-08 1.8e-05 24.9 0.7 1 23 536 558 536 558 0.98 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZNF415-214 - 567 3.4e-37 123.9 78.2 1 11 1.6e-07 9.1e-05 23.0 0.6 1 23 256 278 256 279 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF415-214 - 567 3.4e-37 123.9 78.2 2 11 0.00072 0.4 11.6 2.6 1 23 284 306 284 307 0.90 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF415-214 - 567 3.4e-37 123.9 78.2 3 11 0.00029 0.16 12.9 2.4 1 23 312 334 312 335 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF415-214 - 567 3.4e-37 123.9 78.2 4 11 0.00011 0.061 14.2 0.4 1 23 340 362 340 363 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF415-214 - 567 3.4e-37 123.9 78.2 5 11 1.1e-05 0.0064 17.2 0.5 1 23 368 390 368 391 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF415-214 - 567 3.4e-37 123.9 78.2 6 11 1e-06 0.00057 20.5 0.6 1 23 396 418 396 419 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF415-214 - 567 3.4e-37 123.9 78.2 7 11 2.4e-05 0.013 16.3 1.9 1 23 424 446 424 447 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF415-214 - 567 3.4e-37 123.9 78.2 8 11 0.00034 0.19 12.7 0.8 1 23 452 474 452 475 0.91 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF415-214 - 567 3.4e-37 123.9 78.2 9 11 0.00011 0.062 14.2 1.2 1 23 480 502 480 503 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF415-214 - 567 3.4e-37 123.9 78.2 10 11 4e-05 0.022 15.5 0.3 1 23 508 530 508 531 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF415-214 - 567 3.4e-37 123.9 78.2 11 11 3.1e-05 0.018 15.9 0.5 1 23 536 558 536 559 0.92 C2H2-type zinc finger zf-C2H2_11 PF16622.5 29 ZNF415-214 - 567 5.5e-20 70.8 46.4 1 11 0.0015 0.87 9.4 0.1 5 25 256 276 253 278 0.90 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF415-214 - 567 5.5e-20 70.8 46.4 2 11 0.046 26 4.7 0.8 5 25 284 304 281 306 0.87 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF415-214 - 567 5.5e-20 70.8 46.4 3 11 2.4 1.3e+03 -0.8 0.7 5 16 312 323 310 331 0.76 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF415-214 - 567 5.5e-20 70.8 46.4 4 11 0.023 13 5.7 0.1 7 26 342 361 339 362 0.88 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF415-214 - 567 5.5e-20 70.8 46.4 5 11 0.001 0.58 10.0 0.2 5 26 368 389 366 390 0.94 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF415-214 - 567 5.5e-20 70.8 46.4 6 11 1.2e-05 0.0065 16.2 0.1 5 26 396 417 393 418 0.94 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF415-214 - 567 5.5e-20 70.8 46.4 7 11 0.013 7.3 6.4 0.2 5 25 424 444 421 446 0.88 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF415-214 - 567 5.5e-20 70.8 46.4 8 11 0.0044 2.5 7.9 0.1 5 26 452 473 449 474 0.88 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF415-214 - 567 5.5e-20 70.8 46.4 9 11 0.00044 0.25 11.2 0.3 5 26 480 501 477 502 0.91 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF415-214 - 567 5.5e-20 70.8 46.4 10 11 3.2e-05 0.018 14.8 0.0 5 26 508 529 505 530 0.90 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF415-214 - 567 5.5e-20 70.8 46.4 11 11 0.00023 0.13 12.1 0.2 5 26 536 557 534 560 0.90 zinc-finger C2H2-type zf-C2H2_6 PF13912.6 27 ZNF415-214 - 567 5.8e-18 64.4 75.2 1 11 0.00077 0.43 10.6 0.1 2 12 256 266 256 275 0.92 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF415-214 - 567 5.8e-18 64.4 75.2 2 11 0.0029 1.6 8.8 0.9 2 12 284 294 284 304 0.95 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF415-214 - 567 5.8e-18 64.4 75.2 3 11 0.031 17 5.5 2.4 2 13 312 323 312 334 0.88 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF415-214 - 567 5.8e-18 64.4 75.2 4 11 0.0078 4.4 7.4 0.9 2 12 340 350 340 350 0.92 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF415-214 - 567 5.8e-18 64.4 75.2 5 11 6.3e-05 0.035 14.1 0.7 2 24 368 390 368 393 0.88 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF415-214 - 567 5.8e-18 64.4 75.2 6 11 0.00032 0.18 11.9 0.1 2 12 396 406 396 417 0.88 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF415-214 - 567 5.8e-18 64.4 75.2 7 11 0.00039 0.22 11.6 4.3 2 22 424 444 424 447 0.74 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF415-214 - 567 5.8e-18 64.4 75.2 8 11 0.00085 0.48 10.5 1.1 2 20 452 470 452 474 0.89 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF415-214 - 567 5.8e-18 64.4 75.2 9 11 0.0036 2 8.5 1.7 2 20 480 498 480 502 0.89 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF415-214 - 567 5.8e-18 64.4 75.2 10 11 0.00037 0.21 11.6 0.3 2 12 508 518 508 527 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF415-214 - 567 5.8e-18 64.4 75.2 11 11 0.0061 3.4 7.8 0.2 2 12 536 546 536 559 0.92 C2H2-type zinc finger Zn-ribbon_8 PF09723.10 40 ZNF415-214 - 567 8e-16 57.9 53.7 1 10 0.005 2.8 8.1 3.8 6 35 256 292 255 295 0.78 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF415-214 - 567 8e-16 57.9 53.7 2 10 0.048 27 5.0 1.1 6 16 284 294 283 310 0.87 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF415-214 - 567 8e-16 57.9 53.7 3 10 0.00056 0.32 11.2 4.4 6 34 312 347 311 354 0.85 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF415-214 - 567 8e-16 57.9 53.7 4 10 2.5e-05 0.014 15.5 4.1 6 34 368 403 367 407 0.91 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF415-214 - 567 8e-16 57.9 53.7 5 10 0.0017 0.93 9.7 0.3 6 19 396 409 395 416 0.84 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF415-214 - 567 8e-16 57.9 53.7 6 10 0.00012 0.068 13.3 4.4 6 34 424 459 423 464 0.85 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF415-214 - 567 8e-16 57.9 53.7 7 10 0.003 1.7 8.9 0.3 6 19 452 465 450 474 0.86 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF415-214 - 567 8e-16 57.9 53.7 8 10 0.0021 1.2 9.3 0.0 6 20 480 494 479 504 0.85 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF415-214 - 567 8e-16 57.9 53.7 9 10 8.6e-05 0.048 13.8 3.2 6 34 508 543 507 548 0.85 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF415-214 - 567 8e-16 57.9 53.7 10 10 0.0034 1.9 8.7 0.2 6 18 536 548 535 558 0.88 Zinc ribbon domain zf_UBZ PF18439.1 32 ZNF415-214 - 567 9.4e-14 50.7 45.2 1 11 0.045 25 4.6 0.0 2 14 255 267 254 274 0.83 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF415-214 - 567 9.4e-14 50.7 45.2 2 11 0.32 1.8e+02 1.8 1.3 3 13 284 294 282 298 0.86 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF415-214 - 567 9.4e-14 50.7 45.2 3 11 0.29 1.6e+02 2.0 0.9 3 14 312 323 310 327 0.86 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF415-214 - 567 9.4e-14 50.7 45.2 4 11 0.0016 0.92 9.2 0.1 3 20 340 358 338 359 0.81 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF415-214 - 567 9.4e-14 50.7 45.2 5 11 0.00082 0.46 10.1 0.1 3 21 368 387 366 387 0.92 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF415-214 - 567 9.4e-14 50.7 45.2 6 11 0.0054 3.1 7.5 0.1 3 16 396 410 394 414 0.81 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF415-214 - 567 9.4e-14 50.7 45.2 7 11 0.012 6.7 6.4 0.1 3 20 424 442 422 443 0.79 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF415-214 - 567 9.4e-14 50.7 45.2 8 11 0.00096 0.54 9.9 0.2 3 21 452 471 450 471 0.92 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF415-214 - 567 9.4e-14 50.7 45.2 9 11 0.0016 0.92 9.2 0.1 3 21 480 499 478 499 0.92 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF415-214 - 567 9.4e-14 50.7 45.2 10 11 0.0047 2.6 7.7 0.1 3 20 508 526 506 527 0.80 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF415-214 - 567 9.4e-14 50.7 45.2 11 11 0.0033 1.8 8.2 0.1 3 14 536 547 534 554 0.90 Ubiquitin-Binding Zinc Finger C1_1 PF00130.22 53 ZNF415-214 - 567 5e-11 42.3 44.3 1 10 0.068 38 4.3 0.2 22 38 249 265 231 271 0.64 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF415-214 - 567 5e-11 42.3 44.3 2 10 0.00036 0.2 11.5 3.4 2 47 274 331 274 337 0.88 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF415-214 - 567 5e-11 42.3 44.3 3 10 0.019 11 6.0 2.6 4 37 305 348 302 352 0.82 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF415-214 - 567 5e-11 42.3 44.3 4 10 0.0035 1.9 8.4 1.7 9 37 337 376 330 380 0.85 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF415-214 - 567 5e-11 42.3 44.3 5 10 0.0016 0.9 9.5 1.9 4 37 361 404 358 408 0.82 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF415-214 - 567 5e-11 42.3 44.3 6 10 6.5e-05 0.036 13.9 1.0 2 37 414 460 414 466 0.87 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF415-214 - 567 5e-11 42.3 44.3 7 10 0.0024 1.3 8.9 1.9 4 35 445 486 438 494 0.79 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF415-214 - 567 5e-11 42.3 44.3 8 10 0.0014 0.79 9.7 2.2 1 37 470 516 470 520 0.83 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF415-214 - 567 5e-11 42.3 44.3 9 10 8.8e-05 0.049 13.5 1.3 1 37 498 544 498 548 0.86 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF415-214 - 567 5e-11 42.3 44.3 10 10 0.0024 1.3 8.9 0.2 1 22 526 549 526 558 0.79 Phorbol esters/diacylglycerol binding domain (C1 domain) XPA_N PF01286.18 32 ZNF415-214 - 567 2.8e-07 30.4 35.3 1 11 0.27 1.5e+02 2.5 0.0 3 12 257 266 256 277 0.84 XPA protein N-terminal XPA_N PF01286.18 32 ZNF415-214 - 567 2.8e-07 30.4 35.3 2 11 0.32 1.8e+02 2.3 1.0 3 12 285 294 283 298 0.89 XPA protein N-terminal XPA_N PF01286.18 32 ZNF415-214 - 567 2.8e-07 30.4 35.3 3 11 0.32 1.8e+02 2.3 0.1 3 11 313 321 311 325 0.87 XPA protein N-terminal XPA_N PF01286.18 32 ZNF415-214 - 567 2.8e-07 30.4 35.3 4 11 0.012 6.6 6.9 0.0 3 12 341 350 339 358 0.86 XPA protein N-terminal XPA_N PF01286.18 32 ZNF415-214 - 567 2.8e-07 30.4 35.3 5 11 0.043 24 5.1 0.1 3 13 369 379 367 386 0.84 XPA protein N-terminal XPA_N PF01286.18 32 ZNF415-214 - 567 2.8e-07 30.4 35.3 6 11 0.043 24 5.1 0.0 3 13 397 407 395 415 0.85 XPA protein N-terminal XPA_N PF01286.18 32 ZNF415-214 - 567 2.8e-07 30.4 35.3 7 11 0.09 50 4.0 0.1 3 11 425 433 423 440 0.88 XPA protein N-terminal XPA_N PF01286.18 32 ZNF415-214 - 567 2.8e-07 30.4 35.3 8 11 0.02 11 6.1 0.1 3 12 453 462 451 469 0.90 XPA protein N-terminal XPA_N PF01286.18 32 ZNF415-214 - 567 2.8e-07 30.4 35.3 9 11 0.16 89 3.3 0.0 3 12 481 490 479 497 0.89 XPA protein N-terminal XPA_N PF01286.18 32 ZNF415-214 - 567 2.8e-07 30.4 35.3 10 11 0.032 18 5.5 0.1 3 12 509 518 507 519 0.88 XPA protein N-terminal XPA_N PF01286.18 32 ZNF415-214 - 567 2.8e-07 30.4 35.3 11 11 0.12 68 3.6 0.1 3 12 537 546 535 547 0.88 XPA protein N-terminal # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF415-214.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF415-214.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF415-214.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF415-214.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF415-214.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:05:42 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF415-215.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF415-215.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF415-215.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF415-215.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF415-215.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:05:42 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF415-216.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF415-216.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF415-216.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF415-216.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF415-216.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:05:43 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZNF415-217 - 542 7.3e-91 294.9 75.8 1 13 0.21 1.2e+02 3.4 0.0 12 23 200 211 198 214 0.86 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF415-217 - 542 7.3e-91 294.9 75.8 2 13 1.8e-06 0.00097 19.5 0.1 8 25 223 241 216 242 0.81 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF415-217 - 542 7.3e-91 294.9 75.8 3 13 1.7e-10 9e-08 32.2 0.4 1 25 245 269 245 270 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF415-217 - 542 7.3e-91 294.9 75.8 4 13 1.3e-10 7.3e-08 32.5 0.9 4 25 276 297 274 298 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF415-217 - 542 7.3e-91 294.9 75.8 5 13 1.7e-09 9.3e-07 29.0 0.6 4 25 304 325 302 325 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF415-217 - 542 7.3e-91 294.9 75.8 6 13 3.3e-08 1.8e-05 24.9 0.5 2 25 330 353 329 354 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF415-217 - 542 7.3e-91 294.9 75.8 7 13 8.9e-11 4.8e-08 33.1 0.3 2 25 358 381 357 382 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF415-217 - 542 7.3e-91 294.9 75.8 8 13 2.4e-10 1.3e-07 31.7 0.4 1 25 385 409 385 410 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF415-217 - 542 7.3e-91 294.9 75.8 9 13 6.6e-11 3.6e-08 33.5 1.6 1 25 413 437 413 437 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF415-217 - 542 7.3e-91 294.9 75.8 10 13 3.2e-09 1.8e-06 28.1 0.3 1 25 441 465 441 465 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF415-217 - 542 7.3e-91 294.9 75.8 11 13 1.9e-09 1e-06 28.8 0.4 2 25 470 493 469 493 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF415-217 - 542 7.3e-91 294.9 75.8 12 13 1.2e-11 6.5e-09 35.8 0.5 1 25 497 521 497 521 0.97 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF415-217 - 542 7.3e-91 294.9 75.8 13 13 0.00046 0.25 11.9 0.5 1 16 525 540 525 540 0.94 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZNF415-217 - 542 1.1e-67 220.8 87.5 1 12 9.7 5.3e+03 -1.7 0.1 5 13 93 101 83 103 0.69 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF415-217 - 542 1.1e-67 220.8 87.5 2 12 9e-10 4.9e-07 29.9 0.4 1 23 231 253 231 253 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF415-217 - 542 1.1e-67 220.8 87.5 3 12 8.3e-08 4.5e-05 23.7 3.3 1 23 259 281 259 281 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF415-217 - 542 1.1e-67 220.8 87.5 4 12 2.2e-07 0.00012 22.3 3.5 1 23 287 309 287 309 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF415-217 - 542 1.1e-67 220.8 87.5 5 12 1.7e-07 9e-05 22.7 0.4 1 23 315 337 315 337 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF415-217 - 542 1.1e-67 220.8 87.5 6 12 2.6e-09 1.4e-06 28.4 0.6 1 23 343 365 343 365 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF415-217 - 542 1.1e-67 220.8 87.5 7 12 2.9e-09 1.5e-06 28.3 0.4 1 23 371 393 371 393 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF415-217 - 542 1.1e-67 220.8 87.5 8 12 3.9e-09 2.1e-06 27.9 2.4 1 23 399 421 399 421 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF415-217 - 542 1.1e-67 220.8 87.5 9 12 1e-07 5.7e-05 23.4 1.0 1 23 427 449 427 449 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF415-217 - 542 1.1e-67 220.8 87.5 10 12 1.5e-06 0.00082 19.7 1.4 1 23 455 477 455 477 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF415-217 - 542 1.1e-67 220.8 87.5 11 12 2e-08 1.1e-05 25.6 0.5 1 23 483 505 483 505 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF415-217 - 542 1.1e-67 220.8 87.5 12 12 3.1e-08 1.7e-05 25.0 0.7 1 23 511 533 511 533 0.98 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZNF415-217 - 542 2.1e-37 124.6 78.2 1 11 1.6e-07 8.6e-05 23.1 0.6 1 23 231 253 231 254 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF415-217 - 542 2.1e-37 124.6 78.2 2 11 0.0007 0.38 11.7 2.6 1 23 259 281 259 282 0.90 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF415-217 - 542 2.1e-37 124.6 78.2 3 11 0.00028 0.15 12.9 2.4 1 23 287 309 287 310 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF415-217 - 542 2.1e-37 124.6 78.2 4 11 0.00011 0.058 14.3 0.4 1 23 315 337 315 338 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF415-217 - 542 2.1e-37 124.6 78.2 5 11 1.1e-05 0.006 17.3 0.5 1 23 343 365 343 366 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF415-217 - 542 2.1e-37 124.6 78.2 6 11 1e-06 0.00054 20.6 0.6 1 23 371 393 371 394 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF415-217 - 542 2.1e-37 124.6 78.2 7 11 2.3e-05 0.012 16.3 1.9 1 23 399 421 399 422 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF415-217 - 542 2.1e-37 124.6 78.2 8 11 0.00033 0.18 12.7 0.8 1 23 427 449 427 450 0.91 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF415-217 - 542 2.1e-37 124.6 78.2 9 11 0.00011 0.059 14.2 1.2 1 23 455 477 455 478 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF415-217 - 542 2.1e-37 124.6 78.2 10 11 3.9e-05 0.021 15.6 0.3 1 23 483 505 483 506 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF415-217 - 542 2.1e-37 124.6 78.2 11 11 3.1e-05 0.017 15.9 0.5 1 23 511 533 511 534 0.92 C2H2-type zinc finger zf-C2H2_11 PF16622.5 29 ZNF415-217 - 542 3.3e-20 71.5 46.4 1 11 0.0015 0.82 9.5 0.1 5 25 231 251 228 253 0.90 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF415-217 - 542 3.3e-20 71.5 46.4 2 11 0.045 24 4.8 0.8 5 25 259 279 256 281 0.87 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF415-217 - 542 3.3e-20 71.5 46.4 3 11 2.3 1.3e+03 -0.7 0.7 5 16 287 298 285 306 0.76 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF415-217 - 542 3.3e-20 71.5 46.4 4 11 0.023 12 5.7 0.1 7 26 317 336 314 337 0.88 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF415-217 - 542 3.3e-20 71.5 46.4 5 11 0.001 0.55 10.0 0.2 5 26 343 364 341 365 0.94 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF415-217 - 542 3.3e-20 71.5 46.4 6 11 1.1e-05 0.0062 16.3 0.1 5 26 371 392 368 393 0.94 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF415-217 - 542 3.3e-20 71.5 46.4 7 11 0.013 6.9 6.5 0.2 5 25 399 419 396 421 0.88 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF415-217 - 542 3.3e-20 71.5 46.4 8 11 0.0044 2.4 8.0 0.1 5 26 427 448 424 449 0.88 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF415-217 - 542 3.3e-20 71.5 46.4 9 11 0.00043 0.23 11.2 0.3 5 26 455 476 452 477 0.91 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF415-217 - 542 3.3e-20 71.5 46.4 10 11 3.1e-05 0.017 14.9 0.0 5 26 483 504 480 505 0.90 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF415-217 - 542 3.3e-20 71.5 46.4 11 11 0.00022 0.12 12.2 0.2 5 26 511 532 509 535 0.90 zinc-finger C2H2-type zf-C2H2_6 PF13912.6 27 ZNF415-217 - 542 3.5e-18 65.1 75.4 1 11 0.00075 0.41 10.7 0.1 2 12 231 241 231 250 0.92 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF415-217 - 542 3.5e-18 65.1 75.4 2 11 0.0028 1.5 8.9 0.9 2 12 259 269 259 279 0.95 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF415-217 - 542 3.5e-18 65.1 75.4 3 11 0.03 16 5.6 2.4 2 13 287 298 287 309 0.88 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF415-217 - 542 3.5e-18 65.1 75.4 4 11 0.0077 4.2 7.5 0.9 2 12 315 325 315 325 0.92 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF415-217 - 542 3.5e-18 65.1 75.4 5 11 6.1e-05 0.033 14.2 0.7 2 24 343 365 343 368 0.88 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF415-217 - 542 3.5e-18 65.1 75.4 6 11 0.00031 0.17 11.9 0.1 2 12 371 381 371 392 0.88 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF415-217 - 542 3.5e-18 65.1 75.4 7 11 0.00044 0.24 11.4 4.5 2 22 399 419 399 422 0.74 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF415-217 - 542 3.5e-18 65.1 75.4 8 11 0.00083 0.45 10.6 1.1 2 20 427 445 427 449 0.89 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF415-217 - 542 3.5e-18 65.1 75.4 9 11 0.0035 1.9 8.6 1.7 2 20 455 473 455 477 0.89 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF415-217 - 542 3.5e-18 65.1 75.4 10 11 0.00036 0.2 11.7 0.3 2 12 483 493 483 502 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF415-217 - 542 3.5e-18 65.1 75.4 11 11 0.006 3.3 7.8 0.2 2 12 511 521 511 534 0.91 C2H2-type zinc finger Zn-ribbon_8 PF09723.10 40 ZNF415-217 - 542 8e-16 57.9 54.3 1 11 0.0043 2.3 8.4 3.6 6 35 231 267 230 270 0.78 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF415-217 - 542 8e-16 57.9 54.3 2 11 0.19 1e+02 3.1 7.1 6 33 259 293 258 294 0.81 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF415-217 - 542 8e-16 57.9 54.3 3 11 0.0008 0.44 10.7 5.0 6 34 287 322 285 328 0.85 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF415-217 - 542 8e-16 57.9 54.3 4 11 0.0077 4.2 7.6 0.3 6 19 315 328 314 332 0.86 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF415-217 - 542 8e-16 57.9 54.3 5 11 2.4e-05 0.013 15.6 4.1 6 34 343 378 342 382 0.91 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF415-217 - 542 8e-16 57.9 54.3 6 11 0.0016 0.89 9.7 0.3 6 19 371 384 370 391 0.84 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF415-217 - 542 8e-16 57.9 54.3 7 11 0.00015 0.08 13.1 4.6 6 34 399 434 398 437 0.85 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF415-217 - 542 8e-16 57.9 54.3 8 11 0.0031 1.7 8.8 0.3 6 18 427 439 426 447 0.85 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF415-217 - 542 8e-16 57.9 54.3 9 11 0.0021 1.1 9.4 0.1 6 20 455 469 454 478 0.85 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF415-217 - 542 8e-16 57.9 54.3 10 11 8.2e-05 0.045 13.9 3.1 6 34 483 518 482 523 0.85 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF415-217 - 542 8e-16 57.9 54.3 11 11 0.0033 1.8 8.7 0.2 6 18 511 523 510 533 0.88 Zinc ribbon domain zf_UBZ PF18439.1 32 ZNF415-217 - 542 6.3e-14 51.3 45.2 1 11 0.044 24 4.6 0.0 2 14 230 242 229 249 0.83 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF415-217 - 542 6.3e-14 51.3 45.2 2 11 0.32 1.7e+02 1.9 1.3 3 13 259 269 257 273 0.86 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF415-217 - 542 6.3e-14 51.3 45.2 3 11 0.28 1.5e+02 2.0 0.9 3 14 287 298 285 302 0.86 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF415-217 - 542 6.3e-14 51.3 45.2 4 11 0.0016 0.88 9.2 0.1 3 20 315 333 313 334 0.81 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF415-217 - 542 6.3e-14 51.3 45.2 5 11 0.0008 0.44 10.2 0.1 3 21 343 362 341 362 0.92 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF415-217 - 542 6.3e-14 51.3 45.2 6 11 0.0053 2.9 7.6 0.1 3 16 371 385 369 389 0.81 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF415-217 - 542 6.3e-14 51.3 45.2 7 11 0.012 6.3 6.5 0.1 3 20 399 417 397 418 0.79 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF415-217 - 542 6.3e-14 51.3 45.2 8 11 0.00094 0.51 10.0 0.2 3 21 427 446 425 446 0.92 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF415-217 - 542 6.3e-14 51.3 45.2 9 11 0.0016 0.87 9.2 0.1 3 21 455 474 453 474 0.92 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF415-217 - 542 6.3e-14 51.3 45.2 10 11 0.0046 2.5 7.8 0.1 3 20 483 501 481 502 0.80 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF415-217 - 542 6.3e-14 51.3 45.2 11 11 0.0032 1.7 8.3 0.1 3 14 511 522 509 529 0.90 Ubiquitin-Binding Zinc Finger C1_1 PF00130.22 53 ZNF415-217 - 542 4.4e-11 42.5 44.7 1 10 0.066 36 4.3 0.2 22 38 224 240 206 246 0.64 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF415-217 - 542 4.4e-11 42.5 44.7 2 10 0.00035 0.19 11.6 3.4 2 47 249 306 249 312 0.88 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF415-217 - 542 4.4e-11 42.5 44.7 3 10 0.017 9.3 6.2 2.5 4 37 280 323 277 327 0.82 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF415-217 - 542 4.4e-11 42.5 44.7 4 10 0.0032 1.7 8.6 1.6 9 37 312 351 305 355 0.85 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF415-217 - 542 4.4e-11 42.5 44.7 5 10 0.0016 0.88 9.5 1.9 4 37 336 379 333 382 0.81 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF415-217 - 542 4.4e-11 42.5 44.7 6 10 5.9e-05 0.032 14.1 0.9 2 37 389 435 389 441 0.87 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF415-217 - 542 4.4e-11 42.5 44.7 7 10 0.0019 1 9.3 1.7 4 35 420 461 413 469 0.79 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF415-217 - 542 4.4e-11 42.5 44.7 8 10 0.0022 1.2 9.1 2.5 1 36 445 490 445 492 0.83 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF415-217 - 542 4.4e-11 42.5 44.7 9 10 0.00012 0.066 13.1 1.6 1 37 473 519 473 522 0.86 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF415-217 - 542 4.4e-11 42.5 44.7 10 10 0.0023 1.3 9.0 0.3 1 22 501 524 501 535 0.79 Phorbol esters/diacylglycerol binding domain (C1 domain) XPA_N PF01286.18 32 ZNF415-217 - 542 1.9e-07 31.0 35.3 1 11 0.26 1.4e+02 2.6 0.0 3 12 232 241 231 252 0.84 XPA protein N-terminal XPA_N PF01286.18 32 ZNF415-217 - 542 1.9e-07 31.0 35.3 2 11 0.31 1.7e+02 2.3 1.0 3 12 260 269 258 273 0.89 XPA protein N-terminal XPA_N PF01286.18 32 ZNF415-217 - 542 1.9e-07 31.0 35.3 3 11 0.32 1.7e+02 2.3 0.1 3 11 288 296 286 300 0.87 XPA protein N-terminal XPA_N PF01286.18 32 ZNF415-217 - 542 1.9e-07 31.0 35.3 4 11 0.012 6.3 6.9 0.0 3 12 316 325 314 333 0.86 XPA protein N-terminal XPA_N PF01286.18 32 ZNF415-217 - 542 1.9e-07 31.0 35.3 5 11 0.042 23 5.1 0.1 3 13 344 354 342 361 0.84 XPA protein N-terminal XPA_N PF01286.18 32 ZNF415-217 - 542 1.9e-07 31.0 35.3 6 11 0.042 23 5.1 0.0 3 13 372 382 370 390 0.85 XPA protein N-terminal XPA_N PF01286.18 32 ZNF415-217 - 542 1.9e-07 31.0 35.3 7 11 0.088 48 4.1 0.1 3 11 400 408 398 415 0.88 XPA protein N-terminal XPA_N PF01286.18 32 ZNF415-217 - 542 1.9e-07 31.0 35.3 8 11 0.02 11 6.2 0.1 3 12 428 437 426 444 0.90 XPA protein N-terminal XPA_N PF01286.18 32 ZNF415-217 - 542 1.9e-07 31.0 35.3 9 11 0.16 84 3.3 0.0 3 12 456 465 454 472 0.89 XPA protein N-terminal XPA_N PF01286.18 32 ZNF415-217 - 542 1.9e-07 31.0 35.3 10 11 0.031 17 5.6 0.1 3 12 484 493 482 494 0.88 XPA protein N-terminal XPA_N PF01286.18 32 ZNF415-217 - 542 1.9e-07 31.0 35.3 11 11 0.12 65 3.7 0.1 3 12 512 521 510 522 0.88 XPA protein N-terminal # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF415-217.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF415-217.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF415-217.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF415-217.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF415-217.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:05:43 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- KRAB PF01352.27 42 ZNF415-218 - 109 2.7e-25 87.7 0.2 1 1 2.1e-29 3.7e-25 87.3 0.2 2 41 6 45 5 46 0.97 KRAB box # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF415-218.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF415-218.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF415-218.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF415-218.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF415-218.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:05:43 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF415-219.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF415-219.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF415-219.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF415-219.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF415-219.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:05:44 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZNF415-220 - 542 7.3e-91 294.9 75.8 1 13 0.21 1.2e+02 3.4 0.0 12 23 200 211 198 214 0.86 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF415-220 - 542 7.3e-91 294.9 75.8 2 13 1.8e-06 0.00097 19.5 0.1 8 25 223 241 216 242 0.81 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF415-220 - 542 7.3e-91 294.9 75.8 3 13 1.7e-10 9e-08 32.2 0.4 1 25 245 269 245 270 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF415-220 - 542 7.3e-91 294.9 75.8 4 13 1.3e-10 7.3e-08 32.5 0.9 4 25 276 297 274 298 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF415-220 - 542 7.3e-91 294.9 75.8 5 13 1.7e-09 9.3e-07 29.0 0.6 4 25 304 325 302 325 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF415-220 - 542 7.3e-91 294.9 75.8 6 13 3.3e-08 1.8e-05 24.9 0.5 2 25 330 353 329 354 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF415-220 - 542 7.3e-91 294.9 75.8 7 13 8.9e-11 4.8e-08 33.1 0.3 2 25 358 381 357 382 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF415-220 - 542 7.3e-91 294.9 75.8 8 13 2.4e-10 1.3e-07 31.7 0.4 1 25 385 409 385 410 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF415-220 - 542 7.3e-91 294.9 75.8 9 13 6.6e-11 3.6e-08 33.5 1.6 1 25 413 437 413 437 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF415-220 - 542 7.3e-91 294.9 75.8 10 13 3.2e-09 1.8e-06 28.1 0.3 1 25 441 465 441 465 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF415-220 - 542 7.3e-91 294.9 75.8 11 13 1.9e-09 1e-06 28.8 0.4 2 25 470 493 469 493 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF415-220 - 542 7.3e-91 294.9 75.8 12 13 1.2e-11 6.5e-09 35.8 0.5 1 25 497 521 497 521 0.97 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF415-220 - 542 7.3e-91 294.9 75.8 13 13 0.00046 0.25 11.9 0.5 1 16 525 540 525 540 0.94 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZNF415-220 - 542 1.1e-67 220.8 87.5 1 12 9.7 5.3e+03 -1.7 0.1 5 13 93 101 83 103 0.69 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF415-220 - 542 1.1e-67 220.8 87.5 2 12 9e-10 4.9e-07 29.9 0.4 1 23 231 253 231 253 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF415-220 - 542 1.1e-67 220.8 87.5 3 12 8.3e-08 4.5e-05 23.7 3.3 1 23 259 281 259 281 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF415-220 - 542 1.1e-67 220.8 87.5 4 12 2.2e-07 0.00012 22.3 3.5 1 23 287 309 287 309 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF415-220 - 542 1.1e-67 220.8 87.5 5 12 1.7e-07 9e-05 22.7 0.4 1 23 315 337 315 337 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF415-220 - 542 1.1e-67 220.8 87.5 6 12 2.6e-09 1.4e-06 28.4 0.6 1 23 343 365 343 365 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF415-220 - 542 1.1e-67 220.8 87.5 7 12 2.9e-09 1.5e-06 28.3 0.4 1 23 371 393 371 393 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF415-220 - 542 1.1e-67 220.8 87.5 8 12 3.9e-09 2.1e-06 27.9 2.4 1 23 399 421 399 421 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF415-220 - 542 1.1e-67 220.8 87.5 9 12 1e-07 5.7e-05 23.4 1.0 1 23 427 449 427 449 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF415-220 - 542 1.1e-67 220.8 87.5 10 12 1.5e-06 0.00082 19.7 1.4 1 23 455 477 455 477 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF415-220 - 542 1.1e-67 220.8 87.5 11 12 2e-08 1.1e-05 25.6 0.5 1 23 483 505 483 505 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF415-220 - 542 1.1e-67 220.8 87.5 12 12 3.1e-08 1.7e-05 25.0 0.7 1 23 511 533 511 533 0.98 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZNF415-220 - 542 2.1e-37 124.6 78.2 1 11 1.6e-07 8.6e-05 23.1 0.6 1 23 231 253 231 254 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF415-220 - 542 2.1e-37 124.6 78.2 2 11 0.0007 0.38 11.7 2.6 1 23 259 281 259 282 0.90 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF415-220 - 542 2.1e-37 124.6 78.2 3 11 0.00028 0.15 12.9 2.4 1 23 287 309 287 310 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF415-220 - 542 2.1e-37 124.6 78.2 4 11 0.00011 0.058 14.3 0.4 1 23 315 337 315 338 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF415-220 - 542 2.1e-37 124.6 78.2 5 11 1.1e-05 0.006 17.3 0.5 1 23 343 365 343 366 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF415-220 - 542 2.1e-37 124.6 78.2 6 11 1e-06 0.00054 20.6 0.6 1 23 371 393 371 394 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF415-220 - 542 2.1e-37 124.6 78.2 7 11 2.3e-05 0.012 16.3 1.9 1 23 399 421 399 422 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF415-220 - 542 2.1e-37 124.6 78.2 8 11 0.00033 0.18 12.7 0.8 1 23 427 449 427 450 0.91 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF415-220 - 542 2.1e-37 124.6 78.2 9 11 0.00011 0.059 14.2 1.2 1 23 455 477 455 478 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF415-220 - 542 2.1e-37 124.6 78.2 10 11 3.9e-05 0.021 15.6 0.3 1 23 483 505 483 506 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF415-220 - 542 2.1e-37 124.6 78.2 11 11 3.1e-05 0.017 15.9 0.5 1 23 511 533 511 534 0.92 C2H2-type zinc finger zf-C2H2_11 PF16622.5 29 ZNF415-220 - 542 3.3e-20 71.5 46.4 1 11 0.0015 0.82 9.5 0.1 5 25 231 251 228 253 0.90 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF415-220 - 542 3.3e-20 71.5 46.4 2 11 0.045 24 4.8 0.8 5 25 259 279 256 281 0.87 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF415-220 - 542 3.3e-20 71.5 46.4 3 11 2.3 1.3e+03 -0.7 0.7 5 16 287 298 285 306 0.76 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF415-220 - 542 3.3e-20 71.5 46.4 4 11 0.023 12 5.7 0.1 7 26 317 336 314 337 0.88 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF415-220 - 542 3.3e-20 71.5 46.4 5 11 0.001 0.55 10.0 0.2 5 26 343 364 341 365 0.94 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF415-220 - 542 3.3e-20 71.5 46.4 6 11 1.1e-05 0.0062 16.3 0.1 5 26 371 392 368 393 0.94 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF415-220 - 542 3.3e-20 71.5 46.4 7 11 0.013 6.9 6.5 0.2 5 25 399 419 396 421 0.88 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF415-220 - 542 3.3e-20 71.5 46.4 8 11 0.0044 2.4 8.0 0.1 5 26 427 448 424 449 0.88 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF415-220 - 542 3.3e-20 71.5 46.4 9 11 0.00043 0.23 11.2 0.3 5 26 455 476 452 477 0.91 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF415-220 - 542 3.3e-20 71.5 46.4 10 11 3.1e-05 0.017 14.9 0.0 5 26 483 504 480 505 0.90 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF415-220 - 542 3.3e-20 71.5 46.4 11 11 0.00022 0.12 12.2 0.2 5 26 511 532 509 535 0.90 zinc-finger C2H2-type zf-C2H2_6 PF13912.6 27 ZNF415-220 - 542 3.5e-18 65.1 75.4 1 11 0.00075 0.41 10.7 0.1 2 12 231 241 231 250 0.92 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF415-220 - 542 3.5e-18 65.1 75.4 2 11 0.0028 1.5 8.9 0.9 2 12 259 269 259 279 0.95 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF415-220 - 542 3.5e-18 65.1 75.4 3 11 0.03 16 5.6 2.4 2 13 287 298 287 309 0.88 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF415-220 - 542 3.5e-18 65.1 75.4 4 11 0.0077 4.2 7.5 0.9 2 12 315 325 315 325 0.92 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF415-220 - 542 3.5e-18 65.1 75.4 5 11 6.1e-05 0.033 14.2 0.7 2 24 343 365 343 368 0.88 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF415-220 - 542 3.5e-18 65.1 75.4 6 11 0.00031 0.17 11.9 0.1 2 12 371 381 371 392 0.88 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF415-220 - 542 3.5e-18 65.1 75.4 7 11 0.00044 0.24 11.4 4.5 2 22 399 419 399 422 0.74 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF415-220 - 542 3.5e-18 65.1 75.4 8 11 0.00083 0.45 10.6 1.1 2 20 427 445 427 449 0.89 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF415-220 - 542 3.5e-18 65.1 75.4 9 11 0.0035 1.9 8.6 1.7 2 20 455 473 455 477 0.89 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF415-220 - 542 3.5e-18 65.1 75.4 10 11 0.00036 0.2 11.7 0.3 2 12 483 493 483 502 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF415-220 - 542 3.5e-18 65.1 75.4 11 11 0.006 3.3 7.8 0.2 2 12 511 521 511 534 0.91 C2H2-type zinc finger Zn-ribbon_8 PF09723.10 40 ZNF415-220 - 542 8e-16 57.9 54.3 1 11 0.0043 2.3 8.4 3.6 6 35 231 267 230 270 0.78 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF415-220 - 542 8e-16 57.9 54.3 2 11 0.19 1e+02 3.1 7.1 6 33 259 293 258 294 0.81 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF415-220 - 542 8e-16 57.9 54.3 3 11 0.0008 0.44 10.7 5.0 6 34 287 322 285 328 0.85 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF415-220 - 542 8e-16 57.9 54.3 4 11 0.0077 4.2 7.6 0.3 6 19 315 328 314 332 0.86 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF415-220 - 542 8e-16 57.9 54.3 5 11 2.4e-05 0.013 15.6 4.1 6 34 343 378 342 382 0.91 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF415-220 - 542 8e-16 57.9 54.3 6 11 0.0016 0.89 9.7 0.3 6 19 371 384 370 391 0.84 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF415-220 - 542 8e-16 57.9 54.3 7 11 0.00015 0.08 13.1 4.6 6 34 399 434 398 437 0.85 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF415-220 - 542 8e-16 57.9 54.3 8 11 0.0031 1.7 8.8 0.3 6 18 427 439 426 447 0.85 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF415-220 - 542 8e-16 57.9 54.3 9 11 0.0021 1.1 9.4 0.1 6 20 455 469 454 478 0.85 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF415-220 - 542 8e-16 57.9 54.3 10 11 8.2e-05 0.045 13.9 3.1 6 34 483 518 482 523 0.85 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF415-220 - 542 8e-16 57.9 54.3 11 11 0.0033 1.8 8.7 0.2 6 18 511 523 510 533 0.88 Zinc ribbon domain zf_UBZ PF18439.1 32 ZNF415-220 - 542 6.3e-14 51.3 45.2 1 11 0.044 24 4.6 0.0 2 14 230 242 229 249 0.83 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF415-220 - 542 6.3e-14 51.3 45.2 2 11 0.32 1.7e+02 1.9 1.3 3 13 259 269 257 273 0.86 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF415-220 - 542 6.3e-14 51.3 45.2 3 11 0.28 1.5e+02 2.0 0.9 3 14 287 298 285 302 0.86 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF415-220 - 542 6.3e-14 51.3 45.2 4 11 0.0016 0.88 9.2 0.1 3 20 315 333 313 334 0.81 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF415-220 - 542 6.3e-14 51.3 45.2 5 11 0.0008 0.44 10.2 0.1 3 21 343 362 341 362 0.92 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF415-220 - 542 6.3e-14 51.3 45.2 6 11 0.0053 2.9 7.6 0.1 3 16 371 385 369 389 0.81 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF415-220 - 542 6.3e-14 51.3 45.2 7 11 0.012 6.3 6.5 0.1 3 20 399 417 397 418 0.79 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF415-220 - 542 6.3e-14 51.3 45.2 8 11 0.00094 0.51 10.0 0.2 3 21 427 446 425 446 0.92 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF415-220 - 542 6.3e-14 51.3 45.2 9 11 0.0016 0.87 9.2 0.1 3 21 455 474 453 474 0.92 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF415-220 - 542 6.3e-14 51.3 45.2 10 11 0.0046 2.5 7.8 0.1 3 20 483 501 481 502 0.80 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF415-220 - 542 6.3e-14 51.3 45.2 11 11 0.0032 1.7 8.3 0.1 3 14 511 522 509 529 0.90 Ubiquitin-Binding Zinc Finger C1_1 PF00130.22 53 ZNF415-220 - 542 4.4e-11 42.5 44.7 1 10 0.066 36 4.3 0.2 22 38 224 240 206 246 0.64 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF415-220 - 542 4.4e-11 42.5 44.7 2 10 0.00035 0.19 11.6 3.4 2 47 249 306 249 312 0.88 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF415-220 - 542 4.4e-11 42.5 44.7 3 10 0.017 9.3 6.2 2.5 4 37 280 323 277 327 0.82 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF415-220 - 542 4.4e-11 42.5 44.7 4 10 0.0032 1.7 8.6 1.6 9 37 312 351 305 355 0.85 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF415-220 - 542 4.4e-11 42.5 44.7 5 10 0.0016 0.88 9.5 1.9 4 37 336 379 333 382 0.81 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF415-220 - 542 4.4e-11 42.5 44.7 6 10 5.9e-05 0.032 14.1 0.9 2 37 389 435 389 441 0.87 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF415-220 - 542 4.4e-11 42.5 44.7 7 10 0.0019 1 9.3 1.7 4 35 420 461 413 469 0.79 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF415-220 - 542 4.4e-11 42.5 44.7 8 10 0.0022 1.2 9.1 2.5 1 36 445 490 445 492 0.83 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF415-220 - 542 4.4e-11 42.5 44.7 9 10 0.00012 0.066 13.1 1.6 1 37 473 519 473 522 0.86 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF415-220 - 542 4.4e-11 42.5 44.7 10 10 0.0023 1.3 9.0 0.3 1 22 501 524 501 535 0.79 Phorbol esters/diacylglycerol binding domain (C1 domain) XPA_N PF01286.18 32 ZNF415-220 - 542 1.9e-07 31.0 35.3 1 11 0.26 1.4e+02 2.6 0.0 3 12 232 241 231 252 0.84 XPA protein N-terminal XPA_N PF01286.18 32 ZNF415-220 - 542 1.9e-07 31.0 35.3 2 11 0.31 1.7e+02 2.3 1.0 3 12 260 269 258 273 0.89 XPA protein N-terminal XPA_N PF01286.18 32 ZNF415-220 - 542 1.9e-07 31.0 35.3 3 11 0.32 1.7e+02 2.3 0.1 3 11 288 296 286 300 0.87 XPA protein N-terminal XPA_N PF01286.18 32 ZNF415-220 - 542 1.9e-07 31.0 35.3 4 11 0.012 6.3 6.9 0.0 3 12 316 325 314 333 0.86 XPA protein N-terminal XPA_N PF01286.18 32 ZNF415-220 - 542 1.9e-07 31.0 35.3 5 11 0.042 23 5.1 0.1 3 13 344 354 342 361 0.84 XPA protein N-terminal XPA_N PF01286.18 32 ZNF415-220 - 542 1.9e-07 31.0 35.3 6 11 0.042 23 5.1 0.0 3 13 372 382 370 390 0.85 XPA protein N-terminal XPA_N PF01286.18 32 ZNF415-220 - 542 1.9e-07 31.0 35.3 7 11 0.088 48 4.1 0.1 3 11 400 408 398 415 0.88 XPA protein N-terminal XPA_N PF01286.18 32 ZNF415-220 - 542 1.9e-07 31.0 35.3 8 11 0.02 11 6.2 0.1 3 12 428 437 426 444 0.90 XPA protein N-terminal XPA_N PF01286.18 32 ZNF415-220 - 542 1.9e-07 31.0 35.3 9 11 0.16 84 3.3 0.0 3 12 456 465 454 472 0.89 XPA protein N-terminal XPA_N PF01286.18 32 ZNF415-220 - 542 1.9e-07 31.0 35.3 10 11 0.031 17 5.6 0.1 3 12 484 493 482 494 0.88 XPA protein N-terminal XPA_N PF01286.18 32 ZNF415-220 - 542 1.9e-07 31.0 35.3 11 11 0.12 65 3.7 0.1 3 12 512 521 510 522 0.88 XPA protein N-terminal # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF415-220.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF415-220.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF415-220.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF415-220.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF415-220.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:05:44 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- KRAB PF01352.27 42 ZNF415-221 - 75 1.8e-26 91.5 0.2 1 1 1.3e-30 2.3e-26 91.2 0.2 2 42 6 46 5 46 0.98 KRAB box # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF415-221.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF415-221.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF415-221.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF415-221.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF415-221.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:05:45 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF415-222.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF415-222.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF415-222.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF415-222.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF415-222.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:05:45 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF415-223.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF415-223.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF415-223.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF415-223.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF415-223.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:05:47 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZNF415-224 - 325 2e-93 303.0 70.9 1 12 2.4e-06 0.00095 19.5 0.1 8 25 7 24 4 25 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF415-224 - 325 2e-93 303.0 70.9 2 12 1.2e-10 4.8e-08 33.1 0.4 1 25 28 52 28 53 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF415-224 - 325 2e-93 303.0 70.9 3 12 1e-10 3.9e-08 33.4 0.9 4 25 59 80 57 81 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF415-224 - 325 2e-93 303.0 70.9 4 12 1.3e-09 5e-07 29.9 0.6 4 25 87 108 85 108 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF415-224 - 325 2e-93 303.0 70.9 5 12 2.5e-08 9.7e-06 25.8 0.5 2 25 113 136 112 137 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF415-224 - 325 2e-93 303.0 70.9 6 12 6.6e-11 2.6e-08 33.9 0.3 2 25 141 164 140 165 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF415-224 - 325 2e-93 303.0 70.9 7 12 1.8e-10 7e-08 32.6 0.4 1 25 168 192 168 193 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF415-224 - 325 2e-93 303.0 70.9 8 12 4.9e-11 1.9e-08 34.3 1.7 1 25 196 220 196 220 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF415-224 - 325 2e-93 303.0 70.9 9 12 2.4e-09 9.4e-07 29.0 0.3 1 25 224 248 224 248 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF415-224 - 325 2e-93 303.0 70.9 10 12 1.4e-09 5.6e-07 29.7 0.4 1 25 252 276 252 276 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF415-224 - 325 2e-93 303.0 70.9 11 12 8.9e-12 3.5e-09 36.7 0.5 1 25 280 304 280 304 0.97 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF415-224 - 325 2e-93 303.0 70.9 12 12 0.00035 0.14 12.7 0.5 1 16 308 323 308 323 0.94 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZNF415-224 - 325 6.3e-72 234.2 81.4 1 11 6.7e-10 2.6e-07 30.7 0.4 1 23 14 36 14 36 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF415-224 - 325 6.3e-72 234.2 81.4 2 11 6.2e-08 2.4e-05 24.5 3.3 1 23 42 64 42 64 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF415-224 - 325 6.3e-72 234.2 81.4 3 11 1.6e-07 6.4e-05 23.2 3.5 1 23 70 92 70 92 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF415-224 - 325 6.3e-72 234.2 81.4 4 11 1.2e-07 4.8e-05 23.6 0.4 1 23 98 120 98 120 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF415-224 - 325 6.3e-72 234.2 81.4 5 11 2e-09 7.6e-07 29.2 0.6 1 23 126 148 126 148 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF415-224 - 325 6.3e-72 234.2 81.4 6 11 2.1e-09 8.3e-07 29.1 0.4 1 23 154 176 154 176 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF415-224 - 325 6.3e-72 234.2 81.4 7 11 2.9e-09 1.1e-06 28.7 2.4 1 23 182 204 182 204 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF415-224 - 325 6.3e-72 234.2 81.4 8 11 7.7e-08 3e-05 24.2 1.0 1 23 210 232 210 232 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF415-224 - 325 6.3e-72 234.2 81.4 9 11 1.1e-06 0.00044 20.6 1.4 1 23 238 260 238 260 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF415-224 - 325 6.3e-72 234.2 81.4 10 11 1.5e-08 5.7e-06 26.5 0.5 1 23 266 288 266 288 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF415-224 - 325 6.3e-72 234.2 81.4 11 11 2.3e-08 9e-06 25.9 0.7 1 23 294 316 294 316 0.98 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZNF415-224 - 325 4.8e-40 132.8 78.2 1 11 1.2e-07 4.6e-05 23.9 0.6 1 23 14 36 14 37 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF415-224 - 325 4.8e-40 132.8 78.2 2 11 0.00052 0.2 12.6 2.6 1 23 42 64 42 65 0.90 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF415-224 - 325 4.8e-40 132.8 78.2 3 11 0.00021 0.082 13.8 2.4 1 23 70 92 70 93 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF415-224 - 325 4.8e-40 132.8 78.2 4 11 7.8e-05 0.03 15.1 0.4 1 23 98 120 98 121 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF415-224 - 325 4.8e-40 132.8 78.2 5 11 8.2e-06 0.0032 18.2 0.5 1 23 126 148 126 149 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF415-224 - 325 4.8e-40 132.8 78.2 6 11 7.4e-07 0.00029 21.4 0.6 1 23 154 176 154 177 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF415-224 - 325 4.8e-40 132.8 78.2 7 11 1.7e-05 0.0066 17.2 1.9 1 23 182 204 182 205 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF415-224 - 325 4.8e-40 132.8 78.2 8 11 0.00024 0.094 13.6 0.8 1 23 210 232 210 233 0.91 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF415-224 - 325 4.8e-40 132.8 78.2 9 11 8e-05 0.031 15.1 1.2 1 23 238 260 238 261 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF415-224 - 325 4.8e-40 132.8 78.2 10 11 2.9e-05 0.011 16.5 0.3 1 23 266 288 266 289 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF415-224 - 325 4.8e-40 132.8 78.2 11 11 2.3e-05 0.0088 16.8 0.5 1 23 294 316 294 317 0.92 C2H2-type zinc finger zf-C2H2_11 PF16622.5 29 ZNF415-224 - 325 3.5e-23 81.0 45.8 1 11 0.0011 0.44 10.3 0.1 5 25 14 34 11 36 0.90 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF415-224 - 325 3.5e-23 81.0 45.8 2 11 0.034 13 5.6 0.8 5 25 42 62 39 64 0.87 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF415-224 - 325 3.5e-23 81.0 45.8 3 11 1.4 5.4e+02 0.5 0.5 5 16 70 81 67 89 0.76 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF415-224 - 325 3.5e-23 81.0 45.8 4 11 0.017 6.5 6.6 0.1 7 26 100 119 96 120 0.88 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF415-224 - 325 3.5e-23 81.0 45.8 5 11 0.00076 0.3 10.9 0.2 5 26 126 147 124 148 0.94 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF415-224 - 325 3.5e-23 81.0 45.8 6 11 8.5e-06 0.0033 17.1 0.1 5 26 154 175 151 176 0.94 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF415-224 - 325 3.5e-23 81.0 45.8 7 11 0.0096 3.7 7.4 0.2 5 25 182 202 179 204 0.88 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF415-224 - 325 3.5e-23 81.0 45.8 8 11 0.0033 1.3 8.9 0.1 5 26 210 231 207 232 0.88 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF415-224 - 325 3.5e-23 81.0 45.8 9 11 0.00032 0.13 12.1 0.3 5 26 238 259 235 260 0.91 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF415-224 - 325 3.5e-23 81.0 45.8 10 11 2.3e-05 0.0091 15.7 0.0 5 26 266 287 263 288 0.90 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF415-224 - 325 3.5e-23 81.0 45.8 11 11 0.00017 0.064 13.0 0.2 5 26 294 315 292 318 0.90 zinc-finger C2H2-type zf-C2H2_6 PF13912.6 27 ZNF415-224 - 325 1.2e-20 73.0 76.1 1 11 0.00057 0.22 11.6 0.1 2 12 14 24 14 34 0.92 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF415-224 - 325 1.2e-20 73.0 76.1 2 11 0.0023 0.89 9.6 1.1 2 12 42 52 42 64 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF415-224 - 325 1.2e-20 73.0 76.1 3 11 0.024 9.2 6.4 2.5 2 13 70 81 70 92 0.88 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF415-224 - 325 1.2e-20 73.0 76.1 4 11 0.006 2.3 8.3 0.9 2 12 98 108 98 108 0.92 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF415-224 - 325 1.2e-20 73.0 76.1 5 11 4.6e-05 0.018 15.0 0.7 2 24 126 148 126 151 0.88 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF415-224 - 325 1.2e-20 73.0 76.1 6 11 0.00024 0.093 12.8 0.1 2 12 154 164 154 175 0.88 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF415-224 - 325 1.2e-20 73.0 76.1 7 11 0.00043 0.17 11.9 4.7 2 26 182 202 182 204 0.74 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF415-224 - 325 1.2e-20 73.0 76.1 8 11 0.00063 0.25 11.4 1.1 2 20 210 228 210 232 0.89 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF415-224 - 325 1.2e-20 73.0 76.1 9 11 0.0027 1 9.4 1.7 2 20 238 256 238 260 0.89 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF415-224 - 325 1.2e-20 73.0 76.1 10 11 0.00028 0.11 12.5 0.3 2 12 266 276 266 285 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF415-224 - 325 1.2e-20 73.0 76.1 11 11 0.0047 1.8 8.6 0.3 2 12 294 304 294 318 0.90 C2H2-type zinc finger Zn-ribbon_8 PF09723.10 40 ZNF415-224 - 325 8.1e-18 64.3 55.2 1 11 0.0031 1.2 9.3 3.7 6 35 14 50 13 53 0.79 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF415-224 - 325 8.1e-18 64.3 55.2 2 11 0.064 25 5.1 6.8 6 34 42 77 40 81 0.81 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF415-224 - 325 8.1e-18 64.3 55.2 3 11 0.0009 0.35 11.0 5.5 6 34 70 105 69 110 0.85 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF415-224 - 325 8.1e-18 64.3 55.2 4 11 0.0053 2.1 8.5 0.3 6 19 98 111 97 116 0.86 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF415-224 - 325 8.1e-18 64.3 55.2 5 11 2.5e-05 0.0098 16.0 4.1 6 34 126 161 125 161 0.92 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF415-224 - 325 8.1e-18 64.3 55.2 6 11 0.0012 0.49 10.6 0.3 6 19 154 167 153 174 0.84 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF415-224 - 325 8.1e-18 64.3 55.2 7 11 0.00013 0.051 13.7 4.3 6 34 182 217 181 218 0.86 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF415-224 - 325 8.1e-18 64.3 55.2 8 11 0.0024 0.93 9.7 0.3 6 18 210 222 208 230 0.86 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF415-224 - 325 8.1e-18 64.3 55.2 9 11 0.0016 0.63 10.2 0.1 6 20 238 252 237 260 0.85 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF415-224 - 325 8.1e-18 64.3 55.2 10 11 0.00015 0.058 13.5 3.2 6 34 266 301 265 301 0.86 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF415-224 - 325 8.1e-18 64.3 55.2 11 11 0.0027 1.1 9.5 0.2 6 17 294 305 293 314 0.88 Zinc ribbon domain zf_UBZ PF18439.1 32 ZNF415-224 - 325 5.3e-17 61.1 43.9 1 11 0.034 13 5.5 0.0 2 14 13 25 12 32 0.83 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF415-224 - 325 5.3e-17 61.1 43.9 2 11 0.17 68 3.2 0.9 3 14 42 53 40 57 0.86 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF415-224 - 325 5.3e-17 61.1 43.9 3 11 0.18 69 3.2 0.7 3 14 70 81 68 86 0.86 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF415-224 - 325 5.3e-17 61.1 43.9 4 11 0.0012 0.48 10.1 0.1 3 20 98 116 96 117 0.81 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF415-224 - 325 5.3e-17 61.1 43.9 5 11 0.00061 0.24 11.0 0.1 3 21 126 145 124 145 0.92 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF415-224 - 325 5.3e-17 61.1 43.9 6 11 0.0041 1.6 8.4 0.1 3 16 154 168 152 172 0.81 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF415-224 - 325 5.3e-17 61.1 43.9 7 11 0.0089 3.5 7.3 0.1 3 20 182 200 180 201 0.80 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF415-224 - 325 5.3e-17 61.1 43.9 8 11 0.00071 0.28 10.8 0.2 3 21 210 229 208 229 0.92 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF415-224 - 325 5.3e-17 61.1 43.9 9 11 0.0012 0.47 10.1 0.1 3 21 238 257 236 257 0.92 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF415-224 - 325 5.3e-17 61.1 43.9 10 11 0.0035 1.4 8.6 0.1 3 20 266 284 264 285 0.80 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF415-224 - 325 5.3e-17 61.1 43.9 11 11 0.0025 0.97 9.1 0.1 3 14 294 305 292 312 0.90 Ubiquitin-Binding Zinc Finger C1_1 PF00130.22 53 ZNF415-224 - 325 7.5e-13 48.1 45.2 1 10 0.076 30 4.6 0.1 27 38 12 23 4 30 0.57 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF415-224 - 325 7.5e-13 48.1 45.2 2 10 0.00032 0.13 12.2 3.9 2 47 32 89 31 95 0.88 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF415-224 - 325 7.5e-13 48.1 45.2 3 10 0.016 6.1 6.8 2.9 4 37 63 106 60 110 0.82 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF415-224 - 325 7.5e-13 48.1 45.2 4 10 0.003 1.2 9.1 2.1 9 37 95 134 87 138 0.86 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF415-224 - 325 7.5e-13 48.1 45.2 5 10 0.0018 0.69 9.8 2.3 3 37 118 162 116 163 0.81 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF415-224 - 325 7.5e-13 48.1 45.2 6 10 0.039 15 5.6 0.2 5 23 148 165 144 170 0.73 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF415-224 - 325 7.5e-13 48.1 45.2 7 10 5.2e-05 0.02 14.7 1.3 2 37 172 218 172 224 0.87 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF415-224 - 325 7.5e-13 48.1 45.2 8 10 0.0012 0.49 10.3 2.4 1 37 228 274 228 277 0.83 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF415-224 - 325 7.5e-13 48.1 45.2 9 10 6.8e-05 0.026 14.4 1.5 1 37 256 302 256 306 0.86 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF415-224 - 325 7.5e-13 48.1 45.2 10 10 0.0017 0.65 9.9 0.2 1 22 284 307 284 318 0.79 Phorbol esters/diacylglycerol binding domain (C1 domain) XPA_N PF01286.18 32 ZNF415-224 - 325 4.8e-09 36.1 38.1 1 11 0.2 79 3.4 0.0 3 12 15 24 14 35 0.84 XPA protein N-terminal XPA_N PF01286.18 32 ZNF415-224 - 325 4.8e-09 36.1 38.1 2 11 0.2 80 3.4 0.8 3 12 43 52 41 57 0.88 XPA protein N-terminal XPA_N PF01286.18 32 ZNF415-224 - 325 4.8e-09 36.1 38.1 3 11 0.39 1.5e+02 2.5 0.8 3 11 71 79 69 84 0.88 XPA protein N-terminal XPA_N PF01286.18 32 ZNF415-224 - 325 4.8e-09 36.1 38.1 4 11 0.009 3.5 7.7 0.0 3 12 99 108 97 116 0.86 XPA protein N-terminal XPA_N PF01286.18 32 ZNF415-224 - 325 4.8e-09 36.1 38.1 5 11 0.033 13 6.0 0.1 3 13 127 137 125 144 0.84 XPA protein N-terminal XPA_N PF01286.18 32 ZNF415-224 - 325 4.8e-09 36.1 38.1 6 11 0.033 13 6.0 0.0 3 13 155 165 153 173 0.85 XPA protein N-terminal XPA_N PF01286.18 32 ZNF415-224 - 325 4.8e-09 36.1 38.1 7 11 0.067 26 5.0 0.1 3 11 183 191 181 199 0.88 XPA protein N-terminal XPA_N PF01286.18 32 ZNF415-224 - 325 4.8e-09 36.1 38.1 8 11 0.016 6.1 7.0 0.1 3 12 211 220 209 227 0.90 XPA protein N-terminal XPA_N PF01286.18 32 ZNF415-224 - 325 4.8e-09 36.1 38.1 9 11 0.12 47 4.1 0.0 3 12 239 248 237 255 0.89 XPA protein N-terminal XPA_N PF01286.18 32 ZNF415-224 - 325 4.8e-09 36.1 38.1 10 11 0.024 9.5 6.4 0.1 3 12 267 276 265 277 0.88 XPA protein N-terminal XPA_N PF01286.18 32 ZNF415-224 - 325 4.8e-09 36.1 38.1 11 11 0.094 37 4.5 0.1 3 12 295 304 293 305 0.88 XPA protein N-terminal zf-C2H2_jaz PF12171.8 27 ZNF415-224 - 325 2e-08 34.3 47.0 1 11 0.0053 2.1 8.8 0.1 2 21 14 33 13 34 0.90 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF415-224 - 325 2e-08 34.3 47.0 2 11 0.028 11 6.4 0.4 2 14 42 54 41 62 0.84 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF415-224 - 325 2e-08 34.3 47.0 3 11 0.0043 1.7 9.0 2.3 2 24 70 92 69 93 0.88 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF415-224 - 325 2e-08 34.3 47.0 4 11 0.008 3.1 8.2 0.0 2 21 98 117 97 118 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF415-224 - 325 2e-08 34.3 47.0 5 11 0.049 19 5.7 0.1 2 21 126 145 125 146 0.88 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF415-224 - 325 2e-08 34.3 47.0 6 11 0.079 31 5.0 0.1 2 21 154 173 153 174 0.85 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF415-224 - 325 2e-08 34.3 47.0 7 11 0.23 91 3.5 0.3 2 20 182 200 181 202 0.75 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF415-224 - 325 2e-08 34.3 47.0 8 11 0.054 21 5.5 0.2 2 21 210 229 209 230 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF415-224 - 325 2e-08 34.3 47.0 9 11 0.046 18 5.8 0.1 2 21 238 257 237 258 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF415-224 - 325 2e-08 34.3 47.0 10 11 0.46 1.8e+02 2.6 0.2 2 12 266 276 265 276 0.89 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF415-224 - 325 2e-08 34.3 47.0 11 11 1.2 4.8e+02 1.2 0.2 2 12 294 304 293 304 0.89 Zinc-finger double-stranded RNA-binding C1_4 PF07975.12 55 ZNF415-224 - 325 1.9e-07 31.2 49.1 1 11 0.98 3.8e+02 1.4 0.1 23 35 11 23 3 38 0.79 TFIIH C1-like domain C1_4 PF07975.12 55 ZNF415-224 - 325 1.9e-07 31.2 49.1 2 11 0.33 1.3e+02 2.9 4.2 2 44 16 60 15 67 0.67 TFIIH C1-like domain C1_4 PF07975.12 55 ZNF415-224 - 325 1.9e-07 31.2 49.1 3 11 9.3 3.6e+03 -1.7 8.1 2 36 44 80 43 95 0.69 TFIIH C1-like domain C1_4 PF07975.12 55 ZNF415-224 - 325 1.9e-07 31.2 49.1 4 11 0.01 4 7.7 4.8 1 49 71 121 71 123 0.81 TFIIH C1-like domain C1_4 PF07975.12 55 ZNF415-224 - 325 1.9e-07 31.2 49.1 5 11 0.007 2.7 8.3 2.4 2 48 100 148 99 151 0.74 TFIIH C1-like domain C1_4 PF07975.12 55 ZNF415-224 - 325 1.9e-07 31.2 49.1 6 11 0.025 9.8 6.5 2.2 1 35 127 163 127 178 0.84 TFIIH C1-like domain C1_4 PF07975.12 55 ZNF415-224 - 325 1.9e-07 31.2 49.1 7 11 0.068 27 5.1 2.9 2 48 156 204 155 207 0.75 TFIIH C1-like domain C1_4 PF07975.12 55 ZNF415-224 - 325 1.9e-07 31.2 49.1 8 11 0.0044 1.7 8.9 3.5 2 49 184 233 183 236 0.79 TFIIH C1-like domain C1_4 PF07975.12 55 ZNF415-224 - 325 1.9e-07 31.2 49.1 9 11 0.00089 0.35 11.2 2.4 1 49 211 261 211 263 0.87 TFIIH C1-like domain C1_4 PF07975.12 55 ZNF415-224 - 325 1.9e-07 31.2 49.1 10 11 0.0012 0.45 10.8 0.8 2 49 240 289 239 291 0.82 TFIIH C1-like domain C1_4 PF07975.12 55 ZNF415-224 - 325 1.9e-07 31.2 49.1 11 11 2.5e-05 0.0097 16.1 0.7 1 49 267 317 267 318 0.88 TFIIH C1-like domain # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF415-224.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF415-224.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF415-224.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF415-224.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF415-224.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:05:48 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF415-225.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF415-225.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF415-225.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF415-225.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF415-225.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:05:48 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF415-226.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF415-226.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF415-226.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF415-226.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF415-226.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:05:49 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZNF416-201 - 594 6.8e-83 269.7 74.6 1 14 3.3 3.3e+03 -1.2 0.1 7 16 141 150 136 161 0.72 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF416-201 - 594 6.8e-83 269.7 74.6 2 14 1.1 1.1e+03 0.3 4.5 5 23 228 250 226 251 0.77 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF416-201 - 594 6.8e-83 269.7 74.6 3 14 7.2e-09 7.1e-06 26.2 0.3 7 25 262 280 261 281 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF416-201 - 594 6.8e-83 269.7 74.6 4 14 3.6e-10 3.6e-07 30.3 0.3 1 25 284 308 284 309 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF416-201 - 594 6.8e-83 269.7 74.6 5 14 6.2e-10 6.2e-07 29.6 0.9 2 25 313 336 312 337 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF416-201 - 594 6.8e-83 269.7 74.6 6 14 1e-11 1e-08 35.2 0.2 1 25 340 364 340 365 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF416-201 - 594 6.8e-83 269.7 74.6 7 14 3.6e-11 3.6e-08 33.5 0.5 2 24 369 391 368 393 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF416-201 - 594 6.8e-83 269.7 74.6 8 14 1.7e-07 0.00017 21.8 0.1 2 25 397 420 396 420 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF416-201 - 594 6.8e-83 269.7 74.6 9 14 1.1e-07 0.00011 22.5 0.0 2 25 425 448 424 449 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF416-201 - 594 6.8e-83 269.7 74.6 10 14 1.2e-07 0.00012 22.4 1.2 2 24 453 475 452 475 0.98 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF416-201 - 594 6.8e-83 269.7 74.6 11 14 7.2e-12 7.2e-09 35.7 1.2 2 25 481 504 480 505 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF416-201 - 594 6.8e-83 269.7 74.6 12 14 2.7e-07 0.00027 21.2 0.1 2 24 509 531 508 533 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF416-201 - 594 6.8e-83 269.7 74.6 13 14 1.4e-09 1.3e-06 28.5 0.1 2 25 537 560 536 561 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF416-201 - 594 6.8e-83 269.7 74.6 14 14 0.0065 6.4 7.4 0.1 2 22 565 585 564 587 0.86 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZNF416-201 - 594 3.7e-64 209.8 78.0 1 12 6.7e-09 6.7e-06 26.3 2.1 1 23 270 292 270 292 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF416-201 - 594 3.7e-64 209.8 78.0 2 12 1.6e-08 1.6e-05 25.1 1.3 1 23 298 320 298 320 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF416-201 - 594 3.7e-64 209.8 78.0 3 12 4.3e-08 4.3e-05 23.7 0.8 1 23 326 348 326 348 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF416-201 - 594 3.7e-64 209.8 78.0 4 12 2.9e-09 2.9e-06 27.4 0.3 1 23 354 376 354 376 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF416-201 - 594 3.7e-64 209.8 78.0 5 12 1e-07 0.0001 22.5 0.2 1 23 382 404 382 404 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF416-201 - 594 3.7e-64 209.8 78.0 6 12 3.6e-06 0.0036 17.7 0.6 1 23 410 432 410 432 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF416-201 - 594 3.7e-64 209.8 78.0 7 12 9.2e-08 9.2e-05 22.7 2.7 1 23 438 460 438 460 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF416-201 - 594 3.7e-64 209.8 78.0 8 12 1.6e-08 1.6e-05 25.1 0.7 1 23 466 488 466 488 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF416-201 - 594 3.7e-64 209.8 78.0 9 12 1.2e-07 0.00012 22.3 0.8 1 23 494 516 494 516 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF416-201 - 594 3.7e-64 209.8 78.0 10 12 1.3e-07 0.00013 22.3 0.1 1 23 522 544 522 544 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF416-201 - 594 3.7e-64 209.8 78.0 11 12 1.1e-07 0.00011 22.5 1.6 1 23 550 572 550 572 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF416-201 - 594 3.7e-64 209.8 78.0 12 12 0.8 8e+02 0.8 0.0 5 15 582 592 581 594 0.85 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZNF416-201 - 594 6.8e-33 110.5 90.6 1 11 5.3e-06 0.0053 17.5 1.5 1 23 270 292 270 293 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF416-201 - 594 6.8e-33 110.5 90.6 2 11 1.4e-05 0.014 16.2 1.1 1 23 298 320 298 321 0.91 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF416-201 - 594 6.8e-33 110.5 90.6 3 11 1.9e-05 0.019 15.7 1.0 1 23 326 348 326 349 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF416-201 - 594 6.8e-33 110.5 90.6 4 11 6e-07 0.00059 20.4 0.3 1 23 354 376 354 377 0.97 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF416-201 - 594 6.8e-33 110.5 90.6 5 11 0.00028 0.28 12.1 0.4 1 23 382 404 382 405 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF416-201 - 594 6.8e-33 110.5 90.6 6 11 1.1e-05 0.011 16.6 0.9 1 23 410 432 410 433 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF416-201 - 594 6.8e-33 110.5 90.6 7 11 6.4e-06 0.0063 17.2 2.1 1 23 438 460 438 461 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF416-201 - 594 6.8e-33 110.5 90.6 8 11 2.2e-05 0.022 15.5 0.7 1 23 466 488 466 489 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF416-201 - 594 6.8e-33 110.5 90.6 9 11 0.00012 0.12 13.3 1.0 1 23 494 516 494 517 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF416-201 - 594 6.8e-33 110.5 90.6 10 11 0.00015 0.15 12.9 0.2 3 23 524 544 522 545 0.91 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF416-201 - 594 6.8e-33 110.5 90.6 11 11 6.1e-05 0.061 14.2 1.3 1 23 550 572 550 573 0.94 C2H2-type zinc finger KRAB PF01352.27 42 ZNF416-201 - 594 2.9e-22 78.0 0.2 1 1 5.3e-25 5.3e-22 77.2 0.2 1 40 27 66 27 67 0.94 KRAB box zf-C2H2_6 PF13912.6 27 ZNF416-201 - 594 2.6e-14 52.8 76.2 1 11 2.2e-05 0.022 14.7 1.4 2 24 270 292 270 295 0.88 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF416-201 - 594 2.6e-14 52.8 76.2 2 11 0.0094 9.4 6.4 0.7 2 12 298 308 298 321 0.80 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF416-201 - 594 2.6e-14 52.8 76.2 3 11 0.00055 0.55 10.3 1.9 2 20 326 344 326 350 0.90 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF416-201 - 594 2.6e-14 52.8 76.2 4 11 3.3e-05 0.033 14.2 0.6 2 24 354 376 354 379 0.84 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF416-201 - 594 2.6e-14 52.8 76.2 5 11 0.012 12 6.0 0.3 2 12 382 392 382 394 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF416-201 - 594 2.6e-14 52.8 76.2 6 11 0.0055 5.5 7.1 0.6 2 12 410 420 410 420 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF416-201 - 594 2.6e-14 52.8 76.2 7 11 1.3e-05 0.013 15.5 2.1 2 24 438 460 438 463 0.90 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF416-201 - 594 2.6e-14 52.8 76.2 8 11 0.096 95 3.2 0.1 2 11 466 475 466 476 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF416-201 - 594 2.6e-14 52.8 76.2 9 11 0.0022 2.2 8.4 1.5 2 22 494 514 494 517 0.82 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF416-201 - 594 2.6e-14 52.8 76.2 10 11 0.093 93 3.2 0.2 2 11 522 531 522 540 0.90 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF416-201 - 594 2.6e-14 52.8 76.2 11 11 0.0014 1.4 9.0 3.8 2 24 550 572 550 573 0.98 C2H2-type zinc finger zf_UBZ PF18439.1 32 ZNF416-201 - 594 3.7e-11 42.4 47.9 1 12 0.00074 0.74 9.5 0.2 3 15 270 282 268 289 0.83 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF416-201 - 594 3.7e-11 42.4 47.9 2 12 0.0042 4.2 7.0 0.1 3 14 298 309 296 316 0.87 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF416-201 - 594 3.7e-11 42.4 47.9 3 12 0.00091 0.91 9.2 0.8 3 20 326 344 324 345 0.93 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF416-201 - 594 3.7e-11 42.4 47.9 4 12 0.015 15 5.3 0.1 3 12 354 363 352 369 0.88 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF416-201 - 594 3.7e-11 42.4 47.9 5 12 0.059 59 3.4 0.1 3 13 382 392 380 401 0.80 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF416-201 - 594 3.7e-11 42.4 47.9 6 12 0.015 15 5.3 0.4 3 15 410 422 408 429 0.78 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF416-201 - 594 3.7e-11 42.4 47.9 7 12 0.002 2 8.1 0.3 3 15 438 450 436 457 0.80 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF416-201 - 594 3.7e-11 42.4 47.9 8 12 0.035 35 4.1 0.1 3 12 466 475 464 481 0.88 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF416-201 - 594 3.7e-11 42.4 47.9 9 12 0.0011 1.1 8.9 0.2 3 21 494 513 492 513 0.93 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF416-201 - 594 3.7e-11 42.4 47.9 10 12 0.012 12 5.6 0.1 3 20 522 540 520 541 0.81 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF416-201 - 594 3.7e-11 42.4 47.9 11 12 0.02 20 4.9 0.1 3 15 550 562 548 564 0.86 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF416-201 - 594 3.7e-11 42.4 47.9 12 12 7.6 7.6e+03 -3.4 0.0 6 12 581 587 581 589 0.77 Ubiquitin-Binding Zinc Finger XPA_N PF01286.18 32 ZNF416-201 - 594 4.4e-07 29.8 46.2 1 11 0.011 11 6.2 0.3 3 13 271 281 269 288 0.83 XPA protein N-terminal XPA_N PF01286.18 32 ZNF416-201 - 594 4.4e-07 29.8 46.2 2 11 0.29 2.9e+02 1.6 0.1 3 12 299 308 297 310 0.87 XPA protein N-terminal XPA_N PF01286.18 32 ZNF416-201 - 594 4.4e-07 29.8 46.2 3 11 0.009 9 6.4 0.4 3 14 327 338 325 341 0.92 XPA protein N-terminal XPA_N PF01286.18 32 ZNF416-201 - 594 4.4e-07 29.8 46.2 4 11 0.0024 2.4 8.3 0.1 3 12 355 364 353 372 0.85 XPA protein N-terminal XPA_N PF01286.18 32 ZNF416-201 - 594 4.4e-07 29.8 46.2 5 11 0.0073 7.3 6.7 0.2 3 15 383 395 381 397 0.92 XPA protein N-terminal XPA_N PF01286.18 32 ZNF416-201 - 594 4.4e-07 29.8 46.2 6 11 0.31 3.1e+02 1.5 0.1 3 11 411 419 409 421 0.88 XPA protein N-terminal XPA_N PF01286.18 32 ZNF416-201 - 594 4.4e-07 29.8 46.2 7 11 0.0071 7 6.8 0.8 3 12 439 448 437 450 0.89 XPA protein N-terminal XPA_N PF01286.18 32 ZNF416-201 - 594 4.4e-07 29.8 46.2 8 11 0.017 17 5.5 0.0 3 12 467 476 465 484 0.78 XPA protein N-terminal XPA_N PF01286.18 32 ZNF416-201 - 594 4.4e-07 29.8 46.2 9 11 0.0035 3.5 7.8 0.3 3 15 495 507 493 511 0.93 XPA protein N-terminal XPA_N PF01286.18 32 ZNF416-201 - 594 4.4e-07 29.8 46.2 10 11 0.26 2.5e+02 1.8 0.1 3 12 523 532 521 540 0.83 XPA protein N-terminal XPA_N PF01286.18 32 ZNF416-201 - 594 4.4e-07 29.8 46.2 11 11 0.12 1.2e+02 2.8 0.2 3 12 551 560 549 562 0.88 XPA protein N-terminal # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF416-201.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF416-201.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF416-201.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF416-201.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF416-201.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:05:49 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZNF417-201 - 575 3.4e-78 254.8 94.8 1 16 2 3.3e+03 -1.2 0.3 11 21 88 98 85 98 0.81 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF417-201 - 575 3.4e-78 254.8 94.8 2 16 2.8 4.6e+03 -1.6 0.8 4 13 109 118 106 127 0.79 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF417-201 - 575 3.4e-78 254.8 94.8 3 16 0.11 1.8e+02 2.8 1.2 4 15 137 148 134 149 0.87 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF417-201 - 575 3.4e-78 254.8 94.8 4 16 1.3 2.1e+03 -0.6 0.2 11 26 208 223 201 223 0.81 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF417-201 - 575 3.4e-78 254.8 94.8 5 16 0.0092 15 6.2 0.8 15 25 240 250 224 251 0.81 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF417-201 - 575 3.4e-78 254.8 94.8 6 16 6.3e-07 0.001 19.4 0.3 2 25 255 278 254 279 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF417-201 - 575 3.4e-78 254.8 94.8 7 16 8.1e-10 1.3e-06 28.5 0.1 2 25 283 306 282 307 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF417-201 - 575 3.4e-78 254.8 94.8 8 16 4.2e-09 6.8e-06 26.3 0.0 2 25 311 334 310 335 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF417-201 - 575 3.4e-78 254.8 94.8 9 16 1.2e-07 0.00019 21.7 0.2 1 25 338 362 338 363 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF417-201 - 575 3.4e-78 254.8 94.8 10 16 3.1e-10 5.1e-07 29.8 0.4 4 25 369 390 367 391 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF417-201 - 575 3.4e-78 254.8 94.8 11 16 7.1e-12 1.2e-08 35.0 0.6 1 25 394 418 394 419 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF417-201 - 575 3.4e-78 254.8 94.8 12 16 9.8e-10 1.6e-06 28.3 1.6 1 25 422 446 422 447 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF417-201 - 575 3.4e-78 254.8 94.8 13 16 8.6e-10 1.4e-06 28.4 0.2 2 26 451 475 450 475 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF417-201 - 575 3.4e-78 254.8 94.8 14 16 2.6e-10 4.2e-07 30.1 0.2 5 25 482 502 480 503 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF417-201 - 575 3.4e-78 254.8 94.8 15 16 7.3e-10 1.2e-06 28.7 1.4 5 25 510 530 506 531 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF417-201 - 575 3.4e-78 254.8 94.8 16 16 3.2e-11 5.3e-08 33.0 1.0 2 24 535 557 534 559 0.94 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZNF417-201 - 575 6.2e-61 199.6 109.1 1 15 0.015 25 5.6 1.5 1 23 92 114 92 115 0.94 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF417-201 - 575 6.2e-61 199.6 109.1 2 15 0.052 85 3.9 0.1 6 23 125 142 123 142 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF417-201 - 575 6.2e-61 199.6 109.1 3 15 1.3 2.2e+03 -0.5 0.1 6 19 214 230 212 233 0.69 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF417-201 - 575 6.2e-61 199.6 109.1 4 15 4.8e-08 7.9e-05 22.9 1.6 1 23 240 262 240 262 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF417-201 - 575 6.2e-61 199.6 109.1 5 15 2e-09 3.3e-06 27.2 0.5 1 23 268 290 268 290 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF417-201 - 575 6.2e-61 199.6 109.1 6 15 9.8e-10 1.6e-06 28.2 0.2 1 23 296 318 296 318 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF417-201 - 575 6.2e-61 199.6 109.1 7 15 0.0018 3 8.5 0.0 7 23 330 346 324 346 0.88 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF417-201 - 575 6.2e-61 199.6 109.1 8 15 1.6e-06 0.0026 18.1 5.4 1 23 352 374 352 374 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF417-201 - 575 6.2e-61 199.6 109.1 9 15 3.2e-09 5.2e-06 26.6 0.1 1 23 380 402 380 402 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF417-201 - 575 6.2e-61 199.6 109.1 10 15 3.4e-09 5.5e-06 26.5 3.5 1 23 408 430 408 430 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF417-201 - 575 6.2e-61 199.6 109.1 11 15 2.9e-07 0.00047 20.5 2.2 1 23 436 458 436 458 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF417-201 - 575 6.2e-61 199.6 109.1 12 15 8.7e-05 0.14 12.7 0.5 1 23 464 486 464 486 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF417-201 - 575 6.2e-61 199.6 109.1 13 15 7.7e-07 0.0013 19.1 1.1 1 23 492 514 492 514 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF417-201 - 575 6.2e-61 199.6 109.1 14 15 2.6e-08 4.2e-05 23.8 2.0 1 23 520 542 520 542 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF417-201 - 575 6.2e-61 199.6 109.1 15 15 2.1e-07 0.00035 20.9 3.8 1 23 548 570 548 570 0.98 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZNF417-201 - 575 7.1e-36 119.8 106.7 1 15 0.0017 2.7 9.0 1.9 1 24 92 115 92 115 0.97 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF417-201 - 575 7.1e-36 119.8 106.7 2 15 0.11 1.8e+02 3.4 0.1 6 23 125 142 123 143 0.91 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF417-201 - 575 7.1e-36 119.8 106.7 3 15 5.1 8.3e+03 -1.8 0.1 7 20 218 231 212 233 0.73 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF417-201 - 575 7.1e-36 119.8 106.7 4 15 2.6e-06 0.0043 17.8 1.1 1 23 240 262 240 263 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF417-201 - 575 7.1e-36 119.8 106.7 5 15 1.6e-05 0.025 15.4 0.4 3 23 270 290 268 291 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF417-201 - 575 7.1e-36 119.8 106.7 6 15 1e-06 0.0016 19.1 0.3 1 23 296 318 296 319 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF417-201 - 575 7.1e-36 119.8 106.7 7 15 0.32 5.1e+02 2.0 0.0 7 23 330 346 324 347 0.82 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF417-201 - 575 7.1e-36 119.8 106.7 8 15 0.00072 1.2 10.2 4.6 1 23 352 374 352 375 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF417-201 - 575 7.1e-36 119.8 106.7 9 15 1.3e-05 0.021 15.6 0.2 1 23 380 402 380 403 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF417-201 - 575 7.1e-36 119.8 106.7 10 15 3.9e-05 0.064 14.1 2.7 1 23 408 430 408 431 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF417-201 - 575 7.1e-36 119.8 106.7 11 15 2e-05 0.032 15.1 1.7 1 23 436 458 436 459 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF417-201 - 575 7.1e-36 119.8 106.7 12 15 0.00055 0.89 10.6 0.5 1 23 464 486 464 487 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF417-201 - 575 7.1e-36 119.8 106.7 13 15 3.1e-06 0.0051 17.5 1.5 1 23 492 514 492 515 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF417-201 - 575 7.1e-36 119.8 106.7 14 15 1.5e-06 0.0024 18.6 2.1 1 23 520 542 520 543 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF417-201 - 575 7.1e-36 119.8 106.7 15 15 6.6e-06 0.011 16.5 3.2 1 23 548 570 548 571 0.95 C2H2-type zinc finger KRAB PF01352.27 42 ZNF417-201 - 575 9.3e-23 79.6 0.2 1 1 1.1e-25 1.8e-22 78.7 0.2 2 42 15 55 14 55 0.98 KRAB box zf-C2H2_6 PF13912.6 27 ZNF417-201 - 575 4.4e-16 58.4 88.9 1 12 5.9 9.6e+03 -3.2 0.1 1 8 91 98 91 98 0.85 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF417-201 - 575 4.4e-16 58.4 88.9 2 12 0.00042 0.69 10.0 3.1 2 24 240 262 239 265 0.85 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF417-201 - 575 4.4e-16 58.4 88.9 3 12 0.0053 8.7 6.5 1.1 2 24 268 290 268 293 0.87 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF417-201 - 575 4.4e-16 58.4 88.9 4 12 0.00012 0.19 11.8 0.4 1 24 295 318 295 321 0.85 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF417-201 - 575 4.4e-16 58.4 88.9 5 12 0.0071 12 6.1 0.4 1 12 351 362 351 363 0.89 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF417-201 - 575 4.4e-16 58.4 88.9 6 12 0.0021 3.4 7.8 0.3 2 12 380 390 380 402 0.89 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF417-201 - 575 4.4e-16 58.4 88.9 7 12 2.2e-05 0.035 14.1 2.9 2 22 408 428 408 432 0.86 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF417-201 - 575 4.4e-16 58.4 88.9 8 12 0.0029 4.7 7.3 0.5 2 13 436 447 436 458 0.87 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF417-201 - 575 4.4e-16 58.4 88.9 9 12 0.021 34 4.6 0.2 2 11 464 473 464 474 0.90 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF417-201 - 575 4.4e-16 58.4 88.9 10 12 8.7e-06 0.014 15.4 2.4 2 25 492 515 492 517 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF417-201 - 575 4.4e-16 58.4 88.9 11 12 2.5e-06 0.0041 17.1 2.3 2 24 520 542 520 545 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF417-201 - 575 4.4e-16 58.4 88.9 12 12 0.0005 0.82 9.7 5.6 2 26 548 572 548 573 0.94 C2H2-type zinc finger # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF417-201.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF417-201.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF417-201.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF417-201.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF417-201.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:05:49 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF417-202.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF417-202.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF417-202.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF417-202.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF417-202.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:05:50 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZNF417-203 - 574 3.3e-78 254.9 94.8 1 16 2 3.3e+03 -1.2 0.3 11 21 87 97 84 97 0.81 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF417-203 - 574 3.3e-78 254.9 94.8 2 16 2.8 4.6e+03 -1.6 0.8 4 13 108 117 105 126 0.79 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF417-203 - 574 3.3e-78 254.9 94.8 3 16 0.11 1.8e+02 2.8 1.2 4 15 136 147 133 148 0.87 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF417-203 - 574 3.3e-78 254.9 94.8 4 16 1.3 2.1e+03 -0.6 0.2 11 26 207 222 200 222 0.81 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF417-203 - 574 3.3e-78 254.9 94.8 5 16 0.0092 15 6.2 0.8 15 25 239 249 223 250 0.81 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF417-203 - 574 3.3e-78 254.9 94.8 6 16 6.2e-07 0.001 19.4 0.3 2 25 254 277 253 278 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF417-203 - 574 3.3e-78 254.9 94.8 7 16 8.1e-10 1.3e-06 28.5 0.1 2 25 282 305 281 306 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF417-203 - 574 3.3e-78 254.9 94.8 8 16 4.1e-09 6.8e-06 26.3 0.0 2 25 310 333 309 334 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF417-203 - 574 3.3e-78 254.9 94.8 9 16 1.2e-07 0.00019 21.7 0.2 1 25 337 361 337 362 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF417-203 - 574 3.3e-78 254.9 94.8 10 16 3.1e-10 5.1e-07 29.8 0.4 4 25 368 389 366 390 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF417-203 - 574 3.3e-78 254.9 94.8 11 16 7.1e-12 1.2e-08 35.0 0.6 1 25 393 417 393 418 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF417-203 - 574 3.3e-78 254.9 94.8 12 16 9.8e-10 1.6e-06 28.3 1.6 1 25 421 445 421 446 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF417-203 - 574 3.3e-78 254.9 94.8 13 16 8.6e-10 1.4e-06 28.4 0.2 2 26 450 474 449 474 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF417-203 - 574 3.3e-78 254.9 94.8 14 16 2.6e-10 4.2e-07 30.1 0.2 5 25 481 501 479 502 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF417-203 - 574 3.3e-78 254.9 94.8 15 16 7.3e-10 1.2e-06 28.7 1.4 5 25 509 529 505 530 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF417-203 - 574 3.3e-78 254.9 94.8 16 16 3.2e-11 5.2e-08 33.0 1.0 2 24 534 556 533 558 0.94 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZNF417-203 - 574 6e-61 199.6 109.1 1 15 0.015 25 5.6 1.5 1 23 91 113 91 114 0.94 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF417-203 - 574 6e-61 199.6 109.1 2 15 0.052 85 3.9 0.1 6 23 124 141 122 141 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF417-203 - 574 6e-61 199.6 109.1 3 15 1.3 2.2e+03 -0.5 0.1 6 19 213 229 211 232 0.69 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF417-203 - 574 6e-61 199.6 109.1 4 15 4.8e-08 7.9e-05 22.9 1.6 1 23 239 261 239 261 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF417-203 - 574 6e-61 199.6 109.1 5 15 2e-09 3.3e-06 27.2 0.5 1 23 267 289 267 289 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF417-203 - 574 6e-61 199.6 109.1 6 15 9.7e-10 1.6e-06 28.2 0.2 1 23 295 317 295 317 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF417-203 - 574 6e-61 199.6 109.1 7 15 0.0018 3 8.5 0.0 7 23 329 345 323 345 0.88 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF417-203 - 574 6e-61 199.6 109.1 8 15 1.6e-06 0.0026 18.1 5.4 1 23 351 373 351 373 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF417-203 - 574 6e-61 199.6 109.1 9 15 3.2e-09 5.2e-06 26.6 0.1 1 23 379 401 379 401 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF417-203 - 574 6e-61 199.6 109.1 10 15 3.4e-09 5.5e-06 26.5 3.5 1 23 407 429 407 429 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF417-203 - 574 6e-61 199.6 109.1 11 15 2.9e-07 0.00047 20.5 2.2 1 23 435 457 435 457 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF417-203 - 574 6e-61 199.6 109.1 12 15 8.7e-05 0.14 12.7 0.5 1 23 463 485 463 485 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF417-203 - 574 6e-61 199.6 109.1 13 15 7.7e-07 0.0013 19.1 1.1 1 23 491 513 491 513 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF417-203 - 574 6e-61 199.6 109.1 14 15 2.5e-08 4.1e-05 23.8 2.0 1 23 519 541 519 541 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF417-203 - 574 6e-61 199.6 109.1 15 15 2.1e-07 0.00035 20.9 3.8 1 23 547 569 547 569 0.98 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZNF417-203 - 574 6.8e-36 119.8 106.7 1 15 0.0017 2.7 9.1 1.9 1 24 91 114 91 114 0.97 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF417-203 - 574 6.8e-36 119.8 106.7 2 15 0.11 1.8e+02 3.4 0.1 6 23 124 141 122 142 0.91 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF417-203 - 574 6.8e-36 119.8 106.7 3 15 5.1 8.3e+03 -1.8 0.1 7 20 217 230 211 232 0.73 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF417-203 - 574 6.8e-36 119.8 106.7 4 15 2.6e-06 0.0042 17.8 1.1 1 23 239 261 239 262 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF417-203 - 574 6.8e-36 119.8 106.7 5 15 1.6e-05 0.025 15.4 0.4 3 23 269 289 267 290 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF417-203 - 574 6.8e-36 119.8 106.7 6 15 1e-06 0.0016 19.1 0.3 1 23 295 317 295 318 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF417-203 - 574 6.8e-36 119.8 106.7 7 15 0.32 5.1e+02 2.0 0.0 7 23 329 345 323 346 0.82 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF417-203 - 574 6.8e-36 119.8 106.7 8 15 0.00072 1.2 10.2 4.6 1 23 351 373 351 374 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF417-203 - 574 6.8e-36 119.8 106.7 9 15 1.3e-05 0.021 15.6 0.2 1 23 379 401 379 402 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF417-203 - 574 6.8e-36 119.8 106.7 10 15 3.9e-05 0.064 14.1 2.7 1 23 407 429 407 430 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF417-203 - 574 6.8e-36 119.8 106.7 11 15 2e-05 0.032 15.1 1.7 1 23 435 457 435 458 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF417-203 - 574 6.8e-36 119.8 106.7 12 15 0.00055 0.89 10.6 0.5 1 23 463 485 463 486 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF417-203 - 574 6.8e-36 119.8 106.7 13 15 3.1e-06 0.0051 17.6 1.5 1 23 491 513 491 514 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF417-203 - 574 6.8e-36 119.8 106.7 14 15 1.5e-06 0.0024 18.6 2.1 1 23 519 541 519 542 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF417-203 - 574 6.8e-36 119.8 106.7 15 15 6.6e-06 0.011 16.5 3.2 1 23 547 569 547 570 0.95 C2H2-type zinc finger KRAB PF01352.27 42 ZNF417-203 - 574 9.3e-23 79.6 0.2 1 1 1.1e-25 1.8e-22 78.7 0.2 2 42 14 54 13 54 0.98 KRAB box zf-C2H2_6 PF13912.6 27 ZNF417-203 - 574 4.3e-16 58.5 88.9 1 12 5.9 9.6e+03 -3.2 0.1 1 8 90 97 90 97 0.85 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF417-203 - 574 4.3e-16 58.5 88.9 2 12 0.00042 0.68 10.0 3.1 2 24 239 261 238 264 0.85 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF417-203 - 574 4.3e-16 58.5 88.9 3 12 0.0053 8.7 6.5 1.1 2 24 267 289 267 292 0.87 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF417-203 - 574 4.3e-16 58.5 88.9 4 12 0.00012 0.19 11.8 0.4 1 24 294 317 294 320 0.85 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF417-203 - 574 4.3e-16 58.5 88.9 5 12 0.0071 12 6.1 0.4 1 12 350 361 350 362 0.89 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF417-203 - 574 4.3e-16 58.5 88.9 6 12 0.0021 3.4 7.8 0.3 2 12 379 389 379 401 0.89 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF417-203 - 574 4.3e-16 58.5 88.9 7 12 2.2e-05 0.035 14.1 2.9 2 22 407 427 407 431 0.86 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF417-203 - 574 4.3e-16 58.5 88.9 8 12 0.0029 4.7 7.3 0.5 2 13 435 446 435 457 0.87 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF417-203 - 574 4.3e-16 58.5 88.9 9 12 0.021 33 4.6 0.2 2 11 463 472 463 473 0.90 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF417-203 - 574 4.3e-16 58.5 88.9 10 12 8.7e-06 0.014 15.4 2.4 2 25 491 514 491 516 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF417-203 - 574 4.3e-16 58.5 88.9 11 12 2.5e-06 0.0041 17.1 2.3 2 24 519 541 519 544 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF417-203 - 574 4.3e-16 58.5 88.9 12 12 0.0005 0.82 9.7 5.6 2 26 547 571 547 572 0.94 C2H2-type zinc finger Zn-ribbon_8 PF09723.10 40 ZNF417-203 - 574 1e-06 28.8 72.6 1 12 0.25 4e+02 1.2 0.2 8 27 93 112 89 116 0.76 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF417-203 - 574 1e-06 28.8 72.6 2 12 5.3e-05 0.087 13.0 2.8 6 38 239 278 238 280 0.75 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF417-203 - 574 1e-06 28.8 72.6 3 12 0.0039 6.3 7.0 4.5 6 35 267 303 266 307 0.84 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF417-203 - 574 1e-06 28.8 72.6 4 12 0.014 23 5.2 1.6 6 17 295 312 294 329 0.70 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF417-203 - 574 1e-06 28.8 72.6 5 12 0.0087 14 5.9 7.9 6 34 351 386 350 388 0.89 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF417-203 - 574 1e-06 28.8 72.6 6 12 0.00087 1.4 9.1 5.8 6 35 379 415 378 418 0.88 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF417-203 - 574 1e-06 28.8 72.6 7 12 7.7e-05 0.13 12.5 4.8 6 38 407 446 406 448 0.89 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF417-203 - 574 1e-06 28.8 72.6 8 12 0.00048 0.78 9.9 1.7 6 34 435 470 434 475 0.87 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF417-203 - 574 1e-06 28.8 72.6 9 12 0.0051 8.4 6.6 5.0 6 34 463 498 462 502 0.90 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF417-203 - 574 1e-06 28.8 72.6 10 12 0.0076 12 6.1 0.7 6 15 491 500 490 510 0.89 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF417-203 - 574 1e-06 28.8 72.6 11 12 0.00021 0.34 11.0 7.1 6 38 519 558 518 560 0.91 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF417-203 - 574 1e-06 28.8 72.6 12 12 0.0011 1.8 8.7 0.5 6 17 547 558 546 571 0.82 Zinc ribbon domain # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF417-203.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF417-203.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF417-203.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF417-203.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF417-203.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:05:50 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF417-204.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF417-204.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF417-204.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF417-204.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF417-204.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:05:51 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF417-205.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF417-205.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF417-205.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF417-205.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF417-205.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:05:51 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF417-206.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF417-206.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF417-206.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF417-206.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF417-206.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:05:51 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF417-207.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF417-207.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF417-207.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF417-207.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF417-207.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:05:52 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZNF418-201 - 676 1.4e-118 382.6 150.8 1 18 6.5 6.4e+03 -2.1 0.2 11 21 78 88 77 89 0.80 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF418-201 - 676 1.4e-118 382.6 150.8 2 18 0.012 12 6.6 2.6 1 18 96 113 96 114 0.90 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF418-201 - 676 1.4e-118 382.6 150.8 3 18 2.4e-10 2.4e-07 30.9 1.2 3 26 246 269 244 269 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF418-201 - 676 1.4e-118 382.6 150.8 4 18 2.7e-11 2.7e-08 33.9 0.7 1 26 272 297 272 297 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF418-201 - 676 1.4e-118 382.6 150.8 5 18 2e-11 2e-08 34.3 0.1 1 25 300 324 300 325 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF418-201 - 676 1.4e-118 382.6 150.8 6 18 7.4e-11 7.4e-08 32.5 1.6 2 25 329 352 328 353 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF418-201 - 676 1.4e-118 382.6 150.8 7 18 8.2e-10 8.1e-07 29.2 0.8 1 25 356 380 356 381 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF418-201 - 676 1.4e-118 382.6 150.8 8 18 2.1e-08 2.1e-05 24.8 1.9 2 25 385 408 384 409 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF418-201 - 676 1.4e-118 382.6 150.8 9 18 6.9e-11 6.9e-08 32.6 1.0 1 25 412 436 412 437 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF418-201 - 676 1.4e-118 382.6 150.8 10 18 6.8e-10 6.8e-07 29.4 0.7 1 24 440 463 440 464 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF418-201 - 676 1.4e-118 382.6 150.8 11 18 2.3e-10 2.2e-07 31.0 0.7 1 24 468 491 468 492 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF418-201 - 676 1.4e-118 382.6 150.8 12 18 2.1e-11 2.1e-08 34.2 0.5 2 24 497 519 496 521 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF418-201 - 676 1.4e-118 382.6 150.8 13 18 7.3e-11 7.3e-08 32.5 0.9 2 24 525 547 524 549 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF418-201 - 676 1.4e-118 382.6 150.8 14 18 2.6e-09 2.6e-06 27.6 2.0 2 26 553 577 552 577 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF418-201 - 676 1.4e-118 382.6 150.8 15 18 7.6e-11 7.5e-08 32.5 1.2 2 26 578 602 577 602 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF418-201 - 676 1.4e-118 382.6 150.8 16 18 2e-08 2e-05 24.8 1.6 4 25 608 629 607 630 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF418-201 - 676 1.4e-118 382.6 150.8 17 18 3.1e-11 3.1e-08 33.7 1.6 1 24 633 656 633 658 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF418-201 - 676 1.4e-118 382.6 150.8 18 18 0.0053 5.3 7.6 0.3 2 16 662 676 661 676 0.90 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZNF418-201 - 676 1.8e-86 280.0 142.6 1 18 0.23 2.3e+02 2.6 0.6 1 23 82 104 82 105 0.90 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF418-201 - 676 1.8e-86 280.0 142.6 2 18 3.5 3.5e+03 -1.2 0.7 1 12 203 214 203 218 0.75 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF418-201 - 676 1.8e-86 280.0 142.6 3 18 1.4e-05 0.014 15.9 2.1 2 23 231 252 230 252 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF418-201 - 676 1.8e-86 280.0 142.6 4 18 3e-09 3e-06 27.4 0.8 1 23 258 280 258 280 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF418-201 - 676 1.8e-86 280.0 142.6 5 18 3e-09 3e-06 27.4 0.8 1 23 286 308 286 308 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF418-201 - 676 1.8e-86 280.0 142.6 6 18 2.3e-09 2.3e-06 27.7 0.2 1 23 314 336 314 336 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF418-201 - 676 1.8e-86 280.0 142.6 7 18 4.8e-09 4.7e-06 26.7 0.8 1 23 342 364 342 364 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF418-201 - 676 1.8e-86 280.0 142.6 8 18 1.1e-07 0.00011 22.5 3.0 1 23 370 392 370 392 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF418-201 - 676 1.8e-86 280.0 142.6 9 18 8.7e-10 8.7e-07 29.1 1.4 1 23 398 420 398 420 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF418-201 - 676 1.8e-86 280.0 142.6 10 18 4e-10 4e-07 30.1 0.3 1 23 426 448 426 448 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF418-201 - 676 1.8e-86 280.0 142.6 11 18 5.8e-06 0.0057 17.0 2.0 1 23 454 476 454 476 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF418-201 - 676 1.8e-86 280.0 142.6 12 18 1.8e-08 1.8e-05 24.9 0.4 1 23 482 504 482 504 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF418-201 - 676 1.8e-86 280.0 142.6 13 18 9e-08 9e-05 22.7 2.4 1 23 510 532 510 532 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF418-201 - 676 1.8e-86 280.0 142.6 14 18 1.5e-08 1.5e-05 25.2 2.1 1 23 538 560 538 560 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF418-201 - 676 1.8e-86 280.0 142.6 15 18 0.0015 1.5 9.4 1.3 1 23 566 585 566 585 0.91 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF418-201 - 676 1.8e-86 280.0 142.6 16 18 5.9e-06 0.0059 17.0 4.1 1 23 591 613 591 613 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF418-201 - 676 1.8e-86 280.0 142.6 17 18 5.7e-07 0.00057 20.2 0.4 1 23 619 641 619 641 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF418-201 - 676 1.8e-86 280.0 142.6 18 18 1.1e-08 1.1e-05 25.6 2.7 1 23 647 669 647 669 0.98 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZNF418-201 - 676 3.1e-49 161.4 140.7 1 18 0.0068 6.8 7.8 0.6 1 24 82 105 82 105 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF418-201 - 676 3.1e-49 161.4 140.7 2 18 5.5 5.5e+03 -1.2 0.6 1 13 203 215 203 219 0.69 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF418-201 - 676 3.1e-49 161.4 140.7 3 18 0.0022 2.2 9.3 1.8 5 23 234 252 229 253 0.84 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF418-201 - 676 3.1e-49 161.4 140.7 4 18 2e-05 0.019 15.7 1.0 1 23 258 280 258 281 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF418-201 - 676 3.1e-49 161.4 140.7 5 18 2e-05 0.019 15.7 1.0 1 23 286 308 286 309 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF418-201 - 676 3.1e-49 161.4 140.7 6 18 6.7e-06 0.0067 17.2 0.2 1 23 314 336 314 337 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF418-201 - 676 3.1e-49 161.4 140.7 7 18 1.8e-05 0.018 15.8 0.9 1 23 342 364 342 365 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF418-201 - 676 3.1e-49 161.4 140.7 8 18 0.00015 0.15 12.9 3.0 1 23 370 392 370 393 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF418-201 - 676 3.1e-49 161.4 140.7 9 18 1e-06 0.001 19.7 1.0 1 23 398 420 398 421 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF418-201 - 676 3.1e-49 161.4 140.7 10 18 1.1e-06 0.0011 19.6 0.3 1 23 426 448 426 449 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF418-201 - 676 3.1e-49 161.4 140.7 11 18 0.0006 0.6 11.1 1.7 1 23 454 476 454 477 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF418-201 - 676 3.1e-49 161.4 140.7 12 18 8.3e-06 0.0083 16.9 0.5 1 23 482 504 482 505 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF418-201 - 676 3.1e-49 161.4 140.7 13 18 3.1e-06 0.003 18.2 2.8 1 23 510 532 510 533 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF418-201 - 676 3.1e-49 161.4 140.7 14 18 1.1e-06 0.0011 19.6 2.0 1 23 538 560 538 561 0.97 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF418-201 - 676 3.1e-49 161.4 140.7 15 18 0.0078 7.8 7.6 1.0 1 23 566 585 566 586 0.81 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF418-201 - 676 3.1e-49 161.4 140.7 16 18 0.00025 0.25 12.3 2.9 1 23 591 613 591 614 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF418-201 - 676 3.1e-49 161.4 140.7 17 18 6.2e-05 0.061 14.2 0.6 1 23 619 641 619 642 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF418-201 - 676 3.1e-49 161.4 140.7 18 18 2e-06 0.002 18.8 2.5 1 23 647 669 647 670 0.96 C2H2-type zinc finger KRAB PF01352.27 42 ZNF418-201 - 676 1.9e-19 69.0 0.8 1 1 3.5e-22 3.5e-19 68.2 0.8 2 42 5 45 4 45 0.97 KRAB box zf-C2H2_6 PF13912.6 27 ZNF418-201 - 676 5.6e-19 67.7 129.2 1 16 0.0016 1.6 8.8 0.6 4 16 232 244 232 253 0.84 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF418-201 - 676 5.6e-19 67.7 129.2 2 16 0.0029 2.9 8.0 0.7 2 12 258 268 258 280 0.90 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF418-201 - 676 5.6e-19 67.7 129.2 3 16 0.0029 2.9 8.0 0.7 2 12 286 296 286 308 0.90 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF418-201 - 676 5.6e-19 67.7 129.2 4 16 0.0018 1.8 8.6 0.4 2 12 314 324 314 337 0.83 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF418-201 - 676 5.6e-19 67.7 129.2 5 16 0.047 47 4.1 2.3 2 23 342 363 342 367 0.77 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF418-201 - 676 5.6e-19 67.7 129.2 6 16 0.1 1e+02 3.1 2.5 2 12 370 380 370 393 0.87 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF418-201 - 676 5.6e-19 67.7 129.2 7 16 0.019 19 5.4 4.6 2 13 398 409 398 420 0.78 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF418-201 - 676 5.6e-19 67.7 129.2 8 16 1.8e-05 0.018 15.0 1.1 2 24 426 448 426 451 0.95 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF418-201 - 676 5.6e-19 67.7 129.2 9 16 0.061 61 3.8 0.6 2 12 454 464 454 476 0.87 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF418-201 - 676 5.6e-19 67.7 129.2 10 16 0.00028 0.28 11.3 1.1 2 12 482 492 482 492 0.96 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF418-201 - 676 5.6e-19 67.7 129.2 11 16 6.1e-05 0.06 13.4 1.7 2 24 510 532 510 535 0.80 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF418-201 - 676 5.6e-19 67.7 129.2 12 16 0.0011 1.1 9.3 3.7 2 25 538 561 538 563 0.92 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF418-201 - 676 5.6e-19 67.7 129.2 13 16 0.0041 4 7.5 0.7 2 14 566 578 566 583 0.95 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF418-201 - 676 5.6e-19 67.7 129.2 14 16 0.0026 2.6 8.1 1.0 2 12 591 601 591 609 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF418-201 - 676 5.6e-19 67.7 129.2 15 16 4e-06 0.004 17.1 0.8 2 24 619 641 619 644 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF418-201 - 676 5.6e-19 67.7 129.2 16 16 5.8e-05 0.058 13.4 1.9 2 20 647 665 647 671 0.80 C2H2-type zinc finger zf-C2H2_jaz PF12171.8 27 ZNF418-201 - 676 1.7e-17 63.2 67.8 1 17 4.3 4.3e+03 -1.8 0.3 2 18 203 219 202 220 0.81 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF418-201 - 676 1.7e-17 63.2 67.8 2 17 0.63 6.2e+02 0.9 0.5 3 20 231 248 231 250 0.78 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF418-201 - 676 1.7e-17 63.2 67.8 3 17 0.0017 1.7 9.0 0.0 2 22 258 278 257 278 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF418-201 - 676 1.7e-17 63.2 67.8 4 17 0.0017 1.7 9.0 0.0 2 22 286 306 285 306 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF418-201 - 676 1.7e-17 63.2 67.8 5 17 0.03 30 5.1 0.0 2 22 314 334 313 334 0.89 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF418-201 - 676 1.7e-17 63.2 67.8 6 17 0.096 96 3.4 0.6 2 24 342 364 341 364 0.89 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF418-201 - 676 1.7e-17 63.2 67.8 7 17 0.38 3.8e+02 1.5 0.5 2 20 370 388 369 388 0.73 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF418-201 - 676 1.7e-17 63.2 67.8 8 17 0.00024 0.24 11.7 0.1 2 24 398 420 397 420 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF418-201 - 676 1.7e-17 63.2 67.8 9 17 0.00025 0.25 11.7 0.1 2 24 426 448 425 448 0.95 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF418-201 - 676 1.7e-17 63.2 67.8 10 17 0.04 40 4.7 0.1 2 22 454 474 453 474 0.91 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF418-201 - 676 1.7e-17 63.2 67.8 11 17 0.00089 0.89 9.9 0.1 2 22 482 502 481 502 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF418-201 - 676 1.7e-17 63.2 67.8 12 17 0.13 1.3e+02 3.1 0.2 2 11 510 519 509 530 0.86 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF418-201 - 676 1.7e-17 63.2 67.8 13 17 0.00085 0.84 10.0 0.5 2 24 538 560 537 560 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF418-201 - 676 1.7e-17 63.2 67.8 14 17 0.18 1.8e+02 2.6 0.1 2 13 566 577 565 580 0.91 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF418-201 - 676 1.7e-17 63.2 67.8 15 17 0.074 74 3.8 0.2 2 17 591 606 590 611 0.79 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF418-201 - 676 1.7e-17 63.2 67.8 16 17 0.039 39 4.7 0.0 2 21 619 638 618 639 0.84 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF418-201 - 676 1.7e-17 63.2 67.8 17 17 0.00029 0.29 11.5 0.1 2 22 647 667 646 667 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_11 PF16622.5 29 ZNF418-201 - 676 4.8e-11 42.2 95.0 1 17 7.5 7.5e+03 -3.2 0.2 4 11 81 88 80 89 0.79 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF418-201 - 676 4.8e-11 42.2 95.0 2 17 0.073 72 3.3 0.7 5 24 230 249 229 252 0.81 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF418-201 - 676 4.8e-11 42.2 95.0 3 17 0.00095 0.95 9.3 0.4 7 25 260 278 257 280 0.90 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF418-201 - 676 4.8e-11 42.2 95.0 4 17 0.00095 0.95 9.3 0.4 7 25 288 306 285 308 0.90 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF418-201 - 676 4.8e-11 42.2 95.0 5 17 0.0042 4.2 7.2 0.1 7 25 316 334 313 336 0.90 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF418-201 - 676 4.8e-11 42.2 95.0 6 17 0.00015 0.15 11.9 0.2 6 23 343 360 341 362 0.89 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF418-201 - 676 4.8e-11 42.2 95.0 7 17 0.00011 0.11 12.3 0.5 6 25 371 390 369 392 0.89 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF418-201 - 676 4.8e-11 42.2 95.0 8 17 0.013 12 5.7 0.5 7 23 400 416 397 418 0.90 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF418-201 - 676 4.8e-11 42.2 95.0 9 17 0.044 44 4.0 0.1 7 23 428 444 425 446 0.87 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF418-201 - 676 4.8e-11 42.2 95.0 10 17 6.1 6.1e+03 -2.9 0.4 7 11 456 460 454 463 0.78 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF418-201 - 676 4.8e-11 42.2 95.0 11 17 1 1e+03 -0.4 0.1 6 14 483 491 481 495 0.84 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF418-201 - 676 4.8e-11 42.2 95.0 12 17 0.00066 0.65 9.8 2.0 6 26 511 531 508 532 0.92 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF418-201 - 676 4.8e-11 42.2 95.0 13 17 0.024 24 4.8 1.1 7 23 540 556 537 558 0.92 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF418-201 - 676 4.8e-11 42.2 95.0 14 17 0.013 13 5.7 0.1 6 17 567 578 565 584 0.85 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF418-201 - 676 4.8e-11 42.2 95.0 15 17 0.035 35 4.3 0.2 6 15 592 601 590 610 0.88 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF418-201 - 676 4.8e-11 42.2 95.0 16 17 0.00062 0.61 9.9 0.1 6 26 620 640 618 641 0.91 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF418-201 - 676 4.8e-11 42.2 95.0 17 17 0.012 12 5.7 2.2 6 25 648 667 646 669 0.90 zinc-finger C2H2-type zf_UBZ PF18439.1 32 ZNF418-201 - 676 7.9e-11 41.4 98.4 1 19 5.8 5.8e+03 -3.0 0.1 4 10 83 89 81 90 0.82 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF418-201 - 676 7.9e-11 41.4 98.4 2 19 5.4 5.4e+03 -2.9 0.1 7 15 149 157 148 158 0.82 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF418-201 - 676 7.9e-11 41.4 98.4 3 19 0.1 1e+02 2.6 0.3 2 12 202 212 201 215 0.84 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF418-201 - 676 7.9e-11 41.4 98.4 4 19 0.24 2.4e+02 1.4 0.5 5 15 232 242 229 249 0.80 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF418-201 - 676 7.9e-11 41.4 98.4 5 19 0.0041 4 7.1 0.2 3 21 258 277 256 277 0.85 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF418-201 - 676 7.9e-11 41.4 98.4 6 19 0.0041 4 7.1 0.2 3 21 286 305 284 305 0.85 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF418-201 - 676 7.9e-11 41.4 98.4 7 19 0.0055 5.5 6.7 0.1 3 18 314 330 312 333 0.79 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF418-201 - 676 7.9e-11 41.4 98.4 8 19 0.0084 8.3 6.1 1.2 3 20 342 360 340 361 0.79 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF418-201 - 676 7.9e-11 41.4 98.4 9 19 0.00086 0.85 9.3 2.4 3 20 370 388 368 389 0.93 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF418-201 - 676 7.9e-11 41.4 98.4 10 19 0.016 16 5.2 0.1 3 14 398 409 396 417 0.83 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF418-201 - 676 7.9e-11 41.4 98.4 11 19 0.0081 8.1 6.1 0.1 3 20 426 444 424 445 0.80 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF418-201 - 676 7.9e-11 41.4 98.4 12 19 0.5 5e+02 0.4 0.4 3 20 454 472 453 473 0.74 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF418-201 - 676 7.9e-11 41.4 98.4 13 19 0.01 10 5.8 0.1 3 15 482 494 480 501 0.86 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF418-201 - 676 7.9e-11 41.4 98.4 14 19 0.00061 0.61 9.7 0.8 3 20 510 528 508 529 0.84 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF418-201 - 676 7.9e-11 41.4 98.4 15 19 0.0051 5.1 6.8 0.2 3 20 538 556 536 557 0.84 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF418-201 - 676 7.9e-11 41.4 98.4 16 19 0.014 14 5.4 0.2 3 20 566 581 564 582 0.83 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF418-201 - 676 7.9e-11 41.4 98.4 17 19 0.064 63 3.3 0.2 3 12 591 600 589 604 0.88 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF418-201 - 676 7.9e-11 41.4 98.4 18 19 1.8e-05 0.018 14.6 0.2 3 20 619 637 617 638 0.94 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF418-201 - 676 7.9e-11 41.4 98.4 19 19 0.0018 1.8 8.2 0.3 3 20 647 665 645 666 0.81 Ubiquitin-Binding Zinc Finger zf-met PF12874.7 25 ZNF418-201 - 676 2.9e-08 33.8 94.1 1 16 1.5 1.4e+03 -0.2 0.0 2 19 83 100 82 102 0.74 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF418-201 - 676 2.9e-08 33.8 94.1 2 16 0.00091 0.91 10.0 0.4 1 21 258 278 258 280 0.93 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF418-201 - 676 2.9e-08 33.8 94.1 3 16 0.00091 0.91 10.0 0.4 1 21 286 306 286 308 0.93 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF418-201 - 676 2.9e-08 33.8 94.1 4 16 0.015 15 6.1 0.2 1 21 314 334 314 336 0.92 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF418-201 - 676 2.9e-08 33.8 94.1 5 16 0.00023 0.22 11.9 1.4 1 23 342 364 342 365 0.95 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF418-201 - 676 2.9e-08 33.8 94.1 6 16 0.59 5.9e+02 1.1 1.8 1 19 370 388 370 392 0.88 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF418-201 - 676 2.9e-08 33.8 94.1 7 16 3e-05 0.03 14.7 0.7 1 23 398 420 398 421 0.95 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF418-201 - 676 2.9e-08 33.8 94.1 8 16 4.3e-05 0.043 14.2 0.6 1 23 426 448 426 449 0.95 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF418-201 - 676 2.9e-08 33.8 94.1 9 16 0.0066 6.6 7.3 0.3 1 21 454 474 454 476 0.93 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF418-201 - 676 2.9e-08 33.8 94.1 10 16 0.024 24 5.5 0.3 1 20 482 501 482 504 0.91 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF418-201 - 676 2.9e-08 33.8 94.1 11 16 0.28 2.8e+02 2.1 0.4 1 19 510 528 510 530 0.86 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF418-201 - 676 2.9e-08 33.8 94.1 12 16 1.1 1.1e+03 0.3 0.8 1 20 538 557 538 561 0.81 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF418-201 - 676 2.9e-08 33.8 94.1 13 16 1.7 1.7e+03 -0.4 0.3 1 12 566 577 566 578 0.92 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF418-201 - 676 2.9e-08 33.8 94.1 14 16 0.0066 6.5 7.3 0.3 1 20 591 610 591 611 0.90 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF418-201 - 676 2.9e-08 33.8 94.1 15 16 1 1e+03 0.3 0.1 1 10 619 628 619 629 0.90 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF418-201 - 676 2.9e-08 33.8 94.1 16 16 0.21 2.1e+02 2.5 0.9 1 20 647 666 647 669 0.90 Zinc-finger of C2H2 type Zn-ribbon_8 PF09723.10 40 ZNF418-201 - 676 1.6e-07 31.3 114.0 1 15 2.2 2.2e+03 -1.2 0.0 8 13 84 89 77 95 0.73 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF418-201 - 676 1.6e-07 31.3 114.0 2 15 0.98 9.8e+02 -0.0 4.5 6 37 203 240 202 242 0.61 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF418-201 - 676 1.6e-07 31.3 114.0 3 15 0.001 1 9.6 5.0 6 34 258 293 257 298 0.91 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF418-201 - 676 1.6e-07 31.3 114.0 4 15 0.0011 1.1 9.4 5.5 6 35 286 322 285 326 0.90 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF418-201 - 676 1.6e-07 31.3 114.0 5 15 0.0014 1.4 9.1 8.1 6 34 314 349 313 355 0.90 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF418-201 - 676 1.6e-07 31.3 114.0 6 15 0.19 1.9e+02 2.3 13.8 6 34 342 377 341 382 0.87 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF418-201 - 676 1.6e-07 31.3 114.0 7 15 0.03 30 4.8 10.8 6 38 370 409 369 411 0.87 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF418-201 - 676 1.6e-07 31.3 114.0 8 15 0.014 14 5.9 0.6 6 16 398 408 397 419 0.87 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF418-201 - 676 1.6e-07 31.3 114.0 9 15 0.0011 1.1 9.4 4.0 6 34 426 461 425 465 0.89 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF418-201 - 676 1.6e-07 31.3 114.0 10 15 4.5e-05 0.045 13.9 3.4 6 34 482 517 481 522 0.92 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF418-201 - 676 1.6e-07 31.3 114.0 11 15 0.00089 0.89 9.7 6.0 6 34 538 573 537 575 0.92 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF418-201 - 676 1.6e-07 31.3 114.0 12 15 0.0003 0.3 11.2 6.6 6 38 566 602 565 604 0.86 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF418-201 - 676 1.6e-07 31.3 114.0 13 15 0.00025 0.25 11.5 6.7 6 35 591 627 590 632 0.84 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF418-201 - 676 1.6e-07 31.3 114.0 14 15 0.0027 2.7 8.2 7.3 6 38 619 658 618 659 0.84 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF418-201 - 676 1.6e-07 31.3 114.0 15 15 0.006 5.9 7.1 0.7 6 18 647 659 646 671 0.83 Zinc ribbon domain C1_1 PF00130.22 53 ZNF418-201 - 676 2.1e-07 30.7 73.8 1 14 1 1e+03 -0.3 0.2 10 21 80 91 76 113 0.70 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF418-201 - 676 2.1e-07 30.7 73.8 2 14 5 5e+03 -2.5 0.8 17 35 192 209 191 212 0.64 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF418-201 - 676 2.1e-07 30.7 73.8 3 14 0.021 21 5.1 2.8 1 38 216 267 216 270 0.78 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF418-201 - 676 2.1e-07 30.7 73.8 4 14 0.011 11 6.0 2.6 1 38 248 295 248 298 0.81 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF418-201 - 676 2.1e-07 30.7 73.8 5 14 0.027 27 4.8 1.6 1 35 276 320 276 323 0.69 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF418-201 - 676 2.1e-07 30.7 73.8 6 14 0.012 12 5.9 2.3 3 38 306 351 302 354 0.81 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF418-201 - 676 2.1e-07 30.7 73.8 7 14 0.035 35 4.4 6.1 3 38 334 379 332 383 0.85 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF418-201 - 676 2.1e-07 30.7 73.8 8 14 0.0046 4.6 7.2 1.7 1 37 388 434 388 438 0.85 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF418-201 - 676 2.1e-07 30.7 73.8 9 14 0.013 13 5.8 0.8 9 36 423 461 415 464 0.81 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF418-201 - 676 2.1e-07 30.7 73.8 10 14 0.034 34 4.4 1.2 5 34 448 487 443 489 0.70 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF418-201 - 676 2.1e-07 30.7 73.8 11 14 0.00023 0.23 11.4 1.3 2 43 473 524 468 526 0.84 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF418-201 - 676 2.1e-07 30.7 73.8 12 14 0.00024 0.24 11.3 1.0 3 40 502 549 500 551 0.86 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF418-201 - 676 2.1e-07 30.7 73.8 13 14 0.00041 0.41 10.6 0.3 5 37 559 599 556 603 0.83 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF418-201 - 676 2.1e-07 30.7 73.8 14 14 2e-05 0.02 14.8 0.2 3 40 607 658 605 660 0.82 Phorbol esters/diacylglycerol binding domain (C1 domain) # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF418-201.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF418-201.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF418-201.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF418-201.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF418-201.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:05:52 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZNF418-202 - 697 1.8e-118 382.2 150.3 1 19 6.3 6.7e+03 -2.1 0.2 11 21 99 109 98 110 0.80 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF418-202 - 697 1.8e-118 382.2 150.3 2 19 0.011 12 6.5 2.6 1 18 117 134 117 135 0.90 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF418-202 - 697 1.8e-118 382.2 150.3 3 19 9.7 1e+04 -2.7 9.3 15 25 239 261 199 262 0.66 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF418-202 - 697 1.8e-118 382.2 150.3 4 19 2.3e-10 2.4e-07 30.8 1.2 3 26 267 290 265 290 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF418-202 - 697 1.8e-118 382.2 150.3 5 19 2.6e-11 2.8e-08 33.8 0.7 1 26 293 318 293 318 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF418-202 - 697 1.8e-118 382.2 150.3 6 19 1.9e-11 2e-08 34.3 0.1 1 25 321 345 321 346 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF418-202 - 697 1.8e-118 382.2 150.3 7 19 7.2e-11 7.6e-08 32.4 1.6 2 25 350 373 349 374 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF418-202 - 697 1.8e-118 382.2 150.3 8 19 8e-10 8.4e-07 29.1 0.8 1 25 377 401 377 402 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF418-202 - 697 1.8e-118 382.2 150.3 9 19 2e-08 2.1e-05 24.7 1.9 2 25 406 429 405 430 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF418-202 - 697 1.8e-118 382.2 150.3 10 19 6.8e-11 7.2e-08 32.5 1.0 1 25 433 457 433 458 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF418-202 - 697 1.8e-118 382.2 150.3 11 19 6.7e-10 7e-07 29.4 0.7 1 24 461 484 461 485 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF418-202 - 697 1.8e-118 382.2 150.3 12 19 2.2e-10 2.3e-07 30.9 0.7 1 24 489 512 489 513 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF418-202 - 697 1.8e-118 382.2 150.3 13 19 2.1e-11 2.2e-08 34.2 0.5 2 24 518 540 517 542 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF418-202 - 697 1.8e-118 382.2 150.3 14 19 7.2e-11 7.5e-08 32.5 0.9 2 24 546 568 545 570 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF418-202 - 697 1.8e-118 382.2 150.3 15 19 2.5e-09 2.7e-06 27.6 2.0 2 26 574 598 573 598 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF418-202 - 697 1.8e-118 382.2 150.3 16 19 7.4e-11 7.8e-08 32.4 1.2 2 26 599 623 598 623 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF418-202 - 697 1.8e-118 382.2 150.3 17 19 2e-08 2.1e-05 24.7 1.6 4 25 629 650 628 651 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF418-202 - 697 1.8e-118 382.2 150.3 18 19 3e-11 3.2e-08 33.6 1.6 1 24 654 677 654 679 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF418-202 - 697 1.8e-118 382.2 150.3 19 19 0.0052 5.5 7.6 0.3 2 16 683 697 682 697 0.90 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZNF418-202 - 697 3.4e-86 279.2 142.6 1 18 0.22 2.3e+02 2.5 0.6 1 23 103 125 103 126 0.90 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF418-202 - 697 3.4e-86 279.2 142.6 2 18 3.4 3.6e+03 -1.2 0.7 1 12 224 235 224 239 0.75 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF418-202 - 697 3.4e-86 279.2 142.6 3 18 1.3e-05 0.014 15.8 2.1 2 23 252 273 251 273 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF418-202 - 697 3.4e-86 279.2 142.6 4 18 3e-09 3.1e-06 27.3 0.8 1 23 279 301 279 301 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF418-202 - 697 3.4e-86 279.2 142.6 5 18 3e-09 3.1e-06 27.3 0.8 1 23 307 329 307 329 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF418-202 - 697 3.4e-86 279.2 142.6 6 18 2.3e-09 2.4e-06 27.7 0.2 1 23 335 357 335 357 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF418-202 - 697 3.4e-86 279.2 142.6 7 18 4.7e-09 4.9e-06 26.7 0.8 1 23 363 385 363 385 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF418-202 - 697 3.4e-86 279.2 142.6 8 18 1.1e-07 0.00011 22.4 3.0 1 23 391 413 391 413 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF418-202 - 697 3.4e-86 279.2 142.6 9 18 8.5e-10 9e-07 29.0 1.4 1 23 419 441 419 441 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF418-202 - 697 3.4e-86 279.2 142.6 10 18 3.9e-10 4.1e-07 30.1 0.3 1 23 447 469 447 469 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF418-202 - 697 3.4e-86 279.2 142.6 11 18 5.6e-06 0.0059 17.0 2.0 1 23 475 497 475 497 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF418-202 - 697 3.4e-86 279.2 142.6 12 18 1.8e-08 1.9e-05 24.9 0.4 1 23 503 525 503 525 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF418-202 - 697 3.4e-86 279.2 142.6 13 18 8.8e-08 9.3e-05 22.7 2.4 1 23 531 553 531 553 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF418-202 - 697 3.4e-86 279.2 142.6 14 18 1.5e-08 1.6e-05 25.1 2.1 1 23 559 581 559 581 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF418-202 - 697 3.4e-86 279.2 142.6 15 18 0.0015 1.6 9.3 1.3 1 23 587 606 587 606 0.91 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF418-202 - 697 3.4e-86 279.2 142.6 16 18 5.8e-06 0.0061 17.0 4.1 1 23 612 634 612 634 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF418-202 - 697 3.4e-86 279.2 142.6 17 18 5.6e-07 0.00059 20.2 0.4 1 23 640 662 640 662 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF418-202 - 697 3.4e-86 279.2 142.6 18 18 1.1e-08 1.1e-05 25.5 2.7 1 23 668 690 668 690 0.98 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZNF418-202 - 697 5.6e-49 160.5 140.7 1 18 0.0067 7.1 7.8 0.6 1 24 103 126 103 126 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF418-202 - 697 5.6e-49 160.5 140.7 2 18 5.4 5.7e+03 -1.3 0.6 1 13 224 236 224 240 0.69 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF418-202 - 697 5.6e-49 160.5 140.7 3 18 0.0022 2.3 9.3 1.8 5 23 255 273 250 274 0.84 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF418-202 - 697 5.6e-49 160.5 140.7 4 18 1.9e-05 0.02 15.7 1.0 1 23 279 301 279 302 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF418-202 - 697 5.6e-49 160.5 140.7 5 18 1.9e-05 0.02 15.7 1.0 1 23 307 329 307 330 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF418-202 - 697 5.6e-49 160.5 140.7 6 18 6.6e-06 0.0069 17.1 0.2 1 23 335 357 335 358 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF418-202 - 697 5.6e-49 160.5 140.7 7 18 1.8e-05 0.019 15.8 0.9 1 23 363 385 363 386 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF418-202 - 697 5.6e-49 160.5 140.7 8 18 0.00015 0.16 12.9 3.0 1 23 391 413 391 414 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF418-202 - 697 5.6e-49 160.5 140.7 9 18 1e-06 0.0011 19.7 1.0 1 23 419 441 419 442 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF418-202 - 697 5.6e-49 160.5 140.7 10 18 1.1e-06 0.0012 19.5 0.3 1 23 447 469 447 470 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF418-202 - 697 5.6e-49 160.5 140.7 11 18 0.00059 0.62 11.0 1.7 1 23 475 497 475 498 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF418-202 - 697 5.6e-49 160.5 140.7 12 18 8.1e-06 0.0086 16.8 0.5 1 23 503 525 503 526 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF418-202 - 697 5.6e-49 160.5 140.7 13 18 3e-06 0.0032 18.2 2.8 1 23 531 553 531 554 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF418-202 - 697 5.6e-49 160.5 140.7 14 18 1.1e-06 0.0011 19.6 2.0 1 23 559 581 559 582 0.97 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF418-202 - 697 5.6e-49 160.5 140.7 15 18 0.0076 8.1 7.6 1.0 1 23 587 606 587 607 0.81 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF418-202 - 697 5.6e-49 160.5 140.7 16 18 0.00024 0.26 12.3 2.9 1 23 612 634 612 635 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF418-202 - 697 5.6e-49 160.5 140.7 17 18 6e-05 0.064 14.1 0.6 1 23 640 662 640 663 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF418-202 - 697 5.6e-49 160.5 140.7 18 18 2e-06 0.0021 18.7 2.5 1 23 668 690 668 691 0.96 C2H2-type zinc finger KRAB PF01352.27 42 ZNF418-202 - 697 2e-19 68.9 0.8 1 1 3.4e-22 3.6e-19 68.1 0.8 2 42 26 66 25 66 0.97 KRAB box zf-C2H2_6 PF13912.6 27 ZNF418-202 - 697 9.4e-19 67.0 129.1 1 16 0.0016 1.7 8.8 0.6 4 16 253 265 253 274 0.84 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF418-202 - 697 9.4e-19 67.0 129.1 2 16 0.0028 3 8.0 0.7 2 12 279 289 279 301 0.90 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF418-202 - 697 9.4e-19 67.0 129.1 3 16 0.0028 3 8.0 0.7 2 12 307 317 307 329 0.90 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF418-202 - 697 9.4e-19 67.0 129.1 4 16 0.0018 1.9 8.6 0.4 2 12 335 345 335 358 0.84 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF418-202 - 697 9.4e-19 67.0 129.1 5 16 0.046 48 4.1 2.3 2 23 363 384 363 388 0.77 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF418-202 - 697 9.4e-19 67.0 129.1 6 16 0.1 1.1e+02 3.0 2.5 2 12 391 401 391 414 0.87 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF418-202 - 697 9.4e-19 67.0 129.1 7 16 0.017 18 5.4 4.5 2 13 419 430 419 441 0.78 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF418-202 - 697 9.4e-19 67.0 129.1 8 16 1.8e-05 0.019 15.0 1.1 2 24 447 469 447 472 0.95 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF418-202 - 697 9.4e-19 67.0 129.1 9 16 0.06 63 3.7 0.6 2 12 475 485 475 497 0.87 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF418-202 - 697 9.4e-19 67.0 129.1 10 16 0.00027 0.29 11.2 1.1 2 12 503 513 503 513 0.96 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF418-202 - 697 9.4e-19 67.0 129.1 11 16 5.9e-05 0.063 13.3 1.7 2 24 531 553 531 556 0.80 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF418-202 - 697 9.4e-19 67.0 129.1 12 16 0.0011 1.2 9.3 3.7 2 25 559 582 559 584 0.92 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF418-202 - 697 9.4e-19 67.0 129.1 13 16 0.004 4.2 7.5 0.7 2 14 587 599 587 604 0.95 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF418-202 - 697 9.4e-19 67.0 129.1 14 16 0.0026 2.7 8.1 1.0 2 12 612 622 612 630 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF418-202 - 697 9.4e-19 67.0 129.1 15 16 3.9e-06 0.0041 17.1 0.8 2 24 640 662 640 665 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF418-202 - 697 9.4e-19 67.0 129.1 16 16 5.7e-05 0.06 13.4 1.9 2 20 668 686 668 692 0.80 C2H2-type zinc finger zf-C2H2_jaz PF12171.8 27 ZNF418-202 - 697 3.3e-17 62.3 68.1 1 17 4.2 4.4e+03 -1.9 0.3 2 18 224 240 223 241 0.81 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF418-202 - 697 3.3e-17 62.3 68.1 2 17 0.61 6.5e+02 0.8 0.5 3 20 252 269 252 271 0.78 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF418-202 - 697 3.3e-17 62.3 68.1 3 17 0.0017 1.8 9.0 0.0 2 22 279 299 278 299 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF418-202 - 697 3.3e-17 62.3 68.1 4 17 0.0017 1.8 9.0 0.0 2 22 307 327 306 327 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF418-202 - 697 3.3e-17 62.3 68.1 5 17 0.029 31 5.0 0.0 2 22 335 355 334 355 0.89 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF418-202 - 697 3.3e-17 62.3 68.1 6 17 0.094 99 3.4 0.6 2 24 363 385 362 385 0.89 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF418-202 - 697 3.3e-17 62.3 68.1 7 17 0.37 3.9e+02 1.5 0.5 2 20 391 409 390 409 0.73 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF418-202 - 697 3.3e-17 62.3 68.1 8 17 0.00023 0.25 11.7 0.1 2 24 419 441 418 441 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF418-202 - 697 3.3e-17 62.3 68.1 9 17 0.00025 0.26 11.6 0.1 2 24 447 469 446 469 0.95 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF418-202 - 697 3.3e-17 62.3 68.1 10 17 0.039 41 4.6 0.1 2 22 475 495 474 495 0.91 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF418-202 - 697 3.3e-17 62.3 68.1 11 17 0.00087 0.92 9.9 0.1 2 22 503 523 502 523 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF418-202 - 697 3.3e-17 62.3 68.1 12 17 0.14 1.5e+02 2.8 0.2 2 11 531 540 530 550 0.90 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF418-202 - 697 3.3e-17 62.3 68.1 13 17 0.00083 0.87 9.9 0.5 2 24 559 581 558 581 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF418-202 - 697 3.3e-17 62.3 68.1 14 17 0.17 1.8e+02 2.6 0.1 2 13 587 598 586 601 0.91 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF418-202 - 697 3.3e-17 62.3 68.1 15 17 0.072 76 3.8 0.2 2 17 612 627 611 632 0.79 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF418-202 - 697 3.3e-17 62.3 68.1 16 17 0.038 40 4.6 0.0 2 21 640 659 639 660 0.84 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF418-202 - 697 3.3e-17 62.3 68.1 17 17 0.00028 0.3 11.4 0.1 2 22 668 688 667 688 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_11 PF16622.5 29 ZNF418-202 - 697 8e-11 41.5 95.0 1 17 7.3 7.7e+03 -3.2 0.2 4 11 102 109 101 110 0.79 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF418-202 - 697 8e-11 41.5 95.0 2 17 0.071 75 3.2 0.7 5 24 251 270 250 273 0.81 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF418-202 - 697 8e-11 41.5 95.0 3 17 0.00093 0.98 9.2 0.4 7 25 281 299 278 301 0.90 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF418-202 - 697 8e-11 41.5 95.0 4 17 0.00093 0.98 9.2 0.4 7 25 309 327 306 329 0.90 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF418-202 - 697 8e-11 41.5 95.0 5 17 0.0041 4.3 7.2 0.1 7 25 337 355 334 357 0.90 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF418-202 - 697 8e-11 41.5 95.0 6 17 0.00014 0.15 11.8 0.2 6 23 364 381 362 383 0.89 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF418-202 - 697 8e-11 41.5 95.0 7 17 0.0001 0.11 12.3 0.5 6 25 392 411 390 413 0.89 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF418-202 - 697 8e-11 41.5 95.0 8 17 0.012 13 5.7 0.5 7 23 421 437 418 439 0.90 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF418-202 - 697 8e-11 41.5 95.0 9 17 0.043 46 3.9 0.1 7 23 449 465 446 467 0.87 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF418-202 - 697 8e-11 41.5 95.0 10 17 5.9 6.3e+03 -2.9 0.4 7 11 477 481 475 484 0.78 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF418-202 - 697 8e-11 41.5 95.0 11 17 0.99 1e+03 -0.5 0.1 6 14 504 512 502 516 0.84 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF418-202 - 697 8e-11 41.5 95.0 12 17 0.00064 0.68 9.8 2.0 6 26 532 552 529 553 0.92 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF418-202 - 697 8e-11 41.5 95.0 13 17 0.023 24 4.8 1.1 7 23 561 577 558 579 0.92 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF418-202 - 697 8e-11 41.5 95.0 14 17 0.013 13 5.6 0.1 6 17 588 599 586 605 0.85 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF418-202 - 697 8e-11 41.5 95.0 15 17 0.035 37 4.2 0.2 6 15 613 622 611 631 0.88 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF418-202 - 697 8e-11 41.5 95.0 16 17 0.0006 0.63 9.8 0.1 6 26 641 661 639 662 0.91 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF418-202 - 697 8e-11 41.5 95.0 17 17 0.012 13 5.7 2.2 6 25 669 688 667 690 0.90 zinc-finger C2H2-type zf_UBZ PF18439.1 32 ZNF418-202 - 697 1.4e-10 40.6 98.4 1 19 5.7 6e+03 -3.0 0.1 4 10 104 110 102 111 0.82 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF418-202 - 697 1.4e-10 40.6 98.4 2 19 5.2 5.5e+03 -2.9 0.1 7 15 170 178 169 179 0.82 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF418-202 - 697 1.4e-10 40.6 98.4 3 19 0.1 1.1e+02 2.6 0.3 2 12 223 233 222 236 0.84 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF418-202 - 697 1.4e-10 40.6 98.4 4 19 0.24 2.5e+02 1.4 0.5 5 15 253 263 250 270 0.80 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF418-202 - 697 1.4e-10 40.6 98.4 5 19 0.004 4.2 7.1 0.2 3 21 279 298 277 298 0.85 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF418-202 - 697 1.4e-10 40.6 98.4 6 19 0.004 4.2 7.1 0.2 3 21 307 326 305 326 0.85 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF418-202 - 697 1.4e-10 40.6 98.4 7 19 0.0054 5.7 6.6 0.1 3 18 335 351 333 354 0.79 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF418-202 - 697 1.4e-10 40.6 98.4 8 19 0.0082 8.6 6.0 1.2 3 20 363 381 361 382 0.79 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF418-202 - 697 1.4e-10 40.6 98.4 9 19 0.00084 0.88 9.2 2.4 3 20 391 409 389 410 0.93 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF418-202 - 697 1.4e-10 40.6 98.4 10 19 0.016 17 5.1 0.1 3 14 419 430 417 438 0.83 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF418-202 - 697 1.4e-10 40.6 98.4 11 19 0.0079 8.3 6.1 0.1 3 20 447 465 445 466 0.80 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF418-202 - 697 1.4e-10 40.6 98.4 12 19 0.49 5.2e+02 0.4 0.4 3 20 475 493 474 494 0.74 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF418-202 - 697 1.4e-10 40.6 98.4 13 19 0.0098 10 5.8 0.1 3 15 503 515 501 522 0.86 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF418-202 - 697 1.4e-10 40.6 98.4 14 19 0.0006 0.63 9.7 0.8 3 20 531 549 529 550 0.84 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF418-202 - 697 1.4e-10 40.6 98.4 15 19 0.005 5.3 6.7 0.2 3 20 559 577 557 578 0.84 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF418-202 - 697 1.4e-10 40.6 98.4 16 19 0.014 15 5.3 0.2 3 20 587 602 585 603 0.83 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF418-202 - 697 1.4e-10 40.6 98.4 17 19 0.062 66 3.2 0.2 3 12 612 621 610 625 0.88 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF418-202 - 697 1.4e-10 40.6 98.4 18 19 1.8e-05 0.019 14.6 0.2 3 20 640 658 638 659 0.94 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF418-202 - 697 1.4e-10 40.6 98.4 19 19 0.0018 1.9 8.2 0.3 3 20 668 686 666 687 0.81 Ubiquitin-Binding Zinc Finger zf-met PF12874.7 25 ZNF418-202 - 697 4.6e-08 33.2 94.1 1 16 1.4 1.5e+03 -0.2 0.0 2 19 104 121 103 123 0.74 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF418-202 - 697 4.6e-08 33.2 94.1 2 16 0.00089 0.94 10.0 0.4 1 21 279 299 279 301 0.93 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF418-202 - 697 4.6e-08 33.2 94.1 3 16 0.00089 0.94 10.0 0.4 1 21 307 327 307 329 0.93 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF418-202 - 697 4.6e-08 33.2 94.1 4 16 0.015 16 6.1 0.2 1 21 335 355 335 357 0.92 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF418-202 - 697 4.6e-08 33.2 94.1 5 16 0.00022 0.23 11.9 1.4 1 23 363 385 363 386 0.95 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF418-202 - 697 4.6e-08 33.2 94.1 6 16 0.57 6.1e+02 1.0 1.8 1 19 391 409 391 413 0.88 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF418-202 - 697 4.6e-08 33.2 94.1 7 16 2.9e-05 0.031 14.7 0.7 1 23 419 441 419 442 0.95 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF418-202 - 697 4.6e-08 33.2 94.1 8 16 4.2e-05 0.045 14.2 0.6 1 23 447 469 447 470 0.95 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF418-202 - 697 4.6e-08 33.2 94.1 9 16 0.0065 6.8 7.2 0.3 1 21 475 495 475 497 0.93 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF418-202 - 697 4.6e-08 33.2 94.1 10 16 0.023 24 5.5 0.3 1 20 503 522 503 525 0.91 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF418-202 - 697 4.6e-08 33.2 94.1 11 16 0.28 2.9e+02 2.0 0.4 1 19 531 549 531 551 0.86 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF418-202 - 697 4.6e-08 33.2 94.1 12 16 1 1.1e+03 0.2 0.8 1 20 559 578 559 582 0.81 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF418-202 - 697 4.6e-08 33.2 94.1 13 16 1.6 1.7e+03 -0.4 0.3 1 12 587 598 587 599 0.92 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF418-202 - 697 4.6e-08 33.2 94.1 14 16 0.0064 6.8 7.2 0.3 1 20 612 631 612 632 0.90 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF418-202 - 697 4.6e-08 33.2 94.1 15 16 1 1.1e+03 0.3 0.1 1 10 640 649 640 650 0.90 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF418-202 - 697 4.6e-08 33.2 94.1 16 16 0.21 2.2e+02 2.4 0.9 1 20 668 687 668 690 0.90 Zinc-finger of C2H2 type Zn-ribbon_8 PF09723.10 40 ZNF418-202 - 697 4.8e-07 29.8 115.0 1 15 2.3 2.4e+03 -1.2 0.1 8 13 105 110 98 115 0.72 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF418-202 - 697 4.8e-07 29.8 115.0 2 15 0.96 1e+03 -0.1 4.5 6 37 224 261 223 263 0.61 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF418-202 - 697 4.8e-07 29.8 115.0 3 15 0.0011 1.2 9.3 5.2 6 34 279 314 278 319 0.91 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF418-202 - 697 4.8e-07 29.8 115.0 4 15 0.0013 1.4 9.1 5.7 6 35 307 343 306 347 0.90 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF418-202 - 697 4.8e-07 29.8 115.0 5 15 0.0017 1.8 8.8 8.3 6 34 335 370 333 376 0.90 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF418-202 - 697 4.8e-07 29.8 115.0 6 15 0.22 2.4e+02 2.0 14.0 6 34 363 398 362 403 0.87 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF418-202 - 697 4.8e-07 29.8 115.0 7 15 0.032 34 4.7 10.9 6 38 391 430 390 432 0.87 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF418-202 - 697 4.8e-07 29.8 115.0 8 15 0.014 15 5.8 0.6 6 16 419 429 418 439 0.87 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF418-202 - 697 4.8e-07 29.8 115.0 9 15 0.0011 1.1 9.4 4.0 6 34 447 482 446 486 0.89 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF418-202 - 697 4.8e-07 29.8 115.0 10 15 4.4e-05 0.046 13.8 3.4 6 34 503 538 502 543 0.92 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF418-202 - 697 4.8e-07 29.8 115.0 11 15 0.00048 0.51 10.5 5.4 6 34 559 594 558 600 0.92 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF418-202 - 697 4.8e-07 29.8 115.0 12 15 0.00027 0.29 11.3 6.5 6 38 587 623 586 625 0.86 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF418-202 - 697 4.8e-07 29.8 115.0 13 15 0.00021 0.22 11.6 6.5 6 35 612 648 611 653 0.84 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF418-202 - 697 4.8e-07 29.8 115.0 14 15 0.0024 2.6 8.3 7.3 6 38 640 679 639 681 0.84 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF418-202 - 697 4.8e-07 29.8 115.0 15 15 0.0059 6.2 7.0 0.7 6 18 668 680 667 692 0.83 Zinc ribbon domain # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF418-202.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF418-202.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF418-202.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF418-202.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF418-202.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:05:53 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF418-203.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF418-203.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF418-203.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF418-203.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF418-203.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:05:53 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF418-204.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF418-204.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF418-204.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF418-204.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF418-204.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:05:53 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZNF418-205 - 676 1.4e-118 382.6 150.8 1 18 6.5 6.4e+03 -2.1 0.2 11 21 78 88 77 89 0.80 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF418-205 - 676 1.4e-118 382.6 150.8 2 18 0.012 12 6.6 2.6 1 18 96 113 96 114 0.90 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF418-205 - 676 1.4e-118 382.6 150.8 3 18 2.4e-10 2.4e-07 30.9 1.2 3 26 246 269 244 269 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF418-205 - 676 1.4e-118 382.6 150.8 4 18 2.7e-11 2.7e-08 33.9 0.7 1 26 272 297 272 297 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF418-205 - 676 1.4e-118 382.6 150.8 5 18 2e-11 2e-08 34.3 0.1 1 25 300 324 300 325 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF418-205 - 676 1.4e-118 382.6 150.8 6 18 7.4e-11 7.4e-08 32.5 1.6 2 25 329 352 328 353 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF418-205 - 676 1.4e-118 382.6 150.8 7 18 8.2e-10 8.1e-07 29.2 0.8 1 25 356 380 356 381 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF418-205 - 676 1.4e-118 382.6 150.8 8 18 2.1e-08 2.1e-05 24.8 1.9 2 25 385 408 384 409 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF418-205 - 676 1.4e-118 382.6 150.8 9 18 6.9e-11 6.9e-08 32.6 1.0 1 25 412 436 412 437 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF418-205 - 676 1.4e-118 382.6 150.8 10 18 6.8e-10 6.8e-07 29.4 0.7 1 24 440 463 440 464 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF418-205 - 676 1.4e-118 382.6 150.8 11 18 2.3e-10 2.2e-07 31.0 0.7 1 24 468 491 468 492 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF418-205 - 676 1.4e-118 382.6 150.8 12 18 2.1e-11 2.1e-08 34.2 0.5 2 24 497 519 496 521 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF418-205 - 676 1.4e-118 382.6 150.8 13 18 7.3e-11 7.3e-08 32.5 0.9 2 24 525 547 524 549 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF418-205 - 676 1.4e-118 382.6 150.8 14 18 2.6e-09 2.6e-06 27.6 2.0 2 26 553 577 552 577 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF418-205 - 676 1.4e-118 382.6 150.8 15 18 7.6e-11 7.5e-08 32.5 1.2 2 26 578 602 577 602 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF418-205 - 676 1.4e-118 382.6 150.8 16 18 2e-08 2e-05 24.8 1.6 4 25 608 629 607 630 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF418-205 - 676 1.4e-118 382.6 150.8 17 18 3.1e-11 3.1e-08 33.7 1.6 1 24 633 656 633 658 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF418-205 - 676 1.4e-118 382.6 150.8 18 18 0.0053 5.3 7.6 0.3 2 16 662 676 661 676 0.90 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZNF418-205 - 676 1.8e-86 280.0 142.6 1 18 0.23 2.3e+02 2.6 0.6 1 23 82 104 82 105 0.90 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF418-205 - 676 1.8e-86 280.0 142.6 2 18 3.5 3.5e+03 -1.2 0.7 1 12 203 214 203 218 0.75 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF418-205 - 676 1.8e-86 280.0 142.6 3 18 1.4e-05 0.014 15.9 2.1 2 23 231 252 230 252 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF418-205 - 676 1.8e-86 280.0 142.6 4 18 3e-09 3e-06 27.4 0.8 1 23 258 280 258 280 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF418-205 - 676 1.8e-86 280.0 142.6 5 18 3e-09 3e-06 27.4 0.8 1 23 286 308 286 308 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF418-205 - 676 1.8e-86 280.0 142.6 6 18 2.3e-09 2.3e-06 27.7 0.2 1 23 314 336 314 336 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF418-205 - 676 1.8e-86 280.0 142.6 7 18 4.8e-09 4.7e-06 26.7 0.8 1 23 342 364 342 364 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF418-205 - 676 1.8e-86 280.0 142.6 8 18 1.1e-07 0.00011 22.5 3.0 1 23 370 392 370 392 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF418-205 - 676 1.8e-86 280.0 142.6 9 18 8.7e-10 8.7e-07 29.1 1.4 1 23 398 420 398 420 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF418-205 - 676 1.8e-86 280.0 142.6 10 18 4e-10 4e-07 30.1 0.3 1 23 426 448 426 448 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF418-205 - 676 1.8e-86 280.0 142.6 11 18 5.8e-06 0.0057 17.0 2.0 1 23 454 476 454 476 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF418-205 - 676 1.8e-86 280.0 142.6 12 18 1.8e-08 1.8e-05 24.9 0.4 1 23 482 504 482 504 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF418-205 - 676 1.8e-86 280.0 142.6 13 18 9e-08 9e-05 22.7 2.4 1 23 510 532 510 532 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF418-205 - 676 1.8e-86 280.0 142.6 14 18 1.5e-08 1.5e-05 25.2 2.1 1 23 538 560 538 560 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF418-205 - 676 1.8e-86 280.0 142.6 15 18 0.0015 1.5 9.4 1.3 1 23 566 585 566 585 0.91 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF418-205 - 676 1.8e-86 280.0 142.6 16 18 5.9e-06 0.0059 17.0 4.1 1 23 591 613 591 613 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF418-205 - 676 1.8e-86 280.0 142.6 17 18 5.7e-07 0.00057 20.2 0.4 1 23 619 641 619 641 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF418-205 - 676 1.8e-86 280.0 142.6 18 18 1.1e-08 1.1e-05 25.6 2.7 1 23 647 669 647 669 0.98 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZNF418-205 - 676 3.1e-49 161.4 140.7 1 18 0.0068 6.8 7.8 0.6 1 24 82 105 82 105 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF418-205 - 676 3.1e-49 161.4 140.7 2 18 5.5 5.5e+03 -1.2 0.6 1 13 203 215 203 219 0.69 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF418-205 - 676 3.1e-49 161.4 140.7 3 18 0.0022 2.2 9.3 1.8 5 23 234 252 229 253 0.84 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF418-205 - 676 3.1e-49 161.4 140.7 4 18 2e-05 0.019 15.7 1.0 1 23 258 280 258 281 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF418-205 - 676 3.1e-49 161.4 140.7 5 18 2e-05 0.019 15.7 1.0 1 23 286 308 286 309 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF418-205 - 676 3.1e-49 161.4 140.7 6 18 6.7e-06 0.0067 17.2 0.2 1 23 314 336 314 337 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF418-205 - 676 3.1e-49 161.4 140.7 7 18 1.8e-05 0.018 15.8 0.9 1 23 342 364 342 365 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF418-205 - 676 3.1e-49 161.4 140.7 8 18 0.00015 0.15 12.9 3.0 1 23 370 392 370 393 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF418-205 - 676 3.1e-49 161.4 140.7 9 18 1e-06 0.001 19.7 1.0 1 23 398 420 398 421 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF418-205 - 676 3.1e-49 161.4 140.7 10 18 1.1e-06 0.0011 19.6 0.3 1 23 426 448 426 449 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF418-205 - 676 3.1e-49 161.4 140.7 11 18 0.0006 0.6 11.1 1.7 1 23 454 476 454 477 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF418-205 - 676 3.1e-49 161.4 140.7 12 18 8.3e-06 0.0083 16.9 0.5 1 23 482 504 482 505 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF418-205 - 676 3.1e-49 161.4 140.7 13 18 3.1e-06 0.003 18.2 2.8 1 23 510 532 510 533 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF418-205 - 676 3.1e-49 161.4 140.7 14 18 1.1e-06 0.0011 19.6 2.0 1 23 538 560 538 561 0.97 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF418-205 - 676 3.1e-49 161.4 140.7 15 18 0.0078 7.8 7.6 1.0 1 23 566 585 566 586 0.81 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF418-205 - 676 3.1e-49 161.4 140.7 16 18 0.00025 0.25 12.3 2.9 1 23 591 613 591 614 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF418-205 - 676 3.1e-49 161.4 140.7 17 18 6.2e-05 0.061 14.2 0.6 1 23 619 641 619 642 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF418-205 - 676 3.1e-49 161.4 140.7 18 18 2e-06 0.002 18.8 2.5 1 23 647 669 647 670 0.96 C2H2-type zinc finger KRAB PF01352.27 42 ZNF418-205 - 676 1.9e-19 69.0 0.8 1 1 3.5e-22 3.5e-19 68.2 0.8 2 42 5 45 4 45 0.97 KRAB box zf-C2H2_6 PF13912.6 27 ZNF418-205 - 676 5.6e-19 67.7 129.2 1 16 0.0016 1.6 8.8 0.6 4 16 232 244 232 253 0.84 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF418-205 - 676 5.6e-19 67.7 129.2 2 16 0.0029 2.9 8.0 0.7 2 12 258 268 258 280 0.90 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF418-205 - 676 5.6e-19 67.7 129.2 3 16 0.0029 2.9 8.0 0.7 2 12 286 296 286 308 0.90 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF418-205 - 676 5.6e-19 67.7 129.2 4 16 0.0018 1.8 8.6 0.4 2 12 314 324 314 337 0.83 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF418-205 - 676 5.6e-19 67.7 129.2 5 16 0.047 47 4.1 2.3 2 23 342 363 342 367 0.77 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF418-205 - 676 5.6e-19 67.7 129.2 6 16 0.1 1e+02 3.1 2.5 2 12 370 380 370 393 0.87 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF418-205 - 676 5.6e-19 67.7 129.2 7 16 0.019 19 5.4 4.6 2 13 398 409 398 420 0.78 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF418-205 - 676 5.6e-19 67.7 129.2 8 16 1.8e-05 0.018 15.0 1.1 2 24 426 448 426 451 0.95 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF418-205 - 676 5.6e-19 67.7 129.2 9 16 0.061 61 3.8 0.6 2 12 454 464 454 476 0.87 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF418-205 - 676 5.6e-19 67.7 129.2 10 16 0.00028 0.28 11.3 1.1 2 12 482 492 482 492 0.96 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF418-205 - 676 5.6e-19 67.7 129.2 11 16 6.1e-05 0.06 13.4 1.7 2 24 510 532 510 535 0.80 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF418-205 - 676 5.6e-19 67.7 129.2 12 16 0.0011 1.1 9.3 3.7 2 25 538 561 538 563 0.92 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF418-205 - 676 5.6e-19 67.7 129.2 13 16 0.0041 4 7.5 0.7 2 14 566 578 566 583 0.95 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF418-205 - 676 5.6e-19 67.7 129.2 14 16 0.0026 2.6 8.1 1.0 2 12 591 601 591 609 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF418-205 - 676 5.6e-19 67.7 129.2 15 16 4e-06 0.004 17.1 0.8 2 24 619 641 619 644 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF418-205 - 676 5.6e-19 67.7 129.2 16 16 5.8e-05 0.058 13.4 1.9 2 20 647 665 647 671 0.80 C2H2-type zinc finger zf-C2H2_jaz PF12171.8 27 ZNF418-205 - 676 1.7e-17 63.2 67.8 1 17 4.3 4.3e+03 -1.8 0.3 2 18 203 219 202 220 0.81 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF418-205 - 676 1.7e-17 63.2 67.8 2 17 0.63 6.2e+02 0.9 0.5 3 20 231 248 231 250 0.78 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF418-205 - 676 1.7e-17 63.2 67.8 3 17 0.0017 1.7 9.0 0.0 2 22 258 278 257 278 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF418-205 - 676 1.7e-17 63.2 67.8 4 17 0.0017 1.7 9.0 0.0 2 22 286 306 285 306 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF418-205 - 676 1.7e-17 63.2 67.8 5 17 0.03 30 5.1 0.0 2 22 314 334 313 334 0.89 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF418-205 - 676 1.7e-17 63.2 67.8 6 17 0.096 96 3.4 0.6 2 24 342 364 341 364 0.89 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF418-205 - 676 1.7e-17 63.2 67.8 7 17 0.38 3.8e+02 1.5 0.5 2 20 370 388 369 388 0.73 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF418-205 - 676 1.7e-17 63.2 67.8 8 17 0.00024 0.24 11.7 0.1 2 24 398 420 397 420 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF418-205 - 676 1.7e-17 63.2 67.8 9 17 0.00025 0.25 11.7 0.1 2 24 426 448 425 448 0.95 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF418-205 - 676 1.7e-17 63.2 67.8 10 17 0.04 40 4.7 0.1 2 22 454 474 453 474 0.91 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF418-205 - 676 1.7e-17 63.2 67.8 11 17 0.00089 0.89 9.9 0.1 2 22 482 502 481 502 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF418-205 - 676 1.7e-17 63.2 67.8 12 17 0.13 1.3e+02 3.1 0.2 2 11 510 519 509 530 0.86 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF418-205 - 676 1.7e-17 63.2 67.8 13 17 0.00085 0.84 10.0 0.5 2 24 538 560 537 560 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF418-205 - 676 1.7e-17 63.2 67.8 14 17 0.18 1.8e+02 2.6 0.1 2 13 566 577 565 580 0.91 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF418-205 - 676 1.7e-17 63.2 67.8 15 17 0.074 74 3.8 0.2 2 17 591 606 590 611 0.79 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF418-205 - 676 1.7e-17 63.2 67.8 16 17 0.039 39 4.7 0.0 2 21 619 638 618 639 0.84 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF418-205 - 676 1.7e-17 63.2 67.8 17 17 0.00029 0.29 11.5 0.1 2 22 647 667 646 667 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_11 PF16622.5 29 ZNF418-205 - 676 4.8e-11 42.2 95.0 1 17 7.5 7.5e+03 -3.2 0.2 4 11 81 88 80 89 0.79 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF418-205 - 676 4.8e-11 42.2 95.0 2 17 0.073 72 3.3 0.7 5 24 230 249 229 252 0.81 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF418-205 - 676 4.8e-11 42.2 95.0 3 17 0.00095 0.95 9.3 0.4 7 25 260 278 257 280 0.90 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF418-205 - 676 4.8e-11 42.2 95.0 4 17 0.00095 0.95 9.3 0.4 7 25 288 306 285 308 0.90 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF418-205 - 676 4.8e-11 42.2 95.0 5 17 0.0042 4.2 7.2 0.1 7 25 316 334 313 336 0.90 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF418-205 - 676 4.8e-11 42.2 95.0 6 17 0.00015 0.15 11.9 0.2 6 23 343 360 341 362 0.89 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF418-205 - 676 4.8e-11 42.2 95.0 7 17 0.00011 0.11 12.3 0.5 6 25 371 390 369 392 0.89 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF418-205 - 676 4.8e-11 42.2 95.0 8 17 0.013 12 5.7 0.5 7 23 400 416 397 418 0.90 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF418-205 - 676 4.8e-11 42.2 95.0 9 17 0.044 44 4.0 0.1 7 23 428 444 425 446 0.87 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF418-205 - 676 4.8e-11 42.2 95.0 10 17 6.1 6.1e+03 -2.9 0.4 7 11 456 460 454 463 0.78 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF418-205 - 676 4.8e-11 42.2 95.0 11 17 1 1e+03 -0.4 0.1 6 14 483 491 481 495 0.84 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF418-205 - 676 4.8e-11 42.2 95.0 12 17 0.00066 0.65 9.8 2.0 6 26 511 531 508 532 0.92 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF418-205 - 676 4.8e-11 42.2 95.0 13 17 0.024 24 4.8 1.1 7 23 540 556 537 558 0.92 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF418-205 - 676 4.8e-11 42.2 95.0 14 17 0.013 13 5.7 0.1 6 17 567 578 565 584 0.85 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF418-205 - 676 4.8e-11 42.2 95.0 15 17 0.035 35 4.3 0.2 6 15 592 601 590 610 0.88 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF418-205 - 676 4.8e-11 42.2 95.0 16 17 0.00062 0.61 9.9 0.1 6 26 620 640 618 641 0.91 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF418-205 - 676 4.8e-11 42.2 95.0 17 17 0.012 12 5.7 2.2 6 25 648 667 646 669 0.90 zinc-finger C2H2-type zf_UBZ PF18439.1 32 ZNF418-205 - 676 7.9e-11 41.4 98.4 1 19 5.8 5.8e+03 -3.0 0.1 4 10 83 89 81 90 0.82 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF418-205 - 676 7.9e-11 41.4 98.4 2 19 5.4 5.4e+03 -2.9 0.1 7 15 149 157 148 158 0.82 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF418-205 - 676 7.9e-11 41.4 98.4 3 19 0.1 1e+02 2.6 0.3 2 12 202 212 201 215 0.84 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF418-205 - 676 7.9e-11 41.4 98.4 4 19 0.24 2.4e+02 1.4 0.5 5 15 232 242 229 249 0.80 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF418-205 - 676 7.9e-11 41.4 98.4 5 19 0.0041 4 7.1 0.2 3 21 258 277 256 277 0.85 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF418-205 - 676 7.9e-11 41.4 98.4 6 19 0.0041 4 7.1 0.2 3 21 286 305 284 305 0.85 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF418-205 - 676 7.9e-11 41.4 98.4 7 19 0.0055 5.5 6.7 0.1 3 18 314 330 312 333 0.79 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF418-205 - 676 7.9e-11 41.4 98.4 8 19 0.0084 8.3 6.1 1.2 3 20 342 360 340 361 0.79 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF418-205 - 676 7.9e-11 41.4 98.4 9 19 0.00086 0.85 9.3 2.4 3 20 370 388 368 389 0.93 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF418-205 - 676 7.9e-11 41.4 98.4 10 19 0.016 16 5.2 0.1 3 14 398 409 396 417 0.83 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF418-205 - 676 7.9e-11 41.4 98.4 11 19 0.0081 8.1 6.1 0.1 3 20 426 444 424 445 0.80 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF418-205 - 676 7.9e-11 41.4 98.4 12 19 0.5 5e+02 0.4 0.4 3 20 454 472 453 473 0.74 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF418-205 - 676 7.9e-11 41.4 98.4 13 19 0.01 10 5.8 0.1 3 15 482 494 480 501 0.86 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF418-205 - 676 7.9e-11 41.4 98.4 14 19 0.00061 0.61 9.7 0.8 3 20 510 528 508 529 0.84 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF418-205 - 676 7.9e-11 41.4 98.4 15 19 0.0051 5.1 6.8 0.2 3 20 538 556 536 557 0.84 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF418-205 - 676 7.9e-11 41.4 98.4 16 19 0.014 14 5.4 0.2 3 20 566 581 564 582 0.83 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF418-205 - 676 7.9e-11 41.4 98.4 17 19 0.064 63 3.3 0.2 3 12 591 600 589 604 0.88 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF418-205 - 676 7.9e-11 41.4 98.4 18 19 1.8e-05 0.018 14.6 0.2 3 20 619 637 617 638 0.94 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF418-205 - 676 7.9e-11 41.4 98.4 19 19 0.0018 1.8 8.2 0.3 3 20 647 665 645 666 0.81 Ubiquitin-Binding Zinc Finger zf-met PF12874.7 25 ZNF418-205 - 676 2.9e-08 33.8 94.1 1 16 1.5 1.4e+03 -0.2 0.0 2 19 83 100 82 102 0.74 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF418-205 - 676 2.9e-08 33.8 94.1 2 16 0.00091 0.91 10.0 0.4 1 21 258 278 258 280 0.93 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF418-205 - 676 2.9e-08 33.8 94.1 3 16 0.00091 0.91 10.0 0.4 1 21 286 306 286 308 0.93 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF418-205 - 676 2.9e-08 33.8 94.1 4 16 0.015 15 6.1 0.2 1 21 314 334 314 336 0.92 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF418-205 - 676 2.9e-08 33.8 94.1 5 16 0.00023 0.22 11.9 1.4 1 23 342 364 342 365 0.95 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF418-205 - 676 2.9e-08 33.8 94.1 6 16 0.59 5.9e+02 1.1 1.8 1 19 370 388 370 392 0.88 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF418-205 - 676 2.9e-08 33.8 94.1 7 16 3e-05 0.03 14.7 0.7 1 23 398 420 398 421 0.95 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF418-205 - 676 2.9e-08 33.8 94.1 8 16 4.3e-05 0.043 14.2 0.6 1 23 426 448 426 449 0.95 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF418-205 - 676 2.9e-08 33.8 94.1 9 16 0.0066 6.6 7.3 0.3 1 21 454 474 454 476 0.93 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF418-205 - 676 2.9e-08 33.8 94.1 10 16 0.024 24 5.5 0.3 1 20 482 501 482 504 0.91 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF418-205 - 676 2.9e-08 33.8 94.1 11 16 0.28 2.8e+02 2.1 0.4 1 19 510 528 510 530 0.86 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF418-205 - 676 2.9e-08 33.8 94.1 12 16 1.1 1.1e+03 0.3 0.8 1 20 538 557 538 561 0.81 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF418-205 - 676 2.9e-08 33.8 94.1 13 16 1.7 1.7e+03 -0.4 0.3 1 12 566 577 566 578 0.92 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF418-205 - 676 2.9e-08 33.8 94.1 14 16 0.0066 6.5 7.3 0.3 1 20 591 610 591 611 0.90 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF418-205 - 676 2.9e-08 33.8 94.1 15 16 1 1e+03 0.3 0.1 1 10 619 628 619 629 0.90 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF418-205 - 676 2.9e-08 33.8 94.1 16 16 0.21 2.1e+02 2.5 0.9 1 20 647 666 647 669 0.90 Zinc-finger of C2H2 type Zn-ribbon_8 PF09723.10 40 ZNF418-205 - 676 1.6e-07 31.3 114.0 1 15 2.2 2.2e+03 -1.2 0.0 8 13 84 89 77 95 0.73 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF418-205 - 676 1.6e-07 31.3 114.0 2 15 0.98 9.8e+02 -0.0 4.5 6 37 203 240 202 242 0.61 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF418-205 - 676 1.6e-07 31.3 114.0 3 15 0.001 1 9.6 5.0 6 34 258 293 257 298 0.91 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF418-205 - 676 1.6e-07 31.3 114.0 4 15 0.0011 1.1 9.4 5.5 6 35 286 322 285 326 0.90 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF418-205 - 676 1.6e-07 31.3 114.0 5 15 0.0014 1.4 9.1 8.1 6 34 314 349 313 355 0.90 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF418-205 - 676 1.6e-07 31.3 114.0 6 15 0.19 1.9e+02 2.3 13.8 6 34 342 377 341 382 0.87 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF418-205 - 676 1.6e-07 31.3 114.0 7 15 0.03 30 4.8 10.8 6 38 370 409 369 411 0.87 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF418-205 - 676 1.6e-07 31.3 114.0 8 15 0.014 14 5.9 0.6 6 16 398 408 397 419 0.87 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF418-205 - 676 1.6e-07 31.3 114.0 9 15 0.0011 1.1 9.4 4.0 6 34 426 461 425 465 0.89 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF418-205 - 676 1.6e-07 31.3 114.0 10 15 4.5e-05 0.045 13.9 3.4 6 34 482 517 481 522 0.92 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF418-205 - 676 1.6e-07 31.3 114.0 11 15 0.00089 0.89 9.7 6.0 6 34 538 573 537 575 0.92 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF418-205 - 676 1.6e-07 31.3 114.0 12 15 0.0003 0.3 11.2 6.6 6 38 566 602 565 604 0.86 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF418-205 - 676 1.6e-07 31.3 114.0 13 15 0.00025 0.25 11.5 6.7 6 35 591 627 590 632 0.84 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF418-205 - 676 1.6e-07 31.3 114.0 14 15 0.0027 2.7 8.2 7.3 6 38 619 658 618 659 0.84 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF418-205 - 676 1.6e-07 31.3 114.0 15 15 0.006 5.9 7.1 0.7 6 18 647 659 646 671 0.83 Zinc ribbon domain C1_1 PF00130.22 53 ZNF418-205 - 676 2.1e-07 30.7 73.8 1 14 1 1e+03 -0.3 0.2 10 21 80 91 76 113 0.70 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF418-205 - 676 2.1e-07 30.7 73.8 2 14 5 5e+03 -2.5 0.8 17 35 192 209 191 212 0.64 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF418-205 - 676 2.1e-07 30.7 73.8 3 14 0.021 21 5.1 2.8 1 38 216 267 216 270 0.78 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF418-205 - 676 2.1e-07 30.7 73.8 4 14 0.011 11 6.0 2.6 1 38 248 295 248 298 0.81 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF418-205 - 676 2.1e-07 30.7 73.8 5 14 0.027 27 4.8 1.6 1 35 276 320 276 323 0.69 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF418-205 - 676 2.1e-07 30.7 73.8 6 14 0.012 12 5.9 2.3 3 38 306 351 302 354 0.81 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF418-205 - 676 2.1e-07 30.7 73.8 7 14 0.035 35 4.4 6.1 3 38 334 379 332 383 0.85 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF418-205 - 676 2.1e-07 30.7 73.8 8 14 0.0046 4.6 7.2 1.7 1 37 388 434 388 438 0.85 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF418-205 - 676 2.1e-07 30.7 73.8 9 14 0.013 13 5.8 0.8 9 36 423 461 415 464 0.81 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF418-205 - 676 2.1e-07 30.7 73.8 10 14 0.034 34 4.4 1.2 5 34 448 487 443 489 0.70 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF418-205 - 676 2.1e-07 30.7 73.8 11 14 0.00023 0.23 11.4 1.3 2 43 473 524 468 526 0.84 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF418-205 - 676 2.1e-07 30.7 73.8 12 14 0.00024 0.24 11.3 1.0 3 40 502 549 500 551 0.86 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF418-205 - 676 2.1e-07 30.7 73.8 13 14 0.00041 0.41 10.6 0.3 5 37 559 599 556 603 0.83 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF418-205 - 676 2.1e-07 30.7 73.8 14 14 2e-05 0.02 14.8 0.2 3 40 607 658 605 660 0.82 Phorbol esters/diacylglycerol binding domain (C1 domain) # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF418-205.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF418-205.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF418-205.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF418-205.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF418-205.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:05:54 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF418-206.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF418-206.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF418-206.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF418-206.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF418-206.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:05:54 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF418-207.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF418-207.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF418-207.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF418-207.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF418-207.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:05:55 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZNF418-208 - 591 6.2e-121 390.0 146.6 1 18 0.0099 9.9 6.8 2.6 1 18 11 28 11 29 0.90 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF418-208 - 591 6.2e-121 390.0 146.6 2 18 9.9 9.8e+03 -2.7 9.5 15 25 133 155 93 156 0.65 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF418-208 - 591 6.2e-121 390.0 146.6 3 18 2e-10 2e-07 31.1 1.2 3 26 161 184 159 184 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF418-208 - 591 6.2e-121 390.0 146.6 4 18 2.3e-11 2.3e-08 34.1 0.7 1 26 187 212 187 212 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF418-208 - 591 6.2e-121 390.0 146.6 5 18 1.7e-11 1.7e-08 34.5 0.1 1 25 215 239 215 240 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF418-208 - 591 6.2e-121 390.0 146.6 6 18 6.3e-11 6.3e-08 32.7 1.6 2 25 244 267 243 268 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF418-208 - 591 6.2e-121 390.0 146.6 7 18 7e-10 6.9e-07 29.4 0.8 1 25 271 295 271 296 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF418-208 - 591 6.2e-121 390.0 146.6 8 18 1.8e-08 1.8e-05 25.0 1.9 2 25 300 323 299 324 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF418-208 - 591 6.2e-121 390.0 146.6 9 18 5.9e-11 5.9e-08 32.8 1.0 1 25 327 351 327 352 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF418-208 - 591 6.2e-121 390.0 146.6 10 18 5.8e-10 5.8e-07 29.7 0.7 1 24 355 378 355 379 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF418-208 - 591 6.2e-121 390.0 146.6 11 18 1.9e-10 1.9e-07 31.2 0.7 1 24 383 406 383 407 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF418-208 - 591 6.2e-121 390.0 146.6 12 18 1.8e-11 1.8e-08 34.4 0.5 2 24 412 434 411 436 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF418-208 - 591 6.2e-121 390.0 146.6 13 18 6.2e-11 6.2e-08 32.7 0.9 2 24 440 462 439 464 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF418-208 - 591 6.2e-121 390.0 146.6 14 18 2.2e-09 2.2e-06 27.8 2.0 2 26 468 492 467 492 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF418-208 - 591 6.2e-121 390.0 146.6 15 18 6.4e-11 6.4e-08 32.7 1.2 2 26 493 517 492 517 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF418-208 - 591 6.2e-121 390.0 146.6 16 18 1.7e-08 1.7e-05 25.0 1.6 4 25 523 544 522 545 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF418-208 - 591 6.2e-121 390.0 146.6 17 18 2.6e-11 2.6e-08 33.9 1.6 1 24 548 571 548 573 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF418-208 - 591 6.2e-121 390.0 146.6 18 18 0.0046 4.6 7.9 0.3 2 16 577 591 576 591 0.90 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZNF418-208 - 591 1e-86 280.8 141.5 1 18 8.4 8.4e+03 -2.4 0.3 15 23 11 19 2 20 0.82 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF418-208 - 591 1e-86 280.8 141.5 2 18 3 3e+03 -1.0 0.7 1 12 118 129 118 133 0.75 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF418-208 - 591 1e-86 280.8 141.5 3 18 1.2e-05 0.012 16.1 2.1 2 23 146 167 145 167 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF418-208 - 591 1e-86 280.8 141.5 4 18 2.6e-09 2.6e-06 27.6 0.8 1 23 173 195 173 195 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF418-208 - 591 1e-86 280.8 141.5 5 18 2.6e-09 2.6e-06 27.6 0.8 1 23 201 223 201 223 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF418-208 - 591 1e-86 280.8 141.5 6 18 2e-09 2e-06 27.9 0.2 1 23 229 251 229 251 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF418-208 - 591 1e-86 280.8 141.5 7 18 4.1e-09 4e-06 27.0 0.8 1 23 257 279 257 279 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF418-208 - 591 1e-86 280.8 141.5 8 18 9.3e-08 9.3e-05 22.7 3.0 1 23 285 307 285 307 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF418-208 - 591 1e-86 280.8 141.5 9 18 7.4e-10 7.4e-07 29.3 1.4 1 23 313 335 313 335 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF418-208 - 591 1e-86 280.8 141.5 10 18 3.4e-10 3.4e-07 30.4 0.3 1 23 341 363 341 363 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF418-208 - 591 1e-86 280.8 141.5 11 18 4.9e-06 0.0049 17.3 2.0 1 23 369 391 369 391 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF418-208 - 591 1e-86 280.8 141.5 12 18 1.6e-08 1.6e-05 25.1 0.4 1 23 397 419 397 419 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF418-208 - 591 1e-86 280.8 141.5 13 18 7.7e-08 7.7e-05 22.9 2.4 1 23 425 447 425 447 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF418-208 - 591 1e-86 280.8 141.5 14 18 1.3e-08 1.3e-05 25.4 2.1 1 23 453 475 453 475 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF418-208 - 591 1e-86 280.8 141.5 15 18 0.0013 1.3 9.6 1.3 1 23 481 500 481 500 0.91 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF418-208 - 591 1e-86 280.8 141.5 16 18 5.1e-06 0.005 17.2 4.1 1 23 506 528 506 528 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF418-208 - 591 1e-86 280.8 141.5 17 18 4.9e-07 0.00049 20.4 0.4 1 23 534 556 534 556 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF418-208 - 591 1e-86 280.8 141.5 18 18 9.4e-09 9.4e-06 25.8 2.7 1 23 562 584 562 584 0.98 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZNF418-208 - 591 3.9e-49 161.0 137.9 1 18 0.7 7e+02 1.6 0.1 6 24 2 20 1 20 0.89 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF418-208 - 591 3.9e-49 161.0 137.9 2 18 4.8 4.7e+03 -1.0 0.6 1 13 118 130 118 134 0.69 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF418-208 - 591 3.9e-49 161.0 137.9 3 18 0.0019 1.9 9.5 1.8 5 23 149 167 144 168 0.84 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF418-208 - 591 3.9e-49 161.0 137.9 4 18 1.7e-05 0.017 15.9 1.0 1 23 173 195 173 196 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF418-208 - 591 3.9e-49 161.0 137.9 5 18 1.7e-05 0.017 15.9 1.0 1 23 201 223 201 224 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF418-208 - 591 3.9e-49 161.0 137.9 6 18 5.7e-06 0.0057 17.4 0.2 1 23 229 251 229 252 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF418-208 - 591 3.9e-49 161.0 137.9 7 18 1.5e-05 0.015 16.1 0.9 1 23 257 279 257 280 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF418-208 - 591 3.9e-49 161.0 137.9 8 18 0.00013 0.13 13.2 3.0 1 23 285 307 285 308 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF418-208 - 591 3.9e-49 161.0 137.9 9 18 8.7e-07 0.00087 19.9 1.0 1 23 313 335 313 336 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF418-208 - 591 3.9e-49 161.0 137.9 10 18 9.6e-07 0.00096 19.8 0.3 1 23 341 363 341 364 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF418-208 - 591 3.9e-49 161.0 137.9 11 18 0.00051 0.51 11.3 1.7 1 23 369 391 369 392 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF418-208 - 591 3.9e-49 161.0 137.9 12 18 7.1e-06 0.0071 17.1 0.5 1 23 397 419 397 420 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF418-208 - 591 3.9e-49 161.0 137.9 13 18 2.6e-06 0.0026 18.5 2.8 1 23 425 447 425 448 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF418-208 - 591 3.9e-49 161.0 137.9 14 18 9.3e-07 0.00093 19.8 2.0 1 23 453 475 453 476 0.97 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF418-208 - 591 3.9e-49 161.0 137.9 15 18 0.0067 6.7 7.8 1.0 1 23 481 500 481 501 0.81 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF418-208 - 591 3.9e-49 161.0 137.9 16 18 0.00021 0.21 12.5 2.9 1 23 506 528 506 529 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF418-208 - 591 3.9e-49 161.0 137.9 17 18 5.3e-05 0.052 14.4 0.6 1 23 534 556 534 557 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF418-208 - 591 3.9e-49 161.0 137.9 18 18 1.7e-06 0.0017 19.0 2.5 1 23 562 584 562 585 0.96 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF418-208 - 591 3.9e-20 71.4 128.7 1 16 0.0014 1.4 9.0 0.6 4 16 147 159 147 168 0.84 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF418-208 - 591 3.9e-20 71.4 128.7 2 16 0.0025 2.5 8.2 0.7 2 12 173 183 173 195 0.90 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF418-208 - 591 3.9e-20 71.4 128.7 3 16 0.0025 2.5 8.2 0.7 2 12 201 211 201 223 0.90 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF418-208 - 591 3.9e-20 71.4 128.7 4 16 0.0016 1.6 8.8 0.4 2 12 229 239 229 252 0.83 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF418-208 - 591 3.9e-20 71.4 128.7 5 16 0.04 40 4.4 2.3 2 23 257 278 257 282 0.77 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF418-208 - 591 3.9e-20 71.4 128.7 6 16 0.077 77 3.5 2.4 2 12 285 295 285 309 0.86 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF418-208 - 591 3.9e-20 71.4 128.7 7 16 0.017 17 5.5 4.7 2 13 313 324 313 335 0.78 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF418-208 - 591 3.9e-20 71.4 128.7 8 16 1.6e-05 0.016 15.2 1.1 2 24 341 363 341 366 0.95 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF418-208 - 591 3.9e-20 71.4 128.7 9 16 0.053 52 4.0 0.6 2 12 369 379 369 391 0.87 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF418-208 - 591 3.9e-20 71.4 128.7 10 16 0.00024 0.24 11.5 1.1 2 12 397 407 397 407 0.96 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF418-208 - 591 3.9e-20 71.4 128.7 11 16 5.2e-05 0.052 13.6 1.7 2 24 425 447 425 450 0.80 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF418-208 - 591 3.9e-20 71.4 128.7 12 16 0.00097 0.97 9.5 3.7 2 25 453 476 453 478 0.92 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF418-208 - 591 3.9e-20 71.4 128.7 13 16 0.0031 3.1 7.9 0.5 2 14 481 493 481 499 0.95 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF418-208 - 591 3.9e-20 71.4 128.7 14 16 0.0023 2.3 8.3 1.0 2 12 506 516 506 524 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF418-208 - 591 3.9e-20 71.4 128.7 15 16 3.4e-06 0.0034 17.3 0.8 2 24 534 556 534 559 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF418-208 - 591 3.9e-20 71.4 128.7 16 16 5e-05 0.05 13.6 1.9 2 20 562 580 562 586 0.80 C2H2-type zinc finger zf-C2H2_jaz PF12171.8 27 ZNF418-208 - 591 1.9e-18 66.2 67.8 1 17 3.7 3.7e+03 -1.6 0.3 2 18 118 134 117 135 0.81 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF418-208 - 591 1.9e-18 66.2 67.8 2 17 0.54 5.4e+02 1.1 0.5 3 20 146 163 146 165 0.79 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF418-208 - 591 1.9e-18 66.2 67.8 3 17 0.0015 1.5 9.2 0.0 2 22 173 193 172 193 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF418-208 - 591 1.9e-18 66.2 67.8 4 17 0.0015 1.5 9.2 0.0 2 22 201 221 200 221 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF418-208 - 591 1.9e-18 66.2 67.8 5 17 0.026 25 5.3 0.0 2 22 229 249 228 249 0.89 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF418-208 - 591 1.9e-18 66.2 67.8 6 17 0.082 82 3.7 0.6 2 24 257 279 256 279 0.89 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF418-208 - 591 1.9e-18 66.2 67.8 7 17 0.33 3.3e+02 1.7 0.5 2 20 285 303 284 303 0.73 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF418-208 - 591 1.9e-18 66.2 67.8 8 17 0.0002 0.2 12.0 0.1 2 24 313 335 312 335 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF418-208 - 591 1.9e-18 66.2 67.8 9 17 0.00022 0.22 11.9 0.1 2 24 341 363 340 363 0.95 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF418-208 - 591 1.9e-18 66.2 67.8 10 17 0.034 34 4.9 0.1 2 22 369 389 368 389 0.91 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF418-208 - 591 1.9e-18 66.2 67.8 11 17 0.00077 0.76 10.1 0.1 2 22 397 417 396 417 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF418-208 - 591 1.9e-18 66.2 67.8 12 17 0.11 1.1e+02 3.3 0.2 2 11 425 434 424 445 0.86 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF418-208 - 591 1.9e-18 66.2 67.8 13 17 0.00072 0.72 10.2 0.5 2 24 453 475 452 475 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF418-208 - 591 1.9e-18 66.2 67.8 14 17 0.15 1.5e+02 2.8 0.1 2 13 481 492 480 495 0.91 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF418-208 - 591 1.9e-18 66.2 67.8 15 17 0.064 63 4.0 0.2 2 17 506 521 505 526 0.79 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF418-208 - 591 1.9e-18 66.2 67.8 16 17 0.034 33 4.9 0.0 2 21 534 553 533 554 0.84 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF418-208 - 591 1.9e-18 66.2 67.8 17 17 0.00025 0.25 11.7 0.1 2 22 562 582 561 582 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_11 PF16622.5 29 ZNF418-208 - 591 1.8e-13 50.0 89.7 1 16 0.062 62 3.5 0.7 5 24 145 164 144 167 0.81 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF418-208 - 591 1.8e-13 50.0 89.7 2 16 0.00082 0.81 9.5 0.4 7 25 175 193 172 195 0.90 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF418-208 - 591 1.8e-13 50.0 89.7 3 16 0.00082 0.81 9.5 0.4 7 25 203 221 200 223 0.90 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF418-208 - 591 1.8e-13 50.0 89.7 4 16 0.0036 3.6 7.4 0.1 7 25 231 249 228 251 0.90 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF418-208 - 591 1.8e-13 50.0 89.7 5 16 0.00013 0.12 12.1 0.2 6 23 258 275 256 277 0.89 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF418-208 - 591 1.8e-13 50.0 89.7 6 16 9.2e-05 0.091 12.5 0.5 6 25 286 305 284 307 0.89 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF418-208 - 591 1.8e-13 50.0 89.7 7 16 0.011 11 5.9 0.5 7 23 315 331 312 333 0.90 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF418-208 - 591 1.8e-13 50.0 89.7 8 16 0.038 38 4.2 0.1 7 23 343 359 340 361 0.87 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF418-208 - 591 1.8e-13 50.0 89.7 9 16 5.3 5.2e+03 -2.7 0.4 7 11 371 375 369 378 0.78 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF418-208 - 591 1.8e-13 50.0 89.7 10 16 0.88 8.8e+02 -0.2 0.1 6 14 398 406 396 410 0.84 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF418-208 - 591 1.8e-13 50.0 89.7 11 16 0.00056 0.56 10.0 2.0 6 26 426 446 423 447 0.92 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF418-208 - 591 1.8e-13 50.0 89.7 12 16 0.02 20 5.0 1.1 7 23 455 471 452 473 0.92 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF418-208 - 591 1.8e-13 50.0 89.7 13 16 0.011 11 5.9 0.1 6 17 482 493 480 499 0.85 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF418-208 - 591 1.8e-13 50.0 89.7 14 16 0.031 30 4.5 0.2 6 15 507 516 505 525 0.88 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF418-208 - 591 1.8e-13 50.0 89.7 15 16 0.00053 0.53 10.1 0.1 6 26 535 555 533 556 0.91 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF418-208 - 591 1.8e-13 50.0 89.7 16 16 0.01 10 6.0 2.2 6 25 563 582 561 584 0.90 zinc-finger C2H2-type zf_UBZ PF18439.1 32 ZNF418-208 - 591 4.3e-13 48.6 94.0 1 18 4.6 4.6e+03 -2.7 0.1 7 15 64 72 63 73 0.82 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF418-208 - 591 4.3e-13 48.6 94.0 2 18 0.089 88 2.8 0.3 2 12 117 127 116 130 0.84 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF418-208 - 591 4.3e-13 48.6 94.0 3 18 0.21 2.1e+02 1.6 0.5 5 15 147 157 144 164 0.80 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF418-208 - 591 4.3e-13 48.6 94.0 4 18 0.0035 3.5 7.3 0.2 3 21 173 192 171 192 0.85 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF418-208 - 591 4.3e-13 48.6 94.0 5 18 0.0035 3.5 7.3 0.2 3 21 201 220 199 220 0.85 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF418-208 - 591 4.3e-13 48.6 94.0 6 18 0.0047 4.7 6.9 0.1 3 18 229 245 227 248 0.79 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF418-208 - 591 4.3e-13 48.6 94.0 7 18 0.0072 7.2 6.3 1.2 3 20 257 275 255 276 0.79 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF418-208 - 591 4.3e-13 48.6 94.0 8 18 0.00073 0.73 9.5 2.4 3 20 285 303 283 304 0.93 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF418-208 - 591 4.3e-13 48.6 94.0 9 18 0.014 14 5.4 0.1 3 14 313 324 311 332 0.83 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF418-208 - 591 4.3e-13 48.6 94.0 10 18 0.007 6.9 6.4 0.1 3 20 341 359 339 360 0.80 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF418-208 - 591 4.3e-13 48.6 94.0 11 18 0.43 4.3e+02 0.6 0.4 3 20 369 387 368 388 0.74 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF418-208 - 591 4.3e-13 48.6 94.0 12 18 0.0087 8.6 6.0 0.1 3 15 397 409 395 416 0.86 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF418-208 - 591 4.3e-13 48.6 94.0 13 18 0.00052 0.52 9.9 0.8 3 20 425 443 423 444 0.84 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF418-208 - 591 4.3e-13 48.6 94.0 14 18 0.0044 4.4 7.0 0.2 3 20 453 471 451 472 0.84 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF418-208 - 591 4.3e-13 48.6 94.0 15 18 0.012 12 5.6 0.2 3 20 481 496 479 497 0.83 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF418-208 - 591 4.3e-13 48.6 94.0 16 18 0.05 50 3.6 0.1 3 12 506 515 504 520 0.88 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF418-208 - 591 4.3e-13 48.6 94.0 17 18 1.6e-05 0.016 14.8 0.2 3 20 534 552 532 553 0.94 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF418-208 - 591 4.3e-13 48.6 94.0 18 18 0.0015 1.5 8.4 0.3 3 20 562 580 560 581 0.81 Ubiquitin-Binding Zinc Finger zf-met PF12874.7 25 ZNF418-208 - 591 1.4e-09 38.0 91.0 1 15 0.00078 0.78 10.2 0.4 1 21 173 193 173 195 0.93 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF418-208 - 591 1.4e-09 38.0 91.0 2 15 0.00078 0.78 10.2 0.4 1 21 201 221 201 223 0.93 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF418-208 - 591 1.4e-09 38.0 91.0 3 15 0.013 13 6.3 0.2 1 21 229 249 229 251 0.92 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF418-208 - 591 1.4e-09 38.0 91.0 4 15 0.00019 0.19 12.2 1.4 1 23 257 279 257 280 0.95 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF418-208 - 591 1.4e-09 38.0 91.0 5 15 0.5 5e+02 1.3 1.8 1 19 285 303 285 307 0.88 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF418-208 - 591 1.4e-09 38.0 91.0 6 15 2.5e-05 0.025 14.9 0.7 1 23 313 335 313 336 0.95 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF418-208 - 591 1.4e-09 38.0 91.0 7 15 3.7e-05 0.037 14.4 0.6 1 23 341 363 341 364 0.95 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF418-208 - 591 1.4e-09 38.0 91.0 8 15 0.0057 5.6 7.5 0.3 1 21 369 389 369 391 0.93 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF418-208 - 591 1.4e-09 38.0 91.0 9 15 0.02 20 5.7 0.3 1 20 397 416 397 419 0.91 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF418-208 - 591 1.4e-09 38.0 91.0 10 15 0.24 2.4e+02 2.3 0.4 1 19 425 443 425 445 0.86 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF418-208 - 591 1.4e-09 38.0 91.0 11 15 0.91 9.1e+02 0.5 0.8 1 20 453 472 453 476 0.81 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF418-208 - 591 1.4e-09 38.0 91.0 12 15 1.4 1.4e+03 -0.2 0.3 1 12 481 492 481 493 0.92 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF418-208 - 591 1.4e-09 38.0 91.0 13 15 0.0056 5.6 7.5 0.3 1 20 506 525 506 526 0.90 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF418-208 - 591 1.4e-09 38.0 91.0 14 15 0.89 8.9e+02 0.5 0.1 1 10 534 543 534 544 0.90 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF418-208 - 591 1.4e-09 38.0 91.0 15 15 0.18 1.8e+02 2.7 0.9 1 20 562 581 562 584 0.90 Zinc-finger of C2H2 type C1_1 PF00130.22 53 ZNF418-208 - 591 7.2e-09 35.4 69.8 1 13 4.3 4.3e+03 -2.3 0.8 17 35 107 124 106 127 0.64 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF418-208 - 591 7.2e-09 35.4 69.8 2 13 0.024 24 4.9 3.2 1 38 131 182 131 185 0.78 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF418-208 - 591 7.2e-09 35.4 69.8 3 13 0.0096 9.6 6.2 2.7 1 38 163 210 163 213 0.81 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF418-208 - 591 7.2e-09 35.4 69.8 4 13 0.031 31 4.6 1.3 1 22 191 218 191 235 0.65 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF418-208 - 591 7.2e-09 35.4 69.8 5 13 0.012 12 5.8 2.6 3 38 221 266 218 269 0.80 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF418-208 - 591 7.2e-09 35.4 69.8 6 13 0.045 45 4.0 6.7 2 38 248 294 245 297 0.85 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF418-208 - 591 7.2e-09 35.4 69.8 7 13 0.0039 3.9 7.4 1.8 1 37 303 349 303 353 0.85 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF418-208 - 591 7.2e-09 35.4 69.8 8 13 0.012 12 5.9 0.9 9 36 338 376 330 379 0.81 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF418-208 - 591 7.2e-09 35.4 69.8 9 13 0.075 75 3.3 0.1 5 25 363 382 358 385 0.74 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF418-208 - 591 7.2e-09 35.4 69.8 10 13 0.00021 0.2 11.5 1.3 2 42 388 438 383 440 0.84 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF418-208 - 591 7.2e-09 35.4 69.8 11 13 0.00021 0.2 11.5 1.0 3 40 417 464 415 466 0.86 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF418-208 - 591 7.2e-09 35.4 69.8 12 13 0.00037 0.36 10.7 0.4 5 37 474 514 471 518 0.83 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF418-208 - 591 7.2e-09 35.4 69.8 13 13 1.7e-05 0.017 15.0 0.2 3 40 522 573 520 575 0.82 Phorbol esters/diacylglycerol binding domain (C1 domain) Zn-ribbon_8 PF09723.10 40 ZNF418-208 - 591 8.8e-09 35.3 111.0 1 14 0.79 7.9e+02 0.3 4.5 6 37 118 155 117 157 0.61 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF418-208 - 591 8.8e-09 35.3 111.0 2 14 0.0011 1.1 9.4 5.3 6 34 173 208 172 213 0.91 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF418-208 - 591 8.8e-09 35.3 111.0 3 14 0.00084 0.84 9.8 5.3 6 35 201 237 200 241 0.90 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF418-208 - 591 8.8e-09 35.3 111.0 4 14 0.0015 1.5 9.0 8.4 6 34 229 264 228 270 0.90 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF418-208 - 591 8.8e-09 35.3 111.0 5 14 0.18 1.8e+02 2.3 14.0 6 34 257 292 256 297 0.87 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF418-208 - 591 8.8e-09 35.3 111.0 6 14 0.024 24 5.2 10.7 6 38 285 324 284 326 0.87 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF418-208 - 591 8.8e-09 35.3 111.0 7 14 0.012 12 6.1 0.5 6 16 313 323 312 334 0.87 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF418-208 - 591 8.8e-09 35.3 111.0 8 14 0.0008 0.8 9.9 3.8 6 34 341 376 340 381 0.89 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF418-208 - 591 8.8e-09 35.3 111.0 9 14 3.8e-05 0.038 14.1 3.4 6 34 397 432 396 437 0.92 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF418-208 - 591 8.8e-09 35.3 111.0 10 14 0.00071 0.71 10.0 6.0 6 34 453 488 452 491 0.92 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF418-208 - 591 8.8e-09 35.3 111.0 11 14 0.00023 0.23 11.6 6.4 6 38 481 517 480 520 0.86 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF418-208 - 591 8.8e-09 35.3 111.0 12 14 0.00025 0.25 11.5 6.7 6 34 506 541 505 545 0.85 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF418-208 - 591 8.8e-09 35.3 111.0 13 14 0.0022 2.2 8.5 7.3 6 38 534 573 533 574 0.84 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF418-208 - 591 8.8e-09 35.3 111.0 14 14 0.0051 5.1 7.3 0.6 6 17 562 573 561 585 0.84 Zinc ribbon domain # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF418-208.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF418-208.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF418-208.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF418-208.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF418-208.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:05:55 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF418-209.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF418-209.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF418-209.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF418-209.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF418-209.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:05:56 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- KRAB PF01352.27 42 ZNF418-210 - 128 2e-20 72.1 0.8 1 1 1.5e-24 2.8e-20 71.7 0.8 2 42 5 45 4 45 0.98 KRAB box # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF418-210.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF418-210.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF418-210.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF418-210.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF418-210.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:05:56 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF418-211.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF418-211.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF418-211.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF418-211.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF418-211.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:05:56 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZNF418-212 - 676 1.4e-118 382.6 150.8 1 18 6.5 6.4e+03 -2.1 0.2 11 21 78 88 77 89 0.80 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF418-212 - 676 1.4e-118 382.6 150.8 2 18 0.012 12 6.6 2.6 1 18 96 113 96 114 0.90 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF418-212 - 676 1.4e-118 382.6 150.8 3 18 2.4e-10 2.4e-07 30.9 1.2 3 26 246 269 244 269 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF418-212 - 676 1.4e-118 382.6 150.8 4 18 2.7e-11 2.7e-08 33.9 0.7 1 26 272 297 272 297 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF418-212 - 676 1.4e-118 382.6 150.8 5 18 2e-11 2e-08 34.3 0.1 1 25 300 324 300 325 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF418-212 - 676 1.4e-118 382.6 150.8 6 18 7.4e-11 7.4e-08 32.5 1.6 2 25 329 352 328 353 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF418-212 - 676 1.4e-118 382.6 150.8 7 18 8.2e-10 8.1e-07 29.2 0.8 1 25 356 380 356 381 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF418-212 - 676 1.4e-118 382.6 150.8 8 18 2.1e-08 2.1e-05 24.8 1.9 2 25 385 408 384 409 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF418-212 - 676 1.4e-118 382.6 150.8 9 18 6.9e-11 6.9e-08 32.6 1.0 1 25 412 436 412 437 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF418-212 - 676 1.4e-118 382.6 150.8 10 18 6.8e-10 6.8e-07 29.4 0.7 1 24 440 463 440 464 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF418-212 - 676 1.4e-118 382.6 150.8 11 18 2.3e-10 2.2e-07 31.0 0.7 1 24 468 491 468 492 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF418-212 - 676 1.4e-118 382.6 150.8 12 18 2.1e-11 2.1e-08 34.2 0.5 2 24 497 519 496 521 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF418-212 - 676 1.4e-118 382.6 150.8 13 18 7.3e-11 7.3e-08 32.5 0.9 2 24 525 547 524 549 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF418-212 - 676 1.4e-118 382.6 150.8 14 18 2.6e-09 2.6e-06 27.6 2.0 2 26 553 577 552 577 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF418-212 - 676 1.4e-118 382.6 150.8 15 18 7.6e-11 7.5e-08 32.5 1.2 2 26 578 602 577 602 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF418-212 - 676 1.4e-118 382.6 150.8 16 18 2e-08 2e-05 24.8 1.6 4 25 608 629 607 630 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF418-212 - 676 1.4e-118 382.6 150.8 17 18 3.1e-11 3.1e-08 33.7 1.6 1 24 633 656 633 658 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF418-212 - 676 1.4e-118 382.6 150.8 18 18 0.0053 5.3 7.6 0.3 2 16 662 676 661 676 0.90 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZNF418-212 - 676 1.8e-86 280.0 142.6 1 18 0.23 2.3e+02 2.6 0.6 1 23 82 104 82 105 0.90 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF418-212 - 676 1.8e-86 280.0 142.6 2 18 3.5 3.5e+03 -1.2 0.7 1 12 203 214 203 218 0.75 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF418-212 - 676 1.8e-86 280.0 142.6 3 18 1.4e-05 0.014 15.9 2.1 2 23 231 252 230 252 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF418-212 - 676 1.8e-86 280.0 142.6 4 18 3e-09 3e-06 27.4 0.8 1 23 258 280 258 280 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF418-212 - 676 1.8e-86 280.0 142.6 5 18 3e-09 3e-06 27.4 0.8 1 23 286 308 286 308 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF418-212 - 676 1.8e-86 280.0 142.6 6 18 2.3e-09 2.3e-06 27.7 0.2 1 23 314 336 314 336 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF418-212 - 676 1.8e-86 280.0 142.6 7 18 4.8e-09 4.7e-06 26.7 0.8 1 23 342 364 342 364 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF418-212 - 676 1.8e-86 280.0 142.6 8 18 1.1e-07 0.00011 22.5 3.0 1 23 370 392 370 392 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF418-212 - 676 1.8e-86 280.0 142.6 9 18 8.7e-10 8.7e-07 29.1 1.4 1 23 398 420 398 420 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF418-212 - 676 1.8e-86 280.0 142.6 10 18 4e-10 4e-07 30.1 0.3 1 23 426 448 426 448 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF418-212 - 676 1.8e-86 280.0 142.6 11 18 5.8e-06 0.0057 17.0 2.0 1 23 454 476 454 476 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF418-212 - 676 1.8e-86 280.0 142.6 12 18 1.8e-08 1.8e-05 24.9 0.4 1 23 482 504 482 504 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF418-212 - 676 1.8e-86 280.0 142.6 13 18 9e-08 9e-05 22.7 2.4 1 23 510 532 510 532 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF418-212 - 676 1.8e-86 280.0 142.6 14 18 1.5e-08 1.5e-05 25.2 2.1 1 23 538 560 538 560 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF418-212 - 676 1.8e-86 280.0 142.6 15 18 0.0015 1.5 9.4 1.3 1 23 566 585 566 585 0.91 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF418-212 - 676 1.8e-86 280.0 142.6 16 18 5.9e-06 0.0059 17.0 4.1 1 23 591 613 591 613 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF418-212 - 676 1.8e-86 280.0 142.6 17 18 5.7e-07 0.00057 20.2 0.4 1 23 619 641 619 641 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF418-212 - 676 1.8e-86 280.0 142.6 18 18 1.1e-08 1.1e-05 25.6 2.7 1 23 647 669 647 669 0.98 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZNF418-212 - 676 3.1e-49 161.4 140.7 1 18 0.0068 6.8 7.8 0.6 1 24 82 105 82 105 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF418-212 - 676 3.1e-49 161.4 140.7 2 18 5.5 5.5e+03 -1.2 0.6 1 13 203 215 203 219 0.69 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF418-212 - 676 3.1e-49 161.4 140.7 3 18 0.0022 2.2 9.3 1.8 5 23 234 252 229 253 0.84 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF418-212 - 676 3.1e-49 161.4 140.7 4 18 2e-05 0.019 15.7 1.0 1 23 258 280 258 281 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF418-212 - 676 3.1e-49 161.4 140.7 5 18 2e-05 0.019 15.7 1.0 1 23 286 308 286 309 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF418-212 - 676 3.1e-49 161.4 140.7 6 18 6.7e-06 0.0067 17.2 0.2 1 23 314 336 314 337 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF418-212 - 676 3.1e-49 161.4 140.7 7 18 1.8e-05 0.018 15.8 0.9 1 23 342 364 342 365 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF418-212 - 676 3.1e-49 161.4 140.7 8 18 0.00015 0.15 12.9 3.0 1 23 370 392 370 393 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF418-212 - 676 3.1e-49 161.4 140.7 9 18 1e-06 0.001 19.7 1.0 1 23 398 420 398 421 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF418-212 - 676 3.1e-49 161.4 140.7 10 18 1.1e-06 0.0011 19.6 0.3 1 23 426 448 426 449 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF418-212 - 676 3.1e-49 161.4 140.7 11 18 0.0006 0.6 11.1 1.7 1 23 454 476 454 477 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF418-212 - 676 3.1e-49 161.4 140.7 12 18 8.3e-06 0.0083 16.9 0.5 1 23 482 504 482 505 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF418-212 - 676 3.1e-49 161.4 140.7 13 18 3.1e-06 0.003 18.2 2.8 1 23 510 532 510 533 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF418-212 - 676 3.1e-49 161.4 140.7 14 18 1.1e-06 0.0011 19.6 2.0 1 23 538 560 538 561 0.97 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF418-212 - 676 3.1e-49 161.4 140.7 15 18 0.0078 7.8 7.6 1.0 1 23 566 585 566 586 0.81 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF418-212 - 676 3.1e-49 161.4 140.7 16 18 0.00025 0.25 12.3 2.9 1 23 591 613 591 614 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF418-212 - 676 3.1e-49 161.4 140.7 17 18 6.2e-05 0.061 14.2 0.6 1 23 619 641 619 642 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF418-212 - 676 3.1e-49 161.4 140.7 18 18 2e-06 0.002 18.8 2.5 1 23 647 669 647 670 0.96 C2H2-type zinc finger KRAB PF01352.27 42 ZNF418-212 - 676 1.9e-19 69.0 0.8 1 1 3.5e-22 3.5e-19 68.2 0.8 2 42 5 45 4 45 0.97 KRAB box zf-C2H2_6 PF13912.6 27 ZNF418-212 - 676 5.6e-19 67.7 129.2 1 16 0.0016 1.6 8.8 0.6 4 16 232 244 232 253 0.84 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF418-212 - 676 5.6e-19 67.7 129.2 2 16 0.0029 2.9 8.0 0.7 2 12 258 268 258 280 0.90 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF418-212 - 676 5.6e-19 67.7 129.2 3 16 0.0029 2.9 8.0 0.7 2 12 286 296 286 308 0.90 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF418-212 - 676 5.6e-19 67.7 129.2 4 16 0.0018 1.8 8.6 0.4 2 12 314 324 314 337 0.83 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF418-212 - 676 5.6e-19 67.7 129.2 5 16 0.047 47 4.1 2.3 2 23 342 363 342 367 0.77 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF418-212 - 676 5.6e-19 67.7 129.2 6 16 0.1 1e+02 3.1 2.5 2 12 370 380 370 393 0.87 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF418-212 - 676 5.6e-19 67.7 129.2 7 16 0.019 19 5.4 4.6 2 13 398 409 398 420 0.78 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF418-212 - 676 5.6e-19 67.7 129.2 8 16 1.8e-05 0.018 15.0 1.1 2 24 426 448 426 451 0.95 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF418-212 - 676 5.6e-19 67.7 129.2 9 16 0.061 61 3.8 0.6 2 12 454 464 454 476 0.87 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF418-212 - 676 5.6e-19 67.7 129.2 10 16 0.00028 0.28 11.3 1.1 2 12 482 492 482 492 0.96 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF418-212 - 676 5.6e-19 67.7 129.2 11 16 6.1e-05 0.06 13.4 1.7 2 24 510 532 510 535 0.80 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF418-212 - 676 5.6e-19 67.7 129.2 12 16 0.0011 1.1 9.3 3.7 2 25 538 561 538 563 0.92 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF418-212 - 676 5.6e-19 67.7 129.2 13 16 0.0041 4 7.5 0.7 2 14 566 578 566 583 0.95 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF418-212 - 676 5.6e-19 67.7 129.2 14 16 0.0026 2.6 8.1 1.0 2 12 591 601 591 609 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF418-212 - 676 5.6e-19 67.7 129.2 15 16 4e-06 0.004 17.1 0.8 2 24 619 641 619 644 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF418-212 - 676 5.6e-19 67.7 129.2 16 16 5.8e-05 0.058 13.4 1.9 2 20 647 665 647 671 0.80 C2H2-type zinc finger zf-C2H2_jaz PF12171.8 27 ZNF418-212 - 676 1.7e-17 63.2 67.8 1 17 4.3 4.3e+03 -1.8 0.3 2 18 203 219 202 220 0.81 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF418-212 - 676 1.7e-17 63.2 67.8 2 17 0.63 6.2e+02 0.9 0.5 3 20 231 248 231 250 0.78 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF418-212 - 676 1.7e-17 63.2 67.8 3 17 0.0017 1.7 9.0 0.0 2 22 258 278 257 278 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF418-212 - 676 1.7e-17 63.2 67.8 4 17 0.0017 1.7 9.0 0.0 2 22 286 306 285 306 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF418-212 - 676 1.7e-17 63.2 67.8 5 17 0.03 30 5.1 0.0 2 22 314 334 313 334 0.89 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF418-212 - 676 1.7e-17 63.2 67.8 6 17 0.096 96 3.4 0.6 2 24 342 364 341 364 0.89 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF418-212 - 676 1.7e-17 63.2 67.8 7 17 0.38 3.8e+02 1.5 0.5 2 20 370 388 369 388 0.73 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF418-212 - 676 1.7e-17 63.2 67.8 8 17 0.00024 0.24 11.7 0.1 2 24 398 420 397 420 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF418-212 - 676 1.7e-17 63.2 67.8 9 17 0.00025 0.25 11.7 0.1 2 24 426 448 425 448 0.95 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF418-212 - 676 1.7e-17 63.2 67.8 10 17 0.04 40 4.7 0.1 2 22 454 474 453 474 0.91 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF418-212 - 676 1.7e-17 63.2 67.8 11 17 0.00089 0.89 9.9 0.1 2 22 482 502 481 502 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF418-212 - 676 1.7e-17 63.2 67.8 12 17 0.13 1.3e+02 3.1 0.2 2 11 510 519 509 530 0.86 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF418-212 - 676 1.7e-17 63.2 67.8 13 17 0.00085 0.84 10.0 0.5 2 24 538 560 537 560 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF418-212 - 676 1.7e-17 63.2 67.8 14 17 0.18 1.8e+02 2.6 0.1 2 13 566 577 565 580 0.91 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF418-212 - 676 1.7e-17 63.2 67.8 15 17 0.074 74 3.8 0.2 2 17 591 606 590 611 0.79 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF418-212 - 676 1.7e-17 63.2 67.8 16 17 0.039 39 4.7 0.0 2 21 619 638 618 639 0.84 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF418-212 - 676 1.7e-17 63.2 67.8 17 17 0.00029 0.29 11.5 0.1 2 22 647 667 646 667 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_11 PF16622.5 29 ZNF418-212 - 676 4.8e-11 42.2 95.0 1 17 7.5 7.5e+03 -3.2 0.2 4 11 81 88 80 89 0.79 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF418-212 - 676 4.8e-11 42.2 95.0 2 17 0.073 72 3.3 0.7 5 24 230 249 229 252 0.81 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF418-212 - 676 4.8e-11 42.2 95.0 3 17 0.00095 0.95 9.3 0.4 7 25 260 278 257 280 0.90 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF418-212 - 676 4.8e-11 42.2 95.0 4 17 0.00095 0.95 9.3 0.4 7 25 288 306 285 308 0.90 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF418-212 - 676 4.8e-11 42.2 95.0 5 17 0.0042 4.2 7.2 0.1 7 25 316 334 313 336 0.90 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF418-212 - 676 4.8e-11 42.2 95.0 6 17 0.00015 0.15 11.9 0.2 6 23 343 360 341 362 0.89 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF418-212 - 676 4.8e-11 42.2 95.0 7 17 0.00011 0.11 12.3 0.5 6 25 371 390 369 392 0.89 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF418-212 - 676 4.8e-11 42.2 95.0 8 17 0.013 12 5.7 0.5 7 23 400 416 397 418 0.90 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF418-212 - 676 4.8e-11 42.2 95.0 9 17 0.044 44 4.0 0.1 7 23 428 444 425 446 0.87 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF418-212 - 676 4.8e-11 42.2 95.0 10 17 6.1 6.1e+03 -2.9 0.4 7 11 456 460 454 463 0.78 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF418-212 - 676 4.8e-11 42.2 95.0 11 17 1 1e+03 -0.4 0.1 6 14 483 491 481 495 0.84 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF418-212 - 676 4.8e-11 42.2 95.0 12 17 0.00066 0.65 9.8 2.0 6 26 511 531 508 532 0.92 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF418-212 - 676 4.8e-11 42.2 95.0 13 17 0.024 24 4.8 1.1 7 23 540 556 537 558 0.92 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF418-212 - 676 4.8e-11 42.2 95.0 14 17 0.013 13 5.7 0.1 6 17 567 578 565 584 0.85 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF418-212 - 676 4.8e-11 42.2 95.0 15 17 0.035 35 4.3 0.2 6 15 592 601 590 610 0.88 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF418-212 - 676 4.8e-11 42.2 95.0 16 17 0.00062 0.61 9.9 0.1 6 26 620 640 618 641 0.91 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF418-212 - 676 4.8e-11 42.2 95.0 17 17 0.012 12 5.7 2.2 6 25 648 667 646 669 0.90 zinc-finger C2H2-type zf_UBZ PF18439.1 32 ZNF418-212 - 676 7.9e-11 41.4 98.4 1 19 5.8 5.8e+03 -3.0 0.1 4 10 83 89 81 90 0.82 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF418-212 - 676 7.9e-11 41.4 98.4 2 19 5.4 5.4e+03 -2.9 0.1 7 15 149 157 148 158 0.82 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF418-212 - 676 7.9e-11 41.4 98.4 3 19 0.1 1e+02 2.6 0.3 2 12 202 212 201 215 0.84 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF418-212 - 676 7.9e-11 41.4 98.4 4 19 0.24 2.4e+02 1.4 0.5 5 15 232 242 229 249 0.80 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF418-212 - 676 7.9e-11 41.4 98.4 5 19 0.0041 4 7.1 0.2 3 21 258 277 256 277 0.85 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF418-212 - 676 7.9e-11 41.4 98.4 6 19 0.0041 4 7.1 0.2 3 21 286 305 284 305 0.85 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF418-212 - 676 7.9e-11 41.4 98.4 7 19 0.0055 5.5 6.7 0.1 3 18 314 330 312 333 0.79 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF418-212 - 676 7.9e-11 41.4 98.4 8 19 0.0084 8.3 6.1 1.2 3 20 342 360 340 361 0.79 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF418-212 - 676 7.9e-11 41.4 98.4 9 19 0.00086 0.85 9.3 2.4 3 20 370 388 368 389 0.93 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF418-212 - 676 7.9e-11 41.4 98.4 10 19 0.016 16 5.2 0.1 3 14 398 409 396 417 0.83 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF418-212 - 676 7.9e-11 41.4 98.4 11 19 0.0081 8.1 6.1 0.1 3 20 426 444 424 445 0.80 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF418-212 - 676 7.9e-11 41.4 98.4 12 19 0.5 5e+02 0.4 0.4 3 20 454 472 453 473 0.74 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF418-212 - 676 7.9e-11 41.4 98.4 13 19 0.01 10 5.8 0.1 3 15 482 494 480 501 0.86 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF418-212 - 676 7.9e-11 41.4 98.4 14 19 0.00061 0.61 9.7 0.8 3 20 510 528 508 529 0.84 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF418-212 - 676 7.9e-11 41.4 98.4 15 19 0.0051 5.1 6.8 0.2 3 20 538 556 536 557 0.84 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF418-212 - 676 7.9e-11 41.4 98.4 16 19 0.014 14 5.4 0.2 3 20 566 581 564 582 0.83 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF418-212 - 676 7.9e-11 41.4 98.4 17 19 0.064 63 3.3 0.2 3 12 591 600 589 604 0.88 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF418-212 - 676 7.9e-11 41.4 98.4 18 19 1.8e-05 0.018 14.6 0.2 3 20 619 637 617 638 0.94 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF418-212 - 676 7.9e-11 41.4 98.4 19 19 0.0018 1.8 8.2 0.3 3 20 647 665 645 666 0.81 Ubiquitin-Binding Zinc Finger zf-met PF12874.7 25 ZNF418-212 - 676 2.9e-08 33.8 94.1 1 16 1.5 1.4e+03 -0.2 0.0 2 19 83 100 82 102 0.74 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF418-212 - 676 2.9e-08 33.8 94.1 2 16 0.00091 0.91 10.0 0.4 1 21 258 278 258 280 0.93 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF418-212 - 676 2.9e-08 33.8 94.1 3 16 0.00091 0.91 10.0 0.4 1 21 286 306 286 308 0.93 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF418-212 - 676 2.9e-08 33.8 94.1 4 16 0.015 15 6.1 0.2 1 21 314 334 314 336 0.92 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF418-212 - 676 2.9e-08 33.8 94.1 5 16 0.00023 0.22 11.9 1.4 1 23 342 364 342 365 0.95 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF418-212 - 676 2.9e-08 33.8 94.1 6 16 0.59 5.9e+02 1.1 1.8 1 19 370 388 370 392 0.88 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF418-212 - 676 2.9e-08 33.8 94.1 7 16 3e-05 0.03 14.7 0.7 1 23 398 420 398 421 0.95 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF418-212 - 676 2.9e-08 33.8 94.1 8 16 4.3e-05 0.043 14.2 0.6 1 23 426 448 426 449 0.95 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF418-212 - 676 2.9e-08 33.8 94.1 9 16 0.0066 6.6 7.3 0.3 1 21 454 474 454 476 0.93 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF418-212 - 676 2.9e-08 33.8 94.1 10 16 0.024 24 5.5 0.3 1 20 482 501 482 504 0.91 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF418-212 - 676 2.9e-08 33.8 94.1 11 16 0.28 2.8e+02 2.1 0.4 1 19 510 528 510 530 0.86 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF418-212 - 676 2.9e-08 33.8 94.1 12 16 1.1 1.1e+03 0.3 0.8 1 20 538 557 538 561 0.81 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF418-212 - 676 2.9e-08 33.8 94.1 13 16 1.7 1.7e+03 -0.4 0.3 1 12 566 577 566 578 0.92 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF418-212 - 676 2.9e-08 33.8 94.1 14 16 0.0066 6.5 7.3 0.3 1 20 591 610 591 611 0.90 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF418-212 - 676 2.9e-08 33.8 94.1 15 16 1 1e+03 0.3 0.1 1 10 619 628 619 629 0.90 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF418-212 - 676 2.9e-08 33.8 94.1 16 16 0.21 2.1e+02 2.5 0.9 1 20 647 666 647 669 0.90 Zinc-finger of C2H2 type Zn-ribbon_8 PF09723.10 40 ZNF418-212 - 676 1.6e-07 31.3 114.0 1 15 2.2 2.2e+03 -1.2 0.0 8 13 84 89 77 95 0.73 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF418-212 - 676 1.6e-07 31.3 114.0 2 15 0.98 9.8e+02 -0.0 4.5 6 37 203 240 202 242 0.61 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF418-212 - 676 1.6e-07 31.3 114.0 3 15 0.001 1 9.6 5.0 6 34 258 293 257 298 0.91 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF418-212 - 676 1.6e-07 31.3 114.0 4 15 0.0011 1.1 9.4 5.5 6 35 286 322 285 326 0.90 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF418-212 - 676 1.6e-07 31.3 114.0 5 15 0.0014 1.4 9.1 8.1 6 34 314 349 313 355 0.90 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF418-212 - 676 1.6e-07 31.3 114.0 6 15 0.19 1.9e+02 2.3 13.8 6 34 342 377 341 382 0.87 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF418-212 - 676 1.6e-07 31.3 114.0 7 15 0.03 30 4.8 10.8 6 38 370 409 369 411 0.87 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF418-212 - 676 1.6e-07 31.3 114.0 8 15 0.014 14 5.9 0.6 6 16 398 408 397 419 0.87 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF418-212 - 676 1.6e-07 31.3 114.0 9 15 0.0011 1.1 9.4 4.0 6 34 426 461 425 465 0.89 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF418-212 - 676 1.6e-07 31.3 114.0 10 15 4.5e-05 0.045 13.9 3.4 6 34 482 517 481 522 0.92 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF418-212 - 676 1.6e-07 31.3 114.0 11 15 0.00089 0.89 9.7 6.0 6 34 538 573 537 575 0.92 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF418-212 - 676 1.6e-07 31.3 114.0 12 15 0.0003 0.3 11.2 6.6 6 38 566 602 565 604 0.86 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF418-212 - 676 1.6e-07 31.3 114.0 13 15 0.00025 0.25 11.5 6.7 6 35 591 627 590 632 0.84 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF418-212 - 676 1.6e-07 31.3 114.0 14 15 0.0027 2.7 8.2 7.3 6 38 619 658 618 659 0.84 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF418-212 - 676 1.6e-07 31.3 114.0 15 15 0.006 5.9 7.1 0.7 6 18 647 659 646 671 0.83 Zinc ribbon domain C1_1 PF00130.22 53 ZNF418-212 - 676 2.1e-07 30.7 73.8 1 14 1 1e+03 -0.3 0.2 10 21 80 91 76 113 0.70 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF418-212 - 676 2.1e-07 30.7 73.8 2 14 5 5e+03 -2.5 0.8 17 35 192 209 191 212 0.64 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF418-212 - 676 2.1e-07 30.7 73.8 3 14 0.021 21 5.1 2.8 1 38 216 267 216 270 0.78 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF418-212 - 676 2.1e-07 30.7 73.8 4 14 0.011 11 6.0 2.6 1 38 248 295 248 298 0.81 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF418-212 - 676 2.1e-07 30.7 73.8 5 14 0.027 27 4.8 1.6 1 35 276 320 276 323 0.69 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF418-212 - 676 2.1e-07 30.7 73.8 6 14 0.012 12 5.9 2.3 3 38 306 351 302 354 0.81 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF418-212 - 676 2.1e-07 30.7 73.8 7 14 0.035 35 4.4 6.1 3 38 334 379 332 383 0.85 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF418-212 - 676 2.1e-07 30.7 73.8 8 14 0.0046 4.6 7.2 1.7 1 37 388 434 388 438 0.85 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF418-212 - 676 2.1e-07 30.7 73.8 9 14 0.013 13 5.8 0.8 9 36 423 461 415 464 0.81 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF418-212 - 676 2.1e-07 30.7 73.8 10 14 0.034 34 4.4 1.2 5 34 448 487 443 489 0.70 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF418-212 - 676 2.1e-07 30.7 73.8 11 14 0.00023 0.23 11.4 1.3 2 43 473 524 468 526 0.84 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF418-212 - 676 2.1e-07 30.7 73.8 12 14 0.00024 0.24 11.3 1.0 3 40 502 549 500 551 0.86 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF418-212 - 676 2.1e-07 30.7 73.8 13 14 0.00041 0.41 10.6 0.3 5 37 559 599 556 603 0.83 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF418-212 - 676 2.1e-07 30.7 73.8 14 14 2e-05 0.02 14.8 0.2 3 40 607 658 605 660 0.82 Phorbol esters/diacylglycerol binding domain (C1 domain) # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF418-212.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF418-212.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF418-212.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF418-212.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF418-212.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:05:57 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZNF419-201 - 510 1.2e-77 253.1 95.3 1 13 0.44 3.6e+02 1.9 0.1 3 15 125 137 123 140 0.87 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF419-201 - 510 1.2e-77 253.1 95.3 2 13 0.00078 0.64 10.6 8.0 5 25 177 213 174 214 0.61 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF419-201 - 510 1.2e-77 253.1 95.3 3 13 1.1e-07 9.3e-05 22.7 0.5 2 24 218 240 218 241 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF419-201 - 510 1.2e-77 253.1 95.3 4 13 3.6e-08 2.9e-05 24.3 0.1 4 25 248 269 245 270 0.90 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF419-201 - 510 1.2e-77 253.1 95.3 5 13 3.3e-11 2.7e-08 33.9 2.3 1 26 273 298 273 298 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF419-201 - 510 1.2e-77 253.1 95.3 6 13 1.2e-08 9.5e-06 25.8 0.7 2 24 302 324 301 325 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF419-201 - 510 1.2e-77 253.1 95.3 7 13 4.3e-11 3.5e-08 33.5 2.3 1 26 329 354 329 354 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF419-201 - 510 1.2e-77 253.1 95.3 8 13 3.5e-10 2.8e-07 30.6 0.4 1 25 357 381 357 382 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF419-201 - 510 1.2e-77 253.1 95.3 9 13 6.6e-10 5.4e-07 29.8 1.1 1 24 385 408 385 409 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF419-201 - 510 1.2e-77 253.1 95.3 10 13 5.2e-11 4.3e-08 33.2 0.6 2 25 414 437 413 438 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF419-201 - 510 1.2e-77 253.1 95.3 11 13 4.9e-08 4e-05 23.8 0.7 2 24 442 464 441 465 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF419-201 - 510 1.2e-77 253.1 95.3 12 13 2.8e-10 2.3e-07 30.9 2.3 1 26 469 494 469 494 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF419-201 - 510 1.2e-77 253.1 95.3 13 13 0.034 28 5.4 0.2 2 12 498 508 497 510 0.87 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZNF419-201 - 510 2e-60 198.0 95.7 1 12 3.3 2.7e+03 -0.8 0.1 14 23 122 131 121 140 0.83 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF419-201 - 510 2e-60 198.0 95.7 2 12 1.3e-08 1.1e-05 25.6 0.4 1 23 203 225 203 225 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF419-201 - 510 2e-60 198.0 95.7 3 12 1.2e-06 0.001 19.4 0.2 1 23 231 253 231 253 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF419-201 - 510 2e-60 198.0 95.7 4 12 4.3e-08 3.5e-05 24.0 1.0 3 23 261 281 259 281 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF419-201 - 510 2e-60 198.0 95.7 5 12 2.8e-07 0.00023 21.4 3.7 1 23 287 309 287 309 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF419-201 - 510 2e-60 198.0 95.7 6 12 5.9e-08 4.8e-05 23.6 1.0 1 23 315 337 315 337 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF419-201 - 510 2e-60 198.0 95.7 7 12 2.9e-08 2.3e-05 24.6 2.9 1 23 343 365 343 365 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF419-201 - 510 2e-60 198.0 95.7 8 12 4.3e-08 3.5e-05 24.0 4.1 1 23 371 393 371 393 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF419-201 - 510 2e-60 198.0 95.7 9 12 2.9e-08 2.4e-05 24.5 1.3 1 23 399 421 399 421 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF419-201 - 510 2e-60 198.0 95.7 10 12 1.1e-07 8.8e-05 22.8 1.6 1 23 427 449 427 449 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF419-201 - 510 2e-60 198.0 95.7 11 12 7.9e-08 6.4e-05 23.2 0.8 1 23 455 477 455 477 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF419-201 - 510 2e-60 198.0 95.7 12 12 2.2e-07 0.00018 21.8 4.6 1 23 483 505 483 505 0.98 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZNF419-201 - 510 1.2e-26 91.1 96.0 1 11 3e-05 0.024 15.4 0.4 1 23 203 225 203 226 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF419-201 - 510 1.2e-26 91.1 96.0 2 11 0.00028 0.23 12.4 0.2 1 23 231 253 231 254 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF419-201 - 510 1.2e-26 91.1 96.0 3 11 0.00012 0.099 13.5 0.8 2 23 260 281 259 282 0.91 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF419-201 - 510 1.2e-26 91.1 96.0 4 11 0.00058 0.47 11.4 2.9 1 23 287 309 287 310 0.91 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF419-201 - 510 1.2e-26 91.1 96.0 5 11 4.1e-05 0.034 15.0 0.9 1 23 315 337 315 338 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF419-201 - 510 1.2e-26 91.1 96.0 6 11 6.4e-05 0.052 14.4 2.7 1 23 343 365 343 366 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF419-201 - 510 1.2e-26 91.1 96.0 7 11 6.9e-05 0.056 14.3 3.7 1 23 371 393 371 394 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF419-201 - 510 1.2e-26 91.1 96.0 8 11 4.6e-05 0.038 14.8 1.1 1 23 399 421 399 422 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF419-201 - 510 1.2e-26 91.1 96.0 9 11 2.7e-05 0.022 15.6 1.0 1 23 427 449 427 450 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF419-201 - 510 1.2e-26 91.1 96.0 10 11 3.5e-05 0.028 15.2 0.8 1 23 455 477 455 478 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF419-201 - 510 1.2e-26 91.1 96.0 11 11 0.0012 0.97 10.5 3.3 1 23 483 505 483 506 0.94 C2H2-type zinc finger KRAB PF01352.27 42 ZNF419-201 - 510 6e-24 83.4 0.9 1 1 1.4e-26 1.1e-23 82.6 0.9 2 42 27 67 26 67 0.99 KRAB box zf-C2H2_8 PF15909.5 98 ZNF419-201 - 510 1.2e-10 41.6 50.0 1 6 0.00019 0.16 12.3 2.9 29 88 195 252 171 258 0.76 C2H2-type zinc ribbon zf-C2H2_8 PF15909.5 98 ZNF419-201 - 510 1.2e-10 41.6 50.0 2 6 0.0011 0.86 9.9 2.0 38 88 261 308 252 314 0.85 C2H2-type zinc ribbon zf-C2H2_8 PF15909.5 98 ZNF419-201 - 510 1.2e-10 41.6 50.0 3 6 0.00075 0.61 10.4 2.6 37 89 316 365 307 370 0.78 C2H2-type zinc ribbon zf-C2H2_8 PF15909.5 98 ZNF419-201 - 510 1.2e-10 41.6 50.0 4 6 3.1e-05 0.025 14.9 3.0 36 89 371 421 365 427 0.86 C2H2-type zinc ribbon zf-C2H2_8 PF15909.5 98 ZNF419-201 - 510 1.2e-10 41.6 50.0 5 6 2.2e-06 0.0018 18.6 1.2 41 89 430 477 421 482 0.86 C2H2-type zinc ribbon zf-C2H2_8 PF15909.5 98 ZNF419-201 - 510 1.2e-10 41.6 50.0 6 6 0.049 40 4.6 1.9 66 88 482 504 477 510 0.84 C2H2-type zinc ribbon zinc_ribbon_15 PF17032.5 86 ZNF419-201 - 510 4.6e-10 40.1 35.7 1 7 0.00077 0.63 10.8 1.2 34 75 199 240 194 246 0.87 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF419-201 - 510 4.6e-10 40.1 35.7 2 7 0.00042 0.34 11.7 0.4 28 78 251 299 240 302 0.78 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF419-201 - 510 4.6e-10 40.1 35.7 3 7 0.0013 1.1 10.1 3.7 26 78 275 327 261 333 0.85 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF419-201 - 510 4.6e-10 40.1 35.7 4 7 0.0013 1 10.1 1.0 32 78 309 355 301 358 0.82 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF419-201 - 510 4.6e-10 40.1 35.7 5 7 0.0014 1.1 10.0 2.0 32 75 337 380 329 385 0.86 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF419-201 - 510 4.6e-10 40.1 35.7 6 7 0.0011 0.87 10.4 4.2 30 78 363 411 358 442 0.52 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF419-201 - 510 4.6e-10 40.1 35.7 7 7 0.00018 0.14 12.9 0.8 34 78 451 495 442 499 0.86 zinc-ribbon family zf-C2H2_6 PF13912.6 27 ZNF419-201 - 510 7.3e-10 38.6 83.8 1 11 0.00028 0.23 11.5 0.4 1 12 202 213 202 218 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF419-201 - 510 7.3e-10 38.6 83.8 2 11 0.00013 0.1 12.6 0.2 2 12 231 241 230 253 0.81 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF419-201 - 510 7.3e-10 38.6 83.8 3 11 0.0032 2.6 8.1 1.0 2 22 259 279 259 283 0.83 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF419-201 - 510 7.3e-10 38.6 83.8 4 11 0.0061 5 7.2 1.0 2 12 287 297 287 298 0.91 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF419-201 - 510 7.3e-10 38.6 83.8 5 11 6.1e-05 0.05 13.6 1.1 2 24 315 337 315 340 0.89 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF419-201 - 510 7.3e-10 38.6 83.8 6 11 0.016 13 5.9 2.0 2 20 343 361 343 366 0.80 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF419-201 - 510 7.3e-10 38.6 83.8 7 11 0.11 91 3.2 4.2 2 24 371 393 371 396 0.92 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF419-201 - 510 7.3e-10 38.6 83.8 8 11 0.11 91 3.2 1.3 2 11 399 408 399 409 0.87 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF419-201 - 510 7.3e-10 38.6 83.8 9 11 0.008 6.5 6.9 1.2 2 24 427 449 427 450 0.90 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF419-201 - 510 7.3e-10 38.6 83.8 10 11 0.0032 2.6 8.1 0.7 2 20 455 473 455 478 0.79 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF419-201 - 510 7.3e-10 38.6 83.8 11 11 0.0024 1.9 8.6 2.6 2 24 483 505 483 508 0.93 C2H2-type zinc finger zf_UBZ PF18439.1 32 ZNF419-201 - 510 1.1e-09 37.7 46.7 1 11 0.0051 4.2 7.1 0.1 2 12 202 212 201 222 0.83 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF419-201 - 510 1.1e-09 37.7 46.7 2 11 0.0052 4.2 7.0 0.3 2 12 230 240 229 242 0.87 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF419-201 - 510 1.1e-09 37.7 46.7 3 11 0.0029 2.4 7.8 0.1 3 21 259 278 258 278 0.90 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF419-201 - 510 1.1e-09 37.7 46.7 4 11 0.0034 2.7 7.6 0.2 3 15 287 299 285 306 0.77 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF419-201 - 510 1.1e-09 37.7 46.7 5 11 0.0026 2.1 8.0 0.1 3 20 315 333 313 334 0.83 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF419-201 - 510 1.1e-09 37.7 46.7 6 11 0.013 11 5.7 0.1 3 13 343 353 341 360 0.86 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF419-201 - 510 1.1e-09 37.7 46.7 7 11 0.0091 7.4 6.3 0.7 3 20 371 389 369 390 0.77 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF419-201 - 510 1.1e-09 37.7 46.7 8 11 0.12 97 2.7 0.1 3 15 399 411 397 418 0.80 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF419-201 - 510 1.1e-09 37.7 46.7 9 11 0.0038 3.1 7.5 0.2 3 20 427 445 425 446 0.88 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF419-201 - 510 1.1e-09 37.7 46.7 10 11 0.11 87 2.8 0.1 3 16 455 469 453 474 0.77 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF419-201 - 510 1.1e-09 37.7 46.7 11 11 0.07 57 3.4 0.1 3 13 483 493 481 498 0.83 Ubiquitin-Binding Zinc Finger Zn-ribbon_8 PF09723.10 40 ZNF419-201 - 510 9.5e-09 35.2 60.6 1 10 6.1 5e+03 -2.3 0.1 31 39 131 140 130 140 0.83 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF419-201 - 510 9.5e-09 35.2 60.6 2 10 0.00029 0.24 11.6 3.9 6 34 203 238 202 243 0.89 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF419-201 - 510 9.5e-09 35.2 60.6 3 10 0.0094 7.7 6.7 0.5 6 19 231 244 229 250 0.84 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF419-201 - 510 9.5e-09 35.2 60.6 4 10 9e-05 0.073 13.2 1.8 6 36 259 296 258 298 0.88 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF419-201 - 510 9.5e-09 35.2 60.6 5 10 4e-05 0.032 14.3 2.2 6 34 315 350 314 355 0.92 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF419-201 - 510 9.5e-09 35.2 60.6 6 10 0.0044 3.6 7.8 7.1 6 34 371 406 370 409 0.89 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF419-201 - 510 9.5e-09 35.2 60.6 7 10 0.0064 5.2 7.3 6.4 6 34 399 434 398 438 0.90 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF419-201 - 510 9.5e-09 35.2 60.6 8 10 0.0067 5.4 7.2 5.7 6 34 427 462 425 466 0.79 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF419-201 - 510 9.5e-09 35.2 60.6 9 10 0.00039 0.32 11.1 3.4 6 34 455 490 454 494 0.93 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF419-201 - 510 9.5e-09 35.2 60.6 10 10 0.033 27 5.0 0.8 6 15 483 492 482 498 0.82 Zinc ribbon domain C1_1 PF00130.22 53 ZNF419-201 - 510 3.9e-08 33.0 47.1 1 7 0.0022 1.8 8.5 1.1 10 37 201 239 194 241 0.85 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF419-201 - 510 3.9e-08 33.0 47.1 2 7 0.0057 4.7 7.2 5.3 1 38 249 296 249 324 0.74 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF419-201 - 510 3.9e-08 33.0 47.1 3 7 0.0025 2 8.4 2.3 9 38 312 352 305 356 0.77 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF419-201 - 510 3.9e-08 33.0 47.1 4 7 0.00015 0.12 12.3 5.0 2 36 361 406 361 409 0.88 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF419-201 - 510 3.9e-08 33.0 47.1 5 7 0.021 17 5.4 0.3 4 23 392 410 388 418 0.74 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF419-201 - 510 3.9e-08 33.0 47.1 6 7 0.00047 0.38 10.7 1.0 2 38 418 464 416 467 0.83 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF419-201 - 510 3.9e-08 33.0 47.1 7 7 0.05 41 4.2 1.1 2 23 474 494 473 505 0.74 Phorbol esters/diacylglycerol binding domain (C1 domain) # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF419-201.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF419-201.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF419-201.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF419-201.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF419-201.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:05:57 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZNF419-202 - 478 4.2e-78 254.6 95.3 1 13 0.43 3.3e+02 2.0 0.1 3 15 93 105 91 108 0.87 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF419-202 - 478 4.2e-78 254.6 95.3 2 13 0.00075 0.59 10.7 8.0 5 25 145 181 142 182 0.61 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF419-202 - 478 4.2e-78 254.6 95.3 3 13 1.1e-07 8.6e-05 22.8 0.5 2 24 186 208 186 209 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF419-202 - 478 4.2e-78 254.6 95.3 4 13 3.5e-08 2.7e-05 24.4 0.1 4 25 216 237 213 238 0.90 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF419-202 - 478 4.2e-78 254.6 95.3 5 13 3.2e-11 2.5e-08 34.0 2.3 1 26 241 266 241 266 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF419-202 - 478 4.2e-78 254.6 95.3 6 13 1.1e-08 8.8e-06 25.9 0.7 2 24 270 292 269 293 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF419-202 - 478 4.2e-78 254.6 95.3 7 13 4.2e-11 3.2e-08 33.6 2.3 1 26 297 322 297 322 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF419-202 - 478 4.2e-78 254.6 95.3 8 13 3.4e-10 2.6e-07 30.7 0.4 1 25 325 349 325 350 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF419-202 - 478 4.2e-78 254.6 95.3 9 13 6.4e-10 5e-07 29.9 1.1 1 24 353 376 353 377 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF419-202 - 478 4.2e-78 254.6 95.3 10 13 5.1e-11 3.9e-08 33.3 0.6 2 25 382 405 381 406 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF419-202 - 478 4.2e-78 254.6 95.3 11 13 4.8e-08 3.7e-05 23.9 0.7 2 24 410 432 409 433 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF419-202 - 478 4.2e-78 254.6 95.3 12 13 2.7e-10 2.1e-07 31.0 2.3 1 26 437 462 437 462 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF419-202 - 478 4.2e-78 254.6 95.3 13 13 0.033 26 5.5 0.2 2 12 466 476 465 478 0.87 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZNF419-202 - 478 8.2e-61 199.2 95.7 1 12 3.2 2.5e+03 -0.7 0.1 14 23 90 99 89 108 0.83 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF419-202 - 478 8.2e-61 199.2 95.7 2 12 1.3e-08 1e-05 25.7 0.4 1 23 171 193 171 193 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF419-202 - 478 8.2e-61 199.2 95.7 3 12 1.2e-06 0.00094 19.5 0.2 1 23 199 221 199 221 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF419-202 - 478 8.2e-61 199.2 95.7 4 12 4.2e-08 3.2e-05 24.1 1.0 3 23 229 249 227 249 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF419-202 - 478 8.2e-61 199.2 95.7 5 12 2.7e-07 0.00021 21.5 3.7 1 23 255 277 255 277 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF419-202 - 478 8.2e-61 199.2 95.7 6 12 5.7e-08 4.4e-05 23.7 1.0 1 23 283 305 283 305 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF419-202 - 478 8.2e-61 199.2 95.7 7 12 2.8e-08 2.1e-05 24.7 2.9 1 23 311 333 311 333 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF419-202 - 478 8.2e-61 199.2 95.7 8 12 4.1e-08 3.2e-05 24.1 4.1 1 23 339 361 339 361 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF419-202 - 478 8.2e-61 199.2 95.7 9 12 2.9e-08 2.2e-05 24.6 1.3 1 23 367 389 367 389 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF419-202 - 478 8.2e-61 199.2 95.7 10 12 1e-07 8.1e-05 22.9 1.6 1 23 395 417 395 417 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF419-202 - 478 8.2e-61 199.2 95.7 11 12 7.6e-08 6e-05 23.3 0.8 1 23 423 445 423 445 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF419-202 - 478 8.2e-61 199.2 95.7 12 12 2.1e-07 0.00017 21.9 4.6 1 23 451 473 451 473 0.98 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZNF419-202 - 478 4.9e-27 92.3 96.0 1 11 2.9e-05 0.023 15.5 0.4 1 23 171 193 171 194 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF419-202 - 478 4.9e-27 92.3 96.0 2 11 0.00028 0.21 12.5 0.2 1 23 199 221 199 222 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF419-202 - 478 4.9e-27 92.3 96.0 3 11 0.00012 0.092 13.6 0.8 2 23 228 249 227 250 0.91 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF419-202 - 478 4.9e-27 92.3 96.0 4 11 0.00056 0.44 11.5 2.9 1 23 255 277 255 278 0.91 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF419-202 - 478 4.9e-27 92.3 96.0 5 11 4e-05 0.031 15.1 0.9 1 23 283 305 283 306 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF419-202 - 478 4.9e-27 92.3 96.0 6 11 6.2e-05 0.048 14.5 2.7 1 23 311 333 311 334 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF419-202 - 478 4.9e-27 92.3 96.0 7 11 6.6e-05 0.052 14.4 3.7 1 23 339 361 339 362 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF419-202 - 478 4.9e-27 92.3 96.0 8 11 4.5e-05 0.035 14.9 1.1 1 23 367 389 367 390 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF419-202 - 478 4.9e-27 92.3 96.0 9 11 2.6e-05 0.02 15.7 1.0 1 23 395 417 395 418 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF419-202 - 478 4.9e-27 92.3 96.0 10 11 3.4e-05 0.026 15.3 0.8 1 23 423 445 423 446 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF419-202 - 478 4.9e-27 92.3 96.0 11 11 0.0011 0.9 10.6 3.3 1 23 451 473 451 474 0.94 C2H2-type zinc finger KRAB PF01352.27 42 ZNF419-202 - 478 5.6e-24 83.5 0.9 1 1 1.3e-26 1e-23 82.7 0.9 2 42 28 68 27 68 0.99 KRAB box zf-C2H2_8 PF15909.5 98 ZNF419-202 - 478 7.6e-11 42.2 50.1 1 6 0.0002 0.15 12.4 3.0 29 88 163 220 139 226 0.76 C2H2-type zinc ribbon zf-C2H2_8 PF15909.5 98 ZNF419-202 - 478 7.6e-11 42.2 50.1 2 6 0.001 0.8 10.1 2.0 38 88 229 276 220 282 0.85 C2H2-type zinc ribbon zf-C2H2_8 PF15909.5 98 ZNF419-202 - 478 7.6e-11 42.2 50.1 3 6 0.00074 0.58 10.5 2.6 37 89 284 333 275 338 0.78 C2H2-type zinc ribbon zf-C2H2_8 PF15909.5 98 ZNF419-202 - 478 7.6e-11 42.2 50.1 4 6 2.9e-05 0.023 15.0 3.0 36 89 339 389 333 395 0.86 C2H2-type zinc ribbon zf-C2H2_8 PF15909.5 98 ZNF419-202 - 478 7.6e-11 42.2 50.1 5 6 2.1e-06 0.0016 18.7 1.2 41 89 398 445 389 450 0.86 C2H2-type zinc ribbon zf-C2H2_8 PF15909.5 98 ZNF419-202 - 478 7.6e-11 42.2 50.1 6 6 0.047 37 4.7 1.8 66 88 450 472 445 478 0.84 C2H2-type zinc ribbon zinc_ribbon_15 PF17032.5 86 ZNF419-202 - 478 2.4e-10 41.0 35.5 1 7 0.00071 0.55 11.0 1.2 34 75 167 208 160 214 0.87 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF419-202 - 478 2.4e-10 41.0 35.5 2 7 0.00041 0.32 11.8 0.5 28 78 219 267 208 270 0.78 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF419-202 - 478 2.4e-10 41.0 35.5 3 7 0.0013 0.98 10.2 3.7 26 78 243 295 229 301 0.85 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF419-202 - 478 2.4e-10 41.0 35.5 4 7 0.0016 1.2 9.9 1.2 32 78 277 323 269 325 0.82 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF419-202 - 478 2.4e-10 41.0 35.5 5 7 0.0013 1 10.2 1.9 31 75 304 348 296 353 0.87 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF419-202 - 478 2.4e-10 41.0 35.5 6 7 0.001 0.81 10.5 4.3 29 78 330 379 325 410 0.55 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF419-202 - 478 2.4e-10 41.0 35.5 7 7 0.00017 0.13 13.0 0.7 34 78 419 463 410 467 0.86 zinc-ribbon family zf-C2H2_6 PF13912.6 27 ZNF419-202 - 478 3.2e-10 39.8 83.8 1 11 0.00027 0.21 11.6 0.4 1 12 170 181 170 186 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF419-202 - 478 3.2e-10 39.8 83.8 2 11 0.00012 0.095 12.7 0.2 2 12 199 209 198 221 0.81 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF419-202 - 478 3.2e-10 39.8 83.8 3 11 0.0031 2.4 8.2 1.0 2 22 227 247 227 251 0.83 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF419-202 - 478 3.2e-10 39.8 83.8 4 11 0.006 4.6 7.3 1.0 2 12 255 265 255 266 0.91 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF419-202 - 478 3.2e-10 39.8 83.8 5 11 6e-05 0.046 13.7 1.1 2 24 283 305 283 308 0.89 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF419-202 - 478 3.2e-10 39.8 83.8 6 11 0.015 12 6.0 2.0 2 20 311 329 311 334 0.80 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF419-202 - 478 3.2e-10 39.8 83.8 7 11 0.11 84 3.3 4.2 2 24 339 361 339 364 0.92 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF419-202 - 478 3.2e-10 39.8 83.8 8 11 0.11 85 3.3 1.3 2 11 367 376 367 377 0.87 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF419-202 - 478 3.2e-10 39.8 83.8 9 11 0.0077 6 7.0 1.2 2 24 395 417 395 418 0.90 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF419-202 - 478 3.2e-10 39.8 83.8 10 11 0.0031 2.4 8.2 0.7 2 20 423 441 423 446 0.79 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF419-202 - 478 3.2e-10 39.8 83.8 11 11 0.0023 1.8 8.7 2.6 2 24 451 473 451 476 0.93 C2H2-type zinc finger zf_UBZ PF18439.1 32 ZNF419-202 - 478 5.7e-10 38.6 46.9 1 11 0.005 3.9 7.2 0.1 2 12 170 180 169 190 0.83 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF419-202 - 478 5.7e-10 38.6 46.9 2 11 0.0051 3.9 7.1 0.3 2 12 198 208 197 210 0.87 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF419-202 - 478 5.7e-10 38.6 46.9 3 11 0.0028 2.2 8.0 0.1 3 21 227 246 226 246 0.90 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF419-202 - 478 5.7e-10 38.6 46.9 4 11 0.0033 2.5 7.7 0.2 3 15 255 267 253 274 0.77 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF419-202 - 478 5.7e-10 38.6 46.9 5 11 0.0026 2 8.1 0.1 3 20 283 301 281 302 0.83 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF419-202 - 478 5.7e-10 38.6 46.9 6 11 0.012 9.2 6.0 0.2 3 13 311 321 309 329 0.84 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF419-202 - 478 5.7e-10 38.6 46.9 7 11 0.0088 6.9 6.4 0.7 3 20 339 357 337 358 0.77 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF419-202 - 478 5.7e-10 38.6 46.9 8 11 0.12 90 2.8 0.1 3 15 367 379 365 386 0.80 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF419-202 - 478 5.7e-10 38.6 46.9 9 11 0.0037 2.9 7.6 0.2 3 20 395 413 393 414 0.88 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF419-202 - 478 5.7e-10 38.6 46.9 10 11 0.1 81 2.9 0.1 3 16 423 437 421 442 0.77 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF419-202 - 478 5.7e-10 38.6 46.9 11 11 0.068 53 3.5 0.1 3 13 451 461 449 466 0.83 Ubiquitin-Binding Zinc Finger Zn-ribbon_8 PF09723.10 40 ZNF419-202 - 478 5.6e-09 36.0 60.6 1 10 5.9 4.6e+03 -2.2 0.1 31 39 99 108 98 108 0.83 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF419-202 - 478 5.6e-09 36.0 60.6 2 10 0.00029 0.23 11.6 4.0 6 34 171 206 170 211 0.89 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF419-202 - 478 5.6e-09 36.0 60.6 3 10 0.0091 7.1 6.8 0.5 6 19 199 212 197 218 0.84 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF419-202 - 478 5.6e-09 36.0 60.6 4 10 8.7e-05 0.068 13.3 1.8 6 36 227 264 226 266 0.88 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF419-202 - 478 5.6e-09 36.0 60.6 5 10 3.8e-05 0.03 14.4 2.2 6 34 283 318 282 323 0.92 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF419-202 - 478 5.6e-09 36.0 60.6 6 10 0.0058 4.5 7.5 7.6 6 34 339 374 338 378 0.88 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF419-202 - 478 5.6e-09 36.0 60.6 7 10 0.0062 4.9 7.4 6.5 6 34 367 402 366 406 0.90 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF419-202 - 478 5.6e-09 36.0 60.6 8 10 0.0064 5 7.3 5.7 6 34 395 430 393 434 0.79 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF419-202 - 478 5.6e-09 36.0 60.6 9 10 0.00036 0.28 11.3 3.3 6 34 423 458 422 463 0.93 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF419-202 - 478 5.6e-09 36.0 60.6 10 10 0.029 23 5.2 0.8 6 16 451 461 450 467 0.82 Zinc ribbon domain C1_1 PF00130.22 53 ZNF419-202 - 478 4.8e-08 32.8 48.3 1 8 0.0021 1.7 8.6 1.2 11 37 170 207 163 211 0.85 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF419-202 - 478 4.8e-08 32.8 48.3 2 8 0.00058 0.45 10.4 1.5 1 37 217 263 217 267 0.88 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF419-202 - 478 4.8e-08 32.8 48.3 3 8 0.0073 5.7 6.9 3.2 2 36 246 290 241 293 0.76 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF419-202 - 478 4.8e-08 32.8 48.3 4 8 0.0029 2.3 8.2 2.6 9 38 280 320 273 324 0.77 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF419-202 - 478 4.8e-08 32.8 48.3 5 8 0.00013 0.1 12.5 5.0 2 36 329 374 329 379 0.88 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF419-202 - 478 4.8e-08 32.8 48.3 6 8 0.0027 2.1 8.3 1.9 4 35 360 401 357 406 0.79 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF419-202 - 478 4.8e-08 32.8 48.3 7 8 0.00048 0.38 10.7 1.0 2 38 386 432 385 435 0.83 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF419-202 - 478 4.8e-08 32.8 48.3 8 8 0.048 38 4.3 1.1 2 23 442 462 441 473 0.74 Phorbol esters/diacylglycerol binding domain (C1 domain) FAM178 PF14816.6 373 ZNF419-202 - 478 1.5e-07 30.8 12.6 1 8 0.00091 0.71 8.8 0.3 21 130 40 145 37 161 0.81 Family of unknown function, FAM178 FAM178 PF14816.6 373 ZNF419-202 - 478 1.5e-07 30.8 12.6 2 8 0.12 90 1.9 0.0 66 102 178 212 143 222 0.72 Family of unknown function, FAM178 FAM178 PF14816.6 373 ZNF419-202 - 478 1.5e-07 30.8 12.6 3 8 0.0057 4.5 6.2 0.1 78 106 244 272 231 292 0.75 Family of unknown function, FAM178 FAM178 PF14816.6 373 ZNF419-202 - 478 1.5e-07 30.8 12.6 4 8 0.084 65 2.3 0.0 72 103 294 325 287 341 0.83 Family of unknown function, FAM178 FAM178 PF14816.6 373 ZNF419-202 - 478 1.5e-07 30.8 12.6 5 8 0.32 2.5e+02 0.4 0.0 81 102 331 352 317 358 0.78 Family of unknown function, FAM178 FAM178 PF14816.6 373 ZNF419-202 - 478 1.5e-07 30.8 12.6 6 8 0.0079 6.1 5.7 0.1 74 104 352 382 345 399 0.78 Family of unknown function, FAM178 FAM178 PF14816.6 373 ZNF419-202 - 478 1.5e-07 30.8 12.6 7 8 0.0013 1 8.3 0.1 73 104 407 438 391 452 0.80 Family of unknown function, FAM178 FAM178 PF14816.6 373 ZNF419-202 - 478 1.5e-07 30.8 12.6 8 8 0.85 6.6e+02 -1.0 0.0 79 103 441 465 435 473 0.81 Family of unknown function, FAM178 # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF419-202.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF419-202.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF419-202.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF419-202.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF419-202.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:05:58 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZNF419-203 - 442 8.7e-64 209.3 80.6 1 11 0.36 3e+02 2.1 0.1 3 15 113 125 111 128 0.87 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF419-203 - 442 8.7e-64 209.3 80.6 2 11 0.00067 0.57 10.7 8.1 5 25 165 201 162 202 0.61 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF419-203 - 442 8.7e-64 209.3 80.6 3 11 9.2e-08 7.8e-05 22.9 0.5 2 24 206 228 206 229 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF419-203 - 442 8.7e-64 209.3 80.6 4 11 2.9e-08 2.5e-05 24.5 0.1 4 25 236 257 233 258 0.90 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF419-203 - 442 8.7e-64 209.3 80.6 5 11 2.7e-11 2.3e-08 34.1 2.3 1 26 261 286 261 286 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF419-203 - 442 8.7e-64 209.3 80.6 6 11 9.4e-09 8e-06 26.1 0.7 2 24 290 312 289 313 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF419-203 - 442 8.7e-64 209.3 80.6 7 11 3.5e-11 3e-08 33.7 2.3 1 26 317 342 317 342 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF419-203 - 442 8.7e-64 209.3 80.6 8 11 2.8e-10 2.4e-07 30.9 0.4 1 25 345 369 345 370 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF419-203 - 442 8.7e-64 209.3 80.6 9 11 5.3e-10 4.5e-07 30.0 1.1 1 24 373 396 373 397 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF419-203 - 442 8.7e-64 209.3 80.6 10 11 2.2e-10 1.9e-07 31.2 2.3 1 26 401 426 401 426 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF419-203 - 442 8.7e-64 209.3 80.6 11 11 0.028 24 5.6 0.2 2 12 430 440 429 442 0.87 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZNF419-203 - 442 2.4e-50 166.3 78.8 1 10 2.5 2.1e+03 -0.5 0.1 14 23 110 119 109 129 0.79 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF419-203 - 442 2.4e-50 166.3 78.8 2 10 1.1e-08 9.2e-06 25.8 0.4 1 23 191 213 191 213 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF419-203 - 442 2.4e-50 166.3 78.8 3 10 1e-06 0.00086 19.6 0.2 1 23 219 241 219 241 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF419-203 - 442 2.4e-50 166.3 78.8 4 10 3.5e-08 3e-05 24.2 1.0 3 23 249 269 247 269 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF419-203 - 442 2.4e-50 166.3 78.8 5 10 2.3e-07 0.00019 21.7 3.7 1 23 275 297 275 297 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF419-203 - 442 2.4e-50 166.3 78.8 6 10 4.7e-08 4e-05 23.8 1.0 1 23 303 325 303 325 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF419-203 - 442 2.4e-50 166.3 78.8 7 10 2.3e-08 2e-05 24.8 2.9 1 23 331 353 331 353 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF419-203 - 442 2.4e-50 166.3 78.8 8 10 3.4e-08 2.9e-05 24.3 4.1 1 23 359 381 359 381 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF419-203 - 442 2.4e-50 166.3 78.8 9 10 1.7e-08 1.5e-05 25.2 1.3 1 23 387 409 387 409 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF419-203 - 442 2.4e-50 166.3 78.8 10 10 1.8e-07 0.00015 22.0 4.6 1 23 415 437 415 437 0.98 Zinc finger, C2H2 type KRAB PF01352.27 42 ZNF419-203 - 442 5e-24 83.7 0.9 1 1 1.1e-26 9.2e-24 82.8 0.9 2 42 15 55 14 55 0.99 KRAB box zf-C2H2_4 PF13894.6 24 ZNF419-203 - 442 8.3e-21 72.9 80.5 1 9 2.4e-05 0.02 15.7 0.4 1 23 191 213 191 214 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF419-203 - 442 8.3e-21 72.9 80.5 2 9 0.00023 0.19 12.6 0.2 1 23 219 241 219 242 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF419-203 - 442 8.3e-21 72.9 80.5 3 9 9.8e-05 0.083 13.8 0.8 2 23 248 269 247 270 0.91 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF419-203 - 442 8.3e-21 72.9 80.5 4 9 0.00047 0.4 11.7 2.9 1 23 275 297 275 298 0.91 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF419-203 - 442 8.3e-21 72.9 80.5 5 9 3.3e-05 0.028 15.2 0.9 1 23 303 325 303 326 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF419-203 - 442 8.3e-21 72.9 80.5 6 9 5.1e-05 0.044 14.6 2.7 1 23 331 353 331 354 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF419-203 - 442 8.3e-21 72.9 80.5 7 9 5.5e-05 0.047 14.5 3.7 1 23 359 381 359 382 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF419-203 - 442 8.3e-21 72.9 80.5 8 9 5.4e-05 0.046 14.6 1.2 1 23 387 409 387 410 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF419-203 - 442 8.3e-21 72.9 80.5 9 9 0.00095 0.81 10.7 3.3 1 23 415 437 415 438 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF419-203 - 442 9.5e-10 38.2 67.4 1 9 0.00023 0.2 11.7 0.4 1 12 190 201 190 206 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF419-203 - 442 9.5e-10 38.2 67.4 2 9 0.0001 0.087 12.9 0.2 2 12 219 229 218 241 0.81 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF419-203 - 442 9.5e-10 38.2 67.4 3 9 0.0026 2.2 8.4 1.0 2 22 247 267 247 271 0.83 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF419-203 - 442 9.5e-10 38.2 67.4 4 9 0.005 4.3 7.5 1.0 2 12 275 285 275 286 0.91 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF419-203 - 442 9.5e-10 38.2 67.4 5 9 4.9e-05 0.042 13.9 1.1 2 24 303 325 303 328 0.89 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF419-203 - 442 9.5e-10 38.2 67.4 6 9 0.013 11 6.1 2.0 2 20 331 349 331 354 0.80 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF419-203 - 442 9.5e-10 38.2 67.4 7 9 0.09 77 3.5 4.2 2 24 359 381 359 384 0.92 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF419-203 - 442 9.5e-10 38.2 67.4 8 9 0.025 22 5.2 0.9 2 20 387 405 387 410 0.76 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF419-203 - 442 9.5e-10 38.2 67.4 9 9 0.0019 1.6 8.8 2.6 2 24 415 437 415 440 0.93 C2H2-type zinc finger zf_UBZ PF18439.1 32 ZNF419-203 - 442 5.1e-09 35.6 37.8 1 9 0.0041 3.5 7.3 0.1 2 12 190 200 189 210 0.83 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF419-203 - 442 5.1e-09 35.6 37.8 2 9 0.0042 3.6 7.3 0.3 2 12 218 228 217 230 0.87 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF419-203 - 442 5.1e-09 35.6 37.8 3 9 0.0023 2 8.1 0.1 3 21 247 266 246 266 0.90 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF419-203 - 442 5.1e-09 35.6 37.8 4 9 0.0027 2.3 7.9 0.2 3 15 275 287 273 294 0.77 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF419-203 - 442 5.1e-09 35.6 37.8 5 9 0.0021 1.8 8.2 0.1 3 20 303 321 301 322 0.83 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF419-203 - 442 5.1e-09 35.6 37.8 6 9 0.0099 8.5 6.1 0.2 3 13 331 341 329 349 0.84 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF419-203 - 442 5.1e-09 35.6 37.8 7 9 0.0074 6.3 6.5 0.7 3 20 359 377 357 378 0.77 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF419-203 - 442 5.1e-09 35.6 37.8 8 9 0.07 59 3.4 0.1 3 16 387 401 385 406 0.77 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF419-203 - 442 5.1e-09 35.6 37.8 9 9 0.057 49 3.6 0.1 3 13 415 425 413 430 0.83 Ubiquitin-Binding Zinc Finger zinc_ribbon_15 PF17032.5 86 ZNF419-203 - 442 2.1e-08 34.8 28.1 1 7 0.00067 0.57 11.0 1.3 34 75 187 228 181 233 0.87 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF419-203 - 442 2.1e-08 34.8 28.1 2 7 0.00046 0.39 11.5 0.7 28 78 239 287 229 289 0.77 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF419-203 - 442 2.1e-08 34.8 28.1 3 7 0.001 0.87 10.4 3.7 26 78 263 315 249 321 0.85 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF419-203 - 442 2.1e-08 34.8 28.1 4 7 0.0013 1.1 10.1 1.1 32 78 297 343 289 345 0.82 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF419-203 - 442 2.1e-08 34.8 28.1 5 7 0.0008 0.68 10.7 1.6 32 75 325 368 318 374 0.86 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF419-203 - 442 2.1e-08 34.8 28.1 6 7 0.00031 0.26 12.0 1.7 26 76 347 397 340 400 0.89 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF419-203 - 442 2.1e-08 34.8 28.1 7 7 0.00012 0.1 13.3 1.0 30 78 379 427 374 431 0.88 zinc-ribbon family zf-C2H2_8 PF15909.5 98 ZNF419-203 - 442 3.2e-08 33.8 41.8 1 5 0.00015 0.13 12.6 2.9 29 88 183 240 159 246 0.76 C2H2-type zinc ribbon zf-C2H2_8 PF15909.5 98 ZNF419-203 - 442 3.2e-08 33.8 41.8 2 5 0.00087 0.74 10.2 2.0 38 88 249 296 239 301 0.85 C2H2-type zinc ribbon zf-C2H2_8 PF15909.5 98 ZNF419-203 - 442 3.2e-08 33.8 41.8 3 5 0.00066 0.56 10.5 2.6 37 89 304 353 297 358 0.78 C2H2-type zinc ribbon zf-C2H2_8 PF15909.5 98 ZNF419-203 - 442 3.2e-08 33.8 41.8 4 5 2e-06 0.0017 18.6 3.1 36 89 359 409 353 413 0.87 C2H2-type zinc ribbon zf-C2H2_8 PF15909.5 98 ZNF419-203 - 442 3.2e-08 33.8 41.8 5 5 0.029 25 5.3 1.7 66 88 414 436 406 442 0.83 C2H2-type zinc ribbon Zn-ribbon_8 PF09723.10 40 ZNF419-203 - 442 1.2e-07 31.7 48.8 1 8 5 4.2e+03 -2.0 0.1 31 39 119 128 118 128 0.83 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF419-203 - 442 1.2e-07 31.7 48.8 2 8 0.00025 0.21 11.7 4.0 6 34 191 226 190 231 0.89 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF419-203 - 442 1.2e-07 31.7 48.8 3 8 0.0076 6.5 7.0 0.5 6 19 219 232 217 238 0.84 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF419-203 - 442 1.2e-07 31.7 48.8 4 8 6e-05 0.052 13.7 1.6 6 36 247 284 246 287 0.88 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF419-203 - 442 1.2e-07 31.7 48.8 5 8 3.2e-05 0.027 14.6 2.2 6 34 303 338 302 343 0.92 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF419-203 - 442 1.2e-07 31.7 48.8 6 8 0.0038 3.2 7.9 7.3 6 34 359 394 358 398 0.88 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF419-203 - 442 1.2e-07 31.7 48.8 7 8 0.0026 2.2 8.5 5.9 6 34 387 422 386 427 0.91 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF419-203 - 442 1.2e-07 31.7 48.8 8 8 0.028 24 5.1 1.2 6 16 415 425 414 433 0.81 Zinc ribbon domain C1_1 PF00130.22 53 ZNF419-203 - 442 3.1e-07 30.2 38.4 1 7 0.0018 1.5 8.7 1.3 10 37 189 227 182 231 0.85 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF419-203 - 442 3.1e-07 30.2 38.4 2 7 0.00048 0.41 10.6 1.5 1 37 237 283 237 287 0.88 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF419-203 - 442 3.1e-07 30.2 38.4 3 7 0.0086 7.4 6.5 3.7 2 36 266 310 261 312 0.75 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF419-203 - 442 3.1e-07 30.2 38.4 4 7 0.0021 1.8 8.5 2.4 9 38 300 340 293 344 0.77 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF419-203 - 442 3.1e-07 30.2 38.4 5 7 0.00011 0.095 12.6 5.0 2 36 349 394 349 398 0.88 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF419-203 - 442 3.1e-07 30.2 38.4 6 7 0.0063 5.4 7.0 3.0 4 35 380 421 377 423 0.78 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF419-203 - 442 3.1e-07 30.2 38.4 7 7 0.024 21 5.1 0.4 2 23 406 426 404 437 0.75 Phorbol esters/diacylglycerol binding domain (C1 domain) # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF419-203.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF419-203.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF419-203.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF419-203.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF419-203.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:05:58 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZNF419-204 - 464 2.6e-78 255.2 95.3 1 13 0.41 3.2e+02 2.0 0.1 3 15 79 91 77 94 0.87 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF419-204 - 464 2.6e-78 255.2 95.3 2 13 0.00072 0.56 10.7 8.0 5 25 131 167 128 168 0.61 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF419-204 - 464 2.6e-78 255.2 95.3 3 13 1.1e-07 8.3e-05 22.8 0.5 2 24 172 194 172 195 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF419-204 - 464 2.6e-78 255.2 95.3 4 13 3.3e-08 2.6e-05 24.4 0.1 4 25 202 223 199 224 0.90 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF419-204 - 464 2.6e-78 255.2 95.3 5 13 3.1e-11 2.4e-08 34.0 2.3 1 26 227 252 227 252 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF419-204 - 464 2.6e-78 255.2 95.3 6 13 1.1e-08 8.5e-06 26.0 0.7 2 24 256 278 255 279 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF419-204 - 464 2.6e-78 255.2 95.3 7 13 4e-11 3.1e-08 33.7 2.3 1 26 283 308 283 308 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF419-204 - 464 2.6e-78 255.2 95.3 8 13 3.3e-10 2.5e-07 30.8 0.4 1 25 311 335 311 336 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF419-204 - 464 2.6e-78 255.2 95.3 9 13 6.1e-10 4.8e-07 29.9 1.1 1 24 339 362 339 363 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF419-204 - 464 2.6e-78 255.2 95.3 10 13 4.9e-11 3.8e-08 33.4 0.6 2 25 368 391 367 392 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF419-204 - 464 2.6e-78 255.2 95.3 11 13 4.6e-08 3.6e-05 24.0 0.7 2 24 396 418 395 419 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF419-204 - 464 2.6e-78 255.2 95.3 12 13 2.6e-10 2e-07 31.1 2.3 1 26 423 448 423 448 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF419-204 - 464 2.6e-78 255.2 95.3 13 13 0.032 25 5.5 0.2 2 12 452 462 451 464 0.87 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZNF419-204 - 464 5.7e-61 199.7 95.7 1 12 3.1 2.4e+03 -0.7 0.1 14 23 76 85 75 94 0.83 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF419-204 - 464 5.7e-61 199.7 95.7 2 12 1.2e-08 9.7e-06 25.8 0.4 1 23 157 179 157 179 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF419-204 - 464 5.7e-61 199.7 95.7 3 12 1.2e-06 0.00091 19.6 0.2 1 23 185 207 185 207 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF419-204 - 464 5.7e-61 199.7 95.7 4 12 4e-08 3.1e-05 24.2 1.0 3 23 215 235 213 235 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF419-204 - 464 5.7e-61 199.7 95.7 5 12 2.7e-07 0.00021 21.6 3.7 1 23 241 263 241 263 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF419-204 - 464 5.7e-61 199.7 95.7 6 12 5.5e-08 4.3e-05 23.7 1.0 1 23 269 291 269 291 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF419-204 - 464 5.7e-61 199.7 95.7 7 12 2.7e-08 2.1e-05 24.7 2.9 1 23 297 319 297 319 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF419-204 - 464 5.7e-61 199.7 95.7 8 12 4e-08 3.1e-05 24.2 4.1 1 23 325 347 325 347 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF419-204 - 464 5.7e-61 199.7 95.7 9 12 2.7e-08 2.1e-05 24.7 1.3 1 23 353 375 353 375 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF419-204 - 464 5.7e-61 199.7 95.7 10 12 1e-07 7.8e-05 22.9 1.6 1 23 381 403 381 403 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF419-204 - 464 5.7e-61 199.7 95.7 11 12 7.4e-08 5.7e-05 23.3 0.8 1 23 409 431 409 431 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF419-204 - 464 5.7e-61 199.7 95.7 12 12 2e-07 0.00016 21.9 4.6 1 23 437 459 437 459 0.98 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZNF419-204 - 464 3.3e-27 92.8 96.0 1 11 2.8e-05 0.022 15.6 0.4 1 23 157 179 157 180 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF419-204 - 464 3.3e-27 92.8 96.0 2 11 0.00027 0.21 12.5 0.2 1 23 185 207 185 208 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF419-204 - 464 3.3e-27 92.8 96.0 3 11 0.00011 0.089 13.7 0.8 2 23 214 235 213 236 0.91 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF419-204 - 464 3.3e-27 92.8 96.0 4 11 0.00054 0.42 11.6 2.9 1 23 241 263 241 264 0.91 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF419-204 - 464 3.3e-27 92.8 96.0 5 11 3.9e-05 0.03 15.1 0.9 1 23 269 291 269 292 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF419-204 - 464 3.3e-27 92.8 96.0 6 11 6e-05 0.046 14.6 2.7 1 23 297 319 297 320 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF419-204 - 464 3.3e-27 92.8 96.0 7 11 6.4e-05 0.05 14.5 3.7 1 23 325 347 325 348 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF419-204 - 464 3.3e-27 92.8 96.0 8 11 4.3e-05 0.034 15.0 1.1 1 23 353 375 353 376 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF419-204 - 464 3.3e-27 92.8 96.0 9 11 2.5e-05 0.02 15.7 1.0 1 23 381 403 381 404 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF419-204 - 464 3.3e-27 92.8 96.0 10 11 3.3e-05 0.025 15.4 0.8 1 23 409 431 409 432 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF419-204 - 464 3.3e-27 92.8 96.0 11 11 0.0011 0.86 10.6 3.3 1 23 437 459 437 460 0.94 C2H2-type zinc finger KRAB PF01352.27 42 ZNF419-204 - 464 5.5e-24 83.5 0.9 1 1 1.3e-26 9.8e-24 82.7 0.9 2 42 14 54 13 54 0.99 KRAB box zf-C2H2_8 PF15909.5 98 ZNF419-204 - 464 5.8e-11 42.6 50.0 1 6 0.00017 0.14 12.5 2.9 29 88 149 206 125 212 0.76 C2H2-type zinc ribbon zf-C2H2_8 PF15909.5 98 ZNF419-204 - 464 5.8e-11 42.6 50.0 2 6 0.00099 0.77 10.1 2.0 38 88 215 262 206 268 0.85 C2H2-type zinc ribbon zf-C2H2_8 PF15909.5 98 ZNF419-204 - 464 5.8e-11 42.6 50.0 3 6 0.0007 0.54 10.6 2.6 37 89 270 319 261 324 0.78 C2H2-type zinc ribbon zf-C2H2_8 PF15909.5 98 ZNF419-204 - 464 5.8e-11 42.6 50.0 4 6 3e-05 0.023 15.0 3.0 36 89 325 375 319 381 0.86 C2H2-type zinc ribbon zf-C2H2_8 PF15909.5 98 ZNF419-204 - 464 5.8e-11 42.6 50.0 5 6 2e-06 0.0016 18.7 1.2 41 89 384 431 375 436 0.86 C2H2-type zinc ribbon zf-C2H2_8 PF15909.5 98 ZNF419-204 - 464 5.8e-11 42.6 50.0 6 6 0.044 35 4.8 1.8 66 88 436 458 431 464 0.84 C2H2-type zinc ribbon zf-C2H2_6 PF13912.6 27 ZNF419-204 - 464 2.2e-10 40.3 83.8 1 11 0.00027 0.21 11.7 0.4 1 12 156 167 156 172 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF419-204 - 464 2.2e-10 40.3 83.8 2 11 0.00012 0.092 12.8 0.2 2 12 185 195 184 207 0.81 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF419-204 - 464 2.2e-10 40.3 83.8 3 11 0.003 2.3 8.3 1.0 2 22 213 233 213 237 0.83 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF419-204 - 464 2.2e-10 40.3 83.8 4 11 0.0058 4.5 7.4 1.0 2 12 241 251 241 252 0.91 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF419-204 - 464 2.2e-10 40.3 83.8 5 11 5.7e-05 0.045 13.8 1.1 2 24 269 291 269 294 0.89 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF419-204 - 464 2.2e-10 40.3 83.8 6 11 0.015 12 6.1 2.0 2 20 297 315 297 320 0.80 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF419-204 - 464 2.2e-10 40.3 83.8 7 11 0.1 81 3.4 4.2 2 24 325 347 325 350 0.92 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF419-204 - 464 2.2e-10 40.3 83.8 8 11 0.11 82 3.4 1.3 2 11 353 362 353 363 0.87 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF419-204 - 464 2.2e-10 40.3 83.8 9 11 0.0075 5.8 7.0 1.2 2 24 381 403 381 404 0.90 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF419-204 - 464 2.2e-10 40.3 83.8 10 11 0.003 2.4 8.3 0.7 2 20 409 427 409 432 0.79 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF419-204 - 464 2.2e-10 40.3 83.8 11 11 0.0022 1.7 8.7 2.6 2 24 437 459 437 462 0.93 C2H2-type zinc finger zinc_ribbon_15 PF17032.5 86 ZNF419-204 - 464 2.6e-10 40.9 35.9 1 8 0.00075 0.59 10.9 1.3 34 75 153 194 148 201 0.87 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF419-204 - 464 2.6e-10 40.9 35.9 2 8 0.00041 0.32 11.8 0.5 28 78 205 253 194 256 0.77 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF419-204 - 464 2.6e-10 40.9 35.9 3 8 0.0011 0.87 10.4 3.5 26 77 229 280 215 284 0.85 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF419-204 - 464 2.6e-10 40.9 35.9 4 8 0.0011 0.86 10.4 0.9 31 78 262 309 254 312 0.82 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF419-204 - 464 2.6e-10 40.9 35.9 5 8 0.0012 0.9 10.3 1.8 32 75 291 334 284 339 0.86 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF419-204 - 464 2.6e-10 40.9 35.9 6 8 0.00025 0.2 12.4 1.5 26 78 313 365 308 368 0.90 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF419-204 - 464 2.6e-10 40.9 35.9 7 8 0.00028 0.22 12.3 0.9 30 78 345 393 339 396 0.87 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF419-204 - 464 2.6e-10 40.9 35.9 8 8 0.00016 0.12 13.1 0.8 33 78 404 449 395 453 0.86 zinc-ribbon family zf_UBZ PF18439.1 32 ZNF419-204 - 464 4e-10 39.1 46.9 1 11 0.0048 3.7 7.2 0.1 2 12 156 166 155 176 0.83 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF419-204 - 464 4e-10 39.1 46.9 2 11 0.0049 3.8 7.2 0.3 2 12 184 194 183 196 0.87 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF419-204 - 464 4e-10 39.1 46.9 3 11 0.0027 2.1 8.0 0.1 3 21 213 232 212 232 0.90 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF419-204 - 464 4e-10 39.1 46.9 4 11 0.0032 2.5 7.8 0.2 3 15 241 253 239 260 0.77 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF419-204 - 464 4e-10 39.1 46.9 5 11 0.0025 1.9 8.1 0.1 3 20 269 287 267 288 0.83 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF419-204 - 464 4e-10 39.1 46.9 6 11 0.011 8.9 6.0 0.2 3 13 297 307 295 315 0.84 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF419-204 - 464 4e-10 39.1 46.9 7 11 0.0085 6.7 6.4 0.7 3 20 325 343 323 344 0.77 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF419-204 - 464 4e-10 39.1 46.9 8 11 0.11 87 2.8 0.1 3 15 353 365 351 372 0.80 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF419-204 - 464 4e-10 39.1 46.9 9 11 0.0036 2.8 7.6 0.2 3 20 381 399 379 400 0.88 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF419-204 - 464 4e-10 39.1 46.9 10 11 0.1 78 3.0 0.1 3 16 409 423 407 428 0.77 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF419-204 - 464 4e-10 39.1 46.9 11 11 0.066 51 3.6 0.1 3 13 437 447 435 452 0.83 Ubiquitin-Binding Zinc Finger Zn-ribbon_8 PF09723.10 40 ZNF419-204 - 464 2.1e-09 37.3 59.7 1 10 5.7 4.5e+03 -2.1 0.1 31 39 85 94 84 94 0.83 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF419-204 - 464 2.1e-09 37.3 59.7 2 10 0.00019 0.15 12.2 3.4 6 34 157 192 156 197 0.89 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF419-204 - 464 2.1e-09 37.3 59.7 3 10 0.009 7 6.9 0.5 6 19 185 198 182 204 0.85 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF419-204 - 464 2.1e-09 37.3 59.7 4 10 7e-05 0.055 13.6 1.6 6 36 213 250 212 253 0.88 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF419-204 - 464 2.1e-09 37.3 59.7 5 10 3.7e-05 0.029 14.5 2.2 6 34 269 304 268 309 0.92 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF419-204 - 464 2.1e-09 37.3 59.7 6 10 0.0052 4.1 7.6 7.5 6 34 325 360 324 364 0.88 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF419-204 - 464 2.1e-09 37.3 59.7 7 10 0.0051 3.9 7.7 6.2 6 34 353 388 352 392 0.90 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF419-204 - 464 2.1e-09 37.3 59.7 8 10 0.0061 4.7 7.4 5.7 6 34 381 416 380 420 0.79 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF419-204 - 464 2.1e-09 37.3 59.7 9 10 0.00036 0.28 11.3 3.4 6 34 409 444 408 449 0.93 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF419-204 - 464 2.1e-09 37.3 59.7 10 10 0.029 22 5.2 0.8 6 16 437 447 436 453 0.82 Zinc ribbon domain C1_1 PF00130.22 53 ZNF419-204 - 464 3e-08 33.4 48.0 1 8 0.002 1.5 8.7 1.2 11 37 156 193 149 197 0.85 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF419-204 - 464 3e-08 33.4 48.0 2 8 0.00046 0.36 10.7 1.3 1 37 203 249 203 253 0.88 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF419-204 - 464 3e-08 33.4 48.0 3 8 0.0081 6.3 6.8 3.3 2 36 232 276 227 278 0.75 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF419-204 - 464 3e-08 33.4 48.0 4 8 0.0026 2 8.3 2.5 9 38 266 306 258 310 0.77 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF419-204 - 464 3e-08 33.4 48.0 5 8 0.00016 0.13 12.2 5.2 2 36 315 360 315 363 0.88 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF419-204 - 464 3e-08 33.4 48.0 6 8 0.018 14 5.7 0.5 4 23 346 364 342 376 0.72 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF419-204 - 464 3e-08 33.4 48.0 7 8 0.00049 0.38 10.7 1.1 2 38 372 418 371 421 0.83 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF419-204 - 464 3e-08 33.4 48.0 8 8 0.046 36 4.3 1.1 2 23 428 448 427 459 0.74 Phorbol esters/diacylglycerol binding domain (C1 domain) FAM178 PF14816.6 373 ZNF419-204 - 464 1.3e-07 31.0 12.6 1 8 0.00086 0.67 8.9 0.3 21 130 26 131 22 142 0.81 Family of unknown function, FAM178 FAM178 PF14816.6 373 ZNF419-204 - 464 1.3e-07 31.0 12.6 2 8 0.13 1e+02 1.7 0.0 74 102 172 198 138 211 0.75 Family of unknown function, FAM178 FAM178 PF14816.6 373 ZNF419-204 - 464 1.3e-07 31.0 12.6 3 8 0.0053 4.2 6.3 0.1 78 106 230 258 217 279 0.75 Family of unknown function, FAM178 FAM178 PF14816.6 373 ZNF419-204 - 464 1.3e-07 31.0 12.6 4 8 0.08 63 2.4 0.0 72 103 280 311 273 327 0.83 Family of unknown function, FAM178 FAM178 PF14816.6 373 ZNF419-204 - 464 1.3e-07 31.0 12.6 5 8 0.31 2.4e+02 0.4 0.0 81 102 317 338 303 344 0.78 Family of unknown function, FAM178 FAM178 PF14816.6 373 ZNF419-204 - 464 1.3e-07 31.0 12.6 6 8 0.0074 5.8 5.8 0.1 74 104 338 368 330 385 0.78 Family of unknown function, FAM178 FAM178 PF14816.6 373 ZNF419-204 - 464 1.3e-07 31.0 12.6 7 8 0.0013 1 8.3 0.1 73 104 393 424 381 439 0.80 Family of unknown function, FAM178 FAM178 PF14816.6 373 ZNF419-204 - 464 1.3e-07 31.0 12.6 8 8 0.95 7.4e+02 -1.1 0.0 80 103 428 451 422 459 0.82 Family of unknown function, FAM178 # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF419-204.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF419-204.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF419-204.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF419-204.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF419-204.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:05:59 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZNF419-205 - 511 1.2e-77 253.1 95.3 1 13 0.44 3.6e+02 1.9 0.1 3 15 126 138 124 141 0.87 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF419-205 - 511 1.2e-77 253.1 95.3 2 13 0.00079 0.64 10.6 8.0 5 25 178 214 175 215 0.61 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF419-205 - 511 1.2e-77 253.1 95.3 3 13 1.1e-07 9.3e-05 22.7 0.5 2 24 219 241 219 242 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF419-205 - 511 1.2e-77 253.1 95.3 4 13 3.6e-08 2.9e-05 24.3 0.1 4 25 249 270 246 271 0.90 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF419-205 - 511 1.2e-77 253.1 95.3 5 13 3.3e-11 2.7e-08 33.9 2.3 1 26 274 299 274 299 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF419-205 - 511 1.2e-77 253.1 95.3 6 13 1.2e-08 9.5e-06 25.8 0.7 2 24 303 325 302 326 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF419-205 - 511 1.2e-77 253.1 95.3 7 13 4.3e-11 3.5e-08 33.5 2.3 1 26 330 355 330 355 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF419-205 - 511 1.2e-77 253.1 95.3 8 13 3.5e-10 2.8e-07 30.6 0.4 1 25 358 382 358 383 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF419-205 - 511 1.2e-77 253.1 95.3 9 13 6.6e-10 5.4e-07 29.8 1.1 1 24 386 409 386 410 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF419-205 - 511 1.2e-77 253.1 95.3 10 13 5.2e-11 4.3e-08 33.2 0.6 2 25 415 438 414 439 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF419-205 - 511 1.2e-77 253.1 95.3 11 13 4.9e-08 4e-05 23.8 0.7 2 24 443 465 442 466 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF419-205 - 511 1.2e-77 253.1 95.3 12 13 2.8e-10 2.3e-07 30.9 2.3 1 26 470 495 470 495 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF419-205 - 511 1.2e-77 253.1 95.3 13 13 0.034 28 5.4 0.2 2 12 499 509 498 511 0.87 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZNF419-205 - 511 2.1e-60 197.9 95.7 1 12 3.3 2.7e+03 -0.8 0.1 14 23 123 132 122 141 0.83 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF419-205 - 511 2.1e-60 197.9 95.7 2 12 1.3e-08 1.1e-05 25.6 0.4 1 23 204 226 204 226 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF419-205 - 511 2.1e-60 197.9 95.7 3 12 1.3e-06 0.001 19.4 0.2 1 23 232 254 232 254 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF419-205 - 511 2.1e-60 197.9 95.7 4 12 4.3e-08 3.5e-05 24.0 1.0 3 23 262 282 260 282 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF419-205 - 511 2.1e-60 197.9 95.7 5 12 2.8e-07 0.00023 21.4 3.7 1 23 288 310 288 310 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF419-205 - 511 2.1e-60 197.9 95.7 6 12 5.9e-08 4.8e-05 23.6 1.0 1 23 316 338 316 338 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF419-205 - 511 2.1e-60 197.9 95.7 7 12 2.9e-08 2.3e-05 24.6 2.9 1 23 344 366 344 366 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF419-205 - 511 2.1e-60 197.9 95.7 8 12 4.3e-08 3.5e-05 24.0 4.1 1 23 372 394 372 394 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF419-205 - 511 2.1e-60 197.9 95.7 9 12 3e-08 2.4e-05 24.5 1.3 1 23 400 422 400 422 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF419-205 - 511 2.1e-60 197.9 95.7 10 12 1.1e-07 8.8e-05 22.8 1.6 1 23 428 450 428 450 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF419-205 - 511 2.1e-60 197.9 95.7 11 12 7.9e-08 6.5e-05 23.2 0.8 1 23 456 478 456 478 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF419-205 - 511 2.1e-60 197.9 95.7 12 12 2.2e-07 0.00018 21.8 4.6 1 23 484 506 484 506 0.98 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZNF419-205 - 511 1.2e-26 91.0 96.0 1 11 3e-05 0.024 15.4 0.4 1 23 204 226 204 227 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF419-205 - 511 1.2e-26 91.0 96.0 2 11 0.00029 0.23 12.4 0.2 1 23 232 254 232 255 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF419-205 - 511 1.2e-26 91.0 96.0 3 11 0.00012 0.1 13.5 0.8 2 23 261 282 260 283 0.91 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF419-205 - 511 1.2e-26 91.0 96.0 4 11 0.00058 0.48 11.4 2.9 1 23 288 310 288 311 0.91 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF419-205 - 511 1.2e-26 91.0 96.0 5 11 4.2e-05 0.034 15.0 0.9 1 23 316 338 316 339 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF419-205 - 511 1.2e-26 91.0 96.0 6 11 6.4e-05 0.052 14.4 2.7 1 23 344 366 344 367 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF419-205 - 511 1.2e-26 91.0 96.0 7 11 6.9e-05 0.056 14.3 3.7 1 23 372 394 372 395 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF419-205 - 511 1.2e-26 91.0 96.0 8 11 4.6e-05 0.038 14.8 1.1 1 23 400 422 400 423 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF419-205 - 511 1.2e-26 91.0 96.0 9 11 2.7e-05 0.022 15.6 1.0 1 23 428 450 428 451 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF419-205 - 511 1.2e-26 91.0 96.0 10 11 3.5e-05 0.029 15.2 0.8 1 23 456 478 456 479 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF419-205 - 511 1.2e-26 91.0 96.0 11 11 0.0012 0.97 10.4 3.3 1 23 484 506 484 507 0.94 C2H2-type zinc finger KRAB PF01352.27 42 ZNF419-205 - 511 6e-24 83.4 0.9 1 1 1.4e-26 1.1e-23 82.6 0.9 2 42 28 68 27 68 0.99 KRAB box zf-C2H2_8 PF15909.5 98 ZNF419-205 - 511 1.3e-10 41.4 50.1 1 6 0.0002 0.16 12.3 2.9 29 88 196 253 172 259 0.76 C2H2-type zinc ribbon zf-C2H2_8 PF15909.5 98 ZNF419-205 - 511 1.3e-10 41.4 50.1 2 6 0.0011 0.88 9.9 2.0 38 88 262 309 253 315 0.85 C2H2-type zinc ribbon zf-C2H2_8 PF15909.5 98 ZNF419-205 - 511 1.3e-10 41.4 50.1 3 6 0.00079 0.64 10.3 2.6 37 89 317 366 308 371 0.78 C2H2-type zinc ribbon zf-C2H2_8 PF15909.5 98 ZNF419-205 - 511 1.3e-10 41.4 50.1 4 6 3.1e-05 0.025 14.8 3.0 36 89 372 422 366 428 0.86 C2H2-type zinc ribbon zf-C2H2_8 PF15909.5 98 ZNF419-205 - 511 1.3e-10 41.4 50.1 5 6 2.2e-06 0.0018 18.5 1.2 41 89 431 478 422 483 0.86 C2H2-type zinc ribbon zf-C2H2_8 PF15909.5 98 ZNF419-205 - 511 1.3e-10 41.4 50.1 6 6 0.049 40 4.6 1.8 66 88 483 505 478 511 0.84 C2H2-type zinc ribbon zinc_ribbon_15 PF17032.5 86 ZNF419-205 - 511 4.4e-10 40.2 35.6 1 7 0.00091 0.74 10.6 1.3 34 75 200 241 195 246 0.87 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF419-205 - 511 4.4e-10 40.2 35.6 2 7 0.00034 0.28 12.0 2.2 26 75 276 325 241 331 0.69 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF419-205 - 511 4.4e-10 40.2 35.6 3 7 0.0015 1.2 9.9 1.4 31 78 309 356 299 362 0.83 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF419-205 - 511 4.4e-10 40.2 35.6 4 7 0.0012 1 10.2 1.9 31 75 337 381 327 386 0.87 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF419-205 - 511 4.4e-10 40.2 35.6 5 7 0.00027 0.22 12.3 1.4 26 78 360 412 356 415 0.90 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF419-205 - 511 4.4e-10 40.2 35.6 6 7 0.0003 0.25 12.1 0.9 30 78 392 440 386 443 0.87 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF419-205 - 511 4.4e-10 40.2 35.6 7 7 0.00017 0.14 12.9 0.8 33 78 451 496 442 500 0.86 zinc-ribbon family zf-C2H2_6 PF13912.6 27 ZNF419-205 - 511 7.5e-10 38.6 83.8 1 11 0.00028 0.23 11.5 0.4 1 12 203 214 203 219 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF419-205 - 511 7.5e-10 38.6 83.8 2 11 0.00013 0.1 12.6 0.2 2 12 232 242 231 254 0.81 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF419-205 - 511 7.5e-10 38.6 83.8 3 11 0.0032 2.6 8.1 1.0 2 22 260 280 260 284 0.83 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF419-205 - 511 7.5e-10 38.6 83.8 4 11 0.0061 5 7.2 1.0 2 12 288 298 288 299 0.91 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF419-205 - 511 7.5e-10 38.6 83.8 5 11 6.2e-05 0.05 13.6 1.1 2 24 316 338 316 341 0.89 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF419-205 - 511 7.5e-10 38.6 83.8 6 11 0.016 13 5.9 2.0 2 20 344 362 344 367 0.80 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF419-205 - 511 7.5e-10 38.6 83.8 7 11 0.11 91 3.2 4.2 2 24 372 394 372 397 0.92 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF419-205 - 511 7.5e-10 38.6 83.8 8 11 0.11 91 3.2 1.3 2 11 400 409 400 410 0.87 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF419-205 - 511 7.5e-10 38.6 83.8 9 11 0.008 6.5 6.9 1.2 2 24 428 450 428 451 0.90 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF419-205 - 511 7.5e-10 38.6 83.8 10 11 0.0032 2.6 8.1 0.7 2 20 456 474 456 479 0.79 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF419-205 - 511 7.5e-10 38.6 83.8 11 11 0.0024 1.9 8.6 2.6 2 24 484 506 484 509 0.93 C2H2-type zinc finger zf_UBZ PF18439.1 32 ZNF419-205 - 511 1.1e-09 37.7 46.7 1 11 0.0051 4.2 7.1 0.1 2 12 203 213 202 223 0.83 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF419-205 - 511 1.1e-09 37.7 46.7 2 11 0.0052 4.3 7.0 0.3 2 12 231 241 230 243 0.87 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF419-205 - 511 1.1e-09 37.7 46.7 3 11 0.0029 2.4 7.8 0.1 3 21 260 279 259 279 0.90 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF419-205 - 511 1.1e-09 37.7 46.7 4 11 0.0034 2.8 7.6 0.2 3 15 288 300 286 307 0.77 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF419-205 - 511 1.1e-09 37.7 46.7 5 11 0.0026 2.1 8.0 0.1 3 20 316 334 314 335 0.83 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF419-205 - 511 1.1e-09 37.7 46.7 6 11 0.013 11 5.7 0.1 3 13 344 354 342 361 0.86 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF419-205 - 511 1.1e-09 37.7 46.7 7 11 0.0091 7.4 6.3 0.7 3 20 372 390 370 391 0.77 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF419-205 - 511 1.1e-09 37.7 46.7 8 11 0.12 97 2.7 0.1 3 15 400 412 398 419 0.80 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF419-205 - 511 1.1e-09 37.7 46.7 9 11 0.0038 3.1 7.5 0.2 3 20 428 446 426 447 0.88 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF419-205 - 511 1.1e-09 37.7 46.7 10 11 0.11 87 2.8 0.1 3 16 456 470 454 475 0.77 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF419-205 - 511 1.1e-09 37.7 46.7 11 11 0.07 57 3.4 0.1 3 13 484 494 482 499 0.83 Ubiquitin-Binding Zinc Finger Zn-ribbon_8 PF09723.10 40 ZNF419-205 - 511 9.7e-09 35.2 60.6 1 10 6.1 5e+03 -2.3 0.1 31 39 132 141 131 141 0.83 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF419-205 - 511 9.7e-09 35.2 60.6 2 10 0.00029 0.24 11.6 3.9 6 34 204 239 203 244 0.89 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF419-205 - 511 9.7e-09 35.2 60.6 3 10 0.0095 7.7 6.7 0.5 6 19 232 245 230 251 0.84 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF419-205 - 511 9.7e-09 35.2 60.6 4 10 9e-05 0.074 13.2 1.8 6 36 260 297 259 299 0.88 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF419-205 - 511 9.7e-09 35.2 60.6 5 10 4e-05 0.032 14.3 2.2 6 34 316 351 315 356 0.92 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF419-205 - 511 9.7e-09 35.2 60.6 6 10 0.0045 3.6 7.8 7.1 6 34 372 407 371 410 0.89 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF419-205 - 511 9.7e-09 35.2 60.6 7 10 0.0064 5.2 7.3 6.4 6 34 400 435 399 439 0.90 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF419-205 - 511 9.7e-09 35.2 60.6 8 10 0.0067 5.5 7.2 5.7 6 34 428 463 426 467 0.79 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF419-205 - 511 9.7e-09 35.2 60.6 9 10 0.00039 0.32 11.1 3.4 6 34 456 491 455 495 0.93 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF419-205 - 511 9.7e-09 35.2 60.6 10 10 0.033 27 5.0 0.8 6 15 484 493 483 499 0.82 Zinc ribbon domain C1_1 PF00130.22 53 ZNF419-205 - 511 3.8e-08 33.1 47.0 1 7 0.0021 1.7 8.6 1.1 10 37 202 240 195 242 0.85 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF419-205 - 511 3.8e-08 33.1 47.0 2 7 0.0058 4.7 7.2 5.3 1 38 250 297 250 325 0.74 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF419-205 - 511 3.8e-08 33.1 47.0 3 7 0.0025 2 8.4 2.3 9 38 313 353 306 357 0.77 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF419-205 - 511 3.8e-08 33.1 47.0 4 7 0.00015 0.12 12.3 5.0 2 36 362 407 362 410 0.88 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF419-205 - 511 3.8e-08 33.1 47.0 5 7 0.021 17 5.4 0.3 4 23 393 411 389 419 0.74 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF419-205 - 511 3.8e-08 33.1 47.0 6 7 0.00046 0.37 10.7 0.9 2 38 419 465 417 468 0.83 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF419-205 - 511 3.8e-08 33.1 47.0 7 7 0.05 41 4.2 1.1 2 23 475 495 474 506 0.74 Phorbol esters/diacylglycerol binding domain (C1 domain) # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF419-205.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF419-205.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF419-205.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF419-205.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF419-205.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:05:59 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZNF419-206 - 498 8.2e-78 253.6 95.3 1 13 0.45 3.5e+02 1.9 0.1 3 15 113 125 111 128 0.87 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF419-206 - 498 8.2e-78 253.6 95.3 2 13 0.00079 0.62 10.6 8.0 5 25 165 201 162 202 0.61 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF419-206 - 498 8.2e-78 253.6 95.3 3 13 1.2e-07 9.1e-05 22.7 0.5 2 24 206 228 206 229 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF419-206 - 498 8.2e-78 253.6 95.3 4 13 3.6e-08 2.8e-05 24.3 0.1 4 25 236 257 233 258 0.90 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF419-206 - 498 8.2e-78 253.6 95.3 5 13 3.4e-11 2.6e-08 33.9 2.3 1 26 261 286 261 286 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF419-206 - 498 8.2e-78 253.6 95.3 6 13 1.2e-08 9.3e-06 25.9 0.7 2 24 290 312 289 313 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF419-206 - 498 8.2e-78 253.6 95.3 7 13 4.4e-11 3.4e-08 33.5 2.3 1 26 317 342 317 342 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF419-206 - 498 8.2e-78 253.6 95.3 8 13 3.5e-10 2.8e-07 30.7 0.4 1 25 345 369 345 370 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF419-206 - 498 8.2e-78 253.6 95.3 9 13 6.7e-10 5.2e-07 29.8 1.1 1 24 373 396 373 397 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF419-206 - 498 8.2e-78 253.6 95.3 10 13 5.3e-11 4.1e-08 33.3 0.6 2 25 402 425 401 426 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF419-206 - 498 8.2e-78 253.6 95.3 11 13 5e-08 3.9e-05 23.9 0.7 2 24 430 452 429 453 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF419-206 - 498 8.2e-78 253.6 95.3 12 13 2.8e-10 2.2e-07 31.0 2.3 1 26 457 482 457 482 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF419-206 - 498 8.2e-78 253.6 95.3 13 13 0.035 27 5.4 0.2 2 12 486 496 485 498 0.87 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZNF419-206 - 498 1.5e-60 198.4 95.7 1 12 3.4 2.6e+03 -0.8 0.1 14 23 110 119 109 128 0.83 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF419-206 - 498 1.5e-60 198.4 95.7 2 12 1.4e-08 1.1e-05 25.6 0.4 1 23 191 213 191 213 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF419-206 - 498 1.5e-60 198.4 95.7 3 12 1.3e-06 0.00099 19.4 0.2 1 23 219 241 219 241 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF419-206 - 498 1.5e-60 198.4 95.7 4 12 4.4e-08 3.4e-05 24.1 1.0 3 23 249 269 247 269 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF419-206 - 498 1.5e-60 198.4 95.7 5 12 2.9e-07 0.00023 21.5 3.7 1 23 275 297 275 297 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF419-206 - 498 1.5e-60 198.4 95.7 6 12 6e-08 4.7e-05 23.6 1.0 1 23 303 325 303 325 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF419-206 - 498 1.5e-60 198.4 95.7 7 12 2.9e-08 2.3e-05 24.6 2.9 1 23 331 353 331 353 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF419-206 - 498 1.5e-60 198.4 95.7 8 12 4.4e-08 3.4e-05 24.1 4.1 1 23 359 381 359 381 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF419-206 - 498 1.5e-60 198.4 95.7 9 12 3e-08 2.3e-05 24.6 1.3 1 23 387 409 387 409 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF419-206 - 498 1.5e-60 198.4 95.7 10 12 1.1e-07 8.5e-05 22.8 1.6 1 23 415 437 415 437 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF419-206 - 498 1.5e-60 198.4 95.7 11 12 8e-08 6.3e-05 23.2 0.8 1 23 443 465 443 465 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF419-206 - 498 1.5e-60 198.4 95.7 12 12 2.2e-07 0.00017 21.8 4.6 1 23 471 493 471 493 0.98 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZNF419-206 - 498 8.8e-27 91.5 96.0 1 11 3e-05 0.024 15.5 0.4 1 23 191 213 191 214 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF419-206 - 498 8.8e-27 91.5 96.0 2 11 0.00029 0.23 12.4 0.2 1 23 219 241 219 242 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF419-206 - 498 8.8e-27 91.5 96.0 3 11 0.00012 0.097 13.6 0.8 2 23 248 269 247 270 0.91 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF419-206 - 498 8.8e-27 91.5 96.0 4 11 0.00059 0.46 11.5 2.9 1 23 275 297 275 298 0.91 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF419-206 - 498 8.8e-27 91.5 96.0 5 11 4.2e-05 0.033 15.0 0.9 1 23 303 325 303 326 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF419-206 - 498 8.8e-27 91.5 96.0 6 11 6.5e-05 0.051 14.4 2.7 1 23 331 353 331 354 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF419-206 - 498 8.8e-27 91.5 96.0 7 11 7e-05 0.054 14.3 3.7 1 23 359 381 359 382 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF419-206 - 498 8.8e-27 91.5 96.0 8 11 4.7e-05 0.037 14.9 1.1 1 23 387 409 387 410 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF419-206 - 498 8.8e-27 91.5 96.0 9 11 2.8e-05 0.022 15.6 1.0 1 23 415 437 415 438 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF419-206 - 498 8.8e-27 91.5 96.0 10 11 3.5e-05 0.028 15.3 0.8 1 23 443 465 443 466 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF419-206 - 498 8.8e-27 91.5 96.0 11 11 0.0012 0.94 10.5 3.3 1 23 471 493 471 494 0.94 C2H2-type zinc finger KRAB PF01352.27 42 ZNF419-206 - 498 5.9e-24 83.4 0.9 1 1 1.4e-26 1.1e-23 82.6 0.9 2 42 15 55 14 55 0.99 KRAB box zf-C2H2_8 PF15909.5 98 ZNF419-206 - 498 1e-10 41.8 50.0 1 6 0.0002 0.16 12.3 2.9 29 88 183 240 159 246 0.76 C2H2-type zinc ribbon zf-C2H2_8 PF15909.5 98 ZNF419-206 - 498 1e-10 41.8 50.0 2 6 0.0011 0.83 10.0 2.0 38 88 249 296 240 302 0.85 C2H2-type zinc ribbon zf-C2H2_8 PF15909.5 98 ZNF419-206 - 498 1e-10 41.8 50.0 3 6 0.00076 0.59 10.5 2.6 37 89 304 353 295 358 0.78 C2H2-type zinc ribbon zf-C2H2_8 PF15909.5 98 ZNF419-206 - 498 1e-10 41.8 50.0 4 6 3.1e-05 0.024 14.9 3.0 36 89 359 409 353 415 0.86 C2H2-type zinc ribbon zf-C2H2_8 PF15909.5 98 ZNF419-206 - 498 1e-10 41.8 50.0 5 6 2.2e-06 0.0017 18.6 1.2 41 89 418 465 409 470 0.86 C2H2-type zinc ribbon zf-C2H2_8 PF15909.5 98 ZNF419-206 - 498 1e-10 41.8 50.0 6 6 0.05 39 4.6 1.9 66 88 470 492 465 498 0.84 C2H2-type zinc ribbon zinc_ribbon_15 PF17032.5 86 ZNF419-206 - 498 3.5e-10 40.5 35.6 1 7 0.00076 0.59 10.9 1.2 34 75 187 228 180 234 0.87 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF419-206 - 498 3.5e-10 40.5 35.6 2 7 0.00043 0.33 11.7 0.5 28 78 239 287 228 290 0.78 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF419-206 - 498 3.5e-10 40.5 35.6 3 7 0.0014 1.1 10.1 3.7 26 78 263 315 249 321 0.85 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF419-206 - 498 3.5e-10 40.5 35.6 4 7 0.0017 1.3 9.8 1.2 32 78 297 343 289 345 0.82 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF419-206 - 498 3.5e-10 40.5 35.6 5 7 0.0014 1.1 10.1 2.0 31 75 324 368 316 373 0.87 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF419-206 - 498 3.5e-10 40.5 35.6 6 7 0.0011 0.87 10.4 4.3 29 78 350 399 345 430 0.55 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF419-206 - 498 3.5e-10 40.5 35.6 7 7 0.00018 0.14 12.9 0.8 34 78 439 483 430 487 0.86 zinc-ribbon family zf-C2H2_6 PF13912.6 27 ZNF419-206 - 498 5.3e-10 39.0 83.8 1 11 0.00029 0.22 11.5 0.4 1 12 190 201 190 206 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF419-206 - 498 5.3e-10 39.0 83.8 2 11 0.00013 0.1 12.7 0.2 2 12 219 229 218 241 0.81 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF419-206 - 498 5.3e-10 39.0 83.8 3 11 0.0033 2.5 8.2 1.0 2 22 247 267 247 271 0.83 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF419-206 - 498 5.3e-10 39.0 83.8 4 11 0.0062 4.9 7.3 1.0 2 12 275 285 275 286 0.91 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF419-206 - 498 5.3e-10 39.0 83.8 5 11 6.2e-05 0.049 13.7 1.1 2 24 303 325 303 328 0.89 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF419-206 - 498 5.3e-10 39.0 83.8 6 11 0.016 13 6.0 2.0 2 20 331 349 331 354 0.80 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF419-206 - 498 5.3e-10 39.0 83.8 7 11 0.11 88 3.3 4.2 2 24 359 381 359 384 0.92 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF419-206 - 498 5.3e-10 39.0 83.8 8 11 0.11 89 3.3 1.3 2 11 387 396 387 397 0.87 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF419-206 - 498 5.3e-10 39.0 83.8 9 11 0.0081 6.3 6.9 1.2 2 24 415 437 415 438 0.90 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF419-206 - 498 5.3e-10 39.0 83.8 10 11 0.0033 2.6 8.2 0.7 2 20 443 461 443 466 0.79 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF419-206 - 498 5.3e-10 39.0 83.8 11 11 0.0024 1.9 8.6 2.6 2 24 471 493 471 496 0.93 C2H2-type zinc finger zf_UBZ PF18439.1 32 ZNF419-206 - 498 8.1e-10 38.1 46.7 1 11 0.0052 4 7.1 0.1 2 12 190 200 189 210 0.83 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF419-206 - 498 8.1e-10 38.1 46.7 2 11 0.0053 4.1 7.1 0.3 2 12 218 228 217 230 0.87 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF419-206 - 498 8.1e-10 38.1 46.7 3 11 0.0029 2.3 7.9 0.1 3 21 247 266 246 266 0.90 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF419-206 - 498 8.1e-10 38.1 46.7 4 11 0.0034 2.7 7.7 0.2 3 15 275 287 273 294 0.77 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF419-206 - 498 8.1e-10 38.1 46.7 5 11 0.0027 2.1 8.0 0.1 3 20 303 321 301 322 0.83 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF419-206 - 498 8.1e-10 38.1 46.7 6 11 0.013 11 5.8 0.1 3 13 331 341 329 348 0.86 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF419-206 - 498 8.1e-10 38.1 46.7 7 11 0.0093 7.2 6.3 0.7 3 20 359 377 357 378 0.77 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF419-206 - 498 8.1e-10 38.1 46.7 8 11 0.12 94 2.7 0.1 3 15 387 399 385 406 0.80 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF419-206 - 498 8.1e-10 38.1 46.7 9 11 0.0039 3 7.5 0.2 3 20 415 433 413 434 0.88 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF419-206 - 498 8.1e-10 38.1 46.7 10 11 0.11 85 2.9 0.1 3 16 443 457 441 462 0.77 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF419-206 - 498 8.1e-10 38.1 46.7 11 11 0.071 56 3.5 0.1 3 13 471 481 469 486 0.83 Ubiquitin-Binding Zinc Finger Zn-ribbon_8 PF09723.10 40 ZNF419-206 - 498 7.4e-09 35.6 60.5 1 9 6.2 4.8e+03 -2.2 0.1 31 39 119 128 118 128 0.83 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF419-206 - 498 7.4e-09 35.6 60.5 2 9 0.00032 0.25 11.5 4.0 6 34 191 226 190 231 0.89 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF419-206 - 498 7.4e-09 35.6 60.5 3 9 0.0096 7.5 6.8 0.5 6 19 219 232 217 238 0.84 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF419-206 - 498 7.4e-09 35.6 60.5 4 9 9.1e-05 0.071 13.2 1.8 6 36 247 284 246 286 0.88 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF419-206 - 498 7.4e-09 35.6 60.5 5 9 4e-05 0.031 14.4 2.2 6 34 303 338 302 343 0.92 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF419-206 - 498 7.4e-09 35.6 60.5 6 9 0.0041 3.2 8.0 7.0 6 34 359 394 358 397 0.89 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF419-206 - 498 7.4e-09 35.6 60.5 7 9 0.0062 4.9 7.4 6.4 6 34 387 422 386 426 0.90 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF419-206 - 498 7.4e-09 35.6 60.5 8 9 0.0067 5.2 7.3 5.7 6 34 415 450 413 454 0.79 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF419-206 - 498 7.4e-09 35.6 60.5 9 9 0.00038 0.29 11.3 3.3 6 34 443 478 442 483 0.93 Zinc ribbon domain C1_1 PF00130.22 53 ZNF419-206 - 498 5.9e-08 32.5 48.0 1 7 0.0022 1.7 8.6 1.1 10 37 189 227 182 229 0.85 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF419-206 - 498 5.9e-08 32.5 48.0 2 7 0.007 5.4 7.0 5.6 1 38 237 284 237 312 0.74 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF419-206 - 498 5.9e-08 32.5 48.0 3 7 0.0025 2 8.4 2.3 9 38 300 340 293 344 0.77 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF419-206 - 498 5.9e-08 32.5 48.0 4 7 0.00017 0.13 12.2 5.2 2 36 349 394 349 398 0.88 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF419-206 - 498 5.9e-08 32.5 48.0 5 7 0.019 15 5.6 0.3 4 23 380 398 377 408 0.73 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF419-206 - 498 5.9e-08 32.5 48.0 6 7 0.00054 0.42 10.5 1.1 2 38 406 452 405 455 0.82 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF419-206 - 498 5.9e-08 32.5 48.0 7 7 0.051 39 4.2 1.1 2 23 462 482 461 493 0.74 Phorbol esters/diacylglycerol binding domain (C1 domain) # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF419-206.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF419-206.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF419-206.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF419-206.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF419-206.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:06:00 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZNF419-207 - 497 8e-78 253.7 95.3 1 13 0.45 3.5e+02 1.9 0.1 3 15 112 124 110 127 0.87 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF419-207 - 497 8e-78 253.7 95.3 2 13 0.00079 0.62 10.6 8.0 5 25 164 200 161 201 0.61 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF419-207 - 497 8e-78 253.7 95.3 3 13 1.2e-07 9e-05 22.7 0.5 2 24 205 227 205 228 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF419-207 - 497 8e-78 253.7 95.3 4 13 3.6e-08 2.8e-05 24.3 0.1 4 25 235 256 232 257 0.90 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF419-207 - 497 8e-78 253.7 95.3 5 13 3.4e-11 2.6e-08 33.9 2.3 1 26 260 285 260 285 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF419-207 - 497 8e-78 253.7 95.3 6 13 1.2e-08 9.2e-06 25.9 0.7 2 24 289 311 288 312 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF419-207 - 497 8e-78 253.7 95.3 7 13 4.4e-11 3.4e-08 33.5 2.3 1 26 316 341 316 341 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF419-207 - 497 8e-78 253.7 95.3 8 13 3.5e-10 2.8e-07 30.7 0.4 1 25 344 368 344 369 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF419-207 - 497 8e-78 253.7 95.3 9 13 6.7e-10 5.2e-07 29.8 1.1 1 24 372 395 372 396 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF419-207 - 497 8e-78 253.7 95.3 10 13 5.3e-11 4.1e-08 33.3 0.6 2 25 401 424 400 425 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF419-207 - 497 8e-78 253.7 95.3 11 13 5e-08 3.9e-05 23.9 0.7 2 24 429 451 428 452 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF419-207 - 497 8e-78 253.7 95.3 12 13 2.8e-10 2.2e-07 31.0 2.3 1 26 456 481 456 481 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF419-207 - 497 8e-78 253.7 95.3 13 13 0.035 27 5.4 0.2 2 12 485 495 484 497 0.87 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZNF419-207 - 497 1.5e-60 198.4 95.7 1 12 3.4 2.6e+03 -0.8 0.1 14 23 109 118 108 127 0.83 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF419-207 - 497 1.5e-60 198.4 95.7 2 12 1.4e-08 1.1e-05 25.7 0.4 1 23 190 212 190 212 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF419-207 - 497 1.5e-60 198.4 95.7 3 12 1.3e-06 0.00099 19.4 0.2 1 23 218 240 218 240 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF419-207 - 497 1.5e-60 198.4 95.7 4 12 4.4e-08 3.4e-05 24.1 1.0 3 23 248 268 246 268 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF419-207 - 497 1.5e-60 198.4 95.7 5 12 2.9e-07 0.00022 21.5 3.7 1 23 274 296 274 296 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF419-207 - 497 1.5e-60 198.4 95.7 6 12 6e-08 4.7e-05 23.6 1.0 1 23 302 324 302 324 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF419-207 - 497 1.5e-60 198.4 95.7 7 12 2.9e-08 2.3e-05 24.6 2.9 1 23 330 352 330 352 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF419-207 - 497 1.5e-60 198.4 95.7 8 12 4.3e-08 3.4e-05 24.1 4.1 1 23 358 380 358 380 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF419-207 - 497 1.5e-60 198.4 95.7 9 12 3e-08 2.3e-05 24.6 1.3 1 23 386 408 386 408 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF419-207 - 497 1.5e-60 198.4 95.7 10 12 1.1e-07 8.5e-05 22.8 1.6 1 23 414 436 414 436 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF419-207 - 497 1.5e-60 198.4 95.7 11 12 8e-08 6.2e-05 23.2 0.8 1 23 442 464 442 464 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF419-207 - 497 1.5e-60 198.4 95.7 12 12 2.2e-07 0.00017 21.8 4.6 1 23 470 492 470 492 0.98 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZNF419-207 - 497 8.5e-27 91.5 96.0 1 11 3e-05 0.024 15.5 0.4 1 23 190 212 190 213 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF419-207 - 497 8.5e-27 91.5 96.0 2 11 0.00029 0.22 12.4 0.2 1 23 218 240 218 241 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF419-207 - 497 8.5e-27 91.5 96.0 3 11 0.00012 0.096 13.6 0.8 2 23 247 268 246 269 0.91 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF419-207 - 497 8.5e-27 91.5 96.0 4 11 0.00059 0.46 11.5 2.9 1 23 274 296 274 297 0.91 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF419-207 - 497 8.5e-27 91.5 96.0 5 11 4.2e-05 0.033 15.0 0.9 1 23 302 324 302 325 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF419-207 - 497 8.5e-27 91.5 96.0 6 11 6.5e-05 0.051 14.4 2.7 1 23 330 352 330 353 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF419-207 - 497 8.5e-27 91.5 96.0 7 11 7e-05 0.054 14.3 3.7 1 23 358 380 358 381 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF419-207 - 497 8.5e-27 91.5 96.0 8 11 4.7e-05 0.037 14.9 1.1 1 23 386 408 386 409 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF419-207 - 497 8.5e-27 91.5 96.0 9 11 2.8e-05 0.021 15.6 1.0 1 23 414 436 414 437 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF419-207 - 497 8.5e-27 91.5 96.0 10 11 3.5e-05 0.028 15.3 0.8 1 23 442 464 442 465 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF419-207 - 497 8.5e-27 91.5 96.0 11 11 0.0012 0.94 10.5 3.3 1 23 470 492 470 493 0.94 C2H2-type zinc finger KRAB PF01352.27 42 ZNF419-207 - 497 5.9e-24 83.4 0.9 1 1 1.4e-26 1.1e-23 82.6 0.9 2 42 14 54 13 54 0.99 KRAB box zf-C2H2_8 PF15909.5 98 ZNF419-207 - 497 9.9e-11 41.8 50.0 1 6 0.0002 0.16 12.3 2.9 29 88 182 239 158 245 0.76 C2H2-type zinc ribbon zf-C2H2_8 PF15909.5 98 ZNF419-207 - 497 9.9e-11 41.8 50.0 2 6 0.0011 0.83 10.0 2.0 38 88 248 295 239 301 0.85 C2H2-type zinc ribbon zf-C2H2_8 PF15909.5 98 ZNF419-207 - 497 9.9e-11 41.8 50.0 3 6 0.00076 0.59 10.5 2.6 37 89 303 352 294 357 0.78 C2H2-type zinc ribbon zf-C2H2_8 PF15909.5 98 ZNF419-207 - 497 9.9e-11 41.8 50.0 4 6 3.1e-05 0.024 14.9 3.0 36 89 358 408 352 414 0.86 C2H2-type zinc ribbon zf-C2H2_8 PF15909.5 98 ZNF419-207 - 497 9.9e-11 41.8 50.0 5 6 2.2e-06 0.0017 18.6 1.2 41 89 417 464 408 469 0.86 C2H2-type zinc ribbon zf-C2H2_8 PF15909.5 98 ZNF419-207 - 497 9.9e-11 41.8 50.0 6 6 0.05 39 4.6 1.9 66 88 469 491 464 497 0.84 C2H2-type zinc ribbon zinc_ribbon_15 PF17032.5 86 ZNF419-207 - 497 3.3e-10 40.6 35.5 1 7 0.0039 3 8.6 3.8 35 75 187 227 179 260 0.83 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF419-207 - 497 3.3e-10 40.6 35.5 2 7 0.00042 0.33 11.7 0.4 28 78 238 286 227 289 0.78 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF419-207 - 497 3.3e-10 40.6 35.5 3 7 0.0013 1 10.2 3.7 26 78 262 314 248 320 0.85 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF419-207 - 497 3.3e-10 40.6 35.5 4 7 0.0017 1.3 9.8 1.1 34 78 298 342 289 344 0.82 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF419-207 - 497 3.3e-10 40.6 35.5 5 7 0.0014 1.1 10.1 2.0 31 75 323 367 315 372 0.87 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF419-207 - 497 3.3e-10 40.6 35.5 6 7 0.0011 0.85 10.4 4.3 29 78 349 398 344 429 0.55 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF419-207 - 497 3.3e-10 40.6 35.5 7 7 0.00017 0.14 13.0 0.8 33 78 437 482 428 486 0.86 zinc-ribbon family zf-C2H2_6 PF13912.6 27 ZNF419-207 - 497 5.2e-10 39.1 83.8 1 11 0.00029 0.22 11.5 0.4 1 12 189 200 189 205 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF419-207 - 497 5.2e-10 39.1 83.8 2 11 0.00013 0.099 12.7 0.2 2 12 218 228 217 240 0.81 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF419-207 - 497 5.2e-10 39.1 83.8 3 11 0.0032 2.5 8.2 1.0 2 22 246 266 246 270 0.83 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF419-207 - 497 5.2e-10 39.1 83.8 4 11 0.0062 4.9 7.3 1.0 2 12 274 284 274 285 0.91 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF419-207 - 497 5.2e-10 39.1 83.8 5 11 6.2e-05 0.049 13.7 1.1 2 24 302 324 302 327 0.89 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF419-207 - 497 5.2e-10 39.1 83.8 6 11 0.016 13 6.0 2.0 2 20 330 348 330 353 0.80 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF419-207 - 497 5.2e-10 39.1 83.8 7 11 0.11 88 3.3 4.2 2 24 358 380 358 383 0.92 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF419-207 - 497 5.2e-10 39.1 83.8 8 11 0.11 89 3.3 1.3 2 11 386 395 386 396 0.87 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF419-207 - 497 5.2e-10 39.1 83.8 9 11 0.0081 6.3 6.9 1.2 2 24 414 436 414 437 0.90 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF419-207 - 497 5.2e-10 39.1 83.8 10 11 0.0033 2.6 8.2 0.7 2 20 442 460 442 465 0.79 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF419-207 - 497 5.2e-10 39.1 83.8 11 11 0.0024 1.9 8.6 2.6 2 24 470 492 470 495 0.93 C2H2-type zinc finger zf_UBZ PF18439.1 32 ZNF419-207 - 497 7.9e-10 38.2 46.7 1 11 0.0052 4 7.1 0.1 2 12 189 199 188 209 0.83 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF419-207 - 497 7.9e-10 38.2 46.7 2 11 0.0053 4.1 7.1 0.3 2 12 217 227 216 229 0.87 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF419-207 - 497 7.9e-10 38.2 46.7 3 11 0.0029 2.3 7.9 0.1 3 21 246 265 245 265 0.90 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF419-207 - 497 7.9e-10 38.2 46.7 4 11 0.0034 2.7 7.7 0.2 3 15 274 286 272 293 0.77 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF419-207 - 497 7.9e-10 38.2 46.7 5 11 0.0027 2.1 8.0 0.1 3 20 302 320 300 321 0.83 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF419-207 - 497 7.9e-10 38.2 46.7 6 11 0.013 10 5.8 0.1 3 13 330 340 328 347 0.86 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF419-207 - 497 7.9e-10 38.2 46.7 7 11 0.0092 7.2 6.3 0.7 3 20 358 376 356 377 0.77 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF419-207 - 497 7.9e-10 38.2 46.7 8 11 0.12 94 2.7 0.1 3 15 386 398 384 405 0.80 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF419-207 - 497 7.9e-10 38.2 46.7 9 11 0.0039 3 7.5 0.2 3 20 414 432 412 433 0.88 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF419-207 - 497 7.9e-10 38.2 46.7 10 11 0.11 85 2.9 0.1 3 16 442 456 440 461 0.77 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF419-207 - 497 7.9e-10 38.2 46.7 11 11 0.071 55 3.5 0.1 3 13 470 480 468 485 0.83 Ubiquitin-Binding Zinc Finger Zn-ribbon_8 PF09723.10 40 ZNF419-207 - 497 7.2e-09 35.6 60.5 1 9 6.2 4.8e+03 -2.2 0.1 31 39 118 127 117 127 0.83 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF419-207 - 497 7.2e-09 35.6 60.5 2 9 0.00032 0.25 11.5 4.0 6 34 190 225 189 230 0.89 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF419-207 - 497 7.2e-09 35.6 60.5 3 9 0.0095 7.4 6.8 0.5 6 19 218 231 216 237 0.84 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF419-207 - 497 7.2e-09 35.6 60.5 4 9 9.1e-05 0.071 13.2 1.8 6 36 246 283 245 285 0.88 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF419-207 - 497 7.2e-09 35.6 60.5 5 9 4e-05 0.031 14.4 2.2 6 34 302 337 301 342 0.92 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF419-207 - 497 7.2e-09 35.6 60.5 6 9 0.0041 3.2 8.0 7.0 6 34 358 393 357 396 0.89 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF419-207 - 497 7.2e-09 35.6 60.5 7 9 0.0062 4.9 7.4 6.4 6 34 386 421 385 425 0.90 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF419-207 - 497 7.2e-09 35.6 60.5 8 9 0.0067 5.2 7.3 5.7 6 34 414 449 412 453 0.79 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF419-207 - 497 7.2e-09 35.6 60.5 9 9 0.00037 0.29 11.3 3.3 6 34 442 477 441 482 0.93 Zinc ribbon domain C1_1 PF00130.22 53 ZNF419-207 - 497 4.9e-08 32.7 47.8 1 7 0.0022 1.7 8.6 1.1 10 37 188 226 181 228 0.85 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF419-207 - 497 4.9e-08 32.7 47.8 2 7 0.0054 4.2 7.3 5.2 1 38 236 283 236 312 0.74 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF419-207 - 497 4.9e-08 32.7 47.8 3 7 0.0024 1.9 8.5 2.2 9 38 299 339 292 343 0.77 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF419-207 - 497 4.9e-08 32.7 47.8 4 7 0.00017 0.13 12.2 5.2 2 36 348 393 348 397 0.88 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF419-207 - 497 4.9e-08 32.7 47.8 5 7 0.019 15 5.6 0.3 4 23 379 397 376 407 0.73 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF419-207 - 497 4.9e-08 32.7 47.8 6 7 0.00053 0.42 10.5 1.1 2 38 405 451 404 454 0.82 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF419-207 - 497 4.9e-08 32.7 47.8 7 7 0.05 39 4.2 1.1 2 23 461 481 460 492 0.74 Phorbol esters/diacylglycerol binding domain (C1 domain) # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF419-207.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF419-207.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF419-207.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF419-207.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF419-207.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:06:00 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- KRAB PF01352.27 42 ZNF419-208 - 110 4.8e-25 86.9 0.9 1 1 5.1e-29 9.1e-25 86.0 0.9 2 42 28 68 27 68 0.99 KRAB box # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF419-208.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF419-208.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF419-208.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF419-208.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF419-208.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:06:01 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF419-209.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF419-209.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF419-209.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF419-209.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF419-209.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:06:01 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- KRAB PF01352.27 42 ZNF419-210 - 97 3.8e-25 87.3 0.9 1 1 3.8e-29 6.8e-25 86.4 0.9 2 42 15 55 14 55 0.99 KRAB box # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF419-210.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF419-210.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF419-210.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF419-210.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF419-210.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:06:01 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF419-211.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF419-211.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF419-211.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF419-211.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF419-211.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:06:02 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF419-212.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF419-212.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF419-212.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF419-212.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF419-212.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:06:02 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZNF419-213 - 455 1.8e-78 255.7 95.3 1 13 0.39 3.1e+02 2.0 0.1 3 15 70 82 68 85 0.87 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF419-213 - 455 1.8e-78 255.7 95.3 2 13 0.00067 0.55 10.8 8.0 5 25 122 158 119 159 0.61 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF419-213 - 455 1.8e-78 255.7 95.3 3 13 1e-07 8.1e-05 22.9 0.5 2 24 163 185 163 186 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF419-213 - 455 1.8e-78 255.7 95.3 4 13 3.1e-08 2.5e-05 24.5 0.1 4 25 193 214 190 215 0.90 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF419-213 - 455 1.8e-78 255.7 95.3 5 13 2.9e-11 2.4e-08 34.0 2.3 1 26 218 243 218 243 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF419-213 - 455 1.8e-78 255.7 95.3 6 13 1e-08 8.3e-06 26.0 0.7 2 24 247 269 246 270 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF419-213 - 455 1.8e-78 255.7 95.3 7 13 3.8e-11 3.1e-08 33.7 2.3 1 26 274 299 274 299 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF419-213 - 455 1.8e-78 255.7 95.3 8 13 3e-10 2.5e-07 30.8 0.4 1 25 302 326 302 327 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF419-213 - 455 1.8e-78 255.7 95.3 9 13 5.7e-10 4.7e-07 30.0 1.1 1 24 330 353 330 354 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF419-213 - 455 1.8e-78 255.7 95.3 10 13 4.6e-11 3.7e-08 33.4 0.6 2 25 359 382 358 383 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF419-213 - 455 1.8e-78 255.7 95.3 11 13 4.3e-08 3.5e-05 24.0 0.7 2 24 387 409 386 410 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF419-213 - 455 1.8e-78 255.7 95.3 12 13 2.4e-10 2e-07 31.1 2.3 1 26 414 439 414 439 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF419-213 - 455 1.8e-78 255.7 95.3 13 13 0.03 25 5.5 0.2 2 12 443 453 442 455 0.87 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZNF419-213 - 455 4.3e-61 200.1 95.7 1 12 2.9 2.4e+03 -0.6 0.1 14 23 67 76 66 85 0.83 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF419-213 - 455 4.3e-61 200.1 95.7 2 12 1.2e-08 9.5e-06 25.8 0.4 1 23 148 170 148 170 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF419-213 - 455 4.3e-61 200.1 95.7 3 12 1.1e-06 0.00089 19.6 0.2 1 23 176 198 176 198 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF419-213 - 455 4.3e-61 200.1 95.7 4 12 3.8e-08 3.1e-05 24.2 1.0 3 23 206 226 204 226 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF419-213 - 455 4.3e-61 200.1 95.7 5 12 2.5e-07 0.0002 21.6 3.7 1 23 232 254 232 254 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF419-213 - 455 4.3e-61 200.1 95.7 6 12 5.1e-08 4.2e-05 23.8 1.0 1 23 260 282 260 282 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF419-213 - 455 4.3e-61 200.1 95.7 7 12 2.5e-08 2e-05 24.8 2.9 1 23 288 310 288 310 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF419-213 - 455 4.3e-61 200.1 95.7 8 12 3.7e-08 3e-05 24.2 4.1 1 23 316 338 316 338 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF419-213 - 455 4.3e-61 200.1 95.7 9 12 2.6e-08 2.1e-05 24.7 1.3 1 23 344 366 344 366 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF419-213 - 455 4.3e-61 200.1 95.7 10 12 9.4e-08 7.7e-05 22.9 1.6 1 23 372 394 372 394 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF419-213 - 455 4.3e-61 200.1 95.7 11 12 6.9e-08 5.6e-05 23.4 0.8 1 23 400 422 400 422 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF419-213 - 455 4.3e-61 200.1 95.7 12 12 1.9e-07 0.00016 22.0 4.6 1 23 428 450 428 450 0.98 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZNF419-213 - 455 2.5e-27 93.2 96.0 1 11 2.6e-05 0.021 15.6 0.4 1 23 148 170 148 171 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF419-213 - 455 2.5e-27 93.2 96.0 2 11 0.00025 0.2 12.6 0.2 1 23 176 198 176 199 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF419-213 - 455 2.5e-27 93.2 96.0 3 11 0.00011 0.086 13.7 0.8 2 23 205 226 204 227 0.91 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF419-213 - 455 2.5e-27 93.2 96.0 4 11 0.00051 0.41 11.6 2.9 1 23 232 254 232 255 0.91 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF419-213 - 455 2.5e-27 93.2 96.0 5 11 3.6e-05 0.029 15.2 0.9 1 23 260 282 260 283 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF419-213 - 455 2.5e-27 93.2 96.0 6 11 5.6e-05 0.045 14.6 2.7 1 23 288 310 288 311 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF419-213 - 455 2.5e-27 93.2 96.0 7 11 6e-05 0.049 14.5 3.7 1 23 316 338 316 339 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF419-213 - 455 2.5e-27 93.2 96.0 8 11 4e-05 0.033 15.0 1.1 1 23 344 366 344 367 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF419-213 - 455 2.5e-27 93.2 96.0 9 11 2.4e-05 0.019 15.7 1.0 1 23 372 394 372 395 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF419-213 - 455 2.5e-27 93.2 96.0 10 11 3e-05 0.025 15.4 0.8 1 23 400 422 400 423 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF419-213 - 455 2.5e-27 93.2 96.0 11 11 0.001 0.84 10.6 3.3 1 23 428 450 428 451 0.94 C2H2-type zinc finger zf-C2H2_8 PF15909.5 98 ZNF419-213 - 455 4.8e-11 42.8 50.0 1 6 0.00022 0.18 12.1 3.4 29 88 140 197 116 206 0.77 C2H2-type zinc ribbon zf-C2H2_8 PF15909.5 98 ZNF419-213 - 455 4.8e-11 42.8 50.0 2 6 0.001 0.85 10.0 2.1 38 88 206 253 197 257 0.85 C2H2-type zinc ribbon zf-C2H2_8 PF15909.5 98 ZNF419-213 - 455 4.8e-11 42.8 50.0 3 6 0.00064 0.53 10.6 2.6 37 89 261 310 252 315 0.78 C2H2-type zinc ribbon zf-C2H2_8 PF15909.5 98 ZNF419-213 - 455 4.8e-11 42.8 50.0 4 6 2.8e-05 0.022 15.0 3.0 36 89 316 366 310 372 0.86 C2H2-type zinc ribbon zf-C2H2_8 PF15909.5 98 ZNF419-213 - 455 4.8e-11 42.8 50.0 5 6 1.9e-06 0.0015 18.8 1.2 41 89 375 422 366 427 0.86 C2H2-type zinc ribbon zf-C2H2_8 PF15909.5 98 ZNF419-213 - 455 4.8e-11 42.8 50.0 6 6 0.042 34 4.8 1.8 66 88 427 449 422 455 0.84 C2H2-type zinc ribbon zf-C2H2_6 PF13912.6 27 ZNF419-213 - 455 1.6e-10 40.7 83.8 1 11 0.00025 0.2 11.7 0.4 1 12 147 158 147 163 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF419-213 - 455 1.6e-10 40.7 83.8 2 11 0.00011 0.09 12.8 0.2 2 12 176 186 175 198 0.81 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF419-213 - 455 1.6e-10 40.7 83.8 3 11 0.0028 2.3 8.3 1.0 2 22 204 224 204 228 0.83 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF419-213 - 455 1.6e-10 40.7 83.8 4 11 0.0054 4.4 7.4 1.0 2 12 232 242 232 243 0.91 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF419-213 - 455 1.6e-10 40.7 83.8 5 11 5.4e-05 0.044 13.8 1.1 2 24 260 282 260 285 0.89 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF419-213 - 455 1.6e-10 40.7 83.8 6 11 0.014 11 6.1 2.0 2 20 288 306 288 311 0.80 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF419-213 - 455 1.6e-10 40.7 83.8 7 11 0.097 79 3.4 4.2 2 24 316 338 316 341 0.92 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF419-213 - 455 1.6e-10 40.7 83.8 8 11 0.099 80 3.4 1.3 2 11 344 353 344 354 0.87 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF419-213 - 455 1.6e-10 40.7 83.8 9 11 0.007 5.7 7.1 1.2 2 24 372 394 372 395 0.90 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF419-213 - 455 1.6e-10 40.7 83.8 10 11 0.0028 2.3 8.3 0.7 2 20 400 418 400 423 0.79 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF419-213 - 455 1.6e-10 40.7 83.8 11 11 0.0021 1.7 8.8 2.6 2 24 428 450 428 453 0.93 C2H2-type zinc finger zinc_ribbon_15 PF17032.5 86 ZNF419-213 - 455 2.1e-10 41.2 35.9 1 8 0.0008 0.66 10.8 1.4 34 75 144 185 139 190 0.87 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF419-213 - 455 2.1e-10 41.2 35.9 2 8 0.00038 0.31 11.8 0.5 28 78 196 244 185 247 0.77 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF419-213 - 455 2.1e-10 41.2 35.9 3 8 0.001 0.84 10.4 3.5 26 77 220 271 206 275 0.85 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF419-213 - 455 2.1e-10 41.2 35.9 4 8 0.001 0.84 10.4 0.9 31 78 253 300 245 303 0.82 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF419-213 - 455 2.1e-10 41.2 35.9 5 8 0.0011 0.88 10.4 1.8 32 75 282 325 275 330 0.86 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF419-213 - 455 2.1e-10 41.2 35.9 6 8 0.00024 0.19 12.5 1.5 26 78 304 356 299 359 0.90 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF419-213 - 455 2.1e-10 41.2 35.9 7 8 0.00026 0.21 12.3 0.9 30 78 336 384 330 387 0.87 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF419-213 - 455 2.1e-10 41.2 35.9 8 8 0.00015 0.12 13.1 0.8 33 78 395 440 386 444 0.86 zinc-ribbon family zf_UBZ PF18439.1 32 ZNF419-213 - 455 3.1e-10 39.5 46.9 1 11 0.0045 3.6 7.2 0.1 2 12 147 157 146 167 0.83 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF419-213 - 455 3.1e-10 39.5 46.9 2 11 0.0046 3.7 7.2 0.3 2 12 175 185 174 187 0.87 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF419-213 - 455 3.1e-10 39.5 46.9 3 11 0.0025 2.1 8.0 0.1 3 21 204 223 203 223 0.90 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF419-213 - 455 3.1e-10 39.5 46.9 4 11 0.003 2.4 7.8 0.2 3 15 232 244 230 251 0.77 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF419-213 - 455 3.1e-10 39.5 46.9 5 11 0.0023 1.9 8.2 0.1 3 20 260 278 258 279 0.83 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF419-213 - 455 3.1e-10 39.5 46.9 6 11 0.011 8.7 6.0 0.2 3 13 288 298 286 306 0.84 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF419-213 - 455 3.1e-10 39.5 46.9 7 11 0.008 6.5 6.4 0.7 3 20 316 334 314 335 0.77 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF419-213 - 455 3.1e-10 39.5 46.9 8 11 0.1 85 2.9 0.1 3 15 344 356 342 363 0.80 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF419-213 - 455 3.1e-10 39.5 46.9 9 11 0.0033 2.7 7.7 0.2 3 20 372 390 370 391 0.88 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF419-213 - 455 3.1e-10 39.5 46.9 10 11 0.094 76 3.0 0.1 3 16 400 414 398 419 0.77 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF419-213 - 455 3.1e-10 39.5 46.9 11 11 0.062 50 3.6 0.1 3 13 428 438 426 443 0.83 Ubiquitin-Binding Zinc Finger Zn-ribbon_8 PF09723.10 40 ZNF419-213 - 455 2.3e-09 37.2 60.0 1 10 5.4 4.4e+03 -2.1 0.1 31 39 76 85 75 85 0.83 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF419-213 - 455 2.3e-09 37.2 60.0 2 10 0.00025 0.2 11.8 3.9 6 34 148 183 147 188 0.89 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF419-213 - 455 2.3e-09 37.2 60.0 3 10 0.0084 6.9 6.9 0.5 6 19 176 189 175 195 0.84 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF419-213 - 455 2.3e-09 37.2 60.0 4 10 6.6e-05 0.054 13.6 1.6 6 36 204 241 203 244 0.88 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF419-213 - 455 2.3e-09 37.2 60.0 5 10 3.4e-05 0.028 14.5 2.2 6 34 260 295 259 300 0.92 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF419-213 - 455 2.3e-09 37.2 60.0 6 10 0.0051 4.2 7.6 7.6 6 34 316 351 315 355 0.88 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF419-213 - 455 2.3e-09 37.2 60.0 7 10 0.0049 4 7.6 6.3 6 34 344 379 343 383 0.90 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF419-213 - 455 2.3e-09 37.2 60.0 8 10 0.0056 4.5 7.5 5.6 6 34 372 407 371 411 0.79 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF419-213 - 455 2.3e-09 37.2 60.0 9 10 0.00032 0.26 11.4 3.3 6 34 400 435 399 439 0.93 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF419-213 - 455 2.3e-09 37.2 60.0 10 10 0.027 22 5.3 0.8 6 16 428 438 427 444 0.82 Zinc ribbon domain C1_1 PF00130.22 53 ZNF419-213 - 455 3.4e-08 33.3 48.5 1 7 0.0022 1.8 8.5 1.3 11 37 147 184 140 186 0.85 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF419-213 - 455 3.4e-08 33.3 48.5 2 7 0.0055 4.5 7.3 5.5 1 38 194 241 194 270 0.74 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF419-213 - 455 3.4e-08 33.3 48.5 3 7 0.0023 1.9 8.5 2.5 9 38 257 297 249 301 0.77 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF419-213 - 455 3.4e-08 33.3 48.5 4 7 0.00015 0.13 12.2 5.3 2 36 306 351 306 355 0.88 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF419-213 - 455 3.4e-08 33.3 48.5 5 7 0.017 14 5.7 0.5 4 23 337 355 334 366 0.71 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF419-213 - 455 3.4e-08 33.3 48.5 6 7 0.00044 0.36 10.8 1.1 2 38 363 409 362 412 0.83 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF419-213 - 455 3.4e-08 33.3 48.5 7 7 0.043 35 4.4 1.1 2 23 419 439 418 450 0.74 Phorbol esters/diacylglycerol binding domain (C1 domain) # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF419-213.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF419-213.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF419-213.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF419-213.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF419-213.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:06:03 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF419-214.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF419-214.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF419-214.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF419-214.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF419-214.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:06:03 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF419-215.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF419-215.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF419-215.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF419-215.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF419-215.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:06:03 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZNF419-216 - 424 4e-79 257.8 94.8 1 13 0.4 2.9e+02 2.2 0.1 3 15 39 51 37 54 0.87 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF419-216 - 424 4e-79 257.8 94.8 2 13 0.00075 0.54 10.8 8.1 5 25 91 127 88 128 0.61 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF419-216 - 424 4e-79 257.8 94.8 3 13 1e-07 7.5e-05 23.0 0.5 2 24 132 154 132 155 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF419-216 - 424 4e-79 257.8 94.8 4 13 3.3e-08 2.3e-05 24.6 0.1 4 25 162 183 159 184 0.90 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF419-216 - 424 4e-79 257.8 94.8 5 13 3e-11 2.2e-08 34.2 2.3 1 26 187 212 187 212 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF419-216 - 424 4e-79 257.8 94.8 6 13 1.1e-08 7.6e-06 26.1 0.7 2 24 216 238 215 239 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF419-216 - 424 4e-79 257.8 94.8 7 13 3.9e-11 2.8e-08 33.8 2.3 1 26 243 268 243 268 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF419-216 - 424 4e-79 257.8 94.8 8 13 3.2e-10 2.3e-07 30.9 0.4 1 25 271 295 271 296 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF419-216 - 424 4e-79 257.8 94.8 9 13 6e-10 4.3e-07 30.1 1.1 1 24 299 322 299 323 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF419-216 - 424 4e-79 257.8 94.8 10 13 4.7e-11 3.4e-08 33.5 0.6 2 25 328 351 327 352 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF419-216 - 424 4e-79 257.8 94.8 11 13 4.5e-08 3.2e-05 24.1 0.7 2 24 356 378 355 379 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF419-216 - 424 4e-79 257.8 94.8 12 13 2.5e-10 1.8e-07 31.2 2.3 1 26 383 408 383 408 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF419-216 - 424 4e-79 257.8 94.8 13 13 0.032 23 5.7 0.2 2 12 412 422 411 424 0.87 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZNF419-216 - 424 1.4e-61 201.6 95.5 1 12 2.8 2e+03 -0.4 0.1 14 23 36 45 35 55 0.79 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF419-216 - 424 1.4e-61 201.6 95.5 2 12 1.2e-08 8.7e-06 25.9 0.4 1 23 117 139 117 139 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF419-216 - 424 1.4e-61 201.6 95.5 3 12 1.1e-06 0.00081 19.7 0.2 1 23 145 167 145 167 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF419-216 - 424 1.4e-61 201.6 95.5 4 12 3.9e-08 2.8e-05 24.3 1.0 3 23 175 195 173 195 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF419-216 - 424 1.4e-61 201.6 95.5 5 12 2.6e-07 0.00019 21.7 3.7 1 23 201 223 201 223 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF419-216 - 424 1.4e-61 201.6 95.5 6 12 5.3e-08 3.8e-05 23.9 1.0 1 23 229 251 229 251 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF419-216 - 424 1.4e-61 201.6 95.5 7 12 2.6e-08 1.9e-05 24.9 2.9 1 23 257 279 257 279 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF419-216 - 424 1.4e-61 201.6 95.5 8 12 3.9e-08 2.8e-05 24.3 4.1 1 23 285 307 285 307 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF419-216 - 424 1.4e-61 201.6 95.5 9 12 2.7e-08 1.9e-05 24.8 1.3 1 23 313 335 313 335 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF419-216 - 424 1.4e-61 201.6 95.5 10 12 9.8e-08 7e-05 23.1 1.6 1 23 341 363 341 363 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF419-216 - 424 1.4e-61 201.6 95.5 11 12 7.2e-08 5.2e-05 23.5 0.8 1 23 369 391 369 391 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF419-216 - 424 1.4e-61 201.6 95.5 12 12 2e-07 0.00014 22.1 4.6 1 23 397 419 397 419 0.98 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZNF419-216 - 424 9.5e-28 94.5 96.0 1 11 2.7e-05 0.019 15.7 0.4 1 23 117 139 117 140 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF419-216 - 424 9.5e-28 94.5 96.0 2 11 0.00026 0.19 12.7 0.2 1 23 145 167 145 168 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF419-216 - 424 9.5e-28 94.5 96.0 3 11 0.00011 0.079 13.8 0.8 2 23 174 195 173 196 0.91 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF419-216 - 424 9.5e-28 94.5 96.0 4 11 0.00053 0.38 11.7 2.9 1 23 201 223 201 224 0.91 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF419-216 - 424 9.5e-28 94.5 96.0 5 11 3.8e-05 0.027 15.3 0.9 1 23 229 251 229 252 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF419-216 - 424 9.5e-28 94.5 96.0 6 11 5.8e-05 0.042 14.7 2.7 1 23 257 279 257 280 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF419-216 - 424 9.5e-28 94.5 96.0 7 11 6.2e-05 0.045 14.6 3.7 1 23 285 307 285 308 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF419-216 - 424 9.5e-28 94.5 96.0 8 11 4.2e-05 0.03 15.1 1.1 1 23 313 335 313 336 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF419-216 - 424 9.5e-28 94.5 96.0 9 11 2.5e-05 0.018 15.9 1.0 1 23 341 363 341 364 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF419-216 - 424 9.5e-28 94.5 96.0 10 11 3.2e-05 0.023 15.5 0.8 1 23 369 391 369 392 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF419-216 - 424 9.5e-28 94.5 96.0 11 11 0.0011 0.77 10.8 3.3 1 23 397 419 397 420 0.94 C2H2-type zinc finger zf-C2H2_8 PF15909.5 98 ZNF419-216 - 424 2.8e-11 43.5 50.1 1 6 0.00016 0.12 12.7 2.9 29 88 109 166 85 172 0.76 C2H2-type zinc ribbon zf-C2H2_8 PF15909.5 98 ZNF419-216 - 424 2.8e-11 43.5 50.1 2 6 0.0011 0.79 10.1 2.1 38 88 175 222 166 226 0.85 C2H2-type zinc ribbon zf-C2H2_8 PF15909.5 98 ZNF419-216 - 424 2.8e-11 43.5 50.1 3 6 0.00065 0.46 10.8 2.6 37 89 230 279 221 284 0.78 C2H2-type zinc ribbon zf-C2H2_8 PF15909.5 98 ZNF419-216 - 424 2.8e-11 43.5 50.1 4 6 2.9e-05 0.021 15.1 3.1 36 89 285 335 279 341 0.86 C2H2-type zinc ribbon zf-C2H2_8 PF15909.5 98 ZNF419-216 - 424 2.8e-11 43.5 50.1 5 6 2.3e-06 0.0017 18.6 1.4 41 89 344 391 335 395 0.86 C2H2-type zinc ribbon zf-C2H2_8 PF15909.5 98 ZNF419-216 - 424 2.8e-11 43.5 50.1 6 6 0.045 32 4.9 1.9 66 88 396 418 391 424 0.84 C2H2-type zinc ribbon zinc_ribbon_15 PF17032.5 86 ZNF419-216 - 424 1.1e-10 42.1 35.8 1 7 0.00067 0.48 11.2 1.2 34 75 113 154 108 160 0.87 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF419-216 - 424 1.1e-10 42.1 35.8 2 7 0.00038 0.27 12.0 0.5 28 78 165 213 154 216 0.77 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF419-216 - 424 1.1e-10 42.1 35.8 3 7 0.0013 0.96 10.2 3.9 26 78 189 241 175 247 0.85 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF419-216 - 424 1.1e-10 42.1 35.8 4 7 0.0014 1 10.1 1.2 32 78 223 269 215 271 0.82 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF419-216 - 424 1.1e-10 42.1 35.8 5 7 0.0011 0.82 10.5 1.9 32 75 251 294 243 299 0.86 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF419-216 - 424 1.1e-10 42.1 35.8 6 7 0.001 0.74 10.6 4.5 29 78 276 325 271 359 0.55 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF419-216 - 424 1.1e-10 42.1 35.8 7 7 0.00015 0.11 13.3 0.8 33 78 364 409 355 413 0.86 zinc-ribbon family zf_UBZ PF18439.1 32 ZNF419-216 - 424 1.3e-10 40.7 46.9 1 11 0.0047 3.4 7.4 0.1 2 12 116 126 115 136 0.83 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF419-216 - 424 1.3e-10 40.7 46.9 2 11 0.0048 3.5 7.3 0.3 2 12 144 154 143 156 0.87 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF419-216 - 424 1.3e-10 40.7 46.9 3 11 0.0027 1.9 8.1 0.1 3 21 173 192 172 192 0.90 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF419-216 - 424 1.3e-10 40.7 46.9 4 11 0.0031 2.2 7.9 0.2 3 15 201 213 199 220 0.77 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF419-216 - 424 1.3e-10 40.7 46.9 5 11 0.0024 1.7 8.3 0.1 3 20 229 247 227 248 0.83 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF419-216 - 424 1.3e-10 40.7 46.9 6 11 0.011 8.1 6.1 0.2 3 13 257 267 255 275 0.84 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF419-216 - 424 1.3e-10 40.7 46.9 7 11 0.0083 6 6.6 0.7 3 20 285 303 283 304 0.77 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF419-216 - 424 1.3e-10 40.7 46.9 8 11 0.11 78 3.0 0.1 3 15 313 325 311 332 0.80 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF419-216 - 424 1.3e-10 40.7 46.9 9 11 0.0035 2.5 7.8 0.2 3 20 341 359 339 360 0.88 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF419-216 - 424 1.3e-10 40.7 46.9 10 11 0.098 70 3.1 0.1 3 16 369 383 367 388 0.77 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF419-216 - 424 1.3e-10 40.7 46.9 11 11 0.065 46 3.7 0.1 3 13 397 407 395 412 0.83 Ubiquitin-Binding Zinc Finger Zn-ribbon_8 PF09723.10 40 ZNF419-216 - 424 1.5e-09 37.8 60.4 1 10 5.6 4e+03 -2.0 0.1 31 39 45 54 44 54 0.83 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF419-216 - 424 1.5e-09 37.8 60.4 2 10 0.00028 0.2 11.8 4.0 6 34 117 152 116 157 0.89 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF419-216 - 424 1.5e-09 37.8 60.4 3 10 0.0088 6.3 7.0 0.5 6 19 145 158 144 164 0.84 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF419-216 - 424 1.5e-09 37.8 60.4 4 10 6.8e-05 0.049 13.8 1.6 6 36 173 210 172 213 0.88 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF419-216 - 424 1.5e-09 37.8 60.4 5 10 3.6e-05 0.026 14.7 2.2 6 34 229 264 228 269 0.92 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF419-216 - 424 1.5e-09 37.8 60.4 6 10 0.0049 3.5 7.8 7.5 6 34 285 320 284 324 0.88 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF419-216 - 424 1.5e-09 37.8 60.4 7 10 0.0057 4.1 7.6 6.4 6 34 313 348 312 352 0.90 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF419-216 - 424 1.5e-09 37.8 60.4 8 10 0.0036 2.6 8.2 4.8 6 34 341 376 340 379 0.79 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF419-216 - 424 1.5e-09 37.8 60.4 9 10 0.00038 0.27 11.4 3.5 6 34 369 404 368 408 0.93 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF419-216 - 424 1.5e-09 37.8 60.4 10 10 0.029 21 5.3 0.9 6 16 397 407 396 413 0.82 Zinc ribbon domain zf-C2H2_6 PF13912.6 27 ZNF419-216 - 424 4e-09 36.3 89.5 1 11 0.00026 0.19 11.8 0.4 1 12 116 127 116 132 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF419-216 - 424 4e-09 36.3 89.5 2 11 0.00012 0.083 12.9 0.2 2 12 145 155 144 167 0.81 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF419-216 - 424 4e-09 36.3 89.5 3 11 0.0029 2.1 8.4 1.0 2 22 173 193 173 197 0.83 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF419-216 - 424 4e-09 36.3 89.5 4 11 0.0057 4.1 7.5 1.0 2 12 201 211 201 212 0.91 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF419-216 - 424 4e-09 36.3 89.5 5 11 5.6e-05 0.04 13.9 1.1 2 24 229 251 229 254 0.89 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF419-216 - 424 4e-09 36.3 89.5 6 11 0.015 11 6.2 2.0 2 20 257 275 257 280 0.80 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF419-216 - 424 4e-09 36.3 89.5 7 11 0.1 73 3.5 4.2 2 24 285 307 285 310 0.92 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF419-216 - 424 4e-09 36.3 89.5 8 11 0.1 74 3.5 1.3 2 11 313 322 313 323 0.87 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF419-216 - 424 4e-09 36.3 89.5 9 11 0.0073 5.2 7.2 1.2 2 24 341 363 341 364 0.90 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF419-216 - 424 4e-09 36.3 89.5 10 11 0.003 2.1 8.4 0.7 2 20 369 387 369 392 0.79 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF419-216 - 424 4e-09 36.3 89.5 11 11 0.0022 1.5 8.9 2.6 2 24 397 419 397 422 0.93 C2H2-type zinc finger C1_1 PF00130.22 53 ZNF419-216 - 424 2.7e-08 33.6 49.2 1 8 0.0023 1.6 8.6 1.3 10 37 115 153 109 155 0.85 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF419-216 - 424 2.7e-08 33.6 49.2 2 8 0.00051 0.36 10.7 1.6 1 37 163 209 163 214 0.87 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF419-216 - 424 2.7e-08 33.6 49.2 3 8 0.012 8.8 6.3 4.0 2 36 192 236 187 238 0.75 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF419-216 - 424 2.7e-08 33.6 49.2 4 8 0.0034 2.4 8.1 3.0 9 38 226 266 218 270 0.77 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF419-216 - 424 2.7e-08 33.6 49.2 5 8 0.00014 0.099 12.5 5.1 2 36 275 320 275 324 0.88 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF419-216 - 424 2.7e-08 33.6 49.2 6 8 0.017 12 5.9 0.4 4 23 306 324 303 335 0.71 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF419-216 - 424 2.7e-08 33.6 49.2 7 8 0.00047 0.34 10.8 1.1 2 38 332 378 331 381 0.83 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF419-216 - 424 2.7e-08 33.6 49.2 8 8 0.045 33 4.5 1.1 2 23 388 408 387 419 0.74 Phorbol esters/diacylglycerol binding domain (C1 domain) FAM178 PF14816.6 373 ZNF419-216 - 424 8.9e-07 28.2 13.8 1 8 0.0062 4.5 6.2 0.6 58 130 20 91 16 101 0.86 Family of unknown function, FAM178 FAM178 PF14816.6 373 ZNF419-216 - 424 8.9e-07 28.2 13.8 2 8 0.11 78 2.1 0.0 67 102 125 158 92 172 0.74 Family of unknown function, FAM178 FAM178 PF14816.6 373 ZNF419-216 - 424 8.9e-07 28.2 13.8 3 8 0.0053 3.8 6.4 0.1 78 106 190 218 177 238 0.75 Family of unknown function, FAM178 FAM178 PF14816.6 373 ZNF419-216 - 424 8.9e-07 28.2 13.8 4 8 0.078 56 2.5 0.0 72 103 240 271 233 287 0.83 Family of unknown function, FAM178 FAM178 PF14816.6 373 ZNF419-216 - 424 8.9e-07 28.2 13.8 5 8 0.51 3.6e+02 -0.1 0.0 81 102 277 298 267 302 0.84 Family of unknown function, FAM178 FAM178 PF14816.6 373 ZNF419-216 - 424 8.9e-07 28.2 13.8 6 8 0.0078 5.6 5.8 0.1 74 104 298 328 291 342 0.78 Family of unknown function, FAM178 FAM178 PF14816.6 373 ZNF419-216 - 424 8.9e-07 28.2 13.8 7 8 0.0012 0.87 8.5 0.1 73 104 353 384 338 398 0.80 Family of unknown function, FAM178 FAM178 PF14816.6 373 ZNF419-216 - 424 8.9e-07 28.2 13.8 8 8 0.8 5.7e+02 -0.8 0.0 79 103 387 411 381 419 0.81 Family of unknown function, FAM178 # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF419-216.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF419-216.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF419-216.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF419-216.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF419-216.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:06:04 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF419-217.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF419-217.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF419-217.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF419-217.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF419-217.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:06:04 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-C2H2_4 PF13894.6 24 ZNF423-201 - 1284 2e-70 227.3 218.6 1 31 0.00022 0.3 12.0 0.5 1 20 67 86 67 89 0.90 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF423-201 - 1284 2e-70 227.3 218.6 2 31 5.9e-05 0.082 13.8 1.0 1 23 138 160 138 161 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF423-201 - 1284 2e-70 227.3 218.6 3 31 0.003 4.2 8.5 4.5 1 23 166 188 166 189 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF423-201 - 1284 2e-70 227.3 218.6 4 31 0.00014 0.19 12.7 4.6 1 23 194 216 194 217 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF423-201 - 1284 2e-70 227.3 218.6 5 31 2.8e-07 0.00039 21.0 1.7 1 23 222 244 222 245 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF423-201 - 1284 2e-70 227.3 218.6 6 31 1.6e-05 0.022 15.6 0.4 1 24 263 286 263 286 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF423-201 - 1284 2e-70 227.3 218.6 7 31 0.00016 0.23 12.4 0.4 2 24 296 318 295 318 0.91 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF423-201 - 1284 2e-70 227.3 218.6 8 31 0.00038 0.53 11.3 2.4 1 23 323 345 323 346 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF423-201 - 1284 2e-70 227.3 218.6 9 31 0.00044 0.61 11.1 0.2 1 24 409 433 409 433 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF423-201 - 1284 2e-70 227.3 218.6 10 31 0.0046 6.4 7.9 0.6 1 24 441 464 441 464 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF423-201 - 1284 2e-70 227.3 218.6 11 31 3.6e-05 0.05 14.5 0.5 1 24 480 503 480 503 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF423-201 - 1284 2e-70 227.3 218.6 12 31 0.0011 1.5 9.9 0.4 1 24 517 540 517 540 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF423-201 - 1284 2e-70 227.3 218.6 13 31 0.0065 8.9 7.4 0.2 1 23 563 587 563 588 0.91 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF423-201 - 1284 2e-70 227.3 218.6 14 31 6.8e-05 0.094 13.6 1.1 1 23 632 654 632 655 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF423-201 - 1284 2e-70 227.3 218.6 15 31 1.9e-05 0.026 15.3 0.2 3 23 664 684 663 685 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF423-201 - 1284 2e-70 227.3 218.6 16 31 2.3e-06 0.0031 18.2 0.3 1 24 692 715 692 715 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF423-201 - 1284 2e-70 227.3 218.6 17 31 7.7e-05 0.11 13.4 0.8 1 24 720 743 720 743 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF423-201 - 1284 2e-70 227.3 218.6 18 31 0.00038 0.52 11.3 1.0 1 24 750 773 750 773 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF423-201 - 1284 2e-70 227.3 218.6 19 31 3.8e-05 0.052 14.4 2.6 1 23 781 803 781 804 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF423-201 - 1284 2e-70 227.3 218.6 20 31 0.0039 5.4 8.1 1.6 1 24 807 830 807 830 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF423-201 - 1284 2e-70 227.3 218.6 21 31 0.003 4.1 8.5 0.0 2 24 887 909 886 909 0.89 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF423-201 - 1284 2e-70 227.3 218.6 22 31 4.4e-06 0.0061 17.3 2.1 1 23 930 952 930 953 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF423-201 - 1284 2e-70 227.3 218.6 23 31 1.1e-05 0.016 16.0 0.2 1 23 959 981 959 982 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF423-201 - 1284 2e-70 227.3 218.6 24 31 0.039 53 5.0 0.8 2 23 989 1010 989 1011 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF423-201 - 1284 2e-70 227.3 218.6 25 31 0.55 7.6e+02 1.4 0.2 1 19 1020 1038 1020 1042 0.90 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF423-201 - 1284 2e-70 227.3 218.6 26 31 0.02 28 5.9 0.2 1 17 1064 1080 1064 1081 0.91 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF423-201 - 1284 2e-70 227.3 218.6 27 31 6.9e-05 0.095 13.6 0.1 2 24 1121 1143 1120 1143 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF423-201 - 1284 2e-70 227.3 218.6 28 31 0.0011 1.5 9.9 0.1 1 23 1168 1190 1168 1191 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF423-201 - 1284 2e-70 227.3 218.6 29 31 0.00015 0.21 12.5 2.2 1 23 1198 1220 1198 1221 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF423-201 - 1284 2e-70 227.3 218.6 30 31 5.4e-06 0.0075 17.0 0.4 1 24 1229 1252 1229 1252 0.98 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF423-201 - 1284 2e-70 227.3 218.6 31 31 0.0032 4.4 8.4 1.2 3 24 1261 1282 1259 1282 0.92 C2H2-type zinc finger zf-C2H2 PF00096.26 23 ZNF423-201 - 1284 3.2e-57 187.9 215.7 1 31 0.00055 0.75 10.4 0.6 1 20 67 86 67 88 0.95 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF423-201 - 1284 3.2e-57 187.9 215.7 2 31 3.4e-07 0.00047 20.5 1.2 1 23 138 160 138 160 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF423-201 - 1284 3.2e-57 187.9 215.7 3 31 0.0017 2.3 8.8 6.5 1 23 166 188 166 188 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF423-201 - 1284 3.2e-57 187.9 215.7 4 31 3e-06 0.0041 17.5 5.0 1 23 194 216 194 216 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF423-201 - 1284 3.2e-57 187.9 215.7 5 31 2.3e-07 0.00032 21.0 1.4 1 23 222 244 222 244 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF423-201 - 1284 3.2e-57 187.9 215.7 6 31 4.6e-05 0.064 13.7 0.4 1 23 263 286 263 286 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF423-201 - 1284 3.2e-57 187.9 215.7 7 31 0.0095 13 6.5 0.3 2 23 296 318 295 318 0.90 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF423-201 - 1284 3.2e-57 187.9 215.7 8 31 0.095 1.3e+02 3.3 1.2 1 12 323 334 323 345 0.85 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF423-201 - 1284 3.2e-57 187.9 215.7 9 31 0.00022 0.31 11.6 0.2 1 23 409 433 409 433 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF423-201 - 1284 3.2e-57 187.9 215.7 10 31 0.02 28 5.4 0.9 1 23 441 464 441 464 0.95 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF423-201 - 1284 3.2e-57 187.9 215.7 11 31 6.9e-06 0.0096 16.3 0.5 1 23 480 503 480 503 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF423-201 - 1284 3.2e-57 187.9 215.7 12 31 0.0013 1.8 9.2 0.3 1 23 517 540 517 540 0.95 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF423-201 - 1284 3.2e-57 187.9 215.7 13 31 0.0037 5.1 7.7 0.3 1 23 563 588 563 588 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF423-201 - 1284 3.2e-57 187.9 215.7 14 31 2.5e-05 0.035 14.6 1.5 1 23 632 654 632 654 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF423-201 - 1284 3.2e-57 187.9 215.7 15 31 0.00026 0.36 11.4 0.1 3 23 664 684 663 684 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF423-201 - 1284 3.2e-57 187.9 215.7 16 31 7e-06 0.0097 16.3 0.3 1 23 692 715 692 715 0.94 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF423-201 - 1284 3.2e-57 187.9 215.7 17 31 0.00088 1.2 9.7 0.5 1 23 720 743 720 743 0.95 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF423-201 - 1284 3.2e-57 187.9 215.7 18 31 0.00014 0.2 12.2 0.8 1 23 750 773 750 773 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF423-201 - 1284 3.2e-57 187.9 215.7 19 31 0.019 27 5.5 2.4 1 23 781 803 781 803 0.92 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF423-201 - 1284 3.2e-57 187.9 215.7 20 31 0.00018 0.24 11.9 1.4 1 23 807 830 807 830 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF423-201 - 1284 3.2e-57 187.9 215.7 21 31 0.0028 3.9 8.1 0.0 3 23 888 909 886 909 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF423-201 - 1284 3.2e-57 187.9 215.7 22 31 4.9e-05 0.068 13.7 2.4 1 23 930 952 930 952 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF423-201 - 1284 3.2e-57 187.9 215.7 23 31 5.4e-05 0.075 13.5 0.1 1 23 959 981 959 981 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF423-201 - 1284 3.2e-57 187.9 215.7 24 31 1.1 1.5e+03 -0.0 0.9 2 23 989 1010 989 1010 0.86 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF423-201 - 1284 3.2e-57 187.9 215.7 25 31 1.4 1.9e+03 -0.4 0.3 1 19 1020 1038 1020 1042 0.86 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF423-201 - 1284 3.2e-57 187.9 215.7 26 31 0.016 22 5.8 0.3 1 18 1064 1081 1064 1081 0.94 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF423-201 - 1284 3.2e-57 187.9 215.7 27 31 3.6e-06 0.0049 17.3 0.1 2 23 1121 1143 1120 1143 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF423-201 - 1284 3.2e-57 187.9 215.7 28 31 0.059 81 4.0 0.1 1 23 1168 1190 1168 1190 0.94 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF423-201 - 1284 3.2e-57 187.9 215.7 29 31 0.022 30 5.3 1.7 1 23 1198 1220 1198 1220 0.90 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF423-201 - 1284 3.2e-57 187.9 215.7 30 31 6.4e-05 0.088 13.3 0.2 1 23 1229 1252 1229 1252 0.93 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF423-201 - 1284 3.2e-57 187.9 215.7 31 31 0.00047 0.65 10.6 1.5 1 23 1259 1282 1259 1282 0.96 Zinc finger, C2H2 type zf-H2C2_2 PF13465.6 26 ZNF423-201 - 1284 4.2e-24 83.9 189.6 1 30 0.098 1.3e+02 3.2 0.1 12 24 64 76 61 78 0.85 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF423-201 - 1284 4.2e-24 83.9 189.6 2 30 0.0017 2.3 8.8 0.1 14 24 137 147 130 149 0.90 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF423-201 - 1284 4.2e-24 83.9 189.6 3 30 3.7e-05 0.052 14.0 4.2 2 26 153 177 152 177 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF423-201 - 1284 4.2e-24 83.9 189.6 4 30 2.1e-07 0.00029 21.1 2.9 4 25 183 204 180 205 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF423-201 - 1284 4.2e-24 83.9 189.6 5 30 3.1e-06 0.0043 17.4 3.3 1 25 208 232 208 233 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF423-201 - 1284 4.2e-24 83.9 189.6 6 30 0.0021 3 8.5 0.7 2 25 237 273 236 274 0.62 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF423-201 - 1284 4.2e-24 83.9 189.6 7 30 0.0067 9.2 6.9 0.1 2 25 278 305 277 306 0.83 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF423-201 - 1284 4.2e-24 83.9 189.6 8 30 0.036 50 4.6 0.6 5 25 313 333 310 334 0.75 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF423-201 - 1284 4.2e-24 83.9 189.6 9 30 0.13 1.8e+02 2.8 0.3 15 22 409 416 403 417 0.86 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF423-201 - 1284 4.2e-24 83.9 189.6 10 30 0.49 6.8e+02 1.0 0.2 4 22 427 448 425 449 0.67 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF423-201 - 1284 4.2e-24 83.9 189.6 11 30 0.0056 7.7 7.1 0.6 1 25 455 490 455 491 0.72 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF423-201 - 1284 4.2e-24 83.9 189.6 12 30 0.041 57 4.4 0.1 1 25 494 527 494 528 0.75 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF423-201 - 1284 4.2e-24 83.9 189.6 13 30 0.92 1.3e+03 0.1 0.2 15 21 563 569 555 571 0.80 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF423-201 - 1284 4.2e-24 83.9 189.6 14 30 1.2 1.6e+03 -0.2 0.4 2 10 580 589 579 598 0.86 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF423-201 - 1284 4.2e-24 83.9 189.6 15 30 0.38 5.3e+02 1.3 0.1 14 26 631 643 625 643 0.87 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF423-201 - 1284 4.2e-24 83.9 189.6 16 30 0.44 6.1e+02 1.1 0.1 16 25 663 672 646 673 0.63 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF423-201 - 1284 4.2e-24 83.9 189.6 17 30 0.0013 1.8 9.1 0.5 2 26 677 703 676 703 0.81 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF423-201 - 1284 4.2e-24 83.9 189.6 18 30 0.013 18 6.0 0.3 1 25 706 730 706 731 0.82 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF423-201 - 1284 4.2e-24 83.9 189.6 19 30 0.00096 1.3 9.5 0.1 5 21 738 756 735 760 0.86 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF423-201 - 1284 4.2e-24 83.9 189.6 20 30 0.0003 0.41 11.2 0.8 1 26 764 792 764 792 0.78 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF423-201 - 1284 4.2e-24 83.9 189.6 21 30 0.013 19 5.9 6.3 5 24 799 816 795 817 0.84 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF423-201 - 1284 4.2e-24 83.9 189.6 22 30 6.6 9.1e+03 -2.6 0.8 2 9 822 830 822 830 0.79 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF423-201 - 1284 4.2e-24 83.9 189.6 23 30 0.08 1.1e+02 3.5 0.1 14 24 929 939 901 941 0.62 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF423-201 - 1284 4.2e-24 83.9 189.6 24 30 1e-05 0.014 15.8 0.5 1 24 944 968 944 970 0.90 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF423-201 - 1284 4.2e-24 83.9 189.6 25 30 0.025 35 5.1 0.2 13 25 1062 1074 1060 1075 0.88 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF423-201 - 1284 4.2e-24 83.9 189.6 26 30 0.24 3.3e+02 2.0 0.5 15 25 1120 1130 1114 1131 0.84 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF423-201 - 1284 4.2e-24 83.9 189.6 27 30 0.026 36 5.0 3.0 2 26 1135 1179 1134 1179 0.59 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF423-201 - 1284 4.2e-24 83.9 189.6 28 30 0.0038 5.2 7.7 0.0 5 25 1186 1208 1184 1209 0.80 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF423-201 - 1284 4.2e-24 83.9 189.6 29 30 0.038 53 4.5 0.2 5 24 1216 1238 1216 1240 0.76 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF423-201 - 1284 4.2e-24 83.9 189.6 30 30 0.00036 0.49 10.9 0.2 2 24 1244 1268 1243 1269 0.86 Zinc-finger double domain zf-Di19 PF05605.12 54 ZNF423-201 - 1284 9.3e-24 83.5 184.9 1 23 0.69 9.5e+02 0.2 0.8 3 20 67 85 65 91 0.76 Drought induced 19 protein (Di19), zinc-binding zf-Di19 PF05605.12 54 ZNF423-201 - 1284 9.3e-24 83.5 184.9 2 23 0.073 1e+02 3.3 2.8 3 51 138 187 137 190 0.66 Drought induced 19 protein (Di19), zinc-binding zf-Di19 PF05605.12 54 ZNF423-201 - 1284 9.3e-24 83.5 184.9 3 23 1.4 1.9e+03 -0.7 5.7 3 50 166 214 164 218 0.71 Drought induced 19 protein (Di19), zinc-binding zf-Di19 PF05605.12 54 ZNF423-201 - 1284 9.3e-24 83.5 184.9 4 23 0.12 1.6e+02 2.7 6.1 3 51 194 243 192 251 0.62 Drought induced 19 protein (Di19), zinc-binding zf-Di19 PF05605.12 54 ZNF423-201 - 1284 9.3e-24 83.5 184.9 5 23 0.00083 1.1 9.6 1.0 2 29 262 290 261 293 0.82 Drought induced 19 protein (Di19), zinc-binding zf-Di19 PF05605.12 54 ZNF423-201 - 1284 9.3e-24 83.5 184.9 6 23 0.00014 0.19 12.0 9.7 3 50 295 343 293 347 0.79 Drought induced 19 protein (Di19), zinc-binding zf-Di19 PF05605.12 54 ZNF423-201 - 1284 9.3e-24 83.5 184.9 7 23 6.8e-07 0.00094 19.4 4.2 3 53 409 464 407 468 0.80 Drought induced 19 protein (Di19), zinc-binding zf-Di19 PF05605.12 54 ZNF423-201 - 1284 9.3e-24 83.5 184.9 8 23 8.8e-05 0.12 12.7 0.8 2 28 479 506 478 510 0.86 Drought induced 19 protein (Di19), zinc-binding zf-Di19 PF05605.12 54 ZNF423-201 - 1284 9.3e-24 83.5 184.9 9 23 0.00063 0.86 9.9 0.3 2 27 516 542 515 547 0.89 Drought induced 19 protein (Di19), zinc-binding zf-Di19 PF05605.12 54 ZNF423-201 - 1284 9.3e-24 83.5 184.9 10 23 0.00028 0.39 11.1 0.1 3 26 563 589 561 594 0.83 Drought induced 19 protein (Di19), zinc-binding zf-Di19 PF05605.12 54 ZNF423-201 - 1284 9.3e-24 83.5 184.9 11 23 9.6 1.3e+04 -3.5 0.2 3 22 632 652 630 654 0.56 Drought induced 19 protein (Di19), zinc-binding zf-Di19 PF05605.12 54 ZNF423-201 - 1284 9.3e-24 83.5 184.9 12 23 2e-07 0.00028 21.1 4.9 4 53 663 715 660 716 0.86 Drought induced 19 protein (Di19), zinc-binding zf-Di19 PF05605.12 54 ZNF423-201 - 1284 9.3e-24 83.5 184.9 13 23 0.00015 0.2 12.0 5.5 3 53 720 773 719 774 0.81 Drought induced 19 protein (Di19), zinc-binding zf-Di19 PF05605.12 54 ZNF423-201 - 1284 9.3e-24 83.5 184.9 14 23 0.0073 10 6.5 1.7 4 25 782 803 779 807 0.82 Drought induced 19 protein (Di19), zinc-binding zf-Di19 PF05605.12 54 ZNF423-201 - 1284 9.3e-24 83.5 184.9 15 23 0.003 4.2 7.7 1.9 2 27 806 832 805 837 0.82 Drought induced 19 protein (Di19), zinc-binding zf-Di19 PF05605.12 54 ZNF423-201 - 1284 9.3e-24 83.5 184.9 16 23 1.8 2.5e+03 -1.1 0.0 4 25 887 909 885 912 0.62 Drought induced 19 protein (Di19), zinc-binding zf-Di19 PF05605.12 54 ZNF423-201 - 1284 9.3e-24 83.5 184.9 17 23 1.8e-07 0.00024 21.3 2.5 3 42 930 969 928 983 0.83 Drought induced 19 protein (Di19), zinc-binding zf-Di19 PF05605.12 54 ZNF423-201 - 1284 9.3e-24 83.5 184.9 18 23 0.028 39 4.6 2.1 16 51 973 1009 970 1011 0.76 Drought induced 19 protein (Di19), zinc-binding zf-Di19 PF05605.12 54 ZNF423-201 - 1284 9.3e-24 83.5 184.9 19 23 0.014 19 5.7 3.5 4 46 989 1034 986 1044 0.74 Drought induced 19 protein (Di19), zinc-binding zf-Di19 PF05605.12 54 ZNF423-201 - 1284 9.3e-24 83.5 184.9 20 23 4.6 6.4e+03 -2.5 0.0 32 42 1064 1074 1061 1081 0.56 Drought induced 19 protein (Di19), zinc-binding zf-Di19 PF05605.12 54 ZNF423-201 - 1284 9.3e-24 83.5 184.9 21 23 0.0033 4.5 7.6 0.1 4 27 1121 1145 1118 1150 0.69 Drought induced 19 protein (Di19), zinc-binding zf-Di19 PF05605.12 54 ZNF423-201 - 1284 9.3e-24 83.5 184.9 22 23 1.2 1.6e+03 -0.5 5.5 2 50 1167 1218 1166 1221 0.74 Drought induced 19 protein (Di19), zinc-binding zf-Di19 PF05605.12 54 ZNF423-201 - 1284 9.3e-24 83.5 184.9 23 23 4e-07 0.00055 20.2 3.6 2 54 1228 1283 1227 1283 0.93 Drought induced 19 protein (Di19), zinc-binding zf-C2H2_6 PF13912.6 27 ZNF423-201 - 1284 4.2e-22 77.6 174.7 1 27 0.0024 3.2 7.8 0.1 2 23 67 88 66 89 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF423-201 - 1284 4.2e-22 77.6 174.7 2 27 0.049 68 3.6 0.4 2 11 138 147 138 151 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF423-201 - 1284 4.2e-22 77.6 174.7 3 27 0.037 52 4.0 2.5 2 12 166 176 166 177 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF423-201 - 1284 4.2e-22 77.6 174.7 4 27 0.019 26 4.9 6.2 2 26 194 218 193 219 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF423-201 - 1284 4.2e-22 77.6 174.7 5 27 7.6e-06 0.011 15.8 3.0 2 26 222 246 222 247 0.96 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF423-201 - 1284 4.2e-22 77.6 174.7 6 27 0.026 36 4.5 0.1 2 20 263 281 262 288 0.82 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF423-201 - 1284 4.2e-22 77.6 174.7 7 27 0.1 1.4e+02 2.6 1.5 2 25 323 346 322 348 0.75 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF423-201 - 1284 4.2e-22 77.6 174.7 8 27 0.00029 0.4 10.7 0.1 1 24 408 433 408 436 0.91 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF423-201 - 1284 4.2e-22 77.6 174.7 9 27 5.7e-05 0.078 13.0 0.3 2 24 441 464 440 466 0.88 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF423-201 - 1284 4.2e-22 77.6 174.7 10 27 0.25 3.5e+02 1.4 0.0 2 20 480 498 479 501 0.89 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF423-201 - 1284 4.2e-22 77.6 174.7 11 27 0.15 2e+02 2.1 0.6 2 20 517 535 516 540 0.89 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF423-201 - 1284 4.2e-22 77.6 174.7 12 27 0.73 1e+03 -0.1 0.2 1 10 562 571 562 589 0.66 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF423-201 - 1284 4.2e-22 77.6 174.7 13 27 0.052 71 3.6 0.9 2 24 632 654 632 656 0.90 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF423-201 - 1284 4.2e-22 77.6 174.7 14 27 0.0034 4.7 7.3 0.2 4 24 664 684 663 686 0.90 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF423-201 - 1284 4.2e-22 77.6 174.7 15 27 1.2e-05 0.017 15.1 0.4 1 21 691 711 691 713 0.95 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF423-201 - 1284 4.2e-22 77.6 174.7 16 27 0.17 2.3e+02 1.9 0.2 2 13 720 731 719 742 0.89 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF423-201 - 1284 4.2e-22 77.6 174.7 17 27 0.39 5.4e+02 0.8 0.3 2 24 750 773 749 775 0.81 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF423-201 - 1284 4.2e-22 77.6 174.7 18 27 0.0044 6.1 7.0 2.8 1 26 780 805 780 806 0.91 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF423-201 - 1284 4.2e-22 77.6 174.7 19 27 0.0084 12 6.1 2.3 2 25 807 830 806 830 0.88 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF423-201 - 1284 4.2e-22 77.6 174.7 20 27 0.013 17 5.5 0.0 2 21 886 905 885 910 0.80 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF423-201 - 1284 4.2e-22 77.6 174.7 21 27 3.3e-08 4.5e-05 23.3 1.2 2 26 930 954 929 955 0.95 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF423-201 - 1284 4.2e-22 77.6 174.7 22 27 6.7e-07 0.00093 19.1 0.3 1 26 958 983 958 984 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF423-201 - 1284 4.2e-22 77.6 174.7 23 27 0.0005 0.69 10.0 0.4 2 17 1064 1079 1063 1081 0.92 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF423-201 - 1284 4.2e-22 77.6 174.7 24 27 0.00016 0.22 11.6 0.1 3 25 1121 1144 1121 1145 0.86 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF423-201 - 1284 4.2e-22 77.6 174.7 25 27 0.11 1.5e+02 2.6 0.9 2 13 1198 1209 1197 1221 0.81 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF423-201 - 1284 4.2e-22 77.6 174.7 26 27 0.98 1.4e+03 -0.5 1.1 2 9 1229 1236 1228 1239 0.77 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF423-201 - 1284 4.2e-22 77.6 174.7 27 27 2 2.8e+03 -1.5 0.4 2 21 1259 1278 1258 1283 0.66 C2H2-type zinc finger zf-C2H2_jaz PF12171.8 27 ZNF423-201 - 1284 5.8e-19 67.9 166.5 1 28 0.23 3.2e+02 1.8 0.3 2 20 67 85 66 87 0.88 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF423-201 - 1284 5.8e-19 67.9 166.5 2 28 0.00028 0.38 11.1 0.2 2 21 138 157 137 158 0.91 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF423-201 - 1284 5.8e-19 67.9 166.5 3 28 0.00041 0.57 10.5 0.7 2 22 166 186 165 186 0.95 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF423-201 - 1284 5.8e-19 67.9 166.5 4 28 0.21 2.9e+02 1.9 4.1 4 24 196 216 193 217 0.91 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF423-201 - 1284 5.8e-19 67.9 166.5 5 28 4.3e-05 0.059 13.7 1.9 2 21 222 241 221 251 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF423-201 - 1284 5.8e-19 67.9 166.5 6 28 0.31 4.3e+02 1.4 0.2 2 21 263 282 262 285 0.87 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF423-201 - 1284 5.8e-19 67.9 166.5 7 28 0.0005 0.69 10.3 0.2 4 21 297 314 295 317 0.96 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF423-201 - 1284 5.8e-19 67.9 166.5 8 28 0.21 2.9e+02 1.9 0.1 1 13 322 334 322 336 0.88 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF423-201 - 1284 5.8e-19 67.9 166.5 9 28 0.0019 2.7 8.4 0.1 2 23 409 431 408 434 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF423-201 - 1284 5.8e-19 67.9 166.5 10 28 0.0012 1.6 9.1 0.4 4 22 482 500 479 500 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF423-201 - 1284 5.8e-19 67.9 166.5 11 28 0.00081 1.1 9.6 0.2 2 21 517 536 516 538 0.95 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF423-201 - 1284 5.8e-19 67.9 166.5 12 28 0.022 30 5.1 1.3 2 22 632 652 631 652 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF423-201 - 1284 5.8e-19 67.9 166.5 13 28 0.0074 10 6.5 0.1 4 21 664 681 663 682 0.95 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF423-201 - 1284 5.8e-19 67.9 166.5 14 28 7.1e-06 0.0098 16.2 0.8 2 21 692 711 691 712 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF423-201 - 1284 5.8e-19 67.9 166.5 15 28 0.15 2.1e+02 2.4 0.4 4 21 722 739 720 740 0.91 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF423-201 - 1284 5.8e-19 67.9 166.5 16 28 0.0016 2.2 8.7 0.2 2 22 750 770 749 770 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF423-201 - 1284 5.8e-19 67.9 166.5 17 28 0.006 8.3 6.8 1.7 2 24 781 803 780 805 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF423-201 - 1284 5.8e-19 67.9 166.5 18 28 0.003 4.1 7.8 2.0 1 24 806 829 806 829 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF423-201 - 1284 5.8e-19 67.9 166.5 19 28 1.6 2.2e+03 -0.9 0.0 4 20 888 904 887 905 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF423-201 - 1284 5.8e-19 67.9 166.5 20 28 1.8e-05 0.025 14.9 0.7 2 24 930 952 929 953 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF423-201 - 1284 5.8e-19 67.9 166.5 21 28 0.13 1.8e+02 2.5 0.0 2 23 959 980 958 982 0.88 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF423-201 - 1284 5.8e-19 67.9 166.5 22 28 0.55 7.6e+02 0.6 0.7 4 21 990 1007 989 1008 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF423-201 - 1284 5.8e-19 67.9 166.5 23 28 4.7 6.5e+03 -2.4 0.2 2 7 1020 1025 1019 1025 0.91 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF423-201 - 1284 5.8e-19 67.9 166.5 24 28 0.17 2.4e+02 2.2 0.3 2 18 1064 1080 1063 1081 0.89 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF423-201 - 1284 5.8e-19 67.9 166.5 25 28 0.00023 0.32 11.3 0.0 3 21 1121 1139 1119 1140 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF423-201 - 1284 5.8e-19 67.9 166.5 26 28 0.058 80 3.7 0.9 4 21 1170 1187 1167 1190 0.88 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF423-201 - 1284 5.8e-19 67.9 166.5 27 28 0.13 1.8e+02 2.6 1.0 2 16 1198 1212 1197 1220 0.81 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF423-201 - 1284 5.8e-19 67.9 166.5 28 28 0.55 7.5e+02 0.6 0.4 2 21 1229 1248 1228 1248 0.90 Zinc-finger double-stranded RNA-binding # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF423-201.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF423-201.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF423-201.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF423-201.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF423-201.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:06:05 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-C2H2_4 PF13894.6 24 ZNF423-202 - 1167 1.7e-69 224.4 211.7 1 30 5.3e-05 0.074 13.9 1.0 1 23 21 43 21 44 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF423-202 - 1167 1.7e-69 224.4 211.7 2 30 0.0027 3.8 8.6 4.5 1 23 49 71 49 72 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF423-202 - 1167 1.7e-69 224.4 211.7 3 30 0.00012 0.17 12.8 4.6 1 23 77 99 77 100 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF423-202 - 1167 1.7e-69 224.4 211.7 4 30 2.5e-07 0.00035 21.2 1.7 1 23 105 127 105 128 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF423-202 - 1167 1.7e-69 224.4 211.7 5 30 1.4e-05 0.02 15.7 0.4 1 24 146 169 146 169 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF423-202 - 1167 1.7e-69 224.4 211.7 6 30 0.00015 0.2 12.6 0.4 2 24 179 201 178 201 0.91 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF423-202 - 1167 1.7e-69 224.4 211.7 7 30 0.00034 0.47 11.4 2.4 1 23 206 228 206 229 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF423-202 - 1167 1.7e-69 224.4 211.7 8 30 0.00039 0.54 11.2 0.2 1 24 292 316 292 316 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF423-202 - 1167 1.7e-69 224.4 211.7 9 30 0.0041 5.7 8.1 0.6 1 24 324 347 324 347 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF423-202 - 1167 1.7e-69 224.4 211.7 10 30 3.3e-05 0.045 14.6 0.5 1 24 363 386 363 386 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF423-202 - 1167 1.7e-69 224.4 211.7 11 30 0.00097 1.3 10.0 0.4 1 24 400 423 400 423 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF423-202 - 1167 1.7e-69 224.4 211.7 12 30 0.0058 8 7.6 0.2 1 23 446 470 446 471 0.91 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF423-202 - 1167 1.7e-69 224.4 211.7 13 30 6.1e-05 0.084 13.8 1.1 1 23 515 537 515 538 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF423-202 - 1167 1.7e-69 224.4 211.7 14 30 1.7e-05 0.023 15.5 0.2 3 23 547 567 546 568 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF423-202 - 1167 1.7e-69 224.4 211.7 15 30 2e-06 0.0028 18.4 0.3 1 24 575 598 575 598 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF423-202 - 1167 1.7e-69 224.4 211.7 16 30 6.9e-05 0.095 13.6 0.8 1 24 603 626 603 626 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF423-202 - 1167 1.7e-69 224.4 211.7 17 30 0.00034 0.47 11.4 1.0 1 24 633 656 633 656 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF423-202 - 1167 1.7e-69 224.4 211.7 18 30 3.4e-05 0.047 14.6 2.6 1 23 664 686 664 687 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF423-202 - 1167 1.7e-69 224.4 211.7 19 30 0.0035 4.9 8.3 1.6 1 24 690 713 690 713 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF423-202 - 1167 1.7e-69 224.4 211.7 20 30 0.0027 3.7 8.7 0.0 2 24 770 792 769 792 0.89 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF423-202 - 1167 1.7e-69 224.4 211.7 21 30 4e-06 0.0055 17.4 2.1 1 23 813 835 813 836 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF423-202 - 1167 1.7e-69 224.4 211.7 22 30 1e-05 0.014 16.2 0.2 1 23 842 864 842 865 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF423-202 - 1167 1.7e-69 224.4 211.7 23 30 0.035 48 5.2 0.8 2 23 872 893 872 894 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF423-202 - 1167 1.7e-69 224.4 211.7 24 30 0.5 6.8e+02 1.6 0.2 1 19 903 921 903 925 0.90 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF423-202 - 1167 1.7e-69 224.4 211.7 25 30 0.018 25 6.0 0.2 1 17 947 963 947 964 0.91 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF423-202 - 1167 1.7e-69 224.4 211.7 26 30 6.2e-05 0.085 13.7 0.1 2 24 1004 1026 1003 1026 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF423-202 - 1167 1.7e-69 224.4 211.7 27 30 0.00096 1.3 10.0 0.1 1 23 1051 1073 1051 1074 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF423-202 - 1167 1.7e-69 224.4 211.7 28 30 0.00014 0.19 12.7 2.2 1 23 1081 1103 1081 1104 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF423-202 - 1167 1.7e-69 224.4 211.7 29 30 4.9e-06 0.0067 17.2 0.4 1 24 1112 1135 1112 1135 0.98 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF423-202 - 1167 1.7e-69 224.4 211.7 30 30 0.0028 3.9 8.6 1.2 3 24 1144 1165 1142 1165 0.92 C2H2-type zinc finger zf-C2H2 PF00096.26 23 ZNF423-202 - 1167 8e-57 186.7 208.7 1 30 3.1e-07 0.00042 20.6 1.2 1 23 21 43 21 43 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF423-202 - 1167 8e-57 186.7 208.7 2 30 0.0015 2.1 9.0 6.5 1 23 49 71 49 71 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF423-202 - 1167 8e-57 186.7 208.7 3 30 2.7e-06 0.0037 17.6 5.0 1 23 77 99 77 99 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF423-202 - 1167 8e-57 186.7 208.7 4 30 2.1e-07 0.00029 21.1 1.4 1 23 105 127 105 127 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF423-202 - 1167 8e-57 186.7 208.7 5 30 4.1e-05 0.057 13.9 0.4 1 23 146 169 146 169 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF423-202 - 1167 8e-57 186.7 208.7 6 30 0.0085 12 6.6 0.3 2 23 179 201 178 201 0.90 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF423-202 - 1167 8e-57 186.7 208.7 7 30 0.085 1.2e+02 3.5 1.2 1 12 206 217 206 228 0.85 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF423-202 - 1167 8e-57 186.7 208.7 8 30 0.0002 0.28 11.7 0.2 1 23 292 316 292 316 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF423-202 - 1167 8e-57 186.7 208.7 9 30 0.018 25 5.6 0.9 1 23 324 347 324 347 0.95 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF423-202 - 1167 8e-57 186.7 208.7 10 30 6.2e-06 0.0086 16.5 0.5 1 23 363 386 363 386 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF423-202 - 1167 8e-57 186.7 208.7 11 30 0.0012 1.6 9.3 0.3 1 23 400 423 400 423 0.95 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF423-202 - 1167 8e-57 186.7 208.7 12 30 0.0033 4.6 7.9 0.3 1 23 446 471 446 471 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF423-202 - 1167 8e-57 186.7 208.7 13 30 2.3e-05 0.031 14.7 1.5 1 23 515 537 515 537 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF423-202 - 1167 8e-57 186.7 208.7 14 30 0.00024 0.33 11.5 0.1 3 23 547 567 546 567 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF423-202 - 1167 8e-57 186.7 208.7 15 30 6.3e-06 0.0087 16.5 0.3 1 23 575 598 575 598 0.94 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF423-202 - 1167 8e-57 186.7 208.7 16 30 0.00079 1.1 9.9 0.5 1 23 603 626 603 626 0.95 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF423-202 - 1167 8e-57 186.7 208.7 17 30 0.00013 0.18 12.3 0.8 1 23 633 656 633 656 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF423-202 - 1167 8e-57 186.7 208.7 18 30 0.017 24 5.6 2.4 1 23 664 686 664 686 0.92 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF423-202 - 1167 8e-57 186.7 208.7 19 30 0.00016 0.22 12.1 1.4 1 23 690 713 690 713 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF423-202 - 1167 8e-57 186.7 208.7 20 30 0.0025 3.5 8.3 0.0 3 23 771 792 769 792 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF423-202 - 1167 8e-57 186.7 208.7 21 30 4.4e-05 0.061 13.8 2.4 1 23 813 835 813 835 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF423-202 - 1167 8e-57 186.7 208.7 22 30 4.9e-05 0.068 13.7 0.1 1 23 842 864 842 864 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF423-202 - 1167 8e-57 186.7 208.7 23 30 1 1.4e+03 0.1 0.9 2 23 872 893 872 893 0.86 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF423-202 - 1167 8e-57 186.7 208.7 24 30 1.2 1.7e+03 -0.2 0.3 1 19 903 921 903 925 0.86 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF423-202 - 1167 8e-57 186.7 208.7 25 30 0.014 20 5.9 0.3 1 18 947 964 947 964 0.94 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF423-202 - 1167 8e-57 186.7 208.7 26 30 3.2e-06 0.0044 17.4 0.1 2 23 1004 1026 1003 1026 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF423-202 - 1167 8e-57 186.7 208.7 27 30 0.053 73 4.1 0.1 1 23 1051 1073 1051 1073 0.94 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF423-202 - 1167 8e-57 186.7 208.7 28 30 0.02 27 5.5 1.7 1 23 1081 1103 1081 1103 0.90 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF423-202 - 1167 8e-57 186.7 208.7 29 30 5.7e-05 0.079 13.5 0.2 1 23 1112 1135 1112 1135 0.93 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF423-202 - 1167 8e-57 186.7 208.7 30 30 0.00042 0.58 10.7 1.5 1 23 1142 1165 1142 1165 0.96 Zinc finger, C2H2 type zf-Di19 PF05605.12 54 ZNF423-202 - 1167 5.1e-26 90.7 177.6 1 22 0.076 1e+02 3.3 3.0 3 51 21 70 20 73 0.66 Drought induced 19 protein (Di19), zinc-binding zf-Di19 PF05605.12 54 ZNF423-202 - 1167 5.1e-26 90.7 177.6 2 22 1.4 2e+03 -0.8 5.9 3 50 49 97 47 102 0.71 Drought induced 19 protein (Di19), zinc-binding zf-Di19 PF05605.12 54 ZNF423-202 - 1167 5.1e-26 90.7 177.6 3 22 0.12 1.6e+02 2.6 6.2 3 51 77 126 75 133 0.63 Drought induced 19 protein (Di19), zinc-binding zf-Di19 PF05605.12 54 ZNF423-202 - 1167 5.1e-26 90.7 177.6 4 22 0.00074 1 9.7 1.0 2 29 145 173 144 176 0.82 Drought induced 19 protein (Di19), zinc-binding zf-Di19 PF05605.12 54 ZNF423-202 - 1167 5.1e-26 90.7 177.6 5 22 0.00012 0.17 12.2 9.7 3 50 178 226 176 230 0.79 Drought induced 19 protein (Di19), zinc-binding zf-Di19 PF05605.12 54 ZNF423-202 - 1167 5.1e-26 90.7 177.6 6 22 6.1e-07 0.00084 19.6 4.2 3 53 292 347 290 351 0.80 Drought induced 19 protein (Di19), zinc-binding zf-Di19 PF05605.12 54 ZNF423-202 - 1167 5.1e-26 90.7 177.6 7 22 7.9e-05 0.11 12.8 0.8 2 28 362 389 361 393 0.86 Drought induced 19 protein (Di19), zinc-binding zf-Di19 PF05605.12 54 ZNF423-202 - 1167 5.1e-26 90.7 177.6 8 22 0.00056 0.78 10.1 0.3 2 27 399 425 398 430 0.89 Drought induced 19 protein (Di19), zinc-binding zf-Di19 PF05605.12 54 ZNF423-202 - 1167 5.1e-26 90.7 177.6 9 22 0.00025 0.35 11.2 0.1 3 26 446 472 444 477 0.83 Drought induced 19 protein (Di19), zinc-binding zf-Di19 PF05605.12 54 ZNF423-202 - 1167 5.1e-26 90.7 177.6 10 22 8.7 1.2e+04 -3.3 0.2 3 22 515 535 513 537 0.56 Drought induced 19 protein (Di19), zinc-binding zf-Di19 PF05605.12 54 ZNF423-202 - 1167 5.1e-26 90.7 177.6 11 22 1.8e-07 0.00025 21.3 4.9 4 53 546 598 543 599 0.86 Drought induced 19 protein (Di19), zinc-binding zf-Di19 PF05605.12 54 ZNF423-202 - 1167 5.1e-26 90.7 177.6 12 22 0.00013 0.18 12.1 5.5 3 53 603 656 602 657 0.81 Drought induced 19 protein (Di19), zinc-binding zf-Di19 PF05605.12 54 ZNF423-202 - 1167 5.1e-26 90.7 177.6 13 22 0.0066 9.1 6.7 1.8 4 25 665 686 662 690 0.82 Drought induced 19 protein (Di19), zinc-binding zf-Di19 PF05605.12 54 ZNF423-202 - 1167 5.1e-26 90.7 177.6 14 22 0.0027 3.8 7.9 1.9 2 27 689 715 688 720 0.82 Drought induced 19 protein (Di19), zinc-binding zf-Di19 PF05605.12 54 ZNF423-202 - 1167 5.1e-26 90.7 177.6 15 22 1.6 2.2e+03 -1.0 0.0 4 25 770 792 768 795 0.62 Drought induced 19 protein (Di19), zinc-binding zf-Di19 PF05605.12 54 ZNF423-202 - 1167 5.1e-26 90.7 177.6 16 22 1.6e-07 0.00022 21.4 2.6 3 42 813 852 811 866 0.83 Drought induced 19 protein (Di19), zinc-binding zf-Di19 PF05605.12 54 ZNF423-202 - 1167 5.1e-26 90.7 177.6 17 22 0.026 36 4.8 2.1 16 51 856 892 853 894 0.76 Drought induced 19 protein (Di19), zinc-binding zf-Di19 PF05605.12 54 ZNF423-202 - 1167 5.1e-26 90.7 177.6 18 22 0.012 17 5.8 3.5 4 46 872 917 869 927 0.74 Drought induced 19 protein (Di19), zinc-binding zf-Di19 PF05605.12 54 ZNF423-202 - 1167 5.1e-26 90.7 177.6 19 22 4.2 5.8e+03 -2.3 0.0 32 42 947 957 944 964 0.56 Drought induced 19 protein (Di19), zinc-binding zf-Di19 PF05605.12 54 ZNF423-202 - 1167 5.1e-26 90.7 177.6 20 22 0.0029 4 7.8 0.1 4 27 1004 1028 1001 1033 0.69 Drought induced 19 protein (Di19), zinc-binding zf-Di19 PF05605.12 54 ZNF423-202 - 1167 5.1e-26 90.7 177.6 21 22 1 1.4e+03 -0.4 5.6 2 50 1050 1101 1049 1104 0.74 Drought induced 19 protein (Di19), zinc-binding zf-Di19 PF05605.12 54 ZNF423-202 - 1167 5.1e-26 90.7 177.6 22 22 3.6e-07 0.00049 20.3 3.6 2 54 1111 1166 1110 1166 0.93 Drought induced 19 protein (Di19), zinc-binding zf-H2C2_2 PF13465.6 26 ZNF423-202 - 1167 2.5e-23 81.4 191.2 1 29 0.0015 2.1 8.9 0.1 14 24 20 30 13 32 0.90 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF423-202 - 1167 2.5e-23 81.4 191.2 2 29 3.4e-05 0.046 14.2 4.2 2 26 36 60 35 60 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF423-202 - 1167 2.5e-23 81.4 191.2 3 29 1.9e-07 0.00026 21.3 2.9 4 25 66 87 63 88 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF423-202 - 1167 2.5e-23 81.4 191.2 4 29 2.8e-06 0.0038 17.6 3.3 1 25 91 115 91 116 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF423-202 - 1167 2.5e-23 81.4 191.2 5 29 0.0019 2.6 8.6 0.7 2 25 120 156 119 157 0.62 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF423-202 - 1167 2.5e-23 81.4 191.2 6 29 0.006 8.3 7.0 0.1 2 25 161 188 160 189 0.83 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF423-202 - 1167 2.5e-23 81.4 191.2 7 29 0.032 45 4.7 0.6 5 25 196 216 193 217 0.75 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF423-202 - 1167 2.5e-23 81.4 191.2 8 29 0.12 1.7e+02 2.9 0.3 15 22 292 299 286 300 0.86 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF423-202 - 1167 2.5e-23 81.4 191.2 9 29 0.44 6.1e+02 1.1 0.2 4 22 310 331 308 332 0.67 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF423-202 - 1167 2.5e-23 81.4 191.2 10 29 0.005 6.9 7.3 0.6 1 25 338 373 338 374 0.72 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF423-202 - 1167 2.5e-23 81.4 191.2 11 29 0.037 51 4.5 0.1 1 25 377 410 377 411 0.75 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF423-202 - 1167 2.5e-23 81.4 191.2 12 29 0.83 1.1e+03 0.3 0.2 15 21 446 452 438 454 0.80 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF423-202 - 1167 2.5e-23 81.4 191.2 13 29 1.1 1.5e+03 -0.1 0.4 2 10 463 472 462 481 0.86 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF423-202 - 1167 2.5e-23 81.4 191.2 14 29 0.35 4.8e+02 1.5 0.1 14 26 514 526 508 526 0.87 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF423-202 - 1167 2.5e-23 81.4 191.2 15 29 0.4 5.5e+02 1.3 0.1 16 25 546 555 529 556 0.63 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF423-202 - 1167 2.5e-23 81.4 191.2 16 29 0.0012 1.7 9.3 0.5 2 26 560 586 559 586 0.81 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF423-202 - 1167 2.5e-23 81.4 191.2 17 29 0.011 16 6.1 0.3 1 25 589 613 589 614 0.82 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF423-202 - 1167 2.5e-23 81.4 191.2 18 29 0.00087 1.2 9.7 0.1 5 21 621 639 618 643 0.86 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF423-202 - 1167 2.5e-23 81.4 191.2 19 29 0.00027 0.37 11.3 0.8 1 26 647 675 647 675 0.78 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF423-202 - 1167 2.5e-23 81.4 191.2 20 29 0.012 17 6.1 6.3 5 24 682 699 678 700 0.84 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF423-202 - 1167 2.5e-23 81.4 191.2 21 29 6 8.2e+03 -2.4 0.8 2 9 705 713 705 713 0.80 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF423-202 - 1167 2.5e-23 81.4 191.2 22 29 0.071 99 3.6 0.1 14 24 812 822 784 824 0.62 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF423-202 - 1167 2.5e-23 81.4 191.2 23 29 9.3e-06 0.013 15.9 0.5 1 24 827 851 827 853 0.90 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF423-202 - 1167 2.5e-23 81.4 191.2 24 29 0.023 31 5.2 0.2 13 25 945 957 943 958 0.88 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF423-202 - 1167 2.5e-23 81.4 191.2 25 29 0.21 2.9e+02 2.1 0.5 15 25 1003 1013 997 1014 0.84 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF423-202 - 1167 2.5e-23 81.4 191.2 26 29 0.027 38 4.9 3.3 2 26 1018 1062 1017 1062 0.59 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF423-202 - 1167 2.5e-23 81.4 191.2 27 29 0.0034 4.7 7.8 0.0 5 25 1069 1091 1067 1092 0.80 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF423-202 - 1167 2.5e-23 81.4 191.2 28 29 0.035 48 4.6 0.2 5 24 1099 1121 1099 1123 0.76 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF423-202 - 1167 2.5e-23 81.4 191.2 29 29 0.00032 0.44 11.1 0.2 2 24 1127 1151 1126 1152 0.86 Zinc-finger double domain zf-C2H2_6 PF13912.6 27 ZNF423-202 - 1167 2.3e-21 75.3 171.1 1 26 0.044 61 3.8 0.4 2 11 21 30 21 34 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF423-202 - 1167 2.3e-21 75.3 171.1 2 26 0.034 47 4.1 2.5 2 12 49 59 49 60 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF423-202 - 1167 2.3e-21 75.3 171.1 3 26 0.017 24 5.1 6.2 2 26 77 101 76 102 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF423-202 - 1167 2.3e-21 75.3 171.1 4 26 6.9e-06 0.0095 15.9 3.0 2 26 105 129 105 130 0.96 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF423-202 - 1167 2.3e-21 75.3 171.1 5 26 0.024 33 4.6 0.1 2 20 146 164 145 171 0.82 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF423-202 - 1167 2.3e-21 75.3 171.1 6 26 0.093 1.3e+02 2.7 1.5 2 25 206 229 205 231 0.76 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF423-202 - 1167 2.3e-21 75.3 171.1 7 26 0.00026 0.36 10.9 0.1 1 24 291 316 291 319 0.91 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF423-202 - 1167 2.3e-21 75.3 171.1 8 26 5.1e-05 0.071 13.1 0.3 2 24 324 347 323 349 0.88 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF423-202 - 1167 2.3e-21 75.3 171.1 9 26 0.23 3.2e+02 1.5 0.1 2 20 363 381 362 385 0.89 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF423-202 - 1167 2.3e-21 75.3 171.1 10 26 0.13 1.8e+02 2.3 0.6 2 20 400 418 399 423 0.89 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF423-202 - 1167 2.3e-21 75.3 171.1 11 26 0.66 9.1e+02 0.0 0.2 1 10 445 454 445 472 0.66 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF423-202 - 1167 2.3e-21 75.3 171.1 12 26 0.046 64 3.7 0.9 2 24 515 537 515 539 0.90 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF423-202 - 1167 2.3e-21 75.3 171.1 13 26 0.0031 4.3 7.5 0.2 4 24 547 567 546 569 0.90 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF423-202 - 1167 2.3e-21 75.3 171.1 14 26 1.1e-05 0.015 15.3 0.4 1 21 574 594 574 596 0.95 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF423-202 - 1167 2.3e-21 75.3 171.1 15 26 0.16 2.1e+02 2.0 0.3 2 13 603 614 602 626 0.88 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF423-202 - 1167 2.3e-21 75.3 171.1 16 26 0.35 4.8e+02 0.9 0.3 2 24 633 656 632 658 0.81 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF423-202 - 1167 2.3e-21 75.3 171.1 17 26 0.004 5.5 7.1 2.8 1 26 663 688 663 689 0.91 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF423-202 - 1167 2.3e-21 75.3 171.1 18 26 0.0074 10 6.2 2.3 2 25 690 713 689 713 0.88 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF423-202 - 1167 2.3e-21 75.3 171.1 19 26 0.011 16 5.7 0.0 2 21 769 788 768 793 0.80 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF423-202 - 1167 2.3e-21 75.3 171.1 20 26 2.9e-08 4e-05 23.5 1.2 2 26 813 837 812 838 0.95 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF423-202 - 1167 2.3e-21 75.3 171.1 21 26 6e-07 0.00083 19.3 0.3 1 26 841 866 841 867 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF423-202 - 1167 2.3e-21 75.3 171.1 22 26 0.00045 0.62 10.1 0.4 2 17 947 962 946 964 0.92 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF423-202 - 1167 2.3e-21 75.3 171.1 23 26 0.00014 0.2 11.7 0.1 3 25 1004 1027 1004 1028 0.86 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF423-202 - 1167 2.3e-21 75.3 171.1 24 26 0.096 1.3e+02 2.7 0.9 2 13 1081 1092 1080 1104 0.81 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF423-202 - 1167 2.3e-21 75.3 171.1 25 26 0.89 1.2e+03 -0.4 1.1 2 9 1112 1119 1111 1122 0.77 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF423-202 - 1167 2.3e-21 75.3 171.1 26 26 1.6 2.2e+03 -1.2 0.5 2 24 1142 1165 1141 1167 0.70 C2H2-type zinc finger zf-C2H2_jaz PF12171.8 27 ZNF423-202 - 1167 7.5e-21 73.9 160.6 1 27 0.00025 0.34 11.2 0.2 2 21 21 40 20 41 0.91 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF423-202 - 1167 7.5e-21 73.9 160.6 2 27 0.00037 0.51 10.7 0.7 2 22 49 69 48 69 0.95 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF423-202 - 1167 7.5e-21 73.9 160.6 3 27 0.19 2.6e+02 2.1 4.1 4 24 79 99 76 100 0.91 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF423-202 - 1167 7.5e-21 73.9 160.6 4 27 3.9e-05 0.053 13.8 1.9 2 21 105 124 104 134 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF423-202 - 1167 7.5e-21 73.9 160.6 5 27 0.28 3.9e+02 1.5 0.2 2 21 146 165 145 168 0.87 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF423-202 - 1167 7.5e-21 73.9 160.6 6 27 0.00045 0.62 10.4 0.2 4 21 180 197 178 200 0.96 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF423-202 - 1167 7.5e-21 73.9 160.6 7 27 0.19 2.6e+02 2.1 0.1 1 13 205 217 205 219 0.88 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF423-202 - 1167 7.5e-21 73.9 160.6 8 27 0.0017 2.4 8.5 0.1 2 23 292 314 291 317 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF423-202 - 1167 7.5e-21 73.9 160.6 9 27 0.0011 1.5 9.2 0.4 4 22 365 383 362 383 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF423-202 - 1167 7.5e-21 73.9 160.6 10 27 0.00073 1 9.7 0.2 2 21 400 419 399 421 0.95 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF423-202 - 1167 7.5e-21 73.9 160.6 11 27 0.019 27 5.2 1.3 2 22 515 535 514 535 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF423-202 - 1167 7.5e-21 73.9 160.6 12 27 0.0067 9.2 6.7 0.1 4 21 547 564 546 565 0.95 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF423-202 - 1167 7.5e-21 73.9 160.6 13 27 6.4e-06 0.0088 16.3 0.8 2 21 575 594 574 595 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF423-202 - 1167 7.5e-21 73.9 160.6 14 27 0.14 1.9e+02 2.5 0.4 4 21 605 622 603 623 0.91 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF423-202 - 1167 7.5e-21 73.9 160.6 15 27 0.0014 2 8.8 0.2 2 22 633 653 632 653 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF423-202 - 1167 7.5e-21 73.9 160.6 16 27 0.0054 7.5 7.0 1.7 2 24 664 686 663 688 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF423-202 - 1167 7.5e-21 73.9 160.6 17 27 0.0027 3.7 7.9 2.0 1 24 689 712 689 712 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF423-202 - 1167 7.5e-21 73.9 160.6 18 27 1.5 2e+03 -0.8 0.0 4 20 771 787 770 788 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF423-202 - 1167 7.5e-21 73.9 160.6 19 27 1.6e-05 0.022 15.0 0.7 2 24 813 835 812 836 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF423-202 - 1167 7.5e-21 73.9 160.6 20 27 0.12 1.7e+02 2.7 0.0 2 23 842 863 841 865 0.88 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF423-202 - 1167 7.5e-21 73.9 160.6 21 27 0.5 6.9e+02 0.7 0.7 4 21 873 890 872 891 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF423-202 - 1167 7.5e-21 73.9 160.6 22 27 4.3 5.9e+03 -2.3 0.2 2 7 903 908 902 908 0.91 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF423-202 - 1167 7.5e-21 73.9 160.6 23 27 0.16 2.2e+02 2.3 0.3 2 18 947 963 946 964 0.89 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF423-202 - 1167 7.5e-21 73.9 160.6 24 27 0.00021 0.29 11.5 0.0 3 21 1004 1022 1002 1023 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF423-202 - 1167 7.5e-21 73.9 160.6 25 27 0.052 72 3.8 0.9 4 21 1053 1070 1050 1073 0.88 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF423-202 - 1167 7.5e-21 73.9 160.6 26 27 0.11 1.6e+02 2.7 1.0 2 16 1081 1095 1080 1103 0.81 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF423-202 - 1167 7.5e-21 73.9 160.6 27 27 0.49 6.8e+02 0.7 0.4 2 21 1112 1131 1111 1131 0.90 Zinc-finger double-stranded RNA-binding zf-C2H2_2 PF12756.7 101 ZNF423-202 - 1167 7.3e-08 32.7 161.5 1 20 0.84 1.2e+03 -0.1 5.2 45 72 40 70 24 80 0.73 C2H2 type zinc-finger (2 copies) zf-C2H2_2 PF12756.7 101 ZNF423-202 - 1167 7.3e-08 32.7 161.5 2 20 0.00014 0.19 12.1 3.5 50 87 104 141 96 147 0.67 C2H2 type zinc-finger (2 copies) zf-C2H2_2 PF12756.7 101 ZNF423-202 - 1167 7.3e-08 32.7 161.5 3 20 0.0022 3 8.2 2.0 38 75 133 169 129 179 0.76 C2H2 type zinc-finger (2 copies) zf-C2H2_2 PF12756.7 101 ZNF423-202 - 1167 7.3e-08 32.7 161.5 4 20 0.00025 0.35 11.2 10.8 2 73 148 228 147 237 0.78 C2H2 type zinc-finger (2 copies) zf-C2H2_2 PF12756.7 101 ZNF423-202 - 1167 7.3e-08 32.7 161.5 5 20 0.077 1.1e+02 3.3 0.0 51 72 292 314 287 320 0.87 C2H2 type zinc-finger (2 copies) zf-C2H2_2 PF12756.7 101 ZNF423-202 - 1167 7.3e-08 32.7 161.5 6 20 0.12 1.6e+02 2.6 1.3 48 76 321 348 314 356 0.78 C2H2 type zinc-finger (2 copies) zf-C2H2_2 PF12756.7 101 ZNF423-202 - 1167 7.3e-08 32.7 161.5 7 20 0.0008 1.1 9.6 0.2 48 79 361 390 354 401 0.80 C2H2 type zinc-finger (2 copies) zf-C2H2_2 PF12756.7 101 ZNF423-202 - 1167 7.3e-08 32.7 161.5 8 20 0.038 52 4.3 3.3 38 85 434 481 402 488 0.66 C2H2 type zinc-finger (2 copies) zf-C2H2_2 PF12756.7 101 ZNF423-202 - 1167 7.3e-08 32.7 161.5 9 20 0.069 96 3.4 0.1 50 71 514 535 499 541 0.81 C2H2 type zinc-finger (2 copies) zf-C2H2_2 PF12756.7 101 ZNF423-202 - 1167 7.3e-08 32.7 161.5 10 20 0.0076 10 6.5 0.5 48 71 542 565 535 571 0.82 C2H2 type zinc-finger (2 copies) zf-C2H2_2 PF12756.7 101 ZNF423-202 - 1167 7.3e-08 32.7 161.5 11 20 0.015 21 5.5 11.7 2 72 577 654 576 664 0.75 C2H2 type zinc-finger (2 copies) zf-C2H2_2 PF12756.7 101 ZNF423-202 - 1167 7.3e-08 32.7 161.5 12 20 0.011 15 6.0 1.5 50 73 663 686 655 690 0.84 C2H2 type zinc-finger (2 copies) zf-C2H2_2 PF12756.7 101 ZNF423-202 - 1167 7.3e-08 32.7 161.5 13 20 0.0043 6 7.3 1.8 49 82 688 720 685 727 0.83 C2H2 type zinc-finger (2 copies) zf-C2H2_2 PF12756.7 101 ZNF423-202 - 1167 7.3e-08 32.7 161.5 14 20 0.0024 3.4 8.1 0.4 45 73 807 835 802 842 0.87 C2H2 type zinc-finger (2 copies) zf-C2H2_2 PF12756.7 101 ZNF423-202 - 1167 7.3e-08 32.7 161.5 15 20 0.19 2.7e+02 2.0 0.1 50 69 841 860 838 868 0.85 C2H2 type zinc-finger (2 copies) zf-C2H2_2 PF12756.7 101 ZNF423-202 - 1167 7.3e-08 32.7 161.5 16 20 2.9 4e+03 -1.8 5.8 9 69 880 921 872 964 0.46 C2H2 type zinc-finger (2 copies) zf-C2H2_2 PF12756.7 101 ZNF423-202 - 1167 7.3e-08 32.7 161.5 17 20 0.00029 0.4 11.0 0.0 50 82 1002 1033 997 1043 0.81 C2H2 type zinc-finger (2 copies) zf-C2H2_2 PF12756.7 101 ZNF423-202 - 1167 7.3e-08 32.7 161.5 18 20 0.037 51 4.3 0.9 50 72 1050 1072 1045 1078 0.84 C2H2 type zinc-finger (2 copies) zf-C2H2_2 PF12756.7 101 ZNF423-202 - 1167 7.3e-08 32.7 161.5 19 20 0.082 1.1e+02 3.2 1.6 50 73 1080 1103 1072 1109 0.79 C2H2 type zinc-finger (2 copies) zf-C2H2_2 PF12756.7 101 ZNF423-202 - 1167 7.3e-08 32.7 161.5 20 20 0.056 78 3.7 0.4 45 70 1106 1131 1100 1152 0.81 C2H2 type zinc-finger (2 copies) # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF423-202.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF423-202.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF423-202.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF423-202.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF423-202.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:06:05 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-C2H2_4 PF13894.6 24 ZNF423-203 - 1284 2e-70 227.3 218.6 1 31 0.00022 0.3 12.0 0.5 1 20 67 86 67 89 0.90 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF423-203 - 1284 2e-70 227.3 218.6 2 31 5.9e-05 0.082 13.8 1.0 1 23 138 160 138 161 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF423-203 - 1284 2e-70 227.3 218.6 3 31 0.003 4.2 8.5 4.5 1 23 166 188 166 189 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF423-203 - 1284 2e-70 227.3 218.6 4 31 0.00014 0.19 12.7 4.6 1 23 194 216 194 217 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF423-203 - 1284 2e-70 227.3 218.6 5 31 2.8e-07 0.00039 21.0 1.7 1 23 222 244 222 245 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF423-203 - 1284 2e-70 227.3 218.6 6 31 1.6e-05 0.022 15.6 0.4 1 24 263 286 263 286 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF423-203 - 1284 2e-70 227.3 218.6 7 31 0.00016 0.23 12.4 0.4 2 24 296 318 295 318 0.91 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF423-203 - 1284 2e-70 227.3 218.6 8 31 0.00038 0.53 11.3 2.4 1 23 323 345 323 346 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF423-203 - 1284 2e-70 227.3 218.6 9 31 0.00044 0.61 11.1 0.2 1 24 409 433 409 433 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF423-203 - 1284 2e-70 227.3 218.6 10 31 0.0046 6.4 7.9 0.6 1 24 441 464 441 464 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF423-203 - 1284 2e-70 227.3 218.6 11 31 3.6e-05 0.05 14.5 0.5 1 24 480 503 480 503 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF423-203 - 1284 2e-70 227.3 218.6 12 31 0.0011 1.5 9.9 0.4 1 24 517 540 517 540 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF423-203 - 1284 2e-70 227.3 218.6 13 31 0.0065 8.9 7.4 0.2 1 23 563 587 563 588 0.91 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF423-203 - 1284 2e-70 227.3 218.6 14 31 6.8e-05 0.094 13.6 1.1 1 23 632 654 632 655 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF423-203 - 1284 2e-70 227.3 218.6 15 31 1.9e-05 0.026 15.3 0.2 3 23 664 684 663 685 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF423-203 - 1284 2e-70 227.3 218.6 16 31 2.3e-06 0.0031 18.2 0.3 1 24 692 715 692 715 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF423-203 - 1284 2e-70 227.3 218.6 17 31 7.7e-05 0.11 13.4 0.8 1 24 720 743 720 743 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF423-203 - 1284 2e-70 227.3 218.6 18 31 0.00038 0.52 11.3 1.0 1 24 750 773 750 773 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF423-203 - 1284 2e-70 227.3 218.6 19 31 3.8e-05 0.052 14.4 2.6 1 23 781 803 781 804 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF423-203 - 1284 2e-70 227.3 218.6 20 31 0.0039 5.4 8.1 1.6 1 24 807 830 807 830 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF423-203 - 1284 2e-70 227.3 218.6 21 31 0.003 4.1 8.5 0.0 2 24 887 909 886 909 0.89 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF423-203 - 1284 2e-70 227.3 218.6 22 31 4.4e-06 0.0061 17.3 2.1 1 23 930 952 930 953 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF423-203 - 1284 2e-70 227.3 218.6 23 31 1.1e-05 0.016 16.0 0.2 1 23 959 981 959 982 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF423-203 - 1284 2e-70 227.3 218.6 24 31 0.039 53 5.0 0.8 2 23 989 1010 989 1011 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF423-203 - 1284 2e-70 227.3 218.6 25 31 0.55 7.6e+02 1.4 0.2 1 19 1020 1038 1020 1042 0.90 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF423-203 - 1284 2e-70 227.3 218.6 26 31 0.02 28 5.9 0.2 1 17 1064 1080 1064 1081 0.91 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF423-203 - 1284 2e-70 227.3 218.6 27 31 6.9e-05 0.095 13.6 0.1 2 24 1121 1143 1120 1143 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF423-203 - 1284 2e-70 227.3 218.6 28 31 0.0011 1.5 9.9 0.1 1 23 1168 1190 1168 1191 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF423-203 - 1284 2e-70 227.3 218.6 29 31 0.00015 0.21 12.5 2.2 1 23 1198 1220 1198 1221 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF423-203 - 1284 2e-70 227.3 218.6 30 31 5.4e-06 0.0075 17.0 0.4 1 24 1229 1252 1229 1252 0.98 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF423-203 - 1284 2e-70 227.3 218.6 31 31 0.0032 4.4 8.4 1.2 3 24 1261 1282 1259 1282 0.92 C2H2-type zinc finger zf-C2H2 PF00096.26 23 ZNF423-203 - 1284 3.2e-57 187.9 215.7 1 31 0.00055 0.75 10.4 0.6 1 20 67 86 67 88 0.95 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF423-203 - 1284 3.2e-57 187.9 215.7 2 31 3.4e-07 0.00047 20.5 1.2 1 23 138 160 138 160 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF423-203 - 1284 3.2e-57 187.9 215.7 3 31 0.0017 2.3 8.8 6.5 1 23 166 188 166 188 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF423-203 - 1284 3.2e-57 187.9 215.7 4 31 3e-06 0.0041 17.5 5.0 1 23 194 216 194 216 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF423-203 - 1284 3.2e-57 187.9 215.7 5 31 2.3e-07 0.00032 21.0 1.4 1 23 222 244 222 244 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF423-203 - 1284 3.2e-57 187.9 215.7 6 31 4.6e-05 0.064 13.7 0.4 1 23 263 286 263 286 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF423-203 - 1284 3.2e-57 187.9 215.7 7 31 0.0095 13 6.5 0.3 2 23 296 318 295 318 0.90 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF423-203 - 1284 3.2e-57 187.9 215.7 8 31 0.095 1.3e+02 3.3 1.2 1 12 323 334 323 345 0.85 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF423-203 - 1284 3.2e-57 187.9 215.7 9 31 0.00022 0.31 11.6 0.2 1 23 409 433 409 433 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF423-203 - 1284 3.2e-57 187.9 215.7 10 31 0.02 28 5.4 0.9 1 23 441 464 441 464 0.95 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF423-203 - 1284 3.2e-57 187.9 215.7 11 31 6.9e-06 0.0096 16.3 0.5 1 23 480 503 480 503 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF423-203 - 1284 3.2e-57 187.9 215.7 12 31 0.0013 1.8 9.2 0.3 1 23 517 540 517 540 0.95 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF423-203 - 1284 3.2e-57 187.9 215.7 13 31 0.0037 5.1 7.7 0.3 1 23 563 588 563 588 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF423-203 - 1284 3.2e-57 187.9 215.7 14 31 2.5e-05 0.035 14.6 1.5 1 23 632 654 632 654 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF423-203 - 1284 3.2e-57 187.9 215.7 15 31 0.00026 0.36 11.4 0.1 3 23 664 684 663 684 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF423-203 - 1284 3.2e-57 187.9 215.7 16 31 7e-06 0.0097 16.3 0.3 1 23 692 715 692 715 0.94 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF423-203 - 1284 3.2e-57 187.9 215.7 17 31 0.00088 1.2 9.7 0.5 1 23 720 743 720 743 0.95 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF423-203 - 1284 3.2e-57 187.9 215.7 18 31 0.00014 0.2 12.2 0.8 1 23 750 773 750 773 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF423-203 - 1284 3.2e-57 187.9 215.7 19 31 0.019 27 5.5 2.4 1 23 781 803 781 803 0.92 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF423-203 - 1284 3.2e-57 187.9 215.7 20 31 0.00018 0.24 11.9 1.4 1 23 807 830 807 830 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF423-203 - 1284 3.2e-57 187.9 215.7 21 31 0.0028 3.9 8.1 0.0 3 23 888 909 886 909 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF423-203 - 1284 3.2e-57 187.9 215.7 22 31 4.9e-05 0.068 13.7 2.4 1 23 930 952 930 952 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF423-203 - 1284 3.2e-57 187.9 215.7 23 31 5.4e-05 0.075 13.5 0.1 1 23 959 981 959 981 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF423-203 - 1284 3.2e-57 187.9 215.7 24 31 1.1 1.5e+03 -0.0 0.9 2 23 989 1010 989 1010 0.86 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF423-203 - 1284 3.2e-57 187.9 215.7 25 31 1.4 1.9e+03 -0.4 0.3 1 19 1020 1038 1020 1042 0.86 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF423-203 - 1284 3.2e-57 187.9 215.7 26 31 0.016 22 5.8 0.3 1 18 1064 1081 1064 1081 0.94 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF423-203 - 1284 3.2e-57 187.9 215.7 27 31 3.6e-06 0.0049 17.3 0.1 2 23 1121 1143 1120 1143 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF423-203 - 1284 3.2e-57 187.9 215.7 28 31 0.059 81 4.0 0.1 1 23 1168 1190 1168 1190 0.94 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF423-203 - 1284 3.2e-57 187.9 215.7 29 31 0.022 30 5.3 1.7 1 23 1198 1220 1198 1220 0.90 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF423-203 - 1284 3.2e-57 187.9 215.7 30 31 6.4e-05 0.088 13.3 0.2 1 23 1229 1252 1229 1252 0.93 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF423-203 - 1284 3.2e-57 187.9 215.7 31 31 0.00047 0.65 10.6 1.5 1 23 1259 1282 1259 1282 0.96 Zinc finger, C2H2 type zf-H2C2_2 PF13465.6 26 ZNF423-203 - 1284 4.2e-24 83.9 189.6 1 30 0.098 1.3e+02 3.2 0.1 12 24 64 76 61 78 0.85 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF423-203 - 1284 4.2e-24 83.9 189.6 2 30 0.0017 2.3 8.8 0.1 14 24 137 147 130 149 0.90 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF423-203 - 1284 4.2e-24 83.9 189.6 3 30 3.7e-05 0.052 14.0 4.2 2 26 153 177 152 177 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF423-203 - 1284 4.2e-24 83.9 189.6 4 30 2.1e-07 0.00029 21.1 2.9 4 25 183 204 180 205 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF423-203 - 1284 4.2e-24 83.9 189.6 5 30 3.1e-06 0.0043 17.4 3.3 1 25 208 232 208 233 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF423-203 - 1284 4.2e-24 83.9 189.6 6 30 0.0021 3 8.5 0.7 2 25 237 273 236 274 0.62 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF423-203 - 1284 4.2e-24 83.9 189.6 7 30 0.0067 9.2 6.9 0.1 2 25 278 305 277 306 0.83 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF423-203 - 1284 4.2e-24 83.9 189.6 8 30 0.036 50 4.6 0.6 5 25 313 333 310 334 0.75 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF423-203 - 1284 4.2e-24 83.9 189.6 9 30 0.13 1.8e+02 2.8 0.3 15 22 409 416 403 417 0.86 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF423-203 - 1284 4.2e-24 83.9 189.6 10 30 0.49 6.8e+02 1.0 0.2 4 22 427 448 425 449 0.67 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF423-203 - 1284 4.2e-24 83.9 189.6 11 30 0.0056 7.7 7.1 0.6 1 25 455 490 455 491 0.72 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF423-203 - 1284 4.2e-24 83.9 189.6 12 30 0.041 57 4.4 0.1 1 25 494 527 494 528 0.75 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF423-203 - 1284 4.2e-24 83.9 189.6 13 30 0.92 1.3e+03 0.1 0.2 15 21 563 569 555 571 0.80 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF423-203 - 1284 4.2e-24 83.9 189.6 14 30 1.2 1.6e+03 -0.2 0.4 2 10 580 589 579 598 0.86 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF423-203 - 1284 4.2e-24 83.9 189.6 15 30 0.38 5.3e+02 1.3 0.1 14 26 631 643 625 643 0.87 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF423-203 - 1284 4.2e-24 83.9 189.6 16 30 0.44 6.1e+02 1.1 0.1 16 25 663 672 646 673 0.63 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF423-203 - 1284 4.2e-24 83.9 189.6 17 30 0.0013 1.8 9.1 0.5 2 26 677 703 676 703 0.81 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF423-203 - 1284 4.2e-24 83.9 189.6 18 30 0.013 18 6.0 0.3 1 25 706 730 706 731 0.82 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF423-203 - 1284 4.2e-24 83.9 189.6 19 30 0.00096 1.3 9.5 0.1 5 21 738 756 735 760 0.86 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF423-203 - 1284 4.2e-24 83.9 189.6 20 30 0.0003 0.41 11.2 0.8 1 26 764 792 764 792 0.78 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF423-203 - 1284 4.2e-24 83.9 189.6 21 30 0.013 19 5.9 6.3 5 24 799 816 795 817 0.84 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF423-203 - 1284 4.2e-24 83.9 189.6 22 30 6.6 9.1e+03 -2.6 0.8 2 9 822 830 822 830 0.79 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF423-203 - 1284 4.2e-24 83.9 189.6 23 30 0.08 1.1e+02 3.5 0.1 14 24 929 939 901 941 0.62 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF423-203 - 1284 4.2e-24 83.9 189.6 24 30 1e-05 0.014 15.8 0.5 1 24 944 968 944 970 0.90 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF423-203 - 1284 4.2e-24 83.9 189.6 25 30 0.025 35 5.1 0.2 13 25 1062 1074 1060 1075 0.88 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF423-203 - 1284 4.2e-24 83.9 189.6 26 30 0.24 3.3e+02 2.0 0.5 15 25 1120 1130 1114 1131 0.84 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF423-203 - 1284 4.2e-24 83.9 189.6 27 30 0.026 36 5.0 3.0 2 26 1135 1179 1134 1179 0.59 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF423-203 - 1284 4.2e-24 83.9 189.6 28 30 0.0038 5.2 7.7 0.0 5 25 1186 1208 1184 1209 0.80 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF423-203 - 1284 4.2e-24 83.9 189.6 29 30 0.038 53 4.5 0.2 5 24 1216 1238 1216 1240 0.76 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF423-203 - 1284 4.2e-24 83.9 189.6 30 30 0.00036 0.49 10.9 0.2 2 24 1244 1268 1243 1269 0.86 Zinc-finger double domain zf-Di19 PF05605.12 54 ZNF423-203 - 1284 9.3e-24 83.5 184.9 1 23 0.69 9.5e+02 0.2 0.8 3 20 67 85 65 91 0.76 Drought induced 19 protein (Di19), zinc-binding zf-Di19 PF05605.12 54 ZNF423-203 - 1284 9.3e-24 83.5 184.9 2 23 0.073 1e+02 3.3 2.8 3 51 138 187 137 190 0.66 Drought induced 19 protein (Di19), zinc-binding zf-Di19 PF05605.12 54 ZNF423-203 - 1284 9.3e-24 83.5 184.9 3 23 1.4 1.9e+03 -0.7 5.7 3 50 166 214 164 218 0.71 Drought induced 19 protein (Di19), zinc-binding zf-Di19 PF05605.12 54 ZNF423-203 - 1284 9.3e-24 83.5 184.9 4 23 0.12 1.6e+02 2.7 6.1 3 51 194 243 192 251 0.62 Drought induced 19 protein (Di19), zinc-binding zf-Di19 PF05605.12 54 ZNF423-203 - 1284 9.3e-24 83.5 184.9 5 23 0.00083 1.1 9.6 1.0 2 29 262 290 261 293 0.82 Drought induced 19 protein (Di19), zinc-binding zf-Di19 PF05605.12 54 ZNF423-203 - 1284 9.3e-24 83.5 184.9 6 23 0.00014 0.19 12.0 9.7 3 50 295 343 293 347 0.79 Drought induced 19 protein (Di19), zinc-binding zf-Di19 PF05605.12 54 ZNF423-203 - 1284 9.3e-24 83.5 184.9 7 23 6.8e-07 0.00094 19.4 4.2 3 53 409 464 407 468 0.80 Drought induced 19 protein (Di19), zinc-binding zf-Di19 PF05605.12 54 ZNF423-203 - 1284 9.3e-24 83.5 184.9 8 23 8.8e-05 0.12 12.7 0.8 2 28 479 506 478 510 0.86 Drought induced 19 protein (Di19), zinc-binding zf-Di19 PF05605.12 54 ZNF423-203 - 1284 9.3e-24 83.5 184.9 9 23 0.00063 0.86 9.9 0.3 2 27 516 542 515 547 0.89 Drought induced 19 protein (Di19), zinc-binding zf-Di19 PF05605.12 54 ZNF423-203 - 1284 9.3e-24 83.5 184.9 10 23 0.00028 0.39 11.1 0.1 3 26 563 589 561 594 0.83 Drought induced 19 protein (Di19), zinc-binding zf-Di19 PF05605.12 54 ZNF423-203 - 1284 9.3e-24 83.5 184.9 11 23 9.6 1.3e+04 -3.5 0.2 3 22 632 652 630 654 0.56 Drought induced 19 protein (Di19), zinc-binding zf-Di19 PF05605.12 54 ZNF423-203 - 1284 9.3e-24 83.5 184.9 12 23 2e-07 0.00028 21.1 4.9 4 53 663 715 660 716 0.86 Drought induced 19 protein (Di19), zinc-binding zf-Di19 PF05605.12 54 ZNF423-203 - 1284 9.3e-24 83.5 184.9 13 23 0.00015 0.2 12.0 5.5 3 53 720 773 719 774 0.81 Drought induced 19 protein (Di19), zinc-binding zf-Di19 PF05605.12 54 ZNF423-203 - 1284 9.3e-24 83.5 184.9 14 23 0.0073 10 6.5 1.7 4 25 782 803 779 807 0.82 Drought induced 19 protein (Di19), zinc-binding zf-Di19 PF05605.12 54 ZNF423-203 - 1284 9.3e-24 83.5 184.9 15 23 0.003 4.2 7.7 1.9 2 27 806 832 805 837 0.82 Drought induced 19 protein (Di19), zinc-binding zf-Di19 PF05605.12 54 ZNF423-203 - 1284 9.3e-24 83.5 184.9 16 23 1.8 2.5e+03 -1.1 0.0 4 25 887 909 885 912 0.62 Drought induced 19 protein (Di19), zinc-binding zf-Di19 PF05605.12 54 ZNF423-203 - 1284 9.3e-24 83.5 184.9 17 23 1.8e-07 0.00024 21.3 2.5 3 42 930 969 928 983 0.83 Drought induced 19 protein (Di19), zinc-binding zf-Di19 PF05605.12 54 ZNF423-203 - 1284 9.3e-24 83.5 184.9 18 23 0.028 39 4.6 2.1 16 51 973 1009 970 1011 0.76 Drought induced 19 protein (Di19), zinc-binding zf-Di19 PF05605.12 54 ZNF423-203 - 1284 9.3e-24 83.5 184.9 19 23 0.014 19 5.7 3.5 4 46 989 1034 986 1044 0.74 Drought induced 19 protein (Di19), zinc-binding zf-Di19 PF05605.12 54 ZNF423-203 - 1284 9.3e-24 83.5 184.9 20 23 4.6 6.4e+03 -2.5 0.0 32 42 1064 1074 1061 1081 0.56 Drought induced 19 protein (Di19), zinc-binding zf-Di19 PF05605.12 54 ZNF423-203 - 1284 9.3e-24 83.5 184.9 21 23 0.0033 4.5 7.6 0.1 4 27 1121 1145 1118 1150 0.69 Drought induced 19 protein (Di19), zinc-binding zf-Di19 PF05605.12 54 ZNF423-203 - 1284 9.3e-24 83.5 184.9 22 23 1.2 1.6e+03 -0.5 5.5 2 50 1167 1218 1166 1221 0.74 Drought induced 19 protein (Di19), zinc-binding zf-Di19 PF05605.12 54 ZNF423-203 - 1284 9.3e-24 83.5 184.9 23 23 4e-07 0.00055 20.2 3.6 2 54 1228 1283 1227 1283 0.93 Drought induced 19 protein (Di19), zinc-binding zf-C2H2_6 PF13912.6 27 ZNF423-203 - 1284 4.2e-22 77.6 174.7 1 27 0.0024 3.2 7.8 0.1 2 23 67 88 66 89 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF423-203 - 1284 4.2e-22 77.6 174.7 2 27 0.049 68 3.6 0.4 2 11 138 147 138 151 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF423-203 - 1284 4.2e-22 77.6 174.7 3 27 0.037 52 4.0 2.5 2 12 166 176 166 177 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF423-203 - 1284 4.2e-22 77.6 174.7 4 27 0.019 26 4.9 6.2 2 26 194 218 193 219 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF423-203 - 1284 4.2e-22 77.6 174.7 5 27 7.6e-06 0.011 15.8 3.0 2 26 222 246 222 247 0.96 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF423-203 - 1284 4.2e-22 77.6 174.7 6 27 0.026 36 4.5 0.1 2 20 263 281 262 288 0.82 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF423-203 - 1284 4.2e-22 77.6 174.7 7 27 0.1 1.4e+02 2.6 1.5 2 25 323 346 322 348 0.75 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF423-203 - 1284 4.2e-22 77.6 174.7 8 27 0.00029 0.4 10.7 0.1 1 24 408 433 408 436 0.91 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF423-203 - 1284 4.2e-22 77.6 174.7 9 27 5.7e-05 0.078 13.0 0.3 2 24 441 464 440 466 0.88 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF423-203 - 1284 4.2e-22 77.6 174.7 10 27 0.25 3.5e+02 1.4 0.0 2 20 480 498 479 501 0.89 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF423-203 - 1284 4.2e-22 77.6 174.7 11 27 0.15 2e+02 2.1 0.6 2 20 517 535 516 540 0.89 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF423-203 - 1284 4.2e-22 77.6 174.7 12 27 0.73 1e+03 -0.1 0.2 1 10 562 571 562 589 0.66 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF423-203 - 1284 4.2e-22 77.6 174.7 13 27 0.052 71 3.6 0.9 2 24 632 654 632 656 0.90 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF423-203 - 1284 4.2e-22 77.6 174.7 14 27 0.0034 4.7 7.3 0.2 4 24 664 684 663 686 0.90 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF423-203 - 1284 4.2e-22 77.6 174.7 15 27 1.2e-05 0.017 15.1 0.4 1 21 691 711 691 713 0.95 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF423-203 - 1284 4.2e-22 77.6 174.7 16 27 0.17 2.3e+02 1.9 0.2 2 13 720 731 719 742 0.89 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF423-203 - 1284 4.2e-22 77.6 174.7 17 27 0.39 5.4e+02 0.8 0.3 2 24 750 773 749 775 0.81 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF423-203 - 1284 4.2e-22 77.6 174.7 18 27 0.0044 6.1 7.0 2.8 1 26 780 805 780 806 0.91 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF423-203 - 1284 4.2e-22 77.6 174.7 19 27 0.0084 12 6.1 2.3 2 25 807 830 806 830 0.88 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF423-203 - 1284 4.2e-22 77.6 174.7 20 27 0.013 17 5.5 0.0 2 21 886 905 885 910 0.80 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF423-203 - 1284 4.2e-22 77.6 174.7 21 27 3.3e-08 4.5e-05 23.3 1.2 2 26 930 954 929 955 0.95 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF423-203 - 1284 4.2e-22 77.6 174.7 22 27 6.7e-07 0.00093 19.1 0.3 1 26 958 983 958 984 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF423-203 - 1284 4.2e-22 77.6 174.7 23 27 0.0005 0.69 10.0 0.4 2 17 1064 1079 1063 1081 0.92 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF423-203 - 1284 4.2e-22 77.6 174.7 24 27 0.00016 0.22 11.6 0.1 3 25 1121 1144 1121 1145 0.86 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF423-203 - 1284 4.2e-22 77.6 174.7 25 27 0.11 1.5e+02 2.6 0.9 2 13 1198 1209 1197 1221 0.81 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF423-203 - 1284 4.2e-22 77.6 174.7 26 27 0.98 1.4e+03 -0.5 1.1 2 9 1229 1236 1228 1239 0.77 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF423-203 - 1284 4.2e-22 77.6 174.7 27 27 2 2.8e+03 -1.5 0.4 2 21 1259 1278 1258 1283 0.66 C2H2-type zinc finger zf-C2H2_jaz PF12171.8 27 ZNF423-203 - 1284 5.8e-19 67.9 166.5 1 28 0.23 3.2e+02 1.8 0.3 2 20 67 85 66 87 0.88 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF423-203 - 1284 5.8e-19 67.9 166.5 2 28 0.00028 0.38 11.1 0.2 2 21 138 157 137 158 0.91 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF423-203 - 1284 5.8e-19 67.9 166.5 3 28 0.00041 0.57 10.5 0.7 2 22 166 186 165 186 0.95 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF423-203 - 1284 5.8e-19 67.9 166.5 4 28 0.21 2.9e+02 1.9 4.1 4 24 196 216 193 217 0.91 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF423-203 - 1284 5.8e-19 67.9 166.5 5 28 4.3e-05 0.059 13.7 1.9 2 21 222 241 221 251 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF423-203 - 1284 5.8e-19 67.9 166.5 6 28 0.31 4.3e+02 1.4 0.2 2 21 263 282 262 285 0.87 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF423-203 - 1284 5.8e-19 67.9 166.5 7 28 0.0005 0.69 10.3 0.2 4 21 297 314 295 317 0.96 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF423-203 - 1284 5.8e-19 67.9 166.5 8 28 0.21 2.9e+02 1.9 0.1 1 13 322 334 322 336 0.88 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF423-203 - 1284 5.8e-19 67.9 166.5 9 28 0.0019 2.7 8.4 0.1 2 23 409 431 408 434 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF423-203 - 1284 5.8e-19 67.9 166.5 10 28 0.0012 1.6 9.1 0.4 4 22 482 500 479 500 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF423-203 - 1284 5.8e-19 67.9 166.5 11 28 0.00081 1.1 9.6 0.2 2 21 517 536 516 538 0.95 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF423-203 - 1284 5.8e-19 67.9 166.5 12 28 0.022 30 5.1 1.3 2 22 632 652 631 652 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF423-203 - 1284 5.8e-19 67.9 166.5 13 28 0.0074 10 6.5 0.1 4 21 664 681 663 682 0.95 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF423-203 - 1284 5.8e-19 67.9 166.5 14 28 7.1e-06 0.0098 16.2 0.8 2 21 692 711 691 712 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF423-203 - 1284 5.8e-19 67.9 166.5 15 28 0.15 2.1e+02 2.4 0.4 4 21 722 739 720 740 0.91 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF423-203 - 1284 5.8e-19 67.9 166.5 16 28 0.0016 2.2 8.7 0.2 2 22 750 770 749 770 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF423-203 - 1284 5.8e-19 67.9 166.5 17 28 0.006 8.3 6.8 1.7 2 24 781 803 780 805 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF423-203 - 1284 5.8e-19 67.9 166.5 18 28 0.003 4.1 7.8 2.0 1 24 806 829 806 829 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF423-203 - 1284 5.8e-19 67.9 166.5 19 28 1.6 2.2e+03 -0.9 0.0 4 20 888 904 887 905 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF423-203 - 1284 5.8e-19 67.9 166.5 20 28 1.8e-05 0.025 14.9 0.7 2 24 930 952 929 953 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF423-203 - 1284 5.8e-19 67.9 166.5 21 28 0.13 1.8e+02 2.5 0.0 2 23 959 980 958 982 0.88 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF423-203 - 1284 5.8e-19 67.9 166.5 22 28 0.55 7.6e+02 0.6 0.7 4 21 990 1007 989 1008 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF423-203 - 1284 5.8e-19 67.9 166.5 23 28 4.7 6.5e+03 -2.4 0.2 2 7 1020 1025 1019 1025 0.91 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF423-203 - 1284 5.8e-19 67.9 166.5 24 28 0.17 2.4e+02 2.2 0.3 2 18 1064 1080 1063 1081 0.89 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF423-203 - 1284 5.8e-19 67.9 166.5 25 28 0.00023 0.32 11.3 0.0 3 21 1121 1139 1119 1140 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF423-203 - 1284 5.8e-19 67.9 166.5 26 28 0.058 80 3.7 0.9 4 21 1170 1187 1167 1190 0.88 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF423-203 - 1284 5.8e-19 67.9 166.5 27 28 0.13 1.8e+02 2.6 1.0 2 16 1198 1212 1197 1220 0.81 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF423-203 - 1284 5.8e-19 67.9 166.5 28 28 0.55 7.5e+02 0.6 0.4 2 21 1229 1248 1228 1248 0.90 Zinc-finger double-stranded RNA-binding # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF423-203.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF423-203.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF423-203.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF423-203.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF423-203.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:06:06 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF423-204.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF423-204.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF423-204.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF423-204.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF423-204.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:06:06 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-C2H2_4 PF13894.6 24 ZNF423-205 - 1224 3.9e-71 229.5 218.6 1 31 0.00021 0.29 12.1 0.5 1 20 7 26 7 29 0.90 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF423-205 - 1224 3.9e-71 229.5 218.6 2 31 5.6e-05 0.078 13.9 1.0 1 23 78 100 78 101 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF423-205 - 1224 3.9e-71 229.5 218.6 3 31 0.0029 4 8.5 4.5 1 23 106 128 106 129 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF423-205 - 1224 3.9e-71 229.5 218.6 4 31 0.00013 0.18 12.7 4.6 1 23 134 156 134 157 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF423-205 - 1224 3.9e-71 229.5 218.6 5 31 2.7e-07 0.00037 21.1 1.7 1 23 162 184 162 185 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF423-205 - 1224 3.9e-71 229.5 218.6 6 31 1.5e-05 0.021 15.6 0.4 1 24 203 226 203 226 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF423-205 - 1224 3.9e-71 229.5 218.6 7 31 0.00016 0.22 12.5 0.4 2 24 236 258 235 258 0.91 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF423-205 - 1224 3.9e-71 229.5 218.6 8 31 0.00036 0.5 11.3 2.4 1 23 263 285 263 286 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF423-205 - 1224 3.9e-71 229.5 218.6 9 31 0.00042 0.57 11.2 0.2 1 24 349 373 349 373 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF423-205 - 1224 3.9e-71 229.5 218.6 10 31 0.0044 6 8.0 0.6 1 24 381 404 381 404 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF423-205 - 1224 3.9e-71 229.5 218.6 11 31 3.4e-05 0.047 14.5 0.5 1 24 420 443 420 443 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF423-205 - 1224 3.9e-71 229.5 218.6 12 31 0.001 1.4 9.9 0.4 1 24 457 480 457 480 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF423-205 - 1224 3.9e-71 229.5 218.6 13 31 0.0061 8.5 7.5 0.2 1 23 503 527 503 528 0.91 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF423-205 - 1224 3.9e-71 229.5 218.6 14 31 6.4e-05 0.089 13.7 1.1 1 23 572 594 572 595 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF423-205 - 1224 3.9e-71 229.5 218.6 15 31 1.8e-05 0.025 15.4 0.2 3 23 604 624 603 625 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF423-205 - 1224 3.9e-71 229.5 218.6 16 31 2.1e-06 0.003 18.3 0.3 1 24 632 655 632 655 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF423-205 - 1224 3.9e-71 229.5 218.6 17 31 7.3e-05 0.1 13.5 0.8 1 24 660 683 660 683 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF423-205 - 1224 3.9e-71 229.5 218.6 18 31 0.00036 0.5 11.4 1.0 1 24 690 713 690 713 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF423-205 - 1224 3.9e-71 229.5 218.6 19 31 3.6e-05 0.049 14.5 2.6 1 23 721 743 721 744 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF423-205 - 1224 3.9e-71 229.5 218.6 20 31 0.0037 5.1 8.2 1.6 1 24 747 770 747 770 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF423-205 - 1224 3.9e-71 229.5 218.6 21 31 0.0028 3.9 8.6 0.0 2 24 827 849 826 849 0.89 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF423-205 - 1224 3.9e-71 229.5 218.6 22 31 4.2e-06 0.0058 17.4 2.1 1 23 870 892 870 893 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF423-205 - 1224 3.9e-71 229.5 218.6 23 31 1.1e-05 0.015 16.1 0.2 1 23 899 921 899 922 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF423-205 - 1224 3.9e-71 229.5 218.6 24 31 0.037 50 5.1 0.8 2 23 929 950 929 951 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF423-205 - 1224 3.9e-71 229.5 218.6 25 31 0.52 7.2e+02 1.5 0.2 1 19 960 978 960 982 0.90 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF423-205 - 1224 3.9e-71 229.5 218.6 26 31 0.019 27 6.0 0.2 1 17 1004 1020 1004 1021 0.91 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF423-205 - 1224 3.9e-71 229.5 218.6 27 31 6.5e-05 0.09 13.7 0.1 2 24 1061 1083 1060 1083 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF423-205 - 1224 3.9e-71 229.5 218.6 28 31 0.001 1.4 10.0 0.1 1 23 1108 1130 1108 1131 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF423-205 - 1224 3.9e-71 229.5 218.6 29 31 0.00014 0.2 12.6 2.2 1 23 1138 1160 1138 1161 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF423-205 - 1224 3.9e-71 229.5 218.6 30 31 5.1e-06 0.0071 17.1 0.4 1 24 1169 1192 1169 1192 0.98 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF423-205 - 1224 3.9e-71 229.5 218.6 31 31 0.003 4.1 8.5 1.2 3 24 1201 1222 1199 1222 0.92 C2H2-type zinc finger zf-C2H2 PF00096.26 23 ZNF423-205 - 1224 6.8e-58 190.0 215.7 1 31 0.00052 0.71 10.4 0.6 1 20 7 26 7 28 0.95 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF423-205 - 1224 6.8e-58 190.0 215.7 2 31 3.2e-07 0.00044 20.5 1.2 1 23 78 100 78 100 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF423-205 - 1224 6.8e-58 190.0 215.7 3 31 0.0016 2.2 8.9 6.5 1 23 106 128 106 128 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF423-205 - 1224 6.8e-58 190.0 215.7 4 31 2.8e-06 0.0039 17.6 5.0 1 23 134 156 134 156 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF423-205 - 1224 6.8e-58 190.0 215.7 5 31 2.2e-07 0.00031 21.0 1.4 1 23 162 184 162 184 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF423-205 - 1224 6.8e-58 190.0 215.7 6 31 4.4e-05 0.06 13.8 0.4 1 23 203 226 203 226 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF423-205 - 1224 6.8e-58 190.0 215.7 7 31 0.009 12 6.5 0.3 2 23 236 258 235 258 0.90 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF423-205 - 1224 6.8e-58 190.0 215.7 8 31 0.09 1.2e+02 3.4 1.2 1 12 263 274 263 285 0.85 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF423-205 - 1224 6.8e-58 190.0 215.7 9 31 0.00021 0.29 11.7 0.2 1 23 349 373 349 373 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF423-205 - 1224 6.8e-58 190.0 215.7 10 31 0.019 27 5.5 0.9 1 23 381 404 381 404 0.95 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF423-205 - 1224 6.8e-58 190.0 215.7 11 31 6.6e-06 0.0091 16.4 0.5 1 23 420 443 420 443 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF423-205 - 1224 6.8e-58 190.0 215.7 12 31 0.0012 1.7 9.3 0.3 1 23 457 480 457 480 0.95 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF423-205 - 1224 6.8e-58 190.0 215.7 13 31 0.0035 4.9 7.8 0.3 1 23 503 528 503 528 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF423-205 - 1224 6.8e-58 190.0 215.7 14 31 2.4e-05 0.033 14.6 1.5 1 23 572 594 572 594 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF423-205 - 1224 6.8e-58 190.0 215.7 15 31 0.00025 0.34 11.4 0.1 3 23 604 624 603 624 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF423-205 - 1224 6.8e-58 190.0 215.7 16 31 6.6e-06 0.0092 16.4 0.3 1 23 632 655 632 655 0.94 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF423-205 - 1224 6.8e-58 190.0 215.7 17 31 0.00083 1.1 9.8 0.5 1 23 660 683 660 683 0.95 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF423-205 - 1224 6.8e-58 190.0 215.7 18 31 0.00014 0.19 12.3 0.8 1 23 690 713 690 713 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF423-205 - 1224 6.8e-58 190.0 215.7 19 31 0.018 25 5.6 2.4 1 23 721 743 721 743 0.92 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF423-205 - 1224 6.8e-58 190.0 215.7 20 31 0.00017 0.23 12.0 1.4 1 23 747 770 747 770 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF423-205 - 1224 6.8e-58 190.0 215.7 21 31 0.0027 3.7 8.2 0.0 3 23 828 849 826 849 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF423-205 - 1224 6.8e-58 190.0 215.7 22 31 4.7e-05 0.064 13.7 2.4 1 23 870 892 870 892 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF423-205 - 1224 6.8e-58 190.0 215.7 23 31 5.2e-05 0.071 13.6 0.1 1 23 899 921 899 921 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF423-205 - 1224 6.8e-58 190.0 215.7 24 31 1.1 1.4e+03 0.0 0.9 2 23 929 950 929 950 0.86 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF423-205 - 1224 6.8e-58 190.0 215.7 25 31 1.3 1.8e+03 -0.3 0.3 1 19 960 978 960 982 0.86 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF423-205 - 1224 6.8e-58 190.0 215.7 26 31 0.015 21 5.8 0.3 1 18 1004 1021 1004 1021 0.94 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF423-205 - 1224 6.8e-58 190.0 215.7 27 31 3.4e-06 0.0047 17.3 0.1 2 23 1061 1083 1060 1083 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF423-205 - 1224 6.8e-58 190.0 215.7 28 31 0.056 77 4.0 0.1 1 23 1108 1130 1108 1130 0.94 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF423-205 - 1224 6.8e-58 190.0 215.7 29 31 0.021 29 5.4 1.7 1 23 1138 1160 1138 1160 0.90 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF423-205 - 1224 6.8e-58 190.0 215.7 30 31 6e-05 0.083 13.4 0.2 1 23 1169 1192 1169 1192 0.93 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF423-205 - 1224 6.8e-58 190.0 215.7 31 31 0.00045 0.62 10.6 1.5 1 23 1199 1222 1199 1222 0.96 Zinc finger, C2H2 type zf-H2C2_2 PF13465.6 26 ZNF423-205 - 1224 2.3e-24 84.6 190.7 1 30 0.1 1.4e+02 3.1 0.1 12 24 4 16 2 18 0.85 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF423-205 - 1224 2.3e-24 84.6 190.7 2 30 0.0016 2.2 8.9 0.1 14 24 77 87 70 89 0.90 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF423-205 - 1224 2.3e-24 84.6 190.7 3 30 3.6e-05 0.049 14.1 4.2 2 26 93 117 92 117 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF423-205 - 1224 2.3e-24 84.6 190.7 4 30 2e-07 0.00027 21.2 2.9 4 25 123 144 120 145 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF423-205 - 1224 2.3e-24 84.6 190.7 5 30 2.9e-06 0.004 17.5 3.3 1 25 148 172 148 173 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF423-205 - 1224 2.3e-24 84.6 190.7 6 30 0.002 2.8 8.5 0.7 2 25 177 213 176 214 0.62 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF423-205 - 1224 2.3e-24 84.6 190.7 7 30 0.0063 8.7 7.0 0.1 2 25 218 245 217 246 0.83 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF423-205 - 1224 2.3e-24 84.6 190.7 8 30 0.034 47 4.7 0.6 5 25 253 273 250 274 0.75 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF423-205 - 1224 2.3e-24 84.6 190.7 9 30 0.13 1.7e+02 2.9 0.3 15 22 349 356 343 357 0.86 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF423-205 - 1224 2.3e-24 84.6 190.7 10 30 0.47 6.4e+02 1.1 0.2 4 22 367 388 365 389 0.67 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF423-205 - 1224 2.3e-24 84.6 190.7 11 30 0.0053 7.3 7.2 0.6 1 25 395 430 395 431 0.72 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF423-205 - 1224 2.3e-24 84.6 190.7 12 30 0.039 54 4.5 0.1 1 25 434 467 434 468 0.75 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF423-205 - 1224 2.3e-24 84.6 190.7 13 30 0.88 1.2e+03 0.2 0.2 15 21 503 509 495 511 0.80 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF423-205 - 1224 2.3e-24 84.6 190.7 14 30 1.1 1.5e+03 -0.1 0.4 2 10 520 529 519 538 0.86 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF423-205 - 1224 2.3e-24 84.6 190.7 15 30 0.36 5e+02 1.4 0.1 14 26 571 583 565 583 0.87 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF423-205 - 1224 2.3e-24 84.6 190.7 16 30 0.42 5.8e+02 1.2 0.1 16 25 603 612 586 613 0.63 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF423-205 - 1224 2.3e-24 84.6 190.7 17 30 0.0013 1.7 9.2 0.5 2 26 617 643 616 643 0.81 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF423-205 - 1224 2.3e-24 84.6 190.7 18 30 0.012 17 6.1 0.3 1 25 646 670 646 671 0.82 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF423-205 - 1224 2.3e-24 84.6 190.7 19 30 0.00092 1.3 9.6 0.1 5 21 678 696 675 700 0.86 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF423-205 - 1224 2.3e-24 84.6 190.7 20 30 0.00028 0.39 11.2 0.8 1 26 704 732 704 732 0.78 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF423-205 - 1224 2.3e-24 84.6 190.7 21 30 0.013 18 6.0 6.3 5 24 739 756 735 757 0.84 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF423-205 - 1224 2.3e-24 84.6 190.7 22 30 6.3 8.6e+03 -2.5 0.8 2 9 762 770 762 770 0.79 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF423-205 - 1224 2.3e-24 84.6 190.7 23 30 0.075 1e+02 3.6 0.1 14 24 869 879 841 881 0.62 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF423-205 - 1224 2.3e-24 84.6 190.7 24 30 9.8e-06 0.014 15.8 0.5 1 24 884 908 884 910 0.90 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF423-205 - 1224 2.3e-24 84.6 190.7 25 30 0.024 33 5.1 0.2 13 25 1002 1014 1000 1015 0.88 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF423-205 - 1224 2.3e-24 84.6 190.7 26 30 0.23 3.1e+02 2.1 0.5 15 25 1060 1070 1054 1071 0.84 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF423-205 - 1224 2.3e-24 84.6 190.7 27 30 0.029 40 4.9 3.2 2 26 1075 1119 1074 1119 0.59 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF423-205 - 1224 2.3e-24 84.6 190.7 28 30 0.0036 4.9 7.8 0.0 5 25 1126 1148 1124 1149 0.80 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF423-205 - 1224 2.3e-24 84.6 190.7 29 30 0.036 50 4.6 0.2 5 24 1156 1178 1156 1180 0.76 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF423-205 - 1224 2.3e-24 84.6 190.7 30 30 0.00034 0.47 11.0 0.2 2 24 1184 1208 1183 1209 0.86 Zinc-finger double domain zf-Di19 PF05605.12 54 ZNF423-205 - 1224 3.9e-24 84.7 185.2 1 23 0.66 9.1e+02 0.3 0.8 3 20 7 25 5 31 0.76 Drought induced 19 protein (Di19), zinc-binding zf-Di19 PF05605.12 54 ZNF423-205 - 1224 3.9e-24 84.7 185.2 2 23 0.073 1e+02 3.3 2.9 3 51 78 127 77 130 0.66 Drought induced 19 protein (Di19), zinc-binding zf-Di19 PF05605.12 54 ZNF423-205 - 1224 3.9e-24 84.7 185.2 3 23 1.5 2e+03 -0.9 5.9 3 50 106 154 104 158 0.71 Drought induced 19 protein (Di19), zinc-binding zf-Di19 PF05605.12 54 ZNF423-205 - 1224 3.9e-24 84.7 185.2 4 23 0.13 1.8e+02 2.5 6.2 3 51 134 183 132 190 0.63 Drought induced 19 protein (Di19), zinc-binding zf-Di19 PF05605.12 54 ZNF423-205 - 1224 3.9e-24 84.7 185.2 5 23 0.00078 1.1 9.6 1.0 2 29 202 230 201 233 0.82 Drought induced 19 protein (Di19), zinc-binding zf-Di19 PF05605.12 54 ZNF423-205 - 1224 3.9e-24 84.7 185.2 6 23 0.00013 0.18 12.1 9.7 3 50 235 283 233 287 0.79 Drought induced 19 protein (Di19), zinc-binding zf-Di19 PF05605.12 54 ZNF423-205 - 1224 3.9e-24 84.7 185.2 7 23 6.4e-07 0.00088 19.5 4.2 3 53 349 404 347 408 0.80 Drought induced 19 protein (Di19), zinc-binding zf-Di19 PF05605.12 54 ZNF423-205 - 1224 3.9e-24 84.7 185.2 8 23 8.3e-05 0.11 12.7 0.8 2 28 419 446 418 450 0.86 Drought induced 19 protein (Di19), zinc-binding zf-Di19 PF05605.12 54 ZNF423-205 - 1224 3.9e-24 84.7 185.2 9 23 0.00059 0.82 10.0 0.3 2 27 456 482 455 487 0.89 Drought induced 19 protein (Di19), zinc-binding zf-Di19 PF05605.12 54 ZNF423-205 - 1224 3.9e-24 84.7 185.2 10 23 0.00027 0.37 11.1 0.1 3 26 503 529 501 534 0.83 Drought induced 19 protein (Di19), zinc-binding zf-Di19 PF05605.12 54 ZNF423-205 - 1224 3.9e-24 84.7 185.2 11 23 9.1 1.3e+04 -3.4 0.2 3 22 572 592 570 594 0.56 Drought induced 19 protein (Di19), zinc-binding zf-Di19 PF05605.12 54 ZNF423-205 - 1224 3.9e-24 84.7 185.2 12 23 1.9e-07 0.00026 21.2 4.9 4 53 603 655 600 656 0.86 Drought induced 19 protein (Di19), zinc-binding zf-Di19 PF05605.12 54 ZNF423-205 - 1224 3.9e-24 84.7 185.2 13 23 0.00014 0.19 12.0 5.5 3 53 660 713 659 714 0.81 Drought induced 19 protein (Di19), zinc-binding zf-Di19 PF05605.12 54 ZNF423-205 - 1224 3.9e-24 84.7 185.2 14 23 0.007 9.6 6.6 1.8 4 25 722 743 719 747 0.82 Drought induced 19 protein (Di19), zinc-binding zf-Di19 PF05605.12 54 ZNF423-205 - 1224 3.9e-24 84.7 185.2 15 23 0.0029 4 7.8 1.9 2 27 746 772 745 777 0.82 Drought induced 19 protein (Di19), zinc-binding zf-Di19 PF05605.12 54 ZNF423-205 - 1224 3.9e-24 84.7 185.2 16 23 1.7 2.4e+03 -1.1 0.0 4 25 827 849 825 852 0.62 Drought induced 19 protein (Di19), zinc-binding zf-Di19 PF05605.12 54 ZNF423-205 - 1224 3.9e-24 84.7 185.2 17 23 1.7e-07 0.00024 21.4 2.6 3 42 870 909 868 923 0.83 Drought induced 19 protein (Di19), zinc-binding zf-Di19 PF05605.12 54 ZNF423-205 - 1224 3.9e-24 84.7 185.2 18 23 0.027 38 4.7 2.1 16 51 913 949 910 951 0.76 Drought induced 19 protein (Di19), zinc-binding zf-Di19 PF05605.12 54 ZNF423-205 - 1224 3.9e-24 84.7 185.2 19 23 0.013 18 5.7 3.5 4 46 929 974 926 984 0.74 Drought induced 19 protein (Di19), zinc-binding zf-Di19 PF05605.12 54 ZNF423-205 - 1224 3.9e-24 84.7 185.2 20 23 4.4 6.1e+03 -2.4 0.0 32 42 1004 1014 1001 1021 0.56 Drought induced 19 protein (Di19), zinc-binding zf-Di19 PF05605.12 54 ZNF423-205 - 1224 3.9e-24 84.7 185.2 21 23 0.0031 4.3 7.7 0.1 4 27 1061 1085 1058 1090 0.69 Drought induced 19 protein (Di19), zinc-binding zf-Di19 PF05605.12 54 ZNF423-205 - 1224 3.9e-24 84.7 185.2 22 23 1.1 1.5e+03 -0.4 5.6 2 50 1107 1158 1106 1161 0.74 Drought induced 19 protein (Di19), zinc-binding zf-Di19 PF05605.12 54 ZNF423-205 - 1224 3.9e-24 84.7 185.2 23 23 3.8e-07 0.00052 20.3 3.6 2 54 1168 1223 1167 1223 0.93 Drought induced 19 protein (Di19), zinc-binding zf-C2H2_6 PF13912.6 27 ZNF423-205 - 1224 2.3e-22 78.4 175.7 1 27 0.0022 3.1 7.9 0.1 2 23 7 28 6 29 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF423-205 - 1224 2.3e-22 78.4 175.7 2 27 0.047 64 3.7 0.4 2 11 78 87 78 91 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF423-205 - 1224 2.3e-22 78.4 175.7 3 27 0.036 49 4.1 2.5 2 12 106 116 106 117 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF423-205 - 1224 2.3e-22 78.4 175.7 4 27 0.018 25 5.0 6.2 2 26 134 158 133 159 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF423-205 - 1224 2.3e-22 78.4 175.7 5 27 7.2e-06 0.01 15.9 3.0 2 26 162 186 162 187 0.96 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF423-205 - 1224 2.3e-22 78.4 175.7 6 27 0.025 34 4.6 0.1 2 20 203 221 202 228 0.82 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF423-205 - 1224 2.3e-22 78.4 175.7 7 27 0.098 1.4e+02 2.7 1.5 2 25 263 286 262 288 0.75 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF423-205 - 1224 2.3e-22 78.4 175.7 8 27 0.00028 0.38 10.8 0.1 1 24 348 373 348 376 0.91 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF423-205 - 1224 2.3e-22 78.4 175.7 9 27 5.4e-05 0.074 13.1 0.3 2 24 381 404 380 406 0.88 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF423-205 - 1224 2.3e-22 78.4 175.7 10 27 0.24 3.3e+02 1.4 0.1 2 20 420 438 419 442 0.89 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF423-205 - 1224 2.3e-22 78.4 175.7 11 27 0.14 1.9e+02 2.2 0.6 2 20 457 475 456 480 0.89 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF423-205 - 1224 2.3e-22 78.4 175.7 12 27 0.7 9.6e+02 -0.0 0.2 1 10 502 511 502 529 0.66 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF423-205 - 1224 2.3e-22 78.4 175.7 13 27 0.049 67 3.6 0.9 2 24 572 594 572 596 0.90 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF423-205 - 1224 2.3e-22 78.4 175.7 14 27 0.0032 4.5 7.4 0.2 4 24 604 624 603 626 0.90 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF423-205 - 1224 2.3e-22 78.4 175.7 15 27 1.2e-05 0.016 15.2 0.4 1 21 631 651 631 653 0.95 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF423-205 - 1224 2.3e-22 78.4 175.7 16 27 0.16 2.3e+02 2.0 0.3 2 13 660 671 659 683 0.88 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF423-205 - 1224 2.3e-22 78.4 175.7 17 27 0.37 5.1e+02 0.8 0.3 2 24 690 713 689 715 0.81 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF423-205 - 1224 2.3e-22 78.4 175.7 18 27 0.0042 5.8 7.0 2.8 1 26 720 745 720 746 0.91 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF423-205 - 1224 2.3e-22 78.4 175.7 19 27 0.0078 11 6.2 2.3 2 25 747 770 746 770 0.88 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF423-205 - 1224 2.3e-22 78.4 175.7 20 27 0.012 17 5.6 0.0 2 21 826 845 825 850 0.80 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF423-205 - 1224 2.3e-22 78.4 175.7 21 27 3.1e-08 4.3e-05 23.4 1.2 2 26 870 894 869 895 0.95 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF423-205 - 1224 2.3e-22 78.4 175.7 22 27 6.4e-07 0.00088 19.2 0.3 1 26 898 923 898 924 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF423-205 - 1224 2.3e-22 78.4 175.7 23 27 0.00048 0.66 10.0 0.4 2 17 1004 1019 1003 1021 0.92 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF423-205 - 1224 2.3e-22 78.4 175.7 24 27 0.00015 0.21 11.6 0.1 3 25 1061 1084 1061 1085 0.86 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF423-205 - 1224 2.3e-22 78.4 175.7 25 27 0.1 1.4e+02 2.6 0.9 2 13 1138 1149 1137 1161 0.81 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF423-205 - 1224 2.3e-22 78.4 175.7 26 27 0.93 1.3e+03 -0.4 1.1 2 9 1169 1176 1168 1179 0.77 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF423-205 - 1224 2.3e-22 78.4 175.7 27 27 1.9 2.7e+03 -1.5 0.4 2 21 1199 1218 1198 1223 0.66 C2H2-type zinc finger zf-C2H2_jaz PF12171.8 27 ZNF423-205 - 1224 1.4e-19 69.8 166.5 1 28 0.22 3e+02 1.9 0.3 2 20 7 25 6 27 0.88 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF423-205 - 1224 1.4e-19 69.8 166.5 2 28 0.00026 0.36 11.2 0.2 2 21 78 97 77 98 0.91 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF423-205 - 1224 1.4e-19 69.8 166.5 3 28 0.00039 0.54 10.6 0.7 2 22 106 126 105 126 0.95 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF423-205 - 1224 1.4e-19 69.8 166.5 4 28 0.2 2.7e+02 2.0 4.1 4 24 136 156 133 157 0.91 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF423-205 - 1224 1.4e-19 69.8 166.5 5 28 4.1e-05 0.056 13.7 1.9 2 21 162 181 161 191 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF423-205 - 1224 1.4e-19 69.8 166.5 6 28 0.3 4.1e+02 1.4 0.2 2 21 203 222 202 225 0.87 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF423-205 - 1224 1.4e-19 69.8 166.5 7 28 0.00047 0.65 10.3 0.2 4 21 237 254 235 257 0.96 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF423-205 - 1224 1.4e-19 69.8 166.5 8 28 0.2 2.7e+02 2.0 0.1 1 13 262 274 262 276 0.88 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF423-205 - 1224 1.4e-19 69.8 166.5 9 28 0.0018 2.5 8.5 0.1 2 23 349 371 348 374 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF423-205 - 1224 1.4e-19 69.8 166.5 10 28 0.0011 1.6 9.1 0.4 4 22 422 440 419 440 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF423-205 - 1224 1.4e-19 69.8 166.5 11 28 0.00077 1.1 9.7 0.2 2 21 457 476 456 478 0.95 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF423-205 - 1224 1.4e-19 69.8 166.5 12 28 0.021 28 5.1 1.3 2 22 572 592 571 592 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF423-205 - 1224 1.4e-19 69.8 166.5 13 28 0.007 9.7 6.6 0.1 4 21 604 621 603 622 0.95 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF423-205 - 1224 1.4e-19 69.8 166.5 14 28 6.7e-06 0.0093 16.2 0.8 2 21 632 651 631 652 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF423-205 - 1224 1.4e-19 69.8 166.5 15 28 0.14 2e+02 2.4 0.4 4 21 662 679 660 680 0.91 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF423-205 - 1224 1.4e-19 69.8 166.5 16 28 0.0015 2.1 8.7 0.2 2 22 690 710 689 710 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF423-205 - 1224 1.4e-19 69.8 166.5 17 28 0.0057 7.9 6.9 1.7 2 24 721 743 720 745 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF423-205 - 1224 1.4e-19 69.8 166.5 18 28 0.0029 3.9 7.9 2.0 1 24 746 769 746 769 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF423-205 - 1224 1.4e-19 69.8 166.5 19 28 1.5 2.1e+03 -0.8 0.0 4 20 828 844 827 845 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF423-205 - 1224 1.4e-19 69.8 166.5 20 28 1.7e-05 0.024 14.9 0.7 2 24 870 892 869 893 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF423-205 - 1224 1.4e-19 69.8 166.5 21 28 0.13 1.7e+02 2.6 0.0 2 23 899 920 898 922 0.88 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF423-205 - 1224 1.4e-19 69.8 166.5 22 28 0.53 7.3e+02 0.6 0.7 4 21 930 947 929 948 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF423-205 - 1224 1.4e-19 69.8 166.5 23 28 4.5 6.2e+03 -2.3 0.2 2 7 960 965 959 965 0.91 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF423-205 - 1224 1.4e-19 69.8 166.5 24 28 0.17 2.3e+02 2.2 0.3 2 18 1004 1020 1003 1021 0.89 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF423-205 - 1224 1.4e-19 69.8 166.5 25 28 0.00022 0.31 11.4 0.0 3 21 1061 1079 1059 1080 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF423-205 - 1224 1.4e-19 69.8 166.5 26 28 0.055 76 3.8 0.9 4 21 1110 1127 1107 1130 0.88 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF423-205 - 1224 1.4e-19 69.8 166.5 27 28 0.12 1.7e+02 2.7 1.0 2 16 1138 1152 1137 1160 0.81 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF423-205 - 1224 1.4e-19 69.8 166.5 28 28 0.52 7.2e+02 0.7 0.4 2 21 1169 1188 1168 1188 0.90 Zinc-finger double-stranded RNA-binding # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF423-205.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF423-205.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF423-205.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF423-205.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF423-205.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:06:07 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-C2H2_4 PF13894.6 24 ZNF423-206 - 1292 2.5e-70 227.0 218.6 1 31 0.00022 0.3 12.0 0.5 1 20 75 94 75 97 0.90 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF423-206 - 1292 2.5e-70 227.0 218.6 2 31 6e-05 0.083 13.8 1.0 1 23 146 168 146 169 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF423-206 - 1292 2.5e-70 227.0 218.6 3 31 0.0031 4.2 8.5 4.5 1 23 174 196 174 197 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF423-206 - 1292 2.5e-70 227.0 218.6 4 31 0.00014 0.19 12.7 4.6 1 23 202 224 202 225 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF423-206 - 1292 2.5e-70 227.0 218.6 5 31 2.9e-07 0.00039 21.0 1.7 1 23 230 252 230 253 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF423-206 - 1292 2.5e-70 227.0 218.6 6 31 1.6e-05 0.022 15.5 0.4 1 24 271 294 271 294 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF423-206 - 1292 2.5e-70 227.0 218.6 7 31 0.00017 0.23 12.4 0.4 2 24 304 326 303 326 0.91 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF423-206 - 1292 2.5e-70 227.0 218.6 8 31 0.00038 0.53 11.3 2.4 1 23 331 353 331 354 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF423-206 - 1292 2.5e-70 227.0 218.6 9 31 0.00044 0.61 11.1 0.2 1 24 417 441 417 441 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF423-206 - 1292 2.5e-70 227.0 218.6 10 31 0.0046 6.4 7.9 0.6 1 24 449 472 449 472 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF423-206 - 1292 2.5e-70 227.0 218.6 11 31 3.6e-05 0.05 14.4 0.5 1 24 488 511 488 511 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF423-206 - 1292 2.5e-70 227.0 218.6 12 31 0.0011 1.5 9.9 0.4 1 24 525 548 525 548 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF423-206 - 1292 2.5e-70 227.0 218.6 13 31 0.0065 9 7.4 0.2 1 23 571 595 571 596 0.91 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF423-206 - 1292 2.5e-70 227.0 218.6 14 31 6.8e-05 0.094 13.6 1.1 1 23 640 662 640 663 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF423-206 - 1292 2.5e-70 227.0 218.6 15 31 1.9e-05 0.026 15.3 0.2 3 23 672 692 671 693 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF423-206 - 1292 2.5e-70 227.0 218.6 16 31 2.3e-06 0.0031 18.2 0.3 1 24 700 723 700 723 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF423-206 - 1292 2.5e-70 227.0 218.6 17 31 7.7e-05 0.11 13.4 0.8 1 24 728 751 728 751 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF423-206 - 1292 2.5e-70 227.0 218.6 18 31 0.00038 0.53 11.3 1.0 1 24 758 781 758 781 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF423-206 - 1292 2.5e-70 227.0 218.6 19 31 3.8e-05 0.052 14.4 2.6 1 23 789 811 789 812 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF423-206 - 1292 2.5e-70 227.0 218.6 20 31 0.0039 5.4 8.1 1.6 1 24 815 838 815 838 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF423-206 - 1292 2.5e-70 227.0 218.6 21 31 0.003 4.1 8.5 0.0 2 24 895 917 894 917 0.89 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF423-206 - 1292 2.5e-70 227.0 218.6 22 31 4.5e-06 0.0062 17.3 2.1 1 23 938 960 938 961 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF423-206 - 1292 2.5e-70 227.0 218.6 23 31 1.1e-05 0.016 16.0 0.2 1 23 967 989 967 990 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF423-206 - 1292 2.5e-70 227.0 218.6 24 31 0.039 54 5.0 0.8 2 23 997 1018 997 1019 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF423-206 - 1292 2.5e-70 227.0 218.6 25 31 0.56 7.7e+02 1.4 0.2 1 19 1028 1046 1028 1050 0.90 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF423-206 - 1292 2.5e-70 227.0 218.6 26 31 0.021 28 5.9 0.2 1 17 1072 1088 1072 1089 0.91 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF423-206 - 1292 2.5e-70 227.0 218.6 27 31 7e-05 0.096 13.6 0.1 2 24 1129 1151 1128 1151 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF423-206 - 1292 2.5e-70 227.0 218.6 28 31 0.0011 1.5 9.9 0.1 1 23 1176 1198 1176 1199 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF423-206 - 1292 2.5e-70 227.0 218.6 29 31 0.00015 0.21 12.5 2.2 1 23 1206 1228 1206 1229 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF423-206 - 1292 2.5e-70 227.0 218.6 30 31 5.4e-06 0.0075 17.0 0.4 1 24 1237 1260 1237 1260 0.98 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF423-206 - 1292 2.5e-70 227.0 218.6 31 31 0.0032 4.4 8.4 1.2 3 24 1269 1290 1267 1290 0.92 C2H2-type zinc finger zf-C2H2 PF00096.26 23 ZNF423-206 - 1292 3.9e-57 187.6 215.7 1 31 0.00055 0.76 10.4 0.6 1 20 75 94 75 96 0.95 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF423-206 - 1292 3.9e-57 187.6 215.7 2 31 3.4e-07 0.00047 20.5 1.2 1 23 146 168 146 168 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF423-206 - 1292 3.9e-57 187.6 215.7 3 31 0.0017 2.3 8.8 6.5 1 23 174 196 174 196 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF423-206 - 1292 3.9e-57 187.6 215.7 4 31 3e-06 0.0041 17.5 5.0 1 23 202 224 202 224 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF423-206 - 1292 3.9e-57 187.6 215.7 5 31 2.4e-07 0.00032 21.0 1.4 1 23 230 252 230 252 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF423-206 - 1292 3.9e-57 187.6 215.7 6 31 4.6e-05 0.064 13.7 0.4 1 23 271 294 271 294 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF423-206 - 1292 3.9e-57 187.6 215.7 7 31 0.0095 13 6.5 0.3 2 23 304 326 303 326 0.90 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF423-206 - 1292 3.9e-57 187.6 215.7 8 31 0.095 1.3e+02 3.3 1.2 1 12 331 342 331 353 0.85 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF423-206 - 1292 3.9e-57 187.6 215.7 9 31 0.00023 0.31 11.6 0.2 1 23 417 441 417 441 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF423-206 - 1292 3.9e-57 187.6 215.7 10 31 0.02 28 5.4 0.9 1 23 449 472 449 472 0.95 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF423-206 - 1292 3.9e-57 187.6 215.7 11 31 7e-06 0.0096 16.3 0.5 1 23 488 511 488 511 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF423-206 - 1292 3.9e-57 187.6 215.7 12 31 0.0013 1.8 9.2 0.3 1 23 525 548 525 548 0.95 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF423-206 - 1292 3.9e-57 187.6 215.7 13 31 0.0038 5.2 7.7 0.3 1 23 571 596 571 596 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF423-206 - 1292 3.9e-57 187.6 215.7 14 31 2.5e-05 0.035 14.6 1.5 1 23 640 662 640 662 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF423-206 - 1292 3.9e-57 187.6 215.7 15 31 0.00027 0.37 11.4 0.1 3 23 672 692 671 692 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF423-206 - 1292 3.9e-57 187.6 215.7 16 31 7.1e-06 0.0097 16.3 0.3 1 23 700 723 700 723 0.94 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF423-206 - 1292 3.9e-57 187.6 215.7 17 31 0.00088 1.2 9.7 0.5 1 23 728 751 728 751 0.95 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF423-206 - 1292 3.9e-57 187.6 215.7 18 31 0.00015 0.2 12.2 0.8 1 23 758 781 758 781 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF423-206 - 1292 3.9e-57 187.6 215.7 19 31 0.02 27 5.5 2.4 1 23 789 811 789 811 0.92 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF423-206 - 1292 3.9e-57 187.6 215.7 20 31 0.00018 0.24 11.9 1.4 1 23 815 838 815 838 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF423-206 - 1292 3.9e-57 187.6 215.7 21 31 0.0028 3.9 8.1 0.0 3 23 896 917 894 917 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF423-206 - 1292 3.9e-57 187.6 215.7 22 31 4.9e-05 0.068 13.7 2.4 1 23 938 960 938 960 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF423-206 - 1292 3.9e-57 187.6 215.7 23 31 5.5e-05 0.076 13.5 0.1 1 23 967 989 967 989 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF423-206 - 1292 3.9e-57 187.6 215.7 24 31 1.1 1.5e+03 -0.1 0.9 2 23 997 1018 997 1018 0.86 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF423-206 - 1292 3.9e-57 187.6 215.7 25 31 1.4 1.9e+03 -0.4 0.3 1 19 1028 1046 1028 1050 0.86 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF423-206 - 1292 3.9e-57 187.6 215.7 26 31 0.016 22 5.7 0.3 1 18 1072 1089 1072 1089 0.94 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF423-206 - 1292 3.9e-57 187.6 215.7 27 31 3.6e-06 0.0049 17.2 0.1 2 23 1129 1151 1128 1151 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF423-206 - 1292 3.9e-57 187.6 215.7 28 31 0.059 82 4.0 0.1 1 23 1176 1198 1176 1198 0.94 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF423-206 - 1292 3.9e-57 187.6 215.7 29 31 0.022 30 5.3 1.7 1 23 1206 1228 1206 1228 0.90 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF423-206 - 1292 3.9e-57 187.6 215.7 30 31 6.4e-05 0.088 13.3 0.2 1 23 1237 1260 1237 1260 0.93 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF423-206 - 1292 3.9e-57 187.6 215.7 31 31 0.00047 0.65 10.6 1.5 1 23 1267 1290 1267 1290 0.96 Zinc finger, C2H2 type zf-H2C2_2 PF13465.6 26 ZNF423-206 - 1292 5.5e-24 83.5 189.7 1 30 0.099 1.4e+02 3.2 0.1 12 24 72 84 69 86 0.85 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF423-206 - 1292 5.5e-24 83.5 189.7 2 30 0.0017 2.3 8.8 0.1 14 24 145 155 138 157 0.90 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF423-206 - 1292 5.5e-24 83.5 189.7 3 30 3.8e-05 0.052 14.0 4.2 2 26 161 185 160 185 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF423-206 - 1292 5.5e-24 83.5 189.7 4 30 2.1e-07 0.00029 21.1 2.9 4 25 191 212 188 213 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF423-206 - 1292 5.5e-24 83.5 189.7 5 30 3.1e-06 0.0043 17.4 3.3 1 25 216 240 216 241 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF423-206 - 1292 5.5e-24 83.5 189.7 6 30 0.0022 3 8.4 0.7 2 25 245 281 244 282 0.62 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF423-206 - 1292 5.5e-24 83.5 189.7 7 30 0.0067 9.3 6.9 0.1 2 25 286 313 285 314 0.83 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF423-206 - 1292 5.5e-24 83.5 189.7 8 30 0.036 50 4.6 0.6 5 25 321 341 318 342 0.75 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF423-206 - 1292 5.5e-24 83.5 189.7 9 30 0.13 1.8e+02 2.8 0.3 15 22 417 424 411 425 0.86 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF423-206 - 1292 5.5e-24 83.5 189.7 10 30 0.5 6.8e+02 1.0 0.2 4 22 435 456 433 457 0.67 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF423-206 - 1292 5.5e-24 83.5 189.7 11 30 0.0056 7.8 7.1 0.6 1 25 463 498 463 499 0.72 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF423-206 - 1292 5.5e-24 83.5 189.7 12 30 0.042 57 4.4 0.1 1 25 502 535 502 536 0.75 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF423-206 - 1292 5.5e-24 83.5 189.7 13 30 0.93 1.3e+03 0.1 0.2 15 21 571 577 563 579 0.80 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF423-206 - 1292 5.5e-24 83.5 189.7 14 30 1.2 1.6e+03 -0.2 0.4 2 10 588 597 587 606 0.86 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF423-206 - 1292 5.5e-24 83.5 189.7 15 30 0.39 5.3e+02 1.3 0.1 14 26 639 651 633 651 0.87 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF423-206 - 1292 5.5e-24 83.5 189.7 16 30 0.44 6.1e+02 1.1 0.1 16 25 671 680 654 681 0.63 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF423-206 - 1292 5.5e-24 83.5 189.7 17 30 0.0013 1.9 9.1 0.5 2 26 685 711 684 711 0.81 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF423-206 - 1292 5.5e-24 83.5 189.7 18 30 0.013 18 6.0 0.3 1 25 714 738 714 739 0.82 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF423-206 - 1292 5.5e-24 83.5 189.7 19 30 0.00097 1.3 9.5 0.1 5 21 746 764 743 768 0.86 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF423-206 - 1292 5.5e-24 83.5 189.7 20 30 0.0003 0.42 11.1 0.8 1 26 772 800 772 800 0.78 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF423-206 - 1292 5.5e-24 83.5 189.7 21 30 0.014 19 5.9 6.3 5 24 807 824 803 825 0.84 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF423-206 - 1292 5.5e-24 83.5 189.7 22 30 6.6 9.2e+03 -2.6 0.8 2 9 830 838 830 838 0.79 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF423-206 - 1292 5.5e-24 83.5 189.7 23 30 0.08 1.1e+02 3.5 0.1 14 24 937 947 909 949 0.62 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF423-206 - 1292 5.5e-24 83.5 189.7 24 30 1e-05 0.014 15.8 0.5 1 24 952 976 952 978 0.90 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF423-206 - 1292 5.5e-24 83.5 189.7 25 30 0.025 35 5.1 0.2 13 25 1070 1082 1068 1083 0.88 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF423-206 - 1292 5.5e-24 83.5 189.7 26 30 0.24 3.3e+02 2.0 0.5 15 25 1128 1138 1122 1139 0.84 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF423-206 - 1292 5.5e-24 83.5 189.7 27 30 0.028 39 4.9 3.1 2 26 1143 1187 1142 1187 0.59 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF423-206 - 1292 5.5e-24 83.5 189.7 28 30 0.0038 5.2 7.7 0.0 5 25 1194 1216 1192 1217 0.80 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF423-206 - 1292 5.5e-24 83.5 189.7 29 30 0.039 53 4.5 0.2 5 24 1224 1246 1224 1248 0.76 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF423-206 - 1292 5.5e-24 83.5 189.7 30 30 0.00036 0.49 10.9 0.2 2 24 1252 1276 1251 1277 0.86 Zinc-finger double domain zf-Di19 PF05605.12 54 ZNF423-206 - 1292 1.1e-23 83.3 184.9 1 23 0.7 9.6e+02 0.2 0.8 3 20 75 93 73 99 0.76 Drought induced 19 protein (Di19), zinc-binding zf-Di19 PF05605.12 54 ZNF423-206 - 1292 1.1e-23 83.3 184.9 2 23 0.074 1e+02 3.3 2.8 3 51 146 195 145 198 0.66 Drought induced 19 protein (Di19), zinc-binding zf-Di19 PF05605.12 54 ZNF423-206 - 1292 1.1e-23 83.3 184.9 3 23 1.4 1.9e+03 -0.7 5.7 3 50 174 222 172 226 0.71 Drought induced 19 protein (Di19), zinc-binding zf-Di19 PF05605.12 54 ZNF423-206 - 1292 1.1e-23 83.3 184.9 4 23 0.12 1.6e+02 2.6 6.1 3 51 202 251 200 259 0.62 Drought induced 19 protein (Di19), zinc-binding zf-Di19 PF05605.12 54 ZNF423-206 - 1292 1.1e-23 83.3 184.9 5 23 0.00083 1.1 9.5 1.0 2 29 270 298 269 301 0.82 Drought induced 19 protein (Di19), zinc-binding zf-Di19 PF05605.12 54 ZNF423-206 - 1292 1.1e-23 83.3 184.9 6 23 0.00014 0.19 12.0 9.7 3 50 303 351 301 355 0.79 Drought induced 19 protein (Di19), zinc-binding zf-Di19 PF05605.12 54 ZNF423-206 - 1292 1.1e-23 83.3 184.9 7 23 6.8e-07 0.00094 19.4 4.2 3 53 417 472 415 476 0.80 Drought induced 19 protein (Di19), zinc-binding zf-Di19 PF05605.12 54 ZNF423-206 - 1292 1.1e-23 83.3 184.9 8 23 8.8e-05 0.12 12.7 0.8 2 28 487 514 486 518 0.86 Drought induced 19 protein (Di19), zinc-binding zf-Di19 PF05605.12 54 ZNF423-206 - 1292 1.1e-23 83.3 184.9 9 23 0.00063 0.87 9.9 0.3 2 27 524 550 523 555 0.89 Drought induced 19 protein (Di19), zinc-binding zf-Di19 PF05605.12 54 ZNF423-206 - 1292 1.1e-23 83.3 184.9 10 23 0.00028 0.39 11.0 0.1 3 26 571 597 569 602 0.83 Drought induced 19 protein (Di19), zinc-binding zf-Di19 PF05605.12 54 ZNF423-206 - 1292 1.1e-23 83.3 184.9 11 23 9.7 1.3e+04 -3.5 0.2 3 22 640 660 638 662 0.56 Drought induced 19 protein (Di19), zinc-binding zf-Di19 PF05605.12 54 ZNF423-206 - 1292 1.1e-23 83.3 184.9 12 23 2e-07 0.00028 21.1 4.9 4 53 671 723 668 724 0.86 Drought induced 19 protein (Di19), zinc-binding zf-Di19 PF05605.12 54 ZNF423-206 - 1292 1.1e-23 83.3 184.9 13 23 0.00015 0.2 12.0 5.5 3 53 728 781 727 782 0.81 Drought induced 19 protein (Di19), zinc-binding zf-Di19 PF05605.12 54 ZNF423-206 - 1292 1.1e-23 83.3 184.9 14 23 0.0074 10 6.5 1.7 4 25 790 811 787 815 0.82 Drought induced 19 protein (Di19), zinc-binding zf-Di19 PF05605.12 54 ZNF423-206 - 1292 1.1e-23 83.3 184.9 15 23 0.003 4.2 7.7 1.9 2 27 814 840 813 845 0.82 Drought induced 19 protein (Di19), zinc-binding zf-Di19 PF05605.12 54 ZNF423-206 - 1292 1.1e-23 83.3 184.9 16 23 1.8 2.5e+03 -1.1 0.0 4 25 895 917 893 920 0.62 Drought induced 19 protein (Di19), zinc-binding zf-Di19 PF05605.12 54 ZNF423-206 - 1292 1.1e-23 83.3 184.9 17 23 1.8e-07 0.00025 21.3 2.5 3 42 938 977 936 991 0.83 Drought induced 19 protein (Di19), zinc-binding zf-Di19 PF05605.12 54 ZNF423-206 - 1292 1.1e-23 83.3 184.9 18 23 0.029 40 4.6 2.1 16 51 981 1017 978 1019 0.76 Drought induced 19 protein (Di19), zinc-binding zf-Di19 PF05605.12 54 ZNF423-206 - 1292 1.1e-23 83.3 184.9 19 23 0.014 19 5.6 3.5 4 46 997 1042 994 1052 0.74 Drought induced 19 protein (Di19), zinc-binding zf-Di19 PF05605.12 54 ZNF423-206 - 1292 1.1e-23 83.3 184.9 20 23 4.7 6.4e+03 -2.5 0.0 32 42 1072 1082 1069 1089 0.56 Drought induced 19 protein (Di19), zinc-binding zf-Di19 PF05605.12 54 ZNF423-206 - 1292 1.1e-23 83.3 184.9 21 23 0.0033 4.5 7.6 0.1 4 27 1129 1153 1126 1158 0.69 Drought induced 19 protein (Di19), zinc-binding zf-Di19 PF05605.12 54 ZNF423-206 - 1292 1.1e-23 83.3 184.9 22 23 1.2 1.6e+03 -0.5 5.5 2 50 1175 1226 1174 1229 0.74 Drought induced 19 protein (Di19), zinc-binding zf-Di19 PF05605.12 54 ZNF423-206 - 1292 1.1e-23 83.3 184.9 23 23 4e-07 0.00055 20.2 3.6 2 54 1236 1291 1235 1291 0.93 Drought induced 19 protein (Di19), zinc-binding zf-C2H2_6 PF13912.6 27 ZNF423-206 - 1292 5.4e-22 77.3 174.7 1 27 0.0024 3.3 7.8 0.1 2 23 75 96 74 97 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF423-206 - 1292 5.4e-22 77.3 174.7 2 27 0.049 68 3.6 0.4 2 11 146 155 146 159 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF423-206 - 1292 5.4e-22 77.3 174.7 3 27 0.038 52 4.0 2.5 2 12 174 184 174 185 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF423-206 - 1292 5.4e-22 77.3 174.7 4 27 0.019 26 4.9 6.2 2 26 202 226 201 227 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF423-206 - 1292 5.4e-22 77.3 174.7 5 27 7.7e-06 0.011 15.8 3.0 2 26 230 254 230 255 0.96 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF423-206 - 1292 5.4e-22 77.3 174.7 6 27 0.026 36 4.5 0.1 2 20 271 289 270 296 0.82 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF423-206 - 1292 5.4e-22 77.3 174.7 7 27 0.1 1.4e+02 2.6 1.5 2 25 331 354 330 356 0.75 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF423-206 - 1292 5.4e-22 77.3 174.7 8 27 0.00029 0.41 10.7 0.1 1 24 416 441 416 444 0.91 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF423-206 - 1292 5.4e-22 77.3 174.7 9 27 5.7e-05 0.079 13.0 0.3 2 24 449 472 448 474 0.88 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF423-206 - 1292 5.4e-22 77.3 174.7 10 27 0.26 3.5e+02 1.3 0.0 2 20 488 506 487 509 0.89 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF423-206 - 1292 5.4e-22 77.3 174.7 11 27 0.15 2e+02 2.1 0.6 2 20 525 543 524 548 0.89 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF423-206 - 1292 5.4e-22 77.3 174.7 12 27 0.74 1e+03 -0.1 0.2 1 10 570 579 570 597 0.66 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF423-206 - 1292 5.4e-22 77.3 174.7 13 27 0.052 72 3.6 0.9 2 24 640 662 640 664 0.90 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF423-206 - 1292 5.4e-22 77.3 174.7 14 27 0.0034 4.8 7.3 0.2 4 24 672 692 671 694 0.90 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF423-206 - 1292 5.4e-22 77.3 174.7 15 27 1.2e-05 0.017 15.1 0.4 1 21 699 719 699 721 0.95 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF423-206 - 1292 5.4e-22 77.3 174.7 16 27 0.17 2.3e+02 1.9 0.2 2 13 728 739 727 750 0.89 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF423-206 - 1292 5.4e-22 77.3 174.7 17 27 0.39 5.4e+02 0.8 0.3 2 24 758 781 757 783 0.81 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF423-206 - 1292 5.4e-22 77.3 174.7 18 27 0.0044 6.1 7.0 2.8 1 26 788 813 788 814 0.91 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF423-206 - 1292 5.4e-22 77.3 174.7 19 27 0.0085 12 6.1 2.3 2 25 815 838 814 838 0.88 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF423-206 - 1292 5.4e-22 77.3 174.7 20 27 0.013 18 5.5 0.0 2 21 894 913 893 918 0.80 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF423-206 - 1292 5.4e-22 77.3 174.7 21 27 3.3e-08 4.5e-05 23.3 1.2 2 26 938 962 937 963 0.95 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF423-206 - 1292 5.4e-22 77.3 174.7 22 27 6.8e-07 0.00093 19.1 0.3 1 26 966 991 966 992 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF423-206 - 1292 5.4e-22 77.3 174.7 23 27 0.00051 0.7 10.0 0.4 2 17 1072 1087 1071 1089 0.92 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF423-206 - 1292 5.4e-22 77.3 174.7 24 27 0.00016 0.22 11.6 0.1 3 25 1129 1152 1129 1153 0.86 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF423-206 - 1292 5.4e-22 77.3 174.7 25 27 0.11 1.5e+02 2.5 0.9 2 13 1206 1217 1205 1229 0.81 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF423-206 - 1292 5.4e-22 77.3 174.7 26 27 0.99 1.4e+03 -0.5 1.1 2 9 1237 1244 1236 1247 0.77 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF423-206 - 1292 5.4e-22 77.3 174.7 27 27 2 2.8e+03 -1.5 0.4 2 21 1267 1286 1266 1291 0.66 C2H2-type zinc finger zf-C2H2_jaz PF12171.8 27 ZNF423-206 - 1292 7e-19 67.6 166.5 1 28 0.23 3.2e+02 1.8 0.3 2 20 75 93 74 95 0.88 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF423-206 - 1292 7e-19 67.6 166.5 2 28 0.00028 0.38 11.1 0.2 2 21 146 165 145 166 0.91 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF423-206 - 1292 7e-19 67.6 166.5 3 28 0.00042 0.57 10.5 0.7 2 22 174 194 173 194 0.95 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF423-206 - 1292 7e-19 67.6 166.5 4 28 0.21 2.9e+02 1.9 4.1 4 24 204 224 201 225 0.91 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF423-206 - 1292 7e-19 67.6 166.5 5 28 4.3e-05 0.06 13.7 1.9 2 21 230 249 229 259 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF423-206 - 1292 7e-19 67.6 166.5 6 28 0.31 4.3e+02 1.4 0.2 2 21 271 290 270 293 0.87 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF423-206 - 1292 7e-19 67.6 166.5 7 28 0.0005 0.69 10.3 0.2 4 21 305 322 303 325 0.96 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF423-206 - 1292 7e-19 67.6 166.5 8 28 0.21 2.9e+02 1.9 0.1 1 13 330 342 330 344 0.88 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF423-206 - 1292 7e-19 67.6 166.5 9 28 0.0019 2.7 8.4 0.1 2 23 417 439 416 442 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF423-206 - 1292 7e-19 67.6 166.5 10 28 0.0012 1.7 9.1 0.4 4 22 490 508 487 508 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF423-206 - 1292 7e-19 67.6 166.5 11 28 0.00082 1.1 9.6 0.2 2 21 525 544 524 546 0.95 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF423-206 - 1292 7e-19 67.6 166.5 12 28 0.022 30 5.1 1.3 2 22 640 660 639 660 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF423-206 - 1292 7e-19 67.6 166.5 13 28 0.0075 10 6.5 0.1 4 21 672 689 671 690 0.95 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF423-206 - 1292 7e-19 67.6 166.5 14 28 7.1e-06 0.0099 16.2 0.8 2 21 700 719 699 720 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF423-206 - 1292 7e-19 67.6 166.5 15 28 0.15 2.1e+02 2.3 0.4 4 21 730 747 728 748 0.91 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF423-206 - 1292 7e-19 67.6 166.5 16 28 0.0016 2.2 8.7 0.2 2 22 758 778 757 778 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF423-206 - 1292 7e-19 67.6 166.5 17 28 0.0061 8.4 6.8 1.7 2 24 789 811 788 813 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF423-206 - 1292 7e-19 67.6 166.5 18 28 0.003 4.2 7.8 2.0 1 24 814 837 814 837 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF423-206 - 1292 7e-19 67.6 166.5 19 28 1.6 2.2e+03 -0.9 0.0 4 20 896 912 895 913 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF423-206 - 1292 7e-19 67.6 166.5 20 28 1.8e-05 0.025 14.9 0.7 2 24 938 960 937 961 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF423-206 - 1292 7e-19 67.6 166.5 21 28 0.13 1.8e+02 2.5 0.0 2 23 967 988 966 990 0.88 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF423-206 - 1292 7e-19 67.6 166.5 22 28 0.56 7.7e+02 0.6 0.7 4 21 998 1015 997 1016 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF423-206 - 1292 7e-19 67.6 166.5 23 28 4.8 6.6e+03 -2.4 0.2 2 7 1028 1033 1027 1033 0.91 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF423-206 - 1292 7e-19 67.6 166.5 24 28 0.18 2.4e+02 2.2 0.3 2 18 1072 1088 1071 1089 0.89 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF423-206 - 1292 7e-19 67.6 166.5 25 28 0.00023 0.32 11.3 0.0 3 21 1129 1147 1127 1148 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF423-206 - 1292 7e-19 67.6 166.5 26 28 0.059 81 3.7 0.9 4 21 1178 1195 1175 1198 0.88 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF423-206 - 1292 7e-19 67.6 166.5 27 28 0.13 1.8e+02 2.6 1.0 2 16 1206 1220 1205 1228 0.81 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF423-206 - 1292 7e-19 67.6 166.5 28 28 0.55 7.6e+02 0.6 0.4 2 21 1237 1256 1236 1256 0.90 Zinc-finger double-stranded RNA-binding # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF423-206.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF423-206.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF423-206.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF423-206.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF423-206.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:06:07 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-C2H2_4 PF13894.6 24 ZNF423-207 - 1167 1.7e-69 224.4 211.7 1 30 5.3e-05 0.074 13.9 1.0 1 23 21 43 21 44 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF423-207 - 1167 1.7e-69 224.4 211.7 2 30 0.0027 3.8 8.6 4.5 1 23 49 71 49 72 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF423-207 - 1167 1.7e-69 224.4 211.7 3 30 0.00012 0.17 12.8 4.6 1 23 77 99 77 100 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF423-207 - 1167 1.7e-69 224.4 211.7 4 30 2.5e-07 0.00035 21.2 1.7 1 23 105 127 105 128 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF423-207 - 1167 1.7e-69 224.4 211.7 5 30 1.4e-05 0.02 15.7 0.4 1 24 146 169 146 169 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF423-207 - 1167 1.7e-69 224.4 211.7 6 30 0.00015 0.2 12.6 0.4 2 24 179 201 178 201 0.91 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF423-207 - 1167 1.7e-69 224.4 211.7 7 30 0.00034 0.47 11.4 2.4 1 23 206 228 206 229 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF423-207 - 1167 1.7e-69 224.4 211.7 8 30 0.00039 0.54 11.2 0.2 1 24 292 316 292 316 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF423-207 - 1167 1.7e-69 224.4 211.7 9 30 0.0041 5.7 8.1 0.6 1 24 324 347 324 347 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF423-207 - 1167 1.7e-69 224.4 211.7 10 30 3.3e-05 0.045 14.6 0.5 1 24 363 386 363 386 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF423-207 - 1167 1.7e-69 224.4 211.7 11 30 0.00097 1.3 10.0 0.4 1 24 400 423 400 423 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF423-207 - 1167 1.7e-69 224.4 211.7 12 30 0.0058 8 7.6 0.2 1 23 446 470 446 471 0.91 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF423-207 - 1167 1.7e-69 224.4 211.7 13 30 6.1e-05 0.084 13.8 1.1 1 23 515 537 515 538 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF423-207 - 1167 1.7e-69 224.4 211.7 14 30 1.7e-05 0.023 15.5 0.2 3 23 547 567 546 568 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF423-207 - 1167 1.7e-69 224.4 211.7 15 30 2e-06 0.0028 18.4 0.3 1 24 575 598 575 598 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF423-207 - 1167 1.7e-69 224.4 211.7 16 30 6.9e-05 0.095 13.6 0.8 1 24 603 626 603 626 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF423-207 - 1167 1.7e-69 224.4 211.7 17 30 0.00034 0.47 11.4 1.0 1 24 633 656 633 656 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF423-207 - 1167 1.7e-69 224.4 211.7 18 30 3.4e-05 0.047 14.6 2.6 1 23 664 686 664 687 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF423-207 - 1167 1.7e-69 224.4 211.7 19 30 0.0035 4.9 8.3 1.6 1 24 690 713 690 713 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF423-207 - 1167 1.7e-69 224.4 211.7 20 30 0.0027 3.7 8.7 0.0 2 24 770 792 769 792 0.89 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF423-207 - 1167 1.7e-69 224.4 211.7 21 30 4e-06 0.0055 17.4 2.1 1 23 813 835 813 836 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF423-207 - 1167 1.7e-69 224.4 211.7 22 30 1e-05 0.014 16.2 0.2 1 23 842 864 842 865 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF423-207 - 1167 1.7e-69 224.4 211.7 23 30 0.035 48 5.2 0.8 2 23 872 893 872 894 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF423-207 - 1167 1.7e-69 224.4 211.7 24 30 0.5 6.8e+02 1.6 0.2 1 19 903 921 903 925 0.90 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF423-207 - 1167 1.7e-69 224.4 211.7 25 30 0.018 25 6.0 0.2 1 17 947 963 947 964 0.91 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF423-207 - 1167 1.7e-69 224.4 211.7 26 30 6.2e-05 0.085 13.7 0.1 2 24 1004 1026 1003 1026 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF423-207 - 1167 1.7e-69 224.4 211.7 27 30 0.00096 1.3 10.0 0.1 1 23 1051 1073 1051 1074 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF423-207 - 1167 1.7e-69 224.4 211.7 28 30 0.00014 0.19 12.7 2.2 1 23 1081 1103 1081 1104 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF423-207 - 1167 1.7e-69 224.4 211.7 29 30 4.9e-06 0.0067 17.2 0.4 1 24 1112 1135 1112 1135 0.98 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF423-207 - 1167 1.7e-69 224.4 211.7 30 30 0.0028 3.9 8.6 1.2 3 24 1144 1165 1142 1165 0.92 C2H2-type zinc finger zf-C2H2 PF00096.26 23 ZNF423-207 - 1167 8e-57 186.7 208.7 1 30 3.1e-07 0.00042 20.6 1.2 1 23 21 43 21 43 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF423-207 - 1167 8e-57 186.7 208.7 2 30 0.0015 2.1 9.0 6.5 1 23 49 71 49 71 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF423-207 - 1167 8e-57 186.7 208.7 3 30 2.7e-06 0.0037 17.6 5.0 1 23 77 99 77 99 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF423-207 - 1167 8e-57 186.7 208.7 4 30 2.1e-07 0.00029 21.1 1.4 1 23 105 127 105 127 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF423-207 - 1167 8e-57 186.7 208.7 5 30 4.1e-05 0.057 13.9 0.4 1 23 146 169 146 169 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF423-207 - 1167 8e-57 186.7 208.7 6 30 0.0085 12 6.6 0.3 2 23 179 201 178 201 0.90 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF423-207 - 1167 8e-57 186.7 208.7 7 30 0.085 1.2e+02 3.5 1.2 1 12 206 217 206 228 0.85 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF423-207 - 1167 8e-57 186.7 208.7 8 30 0.0002 0.28 11.7 0.2 1 23 292 316 292 316 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF423-207 - 1167 8e-57 186.7 208.7 9 30 0.018 25 5.6 0.9 1 23 324 347 324 347 0.95 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF423-207 - 1167 8e-57 186.7 208.7 10 30 6.2e-06 0.0086 16.5 0.5 1 23 363 386 363 386 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF423-207 - 1167 8e-57 186.7 208.7 11 30 0.0012 1.6 9.3 0.3 1 23 400 423 400 423 0.95 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF423-207 - 1167 8e-57 186.7 208.7 12 30 0.0033 4.6 7.9 0.3 1 23 446 471 446 471 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF423-207 - 1167 8e-57 186.7 208.7 13 30 2.3e-05 0.031 14.7 1.5 1 23 515 537 515 537 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF423-207 - 1167 8e-57 186.7 208.7 14 30 0.00024 0.33 11.5 0.1 3 23 547 567 546 567 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF423-207 - 1167 8e-57 186.7 208.7 15 30 6.3e-06 0.0087 16.5 0.3 1 23 575 598 575 598 0.94 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF423-207 - 1167 8e-57 186.7 208.7 16 30 0.00079 1.1 9.9 0.5 1 23 603 626 603 626 0.95 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF423-207 - 1167 8e-57 186.7 208.7 17 30 0.00013 0.18 12.3 0.8 1 23 633 656 633 656 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF423-207 - 1167 8e-57 186.7 208.7 18 30 0.017 24 5.6 2.4 1 23 664 686 664 686 0.92 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF423-207 - 1167 8e-57 186.7 208.7 19 30 0.00016 0.22 12.1 1.4 1 23 690 713 690 713 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF423-207 - 1167 8e-57 186.7 208.7 20 30 0.0025 3.5 8.3 0.0 3 23 771 792 769 792 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF423-207 - 1167 8e-57 186.7 208.7 21 30 4.4e-05 0.061 13.8 2.4 1 23 813 835 813 835 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF423-207 - 1167 8e-57 186.7 208.7 22 30 4.9e-05 0.068 13.7 0.1 1 23 842 864 842 864 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF423-207 - 1167 8e-57 186.7 208.7 23 30 1 1.4e+03 0.1 0.9 2 23 872 893 872 893 0.86 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF423-207 - 1167 8e-57 186.7 208.7 24 30 1.2 1.7e+03 -0.2 0.3 1 19 903 921 903 925 0.86 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF423-207 - 1167 8e-57 186.7 208.7 25 30 0.014 20 5.9 0.3 1 18 947 964 947 964 0.94 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF423-207 - 1167 8e-57 186.7 208.7 26 30 3.2e-06 0.0044 17.4 0.1 2 23 1004 1026 1003 1026 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF423-207 - 1167 8e-57 186.7 208.7 27 30 0.053 73 4.1 0.1 1 23 1051 1073 1051 1073 0.94 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF423-207 - 1167 8e-57 186.7 208.7 28 30 0.02 27 5.5 1.7 1 23 1081 1103 1081 1103 0.90 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF423-207 - 1167 8e-57 186.7 208.7 29 30 5.7e-05 0.079 13.5 0.2 1 23 1112 1135 1112 1135 0.93 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF423-207 - 1167 8e-57 186.7 208.7 30 30 0.00042 0.58 10.7 1.5 1 23 1142 1165 1142 1165 0.96 Zinc finger, C2H2 type zf-Di19 PF05605.12 54 ZNF423-207 - 1167 5.1e-26 90.7 177.6 1 22 0.076 1e+02 3.3 3.0 3 51 21 70 20 73 0.66 Drought induced 19 protein (Di19), zinc-binding zf-Di19 PF05605.12 54 ZNF423-207 - 1167 5.1e-26 90.7 177.6 2 22 1.4 2e+03 -0.8 5.9 3 50 49 97 47 102 0.71 Drought induced 19 protein (Di19), zinc-binding zf-Di19 PF05605.12 54 ZNF423-207 - 1167 5.1e-26 90.7 177.6 3 22 0.12 1.6e+02 2.6 6.2 3 51 77 126 75 133 0.63 Drought induced 19 protein (Di19), zinc-binding zf-Di19 PF05605.12 54 ZNF423-207 - 1167 5.1e-26 90.7 177.6 4 22 0.00074 1 9.7 1.0 2 29 145 173 144 176 0.82 Drought induced 19 protein (Di19), zinc-binding zf-Di19 PF05605.12 54 ZNF423-207 - 1167 5.1e-26 90.7 177.6 5 22 0.00012 0.17 12.2 9.7 3 50 178 226 176 230 0.79 Drought induced 19 protein (Di19), zinc-binding zf-Di19 PF05605.12 54 ZNF423-207 - 1167 5.1e-26 90.7 177.6 6 22 6.1e-07 0.00084 19.6 4.2 3 53 292 347 290 351 0.80 Drought induced 19 protein (Di19), zinc-binding zf-Di19 PF05605.12 54 ZNF423-207 - 1167 5.1e-26 90.7 177.6 7 22 7.9e-05 0.11 12.8 0.8 2 28 362 389 361 393 0.86 Drought induced 19 protein (Di19), zinc-binding zf-Di19 PF05605.12 54 ZNF423-207 - 1167 5.1e-26 90.7 177.6 8 22 0.00056 0.78 10.1 0.3 2 27 399 425 398 430 0.89 Drought induced 19 protein (Di19), zinc-binding zf-Di19 PF05605.12 54 ZNF423-207 - 1167 5.1e-26 90.7 177.6 9 22 0.00025 0.35 11.2 0.1 3 26 446 472 444 477 0.83 Drought induced 19 protein (Di19), zinc-binding zf-Di19 PF05605.12 54 ZNF423-207 - 1167 5.1e-26 90.7 177.6 10 22 8.7 1.2e+04 -3.3 0.2 3 22 515 535 513 537 0.56 Drought induced 19 protein (Di19), zinc-binding zf-Di19 PF05605.12 54 ZNF423-207 - 1167 5.1e-26 90.7 177.6 11 22 1.8e-07 0.00025 21.3 4.9 4 53 546 598 543 599 0.86 Drought induced 19 protein (Di19), zinc-binding zf-Di19 PF05605.12 54 ZNF423-207 - 1167 5.1e-26 90.7 177.6 12 22 0.00013 0.18 12.1 5.5 3 53 603 656 602 657 0.81 Drought induced 19 protein (Di19), zinc-binding zf-Di19 PF05605.12 54 ZNF423-207 - 1167 5.1e-26 90.7 177.6 13 22 0.0066 9.1 6.7 1.8 4 25 665 686 662 690 0.82 Drought induced 19 protein (Di19), zinc-binding zf-Di19 PF05605.12 54 ZNF423-207 - 1167 5.1e-26 90.7 177.6 14 22 0.0027 3.8 7.9 1.9 2 27 689 715 688 720 0.82 Drought induced 19 protein (Di19), zinc-binding zf-Di19 PF05605.12 54 ZNF423-207 - 1167 5.1e-26 90.7 177.6 15 22 1.6 2.2e+03 -1.0 0.0 4 25 770 792 768 795 0.62 Drought induced 19 protein (Di19), zinc-binding zf-Di19 PF05605.12 54 ZNF423-207 - 1167 5.1e-26 90.7 177.6 16 22 1.6e-07 0.00022 21.4 2.6 3 42 813 852 811 866 0.83 Drought induced 19 protein (Di19), zinc-binding zf-Di19 PF05605.12 54 ZNF423-207 - 1167 5.1e-26 90.7 177.6 17 22 0.026 36 4.8 2.1 16 51 856 892 853 894 0.76 Drought induced 19 protein (Di19), zinc-binding zf-Di19 PF05605.12 54 ZNF423-207 - 1167 5.1e-26 90.7 177.6 18 22 0.012 17 5.8 3.5 4 46 872 917 869 927 0.74 Drought induced 19 protein (Di19), zinc-binding zf-Di19 PF05605.12 54 ZNF423-207 - 1167 5.1e-26 90.7 177.6 19 22 4.2 5.8e+03 -2.3 0.0 32 42 947 957 944 964 0.56 Drought induced 19 protein (Di19), zinc-binding zf-Di19 PF05605.12 54 ZNF423-207 - 1167 5.1e-26 90.7 177.6 20 22 0.0029 4 7.8 0.1 4 27 1004 1028 1001 1033 0.69 Drought induced 19 protein (Di19), zinc-binding zf-Di19 PF05605.12 54 ZNF423-207 - 1167 5.1e-26 90.7 177.6 21 22 1 1.4e+03 -0.4 5.6 2 50 1050 1101 1049 1104 0.74 Drought induced 19 protein (Di19), zinc-binding zf-Di19 PF05605.12 54 ZNF423-207 - 1167 5.1e-26 90.7 177.6 22 22 3.6e-07 0.00049 20.3 3.6 2 54 1111 1166 1110 1166 0.93 Drought induced 19 protein (Di19), zinc-binding zf-H2C2_2 PF13465.6 26 ZNF423-207 - 1167 2.5e-23 81.4 191.2 1 29 0.0015 2.1 8.9 0.1 14 24 20 30 13 32 0.90 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF423-207 - 1167 2.5e-23 81.4 191.2 2 29 3.4e-05 0.046 14.2 4.2 2 26 36 60 35 60 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF423-207 - 1167 2.5e-23 81.4 191.2 3 29 1.9e-07 0.00026 21.3 2.9 4 25 66 87 63 88 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF423-207 - 1167 2.5e-23 81.4 191.2 4 29 2.8e-06 0.0038 17.6 3.3 1 25 91 115 91 116 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF423-207 - 1167 2.5e-23 81.4 191.2 5 29 0.0019 2.6 8.6 0.7 2 25 120 156 119 157 0.62 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF423-207 - 1167 2.5e-23 81.4 191.2 6 29 0.006 8.3 7.0 0.1 2 25 161 188 160 189 0.83 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF423-207 - 1167 2.5e-23 81.4 191.2 7 29 0.032 45 4.7 0.6 5 25 196 216 193 217 0.75 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF423-207 - 1167 2.5e-23 81.4 191.2 8 29 0.12 1.7e+02 2.9 0.3 15 22 292 299 286 300 0.86 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF423-207 - 1167 2.5e-23 81.4 191.2 9 29 0.44 6.1e+02 1.1 0.2 4 22 310 331 308 332 0.67 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF423-207 - 1167 2.5e-23 81.4 191.2 10 29 0.005 6.9 7.3 0.6 1 25 338 373 338 374 0.72 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF423-207 - 1167 2.5e-23 81.4 191.2 11 29 0.037 51 4.5 0.1 1 25 377 410 377 411 0.75 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF423-207 - 1167 2.5e-23 81.4 191.2 12 29 0.83 1.1e+03 0.3 0.2 15 21 446 452 438 454 0.80 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF423-207 - 1167 2.5e-23 81.4 191.2 13 29 1.1 1.5e+03 -0.1 0.4 2 10 463 472 462 481 0.86 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF423-207 - 1167 2.5e-23 81.4 191.2 14 29 0.35 4.8e+02 1.5 0.1 14 26 514 526 508 526 0.87 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF423-207 - 1167 2.5e-23 81.4 191.2 15 29 0.4 5.5e+02 1.3 0.1 16 25 546 555 529 556 0.63 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF423-207 - 1167 2.5e-23 81.4 191.2 16 29 0.0012 1.7 9.3 0.5 2 26 560 586 559 586 0.81 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF423-207 - 1167 2.5e-23 81.4 191.2 17 29 0.011 16 6.1 0.3 1 25 589 613 589 614 0.82 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF423-207 - 1167 2.5e-23 81.4 191.2 18 29 0.00087 1.2 9.7 0.1 5 21 621 639 618 643 0.86 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF423-207 - 1167 2.5e-23 81.4 191.2 19 29 0.00027 0.37 11.3 0.8 1 26 647 675 647 675 0.78 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF423-207 - 1167 2.5e-23 81.4 191.2 20 29 0.012 17 6.1 6.3 5 24 682 699 678 700 0.84 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF423-207 - 1167 2.5e-23 81.4 191.2 21 29 6 8.2e+03 -2.4 0.8 2 9 705 713 705 713 0.80 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF423-207 - 1167 2.5e-23 81.4 191.2 22 29 0.071 99 3.6 0.1 14 24 812 822 784 824 0.62 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF423-207 - 1167 2.5e-23 81.4 191.2 23 29 9.3e-06 0.013 15.9 0.5 1 24 827 851 827 853 0.90 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF423-207 - 1167 2.5e-23 81.4 191.2 24 29 0.023 31 5.2 0.2 13 25 945 957 943 958 0.88 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF423-207 - 1167 2.5e-23 81.4 191.2 25 29 0.21 2.9e+02 2.1 0.5 15 25 1003 1013 997 1014 0.84 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF423-207 - 1167 2.5e-23 81.4 191.2 26 29 0.027 38 4.9 3.3 2 26 1018 1062 1017 1062 0.59 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF423-207 - 1167 2.5e-23 81.4 191.2 27 29 0.0034 4.7 7.8 0.0 5 25 1069 1091 1067 1092 0.80 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF423-207 - 1167 2.5e-23 81.4 191.2 28 29 0.035 48 4.6 0.2 5 24 1099 1121 1099 1123 0.76 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF423-207 - 1167 2.5e-23 81.4 191.2 29 29 0.00032 0.44 11.1 0.2 2 24 1127 1151 1126 1152 0.86 Zinc-finger double domain zf-C2H2_6 PF13912.6 27 ZNF423-207 - 1167 2.3e-21 75.3 171.1 1 26 0.044 61 3.8 0.4 2 11 21 30 21 34 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF423-207 - 1167 2.3e-21 75.3 171.1 2 26 0.034 47 4.1 2.5 2 12 49 59 49 60 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF423-207 - 1167 2.3e-21 75.3 171.1 3 26 0.017 24 5.1 6.2 2 26 77 101 76 102 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF423-207 - 1167 2.3e-21 75.3 171.1 4 26 6.9e-06 0.0095 15.9 3.0 2 26 105 129 105 130 0.96 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF423-207 - 1167 2.3e-21 75.3 171.1 5 26 0.024 33 4.6 0.1 2 20 146 164 145 171 0.82 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF423-207 - 1167 2.3e-21 75.3 171.1 6 26 0.093 1.3e+02 2.7 1.5 2 25 206 229 205 231 0.76 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF423-207 - 1167 2.3e-21 75.3 171.1 7 26 0.00026 0.36 10.9 0.1 1 24 291 316 291 319 0.91 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF423-207 - 1167 2.3e-21 75.3 171.1 8 26 5.1e-05 0.071 13.1 0.3 2 24 324 347 323 349 0.88 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF423-207 - 1167 2.3e-21 75.3 171.1 9 26 0.23 3.2e+02 1.5 0.1 2 20 363 381 362 385 0.89 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF423-207 - 1167 2.3e-21 75.3 171.1 10 26 0.13 1.8e+02 2.3 0.6 2 20 400 418 399 423 0.89 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF423-207 - 1167 2.3e-21 75.3 171.1 11 26 0.66 9.1e+02 0.0 0.2 1 10 445 454 445 472 0.66 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF423-207 - 1167 2.3e-21 75.3 171.1 12 26 0.046 64 3.7 0.9 2 24 515 537 515 539 0.90 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF423-207 - 1167 2.3e-21 75.3 171.1 13 26 0.0031 4.3 7.5 0.2 4 24 547 567 546 569 0.90 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF423-207 - 1167 2.3e-21 75.3 171.1 14 26 1.1e-05 0.015 15.3 0.4 1 21 574 594 574 596 0.95 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF423-207 - 1167 2.3e-21 75.3 171.1 15 26 0.16 2.1e+02 2.0 0.3 2 13 603 614 602 626 0.88 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF423-207 - 1167 2.3e-21 75.3 171.1 16 26 0.35 4.8e+02 0.9 0.3 2 24 633 656 632 658 0.81 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF423-207 - 1167 2.3e-21 75.3 171.1 17 26 0.004 5.5 7.1 2.8 1 26 663 688 663 689 0.91 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF423-207 - 1167 2.3e-21 75.3 171.1 18 26 0.0074 10 6.2 2.3 2 25 690 713 689 713 0.88 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF423-207 - 1167 2.3e-21 75.3 171.1 19 26 0.011 16 5.7 0.0 2 21 769 788 768 793 0.80 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF423-207 - 1167 2.3e-21 75.3 171.1 20 26 2.9e-08 4e-05 23.5 1.2 2 26 813 837 812 838 0.95 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF423-207 - 1167 2.3e-21 75.3 171.1 21 26 6e-07 0.00083 19.3 0.3 1 26 841 866 841 867 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF423-207 - 1167 2.3e-21 75.3 171.1 22 26 0.00045 0.62 10.1 0.4 2 17 947 962 946 964 0.92 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF423-207 - 1167 2.3e-21 75.3 171.1 23 26 0.00014 0.2 11.7 0.1 3 25 1004 1027 1004 1028 0.86 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF423-207 - 1167 2.3e-21 75.3 171.1 24 26 0.096 1.3e+02 2.7 0.9 2 13 1081 1092 1080 1104 0.81 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF423-207 - 1167 2.3e-21 75.3 171.1 25 26 0.89 1.2e+03 -0.4 1.1 2 9 1112 1119 1111 1122 0.77 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF423-207 - 1167 2.3e-21 75.3 171.1 26 26 1.6 2.2e+03 -1.2 0.5 2 24 1142 1165 1141 1167 0.70 C2H2-type zinc finger zf-C2H2_jaz PF12171.8 27 ZNF423-207 - 1167 7.5e-21 73.9 160.6 1 27 0.00025 0.34 11.2 0.2 2 21 21 40 20 41 0.91 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF423-207 - 1167 7.5e-21 73.9 160.6 2 27 0.00037 0.51 10.7 0.7 2 22 49 69 48 69 0.95 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF423-207 - 1167 7.5e-21 73.9 160.6 3 27 0.19 2.6e+02 2.1 4.1 4 24 79 99 76 100 0.91 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF423-207 - 1167 7.5e-21 73.9 160.6 4 27 3.9e-05 0.053 13.8 1.9 2 21 105 124 104 134 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF423-207 - 1167 7.5e-21 73.9 160.6 5 27 0.28 3.9e+02 1.5 0.2 2 21 146 165 145 168 0.87 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF423-207 - 1167 7.5e-21 73.9 160.6 6 27 0.00045 0.62 10.4 0.2 4 21 180 197 178 200 0.96 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF423-207 - 1167 7.5e-21 73.9 160.6 7 27 0.19 2.6e+02 2.1 0.1 1 13 205 217 205 219 0.88 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF423-207 - 1167 7.5e-21 73.9 160.6 8 27 0.0017 2.4 8.5 0.1 2 23 292 314 291 317 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF423-207 - 1167 7.5e-21 73.9 160.6 9 27 0.0011 1.5 9.2 0.4 4 22 365 383 362 383 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF423-207 - 1167 7.5e-21 73.9 160.6 10 27 0.00073 1 9.7 0.2 2 21 400 419 399 421 0.95 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF423-207 - 1167 7.5e-21 73.9 160.6 11 27 0.019 27 5.2 1.3 2 22 515 535 514 535 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF423-207 - 1167 7.5e-21 73.9 160.6 12 27 0.0067 9.2 6.7 0.1 4 21 547 564 546 565 0.95 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF423-207 - 1167 7.5e-21 73.9 160.6 13 27 6.4e-06 0.0088 16.3 0.8 2 21 575 594 574 595 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF423-207 - 1167 7.5e-21 73.9 160.6 14 27 0.14 1.9e+02 2.5 0.4 4 21 605 622 603 623 0.91 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF423-207 - 1167 7.5e-21 73.9 160.6 15 27 0.0014 2 8.8 0.2 2 22 633 653 632 653 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF423-207 - 1167 7.5e-21 73.9 160.6 16 27 0.0054 7.5 7.0 1.7 2 24 664 686 663 688 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF423-207 - 1167 7.5e-21 73.9 160.6 17 27 0.0027 3.7 7.9 2.0 1 24 689 712 689 712 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF423-207 - 1167 7.5e-21 73.9 160.6 18 27 1.5 2e+03 -0.8 0.0 4 20 771 787 770 788 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF423-207 - 1167 7.5e-21 73.9 160.6 19 27 1.6e-05 0.022 15.0 0.7 2 24 813 835 812 836 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF423-207 - 1167 7.5e-21 73.9 160.6 20 27 0.12 1.7e+02 2.7 0.0 2 23 842 863 841 865 0.88 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF423-207 - 1167 7.5e-21 73.9 160.6 21 27 0.5 6.9e+02 0.7 0.7 4 21 873 890 872 891 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF423-207 - 1167 7.5e-21 73.9 160.6 22 27 4.3 5.9e+03 -2.3 0.2 2 7 903 908 902 908 0.91 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF423-207 - 1167 7.5e-21 73.9 160.6 23 27 0.16 2.2e+02 2.3 0.3 2 18 947 963 946 964 0.89 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF423-207 - 1167 7.5e-21 73.9 160.6 24 27 0.00021 0.29 11.5 0.0 3 21 1004 1022 1002 1023 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF423-207 - 1167 7.5e-21 73.9 160.6 25 27 0.052 72 3.8 0.9 4 21 1053 1070 1050 1073 0.88 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF423-207 - 1167 7.5e-21 73.9 160.6 26 27 0.11 1.6e+02 2.7 1.0 2 16 1081 1095 1080 1103 0.81 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF423-207 - 1167 7.5e-21 73.9 160.6 27 27 0.49 6.8e+02 0.7 0.4 2 21 1112 1131 1111 1131 0.90 Zinc-finger double-stranded RNA-binding zf-C2H2_2 PF12756.7 101 ZNF423-207 - 1167 7.3e-08 32.7 161.5 1 20 0.84 1.2e+03 -0.1 5.2 45 72 40 70 24 80 0.73 C2H2 type zinc-finger (2 copies) zf-C2H2_2 PF12756.7 101 ZNF423-207 - 1167 7.3e-08 32.7 161.5 2 20 0.00014 0.19 12.1 3.5 50 87 104 141 96 147 0.67 C2H2 type zinc-finger (2 copies) zf-C2H2_2 PF12756.7 101 ZNF423-207 - 1167 7.3e-08 32.7 161.5 3 20 0.0022 3 8.2 2.0 38 75 133 169 129 179 0.76 C2H2 type zinc-finger (2 copies) zf-C2H2_2 PF12756.7 101 ZNF423-207 - 1167 7.3e-08 32.7 161.5 4 20 0.00025 0.35 11.2 10.8 2 73 148 228 147 237 0.78 C2H2 type zinc-finger (2 copies) zf-C2H2_2 PF12756.7 101 ZNF423-207 - 1167 7.3e-08 32.7 161.5 5 20 0.077 1.1e+02 3.3 0.0 51 72 292 314 287 320 0.87 C2H2 type zinc-finger (2 copies) zf-C2H2_2 PF12756.7 101 ZNF423-207 - 1167 7.3e-08 32.7 161.5 6 20 0.12 1.6e+02 2.6 1.3 48 76 321 348 314 356 0.78 C2H2 type zinc-finger (2 copies) zf-C2H2_2 PF12756.7 101 ZNF423-207 - 1167 7.3e-08 32.7 161.5 7 20 0.0008 1.1 9.6 0.2 48 79 361 390 354 401 0.80 C2H2 type zinc-finger (2 copies) zf-C2H2_2 PF12756.7 101 ZNF423-207 - 1167 7.3e-08 32.7 161.5 8 20 0.038 52 4.3 3.3 38 85 434 481 402 488 0.66 C2H2 type zinc-finger (2 copies) zf-C2H2_2 PF12756.7 101 ZNF423-207 - 1167 7.3e-08 32.7 161.5 9 20 0.069 96 3.4 0.1 50 71 514 535 499 541 0.81 C2H2 type zinc-finger (2 copies) zf-C2H2_2 PF12756.7 101 ZNF423-207 - 1167 7.3e-08 32.7 161.5 10 20 0.0076 10 6.5 0.5 48 71 542 565 535 571 0.82 C2H2 type zinc-finger (2 copies) zf-C2H2_2 PF12756.7 101 ZNF423-207 - 1167 7.3e-08 32.7 161.5 11 20 0.015 21 5.5 11.7 2 72 577 654 576 664 0.75 C2H2 type zinc-finger (2 copies) zf-C2H2_2 PF12756.7 101 ZNF423-207 - 1167 7.3e-08 32.7 161.5 12 20 0.011 15 6.0 1.5 50 73 663 686 655 690 0.84 C2H2 type zinc-finger (2 copies) zf-C2H2_2 PF12756.7 101 ZNF423-207 - 1167 7.3e-08 32.7 161.5 13 20 0.0043 6 7.3 1.8 49 82 688 720 685 727 0.83 C2H2 type zinc-finger (2 copies) zf-C2H2_2 PF12756.7 101 ZNF423-207 - 1167 7.3e-08 32.7 161.5 14 20 0.0024 3.4 8.1 0.4 45 73 807 835 802 842 0.87 C2H2 type zinc-finger (2 copies) zf-C2H2_2 PF12756.7 101 ZNF423-207 - 1167 7.3e-08 32.7 161.5 15 20 0.19 2.7e+02 2.0 0.1 50 69 841 860 838 868 0.85 C2H2 type zinc-finger (2 copies) zf-C2H2_2 PF12756.7 101 ZNF423-207 - 1167 7.3e-08 32.7 161.5 16 20 2.9 4e+03 -1.8 5.8 9 69 880 921 872 964 0.46 C2H2 type zinc-finger (2 copies) zf-C2H2_2 PF12756.7 101 ZNF423-207 - 1167 7.3e-08 32.7 161.5 17 20 0.00029 0.4 11.0 0.0 50 82 1002 1033 997 1043 0.81 C2H2 type zinc-finger (2 copies) zf-C2H2_2 PF12756.7 101 ZNF423-207 - 1167 7.3e-08 32.7 161.5 18 20 0.037 51 4.3 0.9 50 72 1050 1072 1045 1078 0.84 C2H2 type zinc-finger (2 copies) zf-C2H2_2 PF12756.7 101 ZNF423-207 - 1167 7.3e-08 32.7 161.5 19 20 0.082 1.1e+02 3.2 1.6 50 73 1080 1103 1072 1109 0.79 C2H2 type zinc-finger (2 copies) zf-C2H2_2 PF12756.7 101 ZNF423-207 - 1167 7.3e-08 32.7 161.5 20 20 0.056 78 3.7 0.4 45 70 1106 1131 1100 1152 0.81 C2H2 type zinc-finger (2 copies) # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF423-207.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF423-207.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF423-207.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF423-207.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF423-207.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:06:08 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF423-208.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF423-208.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF423-208.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF423-208.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF423-208.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:06:08 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZNF425-201 - 752 2.1e-104 337.7 149.0 1 21 0.13 1.4e+02 3.2 0.6 11 24 186 199 176 199 0.86 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF425-201 - 752 2.1e-104 337.7 149.0 2 21 1.2 1.3e+03 0.1 0.2 2 11 205 214 204 223 0.84 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF425-201 - 752 2.1e-104 337.7 149.0 3 21 0.0036 3.8 8.1 1.1 11 24 242 255 234 256 0.89 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF425-201 - 752 2.1e-104 337.7 149.0 4 21 5.7e-10 6e-07 29.6 0.4 1 25 260 284 260 285 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF425-201 - 752 2.1e-104 337.7 149.0 5 21 4e-07 0.00042 20.6 2.5 1 25 288 312 288 313 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF425-201 - 752 2.1e-104 337.7 149.0 6 21 1.6e-09 1.7e-06 28.2 1.8 2 24 317 339 316 340 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF425-201 - 752 2.1e-104 337.7 149.0 7 21 2.6e-07 0.00027 21.2 1.3 3 25 346 368 344 369 0.90 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF425-201 - 752 2.1e-104 337.7 149.0 8 21 4.3e-07 0.00046 20.5 0.8 1 24 372 395 372 397 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF425-201 - 752 2.1e-104 337.7 149.0 9 21 1.5e-11 1.6e-08 34.6 0.8 2 24 401 423 400 424 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF425-201 - 752 2.1e-104 337.7 149.0 10 21 5.6e-06 0.0059 17.0 0.3 2 24 429 451 428 452 0.85 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF425-201 - 752 2.1e-104 337.7 149.0 11 21 8.5e-08 9e-05 22.7 0.5 2 26 457 481 456 481 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF425-201 - 752 2.1e-104 337.7 149.0 12 21 4.9e-05 0.051 14.0 2.6 5 25 488 508 485 509 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF425-201 - 752 2.1e-104 337.7 149.0 13 21 8e-08 8.4e-05 22.8 0.9 2 25 513 536 512 537 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF425-201 - 752 2.1e-104 337.7 149.0 14 21 3.4e-10 3.6e-07 30.3 1.2 1 25 540 564 540 564 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF425-201 - 752 2.1e-104 337.7 149.0 15 21 7.5e-07 0.00079 19.7 2.7 3 26 570 593 568 593 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF425-201 - 752 2.1e-104 337.7 149.0 16 21 5.5e-11 5.8e-08 32.8 0.9 2 24 597 619 596 620 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF425-201 - 752 2.1e-104 337.7 149.0 17 21 1.9e-07 0.0002 21.7 0.2 1 25 624 648 624 649 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF425-201 - 752 2.1e-104 337.7 149.0 18 21 2.7e-11 2.9e-08 33.8 0.6 2 24 653 675 652 675 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF425-201 - 752 2.1e-104 337.7 149.0 19 21 1.6e-10 1.7e-07 31.3 0.4 1 25 680 704 680 705 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF425-201 - 752 2.1e-104 337.7 149.0 20 21 1.6e-06 0.0017 18.7 0.9 1 25 708 732 708 733 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF425-201 - 752 2.1e-104 337.7 149.0 21 21 0.08 85 3.8 0.0 1 14 736 749 736 749 0.93 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZNF425-201 - 752 1.4e-77 252.1 149.7 1 19 0.00017 0.18 12.4 2.4 1 23 190 212 190 212 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF425-201 - 752 1.4e-77 252.1 149.7 2 19 0.00019 0.2 12.2 0.4 1 23 246 268 246 268 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF425-201 - 752 1.4e-77 252.1 149.7 3 19 4.4e-08 4.7e-05 23.6 2.8 1 23 274 296 274 296 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF425-201 - 752 1.4e-77 252.1 149.7 4 19 1.4e-06 0.0014 18.9 1.9 1 23 302 324 302 324 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF425-201 - 752 1.4e-77 252.1 149.7 5 19 0.00015 0.16 12.5 3.2 1 23 330 352 330 352 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF425-201 - 752 1.4e-77 252.1 149.7 6 19 3.9e-09 4.1e-06 26.9 2.4 1 23 358 380 358 380 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF425-201 - 752 1.4e-77 252.1 149.7 7 19 7.4e-06 0.0078 16.6 0.2 1 23 386 408 386 408 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF425-201 - 752 1.4e-77 252.1 149.7 8 19 6.1e-06 0.0064 16.9 0.9 1 23 414 436 414 436 0.93 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF425-201 - 752 1.4e-77 252.1 149.7 9 19 0.00072 0.76 10.4 0.4 1 23 442 464 442 464 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF425-201 - 752 1.4e-77 252.1 149.7 10 19 4.1e-06 0.0043 17.4 1.5 1 23 470 492 470 492 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF425-201 - 752 1.4e-77 252.1 149.7 11 19 1.1e-07 0.00011 22.4 1.1 1 23 498 520 498 520 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF425-201 - 752 1.4e-77 252.1 149.7 12 19 9.7e-08 0.0001 22.5 2.2 1 23 526 548 526 548 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF425-201 - 752 1.4e-77 252.1 149.7 13 19 0.00012 0.13 12.8 1.3 1 23 554 576 554 576 0.94 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF425-201 - 752 1.4e-77 252.1 149.7 14 19 5.7e-08 6e-05 23.3 1.2 1 23 582 604 582 604 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF425-201 - 752 1.4e-77 252.1 149.7 15 19 2.2e-07 0.00024 21.4 0.6 1 23 610 632 610 632 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF425-201 - 752 1.4e-77 252.1 149.7 16 19 1.9e-08 2e-05 24.8 0.9 1 23 638 660 638 660 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF425-201 - 752 1.4e-77 252.1 149.7 17 19 7.2e-06 0.0076 16.7 2.1 1 23 666 688 666 688 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF425-201 - 752 1.4e-77 252.1 149.7 18 19 9.5e-06 0.01 16.3 1.2 1 23 694 716 694 716 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF425-201 - 752 1.4e-77 252.1 149.7 19 19 6.4e-07 0.00067 20.0 0.1 1 23 722 744 722 744 0.97 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZNF425-201 - 752 1.1e-49 162.8 147.4 1 19 0.00014 0.15 13.0 2.1 1 23 190 212 190 213 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF425-201 - 752 1.1e-49 162.8 147.4 2 19 0.0012 1.2 10.1 0.7 1 23 246 268 246 269 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF425-201 - 752 1.1e-49 162.8 147.4 3 19 6.1e-05 0.064 14.1 0.3 1 20 274 293 274 293 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF425-201 - 752 1.1e-49 162.8 147.4 4 19 0.0002 0.21 12.5 2.7 1 23 302 324 302 325 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF425-201 - 752 1.1e-49 162.8 147.4 5 19 6.3e-05 0.067 14.1 2.8 1 23 330 352 330 353 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF425-201 - 752 1.1e-49 162.8 147.4 6 19 2.1e-07 0.00022 21.8 2.1 1 23 358 380 358 381 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF425-201 - 752 1.1e-49 162.8 147.4 7 19 0.0023 2.4 9.2 0.2 1 23 386 408 386 409 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF425-201 - 752 1.1e-49 162.8 147.4 8 19 0.00024 0.26 12.2 0.9 1 19 414 432 414 436 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF425-201 - 752 1.1e-49 162.8 147.4 9 19 0.00081 0.85 10.6 0.6 1 23 442 464 442 465 0.86 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF425-201 - 752 1.1e-49 162.8 147.4 10 19 0.00052 0.54 11.2 1.3 1 23 470 492 470 493 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF425-201 - 752 1.1e-49 162.8 147.4 11 19 9.9e-06 0.01 16.6 1.1 1 23 498 520 498 521 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF425-201 - 752 1.1e-49 162.8 147.4 12 19 0.0012 1.3 10.1 1.8 1 23 526 548 526 549 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF425-201 - 752 1.1e-49 162.8 147.4 13 19 0.00011 0.12 13.3 1.6 1 23 554 576 554 577 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF425-201 - 752 1.1e-49 162.8 147.4 14 19 0.00052 0.55 11.2 1.1 1 23 582 604 582 605 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF425-201 - 752 1.1e-49 162.8 147.4 15 19 3.1e-06 0.0032 18.2 0.7 1 23 610 632 610 633 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF425-201 - 752 1.1e-49 162.8 147.4 16 19 3e-05 0.031 15.1 0.8 1 23 638 660 638 661 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF425-201 - 752 1.1e-49 162.8 147.4 17 19 6.9e-05 0.073 13.9 2.2 1 23 666 688 666 689 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF425-201 - 752 1.1e-49 162.8 147.4 18 19 7.7e-05 0.081 13.8 1.7 1 20 694 713 694 716 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF425-201 - 752 1.1e-49 162.8 147.4 19 19 9.2e-06 0.0097 16.7 0.1 1 23 722 744 722 745 0.94 C2H2-type zinc finger zf-C2H2_jaz PF12171.8 27 ZNF425-201 - 752 9.7e-23 79.9 65.4 1 18 0.0032 3.4 8.1 2.5 2 24 190 212 189 213 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF425-201 - 752 9.7e-23 79.9 65.4 2 18 1.6 1.7e+03 -0.5 0.2 2 11 246 255 245 265 0.80 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF425-201 - 752 9.7e-23 79.9 65.4 3 18 0.00086 0.91 9.9 0.0 2 21 274 293 273 293 0.89 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF425-201 - 752 9.7e-23 79.9 65.4 4 18 3.2 3.4e+03 -1.5 0.3 2 9 330 337 329 350 0.77 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF425-201 - 752 9.7e-23 79.9 65.4 5 18 4.9e-05 0.052 13.9 0.1 2 24 358 380 357 381 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF425-201 - 752 9.7e-23 79.9 65.4 6 18 0.092 98 3.4 0.0 2 22 386 406 385 406 0.91 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF425-201 - 752 9.7e-23 79.9 65.4 7 18 0.0016 1.6 9.1 0.1 2 20 414 432 413 432 0.89 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF425-201 - 752 9.7e-23 79.9 65.4 8 18 0.015 16 5.9 0.0 2 22 442 462 441 462 0.90 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF425-201 - 752 9.7e-23 79.9 65.4 9 18 0.86 9.1e+02 0.3 0.2 2 13 470 481 469 487 0.83 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF425-201 - 752 9.7e-23 79.9 65.4 10 18 0.00053 0.55 10.6 0.2 2 22 498 518 497 518 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF425-201 - 752 9.7e-23 79.9 65.4 11 18 0.048 50 4.3 0.0 2 21 526 545 525 546 0.90 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF425-201 - 752 9.7e-23 79.9 65.4 12 18 0.0047 4.9 7.6 0.3 2 21 554 573 553 574 0.82 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF425-201 - 752 9.7e-23 79.9 65.4 13 18 4.4e-05 0.046 14.0 0.1 2 22 582 602 581 602 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF425-201 - 752 9.7e-23 79.9 65.4 14 18 0.023 24 5.3 0.2 4 21 612 629 609 632 0.82 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF425-201 - 752 9.7e-23 79.9 65.4 15 18 0.0027 2.8 8.3 0.0 2 22 638 658 637 658 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF425-201 - 752 9.7e-23 79.9 65.4 16 18 0.2 2.1e+02 2.3 0.4 2 11 666 675 665 675 0.84 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF425-201 - 752 9.7e-23 79.9 65.4 17 18 0.0093 9.8 6.6 0.0 2 21 694 713 693 713 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF425-201 - 752 9.7e-23 79.9 65.4 18 18 0.056 60 4.1 0.0 2 21 722 741 721 742 0.90 Zinc-finger double-stranded RNA-binding KRAB PF01352.27 42 ZNF425-201 - 752 5.6e-16 57.9 2.0 1 2 1.3e-18 1.4e-15 56.6 1.3 2 42 9 49 8 49 0.98 KRAB box KRAB PF01352.27 42 ZNF425-201 - 752 5.6e-16 57.9 2.0 2 2 4.3 4.5e+03 -2.6 0.0 15 25 71 81 70 82 0.87 KRAB box zf-C2H2_6 PF13912.6 27 ZNF425-201 - 752 8.7e-14 51.1 140.2 1 19 0.0048 5.1 7.2 4.1 2 26 190 214 189 215 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF425-201 - 752 8.7e-14 51.1 140.2 2 19 0.027 28 4.8 1.4 1 11 245 255 245 255 0.90 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF425-201 - 752 8.7e-14 51.1 140.2 3 19 6.9e-05 0.073 13.1 1.0 2 25 274 297 274 299 0.88 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF425-201 - 752 8.7e-14 51.1 140.2 4 19 0.0019 2 8.5 3.1 2 25 302 325 302 327 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF425-201 - 752 8.7e-14 51.1 140.2 5 19 0.45 4.8e+02 0.9 0.7 2 12 330 340 330 354 0.84 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF425-201 - 752 8.7e-14 51.1 140.2 6 19 2e-05 0.021 14.8 2.1 2 26 358 382 358 383 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF425-201 - 752 8.7e-14 51.1 140.2 7 19 5.1 5.4e+03 -2.4 0.7 2 11 386 395 386 395 0.83 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF425-201 - 752 8.7e-14 51.1 140.2 8 19 0.0021 2.3 8.3 0.4 2 12 414 424 414 432 0.87 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF425-201 - 752 8.7e-14 51.1 140.2 9 19 0.028 29 4.8 0.2 2 24 442 464 442 467 0.78 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF425-201 - 752 8.7e-14 51.1 140.2 10 19 0.0093 9.8 6.3 0.8 2 12 470 480 470 492 0.92 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF425-201 - 752 8.7e-14 51.1 140.2 11 19 0.00047 0.5 10.4 1.2 2 24 498 520 498 523 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF425-201 - 752 8.7e-14 51.1 140.2 12 19 0.0032 3.4 7.8 1.2 2 24 526 548 526 551 0.87 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF425-201 - 752 8.7e-14 51.1 140.2 13 19 0.0016 1.7 8.7 0.4 2 12 554 564 554 579 0.85 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF425-201 - 752 8.7e-14 51.1 140.2 14 19 0.0051 5.4 7.1 1.7 2 25 582 605 582 607 0.91 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF425-201 - 752 8.7e-14 51.1 140.2 15 19 0.0028 2.9 8.0 0.8 2 24 610 632 610 635 0.77 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF425-201 - 752 8.7e-14 51.1 140.2 16 19 0.003 3.2 7.9 0.5 3 24 639 660 638 663 0.84 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF425-201 - 752 8.7e-14 51.1 140.2 17 19 0.041 44 4.2 1.2 2 11 666 675 666 689 0.92 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF425-201 - 752 8.7e-14 51.1 140.2 18 19 0.022 23 5.1 0.2 2 11 694 703 694 713 0.90 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF425-201 - 752 8.7e-14 51.1 140.2 19 19 7.3e-05 0.077 13.0 0.2 2 21 722 741 722 747 0.86 C2H2-type zinc finger zf-met PF12874.7 25 ZNF425-201 - 752 3.9e-10 39.8 80.3 1 17 0.029 31 5.1 0.7 1 23 190 212 190 213 0.86 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF425-201 - 752 3.9e-10 39.8 80.3 2 17 3 3.2e+03 -1.2 0.1 1 10 246 255 246 261 0.90 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF425-201 - 752 3.9e-10 39.8 80.3 3 17 0.00049 0.51 10.8 0.3 3 20 276 293 274 294 0.93 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF425-201 - 752 3.9e-10 39.8 80.3 4 17 0.00025 0.27 11.7 0.3 1 21 358 378 358 380 0.93 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF425-201 - 752 3.9e-10 39.8 80.3 5 17 3.2 3.4e+03 -1.3 0.1 1 12 386 397 386 406 0.76 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF425-201 - 752 3.9e-10 39.8 80.3 6 17 0.045 48 4.5 0.2 1 18 414 431 414 436 0.77 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF425-201 - 752 3.9e-10 39.8 80.3 7 17 1.2 1.2e+03 0.0 0.1 1 20 442 461 442 462 0.86 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF425-201 - 752 3.9e-10 39.8 80.3 8 17 0.091 95 3.6 0.2 3 21 472 490 470 492 0.88 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF425-201 - 752 3.9e-10 39.8 80.3 9 17 0.0079 8.3 7.0 0.4 3 21 500 518 498 521 0.91 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF425-201 - 752 3.9e-10 39.8 80.3 10 17 0.036 38 4.8 0.1 1 20 526 545 526 546 0.92 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF425-201 - 752 3.9e-10 39.8 80.3 11 17 0.034 36 4.9 0.4 1 19 554 572 554 574 0.84 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF425-201 - 752 3.9e-10 39.8 80.3 12 17 8.1e-05 0.086 13.3 0.3 1 21 582 602 582 602 0.93 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF425-201 - 752 3.9e-10 39.8 80.3 13 17 0.0046 4.9 7.7 0.1 1 20 610 629 610 630 0.96 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF425-201 - 752 3.9e-10 39.8 80.3 14 17 0.079 83 3.8 0.2 1 13 638 650 638 658 0.82 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF425-201 - 752 3.9e-10 39.8 80.3 15 17 0.067 71 4.0 1.0 1 20 666 685 666 688 0.92 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF425-201 - 752 3.9e-10 39.8 80.3 16 17 0.91 9.6e+02 0.4 0.2 1 20 694 713 694 714 0.89 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF425-201 - 752 3.9e-10 39.8 80.3 17 17 0.0034 3.6 8.1 0.1 1 20 722 741 722 744 0.93 Zinc-finger of C2H2 type # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF425-201.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF425-201.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF425-201.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF425-201.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF425-201.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:06:09 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF425-202.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF425-202.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF425-202.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF425-202.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF425-202.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:06:09 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF425-203.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF425-203.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF425-203.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF425-203.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF425-203.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:06:10 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF425-204.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF425-204.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF425-204.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF425-204.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF425-204.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:06:10 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZNF426-201 - 554 1.1e-75 247.0 103.0 1 15 2 1.8e+03 -0.4 0.3 17 25 148 156 138 157 0.78 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF426-201 - 554 1.1e-75 247.0 103.0 2 15 2 1.8e+03 -0.4 0.1 2 25 161 184 161 185 0.74 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF426-201 - 554 1.1e-75 247.0 103.0 3 15 2.9e-05 0.026 15.0 0.4 7 25 216 234 215 235 0.87 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF426-201 - 554 1.1e-75 247.0 103.0 4 15 0.00019 0.17 12.4 0.1 2 16 239 253 238 253 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF426-201 - 554 1.1e-75 247.0 103.0 5 15 0.0015 1.3 9.5 2.2 12 24 277 289 275 291 0.89 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF426-201 - 554 1.1e-75 247.0 103.0 6 15 1.1e-12 1e-09 38.4 1.0 2 25 295 318 294 319 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF426-201 - 554 1.1e-75 247.0 103.0 7 15 2.3e-09 2.1e-06 27.9 0.8 5 25 326 346 322 347 0.89 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF426-201 - 554 1.1e-75 247.0 103.0 8 15 8.4e-11 7.6e-08 32.5 0.2 1 26 350 375 350 375 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF426-201 - 554 1.1e-75 247.0 103.0 9 15 1.9e-10 1.7e-07 31.4 0.1 2 25 379 402 378 402 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF426-201 - 554 1.1e-75 247.0 103.0 10 15 7.9e-07 0.00071 19.9 0.8 1 25 406 430 406 431 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF426-201 - 554 1.1e-75 247.0 103.0 11 15 3e-10 2.7e-07 30.7 1.0 2 25 435 458 435 459 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF426-201 - 554 1.1e-75 247.0 103.0 12 15 3e-12 2.7e-09 37.0 2.8 1 26 462 487 462 487 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF426-201 - 554 1.1e-75 247.0 103.0 13 15 9.7e-11 8.7e-08 32.3 3.2 3 25 492 514 490 515 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF426-201 - 554 1.1e-75 247.0 103.0 14 15 3.3e-08 3e-05 24.3 3.7 2 26 519 543 518 543 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF426-201 - 554 1.1e-75 247.0 103.0 15 15 2.5 2.3e+03 -0.7 0.5 1 9 546 554 546 554 0.88 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZNF426-201 - 554 1.2e-61 201.8 96.0 1 12 0.00036 0.32 11.5 3.1 2 22 147 167 146 167 0.93 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF426-201 - 554 1.2e-61 201.8 96.0 2 12 1.4e-09 1.3e-06 28.5 1.8 1 23 224 246 224 246 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF426-201 - 554 1.2e-61 201.8 96.0 3 12 4e-08 3.6e-05 24.0 0.8 1 23 280 302 280 302 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF426-201 - 554 1.2e-61 201.8 96.0 4 12 5.3e-07 0.00048 20.4 0.6 1 23 308 330 308 330 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF426-201 - 554 1.2e-61 201.8 96.0 5 12 1e-07 9.3e-05 22.7 0.4 1 23 336 358 336 358 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF426-201 - 554 1.2e-61 201.8 96.0 6 12 1.4e-07 0.00013 22.2 0.7 1 23 364 386 364 386 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF426-201 - 554 1.2e-61 201.8 96.0 7 12 1.8e-07 0.00016 21.9 0.1 1 23 392 414 392 414 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF426-201 - 554 1.2e-61 201.8 96.0 8 12 7.9e-08 7.1e-05 23.0 3.5 2 23 421 442 420 442 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF426-201 - 554 1.2e-61 201.8 96.0 9 12 4.2e-09 3.7e-06 27.1 2.4 1 23 448 470 448 470 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF426-201 - 554 1.2e-61 201.8 96.0 10 12 9.4e-08 8.5e-05 22.8 2.5 1 23 476 498 476 498 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF426-201 - 554 1.2e-61 201.8 96.0 11 12 2.1e-05 0.019 15.4 2.8 1 23 504 526 504 526 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF426-201 - 554 1.2e-61 201.8 96.0 12 12 4.7e-07 0.00043 20.6 2.0 1 23 532 554 532 554 0.98 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZNF426-201 - 554 7.3e-44 144.6 93.4 1 12 0.00027 0.24 12.3 3.6 3 23 148 168 146 169 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF426-201 - 554 7.3e-44 144.6 93.4 2 12 1.3e-07 0.00012 22.6 1.3 1 23 224 246 224 247 0.97 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF426-201 - 554 7.3e-44 144.6 93.4 3 12 6.2e-06 0.0056 17.4 0.5 1 23 280 302 280 303 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF426-201 - 554 7.3e-44 144.6 93.4 4 12 0.00087 0.78 10.7 0.6 1 19 308 326 308 331 0.88 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF426-201 - 554 7.3e-44 144.6 93.4 5 12 4.8e-06 0.0043 17.8 0.5 1 23 336 358 336 359 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF426-201 - 554 7.3e-44 144.6 93.4 6 12 2.5e-07 0.00023 21.8 0.6 1 23 364 386 364 387 0.97 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF426-201 - 554 7.3e-44 144.6 93.4 7 12 2.9e-05 0.026 15.3 0.2 1 23 392 414 392 415 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF426-201 - 554 7.3e-44 144.6 93.4 8 12 1.7e-06 0.0015 19.2 3.1 2 23 421 442 420 443 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF426-201 - 554 7.3e-44 144.6 93.4 9 12 9e-06 0.0081 16.9 1.4 1 23 448 470 448 471 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF426-201 - 554 7.3e-44 144.6 93.4 10 12 2.7e-05 0.024 15.4 2.3 1 23 476 498 476 499 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF426-201 - 554 7.3e-44 144.6 93.4 11 12 5.5e-06 0.005 17.6 2.7 1 23 504 526 504 527 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF426-201 - 554 7.3e-44 144.6 93.4 12 12 2.2e-05 0.019 15.7 1.6 1 23 532 554 532 554 0.95 C2H2-type zinc finger KRAB PF01352.27 42 ZNF426-201 - 554 2.5e-24 84.7 0.8 1 1 4.7e-27 4.2e-24 83.9 0.8 1 42 41 82 41 82 0.98 KRAB box zf-C2H2_6 PF13912.6 27 ZNF426-201 - 554 4.4e-22 77.6 84.5 1 12 0.29 2.6e+02 1.8 0.5 4 12 148 156 147 157 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF426-201 - 554 4.4e-22 77.6 84.5 2 12 0.00049 0.44 10.6 1.6 2 24 224 246 223 249 0.90 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF426-201 - 554 4.4e-22 77.6 84.5 3 12 0.00075 0.67 10.0 0.6 2 24 280 302 280 305 0.86 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF426-201 - 554 4.4e-22 77.6 84.5 4 12 0.00021 0.18 11.8 0.9 2 13 308 319 308 331 0.87 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF426-201 - 554 4.4e-22 77.6 84.5 5 12 5.5e-06 0.005 16.8 1.3 2 24 336 358 336 360 0.95 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF426-201 - 554 4.4e-22 77.6 84.5 6 12 5.1e-05 0.046 13.7 0.5 2 24 364 386 364 389 0.83 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF426-201 - 554 4.4e-22 77.6 84.5 7 12 0.00016 0.15 12.1 0.2 2 25 392 415 392 417 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF426-201 - 554 4.4e-22 77.6 84.5 8 12 2.6e-06 0.0024 17.8 0.9 3 26 421 444 421 445 0.95 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF426-201 - 554 4.4e-22 77.6 84.5 9 12 0.00023 0.21 11.6 1.2 2 24 448 470 448 473 0.88 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF426-201 - 554 4.4e-22 77.6 84.5 10 12 0.0017 1.5 8.9 1.2 2 12 476 486 476 487 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF426-201 - 554 4.4e-22 77.6 84.5 11 12 0.0033 3 8.0 2.8 2 12 504 514 504 528 0.87 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF426-201 - 554 4.4e-22 77.6 84.5 12 12 0.0044 3.9 7.6 0.5 2 12 532 542 532 551 0.80 C2H2-type zinc finger zf-C2H2_jaz PF12171.8 27 ZNF426-201 - 554 1.1e-16 60.6 67.9 1 12 0.55 4.9e+02 1.2 1.4 4 23 148 167 147 169 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF426-201 - 554 1.1e-16 60.6 67.9 2 12 6.5e-08 5.9e-05 23.2 1.8 2 24 224 246 223 247 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF426-201 - 554 1.1e-16 60.6 67.9 3 12 0.14 1.2e+02 3.1 0.2 2 12 280 290 279 302 0.72 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF426-201 - 554 1.1e-16 60.6 67.9 4 12 0.0019 1.7 9.0 0.6 2 20 308 326 307 330 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF426-201 - 554 1.1e-16 60.6 67.9 5 12 0.25 2.2e+02 2.3 0.1 2 12 336 346 335 359 0.72 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF426-201 - 554 1.1e-16 60.6 67.9 6 12 1.9e-05 0.017 15.4 0.1 2 24 364 386 363 386 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF426-201 - 554 1.1e-16 60.6 67.9 7 12 0.0033 3 8.2 0.0 2 24 392 414 391 414 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF426-201 - 554 1.1e-16 60.6 67.9 8 12 0.036 32 4.9 0.6 4 24 422 442 421 443 0.88 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF426-201 - 554 1.1e-16 60.6 67.9 9 12 0.023 21 5.6 0.3 2 22 448 468 447 468 0.86 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF426-201 - 554 1.1e-16 60.6 67.9 10 12 9.6e-05 0.086 13.2 1.6 2 24 476 498 475 498 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF426-201 - 554 1.1e-16 60.6 67.9 11 12 0.0058 5.2 7.5 2.0 2 24 504 526 503 526 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF426-201 - 554 1.1e-16 60.6 67.9 12 12 0.0033 2.9 8.3 0.1 2 21 532 551 531 552 0.94 Zinc-finger double-stranded RNA-binding # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF426-201.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF426-201.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF426-201.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF426-201.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF426-201.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:06:10 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZNF426-202 - 554 1.1e-75 247.0 103.0 1 15 2 1.8e+03 -0.4 0.3 17 25 148 156 138 157 0.78 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF426-202 - 554 1.1e-75 247.0 103.0 2 15 2 1.8e+03 -0.4 0.1 2 25 161 184 161 185 0.74 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF426-202 - 554 1.1e-75 247.0 103.0 3 15 2.9e-05 0.026 15.0 0.4 7 25 216 234 215 235 0.87 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF426-202 - 554 1.1e-75 247.0 103.0 4 15 0.00019 0.17 12.4 0.1 2 16 239 253 238 253 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF426-202 - 554 1.1e-75 247.0 103.0 5 15 0.0015 1.3 9.5 2.2 12 24 277 289 275 291 0.89 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF426-202 - 554 1.1e-75 247.0 103.0 6 15 1.1e-12 1e-09 38.4 1.0 2 25 295 318 294 319 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF426-202 - 554 1.1e-75 247.0 103.0 7 15 2.3e-09 2.1e-06 27.9 0.8 5 25 326 346 322 347 0.89 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF426-202 - 554 1.1e-75 247.0 103.0 8 15 8.4e-11 7.6e-08 32.5 0.2 1 26 350 375 350 375 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF426-202 - 554 1.1e-75 247.0 103.0 9 15 1.9e-10 1.7e-07 31.4 0.1 2 25 379 402 378 402 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF426-202 - 554 1.1e-75 247.0 103.0 10 15 7.9e-07 0.00071 19.9 0.8 1 25 406 430 406 431 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF426-202 - 554 1.1e-75 247.0 103.0 11 15 3e-10 2.7e-07 30.7 1.0 2 25 435 458 435 459 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF426-202 - 554 1.1e-75 247.0 103.0 12 15 3e-12 2.7e-09 37.0 2.8 1 26 462 487 462 487 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF426-202 - 554 1.1e-75 247.0 103.0 13 15 9.7e-11 8.7e-08 32.3 3.2 3 25 492 514 490 515 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF426-202 - 554 1.1e-75 247.0 103.0 14 15 3.3e-08 3e-05 24.3 3.7 2 26 519 543 518 543 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF426-202 - 554 1.1e-75 247.0 103.0 15 15 2.5 2.3e+03 -0.7 0.5 1 9 546 554 546 554 0.88 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZNF426-202 - 554 1.2e-61 201.8 96.0 1 12 0.00036 0.32 11.5 3.1 2 22 147 167 146 167 0.93 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF426-202 - 554 1.2e-61 201.8 96.0 2 12 1.4e-09 1.3e-06 28.5 1.8 1 23 224 246 224 246 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF426-202 - 554 1.2e-61 201.8 96.0 3 12 4e-08 3.6e-05 24.0 0.8 1 23 280 302 280 302 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF426-202 - 554 1.2e-61 201.8 96.0 4 12 5.3e-07 0.00048 20.4 0.6 1 23 308 330 308 330 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF426-202 - 554 1.2e-61 201.8 96.0 5 12 1e-07 9.3e-05 22.7 0.4 1 23 336 358 336 358 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF426-202 - 554 1.2e-61 201.8 96.0 6 12 1.4e-07 0.00013 22.2 0.7 1 23 364 386 364 386 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF426-202 - 554 1.2e-61 201.8 96.0 7 12 1.8e-07 0.00016 21.9 0.1 1 23 392 414 392 414 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF426-202 - 554 1.2e-61 201.8 96.0 8 12 7.9e-08 7.1e-05 23.0 3.5 2 23 421 442 420 442 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF426-202 - 554 1.2e-61 201.8 96.0 9 12 4.2e-09 3.7e-06 27.1 2.4 1 23 448 470 448 470 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF426-202 - 554 1.2e-61 201.8 96.0 10 12 9.4e-08 8.5e-05 22.8 2.5 1 23 476 498 476 498 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF426-202 - 554 1.2e-61 201.8 96.0 11 12 2.1e-05 0.019 15.4 2.8 1 23 504 526 504 526 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF426-202 - 554 1.2e-61 201.8 96.0 12 12 4.7e-07 0.00043 20.6 2.0 1 23 532 554 532 554 0.98 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZNF426-202 - 554 7.3e-44 144.6 93.4 1 12 0.00027 0.24 12.3 3.6 3 23 148 168 146 169 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF426-202 - 554 7.3e-44 144.6 93.4 2 12 1.3e-07 0.00012 22.6 1.3 1 23 224 246 224 247 0.97 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF426-202 - 554 7.3e-44 144.6 93.4 3 12 6.2e-06 0.0056 17.4 0.5 1 23 280 302 280 303 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF426-202 - 554 7.3e-44 144.6 93.4 4 12 0.00087 0.78 10.7 0.6 1 19 308 326 308 331 0.88 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF426-202 - 554 7.3e-44 144.6 93.4 5 12 4.8e-06 0.0043 17.8 0.5 1 23 336 358 336 359 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF426-202 - 554 7.3e-44 144.6 93.4 6 12 2.5e-07 0.00023 21.8 0.6 1 23 364 386 364 387 0.97 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF426-202 - 554 7.3e-44 144.6 93.4 7 12 2.9e-05 0.026 15.3 0.2 1 23 392 414 392 415 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF426-202 - 554 7.3e-44 144.6 93.4 8 12 1.7e-06 0.0015 19.2 3.1 2 23 421 442 420 443 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF426-202 - 554 7.3e-44 144.6 93.4 9 12 9e-06 0.0081 16.9 1.4 1 23 448 470 448 471 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF426-202 - 554 7.3e-44 144.6 93.4 10 12 2.7e-05 0.024 15.4 2.3 1 23 476 498 476 499 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF426-202 - 554 7.3e-44 144.6 93.4 11 12 5.5e-06 0.005 17.6 2.7 1 23 504 526 504 527 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF426-202 - 554 7.3e-44 144.6 93.4 12 12 2.2e-05 0.019 15.7 1.6 1 23 532 554 532 554 0.95 C2H2-type zinc finger KRAB PF01352.27 42 ZNF426-202 - 554 2.5e-24 84.7 0.8 1 1 4.7e-27 4.2e-24 83.9 0.8 1 42 41 82 41 82 0.98 KRAB box zf-C2H2_6 PF13912.6 27 ZNF426-202 - 554 4.4e-22 77.6 84.5 1 12 0.29 2.6e+02 1.8 0.5 4 12 148 156 147 157 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF426-202 - 554 4.4e-22 77.6 84.5 2 12 0.00049 0.44 10.6 1.6 2 24 224 246 223 249 0.90 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF426-202 - 554 4.4e-22 77.6 84.5 3 12 0.00075 0.67 10.0 0.6 2 24 280 302 280 305 0.86 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF426-202 - 554 4.4e-22 77.6 84.5 4 12 0.00021 0.18 11.8 0.9 2 13 308 319 308 331 0.87 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF426-202 - 554 4.4e-22 77.6 84.5 5 12 5.5e-06 0.005 16.8 1.3 2 24 336 358 336 360 0.95 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF426-202 - 554 4.4e-22 77.6 84.5 6 12 5.1e-05 0.046 13.7 0.5 2 24 364 386 364 389 0.83 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF426-202 - 554 4.4e-22 77.6 84.5 7 12 0.00016 0.15 12.1 0.2 2 25 392 415 392 417 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF426-202 - 554 4.4e-22 77.6 84.5 8 12 2.6e-06 0.0024 17.8 0.9 3 26 421 444 421 445 0.95 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF426-202 - 554 4.4e-22 77.6 84.5 9 12 0.00023 0.21 11.6 1.2 2 24 448 470 448 473 0.88 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF426-202 - 554 4.4e-22 77.6 84.5 10 12 0.0017 1.5 8.9 1.2 2 12 476 486 476 487 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF426-202 - 554 4.4e-22 77.6 84.5 11 12 0.0033 3 8.0 2.8 2 12 504 514 504 528 0.87 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF426-202 - 554 4.4e-22 77.6 84.5 12 12 0.0044 3.9 7.6 0.5 2 12 532 542 532 551 0.80 C2H2-type zinc finger zf-C2H2_jaz PF12171.8 27 ZNF426-202 - 554 1.1e-16 60.6 67.9 1 12 0.55 4.9e+02 1.2 1.4 4 23 148 167 147 169 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF426-202 - 554 1.1e-16 60.6 67.9 2 12 6.5e-08 5.9e-05 23.2 1.8 2 24 224 246 223 247 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF426-202 - 554 1.1e-16 60.6 67.9 3 12 0.14 1.2e+02 3.1 0.2 2 12 280 290 279 302 0.72 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF426-202 - 554 1.1e-16 60.6 67.9 4 12 0.0019 1.7 9.0 0.6 2 20 308 326 307 330 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF426-202 - 554 1.1e-16 60.6 67.9 5 12 0.25 2.2e+02 2.3 0.1 2 12 336 346 335 359 0.72 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF426-202 - 554 1.1e-16 60.6 67.9 6 12 1.9e-05 0.017 15.4 0.1 2 24 364 386 363 386 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF426-202 - 554 1.1e-16 60.6 67.9 7 12 0.0033 3 8.2 0.0 2 24 392 414 391 414 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF426-202 - 554 1.1e-16 60.6 67.9 8 12 0.036 32 4.9 0.6 4 24 422 442 421 443 0.88 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF426-202 - 554 1.1e-16 60.6 67.9 9 12 0.023 21 5.6 0.3 2 22 448 468 447 468 0.86 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF426-202 - 554 1.1e-16 60.6 67.9 10 12 9.6e-05 0.086 13.2 1.6 2 24 476 498 475 498 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF426-202 - 554 1.1e-16 60.6 67.9 11 12 0.0058 5.2 7.5 2.0 2 24 504 526 503 526 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF426-202 - 554 1.1e-16 60.6 67.9 12 12 0.0033 2.9 8.3 0.1 2 21 532 551 531 552 0.94 Zinc-finger double-stranded RNA-binding # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF426-202.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF426-202.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF426-202.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF426-202.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF426-202.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:06:11 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- KRAB PF01352.27 42 ZNF426-203 - 118 2.4e-25 87.9 0.8 1 1 4e-29 3.6e-25 87.3 0.8 1 42 41 82 41 82 0.98 KRAB box # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF426-203.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF426-203.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF426-203.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF426-203.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF426-203.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:06:11 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZNF426-204 - 516 3.4e-76 248.5 103.0 1 15 2.1 1.7e+03 -0.3 0.3 17 25 110 118 100 119 0.78 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF426-204 - 516 3.4e-76 248.5 103.0 2 15 2 1.7e+03 -0.2 0.1 2 25 123 146 123 147 0.74 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF426-204 - 516 3.4e-76 248.5 103.0 3 15 2.9e-05 0.024 15.1 0.4 7 25 178 196 177 197 0.87 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF426-204 - 516 3.4e-76 248.5 103.0 4 15 0.0002 0.16 12.5 0.1 2 16 201 215 200 215 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF426-204 - 516 3.4e-76 248.5 103.0 5 15 0.0015 1.2 9.7 2.2 12 24 239 251 237 253 0.89 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF426-204 - 516 3.4e-76 248.5 103.0 6 15 1.2e-12 9.4e-10 38.5 1.0 2 25 257 280 256 281 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF426-204 - 516 3.4e-76 248.5 103.0 7 15 2.4e-09 1.9e-06 28.0 0.8 5 25 288 308 284 309 0.89 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF426-204 - 516 3.4e-76 248.5 103.0 8 15 8.5e-11 6.9e-08 32.6 0.2 1 26 312 337 312 337 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF426-204 - 516 3.4e-76 248.5 103.0 9 15 1.9e-10 1.5e-07 31.5 0.1 2 25 341 364 340 364 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF426-204 - 516 3.4e-76 248.5 103.0 10 15 8e-07 0.00065 20.0 0.8 1 25 368 392 368 393 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF426-204 - 516 3.4e-76 248.5 103.0 11 15 3e-10 2.4e-07 30.8 1.0 2 25 397 420 397 421 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF426-204 - 516 3.4e-76 248.5 103.0 12 15 3e-12 2.4e-09 37.2 2.8 1 26 424 449 424 449 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF426-204 - 516 3.4e-76 248.5 103.0 13 15 9.8e-11 8e-08 32.4 3.2 3 25 454 476 452 477 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF426-204 - 516 3.4e-76 248.5 103.0 14 15 3.3e-08 2.7e-05 24.4 3.7 2 26 481 505 480 505 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF426-204 - 516 3.4e-76 248.5 103.0 15 15 2.6 2.1e+03 -0.6 0.5 1 9 508 516 508 516 0.88 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZNF426-204 - 516 4.8e-62 203.1 96.0 1 12 0.00036 0.3 11.6 3.1 2 22 109 129 108 129 0.93 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF426-204 - 516 4.8e-62 203.1 96.0 2 12 1.5e-09 1.2e-06 28.6 1.8 1 23 186 208 186 208 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF426-204 - 516 4.8e-62 203.1 96.0 3 12 4e-08 3.3e-05 24.1 0.8 1 23 242 264 242 264 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF426-204 - 516 4.8e-62 203.1 96.0 4 12 5.4e-07 0.00044 20.6 0.6 1 23 270 292 270 292 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF426-204 - 516 4.8e-62 203.1 96.0 5 12 1.1e-07 8.6e-05 22.8 0.4 1 23 298 320 298 320 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF426-204 - 516 4.8e-62 203.1 96.0 6 12 1.4e-07 0.00012 22.4 0.7 1 23 326 348 326 348 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF426-204 - 516 4.8e-62 203.1 96.0 7 12 1.8e-07 0.00015 22.0 0.1 1 23 354 376 354 376 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF426-204 - 516 4.8e-62 203.1 96.0 8 12 8e-08 6.5e-05 23.2 3.5 2 23 383 404 382 404 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF426-204 - 516 4.8e-62 203.1 96.0 9 12 4.2e-09 3.4e-06 27.2 2.4 1 23 410 432 410 432 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF426-204 - 516 4.8e-62 203.1 96.0 10 12 9.5e-08 7.8e-05 22.9 2.5 1 23 438 460 438 460 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF426-204 - 516 4.8e-62 203.1 96.0 11 12 2.2e-05 0.018 15.5 2.8 1 23 466 488 466 488 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF426-204 - 516 4.8e-62 203.1 96.0 12 12 4.8e-07 0.00039 20.7 2.0 1 23 494 516 494 516 0.98 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZNF426-204 - 516 2.9e-44 145.9 93.4 1 12 0.00027 0.22 12.5 3.6 3 23 110 130 108 131 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF426-204 - 516 2.9e-44 145.9 93.4 2 12 1.3e-07 0.00011 22.7 1.3 1 23 186 208 186 209 0.97 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF426-204 - 516 2.9e-44 145.9 93.4 3 12 6.3e-06 0.0051 17.5 0.5 1 23 242 264 242 265 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF426-204 - 516 2.9e-44 145.9 93.4 4 12 0.00088 0.72 10.9 0.6 1 19 270 288 270 293 0.88 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF426-204 - 516 2.9e-44 145.9 93.4 5 12 4.8e-06 0.0039 17.9 0.5 1 23 298 320 298 321 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF426-204 - 516 2.9e-44 145.9 93.4 6 12 2.5e-07 0.00021 21.9 0.6 1 23 326 348 326 349 0.97 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF426-204 - 516 2.9e-44 145.9 93.4 7 12 2.9e-05 0.024 15.5 0.2 1 23 354 376 354 377 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF426-204 - 516 2.9e-44 145.9 93.4 8 12 1.7e-06 0.0014 19.3 3.1 2 23 383 404 382 405 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF426-204 - 516 2.9e-44 145.9 93.4 9 12 9.1e-06 0.0074 17.0 1.4 1 23 410 432 410 433 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF426-204 - 516 2.9e-44 145.9 93.4 10 12 2.7e-05 0.022 15.5 2.3 1 23 438 460 438 461 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF426-204 - 516 2.9e-44 145.9 93.4 11 12 5.6e-06 0.0046 17.7 2.7 1 23 466 488 466 489 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF426-204 - 516 2.9e-44 145.9 93.4 12 12 2.2e-05 0.018 15.9 1.6 1 23 494 516 494 516 0.95 C2H2-type zinc finger KRAB PF01352.27 42 ZNF426-204 - 516 2.3e-24 84.8 0.8 1 1 4.7e-27 3.8e-24 84.0 0.8 1 42 3 44 3 44 0.98 KRAB box zf-C2H2_6 PF13912.6 27 ZNF426-204 - 516 1.6e-22 79.0 84.5 1 12 0.29 2.4e+02 1.9 0.5 4 12 110 118 109 119 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF426-204 - 516 1.6e-22 79.0 84.5 2 12 0.00049 0.4 10.7 1.6 2 24 186 208 185 211 0.90 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF426-204 - 516 1.6e-22 79.0 84.5 3 12 0.00076 0.62 10.1 0.6 2 24 242 264 242 267 0.86 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF426-204 - 516 1.6e-22 79.0 84.5 4 12 0.00021 0.17 11.9 0.9 2 13 270 281 270 293 0.87 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF426-204 - 516 1.6e-22 79.0 84.5 5 12 5.6e-06 0.0046 16.9 1.3 2 24 298 320 298 322 0.95 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF426-204 - 516 1.6e-22 79.0 84.5 6 12 5.1e-05 0.042 13.9 0.5 2 24 326 348 326 351 0.83 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF426-204 - 516 1.6e-22 79.0 84.5 7 12 0.00016 0.13 12.2 0.2 2 25 354 377 354 379 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF426-204 - 516 1.6e-22 79.0 84.5 8 12 2.7e-06 0.0022 18.0 0.9 3 26 383 406 383 407 0.95 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF426-204 - 516 1.6e-22 79.0 84.5 9 12 0.00024 0.19 11.7 1.2 2 24 410 432 410 435 0.88 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF426-204 - 516 1.6e-22 79.0 84.5 10 12 0.0017 1.4 9.0 1.2 2 12 438 448 438 449 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF426-204 - 516 1.6e-22 79.0 84.5 11 12 0.0034 2.8 8.1 2.8 2 12 466 476 466 490 0.87 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF426-204 - 516 1.6e-22 79.0 84.5 12 12 0.0045 3.6 7.7 0.5 2 12 494 504 494 513 0.80 C2H2-type zinc finger zf-C2H2_jaz PF12171.8 27 ZNF426-204 - 516 4.1e-17 62.0 67.9 1 12 0.56 4.5e+02 1.3 1.4 4 23 110 129 109 131 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF426-204 - 516 4.1e-17 62.0 67.9 2 12 6.6e-08 5.4e-05 23.4 1.8 2 24 186 208 185 209 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF426-204 - 516 4.1e-17 62.0 67.9 3 12 0.14 1.2e+02 3.2 0.2 2 12 242 252 241 264 0.72 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF426-204 - 516 4.1e-17 62.0 67.9 4 12 0.002 1.6 9.1 0.6 2 20 270 288 269 292 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF426-204 - 516 4.1e-17 62.0 67.9 5 12 0.25 2.1e+02 2.4 0.1 2 12 298 308 297 321 0.72 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF426-204 - 516 4.1e-17 62.0 67.9 6 12 2e-05 0.016 15.5 0.1 2 24 326 348 325 348 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF426-204 - 516 4.1e-17 62.0 67.9 7 12 0.0034 2.8 8.4 0.0 2 24 354 376 353 376 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF426-204 - 516 4.1e-17 62.0 67.9 8 12 0.037 30 5.1 0.6 4 24 384 404 383 405 0.88 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF426-204 - 516 4.1e-17 62.0 67.9 9 12 0.024 19 5.7 0.3 2 22 410 430 409 430 0.86 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF426-204 - 516 4.1e-17 62.0 67.9 10 12 9.7e-05 0.079 13.3 1.6 2 24 438 460 437 460 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF426-204 - 516 4.1e-17 62.0 67.9 11 12 0.0059 4.8 7.6 2.0 2 24 466 488 465 488 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF426-204 - 516 4.1e-17 62.0 67.9 12 12 0.0033 2.7 8.4 0.1 2 21 494 513 493 514 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_11 PF16622.5 29 ZNF426-204 - 516 5.1e-07 29.3 64.9 1 12 0.056 46 3.9 2.2 5 25 108 128 107 129 0.91 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF426-204 - 516 5.1e-07 29.3 64.9 2 12 0.042 34 4.3 0.9 3 25 184 206 182 208 0.83 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF426-204 - 516 5.1e-07 29.3 64.9 3 12 0.047 38 4.2 0.1 5 25 242 262 240 264 0.86 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF426-204 - 516 5.1e-07 29.3 64.9 4 12 0.56 4.6e+02 0.7 0.1 6 14 271 279 269 288 0.79 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF426-204 - 516 5.1e-07 29.3 64.9 5 12 0.03 25 4.8 0.2 7 24 300 317 298 318 0.88 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF426-204 - 516 5.1e-07 29.3 64.9 6 12 0.39 3.1e+02 1.2 0.2 6 15 327 336 325 346 0.72 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF426-204 - 516 5.1e-07 29.3 64.9 7 12 0.002 1.7 8.5 0.2 7 25 356 374 354 376 0.94 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF426-204 - 516 5.1e-07 29.3 64.9 8 12 0.011 8.9 6.2 0.5 2 25 379 402 378 404 0.91 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF426-204 - 516 5.1e-07 29.3 64.9 9 12 0.0051 4.1 7.2 0.3 7 26 412 431 408 432 0.94 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF426-204 - 516 5.1e-07 29.3 64.9 10 12 0.079 65 3.4 0.4 6 20 439 453 436 458 0.81 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF426-204 - 516 5.1e-07 29.3 64.9 11 12 0.017 14 5.5 0.6 6 23 467 484 464 485 0.86 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF426-204 - 516 5.1e-07 29.3 64.9 12 12 7.8e-07 0.00064 19.4 0.2 5 26 494 515 490 516 0.92 zinc-finger C2H2-type zf-trcl PF13451.6 48 ZNF426-204 - 516 6.5e-07 29.1 54.1 1 11 4.8 3.9e+03 -2.2 1.7 7 14 110 117 106 118 0.81 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF426-204 - 516 6.5e-07 29.1 54.1 2 11 0.027 22 5.0 0.1 2 15 183 196 182 205 0.87 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF426-204 - 516 6.5e-07 29.1 54.1 3 11 0.069 57 3.7 0.1 3 12 240 249 238 255 0.81 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF426-204 - 516 6.5e-07 29.1 54.1 4 11 0.0055 4.5 7.2 0.1 3 19 268 284 266 288 0.85 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF426-204 - 516 6.5e-07 29.1 54.1 5 11 0.0033 2.7 8.0 0.1 3 15 296 308 294 312 0.87 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF426-204 - 516 6.5e-07 29.1 54.1 6 11 0.0025 2 8.4 0.1 2 15 323 336 322 339 0.92 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF426-204 - 516 6.5e-07 29.1 54.1 7 11 0.021 17 5.4 0.1 3 15 352 364 350 368 0.87 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF426-204 - 516 6.5e-07 29.1 54.1 8 11 0.93 7.6e+02 0.1 0.5 2 14 379 391 378 395 0.82 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF426-204 - 516 6.5e-07 29.1 54.1 9 11 0.0021 1.7 8.6 0.1 3 17 408 422 406 424 0.87 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF426-204 - 516 6.5e-07 29.1 54.1 10 11 0.012 9.9 6.2 0.1 3 18 436 451 434 456 0.82 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF426-204 - 516 6.5e-07 29.1 54.1 11 11 0.068 55 3.8 7.6 3 42 464 502 462 507 0.74 Probable zinc-ribbon domain # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF426-204.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF426-204.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF426-204.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF426-204.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF426-204.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:06:12 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF426-205.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF426-205.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF426-205.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF426-205.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF426-205.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:06:12 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZNF429-201 - 674 2.2e-117 378.7 157.8 1 18 6.1e-07 0.00057 20.2 4.5 8 24 166 182 163 182 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF429-201 - 674 2.2e-117 378.7 157.8 2 18 0.0069 6.5 7.4 0.2 2 18 188 204 187 210 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF429-201 - 674 2.2e-117 378.7 157.8 3 18 1.5e-05 0.014 15.8 1.3 2 26 216 240 215 240 0.86 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF429-201 - 674 2.2e-117 378.7 157.8 4 18 2e-11 1.9e-08 34.3 1.9 2 25 244 267 243 268 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF429-201 - 674 2.2e-117 378.7 157.8 5 18 2.8e-10 2.6e-07 30.7 1.3 2 25 272 295 271 295 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF429-201 - 674 2.2e-117 378.7 157.8 6 18 6.8e-09 6.4e-06 26.4 3.5 3 25 301 323 300 324 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF429-201 - 674 2.2e-117 378.7 157.8 7 18 1.9e-11 1.8e-08 34.5 1.1 2 25 328 351 327 351 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF429-201 - 674 2.2e-117 378.7 157.8 8 18 1.6e-10 1.5e-07 31.5 1.0 2 25 356 379 355 380 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF429-201 - 674 2.2e-117 378.7 157.8 9 18 6.3e-06 0.0059 17.0 2.1 2 25 384 407 383 408 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF429-201 - 674 2.2e-117 378.7 157.8 10 18 2e-08 1.9e-05 24.9 1.8 7 25 417 435 416 436 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF429-201 - 674 2.2e-117 378.7 157.8 11 18 9.6e-11 9e-08 32.2 2.0 2 25 440 463 439 464 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF429-201 - 674 2.2e-117 378.7 157.8 12 18 4.3e-12 4.1e-09 36.5 2.4 1 26 467 492 467 492 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF429-201 - 674 2.2e-117 378.7 157.8 13 18 4.8e-11 4.5e-08 33.2 0.6 1 24 495 518 495 519 0.97 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF429-201 - 674 2.2e-117 378.7 157.8 14 18 1.8e-11 1.7e-08 34.5 1.6 2 25 524 547 523 548 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF429-201 - 674 2.2e-117 378.7 157.8 15 18 3.5e-11 3.3e-08 33.6 4.3 2 26 552 576 551 576 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF429-201 - 674 2.2e-117 378.7 157.8 16 18 2.6e-11 2.4e-08 34.0 1.1 1 25 579 603 579 604 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF429-201 - 674 2.2e-117 378.7 157.8 17 18 5e-10 4.7e-07 30.0 2.8 2 26 608 632 607 632 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF429-201 - 674 2.2e-117 378.7 157.8 18 18 3.5 3.3e+03 -1.2 0.3 2 10 636 644 635 648 0.87 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZNF429-201 - 674 9.9e-81 262.0 135.0 1 17 1.4e-06 0.0013 19.1 4.5 1 23 173 195 173 195 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF429-201 - 674 9.9e-81 262.0 135.0 2 17 0.093 87 3.9 0.1 8 21 208 221 201 222 0.82 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF429-201 - 674 9.9e-81 262.0 135.0 3 17 1.2e-07 0.00011 22.4 2.5 1 23 229 251 229 251 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF429-201 - 674 9.9e-81 262.0 135.0 4 17 1.8e-08 1.7e-05 25.0 2.2 1 23 257 279 257 279 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF429-201 - 674 9.9e-81 262.0 135.0 5 17 1e-06 0.00094 19.5 1.1 1 23 285 307 285 307 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF429-201 - 674 9.9e-81 262.0 135.0 6 17 3.7e-09 3.5e-06 27.2 1.7 1 23 313 335 313 335 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF429-201 - 674 9.9e-81 262.0 135.0 7 17 6.8e-06 0.0064 16.9 0.3 1 23 341 363 341 363 0.95 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF429-201 - 674 9.9e-81 262.0 135.0 8 17 4.7e-08 4.4e-05 23.7 1.1 1 23 369 391 369 391 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF429-201 - 674 9.9e-81 262.0 135.0 9 17 0.73 6.9e+02 1.0 0.2 5 16 401 412 400 414 0.76 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF429-201 - 674 9.9e-81 262.0 135.0 10 17 1.3e-08 1.2e-05 25.5 1.2 1 23 425 447 425 447 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF429-201 - 674 9.9e-81 262.0 135.0 11 17 1.1e-09 1e-06 28.8 2.9 1 23 453 475 453 475 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF429-201 - 674 9.9e-81 262.0 135.0 12 17 2.4e-09 2.2e-06 27.8 0.8 1 23 481 503 481 503 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF429-201 - 674 9.9e-81 262.0 135.0 13 17 4.1e-06 0.0039 17.6 0.5 1 23 509 531 509 531 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF429-201 - 674 9.9e-81 262.0 135.0 14 17 7e-08 6.6e-05 23.1 1.1 1 23 537 559 537 559 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF429-201 - 674 9.9e-81 262.0 135.0 15 17 1.3e-07 0.00012 22.3 4.0 1 23 565 587 565 587 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF429-201 - 674 9.9e-81 262.0 135.0 16 17 7e-08 6.6e-05 23.1 1.1 1 23 593 615 593 615 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF429-201 - 674 9.9e-81 262.0 135.0 17 17 1.6e-06 0.0015 18.9 1.2 1 23 621 643 621 643 0.98 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZNF429-201 - 674 3.7e-45 148.7 125.5 1 17 7.1e-05 0.067 14.1 3.4 1 23 173 195 173 196 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF429-201 - 674 3.7e-45 148.7 125.5 2 17 5.7 5.4e+03 -1.2 0.0 8 21 208 221 201 222 0.76 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF429-201 - 674 3.7e-45 148.7 125.5 3 17 8.9e-05 0.084 13.8 1.4 1 23 229 251 229 252 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF429-201 - 674 3.7e-45 148.7 125.5 4 17 4.8e-06 0.0045 17.7 1.5 1 23 257 279 257 280 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF429-201 - 674 3.7e-45 148.7 125.5 5 17 6e-05 0.057 14.3 0.7 1 23 285 307 285 308 0.91 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF429-201 - 674 3.7e-45 148.7 125.5 6 17 1.6e-05 0.015 16.1 1.1 1 23 313 335 313 336 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF429-201 - 674 3.7e-45 148.7 125.5 7 17 0.00088 0.83 10.7 0.4 1 23 341 363 341 364 0.88 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF429-201 - 674 3.7e-45 148.7 125.5 8 17 6.8e-06 0.0064 17.2 0.9 1 23 369 391 369 392 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF429-201 - 674 3.7e-45 148.7 125.5 9 17 0.3 2.8e+02 2.8 0.3 5 16 401 412 400 414 0.83 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF429-201 - 674 3.7e-45 148.7 125.5 10 17 7.9e-06 0.0074 17.0 0.8 1 23 425 447 425 448 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF429-201 - 674 3.7e-45 148.7 125.5 11 17 3.5e-05 0.033 15.0 1.9 1 23 453 475 453 476 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF429-201 - 674 3.7e-45 148.7 125.5 12 17 6.2e-06 0.0058 17.4 0.9 1 23 481 503 481 504 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF429-201 - 674 3.7e-45 148.7 125.5 13 17 0.00016 0.15 12.9 0.5 1 23 509 531 509 532 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF429-201 - 674 3.7e-45 148.7 125.5 14 17 9.4e-06 0.0089 16.8 0.9 1 23 537 559 537 560 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF429-201 - 674 3.7e-45 148.7 125.5 15 17 0.00011 0.11 13.4 3.3 1 23 565 587 565 588 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF429-201 - 674 3.7e-45 148.7 125.5 16 17 9.4e-06 0.0089 16.8 0.9 1 23 593 615 593 616 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF429-201 - 674 3.7e-45 148.7 125.5 17 17 8.6e-05 0.081 13.8 1.2 1 23 621 643 621 644 0.95 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF429-201 - 674 7.3e-28 96.0 130.9 1 16 0.00025 0.23 11.5 3.9 2 24 173 195 173 198 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF429-201 - 674 7.3e-28 96.0 130.9 2 16 0.91 8.6e+02 0.1 0.1 2 22 201 221 200 222 0.86 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF429-201 - 674 7.3e-28 96.0 130.9 3 16 7.1e-05 0.067 13.2 3.1 1 24 228 251 228 254 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF429-201 - 674 7.3e-28 96.0 130.9 4 16 1.6e-07 0.00015 21.6 2.1 2 25 257 280 257 282 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF429-201 - 674 7.3e-28 96.0 130.9 5 16 0.00022 0.21 11.7 0.5 2 12 285 295 285 296 0.95 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF429-201 - 674 7.3e-28 96.0 130.9 6 16 2.8e-05 0.027 14.5 1.5 2 24 313 335 313 338 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF429-201 - 674 7.3e-28 96.0 130.9 7 16 0.0052 4.9 7.3 0.6 2 12 341 351 341 363 0.77 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF429-201 - 674 7.3e-28 96.0 130.9 8 16 0.002 1.9 8.6 1.3 2 24 369 391 369 394 0.88 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF429-201 - 674 7.3e-28 96.0 130.9 9 16 9.3e-05 0.088 12.8 0.8 2 24 425 447 425 450 0.91 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF429-201 - 674 7.3e-28 96.0 130.9 10 16 0.00013 0.12 12.4 1.8 2 24 453 475 453 478 0.92 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF429-201 - 674 7.3e-28 96.0 130.9 11 16 2.6e-05 0.025 14.6 2.3 2 25 481 504 481 506 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF429-201 - 674 7.3e-28 96.0 130.9 12 16 0.018 17 5.6 0.4 2 11 509 518 509 532 0.88 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF429-201 - 674 7.3e-28 96.0 130.9 13 16 0.00032 0.31 11.1 1.4 2 24 537 559 537 562 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF429-201 - 674 7.3e-28 96.0 130.9 14 16 0.00086 0.81 9.8 4.2 2 25 565 588 565 590 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF429-201 - 674 7.3e-28 96.0 130.9 15 16 0.00029 0.28 11.2 1.6 2 24 593 615 593 618 0.92 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF429-201 - 674 7.3e-28 96.0 130.9 16 16 0.0026 2.4 8.2 1.6 2 25 621 644 621 645 0.97 C2H2-type zinc finger KRAB PF01352.27 42 ZNF429-201 - 674 2.7e-23 81.3 0.3 1 1 6.3e-26 5.9e-23 80.2 0.3 1 42 3 44 3 44 0.98 KRAB box XPA_N PF01286.18 32 ZNF429-201 - 674 2.7e-23 81.7 63.9 1 15 0.092 87 3.3 1.5 3 12 174 183 173 191 0.80 XPA protein N-terminal XPA_N PF01286.18 32 ZNF429-201 - 674 2.7e-23 81.7 63.9 2 15 0.0086 8.1 6.6 0.1 3 12 230 239 229 247 0.87 XPA protein N-terminal XPA_N PF01286.18 32 ZNF429-201 - 674 2.7e-23 81.7 63.9 3 15 0.0085 8 6.6 0.1 3 12 258 267 256 273 0.90 XPA protein N-terminal XPA_N PF01286.18 32 ZNF429-201 - 674 2.7e-23 81.7 63.9 4 15 0.00088 0.83 9.7 0.2 3 14 286 297 284 303 0.88 XPA protein N-terminal XPA_N PF01286.18 32 ZNF429-201 - 674 2.7e-23 81.7 63.9 5 15 0.0025 2.4 8.3 0.1 3 14 314 325 312 330 0.89 XPA protein N-terminal XPA_N PF01286.18 32 ZNF429-201 - 674 2.7e-23 81.7 63.9 6 15 0.0027 2.5 8.2 0.1 3 14 342 353 340 359 0.85 XPA protein N-terminal XPA_N PF01286.18 32 ZNF429-201 - 674 2.7e-23 81.7 63.9 7 15 0.00069 0.65 10.1 0.1 3 14 370 381 368 386 0.90 XPA protein N-terminal XPA_N PF01286.18 32 ZNF429-201 - 674 2.7e-23 81.7 63.9 8 15 0.0069 6.5 6.9 0.1 3 14 426 437 424 442 0.87 XPA protein N-terminal XPA_N PF01286.18 32 ZNF429-201 - 674 2.7e-23 81.7 63.9 9 15 0.0033 3.2 7.9 0.1 3 14 454 465 452 471 0.86 XPA protein N-terminal XPA_N PF01286.18 32 ZNF429-201 - 674 2.7e-23 81.7 63.9 10 15 0.00051 0.48 10.5 0.3 3 14 482 493 480 498 0.91 XPA protein N-terminal XPA_N PF01286.18 32 ZNF429-201 - 674 2.7e-23 81.7 63.9 11 15 0.0018 1.7 8.7 0.1 3 14 510 521 508 527 0.83 XPA protein N-terminal XPA_N PF01286.18 32 ZNF429-201 - 674 2.7e-23 81.7 63.9 12 15 0.0012 1.2 9.3 0.1 3 14 538 549 536 555 0.87 XPA protein N-terminal XPA_N PF01286.18 32 ZNF429-201 - 674 2.7e-23 81.7 63.9 13 15 0.018 17 5.6 0.3 3 14 566 577 564 582 0.90 XPA protein N-terminal XPA_N PF01286.18 32 ZNF429-201 - 674 2.7e-23 81.7 63.9 14 15 0.0012 1.2 9.3 0.1 3 14 594 605 592 611 0.87 XPA protein N-terminal XPA_N PF01286.18 32 ZNF429-201 - 674 2.7e-23 81.7 63.9 15 15 0.0029 2.8 8.1 0.1 3 14 622 633 620 639 0.88 XPA protein N-terminal zf-C2H2_jaz PF12171.8 27 ZNF429-201 - 674 2.2e-21 75.6 82.2 1 16 4.6 4.3e+03 -1.8 1.8 2 22 173 193 172 193 0.83 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF429-201 - 674 2.2e-21 75.6 82.2 2 16 9.1 8.6e+03 -2.8 0.1 11 22 210 221 210 221 0.77 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF429-201 - 674 2.2e-21 75.6 82.2 3 16 0.0052 4.9 7.6 1.8 2 22 229 249 228 249 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF429-201 - 674 2.2e-21 75.6 82.2 4 16 0.004 3.7 7.9 0.1 2 22 257 277 256 277 0.91 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF429-201 - 674 2.2e-21 75.6 82.2 5 16 0.0022 2.1 8.7 0.2 2 21 285 304 284 305 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF429-201 - 674 2.2e-21 75.6 82.2 6 16 9.6e-05 0.091 13.1 0.1 2 22 313 333 312 333 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF429-201 - 674 2.2e-21 75.6 82.2 7 16 0.0063 5.9 7.3 0.2 2 20 341 359 340 360 0.91 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF429-201 - 674 2.2e-21 75.6 82.2 8 16 0.0045 4.3 7.7 0.2 2 22 369 389 368 389 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF429-201 - 674 2.2e-21 75.6 82.2 9 16 0.006 5.7 7.4 0.1 2 22 425 445 424 445 0.90 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF429-201 - 674 2.2e-21 75.6 82.2 10 16 0.0048 4.5 7.7 0.1 2 21 453 472 452 473 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF429-201 - 674 2.2e-21 75.6 82.2 11 16 0.00092 0.87 10.0 0.6 2 22 481 501 480 501 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF429-201 - 674 2.2e-21 75.6 82.2 12 16 0.0095 9 6.7 0.1 2 22 509 529 508 529 0.90 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF429-201 - 674 2.2e-21 75.6 82.2 13 16 0.0002 0.19 12.1 0.2 2 22 537 557 536 557 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF429-201 - 674 2.2e-21 75.6 82.2 14 16 0.0013 1.2 9.5 1.8 2 22 565 585 564 585 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF429-201 - 674 2.2e-21 75.6 82.2 15 16 0.0002 0.19 12.1 0.2 2 22 593 613 592 613 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF429-201 - 674 2.2e-21 75.6 82.2 16 16 0.00032 0.3 11.4 0.2 2 22 621 641 620 641 0.94 Zinc-finger double-stranded RNA-binding zf_UBZ PF18439.1 32 ZNF429-201 - 674 8.6e-19 66.8 67.9 1 15 0.0078 7.4 6.3 0.8 3 20 173 191 171 192 0.84 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF429-201 - 674 8.6e-19 66.8 67.9 2 15 0.0041 3.9 7.2 0.3 2 14 228 240 227 248 0.80 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF429-201 - 674 8.6e-19 66.8 67.9 3 15 0.0061 5.7 6.6 0.1 3 20 257 275 255 276 0.78 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF429-201 - 674 8.6e-19 66.8 67.9 4 15 0.00035 0.33 10.6 0.2 3 20 285 303 283 304 0.82 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF429-201 - 674 8.6e-19 66.8 67.9 5 15 0.0028 2.7 7.7 0.1 3 20 313 331 311 332 0.88 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF429-201 - 674 8.6e-19 66.8 67.9 6 15 0.0083 7.9 6.2 0.1 3 13 341 351 339 360 0.81 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF429-201 - 674 8.6e-19 66.8 67.9 7 15 0.0022 2 8.0 0.2 3 17 369 383 367 388 0.82 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF429-201 - 674 8.6e-19 66.8 67.9 8 15 0.0082 7.7 6.2 0.1 3 13 425 435 423 444 0.82 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF429-201 - 674 8.6e-19 66.8 67.9 9 15 0.012 11 5.6 0.2 3 20 453 471 451 472 0.83 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF429-201 - 674 8.6e-19 66.8 67.9 10 15 0.00046 0.44 10.2 0.2 3 20 481 499 479 500 0.90 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF429-201 - 674 8.6e-19 66.8 67.9 11 15 0.0016 1.5 8.4 0.1 3 20 509 527 507 528 0.81 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF429-201 - 674 8.6e-19 66.8 67.9 12 15 0.002 1.8 8.2 0.2 3 20 537 555 535 556 0.81 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF429-201 - 674 8.6e-19 66.8 67.9 13 15 0.01 9.8 5.9 0.4 3 20 565 583 563 584 0.87 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF429-201 - 674 8.6e-19 66.8 67.9 14 15 0.002 1.8 8.2 0.2 3 20 593 611 591 612 0.81 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF429-201 - 674 8.6e-19 66.8 67.9 15 15 0.032 30 4.3 0.2 3 20 621 639 619 640 0.79 Ubiquitin-Binding Zinc Finger Zn-ribbon_8 PF09723.10 40 ZNF429-201 - 674 5.6e-16 58.4 99.9 1 17 0.21 2e+02 2.2 4.0 6 19 173 186 172 205 0.71 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF429-201 - 674 5.6e-16 58.4 99.9 2 17 1.5 1.4e+03 -0.6 0.1 6 16 201 211 200 219 0.81 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF429-201 - 674 5.6e-16 58.4 99.9 3 17 1.9e-05 0.018 15.1 5.0 6 38 229 268 228 270 0.83 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF429-201 - 674 5.6e-16 58.4 99.9 4 17 0.0032 3 8.0 0.4 6 18 257 269 256 277 0.84 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF429-201 - 674 5.6e-16 58.4 99.9 5 17 1.6e-05 0.015 15.4 4.5 6 38 285 324 284 326 0.79 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF429-201 - 674 5.6e-16 58.4 99.9 6 17 0.00027 0.26 11.5 5.6 6 34 313 348 312 351 0.83 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF429-201 - 674 5.6e-16 58.4 99.9 7 17 0.00034 0.32 11.2 5.6 6 34 341 376 340 379 0.80 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF429-201 - 674 5.6e-16 58.4 99.9 8 17 0.0039 3.7 7.7 2.0 6 20 369 383 368 404 0.76 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF429-201 - 674 5.6e-16 58.4 99.9 9 17 0.066 62 3.8 2.9 9 34 400 432 396 432 0.74 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF429-201 - 674 5.6e-16 58.4 99.9 10 17 1.9e-05 0.018 15.2 4.3 6 38 425 464 424 466 0.84 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF429-201 - 674 5.6e-16 58.4 99.9 11 17 9.5e-05 0.09 12.9 5.2 6 36 453 490 452 493 0.86 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF429-201 - 674 5.6e-16 58.4 99.9 12 17 0.0007 0.66 10.1 6.8 6 34 481 516 480 518 0.83 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF429-201 - 674 5.6e-16 58.4 99.9 13 17 0.00054 0.51 10.5 6.2 6 38 509 548 507 549 0.85 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF429-201 - 674 5.6e-16 58.4 99.9 14 17 0.0012 1.1 9.4 5.7 6 33 537 571 535 572 0.83 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF429-201 - 674 5.6e-16 58.4 99.9 15 17 0.00029 0.28 11.4 5.2 6 37 565 603 564 604 0.79 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF429-201 - 674 5.6e-16 58.4 99.9 16 17 0.00024 0.23 11.6 6.2 6 38 593 632 591 634 0.84 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF429-201 - 674 5.6e-16 58.4 99.9 17 17 0.015 14 5.9 0.6 6 20 621 635 620 643 0.80 Zinc ribbon domain zf-C2H2_11 PF16622.5 29 ZNF429-201 - 674 6.6e-11 41.8 69.1 1 17 0.18 1.7e+02 2.1 2.9 5 23 173 191 171 195 0.75 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF429-201 - 674 6.6e-11 41.8 69.1 2 17 0.33 3.1e+02 1.2 0.0 2 26 198 222 198 223 0.89 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF429-201 - 674 6.6e-11 41.8 69.1 3 17 0.067 63 3.5 0.3 5 26 229 250 226 251 0.81 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF429-201 - 674 6.6e-11 41.8 69.1 4 17 0.0099 9.4 6.1 0.1 5 26 257 278 254 279 0.87 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF429-201 - 674 6.6e-11 41.8 69.1 5 17 0.0014 1.3 8.8 0.1 5 26 285 306 282 307 0.90 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF429-201 - 674 6.6e-11 41.8 69.1 6 17 0.026 25 4.7 0.1 5 26 313 334 309 335 0.84 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF429-201 - 674 6.6e-11 41.8 69.1 7 17 0.0094 8.9 6.2 0.0 5 26 341 362 338 363 0.89 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF429-201 - 674 6.6e-11 41.8 69.1 8 17 0.0039 3.7 7.4 0.1 5 26 369 390 366 391 0.91 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF429-201 - 674 6.6e-11 41.8 69.1 9 17 0.75 7.1e+02 0.1 0.3 9 20 401 412 400 414 0.81 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF429-201 - 674 6.6e-11 41.8 69.1 10 17 0.00017 0.16 11.7 0.1 6 26 426 446 423 447 0.93 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF429-201 - 674 6.6e-11 41.8 69.1 11 17 0.0087 8.2 6.3 0.2 5 26 453 474 449 475 0.90 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF429-201 - 674 6.6e-11 41.8 69.1 12 17 0.04 38 4.2 0.1 5 26 481 502 478 503 0.83 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF429-201 - 674 6.6e-11 41.8 69.1 13 17 0.1 99 2.8 0.1 5 23 509 527 506 531 0.76 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF429-201 - 674 6.6e-11 41.8 69.1 14 17 0.065 61 3.5 0.1 5 24 537 556 534 559 0.80 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF429-201 - 674 6.6e-11 41.8 69.1 15 17 0.032 31 4.5 0.4 5 26 565 586 562 587 0.89 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF429-201 - 674 6.6e-11 41.8 69.1 16 17 0.065 61 3.5 0.1 5 24 593 612 590 615 0.80 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF429-201 - 674 6.6e-11 41.8 69.1 17 17 0.11 1.1e+02 2.7 0.1 5 26 621 642 618 643 0.88 zinc-finger C2H2-type zf-trcl PF13451.6 48 ZNF429-201 - 674 1.3e-07 31.3 77.0 1 10 0.031 29 4.6 1.4 3 15 171 183 170 205 0.84 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF429-201 - 674 1.3e-07 31.3 77.0 2 10 0.043 41 4.2 0.1 3 15 227 239 225 243 0.84 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF429-201 - 674 1.3e-07 31.3 77.0 3 10 0.018 17 5.4 0.1 3 14 255 266 253 268 0.88 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF429-201 - 674 1.3e-07 31.3 77.0 4 10 0.0045 4.3 7.3 4.9 3 42 283 321 281 326 0.83 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF429-201 - 674 1.3e-07 31.3 77.0 5 10 0.0017 1.6 8.7 3.5 3 44 339 379 337 382 0.77 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF429-201 - 674 1.3e-07 31.3 77.0 6 10 0.0013 1.2 9.0 2.7 3 42 423 461 421 466 0.81 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF429-201 - 674 1.3e-07 31.3 77.0 7 10 0.031 29 4.6 0.2 3 14 479 490 476 495 0.71 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF429-201 - 674 1.3e-07 31.3 77.0 8 10 0.0022 2.1 8.3 2.8 3 42 507 545 505 551 0.76 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF429-201 - 674 1.3e-07 31.3 77.0 9 10 0.01 9.9 6.2 0.1 3 17 563 577 561 581 0.86 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF429-201 - 674 1.3e-07 31.3 77.0 10 10 0.082 77 3.3 5.0 3 42 591 629 589 635 0.73 Probable zinc-ribbon domain # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF429-201.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF429-201.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF429-201.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF429-201.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF429-201.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:06:13 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF429-202.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF429-202.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF429-202.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF429-202.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF429-202.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:06:13 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF429-203.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF429-203.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF429-203.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF429-203.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF429-203.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:06:14 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF429-204.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF429-204.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF429-204.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF429-204.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF429-204.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:06:14 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF429-205.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF429-205.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF429-205.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF429-205.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF429-205.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:06:14 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- KRAB PF01352.27 42 ZNF429-206 - 122 3.2e-24 84.3 0.3 1 1 2.4e-28 4.3e-24 83.9 0.3 1 42 3 44 3 44 0.98 KRAB box # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF429-206.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF429-206.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF429-206.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF429-206.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF429-206.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:06:15 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF429-207.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF429-207.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF429-207.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF429-207.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF429-207.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:06:15 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF429-208.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF429-208.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF429-208.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF429-208.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF429-208.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:06:15 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZNF429-209 - 585 3.3e-100 324.4 128.1 1 15 6e-07 0.00049 20.4 4.5 8 24 166 182 163 182 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF429-209 - 585 3.3e-100 324.4 128.1 2 15 0.0068 5.5 7.6 0.2 2 18 188 204 187 210 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF429-209 - 585 3.3e-100 324.4 128.1 3 15 1.4e-05 0.012 16.0 1.3 2 26 216 240 215 240 0.86 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF429-209 - 585 3.3e-100 324.4 128.1 4 15 1.6e-10 1.3e-07 31.7 1.1 2 25 244 267 243 267 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF429-209 - 585 3.3e-100 324.4 128.1 5 15 6.7e-09 5.4e-06 26.6 3.5 3 25 273 295 272 296 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF429-209 - 585 3.3e-100 324.4 128.1 6 15 7.5e-07 0.00061 20.1 0.3 8 22 304 318 301 318 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF429-209 - 585 3.3e-100 324.4 128.1 7 15 7.6e-11 6.2e-08 32.7 0.6 2 25 325 348 324 349 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF429-209 - 585 3.3e-100 324.4 128.1 8 15 6.2e-06 0.005 17.2 2.1 2 25 353 376 352 377 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF429-209 - 585 3.3e-100 324.4 128.1 9 15 1.9e-08 1.6e-05 25.1 1.8 7 25 386 404 385 405 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF429-209 - 585 3.3e-100 324.4 128.1 10 15 9.4e-11 7.6e-08 32.4 2.0 2 25 409 432 408 433 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF429-209 - 585 3.3e-100 324.4 128.1 11 15 4.2e-12 3.5e-09 36.7 2.4 1 26 436 461 436 461 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF429-209 - 585 3.3e-100 324.4 128.1 12 15 4.7e-11 3.8e-08 33.4 0.6 1 24 464 487 464 488 0.97 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF429-209 - 585 3.3e-100 324.4 128.1 13 15 1.7e-11 1.4e-08 34.8 1.6 2 25 493 516 492 517 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF429-209 - 585 3.3e-100 324.4 128.1 14 15 3.4e-11 2.8e-08 33.8 4.3 2 26 521 545 520 545 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF429-209 - 585 3.3e-100 324.4 128.1 15 15 2.5e-11 2.1e-08 34.2 1.1 1 25 548 572 548 573 0.96 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZNF429-209 - 585 5.6e-63 206.0 109.9 1 15 1.3e-06 0.0011 19.3 4.5 1 23 173 195 173 195 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF429-209 - 585 5.6e-63 206.0 109.9 2 15 0.091 74 4.1 0.1 8 21 208 221 201 222 0.82 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF429-209 - 585 5.6e-63 206.0 109.9 3 15 1.2e-07 9.5e-05 22.7 2.5 1 23 229 251 229 251 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF429-209 - 585 5.6e-63 206.0 109.9 4 15 9.8e-07 0.0008 19.7 1.1 1 23 257 279 257 279 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF429-209 - 585 5.6e-63 206.0 109.9 5 15 0.00016 0.13 12.8 0.2 1 13 285 297 285 301 0.90 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF429-209 - 585 5.6e-63 206.0 109.9 6 15 0.38 3.1e+02 2.1 0.2 1 12 311 321 311 332 0.73 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF429-209 - 585 5.6e-63 206.0 109.9 7 15 4.6e-08 3.8e-05 23.9 1.1 1 23 338 360 338 360 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF429-209 - 585 5.6e-63 206.0 109.9 8 15 0.72 5.9e+02 1.3 0.2 5 16 370 381 369 383 0.76 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF429-209 - 585 5.6e-63 206.0 109.9 9 15 1.2e-08 1e-05 25.7 1.2 1 23 394 416 394 416 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF429-209 - 585 5.6e-63 206.0 109.9 10 15 1.1e-09 8.9e-07 29.0 2.9 1 23 422 444 422 444 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF429-209 - 585 5.6e-63 206.0 109.9 11 15 2.3e-09 1.9e-06 28.0 0.8 1 23 450 472 450 472 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF429-209 - 585 5.6e-63 206.0 109.9 12 15 4e-06 0.0033 17.8 0.5 1 23 478 500 478 500 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF429-209 - 585 5.6e-63 206.0 109.9 13 15 6.9e-08 5.6e-05 23.4 1.1 1 23 506 528 506 528 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF429-209 - 585 5.6e-63 206.0 109.9 14 15 1.3e-07 0.0001 22.5 4.0 1 23 534 556 534 556 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF429-209 - 585 5.6e-63 206.0 109.9 15 15 4.6e-07 0.00038 20.8 0.5 1 21 562 582 562 583 0.95 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZNF429-209 - 585 3.1e-37 124.0 101.7 1 15 6.9e-05 0.056 14.3 3.4 1 23 173 195 173 196 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF429-209 - 585 3.1e-37 124.0 101.7 2 15 5.6 4.6e+03 -1.0 0.0 8 21 208 221 201 222 0.76 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF429-209 - 585 3.1e-37 124.0 101.7 3 15 7.3e-05 0.06 14.2 1.6 1 23 229 251 229 252 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF429-209 - 585 3.1e-37 124.0 101.7 4 15 5.9e-05 0.048 14.5 0.7 1 23 257 279 257 280 0.91 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF429-209 - 585 3.1e-37 124.0 101.7 5 15 0.002 1.6 9.8 0.1 1 17 285 301 285 303 0.89 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF429-209 - 585 3.1e-37 124.0 101.7 6 15 0.031 25 6.1 0.2 1 23 311 332 311 333 0.90 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF429-209 - 585 3.1e-37 124.0 101.7 7 15 6.7e-06 0.0054 17.5 0.9 1 23 338 360 338 361 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF429-209 - 585 3.1e-37 124.0 101.7 8 15 0.3 2.4e+02 3.0 0.3 5 16 370 381 369 383 0.83 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF429-209 - 585 3.1e-37 124.0 101.7 9 15 7.7e-06 0.0063 17.3 0.8 1 23 394 416 394 417 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF429-209 - 585 3.1e-37 124.0 101.7 10 15 3.5e-05 0.028 15.2 1.9 1 23 422 444 422 445 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF429-209 - 585 3.1e-37 124.0 101.7 11 15 6e-06 0.0049 17.6 0.9 1 23 450 472 450 473 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF429-209 - 585 3.1e-37 124.0 101.7 12 15 0.00016 0.13 13.2 0.5 1 23 478 500 478 501 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF429-209 - 585 3.1e-37 124.0 101.7 13 15 9.2e-06 0.0075 17.0 0.9 1 23 506 528 506 529 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF429-209 - 585 3.1e-37 124.0 101.7 14 15 0.00011 0.091 13.6 3.3 1 23 534 556 534 557 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF429-209 - 585 3.1e-37 124.0 101.7 15 15 5.1e-05 0.042 14.7 0.4 1 21 562 582 562 583 0.94 C2H2-type zinc finger KRAB PF01352.27 42 ZNF429-209 - 585 5e-23 80.5 0.3 1 1 6.1e-26 5e-23 80.5 0.3 1 42 3 44 3 44 0.98 KRAB box XPA_N PF01286.18 32 ZNF429-209 - 585 1.7e-20 72.7 55.4 1 13 0.091 75 3.5 1.5 3 12 174 183 173 191 0.80 XPA protein N-terminal XPA_N PF01286.18 32 ZNF429-209 - 585 1.7e-20 72.7 55.4 2 13 0.0085 6.9 6.8 0.1 3 12 230 239 229 247 0.87 XPA protein N-terminal XPA_N PF01286.18 32 ZNF429-209 - 585 1.7e-20 72.7 55.4 3 13 0.00087 0.71 10.0 0.2 3 14 258 269 256 275 0.88 XPA protein N-terminal XPA_N PF01286.18 32 ZNF429-209 - 585 1.7e-20 72.7 55.4 4 13 0.0019 1.5 8.9 0.1 3 14 286 297 284 300 0.90 XPA protein N-terminal XPA_N PF01286.18 32 ZNF429-209 - 585 1.7e-20 72.7 55.4 5 13 0.017 14 5.8 0.1 3 16 312 325 310 328 0.78 XPA protein N-terminal XPA_N PF01286.18 32 ZNF429-209 - 585 1.7e-20 72.7 55.4 6 13 0.00068 0.56 10.3 0.1 3 14 339 350 337 355 0.90 XPA protein N-terminal XPA_N PF01286.18 32 ZNF429-209 - 585 1.7e-20 72.7 55.4 7 13 0.0069 5.6 7.1 0.1 3 14 395 406 393 411 0.87 XPA protein N-terminal XPA_N PF01286.18 32 ZNF429-209 - 585 1.7e-20 72.7 55.4 8 13 0.0033 2.7 8.1 0.1 3 14 423 434 421 440 0.86 XPA protein N-terminal XPA_N PF01286.18 32 ZNF429-209 - 585 1.7e-20 72.7 55.4 9 13 0.00051 0.41 10.7 0.3 3 14 451 462 449 467 0.91 XPA protein N-terminal XPA_N PF01286.18 32 ZNF429-209 - 585 1.7e-20 72.7 55.4 10 13 0.0018 1.5 8.9 0.1 3 14 479 490 477 496 0.83 XPA protein N-terminal XPA_N PF01286.18 32 ZNF429-209 - 585 1.7e-20 72.7 55.4 11 13 0.0012 1 9.5 0.1 3 14 507 518 505 524 0.87 XPA protein N-terminal XPA_N PF01286.18 32 ZNF429-209 - 585 1.7e-20 72.7 55.4 12 13 0.018 15 5.8 0.3 3 14 535 546 533 551 0.90 XPA protein N-terminal XPA_N PF01286.18 32 ZNF429-209 - 585 1.7e-20 72.7 55.4 13 13 0.0012 1 9.5 0.1 3 14 563 574 561 580 0.87 XPA protein N-terminal zf-C2H2_6 PF13912.6 27 ZNF429-209 - 585 1.5e-17 63.2 116.9 1 14 0.00024 0.2 11.7 3.9 2 24 173 195 173 198 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF429-209 - 585 1.5e-17 63.2 116.9 2 14 0.9 7.3e+02 0.3 0.1 2 22 201 221 200 222 0.86 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF429-209 - 585 1.5e-17 63.2 116.9 3 14 6.5e-05 0.053 13.5 3.5 1 25 228 252 228 254 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF429-209 - 585 1.5e-17 63.2 116.9 4 14 0.00022 0.18 11.9 0.5 2 12 257 267 257 268 0.95 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF429-209 - 585 1.5e-17 63.2 116.9 5 14 0.00034 0.28 11.2 0.3 2 13 285 296 285 300 0.88 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF429-209 - 585 1.5e-17 63.2 116.9 6 14 2.1 1.7e+03 -0.8 0.4 2 9 311 318 311 320 0.88 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF429-209 - 585 1.5e-17 63.2 116.9 7 14 0.002 1.6 8.8 1.3 2 24 338 360 338 363 0.88 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF429-209 - 585 1.5e-17 63.2 116.9 8 14 9.2e-05 0.075 13.1 0.8 2 24 394 416 394 419 0.91 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF429-209 - 585 1.5e-17 63.2 116.9 9 14 0.00013 0.11 12.6 1.8 2 24 422 444 422 447 0.92 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF429-209 - 585 1.5e-17 63.2 116.9 10 14 2.6e-05 0.021 14.8 2.3 2 25 450 473 450 475 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF429-209 - 585 1.5e-17 63.2 116.9 11 14 0.1 82 3.4 2.8 2 11 478 487 478 501 0.88 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF429-209 - 585 1.5e-17 63.2 116.9 12 14 0.00032 0.26 11.3 1.4 2 24 506 528 506 531 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF429-209 - 585 1.5e-17 63.2 116.9 13 14 0.00084 0.69 10.0 4.2 2 25 534 557 534 559 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF429-209 - 585 1.5e-17 63.2 116.9 14 14 0.00068 0.55 10.3 1.4 2 22 562 582 562 583 0.93 C2H2-type zinc finger zf_UBZ PF18439.1 32 ZNF429-209 - 585 6.1e-16 57.7 60.4 1 13 0.0077 6.3 6.5 0.8 3 20 173 191 171 192 0.84 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF429-209 - 585 6.1e-16 57.7 60.4 2 13 0.0041 3.3 7.4 0.3 2 14 228 240 227 248 0.80 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF429-209 - 585 6.1e-16 57.7 60.4 3 13 0.00035 0.28 10.8 0.2 3 20 257 275 255 276 0.82 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF429-209 - 585 6.1e-16 57.7 60.4 4 13 0.019 16 5.2 0.3 3 13 285 295 283 298 0.83 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF429-209 - 585 6.1e-16 57.7 60.4 5 13 0.075 61 3.3 0.1 3 17 311 325 309 329 0.75 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF429-209 - 585 6.1e-16 57.7 60.4 6 13 0.0021 1.7 8.3 0.2 3 17 338 352 336 357 0.82 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF429-209 - 585 6.1e-16 57.7 60.4 7 13 0.0081 6.6 6.4 0.1 3 13 394 404 392 413 0.82 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF429-209 - 585 6.1e-16 57.7 60.4 8 13 0.012 9.8 5.9 0.2 3 20 422 440 420 441 0.83 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF429-209 - 585 6.1e-16 57.7 60.4 9 13 0.00045 0.37 10.4 0.2 3 20 450 468 448 469 0.90 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF429-209 - 585 6.1e-16 57.7 60.4 10 13 0.0016 1.3 8.7 0.1 3 20 478 496 476 497 0.81 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF429-209 - 585 6.1e-16 57.7 60.4 11 13 0.0019 1.6 8.4 0.2 3 20 506 524 504 525 0.81 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF429-209 - 585 6.1e-16 57.7 60.4 12 13 0.01 8.4 6.1 0.4 3 20 534 552 532 553 0.87 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF429-209 - 585 6.1e-16 57.7 60.4 13 13 0.0019 1.6 8.4 0.2 3 20 562 580 560 581 0.81 Ubiquitin-Binding Zinc Finger Zn-ribbon_8 PF09723.10 40 ZNF429-209 - 585 2.1e-14 53.3 85.6 1 15 0.22 1.8e+02 2.3 4.1 6 19 173 186 172 205 0.71 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF429-209 - 585 2.1e-14 53.3 85.6 2 15 1.4 1.1e+03 -0.2 0.1 6 17 201 212 199 220 0.81 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF429-209 - 585 2.1e-14 53.3 85.6 3 15 0.00043 0.35 11.0 6.2 6 34 229 264 228 265 0.80 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF429-209 - 585 2.1e-14 53.3 85.6 4 15 1.3e-05 0.011 15.8 4.3 6 38 257 296 255 297 0.79 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF429-209 - 585 2.1e-14 53.3 85.6 5 15 1.7e-05 0.014 15.5 2.0 6 36 285 320 283 323 0.82 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF429-209 - 585 2.1e-14 53.3 85.6 6 15 0.044 36 4.6 0.2 6 21 311 326 310 330 0.83 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF429-209 - 585 2.1e-14 53.3 85.6 7 15 0.0044 3.6 7.8 2.2 6 20 338 352 337 373 0.76 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF429-209 - 585 2.1e-14 53.3 85.6 8 15 0.18 1.5e+02 2.6 3.3 9 33 369 400 365 400 0.75 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF429-209 - 585 2.1e-14 53.3 85.6 9 15 1.9e-05 0.015 15.4 4.3 6 38 394 433 393 435 0.84 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF429-209 - 585 2.1e-14 53.3 85.6 10 15 0.00011 0.087 13.0 5.3 6 36 422 459 421 461 0.86 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF429-209 - 585 2.1e-14 53.3 85.6 11 15 0.00079 0.65 10.2 7.0 6 34 450 485 449 487 0.83 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF429-209 - 585 2.1e-14 53.3 85.6 12 15 0.00057 0.46 10.6 6.1 6 37 478 516 477 517 0.84 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF429-209 - 585 2.1e-14 53.3 85.6 13 15 0.0024 1.9 8.7 5.4 6 32 506 539 505 539 0.83 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF429-209 - 585 2.1e-14 53.3 85.6 14 15 0.00027 0.22 11.6 5.4 6 38 534 573 533 574 0.80 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF429-209 - 585 2.1e-14 53.3 85.6 15 15 0.0018 1.5 9.0 0.7 6 20 562 576 560 583 0.80 Zinc ribbon domain zf-C2H2_jaz PF12171.8 27 ZNF429-209 - 585 3.6e-13 49.4 76.6 1 14 4.5 3.7e+03 -1.6 1.8 2 22 173 193 172 193 0.83 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF429-209 - 585 3.6e-13 49.4 76.6 2 14 9.1 7.4e+03 -2.6 0.1 11 22 210 221 210 221 0.77 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF429-209 - 585 3.6e-13 49.4 76.6 3 14 0.0051 4.1 7.8 1.8 2 22 229 249 228 249 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF429-209 - 585 3.6e-13 49.4 76.6 4 14 0.0022 1.8 9.0 0.2 2 21 257 276 256 277 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF429-209 - 585 3.6e-13 49.4 76.6 5 14 0.027 22 5.5 0.2 2 14 285 297 284 299 0.88 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF429-209 - 585 3.6e-13 49.4 76.6 6 14 0.47 3.8e+02 1.5 0.3 2 9 311 318 310 320 0.89 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF429-209 - 585 3.6e-13 49.4 76.6 7 14 0.0045 3.6 8.0 0.2 2 22 338 358 337 358 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF429-209 - 585 3.6e-13 49.4 76.6 8 14 0.0059 4.8 7.6 0.1 2 22 394 414 393 414 0.90 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF429-209 - 585 3.6e-13 49.4 76.6 9 14 0.0047 3.8 7.9 0.1 2 21 422 441 421 442 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF429-209 - 585 3.6e-13 49.4 76.6 10 14 0.0009 0.74 10.2 0.6 2 22 450 470 449 470 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF429-209 - 585 3.6e-13 49.4 76.6 11 14 0.0094 7.6 6.9 0.1 2 22 478 498 477 498 0.90 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF429-209 - 585 3.6e-13 49.4 76.6 12 14 0.00019 0.16 12.3 0.2 2 22 506 526 505 526 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF429-209 - 585 3.6e-13 49.4 76.6 13 14 0.0013 1 9.7 1.8 2 22 534 554 533 554 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF429-209 - 585 3.6e-13 49.4 76.6 14 14 9.6e-05 0.078 13.3 0.4 2 23 562 583 561 585 0.92 Zinc-finger double-stranded RNA-binding zf-trcl PF13451.6 48 ZNF429-209 - 585 5.6e-07 29.4 61.0 1 10 0.031 25 4.9 1.4 3 15 171 183 170 205 0.83 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF429-209 - 585 5.6e-07 29.4 61.0 2 10 0.043 35 4.4 0.1 3 15 227 239 225 243 0.84 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF429-209 - 585 5.6e-07 29.4 61.0 3 10 0.0048 3.9 7.4 5.1 3 42 255 293 253 298 0.83 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF429-209 - 585 5.6e-07 29.4 61.0 4 10 0.56 4.6e+02 0.8 0.1 3 12 309 318 306 321 0.70 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF429-209 - 585 5.6e-07 29.4 61.0 5 10 0.035 29 4.7 0.1 3 14 336 347 334 351 0.85 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF429-209 - 585 5.6e-07 29.4 61.0 6 10 0.0013 1.1 9.2 2.8 3 42 392 430 390 435 0.81 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF429-209 - 585 5.6e-07 29.4 61.0 7 10 0.031 25 4.9 0.2 3 14 448 459 445 464 0.71 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF429-209 - 585 5.6e-07 29.4 61.0 8 10 0.0023 1.9 8.5 2.7 3 42 476 514 474 519 0.76 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF429-209 - 585 5.6e-07 29.4 61.0 9 10 0.01 8.1 6.4 0.1 3 17 532 546 530 552 0.87 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF429-209 - 585 5.6e-07 29.4 61.0 10 10 0.037 30 4.6 0.1 3 14 560 571 558 575 0.87 Probable zinc-ribbon domain # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF429-209.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF429-209.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF429-209.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF429-209.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF429-209.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:06:16 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZNF430-201 - 570 1.3e-96 313.1 93.4 1 13 2.9e-07 0.00017 21.8 3.7 8 24 198 214 195 214 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF430-201 - 570 1.3e-96 313.1 93.4 2 13 9.4e-08 5.6e-05 23.4 0.8 1 25 219 243 219 243 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF430-201 - 570 1.3e-96 313.1 93.4 3 13 1.4e-12 8.1e-10 38.7 1.4 2 26 248 272 247 272 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF430-201 - 570 1.3e-96 313.1 93.4 4 13 3.8e-10 2.3e-07 30.9 1.0 2 25 276 299 275 300 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF430-201 - 570 1.3e-96 313.1 93.4 5 13 3.2e-10 1.9e-07 31.2 2.0 1 25 303 327 303 328 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF430-201 - 570 1.3e-96 313.1 93.4 6 13 9.6e-11 5.7e-08 32.8 1.4 1 25 331 355 331 356 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF430-201 - 570 1.3e-96 313.1 93.4 7 13 1.9e-08 1.1e-05 25.6 0.8 2 24 360 382 359 384 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF430-201 - 570 1.3e-96 313.1 93.4 8 13 2.1e-09 1.3e-06 28.6 1.5 2 25 388 411 387 411 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF430-201 - 570 1.3e-96 313.1 93.4 9 13 1.5e-11 8.7e-09 35.4 1.4 2 25 416 439 415 440 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF430-201 - 570 1.3e-96 313.1 93.4 10 13 1.8e-11 1e-08 35.2 0.4 1 25 443 467 443 468 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF430-201 - 570 1.3e-96 313.1 93.4 11 13 3e-09 1.8e-06 28.1 0.5 2 25 472 495 471 496 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF430-201 - 570 1.3e-96 313.1 93.4 12 13 9.9e-06 0.0059 17.0 0.1 1 25 499 523 499 524 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF430-201 - 570 1.3e-96 313.1 93.4 13 13 5.1e-08 3e-05 24.2 0.2 2 25 528 551 527 552 0.95 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZNF430-201 - 570 2e-62 204.3 90.4 1 13 0.00011 0.066 13.7 7.3 1 23 205 227 205 227 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF430-201 - 570 2e-62 204.3 90.4 2 13 1.1e-06 0.00065 20.0 0.7 1 23 233 255 233 255 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF430-201 - 570 2e-62 204.3 90.4 3 13 7.8e-08 4.7e-05 23.6 0.7 1 23 261 283 261 283 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF430-201 - 570 2e-62 204.3 90.4 4 13 6e-09 3.6e-06 27.1 3.6 1 23 289 311 289 311 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF430-201 - 570 2e-62 204.3 90.4 5 13 3.7e-08 2.2e-05 24.6 1.5 1 23 317 339 317 339 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF430-201 - 570 2e-62 204.3 90.4 6 13 8.3e-08 5e-05 23.5 0.4 1 23 345 367 345 367 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF430-201 - 570 2e-62 204.3 90.4 7 13 3.2e-07 0.00019 21.7 1.3 1 23 373 395 373 395 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF430-201 - 570 2e-62 204.3 90.4 8 13 1.6e-06 0.00095 19.5 0.6 1 23 401 423 401 423 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF430-201 - 570 2e-62 204.3 90.4 9 13 1.6e-07 9.4e-05 22.7 0.2 1 23 429 451 429 451 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF430-201 - 570 2e-62 204.3 90.4 10 13 8.8e-07 0.00053 20.3 0.2 1 23 457 479 457 479 0.95 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF430-201 - 570 2e-62 204.3 90.4 11 13 2e-08 1.2e-05 25.5 0.9 1 23 485 507 485 507 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF430-201 - 570 2e-62 204.3 90.4 12 13 7.6e-05 0.046 14.2 0.2 5 23 517 535 515 535 0.93 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF430-201 - 570 2e-62 204.3 90.4 13 13 0.87 5.2e+02 1.4 0.0 7 17 547 557 541 558 0.83 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZNF430-201 - 570 4.2e-33 111.2 80.3 1 12 0.005 3 8.9 5.3 1 23 205 227 205 228 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF430-201 - 570 4.2e-33 111.2 80.3 2 12 0.00017 0.1 13.5 0.8 1 23 233 255 233 256 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF430-201 - 570 4.2e-33 111.2 80.3 3 12 1.6e-05 0.0098 16.7 0.6 1 23 261 283 261 284 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF430-201 - 570 4.2e-33 111.2 80.3 4 12 1.4e-05 0.0084 16.9 2.2 1 23 289 311 289 312 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF430-201 - 570 4.2e-33 111.2 80.3 5 12 7.2e-05 0.043 14.7 0.9 1 23 317 339 317 340 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF430-201 - 570 4.2e-33 111.2 80.3 6 12 4.5e-05 0.027 15.3 0.2 1 23 345 367 345 368 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF430-201 - 570 4.2e-33 111.2 80.3 7 12 0.00089 0.53 11.3 1.0 1 23 373 395 373 396 0.91 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF430-201 - 570 4.2e-33 111.2 80.3 8 12 0.00028 0.17 12.8 0.6 1 23 401 423 401 424 0.91 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF430-201 - 570 4.2e-33 111.2 80.3 9 12 3.1e-05 0.018 15.8 0.2 1 23 429 451 429 452 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF430-201 - 570 4.2e-33 111.2 80.3 10 12 0.00013 0.075 13.9 0.3 1 23 457 479 457 480 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF430-201 - 570 4.2e-33 111.2 80.3 11 12 2.5e-05 0.015 16.1 0.5 1 23 485 507 485 508 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF430-201 - 570 4.2e-33 111.2 80.3 12 12 0.051 30 5.8 0.1 6 23 518 535 515 536 0.89 C2H2-type zinc finger KRAB PF01352.27 42 ZNF430-201 - 570 2.3e-23 81.5 0.2 1 1 7.3e-26 4.4e-23 80.7 0.2 1 42 34 75 34 75 0.98 KRAB box zf-C2H2_6 PF13912.6 27 ZNF430-201 - 570 5.1e-21 74.2 84.2 1 12 0.0017 1 9.4 4.0 2 24 205 227 205 230 0.92 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF430-201 - 570 5.1e-21 74.2 84.2 2 12 0.00052 0.31 11.1 0.4 2 24 233 255 232 258 0.87 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF430-201 - 570 5.1e-21 74.2 84.2 3 12 0.0022 1.3 9.1 1.1 2 24 261 283 261 286 0.90 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF430-201 - 570 5.1e-21 74.2 84.2 4 12 4.1e-05 0.024 14.6 2.0 2 24 289 311 289 314 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF430-201 - 570 5.1e-21 74.2 84.2 5 12 0.00074 0.44 10.6 0.7 2 24 317 339 317 342 0.92 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF430-201 - 570 5.1e-21 74.2 84.2 6 12 0.00086 0.51 10.4 0.5 2 24 345 367 345 369 0.90 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF430-201 - 570 5.1e-21 74.2 84.2 7 12 0.001 0.62 10.1 1.4 2 24 373 395 373 398 0.92 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF430-201 - 570 5.1e-21 74.2 84.2 8 12 0.0031 1.9 8.6 1.1 2 24 401 423 400 426 0.89 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF430-201 - 570 5.1e-21 74.2 84.2 9 12 0.00023 0.14 12.2 0.4 2 24 429 451 429 454 0.92 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF430-201 - 570 5.1e-21 74.2 84.2 10 12 0.0014 0.82 9.8 0.4 2 21 457 476 457 480 0.87 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF430-201 - 570 5.1e-21 74.2 84.2 11 12 5.6e-07 0.00033 20.6 1.2 2 24 485 507 485 508 0.98 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF430-201 - 570 5.1e-21 74.2 84.2 12 12 1.7 1e+03 -0.1 0.1 6 21 517 532 517 535 0.79 C2H2-type zinc finger XPA_N PF01286.18 32 ZNF430-201 - 570 2.9e-14 52.8 57.2 1 13 0.79 4.7e+02 0.9 3.5 3 12 206 215 204 216 0.90 XPA protein N-terminal XPA_N PF01286.18 32 ZNF430-201 - 570 2.9e-14 52.8 57.2 2 13 0.08 48 4.1 0.2 3 11 234 242 233 244 0.88 XPA protein N-terminal XPA_N PF01286.18 32 ZNF430-201 - 570 2.9e-14 52.8 57.2 3 13 0.0021 1.3 9.2 0.2 3 14 262 273 260 280 0.86 XPA protein N-terminal XPA_N PF01286.18 32 ZNF430-201 - 570 2.9e-14 52.8 57.2 4 13 0.0014 0.81 9.8 0.1 3 15 290 302 288 308 0.82 XPA protein N-terminal XPA_N PF01286.18 32 ZNF430-201 - 570 2.9e-14 52.8 57.2 5 13 0.0053 3.2 7.9 0.0 3 15 318 330 316 336 0.82 XPA protein N-terminal XPA_N PF01286.18 32 ZNF430-201 - 570 2.9e-14 52.8 57.2 6 13 0.00068 0.41 10.7 0.2 3 14 346 357 344 364 0.86 XPA protein N-terminal XPA_N PF01286.18 32 ZNF430-201 - 570 2.9e-14 52.8 57.2 7 13 0.003 1.8 8.7 0.2 3 17 374 389 372 391 0.76 XPA protein N-terminal XPA_N PF01286.18 32 ZNF430-201 - 570 2.9e-14 52.8 57.2 8 13 0.0078 4.7 7.4 0.2 3 14 402 413 401 418 0.86 XPA protein N-terminal XPA_N PF01286.18 32 ZNF430-201 - 570 2.9e-14 52.8 57.2 9 13 0.0061 3.6 7.7 0.2 3 14 430 441 428 445 0.91 XPA protein N-terminal XPA_N PF01286.18 32 ZNF430-201 - 570 2.9e-14 52.8 57.2 10 13 0.0023 1.4 9.0 0.1 3 14 458 469 456 470 0.90 XPA protein N-terminal XPA_N PF01286.18 32 ZNF430-201 - 570 2.9e-14 52.8 57.2 11 13 0.0063 3.8 7.6 0.3 3 12 486 495 484 500 0.90 XPA protein N-terminal XPA_N PF01286.18 32 ZNF430-201 - 570 2.9e-14 52.8 57.2 12 13 0.35 2.1e+02 2.1 0.1 5 14 516 525 516 532 0.86 XPA protein N-terminal XPA_N PF01286.18 32 ZNF430-201 - 570 2.9e-14 52.8 57.2 13 13 3.6 2.2e+03 -1.2 0.0 3 14 542 553 540 554 0.89 XPA protein N-terminal zf-C2H2_jaz PF12171.8 27 ZNF430-201 - 570 2.5e-13 49.9 55.0 1 12 0.72 4.3e+02 1.4 1.8 2 11 205 214 204 225 0.87 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF430-201 - 570 2.5e-13 49.9 55.0 2 12 0.29 1.7e+02 2.6 0.1 4 12 235 243 232 252 0.89 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF430-201 - 570 2.5e-13 49.9 55.0 3 12 0.0029 1.7 9.0 0.1 2 21 261 280 260 281 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF430-201 - 570 2.5e-13 49.9 55.0 4 12 6.4e-05 0.038 14.3 0.1 2 22 289 309 288 309 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF430-201 - 570 2.5e-13 49.9 55.0 5 12 0.0024 1.4 9.3 0.0 2 21 317 336 316 337 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF430-201 - 570 2.5e-13 49.9 55.0 6 12 0.0014 0.81 10.0 0.1 2 21 345 364 344 365 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF430-201 - 570 2.5e-13 49.9 55.0 7 12 0.41 2.5e+02 2.1 1.0 2 11 373 382 372 392 0.82 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF430-201 - 570 2.5e-13 49.9 55.0 8 12 0.0023 1.4 9.3 0.1 2 22 401 421 401 421 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF430-201 - 570 2.5e-13 49.9 55.0 9 12 0.0013 0.77 10.1 0.2 2 21 429 448 428 449 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF430-201 - 570 2.5e-13 49.9 55.0 10 12 0.027 16 5.9 0.1 2 20 457 475 456 476 0.79 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF430-201 - 570 2.5e-13 49.9 55.0 11 12 0.092 55 4.2 0.9 2 20 485 503 484 507 0.77 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF430-201 - 570 2.5e-13 49.9 55.0 12 12 0.076 45 4.5 0.1 6 21 517 532 516 533 0.92 Zinc-finger double-stranded RNA-binding Zn-ribbon_8 PF09723.10 40 ZNF430-201 - 570 2.8e-13 49.7 68.6 1 11 0.14 84 3.4 0.5 6 15 205 214 204 225 0.86 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF430-201 - 570 2.8e-13 49.7 68.6 2 11 9.1e-06 0.0054 16.8 3.7 6 36 233 270 232 274 0.88 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF430-201 - 570 2.8e-13 49.7 68.6 3 11 0.0044 2.6 8.2 0.5 6 17 261 272 259 281 0.84 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF430-201 - 570 2.8e-13 49.7 68.6 4 11 0.00012 0.072 13.2 6.8 6 37 289 327 288 328 0.83 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF430-201 - 570 2.8e-13 49.7 68.6 5 11 0.00044 0.27 11.4 6.0 6 34 317 352 315 353 0.87 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF430-201 - 570 2.8e-13 49.7 68.6 6 11 0.00051 0.31 11.2 7.0 6 35 345 381 344 385 0.83 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF430-201 - 570 2.8e-13 49.7 68.6 7 11 0.011 6.5 7.0 1.2 6 18 373 385 372 391 0.87 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF430-201 - 570 2.8e-13 49.7 68.6 8 11 0.00017 0.1 12.7 4.9 6 34 401 436 400 439 0.90 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF430-201 - 570 2.8e-13 49.7 68.6 9 11 0.00013 0.078 13.1 5.7 6 38 429 468 427 469 0.85 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF430-201 - 570 2.8e-13 49.7 68.6 10 11 0.00043 0.26 11.4 5.5 6 34 457 492 455 493 0.79 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF430-201 - 570 2.8e-13 49.7 68.6 11 11 0.0012 0.73 10.0 0.6 6 20 485 499 484 507 0.83 Zinc ribbon domain zf_UBZ PF18439.1 32 ZNF430-201 - 570 1.2e-12 47.2 53.9 1 13 1.1 6.7e+02 0.0 0.0 24 29 112 117 112 118 0.96 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF430-201 - 570 1.2e-12 47.2 53.9 2 13 0.12 71 3.1 1.0 3 12 205 214 203 224 0.78 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF430-201 - 570 1.2e-12 47.2 53.9 3 13 0.0028 1.7 8.3 0.1 1 12 231 242 231 247 0.89 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF430-201 - 570 1.2e-12 47.2 53.9 4 13 0.0014 0.86 9.2 0.2 3 20 261 279 259 280 0.87 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF430-201 - 570 1.2e-12 47.2 53.9 5 13 0.0029 1.7 8.3 0.3 3 20 289 307 287 308 0.79 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF430-201 - 570 1.2e-12 47.2 53.9 6 13 0.023 14 5.4 0.2 3 18 317 333 315 336 0.76 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF430-201 - 570 1.2e-12 47.2 53.9 7 13 0.0017 0.99 9.1 0.2 3 20 345 363 343 364 0.86 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF430-201 - 570 1.2e-12 47.2 53.9 8 13 0.014 8.4 6.1 0.1 3 12 373 382 371 389 0.87 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF430-201 - 570 1.2e-12 47.2 53.9 9 13 0.017 10 5.8 0.1 3 12 401 410 399 420 0.82 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF430-201 - 570 1.2e-12 47.2 53.9 10 13 0.0015 0.92 9.2 0.1 3 20 429 447 427 448 0.85 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF430-201 - 570 1.2e-12 47.2 53.9 11 13 0.0028 1.7 8.3 0.1 3 20 457 475 455 476 0.84 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF430-201 - 570 1.2e-12 47.2 53.9 12 13 0.0062 3.7 7.2 0.2 3 15 485 497 483 504 0.78 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF430-201 - 570 1.2e-12 47.2 53.9 13 13 6.4 3.8e+03 -2.4 0.0 7 20 517 531 517 532 0.76 Ubiquitin-Binding Zinc Finger zf-C2H2_11 PF16622.5 29 ZNF430-201 - 570 1.4e-08 34.3 43.8 1 12 5 3e+03 -1.9 3.2 5 26 205 226 203 227 0.87 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF430-201 - 570 1.4e-08 34.3 43.8 2 12 1.2e-05 0.0072 16.1 0.1 2 26 230 254 229 255 0.96 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF430-201 - 570 1.4e-08 34.3 43.8 3 12 0.075 45 3.9 0.1 5 26 261 282 258 283 0.80 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF430-201 - 570 1.4e-08 34.3 43.8 4 12 0.063 38 4.2 0.2 5 26 289 310 286 311 0.80 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF430-201 - 570 1.4e-08 34.3 43.8 5 12 0.012 6.9 6.5 0.2 5 25 317 337 314 339 0.78 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF430-201 - 570 1.4e-08 34.3 43.8 6 12 0.047 28 4.6 0.0 5 26 345 366 342 367 0.83 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF430-201 - 570 1.4e-08 34.3 43.8 7 12 0.17 1e+02 2.8 0.1 5 23 373 391 370 395 0.73 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF430-201 - 570 1.4e-08 34.3 43.8 8 12 0.011 6.8 6.5 0.1 5 26 401 422 399 423 0.93 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF430-201 - 570 1.4e-08 34.3 43.8 9 12 0.1 61 3.5 0.0 5 23 429 447 426 451 0.75 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF430-201 - 570 1.4e-08 34.3 43.8 10 12 0.088 53 3.7 0.0 5 24 457 476 454 479 0.79 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF430-201 - 570 1.4e-08 34.3 43.8 11 12 0.1 61 3.5 0.1 5 23 485 503 482 507 0.78 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF430-201 - 570 1.4e-08 34.3 43.8 12 12 0.29 1.7e+02 2.0 0.0 3 26 511 534 510 535 0.87 zinc-finger C2H2-type # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF430-201.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF430-201.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF430-201.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF430-201.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF430-201.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:06:16 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF430-202.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF430-202.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF430-202.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF430-202.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF430-202.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:06:17 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- KRAB PF01352.27 42 ZNF430-203 - 108 2.1e-24 84.9 0.2 1 1 3.3e-28 3e-24 84.4 0.2 1 42 34 75 34 75 0.98 KRAB box # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF430-203.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF430-203.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF430-203.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF430-203.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF430-203.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:06:17 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- KRAB PF01352.27 42 ZNF430-204 - 105 2e-24 85.0 0.2 1 1 1.6e-28 2.8e-24 84.5 0.2 1 42 34 75 34 75 0.98 KRAB box # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF430-204.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF430-204.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF430-204.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF430-204.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF430-204.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:06:17 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF430-205.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF430-205.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF430-205.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF430-205.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF430-205.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:06:18 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- KRAB PF01352.27 42 ZNF430-206 - 113 2.3e-24 84.7 0.2 1 1 3.7e-28 3.3e-24 84.3 0.2 1 42 34 75 34 75 0.98 KRAB box # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF430-206.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF430-206.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF430-206.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF430-206.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF430-206.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:06:18 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZNF431-201 - 576 8.5e-103 332.6 106.9 1 14 3.6 2.7e+03 -0.9 0.3 10 24 171 185 169 187 0.78 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF431-201 - 576 8.5e-103 332.6 106.9 2 14 1.3e-08 9.5e-06 25.8 4.8 3 24 192 213 190 213 0.97 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF431-201 - 576 8.5e-103 332.6 106.9 3 14 1.5e-08 1.1e-05 25.6 1.1 1 25 218 242 218 242 0.97 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF431-201 - 576 8.5e-103 332.6 106.9 4 14 1.6e-12 1.2e-09 38.1 1.9 2 26 247 271 246 271 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF431-201 - 576 8.5e-103 332.6 106.9 5 14 2.7e-10 2e-07 31.1 0.6 2 25 275 298 274 299 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF431-201 - 576 8.5e-103 332.6 106.9 6 14 7.8e-11 5.8e-08 32.8 1.4 1 25 302 326 302 327 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF431-201 - 576 8.5e-103 332.6 106.9 7 14 1.7e-08 1.3e-05 25.4 1.0 2 25 331 354 330 355 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF431-201 - 576 8.5e-103 332.6 106.9 8 14 2.9e-09 2.2e-06 27.8 1.0 2 25 359 382 358 382 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF431-201 - 576 8.5e-103 332.6 106.9 9 14 7.6e-12 5.7e-09 36.0 1.3 2 25 387 410 386 411 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF431-201 - 576 8.5e-103 332.6 106.9 10 14 9.6e-11 7.2e-08 32.5 0.9 1 25 414 438 414 439 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF431-201 - 576 8.5e-103 332.6 106.9 11 14 5.2e-11 3.9e-08 33.4 0.3 2 25 443 466 442 467 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF431-201 - 576 8.5e-103 332.6 106.9 12 14 2.7e-11 2e-08 34.3 1.5 2 25 471 494 471 495 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF431-201 - 576 8.5e-103 332.6 106.9 13 14 1.2e-10 8.6e-08 32.3 0.6 1 25 498 522 498 523 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF431-201 - 576 8.5e-103 332.6 106.9 14 14 8.5e-09 6.4e-06 26.4 1.5 2 25 527 550 526 551 0.95 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZNF431-201 - 576 1.1e-67 220.9 91.1 1 13 9.5e-05 0.071 13.6 6.7 1 23 204 226 204 226 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF431-201 - 576 1.1e-67 220.9 91.1 2 13 1.5e-06 0.0011 19.2 0.8 1 23 232 254 232 254 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF431-201 - 576 1.1e-67 220.9 91.1 3 13 5.1e-08 3.8e-05 23.9 0.5 1 23 260 282 260 282 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF431-201 - 576 1.1e-67 220.9 91.1 4 13 1.8e-08 1.3e-05 25.3 1.5 1 23 288 310 288 310 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF431-201 - 576 1.1e-67 220.9 91.1 5 13 4e-07 0.0003 21.1 0.8 1 23 316 338 316 338 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF431-201 - 576 1.1e-67 220.9 91.1 6 13 1.9e-07 0.00014 22.1 1.2 1 23 344 366 344 366 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF431-201 - 576 1.1e-67 220.9 91.1 7 13 1.3e-06 0.00096 19.5 0.6 1 23 372 394 372 394 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF431-201 - 576 1.1e-67 220.9 91.1 8 13 6.8e-08 5.1e-05 23.5 0.4 1 23 400 422 400 422 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF431-201 - 576 1.1e-67 220.9 91.1 9 13 1.4e-07 0.0001 22.6 0.1 1 23 428 450 428 450 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF431-201 - 576 1.1e-67 220.9 91.1 10 13 4.5e-07 0.00034 20.9 0.5 1 23 456 478 456 478 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF431-201 - 576 1.1e-67 220.9 91.1 11 13 2.7e-09 2e-06 27.9 0.5 1 23 484 506 484 506 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF431-201 - 576 1.1e-67 220.9 91.1 12 13 6.3e-09 4.7e-06 26.8 0.9 1 23 512 534 512 534 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF431-201 - 576 1.1e-67 220.9 91.1 13 13 0.00038 0.29 11.7 0.2 1 18 540 557 540 557 0.94 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZNF431-201 - 576 1.2e-36 122.1 85.8 1 13 0.00056 0.42 11.6 5.2 1 23 204 226 204 227 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF431-201 - 576 1.2e-36 122.1 85.8 2 13 0.00095 0.71 10.9 0.9 1 23 232 254 232 255 0.85 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF431-201 - 576 1.2e-36 122.1 85.8 3 13 2.8e-05 0.021 15.6 0.6 1 23 260 282 260 283 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF431-201 - 576 1.2e-36 122.1 85.8 4 13 5.3e-05 0.04 14.8 1.0 1 23 288 310 288 311 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF431-201 - 576 1.2e-36 122.1 85.8 5 13 3e-05 0.022 15.6 0.5 1 23 316 338 316 339 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF431-201 - 576 1.2e-36 122.1 85.8 6 13 0.00034 0.26 12.2 0.9 1 23 344 366 344 367 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF431-201 - 576 1.2e-36 122.1 85.8 7 13 0.00023 0.17 12.8 0.6 1 23 372 394 372 395 0.91 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF431-201 - 576 1.2e-36 122.1 85.8 8 13 3.2e-05 0.024 15.4 0.3 1 23 400 422 400 423 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF431-201 - 576 1.2e-36 122.1 85.8 9 13 5.8e-05 0.044 14.6 0.2 1 23 428 450 428 451 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF431-201 - 576 1.2e-36 122.1 85.8 10 13 4.7e-05 0.035 14.9 0.5 1 23 456 478 456 479 0.86 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF431-201 - 576 1.2e-36 122.1 85.8 11 13 2e-05 0.015 16.1 0.4 1 23 484 506 484 507 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF431-201 - 576 1.2e-36 122.1 85.8 12 13 7.8e-06 0.0059 17.4 0.8 1 23 512 534 512 535 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF431-201 - 576 1.2e-36 122.1 85.8 13 13 0.067 50 5.1 0.2 1 16 540 555 540 557 0.85 C2H2-type zinc finger KRAB PF01352.27 42 ZNF431-201 - 576 6.8e-23 80.1 0.4 1 1 1.7e-25 1.2e-22 79.2 0.4 2 42 35 75 34 75 0.98 KRAB box zf-C2H2_6 PF13912.6 27 ZNF431-201 - 576 2.9e-19 68.6 100.9 1 13 0.0083 6.2 6.9 4.7 2 24 204 226 204 228 0.86 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF431-201 - 576 2.9e-19 68.6 100.9 2 13 0.0015 1.1 9.3 0.9 2 24 232 254 231 257 0.90 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF431-201 - 576 2.9e-19 68.6 100.9 3 13 0.0011 0.83 9.7 0.8 2 24 260 282 260 285 0.89 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF431-201 - 576 2.9e-19 68.6 100.9 4 13 0.00017 0.13 12.3 0.9 2 24 288 310 288 313 0.92 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF431-201 - 576 2.9e-19 68.6 100.9 5 13 0.0087 6.5 6.9 1.2 2 12 316 326 316 338 0.80 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF431-201 - 576 2.9e-19 68.6 100.9 6 13 5.5e-05 0.041 13.9 0.7 2 24 344 366 344 369 0.92 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF431-201 - 576 2.9e-19 68.6 100.9 7 13 0.0017 1.3 9.1 1.0 2 24 372 394 371 397 0.88 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF431-201 - 576 2.9e-19 68.6 100.9 8 13 0.00016 0.12 12.4 0.6 2 21 400 419 400 423 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF431-201 - 576 2.9e-19 68.6 100.9 9 13 0.00032 0.24 11.5 0.2 2 24 428 450 428 453 0.90 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF431-201 - 576 2.9e-19 68.6 100.9 10 13 0.00096 0.72 9.9 0.7 2 24 456 478 456 481 0.90 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF431-201 - 576 2.9e-19 68.6 100.9 11 13 1.1e-05 0.0084 16.1 0.6 2 24 484 506 484 509 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF431-201 - 576 2.9e-19 68.6 100.9 12 13 0.00061 0.46 10.6 1.9 2 24 512 534 511 537 0.90 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF431-201 - 576 2.9e-19 68.6 100.9 13 13 0.017 13 5.9 0.2 2 12 540 550 540 557 0.89 C2H2-type zinc finger XPA_N PF01286.18 32 ZNF431-201 - 576 3.6e-19 68.5 65.2 1 13 0.22 1.6e+02 2.4 2.8 3 12 205 214 203 215 0.91 XPA protein N-terminal XPA_N PF01286.18 32 ZNF431-201 - 576 3.6e-19 68.5 65.2 2 13 0.014 10 6.2 0.3 3 12 233 242 232 243 0.89 XPA protein N-terminal XPA_N PF01286.18 32 ZNF431-201 - 576 3.6e-19 68.5 65.2 3 13 0.00044 0.33 11.0 0.3 3 14 261 272 259 279 0.86 XPA protein N-terminal XPA_N PF01286.18 32 ZNF431-201 - 576 3.6e-19 68.5 65.2 4 13 0.0013 0.98 9.5 0.1 3 15 289 301 287 307 0.82 XPA protein N-terminal XPA_N PF01286.18 32 ZNF431-201 - 576 3.6e-19 68.5 65.2 5 13 0.00064 0.47 10.5 0.2 3 14 317 328 315 334 0.86 XPA protein N-terminal XPA_N PF01286.18 32 ZNF431-201 - 576 3.6e-19 68.5 65.2 6 13 0.003 2.3 8.4 0.3 3 18 345 361 343 362 0.79 XPA protein N-terminal XPA_N PF01286.18 32 ZNF431-201 - 576 3.6e-19 68.5 65.2 7 13 0.0063 4.7 7.3 0.2 3 14 373 384 372 389 0.86 XPA protein N-terminal XPA_N PF01286.18 32 ZNF431-201 - 576 3.6e-19 68.5 65.2 8 13 0.023 17 5.5 0.1 3 14 401 412 399 418 0.87 XPA protein N-terminal XPA_N PF01286.18 32 ZNF431-201 - 576 3.6e-19 68.5 65.2 9 13 0.0019 1.4 9.0 0.2 3 14 429 440 427 442 0.90 XPA protein N-terminal XPA_N PF01286.18 32 ZNF431-201 - 576 3.6e-19 68.5 65.2 10 13 0.00022 0.17 12.0 0.2 3 19 457 473 455 475 0.85 XPA protein N-terminal XPA_N PF01286.18 32 ZNF431-201 - 576 3.6e-19 68.5 65.2 11 13 0.0015 1.1 9.3 0.2 3 14 485 496 483 501 0.89 XPA protein N-terminal XPA_N PF01286.18 32 ZNF431-201 - 576 3.6e-19 68.5 65.2 12 13 0.00084 0.63 10.1 0.3 3 14 513 524 512 530 0.89 XPA protein N-terminal XPA_N PF01286.18 32 ZNF431-201 - 576 3.6e-19 68.5 65.2 13 13 0.01 7.8 6.6 0.5 3 14 541 552 539 553 0.91 XPA protein N-terminal zf-C2H2_jaz PF12171.8 27 ZNF431-201 - 576 2.8e-18 65.7 62.1 1 14 7.9 5.9e+03 -2.3 0.1 7 12 178 183 177 183 0.83 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF431-201 - 576 2.8e-18 65.7 62.1 2 14 5.8 4.4e+03 -1.8 0.9 2 11 204 213 203 213 0.89 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF431-201 - 576 2.8e-18 65.7 62.1 3 14 0.31 2.3e+02 2.2 0.2 4 12 234 242 231 252 0.82 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF431-201 - 576 2.8e-18 65.7 62.1 4 14 0.00034 0.26 11.6 0.1 2 21 260 279 259 280 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF431-201 - 576 2.8e-18 65.7 62.1 5 14 0.00074 0.56 10.6 0.1 2 21 288 307 287 308 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF431-201 - 576 2.8e-18 65.7 62.1 6 14 0.0026 1.9 8.8 0.1 2 20 316 334 315 335 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF431-201 - 576 2.8e-18 65.7 62.1 7 14 0.0052 3.9 7.9 1.2 2 15 344 357 343 363 0.77 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF431-201 - 576 2.8e-18 65.7 62.1 8 14 0.0011 0.79 10.1 0.1 2 22 372 392 371 392 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF431-201 - 576 2.8e-18 65.7 62.1 9 14 0.00025 0.19 12.1 0.1 2 20 400 418 399 419 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF431-201 - 576 2.8e-18 65.7 62.1 10 14 0.0029 2.2 8.7 0.0 2 21 428 447 427 448 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF431-201 - 576 2.8e-18 65.7 62.1 11 14 0.008 6 7.3 0.1 2 22 456 476 455 476 0.90 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF431-201 - 576 2.8e-18 65.7 62.1 12 14 0.00021 0.16 12.3 0.2 2 21 484 503 483 504 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF431-201 - 576 2.8e-18 65.7 62.1 13 14 0.00068 0.51 10.7 0.4 2 22 512 532 511 532 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF431-201 - 576 2.8e-18 65.7 62.1 14 14 0.15 1.1e+02 3.2 0.3 2 13 540 551 539 557 0.80 Zinc-finger double-stranded RNA-binding zf_UBZ PF18439.1 32 ZNF431-201 - 576 8.3e-16 57.3 57.4 1 13 0.035 26 4.5 0.7 3 12 204 213 202 223 0.83 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF431-201 - 576 8.3e-16 57.3 57.4 2 13 0.0028 2.1 8.0 0.1 1 12 230 241 230 249 0.90 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF431-201 - 576 8.3e-16 57.3 57.4 3 13 0.0016 1.2 8.8 0.2 3 20 260 278 258 279 0.87 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF431-201 - 576 8.3e-16 57.3 57.4 4 13 0.0052 3.9 7.2 0.2 3 20 288 306 286 307 0.78 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF431-201 - 576 8.3e-16 57.3 57.4 5 13 0.0021 1.5 8.4 0.2 3 20 316 334 314 335 0.82 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF431-201 - 576 8.3e-16 57.3 57.4 6 13 0.026 20 4.9 0.2 3 12 344 353 342 360 0.86 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF431-201 - 576 8.3e-16 57.3 57.4 7 13 0.0064 4.8 6.9 0.1 2 12 371 381 370 391 0.82 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF431-201 - 576 8.3e-16 57.3 57.4 8 13 0.013 9.5 5.9 0.1 3 20 400 418 398 419 0.88 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF431-201 - 576 8.3e-16 57.3 57.4 9 13 0.0014 1 9.0 0.1 3 20 428 446 426 447 0.88 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF431-201 - 576 8.3e-16 57.3 57.4 10 13 0.00086 0.64 9.7 0.2 3 20 456 474 454 475 0.80 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF431-201 - 576 8.3e-16 57.3 57.4 11 13 0.0044 3.3 7.4 0.1 3 16 484 498 482 503 0.77 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF431-201 - 576 8.3e-16 57.3 57.4 12 13 0.0012 0.92 9.2 0.2 2 17 511 527 510 531 0.79 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF431-201 - 576 8.3e-16 57.3 57.4 13 13 0.071 53 3.5 0.2 3 14 540 551 538 554 0.83 Ubiquitin-Binding Zinc Finger zf-C2H2_11 PF16622.5 29 ZNF431-201 - 576 1.1e-14 53.9 43.9 1 12 0.097 73 3.3 4.9 5 26 204 225 202 226 0.94 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF431-201 - 576 1.1e-14 53.9 43.9 2 12 8.6e-05 0.064 13.0 0.1 2 26 229 253 228 254 0.93 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF431-201 - 576 1.1e-14 53.9 43.9 3 12 0.064 48 3.8 0.1 5 26 260 281 257 282 0.80 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF431-201 - 576 1.1e-14 53.9 43.9 4 12 0.061 45 3.9 0.1 5 24 288 307 285 310 0.76 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF431-201 - 576 1.1e-14 53.9 43.9 5 12 0.0015 1.1 9.0 0.1 5 26 316 337 313 338 0.94 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF431-201 - 576 1.1e-14 53.9 43.9 6 12 1.8 1.3e+03 -0.8 0.1 5 25 344 364 342 366 0.72 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF431-201 - 576 1.1e-14 53.9 43.9 7 12 0.0012 0.91 9.3 0.1 3 26 370 393 369 394 0.92 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF431-201 - 576 1.1e-14 53.9 43.9 8 12 0.7 5.3e+02 0.5 0.0 5 23 400 418 397 422 0.75 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF431-201 - 576 1.1e-14 53.9 43.9 9 12 0.041 31 4.5 0.0 5 26 428 449 425 450 0.83 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF431-201 - 576 1.1e-14 53.9 43.9 10 12 0.0052 3.9 7.3 0.1 5 26 456 477 453 478 0.89 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF431-201 - 576 1.1e-14 53.9 43.9 11 12 0.0076 5.7 6.8 0.0 5 26 484 505 481 506 0.90 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF431-201 - 576 1.1e-14 53.9 43.9 12 12 0.00019 0.14 11.9 0.2 3 26 510 533 509 534 0.93 zinc-finger C2H2-type Zn-ribbon_8 PF09723.10 40 ZNF431-201 - 576 6e-14 51.9 79.4 1 13 0.02 15 5.8 0.4 6 16 204 214 203 226 0.81 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF431-201 - 576 6e-14 51.9 79.4 2 13 0.00045 0.34 11.1 5.8 6 36 232 269 230 272 0.83 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF431-201 - 576 6e-14 51.9 79.4 3 13 0.00094 0.7 10.1 6.5 6 37 260 298 259 299 0.85 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF431-201 - 576 6e-14 51.9 79.4 4 13 0.00021 0.16 12.1 6.5 6 35 288 324 286 327 0.85 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF431-201 - 576 6e-14 51.9 79.4 5 13 0.0026 2 8.6 7.1 6 37 316 354 315 356 0.77 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF431-201 - 576 6e-14 51.9 79.4 6 13 0.0096 7.2 6.8 1.0 6 19 344 357 343 364 0.88 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF431-201 - 576 6e-14 51.9 79.4 7 13 9.3e-05 0.069 13.3 3.9 6 35 372 408 371 412 0.88 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF431-201 - 576 6e-14 51.9 79.4 8 13 0.00012 0.086 13.0 4.7 6 38 400 439 398 441 0.88 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF431-201 - 576 6e-14 51.9 79.4 9 13 0.00027 0.2 11.8 6.3 6 35 428 464 426 468 0.85 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF431-201 - 576 6e-14 51.9 79.4 10 13 0.00023 0.17 12.0 6.5 6 38 456 495 455 497 0.85 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF431-201 - 576 6e-14 51.9 79.4 11 13 0.0032 2.4 8.3 0.7 6 17 484 495 483 504 0.84 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF431-201 - 576 6e-14 51.9 79.4 12 13 0.00048 0.36 11.0 5.9 6 34 512 547 511 552 0.89 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF431-201 - 576 6e-14 51.9 79.4 13 13 0.038 28 4.9 0.7 6 17 540 551 539 559 0.84 Zinc ribbon domain # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF431-201.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF431-201.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF431-201.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF431-201.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF431-201.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:06:18 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF431-202.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF431-202.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF431-202.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF431-202.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF431-202.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:06:19 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF431-203.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF431-203.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF431-203.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF431-203.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF431-203.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:06:19 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF431-204.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF431-204.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF431-204.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF431-204.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF431-204.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:06:19 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF431-205.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF431-205.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF431-205.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF431-205.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF431-205.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:06:20 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- KRAB PF01352.27 42 ZNF431-206 - 122 7.3e-24 83.1 0.4 1 1 6.1e-28 1.1e-23 82.6 0.4 2 42 35 75 34 75 0.98 KRAB box # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF431-206.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF431-206.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF431-206.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF431-206.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF431-206.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:06:20 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZNF431-207 - 485 6.3e-104 336.2 106.9 1 14 3.2 2.2e+03 -0.6 0.3 10 24 80 94 78 96 0.78 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF431-207 - 485 6.3e-104 336.2 106.9 2 14 1.1e-08 7.8e-06 26.1 4.8 3 24 101 122 99 122 0.97 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF431-207 - 485 6.3e-104 336.2 106.9 3 14 1.3e-08 9.2e-06 25.9 1.1 1 25 127 151 127 151 0.97 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF431-207 - 485 6.3e-104 336.2 106.9 4 14 1.4e-12 9.8e-10 38.4 1.9 2 26 156 180 155 180 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF431-207 - 485 6.3e-104 336.2 106.9 5 14 2.4e-10 1.6e-07 31.4 0.6 2 25 184 207 183 208 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF431-207 - 485 6.3e-104 336.2 106.9 6 14 6.8e-11 4.7e-08 33.1 1.4 1 25 211 235 211 236 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF431-207 - 485 6.3e-104 336.2 106.9 7 14 1.5e-08 1e-05 25.7 1.0 2 25 240 263 239 264 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF431-207 - 485 6.3e-104 336.2 106.9 8 14 2.6e-09 1.8e-06 28.1 1.0 2 25 268 291 267 291 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF431-207 - 485 6.3e-104 336.2 106.9 9 14 6.7e-12 4.6e-09 36.3 1.3 2 25 296 319 295 320 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF431-207 - 485 6.3e-104 336.2 106.9 10 14 8.5e-11 5.8e-08 32.8 0.9 1 25 323 347 323 348 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF431-207 - 485 6.3e-104 336.2 106.9 11 14 4.6e-11 3.2e-08 33.6 0.3 2 25 352 375 351 376 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF431-207 - 485 6.3e-104 336.2 106.9 12 14 2.4e-11 1.6e-08 34.6 1.5 2 25 380 403 380 404 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF431-207 - 485 6.3e-104 336.2 106.9 13 14 1e-10 7e-08 32.6 0.6 1 25 407 431 407 432 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF431-207 - 485 6.3e-104 336.2 106.9 14 14 7.5e-09 5.2e-06 26.7 1.5 2 25 436 459 435 460 0.95 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZNF431-207 - 485 1.7e-66 217.1 98.6 1 13 8.4e-05 0.058 13.9 6.7 1 23 113 135 113 135 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF431-207 - 485 1.7e-66 217.1 98.6 2 13 1.4e-06 0.00093 19.5 0.8 1 23 141 163 141 163 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF431-207 - 485 1.7e-66 217.1 98.6 3 13 4.5e-08 3.1e-05 24.2 0.5 1 23 169 191 169 191 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF431-207 - 485 1.7e-66 217.1 98.6 4 13 1.6e-08 1.1e-05 25.6 1.5 1 23 197 219 197 219 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF431-207 - 485 1.7e-66 217.1 98.6 5 13 3.5e-07 0.00024 21.4 0.8 1 23 225 247 225 247 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF431-207 - 485 1.7e-66 217.1 98.6 6 13 1.6e-07 0.00011 22.4 1.2 1 23 253 275 253 275 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF431-207 - 485 1.7e-66 217.1 98.6 7 13 1.1e-06 0.00078 19.8 0.6 1 23 281 303 281 303 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF431-207 - 485 1.7e-66 217.1 98.6 8 13 6e-08 4.1e-05 23.8 0.4 1 23 309 331 309 331 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF431-207 - 485 1.7e-66 217.1 98.6 9 13 1.2e-07 8.3e-05 22.8 0.1 1 23 337 359 337 359 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF431-207 - 485 1.7e-66 217.1 98.6 10 13 4e-07 0.00027 21.2 0.5 1 23 365 387 365 387 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF431-207 - 485 1.7e-66 217.1 98.6 11 13 2.4e-09 1.6e-06 28.2 0.5 1 23 393 415 393 415 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF431-207 - 485 1.7e-66 217.1 98.6 12 13 5.6e-09 3.8e-06 27.0 0.9 1 23 421 443 421 443 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF431-207 - 485 1.7e-66 217.1 98.6 13 13 0.00034 0.24 12.0 0.2 1 18 449 466 449 466 0.94 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZNF431-207 - 485 8.9e-38 125.7 85.8 1 13 0.00049 0.34 11.9 5.2 1 23 113 135 113 136 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF431-207 - 485 8.9e-38 125.7 85.8 2 13 0.00084 0.58 11.2 0.9 1 23 141 163 141 164 0.85 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF431-207 - 485 8.9e-38 125.7 85.8 3 13 2.5e-05 0.017 15.9 0.6 1 23 169 191 169 192 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF431-207 - 485 8.9e-38 125.7 85.8 4 13 4.7e-05 0.032 15.0 1.0 1 23 197 219 197 220 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF431-207 - 485 8.9e-38 125.7 85.8 5 13 2.6e-05 0.018 15.8 0.5 1 23 225 247 225 248 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF431-207 - 485 8.9e-38 125.7 85.8 6 13 0.0003 0.21 12.5 0.9 1 23 253 275 253 276 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF431-207 - 485 8.9e-38 125.7 85.8 7 13 0.0002 0.14 13.1 0.6 1 23 281 303 281 304 0.91 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF431-207 - 485 8.9e-38 125.7 85.8 8 13 2.8e-05 0.02 15.7 0.3 1 23 309 331 309 332 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF431-207 - 485 8.9e-38 125.7 85.8 9 13 5.1e-05 0.035 14.9 0.2 1 23 337 359 337 360 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF431-207 - 485 8.9e-38 125.7 85.8 10 13 4.2e-05 0.029 15.2 0.5 1 23 365 387 365 388 0.86 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF431-207 - 485 8.9e-38 125.7 85.8 11 13 1.7e-05 0.012 16.4 0.4 1 23 393 415 393 416 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF431-207 - 485 8.9e-38 125.7 85.8 12 13 6.9e-06 0.0048 17.6 0.8 1 23 421 443 421 444 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF431-207 - 485 8.9e-38 125.7 85.8 13 13 0.06 41 5.4 0.2 1 16 449 464 449 466 0.85 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF431-207 - 485 2.1e-20 72.2 100.9 1 13 0.0073 5.1 7.2 4.8 2 24 113 135 113 137 0.86 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF431-207 - 485 2.1e-20 72.2 100.9 2 13 0.0013 0.91 9.6 0.9 2 24 141 163 140 166 0.90 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF431-207 - 485 2.1e-20 72.2 100.9 3 13 0.00099 0.68 10.0 0.8 2 24 169 191 169 194 0.90 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF431-207 - 485 2.1e-20 72.2 100.9 4 13 0.00015 0.11 12.6 1.0 2 24 197 219 197 222 0.92 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF431-207 - 485 2.1e-20 72.2 100.9 5 13 0.0078 5.4 7.1 1.2 2 12 225 235 225 247 0.80 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF431-207 - 485 2.1e-20 72.2 100.9 6 13 4.8e-05 0.033 14.2 0.7 2 24 253 275 253 278 0.92 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF431-207 - 485 2.1e-20 72.2 100.9 7 13 0.0015 1 9.4 1.0 2 24 281 303 280 306 0.88 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF431-207 - 485 2.1e-20 72.2 100.9 8 13 0.00015 0.1 12.7 0.6 2 21 309 328 309 332 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF431-207 - 485 2.1e-20 72.2 100.9 9 13 0.00028 0.19 11.8 0.2 2 24 337 359 337 362 0.90 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF431-207 - 485 2.1e-20 72.2 100.9 10 13 0.00085 0.59 10.2 0.7 2 24 365 387 365 390 0.90 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF431-207 - 485 2.1e-20 72.2 100.9 11 13 9.9e-06 0.0069 16.4 0.6 2 24 393 415 393 418 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF431-207 - 485 2.1e-20 72.2 100.9 12 13 0.00054 0.37 10.8 1.9 2 24 421 443 420 446 0.90 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF431-207 - 485 2.1e-20 72.2 100.9 13 13 0.015 11 6.2 0.2 2 12 449 459 449 466 0.89 C2H2-type zinc finger XPA_N PF01286.18 32 ZNF431-207 - 485 2.8e-20 72.1 65.2 1 13 0.19 1.3e+02 2.7 2.8 3 12 114 123 112 124 0.91 XPA protein N-terminal XPA_N PF01286.18 32 ZNF431-207 - 485 2.8e-20 72.1 65.2 2 13 0.012 8.6 6.5 0.3 3 12 142 151 141 152 0.89 XPA protein N-terminal XPA_N PF01286.18 32 ZNF431-207 - 485 2.8e-20 72.1 65.2 3 13 0.00039 0.27 11.3 0.3 3 14 170 181 168 188 0.86 XPA protein N-terminal XPA_N PF01286.18 32 ZNF431-207 - 485 2.8e-20 72.1 65.2 4 13 0.0012 0.8 9.8 0.1 3 15 198 210 196 216 0.82 XPA protein N-terminal XPA_N PF01286.18 32 ZNF431-207 - 485 2.8e-20 72.1 65.2 5 13 0.00057 0.39 10.8 0.2 3 14 226 237 224 243 0.86 XPA protein N-terminal XPA_N PF01286.18 32 ZNF431-207 - 485 2.8e-20 72.1 65.2 6 13 0.0027 1.9 8.6 0.3 3 18 254 270 252 271 0.79 XPA protein N-terminal XPA_N PF01286.18 32 ZNF431-207 - 485 2.8e-20 72.1 65.2 7 13 0.0056 3.9 7.6 0.2 3 14 282 293 281 298 0.86 XPA protein N-terminal XPA_N PF01286.18 32 ZNF431-207 - 485 2.8e-20 72.1 65.2 8 13 0.02 14 5.8 0.1 3 14 310 321 308 327 0.87 XPA protein N-terminal XPA_N PF01286.18 32 ZNF431-207 - 485 2.8e-20 72.1 65.2 9 13 0.0017 1.2 9.3 0.2 3 14 338 349 336 351 0.90 XPA protein N-terminal XPA_N PF01286.18 32 ZNF431-207 - 485 2.8e-20 72.1 65.2 10 13 0.0002 0.14 12.3 0.2 3 19 366 382 364 384 0.85 XPA protein N-terminal XPA_N PF01286.18 32 ZNF431-207 - 485 2.8e-20 72.1 65.2 11 13 0.0013 0.92 9.6 0.2 3 14 394 405 392 410 0.89 XPA protein N-terminal XPA_N PF01286.18 32 ZNF431-207 - 485 2.8e-20 72.1 65.2 12 13 0.00075 0.52 10.4 0.3 3 14 422 433 421 439 0.89 XPA protein N-terminal XPA_N PF01286.18 32 ZNF431-207 - 485 2.8e-20 72.1 65.2 13 13 0.0094 6.5 6.9 0.5 3 14 450 461 448 462 0.91 XPA protein N-terminal zf-C2H2_jaz PF12171.8 27 ZNF431-207 - 485 2.2e-19 69.2 62.1 1 14 7.1 4.9e+03 -2.0 0.1 7 12 87 92 86 92 0.83 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF431-207 - 485 2.2e-19 69.2 62.1 2 14 5.2 3.6e+03 -1.6 0.9 2 11 113 122 112 122 0.89 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF431-207 - 485 2.2e-19 69.2 62.1 3 14 0.28 1.9e+02 2.5 0.2 4 12 143 151 140 161 0.82 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF431-207 - 485 2.2e-19 69.2 62.1 4 14 0.0003 0.21 11.9 0.1 2 21 169 188 168 189 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF431-207 - 485 2.2e-19 69.2 62.1 5 14 0.00066 0.46 10.8 0.1 2 21 197 216 196 217 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF431-207 - 485 2.2e-19 69.2 62.1 6 14 0.0023 1.6 9.1 0.1 2 20 225 243 224 244 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF431-207 - 485 2.2e-19 69.2 62.1 7 14 0.0046 3.2 8.2 1.2 2 15 253 266 252 272 0.77 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF431-207 - 485 2.2e-19 69.2 62.1 8 14 0.00094 0.65 10.4 0.1 2 22 281 301 280 301 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF431-207 - 485 2.2e-19 69.2 62.1 9 14 0.00022 0.15 12.4 0.1 2 20 309 327 308 328 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF431-207 - 485 2.2e-19 69.2 62.1 10 14 0.0026 1.8 8.9 0.0 2 21 337 356 336 357 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF431-207 - 485 2.2e-19 69.2 62.1 11 14 0.0071 4.9 7.6 0.1 2 22 365 385 364 385 0.90 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF431-207 - 485 2.2e-19 69.2 62.1 12 14 0.00019 0.13 12.6 0.2 2 21 393 412 392 413 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF431-207 - 485 2.2e-19 69.2 62.1 13 14 0.0006 0.42 11.0 0.4 2 22 421 441 420 441 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF431-207 - 485 2.2e-19 69.2 62.1 14 14 0.14 94 3.5 0.3 2 13 449 460 448 466 0.80 Zinc-finger double-stranded RNA-binding zf_UBZ PF18439.1 32 ZNF431-207 - 485 6.7e-17 60.8 57.4 1 13 0.031 22 4.8 0.7 3 12 113 122 111 132 0.83 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF431-207 - 485 6.7e-17 60.8 57.4 2 13 0.0024 1.6 8.4 0.1 1 12 139 150 139 159 0.88 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF431-207 - 485 6.7e-17 60.8 57.4 3 13 0.0014 0.96 9.1 0.2 3 20 169 187 167 188 0.87 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF431-207 - 485 6.7e-17 60.8 57.4 4 13 0.0046 3.2 7.4 0.2 3 20 197 215 195 216 0.78 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF431-207 - 485 6.7e-17 60.8 57.4 5 13 0.0018 1.3 8.7 0.2 3 20 225 243 223 244 0.82 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF431-207 - 485 6.7e-17 60.8 57.4 6 13 0.023 16 5.2 0.2 3 12 253 262 251 269 0.86 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF431-207 - 485 6.7e-17 60.8 57.4 7 13 0.0057 3.9 7.1 0.1 2 12 280 290 279 300 0.82 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF431-207 - 485 6.7e-17 60.8 57.4 8 13 0.011 7.8 6.2 0.1 3 20 309 327 307 328 0.88 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF431-207 - 485 6.7e-17 60.8 57.4 9 13 0.0012 0.85 9.3 0.1 3 20 337 355 335 356 0.88 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF431-207 - 485 6.7e-17 60.8 57.4 10 13 0.00076 0.53 9.9 0.2 3 20 365 383 363 384 0.80 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF431-207 - 485 6.7e-17 60.8 57.4 11 13 0.0039 2.7 7.7 0.1 3 16 393 407 391 412 0.77 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF431-207 - 485 6.7e-17 60.8 57.4 12 13 0.0011 0.75 9.4 0.2 2 17 420 436 419 440 0.79 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF431-207 - 485 6.7e-17 60.8 57.4 13 13 0.064 44 3.8 0.2 3 14 449 460 447 463 0.83 Ubiquitin-Binding Zinc Finger zf-C2H2_11 PF16622.5 29 ZNF431-207 - 485 1.1e-15 57.1 43.9 1 12 0.086 60 3.5 4.9 5 26 113 134 111 135 0.94 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF431-207 - 485 1.1e-15 57.1 43.9 2 12 7.6e-05 0.052 13.3 0.1 2 26 138 162 137 163 0.93 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF431-207 - 485 1.1e-15 57.1 43.9 3 12 0.057 39 4.1 0.1 5 26 169 190 166 191 0.80 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF431-207 - 485 1.1e-15 57.1 43.9 4 12 0.054 37 4.2 0.1 5 24 197 216 194 219 0.76 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF431-207 - 485 1.1e-15 57.1 43.9 5 12 0.0013 0.92 9.3 0.1 5 26 225 246 222 247 0.94 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF431-207 - 485 1.1e-15 57.1 43.9 6 12 1.6 1.1e+03 -0.5 0.1 5 25 253 273 251 275 0.72 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF431-207 - 485 1.1e-15 57.1 43.9 7 12 0.0011 0.74 9.6 0.1 3 26 279 302 278 303 0.92 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF431-207 - 485 1.1e-15 57.1 43.9 8 12 0.62 4.3e+02 0.8 0.0 5 23 309 327 306 331 0.75 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF431-207 - 485 1.1e-15 57.1 43.9 9 12 0.036 25 4.7 0.0 5 26 337 358 334 359 0.84 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF431-207 - 485 1.1e-15 57.1 43.9 10 12 0.0046 3.2 7.6 0.1 5 26 365 386 362 387 0.89 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF431-207 - 485 1.1e-15 57.1 43.9 11 12 0.0067 4.6 7.1 0.0 5 26 393 414 390 415 0.90 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF431-207 - 485 1.1e-15 57.1 43.9 12 12 0.00017 0.12 12.2 0.2 3 26 419 442 418 443 0.93 zinc-finger C2H2-type Zn-ribbon_8 PF09723.10 40 ZNF431-207 - 485 1.7e-12 47.2 87.4 1 13 0.018 12 6.1 0.4 6 16 113 123 112 135 0.81 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF431-207 - 485 1.7e-12 47.2 87.4 2 13 0.00044 0.31 11.2 5.9 6 36 141 178 140 181 0.82 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF431-207 - 485 1.7e-12 47.2 87.4 3 13 0.00079 0.54 10.4 6.5 6 37 169 207 168 208 0.85 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF431-207 - 485 1.7e-12 47.2 87.4 4 13 0.00023 0.16 12.1 6.0 6 34 197 232 196 233 0.86 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF431-207 - 485 1.7e-12 47.2 87.4 5 13 0.002 1.4 9.1 6.7 6 36 225 262 224 264 0.76 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF431-207 - 485 1.7e-12 47.2 87.4 6 13 0.0084 5.8 7.1 1.0 6 19 253 266 252 273 0.88 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF431-207 - 485 1.7e-12 47.2 87.4 7 13 0.00016 0.11 12.6 4.7 6 34 281 316 280 320 0.88 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF431-207 - 485 1.7e-12 47.2 87.4 8 13 0.00013 0.088 12.9 4.9 6 38 309 348 308 349 0.88 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF431-207 - 485 1.7e-12 47.2 87.4 9 13 0.00027 0.18 11.9 6.4 6 35 337 373 336 377 0.85 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF431-207 - 485 1.7e-12 47.2 87.4 10 13 0.00015 0.1 12.7 6.1 6 38 365 404 363 405 0.85 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF431-207 - 485 1.7e-12 47.2 87.4 11 13 0.0028 1.9 8.7 0.7 6 17 393 404 392 413 0.84 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF431-207 - 485 1.7e-12 47.2 87.4 12 13 0.00055 0.38 10.9 6.3 6 33 421 455 420 460 0.89 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF431-207 - 485 1.7e-12 47.2 87.4 13 13 0.036 25 5.1 0.8 6 17 449 460 448 468 0.84 Zinc ribbon domain # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF431-207.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF431-207.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF431-207.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF431-207.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF431-207.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:06:21 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZNF432-201 - 652 4e-103 333.6 90.4 1 17 5.8e-07 0.0005 20.4 1.4 3 25 193 215 192 216 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF432-201 - 652 4e-103 333.6 90.4 2 17 1.5e-09 1.3e-06 28.5 0.2 2 25 220 243 219 244 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF432-201 - 652 4e-103 333.6 90.4 3 17 3.1e-06 0.0026 18.1 0.6 2 25 248 271 247 271 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF432-201 - 652 4e-103 333.6 90.4 4 17 7e-08 6e-05 23.3 0.3 2 24 276 298 275 299 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF432-201 - 652 4e-103 333.6 90.4 5 17 1.1e-07 9.2e-05 22.7 0.1 1 25 303 327 303 327 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF432-201 - 652 4e-103 333.6 90.4 6 17 5.1e-09 4.3e-06 26.9 0.2 5 26 335 356 331 356 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF432-201 - 652 4e-103 333.6 90.4 7 17 1.2e-07 0.0001 22.6 0.5 5 25 363 383 362 383 0.97 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF432-201 - 652 4e-103 333.6 90.4 8 17 3.7e-08 3.1e-05 24.2 0.6 5 24 391 410 388 412 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF432-201 - 652 4e-103 333.6 90.4 9 17 2.7e-08 2.3e-05 24.6 0.1 1 25 415 439 415 439 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF432-201 - 652 4e-103 333.6 90.4 10 17 3.4e-10 2.9e-07 30.6 0.3 5 24 447 466 443 467 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF432-201 - 652 4e-103 333.6 90.4 11 17 4.3e-10 3.6e-07 30.3 0.3 4 24 474 494 471 495 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF432-201 - 652 4e-103 333.6 90.4 12 17 8.9e-09 7.6e-06 26.1 0.1 2 25 500 523 499 524 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF432-201 - 652 4e-103 333.6 90.4 13 17 1.9e-10 1.6e-07 31.4 0.2 1 25 527 551 527 551 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF432-201 - 652 4e-103 333.6 90.4 14 17 0.029 25 5.5 0.3 4 25 558 579 555 580 0.87 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF432-201 - 652 4e-103 333.6 90.4 15 17 1.4e-07 0.00012 22.3 0.2 2 25 584 607 583 607 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF432-201 - 652 4e-103 333.6 90.4 16 17 9.5e-11 8.1e-08 32.4 0.4 4 26 614 636 611 636 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF432-201 - 652 4e-103 333.6 90.4 17 17 0.15 1.3e+02 3.3 0.1 1 14 639 652 639 652 0.88 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZNF432-201 - 652 6.4e-86 278.3 99.8 1 17 0.13 1.1e+02 3.6 0.5 11 23 187 199 184 199 0.93 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF432-201 - 652 6.4e-86 278.3 99.8 2 17 2.2e-07 0.00019 21.7 0.7 1 23 205 227 205 227 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF432-201 - 652 6.4e-86 278.3 99.8 3 17 6.3e-06 0.0054 17.1 0.7 3 23 235 255 233 255 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF432-201 - 652 6.4e-86 278.3 99.8 4 17 1.4e-07 0.00012 22.3 0.6 1 23 261 283 261 283 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF432-201 - 652 6.4e-86 278.3 99.8 5 17 1.3e-07 0.00011 22.4 0.1 1 23 289 311 289 311 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF432-201 - 652 6.4e-86 278.3 99.8 6 17 3.1e-08 2.7e-05 24.4 0.2 1 23 317 339 317 339 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF432-201 - 652 6.4e-86 278.3 99.8 7 17 2.1e-06 0.0018 18.6 1.2 1 23 345 367 345 367 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF432-201 - 652 6.4e-86 278.3 99.8 8 17 1.7e-06 0.0015 18.9 0.6 1 23 373 395 373 395 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF432-201 - 652 6.4e-86 278.3 99.8 9 17 2.4e-09 2.1e-06 27.9 0.2 1 23 401 423 401 423 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF432-201 - 652 6.4e-86 278.3 99.8 10 17 8.7e-08 7.5e-05 23.0 0.3 1 23 429 451 429 451 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF432-201 - 652 6.4e-86 278.3 99.8 11 17 1.6e-07 0.00013 22.2 0.4 1 23 457 479 457 479 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF432-201 - 652 6.4e-86 278.3 99.8 12 17 1.6e-07 0.00014 22.1 0.2 1 23 485 507 485 507 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF432-201 - 652 6.4e-86 278.3 99.8 13 17 7.3e-09 6.3e-06 26.4 0.2 1 23 513 535 513 535 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF432-201 - 652 6.4e-86 278.3 99.8 14 17 2.2e-06 0.0019 18.5 0.4 1 23 541 563 541 563 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF432-201 - 652 6.4e-86 278.3 99.8 15 17 0.00038 0.32 11.5 0.3 2 23 570 591 569 591 0.95 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF432-201 - 652 6.4e-86 278.3 99.8 16 17 6.3e-07 0.00054 20.3 0.4 3 23 599 619 597 619 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF432-201 - 652 6.4e-86 278.3 99.8 17 17 2.2e-08 1.8e-05 24.9 1.0 1 23 625 647 625 647 0.99 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZNF432-201 - 652 5.4e-52 169.9 97.2 1 18 9.3 7.9e+03 -1.7 0.0 12 21 84 93 76 95 0.57 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF432-201 - 652 5.4e-52 169.9 97.2 2 18 1.1 9e+02 1.2 0.2 11 23 187 199 184 200 0.89 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF432-201 - 652 5.4e-52 169.9 97.2 3 18 0.0001 0.087 13.7 1.0 1 23 205 227 205 228 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF432-201 - 652 5.4e-52 169.9 97.2 4 18 5.9e-05 0.051 14.4 0.7 2 23 234 255 233 256 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF432-201 - 652 5.4e-52 169.9 97.2 5 18 7.5e-06 0.0064 17.2 0.5 1 23 261 283 261 284 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF432-201 - 652 5.4e-52 169.9 97.2 6 18 2.2e-05 0.019 15.8 0.1 1 23 289 311 289 312 0.97 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF432-201 - 652 5.4e-52 169.9 97.2 7 18 1.9e-05 0.016 16.0 0.1 1 23 317 339 317 340 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF432-201 - 652 5.4e-52 169.9 97.2 8 18 6.2e-05 0.053 14.4 0.7 1 23 345 367 345 368 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF432-201 - 652 5.4e-52 169.9 97.2 9 18 7.2e-05 0.061 14.2 0.3 1 23 373 395 373 396 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF432-201 - 652 5.4e-52 169.9 97.2 10 18 4.7e-06 0.004 17.9 0.2 1 23 401 423 401 424 0.97 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF432-201 - 652 5.4e-52 169.9 97.2 11 18 6.8e-05 0.058 14.2 0.3 1 23 429 451 429 452 0.88 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF432-201 - 652 5.4e-52 169.9 97.2 12 18 2.1e-05 0.018 15.8 0.4 1 23 457 479 457 480 0.97 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF432-201 - 652 5.4e-52 169.9 97.2 13 18 0.00034 0.29 12.1 0.2 1 23 485 507 485 508 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF432-201 - 652 5.4e-52 169.9 97.2 14 18 3.3e-05 0.028 15.2 0.2 1 23 513 535 513 536 0.97 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF432-201 - 652 5.4e-52 169.9 97.2 15 18 0.00032 0.27 12.2 0.4 1 23 541 563 541 564 0.90 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF432-201 - 652 5.4e-52 169.9 97.2 16 18 0.0051 4.4 8.4 0.5 2 23 570 591 569 592 0.89 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF432-201 - 652 5.4e-52 169.9 97.2 17 18 8.7e-05 0.075 13.9 0.3 2 23 598 619 597 620 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF432-201 - 652 5.4e-52 169.9 97.2 18 18 3.8e-06 0.0032 18.2 0.9 1 23 625 647 625 648 0.97 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF432-201 - 652 5.4e-32 109.2 79.5 1 16 0.0013 1.1 9.3 0.6 2 12 205 215 204 227 0.85 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF432-201 - 652 5.4e-32 109.2 79.5 2 16 0.0036 3.1 7.9 0.9 2 26 233 257 233 258 0.89 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF432-201 - 652 5.4e-32 109.2 79.5 3 16 3.5e-06 0.003 17.5 0.3 2 24 261 283 260 286 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF432-201 - 652 5.4e-32 109.2 79.5 4 16 0.00037 0.31 11.1 0.1 2 24 289 311 289 314 0.89 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF432-201 - 652 5.4e-32 109.2 79.5 5 16 0.0018 1.5 8.9 0.1 2 11 317 326 316 339 0.91 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF432-201 - 652 5.4e-32 109.2 79.5 6 16 0.0013 1.1 9.3 0.3 2 13 345 356 345 356 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF432-201 - 652 5.4e-32 109.2 79.5 7 16 0.00023 0.19 11.7 0.3 2 24 373 395 373 398 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF432-201 - 652 5.4e-32 109.2 79.5 8 16 1.7e-05 0.015 15.3 0.2 2 24 401 423 401 424 0.96 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF432-201 - 652 5.4e-32 109.2 79.5 9 16 0.0063 5.4 7.1 0.1 2 11 429 438 428 451 0.90 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF432-201 - 652 5.4e-32 109.2 79.5 10 16 0.0025 2.1 8.4 0.2 2 12 457 467 457 481 0.84 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF432-201 - 652 5.4e-32 109.2 79.5 11 16 0.0028 2.4 8.3 0.1 2 11 485 494 485 509 0.83 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF432-201 - 652 5.4e-32 109.2 79.5 12 16 0.0054 4.6 7.3 0.3 2 12 513 523 513 537 0.82 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF432-201 - 652 5.4e-32 109.2 79.5 13 16 0.015 13 5.9 0.1 3 12 542 551 541 552 0.85 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF432-201 - 652 5.4e-32 109.2 79.5 14 16 0.0024 2.1 8.5 0.2 3 21 570 588 570 593 0.89 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF432-201 - 652 5.4e-32 109.2 79.5 15 16 0.003 2.5 8.2 0.3 2 24 597 619 597 622 0.85 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF432-201 - 652 5.4e-32 109.2 79.5 16 16 3.6e-05 0.03 14.3 0.5 2 24 625 647 625 649 0.96 C2H2-type zinc finger KRAB PF01352.27 42 ZNF432-201 - 652 4.2e-21 74.3 0.7 1 1 1e-23 8.7e-21 73.3 0.7 2 42 8 48 7 48 0.98 KRAB box Zn-ribbon_8 PF09723.10 40 ZNF432-201 - 652 2.9e-17 62.5 59.9 1 9 0.044 38 4.5 0.2 16 38 193 216 187 219 0.68 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF432-201 - 652 2.9e-17 62.5 59.9 2 9 0.0055 4.7 7.4 1.6 6 34 233 268 232 268 0.90 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF432-201 - 652 2.9e-17 62.5 59.9 3 9 6.8e-05 0.058 13.5 1.4 6 34 261 296 259 302 0.91 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF432-201 - 652 2.9e-17 62.5 59.9 4 9 3.4e-05 0.029 14.5 0.7 6 34 317 352 316 359 0.87 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF432-201 - 652 2.9e-17 62.5 59.9 5 9 6.1e-05 0.052 13.7 1.7 6 35 373 409 372 413 0.86 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF432-201 - 652 2.9e-17 62.5 59.9 6 9 4.8e-05 0.041 14.0 0.4 6 34 429 464 428 472 0.87 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF432-201 - 652 2.9e-17 62.5 59.9 7 9 7.4e-05 0.063 13.4 0.8 6 34 485 520 484 525 0.90 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF432-201 - 652 2.9e-17 62.5 59.9 8 9 0.00023 0.2 11.8 3.2 6 34 541 576 540 581 0.87 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF432-201 - 652 2.9e-17 62.5 59.9 9 9 0.00073 0.62 10.2 1.3 6 34 597 632 596 638 0.88 Zinc ribbon domain zf-C2H2_jaz PF12171.8 27 ZNF432-201 - 652 1.4e-15 57.1 60.9 1 17 4.9 4.2e+03 -1.8 0.2 8 20 95 107 95 108 0.89 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF432-201 - 652 1.4e-15 57.1 60.9 2 17 0.0047 4 7.8 0.3 2 22 205 225 204 225 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF432-201 - 652 1.4e-15 57.1 60.9 3 17 0.0016 1.3 9.3 0.0 4 22 235 253 232 253 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF432-201 - 652 1.4e-15 57.1 60.9 4 17 0.0063 5.3 7.4 0.2 2 24 261 283 260 283 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF432-201 - 652 1.4e-15 57.1 60.9 5 17 0.018 16 5.9 0.0 2 22 289 309 288 311 0.90 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF432-201 - 652 1.4e-15 57.1 60.9 6 17 0.0089 7.6 6.9 0.1 2 24 317 339 316 339 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF432-201 - 652 1.4e-15 57.1 60.9 7 17 0.081 69 3.9 0.3 2 16 345 359 344 367 0.78 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF432-201 - 652 1.4e-15 57.1 60.9 8 17 0.017 14 6.1 0.1 2 24 373 395 372 395 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF432-201 - 652 1.4e-15 57.1 60.9 9 17 0.0073 6.3 7.2 0.0 2 22 401 421 400 423 0.91 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF432-201 - 652 1.4e-15 57.1 60.9 10 17 1.3 1.1e+03 0.0 0.1 4 22 431 449 429 451 0.74 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF432-201 - 652 1.4e-15 57.1 60.9 11 17 0.36 3.1e+02 1.8 0.0 2 12 457 467 456 479 0.74 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF432-201 - 652 1.4e-15 57.1 60.9 12 17 0.064 55 4.2 0.0 2 23 485 506 484 507 0.81 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF432-201 - 652 1.4e-15 57.1 60.9 13 17 0.04 35 4.9 0.1 2 24 513 535 512 535 0.90 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF432-201 - 652 1.4e-15 57.1 60.9 14 17 0.06 51 4.3 0.1 2 20 541 559 540 561 0.81 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF432-201 - 652 1.4e-15 57.1 60.9 15 17 0.042 36 4.8 0.0 4 21 571 588 570 589 0.91 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF432-201 - 652 1.4e-15 57.1 60.9 16 17 0.27 2.3e+02 2.2 0.1 4 24 599 619 597 619 0.91 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF432-201 - 652 1.4e-15 57.1 60.9 17 17 0.00011 0.096 13.0 0.3 2 24 625 647 624 648 0.93 Zinc-finger double-stranded RNA-binding zinc_ribbon_9 PF14369.6 35 ZNF432-201 - 652 3.7e-15 55.9 43.2 1 15 0.03 25 5.2 0.0 21 32 205 215 191 217 0.70 zinc-ribbon zinc_ribbon_9 PF14369.6 35 ZNF432-201 - 652 3.7e-15 55.9 43.2 2 15 0.31 2.6e+02 2.0 0.1 13 31 253 270 249 272 0.76 zinc-ribbon zinc_ribbon_9 PF14369.6 35 ZNF432-201 - 652 3.7e-15 55.9 43.2 3 15 0.014 12 6.2 0.0 21 31 286 298 275 298 0.70 zinc-ribbon zinc_ribbon_9 PF14369.6 35 ZNF432-201 - 652 3.7e-15 55.9 43.2 4 15 0.023 20 5.6 0.0 20 31 314 326 302 328 0.68 zinc-ribbon zinc_ribbon_9 PF14369.6 35 ZNF432-201 - 652 3.7e-15 55.9 43.2 5 15 0.029 24 5.3 0.0 20 31 342 354 333 357 0.70 zinc-ribbon zinc_ribbon_9 PF14369.6 35 ZNF432-201 - 652 3.7e-15 55.9 43.2 6 15 0.0087 7.5 6.9 0.0 21 31 370 382 360 384 0.70 zinc-ribbon zinc_ribbon_9 PF14369.6 35 ZNF432-201 - 652 3.7e-15 55.9 43.2 7 15 0.029 25 5.2 0.1 13 31 390 410 386 410 0.68 zinc-ribbon zinc_ribbon_9 PF14369.6 35 ZNF432-201 - 652 3.7e-15 55.9 43.2 8 15 0.034 29 5.0 0.0 20 31 426 438 415 441 0.70 zinc-ribbon zinc_ribbon_9 PF14369.6 35 ZNF432-201 - 652 3.7e-15 55.9 43.2 9 15 0.039 33 4.8 0.1 20 31 454 466 445 466 0.70 zinc-ribbon zinc_ribbon_9 PF14369.6 35 ZNF432-201 - 652 3.7e-15 55.9 43.2 10 15 0.041 35 4.8 0.0 22 32 484 495 472 497 0.70 zinc-ribbon zinc_ribbon_9 PF14369.6 35 ZNF432-201 - 652 3.7e-15 55.9 43.2 11 15 0.013 11 6.3 0.0 21 31 511 522 501 523 0.70 zinc-ribbon zinc_ribbon_9 PF14369.6 35 ZNF432-201 - 652 3.7e-15 55.9 43.2 12 15 0.022 18 5.7 0.0 15 31 533 550 527 552 0.71 zinc-ribbon zinc_ribbon_9 PF14369.6 35 ZNF432-201 - 652 3.7e-15 55.9 43.2 13 15 0.024 20 5.5 0.3 16 31 562 578 557 581 0.70 zinc-ribbon zinc_ribbon_9 PF14369.6 35 ZNF432-201 - 652 3.7e-15 55.9 43.2 14 15 0.076 65 3.9 0.1 24 31 599 606 587 608 0.78 zinc-ribbon zinc_ribbon_9 PF14369.6 35 ZNF432-201 - 652 3.7e-15 55.9 43.2 15 15 0.52 4.5e+02 1.2 0.1 20 31 622 634 612 634 0.65 zinc-ribbon zf_UBZ PF18439.1 32 ZNF432-201 - 652 4e-15 55.1 58.7 1 16 0.0058 5 6.8 0.3 2 20 204 223 203 224 0.76 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF432-201 - 652 4e-15 55.1 58.7 2 16 1.1 9.2e+02 -0.4 0.0 3 21 233 252 232 252 0.87 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF432-201 - 652 4e-15 55.1 58.7 3 16 0.00027 0.23 11.1 0.1 2 21 260 280 259 280 0.90 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF432-201 - 652 4e-15 55.1 58.7 4 16 0.028 24 4.6 0.1 3 13 289 299 287 304 0.89 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF432-201 - 652 4e-15 55.1 58.7 5 16 0.0064 5.5 6.7 0.1 2 12 316 326 315 332 0.85 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF432-201 - 652 4e-15 55.1 58.7 6 16 0.017 14 5.3 0.2 3 12 345 354 343 357 0.85 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF432-201 - 652 4e-15 55.1 58.7 7 16 0.0038 3.2 7.4 0.1 3 21 373 392 371 392 0.91 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF432-201 - 652 4e-15 55.1 58.7 8 16 0.0041 3.5 7.3 0.1 3 13 401 411 399 419 0.88 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF432-201 - 652 4e-15 55.1 58.7 9 16 0.003 2.6 7.7 0.1 2 14 428 440 427 444 0.81 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF432-201 - 652 4e-15 55.1 58.7 10 16 0.0013 1.1 8.9 0.1 3 15 457 469 455 473 0.85 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF432-201 - 652 4e-15 55.1 58.7 11 16 0.019 17 5.1 0.0 3 13 485 495 483 503 0.85 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF432-201 - 652 4e-15 55.1 58.7 12 16 0.073 63 3.3 0.1 3 12 513 522 511 526 0.86 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF432-201 - 652 4e-15 55.1 58.7 13 16 0.078 67 3.2 0.1 3 12 541 550 539 554 0.83 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF432-201 - 652 4e-15 55.1 58.7 14 16 0.088 75 3.0 0.5 4 17 570 584 567 588 0.77 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF432-201 - 652 4e-15 55.1 58.7 15 16 0.31 2.6e+02 1.3 0.1 3 14 597 608 595 612 0.79 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF432-201 - 652 4e-15 55.1 58.7 16 16 0.017 14 5.3 0.1 3 14 625 636 623 644 0.85 Ubiquitin-Binding Zinc Finger CpXC PF14353.6 118 ZNF432-201 - 652 2.1e-10 40.6 43.2 1 14 0.52 4.5e+02 0.9 0.3 37 56 204 223 177 252 0.79 CpXC protein CpXC PF14353.6 118 ZNF432-201 - 652 2.1e-10 40.6 43.2 2 14 0.011 9.8 6.3 0.1 34 60 257 283 236 285 0.85 CpXC protein CpXC PF14353.6 118 ZNF432-201 - 652 2.1e-10 40.6 43.2 3 14 0.32 2.7e+02 1.6 0.0 38 60 289 311 287 313 0.88 CpXC protein CpXC PF14353.6 118 ZNF432-201 - 652 2.1e-10 40.6 43.2 4 14 0.074 63 3.7 0.0 37 60 316 339 312 341 0.89 CpXC protein CpXC PF14353.6 118 ZNF432-201 - 652 2.1e-10 40.6 43.2 5 14 0.026 22 5.1 0.1 38 60 345 367 343 369 0.88 CpXC protein CpXC PF14353.6 118 ZNF432-201 - 652 2.1e-10 40.6 43.2 6 14 0.14 1.2e+02 2.7 0.1 38 60 373 395 371 397 0.86 CpXC protein CpXC PF14353.6 118 ZNF432-201 - 652 2.1e-10 40.6 43.2 7 14 0.11 93 3.1 0.0 38 61 401 424 399 427 0.89 CpXC protein CpXC PF14353.6 118 ZNF432-201 - 652 2.1e-10 40.6 43.2 8 14 0.015 13 5.9 0.0 37 60 428 451 425 453 0.89 CpXC protein CpXC PF14353.6 118 ZNF432-201 - 652 2.1e-10 40.6 43.2 9 14 0.0084 7.2 6.7 0.1 38 60 457 479 455 481 0.92 CpXC protein CpXC PF14353.6 118 ZNF432-201 - 652 2.1e-10 40.6 43.2 10 14 0.037 32 4.6 0.0 38 60 485 507 483 509 0.91 CpXC protein CpXC PF14353.6 118 ZNF432-201 - 652 2.1e-10 40.6 43.2 11 14 0.027 23 5.1 0.0 38 60 513 535 511 537 0.90 CpXC protein CpXC PF14353.6 118 ZNF432-201 - 652 2.1e-10 40.6 43.2 12 14 0.1 88 3.2 1.3 3 21 543 561 541 594 0.50 CpXC protein CpXC PF14353.6 118 ZNF432-201 - 652 2.1e-10 40.6 43.2 13 14 0.01 8.9 6.4 0.1 37 60 596 619 579 621 0.79 CpXC protein CpXC PF14353.6 118 ZNF432-201 - 652 2.1e-10 40.6 43.2 14 14 0.1 89 3.2 0.0 38 60 625 647 623 649 0.90 CpXC protein XPA_N PF01286.18 32 ZNF432-201 - 652 3.7e-07 30.1 55.4 1 15 0.015 13 5.9 0.1 3 12 206 215 204 223 0.73 XPA protein N-terminal XPA_N PF01286.18 32 ZNF432-201 - 652 3.7e-07 30.1 55.4 2 15 0.088 75 3.5 0.1 3 16 262 276 261 279 0.73 XPA protein N-terminal XPA_N PF01286.18 32 ZNF432-201 - 652 3.7e-07 30.1 55.4 3 15 0.055 47 4.1 0.1 3 12 290 299 288 300 0.87 XPA protein N-terminal XPA_N PF01286.18 32 ZNF432-201 - 652 3.7e-07 30.1 55.4 4 15 0.059 51 4.0 0.1 3 12 318 327 317 332 0.88 XPA protein N-terminal XPA_N PF01286.18 32 ZNF432-201 - 652 3.7e-07 30.1 55.4 5 15 0.038 33 4.6 0.1 3 12 346 355 344 359 0.87 XPA protein N-terminal XPA_N PF01286.18 32 ZNF432-201 - 652 3.7e-07 30.1 55.4 6 15 0.051 44 4.2 0.1 3 12 374 383 372 386 0.88 XPA protein N-terminal XPA_N PF01286.18 32 ZNF432-201 - 652 3.7e-07 30.1 55.4 7 15 0.063 53 4.0 0.1 3 12 402 411 400 413 0.88 XPA protein N-terminal XPA_N PF01286.18 32 ZNF432-201 - 652 3.7e-07 30.1 55.4 8 15 0.081 69 3.6 0.1 4 12 431 439 429 444 0.89 XPA protein N-terminal XPA_N PF01286.18 32 ZNF432-201 - 652 3.7e-07 30.1 55.4 9 15 0.032 27 4.9 0.1 3 12 458 467 456 473 0.86 XPA protein N-terminal XPA_N PF01286.18 32 ZNF432-201 - 652 3.7e-07 30.1 55.4 10 15 0.059 51 4.0 0.0 3 11 486 494 484 501 0.89 XPA protein N-terminal XPA_N PF01286.18 32 ZNF432-201 - 652 3.7e-07 30.1 55.4 11 15 0.049 42 4.3 0.1 3 12 514 523 512 524 0.89 XPA protein N-terminal XPA_N PF01286.18 32 ZNF432-201 - 652 3.7e-07 30.1 55.4 12 15 0.068 58 3.9 0.1 4 12 543 551 541 556 0.86 XPA protein N-terminal XPA_N PF01286.18 32 ZNF432-201 - 652 3.7e-07 30.1 55.4 13 15 0.39 3.3e+02 1.4 1.3 3 12 570 579 569 580 0.88 XPA protein N-terminal XPA_N PF01286.18 32 ZNF432-201 - 652 3.7e-07 30.1 55.4 14 15 0.074 63 3.7 0.1 4 12 599 607 597 613 0.86 XPA protein N-terminal XPA_N PF01286.18 32 ZNF432-201 - 652 3.7e-07 30.1 55.4 15 15 0.23 2e+02 2.1 0.3 3 12 626 635 625 636 0.82 XPA protein N-terminal # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF432-201.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF432-201.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF432-201.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF432-201.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF432-201.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:06:21 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZNF432-202 - 652 4e-103 333.6 90.4 1 17 5.8e-07 0.0005 20.4 1.4 3 25 193 215 192 216 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF432-202 - 652 4e-103 333.6 90.4 2 17 1.5e-09 1.3e-06 28.5 0.2 2 25 220 243 219 244 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF432-202 - 652 4e-103 333.6 90.4 3 17 3.1e-06 0.0026 18.1 0.6 2 25 248 271 247 271 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF432-202 - 652 4e-103 333.6 90.4 4 17 7e-08 6e-05 23.3 0.3 2 24 276 298 275 299 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF432-202 - 652 4e-103 333.6 90.4 5 17 1.1e-07 9.2e-05 22.7 0.1 1 25 303 327 303 327 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF432-202 - 652 4e-103 333.6 90.4 6 17 5.1e-09 4.3e-06 26.9 0.2 5 26 335 356 331 356 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF432-202 - 652 4e-103 333.6 90.4 7 17 1.2e-07 0.0001 22.6 0.5 5 25 363 383 362 383 0.97 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF432-202 - 652 4e-103 333.6 90.4 8 17 3.7e-08 3.1e-05 24.2 0.6 5 24 391 410 388 412 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF432-202 - 652 4e-103 333.6 90.4 9 17 2.7e-08 2.3e-05 24.6 0.1 1 25 415 439 415 439 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF432-202 - 652 4e-103 333.6 90.4 10 17 3.4e-10 2.9e-07 30.6 0.3 5 24 447 466 443 467 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF432-202 - 652 4e-103 333.6 90.4 11 17 4.3e-10 3.6e-07 30.3 0.3 4 24 474 494 471 495 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF432-202 - 652 4e-103 333.6 90.4 12 17 8.9e-09 7.6e-06 26.1 0.1 2 25 500 523 499 524 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF432-202 - 652 4e-103 333.6 90.4 13 17 1.9e-10 1.6e-07 31.4 0.2 1 25 527 551 527 551 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF432-202 - 652 4e-103 333.6 90.4 14 17 0.029 25 5.5 0.3 4 25 558 579 555 580 0.87 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF432-202 - 652 4e-103 333.6 90.4 15 17 1.4e-07 0.00012 22.3 0.2 2 25 584 607 583 607 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF432-202 - 652 4e-103 333.6 90.4 16 17 9.5e-11 8.1e-08 32.4 0.4 4 26 614 636 611 636 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF432-202 - 652 4e-103 333.6 90.4 17 17 0.15 1.3e+02 3.3 0.1 1 14 639 652 639 652 0.88 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZNF432-202 - 652 6.4e-86 278.3 99.8 1 17 0.13 1.1e+02 3.6 0.5 11 23 187 199 184 199 0.93 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF432-202 - 652 6.4e-86 278.3 99.8 2 17 2.2e-07 0.00019 21.7 0.7 1 23 205 227 205 227 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF432-202 - 652 6.4e-86 278.3 99.8 3 17 6.3e-06 0.0054 17.1 0.7 3 23 235 255 233 255 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF432-202 - 652 6.4e-86 278.3 99.8 4 17 1.4e-07 0.00012 22.3 0.6 1 23 261 283 261 283 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF432-202 - 652 6.4e-86 278.3 99.8 5 17 1.3e-07 0.00011 22.4 0.1 1 23 289 311 289 311 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF432-202 - 652 6.4e-86 278.3 99.8 6 17 3.1e-08 2.7e-05 24.4 0.2 1 23 317 339 317 339 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF432-202 - 652 6.4e-86 278.3 99.8 7 17 2.1e-06 0.0018 18.6 1.2 1 23 345 367 345 367 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF432-202 - 652 6.4e-86 278.3 99.8 8 17 1.7e-06 0.0015 18.9 0.6 1 23 373 395 373 395 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF432-202 - 652 6.4e-86 278.3 99.8 9 17 2.4e-09 2.1e-06 27.9 0.2 1 23 401 423 401 423 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF432-202 - 652 6.4e-86 278.3 99.8 10 17 8.7e-08 7.5e-05 23.0 0.3 1 23 429 451 429 451 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF432-202 - 652 6.4e-86 278.3 99.8 11 17 1.6e-07 0.00013 22.2 0.4 1 23 457 479 457 479 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF432-202 - 652 6.4e-86 278.3 99.8 12 17 1.6e-07 0.00014 22.1 0.2 1 23 485 507 485 507 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF432-202 - 652 6.4e-86 278.3 99.8 13 17 7.3e-09 6.3e-06 26.4 0.2 1 23 513 535 513 535 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF432-202 - 652 6.4e-86 278.3 99.8 14 17 2.2e-06 0.0019 18.5 0.4 1 23 541 563 541 563 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF432-202 - 652 6.4e-86 278.3 99.8 15 17 0.00038 0.32 11.5 0.3 2 23 570 591 569 591 0.95 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF432-202 - 652 6.4e-86 278.3 99.8 16 17 6.3e-07 0.00054 20.3 0.4 3 23 599 619 597 619 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF432-202 - 652 6.4e-86 278.3 99.8 17 17 2.2e-08 1.8e-05 24.9 1.0 1 23 625 647 625 647 0.99 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZNF432-202 - 652 5.4e-52 169.9 97.2 1 18 9.3 7.9e+03 -1.7 0.0 12 21 84 93 76 95 0.57 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF432-202 - 652 5.4e-52 169.9 97.2 2 18 1.1 9e+02 1.2 0.2 11 23 187 199 184 200 0.89 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF432-202 - 652 5.4e-52 169.9 97.2 3 18 0.0001 0.087 13.7 1.0 1 23 205 227 205 228 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF432-202 - 652 5.4e-52 169.9 97.2 4 18 5.9e-05 0.051 14.4 0.7 2 23 234 255 233 256 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF432-202 - 652 5.4e-52 169.9 97.2 5 18 7.5e-06 0.0064 17.2 0.5 1 23 261 283 261 284 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF432-202 - 652 5.4e-52 169.9 97.2 6 18 2.2e-05 0.019 15.8 0.1 1 23 289 311 289 312 0.97 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF432-202 - 652 5.4e-52 169.9 97.2 7 18 1.9e-05 0.016 16.0 0.1 1 23 317 339 317 340 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF432-202 - 652 5.4e-52 169.9 97.2 8 18 6.2e-05 0.053 14.4 0.7 1 23 345 367 345 368 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF432-202 - 652 5.4e-52 169.9 97.2 9 18 7.2e-05 0.061 14.2 0.3 1 23 373 395 373 396 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF432-202 - 652 5.4e-52 169.9 97.2 10 18 4.7e-06 0.004 17.9 0.2 1 23 401 423 401 424 0.97 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF432-202 - 652 5.4e-52 169.9 97.2 11 18 6.8e-05 0.058 14.2 0.3 1 23 429 451 429 452 0.88 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF432-202 - 652 5.4e-52 169.9 97.2 12 18 2.1e-05 0.018 15.8 0.4 1 23 457 479 457 480 0.97 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF432-202 - 652 5.4e-52 169.9 97.2 13 18 0.00034 0.29 12.1 0.2 1 23 485 507 485 508 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF432-202 - 652 5.4e-52 169.9 97.2 14 18 3.3e-05 0.028 15.2 0.2 1 23 513 535 513 536 0.97 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF432-202 - 652 5.4e-52 169.9 97.2 15 18 0.00032 0.27 12.2 0.4 1 23 541 563 541 564 0.90 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF432-202 - 652 5.4e-52 169.9 97.2 16 18 0.0051 4.4 8.4 0.5 2 23 570 591 569 592 0.89 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF432-202 - 652 5.4e-52 169.9 97.2 17 18 8.7e-05 0.075 13.9 0.3 2 23 598 619 597 620 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF432-202 - 652 5.4e-52 169.9 97.2 18 18 3.8e-06 0.0032 18.2 0.9 1 23 625 647 625 648 0.97 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF432-202 - 652 5.4e-32 109.2 79.5 1 16 0.0013 1.1 9.3 0.6 2 12 205 215 204 227 0.85 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF432-202 - 652 5.4e-32 109.2 79.5 2 16 0.0036 3.1 7.9 0.9 2 26 233 257 233 258 0.89 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF432-202 - 652 5.4e-32 109.2 79.5 3 16 3.5e-06 0.003 17.5 0.3 2 24 261 283 260 286 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF432-202 - 652 5.4e-32 109.2 79.5 4 16 0.00037 0.31 11.1 0.1 2 24 289 311 289 314 0.89 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF432-202 - 652 5.4e-32 109.2 79.5 5 16 0.0018 1.5 8.9 0.1 2 11 317 326 316 339 0.91 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF432-202 - 652 5.4e-32 109.2 79.5 6 16 0.0013 1.1 9.3 0.3 2 13 345 356 345 356 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF432-202 - 652 5.4e-32 109.2 79.5 7 16 0.00023 0.19 11.7 0.3 2 24 373 395 373 398 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF432-202 - 652 5.4e-32 109.2 79.5 8 16 1.7e-05 0.015 15.3 0.2 2 24 401 423 401 424 0.96 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF432-202 - 652 5.4e-32 109.2 79.5 9 16 0.0063 5.4 7.1 0.1 2 11 429 438 428 451 0.90 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF432-202 - 652 5.4e-32 109.2 79.5 10 16 0.0025 2.1 8.4 0.2 2 12 457 467 457 481 0.84 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF432-202 - 652 5.4e-32 109.2 79.5 11 16 0.0028 2.4 8.3 0.1 2 11 485 494 485 509 0.83 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF432-202 - 652 5.4e-32 109.2 79.5 12 16 0.0054 4.6 7.3 0.3 2 12 513 523 513 537 0.82 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF432-202 - 652 5.4e-32 109.2 79.5 13 16 0.015 13 5.9 0.1 3 12 542 551 541 552 0.85 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF432-202 - 652 5.4e-32 109.2 79.5 14 16 0.0024 2.1 8.5 0.2 3 21 570 588 570 593 0.89 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF432-202 - 652 5.4e-32 109.2 79.5 15 16 0.003 2.5 8.2 0.3 2 24 597 619 597 622 0.85 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF432-202 - 652 5.4e-32 109.2 79.5 16 16 3.6e-05 0.03 14.3 0.5 2 24 625 647 625 649 0.96 C2H2-type zinc finger KRAB PF01352.27 42 ZNF432-202 - 652 4.2e-21 74.3 0.7 1 1 1e-23 8.7e-21 73.3 0.7 2 42 8 48 7 48 0.98 KRAB box Zn-ribbon_8 PF09723.10 40 ZNF432-202 - 652 2.9e-17 62.5 59.9 1 9 0.044 38 4.5 0.2 16 38 193 216 187 219 0.68 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF432-202 - 652 2.9e-17 62.5 59.9 2 9 0.0055 4.7 7.4 1.6 6 34 233 268 232 268 0.90 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF432-202 - 652 2.9e-17 62.5 59.9 3 9 6.8e-05 0.058 13.5 1.4 6 34 261 296 259 302 0.91 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF432-202 - 652 2.9e-17 62.5 59.9 4 9 3.4e-05 0.029 14.5 0.7 6 34 317 352 316 359 0.87 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF432-202 - 652 2.9e-17 62.5 59.9 5 9 6.1e-05 0.052 13.7 1.7 6 35 373 409 372 413 0.86 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF432-202 - 652 2.9e-17 62.5 59.9 6 9 4.8e-05 0.041 14.0 0.4 6 34 429 464 428 472 0.87 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF432-202 - 652 2.9e-17 62.5 59.9 7 9 7.4e-05 0.063 13.4 0.8 6 34 485 520 484 525 0.90 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF432-202 - 652 2.9e-17 62.5 59.9 8 9 0.00023 0.2 11.8 3.2 6 34 541 576 540 581 0.87 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF432-202 - 652 2.9e-17 62.5 59.9 9 9 0.00073 0.62 10.2 1.3 6 34 597 632 596 638 0.88 Zinc ribbon domain zf-C2H2_jaz PF12171.8 27 ZNF432-202 - 652 1.4e-15 57.1 60.9 1 17 4.9 4.2e+03 -1.8 0.2 8 20 95 107 95 108 0.89 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF432-202 - 652 1.4e-15 57.1 60.9 2 17 0.0047 4 7.8 0.3 2 22 205 225 204 225 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF432-202 - 652 1.4e-15 57.1 60.9 3 17 0.0016 1.3 9.3 0.0 4 22 235 253 232 253 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF432-202 - 652 1.4e-15 57.1 60.9 4 17 0.0063 5.3 7.4 0.2 2 24 261 283 260 283 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF432-202 - 652 1.4e-15 57.1 60.9 5 17 0.018 16 5.9 0.0 2 22 289 309 288 311 0.90 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF432-202 - 652 1.4e-15 57.1 60.9 6 17 0.0089 7.6 6.9 0.1 2 24 317 339 316 339 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF432-202 - 652 1.4e-15 57.1 60.9 7 17 0.081 69 3.9 0.3 2 16 345 359 344 367 0.78 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF432-202 - 652 1.4e-15 57.1 60.9 8 17 0.017 14 6.1 0.1 2 24 373 395 372 395 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF432-202 - 652 1.4e-15 57.1 60.9 9 17 0.0073 6.3 7.2 0.0 2 22 401 421 400 423 0.91 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF432-202 - 652 1.4e-15 57.1 60.9 10 17 1.3 1.1e+03 0.0 0.1 4 22 431 449 429 451 0.74 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF432-202 - 652 1.4e-15 57.1 60.9 11 17 0.36 3.1e+02 1.8 0.0 2 12 457 467 456 479 0.74 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF432-202 - 652 1.4e-15 57.1 60.9 12 17 0.064 55 4.2 0.0 2 23 485 506 484 507 0.81 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF432-202 - 652 1.4e-15 57.1 60.9 13 17 0.04 35 4.9 0.1 2 24 513 535 512 535 0.90 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF432-202 - 652 1.4e-15 57.1 60.9 14 17 0.06 51 4.3 0.1 2 20 541 559 540 561 0.81 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF432-202 - 652 1.4e-15 57.1 60.9 15 17 0.042 36 4.8 0.0 4 21 571 588 570 589 0.91 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF432-202 - 652 1.4e-15 57.1 60.9 16 17 0.27 2.3e+02 2.2 0.1 4 24 599 619 597 619 0.91 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF432-202 - 652 1.4e-15 57.1 60.9 17 17 0.00011 0.096 13.0 0.3 2 24 625 647 624 648 0.93 Zinc-finger double-stranded RNA-binding zinc_ribbon_9 PF14369.6 35 ZNF432-202 - 652 3.7e-15 55.9 43.2 1 15 0.03 25 5.2 0.0 21 32 205 215 191 217 0.70 zinc-ribbon zinc_ribbon_9 PF14369.6 35 ZNF432-202 - 652 3.7e-15 55.9 43.2 2 15 0.31 2.6e+02 2.0 0.1 13 31 253 270 249 272 0.76 zinc-ribbon zinc_ribbon_9 PF14369.6 35 ZNF432-202 - 652 3.7e-15 55.9 43.2 3 15 0.014 12 6.2 0.0 21 31 286 298 275 298 0.70 zinc-ribbon zinc_ribbon_9 PF14369.6 35 ZNF432-202 - 652 3.7e-15 55.9 43.2 4 15 0.023 20 5.6 0.0 20 31 314 326 302 328 0.68 zinc-ribbon zinc_ribbon_9 PF14369.6 35 ZNF432-202 - 652 3.7e-15 55.9 43.2 5 15 0.029 24 5.3 0.0 20 31 342 354 333 357 0.70 zinc-ribbon zinc_ribbon_9 PF14369.6 35 ZNF432-202 - 652 3.7e-15 55.9 43.2 6 15 0.0087 7.5 6.9 0.0 21 31 370 382 360 384 0.70 zinc-ribbon zinc_ribbon_9 PF14369.6 35 ZNF432-202 - 652 3.7e-15 55.9 43.2 7 15 0.029 25 5.2 0.1 13 31 390 410 386 410 0.68 zinc-ribbon zinc_ribbon_9 PF14369.6 35 ZNF432-202 - 652 3.7e-15 55.9 43.2 8 15 0.034 29 5.0 0.0 20 31 426 438 415 441 0.70 zinc-ribbon zinc_ribbon_9 PF14369.6 35 ZNF432-202 - 652 3.7e-15 55.9 43.2 9 15 0.039 33 4.8 0.1 20 31 454 466 445 466 0.70 zinc-ribbon zinc_ribbon_9 PF14369.6 35 ZNF432-202 - 652 3.7e-15 55.9 43.2 10 15 0.041 35 4.8 0.0 22 32 484 495 472 497 0.70 zinc-ribbon zinc_ribbon_9 PF14369.6 35 ZNF432-202 - 652 3.7e-15 55.9 43.2 11 15 0.013 11 6.3 0.0 21 31 511 522 501 523 0.70 zinc-ribbon zinc_ribbon_9 PF14369.6 35 ZNF432-202 - 652 3.7e-15 55.9 43.2 12 15 0.022 18 5.7 0.0 15 31 533 550 527 552 0.71 zinc-ribbon zinc_ribbon_9 PF14369.6 35 ZNF432-202 - 652 3.7e-15 55.9 43.2 13 15 0.024 20 5.5 0.3 16 31 562 578 557 581 0.70 zinc-ribbon zinc_ribbon_9 PF14369.6 35 ZNF432-202 - 652 3.7e-15 55.9 43.2 14 15 0.076 65 3.9 0.1 24 31 599 606 587 608 0.78 zinc-ribbon zinc_ribbon_9 PF14369.6 35 ZNF432-202 - 652 3.7e-15 55.9 43.2 15 15 0.52 4.5e+02 1.2 0.1 20 31 622 634 612 634 0.65 zinc-ribbon zf_UBZ PF18439.1 32 ZNF432-202 - 652 4e-15 55.1 58.7 1 16 0.0058 5 6.8 0.3 2 20 204 223 203 224 0.76 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF432-202 - 652 4e-15 55.1 58.7 2 16 1.1 9.2e+02 -0.4 0.0 3 21 233 252 232 252 0.87 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF432-202 - 652 4e-15 55.1 58.7 3 16 0.00027 0.23 11.1 0.1 2 21 260 280 259 280 0.90 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF432-202 - 652 4e-15 55.1 58.7 4 16 0.028 24 4.6 0.1 3 13 289 299 287 304 0.89 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF432-202 - 652 4e-15 55.1 58.7 5 16 0.0064 5.5 6.7 0.1 2 12 316 326 315 332 0.85 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF432-202 - 652 4e-15 55.1 58.7 6 16 0.017 14 5.3 0.2 3 12 345 354 343 357 0.85 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF432-202 - 652 4e-15 55.1 58.7 7 16 0.0038 3.2 7.4 0.1 3 21 373 392 371 392 0.91 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF432-202 - 652 4e-15 55.1 58.7 8 16 0.0041 3.5 7.3 0.1 3 13 401 411 399 419 0.88 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF432-202 - 652 4e-15 55.1 58.7 9 16 0.003 2.6 7.7 0.1 2 14 428 440 427 444 0.81 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF432-202 - 652 4e-15 55.1 58.7 10 16 0.0013 1.1 8.9 0.1 3 15 457 469 455 473 0.85 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF432-202 - 652 4e-15 55.1 58.7 11 16 0.019 17 5.1 0.0 3 13 485 495 483 503 0.85 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF432-202 - 652 4e-15 55.1 58.7 12 16 0.073 63 3.3 0.1 3 12 513 522 511 526 0.86 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF432-202 - 652 4e-15 55.1 58.7 13 16 0.078 67 3.2 0.1 3 12 541 550 539 554 0.83 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF432-202 - 652 4e-15 55.1 58.7 14 16 0.088 75 3.0 0.5 4 17 570 584 567 588 0.77 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF432-202 - 652 4e-15 55.1 58.7 15 16 0.31 2.6e+02 1.3 0.1 3 14 597 608 595 612 0.79 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF432-202 - 652 4e-15 55.1 58.7 16 16 0.017 14 5.3 0.1 3 14 625 636 623 644 0.85 Ubiquitin-Binding Zinc Finger CpXC PF14353.6 118 ZNF432-202 - 652 2.1e-10 40.6 43.2 1 14 0.52 4.5e+02 0.9 0.3 37 56 204 223 177 252 0.79 CpXC protein CpXC PF14353.6 118 ZNF432-202 - 652 2.1e-10 40.6 43.2 2 14 0.011 9.8 6.3 0.1 34 60 257 283 236 285 0.85 CpXC protein CpXC PF14353.6 118 ZNF432-202 - 652 2.1e-10 40.6 43.2 3 14 0.32 2.7e+02 1.6 0.0 38 60 289 311 287 313 0.88 CpXC protein CpXC PF14353.6 118 ZNF432-202 - 652 2.1e-10 40.6 43.2 4 14 0.074 63 3.7 0.0 37 60 316 339 312 341 0.89 CpXC protein CpXC PF14353.6 118 ZNF432-202 - 652 2.1e-10 40.6 43.2 5 14 0.026 22 5.1 0.1 38 60 345 367 343 369 0.88 CpXC protein CpXC PF14353.6 118 ZNF432-202 - 652 2.1e-10 40.6 43.2 6 14 0.14 1.2e+02 2.7 0.1 38 60 373 395 371 397 0.86 CpXC protein CpXC PF14353.6 118 ZNF432-202 - 652 2.1e-10 40.6 43.2 7 14 0.11 93 3.1 0.0 38 61 401 424 399 427 0.89 CpXC protein CpXC PF14353.6 118 ZNF432-202 - 652 2.1e-10 40.6 43.2 8 14 0.015 13 5.9 0.0 37 60 428 451 425 453 0.89 CpXC protein CpXC PF14353.6 118 ZNF432-202 - 652 2.1e-10 40.6 43.2 9 14 0.0084 7.2 6.7 0.1 38 60 457 479 455 481 0.92 CpXC protein CpXC PF14353.6 118 ZNF432-202 - 652 2.1e-10 40.6 43.2 10 14 0.037 32 4.6 0.0 38 60 485 507 483 509 0.91 CpXC protein CpXC PF14353.6 118 ZNF432-202 - 652 2.1e-10 40.6 43.2 11 14 0.027 23 5.1 0.0 38 60 513 535 511 537 0.90 CpXC protein CpXC PF14353.6 118 ZNF432-202 - 652 2.1e-10 40.6 43.2 12 14 0.1 88 3.2 1.3 3 21 543 561 541 594 0.50 CpXC protein CpXC PF14353.6 118 ZNF432-202 - 652 2.1e-10 40.6 43.2 13 14 0.01 8.9 6.4 0.1 37 60 596 619 579 621 0.79 CpXC protein CpXC PF14353.6 118 ZNF432-202 - 652 2.1e-10 40.6 43.2 14 14 0.1 89 3.2 0.0 38 60 625 647 623 649 0.90 CpXC protein XPA_N PF01286.18 32 ZNF432-202 - 652 3.7e-07 30.1 55.4 1 15 0.015 13 5.9 0.1 3 12 206 215 204 223 0.73 XPA protein N-terminal XPA_N PF01286.18 32 ZNF432-202 - 652 3.7e-07 30.1 55.4 2 15 0.088 75 3.5 0.1 3 16 262 276 261 279 0.73 XPA protein N-terminal XPA_N PF01286.18 32 ZNF432-202 - 652 3.7e-07 30.1 55.4 3 15 0.055 47 4.1 0.1 3 12 290 299 288 300 0.87 XPA protein N-terminal XPA_N PF01286.18 32 ZNF432-202 - 652 3.7e-07 30.1 55.4 4 15 0.059 51 4.0 0.1 3 12 318 327 317 332 0.88 XPA protein N-terminal XPA_N PF01286.18 32 ZNF432-202 - 652 3.7e-07 30.1 55.4 5 15 0.038 33 4.6 0.1 3 12 346 355 344 359 0.87 XPA protein N-terminal XPA_N PF01286.18 32 ZNF432-202 - 652 3.7e-07 30.1 55.4 6 15 0.051 44 4.2 0.1 3 12 374 383 372 386 0.88 XPA protein N-terminal XPA_N PF01286.18 32 ZNF432-202 - 652 3.7e-07 30.1 55.4 7 15 0.063 53 4.0 0.1 3 12 402 411 400 413 0.88 XPA protein N-terminal XPA_N PF01286.18 32 ZNF432-202 - 652 3.7e-07 30.1 55.4 8 15 0.081 69 3.6 0.1 4 12 431 439 429 444 0.89 XPA protein N-terminal XPA_N PF01286.18 32 ZNF432-202 - 652 3.7e-07 30.1 55.4 9 15 0.032 27 4.9 0.1 3 12 458 467 456 473 0.86 XPA protein N-terminal XPA_N PF01286.18 32 ZNF432-202 - 652 3.7e-07 30.1 55.4 10 15 0.059 51 4.0 0.0 3 11 486 494 484 501 0.89 XPA protein N-terminal XPA_N PF01286.18 32 ZNF432-202 - 652 3.7e-07 30.1 55.4 11 15 0.049 42 4.3 0.1 3 12 514 523 512 524 0.89 XPA protein N-terminal XPA_N PF01286.18 32 ZNF432-202 - 652 3.7e-07 30.1 55.4 12 15 0.068 58 3.9 0.1 4 12 543 551 541 556 0.86 XPA protein N-terminal XPA_N PF01286.18 32 ZNF432-202 - 652 3.7e-07 30.1 55.4 13 15 0.39 3.3e+02 1.4 1.3 3 12 570 579 569 580 0.88 XPA protein N-terminal XPA_N PF01286.18 32 ZNF432-202 - 652 3.7e-07 30.1 55.4 14 15 0.074 63 3.7 0.1 4 12 599 607 597 613 0.86 XPA protein N-terminal XPA_N PF01286.18 32 ZNF432-202 - 652 3.7e-07 30.1 55.4 15 15 0.23 2e+02 2.1 0.3 3 12 626 635 625 636 0.82 XPA protein N-terminal # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF432-202.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF432-202.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF432-202.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF432-202.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF432-202.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:06:22 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- KRAB PF01352.27 42 ZNF432-203 - 81 1.9e-22 78.6 0.7 1 1 1.4e-26 2.5e-22 78.2 0.7 2 42 8 48 7 48 0.98 KRAB box # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF432-203.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF432-203.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF432-203.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF432-203.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF432-203.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:06:22 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF432-204.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF432-204.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF432-204.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF432-204.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF432-204.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:06:22 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF432-205.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF432-205.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF432-205.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF432-205.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF432-205.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:06:23 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF432-206.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF432-206.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF432-206.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF432-206.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF432-206.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:06:23 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF432-207.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF432-207.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF432-207.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF432-207.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF432-207.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:06:23 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZNF433-201 - 673 4.5e-125 403.1 171.9 1 19 9.9e-05 0.11 13.0 5.3 1 24 118 151 118 153 0.80 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF433-201 - 673 4.5e-125 403.1 171.9 2 19 6.1e-06 0.0069 16.8 0.2 3 25 158 180 156 181 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF433-201 - 673 4.5e-125 403.1 171.9 3 19 5.9e-09 6.6e-06 26.3 0.4 1 23 184 206 184 207 0.97 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF433-201 - 673 4.5e-125 403.1 171.9 4 19 1.3e-10 1.5e-07 31.6 2.9 5 26 216 237 214 237 0.97 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF433-201 - 673 4.5e-125 403.1 171.9 5 19 9.2e-11 1e-07 32.0 1.8 1 25 240 264 240 265 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF433-201 - 673 4.5e-125 403.1 171.9 6 19 9e-11 1e-07 32.1 2.8 4 26 271 293 269 293 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF433-201 - 673 4.5e-125 403.1 171.9 7 19 8e-11 9e-08 32.2 3.8 3 26 298 321 296 321 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF433-201 - 673 4.5e-125 403.1 171.9 8 19 1.5e-07 0.00017 21.9 4.3 2 23 325 346 324 349 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF433-201 - 673 4.5e-125 403.1 171.9 9 19 8.6e-07 0.00097 19.5 0.6 2 24 353 375 352 377 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF433-201 - 673 4.5e-125 403.1 171.9 10 19 3.1e-11 3.4e-08 33.5 1.1 1 26 380 405 380 405 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF433-201 - 673 4.5e-125 403.1 171.9 11 19 5e-12 5.6e-09 36.0 2.4 2 25 409 432 408 433 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF433-201 - 673 4.5e-125 403.1 171.9 12 19 4.9e-08 5.5e-05 23.4 0.9 2 25 437 460 437 461 0.88 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF433-201 - 673 4.5e-125 403.1 171.9 13 19 8.1e-06 0.009 16.4 0.7 5 25 468 488 465 488 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF433-201 - 673 4.5e-125 403.1 171.9 14 19 1.6e-06 0.0018 18.6 6.0 4 25 495 516 493 517 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF433-201 - 673 4.5e-125 403.1 171.9 15 19 1.3e-10 1.5e-07 31.5 1.9 2 25 521 544 520 545 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF433-201 - 673 4.5e-125 403.1 171.9 16 19 3.8e-10 4.2e-07 30.1 0.3 5 25 552 572 548 573 0.88 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF433-201 - 673 4.5e-125 403.1 171.9 17 19 8.8e-10 9.9e-07 28.9 3.2 1 25 576 600 576 601 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF433-201 - 673 4.5e-125 403.1 171.9 18 19 1.1e-09 1.2e-06 28.7 2.2 2 25 605 628 604 629 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF433-201 - 673 4.5e-125 403.1 171.9 19 19 2e-10 2.3e-07 31.0 3.0 1 25 632 656 632 657 0.96 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZNF433-201 - 673 2e-74 242.1 176.8 1 20 0.19 2.2e+02 2.6 0.0 9 21 112 124 110 129 0.83 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF433-201 - 673 2e-74 242.1 176.8 2 20 0.00061 0.69 10.5 4.1 1 23 142 164 142 164 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF433-201 - 673 2e-74 242.1 176.8 3 20 1.1e-08 1.3e-05 25.4 1.3 1 23 170 192 170 192 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF433-201 - 673 2e-74 242.1 176.8 4 20 0.00048 0.53 10.8 1.6 1 23 198 220 198 220 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF433-201 - 673 2e-74 242.1 176.8 5 20 1.5e-08 1.7e-05 25.0 2.6 1 23 226 248 226 248 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF433-201 - 673 2e-74 242.1 176.8 6 20 3.5e-05 0.039 14.4 7.3 1 23 254 276 254 276 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF433-201 - 673 2e-74 242.1 176.8 7 20 2.8e-07 0.00031 21.0 2.5 1 23 282 304 282 304 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF433-201 - 673 2e-74 242.1 176.8 8 20 2.4e-06 0.0027 18.1 2.4 1 23 310 332 310 332 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF433-201 - 673 2e-74 242.1 176.8 9 20 5.2e-05 0.059 13.9 1.7 1 23 338 360 338 360 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF433-201 - 673 2e-74 242.1 176.8 10 20 5.1e-08 5.7e-05 23.3 2.1 1 23 366 388 366 388 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF433-201 - 673 2e-74 242.1 176.8 11 20 1e-07 0.00012 22.4 2.5 1 23 394 416 394 416 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF433-201 - 673 2e-74 242.1 176.8 12 20 1.7e-08 1.9e-05 24.8 0.4 1 23 422 444 422 444 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF433-201 - 673 2e-74 242.1 176.8 13 20 1.8e-06 0.002 18.5 0.9 1 23 450 472 450 472 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF433-201 - 673 2e-74 242.1 176.8 14 20 0.0036 4 8.1 0.8 7 23 484 500 478 500 0.85 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF433-201 - 673 2e-74 242.1 176.8 15 20 0.00015 0.17 12.4 5.1 1 23 506 528 506 528 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF433-201 - 673 2e-74 242.1 176.8 16 20 1.8e-08 2e-05 24.8 0.3 1 23 534 556 534 556 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF433-201 - 673 2e-74 242.1 176.8 17 20 1.2e-07 0.00013 22.2 0.8 1 23 562 584 562 584 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF433-201 - 673 2e-74 242.1 176.8 18 20 0.00019 0.21 12.1 1.9 1 23 590 612 590 612 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF433-201 - 673 2e-74 242.1 176.8 19 20 9.3e-07 0.001 19.4 2.5 1 23 618 640 618 640 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF433-201 - 673 2e-74 242.1 176.8 20 20 2.9e-06 0.0032 17.8 1.9 1 23 646 668 646 668 0.97 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZNF433-201 - 673 4.6e-54 176.4 170.7 1 19 6.5e-06 0.0073 17.1 3.9 1 23 142 164 142 165 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF433-201 - 673 4.6e-54 176.4 170.7 2 19 2.3e-06 0.0026 18.4 1.1 1 23 170 192 170 193 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF433-201 - 673 4.6e-54 176.4 170.7 3 19 0.0054 6 8.0 1.3 1 23 198 220 198 221 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF433-201 - 673 4.6e-54 176.4 170.7 4 19 5.1e-06 0.0057 17.4 2.2 1 23 226 248 226 249 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF433-201 - 673 4.6e-54 176.4 170.7 5 19 0.00013 0.15 13.0 6.2 1 23 254 276 254 277 0.97 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF433-201 - 673 4.6e-54 176.4 170.7 6 19 1.6e-06 0.0018 18.9 2.3 1 23 282 304 282 305 0.97 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF433-201 - 673 4.6e-54 176.4 170.7 7 19 7.9e-07 0.00089 19.9 2.5 1 23 310 332 310 333 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF433-201 - 673 4.6e-54 176.4 170.7 8 19 3.9e-05 0.044 14.6 1.4 1 23 338 360 338 361 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF433-201 - 673 4.6e-54 176.4 170.7 9 19 9.8e-07 0.0011 19.6 1.8 1 23 366 388 366 389 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF433-201 - 673 4.6e-54 176.4 170.7 10 19 9.3e-07 0.001 19.7 1.7 1 23 394 416 394 417 0.97 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF433-201 - 673 4.6e-54 176.4 170.7 11 19 6.2e-05 0.069 14.0 0.5 1 20 422 441 422 445 0.88 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF433-201 - 673 4.6e-54 176.4 170.7 12 19 4.8e-05 0.054 14.3 1.1 1 23 450 472 450 473 0.91 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF433-201 - 673 4.6e-54 176.4 170.7 13 19 0.074 83 4.4 0.5 7 23 484 500 478 501 0.79 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF433-201 - 673 4.6e-54 176.4 170.7 14 19 0.00012 0.13 13.2 4.0 1 19 506 524 506 529 0.89 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF433-201 - 673 4.6e-54 176.4 170.7 15 19 5.1e-05 0.057 14.3 0.3 1 19 534 552 534 557 0.89 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF433-201 - 673 4.6e-54 176.4 170.7 16 19 0.00029 0.32 11.9 0.7 1 19 562 580 562 585 0.88 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF433-201 - 673 4.6e-54 176.4 170.7 17 19 0.00029 0.33 11.9 1.7 1 19 590 608 590 613 0.88 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF433-201 - 673 4.6e-54 176.4 170.7 18 19 1.5e-05 0.016 16.0 2.0 1 21 618 638 618 641 0.90 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF433-201 - 673 4.6e-54 176.4 170.7 19 19 1.8e-05 0.021 15.7 2.0 1 19 646 664 646 668 0.92 C2H2-type zinc finger KRAB PF01352.27 42 ZNF433-201 - 673 1.1e-23 82.5 0.1 1 1 1.6e-26 1.8e-23 81.9 0.1 1 42 6 47 6 47 0.98 KRAB box zf-C2H2_6 PF13912.6 27 ZNF433-201 - 673 8.3e-23 79.9 169.2 1 19 0.013 15 5.7 3.8 2 24 142 164 142 166 0.81 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF433-201 - 673 8.3e-23 79.9 169.2 2 19 7.4e-05 0.083 12.9 0.7 2 25 170 193 169 194 0.95 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF433-201 - 673 8.3e-23 79.9 169.2 3 19 0.32 3.6e+02 1.3 0.7 2 9 198 205 198 207 0.89 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF433-201 - 673 8.3e-23 79.9 169.2 4 19 7.5 8.4e+03 -3.0 0.5 20 24 216 220 216 222 0.91 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF433-201 - 673 8.3e-23 79.9 169.2 5 19 0.00071 0.79 9.8 3.0 2 24 226 248 226 251 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF433-201 - 673 8.3e-23 79.9 169.2 6 19 4.2e-05 0.048 13.7 7.6 2 24 254 276 254 279 0.96 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF433-201 - 673 8.3e-23 79.9 169.2 7 19 0.00041 0.46 10.5 2.2 2 13 282 293 282 305 0.88 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF433-201 - 673 8.3e-23 79.9 169.2 8 19 0.0018 2 8.5 2.4 2 12 310 320 310 335 0.83 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF433-201 - 673 8.3e-23 79.9 169.2 9 19 0.002 2.2 8.3 1.3 2 16 338 352 338 361 0.84 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF433-201 - 673 8.3e-23 79.9 169.2 10 19 9.7e-06 0.011 15.7 2.6 2 24 366 388 365 391 0.95 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF433-201 - 673 8.3e-23 79.9 169.2 11 19 0.00033 0.37 10.8 2.5 2 24 394 416 394 419 0.89 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF433-201 - 673 8.3e-23 79.9 169.2 12 19 3.7e-05 0.041 13.9 1.0 2 24 422 444 422 447 0.89 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF433-201 - 673 8.3e-23 79.9 169.2 13 19 0.026 29 4.8 0.8 2 12 450 460 450 462 0.88 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF433-201 - 673 8.3e-23 79.9 169.2 14 19 0.0017 1.9 8.6 2.6 2 12 506 516 505 523 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF433-201 - 673 8.3e-23 79.9 169.2 15 19 7.9e-05 0.089 12.8 0.5 2 15 534 547 534 558 0.78 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF433-201 - 673 8.3e-23 79.9 169.2 16 19 4.2e-05 0.047 13.7 2.3 2 24 562 584 562 587 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF433-201 - 673 8.3e-23 79.9 169.2 17 19 0.00025 0.29 11.2 1.5 2 12 590 600 590 614 0.80 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF433-201 - 673 8.3e-23 79.9 169.2 18 19 0.00096 1.1 9.4 2.2 2 24 618 640 618 643 0.88 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF433-201 - 673 8.3e-23 79.9 169.2 19 19 0.00098 1.1 9.3 0.9 2 12 646 656 646 656 0.94 C2H2-type zinc finger zf-C2H2_jaz PF12171.8 27 ZNF433-201 - 673 5.3e-19 68.0 123.6 1 19 0.013 14 6.1 1.9 2 21 142 161 141 162 0.85 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF433-201 - 673 5.3e-19 68.0 123.6 2 19 5.1e-06 0.0057 16.9 0.2 2 20 170 188 169 189 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF433-201 - 673 5.3e-19 68.0 123.6 3 19 2.3 2.6e+03 -1.1 0.8 2 9 198 205 197 206 0.86 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF433-201 - 673 5.3e-19 68.0 123.6 4 19 0.0013 1.5 9.2 0.7 4 24 228 248 225 248 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF433-201 - 673 5.3e-19 68.0 123.6 5 19 0.046 51 4.3 3.6 2 24 254 276 253 276 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF433-201 - 673 5.3e-19 68.0 123.6 6 19 1.7e-05 0.019 15.2 1.6 2 24 282 304 281 304 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF433-201 - 673 5.3e-19 68.0 123.6 7 19 0.0008 0.9 9.9 0.7 2 24 310 332 309 335 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF433-201 - 673 5.3e-19 68.0 123.6 8 19 0.017 19 5.7 0.3 2 21 338 357 337 357 0.89 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF433-201 - 673 5.3e-19 68.0 123.6 9 19 3.2e-06 0.0035 17.6 1.7 2 24 366 388 365 388 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF433-201 - 673 5.3e-19 68.0 123.6 10 19 0.00013 0.15 12.4 1.6 2 24 394 416 393 416 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF433-201 - 673 5.3e-19 68.0 123.6 11 19 0.00021 0.23 11.8 0.0 2 20 422 440 421 444 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF433-201 - 673 5.3e-19 68.0 123.6 12 19 0.011 12 6.3 0.3 2 22 450 470 449 470 0.89 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF433-201 - 673 5.3e-19 68.0 123.6 13 19 7.7 8.7e+03 -2.8 0.2 9 24 485 500 485 500 0.76 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF433-201 - 673 5.3e-19 68.0 123.6 14 19 0.12 1.3e+02 3.0 1.8 2 20 506 524 505 528 0.88 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF433-201 - 673 5.3e-19 68.0 123.6 15 19 0.00019 0.22 11.9 0.1 2 20 534 552 533 556 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF433-201 - 673 5.3e-19 68.0 123.6 16 19 0.00099 1.1 9.6 0.1 2 20 562 580 561 584 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF433-201 - 673 5.3e-19 68.0 123.6 17 19 0.093 1e+02 3.3 0.2 2 19 590 607 589 611 0.78 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF433-201 - 673 5.3e-19 68.0 123.6 18 19 0.22 2.5e+02 2.1 0.2 2 20 618 636 617 640 0.82 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF433-201 - 673 5.3e-19 68.0 123.6 19 19 0.2 2.2e+02 2.3 1.0 2 20 646 664 645 664 0.93 Zinc-finger double-stranded RNA-binding Zn-ribbon_8 PF09723.10 40 ZNF433-201 - 673 2.8e-10 40.2 121.1 1 17 0.13 1.5e+02 2.6 8.6 6 34 142 177 132 178 0.71 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF433-201 - 673 2.8e-10 40.2 121.1 2 17 0.0004 0.45 10.7 1.9 6 35 170 206 168 208 0.84 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF433-201 - 673 2.8e-10 40.2 121.1 3 17 0.00025 0.28 11.3 4.7 6 34 226 261 225 265 0.80 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF433-201 - 673 2.8e-10 40.2 121.1 4 17 0.00085 0.95 9.6 6.6 6 34 254 289 253 292 0.82 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF433-201 - 673 2.8e-10 40.2 121.1 5 17 0.00037 0.42 10.8 6.5 6 34 282 317 280 319 0.74 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF433-201 - 673 2.8e-10 40.2 121.1 6 17 0.0012 1.4 9.1 7.7 6 34 310 345 309 351 0.79 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF433-201 - 673 2.8e-10 40.2 121.1 7 17 0.012 14 5.9 2.7 6 34 338 373 336 377 0.73 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF433-201 - 673 2.8e-10 40.2 121.1 8 17 0.61 6.9e+02 0.5 0.2 7 16 367 376 365 388 0.77 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF433-201 - 673 2.8e-10 40.2 121.1 9 17 0.00023 0.25 11.5 5.4 6 36 394 431 393 434 0.72 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF433-201 - 673 2.8e-10 40.2 121.1 10 17 0.0062 6.9 6.9 0.4 6 16 422 432 421 444 0.83 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF433-201 - 673 2.8e-10 40.2 121.1 11 17 0.001 1.2 9.4 0.9 6 29 450 480 448 489 0.75 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF433-201 - 673 2.8e-10 40.2 121.1 12 17 0.003 3.3 7.9 8.2 6 36 506 543 505 546 0.80 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF433-201 - 673 2.8e-10 40.2 121.1 13 17 0.00068 0.77 9.9 5.4 6 34 534 569 523 571 0.86 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF433-201 - 673 2.8e-10 40.2 121.1 14 17 0.0014 1.5 9.0 5.2 6 34 562 597 561 598 0.83 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF433-201 - 673 2.8e-10 40.2 121.1 15 17 0.0032 3.6 7.8 7.3 6 34 590 625 589 627 0.81 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF433-201 - 673 2.8e-10 40.2 121.1 16 17 0.016 18 5.6 0.8 6 15 618 627 617 635 0.92 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF433-201 - 673 2.8e-10 40.2 121.1 17 17 0.0073 8.2 6.6 1.8 6 16 646 656 645 669 0.81 Zinc ribbon domain DUF3268 PF11672.8 118 ZNF433-201 - 673 3.8e-07 30.5 80.9 1 12 0.0001 0.11 12.8 2.3 2 44 141 183 140 189 0.87 zinc-finger-containing domain DUF3268 PF11672.8 118 ZNF433-201 - 673 3.8e-07 30.5 80.9 2 12 1.8e-05 0.021 15.2 0.6 3 38 198 233 196 248 0.87 zinc-finger-containing domain DUF3268 PF11672.8 118 ZNF433-201 - 673 3.8e-07 30.5 80.9 3 12 0.00045 0.51 10.7 2.3 2 38 225 261 224 279 0.87 zinc-finger-containing domain DUF3268 PF11672.8 118 ZNF433-201 - 673 3.8e-07 30.5 80.9 4 12 0.00043 0.48 10.7 2.9 2 46 281 331 280 338 0.76 zinc-finger-containing domain DUF3268 PF11672.8 118 ZNF433-201 - 673 3.8e-07 30.5 80.9 5 12 0.14 1.6e+02 2.6 1.2 2 37 337 372 336 388 0.87 zinc-finger-containing domain DUF3268 PF11672.8 118 ZNF433-201 - 673 3.8e-07 30.5 80.9 6 12 0.0033 3.7 7.9 1.4 3 38 366 401 364 408 0.90 zinc-finger-containing domain DUF3268 PF11672.8 118 ZNF433-201 - 673 3.8e-07 30.5 80.9 7 12 0.001 1.1 9.6 1.8 2 39 393 430 392 445 0.81 zinc-finger-containing domain DUF3268 PF11672.8 118 ZNF433-201 - 673 3.8e-07 30.5 80.9 8 12 0.0086 9.7 6.6 0.9 2 37 421 456 420 469 0.88 zinc-finger-containing domain DUF3268 PF11672.8 118 ZNF433-201 - 673 3.8e-07 30.5 80.9 9 12 0.69 7.8e+02 0.4 0.2 2 34 449 481 448 486 0.84 zinc-finger-containing domain DUF3268 PF11672.8 118 ZNF433-201 - 673 3.8e-07 30.5 80.9 10 12 0.0037 4.1 7.7 3.8 2 42 505 545 504 559 0.78 zinc-finger-containing domain DUF3268 PF11672.8 118 ZNF433-201 - 673 3.8e-07 30.5 80.9 11 12 0.00078 0.87 9.9 2.3 2 45 561 604 560 615 0.88 zinc-finger-containing domain DUF3268 PF11672.8 118 ZNF433-201 - 673 3.8e-07 30.5 80.9 12 12 0.038 42 4.5 3.9 2 45 617 660 616 666 0.87 zinc-finger-containing domain zf_UBZ PF18439.1 32 ZNF433-201 - 673 6.6e-07 28.8 98.9 1 18 0.084 94 2.7 0.9 3 21 142 161 140 161 0.89 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF433-201 - 673 6.6e-07 28.8 98.9 2 18 0.00016 0.18 11.4 0.2 3 20 170 188 168 189 0.86 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF433-201 - 673 6.6e-07 28.8 98.9 3 18 1.6 1.8e+03 -1.4 0.2 3 10 198 205 196 207 0.85 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF433-201 - 673 6.6e-07 28.8 98.9 4 18 0.0029 3.3 7.4 0.2 3 15 226 238 224 245 0.82 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF433-201 - 673 6.6e-07 28.8 98.9 5 18 0.028 32 4.2 0.6 3 15 254 266 252 272 0.86 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF433-201 - 673 6.6e-07 28.8 98.9 6 18 0.0024 2.7 7.7 0.6 3 20 282 300 280 301 0.86 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF433-201 - 673 6.6e-07 28.8 98.9 7 18 0.017 19 4.9 1.1 3 15 310 322 308 329 0.79 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF433-201 - 673 6.6e-07 28.8 98.9 8 18 0.053 59 3.4 0.1 3 13 338 348 336 357 0.76 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF433-201 - 673 6.6e-07 28.8 98.9 9 18 0.0093 10 5.8 0.3 3 21 366 385 365 385 0.91 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF433-201 - 673 6.6e-07 28.8 98.9 10 18 0.018 20 4.9 0.1 3 15 394 406 392 413 0.80 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF433-201 - 673 6.6e-07 28.8 98.9 11 18 0.0061 6.8 6.4 0.1 3 20 422 440 420 440 0.83 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF433-201 - 673 6.6e-07 28.8 98.9 12 18 0.0076 8.5 6.1 0.1 3 13 450 460 448 466 0.87 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF433-201 - 673 6.6e-07 28.8 98.9 13 18 0.011 12 5.6 0.9 2 15 505 518 504 524 0.85 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF433-201 - 673 6.6e-07 28.8 98.9 14 18 0.0095 11 5.8 0.2 3 18 534 550 532 552 0.80 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF433-201 - 673 6.6e-07 28.8 98.9 15 18 0.03 34 4.2 0.1 3 13 562 572 560 580 0.80 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF433-201 - 673 6.6e-07 28.8 98.9 16 18 0.017 19 4.9 0.6 3 15 590 602 588 608 0.80 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF433-201 - 673 6.6e-07 28.8 98.9 17 18 0.049 55 3.5 0.7 3 12 618 627 616 633 0.87 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF433-201 - 673 6.6e-07 28.8 98.9 18 18 0.012 14 5.4 0.6 3 19 646 663 644 664 0.82 Ubiquitin-Binding Zinc Finger # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF433-201.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF433-201.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF433-201.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF433-201.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF433-201.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:06:24 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF433-202.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF433-202.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF433-202.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF433-202.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF433-202.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:06:24 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZNF433-203 - 638 1.7e-125 404.4 172.2 1 19 0.00011 0.13 12.8 5.6 1 24 83 116 83 118 0.80 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF433-203 - 638 1.7e-125 404.4 172.2 2 19 5.8e-06 0.0064 16.9 0.2 3 25 123 145 121 146 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF433-203 - 638 1.7e-125 404.4 172.2 3 19 5.6e-09 6.2e-06 26.4 0.4 1 23 149 171 149 172 0.97 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF433-203 - 638 1.7e-125 404.4 172.2 4 19 1.2e-10 1.4e-07 31.6 2.9 5 26 181 202 179 202 0.97 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF433-203 - 638 1.7e-125 404.4 172.2 5 19 8.7e-11 9.7e-08 32.1 1.8 1 25 205 229 205 230 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF433-203 - 638 1.7e-125 404.4 172.2 6 19 8.5e-11 9.5e-08 32.1 2.8 4 26 236 258 234 258 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF433-203 - 638 1.7e-125 404.4 172.2 7 19 7.5e-11 8.5e-08 32.3 3.8 3 26 263 286 261 286 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF433-203 - 638 1.7e-125 404.4 172.2 8 19 1.4e-07 0.00016 22.0 4.3 2 23 290 311 289 314 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF433-203 - 638 1.7e-125 404.4 172.2 9 19 8.1e-07 0.00091 19.6 0.6 2 24 318 340 317 342 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF433-203 - 638 1.7e-125 404.4 172.2 10 19 2.9e-11 3.2e-08 33.6 1.1 1 26 345 370 345 370 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF433-203 - 638 1.7e-125 404.4 172.2 11 19 4.7e-12 5.3e-09 36.1 2.4 2 25 374 397 373 398 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF433-203 - 638 1.7e-125 404.4 172.2 12 19 4.6e-08 5.1e-05 23.5 0.9 2 25 402 425 402 426 0.88 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF433-203 - 638 1.7e-125 404.4 172.2 13 19 7.6e-06 0.0085 16.5 0.7 5 25 433 453 430 453 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF433-203 - 638 1.7e-125 404.4 172.2 14 19 1.5e-06 0.0017 18.7 6.0 4 25 460 481 458 482 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF433-203 - 638 1.7e-125 404.4 172.2 15 19 1.3e-10 1.4e-07 31.6 1.9 2 25 486 509 485 510 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF433-203 - 638 1.7e-125 404.4 172.2 16 19 3.5e-10 4e-07 30.2 0.3 5 25 517 537 513 538 0.88 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF433-203 - 638 1.7e-125 404.4 172.2 17 19 8.3e-10 9.3e-07 29.0 3.2 1 25 541 565 541 566 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF433-203 - 638 1.7e-125 404.4 172.2 18 19 1e-09 1.1e-06 28.8 2.2 2 25 570 593 569 594 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF433-203 - 638 1.7e-125 404.4 172.2 19 19 1.9e-10 2.1e-07 31.0 3.0 1 25 597 621 597 622 0.96 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZNF433-203 - 638 6.2e-75 243.7 176.8 1 20 0.18 2e+02 2.7 0.0 9 21 77 89 75 94 0.83 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF433-203 - 638 6.2e-75 243.7 176.8 2 20 0.00058 0.65 10.6 4.1 1 23 107 129 107 129 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF433-203 - 638 6.2e-75 243.7 176.8 3 20 1.1e-08 1.2e-05 25.5 1.3 1 23 135 157 135 157 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF433-203 - 638 6.2e-75 243.7 176.8 4 20 0.00045 0.5 10.9 1.6 1 23 163 185 163 185 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF433-203 - 638 6.2e-75 243.7 176.8 5 20 1.4e-08 1.6e-05 25.1 2.6 1 23 191 213 191 213 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF433-203 - 638 6.2e-75 243.7 176.8 6 20 3.3e-05 0.037 14.5 7.3 1 23 219 241 219 241 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF433-203 - 638 6.2e-75 243.7 176.8 7 20 2.6e-07 0.00029 21.1 2.5 1 23 247 269 247 269 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF433-203 - 638 6.2e-75 243.7 176.8 8 20 2.3e-06 0.0026 18.1 2.4 1 23 275 297 275 297 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF433-203 - 638 6.2e-75 243.7 176.8 9 20 4.9e-05 0.055 13.9 1.7 1 23 303 325 303 325 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF433-203 - 638 6.2e-75 243.7 176.8 10 20 4.8e-08 5.4e-05 23.4 2.1 1 23 331 353 331 353 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF433-203 - 638 6.2e-75 243.7 176.8 11 20 9.6e-08 0.00011 22.5 2.5 1 23 359 381 359 381 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF433-203 - 638 6.2e-75 243.7 176.8 12 20 1.6e-08 1.8e-05 24.9 0.4 1 23 387 409 387 409 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF433-203 - 638 6.2e-75 243.7 176.8 13 20 1.7e-06 0.0019 18.6 0.9 1 23 415 437 415 437 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF433-203 - 638 6.2e-75 243.7 176.8 14 20 0.0034 3.8 8.2 0.8 7 23 449 465 443 465 0.85 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF433-203 - 638 6.2e-75 243.7 176.8 15 20 0.00014 0.16 12.5 5.1 1 23 471 493 471 493 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF433-203 - 638 6.2e-75 243.7 176.8 16 20 1.6e-08 1.8e-05 24.9 0.3 1 23 499 521 499 521 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF433-203 - 638 6.2e-75 243.7 176.8 17 20 1.1e-07 0.00012 22.3 0.8 1 23 527 549 527 549 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF433-203 - 638 6.2e-75 243.7 176.8 18 20 0.00018 0.2 12.2 1.9 1 23 555 577 555 577 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF433-203 - 638 6.2e-75 243.7 176.8 19 20 8.7e-07 0.00097 19.5 2.5 1 23 583 605 583 605 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF433-203 - 638 6.2e-75 243.7 176.8 20 20 2.7e-06 0.003 17.9 1.9 1 23 611 633 611 633 0.97 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZNF433-203 - 638 1.4e-54 178.0 170.7 1 19 6.1e-06 0.0068 17.1 3.9 1 23 107 129 107 130 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF433-203 - 638 1.4e-54 178.0 170.7 2 19 2.2e-06 0.0025 18.5 1.1 1 23 135 157 135 158 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF433-203 - 638 1.4e-54 178.0 170.7 3 19 0.005 5.6 8.1 1.3 1 23 163 185 163 186 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF433-203 - 638 1.4e-54 178.0 170.7 4 19 4.8e-06 0.0053 17.5 2.2 1 23 191 213 191 214 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF433-203 - 638 1.4e-54 178.0 170.7 5 19 0.00012 0.14 13.1 6.2 1 23 219 241 219 242 0.97 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF433-203 - 638 1.4e-54 178.0 170.7 6 19 1.5e-06 0.0017 19.0 2.3 1 23 247 269 247 270 0.97 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF433-203 - 638 1.4e-54 178.0 170.7 7 19 7.5e-07 0.00084 20.0 2.5 1 23 275 297 275 298 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF433-203 - 638 1.4e-54 178.0 170.7 8 19 3.6e-05 0.041 14.7 1.4 1 23 303 325 303 326 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF433-203 - 638 1.4e-54 178.0 170.7 9 19 9.2e-07 0.001 19.7 1.8 1 23 331 353 331 354 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF433-203 - 638 1.4e-54 178.0 170.7 10 19 8.7e-07 0.00097 19.8 1.7 1 23 359 381 359 382 0.97 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF433-203 - 638 1.4e-54 178.0 170.7 11 19 5.8e-05 0.065 14.1 0.5 1 20 387 406 387 410 0.88 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF433-203 - 638 1.4e-54 178.0 170.7 12 19 4.5e-05 0.051 14.4 1.1 1 23 415 437 415 438 0.91 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF433-203 - 638 1.4e-54 178.0 170.7 13 19 0.069 78 4.5 0.5 7 23 449 465 443 466 0.79 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF433-203 - 638 1.4e-54 178.0 170.7 14 19 0.00011 0.12 13.3 4.0 1 19 471 489 471 494 0.89 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF433-203 - 638 1.4e-54 178.0 170.7 15 19 4.8e-05 0.054 14.4 0.3 1 19 499 517 499 522 0.89 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF433-203 - 638 1.4e-54 178.0 170.7 16 19 0.00027 0.3 12.0 0.7 1 19 527 545 527 550 0.88 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF433-203 - 638 1.4e-54 178.0 170.7 17 19 0.00027 0.31 12.0 1.7 1 19 555 573 555 578 0.88 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF433-203 - 638 1.4e-54 178.0 170.7 18 19 1.4e-05 0.015 16.0 2.0 1 21 583 603 583 606 0.90 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF433-203 - 638 1.4e-54 178.0 170.7 19 19 1.7e-05 0.019 15.7 2.0 1 19 611 629 611 633 0.92 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF433-203 - 638 2.8e-23 81.4 169.2 1 19 0.013 14 5.8 3.8 2 24 107 129 107 131 0.81 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF433-203 - 638 2.8e-23 81.4 169.2 2 19 7e-05 0.078 13.0 0.7 2 25 135 158 134 159 0.95 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF433-203 - 638 2.8e-23 81.4 169.2 3 19 0.3 3.4e+02 1.4 0.7 2 9 163 170 163 172 0.89 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF433-203 - 638 2.8e-23 81.4 169.2 4 19 7 7.9e+03 -3.0 0.5 20 24 181 185 181 187 0.91 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF433-203 - 638 2.8e-23 81.4 169.2 5 19 0.00067 0.75 9.9 3.0 2 24 191 213 191 216 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF433-203 - 638 2.8e-23 81.4 169.2 6 19 4e-05 0.045 13.8 7.6 2 24 219 241 219 244 0.96 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF433-203 - 638 2.8e-23 81.4 169.2 7 19 0.00039 0.43 10.6 2.2 2 13 247 258 247 270 0.88 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF433-203 - 638 2.8e-23 81.4 169.2 8 19 0.0017 1.9 8.6 2.4 2 12 275 285 275 300 0.83 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF433-203 - 638 2.8e-23 81.4 169.2 9 19 0.0019 2.1 8.4 1.3 2 16 303 317 303 326 0.84 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF433-203 - 638 2.8e-23 81.4 169.2 10 19 9.1e-06 0.01 15.8 2.6 2 24 331 353 330 356 0.95 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF433-203 - 638 2.8e-23 81.4 169.2 11 19 0.00031 0.35 10.9 2.5 2 24 359 381 359 384 0.89 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF433-203 - 638 2.8e-23 81.4 169.2 12 19 3.5e-05 0.039 14.0 1.0 2 24 387 409 387 412 0.89 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF433-203 - 638 2.8e-23 81.4 169.2 13 19 0.024 27 4.9 0.8 2 12 415 425 415 427 0.88 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF433-203 - 638 2.8e-23 81.4 169.2 14 19 0.0016 1.8 8.7 2.6 2 12 471 481 470 488 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF433-203 - 638 2.8e-23 81.4 169.2 15 19 7.5e-05 0.084 12.9 0.5 2 15 499 512 499 523 0.78 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF433-203 - 638 2.8e-23 81.4 169.2 16 19 3.9e-05 0.044 13.8 2.3 2 24 527 549 527 552 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF433-203 - 638 2.8e-23 81.4 169.2 17 19 0.00024 0.27 11.3 1.5 2 12 555 565 555 579 0.80 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF433-203 - 638 2.8e-23 81.4 169.2 18 19 0.00091 1 9.4 2.2 2 24 583 605 583 608 0.88 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF433-203 - 638 2.8e-23 81.4 169.2 19 19 0.00093 1 9.4 0.9 2 12 611 621 611 621 0.94 C2H2-type zinc finger zf-C2H2_jaz PF12171.8 27 ZNF433-203 - 638 1.8e-19 69.5 123.6 1 19 0.012 14 6.2 1.9 2 21 107 126 106 127 0.85 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF433-203 - 638 1.8e-19 69.5 123.6 2 19 4.8e-06 0.0053 17.0 0.2 2 20 135 153 134 154 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF433-203 - 638 1.8e-19 69.5 123.6 3 19 2.2 2.4e+03 -1.0 0.8 2 9 163 170 162 171 0.86 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF433-203 - 638 1.8e-19 69.5 123.6 4 19 0.0012 1.4 9.3 0.7 4 24 193 213 190 213 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF433-203 - 638 1.8e-19 69.5 123.6 5 19 0.043 48 4.4 3.6 2 24 219 241 218 241 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF433-203 - 638 1.8e-19 69.5 123.6 6 19 1.6e-05 0.018 15.3 1.6 2 24 247 269 246 269 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF433-203 - 638 1.8e-19 69.5 123.6 7 19 0.00075 0.84 10.0 0.7 2 24 275 297 274 300 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF433-203 - 638 1.8e-19 69.5 123.6 8 19 0.016 18 5.8 0.3 2 21 303 322 302 322 0.89 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF433-203 - 638 1.8e-19 69.5 123.6 9 19 3e-06 0.0033 17.7 1.7 2 24 331 353 330 353 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF433-203 - 638 1.8e-19 69.5 123.6 10 19 0.00012 0.14 12.5 1.6 2 24 359 381 358 381 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF433-203 - 638 1.8e-19 69.5 123.6 11 19 0.0002 0.22 11.9 0.0 2 20 387 405 386 409 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF433-203 - 638 1.8e-19 69.5 123.6 12 19 0.0099 11 6.4 0.3 2 22 415 435 414 435 0.89 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF433-203 - 638 1.8e-19 69.5 123.6 13 19 7.3 8.2e+03 -2.7 0.2 9 24 450 465 450 465 0.76 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF433-203 - 638 1.8e-19 69.5 123.6 14 19 0.11 1.2e+02 3.1 1.8 2 20 471 489 470 493 0.88 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF433-203 - 638 1.8e-19 69.5 123.6 15 19 0.00018 0.2 12.0 0.1 2 20 499 517 498 521 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF433-203 - 638 1.8e-19 69.5 123.6 16 19 0.00093 1 9.7 0.1 2 20 527 545 526 549 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF433-203 - 638 1.8e-19 69.5 123.6 17 19 0.087 98 3.4 0.2 2 19 555 572 554 576 0.78 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF433-203 - 638 1.8e-19 69.5 123.6 18 19 0.21 2.3e+02 2.2 0.2 2 20 583 601 582 605 0.82 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF433-203 - 638 1.8e-19 69.5 123.6 19 19 0.18 2.1e+02 2.4 1.0 2 20 611 629 610 629 0.93 Zinc-finger double-stranded RNA-binding Zn-ribbon_8 PF09723.10 40 ZNF433-203 - 638 6.9e-11 42.1 120.3 1 17 0.13 1.4e+02 2.7 8.6 6 34 107 142 97 143 0.71 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF433-203 - 638 6.9e-11 42.1 120.3 2 17 0.00031 0.35 11.0 1.6 6 35 135 171 133 173 0.84 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF433-203 - 638 6.9e-11 42.1 120.3 3 17 0.00028 0.31 11.2 4.9 6 34 191 226 190 229 0.80 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF433-203 - 638 6.9e-11 42.1 120.3 4 17 0.0008 0.9 9.7 6.6 6 34 219 254 217 257 0.83 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF433-203 - 638 6.9e-11 42.1 120.3 5 17 0.00038 0.43 10.7 6.6 6 34 247 282 245 284 0.74 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF433-203 - 638 6.9e-11 42.1 120.3 6 17 0.00098 1.1 9.4 7.5 6 34 275 310 274 316 0.79 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF433-203 - 638 6.9e-11 42.1 120.3 7 17 0.009 10 6.4 2.3 6 34 303 338 301 341 0.73 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF433-203 - 638 6.9e-11 42.1 120.3 8 17 0.55 6.1e+02 0.6 0.1 7 15 332 340 329 353 0.78 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF433-203 - 638 6.9e-11 42.1 120.3 9 17 0.00025 0.28 11.3 5.6 6 36 359 396 358 399 0.72 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF433-203 - 638 6.9e-11 42.1 120.3 10 17 0.0059 6.6 6.9 0.5 6 16 387 397 386 410 0.83 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF433-203 - 638 6.9e-11 42.1 120.3 11 17 0.00099 1.1 9.4 0.9 6 29 415 445 414 454 0.74 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF433-203 - 638 6.9e-11 42.1 120.3 12 17 0.0028 3.1 8.0 8.3 6 36 471 508 470 511 0.80 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF433-203 - 638 6.9e-11 42.1 120.3 13 17 0.00048 0.53 10.4 4.9 6 34 499 534 498 536 0.83 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF433-203 - 638 6.9e-11 42.1 120.3 14 17 0.0011 1.3 9.3 5.0 6 34 527 562 526 563 0.83 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF433-203 - 638 6.9e-11 42.1 120.3 15 17 0.0024 2.7 8.2 7.1 6 34 555 590 554 593 0.82 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF433-203 - 638 6.9e-11 42.1 120.3 16 17 0.015 16 5.7 0.7 6 15 583 592 582 600 0.92 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF433-203 - 638 6.9e-11 42.1 120.3 17 17 0.0069 7.7 6.7 1.8 6 16 611 621 610 634 0.81 Zinc ribbon domain DUF3268 PF11672.8 118 ZNF433-203 - 638 2.2e-07 31.2 81.0 1 12 9.5e-05 0.11 12.9 2.3 2 44 106 148 105 154 0.87 zinc-finger-containing domain DUF3268 PF11672.8 118 ZNF433-203 - 638 2.2e-07 31.2 81.0 2 12 2.9e-05 0.032 14.5 0.8 3 37 163 197 161 203 0.92 zinc-finger-containing domain DUF3268 PF11672.8 118 ZNF433-203 - 638 2.2e-07 31.2 81.0 3 12 0.0004 0.45 10.9 2.3 2 38 190 226 189 244 0.87 zinc-finger-containing domain DUF3268 PF11672.8 118 ZNF433-203 - 638 2.2e-07 31.2 81.0 4 12 0.00034 0.38 11.1 2.6 2 45 246 295 245 302 0.76 zinc-finger-containing domain DUF3268 PF11672.8 118 ZNF433-203 - 638 2.2e-07 31.2 81.0 5 12 0.13 1.5e+02 2.8 1.2 2 37 302 337 301 353 0.87 zinc-finger-containing domain DUF3268 PF11672.8 118 ZNF433-203 - 638 2.2e-07 31.2 81.0 6 12 0.0032 3.6 7.9 1.8 3 38 331 366 329 384 0.88 zinc-finger-containing domain DUF3268 PF11672.8 118 ZNF433-203 - 638 2.2e-07 31.2 81.0 7 12 0.00085 0.96 9.8 1.7 2 39 358 395 357 412 0.81 zinc-finger-containing domain DUF3268 PF11672.8 118 ZNF433-203 - 638 2.2e-07 31.2 81.0 8 12 0.0093 10 6.5 0.9 2 37 386 421 385 425 0.87 zinc-finger-containing domain DUF3268 PF11672.8 118 ZNF433-203 - 638 2.2e-07 31.2 81.0 9 12 0.65 7.3e+02 0.5 0.2 2 34 414 446 413 451 0.84 zinc-finger-containing domain DUF3268 PF11672.8 118 ZNF433-203 - 638 2.2e-07 31.2 81.0 10 12 0.0033 3.7 7.9 3.7 2 42 470 510 469 524 0.78 zinc-finger-containing domain DUF3268 PF11672.8 118 ZNF433-203 - 638 2.2e-07 31.2 81.0 11 12 0.00072 0.81 10.0 2.3 2 45 526 569 525 580 0.88 zinc-finger-containing domain DUF3268 PF11672.8 118 ZNF433-203 - 638 2.2e-07 31.2 81.0 12 12 0.035 39 4.6 3.9 2 45 582 625 581 632 0.87 zinc-finger-containing domain zf_UBZ PF18439.1 32 ZNF433-203 - 638 2.4e-07 30.2 98.9 1 18 0.079 88 2.8 0.9 3 21 107 126 105 126 0.89 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF433-203 - 638 2.4e-07 30.2 98.9 2 18 0.00015 0.17 11.5 0.2 3 20 135 153 133 154 0.86 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF433-203 - 638 2.4e-07 30.2 98.9 3 18 1.5 1.7e+03 -1.3 0.2 3 10 163 170 161 172 0.85 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF433-203 - 638 2.4e-07 30.2 98.9 4 18 0.0028 3.1 7.5 0.2 3 15 191 203 189 210 0.82 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF433-203 - 638 2.4e-07 30.2 98.9 5 18 0.027 30 4.3 0.6 3 15 219 231 217 237 0.86 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF433-203 - 638 2.4e-07 30.2 98.9 6 18 0.0023 2.5 7.7 0.6 3 20 247 265 245 266 0.86 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF433-203 - 638 2.4e-07 30.2 98.9 7 18 0.016 18 5.0 1.1 3 15 275 287 273 294 0.79 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF433-203 - 638 2.4e-07 30.2 98.9 8 18 0.05 56 3.5 0.1 3 13 303 313 301 322 0.76 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF433-203 - 638 2.4e-07 30.2 98.9 9 18 0.0088 9.8 5.9 0.3 3 21 331 350 330 350 0.91 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF433-203 - 638 2.4e-07 30.2 98.9 10 18 0.017 19 5.0 0.1 3 15 359 371 357 378 0.80 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF433-203 - 638 2.4e-07 30.2 98.9 11 18 0.0057 6.4 6.5 0.1 3 20 387 405 385 405 0.83 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF433-203 - 638 2.4e-07 30.2 98.9 12 18 0.0071 8 6.2 0.1 3 13 415 425 413 431 0.87 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF433-203 - 638 2.4e-07 30.2 98.9 13 18 0.01 11 5.7 0.9 2 15 470 483 469 489 0.85 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF433-203 - 638 2.4e-07 30.2 98.9 14 18 0.0089 10 5.8 0.2 3 18 499 515 497 517 0.80 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF433-203 - 638 2.4e-07 30.2 98.9 15 18 0.028 32 4.2 0.1 3 13 527 537 525 545 0.80 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF433-203 - 638 2.4e-07 30.2 98.9 16 18 0.016 18 5.0 0.6 3 15 555 567 553 573 0.80 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF433-203 - 638 2.4e-07 30.2 98.9 17 18 0.046 52 3.6 0.7 3 12 583 592 581 598 0.87 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF433-203 - 638 2.4e-07 30.2 98.9 18 18 0.012 13 5.5 0.6 3 19 611 628 609 629 0.82 Ubiquitin-Binding Zinc Finger # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF433-203.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF433-203.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF433-203.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF433-203.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF433-203.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:06:25 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF433-204.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF433-204.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF433-204.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF433-204.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF433-204.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:06:25 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF433-205.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF433-205.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF433-205.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF433-205.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF433-205.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:06:26 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF433-206.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF433-206.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF433-206.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF433-206.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF433-206.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:06:26 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF433-207.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF433-207.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF433-207.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF433-207.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF433-207.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:06:26 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF433-208.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF433-208.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF433-208.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF433-208.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF433-208.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:06:27 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF433-209.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF433-209.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF433-209.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF433-209.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF433-209.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:06:27 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF433-210.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF433-210.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF433-210.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF433-210.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF433-210.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:06:27 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZNF436-201 - 470 1.5e-93 303.4 87.1 1 13 0.00026 0.21 12.1 0.6 4 25 127 148 124 149 0.89 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF436-201 - 470 1.5e-93 303.4 87.1 2 13 4.1e-11 3.3e-08 33.6 1.0 1 25 152 176 152 177 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF436-201 - 470 1.5e-93 303.4 87.1 3 13 5.6e-10 4.5e-07 30.0 0.6 1 25 180 204 180 205 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF436-201 - 470 1.5e-93 303.4 87.1 4 13 1.2e-08 9.6e-06 25.8 2.3 1 24 208 231 208 231 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF436-201 - 470 1.5e-93 303.4 87.1 5 13 4.4e-11 3.6e-08 33.5 1.1 1 25 236 260 236 261 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF436-201 - 470 1.5e-93 303.4 87.1 6 13 2.2e-10 1.8e-07 31.3 0.7 1 25 264 288 264 289 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF436-201 - 470 1.5e-93 303.4 87.1 7 13 2.4e-11 1.9e-08 34.3 0.5 2 25 293 316 292 317 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF436-201 - 470 1.5e-93 303.4 87.1 8 13 1.4e-09 1.2e-06 28.7 1.0 1 25 320 344 320 345 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF436-201 - 470 1.5e-93 303.4 87.1 9 13 3.1e-12 2.5e-09 37.1 1.2 1 25 348 372 348 373 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF436-201 - 470 1.5e-93 303.4 87.1 10 13 4e-08 3.2e-05 24.1 0.7 2 22 377 397 376 400 0.86 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF436-201 - 470 1.5e-93 303.4 87.1 11 13 3.3e-11 2.7e-08 33.9 0.2 2 25 405 428 404 429 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF436-201 - 470 1.5e-93 303.4 87.1 12 13 1.4e-11 1.1e-08 35.0 0.6 1 25 432 456 432 457 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF436-201 - 470 1.5e-93 303.4 87.1 13 13 0.3 2.4e+02 2.4 0.2 1 10 460 469 460 470 0.89 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZNF436-201 - 470 4.3e-77 250.5 99.6 1 12 7.6e-08 6.2e-05 23.2 3.2 1 23 138 160 138 160 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF436-201 - 470 4.3e-77 250.5 99.6 2 12 3.4e-09 2.8e-06 27.5 3.0 1 23 166 188 166 188 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF436-201 - 470 4.3e-77 250.5 99.6 3 12 3e-08 2.5e-05 24.5 1.0 1 23 194 216 194 216 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF436-201 - 470 4.3e-77 250.5 99.6 4 12 3.3e-08 2.7e-05 24.4 7.4 1 23 222 244 222 244 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF436-201 - 470 4.3e-77 250.5 99.6 5 12 1.8e-10 1.4e-07 31.5 1.9 1 23 250 272 250 272 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF436-201 - 470 4.3e-77 250.5 99.6 6 12 3.5e-08 2.9e-05 24.3 0.3 1 23 278 300 278 300 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF436-201 - 470 4.3e-77 250.5 99.6 7 12 2.8e-09 2.3e-06 27.8 0.7 1 23 306 328 306 328 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF436-201 - 470 4.3e-77 250.5 99.6 8 12 9.8e-08 8e-05 22.9 3.3 1 23 334 356 334 356 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF436-201 - 470 4.3e-77 250.5 99.6 9 12 4.8e-09 3.9e-06 27.0 1.6 1 23 362 384 362 384 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF436-201 - 470 4.3e-77 250.5 99.6 10 12 7.8e-08 6.3e-05 23.2 0.4 1 23 390 412 390 412 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF436-201 - 470 4.3e-77 250.5 99.6 11 12 5.7e-09 4.7e-06 26.8 0.3 1 23 418 440 418 440 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF436-201 - 470 4.3e-77 250.5 99.6 12 12 7.5e-09 6.1e-06 26.4 0.8 1 23 446 468 446 468 0.98 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZNF436-201 - 470 4.2e-44 145.4 93.6 1 12 8.4e-07 0.00069 20.3 2.3 1 23 138 160 138 161 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF436-201 - 470 4.2e-44 145.4 93.6 2 12 3.5e-06 0.0028 18.3 2.2 1 23 166 188 166 189 0.97 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF436-201 - 470 4.2e-44 145.4 93.6 3 12 0.00026 0.21 12.5 0.7 3 23 196 216 194 217 0.90 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF436-201 - 470 4.2e-44 145.4 93.6 4 12 6.5e-05 0.053 14.4 6.5 1 23 222 244 222 245 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF436-201 - 470 4.2e-44 145.4 93.6 5 12 7.8e-07 0.00063 20.4 1.9 1 23 250 272 250 273 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF436-201 - 470 4.2e-44 145.4 93.6 6 12 7.8e-06 0.0064 17.2 0.2 1 23 278 300 278 301 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF436-201 - 470 4.2e-44 145.4 93.6 7 12 3.9e-07 0.00032 21.3 0.4 1 23 306 328 306 329 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF436-201 - 470 4.2e-44 145.4 93.6 8 12 2.2e-05 0.018 15.9 2.4 1 23 334 356 334 357 0.97 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF436-201 - 470 4.2e-44 145.4 93.6 9 12 6.4e-06 0.0052 17.5 1.3 1 23 362 384 362 385 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF436-201 - 470 4.2e-44 145.4 93.6 10 12 0.0015 1.3 10.1 0.4 1 23 390 412 390 413 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF436-201 - 470 4.2e-44 145.4 93.6 11 12 1.8e-05 0.015 16.1 0.3 1 23 418 440 418 441 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF436-201 - 470 4.2e-44 145.4 93.6 12 12 2.6e-06 0.0021 18.7 1.0 1 23 446 468 446 469 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF436-201 - 470 9e-24 83.0 97.1 1 12 2.4e-05 0.019 14.9 3.0 1 24 137 160 137 162 0.97 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF436-201 - 470 9e-24 83.0 97.1 2 12 0.007 5.7 7.1 3.5 2 24 166 188 166 191 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF436-201 - 470 9e-24 83.0 97.1 3 12 0.0011 0.9 9.6 0.5 2 13 194 205 194 216 0.81 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF436-201 - 470 9e-24 83.0 97.1 4 12 0.00023 0.19 11.8 6.9 2 25 222 245 222 247 0.95 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF436-201 - 470 9e-24 83.0 97.1 5 12 0.00048 0.39 10.8 2.7 2 24 250 272 250 275 0.86 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF436-201 - 470 9e-24 83.0 97.1 6 12 0.0017 1.4 9.0 0.3 2 20 278 296 278 302 0.83 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF436-201 - 470 9e-24 83.0 97.1 7 12 7.9e-05 0.064 13.3 0.4 2 24 306 328 306 331 0.92 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF436-201 - 470 9e-24 83.0 97.1 8 12 0.0054 4.4 7.4 2.4 2 24 334 356 334 359 0.92 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF436-201 - 470 9e-24 83.0 97.1 9 12 0.00029 0.23 11.5 1.6 2 24 362 384 362 387 0.90 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF436-201 - 470 9e-24 83.0 97.1 10 12 0.0003 0.24 11.4 0.3 2 24 390 412 390 415 0.95 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF436-201 - 470 9e-24 83.0 97.1 11 12 0.0016 1.3 9.1 0.5 2 24 418 440 418 443 0.91 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF436-201 - 470 9e-24 83.0 97.1 12 12 5.7e-08 4.6e-05 23.3 0.8 2 24 446 468 446 470 0.95 C2H2-type zinc finger KRAB PF01352.27 42 ZNF436-201 - 470 1.1e-22 79.3 1.3 1 2 2.1e-25 1.7e-22 78.7 0.2 1 42 13 54 13 54 0.98 KRAB box KRAB PF01352.27 42 ZNF436-201 - 470 1.1e-22 79.3 1.3 2 2 4.3 3.5e+03 -2.2 0.1 10 16 108 114 108 116 0.82 KRAB box zf-C2H2_jaz PF12171.8 27 ZNF436-201 - 470 1e-19 70.3 60.5 1 12 0.0054 4.4 7.7 2.8 2 24 138 160 137 160 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF436-201 - 470 1e-19 70.3 60.5 2 12 0.00011 0.089 13.1 0.6 2 24 166 188 165 188 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF436-201 - 470 1e-19 70.3 60.5 3 12 0.011 8.8 6.8 0.1 2 21 194 213 193 214 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF436-201 - 470 1e-19 70.3 60.5 4 12 0.64 5.2e+02 1.1 2.9 2 24 222 244 221 245 0.88 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF436-201 - 470 1e-19 70.3 60.5 5 12 2.7e-05 0.022 15.0 0.6 2 24 250 272 249 272 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF436-201 - 470 1e-19 70.3 60.5 6 12 0.0023 1.9 8.9 0.0 2 22 278 298 277 298 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF436-201 - 470 1e-19 70.3 60.5 7 12 0.0019 1.6 9.1 0.1 2 21 306 325 305 326 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF436-201 - 470 1e-19 70.3 60.5 8 12 0.064 52 4.3 0.9 4 24 336 356 333 356 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF436-201 - 470 1e-19 70.3 60.5 9 12 0.00045 0.37 11.1 0.2 2 22 362 382 361 382 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF436-201 - 470 1e-19 70.3 60.5 10 12 0.055 45 4.5 0.1 2 24 390 412 389 412 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF436-201 - 470 1e-19 70.3 60.5 11 12 0.0042 3.4 8.1 0.0 2 22 418 438 417 438 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF436-201 - 470 1e-19 70.3 60.5 12 12 2.1e-05 0.017 15.4 0.1 2 22 446 466 445 466 0.93 Zinc-finger double-stranded RNA-binding Zn-ribbon_8 PF09723.10 40 ZNF436-201 - 470 3.8e-12 46.1 63.0 1 10 0.0035 2.8 8.1 2.7 8 36 140 175 136 178 0.81 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF436-201 - 470 3.8e-12 46.1 63.0 2 10 0.00058 0.47 10.6 3.6 6 34 166 201 165 205 0.88 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF436-201 - 470 3.8e-12 46.1 63.0 3 10 0.00018 0.14 12.3 4.1 6 36 194 231 193 235 0.88 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF436-201 - 470 3.8e-12 46.1 63.0 4 10 0.00063 0.51 10.5 7.8 6 34 250 285 249 290 0.88 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF436-201 - 470 3.8e-12 46.1 63.0 5 10 0.0078 6.4 7.0 0.8 6 18 278 290 277 295 0.87 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF436-201 - 470 3.8e-12 46.1 63.0 6 10 6.9e-06 0.0056 16.8 4.0 6 39 306 346 305 347 0.86 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF436-201 - 470 3.8e-12 46.1 63.0 7 10 0.0023 1.9 8.7 0.3 6 19 334 347 333 352 0.86 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF436-201 - 470 3.8e-12 46.1 63.0 8 10 4.5e-05 0.037 14.1 1.2 6 32 362 395 361 403 0.93 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF436-201 - 470 3.8e-12 46.1 63.0 9 10 0.0013 1.1 9.5 4.9 6 38 418 457 417 458 0.89 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF436-201 - 470 3.8e-12 46.1 63.0 10 10 0.039 32 4.8 1.1 6 17 446 457 445 464 0.85 Zinc ribbon domain XPA_N PF01286.18 32 ZNF436-201 - 470 9.5e-12 44.8 45.1 1 12 0.074 60 3.8 0.1 3 12 139 148 137 149 0.85 XPA protein N-terminal XPA_N PF01286.18 32 ZNF436-201 - 470 9.5e-12 44.8 45.1 2 12 0.0092 7.5 6.7 0.1 3 14 167 178 165 183 0.89 XPA protein N-terminal XPA_N PF01286.18 32 ZNF436-201 - 470 9.5e-12 44.8 45.1 3 12 0.0052 4.3 7.5 0.1 3 14 195 206 193 211 0.89 XPA protein N-terminal XPA_N PF01286.18 32 ZNF436-201 - 470 9.5e-12 44.8 45.1 4 12 0.008 6.5 6.9 0.6 3 12 223 232 221 240 0.86 XPA protein N-terminal XPA_N PF01286.18 32 ZNF436-201 - 470 9.5e-12 44.8 45.1 5 12 0.0016 1.3 9.1 0.3 3 14 251 262 249 267 0.89 XPA protein N-terminal XPA_N PF01286.18 32 ZNF436-201 - 470 9.5e-12 44.8 45.1 6 12 0.024 20 5.3 0.0 3 20 279 297 277 300 0.74 XPA protein N-terminal XPA_N PF01286.18 32 ZNF436-201 - 470 9.5e-12 44.8 45.1 7 12 0.002 1.6 8.8 0.2 3 12 307 316 305 322 0.89 XPA protein N-terminal XPA_N PF01286.18 32 ZNF436-201 - 470 9.5e-12 44.8 45.1 8 12 0.044 36 4.5 0.1 3 12 335 344 333 352 0.86 XPA protein N-terminal XPA_N PF01286.18 32 ZNF436-201 - 470 9.5e-12 44.8 45.1 9 12 0.055 45 4.2 0.1 3 14 363 374 361 380 0.87 XPA protein N-terminal XPA_N PF01286.18 32 ZNF436-201 - 470 9.5e-12 44.8 45.1 10 12 0.79 6.5e+02 0.5 0.1 3 12 391 400 389 403 0.85 XPA protein N-terminal XPA_N PF01286.18 32 ZNF436-201 - 470 9.5e-12 44.8 45.1 11 12 0.012 10 6.3 0.0 3 14 419 430 417 435 0.92 XPA protein N-terminal XPA_N PF01286.18 32 ZNF436-201 - 470 9.5e-12 44.8 45.1 12 12 0.013 11 6.2 0.3 3 14 447 458 445 462 0.90 XPA protein N-terminal zinc_ribbon_15 PF17032.5 86 ZNF436-201 - 470 1.2e-07 32.4 45.1 1 6 0.0011 0.92 10.3 0.8 35 76 135 176 127 181 0.86 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF436-201 - 470 1.2e-07 32.4 45.1 2 6 0.0042 3.5 8.5 2.0 31 74 187 230 178 236 0.84 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF436-201 - 470 1.2e-07 32.4 45.1 3 6 0.00022 0.18 12.6 1.6 31 77 243 289 234 293 0.84 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF436-201 - 470 1.2e-07 32.4 45.1 4 6 8.2e-05 0.067 14.0 1.2 26 75 294 343 293 348 0.89 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF436-201 - 470 1.2e-07 32.4 45.1 5 6 0.0092 7.5 7.4 1.4 32 74 356 398 348 405 0.82 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF436-201 - 470 1.2e-07 32.4 45.1 6 6 0.0096 7.8 7.3 2.0 31 77 411 457 405 461 0.83 zinc-ribbon family # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF436-201.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF436-201.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF436-201.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF436-201.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF436-201.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:06:28 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZNF436-202 - 470 1.5e-93 303.4 87.1 1 13 0.00026 0.21 12.1 0.6 4 25 127 148 124 149 0.89 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF436-202 - 470 1.5e-93 303.4 87.1 2 13 4.1e-11 3.3e-08 33.6 1.0 1 25 152 176 152 177 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF436-202 - 470 1.5e-93 303.4 87.1 3 13 5.6e-10 4.5e-07 30.0 0.6 1 25 180 204 180 205 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF436-202 - 470 1.5e-93 303.4 87.1 4 13 1.2e-08 9.6e-06 25.8 2.3 1 24 208 231 208 231 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF436-202 - 470 1.5e-93 303.4 87.1 5 13 4.4e-11 3.6e-08 33.5 1.1 1 25 236 260 236 261 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF436-202 - 470 1.5e-93 303.4 87.1 6 13 2.2e-10 1.8e-07 31.3 0.7 1 25 264 288 264 289 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF436-202 - 470 1.5e-93 303.4 87.1 7 13 2.4e-11 1.9e-08 34.3 0.5 2 25 293 316 292 317 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF436-202 - 470 1.5e-93 303.4 87.1 8 13 1.4e-09 1.2e-06 28.7 1.0 1 25 320 344 320 345 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF436-202 - 470 1.5e-93 303.4 87.1 9 13 3.1e-12 2.5e-09 37.1 1.2 1 25 348 372 348 373 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF436-202 - 470 1.5e-93 303.4 87.1 10 13 4e-08 3.2e-05 24.1 0.7 2 22 377 397 376 400 0.86 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF436-202 - 470 1.5e-93 303.4 87.1 11 13 3.3e-11 2.7e-08 33.9 0.2 2 25 405 428 404 429 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF436-202 - 470 1.5e-93 303.4 87.1 12 13 1.4e-11 1.1e-08 35.0 0.6 1 25 432 456 432 457 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF436-202 - 470 1.5e-93 303.4 87.1 13 13 0.3 2.4e+02 2.4 0.2 1 10 460 469 460 470 0.89 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZNF436-202 - 470 4.3e-77 250.5 99.6 1 12 7.6e-08 6.2e-05 23.2 3.2 1 23 138 160 138 160 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF436-202 - 470 4.3e-77 250.5 99.6 2 12 3.4e-09 2.8e-06 27.5 3.0 1 23 166 188 166 188 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF436-202 - 470 4.3e-77 250.5 99.6 3 12 3e-08 2.5e-05 24.5 1.0 1 23 194 216 194 216 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF436-202 - 470 4.3e-77 250.5 99.6 4 12 3.3e-08 2.7e-05 24.4 7.4 1 23 222 244 222 244 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF436-202 - 470 4.3e-77 250.5 99.6 5 12 1.8e-10 1.4e-07 31.5 1.9 1 23 250 272 250 272 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF436-202 - 470 4.3e-77 250.5 99.6 6 12 3.5e-08 2.9e-05 24.3 0.3 1 23 278 300 278 300 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF436-202 - 470 4.3e-77 250.5 99.6 7 12 2.8e-09 2.3e-06 27.8 0.7 1 23 306 328 306 328 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF436-202 - 470 4.3e-77 250.5 99.6 8 12 9.8e-08 8e-05 22.9 3.3 1 23 334 356 334 356 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF436-202 - 470 4.3e-77 250.5 99.6 9 12 4.8e-09 3.9e-06 27.0 1.6 1 23 362 384 362 384 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF436-202 - 470 4.3e-77 250.5 99.6 10 12 7.8e-08 6.3e-05 23.2 0.4 1 23 390 412 390 412 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF436-202 - 470 4.3e-77 250.5 99.6 11 12 5.7e-09 4.7e-06 26.8 0.3 1 23 418 440 418 440 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF436-202 - 470 4.3e-77 250.5 99.6 12 12 7.5e-09 6.1e-06 26.4 0.8 1 23 446 468 446 468 0.98 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZNF436-202 - 470 4.2e-44 145.4 93.6 1 12 8.4e-07 0.00069 20.3 2.3 1 23 138 160 138 161 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF436-202 - 470 4.2e-44 145.4 93.6 2 12 3.5e-06 0.0028 18.3 2.2 1 23 166 188 166 189 0.97 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF436-202 - 470 4.2e-44 145.4 93.6 3 12 0.00026 0.21 12.5 0.7 3 23 196 216 194 217 0.90 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF436-202 - 470 4.2e-44 145.4 93.6 4 12 6.5e-05 0.053 14.4 6.5 1 23 222 244 222 245 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF436-202 - 470 4.2e-44 145.4 93.6 5 12 7.8e-07 0.00063 20.4 1.9 1 23 250 272 250 273 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF436-202 - 470 4.2e-44 145.4 93.6 6 12 7.8e-06 0.0064 17.2 0.2 1 23 278 300 278 301 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF436-202 - 470 4.2e-44 145.4 93.6 7 12 3.9e-07 0.00032 21.3 0.4 1 23 306 328 306 329 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF436-202 - 470 4.2e-44 145.4 93.6 8 12 2.2e-05 0.018 15.9 2.4 1 23 334 356 334 357 0.97 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF436-202 - 470 4.2e-44 145.4 93.6 9 12 6.4e-06 0.0052 17.5 1.3 1 23 362 384 362 385 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF436-202 - 470 4.2e-44 145.4 93.6 10 12 0.0015 1.3 10.1 0.4 1 23 390 412 390 413 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF436-202 - 470 4.2e-44 145.4 93.6 11 12 1.8e-05 0.015 16.1 0.3 1 23 418 440 418 441 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF436-202 - 470 4.2e-44 145.4 93.6 12 12 2.6e-06 0.0021 18.7 1.0 1 23 446 468 446 469 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF436-202 - 470 9e-24 83.0 97.1 1 12 2.4e-05 0.019 14.9 3.0 1 24 137 160 137 162 0.97 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF436-202 - 470 9e-24 83.0 97.1 2 12 0.007 5.7 7.1 3.5 2 24 166 188 166 191 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF436-202 - 470 9e-24 83.0 97.1 3 12 0.0011 0.9 9.6 0.5 2 13 194 205 194 216 0.81 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF436-202 - 470 9e-24 83.0 97.1 4 12 0.00023 0.19 11.8 6.9 2 25 222 245 222 247 0.95 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF436-202 - 470 9e-24 83.0 97.1 5 12 0.00048 0.39 10.8 2.7 2 24 250 272 250 275 0.86 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF436-202 - 470 9e-24 83.0 97.1 6 12 0.0017 1.4 9.0 0.3 2 20 278 296 278 302 0.83 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF436-202 - 470 9e-24 83.0 97.1 7 12 7.9e-05 0.064 13.3 0.4 2 24 306 328 306 331 0.92 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF436-202 - 470 9e-24 83.0 97.1 8 12 0.0054 4.4 7.4 2.4 2 24 334 356 334 359 0.92 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF436-202 - 470 9e-24 83.0 97.1 9 12 0.00029 0.23 11.5 1.6 2 24 362 384 362 387 0.90 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF436-202 - 470 9e-24 83.0 97.1 10 12 0.0003 0.24 11.4 0.3 2 24 390 412 390 415 0.95 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF436-202 - 470 9e-24 83.0 97.1 11 12 0.0016 1.3 9.1 0.5 2 24 418 440 418 443 0.91 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF436-202 - 470 9e-24 83.0 97.1 12 12 5.7e-08 4.6e-05 23.3 0.8 2 24 446 468 446 470 0.95 C2H2-type zinc finger KRAB PF01352.27 42 ZNF436-202 - 470 1.1e-22 79.3 1.3 1 2 2.1e-25 1.7e-22 78.7 0.2 1 42 13 54 13 54 0.98 KRAB box KRAB PF01352.27 42 ZNF436-202 - 470 1.1e-22 79.3 1.3 2 2 4.3 3.5e+03 -2.2 0.1 10 16 108 114 108 116 0.82 KRAB box zf-C2H2_jaz PF12171.8 27 ZNF436-202 - 470 1e-19 70.3 60.5 1 12 0.0054 4.4 7.7 2.8 2 24 138 160 137 160 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF436-202 - 470 1e-19 70.3 60.5 2 12 0.00011 0.089 13.1 0.6 2 24 166 188 165 188 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF436-202 - 470 1e-19 70.3 60.5 3 12 0.011 8.8 6.8 0.1 2 21 194 213 193 214 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF436-202 - 470 1e-19 70.3 60.5 4 12 0.64 5.2e+02 1.1 2.9 2 24 222 244 221 245 0.88 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF436-202 - 470 1e-19 70.3 60.5 5 12 2.7e-05 0.022 15.0 0.6 2 24 250 272 249 272 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF436-202 - 470 1e-19 70.3 60.5 6 12 0.0023 1.9 8.9 0.0 2 22 278 298 277 298 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF436-202 - 470 1e-19 70.3 60.5 7 12 0.0019 1.6 9.1 0.1 2 21 306 325 305 326 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF436-202 - 470 1e-19 70.3 60.5 8 12 0.064 52 4.3 0.9 4 24 336 356 333 356 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF436-202 - 470 1e-19 70.3 60.5 9 12 0.00045 0.37 11.1 0.2 2 22 362 382 361 382 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF436-202 - 470 1e-19 70.3 60.5 10 12 0.055 45 4.5 0.1 2 24 390 412 389 412 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF436-202 - 470 1e-19 70.3 60.5 11 12 0.0042 3.4 8.1 0.0 2 22 418 438 417 438 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF436-202 - 470 1e-19 70.3 60.5 12 12 2.1e-05 0.017 15.4 0.1 2 22 446 466 445 466 0.93 Zinc-finger double-stranded RNA-binding Zn-ribbon_8 PF09723.10 40 ZNF436-202 - 470 3.8e-12 46.1 63.0 1 10 0.0035 2.8 8.1 2.7 8 36 140 175 136 178 0.81 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF436-202 - 470 3.8e-12 46.1 63.0 2 10 0.00058 0.47 10.6 3.6 6 34 166 201 165 205 0.88 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF436-202 - 470 3.8e-12 46.1 63.0 3 10 0.00018 0.14 12.3 4.1 6 36 194 231 193 235 0.88 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF436-202 - 470 3.8e-12 46.1 63.0 4 10 0.00063 0.51 10.5 7.8 6 34 250 285 249 290 0.88 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF436-202 - 470 3.8e-12 46.1 63.0 5 10 0.0078 6.4 7.0 0.8 6 18 278 290 277 295 0.87 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF436-202 - 470 3.8e-12 46.1 63.0 6 10 6.9e-06 0.0056 16.8 4.0 6 39 306 346 305 347 0.86 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF436-202 - 470 3.8e-12 46.1 63.0 7 10 0.0023 1.9 8.7 0.3 6 19 334 347 333 352 0.86 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF436-202 - 470 3.8e-12 46.1 63.0 8 10 4.5e-05 0.037 14.1 1.2 6 32 362 395 361 403 0.93 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF436-202 - 470 3.8e-12 46.1 63.0 9 10 0.0013 1.1 9.5 4.9 6 38 418 457 417 458 0.89 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF436-202 - 470 3.8e-12 46.1 63.0 10 10 0.039 32 4.8 1.1 6 17 446 457 445 464 0.85 Zinc ribbon domain XPA_N PF01286.18 32 ZNF436-202 - 470 9.5e-12 44.8 45.1 1 12 0.074 60 3.8 0.1 3 12 139 148 137 149 0.85 XPA protein N-terminal XPA_N PF01286.18 32 ZNF436-202 - 470 9.5e-12 44.8 45.1 2 12 0.0092 7.5 6.7 0.1 3 14 167 178 165 183 0.89 XPA protein N-terminal XPA_N PF01286.18 32 ZNF436-202 - 470 9.5e-12 44.8 45.1 3 12 0.0052 4.3 7.5 0.1 3 14 195 206 193 211 0.89 XPA protein N-terminal XPA_N PF01286.18 32 ZNF436-202 - 470 9.5e-12 44.8 45.1 4 12 0.008 6.5 6.9 0.6 3 12 223 232 221 240 0.86 XPA protein N-terminal XPA_N PF01286.18 32 ZNF436-202 - 470 9.5e-12 44.8 45.1 5 12 0.0016 1.3 9.1 0.3 3 14 251 262 249 267 0.89 XPA protein N-terminal XPA_N PF01286.18 32 ZNF436-202 - 470 9.5e-12 44.8 45.1 6 12 0.024 20 5.3 0.0 3 20 279 297 277 300 0.74 XPA protein N-terminal XPA_N PF01286.18 32 ZNF436-202 - 470 9.5e-12 44.8 45.1 7 12 0.002 1.6 8.8 0.2 3 12 307 316 305 322 0.89 XPA protein N-terminal XPA_N PF01286.18 32 ZNF436-202 - 470 9.5e-12 44.8 45.1 8 12 0.044 36 4.5 0.1 3 12 335 344 333 352 0.86 XPA protein N-terminal XPA_N PF01286.18 32 ZNF436-202 - 470 9.5e-12 44.8 45.1 9 12 0.055 45 4.2 0.1 3 14 363 374 361 380 0.87 XPA protein N-terminal XPA_N PF01286.18 32 ZNF436-202 - 470 9.5e-12 44.8 45.1 10 12 0.79 6.5e+02 0.5 0.1 3 12 391 400 389 403 0.85 XPA protein N-terminal XPA_N PF01286.18 32 ZNF436-202 - 470 9.5e-12 44.8 45.1 11 12 0.012 10 6.3 0.0 3 14 419 430 417 435 0.92 XPA protein N-terminal XPA_N PF01286.18 32 ZNF436-202 - 470 9.5e-12 44.8 45.1 12 12 0.013 11 6.2 0.3 3 14 447 458 445 462 0.90 XPA protein N-terminal zinc_ribbon_15 PF17032.5 86 ZNF436-202 - 470 1.2e-07 32.4 45.1 1 6 0.0011 0.92 10.3 0.8 35 76 135 176 127 181 0.86 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF436-202 - 470 1.2e-07 32.4 45.1 2 6 0.0042 3.5 8.5 2.0 31 74 187 230 178 236 0.84 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF436-202 - 470 1.2e-07 32.4 45.1 3 6 0.00022 0.18 12.6 1.6 31 77 243 289 234 293 0.84 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF436-202 - 470 1.2e-07 32.4 45.1 4 6 8.2e-05 0.067 14.0 1.2 26 75 294 343 293 348 0.89 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF436-202 - 470 1.2e-07 32.4 45.1 5 6 0.0092 7.5 7.4 1.4 32 74 356 398 348 405 0.82 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF436-202 - 470 1.2e-07 32.4 45.1 6 6 0.0096 7.8 7.3 2.0 31 77 411 457 405 461 0.83 zinc-ribbon family # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF436-202.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF436-202.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF436-202.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF436-202.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF436-202.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:06:28 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZNF439-201 - 499 7.7e-79 256.9 96.4 1 11 1.4e-07 0.00015 22.0 0.7 2 22 167 193 166 195 0.84 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF439-201 - 499 7.7e-79 256.9 96.4 2 11 1.1e-08 1.1e-05 25.6 2.4 3 24 202 223 200 225 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF439-201 - 499 7.7e-79 256.9 96.4 3 11 8.6e-11 9e-08 32.2 1.4 5 25 232 252 230 253 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF439-201 - 499 7.7e-79 256.9 96.4 4 11 3e-09 3.2e-06 27.3 1.5 5 25 260 280 258 281 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF439-201 - 499 7.7e-79 256.9 96.4 5 11 1.9e-08 2e-05 24.8 2.8 4 24 287 307 286 307 0.98 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF439-201 - 499 7.7e-79 256.9 96.4 6 11 1.9e-07 0.0002 21.6 1.7 3 23 314 334 312 337 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF439-201 - 499 7.7e-79 256.9 96.4 7 11 1.3e-09 1.4e-06 28.5 0.8 2 24 341 363 340 365 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF439-201 - 499 7.7e-79 256.9 96.4 8 11 5.9e-11 6.2e-08 32.7 3.1 2 26 369 393 368 393 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF439-201 - 499 7.7e-79 256.9 96.4 9 11 3.7e-12 3.9e-09 36.5 2.4 2 25 397 420 396 421 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF439-201 - 499 7.7e-79 256.9 96.4 10 11 8.7e-11 9.2e-08 32.2 0.5 1 25 424 448 424 449 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF439-201 - 499 7.7e-79 256.9 96.4 11 11 1.5e-11 1.6e-08 34.6 1.4 2 25 453 476 452 477 0.93 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZNF439-201 - 499 1.6e-35 119.6 101.1 1 12 2 2.1e+03 -0.5 0.1 5 11 94 100 93 101 0.87 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF439-201 - 499 1.6e-35 119.6 101.1 2 12 0.00015 0.16 12.5 0.5 1 23 186 208 186 208 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF439-201 - 499 1.6e-35 119.6 101.1 3 12 0.005 5.3 7.7 5.3 1 23 214 236 214 236 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF439-201 - 499 1.6e-35 119.6 101.1 4 12 5e-05 0.052 14.0 2.9 1 23 242 264 242 264 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF439-201 - 499 1.6e-35 119.6 101.1 5 12 0.0031 3.2 8.4 6.3 1 23 270 292 270 292 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF439-201 - 499 1.6e-35 119.6 101.1 6 12 0.00022 0.24 12.0 3.2 1 23 298 320 298 320 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF439-201 - 499 1.6e-35 119.6 101.1 7 12 1.2e-06 0.0012 19.1 0.7 1 23 326 348 326 348 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF439-201 - 499 1.6e-35 119.6 101.1 8 12 1e-06 0.0011 19.3 1.7 1 23 354 376 354 376 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF439-201 - 499 1.6e-35 119.6 101.1 9 12 8.4e-08 8.9e-05 22.7 2.6 1 23 382 404 382 404 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF439-201 - 499 1.6e-35 119.6 101.1 10 12 8e-08 8.5e-05 22.8 0.2 1 23 410 432 410 432 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF439-201 - 499 1.6e-35 119.6 101.1 11 12 2.3e-09 2.4e-06 27.7 0.5 1 23 438 460 438 460 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF439-201 - 499 1.6e-35 119.6 101.1 12 12 0.00053 0.56 10.8 2.2 1 23 466 490 466 490 0.87 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZNF439-201 - 499 2e-33 112.2 92.4 1 12 2.1 2.2e+03 -0.0 0.0 4 12 93 100 93 104 0.83 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF439-201 - 499 2e-33 112.2 92.4 2 12 0.002 2.1 9.4 0.5 1 23 186 208 186 209 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF439-201 - 499 2e-33 112.2 92.4 3 12 0.00012 0.13 13.2 4.7 1 23 214 236 214 237 0.97 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF439-201 - 499 2e-33 112.2 92.4 4 12 1.5e-05 0.016 16.0 1.6 1 23 242 264 242 265 0.90 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF439-201 - 499 2e-33 112.2 92.4 5 12 0.00022 0.23 12.4 5.7 1 23 270 292 270 293 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF439-201 - 499 2e-33 112.2 92.4 6 12 4.5e-06 0.0047 17.6 2.7 1 23 298 320 298 321 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF439-201 - 499 2e-33 112.2 92.4 7 12 3.2e-06 0.0034 18.1 0.7 1 23 326 348 326 349 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF439-201 - 499 2e-33 112.2 92.4 8 12 5.3e-06 0.0056 17.4 1.5 1 23 354 376 354 377 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF439-201 - 499 2e-33 112.2 92.4 9 12 1.4e-06 0.0014 19.2 1.7 1 23 382 404 382 405 0.97 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF439-201 - 499 2e-33 112.2 92.4 10 12 0.00031 0.33 11.9 0.3 1 19 410 428 410 433 0.87 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF439-201 - 499 2e-33 112.2 92.4 11 12 2.4e-06 0.0025 18.5 0.5 1 23 438 460 438 461 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF439-201 - 499 2e-33 112.2 92.4 12 12 0.00021 0.23 12.4 0.8 1 22 466 487 466 489 0.93 C2H2-type zinc finger KRAB PF01352.27 42 ZNF439-201 - 499 5.9e-23 80.3 0.1 1 1 9.6e-26 1e-22 79.5 0.1 1 42 18 59 18 59 0.98 KRAB box zf-C2H2_6 PF13912.6 27 ZNF439-201 - 499 3.8e-15 55.5 94.9 1 12 6.6 7e+03 -2.8 0.1 19 23 144 148 143 148 0.85 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF439-201 - 499 3.8e-15 55.5 94.9 2 12 0.12 1.2e+02 2.8 0.9 2 9 186 193 186 194 0.91 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF439-201 - 499 3.8e-15 55.5 94.9 3 12 0.21 2.2e+02 2.0 4.5 2 12 214 224 214 226 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF439-201 - 499 3.8e-15 55.5 94.9 4 12 0.00019 0.2 11.7 2.2 2 13 242 253 242 253 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF439-201 - 499 3.8e-15 55.5 94.9 5 12 0.0016 1.7 8.8 5.4 2 13 270 281 270 295 0.77 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF439-201 - 499 3.8e-15 55.5 94.9 6 12 0.0014 1.5 8.9 0.1 1 11 297 307 297 308 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF439-201 - 499 3.8e-15 55.5 94.9 7 12 2.4e-05 0.025 14.6 0.7 2 24 326 348 325 351 0.86 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF439-201 - 499 3.8e-15 55.5 94.9 8 12 0.00061 0.64 10.1 3.7 2 25 354 377 354 379 0.92 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF439-201 - 499 3.8e-15 55.5 94.9 9 12 0.0013 1.4 9.0 1.6 2 13 382 393 382 406 0.78 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF439-201 - 499 3.8e-15 55.5 94.9 10 12 1.7e-05 0.018 15.0 0.4 2 24 410 432 410 435 0.88 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF439-201 - 499 3.8e-15 55.5 94.9 11 12 1.3e-05 0.014 15.4 0.4 2 24 438 460 438 463 0.91 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF439-201 - 499 3.8e-15 55.5 94.9 12 12 0.00014 0.15 12.1 2.1 2 20 466 484 466 491 0.86 C2H2-type zinc finger zf-C2H2_jaz PF12171.8 27 ZNF439-201 - 499 1.7e-12 47.3 64.8 1 11 0.054 57 4.2 0.2 2 21 186 205 185 206 0.89 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF439-201 - 499 1.7e-12 47.3 64.8 2 11 0.29 3e+02 1.9 2.4 2 21 214 233 213 236 0.73 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF439-201 - 499 1.7e-12 47.3 64.8 3 11 0.0056 5.9 7.3 0.7 2 24 242 264 241 265 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF439-201 - 499 1.7e-12 47.3 64.8 4 11 0.0002 0.21 11.9 1.7 2 24 270 292 269 292 0.95 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF439-201 - 499 1.7e-12 47.3 64.8 5 11 1.2 1.3e+03 -0.2 0.7 4 11 300 307 298 321 0.76 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF439-201 - 499 1.7e-12 47.3 64.8 6 11 0.0027 2.9 8.3 0.1 2 22 326 346 325 346 0.95 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF439-201 - 499 1.7e-12 47.3 64.8 7 11 1.9e-07 0.0002 21.6 1.2 2 24 354 376 353 377 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF439-201 - 499 1.7e-12 47.3 64.8 8 11 0.00093 0.98 9.8 0.4 2 24 382 404 381 404 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF439-201 - 499 1.7e-12 47.3 64.8 9 11 0.014 14 6.1 0.0 2 20 410 428 409 432 0.88 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF439-201 - 499 1.7e-12 47.3 64.8 10 11 0.00027 0.29 11.5 0.0 4 21 440 457 437 458 0.90 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF439-201 - 499 1.7e-12 47.3 64.8 11 11 0.066 70 3.9 2.1 2 27 466 491 465 491 0.94 Zinc-finger double-stranded RNA-binding Zn-ribbon_8 PF09723.10 40 ZNF439-201 - 499 5.4e-08 32.8 74.5 1 12 0.7 7.3e+02 0.4 0.1 10 29 94 121 93 123 0.74 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF439-201 - 499 5.4e-08 32.8 74.5 2 12 0.05 53 4.0 0.1 6 13 186 193 175 202 0.77 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF439-201 - 499 5.4e-08 32.8 74.5 3 12 0.003 3.2 8.0 7.5 6 34 214 249 213 253 0.82 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF439-201 - 499 5.4e-08 32.8 74.5 4 12 0.00059 0.62 10.2 6.8 6 34 242 277 241 279 0.76 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF439-201 - 499 5.4e-08 32.8 74.5 5 12 0.0046 4.8 7.4 9.3 6 34 270 305 269 307 0.74 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF439-201 - 499 5.4e-08 32.8 74.5 6 12 0.0011 1.1 9.4 6.2 6 36 298 335 296 338 0.76 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF439-201 - 499 5.4e-08 32.8 74.5 7 12 0.0027 2.8 8.1 3.8 6 34 326 361 325 361 0.77 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF439-201 - 499 5.4e-08 32.8 74.5 8 12 0.00042 0.44 10.7 5.9 6 38 354 393 353 394 0.73 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF439-201 - 499 5.4e-08 32.8 74.5 9 12 0.00012 0.13 12.5 5.3 6 36 382 419 381 422 0.73 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF439-201 - 499 5.4e-08 32.8 74.5 10 12 0.0001 0.11 12.7 4.4 6 36 410 447 409 449 0.87 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF439-201 - 499 5.4e-08 32.8 74.5 11 12 3.8e-05 0.04 14.0 4.5 6 36 438 475 437 479 0.86 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF439-201 - 499 5.4e-08 32.8 74.5 12 12 0.0011 1.2 9.3 0.8 6 22 466 482 464 491 0.81 Zinc ribbon domain # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF439-201.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF439-201.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF439-201.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF439-201.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF439-201.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:06:29 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF439-202.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF439-202.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF439-202.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF439-202.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF439-202.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:06:29 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZNF439-203 - 363 1.4e-80 262.4 96.4 1 11 1.2e-07 0.0001 22.6 0.7 2 22 31 57 30 59 0.84 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF439-203 - 363 1.4e-80 262.4 96.4 2 11 8.9e-09 7.6e-06 26.1 2.4 3 24 66 87 64 89 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF439-203 - 363 1.4e-80 262.4 96.4 3 11 7.2e-11 6.1e-08 32.7 1.4 5 25 96 116 94 117 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF439-203 - 363 1.4e-80 262.4 96.4 4 11 2.5e-09 2.2e-06 27.8 1.5 5 25 124 144 122 145 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF439-203 - 363 1.4e-80 262.4 96.4 5 11 1.6e-08 1.4e-05 25.3 2.8 4 24 151 171 150 171 0.98 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF439-203 - 363 1.4e-80 262.4 96.4 6 11 1.6e-07 0.00014 22.2 1.7 3 23 178 198 176 201 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF439-203 - 363 1.4e-80 262.4 96.4 7 11 1.1e-09 9.1e-07 29.0 0.8 2 24 205 227 204 229 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF439-203 - 363 1.4e-80 262.4 96.4 8 11 4.9e-11 4.2e-08 33.3 3.1 2 26 233 257 232 257 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF439-203 - 363 1.4e-80 262.4 96.4 9 11 3.1e-12 2.7e-09 37.0 2.4 2 25 261 284 260 285 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF439-203 - 363 1.4e-80 262.4 96.4 10 11 7.2e-11 6.2e-08 32.7 0.5 1 25 288 312 288 313 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF439-203 - 363 1.4e-80 262.4 96.4 11 11 1.3e-11 1.1e-08 35.1 1.4 2 25 317 340 316 341 0.93 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZNF439-203 - 363 6e-38 127.2 97.2 1 11 0.00012 0.11 13.1 0.5 1 23 50 72 50 72 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF439-203 - 363 6e-38 127.2 97.2 2 11 0.0042 3.6 8.2 5.3 1 23 78 100 78 100 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF439-203 - 363 6e-38 127.2 97.2 3 11 4.1e-05 0.035 14.5 2.9 1 23 106 128 106 128 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF439-203 - 363 6e-38 127.2 97.2 4 11 0.0026 2.2 8.9 6.4 1 23 134 156 134 156 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF439-203 - 363 6e-38 127.2 97.2 5 11 0.00019 0.16 12.5 3.2 1 23 162 184 162 184 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF439-203 - 363 6e-38 127.2 97.2 6 11 9.8e-07 0.00084 19.7 0.7 1 23 190 212 190 212 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF439-203 - 363 6e-38 127.2 97.2 7 11 8.4e-07 0.00072 19.9 1.7 1 23 218 240 218 240 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF439-203 - 363 6e-38 127.2 97.2 8 11 7.1e-08 6e-05 23.3 2.6 1 23 246 268 246 268 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF439-203 - 363 6e-38 127.2 97.2 9 11 6.7e-08 5.7e-05 23.3 0.2 1 23 274 296 274 296 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF439-203 - 363 6e-38 127.2 97.2 10 11 1.9e-09 1.6e-06 28.2 0.5 1 23 302 324 302 324 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF439-203 - 363 6e-38 127.2 97.2 11 11 0.00044 0.38 11.3 2.2 1 23 330 354 330 354 0.87 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZNF439-203 - 363 2.4e-35 118.1 89.8 1 11 0.0017 1.4 9.9 0.5 1 23 50 72 50 73 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF439-203 - 363 2.4e-35 118.1 89.8 2 11 9.9e-05 0.084 13.8 4.7 1 23 78 100 78 101 0.97 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF439-203 - 363 2.4e-35 118.1 89.8 3 11 1.3e-05 0.011 16.5 1.6 1 23 106 128 106 129 0.90 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF439-203 - 363 2.4e-35 118.1 89.8 4 11 0.00018 0.16 12.9 5.7 1 23 134 156 134 157 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF439-203 - 363 2.4e-35 118.1 89.8 5 11 3.7e-06 0.0032 18.2 2.7 1 23 162 184 162 185 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF439-203 - 363 2.4e-35 118.1 89.8 6 11 2.7e-06 0.0023 18.6 0.7 1 23 190 212 190 213 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF439-203 - 363 2.4e-35 118.1 89.8 7 11 4.4e-06 0.0038 18.0 1.5 1 23 218 240 218 241 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF439-203 - 363 2.4e-35 118.1 89.8 8 11 1.1e-06 0.00097 19.8 1.7 1 23 246 268 246 269 0.97 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF439-203 - 363 2.4e-35 118.1 89.8 9 11 0.00026 0.22 12.4 0.3 1 19 274 292 274 297 0.87 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF439-203 - 363 2.4e-35 118.1 89.8 10 11 2e-06 0.0017 19.0 0.5 1 23 302 324 302 325 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF439-203 - 363 2.4e-35 118.1 89.8 11 11 0.00018 0.15 13.0 0.8 1 22 330 351 330 353 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF439-203 - 363 1.2e-16 60.2 95.7 1 12 5.8 4.9e+03 -2.3 0.1 19 23 8 12 7 12 0.85 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF439-203 - 363 1.2e-16 60.2 95.7 2 12 0.1 86 3.3 0.9 2 9 50 57 50 58 0.91 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF439-203 - 363 1.2e-16 60.2 95.7 3 12 0.18 1.5e+02 2.5 4.5 2 12 78 88 78 90 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF439-203 - 363 1.2e-16 60.2 95.7 4 12 0.00016 0.14 12.2 2.2 2 13 106 117 106 117 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF439-203 - 363 1.2e-16 60.2 95.7 5 12 0.0022 1.9 8.6 6.1 2 13 134 145 134 159 0.77 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF439-203 - 363 1.2e-16 60.2 95.7 6 12 0.0012 1.1 9.4 0.1 1 11 161 171 161 172 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF439-203 - 363 1.2e-16 60.2 95.7 7 12 2e-05 0.017 15.1 0.7 2 24 190 212 189 215 0.86 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF439-203 - 363 1.2e-16 60.2 95.7 8 12 0.00051 0.44 10.6 3.7 2 25 218 241 218 243 0.92 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF439-203 - 363 1.2e-16 60.2 95.7 9 12 0.0011 0.98 9.5 1.6 2 13 246 257 246 270 0.77 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF439-203 - 363 1.2e-16 60.2 95.7 10 12 1.5e-05 0.012 15.5 0.4 2 24 274 296 274 299 0.88 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF439-203 - 363 1.2e-16 60.2 95.7 11 12 1.1e-05 0.0093 16.0 0.4 2 24 302 324 302 327 0.91 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF439-203 - 363 1.2e-16 60.2 95.7 12 12 0.00012 0.1 12.6 2.1 2 20 330 348 330 355 0.86 C2H2-type zinc finger zf-C2H2_jaz PF12171.8 27 ZNF439-203 - 363 3.3e-14 52.7 64.8 1 11 0.046 39 4.7 0.2 2 21 50 69 49 70 0.89 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF439-203 - 363 3.3e-14 52.7 64.8 2 11 0.24 2.1e+02 2.4 2.4 2 22 78 98 77 100 0.73 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF439-203 - 363 3.3e-14 52.7 64.8 3 11 0.0047 4 7.8 0.7 2 24 106 128 105 129 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF439-203 - 363 3.3e-14 52.7 64.8 4 11 0.00016 0.14 12.5 1.7 2 24 134 156 133 156 0.95 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF439-203 - 363 3.3e-14 52.7 64.8 5 11 1.1 9.1e+02 0.3 0.7 4 11 164 171 162 185 0.76 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF439-203 - 363 3.3e-14 52.7 64.8 6 11 0.0023 2 8.8 0.1 2 22 190 210 189 210 0.95 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF439-203 - 363 3.3e-14 52.7 64.8 7 11 1.6e-07 0.00013 22.1 1.2 2 24 218 240 217 241 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF439-203 - 363 3.3e-14 52.7 64.8 8 11 0.00078 0.66 10.3 0.4 2 24 246 268 245 268 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF439-203 - 363 3.3e-14 52.7 64.8 9 11 0.012 9.9 6.6 0.0 2 20 274 292 273 296 0.88 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF439-203 - 363 3.3e-14 52.7 64.8 10 11 0.00023 0.2 12.0 0.0 4 21 304 321 301 322 0.90 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF439-203 - 363 3.3e-14 52.7 64.8 11 11 0.055 47 4.4 2.1 2 27 330 355 329 355 0.94 Zinc-finger double-stranded RNA-binding Zn-ribbon_8 PF09723.10 40 ZNF439-203 - 363 4.5e-10 39.5 69.9 1 11 0.043 37 4.6 0.1 6 13 50 57 39 66 0.77 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF439-203 - 363 4.5e-10 39.5 69.9 2 11 0.0025 2.1 8.5 7.5 6 34 78 113 77 116 0.82 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF439-203 - 363 4.5e-10 39.5 69.9 3 11 0.00055 0.47 10.6 7.0 6 34 106 141 103 143 0.77 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF439-203 - 363 4.5e-10 39.5 69.9 4 11 0.0027 2.3 8.4 9.0 6 34 134 169 132 172 0.75 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF439-203 - 363 4.5e-10 39.5 69.9 5 11 0.00062 0.53 10.4 5.8 6 36 162 199 160 203 0.76 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF439-203 - 363 4.5e-10 39.5 69.9 6 11 0.0014 1.2 9.3 3.4 6 34 190 225 189 227 0.78 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF439-203 - 363 4.5e-10 39.5 69.9 7 11 0.00031 0.26 11.4 5.7 6 38 218 257 217 258 0.73 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF439-203 - 363 4.5e-10 39.5 69.9 8 11 0.00013 0.11 12.6 5.4 6 35 246 282 245 284 0.73 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF439-203 - 363 4.5e-10 39.5 69.9 9 11 8.3e-05 0.071 13.2 4.5 6 36 274 311 273 314 0.87 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF439-203 - 363 4.5e-10 39.5 69.9 10 11 3.7e-05 0.032 14.4 4.4 6 35 302 338 301 340 0.86 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF439-203 - 363 4.5e-10 39.5 69.9 11 11 0.00097 0.82 9.8 0.8 6 22 330 346 329 355 0.81 Zinc ribbon domain DUF3268 PF11672.8 118 ZNF439-203 - 363 5.1e-07 30.0 41.5 1 6 0.11 96 3.3 0.1 25 44 44 63 33 70 0.78 zinc-finger-containing domain DUF3268 PF11672.8 118 ZNF439-203 - 363 5.1e-07 30.0 41.5 2 6 5.1e-05 0.044 14.1 2.6 3 40 78 115 76 131 0.80 zinc-finger-containing domain DUF3268 PF11672.8 118 ZNF439-203 - 363 5.1e-07 30.0 41.5 3 6 0.037 31 4.9 5.6 2 46 133 183 132 188 0.74 zinc-finger-containing domain DUF3268 PF11672.8 118 ZNF439-203 - 363 5.1e-07 30.0 41.5 4 6 0.033 28 5.1 0.7 4 37 191 224 188 235 0.88 zinc-finger-containing domain DUF3268 PF11672.8 118 ZNF439-203 - 363 5.1e-07 30.0 41.5 5 6 0.00011 0.095 13.0 0.6 2 42 245 285 244 295 0.82 zinc-finger-containing domain DUF3268 PF11672.8 118 ZNF439-203 - 363 5.1e-07 30.0 41.5 6 6 0.00021 0.18 12.1 0.5 2 41 301 340 300 359 0.85 zinc-finger-containing domain zf_UBZ PF18439.1 32 ZNF439-203 - 363 5.7e-07 29.0 53.0 1 11 0.0025 2.1 8.0 0.2 3 19 50 67 48 69 0.77 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF439-203 - 363 5.7e-07 29.0 53.0 2 11 0.44 3.7e+02 0.8 0.4 3 13 78 88 76 92 0.85 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF439-203 - 363 5.7e-07 29.0 53.0 3 11 0.0059 5.1 6.8 0.2 3 13 106 116 104 121 0.87 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF439-203 - 363 5.7e-07 29.0 53.0 4 11 0.014 12 5.6 1.6 3 15 134 146 132 152 0.84 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF439-203 - 363 5.7e-07 29.0 53.0 5 11 0.021 18 5.1 1.0 3 12 162 171 160 176 0.86 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF439-203 - 363 5.7e-07 29.0 53.0 6 11 0.0034 2.9 7.6 0.1 3 20 190 208 188 208 0.87 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF439-203 - 363 5.7e-07 29.0 53.0 7 11 0.018 15 5.3 0.1 3 21 218 237 216 237 0.87 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF439-203 - 363 5.7e-07 29.0 53.0 8 11 0.011 9.7 5.9 0.1 3 13 246 256 244 265 0.80 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF439-203 - 363 5.7e-07 29.0 53.0 9 11 0.014 12 5.6 0.1 3 14 274 285 272 292 0.79 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF439-203 - 363 5.7e-07 29.0 53.0 10 11 0.0052 4.5 7.0 0.1 3 15 302 314 300 320 0.82 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF439-203 - 363 5.7e-07 29.0 53.0 11 11 0.042 36 4.1 0.4 3 12 330 339 328 340 0.86 Ubiquitin-Binding Zinc Finger zf-trcl PF13451.6 48 ZNF439-203 - 363 7.3e-07 29.0 48.0 1 8 0.0018 1.6 8.7 0.5 3 39 48 83 47 86 0.78 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF439-203 - 363 7.3e-07 29.0 48.0 2 8 0.00066 0.56 10.1 2.5 3 41 104 141 102 144 0.80 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF439-203 - 363 7.3e-07 29.0 48.0 3 8 0.025 21 5.1 1.0 3 14 160 171 158 173 0.88 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF439-203 - 363 7.3e-07 29.0 48.0 4 8 0.41 3.5e+02 1.2 0.3 5 12 190 197 187 199 0.80 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF439-203 - 363 7.3e-07 29.0 48.0 5 8 0.13 1.1e+02 2.8 0.1 4 14 217 227 215 239 0.83 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF439-203 - 363 7.3e-07 29.0 48.0 6 8 0.0032 2.8 7.9 4.3 3 42 244 282 242 286 0.71 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF439-203 - 363 7.3e-07 29.0 48.0 7 8 0.014 12 5.9 0.1 3 14 300 311 298 315 0.88 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF439-203 - 363 7.3e-07 29.0 48.0 8 8 0.016 14 5.7 0.1 3 16 328 341 326 348 0.86 Probable zinc-ribbon domain # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF439-203.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF439-203.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF439-203.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF439-203.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF439-203.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:06:30 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF439-204.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF439-204.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF439-204.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF439-204.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF439-204.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:06:30 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF439-205.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF439-205.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF439-205.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF439-205.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF439-205.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:06:30 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZNF440-201 - 595 9.3e-75 244.0 98.0 1 12 2.9e-06 0.0052 17.2 0.3 7 25 164 182 163 183 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF440-201 - 595 9.3e-75 244.0 98.0 2 12 1.1e-08 2e-05 24.8 3.1 2 24 187 209 186 211 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF440-201 - 595 9.3e-75 244.0 98.0 3 12 3.1e-08 5.5e-05 23.4 2.1 5 25 218 238 216 239 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF440-201 - 595 9.3e-75 244.0 98.0 4 12 2.3e-08 4.2e-05 23.8 1.5 5 25 246 266 244 267 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF440-201 - 595 9.3e-75 244.0 98.0 5 12 8.9e-11 1.6e-07 31.4 2.2 1 25 270 294 270 295 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF440-201 - 595 9.3e-75 244.0 98.0 6 12 3.6e-06 0.0065 16.9 0.4 5 23 302 320 298 323 0.90 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF440-201 - 595 9.3e-75 244.0 98.0 7 12 7.4e-09 1.3e-05 25.4 0.5 2 24 327 349 326 349 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF440-201 - 595 9.3e-75 244.0 98.0 8 12 3.4e-10 6.2e-07 29.6 3.5 2 24 355 377 354 379 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF440-201 - 595 9.3e-75 244.0 98.0 9 12 4.1e-13 7.3e-10 38.8 1.6 1 25 382 406 382 407 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF440-201 - 595 9.3e-75 244.0 98.0 10 12 2.2e-10 3.9e-07 30.2 2.5 1 25 410 434 410 435 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF440-201 - 595 9.3e-75 244.0 98.0 11 12 7.2e-08 0.00013 22.2 2.1 4 24 447 467 438 469 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF440-201 - 595 9.3e-75 244.0 98.0 12 12 6.7e-07 0.0012 19.2 0.8 2 18 473 489 472 491 0.92 Zinc-finger double domain zf-C2H2_4 PF13894.6 24 ZNF440-201 - 595 3.2e-35 117.7 97.3 1 12 1.6 2.8e+03 -0.3 0.0 4 12 78 85 78 88 0.82 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF440-201 - 595 3.2e-35 117.7 97.3 2 12 1.5e-06 0.0027 18.4 1.4 2 23 173 194 172 195 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF440-201 - 595 3.2e-35 117.7 97.3 3 12 0.0003 0.53 11.3 4.1 1 23 200 222 200 223 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF440-201 - 595 3.2e-35 117.7 97.3 4 12 0.00033 0.59 11.1 5.0 2 23 229 250 228 251 0.88 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF440-201 - 595 3.2e-35 117.7 97.3 5 12 0.00027 0.48 11.4 0.4 5 23 260 278 258 279 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF440-201 - 595 3.2e-35 117.7 97.3 6 12 9.1e-06 0.016 16.0 2.0 1 23 284 306 284 307 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF440-201 - 595 3.2e-35 117.7 97.3 7 12 4.4e-06 0.0079 17.0 0.8 1 23 312 334 312 335 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF440-201 - 595 3.2e-35 117.7 97.3 8 12 2e-07 0.00036 21.1 2.0 1 23 340 362 340 363 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF440-201 - 595 3.2e-35 117.7 97.3 9 12 4.2e-06 0.0075 17.0 2.8 1 23 368 390 368 391 0.97 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF440-201 - 595 3.2e-35 117.7 97.3 10 12 1.7e-05 0.03 15.2 1.2 1 20 396 415 396 419 0.89 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF440-201 - 595 3.2e-35 117.7 97.3 11 12 1.6e-05 0.029 15.2 0.2 1 22 424 445 424 447 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF440-201 - 595 3.2e-35 117.7 97.3 12 12 4.9e-07 0.00087 19.9 3.6 1 23 458 480 458 481 0.97 C2H2-type zinc finger zf-C2H2 PF00096.26 23 ZNF440-201 - 595 2.3e-33 112.8 107.4 1 12 1.4 2.5e+03 -0.7 0.1 5 11 79 85 78 86 0.87 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF440-201 - 595 2.3e-33 112.8 107.4 2 12 1.3e-06 0.0023 18.3 1.7 3 23 174 194 173 194 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF440-201 - 595 2.3e-33 112.8 107.4 3 12 0.022 40 4.9 4.5 1 23 200 222 200 222 0.86 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF440-201 - 595 2.3e-33 112.8 107.4 4 12 0.00093 1.7 9.3 6.0 2 23 229 250 228 250 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF440-201 - 595 2.3e-33 112.8 107.4 5 12 0.0001 0.19 12.3 0.7 5 23 260 278 259 278 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF440-201 - 595 2.3e-33 112.8 107.4 6 12 3.9e-05 0.07 13.6 2.3 1 23 284 306 284 306 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF440-201 - 595 2.3e-33 112.8 107.4 7 12 5.5e-06 0.0098 16.3 0.6 1 23 312 334 312 334 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF440-201 - 595 2.3e-33 112.8 107.4 8 12 6.3e-06 0.011 16.1 2.1 1 23 340 362 340 362 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF440-201 - 595 2.3e-33 112.8 107.4 9 12 2.6e-08 4.7e-05 23.6 3.5 1 23 368 390 368 390 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF440-201 - 595 2.3e-33 112.8 107.4 10 12 3.8e-09 6.8e-06 26.3 1.5 1 23 396 418 396 418 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF440-201 - 595 2.3e-33 112.8 107.4 11 12 6.6e-07 0.0012 19.2 1.9 1 23 424 448 424 452 0.95 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF440-201 - 595 2.3e-33 112.8 107.4 12 12 5.9e-05 0.11 13.1 4.3 1 23 458 480 458 480 0.99 Zinc finger, C2H2 type KRAB PF01352.27 42 ZNF440-201 - 595 7.3e-24 83.2 0.1 1 1 7.2e-27 1.3e-23 82.4 0.1 1 42 3 44 3 44 0.99 KRAB box zf-C2H2_jaz PF12171.8 27 ZNF440-201 - 595 4.5e-13 49.1 65.9 1 11 2.1e-05 0.037 14.3 0.1 4 21 174 191 172 192 0.95 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF440-201 - 595 4.5e-13 49.1 65.9 2 11 0.36 6.5e+02 0.8 2.2 2 12 200 210 199 219 0.90 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF440-201 - 595 4.5e-13 49.1 65.9 3 11 0.14 2.6e+02 2.1 2.0 4 24 230 250 229 250 0.88 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF440-201 - 595 4.5e-13 49.1 65.9 4 11 0.0025 4.4 7.7 0.0 6 22 260 276 259 276 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF440-201 - 595 4.5e-13 49.1 65.9 5 11 0.6 1.1e+03 0.1 0.8 4 12 286 294 284 307 0.72 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF440-201 - 595 4.5e-13 49.1 65.9 6 11 0.0048 8.6 6.8 0.1 2 22 312 332 311 332 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF440-201 - 595 4.5e-13 49.1 65.9 7 11 3.3e-05 0.059 13.7 1.4 2 22 340 360 339 360 0.95 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF440-201 - 595 4.5e-13 49.1 65.9 8 11 0.00043 0.78 10.1 0.6 2 24 368 390 367 390 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF440-201 - 595 4.5e-13 49.1 65.9 9 11 0.00088 1.6 9.1 0.1 2 20 396 414 395 418 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF440-201 - 595 4.5e-13 49.1 65.9 10 11 9.9e-05 0.18 12.1 0.4 2 26 424 448 423 449 0.91 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF440-201 - 595 4.5e-13 49.1 65.9 11 11 0.00036 0.65 10.4 3.4 2 24 458 480 457 480 0.95 Zinc-finger double-stranded RNA-binding zf-C2H2_6 PF13912.6 27 ZNF440-201 - 595 6.4e-13 48.4 91.6 1 12 7.1 1.3e+04 -3.6 0.0 10 19 36 45 35 45 0.84 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF440-201 - 595 6.4e-13 48.4 91.6 2 12 0.002 3.6 7.7 0.2 4 13 174 183 173 194 0.83 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF440-201 - 595 6.4e-13 48.4 91.6 3 12 0.15 2.7e+02 1.7 4.5 2 12 200 210 200 212 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF440-201 - 595 6.4e-13 48.4 91.6 4 12 0.023 41 4.3 7.0 3 13 229 239 229 253 0.84 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF440-201 - 595 6.4e-13 48.4 91.6 5 12 0.073 1.3e+02 2.7 0.0 5 13 259 267 259 280 0.88 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF440-201 - 595 6.4e-13 48.4 91.6 6 12 0.00079 1.4 9.0 0.4 1 11 283 293 283 294 0.90 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF440-201 - 595 6.4e-13 48.4 91.6 7 12 2.5e-05 0.045 13.8 0.9 2 21 312 331 311 337 0.86 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF440-201 - 595 6.4e-13 48.4 91.6 8 12 0.0039 7.1 6.8 2.3 2 13 340 351 340 363 0.84 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF440-201 - 595 6.4e-13 48.4 91.6 9 12 6.7e-05 0.12 12.4 3.4 2 24 368 390 368 393 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF440-201 - 595 6.4e-13 48.4 91.6 10 12 2e-05 0.037 14.1 1.9 2 24 396 418 396 421 0.91 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF440-201 - 595 6.4e-13 48.4 91.6 11 12 1.9e-06 0.0034 17.3 1.0 2 22 424 444 424 448 0.92 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF440-201 - 595 6.4e-13 48.4 91.6 12 12 0.0031 5.5 7.1 1.9 1 11 457 467 457 475 0.94 C2H2-type zinc finger # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF440-201.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF440-201.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF440-201.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF440-201.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF440-201.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:06:31 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF440-202.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF440-202.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF440-202.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF440-202.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF440-202.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:06:31 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF440-203.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF440-203.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF440-203.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF440-203.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF440-203.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:06:32 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF440-204.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF440-204.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF440-204.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF440-204.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF440-204.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:06:32 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF440-205.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF440-205.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF440-205.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF440-205.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF440-205.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:06:32 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF440-206.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF440-206.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF440-206.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF440-206.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF440-206.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:06:33 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZNF441-201 - 693 1.1e-116 376.5 167.5 1 20 2.3 3.4e+03 -1.2 1.1 11 24 137 150 126 152 0.71 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF441-201 - 693 1.1e-116 376.5 167.5 2 20 0.0068 10 6.8 0.6 5 22 159 176 156 179 0.84 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF441-201 - 693 1.1e-116 376.5 167.5 3 20 2.3e-05 0.034 14.6 0.0 1 24 182 205 182 206 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF441-201 - 693 1.1e-116 376.5 167.5 4 20 8.1e-05 0.12 12.8 0.5 5 24 212 233 211 234 0.86 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF441-201 - 693 1.1e-116 376.5 167.5 5 20 3.3e-10 4.9e-07 29.9 3.0 4 25 241 262 240 263 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF441-201 - 693 1.1e-116 376.5 167.5 6 20 7.1e-07 0.0011 19.3 1.6 7 25 272 290 271 291 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF441-201 - 693 1.1e-116 376.5 167.5 7 20 6.2e-10 9.3e-07 29.0 0.3 2 25 295 318 294 319 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF441-201 - 693 1.1e-116 376.5 167.5 8 20 1.1e-12 1.6e-09 37.7 2.1 2 25 323 346 322 347 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF441-201 - 693 1.1e-116 376.5 167.5 9 20 4.6e-11 6.9e-08 32.6 0.5 2 25 351 374 350 375 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF441-201 - 693 1.1e-116 376.5 167.5 10 20 3.8e-06 0.0057 17.0 3.7 3 24 380 400 379 402 0.89 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF441-201 - 693 1.1e-116 376.5 167.5 11 20 3.8e-09 5.7e-06 26.5 4.4 2 24 406 428 405 430 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF441-201 - 693 1.1e-116 376.5 167.5 12 20 1.3e-10 1.9e-07 31.2 0.6 2 25 434 457 433 458 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF441-201 - 693 1.1e-116 376.5 167.5 13 20 2.3e-09 3.4e-06 27.2 2.0 4 23 464 483 462 486 0.90 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF441-201 - 693 1.1e-116 376.5 167.5 14 20 4.1e-10 6.1e-07 29.6 0.4 2 25 490 513 489 514 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF441-201 - 693 1.1e-116 376.5 167.5 15 20 1.3e-11 1.9e-08 34.4 1.5 2 25 518 541 517 542 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF441-201 - 693 1.1e-116 376.5 167.5 16 20 2.2e-07 0.00033 20.9 0.2 5 23 549 567 546 569 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF441-201 - 693 1.1e-116 376.5 167.5 17 20 1.6e-09 2.4e-06 27.7 1.1 2 25 574 597 573 598 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF441-201 - 693 1.1e-116 376.5 167.5 18 20 2e-12 3e-09 36.9 2.5 3 26 603 626 601 626 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF441-201 - 693 1.1e-116 376.5 167.5 19 20 1.1e-08 1.7e-05 25.0 5.1 2 22 630 650 629 654 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF441-201 - 693 1.1e-116 376.5 167.5 20 20 7.1e-06 0.011 16.2 8.5 4 24 660 680 657 682 0.93 Zinc-finger double domain zf-C2H2_4 PF13894.6 24 ZNF441-201 - 693 1.7e-53 174.6 174.9 1 21 2.8 4.2e+03 -0.9 0.0 4 12 79 87 77 92 0.77 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF441-201 - 693 1.7e-53 174.6 174.9 2 21 0.16 2.4e+02 3.0 0.2 4 24 144 164 144 164 0.83 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF441-201 - 693 1.7e-53 174.6 174.9 3 21 1.3e-06 0.0019 18.9 1.1 3 24 171 191 169 191 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF441-201 - 693 1.7e-53 174.6 174.9 4 21 0.64 9.6e+02 1.1 0.1 2 10 197 205 196 216 0.76 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF441-201 - 693 1.7e-53 174.6 174.9 5 21 0.059 88 4.4 0.1 5 23 228 246 227 247 0.91 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF441-201 - 693 1.7e-53 174.6 174.9 6 21 0.006 9 7.4 4.3 1 15 252 266 252 275 0.73 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF441-201 - 693 1.7e-53 174.6 174.9 7 21 4.9e-05 0.074 13.9 1.3 1 23 280 302 280 303 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF441-201 - 693 1.7e-53 174.6 174.9 8 21 6e-07 0.00089 19.9 2.1 1 23 308 330 308 331 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF441-201 - 693 1.7e-53 174.6 174.9 9 21 2.3e-08 3.4e-05 24.3 2.0 1 23 336 358 336 359 0.97 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF441-201 - 693 1.7e-53 174.6 174.9 10 21 8.6e-05 0.13 13.2 3.6 1 23 364 386 364 387 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF441-201 - 693 1.7e-53 174.6 174.9 11 21 0.00067 1 10.4 1.3 1 23 392 413 392 414 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF441-201 - 693 1.7e-53 174.6 174.9 12 21 7e-05 0.1 13.5 3.8 1 23 419 441 419 442 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF441-201 - 693 1.7e-53 174.6 174.9 13 21 9.1e-07 0.0014 19.3 1.2 1 23 447 469 447 470 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF441-201 - 693 1.7e-53 174.6 174.9 14 21 2.5e-05 0.038 14.8 1.8 1 23 475 497 475 498 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF441-201 - 693 1.7e-53 174.6 174.9 15 21 2.3e-07 0.00035 21.2 2.0 1 23 503 525 503 526 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF441-201 - 693 1.7e-53 174.6 174.9 16 21 9.7e-06 0.015 16.1 1.0 1 23 531 553 531 554 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF441-201 - 693 1.7e-53 174.6 174.9 17 21 5.2e-06 0.0077 17.0 0.3 2 23 560 581 559 582 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF441-201 - 693 1.7e-53 174.6 174.9 18 21 2.2e-06 0.0033 18.1 1.2 1 23 587 609 587 610 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF441-201 - 693 1.7e-53 174.6 174.9 19 21 6.4e-05 0.095 13.6 1.4 1 23 615 637 615 638 0.84 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF441-201 - 693 1.7e-53 174.6 174.9 20 21 1.1e-05 0.017 16.0 6.9 1 23 643 665 643 666 0.97 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF441-201 - 693 1.7e-53 174.6 174.9 21 21 0.00047 0.7 10.9 5.9 1 23 671 693 671 693 0.97 C2H2-type zinc finger zf-C2H2 PF00096.26 23 ZNF441-201 - 693 6.8e-51 168.0 182.6 1 20 0.086 1.3e+02 3.3 0.6 5 21 145 161 143 164 0.90 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF441-201 - 693 6.8e-51 168.0 182.6 2 20 0.00061 0.91 10.1 0.8 6 23 171 190 169 191 0.81 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF441-201 - 693 6.8e-51 168.0 182.6 3 20 2.2 3.2e+03 -1.1 0.1 3 10 198 205 197 211 0.84 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF441-201 - 693 6.8e-51 168.0 182.6 4 20 0.019 28 5.4 0.1 5 23 228 246 227 246 0.95 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF441-201 - 693 6.8e-51 168.0 182.6 5 20 0.11 1.7e+02 3.0 5.9 1 11 252 262 252 267 0.91 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF441-201 - 693 6.8e-51 168.0 182.6 6 20 2.3e-07 0.00034 20.9 1.5 1 23 280 302 280 302 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF441-201 - 693 6.8e-51 168.0 182.6 7 20 7.4e-06 0.011 16.1 2.8 1 23 308 330 308 330 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF441-201 - 693 6.8e-51 168.0 182.6 8 20 3.6e-08 5.3e-05 23.4 2.9 1 23 336 358 336 358 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF441-201 - 693 6.8e-51 168.0 182.6 9 20 7.7e-05 0.12 12.9 4.2 1 23 364 386 364 386 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF441-201 - 693 6.8e-51 168.0 182.6 10 20 0.00059 0.88 10.1 0.9 5 23 395 413 392 413 0.94 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF441-201 - 693 6.8e-51 168.0 182.6 11 20 0.00057 0.86 10.2 4.1 1 23 419 441 419 441 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF441-201 - 693 6.8e-51 168.0 182.6 12 20 1.2e-06 0.0019 18.6 1.6 1 23 447 469 447 469 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF441-201 - 693 6.8e-51 168.0 182.6 13 20 3.1e-06 0.0046 17.3 2.1 1 23 475 497 475 497 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF441-201 - 693 6.8e-51 168.0 182.6 14 20 2.3e-08 3.5e-05 24.0 2.8 1 23 503 525 503 525 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF441-201 - 693 6.8e-51 168.0 182.6 15 20 7e-07 0.0011 19.4 1.4 1 23 531 553 531 553 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF441-201 - 693 6.8e-51 168.0 182.6 16 20 2.7e-06 0.0041 17.5 0.4 3 23 561 581 559 581 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF441-201 - 693 6.8e-51 168.0 182.6 17 20 2.9e-07 0.00043 20.6 1.7 1 23 587 609 587 609 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF441-201 - 693 6.8e-51 168.0 182.6 18 20 2.2e-08 3.3e-05 24.1 1.4 1 23 615 637 615 637 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF441-201 - 693 6.8e-51 168.0 182.6 19 20 0.00038 0.56 10.8 7.4 1 23 643 665 643 665 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF441-201 - 693 6.8e-51 168.0 182.6 20 20 0.047 71 4.1 6.5 1 23 671 693 671 693 0.96 Zinc finger, C2H2 type KRAB PF01352.27 42 ZNF441-201 - 693 5.8e-20 70.7 0.0 1 1 6.4e-23 9.6e-20 70.0 0.0 1 42 3 44 3 44 0.97 KRAB box zf-C2H2_6 PF13912.6 27 ZNF441-201 - 693 7.1e-16 57.8 140.6 1 18 4.3e-05 0.064 13.3 1.1 2 25 169 191 168 192 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF441-201 - 693 7.1e-16 57.8 140.6 2 18 0.27 4e+02 1.2 0.1 3 11 197 205 196 205 0.89 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF441-201 - 693 7.1e-16 57.8 140.6 3 18 0.0042 6.3 6.9 0.8 2 12 252 262 252 262 0.92 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF441-201 - 693 7.1e-16 57.8 140.6 4 18 0.0013 2 8.5 0.8 2 11 280 289 279 295 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF441-201 - 693 7.1e-16 57.8 140.6 5 18 8.6e-05 0.13 12.3 1.7 2 24 308 330 308 333 0.95 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF441-201 - 693 7.1e-16 57.8 140.6 6 18 0.00011 0.16 12.0 2.3 2 24 336 358 336 360 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF441-201 - 693 7.1e-16 57.8 140.6 7 18 0.00053 0.79 9.8 0.7 2 13 364 375 364 375 0.91 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF441-201 - 693 7.1e-16 57.8 140.6 8 18 1.4 2.1e+03 -1.1 1.0 6 14 395 403 392 414 0.74 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF441-201 - 693 7.1e-16 57.8 140.6 9 18 0.0049 7.3 6.7 1.1 2 11 419 428 419 428 0.96 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF441-201 - 693 7.1e-16 57.8 140.6 10 18 0.00017 0.26 11.3 1.2 2 14 447 459 447 471 0.78 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF441-201 - 693 7.1e-16 57.8 140.6 11 18 0.0021 3.2 7.9 2.0 2 24 475 497 475 498 0.87 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF441-201 - 693 7.1e-16 57.8 140.6 12 18 8.9e-05 0.13 12.3 0.5 2 13 503 514 503 524 0.92 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF441-201 - 693 7.1e-16 57.8 140.6 13 18 0.0012 1.7 8.7 0.7 2 13 531 542 531 543 0.96 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF441-201 - 693 7.1e-16 57.8 140.6 14 18 0.0013 1.9 8.6 0.5 2 24 559 581 559 583 0.95 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF441-201 - 693 7.1e-16 57.8 140.6 15 18 0.0014 2.1 8.4 0.4 2 11 587 596 587 609 0.92 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF441-201 - 693 7.1e-16 57.8 140.6 16 18 0.00086 1.3 9.1 1.4 2 12 615 625 615 626 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF441-201 - 693 7.1e-16 57.8 140.6 17 18 0.053 79 3.4 4.5 2 12 643 653 643 666 0.86 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF441-201 - 693 7.1e-16 57.8 140.6 18 18 0.04 60 3.8 4.2 2 12 671 681 671 689 0.93 C2H2-type zinc finger zf-C2H2_jaz PF12171.8 27 ZNF441-201 - 693 4.6e-11 42.7 107.2 1 18 1.1 1.6e+03 -0.4 0.2 4 21 171 187 169 188 0.71 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF441-201 - 693 4.6e-11 42.7 107.2 2 18 9.7 1.4e+04 -3.5 0.3 4 7 198 201 197 202 0.87 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF441-201 - 693 4.6e-11 42.7 107.2 3 18 2 2.9e+03 -1.3 0.4 4 12 254 262 251 262 0.84 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF441-201 - 693 4.6e-11 42.7 107.2 4 18 0.029 43 4.5 0.7 2 21 280 299 279 300 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF441-201 - 693 4.6e-11 42.7 107.2 5 18 2.9e-05 0.044 14.1 0.1 2 24 308 330 307 330 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF441-201 - 693 4.6e-11 42.7 107.2 6 18 0.0053 7.9 6.9 0.8 2 21 336 355 335 358 0.84 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF441-201 - 693 4.6e-11 42.7 107.2 7 18 0.0024 3.6 8.0 0.4 2 23 364 385 363 386 0.90 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF441-201 - 693 4.6e-11 42.7 107.2 8 18 0.34 5.1e+02 1.1 0.8 6 24 395 413 394 413 0.89 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF441-201 - 693 4.6e-11 42.7 107.2 9 18 0.44 6.6e+02 0.8 0.9 2 12 419 429 418 429 0.89 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF441-201 - 693 4.6e-11 42.7 107.2 10 18 0.00022 0.32 11.3 1.0 2 24 447 469 446 469 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF441-201 - 693 4.6e-11 42.7 107.2 11 18 0.03 45 4.5 0.3 2 21 475 494 474 495 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF441-201 - 693 4.6e-11 42.7 107.2 12 18 4.6e-06 0.0068 16.7 0.1 2 22 503 523 502 523 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF441-201 - 693 4.6e-11 42.7 107.2 13 18 1.9e-05 0.028 14.7 0.2 2 24 531 553 530 553 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF441-201 - 693 4.6e-11 42.7 107.2 14 18 0.12 1.7e+02 2.6 0.1 4 23 561 580 559 581 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF441-201 - 693 4.6e-11 42.7 107.2 15 18 0.00064 0.95 9.8 0.1 2 24 587 609 586 609 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF441-201 - 693 4.6e-11 42.7 107.2 16 18 0.00095 1.4 9.3 0.2 2 22 615 635 614 635 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF441-201 - 693 4.6e-11 42.7 107.2 17 18 0.0013 1.9 8.8 2.9 2 24 643 665 642 666 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF441-201 - 693 4.6e-11 42.7 107.2 18 18 2.2 3.3e+03 -1.4 2.9 2 21 671 690 670 692 0.85 Zinc-finger double-stranded RNA-binding # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF441-201.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF441-201.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF441-201.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF441-201.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF441-201.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:06:33 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZNF441-202 - 649 2.7e-117 378.4 167.6 1 20 2.5 3.2e+03 -1.1 1.1 11 24 93 106 82 108 0.71 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF441-202 - 649 2.7e-117 378.4 167.6 2 20 0.0073 9.4 6.9 0.6 5 22 115 132 112 135 0.84 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF441-202 - 649 2.7e-117 378.4 167.6 3 20 2.5e-05 0.032 14.7 0.0 1 24 138 161 138 162 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF441-202 - 649 2.7e-117 378.4 167.6 4 20 8.7e-05 0.11 12.9 0.5 5 24 168 189 167 190 0.86 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF441-202 - 649 2.7e-117 378.4 167.6 5 20 3.6e-10 4.6e-07 30.0 3.0 4 25 197 218 196 219 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF441-202 - 649 2.7e-117 378.4 167.6 6 20 7.7e-07 0.00099 19.4 1.6 7 25 228 246 227 247 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF441-202 - 649 2.7e-117 378.4 167.6 7 20 6.7e-10 8.6e-07 29.1 0.3 2 25 251 274 250 275 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF441-202 - 649 2.7e-117 378.4 167.6 8 20 1.2e-12 1.5e-09 37.8 2.1 2 25 279 302 278 303 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF441-202 - 649 2.7e-117 378.4 167.6 9 20 5e-11 6.4e-08 32.7 0.5 2 25 307 330 306 331 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF441-202 - 649 2.7e-117 378.4 167.6 10 20 4.1e-06 0.0053 17.1 3.7 3 24 336 356 335 358 0.89 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF441-202 - 649 2.7e-117 378.4 167.6 11 20 4.1e-09 5.3e-06 26.6 4.4 2 24 362 384 361 386 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF441-202 - 649 2.7e-117 378.4 167.6 12 20 1.4e-10 1.8e-07 31.3 0.6 2 25 390 413 389 414 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF441-202 - 649 2.7e-117 378.4 167.6 13 20 2.5e-09 3.2e-06 27.3 2.0 4 23 420 439 418 442 0.90 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF441-202 - 649 2.7e-117 378.4 167.6 14 20 4.4e-10 5.7e-07 29.7 0.4 2 25 446 469 445 470 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF441-202 - 649 2.7e-117 378.4 167.6 15 20 1.4e-11 1.7e-08 34.5 1.5 2 25 474 497 473 498 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF441-202 - 649 2.7e-117 378.4 167.6 16 20 2.4e-07 0.00031 21.0 0.2 5 23 505 523 502 525 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF441-202 - 649 2.7e-117 378.4 167.6 17 20 1.7e-09 2.2e-06 27.8 1.1 2 25 530 553 529 554 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF441-202 - 649 2.7e-117 378.4 167.6 18 20 2.2e-12 2.8e-09 37.0 2.5 3 26 559 582 557 582 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF441-202 - 649 2.7e-117 378.4 167.6 19 20 1.3e-08 1.7e-05 25.0 5.2 2 22 586 606 585 610 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF441-202 - 649 2.7e-117 378.4 167.6 20 20 7.7e-06 0.0098 16.3 8.5 4 24 616 636 613 638 0.93 Zinc-finger double domain zf-C2H2_4 PF13894.6 24 ZNF441-202 - 649 3.6e-54 176.7 174.9 1 21 3.1 3.9e+03 -0.8 0.0 4 12 35 43 33 48 0.77 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF441-202 - 649 3.6e-54 176.7 174.9 2 21 0.17 2.2e+02 3.1 0.2 4 24 100 120 100 120 0.83 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF441-202 - 649 3.6e-54 176.7 174.9 3 21 1.4e-06 0.0018 19.0 1.1 3 24 127 147 125 147 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF441-202 - 649 3.6e-54 176.7 174.9 4 21 0.67 8.6e+02 1.3 0.1 2 10 153 161 152 173 0.76 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF441-202 - 649 3.6e-54 176.7 174.9 5 21 0.064 81 4.5 0.1 5 23 184 202 183 203 0.91 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF441-202 - 649 3.6e-54 176.7 174.9 6 21 0.0065 8.4 7.5 4.3 1 15 208 222 208 231 0.73 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF441-202 - 649 3.6e-54 176.7 174.9 7 21 5.3e-05 0.068 14.0 1.3 1 23 236 258 236 259 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF441-202 - 649 3.6e-54 176.7 174.9 8 21 6.5e-07 0.00083 20.0 2.1 1 23 264 286 264 287 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF441-202 - 649 3.6e-54 176.7 174.9 9 21 2.4e-08 3.1e-05 24.4 2.0 1 23 292 314 292 315 0.97 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF441-202 - 649 3.6e-54 176.7 174.9 10 21 9.3e-05 0.12 13.3 3.6 1 23 320 342 320 343 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF441-202 - 649 3.6e-54 176.7 174.9 11 21 0.00072 0.93 10.5 1.3 1 23 348 369 348 370 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF441-202 - 649 3.6e-54 176.7 174.9 12 21 7.6e-05 0.097 13.6 3.8 1 23 375 397 375 398 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF441-202 - 649 3.6e-54 176.7 174.9 13 21 9.8e-07 0.0013 19.4 1.2 1 23 403 425 403 426 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF441-202 - 649 3.6e-54 176.7 174.9 14 21 2.7e-05 0.035 14.9 1.8 1 23 431 453 431 454 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF441-202 - 649 3.6e-54 176.7 174.9 15 21 2.5e-07 0.00032 21.3 2.0 1 23 459 481 459 482 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF441-202 - 649 3.6e-54 176.7 174.9 16 21 1e-05 0.013 16.2 1.0 1 23 487 509 487 510 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF441-202 - 649 3.6e-54 176.7 174.9 17 21 5.6e-06 0.0072 17.1 0.3 2 23 516 537 515 538 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF441-202 - 649 3.6e-54 176.7 174.9 18 21 2.4e-06 0.0031 18.2 1.2 1 23 543 565 543 566 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF441-202 - 649 3.6e-54 176.7 174.9 19 21 6.9e-05 0.088 13.7 1.4 1 23 571 593 571 594 0.84 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF441-202 - 649 3.6e-54 176.7 174.9 20 21 1.2e-05 0.015 16.1 6.9 1 23 599 621 599 622 0.97 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF441-202 - 649 3.6e-54 176.7 174.9 21 21 0.0005 0.65 11.0 5.9 1 23 627 649 627 649 0.97 C2H2-type zinc finger zf-C2H2 PF00096.26 23 ZNF441-202 - 649 1.6e-51 170.0 182.6 1 20 0.093 1.2e+02 3.4 0.6 5 21 101 117 99 120 0.90 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF441-202 - 649 1.6e-51 170.0 182.6 2 20 0.00066 0.84 10.2 0.8 6 23 127 146 125 147 0.81 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF441-202 - 649 1.6e-51 170.0 182.6 3 20 2.4 3e+03 -1.0 0.1 3 10 154 161 153 167 0.84 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF441-202 - 649 1.6e-51 170.0 182.6 4 20 0.02 26 5.5 0.1 5 23 184 202 183 202 0.95 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF441-202 - 649 1.6e-51 170.0 182.6 5 20 0.12 1.5e+02 3.1 5.9 1 11 208 218 208 223 0.91 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF441-202 - 649 1.6e-51 170.0 182.6 6 20 2.5e-07 0.00031 21.0 1.5 1 23 236 258 236 258 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF441-202 - 649 1.6e-51 170.0 182.6 7 20 8e-06 0.01 16.2 2.8 1 23 264 286 264 286 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF441-202 - 649 1.6e-51 170.0 182.6 8 20 3.9e-08 4.9e-05 23.5 2.9 1 23 292 314 292 314 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF441-202 - 649 1.6e-51 170.0 182.6 9 20 8.3e-05 0.11 13.0 4.2 1 23 320 342 320 342 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF441-202 - 649 1.6e-51 170.0 182.6 10 20 0.00064 0.82 10.3 0.9 5 23 351 369 348 369 0.94 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF441-202 - 649 1.6e-51 170.0 182.6 11 20 0.00062 0.79 10.3 4.1 1 23 375 397 375 397 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF441-202 - 649 1.6e-51 170.0 182.6 12 20 1.4e-06 0.0017 18.7 1.6 1 23 403 425 403 425 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF441-202 - 649 1.6e-51 170.0 182.6 13 20 3.3e-06 0.0042 17.5 2.1 1 23 431 453 431 453 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF441-202 - 649 1.6e-51 170.0 182.6 14 20 2.5e-08 3.2e-05 24.1 2.8 1 23 459 481 459 481 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF441-202 - 649 1.6e-51 170.0 182.6 15 20 7.6e-07 0.00097 19.5 1.4 1 23 487 509 487 509 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF441-202 - 649 1.6e-51 170.0 182.6 16 20 2.9e-06 0.0038 17.6 0.4 3 23 517 537 515 537 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF441-202 - 649 1.6e-51 170.0 182.6 17 20 3.1e-07 0.0004 20.7 1.7 1 23 543 565 543 565 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF441-202 - 649 1.6e-51 170.0 182.6 18 20 2.4e-08 3e-05 24.2 1.4 1 23 571 593 571 593 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF441-202 - 649 1.6e-51 170.0 182.6 19 20 0.00041 0.52 10.9 7.4 1 23 599 621 599 621 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF441-202 - 649 1.6e-51 170.0 182.6 20 20 0.051 66 4.3 6.5 1 23 627 649 627 649 0.96 Zinc finger, C2H2 type zf-C2H2_6 PF13912.6 27 ZNF441-202 - 649 1.9e-16 59.6 140.6 1 18 4.6e-05 0.059 13.4 1.1 2 25 125 147 124 148 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF441-202 - 649 1.9e-16 59.6 140.6 2 18 0.29 3.7e+02 1.3 0.1 3 11 153 161 152 161 0.89 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF441-202 - 649 1.9e-16 59.6 140.6 3 18 0.0046 5.9 7.0 0.8 2 12 208 218 208 218 0.92 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF441-202 - 649 1.9e-16 59.6 140.6 4 18 0.0014 1.8 8.6 0.8 2 11 236 245 235 251 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF441-202 - 649 1.9e-16 59.6 140.6 5 18 9.3e-05 0.12 12.4 1.7 2 24 264 286 264 289 0.95 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF441-202 - 649 1.9e-16 59.6 140.6 6 18 0.00012 0.15 12.1 2.3 2 24 292 314 292 316 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF441-202 - 649 1.9e-16 59.6 140.6 7 18 0.00057 0.73 9.9 0.7 2 13 320 331 320 331 0.91 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF441-202 - 649 1.9e-16 59.6 140.6 8 18 1.5 1.9e+03 -1.0 1.0 6 14 351 359 348 370 0.74 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF441-202 - 649 1.9e-16 59.6 140.6 9 18 0.0053 6.8 6.8 1.1 2 11 375 384 375 384 0.96 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF441-202 - 649 1.9e-16 59.6 140.6 10 18 0.00017 0.21 11.6 1.2 2 20 403 421 403 428 0.77 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF441-202 - 649 1.9e-16 59.6 140.6 11 18 0.0023 3 8.0 2.1 2 24 431 453 431 454 0.87 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF441-202 - 649 1.9e-16 59.6 140.6 12 18 9.6e-05 0.12 12.4 0.5 2 13 459 470 459 480 0.92 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF441-202 - 649 1.9e-16 59.6 140.6 13 18 0.0013 1.6 8.8 0.7 2 13 487 498 487 499 0.96 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF441-202 - 649 1.9e-16 59.6 140.6 14 18 0.0014 1.8 8.7 0.5 2 24 515 537 515 539 0.95 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF441-202 - 649 1.9e-16 59.6 140.6 15 18 0.0015 2 8.5 0.4 2 11 543 552 543 565 0.92 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF441-202 - 649 1.9e-16 59.6 140.6 16 18 0.00093 1.2 9.2 1.4 2 12 571 581 571 582 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF441-202 - 649 1.9e-16 59.6 140.6 17 18 0.057 73 3.5 4.5 2 12 599 609 599 622 0.86 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF441-202 - 649 1.9e-16 59.6 140.6 18 18 0.044 56 3.9 4.2 2 12 627 637 627 645 0.93 C2H2-type zinc finger zf-C2H2_jaz PF12171.8 27 ZNF441-202 - 649 4.4e-11 42.8 108.8 1 17 1.5 1.9e+03 -0.7 0.6 4 21 127 143 125 144 0.71 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF441-202 - 649 4.4e-11 42.8 108.8 2 17 2.1 2.7e+03 -1.2 0.4 4 12 210 218 207 218 0.84 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF441-202 - 649 4.4e-11 42.8 108.8 3 17 0.031 40 4.6 0.7 2 21 236 255 235 256 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF441-202 - 649 4.4e-11 42.8 108.8 4 17 3.2e-05 0.041 14.2 0.1 2 24 264 286 263 286 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF441-202 - 649 4.4e-11 42.8 108.8 5 17 0.0057 7.3 7.0 0.8 2 21 292 311 291 314 0.84 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF441-202 - 649 4.4e-11 42.8 108.8 6 17 0.0026 3.3 8.1 0.4 2 23 320 341 319 342 0.90 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF441-202 - 649 4.4e-11 42.8 108.8 7 17 0.37 4.7e+02 1.2 0.8 6 24 351 369 350 369 0.89 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF441-202 - 649 4.4e-11 42.8 108.8 8 17 0.48 6.2e+02 0.9 0.9 2 12 375 385 374 385 0.89 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF441-202 - 649 4.4e-11 42.8 108.8 9 17 0.00023 0.3 11.4 1.0 2 24 403 425 402 425 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF441-202 - 649 4.4e-11 42.8 108.8 10 17 0.032 42 4.6 0.3 2 21 431 450 430 451 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF441-202 - 649 4.4e-11 42.8 108.8 11 17 4.9e-06 0.0063 16.8 0.1 2 22 459 479 458 479 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF441-202 - 649 4.4e-11 42.8 108.8 12 17 2e-05 0.026 14.8 0.2 2 24 487 509 486 509 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF441-202 - 649 4.4e-11 42.8 108.8 13 17 0.12 1.6e+02 2.7 0.1 4 23 517 536 515 537 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF441-202 - 649 4.4e-11 42.8 108.8 14 17 0.00069 0.89 9.9 0.1 2 24 543 565 542 565 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF441-202 - 649 4.4e-11 42.8 108.8 15 17 0.001 1.3 9.4 0.2 2 22 571 591 570 591 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF441-202 - 649 4.4e-11 42.8 108.8 16 17 0.0014 1.8 8.9 2.9 2 24 599 621 598 622 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF441-202 - 649 4.4e-11 42.8 108.8 17 17 2.4 3e+03 -1.3 2.9 2 21 627 646 626 648 0.85 Zinc-finger double-stranded RNA-binding C1_1 PF00130.22 53 ZNF441-202 - 649 4.7e-07 29.6 88.8 1 15 1.4 1.8e+03 -1.1 1.1 24 34 120 130 99 135 0.62 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF441-202 - 649 4.7e-07 29.6 88.8 2 15 0.11 1.4e+02 2.4 0.1 5 23 146 164 142 175 0.71 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF441-202 - 649 4.7e-07 29.6 88.8 3 15 0.006 7.7 6.5 7.2 9 37 205 244 198 252 0.86 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF441-202 - 649 4.7e-07 29.6 88.8 4 15 0.0011 1.4 8.9 2.5 1 36 254 299 254 304 0.86 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF441-202 - 649 4.7e-07 29.6 88.8 5 15 0.041 52 3.8 0.6 8 22 288 302 280 312 0.72 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF441-202 - 649 4.7e-07 29.6 88.8 6 15 0.0038 4.9 7.1 0.8 1 32 310 351 310 356 0.71 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF441-202 - 649 4.7e-07 29.6 88.8 7 15 0.023 29 4.6 7.0 9 36 372 410 362 412 0.83 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF441-202 - 649 4.7e-07 29.6 88.8 8 15 0.0019 2.4 8.1 2.0 9 35 400 437 393 439 0.82 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF441-202 - 649 4.7e-07 29.6 88.8 9 15 0.015 19 5.3 0.3 7 27 426 447 420 448 0.78 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF441-202 - 649 4.7e-07 29.6 88.8 10 15 0.00035 0.45 10.4 1.7 1 35 449 493 449 496 0.86 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF441-202 - 649 4.7e-07 29.6 88.8 11 15 0.0022 2.8 7.9 0.5 9 35 484 521 477 524 0.83 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF441-202 - 649 4.7e-07 29.6 88.8 12 15 0.2 2.6e+02 1.6 0.0 9 21 512 524 504 531 0.73 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF441-202 - 649 4.7e-07 29.6 88.8 13 15 0.00028 0.36 10.7 0.4 1 37 533 579 533 584 0.85 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF441-202 - 649 4.7e-07 29.6 88.8 14 15 0.00059 0.75 9.7 0.7 9 39 568 609 561 609 0.84 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF441-202 - 649 4.7e-07 29.6 88.8 15 15 0.0003 0.38 10.7 5.9 4 39 592 637 588 647 0.83 Phorbol esters/diacylglycerol binding domain (C1 domain) # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF441-202.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF441-202.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF441-202.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF441-202.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF441-202.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:06:34 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- KRAB PF01352.27 42 ZNF441-203 - 93 1.9e-21 75.4 0.0 1 1 2e-25 3.7e-21 74.5 0.0 1 42 3 44 3 44 0.97 KRAB box # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF441-203.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF441-203.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF441-203.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF441-203.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF441-203.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:06:34 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF44-201.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF44-201.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF44-201.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF44-201.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF44-201.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:06:34 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZNF44-202 - 615 1.2e-106 344.9 141.1 1 17 2.5e-06 0.0025 18.2 4.8 9 26 163 180 152 180 0.87 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF44-202 - 615 1.2e-106 344.9 141.1 2 17 1.3e-07 0.00012 22.3 0.0 1 24 183 206 183 207 0.97 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF44-202 - 615 1.2e-106 344.9 141.1 3 17 4.5e-11 4.5e-08 33.2 1.7 2 24 212 234 212 235 0.97 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF44-202 - 615 1.2e-106 344.9 141.1 4 17 9.5e-11 9.5e-08 32.1 1.8 2 24 240 262 239 263 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF44-202 - 615 1.2e-106 344.9 141.1 5 17 2.5e-11 2.5e-08 34.0 2.2 2 25 268 291 267 291 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF44-202 - 615 1.2e-106 344.9 141.1 6 17 7.5e-11 7.5e-08 32.5 1.8 1 24 295 318 295 319 0.97 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF44-202 - 615 1.2e-106 344.9 141.1 7 17 2.5e-08 2.5e-05 24.5 0.3 2 24 324 346 323 347 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF44-202 - 615 1.2e-106 344.9 141.1 8 17 1.8e-05 0.018 15.5 1.5 5 22 355 372 353 376 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF44-202 - 615 1.2e-106 344.9 141.1 9 17 8.6e-09 8.6e-06 26.0 0.4 2 25 380 403 379 404 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF44-202 - 615 1.2e-106 344.9 141.1 10 17 8.6e-12 8.6e-09 35.4 2.5 2 25 408 431 408 432 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF44-202 - 615 1.2e-106 344.9 141.1 11 17 1.5e-06 0.0015 18.9 1.0 1 24 435 457 435 459 0.89 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF44-202 - 615 1.2e-106 344.9 141.1 12 17 2.2e-07 0.00022 21.5 0.8 2 26 463 487 462 487 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF44-202 - 615 1.2e-106 344.9 141.1 13 17 1.3e-07 0.00013 22.3 1.0 4 25 493 514 493 515 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF44-202 - 615 1.2e-106 344.9 141.1 14 17 2.7e-09 2.7e-06 27.5 3.6 2 24 519 541 518 542 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF44-202 - 615 1.2e-106 344.9 141.1 15 17 3.3e-11 3.3e-08 33.6 2.4 2 25 547 570 547 571 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF44-202 - 615 1.2e-106 344.9 141.1 16 17 1.1e-10 1.1e-07 32.0 3.9 3 26 576 599 575 599 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF44-202 - 615 1.2e-106 344.9 141.1 17 17 0.98 9.7e+02 0.5 0.7 2 9 603 610 602 610 0.90 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZNF44-202 - 615 8.3e-65 211.8 138.8 1 17 6.3 6.3e+03 -2.0 0.1 5 17 145 157 143 158 0.77 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF44-202 - 615 8.3e-65 211.8 138.8 2 17 7.5e-09 7.4e-06 26.1 0.1 1 20 169 188 169 190 0.95 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF44-202 - 615 8.3e-65 211.8 138.8 3 17 7.1e-06 0.007 16.8 0.4 1 23 197 219 197 219 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF44-202 - 615 8.3e-65 211.8 138.8 4 17 1.7e-05 0.017 15.6 0.9 1 23 225 247 225 247 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF44-202 - 615 8.3e-65 211.8 138.8 5 17 6.3e-07 0.00063 20.1 1.5 1 23 253 275 253 275 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF44-202 - 615 8.3e-65 211.8 138.8 6 17 8.3e-08 8.3e-05 22.8 0.3 1 23 281 303 281 303 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF44-202 - 615 8.3e-65 211.8 138.8 7 17 6.8e-07 0.00068 20.0 4.7 1 23 309 331 309 331 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF44-202 - 615 8.3e-65 211.8 138.8 8 17 0.00045 0.45 11.1 0.3 1 23 337 359 337 359 0.92 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF44-202 - 615 8.3e-65 211.8 138.8 9 17 1.5e-05 0.015 15.7 3.2 1 23 365 387 365 387 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF44-202 - 615 8.3e-65 211.8 138.8 10 17 5.4e-07 0.00054 20.3 1.6 1 23 393 415 393 415 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF44-202 - 615 8.3e-65 211.8 138.8 11 17 2.3e-08 2.3e-05 24.6 1.6 1 23 421 443 421 443 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF44-202 - 615 8.3e-65 211.8 138.8 12 17 0.001 1 9.9 1.2 5 23 452 470 449 470 0.93 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF44-202 - 615 8.3e-65 211.8 138.8 13 17 3.7e-06 0.0037 17.7 4.7 1 23 476 498 476 498 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF44-202 - 615 8.3e-65 211.8 138.8 14 17 2.1e-08 2.1e-05 24.7 1.3 1 23 504 526 504 526 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF44-202 - 615 8.3e-65 211.8 138.8 15 17 0.00029 0.29 11.7 1.4 1 23 532 554 532 554 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF44-202 - 615 8.3e-65 211.8 138.8 16 17 6.2e-05 0.062 13.8 6.0 1 23 560 582 560 582 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF44-202 - 615 8.3e-65 211.8 138.8 17 17 1.5e-08 1.5e-05 25.1 1.8 1 23 588 610 588 610 0.99 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZNF44-202 - 615 1.7e-51 168.3 136.4 1 16 8.7e-07 0.00087 19.9 0.1 3 20 171 188 169 191 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF44-202 - 615 1.7e-51 168.3 136.4 2 16 0.00018 0.18 12.7 0.6 1 23 197 219 197 220 0.91 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF44-202 - 615 1.7e-51 168.3 136.4 3 16 2e-05 0.02 15.7 1.0 1 23 225 247 225 248 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF44-202 - 615 1.7e-51 168.3 136.4 4 16 9.8e-07 0.00098 19.8 1.2 1 23 253 275 253 276 0.97 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF44-202 - 615 1.7e-51 168.3 136.4 5 16 2.9e-06 0.0028 18.3 0.4 1 23 281 303 281 304 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF44-202 - 615 1.7e-51 168.3 136.4 6 16 2.6e-05 0.026 15.3 4.0 1 23 309 331 309 332 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF44-202 - 615 1.7e-51 168.3 136.4 7 16 0.0033 3.3 8.8 0.3 1 23 337 359 337 360 0.83 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF44-202 - 615 1.7e-51 168.3 136.4 8 16 7.9e-05 0.079 13.8 2.5 1 23 365 387 365 388 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF44-202 - 615 1.7e-51 168.3 136.4 9 16 3.6e-06 0.0036 18.0 1.4 1 23 393 415 393 416 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF44-202 - 615 1.7e-51 168.3 136.4 10 16 4.2e-07 0.00042 20.9 1.2 1 23 421 443 421 444 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF44-202 - 615 1.7e-51 168.3 136.4 11 16 0.0021 2 9.4 1.6 1 23 449 470 449 471 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF44-202 - 615 1.7e-51 168.3 136.4 12 16 1.1e-05 0.011 16.5 4.5 1 23 476 498 476 499 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF44-202 - 615 1.7e-51 168.3 136.4 13 16 2e-06 0.002 18.8 1.0 1 23 504 526 504 527 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF44-202 - 615 1.7e-51 168.3 136.4 14 16 0.00081 0.81 10.7 1.7 1 23 532 554 532 555 0.89 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF44-202 - 615 1.7e-51 168.3 136.4 15 16 0.00011 0.11 13.4 5.2 1 23 560 582 560 583 0.82 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF44-202 - 615 1.7e-51 168.3 136.4 16 16 5.4e-07 0.00054 20.6 1.5 1 23 588 610 588 611 0.97 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF44-202 - 615 1.7e-21 75.7 135.7 1 16 1.3e-05 0.013 15.5 0.1 2 21 169 188 169 189 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF44-202 - 615 1.7e-21 75.7 135.7 2 16 0.51 5.1e+02 0.8 3.3 2 11 197 206 197 222 0.83 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF44-202 - 615 1.7e-21 75.7 135.7 3 16 0.00058 0.58 10.2 1.3 2 12 225 235 225 239 0.90 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF44-202 - 615 1.7e-21 75.7 135.7 4 16 0.00033 0.33 11.0 1.0 2 14 253 265 253 276 0.84 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF44-202 - 615 1.7e-21 75.7 135.7 5 16 0.00096 0.95 9.5 0.4 2 12 281 291 281 303 0.85 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF44-202 - 615 1.7e-21 75.7 135.7 6 16 0.018 18 5.5 1.1 2 11 309 318 309 331 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF44-202 - 615 1.7e-21 75.7 135.7 7 16 0.0031 3.1 7.9 0.5 2 11 337 346 337 347 0.95 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF44-202 - 615 1.7e-21 75.7 135.7 8 16 0.007 7 6.8 0.3 2 11 365 374 365 387 0.87 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF44-202 - 615 1.7e-21 75.7 135.7 9 16 0.0007 0.7 10.0 0.6 2 13 393 404 393 415 0.92 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF44-202 - 615 1.7e-21 75.7 135.7 10 16 6.9e-07 0.00069 19.6 2.2 2 24 421 443 421 446 0.95 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF44-202 - 615 1.7e-21 75.7 135.7 11 16 4.5 4.5e+03 -2.2 1.2 5 12 452 458 449 472 0.71 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF44-202 - 615 1.7e-21 75.7 135.7 12 16 0.0003 0.3 11.1 5.3 2 16 476 490 476 501 0.78 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF44-202 - 615 1.7e-21 75.7 135.7 13 16 4.1e-06 0.0041 17.1 1.3 2 25 504 527 503 529 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF44-202 - 615 1.7e-21 75.7 135.7 14 16 0.048 48 4.1 1.3 2 11 532 541 532 541 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF44-202 - 615 1.7e-21 75.7 135.7 15 16 0.012 12 6.0 1.3 2 12 560 570 560 573 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF44-202 - 615 1.7e-21 75.7 135.7 16 16 3e-09 2.9e-06 27.1 2.4 2 26 588 612 588 613 0.98 C2H2-type zinc finger zf-C2H2_jaz PF12171.8 27 ZNF44-202 - 615 2.8e-21 75.3 84.7 1 16 5.3e-05 0.053 13.8 0.0 2 21 169 188 168 189 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF44-202 - 615 2.8e-21 75.3 84.7 2 16 0.0073 7.3 7.0 0.0 2 24 197 219 196 219 0.89 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF44-202 - 615 2.8e-21 75.3 84.7 3 16 0.16 1.6e+02 2.7 0.4 2 11 225 234 224 245 0.77 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF44-202 - 615 2.8e-21 75.3 84.7 4 16 0.0013 1.3 9.4 0.5 2 24 253 275 252 275 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF44-202 - 615 2.8e-21 75.3 84.7 5 16 0.041 41 4.6 0.0 2 22 281 301 280 301 0.88 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF44-202 - 615 2.8e-21 75.3 84.7 6 16 1 1e+03 0.2 1.2 2 20 309 327 308 328 0.76 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF44-202 - 615 2.8e-21 75.3 84.7 7 16 0.054 54 4.2 0.2 2 11 337 346 336 347 0.90 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF44-202 - 615 2.8e-21 75.3 84.7 8 16 0.06 60 4.1 0.1 2 21 365 384 364 384 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF44-202 - 615 2.8e-21 75.3 84.7 9 16 2.6e-06 0.0026 18.0 0.1 2 24 393 415 392 415 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF44-202 - 615 2.8e-21 75.3 84.7 10 16 1.8e-05 0.018 15.3 0.3 2 24 421 443 420 443 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF44-202 - 615 2.8e-21 75.3 84.7 11 16 0.17 1.7e+02 2.7 0.4 7 24 453 470 453 471 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF44-202 - 615 2.8e-21 75.3 84.7 12 16 0.073 72 3.8 3.4 2 24 476 498 475 499 0.82 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF44-202 - 615 2.8e-21 75.3 84.7 13 16 0.0009 0.89 9.9 1.1 2 24 504 526 503 526 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF44-202 - 615 2.8e-21 75.3 84.7 14 16 0.037 37 4.8 0.2 2 24 532 554 531 554 0.87 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF44-202 - 615 2.8e-21 75.3 84.7 15 16 0.0015 1.5 9.2 2.5 2 24 560 582 559 582 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF44-202 - 615 2.8e-21 75.3 84.7 16 16 2.6e-05 0.026 14.8 0.7 2 24 588 610 587 611 0.94 Zinc-finger double-stranded RNA-binding KRAB PF01352.27 42 ZNF44-202 - 615 5.7e-21 73.9 0.0 1 1 9.4e-24 9.3e-21 73.2 0.0 1 42 3 44 3 44 0.97 KRAB box zf-C2H2_11 PF16622.5 29 ZNF44-202 - 615 2.2e-08 33.7 84.5 1 15 2.9e-07 0.00029 20.5 0.0 7 25 171 189 169 190 0.94 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF44-202 - 615 2.2e-08 33.7 84.5 2 15 0.38 3.8e+02 1.0 0.1 5 14 197 206 195 215 0.84 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF44-202 - 615 2.2e-08 33.7 84.5 3 15 4.3 4.3e+03 -2.4 0.1 7 14 227 234 225 246 0.59 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF44-202 - 615 2.2e-08 33.7 84.5 4 15 8.1e-06 0.0081 15.9 0.1 5 26 281 302 278 303 0.93 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF44-202 - 615 2.2e-08 33.7 84.5 5 15 0.0021 2 8.2 3.6 7 26 311 330 308 331 0.93 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF44-202 - 615 2.2e-08 33.7 84.5 6 15 1.4 1.4e+03 -0.9 0.1 5 14 337 346 335 353 0.80 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF44-202 - 615 2.2e-08 33.7 84.5 7 15 0.073 73 3.3 2.5 6 25 366 385 363 387 0.90 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF44-202 - 615 2.2e-08 33.7 84.5 8 15 0.0067 6.6 6.6 0.0 5 23 393 411 390 414 0.91 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF44-202 - 615 2.2e-08 33.7 84.5 9 15 0.0013 1.3 8.9 0.3 6 23 422 439 419 441 0.93 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF44-202 - 615 2.2e-08 33.7 84.5 10 15 5.5 5.5e+03 -2.8 0.5 8 15 451 458 450 466 0.75 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF44-202 - 615 2.2e-08 33.7 84.5 11 15 0.022 22 4.9 0.5 6 17 477 488 473 496 0.80 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF44-202 - 615 2.2e-08 33.7 84.5 12 15 0.097 97 2.9 0.2 2 18 501 517 500 524 0.76 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF44-202 - 615 2.2e-08 33.7 84.5 13 15 5.3 5.2e+03 -2.7 0.1 7 11 534 538 532 550 0.66 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF44-202 - 615 2.2e-08 33.7 84.5 14 15 0.35 3.5e+02 1.1 1.3 6 15 561 570 559 576 0.86 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF44-202 - 615 2.2e-08 33.7 84.5 15 15 4.2e-05 0.042 13.6 0.5 6 24 589 607 586 610 0.91 zinc-finger C2H2-type Zn-ribbon_8 PF09723.10 40 ZNF44-202 - 615 4.1e-08 33.2 97.4 1 17 3.6 3.6e+03 -1.8 0.1 10 19 79 88 64 107 0.61 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF44-202 - 615 4.1e-08 33.2 97.4 2 17 0.0079 7.8 6.7 0.1 6 16 169 179 166 191 0.87 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF44-202 - 615 4.1e-08 33.2 97.4 3 17 0.0012 1.2 9.3 2.5 6 34 197 232 196 237 0.80 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF44-202 - 615 4.1e-08 33.2 97.4 4 17 0.075 75 3.6 6.1 6 34 225 260 224 264 0.83 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF44-202 - 615 4.1e-08 33.2 97.4 5 17 0.19 1.9e+02 2.3 0.7 6 15 253 262 252 268 0.89 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF44-202 - 615 4.1e-08 33.2 97.4 6 17 1.7e-05 0.017 15.2 3.0 6 34 281 316 280 319 0.87 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF44-202 - 615 4.1e-08 33.2 97.4 7 17 0.003 3 8.0 2.8 6 34 309 344 308 347 0.73 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF44-202 - 615 4.1e-08 33.2 97.4 8 17 0.0012 1.2 9.3 1.4 7 34 338 372 337 378 0.82 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF44-202 - 615 4.1e-08 33.2 97.4 9 17 0.0022 2.2 8.5 1.5 6 34 365 400 364 402 0.81 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF44-202 - 615 4.1e-08 33.2 97.4 10 17 0.00077 0.77 9.9 3.4 7 36 394 430 392 432 0.74 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF44-202 - 615 4.1e-08 33.2 97.4 11 17 0.0036 3.6 7.8 0.4 6 20 421 435 420 444 0.76 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF44-202 - 615 4.1e-08 33.2 97.4 12 17 0.023 23 5.2 5.8 6 34 449 483 448 487 0.66 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF44-202 - 615 4.1e-08 33.2 97.4 13 17 0.0047 4.6 7.4 7.7 6 38 476 515 475 516 0.78 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF44-202 - 615 4.1e-08 33.2 97.4 14 17 0.0074 7.4 6.8 5.6 6 34 504 539 502 542 0.74 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF44-202 - 615 4.1e-08 33.2 97.4 15 17 0.011 11 6.3 6.0 6 38 532 571 531 572 0.81 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF44-202 - 615 4.1e-08 33.2 97.4 16 17 0.013 13 6.0 1.5 6 18 560 572 559 582 0.78 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF44-202 - 615 4.1e-08 33.2 97.4 17 17 0.00032 0.32 11.2 0.2 6 24 588 606 587 610 0.85 Zinc ribbon domain # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF44-202.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF44-202.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF44-202.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF44-202.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF44-202.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:06:35 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZNF44-203 - 663 5.1e-106 342.8 141.1 1 17 2.8e-06 0.0028 18.0 4.8 9 26 211 228 200 228 0.87 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF44-203 - 663 5.1e-106 342.8 141.1 2 17 1.4e-07 0.00014 22.2 0.0 1 24 231 254 231 255 0.97 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF44-203 - 663 5.1e-106 342.8 141.1 3 17 4.9e-11 4.9e-08 33.0 1.7 2 24 260 282 260 283 0.97 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF44-203 - 663 5.1e-106 342.8 141.1 4 17 1e-10 1e-07 32.0 1.8 2 24 288 310 287 311 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF44-203 - 663 5.1e-106 342.8 141.1 5 17 2.8e-11 2.8e-08 33.8 2.2 2 25 316 339 315 339 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF44-203 - 663 5.1e-106 342.8 141.1 6 17 8.2e-11 8.2e-08 32.3 1.8 1 24 343 366 343 367 0.97 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF44-203 - 663 5.1e-106 342.8 141.1 7 17 2.7e-08 2.7e-05 24.4 0.3 2 24 372 394 371 395 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF44-203 - 663 5.1e-106 342.8 141.1 8 17 2e-05 0.02 15.3 1.5 5 22 403 420 401 424 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF44-203 - 663 5.1e-106 342.8 141.1 9 17 9.4e-09 9.4e-06 25.8 0.4 2 25 428 451 427 452 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF44-203 - 663 5.1e-106 342.8 141.1 10 17 9.4e-12 9.4e-09 35.3 2.5 2 25 456 479 456 480 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF44-203 - 663 5.1e-106 342.8 141.1 11 17 1.6e-06 0.0016 18.7 1.0 1 24 483 505 483 507 0.89 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF44-203 - 663 5.1e-106 342.8 141.1 12 17 2.5e-07 0.00024 21.4 0.8 2 26 511 535 510 535 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF44-203 - 663 5.1e-106 342.8 141.1 13 17 1.4e-07 0.00014 22.1 1.0 4 25 541 562 541 563 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF44-203 - 663 5.1e-106 342.8 141.1 14 17 3e-09 3e-06 27.4 3.6 2 24 567 589 566 590 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF44-203 - 663 5.1e-106 342.8 141.1 15 17 3.6e-11 3.6e-08 33.5 2.4 2 25 595 618 595 619 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF44-203 - 663 5.1e-106 342.8 141.1 16 17 1.2e-10 1.2e-07 31.9 3.9 3 26 624 647 623 647 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF44-203 - 663 5.1e-106 342.8 141.1 17 17 1.1 1.1e+03 0.4 0.7 2 9 651 658 650 658 0.90 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZNF44-203 - 663 3.5e-64 209.8 138.8 1 17 6.8 6.8e+03 -2.1 0.1 5 17 193 205 191 206 0.77 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF44-203 - 663 3.5e-64 209.8 138.8 2 17 8.1e-09 8.1e-06 26.0 0.1 1 20 217 236 217 238 0.95 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF44-203 - 663 3.5e-64 209.8 138.8 3 17 7.7e-06 0.0077 16.6 0.4 1 23 245 267 245 267 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF44-203 - 663 3.5e-64 209.8 138.8 4 17 1.9e-05 0.019 15.4 0.9 1 23 273 295 273 295 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF44-203 - 663 3.5e-64 209.8 138.8 5 17 6.9e-07 0.00069 19.9 1.5 1 23 301 323 301 323 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF44-203 - 663 3.5e-64 209.8 138.8 6 17 9e-08 9e-05 22.7 0.3 1 23 329 351 329 351 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF44-203 - 663 3.5e-64 209.8 138.8 7 17 7.5e-07 0.00074 19.8 4.7 1 23 357 379 357 379 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF44-203 - 663 3.5e-64 209.8 138.8 8 17 0.00049 0.49 11.0 0.3 1 23 385 407 385 407 0.92 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF44-203 - 663 3.5e-64 209.8 138.8 9 17 1.6e-05 0.016 15.6 3.2 1 23 413 435 413 435 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF44-203 - 663 3.5e-64 209.8 138.8 10 17 5.9e-07 0.00058 20.2 1.6 1 23 441 463 441 463 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF44-203 - 663 3.5e-64 209.8 138.8 11 17 2.5e-08 2.5e-05 24.5 1.6 1 23 469 491 469 491 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF44-203 - 663 3.5e-64 209.8 138.8 12 17 0.0011 1.1 9.8 1.2 5 23 500 518 497 518 0.93 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF44-203 - 663 3.5e-64 209.8 138.8 13 17 4e-06 0.004 17.5 4.7 1 23 524 546 524 546 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF44-203 - 663 3.5e-64 209.8 138.8 14 17 2.3e-08 2.2e-05 24.6 1.3 1 23 552 574 552 574 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF44-203 - 663 3.5e-64 209.8 138.8 15 17 0.00032 0.32 11.5 1.4 1 23 580 602 580 602 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF44-203 - 663 3.5e-64 209.8 138.8 16 17 6.8e-05 0.067 13.7 6.0 1 23 608 630 608 630 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF44-203 - 663 3.5e-64 209.8 138.8 17 17 1.7e-08 1.7e-05 25.0 1.8 1 23 636 658 636 658 0.99 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZNF44-203 - 663 6.9e-51 166.5 136.4 1 16 9.5e-07 0.00095 19.8 0.1 3 20 219 236 217 239 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF44-203 - 663 6.9e-51 166.5 136.4 2 16 0.0002 0.2 12.6 0.6 1 23 245 267 245 268 0.91 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF44-203 - 663 6.9e-51 166.5 136.4 3 16 2.2e-05 0.021 15.6 1.0 1 23 273 295 273 296 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF44-203 - 663 6.9e-51 166.5 136.4 4 16 1.1e-06 0.0011 19.7 1.2 1 23 301 323 301 324 0.97 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF44-203 - 663 6.9e-51 166.5 136.4 5 16 3.1e-06 0.0031 18.2 0.4 1 23 329 351 329 352 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF44-203 - 663 6.9e-51 166.5 136.4 6 16 2.9e-05 0.028 15.2 4.0 1 23 357 379 357 380 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF44-203 - 663 6.9e-51 166.5 136.4 7 16 0.0036 3.6 8.7 0.3 1 23 385 407 385 408 0.83 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF44-203 - 663 6.9e-51 166.5 136.4 8 16 8.6e-05 0.086 13.7 2.5 1 23 413 435 413 436 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF44-203 - 663 6.9e-51 166.5 136.4 9 16 3.9e-06 0.0039 17.9 1.4 1 23 441 463 441 464 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF44-203 - 663 6.9e-51 166.5 136.4 10 16 4.6e-07 0.00045 20.8 1.2 1 23 469 491 469 492 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF44-203 - 663 6.9e-51 166.5 136.4 11 16 0.0022 2.2 9.3 1.6 1 23 497 518 497 519 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF44-203 - 663 6.9e-51 166.5 136.4 12 16 1.2e-05 0.012 16.4 4.5 1 23 524 546 524 547 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF44-203 - 663 6.9e-51 166.5 136.4 13 16 2.2e-06 0.0022 18.7 1.0 1 23 552 574 552 575 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF44-203 - 663 6.9e-51 166.5 136.4 14 16 0.00089 0.88 10.6 1.7 1 23 580 602 580 603 0.89 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF44-203 - 663 6.9e-51 166.5 136.4 15 16 0.00012 0.12 13.3 5.2 1 23 608 630 608 631 0.82 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF44-203 - 663 6.9e-51 166.5 136.4 16 16 5.9e-07 0.00059 20.5 1.5 1 23 636 658 636 659 0.97 C2H2-type zinc finger KRAB PF01352.27 42 ZNF44-203 - 663 6.1e-21 73.8 0.0 1 1 1e-23 1e-20 73.1 0.0 1 42 51 92 51 92 0.97 KRAB box zf-C2H2_6 PF13912.6 27 ZNF44-203 - 663 7e-21 73.7 135.8 1 16 1.4e-05 0.014 15.3 0.1 2 21 217 236 217 237 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF44-203 - 663 7e-21 73.7 135.8 2 16 0.57 5.7e+02 0.7 3.3 2 11 245 254 245 270 0.83 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF44-203 - 663 7e-21 73.7 135.8 3 16 0.00063 0.63 10.1 1.3 2 12 273 283 273 287 0.90 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF44-203 - 663 7e-21 73.7 135.8 4 16 0.00036 0.36 10.9 1.0 2 14 301 313 301 324 0.84 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF44-203 - 663 7e-21 73.7 135.8 5 16 0.001 1 9.4 0.4 2 12 329 339 329 351 0.85 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF44-203 - 663 7e-21 73.7 135.8 6 16 0.02 19 5.4 1.1 2 11 357 366 357 379 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF44-203 - 663 7e-21 73.7 135.8 7 16 0.0034 3.4 7.8 0.5 2 11 385 394 385 395 0.95 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF44-203 - 663 7e-21 73.7 135.8 8 16 0.0076 7.6 6.7 0.3 2 11 413 422 413 435 0.87 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF44-203 - 663 7e-21 73.7 135.8 9 16 0.00076 0.76 9.8 0.6 2 13 441 452 441 463 0.92 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF44-203 - 663 7e-21 73.7 135.8 10 16 7.5e-07 0.00075 19.4 2.2 2 24 469 491 469 494 0.95 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF44-203 - 663 7e-21 73.7 135.8 11 16 4.9 4.9e+03 -2.3 1.2 5 12 500 506 497 520 0.71 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF44-203 - 663 7e-21 73.7 135.8 12 16 0.00033 0.33 11.0 5.3 2 16 524 538 524 549 0.78 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF44-203 - 663 7e-21 73.7 135.8 13 16 4.5e-06 0.0045 17.0 1.3 2 25 552 575 551 577 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF44-203 - 663 7e-21 73.7 135.8 14 16 0.052 52 4.0 1.3 2 11 580 589 580 589 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF44-203 - 663 7e-21 73.7 135.8 15 16 0.014 14 5.9 1.3 2 12 608 618 608 621 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF44-203 - 663 7e-21 73.7 135.8 16 16 3.2e-09 3.2e-06 27.0 2.4 2 26 636 660 636 661 0.98 C2H2-type zinc finger zf-C2H2_jaz PF12171.8 27 ZNF44-203 - 663 1.1e-20 73.4 84.7 1 16 5.8e-05 0.058 13.7 0.0 2 21 217 236 216 237 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF44-203 - 663 1.1e-20 73.4 84.7 2 16 0.0079 7.9 6.9 0.0 2 24 245 267 244 267 0.89 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF44-203 - 663 1.1e-20 73.4 84.7 3 16 0.18 1.8e+02 2.6 0.4 2 11 273 282 272 293 0.78 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF44-203 - 663 1.1e-20 73.4 84.7 4 16 0.0014 1.4 9.3 0.5 2 24 301 323 300 323 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF44-203 - 663 1.1e-20 73.4 84.7 5 16 0.045 45 4.5 0.0 2 22 329 349 328 349 0.88 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF44-203 - 663 1.1e-20 73.4 84.7 6 16 1.1 1.1e+03 0.0 1.2 2 20 357 375 356 376 0.76 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF44-203 - 663 1.1e-20 73.4 84.7 7 16 0.059 59 4.1 0.2 2 11 385 394 384 395 0.90 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF44-203 - 663 1.1e-20 73.4 84.7 8 16 0.065 65 4.0 0.1 2 21 413 432 412 432 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF44-203 - 663 1.1e-20 73.4 84.7 9 16 2.9e-06 0.0029 17.9 0.1 2 24 441 463 440 463 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF44-203 - 663 1.1e-20 73.4 84.7 10 16 2e-05 0.02 15.2 0.3 2 24 469 491 468 491 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF44-203 - 663 1.1e-20 73.4 84.7 11 16 0.18 1.8e+02 2.5 0.4 7 24 501 518 501 519 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF44-203 - 663 1.1e-20 73.4 84.7 12 16 0.079 79 3.7 3.4 2 24 524 546 523 547 0.82 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF44-203 - 663 1.1e-20 73.4 84.7 13 16 0.00098 0.97 9.8 1.1 2 24 552 574 551 574 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF44-203 - 663 1.1e-20 73.4 84.7 14 16 0.04 40 4.6 0.2 2 24 580 602 579 602 0.87 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF44-203 - 663 1.1e-20 73.4 84.7 15 16 0.0016 1.6 9.1 2.5 2 24 608 630 607 630 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF44-203 - 663 1.1e-20 73.4 84.7 16 16 2.8e-05 0.028 14.7 0.7 2 24 636 658 635 659 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_11 PF16622.5 29 ZNF44-203 - 663 6.4e-08 32.2 84.5 1 15 3.1e-07 0.00031 20.4 0.0 7 25 219 237 217 238 0.94 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF44-203 - 663 6.4e-08 32.2 84.5 2 15 0.41 4.1e+02 0.9 0.1 5 14 245 254 243 263 0.84 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF44-203 - 663 6.4e-08 32.2 84.5 3 15 4.7 4.6e+03 -2.5 0.1 7 14 275 282 273 294 0.59 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF44-203 - 663 6.4e-08 32.2 84.5 4 15 8.8e-06 0.0088 15.8 0.1 5 26 329 350 326 351 0.93 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF44-203 - 663 6.4e-08 32.2 84.5 5 15 0.0022 2.2 8.1 3.6 7 26 359 378 356 379 0.93 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF44-203 - 663 6.4e-08 32.2 84.5 6 15 1.6 1.6e+03 -1.0 0.1 5 14 385 394 383 401 0.80 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF44-203 - 663 6.4e-08 32.2 84.5 7 15 0.079 79 3.1 2.5 6 25 414 433 411 435 0.90 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF44-203 - 663 6.4e-08 32.2 84.5 8 15 0.0073 7.2 6.5 0.0 5 23 441 459 438 462 0.91 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF44-203 - 663 6.4e-08 32.2 84.5 9 15 0.0014 1.4 8.7 0.3 6 23 470 487 467 489 0.93 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF44-203 - 663 6.4e-08 32.2 84.5 10 15 6 6e+03 -2.9 0.5 8 15 499 506 498 514 0.75 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF44-203 - 663 6.4e-08 32.2 84.5 11 15 0.024 24 4.8 0.5 6 17 525 536 521 544 0.80 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF44-203 - 663 6.4e-08 32.2 84.5 12 15 0.11 1.1e+02 2.7 0.2 2 18 549 565 548 572 0.76 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF44-203 - 663 6.4e-08 32.2 84.5 13 15 5.7 5.7e+03 -2.8 0.1 7 11 582 586 580 598 0.66 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF44-203 - 663 6.4e-08 32.2 84.5 14 15 0.38 3.8e+02 0.9 1.3 6 15 609 618 607 624 0.86 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF44-203 - 663 6.4e-08 32.2 84.5 15 15 4.6e-05 0.045 13.5 0.5 6 24 637 655 634 658 0.91 zinc-finger C2H2-type Zn-ribbon_8 PF09723.10 40 ZNF44-203 - 663 1.1e-07 31.8 97.3 1 17 4 4e+03 -1.9 0.1 10 19 127 136 112 155 0.61 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF44-203 - 663 1.1e-07 31.8 97.3 2 17 0.0085 8.5 6.6 0.1 6 16 217 227 214 239 0.87 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF44-203 - 663 1.1e-07 31.8 97.3 3 17 0.0018 1.8 8.7 2.8 6 34 245 280 244 283 0.80 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF44-203 - 663 1.1e-07 31.8 97.3 4 17 0.1 1e+02 3.1 6.4 6 34 273 308 271 312 0.84 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF44-203 - 663 1.1e-07 31.8 97.3 5 17 0.21 2.1e+02 2.1 0.7 6 15 301 310 300 316 0.89 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF44-203 - 663 1.1e-07 31.8 97.3 6 17 1.6e-05 0.016 15.3 2.8 6 34 329 364 328 368 0.87 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF44-203 - 663 1.1e-07 31.8 97.3 7 17 0.0034 3.4 7.9 2.8 6 34 357 392 356 395 0.73 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF44-203 - 663 1.1e-07 31.8 97.3 8 17 0.0015 1.5 9.0 1.6 7 34 386 420 384 426 0.82 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF44-203 - 663 1.1e-07 31.8 97.3 9 17 0.0027 2.7 8.2 1.9 6 34 413 448 412 451 0.81 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF44-203 - 663 1.1e-07 31.8 97.3 10 17 0.0012 1.2 9.3 3.9 7 36 442 478 440 480 0.74 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF44-203 - 663 1.1e-07 31.8 97.3 11 17 0.0041 4.1 7.6 0.5 6 20 469 483 468 492 0.76 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF44-203 - 663 1.1e-07 31.8 97.3 12 17 0.032 32 4.7 6.1 6 34 497 531 496 534 0.66 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF44-203 - 663 1.1e-07 31.8 97.3 13 17 0.0049 4.9 7.4 7.6 6 38 524 563 523 564 0.78 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF44-203 - 663 1.1e-07 31.8 97.3 14 17 0.0064 6.4 7.0 5.3 6 34 552 587 550 590 0.74 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF44-203 - 663 1.1e-07 31.8 97.3 15 17 0.0093 9.2 6.5 5.7 6 38 580 619 578 620 0.81 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF44-203 - 663 1.1e-07 31.8 97.3 16 17 0.011 11 6.2 1.2 6 18 608 620 607 630 0.78 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF44-203 - 663 1.1e-07 31.8 97.3 17 17 0.00035 0.34 11.0 0.2 6 24 636 654 635 658 0.85 Zinc ribbon domain # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF44-203.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF44-203.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF44-203.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF44-203.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF44-203.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:06:35 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZNF44-204 - 642 3e-102 330.9 128.6 1 16 2.5e-06 0.0027 18.1 4.8 9 26 211 228 200 228 0.87 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF44-204 - 642 3e-102 330.9 128.6 2 16 1.2e-07 0.00013 22.2 0.0 1 24 231 254 231 255 0.97 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF44-204 - 642 3e-102 330.9 128.6 3 16 4.5e-11 4.7e-08 33.1 1.7 2 24 260 282 260 283 0.97 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF44-204 - 642 3e-102 330.9 128.6 4 16 9.4e-11 1e-07 32.1 1.8 2 24 288 310 287 311 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF44-204 - 642 3e-102 330.9 128.6 5 16 2.5e-11 2.7e-08 33.9 2.2 2 25 316 339 315 339 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF44-204 - 642 3e-102 330.9 128.6 6 16 7.4e-11 7.9e-08 32.4 1.8 1 24 343 366 343 367 0.97 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF44-204 - 642 3e-102 330.9 128.6 7 16 2.5e-08 2.6e-05 24.4 0.3 2 24 372 394 371 395 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF44-204 - 642 3e-102 330.9 128.6 8 16 1.8e-05 0.019 15.4 1.5 5 22 403 420 401 424 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF44-204 - 642 3e-102 330.9 128.6 9 16 8.6e-09 9.1e-06 25.9 0.4 2 25 428 451 427 452 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF44-204 - 642 3e-102 330.9 128.6 10 16 8.6e-12 9e-09 35.4 2.5 2 25 456 479 456 480 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF44-204 - 642 3e-102 330.9 128.6 11 16 1.5e-06 0.0016 18.8 1.0 1 24 483 505 483 507 0.89 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF44-204 - 642 3e-102 330.9 128.6 12 16 2.2e-07 0.00024 21.4 0.8 2 26 511 535 510 535 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF44-204 - 642 3e-102 330.9 128.6 13 16 1.3e-07 0.00013 22.2 1.0 4 25 541 562 541 563 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF44-204 - 642 3e-102 330.9 128.6 14 16 2.7e-09 2.9e-06 27.5 3.6 2 24 567 589 566 590 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF44-204 - 642 3e-102 330.9 128.6 15 16 3.3e-11 3.5e-08 33.5 2.4 2 25 595 618 595 619 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF44-204 - 642 3e-102 330.9 128.6 16 16 0.00011 0.12 12.9 0.4 3 16 624 637 623 637 0.92 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZNF44-204 - 642 2e-58 191.7 129.5 1 16 6.2 6.6e+03 -2.0 0.1 5 17 193 205 191 206 0.77 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF44-204 - 642 2e-58 191.7 129.5 2 16 7.4e-09 7.8e-06 26.1 0.1 1 20 217 236 217 238 0.95 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF44-204 - 642 2e-58 191.7 129.5 3 16 7e-06 0.0074 16.7 0.4 1 23 245 267 245 267 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF44-204 - 642 2e-58 191.7 129.5 4 16 1.7e-05 0.018 15.5 0.9 1 23 273 295 273 295 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF44-204 - 642 2e-58 191.7 129.5 5 16 6.3e-07 0.00066 20.0 1.5 1 23 301 323 301 323 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF44-204 - 642 2e-58 191.7 129.5 6 16 8.2e-08 8.7e-05 22.8 0.3 1 23 329 351 329 351 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF44-204 - 642 2e-58 191.7 129.5 7 16 6.8e-07 0.00072 19.9 4.7 1 23 357 379 357 379 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF44-204 - 642 2e-58 191.7 129.5 8 16 0.00045 0.47 11.0 0.3 1 23 385 407 385 407 0.92 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF44-204 - 642 2e-58 191.7 129.5 9 16 1.5e-05 0.016 15.7 3.2 1 23 413 435 413 435 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF44-204 - 642 2e-58 191.7 129.5 10 16 5.3e-07 0.00056 20.2 1.6 1 23 441 463 441 463 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF44-204 - 642 2e-58 191.7 129.5 11 16 2.3e-08 2.4e-05 24.5 1.6 1 23 469 491 469 491 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF44-204 - 642 2e-58 191.7 129.5 12 16 0.001 1.1 9.9 1.2 5 23 500 518 497 518 0.93 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF44-204 - 642 2e-58 191.7 129.5 13 16 3.7e-06 0.0039 17.6 4.7 1 23 524 546 524 546 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF44-204 - 642 2e-58 191.7 129.5 14 16 2.1e-08 2.2e-05 24.7 1.3 1 23 552 574 552 574 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF44-204 - 642 2e-58 191.7 129.5 15 16 0.00029 0.31 11.6 1.4 1 23 580 602 580 602 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF44-204 - 642 2e-58 191.7 129.5 16 16 6.1e-05 0.065 13.7 6.0 1 23 608 630 608 630 0.98 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZNF44-204 - 642 1.8e-46 152.7 127.5 1 15 8.7e-07 0.00092 19.9 0.1 3 20 219 236 217 239 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF44-204 - 642 1.8e-46 152.7 127.5 2 15 0.00018 0.19 12.6 0.6 1 23 245 267 245 268 0.91 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF44-204 - 642 1.8e-46 152.7 127.5 3 15 2e-05 0.021 15.7 1.0 1 23 273 295 273 296 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF44-204 - 642 1.8e-46 152.7 127.5 4 15 9.7e-07 0.001 19.7 1.2 1 23 301 323 301 324 0.97 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF44-204 - 642 1.8e-46 152.7 127.5 5 15 2.8e-06 0.003 18.3 0.4 1 23 329 351 329 352 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF44-204 - 642 1.8e-46 152.7 127.5 6 15 2.6e-05 0.027 15.3 4.0 1 23 357 379 357 380 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF44-204 - 642 1.8e-46 152.7 127.5 7 15 0.0033 3.5 8.7 0.3 1 23 385 407 385 408 0.83 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF44-204 - 642 1.8e-46 152.7 127.5 8 15 7.9e-05 0.083 13.8 2.5 1 23 413 435 413 436 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF44-204 - 642 1.8e-46 152.7 127.5 9 15 3.6e-06 0.0038 18.0 1.4 1 23 441 463 441 464 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF44-204 - 642 1.8e-46 152.7 127.5 10 15 4.2e-07 0.00044 20.9 1.2 1 23 469 491 469 492 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF44-204 - 642 1.8e-46 152.7 127.5 11 15 0.002 2.2 9.4 1.6 1 23 497 518 497 519 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF44-204 - 642 1.8e-46 152.7 127.5 12 15 1.1e-05 0.012 16.4 4.5 1 23 524 546 524 547 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF44-204 - 642 1.8e-46 152.7 127.5 13 15 2e-06 0.0021 18.7 1.0 1 23 552 574 552 575 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF44-204 - 642 1.8e-46 152.7 127.5 14 15 0.00081 0.85 10.6 1.7 1 23 580 602 580 603 0.89 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF44-204 - 642 1.8e-46 152.7 127.5 15 15 0.00011 0.11 13.3 5.2 1 23 608 630 608 631 0.82 C2H2-type zinc finger KRAB PF01352.27 42 ZNF44-204 - 642 5.8e-21 73.9 0.0 1 1 9.3e-24 9.8e-21 73.1 0.0 1 42 51 92 51 92 0.97 KRAB box zf-C2H2_jaz PF12171.8 27 ZNF44-204 - 642 6.5e-18 64.5 77.4 1 15 5.3e-05 0.056 13.8 0.0 2 21 217 236 216 237 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF44-204 - 642 6.5e-18 64.5 77.4 2 15 0.0072 7.6 6.9 0.0 2 24 245 267 244 267 0.89 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF44-204 - 642 6.5e-18 64.5 77.4 3 15 0.16 1.7e+02 2.6 0.4 2 11 273 282 272 293 0.78 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF44-204 - 642 6.5e-18 64.5 77.4 4 15 0.0013 1.3 9.3 0.5 2 24 301 323 300 323 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF44-204 - 642 6.5e-18 64.5 77.4 5 15 0.041 43 4.5 0.0 2 22 329 349 328 349 0.88 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF44-204 - 642 6.5e-18 64.5 77.4 6 15 1 1.1e+03 0.1 1.2 2 20 357 375 356 376 0.76 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF44-204 - 642 6.5e-18 64.5 77.4 7 15 0.054 57 4.2 0.2 2 11 385 394 384 395 0.90 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF44-204 - 642 6.5e-18 64.5 77.4 8 15 0.059 63 4.0 0.1 2 21 413 432 412 432 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF44-204 - 642 6.5e-18 64.5 77.4 9 15 2.6e-06 0.0028 17.9 0.1 2 24 441 463 440 463 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF44-204 - 642 6.5e-18 64.5 77.4 10 15 1.8e-05 0.019 15.2 0.3 2 24 469 491 468 491 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF44-204 - 642 6.5e-18 64.5 77.4 11 15 0.17 1.8e+02 2.6 0.4 7 24 501 518 501 519 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF44-204 - 642 6.5e-18 64.5 77.4 12 15 0.072 76 3.8 3.4 2 24 524 546 523 547 0.82 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF44-204 - 642 6.5e-18 64.5 77.4 13 15 0.00089 0.94 9.8 1.1 2 24 552 574 551 574 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF44-204 - 642 6.5e-18 64.5 77.4 14 15 0.037 39 4.7 0.2 2 24 580 602 579 602 0.87 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF44-204 - 642 6.5e-18 64.5 77.4 15 15 0.0015 1.5 9.2 2.5 2 24 608 630 607 630 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_6 PF13912.6 27 ZNF44-204 - 642 1.4e-14 53.7 125.7 1 15 1.3e-05 0.014 15.4 0.1 2 21 217 236 217 237 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF44-204 - 642 1.4e-14 53.7 125.7 2 15 0.52 5.5e+02 0.7 3.3 2 11 245 254 245 270 0.83 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF44-204 - 642 1.4e-14 53.7 125.7 3 15 0.00058 0.61 10.2 1.3 2 12 273 283 273 287 0.90 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF44-204 - 642 1.4e-14 53.7 125.7 4 15 0.00033 0.35 10.9 1.0 2 14 301 313 301 324 0.84 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF44-204 - 642 1.4e-14 53.7 125.7 5 15 0.00095 1 9.5 0.4 2 12 329 339 329 351 0.85 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF44-204 - 642 1.4e-14 53.7 125.7 6 15 0.018 19 5.4 1.1 2 11 357 366 357 379 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF44-204 - 642 1.4e-14 53.7 125.7 7 15 0.0031 3.3 7.8 0.5 2 11 385 394 385 395 0.95 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF44-204 - 642 1.4e-14 53.7 125.7 8 15 0.007 7.3 6.7 0.3 2 11 413 422 413 435 0.87 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF44-204 - 642 1.4e-14 53.7 125.7 9 15 0.0007 0.73 9.9 0.6 2 13 441 452 441 463 0.92 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF44-204 - 642 1.4e-14 53.7 125.7 10 15 6.9e-07 0.00072 19.5 2.2 2 24 469 491 469 494 0.95 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF44-204 - 642 1.4e-14 53.7 125.7 11 15 4.5 4.7e+03 -2.2 1.2 5 12 500 506 497 520 0.71 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF44-204 - 642 1.4e-14 53.7 125.7 12 15 0.0003 0.31 11.1 5.3 2 16 524 538 524 549 0.78 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF44-204 - 642 1.4e-14 53.7 125.7 13 15 4.1e-06 0.0043 17.0 1.3 2 25 552 575 551 577 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF44-204 - 642 1.4e-14 53.7 125.7 14 15 0.047 50 4.1 1.3 2 11 580 589 580 589 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF44-204 - 642 1.4e-14 53.7 125.7 15 15 0.012 13 5.9 1.3 2 12 608 618 608 621 0.93 C2H2-type zinc finger zf-C2H2_11 PF16622.5 29 ZNF44-204 - 642 4.9e-07 29.4 0.6 1 14 2.9e-07 0.0003 20.5 0.0 7 25 219 237 217 238 0.94 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF44-204 - 642 4.9e-07 29.4 0.6 2 14 0.38 4e+02 0.9 0.1 5 14 245 254 243 263 0.84 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF44-204 - 642 4.9e-07 29.4 0.6 3 14 4.2 4.5e+03 -2.5 0.1 7 14 275 282 273 294 0.59 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF44-204 - 642 4.9e-07 29.4 0.6 4 14 8e-06 0.0085 15.8 0.1 5 26 329 350 326 351 0.93 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF44-204 - 642 4.9e-07 29.4 0.6 5 14 0.002 2.1 8.1 3.6 7 26 359 378 356 379 0.93 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF44-204 - 642 4.9e-07 29.4 0.6 6 14 1.4 1.5e+03 -0.9 0.1 5 14 385 394 383 401 0.80 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF44-204 - 642 4.9e-07 29.4 0.6 7 14 0.072 76 3.2 2.5 6 25 414 433 411 435 0.90 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF44-204 - 642 4.9e-07 29.4 0.6 8 14 0.0066 7 6.5 0.0 5 23 441 459 438 462 0.91 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF44-204 - 642 4.9e-07 29.4 0.6 9 14 0.0013 1.4 8.8 0.3 6 23 470 487 467 489 0.93 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF44-204 - 642 4.9e-07 29.4 0.6 10 14 5.5 5.8e+03 -2.8 0.5 8 15 499 506 498 514 0.75 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF44-204 - 642 4.9e-07 29.4 0.6 11 14 0.022 23 4.9 0.5 6 17 525 536 521 544 0.80 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF44-204 - 642 4.9e-07 29.4 0.6 12 14 0.096 1e+02 2.8 0.2 2 18 549 565 548 572 0.76 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF44-204 - 642 4.9e-07 29.4 0.6 13 14 5.2 5.5e+03 -2.8 0.1 7 11 582 586 580 598 0.66 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF44-204 - 642 4.9e-07 29.4 0.6 14 14 0.35 3.7e+02 1.0 1.3 6 15 609 618 607 624 0.86 zinc-finger C2H2-type # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF44-204.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF44-204.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF44-204.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF44-204.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF44-204.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:06:36 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZNF44-205 - 594 7e-103 332.9 128.6 1 16 2.4e-06 0.0024 18.2 4.8 9 26 163 180 152 180 0.87 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF44-205 - 594 7e-103 332.9 128.6 2 16 1.2e-07 0.00012 22.3 0.0 1 24 183 206 183 207 0.97 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF44-205 - 594 7e-103 332.9 128.6 3 16 4.3e-11 4.3e-08 33.2 1.7 2 24 212 234 212 235 0.97 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF44-205 - 594 7e-103 332.9 128.6 4 16 9.1e-11 9.1e-08 32.2 1.8 2 24 240 262 239 263 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF44-205 - 594 7e-103 332.9 128.6 5 16 2.4e-11 2.4e-08 34.0 2.2 2 25 268 291 267 291 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF44-205 - 594 7e-103 332.9 128.6 6 16 7.2e-11 7.2e-08 32.5 1.8 1 24 295 318 295 319 0.97 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF44-205 - 594 7e-103 332.9 128.6 7 16 2.4e-08 2.4e-05 24.6 0.3 2 24 324 346 323 347 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF44-205 - 594 7e-103 332.9 128.6 8 16 1.7e-05 0.017 15.5 1.5 5 22 355 372 353 376 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF44-205 - 594 7e-103 332.9 128.6 9 16 8.3e-09 8.3e-06 26.0 0.4 2 25 380 403 379 404 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF44-205 - 594 7e-103 332.9 128.6 10 16 8.3e-12 8.2e-09 35.5 2.5 2 25 408 431 408 432 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF44-205 - 594 7e-103 332.9 128.6 11 16 1.4e-06 0.0014 18.9 1.0 1 24 435 457 435 459 0.89 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF44-205 - 594 7e-103 332.9 128.6 12 16 2.2e-07 0.00021 21.5 0.8 2 26 463 487 462 487 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF44-205 - 594 7e-103 332.9 128.6 13 16 1.2e-07 0.00012 22.3 1.0 4 25 493 514 493 515 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF44-205 - 594 7e-103 332.9 128.6 14 16 2.6e-09 2.6e-06 27.6 3.6 2 24 519 541 518 542 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF44-205 - 594 7e-103 332.9 128.6 15 16 3.2e-11 3.2e-08 33.6 2.4 2 25 547 570 547 571 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF44-205 - 594 7e-103 332.9 128.6 16 16 0.00011 0.11 13.0 0.4 3 16 576 589 575 589 0.92 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZNF44-205 - 594 5.2e-59 193.6 129.6 1 16 5.9 5.9e+03 -1.9 0.1 5 17 145 157 142 158 0.78 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF44-205 - 594 5.2e-59 193.6 129.6 2 16 7.2e-09 7.1e-06 26.2 0.1 1 20 169 188 169 190 0.95 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF44-205 - 594 5.2e-59 193.6 129.6 3 16 6.8e-06 0.0068 16.8 0.4 1 23 197 219 197 219 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF44-205 - 594 5.2e-59 193.6 129.6 4 16 1.6e-05 0.016 15.6 0.9 1 23 225 247 225 247 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF44-205 - 594 5.2e-59 193.6 129.6 5 16 6.1e-07 0.0006 20.1 1.5 1 23 253 275 253 275 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF44-205 - 594 5.2e-59 193.6 129.6 6 16 8e-08 7.9e-05 22.9 0.3 1 23 281 303 281 303 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF44-205 - 594 5.2e-59 193.6 129.6 7 16 6.6e-07 0.00065 20.0 4.7 1 23 309 331 309 331 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF44-205 - 594 5.2e-59 193.6 129.6 8 16 0.00043 0.43 11.1 0.3 1 23 337 359 337 359 0.92 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF44-205 - 594 5.2e-59 193.6 129.6 9 16 1.4e-05 0.014 15.8 3.2 1 23 365 387 365 387 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF44-205 - 594 5.2e-59 193.6 129.6 10 16 5.2e-07 0.00051 20.3 1.6 1 23 393 415 393 415 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF44-205 - 594 5.2e-59 193.6 129.6 11 16 2.2e-08 2.2e-05 24.7 1.6 1 23 421 443 421 443 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF44-205 - 594 5.2e-59 193.6 129.6 12 16 0.001 1 10.0 1.2 5 23 452 470 449 470 0.93 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF44-205 - 594 5.2e-59 193.6 129.6 13 16 3.5e-06 0.0035 17.7 4.7 1 23 476 498 476 498 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF44-205 - 594 5.2e-59 193.6 129.6 14 16 2e-08 2e-05 24.8 1.3 1 23 504 526 504 526 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF44-205 - 594 5.2e-59 193.6 129.6 15 16 0.00028 0.28 11.7 1.4 1 23 532 554 532 554 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF44-205 - 594 5.2e-59 193.6 129.6 16 16 5.9e-05 0.059 13.8 6.0 1 23 560 582 560 582 0.98 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZNF44-205 - 594 4.8e-47 154.5 127.5 1 15 8.4e-07 0.00084 20.0 0.1 3 20 171 188 169 191 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF44-205 - 594 4.8e-47 154.5 127.5 2 15 0.00018 0.18 12.8 0.6 1 23 197 219 197 220 0.91 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF44-205 - 594 4.8e-47 154.5 127.5 3 15 1.9e-05 0.019 15.8 1.0 1 23 225 247 225 248 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF44-205 - 594 4.8e-47 154.5 127.5 4 15 9.4e-07 0.00094 19.8 1.2 1 23 253 275 253 276 0.97 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF44-205 - 594 4.8e-47 154.5 127.5 5 15 2.7e-06 0.0027 18.4 0.4 1 23 281 303 281 304 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF44-205 - 594 4.8e-47 154.5 127.5 6 15 2.5e-05 0.025 15.4 4.0 1 23 309 331 309 332 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF44-205 - 594 4.8e-47 154.5 127.5 7 15 0.0032 3.2 8.8 0.3 1 23 337 359 337 360 0.83 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF44-205 - 594 4.8e-47 154.5 127.5 8 15 7.6e-05 0.075 13.9 2.5 1 23 365 387 365 388 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF44-205 - 594 4.8e-47 154.5 127.5 9 15 3.4e-06 0.0034 18.1 1.4 1 23 393 415 393 416 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF44-205 - 594 4.8e-47 154.5 127.5 10 15 4e-07 0.0004 21.0 1.2 1 23 421 443 421 444 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF44-205 - 594 4.8e-47 154.5 127.5 11 15 0.002 2 9.5 1.6 1 23 449 470 449 471 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF44-205 - 594 4.8e-47 154.5 127.5 12 15 1.1e-05 0.011 16.6 4.5 1 23 476 498 476 499 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF44-205 - 594 4.8e-47 154.5 127.5 13 15 2e-06 0.0019 18.8 1.0 1 23 504 526 504 527 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF44-205 - 594 4.8e-47 154.5 127.5 14 15 0.00078 0.78 10.8 1.7 1 23 532 554 532 555 0.89 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF44-205 - 594 4.8e-47 154.5 127.5 15 15 0.0001 0.1 13.5 5.2 1 23 560 582 560 583 0.82 C2H2-type zinc finger KRAB PF01352.27 42 ZNF44-205 - 594 5.4e-21 74.0 0.0 1 1 9e-24 8.9e-21 73.3 0.0 1 42 3 44 3 44 0.97 KRAB box zf-C2H2_jaz PF12171.8 27 ZNF44-205 - 594 1.7e-18 66.4 77.4 1 15 5.1e-05 0.051 13.9 0.0 2 21 169 188 168 189 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF44-205 - 594 1.7e-18 66.4 77.4 2 15 0.007 7 7.1 0.0 2 24 197 219 196 219 0.89 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF44-205 - 594 1.7e-18 66.4 77.4 3 15 0.16 1.6e+02 2.8 0.4 2 11 225 234 224 245 0.77 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF44-205 - 594 1.7e-18 66.4 77.4 4 15 0.0012 1.2 9.5 0.5 2 24 253 275 252 275 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF44-205 - 594 1.7e-18 66.4 77.4 5 15 0.04 40 4.7 0.0 2 22 281 301 280 301 0.88 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF44-205 - 594 1.7e-18 66.4 77.4 6 15 0.99 9.9e+02 0.2 1.2 2 20 309 327 308 328 0.76 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF44-205 - 594 1.7e-18 66.4 77.4 7 15 0.052 52 4.3 0.2 2 11 337 346 336 347 0.90 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF44-205 - 594 1.7e-18 66.4 77.4 8 15 0.057 57 4.2 0.1 2 21 365 384 364 384 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF44-205 - 594 1.7e-18 66.4 77.4 9 15 2.5e-06 0.0025 18.0 0.1 2 24 393 415 392 415 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF44-205 - 594 1.7e-18 66.4 77.4 10 15 1.8e-05 0.018 15.3 0.3 2 24 421 443 420 443 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF44-205 - 594 1.7e-18 66.4 77.4 11 15 0.16 1.6e+02 2.7 0.4 7 24 453 470 453 471 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF44-205 - 594 1.7e-18 66.4 77.4 12 15 0.07 69 3.9 3.4 2 24 476 498 475 499 0.82 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF44-205 - 594 1.7e-18 66.4 77.4 13 15 0.00086 0.86 10.0 1.1 2 24 504 526 503 526 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF44-205 - 594 1.7e-18 66.4 77.4 14 15 0.036 36 4.8 0.2 2 24 532 554 531 554 0.87 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF44-205 - 594 1.7e-18 66.4 77.4 15 15 0.0014 1.4 9.3 2.5 2 24 560 582 559 582 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_6 PF13912.6 27 ZNF44-205 - 594 3.4e-15 55.6 125.7 1 15 1.3e-05 0.013 15.5 0.1 2 21 169 188 169 189 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF44-205 - 594 3.4e-15 55.6 125.7 2 15 0.5 5e+02 0.9 3.3 2 11 197 206 197 222 0.83 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF44-205 - 594 3.4e-15 55.6 125.7 3 15 0.00056 0.56 10.3 1.3 2 12 225 235 225 239 0.90 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF44-205 - 594 3.4e-15 55.6 125.7 4 15 0.00032 0.32 11.1 1.0 2 14 253 265 253 276 0.84 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF44-205 - 594 3.4e-15 55.6 125.7 5 15 0.00092 0.92 9.6 0.4 2 12 281 291 281 303 0.85 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF44-205 - 594 3.4e-15 55.6 125.7 6 15 0.017 17 5.5 1.1 2 11 309 318 309 331 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF44-205 - 594 3.4e-15 55.6 125.7 7 15 0.003 3 8.0 0.5 2 11 337 346 337 347 0.95 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF44-205 - 594 3.4e-15 55.6 125.7 8 15 0.0068 6.7 6.8 0.3 2 11 365 374 365 387 0.87 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF44-205 - 594 3.4e-15 55.6 125.7 9 15 0.00068 0.67 10.0 0.6 2 13 393 404 393 415 0.92 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF44-205 - 594 3.4e-15 55.6 125.7 10 15 6.6e-07 0.00066 19.6 2.2 2 24 421 443 421 446 0.95 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF44-205 - 594 3.4e-15 55.6 125.7 11 15 4.3 4.3e+03 -2.1 1.2 5 12 452 458 449 472 0.71 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF44-205 - 594 3.4e-15 55.6 125.7 12 15 0.00029 0.29 11.2 5.3 2 16 476 490 476 501 0.78 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF44-205 - 594 3.4e-15 55.6 125.7 13 15 3.9e-06 0.0039 17.1 1.3 2 25 504 527 503 529 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF44-205 - 594 3.4e-15 55.6 125.7 14 15 0.046 46 4.2 1.3 2 11 532 541 532 541 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF44-205 - 594 3.4e-15 55.6 125.7 15 15 0.012 12 6.0 1.3 2 12 560 570 560 573 0.93 C2H2-type zinc finger zf-C2H2_11 PF16622.5 29 ZNF44-205 - 594 3.8e-07 29.7 0.6 1 15 2.8e-07 0.00028 20.6 0.0 7 25 171 189 169 190 0.94 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF44-205 - 594 3.8e-07 29.7 0.6 2 15 0.36 3.6e+02 1.0 0.1 5 14 197 206 195 215 0.84 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF44-205 - 594 3.8e-07 29.7 0.6 3 15 4.1 4.1e+03 -2.3 0.1 7 14 227 234 225 246 0.59 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF44-205 - 594 3.8e-07 29.7 0.6 4 15 9.9 9.9e+03 -3.6 0.3 7 10 255 258 253 262 0.61 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF44-205 - 594 3.8e-07 29.7 0.6 5 15 7.8e-06 0.0077 16.0 0.1 5 26 281 302 278 303 0.93 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF44-205 - 594 3.8e-07 29.7 0.6 6 15 0.002 2 8.3 3.6 7 26 311 330 308 331 0.93 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF44-205 - 594 3.8e-07 29.7 0.6 7 15 1.4 1.4e+03 -0.8 0.1 5 14 337 346 335 353 0.80 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF44-205 - 594 3.8e-07 29.7 0.6 8 15 0.07 70 3.3 2.5 6 25 366 385 363 387 0.90 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF44-205 - 594 3.8e-07 29.7 0.6 9 15 0.0064 6.4 6.6 0.0 5 23 393 411 390 414 0.91 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF44-205 - 594 3.8e-07 29.7 0.6 10 15 0.0012 1.2 8.9 0.3 6 23 422 439 419 441 0.93 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF44-205 - 594 3.8e-07 29.7 0.6 11 15 5.3 5.3e+03 -2.7 0.5 8 15 451 458 450 466 0.75 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF44-205 - 594 3.8e-07 29.7 0.6 12 15 0.021 21 5.0 0.5 6 17 477 488 473 496 0.80 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF44-205 - 594 3.8e-07 29.7 0.6 13 15 0.093 93 2.9 0.2 2 18 501 517 500 524 0.76 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF44-205 - 594 3.8e-07 29.7 0.6 14 15 5.1 5e+03 -2.6 0.1 7 11 534 538 532 550 0.66 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF44-205 - 594 3.8e-07 29.7 0.6 15 15 0.34 3.4e+02 1.1 1.3 6 15 561 570 559 576 0.86 zinc-finger C2H2-type # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF44-205.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF44-205.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF44-205.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF44-205.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF44-205.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:06:36 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF44-206.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF44-206.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF44-206.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF44-206.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF44-206.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:06:37 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF44-207.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF44-207.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF44-207.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF44-207.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF44-207.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:06:37 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- KRAB PF01352.27 42 ZNF44-208 - 154 4.7e-22 77.4 0.0 1 2 6.6e-26 1.2e-21 76.1 0.0 1 42 51 92 51 92 0.97 KRAB box KRAB PF01352.27 42 ZNF44-208 - 154 4.7e-22 77.4 0.0 2 2 0.36 6.5e+03 -3.1 0.0 34 41 125 132 120 132 0.76 KRAB box # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF44-208.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF44-208.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF44-208.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF44-208.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF44-208.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:06:37 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZNF442-201 - 570 4.7e-109 352.4 158.2 1 17 2.1 2.4e+03 -0.7 0.2 11 25 92 106 83 107 0.80 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF442-201 - 570 4.7e-109 352.4 158.2 2 17 1.2e-05 0.014 15.8 5.2 7 26 116 135 104 135 0.76 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF442-201 - 570 4.7e-109 352.4 158.2 3 17 1.7e-06 0.0019 18.5 0.0 1 24 138 161 138 162 0.98 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF442-201 - 570 4.7e-109 352.4 158.2 4 17 2.5e-09 2.8e-06 27.5 5.4 3 24 168 189 167 190 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF442-201 - 570 4.7e-109 352.4 158.2 5 17 1.6e-10 1.8e-07 31.2 4.2 2 24 195 217 194 218 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF442-201 - 570 4.7e-109 352.4 158.2 6 17 2.5e-10 2.8e-07 30.7 2.1 2 25 223 246 222 246 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF442-201 - 570 4.7e-109 352.4 158.2 7 17 5.9e-11 6.6e-08 32.6 3.5 1 26 250 275 250 275 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF442-201 - 570 4.7e-109 352.4 158.2 8 17 3.9e-09 4.4e-06 26.9 1.7 2 25 279 302 278 303 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF442-201 - 570 4.7e-109 352.4 158.2 9 17 6e-11 6.7e-08 32.6 1.3 1 23 306 328 306 331 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF442-201 - 570 4.7e-109 352.4 158.2 10 17 1e-09 1.2e-06 28.7 0.6 2 24 335 357 334 359 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF442-201 - 570 4.7e-109 352.4 158.2 11 17 1.6e-10 1.8e-07 31.3 1.9 5 24 366 385 363 386 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF442-201 - 570 4.7e-109 352.4 158.2 12 17 7.5e-08 8.4e-05 22.8 1.4 1 24 390 412 390 413 0.88 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF442-201 - 570 4.7e-109 352.4 158.2 13 17 6.1e-10 6.8e-07 29.4 3.2 2 25 418 441 417 442 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF442-201 - 570 4.7e-109 352.4 158.2 14 17 3e-09 3.3e-06 27.3 4.5 2 26 446 470 445 470 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF442-201 - 570 4.7e-109 352.4 158.2 15 17 5.7e-12 6.4e-09 35.8 1.1 1 25 473 497 473 497 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF442-201 - 570 4.7e-109 352.4 158.2 16 17 1.8e-10 2e-07 31.1 0.6 2 26 502 526 502 526 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF442-201 - 570 4.7e-109 352.4 158.2 17 17 2.6e-08 2.9e-05 24.3 1.2 2 23 530 551 530 554 0.92 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZNF442-201 - 570 2.2e-55 182.2 148.0 1 17 1.1 1.2e+03 0.3 0.1 5 17 100 112 98 113 0.83 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF442-201 - 570 2.2e-55 182.2 148.0 2 17 1.4e-08 1.6e-05 25.1 0.1 1 21 124 144 124 145 0.94 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF442-201 - 570 2.2e-55 182.2 148.0 3 17 6.6e-05 0.073 13.6 0.6 1 23 152 174 152 174 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF442-201 - 570 2.2e-55 182.2 148.0 4 17 0.0034 3.8 8.2 3.4 1 23 180 202 180 202 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF442-201 - 570 2.2e-55 182.2 148.0 5 17 2.5e-07 0.00028 21.2 3.1 1 23 208 230 208 230 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF442-201 - 570 2.2e-55 182.2 148.0 6 17 7.6e-08 8.5e-05 22.8 1.2 1 23 236 258 236 258 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF442-201 - 570 2.2e-55 182.2 148.0 7 17 1.7e-06 0.0019 18.6 4.0 1 23 264 286 264 286 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF442-201 - 570 2.2e-55 182.2 148.0 8 17 9.3e-06 0.01 16.2 3.5 1 23 292 314 292 314 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF442-201 - 570 2.2e-55 182.2 148.0 9 17 5.5e-06 0.0062 16.9 4.2 1 23 320 342 320 342 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF442-201 - 570 2.2e-55 182.2 148.0 10 17 7.7e-06 0.0087 16.5 1.0 1 23 348 370 348 370 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF442-201 - 570 2.2e-55 182.2 148.0 11 17 1.8e-07 0.0002 21.6 0.7 1 23 376 398 376 398 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF442-201 - 570 2.2e-55 182.2 148.0 12 17 0.0015 1.7 9.2 0.8 5 23 407 425 404 425 0.93 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF442-201 - 570 2.2e-55 182.2 148.0 13 17 0.00013 0.15 12.6 4.1 1 23 431 453 431 453 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF442-201 - 570 2.2e-55 182.2 148.0 14 17 4.5e-07 0.00051 20.4 2.2 1 23 459 481 459 481 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF442-201 - 570 2.2e-55 182.2 148.0 15 17 0.00064 0.71 10.4 1.7 1 23 487 509 487 509 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF442-201 - 570 2.2e-55 182.2 148.0 16 17 1.9e-06 0.0021 18.4 1.1 1 23 515 537 515 537 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF442-201 - 570 2.2e-55 182.2 148.0 17 17 3.8e-06 0.0042 17.5 3.9 1 23 543 565 543 565 0.97 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZNF442-201 - 570 5.4e-45 148.2 142.6 1 17 4.2 4.7e+03 -1.0 0.1 5 16 100 111 99 113 0.76 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF442-201 - 570 5.4e-45 148.2 142.6 2 17 2.1e-06 0.0024 18.6 0.1 3 21 126 144 124 146 0.91 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF442-201 - 570 5.4e-45 148.2 142.6 3 17 0.00058 0.65 11.0 0.8 1 23 152 174 152 175 0.90 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF442-201 - 570 5.4e-45 148.2 142.6 4 17 5.4e-05 0.061 14.2 3.0 1 23 180 202 180 203 0.97 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF442-201 - 570 5.4e-45 148.2 142.6 5 17 1.9e-06 0.0021 18.7 2.5 1 23 208 230 208 231 0.97 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF442-201 - 570 5.4e-45 148.2 142.6 6 17 5.9e-06 0.0066 17.2 1.0 1 23 236 258 236 259 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF442-201 - 570 5.4e-45 148.2 142.6 7 17 1e-05 0.011 16.5 3.1 1 23 264 286 264 287 0.97 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF442-201 - 570 5.4e-45 148.2 142.6 8 17 8.8e-07 0.00098 19.8 3.0 1 23 292 314 292 315 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF442-201 - 570 5.4e-45 148.2 142.6 9 17 0.00024 0.27 12.2 3.4 1 23 320 342 320 343 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF442-201 - 570 5.4e-45 148.2 142.6 10 17 0.00019 0.21 12.5 1.0 1 23 348 370 348 371 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF442-201 - 570 5.4e-45 148.2 142.6 11 17 8.1e-06 0.0091 16.8 0.6 1 23 376 398 376 399 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF442-201 - 570 5.4e-45 148.2 142.6 12 17 0.0025 2.8 9.0 1.0 1 23 404 425 404 426 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF442-201 - 570 5.4e-45 148.2 142.6 13 17 6.6e-06 0.0074 17.0 3.5 1 23 431 453 431 454 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF442-201 - 570 5.4e-45 148.2 142.6 14 17 0.0018 2 9.5 1.9 1 23 459 481 459 482 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF442-201 - 570 5.4e-45 148.2 142.6 15 17 0.0016 1.8 9.6 2.2 1 23 487 509 487 510 0.91 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF442-201 - 570 5.4e-45 148.2 142.6 16 17 3.5e-06 0.0039 17.9 0.9 1 23 515 537 515 538 0.90 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF442-201 - 570 5.4e-45 148.2 142.6 17 17 4.2e-05 0.047 14.6 3.4 1 23 543 565 543 566 0.95 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF442-201 - 570 2e-22 78.6 133.9 1 16 1.7e-05 0.019 14.9 0.4 2 20 124 142 123 142 0.89 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF442-201 - 570 2e-22 78.6 133.9 2 16 0.013 14 5.8 0.3 2 11 152 161 152 161 0.95 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF442-201 - 570 2e-22 78.6 133.9 3 16 0.029 33 4.6 2.5 2 14 180 192 180 203 0.84 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF442-201 - 570 2e-22 78.6 133.9 4 16 0.0039 4.3 7.4 1.5 2 14 208 220 208 232 0.81 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF442-201 - 570 2e-22 78.6 133.9 5 16 0.0053 5.9 7.0 0.7 2 24 236 258 236 261 0.92 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF442-201 - 570 2e-22 78.6 133.9 6 16 0.00097 1.1 9.3 3.5 2 24 264 286 264 288 0.87 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF442-201 - 570 2e-22 78.6 133.9 7 16 0.0039 4.4 7.4 2.7 2 24 292 314 292 317 0.79 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF442-201 - 570 2e-22 78.6 133.9 8 16 0.014 16 5.6 2.4 2 21 320 339 320 343 0.74 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF442-201 - 570 2e-22 78.6 133.9 9 16 0.00081 0.91 9.6 0.9 2 12 348 358 348 372 0.77 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF442-201 - 570 2e-22 78.6 133.9 10 16 4.9e-05 0.055 13.5 0.7 2 24 376 398 376 401 0.91 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF442-201 - 570 2e-22 78.6 133.9 11 16 7.7 8.6e+03 -3.1 0.8 4 11 406 412 404 425 0.73 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF442-201 - 570 2e-22 78.6 133.9 12 16 4.2e-06 0.0047 16.9 4.1 2 27 431 456 431 456 0.96 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF442-201 - 570 2e-22 78.6 133.9 13 16 0.00063 0.7 10.0 1.5 2 17 459 474 459 482 0.81 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF442-201 - 570 2e-22 78.6 133.9 14 16 0.0043 4.8 7.3 0.7 2 12 487 497 487 507 0.91 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF442-201 - 570 2e-22 78.6 133.9 15 16 5.8e-06 0.0065 16.4 1.6 2 24 515 537 514 540 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF442-201 - 570 2e-22 78.6 133.9 16 16 1.6e-08 1.8e-05 24.6 3.6 2 26 543 567 542 568 0.97 C2H2-type zinc finger zf-C2H2_jaz PF12171.8 27 ZNF442-201 - 570 3.6e-19 68.6 88.4 1 16 2.5e-05 0.028 14.7 0.0 2 21 124 143 123 144 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF442-201 - 570 3.6e-19 68.6 88.4 2 16 0.0038 4.2 7.8 0.0 2 24 152 174 151 174 0.91 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF442-201 - 570 3.6e-19 68.6 88.4 3 16 6.1 6.8e+03 -2.5 1.5 2 22 180 200 179 202 0.61 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF442-201 - 570 3.6e-19 68.6 88.4 4 16 7.1e-05 0.08 13.3 0.9 2 24 208 230 207 230 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF442-201 - 570 3.6e-19 68.6 88.4 5 16 0.14 1.5e+02 2.8 0.1 2 24 236 258 235 258 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF442-201 - 570 3.6e-19 68.6 88.4 6 16 0.0055 6.2 7.2 0.4 2 21 264 283 263 284 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF442-201 - 570 3.6e-19 68.6 88.4 7 16 0.00018 0.2 12.0 0.6 2 24 292 314 291 314 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF442-201 - 570 3.6e-19 68.6 88.4 8 16 0.0059 6.6 7.1 0.4 2 21 320 339 319 340 0.95 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF442-201 - 570 3.6e-19 68.6 88.4 9 16 4.9e-05 0.055 13.8 0.1 2 24 348 370 347 370 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF442-201 - 570 3.6e-19 68.6 88.4 10 16 0.0012 1.3 9.4 0.1 2 24 376 398 375 398 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF442-201 - 570 3.6e-19 68.6 88.4 11 16 0.038 42 4.6 0.4 7 24 408 425 408 425 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF442-201 - 570 3.6e-19 68.6 88.4 12 16 0.21 2.4e+02 2.2 1.5 2 12 431 441 430 442 0.89 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF442-201 - 570 3.6e-19 68.6 88.4 13 16 0.0055 6.2 7.2 0.6 2 21 459 478 458 479 0.83 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF442-201 - 570 3.6e-19 68.6 88.4 14 16 0.042 48 4.4 0.4 2 12 487 497 486 497 0.89 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF442-201 - 570 3.6e-19 68.6 88.4 15 16 0.00025 0.29 11.5 0.4 2 24 515 537 514 537 0.95 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF442-201 - 570 3.6e-19 68.6 88.4 16 16 0.0027 3 8.2 0.9 2 24 543 565 542 566 0.94 Zinc-finger double-stranded RNA-binding Zn-ribbon_8 PF09723.10 40 ZNF442-201 - 570 7.4e-07 29.2 93.3 1 15 0.029 33 4.7 2.6 6 15 124 133 97 134 0.65 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF442-201 - 570 7.4e-07 29.2 93.3 2 15 0.0017 1.9 8.6 1.8 6 34 124 159 122 161 0.72 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF442-201 - 570 7.4e-07 29.2 93.3 3 15 0.053 60 3.9 3.9 6 32 152 185 151 189 0.77 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF442-201 - 570 7.4e-07 29.2 93.3 4 15 2.4 2.7e+03 -1.4 8.6 6 34 180 215 178 218 0.76 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF442-201 - 570 7.4e-07 29.2 93.3 5 15 0.25 2.8e+02 1.7 0.7 6 15 208 217 207 229 0.87 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF442-201 - 570 7.4e-07 29.2 93.3 6 15 0.0015 1.6 8.9 0.1 6 21 236 251 235 260 0.81 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF442-201 - 570 7.4e-07 29.2 93.3 7 15 0.00022 0.24 11.5 2.5 6 34 264 299 263 302 0.73 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF442-201 - 570 7.4e-07 29.2 93.3 8 15 0.005 5.6 7.2 5.0 7 36 293 329 291 332 0.73 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF442-201 - 570 7.4e-07 29.2 93.3 9 15 0.0013 1.4 9.1 2.0 6 34 320 355 319 359 0.77 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF442-201 - 570 7.4e-07 29.2 93.3 10 15 0.011 13 6.0 3.9 6 22 376 392 375 412 0.62 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF442-201 - 570 7.4e-07 29.2 93.3 11 15 0.26 2.9e+02 1.7 5.8 6 34 404 438 403 440 0.48 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF442-201 - 570 7.4e-07 29.2 93.3 12 15 0.0098 11 6.2 8.2 6 34 431 466 430 469 0.77 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF442-201 - 570 7.4e-07 29.2 93.3 13 15 0.0096 11 6.3 6.1 6 34 459 494 454 497 0.86 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF442-201 - 570 7.4e-07 29.2 93.3 14 15 0.089 99 3.2 1.0 6 16 487 497 486 504 0.89 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF442-201 - 570 7.4e-07 29.2 93.3 15 15 1.5e-05 0.017 15.2 2.0 6 36 515 552 514 556 0.70 Zinc ribbon domain # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF442-201.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF442-201.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF442-201.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF442-201.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF442-201.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:06:38 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF442-202.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF442-202.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF442-202.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF442-202.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF442-202.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:06:38 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZNF442-203 - 558 2.9e-109 353.1 158.1 1 17 2.2 2.3e+03 -0.7 0.2 11 25 80 94 71 95 0.80 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF442-203 - 558 2.9e-109 353.1 158.1 2 17 1.2e-05 0.013 15.9 5.1 7 26 104 123 92 123 0.76 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF442-203 - 558 2.9e-109 353.1 158.1 3 17 1.8e-06 0.0019 18.6 0.0 1 24 126 149 126 150 0.98 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF442-203 - 558 2.9e-109 353.1 158.1 4 17 2.6e-09 2.7e-06 27.5 5.4 3 24 156 177 155 178 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF442-203 - 558 2.9e-109 353.1 158.1 5 17 1.7e-10 1.8e-07 31.3 4.2 2 24 183 205 182 206 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF442-203 - 558 2.9e-109 353.1 158.1 6 17 2.6e-10 2.7e-07 30.7 2.1 2 25 211 234 210 234 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF442-203 - 558 2.9e-109 353.1 158.1 7 17 6.1e-11 6.5e-08 32.7 3.5 1 26 238 263 238 263 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF442-203 - 558 2.9e-109 353.1 158.1 8 17 4.1e-09 4.3e-06 26.9 1.7 2 25 267 290 266 291 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF442-203 - 558 2.9e-109 353.1 158.1 9 17 6.2e-11 6.5e-08 32.7 1.3 1 23 294 316 294 319 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF442-203 - 558 2.9e-109 353.1 158.1 10 17 1.1e-09 1.1e-06 28.7 0.6 2 24 323 345 322 347 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF442-203 - 558 2.9e-109 353.1 158.1 11 17 1.6e-10 1.7e-07 31.3 1.9 5 24 354 373 351 374 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF442-203 - 558 2.9e-109 353.1 158.1 12 17 7.8e-08 8.2e-05 22.9 1.4 1 24 378 400 378 401 0.88 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF442-203 - 558 2.9e-109 353.1 158.1 13 17 6.3e-10 6.7e-07 29.5 3.2 2 25 406 429 405 430 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF442-203 - 558 2.9e-109 353.1 158.1 14 17 3.1e-09 3.2e-06 27.3 4.5 2 26 434 458 433 458 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF442-203 - 558 2.9e-109 353.1 158.1 15 17 5.9e-12 6.2e-09 35.9 1.1 1 25 461 485 461 485 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF442-203 - 558 2.9e-109 353.1 158.1 16 17 1.9e-10 2e-07 31.1 0.6 2 26 490 514 490 514 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF442-203 - 558 2.9e-109 353.1 158.1 17 17 2.7e-08 2.8e-05 24.3 1.2 2 23 518 539 518 542 0.92 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZNF442-203 - 558 1.4e-55 182.7 148.0 1 17 1.1 1.2e+03 0.3 0.1 5 17 88 100 86 101 0.83 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF442-203 - 558 1.4e-55 182.7 148.0 2 17 1.5e-08 1.5e-05 25.1 0.1 1 21 112 132 112 133 0.94 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF442-203 - 558 1.4e-55 182.7 148.0 3 17 6.8e-05 0.072 13.6 0.6 1 23 140 162 140 162 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF442-203 - 558 1.4e-55 182.7 148.0 4 17 0.0035 3.7 8.2 3.4 1 23 168 190 168 190 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF442-203 - 558 1.4e-55 182.7 148.0 5 17 2.6e-07 0.00027 21.2 3.1 1 23 196 218 196 218 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF442-203 - 558 1.4e-55 182.7 148.0 6 17 7.9e-08 8.3e-05 22.8 1.2 1 23 224 246 224 246 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF442-203 - 558 1.4e-55 182.7 148.0 7 17 1.7e-06 0.0018 18.6 4.0 1 23 252 274 252 274 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF442-203 - 558 1.4e-55 182.7 148.0 8 17 9.7e-06 0.01 16.2 3.5 1 23 280 302 280 302 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF442-203 - 558 1.4e-55 182.7 148.0 9 17 5.7e-06 0.006 17.0 4.2 1 23 308 330 308 330 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF442-203 - 558 1.4e-55 182.7 148.0 10 17 8e-06 0.0084 16.5 1.0 1 23 336 358 336 358 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF442-203 - 558 1.4e-55 182.7 148.0 11 17 1.9e-07 0.0002 21.7 0.7 1 23 364 386 364 386 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF442-203 - 558 1.4e-55 182.7 148.0 12 17 0.0016 1.7 9.3 0.8 5 23 395 413 392 413 0.93 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF442-203 - 558 1.4e-55 182.7 148.0 13 17 0.00014 0.15 12.6 4.1 1 23 419 441 419 441 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF442-203 - 558 1.4e-55 182.7 148.0 14 17 4.7e-07 0.00049 20.4 2.2 1 23 447 469 447 469 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF442-203 - 558 1.4e-55 182.7 148.0 15 17 0.00066 0.7 10.5 1.7 1 23 475 497 475 497 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF442-203 - 558 1.4e-55 182.7 148.0 16 17 1.9e-06 0.002 18.5 1.1 1 23 503 525 503 525 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF442-203 - 558 1.4e-55 182.7 148.0 17 17 3.9e-06 0.0041 17.5 3.9 1 23 531 553 531 553 0.97 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZNF442-203 - 558 3.6e-45 148.7 142.6 1 17 4.3 4.6e+03 -1.0 0.1 5 16 88 99 87 101 0.76 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF442-203 - 558 3.6e-45 148.7 142.6 2 17 2.2e-06 0.0023 18.6 0.1 3 21 114 132 112 134 0.91 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF442-203 - 558 3.6e-45 148.7 142.6 3 17 0.0006 0.63 11.0 0.8 1 23 140 162 140 163 0.90 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF442-203 - 558 3.6e-45 148.7 142.6 4 17 5.6e-05 0.059 14.2 3.0 1 23 168 190 168 191 0.97 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF442-203 - 558 3.6e-45 148.7 142.6 5 17 2e-06 0.0021 18.8 2.5 1 23 196 218 196 219 0.97 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF442-203 - 558 3.6e-45 148.7 142.6 6 17 6.1e-06 0.0064 17.2 1.0 1 23 224 246 224 247 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF442-203 - 558 3.6e-45 148.7 142.6 7 17 1e-05 0.011 16.5 3.1 1 23 252 274 252 275 0.97 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF442-203 - 558 3.6e-45 148.7 142.6 8 17 9.1e-07 0.00096 19.8 3.0 1 23 280 302 280 303 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF442-203 - 558 3.6e-45 148.7 142.6 9 17 0.00025 0.26 12.2 3.4 1 23 308 330 308 331 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF442-203 - 558 3.6e-45 148.7 142.6 10 17 0.0002 0.21 12.5 1.0 1 23 336 358 336 359 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF442-203 - 558 3.6e-45 148.7 142.6 11 17 8.4e-06 0.0088 16.8 0.6 1 23 364 386 364 387 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF442-203 - 558 3.6e-45 148.7 142.6 12 17 0.0026 2.7 9.1 1.0 1 23 392 413 392 414 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF442-203 - 558 3.6e-45 148.7 142.6 13 17 6.8e-06 0.0072 17.1 3.5 1 23 419 441 419 442 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF442-203 - 558 3.6e-45 148.7 142.6 14 17 0.0018 1.9 9.5 1.9 1 23 447 469 447 470 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF442-203 - 558 3.6e-45 148.7 142.6 15 17 0.0016 1.7 9.7 2.2 1 23 475 497 475 498 0.91 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF442-203 - 558 3.6e-45 148.7 142.6 16 17 3.6e-06 0.0038 17.9 0.9 1 23 503 525 503 526 0.90 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF442-203 - 558 3.6e-45 148.7 142.6 17 17 4.3e-05 0.045 14.6 3.4 1 23 531 553 531 554 0.95 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF442-203 - 558 8.6e-23 79.8 133.2 1 16 1.8e-05 0.019 15.0 0.4 2 20 112 130 111 130 0.89 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF442-203 - 558 8.6e-23 79.8 133.2 2 16 0.013 14 5.8 0.3 2 11 140 149 140 149 0.95 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF442-203 - 558 8.6e-23 79.8 133.2 3 16 0.03 32 4.7 2.5 2 14 168 180 168 191 0.84 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF442-203 - 558 8.6e-23 79.8 133.2 4 16 0.004 4.2 7.5 1.5 2 14 196 208 196 220 0.81 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF442-203 - 558 8.6e-23 79.8 133.2 5 16 0.0055 5.8 7.0 0.7 2 24 224 246 224 249 0.92 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF442-203 - 558 8.6e-23 79.8 133.2 6 16 0.001 1.1 9.4 3.5 2 24 252 274 252 276 0.87 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF442-203 - 558 8.6e-23 79.8 133.2 7 16 0.0041 4.3 7.5 2.7 2 24 280 302 280 305 0.79 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF442-203 - 558 8.6e-23 79.8 133.2 8 16 0.015 15 5.7 2.4 2 21 308 327 308 331 0.74 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF442-203 - 558 8.6e-23 79.8 133.2 9 16 0.00084 0.89 9.6 0.9 2 12 336 346 336 360 0.77 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF442-203 - 558 8.6e-23 79.8 133.2 10 16 5.1e-05 0.054 13.5 0.7 2 24 364 386 364 389 0.91 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF442-203 - 558 8.6e-23 79.8 133.2 11 16 8 8.4e+03 -3.0 0.8 4 11 394 400 392 413 0.73 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF442-203 - 558 8.6e-23 79.8 133.2 12 16 4.4e-06 0.0046 16.9 4.1 2 27 419 444 419 444 0.96 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF442-203 - 558 8.6e-23 79.8 133.2 13 16 0.00065 0.69 10.0 1.5 2 17 447 462 447 470 0.81 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF442-203 - 558 8.6e-23 79.8 133.2 14 16 0.0038 4 7.6 0.5 2 12 475 485 475 496 0.91 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF442-203 - 558 8.6e-23 79.8 133.2 15 16 6e-06 0.0064 16.5 1.6 2 24 503 525 502 528 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF442-203 - 558 8.6e-23 79.8 133.2 16 16 1.7e-08 1.8e-05 24.6 3.6 2 26 531 555 530 556 0.97 C2H2-type zinc finger zf-C2H2_jaz PF12171.8 27 ZNF442-203 - 558 2.4e-19 69.1 88.4 1 16 2.6e-05 0.027 14.7 0.0 2 21 112 131 111 132 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF442-203 - 558 2.4e-19 69.1 88.4 2 16 0.0039 4.1 7.8 0.0 2 24 140 162 139 162 0.91 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF442-203 - 558 2.4e-19 69.1 88.4 3 16 6.3 6.6e+03 -2.4 1.5 2 22 168 188 167 190 0.61 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF442-203 - 558 2.4e-19 69.1 88.4 4 16 7.4e-05 0.078 13.3 0.9 2 24 196 218 195 218 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF442-203 - 558 2.4e-19 69.1 88.4 5 16 0.14 1.5e+02 2.8 0.1 2 24 224 246 223 246 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF442-203 - 558 2.4e-19 69.1 88.4 6 16 0.0057 6 7.3 0.4 2 21 252 271 251 272 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF442-203 - 558 2.4e-19 69.1 88.4 7 16 0.00018 0.19 12.0 0.6 2 24 280 302 279 302 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF442-203 - 558 2.4e-19 69.1 88.4 8 16 0.0061 6.5 7.2 0.4 2 21 308 327 307 328 0.95 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF442-203 - 558 2.4e-19 69.1 88.4 9 16 5.1e-05 0.054 13.8 0.1 2 24 336 358 335 358 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF442-203 - 558 2.4e-19 69.1 88.4 10 16 0.0012 1.3 9.4 0.1 2 24 364 386 363 386 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF442-203 - 558 2.4e-19 69.1 88.4 11 16 0.039 41 4.6 0.4 7 24 396 413 396 413 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF442-203 - 558 2.4e-19 69.1 88.4 12 16 0.22 2.3e+02 2.2 1.5 2 12 419 429 418 430 0.89 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF442-203 - 558 2.4e-19 69.1 88.4 13 16 0.0057 6.1 7.3 0.6 2 21 447 466 446 467 0.83 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF442-203 - 558 2.4e-19 69.1 88.4 14 16 0.044 47 4.4 0.4 2 12 475 485 474 485 0.89 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF442-203 - 558 2.4e-19 69.1 88.4 15 16 0.00026 0.28 11.5 0.4 2 24 503 525 502 525 0.95 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF442-203 - 558 2.4e-19 69.1 88.4 16 16 0.0028 2.9 8.3 0.9 2 24 531 553 530 554 0.94 Zinc-finger double-stranded RNA-binding Zn-ribbon_8 PF09723.10 40 ZNF442-203 - 558 1e-06 28.7 94.2 1 15 0.058 62 3.8 3.5 6 15 112 121 70 122 0.74 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF442-203 - 558 1e-06 28.7 94.2 2 15 0.0019 2 8.6 1.8 6 34 112 147 110 149 0.72 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF442-203 - 558 1e-06 28.7 94.2 3 15 0.078 82 3.4 4.4 6 32 140 173 139 177 0.77 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF442-203 - 558 1e-06 28.7 94.2 4 15 2.7 2.9e+03 -1.5 8.7 6 34 168 203 166 207 0.76 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF442-203 - 558 1e-06 28.7 94.2 5 15 0.25 2.6e+02 1.8 0.7 6 15 196 205 195 217 0.87 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF442-203 - 558 1e-06 28.7 94.2 6 15 0.0015 1.6 8.9 0.1 6 21 224 239 223 248 0.81 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF442-203 - 558 1e-06 28.7 94.2 7 15 0.00023 0.24 11.5 2.6 6 34 252 287 251 290 0.73 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF442-203 - 558 1e-06 28.7 94.2 8 15 0.0052 5.4 7.2 5.0 7 36 281 317 279 320 0.73 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF442-203 - 558 1e-06 28.7 94.2 9 15 0.0014 1.5 9.0 2.0 6 34 308 343 307 346 0.76 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF442-203 - 558 1e-06 28.7 94.2 10 15 0.012 13 6.0 3.9 6 22 364 380 363 400 0.62 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF442-203 - 558 1e-06 28.7 94.2 11 15 0.28 3e+02 1.6 5.9 6 34 392 426 391 428 0.48 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF442-203 - 558 1e-06 28.7 94.2 12 15 0.011 12 6.1 8.4 6 34 419 454 418 457 0.77 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF442-203 - 558 1e-06 28.7 94.2 13 15 0.0095 10 6.4 6.1 6 34 447 482 442 486 0.86 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF442-203 - 558 1e-06 28.7 94.2 14 15 0.098 1e+02 3.1 1.1 6 16 475 485 474 492 0.89 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF442-203 - 558 1e-06 28.7 94.2 15 15 1.6e-05 0.017 15.3 2.0 6 36 503 540 502 544 0.70 Zinc ribbon domain # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF442-203.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF442-203.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF442-203.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF442-203.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF442-203.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:06:39 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- KRAB PF01352.27 42 ZNF442-204 - 82 3.2e-23 81.1 0.0 1 1 2.3e-27 4.2e-23 80.7 0.0 1 42 21 62 21 62 0.97 KRAB box # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF442-204.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF442-204.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF442-204.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF442-204.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF442-204.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:06:39 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF442-205.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF442-205.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF442-205.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF442-205.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF442-205.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:06:39 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZNF443-201 - 671 1.2e-130 420.7 173.0 1 19 3.6 3.8e+03 -1.4 0.2 11 21 127 137 126 139 0.78 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF443-201 - 671 1.2e-130 420.7 173.0 2 19 1e-09 1.1e-06 28.8 1.7 2 26 156 180 155 180 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF443-201 - 671 1.2e-130 420.7 173.0 3 19 1.4e-09 1.5e-06 28.4 0.1 1 24 183 206 183 207 0.98 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF443-201 - 671 1.2e-130 420.7 173.0 4 19 4.2e-10 4.5e-07 30.0 2.9 5 25 215 235 212 235 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF443-201 - 671 1.2e-130 420.7 173.0 5 19 4.4e-11 4.7e-08 33.1 2.1 2 24 240 262 239 263 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF443-201 - 671 1.2e-130 420.7 173.0 6 19 1.1e-10 1.2e-07 31.9 2.9 2 24 268 290 267 291 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF443-201 - 671 1.2e-130 420.7 173.0 7 19 4.2e-10 4.5e-07 30.0 1.7 5 25 299 319 298 319 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF443-201 - 671 1.2e-130 420.7 173.0 8 19 7.8e-08 8.2e-05 22.9 2.3 1 26 323 348 323 348 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF443-201 - 671 1.2e-130 420.7 173.0 9 19 1.5e-08 1.6e-05 25.1 2.1 2 25 352 375 351 376 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF443-201 - 671 1.2e-130 420.7 173.0 10 19 7.7e-11 8.1e-08 32.4 1.3 1 23 379 401 379 404 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF443-201 - 671 1.2e-130 420.7 173.0 11 19 5.8e-10 6.1e-07 29.6 0.6 2 25 408 431 407 432 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF443-201 - 671 1.2e-130 420.7 173.0 12 19 4e-09 4.2e-06 26.9 3.3 2 24 436 458 436 459 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF443-201 - 671 1.2e-130 420.7 173.0 13 19 9.3e-08 9.8e-05 22.6 1.4 1 19 463 481 463 489 0.87 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF443-201 - 671 1.2e-130 420.7 173.0 14 19 2.5e-10 2.7e-07 30.7 2.3 2 25 491 514 490 515 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF443-201 - 671 1.2e-130 420.7 173.0 15 19 4.2e-12 4.5e-09 36.3 4.9 2 26 519 543 518 543 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF443-201 - 671 1.2e-130 420.7 173.0 16 19 4.8e-11 5.1e-08 33.0 0.5 1 25 546 570 546 570 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF443-201 - 671 1.2e-130 420.7 173.0 17 19 2.9e-09 3.1e-06 27.4 2.2 4 26 577 599 575 599 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF443-201 - 671 1.2e-130 420.7 173.0 18 19 5e-11 5.3e-08 32.9 0.3 2 26 603 627 603 627 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF443-201 - 671 1.2e-130 420.7 173.0 19 19 5.1e-09 5.4e-06 26.6 4.1 5 26 638 660 630 660 0.78 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZNF443-201 - 671 5.9e-65 212.3 168.0 1 19 0.17 1.8e+02 2.8 1.7 7 23 147 163 134 163 0.88 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF443-201 - 671 5.9e-65 212.3 168.0 2 19 1.3e-08 1.4e-05 25.3 0.1 1 21 169 189 169 190 0.95 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF443-201 - 671 5.9e-65 212.3 168.0 3 19 4.2e-05 0.044 14.3 1.8 1 23 197 219 197 219 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF443-201 - 671 5.9e-65 212.3 168.0 4 19 5.9e-06 0.0063 16.9 3.0 1 23 225 247 225 247 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF443-201 - 671 5.9e-65 212.3 168.0 5 19 4.8e-06 0.005 17.2 2.3 1 23 253 275 253 275 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF443-201 - 671 5.9e-65 212.3 168.0 6 19 5.9e-05 0.062 13.8 2.8 1 23 281 303 281 303 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF443-201 - 671 5.9e-65 212.3 168.0 7 19 2.2e-07 0.00023 21.4 0.6 1 23 309 331 309 331 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF443-201 - 671 5.9e-65 212.3 168.0 8 19 5.8e-06 0.0062 16.9 3.2 1 23 337 359 337 359 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF443-201 - 671 5.9e-65 212.3 168.0 9 19 1.2e-05 0.013 16.0 3.5 1 23 365 387 365 387 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF443-201 - 671 5.9e-65 212.3 168.0 10 19 1.2e-06 0.0012 19.1 2.5 1 23 393 415 393 415 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF443-201 - 671 5.9e-65 212.3 168.0 11 19 8e-07 0.00084 19.7 1.9 1 23 421 443 421 443 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF443-201 - 671 5.9e-65 212.3 168.0 12 19 1.5e-06 0.0016 18.8 1.6 1 23 449 471 449 471 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF443-201 - 671 5.9e-65 212.3 168.0 13 19 5.9 6.2e+03 -2.0 0.6 8 23 483 498 477 498 0.72 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF443-201 - 671 5.9e-65 212.3 168.0 14 19 1.6e-07 0.00017 21.9 2.8 1 23 504 526 504 526 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF443-201 - 671 5.9e-65 212.3 168.0 15 19 2.8e-06 0.003 17.9 1.7 1 23 532 554 532 554 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF443-201 - 671 5.9e-65 212.3 168.0 16 19 0.00027 0.28 11.7 1.4 1 23 560 582 560 582 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF443-201 - 671 5.9e-65 212.3 168.0 17 19 2.6e-06 0.0027 18.1 1.5 1 23 588 610 588 610 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF443-201 - 671 5.9e-65 212.3 168.0 18 19 9.3e-08 9.8e-05 22.6 2.0 1 23 616 638 616 638 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF443-201 - 671 5.9e-65 212.3 168.0 19 19 9.3e-08 9.8e-05 22.6 2.0 1 23 649 671 649 671 0.99 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZNF443-201 - 671 1.8e-51 168.3 163.5 1 19 0.54 5.7e+02 1.8 0.6 7 23 147 163 147 164 0.89 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF443-201 - 671 1.8e-51 168.3 163.5 2 19 1.7e-06 0.0018 19.0 0.1 3 21 171 189 169 191 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF443-201 - 671 1.8e-51 168.3 163.5 3 19 0.00063 0.66 11.0 2.0 1 23 197 219 197 220 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF443-201 - 671 1.8e-51 168.3 163.5 4 19 9.1e-06 0.0096 16.7 2.5 1 23 225 247 225 248 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF443-201 - 671 1.8e-51 168.3 163.5 5 19 1.3e-05 0.014 16.2 2.0 1 23 253 275 253 276 0.97 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF443-201 - 671 1.8e-51 168.3 163.5 6 19 6.9e-05 0.073 14.0 2.6 1 23 281 303 281 304 0.97 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF443-201 - 671 1.8e-51 168.3 163.5 7 19 1.9e-06 0.002 18.8 0.6 1 23 309 331 309 332 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF443-201 - 671 1.8e-51 168.3 163.5 8 19 2.2e-05 0.023 15.5 2.5 1 23 337 359 337 360 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF443-201 - 671 1.8e-51 168.3 163.5 9 19 1.1e-06 0.0012 19.5 3.0 1 23 365 387 365 388 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF443-201 - 671 1.8e-51 168.3 163.5 10 19 9.7e-05 0.1 13.5 2.0 1 23 393 415 393 416 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF443-201 - 671 1.8e-51 168.3 163.5 11 19 3.1e-05 0.033 15.0 2.0 1 23 421 443 421 444 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF443-201 - 671 1.8e-51 168.3 163.5 12 19 1.1e-05 0.012 16.4 1.1 1 23 449 471 449 472 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF443-201 - 671 1.8e-51 168.3 163.5 13 19 4.1 4.3e+03 -0.9 1.9 2 23 478 498 477 499 0.66 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF443-201 - 671 1.8e-51 168.3 163.5 14 19 4.7e-06 0.0049 17.6 2.1 1 23 504 526 504 527 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF443-201 - 671 1.8e-51 168.3 163.5 15 19 0.0015 1.6 9.8 1.3 1 23 532 554 532 555 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF443-201 - 671 1.8e-51 168.3 163.5 16 19 0.0011 1.2 10.2 1.9 1 23 560 582 560 583 0.90 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF443-201 - 671 1.8e-51 168.3 163.5 17 19 6.3e-06 0.0066 17.2 1.3 1 23 588 610 588 611 0.83 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF443-201 - 671 1.8e-51 168.3 163.5 18 19 7.7e-07 0.00081 20.0 2.0 1 23 616 638 616 639 0.97 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF443-201 - 671 1.8e-51 168.3 163.5 19 19 1.2e-06 0.0013 19.4 2.1 1 23 649 671 649 671 0.98 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF443-201 - 671 2e-33 113.7 143.7 1 17 9.3e-07 0.00098 19.1 0.3 2 22 169 189 169 190 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF443-201 - 671 2e-33 113.7 143.7 2 17 0.015 16 5.7 0.8 2 11 197 206 197 206 0.96 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF443-201 - 671 2e-33 113.7 143.7 3 17 0.0015 1.6 8.8 1.9 2 12 225 235 225 248 0.86 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF443-201 - 671 2e-33 113.7 143.7 4 17 0.00065 0.69 10.0 1.5 2 12 253 263 253 276 0.85 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF443-201 - 671 2e-33 113.7 143.7 5 17 0.0017 1.8 8.6 1.3 2 12 281 291 281 291 0.95 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF443-201 - 671 2e-33 113.7 143.7 6 17 0.003 3.2 7.9 0.9 2 24 309 331 309 334 0.74 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF443-201 - 671 2e-33 113.7 143.7 7 17 0.0064 6.8 6.8 2.8 2 24 337 359 337 361 0.86 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF443-201 - 671 2e-33 113.7 143.7 8 17 0.005 5.3 7.2 2.7 2 24 365 387 365 390 0.79 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF443-201 - 671 2e-33 113.7 143.7 9 17 0.0079 8.4 6.5 0.9 2 12 393 403 393 416 0.75 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF443-201 - 671 2e-33 113.7 143.7 10 17 0.00061 0.64 10.1 0.8 2 13 421 432 421 444 0.92 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF443-201 - 671 2e-33 113.7 143.7 11 17 0.0014 1.5 8.9 1.4 2 24 449 471 449 474 0.90 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF443-201 - 671 2e-33 113.7 143.7 12 17 4.4e-06 0.0047 16.9 2.5 2 24 504 526 504 529 0.95 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF443-201 - 671 2e-33 113.7 143.7 13 17 7e-05 0.073 13.1 1.1 2 24 532 554 532 557 0.88 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF443-201 - 671 2e-33 113.7 143.7 14 17 0.00042 0.44 10.6 0.2 2 12 560 570 560 573 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF443-201 - 671 2e-33 113.7 143.7 15 17 0.00097 1 9.4 1.9 2 24 588 610 587 613 0.86 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF443-201 - 671 2e-33 113.7 143.7 16 17 2.7e-09 2.8e-06 27.2 5.3 2 27 616 641 616 641 0.97 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF443-201 - 671 2e-33 113.7 143.7 17 17 9.6e-08 0.0001 22.2 4.8 2 24 649 671 649 671 0.99 C2H2-type zinc finger KRAB PF01352.27 42 ZNF443-201 - 671 1.2e-18 66.4 0.1 1 1 2e-21 2.1e-18 65.7 0.1 1 39 3 41 3 43 0.95 KRAB box zf-C2H2_jaz PF12171.8 27 ZNF443-201 - 671 4.6e-15 55.5 110.7 1 19 0.71 7.5e+02 0.6 0.2 9 22 148 161 147 161 0.82 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF443-201 - 671 4.6e-15 55.5 110.7 2 19 0.0003 0.31 11.4 0.0 2 21 169 188 168 189 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF443-201 - 671 4.6e-15 55.5 110.7 3 19 0.015 15 6.0 0.2 2 23 197 218 196 219 0.85 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF443-201 - 671 4.6e-15 55.5 110.7 4 19 0.078 82 3.7 1.8 2 23 225 246 224 247 0.84 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF443-201 - 671 4.6e-15 55.5 110.7 5 19 0.15 1.6e+02 2.7 0.9 2 22 253 273 252 275 0.74 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF443-201 - 671 4.6e-15 55.5 110.7 6 19 0.029 31 5.0 1.4 2 23 281 302 280 303 0.87 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF443-201 - 671 4.6e-15 55.5 110.7 7 19 0.004 4.2 7.8 0.1 2 24 309 331 308 332 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF443-201 - 671 4.6e-15 55.5 110.7 8 19 0.021 22 5.5 0.3 2 21 337 356 336 357 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF443-201 - 671 4.6e-15 55.5 110.7 9 19 0.00023 0.24 11.7 0.6 2 24 365 387 364 387 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF443-201 - 671 4.6e-15 55.5 110.7 10 19 0.026 27 5.2 0.1 2 21 393 412 392 413 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF443-201 - 671 4.6e-15 55.5 110.7 11 19 0.00033 0.34 11.2 0.2 2 24 421 443 420 443 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF443-201 - 671 4.6e-15 55.5 110.7 12 19 0.039 41 4.6 0.2 2 24 449 471 448 471 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF443-201 - 671 4.6e-15 55.5 110.7 13 19 6 6.4e+03 -2.4 0.5 16 24 490 498 490 498 0.79 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF443-201 - 671 4.6e-15 55.5 110.7 14 19 0.024 25 5.3 0.5 2 23 504 525 503 526 0.81 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF443-201 - 671 4.6e-15 55.5 110.7 15 19 0.014 14 6.1 0.4 2 21 532 551 531 552 0.84 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF443-201 - 671 4.6e-15 55.5 110.7 16 19 0.1 1.1e+02 3.2 0.2 2 12 560 570 559 570 0.88 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF443-201 - 671 4.6e-15 55.5 110.7 17 19 0.00029 0.31 11.4 0.5 2 24 588 610 587 610 0.95 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF443-201 - 671 4.6e-15 55.5 110.7 18 19 7.4e-05 0.078 13.3 1.8 2 24 616 638 615 641 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF443-201 - 671 4.6e-15 55.5 110.7 19 19 8e-05 0.084 13.2 0.8 2 24 649 671 648 671 0.94 Zinc-finger double-stranded RNA-binding Zn-ribbon_8 PF09723.10 40 ZNF443-201 - 671 7.1e-14 51.6 92.0 1 17 5.3 5.6e+03 -2.4 0.0 9 20 78 89 73 94 0.79 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF443-201 - 671 7.1e-14 51.6 92.0 2 17 0.0052 5.5 7.2 0.1 6 18 169 181 168 194 0.83 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF443-201 - 671 7.1e-14 51.6 92.0 3 17 0.0019 2.1 8.6 2.6 6 34 197 232 196 235 0.81 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF443-201 - 671 7.1e-14 51.6 92.0 4 17 0.064 67 3.7 6.4 6 34 225 260 224 263 0.80 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF443-201 - 671 7.1e-14 51.6 92.0 5 17 0.18 1.9e+02 2.2 5.8 6 34 253 288 252 291 0.77 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF443-201 - 671 7.1e-14 51.6 92.0 6 17 0.01 11 6.3 5.3 6 34 281 316 279 321 0.80 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF443-201 - 671 7.1e-14 51.6 92.0 7 17 0.00035 0.37 10.9 3.1 6 34 309 344 308 344 0.75 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF443-201 - 671 7.1e-14 51.6 92.0 8 17 0.00061 0.65 10.2 1.9 6 33 337 371 336 372 0.70 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF443-201 - 671 7.1e-14 51.6 92.0 9 17 0.004 4.2 7.6 4.6 7 36 366 402 365 406 0.71 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF443-201 - 671 7.1e-14 51.6 92.0 10 17 0.00085 0.9 9.7 1.4 6 34 393 428 392 432 0.75 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF443-201 - 671 7.1e-14 51.6 92.0 11 17 0.0029 3.1 8.0 2.7 7 36 422 458 421 462 0.73 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF443-201 - 671 7.1e-14 51.6 92.0 12 17 0.012 12 6.1 0.2 6 19 449 462 448 472 0.74 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF443-201 - 671 7.1e-14 51.6 92.0 13 17 0.0025 2.6 8.2 6.0 6 33 504 538 503 541 0.70 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF443-201 - 671 7.1e-14 51.6 92.0 14 17 0.017 18 5.5 6.2 6 34 532 567 531 570 0.84 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF443-201 - 671 7.1e-14 51.6 92.0 15 17 1.5e-05 0.016 15.3 4.5 6 35 560 596 559 602 0.80 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF443-201 - 671 7.1e-14 51.6 92.0 16 17 0.00066 0.7 10.1 0.1 6 25 616 635 615 640 0.84 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF443-201 - 671 7.1e-14 51.6 92.0 17 17 0.00072 0.75 10.0 0.2 6 25 649 668 648 671 0.83 Zinc ribbon domain zf-C2H2_11 PF16622.5 29 ZNF443-201 - 671 5.6e-13 48.4 88.8 1 15 3.4e-06 0.0036 17.0 0.2 7 24 171 188 169 190 0.93 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF443-201 - 671 5.6e-13 48.4 88.8 2 15 0.37 3.9e+02 0.9 0.2 5 14 197 206 195 209 0.82 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF443-201 - 671 5.6e-13 48.4 88.8 3 15 1.9 2e+03 -1.4 0.5 7 23 227 243 224 245 0.74 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF443-201 - 671 5.6e-13 48.4 88.8 4 15 4.5 4.7e+03 -2.5 0.3 6 10 282 286 280 290 0.73 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF443-201 - 671 5.6e-13 48.4 88.8 5 15 5.9e-06 0.0062 16.3 0.2 7 23 311 327 307 329 0.94 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF443-201 - 671 5.6e-13 48.4 88.8 6 15 0.0045 4.8 7.0 2.1 7 25 339 357 336 359 0.93 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF443-201 - 671 5.6e-13 48.4 88.8 7 15 0.18 1.9e+02 1.9 0.6 5 23 365 383 362 386 0.87 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF443-201 - 671 5.6e-13 48.4 88.8 8 15 0.28 2.9e+02 1.3 1.9 6 26 394 414 391 415 0.90 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF443-201 - 671 5.6e-13 48.4 88.8 9 15 0.37 3.9e+02 0.9 0.1 5 23 421 439 418 441 0.73 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF443-201 - 671 5.6e-13 48.4 88.8 10 15 1.7e-05 0.018 14.8 0.3 5 23 449 467 446 469 0.94 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF443-201 - 671 5.6e-13 48.4 88.8 11 15 0.0061 6.5 6.6 0.3 6 24 505 523 502 525 0.91 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF443-201 - 671 5.6e-13 48.4 88.8 12 15 0.1 1.1e+02 2.7 0.4 6 26 561 581 558 582 0.81 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF443-201 - 671 5.6e-13 48.4 88.8 13 15 0.033 35 4.3 0.2 4 18 587 601 585 607 0.79 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF443-201 - 671 5.6e-13 48.4 88.8 14 15 7.7e-06 0.0082 15.9 0.2 5 23 616 634 613 636 0.90 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF443-201 - 671 5.6e-13 48.4 88.8 15 15 7.7e-06 0.0082 15.9 0.2 5 23 649 667 646 669 0.90 zinc-finger C2H2-type zf-trcl PF13451.6 48 ZNF443-201 - 671 9.8e-09 35.0 73.0 1 12 0.062 65 3.5 0.1 3 14 167 178 166 181 0.89 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF443-201 - 671 9.8e-09 35.0 73.0 2 12 0.013 14 5.7 0.0 2 16 194 208 193 211 0.88 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF443-201 - 671 9.8e-09 35.0 73.0 3 12 0.0096 10 6.1 0.1 3 18 223 238 221 240 0.88 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF443-201 - 671 9.8e-09 35.0 73.0 4 12 0.016 17 5.4 4.1 3 42 251 289 249 292 0.78 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF443-201 - 671 9.8e-09 35.0 73.0 5 12 0.0053 5.6 6.9 0.0 3 14 307 318 305 327 0.87 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF443-201 - 671 9.8e-09 35.0 73.0 6 12 0.0023 2.5 8.1 0.4 2 39 334 370 333 374 0.86 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF443-201 - 671 9.8e-09 35.0 73.0 7 12 0.16 1.7e+02 2.2 0.1 3 12 391 400 389 404 0.84 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF443-201 - 671 9.8e-09 35.0 73.0 8 12 1.2e-05 0.012 15.4 0.9 2 44 418 459 417 463 0.83 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF443-201 - 671 9.8e-09 35.0 73.0 9 12 0.75 7.9e+02 0.1 6.7 3 42 502 540 500 543 0.63 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF443-201 - 671 9.8e-09 35.0 73.0 10 12 0.0066 7 6.6 0.1 3 16 558 571 556 573 0.89 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF443-201 - 671 9.8e-09 35.0 73.0 11 12 0.078 83 3.2 3.2 3 40 586 622 584 624 0.75 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF443-201 - 671 9.8e-09 35.0 73.0 12 12 0.29 3.1e+02 1.4 4.8 4 40 615 655 612 658 0.68 Probable zinc-ribbon domain zf_UBZ PF18439.1 32 ZNF443-201 - 671 1.9e-08 33.7 76.0 1 17 0.0016 1.7 8.3 0.1 3 20 169 187 167 188 0.83 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF443-201 - 671 1.9e-08 33.7 76.0 2 17 1.1 1.1e+03 -0.7 0.1 3 11 197 205 195 206 0.85 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF443-201 - 671 1.9e-08 33.7 76.0 3 17 0.097 1e+02 2.6 0.2 3 13 225 235 223 244 0.83 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF443-201 - 671 1.9e-08 33.7 76.0 4 17 0.041 44 3.8 0.2 3 14 253 264 251 272 0.83 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF443-201 - 671 1.9e-08 33.7 76.0 5 17 0.017 18 5.0 0.9 3 15 281 293 279 299 0.89 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF443-201 - 671 1.9e-08 33.7 76.0 6 17 0.00016 0.17 11.5 0.1 3 21 309 328 307 328 0.92 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF443-201 - 671 1.9e-08 33.7 76.0 7 17 0.0078 8.2 6.1 0.2 3 20 337 355 335 356 0.78 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF443-201 - 671 1.9e-08 33.7 76.0 8 17 0.015 16 5.2 1.0 3 21 365 384 363 384 0.92 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF443-201 - 671 1.9e-08 33.7 76.0 9 17 0.0094 9.9 5.9 0.3 3 20 393 411 391 412 0.84 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF443-201 - 671 1.9e-08 33.7 76.0 10 17 2.4 2.6e+03 -1.9 0.1 4 12 422 430 420 435 0.85 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF443-201 - 671 1.9e-08 33.7 76.0 11 17 0.031 33 4.2 0.1 3 15 449 461 447 468 0.75 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF443-201 - 671 1.9e-08 33.7 76.0 12 17 0.016 17 5.1 0.1 3 13 504 514 502 520 0.86 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF443-201 - 671 1.9e-08 33.7 76.0 13 17 1.1 1.1e+03 -0.7 0.3 3 12 532 541 530 544 0.85 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF443-201 - 671 1.9e-08 33.7 76.0 14 17 0.027 29 4.4 0.2 3 13 560 570 558 571 0.87 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF443-201 - 671 1.9e-08 33.7 76.0 15 17 0.0019 2.1 8.0 0.2 2 15 587 600 586 607 0.81 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF443-201 - 671 1.9e-08 33.7 76.0 16 17 0.013 14 5.4 0.1 3 14 616 627 614 634 0.84 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF443-201 - 671 1.9e-08 33.7 76.0 17 17 0.013 14 5.4 0.1 3 14 649 660 647 667 0.84 Ubiquitin-Binding Zinc Finger # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF443-201.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF443-201.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF443-201.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF443-201.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF443-201.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:06:40 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- KRAB PF01352.27 42 ZNF443-202 - 64 2.5e-20 71.8 0.1 1 1 3.7e-24 3.3e-20 71.5 0.1 1 40 3 42 3 43 0.95 KRAB box # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF443-202.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF443-202.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF443-202.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF443-202.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF443-202.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:06:41 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- SCAN PF02023.17 90 ZNF444-201 - 327 2.3e-33 113.9 0.1 1 1 3.6e-36 4.1e-33 113.1 0.1 6 83 21 98 17 103 0.97 SCAN domain zf-C2H2 PF00096.26 23 ZNF444-201 - 327 4.6e-14 52.0 32.9 1 4 0.00022 0.24 11.9 1.3 2 23 180 201 179 201 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF444-201 - 327 4.6e-14 52.0 32.9 2 4 1.6e-08 1.8e-05 24.9 3.6 1 23 207 229 207 229 0.95 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF444-201 - 327 4.6e-14 52.0 32.9 3 4 0.0002 0.23 12.0 6.4 2 23 251 272 250 272 0.95 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF444-201 - 327 4.6e-14 52.0 32.9 4 4 9.9e-07 0.0011 19.3 0.4 1 23 278 300 278 300 0.97 Zinc finger, C2H2 type zf-H2C2_2 PF13465.6 26 ZNF444-201 - 327 4.9e-13 48.9 36.7 1 5 0.065 72 4.1 0.1 17 24 181 188 173 190 0.90 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF444-201 - 327 4.9e-13 48.9 36.7 2 5 4e-10 4.5e-07 30.0 2.5 1 25 193 217 193 218 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF444-201 - 327 4.9e-13 48.9 36.7 3 5 0.028 31 5.2 7.1 1 24 221 259 221 260 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF444-201 - 327 4.9e-13 48.9 36.7 4 5 2.2e-09 2.5e-06 27.7 0.5 1 25 264 288 264 289 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF444-201 - 327 4.9e-13 48.9 36.7 5 5 6 6.7e+03 -2.2 1.3 4 9 295 300 292 301 0.86 Zinc-finger double domain zf-C2H2_4 PF13894.6 24 ZNF444-201 - 327 8.6e-09 35.5 30.7 1 4 0.00011 0.12 13.2 1.3 2 23 180 201 179 202 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF444-201 - 327 8.6e-09 35.5 30.7 2 4 8.3e-07 0.00093 19.8 2.0 1 23 207 229 207 230 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF444-201 - 327 8.6e-09 35.5 30.7 3 4 0.0019 2.1 9.4 6.2 1 23 250 272 250 273 0.91 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF444-201 - 327 8.6e-09 35.5 30.7 4 4 0.0031 3.5 8.7 0.4 2 23 279 300 278 301 0.88 C2H2-type zinc finger # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF444-201.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF444-201.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF444-201.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF444-201.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF444-201.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:06:41 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF444-202.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF444-202.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF444-202.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF444-202.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF444-202.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:06:41 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- SCAN PF02023.17 90 ZNF444-203 - 101 1.5e-34 117.7 0.3 1 1 2e-38 1.8e-34 117.4 0.3 6 84 21 99 17 101 0.97 SCAN domain # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF444-203.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF444-203.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF444-203.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF444-203.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF444-203.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:06:42 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-C2H2 PF00096.26 23 ZNF444-204 - 296 2.6e-14 52.8 32.9 1 4 0.00018 0.21 12.1 1.3 2 23 149 170 148 170 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF444-204 - 296 2.6e-14 52.8 32.9 2 4 1.3e-08 1.6e-05 25.1 3.6 1 23 176 198 176 198 0.95 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF444-204 - 296 2.6e-14 52.8 32.9 3 4 0.00017 0.2 12.2 6.4 2 23 220 241 219 241 0.95 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF444-204 - 296 2.6e-14 52.8 32.9 4 4 8.2e-07 0.00098 19.5 0.4 1 23 247 269 247 269 0.97 Zinc finger, C2H2 type zf-H2C2_2 PF13465.6 26 ZNF444-204 - 296 7.2e-13 48.3 37.6 1 5 0.054 65 4.2 0.1 17 24 150 157 141 159 0.90 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF444-204 - 296 7.2e-13 48.3 37.6 2 5 3.3e-10 4e-07 30.2 2.5 1 25 162 186 162 187 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF444-204 - 296 7.2e-13 48.3 37.6 3 5 0.035 42 4.8 7.7 1 24 190 228 190 229 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF444-204 - 296 7.2e-13 48.3 37.6 4 5 1.8e-09 2.2e-06 27.8 0.5 1 25 233 257 233 258 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF444-204 - 296 7.2e-13 48.3 37.6 5 5 5 6e+03 -2.0 1.3 4 9 264 269 261 270 0.86 Zinc-finger double domain zf-C2H2_4 PF13894.6 24 ZNF444-204 - 296 4.5e-09 36.4 30.7 1 4 9e-05 0.11 13.4 1.3 2 23 149 170 148 171 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF444-204 - 296 4.5e-09 36.4 30.7 2 4 6.9e-07 0.00082 20.0 2.0 1 23 176 198 176 199 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF444-204 - 296 4.5e-09 36.4 30.7 3 4 0.0016 1.9 9.6 6.2 1 23 219 241 219 242 0.91 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF444-204 - 296 4.5e-09 36.4 30.7 4 4 0.0026 3.1 8.9 0.4 2 23 248 269 247 270 0.88 C2H2-type zinc finger # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF444-204.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF444-204.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF444-204.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF444-204.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF444-204.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:06:42 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF444-205.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF444-205.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF444-205.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF444-205.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF444-205.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:06:42 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF444-206.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF444-206.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF444-206.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF444-206.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF444-206.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:06:43 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF444-207.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF444-207.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF444-207.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF444-207.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF444-207.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:06:43 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF444-208.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF444-208.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF444-208.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF444-208.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF444-208.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:06:43 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF444-209.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF444-209.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF444-209.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF444-209.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF444-209.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:06:44 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF444-210.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF444-210.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF444-210.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF444-210.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF444-210.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:06:44 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- SCAN PF02023.17 90 ZNF444-211 - 326 2.2e-33 113.9 0.1 1 1 3.6e-36 4.1e-33 113.1 0.1 6 83 21 98 17 103 0.97 SCAN domain zf-C2H2 PF00096.26 23 ZNF444-211 - 326 4.6e-14 52.0 32.9 1 4 0.00022 0.24 11.9 1.3 2 23 179 200 178 200 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF444-211 - 326 4.6e-14 52.0 32.9 2 4 1.6e-08 1.8e-05 24.9 3.6 1 23 206 228 206 228 0.95 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF444-211 - 326 4.6e-14 52.0 32.9 3 4 0.0002 0.23 12.0 6.4 2 23 250 271 249 271 0.95 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF444-211 - 326 4.6e-14 52.0 32.9 4 4 9.9e-07 0.0011 19.3 0.4 1 23 277 299 277 299 0.97 Zinc finger, C2H2 type zf-H2C2_2 PF13465.6 26 ZNF444-211 - 326 4.8e-13 48.9 36.7 1 5 0.064 72 4.1 0.1 17 24 180 187 172 189 0.90 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF444-211 - 326 4.8e-13 48.9 36.7 2 5 4e-10 4.5e-07 30.0 2.5 1 25 192 216 192 217 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF444-211 - 326 4.8e-13 48.9 36.7 3 5 0.028 31 5.2 7.1 1 24 220 258 220 259 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF444-211 - 326 4.8e-13 48.9 36.7 4 5 2.2e-09 2.5e-06 27.7 0.5 1 25 263 287 263 288 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF444-211 - 326 4.8e-13 48.9 36.7 5 5 6 6.7e+03 -2.2 1.3 4 9 294 299 291 300 0.86 Zinc-finger double domain zf-C2H2_4 PF13894.6 24 ZNF444-211 - 326 8.4e-09 35.5 30.7 1 4 0.00011 0.12 13.3 1.3 2 23 179 200 178 201 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF444-211 - 326 8.4e-09 35.5 30.7 2 4 8.3e-07 0.00093 19.8 2.0 1 23 206 228 206 229 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF444-211 - 326 8.4e-09 35.5 30.7 3 4 0.0019 2.1 9.4 6.2 1 23 249 271 249 272 0.91 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF444-211 - 326 8.4e-09 35.5 30.7 4 4 0.0031 3.5 8.7 0.4 2 23 278 299 277 300 0.88 C2H2-type zinc finger # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF444-211.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF444-211.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF444-211.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF444-211.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF444-211.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:06:44 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZNF445-201 - 1031 3.4e-63 207.4 130.7 1 18 0.076 1.1e+02 3.4 5.7 6 26 476 496 443 496 0.74 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF445-201 - 1031 3.4e-63 207.4 130.7 2 18 7.5e-09 1.1e-05 25.6 2.0 1 24 499 522 499 523 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF445-201 - 1031 3.4e-63 207.4 130.7 3 18 6.9e-10 1e-06 28.9 2.5 3 25 529 551 527 552 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF445-201 - 1031 3.4e-63 207.4 130.7 4 18 0.00013 0.2 12.1 1.5 4 24 586 606 582 608 0.88 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF445-201 - 1031 3.4e-63 207.4 130.7 5 18 3.8e-09 5.7e-06 26.5 3.4 5 24 615 634 613 635 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF445-201 - 1031 3.4e-63 207.4 130.7 6 18 0.00017 0.26 11.8 0.4 1 24 639 662 639 664 0.84 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF445-201 - 1031 3.4e-63 207.4 130.7 7 18 0.0041 6.1 7.5 0.3 11 26 677 692 676 692 0.90 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF445-201 - 1031 3.4e-63 207.4 130.7 8 18 3.8e-11 5.7e-08 32.8 0.1 2 25 696 719 695 720 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF445-201 - 1031 3.4e-63 207.4 130.7 9 18 4.4e-06 0.0066 16.8 0.8 8 26 755 773 753 773 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF445-201 - 1031 3.4e-63 207.4 130.7 10 18 2.8e-10 4.2e-07 30.1 0.5 5 24 780 799 777 800 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF445-201 - 1031 3.4e-63 207.4 130.7 11 18 0.024 36 5.0 0.8 1 18 804 821 804 826 0.90 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF445-201 - 1031 3.4e-63 207.4 130.7 12 18 0.0012 1.8 9.2 0.2 10 26 835 851 834 851 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF445-201 - 1031 3.4e-63 207.4 130.7 13 18 1.5e-07 0.00023 21.4 0.2 4 25 857 878 855 879 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF445-201 - 1031 3.4e-63 207.4 130.7 14 18 9.3e-06 0.014 15.8 0.2 2 24 883 905 882 906 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF445-201 - 1031 3.4e-63 207.4 130.7 15 18 0.13 2e+02 2.7 0.1 2 10 911 919 910 925 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF445-201 - 1031 3.4e-63 207.4 130.7 16 18 0.0099 15 6.2 2.1 12 25 975 988 972 989 0.83 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF445-201 - 1031 3.4e-63 207.4 130.7 17 18 9.1e-09 1.4e-05 25.3 3.2 2 24 993 1015 992 1016 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF445-201 - 1031 3.4e-63 207.4 130.7 18 18 0.094 1.4e+02 3.2 0.4 1 9 1020 1028 1020 1031 0.90 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZNF445-201 - 1031 6.6e-51 168.0 145.1 1 17 0.23 3.5e+02 2.0 0.2 4 15 415 426 415 426 0.87 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF445-201 - 1031 6.6e-51 168.0 145.1 2 17 1.6 2.4e+03 -0.7 0.1 5 15 461 471 459 473 0.81 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF445-201 - 1031 6.6e-51 168.0 145.1 3 17 3.2e-08 4.8e-05 23.6 5.4 1 23 485 507 485 507 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF445-201 - 1031 6.6e-51 168.0 145.1 4 17 0.0008 1.2 9.7 1.8 1 23 513 535 513 535 0.91 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF445-201 - 1031 6.6e-51 168.0 145.1 5 17 2.8e-06 0.0042 17.4 1.1 1 23 541 563 541 563 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF445-201 - 1031 6.6e-51 168.0 145.1 6 17 0.18 2.6e+02 2.4 6.0 1 23 597 619 597 619 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF445-201 - 1031 6.6e-51 168.0 145.1 7 17 2.4e-06 0.0036 17.7 5.4 1 23 625 647 625 647 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF445-201 - 1031 6.6e-51 168.0 145.1 8 17 1.4e-07 0.00021 21.6 1.3 2 23 682 703 681 703 0.95 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF445-201 - 1031 6.6e-51 168.0 145.1 9 17 4.5e-07 0.00067 20.0 0.8 1 23 709 731 709 731 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF445-201 - 1031 6.6e-51 168.0 145.1 10 17 3.8e-07 0.00056 20.2 2.4 1 23 762 784 762 784 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF445-201 - 1031 6.6e-51 168.0 145.1 11 17 1.9e-07 0.00028 21.2 1.2 1 23 790 812 790 812 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF445-201 - 1031 6.6e-51 168.0 145.1 12 17 2.2e-05 0.033 14.6 0.6 3 23 842 862 840 862 0.92 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF445-201 - 1031 6.6e-51 168.0 145.1 13 17 9.6e-08 0.00014 22.1 1.3 1 23 868 890 868 890 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF445-201 - 1031 6.6e-51 168.0 145.1 14 17 2.2e-06 0.0033 17.8 2.3 1 23 896 918 896 918 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF445-201 - 1031 6.6e-51 168.0 145.1 15 17 5 7.4e+03 -2.2 0.1 5 16 954 965 953 966 0.83 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF445-201 - 1031 6.6e-51 168.0 145.1 16 17 4.4e-07 0.00065 20.0 3.8 1 23 978 1000 978 1000 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF445-201 - 1031 6.6e-51 168.0 145.1 17 17 7.8e-08 0.00012 22.4 2.0 1 23 1006 1028 1006 1028 0.98 Zinc finger, C2H2 type SCAN PF02023.17 90 ZNF445-201 - 1031 2.2e-36 123.5 1.6 1 1 4.4e-39 6.6e-36 122.0 1.6 1 87 51 137 51 140 0.97 SCAN domain zf-C2H2_4 PF13894.6 24 ZNF445-201 - 1031 1.6e-32 109.4 130.7 1 15 2 2.9e+03 -0.4 0.1 5 14 461 470 460 474 0.67 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF445-201 - 1031 1.6e-32 109.4 130.7 2 15 0.00022 0.33 11.9 4.2 1 23 485 507 485 508 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF445-201 - 1031 1.6e-32 109.4 130.7 3 15 0.0036 5.3 8.1 2.4 1 23 513 535 513 536 0.83 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF445-201 - 1031 1.6e-32 109.4 130.7 4 15 9.2e-05 0.14 13.1 0.6 1 23 541 563 541 564 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF445-201 - 1031 1.6e-32 109.4 130.7 5 15 0.0038 5.7 8.1 5.2 3 23 599 619 597 620 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF445-201 - 1031 1.6e-32 109.4 130.7 6 15 0.00037 0.55 11.2 3.1 1 23 625 647 625 648 0.91 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF445-201 - 1031 1.6e-32 109.4 130.7 7 15 3.5e-06 0.0052 17.5 0.9 1 23 681 703 681 704 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF445-201 - 1031 1.6e-32 109.4 130.7 8 15 1.7e-05 0.025 15.4 0.5 1 23 709 731 709 732 0.97 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF445-201 - 1031 1.6e-32 109.4 130.7 9 15 7.2e-05 0.11 13.4 2.0 1 23 762 784 762 785 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF445-201 - 1031 1.6e-32 109.4 130.7 10 15 0.00023 0.34 11.9 1.1 1 23 790 812 790 813 0.90 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF445-201 - 1031 1.6e-32 109.4 130.7 11 15 1.6e-05 0.024 15.4 0.6 1 23 840 862 840 863 0.91 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF445-201 - 1031 1.6e-32 109.4 130.7 12 15 8.3e-06 0.012 16.3 0.6 1 23 868 890 868 891 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF445-201 - 1031 1.6e-32 109.4 130.7 13 15 3.4e-05 0.05 14.5 2.3 1 23 896 918 896 919 0.97 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF445-201 - 1031 1.6e-32 109.4 130.7 14 15 1.9e-05 0.029 15.2 2.8 1 23 978 1000 978 1001 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF445-201 - 1031 1.6e-32 109.4 130.7 15 15 4.5e-06 0.0067 17.2 1.1 1 23 1006 1028 1006 1029 0.92 C2H2-type zinc finger KRAB PF01352.27 42 ZNF445-201 - 1031 1.2e-21 76.0 0.9 1 2 5.8 8.7e+03 -3.5 0.1 17 26 128 137 125 138 0.86 KRAB box KRAB PF01352.27 42 ZNF445-201 - 1031 1.2e-21 76.0 0.9 2 2 8.3e-25 1.2e-21 76.0 0.9 2 41 234 273 233 273 0.98 KRAB box zf-C2H2_6 PF13912.6 27 ZNF445-201 - 1031 1.7e-10 40.6 99.6 1 15 2.6 3.9e+03 -2.0 0.1 5 12 460 467 460 467 0.87 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF445-201 - 1031 1.7e-10 40.6 99.6 2 15 0.05 75 3.5 1.2 2 12 485 495 484 496 0.92 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF445-201 - 1031 1.7e-10 40.6 99.6 3 15 0.007 10 6.2 0.5 1 12 512 523 512 523 0.91 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF445-201 - 1031 1.7e-10 40.6 99.6 4 15 0.00033 0.49 10.4 1.3 2 26 541 565 541 566 0.91 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF445-201 - 1031 1.7e-10 40.6 99.6 5 15 0.036 53 4.0 1.2 2 12 597 607 596 607 0.89 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF445-201 - 1031 1.7e-10 40.6 99.6 6 15 0.015 23 5.2 0.9 2 12 625 635 625 650 0.78 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF445-201 - 1031 1.7e-10 40.6 99.6 7 15 0.001 1.5 8.9 0.4 2 13 681 692 680 703 0.82 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF445-201 - 1031 1.7e-10 40.6 99.6 8 15 0.0092 14 5.8 0.9 2 24 709 731 709 732 0.95 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF445-201 - 1031 1.7e-10 40.6 99.6 9 15 0.0023 3.4 7.8 0.7 2 12 762 772 762 772 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF445-201 - 1031 1.7e-10 40.6 99.6 10 15 0.01 16 5.7 0.2 2 12 790 800 790 809 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF445-201 - 1031 1.7e-10 40.6 99.6 11 15 0.0024 3.6 7.7 0.1 2 12 840 850 839 858 0.90 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF445-201 - 1031 1.7e-10 40.6 99.6 12 15 0.004 6 7.0 0.3 1 11 867 877 867 891 0.82 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF445-201 - 1031 1.7e-10 40.6 99.6 13 15 0.044 66 3.7 0.4 2 11 896 905 896 905 0.96 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF445-201 - 1031 1.7e-10 40.6 99.6 14 15 3.9e-05 0.058 13.4 5.4 2 24 978 1000 977 1003 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF445-201 - 1031 1.7e-10 40.6 99.6 15 15 4.2e-05 0.062 13.3 1.1 2 24 1006 1028 1006 1030 0.97 C2H2-type zinc finger Zn-ribbon_8 PF09723.10 40 ZNF445-201 - 1031 3e-08 33.6 64.1 1 13 0.00072 1.1 9.5 2.1 6 35 485 521 484 524 0.80 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF445-201 - 1031 3e-08 33.6 64.1 2 13 0.021 32 4.7 2.9 6 39 513 553 512 554 0.85 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF445-201 - 1031 3e-08 33.6 64.1 3 13 0.079 1.2e+02 2.9 0.2 6 19 541 554 538 562 0.86 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF445-201 - 1031 3e-08 33.6 64.1 4 13 0.0092 14 5.9 3.5 6 35 597 633 596 638 0.84 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF445-201 - 1031 3e-08 33.6 64.1 5 13 3.9e-05 0.059 13.5 1.5 6 35 681 717 680 721 0.89 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF445-201 - 1031 3e-08 33.6 64.1 6 13 0.0046 6.9 6.9 0.3 14 36 748 771 746 774 0.63 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF445-201 - 1031 3e-08 33.6 64.1 7 13 1.5e-05 0.022 14.9 1.6 6 36 762 799 761 801 0.91 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF445-201 - 1031 3e-08 33.6 64.1 8 13 0.0052 7.7 6.7 0.6 6 22 790 812 788 827 0.72 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF445-201 - 1031 3e-08 33.6 64.1 9 13 0.017 26 5.0 0.1 6 17 840 851 834 861 0.82 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF445-201 - 1031 3e-08 33.6 64.1 10 13 0.00089 1.3 9.2 1.3 6 34 868 903 867 906 0.84 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF445-201 - 1031 3e-08 33.6 64.1 11 13 0.034 51 4.1 0.1 6 16 896 906 895 918 0.81 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF445-201 - 1031 3e-08 33.6 64.1 12 13 0.03 45 4.3 3.5 7 36 979 1015 976 1017 0.69 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF445-201 - 1031 3e-08 33.6 64.1 13 13 0.023 34 4.7 0.3 6 16 1006 1016 1005 1026 0.86 Zinc ribbon domain # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF445-201.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF445-201.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF445-201.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF445-201.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF445-201.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:06:45 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZNF445-202 - 1031 3.4e-63 207.4 130.7 1 18 0.076 1.1e+02 3.4 5.7 6 26 476 496 443 496 0.74 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF445-202 - 1031 3.4e-63 207.4 130.7 2 18 7.5e-09 1.1e-05 25.6 2.0 1 24 499 522 499 523 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF445-202 - 1031 3.4e-63 207.4 130.7 3 18 6.9e-10 1e-06 28.9 2.5 3 25 529 551 527 552 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF445-202 - 1031 3.4e-63 207.4 130.7 4 18 0.00013 0.2 12.1 1.5 4 24 586 606 582 608 0.88 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF445-202 - 1031 3.4e-63 207.4 130.7 5 18 3.8e-09 5.7e-06 26.5 3.4 5 24 615 634 613 635 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF445-202 - 1031 3.4e-63 207.4 130.7 6 18 0.00017 0.26 11.8 0.4 1 24 639 662 639 664 0.84 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF445-202 - 1031 3.4e-63 207.4 130.7 7 18 0.0041 6.1 7.5 0.3 11 26 677 692 676 692 0.90 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF445-202 - 1031 3.4e-63 207.4 130.7 8 18 3.8e-11 5.7e-08 32.8 0.1 2 25 696 719 695 720 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF445-202 - 1031 3.4e-63 207.4 130.7 9 18 4.4e-06 0.0066 16.8 0.8 8 26 755 773 753 773 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF445-202 - 1031 3.4e-63 207.4 130.7 10 18 2.8e-10 4.2e-07 30.1 0.5 5 24 780 799 777 800 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF445-202 - 1031 3.4e-63 207.4 130.7 11 18 0.024 36 5.0 0.8 1 18 804 821 804 826 0.90 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF445-202 - 1031 3.4e-63 207.4 130.7 12 18 0.0012 1.8 9.2 0.2 10 26 835 851 834 851 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF445-202 - 1031 3.4e-63 207.4 130.7 13 18 1.5e-07 0.00023 21.4 0.2 4 25 857 878 855 879 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF445-202 - 1031 3.4e-63 207.4 130.7 14 18 9.3e-06 0.014 15.8 0.2 2 24 883 905 882 906 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF445-202 - 1031 3.4e-63 207.4 130.7 15 18 0.13 2e+02 2.7 0.1 2 10 911 919 910 925 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF445-202 - 1031 3.4e-63 207.4 130.7 16 18 0.0099 15 6.2 2.1 12 25 975 988 972 989 0.83 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF445-202 - 1031 3.4e-63 207.4 130.7 17 18 9.1e-09 1.4e-05 25.3 3.2 2 24 993 1015 992 1016 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF445-202 - 1031 3.4e-63 207.4 130.7 18 18 0.094 1.4e+02 3.2 0.4 1 9 1020 1028 1020 1031 0.90 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZNF445-202 - 1031 6.6e-51 168.0 145.1 1 17 0.23 3.5e+02 2.0 0.2 4 15 415 426 415 426 0.87 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF445-202 - 1031 6.6e-51 168.0 145.1 2 17 1.6 2.4e+03 -0.7 0.1 5 15 461 471 459 473 0.81 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF445-202 - 1031 6.6e-51 168.0 145.1 3 17 3.2e-08 4.8e-05 23.6 5.4 1 23 485 507 485 507 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF445-202 - 1031 6.6e-51 168.0 145.1 4 17 0.0008 1.2 9.7 1.8 1 23 513 535 513 535 0.91 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF445-202 - 1031 6.6e-51 168.0 145.1 5 17 2.8e-06 0.0042 17.4 1.1 1 23 541 563 541 563 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF445-202 - 1031 6.6e-51 168.0 145.1 6 17 0.18 2.6e+02 2.4 6.0 1 23 597 619 597 619 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF445-202 - 1031 6.6e-51 168.0 145.1 7 17 2.4e-06 0.0036 17.7 5.4 1 23 625 647 625 647 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF445-202 - 1031 6.6e-51 168.0 145.1 8 17 1.4e-07 0.00021 21.6 1.3 2 23 682 703 681 703 0.95 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF445-202 - 1031 6.6e-51 168.0 145.1 9 17 4.5e-07 0.00067 20.0 0.8 1 23 709 731 709 731 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF445-202 - 1031 6.6e-51 168.0 145.1 10 17 3.8e-07 0.00056 20.2 2.4 1 23 762 784 762 784 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF445-202 - 1031 6.6e-51 168.0 145.1 11 17 1.9e-07 0.00028 21.2 1.2 1 23 790 812 790 812 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF445-202 - 1031 6.6e-51 168.0 145.1 12 17 2.2e-05 0.033 14.6 0.6 3 23 842 862 840 862 0.92 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF445-202 - 1031 6.6e-51 168.0 145.1 13 17 9.6e-08 0.00014 22.1 1.3 1 23 868 890 868 890 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF445-202 - 1031 6.6e-51 168.0 145.1 14 17 2.2e-06 0.0033 17.8 2.3 1 23 896 918 896 918 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF445-202 - 1031 6.6e-51 168.0 145.1 15 17 5 7.4e+03 -2.2 0.1 5 16 954 965 953 966 0.83 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF445-202 - 1031 6.6e-51 168.0 145.1 16 17 4.4e-07 0.00065 20.0 3.8 1 23 978 1000 978 1000 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF445-202 - 1031 6.6e-51 168.0 145.1 17 17 7.8e-08 0.00012 22.4 2.0 1 23 1006 1028 1006 1028 0.98 Zinc finger, C2H2 type SCAN PF02023.17 90 ZNF445-202 - 1031 2.2e-36 123.5 1.6 1 1 4.4e-39 6.6e-36 122.0 1.6 1 87 51 137 51 140 0.97 SCAN domain zf-C2H2_4 PF13894.6 24 ZNF445-202 - 1031 1.6e-32 109.4 130.7 1 15 2 2.9e+03 -0.4 0.1 5 14 461 470 460 474 0.67 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF445-202 - 1031 1.6e-32 109.4 130.7 2 15 0.00022 0.33 11.9 4.2 1 23 485 507 485 508 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF445-202 - 1031 1.6e-32 109.4 130.7 3 15 0.0036 5.3 8.1 2.4 1 23 513 535 513 536 0.83 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF445-202 - 1031 1.6e-32 109.4 130.7 4 15 9.2e-05 0.14 13.1 0.6 1 23 541 563 541 564 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF445-202 - 1031 1.6e-32 109.4 130.7 5 15 0.0038 5.7 8.1 5.2 3 23 599 619 597 620 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF445-202 - 1031 1.6e-32 109.4 130.7 6 15 0.00037 0.55 11.2 3.1 1 23 625 647 625 648 0.91 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF445-202 - 1031 1.6e-32 109.4 130.7 7 15 3.5e-06 0.0052 17.5 0.9 1 23 681 703 681 704 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF445-202 - 1031 1.6e-32 109.4 130.7 8 15 1.7e-05 0.025 15.4 0.5 1 23 709 731 709 732 0.97 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF445-202 - 1031 1.6e-32 109.4 130.7 9 15 7.2e-05 0.11 13.4 2.0 1 23 762 784 762 785 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF445-202 - 1031 1.6e-32 109.4 130.7 10 15 0.00023 0.34 11.9 1.1 1 23 790 812 790 813 0.90 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF445-202 - 1031 1.6e-32 109.4 130.7 11 15 1.6e-05 0.024 15.4 0.6 1 23 840 862 840 863 0.91 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF445-202 - 1031 1.6e-32 109.4 130.7 12 15 8.3e-06 0.012 16.3 0.6 1 23 868 890 868 891 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF445-202 - 1031 1.6e-32 109.4 130.7 13 15 3.4e-05 0.05 14.5 2.3 1 23 896 918 896 919 0.97 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF445-202 - 1031 1.6e-32 109.4 130.7 14 15 1.9e-05 0.029 15.2 2.8 1 23 978 1000 978 1001 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF445-202 - 1031 1.6e-32 109.4 130.7 15 15 4.5e-06 0.0067 17.2 1.1 1 23 1006 1028 1006 1029 0.92 C2H2-type zinc finger KRAB PF01352.27 42 ZNF445-202 - 1031 1.2e-21 76.0 0.9 1 2 5.8 8.7e+03 -3.5 0.1 17 26 128 137 125 138 0.86 KRAB box KRAB PF01352.27 42 ZNF445-202 - 1031 1.2e-21 76.0 0.9 2 2 8.3e-25 1.2e-21 76.0 0.9 2 41 234 273 233 273 0.98 KRAB box zf-C2H2_6 PF13912.6 27 ZNF445-202 - 1031 1.7e-10 40.6 99.6 1 15 2.6 3.9e+03 -2.0 0.1 5 12 460 467 460 467 0.87 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF445-202 - 1031 1.7e-10 40.6 99.6 2 15 0.05 75 3.5 1.2 2 12 485 495 484 496 0.92 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF445-202 - 1031 1.7e-10 40.6 99.6 3 15 0.007 10 6.2 0.5 1 12 512 523 512 523 0.91 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF445-202 - 1031 1.7e-10 40.6 99.6 4 15 0.00033 0.49 10.4 1.3 2 26 541 565 541 566 0.91 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF445-202 - 1031 1.7e-10 40.6 99.6 5 15 0.036 53 4.0 1.2 2 12 597 607 596 607 0.89 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF445-202 - 1031 1.7e-10 40.6 99.6 6 15 0.015 23 5.2 0.9 2 12 625 635 625 650 0.78 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF445-202 - 1031 1.7e-10 40.6 99.6 7 15 0.001 1.5 8.9 0.4 2 13 681 692 680 703 0.82 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF445-202 - 1031 1.7e-10 40.6 99.6 8 15 0.0092 14 5.8 0.9 2 24 709 731 709 732 0.95 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF445-202 - 1031 1.7e-10 40.6 99.6 9 15 0.0023 3.4 7.8 0.7 2 12 762 772 762 772 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF445-202 - 1031 1.7e-10 40.6 99.6 10 15 0.01 16 5.7 0.2 2 12 790 800 790 809 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF445-202 - 1031 1.7e-10 40.6 99.6 11 15 0.0024 3.6 7.7 0.1 2 12 840 850 839 858 0.90 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF445-202 - 1031 1.7e-10 40.6 99.6 12 15 0.004 6 7.0 0.3 1 11 867 877 867 891 0.82 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF445-202 - 1031 1.7e-10 40.6 99.6 13 15 0.044 66 3.7 0.4 2 11 896 905 896 905 0.96 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF445-202 - 1031 1.7e-10 40.6 99.6 14 15 3.9e-05 0.058 13.4 5.4 2 24 978 1000 977 1003 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF445-202 - 1031 1.7e-10 40.6 99.6 15 15 4.2e-05 0.062 13.3 1.1 2 24 1006 1028 1006 1030 0.97 C2H2-type zinc finger Zn-ribbon_8 PF09723.10 40 ZNF445-202 - 1031 3e-08 33.6 64.1 1 13 0.00072 1.1 9.5 2.1 6 35 485 521 484 524 0.80 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF445-202 - 1031 3e-08 33.6 64.1 2 13 0.021 32 4.7 2.9 6 39 513 553 512 554 0.85 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF445-202 - 1031 3e-08 33.6 64.1 3 13 0.079 1.2e+02 2.9 0.2 6 19 541 554 538 562 0.86 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF445-202 - 1031 3e-08 33.6 64.1 4 13 0.0092 14 5.9 3.5 6 35 597 633 596 638 0.84 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF445-202 - 1031 3e-08 33.6 64.1 5 13 3.9e-05 0.059 13.5 1.5 6 35 681 717 680 721 0.89 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF445-202 - 1031 3e-08 33.6 64.1 6 13 0.0046 6.9 6.9 0.3 14 36 748 771 746 774 0.63 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF445-202 - 1031 3e-08 33.6 64.1 7 13 1.5e-05 0.022 14.9 1.6 6 36 762 799 761 801 0.91 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF445-202 - 1031 3e-08 33.6 64.1 8 13 0.0052 7.7 6.7 0.6 6 22 790 812 788 827 0.72 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF445-202 - 1031 3e-08 33.6 64.1 9 13 0.017 26 5.0 0.1 6 17 840 851 834 861 0.82 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF445-202 - 1031 3e-08 33.6 64.1 10 13 0.00089 1.3 9.2 1.3 6 34 868 903 867 906 0.84 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF445-202 - 1031 3e-08 33.6 64.1 11 13 0.034 51 4.1 0.1 6 16 896 906 895 918 0.81 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF445-202 - 1031 3e-08 33.6 64.1 12 13 0.03 45 4.3 3.5 7 36 979 1015 976 1017 0.69 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF445-202 - 1031 3e-08 33.6 64.1 13 13 0.023 34 4.7 0.3 6 16 1006 1016 1005 1026 0.86 Zinc ribbon domain # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF445-202.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF445-202.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF445-202.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF445-202.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF445-202.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:06:45 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- SCAN PF02023.17 90 ZNF445-203 - 275 4.7e-37 125.7 1.6 1 1 9.1e-41 8.2e-37 124.9 1.6 1 87 51 137 51 140 0.97 SCAN domain KRAB PF01352.27 42 ZNF445-203 - 275 1.2e-23 82.4 2.4 1 2 0.15 1.3e+03 -0.9 0.1 17 26 128 137 124 139 0.83 KRAB box KRAB PF01352.27 42 ZNF445-203 - 275 1.2e-23 82.4 2.4 2 2 1.9e-27 1.7e-23 82.0 0.5 2 42 234 274 233 274 0.98 KRAB box # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF445-203.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF445-203.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF445-203.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF445-203.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF445-203.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:06:46 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- SCAN PF02023.17 90 ZNF445-204 - 174 2.9e-37 126.4 1.6 1 2 3.2e-41 2.9e-37 126.4 1.6 1 87 51 137 51 140 0.97 SCAN domain SCAN PF02023.17 90 ZNF445-204 - 174 2.9e-37 126.4 1.6 2 2 0.74 6.6e+03 -3.0 0.2 19 37 152 170 146 173 0.76 SCAN domain # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF445-204.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF445-204.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF445-204.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF445-204.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF445-204.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:06:46 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- SCAN PF02023.17 90 ZNF445-205 - 273 2.7e-31 107.2 2.8 1 1 5.5e-35 4.9e-31 106.4 2.8 1 76 50 125 50 131 0.98 SCAN domain KRAB PF01352.27 42 ZNF445-205 - 273 9.7e-24 82.7 0.5 1 1 1.9e-27 1.7e-23 82.0 0.5 2 42 232 272 231 272 0.98 KRAB box # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF445-205.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF445-205.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF445-205.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF445-205.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF445-205.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:06:46 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- SCAN PF02023.17 90 ZNF446-201 - 336 3.9e-40 135.5 0.1 1 1 3.5e-44 6.3e-40 134.9 0.1 1 87 22 108 22 111 0.98 SCAN domain # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF446-201.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF446-201.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF446-201.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF446-201.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF446-201.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:06:47 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-C2H2 PF00096.26 23 ZNF446-202 - 347 7.4e-08 32.4 19.2 1 4 3.7 4.7e+03 -1.6 0.1 3 14 52 65 51 68 0.83 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF446-202 - 347 7.4e-08 32.4 19.2 2 4 0.00018 0.23 12.0 1.1 1 23 229 251 229 251 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF446-202 - 347 7.4e-08 32.4 19.2 3 4 3.2e-06 0.0041 17.5 1.1 1 23 292 314 292 314 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF446-202 - 347 7.4e-08 32.4 19.2 4 4 3.5e-05 0.045 14.2 0.7 2 23 321 342 320 342 0.94 Zinc finger, C2H2 type # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF446-202.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF446-202.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF446-202.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF446-202.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF446-202.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:06:47 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- SCAN PF02023.17 90 ZNF446-203 - 450 6.6e-40 134.8 0.1 1 1 9.5e-43 1.1e-39 134.1 0.1 1 87 22 108 22 110 0.98 SCAN domain KRAB PF01352.27 42 ZNF446-203 - 450 3.3e-13 49.0 0.4 1 1 5.1e-16 6e-13 48.2 0.4 13 42 209 238 208 238 0.98 KRAB box zf-C2H2 PF00096.26 23 ZNF446-203 - 450 4.3e-08 33.2 15.8 1 3 0.00027 0.32 11.5 1.1 1 23 332 354 332 354 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF446-203 - 450 4.3e-08 33.2 15.8 2 3 4.7e-06 0.0056 17.1 1.1 1 23 395 417 395 417 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF446-203 - 450 4.3e-08 33.2 15.8 3 3 5.1e-05 0.061 13.8 0.7 2 23 424 445 423 445 0.94 Zinc finger, C2H2 type # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF446-203.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF446-203.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF446-203.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF446-203.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF446-203.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:06:47 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- SCAN PF02023.17 90 ZNF446-204 - 125 4.9e-41 138.4 0.1 1 1 3.6e-45 6.4e-41 138.1 0.1 1 87 22 108 22 110 0.98 SCAN domain # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF446-204.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF446-204.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF446-204.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF446-204.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF446-204.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:06:48 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- SCAN PF02023.17 90 ZNF446-205 - 399 5.3e-40 135.1 0.1 1 1 7.8e-43 9.3e-40 134.4 0.1 1 87 22 108 22 110 0.98 SCAN domain KRAB PF01352.27 42 ZNF446-205 - 399 2.8e-13 49.3 0.4 1 1 4.3e-16 5.2e-13 48.4 0.4 13 42 209 238 208 238 0.98 KRAB box zf-C2H2 PF00096.26 23 ZNF446-205 - 399 2.8e-08 33.8 15.8 1 3 0.00023 0.28 11.7 1.1 1 23 281 303 281 303 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF446-205 - 399 2.8e-08 33.8 15.8 2 3 4e-06 0.0048 17.3 1.1 1 23 344 366 344 366 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF446-205 - 399 2.8e-08 33.8 15.8 3 3 4.4e-05 0.053 14.0 0.7 2 23 373 394 372 394 0.94 Zinc finger, C2H2 type # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF446-205.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF446-205.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF446-205.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF446-205.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF446-205.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:06:48 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF446-206.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF446-206.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF446-206.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF446-206.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF446-206.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:06:48 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- SCAN PF02023.17 90 ZNF446-207 - 422 6e-40 135.0 0.1 1 1 5.7e-43 1e-39 134.2 0.1 1 87 22 108 22 110 0.98 SCAN domain KRAB PF01352.27 42 ZNF446-207 - 422 3e-13 49.2 0.4 1 1 3.1e-16 5.6e-13 48.3 0.4 13 42 209 238 208 238 0.98 KRAB box # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF446-207.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF446-207.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF446-207.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF446-207.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF446-207.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:06:49 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- SCAN PF02023.17 90 ZNF446-208 - 422 6.1e-40 135.0 0.1 1 1 8e-43 1e-39 134.2 0.1 1 87 22 108 22 110 0.98 SCAN domain zf-C2H2 PF00096.26 23 ZNF446-208 - 422 3.4e-08 33.5 15.8 1 3 0.00023 0.29 11.6 1.1 1 23 304 326 304 326 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF446-208 - 422 3.4e-08 33.5 15.8 2 3 4e-06 0.0052 17.2 1.1 1 23 367 389 367 389 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF446-208 - 422 3.4e-08 33.5 15.8 3 3 4.4e-05 0.057 13.9 0.7 2 23 396 417 395 417 0.94 Zinc finger, C2H2 type # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF446-208.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF446-208.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF446-208.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF446-208.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF446-208.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:06:49 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZNF449-201 - 518 3.2e-44 147.5 64.4 1 7 2.7e-05 0.024 15.1 6.6 5 25 313 333 311 334 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF449-201 - 518 3.2e-44 147.5 64.4 2 7 4e-09 3.6e-06 27.2 0.7 2 25 338 361 337 362 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF449-201 - 518 3.2e-44 147.5 64.4 3 7 1.2e-11 1.1e-08 35.1 1.7 1 26 365 390 365 390 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF449-201 - 518 3.2e-44 147.5 64.4 4 7 0.00024 0.21 12.1 2.9 4 24 396 416 393 417 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF449-201 - 518 3.2e-44 147.5 64.4 5 7 1.1e-10 1e-07 32.0 5.5 1 25 421 445 421 446 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF449-201 - 518 3.2e-44 147.5 64.4 6 7 1.4e-09 1.3e-06 28.6 1.2 1 25 449 473 449 474 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF449-201 - 518 3.2e-44 147.5 64.4 7 7 1.1e-10 1e-07 32.1 1.4 2 25 478 501 477 502 0.92 Zinc-finger double domain SCAN PF02023.17 90 ZNF449-201 - 518 1.6e-40 136.8 5.6 1 1 4.1e-43 3.7e-40 135.6 5.6 2 88 27 113 26 115 0.98 SCAN domain zf-C2H2 PF00096.26 23 ZNF449-201 - 518 2.1e-36 122.3 71.4 1 7 3.7e-08 3.4e-05 24.1 3.9 1 23 323 345 323 345 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF449-201 - 518 2.1e-36 122.3 71.4 2 7 4.3e-07 0.00038 20.7 3.0 1 23 351 373 351 373 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF449-201 - 518 2.1e-36 122.3 71.4 3 7 6.3e-08 5.6e-05 23.4 3.9 1 23 379 401 379 401 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF449-201 - 518 2.1e-36 122.3 71.4 4 7 4.6e-07 0.00041 20.6 5.7 1 23 407 429 407 429 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF449-201 - 518 2.1e-36 122.3 71.4 5 7 5.1e-08 4.6e-05 23.6 5.2 1 23 435 457 435 457 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF449-201 - 518 2.1e-36 122.3 71.4 6 7 5e-09 4.5e-06 26.8 0.9 1 23 463 485 463 485 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF449-201 - 518 2.1e-36 122.3 71.4 7 7 9.1e-07 0.00081 19.7 2.6 1 23 491 513 491 513 0.98 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZNF449-201 - 518 3.8e-22 77.1 65.4 1 7 1.4e-05 0.013 16.3 3.4 1 23 323 345 323 346 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF449-201 - 518 3.8e-22 77.1 65.4 2 7 3.1e-06 0.0028 18.4 2.2 1 23 351 373 351 374 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF449-201 - 518 3.8e-22 77.1 65.4 3 7 7e-06 0.0063 17.3 2.7 1 23 379 401 379 402 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF449-201 - 518 3.8e-22 77.1 65.4 4 7 2.5e-05 0.022 15.5 5.0 1 23 407 429 407 430 0.91 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF449-201 - 518 3.8e-22 77.1 65.4 5 7 0.00028 0.25 12.3 3.7 1 23 435 457 435 458 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF449-201 - 518 3.8e-22 77.1 65.4 6 7 4.4e-06 0.004 17.9 0.7 1 23 463 485 463 486 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF449-201 - 518 3.8e-22 77.1 65.4 7 7 3.5e-05 0.031 15.1 2.3 1 23 491 513 491 514 0.95 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF449-201 - 518 9.2e-15 54.2 59.1 1 7 0.006 5.4 7.1 3.1 2 24 323 345 323 348 0.89 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF449-201 - 518 9.2e-15 54.2 59.1 2 7 0.00079 0.71 9.9 0.3 2 11 351 360 351 369 0.96 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF449-201 - 518 9.2e-15 54.2 59.1 3 7 1.3e-06 0.0012 18.8 2.4 2 26 379 403 379 404 0.95 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF449-201 - 518 9.2e-15 54.2 59.1 4 7 0.0015 1.3 9.1 6.4 2 24 407 429 406 432 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF449-201 - 518 9.2e-15 54.2 59.1 5 7 7.4e-07 0.00066 19.6 3.7 2 25 435 458 435 460 0.95 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF449-201 - 518 9.2e-15 54.2 59.1 6 7 0.00022 0.2 11.7 0.2 2 12 463 473 463 485 0.89 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF449-201 - 518 9.2e-15 54.2 59.1 7 7 0.0013 1.2 9.3 1.6 2 21 491 510 491 515 0.84 C2H2-type zinc finger zf-C2H2_jaz PF12171.8 27 ZNF449-201 - 518 7.8e-07 29.2 31.2 1 7 0.04 36 4.8 0.1 2 22 323 343 322 343 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF449-201 - 518 7.8e-07 29.2 31.2 2 7 0.022 20 5.6 0.0 2 21 351 370 350 371 0.85 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF449-201 - 518 7.8e-07 29.2 31.2 3 7 0.00031 0.28 11.5 0.2 2 24 379 401 378 402 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF449-201 - 518 7.8e-07 29.2 31.2 4 7 0.016 15 6.0 4.9 2 26 407 435 406 436 0.88 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF449-201 - 518 7.8e-07 29.2 31.2 5 7 0.0057 5.1 7.5 0.3 2 24 435 457 434 457 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF449-201 - 518 7.8e-07 29.2 31.2 6 7 0.099 89 3.5 0.1 2 12 463 473 462 483 0.87 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF449-201 - 518 7.8e-07 29.2 31.2 7 7 0.0083 7.4 7.0 0.1 2 12 491 501 490 513 0.84 Zinc-finger double-stranded RNA-binding # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF449-201.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF449-201.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF449-201.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF449-201.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF449-201.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:06:50 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- SCAN PF02023.17 90 ZNF449-202 - 164 2.7e-41 139.3 5.6 1 1 2e-45 3.6e-41 138.9 5.6 2 88 27 113 26 115 0.98 SCAN domain # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF449-202.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF449-202.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF449-202.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF449-202.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF449-202.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:06:50 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZNF45-201 - 682 2.7e-126 406.9 113.1 1 18 0.00041 0.37 11.3 0.9 5 24 151 173 149 174 0.81 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF45-201 - 682 2.7e-126 406.9 113.1 2 18 2.4e-06 0.0022 18.4 0.1 8 25 185 202 175 203 0.81 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF45-201 - 682 2.7e-126 406.9 113.1 3 18 0.38 3.4e+02 1.9 0.1 1 15 206 220 206 221 0.79 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF45-201 - 682 2.7e-126 406.9 113.1 4 18 0.011 9.7 6.8 0.4 5 22 238 255 234 259 0.87 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF45-201 - 682 2.7e-126 406.9 113.1 5 18 1.9e-07 0.00017 21.8 0.6 7 25 268 286 260 287 0.85 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF45-201 - 682 2.7e-126 406.9 113.1 6 18 5e-11 4.5e-08 33.2 1.5 2 25 291 314 290 314 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF45-201 - 682 2.7e-126 406.9 113.1 7 18 2.3e-11 2e-08 34.3 0.5 2 25 319 342 318 343 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF45-201 - 682 2.7e-126 406.9 113.1 8 18 2.4e-10 2.2e-07 31.0 2.9 1 25 346 370 346 370 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF45-201 - 682 2.7e-126 406.9 113.1 9 18 2.6e-10 2.3e-07 30.9 0.9 1 24 374 397 374 397 0.97 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF45-201 - 682 2.7e-126 406.9 113.1 10 18 5.6e-11 5e-08 33.0 0.1 1 25 402 426 402 427 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF45-201 - 682 2.7e-126 406.9 113.1 11 18 4.4e-11 3.9e-08 33.4 0.7 2 25 431 454 430 455 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF45-201 - 682 2.7e-126 406.9 113.1 12 18 8.3e-10 7.4e-07 29.3 0.3 1 25 458 482 458 483 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF45-201 - 682 2.7e-126 406.9 113.1 13 18 5.8e-11 5.2e-08 33.0 1.2 1 25 486 510 486 511 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF45-201 - 682 2.7e-126 406.9 113.1 14 18 7.7e-11 6.9e-08 32.6 0.1 1 25 514 538 514 538 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF45-201 - 682 2.7e-126 406.9 113.1 15 18 1.7e-10 1.5e-07 31.5 1.2 2 24 543 565 542 565 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF45-201 - 682 2.7e-126 406.9 113.1 16 18 8.1e-10 7.3e-07 29.3 0.4 3 25 572 594 570 595 0.90 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF45-201 - 682 2.7e-126 406.9 113.1 17 18 2.6e-11 2.4e-08 34.0 0.4 2 25 599 622 598 622 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF45-201 - 682 2.7e-126 406.9 113.1 18 18 1.5e-11 1.4e-08 34.8 0.5 2 25 627 650 626 650 0.95 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZNF45-201 - 682 3.1e-79 257.3 114.5 1 18 1.8 1.7e+03 -0.2 0.2 12 20 148 156 146 157 0.82 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF45-201 - 682 3.1e-79 257.3 114.5 2 18 1.5 1.4e+03 0.1 0.0 5 17 168 180 166 181 0.83 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF45-201 - 682 3.1e-79 257.3 114.5 3 18 2.2e-07 0.0002 21.6 1.2 1 23 192 214 192 214 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF45-201 - 682 3.1e-79 257.3 114.5 4 18 0.16 1.5e+02 3.2 1.1 8 21 227 240 226 241 0.92 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF45-201 - 682 3.1e-79 257.3 114.5 5 18 1.5e-07 0.00013 22.2 0.2 1 23 276 298 276 298 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF45-201 - 682 3.1e-79 257.3 114.5 6 18 1.9e-06 0.0017 18.7 0.4 1 23 304 326 304 326 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF45-201 - 682 3.1e-79 257.3 114.5 7 18 3.1e-06 0.0027 18.0 4.7 1 23 332 354 332 354 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF45-201 - 682 3.1e-79 257.3 114.5 8 18 5.8e-07 0.00052 20.3 0.3 1 23 360 382 360 382 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF45-201 - 682 3.1e-79 257.3 114.5 9 18 1.9e-08 1.7e-05 25.0 0.8 1 23 388 410 388 410 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF45-201 - 682 3.1e-79 257.3 114.5 10 18 3.9e-07 0.00035 20.9 0.5 1 23 416 438 416 438 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF45-201 - 682 3.1e-79 257.3 114.5 11 18 7e-09 6.2e-06 26.4 0.1 1 23 444 466 444 466 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF45-201 - 682 3.1e-79 257.3 114.5 12 18 1.4e-07 0.00013 22.3 1.7 1 23 472 494 472 494 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF45-201 - 682 3.1e-79 257.3 114.5 13 18 1.3e-08 1.2e-05 25.5 0.9 1 23 500 522 500 522 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF45-201 - 682 3.1e-79 257.3 114.5 14 18 1.5e-05 0.013 15.9 0.6 1 21 528 548 528 550 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF45-201 - 682 3.1e-79 257.3 114.5 15 18 6.6e-07 0.00059 20.1 0.6 1 23 556 578 556 578 0.95 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF45-201 - 682 3.1e-79 257.3 114.5 16 18 4.5e-09 4e-06 27.0 1.3 1 23 584 606 584 606 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF45-201 - 682 3.1e-79 257.3 114.5 17 18 9.4e-08 8.5e-05 22.8 0.3 1 23 612 634 612 634 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF45-201 - 682 3.1e-79 257.3 114.5 18 18 8.1e-07 0.00073 19.9 0.1 1 23 640 662 640 662 0.99 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZNF45-201 - 682 2.9e-42 139.7 119.6 1 18 8.3 7.4e+03 -1.6 0.2 9 19 144 155 142 158 0.66 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF45-201 - 682 2.9e-42 139.7 119.6 2 18 1.7 1.5e+03 0.5 0.1 2 15 165 177 164 181 0.71 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF45-201 - 682 2.9e-42 139.7 119.6 3 18 0.00018 0.17 12.8 1.1 1 23 192 214 192 215 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF45-201 - 682 2.9e-42 139.7 119.6 4 18 9.3 8.4e+03 -1.8 0.6 8 21 227 240 226 241 0.79 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF45-201 - 682 2.9e-42 139.7 119.6 5 18 1.3e-05 0.012 16.4 0.4 1 23 276 298 276 299 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF45-201 - 682 2.9e-42 139.7 119.6 6 18 3.2e-05 0.028 15.2 0.6 1 23 304 326 304 327 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF45-201 - 682 2.9e-42 139.7 119.6 7 18 0.00015 0.14 13.1 3.8 1 23 332 354 332 355 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF45-201 - 682 2.9e-42 139.7 119.6 8 18 2.7e-05 0.024 15.4 0.5 1 23 360 382 360 383 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF45-201 - 682 2.9e-42 139.7 119.6 9 18 1.7e-05 0.015 16.1 0.8 1 23 388 410 388 411 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF45-201 - 682 2.9e-42 139.7 119.6 10 18 3.3e-05 0.03 15.2 0.4 1 23 416 438 416 439 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF45-201 - 682 2.9e-42 139.7 119.6 11 18 1.1e-05 0.0096 16.7 0.1 1 23 444 466 444 467 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF45-201 - 682 2.9e-42 139.7 119.6 12 18 3.7e-05 0.033 15.0 1.2 1 23 472 494 472 495 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF45-201 - 682 2.9e-42 139.7 119.6 13 18 1.8e-05 0.016 16.0 1.2 1 23 500 522 500 523 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF45-201 - 682 2.9e-42 139.7 119.6 14 18 0.0019 1.7 9.7 0.9 1 21 528 548 528 550 0.89 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF45-201 - 682 2.9e-42 139.7 119.6 15 18 0.0002 0.18 12.7 0.9 1 23 556 578 556 579 0.90 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF45-201 - 682 2.9e-42 139.7 119.6 16 18 8.5e-06 0.0076 17.0 1.0 1 23 584 606 584 607 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF45-201 - 682 2.9e-42 139.7 119.6 17 18 2.1e-05 0.019 15.8 0.7 1 23 612 634 612 635 0.89 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF45-201 - 682 2.9e-42 139.7 119.6 18 18 0.00033 0.29 12.1 0.2 1 23 640 662 640 663 0.89 C2H2-type zinc finger KRAB PF01352.27 42 ZNF45-201 - 682 1.5e-22 79.0 0.6 1 1 3.1e-25 2.8e-22 78.1 0.6 2 42 8 48 7 48 0.98 KRAB box zf-C2H2_jaz PF12171.8 27 ZNF45-201 - 682 6.2e-20 71.0 52.6 1 15 4.6 4.1e+03 -1.8 0.3 2 21 192 211 191 212 0.75 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF45-201 - 682 6.2e-20 71.0 52.6 2 15 0.012 10 6.5 0.0 2 22 276 296 275 296 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF45-201 - 682 6.2e-20 71.0 52.6 3 15 0.0031 2.8 8.4 0.0 2 22 304 324 303 324 0.91 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF45-201 - 682 6.2e-20 71.0 52.6 4 15 0.24 2.2e+02 2.3 1.5 2 20 332 350 331 352 0.76 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF45-201 - 682 6.2e-20 71.0 52.6 5 15 0.0047 4.2 7.8 0.2 2 24 360 382 359 382 0.89 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF45-201 - 682 6.2e-20 71.0 52.6 6 15 0.0012 1 9.7 0.2 2 24 388 410 387 410 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF45-201 - 682 6.2e-20 71.0 52.6 7 15 0.0013 1.2 9.5 0.0 4 22 418 436 415 436 0.91 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF45-201 - 682 6.2e-20 71.0 52.6 8 15 5.8e-05 0.052 13.8 0.0 2 24 444 466 443 466 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF45-201 - 682 6.2e-20 71.0 52.6 9 15 0.0015 1.3 9.4 0.0 2 22 472 492 471 492 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF45-201 - 682 6.2e-20 71.0 52.6 10 15 1.7 1.5e+03 -0.4 0.2 2 21 500 519 499 520 0.80 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF45-201 - 682 6.2e-20 71.0 52.6 11 15 0.029 26 5.3 0.0 4 22 530 548 527 548 0.90 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF45-201 - 682 6.2e-20 71.0 52.6 12 15 0.043 39 4.7 0.2 4 20 558 574 555 575 0.90 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF45-201 - 682 6.2e-20 71.0 52.6 13 15 0.0079 7.1 7.0 0.1 2 22 584 604 583 604 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF45-201 - 682 6.2e-20 71.0 52.6 14 15 0.0022 2 8.8 0.1 2 22 612 632 611 632 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF45-201 - 682 6.2e-20 71.0 52.6 15 15 0.019 17 5.9 0.0 2 20 640 658 639 660 0.78 Zinc-finger double-stranded RNA-binding zf_UBZ PF18439.1 32 ZNF45-201 - 682 1.1e-15 56.9 59.0 1 15 0.045 40 3.9 0.1 3 21 192 211 190 211 0.82 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF45-201 - 682 1.1e-15 56.9 59.0 2 15 0.12 1.1e+02 2.5 0.1 3 9 276 282 274 292 0.82 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF45-201 - 682 1.1e-15 56.9 59.0 3 15 0.0013 1.2 8.8 0.2 3 20 304 322 302 323 0.76 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF45-201 - 682 1.1e-15 56.9 59.0 4 15 0.083 74 3.1 0.1 3 13 332 342 330 347 0.86 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF45-201 - 682 1.1e-15 56.9 59.0 5 15 0.0016 1.4 8.6 0.2 3 21 360 379 358 379 0.85 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF45-201 - 682 1.1e-15 56.9 59.0 6 15 0.027 24 4.6 0.5 3 12 388 397 386 407 0.83 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF45-201 - 682 1.1e-15 56.9 59.0 7 15 0.023 20 4.9 0.1 3 15 416 428 414 434 0.81 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF45-201 - 682 1.1e-15 56.9 59.0 8 15 0.0014 1.3 8.7 0.1 3 21 444 463 442 463 0.86 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF45-201 - 682 1.1e-15 56.9 59.0 9 15 0.09 81 2.9 0.0 3 16 472 486 470 490 0.80 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF45-201 - 682 1.1e-15 56.9 59.0 10 15 0.00045 0.4 10.3 0.1 3 20 500 518 498 519 0.85 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF45-201 - 682 1.1e-15 56.9 59.0 11 15 0.00041 0.37 10.4 0.0 3 21 528 547 526 547 0.93 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF45-201 - 682 1.1e-15 56.9 59.0 12 15 0.024 21 4.8 0.5 3 11 556 564 554 574 0.86 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF45-201 - 682 1.1e-15 56.9 59.0 13 15 0.061 55 3.5 0.1 3 17 584 599 582 603 0.75 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF45-201 - 682 1.1e-15 56.9 59.0 14 15 0.0019 1.7 8.3 0.1 3 20 612 630 610 631 0.77 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF45-201 - 682 1.1e-15 56.9 59.0 15 15 0.011 10 5.8 0.1 3 13 640 650 638 656 0.86 Ubiquitin-Binding Zinc Finger Zn-ribbon_8 PF09723.10 40 ZNF45-201 - 682 9.9e-14 51.2 93.1 1 15 0.0052 4.7 7.4 0.3 6 21 192 207 189 214 0.85 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF45-201 - 682 9.9e-14 51.2 93.1 2 15 0.012 10 6.3 6.4 6 34 276 311 275 312 0.87 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF45-201 - 682 9.9e-14 51.2 93.1 3 15 0.00012 0.11 12.7 4.0 6 34 304 339 303 342 0.84 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF45-201 - 682 9.9e-14 51.2 93.1 4 15 0.00073 0.66 10.2 6.1 6 34 332 367 331 367 0.91 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF45-201 - 682 9.9e-14 51.2 93.1 5 15 0.00054 0.48 10.6 7.5 6 34 360 395 359 400 0.84 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF45-201 - 682 9.9e-14 51.2 93.1 6 15 0.011 9.7 6.4 6.9 6 36 388 425 387 428 0.85 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF45-201 - 682 9.9e-14 51.2 93.1 7 15 0.0022 1.9 8.6 5.1 6 34 416 451 415 453 0.83 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF45-201 - 682 9.9e-14 51.2 93.1 8 15 0.00018 0.16 12.1 3.4 6 36 444 481 443 484 0.89 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF45-201 - 682 9.9e-14 51.2 93.1 9 15 0.00066 0.59 10.3 4.4 6 35 472 508 471 511 0.91 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF45-201 - 682 9.9e-14 51.2 93.1 10 15 0.00014 0.12 12.5 4.9 6 34 500 535 499 535 0.91 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF45-201 - 682 9.9e-14 51.2 93.1 11 15 0.007 6.2 7.0 9.0 6 34 528 563 527 568 0.89 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF45-201 - 682 9.9e-14 51.2 93.1 12 15 0.051 46 4.2 1.8 6 15 556 565 555 574 0.89 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF45-201 - 682 9.9e-14 51.2 93.1 13 15 0.0019 1.7 8.8 5.9 6 33 584 618 583 618 0.93 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF45-201 - 682 9.9e-14 51.2 93.1 14 15 1.6e-05 0.015 15.4 4.5 6 34 612 647 611 650 0.93 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF45-201 - 682 9.9e-14 51.2 93.1 15 15 0.0048 4.3 7.5 0.5 6 16 640 650 639 666 0.75 Zinc ribbon domain zf-met PF12874.7 25 ZNF45-201 - 682 5.9e-11 42.4 86.6 1 15 4.9 4.4e+03 -1.7 0.0 15 21 174 180 172 182 0.85 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF45-201 - 682 5.9e-11 42.4 86.6 2 15 0.0028 2.5 8.6 0.3 1 21 276 296 276 299 0.94 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF45-201 - 682 5.9e-11 42.4 86.6 3 15 0.036 33 5.1 0.4 1 21 304 324 304 327 0.88 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF45-201 - 682 5.9e-11 42.4 86.6 4 15 0.0034 3 8.4 4.6 1 22 332 353 332 355 0.92 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF45-201 - 682 5.9e-11 42.4 86.6 5 15 0.23 2e+02 2.5 0.6 1 22 360 381 360 383 0.85 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF45-201 - 682 5.9e-11 42.4 86.6 6 15 0.0003 0.27 11.7 0.8 1 23 388 410 388 411 0.95 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF45-201 - 682 5.9e-11 42.4 86.6 7 15 0.00027 0.25 11.8 0.2 1 21 416 436 416 439 0.94 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF45-201 - 682 5.9e-11 42.4 86.6 8 15 0.00053 0.48 10.9 0.4 1 23 444 466 444 467 0.95 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF45-201 - 682 5.9e-11 42.4 86.6 9 15 0.0045 4.1 7.9 0.8 1 22 472 493 472 495 0.91 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF45-201 - 682 5.9e-11 42.4 86.6 10 15 1.3 1.2e+03 0.1 0.2 1 11 500 510 500 520 0.77 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF45-201 - 682 5.9e-11 42.4 86.6 11 15 0.43 3.8e+02 1.7 0.0 1 20 528 547 528 548 0.89 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF45-201 - 682 5.9e-11 42.4 86.6 12 15 0.0042 3.8 8.0 0.4 1 19 556 574 556 575 0.97 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF45-201 - 682 5.9e-11 42.4 86.6 13 15 0.00013 0.11 12.9 0.2 1 21 584 604 584 606 0.93 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF45-201 - 682 5.9e-11 42.4 86.6 14 15 0.064 57 4.3 0.9 1 20 612 631 612 634 0.90 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF45-201 - 682 5.9e-11 42.4 86.6 15 15 0.42 3.8e+02 1.7 0.2 1 19 640 658 640 662 0.83 Zinc-finger of C2H2 type XPA_N PF01286.18 32 ZNF45-201 - 682 9.2e-11 41.6 66.5 1 15 0.23 2.1e+02 2.1 0.2 3 11 193 201 191 203 0.87 XPA protein N-terminal XPA_N PF01286.18 32 ZNF45-201 - 682 9.2e-11 41.6 66.5 2 15 0.024 22 5.2 0.1 3 16 277 291 275 296 0.79 XPA protein N-terminal XPA_N PF01286.18 32 ZNF45-201 - 682 9.2e-11 41.6 66.5 3 15 0.0073 6.5 6.9 0.1 3 11 305 313 303 320 0.90 XPA protein N-terminal XPA_N PF01286.18 32 ZNF45-201 - 682 9.2e-11 41.6 66.5 4 15 0.1 90 3.2 0.1 3 14 333 344 331 349 0.86 XPA protein N-terminal XPA_N PF01286.18 32 ZNF45-201 - 682 9.2e-11 41.6 66.5 5 15 0.008 7.2 6.8 0.1 3 12 361 370 359 376 0.89 XPA protein N-terminal XPA_N PF01286.18 32 ZNF45-201 - 682 9.2e-11 41.6 66.5 6 15 0.0037 3.4 7.8 0.6 3 13 389 399 387 406 0.80 XPA protein N-terminal XPA_N PF01286.18 32 ZNF45-201 - 682 9.2e-11 41.6 66.5 7 15 0.051 46 4.2 0.2 3 14 417 428 415 431 0.90 XPA protein N-terminal XPA_N PF01286.18 32 ZNF45-201 - 682 9.2e-11 41.6 66.5 8 15 0.004 3.6 7.7 0.1 3 13 445 455 443 462 0.85 XPA protein N-terminal XPA_N PF01286.18 32 ZNF45-201 - 682 9.2e-11 41.6 66.5 9 15 0.25 2.2e+02 2.0 0.1 3 14 473 484 471 485 0.89 XPA protein N-terminal XPA_N PF01286.18 32 ZNF45-201 - 682 9.2e-11 41.6 66.5 10 15 0.054 49 4.1 0.2 3 12 501 510 499 512 0.89 XPA protein N-terminal XPA_N PF01286.18 32 ZNF45-201 - 682 9.2e-11 41.6 66.5 11 15 0.049 44 4.2 0.2 3 12 529 538 527 549 0.82 XPA protein N-terminal XPA_N PF01286.18 32 ZNF45-201 - 682 9.2e-11 41.6 66.5 12 15 0.016 14 5.8 1.1 3 12 557 566 555 569 0.88 XPA protein N-terminal XPA_N PF01286.18 32 ZNF45-201 - 682 9.2e-11 41.6 66.5 13 15 0.029 26 5.0 0.0 3 17 585 600 583 603 0.79 XPA protein N-terminal XPA_N PF01286.18 32 ZNF45-201 - 682 9.2e-11 41.6 66.5 14 15 0.002 1.8 8.7 0.2 3 17 613 627 611 630 0.81 XPA protein N-terminal XPA_N PF01286.18 32 ZNF45-201 - 682 9.2e-11 41.6 66.5 15 15 0.0055 5 7.3 0.2 3 13 641 651 639 653 0.86 XPA protein N-terminal C1_4 PF07975.12 55 ZNF45-201 - 682 3.1e-07 30.5 66.4 1 14 0.012 11 6.4 0.5 5 35 169 201 166 215 0.69 TFIIH C1-like domain C1_4 PF07975.12 55 ZNF45-201 - 682 3.1e-07 30.5 66.4 2 14 0.84 7.6e+02 0.5 0.2 24 35 274 285 259 300 0.75 TFIIH C1-like domain C1_4 PF07975.12 55 ZNF45-201 - 682 3.1e-07 30.5 66.4 3 14 0.0069 6.2 7.1 0.8 20 49 298 327 277 330 0.73 TFIIH C1-like domain C1_4 PF07975.12 55 ZNF45-201 - 682 3.1e-07 30.5 66.4 4 14 0.027 24 5.2 3.4 2 49 306 355 305 358 0.79 TFIIH C1-like domain C1_4 PF07975.12 55 ZNF45-201 - 682 3.1e-07 30.5 66.4 5 14 0.015 14 6.0 4.3 1 48 333 382 333 384 0.79 TFIIH C1-like domain C1_4 PF07975.12 55 ZNF45-201 - 682 3.1e-07 30.5 66.4 6 14 0.011 9.5 6.5 4.1 2 40 362 402 361 412 0.73 TFIIH C1-like domain C1_4 PF07975.12 55 ZNF45-201 - 682 3.1e-07 30.5 66.4 7 14 0.04 36 4.7 0.2 22 49 412 439 400 442 0.84 TFIIH C1-like domain C1_4 PF07975.12 55 ZNF45-201 - 682 3.1e-07 30.5 66.4 8 14 0.03 27 5.1 1.0 2 48 418 466 417 470 0.73 TFIIH C1-like domain C1_4 PF07975.12 55 ZNF45-201 - 682 3.1e-07 30.5 66.4 9 14 0.0014 1.3 9.3 0.8 2 49 446 495 445 498 0.87 TFIIH C1-like domain C1_4 PF07975.12 55 ZNF45-201 - 682 3.1e-07 30.5 66.4 10 14 0.1 92 3.4 0.1 25 49 499 523 495 525 0.84 TFIIH C1-like domain C1_4 PF07975.12 55 ZNF45-201 - 682 3.1e-07 30.5 66.4 11 14 0.00086 0.77 10.0 3.8 1 48 529 578 529 581 0.83 TFIIH C1-like domain C1_4 PF07975.12 55 ZNF45-201 - 682 3.1e-07 30.5 66.4 12 14 0.57 5.1e+02 1.0 0.1 23 35 581 593 567 608 0.76 TFIIH C1-like domain C1_4 PF07975.12 55 ZNF45-201 - 682 3.1e-07 30.5 66.4 13 14 0.0099 8.9 6.6 1.6 2 48 586 634 585 637 0.75 TFIIH C1-like domain C1_4 PF07975.12 55 ZNF45-201 - 682 3.1e-07 30.5 66.4 14 14 0.0037 3.3 8.0 0.8 2 49 614 663 613 664 0.74 TFIIH C1-like domain zf-C2H2_6 PF13912.6 27 ZNF45-201 - 682 6.1e-07 29.3 110.6 1 15 0.0014 1.3 9.1 0.9 2 24 192 214 192 217 0.92 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF45-201 - 682 6.1e-07 29.3 110.6 2 15 0.12 1.1e+02 3.0 0.5 2 12 276 286 276 287 0.91 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF45-201 - 682 6.1e-07 29.3 110.6 3 15 0.0046 4.1 7.5 1.7 2 12 304 314 304 314 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF45-201 - 682 6.1e-07 29.3 110.6 4 15 0.0095 8.5 6.5 2.6 2 13 332 343 332 352 0.90 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF45-201 - 682 6.1e-07 29.3 110.6 5 15 0.0024 2.2 8.4 1.7 2 24 360 382 360 385 0.92 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF45-201 - 682 6.1e-07 29.3 110.6 6 15 0.041 37 4.5 1.0 2 11 388 397 388 410 0.86 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF45-201 - 682 6.1e-07 29.3 110.6 7 15 0.039 35 4.5 0.2 2 12 416 426 416 427 0.91 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF45-201 - 682 6.1e-07 29.3 110.6 8 15 0.0046 4.2 7.5 0.7 2 22 444 464 444 468 0.82 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF45-201 - 682 6.1e-07 29.3 110.6 9 15 0.043 39 4.4 1.6 2 20 472 490 472 494 0.83 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF45-201 - 682 6.1e-07 29.3 110.6 10 15 0.049 44 4.2 1.3 2 22 500 520 500 524 0.84 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF45-201 - 682 6.1e-07 29.3 110.6 11 15 0.0009 0.8 9.8 2.6 2 24 528 550 528 553 0.95 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF45-201 - 682 6.1e-07 29.3 110.6 12 15 0.59 5.3e+02 0.8 2.8 2 11 556 565 556 566 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF45-201 - 682 6.1e-07 29.3 110.6 13 15 0.00022 0.2 11.7 0.1 2 12 584 594 584 601 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF45-201 - 682 6.1e-07 29.3 110.6 14 15 0.0023 2 8.5 0.5 2 12 612 622 612 624 0.95 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF45-201 - 682 6.1e-07 29.3 110.6 15 15 0.0099 8.9 6.4 0.3 2 12 640 650 640 662 0.84 C2H2-type zinc finger C1_1 PF00130.22 53 ZNF45-201 - 682 1e-06 28.5 71.5 1 13 0.11 96 3.0 0.2 9 24 189 205 157 214 0.75 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF45-201 - 682 1e-06 28.5 71.5 2 13 0.027 24 4.9 0.3 15 36 261 283 254 294 0.81 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF45-201 - 682 1e-06 28.5 71.5 3 13 0.008 7.2 6.6 2.8 5 34 297 337 294 337 0.74 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF45-201 - 682 1e-06 28.5 71.5 4 13 0.013 12 5.9 4.2 9 35 329 366 322 369 0.80 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF45-201 - 682 1e-06 28.5 71.5 5 13 0.14 1.2e+02 2.6 0.9 9 22 357 370 350 377 0.71 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF45-201 - 682 1e-06 28.5 71.5 6 13 0.0015 1.3 8.9 4.0 1 35 378 422 378 427 0.93 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF45-201 - 682 1e-06 28.5 71.5 7 13 0.00052 0.47 10.4 0.5 2 35 434 478 434 481 0.90 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF45-201 - 682 1e-06 28.5 71.5 8 13 0.018 16 5.5 2.0 9 36 469 507 461 511 0.80 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF45-201 - 682 1e-06 28.5 71.5 9 13 0.94 8.4e+02 -0.0 11.6 9 44 497 551 490 565 0.70 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF45-201 - 682 1e-06 28.5 71.5 10 13 0.35 3.2e+02 1.3 6.4 9 37 553 592 546 596 0.77 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF45-201 - 682 1e-06 28.5 71.5 11 13 0.00037 0.33 10.9 0.4 5 37 578 620 574 622 0.84 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF45-201 - 682 1e-06 28.5 71.5 12 13 0.0019 1.7 8.6 1.4 1 35 602 646 602 649 0.83 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF45-201 - 682 1e-06 28.5 71.5 13 13 0.037 33 4.5 0.2 1 22 630 651 630 661 0.75 Phorbol esters/diacylglycerol binding domain (C1 domain) # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF45-201.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF45-201.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF45-201.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF45-201.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF45-201.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:06:50 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF45-202.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF45-202.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF45-202.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF45-202.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF45-202.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:06:51 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF45-203.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF45-203.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF45-203.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF45-203.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF45-203.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:06:51 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZNF45-204 - 682 2.7e-126 406.9 113.1 1 18 0.00041 0.37 11.3 0.9 5 24 151 173 149 174 0.81 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF45-204 - 682 2.7e-126 406.9 113.1 2 18 2.4e-06 0.0022 18.4 0.1 8 25 185 202 175 203 0.81 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF45-204 - 682 2.7e-126 406.9 113.1 3 18 0.38 3.4e+02 1.9 0.1 1 15 206 220 206 221 0.79 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF45-204 - 682 2.7e-126 406.9 113.1 4 18 0.011 9.7 6.8 0.4 5 22 238 255 234 259 0.87 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF45-204 - 682 2.7e-126 406.9 113.1 5 18 1.9e-07 0.00017 21.8 0.6 7 25 268 286 260 287 0.85 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF45-204 - 682 2.7e-126 406.9 113.1 6 18 5e-11 4.5e-08 33.2 1.5 2 25 291 314 290 314 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF45-204 - 682 2.7e-126 406.9 113.1 7 18 2.3e-11 2e-08 34.3 0.5 2 25 319 342 318 343 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF45-204 - 682 2.7e-126 406.9 113.1 8 18 2.4e-10 2.2e-07 31.0 2.9 1 25 346 370 346 370 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF45-204 - 682 2.7e-126 406.9 113.1 9 18 2.6e-10 2.3e-07 30.9 0.9 1 24 374 397 374 397 0.97 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF45-204 - 682 2.7e-126 406.9 113.1 10 18 5.6e-11 5e-08 33.0 0.1 1 25 402 426 402 427 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF45-204 - 682 2.7e-126 406.9 113.1 11 18 4.4e-11 3.9e-08 33.4 0.7 2 25 431 454 430 455 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF45-204 - 682 2.7e-126 406.9 113.1 12 18 8.3e-10 7.4e-07 29.3 0.3 1 25 458 482 458 483 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF45-204 - 682 2.7e-126 406.9 113.1 13 18 5.8e-11 5.2e-08 33.0 1.2 1 25 486 510 486 511 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF45-204 - 682 2.7e-126 406.9 113.1 14 18 7.7e-11 6.9e-08 32.6 0.1 1 25 514 538 514 538 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF45-204 - 682 2.7e-126 406.9 113.1 15 18 1.7e-10 1.5e-07 31.5 1.2 2 24 543 565 542 565 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF45-204 - 682 2.7e-126 406.9 113.1 16 18 8.1e-10 7.3e-07 29.3 0.4 3 25 572 594 570 595 0.90 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF45-204 - 682 2.7e-126 406.9 113.1 17 18 2.6e-11 2.4e-08 34.0 0.4 2 25 599 622 598 622 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF45-204 - 682 2.7e-126 406.9 113.1 18 18 1.5e-11 1.4e-08 34.8 0.5 2 25 627 650 626 650 0.95 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZNF45-204 - 682 3.1e-79 257.3 114.5 1 18 1.8 1.7e+03 -0.2 0.2 12 20 148 156 146 157 0.82 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF45-204 - 682 3.1e-79 257.3 114.5 2 18 1.5 1.4e+03 0.1 0.0 5 17 168 180 166 181 0.83 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF45-204 - 682 3.1e-79 257.3 114.5 3 18 2.2e-07 0.0002 21.6 1.2 1 23 192 214 192 214 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF45-204 - 682 3.1e-79 257.3 114.5 4 18 0.16 1.5e+02 3.2 1.1 8 21 227 240 226 241 0.92 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF45-204 - 682 3.1e-79 257.3 114.5 5 18 1.5e-07 0.00013 22.2 0.2 1 23 276 298 276 298 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF45-204 - 682 3.1e-79 257.3 114.5 6 18 1.9e-06 0.0017 18.7 0.4 1 23 304 326 304 326 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF45-204 - 682 3.1e-79 257.3 114.5 7 18 3.1e-06 0.0027 18.0 4.7 1 23 332 354 332 354 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF45-204 - 682 3.1e-79 257.3 114.5 8 18 5.8e-07 0.00052 20.3 0.3 1 23 360 382 360 382 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF45-204 - 682 3.1e-79 257.3 114.5 9 18 1.9e-08 1.7e-05 25.0 0.8 1 23 388 410 388 410 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF45-204 - 682 3.1e-79 257.3 114.5 10 18 3.9e-07 0.00035 20.9 0.5 1 23 416 438 416 438 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF45-204 - 682 3.1e-79 257.3 114.5 11 18 7e-09 6.2e-06 26.4 0.1 1 23 444 466 444 466 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF45-204 - 682 3.1e-79 257.3 114.5 12 18 1.4e-07 0.00013 22.3 1.7 1 23 472 494 472 494 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF45-204 - 682 3.1e-79 257.3 114.5 13 18 1.3e-08 1.2e-05 25.5 0.9 1 23 500 522 500 522 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF45-204 - 682 3.1e-79 257.3 114.5 14 18 1.5e-05 0.013 15.9 0.6 1 21 528 548 528 550 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF45-204 - 682 3.1e-79 257.3 114.5 15 18 6.6e-07 0.00059 20.1 0.6 1 23 556 578 556 578 0.95 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF45-204 - 682 3.1e-79 257.3 114.5 16 18 4.5e-09 4e-06 27.0 1.3 1 23 584 606 584 606 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF45-204 - 682 3.1e-79 257.3 114.5 17 18 9.4e-08 8.5e-05 22.8 0.3 1 23 612 634 612 634 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF45-204 - 682 3.1e-79 257.3 114.5 18 18 8.1e-07 0.00073 19.9 0.1 1 23 640 662 640 662 0.99 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZNF45-204 - 682 2.9e-42 139.7 119.6 1 18 8.3 7.4e+03 -1.6 0.2 9 19 144 155 142 158 0.66 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF45-204 - 682 2.9e-42 139.7 119.6 2 18 1.7 1.5e+03 0.5 0.1 2 15 165 177 164 181 0.71 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF45-204 - 682 2.9e-42 139.7 119.6 3 18 0.00018 0.17 12.8 1.1 1 23 192 214 192 215 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF45-204 - 682 2.9e-42 139.7 119.6 4 18 9.3 8.4e+03 -1.8 0.6 8 21 227 240 226 241 0.79 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF45-204 - 682 2.9e-42 139.7 119.6 5 18 1.3e-05 0.012 16.4 0.4 1 23 276 298 276 299 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF45-204 - 682 2.9e-42 139.7 119.6 6 18 3.2e-05 0.028 15.2 0.6 1 23 304 326 304 327 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF45-204 - 682 2.9e-42 139.7 119.6 7 18 0.00015 0.14 13.1 3.8 1 23 332 354 332 355 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF45-204 - 682 2.9e-42 139.7 119.6 8 18 2.7e-05 0.024 15.4 0.5 1 23 360 382 360 383 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF45-204 - 682 2.9e-42 139.7 119.6 9 18 1.7e-05 0.015 16.1 0.8 1 23 388 410 388 411 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF45-204 - 682 2.9e-42 139.7 119.6 10 18 3.3e-05 0.03 15.2 0.4 1 23 416 438 416 439 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF45-204 - 682 2.9e-42 139.7 119.6 11 18 1.1e-05 0.0096 16.7 0.1 1 23 444 466 444 467 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF45-204 - 682 2.9e-42 139.7 119.6 12 18 3.7e-05 0.033 15.0 1.2 1 23 472 494 472 495 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF45-204 - 682 2.9e-42 139.7 119.6 13 18 1.8e-05 0.016 16.0 1.2 1 23 500 522 500 523 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF45-204 - 682 2.9e-42 139.7 119.6 14 18 0.0019 1.7 9.7 0.9 1 21 528 548 528 550 0.89 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF45-204 - 682 2.9e-42 139.7 119.6 15 18 0.0002 0.18 12.7 0.9 1 23 556 578 556 579 0.90 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF45-204 - 682 2.9e-42 139.7 119.6 16 18 8.5e-06 0.0076 17.0 1.0 1 23 584 606 584 607 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF45-204 - 682 2.9e-42 139.7 119.6 17 18 2.1e-05 0.019 15.8 0.7 1 23 612 634 612 635 0.89 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF45-204 - 682 2.9e-42 139.7 119.6 18 18 0.00033 0.29 12.1 0.2 1 23 640 662 640 663 0.89 C2H2-type zinc finger KRAB PF01352.27 42 ZNF45-204 - 682 1.5e-22 79.0 0.6 1 1 3.1e-25 2.8e-22 78.1 0.6 2 42 8 48 7 48 0.98 KRAB box zf-C2H2_jaz PF12171.8 27 ZNF45-204 - 682 6.2e-20 71.0 52.6 1 15 4.6 4.1e+03 -1.8 0.3 2 21 192 211 191 212 0.75 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF45-204 - 682 6.2e-20 71.0 52.6 2 15 0.012 10 6.5 0.0 2 22 276 296 275 296 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF45-204 - 682 6.2e-20 71.0 52.6 3 15 0.0031 2.8 8.4 0.0 2 22 304 324 303 324 0.91 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF45-204 - 682 6.2e-20 71.0 52.6 4 15 0.24 2.2e+02 2.3 1.5 2 20 332 350 331 352 0.76 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF45-204 - 682 6.2e-20 71.0 52.6 5 15 0.0047 4.2 7.8 0.2 2 24 360 382 359 382 0.89 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF45-204 - 682 6.2e-20 71.0 52.6 6 15 0.0012 1 9.7 0.2 2 24 388 410 387 410 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF45-204 - 682 6.2e-20 71.0 52.6 7 15 0.0013 1.2 9.5 0.0 4 22 418 436 415 436 0.91 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF45-204 - 682 6.2e-20 71.0 52.6 8 15 5.8e-05 0.052 13.8 0.0 2 24 444 466 443 466 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF45-204 - 682 6.2e-20 71.0 52.6 9 15 0.0015 1.3 9.4 0.0 2 22 472 492 471 492 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF45-204 - 682 6.2e-20 71.0 52.6 10 15 1.7 1.5e+03 -0.4 0.2 2 21 500 519 499 520 0.80 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF45-204 - 682 6.2e-20 71.0 52.6 11 15 0.029 26 5.3 0.0 4 22 530 548 527 548 0.90 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF45-204 - 682 6.2e-20 71.0 52.6 12 15 0.043 39 4.7 0.2 4 20 558 574 555 575 0.90 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF45-204 - 682 6.2e-20 71.0 52.6 13 15 0.0079 7.1 7.0 0.1 2 22 584 604 583 604 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF45-204 - 682 6.2e-20 71.0 52.6 14 15 0.0022 2 8.8 0.1 2 22 612 632 611 632 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF45-204 - 682 6.2e-20 71.0 52.6 15 15 0.019 17 5.9 0.0 2 20 640 658 639 660 0.78 Zinc-finger double-stranded RNA-binding zf_UBZ PF18439.1 32 ZNF45-204 - 682 1.1e-15 56.9 59.0 1 15 0.045 40 3.9 0.1 3 21 192 211 190 211 0.82 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF45-204 - 682 1.1e-15 56.9 59.0 2 15 0.12 1.1e+02 2.5 0.1 3 9 276 282 274 292 0.82 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF45-204 - 682 1.1e-15 56.9 59.0 3 15 0.0013 1.2 8.8 0.2 3 20 304 322 302 323 0.76 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF45-204 - 682 1.1e-15 56.9 59.0 4 15 0.083 74 3.1 0.1 3 13 332 342 330 347 0.86 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF45-204 - 682 1.1e-15 56.9 59.0 5 15 0.0016 1.4 8.6 0.2 3 21 360 379 358 379 0.85 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF45-204 - 682 1.1e-15 56.9 59.0 6 15 0.027 24 4.6 0.5 3 12 388 397 386 407 0.83 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF45-204 - 682 1.1e-15 56.9 59.0 7 15 0.023 20 4.9 0.1 3 15 416 428 414 434 0.81 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF45-204 - 682 1.1e-15 56.9 59.0 8 15 0.0014 1.3 8.7 0.1 3 21 444 463 442 463 0.86 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF45-204 - 682 1.1e-15 56.9 59.0 9 15 0.09 81 2.9 0.0 3 16 472 486 470 490 0.80 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF45-204 - 682 1.1e-15 56.9 59.0 10 15 0.00045 0.4 10.3 0.1 3 20 500 518 498 519 0.85 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF45-204 - 682 1.1e-15 56.9 59.0 11 15 0.00041 0.37 10.4 0.0 3 21 528 547 526 547 0.93 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF45-204 - 682 1.1e-15 56.9 59.0 12 15 0.024 21 4.8 0.5 3 11 556 564 554 574 0.86 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF45-204 - 682 1.1e-15 56.9 59.0 13 15 0.061 55 3.5 0.1 3 17 584 599 582 603 0.75 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF45-204 - 682 1.1e-15 56.9 59.0 14 15 0.0019 1.7 8.3 0.1 3 20 612 630 610 631 0.77 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF45-204 - 682 1.1e-15 56.9 59.0 15 15 0.011 10 5.8 0.1 3 13 640 650 638 656 0.86 Ubiquitin-Binding Zinc Finger Zn-ribbon_8 PF09723.10 40 ZNF45-204 - 682 9.9e-14 51.2 93.1 1 15 0.0052 4.7 7.4 0.3 6 21 192 207 189 214 0.85 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF45-204 - 682 9.9e-14 51.2 93.1 2 15 0.012 10 6.3 6.4 6 34 276 311 275 312 0.87 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF45-204 - 682 9.9e-14 51.2 93.1 3 15 0.00012 0.11 12.7 4.0 6 34 304 339 303 342 0.84 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF45-204 - 682 9.9e-14 51.2 93.1 4 15 0.00073 0.66 10.2 6.1 6 34 332 367 331 367 0.91 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF45-204 - 682 9.9e-14 51.2 93.1 5 15 0.00054 0.48 10.6 7.5 6 34 360 395 359 400 0.84 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF45-204 - 682 9.9e-14 51.2 93.1 6 15 0.011 9.7 6.4 6.9 6 36 388 425 387 428 0.85 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF45-204 - 682 9.9e-14 51.2 93.1 7 15 0.0022 1.9 8.6 5.1 6 34 416 451 415 453 0.83 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF45-204 - 682 9.9e-14 51.2 93.1 8 15 0.00018 0.16 12.1 3.4 6 36 444 481 443 484 0.89 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF45-204 - 682 9.9e-14 51.2 93.1 9 15 0.00066 0.59 10.3 4.4 6 35 472 508 471 511 0.91 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF45-204 - 682 9.9e-14 51.2 93.1 10 15 0.00014 0.12 12.5 4.9 6 34 500 535 499 535 0.91 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF45-204 - 682 9.9e-14 51.2 93.1 11 15 0.007 6.2 7.0 9.0 6 34 528 563 527 568 0.89 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF45-204 - 682 9.9e-14 51.2 93.1 12 15 0.051 46 4.2 1.8 6 15 556 565 555 574 0.89 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF45-204 - 682 9.9e-14 51.2 93.1 13 15 0.0019 1.7 8.8 5.9 6 33 584 618 583 618 0.93 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF45-204 - 682 9.9e-14 51.2 93.1 14 15 1.6e-05 0.015 15.4 4.5 6 34 612 647 611 650 0.93 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF45-204 - 682 9.9e-14 51.2 93.1 15 15 0.0048 4.3 7.5 0.5 6 16 640 650 639 666 0.75 Zinc ribbon domain zf-met PF12874.7 25 ZNF45-204 - 682 5.9e-11 42.4 86.6 1 15 4.9 4.4e+03 -1.7 0.0 15 21 174 180 172 182 0.85 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF45-204 - 682 5.9e-11 42.4 86.6 2 15 0.0028 2.5 8.6 0.3 1 21 276 296 276 299 0.94 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF45-204 - 682 5.9e-11 42.4 86.6 3 15 0.036 33 5.1 0.4 1 21 304 324 304 327 0.88 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF45-204 - 682 5.9e-11 42.4 86.6 4 15 0.0034 3 8.4 4.6 1 22 332 353 332 355 0.92 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF45-204 - 682 5.9e-11 42.4 86.6 5 15 0.23 2e+02 2.5 0.6 1 22 360 381 360 383 0.85 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF45-204 - 682 5.9e-11 42.4 86.6 6 15 0.0003 0.27 11.7 0.8 1 23 388 410 388 411 0.95 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF45-204 - 682 5.9e-11 42.4 86.6 7 15 0.00027 0.25 11.8 0.2 1 21 416 436 416 439 0.94 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF45-204 - 682 5.9e-11 42.4 86.6 8 15 0.00053 0.48 10.9 0.4 1 23 444 466 444 467 0.95 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF45-204 - 682 5.9e-11 42.4 86.6 9 15 0.0045 4.1 7.9 0.8 1 22 472 493 472 495 0.91 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF45-204 - 682 5.9e-11 42.4 86.6 10 15 1.3 1.2e+03 0.1 0.2 1 11 500 510 500 520 0.77 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF45-204 - 682 5.9e-11 42.4 86.6 11 15 0.43 3.8e+02 1.7 0.0 1 20 528 547 528 548 0.89 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF45-204 - 682 5.9e-11 42.4 86.6 12 15 0.0042 3.8 8.0 0.4 1 19 556 574 556 575 0.97 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF45-204 - 682 5.9e-11 42.4 86.6 13 15 0.00013 0.11 12.9 0.2 1 21 584 604 584 606 0.93 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF45-204 - 682 5.9e-11 42.4 86.6 14 15 0.064 57 4.3 0.9 1 20 612 631 612 634 0.90 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF45-204 - 682 5.9e-11 42.4 86.6 15 15 0.42 3.8e+02 1.7 0.2 1 19 640 658 640 662 0.83 Zinc-finger of C2H2 type XPA_N PF01286.18 32 ZNF45-204 - 682 9.2e-11 41.6 66.5 1 15 0.23 2.1e+02 2.1 0.2 3 11 193 201 191 203 0.87 XPA protein N-terminal XPA_N PF01286.18 32 ZNF45-204 - 682 9.2e-11 41.6 66.5 2 15 0.024 22 5.2 0.1 3 16 277 291 275 296 0.79 XPA protein N-terminal XPA_N PF01286.18 32 ZNF45-204 - 682 9.2e-11 41.6 66.5 3 15 0.0073 6.5 6.9 0.1 3 11 305 313 303 320 0.90 XPA protein N-terminal XPA_N PF01286.18 32 ZNF45-204 - 682 9.2e-11 41.6 66.5 4 15 0.1 90 3.2 0.1 3 14 333 344 331 349 0.86 XPA protein N-terminal XPA_N PF01286.18 32 ZNF45-204 - 682 9.2e-11 41.6 66.5 5 15 0.008 7.2 6.8 0.1 3 12 361 370 359 376 0.89 XPA protein N-terminal XPA_N PF01286.18 32 ZNF45-204 - 682 9.2e-11 41.6 66.5 6 15 0.0037 3.4 7.8 0.6 3 13 389 399 387 406 0.80 XPA protein N-terminal XPA_N PF01286.18 32 ZNF45-204 - 682 9.2e-11 41.6 66.5 7 15 0.051 46 4.2 0.2 3 14 417 428 415 431 0.90 XPA protein N-terminal XPA_N PF01286.18 32 ZNF45-204 - 682 9.2e-11 41.6 66.5 8 15 0.004 3.6 7.7 0.1 3 13 445 455 443 462 0.85 XPA protein N-terminal XPA_N PF01286.18 32 ZNF45-204 - 682 9.2e-11 41.6 66.5 9 15 0.25 2.2e+02 2.0 0.1 3 14 473 484 471 485 0.89 XPA protein N-terminal XPA_N PF01286.18 32 ZNF45-204 - 682 9.2e-11 41.6 66.5 10 15 0.054 49 4.1 0.2 3 12 501 510 499 512 0.89 XPA protein N-terminal XPA_N PF01286.18 32 ZNF45-204 - 682 9.2e-11 41.6 66.5 11 15 0.049 44 4.2 0.2 3 12 529 538 527 549 0.82 XPA protein N-terminal XPA_N PF01286.18 32 ZNF45-204 - 682 9.2e-11 41.6 66.5 12 15 0.016 14 5.8 1.1 3 12 557 566 555 569 0.88 XPA protein N-terminal XPA_N PF01286.18 32 ZNF45-204 - 682 9.2e-11 41.6 66.5 13 15 0.029 26 5.0 0.0 3 17 585 600 583 603 0.79 XPA protein N-terminal XPA_N PF01286.18 32 ZNF45-204 - 682 9.2e-11 41.6 66.5 14 15 0.002 1.8 8.7 0.2 3 17 613 627 611 630 0.81 XPA protein N-terminal XPA_N PF01286.18 32 ZNF45-204 - 682 9.2e-11 41.6 66.5 15 15 0.0055 5 7.3 0.2 3 13 641 651 639 653 0.86 XPA protein N-terminal C1_4 PF07975.12 55 ZNF45-204 - 682 3.1e-07 30.5 66.4 1 14 0.012 11 6.4 0.5 5 35 169 201 166 215 0.69 TFIIH C1-like domain C1_4 PF07975.12 55 ZNF45-204 - 682 3.1e-07 30.5 66.4 2 14 0.84 7.6e+02 0.5 0.2 24 35 274 285 259 300 0.75 TFIIH C1-like domain C1_4 PF07975.12 55 ZNF45-204 - 682 3.1e-07 30.5 66.4 3 14 0.0069 6.2 7.1 0.8 20 49 298 327 277 330 0.73 TFIIH C1-like domain C1_4 PF07975.12 55 ZNF45-204 - 682 3.1e-07 30.5 66.4 4 14 0.027 24 5.2 3.4 2 49 306 355 305 358 0.79 TFIIH C1-like domain C1_4 PF07975.12 55 ZNF45-204 - 682 3.1e-07 30.5 66.4 5 14 0.015 14 6.0 4.3 1 48 333 382 333 384 0.79 TFIIH C1-like domain C1_4 PF07975.12 55 ZNF45-204 - 682 3.1e-07 30.5 66.4 6 14 0.011 9.5 6.5 4.1 2 40 362 402 361 412 0.73 TFIIH C1-like domain C1_4 PF07975.12 55 ZNF45-204 - 682 3.1e-07 30.5 66.4 7 14 0.04 36 4.7 0.2 22 49 412 439 400 442 0.84 TFIIH C1-like domain C1_4 PF07975.12 55 ZNF45-204 - 682 3.1e-07 30.5 66.4 8 14 0.03 27 5.1 1.0 2 48 418 466 417 470 0.73 TFIIH C1-like domain C1_4 PF07975.12 55 ZNF45-204 - 682 3.1e-07 30.5 66.4 9 14 0.0014 1.3 9.3 0.8 2 49 446 495 445 498 0.87 TFIIH C1-like domain C1_4 PF07975.12 55 ZNF45-204 - 682 3.1e-07 30.5 66.4 10 14 0.1 92 3.4 0.1 25 49 499 523 495 525 0.84 TFIIH C1-like domain C1_4 PF07975.12 55 ZNF45-204 - 682 3.1e-07 30.5 66.4 11 14 0.00086 0.77 10.0 3.8 1 48 529 578 529 581 0.83 TFIIH C1-like domain C1_4 PF07975.12 55 ZNF45-204 - 682 3.1e-07 30.5 66.4 12 14 0.57 5.1e+02 1.0 0.1 23 35 581 593 567 608 0.76 TFIIH C1-like domain C1_4 PF07975.12 55 ZNF45-204 - 682 3.1e-07 30.5 66.4 13 14 0.0099 8.9 6.6 1.6 2 48 586 634 585 637 0.75 TFIIH C1-like domain C1_4 PF07975.12 55 ZNF45-204 - 682 3.1e-07 30.5 66.4 14 14 0.0037 3.3 8.0 0.8 2 49 614 663 613 664 0.74 TFIIH C1-like domain zf-C2H2_6 PF13912.6 27 ZNF45-204 - 682 6.1e-07 29.3 110.6 1 15 0.0014 1.3 9.1 0.9 2 24 192 214 192 217 0.92 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF45-204 - 682 6.1e-07 29.3 110.6 2 15 0.12 1.1e+02 3.0 0.5 2 12 276 286 276 287 0.91 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF45-204 - 682 6.1e-07 29.3 110.6 3 15 0.0046 4.1 7.5 1.7 2 12 304 314 304 314 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF45-204 - 682 6.1e-07 29.3 110.6 4 15 0.0095 8.5 6.5 2.6 2 13 332 343 332 352 0.90 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF45-204 - 682 6.1e-07 29.3 110.6 5 15 0.0024 2.2 8.4 1.7 2 24 360 382 360 385 0.92 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF45-204 - 682 6.1e-07 29.3 110.6 6 15 0.041 37 4.5 1.0 2 11 388 397 388 410 0.86 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF45-204 - 682 6.1e-07 29.3 110.6 7 15 0.039 35 4.5 0.2 2 12 416 426 416 427 0.91 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF45-204 - 682 6.1e-07 29.3 110.6 8 15 0.0046 4.2 7.5 0.7 2 22 444 464 444 468 0.82 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF45-204 - 682 6.1e-07 29.3 110.6 9 15 0.043 39 4.4 1.6 2 20 472 490 472 494 0.83 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF45-204 - 682 6.1e-07 29.3 110.6 10 15 0.049 44 4.2 1.3 2 22 500 520 500 524 0.84 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF45-204 - 682 6.1e-07 29.3 110.6 11 15 0.0009 0.8 9.8 2.6 2 24 528 550 528 553 0.95 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF45-204 - 682 6.1e-07 29.3 110.6 12 15 0.59 5.3e+02 0.8 2.8 2 11 556 565 556 566 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF45-204 - 682 6.1e-07 29.3 110.6 13 15 0.00022 0.2 11.7 0.1 2 12 584 594 584 601 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF45-204 - 682 6.1e-07 29.3 110.6 14 15 0.0023 2 8.5 0.5 2 12 612 622 612 624 0.95 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF45-204 - 682 6.1e-07 29.3 110.6 15 15 0.0099 8.9 6.4 0.3 2 12 640 650 640 662 0.84 C2H2-type zinc finger C1_1 PF00130.22 53 ZNF45-204 - 682 1e-06 28.5 71.5 1 13 0.11 96 3.0 0.2 9 24 189 205 157 214 0.75 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF45-204 - 682 1e-06 28.5 71.5 2 13 0.027 24 4.9 0.3 15 36 261 283 254 294 0.81 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF45-204 - 682 1e-06 28.5 71.5 3 13 0.008 7.2 6.6 2.8 5 34 297 337 294 337 0.74 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF45-204 - 682 1e-06 28.5 71.5 4 13 0.013 12 5.9 4.2 9 35 329 366 322 369 0.80 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF45-204 - 682 1e-06 28.5 71.5 5 13 0.14 1.2e+02 2.6 0.9 9 22 357 370 350 377 0.71 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF45-204 - 682 1e-06 28.5 71.5 6 13 0.0015 1.3 8.9 4.0 1 35 378 422 378 427 0.93 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF45-204 - 682 1e-06 28.5 71.5 7 13 0.00052 0.47 10.4 0.5 2 35 434 478 434 481 0.90 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF45-204 - 682 1e-06 28.5 71.5 8 13 0.018 16 5.5 2.0 9 36 469 507 461 511 0.80 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF45-204 - 682 1e-06 28.5 71.5 9 13 0.94 8.4e+02 -0.0 11.6 9 44 497 551 490 565 0.70 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF45-204 - 682 1e-06 28.5 71.5 10 13 0.35 3.2e+02 1.3 6.4 9 37 553 592 546 596 0.77 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF45-204 - 682 1e-06 28.5 71.5 11 13 0.00037 0.33 10.9 0.4 5 37 578 620 574 622 0.84 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF45-204 - 682 1e-06 28.5 71.5 12 13 0.0019 1.7 8.6 1.4 1 35 602 646 602 649 0.83 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF45-204 - 682 1e-06 28.5 71.5 13 13 0.037 33 4.5 0.2 1 22 630 651 630 661 0.75 Phorbol esters/diacylglycerol binding domain (C1 domain) # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF45-204.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF45-204.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF45-204.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF45-204.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF45-204.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:06:52 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF45-205.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF45-205.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF45-205.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF45-205.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF45-205.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:06:52 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZNF45-206 - 682 2.7e-126 406.9 113.1 1 18 0.00041 0.37 11.3 0.9 5 24 151 173 149 174 0.81 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF45-206 - 682 2.7e-126 406.9 113.1 2 18 2.4e-06 0.0022 18.4 0.1 8 25 185 202 175 203 0.81 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF45-206 - 682 2.7e-126 406.9 113.1 3 18 0.38 3.4e+02 1.9 0.1 1 15 206 220 206 221 0.79 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF45-206 - 682 2.7e-126 406.9 113.1 4 18 0.011 9.7 6.8 0.4 5 22 238 255 234 259 0.87 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF45-206 - 682 2.7e-126 406.9 113.1 5 18 1.9e-07 0.00017 21.8 0.6 7 25 268 286 260 287 0.85 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF45-206 - 682 2.7e-126 406.9 113.1 6 18 5e-11 4.5e-08 33.2 1.5 2 25 291 314 290 314 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF45-206 - 682 2.7e-126 406.9 113.1 7 18 2.3e-11 2e-08 34.3 0.5 2 25 319 342 318 343 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF45-206 - 682 2.7e-126 406.9 113.1 8 18 2.4e-10 2.2e-07 31.0 2.9 1 25 346 370 346 370 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF45-206 - 682 2.7e-126 406.9 113.1 9 18 2.6e-10 2.3e-07 30.9 0.9 1 24 374 397 374 397 0.97 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF45-206 - 682 2.7e-126 406.9 113.1 10 18 5.6e-11 5e-08 33.0 0.1 1 25 402 426 402 427 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF45-206 - 682 2.7e-126 406.9 113.1 11 18 4.4e-11 3.9e-08 33.4 0.7 2 25 431 454 430 455 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF45-206 - 682 2.7e-126 406.9 113.1 12 18 8.3e-10 7.4e-07 29.3 0.3 1 25 458 482 458 483 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF45-206 - 682 2.7e-126 406.9 113.1 13 18 5.8e-11 5.2e-08 33.0 1.2 1 25 486 510 486 511 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF45-206 - 682 2.7e-126 406.9 113.1 14 18 7.7e-11 6.9e-08 32.6 0.1 1 25 514 538 514 538 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF45-206 - 682 2.7e-126 406.9 113.1 15 18 1.7e-10 1.5e-07 31.5 1.2 2 24 543 565 542 565 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF45-206 - 682 2.7e-126 406.9 113.1 16 18 8.1e-10 7.3e-07 29.3 0.4 3 25 572 594 570 595 0.90 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF45-206 - 682 2.7e-126 406.9 113.1 17 18 2.6e-11 2.4e-08 34.0 0.4 2 25 599 622 598 622 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF45-206 - 682 2.7e-126 406.9 113.1 18 18 1.5e-11 1.4e-08 34.8 0.5 2 25 627 650 626 650 0.95 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZNF45-206 - 682 3.1e-79 257.3 114.5 1 18 1.8 1.7e+03 -0.2 0.2 12 20 148 156 146 157 0.82 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF45-206 - 682 3.1e-79 257.3 114.5 2 18 1.5 1.4e+03 0.1 0.0 5 17 168 180 166 181 0.83 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF45-206 - 682 3.1e-79 257.3 114.5 3 18 2.2e-07 0.0002 21.6 1.2 1 23 192 214 192 214 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF45-206 - 682 3.1e-79 257.3 114.5 4 18 0.16 1.5e+02 3.2 1.1 8 21 227 240 226 241 0.92 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF45-206 - 682 3.1e-79 257.3 114.5 5 18 1.5e-07 0.00013 22.2 0.2 1 23 276 298 276 298 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF45-206 - 682 3.1e-79 257.3 114.5 6 18 1.9e-06 0.0017 18.7 0.4 1 23 304 326 304 326 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF45-206 - 682 3.1e-79 257.3 114.5 7 18 3.1e-06 0.0027 18.0 4.7 1 23 332 354 332 354 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF45-206 - 682 3.1e-79 257.3 114.5 8 18 5.8e-07 0.00052 20.3 0.3 1 23 360 382 360 382 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF45-206 - 682 3.1e-79 257.3 114.5 9 18 1.9e-08 1.7e-05 25.0 0.8 1 23 388 410 388 410 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF45-206 - 682 3.1e-79 257.3 114.5 10 18 3.9e-07 0.00035 20.9 0.5 1 23 416 438 416 438 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF45-206 - 682 3.1e-79 257.3 114.5 11 18 7e-09 6.2e-06 26.4 0.1 1 23 444 466 444 466 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF45-206 - 682 3.1e-79 257.3 114.5 12 18 1.4e-07 0.00013 22.3 1.7 1 23 472 494 472 494 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF45-206 - 682 3.1e-79 257.3 114.5 13 18 1.3e-08 1.2e-05 25.5 0.9 1 23 500 522 500 522 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF45-206 - 682 3.1e-79 257.3 114.5 14 18 1.5e-05 0.013 15.9 0.6 1 21 528 548 528 550 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF45-206 - 682 3.1e-79 257.3 114.5 15 18 6.6e-07 0.00059 20.1 0.6 1 23 556 578 556 578 0.95 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF45-206 - 682 3.1e-79 257.3 114.5 16 18 4.5e-09 4e-06 27.0 1.3 1 23 584 606 584 606 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF45-206 - 682 3.1e-79 257.3 114.5 17 18 9.4e-08 8.5e-05 22.8 0.3 1 23 612 634 612 634 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF45-206 - 682 3.1e-79 257.3 114.5 18 18 8.1e-07 0.00073 19.9 0.1 1 23 640 662 640 662 0.99 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZNF45-206 - 682 2.9e-42 139.7 119.6 1 18 8.3 7.4e+03 -1.6 0.2 9 19 144 155 142 158 0.66 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF45-206 - 682 2.9e-42 139.7 119.6 2 18 1.7 1.5e+03 0.5 0.1 2 15 165 177 164 181 0.71 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF45-206 - 682 2.9e-42 139.7 119.6 3 18 0.00018 0.17 12.8 1.1 1 23 192 214 192 215 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF45-206 - 682 2.9e-42 139.7 119.6 4 18 9.3 8.4e+03 -1.8 0.6 8 21 227 240 226 241 0.79 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF45-206 - 682 2.9e-42 139.7 119.6 5 18 1.3e-05 0.012 16.4 0.4 1 23 276 298 276 299 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF45-206 - 682 2.9e-42 139.7 119.6 6 18 3.2e-05 0.028 15.2 0.6 1 23 304 326 304 327 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF45-206 - 682 2.9e-42 139.7 119.6 7 18 0.00015 0.14 13.1 3.8 1 23 332 354 332 355 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF45-206 - 682 2.9e-42 139.7 119.6 8 18 2.7e-05 0.024 15.4 0.5 1 23 360 382 360 383 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF45-206 - 682 2.9e-42 139.7 119.6 9 18 1.7e-05 0.015 16.1 0.8 1 23 388 410 388 411 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF45-206 - 682 2.9e-42 139.7 119.6 10 18 3.3e-05 0.03 15.2 0.4 1 23 416 438 416 439 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF45-206 - 682 2.9e-42 139.7 119.6 11 18 1.1e-05 0.0096 16.7 0.1 1 23 444 466 444 467 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF45-206 - 682 2.9e-42 139.7 119.6 12 18 3.7e-05 0.033 15.0 1.2 1 23 472 494 472 495 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF45-206 - 682 2.9e-42 139.7 119.6 13 18 1.8e-05 0.016 16.0 1.2 1 23 500 522 500 523 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF45-206 - 682 2.9e-42 139.7 119.6 14 18 0.0019 1.7 9.7 0.9 1 21 528 548 528 550 0.89 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF45-206 - 682 2.9e-42 139.7 119.6 15 18 0.0002 0.18 12.7 0.9 1 23 556 578 556 579 0.90 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF45-206 - 682 2.9e-42 139.7 119.6 16 18 8.5e-06 0.0076 17.0 1.0 1 23 584 606 584 607 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF45-206 - 682 2.9e-42 139.7 119.6 17 18 2.1e-05 0.019 15.8 0.7 1 23 612 634 612 635 0.89 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF45-206 - 682 2.9e-42 139.7 119.6 18 18 0.00033 0.29 12.1 0.2 1 23 640 662 640 663 0.89 C2H2-type zinc finger KRAB PF01352.27 42 ZNF45-206 - 682 1.5e-22 79.0 0.6 1 1 3.1e-25 2.8e-22 78.1 0.6 2 42 8 48 7 48 0.98 KRAB box zf-C2H2_jaz PF12171.8 27 ZNF45-206 - 682 6.2e-20 71.0 52.6 1 15 4.6 4.1e+03 -1.8 0.3 2 21 192 211 191 212 0.75 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF45-206 - 682 6.2e-20 71.0 52.6 2 15 0.012 10 6.5 0.0 2 22 276 296 275 296 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF45-206 - 682 6.2e-20 71.0 52.6 3 15 0.0031 2.8 8.4 0.0 2 22 304 324 303 324 0.91 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF45-206 - 682 6.2e-20 71.0 52.6 4 15 0.24 2.2e+02 2.3 1.5 2 20 332 350 331 352 0.76 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF45-206 - 682 6.2e-20 71.0 52.6 5 15 0.0047 4.2 7.8 0.2 2 24 360 382 359 382 0.89 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF45-206 - 682 6.2e-20 71.0 52.6 6 15 0.0012 1 9.7 0.2 2 24 388 410 387 410 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF45-206 - 682 6.2e-20 71.0 52.6 7 15 0.0013 1.2 9.5 0.0 4 22 418 436 415 436 0.91 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF45-206 - 682 6.2e-20 71.0 52.6 8 15 5.8e-05 0.052 13.8 0.0 2 24 444 466 443 466 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF45-206 - 682 6.2e-20 71.0 52.6 9 15 0.0015 1.3 9.4 0.0 2 22 472 492 471 492 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF45-206 - 682 6.2e-20 71.0 52.6 10 15 1.7 1.5e+03 -0.4 0.2 2 21 500 519 499 520 0.80 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF45-206 - 682 6.2e-20 71.0 52.6 11 15 0.029 26 5.3 0.0 4 22 530 548 527 548 0.90 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF45-206 - 682 6.2e-20 71.0 52.6 12 15 0.043 39 4.7 0.2 4 20 558 574 555 575 0.90 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF45-206 - 682 6.2e-20 71.0 52.6 13 15 0.0079 7.1 7.0 0.1 2 22 584 604 583 604 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF45-206 - 682 6.2e-20 71.0 52.6 14 15 0.0022 2 8.8 0.1 2 22 612 632 611 632 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF45-206 - 682 6.2e-20 71.0 52.6 15 15 0.019 17 5.9 0.0 2 20 640 658 639 660 0.78 Zinc-finger double-stranded RNA-binding zf_UBZ PF18439.1 32 ZNF45-206 - 682 1.1e-15 56.9 59.0 1 15 0.045 40 3.9 0.1 3 21 192 211 190 211 0.82 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF45-206 - 682 1.1e-15 56.9 59.0 2 15 0.12 1.1e+02 2.5 0.1 3 9 276 282 274 292 0.82 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF45-206 - 682 1.1e-15 56.9 59.0 3 15 0.0013 1.2 8.8 0.2 3 20 304 322 302 323 0.76 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF45-206 - 682 1.1e-15 56.9 59.0 4 15 0.083 74 3.1 0.1 3 13 332 342 330 347 0.86 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF45-206 - 682 1.1e-15 56.9 59.0 5 15 0.0016 1.4 8.6 0.2 3 21 360 379 358 379 0.85 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF45-206 - 682 1.1e-15 56.9 59.0 6 15 0.027 24 4.6 0.5 3 12 388 397 386 407 0.83 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF45-206 - 682 1.1e-15 56.9 59.0 7 15 0.023 20 4.9 0.1 3 15 416 428 414 434 0.81 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF45-206 - 682 1.1e-15 56.9 59.0 8 15 0.0014 1.3 8.7 0.1 3 21 444 463 442 463 0.86 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF45-206 - 682 1.1e-15 56.9 59.0 9 15 0.09 81 2.9 0.0 3 16 472 486 470 490 0.80 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF45-206 - 682 1.1e-15 56.9 59.0 10 15 0.00045 0.4 10.3 0.1 3 20 500 518 498 519 0.85 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF45-206 - 682 1.1e-15 56.9 59.0 11 15 0.00041 0.37 10.4 0.0 3 21 528 547 526 547 0.93 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF45-206 - 682 1.1e-15 56.9 59.0 12 15 0.024 21 4.8 0.5 3 11 556 564 554 574 0.86 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF45-206 - 682 1.1e-15 56.9 59.0 13 15 0.061 55 3.5 0.1 3 17 584 599 582 603 0.75 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF45-206 - 682 1.1e-15 56.9 59.0 14 15 0.0019 1.7 8.3 0.1 3 20 612 630 610 631 0.77 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF45-206 - 682 1.1e-15 56.9 59.0 15 15 0.011 10 5.8 0.1 3 13 640 650 638 656 0.86 Ubiquitin-Binding Zinc Finger Zn-ribbon_8 PF09723.10 40 ZNF45-206 - 682 9.9e-14 51.2 93.1 1 15 0.0052 4.7 7.4 0.3 6 21 192 207 189 214 0.85 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF45-206 - 682 9.9e-14 51.2 93.1 2 15 0.012 10 6.3 6.4 6 34 276 311 275 312 0.87 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF45-206 - 682 9.9e-14 51.2 93.1 3 15 0.00012 0.11 12.7 4.0 6 34 304 339 303 342 0.84 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF45-206 - 682 9.9e-14 51.2 93.1 4 15 0.00073 0.66 10.2 6.1 6 34 332 367 331 367 0.91 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF45-206 - 682 9.9e-14 51.2 93.1 5 15 0.00054 0.48 10.6 7.5 6 34 360 395 359 400 0.84 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF45-206 - 682 9.9e-14 51.2 93.1 6 15 0.011 9.7 6.4 6.9 6 36 388 425 387 428 0.85 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF45-206 - 682 9.9e-14 51.2 93.1 7 15 0.0022 1.9 8.6 5.1 6 34 416 451 415 453 0.83 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF45-206 - 682 9.9e-14 51.2 93.1 8 15 0.00018 0.16 12.1 3.4 6 36 444 481 443 484 0.89 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF45-206 - 682 9.9e-14 51.2 93.1 9 15 0.00066 0.59 10.3 4.4 6 35 472 508 471 511 0.91 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF45-206 - 682 9.9e-14 51.2 93.1 10 15 0.00014 0.12 12.5 4.9 6 34 500 535 499 535 0.91 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF45-206 - 682 9.9e-14 51.2 93.1 11 15 0.007 6.2 7.0 9.0 6 34 528 563 527 568 0.89 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF45-206 - 682 9.9e-14 51.2 93.1 12 15 0.051 46 4.2 1.8 6 15 556 565 555 574 0.89 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF45-206 - 682 9.9e-14 51.2 93.1 13 15 0.0019 1.7 8.8 5.9 6 33 584 618 583 618 0.93 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF45-206 - 682 9.9e-14 51.2 93.1 14 15 1.6e-05 0.015 15.4 4.5 6 34 612 647 611 650 0.93 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF45-206 - 682 9.9e-14 51.2 93.1 15 15 0.0048 4.3 7.5 0.5 6 16 640 650 639 666 0.75 Zinc ribbon domain zf-met PF12874.7 25 ZNF45-206 - 682 5.9e-11 42.4 86.6 1 15 4.9 4.4e+03 -1.7 0.0 15 21 174 180 172 182 0.85 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF45-206 - 682 5.9e-11 42.4 86.6 2 15 0.0028 2.5 8.6 0.3 1 21 276 296 276 299 0.94 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF45-206 - 682 5.9e-11 42.4 86.6 3 15 0.036 33 5.1 0.4 1 21 304 324 304 327 0.88 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF45-206 - 682 5.9e-11 42.4 86.6 4 15 0.0034 3 8.4 4.6 1 22 332 353 332 355 0.92 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF45-206 - 682 5.9e-11 42.4 86.6 5 15 0.23 2e+02 2.5 0.6 1 22 360 381 360 383 0.85 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF45-206 - 682 5.9e-11 42.4 86.6 6 15 0.0003 0.27 11.7 0.8 1 23 388 410 388 411 0.95 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF45-206 - 682 5.9e-11 42.4 86.6 7 15 0.00027 0.25 11.8 0.2 1 21 416 436 416 439 0.94 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF45-206 - 682 5.9e-11 42.4 86.6 8 15 0.00053 0.48 10.9 0.4 1 23 444 466 444 467 0.95 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF45-206 - 682 5.9e-11 42.4 86.6 9 15 0.0045 4.1 7.9 0.8 1 22 472 493 472 495 0.91 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF45-206 - 682 5.9e-11 42.4 86.6 10 15 1.3 1.2e+03 0.1 0.2 1 11 500 510 500 520 0.77 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF45-206 - 682 5.9e-11 42.4 86.6 11 15 0.43 3.8e+02 1.7 0.0 1 20 528 547 528 548 0.89 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF45-206 - 682 5.9e-11 42.4 86.6 12 15 0.0042 3.8 8.0 0.4 1 19 556 574 556 575 0.97 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF45-206 - 682 5.9e-11 42.4 86.6 13 15 0.00013 0.11 12.9 0.2 1 21 584 604 584 606 0.93 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF45-206 - 682 5.9e-11 42.4 86.6 14 15 0.064 57 4.3 0.9 1 20 612 631 612 634 0.90 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF45-206 - 682 5.9e-11 42.4 86.6 15 15 0.42 3.8e+02 1.7 0.2 1 19 640 658 640 662 0.83 Zinc-finger of C2H2 type XPA_N PF01286.18 32 ZNF45-206 - 682 9.2e-11 41.6 66.5 1 15 0.23 2.1e+02 2.1 0.2 3 11 193 201 191 203 0.87 XPA protein N-terminal XPA_N PF01286.18 32 ZNF45-206 - 682 9.2e-11 41.6 66.5 2 15 0.024 22 5.2 0.1 3 16 277 291 275 296 0.79 XPA protein N-terminal XPA_N PF01286.18 32 ZNF45-206 - 682 9.2e-11 41.6 66.5 3 15 0.0073 6.5 6.9 0.1 3 11 305 313 303 320 0.90 XPA protein N-terminal XPA_N PF01286.18 32 ZNF45-206 - 682 9.2e-11 41.6 66.5 4 15 0.1 90 3.2 0.1 3 14 333 344 331 349 0.86 XPA protein N-terminal XPA_N PF01286.18 32 ZNF45-206 - 682 9.2e-11 41.6 66.5 5 15 0.008 7.2 6.8 0.1 3 12 361 370 359 376 0.89 XPA protein N-terminal XPA_N PF01286.18 32 ZNF45-206 - 682 9.2e-11 41.6 66.5 6 15 0.0037 3.4 7.8 0.6 3 13 389 399 387 406 0.80 XPA protein N-terminal XPA_N PF01286.18 32 ZNF45-206 - 682 9.2e-11 41.6 66.5 7 15 0.051 46 4.2 0.2 3 14 417 428 415 431 0.90 XPA protein N-terminal XPA_N PF01286.18 32 ZNF45-206 - 682 9.2e-11 41.6 66.5 8 15 0.004 3.6 7.7 0.1 3 13 445 455 443 462 0.85 XPA protein N-terminal XPA_N PF01286.18 32 ZNF45-206 - 682 9.2e-11 41.6 66.5 9 15 0.25 2.2e+02 2.0 0.1 3 14 473 484 471 485 0.89 XPA protein N-terminal XPA_N PF01286.18 32 ZNF45-206 - 682 9.2e-11 41.6 66.5 10 15 0.054 49 4.1 0.2 3 12 501 510 499 512 0.89 XPA protein N-terminal XPA_N PF01286.18 32 ZNF45-206 - 682 9.2e-11 41.6 66.5 11 15 0.049 44 4.2 0.2 3 12 529 538 527 549 0.82 XPA protein N-terminal XPA_N PF01286.18 32 ZNF45-206 - 682 9.2e-11 41.6 66.5 12 15 0.016 14 5.8 1.1 3 12 557 566 555 569 0.88 XPA protein N-terminal XPA_N PF01286.18 32 ZNF45-206 - 682 9.2e-11 41.6 66.5 13 15 0.029 26 5.0 0.0 3 17 585 600 583 603 0.79 XPA protein N-terminal XPA_N PF01286.18 32 ZNF45-206 - 682 9.2e-11 41.6 66.5 14 15 0.002 1.8 8.7 0.2 3 17 613 627 611 630 0.81 XPA protein N-terminal XPA_N PF01286.18 32 ZNF45-206 - 682 9.2e-11 41.6 66.5 15 15 0.0055 5 7.3 0.2 3 13 641 651 639 653 0.86 XPA protein N-terminal C1_4 PF07975.12 55 ZNF45-206 - 682 3.1e-07 30.5 66.4 1 14 0.012 11 6.4 0.5 5 35 169 201 166 215 0.69 TFIIH C1-like domain C1_4 PF07975.12 55 ZNF45-206 - 682 3.1e-07 30.5 66.4 2 14 0.84 7.6e+02 0.5 0.2 24 35 274 285 259 300 0.75 TFIIH C1-like domain C1_4 PF07975.12 55 ZNF45-206 - 682 3.1e-07 30.5 66.4 3 14 0.0069 6.2 7.1 0.8 20 49 298 327 277 330 0.73 TFIIH C1-like domain C1_4 PF07975.12 55 ZNF45-206 - 682 3.1e-07 30.5 66.4 4 14 0.027 24 5.2 3.4 2 49 306 355 305 358 0.79 TFIIH C1-like domain C1_4 PF07975.12 55 ZNF45-206 - 682 3.1e-07 30.5 66.4 5 14 0.015 14 6.0 4.3 1 48 333 382 333 384 0.79 TFIIH C1-like domain C1_4 PF07975.12 55 ZNF45-206 - 682 3.1e-07 30.5 66.4 6 14 0.011 9.5 6.5 4.1 2 40 362 402 361 412 0.73 TFIIH C1-like domain C1_4 PF07975.12 55 ZNF45-206 - 682 3.1e-07 30.5 66.4 7 14 0.04 36 4.7 0.2 22 49 412 439 400 442 0.84 TFIIH C1-like domain C1_4 PF07975.12 55 ZNF45-206 - 682 3.1e-07 30.5 66.4 8 14 0.03 27 5.1 1.0 2 48 418 466 417 470 0.73 TFIIH C1-like domain C1_4 PF07975.12 55 ZNF45-206 - 682 3.1e-07 30.5 66.4 9 14 0.0014 1.3 9.3 0.8 2 49 446 495 445 498 0.87 TFIIH C1-like domain C1_4 PF07975.12 55 ZNF45-206 - 682 3.1e-07 30.5 66.4 10 14 0.1 92 3.4 0.1 25 49 499 523 495 525 0.84 TFIIH C1-like domain C1_4 PF07975.12 55 ZNF45-206 - 682 3.1e-07 30.5 66.4 11 14 0.00086 0.77 10.0 3.8 1 48 529 578 529 581 0.83 TFIIH C1-like domain C1_4 PF07975.12 55 ZNF45-206 - 682 3.1e-07 30.5 66.4 12 14 0.57 5.1e+02 1.0 0.1 23 35 581 593 567 608 0.76 TFIIH C1-like domain C1_4 PF07975.12 55 ZNF45-206 - 682 3.1e-07 30.5 66.4 13 14 0.0099 8.9 6.6 1.6 2 48 586 634 585 637 0.75 TFIIH C1-like domain C1_4 PF07975.12 55 ZNF45-206 - 682 3.1e-07 30.5 66.4 14 14 0.0037 3.3 8.0 0.8 2 49 614 663 613 664 0.74 TFIIH C1-like domain zf-C2H2_6 PF13912.6 27 ZNF45-206 - 682 6.1e-07 29.3 110.6 1 15 0.0014 1.3 9.1 0.9 2 24 192 214 192 217 0.92 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF45-206 - 682 6.1e-07 29.3 110.6 2 15 0.12 1.1e+02 3.0 0.5 2 12 276 286 276 287 0.91 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF45-206 - 682 6.1e-07 29.3 110.6 3 15 0.0046 4.1 7.5 1.7 2 12 304 314 304 314 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF45-206 - 682 6.1e-07 29.3 110.6 4 15 0.0095 8.5 6.5 2.6 2 13 332 343 332 352 0.90 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF45-206 - 682 6.1e-07 29.3 110.6 5 15 0.0024 2.2 8.4 1.7 2 24 360 382 360 385 0.92 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF45-206 - 682 6.1e-07 29.3 110.6 6 15 0.041 37 4.5 1.0 2 11 388 397 388 410 0.86 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF45-206 - 682 6.1e-07 29.3 110.6 7 15 0.039 35 4.5 0.2 2 12 416 426 416 427 0.91 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF45-206 - 682 6.1e-07 29.3 110.6 8 15 0.0046 4.2 7.5 0.7 2 22 444 464 444 468 0.82 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF45-206 - 682 6.1e-07 29.3 110.6 9 15 0.043 39 4.4 1.6 2 20 472 490 472 494 0.83 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF45-206 - 682 6.1e-07 29.3 110.6 10 15 0.049 44 4.2 1.3 2 22 500 520 500 524 0.84 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF45-206 - 682 6.1e-07 29.3 110.6 11 15 0.0009 0.8 9.8 2.6 2 24 528 550 528 553 0.95 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF45-206 - 682 6.1e-07 29.3 110.6 12 15 0.59 5.3e+02 0.8 2.8 2 11 556 565 556 566 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF45-206 - 682 6.1e-07 29.3 110.6 13 15 0.00022 0.2 11.7 0.1 2 12 584 594 584 601 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF45-206 - 682 6.1e-07 29.3 110.6 14 15 0.0023 2 8.5 0.5 2 12 612 622 612 624 0.95 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF45-206 - 682 6.1e-07 29.3 110.6 15 15 0.0099 8.9 6.4 0.3 2 12 640 650 640 662 0.84 C2H2-type zinc finger C1_1 PF00130.22 53 ZNF45-206 - 682 1e-06 28.5 71.5 1 13 0.11 96 3.0 0.2 9 24 189 205 157 214 0.75 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF45-206 - 682 1e-06 28.5 71.5 2 13 0.027 24 4.9 0.3 15 36 261 283 254 294 0.81 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF45-206 - 682 1e-06 28.5 71.5 3 13 0.008 7.2 6.6 2.8 5 34 297 337 294 337 0.74 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF45-206 - 682 1e-06 28.5 71.5 4 13 0.013 12 5.9 4.2 9 35 329 366 322 369 0.80 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF45-206 - 682 1e-06 28.5 71.5 5 13 0.14 1.2e+02 2.6 0.9 9 22 357 370 350 377 0.71 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF45-206 - 682 1e-06 28.5 71.5 6 13 0.0015 1.3 8.9 4.0 1 35 378 422 378 427 0.93 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF45-206 - 682 1e-06 28.5 71.5 7 13 0.00052 0.47 10.4 0.5 2 35 434 478 434 481 0.90 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF45-206 - 682 1e-06 28.5 71.5 8 13 0.018 16 5.5 2.0 9 36 469 507 461 511 0.80 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF45-206 - 682 1e-06 28.5 71.5 9 13 0.94 8.4e+02 -0.0 11.6 9 44 497 551 490 565 0.70 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF45-206 - 682 1e-06 28.5 71.5 10 13 0.35 3.2e+02 1.3 6.4 9 37 553 592 546 596 0.77 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF45-206 - 682 1e-06 28.5 71.5 11 13 0.00037 0.33 10.9 0.4 5 37 578 620 574 622 0.84 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF45-206 - 682 1e-06 28.5 71.5 12 13 0.0019 1.7 8.6 1.4 1 35 602 646 602 649 0.83 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF45-206 - 682 1e-06 28.5 71.5 13 13 0.037 33 4.5 0.2 1 22 630 651 630 661 0.75 Phorbol esters/diacylglycerol binding domain (C1 domain) # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF45-206.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF45-206.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF45-206.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF45-206.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF45-206.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:06:53 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZNF454-201 - 522 3.5e-88 286.4 102.4 1 13 0.00029 0.22 12.0 0.3 10 25 173 188 164 189 0.85 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF454-201 - 522 3.5e-88 286.4 102.4 2 13 2.6e-05 0.019 15.4 5.6 2 24 193 225 192 227 0.76 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF454-201 - 522 3.5e-88 286.4 102.4 3 13 1.3e-10 9.6e-08 32.1 2.7 2 25 231 254 230 254 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF454-201 - 522 3.5e-88 286.4 102.4 4 13 4.4e-12 3.3e-09 36.8 0.3 1 24 258 281 258 283 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF454-201 - 522 3.5e-88 286.4 102.4 5 13 1.7e-07 0.00013 22.2 6.6 2 25 287 310 286 311 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF454-201 - 522 3.5e-88 286.4 102.4 6 13 7.9e-10 5.9e-07 29.6 1.6 1 25 314 338 314 339 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF454-201 - 522 3.5e-88 286.4 102.4 7 13 1.9e-10 1.4e-07 31.6 0.5 4 24 345 365 342 366 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF454-201 - 522 3.5e-88 286.4 102.4 8 13 3.7e-11 2.8e-08 33.8 0.6 1 24 370 393 370 394 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF454-201 - 522 3.5e-88 286.4 102.4 9 13 7.7e-10 5.8e-07 29.7 1.2 2 24 399 421 398 422 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF454-201 - 522 3.5e-88 286.4 102.4 10 13 1e-10 7.8e-08 32.4 0.1 1 25 426 450 426 451 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF454-201 - 522 3.5e-88 286.4 102.4 11 13 5.3e-10 3.9e-07 30.2 1.2 1 24 454 477 454 479 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF454-201 - 522 3.5e-88 286.4 102.4 12 13 8.5e-12 6.4e-09 35.9 2.0 1 25 482 506 482 507 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF454-201 - 522 3.5e-88 286.4 102.4 13 13 0.15 1.1e+02 3.5 0.6 1 13 510 522 510 522 0.92 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZNF454-201 - 522 1.7e-66 217.1 95.9 1 12 9.5e-09 7.1e-06 26.2 0.9 1 23 178 200 178 200 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF454-201 - 522 1.7e-66 217.1 95.9 2 12 1.3e-06 0.00094 19.5 4.9 1 23 216 238 216 238 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF454-201 - 522 1.7e-66 217.1 95.9 3 12 5.8e-08 4.4e-05 23.7 0.5 1 23 244 266 244 266 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF454-201 - 522 1.7e-66 217.1 95.9 4 12 9.2e-07 0.00069 19.9 3.2 1 23 272 294 272 294 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF454-201 - 522 1.7e-66 217.1 95.9 5 12 4.1e-05 0.03 14.8 3.4 1 23 300 322 300 322 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF454-201 - 522 1.7e-66 217.1 95.9 6 12 6.4e-08 4.7e-05 23.6 0.9 1 23 328 350 328 350 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF454-201 - 522 1.7e-66 217.1 95.9 7 12 2.5e-08 1.9e-05 24.9 0.2 1 23 356 378 356 378 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF454-201 - 522 1.7e-66 217.1 95.9 8 12 1.5e-08 1.1e-05 25.6 1.0 1 23 384 406 384 406 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF454-201 - 522 1.7e-66 217.1 95.9 9 12 3e-08 2.2e-05 24.6 0.1 1 23 412 434 412 434 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF454-201 - 522 1.7e-66 217.1 95.9 10 12 1.1e-07 7.9e-05 22.9 1.3 1 23 440 462 440 462 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF454-201 - 522 1.7e-66 217.1 95.9 11 12 3.2e-08 2.4e-05 24.5 2.4 1 23 468 490 468 490 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF454-201 - 522 1.7e-66 217.1 95.9 12 12 3.3e-08 2.5e-05 24.5 1.9 1 23 496 518 496 518 0.99 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZNF454-201 - 522 1.3e-36 122.1 89.9 1 12 1.9e-06 0.0014 19.3 0.9 1 23 178 200 178 201 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF454-201 - 522 1.3e-36 122.1 89.9 2 12 0.00015 0.11 13.4 3.8 1 23 216 238 216 239 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF454-201 - 522 1.3e-36 122.1 89.9 3 12 3.4e-05 0.025 15.4 0.7 1 23 244 266 244 267 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF454-201 - 522 1.3e-36 122.1 89.9 4 12 0.0019 1.4 10.0 2.3 1 23 272 294 272 295 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF454-201 - 522 1.3e-36 122.1 89.9 5 12 9.9e-05 0.074 13.9 3.2 1 23 300 322 300 323 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF454-201 - 522 1.3e-36 122.1 89.9 6 12 2.4e-05 0.018 15.9 0.7 1 23 328 350 328 351 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF454-201 - 522 1.3e-36 122.1 89.9 7 12 0.00024 0.18 12.7 0.3 1 23 356 378 356 379 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF454-201 - 522 1.3e-36 122.1 89.9 8 12 8.4e-06 0.0063 17.3 0.6 1 23 384 406 384 407 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF454-201 - 522 1.3e-36 122.1 89.9 9 12 3.5e-05 0.026 15.4 0.2 1 23 412 434 412 435 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF454-201 - 522 1.3e-36 122.1 89.9 10 12 1.5e-05 0.011 16.5 0.9 1 23 440 462 440 463 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF454-201 - 522 1.3e-36 122.1 89.9 11 12 5.2e-05 0.039 14.8 1.7 1 23 468 490 468 491 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF454-201 - 522 1.3e-36 122.1 89.9 12 12 7.1e-05 0.053 14.4 0.9 1 23 496 518 496 519 0.89 C2H2-type zinc finger KRAB PF01352.27 42 ZNF454-201 - 522 4e-26 90.4 0.1 1 1 1e-28 7.5e-26 89.5 0.1 1 42 13 54 13 54 0.99 KRAB box zf-C2H2_jaz PF12171.8 27 ZNF454-201 - 522 4.7e-15 55.4 59.7 1 12 5.5e-05 0.041 14.2 0.4 2 22 178 198 177 198 0.96 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF454-201 - 522 4.7e-15 55.4 59.7 2 12 1 7.5e+02 0.6 0.4 2 12 216 226 215 236 0.81 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF454-201 - 522 4.7e-15 55.4 59.7 3 12 0.0099 7.4 7.0 0.2 2 22 244 264 243 264 0.89 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF454-201 - 522 4.7e-15 55.4 59.7 4 12 0.05 37 4.7 0.1 2 13 272 283 271 290 0.86 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF454-201 - 522 4.7e-15 55.4 59.7 5 12 0.36 2.7e+02 2.0 2.1 2 20 300 318 299 320 0.73 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF454-201 - 522 4.7e-15 55.4 59.7 6 12 0.0045 3.4 8.1 0.4 2 22 328 348 327 348 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF454-201 - 522 4.7e-15 55.4 59.7 7 12 0.05 37 4.8 0.0 2 22 356 376 355 376 0.90 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF454-201 - 522 4.7e-15 55.4 59.7 8 12 0.0028 2.1 8.7 0.2 2 22 384 404 383 404 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF454-201 - 522 4.7e-15 55.4 59.7 9 12 6.1e-05 0.045 14.0 0.0 2 22 412 432 411 432 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF454-201 - 522 4.7e-15 55.4 59.7 10 12 2.4e-05 0.018 15.3 0.4 2 22 440 460 439 460 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF454-201 - 522 4.7e-15 55.4 59.7 11 12 7.8e-05 0.058 13.7 0.5 2 22 468 488 467 488 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF454-201 - 522 4.7e-15 55.4 59.7 12 12 3.9 2.9e+03 -1.3 0.4 2 21 496 515 495 516 0.81 Zinc-finger double-stranded RNA-binding zf-C2H2_6 PF13912.6 27 ZNF454-201 - 522 2.6e-13 49.6 98.2 1 13 4.5e-06 0.0034 17.4 1.5 1 24 177 200 177 203 0.89 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF454-201 - 522 2.6e-13 49.6 98.2 2 13 0.054 41 4.3 5.8 1 20 215 234 215 239 0.78 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF454-201 - 522 2.6e-13 49.6 98.2 3 13 0.00044 0.33 11.0 1.0 2 18 244 260 244 268 0.77 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF454-201 - 522 2.6e-13 49.6 98.2 4 13 0.017 13 5.9 0.3 2 11 272 281 272 282 0.96 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF454-201 - 522 2.6e-13 49.6 98.2 5 13 3.5 2.6e+03 -1.4 1.9 20 26 286 292 284 293 0.88 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF454-201 - 522 2.6e-13 49.6 98.2 6 13 0.034 25 5.0 1.1 2 11 300 309 300 310 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF454-201 - 522 2.6e-13 49.6 98.2 7 13 0.0019 1.4 9.0 0.6 2 12 328 338 328 341 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF454-201 - 522 2.6e-13 49.6 98.2 8 13 0.00017 0.13 12.3 0.3 2 24 356 378 356 381 0.87 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF454-201 - 522 2.6e-13 49.6 98.2 9 13 0.002 1.5 8.9 0.4 2 12 384 394 384 395 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF454-201 - 522 2.6e-13 49.6 98.2 10 13 0.016 12 6.0 0.2 2 24 412 434 412 437 0.89 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF454-201 - 522 2.6e-13 49.6 98.2 11 13 0.00025 0.19 11.8 0.8 2 24 440 462 440 465 0.92 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF454-201 - 522 2.6e-13 49.6 98.2 12 13 0.055 41 4.3 3.4 2 12 468 478 468 490 0.77 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF454-201 - 522 2.6e-13 49.6 98.2 13 13 0.00011 0.085 12.9 1.6 2 24 496 518 496 520 0.98 C2H2-type zinc finger Zn-ribbon_8 PF09723.10 40 ZNF454-201 - 522 5e-09 36.1 61.0 1 12 0.0025 1.9 8.7 0.1 6 17 178 195 177 206 0.71 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF454-201 - 522 5e-09 36.1 61.0 2 12 3.1e-05 0.023 14.8 5.5 6 34 216 251 215 256 0.92 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF454-201 - 522 5e-09 36.1 61.0 3 12 0.0003 0.23 11.6 2.4 6 36 244 281 243 285 0.83 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF454-201 - 522 5e-09 36.1 61.0 4 12 0.1 78 3.5 2.0 6 34 272 307 271 313 0.78 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF454-201 - 522 5e-09 36.1 61.0 5 12 0.027 20 5.4 4.6 6 34 300 335 299 338 0.75 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF454-201 - 522 5e-09 36.1 61.0 6 12 4.1e-05 0.03 14.4 4.1 6 36 328 365 326 367 0.90 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF454-201 - 522 5e-09 36.1 61.0 7 12 9.9e-05 0.074 13.2 4.6 6 36 356 393 354 395 0.90 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF454-201 - 522 5e-09 36.1 61.0 8 12 0.003 2.3 8.4 2.9 6 34 384 419 383 422 0.81 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF454-201 - 522 5e-09 36.1 61.0 9 12 0.0065 4.9 7.4 1.3 6 34 412 447 411 452 0.90 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF454-201 - 522 5e-09 36.1 61.0 10 12 0.088 65 3.8 2.6 6 34 440 475 439 480 0.79 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF454-201 - 522 5e-09 36.1 61.0 11 12 0.0049 3.7 7.8 3.6 6 35 468 504 466 507 0.86 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF454-201 - 522 5e-09 36.1 61.0 12 12 0.0034 2.5 8.3 0.3 6 17 496 507 494 515 0.84 Zinc ribbon domain XPA_N PF01286.18 32 ZNF454-201 - 522 9.8e-07 28.7 51.4 1 12 0.023 17 5.5 0.5 3 14 179 190 177 195 0.89 XPA protein N-terminal XPA_N PF01286.18 32 ZNF454-201 - 522 9.8e-07 28.7 51.4 2 12 0.0007 0.52 10.4 0.1 3 14 217 228 215 232 0.91 XPA protein N-terminal XPA_N PF01286.18 32 ZNF454-201 - 522 9.8e-07 28.7 51.4 3 12 0.0034 2.6 8.2 0.2 3 14 245 256 243 259 0.90 XPA protein N-terminal XPA_N PF01286.18 32 ZNF454-201 - 522 9.8e-07 28.7 51.4 4 12 0.51 3.8e+02 1.2 0.2 3 11 273 281 271 283 0.87 XPA protein N-terminal XPA_N PF01286.18 32 ZNF454-201 - 522 9.8e-07 28.7 51.4 5 12 2.6 2e+03 -1.0 1.6 20 27 300 307 298 312 0.59 XPA protein N-terminal XPA_N PF01286.18 32 ZNF454-201 - 522 9.8e-07 28.7 51.4 6 12 0.002 1.5 8.9 0.2 3 14 329 340 327 345 0.89 XPA protein N-terminal XPA_N PF01286.18 32 ZNF454-201 - 522 9.8e-07 28.7 51.4 7 12 0.022 16 5.6 0.1 3 12 357 366 355 374 0.86 XPA protein N-terminal XPA_N PF01286.18 32 ZNF454-201 - 522 9.8e-07 28.7 51.4 8 12 0.0059 4.4 7.4 0.2 3 13 385 395 383 397 0.90 XPA protein N-terminal XPA_N PF01286.18 32 ZNF454-201 - 522 9.8e-07 28.7 51.4 9 12 0.46 3.4e+02 1.4 0.1 3 14 413 424 411 429 0.88 XPA protein N-terminal XPA_N PF01286.18 32 ZNF454-201 - 522 9.8e-07 28.7 51.4 10 12 0.35 2.6e+02 1.8 0.1 3 13 441 451 439 457 0.89 XPA protein N-terminal XPA_N PF01286.18 32 ZNF454-201 - 522 9.8e-07 28.7 51.4 11 12 0.17 1.3e+02 2.8 0.1 3 14 469 480 467 485 0.85 XPA protein N-terminal XPA_N PF01286.18 32 ZNF454-201 - 522 9.8e-07 28.7 51.4 12 12 0.029 22 5.2 0.1 3 13 497 507 495 509 0.87 XPA protein N-terminal # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF454-201.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF454-201.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF454-201.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF454-201.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF454-201.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:06:53 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZNF454-202 - 522 3.5e-88 286.4 102.4 1 13 0.00029 0.22 12.0 0.3 10 25 173 188 164 189 0.85 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF454-202 - 522 3.5e-88 286.4 102.4 2 13 2.6e-05 0.019 15.4 5.6 2 24 193 225 192 227 0.76 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF454-202 - 522 3.5e-88 286.4 102.4 3 13 1.3e-10 9.6e-08 32.1 2.7 2 25 231 254 230 254 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF454-202 - 522 3.5e-88 286.4 102.4 4 13 4.4e-12 3.3e-09 36.8 0.3 1 24 258 281 258 283 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF454-202 - 522 3.5e-88 286.4 102.4 5 13 1.7e-07 0.00013 22.2 6.6 2 25 287 310 286 311 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF454-202 - 522 3.5e-88 286.4 102.4 6 13 7.9e-10 5.9e-07 29.6 1.6 1 25 314 338 314 339 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF454-202 - 522 3.5e-88 286.4 102.4 7 13 1.9e-10 1.4e-07 31.6 0.5 4 24 345 365 342 366 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF454-202 - 522 3.5e-88 286.4 102.4 8 13 3.7e-11 2.8e-08 33.8 0.6 1 24 370 393 370 394 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF454-202 - 522 3.5e-88 286.4 102.4 9 13 7.7e-10 5.8e-07 29.7 1.2 2 24 399 421 398 422 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF454-202 - 522 3.5e-88 286.4 102.4 10 13 1e-10 7.8e-08 32.4 0.1 1 25 426 450 426 451 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF454-202 - 522 3.5e-88 286.4 102.4 11 13 5.3e-10 3.9e-07 30.2 1.2 1 24 454 477 454 479 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF454-202 - 522 3.5e-88 286.4 102.4 12 13 8.5e-12 6.4e-09 35.9 2.0 1 25 482 506 482 507 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF454-202 - 522 3.5e-88 286.4 102.4 13 13 0.15 1.1e+02 3.5 0.6 1 13 510 522 510 522 0.92 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZNF454-202 - 522 1.7e-66 217.1 95.9 1 12 9.5e-09 7.1e-06 26.2 0.9 1 23 178 200 178 200 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF454-202 - 522 1.7e-66 217.1 95.9 2 12 1.3e-06 0.00094 19.5 4.9 1 23 216 238 216 238 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF454-202 - 522 1.7e-66 217.1 95.9 3 12 5.8e-08 4.4e-05 23.7 0.5 1 23 244 266 244 266 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF454-202 - 522 1.7e-66 217.1 95.9 4 12 9.2e-07 0.00069 19.9 3.2 1 23 272 294 272 294 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF454-202 - 522 1.7e-66 217.1 95.9 5 12 4.1e-05 0.03 14.8 3.4 1 23 300 322 300 322 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF454-202 - 522 1.7e-66 217.1 95.9 6 12 6.4e-08 4.7e-05 23.6 0.9 1 23 328 350 328 350 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF454-202 - 522 1.7e-66 217.1 95.9 7 12 2.5e-08 1.9e-05 24.9 0.2 1 23 356 378 356 378 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF454-202 - 522 1.7e-66 217.1 95.9 8 12 1.5e-08 1.1e-05 25.6 1.0 1 23 384 406 384 406 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF454-202 - 522 1.7e-66 217.1 95.9 9 12 3e-08 2.2e-05 24.6 0.1 1 23 412 434 412 434 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF454-202 - 522 1.7e-66 217.1 95.9 10 12 1.1e-07 7.9e-05 22.9 1.3 1 23 440 462 440 462 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF454-202 - 522 1.7e-66 217.1 95.9 11 12 3.2e-08 2.4e-05 24.5 2.4 1 23 468 490 468 490 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF454-202 - 522 1.7e-66 217.1 95.9 12 12 3.3e-08 2.5e-05 24.5 1.9 1 23 496 518 496 518 0.99 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZNF454-202 - 522 1.3e-36 122.1 89.9 1 12 1.9e-06 0.0014 19.3 0.9 1 23 178 200 178 201 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF454-202 - 522 1.3e-36 122.1 89.9 2 12 0.00015 0.11 13.4 3.8 1 23 216 238 216 239 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF454-202 - 522 1.3e-36 122.1 89.9 3 12 3.4e-05 0.025 15.4 0.7 1 23 244 266 244 267 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF454-202 - 522 1.3e-36 122.1 89.9 4 12 0.0019 1.4 10.0 2.3 1 23 272 294 272 295 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF454-202 - 522 1.3e-36 122.1 89.9 5 12 9.9e-05 0.074 13.9 3.2 1 23 300 322 300 323 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF454-202 - 522 1.3e-36 122.1 89.9 6 12 2.4e-05 0.018 15.9 0.7 1 23 328 350 328 351 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF454-202 - 522 1.3e-36 122.1 89.9 7 12 0.00024 0.18 12.7 0.3 1 23 356 378 356 379 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF454-202 - 522 1.3e-36 122.1 89.9 8 12 8.4e-06 0.0063 17.3 0.6 1 23 384 406 384 407 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF454-202 - 522 1.3e-36 122.1 89.9 9 12 3.5e-05 0.026 15.4 0.2 1 23 412 434 412 435 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF454-202 - 522 1.3e-36 122.1 89.9 10 12 1.5e-05 0.011 16.5 0.9 1 23 440 462 440 463 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF454-202 - 522 1.3e-36 122.1 89.9 11 12 5.2e-05 0.039 14.8 1.7 1 23 468 490 468 491 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF454-202 - 522 1.3e-36 122.1 89.9 12 12 7.1e-05 0.053 14.4 0.9 1 23 496 518 496 519 0.89 C2H2-type zinc finger KRAB PF01352.27 42 ZNF454-202 - 522 4e-26 90.4 0.1 1 1 1e-28 7.5e-26 89.5 0.1 1 42 13 54 13 54 0.99 KRAB box zf-C2H2_jaz PF12171.8 27 ZNF454-202 - 522 4.7e-15 55.4 59.7 1 12 5.5e-05 0.041 14.2 0.4 2 22 178 198 177 198 0.96 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF454-202 - 522 4.7e-15 55.4 59.7 2 12 1 7.5e+02 0.6 0.4 2 12 216 226 215 236 0.81 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF454-202 - 522 4.7e-15 55.4 59.7 3 12 0.0099 7.4 7.0 0.2 2 22 244 264 243 264 0.89 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF454-202 - 522 4.7e-15 55.4 59.7 4 12 0.05 37 4.7 0.1 2 13 272 283 271 290 0.86 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF454-202 - 522 4.7e-15 55.4 59.7 5 12 0.36 2.7e+02 2.0 2.1 2 20 300 318 299 320 0.73 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF454-202 - 522 4.7e-15 55.4 59.7 6 12 0.0045 3.4 8.1 0.4 2 22 328 348 327 348 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF454-202 - 522 4.7e-15 55.4 59.7 7 12 0.05 37 4.8 0.0 2 22 356 376 355 376 0.90 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF454-202 - 522 4.7e-15 55.4 59.7 8 12 0.0028 2.1 8.7 0.2 2 22 384 404 383 404 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF454-202 - 522 4.7e-15 55.4 59.7 9 12 6.1e-05 0.045 14.0 0.0 2 22 412 432 411 432 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF454-202 - 522 4.7e-15 55.4 59.7 10 12 2.4e-05 0.018 15.3 0.4 2 22 440 460 439 460 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF454-202 - 522 4.7e-15 55.4 59.7 11 12 7.8e-05 0.058 13.7 0.5 2 22 468 488 467 488 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF454-202 - 522 4.7e-15 55.4 59.7 12 12 3.9 2.9e+03 -1.3 0.4 2 21 496 515 495 516 0.81 Zinc-finger double-stranded RNA-binding zf-C2H2_6 PF13912.6 27 ZNF454-202 - 522 2.6e-13 49.6 98.2 1 13 4.5e-06 0.0034 17.4 1.5 1 24 177 200 177 203 0.89 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF454-202 - 522 2.6e-13 49.6 98.2 2 13 0.054 41 4.3 5.8 1 20 215 234 215 239 0.78 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF454-202 - 522 2.6e-13 49.6 98.2 3 13 0.00044 0.33 11.0 1.0 2 18 244 260 244 268 0.77 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF454-202 - 522 2.6e-13 49.6 98.2 4 13 0.017 13 5.9 0.3 2 11 272 281 272 282 0.96 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF454-202 - 522 2.6e-13 49.6 98.2 5 13 3.5 2.6e+03 -1.4 1.9 20 26 286 292 284 293 0.88 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF454-202 - 522 2.6e-13 49.6 98.2 6 13 0.034 25 5.0 1.1 2 11 300 309 300 310 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF454-202 - 522 2.6e-13 49.6 98.2 7 13 0.0019 1.4 9.0 0.6 2 12 328 338 328 341 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF454-202 - 522 2.6e-13 49.6 98.2 8 13 0.00017 0.13 12.3 0.3 2 24 356 378 356 381 0.87 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF454-202 - 522 2.6e-13 49.6 98.2 9 13 0.002 1.5 8.9 0.4 2 12 384 394 384 395 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF454-202 - 522 2.6e-13 49.6 98.2 10 13 0.016 12 6.0 0.2 2 24 412 434 412 437 0.89 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF454-202 - 522 2.6e-13 49.6 98.2 11 13 0.00025 0.19 11.8 0.8 2 24 440 462 440 465 0.92 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF454-202 - 522 2.6e-13 49.6 98.2 12 13 0.055 41 4.3 3.4 2 12 468 478 468 490 0.77 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF454-202 - 522 2.6e-13 49.6 98.2 13 13 0.00011 0.085 12.9 1.6 2 24 496 518 496 520 0.98 C2H2-type zinc finger Zn-ribbon_8 PF09723.10 40 ZNF454-202 - 522 5e-09 36.1 61.0 1 12 0.0025 1.9 8.7 0.1 6 17 178 195 177 206 0.71 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF454-202 - 522 5e-09 36.1 61.0 2 12 3.1e-05 0.023 14.8 5.5 6 34 216 251 215 256 0.92 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF454-202 - 522 5e-09 36.1 61.0 3 12 0.0003 0.23 11.6 2.4 6 36 244 281 243 285 0.83 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF454-202 - 522 5e-09 36.1 61.0 4 12 0.1 78 3.5 2.0 6 34 272 307 271 313 0.78 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF454-202 - 522 5e-09 36.1 61.0 5 12 0.027 20 5.4 4.6 6 34 300 335 299 338 0.75 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF454-202 - 522 5e-09 36.1 61.0 6 12 4.1e-05 0.03 14.4 4.1 6 36 328 365 326 367 0.90 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF454-202 - 522 5e-09 36.1 61.0 7 12 9.9e-05 0.074 13.2 4.6 6 36 356 393 354 395 0.90 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF454-202 - 522 5e-09 36.1 61.0 8 12 0.003 2.3 8.4 2.9 6 34 384 419 383 422 0.81 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF454-202 - 522 5e-09 36.1 61.0 9 12 0.0065 4.9 7.4 1.3 6 34 412 447 411 452 0.90 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF454-202 - 522 5e-09 36.1 61.0 10 12 0.088 65 3.8 2.6 6 34 440 475 439 480 0.79 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF454-202 - 522 5e-09 36.1 61.0 11 12 0.0049 3.7 7.8 3.6 6 35 468 504 466 507 0.86 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF454-202 - 522 5e-09 36.1 61.0 12 12 0.0034 2.5 8.3 0.3 6 17 496 507 494 515 0.84 Zinc ribbon domain XPA_N PF01286.18 32 ZNF454-202 - 522 9.8e-07 28.7 51.4 1 12 0.023 17 5.5 0.5 3 14 179 190 177 195 0.89 XPA protein N-terminal XPA_N PF01286.18 32 ZNF454-202 - 522 9.8e-07 28.7 51.4 2 12 0.0007 0.52 10.4 0.1 3 14 217 228 215 232 0.91 XPA protein N-terminal XPA_N PF01286.18 32 ZNF454-202 - 522 9.8e-07 28.7 51.4 3 12 0.0034 2.6 8.2 0.2 3 14 245 256 243 259 0.90 XPA protein N-terminal XPA_N PF01286.18 32 ZNF454-202 - 522 9.8e-07 28.7 51.4 4 12 0.51 3.8e+02 1.2 0.2 3 11 273 281 271 283 0.87 XPA protein N-terminal XPA_N PF01286.18 32 ZNF454-202 - 522 9.8e-07 28.7 51.4 5 12 2.6 2e+03 -1.0 1.6 20 27 300 307 298 312 0.59 XPA protein N-terminal XPA_N PF01286.18 32 ZNF454-202 - 522 9.8e-07 28.7 51.4 6 12 0.002 1.5 8.9 0.2 3 14 329 340 327 345 0.89 XPA protein N-terminal XPA_N PF01286.18 32 ZNF454-202 - 522 9.8e-07 28.7 51.4 7 12 0.022 16 5.6 0.1 3 12 357 366 355 374 0.86 XPA protein N-terminal XPA_N PF01286.18 32 ZNF454-202 - 522 9.8e-07 28.7 51.4 8 12 0.0059 4.4 7.4 0.2 3 13 385 395 383 397 0.90 XPA protein N-terminal XPA_N PF01286.18 32 ZNF454-202 - 522 9.8e-07 28.7 51.4 9 12 0.46 3.4e+02 1.4 0.1 3 14 413 424 411 429 0.88 XPA protein N-terminal XPA_N PF01286.18 32 ZNF454-202 - 522 9.8e-07 28.7 51.4 10 12 0.35 2.6e+02 1.8 0.1 3 13 441 451 439 457 0.89 XPA protein N-terminal XPA_N PF01286.18 32 ZNF454-202 - 522 9.8e-07 28.7 51.4 11 12 0.17 1.3e+02 2.8 0.1 3 14 469 480 467 485 0.85 XPA protein N-terminal XPA_N PF01286.18 32 ZNF454-202 - 522 9.8e-07 28.7 51.4 12 12 0.029 22 5.2 0.1 3 13 497 507 495 509 0.87 XPA protein N-terminal # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF454-202.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF454-202.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF454-202.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF454-202.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF454-202.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:06:54 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF454-203.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF454-203.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF454-203.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF454-203.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF454-203.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:06:54 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZNF460-201 - 562 1.9e-85 277.8 73.3 1 13 5.9e-05 0.038 14.4 0.1 11 25 192 206 183 207 0.80 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF460-201 - 562 1.9e-85 277.8 73.3 2 13 3.8e-08 2.4e-05 24.5 1.7 1 25 210 234 210 235 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF460-201 - 562 1.9e-85 277.8 73.3 3 13 5e-10 3.2e-07 30.5 1.5 1 25 238 262 238 263 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF460-201 - 562 1.9e-85 277.8 73.3 4 13 4.9e-11 3.1e-08 33.7 1.5 1 25 266 290 266 291 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF460-201 - 562 1.9e-85 277.8 73.3 5 13 1.3e-06 0.00083 19.7 1.3 1 24 294 317 294 318 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF460-201 - 562 1.9e-85 277.8 73.3 6 13 2.2e-09 1.4e-06 28.4 0.3 1 25 322 346 322 347 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF460-201 - 562 1.9e-85 277.8 73.3 7 13 2.5e-11 1.6e-08 34.6 2.5 1 26 350 375 350 375 0.97 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF460-201 - 562 1.9e-85 277.8 73.3 8 13 2.3e-09 1.5e-06 28.4 0.9 4 25 381 402 379 402 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF460-201 - 562 1.9e-85 277.8 73.3 9 13 1e-10 6.4e-08 32.7 0.2 1 26 406 431 406 431 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF460-201 - 562 1.9e-85 277.8 73.3 10 13 2.2e-10 1.4e-07 31.6 0.0 1 24 434 457 434 457 0.97 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF460-201 - 562 1.9e-85 277.8 73.3 11 13 2.1e-11 1.4e-08 34.8 0.2 1 25 462 486 462 487 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF460-201 - 562 1.9e-85 277.8 73.3 12 13 0.0041 2.6 8.6 0.1 2 16 491 505 491 514 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF460-201 - 562 1.9e-85 277.8 73.3 13 13 4.2 2.7e+03 -0.9 0.0 2 14 519 531 518 533 0.81 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZNF460-201 - 562 3.5e-50 165.8 81.5 1 11 7.2e-06 0.0046 17.3 1.2 1 23 196 218 196 218 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF460-201 - 562 3.5e-50 165.8 81.5 2 11 5.4e-09 3.4e-06 27.2 4.3 1 23 224 246 224 246 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF460-201 - 562 3.5e-50 165.8 81.5 3 11 1e-08 6.5e-06 26.3 2.2 1 23 252 274 252 274 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF460-201 - 562 3.5e-50 165.8 81.5 4 11 5.8e-07 0.00037 20.8 1.0 1 23 280 302 280 302 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF460-201 - 562 3.5e-50 165.8 81.5 5 11 0.00032 0.21 12.1 0.1 1 23 308 330 308 330 0.94 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF460-201 - 562 3.5e-50 165.8 81.5 6 11 4e-05 0.026 15.0 4.2 1 23 336 358 336 358 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF460-201 - 562 3.5e-50 165.8 81.5 7 11 9.1e-06 0.0058 17.0 1.5 1 23 364 386 364 386 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF460-201 - 562 3.5e-50 165.8 81.5 8 11 2.5e-06 0.0016 18.8 0.3 1 23 392 414 392 414 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF460-201 - 562 3.5e-50 165.8 81.5 9 11 2.8e-06 0.0018 18.6 0.2 1 20 420 439 420 442 0.95 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF460-201 - 562 3.5e-50 165.8 81.5 10 11 2.7e-05 0.017 15.5 1.6 1 23 448 470 448 470 0.95 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF460-201 - 562 3.5e-50 165.8 81.5 11 11 1.2e-08 7.8e-06 26.1 0.4 1 23 476 498 476 498 0.98 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZNF460-201 - 562 5.2e-30 101.5 80.4 1 11 0.00021 0.14 13.1 1.0 3 22 198 217 196 219 0.77 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF460-201 - 562 5.2e-30 101.5 80.4 2 11 1.2e-05 0.0076 17.0 2.4 1 23 224 246 224 247 0.97 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF460-201 - 562 5.2e-30 101.5 80.4 3 11 1.8e-05 0.012 16.4 1.7 1 23 252 274 252 275 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF460-201 - 562 5.2e-30 101.5 80.4 4 11 0.02 13 6.9 0.8 1 19 280 298 280 302 0.80 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF460-201 - 562 5.2e-30 101.5 80.4 5 11 0.00024 0.15 13.0 0.1 1 23 308 330 308 331 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF460-201 - 562 5.2e-30 101.5 80.4 6 11 6.7e-05 0.043 14.7 3.9 1 23 336 358 336 359 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF460-201 - 562 5.2e-30 101.5 80.4 7 11 0.00081 0.52 11.3 1.6 1 23 364 386 364 387 0.89 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF460-201 - 562 5.2e-30 101.5 80.4 8 11 1.9e-05 0.012 16.4 0.3 1 23 392 414 392 415 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF460-201 - 562 5.2e-30 101.5 80.4 9 11 8.9e-05 0.057 14.3 0.3 1 23 420 442 420 443 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF460-201 - 562 5.2e-30 101.5 80.4 10 11 0.00012 0.08 13.8 1.3 1 23 448 470 448 471 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF460-201 - 562 5.2e-30 101.5 80.4 11 11 4e-05 0.026 15.4 0.3 1 23 476 498 476 499 0.95 C2H2-type zinc finger KRAB PF01352.27 42 ZNF460-201 - 562 3.6e-21 74.5 0.5 1 1 9.6e-24 6.1e-21 73.8 0.5 1 42 12 53 12 53 0.99 KRAB box zf-C2H2_jaz PF12171.8 27 ZNF460-201 - 562 3.3e-12 46.4 39.7 1 11 0.01 6.7 7.1 0.0 2 20 196 214 195 214 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF460-201 - 562 3.3e-12 46.4 39.7 2 11 0.0002 0.13 12.6 0.4 2 24 224 246 223 247 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF460-201 - 562 3.3e-12 46.4 39.7 3 11 0.011 6.9 7.1 0.0 2 22 252 272 251 272 0.90 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF460-201 - 562 3.3e-12 46.4 39.7 4 11 0.13 84 3.6 0.7 2 24 280 302 279 303 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF460-201 - 562 3.3e-12 46.4 39.7 5 11 0.0059 3.8 7.9 0.0 2 21 308 327 307 328 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF460-201 - 562 3.3e-12 46.4 39.7 6 11 0.0076 4.8 7.6 1.3 2 22 336 356 335 356 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF460-201 - 562 3.3e-12 46.4 39.7 7 11 0.64 4.1e+02 1.4 0.2 2 22 364 384 363 384 0.87 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF460-201 - 562 3.3e-12 46.4 39.7 8 11 0.0082 5.2 7.5 0.1 2 22 392 412 391 412 0.89 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF460-201 - 562 3.3e-12 46.4 39.7 9 11 0.093 59 4.1 0.0 2 20 420 438 419 439 0.90 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF460-201 - 562 3.3e-12 46.4 39.7 10 11 2.2 1.4e+03 -0.3 0.5 2 11 448 457 447 468 0.75 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF460-201 - 562 3.3e-12 46.4 39.7 11 11 0.0073 4.6 7.6 0.0 2 21 476 495 475 496 0.84 Zinc-finger double-stranded RNA-binding Zn-ribbon_8 PF09723.10 40 ZNF460-201 - 562 1.9e-10 40.7 50.2 1 9 0.033 21 5.3 0.1 28 35 196 204 185 210 0.71 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF460-201 - 562 1.9e-10 40.7 50.2 2 9 5.7e-05 0.037 14.2 2.5 6 38 224 263 223 264 0.86 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF460-201 - 562 1.9e-10 40.7 50.2 3 9 0.00029 0.19 11.9 2.4 6 35 252 288 251 290 0.88 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF460-201 - 562 1.9e-10 40.7 50.2 4 9 0.00014 0.089 12.9 1.9 6 34 280 315 279 319 0.88 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF460-201 - 562 1.9e-10 40.7 50.2 5 9 0.01 6.6 6.9 5.0 6 35 336 372 335 375 0.81 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF460-201 - 562 1.9e-10 40.7 50.2 6 9 0.00065 0.42 10.8 3.6 6 34 364 399 362 407 0.86 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF460-201 - 562 1.9e-10 40.7 50.2 7 9 0.00023 0.15 12.2 1.5 6 35 420 456 419 461 0.78 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF460-201 - 562 1.9e-10 40.7 50.2 8 9 0.012 7.8 6.7 4.0 6 38 448 487 447 489 0.80 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF460-201 - 562 1.9e-10 40.7 50.2 9 9 0.0081 5.2 7.3 0.3 6 20 476 490 475 504 0.80 Zinc ribbon domain zf-C2H2_6 PF13912.6 27 ZNF460-201 - 562 5.9e-09 35.7 75.0 1 11 0.0094 6 7.0 0.5 2 13 196 207 196 218 0.81 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF460-201 - 562 5.9e-09 35.7 75.0 2 11 0.033 21 5.2 2.2 2 24 224 246 224 248 0.91 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF460-201 - 562 5.9e-09 35.7 75.0 3 11 0.00011 0.074 13.1 1.2 2 24 252 274 252 277 0.89 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF460-201 - 562 5.9e-09 35.7 75.0 4 11 0.0016 1 9.4 1.1 2 24 280 302 280 305 0.84 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF460-201 - 562 5.9e-09 35.7 75.0 5 11 0.0075 4.8 7.3 0.4 2 20 308 326 308 330 0.83 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF460-201 - 562 5.9e-09 35.7 75.0 6 11 0.78 5e+02 0.9 4.7 2 12 336 346 336 357 0.73 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF460-201 - 562 5.9e-09 35.7 75.0 7 11 0.009 5.8 7.0 1.3 2 12 364 374 364 377 0.88 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF460-201 - 562 5.9e-09 35.7 75.0 8 11 0.0004 0.26 11.4 0.1 2 17 392 407 392 410 0.78 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF460-201 - 562 5.9e-09 35.7 75.0 9 11 0.014 9 6.4 0.2 2 20 420 438 420 439 0.84 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF460-201 - 562 5.9e-09 35.7 75.0 10 11 0.079 51 4.0 0.8 2 20 448 466 448 470 0.89 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF460-201 - 562 5.9e-09 35.7 75.0 11 11 0.011 7.1 6.8 0.1 2 12 476 486 476 498 0.90 C2H2-type zinc finger XPA_N PF01286.18 32 ZNF460-201 - 562 2.4e-08 33.9 43.7 1 11 0.0051 3.3 7.8 0.1 3 15 197 209 195 214 0.87 XPA protein N-terminal XPA_N PF01286.18 32 ZNF460-201 - 562 2.4e-08 33.9 43.7 2 11 0.018 12 6.1 0.1 3 11 225 233 223 240 0.89 XPA protein N-terminal XPA_N PF01286.18 32 ZNF460-201 - 562 2.4e-08 33.9 43.7 3 11 0.13 82 3.4 0.1 3 12 253 262 252 269 0.89 XPA protein N-terminal XPA_N PF01286.18 32 ZNF460-201 - 562 2.4e-08 33.9 43.7 4 11 0.044 28 4.9 0.1 3 12 281 290 280 292 0.90 XPA protein N-terminal XPA_N PF01286.18 32 ZNF460-201 - 562 2.4e-08 33.9 43.7 5 11 0.024 15 5.7 0.2 4 14 310 320 308 328 0.81 XPA protein N-terminal XPA_N PF01286.18 32 ZNF460-201 - 562 2.4e-08 33.9 43.7 6 11 0.024 16 5.7 1.0 3 11 337 345 335 351 0.91 XPA protein N-terminal XPA_N PF01286.18 32 ZNF460-201 - 562 2.4e-08 33.9 43.7 7 11 0.23 1.5e+02 2.5 0.2 3 12 365 374 364 375 0.88 XPA protein N-terminal XPA_N PF01286.18 32 ZNF460-201 - 562 2.4e-08 33.9 43.7 8 11 0.015 9.9 6.3 0.2 3 12 393 402 391 412 0.89 XPA protein N-terminal XPA_N PF01286.18 32 ZNF460-201 - 562 2.4e-08 33.9 43.7 9 11 0.051 33 4.6 0.1 3 12 421 430 419 431 0.89 XPA protein N-terminal XPA_N PF01286.18 32 ZNF460-201 - 562 2.4e-08 33.9 43.7 10 11 0.029 19 5.4 0.1 3 13 449 459 447 469 0.76 XPA protein N-terminal XPA_N PF01286.18 32 ZNF460-201 - 562 2.4e-08 33.9 43.7 11 11 0.028 18 5.5 0.1 3 11 477 485 475 487 0.88 XPA protein N-terminal # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF460-201.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF460-201.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF460-201.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF460-201.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF460-201.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:06:54 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZNF460-202 - 521 3.6e-85 276.9 75.8 1 13 5.6e-05 0.035 14.6 0.1 11 25 151 165 142 166 0.80 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF460-202 - 521 3.6e-85 276.9 75.8 2 13 3.6e-08 2.2e-05 24.6 1.7 1 25 169 193 169 194 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF460-202 - 521 3.6e-85 276.9 75.8 3 13 4.7e-10 2.9e-07 30.6 1.5 1 25 197 221 197 222 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF460-202 - 521 3.6e-85 276.9 75.8 4 13 4.6e-11 2.9e-08 33.8 1.5 1 25 225 249 225 250 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF460-202 - 521 3.6e-85 276.9 75.8 5 13 1.2e-06 0.00076 19.8 1.3 1 24 253 276 253 277 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF460-202 - 521 3.6e-85 276.9 75.8 6 13 2.1e-09 1.3e-06 28.5 0.3 1 25 281 305 281 306 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF460-202 - 521 3.6e-85 276.9 75.8 7 13 2.4e-11 1.5e-08 34.7 2.5 1 26 309 334 309 334 0.97 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF460-202 - 521 3.6e-85 276.9 75.8 8 13 2.2e-09 1.3e-06 28.5 0.9 4 25 340 361 338 361 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF460-202 - 521 3.6e-85 276.9 75.8 9 13 9.5e-11 5.9e-08 32.8 0.2 1 26 365 390 365 390 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF460-202 - 521 3.6e-85 276.9 75.8 10 13 2.1e-10 1.3e-07 31.7 0.0 1 24 393 416 393 416 0.97 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF460-202 - 521 3.6e-85 276.9 75.8 11 13 2e-11 1.2e-08 34.9 0.2 1 25 421 445 421 446 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF460-202 - 521 3.6e-85 276.9 75.8 12 13 0.0039 2.4 8.7 0.1 2 16 450 464 450 473 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF460-202 - 521 3.6e-85 276.9 75.8 13 13 4 2.5e+03 -0.8 0.0 2 14 478 490 477 492 0.81 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZNF460-202 - 521 1.3e-50 167.1 81.5 1 11 6.8e-06 0.0042 17.5 1.2 1 23 155 177 155 177 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF460-202 - 521 1.3e-50 167.1 81.5 2 11 5.1e-09 3.1e-06 27.3 4.3 1 23 183 205 183 205 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF460-202 - 521 1.3e-50 167.1 81.5 3 11 9.6e-09 5.9e-06 26.4 2.2 1 23 211 233 211 233 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF460-202 - 521 1.3e-50 167.1 81.5 4 11 5.5e-07 0.00034 20.9 1.0 1 23 239 261 239 261 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF460-202 - 521 1.3e-50 167.1 81.5 5 11 0.00031 0.19 12.3 0.1 1 23 267 289 267 289 0.94 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF460-202 - 521 1.3e-50 167.1 81.5 6 11 3.8e-05 0.024 15.1 4.2 1 23 295 317 295 317 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF460-202 - 521 1.3e-50 167.1 81.5 7 11 8.6e-06 0.0053 17.1 1.5 1 23 323 345 323 345 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF460-202 - 521 1.3e-50 167.1 81.5 8 11 2.4e-06 0.0015 18.9 0.3 1 23 351 373 351 373 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF460-202 - 521 1.3e-50 167.1 81.5 9 11 2.7e-06 0.0017 18.7 0.2 1 20 379 398 379 401 0.95 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF460-202 - 521 1.3e-50 167.1 81.5 10 11 2.5e-05 0.016 15.7 1.6 1 23 407 429 407 429 0.95 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF460-202 - 521 1.3e-50 167.1 81.5 11 11 1.2e-08 7.1e-06 26.2 0.4 1 23 435 457 435 457 0.98 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZNF460-202 - 521 1.9e-30 102.9 80.4 1 11 0.0002 0.12 13.2 1.0 3 22 157 176 155 178 0.77 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF460-202 - 521 1.9e-30 102.9 80.4 2 11 1.1e-05 0.0069 17.1 2.4 1 23 183 205 183 206 0.97 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF460-202 - 521 1.9e-30 102.9 80.4 3 11 1.7e-05 0.011 16.5 1.7 1 23 211 233 211 234 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF460-202 - 521 1.9e-30 102.9 80.4 4 11 0.019 12 7.1 0.8 1 19 239 257 239 261 0.80 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF460-202 - 521 1.9e-30 102.9 80.4 5 11 0.00022 0.14 13.1 0.1 1 23 267 289 267 290 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF460-202 - 521 1.9e-30 102.9 80.4 6 11 6.4e-05 0.039 14.8 3.9 1 23 295 317 295 318 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF460-202 - 521 1.9e-30 102.9 80.4 7 11 0.00077 0.47 11.4 1.6 1 23 323 345 323 346 0.89 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF460-202 - 521 1.9e-30 102.9 80.4 8 11 1.8e-05 0.011 16.5 0.3 1 23 351 373 351 374 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF460-202 - 521 1.9e-30 102.9 80.4 9 11 8.5e-05 0.052 14.4 0.3 1 23 379 401 379 402 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF460-202 - 521 1.9e-30 102.9 80.4 10 11 0.00012 0.073 13.9 1.3 1 23 407 429 407 430 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF460-202 - 521 1.9e-30 102.9 80.4 11 11 3.8e-05 0.023 15.5 0.3 1 23 435 457 435 458 0.95 C2H2-type zinc finger zf-C2H2_jaz PF12171.8 27 ZNF460-202 - 521 1.3e-12 47.7 39.6 1 11 0.0099 6.1 7.3 0.0 2 20 155 173 154 173 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF460-202 - 521 1.3e-12 47.7 39.6 2 11 0.00019 0.12 12.7 0.4 2 24 183 205 182 206 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF460-202 - 521 1.3e-12 47.7 39.6 3 11 0.01 6.3 7.2 0.0 2 22 211 231 210 231 0.90 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF460-202 - 521 1.3e-12 47.7 39.6 4 11 0.12 77 3.7 0.7 2 24 239 261 238 262 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF460-202 - 521 1.3e-12 47.7 39.6 5 11 0.0056 3.5 8.0 0.0 2 21 267 286 266 287 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF460-202 - 521 1.3e-12 47.7 39.6 6 11 0.0072 4.4 7.7 1.3 2 22 295 315 294 315 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF460-202 - 521 1.3e-12 47.7 39.6 7 11 0.6 3.7e+02 1.6 0.2 2 22 323 343 322 343 0.87 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF460-202 - 521 1.3e-12 47.7 39.6 8 11 0.0077 4.8 7.6 0.1 2 22 351 371 350 371 0.89 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF460-202 - 521 1.3e-12 47.7 39.6 9 11 0.088 55 4.2 0.0 2 20 379 397 378 398 0.90 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF460-202 - 521 1.3e-12 47.7 39.6 10 11 2.1 1.3e+03 -0.1 0.5 2 11 407 416 406 427 0.75 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF460-202 - 521 1.3e-12 47.7 39.6 11 11 0.0069 4.3 7.8 0.0 2 21 435 454 434 455 0.84 Zinc-finger double-stranded RNA-binding Zn-ribbon_8 PF09723.10 40 ZNF460-202 - 521 7.4e-11 42.0 49.9 1 10 0.032 20 5.4 0.1 28 35 155 163 144 169 0.71 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF460-202 - 521 7.4e-11 42.0 49.9 2 10 5.6e-05 0.035 14.2 2.5 6 38 183 222 182 223 0.86 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF460-202 - 521 7.4e-11 42.0 49.9 3 10 0.00028 0.17 12.0 2.4 6 35 211 247 210 249 0.88 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF460-202 - 521 7.4e-11 42.0 49.9 4 10 0.00013 0.08 13.1 1.8 6 34 239 274 238 278 0.88 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF460-202 - 521 7.4e-11 42.0 49.9 5 10 0.0096 5.9 7.1 5.0 6 35 295 331 294 334 0.81 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF460-202 - 521 7.4e-11 42.0 49.9 6 10 0.00061 0.38 10.9 3.6 6 34 323 358 322 366 0.85 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF460-202 - 521 7.4e-11 42.0 49.9 7 10 0.017 11 6.3 0.7 6 18 351 363 348 371 0.86 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF460-202 - 521 7.4e-11 42.0 49.9 8 10 0.0002 0.13 12.4 1.4 6 35 379 415 378 420 0.78 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF460-202 - 521 7.4e-11 42.0 49.9 9 10 0.017 10 6.3 4.6 6 38 407 446 404 448 0.80 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF460-202 - 521 7.4e-11 42.0 49.9 10 10 0.0087 5.4 7.2 0.3 6 20 435 449 434 459 0.82 Zinc ribbon domain zf-C2H2_6 PF13912.6 27 ZNF460-202 - 521 2.2e-09 37.1 75.1 1 11 0.009 5.5 7.1 0.5 2 13 155 166 155 177 0.81 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF460-202 - 521 2.2e-09 37.1 75.1 2 11 0.031 19 5.4 2.2 2 24 183 205 183 207 0.91 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF460-202 - 521 2.2e-09 37.1 75.1 3 11 0.00011 0.067 13.2 1.2 2 24 211 233 211 236 0.89 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF460-202 - 521 2.2e-09 37.1 75.1 4 11 0.0015 0.96 9.5 1.1 2 24 239 261 239 264 0.84 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF460-202 - 521 2.2e-09 37.1 75.1 5 11 0.0072 4.4 7.4 0.4 2 20 267 285 267 289 0.83 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF460-202 - 521 2.2e-09 37.1 75.1 6 11 0.77 4.8e+02 0.9 4.8 2 12 295 305 295 316 0.73 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF460-202 - 521 2.2e-09 37.1 75.1 7 11 0.0086 5.3 7.2 1.3 2 12 323 333 323 336 0.88 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF460-202 - 521 2.2e-09 37.1 75.1 8 11 0.00038 0.24 11.5 0.1 2 17 351 366 351 369 0.78 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF460-202 - 521 2.2e-09 37.1 75.1 9 11 0.013 8.3 6.5 0.2 2 20 379 397 379 398 0.84 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF460-202 - 521 2.2e-09 37.1 75.1 10 11 0.075 47 4.1 0.8 2 20 407 425 407 429 0.89 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF460-202 - 521 2.2e-09 37.1 75.1 11 11 0.011 6.5 6.9 0.1 2 12 435 445 435 457 0.90 C2H2-type zinc finger XPA_N PF01286.18 32 ZNF460-202 - 521 9.7e-09 35.1 43.7 1 11 0.0048 3 8.0 0.1 3 15 156 168 154 173 0.87 XPA protein N-terminal XPA_N PF01286.18 32 ZNF460-202 - 521 9.7e-09 35.1 43.7 2 11 0.017 11 6.2 0.1 3 11 184 192 182 199 0.89 XPA protein N-terminal XPA_N PF01286.18 32 ZNF460-202 - 521 9.7e-09 35.1 43.7 3 11 0.12 75 3.5 0.1 3 12 212 221 211 228 0.89 XPA protein N-terminal XPA_N PF01286.18 32 ZNF460-202 - 521 9.7e-09 35.1 43.7 4 11 0.042 26 5.0 0.1 3 12 240 249 239 251 0.90 XPA protein N-terminal XPA_N PF01286.18 32 ZNF460-202 - 521 9.7e-09 35.1 43.7 5 11 0.023 14 5.8 0.2 4 14 269 279 267 287 0.81 XPA protein N-terminal XPA_N PF01286.18 32 ZNF460-202 - 521 9.7e-09 35.1 43.7 6 11 0.023 14 5.8 1.0 3 11 296 304 294 310 0.91 XPA protein N-terminal XPA_N PF01286.18 32 ZNF460-202 - 521 9.7e-09 35.1 43.7 7 11 0.22 1.4e+02 2.6 0.2 3 12 324 333 323 334 0.88 XPA protein N-terminal XPA_N PF01286.18 32 ZNF460-202 - 521 9.7e-09 35.1 43.7 8 11 0.015 9.1 6.4 0.2 3 12 352 361 350 371 0.89 XPA protein N-terminal XPA_N PF01286.18 32 ZNF460-202 - 521 9.7e-09 35.1 43.7 9 11 0.049 30 4.8 0.1 3 12 380 389 378 390 0.89 XPA protein N-terminal XPA_N PF01286.18 32 ZNF460-202 - 521 9.7e-09 35.1 43.7 10 11 0.028 17 5.5 0.1 3 13 408 418 406 428 0.76 XPA protein N-terminal XPA_N PF01286.18 32 ZNF460-202 - 521 9.7e-09 35.1 43.7 11 11 0.026 16 5.6 0.1 3 11 436 444 434 446 0.88 XPA protein N-terminal # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF460-202.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF460-202.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF460-202.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF460-202.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF460-202.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:06:55 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF460-203.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF460-203.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF460-203.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF460-203.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF460-203.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:06:55 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_5 PF13909.6 26 ZNF462-201 - 2506 2.9e-18 65.3 255.6 1 28 0.00013 0.58 10.0 0.0 2 25 5 28 4 29 0.95 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 ZNF462-201 - 2506 2.9e-18 65.3 255.6 2 28 1.9 8.5e+03 -3.4 0.2 13 24 120 131 119 132 0.84 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 ZNF462-201 - 2506 2.9e-18 65.3 255.6 3 28 0.053 2.4e+02 1.6 2.3 1 21 162 182 162 187 0.80 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 ZNF462-201 - 2506 2.9e-18 65.3 255.6 4 28 0.19 8.5e+02 -0.2 6.3 3 24 245 266 243 267 0.80 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 ZNF462-201 - 2506 2.9e-18 65.3 255.6 5 28 1.9e-08 8.4e-05 22.2 0.1 1 24 439 462 439 463 0.98 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 ZNF462-201 - 2506 2.9e-18 65.3 255.6 6 28 0.0015 6.9 6.5 4.5 1 26 470 494 470 494 0.87 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 ZNF462-201 - 2506 2.9e-18 65.3 255.6 7 28 0.00034 1.5 8.6 5.5 1 25 600 624 600 624 0.94 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 ZNF462-201 - 2506 2.9e-18 65.3 255.6 8 28 0.069 3.1e+02 1.3 5.0 1 24 843 866 843 867 0.86 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 ZNF462-201 - 2506 2.9e-18 65.3 255.6 9 28 0.00031 1.4 8.7 1.4 1 24 925 948 925 950 0.88 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 ZNF462-201 - 2506 2.9e-18 65.3 255.6 10 28 3.8 1.7e+04 -4.3 1.9 1 10 1030 1039 1030 1039 0.82 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 ZNF462-201 - 2506 2.9e-18 65.3 255.6 11 28 0.41 1.8e+03 -1.2 6.1 1 9 1114 1122 1114 1123 0.89 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 ZNF462-201 - 2506 2.9e-18 65.3 255.6 12 28 0.014 64 3.4 3.3 1 8 1193 1200 1193 1201 0.94 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 ZNF462-201 - 2506 2.9e-18 65.3 255.6 13 28 6.1e-06 0.027 14.2 2.1 2 24 1266 1288 1265 1289 0.92 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 ZNF462-201 - 2506 2.9e-18 65.3 255.6 14 28 0.26 1.2e+03 -0.6 1.6 1 21 1312 1332 1312 1335 0.77 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 ZNF462-201 - 2506 2.9e-18 65.3 255.6 15 28 0.0017 7.6 6.4 0.3 1 9 1515 1523 1515 1527 0.91 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 ZNF462-201 - 2506 2.9e-18 65.3 255.6 16 28 0.29 1.3e+03 -0.7 3.0 1 24 1577 1600 1577 1602 0.77 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 ZNF462-201 - 2506 2.9e-18 65.3 255.6 17 28 0.21 9.3e+02 -0.3 3.5 1 25 1660 1684 1660 1685 0.95 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 ZNF462-201 - 2506 2.9e-18 65.3 255.6 18 28 0.099 4.4e+02 0.8 1.0 2 14 1768 1780 1768 1790 0.85 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 ZNF462-201 - 2506 2.9e-18 65.3 255.6 19 28 0.0038 17 5.3 2.0 1 25 1892 1915 1892 1916 0.94 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 ZNF462-201 - 2506 2.9e-18 65.3 255.6 20 28 4 1.8e+04 -5.1 5.1 1 6 1968 1973 1968 1973 0.98 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 ZNF462-201 - 2506 2.9e-18 65.3 255.6 21 28 1.6e-08 7e-05 22.5 5.0 1 26 2025 2049 2025 2049 0.97 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 ZNF462-201 - 2506 2.9e-18 65.3 255.6 22 28 1.1e-06 0.0048 16.6 1.2 1 26 2054 2079 2054 2079 0.94 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 ZNF462-201 - 2506 2.9e-18 65.3 255.6 23 28 2.8e-13 1.3e-09 37.6 1.6 1 26 2083 2108 2083 2108 0.96 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 ZNF462-201 - 2506 2.9e-18 65.3 255.6 24 28 2.6e-06 0.012 15.4 0.2 3 26 2193 2216 2191 2216 0.96 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 ZNF462-201 - 2506 2.9e-18 65.3 255.6 25 28 0.00071 3.2 7.6 0.2 1 25 2220 2244 2220 2245 0.95 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 ZNF462-201 - 2506 2.9e-18 65.3 255.6 26 28 8.1e-05 0.36 10.6 0.4 2 26 2255 2278 2254 2278 0.91 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 ZNF462-201 - 2506 2.9e-18 65.3 255.6 27 28 0.00014 0.61 9.9 2.5 1 25 2300 2323 2300 2324 0.97 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 ZNF462-201 - 2506 2.9e-18 65.3 255.6 28 28 0.00042 1.9 8.3 4.6 1 24 2328 2351 2328 2352 0.94 C2H2-type zinc-finger domain zf_C2H2_ZHX PF18387.1 53 ZNF462-201 - 2506 2.3e-09 36.7 155.1 1 29 0.00022 0.97 9.1 0.0 7 30 6 29 3 41 0.89 Zinc-fingers and homeoboxes C2H2 finger domain zf_C2H2_ZHX PF18387.1 53 ZNF462-201 - 2506 2.3e-09 36.7 155.1 2 29 0.97 4.3e+03 -2.6 0.2 5 31 108 134 105 137 0.74 Zinc-fingers and homeoboxes C2H2 finger domain zf_C2H2_ZHX PF18387.1 53 ZNF462-201 - 2506 2.3e-09 36.7 155.1 3 29 0.0024 11 5.8 0.1 4 43 242 281 240 285 0.88 Zinc-fingers and homeoboxes C2H2 finger domain zf_C2H2_ZHX PF18387.1 53 ZNF462-201 - 2506 2.3e-09 36.7 155.1 4 29 0.06 2.7e+02 1.3 0.1 4 34 438 468 437 471 0.87 Zinc-fingers and homeoboxes C2H2 finger domain zf_C2H2_ZHX PF18387.1 53 ZNF462-201 - 2506 2.3e-09 36.7 155.1 5 29 0.011 49 3.7 2.1 4 33 469 497 466 508 0.89 Zinc-fingers and homeoboxes C2H2 finger domain zf_C2H2_ZHX PF18387.1 53 ZNF462-201 - 2506 2.3e-09 36.7 155.1 6 29 0.00026 1.2 8.8 1.5 5 29 600 624 598 634 0.92 Zinc-fingers and homeoboxes C2H2 finger domain zf_C2H2_ZHX PF18387.1 53 ZNF462-201 - 2506 2.3e-09 36.7 155.1 7 29 0.00038 1.7 8.4 0.3 5 29 843 867 841 877 0.89 Zinc-fingers and homeoboxes C2H2 finger domain zf_C2H2_ZHX PF18387.1 53 ZNF462-201 - 2506 2.3e-09 36.7 155.1 8 29 1.9e-06 0.0085 15.7 1.4 4 34 885 915 882 920 0.89 Zinc-fingers and homeoboxes C2H2 finger domain zf_C2H2_ZHX PF18387.1 53 ZNF462-201 - 2506 2.3e-09 36.7 155.1 9 29 0.0034 15 5.3 0.0 4 30 924 950 921 968 0.82 Zinc-fingers and homeoboxes C2H2 finger domain zf_C2H2_ZHX PF18387.1 53 ZNF462-201 - 2506 2.3e-09 36.7 155.1 10 29 0.00098 4.4 7.0 0.1 5 46 1030 1071 1028 1074 0.90 Zinc-fingers and homeoboxes C2H2 finger domain zf_C2H2_ZHX PF18387.1 53 ZNF462-201 - 2506 2.3e-09 36.7 155.1 11 29 0.00089 4 7.2 0.1 4 41 1113 1149 1111 1154 0.89 Zinc-fingers and homeoboxes C2H2 finger domain zf_C2H2_ZHX PF18387.1 53 ZNF462-201 - 2506 2.3e-09 36.7 155.1 12 29 0.046 2.1e+02 1.7 0.2 3 29 1191 1217 1189 1234 0.79 Zinc-fingers and homeoboxes C2H2 finger domain zf_C2H2_ZHX PF18387.1 53 ZNF462-201 - 2506 2.3e-09 36.7 155.1 13 29 0.0015 6.6 6.5 0.0 7 37 1267 1297 1264 1301 0.89 Zinc-fingers and homeoboxes C2H2 finger domain zf_C2H2_ZHX PF18387.1 53 ZNF462-201 - 2506 2.3e-09 36.7 155.1 14 29 0.0014 6.2 6.5 0.3 3 29 1310 1336 1308 1347 0.90 Zinc-fingers and homeoboxes C2H2 finger domain zf_C2H2_ZHX PF18387.1 53 ZNF462-201 - 2506 2.3e-09 36.7 155.1 15 29 0.00028 1.3 8.8 0.0 4 44 1368 1412 1366 1414 0.94 Zinc-fingers and homeoboxes C2H2 finger domain zf_C2H2_ZHX PF18387.1 53 ZNF462-201 - 2506 2.3e-09 36.7 155.1 16 29 0.00044 2 8.1 0.3 5 31 1470 1496 1466 1501 0.92 Zinc-fingers and homeoboxes C2H2 finger domain zf_C2H2_ZHX PF18387.1 53 ZNF462-201 - 2506 2.3e-09 36.7 155.1 17 29 0.028 1.3e+02 2.4 0.1 4 32 1514 1542 1511 1555 0.87 Zinc-fingers and homeoboxes C2H2 finger domain zf_C2H2_ZHX PF18387.1 53 ZNF462-201 - 2506 2.3e-09 36.7 155.1 18 29 0.15 6.7e+02 0.0 0.2 5 29 1577 1601 1575 1608 0.92 Zinc-fingers and homeoboxes C2H2 finger domain zf_C2H2_ZHX PF18387.1 53 ZNF462-201 - 2506 2.3e-09 36.7 155.1 19 29 1.2 5.6e+03 -2.9 1.1 3 24 1658 1679 1657 1685 0.84 Zinc-fingers and homeoboxes C2H2 finger domain zf_C2H2_ZHX PF18387.1 53 ZNF462-201 - 2506 2.3e-09 36.7 155.1 20 29 0.011 48 3.7 0.9 2 28 1694 1720 1693 1733 0.91 Zinc-fingers and homeoboxes C2H2 finger domain zf_C2H2_ZHX PF18387.1 53 ZNF462-201 - 2506 2.3e-09 36.7 155.1 21 29 0.033 1.5e+02 2.1 0.1 7 30 1769 1792 1768 1802 0.93 Zinc-fingers and homeoboxes C2H2 finger domain zf_C2H2_ZHX PF18387.1 53 ZNF462-201 - 2506 2.3e-09 36.7 155.1 22 29 1.5 6.8e+03 -3.2 1.1 5 28 1846 1870 1845 1873 0.73 Zinc-fingers and homeoboxes C2H2 finger domain zf_C2H2_ZHX PF18387.1 53 ZNF462-201 - 2506 2.3e-09 36.7 155.1 23 29 0.056 2.5e+02 1.4 0.2 2 23 1889 1910 1888 1930 0.81 Zinc-fingers and homeoboxes C2H2 finger domain zf_C2H2_ZHX PF18387.1 53 ZNF462-201 - 2506 2.3e-09 36.7 155.1 24 29 0.56 2.5e+03 -1.8 2.3 4 28 2024 2048 2021 2053 0.84 Zinc-fingers and homeoboxes C2H2 finger domain zf_C2H2_ZHX PF18387.1 53 ZNF462-201 - 2506 2.3e-09 36.7 155.1 25 29 0.0037 17 5.2 1.4 5 33 2054 2082 2050 2084 0.93 Zinc-fingers and homeoboxes C2H2 finger domain zf_C2H2_ZHX PF18387.1 53 ZNF462-201 - 2506 2.3e-09 36.7 155.1 26 29 0.00018 0.79 9.4 0.3 4 28 2082 2106 2080 2113 0.91 Zinc-fingers and homeoboxes C2H2 finger domain zf_C2H2_ZHX PF18387.1 53 ZNF462-201 - 2506 2.3e-09 36.7 155.1 27 29 0.44 2e+03 -1.5 0.9 7 35 2193 2221 2188 2244 0.66 Zinc-fingers and homeoboxes C2H2 finger domain zf_C2H2_ZHX PF18387.1 53 ZNF462-201 - 2506 2.3e-09 36.7 155.1 28 29 0.012 54 3.5 0.7 4 23 2299 2318 2297 2323 0.90 Zinc-fingers and homeoboxes C2H2 finger domain zf_C2H2_ZHX PF18387.1 53 ZNF462-201 - 2506 2.3e-09 36.7 155.1 29 29 0.007 31 4.3 0.1 5 35 2328 2358 2326 2362 0.89 Zinc-fingers and homeoboxes C2H2 finger domain # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF462-201.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF462-201.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF462-201.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF462-201.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF462-201.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:06:56 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_5 PF13909.6 26 ZNF462-202 - 1411 7.4e-16 57.6 178.3 1 20 0.014 35 4.3 3.3 1 8 38 45 38 46 0.94 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 ZNF462-202 - 1411 7.4e-16 57.6 178.3 2 20 5.8e-06 0.015 15.1 2.1 2 24 111 133 110 134 0.92 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 ZNF462-202 - 1411 7.4e-16 57.6 178.3 3 20 0.25 6.3e+02 0.3 1.6 1 21 157 177 157 180 0.77 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 ZNF462-202 - 1411 7.4e-16 57.6 178.3 4 20 0.0016 4.1 7.2 0.3 1 9 360 368 360 372 0.91 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 ZNF462-202 - 1411 7.4e-16 57.6 178.3 5 20 0.27 7e+02 0.1 3.0 1 24 422 445 422 447 0.78 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 ZNF462-202 - 1411 7.4e-16 57.6 178.3 6 20 0.19 5e+02 0.6 3.5 1 25 505 529 505 530 0.95 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 ZNF462-202 - 1411 7.4e-16 57.6 178.3 7 20 0.094 2.4e+02 1.6 1.0 2 14 613 625 613 635 0.85 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 ZNF462-202 - 1411 7.4e-16 57.6 178.3 8 20 0.0036 9.1 6.1 2.0 1 25 737 760 737 761 0.94 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 ZNF462-202 - 1411 7.4e-16 57.6 178.3 9 20 6.6 1.7e+04 -4.3 5.1 1 6 813 818 813 818 0.98 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 ZNF462-202 - 1411 7.4e-16 57.6 178.3 10 20 3.8 9.7e+03 -3.5 0.8 19 24 831 835 830 836 0.80 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 ZNF462-202 - 1411 7.4e-16 57.6 178.3 11 20 1 2.6e+03 -1.7 4.4 1 7 896 902 896 902 0.93 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 ZNF462-202 - 1411 7.4e-16 57.6 178.3 12 20 1.5e-08 3.8e-05 23.4 5.0 1 26 930 954 930 954 0.97 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 ZNF462-202 - 1411 7.4e-16 57.6 178.3 13 20 1e-06 0.0026 17.5 1.2 1 26 959 984 959 984 0.94 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 ZNF462-202 - 1411 7.4e-16 57.6 178.3 14 20 2.7e-13 6.9e-10 38.5 1.6 1 26 988 1013 988 1013 0.96 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 ZNF462-202 - 1411 7.4e-16 57.6 178.3 15 20 2.4e-06 0.0062 16.3 0.2 3 26 1098 1121 1096 1121 0.96 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 ZNF462-202 - 1411 7.4e-16 57.6 178.3 16 20 0.00067 1.7 8.5 0.2 1 25 1125 1149 1125 1150 0.95 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 ZNF462-202 - 1411 7.4e-16 57.6 178.3 17 20 7.6e-05 0.2 11.5 0.4 2 26 1160 1183 1159 1183 0.91 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 ZNF462-202 - 1411 7.4e-16 57.6 178.3 18 20 0.00013 0.33 10.7 2.5 1 25 1205 1228 1205 1229 0.97 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 ZNF462-202 - 1411 7.4e-16 57.6 178.3 19 20 0.0004 1 9.2 4.6 1 24 1233 1256 1233 1257 0.94 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 ZNF462-202 - 1411 7.4e-16 57.6 178.3 20 20 7 1.8e+04 -5.1 1.2 17 23 1335 1340 1335 1341 0.76 C2H2-type zinc-finger domain # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF462-202.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF462-202.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF462-202.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF462-202.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF462-202.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:06:56 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF462-203.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF462-203.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF462-203.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF462-203.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF462-203.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:06:57 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_5 PF13909.6 26 ZNF462-204 - 1411 7.4e-16 57.6 178.3 1 20 0.014 35 4.3 3.3 1 8 37 44 37 45 0.94 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 ZNF462-204 - 1411 7.4e-16 57.6 178.3 2 20 5.8e-06 0.015 15.1 2.1 2 24 110 132 109 133 0.92 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 ZNF462-204 - 1411 7.4e-16 57.6 178.3 3 20 0.25 6.3e+02 0.3 1.6 1 21 156 176 156 179 0.77 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 ZNF462-204 - 1411 7.4e-16 57.6 178.3 4 20 0.0016 4.1 7.2 0.3 1 9 359 367 359 371 0.91 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 ZNF462-204 - 1411 7.4e-16 57.6 178.3 5 20 0.27 7e+02 0.1 3.0 1 24 421 444 421 446 0.78 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 ZNF462-204 - 1411 7.4e-16 57.6 178.3 6 20 0.19 5e+02 0.6 3.5 1 25 504 528 504 529 0.95 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 ZNF462-204 - 1411 7.4e-16 57.6 178.3 7 20 0.094 2.4e+02 1.6 1.0 2 14 612 624 612 634 0.85 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 ZNF462-204 - 1411 7.4e-16 57.6 178.3 8 20 0.0036 9.1 6.1 2.0 1 25 736 759 736 760 0.94 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 ZNF462-204 - 1411 7.4e-16 57.6 178.3 9 20 6.6 1.7e+04 -4.3 5.1 1 6 812 817 812 817 0.98 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 ZNF462-204 - 1411 7.4e-16 57.6 178.3 10 20 3.8 9.7e+03 -3.5 0.8 19 24 830 834 829 835 0.80 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 ZNF462-204 - 1411 7.4e-16 57.6 178.3 11 20 1 2.6e+03 -1.7 4.4 1 7 896 902 896 902 0.93 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 ZNF462-204 - 1411 7.4e-16 57.6 178.3 12 20 1.5e-08 3.8e-05 23.4 5.0 1 26 930 954 930 954 0.97 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 ZNF462-204 - 1411 7.4e-16 57.6 178.3 13 20 1e-06 0.0026 17.5 1.2 1 26 959 984 959 984 0.94 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 ZNF462-204 - 1411 7.4e-16 57.6 178.3 14 20 2.7e-13 6.9e-10 38.5 1.6 1 26 988 1013 988 1013 0.96 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 ZNF462-204 - 1411 7.4e-16 57.6 178.3 15 20 2.4e-06 0.0062 16.3 0.2 3 26 1098 1121 1096 1121 0.96 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 ZNF462-204 - 1411 7.4e-16 57.6 178.3 16 20 0.00067 1.7 8.5 0.2 1 25 1125 1149 1125 1150 0.95 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 ZNF462-204 - 1411 7.4e-16 57.6 178.3 17 20 7.6e-05 0.2 11.5 0.4 2 26 1160 1183 1159 1183 0.91 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 ZNF462-204 - 1411 7.4e-16 57.6 178.3 18 20 0.00013 0.33 10.7 2.5 1 25 1205 1228 1205 1229 0.97 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 ZNF462-204 - 1411 7.4e-16 57.6 178.3 19 20 0.0004 1 9.2 4.6 1 24 1233 1256 1233 1257 0.94 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 ZNF462-204 - 1411 7.4e-16 57.6 178.3 20 20 7 1.8e+04 -5.1 1.2 17 23 1335 1340 1335 1341 0.76 C2H2-type zinc-finger domain # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF462-204.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF462-204.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF462-204.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF462-204.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF462-204.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:06:57 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF462-205.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF462-205.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF462-205.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF462-205.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF462-205.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:06:58 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF462-206.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF462-206.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF462-206.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF462-206.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF462-206.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:06:58 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF462-207.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF462-207.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF462-207.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF462-207.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF462-207.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:06:58 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF462-208.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF462-208.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF462-208.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF462-208.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF462-208.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:06:59 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF462-209.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF462-209.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF462-209.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF462-209.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF462-209.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:06:59 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_5 PF13909.6 26 ZNF462-210 - 125 1.7e-08 34.1 21.1 1 3 8.3e-06 0.0093 15.7 0.4 2 26 19 42 18 42 0.91 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 ZNF462-210 - 125 1.7e-08 34.1 21.1 2 3 1.4e-05 0.015 15.0 2.5 1 25 64 87 64 88 0.97 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 ZNF462-210 - 125 1.7e-08 34.1 21.1 3 3 4.3e-05 0.048 13.4 4.6 1 25 92 116 92 116 0.94 C2H2-type zinc-finger domain # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF462-210.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF462-210.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF462-210.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF462-210.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF462-210.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:06:59 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF462-211.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF462-211.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF462-211.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF462-211.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF462-211.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:07:00 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF462-212.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF462-212.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF462-212.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF462-212.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF462-212.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:07:00 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZNF467-201 - 595 5.1e-60 197.4 91.9 1 15 0.2 2e+02 2.7 0.3 11 24 156 169 155 170 0.90 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF467-201 - 595 5.1e-60 197.4 91.9 2 15 9.2e-07 0.00091 19.6 0.3 2 25 175 198 174 199 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF467-201 - 595 5.1e-60 197.4 91.9 3 15 5e-09 5e-06 26.7 1.5 5 25 206 226 202 227 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF467-201 - 595 5.1e-60 197.4 91.9 4 15 2e-11 2e-08 34.3 1.7 1 25 230 254 230 255 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF467-201 - 595 5.1e-60 197.4 91.9 5 15 6.6e-08 6.6e-05 23.2 3.7 4 25 261 282 258 283 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF467-201 - 595 5.1e-60 197.4 91.9 6 15 9.6e-11 9.6e-08 32.1 1.1 1 26 286 311 286 311 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF467-201 - 595 5.1e-60 197.4 91.9 7 15 0.068 68 4.2 0.1 1 10 314 323 314 332 0.85 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF467-201 - 595 5.1e-60 197.4 91.9 8 15 0.0039 3.9 8.1 0.5 10 24 350 364 346 365 0.89 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF467-201 - 595 5.1e-60 197.4 91.9 9 15 0.28 2.8e+02 2.2 0.2 1 21 369 390 369 393 0.83 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF467-201 - 595 5.1e-60 197.4 91.9 10 15 0.0075 7.5 7.2 0.2 11 26 427 442 426 442 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF467-201 - 595 5.1e-60 197.4 91.9 11 15 1.1e-08 1.1e-05 25.6 0.6 1 25 445 469 445 470 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF467-201 - 595 5.1e-60 197.4 91.9 12 15 9.9e-06 0.0099 16.3 0.0 1 25 473 497 473 498 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF467-201 - 595 5.1e-60 197.4 91.9 13 15 1.6e-07 0.00016 21.9 0.4 4 26 504 526 501 526 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF467-201 - 595 5.1e-60 197.4 91.9 14 15 5.3e-11 5.3e-08 33.0 0.1 1 25 529 553 529 554 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF467-201 - 595 5.1e-60 197.4 91.9 15 15 7.2 7.2e+03 -2.3 0.8 1 9 557 565 557 566 0.87 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZNF467-201 - 595 2e-51 169.7 101.6 1 12 1.7e-05 0.017 15.5 0.5 3 23 162 182 160 182 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF467-201 - 595 2e-51 169.7 101.6 2 12 6.4e-07 0.00063 20.0 3.3 3 23 190 210 188 210 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF467-201 - 595 2e-51 169.7 101.6 3 12 2e-08 2e-05 24.8 3.8 1 23 216 238 216 238 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF467-201 - 595 2e-51 169.7 101.6 4 12 2.6e-07 0.00026 21.3 1.3 1 23 244 266 244 266 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF467-201 - 595 2e-51 169.7 101.6 5 12 2.5e-07 0.00024 21.4 3.7 1 23 272 294 272 294 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF467-201 - 595 2e-51 169.7 101.6 6 12 8.8e-07 0.00087 19.6 4.5 1 23 300 322 300 322 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF467-201 - 595 2e-51 169.7 101.6 7 12 0.00017 0.16 12.4 0.7 1 23 355 377 355 377 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF467-201 - 595 2e-51 169.7 101.6 8 12 4.3e-05 0.042 14.3 1.8 1 23 431 453 431 453 0.91 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF467-201 - 595 2e-51 169.7 101.6 9 12 3.3e-05 0.033 14.7 0.2 1 23 459 481 459 481 0.95 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF467-201 - 595 2e-51 169.7 101.6 10 12 2.7e-07 0.00027 21.2 1.2 1 23 487 509 487 509 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF467-201 - 595 2e-51 169.7 101.6 11 12 2.3e-06 0.0023 18.3 0.5 2 23 516 537 515 537 0.94 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF467-201 - 595 2e-51 169.7 101.6 12 12 3.7e-09 3.7e-06 27.1 2.4 1 23 543 565 543 565 0.97 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZNF467-201 - 595 2.8e-32 108.6 93.6 1 12 0.00099 0.99 10.4 0.4 2 23 161 182 160 183 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF467-201 - 595 2.8e-32 108.6 93.6 2 12 0.00024 0.24 12.3 2.9 2 23 189 210 188 211 0.91 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF467-201 - 595 2.8e-32 108.6 93.6 3 12 1.8e-06 0.0018 18.9 2.8 1 23 216 238 216 239 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF467-201 - 595 2.8e-32 108.6 93.6 4 12 3.8e-05 0.038 14.8 1.1 1 23 244 266 244 267 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF467-201 - 595 2.8e-32 108.6 93.6 5 12 2.1e-05 0.021 15.6 2.5 1 23 272 294 272 295 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF467-201 - 595 2.8e-32 108.6 93.6 6 12 0.00044 0.44 11.5 3.8 1 23 300 322 300 323 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF467-201 - 595 2.8e-32 108.6 93.6 7 12 0.082 82 4.5 0.1 1 19 355 373 355 374 0.79 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF467-201 - 595 2.8e-32 108.6 93.6 8 12 0.0028 2.7 9.0 1.8 1 19 431 449 431 453 0.79 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF467-201 - 595 2.8e-32 108.6 93.6 9 12 1.4e-05 0.014 16.2 0.2 1 23 459 481 459 482 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF467-201 - 595 2.8e-32 108.6 93.6 10 12 6.9e-06 0.0069 17.1 1.2 1 23 487 509 487 510 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF467-201 - 595 2.8e-32 108.6 93.6 11 12 4.6e-05 0.046 14.6 0.6 1 23 515 537 515 538 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF467-201 - 595 2.8e-32 108.6 93.6 12 12 4.2e-07 0.00042 20.9 1.5 1 23 543 565 543 566 0.95 C2H2-type zinc finger zf-C2H2_jaz PF12171.8 27 ZNF467-201 - 595 1.1e-13 51.1 32.9 1 11 0.011 11 6.4 0.0 4 22 162 180 160 180 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF467-201 - 595 1.1e-13 51.1 32.9 2 11 0.4 4e+02 1.5 0.1 4 24 190 210 189 211 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF467-201 - 595 1.1e-13 51.1 32.9 3 11 4.3e-05 0.043 14.1 0.2 2 24 216 238 215 238 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF467-201 - 595 1.1e-13 51.1 32.9 4 11 0.1 1e+02 3.3 0.2 2 24 244 266 243 266 0.88 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF467-201 - 595 1.1e-13 51.1 32.9 5 11 0.0054 5.3 7.4 0.2 2 22 272 292 271 292 0.90 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF467-201 - 595 1.1e-13 51.1 32.9 6 11 0.087 87 3.6 0.9 4 22 302 320 299 320 0.90 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF467-201 - 595 1.1e-13 51.1 32.9 7 11 0.045 45 4.5 0.1 2 20 431 449 430 449 0.81 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF467-201 - 595 1.1e-13 51.1 32.9 8 11 0.033 33 4.9 0.0 2 20 459 477 458 477 0.81 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF467-201 - 595 1.1e-13 51.1 32.9 9 11 0.24 2.4e+02 2.2 0.0 2 21 487 506 486 507 0.89 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF467-201 - 595 1.1e-13 51.1 32.9 10 11 0.00054 0.54 10.6 0.0 2 21 515 534 514 535 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF467-201 - 595 1.1e-13 51.1 32.9 11 11 0.006 6 7.3 0.0 2 21 543 562 542 563 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_8 PF15909.5 98 ZNF467-201 - 595 1.8e-10 41.0 46.4 1 8 1.4 1.4e+03 -0.4 0.1 63 85 156 178 153 184 0.77 C2H2-type zinc ribbon zf-C2H2_8 PF15909.5 98 ZNF467-201 - 595 1.8e-10 41.0 46.4 2 8 0.0075 7.5 6.9 7.1 35 89 185 238 164 247 0.84 C2H2-type zinc ribbon zf-C2H2_8 PF15909.5 98 ZNF467-201 - 595 1.8e-10 41.0 46.4 3 8 0.00052 0.52 10.6 1.8 41 88 247 293 239 299 0.87 C2H2-type zinc ribbon zf-C2H2_8 PF15909.5 98 ZNF467-201 - 595 1.8e-10 41.0 46.4 4 8 0.048 47 4.4 0.3 40 61 302 323 294 329 0.80 C2H2-type zinc ribbon zf-C2H2_8 PF15909.5 98 ZNF467-201 - 595 1.8e-10 41.0 46.4 5 8 1.1e-05 0.011 16.0 0.2 11 74 329 391 324 397 0.90 C2H2-type zinc ribbon zf-C2H2_8 PF15909.5 98 ZNF467-201 - 595 1.8e-10 41.0 46.4 6 8 0.0041 4.1 7.8 0.2 35 84 430 476 419 477 0.81 C2H2-type zinc ribbon zf-C2H2_8 PF15909.5 98 ZNF467-201 - 595 1.8e-10 41.0 46.4 7 8 6.6e-05 0.066 13.5 1.2 33 88 456 508 437 516 0.79 C2H2-type zinc ribbon zf-C2H2_8 PF15909.5 98 ZNF467-201 - 595 1.8e-10 41.0 46.4 8 8 0.00022 0.22 11.9 4.2 24 95 501 571 498 574 0.79 C2H2-type zinc ribbon # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF467-201.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF467-201.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF467-201.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF467-201.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF467-201.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:07:00 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF467-202.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF467-202.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF467-202.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF467-202.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF467-202.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:07:01 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZNF468-201 - 469 2.7e-81 264.6 96.3 1 12 0.24 2.6e+02 2.3 0.2 8 18 155 165 152 173 0.80 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF468-201 - 469 2.7e-81 264.6 96.3 2 12 8.9e-06 0.0094 16.3 0.9 2 25 177 200 177 201 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF468-201 - 469 2.7e-81 264.6 96.3 3 12 1.9e-08 2e-05 24.8 7.3 5 26 208 229 205 229 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF468-201 - 469 2.7e-81 264.6 96.3 4 12 1.7e-10 1.8e-07 31.3 0.4 5 25 236 256 232 257 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF468-201 - 469 2.7e-81 264.6 96.3 5 12 3.9e-12 4.1e-09 36.5 2.2 1 25 260 284 260 285 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF468-201 - 469 2.7e-81 264.6 96.3 6 12 1.4e-10 1.5e-07 31.5 0.6 2 25 289 312 288 313 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF468-201 - 469 2.7e-81 264.6 96.3 7 12 4.3e-11 4.5e-08 33.2 2.3 2 25 317 340 316 341 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF468-201 - 469 2.7e-81 264.6 96.3 8 12 2.2e-10 2.3e-07 30.9 5.0 1 25 344 368 344 369 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF468-201 - 469 2.7e-81 264.6 96.3 9 12 3.6e-13 3.8e-10 39.7 1.1 1 24 372 395 372 397 0.97 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF468-201 - 469 2.7e-81 264.6 96.3 10 12 7.4e-12 7.8e-09 35.6 1.1 1 25 400 424 400 425 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF468-201 - 469 2.7e-81 264.6 96.3 11 12 9.4e-11 9.9e-08 32.1 0.4 5 25 432 452 428 453 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF468-201 - 469 2.7e-81 264.6 96.3 12 12 0.008 8.4 7.0 0.6 1 14 456 469 456 469 0.94 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZNF468-201 - 469 9.4e-53 173.8 100.8 1 11 0.049 52 4.6 0.3 8 23 169 184 168 184 0.91 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF468-201 - 469 9.4e-53 173.8 100.8 2 11 0.013 14 6.4 7.7 2 21 191 210 190 212 0.88 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF468-201 - 469 9.4e-53 173.8 100.8 3 11 3.9e-07 0.00041 20.7 1.5 1 23 218 240 218 240 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF468-201 - 469 9.4e-53 173.8 100.8 4 11 6.1e-10 6.4e-07 29.5 2.3 1 23 246 268 246 268 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF468-201 - 469 9.4e-53 173.8 100.8 5 11 6.8e-07 0.00072 19.9 0.3 1 23 274 296 274 296 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF468-201 - 469 9.4e-53 173.8 100.8 6 11 3.7e-09 3.9e-06 27.0 2.1 1 23 302 324 302 324 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF468-201 - 469 9.4e-53 173.8 100.8 7 11 2.8e-10 2.9e-07 30.6 3.2 1 23 330 352 330 352 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF468-201 - 469 9.4e-53 173.8 100.8 8 11 8.3e-08 8.7e-05 22.8 4.0 1 23 358 380 358 380 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF468-201 - 469 9.4e-53 173.8 100.8 9 11 6.1e-08 6.5e-05 23.2 1.9 1 23 386 408 386 408 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF468-201 - 469 9.4e-53 173.8 100.8 10 11 2.6e-08 2.7e-05 24.3 0.5 1 23 414 436 414 436 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF468-201 - 469 9.4e-53 173.8 100.8 11 11 8.6e-08 9e-05 22.7 3.3 1 23 442 464 442 464 0.99 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZNF468-201 - 469 6.4e-27 91.9 94.5 1 11 0.067 71 4.7 0.7 7 23 168 184 162 185 0.75 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF468-201 - 469 6.4e-27 91.9 94.5 2 11 0.041 43 5.3 7.4 2 21 191 210 190 212 0.82 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF468-201 - 469 6.4e-27 91.9 94.5 3 11 0.00049 0.52 11.3 1.2 1 23 218 240 218 241 0.91 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF468-201 - 469 6.4e-27 91.9 94.5 4 11 2.4e-06 0.0026 18.5 2.0 1 23 246 268 246 269 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF468-201 - 469 6.4e-27 91.9 94.5 5 11 0.00066 0.7 10.9 0.3 1 23 274 296 274 297 0.91 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF468-201 - 469 6.4e-27 91.9 94.5 6 11 1.7e-05 0.018 15.8 1.3 1 23 302 324 302 325 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF468-201 - 469 6.4e-27 91.9 94.5 7 11 1.4e-06 0.0015 19.2 2.7 1 23 330 352 330 353 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF468-201 - 469 6.4e-27 91.9 94.5 8 11 3.5e-06 0.0037 18.0 3.4 1 23 358 380 358 381 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF468-201 - 469 6.4e-27 91.9 94.5 9 11 8.9e-05 0.094 13.6 1.7 1 23 386 408 386 409 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF468-201 - 469 6.4e-27 91.9 94.5 10 11 4.8e-05 0.051 14.4 0.4 1 23 414 436 414 437 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF468-201 - 469 6.4e-27 91.9 94.5 11 11 2.8e-05 0.029 15.2 2.6 1 23 442 464 442 465 0.92 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF468-201 - 469 2.3e-16 59.4 81.8 1 11 0.0065 6.8 6.8 5.4 3 24 191 212 191 215 0.83 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF468-201 - 469 2.3e-16 59.4 81.8 2 11 0.00013 0.13 12.2 2.0 2 24 218 240 218 243 0.88 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF468-201 - 469 2.3e-16 59.4 81.8 3 11 0.00015 0.15 12.1 1.4 2 24 246 268 246 271 0.90 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF468-201 - 469 2.3e-16 59.4 81.8 4 11 0.0027 2.9 8.0 0.4 2 13 274 285 274 296 0.86 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF468-201 - 469 2.3e-16 59.4 81.8 5 11 0.00015 0.16 12.0 0.5 2 15 302 315 302 325 0.81 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF468-201 - 469 2.3e-16 59.4 81.8 6 11 0.00046 0.49 10.5 1.8 2 24 330 352 330 355 0.87 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF468-201 - 469 2.3e-16 59.4 81.8 7 11 0.0013 1.4 9.0 2.3 2 24 358 380 358 383 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF468-201 - 469 2.3e-16 59.4 81.8 8 11 0.00058 0.61 10.1 0.8 2 12 386 396 386 397 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF468-201 - 469 2.3e-16 59.4 81.8 9 11 2.9 3e+03 -1.6 0.1 20 26 400 406 398 407 0.84 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF468-201 - 469 2.3e-16 59.4 81.8 10 11 1.7e-05 0.018 15.0 0.4 2 24 414 436 414 439 0.92 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF468-201 - 469 2.3e-16 59.4 81.8 11 11 0.00024 0.25 11.4 1.3 2 14 442 454 442 466 0.80 C2H2-type zinc finger zf-met PF12874.7 25 ZNF468-201 - 469 5.7e-11 42.4 65.8 1 11 3.4 3.6e+03 -1.4 0.2 8 19 169 180 169 181 0.88 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF468-201 - 469 5.7e-11 42.4 65.8 2 11 0.013 14 6.2 0.6 3 19 192 208 191 210 0.87 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF468-201 - 469 5.7e-11 42.4 65.8 3 11 0.028 29 5.2 0.5 1 19 218 236 218 238 0.92 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF468-201 - 469 5.7e-11 42.4 65.8 4 11 1.2e-05 0.013 15.9 0.8 1 21 246 266 246 269 0.92 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF468-201 - 469 5.7e-11 42.4 65.8 5 11 0.024 25 5.4 0.7 1 19 274 292 274 293 0.89 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF468-201 - 469 5.7e-11 42.4 65.8 6 11 0.0069 7.3 7.1 0.1 1 19 302 320 302 320 0.95 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF468-201 - 469 5.7e-11 42.4 65.8 7 11 3.5e-05 0.037 14.4 0.6 1 19 330 348 330 352 0.92 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF468-201 - 469 5.7e-11 42.4 65.8 8 11 0.00042 0.45 11.0 1.9 1 20 358 377 358 381 0.91 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF468-201 - 469 5.7e-11 42.4 65.8 9 11 1.3e-05 0.013 15.8 1.1 1 21 386 406 386 409 0.93 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF468-201 - 469 5.7e-11 42.4 65.8 10 11 0.44 4.6e+02 1.4 0.1 1 17 414 430 414 434 0.75 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF468-201 - 469 5.7e-11 42.4 65.8 11 11 0.17 1.8e+02 2.7 0.6 1 16 442 457 442 460 0.81 Zinc-finger of C2H2 type zf-C2H2_jaz PF12171.8 27 ZNF468-201 - 469 6.6e-11 42.2 57.3 1 11 4 4.2e+03 -1.8 0.1 16 24 152 160 151 161 0.83 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF468-201 - 469 6.6e-11 42.2 57.3 2 11 1.2 1.3e+03 -0.1 2.6 3 12 191 200 189 204 0.90 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF468-201 - 469 6.6e-11 42.2 57.3 3 11 0.057 60 4.1 0.2 2 16 218 232 217 236 0.84 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF468-201 - 469 6.6e-11 42.2 57.3 4 11 8.6e-06 0.0091 16.3 0.4 2 22 246 266 245 266 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF468-201 - 469 6.6e-11 42.2 57.3 5 11 0.18 1.9e+02 2.5 0.7 2 11 274 283 273 292 0.82 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF468-201 - 469 6.6e-11 42.2 57.3 6 11 0.026 28 5.2 0.0 2 20 302 320 301 320 0.88 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF468-201 - 469 6.6e-11 42.2 57.3 7 11 1.4e-05 0.015 15.6 0.3 2 21 330 349 329 350 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF468-201 - 469 6.6e-11 42.2 57.3 8 11 0.0023 2.4 8.5 0.9 2 21 358 377 357 378 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF468-201 - 469 6.6e-11 42.2 57.3 9 11 1.8e-05 0.019 15.2 0.8 2 22 386 406 385 406 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF468-201 - 469 6.6e-11 42.2 57.3 10 11 0.11 1.2e+02 3.2 0.0 2 12 414 424 413 434 0.82 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF468-201 - 469 6.6e-11 42.2 57.3 11 11 0.0096 10 6.6 0.2 2 20 442 460 441 460 0.89 Zinc-finger double-stranded RNA-binding Zn-ribbon_8 PF09723.10 40 ZNF468-201 - 469 3.7e-07 30.2 62.1 1 9 0.68 7.2e+02 0.4 4.2 26 34 189 197 162 214 0.66 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF468-201 - 469 3.7e-07 30.2 62.1 2 9 0.0023 2.4 8.4 0.1 6 16 218 228 217 240 0.85 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF468-201 - 469 3.7e-07 30.2 62.1 3 9 0.0054 5.7 7.1 6.4 6 34 246 281 245 284 0.83 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF468-201 - 469 3.7e-07 30.2 62.1 4 9 0.00064 0.67 10.1 0.1 6 21 302 317 301 324 0.86 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF468-201 - 469 3.7e-07 30.2 62.1 5 9 0.039 42 4.4 10.3 6 32 330 363 329 370 0.84 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF468-201 - 469 3.7e-07 30.2 62.1 6 9 0.013 14 5.9 7.7 6 38 358 397 357 399 0.89 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF468-201 - 469 3.7e-07 30.2 62.1 7 9 0.00079 0.83 9.8 4.8 6 34 386 421 384 425 0.91 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF468-201 - 469 3.7e-07 30.2 62.1 8 9 0.0029 3.1 8.0 0.5 6 16 414 424 413 434 0.86 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF468-201 - 469 3.7e-07 30.2 62.1 9 9 0.00027 0.28 11.3 0.2 6 20 442 456 441 461 0.90 Zinc ribbon domain BolA PF01722.18 76 ZNF468-201 - 469 7.1e-07 29.4 20.9 1 8 0.18 1.9e+02 2.4 0.1 25 53 156 184 132 185 0.78 BolA-like protein BolA PF01722.18 76 ZNF468-201 - 469 7.1e-07 29.4 20.9 2 8 0.18 1.9e+02 2.4 0.0 25 51 184 210 172 213 0.78 BolA-like protein BolA PF01722.18 76 ZNF468-201 - 469 7.1e-07 29.4 20.9 3 8 0.027 29 5.0 0.3 24 53 239 268 221 270 0.81 BolA-like protein BolA PF01722.18 76 ZNF468-201 - 469 7.1e-07 29.4 20.9 4 8 0.002 2.2 8.6 0.1 15 51 258 294 253 298 0.85 BolA-like protein BolA PF01722.18 76 ZNF468-201 - 469 7.1e-07 29.4 20.9 5 8 0.00075 0.79 10.0 0.9 19 53 318 352 309 354 0.84 BolA-like protein BolA PF01722.18 76 ZNF468-201 - 469 7.1e-07 29.4 20.9 6 8 0.011 12 6.3 0.1 26 53 353 380 352 381 0.87 BolA-like protein BolA PF01722.18 76 ZNF468-201 - 469 7.1e-07 29.4 20.9 7 8 0.0002 0.21 11.9 0.5 20 53 375 408 370 410 0.83 BolA-like protein BolA PF01722.18 76 ZNF468-201 - 469 7.1e-07 29.4 20.9 8 8 4.5 4.8e+03 -2.1 0.1 25 50 436 462 425 464 0.70 BolA-like protein # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF468-201.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF468-201.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF468-201.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF468-201.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF468-201.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:07:01 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZNF468-202 - 509 7.4e-92 298.0 116.5 1 12 1.9e-11 1.5e-08 34.7 5.3 1 25 147 171 147 172 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF468-202 - 509 7.4e-92 298.0 116.5 2 12 6.2e-11 4.9e-08 33.1 2.9 1 26 175 200 175 200 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF468-202 - 509 7.4e-92 298.0 116.5 3 12 2.8e-08 2.2e-05 24.7 2.1 1 25 203 227 203 228 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF468-202 - 509 7.4e-92 298.0 116.5 4 12 6.7e-08 5.2e-05 23.5 6.8 5 25 235 255 234 256 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF468-202 - 509 7.4e-92 298.0 116.5 5 12 1.4e-10 1.1e-07 31.9 4.5 1 25 259 283 259 284 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF468-202 - 509 7.4e-92 298.0 116.5 6 12 4.2e-09 3.3e-06 27.3 0.6 3 26 289 312 288 312 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF468-202 - 509 7.4e-92 298.0 116.5 7 12 8.6e-11 6.7e-08 32.6 0.3 5 25 319 339 316 340 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF468-202 - 509 7.4e-92 298.0 116.5 8 12 1.4e-12 1.1e-09 38.2 2.8 1 25 343 367 343 368 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF468-202 - 509 7.4e-92 298.0 116.5 9 12 9.8e-11 7.6e-08 32.4 0.3 2 26 372 396 371 396 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF468-202 - 509 7.4e-92 298.0 116.5 10 12 2.4e-08 1.8e-05 24.9 0.9 5 24 403 422 400 424 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF468-202 - 509 7.4e-92 298.0 116.5 11 12 2.7e-11 2.1e-08 34.2 2.2 1 26 427 452 427 452 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF468-202 - 509 7.4e-92 298.0 116.5 12 12 2.4e-09 1.9e-06 28.1 2.3 1 25 455 479 455 479 0.95 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZNF468-202 - 509 1.2e-59 195.5 123.6 1 12 1.4e-05 0.011 16.2 2.7 1 23 161 183 161 183 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF468-202 - 509 1.2e-59 195.5 123.6 2 12 1.3e-07 9.9e-05 22.6 4.4 1 23 189 211 189 211 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF468-202 - 509 1.2e-59 195.5 123.6 3 12 2e-05 0.016 15.6 3.3 1 23 217 239 217 239 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF468-202 - 509 1.2e-59 195.5 123.6 4 12 8.8e-08 6.8e-05 23.1 5.6 1 23 245 267 245 267 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF468-202 - 509 1.2e-59 195.5 123.6 5 12 2.7e-07 0.00021 21.6 0.1 1 23 273 295 273 295 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF468-202 - 509 1.2e-59 195.5 123.6 6 12 4.7e-08 3.7e-05 23.9 0.3 1 23 301 323 301 323 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF468-202 - 509 1.2e-59 195.5 123.6 7 12 5e-10 3.9e-07 30.2 3.2 1 23 329 351 329 351 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF468-202 - 509 1.2e-59 195.5 123.6 8 12 4.8e-07 0.00037 20.8 0.6 1 23 357 379 357 379 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF468-202 - 509 1.2e-59 195.5 123.6 9 12 1.6e-06 0.0012 19.1 1.9 1 23 385 407 385 407 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF468-202 - 509 1.2e-59 195.5 123.6 10 12 5.1e-09 4e-06 27.0 1.6 1 23 413 435 413 435 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF468-202 - 509 1.2e-59 195.5 123.6 11 12 4.8e-10 3.7e-07 30.2 1.9 1 23 441 463 441 463 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF468-202 - 509 1.2e-59 195.5 123.6 12 12 4.3e-07 0.00034 20.9 0.4 1 21 469 489 469 490 0.96 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZNF468-202 - 509 9.5e-32 106.9 107.5 1 13 9.3 7.3e+03 -1.6 2.2 15 23 147 155 140 156 0.71 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF468-202 - 509 9.5e-32 106.9 107.5 2 13 3.9e-05 0.03 15.1 2.9 1 23 161 183 161 184 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF468-202 - 509 9.5e-32 106.9 107.5 3 13 0.0019 1.5 9.9 3.5 1 23 189 211 189 212 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF468-202 - 509 9.5e-32 106.9 107.5 4 13 0.00042 0.32 11.9 2.8 1 23 217 239 217 240 0.91 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF468-202 - 509 9.5e-32 106.9 107.5 5 13 0.00016 0.12 13.2 4.1 1 23 245 267 245 268 0.88 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF468-202 - 509 9.5e-32 106.9 107.5 6 13 0.00022 0.17 12.8 0.2 1 23 273 295 273 296 0.89 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF468-202 - 509 9.5e-32 106.9 107.5 7 13 2.3e-05 0.018 15.9 0.3 1 23 301 323 301 324 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF468-202 - 509 9.5e-32 106.9 107.5 8 13 3.8e-06 0.003 18.3 2.3 1 23 329 351 329 352 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF468-202 - 509 9.5e-32 106.9 107.5 9 13 4.9e-05 0.038 14.8 0.6 1 23 357 379 357 380 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF468-202 - 509 9.5e-32 106.9 107.5 10 13 4.9e-05 0.038 14.8 1.9 1 23 385 407 385 408 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF468-202 - 509 9.5e-32 106.9 107.5 11 13 4.4e-05 0.034 15.0 1.1 1 23 413 435 413 436 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF468-202 - 509 9.5e-32 106.9 107.5 12 13 7.1e-06 0.0055 17.4 1.3 1 23 441 463 441 464 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF468-202 - 509 9.5e-32 106.9 107.5 13 13 7.2e-05 0.056 14.3 0.4 1 21 469 489 469 491 0.79 C2H2-type zinc finger KRAB PF01352.27 42 ZNF468-202 - 509 8.5e-27 92.5 0.2 1 1 1.8e-29 1.4e-26 91.8 0.2 2 42 8 48 7 48 0.97 KRAB box zf-C2H2_jaz PF12171.8 27 ZNF468-202 - 509 1.4e-15 57.1 59.6 1 12 0.038 29 5.1 1.7 2 12 161 171 160 180 0.81 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF468-202 - 509 1.4e-15 57.1 59.6 2 12 5.1e-05 0.039 14.2 1.5 2 21 189 208 188 209 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF468-202 - 509 1.4e-15 57.1 59.6 3 12 1.1 8.6e+02 0.4 0.2 2 11 217 226 216 232 0.88 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF468-202 - 509 1.4e-15 57.1 59.6 4 12 0.12 96 3.4 0.4 2 12 245 255 244 263 0.85 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF468-202 - 509 1.4e-15 57.1 59.6 5 12 0.0032 2.5 8.5 0.0 2 21 273 292 272 293 0.91 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF468-202 - 509 1.4e-15 57.1 59.6 6 12 0.024 19 5.7 0.0 2 21 301 320 300 321 0.87 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF468-202 - 509 1.4e-15 57.1 59.6 7 12 2.6e-05 0.02 15.2 0.2 2 21 329 348 328 349 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF468-202 - 509 1.4e-15 57.1 59.6 8 12 2.4e-05 0.019 15.3 0.1 2 22 357 377 356 377 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF468-202 - 509 1.4e-15 57.1 59.6 9 12 0.16 1.2e+02 3.1 1.1 2 15 385 398 384 405 0.82 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF468-202 - 509 1.4e-15 57.1 59.6 10 12 0.00011 0.083 13.2 0.4 2 21 413 432 412 433 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF468-202 - 509 1.4e-15 57.1 59.6 11 12 0.012 9 6.7 0.0 2 22 441 461 440 461 0.91 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF468-202 - 509 1.4e-15 57.1 59.6 12 12 0.27 2.1e+02 2.3 0.4 2 21 469 488 468 489 0.78 Zinc-finger double-stranded RNA-binding zf-met PF12874.7 25 ZNF468-202 - 509 6.7e-15 54.9 73.4 1 12 0.0013 1 9.8 2.9 1 19 161 179 161 180 0.96 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF468-202 - 509 6.7e-15 54.9 73.4 2 12 1.4e-05 0.011 16.1 2.0 1 23 189 211 189 212 0.91 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF468-202 - 509 6.7e-15 54.9 73.4 3 12 0.66 5.2e+02 1.3 2.5 1 19 217 235 217 240 0.87 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF468-202 - 509 6.7e-15 54.9 73.4 4 12 0.51 4e+02 1.6 0.5 1 11 245 255 245 263 0.83 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF468-202 - 509 6.7e-15 54.9 73.4 5 12 0.019 15 6.1 0.3 1 19 273 291 273 295 0.91 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF468-202 - 509 6.7e-15 54.9 73.4 6 12 0.042 33 5.1 0.0 1 19 301 319 301 322 0.92 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF468-202 - 509 6.7e-15 54.9 73.4 7 12 3.8e-05 0.03 14.7 0.4 1 20 329 348 329 352 0.91 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF468-202 - 509 6.7e-15 54.9 73.4 8 12 0.00026 0.2 12.1 0.3 1 20 357 376 357 379 0.90 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF468-202 - 509 6.7e-15 54.9 73.4 9 12 0.0096 7.4 7.1 1.8 1 20 385 404 385 405 0.94 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF468-202 - 509 6.7e-15 54.9 73.4 10 12 0.00061 0.48 10.9 0.3 1 20 413 432 413 436 0.91 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF468-202 - 509 6.7e-15 54.9 73.4 11 12 0.0004 0.31 11.5 0.1 2 21 442 461 441 464 0.90 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF468-202 - 509 6.7e-15 54.9 73.4 12 12 0.081 63 4.2 0.3 8 23 461 476 460 477 0.88 Zinc-finger of C2H2 type zf-C2H2_6 PF13912.6 27 ZNF468-202 - 509 3e-12 46.2 101.2 1 13 4.8 3.7e+03 -1.9 0.9 20 26 147 153 147 154 0.88 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF468-202 - 509 3e-12 46.2 101.2 2 13 0.25 2e+02 2.2 5.4 2 12 161 171 161 172 0.95 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF468-202 - 509 3e-12 46.2 101.2 3 13 0.0026 2 8.5 2.1 2 13 189 200 189 213 0.74 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF468-202 - 509 3e-12 46.2 101.2 4 13 0.0015 1.1 9.3 0.9 1 11 216 226 216 227 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF468-202 - 509 3e-12 46.2 101.2 5 13 0.00071 0.56 10.3 1.2 2 12 245 255 245 256 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF468-202 - 509 3e-12 46.2 101.2 6 13 9.9e-05 0.077 13.0 0.2 2 24 273 295 273 298 0.82 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF468-202 - 509 3e-12 46.2 101.2 7 13 6.2e-05 0.048 13.7 0.5 2 24 301 323 301 326 0.87 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF468-202 - 509 3e-12 46.2 101.2 8 13 0.00061 0.47 10.5 1.0 2 24 329 351 329 354 0.86 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF468-202 - 509 3e-12 46.2 101.2 9 13 0.00017 0.13 12.3 0.4 2 13 357 368 357 380 0.85 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF468-202 - 509 3e-12 46.2 101.2 10 13 0.00071 0.55 10.3 1.2 2 13 385 396 385 397 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF468-202 - 509 3e-12 46.2 101.2 11 13 0.01 7.8 6.6 0.4 2 11 413 422 412 435 0.83 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF468-202 - 509 3e-12 46.2 101.2 12 13 0.062 49 4.1 0.5 2 13 441 452 441 464 0.80 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF468-202 - 509 3e-12 46.2 101.2 13 13 0.001 0.8 9.8 1.7 2 12 469 479 468 479 0.92 C2H2-type zinc finger Zn-ribbon_8 PF09723.10 40 ZNF468-202 - 509 2.1e-10 40.5 74.3 1 10 0.0058 4.5 7.5 6.7 6 34 161 196 160 201 0.90 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF468-202 - 509 2.1e-10 40.5 74.3 2 10 0.00046 0.36 11.0 7.0 6 35 217 253 216 256 0.79 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF468-202 - 509 2.1e-10 40.5 74.3 3 10 8.8e-05 0.069 13.3 5.0 6 38 245 284 243 285 0.81 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF468-202 - 509 2.1e-10 40.5 74.3 4 10 3e-05 0.024 14.8 4.1 6 34 273 308 272 313 0.88 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF468-202 - 509 2.1e-10 40.5 74.3 5 10 0.0011 0.89 9.7 0.4 6 19 301 314 299 320 0.86 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF468-202 - 509 2.1e-10 40.5 74.3 6 10 0.00054 0.42 10.8 4.9 6 35 329 365 328 369 0.86 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF468-202 - 509 2.1e-10 40.5 74.3 7 10 0.001 0.79 9.9 3.5 6 34 357 392 356 399 0.88 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF468-202 - 509 2.1e-10 40.5 74.3 8 10 0.014 11 6.2 6.4 6 34 385 420 384 426 0.79 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF468-202 - 509 2.1e-10 40.5 74.3 9 10 0.016 12 6.1 4.9 6 34 413 448 412 453 0.85 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF468-202 - 509 2.1e-10 40.5 74.3 10 10 0.00046 0.36 11.0 1.3 6 32 469 499 468 504 0.60 Zinc ribbon domain zf_UBZ PF18439.1 32 ZNF468-202 - 509 3.5e-07 29.7 64.9 1 13 0.035 28 4.4 1.9 3 15 161 173 159 177 0.81 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF468-202 - 509 3.5e-07 29.7 64.9 2 13 0.24 1.9e+02 1.8 0.3 3 16 189 203 187 208 0.79 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF468-202 - 509 3.5e-07 29.7 64.9 3 13 0.0028 2.1 8.0 1.4 2 20 216 235 215 236 0.82 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF468-202 - 509 3.5e-07 29.7 64.9 4 13 0.0038 3 7.5 0.2 3 15 245 257 243 263 0.86 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF468-202 - 509 3.5e-07 29.7 64.9 5 13 0.012 9.6 5.9 0.1 3 14 273 284 271 288 0.84 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF468-202 - 509 3.5e-07 29.7 64.9 6 13 0.017 13 5.5 0.1 3 14 301 312 299 319 0.85 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF468-202 - 509 3.5e-07 29.7 64.9 7 13 0.0082 6.4 6.5 0.3 3 15 329 341 327 347 0.81 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF468-202 - 509 3.5e-07 29.7 64.9 8 13 0.015 12 5.6 0.1 3 21 357 376 355 376 0.93 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF468-202 - 509 3.5e-07 29.7 64.9 9 13 0.0026 2 8.1 0.3 3 18 385 401 383 404 0.79 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF468-202 - 509 3.5e-07 29.7 64.9 10 13 0.047 37 4.0 0.2 3 11 413 421 411 429 0.84 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF468-202 - 509 3.5e-07 29.7 64.9 11 13 0.11 89 2.8 0.2 3 15 441 453 439 460 0.80 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF468-202 - 509 3.5e-07 29.7 64.9 12 13 0.00032 0.25 11.0 0.1 2 21 468 488 467 488 0.93 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF468-202 - 509 3.5e-07 29.7 64.9 13 13 7.2 5.6e+03 -3.0 0.2 5 11 496 502 495 507 0.75 Ubiquitin-Binding Zinc Finger # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF468-202.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF468-202.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF468-202.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF468-202.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF468-202.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:07:02 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF468-203.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF468-203.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF468-203.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF468-203.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF468-203.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:07:02 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZNF468-204 - 522 1.3e-80 262.5 96.3 1 12 0.28 2.9e+02 2.2 0.2 8 18 208 218 205 226 0.80 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF468-204 - 522 1.3e-80 262.5 96.3 2 12 1e-05 0.011 16.2 0.9 2 25 230 253 230 254 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF468-204 - 522 1.3e-80 262.5 96.3 3 12 2.2e-08 2.3e-05 24.6 7.3 5 26 261 282 258 282 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF468-204 - 522 1.3e-80 262.5 96.3 4 12 1.9e-10 2e-07 31.1 0.4 5 25 289 309 285 310 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF468-204 - 522 1.3e-80 262.5 96.3 5 12 4.4e-12 4.7e-09 36.3 2.2 1 25 313 337 313 338 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF468-204 - 522 1.3e-80 262.5 96.3 6 12 1.6e-10 1.7e-07 31.4 0.6 2 25 342 365 341 366 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF468-204 - 522 1.3e-80 262.5 96.3 7 12 4.9e-11 5.2e-08 33.0 2.3 2 25 370 393 369 394 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF468-204 - 522 1.3e-80 262.5 96.3 8 12 2.5e-10 2.6e-07 30.8 5.0 1 25 397 421 397 422 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF468-204 - 522 1.3e-80 262.5 96.3 9 12 4.1e-13 4.3e-10 39.6 1.1 1 24 425 448 425 450 0.97 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF468-204 - 522 1.3e-80 262.5 96.3 10 12 8.4e-12 8.8e-09 35.4 1.1 1 25 453 477 453 478 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF468-204 - 522 1.3e-80 262.5 96.3 11 12 1.1e-10 1.1e-07 31.9 0.4 5 25 485 505 481 506 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF468-204 - 522 1.3e-80 262.5 96.3 12 12 0.009 9.5 6.8 0.6 1 14 509 522 509 522 0.94 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZNF468-204 - 522 3.8e-52 171.9 100.8 1 11 0.056 59 4.4 0.3 8 23 222 237 221 237 0.91 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF468-204 - 522 3.8e-52 171.9 100.8 2 11 0.015 16 6.2 7.7 2 21 244 263 243 265 0.88 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF468-204 - 522 3.8e-52 171.9 100.8 3 11 4.4e-07 0.00046 20.5 1.5 1 23 271 293 271 293 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF468-204 - 522 3.8e-52 171.9 100.8 4 11 6.9e-10 7.3e-07 29.3 2.3 1 23 299 321 299 321 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF468-204 - 522 3.8e-52 171.9 100.8 5 11 7.7e-07 0.00081 19.7 0.3 1 23 327 349 327 349 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF468-204 - 522 3.8e-52 171.9 100.8 6 11 4.3e-09 4.5e-06 26.8 2.1 1 23 355 377 355 377 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF468-204 - 522 3.8e-52 171.9 100.8 7 11 3.2e-10 3.3e-07 30.4 3.2 1 23 383 405 383 405 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF468-204 - 522 3.8e-52 171.9 100.8 8 11 9.4e-08 9.9e-05 22.6 4.0 1 23 411 433 411 433 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF468-204 - 522 3.8e-52 171.9 100.8 9 11 7e-08 7.4e-05 23.0 1.9 1 23 439 461 439 461 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF468-204 - 522 3.8e-52 171.9 100.8 10 11 3e-08 3.1e-05 24.2 0.5 1 23 467 489 467 489 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF468-204 - 522 3.8e-52 171.9 100.8 11 11 9.7e-08 0.0001 22.5 3.3 1 23 495 517 495 517 0.99 Zinc finger, C2H2 type KRAB PF01352.27 42 ZNF468-204 - 522 8.5e-27 92.5 0.2 1 1 1.4e-29 1.5e-26 91.8 0.2 2 42 8 48 7 48 0.97 KRAB box zf-C2H2_4 PF13894.6 24 ZNF468-204 - 522 2.6e-26 90.0 94.5 1 11 0.076 80 4.5 0.7 7 23 221 237 215 238 0.75 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF468-204 - 522 2.6e-26 90.0 94.5 2 11 0.046 49 5.2 7.4 2 21 244 263 243 265 0.82 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF468-204 - 522 2.6e-26 90.0 94.5 3 11 0.00056 0.59 11.1 1.2 1 23 271 293 271 294 0.91 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF468-204 - 522 2.6e-26 90.0 94.5 4 11 2.8e-06 0.0029 18.3 2.0 1 23 299 321 299 322 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF468-204 - 522 2.6e-26 90.0 94.5 5 11 0.00076 0.8 10.7 0.3 1 23 327 349 327 350 0.91 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF468-204 - 522 2.6e-26 90.0 94.5 6 11 1.9e-05 0.02 15.7 1.3 1 23 355 377 355 378 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF468-204 - 522 2.6e-26 90.0 94.5 7 11 1.6e-06 0.0017 19.0 2.7 1 23 383 405 383 406 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF468-204 - 522 2.6e-26 90.0 94.5 8 11 3.9e-06 0.0042 17.8 3.4 1 23 411 433 411 434 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF468-204 - 522 2.6e-26 90.0 94.5 9 11 0.0001 0.11 13.4 1.7 1 23 439 461 439 462 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF468-204 - 522 2.6e-26 90.0 94.5 10 11 5.5e-05 0.058 14.3 0.4 1 23 467 489 467 490 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF468-204 - 522 2.6e-26 90.0 94.5 11 11 3.2e-05 0.034 15.0 2.6 1 23 495 517 495 518 0.92 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF468-204 - 522 9.2e-16 57.4 81.8 1 10 0.0078 8.3 6.5 5.5 3 24 244 265 244 268 0.83 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF468-204 - 522 9.2e-16 57.4 81.8 2 10 0.00014 0.15 12.1 2.0 2 24 271 293 271 296 0.88 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF468-204 - 522 9.2e-16 57.4 81.8 3 10 0.00017 0.18 11.9 1.4 2 24 299 321 299 324 0.90 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF468-204 - 522 9.2e-16 57.4 81.8 4 10 0.0031 3.2 7.8 0.4 2 13 327 338 327 349 0.86 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF468-204 - 522 9.2e-16 57.4 81.8 5 10 0.00017 0.18 11.9 0.5 2 15 355 368 355 378 0.81 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF468-204 - 522 9.2e-16 57.4 81.8 6 10 0.00052 0.55 10.3 1.8 2 24 383 405 383 408 0.87 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF468-204 - 522 9.2e-16 57.4 81.8 7 10 0.0015 1.6 8.8 2.3 2 24 411 433 411 436 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF468-204 - 522 9.2e-16 57.4 81.8 8 10 0.0027 2.9 8.0 3.0 2 12 439 449 439 460 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF468-204 - 522 9.2e-16 57.4 81.8 9 10 1.9e-05 0.02 14.9 0.4 2 24 467 489 467 492 0.92 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF468-204 - 522 9.2e-16 57.4 81.8 10 10 0.00027 0.28 11.2 1.3 2 14 495 507 495 519 0.80 C2H2-type zinc finger zf-met PF12874.7 25 ZNF468-204 - 522 2e-10 40.7 65.8 1 11 3.8 4e+03 -1.6 0.2 8 19 222 233 222 234 0.88 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF468-204 - 522 2e-10 40.7 65.8 2 11 0.015 16 6.0 0.6 3 19 245 261 244 263 0.87 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF468-204 - 522 2e-10 40.7 65.8 3 11 0.031 33 5.0 0.5 1 19 271 289 271 291 0.92 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF468-204 - 522 2e-10 40.7 65.8 4 11 1.3e-05 0.014 15.7 0.8 1 21 299 319 299 322 0.92 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF468-204 - 522 2e-10 40.7 65.8 5 11 0.027 28 5.3 0.7 1 19 327 345 327 346 0.89 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF468-204 - 522 2e-10 40.7 65.8 6 11 0.0078 8.2 7.0 0.1 1 19 355 373 355 373 0.95 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF468-204 - 522 2e-10 40.7 65.8 7 11 3.9e-05 0.042 14.3 0.6 1 19 383 401 383 405 0.92 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF468-204 - 522 2e-10 40.7 65.8 8 11 0.00048 0.51 10.8 1.9 1 20 411 430 411 434 0.91 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF468-204 - 522 2e-10 40.7 65.8 9 11 1.4e-05 0.015 15.7 1.1 1 21 439 459 439 462 0.93 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF468-204 - 522 2e-10 40.7 65.8 10 11 0.5 5.3e+02 1.2 0.1 1 17 467 483 467 487 0.75 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF468-204 - 522 2e-10 40.7 65.8 11 11 0.19 2e+02 2.5 0.6 1 16 495 510 495 513 0.81 Zinc-finger of C2H2 type zf-C2H2_jaz PF12171.8 27 ZNF468-204 - 522 2.4e-10 40.4 57.3 1 11 4.5 4.8e+03 -2.0 0.1 16 24 205 213 204 214 0.83 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF468-204 - 522 2.4e-10 40.4 57.3 2 11 1.4 1.4e+03 -0.3 2.6 3 12 244 253 242 257 0.90 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF468-204 - 522 2.4e-10 40.4 57.3 3 11 0.064 68 3.9 0.2 2 16 271 285 270 289 0.84 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF468-204 - 522 2.4e-10 40.4 57.3 4 11 9.8e-06 0.01 16.1 0.4 2 22 299 319 298 319 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF468-204 - 522 2.4e-10 40.4 57.3 5 11 0.2 2.1e+02 2.3 0.7 2 11 327 336 326 345 0.82 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF468-204 - 522 2.4e-10 40.4 57.3 6 11 0.03 32 5.0 0.0 2 20 355 373 354 373 0.88 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF468-204 - 522 2.4e-10 40.4 57.3 7 11 1.6e-05 0.017 15.4 0.3 2 21 383 402 382 403 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF468-204 - 522 2.4e-10 40.4 57.3 8 11 0.0026 2.8 8.4 0.9 2 21 411 430 410 431 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF468-204 - 522 2.4e-10 40.4 57.3 9 11 2.1e-05 0.022 15.0 0.8 2 22 439 459 438 459 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF468-204 - 522 2.4e-10 40.4 57.3 10 11 0.12 1.3e+02 3.0 0.0 2 12 467 477 466 487 0.82 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF468-204 - 522 2.4e-10 40.4 57.3 11 11 0.011 11 6.4 0.2 2 20 495 513 494 513 0.89 Zinc-finger double-stranded RNA-binding BolA PF01722.18 76 ZNF468-204 - 522 9.7e-07 29.0 20.1 1 8 0.21 2.2e+02 2.2 0.1 25 53 209 237 185 238 0.78 BolA-like protein BolA PF01722.18 76 ZNF468-204 - 522 9.7e-07 29.0 20.1 2 8 0.2 2.1e+02 2.3 0.0 25 51 237 263 225 266 0.78 BolA-like protein BolA PF01722.18 76 ZNF468-204 - 522 9.7e-07 29.0 20.1 3 8 0.031 33 4.8 0.3 24 53 292 321 274 323 0.81 BolA-like protein BolA PF01722.18 76 ZNF468-204 - 522 9.7e-07 29.0 20.1 4 8 0.0023 2.5 8.5 0.1 15 51 311 347 306 351 0.85 BolA-like protein BolA PF01722.18 76 ZNF468-204 - 522 9.7e-07 29.0 20.1 5 8 0.00083 0.88 9.9 0.9 19 53 371 405 361 407 0.84 BolA-like protein BolA PF01722.18 76 ZNF468-204 - 522 9.7e-07 29.0 20.1 6 8 0.011 12 6.3 0.1 26 53 406 433 404 434 0.87 BolA-like protein BolA PF01722.18 76 ZNF468-204 - 522 9.7e-07 29.0 20.1 7 8 0.00024 0.25 11.6 0.6 20 53 428 461 423 463 0.83 BolA-like protein BolA PF01722.18 76 ZNF468-204 - 522 9.7e-07 29.0 20.1 8 8 5.5 5.8e+03 -2.4 0.1 25 50 489 515 478 516 0.70 BolA-like protein Zn-ribbon_8 PF09723.10 40 ZNF468-204 - 522 1e-06 28.7 62.1 1 9 0.78 8.2e+02 0.2 4.2 26 34 242 250 215 267 0.66 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF468-204 - 522 1e-06 28.7 62.1 2 9 0.0026 2.7 8.2 0.1 6 16 271 281 270 293 0.85 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF468-204 - 522 1e-06 28.7 62.1 3 9 0.0058 6.1 7.0 6.3 6 34 299 334 298 337 0.83 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF468-204 - 522 1e-06 28.7 62.1 4 9 0.00072 0.76 9.9 0.1 6 21 355 370 354 377 0.86 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF468-204 - 522 1e-06 28.7 62.1 5 9 0.042 45 4.3 10.2 6 32 383 416 382 423 0.84 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF468-204 - 522 1e-06 28.7 62.1 6 9 0.015 16 5.7 7.7 6 38 411 450 409 452 0.89 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF468-204 - 522 1e-06 28.7 62.1 7 9 0.001 1.1 9.4 4.9 6 34 439 474 437 477 0.91 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF468-204 - 522 1e-06 28.7 62.1 8 9 0.0035 3.7 7.8 0.6 6 16 467 477 466 487 0.86 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF468-204 - 522 1e-06 28.7 62.1 9 9 0.0003 0.32 11.2 0.2 6 20 495 509 494 514 0.90 Zinc ribbon domain # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF468-204.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF468-204.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF468-204.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF468-204.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF468-204.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:07:02 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF468-205.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF468-205.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF468-205.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF468-205.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF468-205.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:07:03 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF468-206.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF468-206.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF468-206.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF468-206.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF468-206.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:07:03 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF468-207.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF468-207.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF468-207.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF468-207.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF468-207.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:07:04 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF468-208.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF468-208.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF468-208.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF468-208.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF468-208.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:07:04 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZNF473-201 - 871 1.8e-103 334.8 169.1 1 23 8e-07 0.0011 19.3 0.1 9 25 203 219 192 219 0.81 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF473-201 - 871 1.8e-103 334.8 169.1 2 23 0.19 2.7e+02 2.3 0.4 2 18 224 243 223 245 0.80 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF473-201 - 871 1.8e-103 334.8 169.1 3 23 0.057 78 4.0 0.5 7 25 257 275 257 276 0.85 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF473-201 - 871 1.8e-103 334.8 169.1 4 23 0.0038 5.2 7.7 0.2 4 14 281 291 279 294 0.89 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF473-201 - 871 1.8e-103 334.8 169.1 5 23 2.8e-06 0.0038 17.6 1.7 5 26 310 331 309 331 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF473-201 - 871 1.8e-103 334.8 169.1 6 23 1e-06 0.0014 18.9 2.4 1 25 334 357 334 358 0.90 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF473-201 - 871 1.8e-103 334.8 169.1 7 23 0.0053 7.3 7.2 1.5 1 26 361 386 357 386 0.66 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF473-201 - 871 1.8e-103 334.8 169.1 8 23 0.00022 0.31 11.6 0.1 4 26 392 414 390 414 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF473-201 - 871 1.8e-103 334.8 169.1 9 23 4.8e-10 6.6e-07 29.5 1.9 2 24 418 440 417 442 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF473-201 - 871 1.8e-103 334.8 169.1 10 23 2e-06 0.0028 18.0 3.5 1 25 445 469 445 470 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF473-201 - 871 1.8e-103 334.8 169.1 11 23 1.9e-08 2.7e-05 24.4 0.6 1 25 473 497 473 498 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF473-201 - 871 1.8e-103 334.8 169.1 12 23 1e-08 1.4e-05 25.3 1.3 2 24 502 524 501 526 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF473-201 - 871 1.8e-103 334.8 169.1 13 23 0.012 16 6.1 2.2 14 25 559 572 533 573 0.83 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF473-201 - 871 1.8e-103 334.8 169.1 14 23 1.1e-09 1.6e-06 28.3 0.1 2 25 577 601 576 602 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF473-201 - 871 1.8e-103 334.8 169.1 15 23 2.6e-05 0.036 14.5 5.8 8 26 639 657 637 657 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF473-201 - 871 1.8e-103 334.8 169.1 16 23 7e-09 9.7e-06 25.8 0.8 1 25 660 684 660 685 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF473-201 - 871 1.8e-103 334.8 169.1 17 23 5.3e-07 0.00073 19.9 0.8 2 25 689 712 688 713 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF473-201 - 871 1.8e-103 334.8 169.1 18 23 6.2e-11 8.6e-08 32.3 0.2 2 24 717 739 717 740 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF473-201 - 871 1.8e-103 334.8 169.1 19 23 2.7e-12 3.7e-09 36.6 0.1 2 25 745 768 744 769 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF473-201 - 871 1.8e-103 334.8 169.1 20 23 2.3e-10 3.2e-07 30.5 0.1 2 25 773 796 773 797 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF473-201 - 871 1.8e-103 334.8 169.1 21 23 2.8e-11 3.9e-08 33.4 0.1 1 25 800 824 800 824 0.97 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF473-201 - 871 1.8e-103 334.8 169.1 22 23 2.6e-08 3.6e-05 24.0 2.8 1 25 828 852 828 853 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF473-201 - 871 1.8e-103 334.8 169.1 23 23 0.02 27 5.4 0.2 1 12 856 867 856 870 0.85 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZNF473-201 - 871 7.3e-76 246.6 175.6 1 21 3.5e-07 0.00048 20.4 0.6 1 23 209 231 209 231 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF473-201 - 871 7.3e-76 246.6 175.6 2 21 6.6 9e+03 -2.5 0.0 5 16 241 252 240 254 0.85 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF473-201 - 871 7.3e-76 246.6 175.6 3 21 0.1 1.4e+02 3.2 0.2 7 23 271 286 265 286 0.81 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF473-201 - 871 7.3e-76 246.6 175.6 4 21 4.1e-08 5.6e-05 23.4 2.2 1 23 320 342 320 342 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF473-201 - 871 7.3e-76 246.6 175.6 5 21 4.8e-05 0.066 13.7 3.1 1 23 347 369 347 369 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF473-201 - 871 7.3e-76 246.6 175.6 6 21 1e-06 0.0014 19.0 0.4 2 23 376 397 375 397 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF473-201 - 871 7.3e-76 246.6 175.6 7 21 6.5e-05 0.089 13.3 1.5 2 23 404 425 403 425 0.85 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF473-201 - 871 7.3e-76 246.6 175.6 8 21 4.6e-06 0.0064 16.9 6.7 1 23 431 453 431 453 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF473-201 - 871 7.3e-76 246.6 175.6 9 21 1.2e-07 0.00016 21.9 3.6 1 23 459 481 459 481 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF473-201 - 871 7.3e-76 246.6 175.6 10 21 1.1e-05 0.015 15.7 0.7 1 23 487 509 487 509 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF473-201 - 871 7.3e-76 246.6 175.6 11 21 0.25 3.5e+02 2.0 2.6 1 11 515 525 515 537 0.82 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF473-201 - 871 7.3e-76 246.6 175.6 12 21 0.00047 0.64 10.6 5.2 1 23 562 584 562 584 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF473-201 - 871 7.3e-76 246.6 175.6 13 21 2e-06 0.0028 18.0 0.7 1 23 591 613 591 613 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF473-201 - 871 7.3e-76 246.6 175.6 14 21 5.6e-08 7.7e-05 22.9 3.9 1 23 646 668 646 668 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF473-201 - 871 7.3e-76 246.6 175.6 15 21 2.9e-07 0.0004 20.7 2.2 1 23 674 696 674 696 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF473-201 - 871 7.3e-76 246.6 175.6 16 21 4.7e-08 6.5e-05 23.2 2.6 2 23 703 724 702 724 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF473-201 - 871 7.3e-76 246.6 175.6 17 21 1.4e-07 0.00019 21.7 0.1 1 23 730 752 730 752 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF473-201 - 871 7.3e-76 246.6 175.6 18 21 8.3e-08 0.00011 22.4 1.5 1 23 758 780 758 780 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF473-201 - 871 7.3e-76 246.6 175.6 19 21 2.8e-09 3.8e-06 27.0 0.1 1 23 786 808 786 808 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF473-201 - 871 7.3e-76 246.6 175.6 20 21 3e-07 0.00042 20.6 0.5 1 23 814 836 814 836 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF473-201 - 871 7.3e-76 246.6 175.6 21 21 0.0005 0.68 10.5 7.0 1 23 842 864 842 864 0.99 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZNF473-201 - 871 8.7e-44 144.4 163.7 1 20 3.4e-07 0.00047 20.8 0.7 1 23 209 231 209 232 0.97 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF473-201 - 871 8.7e-44 144.4 163.7 2 20 8.7 1.2e+04 -2.3 0.1 7 23 271 286 266 287 0.63 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF473-201 - 871 8.7e-44 144.4 163.7 3 20 6.2e-05 0.086 13.7 1.3 1 23 320 342 320 343 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF473-201 - 871 8.7e-44 144.4 163.7 4 20 3.8e-05 0.052 14.4 1.8 1 23 347 369 347 370 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF473-201 - 871 8.7e-44 144.4 163.7 5 20 0.0056 7.8 7.6 0.4 2 23 376 397 375 398 0.83 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF473-201 - 871 8.7e-44 144.4 163.7 6 20 0.67 9.3e+02 1.2 0.8 7 23 409 425 403 426 0.79 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF473-201 - 871 8.7e-44 144.4 163.7 7 20 0.00036 0.5 11.3 4.9 1 23 431 453 431 454 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF473-201 - 871 8.7e-44 144.4 163.7 8 20 0.00015 0.2 12.6 3.0 1 23 459 481 459 482 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF473-201 - 871 8.7e-44 144.4 163.7 9 20 3.9e-05 0.054 14.4 0.6 1 23 487 509 487 510 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF473-201 - 871 8.7e-44 144.4 163.7 10 20 0.0017 2.4 9.3 2.2 1 23 515 537 515 538 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF473-201 - 871 8.7e-44 144.4 163.7 11 20 5.8e-05 0.08 13.8 4.4 1 23 562 584 562 585 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF473-201 - 871 8.7e-44 144.4 163.7 12 20 1.9e-05 0.026 15.4 0.6 1 23 591 613 591 614 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF473-201 - 871 8.7e-44 144.4 163.7 13 20 3.8e-05 0.052 14.4 2.7 1 23 646 668 646 669 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF473-201 - 871 8.7e-44 144.4 163.7 14 20 1.1e-05 0.015 16.1 1.2 1 23 674 696 674 697 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF473-201 - 871 8.7e-44 144.4 163.7 15 20 7.6e-05 0.1 13.5 2.5 2 23 703 724 702 725 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF473-201 - 871 8.7e-44 144.4 163.7 16 20 5e-05 0.07 14.0 0.1 1 23 730 752 730 753 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF473-201 - 871 8.7e-44 144.4 163.7 17 20 0.00025 0.34 11.9 1.7 1 23 758 780 758 781 0.91 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF473-201 - 871 8.7e-44 144.4 163.7 18 20 6.4e-05 0.088 13.7 0.1 1 23 786 808 786 809 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF473-201 - 871 8.7e-44 144.4 163.7 19 20 6.3e-05 0.087 13.7 0.7 1 23 814 836 814 837 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF473-201 - 871 8.7e-44 144.4 163.7 20 20 0.00021 0.29 12.1 5.9 1 23 842 864 842 865 0.96 C2H2-type zinc finger Zn-ribbon_8 PF09723.10 40 ZNF473-201 - 871 2.3e-09 37.2 105.7 1 15 0.0026 3.6 7.8 0.5 6 34 209 244 208 249 0.70 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF473-201 - 871 2.3e-09 37.2 105.7 2 15 3.9 5.4e+03 -2.4 0.1 6 17 265 280 265 294 0.65 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF473-201 - 871 2.3e-09 37.2 105.7 3 15 0.0029 3.9 7.7 0.2 6 19 320 333 319 345 0.79 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF473-201 - 871 2.3e-09 37.2 105.7 4 15 6.9e-05 0.095 12.8 2.8 6 34 347 382 344 386 0.87 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF473-201 - 871 2.3e-09 37.2 105.7 5 15 0.00084 1.2 9.4 1.3 6 38 403 442 402 444 0.85 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF473-201 - 871 2.3e-09 37.2 105.7 6 15 0.0046 6.4 7.0 3.9 6 32 431 464 429 471 0.78 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF473-201 - 871 2.3e-09 37.2 105.7 7 15 0.031 42 4.4 4.0 7 34 460 494 455 499 0.88 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF473-201 - 871 2.3e-09 37.2 105.7 8 15 0.017 23 5.2 1.5 6 15 515 524 514 525 0.94 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF473-201 - 871 2.3e-09 37.2 105.7 9 15 0.52 7.1e+02 0.4 7.7 6 34 562 598 561 607 0.80 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF473-201 - 871 2.3e-09 37.2 105.7 10 15 0.0027 3.8 7.7 0.1 6 20 646 660 644 672 0.81 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF473-201 - 871 2.3e-09 37.2 105.7 11 15 0.0002 0.28 11.3 2.1 6 37 674 712 673 715 0.77 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF473-201 - 871 2.3e-09 37.2 105.7 12 15 0.00044 0.6 10.3 1.2 7 34 703 737 702 742 0.91 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF473-201 - 871 2.3e-09 37.2 105.7 13 15 0.00014 0.2 11.8 1.0 6 36 730 767 729 771 0.89 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF473-201 - 871 2.3e-09 37.2 105.7 14 15 3.2e-05 0.044 13.9 1.4 6 34 786 821 785 824 0.93 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF473-201 - 871 2.3e-09 37.2 105.7 15 15 0.15 2.1e+02 2.1 2.7 6 16 842 852 841 870 0.73 Zinc ribbon domain zf-C2H2_6 PF13912.6 27 ZNF473-201 - 871 1.8e-08 34.2 147.7 1 20 0.00017 0.24 11.5 0.9 2 24 209 231 209 234 0.79 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF473-201 - 871 1.8e-08 34.2 147.7 2 20 6.7 9.3e+03 -3.2 0.2 18 24 308 314 308 316 0.86 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF473-201 - 871 1.8e-08 34.2 147.7 3 20 0.00052 0.71 9.9 1.4 2 24 320 342 319 345 0.82 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF473-201 - 871 1.8e-08 34.2 147.7 4 20 0.00043 0.59 10.2 2.6 1 24 346 369 346 372 0.76 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF473-201 - 871 1.8e-08 34.2 147.7 5 20 0.025 34 4.6 0.1 3 12 376 385 376 395 0.90 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF473-201 - 871 1.8e-08 34.2 147.7 6 20 4.6 6.4e+03 -2.7 0.1 2 12 403 413 403 413 0.84 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF473-201 - 871 1.8e-08 34.2 147.7 7 20 3.4e-05 0.047 13.7 5.2 2 24 431 453 431 454 0.95 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF473-201 - 871 1.8e-08 34.2 147.7 8 20 0.0054 7.5 6.7 0.5 2 13 459 470 459 483 0.82 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF473-201 - 871 1.8e-08 34.2 147.7 9 20 0.046 64 3.7 0.3 2 12 487 497 487 507 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF473-201 - 871 1.8e-08 34.2 147.7 10 20 0.0034 4.7 7.3 0.7 2 11 515 524 515 524 0.97 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF473-201 - 871 1.8e-08 34.2 147.7 11 20 0.37 5.1e+02 0.8 5.9 2 12 562 572 561 584 0.86 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF473-201 - 871 1.8e-08 34.2 147.7 12 20 0.00045 0.62 10.1 0.5 2 22 591 611 591 616 0.77 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF473-201 - 871 1.8e-08 34.2 147.7 13 20 0.002 2.8 8.0 2.2 2 12 646 656 646 657 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF473-201 - 871 1.8e-08 34.2 147.7 14 20 0.0092 13 6.0 0.8 2 12 674 684 674 699 0.76 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF473-201 - 871 1.8e-08 34.2 147.7 15 20 0.013 19 5.4 1.7 4 12 704 712 703 720 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF473-201 - 871 1.8e-08 34.2 147.7 16 20 0.0017 2.4 8.3 0.1 2 11 730 739 730 741 0.92 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF473-201 - 871 1.8e-08 34.2 147.7 17 20 0.003 4.1 7.5 0.4 2 11 758 767 758 769 0.92 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF473-201 - 871 1.8e-08 34.2 147.7 18 20 0.015 21 5.3 0.3 2 20 786 804 786 810 0.79 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF473-201 - 871 1.8e-08 34.2 147.7 19 20 0.01 14 5.8 0.5 2 13 814 825 814 839 0.71 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF473-201 - 871 1.8e-08 34.2 147.7 20 20 1.5 2e+03 -1.1 3.3 2 12 842 852 841 867 0.78 C2H2-type zinc finger KRAB PF01352.27 42 ZNF473-201 - 871 2.1e-08 33.7 0.2 1 1 3.1e-11 4.3e-08 32.7 0.2 2 42 6 46 5 46 0.98 KRAB box XPA_N PF01286.18 32 ZNF473-201 - 871 5.3e-08 32.8 91.7 1 18 0.0011 1.5 8.9 0.2 3 15 210 222 208 227 0.89 XPA protein N-terminal XPA_N PF01286.18 32 ZNF473-201 - 871 5.3e-08 32.8 91.7 2 18 0.013 18 5.5 0.1 3 12 321 330 320 336 0.90 XPA protein N-terminal XPA_N PF01286.18 32 ZNF473-201 - 871 5.3e-08 32.8 91.7 3 18 0.61 8.5e+02 0.1 0.2 3 11 348 356 346 358 0.86 XPA protein N-terminal XPA_N PF01286.18 32 ZNF473-201 - 871 5.3e-08 32.8 91.7 4 18 0.00026 0.36 10.9 0.1 3 17 376 390 374 393 0.89 XPA protein N-terminal XPA_N PF01286.18 32 ZNF473-201 - 871 5.3e-08 32.8 91.7 5 18 0.012 16 5.6 0.1 3 12 432 441 430 443 0.90 XPA protein N-terminal XPA_N PF01286.18 32 ZNF473-201 - 871 5.3e-08 32.8 91.7 6 18 0.15 2.1e+02 2.1 0.1 3 12 460 469 458 477 0.81 XPA protein N-terminal XPA_N PF01286.18 32 ZNF473-201 - 871 5.3e-08 32.8 91.7 7 18 0.11 1.5e+02 2.5 0.3 4 13 489 498 486 499 0.89 XPA protein N-terminal XPA_N PF01286.18 32 ZNF473-201 - 871 5.3e-08 32.8 91.7 8 18 0.098 1.4e+02 2.7 1.4 3 11 516 524 514 527 0.90 XPA protein N-terminal XPA_N PF01286.18 32 ZNF473-201 - 871 5.3e-08 32.8 91.7 9 18 0.051 70 3.6 5.5 3 18 563 578 561 581 0.91 XPA protein N-terminal XPA_N PF01286.18 32 ZNF473-201 - 871 5.3e-08 32.8 91.7 10 18 0.0028 3.9 7.6 0.2 3 14 592 603 590 605 0.93 XPA protein N-terminal XPA_N PF01286.18 32 ZNF473-201 - 871 5.3e-08 32.8 91.7 11 18 0.0025 3.5 7.8 0.2 3 14 647 658 645 664 0.87 XPA protein N-terminal XPA_N PF01286.18 32 ZNF473-201 - 871 5.3e-08 32.8 91.7 12 18 0.71 9.8e+02 -0.1 0.1 3 12 675 684 673 690 0.80 XPA protein N-terminal XPA_N PF01286.18 32 ZNF473-201 - 871 5.3e-08 32.8 91.7 13 18 0.0029 4 7.6 0.7 3 14 703 714 701 720 0.85 XPA protein N-terminal XPA_N PF01286.18 32 ZNF473-201 - 871 5.3e-08 32.8 91.7 14 18 0.047 65 3.7 0.0 3 14 731 742 729 743 0.86 XPA protein N-terminal XPA_N PF01286.18 32 ZNF473-201 - 871 5.3e-08 32.8 91.7 15 18 0.0017 2.3 8.3 0.8 3 14 759 770 757 774 0.91 XPA protein N-terminal XPA_N PF01286.18 32 ZNF473-201 - 871 5.3e-08 32.8 91.7 16 18 0.034 47 4.1 0.1 3 12 787 796 785 798 0.88 XPA protein N-terminal XPA_N PF01286.18 32 ZNF473-201 - 871 5.3e-08 32.8 91.7 17 18 0.36 5e+02 0.9 0.0 4 14 816 826 813 831 0.80 XPA protein N-terminal XPA_N PF01286.18 32 ZNF473-201 - 871 5.3e-08 32.8 91.7 18 18 0.23 3.2e+02 1.5 0.6 3 11 843 851 842 860 0.84 XPA protein N-terminal # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF473-201.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF473-201.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF473-201.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF473-201.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF473-201.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:07:04 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZNF473-202 - 871 1.8e-103 334.8 169.1 1 23 8e-07 0.0011 19.3 0.1 9 25 203 219 192 219 0.81 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF473-202 - 871 1.8e-103 334.8 169.1 2 23 0.19 2.7e+02 2.3 0.4 2 18 224 243 223 245 0.80 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF473-202 - 871 1.8e-103 334.8 169.1 3 23 0.057 78 4.0 0.5 7 25 257 275 257 276 0.85 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF473-202 - 871 1.8e-103 334.8 169.1 4 23 0.0038 5.2 7.7 0.2 4 14 281 291 279 294 0.89 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF473-202 - 871 1.8e-103 334.8 169.1 5 23 2.8e-06 0.0038 17.6 1.7 5 26 310 331 309 331 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF473-202 - 871 1.8e-103 334.8 169.1 6 23 1e-06 0.0014 18.9 2.4 1 25 334 357 334 358 0.90 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF473-202 - 871 1.8e-103 334.8 169.1 7 23 0.0053 7.3 7.2 1.5 1 26 361 386 357 386 0.66 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF473-202 - 871 1.8e-103 334.8 169.1 8 23 0.00022 0.31 11.6 0.1 4 26 392 414 390 414 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF473-202 - 871 1.8e-103 334.8 169.1 9 23 4.8e-10 6.6e-07 29.5 1.9 2 24 418 440 417 442 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF473-202 - 871 1.8e-103 334.8 169.1 10 23 2e-06 0.0028 18.0 3.5 1 25 445 469 445 470 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF473-202 - 871 1.8e-103 334.8 169.1 11 23 1.9e-08 2.7e-05 24.4 0.6 1 25 473 497 473 498 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF473-202 - 871 1.8e-103 334.8 169.1 12 23 1e-08 1.4e-05 25.3 1.3 2 24 502 524 501 526 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF473-202 - 871 1.8e-103 334.8 169.1 13 23 0.012 16 6.1 2.2 14 25 559 572 533 573 0.83 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF473-202 - 871 1.8e-103 334.8 169.1 14 23 1.1e-09 1.6e-06 28.3 0.1 2 25 577 601 576 602 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF473-202 - 871 1.8e-103 334.8 169.1 15 23 2.6e-05 0.036 14.5 5.8 8 26 639 657 637 657 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF473-202 - 871 1.8e-103 334.8 169.1 16 23 7e-09 9.7e-06 25.8 0.8 1 25 660 684 660 685 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF473-202 - 871 1.8e-103 334.8 169.1 17 23 5.3e-07 0.00073 19.9 0.8 2 25 689 712 688 713 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF473-202 - 871 1.8e-103 334.8 169.1 18 23 6.2e-11 8.6e-08 32.3 0.2 2 24 717 739 717 740 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF473-202 - 871 1.8e-103 334.8 169.1 19 23 2.7e-12 3.7e-09 36.6 0.1 2 25 745 768 744 769 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF473-202 - 871 1.8e-103 334.8 169.1 20 23 2.3e-10 3.2e-07 30.5 0.1 2 25 773 796 773 797 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF473-202 - 871 1.8e-103 334.8 169.1 21 23 2.8e-11 3.9e-08 33.4 0.1 1 25 800 824 800 824 0.97 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF473-202 - 871 1.8e-103 334.8 169.1 22 23 2.6e-08 3.6e-05 24.0 2.8 1 25 828 852 828 853 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF473-202 - 871 1.8e-103 334.8 169.1 23 23 0.02 27 5.4 0.2 1 12 856 867 856 870 0.85 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZNF473-202 - 871 7.3e-76 246.6 175.6 1 21 3.5e-07 0.00048 20.4 0.6 1 23 209 231 209 231 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF473-202 - 871 7.3e-76 246.6 175.6 2 21 6.6 9e+03 -2.5 0.0 5 16 241 252 240 254 0.85 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF473-202 - 871 7.3e-76 246.6 175.6 3 21 0.1 1.4e+02 3.2 0.2 7 23 271 286 265 286 0.81 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF473-202 - 871 7.3e-76 246.6 175.6 4 21 4.1e-08 5.6e-05 23.4 2.2 1 23 320 342 320 342 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF473-202 - 871 7.3e-76 246.6 175.6 5 21 4.8e-05 0.066 13.7 3.1 1 23 347 369 347 369 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF473-202 - 871 7.3e-76 246.6 175.6 6 21 1e-06 0.0014 19.0 0.4 2 23 376 397 375 397 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF473-202 - 871 7.3e-76 246.6 175.6 7 21 6.5e-05 0.089 13.3 1.5 2 23 404 425 403 425 0.85 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF473-202 - 871 7.3e-76 246.6 175.6 8 21 4.6e-06 0.0064 16.9 6.7 1 23 431 453 431 453 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF473-202 - 871 7.3e-76 246.6 175.6 9 21 1.2e-07 0.00016 21.9 3.6 1 23 459 481 459 481 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF473-202 - 871 7.3e-76 246.6 175.6 10 21 1.1e-05 0.015 15.7 0.7 1 23 487 509 487 509 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF473-202 - 871 7.3e-76 246.6 175.6 11 21 0.25 3.5e+02 2.0 2.6 1 11 515 525 515 537 0.82 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF473-202 - 871 7.3e-76 246.6 175.6 12 21 0.00047 0.64 10.6 5.2 1 23 562 584 562 584 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF473-202 - 871 7.3e-76 246.6 175.6 13 21 2e-06 0.0028 18.0 0.7 1 23 591 613 591 613 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF473-202 - 871 7.3e-76 246.6 175.6 14 21 5.6e-08 7.7e-05 22.9 3.9 1 23 646 668 646 668 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF473-202 - 871 7.3e-76 246.6 175.6 15 21 2.9e-07 0.0004 20.7 2.2 1 23 674 696 674 696 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF473-202 - 871 7.3e-76 246.6 175.6 16 21 4.7e-08 6.5e-05 23.2 2.6 2 23 703 724 702 724 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF473-202 - 871 7.3e-76 246.6 175.6 17 21 1.4e-07 0.00019 21.7 0.1 1 23 730 752 730 752 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF473-202 - 871 7.3e-76 246.6 175.6 18 21 8.3e-08 0.00011 22.4 1.5 1 23 758 780 758 780 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF473-202 - 871 7.3e-76 246.6 175.6 19 21 2.8e-09 3.8e-06 27.0 0.1 1 23 786 808 786 808 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF473-202 - 871 7.3e-76 246.6 175.6 20 21 3e-07 0.00042 20.6 0.5 1 23 814 836 814 836 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF473-202 - 871 7.3e-76 246.6 175.6 21 21 0.0005 0.68 10.5 7.0 1 23 842 864 842 864 0.99 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZNF473-202 - 871 8.7e-44 144.4 163.7 1 20 3.4e-07 0.00047 20.8 0.7 1 23 209 231 209 232 0.97 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF473-202 - 871 8.7e-44 144.4 163.7 2 20 8.7 1.2e+04 -2.3 0.1 7 23 271 286 266 287 0.63 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF473-202 - 871 8.7e-44 144.4 163.7 3 20 6.2e-05 0.086 13.7 1.3 1 23 320 342 320 343 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF473-202 - 871 8.7e-44 144.4 163.7 4 20 3.8e-05 0.052 14.4 1.8 1 23 347 369 347 370 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF473-202 - 871 8.7e-44 144.4 163.7 5 20 0.0056 7.8 7.6 0.4 2 23 376 397 375 398 0.83 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF473-202 - 871 8.7e-44 144.4 163.7 6 20 0.67 9.3e+02 1.2 0.8 7 23 409 425 403 426 0.79 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF473-202 - 871 8.7e-44 144.4 163.7 7 20 0.00036 0.5 11.3 4.9 1 23 431 453 431 454 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF473-202 - 871 8.7e-44 144.4 163.7 8 20 0.00015 0.2 12.6 3.0 1 23 459 481 459 482 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF473-202 - 871 8.7e-44 144.4 163.7 9 20 3.9e-05 0.054 14.4 0.6 1 23 487 509 487 510 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF473-202 - 871 8.7e-44 144.4 163.7 10 20 0.0017 2.4 9.3 2.2 1 23 515 537 515 538 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF473-202 - 871 8.7e-44 144.4 163.7 11 20 5.8e-05 0.08 13.8 4.4 1 23 562 584 562 585 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF473-202 - 871 8.7e-44 144.4 163.7 12 20 1.9e-05 0.026 15.4 0.6 1 23 591 613 591 614 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF473-202 - 871 8.7e-44 144.4 163.7 13 20 3.8e-05 0.052 14.4 2.7 1 23 646 668 646 669 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF473-202 - 871 8.7e-44 144.4 163.7 14 20 1.1e-05 0.015 16.1 1.2 1 23 674 696 674 697 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF473-202 - 871 8.7e-44 144.4 163.7 15 20 7.6e-05 0.1 13.5 2.5 2 23 703 724 702 725 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF473-202 - 871 8.7e-44 144.4 163.7 16 20 5e-05 0.07 14.0 0.1 1 23 730 752 730 753 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF473-202 - 871 8.7e-44 144.4 163.7 17 20 0.00025 0.34 11.9 1.7 1 23 758 780 758 781 0.91 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF473-202 - 871 8.7e-44 144.4 163.7 18 20 6.4e-05 0.088 13.7 0.1 1 23 786 808 786 809 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF473-202 - 871 8.7e-44 144.4 163.7 19 20 6.3e-05 0.087 13.7 0.7 1 23 814 836 814 837 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF473-202 - 871 8.7e-44 144.4 163.7 20 20 0.00021 0.29 12.1 5.9 1 23 842 864 842 865 0.96 C2H2-type zinc finger Zn-ribbon_8 PF09723.10 40 ZNF473-202 - 871 2.3e-09 37.2 105.7 1 15 0.0026 3.6 7.8 0.5 6 34 209 244 208 249 0.70 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF473-202 - 871 2.3e-09 37.2 105.7 2 15 3.9 5.4e+03 -2.4 0.1 6 17 265 280 265 294 0.65 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF473-202 - 871 2.3e-09 37.2 105.7 3 15 0.0029 3.9 7.7 0.2 6 19 320 333 319 345 0.79 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF473-202 - 871 2.3e-09 37.2 105.7 4 15 6.9e-05 0.095 12.8 2.8 6 34 347 382 344 386 0.87 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF473-202 - 871 2.3e-09 37.2 105.7 5 15 0.00084 1.2 9.4 1.3 6 38 403 442 402 444 0.85 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF473-202 - 871 2.3e-09 37.2 105.7 6 15 0.0046 6.4 7.0 3.9 6 32 431 464 429 471 0.78 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF473-202 - 871 2.3e-09 37.2 105.7 7 15 0.031 42 4.4 4.0 7 34 460 494 455 499 0.88 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF473-202 - 871 2.3e-09 37.2 105.7 8 15 0.017 23 5.2 1.5 6 15 515 524 514 525 0.94 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF473-202 - 871 2.3e-09 37.2 105.7 9 15 0.52 7.1e+02 0.4 7.7 6 34 562 598 561 607 0.80 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF473-202 - 871 2.3e-09 37.2 105.7 10 15 0.0027 3.8 7.7 0.1 6 20 646 660 644 672 0.81 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF473-202 - 871 2.3e-09 37.2 105.7 11 15 0.0002 0.28 11.3 2.1 6 37 674 712 673 715 0.77 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF473-202 - 871 2.3e-09 37.2 105.7 12 15 0.00044 0.6 10.3 1.2 7 34 703 737 702 742 0.91 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF473-202 - 871 2.3e-09 37.2 105.7 13 15 0.00014 0.2 11.8 1.0 6 36 730 767 729 771 0.89 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF473-202 - 871 2.3e-09 37.2 105.7 14 15 3.2e-05 0.044 13.9 1.4 6 34 786 821 785 824 0.93 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF473-202 - 871 2.3e-09 37.2 105.7 15 15 0.15 2.1e+02 2.1 2.7 6 16 842 852 841 870 0.73 Zinc ribbon domain zf-C2H2_6 PF13912.6 27 ZNF473-202 - 871 1.8e-08 34.2 147.7 1 20 0.00017 0.24 11.5 0.9 2 24 209 231 209 234 0.79 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF473-202 - 871 1.8e-08 34.2 147.7 2 20 6.7 9.3e+03 -3.2 0.2 18 24 308 314 308 316 0.86 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF473-202 - 871 1.8e-08 34.2 147.7 3 20 0.00052 0.71 9.9 1.4 2 24 320 342 319 345 0.82 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF473-202 - 871 1.8e-08 34.2 147.7 4 20 0.00043 0.59 10.2 2.6 1 24 346 369 346 372 0.76 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF473-202 - 871 1.8e-08 34.2 147.7 5 20 0.025 34 4.6 0.1 3 12 376 385 376 395 0.90 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF473-202 - 871 1.8e-08 34.2 147.7 6 20 4.6 6.4e+03 -2.7 0.1 2 12 403 413 403 413 0.84 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF473-202 - 871 1.8e-08 34.2 147.7 7 20 3.4e-05 0.047 13.7 5.2 2 24 431 453 431 454 0.95 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF473-202 - 871 1.8e-08 34.2 147.7 8 20 0.0054 7.5 6.7 0.5 2 13 459 470 459 483 0.82 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF473-202 - 871 1.8e-08 34.2 147.7 9 20 0.046 64 3.7 0.3 2 12 487 497 487 507 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF473-202 - 871 1.8e-08 34.2 147.7 10 20 0.0034 4.7 7.3 0.7 2 11 515 524 515 524 0.97 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF473-202 - 871 1.8e-08 34.2 147.7 11 20 0.37 5.1e+02 0.8 5.9 2 12 562 572 561 584 0.86 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF473-202 - 871 1.8e-08 34.2 147.7 12 20 0.00045 0.62 10.1 0.5 2 22 591 611 591 616 0.77 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF473-202 - 871 1.8e-08 34.2 147.7 13 20 0.002 2.8 8.0 2.2 2 12 646 656 646 657 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF473-202 - 871 1.8e-08 34.2 147.7 14 20 0.0092 13 6.0 0.8 2 12 674 684 674 699 0.76 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF473-202 - 871 1.8e-08 34.2 147.7 15 20 0.013 19 5.4 1.7 4 12 704 712 703 720 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF473-202 - 871 1.8e-08 34.2 147.7 16 20 0.0017 2.4 8.3 0.1 2 11 730 739 730 741 0.92 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF473-202 - 871 1.8e-08 34.2 147.7 17 20 0.003 4.1 7.5 0.4 2 11 758 767 758 769 0.92 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF473-202 - 871 1.8e-08 34.2 147.7 18 20 0.015 21 5.3 0.3 2 20 786 804 786 810 0.79 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF473-202 - 871 1.8e-08 34.2 147.7 19 20 0.01 14 5.8 0.5 2 13 814 825 814 839 0.71 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF473-202 - 871 1.8e-08 34.2 147.7 20 20 1.5 2e+03 -1.1 3.3 2 12 842 852 841 867 0.78 C2H2-type zinc finger KRAB PF01352.27 42 ZNF473-202 - 871 2.1e-08 33.7 0.2 1 1 3.1e-11 4.3e-08 32.7 0.2 2 42 6 46 5 46 0.98 KRAB box XPA_N PF01286.18 32 ZNF473-202 - 871 5.3e-08 32.8 91.7 1 18 0.0011 1.5 8.9 0.2 3 15 210 222 208 227 0.89 XPA protein N-terminal XPA_N PF01286.18 32 ZNF473-202 - 871 5.3e-08 32.8 91.7 2 18 0.013 18 5.5 0.1 3 12 321 330 320 336 0.90 XPA protein N-terminal XPA_N PF01286.18 32 ZNF473-202 - 871 5.3e-08 32.8 91.7 3 18 0.61 8.5e+02 0.1 0.2 3 11 348 356 346 358 0.86 XPA protein N-terminal XPA_N PF01286.18 32 ZNF473-202 - 871 5.3e-08 32.8 91.7 4 18 0.00026 0.36 10.9 0.1 3 17 376 390 374 393 0.89 XPA protein N-terminal XPA_N PF01286.18 32 ZNF473-202 - 871 5.3e-08 32.8 91.7 5 18 0.012 16 5.6 0.1 3 12 432 441 430 443 0.90 XPA protein N-terminal XPA_N PF01286.18 32 ZNF473-202 - 871 5.3e-08 32.8 91.7 6 18 0.15 2.1e+02 2.1 0.1 3 12 460 469 458 477 0.81 XPA protein N-terminal XPA_N PF01286.18 32 ZNF473-202 - 871 5.3e-08 32.8 91.7 7 18 0.11 1.5e+02 2.5 0.3 4 13 489 498 486 499 0.89 XPA protein N-terminal XPA_N PF01286.18 32 ZNF473-202 - 871 5.3e-08 32.8 91.7 8 18 0.098 1.4e+02 2.7 1.4 3 11 516 524 514 527 0.90 XPA protein N-terminal XPA_N PF01286.18 32 ZNF473-202 - 871 5.3e-08 32.8 91.7 9 18 0.051 70 3.6 5.5 3 18 563 578 561 581 0.91 XPA protein N-terminal XPA_N PF01286.18 32 ZNF473-202 - 871 5.3e-08 32.8 91.7 10 18 0.0028 3.9 7.6 0.2 3 14 592 603 590 605 0.93 XPA protein N-terminal XPA_N PF01286.18 32 ZNF473-202 - 871 5.3e-08 32.8 91.7 11 18 0.0025 3.5 7.8 0.2 3 14 647 658 645 664 0.87 XPA protein N-terminal XPA_N PF01286.18 32 ZNF473-202 - 871 5.3e-08 32.8 91.7 12 18 0.71 9.8e+02 -0.1 0.1 3 12 675 684 673 690 0.80 XPA protein N-terminal XPA_N PF01286.18 32 ZNF473-202 - 871 5.3e-08 32.8 91.7 13 18 0.0029 4 7.6 0.7 3 14 703 714 701 720 0.85 XPA protein N-terminal XPA_N PF01286.18 32 ZNF473-202 - 871 5.3e-08 32.8 91.7 14 18 0.047 65 3.7 0.0 3 14 731 742 729 743 0.86 XPA protein N-terminal XPA_N PF01286.18 32 ZNF473-202 - 871 5.3e-08 32.8 91.7 15 18 0.0017 2.3 8.3 0.8 3 14 759 770 757 774 0.91 XPA protein N-terminal XPA_N PF01286.18 32 ZNF473-202 - 871 5.3e-08 32.8 91.7 16 18 0.034 47 4.1 0.1 3 12 787 796 785 798 0.88 XPA protein N-terminal XPA_N PF01286.18 32 ZNF473-202 - 871 5.3e-08 32.8 91.7 17 18 0.36 5e+02 0.9 0.0 4 14 816 826 813 831 0.80 XPA protein N-terminal XPA_N PF01286.18 32 ZNF473-202 - 871 5.3e-08 32.8 91.7 18 18 0.23 3.2e+02 1.5 0.6 3 11 843 851 842 860 0.84 XPA protein N-terminal # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF473-202.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF473-202.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF473-202.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF473-202.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF473-202.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:07:05 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZNF473-203 - 859 1.1e-103 335.4 169.0 1 23 7.9e-07 0.0011 19.3 0.1 9 25 191 207 180 207 0.81 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF473-203 - 859 1.1e-103 335.4 169.0 2 23 0.19 2.6e+02 2.3 0.4 2 18 212 231 211 233 0.80 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF473-203 - 859 1.1e-103 335.4 169.0 3 23 0.056 77 4.0 0.5 7 25 245 263 245 264 0.85 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF473-203 - 859 1.1e-103 335.4 169.0 4 23 0.0037 5.1 7.7 0.2 4 14 269 279 267 282 0.89 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF473-203 - 859 1.1e-103 335.4 169.0 5 23 2.7e-06 0.0038 17.6 1.7 5 26 298 319 297 319 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF473-203 - 859 1.1e-103 335.4 169.0 6 23 1e-06 0.0014 19.0 2.4 1 25 322 345 322 346 0.90 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF473-203 - 859 1.1e-103 335.4 169.0 7 23 0.0049 6.7 7.3 1.4 1 26 349 374 345 374 0.66 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF473-203 - 859 1.1e-103 335.4 169.0 8 23 0.00022 0.3 11.6 0.1 4 26 380 402 378 402 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF473-203 - 859 1.1e-103 335.4 169.0 9 23 4.7e-10 6.5e-07 29.5 1.9 2 24 406 428 405 430 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF473-203 - 859 1.1e-103 335.4 169.0 10 23 2e-06 0.0028 18.0 3.5 1 25 433 457 433 458 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF473-203 - 859 1.1e-103 335.4 169.0 11 23 1.9e-08 2.6e-05 24.4 0.6 1 25 461 485 461 486 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF473-203 - 859 1.1e-103 335.4 169.0 12 23 1e-08 1.4e-05 25.3 1.3 2 24 490 512 489 514 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF473-203 - 859 1.1e-103 335.4 169.0 13 23 0.012 16 6.1 2.2 14 25 547 560 521 561 0.83 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF473-203 - 859 1.1e-103 335.4 169.0 14 23 1.1e-09 1.5e-06 28.3 0.1 2 25 565 589 564 590 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF473-203 - 859 1.1e-103 335.4 169.0 15 23 2.5e-05 0.035 14.5 5.8 8 26 627 645 625 645 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF473-203 - 859 1.1e-103 335.4 169.0 16 23 6.9e-09 9.6e-06 25.8 0.8 1 25 648 672 648 673 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF473-203 - 859 1.1e-103 335.4 169.0 17 23 5.2e-07 0.00072 19.9 0.8 2 25 677 700 676 701 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF473-203 - 859 1.1e-103 335.4 169.0 18 23 6.1e-11 8.4e-08 32.3 0.2 2 24 705 727 705 728 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF473-203 - 859 1.1e-103 335.4 169.0 19 23 2.6e-12 3.6e-09 36.6 0.1 2 25 733 756 732 757 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF473-203 - 859 1.1e-103 335.4 169.0 20 23 2.3e-10 3.2e-07 30.5 0.1 2 25 761 784 761 785 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF473-203 - 859 1.1e-103 335.4 169.0 21 23 2.8e-11 3.8e-08 33.4 0.1 1 25 788 812 788 812 0.97 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF473-203 - 859 1.1e-103 335.4 169.0 22 23 2.6e-08 3.5e-05 24.0 2.8 1 25 816 840 816 841 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF473-203 - 859 1.1e-103 335.4 169.0 23 23 0.02 27 5.4 0.2 1 12 844 855 844 858 0.85 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZNF473-203 - 859 5.3e-76 247.1 175.6 1 21 3.4e-07 0.00047 20.5 0.6 1 23 197 219 197 219 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF473-203 - 859 5.3e-76 247.1 175.6 2 21 6.5 8.9e+03 -2.5 0.0 5 16 229 240 228 242 0.85 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF473-203 - 859 5.3e-76 247.1 175.6 3 21 0.1 1.4e+02 3.2 0.2 7 23 259 274 253 274 0.81 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF473-203 - 859 5.3e-76 247.1 175.6 4 21 4e-08 5.6e-05 23.4 2.2 1 23 308 330 308 330 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF473-203 - 859 5.3e-76 247.1 175.6 5 21 4.7e-05 0.065 13.7 3.1 1 23 335 357 335 357 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF473-203 - 859 5.3e-76 247.1 175.6 6 21 1e-06 0.0014 19.0 0.4 2 23 364 385 363 385 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF473-203 - 859 5.3e-76 247.1 175.6 7 21 6.4e-05 0.088 13.3 1.5 2 23 392 413 391 413 0.85 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF473-203 - 859 5.3e-76 247.1 175.6 8 21 4.5e-06 0.0063 16.9 6.7 1 23 419 441 419 441 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF473-203 - 859 5.3e-76 247.1 175.6 9 21 1.2e-07 0.00016 21.9 3.6 1 23 447 469 447 469 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF473-203 - 859 5.3e-76 247.1 175.6 10 21 1.1e-05 0.015 15.8 0.7 1 23 475 497 475 497 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF473-203 - 859 5.3e-76 247.1 175.6 11 21 0.25 3.4e+02 2.0 2.6 1 11 503 513 503 525 0.82 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF473-203 - 859 5.3e-76 247.1 175.6 12 21 0.00046 0.63 10.6 5.2 1 23 550 572 550 572 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF473-203 - 859 5.3e-76 247.1 175.6 13 21 2e-06 0.0027 18.1 0.7 1 23 579 601 579 601 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF473-203 - 859 5.3e-76 247.1 175.6 14 21 5.5e-08 7.6e-05 22.9 3.9 1 23 634 656 634 656 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF473-203 - 859 5.3e-76 247.1 175.6 15 21 2.9e-07 0.00039 20.7 2.2 1 23 662 684 662 684 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF473-203 - 859 5.3e-76 247.1 175.6 16 21 4.6e-08 6.4e-05 23.2 2.6 2 23 691 712 690 712 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF473-203 - 859 5.3e-76 247.1 175.6 17 21 1.4e-07 0.00019 21.7 0.1 1 23 718 740 718 740 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF473-203 - 859 5.3e-76 247.1 175.6 18 21 8.2e-08 0.00011 22.4 1.5 1 23 746 768 746 768 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF473-203 - 859 5.3e-76 247.1 175.6 19 21 2.7e-09 3.7e-06 27.1 0.1 1 23 774 796 774 796 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF473-203 - 859 5.3e-76 247.1 175.6 20 21 3e-07 0.00041 20.6 0.5 1 23 802 824 802 824 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF473-203 - 859 5.3e-76 247.1 175.6 21 21 0.00049 0.67 10.5 7.0 1 23 830 852 830 852 0.99 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZNF473-203 - 859 2.1e-43 143.2 165.3 1 20 3.4e-07 0.00047 20.8 0.7 1 23 197 219 197 220 0.97 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF473-203 - 859 2.1e-43 143.2 165.3 2 20 8.5 1.2e+04 -2.3 0.1 7 23 259 274 254 275 0.63 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF473-203 - 859 2.1e-43 143.2 165.3 3 20 6.1e-05 0.085 13.7 1.3 1 23 308 330 308 331 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF473-203 - 859 2.1e-43 143.2 165.3 4 20 3.7e-05 0.051 14.4 1.8 1 23 335 357 335 358 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF473-203 - 859 2.1e-43 143.2 165.3 5 20 0.0055 7.7 7.7 0.4 2 23 364 385 363 386 0.83 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF473-203 - 859 2.1e-43 143.2 165.3 6 20 0.66 9.1e+02 1.2 0.8 7 23 397 413 391 414 0.79 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF473-203 - 859 2.1e-43 143.2 165.3 7 20 0.00036 0.49 11.4 4.9 1 23 419 441 419 442 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF473-203 - 859 2.1e-43 143.2 165.3 8 20 0.00014 0.2 12.6 3.0 1 23 447 469 447 470 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF473-203 - 859 2.1e-43 143.2 165.3 9 20 3.9e-05 0.053 14.4 0.6 1 23 475 497 475 498 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF473-203 - 859 2.1e-43 143.2 165.3 10 20 0.0017 2.3 9.3 2.2 1 23 503 525 503 526 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF473-203 - 859 2.1e-43 143.2 165.3 11 20 5.7e-05 0.079 13.8 4.4 1 23 550 572 550 573 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF473-203 - 859 2.1e-43 143.2 165.3 12 20 1.8e-05 0.025 15.4 0.6 1 23 579 601 579 602 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF473-203 - 859 2.1e-43 143.2 165.3 13 20 3.7e-05 0.051 14.4 2.7 1 23 634 656 634 657 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF473-203 - 859 2.1e-43 143.2 165.3 14 20 1e-05 0.014 16.1 1.2 1 23 662 684 662 685 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF473-203 - 859 2.1e-43 143.2 165.3 15 20 7.4e-05 0.1 13.5 2.5 2 23 691 712 690 713 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF473-203 - 859 2.1e-43 143.2 165.3 16 20 5e-05 0.068 14.0 0.1 1 23 718 740 718 741 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF473-203 - 859 2.1e-43 143.2 165.3 17 20 0.00024 0.33 11.9 1.7 1 23 746 768 746 769 0.91 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF473-203 - 859 2.1e-43 143.2 165.3 18 20 6.3e-05 0.087 13.7 0.1 1 23 774 796 774 797 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF473-203 - 859 2.1e-43 143.2 165.3 19 20 6.2e-05 0.086 13.7 0.7 1 23 802 824 802 825 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF473-203 - 859 2.1e-43 143.2 165.3 20 20 0.00021 0.28 12.1 5.9 1 23 830 852 830 853 0.96 C2H2-type zinc finger Zn-ribbon_8 PF09723.10 40 ZNF473-203 - 859 2.3e-09 37.2 106.0 1 15 0.0026 3.6 7.8 0.5 6 34 197 232 196 237 0.70 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF473-203 - 859 2.3e-09 37.2 106.0 2 15 3.9 5.3e+03 -2.4 0.1 6 17 253 268 253 282 0.65 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF473-203 - 859 2.3e-09 37.2 106.0 3 15 0.0028 3.9 7.7 0.2 6 19 308 321 307 333 0.79 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF473-203 - 859 2.3e-09 37.2 106.0 4 15 6.8e-05 0.094 12.9 2.8 6 34 335 370 332 374 0.87 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF473-203 - 859 2.3e-09 37.2 106.0 5 15 0.00078 1.1 9.5 1.2 6 38 391 430 390 432 0.85 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF473-203 - 859 2.3e-09 37.2 106.0 6 15 0.0044 6.1 7.1 3.9 6 32 419 452 418 459 0.78 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF473-203 - 859 2.3e-09 37.2 106.0 7 15 0.037 50 4.1 4.3 7 34 448 482 443 486 0.88 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF473-203 - 859 2.3e-09 37.2 106.0 8 15 0.016 22 5.2 1.5 6 15 503 512 502 513 0.94 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF473-203 - 859 2.3e-09 37.2 106.0 9 15 0.53 7.3e+02 0.4 7.8 6 34 550 586 549 595 0.80 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF473-203 - 859 2.3e-09 37.2 106.0 10 15 0.0027 3.7 7.7 0.1 6 20 634 648 632 660 0.81 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF473-203 - 859 2.3e-09 37.2 106.0 11 15 0.00021 0.28 11.3 2.2 6 37 662 700 661 703 0.77 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF473-203 - 859 2.3e-09 37.2 106.0 12 15 0.00049 0.67 10.1 1.3 7 34 691 725 690 729 0.91 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF473-203 - 859 2.3e-09 37.2 106.0 13 15 0.00015 0.2 11.8 1.1 6 36 718 755 717 759 0.89 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF473-203 - 859 2.3e-09 37.2 106.0 14 15 3.2e-05 0.044 13.9 1.4 6 34 774 809 773 812 0.93 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF473-203 - 859 2.3e-09 37.2 106.0 15 15 0.15 2.1e+02 2.2 2.7 6 16 830 840 829 858 0.73 Zinc ribbon domain zf-C2H2_6 PF13912.6 27 ZNF473-203 - 859 1.4e-08 34.6 147.7 1 20 0.00017 0.23 11.5 0.9 2 24 197 219 197 222 0.79 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF473-203 - 859 1.4e-08 34.6 147.7 2 20 6.6 9.1e+03 -3.2 0.2 18 24 296 302 296 304 0.86 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF473-203 - 859 1.4e-08 34.6 147.7 3 20 0.00051 0.7 10.0 1.4 2 24 308 330 307 333 0.82 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF473-203 - 859 1.4e-08 34.6 147.7 4 20 0.00042 0.59 10.2 2.6 1 24 334 357 334 360 0.76 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF473-203 - 859 1.4e-08 34.6 147.7 5 20 0.024 34 4.6 0.1 3 12 364 373 364 383 0.90 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF473-203 - 859 1.4e-08 34.6 147.7 6 20 4.6 6.3e+03 -2.6 0.1 2 12 391 401 391 401 0.84 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF473-203 - 859 1.4e-08 34.6 147.7 7 20 3.3e-05 0.046 13.7 5.2 2 24 419 441 419 442 0.95 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF473-203 - 859 1.4e-08 34.6 147.7 8 20 0.0053 7.3 6.7 0.5 2 13 447 458 447 471 0.82 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF473-203 - 859 1.4e-08 34.6 147.7 9 20 0.046 63 3.7 0.3 2 12 475 485 475 495 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF473-203 - 859 1.4e-08 34.6 147.7 10 20 0.0034 4.6 7.3 0.7 2 11 503 512 503 512 0.97 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF473-203 - 859 1.4e-08 34.6 147.7 11 20 0.37 5e+02 0.8 5.9 2 12 550 560 549 572 0.86 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF473-203 - 859 1.4e-08 34.6 147.7 12 20 0.00044 0.61 10.2 0.5 2 22 579 599 579 604 0.77 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF473-203 - 859 1.4e-08 34.6 147.7 13 20 0.002 2.8 8.1 2.2 2 12 634 644 634 645 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF473-203 - 859 1.4e-08 34.6 147.7 14 20 0.009 12 6.0 0.8 2 12 662 672 662 687 0.76 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF473-203 - 859 1.4e-08 34.6 147.7 15 20 0.013 18 5.4 1.7 4 12 692 700 691 708 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF473-203 - 859 1.4e-08 34.6 147.7 16 20 0.0017 2.3 8.3 0.1 2 11 718 727 718 729 0.92 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF473-203 - 859 1.4e-08 34.6 147.7 17 20 0.0029 4 7.5 0.4 2 11 746 755 746 757 0.92 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF473-203 - 859 1.4e-08 34.6 147.7 18 20 0.015 20 5.3 0.3 2 20 774 792 774 798 0.79 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF473-203 - 859 1.4e-08 34.6 147.7 19 20 0.0099 14 5.8 0.5 2 13 802 813 802 827 0.71 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF473-203 - 859 1.4e-08 34.6 147.7 20 20 1.5 2e+03 -1.1 3.3 2 12 830 840 829 855 0.78 C2H2-type zinc finger XPA_N PF01286.18 32 ZNF473-203 - 859 4e-08 33.1 91.7 1 18 0.0011 1.5 8.9 0.2 3 15 198 210 196 215 0.89 XPA protein N-terminal XPA_N PF01286.18 32 ZNF473-203 - 859 4e-08 33.1 91.7 2 18 0.013 18 5.5 0.1 3 12 309 318 308 324 0.90 XPA protein N-terminal XPA_N PF01286.18 32 ZNF473-203 - 859 4e-08 33.1 91.7 3 18 0.6 8.3e+02 0.1 0.2 3 11 336 344 334 346 0.86 XPA protein N-terminal XPA_N PF01286.18 32 ZNF473-203 - 859 4e-08 33.1 91.7 4 18 0.00026 0.36 10.9 0.1 3 17 364 378 362 381 0.89 XPA protein N-terminal XPA_N PF01286.18 32 ZNF473-203 - 859 4e-08 33.1 91.7 5 18 0.011 16 5.7 0.1 3 12 420 429 418 431 0.90 XPA protein N-terminal XPA_N PF01286.18 32 ZNF473-203 - 859 4e-08 33.1 91.7 6 18 0.15 2.1e+02 2.1 0.1 3 12 448 457 446 465 0.81 XPA protein N-terminal XPA_N PF01286.18 32 ZNF473-203 - 859 4e-08 33.1 91.7 7 18 0.11 1.5e+02 2.5 0.3 4 13 477 486 474 487 0.89 XPA protein N-terminal XPA_N PF01286.18 32 ZNF473-203 - 859 4e-08 33.1 91.7 8 18 0.097 1.3e+02 2.7 1.4 3 11 504 512 502 515 0.90 XPA protein N-terminal XPA_N PF01286.18 32 ZNF473-203 - 859 4e-08 33.1 91.7 9 18 0.05 69 3.6 5.5 3 18 551 566 549 569 0.91 XPA protein N-terminal XPA_N PF01286.18 32 ZNF473-203 - 859 4e-08 33.1 91.7 10 18 0.0028 3.9 7.6 0.2 3 14 580 591 578 593 0.93 XPA protein N-terminal XPA_N PF01286.18 32 ZNF473-203 - 859 4e-08 33.1 91.7 11 18 0.0025 3.4 7.8 0.2 3 14 635 646 633 652 0.87 XPA protein N-terminal XPA_N PF01286.18 32 ZNF473-203 - 859 4e-08 33.1 91.7 12 18 0.7 9.7e+02 -0.1 0.1 3 12 663 672 661 678 0.80 XPA protein N-terminal XPA_N PF01286.18 32 ZNF473-203 - 859 4e-08 33.1 91.7 13 18 0.0028 3.9 7.6 0.7 3 14 691 702 689 708 0.85 XPA protein N-terminal XPA_N PF01286.18 32 ZNF473-203 - 859 4e-08 33.1 91.7 14 18 0.046 64 3.7 0.0 3 14 719 730 717 731 0.86 XPA protein N-terminal XPA_N PF01286.18 32 ZNF473-203 - 859 4e-08 33.1 91.7 15 18 0.0016 2.3 8.4 0.8 3 14 747 758 745 762 0.91 XPA protein N-terminal XPA_N PF01286.18 32 ZNF473-203 - 859 4e-08 33.1 91.7 16 18 0.034 46 4.2 0.1 3 12 775 784 773 786 0.88 XPA protein N-terminal XPA_N PF01286.18 32 ZNF473-203 - 859 4e-08 33.1 91.7 17 18 0.36 4.9e+02 0.9 0.0 4 14 804 814 801 819 0.80 XPA protein N-terminal XPA_N PF01286.18 32 ZNF473-203 - 859 4e-08 33.1 91.7 18 18 0.23 3.1e+02 1.5 0.6 3 11 831 839 830 848 0.84 XPA protein N-terminal # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF473-203.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF473-203.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF473-203.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF473-203.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF473-203.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:07:06 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF473-204.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF473-204.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF473-204.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF473-204.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF473-204.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:07:06 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZNF473-205 - 871 1.8e-103 334.8 169.1 1 23 8e-07 0.0011 19.3 0.1 9 25 203 219 192 219 0.81 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF473-205 - 871 1.8e-103 334.8 169.1 2 23 0.19 2.7e+02 2.3 0.4 2 18 224 243 223 245 0.80 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF473-205 - 871 1.8e-103 334.8 169.1 3 23 0.057 78 4.0 0.5 7 25 257 275 257 276 0.85 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF473-205 - 871 1.8e-103 334.8 169.1 4 23 0.0038 5.2 7.7 0.2 4 14 281 291 279 294 0.89 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF473-205 - 871 1.8e-103 334.8 169.1 5 23 2.8e-06 0.0038 17.6 1.7 5 26 310 331 309 331 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF473-205 - 871 1.8e-103 334.8 169.1 6 23 1e-06 0.0014 18.9 2.4 1 25 334 357 334 358 0.90 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF473-205 - 871 1.8e-103 334.8 169.1 7 23 0.0053 7.3 7.2 1.5 1 26 361 386 357 386 0.66 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF473-205 - 871 1.8e-103 334.8 169.1 8 23 0.00022 0.31 11.6 0.1 4 26 392 414 390 414 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF473-205 - 871 1.8e-103 334.8 169.1 9 23 4.8e-10 6.6e-07 29.5 1.9 2 24 418 440 417 442 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF473-205 - 871 1.8e-103 334.8 169.1 10 23 2e-06 0.0028 18.0 3.5 1 25 445 469 445 470 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF473-205 - 871 1.8e-103 334.8 169.1 11 23 1.9e-08 2.7e-05 24.4 0.6 1 25 473 497 473 498 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF473-205 - 871 1.8e-103 334.8 169.1 12 23 1e-08 1.4e-05 25.3 1.3 2 24 502 524 501 526 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF473-205 - 871 1.8e-103 334.8 169.1 13 23 0.012 16 6.1 2.2 14 25 559 572 533 573 0.83 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF473-205 - 871 1.8e-103 334.8 169.1 14 23 1.1e-09 1.6e-06 28.3 0.1 2 25 577 601 576 602 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF473-205 - 871 1.8e-103 334.8 169.1 15 23 2.6e-05 0.036 14.5 5.8 8 26 639 657 637 657 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF473-205 - 871 1.8e-103 334.8 169.1 16 23 7e-09 9.7e-06 25.8 0.8 1 25 660 684 660 685 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF473-205 - 871 1.8e-103 334.8 169.1 17 23 5.3e-07 0.00073 19.9 0.8 2 25 689 712 688 713 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF473-205 - 871 1.8e-103 334.8 169.1 18 23 6.2e-11 8.6e-08 32.3 0.2 2 24 717 739 717 740 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF473-205 - 871 1.8e-103 334.8 169.1 19 23 2.7e-12 3.7e-09 36.6 0.1 2 25 745 768 744 769 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF473-205 - 871 1.8e-103 334.8 169.1 20 23 2.3e-10 3.2e-07 30.5 0.1 2 25 773 796 773 797 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF473-205 - 871 1.8e-103 334.8 169.1 21 23 2.8e-11 3.9e-08 33.4 0.1 1 25 800 824 800 824 0.97 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF473-205 - 871 1.8e-103 334.8 169.1 22 23 2.6e-08 3.6e-05 24.0 2.8 1 25 828 852 828 853 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF473-205 - 871 1.8e-103 334.8 169.1 23 23 0.02 27 5.4 0.2 1 12 856 867 856 870 0.85 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZNF473-205 - 871 7.3e-76 246.6 175.6 1 21 3.5e-07 0.00048 20.4 0.6 1 23 209 231 209 231 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF473-205 - 871 7.3e-76 246.6 175.6 2 21 6.6 9e+03 -2.5 0.0 5 16 241 252 240 254 0.85 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF473-205 - 871 7.3e-76 246.6 175.6 3 21 0.1 1.4e+02 3.2 0.2 7 23 271 286 265 286 0.81 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF473-205 - 871 7.3e-76 246.6 175.6 4 21 4.1e-08 5.6e-05 23.4 2.2 1 23 320 342 320 342 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF473-205 - 871 7.3e-76 246.6 175.6 5 21 4.8e-05 0.066 13.7 3.1 1 23 347 369 347 369 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF473-205 - 871 7.3e-76 246.6 175.6 6 21 1e-06 0.0014 19.0 0.4 2 23 376 397 375 397 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF473-205 - 871 7.3e-76 246.6 175.6 7 21 6.5e-05 0.089 13.3 1.5 2 23 404 425 403 425 0.85 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF473-205 - 871 7.3e-76 246.6 175.6 8 21 4.6e-06 0.0064 16.9 6.7 1 23 431 453 431 453 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF473-205 - 871 7.3e-76 246.6 175.6 9 21 1.2e-07 0.00016 21.9 3.6 1 23 459 481 459 481 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF473-205 - 871 7.3e-76 246.6 175.6 10 21 1.1e-05 0.015 15.7 0.7 1 23 487 509 487 509 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF473-205 - 871 7.3e-76 246.6 175.6 11 21 0.25 3.5e+02 2.0 2.6 1 11 515 525 515 537 0.82 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF473-205 - 871 7.3e-76 246.6 175.6 12 21 0.00047 0.64 10.6 5.2 1 23 562 584 562 584 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF473-205 - 871 7.3e-76 246.6 175.6 13 21 2e-06 0.0028 18.0 0.7 1 23 591 613 591 613 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF473-205 - 871 7.3e-76 246.6 175.6 14 21 5.6e-08 7.7e-05 22.9 3.9 1 23 646 668 646 668 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF473-205 - 871 7.3e-76 246.6 175.6 15 21 2.9e-07 0.0004 20.7 2.2 1 23 674 696 674 696 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF473-205 - 871 7.3e-76 246.6 175.6 16 21 4.7e-08 6.5e-05 23.2 2.6 2 23 703 724 702 724 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF473-205 - 871 7.3e-76 246.6 175.6 17 21 1.4e-07 0.00019 21.7 0.1 1 23 730 752 730 752 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF473-205 - 871 7.3e-76 246.6 175.6 18 21 8.3e-08 0.00011 22.4 1.5 1 23 758 780 758 780 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF473-205 - 871 7.3e-76 246.6 175.6 19 21 2.8e-09 3.8e-06 27.0 0.1 1 23 786 808 786 808 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF473-205 - 871 7.3e-76 246.6 175.6 20 21 3e-07 0.00042 20.6 0.5 1 23 814 836 814 836 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF473-205 - 871 7.3e-76 246.6 175.6 21 21 0.0005 0.68 10.5 7.0 1 23 842 864 842 864 0.99 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZNF473-205 - 871 8.7e-44 144.4 163.7 1 20 3.4e-07 0.00047 20.8 0.7 1 23 209 231 209 232 0.97 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF473-205 - 871 8.7e-44 144.4 163.7 2 20 8.7 1.2e+04 -2.3 0.1 7 23 271 286 266 287 0.63 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF473-205 - 871 8.7e-44 144.4 163.7 3 20 6.2e-05 0.086 13.7 1.3 1 23 320 342 320 343 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF473-205 - 871 8.7e-44 144.4 163.7 4 20 3.8e-05 0.052 14.4 1.8 1 23 347 369 347 370 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF473-205 - 871 8.7e-44 144.4 163.7 5 20 0.0056 7.8 7.6 0.4 2 23 376 397 375 398 0.83 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF473-205 - 871 8.7e-44 144.4 163.7 6 20 0.67 9.3e+02 1.2 0.8 7 23 409 425 403 426 0.79 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF473-205 - 871 8.7e-44 144.4 163.7 7 20 0.00036 0.5 11.3 4.9 1 23 431 453 431 454 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF473-205 - 871 8.7e-44 144.4 163.7 8 20 0.00015 0.2 12.6 3.0 1 23 459 481 459 482 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF473-205 - 871 8.7e-44 144.4 163.7 9 20 3.9e-05 0.054 14.4 0.6 1 23 487 509 487 510 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF473-205 - 871 8.7e-44 144.4 163.7 10 20 0.0017 2.4 9.3 2.2 1 23 515 537 515 538 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF473-205 - 871 8.7e-44 144.4 163.7 11 20 5.8e-05 0.08 13.8 4.4 1 23 562 584 562 585 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF473-205 - 871 8.7e-44 144.4 163.7 12 20 1.9e-05 0.026 15.4 0.6 1 23 591 613 591 614 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF473-205 - 871 8.7e-44 144.4 163.7 13 20 3.8e-05 0.052 14.4 2.7 1 23 646 668 646 669 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF473-205 - 871 8.7e-44 144.4 163.7 14 20 1.1e-05 0.015 16.1 1.2 1 23 674 696 674 697 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF473-205 - 871 8.7e-44 144.4 163.7 15 20 7.6e-05 0.1 13.5 2.5 2 23 703 724 702 725 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF473-205 - 871 8.7e-44 144.4 163.7 16 20 5e-05 0.07 14.0 0.1 1 23 730 752 730 753 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF473-205 - 871 8.7e-44 144.4 163.7 17 20 0.00025 0.34 11.9 1.7 1 23 758 780 758 781 0.91 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF473-205 - 871 8.7e-44 144.4 163.7 18 20 6.4e-05 0.088 13.7 0.1 1 23 786 808 786 809 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF473-205 - 871 8.7e-44 144.4 163.7 19 20 6.3e-05 0.087 13.7 0.7 1 23 814 836 814 837 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF473-205 - 871 8.7e-44 144.4 163.7 20 20 0.00021 0.29 12.1 5.9 1 23 842 864 842 865 0.96 C2H2-type zinc finger Zn-ribbon_8 PF09723.10 40 ZNF473-205 - 871 2.3e-09 37.2 105.7 1 15 0.0026 3.6 7.8 0.5 6 34 209 244 208 249 0.70 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF473-205 - 871 2.3e-09 37.2 105.7 2 15 3.9 5.4e+03 -2.4 0.1 6 17 265 280 265 294 0.65 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF473-205 - 871 2.3e-09 37.2 105.7 3 15 0.0029 3.9 7.7 0.2 6 19 320 333 319 345 0.79 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF473-205 - 871 2.3e-09 37.2 105.7 4 15 6.9e-05 0.095 12.8 2.8 6 34 347 382 344 386 0.87 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF473-205 - 871 2.3e-09 37.2 105.7 5 15 0.00084 1.2 9.4 1.3 6 38 403 442 402 444 0.85 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF473-205 - 871 2.3e-09 37.2 105.7 6 15 0.0046 6.4 7.0 3.9 6 32 431 464 429 471 0.78 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF473-205 - 871 2.3e-09 37.2 105.7 7 15 0.031 42 4.4 4.0 7 34 460 494 455 499 0.88 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF473-205 - 871 2.3e-09 37.2 105.7 8 15 0.017 23 5.2 1.5 6 15 515 524 514 525 0.94 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF473-205 - 871 2.3e-09 37.2 105.7 9 15 0.52 7.1e+02 0.4 7.7 6 34 562 598 561 607 0.80 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF473-205 - 871 2.3e-09 37.2 105.7 10 15 0.0027 3.8 7.7 0.1 6 20 646 660 644 672 0.81 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF473-205 - 871 2.3e-09 37.2 105.7 11 15 0.0002 0.28 11.3 2.1 6 37 674 712 673 715 0.77 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF473-205 - 871 2.3e-09 37.2 105.7 12 15 0.00044 0.6 10.3 1.2 7 34 703 737 702 742 0.91 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF473-205 - 871 2.3e-09 37.2 105.7 13 15 0.00014 0.2 11.8 1.0 6 36 730 767 729 771 0.89 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF473-205 - 871 2.3e-09 37.2 105.7 14 15 3.2e-05 0.044 13.9 1.4 6 34 786 821 785 824 0.93 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF473-205 - 871 2.3e-09 37.2 105.7 15 15 0.15 2.1e+02 2.1 2.7 6 16 842 852 841 870 0.73 Zinc ribbon domain zf-C2H2_6 PF13912.6 27 ZNF473-205 - 871 1.8e-08 34.2 147.7 1 20 0.00017 0.24 11.5 0.9 2 24 209 231 209 234 0.79 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF473-205 - 871 1.8e-08 34.2 147.7 2 20 6.7 9.3e+03 -3.2 0.2 18 24 308 314 308 316 0.86 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF473-205 - 871 1.8e-08 34.2 147.7 3 20 0.00052 0.71 9.9 1.4 2 24 320 342 319 345 0.82 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF473-205 - 871 1.8e-08 34.2 147.7 4 20 0.00043 0.59 10.2 2.6 1 24 346 369 346 372 0.76 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF473-205 - 871 1.8e-08 34.2 147.7 5 20 0.025 34 4.6 0.1 3 12 376 385 376 395 0.90 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF473-205 - 871 1.8e-08 34.2 147.7 6 20 4.6 6.4e+03 -2.7 0.1 2 12 403 413 403 413 0.84 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF473-205 - 871 1.8e-08 34.2 147.7 7 20 3.4e-05 0.047 13.7 5.2 2 24 431 453 431 454 0.95 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF473-205 - 871 1.8e-08 34.2 147.7 8 20 0.0054 7.5 6.7 0.5 2 13 459 470 459 483 0.82 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF473-205 - 871 1.8e-08 34.2 147.7 9 20 0.046 64 3.7 0.3 2 12 487 497 487 507 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF473-205 - 871 1.8e-08 34.2 147.7 10 20 0.0034 4.7 7.3 0.7 2 11 515 524 515 524 0.97 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF473-205 - 871 1.8e-08 34.2 147.7 11 20 0.37 5.1e+02 0.8 5.9 2 12 562 572 561 584 0.86 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF473-205 - 871 1.8e-08 34.2 147.7 12 20 0.00045 0.62 10.1 0.5 2 22 591 611 591 616 0.77 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF473-205 - 871 1.8e-08 34.2 147.7 13 20 0.002 2.8 8.0 2.2 2 12 646 656 646 657 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF473-205 - 871 1.8e-08 34.2 147.7 14 20 0.0092 13 6.0 0.8 2 12 674 684 674 699 0.76 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF473-205 - 871 1.8e-08 34.2 147.7 15 20 0.013 19 5.4 1.7 4 12 704 712 703 720 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF473-205 - 871 1.8e-08 34.2 147.7 16 20 0.0017 2.4 8.3 0.1 2 11 730 739 730 741 0.92 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF473-205 - 871 1.8e-08 34.2 147.7 17 20 0.003 4.1 7.5 0.4 2 11 758 767 758 769 0.92 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF473-205 - 871 1.8e-08 34.2 147.7 18 20 0.015 21 5.3 0.3 2 20 786 804 786 810 0.79 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF473-205 - 871 1.8e-08 34.2 147.7 19 20 0.01 14 5.8 0.5 2 13 814 825 814 839 0.71 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF473-205 - 871 1.8e-08 34.2 147.7 20 20 1.5 2e+03 -1.1 3.3 2 12 842 852 841 867 0.78 C2H2-type zinc finger KRAB PF01352.27 42 ZNF473-205 - 871 2.1e-08 33.7 0.2 1 1 3.1e-11 4.3e-08 32.7 0.2 2 42 6 46 5 46 0.98 KRAB box XPA_N PF01286.18 32 ZNF473-205 - 871 5.3e-08 32.8 91.7 1 18 0.0011 1.5 8.9 0.2 3 15 210 222 208 227 0.89 XPA protein N-terminal XPA_N PF01286.18 32 ZNF473-205 - 871 5.3e-08 32.8 91.7 2 18 0.013 18 5.5 0.1 3 12 321 330 320 336 0.90 XPA protein N-terminal XPA_N PF01286.18 32 ZNF473-205 - 871 5.3e-08 32.8 91.7 3 18 0.61 8.5e+02 0.1 0.2 3 11 348 356 346 358 0.86 XPA protein N-terminal XPA_N PF01286.18 32 ZNF473-205 - 871 5.3e-08 32.8 91.7 4 18 0.00026 0.36 10.9 0.1 3 17 376 390 374 393 0.89 XPA protein N-terminal XPA_N PF01286.18 32 ZNF473-205 - 871 5.3e-08 32.8 91.7 5 18 0.012 16 5.6 0.1 3 12 432 441 430 443 0.90 XPA protein N-terminal XPA_N PF01286.18 32 ZNF473-205 - 871 5.3e-08 32.8 91.7 6 18 0.15 2.1e+02 2.1 0.1 3 12 460 469 458 477 0.81 XPA protein N-terminal XPA_N PF01286.18 32 ZNF473-205 - 871 5.3e-08 32.8 91.7 7 18 0.11 1.5e+02 2.5 0.3 4 13 489 498 486 499 0.89 XPA protein N-terminal XPA_N PF01286.18 32 ZNF473-205 - 871 5.3e-08 32.8 91.7 8 18 0.098 1.4e+02 2.7 1.4 3 11 516 524 514 527 0.90 XPA protein N-terminal XPA_N PF01286.18 32 ZNF473-205 - 871 5.3e-08 32.8 91.7 9 18 0.051 70 3.6 5.5 3 18 563 578 561 581 0.91 XPA protein N-terminal XPA_N PF01286.18 32 ZNF473-205 - 871 5.3e-08 32.8 91.7 10 18 0.0028 3.9 7.6 0.2 3 14 592 603 590 605 0.93 XPA protein N-terminal XPA_N PF01286.18 32 ZNF473-205 - 871 5.3e-08 32.8 91.7 11 18 0.0025 3.5 7.8 0.2 3 14 647 658 645 664 0.87 XPA protein N-terminal XPA_N PF01286.18 32 ZNF473-205 - 871 5.3e-08 32.8 91.7 12 18 0.71 9.8e+02 -0.1 0.1 3 12 675 684 673 690 0.80 XPA protein N-terminal XPA_N PF01286.18 32 ZNF473-205 - 871 5.3e-08 32.8 91.7 13 18 0.0029 4 7.6 0.7 3 14 703 714 701 720 0.85 XPA protein N-terminal XPA_N PF01286.18 32 ZNF473-205 - 871 5.3e-08 32.8 91.7 14 18 0.047 65 3.7 0.0 3 14 731 742 729 743 0.86 XPA protein N-terminal XPA_N PF01286.18 32 ZNF473-205 - 871 5.3e-08 32.8 91.7 15 18 0.0017 2.3 8.3 0.8 3 14 759 770 757 774 0.91 XPA protein N-terminal XPA_N PF01286.18 32 ZNF473-205 - 871 5.3e-08 32.8 91.7 16 18 0.034 47 4.1 0.1 3 12 787 796 785 798 0.88 XPA protein N-terminal XPA_N PF01286.18 32 ZNF473-205 - 871 5.3e-08 32.8 91.7 17 18 0.36 5e+02 0.9 0.0 4 14 816 826 813 831 0.80 XPA protein N-terminal XPA_N PF01286.18 32 ZNF473-205 - 871 5.3e-08 32.8 91.7 18 18 0.23 3.2e+02 1.5 0.6 3 11 843 851 842 860 0.84 XPA protein N-terminal # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF473-205.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF473-205.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF473-205.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF473-205.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF473-205.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:07:07 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF473-206.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF473-206.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF473-206.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF473-206.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF473-206.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:07:07 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF473-207.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF473-207.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF473-207.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF473-207.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF473-207.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:07:07 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF473-208.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF473-208.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF473-208.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF473-208.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF473-208.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:07:08 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- KRAB PF01352.27 42 ZNF473-209 - 77 6.3e-10 38.5 0.2 1 1 4.3e-14 7.7e-10 38.3 0.2 2 42 6 46 5 46 0.98 KRAB box # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF473-209.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF473-209.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF473-209.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF473-209.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF473-209.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:07:08 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZNF479-201 - 524 6.1e-93 301.5 95.1 1 13 0.34 2.4e+02 2.4 0.6 10 24 180 194 177 194 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF479-201 - 524 6.1e-93 301.5 95.1 2 13 2.6e-07 0.00018 21.8 4.5 1 25 199 223 199 224 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF479-201 - 524 6.1e-93 301.5 95.1 3 13 8.3e-09 5.7e-06 26.5 2.6 5 25 231 251 228 251 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF479-201 - 524 6.1e-93 301.5 95.1 4 13 4.7e-12 3.2e-09 36.8 1.2 1 25 255 279 255 280 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF479-201 - 524 6.1e-93 301.5 95.1 5 13 2.3e-11 1.6e-08 34.6 0.5 1 25 283 307 283 307 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF479-201 - 524 6.1e-93 301.5 95.1 6 13 3e-08 2e-05 24.8 1.7 2 25 312 335 311 335 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF479-201 - 524 6.1e-93 301.5 95.1 7 13 2.6e-10 1.8e-07 31.3 0.5 1 25 339 363 339 363 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF479-201 - 524 6.1e-93 301.5 95.1 8 13 1.4e-11 9.6e-09 35.3 0.4 1 24 367 390 367 392 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF479-201 - 524 6.1e-93 301.5 95.1 9 13 1.9e-10 1.3e-07 31.7 0.4 1 25 395 419 395 419 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF479-201 - 524 6.1e-93 301.5 95.1 10 13 9.2e-11 6.3e-08 32.7 0.7 2 25 424 447 423 447 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF479-201 - 524 6.1e-93 301.5 95.1 11 13 1.1e-10 7.5e-08 32.5 1.5 2 25 452 475 451 476 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF479-201 - 524 6.1e-93 301.5 95.1 12 13 1.4e-10 9.3e-08 32.2 1.1 2 25 480 503 479 503 0.97 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF479-201 - 524 6.1e-93 301.5 95.1 13 13 2e-06 0.0014 19.0 0.2 2 18 508 524 507 524 0.92 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZNF479-201 - 524 3.6e-51 168.8 93.9 1 12 0.042 29 5.4 3.8 6 23 187 207 184 207 0.80 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF479-201 - 524 3.6e-51 168.8 93.9 2 12 0.0036 2.5 8.7 5.4 1 23 213 235 213 235 0.87 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF479-201 - 524 3.6e-51 168.8 93.9 3 12 1.4e-07 9.4e-05 22.7 0.6 1 23 241 263 241 263 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF479-201 - 524 3.6e-51 168.8 93.9 4 12 1.6e-08 1.1e-05 25.6 0.4 1 23 269 291 269 291 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF479-201 - 524 3.6e-51 168.8 93.9 5 12 6.8e-08 4.7e-05 23.6 0.4 1 23 297 319 297 319 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF479-201 - 524 3.6e-51 168.8 93.9 6 12 1e-06 0.00072 19.9 1.9 2 23 326 347 325 347 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF479-201 - 524 3.6e-51 168.8 93.9 7 12 1e-07 7.2e-05 23.0 0.2 1 23 353 375 353 375 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF479-201 - 524 3.6e-51 168.8 93.9 8 12 7.8e-08 5.4e-05 23.4 0.3 1 23 381 403 381 403 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF479-201 - 524 3.6e-51 168.8 93.9 9 12 1.1e-07 7.3e-05 23.0 0.6 1 23 409 431 409 431 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF479-201 - 524 3.6e-51 168.8 93.9 10 12 1.8e-07 0.00012 22.3 0.5 1 23 437 459 437 459 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF479-201 - 524 3.6e-51 168.8 93.9 11 12 5e-06 0.0035 17.7 2.1 1 23 465 487 465 487 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF479-201 - 524 3.6e-51 168.8 93.9 12 12 0.0002 0.14 12.7 0.6 1 23 493 515 493 515 0.97 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZNF479-201 - 524 1.5e-30 103.2 85.2 1 12 3.2 2.2e+03 -0.0 2.4 7 23 191 207 184 208 0.77 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF479-201 - 524 1.5e-30 103.2 85.2 2 12 0.00062 0.43 11.6 4.3 1 23 213 235 213 236 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF479-201 - 524 1.5e-30 103.2 85.2 3 12 3.2e-05 0.022 15.5 0.6 1 23 241 263 241 264 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF479-201 - 524 1.5e-30 103.2 85.2 4 12 1.9e-05 0.013 16.3 0.3 1 23 269 291 269 292 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF479-201 - 524 1.5e-30 103.2 85.2 5 12 2.3e-05 0.016 16.0 0.4 1 23 297 319 297 320 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF479-201 - 524 1.5e-30 103.2 85.2 6 12 0.00095 0.65 11.0 1.9 2 23 326 347 325 348 0.89 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF479-201 - 524 1.5e-30 103.2 85.2 7 12 3.6e-05 0.025 15.4 0.2 1 23 353 375 353 376 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF479-201 - 524 1.5e-30 103.2 85.2 8 12 8.1e-05 0.056 14.3 0.3 1 23 381 403 381 404 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF479-201 - 524 1.5e-30 103.2 85.2 9 12 1.2e-05 0.0081 16.9 0.6 1 23 409 431 409 432 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF479-201 - 524 1.5e-30 103.2 85.2 10 12 3.2e-05 0.022 15.5 0.5 1 23 437 459 437 460 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF479-201 - 524 1.5e-30 103.2 85.2 11 12 1.4e-05 0.0093 16.7 1.7 1 23 465 487 465 488 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF479-201 - 524 1.5e-30 103.2 85.2 12 12 0.016 11 7.2 1.1 1 23 493 515 493 516 0.83 C2H2-type zinc finger KRAB PF01352.27 42 ZNF479-201 - 524 2.1e-24 84.9 0.1 1 1 6.2e-27 4.3e-24 83.9 0.1 2 42 16 56 15 56 0.98 KRAB box zf_UBZ PF18439.1 32 ZNF479-201 - 524 4e-13 48.7 55.5 1 12 5.6 3.8e+03 -2.4 0.3 2 10 29 37 28 38 0.79 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF479-201 - 524 4e-13 48.7 55.5 2 12 0.0033 2.3 7.9 1.7 2 20 212 231 211 232 0.80 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF479-201 - 524 4e-13 48.7 55.5 3 12 0.0069 4.8 6.9 0.1 3 13 241 251 239 260 0.81 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF479-201 - 524 4e-13 48.7 55.5 4 12 0.003 2 8.0 0.1 3 16 269 283 267 288 0.76 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF479-201 - 524 4e-13 48.7 55.5 5 12 0.00084 0.58 9.8 0.1 3 20 297 315 295 316 0.82 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF479-201 - 524 4e-13 48.7 55.5 6 12 0.064 44 3.8 0.6 5 13 327 335 325 344 0.80 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF479-201 - 524 4e-13 48.7 55.5 7 12 0.0035 2.4 7.8 0.1 3 16 353 367 351 372 0.80 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF479-201 - 524 4e-13 48.7 55.5 8 12 0.0077 5.3 6.7 0.1 3 12 381 390 379 399 0.83 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF479-201 - 524 4e-13 48.7 55.5 9 12 0.00092 0.64 9.7 0.1 3 18 409 425 407 428 0.80 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF479-201 - 524 4e-13 48.7 55.5 10 12 0.0015 1.1 9.0 0.1 3 18 437 453 435 456 0.80 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF479-201 - 524 4e-13 48.7 55.5 11 12 0.00083 0.57 9.8 0.6 3 20 465 483 463 484 0.87 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF479-201 - 524 4e-13 48.7 55.5 12 12 0.058 40 3.9 0.4 3 15 493 505 491 512 0.76 Ubiquitin-Binding Zinc Finger zf-C2H2_11 PF16622.5 29 ZNF479-201 - 524 1.2e-12 47.3 53.8 1 12 2 1.4e+03 -0.8 0.8 6 10 31 35 30 37 0.90 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF479-201 - 524 1.2e-12 47.3 53.8 2 12 0.081 56 3.6 1.5 3 14 211 222 210 227 0.85 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF479-201 - 524 1.2e-12 47.3 53.8 3 12 0.00037 0.25 11.1 0.0 5 24 241 260 238 262 0.92 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF479-201 - 524 1.2e-12 47.3 53.8 4 12 0.13 89 3.0 0.1 7 26 271 290 268 291 0.88 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF479-201 - 524 1.2e-12 47.3 53.8 5 12 0.0034 2.4 8.0 0.1 5 26 297 318 295 319 0.91 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF479-201 - 524 1.2e-12 47.3 53.8 6 12 2.3e-05 0.016 15.0 0.3 5 26 325 346 322 347 0.94 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF479-201 - 524 1.2e-12 47.3 53.8 7 12 0.0001 0.071 12.9 0.3 7 26 355 374 352 375 0.95 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF479-201 - 524 1.2e-12 47.3 53.8 8 12 0.45 3.1e+02 1.2 0.1 7 26 383 402 380 403 0.77 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF479-201 - 524 1.2e-12 47.3 53.8 9 12 0.011 7.5 6.4 0.1 5 26 409 430 407 431 0.89 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF479-201 - 524 1.2e-12 47.3 53.8 10 12 0.0066 4.6 7.1 0.1 5 26 437 458 435 459 0.90 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF479-201 - 524 1.2e-12 47.3 53.8 11 12 0.064 44 3.9 0.7 7 26 467 486 464 487 0.90 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF479-201 - 524 1.2e-12 47.3 53.8 12 12 0.019 13 5.6 0.0 5 26 493 514 490 515 0.91 zinc-finger C2H2-type XPA_N PF01286.18 32 ZNF479-201 - 524 6.8e-12 45.2 59.8 1 12 7.6 5.3e+03 -2.4 0.4 4 9 32 37 31 38 0.82 XPA protein N-terminal XPA_N PF01286.18 32 ZNF479-201 - 524 6.8e-12 45.2 59.8 2 12 0.061 42 4.3 2.7 3 14 214 225 213 226 0.86 XPA protein N-terminal XPA_N PF01286.18 32 ZNF479-201 - 524 6.8e-12 45.2 59.8 3 12 0.0048 3.3 7.8 0.1 3 14 242 253 240 256 0.87 XPA protein N-terminal XPA_N PF01286.18 32 ZNF479-201 - 524 6.8e-12 45.2 59.8 4 12 0.0031 2.2 8.4 0.1 3 14 270 281 268 287 0.85 XPA protein N-terminal XPA_N PF01286.18 32 ZNF479-201 - 524 6.8e-12 45.2 59.8 5 12 0.0013 0.92 9.6 0.2 3 14 298 309 296 314 0.89 XPA protein N-terminal XPA_N PF01286.18 32 ZNF479-201 - 524 6.8e-12 45.2 59.8 6 12 0.0084 5.8 7.0 0.8 3 14 326 337 324 341 0.87 XPA protein N-terminal XPA_N PF01286.18 32 ZNF479-201 - 524 6.8e-12 45.2 59.8 7 12 0.0083 5.8 7.1 0.1 4 14 355 365 352 371 0.83 XPA protein N-terminal XPA_N PF01286.18 32 ZNF479-201 - 524 6.8e-12 45.2 59.8 8 12 0.009 6.2 7.0 0.1 3 14 382 393 380 397 0.89 XPA protein N-terminal XPA_N PF01286.18 32 ZNF479-201 - 524 6.8e-12 45.2 59.8 9 12 0.0071 4.9 7.3 0.2 3 14 410 421 408 427 0.84 XPA protein N-terminal XPA_N PF01286.18 32 ZNF479-201 - 524 6.8e-12 45.2 59.8 10 12 0.0016 1.1 9.3 0.2 3 14 438 449 436 455 0.85 XPA protein N-terminal XPA_N PF01286.18 32 ZNF479-201 - 524 6.8e-12 45.2 59.8 11 12 0.0029 2 8.5 0.7 3 14 466 477 464 483 0.75 XPA protein N-terminal XPA_N PF01286.18 32 ZNF479-201 - 524 6.8e-12 45.2 59.8 12 12 0.026 18 5.5 0.3 3 12 494 503 492 507 0.90 XPA protein N-terminal Zn-ribbon_8 PF09723.10 40 ZNF479-201 - 524 7.5e-11 42.0 76.2 1 9 7.2 5e+03 -2.3 0.1 7 13 31 37 26 43 0.66 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF479-201 - 524 7.5e-11 42.0 76.2 2 9 0.0029 2 8.6 0.6 6 16 213 223 212 236 0.85 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF479-201 - 524 7.5e-11 42.0 76.2 3 9 1.6e-06 0.0011 19.1 2.5 6 38 241 280 240 281 0.85 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF479-201 - 524 7.5e-11 42.0 76.2 4 9 0.00036 0.25 11.5 6.8 6 34 297 332 296 335 0.74 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF479-201 - 524 7.5e-11 42.0 76.2 5 9 2.6e-06 0.0018 18.4 2.2 6 38 353 392 351 393 0.90 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF479-201 - 524 7.5e-11 42.0 76.2 6 9 0.0008 0.55 10.4 0.1 6 19 409 422 408 434 0.81 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF479-201 - 524 7.5e-11 42.0 76.2 7 9 0.0004 0.28 11.3 5.1 6 34 437 472 436 474 0.77 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF479-201 - 524 7.5e-11 42.0 76.2 8 9 0.033 23 5.2 9.4 6 34 465 500 464 503 0.82 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF479-201 - 524 7.5e-11 42.0 76.2 9 9 0.063 44 4.3 1.3 6 16 493 503 492 523 0.77 Zinc ribbon domain zf-C2H2_6 PF13912.6 27 ZNF479-201 - 524 5.4e-10 39.0 81.1 1 11 0.00052 0.36 10.9 2.7 2 12 213 223 212 235 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF479-201 - 524 5.4e-10 39.0 81.1 2 11 2.9e-05 0.02 14.9 0.7 2 24 241 263 241 266 0.95 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF479-201 - 524 5.4e-10 39.0 81.1 3 11 0.00063 0.44 10.6 0.4 2 24 269 291 269 294 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF479-201 - 524 5.4e-10 39.0 81.1 4 11 0.0043 2.9 8.0 0.5 2 21 297 316 297 321 0.77 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF479-201 - 524 5.4e-10 39.0 81.1 5 11 0.0029 2 8.5 0.5 3 24 326 347 326 350 0.90 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF479-201 - 524 5.4e-10 39.0 81.1 6 11 0.033 23 5.2 0.2 2 24 353 375 353 378 0.90 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF479-201 - 524 5.4e-10 39.0 81.1 7 11 0.0056 3.9 7.6 0.2 2 24 381 403 381 406 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF479-201 - 524 5.4e-10 39.0 81.1 8 11 0.0011 0.74 9.9 0.5 2 20 409 427 409 433 0.75 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF479-201 - 524 5.4e-10 39.0 81.1 9 11 0.0048 3.3 7.8 0.5 2 14 437 449 437 461 0.75 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF479-201 - 524 5.4e-10 39.0 81.1 10 11 0.014 9.9 6.3 1.9 2 24 465 487 465 490 0.86 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF479-201 - 524 5.4e-10 39.0 81.1 11 11 0.13 92 3.2 1.3 2 24 493 515 493 518 0.87 C2H2-type zinc finger zf-C2H2_jaz PF12171.8 27 ZNF479-201 - 524 1.5e-09 37.9 40.2 1 11 0.094 65 4.0 3.5 2 20 213 231 212 232 0.84 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF479-201 - 524 1.5e-09 37.9 40.2 2 11 0.0056 3.9 7.9 0.1 2 24 241 263 240 263 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF479-201 - 524 1.5e-09 37.9 40.2 3 11 0.032 22 5.5 0.0 2 22 269 289 268 289 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF479-201 - 524 1.5e-09 37.9 40.2 4 11 0.006 4.1 7.8 0.0 2 22 297 317 296 317 0.91 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF479-201 - 524 1.5e-09 37.9 40.2 5 11 0.075 51 4.3 0.1 4 22 327 345 326 345 0.90 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF479-201 - 524 1.5e-09 37.9 40.2 6 11 8.7 6e+03 -2.3 0.0 2 8 353 359 352 372 0.73 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF479-201 - 524 1.5e-09 37.9 40.2 7 11 0.48 3.3e+02 1.7 0.0 2 21 381 400 380 401 0.87 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF479-201 - 524 1.5e-09 37.9 40.2 8 11 0.0034 2.3 8.6 0.0 2 22 409 429 408 429 0.91 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF479-201 - 524 1.5e-09 37.9 40.2 9 11 0.0078 5.4 7.4 0.0 2 22 437 457 436 457 0.91 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF479-201 - 524 1.5e-09 37.9 40.2 10 11 0.003 2.1 8.7 0.4 2 22 465 485 464 485 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF479-201 - 524 1.5e-09 37.9 40.2 11 11 1.1 7.8e+02 0.5 1.1 2 20 493 511 492 512 0.81 Zinc-finger double-stranded RNA-binding zf-trcl PF13451.6 48 ZNF479-201 - 524 1.9e-07 30.9 47.7 1 12 4.3 2.9e+03 -1.8 0.1 5 13 30 38 28 42 0.73 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF479-201 - 524 1.9e-07 30.9 47.7 2 12 0.022 15 5.5 0.9 3 14 211 222 209 227 0.87 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF479-201 - 524 1.9e-07 30.9 47.7 3 12 0.0017 1.2 9.1 0.0 3 18 239 254 237 258 0.91 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF479-201 - 524 1.9e-07 30.9 47.7 4 12 0.024 16 5.4 0.1 3 14 267 278 265 281 0.90 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF479-201 - 524 1.9e-07 30.9 47.7 5 12 0.09 62 3.6 0.1 4 14 296 306 294 310 0.84 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF479-201 - 524 1.9e-07 30.9 47.7 6 12 0.012 8.6 6.4 0.3 3 18 323 338 321 340 0.85 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF479-201 - 524 1.9e-07 30.9 47.7 7 12 0.052 36 4.4 0.0 2 14 350 362 349 366 0.86 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF479-201 - 524 1.9e-07 30.9 47.7 8 12 0.012 8.5 6.4 0.2 3 14 379 390 377 392 0.91 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF479-201 - 524 1.9e-07 30.9 47.7 9 12 0.15 1e+02 2.9 0.1 4 14 408 418 406 422 0.82 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF479-201 - 524 1.9e-07 30.9 47.7 10 12 0.083 57 3.7 0.1 4 14 436 446 434 450 0.83 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF479-201 - 524 1.9e-07 30.9 47.7 11 12 0.075 52 3.9 0.6 3 14 463 474 462 478 0.87 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF479-201 - 524 1.9e-07 30.9 47.7 12 12 0.016 11 6.0 0.1 3 17 491 505 489 511 0.85 Probable zinc-ribbon domain # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF479-201.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF479-201.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF479-201.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF479-201.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF479-201.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:07:08 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZNF479-202 - 524 6.1e-93 301.5 95.1 1 13 0.34 2.4e+02 2.4 0.6 10 24 180 194 177 194 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF479-202 - 524 6.1e-93 301.5 95.1 2 13 2.6e-07 0.00018 21.8 4.5 1 25 199 223 199 224 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF479-202 - 524 6.1e-93 301.5 95.1 3 13 8.3e-09 5.7e-06 26.5 2.6 5 25 231 251 228 251 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF479-202 - 524 6.1e-93 301.5 95.1 4 13 4.7e-12 3.2e-09 36.8 1.2 1 25 255 279 255 280 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF479-202 - 524 6.1e-93 301.5 95.1 5 13 2.3e-11 1.6e-08 34.6 0.5 1 25 283 307 283 307 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF479-202 - 524 6.1e-93 301.5 95.1 6 13 3e-08 2e-05 24.8 1.7 2 25 312 335 311 335 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF479-202 - 524 6.1e-93 301.5 95.1 7 13 2.6e-10 1.8e-07 31.3 0.5 1 25 339 363 339 363 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF479-202 - 524 6.1e-93 301.5 95.1 8 13 1.4e-11 9.6e-09 35.3 0.4 1 24 367 390 367 392 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF479-202 - 524 6.1e-93 301.5 95.1 9 13 1.9e-10 1.3e-07 31.7 0.4 1 25 395 419 395 419 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF479-202 - 524 6.1e-93 301.5 95.1 10 13 9.2e-11 6.3e-08 32.7 0.7 2 25 424 447 423 447 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF479-202 - 524 6.1e-93 301.5 95.1 11 13 1.1e-10 7.5e-08 32.5 1.5 2 25 452 475 451 476 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF479-202 - 524 6.1e-93 301.5 95.1 12 13 1.4e-10 9.3e-08 32.2 1.1 2 25 480 503 479 503 0.97 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF479-202 - 524 6.1e-93 301.5 95.1 13 13 2e-06 0.0014 19.0 0.2 2 18 508 524 507 524 0.92 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZNF479-202 - 524 3.6e-51 168.8 93.9 1 12 0.042 29 5.4 3.8 6 23 187 207 184 207 0.80 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF479-202 - 524 3.6e-51 168.8 93.9 2 12 0.0036 2.5 8.7 5.4 1 23 213 235 213 235 0.87 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF479-202 - 524 3.6e-51 168.8 93.9 3 12 1.4e-07 9.4e-05 22.7 0.6 1 23 241 263 241 263 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF479-202 - 524 3.6e-51 168.8 93.9 4 12 1.6e-08 1.1e-05 25.6 0.4 1 23 269 291 269 291 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF479-202 - 524 3.6e-51 168.8 93.9 5 12 6.8e-08 4.7e-05 23.6 0.4 1 23 297 319 297 319 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF479-202 - 524 3.6e-51 168.8 93.9 6 12 1e-06 0.00072 19.9 1.9 2 23 326 347 325 347 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF479-202 - 524 3.6e-51 168.8 93.9 7 12 1e-07 7.2e-05 23.0 0.2 1 23 353 375 353 375 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF479-202 - 524 3.6e-51 168.8 93.9 8 12 7.8e-08 5.4e-05 23.4 0.3 1 23 381 403 381 403 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF479-202 - 524 3.6e-51 168.8 93.9 9 12 1.1e-07 7.3e-05 23.0 0.6 1 23 409 431 409 431 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF479-202 - 524 3.6e-51 168.8 93.9 10 12 1.8e-07 0.00012 22.3 0.5 1 23 437 459 437 459 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF479-202 - 524 3.6e-51 168.8 93.9 11 12 5e-06 0.0035 17.7 2.1 1 23 465 487 465 487 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF479-202 - 524 3.6e-51 168.8 93.9 12 12 0.0002 0.14 12.7 0.6 1 23 493 515 493 515 0.97 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZNF479-202 - 524 1.5e-30 103.2 85.2 1 12 3.2 2.2e+03 -0.0 2.4 7 23 191 207 184 208 0.77 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF479-202 - 524 1.5e-30 103.2 85.2 2 12 0.00062 0.43 11.6 4.3 1 23 213 235 213 236 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF479-202 - 524 1.5e-30 103.2 85.2 3 12 3.2e-05 0.022 15.5 0.6 1 23 241 263 241 264 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF479-202 - 524 1.5e-30 103.2 85.2 4 12 1.9e-05 0.013 16.3 0.3 1 23 269 291 269 292 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF479-202 - 524 1.5e-30 103.2 85.2 5 12 2.3e-05 0.016 16.0 0.4 1 23 297 319 297 320 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF479-202 - 524 1.5e-30 103.2 85.2 6 12 0.00095 0.65 11.0 1.9 2 23 326 347 325 348 0.89 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF479-202 - 524 1.5e-30 103.2 85.2 7 12 3.6e-05 0.025 15.4 0.2 1 23 353 375 353 376 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF479-202 - 524 1.5e-30 103.2 85.2 8 12 8.1e-05 0.056 14.3 0.3 1 23 381 403 381 404 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF479-202 - 524 1.5e-30 103.2 85.2 9 12 1.2e-05 0.0081 16.9 0.6 1 23 409 431 409 432 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF479-202 - 524 1.5e-30 103.2 85.2 10 12 3.2e-05 0.022 15.5 0.5 1 23 437 459 437 460 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF479-202 - 524 1.5e-30 103.2 85.2 11 12 1.4e-05 0.0093 16.7 1.7 1 23 465 487 465 488 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF479-202 - 524 1.5e-30 103.2 85.2 12 12 0.016 11 7.2 1.1 1 23 493 515 493 516 0.83 C2H2-type zinc finger KRAB PF01352.27 42 ZNF479-202 - 524 2.1e-24 84.9 0.1 1 1 6.2e-27 4.3e-24 83.9 0.1 2 42 16 56 15 56 0.98 KRAB box zf_UBZ PF18439.1 32 ZNF479-202 - 524 4e-13 48.7 55.5 1 12 5.6 3.8e+03 -2.4 0.3 2 10 29 37 28 38 0.79 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF479-202 - 524 4e-13 48.7 55.5 2 12 0.0033 2.3 7.9 1.7 2 20 212 231 211 232 0.80 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF479-202 - 524 4e-13 48.7 55.5 3 12 0.0069 4.8 6.9 0.1 3 13 241 251 239 260 0.81 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF479-202 - 524 4e-13 48.7 55.5 4 12 0.003 2 8.0 0.1 3 16 269 283 267 288 0.76 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF479-202 - 524 4e-13 48.7 55.5 5 12 0.00084 0.58 9.8 0.1 3 20 297 315 295 316 0.82 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF479-202 - 524 4e-13 48.7 55.5 6 12 0.064 44 3.8 0.6 5 13 327 335 325 344 0.80 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF479-202 - 524 4e-13 48.7 55.5 7 12 0.0035 2.4 7.8 0.1 3 16 353 367 351 372 0.80 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF479-202 - 524 4e-13 48.7 55.5 8 12 0.0077 5.3 6.7 0.1 3 12 381 390 379 399 0.83 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF479-202 - 524 4e-13 48.7 55.5 9 12 0.00092 0.64 9.7 0.1 3 18 409 425 407 428 0.80 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF479-202 - 524 4e-13 48.7 55.5 10 12 0.0015 1.1 9.0 0.1 3 18 437 453 435 456 0.80 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF479-202 - 524 4e-13 48.7 55.5 11 12 0.00083 0.57 9.8 0.6 3 20 465 483 463 484 0.87 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF479-202 - 524 4e-13 48.7 55.5 12 12 0.058 40 3.9 0.4 3 15 493 505 491 512 0.76 Ubiquitin-Binding Zinc Finger zf-C2H2_11 PF16622.5 29 ZNF479-202 - 524 1.2e-12 47.3 53.8 1 12 2 1.4e+03 -0.8 0.8 6 10 31 35 30 37 0.90 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF479-202 - 524 1.2e-12 47.3 53.8 2 12 0.081 56 3.6 1.5 3 14 211 222 210 227 0.85 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF479-202 - 524 1.2e-12 47.3 53.8 3 12 0.00037 0.25 11.1 0.0 5 24 241 260 238 262 0.92 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF479-202 - 524 1.2e-12 47.3 53.8 4 12 0.13 89 3.0 0.1 7 26 271 290 268 291 0.88 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF479-202 - 524 1.2e-12 47.3 53.8 5 12 0.0034 2.4 8.0 0.1 5 26 297 318 295 319 0.91 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF479-202 - 524 1.2e-12 47.3 53.8 6 12 2.3e-05 0.016 15.0 0.3 5 26 325 346 322 347 0.94 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF479-202 - 524 1.2e-12 47.3 53.8 7 12 0.0001 0.071 12.9 0.3 7 26 355 374 352 375 0.95 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF479-202 - 524 1.2e-12 47.3 53.8 8 12 0.45 3.1e+02 1.2 0.1 7 26 383 402 380 403 0.77 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF479-202 - 524 1.2e-12 47.3 53.8 9 12 0.011 7.5 6.4 0.1 5 26 409 430 407 431 0.89 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF479-202 - 524 1.2e-12 47.3 53.8 10 12 0.0066 4.6 7.1 0.1 5 26 437 458 435 459 0.90 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF479-202 - 524 1.2e-12 47.3 53.8 11 12 0.064 44 3.9 0.7 7 26 467 486 464 487 0.90 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF479-202 - 524 1.2e-12 47.3 53.8 12 12 0.019 13 5.6 0.0 5 26 493 514 490 515 0.91 zinc-finger C2H2-type XPA_N PF01286.18 32 ZNF479-202 - 524 6.8e-12 45.2 59.8 1 12 7.6 5.3e+03 -2.4 0.4 4 9 32 37 31 38 0.82 XPA protein N-terminal XPA_N PF01286.18 32 ZNF479-202 - 524 6.8e-12 45.2 59.8 2 12 0.061 42 4.3 2.7 3 14 214 225 213 226 0.86 XPA protein N-terminal XPA_N PF01286.18 32 ZNF479-202 - 524 6.8e-12 45.2 59.8 3 12 0.0048 3.3 7.8 0.1 3 14 242 253 240 256 0.87 XPA protein N-terminal XPA_N PF01286.18 32 ZNF479-202 - 524 6.8e-12 45.2 59.8 4 12 0.0031 2.2 8.4 0.1 3 14 270 281 268 287 0.85 XPA protein N-terminal XPA_N PF01286.18 32 ZNF479-202 - 524 6.8e-12 45.2 59.8 5 12 0.0013 0.92 9.6 0.2 3 14 298 309 296 314 0.89 XPA protein N-terminal XPA_N PF01286.18 32 ZNF479-202 - 524 6.8e-12 45.2 59.8 6 12 0.0084 5.8 7.0 0.8 3 14 326 337 324 341 0.87 XPA protein N-terminal XPA_N PF01286.18 32 ZNF479-202 - 524 6.8e-12 45.2 59.8 7 12 0.0083 5.8 7.1 0.1 4 14 355 365 352 371 0.83 XPA protein N-terminal XPA_N PF01286.18 32 ZNF479-202 - 524 6.8e-12 45.2 59.8 8 12 0.009 6.2 7.0 0.1 3 14 382 393 380 397 0.89 XPA protein N-terminal XPA_N PF01286.18 32 ZNF479-202 - 524 6.8e-12 45.2 59.8 9 12 0.0071 4.9 7.3 0.2 3 14 410 421 408 427 0.84 XPA protein N-terminal XPA_N PF01286.18 32 ZNF479-202 - 524 6.8e-12 45.2 59.8 10 12 0.0016 1.1 9.3 0.2 3 14 438 449 436 455 0.85 XPA protein N-terminal XPA_N PF01286.18 32 ZNF479-202 - 524 6.8e-12 45.2 59.8 11 12 0.0029 2 8.5 0.7 3 14 466 477 464 483 0.75 XPA protein N-terminal XPA_N PF01286.18 32 ZNF479-202 - 524 6.8e-12 45.2 59.8 12 12 0.026 18 5.5 0.3 3 12 494 503 492 507 0.90 XPA protein N-terminal Zn-ribbon_8 PF09723.10 40 ZNF479-202 - 524 7.5e-11 42.0 76.2 1 9 7.2 5e+03 -2.3 0.1 7 13 31 37 26 43 0.66 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF479-202 - 524 7.5e-11 42.0 76.2 2 9 0.0029 2 8.6 0.6 6 16 213 223 212 236 0.85 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF479-202 - 524 7.5e-11 42.0 76.2 3 9 1.6e-06 0.0011 19.1 2.5 6 38 241 280 240 281 0.85 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF479-202 - 524 7.5e-11 42.0 76.2 4 9 0.00036 0.25 11.5 6.8 6 34 297 332 296 335 0.74 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF479-202 - 524 7.5e-11 42.0 76.2 5 9 2.6e-06 0.0018 18.4 2.2 6 38 353 392 351 393 0.90 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF479-202 - 524 7.5e-11 42.0 76.2 6 9 0.0008 0.55 10.4 0.1 6 19 409 422 408 434 0.81 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF479-202 - 524 7.5e-11 42.0 76.2 7 9 0.0004 0.28 11.3 5.1 6 34 437 472 436 474 0.77 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF479-202 - 524 7.5e-11 42.0 76.2 8 9 0.033 23 5.2 9.4 6 34 465 500 464 503 0.82 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF479-202 - 524 7.5e-11 42.0 76.2 9 9 0.063 44 4.3 1.3 6 16 493 503 492 523 0.77 Zinc ribbon domain zf-C2H2_6 PF13912.6 27 ZNF479-202 - 524 5.4e-10 39.0 81.1 1 11 0.00052 0.36 10.9 2.7 2 12 213 223 212 235 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF479-202 - 524 5.4e-10 39.0 81.1 2 11 2.9e-05 0.02 14.9 0.7 2 24 241 263 241 266 0.95 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF479-202 - 524 5.4e-10 39.0 81.1 3 11 0.00063 0.44 10.6 0.4 2 24 269 291 269 294 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF479-202 - 524 5.4e-10 39.0 81.1 4 11 0.0043 2.9 8.0 0.5 2 21 297 316 297 321 0.77 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF479-202 - 524 5.4e-10 39.0 81.1 5 11 0.0029 2 8.5 0.5 3 24 326 347 326 350 0.90 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF479-202 - 524 5.4e-10 39.0 81.1 6 11 0.033 23 5.2 0.2 2 24 353 375 353 378 0.90 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF479-202 - 524 5.4e-10 39.0 81.1 7 11 0.0056 3.9 7.6 0.2 2 24 381 403 381 406 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF479-202 - 524 5.4e-10 39.0 81.1 8 11 0.0011 0.74 9.9 0.5 2 20 409 427 409 433 0.75 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF479-202 - 524 5.4e-10 39.0 81.1 9 11 0.0048 3.3 7.8 0.5 2 14 437 449 437 461 0.75 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF479-202 - 524 5.4e-10 39.0 81.1 10 11 0.014 9.9 6.3 1.9 2 24 465 487 465 490 0.86 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF479-202 - 524 5.4e-10 39.0 81.1 11 11 0.13 92 3.2 1.3 2 24 493 515 493 518 0.87 C2H2-type zinc finger zf-C2H2_jaz PF12171.8 27 ZNF479-202 - 524 1.5e-09 37.9 40.2 1 11 0.094 65 4.0 3.5 2 20 213 231 212 232 0.84 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF479-202 - 524 1.5e-09 37.9 40.2 2 11 0.0056 3.9 7.9 0.1 2 24 241 263 240 263 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF479-202 - 524 1.5e-09 37.9 40.2 3 11 0.032 22 5.5 0.0 2 22 269 289 268 289 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF479-202 - 524 1.5e-09 37.9 40.2 4 11 0.006 4.1 7.8 0.0 2 22 297 317 296 317 0.91 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF479-202 - 524 1.5e-09 37.9 40.2 5 11 0.075 51 4.3 0.1 4 22 327 345 326 345 0.90 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF479-202 - 524 1.5e-09 37.9 40.2 6 11 8.7 6e+03 -2.3 0.0 2 8 353 359 352 372 0.73 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF479-202 - 524 1.5e-09 37.9 40.2 7 11 0.48 3.3e+02 1.7 0.0 2 21 381 400 380 401 0.87 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF479-202 - 524 1.5e-09 37.9 40.2 8 11 0.0034 2.3 8.6 0.0 2 22 409 429 408 429 0.91 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF479-202 - 524 1.5e-09 37.9 40.2 9 11 0.0078 5.4 7.4 0.0 2 22 437 457 436 457 0.91 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF479-202 - 524 1.5e-09 37.9 40.2 10 11 0.003 2.1 8.7 0.4 2 22 465 485 464 485 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF479-202 - 524 1.5e-09 37.9 40.2 11 11 1.1 7.8e+02 0.5 1.1 2 20 493 511 492 512 0.81 Zinc-finger double-stranded RNA-binding zf-trcl PF13451.6 48 ZNF479-202 - 524 1.9e-07 30.9 47.7 1 12 4.3 2.9e+03 -1.8 0.1 5 13 30 38 28 42 0.73 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF479-202 - 524 1.9e-07 30.9 47.7 2 12 0.022 15 5.5 0.9 3 14 211 222 209 227 0.87 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF479-202 - 524 1.9e-07 30.9 47.7 3 12 0.0017 1.2 9.1 0.0 3 18 239 254 237 258 0.91 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF479-202 - 524 1.9e-07 30.9 47.7 4 12 0.024 16 5.4 0.1 3 14 267 278 265 281 0.90 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF479-202 - 524 1.9e-07 30.9 47.7 5 12 0.09 62 3.6 0.1 4 14 296 306 294 310 0.84 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF479-202 - 524 1.9e-07 30.9 47.7 6 12 0.012 8.6 6.4 0.3 3 18 323 338 321 340 0.85 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF479-202 - 524 1.9e-07 30.9 47.7 7 12 0.052 36 4.4 0.0 2 14 350 362 349 366 0.86 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF479-202 - 524 1.9e-07 30.9 47.7 8 12 0.012 8.5 6.4 0.2 3 14 379 390 377 392 0.91 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF479-202 - 524 1.9e-07 30.9 47.7 9 12 0.15 1e+02 2.9 0.1 4 14 408 418 406 422 0.82 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF479-202 - 524 1.9e-07 30.9 47.7 10 12 0.083 57 3.7 0.1 4 14 436 446 434 450 0.83 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF479-202 - 524 1.9e-07 30.9 47.7 11 12 0.075 52 3.9 0.6 3 14 463 474 462 478 0.87 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF479-202 - 524 1.9e-07 30.9 47.7 12 12 0.016 11 6.0 0.1 3 17 491 505 489 511 0.85 Probable zinc-ribbon domain # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF479-202.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF479-202.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF479-202.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF479-202.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF479-202.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:07:09 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF479-203.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF479-203.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF479-203.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF479-203.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF479-203.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:07:09 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZNF480-201 - 492 3.9e-92 298.9 81.5 1 12 0.019 9.4 6.9 0.4 7 18 152 163 151 169 0.87 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF480-201 - 492 3.9e-92 298.9 81.5 2 12 1.3e-09 6.7e-07 29.5 0.7 1 25 174 198 174 199 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF480-201 - 492 3.9e-92 298.9 81.5 3 12 3.4e-10 1.7e-07 31.4 3.2 1 25 202 226 202 227 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF480-201 - 492 3.9e-92 298.9 81.5 4 12 9.4e-11 4.7e-08 33.1 0.8 1 26 230 255 230 255 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF480-201 - 492 3.9e-92 298.9 81.5 5 12 1.2e-08 6.1e-06 26.4 1.5 2 26 259 283 258 283 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF480-201 - 492 3.9e-92 298.9 81.5 6 12 8.1e-07 0.0004 20.7 0.2 10 24 295 309 286 311 0.83 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF480-201 - 492 3.9e-92 298.9 81.5 7 12 2.4e-11 1.2e-08 35.0 0.4 2 24 315 337 315 339 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF480-201 - 492 3.9e-92 298.9 81.5 8 12 1.1e-09 5.5e-07 29.7 0.6 1 25 342 366 342 367 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF480-201 - 492 3.9e-92 298.9 81.5 9 12 4e-12 2e-09 37.5 0.5 1 25 370 394 370 395 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF480-201 - 492 3.9e-92 298.9 81.5 10 12 6.8e-11 3.4e-08 33.6 0.4 1 26 398 423 398 423 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF480-201 - 492 3.9e-92 298.9 81.5 11 12 7.8e-11 3.9e-08 33.4 0.5 1 25 426 450 426 451 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF480-201 - 492 3.9e-92 298.9 81.5 12 12 2.5e-11 1.2e-08 34.9 2.4 1 25 454 478 454 479 0.95 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZNF480-201 - 492 7.7e-72 234.0 77.6 1 12 0.003 1.5 9.4 0.3 6 23 162 182 159 182 0.85 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF480-201 - 492 7.7e-72 234.0 77.6 2 12 1.2e-06 0.00057 20.2 4.1 1 23 188 210 188 210 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF480-201 - 492 7.7e-72 234.0 77.6 3 12 1.7e-09 8.2e-07 29.1 1.2 1 23 216 238 216 238 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF480-201 - 492 7.7e-72 234.0 77.6 4 12 9.9e-10 4.9e-07 29.8 0.4 1 23 244 266 244 266 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF480-201 - 492 7.7e-72 234.0 77.6 5 12 1.1e-07 5.5e-05 23.4 0.3 1 21 272 292 272 293 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF480-201 - 492 7.7e-72 234.0 77.6 6 12 9.2e-08 4.6e-05 23.6 0.2 1 23 300 322 300 322 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF480-201 - 492 7.7e-72 234.0 77.6 7 12 6e-09 3e-06 27.4 0.6 1 23 328 350 328 350 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF480-201 - 492 7.7e-72 234.0 77.6 8 12 8.4e-10 4.2e-07 30.1 0.6 1 23 356 378 356 378 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF480-201 - 492 7.7e-72 234.0 77.6 9 12 2.5e-06 0.0012 19.1 0.1 1 23 384 406 384 406 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF480-201 - 492 7.7e-72 234.0 77.6 10 12 1.3e-07 6.3e-05 23.2 2.6 1 23 412 434 412 434 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF480-201 - 492 7.7e-72 234.0 77.6 11 12 2.3e-08 1.2e-05 25.5 1.1 1 23 440 462 440 462 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF480-201 - 492 7.7e-72 234.0 77.6 12 12 3.2e-07 0.00016 21.9 0.2 1 23 468 490 468 490 0.96 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZNF480-201 - 492 1.4e-41 137.5 76.0 1 12 0.045 23 6.2 0.4 1 23 160 182 160 183 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF480-201 - 492 1.4e-41 137.5 76.0 2 12 9.7e-05 0.048 14.5 3.5 1 23 188 210 188 211 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF480-201 - 492 1.4e-41 137.5 76.0 3 12 7.4e-06 0.0037 18.0 0.8 1 23 216 238 216 239 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF480-201 - 492 1.4e-41 137.5 76.0 4 12 4.7e-06 0.0023 18.6 0.2 1 23 244 266 244 267 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF480-201 - 492 1.4e-41 137.5 76.0 5 12 2.9e-05 0.014 16.2 0.5 1 21 272 292 272 294 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF480-201 - 492 1.4e-41 137.5 76.0 6 12 0.00023 0.11 13.3 0.2 1 23 300 322 300 323 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF480-201 - 492 1.4e-41 137.5 76.0 7 12 1.2e-05 0.0058 17.4 0.7 1 23 328 350 328 351 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF480-201 - 492 1.4e-41 137.5 76.0 8 12 9.2e-06 0.0046 17.7 0.4 1 23 356 378 356 379 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF480-201 - 492 1.4e-41 137.5 76.0 9 12 9.9e-06 0.0049 17.6 0.1 1 23 384 406 384 407 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF480-201 - 492 1.4e-41 137.5 76.0 10 12 0.00016 0.08 13.8 1.9 1 23 412 434 412 435 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF480-201 - 492 1.4e-41 137.5 76.0 11 12 9.3e-06 0.0046 17.7 0.8 1 23 440 462 440 463 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF480-201 - 492 1.4e-41 137.5 76.0 12 12 3.7e-05 0.018 15.8 0.3 1 23 468 490 468 491 0.95 C2H2-type zinc finger KRAB PF01352.27 42 ZNF480-201 - 492 1e-25 89.1 0.0 1 1 3.4e-28 1.7e-25 88.4 0.0 2 42 27 67 26 67 0.98 KRAB box zf-C2H2_6 PF13912.6 27 ZNF480-201 - 492 3.9e-23 80.9 79.1 1 13 1.3 6.3e+02 0.5 0.3 2 20 160 178 160 182 0.84 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF480-201 - 492 3.9e-23 80.9 79.1 2 13 0.0048 2.4 8.2 2.3 2 13 188 199 188 208 0.89 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF480-201 - 492 3.9e-23 80.9 79.1 3 13 0.00039 0.19 11.7 1.1 2 13 216 227 216 228 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF480-201 - 492 3.9e-23 80.9 79.1 4 13 0.00053 0.27 11.3 0.9 2 12 244 254 244 255 0.95 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF480-201 - 492 3.9e-23 80.9 79.1 5 13 0.0045 2.2 8.4 0.7 2 12 272 282 272 290 0.92 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF480-201 - 492 3.9e-23 80.9 79.1 6 13 0.0016 0.81 9.8 0.1 2 11 300 309 300 315 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF480-201 - 492 3.9e-23 80.9 79.1 7 13 0.002 0.98 9.5 0.7 2 11 328 337 328 338 0.97 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF480-201 - 492 3.9e-23 80.9 79.1 8 13 0.68 3.4e+02 1.4 0.1 19 26 341 348 340 349 0.85 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF480-201 - 492 3.9e-23 80.9 79.1 9 13 3.6e-06 0.0018 18.2 0.3 2 24 356 378 356 381 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF480-201 - 492 3.9e-23 80.9 79.1 10 13 0.00011 0.053 13.5 0.7 2 21 384 403 384 406 0.92 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF480-201 - 492 3.9e-23 80.9 79.1 11 13 0.0012 0.6 10.2 1.0 2 12 412 422 412 435 0.82 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF480-201 - 492 3.9e-23 80.9 79.1 12 13 1.8e-05 0.009 16.0 0.6 2 24 440 462 440 464 0.87 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF480-201 - 492 3.9e-23 80.9 79.1 13 13 0.00074 0.37 10.9 0.2 2 13 468 479 468 487 0.90 C2H2-type zinc finger Zn-ribbon_8 PF09723.10 40 ZNF480-201 - 492 4.8e-20 71.4 53.5 1 10 0.82 4.1e+02 1.2 0.0 6 20 160 174 159 181 0.82 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF480-201 - 492 4.8e-20 71.4 53.5 2 10 0.00023 0.11 12.6 3.4 6 34 188 223 187 223 0.90 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF480-201 - 492 4.8e-20 71.4 53.5 3 10 5.5e-05 0.027 14.6 3.4 6 34 216 251 215 251 0.92 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF480-201 - 492 4.8e-20 71.4 53.5 4 10 8.2e-06 0.0041 17.2 4.3 6 34 244 279 243 284 0.88 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF480-201 - 492 4.8e-20 71.4 53.5 5 10 0.0081 4 7.6 0.4 6 17 272 283 270 288 0.86 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF480-201 - 492 4.8e-20 71.4 53.5 6 10 3.2e-05 0.016 15.3 2.4 6 34 300 335 299 339 0.93 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF480-201 - 492 4.8e-20 71.4 53.5 7 10 1.2e-05 0.0059 16.7 3.1 6 34 356 391 355 394 0.84 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF480-201 - 492 4.8e-20 71.4 53.5 8 10 0.00024 0.12 12.5 4.5 6 37 384 422 383 425 0.83 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF480-201 - 492 4.8e-20 71.4 53.5 9 10 0.012 6.2 7.0 0.5 6 16 412 422 411 434 0.84 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF480-201 - 492 4.8e-20 71.4 53.5 10 10 8.4e-07 0.00042 20.4 2.1 6 39 440 480 439 481 0.87 Zinc ribbon domain zf-C2H2_11 PF16622.5 29 ZNF480-201 - 492 1.5e-18 66.2 39.1 1 12 9.3 4.6e+03 -2.5 0.2 18 26 173 181 169 182 0.78 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF480-201 - 492 1.5e-18 66.2 39.1 2 12 0.016 8 6.3 0.9 5 26 188 209 185 210 0.93 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF480-201 - 492 1.5e-18 66.2 39.1 3 12 0.053 27 4.7 0.1 5 26 216 237 213 238 0.91 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF480-201 - 492 1.5e-18 66.2 39.1 4 12 0.0013 0.67 9.8 0.0 6 26 245 265 242 266 0.93 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF480-201 - 492 1.5e-18 66.2 39.1 5 12 0.00027 0.14 12.0 0.0 5 26 272 293 268 294 0.92 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF480-201 - 492 1.5e-18 66.2 39.1 6 12 0.056 28 4.6 0.0 5 26 300 321 297 322 0.87 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF480-201 - 492 1.5e-18 66.2 39.1 7 12 0.094 47 3.9 0.1 5 26 328 349 325 350 0.82 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF480-201 - 492 1.5e-18 66.2 39.1 8 12 0.0013 0.66 9.8 0.1 5 26 356 377 353 378 0.93 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF480-201 - 492 1.5e-18 66.2 39.1 9 12 0.0025 1.2 8.9 0.0 5 26 384 405 381 406 0.92 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF480-201 - 492 1.5e-18 66.2 39.1 10 12 0.001 0.51 10.1 0.4 5 26 412 433 409 434 0.93 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF480-201 - 492 1.5e-18 66.2 39.1 11 12 0.0018 0.89 9.4 0.2 5 26 440 461 438 462 0.94 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF480-201 - 492 1.5e-18 66.2 39.1 12 12 0.011 5.3 6.9 0.0 5 26 468 489 465 490 0.86 zinc-finger C2H2-type zf-C2H2_jaz PF12171.8 27 ZNF480-201 - 492 2e-10 40.7 48.0 1 11 0.038 19 5.7 0.8 2 22 188 208 187 208 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF480-201 - 492 2e-10 40.7 48.0 2 11 0.057 29 5.1 0.4 2 21 216 235 215 236 0.88 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF480-201 - 492 2e-10 40.7 48.0 3 11 0.0021 1.1 9.7 0.2 2 22 244 264 243 264 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF480-201 - 492 2e-10 40.7 48.0 4 11 0.00084 0.42 11.0 0.1 2 22 272 292 271 292 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF480-201 - 492 2e-10 40.7 48.0 5 11 0.033 16 5.9 0.1 2 22 300 320 299 320 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF480-201 - 492 2e-10 40.7 48.0 6 11 0.028 14 6.1 0.4 2 22 328 348 327 348 0.91 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF480-201 - 492 2e-10 40.7 48.0 7 11 0.14 68 3.9 0.1 2 20 356 374 355 376 0.80 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF480-201 - 492 2e-10 40.7 48.0 8 11 0.69 3.5e+02 1.7 0.1 2 12 384 394 383 403 0.80 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF480-201 - 492 2e-10 40.7 48.0 9 11 0.0049 2.4 8.5 0.2 2 22 412 432 411 432 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF480-201 - 492 2e-10 40.7 48.0 10 11 0.022 11 6.5 0.2 2 22 440 460 439 460 0.90 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF480-201 - 492 2e-10 40.7 48.0 11 11 0.034 17 5.8 0.1 2 21 468 487 467 488 0.91 Zinc-finger double-stranded RNA-binding zf-C2HE PF16278.5 64 ZNF480-201 - 492 2.3e-10 40.8 59.7 1 10 0.032 16 6.0 4.9 21 57 168 206 89 213 0.79 C2HE / C2H2 / C2HC zinc-binding finger zf-C2HE PF16278.5 64 ZNF480-201 - 492 2.3e-10 40.8 59.7 2 10 0.68 3.4e+02 1.8 6.3 32 50 239 256 201 269 0.77 C2HE / C2H2 / C2HC zinc-binding finger zf-C2HE PF16278.5 64 ZNF480-201 - 492 2.3e-10 40.8 59.7 3 10 0.037 18 5.8 0.5 34 48 268 282 257 290 0.79 C2HE / C2H2 / C2HC zinc-binding finger zf-C2HE PF16278.5 64 ZNF480-201 - 492 2.3e-10 40.8 59.7 4 10 0.24 1.2e+02 3.2 0.2 35 57 297 318 283 325 0.79 C2HE / C2H2 / C2HC zinc-binding finger zf-C2HE PF16278.5 64 ZNF480-201 - 492 2.3e-10 40.8 59.7 5 10 0.017 8.6 6.9 0.9 35 62 325 347 311 349 0.80 C2HE / C2H2 / C2HC zinc-binding finger zf-C2HE PF16278.5 64 ZNF480-201 - 492 2.3e-10 40.8 59.7 6 10 0.0009 0.45 11.0 0.4 36 57 354 374 350 381 0.90 C2HE / C2H2 / C2HC zinc-binding finger zf-C2HE PF16278.5 64 ZNF480-201 - 492 2.3e-10 40.8 59.7 7 10 0.0045 2.2 8.8 0.1 35 61 381 406 376 409 0.89 C2HE / C2H2 / C2HC zinc-binding finger zf-C2HE PF16278.5 64 ZNF480-201 - 492 2.3e-10 40.8 59.7 8 10 0.31 1.5e+02 2.9 0.6 36 51 410 425 407 434 0.82 C2HE / C2H2 / C2HC zinc-binding finger zf-C2HE PF16278.5 64 ZNF480-201 - 492 2.3e-10 40.8 59.7 9 10 0.00036 0.18 12.3 0.5 35 61 437 462 423 465 0.83 C2HE / C2H2 / C2HC zinc-binding finger zf-C2HE PF16278.5 64 ZNF480-201 - 492 2.3e-10 40.8 59.7 10 10 0.0079 3.9 8.0 0.1 36 59 466 488 462 491 0.84 C2HE / C2H2 / C2HC zinc-binding finger XPA_N PF01286.18 32 ZNF480-201 - 492 2.8e-10 40.1 35.6 1 11 0.51 2.5e+02 1.8 0.1 3 12 189 198 187 206 0.83 XPA protein N-terminal XPA_N PF01286.18 32 ZNF480-201 - 492 2.8e-10 40.1 35.6 2 11 2.2 1.1e+03 -0.2 0.2 3 9 217 223 215 226 0.60 XPA protein N-terminal XPA_N PF01286.18 32 ZNF480-201 - 492 2.8e-10 40.1 35.6 3 11 0.012 5.8 7.0 0.1 3 17 245 260 243 262 0.79 XPA protein N-terminal XPA_N PF01286.18 32 ZNF480-201 - 492 2.8e-10 40.1 35.6 4 11 0.022 11 6.2 0.1 3 12 273 282 271 292 0.81 XPA protein N-terminal XPA_N PF01286.18 32 ZNF480-201 - 492 2.8e-10 40.1 35.6 5 11 0.007 3.5 7.8 0.1 3 11 301 309 299 314 0.91 XPA protein N-terminal XPA_N PF01286.18 32 ZNF480-201 - 492 2.8e-10 40.1 35.6 6 11 0.045 23 5.2 0.0 3 12 329 338 327 349 0.77 XPA protein N-terminal XPA_N PF01286.18 32 ZNF480-201 - 492 2.8e-10 40.1 35.6 7 11 0.082 41 4.3 0.1 3 12 357 366 355 369 0.87 XPA protein N-terminal XPA_N PF01286.18 32 ZNF480-201 - 492 2.8e-10 40.1 35.6 8 11 0.02 9.8 6.3 0.2 3 12 385 394 383 396 0.89 XPA protein N-terminal XPA_N PF01286.18 32 ZNF480-201 - 492 2.8e-10 40.1 35.6 9 11 0.033 16 5.6 0.2 3 11 413 421 411 424 0.89 XPA protein N-terminal XPA_N PF01286.18 32 ZNF480-201 - 492 2.8e-10 40.1 35.6 10 11 0.1 52 4.0 0.1 3 11 441 449 439 451 0.87 XPA protein N-terminal XPA_N PF01286.18 32 ZNF480-201 - 492 2.8e-10 40.1 35.6 11 11 0.0027 1.3 9.1 0.0 3 19 469 486 467 489 0.81 XPA protein N-terminal zf_UBZ PF18439.1 32 ZNF480-201 - 492 5.9e-10 38.6 37.6 1 11 0.016 8 6.2 0.1 3 20 188 206 186 206 0.91 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF480-201 - 492 5.9e-10 38.6 37.6 2 11 0.4 2e+02 1.7 0.1 3 14 216 227 214 235 0.78 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF480-201 - 492 5.9e-10 38.6 37.6 3 11 0.023 11 5.7 0.1 3 15 244 256 242 263 0.83 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF480-201 - 492 5.9e-10 38.6 37.6 4 11 0.034 17 5.1 0.1 3 15 272 284 270 290 0.80 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF480-201 - 492 5.9e-10 38.6 37.6 5 11 0.014 7.1 6.3 0.1 3 12 300 309 298 314 0.88 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF480-201 - 492 5.9e-10 38.6 37.6 6 11 0.017 8.5 6.1 0.2 3 16 328 342 326 346 0.78 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF480-201 - 492 5.9e-10 38.6 37.6 7 11 0.036 18 5.0 0.1 3 13 356 366 354 374 0.85 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF480-201 - 492 5.9e-10 38.6 37.6 8 11 0.015 7.5 6.2 0.0 3 14 384 395 382 403 0.83 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF480-201 - 492 5.9e-10 38.6 37.6 9 11 0.008 4 7.1 0.2 3 18 412 428 410 431 0.75 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF480-201 - 492 5.9e-10 38.6 37.6 10 11 0.057 28 4.4 0.1 3 12 440 449 438 455 0.89 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF480-201 - 492 5.9e-10 38.6 37.6 11 11 0.039 19 4.9 0.1 3 13 468 478 466 486 0.85 Ubiquitin-Binding Zinc Finger C1_1 PF00130.22 53 ZNF480-201 - 492 2.3e-09 37.0 45.2 1 11 0.0076 3.8 7.5 3.8 5 37 181 224 178 226 0.80 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF480-201 - 492 2.3e-09 37.0 45.2 2 11 0.07 35 4.4 4.2 9 37 213 252 206 256 0.77 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF480-201 - 492 2.3e-09 37.0 45.2 3 11 0.029 14 5.6 2.4 4 35 237 278 230 278 0.81 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF480-201 - 492 2.3e-09 37.0 45.2 4 11 0.054 27 4.7 0.6 5 24 266 284 262 288 0.74 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF480-201 - 492 2.3e-09 37.0 45.2 5 11 0.00031 0.15 11.9 1.0 2 37 290 336 290 337 0.85 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF480-201 - 492 2.3e-09 37.0 45.2 6 11 0.065 33 4.5 0.2 6 21 323 337 318 345 0.73 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF480-201 - 492 2.3e-09 37.0 45.2 7 11 0.00023 0.12 12.3 1.9 2 36 346 391 345 393 0.89 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF480-201 - 492 2.3e-09 37.0 45.2 8 11 0.0012 0.61 10.0 1.4 7 38 380 421 373 424 0.82 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF480-201 - 492 2.3e-09 37.0 45.2 9 11 0.0022 1.1 9.2 1.6 6 37 406 448 402 450 0.82 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF480-201 - 492 2.3e-09 37.0 45.2 10 11 0.0037 1.9 8.5 2.0 5 36 434 475 430 479 0.79 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF480-201 - 492 2.3e-09 37.0 45.2 11 11 0.051 26 4.8 0.2 7 22 463 478 454 488 0.75 Phorbol esters/diacylglycerol binding domain (C1 domain) DZR PF12773.7 49 ZNF480-201 - 492 3.4e-08 33.4 42.0 1 2 0.0098 4.9 7.3 9.3 14 49 189 250 160 262 0.86 Double zinc ribbon DZR PF12773.7 49 ZNF480-201 - 492 3.4e-08 33.4 42.0 2 2 0.0073 3.6 7.7 5.5 1 35 246 306 235 313 0.54 Double zinc ribbon zinc_ribbon_15 PF17032.5 86 ZNF480-201 - 492 1e-06 29.4 44.0 1 10 0.006 3 8.7 5.3 35 81 185 231 157 234 0.87 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF480-201 - 492 1e-06 29.4 44.0 2 10 0.00084 0.42 11.4 3.8 29 78 207 256 202 263 0.88 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF480-201 - 492 1e-06 29.4 44.0 3 10 0.0019 0.93 10.3 2.8 31 78 237 284 230 287 0.83 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF480-201 - 492 1e-06 29.4 44.0 4 10 0.0039 1.9 9.3 1.2 32 74 266 308 261 314 0.89 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF480-201 - 492 1e-06 29.4 44.0 5 10 0.0056 2.8 8.8 0.6 29 78 291 340 287 344 0.84 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF480-201 - 492 1e-06 29.4 44.0 6 10 0.00047 0.23 12.2 1.0 29 77 319 367 310 371 0.87 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF480-201 - 492 1e-06 29.4 44.0 7 10 0.00035 0.17 12.6 0.9 29 76 347 394 342 399 0.88 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF480-201 - 492 1e-06 29.4 44.0 8 10 0.0082 4.1 8.2 1.0 32 78 378 424 374 430 0.86 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF480-201 - 492 1e-06 29.4 44.0 9 10 0.0019 0.94 10.3 1.0 34 75 408 449 401 454 0.84 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF480-201 - 492 1e-06 29.4 44.0 10 10 0.029 14 6.5 4.9 31 75 433 477 414 482 0.82 zinc-ribbon family # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF480-201.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF480-201.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF480-201.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF480-201.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF480-201.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:07:10 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZNF480-202 - 458 1.5e-92 300.3 81.5 1 12 0.017 8.6 7.0 0.4 7 18 118 129 117 135 0.87 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF480-202 - 458 1.5e-92 300.3 81.5 2 12 1.2e-09 6.1e-07 29.6 0.7 1 25 140 164 140 165 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF480-202 - 458 1.5e-92 300.3 81.5 3 12 3.1e-10 1.5e-07 31.5 3.2 1 25 168 192 168 193 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF480-202 - 458 1.5e-92 300.3 81.5 4 12 8.6e-11 4.3e-08 33.2 0.8 1 26 196 221 196 221 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF480-202 - 458 1.5e-92 300.3 81.5 5 12 1.1e-08 5.6e-06 26.5 1.5 2 26 225 249 224 249 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF480-202 - 458 1.5e-92 300.3 81.5 6 12 7.4e-07 0.00037 20.8 0.2 10 24 261 275 252 277 0.83 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF480-202 - 458 1.5e-92 300.3 81.5 7 12 2.2e-11 1.1e-08 35.1 0.4 2 24 281 303 281 305 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF480-202 - 458 1.5e-92 300.3 81.5 8 12 1e-09 5.1e-07 29.8 0.6 1 25 308 332 308 333 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF480-202 - 458 1.5e-92 300.3 81.5 9 12 3.6e-12 1.8e-09 37.6 0.5 1 25 336 360 336 361 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF480-202 - 458 1.5e-92 300.3 81.5 10 12 6.2e-11 3.1e-08 33.7 0.4 1 26 364 389 364 389 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF480-202 - 458 1.5e-92 300.3 81.5 11 12 7.2e-11 3.6e-08 33.5 0.5 1 25 392 416 392 417 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF480-202 - 458 1.5e-92 300.3 81.5 12 12 2.3e-11 1.1e-08 35.1 2.4 1 25 420 444 420 445 0.95 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZNF480-202 - 458 2.9e-72 235.3 77.6 1 12 0.0027 1.4 9.6 0.3 6 23 128 148 125 148 0.85 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF480-202 - 458 2.9e-72 235.3 77.6 2 12 1.1e-06 0.00053 20.3 4.1 1 23 154 176 154 176 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF480-202 - 458 2.9e-72 235.3 77.6 3 12 1.5e-09 7.6e-07 29.3 1.2 1 23 182 204 182 204 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF480-202 - 458 2.9e-72 235.3 77.6 4 12 9.1e-10 4.5e-07 30.0 0.4 1 23 210 232 210 232 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF480-202 - 458 2.9e-72 235.3 77.6 5 12 1e-07 5.1e-05 23.5 0.3 1 21 238 258 238 259 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF480-202 - 458 2.9e-72 235.3 77.6 6 12 8.4e-08 4.2e-05 23.8 0.2 1 23 266 288 266 288 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF480-202 - 458 2.9e-72 235.3 77.6 7 12 5.5e-09 2.7e-06 27.5 0.6 1 23 294 316 294 316 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF480-202 - 458 2.9e-72 235.3 77.6 8 12 7.7e-10 3.8e-07 30.2 0.6 1 23 322 344 322 344 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF480-202 - 458 2.9e-72 235.3 77.6 9 12 2.3e-06 0.0011 19.3 0.1 1 23 350 372 350 372 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF480-202 - 458 2.9e-72 235.3 77.6 10 12 1.2e-07 5.8e-05 23.3 2.6 1 23 378 400 378 400 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF480-202 - 458 2.9e-72 235.3 77.6 11 12 2.2e-08 1.1e-05 25.6 1.1 1 23 406 428 406 428 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF480-202 - 458 2.9e-72 235.3 77.6 12 12 2.9e-07 0.00015 22.1 0.2 1 23 434 456 434 456 0.96 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZNF480-202 - 458 5.3e-42 138.8 76.1 1 12 0.041 21 6.3 0.4 1 23 126 148 126 149 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF480-202 - 458 5.3e-42 138.8 76.1 2 12 8.9e-05 0.044 14.6 3.5 1 23 154 176 154 177 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF480-202 - 458 5.3e-42 138.8 76.1 3 12 6.8e-06 0.0034 18.1 0.8 1 23 182 204 182 205 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF480-202 - 458 5.3e-42 138.8 76.1 4 12 4.3e-06 0.0021 18.7 0.2 1 23 210 232 210 233 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF480-202 - 458 5.3e-42 138.8 76.1 5 12 2.6e-05 0.013 16.3 0.5 1 21 238 258 238 260 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF480-202 - 458 5.3e-42 138.8 76.1 6 12 0.00021 0.1 13.5 0.2 1 23 266 288 266 289 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF480-202 - 458 5.3e-42 138.8 76.1 7 12 1.1e-05 0.0053 17.5 0.7 1 23 294 316 294 317 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF480-202 - 458 5.3e-42 138.8 76.1 8 12 8.4e-06 0.0042 17.8 0.4 1 23 322 344 322 345 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF480-202 - 458 5.3e-42 138.8 76.1 9 12 9.1e-06 0.0045 17.7 0.1 1 23 350 372 350 373 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF480-202 - 458 5.3e-42 138.8 76.1 10 12 0.00015 0.073 13.9 1.9 1 23 378 400 378 401 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF480-202 - 458 5.3e-42 138.8 76.1 11 12 8.5e-06 0.0043 17.8 0.8 1 23 406 428 406 429 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF480-202 - 458 5.3e-42 138.8 76.1 12 12 3.4e-05 0.017 15.9 0.3 1 23 434 456 434 457 0.95 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF480-202 - 458 1.1e-22 79.5 81.8 1 13 1.2 5.8e+02 0.7 0.3 2 20 126 144 126 148 0.84 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF480-202 - 458 1.1e-22 79.5 81.8 2 13 0.0045 2.2 8.4 2.3 2 13 154 165 154 174 0.89 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF480-202 - 458 1.1e-22 79.5 81.8 3 13 0.00036 0.18 11.9 1.1 2 13 182 193 182 194 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF480-202 - 458 1.1e-22 79.5 81.8 4 13 0.00049 0.25 11.4 0.9 2 12 210 220 210 221 0.95 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF480-202 - 458 1.1e-22 79.5 81.8 5 13 0.0041 2.1 8.5 0.7 2 12 238 248 238 256 0.92 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF480-202 - 458 1.1e-22 79.5 81.8 6 13 0.0015 0.75 9.9 0.1 2 11 266 275 266 281 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF480-202 - 458 1.1e-22 79.5 81.8 7 13 0.0018 0.9 9.6 0.7 2 11 294 303 294 304 0.97 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF480-202 - 458 1.1e-22 79.5 81.8 8 13 0.63 3.2e+02 1.5 0.1 19 26 307 314 306 315 0.85 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF480-202 - 458 1.1e-22 79.5 81.8 9 13 3.3e-06 0.0016 18.4 0.3 2 24 322 344 322 347 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF480-202 - 458 1.1e-22 79.5 81.8 10 13 9.7e-05 0.048 13.7 0.7 2 21 350 369 350 372 0.92 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF480-202 - 458 1.1e-22 79.5 81.8 11 13 0.0011 0.56 10.3 1.0 2 12 378 388 378 401 0.82 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF480-202 - 458 1.1e-22 79.5 81.8 12 13 4.9e-05 0.025 14.6 2.1 2 24 406 428 406 430 0.87 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF480-202 - 458 1.1e-22 79.5 81.8 13 13 0.00068 0.34 11.0 0.2 2 13 434 445 434 453 0.90 C2H2-type zinc finger Zn-ribbon_8 PF09723.10 40 ZNF480-202 - 458 2.5e-20 72.3 53.7 1 10 0.75 3.8e+02 1.3 0.0 6 20 126 140 125 147 0.82 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF480-202 - 458 2.5e-20 72.3 53.7 2 10 0.00022 0.11 12.6 3.4 6 34 154 189 153 189 0.90 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF480-202 - 458 2.5e-20 72.3 53.7 3 10 6e-05 0.03 14.4 3.7 6 34 182 217 181 217 0.92 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF480-202 - 458 2.5e-20 72.3 53.7 4 10 8.6e-06 0.0043 17.1 4.5 6 34 210 245 209 250 0.88 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF480-202 - 458 2.5e-20 72.3 53.7 5 10 0.0076 3.8 7.7 0.4 6 17 238 249 237 254 0.85 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF480-202 - 458 2.5e-20 72.3 53.7 6 10 3e-05 0.015 15.4 2.5 6 34 266 301 265 306 0.93 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF480-202 - 458 2.5e-20 72.3 53.7 7 10 1e-05 0.0051 16.9 3.0 6 34 322 357 321 360 0.84 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF480-202 - 458 2.5e-20 72.3 53.7 8 10 0.00018 0.092 12.9 4.3 6 37 350 388 349 391 0.83 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF480-202 - 458 2.5e-20 72.3 53.7 9 10 0.011 5.5 7.2 0.4 6 16 378 388 377 400 0.84 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF480-202 - 458 2.5e-20 72.3 53.7 10 10 7.9e-07 0.00039 20.5 2.1 6 39 406 446 405 447 0.87 Zinc ribbon domain zf-C2H2_11 PF16622.5 29 ZNF480-202 - 458 5.9e-19 67.5 39.1 1 12 8.6 4.3e+03 -2.4 0.2 18 26 139 147 135 148 0.78 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF480-202 - 458 5.9e-19 67.5 39.1 2 12 0.015 7.3 6.4 0.9 5 26 154 175 151 176 0.93 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF480-202 - 458 5.9e-19 67.5 39.1 3 12 0.049 24 4.8 0.1 5 26 182 203 179 204 0.91 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF480-202 - 458 5.9e-19 67.5 39.1 4 12 0.0012 0.62 9.9 0.0 6 26 211 231 208 232 0.93 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF480-202 - 458 5.9e-19 67.5 39.1 5 12 0.00025 0.12 12.1 0.0 5 26 238 259 234 260 0.92 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF480-202 - 458 5.9e-19 67.5 39.1 6 12 0.052 26 4.7 0.0 5 26 266 287 263 288 0.87 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF480-202 - 458 5.9e-19 67.5 39.1 7 12 0.086 43 4.0 0.1 5 26 294 315 291 316 0.82 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF480-202 - 458 5.9e-19 67.5 39.1 8 12 0.0012 0.61 9.9 0.1 5 26 322 343 319 344 0.93 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF480-202 - 458 5.9e-19 67.5 39.1 9 12 0.0023 1.1 9.1 0.0 5 26 350 371 347 372 0.92 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF480-202 - 458 5.9e-19 67.5 39.1 10 12 0.00094 0.47 10.3 0.4 5 26 378 399 375 400 0.93 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF480-202 - 458 5.9e-19 67.5 39.1 11 12 0.0016 0.82 9.5 0.2 5 26 406 427 404 428 0.94 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF480-202 - 458 5.9e-19 67.5 39.1 12 12 0.0097 4.8 7.0 0.0 5 26 434 455 431 456 0.86 zinc-finger C2H2-type zf-C2H2_jaz PF12171.8 27 ZNF480-202 - 458 8.1e-11 41.9 48.0 1 11 0.035 17 5.8 0.8 2 22 154 174 153 174 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF480-202 - 458 8.1e-11 41.9 48.0 2 11 0.053 26 5.2 0.4 2 21 182 201 181 202 0.88 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF480-202 - 458 8.1e-11 41.9 48.0 3 11 0.002 0.97 9.8 0.2 2 22 210 230 209 230 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF480-202 - 458 8.1e-11 41.9 48.0 4 11 0.00078 0.39 11.1 0.1 2 22 238 258 237 258 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF480-202 - 458 8.1e-11 41.9 48.0 5 11 0.03 15 6.0 0.1 2 22 266 286 265 286 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF480-202 - 458 8.1e-11 41.9 48.0 6 11 0.026 13 6.2 0.4 2 22 294 314 293 314 0.91 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF480-202 - 458 8.1e-11 41.9 48.0 7 11 0.12 62 4.0 0.1 2 20 322 340 321 342 0.80 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF480-202 - 458 8.1e-11 41.9 48.0 8 11 0.64 3.2e+02 1.8 0.1 2 12 350 360 349 369 0.80 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF480-202 - 458 8.1e-11 41.9 48.0 9 11 0.0045 2.2 8.6 0.2 2 22 378 398 377 398 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF480-202 - 458 8.1e-11 41.9 48.0 10 11 0.02 9.9 6.6 0.2 2 22 406 426 405 426 0.90 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF480-202 - 458 8.1e-11 41.9 48.0 11 11 0.031 16 6.0 0.1 2 21 434 453 433 454 0.91 Zinc-finger double-stranded RNA-binding XPA_N PF01286.18 32 ZNF480-202 - 458 1.2e-10 41.2 35.6 1 11 0.47 2.3e+02 1.9 0.1 3 12 155 164 153 172 0.83 XPA protein N-terminal XPA_N PF01286.18 32 ZNF480-202 - 458 1.2e-10 41.2 35.6 2 11 2 1e+03 -0.1 0.2 3 9 183 189 181 192 0.60 XPA protein N-terminal XPA_N PF01286.18 32 ZNF480-202 - 458 1.2e-10 41.2 35.6 3 11 0.011 5.4 7.2 0.1 3 17 211 226 209 228 0.79 XPA protein N-terminal XPA_N PF01286.18 32 ZNF480-202 - 458 1.2e-10 41.2 35.6 4 11 0.02 9.9 6.3 0.1 3 12 239 248 237 258 0.81 XPA protein N-terminal XPA_N PF01286.18 32 ZNF480-202 - 458 1.2e-10 41.2 35.6 5 11 0.0065 3.2 7.9 0.1 3 11 267 275 265 280 0.91 XPA protein N-terminal XPA_N PF01286.18 32 ZNF480-202 - 458 1.2e-10 41.2 35.6 6 11 0.042 21 5.3 0.0 3 12 295 304 293 315 0.77 XPA protein N-terminal XPA_N PF01286.18 32 ZNF480-202 - 458 1.2e-10 41.2 35.6 7 11 0.076 38 4.4 0.1 3 12 323 332 321 335 0.87 XPA protein N-terminal XPA_N PF01286.18 32 ZNF480-202 - 458 1.2e-10 41.2 35.6 8 11 0.018 9.1 6.4 0.2 3 12 351 360 349 362 0.89 XPA protein N-terminal XPA_N PF01286.18 32 ZNF480-202 - 458 1.2e-10 41.2 35.6 9 11 0.03 15 5.7 0.2 3 11 379 387 377 390 0.89 XPA protein N-terminal XPA_N PF01286.18 32 ZNF480-202 - 458 1.2e-10 41.2 35.6 10 11 0.097 48 4.1 0.1 3 11 407 415 405 417 0.87 XPA protein N-terminal XPA_N PF01286.18 32 ZNF480-202 - 458 1.2e-10 41.2 35.6 11 11 0.0024 1.2 9.2 0.0 3 19 435 452 433 455 0.81 XPA protein N-terminal zf-C2HE PF16278.5 64 ZNF480-202 - 458 1.4e-10 41.5 60.2 1 11 0.036 18 5.9 5.3 21 57 134 172 55 179 0.79 C2HE / C2H2 / C2HC zinc-binding finger zf-C2HE PF16278.5 64 ZNF480-202 - 458 1.4e-10 41.5 60.2 2 11 0.19 93 3.6 0.7 35 47 179 191 169 199 0.84 C2HE / C2H2 / C2HC zinc-binding finger zf-C2HE PF16278.5 64 ZNF480-202 - 458 1.4e-10 41.5 60.2 3 11 0.018 8.9 6.8 0.5 34 50 206 222 194 228 0.81 C2HE / C2H2 / C2HC zinc-binding finger zf-C2HE PF16278.5 64 ZNF480-202 - 458 1.4e-10 41.5 60.2 4 11 0.036 18 5.9 0.7 34 48 234 248 222 258 0.79 C2HE / C2H2 / C2HC zinc-binding finger zf-C2HE PF16278.5 64 ZNF480-202 - 458 1.4e-10 41.5 60.2 5 11 0.21 1.1e+02 3.4 0.2 35 57 263 284 248 291 0.78 C2HE / C2H2 / C2HC zinc-binding finger zf-C2HE PF16278.5 64 ZNF480-202 - 458 1.4e-10 41.5 60.2 6 11 0.016 7.9 7.0 1.0 35 62 291 313 277 315 0.80 C2HE / C2H2 / C2HC zinc-binding finger zf-C2HE PF16278.5 64 ZNF480-202 - 458 1.4e-10 41.5 60.2 7 11 0.00083 0.41 11.1 0.4 36 57 320 340 316 347 0.90 C2HE / C2H2 / C2HC zinc-binding finger zf-C2HE PF16278.5 64 ZNF480-202 - 458 1.4e-10 41.5 60.2 8 11 0.0042 2.1 8.9 0.1 36 61 348 372 343 375 0.89 C2HE / C2H2 / C2HC zinc-binding finger zf-C2HE PF16278.5 64 ZNF480-202 - 458 1.4e-10 41.5 60.2 9 11 0.28 1.4e+02 3.0 0.6 36 51 376 391 373 400 0.82 C2HE / C2H2 / C2HC zinc-binding finger zf-C2HE PF16278.5 64 ZNF480-202 - 458 1.4e-10 41.5 60.2 10 11 0.00033 0.17 12.4 0.5 35 61 403 428 389 431 0.83 C2HE / C2H2 / C2HC zinc-binding finger zf-C2HE PF16278.5 64 ZNF480-202 - 458 1.4e-10 41.5 60.2 11 11 0.0072 3.6 8.1 0.1 36 59 432 454 428 457 0.84 C2HE / C2H2 / C2HC zinc-binding finger zf_UBZ PF18439.1 32 ZNF480-202 - 458 2.5e-10 39.8 37.6 1 11 0.015 7.4 6.3 0.1 3 20 154 172 152 172 0.91 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF480-202 - 458 2.5e-10 39.8 37.6 2 11 0.37 1.9e+02 1.8 0.1 3 14 182 193 180 201 0.78 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF480-202 - 458 2.5e-10 39.8 37.6 3 11 0.021 11 5.8 0.1 3 15 210 222 208 229 0.83 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF480-202 - 458 2.5e-10 39.8 37.6 4 11 0.031 16 5.2 0.1 3 15 238 250 236 256 0.80 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF480-202 - 458 2.5e-10 39.8 37.6 5 11 0.013 6.6 6.4 0.1 3 12 266 275 264 280 0.88 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF480-202 - 458 2.5e-10 39.8 37.6 6 11 0.016 7.8 6.2 0.2 3 16 294 308 292 312 0.78 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF480-202 - 458 2.5e-10 39.8 37.6 7 11 0.033 16 5.2 0.1 3 13 322 332 320 340 0.85 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF480-202 - 458 2.5e-10 39.8 37.6 8 11 0.014 6.9 6.4 0.0 3 15 350 362 348 369 0.83 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF480-202 - 458 2.5e-10 39.8 37.6 9 11 0.0074 3.7 7.2 0.2 3 18 378 394 376 397 0.75 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF480-202 - 458 2.5e-10 39.8 37.6 10 11 0.052 26 4.5 0.1 3 12 406 415 404 421 0.89 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF480-202 - 458 2.5e-10 39.8 37.6 11 11 0.036 18 5.0 0.1 3 13 434 444 432 452 0.85 Ubiquitin-Binding Zinc Finger C1_1 PF00130.22 53 ZNF480-202 - 458 5.2e-10 39.1 44.1 1 10 0.01 5.2 7.0 4.3 5 36 147 189 144 191 0.79 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF480-202 - 458 5.2e-10 39.1 44.1 2 10 0.07 35 4.4 4.1 9 37 179 218 172 221 0.77 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF480-202 - 458 5.2e-10 39.1 44.1 3 10 0.045 22 5.0 0.4 5 24 232 250 227 254 0.75 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF480-202 - 458 5.2e-10 39.1 44.1 4 10 0.00025 0.13 12.2 0.9 2 37 256 302 256 303 0.86 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF480-202 - 458 5.2e-10 39.1 44.1 5 10 0.06 30 4.6 0.2 6 21 289 303 284 311 0.73 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF480-202 - 458 5.2e-10 39.1 44.1 6 10 0.0002 0.1 12.5 1.8 2 36 312 357 311 359 0.89 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF480-202 - 458 5.2e-10 39.1 44.1 7 10 0.001 0.51 10.3 1.2 7 38 346 387 339 390 0.82 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF480-202 - 458 5.2e-10 39.1 44.1 8 10 0.0016 0.79 9.7 1.5 6 37 372 414 368 421 0.83 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF480-202 - 458 5.2e-10 39.1 44.1 9 10 0.0033 1.6 8.7 1.9 5 36 400 441 396 443 0.78 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF480-202 - 458 5.2e-10 39.1 44.1 10 10 0.047 23 5.0 0.2 7 22 429 444 420 454 0.75 Phorbol esters/diacylglycerol binding domain (C1 domain) DZR PF12773.7 49 ZNF480-202 - 458 1.4e-08 34.6 41.5 1 3 0.012 5.8 7.0 9.6 13 49 154 216 126 216 0.86 Double zinc ribbon DZR PF12773.7 49 ZNF480-202 - 458 1.4e-08 34.6 41.5 2 3 0.011 5.5 7.1 4.2 3 41 172 222 171 228 0.79 Double zinc ribbon DZR PF12773.7 49 ZNF480-202 - 458 1.4e-08 34.6 41.5 3 3 0.0076 3.8 7.6 5.6 1 35 212 272 204 279 0.55 Double zinc ribbon zinc_ribbon_15 PF17032.5 86 ZNF480-202 - 458 6e-07 30.1 44.1 1 9 0.005 2.5 8.9 5.2 36 81 152 197 126 200 0.88 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF480-202 - 458 6e-07 30.1 44.1 2 9 0.00066 0.33 11.7 3.6 29 78 173 222 167 227 0.88 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF480-202 - 458 6e-07 30.1 44.1 3 9 0.0017 0.86 10.4 2.8 31 78 203 250 196 253 0.83 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF480-202 - 458 6e-07 30.1 44.1 4 9 0.0039 1.9 9.3 1.3 32 74 232 274 228 280 0.89 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF480-202 - 458 6e-07 30.1 44.1 5 9 0.0053 2.7 8.8 0.8 29 78 257 306 252 312 0.84 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF480-202 - 458 6e-07 30.1 44.1 6 9 0.00043 0.22 12.3 1.0 30 77 286 333 278 338 0.88 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF480-202 - 458 6e-07 30.1 44.1 7 9 0.0028 1.4 9.7 4.0 29 76 313 360 310 393 0.86 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF480-202 - 458 6e-07 30.1 44.1 8 9 0.0024 1.2 9.9 1.2 34 75 374 415 367 417 0.84 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF480-202 - 458 6e-07 30.1 44.1 9 9 0.035 17 6.2 5.5 31 74 399 442 379 448 0.76 zinc-ribbon family YhfH PF14149.6 37 ZNF480-202 - 458 8.1e-07 28.9 43.0 1 11 0.21 1e+02 3.0 0.1 15 23 155 163 152 167 0.85 YhfH-like protein YhfH PF14149.6 37 ZNF480-202 - 458 8.1e-07 28.9 43.0 2 11 0.41 2e+02 2.0 0.1 15 23 183 191 177 194 0.86 YhfH-like protein YhfH PF14149.6 37 ZNF480-202 - 458 8.1e-07 28.9 43.0 3 11 0.053 26 4.9 0.1 15 24 211 220 206 225 0.85 YhfH-like protein YhfH PF14149.6 37 ZNF480-202 - 458 8.1e-07 28.9 43.0 4 11 0.14 68 3.6 0.4 15 23 239 247 236 251 0.82 YhfH-like protein YhfH PF14149.6 37 ZNF480-202 - 458 8.1e-07 28.9 43.0 5 11 0.069 34 4.5 0.1 15 23 267 275 261 279 0.85 YhfH-like protein YhfH PF14149.6 37 ZNF480-202 - 458 8.1e-07 28.9 43.0 6 11 0.031 15 5.6 0.2 15 25 295 305 289 308 0.81 YhfH-like protein YhfH PF14149.6 37 ZNF480-202 - 458 8.1e-07 28.9 43.0 7 11 0.014 6.9 6.7 0.1 15 25 323 333 317 336 0.86 YhfH-like protein YhfH PF14149.6 37 ZNF480-202 - 458 8.1e-07 28.9 43.0 8 11 0.015 7.3 6.7 0.2 15 25 351 361 345 363 0.88 YhfH-like protein YhfH PF14149.6 37 ZNF480-202 - 458 8.1e-07 28.9 43.0 9 11 0.056 28 4.8 0.3 15 23 379 387 372 390 0.84 YhfH-like protein YhfH PF14149.6 37 ZNF480-202 - 458 8.1e-07 28.9 43.0 10 11 0.024 12 6.0 0.1 15 25 407 417 405 420 0.83 YhfH-like protein YhfH PF14149.6 37 ZNF480-202 - 458 8.1e-07 28.9 43.0 11 11 0.056 28 4.8 0.1 15 23 435 443 429 448 0.85 YhfH-like protein # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF480-202.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF480-202.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF480-202.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF480-202.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF480-202.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:07:10 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZNF480-203 - 535 1.3e-91 297.3 81.5 1 12 0.021 10 6.7 0.4 7 18 195 206 194 212 0.87 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF480-203 - 535 1.3e-91 297.3 81.5 2 12 1.5e-09 7.4e-07 29.3 0.7 1 25 217 241 217 242 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF480-203 - 535 1.3e-91 297.3 81.5 3 12 3.9e-10 1.9e-07 31.2 3.2 1 25 245 269 245 270 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF480-203 - 535 1.3e-91 297.3 81.5 4 12 1.1e-10 5.2e-08 33.0 0.8 1 26 273 298 273 298 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF480-203 - 535 1.3e-91 297.3 81.5 5 12 1.4e-08 6.8e-06 26.3 1.5 2 26 302 326 301 326 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF480-203 - 535 1.3e-91 297.3 81.5 6 12 9.2e-07 0.00045 20.5 0.2 10 24 338 352 329 354 0.83 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF480-203 - 535 1.3e-91 297.3 81.5 7 12 2.7e-11 1.3e-08 34.8 0.4 2 24 358 380 358 382 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF480-203 - 535 1.3e-91 297.3 81.5 8 12 1.3e-09 6.1e-07 29.6 0.6 1 25 385 409 385 410 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF480-203 - 535 1.3e-91 297.3 81.5 9 12 4.5e-12 2.2e-09 37.3 0.5 1 25 413 437 413 438 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF480-203 - 535 1.3e-91 297.3 81.5 10 12 7.7e-11 3.8e-08 33.4 0.4 1 26 441 466 441 466 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF480-203 - 535 1.3e-91 297.3 81.5 11 12 8.9e-11 4.3e-08 33.2 0.5 1 25 469 493 469 494 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF480-203 - 535 1.3e-91 297.3 81.5 12 12 2.8e-11 1.4e-08 34.8 2.4 1 25 497 521 497 522 0.95 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZNF480-203 - 535 2.5e-71 232.3 77.6 1 12 0.0034 1.6 9.3 0.3 6 23 205 225 202 225 0.85 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF480-203 - 535 2.5e-71 232.3 77.6 2 12 1.3e-06 0.00064 20.0 4.1 1 23 231 253 231 253 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF480-203 - 535 2.5e-71 232.3 77.6 3 12 1.9e-09 9.1e-07 29.0 1.2 1 23 259 281 259 281 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF480-203 - 535 2.5e-71 232.3 77.6 4 12 1.1e-09 5.4e-07 29.7 0.4 1 23 287 309 287 309 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF480-203 - 535 2.5e-71 232.3 77.6 5 12 1.3e-07 6.1e-05 23.3 0.3 1 21 315 335 315 336 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF480-203 - 535 2.5e-71 232.3 77.6 6 12 1e-07 5.1e-05 23.5 0.2 1 23 343 365 343 365 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF480-203 - 535 2.5e-71 232.3 77.6 7 12 6.8e-09 3.3e-06 27.2 0.6 1 23 371 393 371 393 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF480-203 - 535 2.5e-71 232.3 77.6 8 12 9.5e-10 4.6e-07 29.9 0.6 1 23 399 421 399 421 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF480-203 - 535 2.5e-71 232.3 77.6 9 12 2.8e-06 0.0014 19.0 0.1 1 23 427 449 427 449 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF480-203 - 535 2.5e-71 232.3 77.6 10 12 1.4e-07 7e-05 23.1 2.6 1 23 455 477 455 477 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF480-203 - 535 2.5e-71 232.3 77.6 11 12 2.7e-08 1.3e-05 25.4 1.1 1 23 483 505 483 505 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF480-203 - 535 2.5e-71 232.3 77.6 12 12 3.6e-07 0.00018 21.8 0.2 1 23 511 533 511 533 0.96 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZNF480-203 - 535 4.8e-41 135.9 76.0 1 12 0.051 25 6.1 0.4 1 23 203 225 203 226 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF480-203 - 535 4.8e-41 135.9 76.0 2 12 0.00011 0.053 14.4 3.5 1 23 231 253 231 254 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF480-203 - 535 4.8e-41 135.9 76.0 3 12 8.4e-06 0.0041 17.8 0.8 1 23 259 281 259 282 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF480-203 - 535 4.8e-41 135.9 76.0 4 12 5.4e-06 0.0026 18.5 0.2 1 23 287 309 287 310 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF480-203 - 535 4.8e-41 135.9 76.0 5 12 3.2e-05 0.016 16.0 0.5 1 21 315 335 315 337 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF480-203 - 535 4.8e-41 135.9 76.0 6 12 0.00026 0.13 13.2 0.2 1 23 343 365 343 366 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF480-203 - 535 4.8e-41 135.9 76.0 7 12 1.3e-05 0.0064 17.2 0.7 1 23 371 393 371 394 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF480-203 - 535 4.8e-41 135.9 76.0 8 12 1e-05 0.0051 17.6 0.4 1 23 399 421 399 422 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF480-203 - 535 4.8e-41 135.9 76.0 9 12 1.1e-05 0.0055 17.4 0.1 1 23 427 449 427 450 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF480-203 - 535 4.8e-41 135.9 76.0 10 12 0.00018 0.089 13.7 1.9 1 23 455 477 455 478 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF480-203 - 535 4.8e-41 135.9 76.0 11 12 1.1e-05 0.0051 17.5 0.8 1 23 483 505 483 506 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF480-203 - 535 4.8e-41 135.9 76.0 12 12 4.2e-05 0.02 15.7 0.3 1 23 511 533 511 534 0.95 C2H2-type zinc finger KRAB PF01352.27 42 ZNF480-203 - 535 1.1e-25 89.0 0.0 1 1 3.9e-28 1.9e-25 88.2 0.0 2 42 27 67 26 67 0.98 KRAB box zf-C2H2_6 PF13912.6 27 ZNF480-203 - 535 1.5e-22 79.1 79.1 1 13 1.4 6.9e+02 0.4 0.3 2 20 203 221 203 225 0.83 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF480-203 - 535 1.5e-22 79.1 79.1 2 13 0.0055 2.7 8.1 2.3 2 13 231 242 231 251 0.89 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF480-203 - 535 1.5e-22 79.1 79.1 3 13 0.00044 0.21 11.6 1.1 2 13 259 270 259 271 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF480-203 - 535 1.5e-22 79.1 79.1 4 13 0.0006 0.29 11.2 0.9 2 12 287 297 287 298 0.95 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF480-203 - 535 1.5e-22 79.1 79.1 5 13 0.005 2.4 8.2 0.7 2 12 315 325 315 333 0.92 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF480-203 - 535 1.5e-22 79.1 79.1 6 13 0.0018 0.89 9.6 0.1 2 11 343 352 343 358 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF480-203 - 535 1.5e-22 79.1 79.1 7 13 0.0022 1.1 9.4 0.7 2 11 371 380 371 381 0.97 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF480-203 - 535 1.5e-22 79.1 79.1 8 13 0.77 3.7e+02 1.3 0.1 19 26 384 391 383 392 0.85 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF480-203 - 535 1.5e-22 79.1 79.1 9 13 4.1e-06 0.002 18.1 0.3 2 24 399 421 399 424 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF480-203 - 535 1.5e-22 79.1 79.1 10 13 0.00012 0.058 13.4 0.7 2 21 427 446 427 449 0.92 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF480-203 - 535 1.5e-22 79.1 79.1 11 13 0.0014 0.66 10.0 1.0 2 12 455 465 455 478 0.82 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF480-203 - 535 1.5e-22 79.1 79.1 12 13 2.1e-05 0.0099 15.9 0.6 2 24 483 505 483 507 0.87 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF480-203 - 535 1.5e-22 79.1 79.1 13 13 0.00084 0.4 10.7 0.2 2 13 511 522 511 530 0.90 C2H2-type zinc finger Zn-ribbon_8 PF09723.10 40 ZNF480-203 - 535 1.6e-19 69.7 54.0 1 10 0.93 4.5e+02 1.1 0.0 6 20 203 217 202 224 0.82 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF480-203 - 535 1.6e-19 69.7 54.0 2 10 0.00031 0.15 12.2 3.6 6 34 231 266 230 266 0.90 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF480-203 - 535 1.6e-19 69.7 54.0 3 10 3.7e-05 0.018 15.2 3.0 6 34 259 294 258 296 0.91 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF480-203 - 535 1.6e-19 69.7 54.0 4 10 8.5e-06 0.0041 17.2 4.2 6 34 287 322 286 327 0.88 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF480-203 - 535 1.6e-19 69.7 54.0 5 10 0.0092 4.4 7.5 0.4 6 17 315 326 313 331 0.86 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF480-203 - 535 1.6e-19 69.7 54.0 6 10 4.8e-05 0.023 14.8 2.8 6 34 343 378 342 382 0.93 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF480-203 - 535 1.6e-19 69.7 54.0 7 10 1.8e-05 0.0089 16.1 3.7 6 35 399 435 398 438 0.84 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF480-203 - 535 1.6e-19 69.7 54.0 8 10 0.00024 0.12 12.6 4.3 6 37 427 465 426 468 0.83 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF480-203 - 535 1.6e-19 69.7 54.0 9 10 0.014 6.7 6.9 0.4 6 16 455 465 454 477 0.84 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF480-203 - 535 1.6e-19 69.7 54.0 10 10 9.7e-07 0.00047 20.2 2.1 6 39 483 523 482 524 0.87 Zinc ribbon domain zf-C2H2_11 PF16622.5 29 ZNF480-203 - 535 4.6e-18 64.7 39.1 1 11 0.018 8.8 6.2 0.9 5 26 231 252 228 253 0.93 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF480-203 - 535 4.6e-18 64.7 39.1 2 11 0.061 29 4.5 0.1 5 26 259 280 256 281 0.91 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF480-203 - 535 4.6e-18 64.7 39.1 3 11 0.0015 0.74 9.6 0.0 6 26 288 308 285 309 0.93 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF480-203 - 535 4.6e-18 64.7 39.1 4 11 0.00031 0.15 11.9 0.0 5 26 315 336 311 337 0.92 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF480-203 - 535 4.6e-18 64.7 39.1 5 11 0.064 31 4.4 0.0 5 26 343 364 340 365 0.87 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF480-203 - 535 4.6e-18 64.7 39.1 6 11 0.11 52 3.7 0.1 5 26 371 392 368 393 0.82 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF480-203 - 535 4.6e-18 64.7 39.1 7 11 0.0015 0.73 9.7 0.1 5 26 399 420 396 421 0.93 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF480-203 - 535 4.6e-18 64.7 39.1 8 11 0.0028 1.3 8.8 0.0 5 26 427 448 424 449 0.92 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF480-203 - 535 4.6e-18 64.7 39.1 9 11 0.0012 0.57 10.0 0.4 5 26 455 476 452 477 0.93 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF480-203 - 535 4.6e-18 64.7 39.1 10 11 0.002 0.98 9.2 0.2 5 26 483 504 481 505 0.94 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF480-203 - 535 4.6e-18 64.7 39.1 11 11 0.012 5.8 6.8 0.0 5 26 511 532 508 533 0.86 zinc-finger C2H2-type zf-C2HE PF16278.5 64 ZNF480-203 - 535 4.5e-10 39.8 59.1 1 11 0.034 16 6.0 4.6 21 57 211 249 157 255 0.73 C2HE / C2H2 / C2HC zinc-binding finger zf-C2HE PF16278.5 64 ZNF480-203 - 535 4.5e-10 39.8 59.1 2 11 0.27 1.3e+02 3.1 1.0 35 47 256 268 244 275 0.82 C2HE / C2H2 / C2HC zinc-binding finger zf-C2HE PF16278.5 64 ZNF480-203 - 535 4.5e-10 39.8 59.1 3 11 0.022 11 6.6 0.5 34 50 283 299 271 305 0.81 C2HE / C2H2 / C2HC zinc-binding finger zf-C2HE PF16278.5 64 ZNF480-203 - 535 4.5e-10 39.8 59.1 4 11 0.041 20 5.7 0.5 34 48 311 325 300 333 0.79 C2HE / C2H2 / C2HC zinc-binding finger zf-C2HE PF16278.5 64 ZNF480-203 - 535 4.5e-10 39.8 59.1 5 11 0.28 1.4e+02 3.1 0.1 35 57 340 361 328 368 0.80 C2HE / C2H2 / C2HC zinc-binding finger zf-C2HE PF16278.5 64 ZNF480-203 - 535 4.5e-10 39.8 59.1 6 11 0.018 8.8 6.9 0.8 35 62 368 390 354 392 0.80 C2HE / C2H2 / C2HC zinc-binding finger zf-C2HE PF16278.5 64 ZNF480-203 - 535 4.5e-10 39.8 59.1 7 11 0.0011 0.55 10.7 0.4 36 57 397 417 393 422 0.91 C2HE / C2H2 / C2HC zinc-binding finger zf-C2HE PF16278.5 64 ZNF480-203 - 535 4.5e-10 39.8 59.1 8 11 0.0052 2.5 8.6 0.1 36 61 425 449 420 452 0.89 C2HE / C2H2 / C2HC zinc-binding finger zf-C2HE PF16278.5 64 ZNF480-203 - 535 4.5e-10 39.8 59.1 9 11 0.48 2.3e+02 2.3 1.1 36 51 453 468 449 477 0.83 C2HE / C2H2 / C2HC zinc-binding finger zf-C2HE PF16278.5 64 ZNF480-203 - 535 4.5e-10 39.8 59.1 10 11 0.00042 0.2 12.1 0.5 35 61 480 505 466 508 0.83 C2HE / C2H2 / C2HC zinc-binding finger zf-C2HE PF16278.5 64 ZNF480-203 - 535 4.5e-10 39.8 59.1 11 11 0.009 4.3 7.8 0.1 36 59 509 531 505 534 0.84 C2HE / C2H2 / C2HC zinc-binding finger zf-C2H2_jaz PF12171.8 27 ZNF480-203 - 535 5.8e-10 39.2 48.0 1 11 0.043 21 5.6 0.8 2 22 231 251 230 251 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF480-203 - 535 5.8e-10 39.2 48.0 2 11 0.065 31 5.0 0.4 2 21 259 278 258 279 0.88 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF480-203 - 535 5.8e-10 39.2 48.0 3 11 0.0024 1.2 9.5 0.2 2 22 287 307 286 307 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF480-203 - 535 5.8e-10 39.2 48.0 4 11 0.00096 0.46 10.8 0.1 2 22 315 335 314 335 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF480-203 - 535 5.8e-10 39.2 48.0 5 11 0.037 18 5.8 0.1 2 22 343 363 342 363 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF480-203 - 535 5.8e-10 39.2 48.0 6 11 0.032 16 6.0 0.4 2 22 371 391 370 391 0.91 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF480-203 - 535 5.8e-10 39.2 48.0 7 11 0.15 74 3.8 0.1 2 20 399 417 398 419 0.80 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF480-203 - 535 5.8e-10 39.2 48.0 8 11 0.79 3.8e+02 1.5 0.1 2 12 427 437 426 446 0.80 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF480-203 - 535 5.8e-10 39.2 48.0 9 11 0.0055 2.7 8.4 0.2 2 22 455 475 454 475 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF480-203 - 535 5.8e-10 39.2 48.0 10 11 0.024 12 6.3 0.2 2 22 483 503 482 503 0.90 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF480-203 - 535 5.8e-10 39.2 48.0 11 11 0.039 19 5.7 0.1 2 21 511 530 510 531 0.91 Zinc-finger double-stranded RNA-binding XPA_N PF01286.18 32 ZNF480-203 - 535 7.5e-10 38.7 35.6 1 11 0.57 2.8e+02 1.7 0.1 3 12 232 241 230 249 0.83 XPA protein N-terminal XPA_N PF01286.18 32 ZNF480-203 - 535 7.5e-10 38.7 35.6 2 11 2.5 1.2e+03 -0.3 0.2 3 9 260 266 258 269 0.60 XPA protein N-terminal XPA_N PF01286.18 32 ZNF480-203 - 535 7.5e-10 38.7 35.6 3 11 0.013 6.4 6.9 0.1 3 17 288 303 286 305 0.79 XPA protein N-terminal XPA_N PF01286.18 32 ZNF480-203 - 535 7.5e-10 38.7 35.6 4 11 0.025 12 6.1 0.1 3 12 316 325 314 335 0.81 XPA protein N-terminal XPA_N PF01286.18 32 ZNF480-203 - 535 7.5e-10 38.7 35.6 5 11 0.0079 3.8 7.6 0.1 3 11 344 352 342 357 0.91 XPA protein N-terminal XPA_N PF01286.18 32 ZNF480-203 - 535 7.5e-10 38.7 35.6 6 11 0.051 25 5.0 0.0 3 12 372 381 370 392 0.77 XPA protein N-terminal XPA_N PF01286.18 32 ZNF480-203 - 535 7.5e-10 38.7 35.6 7 11 0.093 45 4.2 0.1 3 12 400 409 398 412 0.87 XPA protein N-terminal XPA_N PF01286.18 32 ZNF480-203 - 535 7.5e-10 38.7 35.6 8 11 0.022 11 6.2 0.2 3 12 428 437 426 439 0.89 XPA protein N-terminal XPA_N PF01286.18 32 ZNF480-203 - 535 7.5e-10 38.7 35.6 9 11 0.037 18 5.5 0.2 3 11 456 464 454 467 0.89 XPA protein N-terminal XPA_N PF01286.18 32 ZNF480-203 - 535 7.5e-10 38.7 35.6 10 11 0.12 57 3.9 0.1 3 11 484 492 482 494 0.87 XPA protein N-terminal XPA_N PF01286.18 32 ZNF480-203 - 535 7.5e-10 38.7 35.6 11 11 0.003 1.5 9.0 0.0 3 19 512 529 510 532 0.81 XPA protein N-terminal C1_1 PF00130.22 53 ZNF480-203 - 535 1.4e-09 37.7 43.2 1 10 0.01 4.9 7.1 4.0 5 36 224 266 221 268 0.79 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF480-203 - 535 1.4e-09 37.7 43.2 2 10 0.057 28 4.7 3.7 9 37 256 295 249 299 0.77 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF480-203 - 535 1.4e-09 37.7 43.2 3 10 0.026 13 5.8 3.2 4 36 280 322 273 327 0.80 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF480-203 - 535 1.4e-09 37.7 43.2 4 10 0.0003 0.14 12.0 0.8 2 37 333 379 333 380 0.85 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF480-203 - 535 1.4e-09 37.7 43.2 5 10 0.0021 1 9.3 2.3 8 38 367 408 358 410 0.78 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF480-203 - 535 1.4e-09 37.7 43.2 6 10 0.00024 0.11 12.3 1.7 2 36 389 434 388 436 0.89 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF480-203 - 535 1.4e-09 37.7 43.2 7 10 0.0012 0.58 10.1 1.2 7 38 423 464 416 468 0.82 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF480-203 - 535 1.4e-09 37.7 43.2 8 10 0.0025 1.2 9.1 1.6 6 37 449 491 445 493 0.82 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF480-203 - 535 1.4e-09 37.7 43.2 9 10 0.0031 1.5 8.7 1.6 5 36 477 518 473 522 0.79 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF480-203 - 535 1.4e-09 37.7 43.2 10 10 0.056 27 4.7 0.1 7 22 506 521 497 531 0.75 Phorbol esters/diacylglycerol binding domain (C1 domain) zf_UBZ PF18439.1 32 ZNF480-203 - 535 1.6e-09 37.1 37.6 1 11 0.018 8.8 6.0 0.1 3 20 231 249 229 249 0.91 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF480-203 - 535 1.6e-09 37.1 37.6 2 11 0.46 2.2e+02 1.5 0.1 3 14 259 270 257 278 0.78 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF480-203 - 535 1.6e-09 37.1 37.6 3 11 0.026 13 5.5 0.1 3 15 287 299 285 306 0.83 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF480-203 - 535 1.6e-09 37.1 37.6 4 11 0.038 19 5.0 0.1 3 15 315 327 313 333 0.80 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF480-203 - 535 1.6e-09 37.1 37.6 5 11 0.016 7.8 6.2 0.1 3 12 343 352 341 357 0.88 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF480-203 - 535 1.6e-09 37.1 37.6 6 11 0.019 9.3 5.9 0.2 3 16 371 385 369 389 0.78 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF480-203 - 535 1.6e-09 37.1 37.6 7 11 0.04 20 4.9 0.1 3 13 399 409 397 417 0.85 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF480-203 - 535 1.6e-09 37.1 37.6 8 11 0.017 8.3 6.1 0.0 3 14 427 438 425 446 0.83 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF480-203 - 535 1.6e-09 37.1 37.6 9 11 0.0091 4.4 7.0 0.2 3 18 455 471 453 474 0.75 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF480-203 - 535 1.6e-09 37.1 37.6 10 11 0.064 31 4.3 0.1 3 12 483 492 481 498 0.89 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF480-203 - 535 1.6e-09 37.1 37.6 11 11 0.044 21 4.8 0.1 3 13 511 521 509 529 0.85 Ubiquitin-Binding Zinc Finger DZR PF12773.7 49 ZNF480-203 - 535 6.1e-08 32.6 41.9 1 4 0.01 4.9 7.3 9.1 14 49 232 293 203 305 0.86 Double zinc ribbon DZR PF12773.7 49 ZNF480-203 - 535 6.1e-08 32.6 41.9 2 4 0.008 3.9 7.6 5.4 1 35 289 349 278 355 0.53 Double zinc ribbon DZR PF12773.7 49 ZNF480-203 - 535 6.1e-08 32.6 41.9 3 4 0.12 56 3.9 12.2 15 48 373 432 344 470 0.50 Double zinc ribbon DZR PF12773.7 49 ZNF480-203 - 535 6.1e-08 32.6 41.9 4 4 0.0044 2.1 8.4 6.3 1 37 457 519 457 524 0.84 Double zinc ribbon # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF480-203.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF480-203.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF480-203.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF480-203.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF480-203.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:07:11 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZNF480-204 - 366 6.1e-94 304.6 81.5 1 12 0.014 6.6 7.3 0.4 7 18 26 37 25 43 0.87 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF480-204 - 366 6.1e-94 304.6 81.5 2 12 1e-09 4.6e-07 30.0 0.7 1 25 48 72 48 73 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF480-204 - 366 6.1e-94 304.6 81.5 3 12 2.5e-10 1.2e-07 31.9 3.2 1 25 76 100 76 101 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF480-204 - 366 6.1e-94 304.6 81.5 4 12 7e-11 3.2e-08 33.6 0.8 1 26 104 129 104 129 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF480-204 - 366 6.1e-94 304.6 81.5 5 12 9.2e-09 4.2e-06 26.9 1.5 2 26 133 157 132 157 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF480-204 - 366 6.1e-94 304.6 81.5 6 12 6.1e-07 0.00028 21.2 0.2 9 24 168 183 160 185 0.83 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF480-204 - 366 6.1e-94 304.6 81.5 7 12 1.8e-11 8.3e-09 35.5 0.4 2 24 189 211 189 213 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF480-204 - 366 6.1e-94 304.6 81.5 8 12 8.3e-10 3.8e-07 30.2 0.6 1 25 216 240 216 241 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF480-204 - 366 6.1e-94 304.6 81.5 9 12 3e-12 1.4e-09 38.0 0.5 1 25 244 268 244 269 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF480-204 - 366 6.1e-94 304.6 81.5 10 12 5.1e-11 2.4e-08 34.1 0.4 1 26 272 297 272 297 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF480-204 - 366 6.1e-94 304.6 81.5 11 12 5.9e-11 2.7e-08 33.9 0.5 1 25 300 324 300 325 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF480-204 - 366 6.1e-94 304.6 81.5 12 12 1.9e-11 8.6e-09 35.4 2.4 1 25 328 352 328 353 0.95 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZNF480-204 - 366 1.3e-73 239.5 77.6 1 12 0.0023 1 9.9 0.3 6 23 36 56 33 56 0.85 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF480-204 - 366 1.3e-73 239.5 77.6 2 12 8.7e-07 0.0004 20.7 4.1 1 23 62 84 62 84 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF480-204 - 366 1.3e-73 239.5 77.6 3 12 1.2e-09 5.7e-07 29.6 1.2 1 23 90 112 90 112 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF480-204 - 366 1.3e-73 239.5 77.6 4 12 7.5e-10 3.4e-07 30.3 0.4 1 23 118 140 118 140 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF480-204 - 366 1.3e-73 239.5 77.6 5 12 8.4e-08 3.8e-05 23.9 0.3 1 21 146 166 146 167 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF480-204 - 366 1.3e-73 239.5 77.6 6 12 6.9e-08 3.2e-05 24.1 0.2 1 23 174 196 174 196 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF480-204 - 366 1.3e-73 239.5 77.6 7 12 4.5e-09 2.1e-06 27.9 0.6 1 23 202 224 202 224 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF480-204 - 366 1.3e-73 239.5 77.6 8 12 6.3e-10 2.9e-07 30.6 0.6 1 23 230 252 230 252 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF480-204 - 366 1.3e-73 239.5 77.6 9 12 1.9e-06 0.00085 19.6 0.1 1 23 258 280 258 280 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF480-204 - 366 1.3e-73 239.5 77.6 10 12 9.5e-08 4.4e-05 23.7 2.6 1 23 286 308 286 308 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF480-204 - 366 1.3e-73 239.5 77.6 11 12 1.8e-08 8.1e-06 26.0 1.1 1 23 314 336 314 336 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF480-204 - 366 1.3e-73 239.5 77.6 12 12 2.4e-07 0.00011 22.4 0.2 1 23 342 364 342 364 0.96 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZNF480-204 - 366 2.4e-43 143.0 76.1 1 12 0.034 16 6.7 0.4 1 23 34 56 34 57 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF480-204 - 366 2.4e-43 143.0 76.1 2 12 7.3e-05 0.033 15.0 3.5 1 23 62 84 62 85 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF480-204 - 366 2.4e-43 143.0 76.1 3 12 5.5e-06 0.0025 18.5 0.8 1 23 90 112 90 113 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF480-204 - 366 2.4e-43 143.0 76.1 4 12 3.5e-06 0.0016 19.1 0.2 1 23 118 140 118 141 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF480-204 - 366 2.4e-43 143.0 76.1 5 12 2.1e-05 0.0099 16.6 0.5 1 21 146 166 146 168 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF480-204 - 366 2.4e-43 143.0 76.1 6 12 0.00017 0.079 13.8 0.2 1 23 174 196 174 197 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF480-204 - 366 2.4e-43 143.0 76.1 7 12 8.8e-06 0.004 17.9 0.7 1 23 202 224 202 225 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF480-204 - 366 2.4e-43 143.0 76.1 8 12 6.9e-06 0.0032 18.2 0.4 1 23 230 252 230 253 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF480-204 - 366 2.4e-43 143.0 76.1 9 12 7.4e-06 0.0034 18.1 0.1 1 23 258 280 258 281 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF480-204 - 366 2.4e-43 143.0 76.1 10 12 0.00012 0.055 14.3 1.9 1 23 286 308 286 309 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF480-204 - 366 2.4e-43 143.0 76.1 11 12 7e-06 0.0032 18.2 0.8 1 23 314 336 314 337 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF480-204 - 366 2.4e-43 143.0 76.1 12 12 2.8e-05 0.013 16.3 0.3 1 23 342 364 342 365 0.95 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF480-204 - 366 3.4e-24 84.3 81.5 1 13 0.96 4.4e+02 1.0 0.3 2 20 34 52 34 56 0.84 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF480-204 - 366 3.4e-24 84.3 81.5 2 13 0.0037 1.7 8.7 2.3 2 13 62 73 62 82 0.89 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF480-204 - 366 3.4e-24 84.3 81.5 3 13 0.0003 0.14 12.2 1.1 2 13 90 101 90 102 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF480-204 - 366 3.4e-24 84.3 81.5 4 13 0.00042 0.19 11.8 0.9 2 12 118 128 118 129 0.95 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF480-204 - 366 3.4e-24 84.3 81.5 5 13 0.0035 1.6 8.8 0.7 2 12 146 156 146 164 0.92 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF480-204 - 366 3.4e-24 84.3 81.5 6 13 0.0013 0.57 10.2 0.1 2 11 174 183 174 190 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF480-204 - 366 3.4e-24 84.3 81.5 7 13 0.0015 0.7 10.0 0.7 2 11 202 211 202 212 0.97 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF480-204 - 366 3.4e-24 84.3 81.5 8 13 0.53 2.5e+02 1.8 0.1 19 26 215 222 214 223 0.85 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF480-204 - 366 3.4e-24 84.3 81.5 9 13 2.7e-06 0.0012 18.7 0.3 2 24 230 252 230 255 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF480-204 - 366 3.4e-24 84.3 81.5 10 13 8e-05 0.037 14.0 0.7 2 21 258 277 258 280 0.92 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF480-204 - 366 3.4e-24 84.3 81.5 11 13 0.00093 0.43 10.6 1.0 2 12 286 296 286 309 0.82 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF480-204 - 366 3.4e-24 84.3 81.5 12 13 3.9e-05 0.018 15.0 2.1 2 24 314 336 314 338 0.87 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF480-204 - 366 3.4e-24 84.3 81.5 13 13 0.00056 0.26 11.3 0.2 2 13 342 353 342 362 0.90 C2H2-type zinc finger Zn-ribbon_8 PF09723.10 40 ZNF480-204 - 366 4.4e-21 74.7 54.6 1 10 0.63 2.9e+02 1.7 0.0 6 20 34 48 33 55 0.82 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF480-204 - 366 4.4e-21 74.7 54.6 2 10 0.0002 0.09 12.9 3.6 6 34 62 97 61 97 0.90 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF480-204 - 366 4.4e-21 74.7 54.6 3 10 5.2e-05 0.024 14.8 3.8 6 34 90 125 89 125 0.92 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF480-204 - 366 4.4e-21 74.7 54.6 4 10 5.3e-06 0.0024 17.9 4.2 6 34 118 153 117 159 0.88 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF480-204 - 366 4.4e-21 74.7 54.6 5 10 3.2e-05 0.015 15.4 2.8 6 34 174 209 173 213 0.93 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF480-204 - 366 4.4e-21 74.7 54.6 6 10 0.0084 3.9 7.7 0.7 6 15 202 211 199 217 0.92 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF480-204 - 366 4.4e-21 74.7 54.6 7 10 1.3e-05 0.0059 16.7 3.8 6 35 230 266 229 269 0.84 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF480-204 - 366 4.4e-21 74.7 54.6 8 10 0.00021 0.096 12.8 4.8 6 37 258 296 257 299 0.83 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF480-204 - 366 4.4e-21 74.7 54.6 9 10 0.0095 4.3 7.5 0.4 6 16 286 296 285 308 0.84 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF480-204 - 366 4.4e-21 74.7 54.6 10 10 6.7e-07 0.00031 20.8 2.2 6 39 314 354 313 355 0.87 Zinc ribbon domain zf-C2H2_11 PF16622.5 29 ZNF480-204 - 366 3.9e-20 71.3 39.1 1 12 7.2 3.3e+03 -2.1 0.2 18 26 47 55 43 56 0.78 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF480-204 - 366 3.9e-20 71.3 39.1 2 12 0.012 5.6 6.8 0.9 5 26 62 83 59 84 0.93 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF480-204 - 366 3.9e-20 71.3 39.1 3 12 0.04 19 5.2 0.1 5 26 90 111 87 112 0.91 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF480-204 - 366 3.9e-20 71.3 39.1 4 12 0.001 0.47 10.3 0.0 6 26 119 139 116 140 0.93 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF480-204 - 366 3.9e-20 71.3 39.1 5 12 0.00021 0.094 12.5 0.0 5 26 146 167 142 168 0.92 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF480-204 - 366 3.9e-20 71.3 39.1 6 12 0.043 20 5.1 0.0 5 26 174 195 171 196 0.87 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF480-204 - 366 3.9e-20 71.3 39.1 7 12 0.071 33 4.4 0.1 5 26 202 223 199 224 0.82 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF480-204 - 366 3.9e-20 71.3 39.1 8 12 0.001 0.46 10.3 0.1 5 26 230 251 227 252 0.93 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF480-204 - 366 3.9e-20 71.3 39.1 9 12 0.0019 0.85 9.4 0.0 5 26 258 279 255 280 0.92 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF480-204 - 366 3.9e-20 71.3 39.1 10 12 0.00078 0.36 10.6 0.4 5 26 286 307 283 308 0.93 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF480-204 - 366 3.9e-20 71.3 39.1 11 12 0.0014 0.62 9.9 0.2 5 26 314 335 312 336 0.94 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF480-204 - 366 3.9e-20 71.3 39.1 12 12 0.008 3.7 7.4 0.0 5 26 342 363 339 364 0.86 zinc-finger C2H2-type XPA_N PF01286.18 32 ZNF480-204 - 366 1e-11 44.6 35.8 1 11 0.39 1.8e+02 2.3 0.1 3 12 63 72 61 80 0.83 XPA protein N-terminal XPA_N PF01286.18 32 ZNF480-204 - 366 1e-11 44.6 35.8 2 11 1.5 7.1e+02 0.4 0.2 3 9 91 97 88 100 0.59 XPA protein N-terminal XPA_N PF01286.18 32 ZNF480-204 - 366 1e-11 44.6 35.8 3 11 0.009 4.1 7.5 0.1 3 17 119 134 117 136 0.79 XPA protein N-terminal XPA_N PF01286.18 32 ZNF480-204 - 366 1e-11 44.6 35.8 4 11 0.017 7.7 6.7 0.1 3 12 147 156 145 166 0.81 XPA protein N-terminal XPA_N PF01286.18 32 ZNF480-204 - 366 1e-11 44.6 35.8 5 11 0.0054 2.5 8.2 0.1 3 11 175 183 173 188 0.91 XPA protein N-terminal XPA_N PF01286.18 32 ZNF480-204 - 366 1e-11 44.6 35.8 6 11 0.035 16 5.6 0.0 3 12 203 212 201 223 0.77 XPA protein N-terminal XPA_N PF01286.18 32 ZNF480-204 - 366 1e-11 44.6 35.8 7 11 0.064 29 4.8 0.1 3 12 231 240 229 243 0.87 XPA protein N-terminal XPA_N PF01286.18 32 ZNF480-204 - 366 1e-11 44.6 35.8 8 11 0.015 7.1 6.8 0.2 3 12 259 268 257 270 0.89 XPA protein N-terminal XPA_N PF01286.18 32 ZNF480-204 - 366 1e-11 44.6 35.8 9 11 0.026 12 6.1 0.2 3 11 287 295 285 298 0.89 XPA protein N-terminal XPA_N PF01286.18 32 ZNF480-204 - 366 1e-11 44.6 35.8 10 11 0.082 38 4.5 0.1 3 11 315 323 313 325 0.87 XPA protein N-terminal XPA_N PF01286.18 32 ZNF480-204 - 366 1e-11 44.6 35.8 11 11 0.002 0.93 9.6 0.0 3 19 343 360 341 363 0.81 XPA protein N-terminal zf-C2HE PF16278.5 64 ZNF480-204 - 366 1.2e-11 44.9 60.6 1 10 0.027 13 6.4 5.0 19 57 40 80 10 86 0.66 C2HE / C2H2 / C2HC zinc-binding finger zf-C2HE PF16278.5 64 ZNF480-204 - 366 1.2e-11 44.9 60.6 2 10 0.15 68 4.0 0.6 35 47 87 99 77 107 0.84 C2HE / C2H2 / C2HC zinc-binding finger zf-C2HE PF16278.5 64 ZNF480-204 - 366 1.2e-11 44.9 60.6 3 10 0.013 6.1 7.4 0.5 32 50 113 130 100 136 0.80 C2HE / C2H2 / C2HC zinc-binding finger zf-C2HE PF16278.5 64 ZNF480-204 - 366 1.2e-11 44.9 60.6 4 10 0.18 83 3.7 3.6 34 49 142 157 130 199 0.79 C2HE / C2H2 / C2HC zinc-binding finger zf-C2HE PF16278.5 64 ZNF480-204 - 366 1.2e-11 44.9 60.6 5 10 0.023 10 6.6 1.4 35 62 199 221 190 223 0.82 C2HE / C2H2 / C2HC zinc-binding finger zf-C2HE PF16278.5 64 ZNF480-204 - 366 1.2e-11 44.9 60.6 6 10 0.00071 0.33 11.4 0.3 36 57 228 248 224 254 0.91 C2HE / C2H2 / C2HC zinc-binding finger zf-C2HE PF16278.5 64 ZNF480-204 - 366 1.2e-11 44.9 60.6 7 10 0.0034 1.6 9.3 0.1 36 61 256 280 251 283 0.89 C2HE / C2H2 / C2HC zinc-binding finger zf-C2HE PF16278.5 64 ZNF480-204 - 366 1.2e-11 44.9 60.6 8 10 0.34 1.6e+02 2.8 1.2 36 51 284 299 280 308 0.83 C2HE / C2H2 / C2HC zinc-binding finger zf-C2HE PF16278.5 64 ZNF480-204 - 366 1.2e-11 44.9 60.6 9 10 0.00026 0.12 12.9 0.4 35 61 311 336 298 339 0.84 C2HE / C2H2 / C2HC zinc-binding finger zf-C2HE PF16278.5 64 ZNF480-204 - 366 1.2e-11 44.9 60.6 10 10 0.0057 2.6 8.5 0.1 36 59 340 362 335 365 0.85 C2HE / C2H2 / C2HC zinc-binding finger zf_UBZ PF18439.1 32 ZNF480-204 - 366 1.6e-11 43.6 37.6 1 11 0.012 5.6 6.6 0.1 3 20 62 80 60 80 0.91 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF480-204 - 366 1.6e-11 43.6 37.6 2 11 0.31 1.4e+02 2.1 0.1 3 14 90 101 88 109 0.78 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF480-204 - 366 1.6e-11 43.6 37.6 3 11 0.018 8.1 6.1 0.1 3 15 118 130 116 137 0.83 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF480-204 - 366 1.6e-11 43.6 37.6 4 11 0.026 12 5.6 0.1 3 15 146 158 144 164 0.80 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF480-204 - 366 1.6e-11 43.6 37.6 5 11 0.011 5.1 6.8 0.1 3 12 174 183 172 188 0.88 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF480-204 - 366 1.6e-11 43.6 37.6 6 11 0.013 6 6.6 0.2 3 17 202 217 200 220 0.78 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF480-204 - 366 1.6e-11 43.6 37.6 7 11 0.027 13 5.5 0.1 3 13 230 240 228 248 0.85 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF480-204 - 366 1.6e-11 43.6 37.6 8 11 0.012 5.3 6.7 0.0 3 15 258 270 256 277 0.83 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF480-204 - 366 1.6e-11 43.6 37.6 9 11 0.0062 2.8 7.6 0.2 3 18 286 302 284 305 0.75 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF480-204 - 366 1.6e-11 43.6 37.6 10 11 0.044 20 4.9 0.1 3 12 314 323 312 329 0.89 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF480-204 - 366 1.6e-11 43.6 37.6 11 11 0.03 14 5.4 0.1 3 13 342 352 340 360 0.85 Ubiquitin-Binding Zinc Finger zf-C2H2_jaz PF12171.8 27 ZNF480-204 - 366 2.8e-11 43.4 50.4 1 11 0.029 13 6.2 0.8 2 22 62 82 61 82 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF480-204 - 366 2.8e-11 43.4 50.4 2 11 0.044 20 5.6 0.4 2 21 90 109 89 110 0.88 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF480-204 - 366 2.8e-11 43.4 50.4 3 11 0.0016 0.74 10.2 0.2 2 22 118 138 117 138 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF480-204 - 366 2.8e-11 43.4 50.4 4 11 0.00064 0.3 11.4 0.1 2 22 146 166 145 166 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF480-204 - 366 2.8e-11 43.4 50.4 5 11 0.025 11 6.4 0.1 2 22 174 194 173 194 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF480-204 - 366 2.8e-11 43.4 50.4 6 11 0.022 9.9 6.6 0.4 2 22 202 222 201 222 0.91 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF480-204 - 366 2.8e-11 43.4 50.4 7 11 0.1 48 4.4 0.1 2 20 230 248 229 250 0.80 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF480-204 - 366 2.8e-11 43.4 50.4 8 11 0.53 2.5e+02 2.1 0.1 2 12 258 268 257 277 0.80 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF480-204 - 366 2.8e-11 43.4 50.4 9 11 0.0037 1.7 9.0 0.2 2 22 286 306 285 306 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF480-204 - 366 2.8e-11 43.4 50.4 10 11 0.016 7.6 7.0 0.2 2 22 314 334 313 334 0.90 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF480-204 - 366 2.8e-11 43.4 50.4 11 11 0.026 12 6.3 0.1 2 21 342 361 341 362 0.91 Zinc-finger double-stranded RNA-binding C1_1 PF00130.22 53 ZNF480-204 - 366 1.9e-10 40.5 45.9 1 11 0.007 3.2 7.7 4.1 5 36 55 97 52 99 0.79 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF480-204 - 366 1.9e-10 40.5 45.9 2 11 0.048 22 5.0 4.1 9 37 87 126 80 130 0.78 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF480-204 - 366 1.9e-10 40.5 45.9 3 11 0.025 11 5.9 2.5 3 35 110 152 108 152 0.80 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF480-204 - 366 1.9e-10 40.5 45.9 4 11 0.041 19 5.3 0.5 5 24 140 158 136 162 0.74 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF480-204 - 366 1.9e-10 40.5 45.9 5 11 0.00022 0.1 12.5 1.1 2 37 164 210 164 214 0.86 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF480-204 - 366 1.9e-10 40.5 45.9 6 11 0.0026 1.2 9.1 2.7 8 37 198 238 191 239 0.77 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF480-204 - 366 1.9e-10 40.5 45.9 7 11 0.0002 0.092 12.7 2.1 2 36 220 265 219 267 0.89 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF480-204 - 366 1.9e-10 40.5 45.9 8 11 0.00097 0.44 10.5 1.5 7 38 254 295 247 298 0.82 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF480-204 - 366 1.9e-10 40.5 45.9 9 11 0.0017 0.8 9.6 1.7 6 37 280 322 276 324 0.82 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF480-204 - 366 1.9e-10 40.5 45.9 10 11 0.0034 1.5 8.7 2.2 5 36 308 349 304 351 0.79 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF480-204 - 366 1.9e-10 40.5 45.9 11 11 0.039 18 5.3 0.2 7 22 337 352 328 362 0.75 Phorbol esters/diacylglycerol binding domain (C1 domain) DZR PF12773.7 49 ZNF480-204 - 366 5.3e-09 36.0 42.6 1 1 0.0028 1.3 9.1 6.4 1 37 288 350 288 355 0.84 Double zinc ribbon zf-AN1 PF01428.16 40 ZNF480-204 - 366 2.4e-08 34.0 55.7 1 11 0.0082 3.8 7.8 0.2 11 23 59 71 51 76 0.85 AN1-like Zinc finger zf-AN1 PF01428.16 40 ZNF480-204 - 366 2.4e-08 34.0 55.7 2 11 0.016 7.5 6.8 0.6 5 23 80 99 77 99 0.80 AN1-like Zinc finger zf-AN1 PF01428.16 40 ZNF480-204 - 366 2.4e-08 34.0 55.7 3 11 0.021 9.5 6.5 0.2 12 23 116 127 108 130 0.84 AN1-like Zinc finger zf-AN1 PF01428.16 40 ZNF480-204 - 366 2.4e-08 34.0 55.7 4 11 0.027 13 6.1 0.1 11 23 143 155 136 163 0.85 AN1-like Zinc finger zf-AN1 PF01428.16 40 ZNF480-204 - 366 2.4e-08 34.0 55.7 5 11 0.046 21 5.4 0.3 12 23 172 183 168 183 0.88 AN1-like Zinc finger zf-AN1 PF01428.16 40 ZNF480-204 - 366 2.4e-08 34.0 55.7 6 11 0.012 5.7 7.2 0.2 12 23 200 211 192 216 0.84 AN1-like Zinc finger zf-AN1 PF01428.16 40 ZNF480-204 - 366 2.4e-08 34.0 55.7 7 11 0.02 9.4 6.5 0.2 12 23 228 239 223 239 0.89 AN1-like Zinc finger zf-AN1 PF01428.16 40 ZNF480-204 - 366 2.4e-08 34.0 55.7 8 11 0.039 18 5.6 0.1 12 23 256 267 248 268 0.87 AN1-like Zinc finger zf-AN1 PF01428.16 40 ZNF480-204 - 366 2.4e-08 34.0 55.7 9 11 0.061 28 5.0 0.8 12 23 284 295 278 305 0.86 AN1-like Zinc finger zf-AN1 PF01428.16 40 ZNF480-204 - 366 2.4e-08 34.0 55.7 10 11 0.025 12 6.2 1.3 12 23 312 323 303 337 0.86 AN1-like Zinc finger zf-AN1 PF01428.16 40 ZNF480-204 - 366 2.4e-08 34.0 55.7 11 11 0.064 29 4.9 0.9 12 23 340 351 332 351 0.84 AN1-like Zinc finger YhfH PF14149.6 37 ZNF480-204 - 366 7.3e-08 32.3 43.4 1 11 0.17 80 3.3 0.1 15 23 63 71 60 75 0.85 YhfH-like protein YhfH PF14149.6 37 ZNF480-204 - 366 7.3e-08 32.3 43.4 2 11 0.35 1.6e+02 2.4 0.1 15 23 91 99 85 102 0.86 YhfH-like protein YhfH PF14149.6 37 ZNF480-204 - 366 7.3e-08 32.3 43.4 3 11 0.044 20 5.2 0.1 15 24 119 128 114 133 0.85 YhfH-like protein YhfH PF14149.6 37 ZNF480-204 - 366 7.3e-08 32.3 43.4 4 11 0.12 54 3.9 0.4 15 23 147 155 143 159 0.82 YhfH-like protein YhfH PF14149.6 37 ZNF480-204 - 366 7.3e-08 32.3 43.4 5 11 0.058 27 4.9 0.1 15 23 175 183 169 187 0.85 YhfH-like protein YhfH PF14149.6 37 ZNF480-204 - 366 7.3e-08 32.3 43.4 6 11 0.026 12 6.0 0.2 15 25 203 213 197 216 0.81 YhfH-like protein YhfH PF14149.6 37 ZNF480-204 - 366 7.3e-08 32.3 43.4 7 11 0.012 5.3 7.1 0.1 15 25 231 241 225 244 0.86 YhfH-like protein YhfH PF14149.6 37 ZNF480-204 - 366 7.3e-08 32.3 43.4 8 11 0.012 5.6 7.0 0.2 15 25 259 269 253 271 0.88 YhfH-like protein YhfH PF14149.6 37 ZNF480-204 - 366 7.3e-08 32.3 43.4 9 11 0.047 22 5.2 0.3 15 23 287 295 280 298 0.84 YhfH-like protein YhfH PF14149.6 37 ZNF480-204 - 366 7.3e-08 32.3 43.4 10 11 0.02 9.2 6.3 0.1 15 25 315 325 313 328 0.83 YhfH-like protein YhfH PF14149.6 37 ZNF480-204 - 366 7.3e-08 32.3 43.4 11 11 0.047 22 5.1 0.1 15 23 343 351 337 356 0.85 YhfH-like protein zinc_ribbon_15 PF17032.5 86 ZNF480-204 - 366 1.5e-07 32.0 44.4 1 9 0.004 1.8 9.3 5.2 36 81 60 105 32 108 0.87 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF480-204 - 366 1.5e-07 32.0 44.4 2 9 0.00057 0.26 12.0 3.7 29 78 81 130 77 137 0.88 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF480-204 - 366 1.5e-07 32.0 44.4 3 9 0.015 6.9 7.5 6.3 35 78 115 158 109 184 0.73 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF480-204 - 366 1.5e-07 32.0 44.4 4 9 0.0044 2 9.2 0.8 29 78 165 214 161 219 0.84 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF480-204 - 366 1.5e-07 32.0 44.4 5 9 0.00031 0.14 12.9 1.0 29 77 193 241 184 246 0.87 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF480-204 - 366 1.5e-07 32.0 44.4 6 9 0.00025 0.11 13.2 1.0 29 76 221 268 216 276 0.89 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF480-204 - 366 1.5e-07 32.0 44.4 7 9 0.0063 2.9 8.7 1.0 32 78 252 298 248 302 0.86 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF480-204 - 366 1.5e-07 32.0 44.4 8 9 0.0012 0.55 11.0 0.8 34 75 282 323 275 329 0.84 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF480-204 - 366 1.5e-07 32.0 44.4 9 9 0.0021 0.95 10.3 1.4 32 75 308 351 301 356 0.85 zinc-ribbon family HypA PF01155.19 112 ZNF480-204 - 366 2.3e-07 30.8 36.2 1 6 0.047 21 5.1 7.7 45 93 65 124 30 130 0.54 Hydrogenase/urease nickel incorporation, metallochaperone, hypA HypA PF01155.19 112 ZNF480-204 - 366 2.3e-07 30.8 36.2 2 6 0.0049 2.3 8.3 1.5 64 94 111 153 101 154 0.80 Hydrogenase/urease nickel incorporation, metallochaperone, hypA HypA PF01155.19 112 ZNF480-204 - 366 2.3e-07 30.8 36.2 3 6 0.00032 0.15 12.1 0.3 63 97 138 184 125 188 0.74 Hydrogenase/urease nickel incorporation, metallochaperone, hypA HypA PF01155.19 112 ZNF480-204 - 366 2.3e-07 30.8 36.2 4 6 0.0046 2.1 8.4 3.8 50 95 210 266 190 272 0.68 Hydrogenase/urease nickel incorporation, metallochaperone, hypA HypA PF01155.19 112 ZNF480-204 - 366 2.3e-07 30.8 36.2 5 6 0.0023 1.1 9.4 0.5 65 95 252 294 241 307 0.76 Hydrogenase/urease nickel incorporation, metallochaperone, hypA HypA PF01155.19 112 ZNF480-204 - 366 2.3e-07 30.8 36.2 6 6 0.0017 0.79 9.8 2.8 60 95 275 322 269 356 0.68 Hydrogenase/urease nickel incorporation, metallochaperone, hypA ZZ PF00569.17 45 ZNF480-204 - 366 3.1e-07 30.1 48.8 1 12 9.6 4.4e+03 -2.4 0.0 4 11 33 40 31 47 0.68 Zinc finger, ZZ type ZZ PF00569.17 45 ZNF480-204 - 366 3.1e-07 30.1 48.8 2 12 0.096 44 4.0 0.8 3 12 60 69 58 81 0.84 Zinc finger, ZZ type ZZ PF00569.17 45 ZNF480-204 - 366 3.1e-07 30.1 48.8 3 12 0.035 16 5.4 0.2 3 12 88 97 86 105 0.82 Zinc finger, ZZ type ZZ PF00569.17 45 ZNF480-204 - 366 3.1e-07 30.1 48.8 4 12 0.021 9.4 6.1 0.1 3 14 116 126 114 133 0.74 Zinc finger, ZZ type ZZ PF00569.17 45 ZNF480-204 - 366 3.1e-07 30.1 48.8 5 12 0.029 13 5.7 0.1 3 12 144 153 142 162 0.82 Zinc finger, ZZ type ZZ PF00569.17 45 ZNF480-204 - 366 3.1e-07 30.1 48.8 6 12 0.03 14 5.6 0.1 4 12 173 181 171 186 0.81 Zinc finger, ZZ type ZZ PF00569.17 45 ZNF480-204 - 366 3.1e-07 30.1 48.8 7 12 0.018 8.4 6.3 0.2 3 16 200 212 198 216 0.79 Zinc finger, ZZ type ZZ PF00569.17 45 ZNF480-204 - 366 3.1e-07 30.1 48.8 8 12 0.03 14 5.6 0.1 3 12 228 237 226 243 0.82 Zinc finger, ZZ type ZZ PF00569.17 45 ZNF480-204 - 366 3.1e-07 30.1 48.8 9 12 0.023 11 5.9 0.2 3 12 256 265 254 271 0.82 Zinc finger, ZZ type ZZ PF00569.17 45 ZNF480-204 - 366 3.1e-07 30.1 48.8 10 12 0.34 1.5e+02 2.3 0.2 4 17 285 294 283 299 0.77 Zinc finger, ZZ type ZZ PF00569.17 45 ZNF480-204 - 366 3.1e-07 30.1 48.8 11 12 0.036 17 5.4 0.1 5 14 314 322 311 329 0.81 Zinc finger, ZZ type ZZ PF00569.17 45 ZNF480-204 - 366 3.1e-07 30.1 48.8 12 12 0.014 6.3 6.7 0.1 3 15 340 351 338 359 0.78 Zinc finger, ZZ type # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF480-204.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF480-204.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF480-204.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF480-204.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF480-204.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:07:11 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZNF480-205 - 535 1.3e-91 297.3 81.5 1 12 0.021 10 6.7 0.4 7 18 195 206 194 212 0.87 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF480-205 - 535 1.3e-91 297.3 81.5 2 12 1.5e-09 7.4e-07 29.3 0.7 1 25 217 241 217 242 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF480-205 - 535 1.3e-91 297.3 81.5 3 12 3.9e-10 1.9e-07 31.2 3.2 1 25 245 269 245 270 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF480-205 - 535 1.3e-91 297.3 81.5 4 12 1.1e-10 5.2e-08 33.0 0.8 1 26 273 298 273 298 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF480-205 - 535 1.3e-91 297.3 81.5 5 12 1.4e-08 6.8e-06 26.3 1.5 2 26 302 326 301 326 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF480-205 - 535 1.3e-91 297.3 81.5 6 12 9.2e-07 0.00045 20.5 0.2 10 24 338 352 329 354 0.83 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF480-205 - 535 1.3e-91 297.3 81.5 7 12 2.7e-11 1.3e-08 34.8 0.4 2 24 358 380 358 382 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF480-205 - 535 1.3e-91 297.3 81.5 8 12 1.3e-09 6.1e-07 29.6 0.6 1 25 385 409 385 410 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF480-205 - 535 1.3e-91 297.3 81.5 9 12 4.5e-12 2.2e-09 37.3 0.5 1 25 413 437 413 438 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF480-205 - 535 1.3e-91 297.3 81.5 10 12 7.7e-11 3.8e-08 33.4 0.4 1 26 441 466 441 466 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF480-205 - 535 1.3e-91 297.3 81.5 11 12 8.9e-11 4.3e-08 33.2 0.5 1 25 469 493 469 494 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF480-205 - 535 1.3e-91 297.3 81.5 12 12 2.8e-11 1.4e-08 34.8 2.4 1 25 497 521 497 522 0.95 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZNF480-205 - 535 2.5e-71 232.3 77.6 1 12 0.0034 1.6 9.3 0.3 6 23 205 225 202 225 0.85 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF480-205 - 535 2.5e-71 232.3 77.6 2 12 1.3e-06 0.00064 20.0 4.1 1 23 231 253 231 253 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF480-205 - 535 2.5e-71 232.3 77.6 3 12 1.9e-09 9.1e-07 29.0 1.2 1 23 259 281 259 281 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF480-205 - 535 2.5e-71 232.3 77.6 4 12 1.1e-09 5.4e-07 29.7 0.4 1 23 287 309 287 309 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF480-205 - 535 2.5e-71 232.3 77.6 5 12 1.3e-07 6.1e-05 23.3 0.3 1 21 315 335 315 336 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF480-205 - 535 2.5e-71 232.3 77.6 6 12 1e-07 5.1e-05 23.5 0.2 1 23 343 365 343 365 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF480-205 - 535 2.5e-71 232.3 77.6 7 12 6.8e-09 3.3e-06 27.2 0.6 1 23 371 393 371 393 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF480-205 - 535 2.5e-71 232.3 77.6 8 12 9.5e-10 4.6e-07 29.9 0.6 1 23 399 421 399 421 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF480-205 - 535 2.5e-71 232.3 77.6 9 12 2.8e-06 0.0014 19.0 0.1 1 23 427 449 427 449 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF480-205 - 535 2.5e-71 232.3 77.6 10 12 1.4e-07 7e-05 23.1 2.6 1 23 455 477 455 477 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF480-205 - 535 2.5e-71 232.3 77.6 11 12 2.7e-08 1.3e-05 25.4 1.1 1 23 483 505 483 505 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF480-205 - 535 2.5e-71 232.3 77.6 12 12 3.6e-07 0.00018 21.8 0.2 1 23 511 533 511 533 0.96 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZNF480-205 - 535 4.8e-41 135.9 76.0 1 12 0.051 25 6.1 0.4 1 23 203 225 203 226 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF480-205 - 535 4.8e-41 135.9 76.0 2 12 0.00011 0.053 14.4 3.5 1 23 231 253 231 254 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF480-205 - 535 4.8e-41 135.9 76.0 3 12 8.4e-06 0.0041 17.8 0.8 1 23 259 281 259 282 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF480-205 - 535 4.8e-41 135.9 76.0 4 12 5.4e-06 0.0026 18.5 0.2 1 23 287 309 287 310 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF480-205 - 535 4.8e-41 135.9 76.0 5 12 3.2e-05 0.016 16.0 0.5 1 21 315 335 315 337 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF480-205 - 535 4.8e-41 135.9 76.0 6 12 0.00026 0.13 13.2 0.2 1 23 343 365 343 366 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF480-205 - 535 4.8e-41 135.9 76.0 7 12 1.3e-05 0.0064 17.2 0.7 1 23 371 393 371 394 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF480-205 - 535 4.8e-41 135.9 76.0 8 12 1e-05 0.0051 17.6 0.4 1 23 399 421 399 422 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF480-205 - 535 4.8e-41 135.9 76.0 9 12 1.1e-05 0.0055 17.4 0.1 1 23 427 449 427 450 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF480-205 - 535 4.8e-41 135.9 76.0 10 12 0.00018 0.089 13.7 1.9 1 23 455 477 455 478 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF480-205 - 535 4.8e-41 135.9 76.0 11 12 1.1e-05 0.0051 17.5 0.8 1 23 483 505 483 506 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF480-205 - 535 4.8e-41 135.9 76.0 12 12 4.2e-05 0.02 15.7 0.3 1 23 511 533 511 534 0.95 C2H2-type zinc finger KRAB PF01352.27 42 ZNF480-205 - 535 1.1e-25 89.0 0.0 1 1 3.9e-28 1.9e-25 88.2 0.0 2 42 27 67 26 67 0.98 KRAB box zf-C2H2_6 PF13912.6 27 ZNF480-205 - 535 1.5e-22 79.1 79.1 1 13 1.4 6.9e+02 0.4 0.3 2 20 203 221 203 225 0.83 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF480-205 - 535 1.5e-22 79.1 79.1 2 13 0.0055 2.7 8.1 2.3 2 13 231 242 231 251 0.89 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF480-205 - 535 1.5e-22 79.1 79.1 3 13 0.00044 0.21 11.6 1.1 2 13 259 270 259 271 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF480-205 - 535 1.5e-22 79.1 79.1 4 13 0.0006 0.29 11.2 0.9 2 12 287 297 287 298 0.95 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF480-205 - 535 1.5e-22 79.1 79.1 5 13 0.005 2.4 8.2 0.7 2 12 315 325 315 333 0.92 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF480-205 - 535 1.5e-22 79.1 79.1 6 13 0.0018 0.89 9.6 0.1 2 11 343 352 343 358 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF480-205 - 535 1.5e-22 79.1 79.1 7 13 0.0022 1.1 9.4 0.7 2 11 371 380 371 381 0.97 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF480-205 - 535 1.5e-22 79.1 79.1 8 13 0.77 3.7e+02 1.3 0.1 19 26 384 391 383 392 0.85 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF480-205 - 535 1.5e-22 79.1 79.1 9 13 4.1e-06 0.002 18.1 0.3 2 24 399 421 399 424 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF480-205 - 535 1.5e-22 79.1 79.1 10 13 0.00012 0.058 13.4 0.7 2 21 427 446 427 449 0.92 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF480-205 - 535 1.5e-22 79.1 79.1 11 13 0.0014 0.66 10.0 1.0 2 12 455 465 455 478 0.82 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF480-205 - 535 1.5e-22 79.1 79.1 12 13 2.1e-05 0.0099 15.9 0.6 2 24 483 505 483 507 0.87 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF480-205 - 535 1.5e-22 79.1 79.1 13 13 0.00084 0.4 10.7 0.2 2 13 511 522 511 530 0.90 C2H2-type zinc finger Zn-ribbon_8 PF09723.10 40 ZNF480-205 - 535 1.6e-19 69.7 54.0 1 10 0.93 4.5e+02 1.1 0.0 6 20 203 217 202 224 0.82 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF480-205 - 535 1.6e-19 69.7 54.0 2 10 0.00031 0.15 12.2 3.6 6 34 231 266 230 266 0.90 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF480-205 - 535 1.6e-19 69.7 54.0 3 10 3.7e-05 0.018 15.2 3.0 6 34 259 294 258 296 0.91 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF480-205 - 535 1.6e-19 69.7 54.0 4 10 8.5e-06 0.0041 17.2 4.2 6 34 287 322 286 327 0.88 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF480-205 - 535 1.6e-19 69.7 54.0 5 10 0.0092 4.4 7.5 0.4 6 17 315 326 313 331 0.86 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF480-205 - 535 1.6e-19 69.7 54.0 6 10 4.8e-05 0.023 14.8 2.8 6 34 343 378 342 382 0.93 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF480-205 - 535 1.6e-19 69.7 54.0 7 10 1.8e-05 0.0089 16.1 3.7 6 35 399 435 398 438 0.84 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF480-205 - 535 1.6e-19 69.7 54.0 8 10 0.00024 0.12 12.6 4.3 6 37 427 465 426 468 0.83 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF480-205 - 535 1.6e-19 69.7 54.0 9 10 0.014 6.7 6.9 0.4 6 16 455 465 454 477 0.84 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF480-205 - 535 1.6e-19 69.7 54.0 10 10 9.7e-07 0.00047 20.2 2.1 6 39 483 523 482 524 0.87 Zinc ribbon domain zf-C2H2_11 PF16622.5 29 ZNF480-205 - 535 4.6e-18 64.7 39.1 1 11 0.018 8.8 6.2 0.9 5 26 231 252 228 253 0.93 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF480-205 - 535 4.6e-18 64.7 39.1 2 11 0.061 29 4.5 0.1 5 26 259 280 256 281 0.91 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF480-205 - 535 4.6e-18 64.7 39.1 3 11 0.0015 0.74 9.6 0.0 6 26 288 308 285 309 0.93 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF480-205 - 535 4.6e-18 64.7 39.1 4 11 0.00031 0.15 11.9 0.0 5 26 315 336 311 337 0.92 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF480-205 - 535 4.6e-18 64.7 39.1 5 11 0.064 31 4.4 0.0 5 26 343 364 340 365 0.87 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF480-205 - 535 4.6e-18 64.7 39.1 6 11 0.11 52 3.7 0.1 5 26 371 392 368 393 0.82 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF480-205 - 535 4.6e-18 64.7 39.1 7 11 0.0015 0.73 9.7 0.1 5 26 399 420 396 421 0.93 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF480-205 - 535 4.6e-18 64.7 39.1 8 11 0.0028 1.3 8.8 0.0 5 26 427 448 424 449 0.92 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF480-205 - 535 4.6e-18 64.7 39.1 9 11 0.0012 0.57 10.0 0.4 5 26 455 476 452 477 0.93 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF480-205 - 535 4.6e-18 64.7 39.1 10 11 0.002 0.98 9.2 0.2 5 26 483 504 481 505 0.94 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF480-205 - 535 4.6e-18 64.7 39.1 11 11 0.012 5.8 6.8 0.0 5 26 511 532 508 533 0.86 zinc-finger C2H2-type zf-C2HE PF16278.5 64 ZNF480-205 - 535 4.5e-10 39.8 59.1 1 11 0.034 16 6.0 4.6 21 57 211 249 157 255 0.73 C2HE / C2H2 / C2HC zinc-binding finger zf-C2HE PF16278.5 64 ZNF480-205 - 535 4.5e-10 39.8 59.1 2 11 0.27 1.3e+02 3.1 1.0 35 47 256 268 244 275 0.82 C2HE / C2H2 / C2HC zinc-binding finger zf-C2HE PF16278.5 64 ZNF480-205 - 535 4.5e-10 39.8 59.1 3 11 0.022 11 6.6 0.5 34 50 283 299 271 305 0.81 C2HE / C2H2 / C2HC zinc-binding finger zf-C2HE PF16278.5 64 ZNF480-205 - 535 4.5e-10 39.8 59.1 4 11 0.041 20 5.7 0.5 34 48 311 325 300 333 0.79 C2HE / C2H2 / C2HC zinc-binding finger zf-C2HE PF16278.5 64 ZNF480-205 - 535 4.5e-10 39.8 59.1 5 11 0.28 1.4e+02 3.1 0.1 35 57 340 361 328 368 0.80 C2HE / C2H2 / C2HC zinc-binding finger zf-C2HE PF16278.5 64 ZNF480-205 - 535 4.5e-10 39.8 59.1 6 11 0.018 8.8 6.9 0.8 35 62 368 390 354 392 0.80 C2HE / C2H2 / C2HC zinc-binding finger zf-C2HE PF16278.5 64 ZNF480-205 - 535 4.5e-10 39.8 59.1 7 11 0.0011 0.55 10.7 0.4 36 57 397 417 393 422 0.91 C2HE / C2H2 / C2HC zinc-binding finger zf-C2HE PF16278.5 64 ZNF480-205 - 535 4.5e-10 39.8 59.1 8 11 0.0052 2.5 8.6 0.1 36 61 425 449 420 452 0.89 C2HE / C2H2 / C2HC zinc-binding finger zf-C2HE PF16278.5 64 ZNF480-205 - 535 4.5e-10 39.8 59.1 9 11 0.48 2.3e+02 2.3 1.1 36 51 453 468 449 477 0.83 C2HE / C2H2 / C2HC zinc-binding finger zf-C2HE PF16278.5 64 ZNF480-205 - 535 4.5e-10 39.8 59.1 10 11 0.00042 0.2 12.1 0.5 35 61 480 505 466 508 0.83 C2HE / C2H2 / C2HC zinc-binding finger zf-C2HE PF16278.5 64 ZNF480-205 - 535 4.5e-10 39.8 59.1 11 11 0.009 4.3 7.8 0.1 36 59 509 531 505 534 0.84 C2HE / C2H2 / C2HC zinc-binding finger zf-C2H2_jaz PF12171.8 27 ZNF480-205 - 535 5.8e-10 39.2 48.0 1 11 0.043 21 5.6 0.8 2 22 231 251 230 251 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF480-205 - 535 5.8e-10 39.2 48.0 2 11 0.065 31 5.0 0.4 2 21 259 278 258 279 0.88 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF480-205 - 535 5.8e-10 39.2 48.0 3 11 0.0024 1.2 9.5 0.2 2 22 287 307 286 307 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF480-205 - 535 5.8e-10 39.2 48.0 4 11 0.00096 0.46 10.8 0.1 2 22 315 335 314 335 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF480-205 - 535 5.8e-10 39.2 48.0 5 11 0.037 18 5.8 0.1 2 22 343 363 342 363 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF480-205 - 535 5.8e-10 39.2 48.0 6 11 0.032 16 6.0 0.4 2 22 371 391 370 391 0.91 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF480-205 - 535 5.8e-10 39.2 48.0 7 11 0.15 74 3.8 0.1 2 20 399 417 398 419 0.80 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF480-205 - 535 5.8e-10 39.2 48.0 8 11 0.79 3.8e+02 1.5 0.1 2 12 427 437 426 446 0.80 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF480-205 - 535 5.8e-10 39.2 48.0 9 11 0.0055 2.7 8.4 0.2 2 22 455 475 454 475 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF480-205 - 535 5.8e-10 39.2 48.0 10 11 0.024 12 6.3 0.2 2 22 483 503 482 503 0.90 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF480-205 - 535 5.8e-10 39.2 48.0 11 11 0.039 19 5.7 0.1 2 21 511 530 510 531 0.91 Zinc-finger double-stranded RNA-binding XPA_N PF01286.18 32 ZNF480-205 - 535 7.5e-10 38.7 35.6 1 11 0.57 2.8e+02 1.7 0.1 3 12 232 241 230 249 0.83 XPA protein N-terminal XPA_N PF01286.18 32 ZNF480-205 - 535 7.5e-10 38.7 35.6 2 11 2.5 1.2e+03 -0.3 0.2 3 9 260 266 258 269 0.60 XPA protein N-terminal XPA_N PF01286.18 32 ZNF480-205 - 535 7.5e-10 38.7 35.6 3 11 0.013 6.4 6.9 0.1 3 17 288 303 286 305 0.79 XPA protein N-terminal XPA_N PF01286.18 32 ZNF480-205 - 535 7.5e-10 38.7 35.6 4 11 0.025 12 6.1 0.1 3 12 316 325 314 335 0.81 XPA protein N-terminal XPA_N PF01286.18 32 ZNF480-205 - 535 7.5e-10 38.7 35.6 5 11 0.0079 3.8 7.6 0.1 3 11 344 352 342 357 0.91 XPA protein N-terminal XPA_N PF01286.18 32 ZNF480-205 - 535 7.5e-10 38.7 35.6 6 11 0.051 25 5.0 0.0 3 12 372 381 370 392 0.77 XPA protein N-terminal XPA_N PF01286.18 32 ZNF480-205 - 535 7.5e-10 38.7 35.6 7 11 0.093 45 4.2 0.1 3 12 400 409 398 412 0.87 XPA protein N-terminal XPA_N PF01286.18 32 ZNF480-205 - 535 7.5e-10 38.7 35.6 8 11 0.022 11 6.2 0.2 3 12 428 437 426 439 0.89 XPA protein N-terminal XPA_N PF01286.18 32 ZNF480-205 - 535 7.5e-10 38.7 35.6 9 11 0.037 18 5.5 0.2 3 11 456 464 454 467 0.89 XPA protein N-terminal XPA_N PF01286.18 32 ZNF480-205 - 535 7.5e-10 38.7 35.6 10 11 0.12 57 3.9 0.1 3 11 484 492 482 494 0.87 XPA protein N-terminal XPA_N PF01286.18 32 ZNF480-205 - 535 7.5e-10 38.7 35.6 11 11 0.003 1.5 9.0 0.0 3 19 512 529 510 532 0.81 XPA protein N-terminal C1_1 PF00130.22 53 ZNF480-205 - 535 1.4e-09 37.7 43.2 1 10 0.01 4.9 7.1 4.0 5 36 224 266 221 268 0.79 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF480-205 - 535 1.4e-09 37.7 43.2 2 10 0.057 28 4.7 3.7 9 37 256 295 249 299 0.77 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF480-205 - 535 1.4e-09 37.7 43.2 3 10 0.026 13 5.8 3.2 4 36 280 322 273 327 0.80 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF480-205 - 535 1.4e-09 37.7 43.2 4 10 0.0003 0.14 12.0 0.8 2 37 333 379 333 380 0.85 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF480-205 - 535 1.4e-09 37.7 43.2 5 10 0.0021 1 9.3 2.3 8 38 367 408 358 410 0.78 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF480-205 - 535 1.4e-09 37.7 43.2 6 10 0.00024 0.11 12.3 1.7 2 36 389 434 388 436 0.89 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF480-205 - 535 1.4e-09 37.7 43.2 7 10 0.0012 0.58 10.1 1.2 7 38 423 464 416 468 0.82 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF480-205 - 535 1.4e-09 37.7 43.2 8 10 0.0025 1.2 9.1 1.6 6 37 449 491 445 493 0.82 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF480-205 - 535 1.4e-09 37.7 43.2 9 10 0.0031 1.5 8.7 1.6 5 36 477 518 473 522 0.79 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF480-205 - 535 1.4e-09 37.7 43.2 10 10 0.056 27 4.7 0.1 7 22 506 521 497 531 0.75 Phorbol esters/diacylglycerol binding domain (C1 domain) zf_UBZ PF18439.1 32 ZNF480-205 - 535 1.6e-09 37.1 37.6 1 11 0.018 8.8 6.0 0.1 3 20 231 249 229 249 0.91 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF480-205 - 535 1.6e-09 37.1 37.6 2 11 0.46 2.2e+02 1.5 0.1 3 14 259 270 257 278 0.78 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF480-205 - 535 1.6e-09 37.1 37.6 3 11 0.026 13 5.5 0.1 3 15 287 299 285 306 0.83 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF480-205 - 535 1.6e-09 37.1 37.6 4 11 0.038 19 5.0 0.1 3 15 315 327 313 333 0.80 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF480-205 - 535 1.6e-09 37.1 37.6 5 11 0.016 7.8 6.2 0.1 3 12 343 352 341 357 0.88 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF480-205 - 535 1.6e-09 37.1 37.6 6 11 0.019 9.3 5.9 0.2 3 16 371 385 369 389 0.78 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF480-205 - 535 1.6e-09 37.1 37.6 7 11 0.04 20 4.9 0.1 3 13 399 409 397 417 0.85 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF480-205 - 535 1.6e-09 37.1 37.6 8 11 0.017 8.3 6.1 0.0 3 14 427 438 425 446 0.83 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF480-205 - 535 1.6e-09 37.1 37.6 9 11 0.0091 4.4 7.0 0.2 3 18 455 471 453 474 0.75 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF480-205 - 535 1.6e-09 37.1 37.6 10 11 0.064 31 4.3 0.1 3 12 483 492 481 498 0.89 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF480-205 - 535 1.6e-09 37.1 37.6 11 11 0.044 21 4.8 0.1 3 13 511 521 509 529 0.85 Ubiquitin-Binding Zinc Finger DZR PF12773.7 49 ZNF480-205 - 535 6.1e-08 32.6 41.9 1 4 0.01 4.9 7.3 9.1 14 49 232 293 203 305 0.86 Double zinc ribbon DZR PF12773.7 49 ZNF480-205 - 535 6.1e-08 32.6 41.9 2 4 0.008 3.9 7.6 5.4 1 35 289 349 278 355 0.53 Double zinc ribbon DZR PF12773.7 49 ZNF480-205 - 535 6.1e-08 32.6 41.9 3 4 0.12 56 3.9 12.2 15 48 373 432 344 470 0.50 Double zinc ribbon DZR PF12773.7 49 ZNF480-205 - 535 6.1e-08 32.6 41.9 4 4 0.0044 2.1 8.4 6.3 1 37 457 519 457 524 0.84 Double zinc ribbon # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF480-205.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF480-205.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF480-205.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF480-205.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF480-205.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:07:12 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF480-206.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF480-206.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF480-206.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF480-206.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF480-206.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:07:12 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZNF483-201 - 744 1.9e-79 258.8 93.0 1 14 0.018 17 6.0 0.1 1 21 373 396 373 399 0.80 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF483-201 - 744 1.9e-79 258.8 93.0 2 14 4.8 4.8e+03 -1.7 0.5 17 22 413 418 412 420 0.88 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF483-201 - 744 1.9e-79 258.8 93.0 3 14 6.3e-05 0.063 13.7 0.8 10 25 434 449 431 450 0.90 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF483-201 - 744 1.9e-79 258.8 93.0 4 14 8.9e-11 8.8e-08 32.2 0.4 1 25 453 477 453 478 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF483-201 - 744 1.9e-79 258.8 93.0 5 14 9.3e-08 9.3e-05 22.7 2.2 5 25 485 505 481 505 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF483-201 - 744 1.9e-79 258.8 93.0 6 14 8e-09 8e-06 26.1 2.2 1 22 509 530 509 533 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF483-201 - 744 1.9e-79 258.8 93.0 7 14 8.8e-12 8.8e-09 35.4 0.8 2 26 538 562 537 562 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF483-201 - 744 1.9e-79 258.8 93.0 8 14 1.2e-11 1.1e-08 35.0 0.5 1 25 565 589 565 590 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF483-201 - 744 1.9e-79 258.8 93.0 9 14 5.2e-10 5.2e-07 29.8 0.7 2 26 594 618 594 618 0.97 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF483-201 - 744 1.9e-79 258.8 93.0 10 14 3.6e-09 3.6e-06 27.1 0.7 4 24 624 644 621 646 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF483-201 - 744 1.9e-79 258.8 93.0 11 14 7.8e-12 7.7e-09 35.6 1.0 2 25 650 673 650 674 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF483-201 - 744 1.9e-79 258.8 93.0 12 14 3.6e-10 3.6e-07 30.3 1.1 1 25 677 701 677 702 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF483-201 - 744 1.9e-79 258.8 93.0 13 14 5.1e-09 5.1e-06 26.7 0.8 2 26 706 730 706 730 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF483-201 - 744 1.9e-79 258.8 93.0 14 14 6.8 6.8e+03 -2.2 0.1 2 10 734 742 733 744 0.82 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZNF483-201 - 744 1.4e-59 195.4 110.8 1 15 0.13 1.3e+02 3.3 0.1 8 21 309 322 308 323 0.87 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF483-201 - 744 1.4e-59 195.4 110.8 2 15 0.16 1.6e+02 3.0 0.3 7 22 365 380 365 384 0.89 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF483-201 - 744 1.4e-59 195.4 110.8 3 15 0.0043 4.3 8.0 0.1 2 17 391 406 390 407 0.92 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF483-201 - 744 1.4e-59 195.4 110.8 4 15 5.3 5.3e+03 -1.8 0.6 3 16 413 426 412 428 0.74 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF483-201 - 744 1.4e-59 195.4 110.8 5 15 8e-07 0.0008 19.7 2.3 1 23 439 461 439 461 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF483-201 - 744 1.4e-59 195.4 110.8 6 15 3.8e-07 0.00038 20.8 1.7 1 23 467 489 467 489 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF483-201 - 744 1.4e-59 195.4 110.8 7 15 3.3e-08 3.3e-05 24.1 0.8 1 23 495 517 495 517 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF483-201 - 744 1.4e-59 195.4 110.8 8 15 6.1e-10 6.1e-07 29.5 0.6 1 23 523 545 523 545 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF483-201 - 744 1.4e-59 195.4 110.8 9 15 6.4e-09 6.3e-06 26.4 3.9 1 23 551 573 551 573 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF483-201 - 744 1.4e-59 195.4 110.8 10 15 4.2e-09 4.2e-06 26.9 2.3 1 23 579 601 579 601 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF483-201 - 744 1.4e-59 195.4 110.8 11 15 4.2e-05 0.042 14.3 2.2 1 23 607 629 607 629 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF483-201 - 744 1.4e-59 195.4 110.8 12 15 5e-08 5e-05 23.5 2.4 1 23 635 657 635 657 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF483-201 - 744 1.4e-59 195.4 110.8 13 15 6.5e-09 6.5e-06 26.3 2.9 1 23 663 685 663 685 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF483-201 - 744 1.4e-59 195.4 110.8 14 15 1.9e-06 0.0018 18.6 0.2 1 23 691 713 691 713 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF483-201 - 744 1.4e-59 195.4 110.8 15 15 6.6e-07 0.00066 20.0 0.7 1 21 719 739 719 741 0.92 Zinc finger, C2H2 type SCAN PF02023.17 90 ZNF483-201 - 744 3.2e-41 139.0 3.2 1 1 7.3e-44 7.3e-41 137.9 3.2 2 89 49 136 48 137 0.98 SCAN domain zf-C2H2_4 PF13894.6 24 ZNF483-201 - 744 9e-29 97.7 102.7 1 14 3.6 3.6e+03 -0.7 0.1 9 21 310 322 308 324 0.86 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF483-201 - 744 9e-29 97.7 102.7 2 14 0.23 2.3e+02 3.1 0.2 2 18 391 407 390 409 0.89 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF483-201 - 744 9e-29 97.7 102.7 3 14 5.4 5.4e+03 -1.2 0.4 3 13 413 423 411 428 0.68 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF483-201 - 744 9e-29 97.7 102.7 4 14 0.00032 0.32 11.9 1.7 1 23 439 461 439 462 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF483-201 - 744 9e-29 97.7 102.7 5 14 6.7e-05 0.067 14.1 1.3 1 23 467 489 467 490 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF483-201 - 744 9e-29 97.7 102.7 6 14 5.1e-05 0.05 14.4 0.6 1 23 495 517 495 518 0.91 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF483-201 - 744 9e-29 97.7 102.7 7 14 8.9e-07 0.00089 19.9 0.4 1 23 523 545 523 546 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF483-201 - 744 9e-29 97.7 102.7 8 14 4.5e-05 0.045 14.6 2.9 1 23 551 573 551 574 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF483-201 - 744 9e-29 97.7 102.7 9 14 8.6e-05 0.085 13.7 1.8 1 23 579 601 579 602 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF483-201 - 744 9e-29 97.7 102.7 10 14 0.011 11 7.2 1.6 1 23 607 629 607 630 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF483-201 - 744 9e-29 97.7 102.7 11 14 1.6e-05 0.016 16.0 1.9 1 23 635 657 635 658 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF483-201 - 744 9e-29 97.7 102.7 12 14 1.2e-05 0.012 16.3 2.4 1 23 663 685 663 686 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF483-201 - 744 9e-29 97.7 102.7 13 14 9.9e-06 0.0099 16.7 0.2 1 23 691 713 691 714 0.89 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF483-201 - 744 9e-29 97.7 102.7 14 14 1.4e-05 0.014 16.2 0.5 1 23 719 741 719 742 0.92 C2H2-type zinc finger KRAB PF01352.27 42 ZNF483-201 - 744 1.1e-16 60.2 0.0 1 1 2e-19 2e-16 59.3 0.0 1 42 169 210 169 210 0.97 KRAB box zf-C2H2_11 PF16622.5 29 ZNF483-201 - 744 1.6e-15 56.6 64.1 1 12 0.06 59 3.5 0.4 4 15 389 400 387 407 0.75 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF483-201 - 744 1.6e-15 56.6 64.1 2 12 2e-06 0.002 17.9 0.8 3 26 437 460 435 461 0.94 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF483-201 - 744 1.6e-15 56.6 64.1 3 12 0.011 11 5.9 0.1 7 23 469 485 466 488 0.89 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF483-201 - 744 1.6e-15 56.6 64.1 4 12 0.0027 2.7 7.8 0.1 5 26 495 516 492 517 0.93 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF483-201 - 744 1.6e-15 56.6 64.1 5 12 0.00013 0.13 12.1 0.1 5 26 523 544 520 545 0.93 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF483-201 - 744 1.6e-15 56.6 64.1 6 12 0.00023 0.23 11.2 2.9 7 26 553 572 550 573 0.94 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF483-201 - 744 1.6e-15 56.6 64.1 7 12 0.005 5 7.0 0.8 5 26 579 600 576 601 0.93 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF483-201 - 744 1.6e-15 56.6 64.1 8 12 0.36 3.6e+02 1.0 0.2 7 15 609 617 607 625 0.87 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF483-201 - 744 1.6e-15 56.6 64.1 9 12 0.0033 3.3 7.6 0.3 5 26 635 656 632 657 0.94 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF483-201 - 744 1.6e-15 56.6 64.1 10 12 4e-05 0.039 13.7 0.9 5 26 663 684 662 685 0.94 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF483-201 - 744 1.6e-15 56.6 64.1 11 12 0.059 59 3.6 0.1 6 26 692 712 689 713 0.89 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF483-201 - 744 1.6e-15 56.6 64.1 12 12 0.063 62 3.5 0.1 7 24 721 738 719 740 0.93 zinc-finger C2H2-type Zn-ribbon_8 PF09723.10 40 ZNF483-201 - 744 2.8e-11 43.4 63.8 1 11 1.8 1.8e+03 -0.8 0.1 22 34 153 166 145 170 0.72 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF483-201 - 744 2.8e-11 43.4 63.8 2 11 0.018 18 5.5 4.8 7 34 391 418 390 423 0.85 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF483-201 - 744 2.8e-11 43.4 63.8 3 11 0.00056 0.56 10.4 0.5 7 34 440 474 438 479 0.90 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF483-201 - 744 2.8e-11 43.4 63.8 4 11 6.1e-06 0.0061 16.7 1.2 6 35 495 531 494 534 0.92 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF483-201 - 744 2.8e-11 43.4 63.8 5 11 6.9e-06 0.0068 16.5 1.8 6 34 523 558 522 561 0.91 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF483-201 - 744 2.8e-11 43.4 63.8 6 11 1.4e-05 0.014 15.5 2.2 6 37 551 589 550 591 0.91 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF483-201 - 744 2.8e-11 43.4 63.8 7 11 0.00016 0.15 12.2 3.0 6 33 579 613 578 617 0.94 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF483-201 - 744 2.8e-11 43.4 63.8 8 11 0.011 11 6.2 3.2 6 34 607 642 605 648 0.75 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF483-201 - 744 2.8e-11 43.4 63.8 9 11 0.11 1.1e+02 3.0 0.6 6 15 635 644 634 657 0.85 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF483-201 - 744 2.8e-11 43.4 63.8 10 11 3.8e-05 0.038 14.1 3.5 6 38 663 702 662 704 0.89 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF483-201 - 744 2.8e-11 43.4 63.8 11 11 0.0066 6.6 6.9 0.4 5 16 718 729 718 738 0.88 Zinc ribbon domain zf-C2H2_jaz PF12171.8 27 ZNF483-201 - 744 7.6e-10 38.8 37.6 1 9 0.022 22 5.5 0.1 2 18 467 483 466 490 0.86 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF483-201 - 744 7.6e-10 38.8 37.6 2 9 0.32 3.2e+02 1.8 0.1 2 17 495 510 494 515 0.74 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF483-201 - 744 7.6e-10 38.8 37.6 3 9 0.00084 0.84 10.0 0.0 2 22 523 543 522 543 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF483-201 - 744 7.6e-10 38.8 37.6 4 9 0.002 2 8.8 0.2 2 22 551 571 550 571 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF483-201 - 744 7.6e-10 38.8 37.6 5 9 1.8 1.8e+03 -0.6 0.4 2 12 579 589 578 599 0.80 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF483-201 - 744 7.6e-10 38.8 37.6 6 9 0.01 10 6.5 0.2 2 22 635 655 634 655 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF483-201 - 744 7.6e-10 38.8 37.6 7 9 0.0025 2.5 8.5 0.3 2 20 663 681 662 681 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF483-201 - 744 7.6e-10 38.8 37.6 8 9 0.0025 2.5 8.5 0.0 2 22 691 711 690 711 0.95 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF483-201 - 744 7.6e-10 38.8 37.6 9 9 0.00035 0.35 11.2 0.2 2 20 719 737 718 738 0.90 Zinc-finger double-stranded RNA-binding zf-C2H2_6 PF13912.6 27 ZNF483-201 - 744 2.8e-08 33.6 86.5 1 11 6.8e-06 0.0068 16.4 2.6 2 24 439 461 438 464 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF483-201 - 744 2.8e-08 33.6 86.5 2 11 0.0023 2.2 8.4 1.2 2 25 467 490 467 492 0.89 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF483-201 - 744 2.8e-08 33.6 86.5 3 11 0.061 61 3.8 0.4 2 12 495 505 495 517 0.85 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF483-201 - 744 2.8e-08 33.6 86.5 4 11 0.21 2.1e+02 2.1 0.2 2 21 523 542 523 547 0.79 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF483-201 - 744 2.8e-08 33.6 86.5 5 11 0.02 20 5.3 2.9 2 22 551 571 551 575 0.82 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF483-201 - 744 2.8e-08 33.6 86.5 6 11 0.028 28 4.8 0.3 2 12 579 589 579 590 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF483-201 - 744 2.8e-08 33.6 86.5 7 11 1.9 1.9e+03 -1.0 0.6 2 16 607 621 607 631 0.78 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF483-201 - 744 2.8e-08 33.6 86.5 8 11 0.0029 2.8 8.0 0.9 2 13 635 646 635 647 0.96 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF483-201 - 744 2.8e-08 33.6 86.5 9 11 2.6e-05 0.026 14.5 3.2 2 24 663 685 663 688 0.90 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF483-201 - 744 2.8e-08 33.6 86.5 10 11 0.00028 0.28 11.2 0.3 2 21 691 710 691 714 0.77 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF483-201 - 744 2.8e-08 33.6 86.5 11 11 2.8e-05 0.028 14.4 0.6 2 21 719 738 718 744 0.89 C2H2-type zinc finger # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF483-201.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF483-201.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF483-201.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF483-201.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF483-201.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:07:13 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- SCAN PF02023.17 90 ZNF483-202 - 244 5.3e-42 141.6 3.2 1 1 1.8e-45 1.1e-41 140.6 3.2 2 89 49 136 48 137 0.98 SCAN domain KRAB PF01352.27 42 ZNF483-202 - 244 2.3e-17 62.4 0.0 1 1 7.5e-21 4.5e-17 61.4 0.0 1 42 169 210 169 210 0.97 KRAB box # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF483-202.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF483-202.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF483-202.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF483-202.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF483-202.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:07:13 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- SCAN PF02023.17 90 ZNF483-203 - 256 5.9e-42 141.4 3.2 1 1 1.3e-45 1.2e-41 140.4 3.2 2 89 49 136 48 137 0.98 SCAN domain KRAB PF01352.27 42 ZNF483-203 - 256 2.4e-17 62.3 0.0 1 1 5.4e-21 4.8e-17 61.3 0.0 1 42 169 210 169 210 0.97 KRAB box # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF483-203.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF483-203.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF483-203.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF483-203.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF483-203.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:07:13 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- SCAN PF02023.17 90 ZNF483-204 - 178 5.2e-42 141.6 3.2 1 2 5.8e-46 5.2e-42 141.6 3.2 2 89 49 136 48 137 0.98 SCAN domain SCAN PF02023.17 90 ZNF483-204 - 178 5.2e-42 141.6 3.2 2 2 1.4 1.3e+04 -3.9 0.1 9 19 162 172 158 174 0.66 SCAN domain # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF483-204.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF483-204.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF483-204.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF483-204.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF483-204.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:07:14 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZNF484-201 - 816 4.7e-115 371.4 143.9 1 21 0.02 18 6.0 0.3 5 22 127 147 126 149 0.73 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF484-201 - 816 4.7e-115 371.4 143.9 2 21 0.32 2.8e+02 2.2 1.1 5 22 177 194 176 194 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF484-201 - 816 4.7e-115 371.4 143.9 3 21 0.029 26 5.4 0.5 12 25 240 253 230 254 0.90 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF484-201 - 816 4.7e-115 371.4 143.9 4 21 2.9 2.6e+03 -0.8 0.1 14 24 291 301 282 303 0.65 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF484-201 - 816 4.7e-115 371.4 143.9 5 21 0.00024 0.21 12.1 0.1 7 22 312 327 311 328 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF484-201 - 816 4.7e-115 371.4 143.9 6 21 1.8e-08 1.6e-05 25.1 1.3 1 26 334 359 334 359 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF484-201 - 816 4.7e-115 371.4 143.9 7 21 2.5e-10 2.2e-07 31.0 0.2 2 24 363 385 362 387 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF484-201 - 816 4.7e-115 371.4 143.9 8 21 4e-10 3.5e-07 30.3 1.7 4 24 393 413 390 415 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF484-201 - 816 4.7e-115 371.4 143.9 9 21 3.8e-08 3.4e-05 24.0 1.4 5 26 422 443 419 443 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF484-201 - 816 4.7e-115 371.4 143.9 10 21 5.7e-08 5.1e-05 23.5 0.0 2 25 447 470 446 471 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF484-201 - 816 4.7e-115 371.4 143.9 11 21 1.9e-11 1.7e-08 34.5 0.7 1 25 474 498 474 498 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF484-201 - 816 4.7e-115 371.4 143.9 12 21 1.3e-08 1.1e-05 25.6 2.2 2 24 503 525 502 527 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF484-201 - 816 4.7e-115 371.4 143.9 13 21 1.6e-09 1.4e-06 28.4 1.2 2 24 531 553 530 555 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF484-201 - 816 4.7e-115 371.4 143.9 14 21 2.3e-10 2e-07 31.1 2.2 4 26 561 583 558 583 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF484-201 - 816 4.7e-115 371.4 143.9 15 21 8.7e-09 7.8e-06 26.1 0.6 5 25 590 610 587 611 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF484-201 - 816 4.7e-115 371.4 143.9 16 21 5.8e-11 5.2e-08 33.0 1.1 1 26 614 639 614 639 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF484-201 - 816 4.7e-115 371.4 143.9 17 21 2.5e-08 2.2e-05 24.7 1.3 5 25 646 666 643 667 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF484-201 - 816 4.7e-115 371.4 143.9 18 21 3.2e-08 2.8e-05 24.3 0.1 4 24 673 693 671 695 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF484-201 - 816 4.7e-115 371.4 143.9 19 21 1.3e-12 1.2e-09 38.2 1.4 1 24 698 721 698 723 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF484-201 - 816 4.7e-115 371.4 143.9 20 21 1.1e-06 0.001 19.4 2.3 5 25 730 750 727 750 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF484-201 - 816 4.7e-115 371.4 143.9 21 21 2.2e-06 0.0019 18.5 0.4 1 18 754 771 754 773 0.94 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZNF484-201 - 816 1.3e-88 286.8 142.3 1 20 3.2 2.9e+03 -0.9 0.2 1 8 140 147 140 149 0.85 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF484-201 - 816 1.3e-88 286.8 142.3 2 20 0.18 1.6e+02 3.0 0.4 2 16 188 202 187 204 0.80 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF484-201 - 816 1.3e-88 286.8 142.3 3 20 0.0013 1.2 9.8 0.1 1 16 243 258 243 259 0.94 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF484-201 - 816 1.3e-88 286.8 142.3 4 20 1.2 1.1e+03 0.5 0.3 1 18 292 309 292 314 0.78 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF484-201 - 816 1.3e-88 286.8 142.3 5 20 0.0038 3.4 8.3 0.1 5 23 324 342 322 342 0.95 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF484-201 - 816 1.3e-88 286.8 142.3 6 20 3.8e-08 3.4e-05 24.1 0.9 1 23 348 370 348 370 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF484-201 - 816 1.3e-88 286.8 142.3 7 20 5e-08 4.5e-05 23.7 1.2 1 23 376 398 376 398 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF484-201 - 816 1.3e-88 286.8 142.3 8 20 7e-09 6.3e-06 26.4 1.7 1 23 404 426 404 426 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF484-201 - 816 1.3e-88 286.8 142.3 9 20 5.2e-08 4.7e-05 23.6 0.9 1 23 432 454 432 454 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF484-201 - 816 1.3e-88 286.8 142.3 10 20 4e-09 3.6e-06 27.1 0.3 1 23 460 482 460 482 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF484-201 - 816 1.3e-88 286.8 142.3 11 20 6.2e-05 0.056 13.9 3.8 1 21 488 508 488 510 0.95 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF484-201 - 816 1.3e-88 286.8 142.3 12 20 7.1e-08 6.4e-05 23.2 0.3 1 23 516 538 516 538 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF484-201 - 816 1.3e-88 286.8 142.3 13 20 1.6e-06 0.0014 19.0 3.7 1 23 544 566 544 566 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF484-201 - 816 1.3e-88 286.8 142.3 14 20 1.7e-08 1.5e-05 25.2 1.8 1 23 572 594 572 594 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF484-201 - 816 1.3e-88 286.8 142.3 15 20 1.1e-08 9.8e-06 25.8 0.6 1 23 600 622 600 622 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF484-201 - 816 1.3e-88 286.8 142.3 16 20 1.6e-08 1.4e-05 25.2 1.9 1 23 628 650 628 650 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF484-201 - 816 1.3e-88 286.8 142.3 17 20 1.6e-08 1.4e-05 25.2 0.2 1 23 656 678 656 678 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF484-201 - 816 1.3e-88 286.8 142.3 18 20 2.8e-09 2.5e-06 27.6 2.2 1 23 684 706 684 706 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF484-201 - 816 1.3e-88 286.8 142.3 19 20 1.9e-07 0.00017 21.9 3.6 1 23 712 734 712 734 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF484-201 - 816 1.3e-88 286.8 142.3 20 20 1.8e-07 0.00017 21.9 0.1 1 23 740 762 740 762 0.98 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZNF484-201 - 816 1.7e-42 140.4 128.1 1 19 6.3 5.7e+03 -1.3 0.1 2 9 141 148 140 150 0.81 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF484-201 - 816 1.7e-42 140.4 128.1 2 19 0.32 2.8e+02 2.8 0.4 2 16 188 202 187 204 0.82 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF484-201 - 816 1.7e-42 140.4 128.1 3 19 0.034 31 5.8 0.1 1 16 243 258 243 260 0.87 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF484-201 - 816 1.7e-42 140.4 128.1 4 19 0.91 8.2e+02 1.3 0.0 5 23 324 342 323 343 0.91 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF484-201 - 816 1.7e-42 140.4 128.1 5 19 1.6e-05 0.015 16.1 0.7 1 23 348 370 348 371 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF484-201 - 816 1.7e-42 140.4 128.1 6 19 0.00012 0.11 13.4 0.9 1 23 376 398 376 399 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF484-201 - 816 1.7e-42 140.4 128.1 7 19 4.8e-05 0.043 14.7 1.4 1 23 404 426 404 427 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF484-201 - 816 1.7e-42 140.4 128.1 8 19 7.4e-05 0.067 14.1 0.7 1 23 432 454 432 455 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF484-201 - 816 1.7e-42 140.4 128.1 9 19 2.9e-06 0.0026 18.4 0.2 1 23 460 482 460 483 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF484-201 - 816 1.7e-42 140.4 128.1 10 19 0.0028 2.5 9.2 3.4 1 21 488 508 488 510 0.89 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF484-201 - 816 1.7e-42 140.4 128.1 11 19 0.00014 0.13 13.2 0.4 1 23 516 538 516 539 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF484-201 - 816 1.7e-42 140.4 128.1 12 19 0.0017 1.5 9.8 3.0 1 23 544 566 544 567 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF484-201 - 816 1.7e-42 140.4 128.1 13 19 6e-06 0.0054 17.5 1.6 1 23 572 594 572 595 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF484-201 - 816 1.7e-42 140.4 128.1 14 19 5.9e-05 0.052 14.4 0.4 1 23 600 622 600 623 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF484-201 - 816 1.7e-42 140.4 128.1 15 19 2.4e-05 0.022 15.6 1.4 1 23 628 650 628 651 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF484-201 - 816 1.7e-42 140.4 128.1 16 19 5.6e-05 0.05 14.4 0.2 1 23 656 678 656 679 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF484-201 - 816 1.7e-42 140.4 128.1 17 19 9.5e-06 0.0085 16.9 1.3 1 23 684 706 684 707 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF484-201 - 816 1.7e-42 140.4 128.1 18 19 0.00036 0.32 12.0 2.8 1 23 712 734 712 735 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF484-201 - 816 1.7e-42 140.4 128.1 19 19 0.00044 0.4 11.7 0.1 1 23 740 762 740 763 0.92 C2H2-type zinc finger Zn-ribbon_8 PF09723.10 40 ZNF484-201 - 816 2.4e-20 72.4 78.7 1 15 0.053 48 4.2 0.0 27 37 139 150 116 159 0.65 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF484-201 - 816 2.4e-20 72.4 78.7 2 15 0.11 99 3.2 0.2 14 36 174 196 171 203 0.65 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF484-201 - 816 2.4e-20 72.4 78.7 3 15 0.47 4.2e+02 1.2 0.9 7 16 244 253 232 263 0.75 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF484-201 - 816 2.4e-20 72.4 78.7 4 15 1.1e-05 0.0096 16.0 1.7 6 36 348 385 347 389 0.87 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF484-201 - 816 2.4e-20 72.4 78.7 5 15 0.00018 0.16 12.1 2.5 6 34 404 439 403 445 0.91 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF484-201 - 816 2.4e-20 72.4 78.7 6 15 4.4e-05 0.039 14.1 0.2 6 35 432 468 431 476 0.91 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF484-201 - 816 2.4e-20 72.4 78.7 7 15 6.1e-05 0.055 13.6 0.8 6 34 460 495 459 500 0.92 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF484-201 - 816 2.4e-20 72.4 78.7 8 15 0.0011 1 9.5 5.6 6 34 488 523 487 525 0.88 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF484-201 - 816 2.4e-20 72.4 78.7 9 15 0.00026 0.24 11.6 3.3 6 34 516 551 515 556 0.89 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF484-201 - 816 2.4e-20 72.4 78.7 10 15 0.003 2.7 8.2 3.2 6 38 544 583 543 584 0.81 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF484-201 - 816 2.4e-20 72.4 78.7 11 15 0.00032 0.29 11.3 3.1 6 34 572 607 571 607 0.94 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF484-201 - 816 2.4e-20 72.4 78.7 12 15 1.7e-06 0.0015 18.6 2.1 6 38 600 639 599 641 0.92 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF484-201 - 816 2.4e-20 72.4 78.7 13 15 2.2e-05 0.02 15.0 1.2 6 34 656 691 655 697 0.88 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF484-201 - 816 2.4e-20 72.4 78.7 14 15 0.00023 0.21 11.8 2.6 6 35 712 748 711 752 0.89 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF484-201 - 816 2.4e-20 72.4 78.7 15 15 0.0046 4.1 7.6 0.1 6 29 740 770 739 775 0.79 Zinc ribbon domain zf-C2H2_6 PF13912.6 27 ZNF484-201 - 816 3.7e-20 71.4 116.0 1 19 0.17 1.5e+02 2.5 0.4 2 9 140 147 140 150 0.88 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF484-201 - 816 3.7e-20 71.4 116.0 2 19 0.17 1.5e+02 2.5 0.1 3 17 188 202 188 204 0.79 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF484-201 - 816 3.7e-20 71.4 116.0 3 19 0.0049 4.4 7.4 1.0 2 11 243 252 242 254 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF484-201 - 816 3.7e-20 71.4 116.0 4 19 1.8 1.6e+03 -0.7 0.0 5 24 323 342 323 343 0.84 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF484-201 - 816 3.7e-20 71.4 116.0 5 19 0.00039 0.35 10.9 1.1 1 13 347 359 347 371 0.80 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF484-201 - 816 3.7e-20 71.4 116.0 6 19 0.0085 7.6 6.7 0.3 2 11 376 385 376 386 0.95 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF484-201 - 816 3.7e-20 71.4 116.0 7 19 0.014 13 6.0 0.5 2 11 404 413 404 414 0.97 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF484-201 - 816 3.7e-20 71.4 116.0 8 19 0.00012 0.11 12.6 0.4 2 24 432 454 432 457 0.85 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF484-201 - 816 3.7e-20 71.4 116.0 9 19 0.00027 0.24 11.4 0.1 2 24 460 482 460 485 0.89 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF484-201 - 816 3.7e-20 71.4 116.0 10 19 0.017 15 5.7 2.9 2 24 488 510 488 513 0.83 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF484-201 - 816 3.7e-20 71.4 116.0 11 19 0.00049 0.44 10.6 0.2 1 11 515 525 515 539 0.95 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF484-201 - 816 3.7e-20 71.4 116.0 12 19 0.011 9.8 6.3 0.6 2 11 544 553 544 553 0.95 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF484-201 - 816 3.7e-20 71.4 116.0 13 19 0.0003 0.27 11.3 1.0 2 12 572 582 572 583 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF484-201 - 816 3.7e-20 71.4 116.0 14 19 0.0013 1.1 9.3 0.4 2 24 600 622 600 625 0.89 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF484-201 - 816 3.7e-20 71.4 116.0 15 19 0.044 39 4.4 0.7 2 12 628 638 628 650 0.88 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF484-201 - 816 3.7e-20 71.4 116.0 16 19 8.8e-05 0.079 13.0 0.6 1 22 655 676 655 680 0.82 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF484-201 - 816 3.7e-20 71.4 116.0 17 19 0.0013 1.2 9.2 0.4 2 11 684 693 684 706 0.89 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF484-201 - 816 3.7e-20 71.4 116.0 18 19 0.014 13 5.9 0.7 2 11 712 721 712 732 0.95 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF484-201 - 816 3.7e-20 71.4 116.0 19 19 0.0013 1.1 9.3 0.2 2 25 740 763 740 765 0.88 C2H2-type zinc finger zf-C2H2_jaz PF12171.8 27 ZNF484-201 - 816 2.1e-09 37.4 81.3 1 16 0.25 2.2e+02 2.3 0.1 1 18 242 259 242 260 0.83 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF484-201 - 816 2.1e-09 37.4 81.3 2 16 0.0038 3.4 8.1 0.4 2 22 348 368 347 368 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF484-201 - 816 2.1e-09 37.4 81.3 3 16 0.0028 2.5 8.5 0.1 2 22 376 396 375 396 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF484-201 - 816 2.1e-09 37.4 81.3 4 16 0.00089 0.8 10.1 0.3 2 22 404 424 403 424 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF484-201 - 816 2.1e-09 37.4 81.3 5 16 0.037 33 4.9 0.2 2 22 432 452 431 452 0.87 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF484-201 - 816 2.1e-09 37.4 81.3 6 16 0.0012 1 9.7 0.0 2 22 460 480 459 480 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF484-201 - 816 2.1e-09 37.4 81.3 7 16 1.7 1.6e+03 -0.4 0.1 2 11 488 497 487 508 0.82 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF484-201 - 816 2.1e-09 37.4 81.3 8 16 0.036 32 5.0 0.4 2 22 516 536 515 536 0.90 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF484-201 - 816 2.1e-09 37.4 81.3 9 16 0.051 46 4.5 0.7 2 22 544 564 543 564 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF484-201 - 816 2.1e-09 37.4 81.3 10 16 0.00086 0.77 10.1 0.5 2 21 572 591 571 592 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF484-201 - 816 2.1e-09 37.4 81.3 11 16 0.12 1.1e+02 3.3 0.1 2 22 600 620 599 620 0.86 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF484-201 - 816 2.1e-09 37.4 81.3 12 16 0.35 3.1e+02 1.8 0.6 2 24 628 650 627 650 0.91 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF484-201 - 816 2.1e-09 37.4 81.3 13 16 0.01 9.2 6.7 0.2 2 22 656 676 655 676 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF484-201 - 816 2.1e-09 37.4 81.3 14 16 0.048 43 4.6 0.3 2 21 684 703 683 704 0.88 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF484-201 - 816 2.1e-09 37.4 81.3 15 16 0.0033 3 8.2 1.1 2 20 712 730 711 731 0.95 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF484-201 - 816 2.1e-09 37.4 81.3 16 16 0.45 4e+02 1.5 0.1 2 22 740 760 739 760 0.81 Zinc-finger double-stranded RNA-binding zf-met PF12874.7 25 ZNF484-201 - 816 3.7e-09 36.7 105.7 1 16 1.1 9.4e+02 0.4 0.2 2 16 244 258 243 259 0.88 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF484-201 - 816 3.7e-09 36.7 105.7 2 16 0.0018 1.6 9.2 0.5 1 21 348 368 348 371 0.92 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF484-201 - 816 3.7e-09 36.7 105.7 3 16 0.011 9.5 6.8 0.4 1 22 376 397 376 399 0.91 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF484-201 - 816 3.7e-09 36.7 105.7 4 16 0.017 15 6.1 1.1 1 21 404 424 404 427 0.90 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF484-201 - 816 3.7e-09 36.7 105.7 5 16 0.001 0.91 10.0 0.7 1 21 432 452 432 455 0.91 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF484-201 - 816 3.7e-09 36.7 105.7 6 16 0.00012 0.1 13.0 0.3 1 21 460 480 460 483 0.91 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF484-201 - 816 3.7e-09 36.7 105.7 7 16 0.4 3.6e+02 1.8 0.2 1 11 488 498 488 508 0.80 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF484-201 - 816 3.7e-09 36.7 105.7 8 16 0.027 24 5.5 0.5 1 23 516 538 516 539 0.91 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF484-201 - 816 3.7e-09 36.7 105.7 9 16 0.025 22 5.6 1.4 1 22 544 565 544 567 0.91 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF484-201 - 816 3.7e-09 36.7 105.7 10 16 0.00013 0.12 12.8 2.1 1 22 572 593 572 595 0.91 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF484-201 - 816 3.7e-09 36.7 105.7 11 16 0.0063 5.7 7.5 0.3 1 21 600 620 600 623 0.91 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF484-201 - 816 3.7e-09 36.7 105.7 12 16 0.011 10 6.7 1.6 1 23 628 650 628 651 0.95 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF484-201 - 816 3.7e-09 36.7 105.7 13 16 0.0031 2.7 8.5 0.2 1 21 656 676 656 679 0.92 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF484-201 - 816 3.7e-09 36.7 105.7 14 16 0.032 29 5.2 0.8 1 20 684 703 684 707 0.90 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF484-201 - 816 3.7e-09 36.7 105.7 15 16 0.025 22 5.6 0.8 1 19 712 730 712 733 0.95 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF484-201 - 816 3.7e-09 36.7 105.7 16 16 0.82 7.3e+02 0.8 0.2 1 21 740 760 740 763 0.87 Zinc-finger of C2H2 type DUF3268 PF11672.8 118 ZNF484-201 - 816 6.1e-08 33.0 56.2 1 10 6.5 5.9e+03 -2.4 1.1 4 18 188 202 185 254 0.59 zinc-finger-containing domain DUF3268 PF11672.8 118 ZNF484-201 - 816 6.1e-08 33.0 56.2 2 10 0.0003 0.27 11.6 0.3 4 39 349 385 346 400 0.87 zinc-finger-containing domain DUF3268 PF11672.8 118 ZNF484-201 - 816 6.1e-08 33.0 56.2 3 10 0.0014 1.2 9.5 0.4 2 43 403 443 402 453 0.85 zinc-finger-containing domain DUF3268 PF11672.8 118 ZNF484-201 - 816 6.1e-08 33.0 56.2 4 10 0.0077 6.9 7.0 1.3 3 40 460 497 457 510 0.78 zinc-finger-containing domain DUF3268 PF11672.8 118 ZNF484-201 - 816 6.1e-08 33.0 56.2 5 10 0.00047 0.42 11.0 1.4 2 38 487 523 486 533 0.90 zinc-finger-containing domain DUF3268 PF11672.8 118 ZNF484-201 - 816 6.1e-08 33.0 56.2 6 10 0.0011 1 9.7 1.0 4 38 517 551 514 563 0.90 zinc-finger-containing domain DUF3268 PF11672.8 118 ZNF484-201 - 816 6.1e-08 33.0 56.2 7 10 0.00036 0.32 11.3 0.4 2 38 571 607 570 622 0.91 zinc-finger-containing domain DUF3268 PF11672.8 118 ZNF484-201 - 816 6.1e-08 33.0 56.2 8 10 0.00072 0.65 10.3 1.2 2 38 627 663 626 672 0.90 zinc-finger-containing domain DUF3268 PF11672.8 118 ZNF484-201 - 816 6.1e-08 33.0 56.2 9 10 0.044 40 4.6 0.3 8 39 661 692 661 709 0.76 zinc-finger-containing domain DUF3268 PF11672.8 118 ZNF484-201 - 816 6.1e-08 33.0 56.2 10 10 0.0055 4.9 7.5 0.8 2 41 711 750 710 761 0.80 zinc-finger-containing domain # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF484-201.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF484-201.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF484-201.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF484-201.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF484-201.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:07:14 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZNF484-202 - 852 1.3e-114 370.0 143.9 1 21 0.022 19 5.9 0.3 5 22 163 183 162 185 0.73 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF484-202 - 852 1.3e-114 370.0 143.9 2 21 0.35 3e+02 2.1 1.1 5 22 213 230 212 230 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF484-202 - 852 1.3e-114 370.0 143.9 3 21 0.032 28 5.4 0.5 12 25 276 289 266 290 0.90 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF484-202 - 852 1.3e-114 370.0 143.9 4 21 3.1 2.7e+03 -0.9 0.1 14 24 327 337 318 339 0.65 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF484-202 - 852 1.3e-114 370.0 143.9 5 21 0.00026 0.22 12.0 0.1 7 22 348 363 347 364 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF484-202 - 852 1.3e-114 370.0 143.9 6 21 2e-08 1.7e-05 25.0 1.3 1 26 370 395 370 395 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF484-202 - 852 1.3e-114 370.0 143.9 7 21 2.8e-10 2.3e-07 30.9 0.2 2 24 399 421 398 423 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF484-202 - 852 1.3e-114 370.0 143.9 8 21 4.4e-10 3.7e-07 30.3 1.7 4 24 429 449 426 451 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF484-202 - 852 1.3e-114 370.0 143.9 9 21 4.2e-08 3.6e-05 24.0 1.4 5 26 458 479 455 479 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF484-202 - 852 1.3e-114 370.0 143.9 10 21 6.3e-08 5.4e-05 23.4 0.0 2 25 483 506 482 507 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF484-202 - 852 1.3e-114 370.0 143.9 11 21 2.1e-11 1.8e-08 34.4 0.7 1 25 510 534 510 534 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF484-202 - 852 1.3e-114 370.0 143.9 12 21 1.4e-08 1.2e-05 25.5 2.2 2 24 539 561 538 563 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF484-202 - 852 1.3e-114 370.0 143.9 13 21 1.7e-09 1.5e-06 28.4 1.2 2 24 567 589 566 591 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF484-202 - 852 1.3e-114 370.0 143.9 14 21 2.5e-10 2.1e-07 31.0 2.2 4 26 597 619 594 619 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF484-202 - 852 1.3e-114 370.0 143.9 15 21 9.5e-09 8.1e-06 26.0 0.6 5 25 626 646 623 647 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF484-202 - 852 1.3e-114 370.0 143.9 16 21 6.4e-11 5.4e-08 32.9 1.1 1 26 650 675 650 675 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF484-202 - 852 1.3e-114 370.0 143.9 17 21 2.7e-08 2.3e-05 24.6 1.3 5 25 682 702 679 703 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF484-202 - 852 1.3e-114 370.0 143.9 18 21 3.5e-08 3e-05 24.2 0.1 4 24 709 729 707 731 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF484-202 - 852 1.3e-114 370.0 143.9 19 21 1.5e-12 1.3e-09 38.1 1.4 1 24 734 757 734 759 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF484-202 - 852 1.3e-114 370.0 143.9 20 21 1.3e-06 0.0011 19.3 2.3 5 25 766 786 763 786 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF484-202 - 852 1.3e-114 370.0 143.9 21 21 2.4e-06 0.002 18.4 0.4 1 18 790 807 790 809 0.94 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZNF484-202 - 852 3.3e-88 285.5 142.3 1 20 3.5 3e+03 -1.0 0.2 1 8 176 183 176 185 0.85 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF484-202 - 852 3.3e-88 285.5 142.3 2 20 0.2 1.7e+02 3.0 0.4 2 16 224 238 223 240 0.80 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF484-202 - 852 3.3e-88 285.5 142.3 3 20 0.0015 1.2 9.7 0.1 1 16 279 294 279 295 0.94 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF484-202 - 852 3.3e-88 285.5 142.3 4 20 1.3 1.1e+03 0.4 0.3 1 18 328 345 328 350 0.78 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF484-202 - 852 3.3e-88 285.5 142.3 5 20 0.0042 3.6 8.2 0.1 5 23 360 378 358 378 0.95 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF484-202 - 852 3.3e-88 285.5 142.3 6 20 4.2e-08 3.6e-05 24.0 0.9 1 23 384 406 384 406 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF484-202 - 852 3.3e-88 285.5 142.3 7 20 5.5e-08 4.7e-05 23.6 1.2 1 23 412 434 412 434 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF484-202 - 852 3.3e-88 285.5 142.3 8 20 7.7e-09 6.6e-06 26.3 1.7 1 23 440 462 440 462 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF484-202 - 852 3.3e-88 285.5 142.3 9 20 5.8e-08 4.9e-05 23.5 0.9 1 23 468 490 468 490 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF484-202 - 852 3.3e-88 285.5 142.3 10 20 4.5e-09 3.8e-06 27.0 0.3 1 23 496 518 496 518 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF484-202 - 852 3.3e-88 285.5 142.3 11 20 6.9e-05 0.059 13.9 3.8 1 21 524 544 524 546 0.95 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF484-202 - 852 3.3e-88 285.5 142.3 12 20 7.9e-08 6.7e-05 23.1 0.3 1 23 552 574 552 574 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF484-202 - 852 3.3e-88 285.5 142.3 13 20 1.7e-06 0.0015 18.9 3.7 1 23 580 602 580 602 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF484-202 - 852 3.3e-88 285.5 142.3 14 20 1.8e-08 1.6e-05 25.1 1.8 1 23 608 630 608 630 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF484-202 - 852 3.3e-88 285.5 142.3 15 20 1.2e-08 1e-05 25.7 0.6 1 23 636 658 636 658 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF484-202 - 852 3.3e-88 285.5 142.3 16 20 1.8e-08 1.5e-05 25.2 1.9 1 23 664 686 664 686 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF484-202 - 852 3.3e-88 285.5 142.3 17 20 1.8e-08 1.5e-05 25.2 0.2 1 23 692 714 692 714 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF484-202 - 852 3.3e-88 285.5 142.3 18 20 3.1e-09 2.7e-06 27.5 2.2 1 23 720 742 720 742 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF484-202 - 852 3.3e-88 285.5 142.3 19 20 2.1e-07 0.00018 21.8 3.6 1 23 748 770 748 770 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF484-202 - 852 3.3e-88 285.5 142.3 20 20 2e-07 0.00017 21.8 0.1 1 23 776 798 776 798 0.98 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZNF484-202 - 852 4.2e-42 139.2 128.1 1 19 6.9 5.9e+03 -1.3 0.1 2 9 177 184 176 186 0.81 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF484-202 - 852 4.2e-42 139.2 128.1 2 19 0.35 3e+02 2.7 0.4 2 16 224 238 223 240 0.82 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF484-202 - 852 4.2e-42 139.2 128.1 3 19 0.038 32 5.7 0.1 1 16 279 294 279 296 0.87 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF484-202 - 852 4.2e-42 139.2 128.1 4 19 1 8.6e+02 1.3 0.0 5 23 360 378 359 379 0.91 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF484-202 - 852 4.2e-42 139.2 128.1 5 19 1.8e-05 0.015 16.1 0.7 1 23 384 406 384 407 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF484-202 - 852 4.2e-42 139.2 128.1 6 19 0.00013 0.11 13.4 0.9 1 23 412 434 412 435 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF484-202 - 852 4.2e-42 139.2 128.1 7 19 5.3e-05 0.046 14.6 1.4 1 23 440 462 440 463 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF484-202 - 852 4.2e-42 139.2 128.1 8 19 8.2e-05 0.07 14.0 0.7 1 23 468 490 468 491 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF484-202 - 852 4.2e-42 139.2 128.1 9 19 3.2e-06 0.0027 18.4 0.2 1 23 496 518 496 519 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF484-202 - 852 4.2e-42 139.2 128.1 10 19 0.0031 2.6 9.1 3.4 1 21 524 544 524 546 0.89 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF484-202 - 852 4.2e-42 139.2 128.1 11 19 0.00016 0.13 13.1 0.4 1 23 552 574 552 575 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF484-202 - 852 4.2e-42 139.2 128.1 12 19 0.0019 1.6 9.8 3.0 1 23 580 602 580 603 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF484-202 - 852 4.2e-42 139.2 128.1 13 19 6.6e-06 0.0056 17.4 1.6 1 23 608 630 608 631 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF484-202 - 852 4.2e-42 139.2 128.1 14 19 6.5e-05 0.055 14.3 0.4 1 23 636 658 636 659 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF484-202 - 852 4.2e-42 139.2 128.1 15 19 2.7e-05 0.023 15.5 1.4 1 23 664 686 664 687 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF484-202 - 852 4.2e-42 139.2 128.1 16 19 6.2e-05 0.053 14.4 0.2 1 23 692 714 692 715 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF484-202 - 852 4.2e-42 139.2 128.1 17 19 1e-05 0.0089 16.8 1.3 1 23 720 742 720 743 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF484-202 - 852 4.2e-42 139.2 128.1 18 19 0.00039 0.34 11.9 2.8 1 23 748 770 748 771 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF484-202 - 852 4.2e-42 139.2 128.1 19 19 0.00049 0.42 11.6 0.1 1 23 776 798 776 799 0.92 C2H2-type zinc finger KRAB PF01352.27 42 ZNF484-202 - 852 1.7e-22 78.8 0.6 1 1 4.5e-25 3.8e-22 77.6 0.6 1 42 7 48 7 48 0.99 KRAB box Zn-ribbon_8 PF09723.10 40 ZNF484-202 - 852 3.8e-20 71.7 78.4 1 15 0.059 50 4.1 0.0 27 37 175 186 152 195 0.65 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF484-202 - 852 3.8e-20 71.7 78.4 2 15 0.12 1e+02 3.1 0.2 14 36 210 232 207 239 0.65 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF484-202 - 852 3.8e-20 71.7 78.4 3 15 0.52 4.4e+02 1.1 0.9 7 16 280 289 268 299 0.75 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF484-202 - 852 3.8e-20 71.7 78.4 4 15 1.2e-05 0.01 15.9 1.7 6 36 384 421 383 425 0.87 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF484-202 - 852 3.8e-20 71.7 78.4 5 15 0.00019 0.16 12.1 2.4 6 34 440 475 439 481 0.91 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF484-202 - 852 3.8e-20 71.7 78.4 6 15 5.3e-05 0.045 13.9 0.3 6 35 468 504 467 509 0.90 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF484-202 - 852 3.8e-20 71.7 78.4 7 15 6.7e-05 0.057 13.5 0.8 6 34 496 531 495 535 0.92 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF484-202 - 852 3.8e-20 71.7 78.4 8 15 0.00064 0.55 10.4 5.1 6 34 524 559 523 564 0.87 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF484-202 - 852 3.8e-20 71.7 78.4 9 15 0.00027 0.23 11.6 3.2 6 34 552 587 550 592 0.90 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF484-202 - 852 3.8e-20 71.7 78.4 10 15 0.0028 2.4 8.4 3.1 6 38 580 619 579 621 0.81 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF484-202 - 852 3.8e-20 71.7 78.4 11 15 0.00011 0.094 12.8 3.0 6 35 608 644 607 648 0.91 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF484-202 - 852 3.8e-20 71.7 78.4 12 15 1.9e-06 0.0016 18.5 2.2 6 38 636 675 634 677 0.92 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF484-202 - 852 3.8e-20 71.7 78.4 13 15 2.4e-05 0.021 14.9 1.2 6 34 692 727 691 733 0.88 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF484-202 - 852 3.8e-20 71.7 78.4 14 15 0.00024 0.2 11.8 2.6 6 35 748 784 747 789 0.89 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF484-202 - 852 3.8e-20 71.7 78.4 15 15 0.0051 4.4 7.5 0.1 6 29 776 806 775 811 0.79 Zinc ribbon domain zf-C2H2_6 PF13912.6 27 ZNF484-202 - 852 1.1e-19 69.9 116.3 1 19 0.19 1.6e+02 2.4 0.4 2 9 176 183 176 186 0.88 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF484-202 - 852 1.1e-19 69.9 116.3 2 19 0.18 1.6e+02 2.5 0.1 3 17 224 238 224 240 0.79 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF484-202 - 852 1.1e-19 69.9 116.3 3 19 0.0054 4.6 7.4 1.0 2 11 279 288 278 290 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF484-202 - 852 1.1e-19 69.9 116.3 4 19 1.9 1.7e+03 -0.8 0.0 5 24 359 378 359 379 0.84 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF484-202 - 852 1.1e-19 69.9 116.3 5 19 0.00043 0.37 10.9 1.1 1 13 383 395 383 407 0.80 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF484-202 - 852 1.1e-19 69.9 116.3 6 19 0.0093 7.9 6.6 0.3 2 11 412 421 412 422 0.95 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF484-202 - 852 1.1e-19 69.9 116.3 7 19 0.015 13 5.9 0.5 2 11 440 449 440 450 0.97 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF484-202 - 852 1.1e-19 69.9 116.3 8 19 0.00013 0.11 12.5 0.4 2 24 468 490 468 493 0.85 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF484-202 - 852 1.1e-19 69.9 116.3 9 19 0.0003 0.26 11.4 0.1 2 24 496 518 496 521 0.89 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF484-202 - 852 1.1e-19 69.9 116.3 10 19 0.019 16 5.6 2.9 2 24 524 546 524 549 0.83 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF484-202 - 852 1.1e-19 69.9 116.3 11 19 0.00054 0.46 10.5 0.2 1 11 551 561 551 575 0.95 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF484-202 - 852 1.1e-19 69.9 116.3 12 19 0.012 10 6.2 0.6 2 11 580 589 580 589 0.95 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF484-202 - 852 1.1e-19 69.9 116.3 13 19 0.00033 0.28 11.2 1.0 2 12 608 618 608 619 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF484-202 - 852 1.1e-19 69.9 116.3 14 19 0.0014 1.2 9.2 0.4 2 24 636 658 636 661 0.89 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF484-202 - 852 1.1e-19 69.9 116.3 15 19 0.048 41 4.3 0.7 2 12 664 674 664 686 0.88 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF484-202 - 852 1.1e-19 69.9 116.3 16 19 9.7e-05 0.083 12.9 0.6 1 22 691 712 691 716 0.82 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF484-202 - 852 1.1e-19 69.9 116.3 17 19 0.0015 1.3 9.1 0.4 2 11 720 729 720 742 0.89 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF484-202 - 852 1.1e-19 69.9 116.3 18 19 0.018 15 5.7 0.9 2 11 748 757 748 767 0.96 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF484-202 - 852 1.1e-19 69.9 116.3 19 19 0.0014 1.2 9.2 0.2 2 25 776 799 776 801 0.88 C2H2-type zinc finger zf-C2H2_jaz PF12171.8 27 ZNF484-202 - 852 4.4e-09 36.4 81.3 1 16 0.27 2.3e+02 2.2 0.1 1 18 278 295 278 296 0.83 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF484-202 - 852 4.4e-09 36.4 81.3 2 16 0.0042 3.6 8.0 0.4 2 22 384 404 383 404 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF484-202 - 852 4.4e-09 36.4 81.3 3 16 0.0031 2.6 8.4 0.1 2 22 412 432 411 432 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF484-202 - 852 4.4e-09 36.4 81.3 4 16 0.00098 0.84 10.0 0.3 2 22 440 460 439 460 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF484-202 - 852 4.4e-09 36.4 81.3 5 16 0.041 35 4.8 0.2 2 22 468 488 467 488 0.87 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF484-202 - 852 4.4e-09 36.4 81.3 6 16 0.0013 1.1 9.6 0.0 2 22 496 516 495 516 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF484-202 - 852 4.4e-09 36.4 81.3 7 16 1.9 1.6e+03 -0.5 0.1 2 11 524 533 523 544 0.82 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF484-202 - 852 4.4e-09 36.4 81.3 8 16 0.039 34 4.9 0.4 2 22 552 572 551 572 0.90 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF484-202 - 852 4.4e-09 36.4 81.3 9 16 0.056 48 4.4 0.7 2 22 580 600 579 600 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF484-202 - 852 4.4e-09 36.4 81.3 10 16 0.00095 0.81 10.0 0.5 2 21 608 627 607 628 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF484-202 - 852 4.4e-09 36.4 81.3 11 16 0.13 1.1e+02 3.2 0.1 2 22 636 656 635 656 0.86 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF484-202 - 852 4.4e-09 36.4 81.3 12 16 0.38 3.3e+02 1.7 0.6 2 24 664 686 663 686 0.91 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF484-202 - 852 4.4e-09 36.4 81.3 13 16 0.011 9.7 6.6 0.2 2 22 692 712 691 712 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF484-202 - 852 4.4e-09 36.4 81.3 14 16 0.053 45 4.5 0.3 2 21 720 739 719 740 0.88 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF484-202 - 852 4.4e-09 36.4 81.3 15 16 0.0037 3.1 8.2 1.1 2 20 748 766 747 767 0.95 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF484-202 - 852 4.4e-09 36.4 81.3 16 16 0.49 4.2e+02 1.4 0.1 2 22 776 796 775 796 0.81 Zinc-finger double-stranded RNA-binding zf-met PF12874.7 25 ZNF484-202 - 852 7.6e-09 35.7 105.7 1 16 1.2 9.9e+02 0.4 0.2 2 16 280 294 279 295 0.88 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF484-202 - 852 7.6e-09 35.7 105.7 2 16 0.002 1.7 9.2 0.5 1 21 384 404 384 407 0.92 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF484-202 - 852 7.6e-09 35.7 105.7 3 16 0.012 10 6.7 0.4 1 22 412 433 412 435 0.91 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF484-202 - 852 7.6e-09 35.7 105.7 4 16 0.019 16 6.1 1.1 1 21 440 460 440 463 0.90 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF484-202 - 852 7.6e-09 35.7 105.7 5 16 0.0011 0.95 9.9 0.7 1 21 468 488 468 491 0.91 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF484-202 - 852 7.6e-09 35.7 105.7 6 16 0.00013 0.11 12.9 0.3 1 21 496 516 496 519 0.91 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF484-202 - 852 7.6e-09 35.7 105.7 7 16 0.44 3.7e+02 1.7 0.2 1 11 524 534 524 544 0.80 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF484-202 - 852 7.6e-09 35.7 105.7 8 16 0.03 25 5.4 0.5 1 23 552 574 552 575 0.91 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF484-202 - 852 7.6e-09 35.7 105.7 9 16 0.027 23 5.5 1.4 1 22 580 601 580 603 0.91 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF484-202 - 852 7.6e-09 35.7 105.7 10 16 0.00015 0.12 12.8 2.1 1 22 608 629 608 631 0.91 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF484-202 - 852 7.6e-09 35.7 105.7 11 16 0.007 6 7.4 0.3 1 21 636 656 636 659 0.91 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF484-202 - 852 7.6e-09 35.7 105.7 12 16 0.012 11 6.6 1.6 1 23 664 686 664 687 0.95 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF484-202 - 852 7.6e-09 35.7 105.7 13 16 0.0034 2.9 8.4 0.2 1 21 692 712 692 715 0.92 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF484-202 - 852 7.6e-09 35.7 105.7 14 16 0.036 31 5.2 0.8 1 20 720 739 720 743 0.90 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF484-202 - 852 7.6e-09 35.7 105.7 15 16 0.027 23 5.5 0.8 1 19 748 766 748 769 0.95 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF484-202 - 852 7.6e-09 35.7 105.7 16 16 0.9 7.7e+02 0.7 0.2 1 21 776 796 776 799 0.87 Zinc-finger of C2H2 type DUF3268 PF11672.8 118 ZNF484-202 - 852 7e-08 32.8 55.8 1 10 6.4 5.5e+03 -2.3 0.9 4 18 224 238 221 290 0.59 zinc-finger-containing domain DUF3268 PF11672.8 118 ZNF484-202 - 852 7e-08 32.8 55.8 2 10 0.00034 0.29 11.5 0.3 4 39 385 421 382 436 0.87 zinc-finger-containing domain DUF3268 PF11672.8 118 ZNF484-202 - 852 7e-08 32.8 55.8 3 10 0.0015 1.3 9.4 0.4 2 43 439 479 438 489 0.85 zinc-finger-containing domain DUF3268 PF11672.8 118 ZNF484-202 - 852 7e-08 32.8 55.8 4 10 0.0084 7.1 7.0 1.3 3 40 496 533 493 546 0.78 zinc-finger-containing domain DUF3268 PF11672.8 118 ZNF484-202 - 852 7e-08 32.8 55.8 5 10 0.00051 0.43 10.9 1.4 2 38 523 559 522 569 0.90 zinc-finger-containing domain DUF3268 PF11672.8 118 ZNF484-202 - 852 7e-08 32.8 55.8 6 10 0.0012 1 9.7 1.0 4 38 553 587 550 599 0.90 zinc-finger-containing domain DUF3268 PF11672.8 118 ZNF484-202 - 852 7e-08 32.8 55.8 7 10 0.00039 0.33 11.3 0.4 2 38 607 643 606 658 0.91 zinc-finger-containing domain DUF3268 PF11672.8 118 ZNF484-202 - 852 7e-08 32.8 55.8 8 10 0.00079 0.68 10.3 1.2 2 38 663 699 662 708 0.90 zinc-finger-containing domain DUF3268 PF11672.8 118 ZNF484-202 - 852 7e-08 32.8 55.8 9 10 0.049 42 4.5 0.2 8 39 697 728 697 745 0.76 zinc-finger-containing domain DUF3268 PF11672.8 118 ZNF484-202 - 852 7e-08 32.8 55.8 10 10 0.006 5.2 7.4 0.8 2 41 747 786 746 797 0.80 zinc-finger-containing domain # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF484-202.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF484-202.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF484-202.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF484-202.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF484-202.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:07:15 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZNF484-203 - 854 1.4e-114 369.9 143.9 1 21 0.022 19 5.9 0.3 5 22 165 185 164 187 0.73 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF484-203 - 854 1.4e-114 369.9 143.9 2 21 0.35 3e+02 2.1 1.1 5 22 215 232 214 232 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF484-203 - 854 1.4e-114 369.9 143.9 3 21 0.032 28 5.4 0.5 12 25 278 291 268 292 0.90 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF484-203 - 854 1.4e-114 369.9 143.9 4 21 3.2 2.7e+03 -0.9 0.1 14 24 329 339 320 341 0.65 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF484-203 - 854 1.4e-114 369.9 143.9 5 21 0.00026 0.22 12.0 0.1 7 22 350 365 349 366 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF484-203 - 854 1.4e-114 369.9 143.9 6 21 2e-08 1.7e-05 25.0 1.3 1 26 372 397 372 397 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF484-203 - 854 1.4e-114 369.9 143.9 7 21 2.8e-10 2.4e-07 30.9 0.2 2 24 401 423 400 425 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF484-203 - 854 1.4e-114 369.9 143.9 8 21 4.4e-10 3.7e-07 30.3 1.7 4 24 431 451 428 453 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF484-203 - 854 1.4e-114 369.9 143.9 9 21 4.3e-08 3.6e-05 24.0 1.4 5 26 460 481 457 481 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF484-203 - 854 1.4e-114 369.9 143.9 10 21 6.3e-08 5.4e-05 23.4 0.0 2 25 485 508 484 509 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF484-203 - 854 1.4e-114 369.9 143.9 11 21 2.1e-11 1.8e-08 34.4 0.7 1 25 512 536 512 536 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF484-203 - 854 1.4e-114 369.9 143.9 12 21 1.4e-08 1.2e-05 25.5 2.2 2 24 541 563 540 565 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF484-203 - 854 1.4e-114 369.9 143.9 13 21 1.7e-09 1.5e-06 28.4 1.2 2 24 569 591 568 593 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF484-203 - 854 1.4e-114 369.9 143.9 14 21 2.5e-10 2.1e-07 31.0 2.2 4 26 599 621 596 621 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF484-203 - 854 1.4e-114 369.9 143.9 15 21 9.6e-09 8.2e-06 26.0 0.6 5 25 628 648 625 649 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF484-203 - 854 1.4e-114 369.9 143.9 16 21 6.4e-11 5.5e-08 32.9 1.1 1 26 652 677 652 677 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF484-203 - 854 1.4e-114 369.9 143.9 17 21 2.7e-08 2.3e-05 24.6 1.3 5 25 684 704 681 705 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF484-203 - 854 1.4e-114 369.9 143.9 18 21 3.5e-08 3e-05 24.2 0.1 4 24 711 731 709 733 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF484-203 - 854 1.4e-114 369.9 143.9 19 21 1.5e-12 1.3e-09 38.1 1.4 1 24 736 759 736 761 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF484-203 - 854 1.4e-114 369.9 143.9 20 21 1.3e-06 0.0011 19.3 2.3 5 25 768 788 765 788 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF484-203 - 854 1.4e-114 369.9 143.9 21 21 2.4e-06 0.002 18.4 0.4 1 18 792 809 792 811 0.94 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZNF484-203 - 854 3.5e-88 285.4 142.3 1 20 3.5 3e+03 -1.0 0.2 1 8 178 185 178 187 0.85 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF484-203 - 854 3.5e-88 285.4 142.3 2 20 0.2 1.7e+02 3.0 0.4 2 16 226 240 225 242 0.80 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF484-203 - 854 3.5e-88 285.4 142.3 3 20 0.0015 1.2 9.7 0.1 1 16 281 296 281 297 0.94 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF484-203 - 854 3.5e-88 285.4 142.3 4 20 1.3 1.1e+03 0.4 0.3 1 18 330 347 330 352 0.78 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF484-203 - 854 3.5e-88 285.4 142.3 5 20 0.0042 3.6 8.2 0.1 5 23 362 380 360 380 0.95 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF484-203 - 854 3.5e-88 285.4 142.3 6 20 4.2e-08 3.6e-05 24.0 0.9 1 23 386 408 386 408 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF484-203 - 854 3.5e-88 285.4 142.3 7 20 5.5e-08 4.7e-05 23.6 1.2 1 23 414 436 414 436 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF484-203 - 854 3.5e-88 285.4 142.3 8 20 7.7e-09 6.6e-06 26.3 1.7 1 23 442 464 442 464 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF484-203 - 854 3.5e-88 285.4 142.3 9 20 5.8e-08 4.9e-05 23.5 0.9 1 23 470 492 470 492 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF484-203 - 854 3.5e-88 285.4 142.3 10 20 4.5e-09 3.8e-06 27.0 0.3 1 23 498 520 498 520 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF484-203 - 854 3.5e-88 285.4 142.3 11 20 6.9e-05 0.059 13.9 3.8 1 21 526 546 526 548 0.95 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF484-203 - 854 3.5e-88 285.4 142.3 12 20 7.9e-08 6.7e-05 23.1 0.3 1 23 554 576 554 576 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF484-203 - 854 3.5e-88 285.4 142.3 13 20 1.7e-06 0.0015 18.9 3.7 1 23 582 604 582 604 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF484-203 - 854 3.5e-88 285.4 142.3 14 20 1.8e-08 1.6e-05 25.1 1.8 1 23 610 632 610 632 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF484-203 - 854 3.5e-88 285.4 142.3 15 20 1.2e-08 1e-05 25.7 0.6 1 23 638 660 638 660 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF484-203 - 854 3.5e-88 285.4 142.3 16 20 1.8e-08 1.5e-05 25.2 1.9 1 23 666 688 666 688 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF484-203 - 854 3.5e-88 285.4 142.3 17 20 1.8e-08 1.5e-05 25.2 0.2 1 23 694 716 694 716 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF484-203 - 854 3.5e-88 285.4 142.3 18 20 3.1e-09 2.7e-06 27.5 2.2 1 23 722 744 722 744 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF484-203 - 854 3.5e-88 285.4 142.3 19 20 2.1e-07 0.00018 21.8 3.6 1 23 750 772 750 772 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF484-203 - 854 3.5e-88 285.4 142.3 20 20 2e-07 0.00017 21.8 0.1 1 23 778 800 778 800 0.98 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZNF484-203 - 854 4.4e-42 139.1 128.1 1 19 7 5.9e+03 -1.3 0.1 2 9 179 186 178 188 0.81 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF484-203 - 854 4.4e-42 139.1 128.1 2 19 0.35 3e+02 2.7 0.4 2 16 226 240 225 242 0.82 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF484-203 - 854 4.4e-42 139.1 128.1 3 19 0.038 32 5.7 0.1 1 16 281 296 281 298 0.87 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF484-203 - 854 4.4e-42 139.1 128.1 4 19 1 8.6e+02 1.3 0.0 5 23 362 380 361 381 0.91 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF484-203 - 854 4.4e-42 139.1 128.1 5 19 1.8e-05 0.015 16.0 0.7 1 23 386 408 386 409 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF484-203 - 854 4.4e-42 139.1 128.1 6 19 0.00013 0.11 13.4 0.9 1 23 414 436 414 437 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF484-203 - 854 4.4e-42 139.1 128.1 7 19 5.4e-05 0.046 14.6 1.4 1 23 442 464 442 465 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF484-203 - 854 4.4e-42 139.1 128.1 8 19 8.2e-05 0.07 14.0 0.7 1 23 470 492 470 493 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF484-203 - 854 4.4e-42 139.1 128.1 9 19 3.2e-06 0.0028 18.4 0.2 1 23 498 520 498 521 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF484-203 - 854 4.4e-42 139.1 128.1 10 19 0.0031 2.6 9.1 3.4 1 21 526 546 526 548 0.89 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF484-203 - 854 4.4e-42 139.1 128.1 11 19 0.00016 0.13 13.1 0.4 1 23 554 576 554 577 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF484-203 - 854 4.4e-42 139.1 128.1 12 19 0.0019 1.6 9.8 3.0 1 23 582 604 582 605 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF484-203 - 854 4.4e-42 139.1 128.1 13 19 6.6e-06 0.0057 17.4 1.6 1 23 610 632 610 633 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF484-203 - 854 4.4e-42 139.1 128.1 14 19 6.5e-05 0.055 14.3 0.4 1 23 638 660 638 661 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF484-203 - 854 4.4e-42 139.1 128.1 15 19 2.7e-05 0.023 15.5 1.4 1 23 666 688 666 689 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF484-203 - 854 4.4e-42 139.1 128.1 16 19 6.2e-05 0.053 14.4 0.2 1 23 694 716 694 717 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF484-203 - 854 4.4e-42 139.1 128.1 17 19 1e-05 0.0089 16.8 1.3 1 23 722 744 722 745 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF484-203 - 854 4.4e-42 139.1 128.1 18 19 0.00039 0.34 11.9 2.8 1 23 750 772 750 773 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF484-203 - 854 4.4e-42 139.1 128.1 19 19 0.00049 0.42 11.6 0.1 1 23 778 800 778 801 0.92 C2H2-type zinc finger KRAB PF01352.27 42 ZNF484-203 - 854 1.7e-22 78.8 0.6 1 1 4.5e-25 3.8e-22 77.6 0.6 1 42 9 50 9 50 0.99 KRAB box Zn-ribbon_8 PF09723.10 40 ZNF484-203 - 854 2.9e-20 72.1 78.0 1 15 0.059 50 4.1 0.0 27 37 177 188 154 197 0.65 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF484-203 - 854 2.9e-20 72.1 78.0 2 15 0.12 1e+02 3.1 0.2 14 36 212 234 209 241 0.65 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF484-203 - 854 2.9e-20 72.1 78.0 3 15 0.52 4.4e+02 1.1 0.9 7 16 282 291 270 301 0.75 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF484-203 - 854 2.9e-20 72.1 78.0 4 15 1.2e-05 0.01 15.9 1.7 6 36 386 423 385 427 0.87 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF484-203 - 854 2.9e-20 72.1 78.0 5 15 0.00023 0.19 11.8 2.7 6 34 442 477 441 483 0.91 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF484-203 - 854 2.9e-20 72.1 78.0 6 15 4.9e-05 0.042 14.0 0.2 6 35 470 506 469 511 0.90 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF484-203 - 854 2.9e-20 72.1 78.0 7 15 6.4e-05 0.054 13.6 0.7 6 34 498 533 497 538 0.92 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF484-203 - 854 2.9e-20 72.1 78.0 8 15 0.00062 0.53 10.5 5.0 6 34 526 561 525 566 0.87 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF484-203 - 854 2.9e-20 72.1 78.0 9 15 0.00024 0.21 11.7 3.1 6 34 554 589 552 594 0.90 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF484-203 - 854 2.9e-20 72.1 78.0 10 15 0.0027 2.3 8.4 3.0 6 38 582 621 581 623 0.81 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF484-203 - 854 2.9e-20 72.1 78.0 11 15 0.00011 0.094 12.8 3.0 6 35 610 646 609 650 0.91 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF484-203 - 854 2.9e-20 72.1 78.0 12 15 1.8e-06 0.0015 18.6 2.1 6 38 638 677 637 679 0.92 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF484-203 - 854 2.9e-20 72.1 78.0 13 15 2.4e-05 0.021 14.9 1.2 6 34 694 729 693 735 0.88 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF484-203 - 854 2.9e-20 72.1 78.0 14 15 0.00024 0.2 11.8 2.6 6 35 750 786 749 791 0.89 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF484-203 - 854 2.9e-20 72.1 78.0 15 15 0.0052 4.4 7.5 0.1 6 29 778 808 777 813 0.79 Zinc ribbon domain zf-C2H2_6 PF13912.6 27 ZNF484-203 - 854 1.2e-19 69.8 116.3 1 19 0.19 1.6e+02 2.4 0.4 2 9 178 185 178 188 0.88 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF484-203 - 854 1.2e-19 69.8 116.3 2 19 0.18 1.6e+02 2.5 0.1 3 17 226 240 226 242 0.79 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF484-203 - 854 1.2e-19 69.8 116.3 3 19 0.0054 4.6 7.4 1.0 2 11 281 290 280 292 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF484-203 - 854 1.2e-19 69.8 116.3 4 19 1.9 1.7e+03 -0.8 0.0 5 24 361 380 361 381 0.84 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF484-203 - 854 1.2e-19 69.8 116.3 5 19 0.00043 0.37 10.9 1.1 1 13 385 397 385 409 0.80 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF484-203 - 854 1.2e-19 69.8 116.3 6 19 0.0093 8 6.6 0.3 2 11 414 423 414 424 0.95 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF484-203 - 854 1.2e-19 69.8 116.3 7 19 0.015 13 5.9 0.5 2 11 442 451 442 452 0.97 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF484-203 - 854 1.2e-19 69.8 116.3 8 19 0.00013 0.11 12.5 0.4 2 24 470 492 470 495 0.85 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF484-203 - 854 1.2e-19 69.8 116.3 9 19 0.0003 0.26 11.3 0.1 2 24 498 520 498 523 0.89 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF484-203 - 854 1.2e-19 69.8 116.3 10 19 0.019 16 5.6 2.9 2 24 526 548 526 551 0.83 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF484-203 - 854 1.2e-19 69.8 116.3 11 19 0.00054 0.46 10.5 0.2 1 11 553 563 553 577 0.95 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF484-203 - 854 1.2e-19 69.8 116.3 12 19 0.012 10 6.2 0.6 2 11 582 591 582 591 0.95 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF484-203 - 854 1.2e-19 69.8 116.3 13 19 0.00033 0.28 11.2 1.0 2 12 610 620 610 621 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF484-203 - 854 1.2e-19 69.8 116.3 14 19 0.0014 1.2 9.2 0.4 2 24 638 660 638 663 0.89 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF484-203 - 854 1.2e-19 69.8 116.3 15 19 0.048 41 4.3 0.7 2 12 666 676 666 688 0.88 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF484-203 - 854 1.2e-19 69.8 116.3 16 19 9.7e-05 0.083 12.9 0.6 1 22 693 714 693 718 0.82 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF484-203 - 854 1.2e-19 69.8 116.3 17 19 0.0015 1.3 9.1 0.4 2 11 722 731 722 744 0.89 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF484-203 - 854 1.2e-19 69.8 116.3 18 19 0.018 15 5.7 0.9 2 11 750 759 750 769 0.96 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF484-203 - 854 1.2e-19 69.8 116.3 19 19 0.0014 1.2 9.2 0.2 2 25 778 801 778 803 0.88 C2H2-type zinc finger zf-C2H2_jaz PF12171.8 27 ZNF484-203 - 854 4.6e-09 36.3 81.3 1 16 0.27 2.3e+02 2.2 0.1 1 18 280 297 280 298 0.83 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF484-203 - 854 4.6e-09 36.3 81.3 2 16 0.0042 3.6 8.0 0.4 2 22 386 406 385 406 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF484-203 - 854 4.6e-09 36.3 81.3 3 16 0.0031 2.6 8.4 0.1 2 22 414 434 413 434 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF484-203 - 854 4.6e-09 36.3 81.3 4 16 0.00098 0.84 10.0 0.3 2 22 442 462 441 462 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF484-203 - 854 4.6e-09 36.3 81.3 5 16 0.041 35 4.8 0.2 2 22 470 490 469 490 0.87 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF484-203 - 854 4.6e-09 36.3 81.3 6 16 0.0013 1.1 9.6 0.0 2 22 498 518 497 518 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF484-203 - 854 4.6e-09 36.3 81.3 7 16 1.9 1.6e+03 -0.5 0.1 2 11 526 535 525 546 0.82 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF484-203 - 854 4.6e-09 36.3 81.3 8 16 0.04 34 4.9 0.4 2 22 554 574 553 574 0.90 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF484-203 - 854 4.6e-09 36.3 81.3 9 16 0.057 48 4.4 0.7 2 22 582 602 581 602 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF484-203 - 854 4.6e-09 36.3 81.3 10 16 0.00095 0.81 10.0 0.5 2 21 610 629 609 630 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF484-203 - 854 4.6e-09 36.3 81.3 11 16 0.13 1.1e+02 3.2 0.1 2 22 638 658 637 658 0.86 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF484-203 - 854 4.6e-09 36.3 81.3 12 16 0.39 3.3e+02 1.7 0.6 2 24 666 688 665 688 0.91 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF484-203 - 854 4.6e-09 36.3 81.3 13 16 0.011 9.7 6.6 0.2 2 22 694 714 693 714 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF484-203 - 854 4.6e-09 36.3 81.3 14 16 0.053 45 4.5 0.3 2 21 722 741 721 742 0.88 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF484-203 - 854 4.6e-09 36.3 81.3 15 16 0.0037 3.1 8.2 1.1 2 20 750 768 749 769 0.95 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF484-203 - 854 4.6e-09 36.3 81.3 16 16 0.5 4.2e+02 1.4 0.1 2 22 778 798 777 798 0.81 Zinc-finger double-stranded RNA-binding zf-met PF12874.7 25 ZNF484-203 - 854 8e-09 35.6 105.7 1 16 1.2 9.9e+02 0.4 0.2 2 16 282 296 281 297 0.88 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF484-203 - 854 8e-09 35.6 105.7 2 16 0.002 1.7 9.2 0.5 1 21 386 406 386 409 0.92 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF484-203 - 854 8e-09 35.6 105.7 3 16 0.012 10 6.7 0.4 1 22 414 435 414 437 0.91 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF484-203 - 854 8e-09 35.6 105.7 4 16 0.019 16 6.1 1.1 1 21 442 462 442 465 0.90 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF484-203 - 854 8e-09 35.6 105.7 5 16 0.0011 0.95 9.9 0.7 1 21 470 490 470 493 0.91 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF484-203 - 854 8e-09 35.6 105.7 6 16 0.00013 0.11 12.9 0.3 1 21 498 518 498 521 0.91 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF484-203 - 854 8e-09 35.6 105.7 7 16 0.44 3.7e+02 1.7 0.2 1 11 526 536 526 546 0.80 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF484-203 - 854 8e-09 35.6 105.7 8 16 0.03 26 5.4 0.5 1 23 554 576 554 577 0.91 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF484-203 - 854 8e-09 35.6 105.7 9 16 0.027 23 5.5 1.4 1 22 582 603 582 605 0.91 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF484-203 - 854 8e-09 35.6 105.7 10 16 0.00015 0.12 12.7 2.1 1 22 610 631 610 633 0.91 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF484-203 - 854 8e-09 35.6 105.7 11 16 0.007 6 7.4 0.3 1 21 638 658 638 661 0.91 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF484-203 - 854 8e-09 35.6 105.7 12 16 0.012 11 6.6 1.6 1 23 666 688 666 689 0.95 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF484-203 - 854 8e-09 35.6 105.7 13 16 0.0034 2.9 8.4 0.2 1 21 694 714 694 717 0.92 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF484-203 - 854 8e-09 35.6 105.7 14 16 0.036 31 5.2 0.8 1 20 722 741 722 745 0.90 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF484-203 - 854 8e-09 35.6 105.7 15 16 0.027 23 5.5 0.8 1 19 750 768 750 771 0.95 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF484-203 - 854 8e-09 35.6 105.7 16 16 0.9 7.7e+02 0.7 0.2 1 21 778 798 778 801 0.87 Zinc-finger of C2H2 type DUF3268 PF11672.8 118 ZNF484-203 - 854 7.2e-08 32.8 55.8 1 10 6.5 5.5e+03 -2.3 0.9 4 18 226 240 223 292 0.59 zinc-finger-containing domain DUF3268 PF11672.8 118 ZNF484-203 - 854 7.2e-08 32.8 55.8 2 10 0.00034 0.29 11.5 0.3 4 39 387 423 384 438 0.87 zinc-finger-containing domain DUF3268 PF11672.8 118 ZNF484-203 - 854 7.2e-08 32.8 55.8 3 10 0.0015 1.3 9.4 0.4 2 43 441 481 440 491 0.85 zinc-finger-containing domain DUF3268 PF11672.8 118 ZNF484-203 - 854 7.2e-08 32.8 55.8 4 10 0.0082 7 7.0 1.3 3 40 498 535 495 548 0.78 zinc-finger-containing domain DUF3268 PF11672.8 118 ZNF484-203 - 854 7.2e-08 32.8 55.8 5 10 0.00041 0.35 11.2 1.3 2 38 525 561 524 579 0.89 zinc-finger-containing domain DUF3268 PF11672.8 118 ZNF484-203 - 854 7.2e-08 32.8 55.8 6 10 0.0012 1.1 9.7 1.0 4 38 555 589 552 601 0.90 zinc-finger-containing domain DUF3268 PF11672.8 118 ZNF484-203 - 854 7.2e-08 32.8 55.8 7 10 0.00039 0.34 11.3 0.4 2 38 609 645 608 660 0.91 zinc-finger-containing domain DUF3268 PF11672.8 118 ZNF484-203 - 854 7.2e-08 32.8 55.8 8 10 0.0008 0.68 10.3 1.2 2 38 665 701 664 710 0.90 zinc-finger-containing domain DUF3268 PF11672.8 118 ZNF484-203 - 854 7.2e-08 32.8 55.8 9 10 0.049 42 4.5 0.3 8 39 699 730 699 747 0.76 zinc-finger-containing domain DUF3268 PF11672.8 118 ZNF484-203 - 854 7.2e-08 32.8 55.8 10 10 0.0061 5.2 7.4 0.8 2 41 749 788 748 799 0.80 zinc-finger-containing domain # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF484-203.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF484-203.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF484-203.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF484-203.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF484-203.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:07:16 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZNF484-204 - 816 4.7e-115 371.4 143.9 1 21 0.02 18 6.0 0.3 5 22 127 147 126 149 0.73 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF484-204 - 816 4.7e-115 371.4 143.9 2 21 0.32 2.8e+02 2.2 1.1 5 22 177 194 176 194 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF484-204 - 816 4.7e-115 371.4 143.9 3 21 0.029 26 5.4 0.5 12 25 240 253 230 254 0.90 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF484-204 - 816 4.7e-115 371.4 143.9 4 21 2.9 2.6e+03 -0.8 0.1 14 24 291 301 282 303 0.65 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF484-204 - 816 4.7e-115 371.4 143.9 5 21 0.00024 0.21 12.1 0.1 7 22 312 327 311 328 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF484-204 - 816 4.7e-115 371.4 143.9 6 21 1.8e-08 1.6e-05 25.1 1.3 1 26 334 359 334 359 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF484-204 - 816 4.7e-115 371.4 143.9 7 21 2.5e-10 2.2e-07 31.0 0.2 2 24 363 385 362 387 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF484-204 - 816 4.7e-115 371.4 143.9 8 21 4e-10 3.5e-07 30.3 1.7 4 24 393 413 390 415 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF484-204 - 816 4.7e-115 371.4 143.9 9 21 3.8e-08 3.4e-05 24.0 1.4 5 26 422 443 419 443 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF484-204 - 816 4.7e-115 371.4 143.9 10 21 5.7e-08 5.1e-05 23.5 0.0 2 25 447 470 446 471 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF484-204 - 816 4.7e-115 371.4 143.9 11 21 1.9e-11 1.7e-08 34.5 0.7 1 25 474 498 474 498 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF484-204 - 816 4.7e-115 371.4 143.9 12 21 1.3e-08 1.1e-05 25.6 2.2 2 24 503 525 502 527 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF484-204 - 816 4.7e-115 371.4 143.9 13 21 1.6e-09 1.4e-06 28.4 1.2 2 24 531 553 530 555 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF484-204 - 816 4.7e-115 371.4 143.9 14 21 2.3e-10 2e-07 31.1 2.2 4 26 561 583 558 583 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF484-204 - 816 4.7e-115 371.4 143.9 15 21 8.7e-09 7.8e-06 26.1 0.6 5 25 590 610 587 611 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF484-204 - 816 4.7e-115 371.4 143.9 16 21 5.8e-11 5.2e-08 33.0 1.1 1 26 614 639 614 639 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF484-204 - 816 4.7e-115 371.4 143.9 17 21 2.5e-08 2.2e-05 24.7 1.3 5 25 646 666 643 667 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF484-204 - 816 4.7e-115 371.4 143.9 18 21 3.2e-08 2.8e-05 24.3 0.1 4 24 673 693 671 695 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF484-204 - 816 4.7e-115 371.4 143.9 19 21 1.3e-12 1.2e-09 38.2 1.4 1 24 698 721 698 723 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF484-204 - 816 4.7e-115 371.4 143.9 20 21 1.1e-06 0.001 19.4 2.3 5 25 730 750 727 750 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF484-204 - 816 4.7e-115 371.4 143.9 21 21 2.2e-06 0.0019 18.5 0.4 1 18 754 771 754 773 0.94 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZNF484-204 - 816 1.3e-88 286.8 142.3 1 20 3.2 2.9e+03 -0.9 0.2 1 8 140 147 140 149 0.85 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF484-204 - 816 1.3e-88 286.8 142.3 2 20 0.18 1.6e+02 3.0 0.4 2 16 188 202 187 204 0.80 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF484-204 - 816 1.3e-88 286.8 142.3 3 20 0.0013 1.2 9.8 0.1 1 16 243 258 243 259 0.94 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF484-204 - 816 1.3e-88 286.8 142.3 4 20 1.2 1.1e+03 0.5 0.3 1 18 292 309 292 314 0.78 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF484-204 - 816 1.3e-88 286.8 142.3 5 20 0.0038 3.4 8.3 0.1 5 23 324 342 322 342 0.95 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF484-204 - 816 1.3e-88 286.8 142.3 6 20 3.8e-08 3.4e-05 24.1 0.9 1 23 348 370 348 370 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF484-204 - 816 1.3e-88 286.8 142.3 7 20 5e-08 4.5e-05 23.7 1.2 1 23 376 398 376 398 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF484-204 - 816 1.3e-88 286.8 142.3 8 20 7e-09 6.3e-06 26.4 1.7 1 23 404 426 404 426 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF484-204 - 816 1.3e-88 286.8 142.3 9 20 5.2e-08 4.7e-05 23.6 0.9 1 23 432 454 432 454 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF484-204 - 816 1.3e-88 286.8 142.3 10 20 4e-09 3.6e-06 27.1 0.3 1 23 460 482 460 482 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF484-204 - 816 1.3e-88 286.8 142.3 11 20 6.2e-05 0.056 13.9 3.8 1 21 488 508 488 510 0.95 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF484-204 - 816 1.3e-88 286.8 142.3 12 20 7.1e-08 6.4e-05 23.2 0.3 1 23 516 538 516 538 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF484-204 - 816 1.3e-88 286.8 142.3 13 20 1.6e-06 0.0014 19.0 3.7 1 23 544 566 544 566 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF484-204 - 816 1.3e-88 286.8 142.3 14 20 1.7e-08 1.5e-05 25.2 1.8 1 23 572 594 572 594 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF484-204 - 816 1.3e-88 286.8 142.3 15 20 1.1e-08 9.8e-06 25.8 0.6 1 23 600 622 600 622 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF484-204 - 816 1.3e-88 286.8 142.3 16 20 1.6e-08 1.4e-05 25.2 1.9 1 23 628 650 628 650 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF484-204 - 816 1.3e-88 286.8 142.3 17 20 1.6e-08 1.4e-05 25.2 0.2 1 23 656 678 656 678 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF484-204 - 816 1.3e-88 286.8 142.3 18 20 2.8e-09 2.5e-06 27.6 2.2 1 23 684 706 684 706 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF484-204 - 816 1.3e-88 286.8 142.3 19 20 1.9e-07 0.00017 21.9 3.6 1 23 712 734 712 734 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF484-204 - 816 1.3e-88 286.8 142.3 20 20 1.8e-07 0.00017 21.9 0.1 1 23 740 762 740 762 0.98 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZNF484-204 - 816 1.7e-42 140.4 128.1 1 19 6.3 5.7e+03 -1.3 0.1 2 9 141 148 140 150 0.81 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF484-204 - 816 1.7e-42 140.4 128.1 2 19 0.32 2.8e+02 2.8 0.4 2 16 188 202 187 204 0.82 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF484-204 - 816 1.7e-42 140.4 128.1 3 19 0.034 31 5.8 0.1 1 16 243 258 243 260 0.87 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF484-204 - 816 1.7e-42 140.4 128.1 4 19 0.91 8.2e+02 1.3 0.0 5 23 324 342 323 343 0.91 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF484-204 - 816 1.7e-42 140.4 128.1 5 19 1.6e-05 0.015 16.1 0.7 1 23 348 370 348 371 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF484-204 - 816 1.7e-42 140.4 128.1 6 19 0.00012 0.11 13.4 0.9 1 23 376 398 376 399 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF484-204 - 816 1.7e-42 140.4 128.1 7 19 4.8e-05 0.043 14.7 1.4 1 23 404 426 404 427 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF484-204 - 816 1.7e-42 140.4 128.1 8 19 7.4e-05 0.067 14.1 0.7 1 23 432 454 432 455 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF484-204 - 816 1.7e-42 140.4 128.1 9 19 2.9e-06 0.0026 18.4 0.2 1 23 460 482 460 483 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF484-204 - 816 1.7e-42 140.4 128.1 10 19 0.0028 2.5 9.2 3.4 1 21 488 508 488 510 0.89 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF484-204 - 816 1.7e-42 140.4 128.1 11 19 0.00014 0.13 13.2 0.4 1 23 516 538 516 539 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF484-204 - 816 1.7e-42 140.4 128.1 12 19 0.0017 1.5 9.8 3.0 1 23 544 566 544 567 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF484-204 - 816 1.7e-42 140.4 128.1 13 19 6e-06 0.0054 17.5 1.6 1 23 572 594 572 595 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF484-204 - 816 1.7e-42 140.4 128.1 14 19 5.9e-05 0.052 14.4 0.4 1 23 600 622 600 623 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF484-204 - 816 1.7e-42 140.4 128.1 15 19 2.4e-05 0.022 15.6 1.4 1 23 628 650 628 651 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF484-204 - 816 1.7e-42 140.4 128.1 16 19 5.6e-05 0.05 14.4 0.2 1 23 656 678 656 679 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF484-204 - 816 1.7e-42 140.4 128.1 17 19 9.5e-06 0.0085 16.9 1.3 1 23 684 706 684 707 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF484-204 - 816 1.7e-42 140.4 128.1 18 19 0.00036 0.32 12.0 2.8 1 23 712 734 712 735 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF484-204 - 816 1.7e-42 140.4 128.1 19 19 0.00044 0.4 11.7 0.1 1 23 740 762 740 763 0.92 C2H2-type zinc finger Zn-ribbon_8 PF09723.10 40 ZNF484-204 - 816 2.4e-20 72.4 78.7 1 15 0.053 48 4.2 0.0 27 37 139 150 116 159 0.65 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF484-204 - 816 2.4e-20 72.4 78.7 2 15 0.11 99 3.2 0.2 14 36 174 196 171 203 0.65 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF484-204 - 816 2.4e-20 72.4 78.7 3 15 0.47 4.2e+02 1.2 0.9 7 16 244 253 232 263 0.75 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF484-204 - 816 2.4e-20 72.4 78.7 4 15 1.1e-05 0.0096 16.0 1.7 6 36 348 385 347 389 0.87 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF484-204 - 816 2.4e-20 72.4 78.7 5 15 0.00018 0.16 12.1 2.5 6 34 404 439 403 445 0.91 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF484-204 - 816 2.4e-20 72.4 78.7 6 15 4.4e-05 0.039 14.1 0.2 6 35 432 468 431 476 0.91 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF484-204 - 816 2.4e-20 72.4 78.7 7 15 6.1e-05 0.055 13.6 0.8 6 34 460 495 459 500 0.92 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF484-204 - 816 2.4e-20 72.4 78.7 8 15 0.0011 1 9.5 5.6 6 34 488 523 487 525 0.88 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF484-204 - 816 2.4e-20 72.4 78.7 9 15 0.00026 0.24 11.6 3.3 6 34 516 551 515 556 0.89 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF484-204 - 816 2.4e-20 72.4 78.7 10 15 0.003 2.7 8.2 3.2 6 38 544 583 543 584 0.81 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF484-204 - 816 2.4e-20 72.4 78.7 11 15 0.00032 0.29 11.3 3.1 6 34 572 607 571 607 0.94 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF484-204 - 816 2.4e-20 72.4 78.7 12 15 1.7e-06 0.0015 18.6 2.1 6 38 600 639 599 641 0.92 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF484-204 - 816 2.4e-20 72.4 78.7 13 15 2.2e-05 0.02 15.0 1.2 6 34 656 691 655 697 0.88 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF484-204 - 816 2.4e-20 72.4 78.7 14 15 0.00023 0.21 11.8 2.6 6 35 712 748 711 752 0.89 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF484-204 - 816 2.4e-20 72.4 78.7 15 15 0.0046 4.1 7.6 0.1 6 29 740 770 739 775 0.79 Zinc ribbon domain zf-C2H2_6 PF13912.6 27 ZNF484-204 - 816 3.7e-20 71.4 116.0 1 19 0.17 1.5e+02 2.5 0.4 2 9 140 147 140 150 0.88 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF484-204 - 816 3.7e-20 71.4 116.0 2 19 0.17 1.5e+02 2.5 0.1 3 17 188 202 188 204 0.79 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF484-204 - 816 3.7e-20 71.4 116.0 3 19 0.0049 4.4 7.4 1.0 2 11 243 252 242 254 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF484-204 - 816 3.7e-20 71.4 116.0 4 19 1.8 1.6e+03 -0.7 0.0 5 24 323 342 323 343 0.84 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF484-204 - 816 3.7e-20 71.4 116.0 5 19 0.00039 0.35 10.9 1.1 1 13 347 359 347 371 0.80 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF484-204 - 816 3.7e-20 71.4 116.0 6 19 0.0085 7.6 6.7 0.3 2 11 376 385 376 386 0.95 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF484-204 - 816 3.7e-20 71.4 116.0 7 19 0.014 13 6.0 0.5 2 11 404 413 404 414 0.97 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF484-204 - 816 3.7e-20 71.4 116.0 8 19 0.00012 0.11 12.6 0.4 2 24 432 454 432 457 0.85 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF484-204 - 816 3.7e-20 71.4 116.0 9 19 0.00027 0.24 11.4 0.1 2 24 460 482 460 485 0.89 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF484-204 - 816 3.7e-20 71.4 116.0 10 19 0.017 15 5.7 2.9 2 24 488 510 488 513 0.83 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF484-204 - 816 3.7e-20 71.4 116.0 11 19 0.00049 0.44 10.6 0.2 1 11 515 525 515 539 0.95 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF484-204 - 816 3.7e-20 71.4 116.0 12 19 0.011 9.8 6.3 0.6 2 11 544 553 544 553 0.95 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF484-204 - 816 3.7e-20 71.4 116.0 13 19 0.0003 0.27 11.3 1.0 2 12 572 582 572 583 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF484-204 - 816 3.7e-20 71.4 116.0 14 19 0.0013 1.1 9.3 0.4 2 24 600 622 600 625 0.89 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF484-204 - 816 3.7e-20 71.4 116.0 15 19 0.044 39 4.4 0.7 2 12 628 638 628 650 0.88 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF484-204 - 816 3.7e-20 71.4 116.0 16 19 8.8e-05 0.079 13.0 0.6 1 22 655 676 655 680 0.82 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF484-204 - 816 3.7e-20 71.4 116.0 17 19 0.0013 1.2 9.2 0.4 2 11 684 693 684 706 0.89 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF484-204 - 816 3.7e-20 71.4 116.0 18 19 0.014 13 5.9 0.7 2 11 712 721 712 732 0.95 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF484-204 - 816 3.7e-20 71.4 116.0 19 19 0.0013 1.1 9.3 0.2 2 25 740 763 740 765 0.88 C2H2-type zinc finger zf-C2H2_jaz PF12171.8 27 ZNF484-204 - 816 2.1e-09 37.4 81.3 1 16 0.25 2.2e+02 2.3 0.1 1 18 242 259 242 260 0.83 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF484-204 - 816 2.1e-09 37.4 81.3 2 16 0.0038 3.4 8.1 0.4 2 22 348 368 347 368 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF484-204 - 816 2.1e-09 37.4 81.3 3 16 0.0028 2.5 8.5 0.1 2 22 376 396 375 396 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF484-204 - 816 2.1e-09 37.4 81.3 4 16 0.00089 0.8 10.1 0.3 2 22 404 424 403 424 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF484-204 - 816 2.1e-09 37.4 81.3 5 16 0.037 33 4.9 0.2 2 22 432 452 431 452 0.87 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF484-204 - 816 2.1e-09 37.4 81.3 6 16 0.0012 1 9.7 0.0 2 22 460 480 459 480 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF484-204 - 816 2.1e-09 37.4 81.3 7 16 1.7 1.6e+03 -0.4 0.1 2 11 488 497 487 508 0.82 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF484-204 - 816 2.1e-09 37.4 81.3 8 16 0.036 32 5.0 0.4 2 22 516 536 515 536 0.90 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF484-204 - 816 2.1e-09 37.4 81.3 9 16 0.051 46 4.5 0.7 2 22 544 564 543 564 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF484-204 - 816 2.1e-09 37.4 81.3 10 16 0.00086 0.77 10.1 0.5 2 21 572 591 571 592 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF484-204 - 816 2.1e-09 37.4 81.3 11 16 0.12 1.1e+02 3.3 0.1 2 22 600 620 599 620 0.86 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF484-204 - 816 2.1e-09 37.4 81.3 12 16 0.35 3.1e+02 1.8 0.6 2 24 628 650 627 650 0.91 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF484-204 - 816 2.1e-09 37.4 81.3 13 16 0.01 9.2 6.7 0.2 2 22 656 676 655 676 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF484-204 - 816 2.1e-09 37.4 81.3 14 16 0.048 43 4.6 0.3 2 21 684 703 683 704 0.88 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF484-204 - 816 2.1e-09 37.4 81.3 15 16 0.0033 3 8.2 1.1 2 20 712 730 711 731 0.95 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF484-204 - 816 2.1e-09 37.4 81.3 16 16 0.45 4e+02 1.5 0.1 2 22 740 760 739 760 0.81 Zinc-finger double-stranded RNA-binding zf-met PF12874.7 25 ZNF484-204 - 816 3.7e-09 36.7 105.7 1 16 1.1 9.4e+02 0.4 0.2 2 16 244 258 243 259 0.88 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF484-204 - 816 3.7e-09 36.7 105.7 2 16 0.0018 1.6 9.2 0.5 1 21 348 368 348 371 0.92 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF484-204 - 816 3.7e-09 36.7 105.7 3 16 0.011 9.5 6.8 0.4 1 22 376 397 376 399 0.91 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF484-204 - 816 3.7e-09 36.7 105.7 4 16 0.017 15 6.1 1.1 1 21 404 424 404 427 0.90 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF484-204 - 816 3.7e-09 36.7 105.7 5 16 0.001 0.91 10.0 0.7 1 21 432 452 432 455 0.91 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF484-204 - 816 3.7e-09 36.7 105.7 6 16 0.00012 0.1 13.0 0.3 1 21 460 480 460 483 0.91 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF484-204 - 816 3.7e-09 36.7 105.7 7 16 0.4 3.6e+02 1.8 0.2 1 11 488 498 488 508 0.80 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF484-204 - 816 3.7e-09 36.7 105.7 8 16 0.027 24 5.5 0.5 1 23 516 538 516 539 0.91 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF484-204 - 816 3.7e-09 36.7 105.7 9 16 0.025 22 5.6 1.4 1 22 544 565 544 567 0.91 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF484-204 - 816 3.7e-09 36.7 105.7 10 16 0.00013 0.12 12.8 2.1 1 22 572 593 572 595 0.91 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF484-204 - 816 3.7e-09 36.7 105.7 11 16 0.0063 5.7 7.5 0.3 1 21 600 620 600 623 0.91 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF484-204 - 816 3.7e-09 36.7 105.7 12 16 0.011 10 6.7 1.6 1 23 628 650 628 651 0.95 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF484-204 - 816 3.7e-09 36.7 105.7 13 16 0.0031 2.7 8.5 0.2 1 21 656 676 656 679 0.92 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF484-204 - 816 3.7e-09 36.7 105.7 14 16 0.032 29 5.2 0.8 1 20 684 703 684 707 0.90 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF484-204 - 816 3.7e-09 36.7 105.7 15 16 0.025 22 5.6 0.8 1 19 712 730 712 733 0.95 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF484-204 - 816 3.7e-09 36.7 105.7 16 16 0.82 7.3e+02 0.8 0.2 1 21 740 760 740 763 0.87 Zinc-finger of C2H2 type DUF3268 PF11672.8 118 ZNF484-204 - 816 6.1e-08 33.0 56.2 1 10 6.5 5.9e+03 -2.4 1.1 4 18 188 202 185 254 0.59 zinc-finger-containing domain DUF3268 PF11672.8 118 ZNF484-204 - 816 6.1e-08 33.0 56.2 2 10 0.0003 0.27 11.6 0.3 4 39 349 385 346 400 0.87 zinc-finger-containing domain DUF3268 PF11672.8 118 ZNF484-204 - 816 6.1e-08 33.0 56.2 3 10 0.0014 1.2 9.5 0.4 2 43 403 443 402 453 0.85 zinc-finger-containing domain DUF3268 PF11672.8 118 ZNF484-204 - 816 6.1e-08 33.0 56.2 4 10 0.0077 6.9 7.0 1.3 3 40 460 497 457 510 0.78 zinc-finger-containing domain DUF3268 PF11672.8 118 ZNF484-204 - 816 6.1e-08 33.0 56.2 5 10 0.00047 0.42 11.0 1.4 2 38 487 523 486 533 0.90 zinc-finger-containing domain DUF3268 PF11672.8 118 ZNF484-204 - 816 6.1e-08 33.0 56.2 6 10 0.0011 1 9.7 1.0 4 38 517 551 514 563 0.90 zinc-finger-containing domain DUF3268 PF11672.8 118 ZNF484-204 - 816 6.1e-08 33.0 56.2 7 10 0.00036 0.32 11.3 0.4 2 38 571 607 570 622 0.91 zinc-finger-containing domain DUF3268 PF11672.8 118 ZNF484-204 - 816 6.1e-08 33.0 56.2 8 10 0.00072 0.65 10.3 1.2 2 38 627 663 626 672 0.90 zinc-finger-containing domain DUF3268 PF11672.8 118 ZNF484-204 - 816 6.1e-08 33.0 56.2 9 10 0.044 40 4.6 0.3 8 39 661 692 661 709 0.76 zinc-finger-containing domain DUF3268 PF11672.8 118 ZNF484-204 - 816 6.1e-08 33.0 56.2 10 10 0.0055 4.9 7.5 0.8 2 41 711 750 710 761 0.80 zinc-finger-containing domain # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF484-204.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF484-204.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF484-204.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF484-204.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF484-204.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:07:16 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZNF485-201 - 441 1.7e-71 233.7 95.0 1 12 0.00091 0.58 10.7 2.6 12 26 127 141 124 141 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF485-201 - 441 1.7e-71 233.7 95.0 2 12 7.3e-08 4.7e-05 23.6 1.5 4 24 147 167 144 168 0.90 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF485-201 - 441 1.7e-71 233.7 95.0 3 12 3.7e-05 0.024 15.1 1.6 2 23 173 194 172 197 0.88 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF485-201 - 441 1.7e-71 233.7 95.0 4 12 1.9e-07 0.00012 22.3 3.2 4 25 203 224 201 225 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF485-201 - 441 1.7e-71 233.7 95.0 5 12 2e-10 1.3e-07 31.8 0.1 4 25 231 252 229 253 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF485-201 - 441 1.7e-71 233.7 95.0 6 12 2.6e-10 1.7e-07 31.4 0.7 1 24 256 279 256 280 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF485-201 - 441 1.7e-71 233.7 95.0 7 12 4.3e-10 2.7e-07 30.7 1.0 5 25 288 308 286 309 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF485-201 - 441 1.7e-71 233.7 95.0 8 12 2.1e-10 1.3e-07 31.7 2.6 3 25 314 336 313 337 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF485-201 - 441 1.7e-71 233.7 95.0 9 12 3e-08 1.9e-05 24.9 1.1 5 26 344 365 340 365 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF485-201 - 441 1.7e-71 233.7 95.0 10 12 7.5e-10 4.8e-07 29.9 4.4 3 26 370 393 369 393 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF485-201 - 441 1.7e-71 233.7 95.0 11 12 4.3e-11 2.7e-08 33.8 0.4 1 24 396 419 396 421 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF485-201 - 441 1.7e-71 233.7 95.0 12 12 0.034 22 5.7 0.4 1 18 424 441 424 441 0.89 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZNF485-201 - 441 3.2e-55 181.6 89.7 1 11 9.7e-09 6.2e-06 26.4 2.3 1 23 130 152 130 152 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF485-201 - 441 3.2e-55 181.6 89.7 2 11 1.1e-05 0.0072 16.7 2.7 1 23 158 180 158 180 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF485-201 - 441 3.2e-55 181.6 89.7 3 11 0.00089 0.57 10.7 2.7 1 23 186 208 186 208 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF485-201 - 441 3.2e-55 181.6 89.7 4 11 0.00014 0.09 13.3 1.8 1 23 214 236 214 236 0.94 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF485-201 - 441 3.2e-55 181.6 89.7 5 11 8.1e-09 5.2e-06 26.6 0.1 1 23 242 264 242 264 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF485-201 - 441 3.2e-55 181.6 89.7 6 11 8.6e-07 0.00055 20.2 0.6 1 23 270 292 270 292 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF485-201 - 441 3.2e-55 181.6 89.7 7 11 3.5e-09 2.2e-06 27.8 1.0 1 23 298 320 298 320 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF485-201 - 441 3.2e-55 181.6 89.7 8 11 2.7e-06 0.0017 18.7 4.4 1 23 326 348 326 348 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF485-201 - 441 3.2e-55 181.6 89.7 9 11 1.4e-08 9.2e-06 25.8 0.7 1 23 354 376 354 376 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF485-201 - 441 3.2e-55 181.6 89.7 10 11 2.4e-07 0.00016 22.0 3.8 1 23 382 404 382 404 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF485-201 - 441 3.2e-55 181.6 89.7 11 11 5.1e-09 3.3e-06 27.3 0.6 1 23 410 432 410 432 0.98 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZNF485-201 - 441 2.9e-31 105.4 82.4 1 11 7.6e-06 0.0049 17.6 1.7 1 23 130 152 130 153 0.97 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF485-201 - 441 2.9e-31 105.4 82.4 2 11 7.7e-05 0.049 14.5 1.8 1 23 158 180 158 181 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF485-201 - 441 2.9e-31 105.4 82.4 3 11 0.018 11 7.1 1.9 1 23 186 208 186 209 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF485-201 - 441 2.9e-31 105.4 82.4 4 11 0.00023 0.15 13.0 1.2 1 23 214 236 214 237 0.85 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF485-201 - 441 2.9e-31 105.4 82.4 5 11 1.9e-05 0.012 16.4 0.1 1 23 242 264 242 265 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF485-201 - 441 2.9e-31 105.4 82.4 6 11 8.1e-05 0.052 14.4 0.5 1 23 270 292 270 293 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF485-201 - 441 2.9e-31 105.4 82.4 7 11 2.2e-05 0.014 16.2 0.7 1 23 298 320 298 321 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF485-201 - 441 2.9e-31 105.4 82.4 8 11 9.1e-05 0.058 14.3 3.8 1 23 326 348 326 349 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF485-201 - 441 2.9e-31 105.4 82.4 9 11 5.6e-05 0.036 14.9 0.4 1 23 354 376 354 377 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF485-201 - 441 2.9e-31 105.4 82.4 10 11 0.0024 1.6 9.8 3.2 1 23 382 404 382 405 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF485-201 - 441 2.9e-31 105.4 82.4 11 11 3e-06 0.0019 18.9 0.5 1 23 410 432 410 433 0.96 C2H2-type zinc finger KRAB PF01352.27 42 ZNF485-201 - 441 9.1e-23 79.6 0.0 1 1 2.4e-25 1.5e-22 78.9 0.0 1 42 10 51 10 51 0.98 KRAB box Zn-ribbon_8 PF09723.10 40 ZNF485-201 - 441 1.2e-15 57.3 50.3 1 9 7.4e-06 0.0048 17.0 2.4 6 33 130 164 129 167 0.87 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF485-201 - 441 1.2e-15 57.3 50.3 2 9 0.00047 0.3 11.2 1.7 6 38 186 225 185 226 0.82 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF485-201 - 441 1.2e-15 57.3 50.3 3 9 0.00028 0.18 11.9 2.6 6 35 242 278 241 280 0.80 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF485-201 - 441 1.2e-15 57.3 50.3 4 9 4.5e-06 0.0029 17.7 2.4 6 38 270 309 268 311 0.93 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF485-201 - 441 1.2e-15 57.3 50.3 5 9 4e-05 0.026 14.6 4.0 6 35 298 334 297 337 0.92 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF485-201 - 441 1.2e-15 57.3 50.3 6 9 0.0006 0.39 10.9 4.5 6 37 326 364 325 365 0.83 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF485-201 - 441 1.2e-15 57.3 50.3 7 9 1.4e-05 0.009 16.1 3.0 6 36 354 391 351 394 0.90 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF485-201 - 441 1.2e-15 57.3 50.3 8 9 3.6e-05 0.023 14.8 3.6 6 38 382 421 381 422 0.90 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF485-201 - 441 1.2e-15 57.3 50.3 9 9 0.0074 4.7 7.4 0.3 6 16 410 420 409 432 0.81 Zinc ribbon domain XPA_N PF01286.18 32 ZNF485-201 - 441 2.1e-12 46.9 38.8 1 11 0.039 25 5.0 0.2 3 12 131 140 129 143 0.89 XPA protein N-terminal XPA_N PF01286.18 32 ZNF485-201 - 441 2.1e-12 46.9 38.8 2 11 0.0036 2.3 8.3 0.0 3 14 159 170 157 180 0.80 XPA protein N-terminal XPA_N PF01286.18 32 ZNF485-201 - 441 2.1e-12 46.9 38.8 3 11 0.3 1.9e+02 2.2 0.2 3 9 187 193 185 197 0.83 XPA protein N-terminal XPA_N PF01286.18 32 ZNF485-201 - 441 2.1e-12 46.9 38.8 4 11 0.0029 1.9 8.6 0.1 3 12 215 224 213 232 0.73 XPA protein N-terminal XPA_N PF01286.18 32 ZNF485-201 - 441 2.1e-12 46.9 38.8 5 11 0.025 16 5.6 0.1 3 12 243 252 241 254 0.89 XPA protein N-terminal XPA_N PF01286.18 32 ZNF485-201 - 441 2.1e-12 46.9 38.8 6 11 0.066 42 4.3 0.2 3 13 271 281 269 283 0.91 XPA protein N-terminal XPA_N PF01286.18 32 ZNF485-201 - 441 2.1e-12 46.9 38.8 7 11 0.0074 4.8 7.3 0.1 3 14 299 310 297 313 0.90 XPA protein N-terminal XPA_N PF01286.18 32 ZNF485-201 - 441 2.1e-12 46.9 38.8 8 11 0.056 36 4.5 0.1 3 14 327 338 325 339 0.86 XPA protein N-terminal XPA_N PF01286.18 32 ZNF485-201 - 441 2.1e-12 46.9 38.8 9 11 0.0095 6.1 7.0 0.1 3 14 355 366 353 370 0.90 XPA protein N-terminal XPA_N PF01286.18 32 ZNF485-201 - 441 2.1e-12 46.9 38.8 10 11 0.011 7.2 6.8 0.1 3 14 383 394 381 397 0.90 XPA protein N-terminal XPA_N PF01286.18 32 ZNF485-201 - 441 2.1e-12 46.9 38.8 11 11 0.0035 2.2 8.4 0.1 3 14 411 422 409 426 0.90 XPA protein N-terminal zf_UBZ PF18439.1 32 ZNF485-201 - 441 7.5e-10 38.2 41.5 1 11 0.0018 1.2 8.8 0.1 2 20 129 148 128 149 0.82 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF485-201 - 441 7.5e-10 38.2 41.5 2 11 0.4 2.5e+02 1.3 0.1 3 12 158 167 156 177 0.76 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF485-201 - 441 7.5e-10 38.2 41.5 3 11 0.17 1.1e+02 2.6 0.2 3 15 186 198 184 205 0.78 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF485-201 - 441 7.5e-10 38.2 41.5 4 11 0.12 79 3.0 0.2 4 20 215 232 212 233 0.80 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF485-201 - 441 7.5e-10 38.2 41.5 5 11 0.0095 6.1 6.5 0.0 3 20 242 260 240 261 0.82 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF485-201 - 441 7.5e-10 38.2 41.5 6 11 0.011 7.1 6.3 0.1 3 21 270 289 268 289 0.93 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF485-201 - 441 7.5e-10 38.2 41.5 7 11 0.0084 5.4 6.7 0.1 3 21 298 317 296 317 0.85 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF485-201 - 441 7.5e-10 38.2 41.5 8 11 0.013 8 6.1 0.1 3 12 326 335 324 345 0.81 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF485-201 - 441 7.5e-10 38.2 41.5 9 11 0.029 19 5.0 0.1 3 15 354 366 352 373 0.77 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF485-201 - 441 7.5e-10 38.2 41.5 10 11 0.0079 5.1 6.8 0.4 3 21 382 401 380 401 0.89 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF485-201 - 441 7.5e-10 38.2 41.5 11 11 0.0013 0.82 9.3 0.1 3 20 410 428 408 429 0.88 Ubiquitin-Binding Zinc Finger zf-C2H2_11 PF16622.5 29 ZNF485-201 - 441 1.1e-09 37.9 42.7 1 11 0.18 1.2e+02 2.6 0.1 5 14 130 139 127 148 0.80 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF485-201 - 441 1.1e-09 37.9 42.7 2 11 0.0044 2.8 7.8 0.3 5 23 158 176 155 180 0.83 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF485-201 - 441 1.1e-09 37.9 42.7 3 11 0.29 1.8e+02 2.0 0.1 5 11 186 192 184 204 0.89 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF485-201 - 441 1.1e-09 37.9 42.7 4 11 0.054 34 4.3 0.1 5 14 214 223 211 235 0.81 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF485-201 - 441 1.1e-09 37.9 42.7 5 11 7.2e-05 0.046 13.5 0.0 5 26 242 263 240 264 0.94 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF485-201 - 441 1.1e-09 37.9 42.7 6 11 0.083 53 3.7 0.2 5 14 270 279 267 280 0.89 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF485-201 - 441 1.1e-09 37.9 42.7 7 11 0.026 17 5.3 0.2 5 15 298 308 295 320 0.75 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF485-201 - 441 1.1e-09 37.9 42.7 8 11 0.73 4.7e+02 0.7 0.4 6 14 327 335 324 342 0.74 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF485-201 - 441 1.1e-09 37.9 42.7 9 11 0.00016 0.1 12.4 0.2 5 26 354 375 351 376 0.91 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF485-201 - 441 1.1e-09 37.9 42.7 10 11 0.86 5.5e+02 0.4 0.2 6 14 383 391 380 402 0.81 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF485-201 - 441 1.1e-09 37.9 42.7 11 11 0.0029 1.9 8.3 0.0 5 26 410 431 407 434 0.90 zinc-finger C2H2-type zf-C2H2_6 PF13912.6 27 ZNF485-201 - 441 2.5e-09 36.9 81.0 1 11 2e-05 0.013 15.5 2.5 2 25 130 153 129 155 0.91 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF485-201 - 441 2.5e-09 36.9 81.0 2 11 0.066 43 4.3 0.2 2 8 158 164 158 168 0.86 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF485-201 - 441 2.5e-09 36.9 81.0 3 11 1.2 7.9e+02 0.2 0.4 2 9 186 193 186 196 0.92 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF485-201 - 441 2.5e-09 36.9 81.0 4 11 0.0055 3.5 7.7 0.7 2 12 214 224 214 226 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF485-201 - 441 2.5e-09 36.9 81.0 5 11 0.017 11 6.2 0.2 2 22 242 262 242 267 0.82 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF485-201 - 441 2.5e-09 36.9 81.0 6 11 0.072 46 4.2 0.7 2 12 270 280 270 280 0.92 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF485-201 - 441 2.5e-09 36.9 81.0 7 11 0.00069 0.44 10.6 0.7 2 24 298 320 298 323 0.85 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF485-201 - 441 2.5e-09 36.9 81.0 8 11 0.0043 2.8 8.1 6.6 2 24 326 348 326 350 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF485-201 - 441 2.5e-09 36.9 81.0 9 11 0.063 40 4.4 0.6 2 24 354 376 354 379 0.88 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF485-201 - 441 2.5e-09 36.9 81.0 10 11 0.053 34 4.6 1.9 2 12 382 392 382 405 0.77 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF485-201 - 441 2.5e-09 36.9 81.0 11 11 1.5e-06 0.00096 19.1 1.4 2 26 410 434 410 435 0.94 C2H2-type zinc finger zf-C2H2_jaz PF12171.8 27 ZNF485-201 - 441 1.3e-08 34.9 56.8 1 11 0.07 45 4.5 8.1 2 27 130 159 129 159 0.89 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF485-201 - 441 1.3e-08 34.9 56.8 2 11 0.026 16 5.9 0.3 2 20 158 176 157 178 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF485-201 - 441 1.3e-08 34.9 56.8 3 11 0.00018 0.12 12.8 0.5 2 22 186 206 185 206 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF485-201 - 441 1.3e-08 34.9 56.8 4 11 0.00055 0.35 11.2 0.1 2 22 214 234 213 234 0.91 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF485-201 - 441 1.3e-08 34.9 56.8 5 11 0.12 80 3.7 0.0 2 22 242 262 241 262 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF485-201 - 441 1.3e-08 34.9 56.8 6 11 0.41 2.7e+02 2.0 0.1 2 22 270 290 269 290 0.91 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF485-201 - 441 1.3e-08 34.9 56.8 7 11 0.014 9.2 6.7 0.1 4 22 300 318 297 318 0.91 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF485-201 - 441 1.3e-08 34.9 56.8 8 11 2.7 1.7e+03 -0.6 3.1 7 24 331 348 326 349 0.88 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF485-201 - 441 1.3e-08 34.9 56.8 9 11 0.094 60 4.1 0.0 4 22 356 374 353 374 0.89 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF485-201 - 441 1.3e-08 34.9 56.8 10 11 0.78 5e+02 1.2 0.3 4 22 384 402 381 402 0.88 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF485-201 - 441 1.3e-08 34.9 56.8 11 11 0.00028 0.18 12.1 0.1 2 22 410 430 409 430 0.94 Zinc-finger double-stranded RNA-binding zf-trcl PF13451.6 48 ZNF485-201 - 441 1.5e-07 31.2 41.8 1 10 0.015 9.8 6.2 4.4 2 39 127 163 126 170 0.77 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF485-201 - 441 1.5e-07 31.2 41.8 2 10 0.039 25 4.9 2.8 3 41 156 193 154 200 0.78 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF485-201 - 441 1.5e-07 31.2 41.8 3 10 0.19 1.2e+02 2.6 0.3 3 14 212 223 204 227 0.68 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF485-201 - 441 1.5e-07 31.2 41.8 4 10 0.01 6.6 6.7 0.1 3 15 240 252 239 256 0.86 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF485-201 - 441 1.5e-07 31.2 41.8 5 10 0.063 41 4.2 0.2 3 14 268 279 266 280 0.88 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF485-201 - 441 1.5e-07 31.2 41.8 6 10 0.078 50 3.9 0.1 3 14 296 307 294 310 0.87 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF485-201 - 441 1.5e-07 31.2 41.8 7 10 0.026 17 5.4 0.0 3 18 324 339 322 346 0.85 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF485-201 - 441 1.5e-07 31.2 41.8 8 10 0.0031 2 8.4 0.1 3 15 352 364 350 367 0.89 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF485-201 - 441 1.5e-07 31.2 41.8 9 10 0.024 15 5.6 0.0 3 16 380 393 378 400 0.83 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF485-201 - 441 1.5e-07 31.2 41.8 10 10 0.055 35 4.4 0.1 3 14 408 419 406 422 0.88 Probable zinc-ribbon domain zinc_ribbon_15 PF17032.5 86 ZNF485-201 - 441 2.1e-07 31.6 47.8 1 10 0.0015 0.93 10.3 4.3 35 75 127 167 118 172 0.87 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF485-201 - 441 2.1e-07 31.6 47.8 2 10 0.0089 5.7 7.8 1.6 30 78 178 226 172 229 0.85 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF485-201 - 441 2.1e-07 31.6 47.8 3 10 0.013 8.3 7.2 5.3 24 78 200 254 186 257 0.86 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF485-201 - 441 2.1e-07 31.6 47.8 4 10 0.00063 0.4 11.4 1.1 31 78 235 282 228 285 0.84 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF485-201 - 441 2.1e-07 31.6 47.8 5 10 0.00043 0.28 12.0 1.9 33 78 265 310 260 316 0.86 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF485-201 - 441 2.1e-07 31.6 47.8 6 10 0.00017 0.11 13.3 2.0 30 81 290 341 284 344 0.87 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF485-201 - 441 2.1e-07 31.6 47.8 7 10 0.00026 0.17 12.7 1.6 30 78 318 366 310 372 0.86 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF485-201 - 441 2.1e-07 31.6 47.8 8 10 0.00085 0.55 11.0 1.3 33 77 349 393 341 397 0.84 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF485-201 - 441 2.1e-07 31.6 47.8 9 10 0.00062 0.39 11.5 0.9 32 77 376 421 371 425 0.85 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF485-201 - 441 2.1e-07 31.6 47.8 10 10 0.038 24 5.8 0.6 32 68 404 440 397 441 0.75 zinc-ribbon family # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF485-201.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF485-201.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF485-201.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF485-201.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF485-201.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:07:17 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZNF485-202 - 441 1.7e-71 233.7 95.0 1 12 0.00091 0.58 10.7 2.6 12 26 127 141 124 141 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF485-202 - 441 1.7e-71 233.7 95.0 2 12 7.3e-08 4.7e-05 23.6 1.5 4 24 147 167 144 168 0.90 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF485-202 - 441 1.7e-71 233.7 95.0 3 12 3.7e-05 0.024 15.1 1.6 2 23 173 194 172 197 0.88 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF485-202 - 441 1.7e-71 233.7 95.0 4 12 1.9e-07 0.00012 22.3 3.2 4 25 203 224 201 225 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF485-202 - 441 1.7e-71 233.7 95.0 5 12 2e-10 1.3e-07 31.8 0.1 4 25 231 252 229 253 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF485-202 - 441 1.7e-71 233.7 95.0 6 12 2.6e-10 1.7e-07 31.4 0.7 1 24 256 279 256 280 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF485-202 - 441 1.7e-71 233.7 95.0 7 12 4.3e-10 2.7e-07 30.7 1.0 5 25 288 308 286 309 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF485-202 - 441 1.7e-71 233.7 95.0 8 12 2.1e-10 1.3e-07 31.7 2.6 3 25 314 336 313 337 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF485-202 - 441 1.7e-71 233.7 95.0 9 12 3e-08 1.9e-05 24.9 1.1 5 26 344 365 340 365 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF485-202 - 441 1.7e-71 233.7 95.0 10 12 7.5e-10 4.8e-07 29.9 4.4 3 26 370 393 369 393 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF485-202 - 441 1.7e-71 233.7 95.0 11 12 4.3e-11 2.7e-08 33.8 0.4 1 24 396 419 396 421 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF485-202 - 441 1.7e-71 233.7 95.0 12 12 0.034 22 5.7 0.4 1 18 424 441 424 441 0.89 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZNF485-202 - 441 3.2e-55 181.6 89.7 1 11 9.7e-09 6.2e-06 26.4 2.3 1 23 130 152 130 152 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF485-202 - 441 3.2e-55 181.6 89.7 2 11 1.1e-05 0.0072 16.7 2.7 1 23 158 180 158 180 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF485-202 - 441 3.2e-55 181.6 89.7 3 11 0.00089 0.57 10.7 2.7 1 23 186 208 186 208 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF485-202 - 441 3.2e-55 181.6 89.7 4 11 0.00014 0.09 13.3 1.8 1 23 214 236 214 236 0.94 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF485-202 - 441 3.2e-55 181.6 89.7 5 11 8.1e-09 5.2e-06 26.6 0.1 1 23 242 264 242 264 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF485-202 - 441 3.2e-55 181.6 89.7 6 11 8.6e-07 0.00055 20.2 0.6 1 23 270 292 270 292 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF485-202 - 441 3.2e-55 181.6 89.7 7 11 3.5e-09 2.2e-06 27.8 1.0 1 23 298 320 298 320 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF485-202 - 441 3.2e-55 181.6 89.7 8 11 2.7e-06 0.0017 18.7 4.4 1 23 326 348 326 348 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF485-202 - 441 3.2e-55 181.6 89.7 9 11 1.4e-08 9.2e-06 25.8 0.7 1 23 354 376 354 376 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF485-202 - 441 3.2e-55 181.6 89.7 10 11 2.4e-07 0.00016 22.0 3.8 1 23 382 404 382 404 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF485-202 - 441 3.2e-55 181.6 89.7 11 11 5.1e-09 3.3e-06 27.3 0.6 1 23 410 432 410 432 0.98 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZNF485-202 - 441 2.9e-31 105.4 82.4 1 11 7.6e-06 0.0049 17.6 1.7 1 23 130 152 130 153 0.97 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF485-202 - 441 2.9e-31 105.4 82.4 2 11 7.7e-05 0.049 14.5 1.8 1 23 158 180 158 181 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF485-202 - 441 2.9e-31 105.4 82.4 3 11 0.018 11 7.1 1.9 1 23 186 208 186 209 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF485-202 - 441 2.9e-31 105.4 82.4 4 11 0.00023 0.15 13.0 1.2 1 23 214 236 214 237 0.85 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF485-202 - 441 2.9e-31 105.4 82.4 5 11 1.9e-05 0.012 16.4 0.1 1 23 242 264 242 265 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF485-202 - 441 2.9e-31 105.4 82.4 6 11 8.1e-05 0.052 14.4 0.5 1 23 270 292 270 293 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF485-202 - 441 2.9e-31 105.4 82.4 7 11 2.2e-05 0.014 16.2 0.7 1 23 298 320 298 321 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF485-202 - 441 2.9e-31 105.4 82.4 8 11 9.1e-05 0.058 14.3 3.8 1 23 326 348 326 349 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF485-202 - 441 2.9e-31 105.4 82.4 9 11 5.6e-05 0.036 14.9 0.4 1 23 354 376 354 377 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF485-202 - 441 2.9e-31 105.4 82.4 10 11 0.0024 1.6 9.8 3.2 1 23 382 404 382 405 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF485-202 - 441 2.9e-31 105.4 82.4 11 11 3e-06 0.0019 18.9 0.5 1 23 410 432 410 433 0.96 C2H2-type zinc finger KRAB PF01352.27 42 ZNF485-202 - 441 9.1e-23 79.6 0.0 1 1 2.4e-25 1.5e-22 78.9 0.0 1 42 10 51 10 51 0.98 KRAB box Zn-ribbon_8 PF09723.10 40 ZNF485-202 - 441 1.2e-15 57.3 50.3 1 9 7.4e-06 0.0048 17.0 2.4 6 33 130 164 129 167 0.87 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF485-202 - 441 1.2e-15 57.3 50.3 2 9 0.00047 0.3 11.2 1.7 6 38 186 225 185 226 0.82 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF485-202 - 441 1.2e-15 57.3 50.3 3 9 0.00028 0.18 11.9 2.6 6 35 242 278 241 280 0.80 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF485-202 - 441 1.2e-15 57.3 50.3 4 9 4.5e-06 0.0029 17.7 2.4 6 38 270 309 268 311 0.93 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF485-202 - 441 1.2e-15 57.3 50.3 5 9 4e-05 0.026 14.6 4.0 6 35 298 334 297 337 0.92 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF485-202 - 441 1.2e-15 57.3 50.3 6 9 0.0006 0.39 10.9 4.5 6 37 326 364 325 365 0.83 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF485-202 - 441 1.2e-15 57.3 50.3 7 9 1.4e-05 0.009 16.1 3.0 6 36 354 391 351 394 0.90 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF485-202 - 441 1.2e-15 57.3 50.3 8 9 3.6e-05 0.023 14.8 3.6 6 38 382 421 381 422 0.90 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF485-202 - 441 1.2e-15 57.3 50.3 9 9 0.0074 4.7 7.4 0.3 6 16 410 420 409 432 0.81 Zinc ribbon domain XPA_N PF01286.18 32 ZNF485-202 - 441 2.1e-12 46.9 38.8 1 11 0.039 25 5.0 0.2 3 12 131 140 129 143 0.89 XPA protein N-terminal XPA_N PF01286.18 32 ZNF485-202 - 441 2.1e-12 46.9 38.8 2 11 0.0036 2.3 8.3 0.0 3 14 159 170 157 180 0.80 XPA protein N-terminal XPA_N PF01286.18 32 ZNF485-202 - 441 2.1e-12 46.9 38.8 3 11 0.3 1.9e+02 2.2 0.2 3 9 187 193 185 197 0.83 XPA protein N-terminal XPA_N PF01286.18 32 ZNF485-202 - 441 2.1e-12 46.9 38.8 4 11 0.0029 1.9 8.6 0.1 3 12 215 224 213 232 0.73 XPA protein N-terminal XPA_N PF01286.18 32 ZNF485-202 - 441 2.1e-12 46.9 38.8 5 11 0.025 16 5.6 0.1 3 12 243 252 241 254 0.89 XPA protein N-terminal XPA_N PF01286.18 32 ZNF485-202 - 441 2.1e-12 46.9 38.8 6 11 0.066 42 4.3 0.2 3 13 271 281 269 283 0.91 XPA protein N-terminal XPA_N PF01286.18 32 ZNF485-202 - 441 2.1e-12 46.9 38.8 7 11 0.0074 4.8 7.3 0.1 3 14 299 310 297 313 0.90 XPA protein N-terminal XPA_N PF01286.18 32 ZNF485-202 - 441 2.1e-12 46.9 38.8 8 11 0.056 36 4.5 0.1 3 14 327 338 325 339 0.86 XPA protein N-terminal XPA_N PF01286.18 32 ZNF485-202 - 441 2.1e-12 46.9 38.8 9 11 0.0095 6.1 7.0 0.1 3 14 355 366 353 370 0.90 XPA protein N-terminal XPA_N PF01286.18 32 ZNF485-202 - 441 2.1e-12 46.9 38.8 10 11 0.011 7.2 6.8 0.1 3 14 383 394 381 397 0.90 XPA protein N-terminal XPA_N PF01286.18 32 ZNF485-202 - 441 2.1e-12 46.9 38.8 11 11 0.0035 2.2 8.4 0.1 3 14 411 422 409 426 0.90 XPA protein N-terminal zf_UBZ PF18439.1 32 ZNF485-202 - 441 7.5e-10 38.2 41.5 1 11 0.0018 1.2 8.8 0.1 2 20 129 148 128 149 0.82 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF485-202 - 441 7.5e-10 38.2 41.5 2 11 0.4 2.5e+02 1.3 0.1 3 12 158 167 156 177 0.76 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF485-202 - 441 7.5e-10 38.2 41.5 3 11 0.17 1.1e+02 2.6 0.2 3 15 186 198 184 205 0.78 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF485-202 - 441 7.5e-10 38.2 41.5 4 11 0.12 79 3.0 0.2 4 20 215 232 212 233 0.80 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF485-202 - 441 7.5e-10 38.2 41.5 5 11 0.0095 6.1 6.5 0.0 3 20 242 260 240 261 0.82 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF485-202 - 441 7.5e-10 38.2 41.5 6 11 0.011 7.1 6.3 0.1 3 21 270 289 268 289 0.93 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF485-202 - 441 7.5e-10 38.2 41.5 7 11 0.0084 5.4 6.7 0.1 3 21 298 317 296 317 0.85 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF485-202 - 441 7.5e-10 38.2 41.5 8 11 0.013 8 6.1 0.1 3 12 326 335 324 345 0.81 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF485-202 - 441 7.5e-10 38.2 41.5 9 11 0.029 19 5.0 0.1 3 15 354 366 352 373 0.77 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF485-202 - 441 7.5e-10 38.2 41.5 10 11 0.0079 5.1 6.8 0.4 3 21 382 401 380 401 0.89 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF485-202 - 441 7.5e-10 38.2 41.5 11 11 0.0013 0.82 9.3 0.1 3 20 410 428 408 429 0.88 Ubiquitin-Binding Zinc Finger zf-C2H2_11 PF16622.5 29 ZNF485-202 - 441 1.1e-09 37.9 42.7 1 11 0.18 1.2e+02 2.6 0.1 5 14 130 139 127 148 0.80 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF485-202 - 441 1.1e-09 37.9 42.7 2 11 0.0044 2.8 7.8 0.3 5 23 158 176 155 180 0.83 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF485-202 - 441 1.1e-09 37.9 42.7 3 11 0.29 1.8e+02 2.0 0.1 5 11 186 192 184 204 0.89 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF485-202 - 441 1.1e-09 37.9 42.7 4 11 0.054 34 4.3 0.1 5 14 214 223 211 235 0.81 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF485-202 - 441 1.1e-09 37.9 42.7 5 11 7.2e-05 0.046 13.5 0.0 5 26 242 263 240 264 0.94 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF485-202 - 441 1.1e-09 37.9 42.7 6 11 0.083 53 3.7 0.2 5 14 270 279 267 280 0.89 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF485-202 - 441 1.1e-09 37.9 42.7 7 11 0.026 17 5.3 0.2 5 15 298 308 295 320 0.75 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF485-202 - 441 1.1e-09 37.9 42.7 8 11 0.73 4.7e+02 0.7 0.4 6 14 327 335 324 342 0.74 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF485-202 - 441 1.1e-09 37.9 42.7 9 11 0.00016 0.1 12.4 0.2 5 26 354 375 351 376 0.91 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF485-202 - 441 1.1e-09 37.9 42.7 10 11 0.86 5.5e+02 0.4 0.2 6 14 383 391 380 402 0.81 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF485-202 - 441 1.1e-09 37.9 42.7 11 11 0.0029 1.9 8.3 0.0 5 26 410 431 407 434 0.90 zinc-finger C2H2-type zf-C2H2_6 PF13912.6 27 ZNF485-202 - 441 2.5e-09 36.9 81.0 1 11 2e-05 0.013 15.5 2.5 2 25 130 153 129 155 0.91 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF485-202 - 441 2.5e-09 36.9 81.0 2 11 0.066 43 4.3 0.2 2 8 158 164 158 168 0.86 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF485-202 - 441 2.5e-09 36.9 81.0 3 11 1.2 7.9e+02 0.2 0.4 2 9 186 193 186 196 0.92 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF485-202 - 441 2.5e-09 36.9 81.0 4 11 0.0055 3.5 7.7 0.7 2 12 214 224 214 226 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF485-202 - 441 2.5e-09 36.9 81.0 5 11 0.017 11 6.2 0.2 2 22 242 262 242 267 0.82 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF485-202 - 441 2.5e-09 36.9 81.0 6 11 0.072 46 4.2 0.7 2 12 270 280 270 280 0.92 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF485-202 - 441 2.5e-09 36.9 81.0 7 11 0.00069 0.44 10.6 0.7 2 24 298 320 298 323 0.85 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF485-202 - 441 2.5e-09 36.9 81.0 8 11 0.0043 2.8 8.1 6.6 2 24 326 348 326 350 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF485-202 - 441 2.5e-09 36.9 81.0 9 11 0.063 40 4.4 0.6 2 24 354 376 354 379 0.88 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF485-202 - 441 2.5e-09 36.9 81.0 10 11 0.053 34 4.6 1.9 2 12 382 392 382 405 0.77 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF485-202 - 441 2.5e-09 36.9 81.0 11 11 1.5e-06 0.00096 19.1 1.4 2 26 410 434 410 435 0.94 C2H2-type zinc finger zf-C2H2_jaz PF12171.8 27 ZNF485-202 - 441 1.3e-08 34.9 56.8 1 11 0.07 45 4.5 8.1 2 27 130 159 129 159 0.89 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF485-202 - 441 1.3e-08 34.9 56.8 2 11 0.026 16 5.9 0.3 2 20 158 176 157 178 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF485-202 - 441 1.3e-08 34.9 56.8 3 11 0.00018 0.12 12.8 0.5 2 22 186 206 185 206 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF485-202 - 441 1.3e-08 34.9 56.8 4 11 0.00055 0.35 11.2 0.1 2 22 214 234 213 234 0.91 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF485-202 - 441 1.3e-08 34.9 56.8 5 11 0.12 80 3.7 0.0 2 22 242 262 241 262 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF485-202 - 441 1.3e-08 34.9 56.8 6 11 0.41 2.7e+02 2.0 0.1 2 22 270 290 269 290 0.91 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF485-202 - 441 1.3e-08 34.9 56.8 7 11 0.014 9.2 6.7 0.1 4 22 300 318 297 318 0.91 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF485-202 - 441 1.3e-08 34.9 56.8 8 11 2.7 1.7e+03 -0.6 3.1 7 24 331 348 326 349 0.88 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF485-202 - 441 1.3e-08 34.9 56.8 9 11 0.094 60 4.1 0.0 4 22 356 374 353 374 0.89 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF485-202 - 441 1.3e-08 34.9 56.8 10 11 0.78 5e+02 1.2 0.3 4 22 384 402 381 402 0.88 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF485-202 - 441 1.3e-08 34.9 56.8 11 11 0.00028 0.18 12.1 0.1 2 22 410 430 409 430 0.94 Zinc-finger double-stranded RNA-binding zf-trcl PF13451.6 48 ZNF485-202 - 441 1.5e-07 31.2 41.8 1 10 0.015 9.8 6.2 4.4 2 39 127 163 126 170 0.77 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF485-202 - 441 1.5e-07 31.2 41.8 2 10 0.039 25 4.9 2.8 3 41 156 193 154 200 0.78 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF485-202 - 441 1.5e-07 31.2 41.8 3 10 0.19 1.2e+02 2.6 0.3 3 14 212 223 204 227 0.68 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF485-202 - 441 1.5e-07 31.2 41.8 4 10 0.01 6.6 6.7 0.1 3 15 240 252 239 256 0.86 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF485-202 - 441 1.5e-07 31.2 41.8 5 10 0.063 41 4.2 0.2 3 14 268 279 266 280 0.88 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF485-202 - 441 1.5e-07 31.2 41.8 6 10 0.078 50 3.9 0.1 3 14 296 307 294 310 0.87 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF485-202 - 441 1.5e-07 31.2 41.8 7 10 0.026 17 5.4 0.0 3 18 324 339 322 346 0.85 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF485-202 - 441 1.5e-07 31.2 41.8 8 10 0.0031 2 8.4 0.1 3 15 352 364 350 367 0.89 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF485-202 - 441 1.5e-07 31.2 41.8 9 10 0.024 15 5.6 0.0 3 16 380 393 378 400 0.83 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF485-202 - 441 1.5e-07 31.2 41.8 10 10 0.055 35 4.4 0.1 3 14 408 419 406 422 0.88 Probable zinc-ribbon domain zinc_ribbon_15 PF17032.5 86 ZNF485-202 - 441 2.1e-07 31.6 47.8 1 10 0.0015 0.93 10.3 4.3 35 75 127 167 118 172 0.87 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF485-202 - 441 2.1e-07 31.6 47.8 2 10 0.0089 5.7 7.8 1.6 30 78 178 226 172 229 0.85 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF485-202 - 441 2.1e-07 31.6 47.8 3 10 0.013 8.3 7.2 5.3 24 78 200 254 186 257 0.86 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF485-202 - 441 2.1e-07 31.6 47.8 4 10 0.00063 0.4 11.4 1.1 31 78 235 282 228 285 0.84 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF485-202 - 441 2.1e-07 31.6 47.8 5 10 0.00043 0.28 12.0 1.9 33 78 265 310 260 316 0.86 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF485-202 - 441 2.1e-07 31.6 47.8 6 10 0.00017 0.11 13.3 2.0 30 81 290 341 284 344 0.87 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF485-202 - 441 2.1e-07 31.6 47.8 7 10 0.00026 0.17 12.7 1.6 30 78 318 366 310 372 0.86 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF485-202 - 441 2.1e-07 31.6 47.8 8 10 0.00085 0.55 11.0 1.3 33 77 349 393 341 397 0.84 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF485-202 - 441 2.1e-07 31.6 47.8 9 10 0.00062 0.39 11.5 0.9 32 77 376 421 371 425 0.85 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF485-202 - 441 2.1e-07 31.6 47.8 10 10 0.038 24 5.8 0.6 32 68 404 440 397 441 0.75 zinc-ribbon family # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF485-202.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF485-202.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF485-202.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF485-202.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF485-202.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:07:17 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF485-203.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF485-203.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF485-203.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF485-203.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF485-203.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:07:18 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF485-204.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF485-204.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF485-204.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF485-204.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF485-204.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:07:18 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZNF486-201 - 463 2.3e-72 236.4 93.0 1 12 4.3 2.9e+03 -1.0 0.1 10 19 149 158 147 164 0.73 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF486-201 - 463 2.3e-72 236.4 93.0 2 12 3.8e-05 0.025 15.0 0.2 3 25 170 192 168 193 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF486-201 - 463 2.3e-72 236.4 93.0 3 12 3.6e-07 0.00024 21.4 2.3 5 25 200 220 196 221 0.87 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF486-201 - 463 2.3e-72 236.4 93.0 4 12 6.3e-09 4.2e-06 26.9 5.0 1 26 224 249 224 249 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF486-201 - 463 2.3e-72 236.4 93.0 5 12 2.9e-07 0.00019 21.7 1.1 2 24 253 275 252 275 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF486-201 - 463 2.3e-72 236.4 93.0 6 12 7.7e-10 5.1e-07 29.8 1.9 2 26 281 305 280 305 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF486-201 - 463 2.3e-72 236.4 93.0 7 12 1.2e-11 7.6e-09 35.6 0.6 2 25 309 332 308 333 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF486-201 - 463 2.3e-72 236.4 93.0 8 12 4e-12 2.7e-09 37.0 0.9 2 26 337 361 336 361 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF486-201 - 463 2.3e-72 236.4 93.0 9 12 1.1e-10 7.3e-08 32.5 1.5 1 25 364 388 364 388 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF486-201 - 463 2.3e-72 236.4 93.0 10 12 1.7e-10 1.1e-07 31.9 3.6 3 26 394 417 392 417 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF486-201 - 463 2.3e-72 236.4 93.0 11 12 1.6e-10 1.1e-07 32.0 2.2 1 25 420 444 420 444 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF486-201 - 463 2.3e-72 236.4 93.0 12 12 0.0034 2.2 8.8 0.2 1 14 448 461 448 463 0.93 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZNF486-201 - 463 1.1e-43 145.3 81.2 1 10 0.5 3.3e+02 2.0 2.5 6 23 156 176 154 176 0.92 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF486-201 - 463 1.1e-43 145.3 81.2 2 10 8.7e-09 5.8e-06 26.5 2.3 1 23 210 232 210 232 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF486-201 - 463 1.1e-43 145.3 81.2 3 10 5.7e-07 0.00038 20.7 2.6 1 23 238 260 238 260 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF486-201 - 463 1.1e-43 145.3 81.2 4 10 3.2e-06 0.0021 18.4 0.2 1 23 266 288 266 288 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF486-201 - 463 1.1e-43 145.3 81.2 5 10 3.7e-07 0.00024 21.4 1.9 1 23 294 316 294 316 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF486-201 - 463 1.1e-43 145.3 81.2 6 10 7.4e-06 0.0049 17.2 0.3 1 23 322 344 322 344 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF486-201 - 463 1.1e-43 145.3 81.2 7 10 1.8e-08 1.2e-05 25.5 1.5 1 23 350 372 350 372 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF486-201 - 463 1.1e-43 145.3 81.2 8 10 2e-06 0.0013 19.0 1.1 1 23 378 400 378 400 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF486-201 - 463 1.1e-43 145.3 81.2 9 10 3e-08 2e-05 24.8 0.8 1 23 406 428 406 428 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF486-201 - 463 1.1e-43 145.3 81.2 10 10 2.1e-07 0.00014 22.1 0.7 1 23 434 456 434 456 0.99 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZNF486-201 - 463 1.5e-26 90.7 67.7 1 10 6.5 4.3e+03 -0.9 0.6 17 23 170 176 155 178 0.65 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF486-201 - 463 1.5e-26 90.7 67.7 2 10 1e-05 0.0067 17.2 1.6 1 23 210 232 210 233 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF486-201 - 463 1.5e-26 90.7 67.7 3 10 3.1e-05 0.021 15.7 2.3 1 23 238 260 238 261 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF486-201 - 463 1.5e-26 90.7 67.7 4 10 8.5e-05 0.056 14.3 0.1 1 23 266 288 266 289 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF486-201 - 463 1.5e-26 90.7 67.7 5 10 0.00019 0.13 13.2 1.5 1 23 294 316 294 317 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF486-201 - 463 1.5e-26 90.7 67.7 6 10 6e-05 0.04 14.8 0.3 1 23 322 344 322 345 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF486-201 - 463 1.5e-26 90.7 67.7 7 10 0.00012 0.081 13.8 1.1 1 23 350 372 350 373 0.91 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF486-201 - 463 1.5e-26 90.7 67.7 8 10 3.3e-05 0.022 15.6 1.2 1 23 378 400 378 401 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF486-201 - 463 1.5e-26 90.7 67.7 9 10 2.8e-05 0.018 15.8 0.6 1 23 406 428 406 429 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF486-201 - 463 1.5e-26 90.7 67.7 10 10 0.00011 0.072 14.0 0.4 1 23 434 456 434 457 0.90 C2H2-type zinc finger KRAB PF01352.27 42 ZNF486-201 - 463 6.7e-23 80.1 0.6 1 1 2.1e-25 1.4e-22 79.1 0.6 2 42 13 53 12 53 0.97 KRAB box zf-C2H2_6 PF13912.6 27 ZNF486-201 - 463 2.5e-20 72.0 74.8 1 9 1.5e-05 0.01 15.8 2.5 2 25 210 233 210 235 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF486-201 - 463 2.5e-20 72.0 74.8 2 9 3.4e-06 0.0023 17.9 3.2 2 25 238 261 238 263 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF486-201 - 463 2.5e-20 72.0 74.8 3 9 0.0001 0.07 13.2 0.1 2 24 266 288 266 291 0.92 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF486-201 - 463 2.5e-20 72.0 74.8 4 9 0.0012 0.81 9.8 1.2 2 21 294 313 294 318 0.76 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF486-201 - 463 2.5e-20 72.0 74.8 5 9 0.02 14 5.9 0.4 2 11 322 331 322 344 0.89 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF486-201 - 463 2.5e-20 72.0 74.8 6 9 0.00032 0.21 11.6 1.2 2 24 350 372 350 375 0.92 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF486-201 - 463 2.5e-20 72.0 74.8 7 9 0.00078 0.52 10.4 2.1 2 24 378 400 378 403 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF486-201 - 463 2.5e-20 72.0 74.8 8 9 2.9e-06 0.0019 18.1 1.6 2 24 406 428 406 431 0.95 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF486-201 - 463 2.5e-20 72.0 74.8 9 9 1e-05 0.0069 16.4 0.6 2 24 434 456 434 457 0.94 C2H2-type zinc finger XPA_N PF01286.18 32 ZNF486-201 - 463 2.1e-15 56.4 32.4 1 9 0.00063 0.42 10.7 0.1 3 17 211 225 209 230 0.82 XPA protein N-terminal XPA_N PF01286.18 32 ZNF486-201 - 463 2.1e-15 56.4 32.4 2 9 0.02 13 5.9 0.3 3 12 239 248 237 253 0.88 XPA protein N-terminal XPA_N PF01286.18 32 ZNF486-201 - 463 2.1e-15 56.4 32.4 3 9 0.0022 1.5 9.0 0.0 3 13 267 277 265 285 0.82 XPA protein N-terminal XPA_N PF01286.18 32 ZNF486-201 - 463 2.1e-15 56.4 32.4 4 9 0.023 16 5.7 0.5 3 11 295 303 293 305 0.88 XPA protein N-terminal XPA_N PF01286.18 32 ZNF486-201 - 463 2.1e-15 56.4 32.4 5 9 0.0017 1.1 9.3 0.1 3 15 323 335 321 341 0.82 XPA protein N-terminal XPA_N PF01286.18 32 ZNF486-201 - 463 2.1e-15 56.4 32.4 6 9 0.00078 0.52 10.4 0.1 3 14 351 362 349 367 0.88 XPA protein N-terminal XPA_N PF01286.18 32 ZNF486-201 - 463 2.1e-15 56.4 32.4 7 9 0.0023 1.5 8.9 0.1 3 14 379 390 377 391 0.86 XPA protein N-terminal XPA_N PF01286.18 32 ZNF486-201 - 463 2.1e-15 56.4 32.4 8 9 0.014 9.1 6.4 0.1 3 14 407 418 405 422 0.87 XPA protein N-terminal XPA_N PF01286.18 32 ZNF486-201 - 463 2.1e-15 56.4 32.4 9 9 0.006 4 7.6 0.1 3 13 435 445 433 447 0.86 XPA protein N-terminal zf-trcl PF13451.6 48 ZNF486-201 - 463 2.8e-12 46.3 31.1 1 8 0.037 25 4.9 0.1 3 14 208 219 206 222 0.87 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF486-201 - 463 2.8e-12 46.3 31.1 2 8 0.02 14 5.7 0.2 2 17 235 250 234 259 0.85 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF486-201 - 463 2.8e-12 46.3 31.1 3 8 0.0087 5.8 6.9 0.0 3 16 264 277 262 280 0.89 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF486-201 - 463 2.8e-12 46.3 31.1 4 8 0.084 55 3.8 0.1 3 14 292 303 289 308 0.72 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF486-201 - 463 2.8e-12 46.3 31.1 5 8 0.013 8.9 6.3 0.1 3 15 320 332 318 335 0.90 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF486-201 - 463 2.8e-12 46.3 31.1 6 8 0.015 10 6.1 0.1 3 15 348 360 346 363 0.88 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF486-201 - 463 2.8e-12 46.3 31.1 7 8 1.1e-05 0.0073 16.2 3.4 3 42 376 414 374 420 0.84 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF486-201 - 463 2.8e-12 46.3 31.1 8 8 0.00071 0.47 10.4 0.1 3 18 432 447 430 451 0.90 Probable zinc-ribbon domain zf_UBZ PF18439.1 32 ZNF486-201 - 463 3.1e-12 45.9 40.0 1 11 0.8 5.3e+02 0.3 0.0 24 29 89 94 89 95 0.96 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF486-201 - 463 3.1e-12 45.9 40.0 2 11 8.6 5.7e+03 -3.0 0.0 7 13 155 161 155 164 0.82 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF486-201 - 463 3.1e-12 45.9 40.0 3 11 0.0031 2.1 8.0 0.3 3 20 210 228 208 229 0.78 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF486-201 - 463 3.1e-12 45.9 40.0 4 11 0.0034 2.2 7.9 0.2 3 15 238 250 236 257 0.76 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF486-201 - 463 3.1e-12 45.9 40.0 5 11 0.0074 4.9 6.8 0.1 3 12 266 275 264 285 0.80 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF486-201 - 463 3.1e-12 45.9 40.0 6 11 0.008 5.3 6.7 0.4 3 20 294 312 292 313 0.85 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF486-201 - 463 3.1e-12 45.9 40.0 7 11 0.0011 0.7 9.5 0.1 3 16 322 335 320 341 0.81 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF486-201 - 463 3.1e-12 45.9 40.0 8 11 0.0061 4 7.1 0.1 3 14 350 361 348 368 0.82 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF486-201 - 463 3.1e-12 45.9 40.0 9 11 0.011 7.5 6.2 0.1 3 12 378 387 376 391 0.87 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF486-201 - 463 3.1e-12 45.9 40.0 10 11 0.00068 0.45 10.2 0.2 3 20 406 424 404 425 0.92 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF486-201 - 463 3.1e-12 45.9 40.0 11 11 0.011 7 6.3 0.1 3 19 434 451 432 453 0.75 Ubiquitin-Binding Zinc Finger zf-C2H2_11 PF16622.5 29 ZNF486-201 - 463 7.7e-12 44.7 24.3 1 9 0.11 75 3.2 0.1 5 17 210 222 207 232 0.74 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF486-201 - 463 7.7e-12 44.7 24.3 2 9 0.31 2.1e+02 1.8 0.1 5 14 238 247 235 257 0.84 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF486-201 - 463 7.7e-12 44.7 24.3 3 9 0.49 3.2e+02 1.2 0.1 7 26 268 287 266 288 0.79 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF486-201 - 463 7.7e-12 44.7 24.3 4 9 0.42 2.8e+02 1.4 0.0 5 26 294 315 291 316 0.83 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF486-201 - 463 7.7e-12 44.7 24.3 5 9 0.0021 1.4 8.8 0.2 7 26 324 343 321 344 0.90 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF486-201 - 463 7.7e-12 44.7 24.3 6 9 0.0044 2.9 7.7 0.2 5 26 350 371 347 372 0.86 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF486-201 - 463 7.7e-12 44.7 24.3 7 9 0.00014 0.093 12.5 0.1 5 25 378 398 375 400 0.93 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF486-201 - 463 7.7e-12 44.7 24.3 8 9 0.0043 2.8 7.8 0.0 5 23 406 424 403 426 0.87 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF486-201 - 463 7.7e-12 44.7 24.3 9 9 0.0013 0.9 9.4 0.0 5 26 434 455 431 456 0.93 zinc-finger C2H2-type Zn-ribbon_8 PF09723.10 40 ZNF486-201 - 463 1.7e-11 44.0 49.5 1 9 5.7 3.8e+03 -1.9 0.0 10 22 155 167 155 173 0.78 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF486-201 - 463 1.7e-11 44.0 49.5 2 9 0.0016 1.1 9.5 0.1 6 17 210 221 209 233 0.82 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF486-201 - 463 1.7e-11 44.0 49.5 3 9 3.1e-05 0.021 14.9 4.7 6 34 238 273 237 276 0.76 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF486-201 - 463 1.7e-11 44.0 49.5 4 9 0.00034 0.22 11.6 3.3 6 34 294 329 293 333 0.84 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF486-201 - 463 1.7e-11 44.0 49.5 5 9 0.00064 0.42 10.8 4.6 6 38 322 361 321 362 0.88 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF486-201 - 463 1.7e-11 44.0 49.5 6 9 2.9e-05 0.02 15.0 5.5 6 35 350 386 349 388 0.93 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF486-201 - 463 1.7e-11 44.0 49.5 7 9 8.8e-05 0.058 13.5 5.3 6 35 378 414 377 418 0.86 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF486-201 - 463 1.7e-11 44.0 49.5 8 9 0.0031 2.1 8.6 6.6 6 34 406 441 405 444 0.78 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF486-201 - 463 1.7e-11 44.0 49.5 9 9 0.0048 3.2 8.0 0.4 6 16 434 444 433 456 0.86 Zinc ribbon domain zf-C2H2_jaz PF12171.8 27 ZNF486-201 - 463 1.8e-07 31.2 61.5 1 10 8.6 5.7e+03 -2.2 1.6 22 27 168 173 168 173 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF486-201 - 463 1.8e-07 31.2 61.5 2 10 0.00035 0.23 11.8 0.6 2 22 210 230 209 232 0.90 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF486-201 - 463 1.8e-07 31.2 61.5 3 10 0.025 16 5.9 1.3 2 21 238 257 237 258 0.79 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF486-201 - 463 1.8e-07 31.2 61.5 4 10 0.22 1.5e+02 2.9 0.2 2 11 266 275 265 285 0.81 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF486-201 - 463 1.8e-07 31.2 61.5 5 10 4.3e-05 0.029 14.7 0.6 2 22 294 314 293 314 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF486-201 - 463 1.8e-07 31.2 61.5 6 10 0.015 10 6.6 0.1 2 22 322 342 321 342 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF486-201 - 463 1.8e-07 31.2 61.5 7 10 0.0073 4.8 7.6 0.1 2 21 350 369 349 370 0.91 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF486-201 - 463 1.8e-07 31.2 61.5 8 10 0.071 47 4.4 0.2 2 23 378 399 377 400 0.77 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF486-201 - 463 1.8e-07 31.2 61.5 9 10 0.00043 0.29 11.5 0.3 2 24 406 428 405 428 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF486-201 - 463 1.8e-07 31.2 61.5 10 10 0.0043 2.9 8.3 0.4 2 22 434 454 433 454 0.91 Zinc-finger double-stranded RNA-binding # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF486-201.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF486-201.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF486-201.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF486-201.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF486-201.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:07:18 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- KRAB PF01352.27 42 ZNF486-202 - 128 1.3e-23 82.3 0.6 1 1 9.9e-28 1.8e-23 81.9 0.6 2 42 13 53 12 53 0.97 KRAB box # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF486-202.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF486-202.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF486-202.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF486-202.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF486-202.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:07:19 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF487-201.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF487-201.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF487-201.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF487-201.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF487-201.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:07:19 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF487-202.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF487-202.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF487-202.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF487-202.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF487-202.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:07:19 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF487-203.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF487-203.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF487-203.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF487-203.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF487-203.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:07:20 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF487-204.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF487-204.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF487-204.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF487-204.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF487-204.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:07:20 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF487-205.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF487-205.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF487-205.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF487-205.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF487-205.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:07:20 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF487-206.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF487-206.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF487-206.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF487-206.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF487-206.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:07:21 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF488-201.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF488-201.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF488-201.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF488-201.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF488-201.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:07:21 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF488-202.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF488-202.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF488-202.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF488-202.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF488-202.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:07:21 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZNF490-201 - 529 6.3e-89 288.8 134.0 1 14 0.94 9.9e+02 0.5 0.4 11 24 152 165 151 167 0.79 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF490-201 - 529 6.3e-89 288.8 134.0 2 14 7e-08 7.4e-05 23.0 12.4 1 26 170 205 170 205 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF490-201 - 529 6.3e-89 288.8 134.0 3 14 2.4e-11 2.6e-08 33.9 0.6 3 25 210 232 208 232 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF490-201 - 529 6.3e-89 288.8 134.0 4 14 4e-12 4.2e-09 36.4 0.9 2 25 237 260 236 261 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF490-201 - 529 6.3e-89 288.8 134.0 5 14 9.6e-13 1e-09 38.4 1.5 1 24 264 287 264 289 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF490-201 - 529 6.3e-89 288.8 134.0 6 14 3.1e-10 3.3e-07 30.4 3.8 5 25 296 316 293 317 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF490-201 - 529 6.3e-89 288.8 134.0 7 14 1.3e-09 1.4e-06 28.5 1.2 2 24 321 343 320 345 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF490-201 - 529 6.3e-89 288.8 134.0 8 14 1.9e-10 2e-07 31.1 1.4 1 26 348 373 348 373 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF490-201 - 529 6.3e-89 288.8 134.0 9 14 3.4e-09 3.5e-06 27.2 2.9 4 26 379 401 376 401 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF490-201 - 529 6.3e-89 288.8 134.0 10 14 1.1e-10 1.2e-07 31.8 0.8 2 25 405 428 404 429 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF490-201 - 529 6.3e-89 288.8 134.0 11 14 2.8e-08 3e-05 24.2 3.1 2 24 433 455 432 457 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF490-201 - 529 6.3e-89 288.8 134.0 12 14 5.7e-09 6e-06 26.5 6.4 1 25 460 484 460 485 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF490-201 - 529 6.3e-89 288.8 134.0 13 14 9.8e-11 1e-07 32.0 0.7 1 25 488 512 488 513 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF490-201 - 529 6.3e-89 288.8 134.0 14 14 2.9 3.1e+03 -1.1 1.1 5 14 520 529 516 529 0.86 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZNF490-201 - 529 9e-51 167.6 124.1 1 14 4.5 4.8e+03 -1.6 0.1 6 16 133 143 130 145 0.80 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF490-201 - 529 9e-51 167.6 124.1 2 14 9.9e-07 0.001 19.4 3.1 2 23 157 178 156 178 0.95 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF490-201 - 529 9e-51 167.6 124.1 3 14 2e-07 0.00021 21.5 3.3 1 23 194 216 194 216 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF490-201 - 529 9e-51 167.6 124.1 4 14 2.9e-07 0.0003 21.1 0.5 1 23 222 244 222 244 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF490-201 - 529 9e-51 167.6 124.1 5 14 2.9e-07 0.00031 21.0 0.7 1 23 250 272 250 272 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF490-201 - 529 9e-51 167.6 124.1 6 14 6.7e-05 0.071 13.6 1.4 1 23 278 300 278 300 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF490-201 - 529 9e-51 167.6 124.1 7 14 1.8e-05 0.019 15.4 3.0 1 23 306 328 306 328 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF490-201 - 529 9e-51 167.6 124.1 8 14 4.4e-07 0.00047 20.5 3.1 1 23 334 356 334 356 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF490-201 - 529 9e-51 167.6 124.1 9 14 2.9e-06 0.003 17.9 2.5 1 23 362 384 362 384 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF490-201 - 529 9e-51 167.6 124.1 10 14 4.6e-08 4.9e-05 23.6 0.6 1 23 390 412 390 412 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF490-201 - 529 9e-51 167.6 124.1 11 14 2.5e-05 0.027 14.9 2.5 1 23 418 440 418 440 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF490-201 - 529 9e-51 167.6 124.1 12 14 2.2e-07 0.00023 21.4 3.4 1 23 446 468 446 468 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF490-201 - 529 9e-51 167.6 124.1 13 14 0.00048 0.5 10.9 4.4 2 23 475 496 474 496 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF490-201 - 529 9e-51 167.6 124.1 14 14 8.1e-07 0.00085 19.6 3.2 1 23 502 524 502 524 0.99 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZNF490-201 - 529 7.7e-45 147.7 117.2 1 13 4.1e-05 0.044 14.6 3.0 3 23 158 178 156 179 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF490-201 - 529 7.7e-45 147.7 117.2 2 13 1.1e-05 0.011 16.5 2.1 1 23 194 216 194 217 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF490-201 - 529 7.7e-45 147.7 117.2 3 13 3e-05 0.032 15.1 0.6 1 23 222 244 222 245 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF490-201 - 529 7.7e-45 147.7 117.2 4 13 1.2e-06 0.0012 19.5 0.6 1 23 250 272 250 273 0.97 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF490-201 - 529 7.7e-45 147.7 117.2 5 13 6.4e-06 0.0067 17.2 1.1 1 23 278 300 278 301 0.97 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF490-201 - 529 7.7e-45 147.7 117.2 6 13 5.2e-07 0.00055 20.6 2.7 1 23 306 328 306 329 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF490-201 - 529 7.7e-45 147.7 117.2 7 13 9.2e-07 0.00097 19.8 2.9 1 23 334 356 334 357 0.97 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF490-201 - 529 7.7e-45 147.7 117.2 8 13 0.00018 0.19 12.7 3.2 1 23 362 384 362 385 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF490-201 - 529 7.7e-45 147.7 117.2 9 13 8.9e-06 0.0094 16.7 0.7 1 23 390 412 390 413 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF490-201 - 529 7.7e-45 147.7 117.2 10 13 6.1e-05 0.064 14.1 1.9 1 23 418 440 418 441 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF490-201 - 529 7.7e-45 147.7 117.2 11 13 3.4e-06 0.0036 18.0 2.7 1 23 446 468 446 469 0.97 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF490-201 - 529 7.7e-45 147.7 117.2 12 13 4e-05 0.043 14.7 4.3 2 23 475 496 474 497 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF490-201 - 529 7.7e-45 147.7 117.2 13 13 2.4e-06 0.0026 18.5 3.1 1 23 502 524 502 525 0.96 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF490-201 - 529 3.8e-29 100.1 112.6 1 13 3.2e-07 0.00034 20.5 0.5 4 25 158 179 157 181 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF490-201 - 529 3.8e-29 100.1 112.6 2 13 5.6e-05 0.059 13.4 1.3 2 20 194 212 194 218 0.83 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF490-201 - 529 3.8e-29 100.1 112.6 3 13 0.00081 0.85 9.7 0.6 2 11 222 231 222 234 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF490-201 - 529 3.8e-29 100.1 112.6 4 13 1e-09 1e-06 28.5 1.0 2 24 250 272 250 275 0.96 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF490-201 - 529 3.8e-29 100.1 112.6 5 13 5.8e-05 0.061 13.3 1.3 2 24 278 300 278 303 0.90 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF490-201 - 529 3.8e-29 100.1 112.6 6 13 0.00034 0.35 10.9 3.4 2 24 306 328 306 331 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF490-201 - 529 3.8e-29 100.1 112.6 7 13 0.00054 0.56 10.3 2.5 2 24 334 356 334 358 0.96 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF490-201 - 529 3.8e-29 100.1 112.6 8 13 0.099 1e+02 3.0 3.7 2 13 362 373 362 384 0.87 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF490-201 - 529 3.8e-29 100.1 112.6 9 13 0.00019 0.2 11.7 1.0 2 13 390 401 390 402 0.96 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF490-201 - 529 3.8e-29 100.1 112.6 10 13 0.00058 0.61 10.1 0.9 2 11 418 427 417 442 0.87 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF490-201 - 529 3.8e-29 100.1 112.6 11 13 4.5e-05 0.048 13.7 2.4 2 24 446 468 446 470 0.97 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF490-201 - 529 3.8e-29 100.1 112.6 12 13 0.00019 0.2 11.7 2.4 3 24 475 496 475 499 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF490-201 - 529 3.8e-29 100.1 112.6 13 13 0.00063 0.66 10.0 4.7 2 26 502 526 502 527 0.94 C2H2-type zinc finger KRAB PF01352.27 42 ZNF490-201 - 529 2.6e-18 65.4 0.0 1 1 4.3e-21 4.5e-18 64.6 0.0 2 42 57 97 56 97 0.96 KRAB box zf-C2H2_11 PF16622.5 29 ZNF490-201 - 529 1.6e-13 50.2 76.6 1 13 2e-05 0.021 14.6 0.9 5 25 156 176 154 177 0.94 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF490-201 - 529 1.6e-13 50.2 76.6 2 13 0.00027 0.29 10.9 0.4 5 26 194 215 191 216 0.92 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF490-201 - 529 1.6e-13 50.2 76.6 3 13 0.0038 4 7.3 0.1 6 26 223 243 220 244 0.93 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF490-201 - 529 1.6e-13 50.2 76.6 4 13 0.0087 9.2 6.1 0.0 6 23 251 268 247 270 0.91 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF490-201 - 529 1.6e-13 50.2 76.6 5 13 0.24 2.5e+02 1.5 0.5 5 14 278 287 275 287 0.83 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF490-201 - 529 1.6e-13 50.2 76.6 6 13 0.025 27 4.7 0.6 6 23 307 324 304 326 0.89 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF490-201 - 529 1.6e-13 50.2 76.6 7 13 3.1e-06 0.0032 17.2 1.2 7 24 336 353 334 355 0.95 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF490-201 - 529 1.6e-13 50.2 76.6 8 13 0.22 2.3e+02 1.7 0.8 7 19 364 376 361 382 0.84 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF490-201 - 529 1.6e-13 50.2 76.6 9 13 0.017 18 5.2 0.3 6 23 391 408 388 412 0.85 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF490-201 - 529 1.6e-13 50.2 76.6 10 13 0.15 1.5e+02 2.2 0.2 3 14 416 427 415 430 0.84 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF490-201 - 529 1.6e-13 50.2 76.6 11 13 0.022 23 4.8 0.4 6 23 447 464 444 466 0.88 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF490-201 - 529 1.6e-13 50.2 76.6 12 13 0.00072 0.76 9.6 2.4 5 26 474 495 472 496 0.94 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF490-201 - 529 1.6e-13 50.2 76.6 13 13 0.00011 0.11 12.3 0.6 5 23 502 520 499 523 0.91 zinc-finger C2H2-type zf-trcl PF13451.6 48 ZNF490-201 - 529 6.3e-09 35.6 62.4 1 12 1.2 1.3e+03 -0.6 0.5 4 16 155 167 154 188 0.80 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF490-201 - 529 6.3e-09 35.6 62.4 2 12 0.0084 8.8 6.3 0.2 3 15 192 204 190 208 0.85 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF490-201 - 529 6.3e-09 35.6 62.4 3 12 0.0022 2.3 8.2 0.2 3 16 220 233 218 236 0.89 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF490-201 - 529 6.3e-09 35.6 62.4 4 12 0.051 54 3.8 0.1 4 15 249 260 247 264 0.81 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF490-201 - 529 6.3e-09 35.6 62.4 5 12 0.00037 0.39 10.7 0.1 3 17 276 290 274 301 0.92 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF490-201 - 529 6.3e-09 35.6 62.4 6 12 0.031 33 4.5 0.1 3 14 304 315 302 316 0.88 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF490-201 - 529 6.3e-09 35.6 62.4 7 12 0.0072 7.6 6.5 0.1 3 14 332 343 330 347 0.89 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF490-201 - 529 6.3e-09 35.6 62.4 8 12 0.11 1.2e+02 2.7 6.2 4 42 361 398 360 403 0.80 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF490-201 - 529 6.3e-09 35.6 62.4 9 12 0.0018 1.9 8.4 0.1 3 17 416 430 414 432 0.89 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF490-201 - 529 6.3e-09 35.6 62.4 10 12 0.0018 1.9 8.4 0.0 2 17 443 458 442 461 0.87 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF490-201 - 529 6.3e-09 35.6 62.4 11 12 0.54 5.7e+02 0.5 3.8 3 15 472 484 472 486 0.85 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF490-201 - 529 6.3e-09 35.6 62.4 12 12 0.0095 10 6.1 0.1 3 17 500 514 499 516 0.84 Probable zinc-ribbon domain # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF490-201.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF490-201.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF490-201.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF490-201.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF490-201.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:07:22 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF490-202.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF490-202.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF490-202.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF490-202.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF490-202.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:07:22 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF490-203.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF490-203.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF490-203.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF490-203.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF490-203.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:07:23 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF490-204.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF490-204.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF490-204.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF490-204.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF490-204.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:07:23 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZNF492-201 - 531 1.3e-104 338.4 113.5 1 15 0.79 5.4e+02 1.3 0.2 10 24 108 122 106 124 0.79 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF492-201 - 531 1.3e-104 338.4 113.5 2 15 4.7e-08 3.2e-05 24.1 3.0 3 24 129 150 127 150 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF492-201 - 531 1.3e-104 338.4 113.5 3 15 9.8e-10 6.8e-07 29.4 2.1 1 25 155 179 155 180 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF492-201 - 531 1.3e-104 338.4 113.5 4 15 8.1e-12 5.6e-09 36.0 1.8 1 25 183 207 183 208 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF492-201 - 531 1.3e-104 338.4 113.5 5 15 2.1e-10 1.5e-07 31.6 2.1 1 25 211 235 211 236 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF492-201 - 531 1.3e-104 338.4 113.5 6 15 2.7e-11 1.9e-08 34.4 0.7 1 25 239 263 239 264 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF492-201 - 531 1.3e-104 338.4 113.5 7 15 2.5e-09 1.7e-06 28.2 0.2 2 25 268 291 267 292 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF492-201 - 531 1.3e-104 338.4 113.5 8 15 1.1e-09 7.5e-07 29.3 0.8 2 25 296 319 295 320 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF492-201 - 531 1.3e-104 338.4 113.5 9 15 9.6e-11 6.6e-08 32.6 2.9 1 26 323 348 323 348 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF492-201 - 531 1.3e-104 338.4 113.5 10 15 1e-08 7.2e-06 26.2 1.3 2 25 352 375 351 376 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF492-201 - 531 1.3e-104 338.4 113.5 11 15 4.3e-11 3e-08 33.7 2.7 1 25 379 403 379 403 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF492-201 - 531 1.3e-104 338.4 113.5 12 15 8.6e-11 5.9e-08 32.8 0.5 2 25 408 431 407 432 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF492-201 - 531 1.3e-104 338.4 113.5 13 15 1.4e-08 9.8e-06 25.8 0.3 2 25 436 459 435 460 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF492-201 - 531 1.3e-104 338.4 113.5 14 15 2e-10 1.4e-07 31.6 2.1 1 26 463 488 463 488 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF492-201 - 531 1.3e-104 338.4 113.5 15 15 0.00022 0.15 12.5 0.2 2 22 492 512 491 516 0.82 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZNF492-201 - 531 4.5e-70 228.4 103.0 1 14 7.3 5e+03 -1.7 1.4 6 23 115 135 113 135 0.80 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF492-201 - 531 4.5e-70 228.4 103.0 2 14 5.3e-06 0.0036 17.7 5.3 1 23 141 163 141 163 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF492-201 - 531 4.5e-70 228.4 103.0 3 14 3.9e-07 0.00027 21.2 0.9 1 23 169 191 169 191 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF492-201 - 531 4.5e-70 228.4 103.0 4 14 3e-08 2.1e-05 24.7 1.2 1 23 197 219 197 219 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF492-201 - 531 4.5e-70 228.4 103.0 5 14 9.1e-09 6.3e-06 26.4 0.4 1 23 225 247 225 247 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF492-201 - 531 4.5e-70 228.4 103.0 6 14 6.2e-08 4.2e-05 23.7 0.2 1 23 253 275 253 275 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF492-201 - 531 4.5e-70 228.4 103.0 7 14 4.6e-08 3.2e-05 24.1 0.4 1 23 281 303 281 303 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF492-201 - 531 4.5e-70 228.4 103.0 8 14 9.2e-09 6.4e-06 26.3 1.9 1 23 309 331 309 331 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF492-201 - 531 4.5e-70 228.4 103.0 9 14 6.3e-09 4.3e-06 26.9 1.1 1 23 337 359 337 359 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF492-201 - 531 4.5e-70 228.4 103.0 10 14 1.7e-07 0.00011 22.4 4.0 1 23 365 387 365 387 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF492-201 - 531 4.5e-70 228.4 103.0 11 14 5.3e-07 0.00037 20.8 0.3 1 23 393 415 393 415 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF492-201 - 531 4.5e-70 228.4 103.0 12 14 1.5e-07 0.0001 22.5 0.5 1 23 421 443 421 443 0.95 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF492-201 - 531 4.5e-70 228.4 103.0 13 14 8e-06 0.0055 17.1 0.5 5 23 453 471 451 471 0.95 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF492-201 - 531 4.5e-70 228.4 103.0 14 14 9.2e-07 0.00063 20.1 0.4 1 23 477 499 477 499 0.98 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZNF492-201 - 531 2.5e-40 133.7 89.2 1 13 0.00095 0.65 11.0 5.4 1 23 141 163 141 164 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF492-201 - 531 2.5e-40 133.7 89.2 2 13 5.1e-05 0.035 14.9 0.6 1 23 169 191 169 192 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF492-201 - 531 2.5e-40 133.7 89.2 3 13 4.8e-05 0.033 15.0 0.9 1 23 197 219 197 220 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF492-201 - 531 2.5e-40 133.7 89.2 4 13 3.3e-05 0.023 15.5 0.3 1 23 225 247 225 248 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF492-201 - 531 2.5e-40 133.7 89.2 5 13 2.5e-05 0.017 15.9 0.2 1 23 253 275 253 276 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF492-201 - 531 2.5e-40 133.7 89.2 6 13 2e-05 0.014 16.2 0.4 1 23 281 303 281 304 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF492-201 - 531 2.5e-40 133.7 89.2 7 13 1.8e-05 0.013 16.3 1.8 1 23 309 331 309 332 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF492-201 - 531 2.5e-40 133.7 89.2 8 13 1e-05 0.0071 17.1 0.6 1 23 337 359 337 360 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF492-201 - 531 2.5e-40 133.7 89.2 9 13 5.5e-05 0.038 14.8 3.2 1 23 365 387 365 388 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF492-201 - 531 2.5e-40 133.7 89.2 10 13 0.0001 0.07 14.0 0.3 1 23 393 415 393 416 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF492-201 - 531 2.5e-40 133.7 89.2 11 13 1.9e-05 0.013 16.3 0.6 1 23 421 443 421 444 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF492-201 - 531 2.5e-40 133.7 89.2 12 13 0.024 16 6.6 0.3 5 23 453 471 452 472 0.88 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF492-201 - 531 2.5e-40 133.7 89.2 13 13 4e-05 0.028 15.3 0.3 1 23 477 499 477 500 0.90 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF492-201 - 531 3.7e-23 81.0 99.2 1 13 0.00097 0.67 10.0 5.2 2 24 141 163 140 166 0.90 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF492-201 - 531 3.7e-23 81.0 99.2 2 13 0.00012 0.084 12.9 1.8 2 24 169 191 169 194 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF492-201 - 531 3.7e-23 81.0 99.2 3 13 9.5e-06 0.0066 16.4 1.5 2 24 197 219 197 222 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF492-201 - 531 3.7e-23 81.0 99.2 4 13 1.7e-05 0.012 15.6 0.7 2 24 225 247 225 250 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF492-201 - 531 3.7e-23 81.0 99.2 5 13 0.0052 3.6 7.7 0.3 2 22 253 273 253 277 0.86 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF492-201 - 531 3.7e-23 81.0 99.2 6 13 0.00071 0.49 10.5 0.8 2 24 281 303 281 306 0.90 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF492-201 - 531 3.7e-23 81.0 99.2 7 13 2.7e-05 0.019 15.0 2.8 2 25 309 332 308 334 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF492-201 - 531 3.7e-23 81.0 99.2 8 13 0.00048 0.33 11.0 1.2 2 24 337 359 337 362 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF492-201 - 531 3.7e-23 81.0 99.2 9 13 1.1e-05 0.0077 16.2 2.7 2 24 365 387 364 390 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF492-201 - 531 3.7e-23 81.0 99.2 10 13 0.0012 0.8 9.8 0.5 2 24 393 415 393 418 0.88 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF492-201 - 531 3.7e-23 81.0 99.2 11 13 0.0076 5.2 7.2 0.8 2 12 421 431 421 443 0.83 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF492-201 - 531 3.7e-23 81.0 99.2 12 13 0.48 3.3e+02 1.4 0.3 6 21 453 468 452 471 0.83 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF492-201 - 531 3.7e-23 81.0 99.2 13 13 0.0068 4.7 7.3 0.2 2 12 477 487 477 497 0.92 C2H2-type zinc finger XPA_N PF01286.18 32 ZNF492-201 - 531 1.1e-19 70.1 56.8 1 13 0.087 60 3.8 2.1 3 12 142 151 141 158 0.91 XPA protein N-terminal XPA_N PF01286.18 32 ZNF492-201 - 531 1.1e-19 70.1 56.8 2 13 0.077 53 4.0 0.1 3 10 170 177 168 187 0.82 XPA protein N-terminal XPA_N PF01286.18 32 ZNF492-201 - 531 1.1e-19 70.1 56.8 3 13 0.0052 3.6 7.7 0.1 3 12 198 207 196 214 0.90 XPA protein N-terminal XPA_N PF01286.18 32 ZNF492-201 - 531 1.1e-19 70.1 56.8 4 13 0.0006 0.41 10.7 0.1 3 14 226 237 224 243 0.88 XPA protein N-terminal XPA_N PF01286.18 32 ZNF492-201 - 531 1.1e-19 70.1 56.8 5 13 0.0022 1.5 8.9 0.2 3 14 254 265 252 269 0.91 XPA protein N-terminal XPA_N PF01286.18 32 ZNF492-201 - 531 1.1e-19 70.1 56.8 6 13 0.00048 0.33 11.0 0.2 3 14 282 293 280 300 0.86 XPA protein N-terminal XPA_N PF01286.18 32 ZNF492-201 - 531 1.1e-19 70.1 56.8 7 13 0.0039 2.7 8.1 0.2 3 12 310 319 309 327 0.85 XPA protein N-terminal XPA_N PF01286.18 32 ZNF492-201 - 531 1.1e-19 70.1 56.8 8 13 0.00037 0.26 11.4 0.2 3 14 338 349 336 355 0.87 XPA protein N-terminal XPA_N PF01286.18 32 ZNF492-201 - 531 1.1e-19 70.1 56.8 9 13 0.39 2.7e+02 1.7 0.1 3 11 366 374 365 380 0.87 XPA protein N-terminal XPA_N PF01286.18 32 ZNF492-201 - 531 1.1e-19 70.1 56.8 10 13 0.0014 0.94 9.6 0.2 3 14 394 405 392 411 0.79 XPA protein N-terminal XPA_N PF01286.18 32 ZNF492-201 - 531 1.1e-19 70.1 56.8 11 13 0.00069 0.48 10.5 0.3 3 14 422 433 420 439 0.87 XPA protein N-terminal XPA_N PF01286.18 32 ZNF492-201 - 531 1.1e-19 70.1 56.8 12 13 0.084 58 3.8 0.0 5 17 452 464 452 468 0.80 XPA protein N-terminal XPA_N PF01286.18 32 ZNF492-201 - 531 1.1e-19 70.1 56.8 13 13 0.00041 0.28 11.2 0.1 3 16 478 491 476 496 0.85 XPA protein N-terminal zf-C2H2_jaz PF12171.8 27 ZNF492-201 - 531 1e-15 57.5 65.5 1 13 0.055 38 4.7 1.8 2 11 141 150 140 161 0.84 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF492-201 - 531 1e-15 57.5 65.5 2 13 0.013 8.9 6.7 0.2 2 22 169 189 168 189 0.91 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF492-201 - 531 1e-15 57.5 65.5 3 13 0.0055 3.8 7.9 0.2 2 21 197 216 196 217 0.91 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF492-201 - 531 1e-15 57.5 65.5 4 13 0.0016 1.1 9.6 0.1 2 22 225 245 224 245 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF492-201 - 531 1e-15 57.5 65.5 5 13 0.0041 2.8 8.3 0.0 2 21 253 272 252 273 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF492-201 - 531 1e-15 57.5 65.5 6 13 0.0017 1.2 9.5 0.1 2 21 281 300 280 301 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF492-201 - 531 1e-15 57.5 65.5 7 13 0.066 45 4.5 0.4 2 21 309 328 309 329 0.84 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF492-201 - 531 1e-15 57.5 65.5 8 13 0.00031 0.21 11.9 0.1 2 22 337 357 336 357 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF492-201 - 531 1e-15 57.5 65.5 9 13 0.02 14 6.1 0.9 2 21 365 384 365 385 0.83 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF492-201 - 531 1e-15 57.5 65.5 10 13 0.0026 1.8 8.9 0.1 2 21 393 412 392 413 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF492-201 - 531 1e-15 57.5 65.5 11 13 0.0027 1.9 8.9 0.2 2 20 421 439 420 440 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF492-201 - 531 1e-15 57.5 65.5 12 13 1.9 1.3e+03 -0.2 0.2 6 20 453 467 452 468 0.85 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF492-201 - 531 1e-15 57.5 65.5 13 13 0.00047 0.32 11.3 0.2 2 20 477 495 476 496 0.92 Zinc-finger double-stranded RNA-binding zf_UBZ PF18439.1 32 ZNF492-201 - 531 1.3e-14 53.5 58.0 1 13 0.11 74 3.1 1.4 2 13 140 151 139 160 0.78 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF492-201 - 531 1.3e-14 53.5 58.0 2 13 0.01 7.1 6.3 0.1 3 20 169 187 167 188 0.81 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF492-201 - 531 1.3e-14 53.5 58.0 3 13 0.0075 5.2 6.8 0.2 3 13 197 207 195 216 0.80 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF492-201 - 531 1.3e-14 53.5 58.0 4 13 0.0012 0.85 9.3 0.1 3 20 225 243 223 244 0.87 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF492-201 - 531 1.3e-14 53.5 58.0 5 13 0.0027 1.9 8.2 0.1 3 20 253 271 251 272 0.84 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF492-201 - 531 1.3e-14 53.5 58.0 6 13 0.00047 0.32 10.6 0.2 3 20 281 299 279 300 0.88 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF492-201 - 531 1.3e-14 53.5 58.0 7 13 0.0021 1.5 8.5 0.2 3 16 309 323 307 328 0.77 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF492-201 - 531 1.3e-14 53.5 58.0 8 13 0.00092 0.63 9.7 0.2 3 20 337 355 335 356 0.87 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF492-201 - 531 1.3e-14 53.5 58.0 9 13 0.25 1.7e+02 1.9 0.2 3 17 365 380 363 384 0.77 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF492-201 - 531 1.3e-14 53.5 58.0 10 13 0.00053 0.37 10.4 0.1 3 20 393 411 391 412 0.90 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF492-201 - 531 1.3e-14 53.5 58.0 11 13 0.0034 2.4 7.8 0.2 3 15 421 433 419 440 0.79 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF492-201 - 531 1.3e-14 53.5 58.0 12 13 1.4 9.7e+02 -0.5 0.1 6 20 452 467 452 468 0.77 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF492-201 - 531 1.3e-14 53.5 58.0 13 13 0.0072 5 6.8 0.1 3 13 477 487 475 495 0.84 Ubiquitin-Binding Zinc Finger Zn-ribbon_8 PF09723.10 40 ZNF492-201 - 531 4.2e-11 42.8 82.3 1 14 0.048 33 4.7 8.0 6 35 141 177 140 181 0.77 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF492-201 - 531 4.2e-11 42.8 82.3 2 14 0.013 8.9 6.5 0.5 6 19 169 182 168 191 0.80 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF492-201 - 531 4.2e-11 42.8 82.3 3 14 0.00057 0.39 10.9 0.1 6 20 197 211 196 219 0.86 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF492-201 - 531 4.2e-11 42.8 82.3 4 14 0.00034 0.23 11.6 6.2 6 35 225 261 224 265 0.84 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF492-201 - 531 4.2e-11 42.8 82.3 5 14 0.00057 0.39 10.9 6.5 6 35 253 289 252 292 0.82 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF492-201 - 531 4.2e-11 42.8 82.3 6 14 0.0036 2.5 8.3 0.7 6 17 281 292 279 301 0.84 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF492-201 - 531 4.2e-11 42.8 82.3 7 14 0.00017 0.12 12.5 6.0 6 36 309 346 308 348 0.75 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF492-201 - 531 4.2e-11 42.8 82.3 8 14 0.0036 2.5 8.3 0.7 6 17 337 348 336 359 0.82 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF492-201 - 531 4.2e-11 42.8 82.3 9 14 0.014 9.3 6.5 5.7 6 34 365 400 364 403 0.75 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF492-201 - 531 4.2e-11 42.8 82.3 10 14 0.00025 0.17 12.0 6.0 6 35 393 429 392 432 0.86 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF492-201 - 531 4.2e-11 42.8 82.3 11 14 0.002 1.4 9.1 0.6 6 19 421 434 419 443 0.81 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF492-201 - 531 4.2e-11 42.8 82.3 12 14 0.016 11 6.3 3.2 10 34 453 484 448 488 0.61 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF492-201 - 531 4.2e-11 42.8 82.3 13 14 0.0074 5.1 7.3 1.8 6 16 477 487 476 514 0.80 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF492-201 - 531 4.2e-11 42.8 82.3 14 14 8.6 5.9e+03 -2.5 0.1 6 22 505 521 504 527 0.70 Zinc ribbon domain zf-C2H2_11 PF16622.5 29 ZNF492-201 - 531 1.8e-10 40.4 46.2 1 11 1.6 1.1e+03 -0.5 2.9 4 26 140 162 138 163 0.74 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF492-201 - 531 1.8e-10 40.4 46.2 2 11 0.016 11 5.9 0.0 5 26 169 190 166 191 0.85 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF492-201 - 531 1.8e-10 40.4 46.2 3 11 0.23 1.6e+02 2.2 0.1 5 14 197 206 195 219 0.80 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF492-201 - 531 1.8e-10 40.4 46.2 4 11 0.039 27 4.6 0.0 5 26 225 246 223 247 0.87 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF492-201 - 531 1.8e-10 40.4 46.2 5 11 0.00069 0.47 10.2 0.1 5 26 253 274 250 275 0.88 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF492-201 - 531 1.8e-10 40.4 46.2 6 11 0.0036 2.5 8.0 0.1 5 26 281 302 278 303 0.89 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF492-201 - 531 1.8e-10 40.4 46.2 7 11 0.04 28 4.6 0.7 5 26 309 330 308 331 0.77 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF492-201 - 531 1.8e-10 40.4 46.2 8 11 0.048 33 4.3 0.1 5 26 337 358 334 359 0.84 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF492-201 - 531 1.8e-10 40.4 46.2 9 11 0.054 38 4.2 0.1 5 24 393 412 390 415 0.75 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF492-201 - 531 1.8e-10 40.4 46.2 10 11 0.0012 0.85 9.4 0.0 5 26 421 442 418 443 0.91 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF492-201 - 531 1.8e-10 40.4 46.2 11 11 0.00027 0.19 11.6 0.0 5 26 477 498 474 499 0.91 zinc-finger C2H2-type # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF492-201.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF492-201.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF492-201.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF492-201.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF492-201.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:07:24 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- SCAN PF02023.17 90 ZNF496-201 - 587 3.3e-40 135.8 0.7 1 1 7.5e-43 6.4e-40 134.9 0.7 1 88 38 125 38 127 0.98 SCAN domain zf-C2H2 PF00096.26 23 ZNF496-201 - 587 1.5e-18 66.1 36.9 1 5 2.2e-05 0.019 15.4 0.2 1 21 406 426 406 427 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF496-201 - 587 1.5e-18 66.1 36.9 2 5 0.0005 0.43 11.1 0.1 1 23 435 457 435 457 0.95 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF496-201 - 587 1.5e-18 66.1 36.9 3 5 2.2e-07 0.00019 21.7 1.9 1 23 463 485 463 485 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF496-201 - 587 1.5e-18 66.1 36.9 4 5 0.00012 0.1 13.1 8.7 1 23 522 545 522 545 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF496-201 - 587 1.5e-18 66.1 36.9 5 5 2e-07 0.00017 21.9 2.1 1 23 553 575 553 575 0.98 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZNF496-201 - 587 1.5e-12 47.2 35.4 1 5 0.006 5.1 8.2 0.2 1 22 406 427 406 429 0.82 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF496-201 - 587 1.5e-12 47.2 35.4 2 5 1.6e-05 0.013 16.3 0.1 1 23 435 457 435 458 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF496-201 - 587 1.5e-12 47.2 35.4 3 5 0.00014 0.12 13.3 1.2 1 23 463 485 463 486 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF496-201 - 587 1.5e-12 47.2 35.4 4 5 0.0075 6.4 7.9 8.3 1 23 522 544 522 545 0.89 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF496-201 - 587 1.5e-12 47.2 35.4 5 5 3.4e-06 0.0029 18.3 1.4 1 23 553 575 553 576 0.96 C2H2-type zinc finger zf-H2C2_2 PF13465.6 26 ZNF496-201 - 587 3.8e-09 36.6 39.7 1 6 0.0011 0.9 10.1 0.2 9 24 400 415 398 416 0.88 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF496-201 - 587 3.8e-09 36.6 39.7 2 6 7.5e-06 0.0064 16.9 0.3 1 24 420 444 420 445 0.84 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF496-201 - 587 3.8e-09 36.6 39.7 3 6 1.4e-05 0.012 16.0 0.1 2 24 450 472 449 473 0.90 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF496-201 - 587 3.8e-09 36.6 39.7 4 6 1.6 1.4e+03 0.0 4.3 15 24 513 531 474 533 0.53 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF496-201 - 587 3.8e-09 36.6 39.7 5 6 0.00032 0.27 11.7 4.4 1 25 536 563 536 564 0.87 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF496-201 - 587 3.8e-09 36.6 39.7 6 6 1.2 1e+03 0.4 0.8 2 11 568 577 567 581 0.83 Zinc-finger double domain # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF496-201.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF496-201.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF496-201.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF496-201.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF496-201.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:07:24 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-C2H2 PF00096.26 23 ZNF496-202 - 390 1.4e-19 69.3 36.9 1 5 1.4e-05 0.011 16.1 0.2 1 21 209 229 209 230 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF496-202 - 390 1.4e-19 69.3 36.9 2 5 0.00032 0.26 11.8 0.1 1 23 238 260 238 260 0.95 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF496-202 - 390 1.4e-19 69.3 36.9 3 5 1.4e-07 0.00012 22.4 1.9 1 23 266 288 266 288 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF496-202 - 390 1.4e-19 69.3 36.9 4 5 7.5e-05 0.061 13.8 8.7 1 23 325 348 325 348 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF496-202 - 390 1.4e-19 69.3 36.9 5 5 1.3e-07 0.0001 22.5 2.1 1 23 356 378 356 378 0.98 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZNF496-202 - 390 6.5e-13 48.3 37.4 1 5 0.0038 3.1 8.9 0.2 1 22 209 230 209 232 0.82 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF496-202 - 390 6.5e-13 48.3 37.4 2 5 9.9e-06 0.008 16.9 0.1 1 23 238 260 238 261 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF496-202 - 390 6.5e-13 48.3 37.4 3 5 8.8e-05 0.072 14.0 1.2 1 23 266 288 266 289 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF496-202 - 390 6.5e-13 48.3 37.4 4 5 0.0048 3.9 8.6 8.3 1 23 325 347 325 348 0.89 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF496-202 - 390 6.5e-13 48.3 37.4 5 5 2.1e-06 0.0017 19.0 1.4 1 23 356 378 356 379 0.96 C2H2-type zinc finger zf-H2C2_2 PF13465.6 26 ZNF496-202 - 390 3.7e-10 39.8 40.5 1 6 0.00068 0.56 10.7 0.2 9 24 203 218 201 219 0.88 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF496-202 - 390 3.7e-10 39.8 40.5 2 6 4.8e-06 0.0039 17.6 0.3 1 24 223 247 223 248 0.85 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF496-202 - 390 3.7e-10 39.8 40.5 3 6 9.3e-06 0.0076 16.6 0.1 2 24 253 275 252 276 0.90 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF496-202 - 390 3.7e-10 39.8 40.5 4 6 1.7 1.4e+03 -0.0 5.1 15 24 316 334 277 336 0.52 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF496-202 - 390 3.7e-10 39.8 40.5 5 6 0.0002 0.16 12.4 4.4 1 25 339 366 339 367 0.87 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF496-202 - 390 3.7e-10 39.8 40.5 6 6 0.78 6.4e+02 1.1 0.8 2 11 371 380 370 384 0.83 Zinc-finger double domain # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF496-202.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF496-202.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF496-202.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF496-202.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF496-202.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:07:24 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF496-203.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF496-203.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF496-203.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF496-203.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF496-203.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:07:25 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF496-204.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF496-204.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF496-204.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF496-204.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF496-204.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:07:25 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF496-205.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF496-205.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF496-205.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF496-205.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF496-205.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:07:25 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZNF501-201 - 271 2.6e-73 239.4 63.1 1 10 0.0011 0.64 10.6 0.4 10 25 17 32 8 33 0.79 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF501-201 - 271 2.6e-73 239.4 63.1 2 10 3.1e-09 1.9e-06 28.0 1.4 1 24 36 59 36 61 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF501-201 - 271 2.6e-73 239.4 63.1 3 10 6.7e-12 4e-09 36.5 0.6 1 24 64 87 64 89 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF501-201 - 271 2.6e-73 239.4 63.1 4 10 1.8e-11 1.1e-08 35.1 0.3 2 24 93 115 93 115 0.97 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF501-201 - 271 2.6e-73 239.4 63.1 5 10 4.4e-12 2.6e-09 37.1 0.5 2 25 121 144 120 145 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF501-201 - 271 2.6e-73 239.4 63.1 6 10 6.9e-11 4.1e-08 33.3 0.5 2 25 149 172 149 173 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF501-201 - 271 2.6e-73 239.4 63.1 7 10 2.9e-11 1.7e-08 34.5 0.2 2 25 177 200 177 201 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF501-201 - 271 2.6e-73 239.4 63.1 8 10 2.2e-10 1.3e-07 31.7 1.8 1 25 204 228 204 229 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF501-201 - 271 2.6e-73 239.4 63.1 9 10 4.4e-10 2.6e-07 30.7 2.6 1 26 232 257 232 257 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF501-201 - 271 2.6e-73 239.4 63.1 10 10 0.26 1.6e+02 3.0 0.1 1 12 260 271 260 271 0.87 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZNF501-201 - 271 3.9e-54 178.2 70.8 1 9 2.5e-08 1.5e-05 25.2 1.8 2 23 23 44 22 44 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF501-201 - 271 3.9e-54 178.2 70.8 2 9 3.9e-08 2.3e-05 24.6 2.4 1 23 50 72 50 72 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF501-201 - 271 3.9e-54 178.2 70.8 3 9 7.6e-06 0.0045 17.4 0.2 1 23 78 100 78 100 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF501-201 - 271 3.9e-54 178.2 70.8 4 9 1e-08 6.2e-06 26.4 1.5 1 23 106 128 106 128 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF501-201 - 271 3.9e-54 178.2 70.8 5 9 2.9e-08 1.7e-05 25.0 3.0 1 23 134 156 134 156 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF501-201 - 271 3.9e-54 178.2 70.8 6 9 2.6e-08 1.6e-05 25.1 1.5 1 23 162 184 162 184 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF501-201 - 271 3.9e-54 178.2 70.8 7 9 3.1e-09 1.9e-06 28.0 0.4 1 23 190 212 190 212 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF501-201 - 271 3.9e-54 178.2 70.8 8 9 2.7e-07 0.00016 21.9 3.1 1 23 218 240 218 240 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF501-201 - 271 3.9e-54 178.2 70.8 9 9 2.6e-09 1.6e-06 28.3 1.3 1 23 246 268 246 268 0.98 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZNF501-201 - 271 6.8e-28 95.0 69.3 1 9 0.00014 0.084 13.8 1.6 2 23 23 44 22 45 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF501-201 - 271 6.8e-28 95.0 69.3 2 9 0.0002 0.12 13.3 2.2 1 23 50 72 50 73 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF501-201 - 271 6.8e-28 95.0 69.3 3 9 5.9e-05 0.035 14.9 0.3 1 23 78 100 78 101 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF501-201 - 271 6.8e-28 95.0 69.3 4 9 2.3e-05 0.014 16.2 1.5 1 23 106 128 106 129 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF501-201 - 271 6.8e-28 95.0 69.3 5 9 2.4e-05 0.014 16.2 2.8 1 23 134 156 134 157 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF501-201 - 271 6.8e-28 95.0 69.3 6 9 4.6e-05 0.028 15.3 1.6 1 23 162 184 162 185 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF501-201 - 271 6.8e-28 95.0 69.3 7 9 6.6e-06 0.0039 17.9 0.4 1 23 190 212 190 213 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF501-201 - 271 6.8e-28 95.0 69.3 8 9 6.7e-05 0.04 14.8 2.5 1 23 218 240 218 241 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF501-201 - 271 6.8e-28 95.0 69.3 9 9 2e-05 0.012 16.4 0.9 1 23 246 268 246 269 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF501-201 - 271 6.1e-13 48.4 68.9 1 9 0.0055 3.3 7.8 1.8 3 26 23 46 23 47 0.91 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF501-201 - 271 6.1e-13 48.4 68.9 2 9 0.00021 0.12 12.4 2.0 2 24 50 72 50 75 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF501-201 - 271 6.1e-13 48.4 68.9 3 9 0.00052 0.31 11.1 0.2 2 13 78 89 78 100 0.91 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF501-201 - 271 6.1e-13 48.4 68.9 4 9 0.0021 1.3 9.2 1.3 2 20 106 124 106 130 0.77 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF501-201 - 271 6.1e-13 48.4 68.9 5 9 0.0081 4.8 7.3 4.6 2 12 134 144 134 158 0.78 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF501-201 - 271 6.1e-13 48.4 68.9 6 9 0.0017 1 9.5 1.1 2 12 162 172 162 185 0.88 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF501-201 - 271 6.1e-13 48.4 68.9 7 9 0.00011 0.067 13.2 0.6 2 24 190 212 190 215 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF501-201 - 271 6.1e-13 48.4 68.9 8 9 5.8e-05 0.035 14.1 2.1 2 20 218 236 217 241 0.86 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF501-201 - 271 6.1e-13 48.4 68.9 9 9 0.047 28 4.9 0.5 2 13 246 257 246 269 0.79 C2H2-type zinc finger zf-C2H2_11 PF16622.5 29 ZNF501-201 - 271 1.7e-12 46.8 59.1 1 10 0.93 5.5e+02 0.4 0.1 15 21 3 9 2 14 0.86 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF501-201 - 271 1.7e-12 46.8 59.1 2 10 0.0003 0.18 11.6 1.5 6 26 23 43 21 44 0.95 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF501-201 - 271 1.7e-12 46.8 59.1 3 10 0.00039 0.23 11.2 3.1 7 26 52 71 50 72 0.96 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF501-201 - 271 1.7e-12 46.8 59.1 4 10 0.046 27 4.6 0.0 5 26 78 99 75 100 0.93 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF501-201 - 271 1.7e-12 46.8 59.1 5 10 6.4e-05 0.038 13.7 0.4 5 26 106 127 103 128 0.94 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF501-201 - 271 1.7e-12 46.8 59.1 6 10 1.1e-05 0.0066 16.2 0.9 5 24 134 153 131 154 0.92 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF501-201 - 271 1.7e-12 46.8 59.1 7 10 0.011 6.8 6.5 1.0 5 26 162 183 160 184 0.92 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF501-201 - 271 1.7e-12 46.8 59.1 8 10 0.0013 0.76 9.6 0.0 7 23 192 208 188 211 0.89 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF501-201 - 271 1.7e-12 46.8 59.1 9 10 0.065 39 4.1 0.8 5 26 218 239 216 240 0.94 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF501-201 - 271 1.7e-12 46.8 59.1 10 10 0.096 57 3.6 1.5 6 25 247 266 244 268 0.89 zinc-finger C2H2-type zf-C2H2_jaz PF12171.8 27 ZNF501-201 - 271 2.9e-09 36.9 44.3 1 9 0.023 14 6.1 0.1 3 22 23 42 21 42 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF501-201 - 271 2.9e-09 36.9 44.3 2 9 0.13 78 3.7 0.3 2 22 50 70 49 70 0.89 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF501-201 - 271 2.9e-09 36.9 44.3 3 9 0.0004 0.24 11.7 0.2 2 22 78 98 77 98 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF501-201 - 271 2.9e-09 36.9 44.3 4 9 1.7 1e+03 0.2 0.4 2 11 106 115 105 115 0.87 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF501-201 - 271 2.9e-09 36.9 44.3 5 9 0.023 14 6.1 1.1 2 24 134 156 133 157 0.90 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF501-201 - 271 2.9e-09 36.9 44.3 6 9 0.14 83 3.6 1.1 2 20 162 180 161 182 0.79 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF501-201 - 271 2.9e-09 36.9 44.3 7 9 0.00086 0.51 10.7 0.1 2 24 190 212 189 212 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF501-201 - 271 2.9e-09 36.9 44.3 8 9 0.00033 0.2 12.0 1.7 2 22 218 238 217 238 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF501-201 - 271 2.9e-09 36.9 44.3 9 9 0.0025 1.5 9.2 0.0 2 22 246 266 245 266 0.93 Zinc-finger double-stranded RNA-binding XPA_N PF01286.18 32 ZNF501-201 - 271 4.3e-09 36.2 43.6 1 9 0.028 17 5.6 0.2 2 12 22 32 21 39 0.87 XPA protein N-terminal XPA_N PF01286.18 32 ZNF501-201 - 271 4.3e-09 36.2 43.6 2 9 0.15 87 3.3 0.5 3 12 51 60 49 68 0.83 XPA protein N-terminal XPA_N PF01286.18 32 ZNF501-201 - 271 4.3e-09 36.2 43.6 3 9 0.015 9 6.4 0.5 3 12 79 88 77 90 0.89 XPA protein N-terminal XPA_N PF01286.18 32 ZNF501-201 - 271 4.3e-09 36.2 43.6 4 9 0.0012 0.69 10.0 0.9 3 14 107 118 105 119 0.93 XPA protein N-terminal XPA_N PF01286.18 32 ZNF501-201 - 271 4.3e-09 36.2 43.6 5 9 0.0011 0.63 10.1 0.4 3 14 135 146 133 152 0.88 XPA protein N-terminal XPA_N PF01286.18 32 ZNF501-201 - 271 4.3e-09 36.2 43.6 6 9 0.0019 1.1 9.3 0.7 3 14 163 174 161 180 0.89 XPA protein N-terminal XPA_N PF01286.18 32 ZNF501-201 - 271 4.3e-09 36.2 43.6 7 9 0.0051 3.1 7.9 0.1 3 13 191 201 189 208 0.82 XPA protein N-terminal XPA_N PF01286.18 32 ZNF501-201 - 271 4.3e-09 36.2 43.6 8 9 0.011 6.5 6.9 0.2 3 13 219 229 218 239 0.76 XPA protein N-terminal XPA_N PF01286.18 32 ZNF501-201 - 271 4.3e-09 36.2 43.6 9 9 0.085 51 4.0 0.0 3 14 247 258 245 264 0.83 XPA protein N-terminal Zn-ribbon_8 PF09723.10 40 ZNF501-201 - 271 1.2e-07 31.7 53.9 1 8 0.00028 0.17 12.1 4.9 7 38 23 61 22 63 0.90 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF501-201 - 271 1.2e-07 31.7 53.9 2 8 0.0012 0.74 10.0 5.0 6 34 78 113 77 115 0.83 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF501-201 - 271 1.2e-07 31.7 53.9 3 8 0.00011 0.064 13.4 5.9 6 36 106 143 105 147 0.91 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF501-201 - 271 1.2e-07 31.7 53.9 4 8 0.0001 0.061 13.4 5.2 6 35 134 170 133 173 0.87 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF501-201 - 271 1.2e-07 31.7 53.9 5 8 5.4e-05 0.032 14.3 5.2 6 36 162 199 161 202 0.89 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF501-201 - 271 1.2e-07 31.7 53.9 6 8 0.0018 1.1 9.5 6.0 6 39 190 230 189 230 0.75 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF501-201 - 271 1.2e-07 31.7 53.9 7 8 0.021 13 6.0 6.5 6 35 218 254 216 257 0.80 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF501-201 - 271 1.2e-07 31.7 53.9 8 8 0.061 36 4.6 0.3 6 16 246 256 244 265 0.86 Zinc ribbon domain # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF501-201.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF501-201.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF501-201.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF501-201.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF501-201.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:07:26 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF501-202.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF501-202.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF501-202.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF501-202.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF501-202.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:07:26 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF501-203.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF501-203.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF501-203.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF501-203.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF501-203.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:07:28 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF501-204.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF501-204.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF501-204.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF501-204.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF501-204.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:07:28 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZNF501-205 - 271 2.6e-73 239.4 63.1 1 10 0.0011 0.64 10.6 0.4 10 25 17 32 8 33 0.79 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF501-205 - 271 2.6e-73 239.4 63.1 2 10 3.1e-09 1.9e-06 28.0 1.4 1 24 36 59 36 61 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF501-205 - 271 2.6e-73 239.4 63.1 3 10 6.7e-12 4e-09 36.5 0.6 1 24 64 87 64 89 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF501-205 - 271 2.6e-73 239.4 63.1 4 10 1.8e-11 1.1e-08 35.1 0.3 2 24 93 115 93 115 0.97 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF501-205 - 271 2.6e-73 239.4 63.1 5 10 4.4e-12 2.6e-09 37.1 0.5 2 25 121 144 120 145 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF501-205 - 271 2.6e-73 239.4 63.1 6 10 6.9e-11 4.1e-08 33.3 0.5 2 25 149 172 149 173 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF501-205 - 271 2.6e-73 239.4 63.1 7 10 2.9e-11 1.7e-08 34.5 0.2 2 25 177 200 177 201 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF501-205 - 271 2.6e-73 239.4 63.1 8 10 2.2e-10 1.3e-07 31.7 1.8 1 25 204 228 204 229 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF501-205 - 271 2.6e-73 239.4 63.1 9 10 4.4e-10 2.6e-07 30.7 2.6 1 26 232 257 232 257 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF501-205 - 271 2.6e-73 239.4 63.1 10 10 0.26 1.6e+02 3.0 0.1 1 12 260 271 260 271 0.87 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZNF501-205 - 271 3.9e-54 178.2 70.8 1 9 2.5e-08 1.5e-05 25.2 1.8 2 23 23 44 22 44 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF501-205 - 271 3.9e-54 178.2 70.8 2 9 3.9e-08 2.3e-05 24.6 2.4 1 23 50 72 50 72 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF501-205 - 271 3.9e-54 178.2 70.8 3 9 7.6e-06 0.0045 17.4 0.2 1 23 78 100 78 100 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF501-205 - 271 3.9e-54 178.2 70.8 4 9 1e-08 6.2e-06 26.4 1.5 1 23 106 128 106 128 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF501-205 - 271 3.9e-54 178.2 70.8 5 9 2.9e-08 1.7e-05 25.0 3.0 1 23 134 156 134 156 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF501-205 - 271 3.9e-54 178.2 70.8 6 9 2.6e-08 1.6e-05 25.1 1.5 1 23 162 184 162 184 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF501-205 - 271 3.9e-54 178.2 70.8 7 9 3.1e-09 1.9e-06 28.0 0.4 1 23 190 212 190 212 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF501-205 - 271 3.9e-54 178.2 70.8 8 9 2.7e-07 0.00016 21.9 3.1 1 23 218 240 218 240 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF501-205 - 271 3.9e-54 178.2 70.8 9 9 2.6e-09 1.6e-06 28.3 1.3 1 23 246 268 246 268 0.98 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZNF501-205 - 271 6.8e-28 95.0 69.3 1 9 0.00014 0.084 13.8 1.6 2 23 23 44 22 45 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF501-205 - 271 6.8e-28 95.0 69.3 2 9 0.0002 0.12 13.3 2.2 1 23 50 72 50 73 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF501-205 - 271 6.8e-28 95.0 69.3 3 9 5.9e-05 0.035 14.9 0.3 1 23 78 100 78 101 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF501-205 - 271 6.8e-28 95.0 69.3 4 9 2.3e-05 0.014 16.2 1.5 1 23 106 128 106 129 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF501-205 - 271 6.8e-28 95.0 69.3 5 9 2.4e-05 0.014 16.2 2.8 1 23 134 156 134 157 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF501-205 - 271 6.8e-28 95.0 69.3 6 9 4.6e-05 0.028 15.3 1.6 1 23 162 184 162 185 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF501-205 - 271 6.8e-28 95.0 69.3 7 9 6.6e-06 0.0039 17.9 0.4 1 23 190 212 190 213 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF501-205 - 271 6.8e-28 95.0 69.3 8 9 6.7e-05 0.04 14.8 2.5 1 23 218 240 218 241 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF501-205 - 271 6.8e-28 95.0 69.3 9 9 2e-05 0.012 16.4 0.9 1 23 246 268 246 269 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF501-205 - 271 6.1e-13 48.4 68.9 1 9 0.0055 3.3 7.8 1.8 3 26 23 46 23 47 0.91 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF501-205 - 271 6.1e-13 48.4 68.9 2 9 0.00021 0.12 12.4 2.0 2 24 50 72 50 75 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF501-205 - 271 6.1e-13 48.4 68.9 3 9 0.00052 0.31 11.1 0.2 2 13 78 89 78 100 0.91 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF501-205 - 271 6.1e-13 48.4 68.9 4 9 0.0021 1.3 9.2 1.3 2 20 106 124 106 130 0.77 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF501-205 - 271 6.1e-13 48.4 68.9 5 9 0.0081 4.8 7.3 4.6 2 12 134 144 134 158 0.78 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF501-205 - 271 6.1e-13 48.4 68.9 6 9 0.0017 1 9.5 1.1 2 12 162 172 162 185 0.88 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF501-205 - 271 6.1e-13 48.4 68.9 7 9 0.00011 0.067 13.2 0.6 2 24 190 212 190 215 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF501-205 - 271 6.1e-13 48.4 68.9 8 9 5.8e-05 0.035 14.1 2.1 2 20 218 236 217 241 0.86 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF501-205 - 271 6.1e-13 48.4 68.9 9 9 0.047 28 4.9 0.5 2 13 246 257 246 269 0.79 C2H2-type zinc finger zf-C2H2_11 PF16622.5 29 ZNF501-205 - 271 1.7e-12 46.8 59.1 1 10 0.93 5.5e+02 0.4 0.1 15 21 3 9 2 14 0.86 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF501-205 - 271 1.7e-12 46.8 59.1 2 10 0.0003 0.18 11.6 1.5 6 26 23 43 21 44 0.95 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF501-205 - 271 1.7e-12 46.8 59.1 3 10 0.00039 0.23 11.2 3.1 7 26 52 71 50 72 0.96 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF501-205 - 271 1.7e-12 46.8 59.1 4 10 0.046 27 4.6 0.0 5 26 78 99 75 100 0.93 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF501-205 - 271 1.7e-12 46.8 59.1 5 10 6.4e-05 0.038 13.7 0.4 5 26 106 127 103 128 0.94 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF501-205 - 271 1.7e-12 46.8 59.1 6 10 1.1e-05 0.0066 16.2 0.9 5 24 134 153 131 154 0.92 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF501-205 - 271 1.7e-12 46.8 59.1 7 10 0.011 6.8 6.5 1.0 5 26 162 183 160 184 0.92 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF501-205 - 271 1.7e-12 46.8 59.1 8 10 0.0013 0.76 9.6 0.0 7 23 192 208 188 211 0.89 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF501-205 - 271 1.7e-12 46.8 59.1 9 10 0.065 39 4.1 0.8 5 26 218 239 216 240 0.94 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF501-205 - 271 1.7e-12 46.8 59.1 10 10 0.096 57 3.6 1.5 6 25 247 266 244 268 0.89 zinc-finger C2H2-type zf-C2H2_jaz PF12171.8 27 ZNF501-205 - 271 2.9e-09 36.9 44.3 1 9 0.023 14 6.1 0.1 3 22 23 42 21 42 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF501-205 - 271 2.9e-09 36.9 44.3 2 9 0.13 78 3.7 0.3 2 22 50 70 49 70 0.89 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF501-205 - 271 2.9e-09 36.9 44.3 3 9 0.0004 0.24 11.7 0.2 2 22 78 98 77 98 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF501-205 - 271 2.9e-09 36.9 44.3 4 9 1.7 1e+03 0.2 0.4 2 11 106 115 105 115 0.87 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF501-205 - 271 2.9e-09 36.9 44.3 5 9 0.023 14 6.1 1.1 2 24 134 156 133 157 0.90 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF501-205 - 271 2.9e-09 36.9 44.3 6 9 0.14 83 3.6 1.1 2 20 162 180 161 182 0.79 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF501-205 - 271 2.9e-09 36.9 44.3 7 9 0.00086 0.51 10.7 0.1 2 24 190 212 189 212 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF501-205 - 271 2.9e-09 36.9 44.3 8 9 0.00033 0.2 12.0 1.7 2 22 218 238 217 238 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF501-205 - 271 2.9e-09 36.9 44.3 9 9 0.0025 1.5 9.2 0.0 2 22 246 266 245 266 0.93 Zinc-finger double-stranded RNA-binding XPA_N PF01286.18 32 ZNF501-205 - 271 4.3e-09 36.2 43.6 1 9 0.028 17 5.6 0.2 2 12 22 32 21 39 0.87 XPA protein N-terminal XPA_N PF01286.18 32 ZNF501-205 - 271 4.3e-09 36.2 43.6 2 9 0.15 87 3.3 0.5 3 12 51 60 49 68 0.83 XPA protein N-terminal XPA_N PF01286.18 32 ZNF501-205 - 271 4.3e-09 36.2 43.6 3 9 0.015 9 6.4 0.5 3 12 79 88 77 90 0.89 XPA protein N-terminal XPA_N PF01286.18 32 ZNF501-205 - 271 4.3e-09 36.2 43.6 4 9 0.0012 0.69 10.0 0.9 3 14 107 118 105 119 0.93 XPA protein N-terminal XPA_N PF01286.18 32 ZNF501-205 - 271 4.3e-09 36.2 43.6 5 9 0.0011 0.63 10.1 0.4 3 14 135 146 133 152 0.88 XPA protein N-terminal XPA_N PF01286.18 32 ZNF501-205 - 271 4.3e-09 36.2 43.6 6 9 0.0019 1.1 9.3 0.7 3 14 163 174 161 180 0.89 XPA protein N-terminal XPA_N PF01286.18 32 ZNF501-205 - 271 4.3e-09 36.2 43.6 7 9 0.0051 3.1 7.9 0.1 3 13 191 201 189 208 0.82 XPA protein N-terminal XPA_N PF01286.18 32 ZNF501-205 - 271 4.3e-09 36.2 43.6 8 9 0.011 6.5 6.9 0.2 3 13 219 229 218 239 0.76 XPA protein N-terminal XPA_N PF01286.18 32 ZNF501-205 - 271 4.3e-09 36.2 43.6 9 9 0.085 51 4.0 0.0 3 14 247 258 245 264 0.83 XPA protein N-terminal Zn-ribbon_8 PF09723.10 40 ZNF501-205 - 271 1.2e-07 31.7 53.9 1 8 0.00028 0.17 12.1 4.9 7 38 23 61 22 63 0.90 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF501-205 - 271 1.2e-07 31.7 53.9 2 8 0.0012 0.74 10.0 5.0 6 34 78 113 77 115 0.83 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF501-205 - 271 1.2e-07 31.7 53.9 3 8 0.00011 0.064 13.4 5.9 6 36 106 143 105 147 0.91 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF501-205 - 271 1.2e-07 31.7 53.9 4 8 0.0001 0.061 13.4 5.2 6 35 134 170 133 173 0.87 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF501-205 - 271 1.2e-07 31.7 53.9 5 8 5.4e-05 0.032 14.3 5.2 6 36 162 199 161 202 0.89 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF501-205 - 271 1.2e-07 31.7 53.9 6 8 0.0018 1.1 9.5 6.0 6 39 190 230 189 230 0.75 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF501-205 - 271 1.2e-07 31.7 53.9 7 8 0.021 13 6.0 6.5 6 35 218 254 216 257 0.80 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF501-205 - 271 1.2e-07 31.7 53.9 8 8 0.061 36 4.6 0.3 6 16 246 256 244 265 0.86 Zinc ribbon domain # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF501-205.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF501-205.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF501-205.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF501-205.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF501-205.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:07:28 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZNF502-201 - 544 2.8e-111 359.5 112.6 1 15 0.00078 0.88 10.1 1.1 10 25 150 165 150 166 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF502-201 - 544 2.8e-111 359.5 112.6 2 15 4.2e-12 4.7e-09 36.3 0.5 1 25 169 193 169 194 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF502-201 - 544 2.8e-111 359.5 112.6 3 15 7.8e-09 8.8e-06 25.9 0.9 2 25 198 221 198 222 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF502-201 - 544 2.8e-111 359.5 112.6 4 15 2.7e-10 3e-07 30.6 0.5 2 26 226 250 226 250 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF502-201 - 544 2.8e-111 359.5 112.6 5 15 1.2e-10 1.4e-07 31.6 1.7 1 25 253 277 253 278 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF502-201 - 544 2.8e-111 359.5 112.6 6 15 7.9e-08 8.8e-05 22.8 1.7 2 25 282 305 281 306 0.90 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF502-201 - 544 2.8e-111 359.5 112.6 7 15 5.9e-12 6.7e-09 35.8 1.1 1 24 309 332 309 334 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF502-201 - 544 2.8e-111 359.5 112.6 8 15 2.2e-11 2.4e-08 34.0 0.7 1 24 337 360 337 360 0.98 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF502-201 - 544 2.8e-111 359.5 112.6 9 15 2.6e-12 3e-09 36.9 0.8 2 25 366 389 365 390 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF502-201 - 544 2.8e-111 359.5 112.6 10 15 9.2e-12 1e-08 35.2 0.4 2 24 394 416 394 418 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF502-201 - 544 2.8e-111 359.5 112.6 11 15 1.6e-11 1.8e-08 34.5 0.5 2 25 422 445 422 446 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF502-201 - 544 2.8e-111 359.5 112.6 12 15 6.7e-13 7.5e-10 38.8 1.8 2 26 450 474 450 474 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF502-201 - 544 2.8e-111 359.5 112.6 13 15 8.2e-09 9.2e-06 25.9 4.3 1 25 477 501 477 502 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF502-201 - 544 2.8e-111 359.5 112.6 14 15 9.8e-11 1.1e-07 31.9 3.5 1 26 505 530 505 530 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF502-201 - 544 2.8e-111 359.5 112.6 15 15 1 1.2e+03 0.3 0.1 3 11 535 543 534 544 0.84 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZNF502-201 - 544 2.2e-70 229.4 138.9 1 14 8.9e-10 1e-06 28.9 1.4 2 23 156 177 155 177 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF502-201 - 544 2.2e-70 229.4 138.9 2 14 2.9e-09 3.3e-06 27.2 0.5 1 23 183 205 183 205 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF502-201 - 544 2.2e-70 229.4 138.9 3 14 8.3e-05 0.093 13.2 3.0 3 23 213 233 211 233 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF502-201 - 544 2.2e-70 229.4 138.9 4 14 8.9e-08 0.0001 22.6 4.4 1 23 239 261 239 261 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF502-201 - 544 2.2e-70 229.4 138.9 5 14 5.5e-08 6.1e-05 23.2 4.2 1 23 267 289 267 289 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF502-201 - 544 2.2e-70 229.4 138.9 6 14 2.8e-07 0.00031 21.0 2.4 1 23 295 317 295 317 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF502-201 - 544 2.2e-70 229.4 138.9 7 14 3.8e-08 4.2e-05 23.8 1.8 1 23 323 345 323 345 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF502-201 - 544 2.2e-70 229.4 138.9 8 14 1.6e-08 1.8e-05 24.9 1.8 1 23 351 373 351 373 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF502-201 - 544 2.2e-70 229.4 138.9 9 14 9.8e-09 1.1e-05 25.6 1.0 1 23 379 401 379 401 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF502-201 - 544 2.2e-70 229.4 138.9 10 14 1e-07 0.00011 22.4 1.5 1 23 407 429 407 429 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF502-201 - 544 2.2e-70 229.4 138.9 11 14 2.2e-08 2.5e-05 24.5 2.4 1 23 435 457 435 457 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF502-201 - 544 2.2e-70 229.4 138.9 12 14 2.6e-08 2.9e-05 24.3 4.1 1 23 463 485 463 485 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF502-201 - 544 2.2e-70 229.4 138.9 13 14 3.2e-06 0.0035 17.7 3.6 1 23 491 513 491 513 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF502-201 - 544 2.2e-70 229.4 138.9 14 14 3.6e-05 0.041 14.4 2.7 1 23 519 541 519 541 0.95 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZNF502-201 - 544 5.3e-38 126.4 123.2 1 14 2.5e-06 0.0027 18.4 1.2 1 23 155 177 155 178 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF502-201 - 544 5.3e-38 126.4 123.2 2 14 2.3e-05 0.026 15.3 0.6 1 23 183 205 183 206 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF502-201 - 544 5.3e-38 126.4 123.2 3 14 4.2e-05 0.047 14.6 2.5 2 23 212 233 211 234 0.91 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF502-201 - 544 5.3e-38 126.4 123.2 4 14 0.00015 0.17 12.8 2.8 1 23 239 261 239 262 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF502-201 - 544 5.3e-38 126.4 123.2 5 14 6.1e-05 0.068 14.0 2.4 1 23 267 289 267 290 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF502-201 - 544 5.3e-38 126.4 123.2 6 14 0.0002 0.22 12.5 1.6 1 23 295 317 295 318 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF502-201 - 544 5.3e-38 126.4 123.2 7 14 2.1e-06 0.0023 18.6 1.4 1 23 323 345 323 346 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF502-201 - 544 5.3e-38 126.4 123.2 8 14 2e-05 0.023 15.5 1.9 1 23 351 373 351 374 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF502-201 - 544 5.3e-38 126.4 123.2 9 14 8.4e-06 0.0095 16.7 0.7 1 23 379 401 379 402 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF502-201 - 544 5.3e-38 126.4 123.2 10 14 0.00014 0.15 13.0 1.5 1 23 407 429 407 430 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF502-201 - 544 5.3e-38 126.4 123.2 11 14 7.8e-06 0.0088 16.8 1.4 1 23 435 457 435 458 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF502-201 - 544 5.3e-38 126.4 123.2 12 14 0.00023 0.26 12.2 3.5 1 23 463 485 463 486 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF502-201 - 544 5.3e-38 126.4 123.2 13 14 9e-05 0.1 13.5 2.8 1 23 491 513 491 514 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF502-201 - 544 5.3e-38 126.4 123.2 14 14 0.0031 3.5 8.7 2.8 1 23 519 541 519 542 0.86 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF502-201 - 544 1.4e-15 56.9 119.9 1 14 7.6e-05 0.086 12.9 1.7 3 24 156 177 155 180 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF502-201 - 544 1.4e-15 56.9 119.9 2 14 0.017 19 5.4 0.6 2 12 183 193 183 194 0.91 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF502-201 - 544 1.4e-15 56.9 119.9 3 14 0.015 17 5.6 0.4 2 12 211 221 211 221 0.91 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF502-201 - 544 1.4e-15 56.9 119.9 4 14 0.0017 2 8.5 2.0 2 20 239 257 239 262 0.77 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF502-201 - 544 1.4e-15 56.9 119.9 5 14 0.26 2.9e+02 1.6 4.6 2 15 267 280 267 289 0.74 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF502-201 - 544 1.4e-15 56.9 119.9 6 14 0.00036 0.41 10.7 1.5 2 24 295 317 295 320 0.90 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF502-201 - 544 1.4e-15 56.9 119.9 7 14 6e-06 0.0067 16.4 1.5 2 24 323 345 323 348 0.85 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF502-201 - 544 1.4e-15 56.9 119.9 8 14 0.0017 1.9 8.6 1.7 2 20 351 369 351 375 0.77 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF502-201 - 544 1.4e-15 56.9 119.9 9 14 0.00031 0.35 10.9 0.7 2 21 379 398 379 403 0.81 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF502-201 - 544 1.4e-15 56.9 119.9 10 14 0.0017 1.9 8.5 0.5 2 11 407 416 407 418 0.96 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF502-201 - 544 1.4e-15 56.9 119.9 11 14 0.00061 0.68 10.0 1.8 2 24 435 457 435 460 0.89 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF502-201 - 544 1.4e-15 56.9 119.9 12 14 0.00019 0.21 11.6 5.3 2 24 463 485 463 488 0.95 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF502-201 - 544 1.4e-15 56.9 119.9 13 14 3.7e-05 0.041 13.9 2.5 2 20 491 509 490 514 0.87 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF502-201 - 544 1.4e-15 56.9 119.9 14 14 0.16 1.8e+02 2.3 2.0 2 20 519 537 519 543 0.76 C2H2-type zinc finger XPA_N PF01286.18 32 ZNF502-201 - 544 2.5e-15 56.2 67.1 1 14 0.0013 1.4 9.0 0.3 3 14 156 167 155 172 0.92 XPA protein N-terminal XPA_N PF01286.18 32 ZNF502-201 - 544 2.5e-15 56.2 67.1 2 14 0.00039 0.43 10.7 0.1 3 14 184 195 182 201 0.77 XPA protein N-terminal XPA_N PF01286.18 32 ZNF502-201 - 544 2.5e-15 56.2 67.1 3 14 0.025 28 4.9 0.7 4 18 213 228 211 229 0.80 XPA protein N-terminal XPA_N PF01286.18 32 ZNF502-201 - 544 2.5e-15 56.2 67.1 4 14 0.063 70 3.6 0.1 3 12 240 249 238 257 0.84 XPA protein N-terminal XPA_N PF01286.18 32 ZNF502-201 - 544 2.5e-15 56.2 67.1 5 14 0.11 1.2e+02 2.9 0.1 3 12 268 277 266 279 0.88 XPA protein N-terminal XPA_N PF01286.18 32 ZNF502-201 - 544 2.5e-15 56.2 67.1 6 14 0.057 64 3.7 0.1 3 12 296 305 294 312 0.88 XPA protein N-terminal XPA_N PF01286.18 32 ZNF502-201 - 544 2.5e-15 56.2 67.1 7 14 0.0013 1.5 8.9 0.7 3 12 324 333 322 335 0.87 XPA protein N-terminal XPA_N PF01286.18 32 ZNF502-201 - 544 2.5e-15 56.2 67.1 8 14 0.00093 1 9.4 1.2 3 14 352 363 350 364 0.93 XPA protein N-terminal XPA_N PF01286.18 32 ZNF502-201 - 544 2.5e-15 56.2 67.1 9 14 0.00056 0.63 10.1 0.1 3 14 380 391 378 396 0.91 XPA protein N-terminal XPA_N PF01286.18 32 ZNF502-201 - 544 2.5e-15 56.2 67.1 10 14 0.003 3.4 7.8 0.7 3 14 408 419 406 422 0.91 XPA protein N-terminal XPA_N PF01286.18 32 ZNF502-201 - 544 2.5e-15 56.2 67.1 11 14 0.015 17 5.5 0.2 3 12 436 445 434 448 0.88 XPA protein N-terminal XPA_N PF01286.18 32 ZNF502-201 - 544 2.5e-15 56.2 67.1 12 14 0.00077 0.86 9.7 0.2 3 14 464 475 462 481 0.90 XPA protein N-terminal XPA_N PF01286.18 32 ZNF502-201 - 544 2.5e-15 56.2 67.1 13 14 0.025 28 4.9 0.1 3 12 492 501 491 511 0.87 XPA protein N-terminal XPA_N PF01286.18 32 ZNF502-201 - 544 2.5e-15 56.2 67.1 14 14 0.013 14 5.8 0.1 3 14 520 531 518 537 0.80 XPA protein N-terminal Zn-ribbon_8 PF09723.10 40 ZNF502-201 - 544 1.3e-14 54.0 83.3 1 13 0.00013 0.14 12.3 4.8 7 38 156 194 154 195 0.86 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF502-201 - 544 1.3e-14 54.0 83.3 2 13 0.00024 0.26 11.4 5.5 6 36 183 220 181 225 0.92 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF502-201 - 544 1.3e-14 54.0 83.3 3 13 0.00027 0.31 11.2 5.8 6 35 211 247 209 251 0.91 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF502-201 - 544 1.3e-14 54.0 83.3 4 13 0.0035 3.9 7.7 0.4 6 16 239 249 238 264 0.80 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF502-201 - 544 1.3e-14 54.0 83.3 5 13 3.4e-07 0.00038 20.5 1.5 6 38 267 306 266 308 0.94 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF502-201 - 544 1.3e-14 54.0 83.3 6 13 0.00021 0.24 11.6 5.3 7 34 324 358 322 363 0.91 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF502-201 - 544 1.3e-14 54.0 83.3 7 13 3.7e-05 0.041 14.0 5.4 6 36 351 388 350 391 0.91 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF502-201 - 544 1.3e-14 54.0 83.3 8 13 5.6e-06 0.0063 16.6 3.0 6 34 379 414 378 420 0.92 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF502-201 - 544 1.3e-14 54.0 83.3 9 13 0.00037 0.41 10.8 4.8 6 34 407 442 406 446 0.90 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF502-201 - 544 1.3e-14 54.0 83.3 10 13 9.7e-05 0.11 12.6 6.1 6 34 435 470 433 475 0.84 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF502-201 - 544 1.3e-14 54.0 83.3 11 13 0.0021 2.4 8.4 0.4 6 20 463 477 462 485 0.79 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF502-201 - 544 1.3e-14 54.0 83.3 12 13 0.059 66 3.7 6.9 6 34 491 526 490 529 0.79 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF502-201 - 544 1.3e-14 54.0 83.3 13 13 0.17 1.9e+02 2.2 0.6 6 15 519 528 518 537 0.82 Zinc ribbon domain zf_UBZ PF18439.1 32 ZNF502-201 - 544 8.4e-10 38.1 80.5 1 14 0.00083 0.93 9.1 0.3 2 21 154 174 153 174 0.91 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF502-201 - 544 8.4e-10 38.1 80.5 2 14 0.00059 0.66 9.6 0.1 3 16 183 196 181 202 0.83 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF502-201 - 544 8.4e-10 38.1 80.5 3 14 0.023 26 4.5 0.6 3 14 211 222 209 230 0.78 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF502-201 - 544 8.4e-10 38.1 80.5 4 14 0.0058 6.5 6.4 0.9 3 21 239 258 237 258 0.93 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF502-201 - 544 8.4e-10 38.1 80.5 5 14 0.0081 9.1 6.0 0.2 3 15 267 279 265 286 0.80 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF502-201 - 544 8.4e-10 38.1 80.5 6 14 0.0008 0.89 9.2 0.4 3 21 295 314 293 314 0.91 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF502-201 - 544 8.4e-10 38.1 80.5 7 14 0.0023 2.5 7.7 0.5 3 21 323 342 321 342 0.83 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF502-201 - 544 8.4e-10 38.1 80.5 8 14 0.022 25 4.6 0.9 3 13 351 361 349 370 0.76 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF502-201 - 544 8.4e-10 38.1 80.5 9 14 0.0074 8.3 6.1 0.2 3 15 379 391 377 398 0.79 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF502-201 - 544 8.4e-10 38.1 80.5 10 14 0.0097 11 5.7 0.6 3 13 407 417 405 423 0.87 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF502-201 - 544 8.4e-10 38.1 80.5 11 14 0.039 44 3.8 0.5 3 15 435 447 433 454 0.78 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF502-201 - 544 8.4e-10 38.1 80.5 12 14 0.00014 0.16 11.6 0.8 3 20 463 481 461 482 0.94 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF502-201 - 544 8.4e-10 38.1 80.5 13 14 0.012 14 5.4 0.5 3 20 491 509 489 509 0.77 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF502-201 - 544 8.4e-10 38.1 80.5 14 14 0.15 1.7e+02 1.9 0.1 3 14 519 530 517 534 0.82 Ubiquitin-Binding Zinc Finger zf-C2H2_11 PF16622.5 29 ZNF502-201 - 544 5e-08 32.6 85.2 1 14 7.7e-05 0.087 12.6 1.1 4 24 154 174 151 176 0.91 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF502-201 - 544 5e-08 32.6 85.2 2 14 0.022 25 4.8 0.3 7 26 185 204 182 205 0.90 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF502-201 - 544 5e-08 32.6 85.2 3 14 1.4 1.6e+03 -1.0 3.0 7 26 213 232 211 233 0.85 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF502-201 - 544 5e-08 32.6 85.2 4 14 0.039 44 4.0 0.3 5 26 239 260 236 261 0.84 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF502-201 - 544 5e-08 32.6 85.2 5 14 0.14 1.6e+02 2.2 0.4 5 26 267 288 264 289 0.81 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF502-201 - 544 5e-08 32.6 85.2 6 14 0.42 4.7e+02 0.7 2.2 7 26 297 316 295 317 0.90 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF502-201 - 544 5e-08 32.6 85.2 7 14 0.001 1.1 9.1 0.1 5 26 323 344 320 345 0.94 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF502-201 - 544 5e-08 32.6 85.2 8 14 8.2e-05 0.092 12.5 0.5 5 26 351 372 348 373 0.94 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF502-201 - 544 5e-08 32.6 85.2 9 14 7.9e-05 0.089 12.6 0.0 5 26 379 400 376 401 0.94 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF502-201 - 544 5e-08 32.6 85.2 10 14 0.0048 5.4 6.9 1.2 5 24 407 426 405 427 0.92 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF502-201 - 544 5e-08 32.6 85.2 11 14 0.00064 0.71 9.7 0.2 5 26 435 456 432 457 0.94 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF502-201 - 544 5e-08 32.6 85.2 12 14 0.00058 0.65 9.8 0.3 5 24 463 482 460 484 0.90 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF502-201 - 544 5e-08 32.6 85.2 13 14 0.86 9.6e+02 -0.3 0.6 5 26 491 512 490 513 0.80 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF502-201 - 544 5e-08 32.6 85.2 14 14 0.16 1.8e+02 2.0 0.4 6 23 520 537 517 540 0.83 zinc-finger C2H2-type zinc_ribbon_15 PF17032.5 86 ZNF502-201 - 544 2e-07 31.7 70.9 1 8 8.9 9.9e+03 -2.6 0.1 32 58 22 46 19 70 0.56 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF502-201 - 544 2e-07 31.7 70.9 2 8 0.0005 0.56 11.0 4.9 33 77 150 194 143 201 0.87 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF502-201 - 544 2e-07 31.7 70.9 3 8 0.0082 9.2 7.1 2.4 25 77 198 250 195 254 0.81 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF502-201 - 544 2e-07 31.7 70.9 4 8 0.00022 0.25 12.1 1.5 31 77 260 306 254 310 0.85 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF502-201 - 544 2e-07 31.7 70.9 5 8 0.0032 3.6 8.4 4.6 32 76 317 361 312 366 0.85 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF502-201 - 544 2e-07 31.7 70.9 6 8 0.00084 0.94 10.3 3.2 29 75 370 416 365 421 0.84 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF502-201 - 544 2e-07 31.7 70.9 7 8 0.00021 0.23 12.2 4.4 22 78 419 475 414 481 0.90 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF502-201 - 544 2e-07 31.7 70.9 8 8 0.0031 3.5 8.4 1.8 31 75 484 528 479 534 0.88 zinc-ribbon family zf-C2H2_jaz PF12171.8 27 ZNF502-201 - 544 6.9e-07 29.4 79.9 1 13 0.00098 1.1 9.6 1.1 2 24 155 177 154 177 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF502-201 - 544 6.9e-07 29.4 79.9 2 13 0.00018 0.2 12.0 0.1 2 22 183 203 182 203 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF502-201 - 544 6.9e-07 29.4 79.9 3 13 0.18 2e+02 2.4 0.6 4 21 213 230 211 231 0.86 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF502-201 - 544 6.9e-07 29.4 79.9 4 13 0.15 1.7e+02 2.7 0.9 2 22 239 259 238 259 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF502-201 - 544 6.9e-07 29.4 79.9 5 13 0.0049 5.4 7.4 0.2 2 22 295 315 294 315 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF502-201 - 544 6.9e-07 29.4 79.9 6 13 7.7e-05 0.087 13.1 0.4 2 22 323 343 322 343 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF502-201 - 544 6.9e-07 29.4 79.9 7 13 0.3 3.3e+02 1.7 0.6 2 11 351 360 350 360 0.88 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF502-201 - 544 6.9e-07 29.4 79.9 8 13 0.089 1e+02 3.4 0.1 2 12 379 389 378 399 0.79 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF502-201 - 544 6.9e-07 29.4 79.9 9 13 0.11 1.2e+02 3.1 1.0 2 24 407 429 406 429 0.84 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF502-201 - 544 6.9e-07 29.4 79.9 10 13 0.082 91 3.5 0.7 2 21 435 454 434 455 0.81 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF502-201 - 544 6.9e-07 29.4 79.9 11 13 0.0013 1.4 9.3 1.1 2 20 463 481 462 485 0.90 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF502-201 - 544 6.9e-07 29.4 79.9 12 13 0.027 30 5.0 1.6 2 21 491 510 490 511 0.81 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF502-201 - 544 6.9e-07 29.4 79.9 13 13 0.0036 4.1 7.8 0.4 2 22 519 539 518 539 0.87 Zinc-finger double-stranded RNA-binding # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF502-201.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF502-201.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF502-201.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF502-201.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF502-201.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:07:29 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF502-202.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF502-202.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF502-202.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF502-202.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF502-202.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:07:29 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZNF502-203 - 544 2.8e-111 359.5 112.6 1 15 0.00078 0.88 10.1 1.1 10 25 150 165 150 166 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF502-203 - 544 2.8e-111 359.5 112.6 2 15 4.2e-12 4.7e-09 36.3 0.5 1 25 169 193 169 194 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF502-203 - 544 2.8e-111 359.5 112.6 3 15 7.8e-09 8.8e-06 25.9 0.9 2 25 198 221 198 222 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF502-203 - 544 2.8e-111 359.5 112.6 4 15 2.7e-10 3e-07 30.6 0.5 2 26 226 250 226 250 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF502-203 - 544 2.8e-111 359.5 112.6 5 15 1.2e-10 1.4e-07 31.6 1.7 1 25 253 277 253 278 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF502-203 - 544 2.8e-111 359.5 112.6 6 15 7.9e-08 8.8e-05 22.8 1.7 2 25 282 305 281 306 0.90 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF502-203 - 544 2.8e-111 359.5 112.6 7 15 5.9e-12 6.7e-09 35.8 1.1 1 24 309 332 309 334 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF502-203 - 544 2.8e-111 359.5 112.6 8 15 2.2e-11 2.4e-08 34.0 0.7 1 24 337 360 337 360 0.98 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF502-203 - 544 2.8e-111 359.5 112.6 9 15 2.6e-12 3e-09 36.9 0.8 2 25 366 389 365 390 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF502-203 - 544 2.8e-111 359.5 112.6 10 15 9.2e-12 1e-08 35.2 0.4 2 24 394 416 394 418 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF502-203 - 544 2.8e-111 359.5 112.6 11 15 1.6e-11 1.8e-08 34.5 0.5 2 25 422 445 422 446 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF502-203 - 544 2.8e-111 359.5 112.6 12 15 6.7e-13 7.5e-10 38.8 1.8 2 26 450 474 450 474 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF502-203 - 544 2.8e-111 359.5 112.6 13 15 8.2e-09 9.2e-06 25.9 4.3 1 25 477 501 477 502 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF502-203 - 544 2.8e-111 359.5 112.6 14 15 9.8e-11 1.1e-07 31.9 3.5 1 26 505 530 505 530 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF502-203 - 544 2.8e-111 359.5 112.6 15 15 1 1.2e+03 0.3 0.1 3 11 535 543 534 544 0.84 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZNF502-203 - 544 2.2e-70 229.4 138.9 1 14 8.9e-10 1e-06 28.9 1.4 2 23 156 177 155 177 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF502-203 - 544 2.2e-70 229.4 138.9 2 14 2.9e-09 3.3e-06 27.2 0.5 1 23 183 205 183 205 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF502-203 - 544 2.2e-70 229.4 138.9 3 14 8.3e-05 0.093 13.2 3.0 3 23 213 233 211 233 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF502-203 - 544 2.2e-70 229.4 138.9 4 14 8.9e-08 0.0001 22.6 4.4 1 23 239 261 239 261 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF502-203 - 544 2.2e-70 229.4 138.9 5 14 5.5e-08 6.1e-05 23.2 4.2 1 23 267 289 267 289 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF502-203 - 544 2.2e-70 229.4 138.9 6 14 2.8e-07 0.00031 21.0 2.4 1 23 295 317 295 317 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF502-203 - 544 2.2e-70 229.4 138.9 7 14 3.8e-08 4.2e-05 23.8 1.8 1 23 323 345 323 345 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF502-203 - 544 2.2e-70 229.4 138.9 8 14 1.6e-08 1.8e-05 24.9 1.8 1 23 351 373 351 373 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF502-203 - 544 2.2e-70 229.4 138.9 9 14 9.8e-09 1.1e-05 25.6 1.0 1 23 379 401 379 401 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF502-203 - 544 2.2e-70 229.4 138.9 10 14 1e-07 0.00011 22.4 1.5 1 23 407 429 407 429 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF502-203 - 544 2.2e-70 229.4 138.9 11 14 2.2e-08 2.5e-05 24.5 2.4 1 23 435 457 435 457 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF502-203 - 544 2.2e-70 229.4 138.9 12 14 2.6e-08 2.9e-05 24.3 4.1 1 23 463 485 463 485 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF502-203 - 544 2.2e-70 229.4 138.9 13 14 3.2e-06 0.0035 17.7 3.6 1 23 491 513 491 513 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF502-203 - 544 2.2e-70 229.4 138.9 14 14 3.6e-05 0.041 14.4 2.7 1 23 519 541 519 541 0.95 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZNF502-203 - 544 5.3e-38 126.4 123.2 1 14 2.5e-06 0.0027 18.4 1.2 1 23 155 177 155 178 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF502-203 - 544 5.3e-38 126.4 123.2 2 14 2.3e-05 0.026 15.3 0.6 1 23 183 205 183 206 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF502-203 - 544 5.3e-38 126.4 123.2 3 14 4.2e-05 0.047 14.6 2.5 2 23 212 233 211 234 0.91 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF502-203 - 544 5.3e-38 126.4 123.2 4 14 0.00015 0.17 12.8 2.8 1 23 239 261 239 262 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF502-203 - 544 5.3e-38 126.4 123.2 5 14 6.1e-05 0.068 14.0 2.4 1 23 267 289 267 290 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF502-203 - 544 5.3e-38 126.4 123.2 6 14 0.0002 0.22 12.5 1.6 1 23 295 317 295 318 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF502-203 - 544 5.3e-38 126.4 123.2 7 14 2.1e-06 0.0023 18.6 1.4 1 23 323 345 323 346 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF502-203 - 544 5.3e-38 126.4 123.2 8 14 2e-05 0.023 15.5 1.9 1 23 351 373 351 374 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF502-203 - 544 5.3e-38 126.4 123.2 9 14 8.4e-06 0.0095 16.7 0.7 1 23 379 401 379 402 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF502-203 - 544 5.3e-38 126.4 123.2 10 14 0.00014 0.15 13.0 1.5 1 23 407 429 407 430 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF502-203 - 544 5.3e-38 126.4 123.2 11 14 7.8e-06 0.0088 16.8 1.4 1 23 435 457 435 458 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF502-203 - 544 5.3e-38 126.4 123.2 12 14 0.00023 0.26 12.2 3.5 1 23 463 485 463 486 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF502-203 - 544 5.3e-38 126.4 123.2 13 14 9e-05 0.1 13.5 2.8 1 23 491 513 491 514 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF502-203 - 544 5.3e-38 126.4 123.2 14 14 0.0031 3.5 8.7 2.8 1 23 519 541 519 542 0.86 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF502-203 - 544 1.4e-15 56.9 119.9 1 14 7.6e-05 0.086 12.9 1.7 3 24 156 177 155 180 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF502-203 - 544 1.4e-15 56.9 119.9 2 14 0.017 19 5.4 0.6 2 12 183 193 183 194 0.91 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF502-203 - 544 1.4e-15 56.9 119.9 3 14 0.015 17 5.6 0.4 2 12 211 221 211 221 0.91 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF502-203 - 544 1.4e-15 56.9 119.9 4 14 0.0017 2 8.5 2.0 2 20 239 257 239 262 0.77 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF502-203 - 544 1.4e-15 56.9 119.9 5 14 0.26 2.9e+02 1.6 4.6 2 15 267 280 267 289 0.74 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF502-203 - 544 1.4e-15 56.9 119.9 6 14 0.00036 0.41 10.7 1.5 2 24 295 317 295 320 0.90 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF502-203 - 544 1.4e-15 56.9 119.9 7 14 6e-06 0.0067 16.4 1.5 2 24 323 345 323 348 0.85 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF502-203 - 544 1.4e-15 56.9 119.9 8 14 0.0017 1.9 8.6 1.7 2 20 351 369 351 375 0.77 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF502-203 - 544 1.4e-15 56.9 119.9 9 14 0.00031 0.35 10.9 0.7 2 21 379 398 379 403 0.81 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF502-203 - 544 1.4e-15 56.9 119.9 10 14 0.0017 1.9 8.5 0.5 2 11 407 416 407 418 0.96 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF502-203 - 544 1.4e-15 56.9 119.9 11 14 0.00061 0.68 10.0 1.8 2 24 435 457 435 460 0.89 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF502-203 - 544 1.4e-15 56.9 119.9 12 14 0.00019 0.21 11.6 5.3 2 24 463 485 463 488 0.95 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF502-203 - 544 1.4e-15 56.9 119.9 13 14 3.7e-05 0.041 13.9 2.5 2 20 491 509 490 514 0.87 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF502-203 - 544 1.4e-15 56.9 119.9 14 14 0.16 1.8e+02 2.3 2.0 2 20 519 537 519 543 0.76 C2H2-type zinc finger XPA_N PF01286.18 32 ZNF502-203 - 544 2.5e-15 56.2 67.1 1 14 0.0013 1.4 9.0 0.3 3 14 156 167 155 172 0.92 XPA protein N-terminal XPA_N PF01286.18 32 ZNF502-203 - 544 2.5e-15 56.2 67.1 2 14 0.00039 0.43 10.7 0.1 3 14 184 195 182 201 0.77 XPA protein N-terminal XPA_N PF01286.18 32 ZNF502-203 - 544 2.5e-15 56.2 67.1 3 14 0.025 28 4.9 0.7 4 18 213 228 211 229 0.80 XPA protein N-terminal XPA_N PF01286.18 32 ZNF502-203 - 544 2.5e-15 56.2 67.1 4 14 0.063 70 3.6 0.1 3 12 240 249 238 257 0.84 XPA protein N-terminal XPA_N PF01286.18 32 ZNF502-203 - 544 2.5e-15 56.2 67.1 5 14 0.11 1.2e+02 2.9 0.1 3 12 268 277 266 279 0.88 XPA protein N-terminal XPA_N PF01286.18 32 ZNF502-203 - 544 2.5e-15 56.2 67.1 6 14 0.057 64 3.7 0.1 3 12 296 305 294 312 0.88 XPA protein N-terminal XPA_N PF01286.18 32 ZNF502-203 - 544 2.5e-15 56.2 67.1 7 14 0.0013 1.5 8.9 0.7 3 12 324 333 322 335 0.87 XPA protein N-terminal XPA_N PF01286.18 32 ZNF502-203 - 544 2.5e-15 56.2 67.1 8 14 0.00093 1 9.4 1.2 3 14 352 363 350 364 0.93 XPA protein N-terminal XPA_N PF01286.18 32 ZNF502-203 - 544 2.5e-15 56.2 67.1 9 14 0.00056 0.63 10.1 0.1 3 14 380 391 378 396 0.91 XPA protein N-terminal XPA_N PF01286.18 32 ZNF502-203 - 544 2.5e-15 56.2 67.1 10 14 0.003 3.4 7.8 0.7 3 14 408 419 406 422 0.91 XPA protein N-terminal XPA_N PF01286.18 32 ZNF502-203 - 544 2.5e-15 56.2 67.1 11 14 0.015 17 5.5 0.2 3 12 436 445 434 448 0.88 XPA protein N-terminal XPA_N PF01286.18 32 ZNF502-203 - 544 2.5e-15 56.2 67.1 12 14 0.00077 0.86 9.7 0.2 3 14 464 475 462 481 0.90 XPA protein N-terminal XPA_N PF01286.18 32 ZNF502-203 - 544 2.5e-15 56.2 67.1 13 14 0.025 28 4.9 0.1 3 12 492 501 491 511 0.87 XPA protein N-terminal XPA_N PF01286.18 32 ZNF502-203 - 544 2.5e-15 56.2 67.1 14 14 0.013 14 5.8 0.1 3 14 520 531 518 537 0.80 XPA protein N-terminal Zn-ribbon_8 PF09723.10 40 ZNF502-203 - 544 1.3e-14 54.0 83.3 1 13 0.00013 0.14 12.3 4.8 7 38 156 194 154 195 0.86 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF502-203 - 544 1.3e-14 54.0 83.3 2 13 0.00024 0.26 11.4 5.5 6 36 183 220 181 225 0.92 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF502-203 - 544 1.3e-14 54.0 83.3 3 13 0.00027 0.31 11.2 5.8 6 35 211 247 209 251 0.91 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF502-203 - 544 1.3e-14 54.0 83.3 4 13 0.0035 3.9 7.7 0.4 6 16 239 249 238 264 0.80 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF502-203 - 544 1.3e-14 54.0 83.3 5 13 3.4e-07 0.00038 20.5 1.5 6 38 267 306 266 308 0.94 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF502-203 - 544 1.3e-14 54.0 83.3 6 13 0.00021 0.24 11.6 5.3 7 34 324 358 322 363 0.91 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF502-203 - 544 1.3e-14 54.0 83.3 7 13 3.7e-05 0.041 14.0 5.4 6 36 351 388 350 391 0.91 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF502-203 - 544 1.3e-14 54.0 83.3 8 13 5.6e-06 0.0063 16.6 3.0 6 34 379 414 378 420 0.92 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF502-203 - 544 1.3e-14 54.0 83.3 9 13 0.00037 0.41 10.8 4.8 6 34 407 442 406 446 0.90 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF502-203 - 544 1.3e-14 54.0 83.3 10 13 9.7e-05 0.11 12.6 6.1 6 34 435 470 433 475 0.84 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF502-203 - 544 1.3e-14 54.0 83.3 11 13 0.0021 2.4 8.4 0.4 6 20 463 477 462 485 0.79 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF502-203 - 544 1.3e-14 54.0 83.3 12 13 0.059 66 3.7 6.9 6 34 491 526 490 529 0.79 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF502-203 - 544 1.3e-14 54.0 83.3 13 13 0.17 1.9e+02 2.2 0.6 6 15 519 528 518 537 0.82 Zinc ribbon domain zf_UBZ PF18439.1 32 ZNF502-203 - 544 8.4e-10 38.1 80.5 1 14 0.00083 0.93 9.1 0.3 2 21 154 174 153 174 0.91 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF502-203 - 544 8.4e-10 38.1 80.5 2 14 0.00059 0.66 9.6 0.1 3 16 183 196 181 202 0.83 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF502-203 - 544 8.4e-10 38.1 80.5 3 14 0.023 26 4.5 0.6 3 14 211 222 209 230 0.78 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF502-203 - 544 8.4e-10 38.1 80.5 4 14 0.0058 6.5 6.4 0.9 3 21 239 258 237 258 0.93 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF502-203 - 544 8.4e-10 38.1 80.5 5 14 0.0081 9.1 6.0 0.2 3 15 267 279 265 286 0.80 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF502-203 - 544 8.4e-10 38.1 80.5 6 14 0.0008 0.89 9.2 0.4 3 21 295 314 293 314 0.91 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF502-203 - 544 8.4e-10 38.1 80.5 7 14 0.0023 2.5 7.7 0.5 3 21 323 342 321 342 0.83 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF502-203 - 544 8.4e-10 38.1 80.5 8 14 0.022 25 4.6 0.9 3 13 351 361 349 370 0.76 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF502-203 - 544 8.4e-10 38.1 80.5 9 14 0.0074 8.3 6.1 0.2 3 15 379 391 377 398 0.79 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF502-203 - 544 8.4e-10 38.1 80.5 10 14 0.0097 11 5.7 0.6 3 13 407 417 405 423 0.87 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF502-203 - 544 8.4e-10 38.1 80.5 11 14 0.039 44 3.8 0.5 3 15 435 447 433 454 0.78 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF502-203 - 544 8.4e-10 38.1 80.5 12 14 0.00014 0.16 11.6 0.8 3 20 463 481 461 482 0.94 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF502-203 - 544 8.4e-10 38.1 80.5 13 14 0.012 14 5.4 0.5 3 20 491 509 489 509 0.77 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF502-203 - 544 8.4e-10 38.1 80.5 14 14 0.15 1.7e+02 1.9 0.1 3 14 519 530 517 534 0.82 Ubiquitin-Binding Zinc Finger zf-C2H2_11 PF16622.5 29 ZNF502-203 - 544 5e-08 32.6 85.2 1 14 7.7e-05 0.087 12.6 1.1 4 24 154 174 151 176 0.91 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF502-203 - 544 5e-08 32.6 85.2 2 14 0.022 25 4.8 0.3 7 26 185 204 182 205 0.90 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF502-203 - 544 5e-08 32.6 85.2 3 14 1.4 1.6e+03 -1.0 3.0 7 26 213 232 211 233 0.85 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF502-203 - 544 5e-08 32.6 85.2 4 14 0.039 44 4.0 0.3 5 26 239 260 236 261 0.84 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF502-203 - 544 5e-08 32.6 85.2 5 14 0.14 1.6e+02 2.2 0.4 5 26 267 288 264 289 0.81 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF502-203 - 544 5e-08 32.6 85.2 6 14 0.42 4.7e+02 0.7 2.2 7 26 297 316 295 317 0.90 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF502-203 - 544 5e-08 32.6 85.2 7 14 0.001 1.1 9.1 0.1 5 26 323 344 320 345 0.94 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF502-203 - 544 5e-08 32.6 85.2 8 14 8.2e-05 0.092 12.5 0.5 5 26 351 372 348 373 0.94 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF502-203 - 544 5e-08 32.6 85.2 9 14 7.9e-05 0.089 12.6 0.0 5 26 379 400 376 401 0.94 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF502-203 - 544 5e-08 32.6 85.2 10 14 0.0048 5.4 6.9 1.2 5 24 407 426 405 427 0.92 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF502-203 - 544 5e-08 32.6 85.2 11 14 0.00064 0.71 9.7 0.2 5 26 435 456 432 457 0.94 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF502-203 - 544 5e-08 32.6 85.2 12 14 0.00058 0.65 9.8 0.3 5 24 463 482 460 484 0.90 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF502-203 - 544 5e-08 32.6 85.2 13 14 0.86 9.6e+02 -0.3 0.6 5 26 491 512 490 513 0.80 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF502-203 - 544 5e-08 32.6 85.2 14 14 0.16 1.8e+02 2.0 0.4 6 23 520 537 517 540 0.83 zinc-finger C2H2-type zinc_ribbon_15 PF17032.5 86 ZNF502-203 - 544 2e-07 31.7 70.9 1 8 8.9 9.9e+03 -2.6 0.1 32 58 22 46 19 70 0.56 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF502-203 - 544 2e-07 31.7 70.9 2 8 0.0005 0.56 11.0 4.9 33 77 150 194 143 201 0.87 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF502-203 - 544 2e-07 31.7 70.9 3 8 0.0082 9.2 7.1 2.4 25 77 198 250 195 254 0.81 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF502-203 - 544 2e-07 31.7 70.9 4 8 0.00022 0.25 12.1 1.5 31 77 260 306 254 310 0.85 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF502-203 - 544 2e-07 31.7 70.9 5 8 0.0032 3.6 8.4 4.6 32 76 317 361 312 366 0.85 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF502-203 - 544 2e-07 31.7 70.9 6 8 0.00084 0.94 10.3 3.2 29 75 370 416 365 421 0.84 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF502-203 - 544 2e-07 31.7 70.9 7 8 0.00021 0.23 12.2 4.4 22 78 419 475 414 481 0.90 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF502-203 - 544 2e-07 31.7 70.9 8 8 0.0031 3.5 8.4 1.8 31 75 484 528 479 534 0.88 zinc-ribbon family zf-C2H2_jaz PF12171.8 27 ZNF502-203 - 544 6.9e-07 29.4 79.9 1 13 0.00098 1.1 9.6 1.1 2 24 155 177 154 177 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF502-203 - 544 6.9e-07 29.4 79.9 2 13 0.00018 0.2 12.0 0.1 2 22 183 203 182 203 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF502-203 - 544 6.9e-07 29.4 79.9 3 13 0.18 2e+02 2.4 0.6 4 21 213 230 211 231 0.86 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF502-203 - 544 6.9e-07 29.4 79.9 4 13 0.15 1.7e+02 2.7 0.9 2 22 239 259 238 259 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF502-203 - 544 6.9e-07 29.4 79.9 5 13 0.0049 5.4 7.4 0.2 2 22 295 315 294 315 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF502-203 - 544 6.9e-07 29.4 79.9 6 13 7.7e-05 0.087 13.1 0.4 2 22 323 343 322 343 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF502-203 - 544 6.9e-07 29.4 79.9 7 13 0.3 3.3e+02 1.7 0.6 2 11 351 360 350 360 0.88 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF502-203 - 544 6.9e-07 29.4 79.9 8 13 0.089 1e+02 3.4 0.1 2 12 379 389 378 399 0.79 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF502-203 - 544 6.9e-07 29.4 79.9 9 13 0.11 1.2e+02 3.1 1.0 2 24 407 429 406 429 0.84 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF502-203 - 544 6.9e-07 29.4 79.9 10 13 0.082 91 3.5 0.7 2 21 435 454 434 455 0.81 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF502-203 - 544 6.9e-07 29.4 79.9 11 13 0.0013 1.4 9.3 1.1 2 20 463 481 462 485 0.90 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF502-203 - 544 6.9e-07 29.4 79.9 12 13 0.027 30 5.0 1.6 2 21 491 510 490 511 0.81 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF502-203 - 544 6.9e-07 29.4 79.9 13 13 0.0036 4.1 7.8 0.4 2 22 519 539 518 539 0.87 Zinc-finger double-stranded RNA-binding # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF502-203.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF502-203.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF502-203.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF502-203.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF502-203.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:07:30 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZNF502-204 - 544 2.8e-111 359.5 112.6 1 15 0.00078 0.88 10.1 1.1 10 25 150 165 150 166 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF502-204 - 544 2.8e-111 359.5 112.6 2 15 4.2e-12 4.7e-09 36.3 0.5 1 25 169 193 169 194 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF502-204 - 544 2.8e-111 359.5 112.6 3 15 7.8e-09 8.8e-06 25.9 0.9 2 25 198 221 198 222 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF502-204 - 544 2.8e-111 359.5 112.6 4 15 2.7e-10 3e-07 30.6 0.5 2 26 226 250 226 250 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF502-204 - 544 2.8e-111 359.5 112.6 5 15 1.2e-10 1.4e-07 31.6 1.7 1 25 253 277 253 278 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF502-204 - 544 2.8e-111 359.5 112.6 6 15 7.9e-08 8.8e-05 22.8 1.7 2 25 282 305 281 306 0.90 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF502-204 - 544 2.8e-111 359.5 112.6 7 15 5.9e-12 6.7e-09 35.8 1.1 1 24 309 332 309 334 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF502-204 - 544 2.8e-111 359.5 112.6 8 15 2.2e-11 2.4e-08 34.0 0.7 1 24 337 360 337 360 0.98 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF502-204 - 544 2.8e-111 359.5 112.6 9 15 2.6e-12 3e-09 36.9 0.8 2 25 366 389 365 390 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF502-204 - 544 2.8e-111 359.5 112.6 10 15 9.2e-12 1e-08 35.2 0.4 2 24 394 416 394 418 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF502-204 - 544 2.8e-111 359.5 112.6 11 15 1.6e-11 1.8e-08 34.5 0.5 2 25 422 445 422 446 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF502-204 - 544 2.8e-111 359.5 112.6 12 15 6.7e-13 7.5e-10 38.8 1.8 2 26 450 474 450 474 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF502-204 - 544 2.8e-111 359.5 112.6 13 15 8.2e-09 9.2e-06 25.9 4.3 1 25 477 501 477 502 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF502-204 - 544 2.8e-111 359.5 112.6 14 15 9.8e-11 1.1e-07 31.9 3.5 1 26 505 530 505 530 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF502-204 - 544 2.8e-111 359.5 112.6 15 15 1 1.2e+03 0.3 0.1 3 11 535 543 534 544 0.84 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZNF502-204 - 544 2.2e-70 229.4 138.9 1 14 8.9e-10 1e-06 28.9 1.4 2 23 156 177 155 177 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF502-204 - 544 2.2e-70 229.4 138.9 2 14 2.9e-09 3.3e-06 27.2 0.5 1 23 183 205 183 205 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF502-204 - 544 2.2e-70 229.4 138.9 3 14 8.3e-05 0.093 13.2 3.0 3 23 213 233 211 233 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF502-204 - 544 2.2e-70 229.4 138.9 4 14 8.9e-08 0.0001 22.6 4.4 1 23 239 261 239 261 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF502-204 - 544 2.2e-70 229.4 138.9 5 14 5.5e-08 6.1e-05 23.2 4.2 1 23 267 289 267 289 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF502-204 - 544 2.2e-70 229.4 138.9 6 14 2.8e-07 0.00031 21.0 2.4 1 23 295 317 295 317 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF502-204 - 544 2.2e-70 229.4 138.9 7 14 3.8e-08 4.2e-05 23.8 1.8 1 23 323 345 323 345 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF502-204 - 544 2.2e-70 229.4 138.9 8 14 1.6e-08 1.8e-05 24.9 1.8 1 23 351 373 351 373 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF502-204 - 544 2.2e-70 229.4 138.9 9 14 9.8e-09 1.1e-05 25.6 1.0 1 23 379 401 379 401 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF502-204 - 544 2.2e-70 229.4 138.9 10 14 1e-07 0.00011 22.4 1.5 1 23 407 429 407 429 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF502-204 - 544 2.2e-70 229.4 138.9 11 14 2.2e-08 2.5e-05 24.5 2.4 1 23 435 457 435 457 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF502-204 - 544 2.2e-70 229.4 138.9 12 14 2.6e-08 2.9e-05 24.3 4.1 1 23 463 485 463 485 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF502-204 - 544 2.2e-70 229.4 138.9 13 14 3.2e-06 0.0035 17.7 3.6 1 23 491 513 491 513 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF502-204 - 544 2.2e-70 229.4 138.9 14 14 3.6e-05 0.041 14.4 2.7 1 23 519 541 519 541 0.95 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZNF502-204 - 544 5.3e-38 126.4 123.2 1 14 2.5e-06 0.0027 18.4 1.2 1 23 155 177 155 178 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF502-204 - 544 5.3e-38 126.4 123.2 2 14 2.3e-05 0.026 15.3 0.6 1 23 183 205 183 206 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF502-204 - 544 5.3e-38 126.4 123.2 3 14 4.2e-05 0.047 14.6 2.5 2 23 212 233 211 234 0.91 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF502-204 - 544 5.3e-38 126.4 123.2 4 14 0.00015 0.17 12.8 2.8 1 23 239 261 239 262 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF502-204 - 544 5.3e-38 126.4 123.2 5 14 6.1e-05 0.068 14.0 2.4 1 23 267 289 267 290 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF502-204 - 544 5.3e-38 126.4 123.2 6 14 0.0002 0.22 12.5 1.6 1 23 295 317 295 318 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF502-204 - 544 5.3e-38 126.4 123.2 7 14 2.1e-06 0.0023 18.6 1.4 1 23 323 345 323 346 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF502-204 - 544 5.3e-38 126.4 123.2 8 14 2e-05 0.023 15.5 1.9 1 23 351 373 351 374 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF502-204 - 544 5.3e-38 126.4 123.2 9 14 8.4e-06 0.0095 16.7 0.7 1 23 379 401 379 402 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF502-204 - 544 5.3e-38 126.4 123.2 10 14 0.00014 0.15 13.0 1.5 1 23 407 429 407 430 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF502-204 - 544 5.3e-38 126.4 123.2 11 14 7.8e-06 0.0088 16.8 1.4 1 23 435 457 435 458 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF502-204 - 544 5.3e-38 126.4 123.2 12 14 0.00023 0.26 12.2 3.5 1 23 463 485 463 486 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF502-204 - 544 5.3e-38 126.4 123.2 13 14 9e-05 0.1 13.5 2.8 1 23 491 513 491 514 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF502-204 - 544 5.3e-38 126.4 123.2 14 14 0.0031 3.5 8.7 2.8 1 23 519 541 519 542 0.86 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF502-204 - 544 1.4e-15 56.9 119.9 1 14 7.6e-05 0.086 12.9 1.7 3 24 156 177 155 180 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF502-204 - 544 1.4e-15 56.9 119.9 2 14 0.017 19 5.4 0.6 2 12 183 193 183 194 0.91 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF502-204 - 544 1.4e-15 56.9 119.9 3 14 0.015 17 5.6 0.4 2 12 211 221 211 221 0.91 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF502-204 - 544 1.4e-15 56.9 119.9 4 14 0.0017 2 8.5 2.0 2 20 239 257 239 262 0.77 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF502-204 - 544 1.4e-15 56.9 119.9 5 14 0.26 2.9e+02 1.6 4.6 2 15 267 280 267 289 0.74 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF502-204 - 544 1.4e-15 56.9 119.9 6 14 0.00036 0.41 10.7 1.5 2 24 295 317 295 320 0.90 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF502-204 - 544 1.4e-15 56.9 119.9 7 14 6e-06 0.0067 16.4 1.5 2 24 323 345 323 348 0.85 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF502-204 - 544 1.4e-15 56.9 119.9 8 14 0.0017 1.9 8.6 1.7 2 20 351 369 351 375 0.77 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF502-204 - 544 1.4e-15 56.9 119.9 9 14 0.00031 0.35 10.9 0.7 2 21 379 398 379 403 0.81 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF502-204 - 544 1.4e-15 56.9 119.9 10 14 0.0017 1.9 8.5 0.5 2 11 407 416 407 418 0.96 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF502-204 - 544 1.4e-15 56.9 119.9 11 14 0.00061 0.68 10.0 1.8 2 24 435 457 435 460 0.89 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF502-204 - 544 1.4e-15 56.9 119.9 12 14 0.00019 0.21 11.6 5.3 2 24 463 485 463 488 0.95 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF502-204 - 544 1.4e-15 56.9 119.9 13 14 3.7e-05 0.041 13.9 2.5 2 20 491 509 490 514 0.87 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF502-204 - 544 1.4e-15 56.9 119.9 14 14 0.16 1.8e+02 2.3 2.0 2 20 519 537 519 543 0.76 C2H2-type zinc finger XPA_N PF01286.18 32 ZNF502-204 - 544 2.5e-15 56.2 67.1 1 14 0.0013 1.4 9.0 0.3 3 14 156 167 155 172 0.92 XPA protein N-terminal XPA_N PF01286.18 32 ZNF502-204 - 544 2.5e-15 56.2 67.1 2 14 0.00039 0.43 10.7 0.1 3 14 184 195 182 201 0.77 XPA protein N-terminal XPA_N PF01286.18 32 ZNF502-204 - 544 2.5e-15 56.2 67.1 3 14 0.025 28 4.9 0.7 4 18 213 228 211 229 0.80 XPA protein N-terminal XPA_N PF01286.18 32 ZNF502-204 - 544 2.5e-15 56.2 67.1 4 14 0.063 70 3.6 0.1 3 12 240 249 238 257 0.84 XPA protein N-terminal XPA_N PF01286.18 32 ZNF502-204 - 544 2.5e-15 56.2 67.1 5 14 0.11 1.2e+02 2.9 0.1 3 12 268 277 266 279 0.88 XPA protein N-terminal XPA_N PF01286.18 32 ZNF502-204 - 544 2.5e-15 56.2 67.1 6 14 0.057 64 3.7 0.1 3 12 296 305 294 312 0.88 XPA protein N-terminal XPA_N PF01286.18 32 ZNF502-204 - 544 2.5e-15 56.2 67.1 7 14 0.0013 1.5 8.9 0.7 3 12 324 333 322 335 0.87 XPA protein N-terminal XPA_N PF01286.18 32 ZNF502-204 - 544 2.5e-15 56.2 67.1 8 14 0.00093 1 9.4 1.2 3 14 352 363 350 364 0.93 XPA protein N-terminal XPA_N PF01286.18 32 ZNF502-204 - 544 2.5e-15 56.2 67.1 9 14 0.00056 0.63 10.1 0.1 3 14 380 391 378 396 0.91 XPA protein N-terminal XPA_N PF01286.18 32 ZNF502-204 - 544 2.5e-15 56.2 67.1 10 14 0.003 3.4 7.8 0.7 3 14 408 419 406 422 0.91 XPA protein N-terminal XPA_N PF01286.18 32 ZNF502-204 - 544 2.5e-15 56.2 67.1 11 14 0.015 17 5.5 0.2 3 12 436 445 434 448 0.88 XPA protein N-terminal XPA_N PF01286.18 32 ZNF502-204 - 544 2.5e-15 56.2 67.1 12 14 0.00077 0.86 9.7 0.2 3 14 464 475 462 481 0.90 XPA protein N-terminal XPA_N PF01286.18 32 ZNF502-204 - 544 2.5e-15 56.2 67.1 13 14 0.025 28 4.9 0.1 3 12 492 501 491 511 0.87 XPA protein N-terminal XPA_N PF01286.18 32 ZNF502-204 - 544 2.5e-15 56.2 67.1 14 14 0.013 14 5.8 0.1 3 14 520 531 518 537 0.80 XPA protein N-terminal Zn-ribbon_8 PF09723.10 40 ZNF502-204 - 544 1.3e-14 54.0 83.3 1 13 0.00013 0.14 12.3 4.8 7 38 156 194 154 195 0.86 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF502-204 - 544 1.3e-14 54.0 83.3 2 13 0.00024 0.26 11.4 5.5 6 36 183 220 181 225 0.92 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF502-204 - 544 1.3e-14 54.0 83.3 3 13 0.00027 0.31 11.2 5.8 6 35 211 247 209 251 0.91 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF502-204 - 544 1.3e-14 54.0 83.3 4 13 0.0035 3.9 7.7 0.4 6 16 239 249 238 264 0.80 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF502-204 - 544 1.3e-14 54.0 83.3 5 13 3.4e-07 0.00038 20.5 1.5 6 38 267 306 266 308 0.94 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF502-204 - 544 1.3e-14 54.0 83.3 6 13 0.00021 0.24 11.6 5.3 7 34 324 358 322 363 0.91 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF502-204 - 544 1.3e-14 54.0 83.3 7 13 3.7e-05 0.041 14.0 5.4 6 36 351 388 350 391 0.91 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF502-204 - 544 1.3e-14 54.0 83.3 8 13 5.6e-06 0.0063 16.6 3.0 6 34 379 414 378 420 0.92 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF502-204 - 544 1.3e-14 54.0 83.3 9 13 0.00037 0.41 10.8 4.8 6 34 407 442 406 446 0.90 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF502-204 - 544 1.3e-14 54.0 83.3 10 13 9.7e-05 0.11 12.6 6.1 6 34 435 470 433 475 0.84 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF502-204 - 544 1.3e-14 54.0 83.3 11 13 0.0021 2.4 8.4 0.4 6 20 463 477 462 485 0.79 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF502-204 - 544 1.3e-14 54.0 83.3 12 13 0.059 66 3.7 6.9 6 34 491 526 490 529 0.79 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF502-204 - 544 1.3e-14 54.0 83.3 13 13 0.17 1.9e+02 2.2 0.6 6 15 519 528 518 537 0.82 Zinc ribbon domain zf_UBZ PF18439.1 32 ZNF502-204 - 544 8.4e-10 38.1 80.5 1 14 0.00083 0.93 9.1 0.3 2 21 154 174 153 174 0.91 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF502-204 - 544 8.4e-10 38.1 80.5 2 14 0.00059 0.66 9.6 0.1 3 16 183 196 181 202 0.83 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF502-204 - 544 8.4e-10 38.1 80.5 3 14 0.023 26 4.5 0.6 3 14 211 222 209 230 0.78 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF502-204 - 544 8.4e-10 38.1 80.5 4 14 0.0058 6.5 6.4 0.9 3 21 239 258 237 258 0.93 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF502-204 - 544 8.4e-10 38.1 80.5 5 14 0.0081 9.1 6.0 0.2 3 15 267 279 265 286 0.80 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF502-204 - 544 8.4e-10 38.1 80.5 6 14 0.0008 0.89 9.2 0.4 3 21 295 314 293 314 0.91 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF502-204 - 544 8.4e-10 38.1 80.5 7 14 0.0023 2.5 7.7 0.5 3 21 323 342 321 342 0.83 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF502-204 - 544 8.4e-10 38.1 80.5 8 14 0.022 25 4.6 0.9 3 13 351 361 349 370 0.76 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF502-204 - 544 8.4e-10 38.1 80.5 9 14 0.0074 8.3 6.1 0.2 3 15 379 391 377 398 0.79 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF502-204 - 544 8.4e-10 38.1 80.5 10 14 0.0097 11 5.7 0.6 3 13 407 417 405 423 0.87 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF502-204 - 544 8.4e-10 38.1 80.5 11 14 0.039 44 3.8 0.5 3 15 435 447 433 454 0.78 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF502-204 - 544 8.4e-10 38.1 80.5 12 14 0.00014 0.16 11.6 0.8 3 20 463 481 461 482 0.94 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF502-204 - 544 8.4e-10 38.1 80.5 13 14 0.012 14 5.4 0.5 3 20 491 509 489 509 0.77 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF502-204 - 544 8.4e-10 38.1 80.5 14 14 0.15 1.7e+02 1.9 0.1 3 14 519 530 517 534 0.82 Ubiquitin-Binding Zinc Finger zf-C2H2_11 PF16622.5 29 ZNF502-204 - 544 5e-08 32.6 85.2 1 14 7.7e-05 0.087 12.6 1.1 4 24 154 174 151 176 0.91 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF502-204 - 544 5e-08 32.6 85.2 2 14 0.022 25 4.8 0.3 7 26 185 204 182 205 0.90 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF502-204 - 544 5e-08 32.6 85.2 3 14 1.4 1.6e+03 -1.0 3.0 7 26 213 232 211 233 0.85 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF502-204 - 544 5e-08 32.6 85.2 4 14 0.039 44 4.0 0.3 5 26 239 260 236 261 0.84 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF502-204 - 544 5e-08 32.6 85.2 5 14 0.14 1.6e+02 2.2 0.4 5 26 267 288 264 289 0.81 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF502-204 - 544 5e-08 32.6 85.2 6 14 0.42 4.7e+02 0.7 2.2 7 26 297 316 295 317 0.90 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF502-204 - 544 5e-08 32.6 85.2 7 14 0.001 1.1 9.1 0.1 5 26 323 344 320 345 0.94 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF502-204 - 544 5e-08 32.6 85.2 8 14 8.2e-05 0.092 12.5 0.5 5 26 351 372 348 373 0.94 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF502-204 - 544 5e-08 32.6 85.2 9 14 7.9e-05 0.089 12.6 0.0 5 26 379 400 376 401 0.94 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF502-204 - 544 5e-08 32.6 85.2 10 14 0.0048 5.4 6.9 1.2 5 24 407 426 405 427 0.92 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF502-204 - 544 5e-08 32.6 85.2 11 14 0.00064 0.71 9.7 0.2 5 26 435 456 432 457 0.94 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF502-204 - 544 5e-08 32.6 85.2 12 14 0.00058 0.65 9.8 0.3 5 24 463 482 460 484 0.90 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF502-204 - 544 5e-08 32.6 85.2 13 14 0.86 9.6e+02 -0.3 0.6 5 26 491 512 490 513 0.80 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF502-204 - 544 5e-08 32.6 85.2 14 14 0.16 1.8e+02 2.0 0.4 6 23 520 537 517 540 0.83 zinc-finger C2H2-type zinc_ribbon_15 PF17032.5 86 ZNF502-204 - 544 2e-07 31.7 70.9 1 8 8.9 9.9e+03 -2.6 0.1 32 58 22 46 19 70 0.56 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF502-204 - 544 2e-07 31.7 70.9 2 8 0.0005 0.56 11.0 4.9 33 77 150 194 143 201 0.87 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF502-204 - 544 2e-07 31.7 70.9 3 8 0.0082 9.2 7.1 2.4 25 77 198 250 195 254 0.81 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF502-204 - 544 2e-07 31.7 70.9 4 8 0.00022 0.25 12.1 1.5 31 77 260 306 254 310 0.85 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF502-204 - 544 2e-07 31.7 70.9 5 8 0.0032 3.6 8.4 4.6 32 76 317 361 312 366 0.85 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF502-204 - 544 2e-07 31.7 70.9 6 8 0.00084 0.94 10.3 3.2 29 75 370 416 365 421 0.84 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF502-204 - 544 2e-07 31.7 70.9 7 8 0.00021 0.23 12.2 4.4 22 78 419 475 414 481 0.90 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF502-204 - 544 2e-07 31.7 70.9 8 8 0.0031 3.5 8.4 1.8 31 75 484 528 479 534 0.88 zinc-ribbon family zf-C2H2_jaz PF12171.8 27 ZNF502-204 - 544 6.9e-07 29.4 79.9 1 13 0.00098 1.1 9.6 1.1 2 24 155 177 154 177 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF502-204 - 544 6.9e-07 29.4 79.9 2 13 0.00018 0.2 12.0 0.1 2 22 183 203 182 203 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF502-204 - 544 6.9e-07 29.4 79.9 3 13 0.18 2e+02 2.4 0.6 4 21 213 230 211 231 0.86 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF502-204 - 544 6.9e-07 29.4 79.9 4 13 0.15 1.7e+02 2.7 0.9 2 22 239 259 238 259 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF502-204 - 544 6.9e-07 29.4 79.9 5 13 0.0049 5.4 7.4 0.2 2 22 295 315 294 315 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF502-204 - 544 6.9e-07 29.4 79.9 6 13 7.7e-05 0.087 13.1 0.4 2 22 323 343 322 343 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF502-204 - 544 6.9e-07 29.4 79.9 7 13 0.3 3.3e+02 1.7 0.6 2 11 351 360 350 360 0.88 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF502-204 - 544 6.9e-07 29.4 79.9 8 13 0.089 1e+02 3.4 0.1 2 12 379 389 378 399 0.79 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF502-204 - 544 6.9e-07 29.4 79.9 9 13 0.11 1.2e+02 3.1 1.0 2 24 407 429 406 429 0.84 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF502-204 - 544 6.9e-07 29.4 79.9 10 13 0.082 91 3.5 0.7 2 21 435 454 434 455 0.81 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF502-204 - 544 6.9e-07 29.4 79.9 11 13 0.0013 1.4 9.3 1.1 2 20 463 481 462 485 0.90 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF502-204 - 544 6.9e-07 29.4 79.9 12 13 0.027 30 5.0 1.6 2 21 491 510 490 511 0.81 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF502-204 - 544 6.9e-07 29.4 79.9 13 13 0.0036 4.1 7.8 0.4 2 22 519 539 518 539 0.87 Zinc-finger double-stranded RNA-binding # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF502-204.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF502-204.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF502-204.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF502-204.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF502-204.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:07:30 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- nlz1 PF12402.8 58 ZNF503-201 - 646 1.4e-28 99.1 10.8 1 6 3 1.8e+04 -3.8 3.3 26 55 27 49 24 53 0.65 NocA-like zinc-finger protein 1 nlz1 PF12402.8 58 ZNF503-201 - 646 1.4e-28 99.1 10.8 2 6 0.92 5.5e+03 -2.1 1.5 26 54 105 132 97 162 0.68 NocA-like zinc-finger protein 1 nlz1 PF12402.8 58 ZNF503-201 - 646 1.4e-28 99.1 10.8 3 6 3 1.8e+04 -4.8 1.9 45 55 313 323 306 337 0.65 NocA-like zinc-finger protein 1 nlz1 PF12402.8 58 ZNF503-201 - 646 1.4e-28 99.1 10.8 4 6 2.3e-32 1.4e-28 99.1 10.8 1 58 355 415 355 415 0.98 NocA-like zinc-finger protein 1 nlz1 PF12402.8 58 ZNF503-201 - 646 1.4e-28 99.1 10.8 5 6 2.6 1.6e+04 -3.6 0.3 33 43 439 448 433 458 0.50 NocA-like zinc-finger protein 1 nlz1 PF12402.8 58 ZNF503-201 - 646 1.4e-28 99.1 10.8 6 6 0.76 4.5e+03 -1.8 0.7 32 47 558 572 554 586 0.61 NocA-like zinc-finger protein 1 # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF503-201.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF503-201.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF503-201.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF503-201.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF503-201.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:07:31 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF503-202.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF503-202.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF503-202.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF503-202.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF503-202.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:07:31 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF503-203.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF503-203.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF503-203.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF503-203.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF503-203.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:07:31 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZNF506-201 - 444 6.3e-65 212.9 72.3 1 11 3.3 2.2e+03 -0.7 0.0 10 18 140 148 139 150 0.81 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF506-201 - 444 6.3e-65 212.9 72.3 2 11 0.00092 0.63 10.6 0.2 3 25 161 183 159 184 0.88 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF506-201 - 444 6.3e-65 212.9 72.3 3 11 4.1e-05 0.029 14.8 0.9 11 26 197 212 190 212 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF506-201 - 444 6.3e-65 212.9 72.3 4 11 1.2e-10 8.4e-08 32.3 3.7 1 26 215 240 215 240 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF506-201 - 444 6.3e-65 212.9 72.3 5 11 1.7e-10 1.2e-07 31.8 1.6 1 26 243 268 243 268 0.97 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF506-201 - 444 6.3e-65 212.9 72.3 6 11 1.1e-10 7.5e-08 32.5 1.6 4 25 274 295 272 296 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF506-201 - 444 6.3e-65 212.9 72.3 7 11 2.5e-11 1.7e-08 34.5 0.7 2 25 300 323 299 324 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF506-201 - 444 6.3e-65 212.9 72.3 8 11 7.3e-10 5e-07 29.9 0.7 1 25 327 351 327 351 0.97 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF506-201 - 444 6.3e-65 212.9 72.3 9 11 2.8e-11 1.9e-08 34.3 1.2 1 25 355 379 355 380 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF506-201 - 444 6.3e-65 212.9 72.3 10 11 1.4e-10 9.6e-08 32.1 0.6 2 25 384 407 383 407 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF506-201 - 444 6.3e-65 212.9 72.3 11 11 0.045 31 5.2 0.1 1 14 411 424 411 428 0.90 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZNF506-201 - 444 3.5e-42 140.5 58.9 1 8 4e-08 2.7e-05 24.4 2.5 1 23 201 223 201 223 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF506-201 - 444 3.5e-42 140.5 58.9 2 8 6.8e-07 0.00047 20.5 1.7 1 23 229 251 229 251 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF506-201 - 444 3.5e-42 140.5 58.9 3 8 4.5e-07 0.00031 21.0 1.9 1 23 257 279 257 279 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF506-201 - 444 3.5e-42 140.5 58.9 4 8 8.4e-08 5.8e-05 23.3 0.3 1 23 285 307 285 307 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF506-201 - 444 3.5e-42 140.5 58.9 5 8 4e-10 2.8e-07 30.6 1.1 1 23 313 335 313 335 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF506-201 - 444 3.5e-42 140.5 58.9 6 8 3.4e-06 0.0024 18.3 1.4 1 23 341 363 341 363 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF506-201 - 444 3.5e-42 140.5 58.9 7 8 7.6e-07 0.00052 20.3 0.2 1 23 369 391 369 391 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF506-201 - 444 3.5e-42 140.5 58.9 8 8 1.3e-06 0.00087 19.6 0.3 1 23 397 419 397 419 0.98 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZNF506-201 - 444 4e-25 86.3 52.2 1 8 4.4e-05 0.03 15.1 2.0 1 23 201 223 201 224 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF506-201 - 444 4e-25 86.3 52.2 2 8 0.00016 0.11 13.4 1.4 1 23 229 251 229 252 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF506-201 - 444 4e-25 86.3 52.2 3 8 0.00032 0.22 12.5 1.4 1 23 257 279 257 280 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF506-201 - 444 4e-25 86.3 52.2 4 8 2e-05 0.014 16.2 0.3 1 23 285 307 285 308 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF506-201 - 444 4e-25 86.3 52.2 5 8 7.1e-06 0.0049 17.6 0.8 1 23 313 335 313 336 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF506-201 - 444 4e-25 86.3 52.2 6 8 6.8e-06 0.0047 17.7 1.2 1 23 341 363 341 364 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF506-201 - 444 4e-25 86.3 52.2 7 8 0.00041 0.28 12.1 0.3 1 23 369 391 369 392 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF506-201 - 444 4e-25 86.3 52.2 8 8 8e-05 0.055 14.3 0.3 1 23 397 419 397 420 0.91 C2H2-type zinc finger KRAB PF01352.27 42 ZNF506-201 - 444 3.2e-23 81.1 0.3 1 2 1.1e-25 7.9e-23 79.8 0.0 2 42 4 44 3 44 0.97 KRAB box KRAB PF01352.27 42 ZNF506-201 - 444 3.2e-23 81.1 0.3 2 2 5.6 3.9e+03 -2.4 0.0 17 26 135 144 134 146 0.84 KRAB box zf-C2H2_6 PF13912.6 27 ZNF506-201 - 444 2.6e-19 68.7 60.1 1 8 0.0025 1.7 8.7 3.6 1 24 200 223 200 226 0.92 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF506-201 - 444 2.6e-19 68.7 60.1 2 8 0.002 1.4 9.0 2.4 2 24 229 251 229 254 0.92 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF506-201 - 444 2.6e-19 68.7 60.1 3 8 0.0024 1.7 8.8 1.1 2 24 257 279 257 282 0.88 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF506-201 - 444 2.6e-19 68.7 60.1 4 8 0.0028 1.9 8.6 0.4 2 20 285 303 285 307 0.79 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF506-201 - 444 2.6e-19 68.7 60.1 5 8 6.5e-06 0.0045 17.0 1.3 2 24 313 335 313 337 0.95 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF506-201 - 444 2.6e-19 68.7 60.1 6 8 5.6e-08 3.8e-05 23.5 1.9 2 24 341 363 341 366 0.95 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF506-201 - 444 2.6e-19 68.7 60.1 7 8 0.00017 0.12 12.5 0.4 2 24 369 391 369 394 0.92 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF506-201 - 444 2.6e-19 68.7 60.1 8 8 8.1e-06 0.0056 16.7 0.7 2 24 397 419 397 422 0.94 C2H2-type zinc finger zf-C2H2_11 PF16622.5 29 ZNF506-201 - 444 3.6e-16 58.6 17.4 1 8 0.15 1e+02 2.8 0.3 5 15 201 211 199 222 0.74 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF506-201 - 444 3.6e-16 58.6 17.4 2 8 0.052 36 4.2 0.2 5 26 229 250 226 251 0.82 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF506-201 - 444 3.6e-16 58.6 17.4 3 8 0.02 14 5.6 0.1 5 14 257 266 254 278 0.80 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF506-201 - 444 3.6e-16 58.6 17.4 4 8 0.0005 0.34 10.7 0.0 5 26 285 306 282 307 0.91 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF506-201 - 444 3.6e-16 58.6 17.4 5 8 0.0046 3.2 7.6 0.0 5 26 313 334 310 335 0.92 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF506-201 - 444 3.6e-16 58.6 17.4 6 8 7.1e-05 0.049 13.4 0.0 5 24 341 360 340 362 0.93 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF506-201 - 444 3.6e-16 58.6 17.4 7 8 0.0033 2.2 8.1 0.0 5 26 369 390 366 391 0.87 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF506-201 - 444 3.6e-16 58.6 17.4 8 8 0.00071 0.49 10.2 0.0 5 26 397 418 394 419 0.92 zinc-finger C2H2-type XPA_N PF01286.18 32 ZNF506-201 - 444 2e-12 46.9 32.0 1 9 3.6 2.5e+03 -1.4 0.0 3 15 174 186 174 192 0.80 XPA protein N-terminal XPA_N PF01286.18 32 ZNF506-201 - 444 2e-12 46.9 32.0 2 9 0.0062 4.3 7.5 0.2 3 15 202 214 200 220 0.81 XPA protein N-terminal XPA_N PF01286.18 32 ZNF506-201 - 444 2e-12 46.9 32.0 3 9 0.013 8.9 6.4 0.6 3 14 230 241 228 247 0.86 XPA protein N-terminal XPA_N PF01286.18 32 ZNF506-201 - 444 2e-12 46.9 32.0 4 9 0.019 13 5.9 0.1 3 11 258 266 256 268 0.88 XPA protein N-terminal XPA_N PF01286.18 32 ZNF506-201 - 444 2e-12 46.9 32.0 5 9 0.0021 1.4 9.0 0.1 3 14 286 297 284 303 0.87 XPA protein N-terminal XPA_N PF01286.18 32 ZNF506-201 - 444 2e-12 46.9 32.0 6 9 0.0012 0.83 9.8 0.2 3 14 314 325 312 330 0.89 XPA protein N-terminal XPA_N PF01286.18 32 ZNF506-201 - 444 2e-12 46.9 32.0 7 9 0.0026 1.8 8.7 0.1 3 12 342 351 340 357 0.91 XPA protein N-terminal XPA_N PF01286.18 32 ZNF506-201 - 444 2e-12 46.9 32.0 8 9 0.004 2.8 8.1 0.2 3 12 370 379 368 384 0.91 XPA protein N-terminal XPA_N PF01286.18 32 ZNF506-201 - 444 2e-12 46.9 32.0 9 9 0.0025 1.7 8.7 0.1 3 14 398 409 396 414 0.86 XPA protein N-terminal Zn-ribbon_8 PF09723.10 40 ZNF506-201 - 444 4.9e-12 45.7 40.0 1 8 0.0021 1.4 9.1 7.6 6 36 201 238 200 242 0.84 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF506-201 - 444 4.9e-12 45.7 40.0 2 8 0.029 20 5.4 1.2 6 16 229 239 228 248 0.84 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF506-201 - 444 4.9e-12 45.7 40.0 3 8 9.5e-05 0.065 13.4 3.7 6 34 257 292 256 295 0.86 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF506-201 - 444 4.9e-12 45.7 40.0 4 8 0.016 11 6.3 0.3 6 15 285 294 284 306 0.88 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF506-201 - 444 4.9e-12 45.7 40.0 5 8 0.0015 1 9.5 0.1 6 18 313 325 311 336 0.83 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF506-201 - 444 4.9e-12 45.7 40.0 6 8 0.0014 0.98 9.6 0.1 6 18 341 353 340 365 0.78 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF506-201 - 444 4.9e-12 45.7 40.0 7 8 9.4e-05 0.065 13.4 5.4 6 34 369 404 368 405 0.76 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF506-201 - 444 4.9e-12 45.7 40.0 8 8 0.0025 1.7 8.8 0.4 6 16 397 407 396 425 0.77 Zinc ribbon domain zf_UBZ PF18439.1 32 ZNF506-201 - 444 4.1e-11 42.3 35.0 1 9 0.46 3.2e+02 1.0 0.0 24 29 80 85 80 88 0.87 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF506-201 - 444 4.1e-11 42.3 35.0 2 9 0.0039 2.7 7.7 0.4 2 20 200 219 199 220 0.78 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF506-201 - 444 4.1e-11 42.3 35.0 3 9 0.006 4.1 7.1 1.0 3 20 229 247 227 248 0.85 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF506-201 - 444 4.1e-11 42.3 35.0 4 9 0.033 23 4.7 0.1 3 15 257 269 255 276 0.79 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF506-201 - 444 4.1e-11 42.3 35.0 5 9 0.0015 1 9.0 0.1 3 20 285 303 283 304 0.81 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF506-201 - 444 4.1e-11 42.3 35.0 6 9 0.0036 2.5 7.8 0.1 3 16 313 327 311 332 0.77 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF506-201 - 444 4.1e-11 42.3 35.0 7 9 0.0063 4.3 7.0 0.1 3 12 341 350 340 355 0.91 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF506-201 - 444 4.1e-11 42.3 35.0 8 9 0.0004 0.28 10.8 0.1 3 20 369 387 367 388 0.92 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF506-201 - 444 4.1e-11 42.3 35.0 9 9 0.0061 4.2 7.0 0.1 3 13 397 407 395 416 0.79 Ubiquitin-Binding Zinc Finger zf-trcl PF13451.6 48 ZNF506-201 - 444 5.3e-08 32.6 31.7 1 8 0.19 1.3e+02 2.6 0.9 3 44 199 211 189 215 0.62 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF506-201 - 444 5.3e-08 32.6 31.7 2 8 2.3 1.6e+03 -0.9 7.8 3 46 199 241 197 243 0.63 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF506-201 - 444 5.3e-08 32.6 31.7 3 8 0.027 19 5.3 0.1 3 14 255 266 253 271 0.70 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF506-201 - 444 5.3e-08 32.6 31.7 4 8 0.021 15 5.6 0.1 3 15 283 295 281 299 0.88 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF506-201 - 444 5.3e-08 32.6 31.7 5 8 0.032 22 5.0 0.1 3 14 311 322 309 326 0.87 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF506-201 - 444 5.3e-08 32.6 31.7 6 8 0.00028 0.19 11.6 0.1 2 18 338 354 337 359 0.90 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF506-201 - 444 5.3e-08 32.6 31.7 7 8 0.013 8.7 6.3 0.2 3 15 367 379 365 383 0.87 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF506-201 - 444 5.3e-08 32.6 31.7 8 8 0.0012 0.86 9.6 0.0 3 18 395 410 393 415 0.89 Probable zinc-ribbon domain # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF506-201.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF506-201.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF506-201.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF506-201.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF506-201.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:07:32 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF506-202.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF506-202.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF506-202.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF506-202.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF506-202.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:07:32 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF506-203.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF506-203.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF506-203.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF506-203.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF506-203.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:07:33 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- KRAB PF01352.27 42 ZNF506-204 - 78 2.6e-24 84.6 0.0 1 1 1.9e-28 3.4e-24 84.2 0.0 2 42 4 44 3 44 0.97 KRAB box # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF506-204.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF506-204.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF506-204.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF506-204.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF506-204.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:07:33 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- KRAB PF01352.27 42 ZNF506-205 - 137 8.1e-24 83.0 0.0 1 1 6.8e-28 1.2e-23 82.4 0.0 2 42 4 44 3 44 0.97 KRAB box # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF506-205.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF506-205.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF506-205.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF506-205.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF506-205.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:07:33 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- KRAB PF01352.27 42 ZNF506-206 - 92 3.8e-24 84.1 0.0 1 1 2.9e-28 5.2e-24 83.6 0.0 2 42 4 44 3 44 0.97 KRAB box # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF506-206.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF506-206.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF506-206.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF506-206.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF506-206.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:07:34 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- KRAB PF01352.27 42 ZNF506-207 - 108 5.7e-24 83.5 0.0 1 1 4.2e-28 7.4e-24 83.1 0.0 2 42 4 44 3 44 0.97 KRAB box # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF506-207.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF506-207.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF506-207.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF506-207.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF506-207.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:07:34 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF506-208.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF506-208.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF506-208.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF506-208.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF506-208.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:07:34 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF506-209.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF506-209.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF506-209.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF506-209.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF506-209.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:07:35 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF506-210.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF506-210.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF506-210.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF506-210.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF506-210.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:07:35 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZNF506-211 - 444 6.3e-65 212.9 72.3 1 11 3.3 2.2e+03 -0.7 0.0 10 18 140 148 139 150 0.81 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF506-211 - 444 6.3e-65 212.9 72.3 2 11 0.00092 0.63 10.6 0.2 3 25 161 183 159 184 0.88 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF506-211 - 444 6.3e-65 212.9 72.3 3 11 4.1e-05 0.029 14.8 0.9 11 26 197 212 190 212 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF506-211 - 444 6.3e-65 212.9 72.3 4 11 1.2e-10 8.4e-08 32.3 3.7 1 26 215 240 215 240 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF506-211 - 444 6.3e-65 212.9 72.3 5 11 1.7e-10 1.2e-07 31.8 1.6 1 26 243 268 243 268 0.97 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF506-211 - 444 6.3e-65 212.9 72.3 6 11 1.1e-10 7.5e-08 32.5 1.6 4 25 274 295 272 296 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF506-211 - 444 6.3e-65 212.9 72.3 7 11 2.5e-11 1.7e-08 34.5 0.7 2 25 300 323 299 324 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF506-211 - 444 6.3e-65 212.9 72.3 8 11 7.3e-10 5e-07 29.9 0.7 1 25 327 351 327 351 0.97 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF506-211 - 444 6.3e-65 212.9 72.3 9 11 2.8e-11 1.9e-08 34.3 1.2 1 25 355 379 355 380 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF506-211 - 444 6.3e-65 212.9 72.3 10 11 1.4e-10 9.6e-08 32.1 0.6 2 25 384 407 383 407 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF506-211 - 444 6.3e-65 212.9 72.3 11 11 0.045 31 5.2 0.1 1 14 411 424 411 428 0.90 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZNF506-211 - 444 3.5e-42 140.5 58.9 1 8 4e-08 2.7e-05 24.4 2.5 1 23 201 223 201 223 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF506-211 - 444 3.5e-42 140.5 58.9 2 8 6.8e-07 0.00047 20.5 1.7 1 23 229 251 229 251 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF506-211 - 444 3.5e-42 140.5 58.9 3 8 4.5e-07 0.00031 21.0 1.9 1 23 257 279 257 279 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF506-211 - 444 3.5e-42 140.5 58.9 4 8 8.4e-08 5.8e-05 23.3 0.3 1 23 285 307 285 307 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF506-211 - 444 3.5e-42 140.5 58.9 5 8 4e-10 2.8e-07 30.6 1.1 1 23 313 335 313 335 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF506-211 - 444 3.5e-42 140.5 58.9 6 8 3.4e-06 0.0024 18.3 1.4 1 23 341 363 341 363 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF506-211 - 444 3.5e-42 140.5 58.9 7 8 7.6e-07 0.00052 20.3 0.2 1 23 369 391 369 391 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF506-211 - 444 3.5e-42 140.5 58.9 8 8 1.3e-06 0.00087 19.6 0.3 1 23 397 419 397 419 0.98 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZNF506-211 - 444 4e-25 86.3 52.2 1 8 4.4e-05 0.03 15.1 2.0 1 23 201 223 201 224 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF506-211 - 444 4e-25 86.3 52.2 2 8 0.00016 0.11 13.4 1.4 1 23 229 251 229 252 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF506-211 - 444 4e-25 86.3 52.2 3 8 0.00032 0.22 12.5 1.4 1 23 257 279 257 280 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF506-211 - 444 4e-25 86.3 52.2 4 8 2e-05 0.014 16.2 0.3 1 23 285 307 285 308 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF506-211 - 444 4e-25 86.3 52.2 5 8 7.1e-06 0.0049 17.6 0.8 1 23 313 335 313 336 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF506-211 - 444 4e-25 86.3 52.2 6 8 6.8e-06 0.0047 17.7 1.2 1 23 341 363 341 364 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF506-211 - 444 4e-25 86.3 52.2 7 8 0.00041 0.28 12.1 0.3 1 23 369 391 369 392 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF506-211 - 444 4e-25 86.3 52.2 8 8 8e-05 0.055 14.3 0.3 1 23 397 419 397 420 0.91 C2H2-type zinc finger KRAB PF01352.27 42 ZNF506-211 - 444 3.2e-23 81.1 0.3 1 2 1.1e-25 7.9e-23 79.8 0.0 2 42 4 44 3 44 0.97 KRAB box KRAB PF01352.27 42 ZNF506-211 - 444 3.2e-23 81.1 0.3 2 2 5.6 3.9e+03 -2.4 0.0 17 26 135 144 134 146 0.84 KRAB box zf-C2H2_6 PF13912.6 27 ZNF506-211 - 444 2.6e-19 68.7 60.1 1 8 0.0025 1.7 8.7 3.6 1 24 200 223 200 226 0.92 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF506-211 - 444 2.6e-19 68.7 60.1 2 8 0.002 1.4 9.0 2.4 2 24 229 251 229 254 0.92 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF506-211 - 444 2.6e-19 68.7 60.1 3 8 0.0024 1.7 8.8 1.1 2 24 257 279 257 282 0.88 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF506-211 - 444 2.6e-19 68.7 60.1 4 8 0.0028 1.9 8.6 0.4 2 20 285 303 285 307 0.79 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF506-211 - 444 2.6e-19 68.7 60.1 5 8 6.5e-06 0.0045 17.0 1.3 2 24 313 335 313 337 0.95 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF506-211 - 444 2.6e-19 68.7 60.1 6 8 5.6e-08 3.8e-05 23.5 1.9 2 24 341 363 341 366 0.95 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF506-211 - 444 2.6e-19 68.7 60.1 7 8 0.00017 0.12 12.5 0.4 2 24 369 391 369 394 0.92 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF506-211 - 444 2.6e-19 68.7 60.1 8 8 8.1e-06 0.0056 16.7 0.7 2 24 397 419 397 422 0.94 C2H2-type zinc finger zf-C2H2_11 PF16622.5 29 ZNF506-211 - 444 3.6e-16 58.6 17.4 1 8 0.15 1e+02 2.8 0.3 5 15 201 211 199 222 0.74 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF506-211 - 444 3.6e-16 58.6 17.4 2 8 0.052 36 4.2 0.2 5 26 229 250 226 251 0.82 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF506-211 - 444 3.6e-16 58.6 17.4 3 8 0.02 14 5.6 0.1 5 14 257 266 254 278 0.80 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF506-211 - 444 3.6e-16 58.6 17.4 4 8 0.0005 0.34 10.7 0.0 5 26 285 306 282 307 0.91 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF506-211 - 444 3.6e-16 58.6 17.4 5 8 0.0046 3.2 7.6 0.0 5 26 313 334 310 335 0.92 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF506-211 - 444 3.6e-16 58.6 17.4 6 8 7.1e-05 0.049 13.4 0.0 5 24 341 360 340 362 0.93 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF506-211 - 444 3.6e-16 58.6 17.4 7 8 0.0033 2.2 8.1 0.0 5 26 369 390 366 391 0.87 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF506-211 - 444 3.6e-16 58.6 17.4 8 8 0.00071 0.49 10.2 0.0 5 26 397 418 394 419 0.92 zinc-finger C2H2-type XPA_N PF01286.18 32 ZNF506-211 - 444 2e-12 46.9 32.0 1 9 3.6 2.5e+03 -1.4 0.0 3 15 174 186 174 192 0.80 XPA protein N-terminal XPA_N PF01286.18 32 ZNF506-211 - 444 2e-12 46.9 32.0 2 9 0.0062 4.3 7.5 0.2 3 15 202 214 200 220 0.81 XPA protein N-terminal XPA_N PF01286.18 32 ZNF506-211 - 444 2e-12 46.9 32.0 3 9 0.013 8.9 6.4 0.6 3 14 230 241 228 247 0.86 XPA protein N-terminal XPA_N PF01286.18 32 ZNF506-211 - 444 2e-12 46.9 32.0 4 9 0.019 13 5.9 0.1 3 11 258 266 256 268 0.88 XPA protein N-terminal XPA_N PF01286.18 32 ZNF506-211 - 444 2e-12 46.9 32.0 5 9 0.0021 1.4 9.0 0.1 3 14 286 297 284 303 0.87 XPA protein N-terminal XPA_N PF01286.18 32 ZNF506-211 - 444 2e-12 46.9 32.0 6 9 0.0012 0.83 9.8 0.2 3 14 314 325 312 330 0.89 XPA protein N-terminal XPA_N PF01286.18 32 ZNF506-211 - 444 2e-12 46.9 32.0 7 9 0.0026 1.8 8.7 0.1 3 12 342 351 340 357 0.91 XPA protein N-terminal XPA_N PF01286.18 32 ZNF506-211 - 444 2e-12 46.9 32.0 8 9 0.004 2.8 8.1 0.2 3 12 370 379 368 384 0.91 XPA protein N-terminal XPA_N PF01286.18 32 ZNF506-211 - 444 2e-12 46.9 32.0 9 9 0.0025 1.7 8.7 0.1 3 14 398 409 396 414 0.86 XPA protein N-terminal Zn-ribbon_8 PF09723.10 40 ZNF506-211 - 444 4.9e-12 45.7 40.0 1 8 0.0021 1.4 9.1 7.6 6 36 201 238 200 242 0.84 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF506-211 - 444 4.9e-12 45.7 40.0 2 8 0.029 20 5.4 1.2 6 16 229 239 228 248 0.84 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF506-211 - 444 4.9e-12 45.7 40.0 3 8 9.5e-05 0.065 13.4 3.7 6 34 257 292 256 295 0.86 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF506-211 - 444 4.9e-12 45.7 40.0 4 8 0.016 11 6.3 0.3 6 15 285 294 284 306 0.88 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF506-211 - 444 4.9e-12 45.7 40.0 5 8 0.0015 1 9.5 0.1 6 18 313 325 311 336 0.83 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF506-211 - 444 4.9e-12 45.7 40.0 6 8 0.0014 0.98 9.6 0.1 6 18 341 353 340 365 0.78 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF506-211 - 444 4.9e-12 45.7 40.0 7 8 9.4e-05 0.065 13.4 5.4 6 34 369 404 368 405 0.76 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF506-211 - 444 4.9e-12 45.7 40.0 8 8 0.0025 1.7 8.8 0.4 6 16 397 407 396 425 0.77 Zinc ribbon domain zf_UBZ PF18439.1 32 ZNF506-211 - 444 4.1e-11 42.3 35.0 1 9 0.46 3.2e+02 1.0 0.0 24 29 80 85 80 88 0.87 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF506-211 - 444 4.1e-11 42.3 35.0 2 9 0.0039 2.7 7.7 0.4 2 20 200 219 199 220 0.78 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF506-211 - 444 4.1e-11 42.3 35.0 3 9 0.006 4.1 7.1 1.0 3 20 229 247 227 248 0.85 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF506-211 - 444 4.1e-11 42.3 35.0 4 9 0.033 23 4.7 0.1 3 15 257 269 255 276 0.79 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF506-211 - 444 4.1e-11 42.3 35.0 5 9 0.0015 1 9.0 0.1 3 20 285 303 283 304 0.81 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF506-211 - 444 4.1e-11 42.3 35.0 6 9 0.0036 2.5 7.8 0.1 3 16 313 327 311 332 0.77 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF506-211 - 444 4.1e-11 42.3 35.0 7 9 0.0063 4.3 7.0 0.1 3 12 341 350 340 355 0.91 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF506-211 - 444 4.1e-11 42.3 35.0 8 9 0.0004 0.28 10.8 0.1 3 20 369 387 367 388 0.92 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF506-211 - 444 4.1e-11 42.3 35.0 9 9 0.0061 4.2 7.0 0.1 3 13 397 407 395 416 0.79 Ubiquitin-Binding Zinc Finger zf-trcl PF13451.6 48 ZNF506-211 - 444 5.3e-08 32.6 31.7 1 8 0.19 1.3e+02 2.6 0.9 3 44 199 211 189 215 0.62 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF506-211 - 444 5.3e-08 32.6 31.7 2 8 2.3 1.6e+03 -0.9 7.8 3 46 199 241 197 243 0.63 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF506-211 - 444 5.3e-08 32.6 31.7 3 8 0.027 19 5.3 0.1 3 14 255 266 253 271 0.70 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF506-211 - 444 5.3e-08 32.6 31.7 4 8 0.021 15 5.6 0.1 3 15 283 295 281 299 0.88 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF506-211 - 444 5.3e-08 32.6 31.7 5 8 0.032 22 5.0 0.1 3 14 311 322 309 326 0.87 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF506-211 - 444 5.3e-08 32.6 31.7 6 8 0.00028 0.19 11.6 0.1 2 18 338 354 337 359 0.90 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF506-211 - 444 5.3e-08 32.6 31.7 7 8 0.013 8.7 6.3 0.2 3 15 367 379 365 383 0.87 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF506-211 - 444 5.3e-08 32.6 31.7 8 8 0.0012 0.86 9.6 0.0 3 18 395 410 393 415 0.89 Probable zinc-ribbon domain # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF506-211.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF506-211.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF506-211.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF506-211.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF506-211.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:07:35 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF506-212.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF506-212.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF506-212.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF506-212.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF506-212.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:07:36 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-C2H2_4 PF13894.6 24 ZNF507-201 - 953 6.7e-13 48.3 69.8 1 9 0.00045 1 10.4 1.0 1 23 125 147 125 148 0.82 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF507-201 - 953 6.7e-13 48.3 69.8 2 9 0.0047 10 7.2 0.3 2 24 156 178 155 178 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF507-201 - 953 6.7e-13 48.3 69.8 3 9 0.017 38 5.5 2.6 1 23 248 270 248 271 0.74 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF507-201 - 953 6.7e-13 48.3 69.8 4 9 0.0061 14 6.9 1.7 1 23 641 663 641 664 0.80 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF507-201 - 953 6.7e-13 48.3 69.8 5 9 0.00053 1.2 10.2 0.5 1 23 669 691 669 691 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF507-201 - 953 6.7e-13 48.3 69.8 6 9 3.4e-06 0.0076 17.0 2.3 1 24 697 720 697 720 0.97 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF507-201 - 953 6.7e-13 48.3 69.8 7 9 0.00081 1.8 9.6 0.3 1 23 758 780 758 781 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF507-201 - 953 6.7e-13 48.3 69.8 8 9 0.00064 1.4 9.9 3.3 1 23 786 808 786 809 0.91 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF507-201 - 953 6.7e-13 48.3 69.8 9 9 4.9e-05 0.11 13.4 3.1 1 23 911 933 911 934 0.90 C2H2-type zinc finger zf-C2H2 PF00096.26 23 ZNF507-201 - 953 1.2e-12 47.6 75.4 1 9 0.011 24 5.6 1.4 1 23 125 147 125 147 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF507-201 - 953 1.2e-12 47.6 75.4 2 9 0.00077 1.7 9.2 0.2 2 23 156 178 155 178 0.89 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF507-201 - 953 1.2e-12 47.6 75.4 3 9 0.01 23 5.7 3.2 1 19 248 266 248 270 0.94 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF507-201 - 953 1.2e-12 47.6 75.4 4 9 0.0025 5.7 7.6 2.9 1 23 641 663 641 663 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF507-201 - 953 1.2e-12 47.6 75.4 5 9 0.00012 0.26 11.8 0.7 1 23 669 691 669 691 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF507-201 - 953 1.2e-12 47.6 75.4 6 9 1.2e-05 0.026 15.0 2.4 1 23 697 720 697 720 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF507-201 - 953 1.2e-12 47.6 75.4 7 9 0.00018 0.41 11.2 0.8 1 23 758 780 758 780 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF507-201 - 953 1.2e-12 47.6 75.4 8 9 4e-05 0.089 13.3 3.6 1 20 786 805 786 808 0.94 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF507-201 - 953 1.2e-12 47.6 75.4 9 9 0.00013 0.28 11.7 3.5 1 23 911 933 911 933 0.96 Zinc finger, C2H2 type zf-H2C2_2 PF13465.6 26 ZNF507-201 - 953 5.3e-10 39.3 66.5 1 13 0.1 2.2e+02 2.5 0.1 15 21 125 131 117 136 0.80 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF507-201 - 953 5.3e-10 39.3 66.5 2 13 0.0097 22 5.7 0.2 2 21 140 161 140 165 0.88 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF507-201 - 953 5.3e-10 39.3 66.5 3 13 1.1 2.4e+03 -0.7 0.0 9 24 185 205 171 207 0.79 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF507-201 - 953 5.3e-10 39.3 66.5 4 13 0.11 2.6e+02 2.3 0.1 14 24 247 257 221 259 0.68 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF507-201 - 953 5.3e-10 39.3 66.5 5 13 8 1.8e+04 -4.0 0.0 2 12 263 273 263 273 0.81 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF507-201 - 953 5.3e-10 39.3 66.5 6 13 0.0011 2.4 8.7 0.1 12 25 638 651 636 652 0.88 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF507-201 - 953 5.3e-10 39.3 66.5 7 13 1.6e-05 0.037 14.5 2.8 3 20 657 674 655 676 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF507-201 - 953 5.3e-10 39.3 66.5 8 13 0.00093 2.1 8.9 5.0 1 24 683 706 683 708 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF507-201 - 953 5.3e-10 39.3 66.5 9 13 3 6.8e+03 -2.2 0.2 2 9 712 720 711 722 0.80 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF507-201 - 953 5.3e-10 39.3 66.5 10 13 0.00081 1.8 9.1 0.2 11 26 754 769 751 769 0.88 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF507-201 - 953 5.3e-10 39.3 66.5 11 13 1.2e-07 0.00027 21.2 2.0 3 26 774 797 772 797 0.90 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF507-201 - 953 5.3e-10 39.3 66.5 12 13 0.37 8.3e+02 0.7 0.1 1 11 800 810 800 817 0.80 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF507-201 - 953 5.3e-10 39.3 66.5 13 13 0.073 1.6e+02 2.9 0.1 1 12 925 936 925 937 0.89 Zinc-finger double domain # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF507-201.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF507-201.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF507-201.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF507-201.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF507-201.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:07:36 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-C2H2_4 PF13894.6 24 ZNF507-202 - 953 6.7e-13 48.3 69.8 1 9 0.00045 1 10.4 1.0 1 23 125 147 125 148 0.82 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF507-202 - 953 6.7e-13 48.3 69.8 2 9 0.0047 10 7.2 0.3 2 24 156 178 155 178 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF507-202 - 953 6.7e-13 48.3 69.8 3 9 0.017 38 5.5 2.6 1 23 248 270 248 271 0.74 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF507-202 - 953 6.7e-13 48.3 69.8 4 9 0.0061 14 6.9 1.7 1 23 641 663 641 664 0.80 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF507-202 - 953 6.7e-13 48.3 69.8 5 9 0.00053 1.2 10.2 0.5 1 23 669 691 669 691 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF507-202 - 953 6.7e-13 48.3 69.8 6 9 3.4e-06 0.0076 17.0 2.3 1 24 697 720 697 720 0.97 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF507-202 - 953 6.7e-13 48.3 69.8 7 9 0.00081 1.8 9.6 0.3 1 23 758 780 758 781 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF507-202 - 953 6.7e-13 48.3 69.8 8 9 0.00064 1.4 9.9 3.3 1 23 786 808 786 809 0.91 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF507-202 - 953 6.7e-13 48.3 69.8 9 9 4.9e-05 0.11 13.4 3.1 1 23 911 933 911 934 0.90 C2H2-type zinc finger zf-C2H2 PF00096.26 23 ZNF507-202 - 953 1.2e-12 47.6 75.4 1 9 0.011 24 5.6 1.4 1 23 125 147 125 147 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF507-202 - 953 1.2e-12 47.6 75.4 2 9 0.00077 1.7 9.2 0.2 2 23 156 178 155 178 0.89 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF507-202 - 953 1.2e-12 47.6 75.4 3 9 0.01 23 5.7 3.2 1 19 248 266 248 270 0.94 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF507-202 - 953 1.2e-12 47.6 75.4 4 9 0.0025 5.7 7.6 2.9 1 23 641 663 641 663 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF507-202 - 953 1.2e-12 47.6 75.4 5 9 0.00012 0.26 11.8 0.7 1 23 669 691 669 691 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF507-202 - 953 1.2e-12 47.6 75.4 6 9 1.2e-05 0.026 15.0 2.4 1 23 697 720 697 720 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF507-202 - 953 1.2e-12 47.6 75.4 7 9 0.00018 0.41 11.2 0.8 1 23 758 780 758 780 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF507-202 - 953 1.2e-12 47.6 75.4 8 9 4e-05 0.089 13.3 3.6 1 20 786 805 786 808 0.94 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF507-202 - 953 1.2e-12 47.6 75.4 9 9 0.00013 0.28 11.7 3.5 1 23 911 933 911 933 0.96 Zinc finger, C2H2 type zf-H2C2_2 PF13465.6 26 ZNF507-202 - 953 5.3e-10 39.3 66.5 1 13 0.1 2.2e+02 2.5 0.1 15 21 125 131 117 136 0.80 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF507-202 - 953 5.3e-10 39.3 66.5 2 13 0.0097 22 5.7 0.2 2 21 140 161 140 165 0.88 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF507-202 - 953 5.3e-10 39.3 66.5 3 13 1.1 2.4e+03 -0.7 0.0 9 24 185 205 171 207 0.79 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF507-202 - 953 5.3e-10 39.3 66.5 4 13 0.11 2.6e+02 2.3 0.1 14 24 247 257 221 259 0.68 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF507-202 - 953 5.3e-10 39.3 66.5 5 13 8 1.8e+04 -4.0 0.0 2 12 263 273 263 273 0.81 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF507-202 - 953 5.3e-10 39.3 66.5 6 13 0.0011 2.4 8.7 0.1 12 25 638 651 636 652 0.88 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF507-202 - 953 5.3e-10 39.3 66.5 7 13 1.6e-05 0.037 14.5 2.8 3 20 657 674 655 676 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF507-202 - 953 5.3e-10 39.3 66.5 8 13 0.00093 2.1 8.9 5.0 1 24 683 706 683 708 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF507-202 - 953 5.3e-10 39.3 66.5 9 13 3 6.8e+03 -2.2 0.2 2 9 712 720 711 722 0.80 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF507-202 - 953 5.3e-10 39.3 66.5 10 13 0.00081 1.8 9.1 0.2 11 26 754 769 751 769 0.88 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF507-202 - 953 5.3e-10 39.3 66.5 11 13 1.2e-07 0.00027 21.2 2.0 3 26 774 797 772 797 0.90 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF507-202 - 953 5.3e-10 39.3 66.5 12 13 0.37 8.3e+02 0.7 0.1 1 11 800 810 800 817 0.80 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF507-202 - 953 5.3e-10 39.3 66.5 13 13 0.073 1.6e+02 2.9 0.1 1 12 925 936 925 937 0.89 Zinc-finger double domain # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF507-202.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF507-202.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF507-202.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF507-202.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF507-202.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:07:36 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-C2H2_4 PF13894.6 24 ZNF507-203 - 957 8e-13 48.1 70.1 1 9 0.0004 1 10.4 1.0 1 23 125 147 125 148 0.82 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF507-203 - 957 8e-13 48.1 70.1 2 9 0.0041 11 7.2 0.3 2 24 156 178 155 178 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF507-203 - 957 8e-13 48.1 70.1 3 9 0.015 39 5.5 2.6 1 23 248 270 248 271 0.74 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF507-203 - 957 8e-13 48.1 70.1 4 9 0.0054 14 6.9 1.7 1 23 641 663 641 664 0.80 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF507-203 - 957 8e-13 48.1 70.1 5 9 0.00047 1.2 10.2 0.5 1 23 669 691 669 691 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF507-203 - 957 8e-13 48.1 70.1 6 9 3e-06 0.0076 17.0 2.3 1 24 697 720 697 720 0.97 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF507-203 - 957 8e-13 48.1 70.1 7 9 0.00072 1.8 9.6 0.3 1 23 758 780 758 781 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF507-203 - 957 8e-13 48.1 70.1 8 9 0.00063 1.6 9.8 3.5 1 23 790 812 790 813 0.91 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF507-203 - 957 8e-13 48.1 70.1 9 9 4.3e-05 0.11 13.4 3.1 1 23 915 937 915 938 0.90 C2H2-type zinc finger zf-C2H2 PF00096.26 23 ZNF507-203 - 957 1.8e-12 46.9 75.5 1 9 0.0094 24 5.6 1.4 1 23 125 147 125 147 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF507-203 - 957 1.8e-12 46.9 75.5 2 9 0.00068 1.7 9.2 0.2 2 23 156 178 155 178 0.89 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF507-203 - 957 1.8e-12 46.9 75.5 3 9 0.0089 23 5.7 3.2 1 19 248 266 248 270 0.94 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF507-203 - 957 1.8e-12 46.9 75.5 4 9 0.0022 5.7 7.6 2.9 1 23 641 663 641 663 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF507-203 - 957 1.8e-12 46.9 75.5 5 9 0.0001 0.26 11.8 0.7 1 23 669 691 669 691 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF507-203 - 957 1.8e-12 46.9 75.5 6 9 1e-05 0.026 15.0 2.4 1 23 697 720 697 720 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF507-203 - 957 1.8e-12 46.9 75.5 7 9 0.00016 0.41 11.2 0.8 1 23 758 780 758 780 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF507-203 - 957 1.8e-12 46.9 75.5 8 9 5.2e-05 0.13 12.7 3.6 1 20 790 809 790 812 0.93 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF507-203 - 957 1.8e-12 46.9 75.5 9 9 0.00011 0.28 11.7 3.5 1 23 915 937 915 937 0.96 Zinc finger, C2H2 type zf-H2C2_2 PF13465.6 26 ZNF507-203 - 957 5.9e-08 32.8 67.3 1 13 0.088 2.3e+02 2.5 0.1 15 21 125 131 117 136 0.80 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF507-203 - 957 5.9e-08 32.8 67.3 2 13 0.0085 22 5.7 0.2 2 21 140 161 140 165 0.88 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF507-203 - 957 5.9e-08 32.8 67.3 3 13 0.94 2.4e+03 -0.7 0.0 9 24 185 205 171 207 0.79 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF507-203 - 957 5.9e-08 32.8 67.3 4 13 0.1 2.6e+02 2.3 0.1 14 24 247 257 221 259 0.68 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF507-203 - 957 5.9e-08 32.8 67.3 5 13 7 1.8e+04 -4.0 0.0 2 12 263 273 263 273 0.81 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF507-203 - 957 5.9e-08 32.8 67.3 6 13 0.00094 2.4 8.7 0.1 12 25 638 651 636 652 0.88 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF507-203 - 957 5.9e-08 32.8 67.3 7 13 1.4e-05 0.037 14.5 2.8 3 20 657 674 655 676 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF507-203 - 957 5.9e-08 32.8 67.3 8 13 0.00082 2.1 8.9 5.0 1 24 683 706 683 708 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF507-203 - 957 5.9e-08 32.8 67.3 9 13 2.7 6.9e+03 -2.2 0.2 2 9 712 720 711 722 0.80 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF507-203 - 957 5.9e-08 32.8 67.3 10 13 0.00071 1.8 9.1 0.2 11 26 754 769 751 769 0.88 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF507-203 - 957 5.9e-08 32.8 67.3 11 13 1e-05 0.026 14.9 2.7 3 26 774 801 772 801 0.83 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF507-203 - 957 5.9e-08 32.8 67.3 12 13 0.32 8.3e+02 0.7 0.1 1 11 804 814 804 821 0.80 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF507-203 - 957 5.9e-08 32.8 67.3 13 13 0.065 1.7e+02 2.9 0.1 1 12 929 940 929 941 0.89 Zinc-finger double domain # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF507-203.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF507-203.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF507-203.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF507-203.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF507-203.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:07:37 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF507-204.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF507-204.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF507-204.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF507-204.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF507-204.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:07:37 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-C2H2_4 PF13894.6 24 ZNF507-205 - 764 2.1e-08 34.3 42.1 1 6 0.00031 0.78 10.7 1.0 1 23 125 147 125 148 0.82 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF507-205 - 764 2.1e-08 34.3 42.1 2 6 0.0032 8.1 7.6 0.3 2 24 156 178 155 178 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF507-205 - 764 2.1e-08 34.3 42.1 3 6 0.012 30 5.8 2.6 1 23 248 270 248 271 0.74 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF507-205 - 764 2.1e-08 34.3 42.1 4 6 0.0041 11 7.2 1.7 1 23 641 663 641 664 0.80 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF507-205 - 764 2.1e-08 34.3 42.1 5 6 0.00036 0.92 10.5 0.5 1 23 669 691 669 691 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF507-205 - 764 2.1e-08 34.3 42.1 6 6 2.3e-06 0.0059 17.4 2.3 1 24 697 720 697 720 0.97 C2H2-type zinc finger zf-C2H2 PF00096.26 23 ZNF507-205 - 764 1.3e-07 31.6 45.0 1 6 0.0073 19 6.0 1.4 1 23 125 147 125 147 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF507-205 - 764 1.3e-07 31.6 45.0 2 6 0.00053 1.4 9.6 0.2 2 23 156 178 155 178 0.89 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF507-205 - 764 1.3e-07 31.6 45.0 3 6 0.0069 18 6.0 3.2 1 19 248 266 248 270 0.94 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF507-205 - 764 1.3e-07 31.6 45.0 4 6 0.0017 4.4 7.9 2.9 1 23 641 663 641 663 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF507-205 - 764 1.3e-07 31.6 45.0 5 6 7.8e-05 0.2 12.2 0.7 1 23 669 691 669 691 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF507-205 - 764 1.3e-07 31.6 45.0 6 6 7.9e-06 0.02 15.3 2.4 1 23 697 720 697 720 0.97 Zinc finger, C2H2 type # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF507-205.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF507-205.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF507-205.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF507-205.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF507-205.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:07:37 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZNF510-201 - 683 3.4e-75 245.4 81.7 1 13 4.5 3.9e+03 -1.4 0.1 7 16 218 227 217 227 0.85 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF510-201 - 683 3.4e-75 245.4 81.7 2 13 0.15 1.2e+02 3.3 0.1 3 13 270 280 268 295 0.79 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF510-201 - 683 3.4e-75 245.4 81.7 3 13 4.7 4e+03 -1.4 0.3 18 25 312 319 297 320 0.66 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF510-201 - 683 3.4e-75 245.4 81.7 4 13 1.6e-05 0.013 15.9 0.7 7 24 396 413 389 413 0.88 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF510-201 - 683 3.4e-75 245.4 81.7 5 13 6.4e-12 5.5e-09 36.1 1.1 1 25 418 442 418 443 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF510-201 - 683 3.4e-75 245.4 81.7 6 13 3.4e-10 2.9e-07 30.6 1.6 1 25 446 470 446 471 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF510-201 - 683 3.4e-75 245.4 81.7 7 13 5.8e-12 4.9e-09 36.2 0.3 2 25 475 498 474 499 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF510-201 - 683 3.4e-75 245.4 81.7 8 13 3.8e-09 3.3e-06 27.3 0.7 2 25 503 526 502 527 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF510-201 - 683 3.4e-75 245.4 81.7 9 13 3.7e-10 3.2e-07 30.5 0.5 1 25 530 554 530 555 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF510-201 - 683 3.4e-75 245.4 81.7 10 13 1.3e-10 1.1e-07 31.9 2.3 1 25 558 582 558 583 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF510-201 - 683 3.4e-75 245.4 81.7 11 13 4.4e-11 3.7e-08 33.4 1.1 2 26 587 611 586 611 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF510-201 - 683 3.4e-75 245.4 81.7 12 13 2.1e-11 1.8e-08 34.4 0.3 2 25 615 638 615 639 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF510-201 - 683 3.4e-75 245.4 81.7 13 13 1.2e-06 0.001 19.4 0.5 1 24 642 669 642 671 0.89 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZNF510-201 - 683 5.9e-51 168.2 95.6 1 11 0.72 6.1e+02 1.2 0.2 7 23 260 276 254 276 0.81 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF510-201 - 683 5.9e-51 168.2 95.6 2 11 0.79 6.7e+02 1.1 0.1 5 12 313 320 310 322 0.81 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF510-201 - 683 5.9e-51 168.2 95.6 3 11 7.1e-09 6e-06 26.4 4.9 1 23 404 426 404 426 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF510-201 - 683 5.9e-51 168.2 95.6 4 11 6.3e-09 5.3e-06 26.6 2.7 1 23 432 454 432 454 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF510-201 - 683 5.9e-51 168.2 95.6 5 11 9.9e-09 8.4e-06 26.0 0.9 1 23 460 482 460 482 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF510-201 - 683 5.9e-51 168.2 95.6 6 11 5.1e-08 4.3e-05 23.7 2.0 1 23 488 510 488 510 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF510-201 - 683 5.9e-51 168.2 95.6 7 11 1.9e-09 1.6e-06 28.2 1.3 1 23 516 538 516 538 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF510-201 - 683 5.9e-51 168.2 95.6 8 11 6.1e-07 0.00052 20.3 2.4 1 23 544 566 544 566 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF510-201 - 683 5.9e-51 168.2 95.6 9 11 2.2e-09 1.9e-06 28.0 1.0 1 23 572 594 572 594 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF510-201 - 683 5.9e-51 168.2 95.6 10 11 2.9e-06 0.0025 18.2 0.5 1 23 600 622 600 622 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF510-201 - 683 5.9e-51 168.2 95.6 11 11 1.6e-09 1.3e-06 28.5 1.6 1 23 628 650 628 650 0.99 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZNF510-201 - 683 1.8e-33 112.3 75.8 1 10 3.9 3.3e+03 -0.5 0.1 5 11 313 319 312 323 0.78 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF510-201 - 683 1.8e-33 112.3 75.8 2 10 7.2e-06 0.0061 17.3 4.0 1 23 404 426 404 427 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF510-201 - 683 1.8e-33 112.3 75.8 3 10 2.3e-06 0.002 18.8 2.4 1 23 432 454 432 455 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF510-201 - 683 1.8e-33 112.3 75.8 4 10 3e-06 0.0026 18.5 0.6 1 23 460 482 460 483 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF510-201 - 683 1.8e-33 112.3 75.8 5 10 5.6e-06 0.0048 17.6 1.4 1 23 488 510 488 511 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF510-201 - 683 1.8e-33 112.3 75.8 6 10 1.7e-06 0.0014 19.2 0.8 1 23 516 538 516 539 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF510-201 - 683 1.8e-33 112.3 75.8 7 10 6.4e-06 0.0055 17.4 2.2 1 23 544 566 544 567 0.97 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF510-201 - 683 1.8e-33 112.3 75.8 8 10 4.9e-06 0.0042 17.8 0.7 1 23 572 594 572 595 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF510-201 - 683 1.8e-33 112.3 75.8 9 10 7.9e-05 0.068 14.0 0.4 1 23 600 622 600 623 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF510-201 - 683 1.8e-33 112.3 75.8 10 10 4.3e-06 0.0037 18.0 1.0 1 23 628 650 628 651 0.96 C2H2-type zinc finger KRAB PF01352.27 42 ZNF510-201 - 683 3.7e-24 84.1 0.5 1 1 9e-27 7.7e-24 83.1 0.5 1 42 45 86 45 86 0.99 KRAB box zf-C2H2_6 PF13912.6 27 ZNF510-201 - 683 1.7e-13 50.2 75.9 1 10 0.33 2.8e+02 1.7 0.2 6 12 313 319 312 321 0.86 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF510-201 - 683 1.7e-13 50.2 75.9 2 10 0.044 37 4.5 6.0 2 11 404 413 404 426 0.89 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF510-201 - 683 1.7e-13 50.2 75.9 3 10 0.00031 0.26 11.3 1.2 2 12 432 442 432 454 0.89 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF510-201 - 683 1.7e-13 50.2 75.9 4 10 0.00019 0.16 12.0 0.8 2 22 460 480 460 484 0.85 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF510-201 - 683 1.7e-13 50.2 75.9 5 10 0.00026 0.22 11.5 0.4 2 11 488 497 488 508 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF510-201 - 683 1.7e-13 50.2 75.9 6 10 0.00013 0.11 12.5 1.2 2 24 516 538 515 541 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF510-201 - 683 1.7e-13 50.2 75.9 7 10 0.00021 0.18 11.9 1.9 2 24 544 566 543 569 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF510-201 - 683 1.7e-13 50.2 75.9 8 10 0.00044 0.37 10.8 0.4 2 13 572 583 572 595 0.80 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF510-201 - 683 1.7e-13 50.2 75.9 9 10 0.013 11 6.1 1.5 2 12 600 610 600 611 0.90 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF510-201 - 683 1.7e-13 50.2 75.9 10 10 0.00055 0.47 10.5 1.6 2 25 628 651 628 653 0.93 C2H2-type zinc finger Zn-ribbon_8 PF09723.10 40 ZNF510-201 - 683 1e-07 31.9 53.2 1 8 1.3 1.1e+03 -0.2 0.1 10 17 313 320 312 326 0.83 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF510-201 - 683 1e-07 31.9 53.2 2 8 0.018 16 5.8 8.6 6 35 404 440 403 444 0.86 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF510-201 - 683 1e-07 31.9 53.2 3 8 3.3e-05 0.029 14.5 4.5 6 35 432 469 431 473 0.88 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF510-201 - 683 1e-07 31.9 53.2 4 8 0.00012 0.1 12.7 4.8 6 35 460 497 458 501 0.87 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF510-201 - 683 1e-07 31.9 53.2 5 8 0.011 9.6 6.4 0.6 6 16 488 498 487 507 0.84 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF510-201 - 683 1e-07 31.9 53.2 6 8 0.001 0.89 9.7 3.5 6 34 516 551 515 557 0.87 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF510-201 - 683 1e-07 31.9 53.2 7 8 2.4e-06 0.0021 18.2 1.7 6 38 572 612 571 614 0.88 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF510-201 - 683 1e-07 31.9 53.2 8 8 0.038 32 4.7 1.2 6 16 628 638 626 666 0.78 Zinc ribbon domain # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF510-201.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF510-201.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF510-201.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF510-201.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF510-201.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:07:38 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF510-202.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF510-202.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF510-202.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF510-202.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF510-202.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:07:38 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZNF510-203 - 683 3.4e-75 245.4 81.7 1 13 4.5 3.9e+03 -1.4 0.1 7 16 218 227 217 227 0.85 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF510-203 - 683 3.4e-75 245.4 81.7 2 13 0.15 1.2e+02 3.3 0.1 3 13 270 280 268 295 0.79 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF510-203 - 683 3.4e-75 245.4 81.7 3 13 4.7 4e+03 -1.4 0.3 18 25 312 319 297 320 0.66 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF510-203 - 683 3.4e-75 245.4 81.7 4 13 1.6e-05 0.013 15.9 0.7 7 24 396 413 389 413 0.88 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF510-203 - 683 3.4e-75 245.4 81.7 5 13 6.4e-12 5.5e-09 36.1 1.1 1 25 418 442 418 443 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF510-203 - 683 3.4e-75 245.4 81.7 6 13 3.4e-10 2.9e-07 30.6 1.6 1 25 446 470 446 471 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF510-203 - 683 3.4e-75 245.4 81.7 7 13 5.8e-12 4.9e-09 36.2 0.3 2 25 475 498 474 499 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF510-203 - 683 3.4e-75 245.4 81.7 8 13 3.8e-09 3.3e-06 27.3 0.7 2 25 503 526 502 527 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF510-203 - 683 3.4e-75 245.4 81.7 9 13 3.7e-10 3.2e-07 30.5 0.5 1 25 530 554 530 555 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF510-203 - 683 3.4e-75 245.4 81.7 10 13 1.3e-10 1.1e-07 31.9 2.3 1 25 558 582 558 583 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF510-203 - 683 3.4e-75 245.4 81.7 11 13 4.4e-11 3.7e-08 33.4 1.1 2 26 587 611 586 611 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF510-203 - 683 3.4e-75 245.4 81.7 12 13 2.1e-11 1.8e-08 34.4 0.3 2 25 615 638 615 639 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF510-203 - 683 3.4e-75 245.4 81.7 13 13 1.2e-06 0.001 19.4 0.5 1 24 642 669 642 671 0.89 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZNF510-203 - 683 5.9e-51 168.2 95.6 1 11 0.72 6.1e+02 1.2 0.2 7 23 260 276 254 276 0.81 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF510-203 - 683 5.9e-51 168.2 95.6 2 11 0.79 6.7e+02 1.1 0.1 5 12 313 320 310 322 0.81 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF510-203 - 683 5.9e-51 168.2 95.6 3 11 7.1e-09 6e-06 26.4 4.9 1 23 404 426 404 426 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF510-203 - 683 5.9e-51 168.2 95.6 4 11 6.3e-09 5.3e-06 26.6 2.7 1 23 432 454 432 454 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF510-203 - 683 5.9e-51 168.2 95.6 5 11 9.9e-09 8.4e-06 26.0 0.9 1 23 460 482 460 482 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF510-203 - 683 5.9e-51 168.2 95.6 6 11 5.1e-08 4.3e-05 23.7 2.0 1 23 488 510 488 510 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF510-203 - 683 5.9e-51 168.2 95.6 7 11 1.9e-09 1.6e-06 28.2 1.3 1 23 516 538 516 538 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF510-203 - 683 5.9e-51 168.2 95.6 8 11 6.1e-07 0.00052 20.3 2.4 1 23 544 566 544 566 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF510-203 - 683 5.9e-51 168.2 95.6 9 11 2.2e-09 1.9e-06 28.0 1.0 1 23 572 594 572 594 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF510-203 - 683 5.9e-51 168.2 95.6 10 11 2.9e-06 0.0025 18.2 0.5 1 23 600 622 600 622 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF510-203 - 683 5.9e-51 168.2 95.6 11 11 1.6e-09 1.3e-06 28.5 1.6 1 23 628 650 628 650 0.99 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZNF510-203 - 683 1.8e-33 112.3 75.8 1 10 3.9 3.3e+03 -0.5 0.1 5 11 313 319 312 323 0.78 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF510-203 - 683 1.8e-33 112.3 75.8 2 10 7.2e-06 0.0061 17.3 4.0 1 23 404 426 404 427 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF510-203 - 683 1.8e-33 112.3 75.8 3 10 2.3e-06 0.002 18.8 2.4 1 23 432 454 432 455 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF510-203 - 683 1.8e-33 112.3 75.8 4 10 3e-06 0.0026 18.5 0.6 1 23 460 482 460 483 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF510-203 - 683 1.8e-33 112.3 75.8 5 10 5.6e-06 0.0048 17.6 1.4 1 23 488 510 488 511 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF510-203 - 683 1.8e-33 112.3 75.8 6 10 1.7e-06 0.0014 19.2 0.8 1 23 516 538 516 539 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF510-203 - 683 1.8e-33 112.3 75.8 7 10 6.4e-06 0.0055 17.4 2.2 1 23 544 566 544 567 0.97 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF510-203 - 683 1.8e-33 112.3 75.8 8 10 4.9e-06 0.0042 17.8 0.7 1 23 572 594 572 595 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF510-203 - 683 1.8e-33 112.3 75.8 9 10 7.9e-05 0.068 14.0 0.4 1 23 600 622 600 623 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF510-203 - 683 1.8e-33 112.3 75.8 10 10 4.3e-06 0.0037 18.0 1.0 1 23 628 650 628 651 0.96 C2H2-type zinc finger KRAB PF01352.27 42 ZNF510-203 - 683 3.7e-24 84.1 0.5 1 1 9e-27 7.7e-24 83.1 0.5 1 42 45 86 45 86 0.99 KRAB box zf-C2H2_6 PF13912.6 27 ZNF510-203 - 683 1.7e-13 50.2 75.9 1 10 0.33 2.8e+02 1.7 0.2 6 12 313 319 312 321 0.86 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF510-203 - 683 1.7e-13 50.2 75.9 2 10 0.044 37 4.5 6.0 2 11 404 413 404 426 0.89 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF510-203 - 683 1.7e-13 50.2 75.9 3 10 0.00031 0.26 11.3 1.2 2 12 432 442 432 454 0.89 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF510-203 - 683 1.7e-13 50.2 75.9 4 10 0.00019 0.16 12.0 0.8 2 22 460 480 460 484 0.85 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF510-203 - 683 1.7e-13 50.2 75.9 5 10 0.00026 0.22 11.5 0.4 2 11 488 497 488 508 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF510-203 - 683 1.7e-13 50.2 75.9 6 10 0.00013 0.11 12.5 1.2 2 24 516 538 515 541 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF510-203 - 683 1.7e-13 50.2 75.9 7 10 0.00021 0.18 11.9 1.9 2 24 544 566 543 569 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF510-203 - 683 1.7e-13 50.2 75.9 8 10 0.00044 0.37 10.8 0.4 2 13 572 583 572 595 0.80 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF510-203 - 683 1.7e-13 50.2 75.9 9 10 0.013 11 6.1 1.5 2 12 600 610 600 611 0.90 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF510-203 - 683 1.7e-13 50.2 75.9 10 10 0.00055 0.47 10.5 1.6 2 25 628 651 628 653 0.93 C2H2-type zinc finger Zn-ribbon_8 PF09723.10 40 ZNF510-203 - 683 1e-07 31.9 53.2 1 8 1.3 1.1e+03 -0.2 0.1 10 17 313 320 312 326 0.83 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF510-203 - 683 1e-07 31.9 53.2 2 8 0.018 16 5.8 8.6 6 35 404 440 403 444 0.86 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF510-203 - 683 1e-07 31.9 53.2 3 8 3.3e-05 0.029 14.5 4.5 6 35 432 469 431 473 0.88 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF510-203 - 683 1e-07 31.9 53.2 4 8 0.00012 0.1 12.7 4.8 6 35 460 497 458 501 0.87 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF510-203 - 683 1e-07 31.9 53.2 5 8 0.011 9.6 6.4 0.6 6 16 488 498 487 507 0.84 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF510-203 - 683 1e-07 31.9 53.2 6 8 0.001 0.89 9.7 3.5 6 34 516 551 515 557 0.87 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF510-203 - 683 1e-07 31.9 53.2 7 8 2.4e-06 0.0021 18.2 1.7 6 38 572 612 571 614 0.88 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF510-203 - 683 1e-07 31.9 53.2 8 8 0.038 32 4.7 1.2 6 16 628 638 626 666 0.78 Zinc ribbon domain # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF510-203.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF510-203.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF510-203.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF510-203.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF510-203.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:07:39 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- KRAB PF01352.27 42 ZNF510-204 - 80 1.8e-11 43.5 0.3 1 2 9.8e-16 1.8e-11 43.5 0.3 20 42 2 24 1 24 0.95 KRAB box KRAB PF01352.27 42 ZNF510-204 - 80 1.8e-11 43.5 0.3 2 2 0.19 3.5e+03 -2.2 0.5 11 15 44 48 44 53 0.83 KRAB box # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF510-204.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF510-204.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF510-204.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF510-204.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF510-204.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:07:39 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF511-201.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF511-201.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF511-201.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF511-201.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF511-201.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:07:39 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF511-202.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF511-202.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF511-202.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF511-202.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF511-202.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:07:40 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF511-203.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF511-203.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF511-203.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF511-203.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF511-203.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:07:40 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF511-204.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF511-204.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF511-204.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF511-204.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF511-204.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:07:40 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-C2H2 PF00096.26 23 ZNF512-201 - 567 1.7e-09 37.6 27.1 1 6 0.6 6.3e+02 1.2 0.1 3 20 171 189 170 191 0.75 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF512-201 - 567 1.7e-09 37.6 27.1 2 6 0.00096 1 10.0 2.2 1 23 197 220 197 220 0.91 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF512-201 - 567 1.7e-09 37.6 27.1 3 6 1 1.1e+03 0.4 0.2 2 21 252 273 251 274 0.83 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF512-201 - 567 1.7e-09 37.6 27.1 4 6 7.9e-07 0.00083 19.7 2.3 2 23 288 310 287 310 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF512-201 - 567 1.7e-09 37.6 27.1 5 6 0.014 15 6.3 0.0 2 20 407 427 406 429 0.94 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF512-201 - 567 1.7e-09 37.6 27.1 6 6 0.00012 0.13 12.8 0.3 1 23 440 463 440 463 0.98 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZNF512-201 - 567 2.4e-09 37.2 34.5 1 6 0.37 3.9e+02 2.3 0.2 3 22 171 191 169 193 0.68 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF512-201 - 567 2.4e-09 37.2 34.5 2 6 0.00051 0.53 11.3 1.9 1 24 197 220 197 220 0.91 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF512-201 - 567 2.4e-09 37.2 34.5 3 6 0.14 1.5e+02 3.7 0.6 6 22 258 274 251 275 0.87 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF512-201 - 567 2.4e-09 37.2 34.5 4 6 5.9e-06 0.0062 17.3 2.5 2 24 288 310 287 310 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF512-201 - 567 2.4e-09 37.2 34.5 5 6 0.0087 9.1 7.4 0.1 2 20 407 427 406 430 0.88 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF512-201 - 567 2.4e-09 37.2 34.5 6 6 2.4e-05 0.026 15.4 0.5 1 24 440 463 440 463 0.98 C2H2-type zinc finger CpXC PF14353.6 118 ZNF512-201 - 567 9.8e-08 32.1 7.8 1 3 6.5e-05 0.068 13.2 2.2 21 76 180 235 168 257 0.75 CpXC protein CpXC PF14353.6 118 ZNF512-201 - 567 9.8e-08 32.1 7.8 2 3 1.2e-05 0.012 15.6 0.0 37 85 286 341 280 379 0.78 CpXC protein CpXC PF14353.6 118 ZNF512-201 - 567 9.8e-08 32.1 7.8 3 3 0.069 72 3.5 0.1 37 85 439 502 433 539 0.62 CpXC protein # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF512-201.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF512-201.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF512-201.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF512-201.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF512-201.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:07:41 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-C2H2 PF00096.26 23 ZNF512-202 - 566 1.7e-09 37.6 27.1 1 6 0.6 6.3e+02 1.2 0.1 3 20 170 188 169 190 0.75 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF512-202 - 566 1.7e-09 37.6 27.1 2 6 0.00096 1 10.0 2.2 1 23 196 219 196 219 0.91 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF512-202 - 566 1.7e-09 37.6 27.1 3 6 1 1.1e+03 0.4 0.2 2 21 251 272 250 273 0.83 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF512-202 - 566 1.7e-09 37.6 27.1 4 6 7.9e-07 0.00083 19.7 2.3 2 23 287 309 286 309 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF512-202 - 566 1.7e-09 37.6 27.1 5 6 0.014 15 6.3 0.0 2 20 406 426 405 428 0.94 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF512-202 - 566 1.7e-09 37.6 27.1 6 6 0.00012 0.13 12.8 0.3 1 23 439 462 439 462 0.98 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZNF512-202 - 566 2.3e-09 37.3 34.5 1 6 0.37 3.9e+02 2.3 0.2 3 22 170 190 168 192 0.68 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF512-202 - 566 2.3e-09 37.3 34.5 2 6 0.00051 0.53 11.3 1.9 1 24 196 219 196 219 0.91 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF512-202 - 566 2.3e-09 37.3 34.5 3 6 0.14 1.5e+02 3.7 0.6 6 22 257 273 250 274 0.87 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF512-202 - 566 2.3e-09 37.3 34.5 4 6 5.9e-06 0.0062 17.3 2.5 2 24 287 309 286 309 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF512-202 - 566 2.3e-09 37.3 34.5 5 6 0.0086 9.1 7.4 0.1 2 20 406 426 405 429 0.88 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF512-202 - 566 2.3e-09 37.3 34.5 6 6 2.4e-05 0.026 15.4 0.5 1 24 439 462 439 462 0.98 C2H2-type zinc finger CpXC PF14353.6 118 ZNF512-202 - 566 9.7e-08 32.1 7.8 1 3 6.5e-05 0.068 13.2 2.2 21 76 179 234 167 256 0.75 CpXC protein CpXC PF14353.6 118 ZNF512-202 - 566 9.7e-08 32.1 7.8 2 3 1.2e-05 0.012 15.6 0.0 37 85 285 340 279 378 0.78 CpXC protein CpXC PF14353.6 118 ZNF512-202 - 566 9.7e-08 32.1 7.8 3 3 0.068 72 3.5 0.1 37 85 438 501 432 538 0.62 CpXC protein # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF512-202.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF512-202.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF512-202.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF512-202.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF512-202.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:07:41 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-C2H2 PF00096.26 23 ZNF512-203 - 490 7.1e-10 38.8 27.1 1 6 0.54 5.4e+02 1.4 0.1 3 20 94 112 93 114 0.75 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF512-203 - 490 7.1e-10 38.8 27.1 2 6 0.00085 0.85 10.2 2.2 1 23 120 143 120 143 0.91 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF512-203 - 490 7.1e-10 38.8 27.1 3 6 0.91 9e+02 0.7 0.2 2 21 175 196 174 197 0.83 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF512-203 - 490 7.1e-10 38.8 27.1 4 6 7e-07 0.0007 19.9 2.3 2 23 211 233 210 233 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF512-203 - 490 7.1e-10 38.8 27.1 5 6 0.012 12 6.5 0.0 2 20 330 350 329 352 0.94 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF512-203 - 490 7.1e-10 38.8 27.1 6 6 0.00011 0.11 13.0 0.3 1 23 363 386 363 386 0.98 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZNF512-203 - 490 9e-10 38.6 34.5 1 6 0.33 3.3e+02 2.6 0.2 3 22 94 114 92 116 0.68 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF512-203 - 490 9e-10 38.6 34.5 2 6 0.00045 0.45 11.5 1.9 1 24 120 143 120 143 0.91 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF512-203 - 490 9e-10 38.6 34.5 3 6 0.12 1.2e+02 3.9 0.6 6 22 181 197 174 198 0.87 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF512-203 - 490 9e-10 38.6 34.5 4 6 5.2e-06 0.0052 17.5 2.5 2 24 211 233 210 233 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF512-203 - 490 9e-10 38.6 34.5 5 6 0.0077 7.7 7.7 0.1 2 20 330 350 329 353 0.88 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF512-203 - 490 9e-10 38.6 34.5 6 6 2.2e-05 0.022 15.6 0.5 1 24 363 386 363 386 0.98 C2H2-type zinc finger CpXC PF14353.6 118 ZNF512-203 - 490 7.4e-08 32.5 8.4 1 3 8.3e-05 0.083 12.9 2.7 21 76 103 158 91 179 0.75 CpXC protein CpXC PF14353.6 118 ZNF512-203 - 490 7.4e-08 32.5 8.4 2 3 1e-05 0.01 15.9 0.0 37 85 209 264 203 302 0.78 CpXC protein CpXC PF14353.6 118 ZNF512-203 - 490 7.4e-08 32.5 8.4 3 3 0.058 58 3.8 0.1 37 85 362 425 356 462 0.62 CpXC protein # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF512-203.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF512-203.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF512-203.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF512-203.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF512-203.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:07:42 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-C2H2 PF00096.26 23 ZNF512-204 - 538 1.2e-09 38.1 27.1 1 6 0.6 6e+02 1.2 0.1 3 20 142 160 141 162 0.75 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF512-204 - 538 1.2e-09 38.1 27.1 2 6 0.00096 0.95 10.0 2.2 1 23 168 191 168 191 0.91 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF512-204 - 538 1.2e-09 38.1 27.1 3 6 1 1e+03 0.5 0.2 2 21 223 244 222 245 0.83 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF512-204 - 538 1.2e-09 38.1 27.1 4 6 7.9e-07 0.00078 19.8 2.3 2 23 259 281 258 281 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF512-204 - 538 1.2e-09 38.1 27.1 5 6 0.014 14 6.4 0.0 2 20 378 398 377 400 0.94 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF512-204 - 538 1.2e-09 38.1 27.1 6 6 0.00012 0.12 12.8 0.3 1 23 411 434 411 434 0.98 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZNF512-204 - 538 1.6e-09 37.8 34.5 1 6 0.37 3.7e+02 2.4 0.2 3 22 142 162 140 164 0.68 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF512-204 - 538 1.6e-09 37.8 34.5 2 6 0.0005 0.5 11.3 1.9 1 24 168 191 168 191 0.91 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF512-204 - 538 1.6e-09 37.8 34.5 3 6 0.14 1.4e+02 3.7 0.6 6 22 229 245 222 246 0.87 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF512-204 - 538 1.6e-09 37.8 34.5 4 6 5.8e-06 0.0058 17.4 2.5 2 24 259 281 258 281 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF512-204 - 538 1.6e-09 37.8 34.5 5 6 0.0086 8.6 7.5 0.1 2 20 378 398 377 401 0.88 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF512-204 - 538 1.6e-09 37.8 34.5 6 6 2.4e-05 0.024 15.4 0.5 1 24 411 434 411 434 0.98 C2H2-type zinc finger CpXC PF14353.6 118 ZNF512-204 - 538 8.5e-08 32.3 8.0 1 3 7.6e-05 0.075 13.1 2.4 21 76 151 206 139 229 0.75 CpXC protein CpXC PF14353.6 118 ZNF512-204 - 538 8.5e-08 32.3 8.0 2 3 1.2e-05 0.012 15.7 0.0 37 85 257 312 251 350 0.78 CpXC protein CpXC PF14353.6 118 ZNF512-204 - 538 8.5e-08 32.3 8.0 3 3 0.067 67 3.6 0.1 37 85 410 473 404 510 0.62 CpXC protein # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF512-204.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF512-204.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF512-204.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF512-204.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF512-204.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:07:42 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF512-205.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF512-205.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF512-205.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF512-205.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF512-205.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:07:42 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF512-206.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF512-206.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF512-206.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF512-206.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF512-206.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:07:43 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF512-207.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF512-207.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF512-207.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF512-207.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF512-207.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:07:43 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-C2H2 PF00096.26 23 ZNF512-208 - 490 7.1e-10 38.8 27.1 1 6 0.54 5.4e+02 1.4 0.1 3 20 94 112 93 114 0.75 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF512-208 - 490 7.1e-10 38.8 27.1 2 6 0.00085 0.85 10.2 2.2 1 23 120 143 120 143 0.91 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF512-208 - 490 7.1e-10 38.8 27.1 3 6 0.91 9e+02 0.7 0.2 2 21 175 196 174 197 0.83 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF512-208 - 490 7.1e-10 38.8 27.1 4 6 7e-07 0.0007 19.9 2.3 2 23 211 233 210 233 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF512-208 - 490 7.1e-10 38.8 27.1 5 6 0.012 12 6.5 0.0 2 20 330 350 329 352 0.94 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF512-208 - 490 7.1e-10 38.8 27.1 6 6 0.00011 0.11 13.0 0.3 1 23 363 386 363 386 0.98 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZNF512-208 - 490 9e-10 38.6 34.5 1 6 0.33 3.3e+02 2.6 0.2 3 22 94 114 92 116 0.68 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF512-208 - 490 9e-10 38.6 34.5 2 6 0.00045 0.45 11.5 1.9 1 24 120 143 120 143 0.91 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF512-208 - 490 9e-10 38.6 34.5 3 6 0.12 1.2e+02 3.9 0.6 6 22 181 197 174 198 0.87 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF512-208 - 490 9e-10 38.6 34.5 4 6 5.2e-06 0.0052 17.5 2.5 2 24 211 233 210 233 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF512-208 - 490 9e-10 38.6 34.5 5 6 0.0077 7.7 7.7 0.1 2 20 330 350 329 353 0.88 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF512-208 - 490 9e-10 38.6 34.5 6 6 2.2e-05 0.022 15.6 0.5 1 24 363 386 363 386 0.98 C2H2-type zinc finger CpXC PF14353.6 118 ZNF512-208 - 490 7.4e-08 32.5 8.4 1 3 8.3e-05 0.083 12.9 2.7 21 76 103 158 91 179 0.75 CpXC protein CpXC PF14353.6 118 ZNF512-208 - 490 7.4e-08 32.5 8.4 2 3 1e-05 0.01 15.9 0.0 37 85 209 264 203 302 0.78 CpXC protein CpXC PF14353.6 118 ZNF512-208 - 490 7.4e-08 32.5 8.4 3 3 0.058 58 3.8 0.1 37 85 362 425 356 462 0.62 CpXC protein # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF512-208.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF512-208.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF512-208.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF512-208.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF512-208.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:07:43 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-C2H2 PF00096.26 23 ZNF512B-201 - 892 5.5e-12 45.4 37.6 1 8 0.028 33 5.2 0.0 2 21 106 127 105 128 0.93 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF512B-201 - 892 5.5e-12 45.4 37.6 2 8 1.4e-05 0.017 15.6 0.2 1 23 140 163 140 163 0.94 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF512B-201 - 892 5.5e-12 45.4 37.6 3 8 0.07 84 3.9 0.1 2 20 511 530 511 532 0.90 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF512B-201 - 892 5.5e-12 45.4 37.6 4 8 0.00021 0.25 11.9 2.1 2 23 541 563 540 563 0.92 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF512B-201 - 892 5.5e-12 45.4 37.6 5 8 0.0035 4.2 8.0 0.0 2 22 595 617 594 617 0.95 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF512B-201 - 892 5.5e-12 45.4 37.6 6 8 0.0048 5.8 7.6 3.0 1 22 630 651 630 653 0.77 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF512B-201 - 892 5.5e-12 45.4 37.6 7 8 1.9 2.2e+03 -0.6 0.1 6 20 757 771 751 773 0.83 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF512B-201 - 892 5.5e-12 45.4 37.6 8 8 5.9e-05 0.071 13.6 0.5 1 23 784 807 784 807 0.97 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZNF512B-201 - 892 9.1e-12 44.8 48.2 1 8 3.2 3.8e+03 -0.7 0.1 9 21 115 127 106 129 0.80 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF512B-201 - 892 9.1e-12 44.8 48.2 2 8 1.2e-05 0.015 16.1 0.4 1 21 140 160 140 163 0.90 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF512B-201 - 892 9.1e-12 44.8 48.2 3 8 0.17 2e+02 3.2 0.3 3 21 512 531 511 533 0.70 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF512B-201 - 892 9.1e-12 44.8 48.2 4 8 7.1e-05 0.085 13.7 1.9 2 24 541 563 540 563 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF512B-201 - 892 9.1e-12 44.8 48.2 5 8 0.0057 6.8 7.8 0.3 2 22 595 617 594 618 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF512B-201 - 892 9.1e-12 44.8 48.2 6 8 4e-05 0.047 14.5 2.9 1 24 630 653 630 653 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF512B-201 - 892 9.1e-12 44.8 48.2 7 8 0.024 29 5.9 0.4 3 22 752 773 750 775 0.83 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF512B-201 - 892 9.1e-12 44.8 48.2 8 8 0.00011 0.13 13.2 0.6 1 24 784 807 784 807 0.95 C2H2-type zinc finger # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF512B-201.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF512B-201.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF512B-201.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF512B-201.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF512B-201.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:07:44 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZNF513-201 - 541 7.6e-44 146.3 82.8 1 11 1.8 5.4e+03 -1.9 0.1 15 21 150 156 145 159 0.76 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF513-201 - 541 7.6e-44 146.3 82.8 2 11 2.8e-09 8.2e-06 26.0 1.3 1 25 164 188 164 189 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF513-201 - 541 7.6e-44 146.3 82.8 3 11 3.9e-11 1.2e-07 31.8 4.8 1 24 192 215 192 217 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF513-201 - 541 7.6e-44 146.3 82.8 4 11 0.00014 0.42 11.1 2.6 1 22 220 241 220 243 0.89 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF513-201 - 541 7.6e-44 146.3 82.8 5 11 2.4 7.3e+03 -2.3 0.1 13 21 312 320 312 321 0.85 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF513-201 - 541 7.6e-44 146.3 82.8 6 11 0.048 1.4e+02 3.1 0.2 13 24 358 369 353 371 0.78 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF513-201 - 541 7.6e-44 146.3 82.8 7 11 2.9e-09 8.7e-06 25.9 2.8 1 26 374 399 374 399 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF513-201 - 541 7.6e-44 146.3 82.8 8 11 1.1e-13 3.2e-10 40.0 2.5 1 25 402 426 402 427 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF513-201 - 541 7.6e-44 146.3 82.8 9 11 4.7e-09 1.4e-05 25.3 1.3 1 24 430 453 430 455 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF513-201 - 541 7.6e-44 146.3 82.8 10 11 7.4e-11 2.2e-07 31.0 1.8 1 26 458 483 458 483 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF513-201 - 541 7.6e-44 146.3 82.8 11 11 0.12 3.6e+02 1.9 0.4 1 9 486 494 486 498 0.92 Zinc-finger double domain zf-H2C2_5 PF13909.6 26 ZNF513-201 - 541 3.9e-36 122.4 58.9 1 8 3.1e-06 0.0094 15.7 6.8 1 26 150 174 150 174 0.98 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 ZNF513-201 - 541 3.9e-36 122.4 58.9 2 8 1.8e-07 0.00054 19.7 0.1 1 26 178 202 178 202 0.97 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 ZNF513-201 - 541 3.9e-36 122.4 58.9 3 8 1.2e-08 3.6e-05 23.4 0.8 1 26 206 230 206 230 0.96 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 ZNF513-201 - 541 3.9e-36 122.4 58.9 4 8 1.4e-08 4.3e-05 23.2 0.8 3 26 362 384 360 384 0.95 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 ZNF513-201 - 541 3.9e-36 122.4 58.9 5 8 8.7e-09 2.6e-05 23.9 0.3 1 26 388 412 388 412 0.98 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 ZNF513-201 - 541 3.9e-36 122.4 58.9 6 8 2.6e-07 0.00076 19.2 0.1 1 26 416 440 416 440 0.98 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 ZNF513-201 - 541 3.9e-36 122.4 58.9 7 8 2e-08 6.1e-05 22.7 3.9 1 26 444 468 444 468 0.98 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 ZNF513-201 - 541 3.9e-36 122.4 58.9 8 8 0.002 6.1 6.7 3.4 1 24 472 494 472 496 0.95 C2H2-type zinc-finger domain zf-C2H2 PF00096.26 23 ZNF513-201 - 541 1.5e-20 72.4 94.7 1 10 7.9e-05 0.24 12.0 7.4 1 23 150 172 150 172 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF513-201 - 541 1.5e-20 72.4 94.7 2 10 4.1e-06 0.012 16.0 0.5 1 23 178 200 178 200 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF513-201 - 541 1.5e-20 72.4 94.7 3 10 8.7e-08 0.00026 21.3 4.6 1 23 206 228 206 228 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF513-201 - 541 1.5e-20 72.4 94.7 4 10 6 1.8e+04 -3.6 6.7 2 13 235 246 235 247 0.84 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF513-201 - 541 1.5e-20 72.4 94.7 5 10 0.87 2.6e+03 -0.8 0.1 2 8 315 321 314 323 0.85 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF513-201 - 541 1.5e-20 72.4 94.7 6 10 4.7e-05 0.14 12.7 3.0 1 23 360 382 360 382 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF513-201 - 541 1.5e-20 72.4 94.7 7 10 4.4e-06 0.013 15.9 1.3 1 23 388 410 388 410 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF513-201 - 541 1.5e-20 72.4 94.7 8 10 2.5e-06 0.0076 16.7 0.5 1 23 416 438 416 438 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF513-201 - 541 1.5e-20 72.4 94.7 9 10 1e-06 0.003 17.9 5.2 1 23 444 466 444 466 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF513-201 - 541 1.5e-20 72.4 94.7 10 10 5.3e-05 0.16 12.5 2.1 1 23 472 494 472 494 0.98 Zinc finger, C2H2 type # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF513-201.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF513-201.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF513-201.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF513-201.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF513-201.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:07:44 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZNF513-202 - 479 2.2e-44 148.0 82.8 1 11 1.8 4.7e+03 -1.7 0.1 15 21 88 94 83 97 0.76 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF513-202 - 479 2.2e-44 148.0 82.8 2 11 2.8e-09 7.1e-06 26.2 1.3 1 25 102 126 102 127 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF513-202 - 479 2.2e-44 148.0 82.8 3 11 4e-11 1e-07 32.0 4.8 1 24 130 153 130 155 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF513-202 - 479 2.2e-44 148.0 82.8 4 11 0.00014 0.37 11.3 2.6 1 22 158 179 158 181 0.89 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF513-202 - 479 2.2e-44 148.0 82.8 5 11 2.5 6.4e+03 -2.1 0.1 13 21 250 258 250 259 0.85 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF513-202 - 479 2.2e-44 148.0 82.8 6 11 0.048 1.2e+02 3.3 0.2 13 24 296 307 291 309 0.78 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF513-202 - 479 2.2e-44 148.0 82.8 7 11 2.9e-09 7.5e-06 26.1 2.8 1 26 312 337 312 337 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF513-202 - 479 2.2e-44 148.0 82.8 8 11 1.1e-13 2.7e-10 40.2 2.5 1 25 340 364 340 365 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF513-202 - 479 2.2e-44 148.0 82.8 9 11 4.8e-09 1.2e-05 25.5 1.3 1 24 368 391 368 393 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF513-202 - 479 2.2e-44 148.0 82.8 10 11 7.5e-11 1.9e-07 31.2 1.8 1 26 396 421 396 421 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF513-202 - 479 2.2e-44 148.0 82.8 11 11 0.12 3.1e+02 2.1 0.4 1 9 424 432 424 436 0.92 Zinc-finger double domain zf-H2C2_5 PF13909.6 26 ZNF513-202 - 479 1.3e-36 124.0 58.9 1 8 3.2e-06 0.0081 15.9 6.8 1 26 88 112 88 112 0.98 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 ZNF513-202 - 479 1.3e-36 124.0 58.9 2 8 1.8e-07 0.00047 19.9 0.1 1 26 116 140 116 140 0.97 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 ZNF513-202 - 479 1.3e-36 124.0 58.9 3 8 1.2e-08 3.2e-05 23.6 0.8 1 26 144 168 144 168 0.96 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 ZNF513-202 - 479 1.3e-36 124.0 58.9 4 8 1.4e-08 3.7e-05 23.4 0.8 3 26 300 322 298 322 0.95 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 ZNF513-202 - 479 1.3e-36 124.0 58.9 5 8 8.7e-09 2.2e-05 24.1 0.3 1 26 326 350 326 350 0.98 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 ZNF513-202 - 479 1.3e-36 124.0 58.9 6 8 2.6e-07 0.00066 19.4 0.1 1 26 354 378 354 378 0.98 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 ZNF513-202 - 479 1.3e-36 124.0 58.9 7 8 2e-08 5.2e-05 22.9 3.9 1 26 382 406 382 406 0.98 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 ZNF513-202 - 479 1.3e-36 124.0 58.9 8 8 0.0021 5.3 6.9 3.4 1 24 410 432 410 434 0.95 C2H2-type zinc-finger domain zf-C2H2 PF00096.26 23 ZNF513-202 - 479 3.7e-21 74.3 94.7 1 10 8e-05 0.2 12.2 7.4 1 23 88 110 88 110 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF513-202 - 479 3.7e-21 74.3 94.7 2 10 4.1e-06 0.011 16.2 0.5 1 23 116 138 116 138 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF513-202 - 479 3.7e-21 74.3 94.7 3 10 8.8e-08 0.00022 21.5 4.6 1 23 144 166 144 166 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF513-202 - 479 3.7e-21 74.3 94.7 4 10 6.9 1.8e+04 -3.4 6.7 2 13 173 184 173 185 0.84 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF513-202 - 479 3.7e-21 74.3 94.7 5 10 0.89 2.3e+03 -0.6 0.1 2 8 253 259 252 261 0.85 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF513-202 - 479 3.7e-21 74.3 94.7 6 10 4.7e-05 0.12 12.9 3.0 1 23 298 320 298 320 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF513-202 - 479 3.7e-21 74.3 94.7 7 10 4.4e-06 0.011 16.1 1.3 1 23 326 348 326 348 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF513-202 - 479 3.7e-21 74.3 94.7 8 10 2.6e-06 0.0065 16.9 0.5 1 23 354 376 354 376 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF513-202 - 479 3.7e-21 74.3 94.7 9 10 1e-06 0.0026 18.1 5.2 1 23 382 404 382 404 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF513-202 - 479 3.7e-21 74.3 94.7 10 10 5.3e-05 0.14 12.7 2.1 1 23 410 432 410 432 0.98 Zinc finger, C2H2 type # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF513-202.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF513-202.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF513-202.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF513-202.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF513-202.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:07:45 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF513-203.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF513-203.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF513-203.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF513-203.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF513-203.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:07:45 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF513-204.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF513-204.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF513-204.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF513-204.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF513-204.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:07:45 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZNF514-201 - 400 6.1e-53 175.0 59.4 1 8 0.042 24 5.6 4.0 6 24 195 213 192 214 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF514-201 - 400 6.1e-53 175.0 59.4 2 8 6.3e-12 3.7e-09 36.6 2.3 2 26 219 243 218 243 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF514-201 - 400 6.1e-53 175.0 59.4 3 8 9e-12 5.2e-09 36.1 0.3 2 25 247 270 246 271 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF514-201 - 400 6.1e-53 175.0 59.4 4 8 2.7e-10 1.6e-07 31.4 1.5 2 26 275 299 274 299 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF514-201 - 400 6.1e-53 175.0 59.4 5 8 4.1e-11 2.3e-08 34.1 0.6 2 25 303 326 302 327 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF514-201 - 400 6.1e-53 175.0 59.4 6 8 5.7e-10 3.3e-07 30.4 0.9 2 25 331 354 330 355 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF514-201 - 400 6.1e-53 175.0 59.4 7 8 1.2e-10 7.2e-08 32.5 2.4 1 26 358 383 358 383 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF514-201 - 400 6.1e-53 175.0 59.4 8 8 0.17 1e+02 3.6 0.2 2 13 387 398 386 400 0.87 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZNF514-201 - 400 3.8e-38 127.8 64.1 1 7 3.1e-05 0.018 15.5 8.5 2 21 205 224 204 226 0.94 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF514-201 - 400 3.8e-38 127.8 64.1 2 7 2.7e-08 1.6e-05 25.1 0.8 1 23 232 254 232 254 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF514-201 - 400 3.8e-38 127.8 64.1 3 7 8.7e-08 5e-05 23.5 0.7 1 23 260 282 260 282 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF514-201 - 400 3.8e-38 127.8 64.1 4 7 1.4e-08 7.9e-06 26.1 1.9 1 23 288 310 288 310 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF514-201 - 400 3.8e-38 127.8 64.1 5 7 3.7e-08 2.1e-05 24.7 1.2 1 23 316 338 316 338 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF514-201 - 400 3.8e-38 127.8 64.1 6 7 3.6e-08 2.1e-05 24.7 2.8 1 23 344 366 344 366 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF514-201 - 400 3.8e-38 127.8 64.1 7 7 2.9e-08 1.7e-05 25.0 1.1 1 23 372 394 372 394 0.99 Zinc finger, C2H2 type KRAB PF01352.27 42 ZNF514-201 - 400 1.6e-23 82.0 0.3 1 1 4.8e-26 2.8e-23 81.3 0.3 2 42 1 41 1 41 0.99 KRAB box zf-C2H2_4 PF13894.6 24 ZNF514-201 - 400 2.8e-19 68.1 56.0 1 7 0.0088 5.1 8.2 8.0 2 21 205 224 204 226 0.91 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF514-201 - 400 2.8e-19 68.1 56.0 2 7 7e-05 0.04 14.8 0.6 1 23 232 254 232 255 0.97 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF514-201 - 400 2.8e-19 68.1 56.0 3 7 0.00012 0.067 14.1 0.9 1 23 260 282 260 283 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF514-201 - 400 2.8e-19 68.1 56.0 4 7 7.6e-05 0.044 14.6 1.2 1 23 288 310 288 311 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF514-201 - 400 2.8e-19 68.1 56.0 5 7 8.7e-06 0.005 17.6 1.0 1 23 316 338 316 339 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF514-201 - 400 2.8e-19 68.1 56.0 6 7 3.5e-05 0.02 15.7 2.0 1 23 344 366 344 367 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF514-201 - 400 2.8e-19 68.1 56.0 7 7 7.2e-05 0.042 14.7 0.6 1 23 372 394 372 395 0.96 C2H2-type zinc finger zf-C2H2_11 PF16622.5 29 ZNF514-201 - 400 2.2e-15 56.1 39.5 1 7 0.00082 0.47 10.3 5.8 3 24 202 223 200 225 0.91 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF514-201 - 400 2.2e-15 56.1 39.5 2 7 0.0047 2.7 7.8 0.2 6 24 233 251 230 253 0.91 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF514-201 - 400 2.2e-15 56.1 39.5 3 7 0.0015 0.86 9.4 0.5 6 23 261 278 258 281 0.87 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF514-201 - 400 2.2e-15 56.1 39.5 4 7 0.00069 0.4 10.5 0.2 5 24 288 307 285 309 0.91 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF514-201 - 400 2.2e-15 56.1 39.5 5 7 0.0004 0.23 11.3 0.3 6 23 317 334 314 337 0.86 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF514-201 - 400 2.2e-15 56.1 39.5 6 7 5.6e-05 0.032 14.0 0.6 5 24 344 363 341 365 0.91 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF514-201 - 400 2.2e-15 56.1 39.5 7 7 6.1e-05 0.035 13.8 0.1 5 24 372 391 369 392 0.92 zinc-finger C2H2-type zf-C2H2_6 PF13912.6 27 ZNF514-201 - 400 2.6e-13 49.6 55.2 1 7 5.7e-05 0.033 14.2 5.9 3 24 205 226 205 229 0.95 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF514-201 - 400 2.6e-13 49.6 55.2 2 7 2.8e-05 0.016 15.2 0.7 2 24 232 254 232 257 0.96 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF514-201 - 400 2.6e-13 49.6 55.2 3 7 0.002 1.1 9.3 0.3 2 12 260 270 260 275 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF514-201 - 400 2.6e-13 49.6 55.2 4 7 4.9e-05 0.029 14.4 2.0 2 24 288 310 288 313 0.95 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF514-201 - 400 2.6e-13 49.6 55.2 5 7 0.0046 2.7 8.1 0.8 2 13 316 327 316 338 0.81 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF514-201 - 400 2.6e-13 49.6 55.2 6 7 0.037 21 5.2 2.1 2 20 344 362 344 367 0.83 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF514-201 - 400 2.6e-13 49.6 55.2 7 7 6.1e-05 0.036 14.1 1.7 2 24 372 394 372 397 0.96 C2H2-type zinc finger zf-trcl PF13451.6 48 ZNF514-201 - 400 5.1e-08 32.7 18.6 1 7 0.017 10 6.1 1.4 3 17 202 216 200 219 0.86 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF514-201 - 400 5.1e-08 32.7 18.6 2 7 0.04 23 5.0 0.0 3 14 230 241 228 245 0.88 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF514-201 - 400 5.1e-08 32.7 18.6 3 7 0.14 80 3.2 0.1 3 14 258 269 256 274 0.86 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF514-201 - 400 5.1e-08 32.7 18.6 4 7 0.02 12 5.9 0.0 3 17 286 300 284 303 0.84 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF514-201 - 400 5.1e-08 32.7 18.6 5 7 0.037 22 5.1 0.1 3 14 314 325 312 330 0.87 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF514-201 - 400 5.1e-08 32.7 18.6 6 7 0.045 26 4.8 0.0 3 14 342 353 340 364 0.82 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF514-201 - 400 5.1e-08 32.7 18.6 7 7 0.0019 1.1 9.2 0.0 3 19 370 386 368 390 0.91 Probable zinc-ribbon domain zf-C2H2_jaz PF12171.8 27 ZNF514-201 - 400 1.5e-07 31.5 22.6 1 7 0.11 61 4.1 1.0 4 22 206 224 205 224 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF514-201 - 400 1.5e-07 31.5 22.6 2 7 0.019 11 6.4 0.1 2 24 232 254 231 254 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF514-201 - 400 1.5e-07 31.5 22.6 3 7 0.015 8.7 6.8 0.0 2 22 260 280 259 280 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF514-201 - 400 1.5e-07 31.5 22.6 4 7 0.026 15 6.0 0.2 2 24 288 310 287 310 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF514-201 - 400 1.5e-07 31.5 22.6 5 7 0.0089 5.1 7.5 0.0 2 22 316 336 315 336 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF514-201 - 400 1.5e-07 31.5 22.6 6 7 0.24 1.4e+02 2.9 0.2 2 22 344 364 343 364 0.89 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF514-201 - 400 1.5e-07 31.5 22.6 7 7 0.0043 2.5 8.5 0.2 2 24 372 394 371 397 0.94 Zinc-finger double-stranded RNA-binding zf-C2HC_2 PF13913.6 25 ZNF514-201 - 400 1.7e-07 30.9 36.2 1 7 0.84 4.8e+02 0.8 6.9 5 22 206 224 202 225 0.91 zinc-finger of a C2HC-type zf-C2HC_2 PF13913.6 25 ZNF514-201 - 400 1.7e-07 30.9 36.2 2 7 0.0042 2.5 8.1 0.1 5 22 234 252 232 253 0.90 zinc-finger of a C2HC-type zf-C2HC_2 PF13913.6 25 ZNF514-201 - 400 1.7e-07 30.9 36.2 3 7 0.072 42 4.2 0.1 5 20 262 278 260 280 0.74 zinc-finger of a C2HC-type zf-C2HC_2 PF13913.6 25 ZNF514-201 - 400 1.7e-07 30.9 36.2 4 7 0.00088 0.51 10.3 0.3 4 22 289 308 288 309 0.90 zinc-finger of a C2HC-type zf-C2HC_2 PF13913.6 25 ZNF514-201 - 400 1.7e-07 30.9 36.2 5 7 0.0057 3.3 7.7 0.1 4 20 317 334 316 336 0.77 zinc-finger of a C2HC-type zf-C2HC_2 PF13913.6 25 ZNF514-201 - 400 1.7e-07 30.9 36.2 6 7 0.0013 0.73 9.8 0.2 4 17 345 359 344 364 0.74 zinc-finger of a C2HC-type zf-C2HC_2 PF13913.6 25 ZNF514-201 - 400 1.7e-07 30.9 36.2 7 7 0.0056 3.2 7.7 0.3 4 22 373 392 372 393 0.89 zinc-finger of a C2HC-type XPA_N PF01286.18 32 ZNF514-201 - 400 6.8e-07 29.2 25.4 1 7 0.12 69 3.6 3.1 3 12 205 214 204 225 0.87 XPA protein N-terminal XPA_N PF01286.18 32 ZNF514-201 - 400 6.8e-07 29.2 25.4 2 7 0.16 95 3.2 0.0 3 12 233 242 231 250 0.86 XPA protein N-terminal XPA_N PF01286.18 32 ZNF514-201 - 400 6.8e-07 29.2 25.4 3 7 0.0086 5 7.3 0.1 3 14 261 272 259 279 0.91 XPA protein N-terminal XPA_N PF01286.18 32 ZNF514-201 - 400 6.8e-07 29.2 25.4 4 7 0.023 13 5.9 0.0 3 12 289 298 287 306 0.81 XPA protein N-terminal XPA_N PF01286.18 32 ZNF514-201 - 400 6.8e-07 29.2 25.4 5 7 0.0047 2.7 8.1 0.2 3 14 317 328 315 332 0.92 XPA protein N-terminal XPA_N PF01286.18 32 ZNF514-201 - 400 6.8e-07 29.2 25.4 6 7 0.012 7.2 6.7 0.1 3 14 345 356 343 365 0.83 XPA protein N-terminal XPA_N PF01286.18 32 ZNF514-201 - 400 6.8e-07 29.2 25.4 7 7 0.024 14 5.8 0.0 3 12 373 382 371 385 0.88 XPA protein N-terminal # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF514-201.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF514-201.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF514-201.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF514-201.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF514-201.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:07:46 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZNF514-202 - 473 3.3e-52 172.7 59.4 1 8 0.047 30 5.3 4.0 6 24 268 286 265 287 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF514-202 - 473 3.3e-52 172.7 59.4 2 8 7e-12 4.5e-09 36.3 2.3 2 26 292 316 291 316 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF514-202 - 473 3.3e-52 172.7 59.4 3 8 1e-11 6.4e-09 35.8 0.3 2 25 320 343 319 344 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF514-202 - 473 3.3e-52 172.7 59.4 4 8 3e-10 1.9e-07 31.2 1.5 2 26 348 372 347 372 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF514-202 - 473 3.3e-52 172.7 59.4 5 8 4.5e-11 2.9e-08 33.8 0.6 2 25 376 399 375 400 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF514-202 - 473 3.3e-52 172.7 59.4 6 8 6.3e-10 4e-07 30.2 0.9 2 25 404 427 403 428 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF514-202 - 473 3.3e-52 172.7 59.4 7 8 1.4e-10 8.8e-08 32.2 2.4 1 26 431 456 431 456 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF514-202 - 473 3.3e-52 172.7 59.4 8 8 0.19 1.2e+02 3.4 0.2 2 13 460 471 459 473 0.87 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZNF514-202 - 473 1.7e-37 125.8 64.1 1 7 3.4e-05 0.022 15.2 8.5 2 21 278 297 277 299 0.94 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF514-202 - 473 1.7e-37 125.8 64.1 2 7 3e-08 1.9e-05 24.8 0.8 1 23 305 327 305 327 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF514-202 - 473 1.7e-37 125.8 64.1 3 7 9.6e-08 6.2e-05 23.2 0.7 1 23 333 355 333 355 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF514-202 - 473 1.7e-37 125.8 64.1 4 7 1.5e-08 9.7e-06 25.8 1.9 1 23 361 383 361 383 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF514-202 - 473 1.7e-37 125.8 64.1 5 7 4.1e-08 2.6e-05 24.4 1.2 1 23 389 411 389 411 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF514-202 - 473 1.7e-37 125.8 64.1 6 7 4e-08 2.5e-05 24.5 2.8 1 23 417 439 417 439 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF514-202 - 473 1.7e-37 125.8 64.1 7 7 3.2e-08 2e-05 24.8 1.1 1 23 445 467 445 467 0.99 Zinc finger, C2H2 type KRAB PF01352.27 42 ZNF514-202 - 473 9.5e-24 82.8 0.3 1 1 2.5e-26 1.6e-23 82.1 0.3 1 42 73 114 73 114 0.98 KRAB box zf-C2H2_4 PF13894.6 24 ZNF514-202 - 473 1.3e-18 66.1 56.0 1 7 0.0098 6.2 7.9 8.0 2 21 278 297 277 299 0.91 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF514-202 - 473 1.3e-18 66.1 56.0 2 7 7.7e-05 0.05 14.5 0.6 1 23 305 327 305 328 0.97 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF514-202 - 473 1.3e-18 66.1 56.0 3 7 0.00013 0.083 13.8 0.9 1 23 333 355 333 356 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF514-202 - 473 1.3e-18 66.1 56.0 4 7 8.5e-05 0.054 14.3 1.2 1 23 361 383 361 384 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF514-202 - 473 1.3e-18 66.1 56.0 5 7 9.7e-06 0.0062 17.3 1.0 1 23 389 411 389 412 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF514-202 - 473 1.3e-18 66.1 56.0 6 7 3.9e-05 0.025 15.4 2.0 1 23 417 439 417 440 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF514-202 - 473 1.3e-18 66.1 56.0 7 7 8e-05 0.051 14.4 0.6 1 23 445 467 445 468 0.96 C2H2-type zinc finger zf-C2H2_11 PF16622.5 29 ZNF514-202 - 473 9e-15 54.1 39.5 1 7 0.0009 0.58 10.0 5.8 3 24 275 296 273 298 0.91 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF514-202 - 473 9e-15 54.1 39.5 2 7 0.0052 3.3 7.5 0.2 6 24 306 324 303 326 0.91 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF514-202 - 473 9e-15 54.1 39.5 3 7 0.0016 1 9.1 0.5 6 23 334 351 331 354 0.87 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF514-202 - 473 9e-15 54.1 39.5 4 7 0.00076 0.49 10.2 0.2 5 24 361 380 358 382 0.91 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF514-202 - 473 9e-15 54.1 39.5 5 7 0.00044 0.28 11.0 0.3 6 23 390 407 387 410 0.86 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF514-202 - 473 9e-15 54.1 39.5 6 7 6.2e-05 0.04 13.7 0.6 5 24 417 436 414 438 0.91 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF514-202 - 473 9e-15 54.1 39.5 7 7 6.8e-05 0.043 13.6 0.1 5 24 445 464 442 465 0.92 zinc-finger C2H2-type zf-C2H2_6 PF13912.6 27 ZNF514-202 - 473 1.1e-12 47.6 55.2 1 7 6.4e-05 0.041 13.9 5.9 3 24 278 299 278 302 0.95 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF514-202 - 473 1.1e-12 47.6 55.2 2 7 3.1e-05 0.02 14.9 0.7 2 24 305 327 305 330 0.96 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF514-202 - 473 1.1e-12 47.6 55.2 3 7 0.0022 1.4 9.0 0.3 2 12 333 343 333 348 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF514-202 - 473 1.1e-12 47.6 55.2 4 7 5.5e-05 0.035 14.1 2.0 2 24 361 383 361 386 0.95 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF514-202 - 473 1.1e-12 47.6 55.2 5 7 0.0051 3.2 7.8 0.8 2 13 389 400 389 411 0.81 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF514-202 - 473 1.1e-12 47.6 55.2 6 7 0.04 26 5.0 2.1 2 20 417 435 417 440 0.83 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF514-202 - 473 1.1e-12 47.6 55.2 7 7 6.8e-05 0.044 13.8 1.7 2 24 445 467 445 470 0.96 C2H2-type zinc finger zf-trcl PF13451.6 48 ZNF514-202 - 473 1.9e-07 30.9 18.6 1 7 0.019 12 5.9 1.4 3 17 275 289 273 292 0.86 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF514-202 - 473 1.9e-07 30.9 18.6 2 7 0.044 28 4.7 0.0 3 14 303 314 301 318 0.88 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF514-202 - 473 1.9e-07 30.9 18.6 3 7 0.15 97 3.0 0.1 3 14 331 342 329 347 0.86 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF514-202 - 473 1.9e-07 30.9 18.6 4 7 0.022 14 5.6 0.0 3 17 359 373 357 376 0.84 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF514-202 - 473 1.9e-07 30.9 18.6 5 7 0.041 26 4.8 0.1 3 14 387 398 385 403 0.87 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF514-202 - 473 1.9e-07 30.9 18.6 6 7 0.05 32 4.5 0.0 3 14 415 426 413 437 0.82 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF514-202 - 473 1.9e-07 30.9 18.6 7 7 0.0021 1.3 8.9 0.0 3 19 443 459 441 463 0.91 Probable zinc-ribbon domain zf-C2H2_jaz PF12171.8 27 ZNF514-202 - 473 6.1e-07 29.6 22.6 1 7 0.12 74 3.8 1.0 4 22 279 297 278 297 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF514-202 - 473 6.1e-07 29.6 22.6 2 7 0.021 14 6.1 0.1 2 24 305 327 304 327 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF514-202 - 473 6.1e-07 29.6 22.6 3 7 0.017 11 6.5 0.0 2 22 333 353 332 353 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF514-202 - 473 6.1e-07 29.6 22.6 4 7 0.029 18 5.7 0.2 2 24 361 383 360 383 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF514-202 - 473 6.1e-07 29.6 22.6 5 7 0.0098 6.3 7.2 0.0 2 22 389 409 388 409 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF514-202 - 473 6.1e-07 29.6 22.6 6 7 0.26 1.7e+02 2.7 0.2 2 22 417 437 416 437 0.89 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF514-202 - 473 6.1e-07 29.6 22.6 7 7 0.0047 3 8.2 0.2 2 24 445 467 444 470 0.94 Zinc-finger double-stranded RNA-binding zf-C2HC_2 PF13913.6 25 ZNF514-202 - 473 9.5e-07 28.6 36.6 1 7 1.2 7.9e+02 0.1 7.2 5 22 279 297 277 298 0.90 zinc-finger of a C2HC-type zf-C2HC_2 PF13913.6 25 ZNF514-202 - 473 9.5e-07 28.6 36.6 2 7 0.0047 3 7.8 0.1 5 22 307 325 305 326 0.90 zinc-finger of a C2HC-type zf-C2HC_2 PF13913.6 25 ZNF514-202 - 473 9.5e-07 28.6 36.6 3 7 0.079 51 3.9 0.1 5 20 335 351 333 353 0.74 zinc-finger of a C2HC-type zf-C2HC_2 PF13913.6 25 ZNF514-202 - 473 9.5e-07 28.6 36.6 4 7 0.00097 0.62 10.0 0.3 4 22 362 381 361 382 0.90 zinc-finger of a C2HC-type zf-C2HC_2 PF13913.6 25 ZNF514-202 - 473 9.5e-07 28.6 36.6 5 7 0.0063 4 7.4 0.1 4 20 390 407 389 409 0.77 zinc-finger of a C2HC-type zf-C2HC_2 PF13913.6 25 ZNF514-202 - 473 9.5e-07 28.6 36.6 6 7 0.0014 0.89 9.5 0.2 4 16 418 431 417 437 0.74 zinc-finger of a C2HC-type zf-C2HC_2 PF13913.6 25 ZNF514-202 - 473 9.5e-07 28.6 36.6 7 7 0.0062 3.9 7.5 0.3 4 22 446 465 445 466 0.89 zinc-finger of a C2HC-type # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF514-202.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF514-202.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF514-202.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF514-202.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF514-202.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:07:46 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF514-203.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF514-203.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF514-203.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF514-203.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF514-203.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:07:47 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZNF514-204 - 400 6.1e-53 175.0 59.4 1 8 0.042 24 5.6 4.0 6 24 195 213 192 214 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF514-204 - 400 6.1e-53 175.0 59.4 2 8 6.3e-12 3.7e-09 36.6 2.3 2 26 219 243 218 243 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF514-204 - 400 6.1e-53 175.0 59.4 3 8 9e-12 5.2e-09 36.1 0.3 2 25 247 270 246 271 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF514-204 - 400 6.1e-53 175.0 59.4 4 8 2.7e-10 1.6e-07 31.4 1.5 2 26 275 299 274 299 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF514-204 - 400 6.1e-53 175.0 59.4 5 8 4.1e-11 2.3e-08 34.1 0.6 2 25 303 326 302 327 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF514-204 - 400 6.1e-53 175.0 59.4 6 8 5.7e-10 3.3e-07 30.4 0.9 2 25 331 354 330 355 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF514-204 - 400 6.1e-53 175.0 59.4 7 8 1.2e-10 7.2e-08 32.5 2.4 1 26 358 383 358 383 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF514-204 - 400 6.1e-53 175.0 59.4 8 8 0.17 1e+02 3.6 0.2 2 13 387 398 386 400 0.87 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZNF514-204 - 400 3.8e-38 127.8 64.1 1 7 3.1e-05 0.018 15.5 8.5 2 21 205 224 204 226 0.94 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF514-204 - 400 3.8e-38 127.8 64.1 2 7 2.7e-08 1.6e-05 25.1 0.8 1 23 232 254 232 254 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF514-204 - 400 3.8e-38 127.8 64.1 3 7 8.7e-08 5e-05 23.5 0.7 1 23 260 282 260 282 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF514-204 - 400 3.8e-38 127.8 64.1 4 7 1.4e-08 7.9e-06 26.1 1.9 1 23 288 310 288 310 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF514-204 - 400 3.8e-38 127.8 64.1 5 7 3.7e-08 2.1e-05 24.7 1.2 1 23 316 338 316 338 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF514-204 - 400 3.8e-38 127.8 64.1 6 7 3.6e-08 2.1e-05 24.7 2.8 1 23 344 366 344 366 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF514-204 - 400 3.8e-38 127.8 64.1 7 7 2.9e-08 1.7e-05 25.0 1.1 1 23 372 394 372 394 0.99 Zinc finger, C2H2 type KRAB PF01352.27 42 ZNF514-204 - 400 1.6e-23 82.0 0.3 1 1 4.8e-26 2.8e-23 81.3 0.3 2 42 1 41 1 41 0.99 KRAB box zf-C2H2_4 PF13894.6 24 ZNF514-204 - 400 2.8e-19 68.1 56.0 1 7 0.0088 5.1 8.2 8.0 2 21 205 224 204 226 0.91 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF514-204 - 400 2.8e-19 68.1 56.0 2 7 7e-05 0.04 14.8 0.6 1 23 232 254 232 255 0.97 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF514-204 - 400 2.8e-19 68.1 56.0 3 7 0.00012 0.067 14.1 0.9 1 23 260 282 260 283 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF514-204 - 400 2.8e-19 68.1 56.0 4 7 7.6e-05 0.044 14.6 1.2 1 23 288 310 288 311 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF514-204 - 400 2.8e-19 68.1 56.0 5 7 8.7e-06 0.005 17.6 1.0 1 23 316 338 316 339 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF514-204 - 400 2.8e-19 68.1 56.0 6 7 3.5e-05 0.02 15.7 2.0 1 23 344 366 344 367 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF514-204 - 400 2.8e-19 68.1 56.0 7 7 7.2e-05 0.042 14.7 0.6 1 23 372 394 372 395 0.96 C2H2-type zinc finger zf-C2H2_11 PF16622.5 29 ZNF514-204 - 400 2.2e-15 56.1 39.5 1 7 0.00082 0.47 10.3 5.8 3 24 202 223 200 225 0.91 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF514-204 - 400 2.2e-15 56.1 39.5 2 7 0.0047 2.7 7.8 0.2 6 24 233 251 230 253 0.91 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF514-204 - 400 2.2e-15 56.1 39.5 3 7 0.0015 0.86 9.4 0.5 6 23 261 278 258 281 0.87 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF514-204 - 400 2.2e-15 56.1 39.5 4 7 0.00069 0.4 10.5 0.2 5 24 288 307 285 309 0.91 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF514-204 - 400 2.2e-15 56.1 39.5 5 7 0.0004 0.23 11.3 0.3 6 23 317 334 314 337 0.86 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF514-204 - 400 2.2e-15 56.1 39.5 6 7 5.6e-05 0.032 14.0 0.6 5 24 344 363 341 365 0.91 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF514-204 - 400 2.2e-15 56.1 39.5 7 7 6.1e-05 0.035 13.8 0.1 5 24 372 391 369 392 0.92 zinc-finger C2H2-type zf-C2H2_6 PF13912.6 27 ZNF514-204 - 400 2.6e-13 49.6 55.2 1 7 5.7e-05 0.033 14.2 5.9 3 24 205 226 205 229 0.95 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF514-204 - 400 2.6e-13 49.6 55.2 2 7 2.8e-05 0.016 15.2 0.7 2 24 232 254 232 257 0.96 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF514-204 - 400 2.6e-13 49.6 55.2 3 7 0.002 1.1 9.3 0.3 2 12 260 270 260 275 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF514-204 - 400 2.6e-13 49.6 55.2 4 7 4.9e-05 0.029 14.4 2.0 2 24 288 310 288 313 0.95 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF514-204 - 400 2.6e-13 49.6 55.2 5 7 0.0046 2.7 8.1 0.8 2 13 316 327 316 338 0.81 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF514-204 - 400 2.6e-13 49.6 55.2 6 7 0.037 21 5.2 2.1 2 20 344 362 344 367 0.83 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF514-204 - 400 2.6e-13 49.6 55.2 7 7 6.1e-05 0.036 14.1 1.7 2 24 372 394 372 397 0.96 C2H2-type zinc finger zf-trcl PF13451.6 48 ZNF514-204 - 400 5.1e-08 32.7 18.6 1 7 0.017 10 6.1 1.4 3 17 202 216 200 219 0.86 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF514-204 - 400 5.1e-08 32.7 18.6 2 7 0.04 23 5.0 0.0 3 14 230 241 228 245 0.88 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF514-204 - 400 5.1e-08 32.7 18.6 3 7 0.14 80 3.2 0.1 3 14 258 269 256 274 0.86 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF514-204 - 400 5.1e-08 32.7 18.6 4 7 0.02 12 5.9 0.0 3 17 286 300 284 303 0.84 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF514-204 - 400 5.1e-08 32.7 18.6 5 7 0.037 22 5.1 0.1 3 14 314 325 312 330 0.87 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF514-204 - 400 5.1e-08 32.7 18.6 6 7 0.045 26 4.8 0.0 3 14 342 353 340 364 0.82 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF514-204 - 400 5.1e-08 32.7 18.6 7 7 0.0019 1.1 9.2 0.0 3 19 370 386 368 390 0.91 Probable zinc-ribbon domain zf-C2H2_jaz PF12171.8 27 ZNF514-204 - 400 1.5e-07 31.5 22.6 1 7 0.11 61 4.1 1.0 4 22 206 224 205 224 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF514-204 - 400 1.5e-07 31.5 22.6 2 7 0.019 11 6.4 0.1 2 24 232 254 231 254 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF514-204 - 400 1.5e-07 31.5 22.6 3 7 0.015 8.7 6.8 0.0 2 22 260 280 259 280 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF514-204 - 400 1.5e-07 31.5 22.6 4 7 0.026 15 6.0 0.2 2 24 288 310 287 310 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF514-204 - 400 1.5e-07 31.5 22.6 5 7 0.0089 5.1 7.5 0.0 2 22 316 336 315 336 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF514-204 - 400 1.5e-07 31.5 22.6 6 7 0.24 1.4e+02 2.9 0.2 2 22 344 364 343 364 0.89 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF514-204 - 400 1.5e-07 31.5 22.6 7 7 0.0043 2.5 8.5 0.2 2 24 372 394 371 397 0.94 Zinc-finger double-stranded RNA-binding zf-C2HC_2 PF13913.6 25 ZNF514-204 - 400 1.7e-07 30.9 36.2 1 7 0.84 4.8e+02 0.8 6.9 5 22 206 224 202 225 0.91 zinc-finger of a C2HC-type zf-C2HC_2 PF13913.6 25 ZNF514-204 - 400 1.7e-07 30.9 36.2 2 7 0.0042 2.5 8.1 0.1 5 22 234 252 232 253 0.90 zinc-finger of a C2HC-type zf-C2HC_2 PF13913.6 25 ZNF514-204 - 400 1.7e-07 30.9 36.2 3 7 0.072 42 4.2 0.1 5 20 262 278 260 280 0.74 zinc-finger of a C2HC-type zf-C2HC_2 PF13913.6 25 ZNF514-204 - 400 1.7e-07 30.9 36.2 4 7 0.00088 0.51 10.3 0.3 4 22 289 308 288 309 0.90 zinc-finger of a C2HC-type zf-C2HC_2 PF13913.6 25 ZNF514-204 - 400 1.7e-07 30.9 36.2 5 7 0.0057 3.3 7.7 0.1 4 20 317 334 316 336 0.77 zinc-finger of a C2HC-type zf-C2HC_2 PF13913.6 25 ZNF514-204 - 400 1.7e-07 30.9 36.2 6 7 0.0013 0.73 9.8 0.2 4 17 345 359 344 364 0.74 zinc-finger of a C2HC-type zf-C2HC_2 PF13913.6 25 ZNF514-204 - 400 1.7e-07 30.9 36.2 7 7 0.0056 3.2 7.7 0.3 4 22 373 392 372 393 0.89 zinc-finger of a C2HC-type XPA_N PF01286.18 32 ZNF514-204 - 400 6.8e-07 29.2 25.4 1 7 0.12 69 3.6 3.1 3 12 205 214 204 225 0.87 XPA protein N-terminal XPA_N PF01286.18 32 ZNF514-204 - 400 6.8e-07 29.2 25.4 2 7 0.16 95 3.2 0.0 3 12 233 242 231 250 0.86 XPA protein N-terminal XPA_N PF01286.18 32 ZNF514-204 - 400 6.8e-07 29.2 25.4 3 7 0.0086 5 7.3 0.1 3 14 261 272 259 279 0.91 XPA protein N-terminal XPA_N PF01286.18 32 ZNF514-204 - 400 6.8e-07 29.2 25.4 4 7 0.023 13 5.9 0.0 3 12 289 298 287 306 0.81 XPA protein N-terminal XPA_N PF01286.18 32 ZNF514-204 - 400 6.8e-07 29.2 25.4 5 7 0.0047 2.7 8.1 0.2 3 14 317 328 315 332 0.92 XPA protein N-terminal XPA_N PF01286.18 32 ZNF514-204 - 400 6.8e-07 29.2 25.4 6 7 0.012 7.2 6.7 0.1 3 14 345 356 343 365 0.83 XPA protein N-terminal XPA_N PF01286.18 32 ZNF514-204 - 400 6.8e-07 29.2 25.4 7 7 0.024 14 5.8 0.0 3 12 373 382 371 385 0.88 XPA protein N-terminal # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF514-204.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF514-204.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF514-204.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF514-204.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF514-204.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:07:47 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF518A-201.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF518A-201.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF518A-201.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF518A-201.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF518A-201.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:07:47 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF518A-202.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF518A-202.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF518A-202.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF518A-202.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF518A-202.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:07:48 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF518A-203.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF518A-203.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF518A-203.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF518A-203.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF518A-203.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:07:48 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF518A-204.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF518A-204.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF518A-204.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF518A-204.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF518A-204.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:07:48 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF518A-205.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF518A-205.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF518A-205.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF518A-205.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF518A-205.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:07:49 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF518A-206.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF518A-206.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF518A-206.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF518A-206.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF518A-206.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:07:49 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF518A-207.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF518A-207.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF518A-207.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF518A-207.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF518A-207.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:07:50 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF518A-208.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF518A-208.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF518A-208.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF518A-208.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF518A-208.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:07:50 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF518A-209.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF518A-209.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF518A-209.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF518A-209.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF518A-209.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:07:50 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF518A-210.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF518A-210.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF518A-210.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF518A-210.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF518A-210.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:07:51 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- KRAB PF01352.27 42 ZNF519-201 - 67 1.2e-26 92.0 0.2 1 1 1e-30 1.8e-26 91.5 0.2 1 41 3 43 3 43 0.98 KRAB box # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF519-201.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF519-201.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF519-201.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF519-201.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF519-201.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:07:51 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF519-202.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF519-202.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF519-202.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF519-202.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF519-202.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:07:51 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- KRAB PF01352.27 42 ZNF519-203 - 82 6.9e-27 92.8 0.1 1 1 5e-31 9e-27 92.5 0.1 1 42 3 44 3 44 0.97 KRAB box # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF519-203.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF519-203.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF519-203.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF519-203.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF519-203.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:07:52 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF519-204.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF519-204.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF519-204.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF519-204.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF519-204.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:07:52 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF519-205.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF519-205.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF519-205.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF519-205.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF519-205.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:07:52 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF519-206.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF519-206.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF519-206.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF519-206.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF519-206.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:07:53 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZNF519-207 - 540 7.7e-76 247.4 102.9 1 13 0.014 11 6.6 2.2 3 24 169 190 167 192 0.81 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF519-207 - 540 7.7e-76 247.4 102.9 2 13 0.2 1.7e+02 2.9 0.0 9 23 203 217 201 219 0.85 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF519-207 - 540 7.7e-76 247.4 102.9 3 13 0.16 1.3e+02 3.3 0.0 4 26 250 276 249 276 0.84 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF519-207 - 540 7.7e-76 247.4 102.9 4 13 4.3e-10 3.5e-07 30.3 3.8 5 25 282 302 281 303 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF519-207 - 540 7.7e-76 247.4 102.9 5 13 1.5e-11 1.2e-08 34.9 1.8 1 25 306 330 306 331 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF519-207 - 540 7.7e-76 247.4 102.9 6 13 3.4e-10 2.8e-07 30.7 0.4 2 25 335 358 334 359 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF519-207 - 540 7.7e-76 247.4 102.9 7 13 1.6e-11 1.3e-08 34.9 1.0 2 25 363 386 362 387 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF519-207 - 540 7.7e-76 247.4 102.9 8 13 5.8e-11 4.7e-08 33.1 1.9 3 25 392 414 390 415 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF519-207 - 540 7.7e-76 247.4 102.9 9 13 6.2e-10 5e-07 29.9 4.1 1 25 418 442 418 443 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF519-207 - 540 7.7e-76 247.4 102.9 10 13 4.3e-11 3.5e-08 33.5 1.1 1 24 446 469 446 470 0.97 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF519-207 - 540 7.7e-76 247.4 102.9 11 13 6e-11 4.9e-08 33.1 3.3 1 26 474 499 474 499 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF519-207 - 540 7.7e-76 247.4 102.9 12 13 8.6e-12 7e-09 35.7 2.4 1 25 502 526 502 527 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF519-207 - 540 7.7e-76 247.4 102.9 13 13 6.9 5.6e+03 -1.9 0.3 2 10 531 539 531 540 0.90 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZNF519-207 - 540 2.2e-56 185.3 95.5 1 13 2.7 2.2e+03 -0.5 2.4 9 23 161 175 154 175 0.86 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF519-207 - 540 2.2e-56 185.3 95.5 2 13 0.00082 0.67 10.5 0.3 1 16 181 196 181 197 0.93 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF519-207 - 540 2.2e-56 185.3 95.5 3 13 0.27 2.2e+02 2.6 0.0 5 21 213 229 211 230 0.91 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF519-207 - 540 2.2e-56 185.3 95.5 4 13 0.6 4.9e+02 1.5 0.3 2 19 238 255 237 258 0.83 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF519-207 - 540 2.2e-56 185.3 95.5 5 13 1.8e-08 1.5e-05 25.2 3.2 1 23 292 314 292 314 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF519-207 - 540 2.2e-56 185.3 95.5 6 13 2.2e-08 1.8e-05 25.0 0.9 1 23 320 342 320 342 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF519-207 - 540 2.2e-56 185.3 95.5 7 13 2.6e-08 2.1e-05 24.7 0.5 1 23 348 370 348 370 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF519-207 - 540 2.2e-56 185.3 95.5 8 13 3.1e-08 2.5e-05 24.5 1.9 1 23 376 398 376 398 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF519-207 - 540 2.2e-56 185.3 95.5 9 13 9.4e-10 7.7e-07 29.2 2.0 1 23 404 426 404 426 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF519-207 - 540 2.2e-56 185.3 95.5 10 13 4.4e-09 3.6e-06 27.1 2.4 1 23 432 454 432 454 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF519-207 - 540 2.2e-56 185.3 95.5 11 13 4.1e-06 0.0034 17.8 0.5 1 23 460 482 460 482 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF519-207 - 540 2.2e-56 185.3 95.5 12 13 7.7e-10 6.3e-07 29.5 3.1 1 23 488 510 488 510 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF519-207 - 540 2.2e-56 185.3 95.5 13 13 1e-08 8.3e-06 26.0 0.8 1 23 516 538 516 538 0.98 Zinc finger, C2H2 type KRAB PF01352.27 42 ZNF519-207 - 540 3e-25 87.6 0.2 1 1 9.6e-28 7.9e-25 86.2 0.2 2 41 4 43 3 43 0.98 KRAB box zf-C2H2_4 PF13894.6 24 ZNF519-207 - 540 2.7e-19 68.2 95.7 1 11 0.15 1.3e+02 3.9 0.4 1 15 181 195 181 198 0.80 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF519-207 - 540 2.7e-19 68.2 95.7 2 11 3.3 2.7e+03 -0.2 0.4 6 19 243 255 238 257 0.68 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF519-207 - 540 2.7e-19 68.2 95.7 3 11 0.00019 0.16 12.9 2.5 1 23 292 314 292 315 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF519-207 - 540 2.7e-19 68.2 95.7 4 11 5.7e-05 0.047 14.6 0.7 1 23 320 342 320 343 0.91 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF519-207 - 540 2.7e-19 68.2 95.7 5 11 5.8e-05 0.047 14.5 0.4 1 23 348 370 348 371 0.91 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF519-207 - 540 2.7e-19 68.2 95.7 6 11 9.7e-05 0.079 13.8 1.4 1 23 376 398 376 399 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF519-207 - 540 2.7e-19 68.2 95.7 7 11 2.1e-05 0.017 15.9 1.6 1 23 404 426 404 427 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF519-207 - 540 2.7e-19 68.2 95.7 8 11 2.1e-05 0.017 15.9 1.7 1 23 432 454 432 455 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF519-207 - 540 2.7e-19 68.2 95.7 9 11 0.005 4.1 8.5 0.8 1 23 460 482 460 483 0.86 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF519-207 - 540 2.7e-19 68.2 95.7 10 11 1.3e-05 0.011 16.5 2.4 1 23 488 510 488 511 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF519-207 - 540 2.7e-19 68.2 95.7 11 11 1.9e-05 0.015 16.1 0.6 1 23 516 538 516 539 0.95 C2H2-type zinc finger XPA_N PF01286.18 32 ZNF519-207 - 540 1.6e-14 53.6 39.5 1 10 0.035 29 4.8 0.2 3 14 182 193 180 196 0.88 XPA protein N-terminal XPA_N PF01286.18 32 ZNF519-207 - 540 1.6e-14 53.6 39.5 2 10 0.0094 7.7 6.7 0.3 3 14 293 304 291 309 0.89 XPA protein N-terminal XPA_N PF01286.18 32 ZNF519-207 - 540 1.6e-14 53.6 39.5 3 10 0.0016 1.3 9.1 0.1 3 18 321 337 319 339 0.79 XPA protein N-terminal XPA_N PF01286.18 32 ZNF519-207 - 540 1.6e-14 53.6 39.5 4 10 0.00086 0.7 10.0 0.1 3 18 349 365 347 367 0.79 XPA protein N-terminal XPA_N PF01286.18 32 ZNF519-207 - 540 1.6e-14 53.6 39.5 5 10 0.0011 0.86 9.7 0.1 3 18 377 392 375 394 0.87 XPA protein N-terminal XPA_N PF01286.18 32 ZNF519-207 - 540 1.6e-14 53.6 39.5 6 10 0.0081 6.6 6.9 0.1 3 12 405 414 403 421 0.88 XPA protein N-terminal XPA_N PF01286.18 32 ZNF519-207 - 540 1.6e-14 53.6 39.5 7 10 0.012 9.7 6.3 0.2 3 12 433 442 432 448 0.91 XPA protein N-terminal XPA_N PF01286.18 32 ZNF519-207 - 540 1.6e-14 53.6 39.5 8 10 0.0081 6.6 6.9 0.2 3 11 461 469 460 476 0.93 XPA protein N-terminal XPA_N PF01286.18 32 ZNF519-207 - 540 1.6e-14 53.6 39.5 9 10 0.0018 1.5 9.0 0.2 3 14 489 500 488 506 0.87 XPA protein N-terminal XPA_N PF01286.18 32 ZNF519-207 - 540 1.6e-14 53.6 39.5 10 10 0.01 8.3 6.6 0.2 3 12 517 526 515 533 0.90 XPA protein N-terminal zf-C2H2_jaz PF12171.8 27 ZNF519-207 - 540 6.4e-14 51.8 60.9 1 11 0.68 5.6e+02 1.0 1.4 2 11 181 190 180 194 0.91 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF519-207 - 540 6.4e-14 51.8 60.9 2 11 7.2 5.8e+03 -2.2 1.0 18 25 249 256 249 256 0.84 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF519-207 - 540 6.4e-14 51.8 60.9 3 11 0.0022 1.8 9.0 2.1 2 22 292 312 291 312 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF519-207 - 540 6.4e-14 51.8 60.9 4 11 0.00099 0.81 10.1 0.1 2 22 320 340 319 340 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF519-207 - 540 6.4e-14 51.8 60.9 5 11 0.0016 1.3 9.4 0.1 2 22 348 368 347 368 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF519-207 - 540 6.4e-14 51.8 60.9 6 11 0.00093 0.76 10.1 0.1 2 22 376 396 375 396 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF519-207 - 540 6.4e-14 51.8 60.9 7 11 6.5e-05 0.053 13.8 0.3 2 22 404 424 403 424 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF519-207 - 540 6.4e-14 51.8 60.9 8 11 0.0029 2.4 8.6 0.6 2 22 432 452 431 452 0.91 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF519-207 - 540 6.4e-14 51.8 60.9 9 11 0.025 20 5.6 0.2 2 20 460 478 459 480 0.77 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF519-207 - 540 6.4e-14 51.8 60.9 10 11 0.001 0.84 10.0 0.6 2 22 488 508 488 508 0.95 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF519-207 - 540 6.4e-14 51.8 60.9 11 11 7.7e-05 0.063 13.6 0.1 2 21 516 535 515 536 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_6 PF13912.6 27 ZNF519-207 - 540 2e-12 46.8 84.4 1 10 0.0067 5.5 7.1 2.5 1 11 180 190 180 191 0.95 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF519-207 - 540 2e-12 46.8 84.4 2 10 0.07 57 3.9 4.4 2 13 292 303 292 313 0.89 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF519-207 - 540 2e-12 46.8 84.4 3 10 0.0001 0.085 12.9 1.1 2 22 320 340 320 344 0.86 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF519-207 - 540 2e-12 46.8 84.4 4 10 0.00026 0.21 11.6 0.6 1 22 347 368 347 372 0.85 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF519-207 - 540 2e-12 46.8 84.4 5 10 0.0011 0.86 9.7 0.7 2 12 376 386 376 387 0.92 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF519-207 - 540 2e-12 46.8 84.4 6 10 0.00057 0.47 10.5 1.4 2 20 404 422 404 427 0.79 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF519-207 - 540 2e-12 46.8 84.4 7 10 6.8e-05 0.055 13.5 2.8 1 22 431 452 431 456 0.87 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF519-207 - 540 2e-12 46.8 84.4 8 10 0.16 1.3e+02 2.7 4.6 2 11 460 469 459 481 0.74 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF519-207 - 540 2e-12 46.8 84.4 9 10 0.0015 1.2 9.2 1.9 2 13 488 499 487 511 0.79 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF519-207 - 540 2e-12 46.8 84.4 10 10 0.00052 0.43 10.7 0.4 2 13 516 527 516 538 0.87 C2H2-type zinc finger Zn-ribbon_8 PF09723.10 40 ZNF519-207 - 540 5.2e-12 45.7 52.9 1 9 0.087 71 3.6 0.2 6 16 181 191 180 202 0.83 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF519-207 - 540 5.2e-12 45.7 52.9 2 9 1.4 1.1e+03 -0.2 0.0 9 22 212 225 209 231 0.79 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF519-207 - 540 5.2e-12 45.7 52.9 3 9 3e-05 0.024 14.7 3.2 6 38 292 331 291 332 0.90 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF519-207 - 540 5.2e-12 45.7 52.9 4 9 0.00031 0.25 11.5 4.8 6 38 320 359 319 360 0.88 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF519-207 - 540 5.2e-12 45.7 52.9 5 9 3.5e-05 0.029 14.5 4.6 6 38 348 387 347 388 0.91 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF519-207 - 540 5.2e-12 45.7 52.9 6 9 5.2e-06 0.0043 17.2 3.6 6 38 376 415 375 417 0.91 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF519-207 - 540 5.2e-12 45.7 52.9 7 9 8.5e-05 0.069 13.3 3.7 6 37 404 442 403 443 0.86 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF519-207 - 540 5.2e-12 45.7 52.9 8 9 0.00022 0.18 11.9 4.4 6 34 432 467 430 470 0.90 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF519-207 - 540 5.2e-12 45.7 52.9 9 9 1.5e-05 0.012 15.7 3.6 6 38 488 527 487 529 0.90 Zinc ribbon domain # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF519-207.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF519-207.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF519-207.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF519-207.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF519-207.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:07:53 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF519-208.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF519-208.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF519-208.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF519-208.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF519-208.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:07:53 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- KRAB PF01352.27 42 ZNF519-209 - 50 5.6e-28 96.3 0.1 1 1 3.5e-32 6.3e-28 96.1 0.1 1 42 3 44 3 44 0.98 KRAB box # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF519-209.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF519-209.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF519-209.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF519-209.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF519-209.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:07:54 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF519-210.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF519-210.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF519-210.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF519-210.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF519-210.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:07:54 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF519-211.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF519-211.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF519-211.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF519-211.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF519-211.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:07:54 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- KRAB PF01352.27 42 ZNF519-212 - 50 6.2e-27 93.0 0.2 1 1 4e-31 7.2e-27 92.8 0.2 1 41 3 43 3 43 0.98 KRAB box # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF519-212.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF519-212.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF519-212.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF519-212.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF519-212.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:07:55 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZNF519-213 - 399 6.9e-78 253.9 102.4 1 13 0.013 7.9 7.1 2.2 3 24 28 49 26 51 0.81 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF519-213 - 399 6.9e-78 253.9 102.4 2 13 0.19 1.2e+02 3.4 0.0 9 23 62 76 60 78 0.85 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF519-213 - 399 6.9e-78 253.9 102.4 3 13 0.13 81 3.9 0.0 4 26 109 135 107 135 0.85 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF519-213 - 399 6.9e-78 253.9 102.4 4 13 4e-10 2.4e-07 30.8 3.8 5 25 141 161 140 162 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF519-213 - 399 6.9e-78 253.9 102.4 5 13 1.4e-11 8.5e-09 35.5 1.8 1 25 165 189 165 190 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF519-213 - 399 6.9e-78 253.9 102.4 6 13 3.1e-10 1.9e-07 31.2 0.4 2 25 194 217 193 218 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF519-213 - 399 6.9e-78 253.9 102.4 7 13 1.4e-11 8.9e-09 35.4 1.0 2 25 222 245 221 246 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF519-213 - 399 6.9e-78 253.9 102.4 8 13 5.3e-11 3.3e-08 33.6 1.9 3 25 251 273 249 274 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF519-213 - 399 6.9e-78 253.9 102.4 9 13 5.6e-10 3.5e-07 30.4 4.2 1 25 277 301 277 302 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF519-213 - 399 6.9e-78 253.9 102.4 10 13 4e-11 2.4e-08 34.0 1.1 1 24 305 328 305 329 0.97 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF519-213 - 399 6.9e-78 253.9 102.4 11 13 5.5e-11 3.4e-08 33.6 3.3 1 26 333 358 333 358 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF519-213 - 399 6.9e-78 253.9 102.4 12 13 7.9e-12 4.9e-09 36.2 2.4 1 25 361 385 361 386 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF519-213 - 399 6.9e-78 253.9 102.4 13 13 6.5 4e+03 -1.4 0.3 2 10 390 398 390 399 0.90 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZNF519-213 - 399 3.2e-58 191.1 95.5 1 13 2.5 1.5e+03 -0.1 2.4 9 23 20 34 13 34 0.86 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF519-213 - 399 3.2e-58 191.1 95.5 2 13 0.00076 0.47 11.0 0.3 1 16 40 55 40 56 0.93 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF519-213 - 399 3.2e-58 191.1 95.5 3 13 0.25 1.6e+02 3.1 0.0 5 21 72 88 70 89 0.91 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF519-213 - 399 3.2e-58 191.1 95.5 4 13 0.55 3.4e+02 2.0 0.3 2 19 97 114 96 117 0.83 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF519-213 - 399 3.2e-58 191.1 95.5 5 13 1.6e-08 1e-05 25.7 3.2 1 23 151 173 151 173 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF519-213 - 399 3.2e-58 191.1 95.5 6 13 2e-08 1.2e-05 25.5 0.9 1 23 179 201 179 201 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF519-213 - 399 3.2e-58 191.1 95.5 7 13 2.3e-08 1.5e-05 25.2 0.5 1 23 207 229 207 229 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF519-213 - 399 3.2e-58 191.1 95.5 8 13 2.8e-08 1.7e-05 25.0 1.9 1 23 235 257 235 257 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF519-213 - 399 3.2e-58 191.1 95.5 9 13 8.6e-10 5.3e-07 29.7 2.0 1 23 263 285 263 285 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF519-213 - 399 3.2e-58 191.1 95.5 10 13 4e-09 2.5e-06 27.6 2.4 1 23 291 313 291 313 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF519-213 - 399 3.2e-58 191.1 95.5 11 13 3.8e-06 0.0023 18.3 0.5 1 23 319 341 319 341 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF519-213 - 399 3.2e-58 191.1 95.5 12 13 7e-10 4.3e-07 30.0 3.1 1 23 347 369 347 369 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF519-213 - 399 3.2e-58 191.1 95.5 13 13 9.3e-09 5.8e-06 26.5 0.8 1 23 375 397 375 397 0.98 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZNF519-213 - 399 2.6e-21 74.5 94.6 1 11 0.14 88 4.4 0.4 1 15 40 54 40 57 0.80 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF519-213 - 399 2.6e-21 74.5 94.6 2 11 3 1.9e+03 0.2 0.4 6 19 102 114 97 116 0.68 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF519-213 - 399 2.6e-21 74.5 94.6 3 11 0.00018 0.11 13.4 2.5 1 23 151 173 151 174 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF519-213 - 399 2.6e-21 74.5 94.6 4 11 5.2e-05 0.032 15.1 0.7 1 23 179 201 179 202 0.91 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF519-213 - 399 2.6e-21 74.5 94.6 5 11 5.3e-05 0.032 15.0 0.4 1 23 207 229 207 230 0.91 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF519-213 - 399 2.6e-21 74.5 94.6 6 11 8.8e-05 0.055 14.3 1.4 1 23 235 257 235 258 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF519-213 - 399 2.6e-21 74.5 94.6 7 11 1.9e-05 0.012 16.4 1.6 1 23 263 285 263 286 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF519-213 - 399 2.6e-21 74.5 94.6 8 11 1.9e-05 0.012 16.4 1.7 1 23 291 313 291 314 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF519-213 - 399 2.6e-21 74.5 94.6 9 11 0.0046 2.8 9.0 0.8 1 23 319 341 319 342 0.86 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF519-213 - 399 2.6e-21 74.5 94.6 10 11 1.2e-05 0.0075 17.0 2.4 1 23 347 369 347 370 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF519-213 - 399 2.6e-21 74.5 94.6 11 11 1.7e-05 0.011 16.6 0.6 1 23 375 397 375 398 0.95 C2H2-type zinc finger XPA_N PF01286.18 32 ZNF519-213 - 399 4.6e-16 58.6 39.1 1 10 0.033 20 5.3 0.2 3 14 41 52 39 55 0.88 XPA protein N-terminal XPA_N PF01286.18 32 ZNF519-213 - 399 4.6e-16 58.6 39.1 2 10 0.0088 5.4 7.1 0.3 3 14 152 163 150 168 0.89 XPA protein N-terminal XPA_N PF01286.18 32 ZNF519-213 - 399 4.6e-16 58.6 39.1 3 10 0.0015 0.93 9.6 0.1 3 18 180 196 178 198 0.79 XPA protein N-terminal XPA_N PF01286.18 32 ZNF519-213 - 399 4.6e-16 58.6 39.1 4 10 0.00079 0.49 10.5 0.1 3 18 208 224 206 226 0.79 XPA protein N-terminal XPA_N PF01286.18 32 ZNF519-213 - 399 4.6e-16 58.6 39.1 5 10 0.00099 0.61 10.2 0.1 3 18 236 251 234 253 0.87 XPA protein N-terminal XPA_N PF01286.18 32 ZNF519-213 - 399 4.6e-16 58.6 39.1 6 10 0.0076 4.7 7.3 0.1 3 12 264 273 262 280 0.88 XPA protein N-terminal XPA_N PF01286.18 32 ZNF519-213 - 399 4.6e-16 58.6 39.1 7 10 0.01 6.5 6.9 0.2 3 12 292 301 291 308 0.90 XPA protein N-terminal XPA_N PF01286.18 32 ZNF519-213 - 399 4.6e-16 58.6 39.1 8 10 0.0076 4.7 7.3 0.2 3 11 320 328 319 335 0.93 XPA protein N-terminal XPA_N PF01286.18 32 ZNF519-213 - 399 4.6e-16 58.6 39.1 9 10 0.0017 1 9.4 0.2 3 14 348 359 347 365 0.87 XPA protein N-terminal XPA_N PF01286.18 32 ZNF519-213 - 399 4.6e-16 58.6 39.1 10 10 0.0095 5.9 7.0 0.2 3 12 376 385 374 392 0.90 XPA protein N-terminal zf-C2H2_jaz PF12171.8 27 ZNF519-213 - 399 1.5e-15 57.0 60.9 1 11 0.64 4e+02 1.5 1.4 2 11 40 49 39 53 0.91 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF519-213 - 399 1.5e-15 57.0 60.9 2 11 6.8 4.2e+03 -1.8 1.0 18 25 108 115 108 115 0.84 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF519-213 - 399 1.5e-15 57.0 60.9 3 11 0.002 1.2 9.5 2.1 2 22 151 171 150 171 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF519-213 - 399 1.5e-15 57.0 60.9 4 11 0.00091 0.56 10.6 0.1 2 22 179 199 178 199 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF519-213 - 399 1.5e-15 57.0 60.9 5 11 0.0014 0.88 9.9 0.1 2 22 207 227 206 227 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF519-213 - 399 1.5e-15 57.0 60.9 6 11 0.00086 0.53 10.6 0.1 2 22 235 255 234 255 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF519-213 - 399 1.5e-15 57.0 60.9 7 11 6e-05 0.037 14.3 0.3 2 22 263 283 262 283 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF519-213 - 399 1.5e-15 57.0 60.9 8 11 0.0027 1.7 9.1 0.6 2 22 291 311 290 311 0.91 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF519-213 - 399 1.5e-15 57.0 60.9 9 11 0.023 14 6.1 0.2 2 20 319 337 318 339 0.77 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF519-213 - 399 1.5e-15 57.0 60.9 10 11 0.00095 0.59 10.5 0.6 2 22 347 367 347 367 0.95 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF519-213 - 399 1.5e-15 57.0 60.9 11 11 7.1e-05 0.044 14.1 0.1 2 21 375 394 374 395 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_6 PF13912.6 27 ZNF519-213 - 399 2.8e-13 49.5 87.2 1 10 0.0063 3.9 7.6 2.5 1 11 39 49 39 50 0.95 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF519-213 - 399 2.8e-13 49.5 87.2 2 10 0.069 43 4.3 4.5 2 13 151 162 151 172 0.89 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF519-213 - 399 2.8e-13 49.5 87.2 3 10 9.6e-05 0.059 13.4 1.1 2 22 179 199 179 203 0.86 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF519-213 - 399 2.8e-13 49.5 87.2 4 10 0.00024 0.15 12.1 0.6 1 22 206 227 206 231 0.86 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF519-213 - 399 2.8e-13 49.5 87.2 5 10 0.001 0.62 10.1 0.7 2 12 235 245 235 246 0.92 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF519-213 - 399 2.8e-13 49.5 87.2 6 10 0.00053 0.33 11.0 1.4 2 20 263 281 263 286 0.79 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF519-213 - 399 2.8e-13 49.5 87.2 7 10 6.3e-05 0.039 14.0 2.8 1 22 290 311 290 315 0.87 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF519-213 - 399 2.8e-13 49.5 87.2 8 10 0.21 1.3e+02 2.7 5.0 2 11 319 328 318 340 0.74 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF519-213 - 399 2.8e-13 49.5 87.2 9 10 0.0052 3.2 7.9 3.8 2 13 347 358 346 370 0.79 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF519-213 - 399 2.8e-13 49.5 87.2 10 10 0.00049 0.3 11.1 0.4 2 13 375 386 375 397 0.87 C2H2-type zinc finger Zn-ribbon_8 PF09723.10 40 ZNF519-213 - 399 5.9e-13 48.7 53.6 1 9 0.081 50 4.1 0.2 6 16 40 50 39 61 0.83 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF519-213 - 399 5.9e-13 48.7 53.6 2 9 1.3 7.9e+02 0.3 0.0 9 22 71 84 68 90 0.79 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF519-213 - 399 5.9e-13 48.7 53.6 3 9 3.4e-05 0.021 14.9 3.6 6 38 151 190 150 191 0.90 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF519-213 - 399 5.9e-13 48.7 53.6 4 9 0.00042 0.26 11.5 5.3 6 37 179 217 178 218 0.88 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF519-213 - 399 5.9e-13 48.7 53.6 5 9 2.7e-05 0.017 15.3 4.4 6 38 207 246 206 247 0.91 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF519-213 - 399 5.9e-13 48.7 53.6 6 9 5.4e-06 0.0034 17.5 3.8 6 38 235 274 234 276 0.91 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF519-213 - 399 5.9e-13 48.7 53.6 7 9 6.8e-05 0.042 14.0 3.6 6 38 263 302 262 303 0.86 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF519-213 - 399 5.9e-13 48.7 53.6 8 9 0.00023 0.14 12.3 4.6 6 34 291 326 289 329 0.90 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF519-213 - 399 5.9e-13 48.7 53.6 9 9 1.3e-05 0.0083 16.2 3.6 6 38 347 386 346 388 0.90 Zinc ribbon domain LIM PF00412.22 58 ZNF519-213 - 399 4.6e-07 30.0 54.9 1 9 0.46 2.8e+02 1.8 1.2 16 40 29 53 13 67 0.70 LIM domain LIM PF00412.22 58 ZNF519-213 - 399 4.6e-07 30.0 54.9 2 9 0.00029 0.18 12.0 3.3 1 44 153 196 153 203 0.85 LIM domain LIM PF00412.22 58 ZNF519-213 - 399 4.6e-07 30.0 54.9 3 9 0.0046 2.8 8.2 0.2 26 44 206 224 201 231 0.80 LIM domain LIM PF00412.22 58 ZNF519-213 - 399 4.6e-07 30.0 54.9 4 9 0.00077 0.48 10.7 2.7 1 44 209 252 209 260 0.80 LIM domain LIM PF00412.22 58 ZNF519-213 - 399 4.6e-07 30.0 54.9 5 9 0.0012 0.74 10.1 4.4 1 43 237 279 237 285 0.79 LIM domain LIM PF00412.22 58 ZNF519-213 - 399 4.6e-07 30.0 54.9 6 9 0.0003 0.19 12.0 5.5 1 45 265 309 265 313 0.80 LIM domain LIM PF00412.22 58 ZNF519-213 - 399 4.6e-07 30.0 54.9 7 9 0.093 58 4.0 0.4 25 40 317 332 313 341 0.78 LIM domain LIM PF00412.22 58 ZNF519-213 - 399 4.6e-07 30.0 54.9 8 9 0.027 17 5.8 4.8 1 43 321 363 321 370 0.71 LIM domain LIM PF00412.22 58 ZNF519-213 - 399 4.6e-07 30.0 54.9 9 9 0.0078 4.8 7.5 4.4 1 41 349 390 349 396 0.78 LIM domain zf_UBZ PF18439.1 32 ZNF519-213 - 399 5.9e-07 29.0 50.6 1 12 0.057 35 4.1 0.2 2 15 39 52 38 55 0.82 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF519-213 - 399 5.9e-07 29.0 50.6 2 12 3.7 2.3e+03 -1.7 0.1 7 21 72 87 71 87 0.83 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF519-213 - 399 5.9e-07 29.0 50.6 3 12 4.2 2.6e+03 -1.9 0.1 6 12 96 102 96 111 0.68 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF519-213 - 399 5.9e-07 29.0 50.6 4 12 0.0086 5.3 6.7 0.4 3 21 151 170 149 170 0.86 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF519-213 - 399 5.9e-07 29.0 50.6 5 12 0.024 15 5.3 0.1 3 13 179 189 177 198 0.79 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF519-213 - 399 5.9e-07 29.0 50.6 6 12 0.0096 5.9 6.6 0.1 3 13 207 217 205 226 0.79 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF519-213 - 399 5.9e-07 29.0 50.6 7 12 0.019 12 5.6 0.1 3 16 235 249 233 254 0.75 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF519-213 - 399 5.9e-07 29.0 50.6 8 12 0.0085 5.2 6.7 0.3 3 20 263 281 261 282 0.81 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF519-213 - 399 5.9e-07 29.0 50.6 9 12 0.012 7.7 6.2 0.2 2 13 290 301 289 310 0.83 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF519-213 - 399 5.9e-07 29.0 50.6 10 12 0.006 3.7 7.2 0.2 2 12 318 328 317 338 0.80 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF519-213 - 399 5.9e-07 29.0 50.6 11 12 0.0065 4 7.1 0.3 3 21 347 366 345 366 0.83 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF519-213 - 399 5.9e-07 29.0 50.6 12 12 0.011 6.6 6.4 0.1 3 20 375 393 373 394 0.81 Ubiquitin-Binding Zinc Finger # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF519-213.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF519-213.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF519-213.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF519-213.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF519-213.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:07:55 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-C2H2_4 PF13894.6 24 ZNF521-201 - 1311 6.1e-70 225.8 215.4 1 31 0.089 1.2e+02 3.9 0.2 1 20 47 66 47 69 0.87 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF521-201 - 1311 6.1e-70 225.8 215.4 2 31 2.4e-05 0.033 15.0 3.7 1 23 118 140 118 141 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF521-201 - 1311 6.1e-70 225.8 215.4 3 31 0.0031 4.3 8.4 4.5 1 23 146 168 146 169 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF521-201 - 1311 6.1e-70 225.8 215.4 4 31 3e-05 0.041 14.7 2.4 1 23 174 196 174 197 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF521-201 - 1311 6.1e-70 225.8 215.4 5 31 1.9e-05 0.026 15.3 0.9 1 23 202 224 202 225 0.97 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF521-201 - 1311 6.1e-70 225.8 215.4 6 31 0.00047 0.64 11.0 0.6 2 24 247 269 246 269 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF521-201 - 1311 6.1e-70 225.8 215.4 7 31 9.6e-05 0.13 13.1 0.7 2 24 282 304 281 304 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF521-201 - 1311 6.1e-70 225.8 215.4 8 31 1.3e-05 0.018 15.9 1.1 3 23 312 332 310 333 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF521-201 - 1311 6.1e-70 225.8 215.4 9 31 0.00041 0.56 11.2 0.5 1 24 405 429 405 429 0.82 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF521-201 - 1311 6.1e-70 225.8 215.4 10 31 0.00031 0.43 11.6 0.5 1 24 437 460 437 460 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF521-201 - 1311 6.1e-70 225.8 215.4 11 31 0.0017 2.3 9.3 0.1 1 21 477 497 477 497 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF521-201 - 1311 6.1e-70 225.8 215.4 12 31 0.00016 0.22 12.5 1.1 1 24 513 536 513 536 0.97 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF521-201 - 1311 6.1e-70 225.8 215.4 13 31 0.0035 4.8 8.3 0.5 1 24 560 585 560 585 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF521-201 - 1311 6.1e-70 225.8 215.4 14 31 1.6e-06 0.0022 18.7 0.4 1 23 634 656 634 657 0.97 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF521-201 - 1311 6.1e-70 225.8 215.4 15 31 3e-06 0.0041 17.8 0.3 2 23 665 686 664 687 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF521-201 - 1311 6.1e-70 225.8 215.4 16 31 3e-06 0.0041 17.8 0.2 1 24 694 717 694 717 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF521-201 - 1311 6.1e-70 225.8 215.4 17 31 0.00015 0.21 12.5 0.4 1 24 722 745 722 745 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF521-201 - 1311 6.1e-70 225.8 215.4 18 31 0.00067 0.93 10.5 1.3 1 24 752 775 752 775 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF521-201 - 1311 6.1e-70 225.8 215.4 19 31 0.00015 0.2 12.6 1.9 1 23 783 805 783 806 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF521-201 - 1311 6.1e-70 225.8 215.4 20 31 0.004 5.5 8.1 1.6 1 24 809 832 809 832 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF521-201 - 1311 6.1e-70 225.8 215.4 21 31 0.0012 1.7 9.7 0.0 2 24 887 909 886 909 0.81 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF521-201 - 1311 6.1e-70 225.8 215.4 22 31 2.8e-07 0.00038 21.0 0.8 1 23 930 952 930 953 0.97 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF521-201 - 1311 6.1e-70 225.8 215.4 23 31 1.2e-05 0.016 16.0 0.2 1 23 959 981 959 982 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF521-201 - 1311 6.1e-70 225.8 215.4 24 31 0.027 37 5.5 1.0 3 23 990 1010 989 1011 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF521-201 - 1311 6.1e-70 225.8 215.4 25 31 0.56 7.8e+02 1.4 0.2 1 19 1020 1038 1020 1042 0.90 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF521-201 - 1311 6.1e-70 225.8 215.4 26 31 0.051 71 4.7 0.3 1 17 1065 1081 1065 1082 0.91 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF521-201 - 1311 6.1e-70 225.8 215.4 27 31 5.9e-05 0.082 13.8 0.4 2 24 1139 1161 1138 1161 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF521-201 - 1311 6.1e-70 225.8 215.4 28 31 0.0048 6.6 7.9 0.1 1 23 1195 1217 1195 1218 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF521-201 - 1311 6.1e-70 225.8 215.4 29 31 9.1e-05 0.13 13.2 2.7 1 23 1225 1247 1225 1248 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF521-201 - 1311 6.1e-70 225.8 215.4 30 31 2.4e-05 0.033 15.0 0.6 1 24 1256 1279 1256 1279 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF521-201 - 1311 6.1e-70 225.8 215.4 31 31 0.0017 2.3 9.3 1.0 3 24 1288 1309 1286 1309 0.93 C2H2-type zinc finger zf-C2H2 PF00096.26 23 ZNF521-201 - 1311 1.1e-51 170.5 221.0 1 31 0.23 3.2e+02 2.1 0.2 1 20 47 66 47 68 0.91 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF521-201 - 1311 1.1e-51 170.5 221.0 2 31 1.4e-06 0.0019 18.6 4.1 1 23 118 140 118 140 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF521-201 - 1311 1.1e-51 170.5 221.0 3 31 0.0017 2.4 8.8 6.5 1 23 146 168 146 168 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF521-201 - 1311 1.1e-51 170.5 221.0 4 31 8.7e-07 0.0012 19.2 3.0 1 23 174 196 174 196 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF521-201 - 1311 1.1e-51 170.5 221.0 5 31 0.00055 0.76 10.4 1.2 1 23 202 224 202 224 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF521-201 - 1311 1.1e-51 170.5 221.0 6 31 0.00014 0.2 12.2 0.4 2 23 247 269 246 269 0.95 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF521-201 - 1311 1.1e-51 170.5 221.0 7 31 0.0017 2.3 8.9 0.4 2 23 282 304 281 304 0.94 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF521-201 - 1311 1.1e-51 170.5 221.0 8 31 0.00022 0.3 11.6 1.1 3 23 312 332 311 332 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF521-201 - 1311 1.1e-51 170.5 221.0 9 31 0.21 3e+02 2.2 0.4 1 23 405 429 405 429 0.90 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF521-201 - 1311 1.1e-51 170.5 221.0 10 31 0.00074 1 10.0 0.3 1 23 437 460 437 460 0.94 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF521-201 - 1311 1.1e-51 170.5 221.0 11 31 0.0017 2.3 8.8 1.1 1 21 477 497 477 500 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF521-201 - 1311 1.1e-51 170.5 221.0 12 31 0.0013 1.9 9.1 0.9 1 23 513 536 513 536 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF521-201 - 1311 1.1e-51 170.5 221.0 13 31 0.003 4.2 8.0 0.6 1 23 560 585 560 585 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF521-201 - 1311 1.1e-51 170.5 221.0 14 31 2e-05 0.027 14.9 0.8 1 23 634 656 634 656 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF521-201 - 1311 1.1e-51 170.5 221.0 15 31 1.3e-06 0.0018 18.6 0.2 2 23 665 686 664 686 0.95 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF521-201 - 1311 1.1e-51 170.5 221.0 16 31 1.9e-05 0.026 15.0 0.2 1 23 694 717 694 717 0.93 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF521-201 - 1311 1.1e-51 170.5 221.0 17 31 0.00088 1.2 9.7 0.2 1 23 722 745 722 745 0.95 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF521-201 - 1311 1.1e-51 170.5 221.0 18 31 0.00022 0.31 11.6 1.9 1 23 752 775 752 775 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF521-201 - 1311 1.1e-51 170.5 221.0 19 31 0.062 86 3.9 1.6 1 23 783 805 783 805 0.92 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF521-201 - 1311 1.1e-51 170.5 221.0 20 31 0.00018 0.25 11.9 1.4 1 23 809 832 809 832 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF521-201 - 1311 1.1e-51 170.5 221.0 21 31 0.00083 1.1 9.8 0.0 3 23 888 909 886 909 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF521-201 - 1311 1.1e-51 170.5 221.0 22 31 1.7e-06 0.0023 18.3 1.3 1 23 930 952 930 952 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF521-201 - 1311 1.1e-51 170.5 221.0 23 31 5.6e-05 0.077 13.5 0.1 1 23 959 981 959 981 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF521-201 - 1311 1.1e-51 170.5 221.0 24 31 3.7 5.1e+03 -1.7 1.0 3 23 990 1010 989 1010 0.82 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF521-201 - 1311 1.1e-51 170.5 221.0 25 31 1.4 2e+03 -0.4 0.3 1 19 1020 1038 1020 1042 0.86 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF521-201 - 1311 1.1e-51 170.5 221.0 26 31 0.041 56 4.5 0.4 1 18 1065 1082 1065 1082 0.93 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF521-201 - 1311 1.1e-51 170.5 221.0 27 31 3.7e-05 0.051 14.0 0.4 2 23 1139 1161 1138 1161 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF521-201 - 1311 1.1e-51 170.5 221.0 28 31 0.031 43 4.8 0.1 1 23 1195 1217 1195 1217 0.94 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF521-201 - 1311 1.1e-51 170.5 221.0 29 31 0.0089 12 6.5 2.2 1 23 1225 1247 1225 1247 0.93 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF521-201 - 1311 1.1e-51 170.5 221.0 30 31 2.9e-05 0.04 14.4 0.3 1 23 1256 1279 1256 1279 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF521-201 - 1311 1.1e-51 170.5 221.0 31 31 0.0002 0.28 11.7 1.6 1 23 1286 1309 1286 1309 0.97 Zinc finger, C2H2 type zf-C2H2_6 PF13912.6 27 ZNF521-201 - 1311 7.9e-34 115.0 183.1 1 27 8.1e-05 0.11 12.5 0.1 1 22 46 67 46 68 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF521-201 - 1311 7.9e-34 115.0 183.1 2 27 0.016 22 5.2 3.7 2 25 118 141 118 143 0.83 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF521-201 - 1311 7.9e-34 115.0 183.1 3 27 0.038 53 4.0 2.5 2 12 146 156 146 157 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF521-201 - 1311 7.9e-34 115.0 183.1 4 27 0.0014 2 8.5 3.4 2 24 174 196 173 198 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF521-201 - 1311 7.9e-34 115.0 183.1 5 27 0.011 15 5.7 1.5 2 25 202 225 202 226 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF521-201 - 1311 7.9e-34 115.0 183.1 6 27 1.4 1.9e+03 -1.0 0.8 3 11 247 255 247 256 0.88 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF521-201 - 1311 7.9e-34 115.0 183.1 7 27 0.00085 1.2 9.3 0.5 4 26 283 305 282 306 0.91 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF521-201 - 1311 7.9e-34 115.0 183.1 8 27 7.8e-06 0.011 15.7 0.8 4 26 312 334 311 335 0.95 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF521-201 - 1311 7.9e-34 115.0 183.1 9 27 0.017 24 5.1 0.3 2 26 405 431 404 432 0.88 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF521-201 - 1311 7.9e-34 115.0 183.1 10 27 6.2e-11 8.5e-08 32.0 0.2 1 26 436 462 436 463 0.92 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF521-201 - 1311 7.9e-34 115.0 183.1 11 27 1.2 1.7e+03 -0.8 0.9 1 10 476 485 476 500 0.77 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF521-201 - 1311 7.9e-34 115.0 183.1 12 27 0.47 6.5e+02 0.5 0.3 1 10 559 568 559 586 0.73 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF521-201 - 1311 7.9e-34 115.0 183.1 13 27 6.4e-07 0.00088 19.2 0.4 2 26 634 658 633 659 0.95 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF521-201 - 1311 7.9e-34 115.0 183.1 14 27 0.00051 0.7 10.0 0.1 4 20 666 682 665 686 0.92 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF521-201 - 1311 7.9e-34 115.0 183.1 15 27 1.5e-05 0.021 14.8 0.1 1 21 693 713 693 715 0.95 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF521-201 - 1311 7.9e-34 115.0 183.1 16 27 0.047 65 3.7 0.2 2 13 722 733 721 742 0.91 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF521-201 - 1311 7.9e-34 115.0 183.1 17 27 0.041 57 3.9 0.4 1 24 751 775 751 777 0.80 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF521-201 - 1311 7.9e-34 115.0 183.1 18 27 0.0027 3.7 7.6 2.7 1 26 782 807 782 808 0.92 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF521-201 - 1311 7.9e-34 115.0 183.1 19 27 0.0078 11 6.2 2.2 2 25 809 832 808 832 0.88 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF521-201 - 1311 7.9e-34 115.0 183.1 20 27 0.031 43 4.3 0.0 2 14 886 898 885 909 0.82 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF521-201 - 1311 7.9e-34 115.0 183.1 21 27 5.5e-08 7.5e-05 22.6 0.3 2 25 930 953 929 955 0.95 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF521-201 - 1311 7.9e-34 115.0 183.1 22 27 6.9e-07 0.00095 19.1 0.3 1 26 958 983 958 984 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF521-201 - 1311 7.9e-34 115.0 183.1 23 27 0.00051 0.71 9.9 0.6 2 17 1065 1080 1064 1082 0.92 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF521-201 - 1311 7.9e-34 115.0 183.1 24 27 0.0033 4.5 7.4 0.4 2 21 1138 1157 1137 1163 0.81 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF521-201 - 1311 7.9e-34 115.0 183.1 25 27 0.02 27 4.9 2.1 2 14 1225 1237 1224 1248 0.76 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF521-201 - 1311 7.9e-34 115.0 183.1 26 27 0.84 1.2e+03 -0.3 0.9 2 11 1256 1265 1255 1267 0.79 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF521-201 - 1311 7.9e-34 115.0 183.1 27 27 2.2 3e+03 -1.6 0.5 2 24 1286 1309 1285 1311 0.70 C2H2-type zinc finger zf-Di19 PF05605.12 54 ZNF521-201 - 1311 1e-22 80.1 170.9 1 20 0.00078 1.1 9.6 5.1 3 51 118 167 117 172 0.80 Drought induced 19 protein (Di19), zinc-binding zf-Di19 PF05605.12 54 ZNF521-201 - 1311 1e-22 80.1 170.9 2 20 0.031 43 4.5 3.9 3 52 174 224 172 226 0.73 Drought induced 19 protein (Di19), zinc-binding zf-Di19 PF05605.12 54 ZNF521-201 - 1311 1e-22 80.1 170.9 3 20 1.1 1.5e+03 -0.4 2.8 4 27 247 271 244 275 0.81 Drought induced 19 protein (Di19), zinc-binding zf-Di19 PF05605.12 54 ZNF521-201 - 1311 1e-22 80.1 170.9 4 20 5.7e-07 0.00079 19.7 6.0 3 51 281 331 279 334 0.83 Drought induced 19 protein (Di19), zinc-binding zf-Di19 PF05605.12 54 ZNF521-201 - 1311 1e-22 80.1 170.9 5 20 0.00011 0.15 12.4 3.5 2 53 404 460 403 461 0.83 Drought induced 19 protein (Di19), zinc-binding zf-Di19 PF05605.12 54 ZNF521-201 - 1311 1e-22 80.1 170.9 6 20 0.0033 4.5 7.6 0.3 3 28 477 503 476 507 0.88 Drought induced 19 protein (Di19), zinc-binding zf-Di19 PF05605.12 54 ZNF521-201 - 1311 1e-22 80.1 170.9 7 20 3.5e-06 0.0048 17.2 0.8 2 27 512 538 511 542 0.90 Drought induced 19 protein (Di19), zinc-binding zf-Di19 PF05605.12 54 ZNF521-201 - 1311 1e-22 80.1 170.9 8 20 0.034 46 4.4 0.1 3 26 560 586 558 589 0.80 Drought induced 19 protein (Di19), zinc-binding zf-Di19 PF05605.12 54 ZNF521-201 - 1311 1e-22 80.1 170.9 9 20 0.72 1e+03 0.1 0.1 3 23 634 655 631 659 0.54 Drought induced 19 protein (Di19), zinc-binding zf-Di19 PF05605.12 54 ZNF521-201 - 1311 1e-22 80.1 170.9 10 20 4.8e-08 6.6e-05 23.1 3.4 3 53 664 717 662 718 0.87 Drought induced 19 protein (Di19), zinc-binding zf-Di19 PF05605.12 54 ZNF521-201 - 1311 1e-22 80.1 170.9 11 20 7.6e-05 0.1 12.9 3.9 3 53 722 775 721 776 0.79 Drought induced 19 protein (Di19), zinc-binding zf-Di19 PF05605.12 54 ZNF521-201 - 1311 1e-22 80.1 170.9 12 20 0.011 15 6.0 0.9 4 25 784 805 781 808 0.83 Drought induced 19 protein (Di19), zinc-binding zf-Di19 PF05605.12 54 ZNF521-201 - 1311 1e-22 80.1 170.9 13 20 0.0026 3.6 7.9 3.1 2 30 808 837 807 857 0.79 Drought induced 19 protein (Di19), zinc-binding zf-Di19 PF05605.12 54 ZNF521-201 - 1311 1e-22 80.1 170.9 14 20 1.1 1.5e+03 -0.4 0.0 3 25 886 909 884 913 0.65 Drought induced 19 protein (Di19), zinc-binding zf-Di19 PF05605.12 54 ZNF521-201 - 1311 1e-22 80.1 170.9 15 20 1.3e-06 0.0018 18.5 2.9 2 42 929 969 928 982 0.84 Drought induced 19 protein (Di19), zinc-binding zf-Di19 PF05605.12 54 ZNF521-201 - 1311 1e-22 80.1 170.9 16 20 0.00022 0.3 11.4 4.6 3 51 959 1009 959 1013 0.81 Drought induced 19 protein (Di19), zinc-binding zf-Di19 PF05605.12 54 ZNF521-201 - 1311 1e-22 80.1 170.9 17 20 0.056 77 3.7 3.2 4 46 989 1034 986 1044 0.72 Drought induced 19 protein (Di19), zinc-binding zf-Di19 PF05605.12 54 ZNF521-201 - 1311 1e-22 80.1 170.9 18 20 0.093 1.3e+02 3.0 0.2 5 27 1140 1163 1137 1165 0.74 Drought induced 19 protein (Di19), zinc-binding zf-Di19 PF05605.12 54 ZNF521-201 - 1311 1e-22 80.1 170.9 19 20 0.96 1.3e+03 -0.3 5.0 3 49 1195 1244 1193 1248 0.75 Drought induced 19 protein (Di19), zinc-binding zf-Di19 PF05605.12 54 ZNF521-201 - 1311 1e-22 80.1 170.9 20 20 2.5e-07 0.00035 20.8 3.8 2 54 1255 1310 1254 1310 0.93 Drought induced 19 protein (Di19), zinc-binding zf-H2C2_2 PF13465.6 26 ZNF521-201 - 1311 8.3e-20 70.3 187.2 1 30 1.5 2e+03 -0.5 0.0 15 25 47 57 42 58 0.83 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF521-201 - 1311 8.3e-20 70.3 187.2 2 30 0.00072 0.99 10.0 0.4 14 25 117 128 102 129 0.89 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF521-201 - 1311 8.3e-20 70.3 187.2 3 30 0.0034 4.6 7.8 6.5 2 26 133 157 132 157 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF521-201 - 1311 8.3e-20 70.3 187.2 4 30 5e-09 6.8e-06 26.3 1.0 4 25 163 184 160 185 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF521-201 - 1311 8.3e-20 70.3 187.2 5 30 5.9e-07 0.00082 19.7 1.9 1 25 188 212 188 213 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF521-201 - 1311 8.3e-20 70.3 187.2 6 30 2 2.8e+03 -1.0 0.0 16 24 247 255 220 256 0.66 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF521-201 - 1311 8.3e-20 70.3 187.2 7 30 0.017 24 5.6 1.1 1 24 260 290 260 292 0.83 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF521-201 - 1311 8.3e-20 70.3 187.2 8 30 0.00082 1.1 9.8 0.3 1 25 295 320 295 321 0.88 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF521-201 - 1311 8.3e-20 70.3 187.2 9 30 5.2 7.2e+03 -2.2 0.0 2 12 325 335 324 336 0.82 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF521-201 - 1311 8.3e-20 70.3 187.2 10 30 0.65 9e+02 0.6 0.1 15 22 405 412 393 413 0.76 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF521-201 - 1311 8.3e-20 70.3 187.2 11 30 7.8 1.1e+04 -2.8 0.6 3 20 422 442 421 444 0.65 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF521-201 - 1311 8.3e-20 70.3 187.2 12 30 0.016 22 5.7 0.0 1 21 451 483 451 486 0.71 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF521-201 - 1311 8.3e-20 70.3 187.2 13 30 0.13 1.8e+02 2.8 0.7 2 25 492 523 491 524 0.65 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF521-201 - 1311 8.3e-20 70.3 187.2 14 30 5.2 7.2e+03 -2.3 1.9 14 20 555 565 527 568 0.55 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF521-201 - 1311 8.3e-20 70.3 187.2 15 30 0.56 7.7e+02 0.8 0.1 2 10 577 586 576 589 0.84 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF521-201 - 1311 8.3e-20 70.3 187.2 16 30 0.001 1.4 9.5 0.5 2 24 649 673 648 675 0.76 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF521-201 - 1311 8.3e-20 70.3 187.2 17 30 0.044 60 4.3 0.2 4 26 681 705 678 705 0.69 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF521-201 - 1311 8.3e-20 70.3 187.2 18 30 0.0032 4.5 7.9 0.2 1 25 708 732 708 733 0.86 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF521-201 - 1311 8.3e-20 70.3 187.2 19 30 0.00092 1.3 9.6 0.1 5 21 740 758 737 763 0.85 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF521-201 - 1311 8.3e-20 70.3 187.2 20 30 0.00093 1.3 9.6 0.6 2 26 767 794 766 794 0.79 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF521-201 - 1311 8.3e-20 70.3 187.2 21 30 0.014 19 5.9 6.3 5 24 801 818 797 819 0.84 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF521-201 - 1311 8.3e-20 70.3 187.2 22 30 6.7 9.3e+03 -2.6 0.8 2 9 824 832 824 832 0.79 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF521-201 - 1311 8.3e-20 70.3 187.2 23 30 0.031 43 4.8 0.1 4 24 903 939 901 941 0.58 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF521-201 - 1311 8.3e-20 70.3 187.2 24 30 8.8e-06 0.012 16.0 0.4 1 24 944 968 944 970 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF521-201 - 1311 8.3e-20 70.3 187.2 25 30 0.002 2.8 8.5 0.1 9 25 1059 1075 1056 1076 0.88 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF521-201 - 1311 8.3e-20 70.3 187.2 26 30 1.2 1.7e+03 -0.2 0.3 16 25 1139 1148 1136 1149 0.88 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF521-201 - 1311 8.3e-20 70.3 187.2 27 30 0.063 88 3.8 0.3 12 24 1192 1204 1188 1206 0.81 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF521-201 - 1311 8.3e-20 70.3 187.2 28 30 0.0044 6 7.5 0.0 5 25 1213 1235 1210 1236 0.75 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF521-201 - 1311 8.3e-20 70.3 187.2 29 30 0.036 49 4.6 0.7 5 24 1243 1265 1239 1267 0.77 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF521-201 - 1311 8.3e-20 70.3 187.2 30 30 0.0033 4.6 7.8 0.2 2 24 1271 1295 1270 1296 0.88 Zinc-finger double domain zf-C2H2_jaz PF12171.8 27 ZNF521-201 - 1311 2.2e-08 34.2 181.6 1 28 0.00074 1 9.7 1.8 2 24 118 140 117 141 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF521-201 - 1311 2.2e-08 34.2 181.6 2 28 0.00042 0.58 10.5 0.7 2 22 146 166 145 166 0.95 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF521-201 - 1311 2.2e-08 34.2 181.6 3 28 0.034 47 4.4 2.7 4 24 176 196 173 196 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF521-201 - 1311 2.2e-08 34.2 181.6 4 28 0.0004 0.55 10.6 0.0 2 21 202 221 201 222 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF521-201 - 1311 2.2e-08 34.2 181.6 5 28 2.5 3.4e+03 -1.5 0.2 4 21 248 265 247 267 0.86 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF521-201 - 1311 2.2e-08 34.2 181.6 6 28 0.047 64 4.0 0.5 4 21 283 300 281 301 0.96 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF521-201 - 1311 2.2e-08 34.2 181.6 7 28 0.13 1.8e+02 2.6 2.1 4 25 312 333 309 333 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF521-201 - 1311 2.2e-08 34.2 181.6 8 28 0.0074 10 6.5 0.5 2 22 405 426 404 429 0.79 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF521-201 - 1311 2.2e-08 34.2 181.6 9 28 0.12 1.7e+02 2.7 0.3 4 22 479 497 476 497 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF521-201 - 1311 2.2e-08 34.2 181.6 10 28 0.00028 0.38 11.1 0.1 2 22 513 533 512 534 0.96 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF521-201 - 1311 2.2e-08 34.2 181.6 11 28 6.6 9.1e+03 -2.9 0.5 11 23 571 583 570 586 0.82 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF521-201 - 1311 2.2e-08 34.2 181.6 12 28 0.028 39 4.7 0.6 2 24 634 656 633 657 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF521-201 - 1311 2.2e-08 34.2 181.6 13 28 4.7e-05 0.064 13.6 0.1 2 21 664 683 663 684 0.91 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF521-201 - 1311 2.2e-08 34.2 181.6 14 28 9.9e-06 0.014 15.7 0.6 2 21 694 713 693 714 0.95 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF521-201 - 1311 2.2e-08 34.2 181.6 15 28 0.035 49 4.4 0.1 2 21 722 741 722 742 0.91 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF521-201 - 1311 2.2e-08 34.2 181.6 16 28 0.0038 5.2 7.5 0.2 2 22 752 772 751 772 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF521-201 - 1311 2.2e-08 34.2 181.6 17 28 0.029 40 4.6 1.1 2 24 783 805 782 807 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF521-201 - 1311 2.2e-08 34.2 181.6 18 28 0.0031 4.2 7.8 2.0 1 24 808 831 808 831 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF521-201 - 1311 2.2e-08 34.2 181.6 19 28 0.28 3.9e+02 1.5 0.0 4 21 888 905 886 906 0.95 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF521-201 - 1311 2.2e-08 34.2 181.6 20 28 2.2e-05 0.03 14.6 0.6 2 24 930 952 929 953 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF521-201 - 1311 2.2e-08 34.2 181.6 21 28 0.14 1.9e+02 2.5 0.0 2 23 959 980 958 982 0.88 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF521-201 - 1311 2.2e-08 34.2 181.6 22 28 0.33 4.5e+02 1.3 1.0 4 21 990 1007 989 1008 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF521-201 - 1311 2.2e-08 34.2 181.6 23 28 4.8 6.7e+03 -2.4 0.2 2 7 1020 1025 1019 1025 0.91 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF521-201 - 1311 2.2e-08 34.2 181.6 24 28 1.8 2.5e+03 -1.1 0.6 2 18 1065 1081 1065 1082 0.88 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF521-201 - 1311 2.2e-08 34.2 181.6 25 28 3.8e-05 0.052 13.8 1.2 4 23 1140 1159 1139 1161 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF521-201 - 1311 2.2e-08 34.2 181.6 26 28 7.7 1.1e+04 -3.1 0.4 4 20 1197 1213 1195 1215 0.78 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF521-201 - 1311 2.2e-08 34.2 181.6 27 28 0.29 4e+02 1.5 1.8 2 21 1225 1244 1224 1248 0.85 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF521-201 - 1311 2.2e-08 34.2 181.6 28 28 0.54 7.4e+02 0.6 0.5 2 21 1256 1275 1255 1277 0.91 Zinc-finger double-stranded RNA-binding # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF521-201.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF521-201.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF521-201.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF521-201.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF521-201.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:07:56 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-C2H2_4 PF13894.6 24 ZNF521-202 - 1244 2.1e-62 202.3 185.5 1 27 0.091 1.2e+02 4.0 0.2 1 20 47 66 47 69 0.87 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF521-202 - 1244 2.1e-62 202.3 185.5 2 27 2.4e-05 0.031 15.1 3.7 1 23 118 140 118 141 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF521-202 - 1244 2.1e-62 202.3 185.5 3 27 0.0032 4.1 8.5 4.5 1 23 146 168 146 169 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF521-202 - 1244 2.1e-62 202.3 185.5 4 27 3e-05 0.039 14.8 2.4 1 23 174 196 174 197 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF521-202 - 1244 2.1e-62 202.3 185.5 5 27 1.9e-05 0.025 15.4 0.9 1 23 202 224 202 225 0.97 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF521-202 - 1244 2.1e-62 202.3 185.5 6 27 0.00047 0.61 11.1 0.6 2 24 247 269 246 269 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF521-202 - 1244 2.1e-62 202.3 185.5 7 27 9.7e-05 0.12 13.2 0.7 2 24 282 304 281 304 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF521-202 - 1244 2.1e-62 202.3 185.5 8 27 1.3e-05 0.017 15.9 1.1 3 23 312 332 310 333 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF521-202 - 1244 2.1e-62 202.3 185.5 9 27 0.00042 0.53 11.3 0.5 1 24 405 429 405 429 0.82 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF521-202 - 1244 2.1e-62 202.3 185.5 10 27 0.00031 0.4 11.6 0.5 1 24 437 460 437 460 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF521-202 - 1244 2.1e-62 202.3 185.5 11 27 0.0017 2.2 9.4 0.1 1 21 477 497 477 497 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF521-202 - 1244 2.1e-62 202.3 185.5 12 27 0.00016 0.2 12.6 1.1 1 24 513 536 513 536 0.97 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF521-202 - 1244 2.1e-62 202.3 185.5 13 27 0.0035 4.5 8.4 0.5 1 24 560 585 560 585 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF521-202 - 1244 2.1e-62 202.3 185.5 14 27 1.6e-06 0.0021 18.8 0.4 1 23 634 656 634 657 0.97 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF521-202 - 1244 2.1e-62 202.3 185.5 15 27 3e-06 0.0039 17.9 0.3 2 23 665 686 664 687 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF521-202 - 1244 2.1e-62 202.3 185.5 16 27 3e-06 0.0039 17.9 0.2 1 24 694 717 694 717 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF521-202 - 1244 2.1e-62 202.3 185.5 17 27 0.00016 0.2 12.6 0.4 1 24 722 745 722 745 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF521-202 - 1244 2.1e-62 202.3 185.5 18 27 0.00068 0.88 10.6 1.3 1 24 752 775 752 775 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF521-202 - 1244 2.1e-62 202.3 185.5 19 27 0.00015 0.19 12.6 1.9 1 23 783 805 783 806 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF521-202 - 1244 2.1e-62 202.3 185.5 20 27 0.0041 5.2 8.2 1.6 1 24 809 832 809 832 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF521-202 - 1244 2.1e-62 202.3 185.5 21 27 0.0012 1.6 9.8 0.0 2 24 887 909 886 909 0.81 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF521-202 - 1244 2.1e-62 202.3 185.5 22 27 2.8e-07 0.00036 21.1 0.8 1 23 930 952 930 953 0.97 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF521-202 - 1244 2.1e-62 202.3 185.5 23 27 1.2e-05 0.015 16.1 0.2 1 23 959 981 959 982 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF521-202 - 1244 2.1e-62 202.3 185.5 24 27 0.027 35 5.6 1.0 3 23 990 1010 989 1011 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF521-202 - 1244 2.1e-62 202.3 185.5 25 27 0.57 7.3e+02 1.5 0.2 1 19 1020 1038 1020 1042 0.90 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF521-202 - 1244 2.1e-62 202.3 185.5 26 27 0.052 67 4.7 0.3 1 17 1065 1081 1065 1082 0.91 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF521-202 - 1244 2.1e-62 202.3 185.5 27 27 6e-05 0.077 13.9 0.4 2 24 1139 1161 1138 1161 0.95 C2H2-type zinc finger zf-C2H2 PF00096.26 23 ZNF521-202 - 1244 2.5e-46 153.6 192.4 1 27 0.24 3e+02 2.2 0.2 1 20 47 66 47 68 0.91 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF521-202 - 1244 2.5e-46 153.6 192.4 2 27 1.4e-06 0.0018 18.6 4.1 1 23 118 140 118 140 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF521-202 - 1244 2.5e-46 153.6 192.4 3 27 0.0017 2.2 8.9 6.5 1 23 146 168 146 168 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF521-202 - 1244 2.5e-46 153.6 192.4 4 27 8.9e-07 0.0011 19.3 3.0 1 23 174 196 174 196 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF521-202 - 1244 2.5e-46 153.6 192.4 5 27 0.00056 0.72 10.4 1.2 1 23 202 224 202 224 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF521-202 - 1244 2.5e-46 153.6 192.4 6 27 0.00014 0.19 12.3 0.4 2 23 247 269 246 269 0.95 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF521-202 - 1244 2.5e-46 153.6 192.4 7 27 0.0017 2.1 8.9 0.4 2 23 282 304 281 304 0.94 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF521-202 - 1244 2.5e-46 153.6 192.4 8 27 0.00022 0.28 11.7 1.1 3 23 312 332 311 332 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF521-202 - 1244 2.5e-46 153.6 192.4 9 27 0.22 2.8e+02 2.3 0.4 1 23 405 429 405 429 0.90 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF521-202 - 1244 2.5e-46 153.6 192.4 10 27 0.00075 0.96 10.0 0.3 1 23 437 460 437 460 0.94 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF521-202 - 1244 2.5e-46 153.6 192.4 11 27 0.0017 2.2 8.9 1.1 1 21 477 497 477 500 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF521-202 - 1244 2.5e-46 153.6 192.4 12 27 0.0014 1.8 9.2 0.9 1 23 513 536 513 536 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF521-202 - 1244 2.5e-46 153.6 192.4 13 27 0.0031 3.9 8.1 0.6 1 23 560 585 560 585 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF521-202 - 1244 2.5e-46 153.6 192.4 14 27 2e-05 0.026 15.0 0.8 1 23 634 656 634 656 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF521-202 - 1244 2.5e-46 153.6 192.4 15 27 1.3e-06 0.0017 18.7 0.2 2 23 665 686 664 686 0.95 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF521-202 - 1244 2.5e-46 153.6 192.4 16 27 1.9e-05 0.024 15.1 0.2 1 23 694 717 694 717 0.93 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF521-202 - 1244 2.5e-46 153.6 192.4 17 27 0.00089 1.1 9.8 0.2 1 23 722 745 722 745 0.95 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF521-202 - 1244 2.5e-46 153.6 192.4 18 27 0.00022 0.29 11.7 1.9 1 23 752 775 752 775 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF521-202 - 1244 2.5e-46 153.6 192.4 19 27 0.063 81 4.0 1.6 1 23 783 805 783 805 0.92 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF521-202 - 1244 2.5e-46 153.6 192.4 20 27 0.00018 0.23 12.0 1.4 1 23 809 832 809 832 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF521-202 - 1244 2.5e-46 153.6 192.4 21 27 0.00084 1.1 9.9 0.0 3 23 888 909 886 909 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF521-202 - 1244 2.5e-46 153.6 192.4 22 27 1.7e-06 0.0021 18.4 1.3 1 23 930 952 930 952 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF521-202 - 1244 2.5e-46 153.6 192.4 23 27 5.7e-05 0.073 13.6 0.1 1 23 959 981 959 981 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF521-202 - 1244 2.5e-46 153.6 192.4 24 27 3.7 4.8e+03 -1.6 1.0 3 23 990 1010 989 1010 0.82 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF521-202 - 1244 2.5e-46 153.6 192.4 25 27 1.4 1.8e+03 -0.3 0.3 1 19 1020 1038 1020 1042 0.86 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF521-202 - 1244 2.5e-46 153.6 192.4 26 27 0.041 53 4.5 0.4 1 18 1065 1082 1065 1082 0.93 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF521-202 - 1244 2.5e-46 153.6 192.4 27 27 3.8e-05 0.049 14.1 0.4 2 23 1139 1161 1138 1161 0.97 Zinc finger, C2H2 type zf-C2H2_6 PF13912.6 27 ZNF521-202 - 1244 3.6e-38 128.9 158.9 1 24 8.2e-05 0.1 12.6 0.1 1 22 46 67 46 68 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF521-202 - 1244 3.6e-38 128.9 158.9 2 24 0.016 21 5.2 3.7 2 25 118 141 118 143 0.84 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF521-202 - 1244 3.6e-38 128.9 158.9 3 24 0.039 50 4.1 2.5 2 12 146 156 146 157 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF521-202 - 1244 3.6e-38 128.9 158.9 4 24 0.0015 1.9 8.6 3.4 2 24 174 196 173 198 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF521-202 - 1244 3.6e-38 128.9 158.9 5 24 0.011 15 5.8 1.5 2 25 202 225 202 226 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF521-202 - 1244 3.6e-38 128.9 158.9 6 24 1.4 1.8e+03 -0.9 0.8 3 11 247 255 247 256 0.88 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF521-202 - 1244 3.6e-38 128.9 158.9 7 24 0.00086 1.1 9.3 0.5 4 26 283 305 282 306 0.91 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF521-202 - 1244 3.6e-38 128.9 158.9 8 24 7.9e-06 0.01 15.8 0.8 4 26 312 334 311 335 0.95 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF521-202 - 1244 3.6e-38 128.9 158.9 9 24 0.017 22 5.2 0.3 2 26 405 431 404 432 0.88 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF521-202 - 1244 3.6e-38 128.9 158.9 10 24 6.3e-11 8e-08 32.1 0.2 1 26 436 462 436 463 0.92 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF521-202 - 1244 3.6e-38 128.9 158.9 11 24 1.2 1.6e+03 -0.7 0.9 1 10 476 485 476 500 0.76 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF521-202 - 1244 3.6e-38 128.9 158.9 12 24 0.48 6.2e+02 0.6 0.3 1 10 559 568 559 586 0.73 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF521-202 - 1244 3.6e-38 128.9 158.9 13 24 6.5e-07 0.00083 19.3 0.4 2 26 634 658 633 659 0.95 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF521-202 - 1244 3.6e-38 128.9 158.9 14 24 0.00052 0.66 10.0 0.1 4 20 666 682 665 686 0.92 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF521-202 - 1244 3.6e-38 128.9 158.9 15 24 1.6e-05 0.02 14.9 0.1 1 21 693 713 693 715 0.95 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF521-202 - 1244 3.6e-38 128.9 158.9 16 24 0.048 62 3.8 0.2 2 13 722 733 721 742 0.91 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF521-202 - 1244 3.6e-38 128.9 158.9 17 24 0.042 54 3.9 0.4 1 24 751 775 751 777 0.80 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF521-202 - 1244 3.6e-38 128.9 158.9 18 24 0.0028 3.5 7.7 2.7 1 26 782 807 782 808 0.92 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF521-202 - 1244 3.6e-38 128.9 158.9 19 24 0.0079 10 6.3 2.2 2 25 809 832 808 832 0.88 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF521-202 - 1244 3.6e-38 128.9 158.9 20 24 0.032 41 4.3 0.0 2 14 886 898 885 909 0.82 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF521-202 - 1244 3.6e-38 128.9 158.9 21 24 5.6e-08 7.1e-05 22.7 0.3 2 25 930 953 929 955 0.95 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF521-202 - 1244 3.6e-38 128.9 158.9 22 24 7e-07 0.00089 19.2 0.3 1 26 958 983 958 984 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF521-202 - 1244 3.6e-38 128.9 158.9 23 24 0.00052 0.67 10.0 0.6 2 17 1065 1080 1064 1082 0.92 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF521-202 - 1244 3.6e-38 128.9 158.9 24 24 0.0033 4.3 7.5 0.4 2 21 1138 1157 1137 1163 0.81 C2H2-type zinc finger zf-Di19 PF05605.12 54 ZNF521-202 - 1244 1.1e-20 73.7 146.4 1 18 0.00079 1 9.7 5.0 3 51 118 167 117 170 0.80 Drought induced 19 protein (Di19), zinc-binding zf-Di19 PF05605.12 54 ZNF521-202 - 1244 1.1e-20 73.7 146.4 2 18 0.03 38 4.7 3.9 3 52 174 224 172 226 0.73 Drought induced 19 protein (Di19), zinc-binding zf-Di19 PF05605.12 54 ZNF521-202 - 1244 1.1e-20 73.7 146.4 3 18 1.1 1.4e+03 -0.3 2.8 4 27 247 271 244 275 0.81 Drought induced 19 protein (Di19), zinc-binding zf-Di19 PF05605.12 54 ZNF521-202 - 1244 1.1e-20 73.7 146.4 4 18 5.8e-07 0.00074 19.8 6.0 3 51 281 331 279 334 0.83 Drought induced 19 protein (Di19), zinc-binding zf-Di19 PF05605.12 54 ZNF521-202 - 1244 1.1e-20 73.7 146.4 5 18 0.00011 0.14 12.5 3.5 2 53 404 460 403 461 0.83 Drought induced 19 protein (Di19), zinc-binding zf-Di19 PF05605.12 54 ZNF521-202 - 1244 1.1e-20 73.7 146.4 6 18 0.0033 4.2 7.7 0.3 3 28 477 503 476 507 0.88 Drought induced 19 protein (Di19), zinc-binding zf-Di19 PF05605.12 54 ZNF521-202 - 1244 1.1e-20 73.7 146.4 7 18 3.5e-06 0.0045 17.3 0.8 2 27 512 538 511 542 0.90 Drought induced 19 protein (Di19), zinc-binding zf-Di19 PF05605.12 54 ZNF521-202 - 1244 1.1e-20 73.7 146.4 8 18 0.034 44 4.5 0.1 3 26 560 586 558 589 0.80 Drought induced 19 protein (Di19), zinc-binding zf-Di19 PF05605.12 54 ZNF521-202 - 1244 1.1e-20 73.7 146.4 9 18 0.74 9.4e+02 0.2 0.1 3 23 634 655 631 659 0.54 Drought induced 19 protein (Di19), zinc-binding zf-Di19 PF05605.12 54 ZNF521-202 - 1244 1.1e-20 73.7 146.4 10 18 4.8e-08 6.2e-05 23.2 3.4 3 53 664 717 662 718 0.87 Drought induced 19 protein (Di19), zinc-binding zf-Di19 PF05605.12 54 ZNF521-202 - 1244 1.1e-20 73.7 146.4 11 18 8.3e-05 0.11 12.9 4.0 3 53 722 775 721 776 0.79 Drought induced 19 protein (Di19), zinc-binding zf-Di19 PF05605.12 54 ZNF521-202 - 1244 1.1e-20 73.7 146.4 12 18 0.011 15 6.0 0.9 4 25 784 805 781 808 0.83 Drought induced 19 protein (Di19), zinc-binding zf-Di19 PF05605.12 54 ZNF521-202 - 1244 1.1e-20 73.7 146.4 13 18 0.0026 3.3 8.1 3.1 2 30 808 837 807 859 0.79 Drought induced 19 protein (Di19), zinc-binding zf-Di19 PF05605.12 54 ZNF521-202 - 1244 1.1e-20 73.7 146.4 14 18 1.1 1.4e+03 -0.3 0.0 3 25 886 909 884 913 0.65 Drought induced 19 protein (Di19), zinc-binding zf-Di19 PF05605.12 54 ZNF521-202 - 1244 1.1e-20 73.7 146.4 15 18 1.3e-06 0.0017 18.6 2.9 2 42 929 969 928 982 0.84 Drought induced 19 protein (Di19), zinc-binding zf-Di19 PF05605.12 54 ZNF521-202 - 1244 1.1e-20 73.7 146.4 16 18 0.00025 0.32 11.3 6.0 2 51 958 1009 957 1013 0.81 Drought induced 19 protein (Di19), zinc-binding zf-Di19 PF05605.12 54 ZNF521-202 - 1244 1.1e-20 73.7 146.4 17 18 0.06 76 3.7 3.3 4 46 989 1034 986 1044 0.72 Drought induced 19 protein (Di19), zinc-binding zf-Di19 PF05605.12 54 ZNF521-202 - 1244 1.1e-20 73.7 146.4 18 18 0.094 1.2e+02 3.1 0.2 5 27 1140 1163 1137 1165 0.74 Drought induced 19 protein (Di19), zinc-binding zf-H2C2_2 PF13465.6 26 ZNF521-202 - 1244 2.6e-17 62.4 165.7 1 26 1.5 1.9e+03 -0.4 0.0 15 25 47 57 42 58 0.83 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF521-202 - 1244 2.6e-17 62.4 165.7 2 26 0.00073 0.94 10.0 0.4 14 25 117 128 102 129 0.89 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF521-202 - 1244 2.6e-17 62.4 165.7 3 26 0.0034 4.4 7.9 6.5 2 26 133 157 132 157 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF521-202 - 1244 2.6e-17 62.4 165.7 4 26 5e-09 6.5e-06 26.3 1.0 4 25 163 184 160 185 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF521-202 - 1244 2.6e-17 62.4 165.7 5 26 6e-07 0.00077 19.8 1.9 1 25 188 212 188 213 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF521-202 - 1244 2.6e-17 62.4 165.7 6 26 2.1 2.7e+03 -0.9 0.0 16 24 247 255 220 256 0.66 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF521-202 - 1244 2.6e-17 62.4 165.7 7 26 0.018 22 5.7 1.1 1 24 260 290 260 292 0.83 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF521-202 - 1244 2.6e-17 62.4 165.7 8 26 0.00084 1.1 9.8 0.3 1 25 295 320 295 321 0.88 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF521-202 - 1244 2.6e-17 62.4 165.7 9 26 5.3 6.8e+03 -2.2 0.0 2 12 325 335 324 336 0.82 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF521-202 - 1244 2.6e-17 62.4 165.7 10 26 0.67 8.5e+02 0.7 0.1 15 22 405 412 393 413 0.76 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF521-202 - 1244 2.6e-17 62.4 165.7 11 26 7.9 1e+04 -2.7 0.6 3 20 422 442 421 444 0.65 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF521-202 - 1244 2.6e-17 62.4 165.7 12 26 0.016 20 5.8 0.0 1 21 451 483 451 486 0.71 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF521-202 - 1244 2.6e-17 62.4 165.7 13 26 0.13 1.7e+02 2.9 0.7 2 25 492 523 491 524 0.65 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF521-202 - 1244 2.6e-17 62.4 165.7 14 26 5.8 7.4e+03 -2.3 2.1 14 20 555 565 527 568 0.55 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF521-202 - 1244 2.6e-17 62.4 165.7 15 26 0.57 7.3e+02 0.9 0.1 2 10 577 586 576 589 0.84 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF521-202 - 1244 2.6e-17 62.4 165.7 16 26 0.0011 1.3 9.5 0.5 2 24 649 673 648 675 0.76 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF521-202 - 1244 2.6e-17 62.4 165.7 17 26 0.045 57 4.4 0.2 4 26 681 705 678 705 0.69 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF521-202 - 1244 2.6e-17 62.4 165.7 18 26 0.0033 4.2 8.0 0.2 1 25 708 732 708 733 0.86 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF521-202 - 1244 2.6e-17 62.4 165.7 19 26 0.00093 1.2 9.7 0.1 5 21 740 758 737 763 0.85 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF521-202 - 1244 2.6e-17 62.4 165.7 20 26 0.00094 1.2 9.7 0.6 2 26 767 794 766 794 0.79 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF521-202 - 1244 2.6e-17 62.4 165.7 21 26 0.014 18 6.0 6.3 5 24 801 818 797 819 0.84 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF521-202 - 1244 2.6e-17 62.4 165.7 22 26 6.9 8.8e+03 -2.5 0.8 2 9 824 832 824 832 0.79 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF521-202 - 1244 2.6e-17 62.4 165.7 23 26 0.031 40 4.9 0.1 4 24 903 939 901 941 0.58 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF521-202 - 1244 2.6e-17 62.4 165.7 24 26 9e-06 0.011 16.1 0.4 1 24 944 968 944 970 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF521-202 - 1244 2.6e-17 62.4 165.7 25 26 0.0021 2.7 8.6 0.1 9 25 1059 1075 1056 1076 0.88 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF521-202 - 1244 2.6e-17 62.4 165.7 26 26 1.2 1.6e+03 -0.2 0.3 16 25 1139 1148 1136 1149 0.88 Zinc-finger double domain zf-C2H2_jaz PF12171.8 27 ZNF521-202 - 1244 1.6e-13 50.5 158.7 1 25 0.00076 0.97 9.8 1.8 2 24 118 140 117 141 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF521-202 - 1244 1.6e-13 50.5 158.7 2 25 0.00043 0.55 10.6 0.7 2 22 146 166 145 166 0.95 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF521-202 - 1244 1.6e-13 50.5 158.7 3 25 0.035 45 4.5 2.7 4 24 176 196 173 196 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF521-202 - 1244 1.6e-13 50.5 158.7 4 25 0.00041 0.52 10.7 0.0 2 21 202 221 201 222 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF521-202 - 1244 1.6e-13 50.5 158.7 5 25 2.5 3.3e+03 -1.4 0.2 4 21 248 265 247 267 0.86 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF521-202 - 1244 1.6e-13 50.5 158.7 6 25 0.047 61 4.1 0.5 4 21 283 300 281 301 0.96 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF521-202 - 1244 1.6e-13 50.5 158.7 7 25 0.13 1.7e+02 2.7 2.1 4 25 312 333 309 333 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF521-202 - 1244 1.6e-13 50.5 158.7 8 25 0.0075 9.7 6.6 0.5 2 22 405 426 404 429 0.79 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF521-202 - 1244 1.6e-13 50.5 158.7 9 25 0.12 1.6e+02 2.8 0.3 4 22 479 497 476 497 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF521-202 - 1244 1.6e-13 50.5 158.7 10 25 0.00028 0.36 11.2 0.1 2 22 513 533 512 534 0.96 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF521-202 - 1244 1.6e-13 50.5 158.7 11 25 6.7 8.6e+03 -2.8 0.5 11 23 571 583 570 586 0.82 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF521-202 - 1244 1.6e-13 50.5 158.7 12 25 0.029 37 4.8 0.6 2 24 634 656 633 657 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF521-202 - 1244 1.6e-13 50.5 158.7 13 25 4.7e-05 0.061 13.6 0.1 2 21 664 683 663 684 0.91 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF521-202 - 1244 1.6e-13 50.5 158.7 14 25 1e-05 0.013 15.8 0.6 2 21 694 713 693 714 0.95 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF521-202 - 1244 1.6e-13 50.5 158.7 15 25 0.036 46 4.5 0.1 2 21 722 741 722 742 0.91 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF521-202 - 1244 1.6e-13 50.5 158.7 16 25 0.0039 4.9 7.5 0.2 2 22 752 772 751 772 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF521-202 - 1244 1.6e-13 50.5 158.7 17 25 0.03 38 4.7 1.1 2 24 783 805 782 807 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF521-202 - 1244 1.6e-13 50.5 158.7 18 25 0.0031 4 7.8 2.0 1 24 808 831 808 831 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF521-202 - 1244 1.6e-13 50.5 158.7 19 25 0.29 3.7e+02 1.6 0.0 4 21 888 905 886 906 0.95 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF521-202 - 1244 1.6e-13 50.5 158.7 20 25 2.2e-05 0.029 14.7 0.6 2 24 930 952 929 953 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF521-202 - 1244 1.6e-13 50.5 158.7 21 25 0.14 1.8e+02 2.6 0.0 2 23 959 980 958 982 0.88 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF521-202 - 1244 1.6e-13 50.5 158.7 22 25 0.33 4.3e+02 1.4 1.0 4 21 990 1007 989 1008 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF521-202 - 1244 1.6e-13 50.5 158.7 23 25 4.9 6.3e+03 -2.4 0.2 2 7 1020 1025 1019 1025 0.91 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF521-202 - 1244 1.6e-13 50.5 158.7 24 25 1.9 2.4e+03 -1.0 0.6 2 18 1065 1081 1065 1082 0.88 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF521-202 - 1244 1.6e-13 50.5 158.7 25 25 3.8e-05 0.049 13.9 1.2 4 23 1140 1159 1139 1161 0.93 Zinc-finger double-stranded RNA-binding # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF521-202.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF521-202.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF521-202.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF521-202.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF521-202.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:07:56 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-C2H2_4 PF13894.6 24 ZNF521-203 - 1311 6.1e-70 225.8 215.4 1 31 0.089 1.2e+02 3.9 0.2 1 20 47 66 47 69 0.87 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF521-203 - 1311 6.1e-70 225.8 215.4 2 31 2.4e-05 0.033 15.0 3.7 1 23 118 140 118 141 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF521-203 - 1311 6.1e-70 225.8 215.4 3 31 0.0031 4.3 8.4 4.5 1 23 146 168 146 169 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF521-203 - 1311 6.1e-70 225.8 215.4 4 31 3e-05 0.041 14.7 2.4 1 23 174 196 174 197 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF521-203 - 1311 6.1e-70 225.8 215.4 5 31 1.9e-05 0.026 15.3 0.9 1 23 202 224 202 225 0.97 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF521-203 - 1311 6.1e-70 225.8 215.4 6 31 0.00047 0.64 11.0 0.6 2 24 247 269 246 269 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF521-203 - 1311 6.1e-70 225.8 215.4 7 31 9.6e-05 0.13 13.1 0.7 2 24 282 304 281 304 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF521-203 - 1311 6.1e-70 225.8 215.4 8 31 1.3e-05 0.018 15.9 1.1 3 23 312 332 310 333 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF521-203 - 1311 6.1e-70 225.8 215.4 9 31 0.00041 0.56 11.2 0.5 1 24 405 429 405 429 0.82 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF521-203 - 1311 6.1e-70 225.8 215.4 10 31 0.00031 0.43 11.6 0.5 1 24 437 460 437 460 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF521-203 - 1311 6.1e-70 225.8 215.4 11 31 0.0017 2.3 9.3 0.1 1 21 477 497 477 497 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF521-203 - 1311 6.1e-70 225.8 215.4 12 31 0.00016 0.22 12.5 1.1 1 24 513 536 513 536 0.97 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF521-203 - 1311 6.1e-70 225.8 215.4 13 31 0.0035 4.8 8.3 0.5 1 24 560 585 560 585 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF521-203 - 1311 6.1e-70 225.8 215.4 14 31 1.6e-06 0.0022 18.7 0.4 1 23 634 656 634 657 0.97 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF521-203 - 1311 6.1e-70 225.8 215.4 15 31 3e-06 0.0041 17.8 0.3 2 23 665 686 664 687 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF521-203 - 1311 6.1e-70 225.8 215.4 16 31 3e-06 0.0041 17.8 0.2 1 24 694 717 694 717 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF521-203 - 1311 6.1e-70 225.8 215.4 17 31 0.00015 0.21 12.5 0.4 1 24 722 745 722 745 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF521-203 - 1311 6.1e-70 225.8 215.4 18 31 0.00067 0.93 10.5 1.3 1 24 752 775 752 775 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF521-203 - 1311 6.1e-70 225.8 215.4 19 31 0.00015 0.2 12.6 1.9 1 23 783 805 783 806 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF521-203 - 1311 6.1e-70 225.8 215.4 20 31 0.004 5.5 8.1 1.6 1 24 809 832 809 832 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF521-203 - 1311 6.1e-70 225.8 215.4 21 31 0.0012 1.7 9.7 0.0 2 24 887 909 886 909 0.81 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF521-203 - 1311 6.1e-70 225.8 215.4 22 31 2.8e-07 0.00038 21.0 0.8 1 23 930 952 930 953 0.97 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF521-203 - 1311 6.1e-70 225.8 215.4 23 31 1.2e-05 0.016 16.0 0.2 1 23 959 981 959 982 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF521-203 - 1311 6.1e-70 225.8 215.4 24 31 0.027 37 5.5 1.0 3 23 990 1010 989 1011 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF521-203 - 1311 6.1e-70 225.8 215.4 25 31 0.56 7.8e+02 1.4 0.2 1 19 1020 1038 1020 1042 0.90 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF521-203 - 1311 6.1e-70 225.8 215.4 26 31 0.051 71 4.7 0.3 1 17 1065 1081 1065 1082 0.91 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF521-203 - 1311 6.1e-70 225.8 215.4 27 31 5.9e-05 0.082 13.8 0.4 2 24 1139 1161 1138 1161 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF521-203 - 1311 6.1e-70 225.8 215.4 28 31 0.0048 6.6 7.9 0.1 1 23 1195 1217 1195 1218 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF521-203 - 1311 6.1e-70 225.8 215.4 29 31 9.1e-05 0.13 13.2 2.7 1 23 1225 1247 1225 1248 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF521-203 - 1311 6.1e-70 225.8 215.4 30 31 2.4e-05 0.033 15.0 0.6 1 24 1256 1279 1256 1279 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF521-203 - 1311 6.1e-70 225.8 215.4 31 31 0.0017 2.3 9.3 1.0 3 24 1288 1309 1286 1309 0.93 C2H2-type zinc finger zf-C2H2 PF00096.26 23 ZNF521-203 - 1311 1.1e-51 170.5 221.0 1 31 0.23 3.2e+02 2.1 0.2 1 20 47 66 47 68 0.91 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF521-203 - 1311 1.1e-51 170.5 221.0 2 31 1.4e-06 0.0019 18.6 4.1 1 23 118 140 118 140 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF521-203 - 1311 1.1e-51 170.5 221.0 3 31 0.0017 2.4 8.8 6.5 1 23 146 168 146 168 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF521-203 - 1311 1.1e-51 170.5 221.0 4 31 8.7e-07 0.0012 19.2 3.0 1 23 174 196 174 196 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF521-203 - 1311 1.1e-51 170.5 221.0 5 31 0.00055 0.76 10.4 1.2 1 23 202 224 202 224 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF521-203 - 1311 1.1e-51 170.5 221.0 6 31 0.00014 0.2 12.2 0.4 2 23 247 269 246 269 0.95 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF521-203 - 1311 1.1e-51 170.5 221.0 7 31 0.0017 2.3 8.9 0.4 2 23 282 304 281 304 0.94 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF521-203 - 1311 1.1e-51 170.5 221.0 8 31 0.00022 0.3 11.6 1.1 3 23 312 332 311 332 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF521-203 - 1311 1.1e-51 170.5 221.0 9 31 0.21 3e+02 2.2 0.4 1 23 405 429 405 429 0.90 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF521-203 - 1311 1.1e-51 170.5 221.0 10 31 0.00074 1 10.0 0.3 1 23 437 460 437 460 0.94 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF521-203 - 1311 1.1e-51 170.5 221.0 11 31 0.0017 2.3 8.8 1.1 1 21 477 497 477 500 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF521-203 - 1311 1.1e-51 170.5 221.0 12 31 0.0013 1.9 9.1 0.9 1 23 513 536 513 536 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF521-203 - 1311 1.1e-51 170.5 221.0 13 31 0.003 4.2 8.0 0.6 1 23 560 585 560 585 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF521-203 - 1311 1.1e-51 170.5 221.0 14 31 2e-05 0.027 14.9 0.8 1 23 634 656 634 656 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF521-203 - 1311 1.1e-51 170.5 221.0 15 31 1.3e-06 0.0018 18.6 0.2 2 23 665 686 664 686 0.95 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF521-203 - 1311 1.1e-51 170.5 221.0 16 31 1.9e-05 0.026 15.0 0.2 1 23 694 717 694 717 0.93 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF521-203 - 1311 1.1e-51 170.5 221.0 17 31 0.00088 1.2 9.7 0.2 1 23 722 745 722 745 0.95 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF521-203 - 1311 1.1e-51 170.5 221.0 18 31 0.00022 0.31 11.6 1.9 1 23 752 775 752 775 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF521-203 - 1311 1.1e-51 170.5 221.0 19 31 0.062 86 3.9 1.6 1 23 783 805 783 805 0.92 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF521-203 - 1311 1.1e-51 170.5 221.0 20 31 0.00018 0.25 11.9 1.4 1 23 809 832 809 832 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF521-203 - 1311 1.1e-51 170.5 221.0 21 31 0.00083 1.1 9.8 0.0 3 23 888 909 886 909 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF521-203 - 1311 1.1e-51 170.5 221.0 22 31 1.7e-06 0.0023 18.3 1.3 1 23 930 952 930 952 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF521-203 - 1311 1.1e-51 170.5 221.0 23 31 5.6e-05 0.077 13.5 0.1 1 23 959 981 959 981 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF521-203 - 1311 1.1e-51 170.5 221.0 24 31 3.7 5.1e+03 -1.7 1.0 3 23 990 1010 989 1010 0.82 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF521-203 - 1311 1.1e-51 170.5 221.0 25 31 1.4 2e+03 -0.4 0.3 1 19 1020 1038 1020 1042 0.86 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF521-203 - 1311 1.1e-51 170.5 221.0 26 31 0.041 56 4.5 0.4 1 18 1065 1082 1065 1082 0.93 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF521-203 - 1311 1.1e-51 170.5 221.0 27 31 3.7e-05 0.051 14.0 0.4 2 23 1139 1161 1138 1161 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF521-203 - 1311 1.1e-51 170.5 221.0 28 31 0.031 43 4.8 0.1 1 23 1195 1217 1195 1217 0.94 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF521-203 - 1311 1.1e-51 170.5 221.0 29 31 0.0089 12 6.5 2.2 1 23 1225 1247 1225 1247 0.93 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF521-203 - 1311 1.1e-51 170.5 221.0 30 31 2.9e-05 0.04 14.4 0.3 1 23 1256 1279 1256 1279 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF521-203 - 1311 1.1e-51 170.5 221.0 31 31 0.0002 0.28 11.7 1.6 1 23 1286 1309 1286 1309 0.97 Zinc finger, C2H2 type zf-C2H2_6 PF13912.6 27 ZNF521-203 - 1311 7.9e-34 115.0 183.1 1 27 8.1e-05 0.11 12.5 0.1 1 22 46 67 46 68 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF521-203 - 1311 7.9e-34 115.0 183.1 2 27 0.016 22 5.2 3.7 2 25 118 141 118 143 0.83 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF521-203 - 1311 7.9e-34 115.0 183.1 3 27 0.038 53 4.0 2.5 2 12 146 156 146 157 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF521-203 - 1311 7.9e-34 115.0 183.1 4 27 0.0014 2 8.5 3.4 2 24 174 196 173 198 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF521-203 - 1311 7.9e-34 115.0 183.1 5 27 0.011 15 5.7 1.5 2 25 202 225 202 226 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF521-203 - 1311 7.9e-34 115.0 183.1 6 27 1.4 1.9e+03 -1.0 0.8 3 11 247 255 247 256 0.88 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF521-203 - 1311 7.9e-34 115.0 183.1 7 27 0.00085 1.2 9.3 0.5 4 26 283 305 282 306 0.91 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF521-203 - 1311 7.9e-34 115.0 183.1 8 27 7.8e-06 0.011 15.7 0.8 4 26 312 334 311 335 0.95 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF521-203 - 1311 7.9e-34 115.0 183.1 9 27 0.017 24 5.1 0.3 2 26 405 431 404 432 0.88 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF521-203 - 1311 7.9e-34 115.0 183.1 10 27 6.2e-11 8.5e-08 32.0 0.2 1 26 436 462 436 463 0.92 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF521-203 - 1311 7.9e-34 115.0 183.1 11 27 1.2 1.7e+03 -0.8 0.9 1 10 476 485 476 500 0.77 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF521-203 - 1311 7.9e-34 115.0 183.1 12 27 0.47 6.5e+02 0.5 0.3 1 10 559 568 559 586 0.73 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF521-203 - 1311 7.9e-34 115.0 183.1 13 27 6.4e-07 0.00088 19.2 0.4 2 26 634 658 633 659 0.95 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF521-203 - 1311 7.9e-34 115.0 183.1 14 27 0.00051 0.7 10.0 0.1 4 20 666 682 665 686 0.92 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF521-203 - 1311 7.9e-34 115.0 183.1 15 27 1.5e-05 0.021 14.8 0.1 1 21 693 713 693 715 0.95 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF521-203 - 1311 7.9e-34 115.0 183.1 16 27 0.047 65 3.7 0.2 2 13 722 733 721 742 0.91 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF521-203 - 1311 7.9e-34 115.0 183.1 17 27 0.041 57 3.9 0.4 1 24 751 775 751 777 0.80 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF521-203 - 1311 7.9e-34 115.0 183.1 18 27 0.0027 3.7 7.6 2.7 1 26 782 807 782 808 0.92 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF521-203 - 1311 7.9e-34 115.0 183.1 19 27 0.0078 11 6.2 2.2 2 25 809 832 808 832 0.88 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF521-203 - 1311 7.9e-34 115.0 183.1 20 27 0.031 43 4.3 0.0 2 14 886 898 885 909 0.82 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF521-203 - 1311 7.9e-34 115.0 183.1 21 27 5.5e-08 7.5e-05 22.6 0.3 2 25 930 953 929 955 0.95 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF521-203 - 1311 7.9e-34 115.0 183.1 22 27 6.9e-07 0.00095 19.1 0.3 1 26 958 983 958 984 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF521-203 - 1311 7.9e-34 115.0 183.1 23 27 0.00051 0.71 9.9 0.6 2 17 1065 1080 1064 1082 0.92 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF521-203 - 1311 7.9e-34 115.0 183.1 24 27 0.0033 4.5 7.4 0.4 2 21 1138 1157 1137 1163 0.81 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF521-203 - 1311 7.9e-34 115.0 183.1 25 27 0.02 27 4.9 2.1 2 14 1225 1237 1224 1248 0.76 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF521-203 - 1311 7.9e-34 115.0 183.1 26 27 0.84 1.2e+03 -0.3 0.9 2 11 1256 1265 1255 1267 0.79 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF521-203 - 1311 7.9e-34 115.0 183.1 27 27 2.2 3e+03 -1.6 0.5 2 24 1286 1309 1285 1311 0.70 C2H2-type zinc finger zf-Di19 PF05605.12 54 ZNF521-203 - 1311 1e-22 80.1 170.9 1 20 0.00078 1.1 9.6 5.1 3 51 118 167 117 172 0.80 Drought induced 19 protein (Di19), zinc-binding zf-Di19 PF05605.12 54 ZNF521-203 - 1311 1e-22 80.1 170.9 2 20 0.031 43 4.5 3.9 3 52 174 224 172 226 0.73 Drought induced 19 protein (Di19), zinc-binding zf-Di19 PF05605.12 54 ZNF521-203 - 1311 1e-22 80.1 170.9 3 20 1.1 1.5e+03 -0.4 2.8 4 27 247 271 244 275 0.81 Drought induced 19 protein (Di19), zinc-binding zf-Di19 PF05605.12 54 ZNF521-203 - 1311 1e-22 80.1 170.9 4 20 5.7e-07 0.00079 19.7 6.0 3 51 281 331 279 334 0.83 Drought induced 19 protein (Di19), zinc-binding zf-Di19 PF05605.12 54 ZNF521-203 - 1311 1e-22 80.1 170.9 5 20 0.00011 0.15 12.4 3.5 2 53 404 460 403 461 0.83 Drought induced 19 protein (Di19), zinc-binding zf-Di19 PF05605.12 54 ZNF521-203 - 1311 1e-22 80.1 170.9 6 20 0.0033 4.5 7.6 0.3 3 28 477 503 476 507 0.88 Drought induced 19 protein (Di19), zinc-binding zf-Di19 PF05605.12 54 ZNF521-203 - 1311 1e-22 80.1 170.9 7 20 3.5e-06 0.0048 17.2 0.8 2 27 512 538 511 542 0.90 Drought induced 19 protein (Di19), zinc-binding zf-Di19 PF05605.12 54 ZNF521-203 - 1311 1e-22 80.1 170.9 8 20 0.034 46 4.4 0.1 3 26 560 586 558 589 0.80 Drought induced 19 protein (Di19), zinc-binding zf-Di19 PF05605.12 54 ZNF521-203 - 1311 1e-22 80.1 170.9 9 20 0.72 1e+03 0.1 0.1 3 23 634 655 631 659 0.54 Drought induced 19 protein (Di19), zinc-binding zf-Di19 PF05605.12 54 ZNF521-203 - 1311 1e-22 80.1 170.9 10 20 4.8e-08 6.6e-05 23.1 3.4 3 53 664 717 662 718 0.87 Drought induced 19 protein (Di19), zinc-binding zf-Di19 PF05605.12 54 ZNF521-203 - 1311 1e-22 80.1 170.9 11 20 7.6e-05 0.1 12.9 3.9 3 53 722 775 721 776 0.79 Drought induced 19 protein (Di19), zinc-binding zf-Di19 PF05605.12 54 ZNF521-203 - 1311 1e-22 80.1 170.9 12 20 0.011 15 6.0 0.9 4 25 784 805 781 808 0.83 Drought induced 19 protein (Di19), zinc-binding zf-Di19 PF05605.12 54 ZNF521-203 - 1311 1e-22 80.1 170.9 13 20 0.0026 3.6 7.9 3.1 2 30 808 837 807 857 0.79 Drought induced 19 protein (Di19), zinc-binding zf-Di19 PF05605.12 54 ZNF521-203 - 1311 1e-22 80.1 170.9 14 20 1.1 1.5e+03 -0.4 0.0 3 25 886 909 884 913 0.65 Drought induced 19 protein (Di19), zinc-binding zf-Di19 PF05605.12 54 ZNF521-203 - 1311 1e-22 80.1 170.9 15 20 1.3e-06 0.0018 18.5 2.9 2 42 929 969 928 982 0.84 Drought induced 19 protein (Di19), zinc-binding zf-Di19 PF05605.12 54 ZNF521-203 - 1311 1e-22 80.1 170.9 16 20 0.00022 0.3 11.4 4.6 3 51 959 1009 959 1013 0.81 Drought induced 19 protein (Di19), zinc-binding zf-Di19 PF05605.12 54 ZNF521-203 - 1311 1e-22 80.1 170.9 17 20 0.056 77 3.7 3.2 4 46 989 1034 986 1044 0.72 Drought induced 19 protein (Di19), zinc-binding zf-Di19 PF05605.12 54 ZNF521-203 - 1311 1e-22 80.1 170.9 18 20 0.093 1.3e+02 3.0 0.2 5 27 1140 1163 1137 1165 0.74 Drought induced 19 protein (Di19), zinc-binding zf-Di19 PF05605.12 54 ZNF521-203 - 1311 1e-22 80.1 170.9 19 20 0.96 1.3e+03 -0.3 5.0 3 49 1195 1244 1193 1248 0.75 Drought induced 19 protein (Di19), zinc-binding zf-Di19 PF05605.12 54 ZNF521-203 - 1311 1e-22 80.1 170.9 20 20 2.5e-07 0.00035 20.8 3.8 2 54 1255 1310 1254 1310 0.93 Drought induced 19 protein (Di19), zinc-binding zf-H2C2_2 PF13465.6 26 ZNF521-203 - 1311 8.3e-20 70.3 187.2 1 30 1.5 2e+03 -0.5 0.0 15 25 47 57 42 58 0.83 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF521-203 - 1311 8.3e-20 70.3 187.2 2 30 0.00072 0.99 10.0 0.4 14 25 117 128 102 129 0.89 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF521-203 - 1311 8.3e-20 70.3 187.2 3 30 0.0034 4.6 7.8 6.5 2 26 133 157 132 157 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF521-203 - 1311 8.3e-20 70.3 187.2 4 30 5e-09 6.8e-06 26.3 1.0 4 25 163 184 160 185 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF521-203 - 1311 8.3e-20 70.3 187.2 5 30 5.9e-07 0.00082 19.7 1.9 1 25 188 212 188 213 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF521-203 - 1311 8.3e-20 70.3 187.2 6 30 2 2.8e+03 -1.0 0.0 16 24 247 255 220 256 0.66 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF521-203 - 1311 8.3e-20 70.3 187.2 7 30 0.017 24 5.6 1.1 1 24 260 290 260 292 0.83 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF521-203 - 1311 8.3e-20 70.3 187.2 8 30 0.00082 1.1 9.8 0.3 1 25 295 320 295 321 0.88 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF521-203 - 1311 8.3e-20 70.3 187.2 9 30 5.2 7.2e+03 -2.2 0.0 2 12 325 335 324 336 0.82 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF521-203 - 1311 8.3e-20 70.3 187.2 10 30 0.65 9e+02 0.6 0.1 15 22 405 412 393 413 0.76 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF521-203 - 1311 8.3e-20 70.3 187.2 11 30 7.8 1.1e+04 -2.8 0.6 3 20 422 442 421 444 0.65 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF521-203 - 1311 8.3e-20 70.3 187.2 12 30 0.016 22 5.7 0.0 1 21 451 483 451 486 0.71 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF521-203 - 1311 8.3e-20 70.3 187.2 13 30 0.13 1.8e+02 2.8 0.7 2 25 492 523 491 524 0.65 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF521-203 - 1311 8.3e-20 70.3 187.2 14 30 5.2 7.2e+03 -2.3 1.9 14 20 555 565 527 568 0.55 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF521-203 - 1311 8.3e-20 70.3 187.2 15 30 0.56 7.7e+02 0.8 0.1 2 10 577 586 576 589 0.84 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF521-203 - 1311 8.3e-20 70.3 187.2 16 30 0.001 1.4 9.5 0.5 2 24 649 673 648 675 0.76 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF521-203 - 1311 8.3e-20 70.3 187.2 17 30 0.044 60 4.3 0.2 4 26 681 705 678 705 0.69 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF521-203 - 1311 8.3e-20 70.3 187.2 18 30 0.0032 4.5 7.9 0.2 1 25 708 732 708 733 0.86 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF521-203 - 1311 8.3e-20 70.3 187.2 19 30 0.00092 1.3 9.6 0.1 5 21 740 758 737 763 0.85 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF521-203 - 1311 8.3e-20 70.3 187.2 20 30 0.00093 1.3 9.6 0.6 2 26 767 794 766 794 0.79 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF521-203 - 1311 8.3e-20 70.3 187.2 21 30 0.014 19 5.9 6.3 5 24 801 818 797 819 0.84 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF521-203 - 1311 8.3e-20 70.3 187.2 22 30 6.7 9.3e+03 -2.6 0.8 2 9 824 832 824 832 0.79 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF521-203 - 1311 8.3e-20 70.3 187.2 23 30 0.031 43 4.8 0.1 4 24 903 939 901 941 0.58 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF521-203 - 1311 8.3e-20 70.3 187.2 24 30 8.8e-06 0.012 16.0 0.4 1 24 944 968 944 970 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF521-203 - 1311 8.3e-20 70.3 187.2 25 30 0.002 2.8 8.5 0.1 9 25 1059 1075 1056 1076 0.88 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF521-203 - 1311 8.3e-20 70.3 187.2 26 30 1.2 1.7e+03 -0.2 0.3 16 25 1139 1148 1136 1149 0.88 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF521-203 - 1311 8.3e-20 70.3 187.2 27 30 0.063 88 3.8 0.3 12 24 1192 1204 1188 1206 0.81 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF521-203 - 1311 8.3e-20 70.3 187.2 28 30 0.0044 6 7.5 0.0 5 25 1213 1235 1210 1236 0.75 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF521-203 - 1311 8.3e-20 70.3 187.2 29 30 0.036 49 4.6 0.7 5 24 1243 1265 1239 1267 0.77 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF521-203 - 1311 8.3e-20 70.3 187.2 30 30 0.0033 4.6 7.8 0.2 2 24 1271 1295 1270 1296 0.88 Zinc-finger double domain zf-C2H2_jaz PF12171.8 27 ZNF521-203 - 1311 2.2e-08 34.2 181.6 1 28 0.00074 1 9.7 1.8 2 24 118 140 117 141 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF521-203 - 1311 2.2e-08 34.2 181.6 2 28 0.00042 0.58 10.5 0.7 2 22 146 166 145 166 0.95 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF521-203 - 1311 2.2e-08 34.2 181.6 3 28 0.034 47 4.4 2.7 4 24 176 196 173 196 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF521-203 - 1311 2.2e-08 34.2 181.6 4 28 0.0004 0.55 10.6 0.0 2 21 202 221 201 222 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF521-203 - 1311 2.2e-08 34.2 181.6 5 28 2.5 3.4e+03 -1.5 0.2 4 21 248 265 247 267 0.86 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF521-203 - 1311 2.2e-08 34.2 181.6 6 28 0.047 64 4.0 0.5 4 21 283 300 281 301 0.96 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF521-203 - 1311 2.2e-08 34.2 181.6 7 28 0.13 1.8e+02 2.6 2.1 4 25 312 333 309 333 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF521-203 - 1311 2.2e-08 34.2 181.6 8 28 0.0074 10 6.5 0.5 2 22 405 426 404 429 0.79 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF521-203 - 1311 2.2e-08 34.2 181.6 9 28 0.12 1.7e+02 2.7 0.3 4 22 479 497 476 497 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF521-203 - 1311 2.2e-08 34.2 181.6 10 28 0.00028 0.38 11.1 0.1 2 22 513 533 512 534 0.96 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF521-203 - 1311 2.2e-08 34.2 181.6 11 28 6.6 9.1e+03 -2.9 0.5 11 23 571 583 570 586 0.82 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF521-203 - 1311 2.2e-08 34.2 181.6 12 28 0.028 39 4.7 0.6 2 24 634 656 633 657 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF521-203 - 1311 2.2e-08 34.2 181.6 13 28 4.7e-05 0.064 13.6 0.1 2 21 664 683 663 684 0.91 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF521-203 - 1311 2.2e-08 34.2 181.6 14 28 9.9e-06 0.014 15.7 0.6 2 21 694 713 693 714 0.95 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF521-203 - 1311 2.2e-08 34.2 181.6 15 28 0.035 49 4.4 0.1 2 21 722 741 722 742 0.91 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF521-203 - 1311 2.2e-08 34.2 181.6 16 28 0.0038 5.2 7.5 0.2 2 22 752 772 751 772 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF521-203 - 1311 2.2e-08 34.2 181.6 17 28 0.029 40 4.6 1.1 2 24 783 805 782 807 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF521-203 - 1311 2.2e-08 34.2 181.6 18 28 0.0031 4.2 7.8 2.0 1 24 808 831 808 831 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF521-203 - 1311 2.2e-08 34.2 181.6 19 28 0.28 3.9e+02 1.5 0.0 4 21 888 905 886 906 0.95 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF521-203 - 1311 2.2e-08 34.2 181.6 20 28 2.2e-05 0.03 14.6 0.6 2 24 930 952 929 953 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF521-203 - 1311 2.2e-08 34.2 181.6 21 28 0.14 1.9e+02 2.5 0.0 2 23 959 980 958 982 0.88 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF521-203 - 1311 2.2e-08 34.2 181.6 22 28 0.33 4.5e+02 1.3 1.0 4 21 990 1007 989 1008 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF521-203 - 1311 2.2e-08 34.2 181.6 23 28 4.8 6.7e+03 -2.4 0.2 2 7 1020 1025 1019 1025 0.91 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF521-203 - 1311 2.2e-08 34.2 181.6 24 28 1.8 2.5e+03 -1.1 0.6 2 18 1065 1081 1065 1082 0.88 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF521-203 - 1311 2.2e-08 34.2 181.6 25 28 3.8e-05 0.052 13.8 1.2 4 23 1140 1159 1139 1161 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF521-203 - 1311 2.2e-08 34.2 181.6 26 28 7.7 1.1e+04 -3.1 0.4 4 20 1197 1213 1195 1215 0.78 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF521-203 - 1311 2.2e-08 34.2 181.6 27 28 0.29 4e+02 1.5 1.8 2 21 1225 1244 1224 1248 0.85 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF521-203 - 1311 2.2e-08 34.2 181.6 28 28 0.54 7.4e+02 0.6 0.5 2 21 1256 1275 1255 1277 0.91 Zinc-finger double-stranded RNA-binding # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF521-203.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF521-203.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF521-203.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF521-203.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF521-203.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:07:57 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF521-204.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF521-204.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF521-204.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF521-204.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF521-204.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:07:57 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF521-205.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF521-205.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF521-205.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF521-205.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF521-205.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:07:58 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF521-206.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF521-206.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF521-206.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF521-206.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF521-206.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:07:58 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF521-207.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF521-207.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF521-207.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF521-207.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF521-207.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:07:59 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF521-208.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF521-208.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF521-208.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF521-208.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF521-208.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:07:59 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF521-209.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF521-209.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF521-209.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF521-209.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF521-209.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:07:59 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF521-210.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF521-210.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF521-210.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF521-210.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF521-210.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:08:00 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF521-211.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF521-211.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF521-211.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF521-211.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF521-211.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:08:00 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF521-212.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF521-212.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF521-212.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF521-212.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF521-212.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:08:00 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF521-213.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF521-213.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF521-213.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF521-213.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF521-213.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:08:01 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-C2H2_4 PF13894.6 24 ZNF521-214 - 1091 8.7e-63 203.5 168.4 1 26 0.00044 0.52 11.3 0.6 2 24 27 49 26 49 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF521-214 - 1091 8.7e-63 203.5 168.4 2 26 9e-05 0.11 13.4 0.7 2 24 62 84 61 84 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF521-214 - 1091 8.7e-63 203.5 168.4 3 26 1.2e-05 0.014 16.1 1.1 3 23 92 112 90 113 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF521-214 - 1091 8.7e-63 203.5 168.4 4 26 0.00038 0.46 11.5 0.5 1 24 185 209 185 209 0.82 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF521-214 - 1091 8.7e-63 203.5 168.4 5 26 0.00029 0.35 11.8 0.5 1 24 217 240 217 240 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF521-214 - 1091 8.7e-63 203.5 168.4 6 26 0.0016 1.9 9.6 0.1 1 21 257 277 257 277 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF521-214 - 1091 8.7e-63 203.5 168.4 7 26 0.00015 0.18 12.8 1.1 1 24 293 316 293 316 0.97 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF521-214 - 1091 8.7e-63 203.5 168.4 8 26 0.0033 3.9 8.6 0.5 1 24 340 365 340 365 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF521-214 - 1091 8.7e-63 203.5 168.4 9 26 1.5e-06 0.0018 19.0 0.4 1 23 414 436 414 437 0.97 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF521-214 - 1091 8.7e-63 203.5 168.4 10 26 2.8e-06 0.0033 18.1 0.3 2 23 445 466 444 467 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF521-214 - 1091 8.7e-63 203.5 168.4 11 26 2.8e-06 0.0033 18.1 0.2 1 24 474 497 474 497 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF521-214 - 1091 8.7e-63 203.5 168.4 12 26 0.00014 0.17 12.8 0.4 1 24 502 525 502 525 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF521-214 - 1091 8.7e-63 203.5 168.4 13 26 0.00063 0.76 10.8 1.3 1 24 532 555 532 555 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF521-214 - 1091 8.7e-63 203.5 168.4 14 26 0.00014 0.17 12.8 1.9 1 23 563 585 563 586 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF521-214 - 1091 8.7e-63 203.5 168.4 15 26 0.0038 4.5 8.4 1.6 1 24 589 612 589 612 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF521-214 - 1091 8.7e-63 203.5 168.4 16 26 0.0011 1.4 10.0 0.0 2 24 667 689 666 689 0.81 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF521-214 - 1091 8.7e-63 203.5 168.4 17 26 2.6e-07 0.00031 21.3 0.8 1 23 710 732 710 733 0.97 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF521-214 - 1091 8.7e-63 203.5 168.4 18 26 1.1e-05 0.013 16.3 0.2 1 23 739 761 739 762 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF521-214 - 1091 8.7e-63 203.5 168.4 19 26 0.025 30 5.8 1.0 3 23 770 790 769 791 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF521-214 - 1091 8.7e-63 203.5 168.4 20 26 0.53 6.3e+02 1.7 0.2 1 19 800 818 800 822 0.90 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF521-214 - 1091 8.7e-63 203.5 168.4 21 26 0.048 58 4.9 0.3 1 17 845 861 845 862 0.91 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF521-214 - 1091 8.7e-63 203.5 168.4 22 26 5.6e-05 0.066 14.1 0.4 2 24 919 941 918 941 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF521-214 - 1091 8.7e-63 203.5 168.4 23 26 0.0045 5.4 8.1 0.1 1 23 975 997 975 998 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF521-214 - 1091 8.7e-63 203.5 168.4 24 26 8.5e-05 0.1 13.5 2.7 1 23 1005 1027 1005 1028 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF521-214 - 1091 8.7e-63 203.5 168.4 25 26 2.2e-05 0.027 15.3 0.6 1 24 1036 1059 1036 1059 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF521-214 - 1091 8.7e-63 203.5 168.4 26 26 0.0016 1.9 9.6 1.0 3 24 1068 1089 1066 1089 0.93 C2H2-type zinc finger zf-C2H2 PF00096.26 23 ZNF521-214 - 1091 4.1e-44 146.6 170.6 1 26 0.00013 0.16 12.5 0.4 2 23 27 49 26 49 0.95 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF521-214 - 1091 4.1e-44 146.6 170.6 2 26 0.0016 1.9 9.1 0.4 2 23 62 84 61 84 0.94 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF521-214 - 1091 4.1e-44 146.6 170.6 3 26 0.0002 0.24 11.9 1.1 3 23 92 112 91 112 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF521-214 - 1091 4.1e-44 146.6 170.6 4 26 0.2 2.4e+02 2.5 0.4 1 23 185 209 185 209 0.90 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF521-214 - 1091 4.1e-44 146.6 170.6 5 26 0.00069 0.83 10.2 0.3 1 23 217 240 217 240 0.94 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF521-214 - 1091 4.1e-44 146.6 170.6 6 26 0.0016 1.9 9.1 1.1 1 21 257 277 257 280 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF521-214 - 1091 4.1e-44 146.6 170.6 7 26 0.0013 1.5 9.4 0.9 1 23 293 316 293 316 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF521-214 - 1091 4.1e-44 146.6 170.6 8 26 0.0028 3.4 8.3 0.6 1 23 340 365 340 365 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF521-214 - 1091 4.1e-44 146.6 170.6 9 26 1.9e-05 0.022 15.2 0.8 1 23 414 436 414 436 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF521-214 - 1091 4.1e-44 146.6 170.6 10 26 1.2e-06 0.0014 18.9 0.2 2 23 445 466 444 466 0.95 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF521-214 - 1091 4.1e-44 146.6 170.6 11 26 1.7e-05 0.021 15.3 0.2 1 23 474 497 474 497 0.93 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF521-214 - 1091 4.1e-44 146.6 170.6 12 26 0.00083 0.99 10.0 0.2 1 23 502 525 502 525 0.95 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF521-214 - 1091 4.1e-44 146.6 170.6 13 26 0.00021 0.25 11.9 1.9 1 23 532 555 532 555 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF521-214 - 1091 4.1e-44 146.6 170.6 14 26 0.058 70 4.2 1.6 1 23 563 585 563 585 0.92 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF521-214 - 1091 4.1e-44 146.6 170.6 15 26 0.00017 0.2 12.2 1.4 1 23 589 612 589 612 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF521-214 - 1091 4.1e-44 146.6 170.6 16 26 0.00078 0.93 10.1 0.0 3 23 668 689 666 689 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF521-214 - 1091 4.1e-44 146.6 170.6 17 26 1.6e-06 0.0019 18.6 1.3 1 23 710 732 710 732 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF521-214 - 1091 4.1e-44 146.6 170.6 18 26 5.2e-05 0.063 13.8 0.1 1 23 739 761 739 761 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF521-214 - 1091 4.1e-44 146.6 170.6 19 26 3.5 4.2e+03 -1.4 1.0 3 23 770 790 769 790 0.82 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF521-214 - 1091 4.1e-44 146.6 170.6 20 26 1.3 1.6e+03 -0.1 0.3 1 19 800 818 800 822 0.86 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF521-214 - 1091 4.1e-44 146.6 170.6 21 26 0.038 46 4.7 0.4 1 18 845 862 845 862 0.93 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF521-214 - 1091 4.1e-44 146.6 170.6 22 26 3.5e-05 0.042 14.3 0.4 2 23 919 941 918 941 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF521-214 - 1091 4.1e-44 146.6 170.6 23 26 0.03 35 5.1 0.1 1 23 975 997 975 997 0.94 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF521-214 - 1091 4.1e-44 146.6 170.6 24 26 0.0084 10 6.8 2.2 1 23 1005 1027 1005 1027 0.93 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF521-214 - 1091 4.1e-44 146.6 170.6 25 26 2.7e-05 0.033 14.7 0.3 1 23 1036 1059 1036 1059 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF521-214 - 1091 4.1e-44 146.6 170.6 26 26 0.00019 0.23 12.0 1.6 1 23 1066 1089 1066 1089 0.97 Zinc finger, C2H2 type zf-C2H2_6 PF13912.6 27 ZNF521-214 - 1091 8.8e-33 111.7 137.4 1 22 1.3 1.5e+03 -0.7 0.8 3 11 27 35 27 36 0.88 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF521-214 - 1091 8.8e-33 111.7 137.4 2 22 0.0008 0.95 9.5 0.5 4 26 63 85 62 86 0.91 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF521-214 - 1091 8.8e-33 111.7 137.4 3 22 7.3e-06 0.0088 16.0 0.8 4 26 92 114 91 115 0.95 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF521-214 - 1091 8.8e-33 111.7 137.4 4 22 0.016 19 5.4 0.3 2 26 185 211 184 212 0.88 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF521-214 - 1091 8.8e-33 111.7 137.4 5 22 5.8e-11 6.9e-08 32.3 0.2 1 26 216 242 216 243 0.92 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF521-214 - 1091 8.8e-33 111.7 137.4 6 22 1.2 1.4e+03 -0.5 0.9 1 10 256 265 256 280 0.76 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF521-214 - 1091 8.8e-33 111.7 137.4 7 22 0.45 5.3e+02 0.8 0.3 1 10 339 348 339 366 0.72 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF521-214 - 1091 8.8e-33 111.7 137.4 8 22 6e-07 0.00072 19.5 0.4 2 26 414 438 413 439 0.95 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF521-214 - 1091 8.8e-33 111.7 137.4 9 22 0.00048 0.57 10.2 0.1 4 20 446 462 445 466 0.92 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF521-214 - 1091 8.8e-33 111.7 137.4 10 22 1.5e-05 0.017 15.1 0.1 1 21 473 493 473 495 0.95 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF521-214 - 1091 8.8e-33 111.7 137.4 11 22 0.045 54 4.0 0.2 2 13 502 513 501 522 0.91 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF521-214 - 1091 8.8e-33 111.7 137.4 12 22 0.039 47 4.1 0.4 1 24 531 555 531 557 0.80 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF521-214 - 1091 8.8e-33 111.7 137.4 13 22 0.0026 3.1 7.9 2.7 1 26 562 587 562 588 0.92 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF521-214 - 1091 8.8e-33 111.7 137.4 14 22 0.007 8.3 6.5 2.1 2 25 589 612 588 612 0.88 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF521-214 - 1091 8.8e-33 111.7 137.4 15 22 0.03 35 4.5 0.0 2 14 666 678 665 689 0.82 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF521-214 - 1091 8.8e-33 111.7 137.4 16 22 5.2e-08 6.2e-05 22.9 0.3 2 25 710 733 709 735 0.95 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF521-214 - 1091 8.8e-33 111.7 137.4 17 22 6.5e-07 0.00077 19.4 0.3 1 26 738 763 738 764 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF521-214 - 1091 8.8e-33 111.7 137.4 18 22 0.00049 0.58 10.2 0.6 2 17 845 860 844 862 0.92 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF521-214 - 1091 8.8e-33 111.7 137.4 19 22 0.0031 3.7 7.7 0.4 2 21 918 937 917 943 0.81 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF521-214 - 1091 8.8e-33 111.7 137.4 20 22 0.019 22 5.2 2.1 2 14 1005 1017 1004 1028 0.75 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF521-214 - 1091 8.8e-33 111.7 137.4 21 22 0.8 9.5e+02 -0.0 0.9 2 11 1036 1045 1035 1047 0.79 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF521-214 - 1091 8.8e-33 111.7 137.4 22 22 2.1 2.5e+03 -1.4 0.5 2 24 1066 1089 1065 1091 0.70 C2H2-type zinc finger zf-Di19 PF05605.12 54 ZNF521-214 - 1091 1.1e-23 83.3 146.2 1 18 1 1.2e+03 -0.1 2.8 4 27 27 51 24 55 0.81 Drought induced 19 protein (Di19), zinc-binding zf-Di19 PF05605.12 54 ZNF521-214 - 1091 1.1e-23 83.3 146.2 2 18 5.3e-07 0.00063 20.0 6.0 3 51 61 111 59 114 0.83 Drought induced 19 protein (Di19), zinc-binding zf-Di19 PF05605.12 54 ZNF521-214 - 1091 1.1e-23 83.3 146.2 3 18 9.8e-05 0.12 12.7 3.5 2 53 184 240 183 241 0.83 Drought induced 19 protein (Di19), zinc-binding zf-Di19 PF05605.12 54 ZNF521-214 - 1091 1.1e-23 83.3 146.2 4 18 0.0031 3.7 7.9 0.3 3 28 257 283 256 287 0.88 Drought induced 19 protein (Di19), zinc-binding zf-Di19 PF05605.12 54 ZNF521-214 - 1091 1.1e-23 83.3 146.2 5 18 3.3e-06 0.0039 17.5 0.8 2 27 292 318 291 322 0.90 Drought induced 19 protein (Di19), zinc-binding zf-Di19 PF05605.12 54 ZNF521-214 - 1091 1.1e-23 83.3 146.2 6 18 0.032 38 4.7 0.1 3 26 340 366 338 369 0.80 Drought induced 19 protein (Di19), zinc-binding zf-Di19 PF05605.12 54 ZNF521-214 - 1091 1.1e-23 83.3 146.2 7 18 0.68 8.2e+02 0.4 0.1 3 23 414 435 411 439 0.54 Drought induced 19 protein (Di19), zinc-binding zf-Di19 PF05605.12 54 ZNF521-214 - 1091 1.1e-23 83.3 146.2 8 18 4.4e-08 5.3e-05 23.4 3.4 3 53 444 497 442 498 0.87 Drought induced 19 protein (Di19), zinc-binding zf-Di19 PF05605.12 54 ZNF521-214 - 1091 1.1e-23 83.3 146.2 9 18 8.4e-05 0.1 12.9 4.2 3 53 502 555 501 556 0.79 Drought induced 19 protein (Di19), zinc-binding zf-Di19 PF05605.12 54 ZNF521-214 - 1091 1.1e-23 83.3 146.2 10 18 0.011 13 6.2 0.9 4 25 564 585 561 588 0.83 Drought induced 19 protein (Di19), zinc-binding zf-Di19 PF05605.12 54 ZNF521-214 - 1091 1.1e-23 83.3 146.2 11 18 0.0024 2.9 8.2 3.1 2 30 588 617 587 637 0.79 Drought induced 19 protein (Di19), zinc-binding zf-Di19 PF05605.12 54 ZNF521-214 - 1091 1.1e-23 83.3 146.2 12 18 1 1.2e+03 -0.1 0.0 3 25 666 689 664 693 0.65 Drought induced 19 protein (Di19), zinc-binding zf-Di19 PF05605.12 54 ZNF521-214 - 1091 1.1e-23 83.3 146.2 13 18 1.1e-06 0.0014 18.9 2.8 2 42 709 749 708 762 0.84 Drought induced 19 protein (Di19), zinc-binding zf-Di19 PF05605.12 54 ZNF521-214 - 1091 1.1e-23 83.3 146.2 14 18 0.00026 0.31 11.4 6.2 2 51 738 789 737 792 0.81 Drought induced 19 protein (Di19), zinc-binding zf-Di19 PF05605.12 54 ZNF521-214 - 1091 1.1e-23 83.3 146.2 15 18 0.052 63 4.0 3.2 4 46 769 814 766 824 0.72 Drought induced 19 protein (Di19), zinc-binding zf-Di19 PF05605.12 54 ZNF521-214 - 1091 1.1e-23 83.3 146.2 16 18 0.087 1e+02 3.3 0.2 5 27 920 943 917 945 0.74 Drought induced 19 protein (Di19), zinc-binding zf-Di19 PF05605.12 54 ZNF521-214 - 1091 1.1e-23 83.3 146.2 17 18 0.89 1.1e+03 0.0 5.0 3 49 975 1024 973 1028 0.75 Drought induced 19 protein (Di19), zinc-binding zf-Di19 PF05605.12 54 ZNF521-214 - 1091 1.1e-23 83.3 146.2 18 18 2.3e-07 0.00028 21.1 3.8 2 54 1035 1090 1034 1090 0.93 Drought induced 19 protein (Di19), zinc-binding zf-C2H2_2 PF12756.7 101 ZNF521-214 - 1091 8.7e-10 38.8 138.9 1 20 0.087 1e+02 3.3 0.8 46 75 21 49 16 60 0.80 C2H2 type zinc-finger (2 copies) zf-C2H2_2 PF12756.7 101 ZNF521-214 - 1091 8.7e-10 38.8 138.9 2 20 0.003 3.6 8.0 1.8 51 72 61 82 52 86 0.82 C2H2 type zinc-finger (2 copies) zf-C2H2_2 PF12756.7 101 ZNF521-214 - 1091 8.7e-10 38.8 138.9 3 20 0.0016 1.9 8.8 2.8 49 74 88 113 81 125 0.84 C2H2 type zinc-finger (2 copies) zf-C2H2_2 PF12756.7 101 ZNF521-214 - 1091 8.7e-10 38.8 138.9 4 20 0.00085 1 9.7 0.2 45 73 179 208 164 216 0.83 C2H2 type zinc-finger (2 copies) zf-C2H2_2 PF12756.7 101 ZNF521-214 - 1091 8.7e-10 38.8 138.9 5 20 0.067 80 3.7 0.3 48 72 214 238 208 245 0.85 C2H2 type zinc-finger (2 copies) zf-C2H2_2 PF12756.7 101 ZNF521-214 - 1091 8.7e-10 38.8 138.9 6 20 0.068 82 3.6 4.6 1 30 258 287 258 323 0.82 C2H2 type zinc-finger (2 copies) zf-C2H2_2 PF12756.7 101 ZNF521-214 - 1091 8.7e-10 38.8 138.9 7 20 0.014 16 5.9 0.0 47 79 336 369 327 380 0.81 C2H2 type zinc-finger (2 copies) zf-C2H2_2 PF12756.7 101 ZNF521-214 - 1091 8.7e-10 38.8 138.9 8 20 0.038 46 4.4 0.1 50 73 413 436 397 442 0.89 C2H2 type zinc-finger (2 copies) zf-C2H2_2 PF12756.7 101 ZNF521-214 - 1091 8.7e-10 38.8 138.9 9 20 0.0051 6.1 7.2 0.1 48 71 441 464 435 472 0.82 C2H2 type zinc-finger (2 copies) zf-C2H2_2 PF12756.7 101 ZNF521-214 - 1091 8.7e-10 38.8 138.9 10 20 0.0029 3.5 8.0 0.3 50 72 473 495 463 501 0.79 C2H2 type zinc-finger (2 copies) zf-C2H2_2 PF12756.7 101 ZNF521-214 - 1091 8.7e-10 38.8 138.9 11 20 0.0049 5.8 7.3 9.9 2 73 476 554 475 561 0.74 C2H2 type zinc-finger (2 copies) zf-C2H2_2 PF12756.7 101 ZNF521-214 - 1091 8.7e-10 38.8 138.9 12 20 0.044 52 4.3 2.1 47 73 560 585 553 589 0.79 C2H2 type zinc-finger (2 copies) zf-C2H2_2 PF12756.7 101 ZNF521-214 - 1091 8.7e-10 38.8 138.9 13 20 0.0092 11 6.4 2.8 49 81 587 618 583 625 0.84 C2H2 type zinc-finger (2 copies) zf-C2H2_2 PF12756.7 101 ZNF521-214 - 1091 8.7e-10 38.8 138.9 14 20 5.7e-05 0.068 13.5 0.5 36 72 695 731 667 734 0.78 C2H2 type zinc-finger (2 copies) zf-C2H2_2 PF12756.7 101 ZNF521-214 - 1091 8.7e-10 38.8 138.9 15 20 0.17 2e+02 2.4 0.1 50 70 738 758 732 767 0.85 C2H2 type zinc-finger (2 copies) zf-C2H2_2 PF12756.7 101 ZNF521-214 - 1091 8.7e-10 38.8 138.9 16 20 0.0011 1.3 9.4 0.3 50 86 917 952 902 963 0.79 C2H2 type zinc-finger (2 copies) zf-C2H2_2 PF12756.7 101 ZNF521-214 - 1091 8.7e-10 38.8 138.9 17 20 0.015 18 5.7 3.8 2 71 920 995 919 1002 0.58 C2H2 type zinc-finger (2 copies) zf-C2H2_2 PF12756.7 101 ZNF521-214 - 1091 8.7e-10 38.8 138.9 18 20 0.019 23 5.4 2.4 46 73 998 1027 992 1032 0.79 C2H2 type zinc-finger (2 copies) zf-C2H2_2 PF12756.7 101 ZNF521-214 - 1091 8.7e-10 38.8 138.9 19 20 0.029 34 4.8 0.7 45 73 1030 1058 1024 1083 0.73 C2H2 type zinc-finger (2 copies) zf-C2H2_2 PF12756.7 101 ZNF521-214 - 1091 8.7e-10 38.8 138.9 20 20 2.1 2.5e+03 -1.2 0.4 52 70 1067 1085 1059 1090 0.58 C2H2 type zinc-finger (2 copies) zf-H2C2_2 PF13465.6 26 ZNF521-214 - 1091 2.2e-08 34.2 148.1 1 25 3.9 4.7e+03 -1.7 0.2 16 24 27 35 22 36 0.84 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF521-214 - 1091 2.2e-08 34.2 148.1 2 25 0.016 19 5.9 1.1 1 24 40 70 40 72 0.83 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF521-214 - 1091 2.2e-08 34.2 148.1 3 25 0.00077 0.92 10.0 0.3 1 25 75 100 75 101 0.88 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF521-214 - 1091 2.2e-08 34.2 148.1 4 25 4.9 5.9e+03 -2.0 0.0 2 12 105 115 104 116 0.82 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF521-214 - 1091 2.2e-08 34.2 148.1 5 25 0.62 7.4e+02 0.9 0.1 15 22 185 192 173 193 0.76 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF521-214 - 1091 2.2e-08 34.2 148.1 6 25 7.3 8.8e+03 -2.5 0.6 3 20 202 222 201 224 0.65 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF521-214 - 1091 2.2e-08 34.2 148.1 7 25 0.015 18 6.0 0.0 1 21 231 263 231 266 0.71 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF521-214 - 1091 2.2e-08 34.2 148.1 8 25 0.12 1.5e+02 3.1 0.7 2 25 272 303 271 304 0.65 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF521-214 - 1091 2.2e-08 34.2 148.1 9 25 5.8 6.9e+03 -2.2 2.2 14 20 335 345 307 348 0.55 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF521-214 - 1091 2.2e-08 34.2 148.1 10 25 0.53 6.3e+02 1.1 0.1 2 10 357 366 356 369 0.84 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF521-214 - 1091 2.2e-08 34.2 148.1 11 25 0.00097 1.2 9.7 0.5 2 24 429 453 428 455 0.76 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF521-214 - 1091 2.2e-08 34.2 148.1 12 25 0.041 49 4.6 0.2 4 26 461 485 458 485 0.69 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF521-214 - 1091 2.2e-08 34.2 148.1 13 25 0.003 3.6 8.2 0.2 1 25 488 512 488 513 0.86 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF521-214 - 1091 2.2e-08 34.2 148.1 14 25 0.00086 1 9.9 0.1 5 21 520 538 517 543 0.85 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF521-214 - 1091 2.2e-08 34.2 148.1 15 25 0.00087 1 9.9 0.6 2 26 547 574 546 574 0.79 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF521-214 - 1091 2.2e-08 34.2 148.1 16 25 0.013 16 6.2 6.3 5 24 581 598 577 599 0.84 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF521-214 - 1091 2.2e-08 34.2 148.1 17 25 6.4 7.6e+03 -2.3 0.8 2 9 604 612 604 612 0.80 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF521-214 - 1091 2.2e-08 34.2 148.1 18 25 0.029 35 5.1 0.1 4 24 683 719 681 721 0.58 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF521-214 - 1091 2.2e-08 34.2 148.1 19 25 8.3e-06 0.0099 16.3 0.4 1 24 724 748 724 750 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF521-214 - 1091 2.2e-08 34.2 148.1 20 25 0.0019 2.3 8.8 0.1 9 25 839 855 836 856 0.88 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF521-214 - 1091 2.2e-08 34.2 148.1 21 25 1.1 1.4e+03 0.0 0.3 16 25 919 928 916 929 0.88 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF521-214 - 1091 2.2e-08 34.2 148.1 22 25 0.06 72 4.1 0.3 12 24 972 984 968 986 0.81 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF521-214 - 1091 2.2e-08 34.2 148.1 23 25 0.0041 4.9 7.8 0.0 5 25 993 1015 990 1016 0.75 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF521-214 - 1091 2.2e-08 34.2 148.1 24 25 0.034 40 4.9 0.7 5 24 1023 1045 1019 1047 0.77 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF521-214 - 1091 2.2e-08 34.2 148.1 25 25 0.0031 3.7 8.1 0.2 2 24 1051 1075 1050 1076 0.88 Zinc-finger double domain # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF521-214.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF521-214.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF521-214.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF521-214.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF521-214.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:08:01 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZNF524-201 - 264 3.4e-17 62.0 33.1 1 5 0.0096 7.5 7.2 0.5 12 24 111 123 107 125 0.82 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF524-201 - 264 3.4e-17 62.0 33.1 2 5 5.5e-09 4.3e-06 26.9 1.6 1 26 128 153 128 153 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF524-201 - 264 3.4e-17 62.0 33.1 3 5 4.9e-07 0.00038 20.7 4.0 1 24 156 179 156 180 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF524-201 - 264 3.4e-17 62.0 33.1 4 5 9e-08 7e-05 23.1 1.7 2 25 185 208 184 209 0.88 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF524-201 - 264 3.4e-17 62.0 33.1 5 5 0.25 1.9e+02 2.7 0.1 2 10 213 222 212 229 0.79 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZNF524-201 - 264 9.6e-16 57.3 32.7 1 4 2.3e-05 0.018 15.5 0.7 2 23 115 136 114 136 0.92 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF524-201 - 264 9.6e-16 57.3 32.7 2 4 4e-07 0.00031 21.0 7.9 1 23 142 164 142 164 0.92 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF524-201 - 264 9.6e-16 57.3 32.7 3 4 1.4e-06 0.0011 19.3 1.9 1 23 170 192 170 192 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF524-201 - 264 9.6e-16 57.3 32.7 4 4 4e-06 0.0031 17.9 1.0 1 23 198 221 198 221 0.98 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZNF524-201 - 264 3.1e-14 52.5 30.8 1 4 0.00022 0.17 12.8 0.9 2 23 115 136 114 137 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF524-201 - 264 3.1e-14 52.5 30.8 2 4 5.2e-06 0.004 17.9 6.2 1 23 142 164 142 165 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF524-201 - 264 3.1e-14 52.5 30.8 3 4 1.1e-05 0.0087 16.8 2.0 1 23 170 192 170 193 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF524-201 - 264 3.1e-14 52.5 30.8 4 4 4.4e-07 0.00035 21.2 0.7 1 24 198 221 198 221 0.97 C2H2-type zinc finger # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF524-201.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF524-201.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF524-201.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF524-201.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF524-201.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:08:02 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZNF524-203 - 264 3.4e-17 62.0 33.1 1 5 0.0096 7.5 7.2 0.5 12 24 111 123 107 125 0.82 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF524-203 - 264 3.4e-17 62.0 33.1 2 5 5.5e-09 4.3e-06 26.9 1.6 1 26 128 153 128 153 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF524-203 - 264 3.4e-17 62.0 33.1 3 5 4.9e-07 0.00038 20.7 4.0 1 24 156 179 156 180 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF524-203 - 264 3.4e-17 62.0 33.1 4 5 9e-08 7e-05 23.1 1.7 2 25 185 208 184 209 0.88 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF524-203 - 264 3.4e-17 62.0 33.1 5 5 0.25 1.9e+02 2.7 0.1 2 10 213 222 212 229 0.79 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZNF524-203 - 264 9.6e-16 57.3 32.7 1 4 2.3e-05 0.018 15.5 0.7 2 23 115 136 114 136 0.92 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF524-203 - 264 9.6e-16 57.3 32.7 2 4 4e-07 0.00031 21.0 7.9 1 23 142 164 142 164 0.92 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF524-203 - 264 9.6e-16 57.3 32.7 3 4 1.4e-06 0.0011 19.3 1.9 1 23 170 192 170 192 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF524-203 - 264 9.6e-16 57.3 32.7 4 4 4e-06 0.0031 17.9 1.0 1 23 198 221 198 221 0.98 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZNF524-203 - 264 3.1e-14 52.5 30.8 1 4 0.00022 0.17 12.8 0.9 2 23 115 136 114 137 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF524-203 - 264 3.1e-14 52.5 30.8 2 4 5.2e-06 0.004 17.9 6.2 1 23 142 164 142 165 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF524-203 - 264 3.1e-14 52.5 30.8 3 4 1.1e-05 0.0087 16.8 2.0 1 23 170 192 170 193 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF524-203 - 264 3.1e-14 52.5 30.8 4 4 4.4e-07 0.00035 21.2 0.7 1 24 198 221 198 221 0.97 C2H2-type zinc finger # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF524-203.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF524-203.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF524-203.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF524-203.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF524-203.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:08:02 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZNF525-201 - 443 1.1e-68 224.7 88.0 1 11 0.014 16 6.2 0.3 2 16 38 52 37 52 0.90 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF525-201 - 443 1.1e-68 224.7 88.0 2 11 0.62 6.9e+02 1.0 0.0 12 25 176 189 172 190 0.86 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF525-201 - 443 1.1e-68 224.7 88.0 3 11 1.2e-09 1.4e-06 28.5 0.1 2 24 194 216 194 218 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF525-201 - 443 1.1e-68 224.7 88.0 4 11 4.4e-11 4.9e-08 33.0 3.5 2 25 222 245 221 246 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF525-201 - 443 1.1e-68 224.7 88.0 5 11 5.7e-11 6.4e-08 32.7 5.0 1 26 249 274 249 274 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF525-201 - 443 1.1e-68 224.7 88.0 6 11 1.6e-12 1.8e-09 37.6 1.4 1 25 277 301 277 302 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF525-201 - 443 1.1e-68 224.7 88.0 7 11 1.5e-09 1.7e-06 28.2 2.0 5 25 309 329 306 329 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF525-201 - 443 1.1e-68 224.7 88.0 8 11 3.2e-11 3.6e-08 33.5 1.9 1 26 333 358 333 358 0.97 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF525-201 - 443 1.1e-68 224.7 88.0 9 11 5.5e-09 6.2e-06 26.4 2.8 5 24 365 384 362 386 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF525-201 - 443 1.1e-68 224.7 88.0 10 11 8.4e-11 9.4e-08 32.1 0.7 1 25 389 413 389 414 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF525-201 - 443 1.1e-68 224.7 88.0 11 11 8e-05 0.09 13.2 6.2 5 25 421 441 417 442 0.91 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZNF525-201 - 443 1.7e-32 110.1 112.5 1 11 2.3 2.6e+03 -0.8 1.7 13 23 35 45 31 45 0.85 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF525-201 - 443 1.7e-32 110.1 112.5 2 11 0.00074 0.83 10.2 0.1 7 23 185 201 185 201 0.95 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF525-201 - 443 1.7e-32 110.1 112.5 3 11 1.5e-06 0.0017 18.7 3.8 1 21 207 227 207 229 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF525-201 - 443 1.7e-32 110.1 112.5 4 11 5.2e-08 5.8e-05 23.3 4.0 1 23 235 257 235 257 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF525-201 - 443 1.7e-32 110.1 112.5 5 11 3.5e-09 4e-06 27.0 2.1 1 23 263 285 263 285 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF525-201 - 443 1.7e-32 110.1 112.5 6 11 1.5e-05 0.017 15.6 4.9 1 23 291 313 291 313 0.95 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF525-201 - 443 1.7e-32 110.1 112.5 7 11 9e-09 1e-05 25.7 0.5 1 23 319 341 319 341 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF525-201 - 443 1.7e-32 110.1 112.5 8 11 8.5e-06 0.0096 16.3 6.9 1 23 347 369 347 369 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF525-201 - 443 1.7e-32 110.1 112.5 9 11 1.4e-08 1.6e-05 25.1 0.9 1 23 375 397 375 397 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF525-201 - 443 1.7e-32 110.1 112.5 10 11 0.0011 1.2 9.7 5.1 1 21 403 423 403 425 0.82 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF525-201 - 443 1.7e-32 110.1 112.5 11 11 0.23 2.6e+02 2.4 3.0 2 11 432 441 431 443 0.84 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZNF525-201 - 443 5.1e-14 51.8 96.8 1 11 5.5 6.1e+03 -1.4 1.7 15 23 37 45 33 45 0.74 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF525-201 - 443 5.1e-14 51.8 96.8 2 11 0.14 1.6e+02 3.6 0.1 3 23 181 201 179 202 0.70 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF525-201 - 443 5.1e-14 51.8 96.8 3 11 0.00031 0.35 11.8 2.8 1 21 207 227 207 229 0.91 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF525-201 - 443 5.1e-14 51.8 96.8 4 11 3.8e-05 0.042 14.7 2.9 1 23 235 257 235 258 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF525-201 - 443 5.1e-14 51.8 96.8 5 11 1.9e-05 0.021 15.6 1.4 1 23 263 285 263 286 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF525-201 - 443 5.1e-14 51.8 96.8 6 11 0.0007 0.78 10.7 4.1 1 23 291 313 291 314 0.85 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF525-201 - 443 5.1e-14 51.8 96.8 7 11 3.2e-05 0.036 14.9 0.5 1 23 319 341 319 342 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF525-201 - 443 5.1e-14 51.8 96.8 8 11 0.00095 1.1 10.3 4.8 1 23 347 369 347 370 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF525-201 - 443 5.1e-14 51.8 96.8 9 11 3.2e-05 0.036 14.9 0.8 1 23 375 397 375 398 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF525-201 - 443 5.1e-14 51.8 96.8 10 11 0.00051 0.57 11.2 5.3 1 23 403 425 403 426 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF525-201 - 443 5.1e-14 51.8 96.8 11 11 3.5 4e+03 -0.8 2.1 2 11 432 441 431 443 0.83 C2H2-type zinc finger Zn-ribbon_8 PF09723.10 40 ZNF525-201 - 443 3.5e-08 33.4 49.3 1 7 0.053 59 3.9 0.7 5 15 206 216 206 231 0.84 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF525-201 - 443 3.5e-08 33.4 49.3 2 7 0.00026 0.29 11.3 0.1 6 20 235 249 234 256 0.88 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF525-201 - 443 3.5e-08 33.4 49.3 3 7 3.1e-05 0.035 14.2 3.3 6 36 263 300 262 304 0.85 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF525-201 - 443 3.5e-08 33.4 49.3 4 7 0.011 12 6.1 0.2 6 16 319 329 318 342 0.85 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF525-201 - 443 3.5e-08 33.4 49.3 5 7 0.00021 0.23 11.6 0.3 6 20 347 361 346 370 0.86 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF525-201 - 443 3.5e-08 33.4 49.3 6 7 0.012 13 6.0 0.3 6 16 375 385 374 398 0.83 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF525-201 - 443 3.5e-08 33.4 49.3 7 7 0.031 35 4.6 8.7 6 33 403 437 402 441 0.73 Zinc ribbon domain zf-C2H2_6 PF13912.6 27 ZNF525-201 - 443 5e-08 32.7 77.1 1 10 0.00076 0.85 9.7 3.9 2 24 207 229 206 232 0.86 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF525-201 - 443 5e-08 32.7 77.1 2 10 0.00017 0.19 11.8 2.8 2 21 235 254 235 259 0.84 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF525-201 - 443 5e-08 32.7 77.1 3 10 0.00095 1.1 9.4 0.9 2 24 263 285 263 288 0.90 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF525-201 - 443 5e-08 32.7 77.1 4 10 0.00032 0.36 10.9 1.3 2 12 291 301 291 302 0.95 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF525-201 - 443 5e-08 32.7 77.1 5 10 7 7.8e+03 -2.9 0.0 22 26 307 311 306 312 0.76 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF525-201 - 443 5e-08 32.7 77.1 6 10 4.2e-05 0.047 13.7 0.6 2 24 319 341 319 344 0.95 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF525-201 - 443 5e-08 32.7 77.1 7 10 0.041 46 4.2 4.0 2 22 347 367 347 372 0.78 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF525-201 - 443 5e-08 32.7 77.1 8 10 0.0058 6.5 6.9 0.5 2 24 375 397 375 400 0.87 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF525-201 - 443 5e-08 32.7 77.1 9 10 0.00088 0.99 9.5 4.1 2 18 403 419 402 427 0.80 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF525-201 - 443 5e-08 32.7 77.1 10 10 0.97 1.1e+03 -0.2 0.4 3 11 432 440 432 441 0.85 C2H2-type zinc finger zf-C2H2_jaz PF12171.8 27 ZNF525-201 - 443 4.8e-07 29.9 50.9 1 9 5.3e-05 0.06 13.7 0.3 1 21 206 226 206 227 0.91 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF525-201 - 443 4.8e-07 29.9 50.9 2 9 0.026 29 5.1 0.3 2 20 235 253 234 253 0.88 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF525-201 - 443 4.8e-07 29.9 50.9 3 9 7e-06 0.0079 16.5 0.4 2 21 263 282 262 283 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF525-201 - 443 4.8e-07 29.9 50.9 4 9 0.097 1.1e+02 3.3 0.3 2 12 291 301 290 306 0.89 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF525-201 - 443 4.8e-07 29.9 50.9 5 9 0.00059 0.66 10.3 0.6 2 21 319 338 318 341 0.87 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF525-201 - 443 4.8e-07 29.9 50.9 6 9 0.022 24 5.3 0.6 2 18 347 363 346 367 0.85 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF525-201 - 443 4.8e-07 29.9 50.9 7 9 0.031 35 4.8 0.2 2 21 375 394 374 395 0.85 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF525-201 - 443 4.8e-07 29.9 50.9 8 9 0.13 1.5e+02 2.8 2.5 2 18 403 419 402 423 0.82 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF525-201 - 443 4.8e-07 29.9 50.9 9 9 1.4 1.6e+03 -0.4 0.4 4 11 433 440 432 441 0.83 Zinc-finger double-stranded RNA-binding BolA PF01722.18 76 ZNF525-201 - 443 1e-06 28.9 13.4 1 5 0.28 3.2e+02 1.7 0.1 24 53 172 201 159 202 0.82 BolA-like protein BolA PF01722.18 76 ZNF525-201 - 443 1e-06 28.9 13.4 2 5 0.0018 2 8.8 0.1 20 51 195 227 183 230 0.80 BolA-like protein BolA PF01722.18 76 ZNF525-201 - 443 1e-06 28.9 13.4 3 5 0.00028 0.32 11.3 0.5 16 53 248 285 243 289 0.84 BolA-like protein BolA PF01722.18 76 ZNF525-201 - 443 1e-06 28.9 13.4 4 5 0.58 6.4e+02 0.7 0.0 37 53 297 313 285 315 0.82 BolA-like protein BolA PF01722.18 76 ZNF525-201 - 443 1e-06 28.9 13.4 5 5 0.0017 1.9 8.8 1.4 21 53 365 397 301 399 0.89 BolA-like protein # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF525-201.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF525-201.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF525-201.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF525-201.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF525-201.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:08:02 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZNF525-202 - 479 3.1e-68 223.3 88.0 1 11 0.015 17 6.0 0.3 2 16 74 88 73 88 0.90 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF525-202 - 479 3.1e-68 223.3 88.0 2 11 0.68 7.6e+02 0.8 0.0 12 25 212 225 208 226 0.86 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF525-202 - 479 3.1e-68 223.3 88.0 3 11 1.3e-09 1.5e-06 28.4 0.1 2 24 230 252 230 254 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF525-202 - 479 3.1e-68 223.3 88.0 4 11 4.8e-11 5.4e-08 32.9 3.5 2 25 258 281 257 282 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF525-202 - 479 3.1e-68 223.3 88.0 5 11 6.3e-11 7.1e-08 32.5 5.0 1 26 285 310 285 310 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF525-202 - 479 3.1e-68 223.3 88.0 6 11 1.7e-12 1.9e-09 37.5 1.4 1 25 313 337 313 338 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF525-202 - 479 3.1e-68 223.3 88.0 7 11 1.7e-09 1.9e-06 28.0 2.0 5 25 345 365 342 365 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF525-202 - 479 3.1e-68 223.3 88.0 8 11 3.5e-11 3.9e-08 33.4 1.9 1 26 369 394 369 394 0.97 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF525-202 - 479 3.1e-68 223.3 88.0 9 11 6.1e-09 6.8e-06 26.3 2.8 5 24 401 420 398 422 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF525-202 - 479 3.1e-68 223.3 88.0 10 11 9.3e-11 1e-07 32.0 0.7 1 25 425 449 425 450 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF525-202 - 479 3.1e-68 223.3 88.0 11 11 8.8e-05 0.099 13.1 6.2 5 25 457 477 453 478 0.92 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZNF525-202 - 479 4.6e-32 108.7 112.5 1 11 2.5 2.8e+03 -0.9 1.7 13 23 71 81 67 81 0.85 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF525-202 - 479 4.6e-32 108.7 112.5 2 11 0.00081 0.91 10.1 0.1 7 23 221 237 221 237 0.95 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF525-202 - 479 4.6e-32 108.7 112.5 3 11 1.7e-06 0.0019 18.6 3.8 1 21 243 263 243 265 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF525-202 - 479 4.6e-32 108.7 112.5 4 11 5.7e-08 6.4e-05 23.2 4.0 1 23 271 293 271 293 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF525-202 - 479 4.6e-32 108.7 112.5 5 11 3.9e-09 4.4e-06 26.9 2.1 1 23 299 321 299 321 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF525-202 - 479 4.6e-32 108.7 112.5 6 11 1.6e-05 0.018 15.5 4.9 1 23 327 349 327 349 0.95 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF525-202 - 479 4.6e-32 108.7 112.5 7 11 9.9e-09 1.1e-05 25.6 0.5 1 23 355 377 355 377 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF525-202 - 479 4.6e-32 108.7 112.5 8 11 9.4e-06 0.011 16.2 6.9 1 23 383 405 383 405 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF525-202 - 479 4.6e-32 108.7 112.5 9 11 1.6e-08 1.8e-05 24.9 0.9 1 23 411 433 411 433 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF525-202 - 479 4.6e-32 108.7 112.5 10 11 0.0012 1.3 9.6 5.1 1 21 439 459 439 461 0.82 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF525-202 - 479 4.6e-32 108.7 112.5 11 11 0.25 2.9e+02 2.2 3.0 2 11 468 477 467 479 0.84 Zinc finger, C2H2 type KRAB PF01352.27 42 ZNF525-202 - 479 2.1e-27 94.5 0.1 1 1 3.5e-30 4e-27 93.6 0.1 2 42 8 48 7 48 0.98 KRAB box zf-C2H2_4 PF13894.6 24 ZNF525-202 - 479 1.4e-13 50.4 96.8 1 11 6 6.7e+03 -1.5 1.7 15 23 73 81 69 81 0.74 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF525-202 - 479 1.4e-13 50.4 96.8 2 11 0.16 1.7e+02 3.4 0.1 3 23 217 237 215 238 0.70 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF525-202 - 479 1.4e-13 50.4 96.8 3 11 0.00034 0.39 11.7 2.8 1 21 243 263 243 265 0.91 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF525-202 - 479 1.4e-13 50.4 96.8 4 11 4.2e-05 0.047 14.5 2.9 1 23 271 293 271 294 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF525-202 - 479 1.4e-13 50.4 96.8 5 11 2.1e-05 0.024 15.5 1.4 1 23 299 321 299 322 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF525-202 - 479 1.4e-13 50.4 96.8 6 11 0.00077 0.86 10.6 4.1 1 23 327 349 327 350 0.85 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF525-202 - 479 1.4e-13 50.4 96.8 7 11 3.5e-05 0.039 14.8 0.5 1 23 355 377 355 378 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF525-202 - 479 1.4e-13 50.4 96.8 8 11 0.001 1.2 10.2 4.8 1 23 383 405 383 406 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF525-202 - 479 1.4e-13 50.4 96.8 9 11 3.5e-05 0.039 14.8 0.8 1 23 411 433 411 434 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF525-202 - 479 1.4e-13 50.4 96.8 10 11 0.00056 0.62 11.0 5.3 1 23 439 461 439 462 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF525-202 - 479 1.4e-13 50.4 96.8 11 11 3.9 4.3e+03 -0.9 2.1 2 11 468 477 467 479 0.83 C2H2-type zinc finger Zn-ribbon_8 PF09723.10 40 ZNF525-202 - 479 6.7e-08 32.5 49.2 1 7 0.058 65 3.8 0.7 5 15 242 252 242 267 0.84 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF525-202 - 479 6.7e-08 32.5 49.2 2 7 0.00028 0.32 11.2 0.1 6 20 271 285 270 292 0.88 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF525-202 - 479 6.7e-08 32.5 49.2 3 7 3.5e-05 0.039 14.1 3.3 6 36 299 336 298 340 0.85 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF525-202 - 479 6.7e-08 32.5 49.2 4 7 0.012 13 5.9 0.2 6 16 355 365 354 378 0.85 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF525-202 - 479 6.7e-08 32.5 49.2 5 7 0.00023 0.25 11.5 0.3 6 20 383 397 382 406 0.86 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF525-202 - 479 6.7e-08 32.5 49.2 6 7 0.013 14 5.8 0.3 6 16 411 421 410 434 0.83 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF525-202 - 479 6.7e-08 32.5 49.2 7 7 0.034 38 4.5 8.7 6 33 439 473 438 477 0.73 Zinc ribbon domain zf-C2H2_6 PF13912.6 27 ZNF525-202 - 479 9.3e-08 31.9 76.7 1 10 0.00073 0.82 9.7 3.7 2 24 243 265 242 268 0.85 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF525-202 - 479 9.3e-08 31.9 76.7 2 10 0.00018 0.2 11.7 2.8 2 21 271 290 271 295 0.84 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF525-202 - 479 9.3e-08 31.9 76.7 3 10 0.001 1.2 9.2 0.9 2 24 299 321 299 324 0.90 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF525-202 - 479 9.3e-08 31.9 76.7 4 10 0.00035 0.4 10.7 1.3 2 12 327 337 327 338 0.95 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF525-202 - 479 9.3e-08 31.9 76.7 5 10 7.6 8.5e+03 -3.1 0.0 22 26 343 347 342 348 0.76 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF525-202 - 479 9.3e-08 31.9 76.7 6 10 4.6e-05 0.051 13.6 0.6 2 24 355 377 355 380 0.95 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF525-202 - 479 9.3e-08 31.9 76.7 7 10 0.04 44 4.2 3.8 2 22 383 403 383 408 0.78 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF525-202 - 479 9.3e-08 31.9 76.7 8 10 0.0063 7.1 6.8 0.5 2 24 411 433 411 436 0.87 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF525-202 - 479 9.3e-08 31.9 76.7 9 10 0.00097 1.1 9.4 4.1 2 18 439 455 438 463 0.80 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF525-202 - 479 9.3e-08 31.9 76.7 10 10 1.1 1.2e+03 -0.3 0.4 3 11 468 476 468 477 0.85 C2H2-type zinc finger # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF525-202.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF525-202.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF525-202.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF525-202.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF525-202.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:08:03 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF525-203.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF525-203.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF525-203.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF525-203.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF525-203.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:08:03 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- KRAB PF01352.27 42 ZNF525-204 - 119 2.8e-28 97.3 0.1 1 1 2.3e-32 4.2e-28 96.7 0.1 1 42 7 48 7 48 0.98 KRAB box # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF525-204.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF525-204.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF525-204.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF525-204.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF525-204.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:08:04 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- KRAB PF01352.27 42 ZNF525-205 - 69 8.6e-29 98.9 0.1 1 1 6.1e-33 1.1e-28 98.6 0.1 1 42 7 48 7 48 0.98 KRAB box # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF525-205.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF525-205.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF525-205.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF525-205.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF525-205.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:08:04 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- KRAB PF01352.27 42 ZNF525-206 - 52 4.1e-29 100.0 0.1 1 1 2.5e-33 4.6e-29 99.8 0.1 1 42 7 48 7 48 0.98 KRAB box # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF525-206.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF525-206.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF525-206.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF525-206.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF525-206.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:08:04 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF525-207.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF525-207.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF525-207.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF525-207.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF525-207.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:08:04 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF525-208.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF525-208.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF525-208.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF525-208.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF525-208.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:08:05 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-C2H2 PF00096.26 23 ZNF526-201 - 670 2.3e-39 131.7 88.0 1 14 0.04 34 5.2 0.1 1 23 57 79 57 79 0.94 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF526-201 - 670 2.3e-39 131.7 88.0 2 14 0.42 3.6e+02 1.9 0.0 1 22 108 129 108 130 0.73 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF526-201 - 670 2.3e-39 131.7 88.0 3 14 0.00016 0.14 12.7 0.0 1 23 140 163 140 163 0.95 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF526-201 - 670 2.3e-39 131.7 88.0 4 14 0.0014 1.2 9.8 0.2 1 23 197 219 197 219 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF526-201 - 670 2.3e-39 131.7 88.0 5 14 0.28 2.4e+02 2.5 0.5 3 23 275 296 275 296 0.95 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF526-201 - 670 2.3e-39 131.7 88.0 6 14 0.00012 0.1 13.1 1.7 1 23 305 327 305 327 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF526-201 - 670 2.3e-39 131.7 88.0 7 14 5.3e-07 0.00045 20.5 1.4 1 23 332 354 332 354 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF526-201 - 670 2.3e-39 131.7 88.0 8 14 0.00018 0.16 12.5 0.0 1 23 360 382 360 382 0.95 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF526-201 - 670 2.3e-39 131.7 88.0 9 14 0.032 27 5.5 5.4 6 23 392 409 388 409 0.95 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF526-201 - 670 2.3e-39 131.7 88.0 10 14 2e-06 0.0017 18.7 0.4 2 23 443 465 442 465 0.94 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF526-201 - 670 2.3e-39 131.7 88.0 11 14 5.5e-06 0.0047 17.3 3.1 1 23 472 494 472 494 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF526-201 - 670 2.3e-39 131.7 88.0 12 14 6.8e-08 5.8e-05 23.3 1.7 1 23 500 522 500 522 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF526-201 - 670 2.3e-39 131.7 88.0 13 14 2.6e-09 2.3e-06 27.8 1.6 1 23 528 550 528 550 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF526-201 - 670 2.3e-39 131.7 88.0 14 14 0.00017 0.15 12.6 0.2 1 23 573 595 573 595 0.98 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZNF526-201 - 670 4.7e-31 104.8 88.6 1 13 0.0033 2.9 9.0 0.2 1 23 57 79 57 80 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF526-201 - 670 4.7e-31 104.8 88.6 2 13 0.014 12 7.0 0.0 1 23 108 130 108 131 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF526-201 - 670 4.7e-31 104.8 88.6 3 13 0.019 16 6.6 0.1 1 24 140 163 140 163 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF526-201 - 670 4.7e-31 104.8 88.6 4 13 0.0023 1.9 9.5 0.7 1 23 197 219 197 220 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF526-201 - 670 4.7e-31 104.8 88.6 5 13 6.6e-05 0.057 14.3 1.4 1 19 305 323 305 327 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF526-201 - 670 4.7e-31 104.8 88.6 6 13 0.00031 0.27 12.2 1.8 1 23 332 354 332 355 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF526-201 - 670 4.7e-31 104.8 88.6 7 13 0.0005 0.43 11.6 0.1 1 23 360 382 360 383 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF526-201 - 670 4.7e-31 104.8 88.6 8 13 0.0029 2.5 9.2 3.3 3 23 390 409 388 410 0.91 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF526-201 - 670 4.7e-31 104.8 88.6 9 13 1.6e-07 0.00014 22.4 0.5 2 24 443 465 442 465 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF526-201 - 670 4.7e-31 104.8 88.6 10 13 0.0002 0.17 12.8 2.1 1 23 472 494 472 495 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF526-201 - 670 4.7e-31 104.8 88.6 11 13 1.3e-06 0.0011 19.6 1.6 1 23 500 522 500 523 0.97 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF526-201 - 670 4.7e-31 104.8 88.6 12 13 1.3e-05 0.011 16.5 0.9 1 23 528 550 528 551 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF526-201 - 670 4.7e-31 104.8 88.6 13 13 0.00089 0.76 10.8 0.1 1 23 573 595 573 596 0.93 C2H2-type zinc finger zf-H2C2_2 PF13465.6 26 ZNF526-201 - 670 1.4e-24 85.3 83.9 1 14 2.4 2e+03 -0.5 0.3 15 24 57 66 52 68 0.75 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF526-201 - 670 1.4e-24 85.3 83.9 2 14 0.74 6.3e+02 1.1 0.1 12 21 105 114 104 115 0.86 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF526-201 - 670 1.4e-24 85.3 83.9 3 14 0.33 2.8e+02 2.2 0.0 5 21 130 146 123 149 0.67 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF526-201 - 670 1.4e-24 85.3 83.9 4 14 0.027 23 5.6 0.6 14 21 196 203 188 205 0.86 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF526-201 - 670 1.4e-24 85.3 83.9 5 14 0.0023 2 9.0 1.9 3 26 289 316 287 316 0.87 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF526-201 - 670 1.4e-24 85.3 83.9 6 14 0.0061 5.2 7.7 0.3 15 26 332 343 320 343 0.82 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF526-201 - 670 1.4e-24 85.3 83.9 7 14 3.8e-06 0.0032 17.8 0.0 1 26 346 371 346 371 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF526-201 - 670 1.4e-24 85.3 83.9 8 14 5.3 4.5e+03 -1.6 2.1 3 26 376 398 375 398 0.59 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF526-201 - 670 1.4e-24 85.3 83.9 9 14 0.0072 6.2 7.4 2.6 4 26 404 453 401 453 0.62 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF526-201 - 670 1.4e-24 85.3 83.9 10 14 1e-05 0.0087 16.5 1.4 2 26 457 483 456 483 0.88 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF526-201 - 670 1.4e-24 85.3 83.9 11 14 1.6e-10 1.3e-07 31.7 2.8 2 26 487 511 486 511 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF526-201 - 670 1.4e-24 85.3 83.9 12 14 2.1e-09 1.8e-06 28.1 0.2 1 25 514 538 514 539 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF526-201 - 670 1.4e-24 85.3 83.9 13 14 0.0055 4.7 7.8 0.2 1 24 542 582 542 583 0.88 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF526-201 - 670 1.4e-24 85.3 83.9 14 14 3 2.6e+03 -0.8 0.4 1 9 587 595 587 597 0.90 Zinc-finger double domain zf-C2H2_jaz PF12171.8 27 ZNF526-201 - 670 8.8e-20 70.5 33.3 1 12 2.1 1.8e+03 -0.6 0.1 1 9 56 64 56 76 0.73 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF526-201 - 670 8.8e-20 70.5 33.3 2 12 0.99 8.4e+02 0.4 0.1 6 22 144 160 139 160 0.84 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF526-201 - 670 8.8e-20 70.5 33.3 3 12 0.14 1.2e+02 3.1 0.0 2 21 197 216 196 218 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF526-201 - 670 8.8e-20 70.5 33.3 4 12 0.00044 0.38 11.1 0.5 2 20 305 323 304 323 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF526-201 - 670 8.8e-20 70.5 33.3 5 12 1.8e-06 0.0016 18.7 0.3 2 22 332 352 331 352 0.95 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF526-201 - 670 8.8e-20 70.5 33.3 6 12 0.0025 2.1 8.7 0.0 4 21 362 379 360 380 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF526-201 - 670 8.8e-20 70.5 33.3 7 12 0.026 22 5.5 0.2 7 24 392 409 392 410 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF526-201 - 670 8.8e-20 70.5 33.3 8 12 0.0027 2.3 8.6 0.0 2 21 442 461 441 462 0.88 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF526-201 - 670 8.8e-20 70.5 33.3 9 12 0.0016 1.4 9.3 0.1 2 24 472 494 471 494 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF526-201 - 670 8.8e-20 70.5 33.3 10 12 0.019 17 5.9 0.3 2 23 500 521 499 522 0.87 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF526-201 - 670 8.8e-20 70.5 33.3 11 12 0.032 27 5.2 0.1 4 21 530 547 527 548 0.90 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF526-201 - 670 8.8e-20 70.5 33.3 12 12 0.006 5.1 7.5 0.0 2 20 573 591 572 593 0.77 Zinc-finger double-stranded RNA-binding zf-C2H2_6 PF13912.6 27 ZNF526-201 - 670 4.1e-07 29.8 73.4 1 12 0.07 59 3.8 0.4 3 24 58 79 57 80 0.75 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF526-201 - 670 4.1e-07 29.8 73.4 2 12 0.56 4.8e+02 0.9 0.1 2 25 140 164 140 166 0.78 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF526-201 - 670 4.1e-07 29.8 73.4 3 12 0.35 3e+02 1.6 0.8 2 8 197 203 197 204 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF526-201 - 670 4.1e-07 29.8 73.4 4 12 0.0031 2.7 8.1 1.8 2 24 305 327 305 328 0.87 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF526-201 - 670 4.1e-07 29.8 73.4 5 12 2.6e-07 0.00023 21.1 2.0 2 26 332 356 331 357 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF526-201 - 670 4.1e-07 29.8 73.4 6 12 0.065 55 3.9 0.1 2 24 360 382 359 384 0.90 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF526-201 - 670 4.1e-07 29.8 73.4 7 12 2.7 2.3e+03 -1.3 0.7 7 12 392 397 388 410 0.75 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF526-201 - 670 4.1e-07 29.8 73.4 8 12 0.0004 0.35 10.9 0.1 4 25 444 465 443 467 0.85 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF526-201 - 670 4.1e-07 29.8 73.4 9 12 0.0019 1.6 8.8 1.8 1 24 471 494 471 497 0.90 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF526-201 - 670 4.1e-07 29.8 73.4 10 12 0.00018 0.15 12.1 2.2 2 21 500 519 500 523 0.87 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF526-201 - 670 4.1e-07 29.8 73.4 11 12 0.083 71 3.6 0.7 2 26 528 552 528 553 0.87 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF526-201 - 670 4.1e-07 29.8 73.4 12 12 6.1 5.2e+03 -2.4 0.1 4 12 575 583 573 595 0.72 C2H2-type zinc finger # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF526-201.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF526-201.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF526-201.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF526-201.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF526-201.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:08:05 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF526-202.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF526-202.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF526-202.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF526-202.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF526-202.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:08:06 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZNF527-201 - 548 2.4e-93 302.7 95.7 1 14 6.7 7.5e+03 -2.3 0.1 11 16 181 186 180 187 0.87 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF527-201 - 548 2.4e-93 302.7 95.7 2 14 0.046 52 4.5 0.8 3 25 201 223 200 224 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF527-201 - 548 2.4e-93 302.7 95.7 3 14 1.1e-07 0.00013 22.3 0.3 7 26 233 252 232 252 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF527-201 - 548 2.4e-93 302.7 95.7 4 14 5.2e-11 5.8e-08 32.8 0.8 2 25 256 279 256 280 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF527-201 - 548 2.4e-93 302.7 95.7 5 14 6.1e-11 6.9e-08 32.6 0.5 1 25 283 307 283 308 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF527-201 - 548 2.4e-93 302.7 95.7 6 14 6.5e-12 7.3e-09 35.7 0.6 2 25 312 335 312 336 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF527-201 - 548 2.4e-93 302.7 95.7 7 14 2e-12 2.2e-09 37.3 0.9 1 25 339 363 339 364 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF527-201 - 548 2.4e-93 302.7 95.7 8 14 5.4e-12 6.1e-09 35.9 0.5 1 25 367 391 367 392 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF527-201 - 548 2.4e-93 302.7 95.7 9 14 6.3e-12 7e-09 35.7 1.9 1 25 395 419 395 420 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF527-201 - 548 2.4e-93 302.7 95.7 10 14 6.1e-12 6.9e-09 35.7 0.9 2 25 424 447 423 448 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF527-201 - 548 2.4e-93 302.7 95.7 11 14 1.6e-08 1.8e-05 24.9 3.9 5 25 455 475 452 476 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF527-201 - 548 2.4e-93 302.7 95.7 12 14 1.9e-12 2.1e-09 37.4 1.0 2 24 480 502 479 504 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF527-201 - 548 2.4e-93 302.7 95.7 13 14 1.8e-08 2e-05 24.8 0.9 1 25 507 531 507 532 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF527-201 - 548 2.4e-93 302.7 95.7 14 14 0.013 15 6.2 0.4 1 13 535 547 535 548 0.89 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZNF527-201 - 548 7.4e-48 158.4 92.5 1 12 2.6 2.9e+03 -0.9 1.0 13 23 197 207 194 207 0.87 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF527-201 - 548 7.4e-48 158.4 92.5 2 12 1.5e-06 0.0017 18.7 1.7 1 23 241 263 241 263 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF527-201 - 548 7.4e-48 158.4 92.5 3 12 1.3e-08 1.5e-05 25.2 1.1 1 23 269 291 269 291 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF527-201 - 548 7.4e-48 158.4 92.5 4 12 3.2e-07 0.00036 20.8 0.2 1 23 297 319 297 319 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF527-201 - 548 7.4e-48 158.4 92.5 5 12 1.2e-08 1.3e-05 25.3 1.7 1 23 325 347 325 347 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF527-201 - 548 7.4e-48 158.4 92.5 6 12 3.4e-08 3.8e-05 23.9 0.2 1 23 353 375 353 375 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF527-201 - 548 7.4e-48 158.4 92.5 7 12 2.7e-08 3e-05 24.2 3.0 1 23 381 403 381 403 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF527-201 - 548 7.4e-48 158.4 92.5 8 12 1e-05 0.012 16.1 3.0 1 23 409 431 409 431 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF527-201 - 548 7.4e-48 158.4 92.5 9 12 1.1e-05 0.012 16.0 0.8 1 23 437 459 437 459 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF527-201 - 548 7.4e-48 158.4 92.5 10 12 1.4e-05 0.016 15.7 1.8 1 23 465 487 465 487 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF527-201 - 548 7.4e-48 158.4 92.5 11 12 7.1e-06 0.008 16.6 0.7 1 23 493 515 493 515 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF527-201 - 548 7.4e-48 158.4 92.5 12 12 3.3e-05 0.037 14.5 2.0 1 23 521 543 521 543 0.99 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZNF527-201 - 548 2.1e-27 93.4 91.7 1 12 4 4.5e+03 -1.0 0.4 5 14 217 226 216 230 0.74 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF527-201 - 548 2.1e-27 93.4 91.7 2 12 0.00052 0.59 11.1 0.9 1 23 241 263 241 264 0.84 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF527-201 - 548 2.1e-27 93.4 91.7 3 12 6.1e-05 0.069 14.0 1.1 1 23 269 291 269 292 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF527-201 - 548 2.1e-27 93.4 91.7 4 12 0.00014 0.16 12.9 0.3 1 23 297 319 297 320 0.84 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF527-201 - 548 2.1e-27 93.4 91.7 5 12 3.3e-05 0.037 14.9 1.4 1 23 325 347 325 348 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF527-201 - 548 2.1e-27 93.4 91.7 6 12 0.00021 0.23 12.4 0.2 1 23 353 375 353 376 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF527-201 - 548 2.1e-27 93.4 91.7 7 12 1.1e-05 0.012 16.4 2.1 1 23 381 403 381 404 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF527-201 - 548 2.1e-27 93.4 91.7 8 12 0.00014 0.15 12.9 1.8 1 23 409 431 409 432 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF527-201 - 548 2.1e-27 93.4 91.7 9 12 4.3e-05 0.048 14.5 0.7 1 23 437 459 437 460 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF527-201 - 548 2.1e-27 93.4 91.7 10 12 4.1e-05 0.046 14.6 1.6 1 23 465 487 465 488 0.91 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF527-201 - 548 2.1e-27 93.4 91.7 11 12 0.0002 0.22 12.5 0.5 1 23 493 515 493 516 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF527-201 - 548 2.1e-27 93.4 91.7 12 12 1.3e-06 0.0014 19.3 1.4 1 23 521 543 521 544 0.96 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF527-201 - 548 5.2e-15 55.0 79.3 1 12 0.21 2.3e+02 1.9 0.3 2 12 241 251 241 252 0.91 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF527-201 - 548 5.2e-15 55.0 79.3 2 12 0.00052 0.58 10.2 1.1 2 12 269 279 269 280 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF527-201 - 548 5.2e-15 55.0 79.3 3 12 3.1 3.5e+03 -1.8 0.1 20 26 283 289 282 290 0.83 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF527-201 - 548 5.2e-15 55.0 79.3 4 12 0.00031 0.35 10.9 0.3 2 21 297 316 297 321 0.82 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF527-201 - 548 5.2e-15 55.0 79.3 5 12 0.00026 0.3 11.2 0.8 2 12 325 335 325 347 0.83 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF527-201 - 548 5.2e-15 55.0 79.3 6 12 0.00026 0.29 11.2 0.1 2 20 353 371 353 377 0.81 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF527-201 - 548 5.2e-15 55.0 79.3 7 12 0.00012 0.13 12.2 2.1 2 21 381 400 381 405 0.81 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF527-201 - 548 5.2e-15 55.0 79.3 8 12 0.17 1.9e+02 2.2 0.8 2 13 409 420 409 432 0.79 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF527-201 - 548 5.2e-15 55.0 79.3 9 12 1.9e-05 0.021 14.8 0.9 2 24 437 459 437 462 0.96 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF527-201 - 548 5.2e-15 55.0 79.3 10 12 0.0063 7 6.8 2.4 2 20 465 483 465 489 0.80 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF527-201 - 548 5.2e-15 55.0 79.3 11 12 3.6e-05 0.04 13.9 0.6 2 22 493 513 493 517 0.88 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF527-201 - 548 5.2e-15 55.0 79.3 12 12 0.0011 1.2 9.2 1.2 2 24 521 543 521 546 0.89 C2H2-type zinc finger Zn-ribbon_8 PF09723.10 40 ZNF527-201 - 548 4.2e-12 46.0 57.2 1 10 0.0089 10 6.4 0.5 6 15 241 250 217 254 0.62 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF527-201 - 548 4.2e-12 46.0 57.2 2 10 0.00026 0.29 11.3 5.0 6 37 241 279 239 282 0.89 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF527-201 - 548 4.2e-12 46.0 57.2 3 10 0.00011 0.12 12.5 4.0 6 38 269 308 268 310 0.90 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF527-201 - 548 4.2e-12 46.0 57.2 4 10 9.8e-05 0.11 12.6 3.9 6 37 297 335 296 338 0.91 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF527-201 - 548 4.2e-12 46.0 57.2 5 10 7.6e-06 0.0085 16.2 3.7 6 40 325 366 324 366 0.93 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF527-201 - 548 4.2e-12 46.0 57.2 6 10 0.0003 0.34 11.1 2.1 6 34 381 416 380 423 0.92 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF527-201 - 548 4.2e-12 46.0 57.2 7 10 0.00017 0.19 11.9 2.5 6 34 437 472 436 475 0.80 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF527-201 - 548 4.2e-12 46.0 57.2 8 10 3.7e-05 0.042 14.0 5.3 6 37 465 503 463 506 0.91 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF527-201 - 548 4.2e-12 46.0 57.2 9 10 5.9e-05 0.066 13.3 4.2 6 35 493 529 492 531 0.89 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF527-201 - 548 4.2e-12 46.0 57.2 10 10 0.0038 4.3 7.6 0.8 6 16 521 531 520 546 0.77 Zinc ribbon domain zf-C2H2_11 PF16622.5 29 ZNF527-201 - 548 3e-08 33.3 56.2 1 11 0.027 31 4.5 0.1 7 24 243 260 240 262 0.90 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF527-201 - 548 3e-08 33.3 56.2 2 11 2.2 2.4e+03 -1.6 0.5 7 26 271 290 269 291 0.76 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF527-201 - 548 3e-08 33.3 56.2 3 11 0.11 1.2e+02 2.5 0.1 7 26 299 318 296 319 0.77 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF527-201 - 548 3e-08 33.3 56.2 4 11 0.29 3.3e+02 1.2 0.2 7 26 327 346 324 347 0.89 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF527-201 - 548 3e-08 33.3 56.2 5 11 0.0022 2.4 8.0 0.2 6 26 354 374 351 375 0.92 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF527-201 - 548 3e-08 33.3 56.2 6 11 0.004 4.5 7.1 0.5 5 26 381 402 378 403 0.92 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF527-201 - 548 3e-08 33.3 56.2 7 11 0.0012 1.3 8.9 0.5 6 26 410 430 407 431 0.93 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF527-201 - 548 3e-08 33.3 56.2 8 11 0.039 44 4.0 0.1 7 23 439 455 436 457 0.86 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF527-201 - 548 3e-08 33.3 56.2 9 11 0.0046 5.2 6.9 0.7 6 26 466 486 463 487 0.93 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF527-201 - 548 3e-08 33.3 56.2 10 11 0.0019 2.2 8.1 0.8 6 26 494 514 491 515 0.93 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF527-201 - 548 3e-08 33.3 56.2 11 11 2.1e-06 0.0023 17.6 0.4 5 26 521 542 518 543 0.94 zinc-finger C2H2-type zf_UBZ PF18439.1 32 ZNF527-201 - 548 2.1e-07 30.4 48.4 1 11 0.0023 2.6 7.7 0.1 3 21 241 260 239 260 0.91 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF527-201 - 548 2.1e-07 30.4 48.4 2 11 0.005 5.7 6.6 0.6 3 21 269 288 267 288 0.85 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF527-201 - 548 2.1e-07 30.4 48.4 3 11 0.021 23 4.7 0.0 3 15 297 309 295 316 0.75 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF527-201 - 548 2.1e-07 30.4 48.4 4 11 0.0057 6.4 6.5 0.7 3 21 325 344 323 344 0.85 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF527-201 - 548 2.1e-07 30.4 48.4 5 11 0.029 33 4.2 0.1 3 14 353 364 351 372 0.81 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF527-201 - 548 2.1e-07 30.4 48.4 6 11 0.0087 9.7 5.9 0.2 3 12 381 390 379 400 0.85 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF527-201 - 548 2.1e-07 30.4 48.4 7 11 0.064 72 3.1 0.2 3 20 409 427 407 428 0.81 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF527-201 - 548 2.1e-07 30.4 48.4 8 11 0.0038 4.3 7.0 0.1 3 16 437 450 435 455 0.82 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF527-201 - 548 2.1e-07 30.4 48.4 9 11 0.021 24 4.6 0.5 3 15 465 477 463 484 0.77 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF527-201 - 548 2.1e-07 30.4 48.4 10 11 0.0086 9.6 5.9 0.1 3 13 493 503 491 511 0.87 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF527-201 - 548 2.1e-07 30.4 48.4 11 11 0.04 44 3.8 0.4 3 15 521 533 519 540 0.78 Ubiquitin-Binding Zinc Finger XPA_N PF01286.18 32 ZNF527-201 - 548 7.8e-07 29.0 53.3 1 12 2.6 3e+03 -1.6 0.6 5 11 216 222 216 224 0.86 XPA protein N-terminal XPA_N PF01286.18 32 ZNF527-201 - 548 7.8e-07 29.0 53.3 2 12 0.044 50 4.1 0.2 4 13 243 252 240 259 0.78 XPA protein N-terminal XPA_N PF01286.18 32 ZNF527-201 - 548 7.8e-07 29.0 53.3 3 12 0.0018 2 8.5 0.1 3 14 270 281 268 285 0.90 XPA protein N-terminal XPA_N PF01286.18 32 ZNF527-201 - 548 7.8e-07 29.0 53.3 4 12 0.028 31 4.7 0.1 4 12 299 307 297 315 0.88 XPA protein N-terminal XPA_N PF01286.18 32 ZNF527-201 - 548 7.8e-07 29.0 53.3 5 12 0.0015 1.6 8.8 0.1 3 14 326 337 324 342 0.87 XPA protein N-terminal XPA_N PF01286.18 32 ZNF527-201 - 548 7.8e-07 29.0 53.3 6 12 0.07 78 3.4 0.1 3 12 354 363 352 364 0.88 XPA protein N-terminal XPA_N PF01286.18 32 ZNF527-201 - 548 7.8e-07 29.0 53.3 7 12 0.013 15 5.7 0.1 3 12 382 391 380 395 0.91 XPA protein N-terminal XPA_N PF01286.18 32 ZNF527-201 - 548 7.8e-07 29.0 53.3 8 12 0.046 52 4.0 0.1 3 16 410 424 408 429 0.78 XPA protein N-terminal XPA_N PF01286.18 32 ZNF527-201 - 548 7.8e-07 29.0 53.3 9 12 0.0063 7.1 6.8 0.1 3 14 438 449 436 454 0.89 XPA protein N-terminal XPA_N PF01286.18 32 ZNF527-201 - 548 7.8e-07 29.0 53.3 10 12 0.012 14 5.9 0.6 3 16 466 480 464 483 0.78 XPA protein N-terminal XPA_N PF01286.18 32 ZNF527-201 - 548 7.8e-07 29.0 53.3 11 12 0.009 10 6.3 0.3 3 12 494 503 492 504 0.89 XPA protein N-terminal XPA_N PF01286.18 32 ZNF527-201 - 548 7.8e-07 29.0 53.3 12 12 0.064 72 3.5 0.3 3 11 522 530 520 539 0.85 XPA protein N-terminal # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF527-201.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF527-201.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF527-201.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF527-201.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF527-201.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:08:06 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZNF527-202 - 609 1.3e-92 300.5 95.7 1 14 6.1 8.4e+03 -2.5 0.1 11 16 242 247 241 248 0.87 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF527-202 - 609 1.3e-92 300.5 95.7 2 14 0.043 59 4.3 0.8 3 25 262 284 261 285 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF527-202 - 609 1.3e-92 300.5 95.7 3 14 1e-07 0.00014 22.1 0.3 7 26 294 313 293 313 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF527-202 - 609 1.3e-92 300.5 95.7 4 14 4.8e-11 6.6e-08 32.6 0.8 2 25 317 340 317 341 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF527-202 - 609 1.3e-92 300.5 95.7 5 14 5.7e-11 7.8e-08 32.4 0.5 1 25 344 368 344 369 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF527-202 - 609 1.3e-92 300.5 95.7 6 14 6e-12 8.2e-09 35.5 0.6 2 25 373 396 373 397 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF527-202 - 609 1.3e-92 300.5 95.7 7 14 1.8e-12 2.5e-09 37.1 0.9 1 25 400 424 400 425 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF527-202 - 609 1.3e-92 300.5 95.7 8 14 5e-12 6.9e-09 35.7 0.5 1 25 428 452 428 453 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF527-202 - 609 1.3e-92 300.5 95.7 9 14 5.8e-12 8e-09 35.5 1.9 1 25 456 480 456 481 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF527-202 - 609 1.3e-92 300.5 95.7 10 14 5.7e-12 7.8e-09 35.6 0.9 2 25 485 508 484 509 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF527-202 - 609 1.3e-92 300.5 95.7 11 14 1.5e-08 2.1e-05 24.7 3.9 5 25 516 536 513 537 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF527-202 - 609 1.3e-92 300.5 95.7 12 14 1.7e-12 2.4e-09 37.2 1.0 2 24 541 563 540 565 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF527-202 - 609 1.3e-92 300.5 95.7 13 14 1.7e-08 2.3e-05 24.6 0.9 1 25 568 592 568 593 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF527-202 - 609 1.3e-92 300.5 95.7 14 14 0.012 17 6.1 0.4 1 13 596 608 596 609 0.89 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZNF527-202 - 609 3.2e-47 156.4 92.5 1 12 2.3 3.2e+03 -1.1 1.0 13 23 258 268 255 268 0.87 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF527-202 - 609 3.2e-47 156.4 92.5 2 12 1.4e-06 0.002 18.5 1.7 1 23 302 324 302 324 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF527-202 - 609 3.2e-47 156.4 92.5 3 12 1.2e-08 1.7e-05 25.0 1.1 1 23 330 352 330 352 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF527-202 - 609 3.2e-47 156.4 92.5 4 12 2.9e-07 0.00041 20.7 0.2 1 23 358 380 358 380 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF527-202 - 609 3.2e-47 156.4 92.5 5 12 1.1e-08 1.5e-05 25.2 1.7 1 23 386 408 386 408 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF527-202 - 609 3.2e-47 156.4 92.5 6 12 3.1e-08 4.3e-05 23.7 0.2 1 23 414 436 414 436 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF527-202 - 609 3.2e-47 156.4 92.5 7 12 2.5e-08 3.4e-05 24.0 3.0 1 23 442 464 442 464 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF527-202 - 609 3.2e-47 156.4 92.5 8 12 9.5e-06 0.013 15.9 3.0 1 23 470 492 470 492 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF527-202 - 609 3.2e-47 156.4 92.5 9 12 1e-05 0.014 15.8 0.8 1 23 498 520 498 520 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF527-202 - 609 3.2e-47 156.4 92.5 10 12 1.3e-05 0.018 15.5 1.8 1 23 526 548 526 548 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF527-202 - 609 3.2e-47 156.4 92.5 11 12 6.6e-06 0.0091 16.4 0.7 1 23 554 576 554 576 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF527-202 - 609 3.2e-47 156.4 92.5 12 12 3.1e-05 0.042 14.3 2.0 1 23 582 604 582 604 0.99 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZNF527-202 - 609 1.1e-26 91.1 92.0 1 12 4.4 6.1e+03 -1.4 0.5 5 14 278 287 277 290 0.74 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF527-202 - 609 1.1e-26 91.1 92.0 2 12 0.00048 0.66 11.0 0.9 1 23 302 324 302 325 0.84 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF527-202 - 609 1.1e-26 91.1 92.0 3 12 5.7e-05 0.078 13.9 1.1 1 23 330 352 330 353 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF527-202 - 609 1.1e-26 91.1 92.0 4 12 0.00013 0.18 12.7 0.3 1 23 358 380 358 381 0.84 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF527-202 - 609 1.1e-26 91.1 92.0 5 12 3.1e-05 0.042 14.7 1.4 1 23 386 408 386 409 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF527-202 - 609 1.1e-26 91.1 92.0 6 12 0.00019 0.26 12.2 0.2 1 23 414 436 414 437 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF527-202 - 609 1.1e-26 91.1 92.0 7 12 1e-05 0.014 16.2 2.1 1 23 442 464 442 465 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF527-202 - 609 1.1e-26 91.1 92.0 8 12 0.00013 0.18 12.8 1.8 1 23 470 492 470 493 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF527-202 - 609 1.1e-26 91.1 92.0 9 12 4e-05 0.055 14.3 0.7 1 23 498 520 498 521 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF527-202 - 609 1.1e-26 91.1 92.0 10 12 3.8e-05 0.052 14.4 1.6 1 23 526 548 526 549 0.91 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF527-202 - 609 1.1e-26 91.1 92.0 11 12 0.00018 0.25 12.3 0.5 1 23 554 576 554 577 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF527-202 - 609 1.1e-26 91.1 92.0 12 12 1.2e-06 0.0016 19.1 1.4 1 23 582 604 582 605 0.96 C2H2-type zinc finger KRAB PF01352.27 42 ZNF527-202 - 609 4.1e-25 87.2 1.1 1 1 5.9e-28 8.2e-25 86.2 1.1 1 42 13 54 13 54 0.98 KRAB box zf-C2H2_6 PF13912.6 27 ZNF527-202 - 609 2e-14 53.1 79.3 1 12 0.19 2.6e+02 1.8 0.3 2 12 302 312 302 313 0.90 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF527-202 - 609 2e-14 53.1 79.3 2 12 0.00047 0.65 10.1 1.1 2 12 330 340 330 341 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF527-202 - 609 2e-14 53.1 79.3 3 12 2.9 3.9e+03 -2.0 0.1 20 26 344 350 343 351 0.83 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF527-202 - 609 2e-14 53.1 79.3 4 12 0.00029 0.4 10.8 0.3 2 21 358 377 358 382 0.82 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF527-202 - 609 2e-14 53.1 79.3 5 12 0.00024 0.33 11.0 0.8 2 12 386 396 386 408 0.83 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF527-202 - 609 2e-14 53.1 79.3 6 12 0.00024 0.33 11.0 0.1 2 20 414 432 414 438 0.81 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF527-202 - 609 2e-14 53.1 79.3 7 12 0.00011 0.15 12.1 2.1 2 21 442 461 442 466 0.81 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF527-202 - 609 2e-14 53.1 79.3 8 12 0.15 2.1e+02 2.0 0.8 2 13 470 481 470 493 0.79 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF527-202 - 609 2e-14 53.1 79.3 9 12 1.7e-05 0.024 14.7 0.9 2 24 498 520 498 523 0.96 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF527-202 - 609 2e-14 53.1 79.3 10 12 0.0057 7.9 6.6 2.4 2 20 526 544 526 550 0.80 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF527-202 - 609 2e-14 53.1 79.3 11 12 3.3e-05 0.045 13.8 0.6 2 22 554 574 554 578 0.88 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF527-202 - 609 2e-14 53.1 79.3 12 12 0.001 1.4 9.0 1.2 2 24 582 604 582 607 0.89 C2H2-type zinc finger Zn-ribbon_8 PF09723.10 40 ZNF527-202 - 609 1.4e-11 44.3 57.6 1 10 0.0078 11 6.3 0.5 6 15 302 311 278 315 0.63 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF527-202 - 609 1.4e-11 44.3 57.6 2 10 0.00026 0.36 11.0 5.0 6 37 302 340 300 342 0.89 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF527-202 - 609 1.4e-11 44.3 57.6 3 10 0.0001 0.14 12.3 4.0 6 38 330 369 329 371 0.90 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF527-202 - 609 1.4e-11 44.3 57.6 4 10 0.00012 0.17 12.0 4.4 6 37 358 396 356 398 0.91 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF527-202 - 609 1.4e-11 44.3 57.6 5 10 9.4e-06 0.013 15.6 4.1 6 40 386 427 385 427 0.93 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF527-202 - 609 1.4e-11 44.3 57.6 6 10 0.00028 0.38 10.9 2.1 6 34 442 477 441 484 0.92 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF527-202 - 609 1.4e-11 44.3 57.6 7 10 0.00017 0.23 11.6 2.6 6 34 498 533 497 536 0.80 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF527-202 - 609 1.4e-11 44.3 57.6 8 10 3.4e-05 0.047 13.8 5.3 6 37 526 564 524 567 0.91 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF527-202 - 609 1.4e-11 44.3 57.6 9 10 5.3e-05 0.073 13.2 4.2 6 35 554 590 553 592 0.89 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF527-202 - 609 1.4e-11 44.3 57.6 10 10 0.0035 4.8 7.4 0.8 6 16 582 592 581 607 0.77 Zinc ribbon domain zf-C2H2_11 PF16622.5 29 ZNF527-202 - 609 1e-07 31.5 56.2 1 11 0.025 35 4.3 0.1 7 24 304 321 301 323 0.90 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF527-202 - 609 1e-07 31.5 56.2 2 11 2 2.7e+03 -1.8 0.5 7 26 332 351 330 352 0.76 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF527-202 - 609 1e-07 31.5 56.2 3 11 0.1 1.4e+02 2.4 0.1 7 26 360 379 357 380 0.77 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF527-202 - 609 1e-07 31.5 56.2 4 11 0.27 3.7e+02 1.0 0.2 7 26 388 407 385 408 0.89 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF527-202 - 609 1e-07 31.5 56.2 5 11 0.002 2.7 7.8 0.2 6 26 415 435 412 436 0.92 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF527-202 - 609 1e-07 31.5 56.2 6 11 0.0037 5 7.0 0.5 5 26 442 463 439 464 0.92 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF527-202 - 609 1e-07 31.5 56.2 7 11 0.0011 1.5 8.7 0.5 6 26 471 491 468 492 0.93 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF527-202 - 609 1e-07 31.5 56.2 8 11 0.036 49 3.8 0.1 7 23 500 516 497 518 0.86 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF527-202 - 609 1e-07 31.5 56.2 9 11 0.0042 5.8 6.8 0.7 6 26 527 547 524 548 0.93 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF527-202 - 609 1e-07 31.5 56.2 10 11 0.0018 2.5 8.0 0.8 6 26 555 575 552 576 0.93 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF527-202 - 609 1e-07 31.5 56.2 11 11 1.9e-06 0.0026 17.5 0.4 5 26 582 603 579 604 0.94 zinc-finger C2H2-type zf_UBZ PF18439.1 32 ZNF527-202 - 609 7.3e-07 28.7 48.4 1 11 0.0021 2.9 7.5 0.1 3 21 302 321 300 321 0.91 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF527-202 - 609 7.3e-07 28.7 48.4 2 11 0.0046 6.4 6.5 0.6 3 21 330 349 328 349 0.85 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF527-202 - 609 7.3e-07 28.7 48.4 3 11 0.019 26 4.5 0.0 3 15 358 370 356 377 0.75 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF527-202 - 609 7.3e-07 28.7 48.4 4 11 0.0052 7.2 6.3 0.7 3 21 386 405 384 405 0.85 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF527-202 - 609 7.3e-07 28.7 48.4 5 11 0.027 37 4.0 0.1 3 14 414 425 412 433 0.81 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF527-202 - 609 7.3e-07 28.7 48.4 6 11 0.0079 11 5.7 0.2 3 12 442 451 440 461 0.85 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF527-202 - 609 7.3e-07 28.7 48.4 7 11 0.059 81 2.9 0.2 3 20 470 488 468 489 0.81 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF527-202 - 609 7.3e-07 28.7 48.4 8 11 0.0035 4.8 6.9 0.1 3 16 498 511 496 516 0.82 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF527-202 - 609 7.3e-07 28.7 48.4 9 11 0.019 27 4.5 0.5 3 15 526 538 524 545 0.77 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF527-202 - 609 7.3e-07 28.7 48.4 10 11 0.0078 11 5.7 0.1 3 13 554 564 552 572 0.87 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF527-202 - 609 7.3e-07 28.7 48.4 11 11 0.036 50 3.6 0.4 3 15 582 594 580 601 0.78 Ubiquitin-Binding Zinc Finger # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF527-202.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF527-202.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF527-202.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF527-202.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF527-202.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:08:07 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- KRAB PF01352.27 42 ZNF527-203 - 124 4.8e-26 90.1 1.1 1 1 3.8e-30 6.9e-26 89.6 1.1 1 42 13 54 13 54 0.98 KRAB box # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF527-203.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF527-203.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF527-203.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF527-203.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF527-203.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:08:07 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- KRAB PF01352.27 42 ZNF527-204 - 146 6.5e-26 89.7 1.1 1 1 5.3e-30 9.5e-26 89.2 1.1 1 42 13 54 13 54 0.98 KRAB box # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF527-204.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF527-204.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF527-204.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF527-204.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF527-204.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:08:07 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- KRAB PF01352.27 42 ZNF527-205 - 58 9e-25 86.1 1.1 1 1 6.4e-29 1.2e-24 85.7 1.1 1 40 13 52 13 52 0.97 KRAB box # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF527-205.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF527-205.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF527-205.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF527-205.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF527-205.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:08:08 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF527-206.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF527-206.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF527-206.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF527-206.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF527-206.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:08:08 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- KRAB PF01352.27 42 ZNF527-207 - 88 2.5e-26 91.0 1.1 1 1 1.8e-30 3.2e-26 90.7 1.1 1 42 13 54 13 54 0.98 KRAB box # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF527-207.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF527-207.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF527-207.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF527-207.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF527-207.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:08:08 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZNF528-201 - 628 2.3e-105 340.8 121.0 1 17 2.3 2.2e+03 -0.6 0.1 9 17 180 188 177 190 0.82 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF528-201 - 628 2.3e-105 340.8 121.0 2 17 2.1e-05 0.02 15.3 0.7 9 25 207 223 204 224 0.90 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF528-201 - 628 2.3e-105 340.8 121.0 3 17 1.7e-09 1.6e-06 28.2 2.0 2 25 228 251 227 252 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF528-201 - 628 2.3e-105 340.8 121.0 4 17 7.1e-12 6.7e-09 35.8 1.5 1 25 255 279 255 280 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF528-201 - 628 2.3e-105 340.8 121.0 5 17 4.7e-11 4.4e-08 33.2 1.5 2 25 284 307 283 308 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF528-201 - 628 2.3e-105 340.8 121.0 6 17 3e-11 2.9e-08 33.8 1.9 1 25 311 335 311 336 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF528-201 - 628 2.3e-105 340.8 121.0 7 17 3e-10 2.8e-07 30.7 0.6 2 25 340 363 339 363 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF528-201 - 628 2.3e-105 340.8 121.0 8 17 5.3e-09 5e-06 26.7 0.4 2 25 368 391 367 392 0.90 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF528-201 - 628 2.3e-105 340.8 121.0 9 17 4e-07 0.00038 20.8 0.2 2 25 396 419 396 420 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF528-201 - 628 2.3e-105 340.8 121.0 10 17 2e-08 1.9e-05 24.8 1.3 1 24 423 446 423 447 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF528-201 - 628 2.3e-105 340.8 121.0 11 17 8.6e-10 8.1e-07 29.2 0.5 1 25 451 475 451 476 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF528-201 - 628 2.3e-105 340.8 121.0 12 17 2.8e-09 2.7e-06 27.6 2.2 1 25 479 503 479 504 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF528-201 - 628 2.3e-105 340.8 121.0 13 17 8.9e-10 8.4e-07 29.1 1.6 2 25 508 531 507 532 0.90 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF528-201 - 628 2.3e-105 340.8 121.0 14 17 5.3e-11 5e-08 33.0 0.6 2 24 536 558 535 559 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF528-201 - 628 2.3e-105 340.8 121.0 15 17 9.3e-08 8.8e-05 22.8 0.5 1 25 563 587 563 588 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF528-201 - 628 2.3e-105 340.8 121.0 16 17 2.7e-09 2.6e-06 27.6 2.9 1 26 591 616 591 616 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF528-201 - 628 2.3e-105 340.8 121.0 17 17 2.6 2.4e+03 -0.8 0.1 2 9 620 627 619 628 0.85 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZNF528-201 - 628 2.1e-80 261.0 134.9 1 16 6.6 6.3e+03 -2.0 0.0 1 17 186 202 186 203 0.66 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF528-201 - 628 2.1e-80 261.0 134.9 2 16 3e-06 0.0028 18.0 3.0 1 23 213 235 213 235 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF528-201 - 628 2.1e-80 261.0 134.9 3 16 1.1e-08 9.9e-06 25.7 2.6 1 23 241 263 241 263 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF528-201 - 628 2.1e-80 261.0 134.9 4 16 5.2e-09 4.9e-06 26.7 2.6 1 23 269 291 269 291 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF528-201 - 628 2.1e-80 261.0 134.9 5 16 2.4e-08 2.2e-05 24.6 2.7 1 23 297 319 297 319 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF528-201 - 628 2.1e-80 261.0 134.9 6 16 1.6e-07 0.00015 22.0 2.1 1 23 325 347 325 347 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF528-201 - 628 2.1e-80 261.0 134.9 7 16 7.2e-08 6.8e-05 23.1 0.2 1 23 353 375 353 375 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF528-201 - 628 2.1e-80 261.0 134.9 8 16 6.8e-07 0.00064 20.0 4.0 1 23 381 403 381 403 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF528-201 - 628 2.1e-80 261.0 134.9 9 16 7.2e-08 6.8e-05 23.1 0.9 3 23 411 431 409 431 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF528-201 - 628 2.1e-80 261.0 134.9 10 16 4.8e-06 0.0045 17.4 0.5 1 23 437 459 437 459 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF528-201 - 628 2.1e-80 261.0 134.9 11 16 1.4e-08 1.3e-05 25.4 3.2 1 23 465 487 465 487 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF528-201 - 628 2.1e-80 261.0 134.9 12 16 3.1e-07 0.00029 21.1 3.3 1 23 493 515 493 515 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF528-201 - 628 2.1e-80 261.0 134.9 13 16 5.4e-09 5e-06 26.7 0.5 1 23 521 543 521 543 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF528-201 - 628 2.1e-80 261.0 134.9 14 16 5.5e-07 0.00052 20.3 0.6 1 23 549 571 549 571 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF528-201 - 628 2.1e-80 261.0 134.9 15 16 1.1e-07 9.9e-05 22.6 3.9 1 23 577 599 577 599 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF528-201 - 628 2.1e-80 261.0 134.9 16 16 2.2e-08 2.1e-05 24.7 2.3 1 23 605 627 605 627 0.99 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZNF528-201 - 628 5.8e-46 151.2 127.0 1 16 3.2 3e+03 -0.4 0.0 1 16 186 201 186 203 0.80 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF528-201 - 628 5.8e-46 151.2 127.0 2 16 4.4e-06 0.0041 17.8 2.9 1 23 213 235 213 236 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF528-201 - 628 5.8e-46 151.2 127.0 3 16 4.4e-06 0.0041 17.8 2.0 1 23 241 263 241 264 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF528-201 - 628 5.8e-46 151.2 127.0 4 16 1.1e-05 0.01 16.6 2.3 1 23 269 291 269 292 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF528-201 - 628 5.8e-46 151.2 127.0 5 16 4.9e-05 0.046 14.6 2.2 1 23 297 319 297 320 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF528-201 - 628 5.8e-46 151.2 127.0 6 16 0.00064 0.61 11.1 1.8 1 23 325 347 325 348 0.86 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF528-201 - 628 5.8e-46 151.2 127.0 7 16 2.7e-05 0.025 15.4 0.3 1 23 353 375 353 376 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF528-201 - 628 5.8e-46 151.2 127.0 8 16 0.00045 0.43 11.6 3.3 1 23 381 403 381 404 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF528-201 - 628 5.8e-46 151.2 127.0 9 16 6.9e-07 0.00065 20.3 0.6 2 23 410 431 409 432 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF528-201 - 628 5.8e-46 151.2 127.0 10 16 0.00019 0.18 12.7 0.5 1 23 437 459 437 460 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF528-201 - 628 5.8e-46 151.2 127.0 11 16 3.1e-05 0.029 15.2 2.5 1 23 465 487 465 488 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF528-201 - 628 5.8e-46 151.2 127.0 12 16 7.5e-05 0.071 14.0 2.9 1 23 493 515 493 516 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF528-201 - 628 5.8e-46 151.2 127.0 13 16 1.6e-05 0.015 16.1 0.4 1 23 521 543 521 544 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF528-201 - 628 5.8e-46 151.2 127.0 14 16 2.7e-05 0.025 15.4 0.7 1 23 549 571 549 572 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF528-201 - 628 5.8e-46 151.2 127.0 15 16 6.6e-05 0.062 14.2 2.1 1 23 577 599 577 600 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF528-201 - 628 5.8e-46 151.2 127.0 16 16 1.6e-05 0.015 16.1 2.2 1 23 605 627 605 628 0.93 C2H2-type zinc finger KRAB PF01352.27 42 ZNF528-201 - 628 6.9e-26 89.6 0.0 1 1 1.3e-28 1.2e-25 88.8 0.0 1 42 7 48 7 48 0.97 KRAB box zf-C2H2_6 PF13912.6 27 ZNF528-201 - 628 1.1e-20 73.1 117.8 1 15 0.0034 3.2 7.9 4.2 2 12 213 223 213 224 0.95 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF528-201 - 628 1.1e-20 73.1 117.8 2 15 0.00017 0.16 12.0 2.3 2 22 241 261 241 265 0.86 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF528-201 - 628 1.1e-20 73.1 117.8 3 15 0.00012 0.11 12.5 1.1 2 13 269 280 269 291 0.86 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF528-201 - 628 1.1e-20 73.1 117.8 4 15 0.00043 0.41 10.7 0.9 2 13 297 308 297 320 0.83 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF528-201 - 628 1.1e-20 73.1 117.8 5 15 0.011 10 6.3 0.7 2 12 325 335 325 344 0.89 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF528-201 - 628 1.1e-20 73.1 117.8 6 15 0.0019 1.8 8.7 0.1 2 20 353 371 353 374 0.87 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF528-201 - 628 1.1e-20 73.1 117.8 7 15 0.00078 0.73 9.9 1.8 2 12 381 391 381 402 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF528-201 - 628 1.1e-20 73.1 117.8 8 15 9.4e-05 0.088 12.8 0.6 2 26 409 433 409 434 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF528-201 - 628 1.1e-20 73.1 117.8 9 15 0.027 26 5.0 0.4 2 20 437 455 437 455 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF528-201 - 628 1.1e-20 73.1 117.8 10 15 6.7e-06 0.0063 16.5 2.5 2 24 465 487 465 490 0.90 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF528-201 - 628 1.1e-20 73.1 117.8 11 15 0.011 11 6.2 2.4 2 17 493 508 493 516 0.79 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF528-201 - 628 1.1e-20 73.1 117.8 12 15 0.00064 0.6 10.2 0.5 2 12 521 531 521 533 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF528-201 - 628 1.1e-20 73.1 117.8 13 15 0.0019 1.8 8.7 1.8 2 24 549 571 549 574 0.87 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF528-201 - 628 1.1e-20 73.1 117.8 14 15 0.0026 2.5 8.2 2.0 2 18 577 593 576 599 0.76 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF528-201 - 628 1.1e-20 73.1 117.8 15 15 0.0011 1 9.4 0.6 2 12 605 615 605 627 0.89 C2H2-type zinc finger Zn-ribbon_8 PF09723.10 40 ZNF528-201 - 628 1.5e-19 69.8 81.0 1 15 0.072 68 3.7 0.0 6 19 186 199 185 209 0.83 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF528-201 - 628 1.5e-19 69.8 81.0 2 15 1.8e-05 0.017 15.2 3.9 6 34 213 248 212 252 0.88 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF528-201 - 628 1.5e-19 69.8 81.0 3 15 0.0011 1.1 9.5 5.4 6 33 241 275 240 279 0.91 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF528-201 - 628 1.5e-19 69.8 81.0 4 15 0.0077 7.3 6.8 0.6 6 19 269 282 267 293 0.80 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF528-201 - 628 1.5e-19 69.8 81.0 5 15 4e-06 0.0038 17.3 1.9 6 34 297 332 296 337 0.91 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF528-201 - 628 1.5e-19 69.8 81.0 6 15 3.1e-05 0.03 14.5 3.4 6 34 325 360 324 366 0.90 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF528-201 - 628 1.5e-19 69.8 81.0 7 15 0.0006 0.56 10.4 0.3 6 20 353 367 352 375 0.85 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF528-201 - 628 1.5e-19 69.8 81.0 8 15 0.0011 0.99 9.6 4.9 6 34 381 416 380 422 0.91 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF528-201 - 628 1.5e-19 69.8 81.0 9 15 0.00011 0.11 12.7 3.0 6 37 409 447 407 450 0.82 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF528-201 - 628 1.5e-19 69.8 81.0 10 15 0.0032 3 8.0 0.3 6 19 437 450 436 455 0.87 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF528-201 - 628 1.5e-19 69.8 81.0 11 15 0.00022 0.21 11.8 4.7 6 34 465 500 464 504 0.88 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF528-201 - 628 1.5e-19 69.8 81.0 12 15 0.00014 0.13 12.4 4.4 6 34 493 528 492 528 0.91 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF528-201 - 628 1.5e-19 69.8 81.0 13 15 2.2e-05 0.021 14.9 2.7 6 35 521 557 519 559 0.86 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF528-201 - 628 1.5e-19 69.8 81.0 14 15 0.0001 0.095 12.8 3.8 6 34 549 584 548 591 0.79 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF528-201 - 628 1.5e-19 69.8 81.0 15 15 0.07 66 3.7 0.1 6 17 605 616 604 625 0.84 Zinc ribbon domain zf_UBZ PF18439.1 32 ZNF528-201 - 628 1.3e-10 40.7 74.2 1 15 0.0011 0.99 9.1 0.5 3 16 213 226 211 229 0.85 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF528-201 - 628 1.3e-10 40.7 74.2 2 15 0.003 2.8 7.6 0.3 3 21 241 260 239 260 0.89 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF528-201 - 628 1.3e-10 40.7 74.2 3 15 0.0049 4.6 6.9 0.6 3 21 269 288 267 288 0.91 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF528-201 - 628 1.3e-10 40.7 74.2 4 15 0.092 87 2.8 0.2 3 13 297 307 295 312 0.86 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF528-201 - 628 1.3e-10 40.7 74.2 5 15 0.00056 0.52 9.9 0.2 3 21 325 344 323 344 0.92 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF528-201 - 628 1.3e-10 40.7 74.2 6 15 0.00087 0.82 9.3 0.1 3 20 353 371 351 372 0.84 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF528-201 - 628 1.3e-10 40.7 74.2 7 15 0.084 79 3.0 0.9 3 12 381 390 379 400 0.86 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF528-201 - 628 1.3e-10 40.7 74.2 8 15 0.025 24 4.6 0.1 3 15 409 421 408 428 0.78 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF528-201 - 628 1.3e-10 40.7 74.2 9 15 0.046 44 3.8 0.1 3 20 437 455 435 455 0.83 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF528-201 - 628 1.3e-10 40.7 74.2 10 15 0.017 16 5.2 0.3 3 13 465 475 463 484 0.74 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF528-201 - 628 1.3e-10 40.7 74.2 11 15 0.0021 2 8.1 0.3 3 20 493 511 491 512 0.84 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF528-201 - 628 1.3e-10 40.7 74.2 12 15 0.018 17 5.1 0.1 3 15 521 533 519 540 0.82 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF528-201 - 628 1.3e-10 40.7 74.2 13 15 0.033 31 4.3 0.3 3 12 549 558 547 559 0.87 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF528-201 - 628 1.3e-10 40.7 74.2 14 15 0.064 61 3.3 0.6 2 14 576 588 575 596 0.75 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF528-201 - 628 1.3e-10 40.7 74.2 15 15 0.017 16 5.2 0.2 3 21 605 624 603 624 0.94 Ubiquitin-Binding Zinc Finger C1_1 PF00130.22 53 ZNF528-201 - 628 7.3e-08 32.2 71.2 1 12 0.00031 0.29 11.1 1.8 5 37 206 249 204 253 0.88 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF528-201 - 628 7.3e-08 32.2 71.2 2 12 0.0014 1.4 8.9 0.9 6 37 236 277 231 282 0.81 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF528-201 - 628 7.3e-08 32.2 71.2 3 12 0.007 6.6 6.7 2.1 5 37 263 305 258 308 0.80 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF528-201 - 628 7.3e-08 32.2 71.2 4 12 0.04 38 4.3 3.2 5 37 291 333 287 334 0.75 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF528-201 - 628 7.3e-08 32.2 71.2 5 12 0.014 13 5.7 1.8 7 34 320 358 311 358 0.79 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF528-201 - 628 7.3e-08 32.2 71.2 6 12 2.4e-05 0.022 14.6 2.2 1 43 343 395 343 402 0.89 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF528-201 - 628 7.3e-08 32.2 71.2 7 12 0.0083 7.8 6.5 2.1 4 36 402 444 399 446 0.80 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF528-201 - 628 7.3e-08 32.2 71.2 8 12 0.026 24 4.9 2.0 5 36 431 472 425 474 0.76 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF528-201 - 628 7.3e-08 32.2 71.2 9 12 0.097 91 3.0 10.2 10 50 463 518 455 533 0.57 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF528-201 - 628 7.3e-08 32.2 71.2 10 12 0.0039 3.7 7.5 3.5 6 36 516 556 511 558 0.81 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF528-201 - 628 7.3e-08 32.2 71.2 11 12 0.0067 6.4 6.8 0.4 1 25 539 563 539 571 0.83 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF528-201 - 628 7.3e-08 32.2 71.2 12 12 0.0093 8.8 6.3 4.2 5 38 571 614 567 618 0.81 Phorbol esters/diacylglycerol binding domain (C1 domain) zf-C2H2_jaz PF12171.8 27 ZNF528-201 - 628 1.3e-07 31.7 83.0 1 14 7.1 6.7e+03 -2.4 0.0 17 24 177 184 175 185 0.79 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF528-201 - 628 1.3e-07 31.7 83.0 2 14 0.16 1.5e+02 2.8 0.4 2 12 213 223 212 233 0.77 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF528-201 - 628 1.3e-07 31.7 83.0 3 14 0.00044 0.41 11.0 0.5 2 22 241 261 240 261 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF528-201 - 628 1.3e-07 31.7 83.0 4 14 3.4e-05 0.032 14.5 0.7 2 22 269 289 268 289 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF528-201 - 628 1.3e-07 31.7 83.0 5 14 0.0026 2.4 8.5 1.8 2 22 297 317 296 317 0.90 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF528-201 - 628 1.3e-07 31.7 83.0 6 14 0.32 3e+02 1.9 0.3 3 21 326 344 324 345 0.85 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF528-201 - 628 1.3e-07 31.7 83.0 7 14 0.026 24 5.4 0.0 2 20 353 371 352 373 0.85 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF528-201 - 628 1.3e-07 31.7 83.0 8 14 0.0089 8.4 6.8 1.5 2 13 381 392 380 401 0.80 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF528-201 - 628 1.3e-07 31.7 83.0 9 14 0.055 52 4.3 0.5 4 24 411 431 409 431 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF528-201 - 628 1.3e-07 31.7 83.0 10 14 0.026 24 5.4 0.2 2 20 465 483 464 483 0.79 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF528-201 - 628 1.3e-07 31.7 83.0 11 14 0.8 7.6e+02 0.6 0.8 2 21 493 512 492 513 0.82 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF528-201 - 628 1.3e-07 31.7 83.0 12 14 0.12 1.1e+02 3.3 0.4 2 20 521 539 520 540 0.89 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF528-201 - 628 1.3e-07 31.7 83.0 13 14 0.0075 7 7.1 1.3 2 20 577 595 576 596 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF528-201 - 628 1.3e-07 31.7 83.0 14 14 5e-05 0.047 14.0 0.5 2 22 605 625 604 625 0.93 Zinc-finger double-stranded RNA-binding zinc_ribbon_15 PF17032.5 86 ZNF528-201 - 628 2.2e-07 31.5 67.2 1 11 0.14 1.3e+02 3.4 0.9 35 78 183 225 177 231 0.74 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF528-201 - 628 2.2e-07 31.5 67.2 2 11 0.002 1.9 9.3 3.2 35 79 210 254 204 259 0.86 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF528-201 - 628 2.2e-07 31.5 67.2 3 11 0.00024 0.22 12.3 2.1 32 78 235 281 227 287 0.85 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF528-201 - 628 2.2e-07 31.5 67.2 4 11 0.0014 1.4 9.8 2.9 32 76 263 307 258 312 0.86 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF528-201 - 628 2.2e-07 31.5 67.2 5 11 0.0037 3.5 8.4 2.3 31 76 290 335 285 342 0.86 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF528-201 - 628 2.2e-07 31.5 67.2 6 11 0.0007 0.66 10.8 1.6 30 76 317 363 310 371 0.85 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF528-201 - 628 2.2e-07 31.5 67.2 7 11 0.03 28 5.5 2.9 33 74 348 389 341 394 0.84 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF528-201 - 628 2.2e-07 31.5 67.2 8 11 0.0001 0.095 13.5 2.2 29 75 400 446 390 451 0.85 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF528-201 - 628 2.2e-07 31.5 67.2 9 11 0.0014 1.3 9.8 2.6 33 79 460 506 453 512 0.84 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF528-201 - 628 2.2e-07 31.5 67.2 10 11 0.0062 5.9 7.7 2.5 30 74 513 557 507 562 0.83 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF528-201 - 628 2.2e-07 31.5 67.2 11 11 0.0041 3.9 8.3 1.6 31 79 570 618 566 622 0.86 zinc-ribbon family MRP-S23 PF10484.9 128 ZNF528-201 - 628 9.7e-07 29.1 0.0 1 8 4.3 4.1e+03 -2.0 0.0 7 31 217 241 214 245 0.89 Mitochondrial ribosomal protein S23 MRP-S23 PF10484.9 128 ZNF528-201 - 628 9.7e-07 29.1 0.0 2 8 4.6 4.3e+03 -2.1 0.0 6 31 244 269 241 272 0.87 Mitochondrial ribosomal protein S23 MRP-S23 PF10484.9 128 ZNF528-201 - 628 9.7e-07 29.1 0.0 3 8 0.11 1e+02 3.1 0.0 6 30 300 324 296 328 0.91 Mitochondrial ribosomal protein S23 MRP-S23 PF10484.9 128 ZNF528-201 - 628 9.7e-07 29.1 0.0 4 8 0.15 1.4e+02 2.7 0.0 6 31 328 353 325 362 0.92 Mitochondrial ribosomal protein S23 MRP-S23 PF10484.9 128 ZNF528-201 - 628 9.7e-07 29.1 0.0 5 8 0.021 19 5.5 0.0 7 31 413 437 411 464 0.94 Mitochondrial ribosomal protein S23 MRP-S23 PF10484.9 128 ZNF528-201 - 628 9.7e-07 29.1 0.0 6 8 0.019 18 5.6 0.0 6 31 496 521 493 525 0.91 Mitochondrial ribosomal protein S23 MRP-S23 PF10484.9 128 ZNF528-201 - 628 9.7e-07 29.1 0.0 7 8 0.62 5.8e+02 0.7 0.0 6 30 524 548 522 552 0.91 Mitochondrial ribosomal protein S23 MRP-S23 PF10484.9 128 ZNF528-201 - 628 9.7e-07 29.1 0.0 8 8 2 1.9e+03 -0.9 0.0 7 32 581 606 578 618 0.88 Mitochondrial ribosomal protein S23 # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF528-201.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF528-201.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF528-201.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF528-201.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF528-201.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:08:09 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF528-202.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF528-202.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF528-202.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF528-202.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF528-202.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:08:09 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZNF528-203 - 395 1.1e-103 335.5 109.8 1 15 4.5e-07 0.00028 21.2 1.7 9 25 2 18 1 19 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF528-203 - 395 1.1e-103 335.5 109.8 2 15 6.1e-12 3.8e-09 36.6 1.5 1 25 22 46 22 47 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF528-203 - 395 1.1e-103 335.5 109.8 3 15 4.1e-11 2.5e-08 34.0 1.5 2 25 51 74 50 75 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF528-203 - 395 1.1e-103 335.5 109.8 4 15 2.6e-11 1.6e-08 34.6 1.9 1 25 78 102 78 103 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF528-203 - 395 1.1e-103 335.5 109.8 5 15 2.6e-10 1.6e-07 31.4 0.6 2 25 107 130 106 130 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF528-203 - 395 1.1e-103 335.5 109.8 6 15 4.6e-09 2.8e-06 27.5 0.4 2 25 135 158 134 159 0.90 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF528-203 - 395 1.1e-103 335.5 109.8 7 15 3.5e-07 0.00021 21.5 0.2 2 25 163 186 163 187 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF528-203 - 395 1.1e-103 335.5 109.8 8 15 1.8e-08 1.1e-05 25.6 1.3 1 24 190 213 190 214 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF528-203 - 395 1.1e-103 335.5 109.8 9 15 7.5e-10 4.6e-07 30.0 0.5 1 25 218 242 218 243 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF528-203 - 395 1.1e-103 335.5 109.8 10 15 2.5e-09 1.5e-06 28.3 2.2 1 25 246 270 246 271 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF528-203 - 395 1.1e-103 335.5 109.8 11 15 7.8e-10 4.8e-07 29.9 1.6 2 25 275 298 274 299 0.90 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF528-203 - 395 1.1e-103 335.5 109.8 12 15 4.7e-11 2.9e-08 33.8 0.6 2 24 303 325 302 326 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF528-203 - 395 1.1e-103 335.5 109.8 13 15 8.1e-08 5e-05 23.5 0.5 1 25 330 354 330 355 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF528-203 - 395 1.1e-103 335.5 109.8 14 15 2.4e-09 1.5e-06 28.4 2.9 1 26 358 383 358 383 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF528-203 - 395 1.1e-103 335.5 109.8 15 15 2.4 1.5e+03 -0.1 0.1 2 9 387 394 386 395 0.85 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZNF528-203 - 395 2.6e-80 260.6 122.0 1 14 9.2e-09 5.7e-06 26.5 2.6 1 23 8 30 8 30 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF528-203 - 395 2.6e-80 260.6 122.0 2 14 4.6e-09 2.8e-06 27.5 2.6 1 23 36 58 36 58 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF528-203 - 395 2.6e-80 260.6 122.0 3 14 2.1e-08 1.3e-05 25.4 2.7 1 23 64 86 64 86 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF528-203 - 395 2.6e-80 260.6 122.0 4 14 1.4e-07 8.8e-05 22.7 2.1 1 23 92 114 92 114 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF528-203 - 395 2.6e-80 260.6 122.0 5 14 6.3e-08 3.9e-05 23.9 0.2 1 23 120 142 120 142 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF528-203 - 395 2.6e-80 260.6 122.0 6 14 5.9e-07 0.00037 20.8 4.0 1 23 148 170 148 170 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF528-203 - 395 2.6e-80 260.6 122.0 7 14 6.3e-08 3.9e-05 23.9 0.9 3 23 178 198 176 198 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF528-203 - 395 2.6e-80 260.6 122.0 8 14 4.2e-06 0.0026 18.1 0.5 1 23 204 226 204 226 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF528-203 - 395 2.6e-80 260.6 122.0 9 14 1.2e-08 7.5e-06 26.1 3.2 1 23 232 254 232 254 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF528-203 - 395 2.6e-80 260.6 122.0 10 14 2.7e-07 0.00017 21.9 3.3 1 23 260 282 260 282 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF528-203 - 395 2.6e-80 260.6 122.0 11 14 4.7e-09 2.9e-06 27.4 0.5 1 23 288 310 288 310 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF528-203 - 395 2.6e-80 260.6 122.0 12 14 4.8e-07 0.0003 21.1 0.6 1 23 316 338 316 338 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF528-203 - 395 2.6e-80 260.6 122.0 13 14 9.2e-08 5.7e-05 23.3 3.9 1 23 344 366 344 366 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF528-203 - 395 2.6e-80 260.6 122.0 14 14 1.9e-08 1.2e-05 25.5 2.3 1 23 372 394 372 394 0.99 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZNF528-203 - 395 2.2e-45 149.4 115.0 1 14 3.8e-06 0.0023 18.6 2.0 1 23 8 30 8 31 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF528-203 - 395 2.2e-45 149.4 115.0 2 14 9.3e-06 0.0058 17.4 2.3 1 23 36 58 36 59 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF528-203 - 395 2.2e-45 149.4 115.0 3 14 4.3e-05 0.026 15.3 2.2 1 23 64 86 64 87 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF528-203 - 395 2.2e-45 149.4 115.0 4 14 0.00056 0.35 11.8 1.8 1 23 92 114 92 115 0.86 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF528-203 - 395 2.2e-45 149.4 115.0 5 14 2.3e-05 0.014 16.1 0.3 1 23 120 142 120 143 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF528-203 - 395 2.2e-45 149.4 115.0 6 14 0.00039 0.24 12.3 3.3 1 23 148 170 148 171 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF528-203 - 395 2.2e-45 149.4 115.0 7 14 6e-07 0.00037 21.1 0.6 2 23 177 198 176 199 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF528-203 - 395 2.2e-45 149.4 115.0 8 14 0.00016 0.1 13.5 0.5 1 23 204 226 204 227 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF528-203 - 395 2.2e-45 149.4 115.0 9 14 2.7e-05 0.016 16.0 2.5 1 23 232 254 232 255 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF528-203 - 395 2.2e-45 149.4 115.0 10 14 6.5e-05 0.04 14.8 2.9 1 23 260 282 260 283 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF528-203 - 395 2.2e-45 149.4 115.0 11 14 1.4e-05 0.0085 16.9 0.4 1 23 288 310 288 311 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF528-203 - 395 2.2e-45 149.4 115.0 12 14 2.3e-05 0.014 16.1 0.7 1 23 316 338 316 339 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF528-203 - 395 2.2e-45 149.4 115.0 13 14 5.7e-05 0.035 14.9 2.1 1 23 344 366 344 367 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF528-203 - 395 2.2e-45 149.4 115.0 14 14 1.4e-05 0.0084 16.9 2.2 1 23 372 394 372 395 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF528-203 - 395 4.6e-23 80.7 106.3 1 14 0.00015 0.095 12.7 2.3 2 22 8 28 8 32 0.86 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF528-203 - 395 4.6e-23 80.7 106.3 2 14 0.00011 0.066 13.2 1.1 2 13 36 47 36 58 0.86 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF528-203 - 395 4.6e-23 80.7 106.3 3 14 0.00039 0.24 11.4 0.9 2 13 64 75 64 87 0.83 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF528-203 - 395 4.6e-23 80.7 106.3 4 14 0.0097 6 7.0 0.7 2 12 92 102 92 111 0.89 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF528-203 - 395 4.6e-23 80.7 106.3 5 14 0.0017 1 9.4 0.1 2 20 120 138 120 141 0.87 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF528-203 - 395 4.6e-23 80.7 106.3 6 14 0.00091 0.56 10.3 2.3 2 12 148 158 148 170 0.92 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF528-203 - 395 4.6e-23 80.7 106.3 7 14 8.2e-05 0.051 13.6 0.6 2 26 176 200 176 201 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF528-203 - 395 4.6e-23 80.7 106.3 8 14 0.024 15 5.7 0.4 2 20 204 222 204 222 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF528-203 - 395 4.6e-23 80.7 106.3 9 14 5.9e-06 0.0037 17.2 2.5 2 24 232 254 232 257 0.90 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF528-203 - 395 4.6e-23 80.7 106.3 10 14 0.01 6.3 6.9 2.4 2 17 260 275 260 283 0.79 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF528-203 - 395 4.6e-23 80.7 106.3 11 14 0.00058 0.36 10.9 0.5 2 12 288 298 288 300 0.95 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF528-203 - 395 4.6e-23 80.7 106.3 12 14 0.0016 1 9.4 1.8 2 24 316 338 316 341 0.88 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF528-203 - 395 4.6e-23 80.7 106.3 13 14 0.0024 1.5 8.9 2.0 2 19 344 361 343 366 0.76 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF528-203 - 395 4.6e-23 80.7 106.3 14 14 0.00098 0.6 10.2 0.7 2 12 372 382 372 394 0.89 C2H2-type zinc finger Zn-ribbon_8 PF09723.10 40 ZNF528-203 - 395 4.1e-19 68.4 73.2 1 13 0.00081 0.5 10.5 5.2 6 33 8 42 7 46 0.91 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF528-203 - 395 4.1e-19 68.4 73.2 2 13 0.0073 4.5 7.5 0.6 6 19 36 49 35 59 0.79 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF528-203 - 395 4.1e-19 68.4 73.2 3 13 4e-06 0.0025 17.9 2.2 6 35 64 100 63 105 0.91 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF528-203 - 395 4.1e-19 68.4 73.2 4 13 0.0053 3.3 7.9 0.2 6 17 92 103 90 115 0.83 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF528-203 - 395 4.1e-19 68.4 73.2 5 13 0.00045 0.28 11.3 0.1 6 20 120 134 118 142 0.86 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF528-203 - 395 4.1e-19 68.4 73.2 6 13 0.0011 0.67 10.1 5.2 6 34 148 183 147 189 0.91 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF528-203 - 395 4.1e-19 68.4 73.2 7 13 0.00011 0.069 13.3 3.2 6 37 176 214 175 217 0.82 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF528-203 - 395 4.1e-19 68.4 73.2 8 13 0.0029 1.8 8.8 0.4 6 19 204 217 203 222 0.86 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF528-203 - 395 4.1e-19 68.4 73.2 9 13 0.00028 0.17 12.0 5.3 6 34 232 267 231 271 0.88 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF528-203 - 395 4.1e-19 68.4 73.2 10 13 0.00014 0.084 13.0 4.6 6 34 260 295 259 295 0.91 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF528-203 - 395 4.1e-19 68.4 73.2 11 13 1.8e-05 0.011 15.8 2.6 6 35 288 324 287 326 0.86 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF528-203 - 395 4.1e-19 68.4 73.2 12 13 0.0001 0.064 13.4 4.1 6 34 316 351 315 357 0.79 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF528-203 - 395 4.1e-19 68.4 73.2 13 13 0.063 39 4.5 0.1 6 17 372 383 371 392 0.84 Zinc ribbon domain zf_UBZ PF18439.1 32 ZNF528-203 - 395 2.5e-12 46.1 67.6 1 14 0.0026 1.6 8.4 0.3 3 21 8 27 6 27 0.89 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF528-203 - 395 2.5e-12 46.1 67.6 2 14 0.0043 2.7 7.7 0.6 3 21 36 55 34 55 0.91 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF528-203 - 395 2.5e-12 46.1 67.6 3 14 0.084 52 3.6 0.2 3 13 64 74 62 79 0.86 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF528-203 - 395 2.5e-12 46.1 67.6 4 14 0.00049 0.31 10.7 0.2 3 21 92 111 90 111 0.92 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF528-203 - 395 2.5e-12 46.1 67.6 5 14 0.00078 0.48 10.1 0.1 3 20 120 138 118 139 0.84 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF528-203 - 395 2.5e-12 46.1 67.6 6 14 0.076 47 3.7 0.9 3 12 148 157 146 167 0.86 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF528-203 - 395 2.5e-12 46.1 67.6 7 14 0.023 14 5.4 0.1 3 15 176 188 175 195 0.78 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF528-203 - 395 2.5e-12 46.1 67.6 8 14 0.041 25 4.5 0.1 3 20 204 222 202 222 0.83 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF528-203 - 395 2.5e-12 46.1 67.6 9 14 0.015 9.5 5.9 0.3 3 13 232 242 230 251 0.74 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF528-203 - 395 2.5e-12 46.1 67.6 10 14 0.0019 1.2 8.8 0.3 3 20 260 278 258 280 0.84 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF528-203 - 395 2.5e-12 46.1 67.6 11 14 0.016 9.8 5.9 0.1 3 15 288 300 286 307 0.82 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF528-203 - 395 2.5e-12 46.1 67.6 12 14 0.03 19 5.0 0.3 3 12 316 325 314 326 0.87 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF528-203 - 395 2.5e-12 46.1 67.6 13 14 0.058 36 4.1 0.6 2 15 343 356 342 363 0.75 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF528-203 - 395 2.5e-12 46.1 67.6 14 14 0.015 9.5 5.9 0.2 3 21 372 391 370 391 0.94 Ubiquitin-Binding Zinc Finger zf-C2H2_jaz PF12171.8 27 ZNF528-203 - 395 4.5e-10 39.6 78.3 1 12 0.00039 0.24 11.7 0.5 2 22 8 28 7 28 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF528-203 - 395 4.5e-10 39.6 78.3 2 12 3e-05 0.019 15.3 0.7 2 22 36 56 35 56 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF528-203 - 395 4.5e-10 39.6 78.3 3 12 0.0023 1.4 9.3 1.8 2 22 64 84 63 84 0.90 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF528-203 - 395 4.5e-10 39.6 78.3 4 12 0.28 1.8e+02 2.6 0.3 3 21 93 111 91 112 0.85 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF528-203 - 395 4.5e-10 39.6 78.3 5 12 0.023 14 6.1 0.0 2 20 120 138 119 140 0.85 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF528-203 - 395 4.5e-10 39.6 78.3 6 12 0.0079 4.9 7.6 1.5 2 13 148 159 147 168 0.80 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF528-203 - 395 4.5e-10 39.6 78.3 7 12 0.049 30 5.0 0.5 4 24 178 198 176 198 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF528-203 - 395 4.5e-10 39.6 78.3 8 12 0.023 14 6.1 0.2 2 20 232 250 231 250 0.79 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF528-203 - 395 4.5e-10 39.6 78.3 9 12 0.71 4.4e+02 1.3 0.8 2 21 260 279 259 280 0.83 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF528-203 - 395 4.5e-10 39.6 78.3 10 12 0.087 54 4.2 0.3 2 21 288 307 287 308 0.89 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF528-203 - 395 4.5e-10 39.6 78.3 11 12 0.0066 4.1 7.8 1.3 2 20 344 362 343 363 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF528-203 - 395 4.5e-10 39.6 78.3 12 12 4.4e-05 0.027 14.7 0.5 2 22 372 392 371 392 0.93 Zinc-finger double-stranded RNA-binding zinc_ribbon_15 PF17032.5 86 ZNF528-203 - 395 2.3e-09 37.9 58.7 1 7 0.00052 0.32 11.8 2.7 36 78 6 48 1 54 0.85 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF528-203 - 395 2.3e-09 37.9 58.7 2 7 0.0027 1.6 9.5 2.1 31 76 57 102 50 106 0.86 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF528-203 - 395 2.3e-09 37.9 58.7 3 7 0.013 8.1 7.3 2.0 33 74 115 156 110 162 0.84 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF528-203 - 395 2.3e-09 37.9 58.7 4 7 0.00011 0.066 14.0 2.5 30 75 168 213 159 218 0.85 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF528-203 - 395 2.3e-09 37.9 58.7 5 7 0.0011 0.7 10.7 2.6 33 79 227 273 220 279 0.84 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF528-203 - 395 2.3e-09 37.9 58.7 6 7 0.0046 2.9 8.7 2.3 30 74 280 324 275 329 0.82 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF528-203 - 395 2.3e-09 37.9 58.7 7 7 0.0033 2.1 9.2 1.7 31 79 337 385 332 389 0.87 zinc-ribbon family C1_1 PF00130.22 53 ZNF528-203 - 395 2.2e-08 33.8 68.0 1 10 0.0041 2.6 8.0 1.7 9 36 5 43 1 45 0.82 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF528-203 - 395 2.2e-08 33.8 68.0 2 10 0.0076 4.7 7.2 2.4 5 37 30 72 26 75 0.80 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF528-203 - 395 2.2e-08 33.8 68.0 3 10 0.045 28 4.7 3.9 5 37 58 100 53 104 0.76 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF528-203 - 395 2.2e-08 33.8 68.0 4 10 0.0015 0.9 9.5 1.3 7 36 87 127 78 129 0.82 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF528-203 - 395 2.2e-08 33.8 68.0 5 10 1.8e-05 0.011 15.6 2.1 1 43 110 162 110 168 0.89 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF528-203 - 395 2.2e-08 33.8 68.0 6 10 0.01 6.3 6.8 2.7 4 36 169 211 166 213 0.80 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF528-203 - 395 2.2e-08 33.8 68.0 7 10 0.028 17 5.4 2.3 5 36 198 239 192 241 0.76 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF528-203 - 395 2.2e-08 33.8 68.0 8 10 0.099 61 3.6 10.6 9 50 229 285 221 300 0.58 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF528-203 - 395 2.2e-08 33.8 68.0 9 10 0.0059 3.6 7.5 0.3 1 25 306 330 306 335 0.83 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF528-203 - 395 2.2e-08 33.8 68.0 10 10 0.0091 5.6 6.9 4.5 5 38 338 381 334 387 0.82 Phorbol esters/diacylglycerol binding domain (C1 domain) zf-C2HE PF16278.5 64 ZNF528-203 - 395 4.1e-08 33.6 80.5 1 12 0.039 24 5.5 1.3 36 50 6 20 3 31 0.78 C2HE / C2H2 / C2HC zinc-binding finger zf-C2HE PF16278.5 64 ZNF528-203 - 395 4.1e-08 33.6 80.5 2 12 0.016 10 6.7 1.7 35 57 33 54 21 60 0.81 C2HE / C2H2 / C2HC zinc-binding finger zf-C2HE PF16278.5 64 ZNF528-203 - 395 4.1e-08 33.6 80.5 3 12 0.00038 0.24 11.9 2.2 35 61 61 86 48 89 0.82 C2HE / C2H2 / C2HC zinc-binding finger zf-C2HE PF16278.5 64 ZNF528-203 - 395 4.1e-08 33.6 80.5 4 12 0.15 92 3.6 0.8 36 48 90 102 86 115 0.78 C2HE / C2H2 / C2HC zinc-binding finger zf-C2HE PF16278.5 64 ZNF528-203 - 395 4.1e-08 33.6 80.5 5 12 2.1 1.3e+03 -0.1 4.5 35 49 145 159 102 161 0.64 C2HE / C2H2 / C2HC zinc-binding finger zf-C2HE PF16278.5 64 ZNF528-203 - 395 4.1e-08 33.6 80.5 6 12 0.021 13 6.3 0.2 34 63 172 200 163 201 0.83 C2HE / C2H2 / C2HC zinc-binding finger zf-C2HE PF16278.5 64 ZNF528-203 - 395 4.1e-08 33.6 80.5 7 12 2.5e-05 0.015 15.7 0.6 35 61 201 226 195 229 0.88 C2HE / C2H2 / C2HC zinc-binding finger zf-C2HE PF16278.5 64 ZNF528-203 - 395 4.1e-08 33.6 80.5 8 12 1.6 9.7e+02 0.3 0.5 36 48 230 241 226 254 0.78 C2HE / C2H2 / C2HC zinc-binding finger zf-C2HE PF16278.5 64 ZNF528-203 - 395 4.1e-08 33.6 80.5 9 12 0.015 9.4 6.8 1.1 35 49 257 271 242 282 0.79 C2HE / C2H2 / C2HC zinc-binding finger zf-C2HE PF16278.5 64 ZNF528-203 - 395 4.1e-08 33.6 80.5 10 12 0.0038 2.4 8.7 0.9 35 57 285 306 271 313 0.86 C2HE / C2H2 / C2HC zinc-binding finger zf-C2HE PF16278.5 64 ZNF528-203 - 395 4.1e-08 33.6 80.5 11 12 0.00092 0.57 10.7 0.2 35 64 313 341 301 341 0.90 C2HE / C2H2 / C2HC zinc-binding finger zf-C2HE PF16278.5 64 ZNF528-203 - 395 4.1e-08 33.6 80.5 12 12 1.2 7.5e+02 0.7 4.9 32 56 366 389 342 394 0.69 C2HE / C2H2 / C2HC zinc-binding finger MRP-S23 PF10484.9 128 ZNF528-203 - 395 6.1e-08 33.0 0.0 1 8 3.9 2.4e+03 -1.3 0.0 6 31 11 36 9 45 0.87 Mitochondrial ribosomal protein S23 MRP-S23 PF10484.9 128 ZNF528-203 - 395 6.1e-08 33.0 0.0 2 8 6 3.7e+03 -1.9 0.0 6 31 39 64 36 68 0.83 Mitochondrial ribosomal protein S23 MRP-S23 PF10484.9 128 ZNF528-203 - 395 6.1e-08 33.0 0.0 3 8 0.1 62 3.9 0.0 6 30 67 91 64 95 0.91 Mitochondrial ribosomal protein S23 MRP-S23 PF10484.9 128 ZNF528-203 - 395 6.1e-08 33.0 0.0 4 8 0.13 81 3.5 0.0 6 31 95 120 92 129 0.92 Mitochondrial ribosomal protein S23 MRP-S23 PF10484.9 128 ZNF528-203 - 395 6.1e-08 33.0 0.0 5 8 0.021 13 6.1 0.0 7 31 180 204 178 207 0.91 Mitochondrial ribosomal protein S23 MRP-S23 PF10484.9 128 ZNF528-203 - 395 6.1e-08 33.0 0.0 6 8 0.017 10 6.4 0.0 6 31 263 288 259 291 0.91 Mitochondrial ribosomal protein S23 MRP-S23 PF10484.9 128 ZNF528-203 - 395 6.1e-08 33.0 0.0 7 8 0.51 3.2e+02 1.6 0.0 6 30 291 315 288 319 0.91 Mitochondrial ribosomal protein S23 MRP-S23 PF10484.9 128 ZNF528-203 - 395 6.1e-08 33.0 0.0 8 8 1.6 1e+03 -0.0 0.0 7 32 348 373 345 390 0.88 Mitochondrial ribosomal protein S23 DZR PF12773.7 49 ZNF528-203 - 395 1.4e-07 31.4 56.6 1 3 1.9 1.2e+03 -0.3 11.9 31 44 38 51 2 110 0.47 Double zinc ribbon DZR PF12773.7 49 ZNF528-203 - 395 1.4e-07 31.4 56.6 2 3 8.9e-05 0.055 13.5 3.6 4 37 277 324 275 329 0.90 Double zinc ribbon DZR PF12773.7 49 ZNF528-203 - 395 1.4e-07 31.4 56.6 3 3 0.0028 1.7 8.7 0.5 9 42 340 385 333 390 0.85 Double zinc ribbon XPA_N PF01286.18 32 ZNF528-203 - 395 2.6e-07 30.6 55.6 1 14 0.028 17 5.5 0.2 3 12 9 18 7 26 0.82 XPA protein N-terminal XPA_N PF01286.18 32 ZNF528-203 - 395 2.6e-07 30.6 55.6 2 14 0.029 18 5.5 0.2 3 14 37 48 35 54 0.86 XPA protein N-terminal XPA_N PF01286.18 32 ZNF528-203 - 395 2.6e-07 30.6 55.6 3 14 0.12 76 3.5 0.3 3 12 65 74 63 75 0.85 XPA protein N-terminal XPA_N PF01286.18 32 ZNF528-203 - 395 2.6e-07 30.6 55.6 4 14 0.064 40 4.4 0.1 4 18 94 109 91 111 0.79 XPA protein N-terminal XPA_N PF01286.18 32 ZNF528-203 - 395 2.6e-07 30.6 55.6 5 14 0.0034 2.1 8.5 0.1 3 12 121 130 119 138 0.87 XPA protein N-terminal XPA_N PF01286.18 32 ZNF528-203 - 395 2.6e-07 30.6 55.6 6 14 0.091 56 3.9 1.0 3 12 149 158 147 165 0.87 XPA protein N-terminal XPA_N PF01286.18 32 ZNF528-203 - 395 2.6e-07 30.6 55.6 7 14 0.19 1.2e+02 2.9 0.1 4 12 178 186 176 191 0.91 XPA protein N-terminal XPA_N PF01286.18 32 ZNF528-203 - 395 2.6e-07 30.6 55.6 8 14 0.25 1.5e+02 2.5 0.1 3 12 205 214 203 224 0.82 XPA protein N-terminal XPA_N PF01286.18 32 ZNF528-203 - 395 2.6e-07 30.6 55.6 9 14 0.049 30 4.8 0.1 3 11 233 241 231 248 0.90 XPA protein N-terminal XPA_N PF01286.18 32 ZNF528-203 - 395 2.6e-07 30.6 55.6 10 14 0.19 1.2e+02 2.9 0.1 3 14 261 272 259 273 0.88 XPA protein N-terminal XPA_N PF01286.18 32 ZNF528-203 - 395 2.6e-07 30.6 55.6 11 14 0.021 13 5.9 0.0 3 18 289 304 287 307 0.76 XPA protein N-terminal XPA_N PF01286.18 32 ZNF528-203 - 395 2.6e-07 30.6 55.6 12 14 0.1 62 3.8 0.1 3 11 317 325 315 327 0.88 XPA protein N-terminal XPA_N PF01286.18 32 ZNF528-203 - 395 2.6e-07 30.6 55.6 13 14 0.0034 2.1 8.5 0.2 3 13 345 355 343 364 0.83 XPA protein N-terminal XPA_N PF01286.18 32 ZNF528-203 - 395 2.6e-07 30.6 55.6 14 14 2.2 1.4e+03 -0.5 0.1 3 11 373 381 371 385 0.85 XPA protein N-terminal # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF528-203.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF528-203.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF528-203.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF528-203.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF528-203.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:08:10 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF528-204.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF528-204.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF528-204.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF528-204.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF528-204.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:08:10 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF528-205.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF528-205.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF528-205.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF528-205.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF528-205.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:08:11 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF528-206.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF528-206.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF528-206.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF528-206.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF528-206.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:08:11 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF528-207.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF528-207.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF528-207.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF528-207.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF528-207.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:08:11 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF528-208.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF528-208.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF528-208.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF528-208.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF528-208.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:08:12 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF528-209.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF528-209.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF528-209.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF528-209.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF528-209.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:08:12 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- KRAB PF01352.27 42 ZNF528-210 - 106 4.6e-27 93.4 0.0 1 1 4e-31 7.2e-27 92.8 0.0 1 42 7 48 7 48 0.97 KRAB box # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF528-210.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF528-210.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF528-210.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF528-210.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF528-210.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:08:12 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- KRAB PF01352.27 42 ZNF528-211 - 91 3.1e-27 93.9 0.0 1 1 2.8e-31 5.1e-27 93.3 0.0 1 42 7 48 7 48 0.97 KRAB box # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF528-211.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF528-211.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF528-211.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF528-211.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF528-211.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:08:13 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZNF528-212 - 395 1.1e-103 335.5 109.8 1 15 4.5e-07 0.00028 21.2 1.7 9 25 2 18 1 19 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF528-212 - 395 1.1e-103 335.5 109.8 2 15 6.1e-12 3.8e-09 36.6 1.5 1 25 22 46 22 47 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF528-212 - 395 1.1e-103 335.5 109.8 3 15 4.1e-11 2.5e-08 34.0 1.5 2 25 51 74 50 75 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF528-212 - 395 1.1e-103 335.5 109.8 4 15 2.6e-11 1.6e-08 34.6 1.9 1 25 78 102 78 103 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF528-212 - 395 1.1e-103 335.5 109.8 5 15 2.6e-10 1.6e-07 31.4 0.6 2 25 107 130 106 130 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF528-212 - 395 1.1e-103 335.5 109.8 6 15 4.6e-09 2.8e-06 27.5 0.4 2 25 135 158 134 159 0.90 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF528-212 - 395 1.1e-103 335.5 109.8 7 15 3.5e-07 0.00021 21.5 0.2 2 25 163 186 163 187 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF528-212 - 395 1.1e-103 335.5 109.8 8 15 1.8e-08 1.1e-05 25.6 1.3 1 24 190 213 190 214 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF528-212 - 395 1.1e-103 335.5 109.8 9 15 7.5e-10 4.6e-07 30.0 0.5 1 25 218 242 218 243 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF528-212 - 395 1.1e-103 335.5 109.8 10 15 2.5e-09 1.5e-06 28.3 2.2 1 25 246 270 246 271 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF528-212 - 395 1.1e-103 335.5 109.8 11 15 7.8e-10 4.8e-07 29.9 1.6 2 25 275 298 274 299 0.90 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF528-212 - 395 1.1e-103 335.5 109.8 12 15 4.7e-11 2.9e-08 33.8 0.6 2 24 303 325 302 326 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF528-212 - 395 1.1e-103 335.5 109.8 13 15 8.1e-08 5e-05 23.5 0.5 1 25 330 354 330 355 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF528-212 - 395 1.1e-103 335.5 109.8 14 15 2.4e-09 1.5e-06 28.4 2.9 1 26 358 383 358 383 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF528-212 - 395 1.1e-103 335.5 109.8 15 15 2.4 1.5e+03 -0.1 0.1 2 9 387 394 386 395 0.85 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZNF528-212 - 395 2.6e-80 260.6 122.0 1 14 9.2e-09 5.7e-06 26.5 2.6 1 23 8 30 8 30 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF528-212 - 395 2.6e-80 260.6 122.0 2 14 4.6e-09 2.8e-06 27.5 2.6 1 23 36 58 36 58 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF528-212 - 395 2.6e-80 260.6 122.0 3 14 2.1e-08 1.3e-05 25.4 2.7 1 23 64 86 64 86 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF528-212 - 395 2.6e-80 260.6 122.0 4 14 1.4e-07 8.8e-05 22.7 2.1 1 23 92 114 92 114 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF528-212 - 395 2.6e-80 260.6 122.0 5 14 6.3e-08 3.9e-05 23.9 0.2 1 23 120 142 120 142 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF528-212 - 395 2.6e-80 260.6 122.0 6 14 5.9e-07 0.00037 20.8 4.0 1 23 148 170 148 170 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF528-212 - 395 2.6e-80 260.6 122.0 7 14 6.3e-08 3.9e-05 23.9 0.9 3 23 178 198 176 198 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF528-212 - 395 2.6e-80 260.6 122.0 8 14 4.2e-06 0.0026 18.1 0.5 1 23 204 226 204 226 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF528-212 - 395 2.6e-80 260.6 122.0 9 14 1.2e-08 7.5e-06 26.1 3.2 1 23 232 254 232 254 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF528-212 - 395 2.6e-80 260.6 122.0 10 14 2.7e-07 0.00017 21.9 3.3 1 23 260 282 260 282 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF528-212 - 395 2.6e-80 260.6 122.0 11 14 4.7e-09 2.9e-06 27.4 0.5 1 23 288 310 288 310 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF528-212 - 395 2.6e-80 260.6 122.0 12 14 4.8e-07 0.0003 21.1 0.6 1 23 316 338 316 338 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF528-212 - 395 2.6e-80 260.6 122.0 13 14 9.2e-08 5.7e-05 23.3 3.9 1 23 344 366 344 366 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF528-212 - 395 2.6e-80 260.6 122.0 14 14 1.9e-08 1.2e-05 25.5 2.3 1 23 372 394 372 394 0.99 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZNF528-212 - 395 2.2e-45 149.4 115.0 1 14 3.8e-06 0.0023 18.6 2.0 1 23 8 30 8 31 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF528-212 - 395 2.2e-45 149.4 115.0 2 14 9.3e-06 0.0058 17.4 2.3 1 23 36 58 36 59 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF528-212 - 395 2.2e-45 149.4 115.0 3 14 4.3e-05 0.026 15.3 2.2 1 23 64 86 64 87 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF528-212 - 395 2.2e-45 149.4 115.0 4 14 0.00056 0.35 11.8 1.8 1 23 92 114 92 115 0.86 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF528-212 - 395 2.2e-45 149.4 115.0 5 14 2.3e-05 0.014 16.1 0.3 1 23 120 142 120 143 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF528-212 - 395 2.2e-45 149.4 115.0 6 14 0.00039 0.24 12.3 3.3 1 23 148 170 148 171 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF528-212 - 395 2.2e-45 149.4 115.0 7 14 6e-07 0.00037 21.1 0.6 2 23 177 198 176 199 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF528-212 - 395 2.2e-45 149.4 115.0 8 14 0.00016 0.1 13.5 0.5 1 23 204 226 204 227 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF528-212 - 395 2.2e-45 149.4 115.0 9 14 2.7e-05 0.016 16.0 2.5 1 23 232 254 232 255 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF528-212 - 395 2.2e-45 149.4 115.0 10 14 6.5e-05 0.04 14.8 2.9 1 23 260 282 260 283 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF528-212 - 395 2.2e-45 149.4 115.0 11 14 1.4e-05 0.0085 16.9 0.4 1 23 288 310 288 311 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF528-212 - 395 2.2e-45 149.4 115.0 12 14 2.3e-05 0.014 16.1 0.7 1 23 316 338 316 339 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF528-212 - 395 2.2e-45 149.4 115.0 13 14 5.7e-05 0.035 14.9 2.1 1 23 344 366 344 367 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF528-212 - 395 2.2e-45 149.4 115.0 14 14 1.4e-05 0.0084 16.9 2.2 1 23 372 394 372 395 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF528-212 - 395 4.6e-23 80.7 106.3 1 14 0.00015 0.095 12.7 2.3 2 22 8 28 8 32 0.86 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF528-212 - 395 4.6e-23 80.7 106.3 2 14 0.00011 0.066 13.2 1.1 2 13 36 47 36 58 0.86 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF528-212 - 395 4.6e-23 80.7 106.3 3 14 0.00039 0.24 11.4 0.9 2 13 64 75 64 87 0.83 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF528-212 - 395 4.6e-23 80.7 106.3 4 14 0.0097 6 7.0 0.7 2 12 92 102 92 111 0.89 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF528-212 - 395 4.6e-23 80.7 106.3 5 14 0.0017 1 9.4 0.1 2 20 120 138 120 141 0.87 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF528-212 - 395 4.6e-23 80.7 106.3 6 14 0.00091 0.56 10.3 2.3 2 12 148 158 148 170 0.92 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF528-212 - 395 4.6e-23 80.7 106.3 7 14 8.2e-05 0.051 13.6 0.6 2 26 176 200 176 201 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF528-212 - 395 4.6e-23 80.7 106.3 8 14 0.024 15 5.7 0.4 2 20 204 222 204 222 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF528-212 - 395 4.6e-23 80.7 106.3 9 14 5.9e-06 0.0037 17.2 2.5 2 24 232 254 232 257 0.90 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF528-212 - 395 4.6e-23 80.7 106.3 10 14 0.01 6.3 6.9 2.4 2 17 260 275 260 283 0.79 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF528-212 - 395 4.6e-23 80.7 106.3 11 14 0.00058 0.36 10.9 0.5 2 12 288 298 288 300 0.95 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF528-212 - 395 4.6e-23 80.7 106.3 12 14 0.0016 1 9.4 1.8 2 24 316 338 316 341 0.88 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF528-212 - 395 4.6e-23 80.7 106.3 13 14 0.0024 1.5 8.9 2.0 2 19 344 361 343 366 0.76 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF528-212 - 395 4.6e-23 80.7 106.3 14 14 0.00098 0.6 10.2 0.7 2 12 372 382 372 394 0.89 C2H2-type zinc finger Zn-ribbon_8 PF09723.10 40 ZNF528-212 - 395 4.1e-19 68.4 73.2 1 13 0.00081 0.5 10.5 5.2 6 33 8 42 7 46 0.91 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF528-212 - 395 4.1e-19 68.4 73.2 2 13 0.0073 4.5 7.5 0.6 6 19 36 49 35 59 0.79 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF528-212 - 395 4.1e-19 68.4 73.2 3 13 4e-06 0.0025 17.9 2.2 6 35 64 100 63 105 0.91 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF528-212 - 395 4.1e-19 68.4 73.2 4 13 0.0053 3.3 7.9 0.2 6 17 92 103 90 115 0.83 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF528-212 - 395 4.1e-19 68.4 73.2 5 13 0.00045 0.28 11.3 0.1 6 20 120 134 118 142 0.86 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF528-212 - 395 4.1e-19 68.4 73.2 6 13 0.0011 0.67 10.1 5.2 6 34 148 183 147 189 0.91 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF528-212 - 395 4.1e-19 68.4 73.2 7 13 0.00011 0.069 13.3 3.2 6 37 176 214 175 217 0.82 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF528-212 - 395 4.1e-19 68.4 73.2 8 13 0.0029 1.8 8.8 0.4 6 19 204 217 203 222 0.86 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF528-212 - 395 4.1e-19 68.4 73.2 9 13 0.00028 0.17 12.0 5.3 6 34 232 267 231 271 0.88 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF528-212 - 395 4.1e-19 68.4 73.2 10 13 0.00014 0.084 13.0 4.6 6 34 260 295 259 295 0.91 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF528-212 - 395 4.1e-19 68.4 73.2 11 13 1.8e-05 0.011 15.8 2.6 6 35 288 324 287 326 0.86 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF528-212 - 395 4.1e-19 68.4 73.2 12 13 0.0001 0.064 13.4 4.1 6 34 316 351 315 357 0.79 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF528-212 - 395 4.1e-19 68.4 73.2 13 13 0.063 39 4.5 0.1 6 17 372 383 371 392 0.84 Zinc ribbon domain zf_UBZ PF18439.1 32 ZNF528-212 - 395 2.5e-12 46.1 67.6 1 14 0.0026 1.6 8.4 0.3 3 21 8 27 6 27 0.89 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF528-212 - 395 2.5e-12 46.1 67.6 2 14 0.0043 2.7 7.7 0.6 3 21 36 55 34 55 0.91 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF528-212 - 395 2.5e-12 46.1 67.6 3 14 0.084 52 3.6 0.2 3 13 64 74 62 79 0.86 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF528-212 - 395 2.5e-12 46.1 67.6 4 14 0.00049 0.31 10.7 0.2 3 21 92 111 90 111 0.92 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF528-212 - 395 2.5e-12 46.1 67.6 5 14 0.00078 0.48 10.1 0.1 3 20 120 138 118 139 0.84 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF528-212 - 395 2.5e-12 46.1 67.6 6 14 0.076 47 3.7 0.9 3 12 148 157 146 167 0.86 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF528-212 - 395 2.5e-12 46.1 67.6 7 14 0.023 14 5.4 0.1 3 15 176 188 175 195 0.78 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF528-212 - 395 2.5e-12 46.1 67.6 8 14 0.041 25 4.5 0.1 3 20 204 222 202 222 0.83 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF528-212 - 395 2.5e-12 46.1 67.6 9 14 0.015 9.5 5.9 0.3 3 13 232 242 230 251 0.74 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF528-212 - 395 2.5e-12 46.1 67.6 10 14 0.0019 1.2 8.8 0.3 3 20 260 278 258 280 0.84 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF528-212 - 395 2.5e-12 46.1 67.6 11 14 0.016 9.8 5.9 0.1 3 15 288 300 286 307 0.82 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF528-212 - 395 2.5e-12 46.1 67.6 12 14 0.03 19 5.0 0.3 3 12 316 325 314 326 0.87 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF528-212 - 395 2.5e-12 46.1 67.6 13 14 0.058 36 4.1 0.6 2 15 343 356 342 363 0.75 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF528-212 - 395 2.5e-12 46.1 67.6 14 14 0.015 9.5 5.9 0.2 3 21 372 391 370 391 0.94 Ubiquitin-Binding Zinc Finger zf-C2H2_jaz PF12171.8 27 ZNF528-212 - 395 4.5e-10 39.6 78.3 1 12 0.00039 0.24 11.7 0.5 2 22 8 28 7 28 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF528-212 - 395 4.5e-10 39.6 78.3 2 12 3e-05 0.019 15.3 0.7 2 22 36 56 35 56 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF528-212 - 395 4.5e-10 39.6 78.3 3 12 0.0023 1.4 9.3 1.8 2 22 64 84 63 84 0.90 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF528-212 - 395 4.5e-10 39.6 78.3 4 12 0.28 1.8e+02 2.6 0.3 3 21 93 111 91 112 0.85 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF528-212 - 395 4.5e-10 39.6 78.3 5 12 0.023 14 6.1 0.0 2 20 120 138 119 140 0.85 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF528-212 - 395 4.5e-10 39.6 78.3 6 12 0.0079 4.9 7.6 1.5 2 13 148 159 147 168 0.80 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF528-212 - 395 4.5e-10 39.6 78.3 7 12 0.049 30 5.0 0.5 4 24 178 198 176 198 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF528-212 - 395 4.5e-10 39.6 78.3 8 12 0.023 14 6.1 0.2 2 20 232 250 231 250 0.79 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF528-212 - 395 4.5e-10 39.6 78.3 9 12 0.71 4.4e+02 1.3 0.8 2 21 260 279 259 280 0.83 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF528-212 - 395 4.5e-10 39.6 78.3 10 12 0.087 54 4.2 0.3 2 21 288 307 287 308 0.89 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF528-212 - 395 4.5e-10 39.6 78.3 11 12 0.0066 4.1 7.8 1.3 2 20 344 362 343 363 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF528-212 - 395 4.5e-10 39.6 78.3 12 12 4.4e-05 0.027 14.7 0.5 2 22 372 392 371 392 0.93 Zinc-finger double-stranded RNA-binding zinc_ribbon_15 PF17032.5 86 ZNF528-212 - 395 2.3e-09 37.9 58.7 1 7 0.00052 0.32 11.8 2.7 36 78 6 48 1 54 0.85 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF528-212 - 395 2.3e-09 37.9 58.7 2 7 0.0027 1.6 9.5 2.1 31 76 57 102 50 106 0.86 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF528-212 - 395 2.3e-09 37.9 58.7 3 7 0.013 8.1 7.3 2.0 33 74 115 156 110 162 0.84 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF528-212 - 395 2.3e-09 37.9 58.7 4 7 0.00011 0.066 14.0 2.5 30 75 168 213 159 218 0.85 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF528-212 - 395 2.3e-09 37.9 58.7 5 7 0.0011 0.7 10.7 2.6 33 79 227 273 220 279 0.84 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF528-212 - 395 2.3e-09 37.9 58.7 6 7 0.0046 2.9 8.7 2.3 30 74 280 324 275 329 0.82 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF528-212 - 395 2.3e-09 37.9 58.7 7 7 0.0033 2.1 9.2 1.7 31 79 337 385 332 389 0.87 zinc-ribbon family C1_1 PF00130.22 53 ZNF528-212 - 395 2.2e-08 33.8 68.0 1 10 0.0041 2.6 8.0 1.7 9 36 5 43 1 45 0.82 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF528-212 - 395 2.2e-08 33.8 68.0 2 10 0.0076 4.7 7.2 2.4 5 37 30 72 26 75 0.80 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF528-212 - 395 2.2e-08 33.8 68.0 3 10 0.045 28 4.7 3.9 5 37 58 100 53 104 0.76 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF528-212 - 395 2.2e-08 33.8 68.0 4 10 0.0015 0.9 9.5 1.3 7 36 87 127 78 129 0.82 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF528-212 - 395 2.2e-08 33.8 68.0 5 10 1.8e-05 0.011 15.6 2.1 1 43 110 162 110 168 0.89 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF528-212 - 395 2.2e-08 33.8 68.0 6 10 0.01 6.3 6.8 2.7 4 36 169 211 166 213 0.80 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF528-212 - 395 2.2e-08 33.8 68.0 7 10 0.028 17 5.4 2.3 5 36 198 239 192 241 0.76 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF528-212 - 395 2.2e-08 33.8 68.0 8 10 0.099 61 3.6 10.6 9 50 229 285 221 300 0.58 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF528-212 - 395 2.2e-08 33.8 68.0 9 10 0.0059 3.6 7.5 0.3 1 25 306 330 306 335 0.83 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF528-212 - 395 2.2e-08 33.8 68.0 10 10 0.0091 5.6 6.9 4.5 5 38 338 381 334 387 0.82 Phorbol esters/diacylglycerol binding domain (C1 domain) zf-C2HE PF16278.5 64 ZNF528-212 - 395 4.1e-08 33.6 80.5 1 12 0.039 24 5.5 1.3 36 50 6 20 3 31 0.78 C2HE / C2H2 / C2HC zinc-binding finger zf-C2HE PF16278.5 64 ZNF528-212 - 395 4.1e-08 33.6 80.5 2 12 0.016 10 6.7 1.7 35 57 33 54 21 60 0.81 C2HE / C2H2 / C2HC zinc-binding finger zf-C2HE PF16278.5 64 ZNF528-212 - 395 4.1e-08 33.6 80.5 3 12 0.00038 0.24 11.9 2.2 35 61 61 86 48 89 0.82 C2HE / C2H2 / C2HC zinc-binding finger zf-C2HE PF16278.5 64 ZNF528-212 - 395 4.1e-08 33.6 80.5 4 12 0.15 92 3.6 0.8 36 48 90 102 86 115 0.78 C2HE / C2H2 / C2HC zinc-binding finger zf-C2HE PF16278.5 64 ZNF528-212 - 395 4.1e-08 33.6 80.5 5 12 2.1 1.3e+03 -0.1 4.5 35 49 145 159 102 161 0.64 C2HE / C2H2 / C2HC zinc-binding finger zf-C2HE PF16278.5 64 ZNF528-212 - 395 4.1e-08 33.6 80.5 6 12 0.021 13 6.3 0.2 34 63 172 200 163 201 0.83 C2HE / C2H2 / C2HC zinc-binding finger zf-C2HE PF16278.5 64 ZNF528-212 - 395 4.1e-08 33.6 80.5 7 12 2.5e-05 0.015 15.7 0.6 35 61 201 226 195 229 0.88 C2HE / C2H2 / C2HC zinc-binding finger zf-C2HE PF16278.5 64 ZNF528-212 - 395 4.1e-08 33.6 80.5 8 12 1.6 9.7e+02 0.3 0.5 36 48 230 241 226 254 0.78 C2HE / C2H2 / C2HC zinc-binding finger zf-C2HE PF16278.5 64 ZNF528-212 - 395 4.1e-08 33.6 80.5 9 12 0.015 9.4 6.8 1.1 35 49 257 271 242 282 0.79 C2HE / C2H2 / C2HC zinc-binding finger zf-C2HE PF16278.5 64 ZNF528-212 - 395 4.1e-08 33.6 80.5 10 12 0.0038 2.4 8.7 0.9 35 57 285 306 271 313 0.86 C2HE / C2H2 / C2HC zinc-binding finger zf-C2HE PF16278.5 64 ZNF528-212 - 395 4.1e-08 33.6 80.5 11 12 0.00092 0.57 10.7 0.2 35 64 313 341 301 341 0.90 C2HE / C2H2 / C2HC zinc-binding finger zf-C2HE PF16278.5 64 ZNF528-212 - 395 4.1e-08 33.6 80.5 12 12 1.2 7.5e+02 0.7 4.9 32 56 366 389 342 394 0.69 C2HE / C2H2 / C2HC zinc-binding finger MRP-S23 PF10484.9 128 ZNF528-212 - 395 6.1e-08 33.0 0.0 1 8 3.9 2.4e+03 -1.3 0.0 6 31 11 36 9 45 0.87 Mitochondrial ribosomal protein S23 MRP-S23 PF10484.9 128 ZNF528-212 - 395 6.1e-08 33.0 0.0 2 8 6 3.7e+03 -1.9 0.0 6 31 39 64 36 68 0.83 Mitochondrial ribosomal protein S23 MRP-S23 PF10484.9 128 ZNF528-212 - 395 6.1e-08 33.0 0.0 3 8 0.1 62 3.9 0.0 6 30 67 91 64 95 0.91 Mitochondrial ribosomal protein S23 MRP-S23 PF10484.9 128 ZNF528-212 - 395 6.1e-08 33.0 0.0 4 8 0.13 81 3.5 0.0 6 31 95 120 92 129 0.92 Mitochondrial ribosomal protein S23 MRP-S23 PF10484.9 128 ZNF528-212 - 395 6.1e-08 33.0 0.0 5 8 0.021 13 6.1 0.0 7 31 180 204 178 207 0.91 Mitochondrial ribosomal protein S23 MRP-S23 PF10484.9 128 ZNF528-212 - 395 6.1e-08 33.0 0.0 6 8 0.017 10 6.4 0.0 6 31 263 288 259 291 0.91 Mitochondrial ribosomal protein S23 MRP-S23 PF10484.9 128 ZNF528-212 - 395 6.1e-08 33.0 0.0 7 8 0.51 3.2e+02 1.6 0.0 6 30 291 315 288 319 0.91 Mitochondrial ribosomal protein S23 MRP-S23 PF10484.9 128 ZNF528-212 - 395 6.1e-08 33.0 0.0 8 8 1.6 1e+03 -0.0 0.0 7 32 348 373 345 390 0.88 Mitochondrial ribosomal protein S23 DZR PF12773.7 49 ZNF528-212 - 395 1.4e-07 31.4 56.6 1 3 1.9 1.2e+03 -0.3 11.9 31 44 38 51 2 110 0.47 Double zinc ribbon DZR PF12773.7 49 ZNF528-212 - 395 1.4e-07 31.4 56.6 2 3 8.9e-05 0.055 13.5 3.6 4 37 277 324 275 329 0.90 Double zinc ribbon DZR PF12773.7 49 ZNF528-212 - 395 1.4e-07 31.4 56.6 3 3 0.0028 1.7 8.7 0.5 9 42 340 385 333 390 0.85 Double zinc ribbon XPA_N PF01286.18 32 ZNF528-212 - 395 2.6e-07 30.6 55.6 1 14 0.028 17 5.5 0.2 3 12 9 18 7 26 0.82 XPA protein N-terminal XPA_N PF01286.18 32 ZNF528-212 - 395 2.6e-07 30.6 55.6 2 14 0.029 18 5.5 0.2 3 14 37 48 35 54 0.86 XPA protein N-terminal XPA_N PF01286.18 32 ZNF528-212 - 395 2.6e-07 30.6 55.6 3 14 0.12 76 3.5 0.3 3 12 65 74 63 75 0.85 XPA protein N-terminal XPA_N PF01286.18 32 ZNF528-212 - 395 2.6e-07 30.6 55.6 4 14 0.064 40 4.4 0.1 4 18 94 109 91 111 0.79 XPA protein N-terminal XPA_N PF01286.18 32 ZNF528-212 - 395 2.6e-07 30.6 55.6 5 14 0.0034 2.1 8.5 0.1 3 12 121 130 119 138 0.87 XPA protein N-terminal XPA_N PF01286.18 32 ZNF528-212 - 395 2.6e-07 30.6 55.6 6 14 0.091 56 3.9 1.0 3 12 149 158 147 165 0.87 XPA protein N-terminal XPA_N PF01286.18 32 ZNF528-212 - 395 2.6e-07 30.6 55.6 7 14 0.19 1.2e+02 2.9 0.1 4 12 178 186 176 191 0.91 XPA protein N-terminal XPA_N PF01286.18 32 ZNF528-212 - 395 2.6e-07 30.6 55.6 8 14 0.25 1.5e+02 2.5 0.1 3 12 205 214 203 224 0.82 XPA protein N-terminal XPA_N PF01286.18 32 ZNF528-212 - 395 2.6e-07 30.6 55.6 9 14 0.049 30 4.8 0.1 3 11 233 241 231 248 0.90 XPA protein N-terminal XPA_N PF01286.18 32 ZNF528-212 - 395 2.6e-07 30.6 55.6 10 14 0.19 1.2e+02 2.9 0.1 3 14 261 272 259 273 0.88 XPA protein N-terminal XPA_N PF01286.18 32 ZNF528-212 - 395 2.6e-07 30.6 55.6 11 14 0.021 13 5.9 0.0 3 18 289 304 287 307 0.76 XPA protein N-terminal XPA_N PF01286.18 32 ZNF528-212 - 395 2.6e-07 30.6 55.6 12 14 0.1 62 3.8 0.1 3 11 317 325 315 327 0.88 XPA protein N-terminal XPA_N PF01286.18 32 ZNF528-212 - 395 2.6e-07 30.6 55.6 13 14 0.0034 2.1 8.5 0.2 3 13 345 355 343 364 0.83 XPA protein N-terminal XPA_N PF01286.18 32 ZNF528-212 - 395 2.6e-07 30.6 55.6 14 14 2.2 1.4e+03 -0.5 0.1 3 11 373 381 371 385 0.85 XPA protein N-terminal # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF528-212.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF528-212.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF528-212.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF528-212.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF528-212.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:08:13 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZNF529-201 - 458 1.7e-85 277.9 95.1 1 14 0.0059 5 7.7 0.6 7 25 58 76 46 77 0.82 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF529-201 - 458 1.7e-85 277.9 95.1 2 14 0.00031 0.27 11.7 0.2 7 24 86 103 85 104 0.90 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF529-201 - 458 1.7e-85 277.9 95.1 3 14 0.39 3.4e+02 2.0 0.2 8 19 115 133 113 137 0.78 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF529-201 - 458 1.7e-85 277.9 95.1 4 14 0.02 17 6.1 0.6 10 25 144 159 141 160 0.87 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF529-201 - 458 1.7e-85 277.9 95.1 5 14 4.8e-07 0.00041 20.6 1.3 7 24 169 186 168 187 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF529-201 - 458 1.7e-85 277.9 95.1 6 14 8.4e-09 7.2e-06 26.2 1.1 2 24 192 214 191 215 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF529-201 - 458 1.7e-85 277.9 95.1 7 14 3.6e-10 3.1e-07 30.5 2.4 2 24 220 242 219 243 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF529-201 - 458 1.7e-85 277.9 95.1 8 14 1.2e-10 1e-07 32.1 0.2 3 24 249 270 247 271 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF529-201 - 458 1.7e-85 277.9 95.1 9 14 2.9e-12 2.5e-09 37.1 0.6 2 26 276 300 275 300 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF529-201 - 458 1.7e-85 277.9 95.1 10 14 1.9e-12 1.6e-09 37.8 1.1 1 24 303 326 303 327 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF529-201 - 458 1.7e-85 277.9 95.1 11 14 1.4e-10 1.2e-07 31.9 1.5 2 24 332 354 331 355 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF529-201 - 458 1.7e-85 277.9 95.1 12 14 3.5e-11 3e-08 33.7 0.5 1 26 359 384 359 384 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF529-201 - 458 1.7e-85 277.9 95.1 13 14 2.6e-12 2.2e-09 37.3 1.0 1 26 387 412 387 412 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF529-201 - 458 1.7e-85 277.9 95.1 14 14 1.2e-08 1e-05 25.7 1.0 2 24 416 438 415 439 0.93 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZNF529-201 - 458 2.1e-49 163.3 77.2 1 11 0.07 60 4.4 0.5 1 10 94 103 94 104 0.95 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF529-201 - 458 2.1e-49 163.3 77.2 2 11 3.9e-07 0.00033 20.9 2.4 1 23 177 199 177 199 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF529-201 - 458 2.1e-49 163.3 77.2 3 11 3.7e-07 0.00032 21.0 2.8 1 23 205 227 205 227 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF529-201 - 458 2.1e-49 163.3 77.2 4 11 5.7e-07 0.00049 20.4 1.6 1 23 233 255 233 255 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF529-201 - 458 2.1e-49 163.3 77.2 5 11 1.1e-06 0.00094 19.5 0.4 1 23 261 283 261 283 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF529-201 - 458 2.1e-49 163.3 77.2 6 11 1.7e-09 1.5e-06 28.4 0.9 1 23 289 311 289 311 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF529-201 - 458 2.1e-49 163.3 77.2 7 11 5.2e-06 0.0044 17.4 0.1 1 23 317 339 317 339 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF529-201 - 458 2.1e-49 163.3 77.2 8 11 2.9e-07 0.00025 21.3 0.4 1 23 345 367 345 367 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF529-201 - 458 2.1e-49 163.3 77.2 9 11 5.6e-09 4.8e-06 26.7 0.9 1 23 373 395 373 395 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF529-201 - 458 2.1e-49 163.3 77.2 10 11 6.3e-08 5.4e-05 23.4 2.9 1 23 401 423 401 423 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF529-201 - 458 2.1e-49 163.3 77.2 11 11 0.0059 5 7.8 0.1 1 16 429 444 429 445 0.87 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZNF529-201 - 458 2.8e-25 86.8 73.5 1 11 2 1.7e+03 0.3 0.1 1 8 94 101 94 112 0.77 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF529-201 - 458 2.8e-25 86.8 73.5 2 11 9.5e-06 0.0081 16.9 2.3 1 23 177 199 177 200 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF529-201 - 458 2.8e-25 86.8 73.5 3 11 0.00065 0.56 11.2 2.0 1 23 205 227 205 228 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF529-201 - 458 2.8e-25 86.8 73.5 4 11 0.00017 0.14 13.1 1.4 1 23 233 255 233 256 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF529-201 - 458 2.8e-25 86.8 73.5 5 11 6.2e-05 0.053 14.4 0.6 1 23 261 283 261 284 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF529-201 - 458 2.8e-25 86.8 73.5 6 11 2.1e-06 0.0018 19.0 0.7 1 23 289 311 289 312 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF529-201 - 458 2.8e-25 86.8 73.5 7 11 0.00024 0.2 12.6 0.2 1 23 317 339 317 340 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF529-201 - 458 2.8e-25 86.8 73.5 8 11 0.00016 0.14 13.1 0.5 1 23 345 367 345 368 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF529-201 - 458 2.8e-25 86.8 73.5 9 11 8.6e-05 0.074 13.9 1.0 1 23 373 395 373 396 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF529-201 - 458 2.8e-25 86.8 73.5 10 11 0.00063 0.54 11.2 2.4 1 23 401 423 401 424 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF529-201 - 458 2.8e-25 86.8 73.5 11 11 0.017 14 6.8 0.2 1 15 429 443 429 445 0.81 C2H2-type zinc finger Zn-ribbon_8 PF09723.10 40 ZNF529-201 - 458 4.1e-15 55.6 57.7 1 10 0.0071 6.1 7.1 0.6 10 32 76 99 66 104 0.77 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF529-201 - 458 4.1e-15 55.6 57.7 2 10 0.0098 8.4 6.6 1.7 6 35 149 185 131 187 0.91 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF529-201 - 458 4.1e-15 55.6 57.7 3 10 2.6e-05 0.022 14.8 3.3 6 36 177 214 176 217 0.90 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF529-201 - 458 4.1e-15 55.6 57.7 4 10 0.00028 0.24 11.6 3.7 6 34 205 240 203 243 0.91 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF529-201 - 458 4.1e-15 55.6 57.7 5 10 0.0001 0.089 12.9 2.8 6 34 233 268 232 276 0.92 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF529-201 - 458 4.1e-15 55.6 57.7 6 10 1e-05 0.0085 16.2 2.3 6 34 289 324 288 327 0.92 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF529-201 - 458 4.1e-15 55.6 57.7 7 10 2.4e-05 0.021 14.9 2.2 6 36 345 382 344 384 0.89 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF529-201 - 458 4.1e-15 55.6 57.7 8 10 4.5e-05 0.039 14.1 3.4 6 35 373 409 372 411 0.92 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF529-201 - 458 4.1e-15 55.6 57.7 9 10 9.2e-06 0.0078 16.3 4.9 6 34 401 436 400 441 0.87 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF529-201 - 458 4.1e-15 55.6 57.7 10 10 0.002 1.7 8.8 0.7 6 18 429 441 427 448 0.87 Zinc ribbon domain zf-C2H2_jaz PF12171.8 27 ZNF529-201 - 458 7.9e-14 51.5 45.7 1 11 0.0063 5.4 7.4 1.4 2 22 177 197 176 197 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF529-201 - 458 7.9e-14 51.5 45.7 2 11 0.024 20 5.6 0.9 2 22 205 225 204 225 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF529-201 - 458 7.9e-14 51.5 45.7 3 11 0.0024 2.1 8.7 0.4 2 22 233 253 232 253 0.91 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF529-201 - 458 7.9e-14 51.5 45.7 4 11 0.43 3.7e+02 1.6 0.1 2 11 261 270 260 271 0.86 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF529-201 - 458 7.9e-14 51.5 45.7 5 11 8.7e-06 0.0074 16.6 0.0 2 22 289 309 288 309 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF529-201 - 458 7.9e-14 51.5 45.7 6 11 0.029 25 5.3 0.0 2 12 317 327 316 337 0.75 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF529-201 - 458 7.9e-14 51.5 45.7 7 11 0.016 14 6.1 0.1 2 21 345 364 344 365 0.83 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF529-201 - 458 7.9e-14 51.5 45.7 8 11 9.8e-05 0.084 13.2 0.1 2 22 373 393 372 393 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF529-201 - 458 7.9e-14 51.5 45.7 9 11 6.6e-05 0.056 13.7 0.3 2 22 401 421 400 421 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF529-201 - 458 7.9e-14 51.5 45.7 10 11 3.1 2.7e+03 -1.2 0.2 2 7 429 434 428 438 0.87 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF529-201 - 458 7.9e-14 51.5 45.7 11 11 6.5 5.5e+03 -2.2 0.0 6 18 445 458 444 458 0.87 Zinc-finger double-stranded RNA-binding zf-C2H2_6 PF13912.6 27 ZNF529-201 - 458 2.2e-13 49.9 72.8 1 11 0.014 12 6.1 0.2 2 11 94 103 93 104 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF529-201 - 458 2.2e-13 49.9 72.8 2 11 0.00097 0.83 9.7 1.3 1 12 176 187 176 200 0.91 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF529-201 - 458 2.2e-13 49.9 72.8 3 11 0.018 16 5.7 0.8 2 12 205 215 204 228 0.81 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF529-201 - 458 2.2e-13 49.9 72.8 4 11 0.14 1.2e+02 2.8 0.5 2 12 233 243 233 256 0.79 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF529-201 - 458 2.2e-13 49.9 72.8 5 11 0.0044 3.8 7.6 0.5 2 12 261 271 261 281 0.92 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF529-201 - 458 2.2e-13 49.9 72.8 6 11 0.00055 0.47 10.5 0.5 2 21 289 308 289 313 0.82 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF529-201 - 458 2.2e-13 49.9 72.8 7 11 0.00029 0.25 11.4 0.6 2 24 317 339 317 342 0.87 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF529-201 - 458 2.2e-13 49.9 72.8 8 11 0.00036 0.3 11.1 0.6 2 24 345 367 345 370 0.87 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF529-201 - 458 2.2e-13 49.9 72.8 9 11 1.5e-05 0.013 15.5 1.1 2 24 373 395 373 398 0.91 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF529-201 - 458 2.2e-13 49.9 72.8 10 11 0.011 9.8 6.3 1.1 2 12 401 411 401 423 0.90 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF529-201 - 458 2.2e-13 49.9 72.8 11 11 0.00088 0.75 9.9 1.3 2 12 429 439 429 439 0.95 C2H2-type zinc finger # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF529-201.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF529-201.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF529-201.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF529-201.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF529-201.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:08:14 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF529-202.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF529-202.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF529-202.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF529-202.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF529-202.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:08:14 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF529-203.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF529-203.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF529-203.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF529-203.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF529-203.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:08:14 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF529-204.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF529-204.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF529-204.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF529-204.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF529-204.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:08:15 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF529-205.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF529-205.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF529-205.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF529-205.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF529-205.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:08:16 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF529-206.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF529-206.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF529-206.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF529-206.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF529-206.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:08:17 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF529-207.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF529-207.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF529-207.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF529-207.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF529-207.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:08:17 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF529-208.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF529-208.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF529-208.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF529-208.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF529-208.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:08:17 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZNF529-209 - 563 4.8e-84 273.3 95.1 1 14 0.0069 6.5 7.4 0.6 7 25 163 181 151 182 0.82 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF529-209 - 563 4.8e-84 273.3 95.1 2 14 0.00036 0.34 11.4 0.2 7 24 191 208 190 209 0.90 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF529-209 - 563 4.8e-84 273.3 95.1 3 14 0.45 4.3e+02 1.6 0.2 8 19 220 238 218 242 0.78 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF529-209 - 563 4.8e-84 273.3 95.1 4 14 0.022 21 5.7 0.6 10 25 249 264 246 265 0.87 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF529-209 - 563 4.8e-84 273.3 95.1 5 14 5.5e-07 0.00052 20.3 1.3 7 24 274 291 273 292 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF529-209 - 563 4.8e-84 273.3 95.1 6 14 9.8e-09 9.2e-06 25.9 1.1 2 24 297 319 296 320 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF529-209 - 563 4.8e-84 273.3 95.1 7 14 4.2e-10 4e-07 30.2 2.4 2 24 325 347 324 348 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF529-209 - 563 4.8e-84 273.3 95.1 8 14 1.4e-10 1.3e-07 31.7 0.2 3 24 354 375 352 376 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF529-209 - 563 4.8e-84 273.3 95.1 9 14 3.4e-12 3.2e-09 36.8 0.6 2 26 381 405 380 405 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF529-209 - 563 4.8e-84 273.3 95.1 10 14 2.2e-12 2e-09 37.4 1.1 1 24 408 431 408 432 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF529-209 - 563 4.8e-84 273.3 95.1 11 14 1.6e-10 1.5e-07 31.5 1.5 2 24 437 459 436 460 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF529-209 - 563 4.8e-84 273.3 95.1 12 14 4.1e-11 3.9e-08 33.4 0.5 1 26 464 489 464 489 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF529-209 - 563 4.8e-84 273.3 95.1 13 14 3e-12 2.8e-09 37.0 1.0 1 26 492 517 492 517 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF529-209 - 563 4.8e-84 273.3 95.1 14 14 1.4e-08 1.3e-05 25.3 1.0 2 24 521 543 520 544 0.93 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZNF529-209 - 563 3.1e-48 159.6 77.2 1 11 0.08 76 4.1 0.5 1 10 199 208 199 209 0.95 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF529-209 - 563 3.1e-48 159.6 77.2 2 11 4.5e-07 0.00042 20.6 2.4 1 23 282 304 282 304 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF529-209 - 563 3.1e-48 159.6 77.2 3 11 4.3e-07 0.00041 20.7 2.8 1 23 310 332 310 332 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF529-209 - 563 3.1e-48 159.6 77.2 4 11 6.6e-07 0.00062 20.1 1.6 1 23 338 360 338 360 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF529-209 - 563 3.1e-48 159.6 77.2 5 11 1.3e-06 0.0012 19.2 0.4 1 23 366 388 366 388 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF529-209 - 563 3.1e-48 159.6 77.2 6 11 2e-09 1.9e-06 28.0 0.9 1 23 394 416 394 416 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF529-209 - 563 3.1e-48 159.6 77.2 7 11 6e-06 0.0057 17.0 0.1 1 23 422 444 422 444 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF529-209 - 563 3.1e-48 159.6 77.2 8 11 3.4e-07 0.00032 21.0 0.4 1 23 450 472 450 472 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF529-209 - 563 3.1e-48 159.6 77.2 9 11 6.5e-09 6.1e-06 26.4 0.9 1 23 478 500 478 500 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF529-209 - 563 3.1e-48 159.6 77.2 10 11 7.3e-08 6.9e-05 23.1 2.9 1 23 506 528 506 528 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF529-209 - 563 3.1e-48 159.6 77.2 11 11 0.0067 6.3 7.5 0.1 1 16 534 549 534 550 0.87 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZNF529-209 - 563 4.1e-24 83.2 73.5 1 11 2.3 2.2e+03 0.0 0.1 1 8 199 206 199 217 0.77 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF529-209 - 563 4.1e-24 83.2 73.5 2 11 1.1e-05 0.01 16.6 2.3 1 23 282 304 282 305 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF529-209 - 563 4.1e-24 83.2 73.5 3 11 0.00076 0.72 10.9 2.0 1 23 310 332 310 333 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF529-209 - 563 4.1e-24 83.2 73.5 4 11 0.00019 0.18 12.7 1.4 1 23 338 360 338 361 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF529-209 - 563 4.1e-24 83.2 73.5 5 11 7.2e-05 0.068 14.0 0.6 1 23 366 388 366 389 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF529-209 - 563 4.1e-24 83.2 73.5 6 11 2.4e-06 0.0023 18.6 0.7 1 23 394 416 394 417 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF529-209 - 563 4.1e-24 83.2 73.5 7 11 0.00028 0.26 12.2 0.2 1 23 422 444 422 445 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF529-209 - 563 4.1e-24 83.2 73.5 8 11 0.00019 0.18 12.7 0.5 1 23 450 472 450 473 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF529-209 - 563 4.1e-24 83.2 73.5 9 11 0.0001 0.095 13.6 1.0 1 23 478 500 478 501 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF529-209 - 563 4.1e-24 83.2 73.5 10 11 0.00073 0.69 10.9 2.4 1 23 506 528 506 529 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF529-209 - 563 4.1e-24 83.2 73.5 11 11 0.019 18 6.5 0.2 1 15 534 548 534 550 0.81 C2H2-type zinc finger KRAB PF01352.27 42 ZNF529-209 - 563 3.6e-22 77.7 2.4 1 1 7.3e-25 6.9e-22 76.8 2.4 1 42 38 79 38 79 0.98 KRAB box Zn-ribbon_8 PF09723.10 40 ZNF529-209 - 563 1.6e-14 53.7 56.7 1 9 0.0083 7.8 6.7 0.6 10 32 181 204 171 209 0.77 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF529-209 - 563 1.6e-14 53.7 56.7 2 9 0.012 11 6.2 1.6 6 35 254 290 253 292 0.88 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF529-209 - 563 1.6e-14 53.7 56.7 3 9 2.6e-05 0.024 14.7 3.0 6 36 282 319 280 321 0.90 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF529-209 - 563 1.6e-14 53.7 56.7 4 9 0.0001 0.098 12.8 2.5 6 34 338 373 336 381 0.92 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF529-209 - 563 1.6e-14 53.7 56.7 5 9 1.2e-05 0.011 15.8 2.3 6 34 394 429 393 432 0.92 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF529-209 - 563 1.6e-14 53.7 56.7 6 9 2.8e-05 0.027 14.6 2.2 6 36 450 487 449 490 0.89 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF529-209 - 563 1.6e-14 53.7 56.7 7 9 4.7e-05 0.044 13.9 3.2 6 35 478 514 477 516 0.92 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF529-209 - 563 1.6e-14 53.7 56.7 8 9 8.4e-06 0.0079 16.3 4.6 6 34 506 541 504 546 0.87 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF529-209 - 563 1.6e-14 53.7 56.7 9 9 0.0021 2 8.6 0.5 6 18 534 546 533 553 0.86 Zinc ribbon domain zf-C2H2_jaz PF12171.8 27 ZNF529-209 - 563 1.2e-12 47.7 46.2 1 10 0.0073 6.9 7.1 1.4 2 22 282 302 281 302 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF529-209 - 563 1.2e-12 47.7 46.2 2 10 0.027 26 5.3 0.9 2 22 310 330 309 330 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF529-209 - 563 1.2e-12 47.7 46.2 3 10 0.0028 2.7 8.4 0.4 2 22 338 358 337 358 0.91 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF529-209 - 563 1.2e-12 47.7 46.2 4 10 0.49 4.6e+02 1.3 0.1 2 11 366 375 365 376 0.86 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF529-209 - 563 1.2e-12 47.7 46.2 5 10 1e-05 0.0094 16.2 0.0 2 22 394 414 393 414 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF529-209 - 563 1.2e-12 47.7 46.2 6 10 0.034 32 5.0 0.0 2 12 422 432 421 442 0.75 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF529-209 - 563 1.2e-12 47.7 46.2 7 10 0.019 17 5.8 0.1 2 21 450 469 449 470 0.83 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF529-209 - 563 1.2e-12 47.7 46.2 8 10 0.00011 0.11 12.9 0.1 2 22 478 498 477 498 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF529-209 - 563 1.2e-12 47.7 46.2 9 10 7.6e-05 0.071 13.4 0.3 2 22 506 526 505 526 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF529-209 - 563 1.2e-12 47.7 46.2 10 10 3.5 3.3e+03 -1.5 0.2 2 7 534 539 533 543 0.87 Zinc-finger double-stranded RNA-binding zf-C2H2_6 PF13912.6 27 ZNF529-209 - 563 3e-12 46.2 72.7 1 11 0.016 15 5.7 0.2 2 11 199 208 198 209 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF529-209 - 563 3e-12 46.2 72.7 2 11 0.0011 1 9.4 1.3 1 12 281 292 281 305 0.91 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF529-209 - 563 3e-12 46.2 72.7 3 11 0.021 20 5.3 0.8 2 12 310 320 309 333 0.81 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF529-209 - 563 3e-12 46.2 72.7 4 11 0.17 1.6e+02 2.5 0.5 2 12 338 348 338 361 0.79 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF529-209 - 563 3e-12 46.2 72.7 5 11 0.0051 4.8 7.3 0.5 2 12 366 376 366 386 0.92 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF529-209 - 563 3e-12 46.2 72.7 6 11 0.00063 0.59 10.2 0.5 2 21 394 413 394 418 0.82 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF529-209 - 563 3e-12 46.2 72.7 7 11 0.00033 0.31 11.1 0.6 2 24 422 444 422 447 0.87 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF529-209 - 563 3e-12 46.2 72.7 8 11 0.00041 0.39 10.8 0.6 2 24 450 472 450 475 0.87 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF529-209 - 563 3e-12 46.2 72.7 9 11 1.7e-05 0.016 15.2 1.1 2 24 478 500 478 503 0.91 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF529-209 - 563 3e-12 46.2 72.7 10 11 0.013 12 6.0 1.1 2 12 506 516 506 528 0.90 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF529-209 - 563 3e-12 46.2 72.7 11 11 0.001 0.94 9.6 1.3 2 12 534 544 534 544 0.95 C2H2-type zinc finger # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF529-209.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF529-209.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF529-209.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF529-209.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF529-209.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:08:18 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZNF530-201 - 599 5.2e-94 304.8 103.5 1 15 1.2 9.7e+02 0.5 0.1 4 19 200 215 198 221 0.79 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF530-201 - 599 5.2e-94 304.8 103.5 2 15 3.6e-06 0.0029 18.0 0.1 11 25 235 249 227 250 0.85 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF530-201 - 599 5.2e-94 304.8 103.5 3 15 0.00015 0.12 12.8 1.8 4 25 256 277 253 278 0.85 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF530-201 - 599 5.2e-94 304.8 103.5 4 15 8.3e-11 6.7e-08 32.6 0.9 1 25 281 305 281 306 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF530-201 - 599 5.2e-94 304.8 103.5 5 15 1.2e-11 9.8e-09 35.3 0.6 3 26 311 334 310 334 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF530-201 - 599 5.2e-94 304.8 103.5 6 15 2e-08 1.7e-05 25.0 2.5 1 26 337 362 337 362 0.97 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF530-201 - 599 5.2e-94 304.8 103.5 7 15 3.6e-10 2.9e-07 30.6 0.8 1 25 365 389 365 390 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF530-201 - 599 5.2e-94 304.8 103.5 8 15 5.6e-10 4.5e-07 30.0 0.9 4 25 396 417 393 418 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF530-201 - 599 5.2e-94 304.8 103.5 9 15 2.7e-11 2.2e-08 34.2 0.1 3 25 423 445 422 446 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF530-201 - 599 5.2e-94 304.8 103.5 10 15 5.1e-08 4.1e-05 23.8 4.4 2 25 450 473 449 474 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF530-201 - 599 5.2e-94 304.8 103.5 11 15 5.6e-11 4.6e-08 33.1 0.1 1 24 477 500 477 502 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF530-201 - 599 5.2e-94 304.8 103.5 12 15 6.4e-10 5.2e-07 29.8 0.7 1 25 505 529 505 530 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF530-201 - 599 5.2e-94 304.8 103.5 13 15 3.1e-11 2.5e-08 34.0 0.4 1 26 533 558 533 558 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF530-201 - 599 5.2e-94 304.8 103.5 14 15 2.4e-10 2e-07 31.1 0.8 1 25 561 585 561 586 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF530-201 - 599 5.2e-94 304.8 103.5 15 15 1.7 1.4e+03 -0.0 0.4 2 9 590 597 589 599 0.87 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZNF530-201 - 599 2.7e-69 225.9 115.4 1 16 1.3 1e+03 0.5 0.1 1 10 91 100 91 102 0.81 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF530-201 - 599 2.7e-69 225.9 115.4 2 16 2 1.6e+03 -0.1 0.0 7 20 174 187 174 189 0.88 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF530-201 - 599 2.7e-69 225.9 115.4 3 16 1.5 1.2e+03 0.2 0.1 8 21 218 231 217 232 0.92 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF530-201 - 599 2.7e-69 225.9 115.4 4 16 7.2e-08 5.8e-05 23.3 1.5 1 23 239 261 239 261 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF530-201 - 599 2.7e-69 225.9 115.4 5 16 2.1e-08 1.7e-05 25.0 4.9 1 23 267 289 267 289 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF530-201 - 599 2.7e-69 225.9 115.4 6 16 3.6e-07 0.00029 21.1 0.3 1 23 295 317 295 317 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF530-201 - 599 2.7e-69 225.9 115.4 7 16 1.5e-07 0.00012 22.3 2.8 1 23 323 345 323 345 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF530-201 - 599 2.7e-69 225.9 115.4 8 16 1.1e-08 9.3e-06 25.8 2.5 1 23 351 373 351 373 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF530-201 - 599 2.7e-69 225.9 115.4 9 16 0.00024 0.2 12.2 3.5 1 23 379 401 379 401 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF530-201 - 599 2.7e-69 225.9 115.4 10 16 7e-08 5.7e-05 23.3 0.2 1 23 407 429 407 429 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF530-201 - 599 2.7e-69 225.9 115.4 11 16 1.3e-08 1e-05 25.7 0.6 1 23 435 457 435 457 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF530-201 - 599 2.7e-69 225.9 115.4 12 16 3.2e-05 0.026 15.0 2.3 1 23 463 485 463 485 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF530-201 - 599 2.7e-69 225.9 115.4 13 16 2e-08 1.7e-05 25.0 1.7 1 23 491 513 491 513 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF530-201 - 599 2.7e-69 225.9 115.4 14 16 3.2e-08 2.6e-05 24.4 0.3 1 23 519 541 519 541 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF530-201 - 599 2.7e-69 225.9 115.4 15 16 1.9e-07 0.00015 22.0 2.6 1 23 547 569 547 569 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF530-201 - 599 2.7e-69 225.9 115.4 16 16 3.8e-09 3.1e-06 27.3 0.6 1 23 575 597 575 597 0.98 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZNF530-201 - 599 1.8e-48 159.0 109.3 1 15 0.72 5.8e+02 1.8 0.0 1 13 91 103 91 111 0.75 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF530-201 - 599 1.8e-48 159.0 109.3 2 15 6.6 5.3e+03 -1.2 0.0 7 21 174 188 173 190 0.81 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF530-201 - 599 1.8e-48 159.0 109.3 3 15 2.7e-07 0.00022 21.8 1.0 1 23 239 261 239 262 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF530-201 - 599 1.8e-48 159.0 109.3 4 15 2.3e-05 0.019 15.8 4.1 1 23 267 289 267 290 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF530-201 - 599 1.8e-48 159.0 109.3 5 15 0.00026 0.21 12.5 0.4 3 23 297 317 295 318 0.89 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF530-201 - 599 1.8e-48 159.0 109.3 6 15 1.8e-05 0.015 16.1 2.2 1 23 323 345 323 346 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF530-201 - 599 1.8e-48 159.0 109.3 7 15 4.9e-06 0.004 17.9 2.5 1 23 351 373 351 374 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF530-201 - 599 1.8e-48 159.0 109.3 8 15 0.00024 0.2 12.6 3.2 1 23 379 401 379 402 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF530-201 - 599 1.8e-48 159.0 109.3 9 15 5.6e-05 0.046 14.6 0.4 1 23 407 429 407 430 0.90 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF530-201 - 599 1.8e-48 159.0 109.3 10 15 5.8e-07 0.00047 20.8 0.7 1 23 435 457 435 458 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF530-201 - 599 1.8e-48 159.0 109.3 11 15 5.2e-06 0.0043 17.8 2.3 1 23 463 485 463 486 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF530-201 - 599 1.8e-48 159.0 109.3 12 15 8.7e-06 0.0071 17.1 1.4 1 23 491 513 491 514 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF530-201 - 599 1.8e-48 159.0 109.3 13 15 3e-06 0.0025 18.5 0.4 1 23 519 541 519 542 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF530-201 - 599 1.8e-48 159.0 109.3 14 15 9.2e-06 0.0075 17.0 2.0 1 23 547 569 547 570 0.89 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF530-201 - 599 1.8e-48 159.0 109.3 15 15 5.1e-07 0.00041 20.9 0.6 1 23 575 597 575 598 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF530-201 - 599 1.3e-29 101.6 109.5 1 13 0.0002 0.16 12.0 1.0 2 12 239 249 239 261 0.91 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF530-201 - 599 1.3e-29 101.6 109.5 2 13 4.4e-05 0.036 14.1 3.7 2 22 267 287 266 291 0.84 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF530-201 - 599 1.3e-29 101.6 109.5 3 13 0.00013 0.1 12.6 0.3 2 24 295 317 295 320 0.85 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF530-201 - 599 1.3e-29 101.6 109.5 4 13 2e-05 0.016 15.2 4.0 2 24 323 345 323 348 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF530-201 - 599 1.3e-29 101.6 109.5 5 13 4.5e-05 0.037 14.0 1.9 2 20 351 369 351 374 0.88 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF530-201 - 599 1.3e-29 101.6 109.5 6 13 0.00096 0.78 9.8 0.8 2 12 379 389 379 389 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF530-201 - 599 1.3e-29 101.6 109.5 7 13 0.00018 0.15 12.1 0.5 2 20 407 425 407 431 0.78 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF530-201 - 599 1.3e-29 101.6 109.5 8 13 4e-06 0.0032 17.4 1.9 2 25 435 458 435 460 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF530-201 - 599 1.3e-29 101.6 109.5 9 13 0.00064 0.52 10.4 2.1 2 18 463 479 463 486 0.79 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF530-201 - 599 1.3e-29 101.6 109.5 10 13 0.00021 0.17 11.9 0.3 2 11 491 500 491 511 0.92 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF530-201 - 599 1.3e-29 101.6 109.5 11 13 2.9e-05 0.024 14.6 0.7 2 24 519 541 519 544 0.92 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF530-201 - 599 1.3e-29 101.6 109.5 12 13 0.00014 0.12 12.5 1.9 2 24 547 569 547 572 0.92 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF530-201 - 599 1.3e-29 101.6 109.5 13 13 6.9e-05 0.056 13.5 0.8 2 13 575 586 575 597 0.76 C2H2-type zinc finger KRAB PF01352.27 42 ZNF530-201 - 599 4e-22 77.6 1.3 1 1 9.5e-25 7.7e-22 76.7 1.3 2 42 14 54 13 54 0.98 KRAB box zf-C2H2_jaz PF12171.8 27 ZNF530-201 - 599 7.8e-14 51.5 49.8 1 14 3.3 2.7e+03 -1.2 0.1 9 22 218 231 217 231 0.89 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF530-201 - 599 7.8e-14 51.5 49.8 2 14 0.016 13 6.2 0.1 2 22 239 259 238 259 0.89 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF530-201 - 599 7.8e-14 51.5 49.8 3 14 0.0025 2 8.8 0.6 2 22 267 287 266 287 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF530-201 - 599 7.8e-14 51.5 49.8 4 14 0.017 14 6.1 0.0 2 22 295 315 294 315 0.91 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF530-201 - 599 7.8e-14 51.5 49.8 5 14 0.02 16 5.9 0.2 2 20 323 341 322 343 0.83 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF530-201 - 599 7.8e-14 51.5 49.8 6 14 0.022 18 5.8 0.2 2 20 351 369 350 371 0.82 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF530-201 - 599 7.8e-14 51.5 49.8 7 14 0.48 4e+02 1.5 0.1 2 12 379 389 378 389 0.88 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF530-201 - 599 7.8e-14 51.5 49.8 8 14 0.023 19 5.7 0.0 2 22 407 427 406 427 0.91 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF530-201 - 599 7.8e-14 51.5 49.8 9 14 0.16 1.3e+02 3.0 0.0 2 12 435 445 434 450 0.89 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF530-201 - 599 7.8e-14 51.5 49.8 10 14 0.038 31 5.0 0.8 2 20 463 481 462 483 0.78 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF530-201 - 599 7.8e-14 51.5 49.8 11 14 0.004 3.3 8.1 0.1 2 21 491 510 490 511 0.90 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF530-201 - 599 7.8e-14 51.5 49.8 12 14 0.0024 1.9 8.9 0.0 2 21 519 538 518 539 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF530-201 - 599 7.8e-14 51.5 49.8 13 14 0.0056 4.6 7.6 0.3 2 21 547 566 546 567 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF530-201 - 599 7.8e-14 51.5 49.8 14 14 0.026 21 5.5 0.0 2 21 575 594 574 595 0.85 Zinc-finger double-stranded RNA-binding zf_UBZ PF18439.1 32 ZNF530-201 - 599 1.1e-13 50.5 67.3 1 14 7.1 5.8e+03 -3.0 0.3 2 8 90 96 89 97 0.82 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF530-201 - 599 1.1e-13 50.5 67.3 2 14 0.00098 0.8 9.4 0.1 3 15 239 251 237 257 0.87 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF530-201 - 599 1.1e-13 50.5 67.3 3 14 0.0035 2.8 7.6 1.2 2 20 266 285 265 286 0.81 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF530-201 - 599 1.1e-13 50.5 67.3 4 14 0.0064 5.2 6.8 0.1 3 13 295 305 293 314 0.83 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF530-201 - 599 1.1e-13 50.5 67.3 5 14 0.0015 1.2 8.8 0.1 3 15 323 335 321 341 0.88 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF530-201 - 599 1.1e-13 50.5 67.3 6 14 0.0017 1.4 8.6 0.1 3 15 351 363 349 366 0.88 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF530-201 - 599 1.1e-13 50.5 67.3 7 14 0.0087 7.1 6.3 1.1 3 15 379 391 377 401 0.80 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF530-201 - 599 1.1e-13 50.5 67.3 8 14 0.0032 2.6 7.7 0.1 3 12 407 416 405 425 0.89 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF530-201 - 599 1.1e-13 50.5 67.3 9 14 0.003 2.5 7.8 0.1 3 15 435 447 433 449 0.88 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF530-201 - 599 1.1e-13 50.5 67.3 10 14 0.024 20 4.9 1.8 3 20 463 481 461 482 0.80 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF530-201 - 599 1.1e-13 50.5 67.3 11 14 0.18 1.5e+02 2.1 0.1 3 12 491 500 489 506 0.88 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF530-201 - 599 1.1e-13 50.5 67.3 12 14 0.00068 0.56 9.9 0.1 3 20 519 537 517 538 0.90 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF530-201 - 599 1.1e-13 50.5 67.3 13 14 0.043 35 4.1 0.2 3 13 547 557 545 566 0.83 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF530-201 - 599 1.1e-13 50.5 67.3 14 14 0.0012 0.98 9.1 0.1 3 15 575 587 573 594 0.85 Ubiquitin-Binding Zinc Finger Zn-ribbon_8 PF09723.10 40 ZNF530-201 - 599 1.6e-09 37.7 78.4 1 12 6.6e-05 0.054 13.6 3.9 6 38 239 278 238 280 0.83 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF530-201 - 599 1.6e-09 37.7 78.4 2 12 0.001 0.83 9.8 4.9 7 39 268 307 266 308 0.90 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF530-201 - 599 1.6e-09 37.7 78.4 3 12 0.0016 1.3 9.2 5.0 6 34 295 330 294 333 0.90 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF530-201 - 599 1.6e-09 37.7 78.4 4 12 0.0032 2.6 8.2 6.7 6 34 323 358 322 361 0.86 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF530-201 - 599 1.6e-09 37.7 78.4 5 12 0.012 9.6 6.4 0.8 6 16 351 361 350 368 0.88 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF530-201 - 599 1.6e-09 37.7 78.4 6 12 0.00015 0.12 12.5 4.0 6 34 379 414 378 420 0.92 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF530-201 - 599 1.6e-09 37.7 78.4 7 12 0.0058 4.8 7.4 6.7 6 34 435 470 434 472 0.83 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF530-201 - 599 1.6e-09 37.7 78.4 8 12 0.019 16 5.7 6.9 6 35 463 499 462 504 0.88 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF530-201 - 599 1.6e-09 37.7 78.4 9 12 0.0045 3.7 7.8 4.4 6 34 491 526 490 530 0.88 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF530-201 - 599 1.6e-09 37.7 78.4 10 12 0.0027 2.2 8.5 6.4 6 38 519 558 518 560 0.83 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF530-201 - 599 1.6e-09 37.7 78.4 11 12 0.002 1.6 8.9 6.7 6 34 547 582 546 586 0.77 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF530-201 - 599 1.6e-09 37.7 78.4 12 12 0.0097 7.9 6.7 0.7 6 16 575 585 574 593 0.87 Zinc ribbon domain zinc_ribbon_15 PF17032.5 86 ZNF530-201 - 599 1.7e-07 31.9 52.9 1 10 5.4e-05 0.044 14.5 1.2 22 78 223 279 207 285 0.84 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF530-201 - 599 1.7e-07 31.9 52.9 2 10 0.0011 0.89 10.3 0.6 32 75 261 304 252 310 0.84 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF530-201 - 599 1.7e-07 31.9 52.9 3 10 0.0066 5.4 7.8 1.1 34 78 291 335 284 341 0.83 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF530-201 - 599 1.7e-07 31.9 52.9 4 10 0.00063 0.51 11.1 4.9 26 78 311 363 297 369 0.87 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF530-201 - 599 1.7e-07 31.9 52.9 5 10 0.0021 1.7 9.4 1.6 37 77 350 390 343 394 0.88 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF530-201 - 599 1.7e-07 31.9 52.9 6 10 0.03 24 5.8 0.8 30 75 371 416 365 425 0.75 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF530-201 - 599 1.7e-07 31.9 52.9 7 10 0.0015 1.2 9.9 4.9 21 78 390 447 380 450 0.87 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF530-201 - 599 1.7e-07 31.9 52.9 8 10 0.0012 0.97 10.2 3.6 27 77 424 474 419 481 0.86 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF530-201 - 599 1.7e-07 31.9 52.9 9 10 0.0044 3.6 8.4 1.3 33 78 486 531 478 534 0.84 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF530-201 - 599 1.7e-07 31.9 52.9 10 10 0.0025 2.1 9.2 1.7 33 77 542 586 535 589 0.84 zinc-ribbon family XPA_N PF01286.18 32 ZNF530-201 - 599 2e-07 30.9 64.6 1 13 0.0051 4.2 7.5 0.7 3 14 240 251 238 254 0.92 XPA protein N-terminal XPA_N PF01286.18 32 ZNF530-201 - 599 2e-07 30.9 64.6 2 13 0.035 28 4.9 0.5 3 12 268 277 266 279 0.88 XPA protein N-terminal XPA_N PF01286.18 32 ZNF530-201 - 599 2e-07 30.9 64.6 3 13 0.028 23 5.2 0.1 3 12 296 305 294 313 0.83 XPA protein N-terminal XPA_N PF01286.18 32 ZNF530-201 - 599 2e-07 30.9 64.6 4 13 0.0074 6 7.0 0.2 3 14 324 335 322 339 0.91 XPA protein N-terminal XPA_N PF01286.18 32 ZNF530-201 - 599 2e-07 30.9 64.6 5 13 0.0051 4.2 7.5 0.1 3 14 352 363 350 372 0.86 XPA protein N-terminal XPA_N PF01286.18 32 ZNF530-201 - 599 2e-07 30.9 64.6 6 13 0.028 23 5.2 0.4 3 12 380 389 378 396 0.87 XPA protein N-terminal XPA_N PF01286.18 32 ZNF530-201 - 599 2e-07 30.9 64.6 7 13 0.019 16 5.7 0.0 3 13 408 418 406 425 0.81 XPA protein N-terminal XPA_N PF01286.18 32 ZNF530-201 - 599 2e-07 30.9 64.6 8 13 0.015 12 6.0 0.2 3 14 436 447 434 452 0.91 XPA protein N-terminal XPA_N PF01286.18 32 ZNF530-201 - 599 2e-07 30.9 64.6 9 13 0.5 4.1e+02 1.1 2.8 3 11 464 472 462 474 0.89 XPA protein N-terminal XPA_N PF01286.18 32 ZNF530-201 - 599 2e-07 30.9 64.6 10 13 0.74 6e+02 0.6 0.1 3 11 492 500 490 502 0.67 XPA protein N-terminal XPA_N PF01286.18 32 ZNF530-201 - 599 2e-07 30.9 64.6 11 13 0.018 15 5.8 0.2 3 14 520 531 518 537 0.83 XPA protein N-terminal XPA_N PF01286.18 32 ZNF530-201 - 599 2e-07 30.9 64.6 12 13 0.018 15 5.8 0.2 3 12 548 557 546 558 0.88 XPA protein N-terminal XPA_N PF01286.18 32 ZNF530-201 - 599 2e-07 30.9 64.6 13 13 0.004 3.2 7.9 0.2 3 14 576 587 574 593 0.90 XPA protein N-terminal # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF530-201.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF530-201.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF530-201.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF530-201.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF530-201.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:08:18 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF530-202.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF530-202.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF530-202.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF530-202.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF530-202.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:08:19 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF530-203.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF530-203.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF530-203.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF530-203.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF530-203.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:08:19 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZNF530-204 - 494 3.9e-97 314.7 97.5 1 15 1.2 7.7e+02 0.8 0.1 4 19 95 110 93 116 0.79 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF530-204 - 494 3.9e-97 314.7 97.5 2 15 3.5e-06 0.0023 18.3 0.1 11 25 130 144 122 145 0.85 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF530-204 - 494 3.9e-97 314.7 97.5 3 15 0.00014 0.096 13.2 1.8 4 25 151 172 148 173 0.85 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF530-204 - 494 3.9e-97 314.7 97.5 4 15 8.1e-11 5.4e-08 32.9 0.8 1 25 176 200 176 201 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF530-204 - 494 3.9e-97 314.7 97.5 5 15 1.2e-11 7.8e-09 35.6 0.6 3 26 206 229 205 229 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF530-204 - 494 3.9e-97 314.7 97.5 6 15 2e-08 1.3e-05 25.4 2.5 1 26 232 257 232 257 0.97 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF530-204 - 494 3.9e-97 314.7 97.5 7 15 3.5e-10 2.3e-07 30.9 0.8 1 25 260 284 260 285 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF530-204 - 494 3.9e-97 314.7 97.5 8 15 5.4e-10 3.6e-07 30.3 0.9 4 25 291 312 288 313 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF530-204 - 494 3.9e-97 314.7 97.5 9 15 2.6e-11 1.7e-08 34.5 0.1 3 25 318 340 317 341 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF530-204 - 494 3.9e-97 314.7 97.5 10 15 4.9e-08 3.3e-05 24.1 4.4 2 25 345 368 344 369 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF530-204 - 494 3.9e-97 314.7 97.5 11 15 5.5e-11 3.6e-08 33.5 0.1 1 24 372 395 372 397 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF530-204 - 494 3.9e-97 314.7 97.5 12 15 6.2e-10 4.1e-07 30.1 0.7 1 25 400 424 400 425 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF530-204 - 494 3.9e-97 314.7 97.5 13 15 3e-11 2e-08 34.3 0.4 1 26 428 453 428 453 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF530-204 - 494 3.9e-97 314.7 97.5 14 15 2.3e-10 1.6e-07 31.5 0.8 1 25 456 480 456 481 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF530-204 - 494 3.9e-97 314.7 97.5 15 15 1.7 1.2e+03 0.3 0.4 2 9 485 492 484 494 0.87 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZNF530-204 - 494 1.6e-69 226.7 116.7 1 15 2 1.3e+03 0.2 0.0 7 20 69 82 69 84 0.88 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF530-204 - 494 1.6e-69 226.7 116.7 2 15 1.5 9.9e+02 0.5 0.1 8 21 113 126 112 127 0.92 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF530-204 - 494 1.6e-69 226.7 116.7 3 15 7e-08 4.6e-05 23.6 1.5 1 23 134 156 134 156 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF530-204 - 494 1.6e-69 226.7 116.7 4 15 2e-08 1.3e-05 25.3 4.9 1 23 162 184 162 184 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF530-204 - 494 1.6e-69 226.7 116.7 5 15 3.5e-07 0.00023 21.4 0.3 1 23 190 212 190 212 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF530-204 - 494 1.6e-69 226.7 116.7 6 15 1.4e-07 9.6e-05 22.6 2.8 1 23 218 240 218 240 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF530-204 - 494 1.6e-69 226.7 116.7 7 15 1.1e-08 7.4e-06 26.1 2.5 1 23 246 268 246 268 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF530-204 - 494 1.6e-69 226.7 116.7 8 15 0.00024 0.16 12.5 3.5 1 23 274 296 274 296 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF530-204 - 494 1.6e-69 226.7 116.7 9 15 6.9e-08 4.6e-05 23.7 0.2 1 23 302 324 302 324 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF530-204 - 494 1.6e-69 226.7 116.7 10 15 1.2e-08 8.2e-06 26.0 0.6 1 23 330 352 330 352 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF530-204 - 494 1.6e-69 226.7 116.7 11 15 3.2e-05 0.021 15.3 2.3 1 23 358 380 358 380 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF530-204 - 494 1.6e-69 226.7 116.7 12 15 2e-08 1.3e-05 25.3 1.7 1 23 386 408 386 408 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF530-204 - 494 1.6e-69 226.7 116.7 13 15 3.1e-08 2.1e-05 24.7 0.3 1 23 414 436 414 436 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF530-204 - 494 1.6e-69 226.7 116.7 14 15 1.8e-07 0.00012 22.3 2.6 1 23 442 464 442 464 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF530-204 - 494 1.6e-69 226.7 116.7 15 15 3.7e-09 2.5e-06 27.6 0.6 1 23 470 492 470 492 0.98 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZNF530-204 - 494 2.5e-49 161.6 107.4 1 14 6.4 4.3e+03 -0.9 0.0 7 21 69 83 68 85 0.81 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF530-204 - 494 2.5e-49 161.6 107.4 2 14 2.6e-07 0.00017 22.1 1.0 1 23 134 156 134 157 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF530-204 - 494 2.5e-49 161.6 107.4 3 14 2.3e-05 0.015 16.1 4.1 1 23 162 184 162 185 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF530-204 - 494 2.5e-49 161.6 107.4 4 14 0.00025 0.17 12.8 0.4 3 23 192 212 190 213 0.89 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF530-204 - 494 2.5e-49 161.6 107.4 5 14 1.8e-05 0.012 16.4 2.2 1 23 218 240 218 241 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF530-204 - 494 2.5e-49 161.6 107.4 6 14 4.8e-06 0.0032 18.2 2.5 1 23 246 268 246 269 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF530-204 - 494 2.5e-49 161.6 107.4 7 14 0.00024 0.16 12.9 3.2 1 23 274 296 274 297 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF530-204 - 494 2.5e-49 161.6 107.4 8 14 5.4e-05 0.036 14.9 0.4 1 23 302 324 302 325 0.90 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF530-204 - 494 2.5e-49 161.6 107.4 9 14 5.6e-07 0.00037 21.1 0.7 1 23 330 352 330 353 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF530-204 - 494 2.5e-49 161.6 107.4 10 14 5.1e-06 0.0034 18.1 2.3 1 23 358 380 358 381 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF530-204 - 494 2.5e-49 161.6 107.4 11 14 8.5e-06 0.0056 17.4 1.4 1 23 386 408 386 409 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF530-204 - 494 2.5e-49 161.6 107.4 12 14 3e-06 0.002 18.8 0.4 1 23 414 436 414 437 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF530-204 - 494 2.5e-49 161.6 107.4 13 14 8.9e-06 0.0059 17.3 2.0 1 23 442 464 442 465 0.89 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF530-204 - 494 2.5e-49 161.6 107.4 14 14 4.9e-07 0.00033 21.2 0.6 1 23 470 492 470 493 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF530-204 - 494 5.9e-33 112.2 102.3 1 13 0.0002 0.13 12.3 1.0 2 12 134 144 134 156 0.91 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF530-204 - 494 5.9e-33 112.2 102.3 2 13 4.3e-05 0.029 14.4 3.7 2 22 162 182 161 186 0.84 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF530-204 - 494 5.9e-33 112.2 102.3 3 13 0.00012 0.083 12.9 0.3 2 24 190 212 190 215 0.86 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF530-204 - 494 5.9e-33 112.2 102.3 4 13 2e-05 0.013 15.5 4.0 2 24 218 240 218 243 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF530-204 - 494 5.9e-33 112.2 102.3 5 13 4.5e-05 0.03 14.3 1.9 2 20 246 264 246 269 0.88 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF530-204 - 494 5.9e-33 112.2 102.3 6 13 0.00095 0.63 10.1 0.8 2 12 274 284 274 284 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF530-204 - 494 5.9e-33 112.2 102.3 7 13 0.00018 0.12 12.4 0.5 2 20 302 320 302 326 0.78 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF530-204 - 494 5.9e-33 112.2 102.3 8 13 3.9e-06 0.0026 17.7 1.9 2 25 330 353 330 355 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF530-204 - 494 5.9e-33 112.2 102.3 9 13 0.00063 0.42 10.7 2.1 2 19 358 375 358 381 0.79 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF530-204 - 494 5.9e-33 112.2 102.3 10 13 0.0002 0.13 12.2 0.3 2 11 386 395 386 406 0.92 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF530-204 - 494 5.9e-33 112.2 102.3 11 13 2.9e-05 0.019 15.0 0.7 2 24 414 436 414 439 0.92 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF530-204 - 494 5.9e-33 112.2 102.3 12 13 0.00014 0.092 12.8 1.9 2 24 442 464 442 467 0.92 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF530-204 - 494 5.9e-33 112.2 102.3 13 13 6.8e-05 0.045 13.8 0.8 2 13 470 481 470 492 0.75 C2H2-type zinc finger zf_UBZ PF18439.1 32 ZNF530-204 - 494 2e-16 59.3 61.7 1 13 0.00096 0.64 9.7 0.1 3 15 134 146 132 152 0.87 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF530-204 - 494 2e-16 59.3 61.7 2 13 0.0034 2.3 7.9 1.2 2 20 161 180 160 181 0.81 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF530-204 - 494 2e-16 59.3 61.7 3 13 0.0063 4.2 7.1 0.1 3 13 190 200 188 209 0.83 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF530-204 - 494 2e-16 59.3 61.7 4 13 0.0015 0.98 9.1 0.1 3 15 218 230 216 236 0.88 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF530-204 - 494 2e-16 59.3 61.7 5 13 0.0016 1.1 8.9 0.1 3 15 246 258 244 261 0.88 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF530-204 - 494 2e-16 59.3 61.7 6 13 0.0086 5.7 6.6 1.1 3 15 274 286 272 296 0.80 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF530-204 - 494 2e-16 59.3 61.7 7 13 0.0029 1.9 8.1 0.1 3 12 302 311 300 321 0.86 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF530-204 - 494 2e-16 59.3 61.7 8 13 0.003 2 8.1 0.1 3 15 330 342 328 344 0.88 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF530-204 - 494 2e-16 59.3 61.7 9 13 0.024 16 5.2 1.8 3 20 358 376 356 377 0.80 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF530-204 - 494 2e-16 59.3 61.7 10 13 0.18 1.2e+02 2.4 0.1 3 12 386 395 384 401 0.88 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF530-204 - 494 2e-16 59.3 61.7 11 13 0.00067 0.44 10.2 0.1 3 20 414 432 412 433 0.90 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF530-204 - 494 2e-16 59.3 61.7 12 13 0.042 28 4.4 0.2 3 13 442 452 440 461 0.83 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF530-204 - 494 2e-16 59.3 61.7 13 13 0.0012 0.79 9.4 0.1 3 15 470 482 468 489 0.85 Ubiquitin-Binding Zinc Finger zf-C2H2_jaz PF12171.8 27 ZNF530-204 - 494 5e-15 55.3 49.8 1 14 3.2 2.1e+03 -0.9 0.1 9 22 113 126 112 126 0.89 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF530-204 - 494 5e-15 55.3 49.8 2 14 0.016 11 6.5 0.1 2 22 134 154 133 154 0.89 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF530-204 - 494 5e-15 55.3 49.8 3 14 0.0025 1.6 9.1 0.6 2 22 162 182 161 182 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF530-204 - 494 5e-15 55.3 49.8 4 14 0.017 11 6.4 0.0 2 22 190 210 189 210 0.91 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF530-204 - 494 5e-15 55.3 49.8 5 14 0.02 13 6.2 0.2 2 20 218 236 217 238 0.83 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF530-204 - 494 5e-15 55.3 49.8 6 14 0.021 14 6.1 0.2 2 20 246 264 245 266 0.82 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF530-204 - 494 5e-15 55.3 49.8 7 14 0.48 3.2e+02 1.8 0.1 2 12 274 284 273 284 0.88 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF530-204 - 494 5e-15 55.3 49.8 8 14 0.022 15 6.0 0.0 2 22 302 322 301 322 0.91 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF530-204 - 494 5e-15 55.3 49.8 9 14 0.16 1.1e+02 3.3 0.0 2 12 330 340 329 345 0.89 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF530-204 - 494 5e-15 55.3 49.8 10 14 0.037 25 5.3 0.8 2 20 358 376 357 378 0.78 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF530-204 - 494 5e-15 55.3 49.8 11 14 0.0039 2.6 8.4 0.1 2 21 386 405 385 406 0.90 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF530-204 - 494 5e-15 55.3 49.8 12 14 0.0023 1.5 9.2 0.0 2 21 414 433 413 434 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF530-204 - 494 5e-15 55.3 49.8 13 14 0.0055 3.7 8.0 0.3 2 21 442 461 441 462 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF530-204 - 494 5e-15 55.3 49.8 14 14 0.026 17 5.8 0.0 2 21 470 489 469 490 0.85 Zinc-finger double-stranded RNA-binding Zn-ribbon_8 PF09723.10 40 ZNF530-204 - 494 3.5e-10 39.8 78.7 1 12 6.9e-05 0.046 13.8 4.0 6 38 134 173 133 175 0.83 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF530-204 - 494 3.5e-10 39.8 78.7 2 12 0.00096 0.64 10.2 4.9 7 39 163 202 161 203 0.90 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF530-204 - 494 3.5e-10 39.8 78.7 3 12 0.0015 1 9.6 5.0 6 34 190 225 189 228 0.90 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF530-204 - 494 3.5e-10 39.8 78.7 4 12 0.0026 1.7 8.8 6.5 6 34 218 253 217 256 0.86 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF530-204 - 494 3.5e-10 39.8 78.7 5 12 0.011 7.6 6.7 0.8 6 16 246 256 245 263 0.88 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF530-204 - 494 3.5e-10 39.8 78.7 6 12 0.00014 0.093 12.9 4.0 6 34 274 309 273 315 0.92 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF530-204 - 494 3.5e-10 39.8 78.7 7 12 0.005 3.3 7.9 6.7 6 34 330 365 329 368 0.83 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF530-204 - 494 3.5e-10 39.8 78.7 8 12 0.019 13 6.0 7.0 6 35 358 394 355 399 0.88 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF530-204 - 494 3.5e-10 39.8 78.7 9 12 0.0043 2.9 8.1 4.5 6 34 386 421 385 426 0.88 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF530-204 - 494 3.5e-10 39.8 78.7 10 12 0.0032 2.2 8.5 6.6 6 38 414 453 413 454 0.83 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF530-204 - 494 3.5e-10 39.8 78.7 11 12 0.002 1.3 9.1 6.8 6 34 442 477 441 481 0.77 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF530-204 - 494 3.5e-10 39.8 78.7 12 12 0.0091 6 7.1 0.6 6 16 470 480 469 488 0.87 Zinc ribbon domain zinc_ribbon_15 PF17032.5 86 ZNF530-204 - 494 4.6e-09 36.9 49.7 1 10 5.1e-05 0.034 14.9 1.2 22 78 118 174 102 180 0.84 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF530-204 - 494 4.6e-09 36.9 49.7 2 10 0.0016 1.1 10.1 1.1 33 75 157 199 149 204 0.84 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF530-204 - 494 4.6e-09 36.9 49.7 3 10 0.0057 3.8 8.3 1.1 33 79 185 231 176 236 0.84 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF530-204 - 494 4.6e-09 36.9 49.7 4 10 0.00055 0.37 11.6 4.8 26 78 206 258 191 262 0.86 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF530-204 - 494 4.6e-09 36.9 49.7 5 10 0.0025 1.6 9.5 1.9 37 77 245 285 237 288 0.88 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF530-204 - 494 4.6e-09 36.9 49.7 6 10 0.03 20 6.0 0.7 30 75 266 311 262 317 0.75 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF530-204 - 494 4.6e-09 36.9 49.7 7 10 0.00014 0.093 13.5 1.1 21 77 285 341 282 344 0.88 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF530-204 - 494 4.6e-09 36.9 49.7 8 10 0.001 0.68 10.7 3.2 29 77 321 369 316 374 0.86 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF530-204 - 494 4.6e-09 36.9 49.7 9 10 0.004 2.6 8.8 1.3 33 78 381 426 373 429 0.84 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF530-204 - 494 4.6e-09 36.9 49.7 10 10 0.0021 1.4 9.7 1.6 32 77 436 481 429 484 0.84 zinc-ribbon family XPA_N PF01286.18 32 ZNF530-204 - 494 1.4e-08 34.6 64.6 1 13 0.0051 3.4 7.8 0.7 3 14 135 146 133 149 0.92 XPA protein N-terminal XPA_N PF01286.18 32 ZNF530-204 - 494 1.4e-08 34.6 64.6 2 13 0.034 23 5.1 0.5 3 12 163 172 161 174 0.88 XPA protein N-terminal XPA_N PF01286.18 32 ZNF530-204 - 494 1.4e-08 34.6 64.6 3 13 0.027 18 5.5 0.1 3 12 191 200 189 208 0.83 XPA protein N-terminal XPA_N PF01286.18 32 ZNF530-204 - 494 1.4e-08 34.6 64.6 4 13 0.0073 4.9 7.3 0.2 3 14 219 230 217 234 0.91 XPA protein N-terminal XPA_N PF01286.18 32 ZNF530-204 - 494 1.4e-08 34.6 64.6 5 13 0.005 3.3 7.8 0.1 3 14 247 258 245 267 0.86 XPA protein N-terminal XPA_N PF01286.18 32 ZNF530-204 - 494 1.4e-08 34.6 64.6 6 13 0.027 18 5.5 0.4 3 12 275 284 273 291 0.87 XPA protein N-terminal XPA_N PF01286.18 32 ZNF530-204 - 494 1.4e-08 34.6 64.6 7 13 0.019 13 6.0 0.0 3 13 303 313 301 320 0.81 XPA protein N-terminal XPA_N PF01286.18 32 ZNF530-204 - 494 1.4e-08 34.6 64.6 8 13 0.015 9.8 6.3 0.2 3 14 331 342 329 347 0.91 XPA protein N-terminal XPA_N PF01286.18 32 ZNF530-204 - 494 1.4e-08 34.6 64.6 9 13 0.5 3.3e+02 1.4 2.8 3 11 359 367 357 369 0.89 XPA protein N-terminal XPA_N PF01286.18 32 ZNF530-204 - 494 1.4e-08 34.6 64.6 10 13 0.74 4.9e+02 0.9 0.1 3 11 387 395 385 397 0.67 XPA protein N-terminal XPA_N PF01286.18 32 ZNF530-204 - 494 1.4e-08 34.6 64.6 11 13 0.018 12 6.1 0.2 3 14 415 426 413 432 0.83 XPA protein N-terminal XPA_N PF01286.18 32 ZNF530-204 - 494 1.4e-08 34.6 64.6 12 13 0.018 12 6.0 0.2 3 12 443 452 441 453 0.88 XPA protein N-terminal XPA_N PF01286.18 32 ZNF530-204 - 494 1.4e-08 34.6 64.6 13 13 0.0039 2.6 8.2 0.2 3 14 471 482 469 488 0.90 XPA protein N-terminal YhfH PF14149.6 37 ZNF530-204 - 494 2e-07 30.9 43.5 1 13 0.024 16 5.6 0.1 15 25 135 145 133 147 0.84 YhfH-like protein YhfH PF14149.6 37 ZNF530-204 - 494 2e-07 30.9 43.5 2 13 0.037 24 5.0 0.1 15 23 163 171 158 175 0.84 YhfH-like protein YhfH PF14149.6 37 ZNF530-204 - 494 2e-07 30.9 43.5 3 13 0.059 39 4.3 0.0 16 25 192 201 189 204 0.84 YhfH-like protein YhfH PF14149.6 37 ZNF530-204 - 494 2e-07 30.9 43.5 4 13 0.032 21 5.2 0.1 15 25 219 229 217 237 0.79 YhfH-like protein YhfH PF14149.6 37 ZNF530-204 - 494 2e-07 30.9 43.5 5 13 0.051 34 4.5 0.1 15 23 247 255 243 259 0.87 YhfH-like protein YhfH PF14149.6 37 ZNF530-204 - 494 2e-07 30.9 43.5 6 13 0.078 51 3.9 0.1 15 23 275 283 273 284 0.86 YhfH-like protein YhfH PF14149.6 37 ZNF530-204 - 494 2e-07 30.9 43.5 7 13 0.057 38 4.4 0.1 15 25 303 313 301 316 0.82 YhfH-like protein YhfH PF14149.6 37 ZNF530-204 - 494 2e-07 30.9 43.5 8 13 0.028 19 5.3 0.1 15 25 331 341 329 343 0.85 YhfH-like protein YhfH PF14149.6 37 ZNF530-204 - 494 2e-07 30.9 43.5 9 13 6.3 4.2e+03 -2.2 0.3 15 19 359 363 354 367 0.74 YhfH-like protein YhfH PF14149.6 37 ZNF530-204 - 494 2e-07 30.9 43.5 10 13 0.27 1.8e+02 2.2 0.1 15 23 387 395 385 400 0.82 YhfH-like protein YhfH PF14149.6 37 ZNF530-204 - 494 2e-07 30.9 43.5 11 13 0.09 60 3.7 0.1 15 22 415 422 412 427 0.84 YhfH-like protein YhfH PF14149.6 37 ZNF530-204 - 494 2e-07 30.9 43.5 12 13 0.087 58 3.8 0.1 15 23 443 451 441 455 0.85 YhfH-like protein YhfH PF14149.6 37 ZNF530-204 - 494 2e-07 30.9 43.5 13 13 0.03 20 5.3 0.1 15 25 471 481 469 483 0.85 YhfH-like protein TFIIS_C PF01096.18 39 ZNF530-204 - 494 4.5e-07 29.6 51.9 1 13 0.006 4 7.4 0.1 17 38 123 143 116 144 0.74 Transcription factor S-II (TFIIS) TFIIS_C PF01096.18 39 ZNF530-204 - 494 4.5e-07 29.6 51.9 2 13 0.023 15 5.5 0.1 24 38 157 171 153 172 0.86 Transcription factor S-II (TFIIS) TFIIS_C PF01096.18 39 ZNF530-204 - 494 4.5e-07 29.6 51.9 3 13 0.048 32 4.5 0.1 29 39 190 200 187 200 0.90 Transcription factor S-II (TFIIS) TFIIS_C PF01096.18 39 ZNF530-204 - 494 4.5e-07 29.6 51.9 4 13 0.059 39 4.2 0.2 29 38 218 227 215 228 0.87 Transcription factor S-II (TFIIS) TFIIS_C PF01096.18 39 ZNF530-204 - 494 4.5e-07 29.6 51.9 5 13 0.0043 2.8 7.9 3.0 2 38 219 255 218 256 0.82 Transcription factor S-II (TFIIS) TFIIS_C PF01096.18 39 ZNF530-204 - 494 4.5e-07 29.6 51.9 6 13 0.06 40 4.2 0.1 29 38 274 283 271 284 0.85 Transcription factor S-II (TFIIS) TFIIS_C PF01096.18 39 ZNF530-204 - 494 4.5e-07 29.6 51.9 7 13 0.062 41 4.1 0.1 29 38 302 311 299 312 0.88 Transcription factor S-II (TFIIS) TFIIS_C PF01096.18 39 ZNF530-204 - 494 4.5e-07 29.6 51.9 8 13 0.047 31 4.5 0.1 29 38 330 339 327 340 0.88 Transcription factor S-II (TFIIS) TFIIS_C PF01096.18 39 ZNF530-204 - 494 4.5e-07 29.6 51.9 9 13 0.075 50 3.9 0.2 26 38 355 367 351 368 0.85 Transcription factor S-II (TFIIS) TFIIS_C PF01096.18 39 ZNF530-204 - 494 4.5e-07 29.6 51.9 10 13 0.43 2.8e+02 1.4 0.1 29 38 386 395 384 396 0.84 Transcription factor S-II (TFIIS) TFIIS_C PF01096.18 39 ZNF530-204 - 494 4.5e-07 29.6 51.9 11 13 0.12 77 3.3 0.2 29 38 414 423 410 424 0.84 Transcription factor S-II (TFIIS) TFIIS_C PF01096.18 39 ZNF530-204 - 494 4.5e-07 29.6 51.9 12 13 0.041 28 4.7 3.8 2 39 415 452 414 452 0.80 Transcription factor S-II (TFIIS) TFIIS_C PF01096.18 39 ZNF530-204 - 494 4.5e-07 29.6 51.9 13 13 0.054 36 4.3 0.1 29 38 470 479 467 480 0.87 Transcription factor S-II (TFIIS) # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF530-204.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF530-204.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF530-204.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF530-204.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF530-204.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:08:20 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZNF530-205 - 599 5.2e-94 304.8 103.5 1 15 1.2 9.7e+02 0.5 0.1 4 19 200 215 198 221 0.79 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF530-205 - 599 5.2e-94 304.8 103.5 2 15 3.6e-06 0.0029 18.0 0.1 11 25 235 249 227 250 0.85 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF530-205 - 599 5.2e-94 304.8 103.5 3 15 0.00015 0.12 12.8 1.8 4 25 256 277 253 278 0.85 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF530-205 - 599 5.2e-94 304.8 103.5 4 15 8.3e-11 6.7e-08 32.6 0.9 1 25 281 305 281 306 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF530-205 - 599 5.2e-94 304.8 103.5 5 15 1.2e-11 9.8e-09 35.3 0.6 3 26 311 334 310 334 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF530-205 - 599 5.2e-94 304.8 103.5 6 15 2e-08 1.7e-05 25.0 2.5 1 26 337 362 337 362 0.97 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF530-205 - 599 5.2e-94 304.8 103.5 7 15 3.6e-10 2.9e-07 30.6 0.8 1 25 365 389 365 390 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF530-205 - 599 5.2e-94 304.8 103.5 8 15 5.6e-10 4.5e-07 30.0 0.9 4 25 396 417 393 418 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF530-205 - 599 5.2e-94 304.8 103.5 9 15 2.7e-11 2.2e-08 34.2 0.1 3 25 423 445 422 446 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF530-205 - 599 5.2e-94 304.8 103.5 10 15 5.1e-08 4.1e-05 23.8 4.4 2 25 450 473 449 474 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF530-205 - 599 5.2e-94 304.8 103.5 11 15 5.6e-11 4.6e-08 33.1 0.1 1 24 477 500 477 502 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF530-205 - 599 5.2e-94 304.8 103.5 12 15 6.4e-10 5.2e-07 29.8 0.7 1 25 505 529 505 530 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF530-205 - 599 5.2e-94 304.8 103.5 13 15 3.1e-11 2.5e-08 34.0 0.4 1 26 533 558 533 558 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF530-205 - 599 5.2e-94 304.8 103.5 14 15 2.4e-10 2e-07 31.1 0.8 1 25 561 585 561 586 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF530-205 - 599 5.2e-94 304.8 103.5 15 15 1.7 1.4e+03 -0.0 0.4 2 9 590 597 589 599 0.87 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZNF530-205 - 599 2.7e-69 225.9 115.4 1 16 1.3 1e+03 0.5 0.1 1 10 91 100 91 102 0.81 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF530-205 - 599 2.7e-69 225.9 115.4 2 16 2 1.6e+03 -0.1 0.0 7 20 174 187 174 189 0.88 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF530-205 - 599 2.7e-69 225.9 115.4 3 16 1.5 1.2e+03 0.2 0.1 8 21 218 231 217 232 0.92 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF530-205 - 599 2.7e-69 225.9 115.4 4 16 7.2e-08 5.8e-05 23.3 1.5 1 23 239 261 239 261 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF530-205 - 599 2.7e-69 225.9 115.4 5 16 2.1e-08 1.7e-05 25.0 4.9 1 23 267 289 267 289 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF530-205 - 599 2.7e-69 225.9 115.4 6 16 3.6e-07 0.00029 21.1 0.3 1 23 295 317 295 317 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF530-205 - 599 2.7e-69 225.9 115.4 7 16 1.5e-07 0.00012 22.3 2.8 1 23 323 345 323 345 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF530-205 - 599 2.7e-69 225.9 115.4 8 16 1.1e-08 9.3e-06 25.8 2.5 1 23 351 373 351 373 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF530-205 - 599 2.7e-69 225.9 115.4 9 16 0.00024 0.2 12.2 3.5 1 23 379 401 379 401 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF530-205 - 599 2.7e-69 225.9 115.4 10 16 7e-08 5.7e-05 23.3 0.2 1 23 407 429 407 429 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF530-205 - 599 2.7e-69 225.9 115.4 11 16 1.3e-08 1e-05 25.7 0.6 1 23 435 457 435 457 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF530-205 - 599 2.7e-69 225.9 115.4 12 16 3.2e-05 0.026 15.0 2.3 1 23 463 485 463 485 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF530-205 - 599 2.7e-69 225.9 115.4 13 16 2e-08 1.7e-05 25.0 1.7 1 23 491 513 491 513 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF530-205 - 599 2.7e-69 225.9 115.4 14 16 3.2e-08 2.6e-05 24.4 0.3 1 23 519 541 519 541 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF530-205 - 599 2.7e-69 225.9 115.4 15 16 1.9e-07 0.00015 22.0 2.6 1 23 547 569 547 569 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF530-205 - 599 2.7e-69 225.9 115.4 16 16 3.8e-09 3.1e-06 27.3 0.6 1 23 575 597 575 597 0.98 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZNF530-205 - 599 1.8e-48 159.0 109.3 1 15 0.72 5.8e+02 1.8 0.0 1 13 91 103 91 111 0.75 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF530-205 - 599 1.8e-48 159.0 109.3 2 15 6.6 5.3e+03 -1.2 0.0 7 21 174 188 173 190 0.81 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF530-205 - 599 1.8e-48 159.0 109.3 3 15 2.7e-07 0.00022 21.8 1.0 1 23 239 261 239 262 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF530-205 - 599 1.8e-48 159.0 109.3 4 15 2.3e-05 0.019 15.8 4.1 1 23 267 289 267 290 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF530-205 - 599 1.8e-48 159.0 109.3 5 15 0.00026 0.21 12.5 0.4 3 23 297 317 295 318 0.89 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF530-205 - 599 1.8e-48 159.0 109.3 6 15 1.8e-05 0.015 16.1 2.2 1 23 323 345 323 346 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF530-205 - 599 1.8e-48 159.0 109.3 7 15 4.9e-06 0.004 17.9 2.5 1 23 351 373 351 374 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF530-205 - 599 1.8e-48 159.0 109.3 8 15 0.00024 0.2 12.6 3.2 1 23 379 401 379 402 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF530-205 - 599 1.8e-48 159.0 109.3 9 15 5.6e-05 0.046 14.6 0.4 1 23 407 429 407 430 0.90 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF530-205 - 599 1.8e-48 159.0 109.3 10 15 5.8e-07 0.00047 20.8 0.7 1 23 435 457 435 458 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF530-205 - 599 1.8e-48 159.0 109.3 11 15 5.2e-06 0.0043 17.8 2.3 1 23 463 485 463 486 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF530-205 - 599 1.8e-48 159.0 109.3 12 15 8.7e-06 0.0071 17.1 1.4 1 23 491 513 491 514 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF530-205 - 599 1.8e-48 159.0 109.3 13 15 3e-06 0.0025 18.5 0.4 1 23 519 541 519 542 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF530-205 - 599 1.8e-48 159.0 109.3 14 15 9.2e-06 0.0075 17.0 2.0 1 23 547 569 547 570 0.89 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF530-205 - 599 1.8e-48 159.0 109.3 15 15 5.1e-07 0.00041 20.9 0.6 1 23 575 597 575 598 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF530-205 - 599 1.3e-29 101.6 109.5 1 13 0.0002 0.16 12.0 1.0 2 12 239 249 239 261 0.91 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF530-205 - 599 1.3e-29 101.6 109.5 2 13 4.4e-05 0.036 14.1 3.7 2 22 267 287 266 291 0.84 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF530-205 - 599 1.3e-29 101.6 109.5 3 13 0.00013 0.1 12.6 0.3 2 24 295 317 295 320 0.85 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF530-205 - 599 1.3e-29 101.6 109.5 4 13 2e-05 0.016 15.2 4.0 2 24 323 345 323 348 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF530-205 - 599 1.3e-29 101.6 109.5 5 13 4.5e-05 0.037 14.0 1.9 2 20 351 369 351 374 0.88 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF530-205 - 599 1.3e-29 101.6 109.5 6 13 0.00096 0.78 9.8 0.8 2 12 379 389 379 389 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF530-205 - 599 1.3e-29 101.6 109.5 7 13 0.00018 0.15 12.1 0.5 2 20 407 425 407 431 0.78 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF530-205 - 599 1.3e-29 101.6 109.5 8 13 4e-06 0.0032 17.4 1.9 2 25 435 458 435 460 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF530-205 - 599 1.3e-29 101.6 109.5 9 13 0.00064 0.52 10.4 2.1 2 18 463 479 463 486 0.79 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF530-205 - 599 1.3e-29 101.6 109.5 10 13 0.00021 0.17 11.9 0.3 2 11 491 500 491 511 0.92 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF530-205 - 599 1.3e-29 101.6 109.5 11 13 2.9e-05 0.024 14.6 0.7 2 24 519 541 519 544 0.92 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF530-205 - 599 1.3e-29 101.6 109.5 12 13 0.00014 0.12 12.5 1.9 2 24 547 569 547 572 0.92 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF530-205 - 599 1.3e-29 101.6 109.5 13 13 6.9e-05 0.056 13.5 0.8 2 13 575 586 575 597 0.76 C2H2-type zinc finger KRAB PF01352.27 42 ZNF530-205 - 599 4e-22 77.6 1.3 1 1 9.5e-25 7.7e-22 76.7 1.3 2 42 14 54 13 54 0.98 KRAB box zf-C2H2_jaz PF12171.8 27 ZNF530-205 - 599 7.8e-14 51.5 49.8 1 14 3.3 2.7e+03 -1.2 0.1 9 22 218 231 217 231 0.89 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF530-205 - 599 7.8e-14 51.5 49.8 2 14 0.016 13 6.2 0.1 2 22 239 259 238 259 0.89 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF530-205 - 599 7.8e-14 51.5 49.8 3 14 0.0025 2 8.8 0.6 2 22 267 287 266 287 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF530-205 - 599 7.8e-14 51.5 49.8 4 14 0.017 14 6.1 0.0 2 22 295 315 294 315 0.91 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF530-205 - 599 7.8e-14 51.5 49.8 5 14 0.02 16 5.9 0.2 2 20 323 341 322 343 0.83 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF530-205 - 599 7.8e-14 51.5 49.8 6 14 0.022 18 5.8 0.2 2 20 351 369 350 371 0.82 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF530-205 - 599 7.8e-14 51.5 49.8 7 14 0.48 4e+02 1.5 0.1 2 12 379 389 378 389 0.88 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF530-205 - 599 7.8e-14 51.5 49.8 8 14 0.023 19 5.7 0.0 2 22 407 427 406 427 0.91 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF530-205 - 599 7.8e-14 51.5 49.8 9 14 0.16 1.3e+02 3.0 0.0 2 12 435 445 434 450 0.89 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF530-205 - 599 7.8e-14 51.5 49.8 10 14 0.038 31 5.0 0.8 2 20 463 481 462 483 0.78 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF530-205 - 599 7.8e-14 51.5 49.8 11 14 0.004 3.3 8.1 0.1 2 21 491 510 490 511 0.90 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF530-205 - 599 7.8e-14 51.5 49.8 12 14 0.0024 1.9 8.9 0.0 2 21 519 538 518 539 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF530-205 - 599 7.8e-14 51.5 49.8 13 14 0.0056 4.6 7.6 0.3 2 21 547 566 546 567 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF530-205 - 599 7.8e-14 51.5 49.8 14 14 0.026 21 5.5 0.0 2 21 575 594 574 595 0.85 Zinc-finger double-stranded RNA-binding zf_UBZ PF18439.1 32 ZNF530-205 - 599 1.1e-13 50.5 67.3 1 14 7.1 5.8e+03 -3.0 0.3 2 8 90 96 89 97 0.82 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF530-205 - 599 1.1e-13 50.5 67.3 2 14 0.00098 0.8 9.4 0.1 3 15 239 251 237 257 0.87 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF530-205 - 599 1.1e-13 50.5 67.3 3 14 0.0035 2.8 7.6 1.2 2 20 266 285 265 286 0.81 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF530-205 - 599 1.1e-13 50.5 67.3 4 14 0.0064 5.2 6.8 0.1 3 13 295 305 293 314 0.83 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF530-205 - 599 1.1e-13 50.5 67.3 5 14 0.0015 1.2 8.8 0.1 3 15 323 335 321 341 0.88 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF530-205 - 599 1.1e-13 50.5 67.3 6 14 0.0017 1.4 8.6 0.1 3 15 351 363 349 366 0.88 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF530-205 - 599 1.1e-13 50.5 67.3 7 14 0.0087 7.1 6.3 1.1 3 15 379 391 377 401 0.80 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF530-205 - 599 1.1e-13 50.5 67.3 8 14 0.0032 2.6 7.7 0.1 3 12 407 416 405 425 0.89 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF530-205 - 599 1.1e-13 50.5 67.3 9 14 0.003 2.5 7.8 0.1 3 15 435 447 433 449 0.88 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF530-205 - 599 1.1e-13 50.5 67.3 10 14 0.024 20 4.9 1.8 3 20 463 481 461 482 0.80 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF530-205 - 599 1.1e-13 50.5 67.3 11 14 0.18 1.5e+02 2.1 0.1 3 12 491 500 489 506 0.88 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF530-205 - 599 1.1e-13 50.5 67.3 12 14 0.00068 0.56 9.9 0.1 3 20 519 537 517 538 0.90 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF530-205 - 599 1.1e-13 50.5 67.3 13 14 0.043 35 4.1 0.2 3 13 547 557 545 566 0.83 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF530-205 - 599 1.1e-13 50.5 67.3 14 14 0.0012 0.98 9.1 0.1 3 15 575 587 573 594 0.85 Ubiquitin-Binding Zinc Finger Zn-ribbon_8 PF09723.10 40 ZNF530-205 - 599 1.6e-09 37.7 78.4 1 12 6.6e-05 0.054 13.6 3.9 6 38 239 278 238 280 0.83 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF530-205 - 599 1.6e-09 37.7 78.4 2 12 0.001 0.83 9.8 4.9 7 39 268 307 266 308 0.90 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF530-205 - 599 1.6e-09 37.7 78.4 3 12 0.0016 1.3 9.2 5.0 6 34 295 330 294 333 0.90 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF530-205 - 599 1.6e-09 37.7 78.4 4 12 0.0032 2.6 8.2 6.7 6 34 323 358 322 361 0.86 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF530-205 - 599 1.6e-09 37.7 78.4 5 12 0.012 9.6 6.4 0.8 6 16 351 361 350 368 0.88 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF530-205 - 599 1.6e-09 37.7 78.4 6 12 0.00015 0.12 12.5 4.0 6 34 379 414 378 420 0.92 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF530-205 - 599 1.6e-09 37.7 78.4 7 12 0.0058 4.8 7.4 6.7 6 34 435 470 434 472 0.83 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF530-205 - 599 1.6e-09 37.7 78.4 8 12 0.019 16 5.7 6.9 6 35 463 499 462 504 0.88 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF530-205 - 599 1.6e-09 37.7 78.4 9 12 0.0045 3.7 7.8 4.4 6 34 491 526 490 530 0.88 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF530-205 - 599 1.6e-09 37.7 78.4 10 12 0.0027 2.2 8.5 6.4 6 38 519 558 518 560 0.83 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF530-205 - 599 1.6e-09 37.7 78.4 11 12 0.002 1.6 8.9 6.7 6 34 547 582 546 586 0.77 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF530-205 - 599 1.6e-09 37.7 78.4 12 12 0.0097 7.9 6.7 0.7 6 16 575 585 574 593 0.87 Zinc ribbon domain zinc_ribbon_15 PF17032.5 86 ZNF530-205 - 599 1.7e-07 31.9 52.9 1 10 5.4e-05 0.044 14.5 1.2 22 78 223 279 207 285 0.84 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF530-205 - 599 1.7e-07 31.9 52.9 2 10 0.0011 0.89 10.3 0.6 32 75 261 304 252 310 0.84 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF530-205 - 599 1.7e-07 31.9 52.9 3 10 0.0066 5.4 7.8 1.1 34 78 291 335 284 341 0.83 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF530-205 - 599 1.7e-07 31.9 52.9 4 10 0.00063 0.51 11.1 4.9 26 78 311 363 297 369 0.87 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF530-205 - 599 1.7e-07 31.9 52.9 5 10 0.0021 1.7 9.4 1.6 37 77 350 390 343 394 0.88 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF530-205 - 599 1.7e-07 31.9 52.9 6 10 0.03 24 5.8 0.8 30 75 371 416 365 425 0.75 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF530-205 - 599 1.7e-07 31.9 52.9 7 10 0.0015 1.2 9.9 4.9 21 78 390 447 380 450 0.87 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF530-205 - 599 1.7e-07 31.9 52.9 8 10 0.0012 0.97 10.2 3.6 27 77 424 474 419 481 0.86 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF530-205 - 599 1.7e-07 31.9 52.9 9 10 0.0044 3.6 8.4 1.3 33 78 486 531 478 534 0.84 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF530-205 - 599 1.7e-07 31.9 52.9 10 10 0.0025 2.1 9.2 1.7 33 77 542 586 535 589 0.84 zinc-ribbon family XPA_N PF01286.18 32 ZNF530-205 - 599 2e-07 30.9 64.6 1 13 0.0051 4.2 7.5 0.7 3 14 240 251 238 254 0.92 XPA protein N-terminal XPA_N PF01286.18 32 ZNF530-205 - 599 2e-07 30.9 64.6 2 13 0.035 28 4.9 0.5 3 12 268 277 266 279 0.88 XPA protein N-terminal XPA_N PF01286.18 32 ZNF530-205 - 599 2e-07 30.9 64.6 3 13 0.028 23 5.2 0.1 3 12 296 305 294 313 0.83 XPA protein N-terminal XPA_N PF01286.18 32 ZNF530-205 - 599 2e-07 30.9 64.6 4 13 0.0074 6 7.0 0.2 3 14 324 335 322 339 0.91 XPA protein N-terminal XPA_N PF01286.18 32 ZNF530-205 - 599 2e-07 30.9 64.6 5 13 0.0051 4.2 7.5 0.1 3 14 352 363 350 372 0.86 XPA protein N-terminal XPA_N PF01286.18 32 ZNF530-205 - 599 2e-07 30.9 64.6 6 13 0.028 23 5.2 0.4 3 12 380 389 378 396 0.87 XPA protein N-terminal XPA_N PF01286.18 32 ZNF530-205 - 599 2e-07 30.9 64.6 7 13 0.019 16 5.7 0.0 3 13 408 418 406 425 0.81 XPA protein N-terminal XPA_N PF01286.18 32 ZNF530-205 - 599 2e-07 30.9 64.6 8 13 0.015 12 6.0 0.2 3 14 436 447 434 452 0.91 XPA protein N-terminal XPA_N PF01286.18 32 ZNF530-205 - 599 2e-07 30.9 64.6 9 13 0.5 4.1e+02 1.1 2.8 3 11 464 472 462 474 0.89 XPA protein N-terminal XPA_N PF01286.18 32 ZNF530-205 - 599 2e-07 30.9 64.6 10 13 0.74 6e+02 0.6 0.1 3 11 492 500 490 502 0.67 XPA protein N-terminal XPA_N PF01286.18 32 ZNF530-205 - 599 2e-07 30.9 64.6 11 13 0.018 15 5.8 0.2 3 14 520 531 518 537 0.83 XPA protein N-terminal XPA_N PF01286.18 32 ZNF530-205 - 599 2e-07 30.9 64.6 12 13 0.018 15 5.8 0.2 3 12 548 557 546 558 0.88 XPA protein N-terminal XPA_N PF01286.18 32 ZNF530-205 - 599 2e-07 30.9 64.6 13 13 0.004 3.2 7.9 0.2 3 14 576 587 574 593 0.90 XPA protein N-terminal # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF530-205.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF530-205.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF530-205.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF530-205.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF530-205.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:08:20 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- KRAB PF01352.27 42 ZNF534-201 - 193 7e-26 89.6 0.1 1 1 6e-30 1.1e-25 89.0 0.1 2 42 8 48 7 48 0.98 KRAB box # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF534-201.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF534-201.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF534-201.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF534-201.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF534-201.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:08:21 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZNF534-202 - 674 2.3e-112 362.9 117.3 1 18 1.5 1.2e+03 0.2 0.3 7 17 191 201 190 208 0.84 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF534-202 - 674 2.3e-112 362.9 117.3 2 18 0.031 25 5.5 0.0 9 25 221 237 217 238 0.82 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF534-202 - 674 2.3e-112 362.9 117.3 3 18 1e-08 8.4e-06 26.0 0.2 1 25 241 265 241 266 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF534-202 - 674 2.3e-112 362.9 117.3 4 18 8.9e-07 0.00073 19.9 1.0 1 26 269 294 269 294 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF534-202 - 674 2.3e-112 362.9 117.3 5 18 4.3e-11 3.5e-08 33.5 0.9 2 25 298 321 297 321 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF534-202 - 674 2.3e-112 362.9 117.3 6 18 2.7e-09 2.2e-06 27.8 0.6 1 26 325 350 325 350 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF534-202 - 674 2.3e-112 362.9 117.3 7 18 2.2e-09 1.8e-06 28.1 0.5 1 25 353 377 353 378 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF534-202 - 674 2.3e-112 362.9 117.3 8 18 7.3e-11 5.9e-08 32.8 0.7 2 24 382 404 382 405 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF534-202 - 674 2.3e-112 362.9 117.3 9 18 1.3e-08 1.1e-05 25.6 0.8 2 25 410 433 409 434 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF534-202 - 674 2.3e-112 362.9 117.3 10 18 2.5e-10 2e-07 31.1 0.2 1 26 437 462 437 462 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF534-202 - 674 2.3e-112 362.9 117.3 11 18 1.3e-11 1.1e-08 35.2 2.3 1 25 465 489 465 490 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF534-202 - 674 2.3e-112 362.9 117.3 12 18 8.6e-11 7e-08 32.5 0.8 1 25 493 517 493 518 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF534-202 - 674 2.3e-112 362.9 117.3 13 18 9.4e-09 7.7e-06 26.1 0.7 1 25 521 545 521 546 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF534-202 - 674 2.3e-112 362.9 117.3 14 18 2.8e-10 2.3e-07 30.9 1.3 1 25 549 573 549 574 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF534-202 - 674 2.3e-112 362.9 117.3 15 18 5.4e-09 4.4e-06 26.9 2.0 1 25 577 601 577 602 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF534-202 - 674 2.3e-112 362.9 117.3 16 18 1.1e-09 8.9e-07 29.1 2.5 1 25 605 629 605 630 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF534-202 - 674 2.3e-112 362.9 117.3 17 18 5.7e-08 4.7e-05 23.6 0.3 2 25 634 657 633 658 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF534-202 - 674 2.3e-112 362.9 117.3 18 18 0.11 87 3.8 0.0 2 14 662 674 662 674 0.94 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZNF534-202 - 674 7.5e-85 274.9 130.9 1 17 2.4 2e+03 -0.4 0.0 7 17 202 215 199 216 0.77 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF534-202 - 674 7.5e-85 274.9 130.9 2 17 1.2e-08 9.8e-06 25.8 0.4 1 23 227 249 227 249 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF534-202 - 674 7.5e-85 274.9 130.9 3 17 1.5e-06 0.0012 19.2 0.3 5 23 259 277 258 277 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF534-202 - 674 7.5e-85 274.9 130.9 4 17 0.00015 0.12 12.9 1.2 5 23 287 305 285 305 0.95 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF534-202 - 674 7.5e-85 274.9 130.9 5 17 3.8e-07 0.00031 21.0 0.7 1 23 311 333 311 333 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF534-202 - 674 7.5e-85 274.9 130.9 6 17 7.5e-08 6.1e-05 23.3 2.7 1 23 339 361 339 361 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF534-202 - 674 7.5e-85 274.9 130.9 7 17 5.2e-07 0.00042 20.6 0.4 1 23 367 389 367 389 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF534-202 - 674 7.5e-85 274.9 130.9 8 17 2.8e-07 0.00023 21.4 0.3 1 23 395 417 395 417 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF534-202 - 674 7.5e-85 274.9 130.9 9 17 1e-08 8.2e-06 26.0 1.0 1 23 423 445 423 445 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF534-202 - 674 7.5e-85 274.9 130.9 10 17 7.1e-05 0.058 13.9 4.3 1 23 451 473 451 473 0.94 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF534-202 - 674 7.5e-85 274.9 130.9 11 17 3.8e-10 3.1e-07 30.5 1.2 1 23 479 501 479 501 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF534-202 - 674 7.5e-85 274.9 130.9 12 17 1.7e-08 1.4e-05 25.3 1.3 1 23 507 529 507 529 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF534-202 - 674 7.5e-85 274.9 130.9 13 17 2.7e-09 2.2e-06 27.8 2.5 1 23 535 557 535 557 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF534-202 - 674 7.5e-85 274.9 130.9 14 17 2.4e-09 1.9e-06 28.0 1.8 1 23 563 585 563 585 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF534-202 - 674 7.5e-85 274.9 130.9 15 17 2e-08 1.6e-05 25.1 3.9 1 23 591 613 591 613 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF534-202 - 674 7.5e-85 274.9 130.9 16 17 1.4e-07 0.00011 22.4 1.2 1 23 619 641 619 641 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF534-202 - 674 7.5e-85 274.9 130.9 17 17 0.00011 0.094 13.2 1.3 1 21 647 667 647 669 0.87 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZNF534-202 - 674 1.2e-45 150.2 122.9 1 17 6.6 5.4e+03 -1.2 0.0 2 18 200 216 199 221 0.78 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF534-202 - 674 1.2e-45 150.2 122.9 2 17 1.7e-05 0.014 16.2 0.4 1 23 227 249 227 250 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF534-202 - 674 1.2e-45 150.2 122.9 3 17 0.003 2.4 9.2 0.3 5 23 259 277 257 278 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF534-202 - 674 1.2e-45 150.2 122.9 4 17 0.0087 7.1 7.8 0.8 4 23 286 305 283 306 0.77 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF534-202 - 674 1.2e-45 150.2 122.9 5 17 2.8e-05 0.023 15.5 1.1 1 23 311 333 311 334 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF534-202 - 674 1.2e-45 150.2 122.9 6 17 0.00073 0.6 11.1 2.0 3 23 341 361 339 362 0.88 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF534-202 - 674 1.2e-45 150.2 122.9 7 17 3.9e-05 0.032 15.1 0.4 1 23 367 389 367 390 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF534-202 - 674 1.2e-45 150.2 122.9 8 17 2.2e-05 0.018 15.8 0.2 1 23 395 417 395 418 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF534-202 - 674 1.2e-45 150.2 122.9 9 17 4e-06 0.0033 18.1 0.9 1 23 423 445 423 446 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF534-202 - 674 1.2e-45 150.2 122.9 10 17 0.00098 0.8 10.7 3.5 1 23 451 473 451 474 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF534-202 - 674 1.2e-45 150.2 122.9 11 17 7.5e-07 0.00061 20.4 0.8 1 23 479 501 479 502 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF534-202 - 674 1.2e-45 150.2 122.9 12 17 6.1e-05 0.05 14.5 0.9 1 23 507 529 507 530 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF534-202 - 674 1.2e-45 150.2 122.9 13 17 3e-05 0.025 15.4 1.7 1 23 535 557 535 558 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF534-202 - 674 1.2e-45 150.2 122.9 14 17 1.5e-05 0.012 16.4 1.2 1 23 563 585 563 586 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF534-202 - 674 1.2e-45 150.2 122.9 15 17 3.4e-05 0.028 15.2 2.9 1 23 591 613 591 614 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF534-202 - 674 1.2e-45 150.2 122.9 16 17 2.2e-05 0.018 15.8 0.9 1 23 619 641 619 642 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF534-202 - 674 1.2e-45 150.2 122.9 17 17 0.00032 0.26 12.2 1.3 1 23 647 669 647 670 0.86 C2H2-type zinc finger KRAB PF01352.27 42 ZNF534-202 - 674 3.6e-25 87.3 0.1 1 1 7.8e-28 6.4e-25 86.5 0.1 2 42 8 48 7 48 0.98 KRAB box zf-C2H2_6 PF13912.6 27 ZNF534-202 - 674 6.8e-16 57.8 126.3 1 16 0.14 1.2e+02 2.9 0.6 2 13 227 238 226 240 0.92 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF534-202 - 674 6.8e-16 57.8 126.3 2 16 0.52 4.2e+02 1.1 1.2 6 12 259 265 258 276 0.69 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF534-202 - 674 6.8e-16 57.8 126.3 3 16 0.23 1.9e+02 2.2 0.1 5 12 286 293 286 305 0.86 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF534-202 - 674 6.8e-16 57.8 126.3 4 16 0.00036 0.3 11.2 1.8 2 21 311 330 311 333 0.90 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF534-202 - 674 6.8e-16 57.8 126.3 5 16 0.00058 0.47 10.5 1.8 2 21 339 358 339 363 0.86 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF534-202 - 674 6.8e-16 57.8 126.3 6 16 0.00034 0.28 11.2 0.5 2 24 367 389 367 392 0.86 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF534-202 - 674 6.8e-16 57.8 126.3 7 16 0.0029 2.4 8.3 1.4 2 11 395 404 395 404 0.97 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF534-202 - 674 6.8e-16 57.8 126.3 8 16 9.1e-06 0.0074 16.3 1.1 1 21 422 442 422 445 0.92 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF534-202 - 674 6.8e-16 57.8 126.3 9 16 0.5 4.1e+02 1.1 1.8 2 12 451 461 451 471 0.87 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF534-202 - 674 6.8e-16 57.8 126.3 10 16 6.2e-05 0.051 13.6 0.9 2 24 479 501 479 504 0.90 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF534-202 - 674 6.8e-16 57.8 126.3 11 16 0.0011 0.92 9.6 3.4 2 25 507 526 506 528 0.76 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF534-202 - 674 6.8e-16 57.8 126.3 12 16 0.0021 1.7 8.8 0.3 2 12 535 545 535 554 0.90 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF534-202 - 674 6.8e-16 57.8 126.3 13 16 0.013 10 6.2 3.3 2 13 563 574 563 584 0.81 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF534-202 - 674 6.8e-16 57.8 126.3 14 16 0.008 6.5 6.9 4.4 2 26 591 611 591 613 0.73 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF534-202 - 674 6.8e-16 57.8 126.3 15 16 0.00016 0.13 12.3 0.3 2 12 619 629 618 638 0.91 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF534-202 - 674 6.8e-16 57.8 126.3 16 16 0.0048 3.9 7.6 1.4 2 12 647 657 647 658 0.89 C2H2-type zinc finger Zn-ribbon_8 PF09723.10 40 ZNF534-202 - 674 9e-16 57.7 81.6 1 16 0.46 3.7e+02 1.3 0.0 6 20 199 213 198 221 0.83 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF534-202 - 674 9e-16 57.7 81.6 2 16 0.0044 3.6 7.8 1.5 6 22 227 249 225 262 0.69 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF534-202 - 674 9e-16 57.7 81.6 3 16 0.92 7.5e+02 0.4 0.2 9 20 258 275 254 290 0.65 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF534-202 - 674 9e-16 57.7 81.6 4 16 0.0043 3.5 7.8 1.2 9 34 286 318 282 322 0.70 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF534-202 - 674 9e-16 57.7 81.6 5 16 0.00081 0.66 10.1 5.7 6 34 311 346 310 349 0.82 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF534-202 - 674 9e-16 57.7 81.6 6 16 0.0002 0.16 12.1 3.9 6 38 339 378 337 380 0.88 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF534-202 - 674 9e-16 57.7 81.6 7 16 0.00014 0.12 12.6 3.6 6 34 367 402 366 403 0.86 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF534-202 - 674 9e-16 57.7 81.6 8 16 0.0029 2.3 8.4 5.3 6 35 395 431 393 433 0.83 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF534-202 - 674 9e-16 57.7 81.6 9 16 0.021 17 5.6 6.0 6 34 423 458 422 461 0.78 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF534-202 - 674 9e-16 57.7 81.6 10 16 0.029 24 5.1 0.7 6 17 451 462 450 472 0.79 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF534-202 - 674 9e-16 57.7 81.6 11 16 0.00025 0.2 11.8 4.1 6 33 479 513 478 513 0.85 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF534-202 - 674 9e-16 57.7 81.6 12 16 3.6e-05 0.029 14.5 3.3 6 38 507 546 506 548 0.86 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF534-202 - 674 9e-16 57.7 81.6 13 16 0.013 11 6.3 0.3 6 16 535 545 534 554 0.85 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF534-202 - 674 9e-16 57.7 81.6 14 16 2e-05 0.016 15.3 1.3 6 34 563 598 562 604 0.85 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF534-202 - 674 9e-16 57.7 81.6 15 16 0.0016 1.3 9.2 3.5 6 34 619 654 618 658 0.78 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF534-202 - 674 9e-16 57.7 81.6 16 16 0.0078 6.4 7.0 0.4 6 17 647 658 644 670 0.85 Zinc ribbon domain zf_UBZ PF18439.1 32 ZNF534-202 - 674 3.3e-11 42.6 64.3 1 16 0.00039 0.31 10.6 0.1 2 21 226 246 225 246 0.92 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF534-202 - 674 3.3e-11 42.6 64.3 2 16 1.4 1.2e+03 -0.8 0.1 7 21 259 274 258 274 0.82 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF534-202 - 674 3.3e-11 42.6 64.3 3 16 0.52 4.3e+02 0.6 0.1 7 18 287 299 286 302 0.76 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF534-202 - 674 3.3e-11 42.6 64.3 4 16 0.0036 3 7.5 0.3 3 15 311 323 309 330 0.78 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF534-202 - 674 3.3e-11 42.6 64.3 5 16 0.0068 5.5 6.7 0.3 3 21 339 358 337 358 0.84 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF534-202 - 674 3.3e-11 42.6 64.3 6 16 0.079 64 3.3 0.1 3 13 367 377 365 381 0.87 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF534-202 - 674 3.3e-11 42.6 64.3 7 16 0.034 28 4.4 0.1 3 13 395 405 393 413 0.83 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF534-202 - 674 3.3e-11 42.6 64.3 8 16 0.041 33 4.2 0.3 3 14 423 434 421 442 0.75 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF534-202 - 674 3.3e-11 42.6 64.3 9 16 0.41 3.3e+02 1.0 0.1 3 12 451 460 449 467 0.85 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF534-202 - 674 3.3e-11 42.6 64.3 10 16 0.0028 2.3 7.9 0.1 3 20 479 497 477 498 0.86 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF534-202 - 674 3.3e-11 42.6 64.3 11 16 0.00098 0.8 9.4 0.2 3 24 507 529 505 530 0.91 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF534-202 - 674 3.3e-11 42.6 64.3 12 16 0.047 38 4.0 0.1 3 12 535 544 533 550 0.84 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF534-202 - 674 3.3e-11 42.6 64.3 13 16 0.013 10 5.8 0.1 3 15 563 575 561 581 0.83 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF534-202 - 674 3.3e-11 42.6 64.3 14 16 0.052 43 3.8 0.2 4 15 592 603 589 609 0.81 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF534-202 - 674 3.3e-11 42.6 64.3 15 16 0.018 14 5.3 0.1 3 20 619 637 617 638 0.81 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF534-202 - 674 3.3e-11 42.6 64.3 16 16 0.01 8.1 6.1 0.1 3 15 647 659 645 665 0.84 Ubiquitin-Binding Zinc Finger zf-C2H2_11 PF16622.5 29 ZNF534-202 - 674 1.6e-09 37.4 86.5 1 15 0.00096 0.79 9.5 0.2 4 26 226 248 224 249 0.88 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF534-202 - 674 1.6e-09 37.4 86.5 2 15 0.22 1.8e+02 2.0 0.4 9 26 287 304 286 305 0.93 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF534-202 - 674 1.6e-09 37.4 86.5 3 15 0.00032 0.26 11.1 0.4 5 26 311 332 308 333 0.93 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF534-202 - 674 1.6e-09 37.4 86.5 4 15 0.31 2.5e+02 1.5 0.3 7 23 341 357 338 361 0.85 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF534-202 - 674 1.6e-09 37.4 86.5 5 15 0.00057 0.46 10.3 0.2 5 25 367 387 365 389 0.92 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF534-202 - 674 1.6e-09 37.4 86.5 6 15 0.003 2.4 8.0 0.0 5 26 395 416 392 417 0.93 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF534-202 - 674 1.6e-09 37.4 86.5 7 15 0.26 2.1e+02 1.8 0.8 5 20 423 438 422 445 0.71 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF534-202 - 674 1.6e-09 37.4 86.5 8 15 0.028 23 4.9 1.5 6 26 452 472 449 473 0.94 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF534-202 - 674 1.6e-09 37.4 86.5 9 15 4.1e-05 0.034 13.9 0.1 5 26 479 500 476 501 0.94 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF534-202 - 674 1.6e-09 37.4 86.5 10 15 0.12 99 2.8 0.4 5 26 507 528 506 529 0.82 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF534-202 - 674 1.6e-09 37.4 86.5 11 15 0.17 1.4e+02 2.4 0.4 7 24 537 554 534 557 0.88 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF534-202 - 674 1.6e-09 37.4 86.5 12 15 0.0013 1.1 9.1 0.4 7 26 565 584 562 585 0.93 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF534-202 - 674 1.6e-09 37.4 86.5 13 15 0.00076 0.62 9.9 0.6 5 26 591 612 588 613 0.92 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF534-202 - 674 1.6e-09 37.4 86.5 14 15 0.24 2e+02 1.9 0.7 5 26 619 640 618 641 0.91 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF534-202 - 674 1.6e-09 37.4 86.5 15 15 0.098 80 3.1 1.6 7 26 649 668 647 669 0.91 zinc-finger C2H2-type C1_1 PF00130.22 53 ZNF534-202 - 674 3.5e-09 36.4 53.4 1 11 0.064 52 3.8 0.1 9 21 224 236 217 251 0.70 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF534-202 - 674 3.5e-09 36.4 53.4 2 11 0.016 13 5.8 3.1 7 38 306 348 291 352 0.82 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF534-202 - 674 3.5e-09 36.4 53.4 3 11 0.018 14 5.6 2.0 6 35 333 373 329 374 0.79 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF534-202 - 674 3.5e-09 36.4 53.4 4 11 0.00064 0.52 10.2 0.9 1 37 357 403 357 404 0.83 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF534-202 - 674 3.5e-09 36.4 53.4 5 11 0.00024 0.2 11.6 0.4 4 37 388 431 385 437 0.83 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF534-202 - 674 3.5e-09 36.4 53.4 6 11 0.018 14 5.6 0.6 6 32 446 471 441 472 0.83 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF534-202 - 674 3.5e-09 36.4 53.4 7 11 0.00045 0.37 10.7 0.5 9 38 476 516 471 521 0.85 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF534-202 - 674 3.5e-09 36.4 53.4 8 11 0.0081 6.6 6.7 1.2 9 37 532 571 521 572 0.80 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF534-202 - 674 3.5e-09 36.4 53.4 9 11 0.036 30 4.6 0.1 2 23 554 574 549 584 0.75 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF534-202 - 674 3.5e-09 36.4 53.4 10 11 0.0002 0.16 11.9 0.7 5 37 585 627 577 631 0.83 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF534-202 - 674 3.5e-09 36.4 53.4 11 11 0.05 41 4.2 0.4 10 32 645 667 636 668 0.76 Phorbol esters/diacylglycerol binding domain (C1 domain) zf-C2H2_jaz PF12171.8 27 ZNF534-202 - 674 6.2e-09 35.9 81.4 1 16 0.019 15 6.0 0.5 2 22 227 247 226 247 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF534-202 - 674 6.2e-09 35.9 81.4 2 16 1.5 1.2e+03 -0.0 0.6 7 22 260 275 259 275 0.91 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF534-202 - 674 6.2e-09 35.9 81.4 3 16 0.26 2.1e+02 2.3 0.4 6 22 287 303 286 303 0.91 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF534-202 - 674 6.2e-09 35.9 81.4 4 16 0.51 4.1e+02 1.4 0.2 2 12 311 321 310 330 0.81 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF534-202 - 674 6.2e-09 35.9 81.4 5 16 0.0011 0.88 9.9 0.2 2 21 339 358 338 359 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF534-202 - 674 6.2e-09 35.9 81.4 6 16 0.024 19 5.7 0.0 2 22 367 387 366 387 0.89 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF534-202 - 674 6.2e-09 35.9 81.4 7 16 0.013 11 6.5 0.0 2 22 395 415 394 415 0.90 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF534-202 - 674 6.2e-09 35.9 81.4 8 16 0.051 41 4.6 0.3 2 21 423 442 422 443 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF534-202 - 674 6.2e-09 35.9 81.4 9 16 0.0093 7.6 7.0 0.7 2 22 451 471 450 471 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF534-202 - 674 6.2e-09 35.9 81.4 10 16 0.0032 2.6 8.4 0.4 2 22 479 499 478 499 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF534-202 - 674 6.2e-09 35.9 81.4 11 16 0.27 2.2e+02 2.3 0.6 2 20 507 525 506 527 0.87 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF534-202 - 674 6.2e-09 35.9 81.4 12 16 0.015 12 6.3 0.1 2 22 535 555 534 555 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF534-202 - 674 6.2e-09 35.9 81.4 13 16 0.018 15 6.0 0.1 2 22 563 583 562 583 0.91 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF534-202 - 674 6.2e-09 35.9 81.4 14 16 0.023 19 5.7 0.2 2 22 591 611 590 611 0.91 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF534-202 - 674 6.2e-09 35.9 81.4 15 16 0.0046 3.8 7.9 0.5 2 22 619 639 618 639 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF534-202 - 674 6.2e-09 35.9 81.4 16 16 0.0043 3.5 8.0 0.5 2 21 647 666 646 667 0.92 Zinc-finger double-stranded RNA-binding FAM178 PF14816.6 373 ZNF534-202 - 674 1e-08 34.6 10.2 1 12 0.021 17 4.3 0.1 79 105 245 271 234 286 0.77 Family of unknown function, FAM178 FAM178 PF14816.6 373 ZNF534-202 - 674 1e-08 34.6 10.2 2 12 0.059 48 2.8 0.1 80 106 274 300 268 312 0.82 Family of unknown function, FAM178 FAM178 PF14816.6 373 ZNF534-202 - 674 1e-08 34.6 10.2 3 12 0.014 11 4.8 0.0 77 104 327 354 312 367 0.76 Family of unknown function, FAM178 FAM178 PF14816.6 373 ZNF534-202 - 674 1e-08 34.6 10.2 4 12 0.4 3.3e+02 0.0 0.0 79 102 385 408 376 423 0.82 Family of unknown function, FAM178 FAM178 PF14816.6 373 ZNF534-202 - 674 1e-08 34.6 10.2 5 12 0.12 1e+02 1.7 0.0 81 103 443 465 431 476 0.81 Family of unknown function, FAM178 FAM178 PF14816.6 373 ZNF534-202 - 674 1e-08 34.6 10.2 6 12 0.16 1.3e+02 1.3 0.0 81 102 471 492 464 498 0.86 Family of unknown function, FAM178 FAM178 PF14816.6 373 ZNF534-202 - 674 1e-08 34.6 10.2 7 12 0.0033 2.7 6.9 0.0 75 103 493 521 486 529 0.81 Family of unknown function, FAM178 FAM178 PF14816.6 373 ZNF534-202 - 674 1e-08 34.6 10.2 8 12 0.018 14 4.5 0.0 78 105 524 551 520 563 0.80 Family of unknown function, FAM178 FAM178 PF14816.6 373 ZNF534-202 - 674 1e-08 34.6 10.2 9 12 0.026 21 3.9 0.1 76 110 550 584 543 605 0.74 Family of unknown function, FAM178 FAM178 PF14816.6 373 ZNF534-202 - 674 1e-08 34.6 10.2 10 12 0.16 1.3e+02 1.4 0.0 76 104 578 606 570 621 0.79 Family of unknown function, FAM178 FAM178 PF14816.6 373 ZNF534-202 - 674 1e-08 34.6 10.2 11 12 0.089 73 2.2 0.0 76 110 606 640 595 660 0.75 Family of unknown function, FAM178 FAM178 PF14816.6 373 ZNF534-202 - 674 1e-08 34.6 10.2 12 12 0.36 2.9e+02 0.2 0.0 74 113 632 669 615 673 0.78 Family of unknown function, FAM178 zinc_ribbon_15 PF17032.5 86 ZNF534-202 - 674 3.2e-08 34.2 66.0 1 8 0.025 20 6.0 1.0 35 78 224 267 214 273 0.76 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF534-202 - 674 3.2e-08 34.2 66.0 2 8 0.11 89 3.9 3.5 31 74 276 319 247 325 0.74 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF534-202 - 674 3.2e-08 34.2 66.0 3 8 0.0044 3.6 8.4 1.9 34 74 335 375 319 381 0.84 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF534-202 - 674 3.2e-08 34.2 66.0 4 8 0.0037 3.1 8.6 1.0 30 75 387 432 378 441 0.83 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF534-202 - 674 3.2e-08 34.2 66.0 5 8 0.0072 5.9 7.7 2.7 35 79 448 492 439 497 0.87 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF534-202 - 674 3.2e-08 34.2 66.0 6 8 0.00014 0.12 13.2 1.6 30 78 499 547 496 550 0.88 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF534-202 - 674 3.2e-08 34.2 66.0 7 8 0.00091 0.74 10.6 1.5 33 78 558 603 549 606 0.84 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF534-202 - 674 3.2e-08 34.2 66.0 8 8 0.00015 0.12 13.1 3.7 30 85 611 666 605 667 0.88 zinc-ribbon family # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF534-202.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF534-202.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF534-202.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF534-202.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF534-202.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:08:21 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- KRAB PF01352.27 42 ZNF534-203 - 150 4.9e-26 90.1 0.1 1 1 3.8e-30 6.9e-26 89.6 0.1 2 42 8 48 7 48 0.98 KRAB box # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF534-203.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF534-203.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF534-203.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF534-203.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF534-203.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:08:21 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZNF534-204 - 661 1.6e-112 363.4 117.3 1 18 1.5 1.2e+03 0.2 0.3 7 17 178 188 177 195 0.84 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF534-204 - 661 1.6e-112 363.4 117.3 2 18 0.031 25 5.5 0.0 9 25 208 224 204 225 0.82 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF534-204 - 661 1.6e-112 363.4 117.3 3 18 1e-08 8.2e-06 26.0 0.2 1 25 228 252 228 253 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF534-204 - 661 1.6e-112 363.4 117.3 4 18 8.7e-07 0.00071 19.9 1.0 1 26 256 281 256 281 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF534-204 - 661 1.6e-112 363.4 117.3 5 18 4.2e-11 3.4e-08 33.5 0.9 2 25 285 308 284 308 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF534-204 - 661 1.6e-112 363.4 117.3 6 18 2.7e-09 2.2e-06 27.8 0.6 1 26 312 337 312 337 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF534-204 - 661 1.6e-112 363.4 117.3 7 18 2.1e-09 1.7e-06 28.1 0.5 1 25 340 364 340 365 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF534-204 - 661 1.6e-112 363.4 117.3 8 18 7.1e-11 5.8e-08 32.8 0.7 2 24 369 391 369 392 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF534-204 - 661 1.6e-112 363.4 117.3 9 18 1.3e-08 1.1e-05 25.7 0.8 2 25 397 420 396 421 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF534-204 - 661 1.6e-112 363.4 117.3 10 18 2.4e-10 2e-07 31.1 0.2 1 26 424 449 424 449 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF534-204 - 661 1.6e-112 363.4 117.3 11 18 1.3e-11 1e-08 35.2 2.3 1 25 452 476 452 477 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF534-204 - 661 1.6e-112 363.4 117.3 12 18 8.5e-11 6.9e-08 32.6 0.8 1 25 480 504 480 505 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF534-204 - 661 1.6e-112 363.4 117.3 13 18 9.2e-09 7.5e-06 26.1 0.7 1 25 508 532 508 533 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF534-204 - 661 1.6e-112 363.4 117.3 14 18 2.7e-10 2.2e-07 31.0 1.3 1 25 536 560 536 561 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF534-204 - 661 1.6e-112 363.4 117.3 15 18 5.2e-09 4.3e-06 26.9 2.0 1 25 564 588 564 589 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF534-204 - 661 1.6e-112 363.4 117.3 16 18 1.1e-09 8.7e-07 29.1 2.5 1 25 592 616 592 617 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF534-204 - 661 1.6e-112 363.4 117.3 17 18 5.6e-08 4.6e-05 23.7 0.3 2 25 621 644 620 645 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF534-204 - 661 1.6e-112 363.4 117.3 18 18 0.1 85 3.8 0.0 2 14 649 661 649 661 0.94 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZNF534-204 - 661 5.6e-85 275.3 130.9 1 17 2.3 1.9e+03 -0.4 0.0 7 17 189 202 186 203 0.77 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF534-204 - 661 5.6e-85 275.3 130.9 2 17 1.2e-08 9.6e-06 25.8 0.4 1 23 214 236 214 236 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF534-204 - 661 5.6e-85 275.3 130.9 3 17 1.4e-06 0.0012 19.2 0.3 5 23 246 264 245 264 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF534-204 - 661 5.6e-85 275.3 130.9 4 17 0.00014 0.12 12.9 1.2 5 23 274 292 272 292 0.95 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF534-204 - 661 5.6e-85 275.3 130.9 5 17 3.7e-07 0.0003 21.1 0.7 1 23 298 320 298 320 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF534-204 - 661 5.6e-85 275.3 130.9 6 17 7.3e-08 6e-05 23.3 2.7 1 23 326 348 326 348 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF534-204 - 661 5.6e-85 275.3 130.9 7 17 5.1e-07 0.00041 20.6 0.4 1 23 354 376 354 376 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF534-204 - 661 5.6e-85 275.3 130.9 8 17 2.8e-07 0.00023 21.5 0.3 1 23 382 404 382 404 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF534-204 - 661 5.6e-85 275.3 130.9 9 17 9.8e-09 8e-06 26.0 1.0 1 23 410 432 410 432 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF534-204 - 661 5.6e-85 275.3 130.9 10 17 6.9e-05 0.056 13.9 4.3 1 23 438 460 438 460 0.94 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF534-204 - 661 5.6e-85 275.3 130.9 11 17 3.8e-10 3.1e-07 30.5 1.2 1 23 466 488 466 488 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF534-204 - 661 5.6e-85 275.3 130.9 12 17 1.7e-08 1.4e-05 25.3 1.3 1 23 494 516 494 516 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF534-204 - 661 5.6e-85 275.3 130.9 13 17 2.6e-09 2.1e-06 27.8 2.5 1 23 522 544 522 544 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF534-204 - 661 5.6e-85 275.3 130.9 14 17 2.3e-09 1.9e-06 28.0 1.8 1 23 550 572 550 572 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF534-204 - 661 5.6e-85 275.3 130.9 15 17 1.9e-08 1.6e-05 25.1 3.9 1 23 578 600 578 600 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF534-204 - 661 5.6e-85 275.3 130.9 16 17 1.3e-07 0.00011 22.5 1.2 1 23 606 628 606 628 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF534-204 - 661 5.6e-85 275.3 130.9 17 17 0.00011 0.092 13.2 1.3 1 21 634 654 634 656 0.87 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZNF534-204 - 661 8.6e-46 150.6 122.9 1 17 6.4 5.3e+03 -1.2 0.0 2 18 187 203 186 208 0.78 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF534-204 - 661 8.6e-46 150.6 122.9 2 17 1.7e-05 0.014 16.2 0.4 1 23 214 236 214 237 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF534-204 - 661 8.6e-46 150.6 122.9 3 17 0.0029 2.4 9.2 0.3 5 23 246 264 244 265 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF534-204 - 661 8.6e-46 150.6 122.9 4 17 0.0085 6.9 7.8 0.8 4 23 273 292 270 293 0.77 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF534-204 - 661 8.6e-46 150.6 122.9 5 17 2.8e-05 0.023 15.5 1.1 1 23 298 320 298 321 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF534-204 - 661 8.6e-46 150.6 122.9 6 17 0.00072 0.58 11.1 2.0 3 23 328 348 326 349 0.88 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF534-204 - 661 8.6e-46 150.6 122.9 7 17 3.8e-05 0.031 15.1 0.4 1 23 354 376 354 377 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF534-204 - 661 8.6e-46 150.6 122.9 8 17 2.2e-05 0.018 15.9 0.2 1 23 382 404 382 405 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF534-204 - 661 8.6e-46 150.6 122.9 9 17 4e-06 0.0032 18.2 0.9 1 23 410 432 410 433 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF534-204 - 661 8.6e-46 150.6 122.9 10 17 0.00096 0.78 10.7 3.5 1 23 438 460 438 461 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF534-204 - 661 8.6e-46 150.6 122.9 11 17 7.3e-07 0.00059 20.4 0.8 1 23 466 488 466 489 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF534-204 - 661 8.6e-46 150.6 122.9 12 17 6e-05 0.049 14.5 0.9 1 23 494 516 494 517 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF534-204 - 661 8.6e-46 150.6 122.9 13 17 3e-05 0.024 15.4 1.7 1 23 522 544 522 545 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF534-204 - 661 8.6e-46 150.6 122.9 14 17 1.5e-05 0.012 16.4 1.2 1 23 550 572 550 573 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF534-204 - 661 8.6e-46 150.6 122.9 15 17 3.4e-05 0.027 15.3 2.9 1 23 578 600 578 601 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF534-204 - 661 8.6e-46 150.6 122.9 16 17 2.2e-05 0.018 15.9 0.9 1 23 606 628 606 629 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF534-204 - 661 8.6e-46 150.6 122.9 17 17 0.00031 0.26 12.3 1.3 1 23 634 656 634 657 0.86 C2H2-type zinc finger KRAB PF01352.27 42 ZNF534-204 - 661 3.5e-25 87.4 0.1 1 1 7.6e-28 6.2e-25 86.6 0.1 2 42 8 48 7 48 0.98 KRAB box zf-C2H2_6 PF13912.6 27 ZNF534-204 - 661 5.2e-16 58.2 126.4 1 16 0.14 1.1e+02 2.9 0.6 2 13 214 225 213 227 0.92 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF534-204 - 661 5.2e-16 58.2 126.4 2 16 0.51 4.2e+02 1.1 1.2 6 12 246 252 245 263 0.69 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF534-204 - 661 5.2e-16 58.2 126.4 3 16 0.22 1.8e+02 2.3 0.1 5 12 273 280 273 292 0.86 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF534-204 - 661 5.2e-16 58.2 126.4 4 16 0.00036 0.29 11.2 1.8 2 21 298 317 298 320 0.90 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF534-204 - 661 5.2e-16 58.2 126.4 5 16 0.00057 0.46 10.5 1.8 2 21 326 345 326 350 0.86 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF534-204 - 661 5.2e-16 58.2 126.4 6 16 0.00034 0.27 11.3 0.5 2 24 354 376 354 379 0.86 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF534-204 - 661 5.2e-16 58.2 126.4 7 16 0.0029 2.3 8.3 1.4 2 11 382 391 382 391 0.97 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF534-204 - 661 5.2e-16 58.2 126.4 8 16 8.9e-06 0.0073 16.3 1.1 1 21 409 429 409 432 0.92 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF534-204 - 661 5.2e-16 58.2 126.4 9 16 0.49 4e+02 1.2 1.8 2 12 438 448 438 458 0.87 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF534-204 - 661 5.2e-16 58.2 126.4 10 16 6.1e-05 0.05 13.6 0.9 2 24 466 488 466 491 0.90 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF534-204 - 661 5.2e-16 58.2 126.4 11 16 0.0011 0.91 9.6 3.4 2 25 494 513 493 515 0.76 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF534-204 - 661 5.2e-16 58.2 126.4 12 16 0.002 1.6 8.8 0.3 2 12 522 532 522 541 0.90 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF534-204 - 661 5.2e-16 58.2 126.4 13 16 0.013 11 6.2 3.4 2 13 550 561 550 571 0.81 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF534-204 - 661 5.2e-16 58.2 126.4 14 16 0.0079 6.5 6.9 4.4 2 26 578 598 578 600 0.73 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF534-204 - 661 5.2e-16 58.2 126.4 15 16 0.00016 0.13 12.3 0.3 2 12 606 616 605 625 0.91 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF534-204 - 661 5.2e-16 58.2 126.4 16 16 0.0047 3.9 7.6 1.4 2 12 634 644 634 645 0.89 C2H2-type zinc finger Zn-ribbon_8 PF09723.10 40 ZNF534-204 - 661 7.4e-16 58.0 81.7 1 16 0.45 3.6e+02 1.4 0.0 6 20 186 200 185 208 0.83 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF534-204 - 661 7.4e-16 58.0 81.7 2 16 0.0036 3 8.1 1.3 6 22 214 236 212 249 0.69 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF534-204 - 661 7.4e-16 58.0 81.7 3 16 0.87 7.1e+02 0.4 0.2 9 20 245 262 241 277 0.65 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF534-204 - 661 7.4e-16 58.0 81.7 4 16 0.004 3.2 7.9 1.1 9 34 273 305 269 309 0.70 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF534-204 - 661 7.4e-16 58.0 81.7 5 16 0.0013 1.1 9.5 5.8 6 34 298 333 297 333 0.82 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF534-204 - 661 7.4e-16 58.0 81.7 6 16 0.00024 0.19 11.8 4.0 6 38 326 365 324 366 0.87 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF534-204 - 661 7.4e-16 58.0 81.7 7 16 0.00022 0.18 11.9 4.1 6 34 354 389 353 389 0.86 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF534-204 - 661 7.4e-16 58.0 81.7 8 16 0.0024 1.9 8.6 5.1 6 35 382 418 380 420 0.83 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF534-204 - 661 7.4e-16 58.0 81.7 9 16 0.023 19 5.5 6.4 6 34 410 445 409 450 0.78 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF534-204 - 661 7.4e-16 58.0 81.7 10 16 0.03 24 5.1 0.7 6 17 438 449 436 459 0.79 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF534-204 - 661 7.4e-16 58.0 81.7 11 16 0.00025 0.21 11.8 4.1 6 33 466 500 465 500 0.85 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF534-204 - 661 7.4e-16 58.0 81.7 12 16 4e-05 0.032 14.3 3.5 6 38 494 533 493 535 0.86 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF534-204 - 661 7.4e-16 58.0 81.7 13 16 0.013 10 6.3 0.3 6 16 522 532 521 541 0.85 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF534-204 - 661 7.4e-16 58.0 81.7 14 16 1.9e-05 0.016 15.4 1.3 6 34 550 585 549 591 0.85 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF534-204 - 661 7.4e-16 58.0 81.7 15 16 0.0022 1.8 8.7 4.0 6 34 606 641 605 645 0.78 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF534-204 - 661 7.4e-16 58.0 81.7 16 16 0.0084 6.9 6.9 0.5 6 17 634 645 632 657 0.84 Zinc ribbon domain zf_UBZ PF18439.1 32 ZNF534-204 - 661 2.4e-11 43.0 64.3 1 16 0.00038 0.31 10.7 0.1 2 21 213 233 212 233 0.92 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF534-204 - 661 2.4e-11 43.0 64.3 2 16 1.4 1.1e+03 -0.7 0.1 7 21 246 261 245 261 0.82 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF534-204 - 661 2.4e-11 43.0 64.3 3 16 0.51 4.2e+02 0.7 0.1 7 18 274 286 273 289 0.76 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF534-204 - 661 2.4e-11 43.0 64.3 4 16 0.0036 2.9 7.6 0.3 3 15 298 310 296 317 0.78 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF534-204 - 661 2.4e-11 43.0 64.3 5 16 0.0066 5.4 6.7 0.3 3 21 326 345 324 345 0.84 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF534-204 - 661 2.4e-11 43.0 64.3 6 16 0.077 63 3.3 0.1 3 13 354 364 352 368 0.87 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF534-204 - 661 2.4e-11 43.0 64.3 7 16 0.033 27 4.5 0.1 3 13 382 392 380 400 0.83 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF534-204 - 661 2.4e-11 43.0 64.3 8 16 0.04 33 4.2 0.3 3 14 410 421 408 429 0.75 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF534-204 - 661 2.4e-11 43.0 64.3 9 16 0.4 3.3e+02 1.0 0.1 3 12 438 447 436 454 0.85 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF534-204 - 661 2.4e-11 43.0 64.3 10 16 0.0028 2.3 7.9 0.1 3 20 466 484 464 485 0.86 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF534-204 - 661 2.4e-11 43.0 64.3 11 16 0.00096 0.78 9.4 0.2 3 24 494 516 492 517 0.91 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF534-204 - 661 2.4e-11 43.0 64.3 12 16 0.046 37 4.0 0.1 3 12 522 531 520 537 0.84 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF534-204 - 661 2.4e-11 43.0 64.3 13 16 0.013 10 5.8 0.1 3 15 550 562 548 568 0.83 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF534-204 - 661 2.4e-11 43.0 64.3 14 16 0.051 42 3.9 0.2 4 15 579 590 576 596 0.81 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF534-204 - 661 2.4e-11 43.0 64.3 15 16 0.017 14 5.4 0.1 3 20 606 624 604 625 0.81 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF534-204 - 661 2.4e-11 43.0 64.3 16 16 0.0097 7.9 6.2 0.1 3 15 634 646 632 652 0.84 Ubiquitin-Binding Zinc Finger zf-C2H2_11 PF16622.5 29 ZNF534-204 - 661 1.2e-09 37.8 86.5 1 15 0.00094 0.77 9.6 0.2 4 26 213 235 211 236 0.88 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF534-204 - 661 1.2e-09 37.8 86.5 2 15 0.21 1.7e+02 2.1 0.4 9 26 274 291 273 292 0.93 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF534-204 - 661 1.2e-09 37.8 86.5 3 15 0.00031 0.26 11.1 0.4 5 26 298 319 295 320 0.93 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF534-204 - 661 1.2e-09 37.8 86.5 4 15 0.3 2.5e+02 1.6 0.3 7 23 328 344 325 348 0.85 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF534-204 - 661 1.2e-09 37.8 86.5 5 15 0.00055 0.45 10.3 0.2 5 25 354 374 352 376 0.92 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF534-204 - 661 1.2e-09 37.8 86.5 6 15 0.0029 2.4 8.0 0.0 5 26 382 403 379 404 0.93 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF534-204 - 661 1.2e-09 37.8 86.5 7 15 0.26 2.1e+02 1.8 0.8 5 20 410 425 409 432 0.71 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF534-204 - 661 1.2e-09 37.8 86.5 8 15 0.027 22 4.9 1.5 6 26 439 459 436 460 0.94 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF534-204 - 661 1.2e-09 37.8 86.5 9 15 4e-05 0.033 14.0 0.1 5 26 466 487 463 488 0.94 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF534-204 - 661 1.2e-09 37.8 86.5 10 15 0.12 97 2.9 0.4 5 26 494 515 493 516 0.82 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF534-204 - 661 1.2e-09 37.8 86.5 11 15 0.17 1.3e+02 2.4 0.4 7 24 524 541 521 544 0.88 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF534-204 - 661 1.2e-09 37.8 86.5 12 15 0.0013 1 9.2 0.4 7 26 552 571 549 572 0.93 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF534-204 - 661 1.2e-09 37.8 86.5 13 15 0.00074 0.61 9.9 0.6 5 26 578 599 575 600 0.92 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF534-204 - 661 1.2e-09 37.8 86.5 14 15 0.24 1.9e+02 1.9 0.7 5 26 606 627 605 628 0.91 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF534-204 - 661 1.2e-09 37.8 86.5 15 15 0.096 78 3.2 1.6 7 26 636 655 634 656 0.91 zinc-finger C2H2-type C1_1 PF00130.22 53 ZNF534-204 - 661 3.1e-09 36.6 53.6 1 11 0.061 50 3.9 0.1 9 21 211 223 204 239 0.71 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF534-204 - 661 3.1e-09 36.6 53.6 2 11 0.017 14 5.7 3.2 7 38 293 335 278 339 0.82 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF534-204 - 661 3.1e-09 36.6 53.6 3 11 0.019 16 5.5 1.7 6 34 320 359 316 360 0.79 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF534-204 - 661 3.1e-09 36.6 53.6 4 11 0.00066 0.54 10.2 1.0 1 37 344 390 344 391 0.83 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF534-204 - 661 3.1e-09 36.6 53.6 5 11 0.00024 0.19 11.6 0.4 4 36 375 417 371 423 0.83 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF534-204 - 661 3.1e-09 36.6 53.6 6 11 0.017 14 5.7 0.6 6 32 433 458 428 459 0.83 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF534-204 - 661 3.1e-09 36.6 53.6 7 11 0.00044 0.36 10.8 0.5 9 38 463 503 458 508 0.85 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF534-204 - 661 3.1e-09 36.6 53.6 8 11 0.008 6.5 6.7 1.3 9 37 519 558 508 559 0.80 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF534-204 - 661 3.1e-09 36.6 53.6 9 11 0.036 29 4.6 0.1 2 23 541 561 536 571 0.75 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF534-204 - 661 3.1e-09 36.6 53.6 10 11 0.00019 0.15 11.9 0.6 5 37 572 614 564 618 0.83 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF534-204 - 661 3.1e-09 36.6 53.6 11 11 0.049 40 4.2 0.4 10 32 632 654 623 655 0.76 Phorbol esters/diacylglycerol binding domain (C1 domain) zf-C2H2_jaz PF12171.8 27 ZNF534-204 - 661 4.4e-09 36.4 81.4 1 16 0.018 15 6.0 0.5 2 22 214 234 213 234 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF534-204 - 661 4.4e-09 36.4 81.4 2 16 1.4 1.2e+03 -0.0 0.6 7 22 247 262 246 262 0.91 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF534-204 - 661 4.4e-09 36.4 81.4 3 16 0.25 2.1e+02 2.4 0.4 6 22 274 290 273 290 0.91 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF534-204 - 661 4.4e-09 36.4 81.4 4 16 0.5 4e+02 1.5 0.2 2 12 298 308 297 317 0.81 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF534-204 - 661 4.4e-09 36.4 81.4 5 16 0.0011 0.86 10.0 0.2 2 21 326 345 325 346 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF534-204 - 661 4.4e-09 36.4 81.4 6 16 0.023 19 5.7 0.0 2 22 354 374 353 374 0.89 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF534-204 - 661 4.4e-09 36.4 81.4 7 16 0.013 11 6.5 0.0 2 22 382 402 381 402 0.90 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF534-204 - 661 4.4e-09 36.4 81.4 8 16 0.049 40 4.6 0.3 2 21 410 429 409 430 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF534-204 - 661 4.4e-09 36.4 81.4 9 16 0.0091 7.4 7.0 0.7 2 22 438 458 437 458 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF534-204 - 661 4.4e-09 36.4 81.4 10 16 0.0031 2.6 8.5 0.4 2 22 466 486 465 486 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF534-204 - 661 4.4e-09 36.4 81.4 11 16 0.26 2.2e+02 2.3 0.6 2 20 494 512 493 514 0.87 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF534-204 - 661 4.4e-09 36.4 81.4 12 16 0.014 12 6.3 0.1 2 22 522 542 521 542 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF534-204 - 661 4.4e-09 36.4 81.4 13 16 0.018 15 6.0 0.1 2 22 550 570 549 570 0.91 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF534-204 - 661 4.4e-09 36.4 81.4 14 16 0.022 18 5.7 0.2 2 22 578 598 577 598 0.91 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF534-204 - 661 4.4e-09 36.4 81.4 15 16 0.0045 3.7 8.0 0.5 2 22 606 626 605 626 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF534-204 - 661 4.4e-09 36.4 81.4 16 16 0.0042 3.4 8.1 0.5 2 21 634 653 633 654 0.92 Zinc-finger double-stranded RNA-binding FAM178 PF14816.6 373 ZNF534-204 - 661 7e-09 35.1 10.0 1 12 0.036 29 3.5 0.1 79 103 232 256 221 263 0.81 Family of unknown function, FAM178 FAM178 PF14816.6 373 ZNF534-204 - 661 7e-09 35.1 10.0 2 12 0.056 46 2.8 0.1 80 106 261 287 255 300 0.82 Family of unknown function, FAM178 FAM178 PF14816.6 373 ZNF534-204 - 661 7e-09 35.1 10.0 3 12 0.013 11 4.9 0.0 77 104 314 341 299 355 0.76 Family of unknown function, FAM178 FAM178 PF14816.6 373 ZNF534-204 - 661 7e-09 35.1 10.0 4 12 0.39 3.2e+02 0.1 0.0 79 102 372 395 363 410 0.82 Family of unknown function, FAM178 FAM178 PF14816.6 373 ZNF534-204 - 661 7e-09 35.1 10.0 5 12 0.13 1.1e+02 1.6 0.0 81 103 430 452 418 460 0.81 Family of unknown function, FAM178 FAM178 PF14816.6 373 ZNF534-204 - 661 7e-09 35.1 10.0 6 12 0.18 1.4e+02 1.2 0.0 81 102 458 479 450 483 0.87 Family of unknown function, FAM178 FAM178 PF14816.6 373 ZNF534-204 - 661 7e-09 35.1 10.0 7 12 0.0032 2.6 6.9 0.0 75 103 480 508 473 516 0.81 Family of unknown function, FAM178 FAM178 PF14816.6 373 ZNF534-204 - 661 7e-09 35.1 10.0 8 12 0.017 14 4.5 0.0 78 105 511 538 507 550 0.80 Family of unknown function, FAM178 FAM178 PF14816.6 373 ZNF534-204 - 661 7e-09 35.1 10.0 9 12 0.031 25 3.7 0.0 75 109 536 570 530 582 0.76 Family of unknown function, FAM178 FAM178 PF14816.6 373 ZNF534-204 - 661 7e-09 35.1 10.0 10 12 0.059 48 2.8 0.1 81 108 570 597 557 632 0.53 Family of unknown function, FAM178 FAM178 PF14816.6 373 ZNF534-204 - 661 7e-09 35.1 10.0 11 12 0.092 75 2.1 0.0 76 110 593 627 585 647 0.75 Family of unknown function, FAM178 FAM178 PF14816.6 373 ZNF534-204 - 661 7e-09 35.1 10.0 12 12 0.31 2.5e+02 0.4 0.0 74 112 619 655 600 660 0.71 Family of unknown function, FAM178 zinc_ribbon_15 PF17032.5 86 ZNF534-204 - 661 2.3e-08 34.6 65.8 1 8 0.027 22 5.9 1.0 35 78 211 254 205 259 0.74 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF534-204 - 661 2.3e-08 34.6 65.8 2 8 0.12 1e+02 3.8 3.7 31 74 263 306 234 312 0.74 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF534-204 - 661 2.3e-08 34.6 65.8 3 8 0.0035 2.8 8.7 1.3 35 74 323 362 315 368 0.84 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF534-204 - 661 2.3e-08 34.6 65.8 4 8 0.0032 2.6 8.8 0.9 30 75 374 419 363 425 0.83 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF534-204 - 661 2.3e-08 34.6 65.8 5 8 0.007 5.7 7.8 2.6 35 79 435 479 428 484 0.87 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF534-204 - 661 2.3e-08 34.6 65.8 6 8 0.00013 0.11 13.3 1.6 30 78 486 534 483 537 0.88 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF534-204 - 661 2.3e-08 34.6 65.8 7 8 0.0009 0.73 10.6 1.7 32 78 544 590 532 596 0.85 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF534-204 - 661 2.3e-08 34.6 65.8 8 8 0.00013 0.11 13.3 3.6 30 85 598 653 593 654 0.87 zinc-ribbon family # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF534-204.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF534-204.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF534-204.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF534-204.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF534-204.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:08:22 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- KRAB PF01352.27 42 ZNF534-205 - 193 7e-26 89.6 0.1 1 1 6e-30 1.1e-25 89.0 0.1 2 42 8 48 7 48 0.98 KRAB box # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF534-205.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF534-205.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF534-205.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF534-205.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF534-205.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:08:22 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZNF540-201 - 660 5.6e-121 390.1 145.5 1 18 0.037 35 5.0 0.5 13 26 178 198 162 198 0.63 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF540-201 - 660 5.6e-121 390.1 145.5 2 18 7.3e-07 0.00069 19.9 3.8 2 26 202 226 201 226 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF540-201 - 660 5.6e-121 390.1 145.5 3 18 2.9e-11 2.7e-08 33.8 1.0 2 25 230 253 229 253 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF540-201 - 660 5.6e-121 390.1 145.5 4 18 1.5e-10 1.4e-07 31.6 2.0 2 24 258 280 257 282 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF540-201 - 660 5.6e-121 390.1 145.5 5 18 1.3e-09 1.3e-06 28.6 1.4 2 24 286 308 285 308 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF540-201 - 660 5.6e-121 390.1 145.5 6 18 2.3e-10 2.2e-07 31.0 3.0 2 25 314 337 313 337 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF540-201 - 660 5.6e-121 390.1 145.5 7 18 2.5e-11 2.4e-08 34.1 1.3 2 24 342 364 341 365 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF540-201 - 660 5.6e-121 390.1 145.5 8 18 1.8e-09 1.7e-06 28.2 2.3 2 25 370 393 369 393 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF540-201 - 660 5.6e-121 390.1 145.5 9 18 2.8e-09 2.6e-06 27.6 0.6 2 25 398 421 397 422 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF540-201 - 660 5.6e-121 390.1 145.5 10 18 1.4e-11 1.3e-08 34.8 0.4 1 24 425 448 425 448 0.97 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF540-201 - 660 5.6e-121 390.1 145.5 11 18 2.6e-10 2.5e-07 30.8 1.3 2 24 454 476 454 477 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF540-201 - 660 5.6e-121 390.1 145.5 12 18 4.6e-06 0.0044 17.4 1.5 5 24 485 504 482 505 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF540-201 - 660 5.6e-121 390.1 145.5 13 18 1.6e-11 1.5e-08 34.6 1.0 2 24 510 532 509 534 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF540-201 - 660 5.6e-121 390.1 145.5 14 18 7.3e-09 6.9e-06 26.3 0.8 1 25 537 561 537 562 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF540-201 - 660 5.6e-121 390.1 145.5 15 18 5.7e-10 5.4e-07 29.8 1.9 3 25 567 589 565 590 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF540-201 - 660 5.6e-121 390.1 145.5 16 18 1.6e-11 1.5e-08 34.6 0.3 1 24 593 616 593 617 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF540-201 - 660 5.6e-121 390.1 145.5 17 18 1.1e-11 1e-08 35.2 2.0 1 25 621 645 621 646 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF540-201 - 660 5.6e-121 390.1 145.5 18 18 3.6 3.4e+03 -1.2 1.1 1 10 649 658 649 659 0.85 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZNF540-201 - 660 3.8e-77 250.7 134.5 1 17 2e-05 0.019 15.4 1.4 1 23 187 209 187 209 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF540-201 - 660 3.8e-77 250.7 134.5 2 17 1.2e-06 0.0011 19.3 6.0 2 23 216 237 215 237 0.95 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF540-201 - 660 3.8e-77 250.7 134.5 3 17 6.5e-07 0.00061 20.1 0.6 1 23 243 265 243 265 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF540-201 - 660 3.8e-77 250.7 134.5 4 17 3.8e-05 0.036 14.5 1.9 1 23 271 293 271 293 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF540-201 - 660 3.8e-77 250.7 134.5 5 17 0.00022 0.21 12.1 0.5 1 23 299 321 299 321 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF540-201 - 660 3.8e-77 250.7 134.5 6 17 7.4e-08 7e-05 23.1 1.1 1 23 327 349 327 349 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF540-201 - 660 3.8e-77 250.7 134.5 7 17 5.3e-07 0.0005 20.4 2.3 1 23 355 377 355 377 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF540-201 - 660 3.8e-77 250.7 134.5 8 17 2.4e-07 0.00023 21.5 0.6 1 23 383 405 383 405 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF540-201 - 660 3.8e-77 250.7 134.5 9 17 1.6e-06 0.0015 18.8 0.2 1 23 411 433 411 433 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF540-201 - 660 3.8e-77 250.7 134.5 10 17 7e-06 0.0066 16.8 0.3 1 23 439 461 439 461 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF540-201 - 660 3.8e-77 250.7 134.5 11 17 7.7e-06 0.0073 16.7 0.9 1 23 467 489 467 489 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF540-201 - 660 3.8e-77 250.7 134.5 12 17 1.1e-05 0.01 16.2 1.9 1 23 495 517 495 517 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF540-201 - 660 3.8e-77 250.7 134.5 13 17 7.6e-09 7.2e-06 26.2 0.4 1 23 523 545 523 545 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF540-201 - 660 3.8e-77 250.7 134.5 14 17 4e-08 3.8e-05 23.9 1.1 1 23 551 573 551 573 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF540-201 - 660 3.8e-77 250.7 134.5 15 17 2.6e-09 2.4e-06 27.7 0.5 1 23 579 601 579 601 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF540-201 - 660 3.8e-77 250.7 134.5 16 17 6.4e-08 6.1e-05 23.3 1.6 1 23 607 629 607 629 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF540-201 - 660 3.8e-77 250.7 134.5 17 17 1.5e-06 0.0014 18.9 4.8 1 23 635 657 635 657 0.99 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZNF540-201 - 660 1e-43 144.2 127.7 1 17 0.0013 1.2 10.1 0.9 3 23 189 209 187 210 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF540-201 - 660 1e-43 144.2 127.7 2 17 0.0053 5 8.2 5.6 2 23 216 237 215 238 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF540-201 - 660 1e-43 144.2 127.7 3 17 7.7e-06 0.0073 17.1 0.5 1 23 243 265 243 266 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF540-201 - 660 1e-43 144.2 127.7 4 17 0.0003 0.28 12.1 1.3 1 23 271 293 271 294 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF540-201 - 660 1e-43 144.2 127.7 5 17 0.0016 1.5 9.8 0.7 1 23 299 321 299 322 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF540-201 - 660 1e-43 144.2 127.7 6 17 8.1e-06 0.0076 17.0 1.3 1 23 327 349 327 350 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF540-201 - 660 1e-43 144.2 127.7 7 17 8e-05 0.075 13.9 1.1 1 23 355 377 355 378 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF540-201 - 660 1e-43 144.2 127.7 8 17 1.6e-05 0.015 16.1 0.4 1 23 383 405 383 406 0.91 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF540-201 - 660 1e-43 144.2 127.7 9 17 2.5e-05 0.024 15.5 0.3 1 23 411 433 411 434 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF540-201 - 660 1e-43 144.2 127.7 10 17 0.0021 2 9.5 0.4 1 23 439 461 439 462 0.88 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF540-201 - 660 1e-43 144.2 127.7 11 17 0.00025 0.23 12.4 0.8 1 23 467 489 467 490 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF540-201 - 660 1e-43 144.2 127.7 12 17 0.0063 5.9 8.0 1.3 1 23 495 517 495 518 0.88 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF540-201 - 660 1e-43 144.2 127.7 13 17 9.8e-06 0.0092 16.7 0.3 1 23 523 545 523 546 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF540-201 - 660 1e-43 144.2 127.7 14 17 7.3e-05 0.069 14.0 0.7 3 23 553 573 551 574 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF540-201 - 660 1e-43 144.2 127.7 15 17 5.9e-06 0.0056 17.4 0.4 1 23 579 601 579 602 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF540-201 - 660 1e-43 144.2 127.7 16 17 0.00015 0.14 13.1 1.3 1 23 607 629 607 630 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF540-201 - 660 1e-43 144.2 127.7 17 17 2.7e-05 0.025 15.4 3.6 1 23 635 657 635 658 0.97 C2H2-type zinc finger KRAB PF01352.27 42 ZNF540-201 - 660 5.4e-26 90.0 0.3 1 1 1.1e-28 1.1e-25 89.0 0.3 1 42 5 46 5 46 0.99 KRAB box zf-C2H2_6 PF13912.6 27 ZNF540-201 - 660 2.7e-23 81.4 132.5 1 17 0.013 12 6.0 1.2 2 22 187 207 186 211 0.82 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF540-201 - 660 2.7e-23 81.4 132.5 2 17 0.075 71 3.6 1.6 3 15 216 228 216 238 0.77 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF540-201 - 660 2.7e-23 81.4 132.5 3 17 3.4e-05 0.032 14.2 0.6 2 24 243 265 243 267 0.87 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF540-201 - 660 2.7e-23 81.4 132.5 4 17 0.021 20 5.3 1.5 2 24 271 293 271 296 0.89 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF540-201 - 660 2.7e-23 81.4 132.5 5 17 8.2e-05 0.077 13.0 0.7 2 12 299 309 298 310 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF540-201 - 660 2.7e-23 81.4 132.5 6 17 0.0012 1.1 9.3 1.3 2 12 327 337 327 347 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF540-201 - 660 2.7e-23 81.4 132.5 7 17 0.00023 0.22 11.6 4.4 2 24 355 377 355 380 0.90 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF540-201 - 660 2.7e-23 81.4 132.5 8 17 7.6e-05 0.072 13.1 0.5 2 12 383 393 383 405 0.84 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF540-201 - 660 2.7e-23 81.4 132.5 9 17 0.00066 0.62 10.1 0.3 2 24 411 433 411 436 0.88 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF540-201 - 660 2.7e-23 81.4 132.5 10 17 0.00099 0.93 9.6 0.2 2 11 439 448 439 461 0.87 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF540-201 - 660 2.7e-23 81.4 132.5 11 17 0.00032 0.3 11.1 1.3 2 12 467 477 467 477 0.95 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF540-201 - 660 2.7e-23 81.4 132.5 12 17 0.15 1.5e+02 2.6 1.0 2 12 495 505 495 518 0.79 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF540-201 - 660 2.7e-23 81.4 132.5 13 17 0.00037 0.35 10.9 0.8 2 24 523 545 523 547 0.88 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF540-201 - 660 2.7e-23 81.4 132.5 14 17 0.0013 1.2 9.2 1.0 2 12 551 561 551 562 0.89 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF540-201 - 660 2.7e-23 81.4 132.5 15 17 2.3e-05 0.022 14.8 0.3 2 24 579 601 579 604 0.89 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF540-201 - 660 2.7e-23 81.4 132.5 16 17 0.002 1.9 8.6 2.6 2 24 607 625 607 628 0.77 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF540-201 - 660 2.7e-23 81.4 132.5 17 17 0.0022 2.1 8.4 5.4 2 24 635 657 635 658 0.96 C2H2-type zinc finger Zn-ribbon_8 PF09723.10 40 ZNF540-201 - 660 3.2e-22 78.3 89.9 1 14 0.014 14 5.9 0.1 21 36 179 196 169 200 0.58 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF540-201 - 660 3.2e-22 78.3 89.9 2 14 0.00095 0.89 9.7 4.5 8 34 189 222 184 226 0.91 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF540-201 - 660 3.2e-22 78.3 89.9 3 14 0.093 88 3.3 1.6 7 16 216 225 215 232 0.87 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF540-201 - 660 3.2e-22 78.3 89.9 4 14 4.2e-06 0.004 17.2 1.7 6 34 243 278 242 284 0.92 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF540-201 - 660 3.2e-22 78.3 89.9 5 14 0.00012 0.12 12.6 6.7 6 34 299 334 298 337 0.81 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF540-201 - 660 3.2e-22 78.3 89.9 6 14 9.9e-05 0.093 12.9 6.6 6 36 327 364 325 368 0.92 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF540-201 - 660 3.2e-22 78.3 89.9 7 14 0.0045 4.2 7.6 0.6 6 16 355 365 352 377 0.89 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF540-201 - 660 3.2e-22 78.3 89.9 8 14 0.0039 3.7 7.8 3.8 6 33 383 417 382 420 0.65 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF540-201 - 660 3.2e-22 78.3 89.9 9 14 0.0031 2.9 8.1 2.6 6 34 411 446 408 453 0.83 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF540-201 - 660 3.2e-22 78.3 89.9 10 14 0.00026 0.25 11.5 0.1 6 22 467 483 466 490 0.86 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF540-201 - 660 3.2e-22 78.3 89.9 11 14 5.3e-06 0.005 16.9 2.1 6 36 495 532 494 535 0.90 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF540-201 - 660 3.2e-22 78.3 89.9 12 14 1.7e-05 0.016 15.3 4.3 6 38 551 590 550 592 0.90 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF540-201 - 660 3.2e-22 78.3 89.9 13 14 5.5e-06 0.0052 16.9 3.6 6 35 579 615 578 617 0.91 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF540-201 - 660 3.2e-22 78.3 89.9 14 14 6e-05 0.056 13.6 2.8 6 37 607 645 606 647 0.91 Zinc ribbon domain zf_UBZ PF18439.1 32 ZNF540-201 - 660 3.5e-14 52.1 75.8 1 17 0.17 1.6e+02 2.0 0.1 4 13 188 197 186 206 0.78 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF540-201 - 660 3.5e-14 52.1 75.8 2 17 0.0021 2 8.1 1.3 4 24 216 237 213 238 0.86 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF540-201 - 660 3.5e-14 52.1 75.8 3 17 0.0039 3.6 7.2 0.2 3 20 243 261 241 262 0.79 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF540-201 - 660 3.5e-14 52.1 75.8 4 17 0.098 92 2.8 0.1 3 20 271 289 269 290 0.81 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF540-201 - 660 3.5e-14 52.1 75.8 5 17 0.0029 2.8 7.6 0.3 2 20 298 317 297 318 0.80 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF540-201 - 660 3.5e-14 52.1 75.8 6 17 0.0093 8.7 6.0 0.6 3 20 327 345 325 346 0.79 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF540-201 - 660 3.5e-14 52.1 75.8 7 17 0.0023 2.2 8.0 0.1 3 20 355 373 353 374 0.89 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF540-201 - 660 3.5e-14 52.1 75.8 8 17 0.0034 3.2 7.4 0.1 3 20 383 401 381 402 0.82 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF540-201 - 660 3.5e-14 52.1 75.8 9 17 2.8 2.6e+03 -1.9 0.0 3 15 411 423 410 430 0.75 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF540-201 - 660 3.5e-14 52.1 75.8 10 17 0.011 10 5.8 0.1 3 21 439 458 437 458 0.79 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF540-201 - 660 3.5e-14 52.1 75.8 11 17 0.013 12 5.6 0.1 3 13 467 477 465 485 0.84 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF540-201 - 660 3.5e-14 52.1 75.8 12 17 0.018 17 5.1 0.0 3 20 495 513 493 514 0.81 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF540-201 - 660 3.5e-14 52.1 75.8 13 17 0.0045 4.2 7.0 0.1 3 20 523 541 521 542 0.86 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF540-201 - 660 3.5e-14 52.1 75.8 14 17 7e-05 0.066 12.8 0.2 3 21 551 570 549 570 0.95 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF540-201 - 660 3.5e-14 52.1 75.8 15 17 0.0039 3.7 7.2 0.1 3 18 579 595 577 598 0.80 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF540-201 - 660 3.5e-14 52.1 75.8 16 17 0.0024 2.2 7.9 0.4 3 21 607 626 605 626 0.92 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF540-201 - 660 3.5e-14 52.1 75.8 17 17 6.3 6e+03 -3.0 0.3 3 12 635 644 634 647 0.84 Ubiquitin-Binding Zinc Finger XPA_N PF01286.18 32 ZNF540-201 - 660 2.3e-13 49.9 80.4 1 17 0.0082 7.7 6.7 0.1 3 13 188 198 186 203 0.83 XPA protein N-terminal XPA_N PF01286.18 32 ZNF540-201 - 660 2.3e-13 49.9 80.4 2 17 0.0033 3.1 7.9 1.0 3 15 216 228 215 234 0.91 XPA protein N-terminal XPA_N PF01286.18 32 ZNF540-201 - 660 2.3e-13 49.9 80.4 3 17 0.0074 7 6.8 0.2 3 12 244 253 242 254 0.89 XPA protein N-terminal XPA_N PF01286.18 32 ZNF540-201 - 660 2.3e-13 49.9 80.4 4 17 0.31 2.9e+02 1.6 0.3 3 11 272 280 270 282 0.88 XPA protein N-terminal XPA_N PF01286.18 32 ZNF540-201 - 660 2.3e-13 49.9 80.4 5 17 0.014 14 5.9 0.6 3 18 300 315 299 318 0.86 XPA protein N-terminal XPA_N PF01286.18 32 ZNF540-201 - 660 2.3e-13 49.9 80.4 6 17 0.013 12 6.0 0.2 3 12 328 337 326 338 0.88 XPA protein N-terminal XPA_N PF01286.18 32 ZNF540-201 - 660 2.3e-13 49.9 80.4 7 17 3.7e-05 0.035 14.2 0.2 3 18 356 371 354 374 0.91 XPA protein N-terminal XPA_N PF01286.18 32 ZNF540-201 - 660 2.3e-13 49.9 80.4 8 17 0.019 17 5.5 0.3 3 11 384 392 382 394 0.88 XPA protein N-terminal XPA_N PF01286.18 32 ZNF540-201 - 660 2.3e-13 49.9 80.4 9 17 0.23 2.1e+02 2.0 0.2 20 27 411 418 408 423 0.71 XPA protein N-terminal XPA_N PF01286.18 32 ZNF540-201 - 660 2.3e-13 49.9 80.4 10 17 0.0039 3.7 7.7 0.1 3 12 440 449 438 457 0.85 XPA protein N-terminal XPA_N PF01286.18 32 ZNF540-201 - 660 2.3e-13 49.9 80.4 11 17 0.013 12 6.0 0.2 3 11 468 476 466 478 0.89 XPA protein N-terminal XPA_N PF01286.18 32 ZNF540-201 - 660 2.3e-13 49.9 80.4 12 17 0.051 48 4.1 0.1 3 18 496 511 494 513 0.84 XPA protein N-terminal XPA_N PF01286.18 32 ZNF540-201 - 660 2.3e-13 49.9 80.4 13 17 0.012 11 6.1 0.2 3 11 524 532 522 534 0.89 XPA protein N-terminal XPA_N PF01286.18 32 ZNF540-201 - 660 2.3e-13 49.9 80.4 14 17 0.022 21 5.3 0.3 3 12 552 561 550 562 0.88 XPA protein N-terminal XPA_N PF01286.18 32 ZNF540-201 - 660 2.3e-13 49.9 80.4 15 17 0.0023 2.2 8.4 0.1 3 14 580 591 578 592 0.90 XPA protein N-terminal XPA_N PF01286.18 32 ZNF540-201 - 660 2.3e-13 49.9 80.4 16 17 0.041 39 4.4 0.1 3 12 608 617 606 625 0.78 XPA protein N-terminal XPA_N PF01286.18 32 ZNF540-201 - 660 2.3e-13 49.9 80.4 17 17 0.4 3.8e+02 1.2 0.1 20 27 635 642 633 652 0.75 XPA protein N-terminal zf-C2H2_jaz PF12171.8 27 ZNF540-201 - 660 2.8e-13 49.8 85.7 1 17 0.0023 2.1 8.7 1.3 2 22 187 207 186 207 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF540-201 - 660 2.8e-13 49.8 85.7 2 17 0.058 55 4.2 0.7 4 22 217 235 216 235 0.91 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF540-201 - 660 2.8e-13 49.8 85.7 3 17 0.029 28 5.2 0.1 2 11 243 252 242 253 0.91 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF540-201 - 660 2.8e-13 49.8 85.7 4 17 0.0018 1.7 9.0 0.2 2 22 271 291 270 291 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF540-201 - 660 2.8e-13 49.8 85.7 5 17 0.053 50 4.3 1.4 2 21 299 318 298 319 0.77 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF540-201 - 660 2.8e-13 49.8 85.7 6 17 0.11 1e+02 3.4 0.5 2 12 327 337 326 347 0.84 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF540-201 - 660 2.8e-13 49.8 85.7 7 17 0.0093 8.7 6.8 0.2 2 23 355 376 354 378 0.76 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF540-201 - 660 2.8e-13 49.8 85.7 8 17 0.0061 5.8 7.3 0.1 2 21 383 402 382 403 0.84 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF540-201 - 660 2.8e-13 49.8 85.7 9 17 0.022 21 5.6 0.1 2 15 411 424 410 429 0.75 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF540-201 - 660 2.8e-13 49.8 85.7 10 17 0.14 1.4e+02 3.0 0.1 2 11 439 448 438 459 0.80 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF540-201 - 660 2.8e-13 49.8 85.7 11 17 0.016 15 6.0 0.1 2 12 467 477 466 487 0.81 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF540-201 - 660 2.8e-13 49.8 85.7 12 17 1.1 1.1e+03 0.1 0.3 2 11 495 504 494 505 0.89 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF540-201 - 660 2.8e-13 49.8 85.7 13 17 0.00014 0.14 12.5 0.0 2 22 523 543 522 543 0.95 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF540-201 - 660 2.8e-13 49.8 85.7 14 17 0.00019 0.18 12.1 0.1 2 22 551 571 550 571 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF540-201 - 660 2.8e-13 49.8 85.7 15 17 0.0033 3.1 8.2 0.0 2 22 579 599 578 599 0.91 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF540-201 - 660 2.8e-13 49.8 85.7 16 17 0.17 1.6e+02 2.7 0.2 2 21 607 626 606 627 0.80 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF540-201 - 660 2.8e-13 49.8 85.7 17 17 0.098 93 3.5 2.1 2 12 635 645 634 658 0.73 Zinc-finger double-stranded RNA-binding # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF540-201.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF540-201.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF540-201.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF540-201.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF540-201.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:08:23 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZNF540-202 - 660 5.6e-121 390.1 145.5 1 18 0.037 35 5.0 0.5 13 26 178 198 162 198 0.63 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF540-202 - 660 5.6e-121 390.1 145.5 2 18 7.3e-07 0.00069 19.9 3.8 2 26 202 226 201 226 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF540-202 - 660 5.6e-121 390.1 145.5 3 18 2.9e-11 2.7e-08 33.8 1.0 2 25 230 253 229 253 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF540-202 - 660 5.6e-121 390.1 145.5 4 18 1.5e-10 1.4e-07 31.6 2.0 2 24 258 280 257 282 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF540-202 - 660 5.6e-121 390.1 145.5 5 18 1.3e-09 1.3e-06 28.6 1.4 2 24 286 308 285 308 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF540-202 - 660 5.6e-121 390.1 145.5 6 18 2.3e-10 2.2e-07 31.0 3.0 2 25 314 337 313 337 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF540-202 - 660 5.6e-121 390.1 145.5 7 18 2.5e-11 2.4e-08 34.1 1.3 2 24 342 364 341 365 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF540-202 - 660 5.6e-121 390.1 145.5 8 18 1.8e-09 1.7e-06 28.2 2.3 2 25 370 393 369 393 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF540-202 - 660 5.6e-121 390.1 145.5 9 18 2.8e-09 2.6e-06 27.6 0.6 2 25 398 421 397 422 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF540-202 - 660 5.6e-121 390.1 145.5 10 18 1.4e-11 1.3e-08 34.8 0.4 1 24 425 448 425 448 0.97 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF540-202 - 660 5.6e-121 390.1 145.5 11 18 2.6e-10 2.5e-07 30.8 1.3 2 24 454 476 454 477 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF540-202 - 660 5.6e-121 390.1 145.5 12 18 4.6e-06 0.0044 17.4 1.5 5 24 485 504 482 505 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF540-202 - 660 5.6e-121 390.1 145.5 13 18 1.6e-11 1.5e-08 34.6 1.0 2 24 510 532 509 534 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF540-202 - 660 5.6e-121 390.1 145.5 14 18 7.3e-09 6.9e-06 26.3 0.8 1 25 537 561 537 562 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF540-202 - 660 5.6e-121 390.1 145.5 15 18 5.7e-10 5.4e-07 29.8 1.9 3 25 567 589 565 590 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF540-202 - 660 5.6e-121 390.1 145.5 16 18 1.6e-11 1.5e-08 34.6 0.3 1 24 593 616 593 617 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF540-202 - 660 5.6e-121 390.1 145.5 17 18 1.1e-11 1e-08 35.2 2.0 1 25 621 645 621 646 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF540-202 - 660 5.6e-121 390.1 145.5 18 18 3.6 3.4e+03 -1.2 1.1 1 10 649 658 649 659 0.85 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZNF540-202 - 660 3.8e-77 250.7 134.5 1 17 2e-05 0.019 15.4 1.4 1 23 187 209 187 209 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF540-202 - 660 3.8e-77 250.7 134.5 2 17 1.2e-06 0.0011 19.3 6.0 2 23 216 237 215 237 0.95 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF540-202 - 660 3.8e-77 250.7 134.5 3 17 6.5e-07 0.00061 20.1 0.6 1 23 243 265 243 265 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF540-202 - 660 3.8e-77 250.7 134.5 4 17 3.8e-05 0.036 14.5 1.9 1 23 271 293 271 293 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF540-202 - 660 3.8e-77 250.7 134.5 5 17 0.00022 0.21 12.1 0.5 1 23 299 321 299 321 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF540-202 - 660 3.8e-77 250.7 134.5 6 17 7.4e-08 7e-05 23.1 1.1 1 23 327 349 327 349 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF540-202 - 660 3.8e-77 250.7 134.5 7 17 5.3e-07 0.0005 20.4 2.3 1 23 355 377 355 377 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF540-202 - 660 3.8e-77 250.7 134.5 8 17 2.4e-07 0.00023 21.5 0.6 1 23 383 405 383 405 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF540-202 - 660 3.8e-77 250.7 134.5 9 17 1.6e-06 0.0015 18.8 0.2 1 23 411 433 411 433 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF540-202 - 660 3.8e-77 250.7 134.5 10 17 7e-06 0.0066 16.8 0.3 1 23 439 461 439 461 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF540-202 - 660 3.8e-77 250.7 134.5 11 17 7.7e-06 0.0073 16.7 0.9 1 23 467 489 467 489 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF540-202 - 660 3.8e-77 250.7 134.5 12 17 1.1e-05 0.01 16.2 1.9 1 23 495 517 495 517 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF540-202 - 660 3.8e-77 250.7 134.5 13 17 7.6e-09 7.2e-06 26.2 0.4 1 23 523 545 523 545 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF540-202 - 660 3.8e-77 250.7 134.5 14 17 4e-08 3.8e-05 23.9 1.1 1 23 551 573 551 573 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF540-202 - 660 3.8e-77 250.7 134.5 15 17 2.6e-09 2.4e-06 27.7 0.5 1 23 579 601 579 601 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF540-202 - 660 3.8e-77 250.7 134.5 16 17 6.4e-08 6.1e-05 23.3 1.6 1 23 607 629 607 629 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF540-202 - 660 3.8e-77 250.7 134.5 17 17 1.5e-06 0.0014 18.9 4.8 1 23 635 657 635 657 0.99 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZNF540-202 - 660 1e-43 144.2 127.7 1 17 0.0013 1.2 10.1 0.9 3 23 189 209 187 210 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF540-202 - 660 1e-43 144.2 127.7 2 17 0.0053 5 8.2 5.6 2 23 216 237 215 238 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF540-202 - 660 1e-43 144.2 127.7 3 17 7.7e-06 0.0073 17.1 0.5 1 23 243 265 243 266 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF540-202 - 660 1e-43 144.2 127.7 4 17 0.0003 0.28 12.1 1.3 1 23 271 293 271 294 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF540-202 - 660 1e-43 144.2 127.7 5 17 0.0016 1.5 9.8 0.7 1 23 299 321 299 322 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF540-202 - 660 1e-43 144.2 127.7 6 17 8.1e-06 0.0076 17.0 1.3 1 23 327 349 327 350 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF540-202 - 660 1e-43 144.2 127.7 7 17 8e-05 0.075 13.9 1.1 1 23 355 377 355 378 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF540-202 - 660 1e-43 144.2 127.7 8 17 1.6e-05 0.015 16.1 0.4 1 23 383 405 383 406 0.91 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF540-202 - 660 1e-43 144.2 127.7 9 17 2.5e-05 0.024 15.5 0.3 1 23 411 433 411 434 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF540-202 - 660 1e-43 144.2 127.7 10 17 0.0021 2 9.5 0.4 1 23 439 461 439 462 0.88 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF540-202 - 660 1e-43 144.2 127.7 11 17 0.00025 0.23 12.4 0.8 1 23 467 489 467 490 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF540-202 - 660 1e-43 144.2 127.7 12 17 0.0063 5.9 8.0 1.3 1 23 495 517 495 518 0.88 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF540-202 - 660 1e-43 144.2 127.7 13 17 9.8e-06 0.0092 16.7 0.3 1 23 523 545 523 546 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF540-202 - 660 1e-43 144.2 127.7 14 17 7.3e-05 0.069 14.0 0.7 3 23 553 573 551 574 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF540-202 - 660 1e-43 144.2 127.7 15 17 5.9e-06 0.0056 17.4 0.4 1 23 579 601 579 602 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF540-202 - 660 1e-43 144.2 127.7 16 17 0.00015 0.14 13.1 1.3 1 23 607 629 607 630 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF540-202 - 660 1e-43 144.2 127.7 17 17 2.7e-05 0.025 15.4 3.6 1 23 635 657 635 658 0.97 C2H2-type zinc finger KRAB PF01352.27 42 ZNF540-202 - 660 5.4e-26 90.0 0.3 1 1 1.1e-28 1.1e-25 89.0 0.3 1 42 5 46 5 46 0.99 KRAB box zf-C2H2_6 PF13912.6 27 ZNF540-202 - 660 2.7e-23 81.4 132.5 1 17 0.013 12 6.0 1.2 2 22 187 207 186 211 0.82 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF540-202 - 660 2.7e-23 81.4 132.5 2 17 0.075 71 3.6 1.6 3 15 216 228 216 238 0.77 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF540-202 - 660 2.7e-23 81.4 132.5 3 17 3.4e-05 0.032 14.2 0.6 2 24 243 265 243 267 0.87 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF540-202 - 660 2.7e-23 81.4 132.5 4 17 0.021 20 5.3 1.5 2 24 271 293 271 296 0.89 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF540-202 - 660 2.7e-23 81.4 132.5 5 17 8.2e-05 0.077 13.0 0.7 2 12 299 309 298 310 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF540-202 - 660 2.7e-23 81.4 132.5 6 17 0.0012 1.1 9.3 1.3 2 12 327 337 327 347 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF540-202 - 660 2.7e-23 81.4 132.5 7 17 0.00023 0.22 11.6 4.4 2 24 355 377 355 380 0.90 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF540-202 - 660 2.7e-23 81.4 132.5 8 17 7.6e-05 0.072 13.1 0.5 2 12 383 393 383 405 0.84 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF540-202 - 660 2.7e-23 81.4 132.5 9 17 0.00066 0.62 10.1 0.3 2 24 411 433 411 436 0.88 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF540-202 - 660 2.7e-23 81.4 132.5 10 17 0.00099 0.93 9.6 0.2 2 11 439 448 439 461 0.87 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF540-202 - 660 2.7e-23 81.4 132.5 11 17 0.00032 0.3 11.1 1.3 2 12 467 477 467 477 0.95 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF540-202 - 660 2.7e-23 81.4 132.5 12 17 0.15 1.5e+02 2.6 1.0 2 12 495 505 495 518 0.79 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF540-202 - 660 2.7e-23 81.4 132.5 13 17 0.00037 0.35 10.9 0.8 2 24 523 545 523 547 0.88 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF540-202 - 660 2.7e-23 81.4 132.5 14 17 0.0013 1.2 9.2 1.0 2 12 551 561 551 562 0.89 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF540-202 - 660 2.7e-23 81.4 132.5 15 17 2.3e-05 0.022 14.8 0.3 2 24 579 601 579 604 0.89 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF540-202 - 660 2.7e-23 81.4 132.5 16 17 0.002 1.9 8.6 2.6 2 24 607 625 607 628 0.77 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF540-202 - 660 2.7e-23 81.4 132.5 17 17 0.0022 2.1 8.4 5.4 2 24 635 657 635 658 0.96 C2H2-type zinc finger Zn-ribbon_8 PF09723.10 40 ZNF540-202 - 660 3.2e-22 78.3 89.9 1 14 0.014 14 5.9 0.1 21 36 179 196 169 200 0.58 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF540-202 - 660 3.2e-22 78.3 89.9 2 14 0.00095 0.89 9.7 4.5 8 34 189 222 184 226 0.91 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF540-202 - 660 3.2e-22 78.3 89.9 3 14 0.093 88 3.3 1.6 7 16 216 225 215 232 0.87 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF540-202 - 660 3.2e-22 78.3 89.9 4 14 4.2e-06 0.004 17.2 1.7 6 34 243 278 242 284 0.92 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF540-202 - 660 3.2e-22 78.3 89.9 5 14 0.00012 0.12 12.6 6.7 6 34 299 334 298 337 0.81 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF540-202 - 660 3.2e-22 78.3 89.9 6 14 9.9e-05 0.093 12.9 6.6 6 36 327 364 325 368 0.92 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF540-202 - 660 3.2e-22 78.3 89.9 7 14 0.0045 4.2 7.6 0.6 6 16 355 365 352 377 0.89 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF540-202 - 660 3.2e-22 78.3 89.9 8 14 0.0039 3.7 7.8 3.8 6 33 383 417 382 420 0.65 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF540-202 - 660 3.2e-22 78.3 89.9 9 14 0.0031 2.9 8.1 2.6 6 34 411 446 408 453 0.83 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF540-202 - 660 3.2e-22 78.3 89.9 10 14 0.00026 0.25 11.5 0.1 6 22 467 483 466 490 0.86 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF540-202 - 660 3.2e-22 78.3 89.9 11 14 5.3e-06 0.005 16.9 2.1 6 36 495 532 494 535 0.90 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF540-202 - 660 3.2e-22 78.3 89.9 12 14 1.7e-05 0.016 15.3 4.3 6 38 551 590 550 592 0.90 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF540-202 - 660 3.2e-22 78.3 89.9 13 14 5.5e-06 0.0052 16.9 3.6 6 35 579 615 578 617 0.91 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF540-202 - 660 3.2e-22 78.3 89.9 14 14 6e-05 0.056 13.6 2.8 6 37 607 645 606 647 0.91 Zinc ribbon domain zf_UBZ PF18439.1 32 ZNF540-202 - 660 3.5e-14 52.1 75.8 1 17 0.17 1.6e+02 2.0 0.1 4 13 188 197 186 206 0.78 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF540-202 - 660 3.5e-14 52.1 75.8 2 17 0.0021 2 8.1 1.3 4 24 216 237 213 238 0.86 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF540-202 - 660 3.5e-14 52.1 75.8 3 17 0.0039 3.6 7.2 0.2 3 20 243 261 241 262 0.79 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF540-202 - 660 3.5e-14 52.1 75.8 4 17 0.098 92 2.8 0.1 3 20 271 289 269 290 0.81 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF540-202 - 660 3.5e-14 52.1 75.8 5 17 0.0029 2.8 7.6 0.3 2 20 298 317 297 318 0.80 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF540-202 - 660 3.5e-14 52.1 75.8 6 17 0.0093 8.7 6.0 0.6 3 20 327 345 325 346 0.79 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF540-202 - 660 3.5e-14 52.1 75.8 7 17 0.0023 2.2 8.0 0.1 3 20 355 373 353 374 0.89 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF540-202 - 660 3.5e-14 52.1 75.8 8 17 0.0034 3.2 7.4 0.1 3 20 383 401 381 402 0.82 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF540-202 - 660 3.5e-14 52.1 75.8 9 17 2.8 2.6e+03 -1.9 0.0 3 15 411 423 410 430 0.75 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF540-202 - 660 3.5e-14 52.1 75.8 10 17 0.011 10 5.8 0.1 3 21 439 458 437 458 0.79 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF540-202 - 660 3.5e-14 52.1 75.8 11 17 0.013 12 5.6 0.1 3 13 467 477 465 485 0.84 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF540-202 - 660 3.5e-14 52.1 75.8 12 17 0.018 17 5.1 0.0 3 20 495 513 493 514 0.81 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF540-202 - 660 3.5e-14 52.1 75.8 13 17 0.0045 4.2 7.0 0.1 3 20 523 541 521 542 0.86 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF540-202 - 660 3.5e-14 52.1 75.8 14 17 7e-05 0.066 12.8 0.2 3 21 551 570 549 570 0.95 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF540-202 - 660 3.5e-14 52.1 75.8 15 17 0.0039 3.7 7.2 0.1 3 18 579 595 577 598 0.80 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF540-202 - 660 3.5e-14 52.1 75.8 16 17 0.0024 2.2 7.9 0.4 3 21 607 626 605 626 0.92 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF540-202 - 660 3.5e-14 52.1 75.8 17 17 6.3 6e+03 -3.0 0.3 3 12 635 644 634 647 0.84 Ubiquitin-Binding Zinc Finger XPA_N PF01286.18 32 ZNF540-202 - 660 2.3e-13 49.9 80.4 1 17 0.0082 7.7 6.7 0.1 3 13 188 198 186 203 0.83 XPA protein N-terminal XPA_N PF01286.18 32 ZNF540-202 - 660 2.3e-13 49.9 80.4 2 17 0.0033 3.1 7.9 1.0 3 15 216 228 215 234 0.91 XPA protein N-terminal XPA_N PF01286.18 32 ZNF540-202 - 660 2.3e-13 49.9 80.4 3 17 0.0074 7 6.8 0.2 3 12 244 253 242 254 0.89 XPA protein N-terminal XPA_N PF01286.18 32 ZNF540-202 - 660 2.3e-13 49.9 80.4 4 17 0.31 2.9e+02 1.6 0.3 3 11 272 280 270 282 0.88 XPA protein N-terminal XPA_N PF01286.18 32 ZNF540-202 - 660 2.3e-13 49.9 80.4 5 17 0.014 14 5.9 0.6 3 18 300 315 299 318 0.86 XPA protein N-terminal XPA_N PF01286.18 32 ZNF540-202 - 660 2.3e-13 49.9 80.4 6 17 0.013 12 6.0 0.2 3 12 328 337 326 338 0.88 XPA protein N-terminal XPA_N PF01286.18 32 ZNF540-202 - 660 2.3e-13 49.9 80.4 7 17 3.7e-05 0.035 14.2 0.2 3 18 356 371 354 374 0.91 XPA protein N-terminal XPA_N PF01286.18 32 ZNF540-202 - 660 2.3e-13 49.9 80.4 8 17 0.019 17 5.5 0.3 3 11 384 392 382 394 0.88 XPA protein N-terminal XPA_N PF01286.18 32 ZNF540-202 - 660 2.3e-13 49.9 80.4 9 17 0.23 2.1e+02 2.0 0.2 20 27 411 418 408 423 0.71 XPA protein N-terminal XPA_N PF01286.18 32 ZNF540-202 - 660 2.3e-13 49.9 80.4 10 17 0.0039 3.7 7.7 0.1 3 12 440 449 438 457 0.85 XPA protein N-terminal XPA_N PF01286.18 32 ZNF540-202 - 660 2.3e-13 49.9 80.4 11 17 0.013 12 6.0 0.2 3 11 468 476 466 478 0.89 XPA protein N-terminal XPA_N PF01286.18 32 ZNF540-202 - 660 2.3e-13 49.9 80.4 12 17 0.051 48 4.1 0.1 3 18 496 511 494 513 0.84 XPA protein N-terminal XPA_N PF01286.18 32 ZNF540-202 - 660 2.3e-13 49.9 80.4 13 17 0.012 11 6.1 0.2 3 11 524 532 522 534 0.89 XPA protein N-terminal XPA_N PF01286.18 32 ZNF540-202 - 660 2.3e-13 49.9 80.4 14 17 0.022 21 5.3 0.3 3 12 552 561 550 562 0.88 XPA protein N-terminal XPA_N PF01286.18 32 ZNF540-202 - 660 2.3e-13 49.9 80.4 15 17 0.0023 2.2 8.4 0.1 3 14 580 591 578 592 0.90 XPA protein N-terminal XPA_N PF01286.18 32 ZNF540-202 - 660 2.3e-13 49.9 80.4 16 17 0.041 39 4.4 0.1 3 12 608 617 606 625 0.78 XPA protein N-terminal XPA_N PF01286.18 32 ZNF540-202 - 660 2.3e-13 49.9 80.4 17 17 0.4 3.8e+02 1.2 0.1 20 27 635 642 633 652 0.75 XPA protein N-terminal zf-C2H2_jaz PF12171.8 27 ZNF540-202 - 660 2.8e-13 49.8 85.7 1 17 0.0023 2.1 8.7 1.3 2 22 187 207 186 207 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF540-202 - 660 2.8e-13 49.8 85.7 2 17 0.058 55 4.2 0.7 4 22 217 235 216 235 0.91 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF540-202 - 660 2.8e-13 49.8 85.7 3 17 0.029 28 5.2 0.1 2 11 243 252 242 253 0.91 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF540-202 - 660 2.8e-13 49.8 85.7 4 17 0.0018 1.7 9.0 0.2 2 22 271 291 270 291 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF540-202 - 660 2.8e-13 49.8 85.7 5 17 0.053 50 4.3 1.4 2 21 299 318 298 319 0.77 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF540-202 - 660 2.8e-13 49.8 85.7 6 17 0.11 1e+02 3.4 0.5 2 12 327 337 326 347 0.84 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF540-202 - 660 2.8e-13 49.8 85.7 7 17 0.0093 8.7 6.8 0.2 2 23 355 376 354 378 0.76 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF540-202 - 660 2.8e-13 49.8 85.7 8 17 0.0061 5.8 7.3 0.1 2 21 383 402 382 403 0.84 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF540-202 - 660 2.8e-13 49.8 85.7 9 17 0.022 21 5.6 0.1 2 15 411 424 410 429 0.75 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF540-202 - 660 2.8e-13 49.8 85.7 10 17 0.14 1.4e+02 3.0 0.1 2 11 439 448 438 459 0.80 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF540-202 - 660 2.8e-13 49.8 85.7 11 17 0.016 15 6.0 0.1 2 12 467 477 466 487 0.81 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF540-202 - 660 2.8e-13 49.8 85.7 12 17 1.1 1.1e+03 0.1 0.3 2 11 495 504 494 505 0.89 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF540-202 - 660 2.8e-13 49.8 85.7 13 17 0.00014 0.14 12.5 0.0 2 22 523 543 522 543 0.95 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF540-202 - 660 2.8e-13 49.8 85.7 14 17 0.00019 0.18 12.1 0.1 2 22 551 571 550 571 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF540-202 - 660 2.8e-13 49.8 85.7 15 17 0.0033 3.1 8.2 0.0 2 22 579 599 578 599 0.91 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF540-202 - 660 2.8e-13 49.8 85.7 16 17 0.17 1.6e+02 2.7 0.2 2 21 607 626 606 627 0.80 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF540-202 - 660 2.8e-13 49.8 85.7 17 17 0.098 93 3.5 2.1 2 12 635 645 634 658 0.73 Zinc-finger double-stranded RNA-binding # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF540-202.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF540-202.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF540-202.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF540-202.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF540-202.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:08:24 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF540-203.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF540-203.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF540-203.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF540-203.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF540-203.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:08:24 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF540-204.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF540-204.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF540-204.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF540-204.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF540-204.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:08:24 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF540-205.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF540-205.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF540-205.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF540-205.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF540-205.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:08:25 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZNF540-206 - 628 2.1e-121 391.5 145.5 1 18 0.035 33 5.1 0.5 13 26 146 166 130 166 0.63 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF540-206 - 628 2.1e-121 391.5 145.5 2 18 6.9e-07 0.00065 20.0 3.8 2 26 170 194 169 194 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF540-206 - 628 2.1e-121 391.5 145.5 3 18 2.7e-11 2.6e-08 33.9 1.0 2 25 198 221 197 221 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF540-206 - 628 2.1e-121 391.5 145.5 4 18 1.4e-10 1.3e-07 31.7 2.0 2 24 226 248 225 250 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF540-206 - 628 2.1e-121 391.5 145.5 5 18 1.3e-09 1.2e-06 28.7 1.4 2 24 254 276 253 276 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF540-206 - 628 2.1e-121 391.5 145.5 6 18 2.2e-10 2e-07 31.1 3.0 2 25 282 305 281 305 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF540-206 - 628 2.1e-121 391.5 145.5 7 18 2.4e-11 2.2e-08 34.1 1.3 2 24 310 332 309 333 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF540-206 - 628 2.1e-121 391.5 145.5 8 18 1.7e-09 1.6e-06 28.3 2.3 2 25 338 361 337 361 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF540-206 - 628 2.1e-121 391.5 145.5 9 18 2.6e-09 2.5e-06 27.7 0.6 2 25 366 389 365 390 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF540-206 - 628 2.1e-121 391.5 145.5 10 18 1.3e-11 1.3e-08 34.9 0.4 1 24 393 416 393 416 0.97 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF540-206 - 628 2.1e-121 391.5 145.5 11 18 2.5e-10 2.3e-07 30.9 1.3 2 24 422 444 422 445 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF540-206 - 628 2.1e-121 391.5 145.5 12 18 4.4e-06 0.0041 17.5 1.5 5 24 453 472 450 473 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF540-206 - 628 2.1e-121 391.5 145.5 13 18 1.5e-11 1.5e-08 34.7 1.0 2 24 478 500 477 502 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF540-206 - 628 2.1e-121 391.5 145.5 14 18 6.9e-09 6.5e-06 26.3 0.8 1 25 505 529 505 530 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF540-206 - 628 2.1e-121 391.5 145.5 15 18 5.4e-10 5.1e-07 29.8 1.9 3 25 535 557 533 558 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF540-206 - 628 2.1e-121 391.5 145.5 16 18 1.5e-11 1.5e-08 34.7 0.3 1 24 561 584 561 585 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF540-206 - 628 2.1e-121 391.5 145.5 17 18 1e-11 9.4e-09 35.3 2.0 1 25 589 613 589 614 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF540-206 - 628 2.1e-121 391.5 145.5 18 18 3.4 3.2e+03 -1.2 1.1 1 10 617 626 617 627 0.85 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZNF540-206 - 628 1.4e-77 252.0 134.5 1 17 1.9e-05 0.018 15.5 1.4 1 23 155 177 155 177 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF540-206 - 628 1.4e-77 252.0 134.5 2 17 1.1e-06 0.001 19.4 6.0 2 23 184 205 183 205 0.95 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF540-206 - 628 1.4e-77 252.0 134.5 3 17 6.1e-07 0.00058 20.2 0.6 1 23 211 233 211 233 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF540-206 - 628 1.4e-77 252.0 134.5 4 17 3.6e-05 0.034 14.6 1.9 1 23 239 261 239 261 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF540-206 - 628 1.4e-77 252.0 134.5 5 17 0.00021 0.19 12.2 0.5 1 23 267 289 267 289 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF540-206 - 628 1.4e-77 252.0 134.5 6 17 7e-08 6.6e-05 23.1 1.1 1 23 295 317 295 317 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF540-206 - 628 1.4e-77 252.0 134.5 7 17 5e-07 0.00047 20.5 2.3 1 23 323 345 323 345 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF540-206 - 628 1.4e-77 252.0 134.5 8 17 2.3e-07 0.00021 21.5 0.6 1 23 351 373 351 373 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF540-206 - 628 1.4e-77 252.0 134.5 9 17 1.5e-06 0.0015 18.9 0.2 1 23 379 401 379 401 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF540-206 - 628 1.4e-77 252.0 134.5 10 17 6.6e-06 0.0063 16.9 0.3 1 23 407 429 407 429 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF540-206 - 628 1.4e-77 252.0 134.5 11 17 7.3e-06 0.0069 16.8 0.9 1 23 435 457 435 457 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF540-206 - 628 1.4e-77 252.0 134.5 12 17 1e-05 0.0098 16.3 1.9 1 23 463 485 463 485 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF540-206 - 628 1.4e-77 252.0 134.5 13 17 7.2e-09 6.8e-06 26.3 0.4 1 23 491 513 491 513 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF540-206 - 628 1.4e-77 252.0 134.5 14 17 3.8e-08 3.6e-05 24.0 1.1 1 23 519 541 519 541 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF540-206 - 628 1.4e-77 252.0 134.5 15 17 2.4e-09 2.3e-06 27.7 0.5 1 23 547 569 547 569 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF540-206 - 628 1.4e-77 252.0 134.5 16 17 6.1e-08 5.7e-05 23.3 1.6 1 23 575 597 575 597 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF540-206 - 628 1.4e-77 252.0 134.5 17 17 1.4e-06 0.0014 19.0 4.8 1 23 603 625 603 625 0.99 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZNF540-206 - 628 3.8e-44 145.5 127.7 1 17 0.0012 1.2 10.2 0.9 3 23 157 177 155 178 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF540-206 - 628 3.8e-44 145.5 127.7 2 17 0.005 4.8 8.3 5.6 2 23 184 205 183 206 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF540-206 - 628 3.8e-44 145.5 127.7 3 17 7.3e-06 0.0068 17.1 0.5 1 23 211 233 211 234 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF540-206 - 628 3.8e-44 145.5 127.7 4 17 0.00028 0.26 12.2 1.3 1 23 239 261 239 262 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF540-206 - 628 3.8e-44 145.5 127.7 5 17 0.0015 1.5 9.9 0.7 1 23 267 289 267 290 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF540-206 - 628 3.8e-44 145.5 127.7 6 17 7.6e-06 0.0072 17.1 1.3 1 23 295 317 295 318 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF540-206 - 628 3.8e-44 145.5 127.7 7 17 7.5e-05 0.071 14.0 1.1 1 23 323 345 323 346 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF540-206 - 628 3.8e-44 145.5 127.7 8 17 1.5e-05 0.014 16.2 0.4 1 23 351 373 351 374 0.91 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF540-206 - 628 3.8e-44 145.5 127.7 9 17 2.4e-05 0.022 15.5 0.3 1 23 379 401 379 402 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF540-206 - 628 3.8e-44 145.5 127.7 10 17 0.002 1.9 9.5 0.4 1 23 407 429 407 430 0.88 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF540-206 - 628 3.8e-44 145.5 127.7 11 17 0.00023 0.22 12.5 0.8 1 23 435 457 435 458 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF540-206 - 628 3.8e-44 145.5 127.7 12 17 0.0059 5.6 8.1 1.3 1 23 463 485 463 486 0.88 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF540-206 - 628 3.8e-44 145.5 127.7 13 17 9.2e-06 0.0087 16.8 0.3 1 23 491 513 491 514 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF540-206 - 628 3.8e-44 145.5 127.7 14 17 6.9e-05 0.065 14.1 0.7 3 23 521 541 519 542 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF540-206 - 628 3.8e-44 145.5 127.7 15 17 5.6e-06 0.0053 17.5 0.4 1 23 547 569 547 570 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF540-206 - 628 3.8e-44 145.5 127.7 16 17 0.00014 0.13 13.1 1.3 1 23 575 597 575 598 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF540-206 - 628 3.8e-44 145.5 127.7 17 17 2.5e-05 0.024 15.5 3.6 1 23 603 625 603 626 0.97 C2H2-type zinc finger KRAB PF01352.27 42 ZNF540-206 - 628 5.1e-26 90.0 0.3 1 1 1.1e-28 1e-25 89.1 0.3 1 42 5 46 5 46 0.99 KRAB box zf-C2H2_6 PF13912.6 27 ZNF540-206 - 628 1.1e-23 82.6 132.6 1 17 0.012 12 6.1 1.2 2 22 155 175 154 179 0.82 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF540-206 - 628 1.1e-23 82.6 132.6 2 17 0.071 67 3.6 1.6 3 15 184 196 184 206 0.77 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF540-206 - 628 1.1e-23 82.6 132.6 3 17 3.2e-05 0.03 14.3 0.6 2 24 211 233 211 235 0.87 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF540-206 - 628 1.1e-23 82.6 132.6 4 17 0.02 19 5.4 1.5 2 24 239 261 239 264 0.89 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF540-206 - 628 1.1e-23 82.6 132.6 5 17 7.7e-05 0.073 13.1 0.7 2 12 267 277 266 278 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF540-206 - 628 1.1e-23 82.6 132.6 6 17 0.0011 1 9.4 1.3 2 12 295 305 295 315 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF540-206 - 628 1.1e-23 82.6 132.6 7 17 0.00022 0.2 11.7 4.4 2 24 323 345 323 348 0.90 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF540-206 - 628 1.1e-23 82.6 132.6 8 17 7.2e-05 0.068 13.2 0.5 2 12 351 361 351 373 0.84 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF540-206 - 628 1.1e-23 82.6 132.6 9 17 0.00062 0.59 10.2 0.3 2 24 379 401 379 404 0.88 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF540-206 - 628 1.1e-23 82.6 132.6 10 17 0.00093 0.88 9.6 0.2 2 11 407 416 407 429 0.87 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF540-206 - 628 1.1e-23 82.6 132.6 11 17 0.00031 0.29 11.2 1.3 2 12 435 445 435 445 0.95 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF540-206 - 628 1.1e-23 82.6 132.6 12 17 0.15 1.4e+02 2.7 1.0 2 12 463 473 463 486 0.79 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF540-206 - 628 1.1e-23 82.6 132.6 13 17 0.00035 0.33 11.0 0.8 2 24 491 513 491 515 0.88 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF540-206 - 628 1.1e-23 82.6 132.6 14 17 0.0012 1.2 9.3 1.0 2 12 519 529 519 530 0.89 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF540-206 - 628 1.1e-23 82.6 132.6 15 17 2.2e-05 0.02 14.9 0.3 2 24 547 569 547 572 0.89 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF540-206 - 628 1.1e-23 82.6 132.6 16 17 0.0021 1.9 8.6 2.7 2 24 575 593 575 596 0.77 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF540-206 - 628 1.1e-23 82.6 132.6 17 17 0.0021 2 8.5 5.4 2 24 603 625 603 626 0.96 C2H2-type zinc finger Zn-ribbon_8 PF09723.10 40 ZNF540-206 - 628 1.9e-22 79.1 90.0 1 14 0.014 13 6.0 0.1 21 36 147 164 137 168 0.58 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF540-206 - 628 1.9e-22 79.1 90.0 2 14 0.00097 0.91 9.7 4.6 8 34 157 190 152 194 0.91 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF540-206 - 628 1.9e-22 79.1 90.0 3 14 0.086 81 3.5 1.6 7 16 184 193 182 200 0.87 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF540-206 - 628 1.9e-22 79.1 90.0 4 14 4e-06 0.0037 17.3 1.7 6 34 211 246 210 252 0.92 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF540-206 - 628 1.9e-22 79.1 90.0 5 14 0.00012 0.11 12.6 6.8 6 34 267 302 266 305 0.81 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF540-206 - 628 1.9e-22 79.1 90.0 6 14 9.3e-05 0.088 12.9 6.6 6 36 295 332 294 336 0.92 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF540-206 - 628 1.9e-22 79.1 90.0 7 14 0.0047 4.4 7.5 0.7 6 16 323 333 322 345 0.88 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF540-206 - 628 1.9e-22 79.1 90.0 8 14 0.0039 3.6 7.8 3.7 6 32 351 384 350 387 0.64 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF540-206 - 628 1.9e-22 79.1 90.0 9 14 0.0028 2.6 8.2 2.6 6 34 379 414 376 422 0.83 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF540-206 - 628 1.9e-22 79.1 90.0 10 14 0.00025 0.23 11.6 0.1 6 22 435 451 434 458 0.86 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF540-206 - 628 1.9e-22 79.1 90.0 11 14 5e-06 0.0047 17.0 2.1 6 36 463 500 462 503 0.90 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF540-206 - 628 1.9e-22 79.1 90.0 12 14 1.6e-05 0.015 15.4 4.3 6 38 519 558 518 560 0.90 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF540-206 - 628 1.9e-22 79.1 90.0 13 14 2.5e-06 0.0024 18.0 2.8 6 36 547 584 546 586 0.91 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF540-206 - 628 1.9e-22 79.1 90.0 14 14 5.6e-05 0.053 13.6 2.8 6 37 575 613 574 615 0.91 Zinc ribbon domain zf_UBZ PF18439.1 32 ZNF540-206 - 628 1.2e-14 53.6 75.4 1 17 0.16 1.6e+02 2.0 0.1 4 13 156 165 154 174 0.78 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF540-206 - 628 1.2e-14 53.6 75.4 2 17 0.002 1.9 8.1 1.3 4 24 184 205 181 206 0.86 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF540-206 - 628 1.2e-14 53.6 75.4 3 17 0.0037 3.4 7.3 0.2 3 20 211 229 209 230 0.79 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF540-206 - 628 1.2e-14 53.6 75.4 4 17 0.092 87 2.8 0.1 3 20 239 257 237 258 0.81 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF540-206 - 628 1.2e-14 53.6 75.4 5 17 0.0028 2.6 7.7 0.3 2 20 266 285 265 286 0.80 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF540-206 - 628 1.2e-14 53.6 75.4 6 17 0.0087 8.3 6.1 0.6 3 20 295 313 293 314 0.79 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF540-206 - 628 1.2e-14 53.6 75.4 7 17 0.0022 2.1 8.0 0.1 3 20 323 341 321 342 0.89 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF540-206 - 628 1.2e-14 53.6 75.4 8 17 0.0033 3.1 7.5 0.1 3 20 351 369 349 370 0.82 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF540-206 - 628 1.2e-14 53.6 75.4 9 17 2.6 2.5e+03 -1.8 0.0 3 15 379 391 378 398 0.75 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF540-206 - 628 1.2e-14 53.6 75.4 10 17 0.01 9.9 5.9 0.1 3 21 407 426 405 426 0.79 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF540-206 - 628 1.2e-14 53.6 75.4 11 17 0.012 11 5.7 0.1 3 13 435 445 433 453 0.84 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF540-206 - 628 1.2e-14 53.6 75.4 12 17 0.017 16 5.2 0.0 3 20 463 481 461 482 0.81 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF540-206 - 628 1.2e-14 53.6 75.4 13 17 0.0042 4 7.1 0.1 3 20 491 509 489 510 0.86 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF540-206 - 628 1.2e-14 53.6 75.4 14 17 6.6e-05 0.062 12.9 0.2 3 21 519 538 517 538 0.95 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF540-206 - 628 1.2e-14 53.6 75.4 15 17 0.0037 3.5 7.3 0.1 3 18 547 563 545 566 0.80 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF540-206 - 628 1.2e-14 53.6 75.4 16 17 0.0022 2.1 8.0 0.4 3 21 575 594 573 594 0.92 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF540-206 - 628 1.2e-14 53.6 75.4 17 17 5.5 5.2e+03 -2.8 0.3 3 12 603 612 602 616 0.84 Ubiquitin-Binding Zinc Finger XPA_N PF01286.18 32 ZNF540-206 - 628 9.6e-14 51.1 80.4 1 17 0.0077 7.3 6.7 0.1 3 13 156 166 154 171 0.83 XPA protein N-terminal XPA_N PF01286.18 32 ZNF540-206 - 628 9.6e-14 51.1 80.4 2 17 0.0031 3 8.0 1.0 3 15 184 196 183 202 0.91 XPA protein N-terminal XPA_N PF01286.18 32 ZNF540-206 - 628 9.6e-14 51.1 80.4 3 17 0.007 6.6 6.9 0.2 3 12 212 221 210 222 0.89 XPA protein N-terminal XPA_N PF01286.18 32 ZNF540-206 - 628 9.6e-14 51.1 80.4 4 17 0.29 2.7e+02 1.7 0.3 3 11 240 248 238 250 0.88 XPA protein N-terminal XPA_N PF01286.18 32 ZNF540-206 - 628 9.6e-14 51.1 80.4 5 17 0.014 13 5.9 0.6 3 18 268 283 267 286 0.86 XPA protein N-terminal XPA_N PF01286.18 32 ZNF540-206 - 628 9.6e-14 51.1 80.4 6 17 0.012 11 6.1 0.2 3 12 296 305 294 306 0.88 XPA protein N-terminal XPA_N PF01286.18 32 ZNF540-206 - 628 9.6e-14 51.1 80.4 7 17 3.5e-05 0.033 14.2 0.2 3 18 324 339 322 342 0.91 XPA protein N-terminal XPA_N PF01286.18 32 ZNF540-206 - 628 9.6e-14 51.1 80.4 8 17 0.018 17 5.6 0.3 3 11 352 360 350 362 0.88 XPA protein N-terminal XPA_N PF01286.18 32 ZNF540-206 - 628 9.6e-14 51.1 80.4 9 17 0.21 2e+02 2.1 0.2 20 27 379 386 376 391 0.71 XPA protein N-terminal XPA_N PF01286.18 32 ZNF540-206 - 628 9.6e-14 51.1 80.4 10 17 0.0037 3.5 7.8 0.1 3 12 408 417 406 425 0.85 XPA protein N-terminal XPA_N PF01286.18 32 ZNF540-206 - 628 9.6e-14 51.1 80.4 11 17 0.012 12 6.1 0.2 3 11 436 444 434 446 0.89 XPA protein N-terminal XPA_N PF01286.18 32 ZNF540-206 - 628 9.6e-14 51.1 80.4 12 17 0.049 46 4.2 0.1 3 18 464 479 462 481 0.84 XPA protein N-terminal XPA_N PF01286.18 32 ZNF540-206 - 628 9.6e-14 51.1 80.4 13 17 0.011 11 6.2 0.2 3 11 492 500 490 502 0.89 XPA protein N-terminal XPA_N PF01286.18 32 ZNF540-206 - 628 9.6e-14 51.1 80.4 14 17 0.021 19 5.4 0.3 3 12 520 529 518 530 0.88 XPA protein N-terminal XPA_N PF01286.18 32 ZNF540-206 - 628 9.6e-14 51.1 80.4 15 17 0.0022 2.1 8.5 0.1 3 14 548 559 546 560 0.90 XPA protein N-terminal XPA_N PF01286.18 32 ZNF540-206 - 628 9.6e-14 51.1 80.4 16 17 0.039 37 4.5 0.1 3 12 576 585 574 593 0.78 XPA protein N-terminal XPA_N PF01286.18 32 ZNF540-206 - 628 9.6e-14 51.1 80.4 17 17 0.38 3.6e+02 1.3 0.1 20 27 603 610 601 620 0.75 XPA protein N-terminal zf-C2H2_jaz PF12171.8 27 ZNF540-206 - 628 1.1e-13 51.1 85.7 1 17 0.0021 2 8.8 1.3 2 22 155 175 154 175 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF540-206 - 628 1.1e-13 51.1 85.7 2 17 0.055 52 4.3 0.7 4 22 185 203 184 203 0.91 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF540-206 - 628 1.1e-13 51.1 85.7 3 17 0.028 26 5.2 0.1 2 11 211 220 210 221 0.91 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF540-206 - 628 1.1e-13 51.1 85.7 4 17 0.0017 1.6 9.1 0.2 2 22 239 259 238 259 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF540-206 - 628 1.1e-13 51.1 85.7 5 17 0.05 48 4.4 1.4 2 21 267 286 266 287 0.77 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF540-206 - 628 1.1e-13 51.1 85.7 6 17 0.1 95 3.5 0.5 2 12 295 305 294 315 0.84 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF540-206 - 628 1.1e-13 51.1 85.7 7 17 0.0088 8.3 6.8 0.2 2 23 323 344 322 346 0.76 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF540-206 - 628 1.1e-13 51.1 85.7 8 17 0.0058 5.5 7.4 0.1 2 21 351 370 350 371 0.84 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF540-206 - 628 1.1e-13 51.1 85.7 9 17 0.021 20 5.6 0.1 2 16 379 393 378 397 0.75 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF540-206 - 628 1.1e-13 51.1 85.7 10 17 0.14 1.3e+02 3.0 0.1 2 11 407 416 406 427 0.80 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF540-206 - 628 1.1e-13 51.1 85.7 11 17 0.015 14 6.1 0.1 2 12 435 445 434 455 0.81 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF540-206 - 628 1.1e-13 51.1 85.7 12 17 1.1 1e+03 0.2 0.3 2 11 463 472 462 473 0.89 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF540-206 - 628 1.1e-13 51.1 85.7 13 17 0.00014 0.13 12.6 0.0 2 22 491 511 490 511 0.95 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF540-206 - 628 1.1e-13 51.1 85.7 14 17 0.00018 0.17 12.2 0.1 2 22 519 539 518 539 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF540-206 - 628 1.1e-13 51.1 85.7 15 17 0.0031 2.9 8.3 0.0 2 22 547 567 546 567 0.91 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF540-206 - 628 1.1e-13 51.1 85.7 16 17 0.16 1.5e+02 2.8 0.2 2 21 575 594 574 595 0.80 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF540-206 - 628 1.1e-13 51.1 85.7 17 17 0.093 88 3.6 2.1 2 12 603 613 602 626 0.73 Zinc-finger double-stranded RNA-binding C1_4 PF07975.12 55 ZNF540-206 - 628 3.5e-07 30.3 78.3 1 14 1.3 1.3e+03 -0.3 1.2 22 48 151 177 137 184 0.67 TFIIH C1-like domain C1_4 PF07975.12 55 ZNF540-206 - 628 3.5e-07 30.3 78.3 2 14 0.64 6e+02 0.8 5.7 2 48 157 205 156 209 0.80 TFIIH C1-like domain C1_4 PF07975.12 55 ZNF540-206 - 628 3.5e-07 30.3 78.3 3 14 0.024 22 5.4 3.3 2 49 185 234 184 236 0.81 TFIIH C1-like domain C1_4 PF07975.12 55 ZNF540-206 - 628 3.5e-07 30.3 78.3 4 14 0.04 37 4.6 3.0 1 35 212 248 212 262 0.72 TFIIH C1-like domain C1_4 PF07975.12 55 ZNF540-206 - 628 3.5e-07 30.3 78.3 5 14 0.045 42 4.5 4.5 2 37 241 278 240 292 0.72 TFIIH C1-like domain C1_4 PF07975.12 55 ZNF540-206 - 628 3.5e-07 30.3 78.3 6 14 0.025 23 5.3 4.5 2 49 269 318 268 321 0.76 TFIIH C1-like domain C1_4 PF07975.12 55 ZNF540-206 - 628 3.5e-07 30.3 78.3 7 14 0.13 1.2e+02 3.0 4.5 1 36 296 333 296 346 0.80 TFIIH C1-like domain C1_4 PF07975.12 55 ZNF540-206 - 628 3.5e-07 30.3 78.3 8 14 0.004 3.8 7.8 1.3 2 49 325 374 324 376 0.76 TFIIH C1-like domain C1_4 PF07975.12 55 ZNF540-206 - 628 3.5e-07 30.3 78.3 9 14 0.00034 0.32 11.3 0.9 1 49 352 402 352 405 0.80 TFIIH C1-like domain C1_4 PF07975.12 55 ZNF540-206 - 628 3.5e-07 30.3 78.3 10 14 0.0013 1.3 9.4 0.7 2 49 381 430 380 433 0.80 TFIIH C1-like domain C1_4 PF07975.12 55 ZNF540-206 - 628 3.5e-07 30.3 78.3 11 14 0.00046 0.44 10.8 0.7 2 49 409 458 408 460 0.79 TFIIH C1-like domain C1_4 PF07975.12 55 ZNF540-206 - 628 3.5e-07 30.3 78.3 12 14 0.028 27 5.1 1.1 1 35 464 500 464 515 0.81 TFIIH C1-like domain C1_4 PF07975.12 55 ZNF540-206 - 628 3.5e-07 30.3 78.3 13 14 3.7e-05 0.035 14.3 1.0 2 49 521 570 520 573 0.86 TFIIH C1-like domain C1_4 PF07975.12 55 ZNF540-206 - 628 3.5e-07 30.3 78.3 14 14 0.021 20 5.5 4.6 2 49 577 626 576 628 0.80 TFIIH C1-like domain # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF540-206.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF540-206.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF540-206.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF540-206.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF540-206.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:08:25 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZNF540-207 - 637 2.9e-121 391.0 145.5 1 18 0.032 34 5.1 0.5 13 26 155 175 139 175 0.63 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF540-207 - 637 2.9e-121 391.0 145.5 2 18 6.3e-07 0.00066 20.0 3.8 2 26 179 203 178 203 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF540-207 - 637 2.9e-121 391.0 145.5 3 18 2.5e-11 2.6e-08 33.9 1.0 2 25 207 230 206 230 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF540-207 - 637 2.9e-121 391.0 145.5 4 18 1.3e-10 1.3e-07 31.7 2.0 2 24 235 257 234 259 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF540-207 - 637 2.9e-121 391.0 145.5 5 18 1.2e-09 1.2e-06 28.6 1.4 2 24 263 285 262 285 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF540-207 - 637 2.9e-121 391.0 145.5 6 18 2e-10 2.1e-07 31.1 3.0 2 25 291 314 290 314 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF540-207 - 637 2.9e-121 391.0 145.5 7 18 2.1e-11 2.3e-08 34.1 1.3 2 24 319 341 318 342 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF540-207 - 637 2.9e-121 391.0 145.5 8 18 1.5e-09 1.6e-06 28.2 2.3 2 25 347 370 346 370 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF540-207 - 637 2.9e-121 391.0 145.5 9 18 2.4e-09 2.5e-06 27.7 0.6 2 25 375 398 374 399 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF540-207 - 637 2.9e-121 391.0 145.5 10 18 1.2e-11 1.3e-08 34.9 0.4 1 24 402 425 402 425 0.97 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF540-207 - 637 2.9e-121 391.0 145.5 11 18 2.2e-10 2.4e-07 30.9 1.3 2 24 431 453 431 454 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF540-207 - 637 2.9e-121 391.0 145.5 12 18 4e-06 0.0042 17.5 1.5 5 24 462 481 459 482 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF540-207 - 637 2.9e-121 391.0 145.5 13 18 1.4e-11 1.5e-08 34.7 1.0 2 24 487 509 486 511 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF540-207 - 637 2.9e-121 391.0 145.5 14 18 6.2e-09 6.6e-06 26.3 0.8 1 25 514 538 514 539 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF540-207 - 637 2.9e-121 391.0 145.5 15 18 4.9e-10 5.2e-07 29.8 1.9 3 25 544 566 542 567 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF540-207 - 637 2.9e-121 391.0 145.5 16 18 1.4e-11 1.5e-08 34.7 0.3 1 24 570 593 570 594 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF540-207 - 637 2.9e-121 391.0 145.5 17 18 9.1e-12 9.6e-09 35.3 2.0 1 25 598 622 598 623 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF540-207 - 637 2.9e-121 391.0 145.5 18 18 3.1 3.3e+03 -1.2 1.1 1 10 626 635 626 636 0.85 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZNF540-207 - 637 1.9e-77 251.6 134.5 1 17 1.7e-05 0.018 15.5 1.4 1 23 164 186 164 186 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF540-207 - 637 1.9e-77 251.6 134.5 2 17 1e-06 0.0011 19.4 6.0 2 23 193 214 192 214 0.95 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF540-207 - 637 1.9e-77 251.6 134.5 3 17 5.6e-07 0.00059 20.2 0.6 1 23 220 242 220 242 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF540-207 - 637 1.9e-77 251.6 134.5 4 17 3.3e-05 0.035 14.6 1.9 1 23 248 270 248 270 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF540-207 - 637 1.9e-77 251.6 134.5 5 17 0.00019 0.2 12.2 0.5 1 23 276 298 276 298 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF540-207 - 637 1.9e-77 251.6 134.5 6 17 6.4e-08 6.7e-05 23.1 1.1 1 23 304 326 304 326 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF540-207 - 637 1.9e-77 251.6 134.5 7 17 4.6e-07 0.00048 20.4 2.3 1 23 332 354 332 354 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF540-207 - 637 1.9e-77 251.6 134.5 8 17 2.1e-07 0.00022 21.5 0.6 1 23 360 382 360 382 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF540-207 - 637 1.9e-77 251.6 134.5 9 17 1.4e-06 0.0015 18.9 0.2 1 23 388 410 388 410 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF540-207 - 637 1.9e-77 251.6 134.5 10 17 6e-06 0.0064 16.9 0.3 1 23 416 438 416 438 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF540-207 - 637 1.9e-77 251.6 134.5 11 17 6.6e-06 0.007 16.8 0.9 1 23 444 466 444 466 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF540-207 - 637 1.9e-77 251.6 134.5 12 17 9.5e-06 0.01 16.3 1.9 1 23 472 494 472 494 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF540-207 - 637 1.9e-77 251.6 134.5 13 17 6.5e-09 6.9e-06 26.2 0.4 1 23 500 522 500 522 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF540-207 - 637 1.9e-77 251.6 134.5 14 17 3.5e-08 3.6e-05 24.0 1.1 1 23 528 550 528 550 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF540-207 - 637 1.9e-77 251.6 134.5 15 17 2.2e-09 2.3e-06 27.7 0.5 1 23 556 578 556 578 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF540-207 - 637 1.9e-77 251.6 134.5 16 17 5.5e-08 5.8e-05 23.3 1.6 1 23 584 606 584 606 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF540-207 - 637 1.9e-77 251.6 134.5 17 17 1.3e-06 0.0014 19.0 4.8 1 23 612 634 612 634 0.99 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZNF540-207 - 637 5e-44 145.1 127.7 1 17 0.0011 1.2 10.2 0.9 3 23 166 186 164 187 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF540-207 - 637 5e-44 145.1 127.7 2 17 0.0046 4.8 8.3 5.6 2 23 193 214 192 215 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF540-207 - 637 5e-44 145.1 127.7 3 17 6.6e-06 0.007 17.1 0.5 1 23 220 242 220 243 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF540-207 - 637 5e-44 145.1 127.7 4 17 0.00026 0.27 12.2 1.3 1 23 248 270 248 271 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF540-207 - 637 5e-44 145.1 127.7 5 17 0.0014 1.5 9.9 0.7 1 23 276 298 276 299 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF540-207 - 637 5e-44 145.1 127.7 6 17 6.9e-06 0.0073 17.1 1.3 1 23 304 326 304 327 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF540-207 - 637 5e-44 145.1 127.7 7 17 6.8e-05 0.072 14.0 1.1 1 23 332 354 332 355 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF540-207 - 637 5e-44 145.1 127.7 8 17 1.4e-05 0.014 16.2 0.4 1 23 360 382 360 383 0.91 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF540-207 - 637 5e-44 145.1 127.7 9 17 2.2e-05 0.023 15.5 0.3 1 23 388 410 388 411 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF540-207 - 637 5e-44 145.1 127.7 10 17 0.0018 1.9 9.5 0.4 1 23 416 438 416 439 0.88 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF540-207 - 637 5e-44 145.1 127.7 11 17 0.00021 0.22 12.4 0.8 1 23 444 466 444 467 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF540-207 - 637 5e-44 145.1 127.7 12 17 0.0054 5.7 8.1 1.3 1 23 472 494 472 495 0.88 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF540-207 - 637 5e-44 145.1 127.7 13 17 8.4e-06 0.0089 16.8 0.3 1 23 500 522 500 523 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF540-207 - 637 5e-44 145.1 127.7 14 17 6.3e-05 0.066 14.1 0.7 3 23 530 550 528 551 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF540-207 - 637 5e-44 145.1 127.7 15 17 5.1e-06 0.0054 17.5 0.4 1 23 556 578 556 579 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF540-207 - 637 5e-44 145.1 127.7 16 17 0.00013 0.13 13.1 1.3 1 23 584 606 584 607 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF540-207 - 637 5e-44 145.1 127.7 17 17 2.3e-05 0.024 15.4 3.6 1 23 612 634 612 635 0.97 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF540-207 - 637 1.5e-23 82.2 132.6 1 17 0.011 12 6.1 1.2 2 22 164 184 163 188 0.82 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF540-207 - 637 1.5e-23 82.2 132.6 2 17 0.065 68 3.6 1.6 3 15 193 205 193 215 0.77 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF540-207 - 637 1.5e-23 82.2 132.6 3 17 2.9e-05 0.031 14.3 0.6 2 24 220 242 220 244 0.87 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF540-207 - 637 1.5e-23 82.2 132.6 4 17 0.018 19 5.4 1.5 2 24 248 270 248 273 0.89 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF540-207 - 637 1.5e-23 82.2 132.6 5 17 7e-05 0.074 13.1 0.7 2 12 276 286 275 287 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF540-207 - 637 1.5e-23 82.2 132.6 6 17 0.001 1.1 9.4 1.3 2 12 304 314 304 324 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF540-207 - 637 1.5e-23 82.2 132.6 7 17 0.0002 0.21 11.7 4.4 2 24 332 354 332 357 0.90 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF540-207 - 637 1.5e-23 82.2 132.6 8 17 6.5e-05 0.069 13.2 0.5 2 12 360 370 360 382 0.84 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF540-207 - 637 1.5e-23 82.2 132.6 9 17 0.00056 0.6 10.2 0.3 2 24 388 410 388 413 0.88 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF540-207 - 637 1.5e-23 82.2 132.6 10 17 0.00085 0.89 9.6 0.2 2 11 416 425 416 438 0.87 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF540-207 - 637 1.5e-23 82.2 132.6 11 17 0.00028 0.29 11.2 1.3 2 12 444 454 444 454 0.95 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF540-207 - 637 1.5e-23 82.2 132.6 12 17 0.13 1.4e+02 2.6 1.0 2 12 472 482 472 495 0.79 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF540-207 - 637 1.5e-23 82.2 132.6 13 17 0.00032 0.33 11.0 0.8 2 24 500 522 500 524 0.88 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF540-207 - 637 1.5e-23 82.2 132.6 14 17 0.0011 1.2 9.2 1.0 2 12 528 538 528 539 0.89 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF540-207 - 637 1.5e-23 82.2 132.6 15 17 2e-05 0.021 14.8 0.3 2 24 556 578 556 581 0.89 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF540-207 - 637 1.5e-23 82.2 132.6 16 17 0.0019 2 8.5 2.7 2 24 584 602 584 605 0.77 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF540-207 - 637 1.5e-23 82.2 132.6 17 17 0.0019 2 8.5 5.4 2 24 612 634 612 635 0.96 C2H2-type zinc finger Zn-ribbon_8 PF09723.10 40 ZNF540-207 - 637 1.9e-22 79.1 89.7 1 14 0.013 13 6.0 0.1 21 36 156 173 146 177 0.58 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF540-207 - 637 1.9e-22 79.1 89.7 2 14 0.00088 0.93 9.7 4.6 8 34 166 199 161 203 0.91 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF540-207 - 637 1.9e-22 79.1 89.7 3 14 0.078 82 3.4 1.6 7 16 193 202 191 209 0.87 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF540-207 - 637 1.9e-22 79.1 89.7 4 14 3.6e-06 0.0038 17.3 1.7 6 34 220 255 219 261 0.92 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF540-207 - 637 1.9e-22 79.1 89.7 5 14 0.00011 0.12 12.5 6.8 6 34 276 311 275 314 0.81 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF540-207 - 637 1.9e-22 79.1 89.7 6 14 8.5e-05 0.089 12.9 6.6 6 36 304 341 303 345 0.92 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF540-207 - 637 1.9e-22 79.1 89.7 7 14 0.0043 4.5 7.5 0.7 6 16 332 342 331 354 0.88 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF540-207 - 637 1.9e-22 79.1 89.7 8 14 0.0025 2.7 8.2 3.4 6 33 360 394 359 397 0.65 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF540-207 - 637 1.9e-22 79.1 89.7 9 14 0.0023 2.4 8.3 2.5 6 34 388 423 385 431 0.83 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF540-207 - 637 1.9e-22 79.1 89.7 10 14 0.00023 0.24 11.6 0.1 6 22 444 460 443 467 0.86 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF540-207 - 637 1.9e-22 79.1 89.7 11 14 4.5e-06 0.0048 17.0 2.1 6 36 472 509 471 512 0.90 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF540-207 - 637 1.9e-22 79.1 89.7 12 14 1.4e-05 0.015 15.4 4.3 6 38 528 567 527 569 0.90 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF540-207 - 637 1.9e-22 79.1 89.7 13 14 4.6e-06 0.0049 17.0 3.6 6 35 556 592 555 594 0.91 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF540-207 - 637 1.9e-22 79.1 89.7 14 14 5.1e-05 0.054 13.6 2.8 6 37 584 622 583 624 0.91 Zinc ribbon domain zf_UBZ PF18439.1 32 ZNF540-207 - 637 1.5e-14 53.3 75.4 1 17 0.15 1.6e+02 2.0 0.1 4 13 165 174 163 183 0.78 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF540-207 - 637 1.5e-14 53.3 75.4 2 17 0.0018 1.9 8.1 1.3 4 24 193 214 190 215 0.86 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF540-207 - 637 1.5e-14 53.3 75.4 3 17 0.0033 3.5 7.3 0.2 3 20 220 238 218 239 0.79 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF540-207 - 637 1.5e-14 53.3 75.4 4 17 0.084 89 2.8 0.1 3 20 248 266 246 267 0.81 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF540-207 - 637 1.5e-14 53.3 75.4 5 17 0.0025 2.6 7.7 0.3 2 20 275 294 274 295 0.80 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF540-207 - 637 1.5e-14 53.3 75.4 6 17 0.008 8.4 6.1 0.6 3 20 304 322 302 323 0.79 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF540-207 - 637 1.5e-14 53.3 75.4 7 17 0.002 2.1 8.0 0.1 3 20 332 350 330 351 0.89 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF540-207 - 637 1.5e-14 53.3 75.4 8 17 0.003 3.1 7.5 0.1 3 20 360 378 358 379 0.82 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF540-207 - 637 1.5e-14 53.3 75.4 9 17 2.4 2.5e+03 -1.8 0.0 3 15 388 400 387 407 0.75 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF540-207 - 637 1.5e-14 53.3 75.4 10 17 0.0095 10 5.8 0.1 3 21 416 435 414 435 0.79 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF540-207 - 637 1.5e-14 53.3 75.4 11 17 0.011 12 5.6 0.1 3 13 444 454 442 462 0.84 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF540-207 - 637 1.5e-14 53.3 75.4 12 17 0.015 16 5.2 0.0 3 20 472 490 470 491 0.81 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF540-207 - 637 1.5e-14 53.3 75.4 13 17 0.0038 4 7.1 0.1 3 20 500 518 498 519 0.86 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF540-207 - 637 1.5e-14 53.3 75.4 14 17 6e-05 0.063 12.9 0.2 3 21 528 547 526 547 0.95 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF540-207 - 637 1.5e-14 53.3 75.4 15 17 0.0033 3.5 7.3 0.1 3 18 556 572 554 575 0.80 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF540-207 - 637 1.5e-14 53.3 75.4 16 17 0.002 2.1 8.0 0.4 3 21 584 603 582 603 0.92 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF540-207 - 637 1.5e-14 53.3 75.4 17 17 5 5.3e+03 -2.9 0.3 3 12 612 621 611 625 0.84 Ubiquitin-Binding Zinc Finger XPA_N PF01286.18 32 ZNF540-207 - 637 1.1e-13 50.9 80.4 1 17 0.007 7.4 6.7 0.1 3 13 165 175 163 180 0.83 XPA protein N-terminal XPA_N PF01286.18 32 ZNF540-207 - 637 1.1e-13 50.9 80.4 2 17 0.0029 3 8.0 1.0 3 15 193 205 192 211 0.91 XPA protein N-terminal XPA_N PF01286.18 32 ZNF540-207 - 637 1.1e-13 50.9 80.4 3 17 0.0064 6.7 6.8 0.2 3 12 221 230 219 231 0.89 XPA protein N-terminal XPA_N PF01286.18 32 ZNF540-207 - 637 1.1e-13 50.9 80.4 4 17 0.26 2.8e+02 1.7 0.3 3 11 249 257 247 259 0.88 XPA protein N-terminal XPA_N PF01286.18 32 ZNF540-207 - 637 1.1e-13 50.9 80.4 5 17 0.012 13 5.9 0.6 3 18 277 292 276 295 0.86 XPA protein N-terminal XPA_N PF01286.18 32 ZNF540-207 - 637 1.1e-13 50.9 80.4 6 17 0.011 12 6.1 0.2 3 12 305 314 303 315 0.88 XPA protein N-terminal XPA_N PF01286.18 32 ZNF540-207 - 637 1.1e-13 50.9 80.4 7 17 3.2e-05 0.033 14.2 0.2 3 18 333 348 331 351 0.91 XPA protein N-terminal XPA_N PF01286.18 32 ZNF540-207 - 637 1.1e-13 50.9 80.4 8 17 0.016 17 5.6 0.3 3 11 361 369 359 371 0.88 XPA protein N-terminal XPA_N PF01286.18 32 ZNF540-207 - 637 1.1e-13 50.9 80.4 9 17 0.19 2e+02 2.1 0.2 20 27 388 395 385 400 0.71 XPA protein N-terminal XPA_N PF01286.18 32 ZNF540-207 - 637 1.1e-13 50.9 80.4 10 17 0.0034 3.5 7.7 0.1 3 12 417 426 415 434 0.85 XPA protein N-terminal XPA_N PF01286.18 32 ZNF540-207 - 637 1.1e-13 50.9 80.4 11 17 0.011 12 6.1 0.2 3 11 445 453 443 455 0.89 XPA protein N-terminal XPA_N PF01286.18 32 ZNF540-207 - 637 1.1e-13 50.9 80.4 12 17 0.044 47 4.2 0.1 3 18 473 488 471 490 0.84 XPA protein N-terminal XPA_N PF01286.18 32 ZNF540-207 - 637 1.1e-13 50.9 80.4 13 17 0.01 11 6.2 0.2 3 11 501 509 499 511 0.89 XPA protein N-terminal XPA_N PF01286.18 32 ZNF540-207 - 637 1.1e-13 50.9 80.4 14 17 0.019 20 5.3 0.3 3 12 529 538 527 539 0.88 XPA protein N-terminal XPA_N PF01286.18 32 ZNF540-207 - 637 1.1e-13 50.9 80.4 15 17 0.002 2.1 8.5 0.1 3 14 557 568 555 569 0.90 XPA protein N-terminal XPA_N PF01286.18 32 ZNF540-207 - 637 1.1e-13 50.9 80.4 16 17 0.035 37 4.5 0.1 3 12 585 594 583 602 0.78 XPA protein N-terminal XPA_N PF01286.18 32 ZNF540-207 - 637 1.1e-13 50.9 80.4 17 17 0.35 3.7e+02 1.3 0.1 20 27 612 619 610 629 0.75 XPA protein N-terminal zf-C2H2_jaz PF12171.8 27 ZNF540-207 - 637 1.4e-13 50.8 85.7 1 17 0.002 2.1 8.8 1.3 2 22 164 184 163 184 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF540-207 - 637 1.4e-13 50.8 85.7 2 17 0.05 52 4.3 0.7 4 22 194 212 193 212 0.91 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF540-207 - 637 1.4e-13 50.8 85.7 3 17 0.025 27 5.2 0.1 2 11 220 229 219 230 0.91 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF540-207 - 637 1.4e-13 50.8 85.7 4 17 0.0016 1.7 9.1 0.2 2 22 248 268 247 268 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF540-207 - 637 1.4e-13 50.8 85.7 5 17 0.046 48 4.4 1.4 2 21 276 295 275 296 0.77 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF540-207 - 637 1.4e-13 50.8 85.7 6 17 0.092 97 3.4 0.5 2 12 304 314 303 324 0.84 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF540-207 - 637 1.4e-13 50.8 85.7 7 17 0.008 8.4 6.8 0.2 2 23 332 353 331 355 0.76 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF540-207 - 637 1.4e-13 50.8 85.7 8 17 0.0053 5.5 7.4 0.1 2 21 360 379 359 380 0.84 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF540-207 - 637 1.4e-13 50.8 85.7 9 17 0.019 20 5.6 0.1 2 16 388 402 387 406 0.75 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF540-207 - 637 1.4e-13 50.8 85.7 10 17 0.12 1.3e+02 3.0 0.1 2 11 416 425 415 436 0.80 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF540-207 - 637 1.4e-13 50.8 85.7 11 17 0.014 15 6.0 0.1 2 12 444 454 443 464 0.81 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF540-207 - 637 1.4e-13 50.8 85.7 12 17 0.99 1e+03 0.1 0.3 2 11 472 481 471 482 0.89 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF540-207 - 637 1.4e-13 50.8 85.7 13 17 0.00012 0.13 12.6 0.0 2 22 500 520 499 520 0.95 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF540-207 - 637 1.4e-13 50.8 85.7 14 17 0.00016 0.17 12.2 0.1 2 22 528 548 527 548 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF540-207 - 637 1.4e-13 50.8 85.7 15 17 0.0028 3 8.2 0.0 2 22 556 576 555 576 0.91 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF540-207 - 637 1.4e-13 50.8 85.7 16 17 0.15 1.6e+02 2.8 0.2 2 21 584 603 583 604 0.80 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF540-207 - 637 1.4e-13 50.8 85.7 17 17 0.085 89 3.5 2.1 2 12 612 622 611 635 0.73 Zinc-finger double-stranded RNA-binding C1_4 PF07975.12 55 ZNF540-207 - 637 3.9e-07 30.2 78.3 1 14 1.2 1.3e+03 -0.3 1.2 22 48 160 186 146 193 0.67 TFIIH C1-like domain C1_4 PF07975.12 55 ZNF540-207 - 637 3.9e-07 30.2 78.3 2 14 0.59 6.2e+02 0.7 5.7 2 48 166 214 165 218 0.80 TFIIH C1-like domain C1_4 PF07975.12 55 ZNF540-207 - 637 3.9e-07 30.2 78.3 3 14 0.022 24 5.3 3.4 2 49 194 243 193 245 0.81 TFIIH C1-like domain C1_4 PF07975.12 55 ZNF540-207 - 637 3.9e-07 30.2 78.3 4 14 0.021 22 5.4 2.4 1 35 221 257 221 272 0.72 TFIIH C1-like domain C1_4 PF07975.12 55 ZNF540-207 - 637 3.9e-07 30.2 78.3 5 14 0.043 45 4.4 4.4 2 37 250 287 249 300 0.72 TFIIH C1-like domain C1_4 PF07975.12 55 ZNF540-207 - 637 3.9e-07 30.2 78.3 6 14 0.024 25 5.2 4.6 2 49 278 327 277 330 0.76 TFIIH C1-like domain C1_4 PF07975.12 55 ZNF540-207 - 637 3.9e-07 30.2 78.3 7 14 0.12 1.2e+02 3.0 4.6 1 36 305 342 305 355 0.80 TFIIH C1-like domain C1_4 PF07975.12 55 ZNF540-207 - 637 3.9e-07 30.2 78.3 8 14 0.0029 3 8.1 1.1 2 49 334 383 333 387 0.77 TFIIH C1-like domain C1_4 PF07975.12 55 ZNF540-207 - 637 3.9e-07 30.2 78.3 9 14 0.00029 0.31 11.3 0.8 1 49 361 411 361 414 0.80 TFIIH C1-like domain C1_4 PF07975.12 55 ZNF540-207 - 637 3.9e-07 30.2 78.3 10 14 0.0012 1.3 9.3 0.7 2 49 390 439 389 442 0.80 TFIIH C1-like domain C1_4 PF07975.12 55 ZNF540-207 - 637 3.9e-07 30.2 78.3 11 14 0.00043 0.45 10.8 0.7 2 49 418 467 417 469 0.79 TFIIH C1-like domain C1_4 PF07975.12 55 ZNF540-207 - 637 3.9e-07 30.2 78.3 12 14 0.026 27 5.1 1.1 1 35 473 509 473 524 0.81 TFIIH C1-like domain C1_4 PF07975.12 55 ZNF540-207 - 637 3.9e-07 30.2 78.3 13 14 3.4e-05 0.035 14.3 1.0 2 49 530 579 529 582 0.86 TFIIH C1-like domain C1_4 PF07975.12 55 ZNF540-207 - 637 3.9e-07 30.2 78.3 14 14 0.019 20 5.5 4.6 2 49 586 635 585 637 0.80 TFIIH C1-like domain # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF540-207.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF540-207.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF540-207.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF540-207.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF540-207.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:08:26 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF540-208.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF540-208.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF540-208.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF540-208.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF540-208.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:08:26 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF540-209.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF540-209.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF540-209.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF540-209.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF540-209.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:08:26 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZNF540-210 - 660 5.6e-121 390.1 145.5 1 18 0.037 35 5.0 0.5 13 26 178 198 162 198 0.63 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF540-210 - 660 5.6e-121 390.1 145.5 2 18 7.3e-07 0.00069 19.9 3.8 2 26 202 226 201 226 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF540-210 - 660 5.6e-121 390.1 145.5 3 18 2.9e-11 2.7e-08 33.8 1.0 2 25 230 253 229 253 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF540-210 - 660 5.6e-121 390.1 145.5 4 18 1.5e-10 1.4e-07 31.6 2.0 2 24 258 280 257 282 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF540-210 - 660 5.6e-121 390.1 145.5 5 18 1.3e-09 1.3e-06 28.6 1.4 2 24 286 308 285 308 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF540-210 - 660 5.6e-121 390.1 145.5 6 18 2.3e-10 2.2e-07 31.0 3.0 2 25 314 337 313 337 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF540-210 - 660 5.6e-121 390.1 145.5 7 18 2.5e-11 2.4e-08 34.1 1.3 2 24 342 364 341 365 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF540-210 - 660 5.6e-121 390.1 145.5 8 18 1.8e-09 1.7e-06 28.2 2.3 2 25 370 393 369 393 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF540-210 - 660 5.6e-121 390.1 145.5 9 18 2.8e-09 2.6e-06 27.6 0.6 2 25 398 421 397 422 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF540-210 - 660 5.6e-121 390.1 145.5 10 18 1.4e-11 1.3e-08 34.8 0.4 1 24 425 448 425 448 0.97 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF540-210 - 660 5.6e-121 390.1 145.5 11 18 2.6e-10 2.5e-07 30.8 1.3 2 24 454 476 454 477 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF540-210 - 660 5.6e-121 390.1 145.5 12 18 4.6e-06 0.0044 17.4 1.5 5 24 485 504 482 505 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF540-210 - 660 5.6e-121 390.1 145.5 13 18 1.6e-11 1.5e-08 34.6 1.0 2 24 510 532 509 534 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF540-210 - 660 5.6e-121 390.1 145.5 14 18 7.3e-09 6.9e-06 26.3 0.8 1 25 537 561 537 562 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF540-210 - 660 5.6e-121 390.1 145.5 15 18 5.7e-10 5.4e-07 29.8 1.9 3 25 567 589 565 590 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF540-210 - 660 5.6e-121 390.1 145.5 16 18 1.6e-11 1.5e-08 34.6 0.3 1 24 593 616 593 617 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF540-210 - 660 5.6e-121 390.1 145.5 17 18 1.1e-11 1e-08 35.2 2.0 1 25 621 645 621 646 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF540-210 - 660 5.6e-121 390.1 145.5 18 18 3.6 3.4e+03 -1.2 1.1 1 10 649 658 649 659 0.85 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZNF540-210 - 660 3.8e-77 250.7 134.5 1 17 2e-05 0.019 15.4 1.4 1 23 187 209 187 209 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF540-210 - 660 3.8e-77 250.7 134.5 2 17 1.2e-06 0.0011 19.3 6.0 2 23 216 237 215 237 0.95 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF540-210 - 660 3.8e-77 250.7 134.5 3 17 6.5e-07 0.00061 20.1 0.6 1 23 243 265 243 265 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF540-210 - 660 3.8e-77 250.7 134.5 4 17 3.8e-05 0.036 14.5 1.9 1 23 271 293 271 293 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF540-210 - 660 3.8e-77 250.7 134.5 5 17 0.00022 0.21 12.1 0.5 1 23 299 321 299 321 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF540-210 - 660 3.8e-77 250.7 134.5 6 17 7.4e-08 7e-05 23.1 1.1 1 23 327 349 327 349 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF540-210 - 660 3.8e-77 250.7 134.5 7 17 5.3e-07 0.0005 20.4 2.3 1 23 355 377 355 377 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF540-210 - 660 3.8e-77 250.7 134.5 8 17 2.4e-07 0.00023 21.5 0.6 1 23 383 405 383 405 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF540-210 - 660 3.8e-77 250.7 134.5 9 17 1.6e-06 0.0015 18.8 0.2 1 23 411 433 411 433 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF540-210 - 660 3.8e-77 250.7 134.5 10 17 7e-06 0.0066 16.8 0.3 1 23 439 461 439 461 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF540-210 - 660 3.8e-77 250.7 134.5 11 17 7.7e-06 0.0073 16.7 0.9 1 23 467 489 467 489 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF540-210 - 660 3.8e-77 250.7 134.5 12 17 1.1e-05 0.01 16.2 1.9 1 23 495 517 495 517 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF540-210 - 660 3.8e-77 250.7 134.5 13 17 7.6e-09 7.2e-06 26.2 0.4 1 23 523 545 523 545 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF540-210 - 660 3.8e-77 250.7 134.5 14 17 4e-08 3.8e-05 23.9 1.1 1 23 551 573 551 573 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF540-210 - 660 3.8e-77 250.7 134.5 15 17 2.6e-09 2.4e-06 27.7 0.5 1 23 579 601 579 601 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF540-210 - 660 3.8e-77 250.7 134.5 16 17 6.4e-08 6.1e-05 23.3 1.6 1 23 607 629 607 629 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF540-210 - 660 3.8e-77 250.7 134.5 17 17 1.5e-06 0.0014 18.9 4.8 1 23 635 657 635 657 0.99 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZNF540-210 - 660 1e-43 144.2 127.7 1 17 0.0013 1.2 10.1 0.9 3 23 189 209 187 210 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF540-210 - 660 1e-43 144.2 127.7 2 17 0.0053 5 8.2 5.6 2 23 216 237 215 238 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF540-210 - 660 1e-43 144.2 127.7 3 17 7.7e-06 0.0073 17.1 0.5 1 23 243 265 243 266 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF540-210 - 660 1e-43 144.2 127.7 4 17 0.0003 0.28 12.1 1.3 1 23 271 293 271 294 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF540-210 - 660 1e-43 144.2 127.7 5 17 0.0016 1.5 9.8 0.7 1 23 299 321 299 322 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF540-210 - 660 1e-43 144.2 127.7 6 17 8.1e-06 0.0076 17.0 1.3 1 23 327 349 327 350 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF540-210 - 660 1e-43 144.2 127.7 7 17 8e-05 0.075 13.9 1.1 1 23 355 377 355 378 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF540-210 - 660 1e-43 144.2 127.7 8 17 1.6e-05 0.015 16.1 0.4 1 23 383 405 383 406 0.91 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF540-210 - 660 1e-43 144.2 127.7 9 17 2.5e-05 0.024 15.5 0.3 1 23 411 433 411 434 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF540-210 - 660 1e-43 144.2 127.7 10 17 0.0021 2 9.5 0.4 1 23 439 461 439 462 0.88 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF540-210 - 660 1e-43 144.2 127.7 11 17 0.00025 0.23 12.4 0.8 1 23 467 489 467 490 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF540-210 - 660 1e-43 144.2 127.7 12 17 0.0063 5.9 8.0 1.3 1 23 495 517 495 518 0.88 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF540-210 - 660 1e-43 144.2 127.7 13 17 9.8e-06 0.0092 16.7 0.3 1 23 523 545 523 546 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF540-210 - 660 1e-43 144.2 127.7 14 17 7.3e-05 0.069 14.0 0.7 3 23 553 573 551 574 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF540-210 - 660 1e-43 144.2 127.7 15 17 5.9e-06 0.0056 17.4 0.4 1 23 579 601 579 602 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF540-210 - 660 1e-43 144.2 127.7 16 17 0.00015 0.14 13.1 1.3 1 23 607 629 607 630 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF540-210 - 660 1e-43 144.2 127.7 17 17 2.7e-05 0.025 15.4 3.6 1 23 635 657 635 658 0.97 C2H2-type zinc finger KRAB PF01352.27 42 ZNF540-210 - 660 5.4e-26 90.0 0.3 1 1 1.1e-28 1.1e-25 89.0 0.3 1 42 5 46 5 46 0.99 KRAB box zf-C2H2_6 PF13912.6 27 ZNF540-210 - 660 2.7e-23 81.4 132.5 1 17 0.013 12 6.0 1.2 2 22 187 207 186 211 0.82 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF540-210 - 660 2.7e-23 81.4 132.5 2 17 0.075 71 3.6 1.6 3 15 216 228 216 238 0.77 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF540-210 - 660 2.7e-23 81.4 132.5 3 17 3.4e-05 0.032 14.2 0.6 2 24 243 265 243 267 0.87 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF540-210 - 660 2.7e-23 81.4 132.5 4 17 0.021 20 5.3 1.5 2 24 271 293 271 296 0.89 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF540-210 - 660 2.7e-23 81.4 132.5 5 17 8.2e-05 0.077 13.0 0.7 2 12 299 309 298 310 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF540-210 - 660 2.7e-23 81.4 132.5 6 17 0.0012 1.1 9.3 1.3 2 12 327 337 327 347 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF540-210 - 660 2.7e-23 81.4 132.5 7 17 0.00023 0.22 11.6 4.4 2 24 355 377 355 380 0.90 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF540-210 - 660 2.7e-23 81.4 132.5 8 17 7.6e-05 0.072 13.1 0.5 2 12 383 393 383 405 0.84 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF540-210 - 660 2.7e-23 81.4 132.5 9 17 0.00066 0.62 10.1 0.3 2 24 411 433 411 436 0.88 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF540-210 - 660 2.7e-23 81.4 132.5 10 17 0.00099 0.93 9.6 0.2 2 11 439 448 439 461 0.87 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF540-210 - 660 2.7e-23 81.4 132.5 11 17 0.00032 0.3 11.1 1.3 2 12 467 477 467 477 0.95 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF540-210 - 660 2.7e-23 81.4 132.5 12 17 0.15 1.5e+02 2.6 1.0 2 12 495 505 495 518 0.79 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF540-210 - 660 2.7e-23 81.4 132.5 13 17 0.00037 0.35 10.9 0.8 2 24 523 545 523 547 0.88 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF540-210 - 660 2.7e-23 81.4 132.5 14 17 0.0013 1.2 9.2 1.0 2 12 551 561 551 562 0.89 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF540-210 - 660 2.7e-23 81.4 132.5 15 17 2.3e-05 0.022 14.8 0.3 2 24 579 601 579 604 0.89 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF540-210 - 660 2.7e-23 81.4 132.5 16 17 0.002 1.9 8.6 2.6 2 24 607 625 607 628 0.77 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF540-210 - 660 2.7e-23 81.4 132.5 17 17 0.0022 2.1 8.4 5.4 2 24 635 657 635 658 0.96 C2H2-type zinc finger Zn-ribbon_8 PF09723.10 40 ZNF540-210 - 660 3.2e-22 78.3 89.9 1 14 0.014 14 5.9 0.1 21 36 179 196 169 200 0.58 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF540-210 - 660 3.2e-22 78.3 89.9 2 14 0.00095 0.89 9.7 4.5 8 34 189 222 184 226 0.91 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF540-210 - 660 3.2e-22 78.3 89.9 3 14 0.093 88 3.3 1.6 7 16 216 225 215 232 0.87 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF540-210 - 660 3.2e-22 78.3 89.9 4 14 4.2e-06 0.004 17.2 1.7 6 34 243 278 242 284 0.92 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF540-210 - 660 3.2e-22 78.3 89.9 5 14 0.00012 0.12 12.6 6.7 6 34 299 334 298 337 0.81 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF540-210 - 660 3.2e-22 78.3 89.9 6 14 9.9e-05 0.093 12.9 6.6 6 36 327 364 325 368 0.92 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF540-210 - 660 3.2e-22 78.3 89.9 7 14 0.0045 4.2 7.6 0.6 6 16 355 365 352 377 0.89 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF540-210 - 660 3.2e-22 78.3 89.9 8 14 0.0039 3.7 7.8 3.8 6 33 383 417 382 420 0.65 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF540-210 - 660 3.2e-22 78.3 89.9 9 14 0.0031 2.9 8.1 2.6 6 34 411 446 408 453 0.83 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF540-210 - 660 3.2e-22 78.3 89.9 10 14 0.00026 0.25 11.5 0.1 6 22 467 483 466 490 0.86 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF540-210 - 660 3.2e-22 78.3 89.9 11 14 5.3e-06 0.005 16.9 2.1 6 36 495 532 494 535 0.90 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF540-210 - 660 3.2e-22 78.3 89.9 12 14 1.7e-05 0.016 15.3 4.3 6 38 551 590 550 592 0.90 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF540-210 - 660 3.2e-22 78.3 89.9 13 14 5.5e-06 0.0052 16.9 3.6 6 35 579 615 578 617 0.91 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF540-210 - 660 3.2e-22 78.3 89.9 14 14 6e-05 0.056 13.6 2.8 6 37 607 645 606 647 0.91 Zinc ribbon domain zf_UBZ PF18439.1 32 ZNF540-210 - 660 3.5e-14 52.1 75.8 1 17 0.17 1.6e+02 2.0 0.1 4 13 188 197 186 206 0.78 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF540-210 - 660 3.5e-14 52.1 75.8 2 17 0.0021 2 8.1 1.3 4 24 216 237 213 238 0.86 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF540-210 - 660 3.5e-14 52.1 75.8 3 17 0.0039 3.6 7.2 0.2 3 20 243 261 241 262 0.79 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF540-210 - 660 3.5e-14 52.1 75.8 4 17 0.098 92 2.8 0.1 3 20 271 289 269 290 0.81 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF540-210 - 660 3.5e-14 52.1 75.8 5 17 0.0029 2.8 7.6 0.3 2 20 298 317 297 318 0.80 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF540-210 - 660 3.5e-14 52.1 75.8 6 17 0.0093 8.7 6.0 0.6 3 20 327 345 325 346 0.79 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF540-210 - 660 3.5e-14 52.1 75.8 7 17 0.0023 2.2 8.0 0.1 3 20 355 373 353 374 0.89 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF540-210 - 660 3.5e-14 52.1 75.8 8 17 0.0034 3.2 7.4 0.1 3 20 383 401 381 402 0.82 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF540-210 - 660 3.5e-14 52.1 75.8 9 17 2.8 2.6e+03 -1.9 0.0 3 15 411 423 410 430 0.75 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF540-210 - 660 3.5e-14 52.1 75.8 10 17 0.011 10 5.8 0.1 3 21 439 458 437 458 0.79 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF540-210 - 660 3.5e-14 52.1 75.8 11 17 0.013 12 5.6 0.1 3 13 467 477 465 485 0.84 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF540-210 - 660 3.5e-14 52.1 75.8 12 17 0.018 17 5.1 0.0 3 20 495 513 493 514 0.81 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF540-210 - 660 3.5e-14 52.1 75.8 13 17 0.0045 4.2 7.0 0.1 3 20 523 541 521 542 0.86 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF540-210 - 660 3.5e-14 52.1 75.8 14 17 7e-05 0.066 12.8 0.2 3 21 551 570 549 570 0.95 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF540-210 - 660 3.5e-14 52.1 75.8 15 17 0.0039 3.7 7.2 0.1 3 18 579 595 577 598 0.80 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF540-210 - 660 3.5e-14 52.1 75.8 16 17 0.0024 2.2 7.9 0.4 3 21 607 626 605 626 0.92 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF540-210 - 660 3.5e-14 52.1 75.8 17 17 6.3 6e+03 -3.0 0.3 3 12 635 644 634 647 0.84 Ubiquitin-Binding Zinc Finger XPA_N PF01286.18 32 ZNF540-210 - 660 2.3e-13 49.9 80.4 1 17 0.0082 7.7 6.7 0.1 3 13 188 198 186 203 0.83 XPA protein N-terminal XPA_N PF01286.18 32 ZNF540-210 - 660 2.3e-13 49.9 80.4 2 17 0.0033 3.1 7.9 1.0 3 15 216 228 215 234 0.91 XPA protein N-terminal XPA_N PF01286.18 32 ZNF540-210 - 660 2.3e-13 49.9 80.4 3 17 0.0074 7 6.8 0.2 3 12 244 253 242 254 0.89 XPA protein N-terminal XPA_N PF01286.18 32 ZNF540-210 - 660 2.3e-13 49.9 80.4 4 17 0.31 2.9e+02 1.6 0.3 3 11 272 280 270 282 0.88 XPA protein N-terminal XPA_N PF01286.18 32 ZNF540-210 - 660 2.3e-13 49.9 80.4 5 17 0.014 14 5.9 0.6 3 18 300 315 299 318 0.86 XPA protein N-terminal XPA_N PF01286.18 32 ZNF540-210 - 660 2.3e-13 49.9 80.4 6 17 0.013 12 6.0 0.2 3 12 328 337 326 338 0.88 XPA protein N-terminal XPA_N PF01286.18 32 ZNF540-210 - 660 2.3e-13 49.9 80.4 7 17 3.7e-05 0.035 14.2 0.2 3 18 356 371 354 374 0.91 XPA protein N-terminal XPA_N PF01286.18 32 ZNF540-210 - 660 2.3e-13 49.9 80.4 8 17 0.019 17 5.5 0.3 3 11 384 392 382 394 0.88 XPA protein N-terminal XPA_N PF01286.18 32 ZNF540-210 - 660 2.3e-13 49.9 80.4 9 17 0.23 2.1e+02 2.0 0.2 20 27 411 418 408 423 0.71 XPA protein N-terminal XPA_N PF01286.18 32 ZNF540-210 - 660 2.3e-13 49.9 80.4 10 17 0.0039 3.7 7.7 0.1 3 12 440 449 438 457 0.85 XPA protein N-terminal XPA_N PF01286.18 32 ZNF540-210 - 660 2.3e-13 49.9 80.4 11 17 0.013 12 6.0 0.2 3 11 468 476 466 478 0.89 XPA protein N-terminal XPA_N PF01286.18 32 ZNF540-210 - 660 2.3e-13 49.9 80.4 12 17 0.051 48 4.1 0.1 3 18 496 511 494 513 0.84 XPA protein N-terminal XPA_N PF01286.18 32 ZNF540-210 - 660 2.3e-13 49.9 80.4 13 17 0.012 11 6.1 0.2 3 11 524 532 522 534 0.89 XPA protein N-terminal XPA_N PF01286.18 32 ZNF540-210 - 660 2.3e-13 49.9 80.4 14 17 0.022 21 5.3 0.3 3 12 552 561 550 562 0.88 XPA protein N-terminal XPA_N PF01286.18 32 ZNF540-210 - 660 2.3e-13 49.9 80.4 15 17 0.0023 2.2 8.4 0.1 3 14 580 591 578 592 0.90 XPA protein N-terminal XPA_N PF01286.18 32 ZNF540-210 - 660 2.3e-13 49.9 80.4 16 17 0.041 39 4.4 0.1 3 12 608 617 606 625 0.78 XPA protein N-terminal XPA_N PF01286.18 32 ZNF540-210 - 660 2.3e-13 49.9 80.4 17 17 0.4 3.8e+02 1.2 0.1 20 27 635 642 633 652 0.75 XPA protein N-terminal zf-C2H2_jaz PF12171.8 27 ZNF540-210 - 660 2.8e-13 49.8 85.7 1 17 0.0023 2.1 8.7 1.3 2 22 187 207 186 207 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF540-210 - 660 2.8e-13 49.8 85.7 2 17 0.058 55 4.2 0.7 4 22 217 235 216 235 0.91 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF540-210 - 660 2.8e-13 49.8 85.7 3 17 0.029 28 5.2 0.1 2 11 243 252 242 253 0.91 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF540-210 - 660 2.8e-13 49.8 85.7 4 17 0.0018 1.7 9.0 0.2 2 22 271 291 270 291 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF540-210 - 660 2.8e-13 49.8 85.7 5 17 0.053 50 4.3 1.4 2 21 299 318 298 319 0.77 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF540-210 - 660 2.8e-13 49.8 85.7 6 17 0.11 1e+02 3.4 0.5 2 12 327 337 326 347 0.84 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF540-210 - 660 2.8e-13 49.8 85.7 7 17 0.0093 8.7 6.8 0.2 2 23 355 376 354 378 0.76 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF540-210 - 660 2.8e-13 49.8 85.7 8 17 0.0061 5.8 7.3 0.1 2 21 383 402 382 403 0.84 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF540-210 - 660 2.8e-13 49.8 85.7 9 17 0.022 21 5.6 0.1 2 15 411 424 410 429 0.75 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF540-210 - 660 2.8e-13 49.8 85.7 10 17 0.14 1.4e+02 3.0 0.1 2 11 439 448 438 459 0.80 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF540-210 - 660 2.8e-13 49.8 85.7 11 17 0.016 15 6.0 0.1 2 12 467 477 466 487 0.81 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF540-210 - 660 2.8e-13 49.8 85.7 12 17 1.1 1.1e+03 0.1 0.3 2 11 495 504 494 505 0.89 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF540-210 - 660 2.8e-13 49.8 85.7 13 17 0.00014 0.14 12.5 0.0 2 22 523 543 522 543 0.95 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF540-210 - 660 2.8e-13 49.8 85.7 14 17 0.00019 0.18 12.1 0.1 2 22 551 571 550 571 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF540-210 - 660 2.8e-13 49.8 85.7 15 17 0.0033 3.1 8.2 0.0 2 22 579 599 578 599 0.91 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF540-210 - 660 2.8e-13 49.8 85.7 16 17 0.17 1.6e+02 2.7 0.2 2 21 607 626 606 627 0.80 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF540-210 - 660 2.8e-13 49.8 85.7 17 17 0.098 93 3.5 2.1 2 12 635 645 634 658 0.73 Zinc-finger double-stranded RNA-binding # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF540-210.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF540-210.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF540-210.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF540-210.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF540-210.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:08:27 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZNF543-201 - 600 8.3e-110 354.8 93.3 1 14 0.00088 0.69 10.5 1.6 12 26 196 210 193 210 0.85 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF543-201 - 600 8.3e-110 354.8 93.3 2 14 2.8e-10 2.2e-07 31.0 0.7 2 25 214 237 214 238 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF543-201 - 600 8.3e-110 354.8 93.3 3 14 4.1e-11 3.2e-08 33.6 0.5 1 25 241 265 241 266 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF543-201 - 600 8.3e-110 354.8 93.3 4 14 6.4e-12 5e-09 36.2 3.5 1 26 269 294 269 294 0.97 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF543-201 - 600 8.3e-110 354.8 93.3 5 14 1.5e-08 1.2e-05 25.5 2.7 4 24 300 320 298 321 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF543-201 - 600 8.3e-110 354.8 93.3 6 14 6.7e-11 5.2e-08 33.0 0.2 3 25 327 349 325 350 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF543-201 - 600 8.3e-110 354.8 93.3 7 14 1.9e-09 1.5e-06 28.4 0.1 2 24 354 376 353 376 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF543-201 - 600 8.3e-110 354.8 93.3 8 14 1.1e-10 8.2e-08 32.3 0.1 2 25 382 405 381 406 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF543-201 - 600 8.3e-110 354.8 93.3 9 14 1.5e-12 1.2e-09 38.2 2.9 1 26 409 434 409 434 0.97 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF543-201 - 600 8.3e-110 354.8 93.3 10 14 5.6e-11 4.4e-08 33.2 1.5 4 25 440 461 438 462 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF543-201 - 600 8.3e-110 354.8 93.3 11 14 3.5e-11 2.7e-08 33.9 0.1 1 25 465 489 465 490 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF543-201 - 600 8.3e-110 354.8 93.3 12 14 2.1e-11 1.6e-08 34.6 0.6 1 24 493 516 493 516 0.98 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF543-201 - 600 8.3e-110 354.8 93.3 13 14 4.1e-12 3.2e-09 36.8 0.1 1 25 521 545 521 546 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF543-201 - 600 8.3e-110 354.8 93.3 14 14 0.035 27 5.4 0.4 2 14 550 562 549 566 0.87 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZNF543-201 - 600 9.1e-71 230.6 97.4 1 13 4e-08 3.1e-05 24.2 0.2 1 23 199 221 199 221 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF543-201 - 600 9.1e-71 230.6 97.4 2 13 2.1e-07 0.00016 21.9 1.2 1 23 227 249 227 249 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF543-201 - 600 9.1e-71 230.6 97.4 3 13 1.6e-09 1.2e-06 28.6 3.3 1 23 255 277 255 277 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF543-201 - 600 9.1e-71 230.6 97.4 4 13 1.7e-06 0.0013 19.1 5.6 1 23 283 305 283 305 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF543-201 - 600 9.1e-71 230.6 97.4 5 13 2e-06 0.0015 18.8 0.2 1 23 311 333 311 333 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF543-201 - 600 9.1e-71 230.6 97.4 6 13 8.8e-07 0.00069 19.9 0.2 1 23 339 361 339 361 0.95 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF543-201 - 600 9.1e-71 230.6 97.4 7 13 3.4e-06 0.0026 18.1 0.2 1 23 367 389 367 389 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF543-201 - 600 9.1e-71 230.6 97.4 8 13 3.8e-09 2.9e-06 27.4 3.1 1 23 395 417 395 417 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF543-201 - 600 9.1e-71 230.6 97.4 9 13 2.8e-06 0.0022 18.4 5.0 1 23 423 445 423 445 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF543-201 - 600 9.1e-71 230.6 97.4 10 13 1e-07 7.8e-05 22.9 0.2 1 23 451 473 451 473 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF543-201 - 600 9.1e-71 230.6 97.4 11 13 2e-09 1.6e-06 28.3 1.2 1 23 479 501 479 501 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF543-201 - 600 9.1e-71 230.6 97.4 12 13 1.7e-05 0.014 15.9 0.4 1 23 507 529 507 529 0.91 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF543-201 - 600 9.1e-71 230.6 97.4 13 13 3.1e-08 2.4e-05 24.5 1.1 1 23 535 557 535 557 0.98 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZNF543-201 - 600 1.2e-36 122.1 94.4 1 13 2.2e-05 0.017 15.9 0.3 1 23 199 221 199 222 0.87 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF543-201 - 600 1.2e-36 122.1 94.4 2 13 2.3e-06 0.0018 19.0 1.0 1 23 227 249 227 250 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF543-201 - 600 1.2e-36 122.1 94.4 3 13 3.4e-05 0.027 15.3 2.1 1 23 255 277 255 278 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF543-201 - 600 1.2e-36 122.1 94.4 4 13 0.0049 3.8 8.6 4.3 1 23 283 305 283 306 0.83 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF543-201 - 600 1.2e-36 122.1 94.4 5 13 9.4e-05 0.073 13.9 0.2 1 23 311 333 311 334 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF543-201 - 600 1.2e-36 122.1 94.4 6 13 0.0084 6.5 7.9 0.3 1 23 339 361 339 362 0.80 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF543-201 - 600 1.2e-36 122.1 94.4 7 13 0.00012 0.097 13.6 0.3 1 23 367 389 367 390 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF543-201 - 600 1.2e-36 122.1 94.4 8 13 3.6e-05 0.028 15.2 2.1 1 23 395 417 395 418 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF543-201 - 600 1.2e-36 122.1 94.4 9 13 0.0029 2.3 9.3 4.5 1 23 423 445 423 446 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF543-201 - 600 1.2e-36 122.1 94.4 10 13 4.9e-06 0.0038 17.9 0.2 1 23 451 473 451 474 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF543-201 - 600 1.2e-36 122.1 94.4 11 13 5.5e-05 0.043 14.7 1.0 1 23 479 501 479 502 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF543-201 - 600 1.2e-36 122.1 94.4 12 13 8e-05 0.062 14.2 0.5 1 23 507 529 507 530 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF543-201 - 600 1.2e-36 122.1 94.4 13 13 3.7e-05 0.029 15.2 0.9 1 23 535 557 535 558 0.94 C2H2-type zinc finger KRAB PF01352.27 42 ZNF543-201 - 600 3.9e-23 80.8 0.3 1 1 8.4e-26 6.5e-23 80.1 0.3 1 42 8 49 8 49 0.99 KRAB box zf-C2H2_jaz PF12171.8 27 ZNF543-201 - 600 8.6e-16 57.8 63.0 1 13 3.5e-05 0.027 14.7 0.3 2 22 199 219 198 219 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF543-201 - 600 8.6e-16 57.8 63.0 2 13 0.0001 0.08 13.3 0.1 2 21 227 246 226 247 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF543-201 - 600 8.6e-16 57.8 63.0 3 13 0.0061 4.8 7.6 0.1 2 22 255 275 254 275 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF543-201 - 600 8.6e-16 57.8 63.0 4 13 0.025 20 5.6 1.0 2 23 283 304 282 305 0.90 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF543-201 - 600 8.6e-16 57.8 63.0 5 13 0.12 91 3.5 0.1 2 13 311 322 310 330 0.86 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF543-201 - 600 8.6e-16 57.8 63.0 6 13 0.021 16 5.9 0.1 2 15 339 352 338 358 0.84 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF543-201 - 600 8.6e-16 57.8 63.0 7 13 0.2 1.5e+02 2.8 0.7 2 21 367 386 366 387 0.88 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF543-201 - 600 8.6e-16 57.8 63.0 8 13 0.00073 0.57 10.5 0.4 2 22 395 415 394 415 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF543-201 - 600 8.6e-16 57.8 63.0 9 13 0.1 80 3.7 1.6 2 24 423 445 422 445 0.91 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF543-201 - 600 8.6e-16 57.8 63.0 10 13 0.00043 0.34 11.3 0.0 2 22 451 471 450 471 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF543-201 - 600 8.6e-16 57.8 63.0 11 13 0.00035 0.27 11.6 0.1 2 21 479 498 478 499 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF543-201 - 600 8.6e-16 57.8 63.0 12 13 0.5 3.9e+02 1.5 0.4 2 11 507 516 506 525 0.74 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF543-201 - 600 8.6e-16 57.8 63.0 13 13 0.041 32 5.0 0.0 2 21 535 554 534 555 0.84 Zinc-finger double-stranded RNA-binding XPA_N PF01286.18 32 ZNF543-201 - 600 5.4e-15 55.1 57.5 1 13 0.012 9.4 6.4 0.1 3 13 200 210 199 216 0.83 XPA protein N-terminal XPA_N PF01286.18 32 ZNF543-201 - 600 5.4e-15 55.1 57.5 2 13 0.0027 2.1 8.4 0.1 3 14 228 239 226 245 0.88 XPA protein N-terminal XPA_N PF01286.18 32 ZNF543-201 - 600 5.4e-15 55.1 57.5 3 13 0.0083 6.5 6.9 0.1 3 12 256 265 254 271 0.90 XPA protein N-terminal XPA_N PF01286.18 32 ZNF543-201 - 600 5.4e-15 55.1 57.5 4 13 0.019 15 5.7 0.2 3 12 284 293 282 294 0.89 XPA protein N-terminal XPA_N PF01286.18 32 ZNF543-201 - 600 5.4e-15 55.1 57.5 5 13 0.01 8 6.6 0.3 3 13 312 322 310 322 0.90 XPA protein N-terminal XPA_N PF01286.18 32 ZNF543-201 - 600 5.4e-15 55.1 57.5 6 13 0.0051 4 7.6 0.0 3 16 340 354 338 357 0.78 XPA protein N-terminal XPA_N PF01286.18 32 ZNF543-201 - 600 5.4e-15 55.1 57.5 7 13 0.0036 2.8 8.1 1.1 3 14 368 379 366 385 0.93 XPA protein N-terminal XPA_N PF01286.18 32 ZNF543-201 - 600 5.4e-15 55.1 57.5 8 13 0.0086 6.7 6.8 0.1 3 12 396 405 394 410 0.90 XPA protein N-terminal XPA_N PF01286.18 32 ZNF543-201 - 600 5.4e-15 55.1 57.5 9 13 0.049 38 4.4 1.2 3 12 424 433 422 435 0.89 XPA protein N-terminal XPA_N PF01286.18 32 ZNF543-201 - 600 5.4e-15 55.1 57.5 10 13 0.0026 2 8.5 0.1 3 13 452 462 450 472 0.86 XPA protein N-terminal XPA_N PF01286.18 32 ZNF543-201 - 600 5.4e-15 55.1 57.5 11 13 0.0043 3.3 7.8 0.0 3 14 480 491 478 497 0.86 XPA protein N-terminal XPA_N PF01286.18 32 ZNF543-201 - 600 5.4e-15 55.1 57.5 12 13 0.012 9.7 6.3 0.5 3 14 508 519 506 520 0.91 XPA protein N-terminal XPA_N PF01286.18 32 ZNF543-201 - 600 5.4e-15 55.1 57.5 13 13 0.027 21 5.2 0.1 3 12 536 545 534 548 0.89 XPA protein N-terminal zf-C2H2_6 PF13912.6 27 ZNF543-201 - 600 6.1e-13 48.4 100.6 1 14 0.0028 2.2 8.4 1.9 2 12 199 209 198 210 0.91 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF543-201 - 600 6.1e-13 48.4 100.6 2 14 7.9e-05 0.062 13.3 1.1 2 20 227 245 227 250 0.79 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF543-201 - 600 6.1e-13 48.4 100.6 3 14 0.0098 7.6 6.7 0.6 2 13 255 266 255 279 0.81 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF543-201 - 600 6.1e-13 48.4 100.6 4 14 0.0023 1.8 8.7 0.9 2 11 283 292 283 293 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF543-201 - 600 6.1e-13 48.4 100.6 5 14 0.0046 3.6 7.7 0.9 2 12 311 321 311 321 0.92 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF543-201 - 600 6.1e-13 48.4 100.6 6 14 0.0076 6 7.0 0.2 2 20 339 357 339 361 0.81 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF543-201 - 600 6.1e-13 48.4 100.6 7 14 0.044 34 4.6 3.6 2 11 367 376 367 377 0.96 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF543-201 - 600 6.1e-13 48.4 100.6 8 14 0.026 20 5.3 2.9 2 25 395 414 395 416 0.81 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF543-201 - 600 6.1e-13 48.4 100.6 9 14 0.0015 1.2 9.2 1.0 2 11 423 432 423 434 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF543-201 - 600 6.1e-13 48.4 100.6 10 14 9.5 7.4e+03 -2.9 0.5 20 24 441 445 441 447 0.91 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF543-201 - 600 6.1e-13 48.4 100.6 11 14 0.00051 0.39 10.8 0.1 2 12 451 461 451 469 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF543-201 - 600 6.1e-13 48.4 100.6 12 14 0.011 8.8 6.5 0.4 2 13 479 490 479 499 0.89 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF543-201 - 600 6.1e-13 48.4 100.6 13 14 0.037 29 4.8 0.4 2 21 507 526 507 531 0.80 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF543-201 - 600 6.1e-13 48.4 100.6 14 14 3.6e-06 0.0028 17.6 1.6 2 24 535 557 535 559 0.91 C2H2-type zinc finger Zn-ribbon_8 PF09723.10 40 ZNF543-201 - 600 2.5e-12 46.7 77.1 1 13 0.0017 1.4 9.1 1.8 6 34 179 206 178 211 0.52 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF543-201 - 600 2.5e-12 46.7 77.1 2 13 0.0003 0.23 11.6 6.6 6 37 199 237 197 238 0.80 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF543-201 - 600 2.5e-12 46.7 77.1 3 13 7e-05 0.054 13.6 3.9 6 38 227 266 224 268 0.81 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF543-201 - 600 2.5e-12 46.7 77.1 4 13 4.7e-05 0.036 14.2 3.7 6 35 255 291 253 295 0.89 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF543-201 - 600 2.5e-12 46.7 77.1 5 13 1.4e-05 0.011 15.8 2.8 6 37 283 321 282 324 0.87 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF543-201 - 600 2.5e-12 46.7 77.1 6 13 0.0033 2.5 8.3 3.2 6 38 311 350 310 352 0.82 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF543-201 - 600 2.5e-12 46.7 77.1 7 13 0.1 79 3.5 6.4 6 34 339 374 338 377 0.80 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF543-201 - 600 2.5e-12 46.7 77.1 8 13 0.054 42 4.4 7.1 6 38 367 406 365 407 0.76 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF543-201 - 600 2.5e-12 46.7 77.1 9 13 0.00014 0.11 12.6 4.8 6 35 395 431 394 434 0.91 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF543-201 - 600 2.5e-12 46.7 77.1 10 13 0.00036 0.28 11.3 7.9 6 35 423 459 422 464 0.92 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF543-201 - 600 2.5e-12 46.7 77.1 11 13 0.00017 0.13 12.4 4.5 6 38 451 490 450 492 0.83 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF543-201 - 600 2.5e-12 46.7 77.1 12 13 0.00066 0.52 10.5 4.2 6 35 479 515 478 519 0.90 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF543-201 - 600 2.5e-12 46.7 77.1 13 13 0.0081 6.3 7.0 0.4 6 17 535 546 534 561 0.82 Zinc ribbon domain zf-C2H2_11 PF16622.5 29 ZNF543-201 - 600 7.2e-08 32.1 62.9 1 13 0.0068 5.3 6.9 0.0 2 23 196 217 195 221 0.74 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF543-201 - 600 7.2e-08 32.1 62.9 2 13 0.0012 0.9 9.4 0.4 6 26 228 248 226 249 0.93 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF543-201 - 600 7.2e-08 32.1 62.9 3 13 0.0014 1.1 9.1 0.5 5 26 255 276 252 277 0.93 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF543-201 - 600 7.2e-08 32.1 62.9 4 13 0.038 30 4.5 0.2 5 15 283 293 280 298 0.90 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF543-201 - 600 7.2e-08 32.1 62.9 5 13 0.56 4.3e+02 0.8 0.1 7 26 313 332 311 333 0.76 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF543-201 - 600 7.2e-08 32.1 62.9 6 13 0.35 2.8e+02 1.4 0.1 6 15 340 349 338 361 0.72 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF543-201 - 600 7.2e-08 32.1 62.9 7 13 0.19 1.4e+02 2.3 0.1 7 26 369 388 366 389 0.82 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF543-201 - 600 7.2e-08 32.1 62.9 8 13 0.0052 4.1 7.3 0.5 5 26 395 416 392 417 0.92 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF543-201 - 600 7.2e-08 32.1 62.9 9 13 0.28 2.2e+02 1.7 0.7 6 15 424 433 421 441 0.90 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF543-201 - 600 7.2e-08 32.1 62.9 10 13 0.0064 5 7.0 0.0 6 26 452 472 449 473 0.91 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF543-201 - 600 7.2e-08 32.1 62.9 11 13 0.0026 2 8.2 0.3 6 26 480 500 477 501 0.93 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF543-201 - 600 7.2e-08 32.1 62.9 12 13 0.0095 7.4 6.4 1.1 6 26 508 528 505 529 0.91 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF543-201 - 600 7.2e-08 32.1 62.9 13 13 0.025 19 5.1 0.4 6 26 536 556 533 557 0.92 zinc-finger C2H2-type # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF543-201.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF543-201.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF543-201.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF543-201.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF543-201.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:08:28 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZNF544-201 - 715 7.5e-112 361.2 95.4 1 16 0.0011 1.1 9.8 0.6 8 23 291 306 277 308 0.86 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF544-201 - 715 7.5e-112 361.2 95.4 2 16 0.18 1.8e+02 2.8 0.1 10 20 321 332 317 335 0.82 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF544-201 - 715 7.5e-112 361.2 95.4 3 16 0.037 37 5.0 0.5 10 25 349 364 346 365 0.85 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF544-201 - 715 7.5e-112 361.2 95.4 4 16 2.6e-10 2.5e-07 30.8 1.1 5 25 370 390 369 391 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF544-201 - 715 7.5e-112 361.2 95.4 5 16 2.5e-12 2.5e-09 37.1 0.1 2 25 395 418 394 419 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF544-201 - 715 7.5e-112 361.2 95.4 6 16 1.4e-10 1.4e-07 31.6 0.7 3 24 424 445 422 446 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF544-201 - 715 7.5e-112 361.2 95.4 7 16 3.8e-11 3.7e-08 33.4 0.6 1 25 450 474 450 475 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF544-201 - 715 7.5e-112 361.2 95.4 8 16 5.2e-11 5.2e-08 33.0 1.5 2 25 479 502 478 503 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF544-201 - 715 7.5e-112 361.2 95.4 9 16 5.5e-12 5.5e-09 36.1 0.2 1 25 506 530 506 531 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF544-201 - 715 7.5e-112 361.2 95.4 10 16 1.2e-10 1.2e-07 31.8 0.4 3 24 536 557 534 558 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF544-201 - 715 7.5e-112 361.2 95.4 11 16 2.9e-10 2.9e-07 30.6 0.4 1 25 562 586 562 587 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF544-201 - 715 7.5e-112 361.2 95.4 12 16 7.1e-12 7.1e-09 35.7 0.5 2 25 591 614 590 615 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF544-201 - 715 7.5e-112 361.2 95.4 13 16 2.8e-11 2.8e-08 33.8 0.2 2 25 619 642 618 643 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF544-201 - 715 7.5e-112 361.2 95.4 14 16 8.7e-12 8.7e-09 35.4 0.4 2 25 647 670 646 670 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF544-201 - 715 7.5e-112 361.2 95.4 15 16 1e-09 1e-06 28.9 0.7 1 25 674 698 674 699 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF544-201 - 715 7.5e-112 361.2 95.4 16 16 0.0023 2.3 8.8 0.3 2 14 703 715 702 715 0.92 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZNF544-201 - 715 1.7e-70 229.7 118.0 1 15 4.9 4.9e+03 -1.6 0.7 3 16 213 228 212 230 0.76 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF544-201 - 715 1.7e-70 229.7 118.0 2 15 1.6 1.6e+03 -0.1 1.7 1 11 298 308 298 314 0.84 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF544-201 - 715 1.7e-70 229.7 118.0 3 15 0.69 6.9e+02 1.0 6.5 2 11 355 364 354 374 0.79 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF544-201 - 715 1.7e-70 229.7 118.0 4 15 1.7e-09 1.7e-06 28.2 0.8 1 23 380 402 380 402 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF544-201 - 715 1.7e-70 229.7 118.0 5 15 7.3e-09 7.3e-06 26.2 0.7 1 23 408 430 408 430 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF544-201 - 715 1.7e-70 229.7 118.0 6 15 2.1e-05 0.021 15.3 0.4 1 23 436 458 436 458 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF544-201 - 715 1.7e-70 229.7 118.0 7 15 7.8e-09 7.7e-06 26.1 3.4 1 23 464 486 464 486 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF544-201 - 715 1.7e-70 229.7 118.0 8 15 4.7e-10 4.6e-07 29.9 1.7 1 23 492 514 492 514 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF544-201 - 715 1.7e-70 229.7 118.0 9 15 4.4e-09 4.4e-06 26.8 0.7 1 23 520 542 520 542 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF544-201 - 715 1.7e-70 229.7 118.0 10 15 3.9e-06 0.0038 17.6 0.2 1 23 548 570 548 570 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF544-201 - 715 1.7e-70 229.7 118.0 11 15 9e-09 9e-06 25.9 2.9 1 23 576 598 576 598 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF544-201 - 715 1.7e-70 229.7 118.0 12 15 9.6e-09 9.5e-06 25.8 0.2 1 23 604 626 604 626 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF544-201 - 715 1.7e-70 229.7 118.0 13 15 1.3e-08 1.2e-05 25.4 1.6 1 23 632 654 632 654 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF544-201 - 715 1.7e-70 229.7 118.0 14 15 1.1e-07 0.00011 22.4 1.0 1 23 660 682 660 682 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF544-201 - 715 1.7e-70 229.7 118.0 15 15 1.3e-10 1.3e-07 31.7 0.9 1 23 688 710 688 710 0.99 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZNF544-201 - 715 1.1e-43 144.1 110.7 1 14 1.6 1.6e+03 0.4 2.2 1 13 298 310 298 315 0.77 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF544-201 - 715 1.1e-43 144.1 110.7 2 14 0.0039 3.9 8.6 5.2 2 23 355 374 354 375 0.85 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF544-201 - 715 1.1e-43 144.1 110.7 3 14 7.4e-07 0.00074 20.1 0.7 1 23 380 402 380 403 0.97 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF544-201 - 715 1.1e-43 144.1 110.7 4 14 4.1e-06 0.0041 17.8 0.5 1 23 408 430 408 431 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF544-201 - 715 1.1e-43 144.1 110.7 5 14 0.0024 2.4 9.3 0.5 1 23 436 458 436 459 0.91 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF544-201 - 715 1.1e-43 144.1 110.7 6 14 4e-07 0.0004 21.0 2.7 1 23 464 486 464 487 0.97 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF544-201 - 715 1.1e-43 144.1 110.7 7 14 1.6e-07 0.00016 22.3 1.5 1 23 492 514 492 515 0.97 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF544-201 - 715 1.1e-43 144.1 110.7 8 14 3.2e-06 0.0032 18.2 0.6 1 23 520 542 520 543 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF544-201 - 715 1.1e-43 144.1 110.7 9 14 0.0018 1.8 9.6 0.2 1 23 548 570 548 571 0.89 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF544-201 - 715 1.1e-43 144.1 110.7 10 14 1.9e-06 0.0019 18.9 2.1 3 23 578 598 576 599 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF544-201 - 715 1.1e-43 144.1 110.7 11 14 5.4e-06 0.0054 17.5 0.2 1 23 604 626 604 627 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF544-201 - 715 1.1e-43 144.1 110.7 12 14 5.8e-05 0.058 14.3 1.2 1 23 632 654 632 655 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF544-201 - 715 1.1e-43 144.1 110.7 13 14 8.6e-06 0.0085 16.8 1.2 1 23 660 682 660 683 0.90 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF544-201 - 715 1.1e-43 144.1 110.7 14 14 2.5e-06 0.0024 18.5 0.8 1 23 688 710 688 711 0.96 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF544-201 - 715 1.3e-24 85.6 96.8 1 14 0.15 1.5e+02 2.5 0.7 2 8 298 304 297 306 0.85 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF544-201 - 715 1.3e-24 85.6 96.8 2 14 0.012 12 6.0 1.0 4 12 356 364 355 364 0.90 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF544-201 - 715 1.3e-24 85.6 96.8 3 14 1.4e-05 0.014 15.4 0.8 2 24 380 402 380 405 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF544-201 - 715 1.3e-24 85.6 96.8 4 14 0.00021 0.21 11.6 0.3 2 20 408 426 408 432 0.79 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF544-201 - 715 1.3e-24 85.6 96.8 5 14 0.13 1.3e+02 2.8 0.1 2 12 436 446 436 458 0.85 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF544-201 - 715 1.3e-24 85.6 96.8 6 14 1.6e-06 0.0016 18.4 3.8 2 24 464 486 464 489 0.96 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF544-201 - 715 1.3e-24 85.6 96.8 7 14 4.5e-05 0.045 13.8 1.6 2 24 492 514 492 517 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF544-201 - 715 1.3e-24 85.6 96.8 8 14 0.00031 0.31 11.1 0.7 2 22 520 540 520 544 0.83 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF544-201 - 715 1.3e-24 85.6 96.8 9 14 0.018 18 5.5 0.1 2 12 548 558 548 559 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF544-201 - 715 1.3e-24 85.6 96.8 10 14 0.00013 0.13 12.3 3.0 2 24 576 598 576 601 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF544-201 - 715 1.3e-24 85.6 96.8 11 14 9e-05 0.09 12.8 0.2 2 21 604 623 604 627 0.89 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF544-201 - 715 1.3e-24 85.6 96.8 12 14 0.00063 0.62 10.1 1.0 2 24 632 654 632 657 0.88 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF544-201 - 715 1.3e-24 85.6 96.8 13 14 0.0013 1.3 9.2 0.6 2 12 660 670 660 683 0.87 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF544-201 - 715 1.3e-24 85.6 96.8 14 14 3.5e-05 0.035 14.1 0.8 2 24 688 710 688 713 0.95 C2H2-type zinc finger KRAB PF01352.27 42 ZNF544-201 - 715 1.3e-20 72.8 0.7 1 1 2.5e-23 2.5e-20 71.8 0.7 1 42 13 54 13 54 0.98 KRAB box zf-C2H2_jaz PF12171.8 27 ZNF544-201 - 715 7.8e-14 51.5 73.6 1 14 6.5 6.5e+03 -2.4 0.2 14 22 197 205 192 206 0.79 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF544-201 - 715 7.8e-14 51.5 73.6 2 14 1.2 1.2e+03 -0.0 0.8 1 11 297 307 297 310 0.83 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF544-201 - 715 7.8e-14 51.5 73.6 3 14 0.0023 2.3 8.6 0.3 2 24 380 402 379 402 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF544-201 - 715 7.8e-14 51.5 73.6 4 14 0.015 15 6.0 0.1 2 21 408 427 407 428 0.84 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF544-201 - 715 7.8e-14 51.5 73.6 5 14 0.059 59 4.1 0.2 4 20 438 454 435 456 0.75 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF544-201 - 715 7.8e-14 51.5 73.6 6 14 0.0001 0.1 12.9 0.9 2 24 464 486 463 486 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF544-201 - 715 7.8e-14 51.5 73.6 7 14 0.0025 2.5 8.5 0.6 2 24 492 514 491 514 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF544-201 - 715 7.8e-14 51.5 73.6 8 14 0.0061 6.1 7.3 0.1 2 22 520 540 519 540 0.91 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF544-201 - 715 7.8e-14 51.5 73.6 9 14 0.14 1.4e+02 2.9 0.1 4 20 550 566 547 568 0.73 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF544-201 - 715 7.8e-14 51.5 73.6 10 14 5.1e-05 0.051 13.9 0.8 2 24 576 598 575 598 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF544-201 - 715 7.8e-14 51.5 73.6 11 14 0.0009 0.9 9.9 0.1 2 21 604 623 603 624 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF544-201 - 715 7.8e-14 51.5 73.6 12 14 0.0017 1.7 9.0 0.8 2 24 632 654 631 654 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF544-201 - 715 7.8e-14 51.5 73.6 13 14 0.01 10 6.6 0.1 2 20 660 678 659 679 0.95 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF544-201 - 715 7.8e-14 51.5 73.6 14 14 0.0013 1.3 9.4 0.1 2 24 688 710 687 710 0.93 Zinc-finger double-stranded RNA-binding Zn-ribbon_8 PF09723.10 40 ZNF544-201 - 715 1.2e-09 38.1 73.9 1 14 1.6 1.6e+03 -0.7 2.8 5 14 297 306 297 318 0.84 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF544-201 - 715 1.2e-09 38.1 73.9 2 14 2.2 2.2e+03 -1.2 5.0 28 34 355 361 326 369 0.60 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF544-201 - 715 1.2e-09 38.1 73.9 3 14 0.066 66 3.7 8.1 8 34 356 387 354 391 0.85 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF544-201 - 715 1.2e-09 38.1 73.9 4 14 0.0009 0.89 9.7 4.0 6 36 380 417 379 421 0.83 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF544-201 - 715 1.2e-09 38.1 73.9 5 14 0.00092 0.92 9.7 2.5 6 34 408 443 407 446 0.87 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF544-201 - 715 1.2e-09 38.1 73.9 6 14 0.00025 0.25 11.5 1.7 6 35 436 472 435 477 0.91 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF544-201 - 715 1.2e-09 38.1 73.9 7 14 0.0013 1.3 9.2 4.6 6 35 464 500 463 504 0.82 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF544-201 - 715 1.2e-09 38.1 73.9 8 14 0.00034 0.34 11.1 3.0 6 34 492 527 491 531 0.89 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF544-201 - 715 1.2e-09 38.1 73.9 9 14 5.5e-05 0.055 13.6 1.0 6 35 520 556 519 559 0.90 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF544-201 - 715 1.2e-09 38.1 73.9 10 14 1.9e-05 0.019 15.1 0.4 6 35 548 584 547 589 0.90 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF544-201 - 715 1.2e-09 38.1 73.9 11 14 4.3e-05 0.043 13.9 2.3 6 38 604 643 603 645 0.88 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF544-201 - 715 1.2e-09 38.1 73.9 12 14 0.0011 1.1 9.4 3.0 6 34 632 667 631 670 0.85 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF544-201 - 715 1.2e-09 38.1 73.9 13 14 0.00024 0.24 11.6 2.9 6 38 660 699 659 701 0.87 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF544-201 - 715 1.2e-09 38.1 73.9 14 14 0.0085 8.4 6.6 0.5 6 16 688 698 687 706 0.86 Zinc ribbon domain # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF544-201.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF544-201.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF544-201.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF544-201.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF544-201.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:08:28 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF544-202.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF544-202.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF544-202.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF544-202.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF544-202.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:08:28 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- KRAB PF01352.27 42 ZNF544-203 - 75 4.3e-22 77.5 0.7 1 1 2.9e-26 5.3e-22 77.2 0.7 1 42 13 54 13 54 0.98 KRAB box # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF544-203.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF544-203.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF544-203.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF544-203.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF544-203.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:08:29 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- KRAB PF01352.27 42 ZNF544-204 - 139 1.1e-21 76.1 0.7 1 1 2.4e-25 2.2e-21 75.2 0.7 1 42 13 54 13 54 0.98 KRAB box # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF544-204.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF544-204.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF544-204.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF544-204.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF544-204.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:08:29 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- KRAB PF01352.27 42 ZNF544-205 - 50 1.3e-16 59.9 0.5 1 1 8.3e-21 1.5e-16 59.8 0.5 9 42 1 34 1 34 0.97 KRAB box # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF544-205.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF544-205.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF544-205.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF544-205.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF544-205.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:08:29 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZNF544-206 - 715 7.5e-112 361.2 95.4 1 16 0.0011 1.1 9.8 0.6 8 23 291 306 277 308 0.86 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF544-206 - 715 7.5e-112 361.2 95.4 2 16 0.18 1.8e+02 2.8 0.1 10 20 321 332 317 335 0.82 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF544-206 - 715 7.5e-112 361.2 95.4 3 16 0.037 37 5.0 0.5 10 25 349 364 346 365 0.85 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF544-206 - 715 7.5e-112 361.2 95.4 4 16 2.6e-10 2.5e-07 30.8 1.1 5 25 370 390 369 391 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF544-206 - 715 7.5e-112 361.2 95.4 5 16 2.5e-12 2.5e-09 37.1 0.1 2 25 395 418 394 419 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF544-206 - 715 7.5e-112 361.2 95.4 6 16 1.4e-10 1.4e-07 31.6 0.7 3 24 424 445 422 446 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF544-206 - 715 7.5e-112 361.2 95.4 7 16 3.8e-11 3.7e-08 33.4 0.6 1 25 450 474 450 475 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF544-206 - 715 7.5e-112 361.2 95.4 8 16 5.2e-11 5.2e-08 33.0 1.5 2 25 479 502 478 503 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF544-206 - 715 7.5e-112 361.2 95.4 9 16 5.5e-12 5.5e-09 36.1 0.2 1 25 506 530 506 531 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF544-206 - 715 7.5e-112 361.2 95.4 10 16 1.2e-10 1.2e-07 31.8 0.4 3 24 536 557 534 558 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF544-206 - 715 7.5e-112 361.2 95.4 11 16 2.9e-10 2.9e-07 30.6 0.4 1 25 562 586 562 587 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF544-206 - 715 7.5e-112 361.2 95.4 12 16 7.1e-12 7.1e-09 35.7 0.5 2 25 591 614 590 615 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF544-206 - 715 7.5e-112 361.2 95.4 13 16 2.8e-11 2.8e-08 33.8 0.2 2 25 619 642 618 643 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF544-206 - 715 7.5e-112 361.2 95.4 14 16 8.7e-12 8.7e-09 35.4 0.4 2 25 647 670 646 670 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF544-206 - 715 7.5e-112 361.2 95.4 15 16 1e-09 1e-06 28.9 0.7 1 25 674 698 674 699 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF544-206 - 715 7.5e-112 361.2 95.4 16 16 0.0023 2.3 8.8 0.3 2 14 703 715 702 715 0.92 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZNF544-206 - 715 1.7e-70 229.7 118.0 1 15 4.9 4.9e+03 -1.6 0.7 3 16 213 228 212 230 0.76 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF544-206 - 715 1.7e-70 229.7 118.0 2 15 1.6 1.6e+03 -0.1 1.7 1 11 298 308 298 314 0.84 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF544-206 - 715 1.7e-70 229.7 118.0 3 15 0.69 6.9e+02 1.0 6.5 2 11 355 364 354 374 0.79 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF544-206 - 715 1.7e-70 229.7 118.0 4 15 1.7e-09 1.7e-06 28.2 0.8 1 23 380 402 380 402 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF544-206 - 715 1.7e-70 229.7 118.0 5 15 7.3e-09 7.3e-06 26.2 0.7 1 23 408 430 408 430 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF544-206 - 715 1.7e-70 229.7 118.0 6 15 2.1e-05 0.021 15.3 0.4 1 23 436 458 436 458 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF544-206 - 715 1.7e-70 229.7 118.0 7 15 7.8e-09 7.7e-06 26.1 3.4 1 23 464 486 464 486 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF544-206 - 715 1.7e-70 229.7 118.0 8 15 4.7e-10 4.6e-07 29.9 1.7 1 23 492 514 492 514 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF544-206 - 715 1.7e-70 229.7 118.0 9 15 4.4e-09 4.4e-06 26.8 0.7 1 23 520 542 520 542 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF544-206 - 715 1.7e-70 229.7 118.0 10 15 3.9e-06 0.0038 17.6 0.2 1 23 548 570 548 570 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF544-206 - 715 1.7e-70 229.7 118.0 11 15 9e-09 9e-06 25.9 2.9 1 23 576 598 576 598 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF544-206 - 715 1.7e-70 229.7 118.0 12 15 9.6e-09 9.5e-06 25.8 0.2 1 23 604 626 604 626 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF544-206 - 715 1.7e-70 229.7 118.0 13 15 1.3e-08 1.2e-05 25.4 1.6 1 23 632 654 632 654 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF544-206 - 715 1.7e-70 229.7 118.0 14 15 1.1e-07 0.00011 22.4 1.0 1 23 660 682 660 682 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF544-206 - 715 1.7e-70 229.7 118.0 15 15 1.3e-10 1.3e-07 31.7 0.9 1 23 688 710 688 710 0.99 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZNF544-206 - 715 1.1e-43 144.1 110.7 1 14 1.6 1.6e+03 0.4 2.2 1 13 298 310 298 315 0.77 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF544-206 - 715 1.1e-43 144.1 110.7 2 14 0.0039 3.9 8.6 5.2 2 23 355 374 354 375 0.85 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF544-206 - 715 1.1e-43 144.1 110.7 3 14 7.4e-07 0.00074 20.1 0.7 1 23 380 402 380 403 0.97 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF544-206 - 715 1.1e-43 144.1 110.7 4 14 4.1e-06 0.0041 17.8 0.5 1 23 408 430 408 431 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF544-206 - 715 1.1e-43 144.1 110.7 5 14 0.0024 2.4 9.3 0.5 1 23 436 458 436 459 0.91 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF544-206 - 715 1.1e-43 144.1 110.7 6 14 4e-07 0.0004 21.0 2.7 1 23 464 486 464 487 0.97 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF544-206 - 715 1.1e-43 144.1 110.7 7 14 1.6e-07 0.00016 22.3 1.5 1 23 492 514 492 515 0.97 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF544-206 - 715 1.1e-43 144.1 110.7 8 14 3.2e-06 0.0032 18.2 0.6 1 23 520 542 520 543 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF544-206 - 715 1.1e-43 144.1 110.7 9 14 0.0018 1.8 9.6 0.2 1 23 548 570 548 571 0.89 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF544-206 - 715 1.1e-43 144.1 110.7 10 14 1.9e-06 0.0019 18.9 2.1 3 23 578 598 576 599 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF544-206 - 715 1.1e-43 144.1 110.7 11 14 5.4e-06 0.0054 17.5 0.2 1 23 604 626 604 627 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF544-206 - 715 1.1e-43 144.1 110.7 12 14 5.8e-05 0.058 14.3 1.2 1 23 632 654 632 655 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF544-206 - 715 1.1e-43 144.1 110.7 13 14 8.6e-06 0.0085 16.8 1.2 1 23 660 682 660 683 0.90 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF544-206 - 715 1.1e-43 144.1 110.7 14 14 2.5e-06 0.0024 18.5 0.8 1 23 688 710 688 711 0.96 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF544-206 - 715 1.3e-24 85.6 96.8 1 14 0.15 1.5e+02 2.5 0.7 2 8 298 304 297 306 0.85 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF544-206 - 715 1.3e-24 85.6 96.8 2 14 0.012 12 6.0 1.0 4 12 356 364 355 364 0.90 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF544-206 - 715 1.3e-24 85.6 96.8 3 14 1.4e-05 0.014 15.4 0.8 2 24 380 402 380 405 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF544-206 - 715 1.3e-24 85.6 96.8 4 14 0.00021 0.21 11.6 0.3 2 20 408 426 408 432 0.79 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF544-206 - 715 1.3e-24 85.6 96.8 5 14 0.13 1.3e+02 2.8 0.1 2 12 436 446 436 458 0.85 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF544-206 - 715 1.3e-24 85.6 96.8 6 14 1.6e-06 0.0016 18.4 3.8 2 24 464 486 464 489 0.96 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF544-206 - 715 1.3e-24 85.6 96.8 7 14 4.5e-05 0.045 13.8 1.6 2 24 492 514 492 517 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF544-206 - 715 1.3e-24 85.6 96.8 8 14 0.00031 0.31 11.1 0.7 2 22 520 540 520 544 0.83 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF544-206 - 715 1.3e-24 85.6 96.8 9 14 0.018 18 5.5 0.1 2 12 548 558 548 559 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF544-206 - 715 1.3e-24 85.6 96.8 10 14 0.00013 0.13 12.3 3.0 2 24 576 598 576 601 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF544-206 - 715 1.3e-24 85.6 96.8 11 14 9e-05 0.09 12.8 0.2 2 21 604 623 604 627 0.89 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF544-206 - 715 1.3e-24 85.6 96.8 12 14 0.00063 0.62 10.1 1.0 2 24 632 654 632 657 0.88 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF544-206 - 715 1.3e-24 85.6 96.8 13 14 0.0013 1.3 9.2 0.6 2 12 660 670 660 683 0.87 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF544-206 - 715 1.3e-24 85.6 96.8 14 14 3.5e-05 0.035 14.1 0.8 2 24 688 710 688 713 0.95 C2H2-type zinc finger KRAB PF01352.27 42 ZNF544-206 - 715 1.3e-20 72.8 0.7 1 1 2.5e-23 2.5e-20 71.8 0.7 1 42 13 54 13 54 0.98 KRAB box zf-C2H2_jaz PF12171.8 27 ZNF544-206 - 715 7.8e-14 51.5 73.6 1 14 6.5 6.5e+03 -2.4 0.2 14 22 197 205 192 206 0.79 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF544-206 - 715 7.8e-14 51.5 73.6 2 14 1.2 1.2e+03 -0.0 0.8 1 11 297 307 297 310 0.83 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF544-206 - 715 7.8e-14 51.5 73.6 3 14 0.0023 2.3 8.6 0.3 2 24 380 402 379 402 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF544-206 - 715 7.8e-14 51.5 73.6 4 14 0.015 15 6.0 0.1 2 21 408 427 407 428 0.84 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF544-206 - 715 7.8e-14 51.5 73.6 5 14 0.059 59 4.1 0.2 4 20 438 454 435 456 0.75 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF544-206 - 715 7.8e-14 51.5 73.6 6 14 0.0001 0.1 12.9 0.9 2 24 464 486 463 486 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF544-206 - 715 7.8e-14 51.5 73.6 7 14 0.0025 2.5 8.5 0.6 2 24 492 514 491 514 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF544-206 - 715 7.8e-14 51.5 73.6 8 14 0.0061 6.1 7.3 0.1 2 22 520 540 519 540 0.91 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF544-206 - 715 7.8e-14 51.5 73.6 9 14 0.14 1.4e+02 2.9 0.1 4 20 550 566 547 568 0.73 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF544-206 - 715 7.8e-14 51.5 73.6 10 14 5.1e-05 0.051 13.9 0.8 2 24 576 598 575 598 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF544-206 - 715 7.8e-14 51.5 73.6 11 14 0.0009 0.9 9.9 0.1 2 21 604 623 603 624 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF544-206 - 715 7.8e-14 51.5 73.6 12 14 0.0017 1.7 9.0 0.8 2 24 632 654 631 654 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF544-206 - 715 7.8e-14 51.5 73.6 13 14 0.01 10 6.6 0.1 2 20 660 678 659 679 0.95 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF544-206 - 715 7.8e-14 51.5 73.6 14 14 0.0013 1.3 9.4 0.1 2 24 688 710 687 710 0.93 Zinc-finger double-stranded RNA-binding Zn-ribbon_8 PF09723.10 40 ZNF544-206 - 715 1.2e-09 38.1 73.9 1 14 1.6 1.6e+03 -0.7 2.8 5 14 297 306 297 318 0.84 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF544-206 - 715 1.2e-09 38.1 73.9 2 14 2.2 2.2e+03 -1.2 5.0 28 34 355 361 326 369 0.60 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF544-206 - 715 1.2e-09 38.1 73.9 3 14 0.066 66 3.7 8.1 8 34 356 387 354 391 0.85 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF544-206 - 715 1.2e-09 38.1 73.9 4 14 0.0009 0.89 9.7 4.0 6 36 380 417 379 421 0.83 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF544-206 - 715 1.2e-09 38.1 73.9 5 14 0.00092 0.92 9.7 2.5 6 34 408 443 407 446 0.87 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF544-206 - 715 1.2e-09 38.1 73.9 6 14 0.00025 0.25 11.5 1.7 6 35 436 472 435 477 0.91 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF544-206 - 715 1.2e-09 38.1 73.9 7 14 0.0013 1.3 9.2 4.6 6 35 464 500 463 504 0.82 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF544-206 - 715 1.2e-09 38.1 73.9 8 14 0.00034 0.34 11.1 3.0 6 34 492 527 491 531 0.89 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF544-206 - 715 1.2e-09 38.1 73.9 9 14 5.5e-05 0.055 13.6 1.0 6 35 520 556 519 559 0.90 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF544-206 - 715 1.2e-09 38.1 73.9 10 14 1.9e-05 0.019 15.1 0.4 6 35 548 584 547 589 0.90 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF544-206 - 715 1.2e-09 38.1 73.9 11 14 4.3e-05 0.043 13.9 2.3 6 38 604 643 603 645 0.88 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF544-206 - 715 1.2e-09 38.1 73.9 12 14 0.0011 1.1 9.4 3.0 6 34 632 667 631 670 0.85 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF544-206 - 715 1.2e-09 38.1 73.9 13 14 0.00024 0.24 11.6 2.9 6 38 660 699 659 701 0.87 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF544-206 - 715 1.2e-09 38.1 73.9 14 14 0.0085 8.4 6.6 0.5 6 16 688 698 687 706 0.86 Zinc ribbon domain # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF544-206.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF544-206.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF544-206.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF544-206.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF544-206.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:08:30 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZNF544-207 - 573 1.3e-113 366.8 95.4 1 16 0.001 0.84 10.2 0.6 8 23 149 164 135 166 0.86 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF544-207 - 573 1.3e-113 366.8 95.4 2 16 0.17 1.4e+02 3.1 0.1 10 20 179 190 175 193 0.82 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF544-207 - 573 1.3e-113 366.8 95.4 3 16 0.035 28 5.3 0.5 10 25 207 222 204 223 0.85 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF544-207 - 573 1.3e-113 366.8 95.4 4 16 2.4e-10 2e-07 31.1 1.1 5 25 228 248 227 249 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF544-207 - 573 1.3e-113 366.8 95.4 5 16 2.3e-12 1.9e-09 37.5 0.1 2 25 253 276 252 277 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF544-207 - 573 1.3e-113 366.8 95.4 6 16 1.3e-10 1.1e-07 32.0 0.7 3 24 282 303 280 304 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF544-207 - 573 1.3e-113 366.8 95.4 7 16 3.5e-11 2.9e-08 33.8 0.6 1 25 308 332 308 333 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF544-207 - 573 1.3e-113 366.8 95.4 8 16 4.9e-11 4e-08 33.3 1.5 2 25 337 360 336 361 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF544-207 - 573 1.3e-113 366.8 95.4 9 16 5.2e-12 4.2e-09 36.4 0.2 1 25 364 388 364 389 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF544-207 - 573 1.3e-113 366.8 95.4 10 16 1.2e-10 9.4e-08 32.2 0.4 3 24 394 415 392 416 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF544-207 - 573 1.3e-113 366.8 95.4 11 16 2.7e-10 2.2e-07 31.0 0.4 1 25 420 444 420 445 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF544-207 - 573 1.3e-113 366.8 95.4 12 16 6.7e-12 5.5e-09 36.1 0.5 2 25 449 472 448 473 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF544-207 - 573 1.3e-113 366.8 95.4 13 16 2.7e-11 2.2e-08 34.2 0.2 2 25 477 500 476 501 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF544-207 - 573 1.3e-113 366.8 95.4 14 16 8.2e-12 6.7e-09 35.8 0.4 2 25 505 528 504 528 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF544-207 - 573 1.3e-113 366.8 95.4 15 16 9.5e-10 7.8e-07 29.3 0.7 1 25 532 556 532 557 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF544-207 - 573 1.3e-113 366.8 95.4 16 16 0.0022 1.8 9.2 0.3 2 14 561 573 560 573 0.92 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZNF544-207 - 573 4.1e-71 231.7 120.9 1 15 4.7 3.8e+03 -1.3 0.7 3 16 71 86 70 88 0.76 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF544-207 - 573 4.1e-71 231.7 120.9 2 15 1.5 1.3e+03 0.2 1.7 1 11 156 166 156 172 0.84 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF544-207 - 573 4.1e-71 231.7 120.9 3 15 0.94 7.6e+02 0.9 7.0 2 11 213 222 212 232 0.79 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF544-207 - 573 4.1e-71 231.7 120.9 4 15 1.6e-09 1.3e-06 28.5 0.8 1 23 238 260 238 260 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF544-207 - 573 4.1e-71 231.7 120.9 5 15 6.9e-09 5.6e-06 26.5 0.7 1 23 266 288 266 288 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF544-207 - 573 4.1e-71 231.7 120.9 6 15 2e-05 0.016 15.6 0.4 1 23 294 316 294 316 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF544-207 - 573 4.1e-71 231.7 120.9 7 15 7.3e-09 6e-06 26.4 3.4 1 23 322 344 322 344 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF544-207 - 573 4.1e-71 231.7 120.9 8 15 4.4e-10 3.6e-07 30.3 1.7 1 23 350 372 350 372 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF544-207 - 573 4.1e-71 231.7 120.9 9 15 4.2e-09 3.4e-06 27.2 0.7 1 23 378 400 378 400 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF544-207 - 573 4.1e-71 231.7 120.9 10 15 3.6e-06 0.003 17.9 0.2 1 23 406 428 406 428 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF544-207 - 573 4.1e-71 231.7 120.9 11 15 8.5e-09 7e-06 26.2 2.9 1 23 434 456 434 456 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF544-207 - 573 4.1e-71 231.7 120.9 12 15 9e-09 7.4e-06 26.1 0.2 1 23 462 484 462 484 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF544-207 - 573 4.1e-71 231.7 120.9 13 15 1.2e-08 9.6e-06 25.8 1.6 1 23 490 512 490 512 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF544-207 - 573 4.1e-71 231.7 120.9 14 15 1.1e-07 8.8e-05 22.8 1.0 1 23 518 540 518 540 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF544-207 - 573 4.1e-71 231.7 120.9 15 15 1.2e-10 9.9e-08 32.0 0.9 1 23 546 568 546 568 0.99 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZNF544-207 - 573 9.8e-43 141.1 118.2 1 14 1.5 1.2e+03 0.8 2.2 1 13 156 168 156 173 0.77 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF544-207 - 573 9.8e-43 141.1 118.2 2 14 0.0037 3 8.9 5.2 2 23 213 232 212 233 0.85 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF544-207 - 573 9.8e-43 141.1 118.2 3 14 7e-07 0.00057 20.5 0.7 1 23 238 260 238 261 0.97 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF544-207 - 573 9.8e-43 141.1 118.2 4 14 3.9e-06 0.0031 18.2 0.5 1 23 266 288 266 289 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF544-207 - 573 9.8e-43 141.1 118.2 5 14 0.0022 1.8 9.6 0.5 1 23 294 316 294 317 0.91 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF544-207 - 573 9.8e-43 141.1 118.2 6 14 3.8e-07 0.00031 21.3 2.7 1 23 322 344 322 345 0.97 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF544-207 - 573 9.8e-43 141.1 118.2 7 14 1.5e-07 0.00012 22.6 1.5 1 23 350 372 350 373 0.97 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF544-207 - 573 9.8e-43 141.1 118.2 8 14 3e-06 0.0024 18.5 0.6 1 23 378 400 378 401 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF544-207 - 573 9.8e-43 141.1 118.2 9 14 0.0017 1.4 10.0 0.2 1 23 406 428 406 429 0.89 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF544-207 - 573 9.8e-43 141.1 118.2 10 14 1.7e-06 0.0014 19.3 2.1 3 23 436 456 434 457 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF544-207 - 573 9.8e-43 141.1 118.2 11 14 5.1e-06 0.0041 17.8 0.2 1 23 462 484 462 485 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF544-207 - 573 9.8e-43 141.1 118.2 12 14 5.5e-05 0.045 14.6 1.2 1 23 490 512 490 513 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF544-207 - 573 9.8e-43 141.1 118.2 13 14 8.1e-06 0.0066 17.2 1.2 1 23 518 540 518 541 0.90 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF544-207 - 573 9.8e-43 141.1 118.2 14 14 2.3e-06 0.0019 18.9 0.8 1 23 546 568 546 569 0.96 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF544-207 - 573 4.1e-26 90.4 96.8 1 14 0.14 1.2e+02 2.9 0.7 2 8 156 162 155 164 0.85 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF544-207 - 573 4.1e-26 90.4 96.8 2 14 0.012 9.6 6.3 1.0 4 12 214 222 213 222 0.90 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF544-207 - 573 4.1e-26 90.4 96.8 3 14 1.3e-05 0.011 15.8 0.8 2 24 238 260 238 263 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF544-207 - 573 4.1e-26 90.4 96.8 4 14 0.0002 0.16 12.0 0.3 2 20 266 284 266 290 0.79 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF544-207 - 573 4.1e-26 90.4 96.8 5 14 0.12 99 3.1 0.1 2 12 294 304 294 316 0.85 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF544-207 - 573 4.1e-26 90.4 96.8 6 14 1.5e-06 0.0012 18.8 3.8 2 24 322 344 322 347 0.96 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF544-207 - 573 4.1e-26 90.4 96.8 7 14 4.3e-05 0.035 14.1 1.6 2 24 350 372 350 375 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF544-207 - 573 4.1e-26 90.4 96.8 8 14 0.00029 0.24 11.4 0.7 2 22 378 398 378 402 0.83 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF544-207 - 573 4.1e-26 90.4 96.8 9 14 0.017 14 5.8 0.1 2 12 406 416 406 417 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF544-207 - 573 4.1e-26 90.4 96.8 10 14 0.00012 0.098 12.7 3.0 2 24 434 456 434 459 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF544-207 - 573 4.1e-26 90.4 96.8 11 14 8.6e-05 0.07 13.2 0.2 2 21 462 481 462 485 0.89 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF544-207 - 573 4.1e-26 90.4 96.8 12 14 0.00059 0.48 10.5 1.0 2 24 490 512 490 515 0.88 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF544-207 - 573 4.1e-26 90.4 96.8 13 14 0.0012 0.98 9.5 0.6 2 12 518 528 518 541 0.87 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF544-207 - 573 4.1e-26 90.4 96.8 14 14 3.3e-05 0.027 14.5 0.8 2 24 546 568 546 571 0.95 C2H2-type zinc finger zf-C2H2_jaz PF12171.8 27 ZNF544-207 - 573 2.3e-15 56.4 73.1 1 15 6.2 5.1e+03 -2.0 0.2 14 22 55 63 50 64 0.79 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF544-207 - 573 2.3e-15 56.4 73.1 2 15 1.1 9.3e+02 0.3 0.8 1 11 155 165 155 168 0.83 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF544-207 - 573 2.3e-15 56.4 73.1 3 15 9.6 7.8e+03 -2.7 0.2 4 12 214 222 213 222 0.86 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF544-207 - 573 2.3e-15 56.4 73.1 4 15 0.0022 1.8 9.0 0.3 2 24 238 260 237 260 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF544-207 - 573 2.3e-15 56.4 73.1 5 15 0.014 11 6.4 0.1 2 21 266 285 265 286 0.84 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF544-207 - 573 2.3e-15 56.4 73.1 6 15 0.056 46 4.5 0.2 4 20 296 312 293 314 0.75 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF544-207 - 573 2.3e-15 56.4 73.1 7 15 9.7e-05 0.079 13.3 0.9 2 24 322 344 321 344 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF544-207 - 573 2.3e-15 56.4 73.1 8 15 0.0023 1.9 8.9 0.6 2 24 350 372 349 372 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF544-207 - 573 2.3e-15 56.4 73.1 9 15 0.0058 4.7 7.6 0.1 2 22 378 398 377 398 0.91 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF544-207 - 573 2.3e-15 56.4 73.1 10 15 0.14 1.1e+02 3.2 0.1 4 20 408 424 405 426 0.73 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF544-207 - 573 2.3e-15 56.4 73.1 11 15 4.8e-05 0.039 14.2 0.8 2 24 434 456 433 456 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF544-207 - 573 2.3e-15 56.4 73.1 12 15 0.00085 0.7 10.3 0.1 2 21 462 481 461 482 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF544-207 - 573 2.3e-15 56.4 73.1 13 15 0.0016 1.3 9.4 0.8 2 24 490 512 489 512 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF544-207 - 573 2.3e-15 56.4 73.1 14 15 0.0095 7.8 6.9 0.1 2 20 518 536 517 537 0.95 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF544-207 - 573 2.3e-15 56.4 73.1 15 15 0.0012 0.98 9.8 0.1 2 24 546 568 545 568 0.93 Zinc-finger double-stranded RNA-binding Zn-ribbon_8 PF09723.10 40 ZNF544-207 - 573 2.2e-10 40.5 75.1 1 13 1.6 1.3e+03 -0.4 2.8 5 14 155 164 155 176 0.84 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF544-207 - 573 2.2e-10 40.5 75.1 2 13 1.9 1.6e+03 -0.7 13.1 8 35 214 246 184 250 0.91 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF544-207 - 573 2.2e-10 40.5 75.1 3 13 0.00092 0.75 10.0 4.1 6 36 238 275 237 279 0.83 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF544-207 - 573 2.2e-10 40.5 75.1 4 13 0.00082 0.67 10.1 2.4 6 34 266 301 264 304 0.88 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF544-207 - 573 2.2e-10 40.5 75.1 5 13 0.00019 0.15 12.2 1.4 6 35 294 330 293 335 0.91 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF544-207 - 573 2.2e-10 40.5 75.1 6 13 0.008 6.5 7.0 0.5 6 16 322 332 320 345 0.84 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF544-207 - 573 2.2e-10 40.5 75.1 7 13 0.00031 0.25 11.5 3.0 6 34 350 385 349 390 0.89 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF544-207 - 573 2.2e-10 40.5 75.1 8 13 0.0001 0.084 13.0 1.9 6 35 378 414 377 416 0.90 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF544-207 - 573 2.2e-10 40.5 75.1 9 13 2e-05 0.016 15.3 0.6 6 35 406 442 404 447 0.91 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF544-207 - 573 2.2e-10 40.5 75.1 10 13 3.9e-05 0.032 14.4 2.3 6 38 462 501 461 503 0.88 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF544-207 - 573 2.2e-10 40.5 75.1 11 13 0.0014 1.1 9.4 3.2 6 34 490 525 489 527 0.86 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF544-207 - 573 2.2e-10 40.5 75.1 12 13 0.00026 0.21 11.7 3.1 6 38 518 557 517 559 0.87 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF544-207 - 573 2.2e-10 40.5 75.1 13 13 0.0078 6.3 7.0 0.5 6 16 546 556 544 565 0.86 Zinc ribbon domain # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF544-207.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF544-207.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF544-207.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF544-207.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF544-207.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:08:30 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZNF544-208 - 573 1.3e-113 366.8 95.4 1 16 0.001 0.84 10.2 0.6 8 23 149 164 135 166 0.86 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF544-208 - 573 1.3e-113 366.8 95.4 2 16 0.17 1.4e+02 3.1 0.1 10 20 179 190 175 193 0.82 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF544-208 - 573 1.3e-113 366.8 95.4 3 16 0.035 28 5.3 0.5 10 25 207 222 204 223 0.85 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF544-208 - 573 1.3e-113 366.8 95.4 4 16 2.4e-10 2e-07 31.1 1.1 5 25 228 248 227 249 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF544-208 - 573 1.3e-113 366.8 95.4 5 16 2.3e-12 1.9e-09 37.5 0.1 2 25 253 276 252 277 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF544-208 - 573 1.3e-113 366.8 95.4 6 16 1.3e-10 1.1e-07 32.0 0.7 3 24 282 303 280 304 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF544-208 - 573 1.3e-113 366.8 95.4 7 16 3.5e-11 2.9e-08 33.8 0.6 1 25 308 332 308 333 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF544-208 - 573 1.3e-113 366.8 95.4 8 16 4.9e-11 4e-08 33.3 1.5 2 25 337 360 336 361 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF544-208 - 573 1.3e-113 366.8 95.4 9 16 5.2e-12 4.2e-09 36.4 0.2 1 25 364 388 364 389 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF544-208 - 573 1.3e-113 366.8 95.4 10 16 1.2e-10 9.4e-08 32.2 0.4 3 24 394 415 392 416 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF544-208 - 573 1.3e-113 366.8 95.4 11 16 2.7e-10 2.2e-07 31.0 0.4 1 25 420 444 420 445 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF544-208 - 573 1.3e-113 366.8 95.4 12 16 6.7e-12 5.5e-09 36.1 0.5 2 25 449 472 448 473 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF544-208 - 573 1.3e-113 366.8 95.4 13 16 2.7e-11 2.2e-08 34.2 0.2 2 25 477 500 476 501 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF544-208 - 573 1.3e-113 366.8 95.4 14 16 8.2e-12 6.7e-09 35.8 0.4 2 25 505 528 504 528 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF544-208 - 573 1.3e-113 366.8 95.4 15 16 9.5e-10 7.8e-07 29.3 0.7 1 25 532 556 532 557 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF544-208 - 573 1.3e-113 366.8 95.4 16 16 0.0022 1.8 9.2 0.3 2 14 561 573 560 573 0.92 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZNF544-208 - 573 4.1e-71 231.7 120.9 1 15 4.7 3.8e+03 -1.3 0.7 3 16 71 86 70 88 0.76 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF544-208 - 573 4.1e-71 231.7 120.9 2 15 1.5 1.3e+03 0.2 1.7 1 11 156 166 156 172 0.84 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF544-208 - 573 4.1e-71 231.7 120.9 3 15 0.94 7.6e+02 0.9 7.0 2 11 213 222 212 232 0.79 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF544-208 - 573 4.1e-71 231.7 120.9 4 15 1.6e-09 1.3e-06 28.5 0.8 1 23 238 260 238 260 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF544-208 - 573 4.1e-71 231.7 120.9 5 15 6.9e-09 5.6e-06 26.5 0.7 1 23 266 288 266 288 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF544-208 - 573 4.1e-71 231.7 120.9 6 15 2e-05 0.016 15.6 0.4 1 23 294 316 294 316 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF544-208 - 573 4.1e-71 231.7 120.9 7 15 7.3e-09 6e-06 26.4 3.4 1 23 322 344 322 344 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF544-208 - 573 4.1e-71 231.7 120.9 8 15 4.4e-10 3.6e-07 30.3 1.7 1 23 350 372 350 372 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF544-208 - 573 4.1e-71 231.7 120.9 9 15 4.2e-09 3.4e-06 27.2 0.7 1 23 378 400 378 400 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF544-208 - 573 4.1e-71 231.7 120.9 10 15 3.6e-06 0.003 17.9 0.2 1 23 406 428 406 428 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF544-208 - 573 4.1e-71 231.7 120.9 11 15 8.5e-09 7e-06 26.2 2.9 1 23 434 456 434 456 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF544-208 - 573 4.1e-71 231.7 120.9 12 15 9e-09 7.4e-06 26.1 0.2 1 23 462 484 462 484 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF544-208 - 573 4.1e-71 231.7 120.9 13 15 1.2e-08 9.6e-06 25.8 1.6 1 23 490 512 490 512 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF544-208 - 573 4.1e-71 231.7 120.9 14 15 1.1e-07 8.8e-05 22.8 1.0 1 23 518 540 518 540 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF544-208 - 573 4.1e-71 231.7 120.9 15 15 1.2e-10 9.9e-08 32.0 0.9 1 23 546 568 546 568 0.99 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZNF544-208 - 573 9.8e-43 141.1 118.2 1 14 1.5 1.2e+03 0.8 2.2 1 13 156 168 156 173 0.77 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF544-208 - 573 9.8e-43 141.1 118.2 2 14 0.0037 3 8.9 5.2 2 23 213 232 212 233 0.85 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF544-208 - 573 9.8e-43 141.1 118.2 3 14 7e-07 0.00057 20.5 0.7 1 23 238 260 238 261 0.97 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF544-208 - 573 9.8e-43 141.1 118.2 4 14 3.9e-06 0.0031 18.2 0.5 1 23 266 288 266 289 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF544-208 - 573 9.8e-43 141.1 118.2 5 14 0.0022 1.8 9.6 0.5 1 23 294 316 294 317 0.91 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF544-208 - 573 9.8e-43 141.1 118.2 6 14 3.8e-07 0.00031 21.3 2.7 1 23 322 344 322 345 0.97 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF544-208 - 573 9.8e-43 141.1 118.2 7 14 1.5e-07 0.00012 22.6 1.5 1 23 350 372 350 373 0.97 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF544-208 - 573 9.8e-43 141.1 118.2 8 14 3e-06 0.0024 18.5 0.6 1 23 378 400 378 401 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF544-208 - 573 9.8e-43 141.1 118.2 9 14 0.0017 1.4 10.0 0.2 1 23 406 428 406 429 0.89 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF544-208 - 573 9.8e-43 141.1 118.2 10 14 1.7e-06 0.0014 19.3 2.1 3 23 436 456 434 457 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF544-208 - 573 9.8e-43 141.1 118.2 11 14 5.1e-06 0.0041 17.8 0.2 1 23 462 484 462 485 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF544-208 - 573 9.8e-43 141.1 118.2 12 14 5.5e-05 0.045 14.6 1.2 1 23 490 512 490 513 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF544-208 - 573 9.8e-43 141.1 118.2 13 14 8.1e-06 0.0066 17.2 1.2 1 23 518 540 518 541 0.90 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF544-208 - 573 9.8e-43 141.1 118.2 14 14 2.3e-06 0.0019 18.9 0.8 1 23 546 568 546 569 0.96 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF544-208 - 573 4.1e-26 90.4 96.8 1 14 0.14 1.2e+02 2.9 0.7 2 8 156 162 155 164 0.85 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF544-208 - 573 4.1e-26 90.4 96.8 2 14 0.012 9.6 6.3 1.0 4 12 214 222 213 222 0.90 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF544-208 - 573 4.1e-26 90.4 96.8 3 14 1.3e-05 0.011 15.8 0.8 2 24 238 260 238 263 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF544-208 - 573 4.1e-26 90.4 96.8 4 14 0.0002 0.16 12.0 0.3 2 20 266 284 266 290 0.79 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF544-208 - 573 4.1e-26 90.4 96.8 5 14 0.12 99 3.1 0.1 2 12 294 304 294 316 0.85 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF544-208 - 573 4.1e-26 90.4 96.8 6 14 1.5e-06 0.0012 18.8 3.8 2 24 322 344 322 347 0.96 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF544-208 - 573 4.1e-26 90.4 96.8 7 14 4.3e-05 0.035 14.1 1.6 2 24 350 372 350 375 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF544-208 - 573 4.1e-26 90.4 96.8 8 14 0.00029 0.24 11.4 0.7 2 22 378 398 378 402 0.83 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF544-208 - 573 4.1e-26 90.4 96.8 9 14 0.017 14 5.8 0.1 2 12 406 416 406 417 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF544-208 - 573 4.1e-26 90.4 96.8 10 14 0.00012 0.098 12.7 3.0 2 24 434 456 434 459 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF544-208 - 573 4.1e-26 90.4 96.8 11 14 8.6e-05 0.07 13.2 0.2 2 21 462 481 462 485 0.89 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF544-208 - 573 4.1e-26 90.4 96.8 12 14 0.00059 0.48 10.5 1.0 2 24 490 512 490 515 0.88 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF544-208 - 573 4.1e-26 90.4 96.8 13 14 0.0012 0.98 9.5 0.6 2 12 518 528 518 541 0.87 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF544-208 - 573 4.1e-26 90.4 96.8 14 14 3.3e-05 0.027 14.5 0.8 2 24 546 568 546 571 0.95 C2H2-type zinc finger zf-C2H2_jaz PF12171.8 27 ZNF544-208 - 573 2.3e-15 56.4 73.1 1 15 6.2 5.1e+03 -2.0 0.2 14 22 55 63 50 64 0.79 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF544-208 - 573 2.3e-15 56.4 73.1 2 15 1.1 9.3e+02 0.3 0.8 1 11 155 165 155 168 0.83 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF544-208 - 573 2.3e-15 56.4 73.1 3 15 9.6 7.8e+03 -2.7 0.2 4 12 214 222 213 222 0.86 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF544-208 - 573 2.3e-15 56.4 73.1 4 15 0.0022 1.8 9.0 0.3 2 24 238 260 237 260 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF544-208 - 573 2.3e-15 56.4 73.1 5 15 0.014 11 6.4 0.1 2 21 266 285 265 286 0.84 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF544-208 - 573 2.3e-15 56.4 73.1 6 15 0.056 46 4.5 0.2 4 20 296 312 293 314 0.75 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF544-208 - 573 2.3e-15 56.4 73.1 7 15 9.7e-05 0.079 13.3 0.9 2 24 322 344 321 344 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF544-208 - 573 2.3e-15 56.4 73.1 8 15 0.0023 1.9 8.9 0.6 2 24 350 372 349 372 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF544-208 - 573 2.3e-15 56.4 73.1 9 15 0.0058 4.7 7.6 0.1 2 22 378 398 377 398 0.91 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF544-208 - 573 2.3e-15 56.4 73.1 10 15 0.14 1.1e+02 3.2 0.1 4 20 408 424 405 426 0.73 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF544-208 - 573 2.3e-15 56.4 73.1 11 15 4.8e-05 0.039 14.2 0.8 2 24 434 456 433 456 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF544-208 - 573 2.3e-15 56.4 73.1 12 15 0.00085 0.7 10.3 0.1 2 21 462 481 461 482 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF544-208 - 573 2.3e-15 56.4 73.1 13 15 0.0016 1.3 9.4 0.8 2 24 490 512 489 512 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF544-208 - 573 2.3e-15 56.4 73.1 14 15 0.0095 7.8 6.9 0.1 2 20 518 536 517 537 0.95 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF544-208 - 573 2.3e-15 56.4 73.1 15 15 0.0012 0.98 9.8 0.1 2 24 546 568 545 568 0.93 Zinc-finger double-stranded RNA-binding Zn-ribbon_8 PF09723.10 40 ZNF544-208 - 573 2.2e-10 40.5 75.1 1 13 1.6 1.3e+03 -0.4 2.8 5 14 155 164 155 176 0.84 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF544-208 - 573 2.2e-10 40.5 75.1 2 13 1.9 1.6e+03 -0.7 13.1 8 35 214 246 184 250 0.91 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF544-208 - 573 2.2e-10 40.5 75.1 3 13 0.00092 0.75 10.0 4.1 6 36 238 275 237 279 0.83 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF544-208 - 573 2.2e-10 40.5 75.1 4 13 0.00082 0.67 10.1 2.4 6 34 266 301 264 304 0.88 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF544-208 - 573 2.2e-10 40.5 75.1 5 13 0.00019 0.15 12.2 1.4 6 35 294 330 293 335 0.91 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF544-208 - 573 2.2e-10 40.5 75.1 6 13 0.008 6.5 7.0 0.5 6 16 322 332 320 345 0.84 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF544-208 - 573 2.2e-10 40.5 75.1 7 13 0.00031 0.25 11.5 3.0 6 34 350 385 349 390 0.89 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF544-208 - 573 2.2e-10 40.5 75.1 8 13 0.0001 0.084 13.0 1.9 6 35 378 414 377 416 0.90 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF544-208 - 573 2.2e-10 40.5 75.1 9 13 2e-05 0.016 15.3 0.6 6 35 406 442 404 447 0.91 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF544-208 - 573 2.2e-10 40.5 75.1 10 13 3.9e-05 0.032 14.4 2.3 6 38 462 501 461 503 0.88 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF544-208 - 573 2.2e-10 40.5 75.1 11 13 0.0014 1.1 9.4 3.2 6 34 490 525 489 527 0.86 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF544-208 - 573 2.2e-10 40.5 75.1 12 13 0.00026 0.21 11.7 3.1 6 38 518 557 517 559 0.87 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF544-208 - 573 2.2e-10 40.5 75.1 13 13 0.0078 6.3 7.0 0.5 6 16 546 556 544 565 0.86 Zinc ribbon domain # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF544-208.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF544-208.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF544-208.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF544-208.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF544-208.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:08:31 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- KRAB PF01352.27 42 ZNF544-209 - 97 1e-21 76.3 0.7 1 2 1.1e-25 1e-21 76.3 0.7 1 42 13 54 13 54 0.98 KRAB box KRAB PF01352.27 42 ZNF544-209 - 97 1e-21 76.3 0.7 2 2 0.61 5.5e+03 -2.9 0.0 6 15 61 70 60 73 0.70 KRAB box # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF544-209.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF544-209.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF544-209.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF544-209.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF544-209.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:08:31 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF544-210.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF544-210.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF544-210.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF544-210.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF544-210.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:08:32 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF544-211.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF544-211.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF544-211.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF544-211.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF544-211.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:08:32 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZNF544-213 - 573 1.3e-113 366.8 95.4 1 16 0.001 0.84 10.2 0.6 8 23 149 164 135 166 0.86 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF544-213 - 573 1.3e-113 366.8 95.4 2 16 0.17 1.4e+02 3.1 0.1 10 20 179 190 175 193 0.82 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF544-213 - 573 1.3e-113 366.8 95.4 3 16 0.035 28 5.3 0.5 10 25 207 222 204 223 0.85 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF544-213 - 573 1.3e-113 366.8 95.4 4 16 2.4e-10 2e-07 31.1 1.1 5 25 228 248 227 249 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF544-213 - 573 1.3e-113 366.8 95.4 5 16 2.3e-12 1.9e-09 37.5 0.1 2 25 253 276 252 277 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF544-213 - 573 1.3e-113 366.8 95.4 6 16 1.3e-10 1.1e-07 32.0 0.7 3 24 282 303 280 304 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF544-213 - 573 1.3e-113 366.8 95.4 7 16 3.5e-11 2.9e-08 33.8 0.6 1 25 308 332 308 333 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF544-213 - 573 1.3e-113 366.8 95.4 8 16 4.9e-11 4e-08 33.3 1.5 2 25 337 360 336 361 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF544-213 - 573 1.3e-113 366.8 95.4 9 16 5.2e-12 4.2e-09 36.4 0.2 1 25 364 388 364 389 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF544-213 - 573 1.3e-113 366.8 95.4 10 16 1.2e-10 9.4e-08 32.2 0.4 3 24 394 415 392 416 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF544-213 - 573 1.3e-113 366.8 95.4 11 16 2.7e-10 2.2e-07 31.0 0.4 1 25 420 444 420 445 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF544-213 - 573 1.3e-113 366.8 95.4 12 16 6.7e-12 5.5e-09 36.1 0.5 2 25 449 472 448 473 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF544-213 - 573 1.3e-113 366.8 95.4 13 16 2.7e-11 2.2e-08 34.2 0.2 2 25 477 500 476 501 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF544-213 - 573 1.3e-113 366.8 95.4 14 16 8.2e-12 6.7e-09 35.8 0.4 2 25 505 528 504 528 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF544-213 - 573 1.3e-113 366.8 95.4 15 16 9.5e-10 7.8e-07 29.3 0.7 1 25 532 556 532 557 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF544-213 - 573 1.3e-113 366.8 95.4 16 16 0.0022 1.8 9.2 0.3 2 14 561 573 560 573 0.92 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZNF544-213 - 573 4.1e-71 231.7 120.9 1 15 4.7 3.8e+03 -1.3 0.7 3 16 71 86 70 88 0.76 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF544-213 - 573 4.1e-71 231.7 120.9 2 15 1.5 1.3e+03 0.2 1.7 1 11 156 166 156 172 0.84 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF544-213 - 573 4.1e-71 231.7 120.9 3 15 0.94 7.6e+02 0.9 7.0 2 11 213 222 212 232 0.79 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF544-213 - 573 4.1e-71 231.7 120.9 4 15 1.6e-09 1.3e-06 28.5 0.8 1 23 238 260 238 260 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF544-213 - 573 4.1e-71 231.7 120.9 5 15 6.9e-09 5.6e-06 26.5 0.7 1 23 266 288 266 288 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF544-213 - 573 4.1e-71 231.7 120.9 6 15 2e-05 0.016 15.6 0.4 1 23 294 316 294 316 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF544-213 - 573 4.1e-71 231.7 120.9 7 15 7.3e-09 6e-06 26.4 3.4 1 23 322 344 322 344 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF544-213 - 573 4.1e-71 231.7 120.9 8 15 4.4e-10 3.6e-07 30.3 1.7 1 23 350 372 350 372 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF544-213 - 573 4.1e-71 231.7 120.9 9 15 4.2e-09 3.4e-06 27.2 0.7 1 23 378 400 378 400 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF544-213 - 573 4.1e-71 231.7 120.9 10 15 3.6e-06 0.003 17.9 0.2 1 23 406 428 406 428 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF544-213 - 573 4.1e-71 231.7 120.9 11 15 8.5e-09 7e-06 26.2 2.9 1 23 434 456 434 456 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF544-213 - 573 4.1e-71 231.7 120.9 12 15 9e-09 7.4e-06 26.1 0.2 1 23 462 484 462 484 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF544-213 - 573 4.1e-71 231.7 120.9 13 15 1.2e-08 9.6e-06 25.8 1.6 1 23 490 512 490 512 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF544-213 - 573 4.1e-71 231.7 120.9 14 15 1.1e-07 8.8e-05 22.8 1.0 1 23 518 540 518 540 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF544-213 - 573 4.1e-71 231.7 120.9 15 15 1.2e-10 9.9e-08 32.0 0.9 1 23 546 568 546 568 0.99 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZNF544-213 - 573 9.8e-43 141.1 118.2 1 14 1.5 1.2e+03 0.8 2.2 1 13 156 168 156 173 0.77 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF544-213 - 573 9.8e-43 141.1 118.2 2 14 0.0037 3 8.9 5.2 2 23 213 232 212 233 0.85 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF544-213 - 573 9.8e-43 141.1 118.2 3 14 7e-07 0.00057 20.5 0.7 1 23 238 260 238 261 0.97 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF544-213 - 573 9.8e-43 141.1 118.2 4 14 3.9e-06 0.0031 18.2 0.5 1 23 266 288 266 289 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF544-213 - 573 9.8e-43 141.1 118.2 5 14 0.0022 1.8 9.6 0.5 1 23 294 316 294 317 0.91 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF544-213 - 573 9.8e-43 141.1 118.2 6 14 3.8e-07 0.00031 21.3 2.7 1 23 322 344 322 345 0.97 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF544-213 - 573 9.8e-43 141.1 118.2 7 14 1.5e-07 0.00012 22.6 1.5 1 23 350 372 350 373 0.97 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF544-213 - 573 9.8e-43 141.1 118.2 8 14 3e-06 0.0024 18.5 0.6 1 23 378 400 378 401 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF544-213 - 573 9.8e-43 141.1 118.2 9 14 0.0017 1.4 10.0 0.2 1 23 406 428 406 429 0.89 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF544-213 - 573 9.8e-43 141.1 118.2 10 14 1.7e-06 0.0014 19.3 2.1 3 23 436 456 434 457 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF544-213 - 573 9.8e-43 141.1 118.2 11 14 5.1e-06 0.0041 17.8 0.2 1 23 462 484 462 485 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF544-213 - 573 9.8e-43 141.1 118.2 12 14 5.5e-05 0.045 14.6 1.2 1 23 490 512 490 513 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF544-213 - 573 9.8e-43 141.1 118.2 13 14 8.1e-06 0.0066 17.2 1.2 1 23 518 540 518 541 0.90 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF544-213 - 573 9.8e-43 141.1 118.2 14 14 2.3e-06 0.0019 18.9 0.8 1 23 546 568 546 569 0.96 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF544-213 - 573 4.1e-26 90.4 96.8 1 14 0.14 1.2e+02 2.9 0.7 2 8 156 162 155 164 0.85 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF544-213 - 573 4.1e-26 90.4 96.8 2 14 0.012 9.6 6.3 1.0 4 12 214 222 213 222 0.90 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF544-213 - 573 4.1e-26 90.4 96.8 3 14 1.3e-05 0.011 15.8 0.8 2 24 238 260 238 263 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF544-213 - 573 4.1e-26 90.4 96.8 4 14 0.0002 0.16 12.0 0.3 2 20 266 284 266 290 0.79 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF544-213 - 573 4.1e-26 90.4 96.8 5 14 0.12 99 3.1 0.1 2 12 294 304 294 316 0.85 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF544-213 - 573 4.1e-26 90.4 96.8 6 14 1.5e-06 0.0012 18.8 3.8 2 24 322 344 322 347 0.96 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF544-213 - 573 4.1e-26 90.4 96.8 7 14 4.3e-05 0.035 14.1 1.6 2 24 350 372 350 375 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF544-213 - 573 4.1e-26 90.4 96.8 8 14 0.00029 0.24 11.4 0.7 2 22 378 398 378 402 0.83 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF544-213 - 573 4.1e-26 90.4 96.8 9 14 0.017 14 5.8 0.1 2 12 406 416 406 417 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF544-213 - 573 4.1e-26 90.4 96.8 10 14 0.00012 0.098 12.7 3.0 2 24 434 456 434 459 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF544-213 - 573 4.1e-26 90.4 96.8 11 14 8.6e-05 0.07 13.2 0.2 2 21 462 481 462 485 0.89 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF544-213 - 573 4.1e-26 90.4 96.8 12 14 0.00059 0.48 10.5 1.0 2 24 490 512 490 515 0.88 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF544-213 - 573 4.1e-26 90.4 96.8 13 14 0.0012 0.98 9.5 0.6 2 12 518 528 518 541 0.87 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF544-213 - 573 4.1e-26 90.4 96.8 14 14 3.3e-05 0.027 14.5 0.8 2 24 546 568 546 571 0.95 C2H2-type zinc finger zf-C2H2_jaz PF12171.8 27 ZNF544-213 - 573 2.3e-15 56.4 73.1 1 15 6.2 5.1e+03 -2.0 0.2 14 22 55 63 50 64 0.79 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF544-213 - 573 2.3e-15 56.4 73.1 2 15 1.1 9.3e+02 0.3 0.8 1 11 155 165 155 168 0.83 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF544-213 - 573 2.3e-15 56.4 73.1 3 15 9.6 7.8e+03 -2.7 0.2 4 12 214 222 213 222 0.86 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF544-213 - 573 2.3e-15 56.4 73.1 4 15 0.0022 1.8 9.0 0.3 2 24 238 260 237 260 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF544-213 - 573 2.3e-15 56.4 73.1 5 15 0.014 11 6.4 0.1 2 21 266 285 265 286 0.84 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF544-213 - 573 2.3e-15 56.4 73.1 6 15 0.056 46 4.5 0.2 4 20 296 312 293 314 0.75 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF544-213 - 573 2.3e-15 56.4 73.1 7 15 9.7e-05 0.079 13.3 0.9 2 24 322 344 321 344 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF544-213 - 573 2.3e-15 56.4 73.1 8 15 0.0023 1.9 8.9 0.6 2 24 350 372 349 372 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF544-213 - 573 2.3e-15 56.4 73.1 9 15 0.0058 4.7 7.6 0.1 2 22 378 398 377 398 0.91 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF544-213 - 573 2.3e-15 56.4 73.1 10 15 0.14 1.1e+02 3.2 0.1 4 20 408 424 405 426 0.73 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF544-213 - 573 2.3e-15 56.4 73.1 11 15 4.8e-05 0.039 14.2 0.8 2 24 434 456 433 456 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF544-213 - 573 2.3e-15 56.4 73.1 12 15 0.00085 0.7 10.3 0.1 2 21 462 481 461 482 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF544-213 - 573 2.3e-15 56.4 73.1 13 15 0.0016 1.3 9.4 0.8 2 24 490 512 489 512 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF544-213 - 573 2.3e-15 56.4 73.1 14 15 0.0095 7.8 6.9 0.1 2 20 518 536 517 537 0.95 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF544-213 - 573 2.3e-15 56.4 73.1 15 15 0.0012 0.98 9.8 0.1 2 24 546 568 545 568 0.93 Zinc-finger double-stranded RNA-binding Zn-ribbon_8 PF09723.10 40 ZNF544-213 - 573 2.2e-10 40.5 75.1 1 13 1.6 1.3e+03 -0.4 2.8 5 14 155 164 155 176 0.84 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF544-213 - 573 2.2e-10 40.5 75.1 2 13 1.9 1.6e+03 -0.7 13.1 8 35 214 246 184 250 0.91 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF544-213 - 573 2.2e-10 40.5 75.1 3 13 0.00092 0.75 10.0 4.1 6 36 238 275 237 279 0.83 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF544-213 - 573 2.2e-10 40.5 75.1 4 13 0.00082 0.67 10.1 2.4 6 34 266 301 264 304 0.88 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF544-213 - 573 2.2e-10 40.5 75.1 5 13 0.00019 0.15 12.2 1.4 6 35 294 330 293 335 0.91 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF544-213 - 573 2.2e-10 40.5 75.1 6 13 0.008 6.5 7.0 0.5 6 16 322 332 320 345 0.84 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF544-213 - 573 2.2e-10 40.5 75.1 7 13 0.00031 0.25 11.5 3.0 6 34 350 385 349 390 0.89 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF544-213 - 573 2.2e-10 40.5 75.1 8 13 0.0001 0.084 13.0 1.9 6 35 378 414 377 416 0.90 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF544-213 - 573 2.2e-10 40.5 75.1 9 13 2e-05 0.016 15.3 0.6 6 35 406 442 404 447 0.91 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF544-213 - 573 2.2e-10 40.5 75.1 10 13 3.9e-05 0.032 14.4 2.3 6 38 462 501 461 503 0.88 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF544-213 - 573 2.2e-10 40.5 75.1 11 13 0.0014 1.1 9.4 3.2 6 34 490 525 489 527 0.86 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF544-213 - 573 2.2e-10 40.5 75.1 12 13 0.00026 0.21 11.7 3.1 6 38 518 557 517 559 0.87 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF544-213 - 573 2.2e-10 40.5 75.1 13 13 0.0078 6.3 7.0 0.5 6 16 546 556 544 565 0.86 Zinc ribbon domain # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF544-213.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF544-213.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF544-213.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF544-213.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF544-213.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:08:32 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF544-214.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF544-214.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF544-214.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF544-214.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF544-214.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:08:33 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZNF544-215 - 573 1.3e-113 366.8 95.4 1 16 0.001 0.84 10.2 0.6 8 23 149 164 135 166 0.86 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF544-215 - 573 1.3e-113 366.8 95.4 2 16 0.17 1.4e+02 3.1 0.1 10 20 179 190 175 193 0.82 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF544-215 - 573 1.3e-113 366.8 95.4 3 16 0.035 28 5.3 0.5 10 25 207 222 204 223 0.85 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF544-215 - 573 1.3e-113 366.8 95.4 4 16 2.4e-10 2e-07 31.1 1.1 5 25 228 248 227 249 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF544-215 - 573 1.3e-113 366.8 95.4 5 16 2.3e-12 1.9e-09 37.5 0.1 2 25 253 276 252 277 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF544-215 - 573 1.3e-113 366.8 95.4 6 16 1.3e-10 1.1e-07 32.0 0.7 3 24 282 303 280 304 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF544-215 - 573 1.3e-113 366.8 95.4 7 16 3.5e-11 2.9e-08 33.8 0.6 1 25 308 332 308 333 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF544-215 - 573 1.3e-113 366.8 95.4 8 16 4.9e-11 4e-08 33.3 1.5 2 25 337 360 336 361 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF544-215 - 573 1.3e-113 366.8 95.4 9 16 5.2e-12 4.2e-09 36.4 0.2 1 25 364 388 364 389 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF544-215 - 573 1.3e-113 366.8 95.4 10 16 1.2e-10 9.4e-08 32.2 0.4 3 24 394 415 392 416 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF544-215 - 573 1.3e-113 366.8 95.4 11 16 2.7e-10 2.2e-07 31.0 0.4 1 25 420 444 420 445 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF544-215 - 573 1.3e-113 366.8 95.4 12 16 6.7e-12 5.5e-09 36.1 0.5 2 25 449 472 448 473 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF544-215 - 573 1.3e-113 366.8 95.4 13 16 2.7e-11 2.2e-08 34.2 0.2 2 25 477 500 476 501 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF544-215 - 573 1.3e-113 366.8 95.4 14 16 8.2e-12 6.7e-09 35.8 0.4 2 25 505 528 504 528 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF544-215 - 573 1.3e-113 366.8 95.4 15 16 9.5e-10 7.8e-07 29.3 0.7 1 25 532 556 532 557 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF544-215 - 573 1.3e-113 366.8 95.4 16 16 0.0022 1.8 9.2 0.3 2 14 561 573 560 573 0.92 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZNF544-215 - 573 4.1e-71 231.7 120.9 1 15 4.7 3.8e+03 -1.3 0.7 3 16 71 86 70 88 0.76 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF544-215 - 573 4.1e-71 231.7 120.9 2 15 1.5 1.3e+03 0.2 1.7 1 11 156 166 156 172 0.84 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF544-215 - 573 4.1e-71 231.7 120.9 3 15 0.94 7.6e+02 0.9 7.0 2 11 213 222 212 232 0.79 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF544-215 - 573 4.1e-71 231.7 120.9 4 15 1.6e-09 1.3e-06 28.5 0.8 1 23 238 260 238 260 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF544-215 - 573 4.1e-71 231.7 120.9 5 15 6.9e-09 5.6e-06 26.5 0.7 1 23 266 288 266 288 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF544-215 - 573 4.1e-71 231.7 120.9 6 15 2e-05 0.016 15.6 0.4 1 23 294 316 294 316 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF544-215 - 573 4.1e-71 231.7 120.9 7 15 7.3e-09 6e-06 26.4 3.4 1 23 322 344 322 344 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF544-215 - 573 4.1e-71 231.7 120.9 8 15 4.4e-10 3.6e-07 30.3 1.7 1 23 350 372 350 372 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF544-215 - 573 4.1e-71 231.7 120.9 9 15 4.2e-09 3.4e-06 27.2 0.7 1 23 378 400 378 400 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF544-215 - 573 4.1e-71 231.7 120.9 10 15 3.6e-06 0.003 17.9 0.2 1 23 406 428 406 428 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF544-215 - 573 4.1e-71 231.7 120.9 11 15 8.5e-09 7e-06 26.2 2.9 1 23 434 456 434 456 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF544-215 - 573 4.1e-71 231.7 120.9 12 15 9e-09 7.4e-06 26.1 0.2 1 23 462 484 462 484 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF544-215 - 573 4.1e-71 231.7 120.9 13 15 1.2e-08 9.6e-06 25.8 1.6 1 23 490 512 490 512 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF544-215 - 573 4.1e-71 231.7 120.9 14 15 1.1e-07 8.8e-05 22.8 1.0 1 23 518 540 518 540 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF544-215 - 573 4.1e-71 231.7 120.9 15 15 1.2e-10 9.9e-08 32.0 0.9 1 23 546 568 546 568 0.99 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZNF544-215 - 573 9.8e-43 141.1 118.2 1 14 1.5 1.2e+03 0.8 2.2 1 13 156 168 156 173 0.77 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF544-215 - 573 9.8e-43 141.1 118.2 2 14 0.0037 3 8.9 5.2 2 23 213 232 212 233 0.85 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF544-215 - 573 9.8e-43 141.1 118.2 3 14 7e-07 0.00057 20.5 0.7 1 23 238 260 238 261 0.97 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF544-215 - 573 9.8e-43 141.1 118.2 4 14 3.9e-06 0.0031 18.2 0.5 1 23 266 288 266 289 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF544-215 - 573 9.8e-43 141.1 118.2 5 14 0.0022 1.8 9.6 0.5 1 23 294 316 294 317 0.91 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF544-215 - 573 9.8e-43 141.1 118.2 6 14 3.8e-07 0.00031 21.3 2.7 1 23 322 344 322 345 0.97 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF544-215 - 573 9.8e-43 141.1 118.2 7 14 1.5e-07 0.00012 22.6 1.5 1 23 350 372 350 373 0.97 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF544-215 - 573 9.8e-43 141.1 118.2 8 14 3e-06 0.0024 18.5 0.6 1 23 378 400 378 401 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF544-215 - 573 9.8e-43 141.1 118.2 9 14 0.0017 1.4 10.0 0.2 1 23 406 428 406 429 0.89 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF544-215 - 573 9.8e-43 141.1 118.2 10 14 1.7e-06 0.0014 19.3 2.1 3 23 436 456 434 457 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF544-215 - 573 9.8e-43 141.1 118.2 11 14 5.1e-06 0.0041 17.8 0.2 1 23 462 484 462 485 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF544-215 - 573 9.8e-43 141.1 118.2 12 14 5.5e-05 0.045 14.6 1.2 1 23 490 512 490 513 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF544-215 - 573 9.8e-43 141.1 118.2 13 14 8.1e-06 0.0066 17.2 1.2 1 23 518 540 518 541 0.90 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF544-215 - 573 9.8e-43 141.1 118.2 14 14 2.3e-06 0.0019 18.9 0.8 1 23 546 568 546 569 0.96 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF544-215 - 573 4.1e-26 90.4 96.8 1 14 0.14 1.2e+02 2.9 0.7 2 8 156 162 155 164 0.85 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF544-215 - 573 4.1e-26 90.4 96.8 2 14 0.012 9.6 6.3 1.0 4 12 214 222 213 222 0.90 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF544-215 - 573 4.1e-26 90.4 96.8 3 14 1.3e-05 0.011 15.8 0.8 2 24 238 260 238 263 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF544-215 - 573 4.1e-26 90.4 96.8 4 14 0.0002 0.16 12.0 0.3 2 20 266 284 266 290 0.79 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF544-215 - 573 4.1e-26 90.4 96.8 5 14 0.12 99 3.1 0.1 2 12 294 304 294 316 0.85 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF544-215 - 573 4.1e-26 90.4 96.8 6 14 1.5e-06 0.0012 18.8 3.8 2 24 322 344 322 347 0.96 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF544-215 - 573 4.1e-26 90.4 96.8 7 14 4.3e-05 0.035 14.1 1.6 2 24 350 372 350 375 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF544-215 - 573 4.1e-26 90.4 96.8 8 14 0.00029 0.24 11.4 0.7 2 22 378 398 378 402 0.83 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF544-215 - 573 4.1e-26 90.4 96.8 9 14 0.017 14 5.8 0.1 2 12 406 416 406 417 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF544-215 - 573 4.1e-26 90.4 96.8 10 14 0.00012 0.098 12.7 3.0 2 24 434 456 434 459 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF544-215 - 573 4.1e-26 90.4 96.8 11 14 8.6e-05 0.07 13.2 0.2 2 21 462 481 462 485 0.89 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF544-215 - 573 4.1e-26 90.4 96.8 12 14 0.00059 0.48 10.5 1.0 2 24 490 512 490 515 0.88 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF544-215 - 573 4.1e-26 90.4 96.8 13 14 0.0012 0.98 9.5 0.6 2 12 518 528 518 541 0.87 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF544-215 - 573 4.1e-26 90.4 96.8 14 14 3.3e-05 0.027 14.5 0.8 2 24 546 568 546 571 0.95 C2H2-type zinc finger zf-C2H2_jaz PF12171.8 27 ZNF544-215 - 573 2.3e-15 56.4 73.1 1 15 6.2 5.1e+03 -2.0 0.2 14 22 55 63 50 64 0.79 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF544-215 - 573 2.3e-15 56.4 73.1 2 15 1.1 9.3e+02 0.3 0.8 1 11 155 165 155 168 0.83 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF544-215 - 573 2.3e-15 56.4 73.1 3 15 9.6 7.8e+03 -2.7 0.2 4 12 214 222 213 222 0.86 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF544-215 - 573 2.3e-15 56.4 73.1 4 15 0.0022 1.8 9.0 0.3 2 24 238 260 237 260 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF544-215 - 573 2.3e-15 56.4 73.1 5 15 0.014 11 6.4 0.1 2 21 266 285 265 286 0.84 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF544-215 - 573 2.3e-15 56.4 73.1 6 15 0.056 46 4.5 0.2 4 20 296 312 293 314 0.75 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF544-215 - 573 2.3e-15 56.4 73.1 7 15 9.7e-05 0.079 13.3 0.9 2 24 322 344 321 344 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF544-215 - 573 2.3e-15 56.4 73.1 8 15 0.0023 1.9 8.9 0.6 2 24 350 372 349 372 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF544-215 - 573 2.3e-15 56.4 73.1 9 15 0.0058 4.7 7.6 0.1 2 22 378 398 377 398 0.91 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF544-215 - 573 2.3e-15 56.4 73.1 10 15 0.14 1.1e+02 3.2 0.1 4 20 408 424 405 426 0.73 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF544-215 - 573 2.3e-15 56.4 73.1 11 15 4.8e-05 0.039 14.2 0.8 2 24 434 456 433 456 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF544-215 - 573 2.3e-15 56.4 73.1 12 15 0.00085 0.7 10.3 0.1 2 21 462 481 461 482 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF544-215 - 573 2.3e-15 56.4 73.1 13 15 0.0016 1.3 9.4 0.8 2 24 490 512 489 512 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF544-215 - 573 2.3e-15 56.4 73.1 14 15 0.0095 7.8 6.9 0.1 2 20 518 536 517 537 0.95 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF544-215 - 573 2.3e-15 56.4 73.1 15 15 0.0012 0.98 9.8 0.1 2 24 546 568 545 568 0.93 Zinc-finger double-stranded RNA-binding Zn-ribbon_8 PF09723.10 40 ZNF544-215 - 573 2.2e-10 40.5 75.1 1 13 1.6 1.3e+03 -0.4 2.8 5 14 155 164 155 176 0.84 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF544-215 - 573 2.2e-10 40.5 75.1 2 13 1.9 1.6e+03 -0.7 13.1 8 35 214 246 184 250 0.91 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF544-215 - 573 2.2e-10 40.5 75.1 3 13 0.00092 0.75 10.0 4.1 6 36 238 275 237 279 0.83 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF544-215 - 573 2.2e-10 40.5 75.1 4 13 0.00082 0.67 10.1 2.4 6 34 266 301 264 304 0.88 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF544-215 - 573 2.2e-10 40.5 75.1 5 13 0.00019 0.15 12.2 1.4 6 35 294 330 293 335 0.91 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF544-215 - 573 2.2e-10 40.5 75.1 6 13 0.008 6.5 7.0 0.5 6 16 322 332 320 345 0.84 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF544-215 - 573 2.2e-10 40.5 75.1 7 13 0.00031 0.25 11.5 3.0 6 34 350 385 349 390 0.89 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF544-215 - 573 2.2e-10 40.5 75.1 8 13 0.0001 0.084 13.0 1.9 6 35 378 414 377 416 0.90 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF544-215 - 573 2.2e-10 40.5 75.1 9 13 2e-05 0.016 15.3 0.6 6 35 406 442 404 447 0.91 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF544-215 - 573 2.2e-10 40.5 75.1 10 13 3.9e-05 0.032 14.4 2.3 6 38 462 501 461 503 0.88 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF544-215 - 573 2.2e-10 40.5 75.1 11 13 0.0014 1.1 9.4 3.2 6 34 490 525 489 527 0.86 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF544-215 - 573 2.2e-10 40.5 75.1 12 13 0.00026 0.21 11.7 3.1 6 38 518 557 517 559 0.87 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF544-215 - 573 2.2e-10 40.5 75.1 13 13 0.0078 6.3 7.0 0.5 6 16 546 556 544 565 0.86 Zinc ribbon domain # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF544-215.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF544-215.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF544-215.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF544-215.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF544-215.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:08:33 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZNF544-216 - 687 3.6e-112 362.3 95.4 1 16 0.0011 1 9.9 0.6 8 23 263 278 249 280 0.86 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF544-216 - 687 3.6e-112 362.3 95.4 2 16 0.18 1.7e+02 2.9 0.1 10 20 293 304 289 307 0.82 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF544-216 - 687 3.6e-112 362.3 95.4 3 16 0.037 35 5.1 0.5 10 25 321 336 318 337 0.85 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF544-216 - 687 3.6e-112 362.3 95.4 4 16 2.6e-10 2.4e-07 30.8 1.1 5 25 342 362 341 363 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF544-216 - 687 3.6e-112 362.3 95.4 5 16 2.5e-12 2.4e-09 37.2 0.1 2 25 367 390 366 391 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF544-216 - 687 3.6e-112 362.3 95.4 6 16 1.4e-10 1.3e-07 31.7 0.7 3 24 396 417 394 418 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF544-216 - 687 3.6e-112 362.3 95.4 7 16 3.8e-11 3.6e-08 33.5 0.6 1 25 422 446 422 447 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF544-216 - 687 3.6e-112 362.3 95.4 8 16 5.2e-11 4.9e-08 33.0 1.5 2 25 451 474 450 475 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF544-216 - 687 3.6e-112 362.3 95.4 9 16 5.6e-12 5.3e-09 36.1 0.2 1 25 478 502 478 503 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF544-216 - 687 3.6e-112 362.3 95.4 10 16 1.2e-10 1.2e-07 31.9 0.4 3 24 508 529 506 530 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF544-216 - 687 3.6e-112 362.3 95.4 11 16 2.9e-10 2.7e-07 30.7 0.4 1 25 534 558 534 559 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF544-216 - 687 3.6e-112 362.3 95.4 12 16 7.2e-12 6.8e-09 35.8 0.5 2 25 563 586 562 587 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF544-216 - 687 3.6e-112 362.3 95.4 13 16 2.9e-11 2.7e-08 33.9 0.2 2 25 591 614 590 615 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF544-216 - 687 3.6e-112 362.3 95.4 14 16 8.8e-12 8.3e-09 35.5 0.4 2 25 619 642 618 642 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF544-216 - 687 3.6e-112 362.3 95.4 15 16 1e-09 9.6e-07 29.0 0.7 1 25 646 670 646 671 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF544-216 - 687 3.6e-112 362.3 95.4 16 16 0.0023 2.2 8.9 0.3 2 14 675 687 674 687 0.92 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZNF544-216 - 687 8.4e-71 230.7 118.0 1 15 5 4.7e+03 -1.6 0.7 3 16 185 200 184 202 0.76 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF544-216 - 687 8.4e-71 230.7 118.0 2 15 1.6 1.5e+03 -0.1 1.7 1 11 270 280 270 286 0.84 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF544-216 - 687 8.4e-71 230.7 118.0 3 15 0.68 6.4e+02 1.1 6.4 2 11 327 336 326 346 0.79 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF544-216 - 687 8.4e-71 230.7 118.0 4 15 1.7e-09 1.6e-06 28.2 0.8 1 23 352 374 352 374 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF544-216 - 687 8.4e-71 230.7 118.0 5 15 7.4e-09 6.9e-06 26.2 0.7 1 23 380 402 380 402 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF544-216 - 687 8.4e-71 230.7 118.0 6 15 2.1e-05 0.02 15.3 0.4 1 23 408 430 408 430 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF544-216 - 687 8.4e-71 230.7 118.0 7 15 7.8e-09 7.4e-06 26.1 3.4 1 23 436 458 436 458 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF544-216 - 687 8.4e-71 230.7 118.0 8 15 4.7e-10 4.4e-07 30.0 1.7 1 23 464 486 464 486 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF544-216 - 687 8.4e-71 230.7 118.0 9 15 4.5e-09 4.2e-06 26.9 0.7 1 23 492 514 492 514 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF544-216 - 687 8.4e-71 230.7 118.0 10 15 3.9e-06 0.0037 17.6 0.2 1 23 520 542 520 542 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF544-216 - 687 8.4e-71 230.7 118.0 11 15 9.1e-09 8.6e-06 25.9 2.9 1 23 548 570 548 570 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF544-216 - 687 8.4e-71 230.7 118.0 12 15 9.6e-09 9.1e-06 25.9 0.2 1 23 576 598 576 598 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF544-216 - 687 8.4e-71 230.7 118.0 13 15 1.3e-08 1.2e-05 25.5 1.6 1 23 604 626 604 626 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF544-216 - 687 8.4e-71 230.7 118.0 14 15 1.1e-07 0.00011 22.5 1.0 1 23 632 654 632 654 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF544-216 - 687 8.4e-71 230.7 118.0 15 15 1.3e-10 1.2e-07 31.7 0.9 1 23 660 682 660 682 0.99 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZNF544-216 - 687 1.3e-42 140.7 115.0 1 14 1.6 1.5e+03 0.5 2.2 1 13 270 282 270 287 0.77 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF544-216 - 687 1.3e-42 140.7 115.0 2 14 0.004 3.7 8.6 5.2 2 23 327 346 326 347 0.85 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF544-216 - 687 1.3e-42 140.7 115.0 3 14 7.5e-07 0.00071 20.2 0.7 1 23 352 374 352 375 0.97 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF544-216 - 687 1.3e-42 140.7 115.0 4 14 4.1e-06 0.0039 17.9 0.5 1 23 380 402 380 403 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF544-216 - 687 1.3e-42 140.7 115.0 5 14 0.0024 2.2 9.3 0.5 1 23 408 430 408 431 0.91 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF544-216 - 687 1.3e-42 140.7 115.0 6 14 4e-07 0.00038 21.1 2.7 1 23 436 458 436 459 0.97 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF544-216 - 687 1.3e-42 140.7 115.0 7 14 1.6e-07 0.00015 22.3 1.5 1 23 464 486 464 487 0.97 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF544-216 - 687 1.3e-42 140.7 115.0 8 14 3.2e-06 0.003 18.2 0.6 1 23 492 514 492 515 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF544-216 - 687 1.3e-42 140.7 115.0 9 14 0.0018 1.7 9.7 0.2 1 23 520 542 520 543 0.89 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF544-216 - 687 1.3e-42 140.7 115.0 10 14 1.9e-06 0.0018 19.0 2.1 3 23 550 570 548 571 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF544-216 - 687 1.3e-42 140.7 115.0 11 14 5.4e-06 0.0051 17.5 0.2 1 23 576 598 576 599 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF544-216 - 687 1.3e-42 140.7 115.0 12 14 5.9e-05 0.055 14.3 1.2 1 23 604 626 604 627 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF544-216 - 687 1.3e-42 140.7 115.0 13 14 8.6e-06 0.0082 16.9 1.2 1 23 632 654 632 655 0.90 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF544-216 - 687 1.3e-42 140.7 115.0 14 14 2.5e-06 0.0023 18.6 0.8 1 23 660 682 660 683 0.96 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF544-216 - 687 6.8e-25 86.5 96.8 1 14 0.15 1.4e+02 2.6 0.7 2 8 270 276 269 278 0.85 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF544-216 - 687 6.8e-25 86.5 96.8 2 14 0.012 12 6.1 1.0 4 12 328 336 327 336 0.90 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF544-216 - 687 6.8e-25 86.5 96.8 3 14 1.4e-05 0.013 15.5 0.8 2 24 352 374 352 377 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF544-216 - 687 6.8e-25 86.5 96.8 4 14 0.00021 0.2 11.7 0.3 2 20 380 398 380 404 0.79 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF544-216 - 687 6.8e-25 86.5 96.8 5 14 0.13 1.2e+02 2.8 0.1 2 12 408 418 408 430 0.85 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF544-216 - 687 6.8e-25 86.5 96.8 6 14 1.6e-06 0.0015 18.5 3.8 2 24 436 458 436 461 0.96 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF544-216 - 687 6.8e-25 86.5 96.8 7 14 4.6e-05 0.043 13.8 1.6 2 24 464 486 464 489 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF544-216 - 687 6.8e-25 86.5 96.8 8 14 0.00031 0.29 11.2 0.7 2 22 492 512 492 516 0.83 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF544-216 - 687 6.8e-25 86.5 96.8 9 14 0.018 17 5.6 0.1 2 12 520 530 520 531 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF544-216 - 687 6.8e-25 86.5 96.8 10 14 0.00013 0.12 12.4 3.0 2 24 548 570 548 573 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF544-216 - 687 6.8e-25 86.5 96.8 11 14 9.1e-05 0.086 12.9 0.2 2 21 576 595 576 599 0.89 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF544-216 - 687 6.8e-25 86.5 96.8 12 14 0.00063 0.6 10.2 1.0 2 24 604 626 604 629 0.88 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF544-216 - 687 6.8e-25 86.5 96.8 13 14 0.0013 1.2 9.2 0.6 2 12 632 642 632 655 0.87 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF544-216 - 687 6.8e-25 86.5 96.8 14 14 3.5e-05 0.033 14.2 0.8 2 24 660 682 660 685 0.95 C2H2-type zinc finger KRAB PF01352.27 42 ZNF544-216 - 687 1.3e-20 72.8 0.7 1 1 2.5e-23 2.4e-20 71.9 0.7 1 42 13 54 13 54 0.98 KRAB box zf-C2H2_jaz PF12171.8 27 ZNF544-216 - 687 3.1e-14 52.8 73.1 1 14 6.6 6.2e+03 -2.3 0.2 14 22 169 177 164 178 0.79 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF544-216 - 687 3.1e-14 52.8 73.1 2 14 1.2 1.1e+03 0.0 0.8 1 11 269 279 269 282 0.83 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF544-216 - 687 3.1e-14 52.8 73.1 3 14 0.0023 2.2 8.7 0.3 2 24 352 374 351 374 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF544-216 - 687 3.1e-14 52.8 73.1 4 14 0.015 14 6.1 0.1 2 21 380 399 379 400 0.84 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF544-216 - 687 3.1e-14 52.8 73.1 5 14 0.06 56 4.2 0.2 4 20 410 426 407 428 0.75 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF544-216 - 687 3.1e-14 52.8 73.1 6 14 0.0001 0.098 13.0 0.9 2 24 436 458 435 458 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF544-216 - 687 3.1e-14 52.8 73.1 7 14 0.0025 2.4 8.6 0.6 2 24 464 486 463 486 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF544-216 - 687 3.1e-14 52.8 73.1 8 14 0.0062 5.8 7.3 0.1 2 22 492 512 491 512 0.91 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF544-216 - 687 3.1e-14 52.8 73.1 9 14 0.14 1.4e+02 3.0 0.1 4 20 522 538 519 540 0.73 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF544-216 - 687 3.1e-14 52.8 73.1 10 14 5.1e-05 0.048 14.0 0.8 2 24 548 570 547 570 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF544-216 - 687 3.1e-14 52.8 73.1 11 14 0.00091 0.86 10.0 0.1 2 21 576 595 575 596 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF544-216 - 687 3.1e-14 52.8 73.1 12 14 0.0017 1.6 9.1 0.8 2 24 604 626 603 626 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF544-216 - 687 3.1e-14 52.8 73.1 13 14 0.01 9.5 6.6 0.1 2 20 632 650 631 651 0.95 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF544-216 - 687 3.1e-14 52.8 73.1 14 14 0.0013 1.2 9.5 0.1 2 24 660 682 659 682 0.93 Zinc-finger double-stranded RNA-binding Zn-ribbon_8 PF09723.10 40 ZNF544-216 - 687 8.6e-10 38.6 74.1 1 14 1.7 1.6e+03 -0.7 2.8 5 14 269 278 269 290 0.84 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF544-216 - 687 8.6e-10 38.6 74.1 2 14 2.8 2.7e+03 -1.4 5.3 28 34 327 333 298 341 0.60 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF544-216 - 687 8.6e-10 38.6 74.1 3 14 0.063 59 3.9 8.1 8 35 328 360 326 364 0.85 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF544-216 - 687 8.6e-10 38.6 74.1 4 14 0.0012 1.1 9.4 4.2 6 36 352 389 350 392 0.84 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF544-216 - 687 8.6e-10 38.6 74.1 5 14 0.00097 0.92 9.7 2.5 6 34 380 415 379 418 0.87 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF544-216 - 687 8.6e-10 38.6 74.1 6 14 0.00023 0.22 11.7 1.6 6 35 408 444 407 449 0.91 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF544-216 - 687 8.6e-10 38.6 74.1 7 14 0.0013 1.3 9.3 4.6 6 35 436 472 435 476 0.82 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF544-216 - 687 8.6e-10 38.6 74.1 8 14 0.00018 0.17 12.0 2.3 6 35 464 500 463 508 0.89 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF544-216 - 687 8.6e-10 38.6 74.1 9 14 0.00011 0.11 12.7 1.9 6 35 492 528 491 530 0.90 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF544-216 - 687 8.6e-10 38.6 74.1 10 14 1.9e-05 0.018 15.2 0.4 6 35 520 556 519 561 0.90 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF544-216 - 687 8.6e-10 38.6 74.1 11 14 4e-05 0.038 14.1 2.2 6 38 576 615 574 617 0.88 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF544-216 - 687 8.6e-10 38.6 74.1 12 14 0.001 0.98 9.6 3.0 6 34 604 639 603 642 0.85 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF544-216 - 687 8.6e-10 38.6 74.1 13 14 0.00024 0.23 11.6 2.9 6 38 632 671 630 673 0.87 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF544-216 - 687 8.6e-10 38.6 74.1 14 14 0.0085 8 6.7 0.5 6 16 660 670 658 678 0.86 Zinc ribbon domain # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF544-216.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF544-216.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF544-216.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF544-216.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF544-216.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:08:34 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZNF544-217 - 687 3.6e-112 362.3 95.4 1 16 0.0011 1 9.9 0.6 8 23 263 278 249 280 0.86 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF544-217 - 687 3.6e-112 362.3 95.4 2 16 0.18 1.7e+02 2.9 0.1 10 20 293 304 289 307 0.82 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF544-217 - 687 3.6e-112 362.3 95.4 3 16 0.037 35 5.1 0.5 10 25 321 336 318 337 0.85 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF544-217 - 687 3.6e-112 362.3 95.4 4 16 2.6e-10 2.4e-07 30.8 1.1 5 25 342 362 341 363 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF544-217 - 687 3.6e-112 362.3 95.4 5 16 2.5e-12 2.4e-09 37.2 0.1 2 25 367 390 366 391 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF544-217 - 687 3.6e-112 362.3 95.4 6 16 1.4e-10 1.3e-07 31.7 0.7 3 24 396 417 394 418 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF544-217 - 687 3.6e-112 362.3 95.4 7 16 3.8e-11 3.6e-08 33.5 0.6 1 25 422 446 422 447 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF544-217 - 687 3.6e-112 362.3 95.4 8 16 5.2e-11 4.9e-08 33.0 1.5 2 25 451 474 450 475 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF544-217 - 687 3.6e-112 362.3 95.4 9 16 5.6e-12 5.3e-09 36.1 0.2 1 25 478 502 478 503 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF544-217 - 687 3.6e-112 362.3 95.4 10 16 1.2e-10 1.2e-07 31.9 0.4 3 24 508 529 506 530 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF544-217 - 687 3.6e-112 362.3 95.4 11 16 2.9e-10 2.7e-07 30.7 0.4 1 25 534 558 534 559 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF544-217 - 687 3.6e-112 362.3 95.4 12 16 7.2e-12 6.8e-09 35.8 0.5 2 25 563 586 562 587 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF544-217 - 687 3.6e-112 362.3 95.4 13 16 2.9e-11 2.7e-08 33.9 0.2 2 25 591 614 590 615 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF544-217 - 687 3.6e-112 362.3 95.4 14 16 8.8e-12 8.3e-09 35.5 0.4 2 25 619 642 618 642 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF544-217 - 687 3.6e-112 362.3 95.4 15 16 1e-09 9.6e-07 29.0 0.7 1 25 646 670 646 671 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF544-217 - 687 3.6e-112 362.3 95.4 16 16 0.0023 2.2 8.9 0.3 2 14 675 687 674 687 0.92 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZNF544-217 - 687 8.4e-71 230.7 118.0 1 15 5 4.7e+03 -1.6 0.7 3 16 185 200 184 202 0.76 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF544-217 - 687 8.4e-71 230.7 118.0 2 15 1.6 1.5e+03 -0.1 1.7 1 11 270 280 270 286 0.84 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF544-217 - 687 8.4e-71 230.7 118.0 3 15 0.68 6.4e+02 1.1 6.4 2 11 327 336 326 346 0.79 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF544-217 - 687 8.4e-71 230.7 118.0 4 15 1.7e-09 1.6e-06 28.2 0.8 1 23 352 374 352 374 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF544-217 - 687 8.4e-71 230.7 118.0 5 15 7.4e-09 6.9e-06 26.2 0.7 1 23 380 402 380 402 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF544-217 - 687 8.4e-71 230.7 118.0 6 15 2.1e-05 0.02 15.3 0.4 1 23 408 430 408 430 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF544-217 - 687 8.4e-71 230.7 118.0 7 15 7.8e-09 7.4e-06 26.1 3.4 1 23 436 458 436 458 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF544-217 - 687 8.4e-71 230.7 118.0 8 15 4.7e-10 4.4e-07 30.0 1.7 1 23 464 486 464 486 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF544-217 - 687 8.4e-71 230.7 118.0 9 15 4.5e-09 4.2e-06 26.9 0.7 1 23 492 514 492 514 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF544-217 - 687 8.4e-71 230.7 118.0 10 15 3.9e-06 0.0037 17.6 0.2 1 23 520 542 520 542 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF544-217 - 687 8.4e-71 230.7 118.0 11 15 9.1e-09 8.6e-06 25.9 2.9 1 23 548 570 548 570 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF544-217 - 687 8.4e-71 230.7 118.0 12 15 9.6e-09 9.1e-06 25.9 0.2 1 23 576 598 576 598 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF544-217 - 687 8.4e-71 230.7 118.0 13 15 1.3e-08 1.2e-05 25.5 1.6 1 23 604 626 604 626 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF544-217 - 687 8.4e-71 230.7 118.0 14 15 1.1e-07 0.00011 22.5 1.0 1 23 632 654 632 654 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF544-217 - 687 8.4e-71 230.7 118.0 15 15 1.3e-10 1.2e-07 31.7 0.9 1 23 660 682 660 682 0.99 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZNF544-217 - 687 1.3e-42 140.7 115.0 1 14 1.6 1.5e+03 0.5 2.2 1 13 270 282 270 287 0.77 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF544-217 - 687 1.3e-42 140.7 115.0 2 14 0.004 3.7 8.6 5.2 2 23 327 346 326 347 0.85 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF544-217 - 687 1.3e-42 140.7 115.0 3 14 7.5e-07 0.00071 20.2 0.7 1 23 352 374 352 375 0.97 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF544-217 - 687 1.3e-42 140.7 115.0 4 14 4.1e-06 0.0039 17.9 0.5 1 23 380 402 380 403 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF544-217 - 687 1.3e-42 140.7 115.0 5 14 0.0024 2.2 9.3 0.5 1 23 408 430 408 431 0.91 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF544-217 - 687 1.3e-42 140.7 115.0 6 14 4e-07 0.00038 21.1 2.7 1 23 436 458 436 459 0.97 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF544-217 - 687 1.3e-42 140.7 115.0 7 14 1.6e-07 0.00015 22.3 1.5 1 23 464 486 464 487 0.97 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF544-217 - 687 1.3e-42 140.7 115.0 8 14 3.2e-06 0.003 18.2 0.6 1 23 492 514 492 515 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF544-217 - 687 1.3e-42 140.7 115.0 9 14 0.0018 1.7 9.7 0.2 1 23 520 542 520 543 0.89 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF544-217 - 687 1.3e-42 140.7 115.0 10 14 1.9e-06 0.0018 19.0 2.1 3 23 550 570 548 571 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF544-217 - 687 1.3e-42 140.7 115.0 11 14 5.4e-06 0.0051 17.5 0.2 1 23 576 598 576 599 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF544-217 - 687 1.3e-42 140.7 115.0 12 14 5.9e-05 0.055 14.3 1.2 1 23 604 626 604 627 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF544-217 - 687 1.3e-42 140.7 115.0 13 14 8.6e-06 0.0082 16.9 1.2 1 23 632 654 632 655 0.90 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF544-217 - 687 1.3e-42 140.7 115.0 14 14 2.5e-06 0.0023 18.6 0.8 1 23 660 682 660 683 0.96 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF544-217 - 687 6.8e-25 86.5 96.8 1 14 0.15 1.4e+02 2.6 0.7 2 8 270 276 269 278 0.85 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF544-217 - 687 6.8e-25 86.5 96.8 2 14 0.012 12 6.1 1.0 4 12 328 336 327 336 0.90 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF544-217 - 687 6.8e-25 86.5 96.8 3 14 1.4e-05 0.013 15.5 0.8 2 24 352 374 352 377 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF544-217 - 687 6.8e-25 86.5 96.8 4 14 0.00021 0.2 11.7 0.3 2 20 380 398 380 404 0.79 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF544-217 - 687 6.8e-25 86.5 96.8 5 14 0.13 1.2e+02 2.8 0.1 2 12 408 418 408 430 0.85 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF544-217 - 687 6.8e-25 86.5 96.8 6 14 1.6e-06 0.0015 18.5 3.8 2 24 436 458 436 461 0.96 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF544-217 - 687 6.8e-25 86.5 96.8 7 14 4.6e-05 0.043 13.8 1.6 2 24 464 486 464 489 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF544-217 - 687 6.8e-25 86.5 96.8 8 14 0.00031 0.29 11.2 0.7 2 22 492 512 492 516 0.83 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF544-217 - 687 6.8e-25 86.5 96.8 9 14 0.018 17 5.6 0.1 2 12 520 530 520 531 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF544-217 - 687 6.8e-25 86.5 96.8 10 14 0.00013 0.12 12.4 3.0 2 24 548 570 548 573 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF544-217 - 687 6.8e-25 86.5 96.8 11 14 9.1e-05 0.086 12.9 0.2 2 21 576 595 576 599 0.89 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF544-217 - 687 6.8e-25 86.5 96.8 12 14 0.00063 0.6 10.2 1.0 2 24 604 626 604 629 0.88 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF544-217 - 687 6.8e-25 86.5 96.8 13 14 0.0013 1.2 9.2 0.6 2 12 632 642 632 655 0.87 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF544-217 - 687 6.8e-25 86.5 96.8 14 14 3.5e-05 0.033 14.2 0.8 2 24 660 682 660 685 0.95 C2H2-type zinc finger KRAB PF01352.27 42 ZNF544-217 - 687 1.3e-20 72.8 0.7 1 1 2.5e-23 2.4e-20 71.9 0.7 1 42 13 54 13 54 0.98 KRAB box zf-C2H2_jaz PF12171.8 27 ZNF544-217 - 687 3.1e-14 52.8 73.1 1 14 6.6 6.2e+03 -2.3 0.2 14 22 169 177 164 178 0.79 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF544-217 - 687 3.1e-14 52.8 73.1 2 14 1.2 1.1e+03 0.0 0.8 1 11 269 279 269 282 0.83 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF544-217 - 687 3.1e-14 52.8 73.1 3 14 0.0023 2.2 8.7 0.3 2 24 352 374 351 374 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF544-217 - 687 3.1e-14 52.8 73.1 4 14 0.015 14 6.1 0.1 2 21 380 399 379 400 0.84 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF544-217 - 687 3.1e-14 52.8 73.1 5 14 0.06 56 4.2 0.2 4 20 410 426 407 428 0.75 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF544-217 - 687 3.1e-14 52.8 73.1 6 14 0.0001 0.098 13.0 0.9 2 24 436 458 435 458 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF544-217 - 687 3.1e-14 52.8 73.1 7 14 0.0025 2.4 8.6 0.6 2 24 464 486 463 486 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF544-217 - 687 3.1e-14 52.8 73.1 8 14 0.0062 5.8 7.3 0.1 2 22 492 512 491 512 0.91 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF544-217 - 687 3.1e-14 52.8 73.1 9 14 0.14 1.4e+02 3.0 0.1 4 20 522 538 519 540 0.73 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF544-217 - 687 3.1e-14 52.8 73.1 10 14 5.1e-05 0.048 14.0 0.8 2 24 548 570 547 570 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF544-217 - 687 3.1e-14 52.8 73.1 11 14 0.00091 0.86 10.0 0.1 2 21 576 595 575 596 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF544-217 - 687 3.1e-14 52.8 73.1 12 14 0.0017 1.6 9.1 0.8 2 24 604 626 603 626 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF544-217 - 687 3.1e-14 52.8 73.1 13 14 0.01 9.5 6.6 0.1 2 20 632 650 631 651 0.95 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF544-217 - 687 3.1e-14 52.8 73.1 14 14 0.0013 1.2 9.5 0.1 2 24 660 682 659 682 0.93 Zinc-finger double-stranded RNA-binding Zn-ribbon_8 PF09723.10 40 ZNF544-217 - 687 8.6e-10 38.6 74.1 1 14 1.7 1.6e+03 -0.7 2.8 5 14 269 278 269 290 0.84 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF544-217 - 687 8.6e-10 38.6 74.1 2 14 2.8 2.7e+03 -1.4 5.3 28 34 327 333 298 341 0.60 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF544-217 - 687 8.6e-10 38.6 74.1 3 14 0.063 59 3.9 8.1 8 35 328 360 326 364 0.85 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF544-217 - 687 8.6e-10 38.6 74.1 4 14 0.0012 1.1 9.4 4.2 6 36 352 389 350 392 0.84 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF544-217 - 687 8.6e-10 38.6 74.1 5 14 0.00097 0.92 9.7 2.5 6 34 380 415 379 418 0.87 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF544-217 - 687 8.6e-10 38.6 74.1 6 14 0.00023 0.22 11.7 1.6 6 35 408 444 407 449 0.91 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF544-217 - 687 8.6e-10 38.6 74.1 7 14 0.0013 1.3 9.3 4.6 6 35 436 472 435 476 0.82 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF544-217 - 687 8.6e-10 38.6 74.1 8 14 0.00018 0.17 12.0 2.3 6 35 464 500 463 508 0.89 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF544-217 - 687 8.6e-10 38.6 74.1 9 14 0.00011 0.11 12.7 1.9 6 35 492 528 491 530 0.90 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF544-217 - 687 8.6e-10 38.6 74.1 10 14 1.9e-05 0.018 15.2 0.4 6 35 520 556 519 561 0.90 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF544-217 - 687 8.6e-10 38.6 74.1 11 14 4e-05 0.038 14.1 2.2 6 38 576 615 574 617 0.88 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF544-217 - 687 8.6e-10 38.6 74.1 12 14 0.001 0.98 9.6 3.0 6 34 604 639 603 642 0.85 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF544-217 - 687 8.6e-10 38.6 74.1 13 14 0.00024 0.23 11.6 2.9 6 38 632 671 630 673 0.87 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF544-217 - 687 8.6e-10 38.6 74.1 14 14 0.0085 8 6.7 0.5 6 16 660 670 658 678 0.86 Zinc ribbon domain # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF544-217.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF544-217.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF544-217.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF544-217.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF544-217.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:08:34 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF544-218.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF544-218.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF544-218.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF544-218.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF544-218.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:08:34 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF544-219.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF544-219.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF544-219.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF544-219.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF544-219.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:08:35 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- KRAB PF01352.27 42 ZNF544-220 - 106 1.2e-21 76.0 0.7 1 2 1.4e-25 1.2e-21 76.0 0.7 1 42 13 54 13 54 0.98 KRAB box KRAB PF01352.27 42 ZNF544-220 - 106 1.2e-21 76.0 0.7 2 2 0.69 6.2e+03 -3.0 0.0 6 15 61 70 60 73 0.70 KRAB box # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF544-220.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF544-220.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF544-220.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF544-220.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF544-220.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:08:35 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZNF547-201 - 402 2.8e-56 185.6 72.8 1 11 0.089 89 3.8 0.0 2 18 102 118 101 119 0.86 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF547-201 - 402 2.8e-56 185.6 72.8 2 11 0.00034 0.34 11.4 0.9 7 26 148 167 145 167 0.86 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF547-201 - 402 2.8e-56 185.6 72.8 3 11 8.9e-08 8.9e-05 22.8 0.4 2 21 171 190 170 193 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF547-201 - 402 2.8e-56 185.6 72.8 4 11 2.9e-12 2.9e-09 36.9 1.5 2 25 199 222 198 223 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF547-201 - 402 2.8e-56 185.6 72.8 5 11 1.7e-09 1.7e-06 28.2 0.7 1 24 226 249 226 249 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF547-201 - 402 2.8e-56 185.6 72.8 6 11 2e-08 2e-05 24.8 2.7 4 25 257 278 255 279 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF547-201 - 402 2.8e-56 185.6 72.8 7 11 1.9e-07 0.00019 21.7 1.4 1 24 282 305 282 305 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF547-201 - 402 2.8e-56 185.6 72.8 8 11 6e-12 6e-09 35.9 0.7 2 25 311 334 310 334 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF547-201 - 402 2.8e-56 185.6 72.8 9 11 7.3e-12 7.3e-09 35.7 0.1 3 26 340 363 339 363 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF547-201 - 402 2.8e-56 185.6 72.8 10 11 0.039 39 4.9 3.5 5 25 370 388 364 389 0.71 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF547-201 - 402 2.8e-56 185.6 72.8 11 11 0.072 72 4.1 0.4 2 11 393 402 392 402 0.90 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZNF547-201 - 402 1.9e-27 94.1 87.4 1 10 6.8 6.8e+03 -2.1 0.3 14 21 119 126 115 127 0.67 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF547-201 - 402 1.9e-27 94.1 87.4 2 10 5e-06 0.005 17.2 3.8 2 23 157 178 156 178 0.95 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF547-201 - 402 1.9e-27 94.1 87.4 3 10 2.6e-06 0.0026 18.1 1.7 1 23 184 206 184 206 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF547-201 - 402 1.9e-27 94.1 87.4 4 10 0.00011 0.1 13.1 2.9 1 23 212 234 212 234 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF547-201 - 402 1.9e-27 94.1 87.4 5 10 4.5e-05 0.045 14.2 0.3 1 23 240 262 240 262 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF547-201 - 402 1.9e-27 94.1 87.4 6 10 1.3e-05 0.013 15.9 3.4 3 23 270 290 268 290 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF547-201 - 402 1.9e-27 94.1 87.4 7 10 4.5e-06 0.0045 17.4 0.9 3 23 298 318 296 318 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF547-201 - 402 1.9e-27 94.1 87.4 8 10 4.6e-07 0.00046 20.5 0.4 1 23 324 346 324 346 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF547-201 - 402 1.9e-27 94.1 87.4 9 10 0.00019 0.19 12.3 2.7 1 23 352 374 352 374 0.95 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF547-201 - 402 1.9e-27 94.1 87.4 10 10 2.7e-07 0.00027 21.2 1.7 2 23 379 400 378 400 0.97 Zinc finger, C2H2 type KRAB PF01352.27 42 ZNF547-201 - 402 8.6e-23 79.7 0.2 1 1 1.9e-25 1.9e-22 78.6 0.2 2 42 11 51 10 51 0.98 KRAB box zf-C2H2_4 PF13894.6 24 ZNF547-201 - 402 1.5e-20 72.1 81.8 1 10 2.9 2.9e+03 -0.3 0.1 10 21 115 126 112 128 0.80 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF547-201 - 402 1.5e-20 72.1 81.8 2 10 8.1e-05 0.08 13.8 3.4 1 23 156 178 156 179 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF547-201 - 402 1.5e-20 72.1 81.8 3 10 1.8e-05 0.018 15.9 1.0 1 23 184 206 184 207 0.97 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF547-201 - 402 1.5e-20 72.1 81.8 4 10 3e-05 0.03 15.2 2.9 1 23 212 234 212 235 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF547-201 - 402 1.5e-20 72.1 81.8 5 10 0.0018 1.8 9.6 0.4 1 23 240 262 240 263 0.84 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF547-201 - 402 1.5e-20 72.1 81.8 6 10 0.0001 0.1 13.5 3.0 2 23 269 290 268 291 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF547-201 - 402 1.5e-20 72.1 81.8 7 10 8e-05 0.079 13.8 0.9 2 23 297 318 296 319 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF547-201 - 402 1.5e-20 72.1 81.8 8 10 0.0002 0.2 12.6 0.6 1 23 324 346 324 347 0.85 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF547-201 - 402 1.5e-20 72.1 81.8 9 10 0.00015 0.15 13.0 2.9 1 23 352 374 352 375 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF547-201 - 402 1.5e-20 72.1 81.8 10 10 3.6e-05 0.036 14.9 1.6 2 23 379 400 378 401 0.93 C2H2-type zinc finger zf_UBZ PF18439.1 32 ZNF547-201 - 402 6.6e-08 32.0 42.8 1 10 0.043 43 3.8 0.1 1 21 85 106 85 106 0.87 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF547-201 - 402 6.6e-08 32.0 42.8 2 10 0.0003 0.3 10.7 0.4 2 18 155 172 154 175 0.79 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF547-201 - 402 6.6e-08 32.0 42.8 3 10 0.008 8 6.2 0.1 2 12 183 193 182 203 0.78 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF547-201 - 402 6.6e-08 32.0 42.8 4 10 0.03 30 4.3 0.4 3 14 212 223 210 230 0.86 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF547-201 - 402 6.6e-08 32.0 42.8 5 10 0.011 11 5.7 0.1 3 12 240 249 238 259 0.80 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF547-201 - 402 6.6e-08 32.0 42.8 6 10 0.026 25 4.5 0.5 3 14 268 279 267 283 0.83 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF547-201 - 402 6.6e-08 32.0 42.8 7 10 0.013 12 5.5 0.1 2 14 295 307 294 315 0.78 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF547-201 - 402 6.6e-08 32.0 42.8 8 10 0.015 14 5.3 0.1 3 15 324 336 322 343 0.82 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF547-201 - 402 6.6e-08 32.0 42.8 9 10 0.004 4 7.1 0.8 3 15 352 364 350 372 0.79 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF547-201 - 402 6.6e-08 32.0 42.8 10 10 0.025 25 4.5 0.1 4 12 379 387 376 397 0.83 Ubiquitin-Binding Zinc Finger # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF547-201.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF547-201.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF547-201.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF547-201.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF547-201.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:08:35 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF547-202.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF547-202.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF547-202.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF547-202.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF547-202.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:08:37 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF547-203.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF547-203.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF547-203.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF547-203.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF547-203.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:08:37 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF547-204.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF547-204.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF547-204.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF547-204.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF547-204.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:08:37 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZNF548-201 - 545 2.5e-77 252.1 97.8 1 13 1 1.3e+03 0.1 0.1 7 18 157 168 156 169 0.89 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF548-201 - 545 2.5e-77 252.1 97.8 2 13 1.5e-05 0.019 15.3 1.5 8 25 202 219 200 220 0.90 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF548-201 - 545 2.5e-77 252.1 97.8 3 13 4.1e-09 5.3e-06 26.6 2.2 2 26 224 248 223 248 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF548-201 - 545 2.5e-77 252.1 97.8 4 13 6.9e-08 8.8e-05 22.8 1.4 1 24 251 274 251 274 0.97 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF548-201 - 545 2.5e-77 252.1 97.8 5 13 3.9e-11 5e-08 33.0 2.2 2 25 280 303 279 304 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF548-201 - 545 2.5e-77 252.1 97.8 6 13 1.3e-10 1.7e-07 31.4 1.7 2 24 308 330 307 330 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF548-201 - 545 2.5e-77 252.1 97.8 7 13 4.7e-10 6.1e-07 29.6 1.3 2 25 336 359 335 360 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF548-201 - 545 2.5e-77 252.1 97.8 8 13 3.8e-10 4.9e-07 29.9 0.2 2 24 364 386 363 388 0.90 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF548-201 - 545 2.5e-77 252.1 97.8 9 13 1.2e-10 1.5e-07 31.5 1.0 1 25 391 415 391 416 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF548-201 - 545 2.5e-77 252.1 97.8 10 13 9.5e-12 1.2e-08 35.0 0.9 2 25 420 443 419 444 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF548-201 - 545 2.5e-77 252.1 97.8 11 13 1.5e-10 1.9e-07 31.2 0.9 1 26 447 472 447 472 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF548-201 - 545 2.5e-77 252.1 97.8 12 13 1e-09 1.3e-06 28.6 0.2 2 24 476 498 476 500 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF548-201 - 545 2.5e-77 252.1 97.8 13 13 1.2 1.5e+03 -0.1 1.4 1 14 503 516 503 520 0.78 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZNF548-201 - 545 5.2e-52 171.5 100.6 1 11 1.2e-05 0.015 15.7 3.7 1 23 209 231 209 231 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF548-201 - 545 5.2e-52 171.5 100.6 2 11 2.1e-07 0.00027 21.2 2.3 1 23 237 259 237 259 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF548-201 - 545 5.2e-52 171.5 100.6 3 11 7.1e-07 0.00091 19.6 2.4 1 23 265 287 265 287 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF548-201 - 545 5.2e-52 171.5 100.6 4 11 6.3e-08 8e-05 22.9 2.7 1 23 293 315 293 315 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF548-201 - 545 5.2e-52 171.5 100.6 5 11 6e-08 7.7e-05 22.9 0.8 1 23 321 343 321 343 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF548-201 - 545 5.2e-52 171.5 100.6 6 11 1e-08 1.3e-05 25.4 1.5 1 23 349 371 349 371 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF548-201 - 545 5.2e-52 171.5 100.6 7 11 5.8e-07 0.00074 19.8 0.4 1 23 377 399 377 399 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF548-201 - 545 5.2e-52 171.5 100.6 8 11 2.9e-06 0.0037 17.6 6.6 1 23 405 427 405 427 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF548-201 - 545 5.2e-52 171.5 100.6 9 11 1.3e-08 1.7e-05 25.0 1.1 1 23 433 455 433 455 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF548-201 - 545 5.2e-52 171.5 100.6 10 11 8.4e-06 0.011 16.2 1.9 1 23 461 483 461 483 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF548-201 - 545 5.2e-52 171.5 100.6 11 11 5.4e-08 6.9e-05 23.1 3.3 1 23 489 511 489 511 0.98 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZNF548-201 - 545 1.4e-29 100.2 94.6 1 11 8.6e-06 0.011 16.5 3.4 1 23 209 231 209 232 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF548-201 - 545 1.4e-29 100.2 94.6 2 11 0.0015 1.9 9.6 1.7 1 23 237 259 237 260 0.91 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF548-201 - 545 1.4e-29 100.2 94.6 3 11 7.2e-06 0.0092 16.7 1.4 1 23 265 287 265 288 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF548-201 - 545 1.4e-29 100.2 94.6 4 11 0.0008 1 10.4 1.9 1 23 293 315 293 316 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF548-201 - 545 1.4e-29 100.2 94.6 5 11 2.4e-05 0.031 15.1 0.7 1 23 321 343 321 344 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF548-201 - 545 1.4e-29 100.2 94.6 6 11 5.3e-05 0.068 14.0 0.7 1 23 349 371 349 372 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF548-201 - 545 1.4e-29 100.2 94.6 7 11 3.1e-06 0.004 17.9 0.6 1 23 377 399 377 400 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF548-201 - 545 1.4e-29 100.2 94.6 8 11 4.2e-05 0.054 14.3 5.4 1 23 405 427 405 428 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF548-201 - 545 1.4e-29 100.2 94.6 9 11 5.4e-06 0.0069 17.1 1.0 1 23 433 455 433 456 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF548-201 - 545 1.4e-29 100.2 94.6 10 11 0.00036 0.46 11.4 2.2 1 23 461 483 461 484 0.84 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF548-201 - 545 1.4e-29 100.2 94.6 11 11 7.5e-05 0.095 13.6 3.4 1 23 489 511 489 512 0.96 C2H2-type zinc finger KRAB PF01352.27 42 ZNF548-201 - 545 1.6e-22 78.8 0.2 1 1 2.3e-25 3e-22 78.0 0.2 2 42 20 60 19 60 0.98 KRAB box zf-C2H2_6 PF13912.6 27 ZNF548-201 - 545 3.5e-14 52.4 83.1 1 11 0.00081 1 9.4 3.2 2 12 209 219 208 231 0.87 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF548-201 - 545 3.5e-14 52.4 83.1 2 11 0.011 14 5.9 2.1 2 20 237 255 236 262 0.80 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF548-201 - 545 3.5e-14 52.4 83.1 3 11 4.8e-06 0.0061 16.5 1.0 2 24 265 287 264 290 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF548-201 - 545 3.5e-14 52.4 83.1 4 11 0.011 14 5.8 1.7 2 13 293 304 293 304 0.90 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF548-201 - 545 3.5e-14 52.4 83.1 5 11 0.066 84 3.3 0.6 2 11 321 330 321 331 0.89 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF548-201 - 545 3.5e-14 52.4 83.1 6 11 0.0083 11 6.2 0.3 2 22 349 369 349 373 0.87 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF548-201 - 545 3.5e-14 52.4 83.1 7 11 1.3e-05 0.017 15.1 0.5 2 24 377 399 377 402 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF548-201 - 545 3.5e-14 52.4 83.1 8 11 0.00018 0.23 11.5 3.0 2 13 405 416 405 428 0.85 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF548-201 - 545 3.5e-14 52.4 83.1 9 11 5.1e-06 0.0065 16.4 0.8 2 24 433 455 433 458 0.95 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF548-201 - 545 3.5e-14 52.4 83.1 10 11 0.0066 8.5 6.5 0.9 2 12 461 471 461 472 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF548-201 - 545 3.5e-14 52.4 83.1 11 11 0.0076 9.7 6.3 0.7 2 11 489 498 489 499 0.95 C2H2-type zinc finger Zn-ribbon_8 PF09723.10 40 ZNF548-201 - 545 6.8e-10 38.9 60.8 1 8 0.00013 0.16 12.1 7.8 5 34 208 244 208 247 0.93 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF548-201 - 545 6.8e-10 38.9 60.8 2 8 0.00071 0.91 9.7 6.2 6 34 237 272 236 275 0.91 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF548-201 - 545 6.8e-10 38.9 60.8 3 8 0.0072 9.2 6.5 6.3 6 34 265 300 264 300 0.81 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF548-201 - 545 6.8e-10 38.9 60.8 4 8 0.0027 3.5 7.8 5.3 6 34 293 328 292 331 0.91 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF548-201 - 545 6.8e-10 38.9 60.8 5 8 0.038 49 4.2 0.9 6 15 321 330 320 335 0.86 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF548-201 - 545 6.8e-10 38.9 60.8 6 8 4.3e-05 0.055 13.6 0.9 6 34 349 384 348 388 0.91 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF548-201 - 545 6.8e-10 38.9 60.8 7 8 0.00027 0.34 11.0 5.2 6 34 405 440 404 444 0.92 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF548-201 - 545 6.8e-10 38.9 60.8 8 8 2.5e-05 0.032 14.4 3.0 6 35 461 497 460 518 0.92 Zinc ribbon domain C1_1 PF00130.22 53 ZNF548-201 - 545 7.1e-08 32.2 45.5 1 9 0.13 1.6e+02 2.3 5.4 10 35 207 243 200 246 0.80 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF548-201 - 545 7.1e-08 32.2 45.5 2 9 0.0036 4.6 7.2 2.7 9 36 234 272 227 274 0.82 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF548-201 - 545 7.1e-08 32.2 45.5 3 9 0.0078 10 6.1 2.2 1 35 255 299 251 302 0.82 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF548-201 - 545 7.1e-08 32.2 45.5 4 9 0.0019 2.5 8.1 1.9 4 35 286 327 282 330 0.80 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF548-201 - 545 7.1e-08 32.2 45.5 5 9 0.00093 1.2 9.1 0.5 2 35 312 355 307 355 0.83 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF548-201 - 545 7.1e-08 32.2 45.5 6 9 6.9e-05 0.089 12.7 0.3 1 37 339 385 339 389 0.84 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF548-201 - 545 7.1e-08 32.2 45.5 7 9 0.00038 0.48 10.3 4.2 2 35 395 439 394 442 0.90 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF548-201 - 545 7.1e-08 32.2 45.5 8 9 0.00023 0.3 11.0 0.9 2 38 424 470 423 473 0.81 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF548-201 - 545 7.1e-08 32.2 45.5 9 9 0.00033 0.42 10.5 1.4 2 37 451 497 450 515 0.89 Phorbol esters/diacylglycerol binding domain (C1 domain) # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF548-201.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF548-201.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF548-201.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF548-201.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF548-201.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:08:38 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZNF548-202 - 533 1.8e-77 252.6 97.8 1 14 9.9 1.3e+04 -3.0 0.2 2 15 99 112 99 115 0.71 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF548-202 - 533 1.8e-77 252.6 97.8 2 14 1 1.3e+03 0.1 0.1 7 18 145 156 144 157 0.89 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF548-202 - 533 1.8e-77 252.6 97.8 3 14 1.5e-05 0.019 15.4 1.5 8 25 190 207 188 208 0.90 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF548-202 - 533 1.8e-77 252.6 97.8 4 14 4e-09 5.1e-06 26.7 2.2 2 26 212 236 211 236 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF548-202 - 533 1.8e-77 252.6 97.8 5 14 6.7e-08 8.6e-05 22.8 1.4 1 24 239 262 239 262 0.97 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF548-202 - 533 1.8e-77 252.6 97.8 6 14 3.8e-11 4.9e-08 33.1 2.2 2 25 268 291 267 292 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF548-202 - 533 1.8e-77 252.6 97.8 7 14 1.3e-10 1.6e-07 31.4 1.7 2 24 296 318 295 318 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF548-202 - 533 1.8e-77 252.6 97.8 8 14 4.6e-10 5.9e-07 29.6 1.3 2 25 324 347 323 348 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF548-202 - 533 1.8e-77 252.6 97.8 9 14 3.7e-10 4.8e-07 29.9 0.2 2 24 352 374 351 376 0.90 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF548-202 - 533 1.8e-77 252.6 97.8 10 14 1.2e-10 1.5e-07 31.5 1.0 1 25 379 403 379 404 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF548-202 - 533 1.8e-77 252.6 97.8 11 14 9.3e-12 1.2e-08 35.0 0.9 2 25 408 431 407 432 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF548-202 - 533 1.8e-77 252.6 97.8 12 14 1.5e-10 1.9e-07 31.2 0.9 1 26 435 460 435 460 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF548-202 - 533 1.8e-77 252.6 97.8 13 14 9.8e-10 1.3e-06 28.6 0.2 2 24 464 486 464 488 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF548-202 - 533 1.8e-77 252.6 97.8 14 14 1.2 1.5e+03 -0.1 1.4 1 14 491 504 491 508 0.78 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZNF548-202 - 533 3.8e-52 171.9 100.6 1 11 1.1e-05 0.015 15.8 3.7 1 23 197 219 197 219 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF548-202 - 533 3.8e-52 171.9 100.6 2 11 2.1e-07 0.00026 21.2 2.3 1 23 225 247 225 247 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF548-202 - 533 3.8e-52 171.9 100.6 3 11 6.9e-07 0.00088 19.6 2.4 1 23 253 275 253 275 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF548-202 - 533 3.8e-52 171.9 100.6 4 11 6.1e-08 7.8e-05 22.9 2.7 1 23 281 303 281 303 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF548-202 - 533 3.8e-52 171.9 100.6 5 11 5.8e-08 7.5e-05 23.0 0.8 1 23 309 331 309 331 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF548-202 - 533 3.8e-52 171.9 100.6 6 11 9.9e-09 1.3e-05 25.4 1.5 1 23 337 359 337 359 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF548-202 - 533 3.8e-52 171.9 100.6 7 11 5.7e-07 0.00072 19.9 0.4 1 23 365 387 365 387 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF548-202 - 533 3.8e-52 171.9 100.6 8 11 2.8e-06 0.0036 17.7 6.6 1 23 393 415 393 415 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF548-202 - 533 3.8e-52 171.9 100.6 9 11 1.3e-08 1.7e-05 25.0 1.1 1 23 421 443 421 443 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF548-202 - 533 3.8e-52 171.9 100.6 10 11 8.2e-06 0.01 16.2 1.9 1 23 449 471 449 471 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF548-202 - 533 3.8e-52 171.9 100.6 11 11 5.3e-08 6.7e-05 23.1 3.3 1 23 477 499 477 499 0.98 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZNF548-202 - 533 1e-29 100.6 94.6 1 11 8.4e-06 0.011 16.5 3.4 1 23 197 219 197 220 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF548-202 - 533 1e-29 100.6 94.6 2 11 0.0014 1.8 9.6 1.7 1 23 225 247 225 248 0.91 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF548-202 - 533 1e-29 100.6 94.6 3 11 7e-06 0.0089 16.8 1.4 1 23 253 275 253 276 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF548-202 - 533 1e-29 100.6 94.6 4 11 0.00077 0.99 10.4 1.9 1 23 281 303 281 304 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF548-202 - 533 1e-29 100.6 94.6 5 11 2.3e-05 0.03 15.2 0.7 1 23 309 331 309 332 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF548-202 - 533 1e-29 100.6 94.6 6 11 5.2e-05 0.066 14.1 0.7 1 23 337 359 337 360 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF548-202 - 533 1e-29 100.6 94.6 7 11 3e-06 0.0039 17.9 0.6 1 23 365 387 365 388 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF548-202 - 533 1e-29 100.6 94.6 8 11 4.1e-05 0.053 14.4 5.4 1 23 393 415 393 416 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF548-202 - 533 1e-29 100.6 94.6 9 11 5.3e-06 0.0067 17.2 1.0 1 23 421 443 421 444 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF548-202 - 533 1e-29 100.6 94.6 10 11 0.00035 0.45 11.5 2.2 1 23 449 471 449 472 0.84 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF548-202 - 533 1e-29 100.6 94.6 11 11 7.3e-05 0.093 13.6 3.4 1 23 477 499 477 500 0.96 C2H2-type zinc finger KRAB PF01352.27 42 ZNF548-202 - 533 1.6e-22 78.8 0.2 1 1 2.3e-25 2.9e-22 78.0 0.2 2 42 8 48 7 48 0.98 KRAB box zf-C2H2_6 PF13912.6 27 ZNF548-202 - 533 2.6e-14 52.8 83.1 1 11 0.00079 1 9.5 3.2 2 12 197 207 196 219 0.87 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF548-202 - 533 2.6e-14 52.8 83.1 2 11 0.01 13 5.9 2.1 2 20 225 243 224 250 0.80 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF548-202 - 533 2.6e-14 52.8 83.1 3 11 4.6e-06 0.0059 16.6 1.0 2 24 253 275 252 278 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF548-202 - 533 2.6e-14 52.8 83.1 4 11 0.011 14 5.8 1.7 2 13 281 292 281 292 0.90 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF548-202 - 533 2.6e-14 52.8 83.1 5 11 0.064 82 3.4 0.6 2 11 309 318 309 319 0.89 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF548-202 - 533 2.6e-14 52.8 83.1 6 11 0.0081 10 6.2 0.3 2 22 337 357 337 361 0.87 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF548-202 - 533 2.6e-14 52.8 83.1 7 11 1.3e-05 0.016 15.2 0.5 2 24 365 387 365 390 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF548-202 - 533 2.6e-14 52.8 83.1 8 11 0.00018 0.23 11.5 3.0 2 13 393 404 393 416 0.85 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF548-202 - 533 2.6e-14 52.8 83.1 9 11 5e-06 0.0063 16.5 0.8 2 24 421 443 421 446 0.95 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF548-202 - 533 2.6e-14 52.8 83.1 10 11 0.0064 8.3 6.5 0.9 2 12 449 459 449 460 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF548-202 - 533 2.6e-14 52.8 83.1 11 11 0.0074 9.5 6.4 0.7 2 11 477 486 477 487 0.95 C2H2-type zinc finger Zn-ribbon_8 PF09723.10 40 ZNF548-202 - 533 2e-09 37.4 62.5 1 8 0.00014 0.18 11.9 7.9 5 34 196 232 196 234 0.93 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF548-202 - 533 2e-09 37.4 62.5 2 8 0.00087 1.1 9.4 6.6 6 34 225 260 224 263 0.91 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF548-202 - 533 2e-09 37.4 62.5 3 8 0.0075 9.6 6.4 6.4 6 34 253 288 252 288 0.81 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF548-202 - 533 2e-09 37.4 62.5 4 8 0.0029 3.7 7.8 5.4 6 34 281 316 280 320 0.91 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF548-202 - 533 2e-09 37.4 62.5 5 8 0.037 47 4.2 0.9 6 15 309 318 308 324 0.86 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF548-202 - 533 2e-09 37.4 62.5 6 8 4.2e-05 0.054 13.6 0.9 6 34 337 372 336 376 0.91 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF548-202 - 533 2e-09 37.4 62.5 7 8 0.00065 0.83 9.8 6.5 6 34 393 428 392 432 0.92 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF548-202 - 533 2e-09 37.4 62.5 8 8 2.4e-05 0.031 14.4 3.0 6 35 449 485 448 506 0.92 Zinc ribbon domain C1_1 PF00130.22 53 ZNF548-202 - 533 4.6e-08 32.8 45.3 1 10 0.1 1.3e+02 2.6 5.2 10 35 195 231 188 234 0.80 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF548-202 - 533 4.6e-08 32.8 45.3 2 10 0.0025 3.2 7.7 2.3 9 36 222 260 212 262 0.83 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF548-202 - 533 4.6e-08 32.8 45.3 3 10 0.04 51 3.9 0.2 1 21 243 262 240 277 0.79 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF548-202 - 533 4.6e-08 32.8 45.3 4 10 0.0021 2.7 7.9 2.1 4 35 274 315 270 318 0.80 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF548-202 - 533 4.6e-08 32.8 45.3 5 10 0.00094 1.2 9.1 0.6 2 35 300 343 295 343 0.83 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF548-202 - 533 4.6e-08 32.8 45.3 6 10 6.8e-05 0.087 12.7 0.3 1 37 327 373 327 377 0.84 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF548-202 - 533 4.6e-08 32.8 45.3 7 10 0.00038 0.49 10.3 4.2 2 35 383 427 382 430 0.90 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF548-202 - 533 4.6e-08 32.8 45.3 8 10 0.00023 0.3 11.0 0.9 2 38 412 458 411 461 0.81 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF548-202 - 533 4.6e-08 32.8 45.3 9 10 0.00029 0.37 10.7 1.1 2 37 439 485 438 489 0.88 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF548-202 - 533 4.6e-08 32.8 45.3 10 10 0.075 96 3.0 0.2 9 21 474 486 467 508 0.71 Phorbol esters/diacylglycerol binding domain (C1 domain) # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF548-202.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF548-202.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF548-202.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF548-202.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF548-202.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:08:38 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF548-203.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF548-203.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF548-203.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF548-203.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF548-203.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:08:39 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF548-204.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF548-204.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF548-204.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF548-204.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF548-204.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:08:39 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF548-205.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF548-205.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF548-205.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF548-205.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF548-205.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:08:39 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF548-206.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF548-206.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF548-206.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF548-206.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF548-206.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:08:40 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- KRAB PF01352.27 42 ZNF548-207 - 63 3.6e-24 84.1 0.2 1 1 3e-28 5.5e-24 83.6 0.2 2 42 20 60 19 60 0.98 KRAB box # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF548-207.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF548-207.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF548-207.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF548-207.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF548-207.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:08:40 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF548-208.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF548-208.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF548-208.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF548-208.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF548-208.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:08:40 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- KRAB PF01352.27 42 ZNF548-209 - 87 8.6e-24 82.9 0.2 1 1 7.3e-28 1.3e-23 82.3 0.2 2 42 20 60 19 60 0.98 KRAB box # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF548-209.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF548-209.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF548-209.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF548-209.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF548-209.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:08:41 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF548-210.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF548-210.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF548-210.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF548-210.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF548-210.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:08:41 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF548-211.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF548-211.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF548-211.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF548-211.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF548-211.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:08:41 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF548-212.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF548-212.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF548-212.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF548-212.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF548-212.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:08:42 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZNF549-201 - 627 1.9e-86 280.9 101.1 1 16 1.9 2.8e+03 -1.0 0.2 5 18 198 212 184 213 0.68 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF549-201 - 627 1.9e-86 280.9 101.1 2 16 0.0017 2.6 8.6 0.8 3 16 222 235 220 235 0.86 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF549-201 - 627 1.9e-86 280.9 101.1 3 16 6.9e-08 0.0001 22.5 1.1 3 26 250 273 249 273 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF549-201 - 627 1.9e-86 280.9 101.1 4 16 4.3e-05 0.064 13.7 0.0 5 23 280 299 277 302 0.82 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF549-201 - 627 1.9e-86 280.9 101.1 5 16 2.7e-10 4e-07 30.2 1.0 1 26 305 330 305 330 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF549-201 - 627 1.9e-86 280.9 101.1 6 16 7.4e-09 1.1e-05 25.6 0.4 5 26 337 359 334 359 0.86 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF549-201 - 627 1.9e-86 280.9 101.1 7 16 9.9e-10 1.5e-06 28.4 0.2 4 24 365 385 363 387 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF549-201 - 627 1.9e-86 280.9 101.1 8 16 4.1e-10 6.2e-07 29.6 1.4 2 26 391 415 390 415 0.90 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF549-201 - 627 1.9e-86 280.9 101.1 9 16 5.7e-10 8.5e-07 29.1 0.1 3 24 420 441 418 443 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF549-201 - 627 1.9e-86 280.9 101.1 10 16 6e-11 8.9e-08 32.2 0.1 1 25 446 470 446 471 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF549-201 - 627 1.9e-86 280.9 101.1 11 16 9.3e-08 0.00014 22.1 2.9 2 24 475 497 474 498 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF549-201 - 627 1.9e-86 280.9 101.1 12 16 2.1e-05 0.031 14.7 1.7 2 26 503 527 502 527 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF549-201 - 627 1.9e-86 280.9 101.1 13 16 3.4e-07 0.00051 20.4 5.9 3 26 532 555 530 555 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF549-201 - 627 1.9e-86 280.9 101.1 14 16 2.7e-09 4e-06 27.0 0.1 2 24 559 581 558 583 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF549-201 - 627 1.9e-86 280.9 101.1 15 16 1.2e-11 1.8e-08 34.4 0.6 2 25 587 610 586 611 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF549-201 - 627 1.9e-86 280.9 101.1 16 16 0.1 1.5e+02 3.1 0.1 1 10 614 623 614 627 0.82 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZNF549-201 - 627 2.1e-58 191.6 117.7 1 17 1.4 2.1e+03 -0.5 0.0 11 21 129 139 126 140 0.81 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF549-201 - 627 2.1e-58 191.6 117.7 2 17 1.7 2.6e+03 -0.8 0.0 8 23 176 191 171 191 0.82 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF549-201 - 627 2.1e-58 191.6 117.7 3 17 0.006 9 7.0 0.3 5 23 210 228 209 228 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF549-201 - 627 2.1e-58 191.6 117.7 4 17 0.0061 9.1 7.0 0.2 7 23 240 256 240 256 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF549-201 - 627 2.1e-58 191.6 117.7 5 17 7.3e-06 0.011 16.2 0.8 1 23 262 285 262 285 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF549-201 - 627 2.1e-58 191.6 117.7 6 17 8.4e-07 0.0013 19.1 0.4 1 23 291 313 291 313 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF549-201 - 627 2.1e-58 191.6 117.7 7 17 5.3e-07 0.00079 19.7 1.9 1 23 319 342 319 342 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF549-201 - 627 2.1e-58 191.6 117.7 8 17 1.9e-07 0.00029 21.1 1.8 1 23 348 370 348 370 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF549-201 - 627 2.1e-58 191.6 117.7 9 17 3.4e-07 0.00051 20.3 1.9 1 23 376 398 376 398 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF549-201 - 627 2.1e-58 191.6 117.7 10 17 5.9e-07 0.00089 19.6 1.2 1 23 404 426 404 426 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF549-201 - 627 2.1e-58 191.6 117.7 11 17 3.6e-08 5.3e-05 23.4 0.5 1 23 432 454 432 454 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF549-201 - 627 2.1e-58 191.6 117.7 12 17 2.1e-07 0.00032 21.0 1.3 1 23 460 482 460 482 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF549-201 - 627 2.1e-58 191.6 117.7 13 17 2.5e-05 0.037 14.5 0.2 1 23 488 510 488 510 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF549-201 - 627 2.1e-58 191.6 117.7 14 17 3.3e-06 0.005 17.2 3.3 2 23 517 538 516 538 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF549-201 - 627 2.1e-58 191.6 117.7 15 17 7.7e-06 0.011 16.1 6.9 2 23 545 566 544 566 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF549-201 - 627 2.1e-58 191.6 117.7 16 17 1.6e-05 0.024 15.1 0.3 1 23 572 594 572 594 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF549-201 - 627 2.1e-58 191.6 117.7 17 17 8.8e-09 1.3e-05 25.4 0.8 1 23 600 622 600 622 0.98 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZNF549-201 - 627 1e-31 106.8 118.6 1 18 6.4 9.6e+03 -2.0 0.1 2 17 92 107 91 111 0.62 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF549-201 - 627 1e-31 106.8 118.6 2 18 1.7 2.5e+03 -0.2 0.0 7 21 125 139 125 141 0.81 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF549-201 - 627 1e-31 106.8 118.6 3 18 0.0058 8.6 7.5 0.0 1 23 169 191 169 192 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF549-201 - 627 1e-31 106.8 118.6 4 18 0.21 3.2e+02 2.6 0.4 6 23 211 228 209 229 0.90 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF549-201 - 627 1e-31 106.8 118.6 5 18 0.95 1.4e+03 0.6 0.1 7 23 240 256 240 257 0.86 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF549-201 - 627 1e-31 106.8 118.6 6 18 5.4e-05 0.081 13.8 0.8 1 24 262 285 262 285 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF549-201 - 627 1e-31 106.8 118.6 7 18 8.7e-06 0.013 16.3 0.4 1 23 291 313 291 314 0.97 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF549-201 - 627 1e-31 106.8 118.6 8 18 0.00019 0.28 12.1 1.6 1 24 319 342 319 342 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF549-201 - 627 1e-31 106.8 118.6 9 18 0.0044 6.5 7.9 1.2 1 23 348 370 348 371 0.84 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF549-201 - 627 1e-31 106.8 118.6 10 18 8.2e-06 0.012 16.4 1.5 1 23 376 398 376 399 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF549-201 - 627 1e-31 106.8 118.6 11 18 0.00013 0.19 12.6 1.1 1 23 404 426 404 427 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF549-201 - 627 1e-31 106.8 118.6 12 18 1.4e-05 0.021 15.6 0.3 1 23 432 454 432 455 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF549-201 - 627 1e-31 106.8 118.6 13 18 3.4e-06 0.0051 17.5 1.1 1 23 460 482 460 483 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF549-201 - 627 1e-31 106.8 118.6 14 18 0.00034 0.5 11.3 0.3 1 23 488 510 488 511 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF549-201 - 627 1e-31 106.8 118.6 15 18 0.00022 0.33 11.9 3.5 2 23 517 538 516 539 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF549-201 - 627 1e-31 106.8 118.6 16 18 0.0041 6.1 8.0 6.8 2 23 545 566 544 567 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF549-201 - 627 1e-31 106.8 118.6 17 18 0.001 1.5 9.8 0.3 1 23 572 594 572 595 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF549-201 - 627 1e-31 106.8 118.6 18 18 1.5e-05 0.023 15.5 0.5 1 23 600 622 600 623 0.96 C2H2-type zinc finger KRAB PF01352.27 42 ZNF549-201 - 627 1.9e-23 81.8 0.2 1 1 2.3e-26 3.5e-23 81.0 0.2 2 42 14 54 13 54 0.98 KRAB box zf-C2H2_6 PF13912.6 27 ZNF549-201 - 627 1.1e-15 57.2 93.8 1 14 3.2 4.8e+03 -2.3 0.0 9 26 176 193 175 194 0.80 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF549-201 - 627 1.1e-15 57.2 93.8 2 14 0.00073 1.1 9.3 0.4 2 12 262 272 262 287 0.78 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF549-201 - 627 1.1e-15 57.2 93.8 3 14 4.7e-06 0.007 16.3 0.7 2 24 291 313 290 316 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF549-201 - 627 1.1e-15 57.2 93.8 4 14 0.00046 0.69 10.0 0.8 2 12 319 329 319 337 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF549-201 - 627 1.1e-15 57.2 93.8 5 14 0.0094 14 5.8 0.3 2 11 348 357 348 362 0.92 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF549-201 - 627 1.1e-15 57.2 93.8 6 14 3.2e-05 0.048 13.7 1.2 1 21 375 395 375 400 0.85 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF549-201 - 627 1.1e-15 57.2 93.8 7 14 0.0011 1.6 8.8 0.6 2 11 404 413 404 414 0.96 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF549-201 - 627 1.1e-15 57.2 93.8 8 14 0.028 42 4.3 0.2 2 11 432 441 432 442 0.95 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF549-201 - 627 1.1e-15 57.2 93.8 9 14 0.00082 1.2 9.2 1.2 1 24 459 482 459 485 0.88 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF549-201 - 627 1.1e-15 57.2 93.8 10 14 0.0016 2.4 8.2 0.5 2 11 488 497 488 499 0.95 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF549-201 - 627 1.1e-15 57.2 93.8 11 14 5.5e-05 0.083 12.9 1.9 3 24 517 538 517 541 0.92 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF549-201 - 627 1.1e-15 57.2 93.8 12 14 0.0062 9.2 6.4 4.4 3 25 545 567 545 569 0.91 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF549-201 - 627 1.1e-15 57.2 93.8 13 14 0.075 1.1e+02 2.9 0.4 2 12 572 582 572 595 0.78 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF549-201 - 627 1.1e-15 57.2 93.8 14 14 0.0017 2.5 8.2 1.0 2 24 600 622 600 623 0.91 C2H2-type zinc finger zf-C2H2_jaz PF12171.8 27 ZNF549-201 - 627 4.1e-10 39.7 79.4 1 15 3.2 4.8e+03 -2.0 0.3 11 22 128 139 126 146 0.74 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF549-201 - 627 4.1e-10 39.7 79.4 2 15 1.3 1.9e+03 -0.7 0.2 9 24 241 256 240 257 0.84 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF549-201 - 627 4.1e-10 39.7 79.4 3 15 0.0046 6.9 7.1 0.1 2 21 262 281 261 282 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF549-201 - 627 4.1e-10 39.7 79.4 4 15 0.00016 0.24 11.8 0.6 2 24 291 313 290 314 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF549-201 - 627 4.1e-10 39.7 79.4 5 15 0.0016 2.4 8.6 0.2 2 21 319 338 318 339 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF549-201 - 627 4.1e-10 39.7 79.4 6 15 0.019 28 5.1 0.1 2 21 348 367 347 368 0.86 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF549-201 - 627 4.1e-10 39.7 79.4 7 15 0.15 2.3e+02 2.2 0.4 4 20 378 394 376 394 0.86 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF549-201 - 627 4.1e-10 39.7 79.4 8 15 0.00089 1.3 9.4 0.3 2 22 404 424 403 424 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF549-201 - 627 4.1e-10 39.7 79.4 9 15 2.6e-05 0.039 14.3 0.0 2 22 432 452 431 452 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF549-201 - 627 4.1e-10 39.7 79.4 10 15 0.0013 2 8.8 0.6 2 20 460 478 459 480 0.95 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF549-201 - 627 4.1e-10 39.7 79.4 11 15 0.07 1.1e+02 3.3 0.1 2 20 488 506 487 508 0.78 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF549-201 - 627 4.1e-10 39.7 79.4 12 15 0.006 9 6.7 1.1 4 22 518 536 517 536 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF549-201 - 627 4.1e-10 39.7 79.4 13 15 0.73 1.1e+03 0.1 1.9 4 22 546 564 545 564 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF549-201 - 627 4.1e-10 39.7 79.4 14 15 0.0015 2.2 8.7 0.6 2 22 572 592 571 592 0.91 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF549-201 - 627 4.1e-10 39.7 79.4 15 15 0.025 38 4.7 0.1 2 22 600 620 599 620 0.89 Zinc-finger double-stranded RNA-binding Zn-ribbon_8 PF09723.10 40 ZNF549-201 - 627 5.8e-08 32.7 64.2 1 10 5.7 8.6e+03 -3.0 0.1 6 16 209 216 208 224 0.67 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF549-201 - 627 5.8e-08 32.7 64.2 2 10 0.00079 1.2 9.3 0.1 6 36 262 300 261 304 0.85 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF549-201 - 627 5.8e-08 32.7 64.2 3 10 0.0003 0.44 10.7 1.3 6 34 319 355 318 358 0.91 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF549-201 - 627 5.8e-08 32.7 64.2 4 10 0.0069 10 6.3 4.0 6 34 348 383 347 386 0.85 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF549-201 - 627 5.8e-08 32.7 64.2 5 10 0.0099 15 5.8 0.7 6 15 376 385 375 397 0.84 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF549-201 - 627 5.8e-08 32.7 64.2 6 10 0.00012 0.18 11.9 0.8 6 34 404 439 403 444 0.90 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF549-201 - 627 5.8e-08 32.7 64.2 7 10 0.00043 0.64 10.2 4.4 6 34 460 495 459 497 0.90 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF549-201 - 627 5.8e-08 32.7 64.2 8 10 0.00098 1.5 9.0 6.1 6 34 488 523 487 523 0.87 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF549-201 - 627 5.8e-08 32.7 64.2 9 10 0.0073 11 6.2 9.7 7 34 517 551 516 557 0.92 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF549-201 - 627 5.8e-08 32.7 64.2 10 10 0.00073 1.1 9.4 2.6 6 38 572 611 571 613 0.89 Zinc ribbon domain # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF549-201.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF549-201.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF549-201.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF549-201.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF549-201.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:08:42 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZNF549-202 - 640 2.8e-86 280.4 101.1 1 16 1.9 2.9e+03 -1.0 0.2 5 18 211 225 197 226 0.68 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF549-202 - 640 2.8e-86 280.4 101.1 2 16 0.0018 2.6 8.6 0.8 3 16 235 248 233 248 0.86 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF549-202 - 640 2.8e-86 280.4 101.1 3 16 7e-08 0.00011 22.5 1.1 3 26 263 286 262 286 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF549-202 - 640 2.8e-86 280.4 101.1 4 16 4.4e-05 0.066 13.7 0.0 5 23 293 312 290 315 0.82 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF549-202 - 640 2.8e-86 280.4 101.1 5 16 2.7e-10 4.1e-07 30.1 1.0 1 26 318 343 318 343 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF549-202 - 640 2.8e-86 280.4 101.1 6 16 7.6e-09 1.1e-05 25.6 0.4 5 26 350 372 347 372 0.86 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF549-202 - 640 2.8e-86 280.4 101.1 7 16 1e-09 1.5e-06 28.3 0.2 4 24 378 398 376 400 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF549-202 - 640 2.8e-86 280.4 101.1 8 16 4.2e-10 6.3e-07 29.5 1.4 2 26 404 428 403 428 0.90 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF549-202 - 640 2.8e-86 280.4 101.1 9 16 5.8e-10 8.7e-07 29.1 0.1 3 24 433 454 431 456 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF549-202 - 640 2.8e-86 280.4 101.1 10 16 6.1e-11 9.1e-08 32.2 0.1 1 25 459 483 459 484 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF549-202 - 640 2.8e-86 280.4 101.1 11 16 9.5e-08 0.00014 22.1 2.9 2 24 488 510 487 511 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF549-202 - 640 2.8e-86 280.4 101.1 12 16 2.1e-05 0.031 14.7 1.7 2 26 516 540 515 540 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF549-202 - 640 2.8e-86 280.4 101.1 13 16 3.5e-07 0.00052 20.3 5.9 3 26 545 568 543 568 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF549-202 - 640 2.8e-86 280.4 101.1 14 16 2.7e-09 4.1e-06 27.0 0.1 2 24 572 594 571 596 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF549-202 - 640 2.8e-86 280.4 101.1 15 16 1.2e-11 1.8e-08 34.4 0.6 2 25 600 623 599 624 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF549-202 - 640 2.8e-86 280.4 101.1 16 16 0.1 1.5e+02 3.0 0.1 1 10 627 636 627 640 0.82 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZNF549-202 - 640 3.1e-58 191.1 117.7 1 17 1.5 2.2e+03 -0.5 0.0 11 21 142 152 139 153 0.81 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF549-202 - 640 3.1e-58 191.1 117.7 2 17 1.8 2.6e+03 -0.8 0.0 8 23 189 204 184 204 0.82 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF549-202 - 640 3.1e-58 191.1 117.7 3 17 0.0061 9.2 6.9 0.3 5 23 223 241 222 241 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF549-202 - 640 3.1e-58 191.1 117.7 4 17 0.0062 9.3 6.9 0.2 7 23 253 269 253 269 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF549-202 - 640 3.1e-58 191.1 117.7 5 17 7.5e-06 0.011 16.1 0.8 1 23 275 298 275 298 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF549-202 - 640 3.1e-58 191.1 117.7 6 17 8.6e-07 0.0013 19.1 0.4 1 23 304 326 304 326 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF549-202 - 640 3.1e-58 191.1 117.7 7 17 5.4e-07 0.00081 19.7 1.9 1 23 332 355 332 355 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF549-202 - 640 3.1e-58 191.1 117.7 8 17 2e-07 0.00029 21.1 1.8 1 23 361 383 361 383 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF549-202 - 640 3.1e-58 191.1 117.7 9 17 3.5e-07 0.00053 20.3 1.9 1 23 389 411 389 411 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF549-202 - 640 3.1e-58 191.1 117.7 10 17 6.1e-07 0.00091 19.6 1.2 1 23 417 439 417 439 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF549-202 - 640 3.1e-58 191.1 117.7 11 17 3.7e-08 5.5e-05 23.4 0.5 1 23 445 467 445 467 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF549-202 - 640 3.1e-58 191.1 117.7 12 17 2.2e-07 0.00033 21.0 1.3 1 23 473 495 473 495 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF549-202 - 640 3.1e-58 191.1 117.7 13 17 2.6e-05 0.038 14.4 0.2 1 23 501 523 501 523 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF549-202 - 640 3.1e-58 191.1 117.7 14 17 3.4e-06 0.0051 17.2 3.3 2 23 530 551 529 551 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF549-202 - 640 3.1e-58 191.1 117.7 15 17 7.9e-06 0.012 16.1 6.9 2 23 558 579 557 579 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF549-202 - 640 3.1e-58 191.1 117.7 16 17 1.6e-05 0.024 15.1 0.3 1 23 585 607 585 607 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF549-202 - 640 3.1e-58 191.1 117.7 17 17 9e-09 1.3e-05 25.3 0.8 1 23 613 635 613 635 0.98 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZNF549-202 - 640 1.6e-31 106.3 118.6 1 18 6.6 9.8e+03 -2.0 0.1 2 17 105 120 104 124 0.62 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF549-202 - 640 1.6e-31 106.3 118.6 2 18 1.7 2.6e+03 -0.2 0.0 7 21 138 152 138 154 0.81 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF549-202 - 640 1.6e-31 106.3 118.6 3 18 0.0059 8.8 7.5 0.0 1 23 182 204 182 205 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF549-202 - 640 1.6e-31 106.3 118.6 4 18 0.22 3.3e+02 2.6 0.4 6 23 224 241 222 242 0.90 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF549-202 - 640 1.6e-31 106.3 118.6 5 18 0.98 1.5e+03 0.6 0.1 7 23 253 269 253 270 0.86 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF549-202 - 640 1.6e-31 106.3 118.6 6 18 5.6e-05 0.083 13.8 0.8 1 24 275 298 275 298 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF549-202 - 640 1.6e-31 106.3 118.6 7 18 8.9e-06 0.013 16.3 0.4 1 23 304 326 304 327 0.97 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF549-202 - 640 1.6e-31 106.3 118.6 8 18 0.00019 0.28 12.1 1.6 1 24 332 355 332 355 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF549-202 - 640 1.6e-31 106.3 118.6 9 18 0.0045 6.7 7.8 1.2 1 23 361 383 361 384 0.84 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF549-202 - 640 1.6e-31 106.3 118.6 10 18 8.4e-06 0.013 16.3 1.5 1 23 389 411 389 412 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF549-202 - 640 1.6e-31 106.3 118.6 11 18 0.00013 0.2 12.6 1.1 1 23 417 439 417 440 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF549-202 - 640 1.6e-31 106.3 118.6 12 18 1.4e-05 0.021 15.6 0.3 1 23 445 467 445 468 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF549-202 - 640 1.6e-31 106.3 118.6 13 18 3.5e-06 0.0053 17.5 1.1 1 23 473 495 473 496 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF549-202 - 640 1.6e-31 106.3 118.6 14 18 0.00034 0.51 11.3 0.3 1 23 501 523 501 524 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF549-202 - 640 1.6e-31 106.3 118.6 15 18 0.00022 0.33 11.9 3.5 2 23 530 551 529 552 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF549-202 - 640 1.6e-31 106.3 118.6 16 18 0.0042 6.3 7.9 6.8 2 23 558 579 557 580 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF549-202 - 640 1.6e-31 106.3 118.6 17 18 0.0011 1.6 9.8 0.3 1 23 585 607 585 608 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF549-202 - 640 1.6e-31 106.3 118.6 18 18 1.5e-05 0.023 15.5 0.5 1 23 613 635 613 636 0.96 C2H2-type zinc finger KRAB PF01352.27 42 ZNF549-202 - 640 2e-23 81.8 0.2 1 1 2.4e-26 3.6e-23 80.9 0.2 2 42 27 67 26 67 0.98 KRAB box zf-C2H2_6 PF13912.6 27 ZNF549-202 - 640 1.5e-15 56.7 93.8 1 14 3.3 4.9e+03 -2.3 0.0 9 26 189 206 188 207 0.80 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF549-202 - 640 1.5e-15 56.7 93.8 2 14 0.00075 1.1 9.3 0.4 2 12 275 285 275 300 0.78 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF549-202 - 640 1.5e-15 56.7 93.8 3 14 4.8e-06 0.0072 16.3 0.7 2 24 304 326 303 329 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF549-202 - 640 1.5e-15 56.7 93.8 4 14 0.00047 0.71 10.0 0.8 2 12 332 342 332 350 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF549-202 - 640 1.5e-15 56.7 93.8 5 14 0.0096 14 5.8 0.3 2 11 361 370 361 375 0.92 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF549-202 - 640 1.5e-15 56.7 93.8 6 14 3.3e-05 0.049 13.6 1.2 1 21 388 408 388 413 0.85 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF549-202 - 640 1.5e-15 56.7 93.8 7 14 0.0011 1.7 8.8 0.6 2 11 417 426 417 427 0.96 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF549-202 - 640 1.5e-15 56.7 93.8 8 14 0.029 43 4.3 0.2 2 11 445 454 445 455 0.95 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF549-202 - 640 1.5e-15 56.7 93.8 9 14 0.00084 1.3 9.1 1.2 1 24 472 495 472 498 0.88 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF549-202 - 640 1.5e-15 56.7 93.8 10 14 0.0017 2.5 8.2 0.5 2 11 501 510 501 512 0.95 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF549-202 - 640 1.5e-15 56.7 93.8 11 14 5.7e-05 0.085 12.9 1.9 3 24 530 551 530 554 0.92 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF549-202 - 640 1.5e-15 56.7 93.8 12 14 0.0063 9.5 6.4 4.4 3 25 558 580 558 582 0.91 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF549-202 - 640 1.5e-15 56.7 93.8 13 14 0.076 1.1e+02 2.9 0.4 2 12 585 595 585 608 0.78 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF549-202 - 640 1.5e-15 56.7 93.8 14 14 0.0017 2.5 8.2 1.0 2 24 613 635 613 636 0.91 C2H2-type zinc finger zf-C2H2_jaz PF12171.8 27 ZNF549-202 - 640 5.8e-10 39.2 79.4 1 15 3.3 4.9e+03 -2.0 0.3 11 22 141 152 139 159 0.74 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF549-202 - 640 5.8e-10 39.2 79.4 2 15 1.3 2e+03 -0.8 0.2 9 24 254 269 253 270 0.84 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF549-202 - 640 5.8e-10 39.2 79.4 3 15 0.0047 7 7.1 0.1 2 21 275 294 274 295 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF549-202 - 640 5.8e-10 39.2 79.4 4 15 0.00016 0.24 11.7 0.6 2 24 304 326 303 327 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF549-202 - 640 5.8e-10 39.2 79.4 5 15 0.0016 2.4 8.5 0.2 2 21 332 351 331 352 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF549-202 - 640 5.8e-10 39.2 79.4 6 15 0.019 29 5.1 0.1 2 21 361 380 360 381 0.86 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF549-202 - 640 5.8e-10 39.2 79.4 7 15 0.16 2.3e+02 2.2 0.4 4 20 391 407 389 407 0.86 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF549-202 - 640 5.8e-10 39.2 79.4 8 15 0.00091 1.4 9.3 0.3 2 22 417 437 416 437 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF549-202 - 640 5.8e-10 39.2 79.4 9 15 2.6e-05 0.039 14.2 0.0 2 22 445 465 444 465 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF549-202 - 640 5.8e-10 39.2 79.4 10 15 0.0014 2.1 8.8 0.6 2 20 473 491 472 493 0.95 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF549-202 - 640 5.8e-10 39.2 79.4 11 15 0.072 1.1e+02 3.3 0.1 2 20 501 519 500 521 0.78 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF549-202 - 640 5.8e-10 39.2 79.4 12 15 0.0061 9.2 6.7 1.1 4 22 531 549 530 549 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF549-202 - 640 5.8e-10 39.2 79.4 13 15 0.75 1.1e+03 0.0 1.9 4 22 559 577 558 577 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF549-202 - 640 5.8e-10 39.2 79.4 14 15 0.0015 2.3 8.6 0.6 2 22 585 605 584 605 0.91 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF549-202 - 640 5.8e-10 39.2 79.4 15 15 0.026 39 4.7 0.1 2 22 613 633 612 633 0.89 Zinc-finger double-stranded RNA-binding Zn-ribbon_8 PF09723.10 40 ZNF549-202 - 640 7.5e-08 32.4 64.3 1 10 5.9 8.8e+03 -3.1 0.1 6 16 222 229 221 237 0.67 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF549-202 - 640 7.5e-08 32.4 64.3 2 10 0.00079 1.2 9.3 0.1 6 36 275 313 272 317 0.86 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF549-202 - 640 7.5e-08 32.4 64.3 3 10 0.00031 0.47 10.6 1.3 6 34 332 368 330 371 0.91 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF549-202 - 640 7.5e-08 32.4 64.3 4 10 0.011 16 5.7 4.5 6 34 361 396 360 398 0.85 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF549-202 - 640 7.5e-08 32.4 64.3 5 10 0.01 15 5.8 0.7 6 15 389 398 388 411 0.84 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF549-202 - 640 7.5e-08 32.4 64.3 6 10 0.00013 0.19 11.9 0.8 6 34 417 452 416 457 0.90 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF549-202 - 640 7.5e-08 32.4 64.3 7 10 0.00048 0.72 10.0 4.6 6 34 473 508 472 511 0.90 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF549-202 - 640 7.5e-08 32.4 64.3 8 10 0.00097 1.5 9.0 6.0 6 34 501 536 500 536 0.87 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF549-202 - 640 7.5e-08 32.4 64.3 9 10 0.0065 9.7 6.4 9.6 7 34 530 564 528 570 0.92 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF549-202 - 640 7.5e-08 32.4 64.3 10 10 0.00075 1.1 9.4 2.6 6 38 585 624 584 626 0.89 Zinc ribbon domain # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF549-202.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF549-202.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF549-202.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF549-202.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF549-202.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:08:43 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF549-203.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF549-203.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF549-203.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF549-203.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF549-203.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:08:43 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF549-204.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF549-204.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF549-204.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF549-204.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF549-204.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:08:43 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZNF550-201 - 422 4.3e-60 197.6 59.4 1 9 1.5e-05 0.012 16.0 0.2 9 25 197 213 194 214 0.90 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF550-201 - 422 4.3e-60 197.6 59.4 2 9 4.1e-12 3.5e-09 36.7 0.2 2 25 218 241 217 242 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF550-201 - 422 4.3e-60 197.6 59.4 3 9 2.6e-10 2.2e-07 31.0 0.7 2 26 246 270 245 270 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF550-201 - 422 4.3e-60 197.6 59.4 4 9 2.7e-09 2.3e-06 27.8 3.1 2 26 274 298 273 298 0.89 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF550-201 - 422 4.3e-60 197.6 59.4 5 9 2.9e-11 2.5e-08 34.0 2.0 4 26 304 326 302 326 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF550-201 - 422 4.3e-60 197.6 59.4 6 9 2.4e-09 2.1e-06 27.9 1.1 1 25 329 353 329 354 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF550-201 - 422 4.3e-60 197.6 59.4 7 9 3.4e-11 2.9e-08 33.8 0.7 2 24 358 380 357 382 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF550-201 - 422 4.3e-60 197.6 59.4 8 9 4.3e-09 3.7e-06 27.1 0.1 2 26 386 410 385 410 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF550-201 - 422 4.3e-60 197.6 59.4 9 9 1.6 1.3e+03 0.1 1.5 1 10 413 422 413 422 0.88 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZNF550-201 - 422 4.9e-37 124.3 60.9 1 8 7.3e-09 6.3e-06 26.4 1.4 1 23 203 225 203 225 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF550-201 - 422 4.9e-37 124.3 60.9 2 8 7.9e-08 6.7e-05 23.1 0.2 1 23 231 253 231 253 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF550-201 - 422 4.9e-37 124.3 60.9 3 8 6.1e-07 0.00052 20.3 1.7 1 20 259 278 259 281 0.94 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF550-201 - 422 4.9e-37 124.3 60.9 4 8 7.8e-06 0.0067 16.8 5.0 1 23 287 309 287 309 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF550-201 - 422 4.9e-37 124.3 60.9 5 8 5.5e-07 0.00047 20.5 0.6 1 23 315 337 315 337 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF550-201 - 422 4.9e-37 124.3 60.9 6 8 2.6e-05 0.022 15.2 0.8 1 23 343 365 343 365 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF550-201 - 422 4.9e-37 124.3 60.9 7 8 2e-05 0.017 15.5 1.1 1 23 371 393 371 393 0.92 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF550-201 - 422 4.9e-37 124.3 60.9 8 8 6.8e-08 5.8e-05 23.3 2.2 1 23 399 421 399 421 0.97 Zinc finger, C2H2 type KRAB PF01352.27 42 ZNF550-201 - 422 1.3e-23 82.4 0.2 1 1 2.4e-26 2.1e-23 81.7 0.2 1 42 11 52 11 52 0.99 KRAB box zf-C2H2_4 PF13894.6 24 ZNF550-201 - 422 9.6e-22 75.8 57.6 1 8 3.6e-06 0.003 18.2 1.3 1 23 203 225 203 226 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF550-201 - 422 9.6e-22 75.8 57.6 2 8 2.6e-05 0.022 15.6 0.2 1 23 231 253 231 254 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF550-201 - 422 9.6e-22 75.8 57.6 3 8 0.00071 0.6 11.1 1.3 1 20 259 278 259 281 0.88 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF550-201 - 422 9.6e-22 75.8 57.6 4 8 0.0038 3.2 8.8 2.9 1 23 287 309 287 310 0.86 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF550-201 - 422 9.6e-22 75.8 57.6 5 8 4.5e-05 0.038 14.8 0.7 1 23 315 337 315 338 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF550-201 - 422 9.6e-22 75.8 57.6 6 8 0.00023 0.19 12.6 0.8 3 23 345 365 343 366 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF550-201 - 422 9.6e-22 75.8 57.6 7 8 7.4e-05 0.063 14.1 1.0 1 23 371 393 371 394 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF550-201 - 422 9.6e-22 75.8 57.6 8 8 1.1e-05 0.0096 16.7 1.9 1 23 399 421 399 422 0.96 C2H2-type zinc finger XPA_N PF01286.18 32 ZNF550-201 - 422 6.9e-11 42.0 24.4 1 8 0.0082 7 6.8 0.0 3 17 204 218 202 220 0.88 XPA protein N-terminal XPA_N PF01286.18 32 ZNF550-201 - 422 6.9e-11 42.0 24.4 2 8 0.016 14 5.9 0.0 3 14 232 243 230 251 0.85 XPA protein N-terminal XPA_N PF01286.18 32 ZNF550-201 - 422 6.9e-11 42.0 24.4 3 8 0.00012 0.1 12.6 0.0 3 19 260 277 258 279 0.87 XPA protein N-terminal XPA_N PF01286.18 32 ZNF550-201 - 422 6.9e-11 42.0 24.4 4 8 0.36 3.1e+02 1.5 0.2 3 12 288 297 286 298 0.86 XPA protein N-terminal XPA_N PF01286.18 32 ZNF550-201 - 422 6.9e-11 42.0 24.4 5 8 0.016 13 5.9 0.3 3 12 316 325 314 331 0.91 XPA protein N-terminal XPA_N PF01286.18 32 ZNF550-201 - 422 6.9e-11 42.0 24.4 6 8 0.096 82 3.4 0.4 3 13 344 354 342 360 0.86 XPA protein N-terminal XPA_N PF01286.18 32 ZNF550-201 - 422 6.9e-11 42.0 24.4 7 8 0.0015 1.3 9.1 0.0 3 17 372 386 370 389 0.87 XPA protein N-terminal XPA_N PF01286.18 32 ZNF550-201 - 422 6.9e-11 42.0 24.4 8 8 0.0034 2.9 8.0 0.1 3 12 400 409 398 417 0.78 XPA protein N-terminal zf-C2H2_jaz PF12171.8 27 ZNF550-201 - 422 2.1e-10 40.6 37.0 1 8 0.029 25 5.3 0.3 2 14 203 215 202 223 0.79 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF550-201 - 422 2.1e-10 40.6 37.0 2 8 0.0066 5.6 7.4 0.0 2 21 231 250 230 251 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF550-201 - 422 2.1e-10 40.6 37.0 3 8 0.0023 1.9 8.9 0.1 2 20 259 277 258 277 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF550-201 - 422 2.1e-10 40.6 37.0 4 8 0.0092 7.9 6.9 0.8 2 23 287 308 286 309 0.91 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF550-201 - 422 2.1e-10 40.6 37.0 5 8 7.5e-05 0.064 13.6 0.9 2 21 315 334 314 335 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF550-201 - 422 2.1e-10 40.6 37.0 6 8 0.09 77 3.7 0.2 2 22 343 363 342 363 0.88 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF550-201 - 422 2.1e-10 40.6 37.0 7 8 0.031 26 5.2 0.3 2 20 371 389 370 389 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF550-201 - 422 2.1e-10 40.6 37.0 8 8 0.00014 0.12 12.7 0.2 2 22 399 419 398 419 0.93 Zinc-finger double-stranded RNA-binding Zn-ribbon_8 PF09723.10 40 ZNF550-201 - 422 5.8e-07 29.5 39.9 1 8 7.9e-05 0.068 13.3 3.3 6 35 203 239 202 242 0.89 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF550-201 - 422 5.8e-07 29.5 39.9 2 8 0.00018 0.15 12.2 3.1 6 38 231 270 228 271 0.82 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF550-201 - 422 5.8e-07 29.5 39.9 3 8 0.0013 1.1 9.4 4.5 6 34 259 294 258 299 0.84 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF550-201 - 422 5.8e-07 29.5 39.9 4 8 0.17 1.5e+02 2.6 7.1 6 33 287 321 286 323 0.68 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF550-201 - 422 5.8e-07 29.5 39.9 5 8 0.015 13 6.0 3.9 6 35 315 351 313 353 0.76 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF550-201 - 422 5.8e-07 29.5 39.9 6 8 0.0004 0.34 11.0 4.7 6 38 343 382 342 383 0.91 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF550-201 - 422 5.8e-07 29.5 39.9 7 8 8.7e-05 0.074 13.2 3.4 6 38 371 410 370 412 0.84 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF550-201 - 422 5.8e-07 29.5 39.9 8 8 0.017 14 5.9 0.3 6 18 399 411 396 418 0.84 Zinc ribbon domain # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF550-201.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF550-201.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF550-201.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF550-201.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF550-201.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:08:44 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZNF550-202 - 288 9e-62 202.9 59.4 1 9 1.3e-05 0.0078 16.6 0.2 9 25 63 79 60 80 0.90 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF550-202 - 288 9e-62 202.9 59.4 2 9 3.5e-12 2.2e-09 37.3 0.2 2 25 84 107 83 108 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF550-202 - 288 9e-62 202.9 59.4 3 9 2.2e-10 1.3e-07 31.7 0.7 2 26 112 136 111 136 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF550-202 - 288 9e-62 202.9 59.4 4 9 2.3e-09 1.4e-06 28.4 3.1 2 26 140 164 139 164 0.89 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF550-202 - 288 9e-62 202.9 59.4 5 9 2.5e-11 1.5e-08 34.6 2.0 4 26 170 192 168 192 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF550-202 - 288 9e-62 202.9 59.4 6 9 2e-09 1.3e-06 28.6 1.1 1 25 195 219 195 220 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF550-202 - 288 9e-62 202.9 59.4 7 9 2.9e-11 1.8e-08 34.4 0.7 2 24 224 246 223 248 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF550-202 - 288 9e-62 202.9 59.4 8 9 3.7e-09 2.3e-06 27.8 0.1 2 26 252 276 251 276 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF550-202 - 288 9e-62 202.9 59.4 9 9 1.4 8.7e+02 0.7 1.5 1 10 279 288 279 288 0.88 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZNF550-202 - 288 1.4e-38 129.2 60.9 1 8 6.3e-09 3.9e-06 27.0 1.4 1 23 69 91 69 91 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF550-202 - 288 1.4e-38 129.2 60.9 2 8 6.7e-08 4.2e-05 23.8 0.2 1 23 97 119 97 119 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF550-202 - 288 1.4e-38 129.2 60.9 3 8 5.2e-07 0.00032 21.0 1.7 1 20 125 144 125 147 0.94 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF550-202 - 288 1.4e-38 129.2 60.9 4 8 6.7e-06 0.0041 17.5 5.0 1 23 153 175 153 175 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF550-202 - 288 1.4e-38 129.2 60.9 5 8 4.7e-07 0.00029 21.1 0.6 1 23 181 203 181 203 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF550-202 - 288 1.4e-38 129.2 60.9 6 8 2.2e-05 0.014 15.8 0.8 1 23 209 231 209 231 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF550-202 - 288 1.4e-38 129.2 60.9 7 8 1.7e-05 0.011 16.2 1.1 1 23 237 259 237 259 0.92 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF550-202 - 288 1.4e-38 129.2 60.9 8 8 5.8e-08 3.6e-05 24.0 2.2 1 23 265 287 265 287 0.97 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZNF550-202 - 288 2.5e-23 80.7 57.6 1 8 3e-06 0.0019 18.9 1.3 1 23 69 91 69 92 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF550-202 - 288 2.5e-23 80.7 57.6 2 8 2.2e-05 0.013 16.2 0.2 1 23 97 119 97 120 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF550-202 - 288 2.5e-23 80.7 57.6 3 8 0.0006 0.37 11.7 1.3 1 20 125 144 125 147 0.88 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF550-202 - 288 2.5e-23 80.7 57.6 4 8 0.0032 2 9.5 2.9 1 23 153 175 153 176 0.86 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF550-202 - 288 2.5e-23 80.7 57.6 5 8 3.8e-05 0.023 15.5 0.7 1 23 181 203 181 204 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF550-202 - 288 2.5e-23 80.7 57.6 6 8 0.00019 0.12 13.3 0.8 3 23 211 231 209 232 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF550-202 - 288 2.5e-23 80.7 57.6 7 8 6.3e-05 0.039 14.8 1.0 1 23 237 259 237 260 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF550-202 - 288 2.5e-23 80.7 57.6 8 8 9.5e-06 0.0059 17.4 1.9 1 23 265 287 265 288 0.96 C2H2-type zinc finger XPA_N PF01286.18 32 ZNF550-202 - 288 2.4e-12 46.7 24.5 1 8 0.0072 4.4 7.4 0.0 3 17 70 84 68 86 0.88 XPA protein N-terminal XPA_N PF01286.18 32 ZNF550-202 - 288 2.4e-12 46.7 24.5 2 8 0.014 8.7 6.5 0.0 3 14 98 109 96 117 0.85 XPA protein N-terminal XPA_N PF01286.18 32 ZNF550-202 - 288 2.4e-12 46.7 24.5 3 8 0.00011 0.066 13.3 0.0 3 19 126 143 124 145 0.87 XPA protein N-terminal XPA_N PF01286.18 32 ZNF550-202 - 288 2.4e-12 46.7 24.5 4 8 0.32 2e+02 2.1 0.2 3 12 154 163 152 164 0.86 XPA protein N-terminal XPA_N PF01286.18 32 ZNF550-202 - 288 2.4e-12 46.7 24.5 5 8 0.014 8.5 6.5 0.3 3 12 182 191 180 198 0.91 XPA protein N-terminal XPA_N PF01286.18 32 ZNF550-202 - 288 2.4e-12 46.7 24.5 6 8 0.085 52 4.0 0.4 3 13 210 220 208 226 0.86 XPA protein N-terminal XPA_N PF01286.18 32 ZNF550-202 - 288 2.4e-12 46.7 24.5 7 8 0.0013 0.83 9.7 0.0 3 17 238 252 236 255 0.87 XPA protein N-terminal XPA_N PF01286.18 32 ZNF550-202 - 288 2.4e-12 46.7 24.5 8 8 0.003 1.8 8.7 0.1 3 12 266 275 264 284 0.79 XPA protein N-terminal zf-C2H2_jaz PF12171.8 27 ZNF550-202 - 288 5.7e-12 45.6 37.0 1 8 0.025 16 6.0 0.3 2 14 69 81 68 89 0.79 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF550-202 - 288 5.7e-12 45.6 37.0 2 8 0.0057 3.5 8.0 0.0 2 21 97 116 96 117 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF550-202 - 288 5.7e-12 45.6 37.0 3 8 0.002 1.2 9.5 0.1 2 20 125 143 124 143 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF550-202 - 288 5.7e-12 45.6 37.0 4 8 0.0079 4.9 7.6 0.8 2 23 153 174 152 175 0.91 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF550-202 - 288 5.7e-12 45.6 37.0 5 8 6.4e-05 0.04 14.2 0.9 2 21 181 200 180 201 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF550-202 - 288 5.7e-12 45.6 37.0 6 8 0.078 48 4.4 0.2 2 22 209 229 208 229 0.88 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF550-202 - 288 5.7e-12 45.6 37.0 7 8 0.027 16 5.9 0.3 2 20 237 255 236 255 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF550-202 - 288 5.7e-12 45.6 37.0 8 8 0.00012 0.076 13.3 0.2 2 22 265 285 264 285 0.93 Zinc-finger double-stranded RNA-binding Zn-ribbon_8 PF09723.10 40 ZNF550-202 - 288 3.4e-08 33.5 39.9 1 8 5.4e-05 0.033 14.3 3.1 6 35 69 105 68 108 0.89 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF550-202 - 288 3.4e-08 33.5 39.9 2 8 0.00017 0.1 12.7 3.3 6 38 97 136 94 137 0.82 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF550-202 - 288 3.4e-08 33.5 39.9 3 8 0.0012 0.73 10.0 4.7 6 34 125 160 123 166 0.84 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF550-202 - 288 3.4e-08 33.5 39.9 4 8 0.22 1.4e+02 2.7 7.4 6 33 153 187 152 188 0.67 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF550-202 - 288 3.4e-08 33.5 39.9 5 8 0.012 7.4 6.8 3.8 6 35 181 217 180 219 0.76 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF550-202 - 288 3.4e-08 33.5 39.9 6 8 0.00033 0.21 11.8 4.8 6 38 209 248 208 250 0.92 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF550-202 - 288 3.4e-08 33.5 39.9 7 8 7.3e-05 0.045 13.9 3.5 6 38 237 276 235 278 0.84 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF550-202 - 288 3.4e-08 33.5 39.9 8 8 0.014 8.9 6.5 0.2 6 18 265 277 263 284 0.84 Zinc ribbon domain zf-LYAR PF08790.11 28 ZNF550-202 - 288 6.9e-07 29.1 28.9 1 8 0.15 95 3.0 0.0 1 13 69 81 69 87 0.84 LYAR-type C2HC zinc finger zf-LYAR PF08790.11 28 ZNF550-202 - 288 6.9e-07 29.1 28.9 2 8 0.31 1.9e+02 2.1 0.1 3 14 99 110 97 116 0.75 LYAR-type C2HC zinc finger zf-LYAR PF08790.11 28 ZNF550-202 - 288 6.9e-07 29.1 28.9 3 8 0.002 1.3 9.0 0.1 1 15 125 139 125 144 0.89 LYAR-type C2HC zinc finger zf-LYAR PF08790.11 28 ZNF550-202 - 288 6.9e-07 29.1 28.9 4 8 0.047 29 4.7 0.5 1 19 153 172 153 173 0.84 LYAR-type C2HC zinc finger zf-LYAR PF08790.11 28 ZNF550-202 - 288 6.9e-07 29.1 28.9 5 8 0.33 2e+02 2.0 0.1 1 13 181 193 181 200 0.77 LYAR-type C2HC zinc finger zf-LYAR PF08790.11 28 ZNF550-202 - 288 6.9e-07 29.1 28.9 6 8 0.045 28 4.7 0.4 1 18 209 227 209 229 0.77 LYAR-type C2HC zinc finger zf-LYAR PF08790.11 28 ZNF550-202 - 288 6.9e-07 29.1 28.9 7 8 0.0011 0.68 9.9 0.2 1 15 237 251 237 256 0.87 LYAR-type C2HC zinc finger zf-LYAR PF08790.11 28 ZNF550-202 - 288 6.9e-07 29.1 28.9 8 8 0.0014 0.89 9.5 0.1 1 14 265 278 265 284 0.82 LYAR-type C2HC zinc finger # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF550-202.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF550-202.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF550-202.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF550-202.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF550-202.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:08:44 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZNF550-203 - 422 4.3e-60 197.6 59.4 1 9 1.5e-05 0.012 16.0 0.2 9 25 197 213 194 214 0.90 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF550-203 - 422 4.3e-60 197.6 59.4 2 9 4.1e-12 3.5e-09 36.7 0.2 2 25 218 241 217 242 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF550-203 - 422 4.3e-60 197.6 59.4 3 9 2.6e-10 2.2e-07 31.0 0.7 2 26 246 270 245 270 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF550-203 - 422 4.3e-60 197.6 59.4 4 9 2.7e-09 2.3e-06 27.8 3.1 2 26 274 298 273 298 0.89 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF550-203 - 422 4.3e-60 197.6 59.4 5 9 2.9e-11 2.5e-08 34.0 2.0 4 26 304 326 302 326 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF550-203 - 422 4.3e-60 197.6 59.4 6 9 2.4e-09 2.1e-06 27.9 1.1 1 25 329 353 329 354 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF550-203 - 422 4.3e-60 197.6 59.4 7 9 3.4e-11 2.9e-08 33.8 0.7 2 24 358 380 357 382 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF550-203 - 422 4.3e-60 197.6 59.4 8 9 4.3e-09 3.7e-06 27.1 0.1 2 26 386 410 385 410 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF550-203 - 422 4.3e-60 197.6 59.4 9 9 1.6 1.3e+03 0.1 1.5 1 10 413 422 413 422 0.88 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZNF550-203 - 422 4.9e-37 124.3 60.9 1 8 7.3e-09 6.3e-06 26.4 1.4 1 23 203 225 203 225 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF550-203 - 422 4.9e-37 124.3 60.9 2 8 7.9e-08 6.7e-05 23.1 0.2 1 23 231 253 231 253 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF550-203 - 422 4.9e-37 124.3 60.9 3 8 6.1e-07 0.00052 20.3 1.7 1 20 259 278 259 281 0.94 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF550-203 - 422 4.9e-37 124.3 60.9 4 8 7.8e-06 0.0067 16.8 5.0 1 23 287 309 287 309 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF550-203 - 422 4.9e-37 124.3 60.9 5 8 5.5e-07 0.00047 20.5 0.6 1 23 315 337 315 337 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF550-203 - 422 4.9e-37 124.3 60.9 6 8 2.6e-05 0.022 15.2 0.8 1 23 343 365 343 365 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF550-203 - 422 4.9e-37 124.3 60.9 7 8 2e-05 0.017 15.5 1.1 1 23 371 393 371 393 0.92 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF550-203 - 422 4.9e-37 124.3 60.9 8 8 6.8e-08 5.8e-05 23.3 2.2 1 23 399 421 399 421 0.97 Zinc finger, C2H2 type KRAB PF01352.27 42 ZNF550-203 - 422 1.3e-23 82.4 0.2 1 1 2.4e-26 2.1e-23 81.7 0.2 1 42 11 52 11 52 0.99 KRAB box zf-C2H2_4 PF13894.6 24 ZNF550-203 - 422 9.6e-22 75.8 57.6 1 8 3.6e-06 0.003 18.2 1.3 1 23 203 225 203 226 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF550-203 - 422 9.6e-22 75.8 57.6 2 8 2.6e-05 0.022 15.6 0.2 1 23 231 253 231 254 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF550-203 - 422 9.6e-22 75.8 57.6 3 8 0.00071 0.6 11.1 1.3 1 20 259 278 259 281 0.88 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF550-203 - 422 9.6e-22 75.8 57.6 4 8 0.0038 3.2 8.8 2.9 1 23 287 309 287 310 0.86 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF550-203 - 422 9.6e-22 75.8 57.6 5 8 4.5e-05 0.038 14.8 0.7 1 23 315 337 315 338 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF550-203 - 422 9.6e-22 75.8 57.6 6 8 0.00023 0.19 12.6 0.8 3 23 345 365 343 366 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF550-203 - 422 9.6e-22 75.8 57.6 7 8 7.4e-05 0.063 14.1 1.0 1 23 371 393 371 394 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF550-203 - 422 9.6e-22 75.8 57.6 8 8 1.1e-05 0.0096 16.7 1.9 1 23 399 421 399 422 0.96 C2H2-type zinc finger XPA_N PF01286.18 32 ZNF550-203 - 422 6.9e-11 42.0 24.4 1 8 0.0082 7 6.8 0.0 3 17 204 218 202 220 0.88 XPA protein N-terminal XPA_N PF01286.18 32 ZNF550-203 - 422 6.9e-11 42.0 24.4 2 8 0.016 14 5.9 0.0 3 14 232 243 230 251 0.85 XPA protein N-terminal XPA_N PF01286.18 32 ZNF550-203 - 422 6.9e-11 42.0 24.4 3 8 0.00012 0.1 12.6 0.0 3 19 260 277 258 279 0.87 XPA protein N-terminal XPA_N PF01286.18 32 ZNF550-203 - 422 6.9e-11 42.0 24.4 4 8 0.36 3.1e+02 1.5 0.2 3 12 288 297 286 298 0.86 XPA protein N-terminal XPA_N PF01286.18 32 ZNF550-203 - 422 6.9e-11 42.0 24.4 5 8 0.016 13 5.9 0.3 3 12 316 325 314 331 0.91 XPA protein N-terminal XPA_N PF01286.18 32 ZNF550-203 - 422 6.9e-11 42.0 24.4 6 8 0.096 82 3.4 0.4 3 13 344 354 342 360 0.86 XPA protein N-terminal XPA_N PF01286.18 32 ZNF550-203 - 422 6.9e-11 42.0 24.4 7 8 0.0015 1.3 9.1 0.0 3 17 372 386 370 389 0.87 XPA protein N-terminal XPA_N PF01286.18 32 ZNF550-203 - 422 6.9e-11 42.0 24.4 8 8 0.0034 2.9 8.0 0.1 3 12 400 409 398 417 0.78 XPA protein N-terminal zf-C2H2_jaz PF12171.8 27 ZNF550-203 - 422 2.1e-10 40.6 37.0 1 8 0.029 25 5.3 0.3 2 14 203 215 202 223 0.79 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF550-203 - 422 2.1e-10 40.6 37.0 2 8 0.0066 5.6 7.4 0.0 2 21 231 250 230 251 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF550-203 - 422 2.1e-10 40.6 37.0 3 8 0.0023 1.9 8.9 0.1 2 20 259 277 258 277 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF550-203 - 422 2.1e-10 40.6 37.0 4 8 0.0092 7.9 6.9 0.8 2 23 287 308 286 309 0.91 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF550-203 - 422 2.1e-10 40.6 37.0 5 8 7.5e-05 0.064 13.6 0.9 2 21 315 334 314 335 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF550-203 - 422 2.1e-10 40.6 37.0 6 8 0.09 77 3.7 0.2 2 22 343 363 342 363 0.88 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF550-203 - 422 2.1e-10 40.6 37.0 7 8 0.031 26 5.2 0.3 2 20 371 389 370 389 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF550-203 - 422 2.1e-10 40.6 37.0 8 8 0.00014 0.12 12.7 0.2 2 22 399 419 398 419 0.93 Zinc-finger double-stranded RNA-binding Zn-ribbon_8 PF09723.10 40 ZNF550-203 - 422 5.8e-07 29.5 39.9 1 8 7.9e-05 0.068 13.3 3.3 6 35 203 239 202 242 0.89 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF550-203 - 422 5.8e-07 29.5 39.9 2 8 0.00018 0.15 12.2 3.1 6 38 231 270 228 271 0.82 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF550-203 - 422 5.8e-07 29.5 39.9 3 8 0.0013 1.1 9.4 4.5 6 34 259 294 258 299 0.84 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF550-203 - 422 5.8e-07 29.5 39.9 4 8 0.17 1.5e+02 2.6 7.1 6 33 287 321 286 323 0.68 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF550-203 - 422 5.8e-07 29.5 39.9 5 8 0.015 13 6.0 3.9 6 35 315 351 313 353 0.76 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF550-203 - 422 5.8e-07 29.5 39.9 6 8 0.0004 0.34 11.0 4.7 6 38 343 382 342 383 0.91 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF550-203 - 422 5.8e-07 29.5 39.9 7 8 8.7e-05 0.074 13.2 3.4 6 38 371 410 370 412 0.84 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF550-203 - 422 5.8e-07 29.5 39.9 8 8 0.017 14 5.9 0.3 6 18 399 411 396 418 0.84 Zinc ribbon domain # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF550-203.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF550-203.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF550-203.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF550-203.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF550-203.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:08:45 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZNF550-204 - 422 4.3e-60 197.6 59.4 1 9 1.5e-05 0.012 16.0 0.2 9 25 197 213 194 214 0.90 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF550-204 - 422 4.3e-60 197.6 59.4 2 9 4.1e-12 3.5e-09 36.7 0.2 2 25 218 241 217 242 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF550-204 - 422 4.3e-60 197.6 59.4 3 9 2.6e-10 2.2e-07 31.0 0.7 2 26 246 270 245 270 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF550-204 - 422 4.3e-60 197.6 59.4 4 9 2.7e-09 2.3e-06 27.8 3.1 2 26 274 298 273 298 0.89 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF550-204 - 422 4.3e-60 197.6 59.4 5 9 2.9e-11 2.5e-08 34.0 2.0 4 26 304 326 302 326 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF550-204 - 422 4.3e-60 197.6 59.4 6 9 2.4e-09 2.1e-06 27.9 1.1 1 25 329 353 329 354 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF550-204 - 422 4.3e-60 197.6 59.4 7 9 3.4e-11 2.9e-08 33.8 0.7 2 24 358 380 357 382 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF550-204 - 422 4.3e-60 197.6 59.4 8 9 4.3e-09 3.7e-06 27.1 0.1 2 26 386 410 385 410 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF550-204 - 422 4.3e-60 197.6 59.4 9 9 1.6 1.3e+03 0.1 1.5 1 10 413 422 413 422 0.88 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZNF550-204 - 422 4.9e-37 124.3 60.9 1 8 7.3e-09 6.3e-06 26.4 1.4 1 23 203 225 203 225 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF550-204 - 422 4.9e-37 124.3 60.9 2 8 7.9e-08 6.7e-05 23.1 0.2 1 23 231 253 231 253 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF550-204 - 422 4.9e-37 124.3 60.9 3 8 6.1e-07 0.00052 20.3 1.7 1 20 259 278 259 281 0.94 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF550-204 - 422 4.9e-37 124.3 60.9 4 8 7.8e-06 0.0067 16.8 5.0 1 23 287 309 287 309 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF550-204 - 422 4.9e-37 124.3 60.9 5 8 5.5e-07 0.00047 20.5 0.6 1 23 315 337 315 337 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF550-204 - 422 4.9e-37 124.3 60.9 6 8 2.6e-05 0.022 15.2 0.8 1 23 343 365 343 365 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF550-204 - 422 4.9e-37 124.3 60.9 7 8 2e-05 0.017 15.5 1.1 1 23 371 393 371 393 0.92 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF550-204 - 422 4.9e-37 124.3 60.9 8 8 6.8e-08 5.8e-05 23.3 2.2 1 23 399 421 399 421 0.97 Zinc finger, C2H2 type KRAB PF01352.27 42 ZNF550-204 - 422 1.3e-23 82.4 0.2 1 1 2.4e-26 2.1e-23 81.7 0.2 1 42 11 52 11 52 0.99 KRAB box zf-C2H2_4 PF13894.6 24 ZNF550-204 - 422 9.6e-22 75.8 57.6 1 8 3.6e-06 0.003 18.2 1.3 1 23 203 225 203 226 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF550-204 - 422 9.6e-22 75.8 57.6 2 8 2.6e-05 0.022 15.6 0.2 1 23 231 253 231 254 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF550-204 - 422 9.6e-22 75.8 57.6 3 8 0.00071 0.6 11.1 1.3 1 20 259 278 259 281 0.88 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF550-204 - 422 9.6e-22 75.8 57.6 4 8 0.0038 3.2 8.8 2.9 1 23 287 309 287 310 0.86 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF550-204 - 422 9.6e-22 75.8 57.6 5 8 4.5e-05 0.038 14.8 0.7 1 23 315 337 315 338 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF550-204 - 422 9.6e-22 75.8 57.6 6 8 0.00023 0.19 12.6 0.8 3 23 345 365 343 366 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF550-204 - 422 9.6e-22 75.8 57.6 7 8 7.4e-05 0.063 14.1 1.0 1 23 371 393 371 394 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF550-204 - 422 9.6e-22 75.8 57.6 8 8 1.1e-05 0.0096 16.7 1.9 1 23 399 421 399 422 0.96 C2H2-type zinc finger XPA_N PF01286.18 32 ZNF550-204 - 422 6.9e-11 42.0 24.4 1 8 0.0082 7 6.8 0.0 3 17 204 218 202 220 0.88 XPA protein N-terminal XPA_N PF01286.18 32 ZNF550-204 - 422 6.9e-11 42.0 24.4 2 8 0.016 14 5.9 0.0 3 14 232 243 230 251 0.85 XPA protein N-terminal XPA_N PF01286.18 32 ZNF550-204 - 422 6.9e-11 42.0 24.4 3 8 0.00012 0.1 12.6 0.0 3 19 260 277 258 279 0.87 XPA protein N-terminal XPA_N PF01286.18 32 ZNF550-204 - 422 6.9e-11 42.0 24.4 4 8 0.36 3.1e+02 1.5 0.2 3 12 288 297 286 298 0.86 XPA protein N-terminal XPA_N PF01286.18 32 ZNF550-204 - 422 6.9e-11 42.0 24.4 5 8 0.016 13 5.9 0.3 3 12 316 325 314 331 0.91 XPA protein N-terminal XPA_N PF01286.18 32 ZNF550-204 - 422 6.9e-11 42.0 24.4 6 8 0.096 82 3.4 0.4 3 13 344 354 342 360 0.86 XPA protein N-terminal XPA_N PF01286.18 32 ZNF550-204 - 422 6.9e-11 42.0 24.4 7 8 0.0015 1.3 9.1 0.0 3 17 372 386 370 389 0.87 XPA protein N-terminal XPA_N PF01286.18 32 ZNF550-204 - 422 6.9e-11 42.0 24.4 8 8 0.0034 2.9 8.0 0.1 3 12 400 409 398 417 0.78 XPA protein N-terminal zf-C2H2_jaz PF12171.8 27 ZNF550-204 - 422 2.1e-10 40.6 37.0 1 8 0.029 25 5.3 0.3 2 14 203 215 202 223 0.79 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF550-204 - 422 2.1e-10 40.6 37.0 2 8 0.0066 5.6 7.4 0.0 2 21 231 250 230 251 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF550-204 - 422 2.1e-10 40.6 37.0 3 8 0.0023 1.9 8.9 0.1 2 20 259 277 258 277 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF550-204 - 422 2.1e-10 40.6 37.0 4 8 0.0092 7.9 6.9 0.8 2 23 287 308 286 309 0.91 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF550-204 - 422 2.1e-10 40.6 37.0 5 8 7.5e-05 0.064 13.6 0.9 2 21 315 334 314 335 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF550-204 - 422 2.1e-10 40.6 37.0 6 8 0.09 77 3.7 0.2 2 22 343 363 342 363 0.88 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF550-204 - 422 2.1e-10 40.6 37.0 7 8 0.031 26 5.2 0.3 2 20 371 389 370 389 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF550-204 - 422 2.1e-10 40.6 37.0 8 8 0.00014 0.12 12.7 0.2 2 22 399 419 398 419 0.93 Zinc-finger double-stranded RNA-binding Zn-ribbon_8 PF09723.10 40 ZNF550-204 - 422 5.8e-07 29.5 39.9 1 8 7.9e-05 0.068 13.3 3.3 6 35 203 239 202 242 0.89 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF550-204 - 422 5.8e-07 29.5 39.9 2 8 0.00018 0.15 12.2 3.1 6 38 231 270 228 271 0.82 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF550-204 - 422 5.8e-07 29.5 39.9 3 8 0.0013 1.1 9.4 4.5 6 34 259 294 258 299 0.84 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF550-204 - 422 5.8e-07 29.5 39.9 4 8 0.17 1.5e+02 2.6 7.1 6 33 287 321 286 323 0.68 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF550-204 - 422 5.8e-07 29.5 39.9 5 8 0.015 13 6.0 3.9 6 35 315 351 313 353 0.76 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF550-204 - 422 5.8e-07 29.5 39.9 6 8 0.0004 0.34 11.0 4.7 6 38 343 382 342 383 0.91 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF550-204 - 422 5.8e-07 29.5 39.9 7 8 8.7e-05 0.074 13.2 3.4 6 38 371 410 370 412 0.84 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF550-204 - 422 5.8e-07 29.5 39.9 8 8 0.017 14 5.9 0.3 6 18 399 411 396 418 0.84 Zinc ribbon domain # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF550-204.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF550-204.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF550-204.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF550-204.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF550-204.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:08:45 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZNF550-205 - 422 4.3e-60 197.6 59.4 1 9 1.5e-05 0.012 16.0 0.2 9 25 197 213 194 214 0.90 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF550-205 - 422 4.3e-60 197.6 59.4 2 9 4.1e-12 3.5e-09 36.7 0.2 2 25 218 241 217 242 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF550-205 - 422 4.3e-60 197.6 59.4 3 9 2.6e-10 2.2e-07 31.0 0.7 2 26 246 270 245 270 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF550-205 - 422 4.3e-60 197.6 59.4 4 9 2.7e-09 2.3e-06 27.8 3.1 2 26 274 298 273 298 0.89 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF550-205 - 422 4.3e-60 197.6 59.4 5 9 2.9e-11 2.5e-08 34.0 2.0 4 26 304 326 302 326 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF550-205 - 422 4.3e-60 197.6 59.4 6 9 2.4e-09 2.1e-06 27.9 1.1 1 25 329 353 329 354 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF550-205 - 422 4.3e-60 197.6 59.4 7 9 3.4e-11 2.9e-08 33.8 0.7 2 24 358 380 357 382 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF550-205 - 422 4.3e-60 197.6 59.4 8 9 4.3e-09 3.7e-06 27.1 0.1 2 26 386 410 385 410 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF550-205 - 422 4.3e-60 197.6 59.4 9 9 1.6 1.3e+03 0.1 1.5 1 10 413 422 413 422 0.88 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZNF550-205 - 422 4.9e-37 124.3 60.9 1 8 7.3e-09 6.3e-06 26.4 1.4 1 23 203 225 203 225 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF550-205 - 422 4.9e-37 124.3 60.9 2 8 7.9e-08 6.7e-05 23.1 0.2 1 23 231 253 231 253 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF550-205 - 422 4.9e-37 124.3 60.9 3 8 6.1e-07 0.00052 20.3 1.7 1 20 259 278 259 281 0.94 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF550-205 - 422 4.9e-37 124.3 60.9 4 8 7.8e-06 0.0067 16.8 5.0 1 23 287 309 287 309 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF550-205 - 422 4.9e-37 124.3 60.9 5 8 5.5e-07 0.00047 20.5 0.6 1 23 315 337 315 337 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF550-205 - 422 4.9e-37 124.3 60.9 6 8 2.6e-05 0.022 15.2 0.8 1 23 343 365 343 365 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF550-205 - 422 4.9e-37 124.3 60.9 7 8 2e-05 0.017 15.5 1.1 1 23 371 393 371 393 0.92 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF550-205 - 422 4.9e-37 124.3 60.9 8 8 6.8e-08 5.8e-05 23.3 2.2 1 23 399 421 399 421 0.97 Zinc finger, C2H2 type KRAB PF01352.27 42 ZNF550-205 - 422 1.3e-23 82.4 0.2 1 1 2.4e-26 2.1e-23 81.7 0.2 1 42 11 52 11 52 0.99 KRAB box zf-C2H2_4 PF13894.6 24 ZNF550-205 - 422 9.6e-22 75.8 57.6 1 8 3.6e-06 0.003 18.2 1.3 1 23 203 225 203 226 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF550-205 - 422 9.6e-22 75.8 57.6 2 8 2.6e-05 0.022 15.6 0.2 1 23 231 253 231 254 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF550-205 - 422 9.6e-22 75.8 57.6 3 8 0.00071 0.6 11.1 1.3 1 20 259 278 259 281 0.88 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF550-205 - 422 9.6e-22 75.8 57.6 4 8 0.0038 3.2 8.8 2.9 1 23 287 309 287 310 0.86 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF550-205 - 422 9.6e-22 75.8 57.6 5 8 4.5e-05 0.038 14.8 0.7 1 23 315 337 315 338 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF550-205 - 422 9.6e-22 75.8 57.6 6 8 0.00023 0.19 12.6 0.8 3 23 345 365 343 366 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF550-205 - 422 9.6e-22 75.8 57.6 7 8 7.4e-05 0.063 14.1 1.0 1 23 371 393 371 394 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF550-205 - 422 9.6e-22 75.8 57.6 8 8 1.1e-05 0.0096 16.7 1.9 1 23 399 421 399 422 0.96 C2H2-type zinc finger XPA_N PF01286.18 32 ZNF550-205 - 422 6.9e-11 42.0 24.4 1 8 0.0082 7 6.8 0.0 3 17 204 218 202 220 0.88 XPA protein N-terminal XPA_N PF01286.18 32 ZNF550-205 - 422 6.9e-11 42.0 24.4 2 8 0.016 14 5.9 0.0 3 14 232 243 230 251 0.85 XPA protein N-terminal XPA_N PF01286.18 32 ZNF550-205 - 422 6.9e-11 42.0 24.4 3 8 0.00012 0.1 12.6 0.0 3 19 260 277 258 279 0.87 XPA protein N-terminal XPA_N PF01286.18 32 ZNF550-205 - 422 6.9e-11 42.0 24.4 4 8 0.36 3.1e+02 1.5 0.2 3 12 288 297 286 298 0.86 XPA protein N-terminal XPA_N PF01286.18 32 ZNF550-205 - 422 6.9e-11 42.0 24.4 5 8 0.016 13 5.9 0.3 3 12 316 325 314 331 0.91 XPA protein N-terminal XPA_N PF01286.18 32 ZNF550-205 - 422 6.9e-11 42.0 24.4 6 8 0.096 82 3.4 0.4 3 13 344 354 342 360 0.86 XPA protein N-terminal XPA_N PF01286.18 32 ZNF550-205 - 422 6.9e-11 42.0 24.4 7 8 0.0015 1.3 9.1 0.0 3 17 372 386 370 389 0.87 XPA protein N-terminal XPA_N PF01286.18 32 ZNF550-205 - 422 6.9e-11 42.0 24.4 8 8 0.0034 2.9 8.0 0.1 3 12 400 409 398 417 0.78 XPA protein N-terminal zf-C2H2_jaz PF12171.8 27 ZNF550-205 - 422 2.1e-10 40.6 37.0 1 8 0.029 25 5.3 0.3 2 14 203 215 202 223 0.79 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF550-205 - 422 2.1e-10 40.6 37.0 2 8 0.0066 5.6 7.4 0.0 2 21 231 250 230 251 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF550-205 - 422 2.1e-10 40.6 37.0 3 8 0.0023 1.9 8.9 0.1 2 20 259 277 258 277 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF550-205 - 422 2.1e-10 40.6 37.0 4 8 0.0092 7.9 6.9 0.8 2 23 287 308 286 309 0.91 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF550-205 - 422 2.1e-10 40.6 37.0 5 8 7.5e-05 0.064 13.6 0.9 2 21 315 334 314 335 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF550-205 - 422 2.1e-10 40.6 37.0 6 8 0.09 77 3.7 0.2 2 22 343 363 342 363 0.88 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF550-205 - 422 2.1e-10 40.6 37.0 7 8 0.031 26 5.2 0.3 2 20 371 389 370 389 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF550-205 - 422 2.1e-10 40.6 37.0 8 8 0.00014 0.12 12.7 0.2 2 22 399 419 398 419 0.93 Zinc-finger double-stranded RNA-binding Zn-ribbon_8 PF09723.10 40 ZNF550-205 - 422 5.8e-07 29.5 39.9 1 8 7.9e-05 0.068 13.3 3.3 6 35 203 239 202 242 0.89 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF550-205 - 422 5.8e-07 29.5 39.9 2 8 0.00018 0.15 12.2 3.1 6 38 231 270 228 271 0.82 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF550-205 - 422 5.8e-07 29.5 39.9 3 8 0.0013 1.1 9.4 4.5 6 34 259 294 258 299 0.84 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF550-205 - 422 5.8e-07 29.5 39.9 4 8 0.17 1.5e+02 2.6 7.1 6 33 287 321 286 323 0.68 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF550-205 - 422 5.8e-07 29.5 39.9 5 8 0.015 13 6.0 3.9 6 35 315 351 313 353 0.76 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF550-205 - 422 5.8e-07 29.5 39.9 6 8 0.0004 0.34 11.0 4.7 6 38 343 382 342 383 0.91 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF550-205 - 422 5.8e-07 29.5 39.9 7 8 8.7e-05 0.074 13.2 3.4 6 38 371 410 370 412 0.84 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF550-205 - 422 5.8e-07 29.5 39.9 8 8 0.017 14 5.9 0.3 6 18 399 411 396 418 0.84 Zinc ribbon domain # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF550-205.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF550-205.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF550-205.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF550-205.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF550-205.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:08:46 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZNF550-206 - 381 1.9e-60 198.8 59.4 1 9 1.5e-05 0.011 16.1 0.2 9 25 156 172 153 173 0.90 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF550-206 - 381 1.9e-60 198.8 59.4 2 9 4.1e-12 3.1e-09 36.8 0.2 2 25 177 200 176 201 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF550-206 - 381 1.9e-60 198.8 59.4 3 9 2.6e-10 1.9e-07 31.2 0.7 2 26 205 229 204 229 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF550-206 - 381 1.9e-60 198.8 59.4 4 9 2.7e-09 2e-06 27.9 3.1 2 26 233 257 232 257 0.89 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF550-206 - 381 1.9e-60 198.8 59.4 5 9 3e-11 2.2e-08 34.1 2.0 4 26 263 285 261 285 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF550-206 - 381 1.9e-60 198.8 59.4 6 9 2.4e-09 1.8e-06 28.1 1.1 1 25 288 312 288 313 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF550-206 - 381 1.9e-60 198.8 59.4 7 9 3.4e-11 2.6e-08 33.9 0.7 2 24 317 339 316 341 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF550-206 - 381 1.9e-60 198.8 59.4 8 9 4.4e-09 3.3e-06 27.3 0.1 2 26 345 369 344 369 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF550-206 - 381 1.9e-60 198.8 59.4 9 9 1.6 1.2e+03 0.2 1.5 1 10 372 381 372 381 0.88 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZNF550-206 - 381 2e-37 125.6 60.9 1 8 7.4e-09 5.5e-06 26.5 1.4 1 23 162 184 162 184 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF550-206 - 381 2e-37 125.6 60.9 2 8 8e-08 5.9e-05 23.3 0.2 1 23 190 212 190 212 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF550-206 - 381 2e-37 125.6 60.9 3 8 6.2e-07 0.00046 20.5 1.7 1 20 218 237 218 240 0.94 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF550-206 - 381 2e-37 125.6 60.9 4 8 7.9e-06 0.0059 17.0 5.0 1 23 246 268 246 268 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF550-206 - 381 2e-37 125.6 60.9 5 8 5.5e-07 0.00041 20.6 0.6 1 23 274 296 274 296 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF550-206 - 381 2e-37 125.6 60.9 6 8 2.6e-05 0.02 15.4 0.8 1 23 302 324 302 324 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF550-206 - 381 2e-37 125.6 60.9 7 8 2.1e-05 0.015 15.7 1.1 1 23 330 352 330 352 0.92 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF550-206 - 381 2e-37 125.6 60.9 8 8 6.8e-08 5.1e-05 23.5 2.2 1 23 358 380 358 380 0.97 Zinc finger, C2H2 type KRAB PF01352.27 42 ZNF550-206 - 381 1.1e-23 82.6 0.2 1 1 2.4e-26 1.8e-23 81.9 0.2 1 42 2 43 2 43 0.99 KRAB box zf-C2H2_4 PF13894.6 24 ZNF550-206 - 381 3.9e-22 77.0 57.6 1 8 3.6e-06 0.0027 18.4 1.3 1 23 162 184 162 185 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF550-206 - 381 3.9e-22 77.0 57.6 2 8 2.6e-05 0.019 15.8 0.2 1 23 190 212 190 213 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF550-206 - 381 3.9e-22 77.0 57.6 3 8 0.00071 0.53 11.3 1.3 1 20 218 237 218 240 0.88 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF550-206 - 381 3.9e-22 77.0 57.6 4 8 0.0038 2.9 9.0 2.9 1 23 246 268 246 269 0.86 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF550-206 - 381 3.9e-22 77.0 57.6 5 8 4.5e-05 0.034 15.0 0.7 1 23 274 296 274 297 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF550-206 - 381 3.9e-22 77.0 57.6 6 8 0.00023 0.17 12.8 0.8 3 23 304 324 302 325 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF550-206 - 381 3.9e-22 77.0 57.6 7 8 7.5e-05 0.056 14.3 1.0 1 23 330 352 330 353 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF550-206 - 381 3.9e-22 77.0 57.6 8 8 1.1e-05 0.0084 16.9 1.9 1 23 358 380 358 381 0.96 C2H2-type zinc finger XPA_N PF01286.18 32 ZNF550-206 - 381 3e-11 43.2 24.5 1 8 0.0083 6.2 7.0 0.0 3 17 163 177 161 179 0.88 XPA protein N-terminal XPA_N PF01286.18 32 ZNF550-206 - 381 3e-11 43.2 24.5 2 8 0.016 12 6.0 0.0 3 14 191 202 189 210 0.85 XPA protein N-terminal XPA_N PF01286.18 32 ZNF550-206 - 381 3e-11 43.2 24.5 3 8 0.00012 0.093 12.8 0.0 3 19 219 236 217 238 0.87 XPA protein N-terminal XPA_N PF01286.18 32 ZNF550-206 - 381 3e-11 43.2 24.5 4 8 0.36 2.7e+02 1.7 0.2 3 12 247 256 245 257 0.86 XPA protein N-terminal XPA_N PF01286.18 32 ZNF550-206 - 381 3e-11 43.2 24.5 5 8 0.016 12 6.0 0.3 3 12 275 284 273 290 0.91 XPA protein N-terminal XPA_N PF01286.18 32 ZNF550-206 - 381 3e-11 43.2 24.5 6 8 0.097 73 3.5 0.4 3 13 303 313 301 319 0.86 XPA protein N-terminal XPA_N PF01286.18 32 ZNF550-206 - 381 3e-11 43.2 24.5 7 8 0.0016 1.2 9.3 0.0 3 17 331 345 329 348 0.87 XPA protein N-terminal XPA_N PF01286.18 32 ZNF550-206 - 381 3e-11 43.2 24.5 8 8 0.0034 2.5 8.2 0.1 3 12 359 368 357 377 0.79 XPA protein N-terminal zf-C2H2_jaz PF12171.8 27 ZNF550-206 - 381 8.2e-11 41.9 37.0 1 8 0.029 22 5.5 0.3 2 14 162 174 161 182 0.79 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF550-206 - 381 8.2e-11 41.9 37.0 2 8 0.0066 5 7.5 0.0 2 21 190 209 189 210 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF550-206 - 381 8.2e-11 41.9 37.0 3 8 0.0023 1.7 9.0 0.1 2 20 218 236 217 236 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF550-206 - 381 8.2e-11 41.9 37.0 4 8 0.0093 6.9 7.1 0.8 2 23 246 267 245 268 0.91 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF550-206 - 381 8.2e-11 41.9 37.0 5 8 7.5e-05 0.056 13.7 0.9 2 21 274 293 273 294 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF550-206 - 381 8.2e-11 41.9 37.0 6 8 0.091 68 3.9 0.2 2 22 302 322 301 322 0.88 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF550-206 - 381 8.2e-11 41.9 37.0 7 8 0.031 23 5.4 0.3 2 20 330 348 329 348 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF550-206 - 381 8.2e-11 41.9 37.0 8 8 0.00014 0.11 12.8 0.2 2 22 358 378 357 378 0.93 Zinc-finger double-stranded RNA-binding Zn-ribbon_8 PF09723.10 40 ZNF550-206 - 381 3.2e-07 30.3 40.1 1 8 0.00011 0.086 13.0 3.5 6 34 162 197 161 200 0.90 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF550-206 - 381 3.2e-07 30.3 40.1 2 8 0.00021 0.15 12.2 3.3 6 38 190 229 188 230 0.82 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF550-206 - 381 3.2e-07 30.3 40.1 3 8 0.0013 0.96 9.6 4.5 6 34 218 253 217 259 0.84 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF550-206 - 381 3.2e-07 30.3 40.1 4 8 0.082 61 3.8 6.8 6 34 246 281 245 287 0.70 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF550-206 - 381 3.2e-07 30.3 40.1 5 8 0.014 11 6.3 3.7 6 35 274 310 273 312 0.76 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF550-206 - 381 3.2e-07 30.3 40.1 6 8 0.00038 0.28 11.3 4.7 6 38 302 341 301 343 0.91 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF550-206 - 381 3.2e-07 30.3 40.1 7 8 8.1e-05 0.06 13.5 3.3 6 38 330 369 329 371 0.84 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF550-206 - 381 3.2e-07 30.3 40.1 8 8 0.017 12 6.1 0.2 6 18 358 370 356 377 0.84 Zinc ribbon domain # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF550-206.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF550-206.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF550-206.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF550-206.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF550-206.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:08:46 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- KRAB PF01352.27 42 ZNF550-207 - 120 1.8e-24 85.1 0.2 1 1 1.5e-28 2.6e-24 84.6 0.2 1 42 11 52 11 52 0.99 KRAB box # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF550-207.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF550-207.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF550-207.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF550-207.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF550-207.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:08:47 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- KRAB PF01352.27 42 ZNF550-208 - 125 2e-24 85.0 0.2 1 1 1.6e-28 2.9e-24 84.4 0.2 1 42 11 52 11 52 0.99 KRAB box # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF550-208.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF550-208.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF550-208.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF550-208.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF550-208.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:08:47 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZNF552-201 - 407 1.9e-36 122.9 75.1 1 11 1.7 1.7e+03 -0.2 0.1 11 21 87 97 82 97 0.80 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF552-201 - 407 1.9e-36 122.9 75.1 2 11 0.023 22 5.7 2.6 4 18 108 122 105 123 0.89 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF552-201 - 407 1.9e-36 122.9 75.1 3 11 0.016 15 6.2 0.1 4 15 136 147 133 162 0.78 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF552-201 - 407 1.9e-36 122.9 75.1 4 11 6.5 6.2e+03 -2.0 0.1 8 13 190 195 188 201 0.78 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF552-201 - 407 1.9e-36 122.9 75.1 5 11 0.11 1.1e+02 3.5 0.8 8 26 205 223 202 223 0.90 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF552-201 - 407 1.9e-36 122.9 75.1 6 11 4.7e-08 4.4e-05 23.7 0.3 2 25 255 278 254 279 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF552-201 - 407 1.9e-36 122.9 75.1 7 11 5.6e-10 5.2e-07 29.8 2.8 2 26 283 307 282 307 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF552-201 - 407 1.9e-36 122.9 75.1 8 11 7.7e-12 7.3e-09 35.7 1.2 1 26 310 335 310 335 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF552-201 - 407 1.9e-36 122.9 75.1 9 11 2.6e-11 2.4e-08 34.0 1.1 3 25 340 362 339 363 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF552-201 - 407 1.9e-36 122.9 75.1 10 11 3e-10 2.8e-07 30.7 1.8 1 25 366 390 366 391 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF552-201 - 407 1.9e-36 122.9 75.1 11 11 1.5 1.4e+03 0.0 2.3 1 11 394 404 394 406 0.83 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZNF552-201 - 407 2e-27 94.1 66.3 1 9 0.4 3.8e+02 1.9 0.5 1 23 91 113 91 114 0.77 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF552-201 - 407 2e-27 94.1 66.3 2 9 1.9 1.8e+03 -0.2 0.3 12 23 130 141 126 141 0.87 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF552-201 - 407 2e-27 94.1 66.3 3 9 0.0076 7.2 7.3 0.5 1 21 212 232 212 233 0.91 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF552-201 - 407 2e-27 94.1 66.3 4 9 0.023 22 5.8 0.3 5 23 244 262 242 262 0.93 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF552-201 - 407 2e-27 94.1 66.3 5 9 6.7e-09 6.3e-06 26.3 1.1 1 23 268 290 268 290 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF552-201 - 407 2e-27 94.1 66.3 6 9 1.4e-07 0.00013 22.2 4.3 1 23 296 318 296 318 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF552-201 - 407 2e-27 94.1 66.3 7 9 1.4e-08 1.4e-05 25.3 3.6 1 23 324 346 324 346 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF552-201 - 407 2e-27 94.1 66.3 8 9 5.5e-09 5.2e-06 26.6 0.6 1 23 352 374 352 374 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF552-201 - 407 2e-27 94.1 66.3 9 9 2e-06 0.0019 18.6 2.3 3 23 382 402 380 402 0.97 Zinc finger, C2H2 type KRAB PF01352.27 42 ZNF552-201 - 407 2.6e-21 75.0 0.4 1 1 4.5e-24 4.2e-21 74.3 0.4 2 42 14 54 13 54 0.98 KRAB box zf-C2H2_4 PF13894.6 24 ZNF552-201 - 407 1.8e-15 56.3 64.5 1 8 0.025 24 6.1 0.3 1 24 91 114 91 114 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF552-201 - 407 1.8e-15 56.3 64.5 2 8 0.0025 2.3 9.3 0.4 1 21 212 232 212 234 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF552-201 - 407 1.8e-15 56.3 64.5 3 8 0.067 63 4.8 0.6 5 23 244 262 242 263 0.85 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF552-201 - 407 1.8e-15 56.3 64.5 4 8 2.2e-06 0.002 18.8 0.8 1 23 268 290 268 291 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF552-201 - 407 1.8e-15 56.3 64.5 5 8 0.00082 0.77 10.8 3.9 1 23 296 318 296 319 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF552-201 - 407 1.8e-15 56.3 64.5 6 8 5.5e-05 0.052 14.4 2.8 1 23 324 346 324 347 0.91 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF552-201 - 407 1.8e-15 56.3 64.5 7 8 2.2e-06 0.0021 18.8 0.8 1 23 352 374 352 375 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF552-201 - 407 1.8e-15 56.3 64.5 8 8 8.7e-05 0.082 13.8 2.5 2 23 381 402 380 403 0.92 C2H2-type zinc finger # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF552-201.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF552-201.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF552-201.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF552-201.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF552-201.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:08:47 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF552-202.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF552-202.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF552-202.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF552-202.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF552-202.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:08:48 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZNF552-203 - 403 1.7e-36 123.0 75.1 1 11 1.8 1.6e+03 -0.2 0.1 11 21 83 93 78 93 0.80 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF552-203 - 403 1.7e-36 123.0 75.1 2 11 0.024 22 5.7 2.6 4 18 104 118 101 119 0.89 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF552-203 - 403 1.7e-36 123.0 75.1 3 11 0.017 15 6.2 0.1 4 15 132 143 129 158 0.78 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF552-203 - 403 1.7e-36 123.0 75.1 4 11 6.8 6.1e+03 -2.0 0.1 8 13 186 191 184 197 0.78 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF552-203 - 403 1.7e-36 123.0 75.1 5 11 0.12 1e+02 3.6 0.8 8 26 201 219 198 219 0.90 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF552-203 - 403 1.7e-36 123.0 75.1 6 11 4.9e-08 4.4e-05 23.7 0.3 2 25 251 274 250 275 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF552-203 - 403 1.7e-36 123.0 75.1 7 11 5.8e-10 5.2e-07 29.8 2.8 2 26 279 303 278 303 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF552-203 - 403 1.7e-36 123.0 75.1 8 11 8e-12 7.2e-09 35.7 1.2 1 26 306 331 306 331 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF552-203 - 403 1.7e-36 123.0 75.1 9 11 2.7e-11 2.4e-08 34.0 1.1 3 25 336 358 335 359 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF552-203 - 403 1.7e-36 123.0 75.1 10 11 3.1e-10 2.8e-07 30.7 1.8 1 25 362 386 362 387 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF552-203 - 403 1.7e-36 123.0 75.1 11 11 1.5 1.4e+03 0.0 2.3 1 11 390 400 390 402 0.83 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZNF552-203 - 403 1.8e-27 94.2 66.3 1 9 0.42 3.7e+02 1.9 0.5 1 23 87 109 87 110 0.77 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF552-203 - 403 1.8e-27 94.2 66.3 2 9 1.9 1.7e+03 -0.2 0.3 12 23 126 137 122 137 0.87 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF552-203 - 403 1.8e-27 94.2 66.3 3 9 0.0079 7.1 7.3 0.5 1 21 208 228 208 229 0.91 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF552-203 - 403 1.8e-27 94.2 66.3 4 9 0.024 21 5.8 0.3 5 23 240 258 238 258 0.93 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF552-203 - 403 1.8e-27 94.2 66.3 5 9 7e-09 6.3e-06 26.4 1.1 1 23 264 286 264 286 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF552-203 - 403 1.8e-27 94.2 66.3 6 9 1.5e-07 0.00013 22.2 4.3 1 23 292 314 292 314 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF552-203 - 403 1.8e-27 94.2 66.3 7 9 1.5e-08 1.4e-05 25.3 3.6 1 23 320 342 320 342 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF552-203 - 403 1.8e-27 94.2 66.3 8 9 5.8e-09 5.2e-06 26.6 0.6 1 23 348 370 348 370 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF552-203 - 403 1.8e-27 94.2 66.3 9 9 2.1e-06 0.0019 18.6 2.3 3 23 378 398 376 398 0.97 Zinc finger, C2H2 type KRAB PF01352.27 42 ZNF552-203 - 403 2.5e-21 75.0 0.4 1 1 4.6e-24 4.2e-21 74.3 0.4 2 42 10 50 9 50 0.98 KRAB box zf-C2H2_4 PF13894.6 24 ZNF552-203 - 403 1.7e-15 56.4 64.5 1 8 0.026 24 6.1 0.3 1 24 87 110 87 110 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF552-203 - 403 1.7e-15 56.4 64.5 2 8 0.0026 2.3 9.3 0.4 1 21 208 228 208 230 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF552-203 - 403 1.7e-15 56.4 64.5 3 8 0.07 63 4.8 0.6 5 23 240 258 238 259 0.85 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF552-203 - 403 1.7e-15 56.4 64.5 4 8 2.3e-06 0.002 18.8 0.8 1 23 264 286 264 287 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF552-203 - 403 1.7e-15 56.4 64.5 5 8 0.00085 0.76 10.8 3.9 1 23 292 314 292 315 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF552-203 - 403 1.7e-15 56.4 64.5 6 8 5.7e-05 0.051 14.4 2.8 1 23 320 342 320 343 0.91 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF552-203 - 403 1.7e-15 56.4 64.5 7 8 2.3e-06 0.0021 18.8 0.8 1 23 348 370 348 371 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF552-203 - 403 1.7e-15 56.4 64.5 8 8 9e-05 0.081 13.8 2.5 2 23 377 398 376 399 0.92 C2H2-type zinc finger # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF552-203.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF552-203.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF552-203.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF552-203.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF552-203.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:08:48 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- KRAB PF01352.27 42 ZNF552-204 - 63 9.4e-23 79.6 0.4 1 1 6.2e-27 1.1e-22 79.4 0.4 2 42 14 54 13 54 0.98 KRAB box # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF552-204.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF552-204.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF552-204.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF552-204.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF552-204.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:08:48 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZNF554-201 - 538 1.7e-62 205.2 43.7 1 8 9.6e-06 0.0066 16.8 0.3 2 25 311 334 310 335 0.85 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF554-201 - 538 1.7e-62 205.2 43.7 2 8 1.4e-11 9.9e-09 35.2 0.6 1 26 338 363 338 363 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF554-201 - 538 1.7e-62 205.2 43.7 3 8 1.9e-10 1.3e-07 31.7 0.4 2 25 367 390 366 391 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF554-201 - 538 1.7e-62 205.2 43.7 4 8 3.1e-11 2.1e-08 34.2 0.5 1 24 394 417 394 417 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF554-201 - 538 1.7e-62 205.2 43.7 5 8 2e-11 1.4e-08 34.8 0.5 4 25 425 446 422 447 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF554-201 - 538 1.7e-62 205.2 43.7 6 8 1.7e-11 1.2e-08 35.0 0.2 1 25 450 474 450 475 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF554-201 - 538 1.7e-62 205.2 43.7 7 8 2.3e-12 1.6e-09 37.8 0.5 1 25 478 502 478 503 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF554-201 - 538 1.7e-62 205.2 43.7 8 8 0.003 2.1 8.9 0.1 1 24 506 529 506 531 0.92 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZNF554-201 - 538 4e-47 156.1 57.2 1 9 0.3 2.1e+02 2.7 0.1 3 19 273 291 272 292 0.91 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF554-201 - 538 4e-47 156.1 57.2 2 9 1e-07 6.9e-05 23.1 4.1 1 23 324 346 324 346 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF554-201 - 538 4e-47 156.1 57.2 3 9 4e-09 2.8e-06 27.5 2.4 1 23 352 374 352 374 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF554-201 - 538 4e-47 156.1 57.2 4 9 1.3e-07 8.7e-05 22.8 0.2 3 23 382 402 380 402 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF554-201 - 538 4e-47 156.1 57.2 5 9 1.7e-08 1.2e-05 25.5 3.5 1 23 408 430 408 430 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF554-201 - 538 4e-47 156.1 57.2 6 9 9e-09 6.2e-06 26.4 0.5 1 23 436 458 436 458 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF554-201 - 538 4e-47 156.1 57.2 7 9 6.8e-09 4.7e-06 26.8 1.0 1 23 464 486 464 486 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF554-201 - 538 4e-47 156.1 57.2 8 9 2.8e-09 1.9e-06 28.0 0.9 1 23 492 514 492 514 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF554-201 - 538 4e-47 156.1 57.2 9 9 0.061 42 4.9 0.0 5 16 524 535 521 536 0.92 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZNF554-201 - 538 1.2e-26 91.0 52.0 1 7 2.2e-05 0.015 16.1 3.4 1 23 324 346 324 347 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF554-201 - 538 1.2e-26 91.0 52.0 2 7 8.5e-06 0.0059 17.3 1.7 1 23 352 374 352 375 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF554-201 - 538 1.2e-26 91.0 52.0 3 7 0.00025 0.17 12.8 0.1 2 23 381 402 380 403 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF554-201 - 538 1.2e-26 91.0 52.0 4 7 7.2e-05 0.049 14.5 2.9 1 23 408 430 408 431 0.90 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF554-201 - 538 1.2e-26 91.0 52.0 5 7 5.5e-07 0.00038 21.1 0.4 1 23 436 458 436 459 0.97 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF554-201 - 538 1.2e-26 91.0 52.0 6 7 6.5e-07 0.00045 20.8 0.9 1 23 464 486 464 487 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF554-201 - 538 1.2e-26 91.0 52.0 7 7 2.6e-06 0.0018 19.0 1.1 1 23 492 514 492 515 0.96 C2H2-type zinc finger KRAB PF01352.27 42 ZNF554-201 - 538 3.9e-26 90.4 1.3 1 2 7.9 5.4e+03 -2.9 0.1 11 15 26 30 25 31 0.89 KRAB box KRAB PF01352.27 42 ZNF554-201 - 538 3.9e-26 90.4 1.3 2 2 5.6e-29 3.9e-26 90.4 1.3 1 42 44 85 44 85 0.99 KRAB box zf-C2H2_jaz PF12171.8 27 ZNF554-201 - 538 1.9e-14 53.5 28.4 1 7 0.0016 1.1 9.7 0.4 2 22 324 344 323 344 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF554-201 - 538 1.9e-14 53.5 28.4 2 7 0.00013 0.088 13.1 0.1 2 24 352 374 351 374 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF554-201 - 538 1.9e-14 53.5 28.4 3 7 0.0097 6.7 7.1 0.0 4 22 382 400 380 400 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF554-201 - 538 1.9e-14 53.5 28.4 4 7 1.1 7.6e+02 0.6 1.5 2 11 408 417 407 430 0.77 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF554-201 - 538 1.9e-14 53.5 28.4 5 7 2.5e-05 0.017 15.4 0.2 2 24 436 458 435 458 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF554-201 - 538 1.9e-14 53.5 28.4 6 7 0.0022 1.5 9.2 0.1 2 24 464 486 463 486 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF554-201 - 538 1.9e-14 53.5 28.4 7 7 7.2e-05 0.05 13.9 0.5 2 24 492 514 491 515 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_6 PF13912.6 27 ZNF554-201 - 538 1.3e-11 44.2 57.4 1 7 0.00012 0.086 12.9 2.5 2 24 324 346 324 349 0.88 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF554-201 - 538 1.3e-11 44.2 57.4 2 7 0.00082 0.56 10.3 1.7 2 24 352 374 352 377 0.92 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF554-201 - 538 1.3e-11 44.2 57.4 3 7 0.00036 0.25 11.4 0.3 2 24 380 402 380 405 0.90 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF554-201 - 538 1.3e-11 44.2 57.4 4 7 1.7 1.2e+03 -0.3 5.7 2 24 408 430 408 433 0.80 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF554-201 - 538 1.3e-11 44.2 57.4 5 7 1.8e-05 0.013 15.5 0.8 2 24 436 458 436 461 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF554-201 - 538 1.3e-11 44.2 57.4 6 7 0.00094 0.65 10.1 0.9 2 24 464 486 464 489 0.88 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF554-201 - 538 1.3e-11 44.2 57.4 7 7 1.6e-05 0.011 15.7 3.2 2 26 492 516 492 517 0.95 C2H2-type zinc finger zf-C2H2_11 PF16622.5 29 ZNF554-201 - 538 1.6e-11 43.8 35.7 1 7 0.011 7.4 6.4 1.3 6 26 325 345 322 346 0.93 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF554-201 - 538 1.6e-11 43.8 35.7 2 7 8.1e-06 0.0056 16.4 0.9 6 25 353 372 350 374 0.93 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF554-201 - 538 1.6e-11 43.8 35.7 3 7 0.018 12 5.7 0.2 7 26 382 401 379 402 0.94 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF554-201 - 538 1.6e-11 43.8 35.7 4 7 0.41 2.8e+02 1.4 0.7 5 14 408 417 405 427 0.75 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF554-201 - 538 1.6e-11 43.8 35.7 5 7 0.00072 0.5 10.2 0.1 6 23 437 454 434 457 0.92 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF554-201 - 538 1.6e-11 43.8 35.7 6 7 4.1e-05 0.029 14.1 0.2 5 23 464 482 461 485 0.89 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF554-201 - 538 1.6e-11 43.8 35.7 7 7 0.00086 0.6 9.9 0.4 5 23 492 510 489 512 0.90 zinc-finger C2H2-type Zn-ribbon_8 PF09723.10 40 ZNF554-201 - 538 4.6e-10 39.4 36.6 1 7 7e-05 0.049 13.8 5.9 6 34 324 359 323 362 0.80 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF554-201 - 538 4.6e-10 39.4 36.6 2 7 8.6e-05 0.059 13.5 3.1 6 38 352 391 351 393 0.84 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF554-201 - 538 4.6e-10 39.4 36.6 3 7 0.00033 0.23 11.6 3.3 6 34 380 415 378 417 0.88 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF554-201 - 538 4.6e-10 39.4 36.6 4 7 0.0021 1.5 9.0 7.5 6 35 408 444 407 448 0.90 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF554-201 - 538 4.6e-10 39.4 36.6 5 7 0.00079 0.54 10.4 5.8 6 35 436 472 434 476 0.73 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF554-201 - 538 4.6e-10 39.4 36.6 6 7 0.0032 2.2 8.5 0.5 6 20 464 478 463 487 0.81 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF554-201 - 538 4.6e-10 39.4 36.6 7 7 0.00088 0.6 10.3 0.2 6 18 492 504 491 520 0.78 Zinc ribbon domain # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF554-201.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF554-201.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF554-201.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF554-201.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF554-201.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:08:49 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZNF554-202 - 388 6.7e-64 209.7 43.7 1 8 7.5e-06 0.0045 17.4 0.3 2 25 161 184 160 185 0.85 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF554-202 - 388 6.7e-64 209.7 43.7 2 8 1.1e-11 6.6e-09 35.8 0.6 1 26 188 213 188 213 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF554-202 - 388 6.7e-64 209.7 43.7 3 8 1.5e-10 9e-08 32.2 0.4 2 25 217 240 216 241 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF554-202 - 388 6.7e-64 209.7 43.7 4 8 2.4e-11 1.4e-08 34.7 0.5 1 24 244 267 244 267 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF554-202 - 388 6.7e-64 209.7 43.7 5 8 1.5e-11 9.2e-09 35.3 0.5 4 25 275 296 272 297 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF554-202 - 388 6.7e-64 209.7 43.7 6 8 1.4e-11 8.1e-09 35.5 0.2 1 25 300 324 300 325 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF554-202 - 388 6.7e-64 209.7 43.7 7 8 1.7e-12 1e-09 38.3 0.5 1 25 328 352 328 353 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF554-202 - 388 6.7e-64 209.7 43.7 8 8 0.0023 1.4 9.5 0.1 1 24 356 379 356 381 0.92 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZNF554-202 - 388 1.4e-48 160.7 57.2 1 9 0.24 1.4e+02 3.2 0.1 3 19 123 141 122 142 0.91 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF554-202 - 388 1.4e-48 160.7 57.2 2 9 7.7e-08 4.6e-05 23.6 4.1 1 23 174 196 174 196 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF554-202 - 388 1.4e-48 160.7 57.2 3 9 3.1e-09 1.9e-06 28.0 2.4 1 23 202 224 202 224 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF554-202 - 388 1.4e-48 160.7 57.2 4 9 9.8e-08 5.8e-05 23.3 0.2 3 23 232 252 230 252 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF554-202 - 388 1.4e-48 160.7 57.2 5 9 1.3e-08 8e-06 26.0 3.5 1 23 258 280 258 280 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF554-202 - 388 1.4e-48 160.7 57.2 6 9 7e-09 4.2e-06 26.9 0.5 1 23 286 308 286 308 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF554-202 - 388 1.4e-48 160.7 57.2 7 9 5.2e-09 3.1e-06 27.3 1.0 1 23 314 336 314 336 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF554-202 - 388 1.4e-48 160.7 57.2 8 9 2.2e-09 1.3e-06 28.5 0.9 1 23 342 364 342 364 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF554-202 - 388 1.4e-48 160.7 57.2 9 9 0.048 29 5.4 0.0 5 16 374 385 371 386 0.92 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZNF554-202 - 388 4.7e-28 95.4 51.3 1 7 1.7e-05 0.01 16.6 3.4 1 23 174 196 174 197 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF554-202 - 388 4.7e-28 95.4 51.3 2 7 6.6e-06 0.0039 17.9 1.7 1 23 202 224 202 225 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF554-202 - 388 4.7e-28 95.4 51.3 3 7 0.00019 0.11 13.4 0.1 2 23 231 252 230 253 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF554-202 - 388 4.7e-28 95.4 51.3 4 7 5.5e-05 0.033 15.0 2.9 1 23 258 280 258 281 0.90 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF554-202 - 388 4.7e-28 95.4 51.3 5 7 4.3e-07 0.00025 21.6 0.4 1 23 286 308 286 309 0.97 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF554-202 - 388 4.7e-28 95.4 51.3 6 7 5e-07 0.0003 21.4 0.9 1 23 314 336 314 337 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF554-202 - 388 4.7e-28 95.4 51.3 7 7 2e-06 0.0012 19.5 1.1 1 23 342 364 342 365 0.96 C2H2-type zinc finger zf-C2H2_jaz PF12171.8 27 ZNF554-202 - 388 1.3e-15 57.2 28.4 1 7 0.0012 0.73 10.2 0.4 2 22 174 194 173 194 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF554-202 - 388 1.3e-15 57.2 28.4 2 7 9.9e-05 0.059 13.7 0.1 2 24 202 224 201 224 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF554-202 - 388 1.3e-15 57.2 28.4 3 7 0.0077 4.6 7.7 0.0 4 22 232 250 230 250 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF554-202 - 388 1.3e-15 57.2 28.4 4 7 0.87 5.2e+02 1.1 1.5 2 11 258 267 257 280 0.77 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF554-202 - 388 1.3e-15 57.2 28.4 5 7 2e-05 0.012 15.9 0.2 2 24 286 308 285 308 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF554-202 - 388 1.3e-15 57.2 28.4 6 7 0.0017 1 9.7 0.1 2 24 314 336 313 336 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF554-202 - 388 1.3e-15 57.2 28.4 7 7 5.6e-05 0.033 14.5 0.5 2 24 342 364 341 365 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_6 PF13912.6 27 ZNF554-202 - 388 8.5e-13 48.0 57.7 1 7 9.8e-05 0.058 13.4 2.5 2 24 174 196 174 199 0.88 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF554-202 - 388 8.5e-13 48.0 57.7 2 7 0.00064 0.38 10.8 1.7 2 24 202 224 202 227 0.92 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF554-202 - 388 8.5e-13 48.0 57.7 3 7 0.00028 0.17 11.9 0.3 2 24 230 252 230 255 0.90 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF554-202 - 388 8.5e-13 48.0 57.7 4 7 1.6 9.3e+02 0.0 6.0 2 24 258 280 258 283 0.80 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF554-202 - 388 8.5e-13 48.0 57.7 5 7 1.4e-05 0.0085 16.1 0.8 2 24 286 308 286 311 0.95 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF554-202 - 388 8.5e-13 48.0 57.7 6 7 0.00074 0.44 10.6 0.9 2 24 314 336 314 339 0.88 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF554-202 - 388 8.5e-13 48.0 57.7 7 7 1.3e-05 0.0076 16.2 3.2 2 26 342 366 342 367 0.95 C2H2-type zinc finger zf-C2H2_11 PF16622.5 29 ZNF554-202 - 388 1.3e-12 47.2 35.7 1 7 0.0084 5 7.0 1.3 6 26 175 195 172 196 0.93 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF554-202 - 388 1.3e-12 47.2 35.7 2 7 6.4e-06 0.0038 17.0 0.9 6 25 203 222 200 224 0.93 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF554-202 - 388 1.3e-12 47.2 35.7 3 7 0.014 8.3 6.3 0.2 7 26 232 251 229 252 0.94 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF554-202 - 388 1.3e-12 47.2 35.7 4 7 0.32 1.9e+02 1.9 0.7 5 14 258 267 255 277 0.75 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF554-202 - 388 1.3e-12 47.2 35.7 5 7 0.00057 0.34 10.7 0.1 6 23 287 304 284 307 0.92 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF554-202 - 388 1.3e-12 47.2 35.7 6 7 3.2e-05 0.019 14.7 0.2 5 23 314 332 311 335 0.89 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF554-202 - 388 1.3e-12 47.2 35.7 7 7 0.00068 0.41 10.5 0.4 5 23 342 360 339 362 0.90 zinc-finger C2H2-type Zn-ribbon_8 PF09723.10 40 ZNF554-202 - 388 1.8e-11 44.0 35.1 1 7 5.8e-05 0.035 14.2 6.0 6 34 174 209 173 212 0.80 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF554-202 - 388 1.8e-11 44.0 35.1 2 7 8e-05 0.048 13.8 3.5 6 38 202 241 200 243 0.84 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF554-202 - 388 1.8e-11 44.0 35.1 3 7 0.0011 0.65 10.2 5.5 6 34 230 265 229 269 0.87 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF554-202 - 388 1.8e-11 44.0 35.1 4 7 0.0019 1.1 9.4 7.7 6 35 258 294 257 298 0.90 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF554-202 - 388 1.8e-11 44.0 35.1 5 7 0.0029 1.7 8.8 0.5 6 23 286 303 285 310 0.81 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF554-202 - 388 1.8e-11 44.0 35.1 6 7 0.002 1.2 9.3 0.2 6 20 314 328 313 337 0.81 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF554-202 - 388 1.8e-11 44.0 35.1 7 7 0.00065 0.39 10.9 0.1 6 18 342 354 341 372 0.78 Zinc ribbon domain XPA_N PF01286.18 32 ZNF554-202 - 388 2.1e-07 30.9 28.5 1 8 0.53 3.2e+02 1.5 0.3 3 11 175 183 173 185 0.86 XPA protein N-terminal XPA_N PF01286.18 32 ZNF554-202 - 388 2.1e-07 30.9 28.5 2 8 0.0038 2.3 8.3 0.1 3 14 203 214 201 219 0.89 XPA protein N-terminal XPA_N PF01286.18 32 ZNF554-202 - 388 2.1e-07 30.9 28.5 3 8 0.14 83 3.3 0.1 4 11 232 239 230 245 0.91 XPA protein N-terminal XPA_N PF01286.18 32 ZNF554-202 - 388 2.1e-07 30.9 28.5 4 8 0.00081 0.48 10.5 1.8 3 17 259 273 257 275 0.88 XPA protein N-terminal XPA_N PF01286.18 32 ZNF554-202 - 388 2.1e-07 30.9 28.5 5 8 0.0056 3.3 7.8 0.2 3 13 287 297 285 301 0.91 XPA protein N-terminal XPA_N PF01286.18 32 ZNF554-202 - 388 2.1e-07 30.9 28.5 6 8 0.1 63 3.7 0.0 3 12 315 324 313 331 0.88 XPA protein N-terminal XPA_N PF01286.18 32 ZNF554-202 - 388 2.1e-07 30.9 28.5 7 8 0.0012 0.71 10.0 0.1 3 14 343 354 341 359 0.91 XPA protein N-terminal XPA_N PF01286.18 32 ZNF554-202 - 388 2.1e-07 30.9 28.5 8 8 5.6 3.4e+03 -1.8 0.0 6 11 374 379 373 381 0.84 XPA protein N-terminal zf_UBZ PF18439.1 32 ZNF554-202 - 388 5.1e-07 29.2 31.2 1 7 0.012 7.2 6.3 1.1 3 21 174 193 172 193 0.91 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF554-202 - 388 5.1e-07 29.2 31.2 2 7 0.019 11 5.7 0.1 3 16 202 216 200 221 0.77 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF554-202 - 388 5.1e-07 29.2 31.2 3 7 0.084 50 3.6 0.0 3 20 230 248 228 249 0.78 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF554-202 - 388 5.1e-07 29.2 31.2 4 7 0.017 10 5.8 1.4 3 12 258 267 256 272 0.86 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF554-202 - 388 5.1e-07 29.2 31.2 5 7 0.00065 0.39 10.4 0.3 3 21 286 305 284 305 0.90 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF554-202 - 388 5.1e-07 29.2 31.2 6 7 0.032 19 4.9 0.1 3 15 314 326 312 333 0.80 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF554-202 - 388 5.1e-07 29.2 31.2 7 7 0.00086 0.51 10.0 0.1 3 21 342 361 340 361 0.86 Ubiquitin-Binding Zinc Finger # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF554-202.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF554-202.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF554-202.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF554-202.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF554-202.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:08:49 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZNF554-203 - 487 6.5e-63 206.5 43.7 1 8 9.5e-06 0.0059 17.0 0.3 2 25 260 283 259 284 0.85 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF554-203 - 487 6.5e-63 206.5 43.7 2 8 1.4e-11 8.7e-09 35.4 0.6 1 26 287 312 287 312 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF554-203 - 487 6.5e-63 206.5 43.7 3 8 1.9e-10 1.2e-07 31.8 0.4 2 25 316 339 315 340 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF554-203 - 487 6.5e-63 206.5 43.7 4 8 3.1e-11 1.9e-08 34.3 0.5 1 24 343 366 343 366 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF554-203 - 487 6.5e-63 206.5 43.7 5 8 2e-11 1.2e-08 35.0 0.5 4 25 374 395 371 396 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF554-203 - 487 6.5e-63 206.5 43.7 6 8 1.7e-11 1.1e-08 35.1 0.2 1 25 399 423 399 424 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF554-203 - 487 6.5e-63 206.5 43.7 7 8 2.2e-12 1.4e-09 38.0 0.5 1 25 427 451 427 452 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF554-203 - 487 6.5e-63 206.5 43.7 8 8 0.003 1.8 9.1 0.1 1 24 455 478 455 480 0.92 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZNF554-203 - 487 1.6e-47 157.4 57.2 1 9 0.3 1.9e+02 2.8 0.1 3 19 222 240 221 241 0.91 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF554-203 - 487 1.6e-47 157.4 57.2 2 9 9.9e-08 6.1e-05 23.3 4.1 1 23 273 295 273 295 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF554-203 - 487 1.6e-47 157.4 57.2 3 9 4e-09 2.4e-06 27.7 2.4 1 23 301 323 301 323 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF554-203 - 487 1.6e-47 157.4 57.2 4 9 1.2e-07 7.7e-05 22.9 0.2 3 23 331 351 329 351 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF554-203 - 487 1.6e-47 157.4 57.2 5 9 1.7e-08 1.1e-05 25.7 3.5 1 23 357 379 357 379 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF554-203 - 487 1.6e-47 157.4 57.2 6 9 8.9e-09 5.5e-06 26.5 0.5 1 23 385 407 385 407 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF554-203 - 487 1.6e-47 157.4 57.2 7 9 6.7e-09 4.1e-06 26.9 1.0 1 23 413 435 413 435 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF554-203 - 487 1.6e-47 157.4 57.2 8 9 2.8e-09 1.7e-06 28.1 0.9 1 23 441 463 441 463 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF554-203 - 487 1.6e-47 157.4 57.2 9 9 0.061 38 5.0 0.0 5 16 473 484 470 485 0.92 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZNF554-203 - 487 6e-27 92.0 52.0 1 7 2.2e-05 0.014 16.2 3.4 1 23 273 295 273 296 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF554-203 - 487 6e-27 92.0 52.0 2 7 8.4e-06 0.0052 17.5 1.7 1 23 301 323 301 324 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF554-203 - 487 6e-27 92.0 52.0 3 7 0.00024 0.15 13.0 0.1 2 23 330 351 329 352 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF554-203 - 487 6e-27 92.0 52.0 4 7 7.1e-05 0.044 14.6 2.9 1 23 357 379 357 380 0.90 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF554-203 - 487 6e-27 92.0 52.0 5 7 5.5e-07 0.00034 21.2 0.4 1 23 385 407 385 408 0.97 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF554-203 - 487 6e-27 92.0 52.0 6 7 6.4e-07 0.0004 21.0 0.9 1 23 413 435 413 436 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF554-203 - 487 6e-27 92.0 52.0 7 7 2.5e-06 0.0016 19.1 1.1 1 23 441 463 441 464 0.96 C2H2-type zinc finger KRAB PF01352.27 42 ZNF554-203 - 487 2.3e-20 72.0 1.1 1 1 8.7e-23 5.4e-20 70.8 1.1 9 42 1 34 1 34 0.98 KRAB box zf-C2H2_jaz PF12171.8 27 ZNF554-203 - 487 8.4e-15 54.6 28.4 1 7 0.0016 0.96 9.8 0.4 2 22 273 293 272 293 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF554-203 - 487 8.4e-15 54.6 28.4 2 7 0.00013 0.078 13.3 0.1 2 24 301 323 300 323 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF554-203 - 487 8.4e-15 54.6 28.4 3 7 0.0097 6 7.3 0.0 4 22 331 349 329 349 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF554-203 - 487 8.4e-15 54.6 28.4 4 7 1.1 6.8e+02 0.7 1.5 2 11 357 366 356 379 0.77 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF554-203 - 487 8.4e-15 54.6 28.4 5 7 2.5e-05 0.016 15.5 0.2 2 24 385 407 384 407 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF554-203 - 487 8.4e-15 54.6 28.4 6 7 0.0022 1.3 9.4 0.1 2 24 413 435 412 435 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF554-203 - 487 8.4e-15 54.6 28.4 7 7 7.1e-05 0.044 14.1 0.5 2 24 441 463 440 464 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_6 PF13912.6 27 ZNF554-203 - 487 6.4e-12 45.2 57.6 1 7 0.00012 0.077 13.0 2.5 2 24 273 295 273 298 0.88 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF554-203 - 487 6.4e-12 45.2 57.6 2 7 0.00081 0.5 10.4 1.7 2 24 301 323 301 326 0.92 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF554-203 - 487 6.4e-12 45.2 57.6 3 7 0.00036 0.22 11.6 0.3 2 24 329 351 329 354 0.90 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF554-203 - 487 6.4e-12 45.2 57.6 4 7 2 1.2e+03 -0.4 6.0 2 24 357 379 357 382 0.80 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF554-203 - 487 6.4e-12 45.2 57.6 5 7 1.8e-05 0.011 15.7 0.8 2 24 385 407 385 410 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF554-203 - 487 6.4e-12 45.2 57.6 6 7 0.00094 0.58 10.2 0.9 2 24 413 435 413 438 0.88 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF554-203 - 487 6.4e-12 45.2 57.6 7 7 1.6e-05 0.01 15.8 3.2 2 26 441 465 441 466 0.95 C2H2-type zinc finger zf-C2H2_11 PF16622.5 29 ZNF554-203 - 487 8.1e-12 44.7 35.7 1 7 0.011 6.6 6.6 1.3 6 26 274 294 271 295 0.93 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF554-203 - 487 8.1e-12 44.7 35.7 2 7 8.1e-06 0.005 16.6 0.9 6 25 302 321 299 323 0.93 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF554-203 - 487 8.1e-12 44.7 35.7 3 7 0.018 11 5.9 0.2 7 26 331 350 328 351 0.94 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF554-203 - 487 8.1e-12 44.7 35.7 4 7 0.41 2.5e+02 1.5 0.7 5 14 357 366 354 376 0.75 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF554-203 - 487 8.1e-12 44.7 35.7 5 7 0.00072 0.44 10.3 0.1 6 23 386 403 383 406 0.92 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF554-203 - 487 8.1e-12 44.7 35.7 6 7 4.1e-05 0.025 14.3 0.2 5 23 413 431 410 434 0.89 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF554-203 - 487 8.1e-12 44.7 35.7 7 7 0.00086 0.53 10.1 0.4 5 23 441 459 438 461 0.90 zinc-finger C2H2-type Zn-ribbon_8 PF09723.10 40 ZNF554-203 - 487 5.7e-10 39.1 37.6 1 7 8.4e-05 0.052 13.7 6.1 6 34 273 308 272 311 0.80 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF554-203 - 487 5.7e-10 39.1 37.6 2 7 0.00012 0.075 13.2 3.5 6 38 301 340 300 341 0.83 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF554-203 - 487 5.7e-10 39.1 37.6 3 7 0.0013 0.82 9.8 5.4 6 34 329 364 328 369 0.87 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF554-203 - 487 5.7e-10 39.1 37.6 4 7 0.0028 1.7 8.8 7.9 6 35 357 393 356 397 0.90 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF554-203 - 487 5.7e-10 39.1 37.6 5 7 0.0036 2.2 8.5 5.5 6 33 385 419 384 419 0.73 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF554-203 - 487 5.7e-10 39.1 37.6 6 7 0.0034 2.1 8.5 0.5 6 20 413 427 412 435 0.81 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF554-203 - 487 5.7e-10 39.1 37.6 7 7 0.00087 0.54 10.4 0.2 6 18 441 453 440 469 0.78 Zinc ribbon domain # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF554-203.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF554-203.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF554-203.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF554-203.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF554-203.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:08:50 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- KRAB PF01352.27 42 ZNF554-204 - 181 7.8e-27 92.7 1.3 1 2 0.063 1.1e+03 -0.7 0.1 11 15 26 30 24 32 0.86 KRAB box KRAB PF01352.27 42 ZNF554-204 - 181 7.8e-27 92.7 1.3 2 2 4.4e-31 7.8e-27 92.7 1.3 1 42 44 85 44 85 0.99 KRAB box # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF554-204.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF554-204.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF554-204.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF554-204.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF554-204.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:08:50 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZNF555-201 - 628 2.1e-126 407.3 138.9 1 16 6.2e-06 0.0056 17.1 1.5 8 25 165 182 163 183 0.89 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF555-201 - 628 2.1e-126 407.3 138.9 2 16 5.2e-10 4.7e-07 30.0 1.9 1 24 186 209 186 211 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF555-201 - 628 2.1e-126 407.3 138.9 3 16 2.5e-10 2.2e-07 31.0 0.2 1 24 214 237 214 238 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF555-201 - 628 2.1e-126 407.3 138.9 4 16 2.7e-12 2.4e-09 37.2 1.5 1 25 242 266 242 267 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF555-201 - 628 2.1e-126 407.3 138.9 5 16 2.1e-10 1.9e-07 31.2 2.2 2 25 271 294 270 295 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF555-201 - 628 2.1e-126 407.3 138.9 6 16 1e-10 9.3e-08 32.2 2.6 2 25 299 322 298 323 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF555-201 - 628 2.1e-126 407.3 138.9 7 16 8.8e-13 7.9e-10 38.7 1.0 1 24 326 349 326 351 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF555-201 - 628 2.1e-126 407.3 138.9 8 16 3.2e-12 2.8e-09 37.0 1.6 2 24 355 377 354 379 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF555-201 - 628 2.1e-126 407.3 138.9 9 16 7.5e-11 6.7e-08 32.6 2.1 2 26 383 407 382 407 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF555-201 - 628 2.1e-126 407.3 138.9 10 16 4.5e-12 4.1e-09 36.5 1.3 2 25 411 434 410 434 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF555-201 - 628 2.1e-126 407.3 138.9 11 16 3.5e-12 3.2e-09 36.8 2.2 1 25 438 462 438 462 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF555-201 - 628 2.1e-126 407.3 138.9 12 16 9.1e-07 0.00082 19.7 3.5 3 24 468 489 467 491 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF555-201 - 628 2.1e-126 407.3 138.9 13 16 2.8e-10 2.5e-07 30.8 1.5 1 25 494 518 494 518 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF555-201 - 628 2.1e-126 407.3 138.9 14 16 2.6e-11 2.3e-08 34.1 1.5 2 25 523 546 523 546 0.97 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF555-201 - 628 2.1e-126 407.3 138.9 15 16 2.3e-10 2.1e-07 31.1 4.2 5 25 554 574 553 575 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF555-201 - 628 2.1e-126 407.3 138.9 16 16 4.6e-06 0.0041 17.5 0.7 1 18 578 595 578 607 0.95 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZNF555-201 - 628 6e-71 231.1 130.5 1 15 7.1e-05 0.064 13.7 4.6 1 23 172 194 172 194 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF555-201 - 628 6e-71 231.1 130.5 2 15 2.2e-09 1.9e-06 28.0 0.9 1 23 200 222 200 222 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF555-201 - 628 6e-71 231.1 130.5 3 15 3.7e-08 3.4e-05 24.1 0.7 1 23 228 250 228 250 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF555-201 - 628 6e-71 231.1 130.5 4 15 7.3e-08 6.6e-05 23.2 2.6 1 23 256 278 256 278 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF555-201 - 628 6e-71 231.1 130.5 5 15 1.2e-06 0.0011 19.3 1.5 1 23 284 306 284 306 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF555-201 - 628 6e-71 231.1 130.5 6 15 7.2e-08 6.5e-05 23.2 2.0 1 23 312 334 312 334 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF555-201 - 628 6e-71 231.1 130.5 7 15 1.7e-06 0.0016 18.8 1.5 1 23 340 362 340 362 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF555-201 - 628 6e-71 231.1 130.5 8 15 2.2e-07 0.0002 21.7 1.9 1 23 368 390 368 390 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF555-201 - 628 6e-71 231.1 130.5 9 15 1.5e-08 1.4e-05 25.3 1.6 1 23 396 418 396 418 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF555-201 - 628 6e-71 231.1 130.5 10 15 8.5e-08 7.6e-05 23.0 1.0 1 23 424 446 424 446 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF555-201 - 628 6e-71 231.1 130.5 11 15 1.9e-05 0.017 15.5 1.9 1 23 452 474 452 474 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF555-201 - 628 6e-71 231.1 130.5 12 15 5.3e-05 0.047 14.2 5.4 1 23 480 502 480 502 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF555-201 - 628 6e-71 231.1 130.5 13 15 2.9e-07 0.00026 21.2 0.3 1 23 508 530 508 530 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF555-201 - 628 6e-71 231.1 130.5 14 15 1.8e-06 0.0016 18.8 0.1 1 23 536 558 536 558 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF555-201 - 628 6e-71 231.1 130.5 15 15 1.8e-06 0.0016 18.8 5.3 1 23 564 586 564 586 0.99 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZNF555-201 - 628 1.8e-57 186.9 124.0 1 15 1.8e-05 0.016 16.0 3.6 1 23 172 194 172 195 0.97 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF555-201 - 628 1.8e-57 186.9 124.0 2 15 4.7e-07 0.00042 20.9 0.6 1 23 200 222 200 223 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF555-201 - 628 1.8e-57 186.9 124.0 3 15 4.3e-06 0.0039 17.9 0.7 1 23 228 250 228 251 0.97 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF555-201 - 628 1.8e-57 186.9 124.0 4 15 6.9e-06 0.0062 17.3 1.7 1 23 256 278 256 279 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF555-201 - 628 1.8e-57 186.9 124.0 5 15 7.3e-06 0.0066 17.2 1.3 1 23 284 306 284 307 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF555-201 - 628 1.8e-57 186.9 124.0 6 15 1.3e-06 0.0011 19.6 1.7 1 23 312 334 312 335 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF555-201 - 628 1.8e-57 186.9 124.0 7 15 4.9e-06 0.0044 17.7 1.1 1 23 340 362 340 363 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF555-201 - 628 1.8e-57 186.9 124.0 8 15 5.4e-07 0.00048 20.7 0.8 1 23 368 390 368 391 0.97 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF555-201 - 628 1.8e-57 186.9 124.0 9 15 5.3e-06 0.0047 17.6 1.3 1 23 396 418 396 419 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF555-201 - 628 1.8e-57 186.9 124.0 10 15 5.9e-06 0.0053 17.5 0.8 1 23 424 446 424 447 0.88 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF555-201 - 628 1.8e-57 186.9 124.0 11 15 3.1e-05 0.028 15.2 1.8 1 23 452 474 452 475 0.88 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF555-201 - 628 1.8e-57 186.9 124.0 12 15 2.5e-05 0.023 15.5 4.6 1 23 480 502 480 503 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF555-201 - 628 1.8e-57 186.9 124.0 13 15 2.5e-06 0.0023 18.6 0.6 1 23 508 530 508 531 0.89 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF555-201 - 628 1.8e-57 186.9 124.0 14 15 0.00095 0.85 10.6 0.3 1 23 536 558 536 559 0.90 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF555-201 - 628 1.8e-57 186.9 124.0 15 15 2.9e-07 0.00026 21.6 4.4 1 23 564 586 564 587 0.96 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF555-201 - 628 2e-30 104.2 115.0 1 15 0.35 3.1e+02 1.5 3.3 2 24 172 194 172 197 0.83 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF555-201 - 628 2e-30 104.2 115.0 2 15 2.6e-05 0.023 14.7 0.1 2 22 200 220 200 225 0.88 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF555-201 - 628 2e-30 104.2 115.0 3 15 1.3e-06 0.0012 18.8 0.8 2 24 228 250 227 253 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF555-201 - 628 2e-30 104.2 115.0 4 15 0.00054 0.49 10.5 1.5 2 13 256 267 256 280 0.81 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF555-201 - 628 2e-30 104.2 115.0 5 15 0.0068 6.1 7.0 1.3 2 24 284 306 284 309 0.88 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF555-201 - 628 2e-30 104.2 115.0 6 15 2.5e-05 0.022 14.7 2.0 2 24 312 334 312 337 0.95 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF555-201 - 628 2e-30 104.2 115.0 7 15 7.3e-06 0.0065 16.4 0.9 2 22 340 360 340 364 0.89 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF555-201 - 628 2e-30 104.2 115.0 8 15 2.6e-05 0.023 14.7 0.9 2 24 368 390 368 393 0.95 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF555-201 - 628 2e-30 104.2 115.0 9 15 0.00015 0.13 12.3 1.2 2 24 396 418 396 421 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF555-201 - 628 2e-30 104.2 115.0 10 15 2e-07 0.00018 21.4 0.4 2 25 424 447 424 449 0.95 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF555-201 - 628 2e-30 104.2 115.0 11 15 0.0016 1.5 9.0 0.9 2 12 452 462 452 462 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF555-201 - 628 2e-30 104.2 115.0 12 15 0.0034 3.1 7.9 4.7 2 25 480 503 479 505 0.92 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF555-201 - 628 2e-30 104.2 115.0 13 15 0.0013 1.2 9.3 0.6 2 12 508 518 507 518 0.92 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF555-201 - 628 2e-30 104.2 115.0 14 15 0.00011 0.095 12.7 0.1 2 12 536 546 536 558 0.91 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF555-201 - 628 2e-30 104.2 115.0 15 15 0.13 1.1e+02 2.9 2.8 2 18 564 580 564 586 0.78 C2H2-type zinc finger KRAB PF01352.27 42 ZNF555-201 - 628 6.2e-24 83.4 1.0 1 1 1.2e-26 1.1e-23 82.6 1.0 1 42 3 44 3 44 0.98 KRAB box zf-C2H2_11 PF16622.5 29 ZNF555-201 - 628 7.8e-23 79.9 87.7 1 15 0.0037 3.4 7.5 3.9 5 25 172 192 170 194 0.91 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF555-201 - 628 7.8e-23 79.9 87.7 2 15 0.00011 0.097 12.4 0.5 7 26 202 221 200 222 0.95 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF555-201 - 628 7.8e-23 79.9 87.7 3 15 0.04 36 4.2 0.3 3 24 226 247 225 249 0.81 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF555-201 - 628 7.8e-23 79.9 87.7 4 15 0.00066 0.59 9.9 0.2 5 26 256 276 253 278 0.88 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF555-201 - 628 7.8e-23 79.9 87.7 5 15 0.0063 5.7 6.8 0.2 5 25 284 304 281 306 0.91 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF555-201 - 628 7.8e-23 79.9 87.7 6 15 4.1e-05 0.036 13.8 0.3 5 25 312 332 309 334 0.90 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF555-201 - 628 7.8e-23 79.9 87.7 7 15 0.025 23 4.9 0.4 6 26 341 361 338 362 0.91 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF555-201 - 628 7.8e-23 79.9 87.7 8 15 0.027 25 4.8 0.1 6 23 369 386 366 389 0.91 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF555-201 - 628 7.8e-23 79.9 87.7 9 15 0.0039 3.5 7.5 0.4 6 26 397 417 394 418 0.91 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF555-201 - 628 7.8e-23 79.9 87.7 10 15 2.2e-05 0.02 14.7 0.1 6 25 425 444 422 446 0.93 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF555-201 - 628 7.8e-23 79.9 87.7 11 15 0.042 37 4.2 1.0 6 26 453 473 450 474 0.89 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF555-201 - 628 7.8e-23 79.9 87.7 12 15 2.5e-05 0.022 14.5 1.1 4 25 479 500 476 500 0.92 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF555-201 - 628 7.8e-23 79.9 87.7 13 15 0.013 11 5.8 0.3 5 24 508 527 506 530 0.88 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF555-201 - 628 7.8e-23 79.9 87.7 14 15 0.092 82 3.1 0.0 6 25 537 556 535 558 0.88 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF555-201 - 628 7.8e-23 79.9 87.7 15 15 1.2e-06 0.0011 18.7 2.6 5 26 564 585 561 586 0.95 zinc-finger C2H2-type zf-C2H2_jaz PF12171.8 27 ZNF555-201 - 628 1.4e-21 76.2 70.6 1 14 0.0011 0.99 9.8 0.0 2 22 200 220 199 220 0.90 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF555-201 - 628 1.4e-21 76.2 70.6 2 14 0.00049 0.44 10.9 0.7 2 24 228 250 227 250 0.96 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF555-201 - 628 1.4e-21 76.2 70.6 3 14 0.0033 3 8.2 0.5 2 21 256 275 255 278 0.90 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF555-201 - 628 1.4e-21 76.2 70.6 4 14 0.0049 4.4 7.7 3.3 2 27 284 313 283 313 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF555-201 - 628 1.4e-21 76.2 70.6 5 14 0.04 36 4.8 0.4 2 23 312 333 311 334 0.90 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF555-201 - 628 1.4e-21 76.2 70.6 6 14 0.0018 1.6 9.1 0.2 2 22 340 360 339 360 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF555-201 - 628 1.4e-21 76.2 70.6 7 14 3.2e-05 0.029 14.7 0.1 2 24 368 390 367 391 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF555-201 - 628 1.4e-21 76.2 70.6 8 14 0.0016 1.5 9.2 0.0 2 22 396 416 395 416 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF555-201 - 628 1.4e-21 76.2 70.6 9 14 0.00024 0.22 11.9 0.1 2 24 424 446 423 446 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF555-201 - 628 1.4e-21 76.2 70.6 10 14 0.36 3.2e+02 1.8 0.7 2 12 452 462 451 472 0.81 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF555-201 - 628 1.4e-21 76.2 70.6 11 14 0.0096 8.6 6.8 2.6 2 22 480 500 479 500 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF555-201 - 628 1.4e-21 76.2 70.6 12 14 0.0028 2.5 8.5 0.2 2 24 508 530 507 530 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF555-201 - 628 1.4e-21 76.2 70.6 13 14 0.0081 7.3 7.0 0.0 2 20 536 554 535 556 0.78 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF555-201 - 628 1.4e-21 76.2 70.6 14 14 0.005 4.4 7.7 0.7 4 22 566 584 563 584 0.90 Zinc-finger double-stranded RNA-binding Zn-ribbon_8 PF09723.10 40 ZNF555-201 - 628 2e-15 56.6 87.0 1 14 0.024 22 5.3 5.4 6 38 172 211 171 212 0.76 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF555-201 - 628 2e-15 56.6 87.0 2 14 8.2e-05 0.074 13.2 1.9 6 34 200 235 199 238 0.90 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF555-201 - 628 2e-15 56.6 87.0 3 14 0.00078 0.7 10.1 5.5 6 34 228 263 226 266 0.79 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF555-201 - 628 2e-15 56.6 87.0 4 14 0.0051 4.6 7.4 0.7 6 16 256 266 255 281 0.82 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF555-201 - 628 2e-15 56.6 87.0 5 14 0.00012 0.11 12.6 3.4 6 34 284 319 283 322 0.89 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF555-201 - 628 2e-15 56.6 87.0 6 14 0.00011 0.1 12.7 5.7 6 34 340 375 339 377 0.84 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF555-201 - 628 2e-15 56.6 87.0 7 14 0.0065 5.8 7.1 0.9 6 17 368 379 367 390 0.78 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF555-201 - 628 2e-15 56.6 87.0 8 14 0.00083 0.75 10.0 5.4 6 34 396 431 394 432 0.84 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF555-201 - 628 2e-15 56.6 87.0 9 14 7.8e-06 0.007 16.5 2.7 6 34 424 459 422 464 0.81 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF555-201 - 628 2e-15 56.6 87.0 10 14 0.00081 0.73 10.0 5.8 6 34 452 487 450 490 0.90 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF555-201 - 628 2e-15 56.6 87.0 11 14 0.0019 1.7 8.8 5.2 6 34 480 515 478 518 0.76 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF555-201 - 628 2e-15 56.6 87.0 12 14 0.0044 3.9 7.7 0.2 6 16 508 518 507 531 0.82 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF555-201 - 628 2e-15 56.6 87.0 13 14 6.4e-06 0.0057 16.7 2.1 6 34 536 571 535 583 0.84 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF555-201 - 628 2e-15 56.6 87.0 14 14 0.0088 7.9 6.7 1.1 6 22 564 586 563 599 0.69 Zinc ribbon domain zf-trcl PF13451.6 48 ZNF555-201 - 628 5e-14 51.9 62.6 1 15 0.28 2.5e+02 1.7 0.1 3 12 170 179 169 182 0.82 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF555-201 - 628 5e-14 51.9 62.6 2 15 0.12 1.1e+02 2.8 0.0 3 14 198 209 197 214 0.87 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF555-201 - 628 5e-14 51.9 62.6 3 15 0.0049 4.4 7.3 0.3 2 15 225 238 224 242 0.89 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF555-201 - 628 5e-14 51.9 62.6 4 15 0.0016 1.4 8.9 3.7 3 40 254 290 252 293 0.88 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF555-201 - 628 5e-14 51.9 62.6 5 15 0.032 29 4.7 0.3 3 17 282 296 280 298 0.83 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF555-201 - 628 5e-14 51.9 62.6 6 15 0.012 11 6.0 0.1 3 17 310 324 308 326 0.83 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF555-201 - 628 5e-14 51.9 62.6 7 15 0.0014 1.2 9.0 0.1 3 17 338 352 336 355 0.88 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF555-201 - 628 5e-14 51.9 62.6 8 15 0.0015 1.3 9.0 0.1 3 17 366 380 364 385 0.89 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF555-201 - 628 5e-14 51.9 62.6 9 15 0.1 91 3.1 0.0 3 14 394 405 392 409 0.87 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF555-201 - 628 5e-14 51.9 62.6 10 15 0.0032 2.8 7.9 0.0 3 16 422 435 420 443 0.89 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF555-201 - 628 5e-14 51.9 62.6 11 15 0.024 22 5.1 0.4 2 15 449 462 448 466 0.83 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF555-201 - 628 5e-14 51.9 62.6 12 15 0.018 17 5.4 0.2 1 15 476 490 476 501 0.85 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF555-201 - 628 5e-14 51.9 62.6 13 15 0.00034 0.3 11.0 3.2 3 39 506 541 504 543 0.91 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF555-201 - 628 5e-14 51.9 62.6 14 15 0.016 15 5.6 0.3 3 16 534 547 532 550 0.85 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF555-201 - 628 5e-14 51.9 62.6 15 15 0.046 41 4.2 0.5 3 14 562 573 560 578 0.87 Probable zinc-ribbon domain Zn_ribbon_SprT PF17283.2 38 ZNF555-201 - 628 8e-09 35.3 88.6 1 12 0.022 20 5.2 8.3 5 33 172 208 171 210 0.73 SprT-like zinc ribbon domain Zn_ribbon_SprT PF17283.2 38 ZNF555-201 - 628 8e-09 35.3 88.6 2 12 1.2e-05 0.011 15.6 2.5 5 32 200 236 199 242 0.90 SprT-like zinc ribbon domain Zn_ribbon_SprT PF17283.2 38 ZNF555-201 - 628 8e-09 35.3 88.6 3 12 3.7e-06 0.0033 17.3 3.5 5 35 256 294 255 297 0.94 SprT-like zinc ribbon domain Zn_ribbon_SprT PF17283.2 38 ZNF555-201 - 628 8e-09 35.3 88.6 4 12 0.00013 0.12 12.4 1.9 5 35 284 322 282 325 0.94 SprT-like zinc ribbon domain Zn_ribbon_SprT PF17283.2 38 ZNF555-201 - 628 8e-09 35.3 88.6 5 12 6.1e-05 0.055 13.4 1.1 5 35 312 350 311 353 0.92 SprT-like zinc ribbon domain Zn_ribbon_SprT PF17283.2 38 ZNF555-201 - 628 8e-09 35.3 88.6 6 12 7.4e-06 0.0067 16.3 1.9 5 34 340 377 339 381 0.94 SprT-like zinc ribbon domain Zn_ribbon_SprT PF17283.2 38 ZNF555-201 - 628 8e-09 35.3 88.6 7 12 0.0062 5.6 7.0 0.3 5 23 368 386 367 387 0.94 SprT-like zinc ribbon domain Zn_ribbon_SprT PF17283.2 38 ZNF555-201 - 628 8e-09 35.3 88.6 8 12 2.6e-06 0.0023 17.8 1.7 5 34 396 433 395 434 0.95 SprT-like zinc ribbon domain Zn_ribbon_SprT PF17283.2 38 ZNF555-201 - 628 8e-09 35.3 88.6 9 12 0.054 48 4.0 0.3 21 35 444 462 439 465 0.79 SprT-like zinc ribbon domain Zn_ribbon_SprT PF17283.2 38 ZNF555-201 - 628 8e-09 35.3 88.6 10 12 0.16 1.4e+02 2.5 6.3 5 32 480 515 479 518 0.77 SprT-like zinc ribbon domain Zn_ribbon_SprT PF17283.2 38 ZNF555-201 - 628 8e-09 35.3 88.6 11 12 0.35 3.1e+02 1.4 0.1 20 34 527 545 526 547 0.84 SprT-like zinc ribbon domain Zn_ribbon_SprT PF17283.2 38 ZNF555-201 - 628 8e-09 35.3 88.6 12 12 0.13 1.2e+02 2.7 4.1 5 27 564 594 556 595 0.80 SprT-like zinc ribbon domain zf_UBZ PF18439.1 32 ZNF555-201 - 628 6e-07 29.0 73.1 1 15 0.042 37 4.0 1.0 3 12 172 181 170 187 0.83 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF555-201 - 628 6e-07 29.0 73.1 2 15 0.011 10 5.8 0.0 3 16 200 214 198 218 0.82 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF555-201 - 628 6e-07 29.0 73.1 3 15 0.00097 0.87 9.2 0.1 2 20 227 246 226 247 0.88 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF555-201 - 628 6e-07 29.0 73.1 4 15 0.013 12 5.6 0.1 3 13 256 266 254 274 0.86 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF555-201 - 628 6e-07 29.0 73.1 5 15 0.4 3.6e+02 0.9 0.1 3 13 284 294 282 302 0.83 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF555-201 - 628 6e-07 29.0 73.1 6 15 0.1 93 2.7 0.1 3 13 312 322 310 331 0.80 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF555-201 - 628 6e-07 29.0 73.1 7 15 0.03 27 4.5 0.2 3 12 340 349 338 354 0.89 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF555-201 - 628 6e-07 29.0 73.1 8 15 0.02 18 5.0 0.2 3 13 368 378 366 387 0.82 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF555-201 - 628 6e-07 29.0 73.1 9 15 0.019 17 5.1 0.1 3 15 396 408 394 415 0.83 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF555-201 - 628 6e-07 29.0 73.1 10 15 0.022 20 4.9 0.1 3 12 424 433 422 442 0.87 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF555-201 - 628 6e-07 29.0 73.1 11 15 0.0073 6.5 6.4 0.7 3 20 452 470 450 470 0.84 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF555-201 - 628 6e-07 29.0 73.1 12 15 0.047 42 3.8 0.9 2 21 479 499 478 507 0.88 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF555-201 - 628 6e-07 29.0 73.1 13 15 0.0042 3.8 7.2 0.3 3 18 508 524 506 526 0.77 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF555-201 - 628 6e-07 29.0 73.1 14 15 0.015 13 5.4 0.1 3 13 536 546 534 555 0.82 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF555-201 - 628 6e-07 29.0 73.1 15 15 0.042 38 4.0 0.7 3 15 564 576 562 582 0.82 Ubiquitin-Binding Zinc Finger zinc_ribbon_15 PF17032.5 86 ZNF555-201 - 628 8e-07 29.7 68.8 1 12 0.0029 2.6 8.9 1.7 32 76 166 210 161 215 0.86 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF555-201 - 628 8e-07 29.7 68.8 2 12 0.00018 0.16 12.8 1.9 30 81 220 271 215 275 0.90 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF555-201 - 628 8e-07 29.7 68.8 3 12 0.0023 2 9.2 2.5 35 81 281 327 274 330 0.86 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF555-201 - 628 8e-07 29.7 68.8 4 12 0.013 12 6.8 1.5 35 75 337 377 321 386 0.75 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF555-201 - 628 8e-07 29.7 68.8 5 12 0.046 41 5.0 5.5 31 79 361 409 340 414 0.75 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF555-201 - 628 8e-07 29.7 68.8 6 12 0.0022 1.9 9.3 0.8 36 75 394 433 387 439 0.88 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF555-201 - 628 8e-07 29.7 68.8 7 12 0.0014 1.3 9.8 3.2 30 76 416 462 413 468 0.87 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF555-201 - 628 8e-07 29.7 68.8 8 12 0.041 36 5.2 5.3 32 74 446 488 441 495 0.86 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF555-201 - 628 8e-07 29.7 68.8 9 12 0.00095 0.85 10.4 4.1 21 74 463 516 460 521 0.92 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF555-201 - 628 8e-07 29.7 68.8 10 12 0.00083 0.74 10.6 3.5 29 75 499 545 490 551 0.85 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF555-201 - 628 8e-07 29.7 68.8 11 12 0.011 10 7.0 2.7 35 77 533 575 523 582 0.86 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF555-201 - 628 8e-07 29.7 68.8 12 12 0.053 48 4.8 1.0 31 69 557 595 550 603 0.84 zinc-ribbon family # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF555-201.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF555-201.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF555-201.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF555-201.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF555-201.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:08:51 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF555-202.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF555-202.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF555-202.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF555-202.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF555-202.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:08:51 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZNF555-203 - 627 1.9e-126 407.4 138.9 1 16 6.5e-06 0.0056 17.1 1.5 8 25 164 181 162 182 0.89 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF555-203 - 627 1.9e-126 407.4 138.9 2 16 5.4e-10 4.6e-07 30.0 1.9 1 24 185 208 185 210 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF555-203 - 627 1.9e-126 407.4 138.9 3 16 2.6e-10 2.2e-07 31.0 0.2 1 24 213 236 213 237 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF555-203 - 627 1.9e-126 407.4 138.9 4 16 2.8e-12 2.4e-09 37.2 1.5 1 25 241 265 241 266 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF555-203 - 627 1.9e-126 407.4 138.9 5 16 2.2e-10 1.9e-07 31.2 2.2 2 25 270 293 269 294 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF555-203 - 627 1.9e-126 407.4 138.9 6 16 1.1e-10 9.3e-08 32.2 2.6 2 25 298 321 297 322 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF555-203 - 627 1.9e-126 407.4 138.9 7 16 9.2e-13 7.8e-10 38.7 1.0 1 24 325 348 325 350 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF555-203 - 627 1.9e-126 407.4 138.9 8 16 3.3e-12 2.8e-09 37.0 1.6 2 24 354 376 353 378 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF555-203 - 627 1.9e-126 407.4 138.9 9 16 7.8e-11 6.7e-08 32.6 2.1 2 26 382 406 381 406 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF555-203 - 627 1.9e-126 407.4 138.9 10 16 4.7e-12 4e-09 36.5 1.3 2 25 410 433 409 433 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF555-203 - 627 1.9e-126 407.4 138.9 11 16 3.7e-12 3.2e-09 36.8 2.2 1 25 437 461 437 461 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF555-203 - 627 1.9e-126 407.4 138.9 12 16 9.6e-07 0.00082 19.7 3.5 3 24 467 488 466 490 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF555-203 - 627 1.9e-126 407.4 138.9 13 16 3e-10 2.5e-07 30.8 1.5 1 25 493 517 493 517 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF555-203 - 627 1.9e-126 407.4 138.9 14 16 2.7e-11 2.3e-08 34.1 1.5 2 25 522 545 522 545 0.97 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF555-203 - 627 1.9e-126 407.4 138.9 15 16 2.4e-10 2.1e-07 31.1 4.2 5 25 553 573 552 574 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF555-203 - 627 1.9e-126 407.4 138.9 16 16 4.8e-06 0.0041 17.5 0.7 1 18 577 594 577 606 0.95 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZNF555-203 - 627 5.2e-71 231.3 130.5 1 15 7.5e-05 0.064 13.7 4.6 1 23 171 193 171 193 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF555-203 - 627 5.2e-71 231.3 130.5 2 15 2.3e-09 1.9e-06 28.0 0.9 1 23 199 221 199 221 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF555-203 - 627 5.2e-71 231.3 130.5 3 15 3.9e-08 3.4e-05 24.1 0.7 1 23 227 249 227 249 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF555-203 - 627 5.2e-71 231.3 130.5 4 15 7.7e-08 6.5e-05 23.2 2.6 1 23 255 277 255 277 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF555-203 - 627 5.2e-71 231.3 130.5 5 15 1.3e-06 0.0011 19.3 1.5 1 23 283 305 283 305 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF555-203 - 627 5.2e-71 231.3 130.5 6 15 7.6e-08 6.5e-05 23.2 2.0 1 23 311 333 311 333 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF555-203 - 627 5.2e-71 231.3 130.5 7 15 1.8e-06 0.0016 18.8 1.5 1 23 339 361 339 361 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF555-203 - 627 5.2e-71 231.3 130.5 8 15 2.3e-07 0.0002 21.7 1.9 1 23 367 389 367 389 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF555-203 - 627 5.2e-71 231.3 130.5 9 15 1.6e-08 1.4e-05 25.3 1.6 1 23 395 417 395 417 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF555-203 - 627 5.2e-71 231.3 130.5 10 15 8.9e-08 7.6e-05 23.0 1.0 1 23 423 445 423 445 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF555-203 - 627 5.2e-71 231.3 130.5 11 15 2e-05 0.017 15.5 1.9 1 23 451 473 451 473 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF555-203 - 627 5.2e-71 231.3 130.5 12 15 5.5e-05 0.047 14.2 5.4 1 23 479 501 479 501 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF555-203 - 627 5.2e-71 231.3 130.5 13 15 3.1e-07 0.00026 21.3 0.3 1 23 507 529 507 529 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF555-203 - 627 5.2e-71 231.3 130.5 14 15 1.9e-06 0.0016 18.8 0.1 1 23 535 557 535 557 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF555-203 - 627 5.2e-71 231.3 130.5 15 15 1.9e-06 0.0016 18.8 5.3 1 23 563 585 563 585 0.99 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZNF555-203 - 627 1.7e-57 187.0 124.0 1 15 1.9e-05 0.016 16.0 3.6 1 23 171 193 171 194 0.97 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF555-203 - 627 1.7e-57 187.0 124.0 2 15 5e-07 0.00042 20.9 0.6 1 23 199 221 199 222 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF555-203 - 627 1.7e-57 187.0 124.0 3 15 4.5e-06 0.0039 17.9 0.7 1 23 227 249 227 250 0.97 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF555-203 - 627 1.7e-57 187.0 124.0 4 15 7.2e-06 0.0061 17.3 1.7 1 23 255 277 255 278 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF555-203 - 627 1.7e-57 187.0 124.0 5 15 7.7e-06 0.0066 17.2 1.3 1 23 283 305 283 306 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF555-203 - 627 1.7e-57 187.0 124.0 6 15 1.3e-06 0.0011 19.6 1.7 1 23 311 333 311 334 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF555-203 - 627 1.7e-57 187.0 124.0 7 15 5.1e-06 0.0044 17.7 1.1 1 23 339 361 339 362 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF555-203 - 627 1.7e-57 187.0 124.0 8 15 5.6e-07 0.00048 20.7 0.8 1 23 367 389 367 390 0.97 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF555-203 - 627 1.7e-57 187.0 124.0 9 15 5.5e-06 0.0047 17.6 1.3 1 23 395 417 395 418 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF555-203 - 627 1.7e-57 187.0 124.0 10 15 6.1e-06 0.0052 17.5 0.8 1 23 423 445 423 446 0.88 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF555-203 - 627 1.7e-57 187.0 124.0 11 15 3.3e-05 0.028 15.2 1.8 1 23 451 473 451 474 0.88 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF555-203 - 627 1.7e-57 187.0 124.0 12 15 2.6e-05 0.023 15.5 4.6 1 23 479 501 479 502 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF555-203 - 627 1.7e-57 187.0 124.0 13 15 2.6e-06 0.0022 18.6 0.6 1 23 507 529 507 530 0.89 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF555-203 - 627 1.7e-57 187.0 124.0 14 15 0.001 0.85 10.6 0.3 1 23 535 557 535 558 0.90 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF555-203 - 627 1.7e-57 187.0 124.0 15 15 3e-07 0.00026 21.6 4.4 1 23 563 585 563 586 0.96 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF555-203 - 627 1.9e-30 104.3 115.0 1 15 0.36 3.1e+02 1.5 3.3 2 24 171 193 171 196 0.83 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF555-203 - 627 1.9e-30 104.3 115.0 2 15 2.7e-05 0.023 14.7 0.1 2 22 199 219 199 224 0.88 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF555-203 - 627 1.9e-30 104.3 115.0 3 15 1.4e-06 0.0012 18.8 0.8 2 24 227 249 226 252 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF555-203 - 627 1.9e-30 104.3 115.0 4 15 0.00057 0.49 10.5 1.5 2 13 255 266 255 279 0.81 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF555-203 - 627 1.9e-30 104.3 115.0 5 15 0.0072 6.1 7.0 1.3 2 24 283 305 283 308 0.88 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF555-203 - 627 1.9e-30 104.3 115.0 6 15 2.6e-05 0.022 14.7 2.0 2 24 311 333 311 336 0.95 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF555-203 - 627 1.9e-30 104.3 115.0 7 15 7.6e-06 0.0065 16.4 0.9 2 22 339 359 339 363 0.89 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF555-203 - 627 1.9e-30 104.3 115.0 8 15 2.7e-05 0.023 14.7 0.9 2 24 367 389 367 392 0.95 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF555-203 - 627 1.9e-30 104.3 115.0 9 15 0.00016 0.13 12.3 1.2 2 24 395 417 395 420 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF555-203 - 627 1.9e-30 104.3 115.0 10 15 2.1e-07 0.00018 21.4 0.4 2 25 423 446 423 448 0.95 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF555-203 - 627 1.9e-30 104.3 115.0 11 15 0.0017 1.5 9.0 0.9 2 12 451 461 451 461 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF555-203 - 627 1.9e-30 104.3 115.0 12 15 0.0036 3.1 7.9 4.7 2 25 479 502 478 504 0.92 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF555-203 - 627 1.9e-30 104.3 115.0 13 15 0.0013 1.1 9.3 0.6 2 12 507 517 506 517 0.92 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF555-203 - 627 1.9e-30 104.3 115.0 14 15 0.00011 0.095 12.7 0.1 2 12 535 545 535 557 0.91 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF555-203 - 627 1.9e-30 104.3 115.0 15 15 0.13 1.1e+02 2.9 2.8 2 18 563 579 563 585 0.78 C2H2-type zinc finger KRAB PF01352.27 42 ZNF555-203 - 627 6.3e-24 83.4 1.0 1 1 1.3e-26 1.1e-23 82.6 1.0 1 42 3 44 3 44 0.98 KRAB box zf-C2H2_11 PF16622.5 29 ZNF555-203 - 627 7.6e-23 80.0 87.7 1 15 0.0039 3.4 7.5 3.9 5 25 171 191 169 193 0.91 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF555-203 - 627 7.6e-23 80.0 87.7 2 15 0.00011 0.097 12.4 0.5 7 26 201 220 199 221 0.95 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF555-203 - 627 7.6e-23 80.0 87.7 3 15 0.042 36 4.2 0.3 3 24 225 246 224 248 0.81 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF555-203 - 627 7.6e-23 80.0 87.7 4 15 0.00069 0.59 9.9 0.2 5 26 255 275 252 277 0.88 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF555-203 - 627 7.6e-23 80.0 87.7 5 15 0.0067 5.7 6.8 0.2 5 25 283 303 280 305 0.91 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF555-203 - 627 7.6e-23 80.0 87.7 6 15 4.3e-05 0.036 13.8 0.3 5 25 311 331 308 333 0.90 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF555-203 - 627 7.6e-23 80.0 87.7 7 15 0.026 22 4.9 0.4 6 26 340 360 337 361 0.91 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF555-203 - 627 7.6e-23 80.0 87.7 8 15 0.029 25 4.8 0.1 6 23 368 385 365 388 0.91 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF555-203 - 627 7.6e-23 80.0 87.7 9 15 0.0041 3.5 7.5 0.4 6 26 396 416 393 417 0.91 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF555-203 - 627 7.6e-23 80.0 87.7 10 15 2.3e-05 0.02 14.7 0.1 6 25 424 443 421 445 0.93 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF555-203 - 627 7.6e-23 80.0 87.7 11 15 0.044 37 4.2 1.0 6 26 452 472 449 473 0.89 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF555-203 - 627 7.6e-23 80.0 87.7 12 15 2.6e-05 0.022 14.5 1.1 4 25 478 499 475 499 0.92 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF555-203 - 627 7.6e-23 80.0 87.7 13 15 0.013 11 5.8 0.3 5 24 507 526 505 529 0.88 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF555-203 - 627 7.6e-23 80.0 87.7 14 15 0.096 82 3.1 0.0 6 25 536 555 534 557 0.88 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF555-203 - 627 7.6e-23 80.0 87.7 15 15 1.3e-06 0.0011 18.7 2.6 5 26 563 584 560 585 0.95 zinc-finger C2H2-type zf-C2H2_jaz PF12171.8 27 ZNF555-203 - 627 1.4e-21 76.3 70.6 1 14 0.0012 0.98 9.8 0.0 2 22 199 219 198 219 0.90 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF555-203 - 627 1.4e-21 76.3 70.6 2 14 0.00051 0.44 10.9 0.7 2 24 227 249 226 249 0.96 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF555-203 - 627 1.4e-21 76.3 70.6 3 14 0.0035 3 8.2 0.5 2 21 255 274 254 277 0.90 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF555-203 - 627 1.4e-21 76.3 70.6 4 14 0.0051 4.4 7.7 3.3 2 27 283 312 282 312 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF555-203 - 627 1.4e-21 76.3 70.6 5 14 0.042 36 4.8 0.4 2 23 311 332 310 333 0.90 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF555-203 - 627 1.4e-21 76.3 70.6 6 14 0.0019 1.6 9.1 0.2 2 22 339 359 338 359 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF555-203 - 627 1.4e-21 76.3 70.6 7 14 3.4e-05 0.029 14.7 0.1 2 24 367 389 366 390 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF555-203 - 627 1.4e-21 76.3 70.6 8 14 0.0017 1.5 9.2 0.0 2 22 395 415 394 415 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF555-203 - 627 1.4e-21 76.3 70.6 9 14 0.00025 0.22 11.9 0.1 2 24 423 445 422 445 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF555-203 - 627 1.4e-21 76.3 70.6 10 14 0.38 3.2e+02 1.8 0.7 2 12 451 461 450 471 0.81 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF555-203 - 627 1.4e-21 76.3 70.6 11 14 0.01 8.5 6.8 2.6 2 22 479 499 478 499 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF555-203 - 627 1.4e-21 76.3 70.6 12 14 0.0029 2.5 8.5 0.2 2 24 507 529 506 529 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF555-203 - 627 1.4e-21 76.3 70.6 13 14 0.0085 7.3 7.0 0.0 2 20 535 553 534 555 0.78 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF555-203 - 627 1.4e-21 76.3 70.6 14 14 0.0052 4.4 7.7 0.7 4 22 565 583 562 583 0.90 Zinc-finger double-stranded RNA-binding Zn-ribbon_8 PF09723.10 40 ZNF555-203 - 627 1.9e-15 56.7 87.0 1 14 0.025 22 5.3 5.4 6 38 171 210 170 211 0.76 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF555-203 - 627 1.9e-15 56.7 87.0 2 14 8.6e-05 0.074 13.2 1.9 6 34 199 234 198 237 0.90 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF555-203 - 627 1.9e-15 56.7 87.0 3 14 0.00081 0.69 10.1 5.5 6 34 227 262 225 265 0.79 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF555-203 - 627 1.9e-15 56.7 87.0 4 14 0.0054 4.6 7.5 0.7 6 16 255 265 254 280 0.82 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF555-203 - 627 1.9e-15 56.7 87.0 5 14 0.00013 0.11 12.7 3.4 6 34 283 318 282 321 0.89 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF555-203 - 627 1.9e-15 56.7 87.0 6 14 0.00012 0.099 12.8 5.6 6 34 339 374 338 376 0.84 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF555-203 - 627 1.9e-15 56.7 87.0 7 14 0.011 9.1 6.5 6.7 6 34 367 402 366 402 0.70 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF555-203 - 627 1.9e-15 56.7 87.0 8 14 0.00087 0.74 10.0 5.4 6 34 395 430 393 431 0.84 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF555-203 - 627 1.9e-15 56.7 87.0 9 14 8.5e-06 0.0072 16.4 2.8 6 34 423 458 421 463 0.81 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF555-203 - 627 1.9e-15 56.7 87.0 10 14 0.00088 0.75 10.0 5.8 6 34 451 486 449 489 0.90 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF555-203 - 627 1.9e-15 56.7 87.0 11 14 0.002 1.7 8.8 5.2 6 34 479 514 477 517 0.76 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF555-203 - 627 1.9e-15 56.7 87.0 12 14 0.0046 3.9 7.7 0.2 6 16 507 517 506 530 0.82 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF555-203 - 627 1.9e-15 56.7 87.0 13 14 6.7e-06 0.0057 16.7 2.1 6 34 535 570 534 582 0.84 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF555-203 - 627 1.9e-15 56.7 87.0 14 14 0.0092 7.9 6.7 1.1 6 22 563 585 562 598 0.69 Zinc ribbon domain zf-trcl PF13451.6 48 ZNF555-203 - 627 5.6e-14 51.8 62.8 1 15 0.29 2.5e+02 1.7 0.1 3 12 169 178 168 181 0.82 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF555-203 - 627 5.6e-14 51.8 62.8 2 15 0.13 1.1e+02 2.8 0.0 3 14 197 208 196 213 0.87 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF555-203 - 627 5.6e-14 51.8 62.8 3 15 0.0051 4.3 7.3 0.3 2 15 224 237 223 241 0.89 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF555-203 - 627 5.6e-14 51.8 62.8 4 15 0.0017 1.4 8.8 3.8 3 40 253 289 251 292 0.88 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF555-203 - 627 5.6e-14 51.8 62.8 5 15 0.034 29 4.7 0.3 3 17 281 295 279 297 0.83 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF555-203 - 627 5.6e-14 51.8 62.8 6 15 0.013 11 6.0 0.1 3 17 309 323 307 325 0.83 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF555-203 - 627 5.6e-14 51.8 62.8 7 15 0.0014 1.2 9.1 0.1 3 17 337 351 335 354 0.88 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF555-203 - 627 5.6e-14 51.8 62.8 8 15 0.0015 1.3 9.0 0.1 3 17 365 379 363 384 0.89 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF555-203 - 627 5.6e-14 51.8 62.8 9 15 0.11 91 3.1 0.0 3 14 393 404 391 408 0.87 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF555-203 - 627 5.6e-14 51.8 62.8 10 15 0.0033 2.8 7.9 0.0 3 16 421 434 419 442 0.89 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF555-203 - 627 5.6e-14 51.8 62.8 11 15 0.025 22 5.1 0.4 2 15 448 461 447 465 0.83 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF555-203 - 627 5.6e-14 51.8 62.8 12 15 0.019 16 5.4 0.2 1 15 475 489 475 500 0.85 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF555-203 - 627 5.6e-14 51.8 62.8 13 15 0.00038 0.32 10.9 3.3 3 39 505 540 503 542 0.91 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF555-203 - 627 5.6e-14 51.8 62.8 14 15 0.017 15 5.6 0.3 3 16 533 546 531 549 0.85 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF555-203 - 627 5.6e-14 51.8 62.8 15 15 0.048 41 4.2 0.5 3 14 561 572 559 577 0.87 Probable zinc-ribbon domain Zn_ribbon_SprT PF17283.2 38 ZNF555-203 - 627 7.9e-09 35.3 88.6 1 12 0.023 20 5.2 8.3 5 33 171 207 170 209 0.73 SprT-like zinc ribbon domain Zn_ribbon_SprT PF17283.2 38 ZNF555-203 - 627 7.9e-09 35.3 88.6 2 12 1.3e-05 0.011 15.6 2.5 5 32 199 235 198 241 0.90 SprT-like zinc ribbon domain Zn_ribbon_SprT PF17283.2 38 ZNF555-203 - 627 7.9e-09 35.3 88.6 3 12 3.8e-06 0.0033 17.3 3.5 5 35 255 293 254 296 0.94 SprT-like zinc ribbon domain Zn_ribbon_SprT PF17283.2 38 ZNF555-203 - 627 7.9e-09 35.3 88.6 4 12 0.00013 0.11 12.4 1.9 5 35 283 321 281 324 0.94 SprT-like zinc ribbon domain Zn_ribbon_SprT PF17283.2 38 ZNF555-203 - 627 7.9e-09 35.3 88.6 5 12 6.4e-05 0.054 13.4 1.1 5 35 311 349 310 352 0.92 SprT-like zinc ribbon domain Zn_ribbon_SprT PF17283.2 38 ZNF555-203 - 627 7.9e-09 35.3 88.6 6 12 7.8e-06 0.0067 16.3 1.9 5 34 339 376 338 380 0.94 SprT-like zinc ribbon domain Zn_ribbon_SprT PF17283.2 38 ZNF555-203 - 627 7.9e-09 35.3 88.6 7 12 0.0065 5.6 7.0 0.3 5 23 367 385 366 386 0.94 SprT-like zinc ribbon domain Zn_ribbon_SprT PF17283.2 38 ZNF555-203 - 627 7.9e-09 35.3 88.6 8 12 2.7e-06 0.0023 17.8 1.7 5 34 395 432 394 433 0.95 SprT-like zinc ribbon domain Zn_ribbon_SprT PF17283.2 38 ZNF555-203 - 627 7.9e-09 35.3 88.6 9 12 0.057 48 4.0 0.3 21 35 443 461 438 464 0.79 SprT-like zinc ribbon domain Zn_ribbon_SprT PF17283.2 38 ZNF555-203 - 627 7.9e-09 35.3 88.6 10 12 0.16 1.4e+02 2.5 6.3 5 32 479 514 478 517 0.77 SprT-like zinc ribbon domain Zn_ribbon_SprT PF17283.2 38 ZNF555-203 - 627 7.9e-09 35.3 88.6 11 12 0.37 3.1e+02 1.4 0.1 20 34 526 544 525 546 0.84 SprT-like zinc ribbon domain Zn_ribbon_SprT PF17283.2 38 ZNF555-203 - 627 7.9e-09 35.3 88.6 12 12 0.14 1.2e+02 2.7 4.1 5 27 563 593 555 594 0.80 SprT-like zinc ribbon domain zf_UBZ PF18439.1 32 ZNF555-203 - 627 5.8e-07 29.0 73.1 1 15 0.044 37 4.0 1.0 3 12 171 180 169 186 0.83 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF555-203 - 627 5.8e-07 29.0 73.1 2 15 0.012 10 5.8 0.0 3 16 199 213 197 217 0.82 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF555-203 - 627 5.8e-07 29.0 73.1 3 15 0.001 0.87 9.2 0.1 2 20 226 245 225 246 0.88 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF555-203 - 627 5.8e-07 29.0 73.1 4 15 0.014 12 5.6 0.1 3 13 255 265 253 273 0.86 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF555-203 - 627 5.8e-07 29.0 73.1 5 15 0.42 3.6e+02 0.9 0.1 3 13 283 293 281 301 0.83 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF555-203 - 627 5.8e-07 29.0 73.1 6 15 0.11 93 2.7 0.1 3 13 311 321 309 330 0.80 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF555-203 - 627 5.8e-07 29.0 73.1 7 15 0.032 27 4.5 0.2 3 12 339 348 337 353 0.89 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF555-203 - 627 5.8e-07 29.0 73.1 8 15 0.021 18 5.0 0.2 3 13 367 377 365 386 0.82 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF555-203 - 627 5.8e-07 29.0 73.1 9 15 0.02 17 5.1 0.1 3 15 395 407 393 414 0.83 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF555-203 - 627 5.8e-07 29.0 73.1 10 15 0.023 20 4.9 0.1 3 12 423 432 421 441 0.87 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF555-203 - 627 5.8e-07 29.0 73.1 11 15 0.0077 6.5 6.4 0.7 3 20 451 469 449 469 0.84 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF555-203 - 627 5.8e-07 29.0 73.1 12 15 0.05 42 3.8 0.9 2 21 478 498 477 506 0.88 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF555-203 - 627 5.8e-07 29.0 73.1 13 15 0.0044 3.8 7.2 0.3 3 18 507 523 505 525 0.77 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF555-203 - 627 5.8e-07 29.0 73.1 14 15 0.016 13 5.4 0.1 3 13 535 545 533 554 0.82 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF555-203 - 627 5.8e-07 29.0 73.1 15 15 0.044 38 4.0 0.7 3 15 563 575 561 581 0.82 Ubiquitin-Binding Zinc Finger zinc_ribbon_15 PF17032.5 86 ZNF555-203 - 627 8.2e-07 29.7 68.8 1 12 0.003 2.6 8.9 1.7 32 76 165 209 160 214 0.86 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF555-203 - 627 8.2e-07 29.7 68.8 2 12 0.00018 0.16 12.8 1.9 30 81 219 270 214 274 0.90 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF555-203 - 627 8.2e-07 29.7 68.8 3 12 0.0024 2 9.2 2.5 35 81 280 326 273 329 0.86 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF555-203 - 627 8.2e-07 29.7 68.8 4 12 0.013 11 6.8 1.4 35 75 336 376 320 385 0.75 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF555-203 - 627 8.2e-07 29.7 68.8 5 12 0.048 41 5.0 5.5 31 79 360 408 339 413 0.75 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF555-203 - 627 8.2e-07 29.7 68.8 6 12 0.0023 2 9.2 0.8 36 75 393 432 386 438 0.88 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF555-203 - 627 8.2e-07 29.7 68.8 7 12 0.0015 1.3 9.8 3.2 30 76 415 461 412 467 0.87 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF555-203 - 627 8.2e-07 29.7 68.8 8 12 0.042 36 5.2 5.2 32 74 445 487 440 494 0.86 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF555-203 - 627 8.2e-07 29.7 68.8 9 12 0.00099 0.84 10.4 4.1 21 74 462 515 459 520 0.92 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF555-203 - 627 8.2e-07 29.7 68.8 10 12 0.00087 0.74 10.6 3.5 29 75 498 544 489 550 0.85 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF555-203 - 627 8.2e-07 29.7 68.8 11 12 0.012 11 6.9 2.8 35 77 532 574 522 581 0.86 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF555-203 - 627 8.2e-07 29.7 68.8 12 12 0.058 49 4.8 1.0 31 69 556 594 549 602 0.84 zinc-ribbon family # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF555-203.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF555-203.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF555-203.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF555-203.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF555-203.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:08:52 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZNF556-201 - 456 1.3e-46 155.0 87.2 1 11 0.0064 7.7 7.1 6.7 3 26 133 158 131 158 0.84 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF556-201 - 456 1.3e-46 155.0 87.2 2 11 7.8e-09 9.3e-06 25.8 0.9 2 25 162 185 161 186 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF556-201 - 456 1.3e-46 155.0 87.2 3 11 8.1e-10 9.7e-07 28.9 0.9 2 25 190 213 189 214 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF556-201 - 456 1.3e-46 155.0 87.2 4 11 6.5e-11 7.8e-08 32.4 1.0 1 25 217 241 217 242 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF556-201 - 456 1.3e-46 155.0 87.2 5 11 2.2e-06 0.0026 18.1 2.5 2 25 246 269 245 270 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF556-201 - 456 1.3e-46 155.0 87.2 6 11 3.1e-07 0.00037 20.8 0.2 2 24 274 296 273 296 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF556-201 - 456 1.3e-46 155.0 87.2 7 11 5.1e-11 6.1e-08 32.8 0.6 2 24 302 324 301 325 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF556-201 - 456 1.3e-46 155.0 87.2 8 11 0.36 4.3e+02 1.6 0.9 3 15 331 343 329 344 0.85 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF556-201 - 456 1.3e-46 155.0 87.2 9 11 0.00029 0.35 11.4 0.6 7 24 362 379 361 380 0.89 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF556-201 - 456 1.3e-46 155.0 87.2 10 11 1.4e-06 0.0016 18.8 4.8 3 25 386 435 384 436 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF556-201 - 456 1.3e-46 155.0 87.2 11 11 0.023 28 5.4 0.5 3 13 441 451 439 454 0.84 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZNF556-201 - 456 5.2e-30 102.2 84.5 1 10 0.75 8.9e+02 0.7 0.4 7 22 123 138 123 138 0.90 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF556-201 - 456 5.2e-30 102.2 84.5 2 10 3.5e-07 0.00042 20.6 2.3 1 23 147 169 147 169 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF556-201 - 456 5.2e-30 102.2 84.5 3 10 1.4e-09 1.7e-06 28.2 1.3 1 23 175 197 175 197 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF556-201 - 456 5.2e-30 102.2 84.5 4 10 1.2e-05 0.014 15.8 2.3 1 23 203 225 203 225 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF556-201 - 456 5.2e-30 102.2 84.5 5 10 6e-05 0.071 13.6 1.2 1 23 231 253 231 253 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF556-201 - 456 5.2e-30 102.2 84.5 6 10 1.5e-05 0.018 15.5 5.5 1 23 259 281 259 281 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF556-201 - 456 5.2e-30 102.2 84.5 7 10 7.5e-05 0.09 13.3 1.5 1 23 287 309 287 309 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF556-201 - 456 5.2e-30 102.2 84.5 8 10 8.2e-07 0.00099 19.4 0.8 1 23 315 337 315 337 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF556-201 - 456 5.2e-30 102.2 84.5 9 10 3.4e-05 0.041 14.3 2.6 1 23 370 392 370 392 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF556-201 - 456 5.2e-30 102.2 84.5 10 10 0.00034 0.41 11.2 1.7 2 23 426 447 425 447 0.97 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZNF556-201 - 456 2e-29 99.7 80.4 1 10 2.8 3.4e+03 -0.6 0.2 7 22 123 138 123 138 0.78 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF556-201 - 456 2e-29 99.7 80.4 2 10 7.3e-06 0.0087 16.8 2.2 1 23 147 169 147 170 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF556-201 - 456 2e-29 99.7 80.4 3 10 2.7e-07 0.00033 21.3 1.2 1 23 175 197 175 198 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF556-201 - 456 2e-29 99.7 80.4 4 10 6.3e-06 0.0075 17.0 1.9 1 23 203 225 203 226 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF556-201 - 456 2e-29 99.7 80.4 5 10 4.5e-07 0.00053 20.6 0.9 1 23 231 253 231 254 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF556-201 - 456 2e-29 99.7 80.4 6 10 4.3e-07 0.00051 20.7 4.0 1 23 259 281 259 282 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF556-201 - 456 2e-29 99.7 80.4 7 10 0.0002 0.24 12.3 1.8 1 23 287 309 287 310 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF556-201 - 456 2e-29 99.7 80.4 8 10 0.00052 0.62 11.1 0.7 1 23 315 337 315 338 0.87 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF556-201 - 456 2e-29 99.7 80.4 9 10 0.0008 0.95 10.5 2.2 1 23 370 392 370 393 0.91 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF556-201 - 456 2e-29 99.7 80.4 10 10 1.8e-06 0.0022 18.7 2.0 2 23 426 447 425 448 0.96 C2H2-type zinc finger KRAB PF01352.27 42 ZNF556-201 - 456 6.8e-23 80.0 0.3 1 1 9.2e-26 1.1e-22 79.4 0.3 2 42 4 44 3 44 0.98 KRAB box zf-C2H2_jaz PF12171.8 27 ZNF556-201 - 456 3.5e-07 30.3 50.6 1 8 0.025 29 5.1 0.2 2 22 147 167 146 167 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF556-201 - 456 3.5e-07 30.3 50.6 2 8 6.8e-06 0.0081 16.4 0.9 2 24 175 197 174 198 0.95 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF556-201 - 456 3.5e-07 30.3 50.6 3 8 0.00011 0.13 12.6 0.1 2 24 203 225 202 225 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF556-201 - 456 3.5e-07 30.3 50.6 4 8 0.021 25 5.3 0.0 2 20 231 249 230 250 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF556-201 - 456 3.5e-07 30.3 50.6 5 8 0.0012 1.4 9.2 1.6 2 21 259 278 258 279 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF556-201 - 456 3.5e-07 30.3 50.6 6 8 0.93 1.1e+03 0.1 0.9 2 11 287 296 286 307 0.69 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF556-201 - 456 3.5e-07 30.3 50.6 7 8 0.0047 5.7 7.4 0.8 2 22 370 390 369 392 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF556-201 - 456 3.5e-07 30.3 50.6 8 8 0.0073 8.8 6.8 0.9 3 24 426 447 424 451 0.91 Zinc-finger double-stranded RNA-binding Zn-ribbon_8 PF09723.10 40 ZNF556-201 - 456 5.1e-07 29.7 48.8 1 9 7e-05 0.084 13.0 3.6 6 38 147 186 146 186 0.72 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF556-201 - 456 5.1e-07 29.7 48.8 2 9 0.00014 0.16 12.1 4.4 6 35 175 211 173 214 0.78 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF556-201 - 456 5.1e-07 29.7 48.8 3 9 0.0025 3 8.0 0.2 6 21 203 218 201 225 0.81 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF556-201 - 456 5.1e-07 29.7 48.8 4 9 0.0012 1.4 9.1 7.2 6 36 231 268 230 274 0.83 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF556-201 - 456 5.1e-07 29.7 48.8 5 9 0.0027 3.3 7.9 7.0 6 34 259 294 258 297 0.81 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF556-201 - 456 5.1e-07 29.7 48.8 6 9 0.016 19 5.5 6.0 6 34 287 322 286 325 0.83 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF556-201 - 456 5.1e-07 29.7 48.8 7 9 0.019 22 5.3 0.3 6 15 315 324 313 337 0.88 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF556-201 - 456 5.1e-07 29.7 48.8 8 9 0.014 17 5.6 0.2 6 15 370 379 369 391 0.86 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF556-201 - 456 5.1e-07 29.7 48.8 9 9 0.044 53 4.0 0.8 7 16 426 435 416 454 0.80 Zinc ribbon domain # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF556-201.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF556-201.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF556-201.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF556-201.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF556-201.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:08:52 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZNF556-202 - 455 1e-45 152.2 90.2 1 11 0.0064 7.6 7.1 6.7 3 26 132 157 130 157 0.84 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF556-202 - 455 1e-45 152.2 90.2 2 11 7.8e-09 9.3e-06 25.8 0.9 2 25 161 184 160 185 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF556-202 - 455 1e-45 152.2 90.2 3 11 8.1e-10 9.7e-07 29.0 0.9 2 25 189 212 188 213 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF556-202 - 455 1e-45 152.2 90.2 4 11 6.5e-11 7.7e-08 32.4 1.0 1 25 216 240 216 241 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF556-202 - 455 1e-45 152.2 90.2 5 11 2.2e-06 0.0026 18.1 2.5 2 25 245 268 244 269 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF556-202 - 455 1e-45 152.2 90.2 6 11 3.1e-07 0.00037 20.8 0.2 2 24 273 295 272 295 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF556-202 - 455 1e-45 152.2 90.2 7 11 5e-11 6e-08 32.8 0.6 2 24 301 323 300 324 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF556-202 - 455 1e-45 152.2 90.2 8 11 0.36 4.3e+02 1.6 0.9 3 15 330 342 328 343 0.85 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF556-202 - 455 1e-45 152.2 90.2 9 11 0.00029 0.35 11.4 0.6 7 24 361 378 360 379 0.89 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF556-202 - 455 1e-45 152.2 90.2 10 11 1.4e-06 0.0016 18.8 4.8 3 25 385 434 383 435 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF556-202 - 455 1e-45 152.2 90.2 11 11 0.023 28 5.4 0.5 3 13 440 450 438 453 0.84 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZNF556-202 - 455 5.5e-30 102.1 84.5 1 10 0.74 8.9e+02 0.7 0.4 7 22 122 137 122 137 0.90 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF556-202 - 455 5.5e-30 102.1 84.5 2 10 3.5e-07 0.00042 20.6 2.3 1 23 146 168 146 168 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF556-202 - 455 5.5e-30 102.1 84.5 3 10 1.4e-09 1.7e-06 28.2 1.3 1 23 174 196 174 196 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF556-202 - 455 5.5e-30 102.1 84.5 4 10 1.2e-05 0.014 15.8 2.3 1 23 202 224 202 224 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF556-202 - 455 5.5e-30 102.1 84.5 5 10 6e-05 0.071 13.6 1.2 1 23 230 252 230 252 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF556-202 - 455 5.5e-30 102.1 84.5 6 10 1.5e-05 0.018 15.5 5.5 1 23 258 280 258 280 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF556-202 - 455 5.5e-30 102.1 84.5 7 10 7.5e-05 0.089 13.3 1.5 1 23 286 308 286 308 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF556-202 - 455 5.5e-30 102.1 84.5 8 10 8.2e-07 0.00098 19.5 0.8 1 23 314 336 314 336 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF556-202 - 455 5.5e-30 102.1 84.5 9 10 3.4e-05 0.041 14.3 2.6 1 23 369 391 369 391 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF556-202 - 455 5.5e-30 102.1 84.5 10 10 0.00034 0.41 11.2 1.7 2 23 425 446 424 446 0.97 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZNF556-202 - 455 1.9e-29 99.8 80.4 1 10 2.8 3.4e+03 -0.6 0.2 7 22 122 137 122 137 0.78 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF556-202 - 455 1.9e-29 99.8 80.4 2 10 7.3e-06 0.0087 16.8 2.2 1 23 146 168 146 169 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF556-202 - 455 1.9e-29 99.8 80.4 3 10 2.7e-07 0.00033 21.3 1.2 1 23 174 196 174 197 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF556-202 - 455 1.9e-29 99.8 80.4 4 10 6.3e-06 0.0075 17.0 1.9 1 23 202 224 202 225 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF556-202 - 455 1.9e-29 99.8 80.4 5 10 4.4e-07 0.00053 20.6 0.9 1 23 230 252 230 253 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF556-202 - 455 1.9e-29 99.8 80.4 6 10 4.3e-07 0.00051 20.7 4.0 1 23 258 280 258 281 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF556-202 - 455 1.9e-29 99.8 80.4 7 10 0.0002 0.24 12.3 1.8 1 23 286 308 286 309 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF556-202 - 455 1.9e-29 99.8 80.4 8 10 0.00052 0.62 11.1 0.7 1 23 314 336 314 337 0.87 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF556-202 - 455 1.9e-29 99.8 80.4 9 10 0.00079 0.95 10.5 2.2 1 23 369 391 369 392 0.91 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF556-202 - 455 1.9e-29 99.8 80.4 10 10 1.8e-06 0.0022 18.7 2.0 2 23 425 446 424 447 0.96 C2H2-type zinc finger KRAB PF01352.27 42 ZNF556-202 - 455 6.9e-23 80.0 0.3 1 1 9.2e-26 1.1e-22 79.4 0.3 2 42 4 44 3 44 0.98 KRAB box zf-C2H2_jaz PF12171.8 27 ZNF556-202 - 455 3.2e-07 30.4 50.6 1 8 0.025 29 5.1 0.2 2 22 146 166 145 166 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF556-202 - 455 3.2e-07 30.4 50.6 2 8 6.8e-06 0.0081 16.4 0.9 2 24 174 196 173 197 0.95 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF556-202 - 455 3.2e-07 30.4 50.6 3 8 0.00011 0.13 12.6 0.1 2 24 202 224 201 224 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF556-202 - 455 3.2e-07 30.4 50.6 4 8 0.021 25 5.3 0.0 2 20 230 248 229 249 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF556-202 - 455 3.2e-07 30.4 50.6 5 8 0.0012 1.4 9.3 1.6 2 21 258 277 257 278 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF556-202 - 455 3.2e-07 30.4 50.6 6 8 0.92 1.1e+03 0.1 0.9 2 11 286 295 285 306 0.69 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF556-202 - 455 3.2e-07 30.4 50.6 7 8 0.0047 5.6 7.4 0.8 2 22 369 389 368 391 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF556-202 - 455 3.2e-07 30.4 50.6 8 8 0.0073 8.7 6.8 0.9 3 24 425 446 423 450 0.91 Zinc-finger double-stranded RNA-binding Zn-ribbon_8 PF09723.10 40 ZNF556-202 - 455 5e-07 29.7 48.8 1 9 7e-05 0.083 13.0 3.6 6 38 146 185 145 185 0.72 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF556-202 - 455 5e-07 29.7 48.8 2 9 0.00014 0.16 12.1 4.4 6 35 174 210 172 213 0.78 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF556-202 - 455 5e-07 29.7 48.8 3 9 0.0025 3 8.0 0.2 6 21 202 217 200 224 0.81 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF556-202 - 455 5e-07 29.7 48.8 4 9 0.0012 1.4 9.1 7.2 6 36 230 267 229 273 0.83 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF556-202 - 455 5e-07 29.7 48.8 5 9 0.0027 3.3 7.9 7.0 6 34 258 293 257 296 0.81 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF556-202 - 455 5e-07 29.7 48.8 6 9 0.016 19 5.5 6.0 6 34 286 321 285 324 0.83 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF556-202 - 455 5e-07 29.7 48.8 7 9 0.019 22 5.3 0.3 6 15 314 323 312 336 0.88 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF556-202 - 455 5e-07 29.7 48.8 8 9 0.014 17 5.6 0.2 6 15 369 378 368 390 0.86 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF556-202 - 455 5e-07 29.7 48.8 9 9 0.044 53 4.0 0.8 7 16 425 434 415 453 0.80 Zinc ribbon domain # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF556-202.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF556-202.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF556-202.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF556-202.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF556-202.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:08:53 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- KRAB PF01352.27 42 ZNF556-203 - 69 3.3e-23 81.1 0.8 1 1 2.4e-27 4.3e-23 80.7 0.8 2 41 4 43 3 43 0.97 KRAB box # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF556-203.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF556-203.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF556-203.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF556-203.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF556-203.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:08:53 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZNF557-201 - 430 1.2e-70 231.0 70.9 1 11 0.18 1.1e+02 3.5 0.1 7 26 144 163 138 163 0.83 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF557-201 - 430 1.2e-70 231.0 70.9 2 11 8.8e-10 5.2e-07 29.8 0.4 1 25 166 190 166 191 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF557-201 - 430 1.2e-70 231.0 70.9 3 11 5.1e-10 3.1e-07 30.5 0.4 2 26 195 219 194 219 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF557-201 - 430 1.2e-70 231.0 70.9 4 11 5e-11 3e-08 33.7 0.6 2 26 223 247 222 247 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF557-201 - 430 1.2e-70 231.0 70.9 5 11 5.8e-08 3.5e-05 24.0 1.7 2 24 251 273 250 275 0.86 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF557-201 - 430 1.2e-70 231.0 70.9 6 11 8.7e-09 5.2e-06 26.6 1.3 3 26 280 303 279 303 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF557-201 - 430 1.2e-70 231.0 70.9 7 11 7.3e-08 4.4e-05 23.7 1.2 1 25 306 330 306 331 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF557-201 - 430 1.2e-70 231.0 70.9 8 11 4.2e-13 2.5e-10 40.3 0.7 1 26 334 359 334 359 0.97 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF557-201 - 430 1.2e-70 231.0 70.9 9 11 5.6e-09 3.3e-06 27.3 0.2 2 25 363 386 362 386 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF557-201 - 430 1.2e-70 231.0 70.9 10 11 4.7e-12 2.8e-09 37.0 3.2 3 26 392 415 390 415 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF557-201 - 430 1.2e-70 231.0 70.9 11 11 3.9 2.3e+03 -0.7 0.4 2 10 419 427 418 429 0.84 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZNF557-201 - 430 9.3e-61 199.1 80.2 1 10 4.3e-07 0.00026 21.3 2.4 2 23 153 174 153 174 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF557-201 - 430 9.3e-61 199.1 80.2 2 10 4.7e-07 0.00028 21.2 0.4 3 23 182 202 180 202 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF557-201 - 430 9.3e-61 199.1 80.2 3 10 2.1e-09 1.3e-06 28.5 1.3 1 23 208 230 208 230 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF557-201 - 430 9.3e-61 199.1 80.2 4 10 4.3e-08 2.6e-05 24.4 0.8 1 23 236 258 236 258 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF557-201 - 430 9.3e-61 199.1 80.2 5 10 8.3e-05 0.049 14.1 3.8 1 23 264 286 264 286 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF557-201 - 430 9.3e-61 199.1 80.2 6 10 1.7e-07 0.0001 22.6 0.5 1 23 292 314 292 314 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF557-201 - 430 9.3e-61 199.1 80.2 7 10 5.8e-11 3.5e-08 33.5 3.6 1 23 320 342 320 342 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF557-201 - 430 9.3e-61 199.1 80.2 8 10 6e-09 3.6e-06 27.1 1.3 1 23 348 370 348 370 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF557-201 - 430 9.3e-61 199.1 80.2 9 10 3.8e-09 2.3e-06 27.7 1.0 1 23 376 398 376 398 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF557-201 - 430 9.3e-61 199.1 80.2 10 10 2.7e-09 1.6e-06 28.2 1.9 1 23 404 426 404 426 0.99 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZNF557-201 - 430 1.1e-38 128.6 70.3 1 10 2.7e-06 0.0016 19.1 1.5 2 23 153 174 152 175 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF557-201 - 430 1.1e-38 128.6 70.3 2 10 6.2e-05 0.037 14.9 0.4 2 23 181 202 180 203 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF557-201 - 430 1.1e-38 128.6 70.3 3 10 6.8e-06 0.004 17.9 0.7 1 23 208 230 208 231 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF557-201 - 430 1.1e-38 128.6 70.3 4 10 3.1e-06 0.0019 18.9 0.5 1 23 236 258 236 259 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF557-201 - 430 1.1e-38 128.6 70.3 5 10 0.00022 0.13 13.1 2.6 1 23 264 286 264 287 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF557-201 - 430 1.1e-38 128.6 70.3 6 10 3e-05 0.018 15.9 0.5 1 23 292 314 292 315 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF557-201 - 430 1.1e-38 128.6 70.3 7 10 1.8e-06 0.0011 19.6 1.7 1 23 320 342 320 343 0.97 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF557-201 - 430 1.1e-38 128.6 70.3 8 10 3.3e-05 0.019 15.7 0.6 1 23 348 370 348 371 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF557-201 - 430 1.1e-38 128.6 70.3 9 10 1.4e-06 0.00086 19.9 0.9 1 23 376 398 376 399 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF557-201 - 430 1.1e-38 128.6 70.3 10 10 1.6e-06 0.00097 19.8 1.0 1 23 404 426 404 427 0.94 C2H2-type zinc finger KRAB PF01352.27 42 ZNF557-201 - 430 7.9e-28 95.8 0.2 1 1 2.1e-30 1.3e-27 95.2 0.2 1 42 42 83 42 83 0.99 KRAB box zf-C2H2_6 PF13912.6 27 ZNF557-201 - 430 1.2e-18 66.6 68.0 1 10 0.00033 0.19 11.7 1.2 3 24 153 174 153 177 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF557-201 - 430 1.2e-18 66.6 68.0 2 10 0.00061 0.36 10.9 0.6 2 13 180 191 180 204 0.81 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF557-201 - 430 1.2e-18 66.6 68.0 3 10 0.00037 0.22 11.6 0.6 2 24 208 230 208 233 0.87 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF557-201 - 430 1.2e-18 66.6 68.0 4 10 0.0037 2.2 8.4 0.3 2 12 236 246 236 258 0.89 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF557-201 - 430 1.2e-18 66.6 68.0 5 10 0.02 12 6.0 1.2 2 15 264 277 264 288 0.81 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF557-201 - 430 1.2e-18 66.6 68.0 6 10 0.00059 0.35 10.9 1.8 1 20 291 310 291 314 0.86 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF557-201 - 430 1.2e-18 66.6 68.0 7 10 0.00058 0.35 10.9 0.9 2 24 320 342 320 345 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF557-201 - 430 1.2e-18 66.6 68.0 8 10 0.00054 0.32 11.0 0.4 2 22 348 368 348 373 0.78 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF557-201 - 430 1.2e-18 66.6 68.0 9 10 2.9e-05 0.017 15.1 1.4 2 24 376 398 375 401 0.95 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF557-201 - 430 1.2e-18 66.6 68.0 10 10 6.2e-05 0.037 14.0 0.8 2 13 404 415 404 429 0.87 C2H2-type zinc finger Zn-ribbon_8 PF09723.10 40 ZNF557-201 - 430 7.2e-12 45.2 46.1 1 9 0.0068 4 7.6 1.2 7 34 153 187 153 193 0.87 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF557-201 - 430 7.2e-12 45.2 46.1 2 9 5.3e-05 0.032 14.4 4.3 6 35 208 244 207 248 0.89 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF557-201 - 430 7.2e-12 45.2 46.1 3 9 0.0043 2.6 8.3 5.2 6 32 236 269 235 276 0.84 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF557-201 - 430 7.2e-12 45.2 46.1 4 9 0.14 86 3.4 0.9 6 16 264 274 262 285 0.81 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF557-201 - 430 7.2e-12 45.2 46.1 5 9 0.013 7.7 6.7 0.2 6 19 292 305 291 311 0.80 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF557-201 - 430 7.2e-12 45.2 46.1 6 9 5.4e-05 0.032 14.3 4.9 4 34 318 355 318 359 0.76 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF557-201 - 430 7.2e-12 45.2 46.1 7 9 0.012 7.2 6.8 0.4 6 16 348 358 347 369 0.84 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF557-201 - 430 7.2e-12 45.2 46.1 8 9 0.0001 0.061 13.5 0.1 6 22 376 392 375 399 0.87 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF557-201 - 430 7.2e-12 45.2 46.1 9 9 0.034 20 5.4 0.1 6 16 404 414 403 427 0.86 Zinc ribbon domain zf-C2H2_jaz PF12171.8 27 ZNF557-201 - 430 1.1e-11 44.7 39.2 1 10 0.17 1e+02 3.3 0.9 3 22 153 172 152 172 0.90 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF557-201 - 430 1.1e-11 44.7 39.2 2 10 0.093 55 4.2 0.0 4 21 182 199 180 200 0.91 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF557-201 - 430 1.1e-11 44.7 39.2 3 10 0.0029 1.7 9.0 0.1 2 22 208 228 207 228 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF557-201 - 430 1.1e-11 44.7 39.2 4 10 0.0026 1.6 9.1 0.0 2 21 236 255 235 256 0.88 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF557-201 - 430 1.1e-11 44.7 39.2 5 10 0.21 1.3e+02 3.1 0.7 2 22 264 284 263 284 0.91 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF557-201 - 430 1.1e-11 44.7 39.2 6 10 0.045 27 5.2 0.1 2 22 292 312 291 312 0.91 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF557-201 - 430 1.1e-11 44.7 39.2 7 10 0.00016 0.093 13.1 0.1 2 24 320 342 319 342 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF557-201 - 430 1.1e-11 44.7 39.2 8 10 0.025 15 6.0 0.1 2 21 348 367 347 368 0.87 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF557-201 - 430 1.1e-11 44.7 39.2 9 10 0.029 18 5.8 0.8 2 24 376 398 375 402 0.91 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF557-201 - 430 1.1e-11 44.7 39.2 10 10 0.0062 3.7 7.9 0.2 2 21 404 423 403 424 0.89 Zinc-finger double-stranded RNA-binding zf-C2H2_11 PF16622.5 29 ZNF557-201 - 430 1e-10 41.2 56.1 1 10 0.0014 0.82 9.5 0.8 7 26 154 173 152 174 0.93 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF557-201 - 430 1e-10 41.2 56.1 2 10 0.0064 3.8 7.3 1.1 7 26 182 201 180 202 0.90 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF557-201 - 430 1e-10 41.2 56.1 3 10 0.004 2.4 8.0 0.1 6 26 209 229 206 230 0.89 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF557-201 - 430 1e-10 41.2 56.1 4 10 0.0017 1 9.2 0.1 6 26 237 257 234 258 0.94 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF557-201 - 430 1e-10 41.2 56.1 5 10 0.38 2.3e+02 1.7 0.4 5 25 264 284 261 286 0.85 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF557-201 - 430 1e-10 41.2 56.1 6 10 0.02 12 5.8 2.0 7 26 294 313 291 314 0.92 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF557-201 - 430 1e-10 41.2 56.1 7 10 0.13 80 3.1 0.3 6 23 321 338 319 341 0.76 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF557-201 - 430 1e-10 41.2 56.1 8 10 6.6e-05 0.039 13.7 0.3 7 26 350 369 346 370 0.94 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF557-201 - 430 1e-10 41.2 56.1 9 10 0.003 1.8 8.4 0.3 4 25 375 396 373 398 0.92 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF557-201 - 430 1e-10 41.2 56.1 10 10 0.0012 0.69 9.7 0.3 7 26 406 425 403 426 0.92 zinc-finger C2H2-type zinc_ribbon_15 PF17032.5 86 ZNF557-201 - 430 4.1e-08 33.9 34.9 1 5 0.011 6.4 7.6 1.3 37 77 151 191 139 195 0.84 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF557-201 - 430 4.1e-08 33.9 34.9 2 5 0.0021 1.3 9.9 1.3 32 78 202 248 194 251 0.81 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF557-201 - 430 4.1e-08 33.9 34.9 3 5 0.0039 2.3 9.0 0.9 28 74 254 300 250 307 0.81 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF557-201 - 430 4.1e-08 33.9 34.9 4 5 2e-05 0.012 16.3 0.8 31 80 313 362 308 366 0.92 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF557-201 - 430 4.1e-08 33.9 34.9 5 5 0.00041 0.25 12.1 2.4 31 78 369 416 364 419 0.90 zinc-ribbon family zf-LYAR PF08790.11 28 ZNF557-201 - 430 4.3e-08 32.9 47.5 1 10 0.16 94 3.0 0.4 3 18 154 170 153 172 0.77 LYAR-type C2HC zinc finger zf-LYAR PF08790.11 28 ZNF557-201 - 430 4.3e-08 32.9 47.5 2 10 0.35 2.1e+02 1.9 0.1 2 15 181 194 180 198 0.87 LYAR-type C2HC zinc finger zf-LYAR PF08790.11 28 ZNF557-201 - 430 4.3e-08 32.9 47.5 3 10 0.00074 0.44 10.5 0.3 1 15 208 222 208 226 0.89 LYAR-type C2HC zinc finger zf-LYAR PF08790.11 28 ZNF557-201 - 430 4.3e-08 32.9 47.5 4 10 0.00022 0.13 12.1 0.2 1 15 236 250 236 254 0.89 LYAR-type C2HC zinc finger zf-LYAR PF08790.11 28 ZNF557-201 - 430 4.3e-08 32.9 47.5 5 10 0.58 3.5e+02 1.2 0.6 1 14 264 277 264 283 0.82 LYAR-type C2HC zinc finger zf-LYAR PF08790.11 28 ZNF557-201 - 430 4.3e-08 32.9 47.5 6 10 0.051 30 4.6 0.2 1 19 292 311 292 312 0.83 LYAR-type C2HC zinc finger zf-LYAR PF08790.11 28 ZNF557-201 - 430 4.3e-08 32.9 47.5 7 10 0.004 2.4 8.1 0.2 1 18 320 338 320 340 0.83 LYAR-type C2HC zinc finger zf-LYAR PF08790.11 28 ZNF557-201 - 430 4.3e-08 32.9 47.5 8 10 0.014 8.4 6.4 0.4 1 12 348 359 348 367 0.84 LYAR-type C2HC zinc finger zf-LYAR PF08790.11 28 ZNF557-201 - 430 4.3e-08 32.9 47.5 9 10 0.00067 0.4 10.6 0.2 1 18 376 394 376 396 0.91 LYAR-type C2HC zinc finger zf-LYAR PF08790.11 28 ZNF557-201 - 430 4.3e-08 32.9 47.5 10 10 0.079 47 4.0 0.4 3 15 406 418 404 424 0.79 LYAR-type C2HC zinc finger C1_1 PF00130.22 53 ZNF557-201 - 430 1.4e-07 31.3 22.5 1 8 0.073 44 4.1 0.5 13 38 153 189 144 200 0.77 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF557-201 - 430 1.4e-07 31.3 22.5 2 8 0.087 52 3.8 0.2 9 35 177 214 169 216 0.69 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF557-201 - 430 1.4e-07 31.3 22.5 3 8 0.0025 1.5 8.8 0.2 7 38 203 245 197 248 0.81 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF557-201 - 430 1.4e-07 31.3 22.5 4 8 0.0092 5.5 7.0 0.8 7 35 231 270 225 283 0.83 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF557-201 - 430 1.4e-07 31.3 22.5 5 8 0.003 1.8 8.5 0.1 10 38 290 329 282 332 0.81 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF557-201 - 430 1.4e-07 31.3 22.5 6 8 0.00022 0.13 12.2 0.2 3 37 339 384 338 387 0.85 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF557-201 - 430 1.4e-07 31.3 22.5 7 8 0.0085 5.1 7.1 0.9 9 35 373 410 365 412 0.81 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF557-201 - 430 1.4e-07 31.3 22.5 8 8 0.015 9.3 6.2 0.2 6 21 398 413 393 426 0.76 Phorbol esters/diacylglycerol binding domain (C1 domain) zf-met PF12874.7 25 ZNF557-201 - 430 2.5e-07 30.9 51.4 1 8 0.013 7.7 7.1 0.4 3 21 182 200 180 202 0.89 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF557-201 - 430 2.5e-07 30.9 51.4 2 8 0.00098 0.58 10.6 0.5 1 21 208 228 208 230 0.89 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF557-201 - 430 2.5e-07 30.9 51.4 3 8 0.00029 0.18 12.3 0.2 1 22 236 257 236 259 0.92 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF557-201 - 430 2.5e-07 30.9 51.4 4 8 0.071 42 4.7 0.8 1 21 292 312 292 315 0.87 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF557-201 - 430 2.5e-07 30.9 51.4 5 8 0.0036 2.1 8.8 0.3 1 22 320 341 320 343 0.91 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF557-201 - 430 2.5e-07 30.9 51.4 6 8 0.012 7.4 7.1 0.6 1 19 348 366 348 370 0.90 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF557-201 - 430 2.5e-07 30.9 51.4 7 8 0.025 15 6.2 0.9 1 22 376 397 376 399 0.90 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF557-201 - 430 2.5e-07 30.9 51.4 8 8 0.0045 2.7 8.5 1.0 1 20 404 423 404 424 0.91 Zinc-finger of C2H2 type # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF557-201.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF557-201.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF557-201.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF557-201.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF557-201.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:08:54 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZNF557-202 - 423 9.3e-71 231.3 70.9 1 11 0.19 1.1e+02 3.5 0.1 7 26 137 156 131 156 0.83 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF557-202 - 423 9.3e-71 231.3 70.9 2 11 9.2e-10 5.1e-07 29.8 0.4 1 25 159 183 159 184 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF557-202 - 423 9.3e-71 231.3 70.9 3 11 5.4e-10 3e-07 30.6 0.4 2 26 188 212 187 212 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF557-202 - 423 9.3e-71 231.3 70.9 4 11 5.2e-11 2.9e-08 33.8 0.6 2 26 216 240 215 240 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF557-202 - 423 9.3e-71 231.3 70.9 5 11 6.1e-08 3.4e-05 24.1 1.7 2 24 244 266 243 268 0.86 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF557-202 - 423 9.3e-71 231.3 70.9 6 11 9.1e-09 5.1e-06 26.7 1.3 3 26 273 296 272 296 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF557-202 - 423 9.3e-71 231.3 70.9 7 11 7.6e-08 4.3e-05 23.8 1.2 1 25 299 323 299 324 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF557-202 - 423 9.3e-71 231.3 70.9 8 11 4.3e-13 2.4e-10 40.3 0.7 1 26 327 352 327 352 0.97 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF557-202 - 423 9.3e-71 231.3 70.9 9 11 5.8e-09 3.3e-06 27.3 0.2 2 25 356 379 355 379 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF557-202 - 423 9.3e-71 231.3 70.9 10 11 4.9e-12 2.7e-09 37.0 3.2 3 26 385 408 383 408 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF557-202 - 423 9.3e-71 231.3 70.9 11 11 4.1 2.3e+03 -0.7 0.4 2 10 412 420 411 422 0.84 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZNF557-202 - 423 7.7e-61 199.3 80.2 1 10 4.5e-07 0.00025 21.3 2.4 2 23 146 167 146 167 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF557-202 - 423 7.7e-61 199.3 80.2 2 10 5e-07 0.00028 21.2 0.4 3 23 175 195 173 195 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF557-202 - 423 7.7e-61 199.3 80.2 3 10 2.2e-09 1.2e-06 28.6 1.3 1 23 201 223 201 223 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF557-202 - 423 7.7e-61 199.3 80.2 4 10 4.5e-08 2.5e-05 24.5 0.8 1 23 229 251 229 251 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF557-202 - 423 7.7e-61 199.3 80.2 5 10 8.6e-05 0.048 14.1 3.8 1 23 257 279 257 279 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF557-202 - 423 7.7e-61 199.3 80.2 6 10 1.8e-07 9.9e-05 22.6 0.5 1 23 285 307 285 307 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF557-202 - 423 7.7e-61 199.3 80.2 7 10 6.1e-11 3.4e-08 33.5 3.6 1 23 313 335 313 335 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF557-202 - 423 7.7e-61 199.3 80.2 8 10 6.3e-09 3.5e-06 27.2 1.3 1 23 341 363 341 363 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF557-202 - 423 7.7e-61 199.3 80.2 9 10 4e-09 2.3e-06 27.8 1.0 1 23 369 391 369 391 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF557-202 - 423 7.7e-61 199.3 80.2 10 10 2.8e-09 1.6e-06 28.3 1.9 1 23 397 419 397 419 0.99 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZNF557-202 - 423 8.6e-39 128.8 70.3 1 10 2.8e-06 0.0016 19.1 1.5 2 23 146 167 145 168 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF557-202 - 423 8.6e-39 128.8 70.3 2 10 6.4e-05 0.036 14.9 0.4 2 23 174 195 173 196 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF557-202 - 423 8.6e-39 128.8 70.3 3 10 7.1e-06 0.004 17.9 0.7 1 23 201 223 201 224 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF557-202 - 423 8.6e-39 128.8 70.3 4 10 3.3e-06 0.0018 18.9 0.5 1 23 229 251 229 252 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF557-202 - 423 8.6e-39 128.8 70.3 5 10 0.00023 0.13 13.2 2.6 1 23 257 279 257 280 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF557-202 - 423 8.6e-39 128.8 70.3 6 10 3.1e-05 0.017 15.9 0.5 1 23 285 307 285 308 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF557-202 - 423 8.6e-39 128.8 70.3 7 10 1.9e-06 0.0011 19.7 1.7 1 23 313 335 313 336 0.97 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF557-202 - 423 8.6e-39 128.8 70.3 8 10 3.4e-05 0.019 15.8 0.6 1 23 341 363 341 364 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF557-202 - 423 8.6e-39 128.8 70.3 9 10 1.5e-06 0.00084 20.0 0.9 1 23 369 391 369 392 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF557-202 - 423 8.6e-39 128.8 70.3 10 10 1.7e-06 0.00095 19.8 1.0 1 23 397 419 397 420 0.94 C2H2-type zinc finger KRAB PF01352.27 42 ZNF557-202 - 423 7.8e-28 95.9 0.2 1 1 2.2e-30 1.2e-27 95.2 0.2 1 42 35 76 35 76 0.99 KRAB box zf-C2H2_6 PF13912.6 27 ZNF557-202 - 423 1e-18 66.8 68.0 1 10 0.00034 0.19 11.8 1.2 3 24 146 167 146 170 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF557-202 - 423 1e-18 66.8 68.0 2 10 0.00064 0.36 10.9 0.6 2 13 173 184 173 197 0.81 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF557-202 - 423 1e-18 66.8 68.0 3 10 0.00039 0.22 11.6 0.6 2 24 201 223 201 226 0.87 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF557-202 - 423 1e-18 66.8 68.0 4 10 0.0038 2.2 8.4 0.3 2 12 229 239 229 251 0.89 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF557-202 - 423 1e-18 66.8 68.0 5 10 0.021 12 6.1 1.2 2 15 257 270 257 281 0.81 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF557-202 - 423 1e-18 66.8 68.0 6 10 0.00061 0.34 10.9 1.8 1 20 284 303 284 307 0.86 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF557-202 - 423 1e-18 66.8 68.0 7 10 0.00061 0.34 11.0 0.9 2 24 313 335 313 338 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF557-202 - 423 1e-18 66.8 68.0 8 10 0.00056 0.32 11.1 0.4 2 22 341 361 341 366 0.78 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF557-202 - 423 1e-18 66.8 68.0 9 10 3e-05 0.017 15.1 1.4 2 24 369 391 368 394 0.95 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF557-202 - 423 1e-18 66.8 68.0 10 10 6.5e-05 0.036 14.1 0.8 2 13 397 408 397 422 0.87 C2H2-type zinc finger Zn-ribbon_8 PF09723.10 40 ZNF557-202 - 423 6.2e-12 45.4 46.1 1 9 0.0071 4 7.6 1.2 7 34 146 180 146 186 0.87 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF557-202 - 423 6.2e-12 45.4 46.1 2 9 6.1e-05 0.034 14.3 4.3 6 35 201 237 200 240 0.89 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF557-202 - 423 6.2e-12 45.4 46.1 3 9 0.0045 2.5 8.3 5.3 6 32 229 262 228 269 0.84 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF557-202 - 423 6.2e-12 45.4 46.1 4 9 0.15 85 3.4 0.9 6 16 257 267 255 278 0.81 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF557-202 - 423 6.2e-12 45.4 46.1 5 9 0.013 7.5 6.8 0.2 6 19 285 298 284 304 0.80 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF557-202 - 423 6.2e-12 45.4 46.1 6 9 5.6e-05 0.032 14.4 4.9 4 34 311 348 311 352 0.76 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF557-202 - 423 6.2e-12 45.4 46.1 7 9 0.013 7 6.9 0.4 6 16 341 351 340 362 0.84 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF557-202 - 423 6.2e-12 45.4 46.1 8 9 0.00011 0.06 13.5 0.1 6 22 369 385 368 392 0.87 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF557-202 - 423 6.2e-12 45.4 46.1 9 9 0.035 20 5.4 0.1 6 16 397 407 396 420 0.86 Zinc ribbon domain zf-C2H2_jaz PF12171.8 27 ZNF557-202 - 423 9.1e-12 44.9 39.2 1 10 0.18 1e+02 3.4 0.9 3 22 146 165 145 165 0.90 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF557-202 - 423 9.1e-12 44.9 39.2 2 10 0.097 54 4.2 0.0 4 21 175 192 173 193 0.91 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF557-202 - 423 9.1e-12 44.9 39.2 3 10 0.003 1.7 9.0 0.1 2 22 201 221 200 221 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF557-202 - 423 9.1e-12 44.9 39.2 4 10 0.0027 1.5 9.2 0.0 2 21 229 248 228 249 0.88 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF557-202 - 423 9.1e-12 44.9 39.2 5 10 0.22 1.2e+02 3.1 0.7 2 22 257 277 256 277 0.91 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF557-202 - 423 9.1e-12 44.9 39.2 6 10 0.047 26 5.2 0.1 2 22 285 305 284 305 0.91 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF557-202 - 423 9.1e-12 44.9 39.2 7 10 0.00016 0.091 13.1 0.1 2 24 313 335 312 335 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF557-202 - 423 9.1e-12 44.9 39.2 8 10 0.026 15 6.0 0.1 2 21 341 360 340 361 0.87 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF557-202 - 423 9.1e-12 44.9 39.2 9 10 0.031 17 5.8 0.8 2 24 369 391 368 395 0.91 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF557-202 - 423 9.1e-12 44.9 39.2 10 10 0.0065 3.6 8.0 0.2 2 21 397 416 396 417 0.89 Zinc-finger double-stranded RNA-binding zf-C2H2_11 PF16622.5 29 ZNF557-202 - 423 8.6e-11 41.4 56.1 1 10 0.0014 0.8 9.5 0.8 7 26 147 166 145 167 0.93 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF557-202 - 423 8.6e-11 41.4 56.1 2 10 0.0067 3.8 7.4 1.1 7 26 175 194 173 195 0.90 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF557-202 - 423 8.6e-11 41.4 56.1 3 10 0.0042 2.3 8.0 0.1 6 26 202 222 199 223 0.89 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF557-202 - 423 8.6e-11 41.4 56.1 4 10 0.0018 0.98 9.2 0.1 6 26 230 250 227 251 0.94 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF557-202 - 423 8.6e-11 41.4 56.1 5 10 0.4 2.2e+02 1.7 0.4 5 25 257 277 254 279 0.85 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF557-202 - 423 8.6e-11 41.4 56.1 6 10 0.021 12 5.8 2.0 7 26 287 306 284 307 0.92 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF557-202 - 423 8.6e-11 41.4 56.1 7 10 0.14 79 3.1 0.3 6 23 314 331 312 334 0.76 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF557-202 - 423 8.6e-11 41.4 56.1 8 10 6.9e-05 0.039 13.7 0.3 7 26 343 362 339 363 0.94 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF557-202 - 423 8.6e-11 41.4 56.1 9 10 0.0032 1.8 8.4 0.3 4 25 368 389 366 391 0.92 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF557-202 - 423 8.6e-11 41.4 56.1 10 10 0.0012 0.68 9.7 0.3 7 26 399 418 396 419 0.92 zinc-finger C2H2-type zinc_ribbon_15 PF17032.5 86 ZNF557-202 - 423 3.6e-08 34.0 34.8 1 5 0.011 6.3 7.6 1.3 37 77 144 184 132 188 0.84 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF557-202 - 423 3.6e-08 34.0 34.8 2 5 0.0022 1.2 9.9 1.3 32 78 195 241 187 244 0.81 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF557-202 - 423 3.6e-08 34.0 34.8 3 5 0.0041 2.3 9.0 0.9 28 74 247 293 243 300 0.81 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF557-202 - 423 3.6e-08 34.0 34.8 4 5 2.1e-05 0.012 16.4 0.8 31 80 306 355 301 359 0.92 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF557-202 - 423 3.6e-08 34.0 34.8 5 5 0.00043 0.24 12.2 2.4 31 78 362 409 357 412 0.90 zinc-ribbon family zf-LYAR PF08790.11 28 ZNF557-202 - 423 3.6e-08 33.1 47.5 1 10 0.16 92 3.1 0.4 3 18 147 163 146 165 0.77 LYAR-type C2HC zinc finger zf-LYAR PF08790.11 28 ZNF557-202 - 423 3.6e-08 33.1 47.5 2 10 0.37 2.1e+02 1.9 0.1 2 15 174 187 173 191 0.87 LYAR-type C2HC zinc finger zf-LYAR PF08790.11 28 ZNF557-202 - 423 3.6e-08 33.1 47.5 3 10 0.00077 0.43 10.5 0.3 1 15 201 215 201 219 0.89 LYAR-type C2HC zinc finger zf-LYAR PF08790.11 28 ZNF557-202 - 423 3.6e-08 33.1 47.5 4 10 0.00024 0.13 12.2 0.2 1 15 229 243 229 247 0.89 LYAR-type C2HC zinc finger zf-LYAR PF08790.11 28 ZNF557-202 - 423 3.6e-08 33.1 47.5 5 10 0.61 3.4e+02 1.3 0.6 1 14 257 270 257 276 0.82 LYAR-type C2HC zinc finger zf-LYAR PF08790.11 28 ZNF557-202 - 423 3.6e-08 33.1 47.5 6 10 0.053 30 4.6 0.2 1 19 285 304 285 305 0.83 LYAR-type C2HC zinc finger zf-LYAR PF08790.11 28 ZNF557-202 - 423 3.6e-08 33.1 47.5 7 10 0.0042 2.4 8.2 0.2 1 18 313 331 313 333 0.83 LYAR-type C2HC zinc finger zf-LYAR PF08790.11 28 ZNF557-202 - 423 3.6e-08 33.1 47.5 8 10 0.015 8.3 6.4 0.4 1 12 341 352 341 360 0.84 LYAR-type C2HC zinc finger zf-LYAR PF08790.11 28 ZNF557-202 - 423 3.6e-08 33.1 47.5 9 10 0.0007 0.39 10.6 0.2 1 18 369 387 369 389 0.91 LYAR-type C2HC zinc finger zf-LYAR PF08790.11 28 ZNF557-202 - 423 3.6e-08 33.1 47.5 10 10 0.082 46 4.0 0.4 3 15 399 411 397 417 0.79 LYAR-type C2HC zinc finger C1_1 PF00130.22 53 ZNF557-202 - 423 1.7e-07 31.0 23.0 1 8 0.08 45 4.0 0.5 13 38 146 182 138 193 0.76 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF557-202 - 423 1.7e-07 31.0 23.0 2 8 0.06 34 4.4 0.3 9 36 170 208 162 210 0.68 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF557-202 - 423 1.7e-07 31.0 23.0 3 8 0.0027 1.5 8.8 0.3 7 38 196 238 190 241 0.81 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF557-202 - 423 1.7e-07 31.0 23.0 4 8 0.0094 5.3 7.0 0.8 7 35 224 263 218 274 0.82 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF557-202 - 423 1.7e-07 31.0 23.0 5 8 0.0032 1.8 8.5 0.1 10 38 283 322 275 325 0.81 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF557-202 - 423 1.7e-07 31.0 23.0 6 8 0.00022 0.13 12.2 0.2 3 37 332 377 331 380 0.85 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF557-202 - 423 1.7e-07 31.0 23.0 7 8 0.0072 4 7.4 1.2 9 36 366 404 358 406 0.78 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF557-202 - 423 1.7e-07 31.0 23.0 8 8 0.016 9.2 6.2 0.2 6 21 391 406 386 419 0.76 Phorbol esters/diacylglycerol binding domain (C1 domain) zf-met PF12874.7 25 ZNF557-202 - 423 2.1e-07 31.1 51.4 1 8 0.013 7.5 7.1 0.4 3 21 175 193 173 195 0.89 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF557-202 - 423 2.1e-07 31.1 51.4 2 8 0.001 0.57 10.6 0.5 1 21 201 221 201 223 0.89 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF557-202 - 423 2.1e-07 31.1 51.4 3 8 0.00031 0.17 12.3 0.2 1 22 229 250 229 252 0.92 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF557-202 - 423 2.1e-07 31.1 51.4 4 8 0.074 42 4.7 0.8 1 21 285 305 285 308 0.87 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF557-202 - 423 2.1e-07 31.1 51.4 5 8 0.0037 2.1 8.9 0.3 1 22 313 334 313 336 0.91 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF557-202 - 423 2.1e-07 31.1 51.4 6 8 0.013 7.2 7.1 0.6 1 19 341 359 341 363 0.90 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF557-202 - 423 2.1e-07 31.1 51.4 7 8 0.026 15 6.2 0.9 1 22 369 390 369 392 0.90 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF557-202 - 423 2.1e-07 31.1 51.4 8 8 0.0047 2.6 8.5 1.0 1 20 397 416 397 417 0.91 Zinc-finger of C2H2 type # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF557-202.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF557-202.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF557-202.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF557-202.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF557-202.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:08:54 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZNF558-201 - 402 1.8e-67 220.9 70.0 1 10 0.016 10 6.7 0.2 7 26 144 163 143 163 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF558-201 - 402 1.8e-67 220.9 70.0 2 10 1.2e-11 7.8e-09 35.6 0.4 1 26 166 191 166 191 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF558-201 - 402 1.8e-67 220.9 70.0 3 10 9.4e-10 6e-07 29.6 1.1 2 25 195 218 194 219 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF558-201 - 402 1.8e-67 220.9 70.0 4 10 4e-09 2.6e-06 27.6 1.4 1 24 222 245 222 247 0.89 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF558-201 - 402 1.8e-67 220.9 70.0 5 10 6.8e-10 4.4e-07 30.0 2.6 1 26 250 275 250 275 0.97 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF558-201 - 402 1.8e-67 220.9 70.0 6 10 3.7e-09 2.4e-06 27.7 1.4 2 25 279 302 278 303 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF558-201 - 402 1.8e-67 220.9 70.0 7 10 4.8e-12 3.1e-09 36.9 0.8 2 26 307 331 306 331 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF558-201 - 402 1.8e-67 220.9 70.0 8 10 3.9e-12 2.5e-09 37.1 0.3 2 26 335 359 334 359 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF558-201 - 402 1.8e-67 220.9 70.0 9 10 1.8e-11 1.2e-08 35.0 2.9 2 26 363 387 362 387 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF558-201 - 402 1.8e-67 220.9 70.0 10 10 6.2 4e+03 -1.4 0.4 2 9 391 398 390 399 0.85 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZNF558-201 - 402 8.3e-52 170.9 77.3 1 9 2.2e-07 0.00014 22.1 1.9 2 23 153 174 153 174 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF558-201 - 402 8.3e-52 170.9 77.3 2 9 5.3e-08 3.4e-05 24.1 1.5 1 23 180 202 180 202 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF558-201 - 402 8.3e-52 170.9 77.3 3 9 1.5e-09 9.4e-07 29.0 0.8 1 23 208 230 208 230 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF558-201 - 402 8.3e-52 170.9 77.3 4 9 6.7e-05 0.043 14.3 6.7 1 23 236 258 236 258 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF558-201 - 402 8.3e-52 170.9 77.3 5 9 1.8e-06 0.0011 19.2 1.1 1 23 264 286 264 286 0.94 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF558-201 - 402 8.3e-52 170.9 77.3 6 9 3.2e-09 2e-06 27.9 3.9 1 23 292 314 292 314 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF558-201 - 402 8.3e-52 170.9 77.3 7 9 8.4e-09 5.4e-06 26.6 1.0 1 23 320 342 320 342 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF558-201 - 402 8.3e-52 170.9 77.3 8 9 7.9e-09 5.1e-06 26.7 0.3 1 23 348 370 348 370 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF558-201 - 402 8.3e-52 170.9 77.3 9 9 1.4e-08 8.8e-06 25.9 2.9 1 23 376 398 376 398 0.98 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZNF558-201 - 402 5.6e-33 110.8 70.2 1 9 9.4e-06 0.006 17.3 1.2 2 23 153 174 152 175 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF558-201 - 402 5.6e-33 110.8 70.2 2 9 2e-05 0.013 16.3 0.8 3 23 182 202 180 203 0.91 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF558-201 - 402 5.6e-33 110.8 70.2 3 9 7.1e-07 0.00046 20.8 0.7 1 23 208 230 208 231 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF558-201 - 402 5.6e-33 110.8 70.2 4 9 0.0013 0.82 10.7 5.5 1 23 236 258 236 259 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF558-201 - 402 5.6e-33 110.8 70.2 5 9 0.00024 0.15 13.0 0.8 1 19 264 282 264 286 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF558-201 - 402 5.6e-33 110.8 70.2 6 9 6.5e-06 0.0042 17.8 2.5 1 23 292 314 292 315 0.91 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF558-201 - 402 5.6e-33 110.8 70.2 7 9 3.4e-06 0.0022 18.7 1.0 1 23 320 342 320 343 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF558-201 - 402 5.6e-33 110.8 70.2 8 9 1.6e-06 0.001 19.7 0.3 1 23 348 370 348 371 0.97 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF558-201 - 402 5.6e-33 110.8 70.2 9 9 1.7e-06 0.0011 19.6 1.9 1 23 376 398 376 399 0.94 C2H2-type zinc finger KRAB PF01352.27 42 ZNF558-201 - 402 7.5e-28 95.9 0.2 1 1 1.8e-30 1.2e-27 95.3 0.2 1 42 42 83 42 83 0.99 KRAB box zf-C2H2_6 PF13912.6 27 ZNF558-201 - 402 1.8e-19 69.3 70.6 1 9 0.00013 0.085 12.9 1.1 3 24 153 174 153 177 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF558-201 - 402 1.8e-19 69.3 70.6 2 9 9.1e-05 0.058 13.4 0.8 2 24 180 202 180 205 0.83 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF558-201 - 402 1.8e-19 69.3 70.6 3 9 0.0046 2.9 8.0 0.4 2 24 208 230 208 233 0.83 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF558-201 - 402 1.8e-19 69.3 70.6 4 9 0.02 13 5.9 4.4 2 24 236 258 236 261 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF558-201 - 402 1.8e-19 69.3 70.6 5 9 3.5e-07 0.00022 21.1 2.4 1 24 263 286 263 289 0.92 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF558-201 - 402 1.8e-19 69.3 70.6 6 9 0.0048 3 7.9 2.3 2 24 292 314 292 317 0.84 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF558-201 - 402 1.8e-19 69.3 70.6 7 9 7.6e-07 0.00049 20.0 1.1 2 24 320 342 320 345 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF558-201 - 402 1.8e-19 69.3 70.6 8 9 9.6e-05 0.062 13.3 0.5 2 24 348 370 348 373 0.95 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF558-201 - 402 1.8e-19 69.3 70.6 9 9 0.0015 0.95 9.5 1.8 2 13 376 387 376 400 0.80 C2H2-type zinc finger zf-C2H2_jaz PF12171.8 27 ZNF558-201 - 402 2.1e-15 56.5 34.2 1 8 0.13 85 3.6 1.8 3 22 153 172 152 172 0.90 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF558-201 - 402 2.1e-15 56.5 34.2 2 8 0.017 11 6.5 0.1 2 21 180 199 179 200 0.88 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF558-201 - 402 2.1e-15 56.5 34.2 3 8 0.0001 0.064 13.6 0.0 2 22 208 228 207 228 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF558-201 - 402 2.1e-15 56.5 34.2 4 8 0.013 8.1 6.9 0.3 2 20 264 282 263 284 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF558-201 - 402 2.1e-15 56.5 34.2 5 8 0.00018 0.12 12.7 0.6 2 24 292 314 291 314 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF558-201 - 402 2.1e-15 56.5 34.2 6 8 0.00091 0.58 10.5 0.1 2 22 320 340 319 340 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF558-201 - 402 2.1e-15 56.5 34.2 7 8 0.00019 0.12 12.7 0.2 2 24 348 370 347 370 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF558-201 - 402 2.1e-15 56.5 34.2 8 8 0.002 1.3 9.4 0.4 2 21 376 395 375 396 0.91 Zinc-finger double-stranded RNA-binding zf-C2H2_11 PF16622.5 29 ZNF558-201 - 402 9.3e-07 28.5 51.0 1 8 0.81 5.2e+02 0.5 0.3 7 26 154 173 152 174 0.86 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF558-201 - 402 9.3e-07 28.5 51.0 2 8 0.0046 3 7.7 1.0 7 26 182 201 179 202 0.89 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF558-201 - 402 9.3e-07 28.5 51.0 3 8 5.8e-05 0.037 13.8 0.2 6 26 209 229 206 230 0.94 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF558-201 - 402 9.3e-07 28.5 51.0 4 8 0.0028 1.8 8.4 1.0 5 25 264 284 261 286 0.85 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF558-201 - 402 9.3e-07 28.5 51.0 5 8 0.57 3.6e+02 1.0 0.2 6 23 293 310 291 313 0.75 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF558-201 - 402 9.3e-07 28.5 51.0 6 8 2e-05 0.013 15.3 0.3 6 26 321 341 318 342 0.92 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF558-201 - 402 9.3e-07 28.5 51.0 7 8 0.19 1.2e+02 2.6 0.1 6 25 349 368 346 370 0.86 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF558-201 - 402 9.3e-07 28.5 51.0 8 8 0.00011 0.072 12.9 0.5 6 26 377 397 374 398 0.92 zinc-finger C2H2-type # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF558-201.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF558-201.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF558-201.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF558-201.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF558-201.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:08:54 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF558-202.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF558-202.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF558-202.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF558-202.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF558-202.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:08:55 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF558-203.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF558-203.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF558-203.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF558-203.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF558-203.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:08:55 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF558-204.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF558-204.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF558-204.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF558-204.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF558-204.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:08:55 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZNF558-205 - 331 3e-68 223.4 70.6 1 10 0.014 8.1 7.1 0.2 7 26 73 92 72 92 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF558-205 - 331 3e-68 223.4 70.6 2 10 1e-11 6.1e-09 35.9 0.4 1 26 95 120 95 120 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF558-205 - 331 3e-68 223.4 70.6 3 10 8.2e-10 4.7e-07 29.9 1.1 2 25 124 147 123 148 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF558-205 - 331 3e-68 223.4 70.6 4 10 3.5e-09 2e-06 27.9 1.4 1 24 151 174 151 176 0.89 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF558-205 - 331 3e-68 223.4 70.6 5 10 5.9e-10 3.4e-07 30.4 2.6 1 26 179 204 179 204 0.97 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF558-205 - 331 3e-68 223.4 70.6 6 10 3.2e-09 1.9e-06 28.1 1.4 2 25 208 231 207 232 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF558-205 - 331 3e-68 223.4 70.6 7 10 4.1e-12 2.4e-09 37.2 0.8 2 26 236 260 235 260 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF558-205 - 331 3e-68 223.4 70.6 8 10 3.4e-12 2e-09 37.5 0.3 2 26 264 288 263 288 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF558-205 - 331 3e-68 223.4 70.6 9 10 1.6e-11 9.2e-09 35.3 2.9 2 26 292 316 291 316 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF558-205 - 331 3e-68 223.4 70.6 10 10 5.2 3e+03 -1.0 0.5 2 10 320 328 319 329 0.85 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZNF558-205 - 331 1e-52 173.8 77.3 1 9 1.9e-07 0.00011 22.5 1.9 2 23 82 103 82 103 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF558-205 - 331 1e-52 173.8 77.3 2 9 4.6e-08 2.6e-05 24.4 1.5 1 23 109 131 109 131 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF558-205 - 331 1e-52 173.8 77.3 3 9 1.3e-09 7.3e-07 29.3 0.8 1 23 137 159 137 159 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF558-205 - 331 1e-52 173.8 77.3 4 9 5.8e-05 0.034 14.6 6.7 1 23 165 187 165 187 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF558-205 - 331 1e-52 173.8 77.3 5 9 1.6e-06 0.0009 19.6 1.1 1 23 193 215 193 215 0.94 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF558-205 - 331 1e-52 173.8 77.3 6 9 2.8e-09 1.6e-06 28.2 3.9 1 23 221 243 221 243 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF558-205 - 331 1e-52 173.8 77.3 7 9 7.3e-09 4.2e-06 26.9 1.0 1 23 249 271 249 271 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF558-205 - 331 1e-52 173.8 77.3 8 9 6.9e-09 4e-06 27.0 0.3 1 23 277 299 277 299 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF558-205 - 331 1e-52 173.8 77.3 9 9 1.2e-08 6.9e-06 26.2 2.9 1 23 305 327 305 327 0.98 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZNF558-205 - 331 6.5e-34 113.7 70.2 1 9 8.1e-06 0.0047 17.7 1.2 2 23 82 103 81 104 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF558-205 - 331 6.5e-34 113.7 70.2 2 9 1.7e-05 0.0099 16.6 0.8 3 23 111 131 109 132 0.91 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF558-205 - 331 6.5e-34 113.7 70.2 3 9 6.2e-07 0.00036 21.1 0.7 1 23 137 159 137 160 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF558-205 - 331 6.5e-34 113.7 70.2 4 9 0.0011 0.64 11.0 5.5 1 23 165 187 165 188 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF558-205 - 331 6.5e-34 113.7 70.2 5 9 0.00021 0.12 13.3 0.8 1 19 193 211 193 215 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF558-205 - 331 6.5e-34 113.7 70.2 6 9 5.6e-06 0.0033 18.1 2.5 1 23 221 243 221 244 0.91 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF558-205 - 331 6.5e-34 113.7 70.2 7 9 2.9e-06 0.0017 19.0 1.0 1 23 249 271 249 272 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF558-205 - 331 6.5e-34 113.7 70.2 8 9 1.4e-06 0.0008 20.0 0.3 1 23 277 299 277 300 0.97 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF558-205 - 331 6.5e-34 113.7 70.2 9 9 1.5e-06 0.00086 19.9 1.9 1 23 305 327 305 328 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF558-205 - 331 2.1e-20 72.2 70.7 1 9 0.00012 0.067 13.2 1.1 3 24 82 103 82 106 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF558-205 - 331 2.1e-20 72.2 70.7 2 9 7.9e-05 0.046 13.7 0.8 2 24 109 131 109 134 0.83 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF558-205 - 331 2.1e-20 72.2 70.7 3 9 0.004 2.3 8.3 0.4 2 24 137 159 137 162 0.83 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF558-205 - 331 2.1e-20 72.2 70.7 4 9 0.018 10 6.2 4.4 2 24 165 187 165 190 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF558-205 - 331 2.1e-20 72.2 70.7 5 9 3e-07 0.00017 21.5 2.4 1 24 192 215 192 218 0.92 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF558-205 - 331 2.1e-20 72.2 70.7 6 9 0.0042 2.4 8.3 2.3 2 24 221 243 221 246 0.84 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF558-205 - 331 2.1e-20 72.2 70.7 7 9 6.6e-07 0.00038 20.4 1.1 2 24 249 271 249 274 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF558-205 - 331 2.1e-20 72.2 70.7 8 9 8.4e-05 0.048 13.7 0.5 2 24 277 299 277 302 0.95 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF558-205 - 331 2.1e-20 72.2 70.7 9 9 0.0013 0.76 9.9 1.8 2 13 305 316 305 329 0.80 C2H2-type zinc finger zf-C2H2_jaz PF12171.8 27 ZNF558-205 - 331 3.2e-16 59.2 34.2 1 8 0.12 67 3.9 1.8 3 22 82 101 81 101 0.90 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF558-205 - 331 3.2e-16 59.2 34.2 2 8 0.015 8.5 6.8 0.1 2 21 109 128 108 129 0.88 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF558-205 - 331 3.2e-16 59.2 34.2 3 8 8.7e-05 0.051 13.9 0.0 2 22 137 157 136 157 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF558-205 - 331 3.2e-16 59.2 34.2 4 8 0.011 6.4 7.2 0.3 2 20 193 211 192 213 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF558-205 - 331 3.2e-16 59.2 34.2 5 8 0.00016 0.093 13.0 0.6 2 24 221 243 220 243 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF558-205 - 331 3.2e-16 59.2 34.2 6 8 0.00079 0.46 10.8 0.1 2 22 249 269 248 269 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF558-205 - 331 3.2e-16 59.2 34.2 7 8 0.00017 0.096 13.0 0.2 2 24 277 299 276 299 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF558-205 - 331 3.2e-16 59.2 34.2 8 8 0.0017 1 9.7 0.4 2 22 305 325 304 325 0.91 Zinc-finger double-stranded RNA-binding zf-C2H2_11 PF16622.5 29 ZNF558-205 - 331 1.4e-07 31.2 51.0 1 8 0.71 4.1e+02 0.8 0.3 7 26 83 102 81 103 0.86 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF558-205 - 331 1.4e-07 31.2 51.0 2 8 0.0041 2.3 8.0 1.0 7 26 111 130 108 131 0.90 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF558-205 - 331 1.4e-07 31.2 51.0 3 8 5.1e-05 0.029 14.1 0.2 6 26 138 158 135 159 0.94 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF558-205 - 331 1.4e-07 31.2 51.0 4 8 0.0025 1.4 8.7 1.0 5 25 193 213 190 215 0.85 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF558-205 - 331 1.4e-07 31.2 51.0 5 8 0.48 2.8e+02 1.4 0.2 6 23 222 239 219 242 0.76 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF558-205 - 331 1.4e-07 31.2 51.0 6 8 1.7e-05 0.01 15.6 0.3 6 26 250 270 247 271 0.92 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF558-205 - 331 1.4e-07 31.2 51.0 7 8 0.16 94 2.9 0.1 6 25 278 297 275 299 0.86 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF558-205 - 331 1.4e-07 31.2 51.0 8 8 9.9e-05 0.057 13.2 0.5 6 26 306 326 303 327 0.92 zinc-finger C2H2-type Zn-ribbon_8 PF09723.10 40 ZNF558-205 - 331 3.6e-07 30.2 48.7 1 9 0.027 16 5.8 2.9 7 34 82 116 81 121 0.72 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF558-205 - 331 3.6e-07 30.2 48.7 2 9 8.9e-05 0.051 13.7 2.6 6 34 109 144 108 147 0.85 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF558-205 - 331 3.6e-07 30.2 48.7 3 9 0.014 7.9 6.7 0.4 6 16 137 147 135 157 0.87 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF558-205 - 331 3.6e-07 30.2 48.7 4 9 0.036 21 5.3 7.1 6 35 165 201 164 206 0.78 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF558-205 - 331 3.6e-07 30.2 48.7 5 9 0.038 22 5.3 0.3 7 20 194 207 192 216 0.82 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF558-205 - 331 3.6e-07 30.2 48.7 6 9 0.0012 0.68 10.1 7.2 6 34 221 256 220 258 0.84 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF558-205 - 331 3.6e-07 30.2 48.7 7 9 0.0003 0.17 12.0 4.9 6 34 249 284 248 284 0.89 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF558-205 - 331 3.6e-07 30.2 48.7 8 9 0.00015 0.087 13.0 4.1 6 34 277 312 276 315 0.75 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF558-205 - 331 3.6e-07 30.2 48.7 9 9 0.0098 5.7 7.2 0.7 6 16 305 315 304 325 0.88 Zinc ribbon domain # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF558-205.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF558-205.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF558-205.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF558-205.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF558-205.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:08:56 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF558-206.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF558-206.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF558-206.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF558-206.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF558-206.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:08:56 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZNF558-207 - 402 1.8e-67 220.9 70.0 1 10 0.016 10 6.7 0.2 7 26 144 163 143 163 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF558-207 - 402 1.8e-67 220.9 70.0 2 10 1.2e-11 7.8e-09 35.6 0.4 1 26 166 191 166 191 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF558-207 - 402 1.8e-67 220.9 70.0 3 10 9.4e-10 6e-07 29.6 1.1 2 25 195 218 194 219 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF558-207 - 402 1.8e-67 220.9 70.0 4 10 4e-09 2.6e-06 27.6 1.4 1 24 222 245 222 247 0.89 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF558-207 - 402 1.8e-67 220.9 70.0 5 10 6.8e-10 4.4e-07 30.0 2.6 1 26 250 275 250 275 0.97 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF558-207 - 402 1.8e-67 220.9 70.0 6 10 3.7e-09 2.4e-06 27.7 1.4 2 25 279 302 278 303 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF558-207 - 402 1.8e-67 220.9 70.0 7 10 4.8e-12 3.1e-09 36.9 0.8 2 26 307 331 306 331 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF558-207 - 402 1.8e-67 220.9 70.0 8 10 3.9e-12 2.5e-09 37.1 0.3 2 26 335 359 334 359 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF558-207 - 402 1.8e-67 220.9 70.0 9 10 1.8e-11 1.2e-08 35.0 2.9 2 26 363 387 362 387 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF558-207 - 402 1.8e-67 220.9 70.0 10 10 6.2 4e+03 -1.4 0.4 2 9 391 398 390 399 0.85 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZNF558-207 - 402 8.3e-52 170.9 77.3 1 9 2.2e-07 0.00014 22.1 1.9 2 23 153 174 153 174 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF558-207 - 402 8.3e-52 170.9 77.3 2 9 5.3e-08 3.4e-05 24.1 1.5 1 23 180 202 180 202 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF558-207 - 402 8.3e-52 170.9 77.3 3 9 1.5e-09 9.4e-07 29.0 0.8 1 23 208 230 208 230 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF558-207 - 402 8.3e-52 170.9 77.3 4 9 6.7e-05 0.043 14.3 6.7 1 23 236 258 236 258 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF558-207 - 402 8.3e-52 170.9 77.3 5 9 1.8e-06 0.0011 19.2 1.1 1 23 264 286 264 286 0.94 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF558-207 - 402 8.3e-52 170.9 77.3 6 9 3.2e-09 2e-06 27.9 3.9 1 23 292 314 292 314 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF558-207 - 402 8.3e-52 170.9 77.3 7 9 8.4e-09 5.4e-06 26.6 1.0 1 23 320 342 320 342 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF558-207 - 402 8.3e-52 170.9 77.3 8 9 7.9e-09 5.1e-06 26.7 0.3 1 23 348 370 348 370 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF558-207 - 402 8.3e-52 170.9 77.3 9 9 1.4e-08 8.8e-06 25.9 2.9 1 23 376 398 376 398 0.98 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZNF558-207 - 402 5.6e-33 110.8 70.2 1 9 9.4e-06 0.006 17.3 1.2 2 23 153 174 152 175 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF558-207 - 402 5.6e-33 110.8 70.2 2 9 2e-05 0.013 16.3 0.8 3 23 182 202 180 203 0.91 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF558-207 - 402 5.6e-33 110.8 70.2 3 9 7.1e-07 0.00046 20.8 0.7 1 23 208 230 208 231 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF558-207 - 402 5.6e-33 110.8 70.2 4 9 0.0013 0.82 10.7 5.5 1 23 236 258 236 259 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF558-207 - 402 5.6e-33 110.8 70.2 5 9 0.00024 0.15 13.0 0.8 1 19 264 282 264 286 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF558-207 - 402 5.6e-33 110.8 70.2 6 9 6.5e-06 0.0042 17.8 2.5 1 23 292 314 292 315 0.91 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF558-207 - 402 5.6e-33 110.8 70.2 7 9 3.4e-06 0.0022 18.7 1.0 1 23 320 342 320 343 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF558-207 - 402 5.6e-33 110.8 70.2 8 9 1.6e-06 0.001 19.7 0.3 1 23 348 370 348 371 0.97 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF558-207 - 402 5.6e-33 110.8 70.2 9 9 1.7e-06 0.0011 19.6 1.9 1 23 376 398 376 399 0.94 C2H2-type zinc finger KRAB PF01352.27 42 ZNF558-207 - 402 7.5e-28 95.9 0.2 1 1 1.8e-30 1.2e-27 95.3 0.2 1 42 42 83 42 83 0.99 KRAB box zf-C2H2_6 PF13912.6 27 ZNF558-207 - 402 1.8e-19 69.3 70.6 1 9 0.00013 0.085 12.9 1.1 3 24 153 174 153 177 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF558-207 - 402 1.8e-19 69.3 70.6 2 9 9.1e-05 0.058 13.4 0.8 2 24 180 202 180 205 0.83 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF558-207 - 402 1.8e-19 69.3 70.6 3 9 0.0046 2.9 8.0 0.4 2 24 208 230 208 233 0.83 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF558-207 - 402 1.8e-19 69.3 70.6 4 9 0.02 13 5.9 4.4 2 24 236 258 236 261 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF558-207 - 402 1.8e-19 69.3 70.6 5 9 3.5e-07 0.00022 21.1 2.4 1 24 263 286 263 289 0.92 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF558-207 - 402 1.8e-19 69.3 70.6 6 9 0.0048 3 7.9 2.3 2 24 292 314 292 317 0.84 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF558-207 - 402 1.8e-19 69.3 70.6 7 9 7.6e-07 0.00049 20.0 1.1 2 24 320 342 320 345 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF558-207 - 402 1.8e-19 69.3 70.6 8 9 9.6e-05 0.062 13.3 0.5 2 24 348 370 348 373 0.95 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF558-207 - 402 1.8e-19 69.3 70.6 9 9 0.0015 0.95 9.5 1.8 2 13 376 387 376 400 0.80 C2H2-type zinc finger zf-C2H2_jaz PF12171.8 27 ZNF558-207 - 402 2.1e-15 56.5 34.2 1 8 0.13 85 3.6 1.8 3 22 153 172 152 172 0.90 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF558-207 - 402 2.1e-15 56.5 34.2 2 8 0.017 11 6.5 0.1 2 21 180 199 179 200 0.88 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF558-207 - 402 2.1e-15 56.5 34.2 3 8 0.0001 0.064 13.6 0.0 2 22 208 228 207 228 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF558-207 - 402 2.1e-15 56.5 34.2 4 8 0.013 8.1 6.9 0.3 2 20 264 282 263 284 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF558-207 - 402 2.1e-15 56.5 34.2 5 8 0.00018 0.12 12.7 0.6 2 24 292 314 291 314 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF558-207 - 402 2.1e-15 56.5 34.2 6 8 0.00091 0.58 10.5 0.1 2 22 320 340 319 340 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF558-207 - 402 2.1e-15 56.5 34.2 7 8 0.00019 0.12 12.7 0.2 2 24 348 370 347 370 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF558-207 - 402 2.1e-15 56.5 34.2 8 8 0.002 1.3 9.4 0.4 2 21 376 395 375 396 0.91 Zinc-finger double-stranded RNA-binding zf-C2H2_11 PF16622.5 29 ZNF558-207 - 402 9.3e-07 28.5 51.0 1 8 0.81 5.2e+02 0.5 0.3 7 26 154 173 152 174 0.86 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF558-207 - 402 9.3e-07 28.5 51.0 2 8 0.0046 3 7.7 1.0 7 26 182 201 179 202 0.89 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF558-207 - 402 9.3e-07 28.5 51.0 3 8 5.8e-05 0.037 13.8 0.2 6 26 209 229 206 230 0.94 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF558-207 - 402 9.3e-07 28.5 51.0 4 8 0.0028 1.8 8.4 1.0 5 25 264 284 261 286 0.85 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF558-207 - 402 9.3e-07 28.5 51.0 5 8 0.57 3.6e+02 1.0 0.2 6 23 293 310 291 313 0.75 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF558-207 - 402 9.3e-07 28.5 51.0 6 8 2e-05 0.013 15.3 0.3 6 26 321 341 318 342 0.92 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF558-207 - 402 9.3e-07 28.5 51.0 7 8 0.19 1.2e+02 2.6 0.1 6 25 349 368 346 370 0.86 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF558-207 - 402 9.3e-07 28.5 51.0 8 8 0.00011 0.072 12.9 0.5 6 26 377 397 374 398 0.92 zinc-finger C2H2-type # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF558-207.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF558-207.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF558-207.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF558-207.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF558-207.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:08:57 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZNF560-201 - 790 2.3e-97 315.4 116.3 1 18 0.091 1.3e+02 3.3 0.0 7 24 206 223 205 223 0.87 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF560-201 - 790 2.3e-97 315.4 116.3 2 18 0.43 5.9e+02 1.2 0.1 2 25 307 330 306 331 0.73 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF560-201 - 790 2.3e-97 315.4 116.3 3 18 3.3e-05 0.046 14.2 0.4 8 25 341 358 334 359 0.89 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF560-201 - 790 2.3e-97 315.4 116.3 4 18 4.7e-09 6.5e-06 26.3 3.6 1 25 362 386 362 386 0.97 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF560-201 - 790 2.3e-97 315.4 116.3 5 18 1.6e-09 2.2e-06 27.8 0.5 4 26 393 415 390 415 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF560-201 - 790 2.3e-97 315.4 116.3 6 18 8.5e-07 0.0012 19.2 1.6 2 25 419 442 418 443 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF560-201 - 790 2.3e-97 315.4 116.3 7 18 9.8e-05 0.14 12.7 0.1 5 25 450 470 446 471 0.86 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF560-201 - 790 2.3e-97 315.4 116.3 8 18 0.00017 0.23 11.9 0.1 10 26 483 499 479 499 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF560-201 - 790 2.3e-97 315.4 116.3 9 18 2.1e-09 2.9e-06 27.4 2.1 2 25 503 526 502 527 0.89 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF560-201 - 790 2.3e-97 315.4 116.3 10 18 7.9e-10 1.1e-06 28.8 1.6 2 26 531 555 531 555 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF560-201 - 790 2.3e-97 315.4 116.3 11 18 2.2e-11 3e-08 33.7 1.3 2 25 559 582 558 583 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF560-201 - 790 2.3e-97 315.4 116.3 12 18 1.8e-11 2.4e-08 34.0 2.7 2 25 587 610 586 611 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF560-201 - 790 2.3e-97 315.4 116.3 13 18 1.1e-09 1.5e-06 28.4 0.2 1 25 614 638 614 638 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF560-201 - 790 2.3e-97 315.4 116.3 14 18 1.7e-09 2.4e-06 27.7 0.8 1 25 642 666 642 667 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF560-201 - 790 2.3e-97 315.4 116.3 15 18 0.00099 1.4 9.5 0.1 2 26 671 695 671 695 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF560-201 - 790 2.3e-97 315.4 116.3 16 18 0.00015 0.21 12.1 2.7 10 25 707 722 700 723 0.87 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF560-201 - 790 2.3e-97 315.4 116.3 17 18 5.3e-12 7.3e-09 35.7 0.8 1 25 726 750 726 751 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF560-201 - 790 2.3e-97 315.4 116.3 18 18 6.5e-11 9e-08 32.2 0.1 4 26 757 779 756 779 0.94 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZNF560-201 - 790 1.1e-63 208.2 138.4 1 17 0.022 31 5.3 0.0 7 22 298 313 298 313 0.93 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF560-201 - 790 1.1e-63 208.2 138.4 2 17 1 1.4e+03 0.0 0.0 5 13 324 332 323 344 0.81 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF560-201 - 790 1.1e-63 208.2 138.4 3 17 1.2e-08 1.6e-05 25.0 2.5 1 23 348 370 348 370 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF560-201 - 790 1.1e-63 208.2 138.4 4 17 1e-07 0.00014 22.1 2.2 1 23 376 398 376 398 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF560-201 - 790 1.1e-63 208.2 138.4 5 17 4.2e-05 0.059 13.9 0.3 3 21 406 424 404 426 0.95 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF560-201 - 790 1.1e-63 208.2 138.4 6 17 2.7e-06 0.0037 17.6 1.0 1 23 432 454 432 454 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF560-201 - 790 1.1e-63 208.2 138.4 7 17 1e-07 0.00014 22.1 0.5 1 23 488 510 488 510 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF560-201 - 790 1.1e-63 208.2 138.4 8 17 5.8e-08 7.9e-05 22.9 3.9 1 23 516 538 516 538 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF560-201 - 790 1.1e-63 208.2 138.4 9 17 2.7e-08 3.7e-05 23.9 5.5 1 23 544 566 544 566 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF560-201 - 790 1.1e-63 208.2 138.4 10 17 3.4e-08 4.7e-05 23.6 1.8 1 23 572 594 572 594 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF560-201 - 790 1.1e-63 208.2 138.4 11 17 3.3e-09 4.5e-06 26.8 1.4 1 23 600 622 600 622 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF560-201 - 790 1.1e-63 208.2 138.4 12 17 6.3e-06 0.0086 16.5 0.1 5 23 632 650 631 650 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF560-201 - 790 1.1e-63 208.2 138.4 13 17 6.2e-05 0.085 13.4 2.7 1 23 656 678 656 678 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF560-201 - 790 1.1e-63 208.2 138.4 14 17 0.62 8.5e+02 0.8 1.5 2 13 685 696 684 700 0.86 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF560-201 - 790 1.1e-63 208.2 138.4 15 17 1.2e-06 0.0017 18.7 4.1 1 23 712 734 712 734 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF560-201 - 790 1.1e-63 208.2 138.4 16 17 6.7e-08 9.2e-05 22.7 1.0 1 23 740 762 740 762 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF560-201 - 790 1.1e-63 208.2 138.4 17 17 9.7e-06 0.013 15.9 0.1 1 23 768 790 768 790 0.98 Zinc finger, C2H2 type KRAB PF01352.27 42 ZNF560-201 - 790 2.3e-48 161.6 5.4 1 2 9.4e-27 1.3e-23 82.3 0.5 1 42 12 53 12 53 0.98 KRAB box KRAB PF01352.27 42 ZNF560-201 - 790 2.3e-48 161.6 5.4 2 2 2.1e-26 2.9e-23 81.2 0.5 1 42 109 150 109 150 0.98 KRAB box zf-C2H2_4 PF13894.6 24 ZNF560-201 - 790 1.6e-44 146.7 129.6 1 17 2 2.7e+03 -0.3 3.6 3 15 216 227 214 231 0.73 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF560-201 - 790 1.6e-44 146.7 129.6 2 17 6.5 9e+03 -1.9 0.0 5 13 324 332 323 344 0.70 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF560-201 - 790 1.6e-44 146.7 129.6 3 17 4.5e-07 0.00062 20.4 0.9 1 23 348 370 348 371 0.97 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF560-201 - 790 1.6e-44 146.7 129.6 4 17 6.1e-07 0.00084 20.0 1.8 1 23 376 398 376 399 0.97 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF560-201 - 790 1.6e-44 146.7 129.6 5 17 0.0015 2.1 9.4 0.3 2 21 405 424 404 426 0.91 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF560-201 - 790 1.6e-44 146.7 129.6 6 17 3e-06 0.0042 17.8 0.9 1 23 432 454 432 455 0.97 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF560-201 - 790 1.6e-44 146.7 129.6 7 17 1.2e-06 0.0016 19.1 0.7 3 23 490 510 488 511 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF560-201 - 790 1.6e-44 146.7 129.6 8 17 1.9e-06 0.0026 18.5 3.1 1 23 516 538 516 539 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF560-201 - 790 1.6e-44 146.7 129.6 9 17 8.8e-06 0.012 16.4 3.7 1 23 544 566 544 567 0.91 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF560-201 - 790 1.6e-44 146.7 129.6 10 17 2.2e-05 0.031 15.1 1.3 1 23 572 594 572 595 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF560-201 - 790 1.6e-44 146.7 129.6 11 17 1.8e-06 0.0025 18.5 1.0 1 23 600 622 600 623 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF560-201 - 790 1.6e-44 146.7 129.6 12 17 0.0021 2.8 9.0 0.1 5 23 632 650 631 651 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF560-201 - 790 1.6e-44 146.7 129.6 13 17 0.00016 0.22 12.5 2.0 1 23 656 678 656 679 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF560-201 - 790 1.6e-44 146.7 129.6 14 17 0.27 3.7e+02 2.4 0.9 2 19 685 702 684 706 0.80 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF560-201 - 790 1.6e-44 146.7 129.6 15 17 4e-06 0.0055 17.4 2.9 1 23 712 734 712 735 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF560-201 - 790 1.6e-44 146.7 129.6 16 17 1e-05 0.014 16.2 0.7 1 23 740 762 740 763 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF560-201 - 790 1.6e-44 146.7 129.6 17 17 2.5e-05 0.034 15.0 0.2 1 23 768 790 768 790 0.96 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF560-201 - 790 2.3e-25 88.0 124.9 1 17 2.3 3.2e+03 -1.7 2.5 2 11 214 223 213 224 0.87 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF560-201 - 790 2.3e-25 88.0 124.9 2 17 8.8 1.2e+04 -3.6 0.0 17 23 307 313 299 313 0.73 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF560-201 - 790 2.3e-25 88.0 124.9 3 17 4.6e-06 0.0064 16.5 0.9 2 24 348 370 348 371 0.98 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF560-201 - 790 2.3e-25 88.0 124.9 4 17 0.022 30 4.8 2.3 2 11 376 385 376 386 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF560-201 - 790 2.3e-25 88.0 124.9 5 17 2.5e-06 0.0035 17.3 0.6 2 25 404 427 404 429 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF560-201 - 790 2.3e-25 88.0 124.9 6 17 3.1e-07 0.00042 20.2 0.6 2 24 432 454 431 457 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF560-201 - 790 2.3e-25 88.0 124.9 7 17 3e-09 4.2e-06 26.6 0.3 2 24 488 510 487 513 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF560-201 - 790 2.3e-25 88.0 124.9 8 17 0.0062 8.6 6.5 2.0 2 25 516 539 516 541 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF560-201 - 790 2.3e-25 88.0 124.9 9 17 0.00055 0.75 9.9 4.8 2 24 544 566 543 569 0.95 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF560-201 - 790 2.3e-25 88.0 124.9 10 17 0.011 15 5.7 1.7 2 25 572 595 572 597 0.91 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF560-201 - 790 2.3e-25 88.0 124.9 11 17 4.7e-05 0.065 13.2 1.4 2 24 600 622 600 624 0.97 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF560-201 - 790 2.3e-25 88.0 124.9 12 17 1 1.4e+03 -0.6 0.1 7 24 633 650 631 651 0.84 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF560-201 - 790 2.3e-25 88.0 124.9 13 17 0.0027 3.7 7.6 2.5 2 25 656 679 656 681 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF560-201 - 790 2.3e-25 88.0 124.9 14 17 0.16 2.3e+02 2.0 0.3 3 12 685 694 685 694 0.92 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF560-201 - 790 2.3e-25 88.0 124.9 15 17 0.077 1.1e+02 3.0 1.5 2 12 712 722 712 732 0.90 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF560-201 - 790 2.3e-25 88.0 124.9 16 17 3.9e-05 0.054 13.5 0.9 2 25 740 763 740 765 0.82 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF560-201 - 790 2.3e-25 88.0 124.9 17 17 9.8e-07 0.0013 18.6 0.4 2 24 768 790 768 790 0.98 C2H2-type zinc finger zf-C2H2_11 PF16622.5 29 ZNF560-201 - 790 1.3e-08 34.4 74.2 1 16 3.6 5e+03 -2.6 0.1 9 17 324 332 323 334 0.78 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF560-201 - 790 1.3e-08 34.4 74.2 2 16 0.024 32 4.4 0.0 5 25 348 368 345 370 0.89 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF560-201 - 790 1.3e-08 34.4 74.2 3 16 0.016 23 4.9 0.1 5 15 376 386 375 393 0.90 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF560-201 - 790 1.3e-08 34.4 74.2 4 16 0.3 4.2e+02 0.8 0.1 7 20 406 419 404 424 0.74 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF560-201 - 790 1.3e-08 34.4 74.2 5 16 6.9e-05 0.096 12.5 0.2 3 25 430 452 429 454 0.91 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF560-201 - 790 1.3e-08 34.4 74.2 6 16 0.04 55 3.7 0.6 7 25 490 508 487 510 0.91 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF560-201 - 790 1.3e-08 34.4 74.2 7 16 1.9e-05 0.027 14.2 1.1 5 25 516 536 513 538 0.93 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF560-201 - 790 1.3e-08 34.4 74.2 8 16 0.0029 4 7.3 2.9 5 25 544 564 541 566 0.93 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF560-201 - 790 1.3e-08 34.4 74.2 9 16 0.0021 2.9 7.8 0.1 6 25 573 592 570 592 0.92 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF560-201 - 790 1.3e-08 34.4 74.2 10 16 0.0047 6.4 6.6 0.1 6 25 601 620 598 621 0.92 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF560-201 - 790 1.3e-08 34.4 74.2 11 16 1.6 2.2e+03 -1.5 0.0 9 25 632 648 631 649 0.88 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF560-201 - 790 1.3e-08 34.4 74.2 12 16 0.23 3.2e+02 1.2 0.6 5 24 656 675 655 677 0.92 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF560-201 - 790 1.3e-08 34.4 74.2 13 16 2 2.7e+03 -1.8 0.1 4 14 683 693 681 694 0.78 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF560-201 - 790 1.3e-08 34.4 74.2 14 16 0.00073 1 9.2 0.3 5 26 712 733 711 734 0.94 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF560-201 - 790 1.3e-08 34.4 74.2 15 16 0.073 1e+02 2.8 0.1 5 17 740 753 737 763 0.79 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF560-201 - 790 1.3e-08 34.4 74.2 16 16 0.069 95 2.9 0.2 7 16 770 779 767 782 0.90 zinc-finger C2H2-type # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF560-201.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF560-201.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF560-201.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF560-201.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF560-201.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:08:57 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF560-202.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF560-202.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF560-202.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF560-202.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF560-202.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:08:58 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZNF561-201 - 486 1.8e-64 211.4 72.8 1 13 6.1 3.6e+03 -1.3 0.2 17 24 120 127 119 128 0.90 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF561-201 - 486 1.8e-64 211.4 72.8 2 13 4.1 2.5e+03 -0.8 0.0 2 11 133 142 133 145 0.82 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF561-201 - 486 1.8e-64 211.4 72.8 3 13 0.00034 0.2 12.1 0.2 14 26 196 208 186 208 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF561-201 - 486 1.8e-64 211.4 72.8 4 13 0.11 63 4.2 0.0 2 13 212 223 211 229 0.83 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF561-201 - 486 1.8e-64 211.4 72.8 5 13 0.018 11 6.7 2.5 7 26 245 264 237 264 0.86 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF561-201 - 486 1.8e-64 211.4 72.8 6 13 4.3e-06 0.0026 18.1 1.4 7 26 273 292 272 292 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF561-201 - 486 1.8e-64 211.4 72.8 7 13 7.1e-10 4.2e-07 30.1 0.6 2 26 296 320 296 320 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF561-201 - 486 1.8e-64 211.4 72.8 8 13 6.7e-10 4e-07 30.2 0.1 2 25 324 347 323 348 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF561-201 - 486 1.8e-64 211.4 72.8 9 13 1.7e-11 1e-08 35.2 0.3 2 26 352 376 351 376 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF561-201 - 486 1.8e-64 211.4 72.8 10 13 5.7e-11 3.4e-08 33.6 0.1 2 25 380 403 379 404 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF561-201 - 486 1.8e-64 211.4 72.8 11 13 2.9e-09 1.8e-06 28.1 1.2 3 25 409 431 408 432 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF561-201 - 486 1.8e-64 211.4 72.8 12 13 3.7e-11 2.2e-08 34.1 0.4 2 25 436 459 435 459 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF561-201 - 486 1.8e-64 211.4 72.8 13 13 2.6e-08 1.6e-05 25.1 0.4 2 18 464 480 463 481 0.94 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZNF561-201 - 486 9e-49 161.3 65.2 1 11 6.3e-05 0.038 14.5 3.0 2 21 119 138 118 139 0.93 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF561-201 - 486 9e-49 161.3 65.2 2 11 0.21 1.2e+02 3.4 0.0 6 20 174 188 174 190 0.91 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF561-201 - 486 9e-49 161.3 65.2 3 11 2.8e-06 0.0017 18.7 0.4 1 23 197 219 197 219 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF561-201 - 486 9e-49 161.3 65.2 4 11 0.013 7.8 7.2 0.2 5 16 257 268 255 270 0.89 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF561-201 - 486 9e-49 161.3 65.2 5 11 4.3e-08 2.6e-05 24.4 1.6 1 23 281 303 281 303 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF561-201 - 486 9e-49 161.3 65.2 6 11 1.8e-08 1.1e-05 25.6 3.2 1 23 309 331 309 331 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF561-201 - 486 9e-49 161.3 65.2 7 11 3.4e-07 0.0002 21.6 0.1 1 23 337 359 337 359 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF561-201 - 486 9e-49 161.3 65.2 8 11 1.3e-08 7.9e-06 26.0 0.6 1 23 365 387 365 387 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF561-201 - 486 9e-49 161.3 65.2 9 11 4.1e-06 0.0025 18.2 1.3 1 23 393 415 393 415 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF561-201 - 486 9e-49 161.3 65.2 10 11 1.6e-06 0.00096 19.5 0.6 1 23 421 443 421 443 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF561-201 - 486 9e-49 161.3 65.2 11 11 9.6e-07 0.00057 20.2 0.2 1 23 449 471 449 471 0.98 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZNF561-201 - 486 1.2e-34 115.9 65.6 1 11 0.0032 1.9 9.6 2.7 3 21 120 138 118 140 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF561-201 - 486 1.2e-34 115.9 65.6 2 11 0.83 4.9e+02 2.0 0.0 6 21 174 189 172 191 0.83 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF561-201 - 486 1.2e-34 115.9 65.6 3 11 2.1e-05 0.012 16.4 0.3 1 23 197 219 197 220 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF561-201 - 486 1.2e-34 115.9 65.6 4 11 0.2 1.2e+02 3.9 0.1 4 16 256 268 253 276 0.81 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF561-201 - 486 1.2e-34 115.9 65.6 5 11 7.6e-06 0.0045 17.7 1.4 1 23 281 303 281 304 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF561-201 - 486 1.2e-34 115.9 65.6 6 11 2e-06 0.0012 19.5 2.1 1 23 309 331 309 332 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF561-201 - 486 1.2e-34 115.9 65.6 7 11 8e-06 0.0048 17.6 0.1 1 23 337 359 337 360 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF561-201 - 486 1.2e-34 115.9 65.6 8 11 6.1e-06 0.0037 18.0 0.4 1 23 365 387 365 388 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF561-201 - 486 1.2e-34 115.9 65.6 9 11 3.6e-05 0.022 15.6 1.1 1 23 393 415 393 416 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF561-201 - 486 1.2e-34 115.9 65.6 10 11 2.8e-06 0.0017 19.0 0.6 1 23 421 443 421 444 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF561-201 - 486 1.2e-34 115.9 65.6 11 11 2.4e-05 0.014 16.1 0.4 1 23 449 471 449 472 0.95 C2H2-type zinc finger KRAB PF01352.27 42 ZNF561-201 - 486 1.5e-22 78.9 1.2 1 1 4.4e-25 2.6e-22 78.2 1.2 1 41 40 80 40 81 0.98 KRAB box zf-C2H2_6 PF13912.6 27 ZNF561-201 - 486 1.1e-13 50.7 76.0 1 12 0.21 1.3e+02 2.8 1.0 4 21 120 137 119 138 0.81 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF561-201 - 486 1.1e-13 50.7 76.0 2 12 5.6 3.3e+03 -1.8 0.1 7 11 174 178 174 179 0.91 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF561-201 - 486 1.1e-13 50.7 76.0 3 12 1.3e-05 0.0077 16.2 0.7 2 21 197 216 197 221 0.92 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF561-201 - 486 1.1e-13 50.7 76.0 4 12 1.4 8.1e+02 0.2 0.4 5 12 256 263 256 265 0.84 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF561-201 - 486 1.1e-13 50.7 76.0 5 12 0.0006 0.36 10.9 0.9 2 12 281 291 280 292 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF561-201 - 486 1.1e-13 50.7 76.0 6 12 1.3e-05 0.0075 16.2 1.6 2 24 309 331 309 334 0.96 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF561-201 - 486 1.1e-13 50.7 76.0 7 12 0.00099 0.59 10.2 0.8 2 25 337 360 337 362 0.91 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF561-201 - 486 1.1e-13 50.7 76.0 8 12 2e-06 0.0012 18.8 0.6 2 24 365 387 365 390 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF561-201 - 486 1.1e-13 50.7 76.0 9 12 0.012 7.4 6.7 0.5 2 11 393 402 393 404 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF561-201 - 486 1.1e-13 50.7 76.0 10 12 4.3 2.6e+03 -1.4 0.4 19 25 410 416 409 418 0.83 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF561-201 - 486 1.1e-13 50.7 76.0 11 12 0.00036 0.22 11.6 0.3 2 24 421 443 421 446 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF561-201 - 486 1.1e-13 50.7 76.0 12 12 0.006 3.6 7.7 0.7 2 11 449 458 449 459 0.92 C2H2-type zinc finger zf-C2H2_jaz PF12171.8 27 ZNF561-201 - 486 6.4e-11 42.3 39.1 1 8 0.0065 3.9 7.9 0.3 2 21 197 216 196 216 0.86 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF561-201 - 486 6.4e-11 42.3 39.1 2 8 0.0031 1.8 8.9 0.9 2 21 281 300 280 301 0.89 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF561-201 - 486 6.4e-11 42.3 39.1 3 8 0.00012 0.071 13.4 0.2 2 24 309 331 308 331 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF561-201 - 486 6.4e-11 42.3 39.1 4 8 5.6 3.3e+03 -1.5 0.3 2 7 337 342 336 343 0.87 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF561-201 - 486 6.4e-11 42.3 39.1 5 8 0.0023 1.4 9.3 0.0 4 21 367 384 364 385 0.90 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF561-201 - 486 6.4e-11 42.3 39.1 6 8 9.2e-06 0.0055 17.0 0.2 2 24 393 415 392 416 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF561-201 - 486 6.4e-11 42.3 39.1 7 8 0.026 16 5.9 0.1 2 24 421 443 420 443 0.87 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF561-201 - 486 6.4e-11 42.3 39.1 8 8 0.1 61 4.1 0.0 2 21 449 468 448 469 0.77 Zinc-finger double-stranded RNA-binding zf-C2H2_11 PF16622.5 29 ZNF561-201 - 486 1.3e-08 34.5 48.1 1 10 0.045 27 4.6 1.6 5 26 118 139 117 140 0.93 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF561-201 - 486 1.3e-08 34.5 48.1 2 10 5.8 3.4e+03 -2.1 0.0 10 24 174 188 173 190 0.84 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF561-201 - 486 1.3e-08 34.5 48.1 3 10 0.011 6.6 6.6 0.0 5 26 197 218 195 219 0.92 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF561-201 - 486 1.3e-08 34.5 48.1 4 10 0.0021 1.3 8.9 1.0 4 26 280 302 278 303 0.91 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF561-201 - 486 1.3e-08 34.5 48.1 5 10 0.0082 4.9 7.0 0.5 5 24 309 328 308 331 0.89 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF561-201 - 486 1.3e-08 34.5 48.1 6 10 0.088 52 3.7 0.1 6 23 338 355 336 357 0.81 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF561-201 - 486 1.3e-08 34.5 48.1 7 10 3.8e-06 0.0023 17.7 0.3 5 26 365 386 363 387 0.95 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF561-201 - 486 1.3e-08 34.5 48.1 8 10 0.21 1.2e+02 2.5 0.1 6 14 394 402 391 413 0.75 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF561-201 - 486 1.3e-08 34.5 48.1 9 10 4.2 2.5e+03 -1.6 0.3 7 24 423 440 421 442 0.68 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF561-201 - 486 1.3e-08 34.5 48.1 10 10 0.00016 0.094 12.5 0.5 7 26 451 470 449 471 0.95 zinc-finger C2H2-type # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF561-201.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF561-201.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF561-201.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF561-201.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF561-201.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:08:58 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZNF561-202 - 350 6.5e-68 222.3 65.0 1 11 0.00025 0.13 12.8 0.2 14 26 60 72 49 72 0.90 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF561-202 - 350 6.5e-68 222.3 65.0 2 11 0.084 43 4.8 0.0 2 13 76 87 75 93 0.83 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF561-202 - 350 6.5e-68 222.3 65.0 3 11 0.014 7.1 7.3 2.5 7 26 109 128 101 128 0.86 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF561-202 - 350 6.5e-68 222.3 65.0 4 11 3.4e-06 0.0018 18.7 1.4 7 26 137 156 136 156 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF561-202 - 350 6.5e-68 222.3 65.0 5 11 5.5e-10 2.8e-07 30.6 0.6 2 26 160 184 160 184 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF561-202 - 350 6.5e-68 222.3 65.0 6 11 5.2e-10 2.7e-07 30.7 0.1 2 25 188 211 187 212 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF561-202 - 350 6.5e-68 222.3 65.0 7 11 1.3e-11 6.7e-09 35.8 0.3 2 26 216 240 215 240 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF561-202 - 350 6.5e-68 222.3 65.0 8 11 4.4e-11 2.3e-08 34.1 0.1 2 25 244 267 243 268 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF561-202 - 350 6.5e-68 222.3 65.0 9 11 2.3e-09 1.2e-06 28.7 1.2 3 25 273 295 272 296 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF561-202 - 350 6.5e-68 222.3 65.0 10 11 2.9e-11 1.5e-08 34.7 0.4 2 25 300 323 299 323 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF561-202 - 350 6.5e-68 222.3 65.0 11 11 2.1e-08 1.1e-05 25.7 0.4 2 18 328 344 327 345 0.94 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZNF561-202 - 350 6.3e-48 158.6 54.3 1 10 0.17 85 3.9 0.0 6 20 38 52 38 54 0.91 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF561-202 - 350 6.3e-48 158.6 54.3 2 10 2.2e-06 0.0011 19.3 0.4 1 23 61 83 61 83 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF561-202 - 350 6.3e-48 158.6 54.3 3 10 0.01 5.3 7.7 0.2 5 16 121 132 119 134 0.89 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF561-202 - 350 6.3e-48 158.6 54.3 4 10 3.3e-08 1.7e-05 25.0 1.6 1 23 145 167 145 167 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF561-202 - 350 6.3e-48 158.6 54.3 5 10 1.4e-08 7.2e-06 26.2 3.2 1 23 173 195 173 195 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF561-202 - 350 6.3e-48 158.6 54.3 6 10 2.7e-07 0.00014 22.2 0.1 1 23 201 223 201 223 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF561-202 - 350 6.3e-48 158.6 54.3 7 10 1e-08 5.3e-06 26.6 0.6 1 23 229 251 229 251 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF561-202 - 350 6.3e-48 158.6 54.3 8 10 3.2e-06 0.0017 18.7 1.3 1 23 257 279 257 279 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF561-202 - 350 6.3e-48 158.6 54.3 9 10 1.2e-06 0.00064 20.0 0.6 1 23 285 307 285 307 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF561-202 - 350 6.3e-48 158.6 54.3 10 10 7.5e-07 0.00038 20.7 0.2 1 23 313 335 313 335 0.98 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZNF561-202 - 350 1.4e-35 118.9 53.8 1 10 0.65 3.3e+02 2.6 0.0 6 21 38 53 36 55 0.83 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF561-202 - 350 1.4e-35 118.9 53.8 2 10 1.6e-05 0.0082 16.9 0.3 1 23 61 83 61 84 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF561-202 - 350 1.4e-35 118.9 53.8 3 10 0.16 82 4.5 0.1 3 16 119 132 117 140 0.81 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF561-202 - 350 1.4e-35 118.9 53.8 4 10 5.9e-06 0.003 18.3 1.4 1 23 145 167 145 168 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF561-202 - 350 1.4e-35 118.9 53.8 5 10 1.6e-06 0.0008 20.0 2.1 1 23 173 195 173 196 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF561-202 - 350 1.4e-35 118.9 53.8 6 10 6.2e-06 0.0032 18.2 0.1 1 23 201 223 201 224 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF561-202 - 350 1.4e-35 118.9 53.8 7 10 4.7e-06 0.0024 18.5 0.4 1 23 229 251 229 252 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF561-202 - 350 1.4e-35 118.9 53.8 8 10 2.8e-05 0.014 16.1 1.1 1 23 257 279 257 280 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF561-202 - 350 1.4e-35 118.9 53.8 9 10 2.2e-06 0.0011 19.6 0.6 1 23 285 307 285 308 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF561-202 - 350 1.4e-35 118.9 53.8 10 10 1.9e-05 0.0096 16.7 0.4 1 23 313 335 313 336 0.95 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF561-202 - 350 3.6e-16 58.7 67.9 1 11 4.5 2.3e+03 -1.3 0.1 7 11 38 42 38 43 0.91 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF561-202 - 350 3.6e-16 58.7 67.9 2 11 1e-05 0.0052 16.8 0.7 2 21 61 80 61 85 0.92 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF561-202 - 350 3.6e-16 58.7 67.9 3 11 1.1 5.6e+02 0.7 0.4 5 12 120 127 120 129 0.84 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF561-202 - 350 3.6e-16 58.7 67.9 4 11 0.00048 0.25 11.4 0.9 2 12 145 155 144 156 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF561-202 - 350 3.6e-16 58.7 67.9 5 11 9.8e-06 0.005 16.8 1.6 2 24 173 195 173 198 0.96 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF561-202 - 350 3.6e-16 58.7 67.9 6 11 0.00077 0.39 10.8 0.8 2 25 201 224 201 226 0.91 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF561-202 - 350 3.6e-16 58.7 67.9 7 11 1.6e-06 0.00081 19.3 0.6 2 24 229 251 229 254 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF561-202 - 350 3.6e-16 58.7 67.9 8 11 0.01 5.1 7.2 0.5 2 11 257 266 257 268 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF561-202 - 350 3.6e-16 58.7 67.9 9 11 3.5 1.8e+03 -0.9 0.4 19 25 274 280 273 282 0.83 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF561-202 - 350 3.6e-16 58.7 67.9 10 11 0.00028 0.14 12.1 0.3 2 24 285 307 285 310 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF561-202 - 350 3.6e-16 58.7 67.9 11 11 0.0048 2.5 8.2 0.7 2 11 313 322 313 323 0.92 C2H2-type zinc finger zf-C2H2_jaz PF12171.8 27 ZNF561-202 - 350 1.1e-12 47.8 36.6 1 8 0.0051 2.6 8.4 0.3 2 21 61 80 60 80 0.86 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF561-202 - 350 1.1e-12 47.8 36.6 2 8 0.0024 1.2 9.5 0.9 2 21 145 164 144 165 0.89 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF561-202 - 350 1.1e-12 47.8 36.6 3 8 9.3e-05 0.048 14.0 0.2 2 24 173 195 172 195 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF561-202 - 350 1.1e-12 47.8 36.6 4 8 4.2 2.2e+03 -0.9 0.2 2 7 201 206 200 209 0.89 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF561-202 - 350 1.1e-12 47.8 36.6 5 8 0.0018 0.93 9.9 0.0 4 21 231 248 228 249 0.90 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF561-202 - 350 1.1e-12 47.8 36.6 6 8 7.2e-06 0.0037 17.5 0.2 2 24 257 279 256 280 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF561-202 - 350 1.1e-12 47.8 36.6 7 8 0.021 11 6.5 0.1 2 24 285 307 284 307 0.87 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF561-202 - 350 1.1e-12 47.8 36.6 8 8 0.08 41 4.6 0.0 2 21 313 332 312 333 0.77 Zinc-finger double-stranded RNA-binding zf-C2H2_11 PF16622.5 29 ZNF561-202 - 350 1.6e-10 40.6 38.8 1 10 4.6 2.4e+03 -1.6 0.0 10 24 38 52 37 54 0.84 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF561-202 - 350 1.6e-10 40.6 38.8 2 10 0.0087 4.4 7.1 0.0 5 26 61 82 59 83 0.92 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF561-202 - 350 1.6e-10 40.6 38.8 3 10 8.1 4.2e+03 -2.4 0.1 9 15 121 127 118 130 0.86 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF561-202 - 350 1.6e-10 40.6 38.8 4 10 0.0016 0.84 9.5 1.0 4 26 144 166 142 167 0.91 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF561-202 - 350 1.6e-10 40.6 38.8 5 10 0.0064 3.3 7.6 0.5 5 24 173 192 172 195 0.89 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF561-202 - 350 1.6e-10 40.6 38.8 6 10 0.069 36 4.3 0.1 6 23 202 219 200 221 0.81 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF561-202 - 350 1.6e-10 40.6 38.8 7 10 3e-06 0.0015 18.2 0.3 5 26 229 250 227 251 0.95 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF561-202 - 350 1.6e-10 40.6 38.8 8 10 0.17 85 3.0 0.1 6 14 258 266 255 277 0.75 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF561-202 - 350 1.6e-10 40.6 38.8 9 10 3.3 1.7e+03 -1.1 0.3 7 24 287 304 285 306 0.68 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF561-202 - 350 1.6e-10 40.6 38.8 10 10 0.00012 0.063 13.0 0.5 7 26 315 334 313 335 0.95 zinc-finger C2H2-type XPA_N PF01286.18 32 ZNF561-202 - 350 8.3e-10 38.5 33.7 1 9 0.015 7.5 6.7 0.2 3 12 62 71 60 72 0.89 XPA protein N-terminal XPA_N PF01286.18 32 ZNF561-202 - 350 8.3e-10 38.5 33.7 2 9 2.7 1.4e+03 -0.5 0.1 6 12 121 127 120 133 0.81 XPA protein N-terminal XPA_N PF01286.18 32 ZNF561-202 - 350 8.3e-10 38.5 33.7 3 9 0.041 21 5.3 2.2 3 14 146 157 145 162 0.90 XPA protein N-terminal XPA_N PF01286.18 32 ZNF561-202 - 350 8.3e-10 38.5 33.7 4 9 0.048 25 5.0 0.1 3 14 174 185 172 190 0.88 XPA protein N-terminal XPA_N PF01286.18 32 ZNF561-202 - 350 8.3e-10 38.5 33.7 5 9 0.012 6.1 7.0 0.1 3 12 202 211 200 213 0.89 XPA protein N-terminal XPA_N PF01286.18 32 ZNF561-202 - 350 8.3e-10 38.5 33.7 6 9 0.0017 0.88 9.7 0.1 3 14 230 241 228 242 0.91 XPA protein N-terminal XPA_N PF01286.18 32 ZNF561-202 - 350 8.3e-10 38.5 33.7 7 9 0.0028 1.5 9.0 0.1 3 14 258 269 256 270 0.91 XPA protein N-terminal XPA_N PF01286.18 32 ZNF561-202 - 350 8.3e-10 38.5 33.7 8 9 0.14 71 3.6 0.0 3 14 286 297 284 300 0.88 XPA protein N-terminal XPA_N PF01286.18 32 ZNF561-202 - 350 8.3e-10 38.5 33.7 9 9 0.002 1 9.5 0.1 3 14 314 325 312 331 0.87 XPA protein N-terminal C1_1 PF00130.22 53 ZNF561-202 - 350 3.9e-08 33.0 24.7 1 7 0.0089 4.6 7.2 0.1 7 21 56 70 51 83 0.79 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF561-202 - 350 3.9e-08 33.0 24.7 2 7 0.00064 0.33 10.9 0.3 9 46 114 163 108 169 0.85 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF561-202 - 350 3.9e-08 33.0 24.7 3 7 9.8e-05 0.05 13.5 0.6 4 37 165 209 163 213 0.85 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF561-202 - 350 3.9e-08 33.0 24.7 4 7 0.0013 0.69 9.8 0.6 9 36 198 236 191 238 0.85 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF561-202 - 350 3.9e-08 33.0 24.7 5 7 0.0067 3.4 7.6 1.2 3 36 220 264 218 266 0.79 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF561-202 - 350 3.9e-08 33.0 24.7 6 7 0.38 2e+02 2.0 5.2 7 34 280 318 246 322 0.55 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF561-202 - 350 3.9e-08 33.0 24.7 7 7 0.14 71 3.4 0.1 7 21 308 322 303 344 0.71 Phorbol esters/diacylglycerol binding domain (C1 domain) zf-trcl PF13451.6 48 ZNF561-202 - 350 6.9e-08 32.3 30.1 1 9 0.0089 4.6 7.2 0.1 4 18 60 74 58 79 0.87 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF561-202 - 350 6.9e-08 32.3 30.1 2 9 5.5 2.8e+03 -1.7 0.1 8 15 120 127 115 131 0.80 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF561-202 - 350 6.9e-08 32.3 30.1 3 9 0.04 20 5.1 0.2 3 14 143 154 141 157 0.89 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF561-202 - 350 6.9e-08 32.3 30.1 4 9 0.32 1.6e+02 2.3 0.2 3 15 171 183 171 187 0.80 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF561-202 - 350 6.9e-08 32.3 30.1 5 9 0.045 23 5.0 0.1 3 14 199 210 199 215 0.85 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF561-202 - 350 6.9e-08 32.3 30.1 6 9 0.013 6.5 6.7 0.2 3 15 227 239 226 243 0.88 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF561-202 - 350 6.9e-08 32.3 30.1 7 9 0.025 13 5.8 0.1 3 15 255 267 253 275 0.88 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF561-202 - 350 6.9e-08 32.3 30.1 8 9 0.005 2.5 8.0 0.0 3 17 283 297 281 299 0.89 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF561-202 - 350 6.9e-08 32.3 30.1 9 9 0.005 2.5 8.0 0.1 3 15 311 323 309 327 0.88 Probable zinc-ribbon domain zinc_ribbon_15 PF17032.5 86 ZNF561-202 - 350 2.1e-07 31.6 28.0 1 5 0.23 1.2e+02 3.5 0.0 35 73 30 68 23 76 0.80 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF561-202 - 350 2.1e-07 31.6 28.0 2 5 0.0036 1.9 9.3 3.0 28 77 107 156 103 161 0.90 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF561-202 - 350 2.1e-07 31.6 28.0 3 5 0.00023 0.12 13.2 1.1 38 75 173 210 162 215 0.88 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF561-202 - 350 2.1e-07 31.6 28.0 4 5 0.00038 0.19 12.5 1.5 31 76 223 267 212 275 0.83 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF561-202 - 350 2.1e-07 31.6 28.0 5 5 0.01 5.2 7.9 0.2 31 75 278 322 274 329 0.85 zinc-ribbon family zf_UBZ PF18439.1 32 ZNF561-202 - 350 2.9e-07 29.9 31.8 1 9 0.021 11 5.7 0.1 3 13 61 71 59 80 0.78 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF561-202 - 350 2.9e-07 29.9 31.8 2 9 6.2 3.2e+03 -2.2 0.0 7 12 121 126 120 129 0.84 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF561-202 - 350 2.9e-07 29.9 31.8 3 9 0.087 44 3.8 1.2 2 12 144 154 143 159 0.86 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF561-202 - 350 2.9e-07 29.9 31.8 4 9 0.029 15 5.3 0.1 4 20 174 191 171 192 0.93 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF561-202 - 350 2.9e-07 29.9 31.8 5 9 0.035 18 5.0 0.2 3 13 201 211 199 214 0.85 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF561-202 - 350 2.9e-07 29.9 31.8 6 9 0.0029 1.5 8.5 0.1 3 20 229 247 227 248 0.85 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF561-202 - 350 2.9e-07 29.9 31.8 7 9 0.026 14 5.4 0.1 3 17 257 271 255 276 0.81 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF561-202 - 350 2.9e-07 29.9 31.8 8 9 0.054 28 4.4 0.0 3 13 285 295 283 303 0.83 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF561-202 - 350 2.9e-07 29.9 31.8 9 9 0.0014 0.73 9.5 0.1 3 18 313 328 311 332 0.83 Ubiquitin-Binding Zinc Finger Zn-ribbon_8 PF09723.10 40 ZNF561-202 - 350 4.6e-07 29.8 41.8 1 8 0.0017 0.89 9.7 0.5 6 21 61 76 60 90 0.81 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF561-202 - 350 4.6e-07 29.8 41.8 2 8 1.9 9.6e+02 0.0 0.0 9 19 120 130 118 139 0.79 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF561-202 - 350 4.6e-07 29.8 41.8 3 8 0.0016 0.82 9.8 3.1 6 38 145 184 144 186 0.84 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF561-202 - 350 4.6e-07 29.8 41.8 4 8 0.0003 0.16 12.1 5.1 6 35 201 237 198 241 0.80 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF561-202 - 350 4.6e-07 29.8 41.8 5 8 0.00028 0.14 12.3 4.1 6 34 229 264 228 267 0.83 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF561-202 - 350 4.6e-07 29.8 41.8 6 8 0.0057 2.9 8.1 2.4 6 34 257 292 255 295 0.73 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF561-202 - 350 4.6e-07 29.8 41.8 7 8 0.02 10 6.3 2.0 6 34 285 320 283 322 0.75 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF561-202 - 350 4.6e-07 29.8 41.8 8 8 0.0096 4.9 7.3 0.6 6 22 313 329 311 345 0.77 Zinc ribbon domain # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF561-202.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF561-202.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF561-202.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF561-202.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF561-202.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:08:58 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF561-203.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF561-203.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF561-203.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF561-203.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF561-203.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:08:59 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZNF561-204 - 417 1.6e-65 214.8 72.5 1 13 5 3.1e+03 -1.1 0.2 17 24 51 58 50 59 0.90 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF561-204 - 417 1.6e-65 214.8 72.5 2 13 3.4 2.1e+03 -0.6 0.0 2 11 64 73 64 76 0.82 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF561-204 - 417 1.6e-65 214.8 72.5 3 13 0.00025 0.16 12.5 0.2 14 26 127 139 116 139 0.90 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF561-204 - 417 1.6e-65 214.8 72.5 4 13 0.086 53 4.5 0.0 2 13 143 154 142 160 0.83 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF561-204 - 417 1.6e-65 214.8 72.5 5 13 0.014 8.8 7.0 2.5 7 26 176 195 168 195 0.86 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF561-204 - 417 1.6e-65 214.8 72.5 6 13 3.5e-06 0.0022 18.4 1.4 7 26 204 223 203 223 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF561-204 - 417 1.6e-65 214.8 72.5 7 13 5.7e-10 3.5e-07 30.3 0.6 2 26 227 251 227 251 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF561-204 - 417 1.6e-65 214.8 72.5 8 13 5.4e-10 3.3e-07 30.4 0.1 2 25 255 278 254 279 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF561-204 - 417 1.6e-65 214.8 72.5 9 13 1.3e-11 8.3e-09 35.5 0.3 2 26 283 307 282 307 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF561-204 - 417 1.6e-65 214.8 72.5 10 13 4.5e-11 2.8e-08 33.8 0.1 2 25 311 334 310 335 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF561-204 - 417 1.6e-65 214.8 72.5 11 13 2.4e-09 1.5e-06 28.4 1.2 3 25 340 362 339 363 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF561-204 - 417 1.6e-65 214.8 72.5 12 13 3e-11 1.9e-08 34.4 0.4 2 25 367 390 366 390 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF561-204 - 417 1.6e-65 214.8 72.5 13 13 2.1e-08 1.3e-05 25.4 0.4 2 18 395 411 394 412 0.94 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZNF561-204 - 417 1.2e-49 164.1 65.2 1 11 5.1e-05 0.031 14.7 3.0 2 21 50 69 49 70 0.93 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF561-204 - 417 1.2e-49 164.1 65.2 2 11 0.17 1e+02 3.6 0.0 6 20 105 119 105 121 0.91 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF561-204 - 417 1.2e-49 164.1 65.2 3 11 2.3e-06 0.0014 19.0 0.4 1 23 128 150 128 150 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF561-204 - 417 1.2e-49 164.1 65.2 4 11 0.011 6.5 7.4 0.2 5 16 188 199 186 201 0.89 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF561-204 - 417 1.2e-49 164.1 65.2 5 11 3.5e-08 2.1e-05 24.7 1.6 1 23 212 234 212 234 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF561-204 - 417 1.2e-49 164.1 65.2 6 11 1.4e-08 8.9e-06 25.9 3.2 1 23 240 262 240 262 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF561-204 - 417 1.2e-49 164.1 65.2 7 11 2.7e-07 0.00017 21.9 0.1 1 23 268 290 268 290 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF561-204 - 417 1.2e-49 164.1 65.2 8 11 1.1e-08 6.6e-06 26.3 0.6 1 23 296 318 296 318 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF561-204 - 417 1.2e-49 164.1 65.2 9 11 3.3e-06 0.0021 18.4 1.3 1 23 324 346 324 346 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF561-204 - 417 1.2e-49 164.1 65.2 10 11 1.3e-06 0.00079 19.7 0.6 1 23 352 374 352 374 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF561-204 - 417 1.2e-49 164.1 65.2 11 11 7.7e-07 0.00047 20.4 0.2 1 23 380 402 380 402 0.98 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZNF561-204 - 417 4.2e-36 120.5 63.3 1 11 0.0025 1.6 9.8 2.7 3 21 51 69 49 71 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF561-204 - 417 4.2e-36 120.5 63.3 2 11 0.67 4.1e+02 2.3 0.0 6 21 105 120 103 122 0.83 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF561-204 - 417 4.2e-36 120.5 63.3 3 11 1.6e-05 0.01 16.6 0.3 1 23 128 150 128 151 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF561-204 - 417 4.2e-36 120.5 63.3 4 11 0.16 1e+02 4.2 0.1 3 16 186 199 184 207 0.81 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF561-204 - 417 4.2e-36 120.5 63.3 5 11 6.1e-06 0.0037 18.0 1.4 1 23 212 234 212 235 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF561-204 - 417 4.2e-36 120.5 63.3 6 11 1.6e-06 0.001 19.7 2.1 1 23 240 262 240 263 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF561-204 - 417 4.2e-36 120.5 63.3 7 11 6.4e-06 0.004 17.9 0.1 1 23 268 290 268 291 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF561-204 - 417 4.2e-36 120.5 63.3 8 11 4.9e-06 0.003 18.2 0.4 1 23 296 318 296 319 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF561-204 - 417 4.2e-36 120.5 63.3 9 11 2.9e-05 0.018 15.8 1.1 1 23 324 346 324 347 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF561-204 - 417 4.2e-36 120.5 63.3 10 11 2.2e-06 0.0014 19.3 0.6 1 23 352 374 352 375 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF561-204 - 417 4.2e-36 120.5 63.3 11 11 1.9e-05 0.012 16.4 0.4 1 23 380 402 380 403 0.95 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF561-204 - 417 1.6e-14 53.4 76.0 1 12 0.17 1.1e+02 3.0 1.0 4 21 51 68 50 69 0.81 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF561-204 - 417 1.6e-14 53.4 76.0 2 12 4.6 2.8e+03 -1.5 0.1 7 11 105 109 105 110 0.91 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF561-204 - 417 1.6e-14 53.4 76.0 3 12 1e-05 0.0064 16.5 0.7 2 21 128 147 128 152 0.92 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF561-204 - 417 1.6e-14 53.4 76.0 4 12 1.1 6.8e+02 0.4 0.4 5 12 187 194 187 196 0.84 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF561-204 - 417 1.6e-14 53.4 76.0 5 12 0.00049 0.3 11.1 0.9 2 12 212 222 211 223 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF561-204 - 417 1.6e-14 53.4 76.0 6 12 1e-05 0.0063 16.5 1.6 2 24 240 262 240 265 0.96 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF561-204 - 417 1.6e-14 53.4 76.0 7 12 0.00079 0.49 10.5 0.8 2 25 268 291 268 293 0.91 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF561-204 - 417 1.6e-14 53.4 76.0 8 12 1.6e-06 0.001 19.0 0.6 2 24 296 318 296 321 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF561-204 - 417 1.6e-14 53.4 76.0 9 12 0.01 6.2 6.9 0.5 2 11 324 333 324 335 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF561-204 - 417 1.6e-14 53.4 76.0 10 12 3.5 2.2e+03 -1.2 0.4 19 25 341 347 340 349 0.83 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF561-204 - 417 1.6e-14 53.4 76.0 11 12 0.00029 0.18 11.8 0.3 2 24 352 374 352 377 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF561-204 - 417 1.6e-14 53.4 76.0 12 12 0.0049 3 7.9 0.7 2 11 380 389 380 390 0.92 C2H2-type zinc finger zf-C2H2_jaz PF12171.8 27 ZNF561-204 - 417 1.1e-09 38.3 45.2 1 9 9.2 5.7e+03 -2.2 1.3 4 22 51 69 50 69 0.82 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF561-204 - 417 1.1e-09 38.3 45.2 2 9 0.0052 3.2 8.1 0.3 2 21 128 147 127 147 0.86 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF561-204 - 417 1.1e-09 38.3 45.2 3 9 0.0025 1.5 9.2 0.9 2 21 212 231 211 232 0.89 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF561-204 - 417 1.1e-09 38.3 45.2 4 9 9.5e-05 0.059 13.7 0.2 2 24 240 262 239 262 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF561-204 - 417 1.1e-09 38.3 45.2 5 9 4.6 2.8e+03 -1.2 0.3 2 7 268 273 267 275 0.88 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF561-204 - 417 1.1e-09 38.3 45.2 6 9 0.0019 1.1 9.6 0.0 4 21 298 315 295 316 0.90 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF561-204 - 417 1.1e-09 38.3 45.2 7 9 7.4e-06 0.0046 17.2 0.2 2 24 324 346 323 347 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF561-204 - 417 1.1e-09 38.3 45.2 8 9 0.021 13 6.2 0.1 2 24 352 374 351 374 0.87 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF561-204 - 417 1.1e-09 38.3 45.2 9 9 0.082 51 4.3 0.0 2 21 380 399 379 400 0.77 Zinc-finger double-stranded RNA-binding zf-C2H2_11 PF16622.5 29 ZNF561-204 - 417 2.2e-09 36.9 48.0 1 11 0.036 22 4.9 1.6 5 26 49 70 48 71 0.93 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF561-204 - 417 2.2e-09 36.9 48.0 2 11 4.7 2.9e+03 -1.9 0.0 10 24 105 119 104 121 0.84 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF561-204 - 417 2.2e-09 36.9 48.0 3 11 0.0089 5.5 6.8 0.0 5 26 128 149 126 150 0.92 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF561-204 - 417 2.2e-09 36.9 48.0 4 11 8.7 5.4e+03 -2.7 0.2 9 15 188 194 185 196 0.86 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF561-204 - 417 2.2e-09 36.9 48.0 5 11 0.0017 1 9.2 1.0 4 26 211 233 209 234 0.91 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF561-204 - 417 2.2e-09 36.9 48.0 6 11 0.0066 4.1 7.3 0.5 5 24 240 259 239 262 0.89 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF561-204 - 417 2.2e-09 36.9 48.0 7 11 0.071 44 4.0 0.1 6 23 269 286 267 288 0.81 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF561-204 - 417 2.2e-09 36.9 48.0 8 11 3e-06 0.0019 17.9 0.3 5 26 296 317 294 318 0.95 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF561-204 - 417 2.2e-09 36.9 48.0 9 11 0.17 1e+02 2.7 0.1 6 14 325 333 322 344 0.75 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF561-204 - 417 2.2e-09 36.9 48.0 10 11 3.4 2.1e+03 -1.4 0.3 7 24 354 371 352 373 0.68 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF561-204 - 417 2.2e-09 36.9 48.0 11 11 0.00013 0.078 12.8 0.5 7 26 382 401 380 402 0.95 zinc-finger C2H2-type # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF561-204.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF561-204.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF561-204.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF561-204.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF561-204.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:08:59 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF561-205.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF561-205.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF561-205.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF561-205.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF561-205.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:09:00 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF561-206.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF561-206.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF561-206.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF561-206.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF561-206.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:09:00 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF561-207.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF561-207.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF561-207.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF561-207.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF561-207.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:09:00 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF561-208.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF561-208.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF561-208.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF561-208.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF561-208.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:09:01 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- KRAB PF01352.27 42 ZNF561-209 - 87 1e-23 82.7 1.4 1 1 8.2e-28 1.5e-23 82.2 1.4 1 41 13 53 13 57 0.98 KRAB box # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF561-209.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF561-209.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF561-209.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF561-209.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF561-209.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:09:01 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF561-210.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF561-210.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF561-210.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF561-210.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF561-210.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:09:01 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF561-211.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF561-211.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF561-211.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF561-211.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF561-211.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:09:02 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF561-212.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF561-212.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF561-212.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF561-212.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF561-212.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:09:02 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF561-213.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF561-213.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF561-213.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF561-213.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF561-213.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:09:02 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF561-214.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF561-214.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF561-214.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF561-214.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF561-214.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:09:03 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF561-215.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF561-215.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF561-215.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF561-215.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF561-215.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:09:03 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF561-216.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF561-216.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF561-216.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF561-216.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF561-216.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:09:03 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF561-217.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF561-217.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF561-217.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF561-217.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF561-217.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:09:04 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF561-218.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF561-218.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF561-218.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF561-218.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF561-218.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:09:04 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF561-219.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF561-219.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF561-219.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF561-219.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF561-219.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:09:04 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- KRAB PF01352.27 42 ZNF561-220 - 96 1.8e-23 81.9 0.4 1 1 1.5e-27 2.7e-23 81.3 0.4 1 42 40 81 40 81 0.97 KRAB box # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF561-220.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF561-220.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF561-220.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF561-220.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF561-220.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:09:05 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF561-221.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF561-221.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF561-221.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF561-221.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF561-221.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:09:05 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-C2H2 PF00096.26 23 ZNF562-201 - 354 2.4e-45 150.5 57.4 1 10 2.4e-05 0.016 15.6 0.5 3 21 55 73 54 74 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF562-201 - 354 2.4e-45 150.5 57.4 2 10 0.13 87 3.9 0.0 6 20 109 123 109 125 0.92 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF562-201 - 354 2.4e-45 150.5 57.4 3 10 1.7e-06 0.0011 19.2 0.4 1 23 132 154 132 154 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF562-201 - 354 2.4e-45 150.5 57.4 4 10 0.19 1.2e+02 3.4 0.1 3 17 160 176 159 177 0.89 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF562-201 - 354 2.4e-45 150.5 57.4 5 10 6.2e-06 0.0041 17.5 0.4 5 23 192 210 190 210 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF562-201 - 354 2.4e-45 150.5 57.4 6 10 5.8e-09 3.9e-06 27.0 0.6 1 23 216 238 216 238 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF562-201 - 354 2.4e-45 150.5 57.4 7 10 2.8e-08 1.9e-05 24.9 5.0 1 23 244 266 244 266 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF562-201 - 354 2.4e-45 150.5 57.4 8 10 3.8e-07 0.00025 21.3 0.1 1 23 272 294 272 294 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF562-201 - 354 2.4e-45 150.5 57.4 9 10 1.8e-09 1.2e-06 28.7 1.3 1 23 300 322 300 322 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF562-201 - 354 2.4e-45 150.5 57.4 10 10 3.3e-07 0.00022 21.5 2.7 1 23 328 350 328 350 0.99 Zinc finger, C2H2 type zf-H2C2_2 PF13465.6 26 ZNF562-201 - 354 1.8e-44 148.2 60.3 1 10 2.1 1.4e+03 -0.0 0.1 17 25 55 63 51 64 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF562-201 - 354 1.8e-44 148.2 60.3 2 10 7.1e-05 0.047 14.1 0.1 11 26 128 143 119 143 0.82 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF562-201 - 354 1.8e-44 148.2 60.3 3 10 0.015 10 6.8 0.0 2 17 147 165 146 168 0.74 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF562-201 - 354 1.8e-44 148.2 60.3 4 10 0.18 1.2e+02 3.4 1.7 7 26 180 199 172 199 0.80 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF562-201 - 354 1.8e-44 148.2 60.3 5 10 1.2e-08 8.1e-06 26.0 0.8 2 26 203 227 202 227 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF562-201 - 354 1.8e-44 148.2 60.3 6 10 1.9e-09 1.3e-06 28.6 0.8 2 26 231 255 230 255 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF562-201 - 354 1.8e-44 148.2 60.3 7 10 1.1e-10 7.5e-08 32.5 0.7 1 25 258 282 258 283 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF562-201 - 354 1.8e-44 148.2 60.3 8 10 2.9e-12 2e-09 37.5 0.2 4 25 289 310 286 311 0.90 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF562-201 - 354 1.8e-44 148.2 60.3 9 10 3e-11 2e-08 34.3 0.4 2 25 315 338 314 339 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF562-201 - 354 1.8e-44 148.2 60.3 10 10 0.42 2.8e+02 2.2 2.3 3 13 344 354 342 354 0.87 Zinc-finger double domain zf-C2H2_4 PF13894.6 24 ZNF562-201 - 354 3.8e-30 102.0 54.4 1 9 7.9e-05 0.052 14.4 0.6 3 22 55 74 53 76 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF562-201 - 354 3.8e-30 102.0 54.4 2 9 0.52 3.4e+02 2.5 0.0 6 21 109 124 107 126 0.83 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF562-201 - 354 3.8e-30 102.0 54.4 3 9 1.3e-05 0.0086 16.8 0.2 1 23 132 154 132 155 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF562-201 - 354 3.8e-30 102.0 54.4 4 9 9.9e-05 0.065 14.1 0.4 5 23 192 210 189 211 0.91 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF562-201 - 354 3.8e-30 102.0 54.4 5 9 3.3e-06 0.0022 18.7 0.6 1 23 216 238 216 239 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF562-201 - 354 3.8e-30 102.0 54.4 6 9 5.8e-06 0.0039 17.9 3.6 1 23 244 266 244 267 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF562-201 - 354 3.8e-30 102.0 54.4 7 9 1.9e-05 0.013 16.3 0.1 1 23 272 294 272 295 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF562-201 - 354 3.8e-30 102.0 54.4 8 9 5.5e-06 0.0037 18.0 0.8 1 23 300 322 300 323 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF562-201 - 354 3.8e-30 102.0 54.4 9 9 3.3e-05 0.022 15.6 2.3 1 23 328 350 328 351 0.94 C2H2-type zinc finger zf-C2H2_11 PF16622.5 29 ZNF562-201 - 354 2.6e-10 39.9 31.9 1 9 0.0035 2.3 8.0 0.4 7 25 55 73 54 74 0.96 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF562-201 - 354 2.6e-10 39.9 31.9 2 9 1.1 7.1e+02 0.1 0.0 10 26 109 125 107 126 0.90 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF562-201 - 354 2.6e-10 39.9 31.9 3 9 0.0068 4.5 7.1 0.0 5 26 132 153 130 154 0.92 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF562-201 - 354 2.6e-10 39.9 31.9 4 9 1.5 1e+03 -0.4 0.1 9 23 192 206 188 211 0.77 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF562-201 - 354 2.6e-10 39.9 31.9 5 9 0.0014 0.94 9.3 0.4 4 26 215 237 213 238 0.90 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF562-201 - 354 2.6e-10 39.9 31.9 6 9 0.00043 0.28 11.0 1.0 5 25 244 264 243 266 0.92 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF562-201 - 354 2.6e-10 39.9 31.9 7 9 0.056 37 4.2 0.0 6 18 273 285 271 292 0.76 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF562-201 - 354 2.6e-10 39.9 31.9 8 9 0.00018 0.12 12.2 0.2 5 26 300 321 297 322 0.94 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF562-201 - 354 2.6e-10 39.9 31.9 9 9 0.12 77 3.2 0.2 6 15 329 338 326 348 0.73 zinc-finger C2H2-type zf-C2H2_jaz PF12171.8 27 ZNF562-201 - 354 1e-09 38.4 43.7 1 8 4.5 3e+03 -1.3 1.2 4 22 55 73 55 73 0.87 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF562-201 - 354 1e-09 38.4 43.7 2 8 0.004 2.7 8.4 0.3 2 21 132 151 131 151 0.86 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF562-201 - 354 1e-09 38.4 43.7 3 8 0.94 6.3e+02 0.8 1.7 6 25 192 211 191 211 0.90 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF562-201 - 354 1e-09 38.4 43.7 4 8 1.9e-05 0.013 15.8 0.3 2 21 216 235 215 236 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF562-201 - 354 1e-09 38.4 43.7 5 8 0.00064 0.43 10.9 0.3 2 24 244 266 243 266 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF562-201 - 354 1e-09 38.4 43.7 6 8 3.6 2.4e+03 -1.0 0.3 2 7 272 277 271 278 0.87 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF562-201 - 354 1e-09 38.4 43.7 7 8 0.00016 0.11 12.8 0.1 4 21 302 319 299 320 0.91 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF562-201 - 354 1e-09 38.4 43.7 8 8 4e-06 0.0027 18.0 0.6 2 24 328 350 327 351 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_6 PF13912.6 27 ZNF562-201 - 354 9.1e-09 35.1 68.4 1 10 0.51 3.4e+02 1.4 0.8 4 22 55 73 54 74 0.81 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF562-201 - 354 9.1e-09 35.1 68.4 2 10 3.6 2.4e+03 -1.3 0.1 7 11 109 113 109 114 0.91 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF562-201 - 354 9.1e-09 35.1 68.4 3 10 1.2e-05 0.008 16.2 1.2 2 21 132 151 132 154 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF562-201 - 354 9.1e-09 35.1 68.4 4 10 0.027 18 5.5 1.0 7 26 193 212 191 213 0.92 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF562-201 - 354 9.1e-09 35.1 68.4 5 10 0.00038 0.25 11.4 0.9 2 12 216 226 215 227 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF562-201 - 354 9.1e-09 35.1 68.4 6 10 0.00027 0.18 11.9 3.9 2 24 244 266 244 268 0.95 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF562-201 - 354 9.1e-09 35.1 68.4 7 10 0.00013 0.089 12.8 0.2 2 24 272 294 272 297 0.92 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF562-201 - 354 9.1e-09 35.1 68.4 8 10 0.00015 0.1 12.6 0.8 2 24 300 322 300 325 0.89 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF562-201 - 354 9.1e-09 35.1 68.4 9 10 0.0078 5.2 7.2 0.5 2 11 328 337 328 339 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF562-201 - 354 9.1e-09 35.1 68.4 10 10 4.5 3e+03 -1.6 1.5 19 25 345 351 340 353 0.75 C2H2-type zinc finger Zn-ribbon_8 PF09723.10 40 ZNF562-201 - 354 5.1e-08 32.9 37.5 1 7 0.036 24 5.1 0.3 8 16 55 63 44 74 0.84 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF562-201 - 354 5.1e-08 32.9 37.5 2 7 0.0014 0.96 9.6 0.3 6 21 132 147 131 160 0.87 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF562-201 - 354 5.1e-08 32.9 37.5 3 7 0.36 2.4e+02 2.0 0.0 9 23 191 205 189 211 0.77 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF562-201 - 354 5.1e-08 32.9 37.5 4 7 5e-05 0.033 14.3 2.0 6 38 216 255 215 257 0.81 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF562-201 - 354 5.1e-08 32.9 37.5 5 7 0.00011 0.075 13.2 5.6 6 38 272 311 269 312 0.80 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF562-201 - 354 5.1e-08 32.9 37.5 6 7 0.00024 0.16 12.1 4.8 6 34 300 335 299 339 0.89 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF562-201 - 354 5.1e-08 32.9 37.5 7 7 0.025 17 5.6 0.5 6 15 328 337 327 346 0.88 Zinc ribbon domain # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF562-201.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF562-201.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF562-201.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF562-201.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF562-201.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:09:06 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-C2H2 PF00096.26 23 ZNF562-202 - 426 2e-44 147.6 57.4 1 10 2.8e-05 0.02 15.3 0.5 3 21 127 145 126 146 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF562-202 - 426 2e-44 147.6 57.4 2 10 0.15 1.1e+02 3.6 0.0 6 20 181 195 181 197 0.91 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF562-202 - 426 2e-44 147.6 57.4 3 10 2e-06 0.0014 18.9 0.4 1 23 204 226 204 226 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF562-202 - 426 2e-44 147.6 57.4 4 10 0.21 1.5e+02 3.1 0.1 3 17 232 248 231 249 0.89 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF562-202 - 426 2e-44 147.6 57.4 5 10 7.1e-06 0.0051 17.2 0.4 5 23 264 282 262 282 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF562-202 - 426 2e-44 147.6 57.4 6 10 6.8e-09 4.9e-06 26.7 0.6 1 23 288 310 288 310 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF562-202 - 426 2e-44 147.6 57.4 7 10 3.3e-08 2.4e-05 24.6 5.0 1 23 316 338 316 338 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF562-202 - 426 2e-44 147.6 57.4 8 10 4.5e-07 0.00032 21.0 0.1 1 23 344 366 344 366 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF562-202 - 426 2e-44 147.6 57.4 9 10 2.1e-09 1.5e-06 28.3 1.3 1 23 372 394 372 394 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF562-202 - 426 2e-44 147.6 57.4 10 10 3.8e-07 0.00028 21.2 2.7 1 23 400 422 400 422 0.99 Zinc finger, C2H2 type zf-H2C2_2 PF13465.6 26 ZNF562-202 - 426 4.8e-43 143.7 61.7 1 10 2.6 1.8e+03 -0.4 0.1 17 25 127 135 125 136 0.90 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF562-202 - 426 4.8e-43 143.7 61.7 2 10 8.2e-05 0.059 13.8 0.1 11 26 200 215 191 215 0.82 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF562-202 - 426 4.8e-43 143.7 61.7 3 10 0.018 13 6.5 0.0 2 17 219 237 218 240 0.74 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF562-202 - 426 4.8e-43 143.7 61.7 4 10 0.2 1.4e+02 3.1 1.7 7 26 252 271 244 271 0.80 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF562-202 - 426 4.8e-43 143.7 61.7 5 10 1.4e-08 1e-05 25.7 0.8 2 26 275 299 274 299 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF562-202 - 426 4.8e-43 143.7 61.7 6 10 2.2e-09 1.6e-06 28.3 0.8 2 26 303 327 302 327 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF562-202 - 426 4.8e-43 143.7 61.7 7 10 1.3e-10 9.4e-08 32.2 0.7 1 25 330 354 330 355 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF562-202 - 426 4.8e-43 143.7 61.7 8 10 3.4e-12 2.5e-09 37.2 0.2 4 25 361 382 358 383 0.90 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF562-202 - 426 4.8e-43 143.7 61.7 9 10 3.4e-11 2.5e-08 34.0 0.4 2 25 387 410 386 411 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF562-202 - 426 4.8e-43 143.7 61.7 10 10 0.49 3.5e+02 1.9 2.3 3 13 416 426 414 426 0.87 Zinc-finger double domain zf-C2H2_4 PF13894.6 24 ZNF562-202 - 426 5.6e-29 98.3 55.8 1 9 9.2e-05 0.066 14.1 0.6 3 22 127 146 125 148 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF562-202 - 426 5.6e-29 98.3 55.8 2 9 0.66 4.7e+02 2.1 0.0 6 21 181 196 179 197 0.82 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF562-202 - 426 5.6e-29 98.3 55.8 3 9 1.5e-05 0.011 16.5 0.2 1 23 204 226 204 227 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF562-202 - 426 5.6e-29 98.3 55.8 4 9 0.00011 0.082 13.8 0.4 5 23 264 282 261 283 0.91 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF562-202 - 426 5.6e-29 98.3 55.8 5 9 3.9e-06 0.0028 18.4 0.6 1 23 288 310 288 311 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF562-202 - 426 5.6e-29 98.3 55.8 6 9 6.8e-06 0.0049 17.6 3.6 1 23 316 338 316 339 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF562-202 - 426 5.6e-29 98.3 55.8 7 9 2.2e-05 0.016 16.0 0.1 1 23 344 366 344 367 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF562-202 - 426 5.6e-29 98.3 55.8 8 9 6.5e-06 0.0046 17.7 0.8 1 23 372 394 372 395 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF562-202 - 426 5.6e-29 98.3 55.8 9 9 3.9e-05 0.028 15.3 2.3 1 23 400 422 400 423 0.94 C2H2-type zinc finger KRAB PF01352.27 42 ZNF562-202 - 426 7.5e-24 83.1 1.1 1 1 2e-26 1.5e-23 82.2 1.1 1 42 40 81 40 81 0.98 KRAB box zf-C2H2_11 PF16622.5 29 ZNF562-202 - 426 3.5e-09 36.3 32.9 1 9 0.004 2.9 7.7 0.4 7 25 127 145 126 146 0.96 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF562-202 - 426 3.5e-09 36.3 32.9 2 9 1.4 9.9e+02 -0.4 0.0 10 26 181 197 180 198 0.90 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF562-202 - 426 3.5e-09 36.3 32.9 3 9 0.0079 5.6 6.8 0.0 5 26 204 225 202 226 0.92 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF562-202 - 426 3.5e-09 36.3 32.9 4 9 1.9 1.4e+03 -0.8 0.2 9 23 264 278 261 283 0.76 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF562-202 - 426 3.5e-09 36.3 32.9 5 9 0.0016 1.2 9.0 0.4 4 26 287 309 285 310 0.90 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF562-202 - 426 3.5e-09 36.3 32.9 6 9 0.0005 0.36 10.6 1.0 5 25 316 336 315 338 0.92 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF562-202 - 426 3.5e-09 36.3 32.9 7 9 0.064 46 3.9 0.0 6 18 345 357 343 364 0.76 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF562-202 - 426 3.5e-09 36.3 32.9 8 9 0.00021 0.15 11.8 0.2 5 26 372 393 369 394 0.94 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF562-202 - 426 3.5e-09 36.3 32.9 9 9 0.13 96 2.9 0.2 6 15 401 410 398 420 0.73 zinc-finger C2H2-type zf-C2H2_jaz PF12171.8 27 ZNF562-202 - 426 5.2e-09 36.2 43.7 1 8 5.2 3.7e+03 -1.6 1.2 4 22 127 145 127 145 0.87 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF562-202 - 426 5.2e-09 36.2 43.7 2 8 0.0046 3.3 8.1 0.3 2 21 204 223 203 223 0.86 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF562-202 - 426 5.2e-09 36.2 43.7 3 8 1.1 7.8e+02 0.5 1.7 6 25 264 283 263 283 0.90 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF562-202 - 426 5.2e-09 36.2 43.7 4 8 2.2e-05 0.016 15.5 0.3 2 21 288 307 287 308 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF562-202 - 426 5.2e-09 36.2 43.7 5 8 0.00075 0.54 10.6 0.3 2 24 316 338 315 338 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF562-202 - 426 5.2e-09 36.2 43.7 6 8 4 2.9e+03 -1.3 0.3 2 7 344 349 343 350 0.87 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF562-202 - 426 5.2e-09 36.2 43.7 7 8 0.00019 0.13 12.5 0.1 4 21 374 391 371 392 0.91 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF562-202 - 426 5.2e-09 36.2 43.7 8 8 4.7e-06 0.0034 17.6 0.6 2 24 400 422 399 423 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_6 PF13912.6 27 ZNF562-202 - 426 6.4e-08 32.4 68.4 1 10 0.58 4.2e+02 1.1 0.8 4 22 127 145 126 146 0.81 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF562-202 - 426 6.4e-08 32.4 68.4 2 10 4 2.9e+03 -1.6 0.1 7 11 181 185 181 186 0.91 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF562-202 - 426 6.4e-08 32.4 68.4 3 10 1.4e-05 0.01 15.9 1.2 2 21 204 223 204 226 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF562-202 - 426 6.4e-08 32.4 68.4 4 10 0.032 23 5.1 1.0 7 26 265 284 263 285 0.92 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF562-202 - 426 6.4e-08 32.4 68.4 5 10 0.00043 0.31 11.1 0.9 2 12 288 298 287 299 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF562-202 - 426 6.4e-08 32.4 68.4 6 10 0.00031 0.22 11.5 3.9 2 24 316 338 316 340 0.95 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF562-202 - 426 6.4e-08 32.4 68.4 7 10 0.00016 0.11 12.5 0.2 2 24 344 366 344 369 0.92 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF562-202 - 426 6.4e-08 32.4 68.4 8 10 0.00018 0.13 12.3 0.8 2 24 372 394 372 397 0.89 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF562-202 - 426 6.4e-08 32.4 68.4 9 10 0.0089 6.4 6.9 0.5 2 11 400 409 400 411 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF562-202 - 426 6.4e-08 32.4 68.4 10 10 5.2 3.7e+03 -1.9 1.5 19 25 417 423 412 425 0.75 C2H2-type zinc finger Zn-ribbon_8 PF09723.10 40 ZNF562-202 - 426 1.7e-07 31.2 37.3 1 7 0.042 30 4.8 0.3 8 16 127 135 116 146 0.84 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF562-202 - 426 1.7e-07 31.2 37.3 2 7 0.0017 1.2 9.3 0.3 6 21 204 219 203 232 0.87 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF562-202 - 426 1.7e-07 31.2 37.3 3 7 0.41 3e+02 1.7 0.0 9 23 263 277 261 283 0.77 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF562-202 - 426 1.7e-07 31.2 37.3 4 7 5.5e-05 0.04 14.0 1.9 6 38 288 327 287 329 0.81 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF562-202 - 426 1.7e-07 31.2 37.3 5 7 0.00013 0.091 12.9 5.5 6 38 344 383 341 384 0.80 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF562-202 - 426 1.7e-07 31.2 37.3 6 7 0.00024 0.17 12.0 4.6 6 34 372 407 371 411 0.89 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF562-202 - 426 1.7e-07 31.2 37.3 7 7 0.029 21 5.3 0.5 6 15 400 409 399 418 0.88 Zinc ribbon domain # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF562-202.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF562-202.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF562-202.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF562-202.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF562-202.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:09:06 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF562-203.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF562-203.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF562-203.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF562-203.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF562-203.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:09:06 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-C2H2 PF00096.26 23 ZNF562-204 - 310 5e-46 152.7 57.4 1 10 2.1e-05 0.014 15.9 0.5 3 21 11 29 10 30 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF562-204 - 310 5e-46 152.7 57.4 2 10 0.12 74 4.1 0.0 6 20 65 79 65 81 0.92 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF562-204 - 310 5e-46 152.7 57.4 3 10 1.5e-06 0.00096 19.5 0.4 1 23 88 110 88 110 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF562-204 - 310 5e-46 152.7 57.4 4 10 0.16 1.1e+02 3.6 0.1 3 17 116 132 115 133 0.89 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF562-204 - 310 5e-46 152.7 57.4 5 10 5.4e-06 0.0035 17.7 0.4 5 23 148 166 146 166 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF562-204 - 310 5e-46 152.7 57.4 6 10 5.1e-09 3.3e-06 27.3 0.6 1 23 172 194 172 194 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF562-204 - 310 5e-46 152.7 57.4 7 10 2.5e-08 1.6e-05 25.1 5.0 1 23 200 222 200 222 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF562-204 - 310 5e-46 152.7 57.4 8 10 3.4e-07 0.00021 21.5 0.1 1 23 228 250 228 250 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF562-204 - 310 5e-46 152.7 57.4 9 10 1.6e-09 1e-06 28.9 1.3 1 23 256 278 256 278 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF562-204 - 310 5e-46 152.7 57.4 10 10 2.9e-07 0.00019 21.7 2.7 1 23 284 306 284 306 0.99 Zinc finger, C2H2 type zf-H2C2_2 PF13465.6 26 ZNF562-204 - 310 4.7e-45 150.1 60.7 1 10 2 1.3e+03 0.1 0.1 17 25 11 19 10 20 0.89 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF562-204 - 310 4.7e-45 150.1 60.7 2 10 6.2e-05 0.04 14.4 0.1 11 26 84 99 75 99 0.82 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF562-204 - 310 4.7e-45 150.1 60.7 3 10 0.013 8.5 7.0 0.0 2 17 103 121 102 124 0.74 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF562-204 - 310 4.7e-45 150.1 60.7 4 10 0.16 1e+02 3.6 1.8 7 26 136 155 128 155 0.80 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF562-204 - 310 4.7e-45 150.1 60.7 5 10 1.1e-08 6.8e-06 26.3 0.8 2 26 159 183 158 183 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF562-204 - 310 4.7e-45 150.1 60.7 6 10 1.6e-09 1.1e-06 28.8 0.8 2 26 187 211 186 211 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF562-204 - 310 4.7e-45 150.1 60.7 7 10 9.8e-11 6.3e-08 32.7 0.7 1 25 214 238 214 239 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF562-204 - 310 4.7e-45 150.1 60.7 8 10 2.6e-12 1.6e-09 37.7 0.2 3 25 244 266 242 267 0.90 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF562-204 - 310 4.7e-45 150.1 60.7 9 10 2.6e-11 1.7e-08 34.5 0.4 2 25 271 294 270 295 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF562-204 - 310 4.7e-45 150.1 60.7 10 10 0.38 2.4e+02 2.4 2.3 3 13 300 310 298 310 0.87 Zinc-finger double domain zf-C2H2_4 PF13894.6 24 ZNF562-204 - 310 8.3e-31 104.0 54.4 1 9 6.9e-05 0.044 14.6 0.6 3 22 11 30 9 32 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF562-204 - 310 8.3e-31 104.0 54.4 2 9 0.46 2.9e+02 2.7 0.0 6 21 65 80 63 82 0.83 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF562-204 - 310 8.3e-31 104.0 54.4 3 9 1.1e-05 0.0072 17.1 0.2 1 23 88 110 88 111 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF562-204 - 310 8.3e-31 104.0 54.4 4 9 8.6e-05 0.055 14.3 0.4 5 23 148 166 145 167 0.91 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF562-204 - 310 8.3e-31 104.0 54.4 5 9 2.9e-06 0.0019 18.9 0.6 1 23 172 194 172 195 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF562-204 - 310 8.3e-31 104.0 54.4 6 9 5.1e-06 0.0033 18.2 3.6 1 23 200 222 200 223 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF562-204 - 310 8.3e-31 104.0 54.4 7 9 1.7e-05 0.011 16.5 0.1 1 23 228 250 228 251 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF562-204 - 310 8.3e-31 104.0 54.4 8 9 4.8e-06 0.0031 18.2 0.8 1 23 256 278 256 279 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF562-204 - 310 8.3e-31 104.0 54.4 9 9 2.9e-05 0.018 15.8 2.3 1 23 284 306 284 307 0.94 C2H2-type zinc finger zf-C2H2_11 PF16622.5 29 ZNF562-204 - 310 7e-11 41.7 31.9 1 9 0.0031 2 8.3 0.4 7 25 11 29 10 30 0.96 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF562-204 - 310 7e-11 41.7 31.9 2 9 0.94 6.1e+02 0.3 0.0 10 26 65 81 63 82 0.90 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF562-204 - 310 7e-11 41.7 31.9 3 9 0.006 3.8 7.3 0.0 5 26 88 109 86 110 0.92 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF562-204 - 310 7e-11 41.7 31.9 4 9 1.4 8.8e+02 -0.2 0.1 9 23 148 162 144 167 0.77 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF562-204 - 310 7e-11 41.7 31.9 5 9 0.0012 0.8 9.5 0.4 4 26 171 193 169 194 0.90 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF562-204 - 310 7e-11 41.7 31.9 6 9 0.00038 0.24 11.2 1.0 5 25 200 220 199 222 0.92 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF562-204 - 310 7e-11 41.7 31.9 7 9 0.049 32 4.4 0.0 6 18 229 241 227 248 0.76 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF562-204 - 310 7e-11 41.7 31.9 8 9 0.00016 0.1 12.4 0.2 5 26 256 277 253 278 0.94 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF562-204 - 310 7e-11 41.7 31.9 9 9 0.1 66 3.4 0.2 6 15 285 294 282 304 0.73 zinc-finger C2H2-type zf-C2H2_jaz PF12171.8 27 ZNF562-204 - 310 3.2e-10 40.0 43.7 1 8 4 2.5e+03 -1.1 1.2 4 22 11 29 11 29 0.87 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF562-204 - 310 3.2e-10 40.0 43.7 2 8 0.0035 2.3 8.6 0.3 2 21 88 107 87 107 0.86 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF562-204 - 310 3.2e-10 40.0 43.7 3 8 0.83 5.3e+02 1.1 1.7 6 25 148 167 147 167 0.90 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF562-204 - 310 3.2e-10 40.0 43.7 4 8 1.7e-05 0.011 16.0 0.3 2 21 172 191 171 192 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF562-204 - 310 3.2e-10 40.0 43.7 5 8 0.00056 0.36 11.2 0.3 2 24 200 222 199 222 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF562-204 - 310 3.2e-10 40.0 43.7 6 8 3.2 2e+03 -0.8 0.3 2 7 228 233 227 234 0.87 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF562-204 - 310 3.2e-10 40.0 43.7 7 8 0.00014 0.091 13.1 0.1 4 21 258 275 255 276 0.91 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF562-204 - 310 3.2e-10 40.0 43.7 8 8 3.5e-06 0.0023 18.2 0.6 2 24 284 306 283 307 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_6 PF13912.6 27 ZNF562-204 - 310 2.1e-09 37.2 68.4 1 10 0.45 2.9e+02 1.6 0.8 4 22 11 29 10 30 0.81 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF562-204 - 310 2.1e-09 37.2 68.4 2 10 3.2 2e+03 -1.1 0.1 7 11 65 69 65 70 0.91 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF562-204 - 310 2.1e-09 37.2 68.4 3 10 1.1e-05 0.0068 16.4 1.2 2 21 88 107 88 110 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF562-204 - 310 2.1e-09 37.2 68.4 4 10 0.024 15 5.7 1.0 7 26 149 168 147 169 0.92 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF562-204 - 310 2.1e-09 37.2 68.4 5 10 0.00034 0.21 11.6 0.9 2 12 172 182 171 183 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF562-204 - 310 2.1e-09 37.2 68.4 6 10 0.00024 0.15 12.1 3.9 2 24 200 222 200 224 0.95 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF562-204 - 310 2.1e-09 37.2 68.4 7 10 0.00012 0.075 13.1 0.2 2 24 228 250 228 253 0.92 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF562-204 - 310 2.1e-09 37.2 68.4 8 10 0.00013 0.086 12.9 0.8 2 24 256 278 256 281 0.89 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF562-204 - 310 2.1e-09 37.2 68.4 9 10 0.007 4.5 7.4 0.5 2 11 284 293 284 295 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF562-204 - 310 2.1e-09 37.2 68.4 10 10 4 2.6e+03 -1.4 1.5 19 25 301 307 296 309 0.75 C2H2-type zinc finger Zn-ribbon_8 PF09723.10 40 ZNF562-204 - 310 2.3e-08 34.0 37.7 1 8 0.042 27 5.0 0.4 8 16 11 19 5 30 0.87 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF562-204 - 310 2.3e-08 34.0 37.7 2 8 9.9 6.3e+03 -2.6 0.0 11 16 65 70 63 73 0.82 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF562-204 - 310 2.3e-08 34.0 37.7 3 8 0.0013 0.82 9.8 0.3 6 21 88 103 87 117 0.86 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF562-204 - 310 2.3e-08 34.0 37.7 4 8 0.32 2e+02 2.2 0.0 9 23 147 161 145 167 0.77 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF562-204 - 310 2.3e-08 34.0 37.7 5 8 5.4e-05 0.034 14.2 2.4 6 38 172 211 171 213 0.81 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF562-204 - 310 2.3e-08 34.0 37.7 6 8 8.5e-05 0.054 13.6 5.4 6 38 228 267 225 268 0.80 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF562-204 - 310 2.3e-08 34.0 37.7 7 8 0.00021 0.14 12.3 4.8 6 34 256 291 255 294 0.89 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF562-204 - 310 2.3e-08 34.0 37.7 8 8 0.022 14 5.9 0.5 6 15 284 293 283 303 0.87 Zinc ribbon domain XPA_N PF01286.18 32 ZNF562-204 - 310 5e-07 29.7 36.2 1 9 0.32 2e+02 2.1 1.5 3 18 10 25 9 27 0.82 XPA protein N-terminal XPA_N PF01286.18 32 ZNF562-204 - 310 5e-07 29.7 36.2 2 9 0.01 6.6 6.9 0.2 3 12 89 98 87 99 0.89 XPA protein N-terminal XPA_N PF01286.18 32 ZNF562-204 - 310 5e-07 29.7 36.2 3 9 5.6 3.6e+03 -1.9 0.0 5 14 119 128 119 132 0.83 XPA protein N-terminal XPA_N PF01286.18 32 ZNF562-204 - 310 5e-07 29.7 36.2 4 9 3.9 2.5e+03 -1.4 0.0 6 12 148 154 147 161 0.81 XPA protein N-terminal XPA_N PF01286.18 32 ZNF562-204 - 310 5e-07 29.7 36.2 5 9 0.0092 5.9 7.0 0.5 3 14 173 184 172 189 0.91 XPA protein N-terminal XPA_N PF01286.18 32 ZNF562-204 - 310 5e-07 29.7 36.2 6 9 0.0011 0.69 10.0 0.1 3 14 201 212 199 217 0.85 XPA protein N-terminal XPA_N PF01286.18 32 ZNF562-204 - 310 5e-07 29.7 36.2 7 9 0.013 8.4 6.5 0.3 3 12 229 238 227 239 0.88 XPA protein N-terminal XPA_N PF01286.18 32 ZNF562-204 - 310 5e-07 29.7 36.2 8 9 0.0029 1.8 8.6 0.1 3 14 257 268 255 273 0.88 XPA protein N-terminal XPA_N PF01286.18 32 ZNF562-204 - 310 5e-07 29.7 36.2 9 9 0.0018 1.1 9.3 0.1 3 14 285 296 283 300 0.91 XPA protein N-terminal # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF562-204.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF562-204.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF562-204.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF562-204.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF562-204.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:09:07 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- KRAB PF01352.27 42 ZNF562-205 - 91 2.2e-24 84.8 1.3 1 1 1.9e-28 3.3e-24 84.2 1.3 1 41 40 80 40 80 0.98 KRAB box # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF562-205.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF562-205.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF562-205.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF562-205.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF562-205.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:09:07 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF562-206.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF562-206.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF562-206.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF562-206.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF562-206.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:09:07 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF562-207.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF562-207.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF562-207.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF562-207.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF562-207.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:09:08 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-C2H2 PF00096.26 23 ZNF562-208 - 425 1.9e-44 147.7 57.4 1 10 2.9e-05 0.02 15.3 0.5 3 21 126 144 125 145 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF562-208 - 425 1.9e-44 147.7 57.4 2 10 0.16 1.1e+02 3.6 0.0 6 20 180 194 180 196 0.91 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF562-208 - 425 1.9e-44 147.7 57.4 3 10 2.1e-06 0.0014 18.9 0.4 1 23 203 225 203 225 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF562-208 - 425 1.9e-44 147.7 57.4 4 10 0.22 1.5e+02 3.1 0.1 3 17 231 247 230 248 0.89 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF562-208 - 425 1.9e-44 147.7 57.4 5 10 7.4e-06 0.0051 17.2 0.4 5 23 263 281 261 281 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF562-208 - 425 1.9e-44 147.7 57.4 6 10 7.1e-09 4.9e-06 26.7 0.6 1 23 287 309 287 309 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF562-208 - 425 1.9e-44 147.7 57.4 7 10 3.4e-08 2.3e-05 24.6 5.0 1 23 315 337 315 337 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF562-208 - 425 1.9e-44 147.7 57.4 8 10 4.6e-07 0.00032 21.0 0.1 1 23 343 365 343 365 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF562-208 - 425 1.9e-44 147.7 57.4 9 10 2.1e-09 1.5e-06 28.3 1.3 1 23 371 393 371 393 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF562-208 - 425 1.9e-44 147.7 57.4 10 10 4e-07 0.00028 21.2 2.7 1 23 399 421 399 421 0.99 Zinc finger, C2H2 type zf-H2C2_2 PF13465.6 26 ZNF562-208 - 425 5e-43 143.7 61.7 1 10 2.7 1.8e+03 -0.4 0.1 17 25 126 134 124 135 0.90 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF562-208 - 425 5e-43 143.7 61.7 2 10 8.5e-05 0.059 13.8 0.1 11 26 199 214 190 214 0.82 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF562-208 - 425 5e-43 143.7 61.7 3 10 0.018 13 6.5 0.0 2 17 218 236 217 239 0.74 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF562-208 - 425 5e-43 143.7 61.7 4 10 0.21 1.5e+02 3.1 1.7 7 26 251 270 243 270 0.80 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF562-208 - 425 5e-43 143.7 61.7 5 10 1.5e-08 1e-05 25.7 0.8 2 26 274 298 273 298 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF562-208 - 425 5e-43 143.7 61.7 6 10 2.3e-09 1.6e-06 28.3 0.8 2 26 302 326 301 326 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF562-208 - 425 5e-43 143.7 61.7 7 10 1.4e-10 9.4e-08 32.2 0.7 1 25 329 353 329 354 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF562-208 - 425 5e-43 143.7 61.7 8 10 3.6e-12 2.5e-09 37.2 0.2 4 25 360 381 357 382 0.90 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF562-208 - 425 5e-43 143.7 61.7 9 10 3.6e-11 2.5e-08 34.0 0.4 2 25 386 409 385 410 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF562-208 - 425 5e-43 143.7 61.7 10 10 0.5 3.5e+02 1.9 2.3 3 13 415 425 413 425 0.87 Zinc-finger double domain zf-C2H2_4 PF13894.6 24 ZNF562-208 - 425 5.4e-29 98.4 55.8 1 9 9.5e-05 0.066 14.1 0.6 3 22 126 145 124 147 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF562-208 - 425 5.4e-29 98.4 55.8 2 9 0.68 4.7e+02 2.1 0.0 6 21 180 195 178 196 0.82 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF562-208 - 425 5.4e-29 98.4 55.8 3 9 1.6e-05 0.011 16.5 0.2 1 23 203 225 203 226 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF562-208 - 425 5.4e-29 98.4 55.8 4 9 0.00012 0.082 13.8 0.4 5 23 263 281 260 282 0.91 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF562-208 - 425 5.4e-29 98.4 55.8 5 9 4e-06 0.0028 18.4 0.6 1 23 287 309 287 310 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF562-208 - 425 5.4e-29 98.4 55.8 6 9 7e-06 0.0049 17.6 3.6 1 23 315 337 315 338 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF562-208 - 425 5.4e-29 98.4 55.8 7 9 2.3e-05 0.016 16.0 0.1 1 23 343 365 343 366 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF562-208 - 425 5.4e-29 98.4 55.8 8 9 6.7e-06 0.0046 17.7 0.8 1 23 371 393 371 394 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF562-208 - 425 5.4e-29 98.4 55.8 9 9 4e-05 0.028 15.3 2.3 1 23 399 421 399 422 0.94 C2H2-type zinc finger KRAB PF01352.27 42 ZNF562-208 - 425 7.5e-24 83.1 1.1 1 1 2.1e-26 1.4e-23 82.2 1.1 1 42 40 81 40 81 0.98 KRAB box zf-C2H2_11 PF16622.5 29 ZNF562-208 - 425 3.4e-09 36.3 32.9 1 9 0.0042 2.9 7.7 0.4 7 25 126 144 125 145 0.96 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF562-208 - 425 3.4e-09 36.3 32.9 2 9 1.4 9.9e+02 -0.4 0.0 10 26 180 196 179 197 0.90 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF562-208 - 425 3.4e-09 36.3 32.9 3 9 0.0082 5.6 6.8 0.0 5 26 203 224 201 225 0.92 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF562-208 - 425 3.4e-09 36.3 32.9 4 9 2 1.4e+03 -0.8 0.2 9 23 263 277 260 282 0.76 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF562-208 - 425 3.4e-09 36.3 32.9 5 9 0.0017 1.2 9.0 0.4 4 26 286 308 284 309 0.90 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF562-208 - 425 3.4e-09 36.3 32.9 6 9 0.00051 0.35 10.6 1.0 5 25 315 335 314 337 0.92 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF562-208 - 425 3.4e-09 36.3 32.9 7 9 0.067 46 3.9 0.0 6 18 344 356 342 363 0.76 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF562-208 - 425 3.4e-09 36.3 32.9 8 9 0.00022 0.15 11.8 0.2 5 26 371 392 368 393 0.94 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF562-208 - 425 3.4e-09 36.3 32.9 9 9 0.14 96 2.9 0.2 6 15 400 409 397 419 0.73 zinc-finger C2H2-type zf-C2H2_jaz PF12171.8 27 ZNF562-208 - 425 5.1e-09 36.2 43.7 1 8 5.4 3.7e+03 -1.6 1.2 4 22 126 144 126 144 0.87 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF562-208 - 425 5.1e-09 36.2 43.7 2 8 0.0048 3.3 8.1 0.3 2 21 203 222 202 222 0.86 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF562-208 - 425 5.1e-09 36.2 43.7 3 8 1.1 7.8e+02 0.5 1.7 6 25 263 282 262 282 0.90 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF562-208 - 425 5.1e-09 36.2 43.7 4 8 2.3e-05 0.016 15.5 0.3 2 21 287 306 286 307 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF562-208 - 425 5.1e-09 36.2 43.7 5 8 0.00078 0.53 10.6 0.3 2 24 315 337 314 337 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF562-208 - 425 5.1e-09 36.2 43.7 6 8 4.2 2.9e+03 -1.3 0.3 2 7 343 348 342 349 0.87 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF562-208 - 425 5.1e-09 36.2 43.7 7 8 0.00019 0.13 12.5 0.1 4 21 373 390 370 391 0.91 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF562-208 - 425 5.1e-09 36.2 43.7 8 8 4.9e-06 0.0033 17.6 0.6 2 24 399 421 398 422 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_6 PF13912.6 27 ZNF562-208 - 425 6.3e-08 32.4 68.4 1 10 0.6 4.2e+02 1.1 0.8 4 22 126 144 125 145 0.81 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF562-208 - 425 6.3e-08 32.4 68.4 2 10 4.2 2.9e+03 -1.6 0.1 7 11 180 184 180 185 0.91 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF562-208 - 425 6.3e-08 32.4 68.4 3 10 1.4e-05 0.0099 15.9 1.2 2 21 203 222 203 225 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF562-208 - 425 6.3e-08 32.4 68.4 4 10 0.033 23 5.2 1.0 7 26 264 283 262 284 0.92 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF562-208 - 425 6.3e-08 32.4 68.4 5 10 0.00045 0.31 11.1 0.9 2 12 287 297 286 298 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF562-208 - 425 6.3e-08 32.4 68.4 6 10 0.00032 0.22 11.6 3.9 2 24 315 337 315 339 0.95 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF562-208 - 425 6.3e-08 32.4 68.4 7 10 0.00016 0.11 12.5 0.2 2 24 343 365 343 368 0.92 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF562-208 - 425 6.3e-08 32.4 68.4 8 10 0.00018 0.13 12.3 0.8 2 24 371 393 371 396 0.89 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF562-208 - 425 6.3e-08 32.4 68.4 9 10 0.0093 6.4 6.9 0.5 2 11 399 408 399 410 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF562-208 - 425 6.3e-08 32.4 68.4 10 10 5.3 3.7e+03 -1.9 1.5 19 25 416 422 411 424 0.75 C2H2-type zinc finger Zn-ribbon_8 PF09723.10 40 ZNF562-208 - 425 2.6e-07 30.6 37.7 1 7 0.056 39 4.5 0.4 8 16 126 134 120 145 0.87 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF562-208 - 425 2.6e-07 30.6 37.7 2 7 0.0017 1.2 9.3 0.3 6 21 203 218 202 231 0.87 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF562-208 - 425 2.6e-07 30.6 37.7 3 7 0.43 3e+02 1.7 0.0 9 23 262 276 260 282 0.77 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF562-208 - 425 2.6e-07 30.6 37.7 4 7 5.7e-05 0.04 14.1 1.9 6 38 287 326 286 328 0.81 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF562-208 - 425 2.6e-07 30.6 37.7 5 7 0.00013 0.091 12.9 5.5 6 38 343 382 340 383 0.80 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF562-208 - 425 2.6e-07 30.6 37.7 6 7 0.00025 0.17 12.0 4.6 6 34 371 406 370 410 0.89 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF562-208 - 425 2.6e-07 30.6 37.7 7 7 0.03 21 5.3 0.5 6 15 399 408 398 417 0.88 Zinc ribbon domain # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF562-208.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF562-208.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF562-208.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF562-208.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF562-208.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:09:08 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZNF563-201 - 476 9.1e-77 250.3 104.0 1 13 0.26 2e+02 2.7 0.4 1 16 117 132 117 142 0.84 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF563-201 - 476 9.1e-77 250.3 104.0 2 13 1.5e-07 0.00011 22.4 2.9 8 26 161 180 149 180 0.76 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF563-201 - 476 9.1e-77 250.3 104.0 3 13 2e-08 1.5e-05 25.2 0.1 1 24 183 206 183 207 0.98 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF563-201 - 476 9.1e-77 250.3 104.0 4 13 4.3e-11 3.3e-08 33.6 1.7 2 24 212 234 212 235 0.97 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF563-201 - 476 9.1e-77 250.3 104.0 5 13 7.3e-11 5.7e-08 32.8 1.9 1 23 239 261 239 262 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF563-201 - 476 9.1e-77 250.3 104.0 6 13 1.5e-11 1.2e-08 35.0 1.4 2 25 268 291 267 291 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF563-201 - 476 9.1e-77 250.3 104.0 7 13 1.6e-08 1.3e-05 25.4 5.2 1 26 295 320 295 320 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF563-201 - 476 9.1e-77 250.3 104.0 8 13 6.7e-09 5.2e-06 26.6 1.6 3 25 325 347 323 348 0.90 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF563-201 - 476 9.1e-77 250.3 104.0 9 13 3.2e-10 2.5e-07 30.8 2.5 3 23 353 373 352 376 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF563-201 - 476 9.1e-77 250.3 104.0 10 13 1e-09 8.1e-07 29.2 0.6 2 25 380 403 379 404 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF563-201 - 476 9.1e-77 250.3 104.0 11 13 2.2e-08 1.7e-05 25.0 4.6 3 23 409 429 408 432 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF563-201 - 476 9.1e-77 250.3 104.0 12 13 7.3e-08 5.7e-05 23.4 0.3 2 25 436 459 435 460 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF563-201 - 476 9.1e-77 250.3 104.0 13 13 7.2 5.6e+03 -1.9 0.2 3 9 465 471 464 472 0.91 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZNF563-201 - 476 3e-43 143.9 103.6 1 13 7 5.5e+03 -1.8 0.1 5 11 79 85 78 85 0.85 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF563-201 - 476 3e-43 143.9 103.6 2 13 2.2 1.8e+03 -0.2 0.1 14 22 116 124 102 128 0.69 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF563-201 - 476 3e-43 143.9 103.6 3 13 8.3e-09 6.4e-06 26.3 0.4 1 20 169 188 169 190 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF563-201 - 476 3e-43 143.9 103.6 4 13 5.4e-06 0.0042 17.5 0.8 1 23 197 219 197 219 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF563-201 - 476 3e-43 143.9 103.6 5 13 3.6e-06 0.0028 18.0 2.9 1 23 225 247 225 247 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF563-201 - 476 3e-43 143.9 103.6 6 13 2.1e-06 0.0017 18.7 0.6 1 23 253 275 253 275 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF563-201 - 476 3e-43 143.9 103.6 7 13 7.1e-08 5.5e-05 23.4 1.3 1 23 281 303 281 303 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF563-201 - 476 3e-43 143.9 103.6 8 13 3.5e-06 0.0027 18.1 5.1 1 23 309 331 309 331 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF563-201 - 476 3e-43 143.9 103.6 9 13 1.1e-06 0.00088 19.6 1.1 1 23 337 359 337 359 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF563-201 - 476 3e-43 143.9 103.6 10 13 4.5e-07 0.00035 20.9 3.6 1 23 365 387 365 387 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF563-201 - 476 3e-43 143.9 103.6 11 13 0.00055 0.43 11.1 3.6 1 23 393 415 393 415 0.95 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF563-201 - 476 3e-43 143.9 103.6 12 13 1e-06 0.00079 19.7 2.6 1 23 421 443 421 443 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF563-201 - 476 3e-43 143.9 103.6 13 13 0.0004 0.31 11.6 1.9 2 23 450 471 450 471 0.97 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZNF563-201 - 476 2.2e-34 115.2 99.8 1 12 4.4 3.4e+03 -0.6 0.0 5 11 79 85 78 89 0.83 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF563-201 - 476 2.2e-34 115.2 99.8 2 12 1.5e-07 0.00012 22.6 0.3 1 21 169 189 169 191 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF563-201 - 476 2.2e-34 115.2 99.8 3 12 0.00018 0.14 13.1 1.0 1 23 197 219 197 220 0.91 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF563-201 - 476 2.2e-34 115.2 99.8 4 12 1.8e-05 0.014 16.2 2.3 1 23 225 247 225 248 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF563-201 - 476 2.2e-34 115.2 99.8 5 12 2.9e-05 0.023 15.5 0.6 1 23 253 275 253 276 0.97 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF563-201 - 476 2.2e-34 115.2 99.8 6 12 1.2e-06 0.00092 19.9 1.2 1 23 281 303 281 304 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF563-201 - 476 2.2e-34 115.2 99.8 7 12 1.3e-05 0.01 16.6 3.9 1 23 309 331 309 332 0.97 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF563-201 - 476 2.2e-34 115.2 99.8 8 12 4.5e-05 0.035 14.9 0.8 1 23 337 359 337 360 0.87 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF563-201 - 476 2.2e-34 115.2 99.8 9 12 8.5e-06 0.0066 17.2 2.5 1 23 365 387 365 388 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF563-201 - 476 2.2e-34 115.2 99.8 10 12 0.00031 0.24 12.3 3.9 1 23 393 415 393 416 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF563-201 - 476 2.2e-34 115.2 99.8 11 12 4.1e-05 0.032 15.1 2.3 1 23 421 443 421 444 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF563-201 - 476 2.2e-34 115.2 99.8 12 12 0.00024 0.18 12.7 1.9 2 23 450 471 449 472 0.94 C2H2-type zinc finger KRAB PF01352.27 42 ZNF563-201 - 476 7.9e-21 73.4 0.0 1 1 1.9e-23 1.5e-20 72.6 0.0 2 42 4 44 3 44 0.96 KRAB box zf-C2H2_jaz PF12171.8 27 ZNF563-201 - 476 1.1e-17 63.8 49.6 1 11 8.1e-06 0.0063 16.8 0.0 2 21 169 188 168 189 0.95 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF563-201 - 476 1.1e-17 63.8 49.6 2 11 0.0066 5.1 7.5 0.1 2 24 197 219 196 219 0.89 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF563-201 - 476 1.1e-17 63.8 49.6 3 11 0.17 1.3e+02 3.0 0.6 2 11 225 234 224 245 0.78 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF563-201 - 476 1.1e-17 63.8 49.6 4 11 0.0017 1.3 9.4 0.2 2 24 253 275 252 275 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF563-201 - 476 1.1e-17 63.8 49.6 5 11 0.0019 1.5 9.2 0.2 2 24 281 303 280 304 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF563-201 - 476 1.1e-17 63.8 49.6 6 11 0.0015 1.2 9.5 0.7 2 22 309 329 308 329 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF563-201 - 476 1.1e-17 63.8 49.6 7 11 0.0038 2.9 8.3 0.0 2 22 337 357 336 357 0.87 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF563-201 - 476 1.1e-17 63.8 49.6 8 11 0.0013 1 9.7 0.1 2 21 365 384 364 385 0.95 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF563-201 - 476 1.1e-17 63.8 49.6 9 11 0.007 5.5 7.4 2.0 2 24 393 415 392 416 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF563-201 - 476 1.1e-17 63.8 49.6 10 11 0.0095 7.4 7.0 0.1 2 21 421 440 420 441 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF563-201 - 476 1.1e-17 63.8 49.6 11 11 0.04 31 5.0 0.9 3 24 450 471 448 472 0.91 Zinc-finger double-stranded RNA-binding zf-C2H2_6 PF13912.6 27 ZNF563-201 - 476 2.3e-14 53.0 91.1 1 12 1.9 1.5e+03 -0.6 0.1 5 12 78 85 78 85 0.88 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF563-201 - 476 2.3e-14 53.0 91.1 2 12 1.6e-07 0.00013 21.9 0.2 1 21 168 188 168 189 0.95 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF563-201 - 476 2.3e-14 53.0 91.1 3 12 0.093 73 3.5 4.0 2 11 197 206 197 222 0.84 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF563-201 - 476 2.3e-14 53.0 91.1 4 12 0.00045 0.35 10.9 1.3 2 14 225 237 225 248 0.82 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF563-201 - 476 2.3e-14 53.0 91.1 5 12 0.006 4.7 7.3 0.2 2 11 253 262 253 264 0.88 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF563-201 - 476 2.3e-14 53.0 91.1 6 12 0.00034 0.26 11.3 1.6 2 26 281 305 281 306 0.92 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF563-201 - 476 2.3e-14 53.0 91.1 7 12 0.00047 0.37 10.8 5.0 2 24 309 331 309 333 0.92 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF563-201 - 476 2.3e-14 53.0 91.1 8 12 0.0023 1.8 8.7 0.4 2 11 337 346 337 348 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF563-201 - 476 2.3e-14 53.0 91.1 9 12 0.0027 2.1 8.5 0.7 2 12 365 375 365 387 0.82 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF563-201 - 476 2.3e-14 53.0 91.1 10 12 0.0025 1.9 8.6 2.3 2 13 393 404 393 416 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF563-201 - 476 2.3e-14 53.0 91.1 11 12 0.0097 7.5 6.7 0.4 2 10 421 429 421 434 0.90 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF563-201 - 476 2.3e-14 53.0 91.1 12 12 0.031 25 5.0 3.8 3 13 450 460 450 474 0.72 C2H2-type zinc finger Zn-ribbon_8 PF09723.10 40 ZNF563-201 - 476 3.3e-10 39.9 53.6 1 10 0.25 1.9e+02 2.3 0.7 10 31 79 99 77 112 0.67 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF563-201 - 476 3.3e-10 39.9 53.6 2 10 0.00071 0.55 10.4 0.2 6 19 169 182 168 191 0.83 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF563-201 - 476 3.3e-10 39.9 53.6 3 10 0.0012 0.93 9.7 2.2 6 33 197 231 196 234 0.80 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF563-201 - 476 3.3e-10 39.9 53.6 4 10 0.03 23 5.2 5.9 6 34 225 260 223 263 0.86 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF563-201 - 476 3.3e-10 39.9 53.6 5 10 0.0024 1.9 8.7 0.1 6 22 281 297 280 304 0.79 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF563-201 - 476 3.3e-10 39.9 53.6 6 10 3.5e-05 0.027 14.6 2.1 6 34 309 344 308 349 0.72 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF563-201 - 476 3.3e-10 39.9 53.6 7 10 0.00084 0.65 10.2 2.1 7 36 338 374 324 376 0.83 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF563-201 - 476 3.3e-10 39.9 53.6 8 10 0.00079 0.61 10.2 0.9 6 34 365 400 363 404 0.76 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF563-201 - 476 3.3e-10 39.9 53.6 9 10 0.0088 6.9 6.9 3.7 7 36 394 430 393 432 0.78 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF563-201 - 476 3.3e-10 39.9 53.6 10 10 0.00047 0.37 10.9 1.0 6 34 421 456 420 459 0.77 Zinc ribbon domain C1_1 PF00130.22 53 ZNF563-201 - 476 9.4e-09 35.0 42.8 1 8 0.0073 5.7 6.9 2.4 1 36 154 204 154 207 0.80 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF563-201 - 476 9.4e-09 35.0 42.8 2 8 0.0036 2.8 7.9 1.1 9 36 194 232 187 235 0.82 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF563-201 - 476 9.4e-09 35.0 42.8 3 8 0.0047 3.6 7.5 0.7 9 35 222 259 214 262 0.81 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF563-201 - 476 9.4e-09 35.0 42.8 4 8 0.0038 2.9 7.8 0.7 9 36 250 288 243 290 0.80 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF563-201 - 476 9.4e-09 35.0 42.8 5 8 1.8e-05 0.014 15.3 0.7 8 40 277 320 268 321 0.87 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF563-201 - 476 9.4e-09 35.0 42.8 6 8 0.0011 0.84 9.6 1.8 4 37 329 373 327 378 0.81 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF563-201 - 476 9.4e-09 35.0 42.8 7 8 0.0027 2.1 8.3 3.1 1 36 383 428 383 437 0.83 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF563-201 - 476 9.4e-09 35.0 42.8 8 8 0.0091 7.1 6.6 0.2 5 22 442 464 435 473 0.70 Phorbol esters/diacylglycerol binding domain (C1 domain) Zn_ribbon_SprT PF17283.2 38 ZNF563-201 - 476 8.6e-08 32.0 50.3 1 5 0.0029 2.2 8.2 3.3 5 31 169 203 156 207 0.94 SprT-like zinc ribbon domain Zn_ribbon_SprT PF17283.2 38 ZNF563-201 - 476 8.6e-08 32.0 50.3 2 5 0.0085 6.6 6.7 4.0 5 30 225 258 224 262 0.95 SprT-like zinc ribbon domain Zn_ribbon_SprT PF17283.2 38 ZNF563-201 - 476 8.6e-08 32.0 50.3 3 5 0.0022 1.7 8.6 9.2 5 34 281 318 280 348 0.91 SprT-like zinc ribbon domain Zn_ribbon_SprT PF17283.2 38 ZNF563-201 - 476 8.6e-08 32.0 50.3 4 5 7.3e-05 0.057 13.3 3.9 5 33 365 401 364 434 0.93 SprT-like zinc ribbon domain Zn_ribbon_SprT PF17283.2 38 ZNF563-201 - 476 8.6e-08 32.0 50.3 5 5 0.0018 1.4 8.9 1.1 5 32 421 456 420 462 0.89 SprT-like zinc ribbon domain # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF563-201.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF563-201.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF563-201.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF563-201.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF563-201.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:09:09 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF563-202.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF563-202.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF563-202.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF563-202.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF563-202.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:09:09 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- KRAB PF01352.27 42 ZNF563-203 - 229 2.2e-21 75.2 0.0 1 2 3.4e-24 5.1e-21 74.0 0.0 2 42 4 44 3 44 0.96 KRAB box KRAB PF01352.27 42 ZNF563-203 - 229 2.2e-21 75.2 0.0 2 2 6.2 9.3e+03 -3.6 0.0 16 29 174 187 172 189 0.67 KRAB box # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF563-203.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF563-203.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF563-203.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF563-203.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF563-203.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:09:09 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF563-204.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF563-204.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF563-204.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF563-204.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF563-204.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:09:10 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZNF564-201 - 553 1.4e-121 392.0 111.8 1 17 6.5 4.8e+03 -1.7 0.0 16 25 76 85 63 86 0.57 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF564-201 - 553 1.4e-121 392.0 111.8 2 17 0.024 18 6.0 0.4 14 24 102 112 94 114 0.84 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF564-201 - 553 1.4e-121 392.0 111.8 3 17 2.4e-07 0.00018 21.8 8.8 1 26 117 152 117 152 0.85 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF564-201 - 553 1.4e-121 392.0 111.8 4 17 1e-12 7.5e-10 38.8 0.7 2 25 156 179 155 180 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF564-201 - 553 1.4e-121 392.0 111.8 5 17 6.6e-11 4.9e-08 33.0 0.2 2 25 184 207 183 208 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF564-201 - 553 1.4e-121 392.0 111.8 6 17 1.7e-10 1.3e-07 31.7 0.5 5 25 215 235 212 236 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF564-201 - 553 1.4e-121 392.0 111.8 7 17 2e-10 1.5e-07 31.5 0.2 2 25 240 263 239 264 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF564-201 - 553 1.4e-121 392.0 111.8 8 17 4e-10 3e-07 30.6 2.0 4 25 270 291 268 292 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF564-201 - 553 1.4e-121 392.0 111.8 9 17 5e-09 3.7e-06 27.1 0.1 1 24 295 318 295 319 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF564-201 - 553 1.4e-121 392.0 111.8 10 17 2.2e-11 1.6e-08 34.6 3.0 3 26 325 348 323 348 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF564-201 - 553 1.4e-121 392.0 111.8 11 17 1.4e-11 1.1e-08 35.1 0.7 1 25 351 375 351 376 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF564-201 - 553 1.4e-121 392.0 111.8 12 17 6.6e-10 4.9e-07 29.9 0.5 2 25 380 403 379 404 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF564-201 - 553 1.4e-121 392.0 111.8 13 17 8.9e-11 6.6e-08 32.6 0.3 3 25 409 431 407 432 0.90 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF564-201 - 553 1.4e-121 392.0 111.8 14 17 1.9e-09 1.4e-06 28.5 0.4 3 25 437 459 436 460 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF564-201 - 553 1.4e-121 392.0 111.8 15 17 2.1e-11 1.6e-08 34.6 1.7 3 25 465 487 463 488 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF564-201 - 553 1.4e-121 392.0 111.8 16 17 6e-11 4.5e-08 33.2 1.4 5 25 495 515 491 516 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF564-201 - 553 1.4e-121 392.0 111.8 17 17 0.0081 6.1 7.5 0.0 2 15 520 533 519 552 0.79 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZNF564-201 - 553 1.1e-71 233.5 114.6 1 16 3.2 2.4e+03 -0.7 0.0 5 13 79 87 78 91 0.77 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF564-201 - 553 1.1e-71 233.5 114.6 2 16 9.4e-06 0.007 16.8 6.6 2 23 104 125 103 125 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF564-201 - 553 1.1e-71 233.5 114.6 3 16 1.1e-06 0.00082 19.7 5.4 1 23 141 163 141 163 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF564-201 - 553 1.1e-71 233.5 114.6 4 16 1e-06 0.00076 19.8 0.1 1 23 169 191 169 191 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF564-201 - 553 1.1e-71 233.5 114.6 5 16 1.8e-08 1.4e-05 25.3 0.4 1 23 197 219 197 219 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF564-201 - 553 1.1e-71 233.5 114.6 6 16 8.2e-06 0.0061 16.9 0.2 1 23 225 247 225 247 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF564-201 - 553 1.1e-71 233.5 114.6 7 16 1.8e-08 1.4e-05 25.3 0.6 1 23 253 275 253 275 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF564-201 - 553 1.1e-71 233.5 114.6 8 16 1.4e-06 0.001 19.4 2.2 1 23 281 303 281 303 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF564-201 - 553 1.1e-71 233.5 114.6 9 16 3.6e-07 0.00027 21.2 1.1 1 23 309 331 309 331 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF564-201 - 553 1.1e-71 233.5 114.6 10 16 2.1e-08 1.5e-05 25.1 1.8 1 23 337 359 337 359 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF564-201 - 553 1.1e-71 233.5 114.6 11 16 6.7e-07 0.0005 20.4 0.2 1 23 365 387 365 387 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF564-201 - 553 1.1e-71 233.5 114.6 12 16 2.2e-05 0.017 15.6 1.6 1 23 393 415 393 415 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF564-201 - 553 1.1e-71 233.5 114.6 13 16 1.2e-05 0.0089 16.4 0.2 1 23 421 443 421 443 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF564-201 - 553 1.1e-71 233.5 114.6 14 16 3.7e-05 0.027 14.9 1.8 1 23 449 471 449 471 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF564-201 - 553 1.1e-71 233.5 114.6 15 16 4.5e-07 0.00033 20.9 0.3 1 23 477 499 477 499 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF564-201 - 553 1.1e-71 233.5 114.6 16 16 1.1e-07 8.1e-05 22.9 2.1 1 23 505 527 505 527 0.97 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZNF564-201 - 553 1.3e-60 196.8 112.3 1 16 2 1.5e+03 0.5 0.0 9 21 55 68 53 69 0.81 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF564-201 - 553 1.3e-60 196.8 112.3 2 16 0.00011 0.084 13.8 5.8 2 23 104 125 103 126 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF564-201 - 553 1.3e-60 196.8 112.3 3 16 2e-07 0.00015 22.3 4.7 1 23 141 163 141 164 0.97 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF564-201 - 553 1.3e-60 196.8 112.3 4 16 1.4e-06 0.0011 19.7 0.1 1 23 169 191 169 192 0.97 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF564-201 - 553 1.3e-60 196.8 112.3 5 16 3.4e-05 0.025 15.4 0.4 1 23 197 219 197 220 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF564-201 - 553 1.3e-60 196.8 112.3 6 16 2.7e-05 0.02 15.7 0.3 1 23 225 247 225 248 0.97 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF564-201 - 553 1.3e-60 196.8 112.3 7 16 2.4e-05 0.018 15.9 0.5 1 23 253 275 253 276 0.91 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF564-201 - 553 1.3e-60 196.8 112.3 8 16 1.2e-05 0.0089 16.8 1.7 1 23 281 303 281 304 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF564-201 - 553 1.3e-60 196.8 112.3 9 16 5.6e-05 0.042 14.7 0.9 1 23 309 331 309 332 0.97 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF564-201 - 553 1.3e-60 196.8 112.3 10 16 9e-07 0.00068 20.3 1.1 1 23 337 359 337 360 0.97 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF564-201 - 553 1.3e-60 196.8 112.3 11 16 2.8e-06 0.0021 18.7 0.3 1 23 365 387 365 388 0.97 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF564-201 - 553 1.3e-60 196.8 112.3 12 16 5.8e-06 0.0044 17.8 1.6 1 23 393 415 393 416 0.97 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF564-201 - 553 1.3e-60 196.8 112.3 13 16 6.1e-06 0.0046 17.7 0.2 1 23 421 443 421 444 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF564-201 - 553 1.3e-60 196.8 112.3 14 16 2.6e-06 0.002 18.8 1.8 1 23 449 471 449 472 0.97 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF564-201 - 553 1.3e-60 196.8 112.3 15 16 6.3e-05 0.047 14.5 0.2 1 23 477 499 477 500 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF564-201 - 553 1.3e-60 196.8 112.3 16 16 3.4e-07 0.00026 21.6 1.6 1 23 505 527 505 528 0.96 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF564-201 - 553 1.1e-34 117.8 98.8 1 16 3.4 2.5e+03 -1.4 0.0 5 13 78 86 78 91 0.78 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF564-201 - 553 1.1e-34 117.8 98.8 2 16 0.013 9.9 6.3 1.2 3 13 104 114 104 127 0.71 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF564-201 - 553 1.1e-34 117.8 98.8 3 16 1.3e-05 0.0095 15.9 5.6 2 24 141 163 141 166 0.95 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF564-201 - 553 1.1e-34 117.8 98.8 4 16 0.00019 0.14 12.2 0.0 2 24 169 191 169 193 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF564-201 - 553 1.1e-34 117.8 98.8 5 16 0.0022 1.6 8.8 0.4 2 11 197 206 197 208 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF564-201 - 553 1.1e-34 117.8 98.8 6 16 0.00071 0.53 10.3 0.1 2 24 225 247 225 249 0.92 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF564-201 - 553 1.1e-34 117.8 98.8 7 16 0.0022 1.6 8.8 0.4 2 11 253 262 253 264 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF564-201 - 553 1.1e-34 117.8 98.8 8 16 7.6e-06 0.0057 16.6 1.8 2 24 281 303 281 305 0.97 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF564-201 - 553 1.1e-34 117.8 98.8 9 16 0.0083 6.2 6.9 0.4 2 11 309 318 309 324 0.92 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF564-201 - 553 1.1e-34 117.8 98.8 10 16 9.6e-06 0.0072 16.3 1.5 2 24 337 359 337 362 0.95 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF564-201 - 553 1.1e-34 117.8 98.8 11 16 1.2e-05 0.0089 16.0 0.1 2 24 365 387 365 389 0.95 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF564-201 - 553 1.1e-34 117.8 98.8 12 16 0.0089 6.7 6.8 0.2 2 11 393 402 393 403 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF564-201 - 553 1.1e-34 117.8 98.8 13 16 6.4e-06 0.0047 16.9 0.2 2 24 421 443 421 444 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF564-201 - 553 1.1e-34 117.8 98.8 14 16 0.0027 2.1 8.5 1.1 2 11 449 458 449 473 0.83 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF564-201 - 553 1.1e-34 117.8 98.8 15 16 4.4e-05 0.033 14.2 0.4 2 24 477 499 477 502 0.88 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF564-201 - 553 1.1e-34 117.8 98.8 16 16 0.00024 0.18 11.9 1.8 2 13 505 516 505 527 0.90 C2H2-type zinc finger zf-C2H2_jaz PF12171.8 27 ZNF564-201 - 553 3.5e-27 94.1 71.7 1 15 0.0014 1.1 9.6 1.7 4 24 105 125 104 129 0.91 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF564-201 - 553 3.5e-27 94.1 71.7 2 15 0.00075 0.56 10.6 2.7 2 24 141 163 140 163 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF564-201 - 553 3.5e-27 94.1 71.7 3 15 0.078 59 4.1 0.0 2 13 169 180 168 188 0.85 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF564-201 - 553 3.5e-27 94.1 71.7 4 15 0.00019 0.14 12.5 0.1 2 24 197 219 196 219 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF564-201 - 553 3.5e-27 94.1 71.7 5 15 0.00043 0.32 11.3 0.1 2 21 225 244 224 245 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF564-201 - 553 3.5e-27 94.1 71.7 6 15 0.0003 0.23 11.8 0.1 2 24 253 275 252 281 0.88 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF564-201 - 553 3.5e-27 94.1 71.7 7 15 0.006 4.5 7.7 1.1 2 21 281 300 280 301 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF564-201 - 553 3.5e-27 94.1 71.7 8 15 0.02 15 6.0 0.1 2 24 309 331 308 331 0.89 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF564-201 - 553 3.5e-27 94.1 71.7 9 15 0.00045 0.34 11.3 0.5 2 24 337 359 336 359 0.91 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF564-201 - 553 3.5e-27 94.1 71.7 10 15 0.015 11 6.4 0.0 2 13 365 376 364 384 0.86 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF564-201 - 553 3.5e-27 94.1 71.7 11 15 0.005 3.7 7.9 0.3 2 24 393 415 392 415 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF564-201 - 553 3.5e-27 94.1 71.7 12 15 0.0021 1.6 9.1 0.0 2 21 421 440 420 441 0.88 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF564-201 - 553 3.5e-27 94.1 71.7 13 15 0.0059 4.4 7.7 0.2 2 24 449 471 448 471 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF564-201 - 553 3.5e-27 94.1 71.7 14 15 0.0053 3.9 7.9 0.2 2 24 477 499 476 499 0.91 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF564-201 - 553 3.5e-27 94.1 71.7 15 15 0.00018 0.14 12.5 0.3 2 22 505 525 504 525 0.94 Zinc-finger double-stranded RNA-binding KRAB PF01352.27 42 ZNF564-201 - 553 3.8e-21 74.4 0.1 1 1 7.9e-24 5.9e-21 73.8 0.1 1 42 3 44 3 44 0.97 KRAB box Zn_ribbon_SprT PF17283.2 38 ZNF564-201 - 553 6.3e-19 67.6 51.5 1 11 4.8e-05 0.036 14.0 0.0 7 32 105 148 104 152 0.94 SprT-like zinc ribbon domain Zn_ribbon_SprT PF17283.2 38 ZNF564-201 - 553 6.3e-19 67.6 51.5 2 11 1.4e-05 0.01 15.7 0.7 5 31 169 203 168 206 0.95 SprT-like zinc ribbon domain Zn_ribbon_SprT PF17283.2 38 ZNF564-201 - 553 6.3e-19 67.6 51.5 3 11 0.0004 0.3 11.0 0.2 5 32 197 232 196 237 0.92 SprT-like zinc ribbon domain Zn_ribbon_SprT PF17283.2 38 ZNF564-201 - 553 6.3e-19 67.6 51.5 4 11 2.8e-05 0.021 14.7 0.9 5 34 253 291 252 295 0.89 SprT-like zinc ribbon domain Zn_ribbon_SprT PF17283.2 38 ZNF564-201 - 553 6.3e-19 67.6 51.5 5 11 0.0056 4.2 7.4 2.8 5 35 309 347 308 350 0.92 SprT-like zinc ribbon domain Zn_ribbon_SprT PF17283.2 38 ZNF564-201 - 553 6.3e-19 67.6 51.5 6 11 0.0087 6.5 6.7 0.8 5 32 337 372 336 377 0.90 SprT-like zinc ribbon domain Zn_ribbon_SprT PF17283.2 38 ZNF564-201 - 553 6.3e-19 67.6 51.5 7 11 0.00031 0.23 11.4 0.9 5 31 365 399 364 403 0.94 SprT-like zinc ribbon domain Zn_ribbon_SprT PF17283.2 38 ZNF564-201 - 553 6.3e-19 67.6 51.5 8 11 0.00021 0.16 11.9 1.2 5 33 393 429 392 435 0.90 SprT-like zinc ribbon domain Zn_ribbon_SprT PF17283.2 38 ZNF564-201 - 553 6.3e-19 67.6 51.5 9 11 0.00072 0.54 10.2 4.9 5 34 449 486 448 490 0.93 SprT-like zinc ribbon domain Zn_ribbon_SprT PF17283.2 38 ZNF564-201 - 553 6.3e-19 67.6 51.5 10 11 3.9e-06 0.0029 17.5 2.3 5 36 477 516 476 518 0.94 SprT-like zinc ribbon domain Zn_ribbon_SprT PF17283.2 38 ZNF564-201 - 553 6.3e-19 67.6 51.5 11 11 0.0022 1.7 8.6 0.3 5 23 505 523 504 525 0.95 SprT-like zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF564-201 - 553 1.4e-13 50.7 92.3 1 13 8.4 6.2e+03 -2.6 0.0 10 18 79 87 78 96 0.77 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF564-201 - 553 1.4e-13 50.7 92.3 2 13 0.41 3.1e+02 1.6 0.4 7 19 104 116 102 122 0.80 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF564-201 - 553 1.4e-13 50.7 92.3 3 13 5.5e-06 0.0041 17.2 5.7 6 34 141 176 131 179 0.82 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF564-201 - 553 1.4e-13 50.7 92.3 4 13 0.00062 0.47 10.6 5.9 6 34 197 232 196 236 0.78 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF564-201 - 553 1.4e-13 50.7 92.3 5 13 0.1 76 3.5 0.7 6 16 225 235 223 243 0.83 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF564-201 - 553 1.4e-13 50.7 92.3 6 13 5.4e-06 0.0041 17.2 2.8 6 34 253 288 252 291 0.81 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF564-201 - 553 1.4e-13 50.7 92.3 7 13 0.081 61 3.9 0.2 6 15 309 318 308 330 0.91 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF564-201 - 553 1.4e-13 50.7 92.3 8 13 0.00041 0.3 11.2 5.9 6 34 337 372 336 377 0.78 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF564-201 - 553 1.4e-13 50.7 92.3 9 13 0.012 8.7 6.6 0.6 6 16 365 375 363 385 0.84 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF564-201 - 553 1.4e-13 50.7 92.3 10 13 0.0017 1.2 9.3 5.3 6 34 393 428 392 436 0.82 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF564-201 - 553 1.4e-13 50.7 92.3 11 13 0.0017 1.3 9.2 7.0 6 34 449 484 448 487 0.79 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF564-201 - 553 1.4e-13 50.7 92.3 12 13 0.0003 0.23 11.6 6.1 6 34 477 512 476 515 0.80 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF564-201 - 553 1.4e-13 50.7 92.3 13 13 0.0028 2.1 8.5 1.1 6 20 505 519 504 527 0.75 Zinc ribbon domain zf-C2H2_11 PF16622.5 29 ZNF564-201 - 553 2.5e-13 49.5 76.5 1 16 5.1 3.8e+03 -2.2 0.0 9 21 79 91 79 91 0.80 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF564-201 - 553 2.5e-13 49.5 76.5 2 16 0.0094 7 6.5 6.6 5 25 103 123 102 129 0.93 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF564-201 - 553 2.5e-13 49.5 76.5 3 16 4.8e-05 0.036 13.8 1.9 5 23 141 159 138 162 0.93 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF564-201 - 553 2.5e-13 49.5 76.5 4 16 0.00018 0.14 12.0 0.0 7 25 171 189 168 191 0.93 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF564-201 - 553 2.5e-13 49.5 76.5 5 16 0.1 77 3.2 0.1 5 14 197 206 194 207 0.85 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF564-201 - 553 2.5e-13 49.5 76.5 6 16 0.0021 1.5 8.6 0.1 6 25 226 245 223 247 0.93 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF564-201 - 553 2.5e-13 49.5 76.5 7 16 0.093 69 3.3 0.1 5 14 253 262 250 266 0.87 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF564-201 - 553 2.5e-13 49.5 76.5 8 16 0.17 1.3e+02 2.5 0.1 5 19 281 295 278 301 0.74 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF564-201 - 553 2.5e-13 49.5 76.5 9 16 0.32 2.4e+02 1.6 0.1 5 14 309 318 307 327 0.86 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF564-201 - 553 2.5e-13 49.5 76.5 10 16 0.013 10 6.0 0.1 6 19 338 351 335 357 0.81 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF564-201 - 553 2.5e-13 49.5 76.5 11 16 6.8e-05 0.051 13.3 0.1 6 25 366 385 363 387 0.93 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF564-201 - 553 2.5e-13 49.5 76.5 12 16 0.11 79 3.1 0.3 5 14 393 402 390 412 0.83 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF564-201 - 553 2.5e-13 49.5 76.5 13 16 0.06 45 3.9 0.3 6 25 422 441 419 443 0.87 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF564-201 - 553 2.5e-13 49.5 76.5 14 16 0.32 2.4e+02 1.6 0.2 5 21 449 465 446 469 0.76 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF564-201 - 553 2.5e-13 49.5 76.5 15 16 0.21 1.6e+02 2.2 0.0 6 17 478 491 475 496 0.68 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF564-201 - 553 2.5e-13 49.5 76.5 16 16 0.0016 1.2 9.0 0.4 6 23 506 523 503 526 0.92 zinc-finger C2H2-type zf-met PF12874.7 25 ZNF564-201 - 553 4e-08 33.4 83.0 1 15 0.00013 0.1 13.1 1.9 3 23 105 125 104 126 0.95 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF564-201 - 553 4e-08 33.4 83.0 2 15 2.9 2.2e+03 -0.7 3.2 1 21 141 161 141 164 0.89 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF564-201 - 553 4e-08 33.4 83.0 3 15 0.5 3.7e+02 1.7 0.0 1 20 169 188 169 189 0.90 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF564-201 - 553 4e-08 33.4 83.0 4 15 0.097 72 4.0 0.1 1 21 197 217 197 220 0.91 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF564-201 - 553 4e-08 33.4 83.0 5 15 0.14 1e+02 3.5 0.1 1 20 225 244 225 245 0.95 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF564-201 - 553 4e-08 33.4 83.0 6 15 0.15 1.1e+02 3.4 0.1 1 21 253 273 253 276 0.91 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF564-201 - 553 4e-08 33.4 83.0 7 15 1 7.8e+02 0.7 0.9 3 20 283 300 281 301 0.89 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF564-201 - 553 4e-08 33.4 83.0 8 15 0.0023 1.7 9.1 0.2 1 21 309 329 309 332 0.91 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF564-201 - 553 4e-08 33.4 83.0 9 15 0.0042 3.1 8.3 1.2 1 21 337 357 337 360 0.89 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF564-201 - 553 4e-08 33.4 83.0 10 15 0.074 56 4.3 0.0 1 20 365 384 365 385 0.93 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF564-201 - 553 4e-08 33.4 83.0 11 15 0.0019 1.4 9.4 0.8 1 21 393 413 393 416 0.92 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF564-201 - 553 4e-08 33.4 83.0 12 15 0.063 47 4.6 0.1 1 14 421 434 421 440 0.78 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF564-201 - 553 4e-08 33.4 83.0 13 15 0.0032 2.4 8.7 0.7 1 21 449 469 449 472 0.92 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF564-201 - 553 4e-08 33.4 83.0 14 15 0.022 16 6.0 0.4 1 21 477 497 477 500 0.91 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF564-201 - 553 4e-08 33.4 83.0 15 15 0.012 9.2 6.8 1.6 1 21 505 525 505 527 0.92 Zinc-finger of C2H2 type zf-trcl PF13451.6 48 ZNF564-201 - 553 2.8e-07 30.3 61.7 1 15 6.1 4.6e+03 -2.4 0.5 5 15 103 113 101 116 0.79 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF564-201 - 553 2.8e-07 30.3 61.7 2 15 0.018 13 5.7 0.5 3 14 139 150 137 162 0.91 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF564-201 - 553 2.8e-07 30.3 61.7 3 15 0.11 79 3.3 0.0 3 15 167 179 165 180 0.89 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF564-201 - 553 2.8e-07 30.3 61.7 4 15 0.6 4.5e+02 0.8 4.0 2 14 194 206 193 230 0.73 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF564-201 - 553 2.8e-07 30.3 61.7 5 15 0.2 1.5e+02 2.4 0.3 3 15 223 235 221 243 0.88 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF564-201 - 553 2.8e-07 30.3 61.7 6 15 0.068 51 3.9 0.2 2 14 250 262 249 264 0.87 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF564-201 - 553 2.8e-07 30.3 61.7 7 15 0.018 13 5.8 0.2 3 15 279 291 277 299 0.79 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF564-201 - 553 2.8e-07 30.3 61.7 8 15 0.00087 0.65 9.9 0.0 2 17 306 321 305 326 0.90 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF564-201 - 553 2.8e-07 30.3 61.7 9 15 0.13 94 3.0 0.1 3 14 335 346 333 350 0.88 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF564-201 - 553 2.8e-07 30.3 61.7 10 15 0.017 13 5.8 0.1 3 15 363 375 361 376 0.90 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF564-201 - 553 2.8e-07 30.3 61.7 11 15 0.23 1.8e+02 2.2 0.4 2 14 390 402 389 405 0.89 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF564-201 - 553 2.8e-07 30.3 61.7 12 15 0.092 69 3.5 0.0 3 15 419 431 417 433 0.90 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF564-201 - 553 2.8e-07 30.3 61.7 13 15 0.19 1.4e+02 2.5 0.1 2 14 446 458 445 459 0.87 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF564-201 - 553 2.8e-07 30.3 61.7 14 15 0.016 12 5.9 0.1 3 16 475 488 473 491 0.85 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF564-201 - 553 2.8e-07 30.3 61.7 15 15 0.0016 1.2 9.1 0.2 3 22 503 522 501 525 0.87 Probable zinc-ribbon domain # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF564-201.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF564-201.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF564-201.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF564-201.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF564-201.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:09:10 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF564-202.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF564-202.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF564-202.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF564-202.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF564-202.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:09:11 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF564-203.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF564-203.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF564-203.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF564-203.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF564-203.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:09:11 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF564-204.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF564-204.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF564-204.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF564-204.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF564-204.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:09:11 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF564-205.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF564-205.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF564-205.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF564-205.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF564-205.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:09:12 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZNF565-201 - 499 3.6e-91 295.9 76.3 1 13 0.00057 0.45 11.0 1.0 9 25 161 177 148 178 0.75 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF565-201 - 499 3.6e-91 295.9 76.3 2 13 2.3e-09 1.8e-06 28.1 0.9 1 25 181 205 181 206 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF565-201 - 499 3.6e-91 295.9 76.3 3 13 3.7e-11 2.9e-08 33.8 0.5 1 25 209 233 209 234 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF565-201 - 499 3.6e-91 295.9 76.3 4 13 2.3e-10 1.8e-07 31.3 0.4 4 25 240 261 237 262 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF565-201 - 499 3.6e-91 295.9 76.3 5 13 2.9e-10 2.2e-07 31.0 0.2 4 24 268 288 265 290 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF565-201 - 499 3.6e-91 295.9 76.3 6 13 1.2e-09 9.5e-07 29.0 0.3 2 25 294 317 293 318 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF565-201 - 499 3.6e-91 295.9 76.3 7 13 4.8e-11 3.7e-08 33.4 0.8 2 26 322 346 321 346 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF565-201 - 499 3.6e-91 295.9 76.3 8 13 3.4e-11 2.6e-08 33.9 0.7 3 25 351 373 349 374 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF565-201 - 499 3.6e-91 295.9 76.3 9 13 6e-12 4.7e-09 36.3 0.3 2 25 378 401 377 402 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF565-201 - 499 3.6e-91 295.9 76.3 10 13 5.5e-11 4.3e-08 33.2 0.2 2 24 406 428 405 430 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF565-201 - 499 3.6e-91 295.9 76.3 11 13 8.7e-07 0.00068 20.0 2.3 2 24 434 456 433 458 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF565-201 - 499 3.6e-91 295.9 76.3 12 13 3.6e-08 2.8e-05 24.3 0.1 2 24 462 484 461 485 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF565-201 - 499 3.6e-91 295.9 76.3 13 13 1.2 9.6e+02 0.5 0.1 3 11 491 499 489 499 0.84 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZNF565-201 - 499 2.7e-76 248.0 78.4 1 12 1.1e-07 8.9e-05 22.7 1.9 2 23 168 189 167 189 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF565-201 - 499 2.7e-76 248.0 78.4 2 12 9.2e-09 7.2e-06 26.2 0.9 3 23 197 217 195 217 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF565-201 - 499 2.7e-76 248.0 78.4 3 12 3.6e-08 2.8e-05 24.3 0.2 1 23 223 245 223 245 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF565-201 - 499 2.7e-76 248.0 78.4 4 12 7.2e-09 5.6e-06 26.5 2.6 1 23 251 273 251 273 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF565-201 - 499 2.7e-76 248.0 78.4 5 12 9.1e-09 7.1e-06 26.2 0.2 1 23 279 301 279 301 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF565-201 - 499 2.7e-76 248.0 78.4 6 12 3.1e-09 2.4e-06 27.7 1.4 1 23 307 329 307 329 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF565-201 - 499 2.7e-76 248.0 78.4 7 12 6.5e-08 5e-05 23.5 0.9 1 23 335 357 335 357 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF565-201 - 499 2.7e-76 248.0 78.4 8 12 6.8e-09 5.3e-06 26.6 1.6 1 23 363 385 363 385 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF565-201 - 499 2.7e-76 248.0 78.4 9 12 6.3e-10 4.9e-07 29.9 0.6 1 23 391 413 391 413 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF565-201 - 499 2.7e-76 248.0 78.4 10 12 1.2e-08 9.2e-06 25.8 1.0 1 23 419 441 419 441 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF565-201 - 499 2.7e-76 248.0 78.4 11 12 2.1e-08 1.7e-05 25.0 0.2 1 23 447 469 447 469 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF565-201 - 499 2.7e-76 248.0 78.4 12 12 8e-05 0.062 13.8 0.0 1 23 475 497 475 497 0.98 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZNF565-201 - 499 3.4e-33 111.4 76.7 1 12 0.00019 0.15 13.0 1.7 2 23 168 189 168 190 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF565-201 - 499 3.4e-33 111.4 76.7 2 12 5.9e-05 0.046 14.6 0.9 1 23 195 217 195 218 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF565-201 - 499 3.4e-33 111.4 76.7 3 12 0.0029 2.3 9.3 0.2 3 23 225 245 223 246 0.91 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF565-201 - 499 3.4e-33 111.4 76.7 4 12 2e-05 0.016 16.0 2.0 1 23 251 273 251 274 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF565-201 - 499 3.4e-33 111.4 76.7 5 12 0.00032 0.25 12.3 0.2 1 23 279 301 279 302 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF565-201 - 499 3.4e-33 111.4 76.7 6 12 5e-05 0.039 14.8 1.3 1 23 307 329 307 330 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF565-201 - 499 3.4e-33 111.4 76.7 7 12 0.00041 0.32 11.9 0.9 1 23 335 357 335 358 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF565-201 - 499 3.4e-33 111.4 76.7 8 12 2.5e-05 0.019 15.7 1.4 1 23 363 385 363 386 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF565-201 - 499 3.4e-33 111.4 76.7 9 12 1.2e-05 0.0092 16.7 0.5 1 23 391 413 391 414 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF565-201 - 499 3.4e-33 111.4 76.7 10 12 2.7e-05 0.021 15.7 0.9 1 23 419 441 419 442 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF565-201 - 499 3.4e-33 111.4 76.7 11 12 0.00039 0.3 12.0 0.1 1 23 447 469 447 470 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF565-201 - 499 3.4e-33 111.4 76.7 12 12 0.0051 4 8.5 0.1 1 23 475 497 475 498 0.93 C2H2-type zinc finger KRAB PF01352.27 42 ZNF565-201 - 499 7.3e-23 79.9 0.0 1 1 1.8e-25 1.4e-22 79.1 0.0 1 42 5 46 5 46 0.99 KRAB box zf-C2H2_jaz PF12171.8 27 ZNF565-201 - 499 5.9e-22 77.4 35.4 1 11 0.058 45 4.5 0.5 4 22 169 187 168 187 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF565-201 - 499 5.9e-22 77.4 35.4 2 11 0.00081 0.63 10.4 0.1 4 22 197 215 194 215 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF565-201 - 499 5.9e-22 77.4 35.4 3 11 0.33 2.6e+02 2.1 0.0 2 21 223 242 222 243 0.82 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF565-201 - 499 5.9e-22 77.4 35.4 4 11 9.6e-05 0.075 13.3 0.6 2 24 251 273 250 273 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF565-201 - 499 5.9e-22 77.4 35.4 5 11 0.014 11 6.5 0.0 2 21 279 298 278 299 0.91 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF565-201 - 499 5.9e-22 77.4 35.4 6 11 0.001 0.8 10.1 0.2 2 22 307 327 306 327 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF565-201 - 499 5.9e-22 77.4 35.4 7 11 0.00048 0.37 11.1 0.1 2 22 335 355 334 355 0.91 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF565-201 - 499 5.9e-22 77.4 35.4 8 11 0.0011 0.85 10.0 0.2 2 22 363 383 362 383 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF565-201 - 499 5.9e-22 77.4 35.4 9 11 0.0021 1.7 9.1 0.1 2 22 391 411 390 411 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF565-201 - 499 5.9e-22 77.4 35.4 10 11 0.0011 0.86 10.0 0.1 2 21 419 438 418 439 0.90 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF565-201 - 499 5.9e-22 77.4 35.4 11 11 0.0044 3.4 8.1 0.0 2 22 447 467 446 467 0.93 Zinc-finger double-stranded RNA-binding XPA_N PF01286.18 32 ZNF565-201 - 499 4.3e-15 55.4 42.5 1 12 0.017 13 5.9 0.1 3 12 168 177 167 185 0.86 XPA protein N-terminal XPA_N PF01286.18 32 ZNF565-201 - 499 4.3e-15 55.4 42.5 2 12 0.021 16 5.6 0.1 4 12 197 205 196 213 0.86 XPA protein N-terminal XPA_N PF01286.18 32 ZNF565-201 - 499 4.3e-15 55.4 42.5 3 12 0.032 25 5.0 0.1 3 12 224 233 222 236 0.87 XPA protein N-terminal XPA_N PF01286.18 32 ZNF565-201 - 499 4.3e-15 55.4 42.5 4 12 0.0063 4.9 7.3 0.1 3 12 252 261 250 268 0.85 XPA protein N-terminal XPA_N PF01286.18 32 ZNF565-201 - 499 4.3e-15 55.4 42.5 5 12 0.048 38 4.4 0.0 3 11 280 288 278 294 0.88 XPA protein N-terminal XPA_N PF01286.18 32 ZNF565-201 - 499 4.3e-15 55.4 42.5 6 12 0.0081 6.3 6.9 0.2 3 12 308 317 306 323 0.86 XPA protein N-terminal XPA_N PF01286.18 32 ZNF565-201 - 499 4.3e-15 55.4 42.5 7 12 0.0062 4.8 7.3 0.2 3 14 336 347 334 348 0.89 XPA protein N-terminal XPA_N PF01286.18 32 ZNF565-201 - 499 4.3e-15 55.4 42.5 8 12 0.011 8.8 6.5 0.3 3 12 364 373 362 375 0.88 XPA protein N-terminal XPA_N PF01286.18 32 ZNF565-201 - 499 4.3e-15 55.4 42.5 9 12 0.0014 1.1 9.4 0.1 3 17 392 406 390 409 0.78 XPA protein N-terminal XPA_N PF01286.18 32 ZNF565-201 - 499 4.3e-15 55.4 42.5 10 12 0.0091 7.1 6.8 0.2 3 12 420 429 418 444 0.86 XPA protein N-terminal XPA_N PF01286.18 32 ZNF565-201 - 499 4.3e-15 55.4 42.5 11 12 0.041 32 4.7 0.1 3 14 448 459 446 465 0.84 XPA protein N-terminal XPA_N PF01286.18 32 ZNF565-201 - 499 4.3e-15 55.4 42.5 12 12 0.0027 2.1 8.4 0.0 3 21 476 495 474 497 0.85 XPA protein N-terminal zf-C2H2_6 PF13912.6 27 ZNF565-201 - 499 5e-14 51.9 70.4 1 12 0.0004 0.31 11.1 2.3 3 24 168 189 168 192 0.89 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF565-201 - 499 5e-14 51.9 70.4 2 12 0.0028 2.2 8.4 0.4 2 13 195 206 195 217 0.87 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF565-201 - 499 5e-14 51.9 70.4 3 12 0.043 33 4.6 0.2 2 20 223 241 223 246 0.80 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF565-201 - 499 5e-14 51.9 70.4 4 12 9.7e-05 0.076 13.0 1.9 2 24 251 273 251 276 0.84 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF565-201 - 499 5e-14 51.9 70.4 5 12 0.0094 7.3 6.7 0.1 2 24 279 301 279 303 0.89 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF565-201 - 499 5e-14 51.9 70.4 6 12 0.00048 0.37 10.8 0.4 2 12 307 317 307 327 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF565-201 - 499 5e-14 51.9 70.4 7 12 0.0036 2.8 8.0 1.0 2 11 335 344 335 344 0.95 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF565-201 - 499 5e-14 51.9 70.4 8 12 0.00046 0.36 10.9 0.6 2 12 363 373 363 385 0.88 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF565-201 - 499 5e-14 51.9 70.4 9 12 0.0085 6.6 6.9 0.4 2 13 391 402 391 413 0.84 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF565-201 - 499 5e-14 51.9 70.4 10 12 0.001 0.78 9.8 0.4 2 11 419 428 419 441 0.86 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF565-201 - 499 5e-14 51.9 70.4 11 12 0.25 1.9e+02 2.2 0.1 2 11 447 456 447 471 0.74 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF565-201 - 499 5e-14 51.9 70.4 12 12 0.16 1.2e+02 2.8 0.1 2 11 475 484 475 497 0.81 C2H2-type zinc finger Zn-ribbon_8 PF09723.10 40 ZNF565-201 - 499 9.4e-13 48.1 70.4 1 10 4.2e-05 0.033 14.3 2.7 7 38 168 206 145 208 0.90 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF565-201 - 499 9.4e-13 48.1 70.4 2 10 8.5e-05 0.066 13.3 2.8 6 36 195 232 194 235 0.89 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF565-201 - 499 9.4e-13 48.1 70.4 3 10 1.1e-05 0.0089 16.1 3.0 6 35 251 287 250 291 0.86 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF565-201 - 499 9.4e-13 48.1 70.4 4 10 0.0001 0.08 13.1 3.7 6 37 279 317 278 319 0.90 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF565-201 - 499 9.4e-13 48.1 70.4 5 10 3.2e-05 0.025 14.7 5.3 6 34 307 342 306 344 0.94 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF565-201 - 499 9.4e-13 48.1 70.4 6 10 0.00016 0.13 12.4 6.6 6 37 335 373 334 376 0.90 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF565-201 - 499 9.4e-13 48.1 70.4 7 10 5.7e-05 0.045 13.9 5.0 6 38 363 402 362 403 0.90 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF565-201 - 499 9.4e-13 48.1 70.4 8 10 1.2e-06 0.00096 19.2 2.2 6 38 391 430 389 432 0.90 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF565-201 - 499 9.4e-13 48.1 70.4 9 10 0.0014 1.1 9.4 6.1 6 34 419 454 417 459 0.89 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF565-201 - 499 9.4e-13 48.1 70.4 10 10 0.044 34 4.6 1.0 6 15 475 484 472 488 0.91 Zinc ribbon domain zf-trcl PF13451.6 48 ZNF565-201 - 499 6e-10 38.9 48.8 1 11 0.34 2.7e+02 1.6 0.2 5 14 167 176 164 177 0.82 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF565-201 - 499 6e-10 38.9 48.8 2 11 0.064 50 3.9 0.2 3 14 193 204 191 205 0.87 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF565-201 - 499 6e-10 38.9 48.8 3 11 0.015 12 5.9 0.1 3 14 221 232 219 236 0.88 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF565-201 - 499 6e-10 38.9 48.8 4 11 0.06 46 4.0 0.3 3 14 249 260 249 263 0.89 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF565-201 - 499 6e-10 38.9 48.8 5 11 0.00079 0.62 10.0 0.1 3 15 277 289 275 293 0.91 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF565-201 - 499 6e-10 38.9 48.8 6 11 0.1 78 3.3 0.1 4 14 306 316 301 321 0.79 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF565-201 - 499 6e-10 38.9 48.8 7 11 0.0035 2.8 7.9 2.7 3 45 333 374 331 376 0.74 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF565-201 - 499 6e-10 38.9 48.8 8 11 0.0046 3.6 7.5 0.1 2 14 388 400 387 402 0.92 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF565-201 - 499 6e-10 38.9 48.8 9 11 0.0016 1.3 9.0 0.1 2 15 416 429 415 433 0.93 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF565-201 - 499 6e-10 38.9 48.8 10 11 0.05 39 4.3 0.3 3 15 445 457 443 461 0.87 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF565-201 - 499 6e-10 38.9 48.8 11 11 0.02 15 5.6 0.0 3 15 473 485 473 495 0.85 Probable zinc-ribbon domain zf_UBZ PF18439.1 32 ZNF565-201 - 499 1.1e-09 37.7 54.8 1 12 0.17 1.3e+02 2.2 0.3 5 14 169 178 166 186 0.77 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF565-201 - 499 1.1e-09 37.7 54.8 2 12 0.028 22 4.8 0.1 4 17 196 210 193 214 0.75 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF565-201 - 499 1.1e-09 37.7 54.8 3 12 0.04 31 4.3 0.1 3 12 223 232 221 242 0.80 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF565-201 - 499 1.1e-09 37.7 54.8 4 12 0.0045 3.5 7.3 0.3 3 16 251 265 249 270 0.81 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF565-201 - 499 1.1e-09 37.7 54.8 5 12 0.013 10 5.8 0.1 3 12 279 288 277 297 0.84 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF565-201 - 499 1.1e-09 37.7 54.8 6 12 0.0056 4.3 7.0 0.4 3 20 307 325 305 326 0.83 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF565-201 - 499 1.1e-09 37.7 54.8 7 12 0.0068 5.3 6.7 0.4 3 21 335 354 333 354 0.85 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF565-201 - 499 1.1e-09 37.7 54.8 8 12 0.0033 2.5 7.7 0.5 3 21 363 382 361 382 0.87 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF565-201 - 499 1.1e-09 37.7 54.8 9 12 0.0094 7.4 6.3 0.1 3 15 391 403 389 410 0.79 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF565-201 - 499 1.1e-09 37.7 54.8 10 12 0.0087 6.8 6.4 0.3 3 20 419 436 417 438 0.75 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF565-201 - 499 1.1e-09 37.7 54.8 11 12 0.0022 1.7 8.3 0.2 3 21 447 466 445 466 0.92 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF565-201 - 499 1.1e-09 37.7 54.8 12 12 0.016 13 5.5 0.1 3 20 475 493 473 494 0.87 Ubiquitin-Binding Zinc Finger # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF565-201.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF565-201.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF565-201.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF565-201.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF565-201.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:09:12 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZNF565-202 - 539 1.1e-90 294.3 76.3 1 13 0.0006 0.49 10.9 1.0 9 25 201 217 188 218 0.75 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF565-202 - 539 1.1e-90 294.3 76.3 2 13 2.4e-09 1.9e-06 28.0 0.9 1 25 221 245 221 246 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF565-202 - 539 1.1e-90 294.3 76.3 3 13 3.9e-11 3.2e-08 33.7 0.5 1 25 249 273 249 274 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF565-202 - 539 1.1e-90 294.3 76.3 4 13 2.4e-10 1.9e-07 31.2 0.4 4 25 280 301 277 302 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF565-202 - 539 1.1e-90 294.3 76.3 5 13 3e-10 2.5e-07 30.8 0.2 4 24 308 328 305 330 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF565-202 - 539 1.1e-90 294.3 76.3 6 13 1.3e-09 1e-06 28.9 0.3 2 25 334 357 333 358 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF565-202 - 539 1.1e-90 294.3 76.3 7 13 5e-11 4.1e-08 33.3 0.8 2 26 362 386 361 386 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF565-202 - 539 1.1e-90 294.3 76.3 8 13 3.5e-11 2.9e-08 33.8 0.7 3 25 391 413 389 414 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF565-202 - 539 1.1e-90 294.3 76.3 9 13 6.3e-12 5.1e-09 36.1 0.3 2 25 418 441 417 442 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF565-202 - 539 1.1e-90 294.3 76.3 10 13 5.8e-11 4.7e-08 33.1 0.2 2 24 446 468 445 470 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF565-202 - 539 1.1e-90 294.3 76.3 11 13 9.2e-07 0.00075 19.8 2.3 2 24 474 496 473 498 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF565-202 - 539 1.1e-90 294.3 76.3 12 13 3.8e-08 3.1e-05 24.2 0.1 2 24 502 524 501 525 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF565-202 - 539 1.1e-90 294.3 76.3 13 13 1.3 1e+03 0.4 0.1 3 11 531 539 529 539 0.84 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZNF565-202 - 539 7.3e-76 246.6 78.4 1 12 1.2e-07 9.7e-05 22.6 1.9 2 23 208 229 207 229 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF565-202 - 539 7.3e-76 246.6 78.4 2 12 9.7e-09 7.9e-06 26.0 0.9 3 23 237 257 235 257 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF565-202 - 539 7.3e-76 246.6 78.4 3 12 3.8e-08 3.1e-05 24.2 0.2 1 23 263 285 263 285 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF565-202 - 539 7.3e-76 246.6 78.4 4 12 7.6e-09 6.2e-06 26.4 2.6 1 23 291 313 291 313 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF565-202 - 539 7.3e-76 246.6 78.4 5 12 9.6e-09 7.8e-06 26.1 0.2 1 23 319 341 319 341 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF565-202 - 539 7.3e-76 246.6 78.4 6 12 3.3e-09 2.7e-06 27.5 1.4 1 23 347 369 347 369 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF565-202 - 539 7.3e-76 246.6 78.4 7 12 6.8e-08 5.5e-05 23.4 0.9 1 23 375 397 375 397 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF565-202 - 539 7.3e-76 246.6 78.4 8 12 7.1e-09 5.8e-06 26.5 1.6 1 23 403 425 403 425 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF565-202 - 539 7.3e-76 246.6 78.4 9 12 6.6e-10 5.4e-07 29.7 0.6 1 23 431 453 431 453 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF565-202 - 539 7.3e-76 246.6 78.4 10 12 1.2e-08 1e-05 25.7 1.0 1 23 459 481 459 481 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF565-202 - 539 7.3e-76 246.6 78.4 11 12 2.2e-08 1.8e-05 24.9 0.2 1 23 487 509 487 509 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF565-202 - 539 7.3e-76 246.6 78.4 12 12 8.3e-05 0.068 13.7 0.0 1 23 515 537 515 537 0.98 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZNF565-202 - 539 9.6e-33 110.0 76.7 1 12 0.0002 0.16 12.9 1.7 2 23 208 229 208 230 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF565-202 - 539 9.6e-33 110.0 76.7 2 12 6.1e-05 0.05 14.5 0.9 1 23 235 257 235 258 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF565-202 - 539 9.6e-33 110.0 76.7 3 12 0.0031 2.5 9.2 0.2 3 23 265 285 263 286 0.91 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF565-202 - 539 9.6e-33 110.0 76.7 4 12 2.1e-05 0.017 15.9 2.0 1 23 291 313 291 314 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF565-202 - 539 9.6e-33 110.0 76.7 5 12 0.00033 0.27 12.2 0.2 1 23 319 341 319 342 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF565-202 - 539 9.6e-33 110.0 76.7 6 12 5.3e-05 0.043 14.7 1.3 1 23 347 369 347 370 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF565-202 - 539 9.6e-33 110.0 76.7 7 12 0.00043 0.35 11.8 0.9 1 23 375 397 375 398 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF565-202 - 539 9.6e-33 110.0 76.7 8 12 2.6e-05 0.021 15.6 1.4 1 23 403 425 403 426 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF565-202 - 539 9.6e-33 110.0 76.7 9 12 1.2e-05 0.01 16.6 0.5 1 23 431 453 431 454 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF565-202 - 539 9.6e-33 110.0 76.7 10 12 2.8e-05 0.023 15.5 0.9 1 23 459 481 459 482 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF565-202 - 539 9.6e-33 110.0 76.7 11 12 0.00041 0.33 11.9 0.1 1 23 487 509 487 510 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF565-202 - 539 9.6e-33 110.0 76.7 12 12 0.0054 4.4 8.4 0.1 1 23 515 537 515 538 0.93 C2H2-type zinc finger KRAB PF01352.27 42 ZNF565-202 - 539 8.1e-23 79.8 0.0 1 1 1.9e-25 1.5e-22 78.9 0.0 1 42 45 86 45 86 0.99 KRAB box zf-C2H2_jaz PF12171.8 27 ZNF565-202 - 539 1.6e-21 76.1 35.4 1 11 0.061 50 4.4 0.5 4 22 209 227 208 227 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF565-202 - 539 1.6e-21 76.1 35.4 2 11 0.00084 0.69 10.3 0.1 4 22 237 255 234 255 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF565-202 - 539 1.6e-21 76.1 35.4 3 11 0.35 2.9e+02 1.9 0.0 2 21 263 282 262 283 0.82 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF565-202 - 539 1.6e-21 76.1 35.4 4 11 0.0001 0.082 13.2 0.6 2 24 291 313 290 313 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF565-202 - 539 1.6e-21 76.1 35.4 5 11 0.014 12 6.3 0.0 2 21 319 338 318 339 0.91 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF565-202 - 539 1.6e-21 76.1 35.4 6 11 0.0011 0.87 9.9 0.2 2 22 347 367 346 367 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF565-202 - 539 1.6e-21 76.1 35.4 7 11 0.0005 0.41 11.0 0.1 2 22 375 395 374 395 0.91 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF565-202 - 539 1.6e-21 76.1 35.4 8 11 0.0011 0.93 9.9 0.2 2 22 403 423 402 423 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF565-202 - 539 1.6e-21 76.1 35.4 9 11 0.0022 1.8 8.9 0.1 2 22 431 451 430 451 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF565-202 - 539 1.6e-21 76.1 35.4 10 11 0.0012 0.94 9.8 0.1 2 21 459 478 458 479 0.90 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF565-202 - 539 1.6e-21 76.1 35.4 11 11 0.0046 3.7 7.9 0.0 2 22 487 507 486 507 0.93 Zinc-finger double-stranded RNA-binding XPA_N PF01286.18 32 ZNF565-202 - 539 1.2e-14 54.0 42.5 1 12 0.017 14 5.8 0.1 3 12 208 217 207 225 0.86 XPA protein N-terminal XPA_N PF01286.18 32 ZNF565-202 - 539 1.2e-14 54.0 42.5 2 12 0.022 18 5.5 0.1 4 12 237 245 236 253 0.86 XPA protein N-terminal XPA_N PF01286.18 32 ZNF565-202 - 539 1.2e-14 54.0 42.5 3 12 0.034 28 4.9 0.1 3 12 264 273 262 276 0.87 XPA protein N-terminal XPA_N PF01286.18 32 ZNF565-202 - 539 1.2e-14 54.0 42.5 4 12 0.0066 5.4 7.2 0.1 3 12 292 301 290 308 0.85 XPA protein N-terminal XPA_N PF01286.18 32 ZNF565-202 - 539 1.2e-14 54.0 42.5 5 12 0.051 41 4.3 0.0 3 11 320 328 318 334 0.88 XPA protein N-terminal XPA_N PF01286.18 32 ZNF565-202 - 539 1.2e-14 54.0 42.5 6 12 0.0085 6.9 6.8 0.2 3 12 348 357 346 363 0.86 XPA protein N-terminal XPA_N PF01286.18 32 ZNF565-202 - 539 1.2e-14 54.0 42.5 7 12 0.0064 5.2 7.2 0.2 3 14 376 387 374 388 0.89 XPA protein N-terminal XPA_N PF01286.18 32 ZNF565-202 - 539 1.2e-14 54.0 42.5 8 12 0.012 9.6 6.4 0.3 3 12 404 413 402 415 0.88 XPA protein N-terminal XPA_N PF01286.18 32 ZNF565-202 - 539 1.2e-14 54.0 42.5 9 12 0.0014 1.2 9.3 0.1 3 17 432 446 430 449 0.78 XPA protein N-terminal XPA_N PF01286.18 32 ZNF565-202 - 539 1.2e-14 54.0 42.5 10 12 0.0095 7.8 6.6 0.2 3 12 460 469 458 484 0.86 XPA protein N-terminal XPA_N PF01286.18 32 ZNF565-202 - 539 1.2e-14 54.0 42.5 11 12 0.043 35 4.5 0.1 3 14 488 499 486 505 0.84 XPA protein N-terminal XPA_N PF01286.18 32 ZNF565-202 - 539 1.2e-14 54.0 42.5 12 12 0.0029 2.3 8.3 0.0 3 21 516 535 514 537 0.85 XPA protein N-terminal zf-C2H2_6 PF13912.6 27 ZNF565-202 - 539 1.4e-13 50.5 70.4 1 12 0.00042 0.34 10.9 2.3 3 24 208 229 208 232 0.89 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF565-202 - 539 1.4e-13 50.5 70.4 2 12 0.003 2.4 8.2 0.4 2 13 235 246 235 257 0.87 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF565-202 - 539 1.4e-13 50.5 70.4 3 12 0.045 37 4.5 0.2 2 20 263 281 263 286 0.80 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF565-202 - 539 1.4e-13 50.5 70.4 4 12 0.0001 0.083 12.9 1.9 2 24 291 313 291 316 0.84 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF565-202 - 539 1.4e-13 50.5 70.4 5 12 0.0098 8 6.6 0.1 2 24 319 341 319 343 0.89 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF565-202 - 539 1.4e-13 50.5 70.4 6 12 0.0005 0.41 10.7 0.4 2 12 347 357 347 367 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF565-202 - 539 1.4e-13 50.5 70.4 7 12 0.0037 3 7.9 1.0 2 11 375 384 375 384 0.95 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF565-202 - 539 1.4e-13 50.5 70.4 8 12 0.00048 0.39 10.8 0.6 2 12 403 413 403 425 0.88 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF565-202 - 539 1.4e-13 50.5 70.4 9 12 0.0089 7.2 6.7 0.4 2 13 431 442 431 453 0.84 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF565-202 - 539 1.4e-13 50.5 70.4 10 12 0.001 0.85 9.7 0.4 2 11 459 468 459 481 0.86 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF565-202 - 539 1.4e-13 50.5 70.4 11 12 0.26 2.1e+02 2.1 0.1 2 11 487 496 487 511 0.74 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF565-202 - 539 1.4e-13 50.5 70.4 12 12 0.17 1.4e+02 2.7 0.1 2 11 515 524 515 537 0.81 C2H2-type zinc finger Zn-ribbon_8 PF09723.10 40 ZNF565-202 - 539 1.8e-12 47.2 70.4 1 10 4e-05 0.032 14.3 2.5 7 38 208 246 185 248 0.90 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF565-202 - 539 1.8e-12 47.2 70.4 2 10 0.0001 0.084 13.0 3.0 6 36 235 272 233 276 0.89 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF565-202 - 539 1.8e-12 47.2 70.4 3 10 1e-05 0.0085 16.2 2.8 6 35 291 327 290 330 0.86 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF565-202 - 539 1.8e-12 47.2 70.4 4 10 0.00011 0.09 12.9 3.7 6 37 319 357 318 359 0.90 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF565-202 - 539 1.8e-12 47.2 70.4 5 10 3.2e-05 0.026 14.6 5.4 6 34 347 382 346 386 0.94 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF565-202 - 539 1.8e-12 47.2 70.4 6 10 0.00017 0.14 12.3 6.6 6 37 375 413 374 416 0.90 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF565-202 - 539 1.8e-12 47.2 70.4 7 10 5.7e-05 0.047 13.8 4.9 6 38 403 442 402 443 0.90 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF565-202 - 539 1.8e-12 47.2 70.4 8 10 1.4e-06 0.0011 19.0 2.3 6 38 431 470 430 472 0.90 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF565-202 - 539 1.8e-12 47.2 70.4 9 10 0.0018 1.4 9.1 6.3 6 34 459 494 458 499 0.89 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF565-202 - 539 1.8e-12 47.2 70.4 10 10 0.049 40 4.4 1.0 6 15 515 524 512 526 0.90 Zinc ribbon domain zf-trcl PF13451.6 48 ZNF565-202 - 539 8.3e-10 38.4 47.9 1 11 0.35 2.9e+02 1.5 0.2 5 14 207 216 204 217 0.82 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF565-202 - 539 8.3e-10 38.4 47.9 2 11 0.066 54 3.8 0.2 3 14 233 244 231 245 0.87 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF565-202 - 539 8.3e-10 38.4 47.9 3 11 0.016 13 5.8 0.1 3 14 261 272 259 276 0.88 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF565-202 - 539 8.3e-10 38.4 47.9 4 11 0.062 51 3.9 0.3 3 14 289 300 289 303 0.89 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF565-202 - 539 8.3e-10 38.4 47.9 5 11 0.00081 0.66 9.9 0.0 3 15 317 329 315 334 0.92 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF565-202 - 539 8.3e-10 38.4 47.9 6 11 0.1 83 3.2 0.1 4 14 346 356 339 361 0.80 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF565-202 - 539 8.3e-10 38.4 47.9 7 11 0.0036 3 7.8 2.7 3 45 373 414 371 416 0.74 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF565-202 - 539 8.3e-10 38.4 47.9 8 11 0.0048 3.9 7.4 0.1 2 14 428 440 427 442 0.92 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF565-202 - 539 8.3e-10 38.4 47.9 9 11 0.0017 1.4 8.9 0.1 2 15 456 469 455 473 0.93 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF565-202 - 539 8.3e-10 38.4 47.9 10 11 0.052 42 4.1 0.3 3 15 485 497 483 501 0.87 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF565-202 - 539 8.3e-10 38.4 47.9 11 11 0.02 17 5.4 0.0 3 15 513 525 513 535 0.85 Probable zinc-ribbon domain zf_UBZ PF18439.1 32 ZNF565-202 - 539 2.9e-09 36.4 54.8 1 12 0.18 1.5e+02 2.1 0.3 5 14 209 218 206 226 0.77 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF565-202 - 539 2.9e-09 36.4 54.8 2 12 0.029 24 4.6 0.1 4 17 236 250 233 254 0.75 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF565-202 - 539 2.9e-09 36.4 54.8 3 12 0.042 34 4.1 0.1 3 12 263 272 261 282 0.80 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF565-202 - 539 2.9e-09 36.4 54.8 4 12 0.0047 3.8 7.2 0.3 3 16 291 305 289 310 0.81 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF565-202 - 539 2.9e-09 36.4 54.8 5 12 0.014 11 5.7 0.1 3 12 319 328 317 337 0.84 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF565-202 - 539 2.9e-09 36.4 54.8 6 12 0.0058 4.7 6.9 0.4 3 20 347 365 345 366 0.83 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF565-202 - 539 2.9e-09 36.4 54.8 7 12 0.0071 5.8 6.6 0.4 3 21 375 394 373 394 0.85 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF565-202 - 539 2.9e-09 36.4 54.8 8 12 0.0034 2.8 7.6 0.5 3 21 403 422 401 422 0.87 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF565-202 - 539 2.9e-09 36.4 54.8 9 12 0.0099 8 6.1 0.1 3 15 431 443 429 450 0.79 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF565-202 - 539 2.9e-09 36.4 54.8 10 12 0.0091 7.4 6.3 0.3 3 20 459 476 457 478 0.75 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF565-202 - 539 2.9e-09 36.4 54.8 11 12 0.0023 1.9 8.2 0.2 3 21 487 506 485 506 0.92 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF565-202 - 539 2.9e-09 36.4 54.8 12 12 0.017 14 5.4 0.1 3 20 515 533 513 534 0.87 Ubiquitin-Binding Zinc Finger # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF565-202.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF565-202.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF565-202.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF565-202.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF565-202.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:09:13 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZNF565-203 - 499 3.6e-91 295.9 76.3 1 13 0.00057 0.45 11.0 1.0 9 25 161 177 148 178 0.75 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF565-203 - 499 3.6e-91 295.9 76.3 2 13 2.3e-09 1.8e-06 28.1 0.9 1 25 181 205 181 206 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF565-203 - 499 3.6e-91 295.9 76.3 3 13 3.7e-11 2.9e-08 33.8 0.5 1 25 209 233 209 234 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF565-203 - 499 3.6e-91 295.9 76.3 4 13 2.3e-10 1.8e-07 31.3 0.4 4 25 240 261 237 262 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF565-203 - 499 3.6e-91 295.9 76.3 5 13 2.9e-10 2.2e-07 31.0 0.2 4 24 268 288 265 290 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF565-203 - 499 3.6e-91 295.9 76.3 6 13 1.2e-09 9.5e-07 29.0 0.3 2 25 294 317 293 318 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF565-203 - 499 3.6e-91 295.9 76.3 7 13 4.8e-11 3.7e-08 33.4 0.8 2 26 322 346 321 346 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF565-203 - 499 3.6e-91 295.9 76.3 8 13 3.4e-11 2.6e-08 33.9 0.7 3 25 351 373 349 374 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF565-203 - 499 3.6e-91 295.9 76.3 9 13 6e-12 4.7e-09 36.3 0.3 2 25 378 401 377 402 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF565-203 - 499 3.6e-91 295.9 76.3 10 13 5.5e-11 4.3e-08 33.2 0.2 2 24 406 428 405 430 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF565-203 - 499 3.6e-91 295.9 76.3 11 13 8.7e-07 0.00068 20.0 2.3 2 24 434 456 433 458 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF565-203 - 499 3.6e-91 295.9 76.3 12 13 3.6e-08 2.8e-05 24.3 0.1 2 24 462 484 461 485 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF565-203 - 499 3.6e-91 295.9 76.3 13 13 1.2 9.6e+02 0.5 0.1 3 11 491 499 489 499 0.84 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZNF565-203 - 499 2.7e-76 248.0 78.4 1 12 1.1e-07 8.9e-05 22.7 1.9 2 23 168 189 167 189 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF565-203 - 499 2.7e-76 248.0 78.4 2 12 9.2e-09 7.2e-06 26.2 0.9 3 23 197 217 195 217 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF565-203 - 499 2.7e-76 248.0 78.4 3 12 3.6e-08 2.8e-05 24.3 0.2 1 23 223 245 223 245 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF565-203 - 499 2.7e-76 248.0 78.4 4 12 7.2e-09 5.6e-06 26.5 2.6 1 23 251 273 251 273 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF565-203 - 499 2.7e-76 248.0 78.4 5 12 9.1e-09 7.1e-06 26.2 0.2 1 23 279 301 279 301 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF565-203 - 499 2.7e-76 248.0 78.4 6 12 3.1e-09 2.4e-06 27.7 1.4 1 23 307 329 307 329 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF565-203 - 499 2.7e-76 248.0 78.4 7 12 6.5e-08 5e-05 23.5 0.9 1 23 335 357 335 357 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF565-203 - 499 2.7e-76 248.0 78.4 8 12 6.8e-09 5.3e-06 26.6 1.6 1 23 363 385 363 385 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF565-203 - 499 2.7e-76 248.0 78.4 9 12 6.3e-10 4.9e-07 29.9 0.6 1 23 391 413 391 413 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF565-203 - 499 2.7e-76 248.0 78.4 10 12 1.2e-08 9.2e-06 25.8 1.0 1 23 419 441 419 441 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF565-203 - 499 2.7e-76 248.0 78.4 11 12 2.1e-08 1.7e-05 25.0 0.2 1 23 447 469 447 469 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF565-203 - 499 2.7e-76 248.0 78.4 12 12 8e-05 0.062 13.8 0.0 1 23 475 497 475 497 0.98 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZNF565-203 - 499 3.4e-33 111.4 76.7 1 12 0.00019 0.15 13.0 1.7 2 23 168 189 168 190 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF565-203 - 499 3.4e-33 111.4 76.7 2 12 5.9e-05 0.046 14.6 0.9 1 23 195 217 195 218 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF565-203 - 499 3.4e-33 111.4 76.7 3 12 0.0029 2.3 9.3 0.2 3 23 225 245 223 246 0.91 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF565-203 - 499 3.4e-33 111.4 76.7 4 12 2e-05 0.016 16.0 2.0 1 23 251 273 251 274 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF565-203 - 499 3.4e-33 111.4 76.7 5 12 0.00032 0.25 12.3 0.2 1 23 279 301 279 302 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF565-203 - 499 3.4e-33 111.4 76.7 6 12 5e-05 0.039 14.8 1.3 1 23 307 329 307 330 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF565-203 - 499 3.4e-33 111.4 76.7 7 12 0.00041 0.32 11.9 0.9 1 23 335 357 335 358 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF565-203 - 499 3.4e-33 111.4 76.7 8 12 2.5e-05 0.019 15.7 1.4 1 23 363 385 363 386 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF565-203 - 499 3.4e-33 111.4 76.7 9 12 1.2e-05 0.0092 16.7 0.5 1 23 391 413 391 414 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF565-203 - 499 3.4e-33 111.4 76.7 10 12 2.7e-05 0.021 15.7 0.9 1 23 419 441 419 442 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF565-203 - 499 3.4e-33 111.4 76.7 11 12 0.00039 0.3 12.0 0.1 1 23 447 469 447 470 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF565-203 - 499 3.4e-33 111.4 76.7 12 12 0.0051 4 8.5 0.1 1 23 475 497 475 498 0.93 C2H2-type zinc finger KRAB PF01352.27 42 ZNF565-203 - 499 7.3e-23 79.9 0.0 1 1 1.8e-25 1.4e-22 79.1 0.0 1 42 5 46 5 46 0.99 KRAB box zf-C2H2_jaz PF12171.8 27 ZNF565-203 - 499 5.9e-22 77.4 35.4 1 11 0.058 45 4.5 0.5 4 22 169 187 168 187 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF565-203 - 499 5.9e-22 77.4 35.4 2 11 0.00081 0.63 10.4 0.1 4 22 197 215 194 215 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF565-203 - 499 5.9e-22 77.4 35.4 3 11 0.33 2.6e+02 2.1 0.0 2 21 223 242 222 243 0.82 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF565-203 - 499 5.9e-22 77.4 35.4 4 11 9.6e-05 0.075 13.3 0.6 2 24 251 273 250 273 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF565-203 - 499 5.9e-22 77.4 35.4 5 11 0.014 11 6.5 0.0 2 21 279 298 278 299 0.91 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF565-203 - 499 5.9e-22 77.4 35.4 6 11 0.001 0.8 10.1 0.2 2 22 307 327 306 327 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF565-203 - 499 5.9e-22 77.4 35.4 7 11 0.00048 0.37 11.1 0.1 2 22 335 355 334 355 0.91 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF565-203 - 499 5.9e-22 77.4 35.4 8 11 0.0011 0.85 10.0 0.2 2 22 363 383 362 383 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF565-203 - 499 5.9e-22 77.4 35.4 9 11 0.0021 1.7 9.1 0.1 2 22 391 411 390 411 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF565-203 - 499 5.9e-22 77.4 35.4 10 11 0.0011 0.86 10.0 0.1 2 21 419 438 418 439 0.90 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF565-203 - 499 5.9e-22 77.4 35.4 11 11 0.0044 3.4 8.1 0.0 2 22 447 467 446 467 0.93 Zinc-finger double-stranded RNA-binding XPA_N PF01286.18 32 ZNF565-203 - 499 4.3e-15 55.4 42.5 1 12 0.017 13 5.9 0.1 3 12 168 177 167 185 0.86 XPA protein N-terminal XPA_N PF01286.18 32 ZNF565-203 - 499 4.3e-15 55.4 42.5 2 12 0.021 16 5.6 0.1 4 12 197 205 196 213 0.86 XPA protein N-terminal XPA_N PF01286.18 32 ZNF565-203 - 499 4.3e-15 55.4 42.5 3 12 0.032 25 5.0 0.1 3 12 224 233 222 236 0.87 XPA protein N-terminal XPA_N PF01286.18 32 ZNF565-203 - 499 4.3e-15 55.4 42.5 4 12 0.0063 4.9 7.3 0.1 3 12 252 261 250 268 0.85 XPA protein N-terminal XPA_N PF01286.18 32 ZNF565-203 - 499 4.3e-15 55.4 42.5 5 12 0.048 38 4.4 0.0 3 11 280 288 278 294 0.88 XPA protein N-terminal XPA_N PF01286.18 32 ZNF565-203 - 499 4.3e-15 55.4 42.5 6 12 0.0081 6.3 6.9 0.2 3 12 308 317 306 323 0.86 XPA protein N-terminal XPA_N PF01286.18 32 ZNF565-203 - 499 4.3e-15 55.4 42.5 7 12 0.0062 4.8 7.3 0.2 3 14 336 347 334 348 0.89 XPA protein N-terminal XPA_N PF01286.18 32 ZNF565-203 - 499 4.3e-15 55.4 42.5 8 12 0.011 8.8 6.5 0.3 3 12 364 373 362 375 0.88 XPA protein N-terminal XPA_N PF01286.18 32 ZNF565-203 - 499 4.3e-15 55.4 42.5 9 12 0.0014 1.1 9.4 0.1 3 17 392 406 390 409 0.78 XPA protein N-terminal XPA_N PF01286.18 32 ZNF565-203 - 499 4.3e-15 55.4 42.5 10 12 0.0091 7.1 6.8 0.2 3 12 420 429 418 444 0.86 XPA protein N-terminal XPA_N PF01286.18 32 ZNF565-203 - 499 4.3e-15 55.4 42.5 11 12 0.041 32 4.7 0.1 3 14 448 459 446 465 0.84 XPA protein N-terminal XPA_N PF01286.18 32 ZNF565-203 - 499 4.3e-15 55.4 42.5 12 12 0.0027 2.1 8.4 0.0 3 21 476 495 474 497 0.85 XPA protein N-terminal zf-C2H2_6 PF13912.6 27 ZNF565-203 - 499 5e-14 51.9 70.4 1 12 0.0004 0.31 11.1 2.3 3 24 168 189 168 192 0.89 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF565-203 - 499 5e-14 51.9 70.4 2 12 0.0028 2.2 8.4 0.4 2 13 195 206 195 217 0.87 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF565-203 - 499 5e-14 51.9 70.4 3 12 0.043 33 4.6 0.2 2 20 223 241 223 246 0.80 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF565-203 - 499 5e-14 51.9 70.4 4 12 9.7e-05 0.076 13.0 1.9 2 24 251 273 251 276 0.84 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF565-203 - 499 5e-14 51.9 70.4 5 12 0.0094 7.3 6.7 0.1 2 24 279 301 279 303 0.89 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF565-203 - 499 5e-14 51.9 70.4 6 12 0.00048 0.37 10.8 0.4 2 12 307 317 307 327 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF565-203 - 499 5e-14 51.9 70.4 7 12 0.0036 2.8 8.0 1.0 2 11 335 344 335 344 0.95 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF565-203 - 499 5e-14 51.9 70.4 8 12 0.00046 0.36 10.9 0.6 2 12 363 373 363 385 0.88 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF565-203 - 499 5e-14 51.9 70.4 9 12 0.0085 6.6 6.9 0.4 2 13 391 402 391 413 0.84 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF565-203 - 499 5e-14 51.9 70.4 10 12 0.001 0.78 9.8 0.4 2 11 419 428 419 441 0.86 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF565-203 - 499 5e-14 51.9 70.4 11 12 0.25 1.9e+02 2.2 0.1 2 11 447 456 447 471 0.74 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF565-203 - 499 5e-14 51.9 70.4 12 12 0.16 1.2e+02 2.8 0.1 2 11 475 484 475 497 0.81 C2H2-type zinc finger Zn-ribbon_8 PF09723.10 40 ZNF565-203 - 499 9.4e-13 48.1 70.4 1 10 4.2e-05 0.033 14.3 2.7 7 38 168 206 145 208 0.90 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF565-203 - 499 9.4e-13 48.1 70.4 2 10 8.5e-05 0.066 13.3 2.8 6 36 195 232 194 235 0.89 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF565-203 - 499 9.4e-13 48.1 70.4 3 10 1.1e-05 0.0089 16.1 3.0 6 35 251 287 250 291 0.86 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF565-203 - 499 9.4e-13 48.1 70.4 4 10 0.0001 0.08 13.1 3.7 6 37 279 317 278 319 0.90 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF565-203 - 499 9.4e-13 48.1 70.4 5 10 3.2e-05 0.025 14.7 5.3 6 34 307 342 306 344 0.94 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF565-203 - 499 9.4e-13 48.1 70.4 6 10 0.00016 0.13 12.4 6.6 6 37 335 373 334 376 0.90 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF565-203 - 499 9.4e-13 48.1 70.4 7 10 5.7e-05 0.045 13.9 5.0 6 38 363 402 362 403 0.90 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF565-203 - 499 9.4e-13 48.1 70.4 8 10 1.2e-06 0.00096 19.2 2.2 6 38 391 430 389 432 0.90 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF565-203 - 499 9.4e-13 48.1 70.4 9 10 0.0014 1.1 9.4 6.1 6 34 419 454 417 459 0.89 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF565-203 - 499 9.4e-13 48.1 70.4 10 10 0.044 34 4.6 1.0 6 15 475 484 472 488 0.91 Zinc ribbon domain zf-trcl PF13451.6 48 ZNF565-203 - 499 6e-10 38.9 48.8 1 11 0.34 2.7e+02 1.6 0.2 5 14 167 176 164 177 0.82 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF565-203 - 499 6e-10 38.9 48.8 2 11 0.064 50 3.9 0.2 3 14 193 204 191 205 0.87 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF565-203 - 499 6e-10 38.9 48.8 3 11 0.015 12 5.9 0.1 3 14 221 232 219 236 0.88 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF565-203 - 499 6e-10 38.9 48.8 4 11 0.06 46 4.0 0.3 3 14 249 260 249 263 0.89 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF565-203 - 499 6e-10 38.9 48.8 5 11 0.00079 0.62 10.0 0.1 3 15 277 289 275 293 0.91 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF565-203 - 499 6e-10 38.9 48.8 6 11 0.1 78 3.3 0.1 4 14 306 316 301 321 0.79 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF565-203 - 499 6e-10 38.9 48.8 7 11 0.0035 2.8 7.9 2.7 3 45 333 374 331 376 0.74 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF565-203 - 499 6e-10 38.9 48.8 8 11 0.0046 3.6 7.5 0.1 2 14 388 400 387 402 0.92 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF565-203 - 499 6e-10 38.9 48.8 9 11 0.0016 1.3 9.0 0.1 2 15 416 429 415 433 0.93 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF565-203 - 499 6e-10 38.9 48.8 10 11 0.05 39 4.3 0.3 3 15 445 457 443 461 0.87 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF565-203 - 499 6e-10 38.9 48.8 11 11 0.02 15 5.6 0.0 3 15 473 485 473 495 0.85 Probable zinc-ribbon domain zf_UBZ PF18439.1 32 ZNF565-203 - 499 1.1e-09 37.7 54.8 1 12 0.17 1.3e+02 2.2 0.3 5 14 169 178 166 186 0.77 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF565-203 - 499 1.1e-09 37.7 54.8 2 12 0.028 22 4.8 0.1 4 17 196 210 193 214 0.75 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF565-203 - 499 1.1e-09 37.7 54.8 3 12 0.04 31 4.3 0.1 3 12 223 232 221 242 0.80 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF565-203 - 499 1.1e-09 37.7 54.8 4 12 0.0045 3.5 7.3 0.3 3 16 251 265 249 270 0.81 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF565-203 - 499 1.1e-09 37.7 54.8 5 12 0.013 10 5.8 0.1 3 12 279 288 277 297 0.84 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF565-203 - 499 1.1e-09 37.7 54.8 6 12 0.0056 4.3 7.0 0.4 3 20 307 325 305 326 0.83 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF565-203 - 499 1.1e-09 37.7 54.8 7 12 0.0068 5.3 6.7 0.4 3 21 335 354 333 354 0.85 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF565-203 - 499 1.1e-09 37.7 54.8 8 12 0.0033 2.5 7.7 0.5 3 21 363 382 361 382 0.87 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF565-203 - 499 1.1e-09 37.7 54.8 9 12 0.0094 7.4 6.3 0.1 3 15 391 403 389 410 0.79 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF565-203 - 499 1.1e-09 37.7 54.8 10 12 0.0087 6.8 6.4 0.3 3 20 419 436 417 438 0.75 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF565-203 - 499 1.1e-09 37.7 54.8 11 12 0.0022 1.7 8.3 0.2 3 21 447 466 445 466 0.92 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF565-203 - 499 1.1e-09 37.7 54.8 12 12 0.016 13 5.5 0.1 3 20 475 493 473 494 0.87 Ubiquitin-Binding Zinc Finger # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF565-203.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF565-203.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF565-203.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF565-203.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF565-203.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:09:13 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF565-204.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF565-204.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF565-204.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF565-204.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF565-204.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:09:14 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- KRAB PF01352.27 42 ZNF565-205 - 90 5.6e-24 83.5 0.0 1 1 4e-28 7.2e-24 83.2 0.0 1 42 5 46 5 46 0.99 KRAB box # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF565-205.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF565-205.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF565-205.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF565-205.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF565-205.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:09:14 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF565-206.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF565-206.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF565-206.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF565-206.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF565-206.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:09:14 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF565-207.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF565-207.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF565-207.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF565-207.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF565-207.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:09:15 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZNF566-201 - 419 3e-67 220.3 63.7 1 9 2.8 1.9e+03 -0.4 0.1 15 26 114 131 107 131 0.75 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF566-201 - 419 3e-67 220.3 63.7 2 9 4.1e-08 2.8e-05 24.3 2.4 5 26 190 211 187 211 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF566-201 - 419 3e-67 220.3 63.7 3 9 2.7e-09 1.8e-06 28.1 5.5 2 24 215 237 214 239 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF566-201 - 419 3e-67 220.3 63.7 4 9 2.1e-12 1.5e-09 37.9 1.4 1 26 242 267 242 267 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF566-201 - 419 3e-67 220.3 63.7 5 9 4.7e-13 3.3e-10 39.9 1.0 1 26 270 295 270 295 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF566-201 - 419 3e-67 220.3 63.7 6 9 3.9e-11 2.7e-08 33.9 0.4 1 25 298 322 298 323 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF566-201 - 419 3e-67 220.3 63.7 7 9 1.6e-11 1.1e-08 35.1 0.8 2 25 327 350 326 351 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF566-201 - 419 3e-67 220.3 63.7 8 9 1.7e-12 1.2e-09 38.2 0.2 1 25 354 378 354 379 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF566-201 - 419 3e-67 220.3 63.7 9 9 4.1e-07 0.00029 21.1 0.6 2 25 383 406 382 407 0.92 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZNF566-201 - 419 1.7e-40 135.2 64.1 1 10 1.6 1.1e+03 0.4 0.4 1 11 114 130 114 132 0.81 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF566-201 - 419 1.7e-40 135.2 64.1 2 10 1 7e+02 1.0 0.3 8 23 179 194 172 194 0.92 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF566-201 - 419 1.7e-40 135.2 64.1 3 10 5.9e-08 4.1e-05 23.8 4.7 1 23 200 222 200 222 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF566-201 - 419 1.7e-40 135.2 64.1 4 10 3.3e-05 0.023 15.1 3.3 1 23 228 250 228 250 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF566-201 - 419 1.7e-40 135.2 64.1 5 10 8.9e-09 6.2e-06 26.4 0.7 1 23 256 278 256 278 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF566-201 - 419 1.7e-40 135.2 64.1 6 10 2.6e-08 1.8e-05 24.9 0.5 1 23 284 306 284 306 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF566-201 - 419 1.7e-40 135.2 64.1 7 10 1.7e-08 1.2e-05 25.5 0.3 1 23 312 334 312 334 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF566-201 - 419 1.7e-40 135.2 64.1 8 10 4.1e-08 2.8e-05 24.3 0.5 1 23 340 362 340 362 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF566-201 - 419 1.7e-40 135.2 64.1 9 10 1.6e-08 1.1e-05 25.6 1.0 1 23 368 390 368 390 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF566-201 - 419 1.7e-40 135.2 64.1 10 10 0.027 19 6.0 0.0 5 21 400 416 399 417 0.92 Zinc finger, C2H2 type KRAB PF01352.27 42 ZNF566-201 - 419 2.9e-23 81.2 3.2 1 1 9.9e-26 6.9e-23 80.0 3.2 1 41 5 45 5 45 0.98 KRAB box zf-C2H2_4 PF13894.6 24 ZNF566-201 - 419 4.6e-23 79.9 59.3 1 8 5.5e-05 0.038 14.8 3.7 1 23 200 222 200 223 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF566-201 - 419 4.6e-23 79.9 59.3 2 8 4.1e-05 0.028 15.2 2.6 1 23 228 250 228 251 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF566-201 - 419 4.6e-23 79.9 59.3 3 8 8.3e-06 0.0057 17.4 0.6 1 23 256 278 256 279 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF566-201 - 419 4.6e-23 79.9 59.3 4 8 1.7e-05 0.012 16.4 0.5 1 23 284 306 284 307 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF566-201 - 419 4.6e-23 79.9 59.3 5 8 1.7e-05 0.012 16.4 0.3 1 23 312 334 312 335 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF566-201 - 419 4.6e-23 79.9 59.3 6 8 1.6e-05 0.011 16.5 0.4 1 23 340 362 340 363 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF566-201 - 419 4.6e-23 79.9 59.3 7 8 1.4e-05 0.0098 16.7 0.9 1 23 368 390 368 391 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF566-201 - 419 4.6e-23 79.9 59.3 8 8 0.2 1.4e+02 3.8 0.0 5 20 400 415 399 417 0.83 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF566-201 - 419 9.5e-17 60.6 55.2 1 9 1.8 1.3e+03 -0.4 0.1 6 13 124 131 124 132 0.86 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF566-201 - 419 9.5e-17 60.6 55.2 2 9 0.00011 0.073 13.1 0.8 2 12 200 210 200 220 0.95 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF566-201 - 419 9.5e-17 60.6 55.2 3 9 0.00071 0.49 10.4 2.1 2 12 228 238 228 251 0.77 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF566-201 - 419 9.5e-17 60.6 55.2 4 9 1.2e-05 0.0086 16.1 1.0 2 20 256 274 256 280 0.84 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF566-201 - 419 9.5e-17 60.6 55.2 5 9 1.2e-05 0.0079 16.2 1.3 2 21 284 303 284 308 0.85 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF566-201 - 419 9.5e-17 60.6 55.2 6 9 0.0009 0.62 10.1 0.6 2 21 312 331 312 336 0.81 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF566-201 - 419 9.5e-17 60.6 55.2 7 9 1.3e-06 0.00092 19.1 0.4 2 24 340 362 340 365 0.91 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF566-201 - 419 9.5e-17 60.6 55.2 8 9 0.0021 1.5 9.0 0.9 2 20 368 386 368 393 0.76 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF566-201 - 419 9.5e-17 60.6 55.2 9 9 2.2 1.5e+03 -0.7 0.1 6 13 400 407 399 407 0.88 C2H2-type zinc finger zf-C2H2_jaz PF12171.8 27 ZNF566-201 - 419 1.5e-12 47.4 36.4 1 10 0.11 79 3.7 0.1 6 14 124 132 124 133 0.89 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF566-201 - 419 1.5e-12 47.4 36.4 2 10 7.1 4.9e+03 -2.0 0.1 9 21 179 191 178 191 0.87 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF566-201 - 419 1.5e-12 47.4 36.4 3 10 0.0081 5.6 7.4 0.3 2 21 200 219 199 220 0.82 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF566-201 - 419 1.5e-12 47.4 36.4 4 10 0.0046 3.1 8.2 0.3 2 12 228 238 227 246 0.85 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF566-201 - 419 1.5e-12 47.4 36.4 5 10 0.00018 0.12 12.7 0.0 2 22 256 276 255 276 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF566-201 - 419 1.5e-12 47.4 36.4 6 10 6.4e-05 0.044 14.1 0.1 2 22 284 304 283 304 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF566-201 - 419 1.5e-12 47.4 36.4 7 10 0.17 1.1e+02 3.2 0.2 2 22 312 332 311 332 0.90 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF566-201 - 419 1.5e-12 47.4 36.4 8 10 0.00019 0.13 12.6 0.0 2 22 340 360 339 360 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF566-201 - 419 1.5e-12 47.4 36.4 9 10 0.0091 6.3 7.2 0.1 2 20 368 386 367 386 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF566-201 - 419 1.5e-12 47.4 36.4 10 10 3.3 2.3e+03 -1.0 0.1 7 22 401 416 400 416 0.80 Zinc-finger double-stranded RNA-binding Zn-ribbon_8 PF09723.10 40 ZNF566-201 - 419 5.5e-07 29.6 46.3 1 7 0.00011 0.079 13.1 5.9 6 34 200 235 199 247 0.94 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF566-201 - 419 5.5e-07 29.6 46.3 2 7 0.0022 1.5 9.0 7.3 6 34 228 263 227 266 0.90 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF566-201 - 419 5.5e-07 29.6 46.3 3 7 2.1e-05 0.015 15.4 5.4 6 34 256 291 255 295 0.92 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF566-201 - 419 5.5e-07 29.6 46.3 4 7 3.6e-05 0.025 14.7 5.5 6 34 284 319 283 323 0.92 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF566-201 - 419 5.5e-07 29.6 46.3 5 7 0.00018 0.12 12.5 6.4 6 35 312 348 310 351 0.91 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF566-201 - 419 5.5e-07 29.6 46.3 6 7 0.0004 0.27 11.4 4.0 6 35 340 376 338 380 0.92 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF566-201 - 419 5.5e-07 29.6 46.3 7 7 2.5 1.7e+03 -0.8 0.2 4 16 396 406 396 414 0.72 Zinc ribbon domain # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF566-201.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF566-201.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF566-201.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF566-201.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF566-201.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:09:15 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZNF566-202 - 418 2.9e-67 220.3 63.7 1 9 2.7 1.9e+03 -0.4 0.1 15 26 113 130 106 130 0.75 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF566-202 - 418 2.9e-67 220.3 63.7 2 9 4.1e-08 2.8e-05 24.3 2.4 5 26 189 210 186 210 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF566-202 - 418 2.9e-67 220.3 63.7 3 9 2.6e-09 1.8e-06 28.1 5.5 2 24 214 236 213 238 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF566-202 - 418 2.9e-67 220.3 63.7 4 9 2.1e-12 1.5e-09 37.9 1.4 1 26 241 266 241 266 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF566-202 - 418 2.9e-67 220.3 63.7 5 9 4.7e-13 3.2e-10 39.9 1.0 1 26 269 294 269 294 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF566-202 - 418 2.9e-67 220.3 63.7 6 9 3.9e-11 2.7e-08 33.9 0.4 1 25 297 321 297 322 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF566-202 - 418 2.9e-67 220.3 63.7 7 9 1.6e-11 1.1e-08 35.1 0.8 2 25 326 349 325 350 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF566-202 - 418 2.9e-67 220.3 63.7 8 9 1.7e-12 1.2e-09 38.2 0.2 1 25 353 377 353 378 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF566-202 - 418 2.9e-67 220.3 63.7 9 9 4.1e-07 0.00029 21.1 0.6 2 25 382 405 381 406 0.92 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZNF566-202 - 418 1.7e-40 135.3 64.1 1 10 1.6 1.1e+03 0.4 0.4 1 11 113 129 113 131 0.81 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF566-202 - 418 1.7e-40 135.3 64.1 2 10 1 7e+02 1.0 0.3 8 23 178 193 171 193 0.92 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF566-202 - 418 1.7e-40 135.3 64.1 3 10 5.9e-08 4.1e-05 23.8 4.7 1 23 199 221 199 221 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF566-202 - 418 1.7e-40 135.3 64.1 4 10 3.3e-05 0.023 15.1 3.3 1 23 227 249 227 249 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF566-202 - 418 1.7e-40 135.3 64.1 5 10 8.9e-09 6.1e-06 26.4 0.7 1 23 255 277 255 277 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF566-202 - 418 1.7e-40 135.3 64.1 6 10 2.6e-08 1.8e-05 24.9 0.5 1 23 283 305 283 305 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF566-202 - 418 1.7e-40 135.3 64.1 7 10 1.7e-08 1.2e-05 25.5 0.3 1 23 311 333 311 333 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF566-202 - 418 1.7e-40 135.3 64.1 8 10 4.1e-08 2.8e-05 24.3 0.5 1 23 339 361 339 361 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF566-202 - 418 1.7e-40 135.3 64.1 9 10 1.6e-08 1.1e-05 25.6 1.0 1 23 367 389 367 389 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF566-202 - 418 1.7e-40 135.3 64.1 10 10 0.027 19 6.0 0.0 5 21 399 415 398 416 0.92 Zinc finger, C2H2 type KRAB PF01352.27 42 ZNF566-202 - 418 1.7e-24 85.2 2.0 1 1 5.3e-27 3.6e-24 84.1 2.0 1 42 5 46 5 46 0.99 KRAB box zf-C2H2_4 PF13894.6 24 ZNF566-202 - 418 4.8e-23 79.9 59.3 1 8 5.5e-05 0.038 14.8 3.7 1 23 199 221 199 222 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF566-202 - 418 4.8e-23 79.9 59.3 2 8 4.1e-05 0.028 15.2 2.6 1 23 227 249 227 250 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF566-202 - 418 4.8e-23 79.9 59.3 3 8 8.3e-06 0.0057 17.4 0.6 1 23 255 277 255 278 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF566-202 - 418 4.8e-23 79.9 59.3 4 8 1.7e-05 0.012 16.4 0.5 1 23 283 305 283 306 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF566-202 - 418 4.8e-23 79.9 59.3 5 8 1.7e-05 0.012 16.4 0.3 1 23 311 333 311 334 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF566-202 - 418 4.8e-23 79.9 59.3 6 8 1.6e-05 0.011 16.5 0.4 1 23 339 361 339 362 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF566-202 - 418 4.8e-23 79.9 59.3 7 8 1.4e-05 0.0097 16.7 0.9 1 23 367 389 367 390 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF566-202 - 418 4.8e-23 79.9 59.3 8 8 0.2 1.3e+02 3.8 0.0 5 20 399 414 398 416 0.83 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF566-202 - 418 1.1e-16 60.3 55.2 1 9 1.8 1.3e+03 -0.4 0.1 6 13 123 130 123 131 0.86 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF566-202 - 418 1.1e-16 60.3 55.2 2 9 0.00011 0.073 13.1 0.8 2 12 199 209 199 219 0.95 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF566-202 - 418 1.1e-16 60.3 55.2 3 9 0.00071 0.49 10.5 2.1 2 12 227 237 227 250 0.77 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF566-202 - 418 1.1e-16 60.3 55.2 4 9 1.2e-05 0.0086 16.1 1.0 2 20 255 273 255 279 0.84 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF566-202 - 418 1.1e-16 60.3 55.2 5 9 1.1e-05 0.0079 16.2 1.3 2 21 283 302 283 307 0.85 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF566-202 - 418 1.1e-16 60.3 55.2 6 9 0.0009 0.62 10.1 0.6 2 21 311 330 311 335 0.81 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF566-202 - 418 1.1e-16 60.3 55.2 7 9 1.3e-06 0.00092 19.2 0.4 2 24 339 361 339 364 0.91 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF566-202 - 418 1.1e-16 60.3 55.2 8 9 0.0021 1.4 9.0 0.9 2 20 367 385 367 392 0.76 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF566-202 - 418 1.1e-16 60.3 55.2 9 9 2.2 1.5e+03 -0.7 0.1 6 13 399 406 398 406 0.88 C2H2-type zinc finger zf-C2H2_jaz PF12171.8 27 ZNF566-202 - 418 1.5e-12 47.5 36.4 1 10 0.11 79 3.7 0.1 6 14 123 131 123 132 0.89 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF566-202 - 418 1.5e-12 47.5 36.4 2 10 7.1 4.9e+03 -2.0 0.1 9 21 178 190 177 190 0.87 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF566-202 - 418 1.5e-12 47.5 36.4 3 10 0.0081 5.6 7.4 0.3 2 21 199 218 198 219 0.82 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF566-202 - 418 1.5e-12 47.5 36.4 4 10 0.0045 3.1 8.2 0.3 2 12 227 237 226 245 0.85 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF566-202 - 418 1.5e-12 47.5 36.4 5 10 0.00018 0.12 12.7 0.0 2 22 255 275 254 275 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF566-202 - 418 1.5e-12 47.5 36.4 6 10 6.4e-05 0.044 14.1 0.1 2 22 283 303 282 303 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF566-202 - 418 1.5e-12 47.5 36.4 7 10 0.17 1.1e+02 3.2 0.2 2 22 311 331 310 331 0.90 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF566-202 - 418 1.5e-12 47.5 36.4 8 10 0.00019 0.13 12.6 0.0 2 22 339 359 338 359 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF566-202 - 418 1.5e-12 47.5 36.4 9 10 0.0091 6.3 7.2 0.1 2 20 367 385 366 385 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF566-202 - 418 1.5e-12 47.5 36.4 10 10 3.3 2.3e+03 -0.9 0.1 7 22 400 415 399 415 0.80 Zinc-finger double-stranded RNA-binding Zn-ribbon_8 PF09723.10 40 ZNF566-202 - 418 5.4e-07 29.6 46.3 1 7 0.00011 0.078 13.1 5.9 6 34 199 234 198 246 0.94 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF566-202 - 418 5.4e-07 29.6 46.3 2 7 0.0022 1.5 9.0 7.3 6 34 227 262 226 265 0.90 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF566-202 - 418 5.4e-07 29.6 46.3 3 7 2.1e-05 0.015 15.4 5.4 6 34 255 290 254 294 0.92 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF566-202 - 418 5.4e-07 29.6 46.3 4 7 3.6e-05 0.025 14.7 5.5 6 34 283 318 282 322 0.92 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF566-202 - 418 5.4e-07 29.6 46.3 5 7 0.00017 0.12 12.5 6.4 6 35 311 347 309 350 0.91 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF566-202 - 418 5.4e-07 29.6 46.3 6 7 0.0004 0.27 11.4 4.0 6 35 339 375 337 379 0.92 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF566-202 - 418 5.4e-07 29.6 46.3 7 7 2.5 1.7e+03 -0.8 0.2 4 16 395 405 395 413 0.72 Zinc ribbon domain # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF566-202.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF566-202.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF566-202.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF566-202.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF566-202.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:09:16 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF566-203.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF566-203.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF566-203.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF566-203.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF566-203.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:09:16 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZNF566-204 - 418 2.9e-67 220.3 63.7 1 9 2.7 1.9e+03 -0.4 0.1 15 26 113 130 106 130 0.75 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF566-204 - 418 2.9e-67 220.3 63.7 2 9 4.1e-08 2.8e-05 24.3 2.4 5 26 189 210 186 210 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF566-204 - 418 2.9e-67 220.3 63.7 3 9 2.6e-09 1.8e-06 28.1 5.5 2 24 214 236 213 238 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF566-204 - 418 2.9e-67 220.3 63.7 4 9 2.1e-12 1.5e-09 37.9 1.4 1 26 241 266 241 266 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF566-204 - 418 2.9e-67 220.3 63.7 5 9 4.7e-13 3.2e-10 39.9 1.0 1 26 269 294 269 294 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF566-204 - 418 2.9e-67 220.3 63.7 6 9 3.9e-11 2.7e-08 33.9 0.4 1 25 297 321 297 322 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF566-204 - 418 2.9e-67 220.3 63.7 7 9 1.6e-11 1.1e-08 35.1 0.8 2 25 326 349 325 350 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF566-204 - 418 2.9e-67 220.3 63.7 8 9 1.7e-12 1.2e-09 38.2 0.2 1 25 353 377 353 378 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF566-204 - 418 2.9e-67 220.3 63.7 9 9 4.1e-07 0.00029 21.1 0.6 2 25 382 405 381 406 0.92 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZNF566-204 - 418 1.7e-40 135.3 64.1 1 10 1.6 1.1e+03 0.4 0.4 1 11 113 129 113 131 0.81 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF566-204 - 418 1.7e-40 135.3 64.1 2 10 1 7e+02 1.0 0.3 8 23 178 193 171 193 0.92 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF566-204 - 418 1.7e-40 135.3 64.1 3 10 5.9e-08 4.1e-05 23.8 4.7 1 23 199 221 199 221 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF566-204 - 418 1.7e-40 135.3 64.1 4 10 3.3e-05 0.023 15.1 3.3 1 23 227 249 227 249 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF566-204 - 418 1.7e-40 135.3 64.1 5 10 8.9e-09 6.1e-06 26.4 0.7 1 23 255 277 255 277 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF566-204 - 418 1.7e-40 135.3 64.1 6 10 2.6e-08 1.8e-05 24.9 0.5 1 23 283 305 283 305 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF566-204 - 418 1.7e-40 135.3 64.1 7 10 1.7e-08 1.2e-05 25.5 0.3 1 23 311 333 311 333 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF566-204 - 418 1.7e-40 135.3 64.1 8 10 4.1e-08 2.8e-05 24.3 0.5 1 23 339 361 339 361 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF566-204 - 418 1.7e-40 135.3 64.1 9 10 1.6e-08 1.1e-05 25.6 1.0 1 23 367 389 367 389 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF566-204 - 418 1.7e-40 135.3 64.1 10 10 0.027 19 6.0 0.0 5 21 399 415 398 416 0.92 Zinc finger, C2H2 type KRAB PF01352.27 42 ZNF566-204 - 418 1.7e-24 85.2 2.0 1 1 5.3e-27 3.6e-24 84.1 2.0 1 42 5 46 5 46 0.99 KRAB box zf-C2H2_4 PF13894.6 24 ZNF566-204 - 418 4.8e-23 79.9 59.3 1 8 5.5e-05 0.038 14.8 3.7 1 23 199 221 199 222 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF566-204 - 418 4.8e-23 79.9 59.3 2 8 4.1e-05 0.028 15.2 2.6 1 23 227 249 227 250 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF566-204 - 418 4.8e-23 79.9 59.3 3 8 8.3e-06 0.0057 17.4 0.6 1 23 255 277 255 278 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF566-204 - 418 4.8e-23 79.9 59.3 4 8 1.7e-05 0.012 16.4 0.5 1 23 283 305 283 306 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF566-204 - 418 4.8e-23 79.9 59.3 5 8 1.7e-05 0.012 16.4 0.3 1 23 311 333 311 334 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF566-204 - 418 4.8e-23 79.9 59.3 6 8 1.6e-05 0.011 16.5 0.4 1 23 339 361 339 362 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF566-204 - 418 4.8e-23 79.9 59.3 7 8 1.4e-05 0.0097 16.7 0.9 1 23 367 389 367 390 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF566-204 - 418 4.8e-23 79.9 59.3 8 8 0.2 1.3e+02 3.8 0.0 5 20 399 414 398 416 0.83 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF566-204 - 418 1.1e-16 60.3 55.2 1 9 1.8 1.3e+03 -0.4 0.1 6 13 123 130 123 131 0.86 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF566-204 - 418 1.1e-16 60.3 55.2 2 9 0.00011 0.073 13.1 0.8 2 12 199 209 199 219 0.95 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF566-204 - 418 1.1e-16 60.3 55.2 3 9 0.00071 0.49 10.5 2.1 2 12 227 237 227 250 0.77 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF566-204 - 418 1.1e-16 60.3 55.2 4 9 1.2e-05 0.0086 16.1 1.0 2 20 255 273 255 279 0.84 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF566-204 - 418 1.1e-16 60.3 55.2 5 9 1.1e-05 0.0079 16.2 1.3 2 21 283 302 283 307 0.85 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF566-204 - 418 1.1e-16 60.3 55.2 6 9 0.0009 0.62 10.1 0.6 2 21 311 330 311 335 0.81 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF566-204 - 418 1.1e-16 60.3 55.2 7 9 1.3e-06 0.00092 19.2 0.4 2 24 339 361 339 364 0.91 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF566-204 - 418 1.1e-16 60.3 55.2 8 9 0.0021 1.4 9.0 0.9 2 20 367 385 367 392 0.76 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF566-204 - 418 1.1e-16 60.3 55.2 9 9 2.2 1.5e+03 -0.7 0.1 6 13 399 406 398 406 0.88 C2H2-type zinc finger zf-C2H2_jaz PF12171.8 27 ZNF566-204 - 418 1.5e-12 47.5 36.4 1 10 0.11 79 3.7 0.1 6 14 123 131 123 132 0.89 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF566-204 - 418 1.5e-12 47.5 36.4 2 10 7.1 4.9e+03 -2.0 0.1 9 21 178 190 177 190 0.87 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF566-204 - 418 1.5e-12 47.5 36.4 3 10 0.0081 5.6 7.4 0.3 2 21 199 218 198 219 0.82 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF566-204 - 418 1.5e-12 47.5 36.4 4 10 0.0045 3.1 8.2 0.3 2 12 227 237 226 245 0.85 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF566-204 - 418 1.5e-12 47.5 36.4 5 10 0.00018 0.12 12.7 0.0 2 22 255 275 254 275 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF566-204 - 418 1.5e-12 47.5 36.4 6 10 6.4e-05 0.044 14.1 0.1 2 22 283 303 282 303 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF566-204 - 418 1.5e-12 47.5 36.4 7 10 0.17 1.1e+02 3.2 0.2 2 22 311 331 310 331 0.90 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF566-204 - 418 1.5e-12 47.5 36.4 8 10 0.00019 0.13 12.6 0.0 2 22 339 359 338 359 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF566-204 - 418 1.5e-12 47.5 36.4 9 10 0.0091 6.3 7.2 0.1 2 20 367 385 366 385 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF566-204 - 418 1.5e-12 47.5 36.4 10 10 3.3 2.3e+03 -0.9 0.1 7 22 400 415 399 415 0.80 Zinc-finger double-stranded RNA-binding Zn-ribbon_8 PF09723.10 40 ZNF566-204 - 418 5.4e-07 29.6 46.3 1 7 0.00011 0.078 13.1 5.9 6 34 199 234 198 246 0.94 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF566-204 - 418 5.4e-07 29.6 46.3 2 7 0.0022 1.5 9.0 7.3 6 34 227 262 226 265 0.90 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF566-204 - 418 5.4e-07 29.6 46.3 3 7 2.1e-05 0.015 15.4 5.4 6 34 255 290 254 294 0.92 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF566-204 - 418 5.4e-07 29.6 46.3 4 7 3.6e-05 0.025 14.7 5.5 6 34 283 318 282 322 0.92 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF566-204 - 418 5.4e-07 29.6 46.3 5 7 0.00017 0.12 12.5 6.4 6 35 311 347 309 350 0.91 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF566-204 - 418 5.4e-07 29.6 46.3 6 7 0.0004 0.27 11.4 4.0 6 35 339 375 337 379 0.92 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF566-204 - 418 5.4e-07 29.6 46.3 7 7 2.5 1.7e+03 -0.8 0.2 4 16 395 405 395 413 0.72 Zinc ribbon domain # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF566-204.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF566-204.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF566-204.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF566-204.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF566-204.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:09:16 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF566-205.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF566-205.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF566-205.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF566-205.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF566-205.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:09:17 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- KRAB PF01352.27 42 ZNF566-206 - 51 4.1e-26 90.3 2.0 1 1 2.6e-30 4.7e-26 90.2 2.0 1 42 5 46 5 46 0.99 KRAB box # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF566-206.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF566-206.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF566-206.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF566-206.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF566-206.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:09:17 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF566-207.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF566-207.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF566-207.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF566-207.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF566-207.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:09:18 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- KRAB PF01352.27 42 ZNF566-208 - 51 4.1e-26 90.3 2.0 1 1 2.6e-30 4.7e-26 90.2 2.0 1 42 5 46 5 46 0.99 KRAB box # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF566-208.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF566-208.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF566-208.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF566-208.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF566-208.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:09:18 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZNF566-209 - 314 1.5e-68 224.3 63.9 1 9 2.7 1.5e+03 -0.1 0.2 15 26 9 26 3 26 0.75 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF566-209 - 314 1.5e-68 224.3 63.9 2 9 3.6e-08 2e-05 24.8 2.4 5 26 85 106 82 106 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF566-209 - 314 1.5e-68 224.3 63.9 3 9 2.3e-09 1.3e-06 28.6 5.5 2 24 110 132 109 134 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF566-209 - 314 1.5e-68 224.3 63.9 4 9 1.9e-12 1e-09 38.4 1.4 1 26 137 162 137 162 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF566-209 - 314 1.5e-68 224.3 63.9 5 9 4.1e-13 2.3e-10 40.4 1.0 1 26 165 190 165 190 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF566-209 - 314 1.5e-68 224.3 63.9 6 9 3.5e-11 1.9e-08 34.4 0.4 1 25 193 217 193 218 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF566-209 - 314 1.5e-68 224.3 63.9 7 9 1.4e-11 7.7e-09 35.6 0.8 2 25 222 245 221 246 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF566-209 - 314 1.5e-68 224.3 63.9 8 9 1.5e-12 8e-10 38.7 0.2 1 25 249 273 249 274 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF566-209 - 314 1.5e-68 224.3 63.9 9 9 3.7e-07 0.0002 21.6 0.6 2 25 278 301 277 302 0.92 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZNF566-209 - 314 7.7e-42 139.5 64.4 1 10 1.4 7.6e+02 0.9 0.4 1 11 9 25 9 27 0.82 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF566-209 - 314 7.7e-42 139.5 64.4 2 10 0.93 5.1e+02 1.5 0.3 8 23 74 89 66 89 0.92 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF566-209 - 314 7.7e-42 139.5 64.4 3 10 5.2e-08 2.8e-05 24.3 4.7 1 23 95 117 95 117 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF566-209 - 314 7.7e-42 139.5 64.4 4 10 2.9e-05 0.016 15.6 3.3 1 23 123 145 123 145 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF566-209 - 314 7.7e-42 139.5 64.4 5 10 7.9e-09 4.3e-06 26.9 0.7 1 23 151 173 151 173 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF566-209 - 314 7.7e-42 139.5 64.4 6 10 2.3e-08 1.3e-05 25.4 0.5 1 23 179 201 179 201 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF566-209 - 314 7.7e-42 139.5 64.4 7 10 1.5e-08 8.3e-06 26.0 0.3 1 23 207 229 207 229 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF566-209 - 314 7.7e-42 139.5 64.4 8 10 3.6e-08 2e-05 24.8 0.5 1 23 235 257 235 257 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF566-209 - 314 7.7e-42 139.5 64.4 9 10 1.4e-08 7.7e-06 26.1 1.0 1 23 263 285 263 285 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF566-209 - 314 7.7e-42 139.5 64.4 10 10 0.024 13 6.4 0.0 5 21 295 311 294 312 0.92 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZNF566-209 - 314 1.3e-24 84.7 58.7 1 8 4.9e-05 0.026 15.3 3.7 1 23 95 117 95 118 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF566-209 - 314 1.3e-24 84.7 58.7 2 8 3.6e-05 0.02 15.7 2.6 1 23 123 145 123 146 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF566-209 - 314 1.3e-24 84.7 58.7 3 8 7.3e-06 0.004 17.9 0.6 1 23 151 173 151 174 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF566-209 - 314 1.3e-24 84.7 58.7 4 8 1.5e-05 0.0083 16.9 0.5 1 23 179 201 179 202 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF566-209 - 314 1.3e-24 84.7 58.7 5 8 1.5e-05 0.0081 16.9 0.3 1 23 207 229 207 230 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF566-209 - 314 1.3e-24 84.7 58.7 6 8 1.4e-05 0.0077 17.0 0.4 1 23 235 257 235 258 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF566-209 - 314 1.3e-24 84.7 58.7 7 8 1.2e-05 0.0068 17.2 0.9 1 23 263 285 263 286 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF566-209 - 314 1.3e-24 84.7 58.7 8 8 0.18 95 4.3 0.0 5 20 295 310 294 312 0.83 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF566-209 - 314 3.2e-18 65.2 54.3 1 9 1.7 9.2e+02 0.0 0.1 6 13 19 26 19 27 0.86 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF566-209 - 314 3.2e-18 65.2 54.3 2 9 9.6e-05 0.052 13.6 0.8 2 12 95 105 95 115 0.95 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF566-209 - 314 3.2e-18 65.2 54.3 3 9 0.00065 0.35 10.9 2.1 2 12 123 133 123 146 0.77 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF566-209 - 314 3.2e-18 65.2 54.3 4 9 1.1e-05 0.0061 16.5 1.0 2 20 151 169 151 175 0.84 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF566-209 - 314 3.2e-18 65.2 54.3 5 9 1e-05 0.0056 16.7 1.3 2 21 179 198 179 203 0.85 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF566-209 - 314 3.2e-18 65.2 54.3 6 9 0.00081 0.44 10.6 0.6 2 21 207 226 207 231 0.81 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF566-209 - 314 3.2e-18 65.2 54.3 7 9 1.2e-06 0.00064 19.6 0.4 2 24 235 257 235 260 0.91 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF566-209 - 314 3.2e-18 65.2 54.3 8 9 0.0019 1 9.4 0.9 2 20 263 281 263 288 0.76 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF566-209 - 314 3.2e-18 65.2 54.3 9 9 1.9 1e+03 -0.2 0.0 6 13 295 302 294 303 0.89 C2H2-type zinc finger zf-C2H2_jaz PF12171.8 27 ZNF566-209 - 314 6.9e-14 51.7 36.4 1 10 0.11 57 4.2 0.1 6 14 19 27 19 28 0.89 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF566-209 - 314 6.9e-14 51.7 36.4 2 10 6.4 3.5e+03 -1.5 0.1 9 21 74 86 73 86 0.87 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF566-209 - 314 6.9e-14 51.7 36.4 3 10 0.0072 3.9 7.9 0.3 2 21 95 114 94 115 0.82 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF566-209 - 314 6.9e-14 51.7 36.4 4 10 0.0041 2.2 8.6 0.3 2 12 123 133 122 141 0.85 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF566-209 - 314 6.9e-14 51.7 36.4 5 10 0.00016 0.086 13.1 0.0 2 22 151 171 150 171 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF566-209 - 314 6.9e-14 51.7 36.4 6 10 5.7e-05 0.031 14.6 0.1 2 22 179 199 178 199 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF566-209 - 314 6.9e-14 51.7 36.4 7 10 0.15 80 3.7 0.2 2 22 207 227 206 227 0.90 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF566-209 - 314 6.9e-14 51.7 36.4 8 10 0.00017 0.093 13.0 0.0 2 22 235 255 234 255 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF566-209 - 314 6.9e-14 51.7 36.4 9 10 0.0082 4.4 7.7 0.1 2 20 263 281 262 281 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF566-209 - 314 6.9e-14 51.7 36.4 10 10 3 1.6e+03 -0.5 0.1 7 22 296 311 295 311 0.80 Zinc-finger double-stranded RNA-binding Zn-ribbon_8 PF09723.10 40 ZNF566-209 - 314 2.6e-07 30.6 48.2 1 7 5.8e-05 0.032 14.4 5.1 6 34 95 130 94 133 0.93 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF566-209 - 314 2.6e-07 30.6 48.2 2 7 0.0018 0.96 9.6 7.3 6 34 123 158 122 162 0.90 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF566-209 - 314 2.6e-07 30.6 48.2 3 7 1.7e-05 0.0093 16.1 5.3 6 34 151 186 150 190 0.92 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF566-209 - 314 2.6e-07 30.6 48.2 4 7 3.3e-05 0.018 15.1 5.7 6 35 179 215 178 220 0.91 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF566-209 - 314 2.6e-07 30.6 48.2 5 7 0.0002 0.11 12.7 6.6 6 35 207 243 206 245 0.91 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF566-209 - 314 2.6e-07 30.6 48.2 6 7 0.00037 0.2 11.8 4.2 6 35 235 271 233 275 0.92 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF566-209 - 314 2.6e-07 30.6 48.2 7 7 2.2 1.2e+03 -0.3 0.2 4 16 291 301 291 309 0.72 Zinc ribbon domain zf_UBZ PF18439.1 32 ZNF566-209 - 314 1e-06 28.2 36.9 1 8 0.00075 0.4 10.3 1.1 3 20 95 112 93 113 0.92 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF566-209 - 314 1e-06 28.2 36.9 2 8 0.02 11 5.7 1.0 3 16 123 137 121 142 0.76 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF566-209 - 314 1e-06 28.2 36.9 3 8 0.0055 3 7.5 0.1 3 15 151 163 149 170 0.78 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF566-209 - 314 1e-06 28.2 36.9 4 8 0.0018 0.97 9.1 0.2 3 21 179 198 177 198 0.88 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF566-209 - 314 1e-06 28.2 36.9 5 8 0.0073 4 7.1 0.3 3 20 207 225 205 226 0.85 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF566-209 - 314 1e-06 28.2 36.9 6 8 0.062 34 4.2 0.2 3 20 235 253 233 254 0.79 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF566-209 - 314 1e-06 28.2 36.9 7 8 0.015 7.9 6.2 0.3 3 20 263 281 261 282 0.90 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF566-209 - 314 1e-06 28.2 36.9 8 8 1.3 7e+02 -0.1 0.0 7 21 295 310 294 310 0.84 Ubiquitin-Binding Zinc Finger # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF566-209.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF566-209.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF566-209.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF566-209.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF566-209.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:09:18 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF566-210.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF566-210.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF566-210.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF566-210.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF566-210.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:09:19 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF566-211.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF566-211.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF566-211.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF566-211.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF566-211.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:09:19 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZNF567-201 - 616 2.2e-98 318.7 99.4 1 15 0.0051 3.2 8.4 0.4 12 24 219 231 216 231 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF567-201 - 616 2.2e-98 318.7 99.4 2 15 3.6e-06 0.0023 18.3 0.2 5 25 240 260 237 261 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF567-201 - 616 2.2e-98 318.7 99.4 3 15 1.3e-09 8.3e-07 29.2 0.5 2 24 265 287 264 288 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF567-201 - 616 2.2e-98 318.7 99.4 4 15 2.5e-08 1.5e-05 25.2 0.2 1 24 292 315 292 316 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF567-201 - 616 2.2e-98 318.7 99.4 5 15 1.8e-11 1.1e-08 35.1 1.3 1 25 320 344 320 345 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF567-201 - 616 2.2e-98 318.7 99.4 6 15 8.5e-09 5.2e-06 26.6 1.1 2 24 349 371 348 373 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF567-201 - 616 2.2e-98 318.7 99.4 7 15 1.6e-09 9.8e-07 28.9 0.3 1 25 376 400 376 401 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF567-201 - 616 2.2e-98 318.7 99.4 8 15 2e-06 0.0013 19.1 0.5 4 25 407 428 405 429 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF567-201 - 616 2.2e-98 318.7 99.4 9 15 9.4e-11 5.8e-08 32.8 1.3 2 24 433 455 432 456 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF567-201 - 616 2.2e-98 318.7 99.4 10 15 5.3e-10 3.3e-07 30.4 1.4 2 25 461 484 460 485 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF567-201 - 616 2.2e-98 318.7 99.4 11 15 6.5e-11 4e-08 33.3 0.2 1 25 488 512 488 513 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF567-201 - 616 2.2e-98 318.7 99.4 12 15 2.7e-10 1.7e-07 31.4 0.4 2 25 517 540 516 541 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF567-201 - 616 2.2e-98 318.7 99.4 13 15 4.6e-09 2.8e-06 27.5 5.1 4 25 547 568 544 569 0.90 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF567-201 - 616 2.2e-98 318.7 99.4 14 15 1.9e-10 1.2e-07 31.9 0.3 1 25 572 596 572 597 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF567-201 - 616 2.2e-98 318.7 99.4 15 15 0.09 56 4.4 0.1 1 13 600 612 600 613 0.86 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZNF567-201 - 616 2.1e-85 276.7 120.7 1 15 0.49 3e+02 2.2 0.0 5 20 183 198 182 199 0.87 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF567-201 - 616 2.1e-85 276.7 120.7 2 15 3.1e-06 0.0019 18.6 2.4 1 23 222 244 222 244 0.95 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF567-201 - 616 2.1e-85 276.7 120.7 3 15 7.6e-08 4.7e-05 23.6 2.9 1 23 250 272 250 272 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF567-201 - 616 2.1e-85 276.7 120.7 4 15 5.2e-08 3.2e-05 24.1 0.7 1 23 278 300 278 300 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF567-201 - 616 2.1e-85 276.7 120.7 5 15 3.2e-05 0.02 15.3 3.0 1 23 306 328 306 328 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF567-201 - 616 2.1e-85 276.7 120.7 6 15 1.2e-08 7.6e-06 26.1 1.1 1 23 334 356 334 356 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF567-201 - 616 2.1e-85 276.7 120.7 7 15 8.8e-09 5.5e-06 26.6 2.0 1 23 362 384 362 384 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF567-201 - 616 2.1e-85 276.7 120.7 8 15 1.8e-07 0.00011 22.4 0.5 1 23 390 412 390 412 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF567-201 - 616 2.1e-85 276.7 120.7 9 15 7.1e-09 4.4e-06 26.9 0.8 1 23 418 440 418 440 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF567-201 - 616 2.1e-85 276.7 120.7 10 15 1.7e-07 0.0001 22.5 3.9 1 23 446 468 446 468 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF567-201 - 616 2.1e-85 276.7 120.7 11 15 2.2e-09 1.3e-06 28.5 0.7 1 23 474 496 474 496 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF567-201 - 616 2.1e-85 276.7 120.7 12 15 5.1e-09 3.2e-06 27.3 0.4 1 23 502 524 502 524 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF567-201 - 616 2.1e-85 276.7 120.7 13 15 1.6e-09 9.8e-07 28.9 2.3 1 23 530 552 530 552 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF567-201 - 616 2.1e-85 276.7 120.7 14 15 3.6e-09 2.2e-06 27.8 3.6 1 23 558 580 558 580 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF567-201 - 616 2.1e-85 276.7 120.7 15 15 8.7e-10 5.4e-07 29.7 1.0 1 23 586 608 586 608 0.99 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZNF567-201 - 616 1.3e-48 159.4 110.5 1 15 0.55 3.4e+02 2.5 0.0 5 20 183 198 182 200 0.89 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF567-201 - 616 1.3e-48 159.4 110.5 2 15 0.007 4.3 8.4 2.2 1 23 222 244 222 245 0.80 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF567-201 - 616 1.3e-48 159.4 110.5 3 15 3e-05 0.018 15.8 1.7 1 23 250 272 250 273 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF567-201 - 616 1.3e-48 159.4 110.5 4 15 1.5e-05 0.0091 16.8 0.6 1 23 278 300 278 301 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF567-201 - 616 1.3e-48 159.4 110.5 5 15 0.00055 0.34 11.9 2.1 1 23 306 328 306 329 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF567-201 - 616 1.3e-48 159.4 110.5 6 15 5.8e-05 0.036 14.9 0.7 1 23 334 356 334 357 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF567-201 - 616 1.3e-48 159.4 110.5 7 15 9.4e-06 0.0058 17.4 1.5 1 23 362 384 362 385 0.97 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF567-201 - 616 1.3e-48 159.4 110.5 8 15 1.1e-05 0.0068 17.2 0.4 1 23 390 412 390 413 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF567-201 - 616 1.3e-48 159.4 110.5 9 15 2.4e-06 0.0015 19.2 0.7 1 23 418 440 418 441 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF567-201 - 616 1.3e-48 159.4 110.5 10 15 1.4e-05 0.0084 16.9 2.6 1 23 446 468 446 469 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF567-201 - 616 1.3e-48 159.4 110.5 11 15 2.8e-05 0.018 15.9 0.5 1 23 474 496 474 497 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF567-201 - 616 1.3e-48 159.4 110.5 12 15 3e-05 0.018 15.8 0.5 1 23 502 524 502 525 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF567-201 - 616 1.3e-48 159.4 110.5 13 15 4.3e-07 0.00026 21.5 1.8 1 23 530 552 530 553 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF567-201 - 616 1.3e-48 159.4 110.5 14 15 1.7e-05 0.011 16.5 2.9 1 23 558 580 558 581 0.97 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF567-201 - 616 1.3e-48 159.4 110.5 15 15 3.4e-06 0.0021 18.8 0.9 1 23 586 608 586 609 0.95 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF567-201 - 616 1.5e-23 82.3 109.5 1 14 0.021 13 5.9 3.6 2 11 222 231 221 234 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF567-201 - 616 1.5e-23 82.3 109.5 2 14 0.017 10 6.2 1.4 2 24 250 272 250 275 0.86 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF567-201 - 616 1.5e-23 82.3 109.5 3 14 6.6e-06 0.0041 17.1 0.4 2 24 278 300 278 303 0.95 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF567-201 - 616 1.5e-23 82.3 109.5 4 14 1.3 8.1e+02 0.2 0.7 2 12 306 316 305 330 0.71 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF567-201 - 616 1.5e-23 82.3 109.5 5 14 0.011 6.9 6.8 0.5 2 12 334 344 334 345 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF567-201 - 616 1.5e-23 82.3 109.5 6 14 5.2e-05 0.032 14.2 2.0 2 24 362 384 362 387 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF567-201 - 616 1.5e-23 82.3 109.5 7 14 0.00031 0.19 11.7 0.7 2 24 390 412 390 415 0.77 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF567-201 - 616 1.5e-23 82.3 109.5 8 14 4.1e-05 0.025 14.6 0.7 2 24 418 440 418 443 0.91 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF567-201 - 616 1.5e-23 82.3 109.5 9 14 0.0075 4.6 7.4 1.7 2 24 446 468 445 471 0.85 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF567-201 - 616 1.5e-23 82.3 109.5 10 14 3.5e-05 0.022 14.8 0.8 2 22 474 494 474 498 0.88 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF567-201 - 616 1.5e-23 82.3 109.5 11 14 0.0013 0.79 9.8 0.8 2 12 502 512 502 514 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF567-201 - 616 1.5e-23 82.3 109.5 12 14 0.00063 0.39 10.8 1.8 2 24 530 552 529 555 0.87 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF567-201 - 616 1.5e-23 82.3 109.5 13 14 0.00036 0.22 11.6 2.9 2 24 558 580 558 583 0.95 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF567-201 - 616 1.5e-23 82.3 109.5 14 14 1.3e-06 0.00079 19.4 0.9 2 26 586 610 586 611 0.95 C2H2-type zinc finger Zn-ribbon_8 PF09723.10 40 ZNF567-201 - 616 1.8e-17 63.2 68.3 1 11 0.00051 0.31 11.2 3.4 8 38 224 261 221 263 0.85 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF567-201 - 616 1.8e-17 63.2 68.3 2 11 0.00063 0.39 10.9 2.8 6 35 250 286 248 290 0.87 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF567-201 - 616 1.8e-17 63.2 68.3 3 11 0.085 52 4.1 3.7 6 33 278 312 276 316 0.76 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF567-201 - 616 1.8e-17 63.2 68.3 4 11 0.0025 1.5 9.0 3.7 6 37 306 344 305 346 0.87 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF567-201 - 616 1.8e-17 63.2 68.3 5 11 8.2e-06 0.0051 16.9 2.7 6 35 334 370 332 375 0.91 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF567-201 - 616 1.8e-17 63.2 68.3 6 11 3.9e-05 0.024 14.7 2.3 6 35 362 398 361 403 0.90 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF567-201 - 616 1.8e-17 63.2 68.3 7 11 6.5e-05 0.04 14.0 2.6 6 37 390 428 389 430 0.86 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF567-201 - 616 1.8e-17 63.2 68.3 8 11 1.2e-05 0.0073 16.4 2.4 6 36 418 455 416 458 0.88 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF567-201 - 616 1.8e-17 63.2 68.3 9 11 1.7e-05 0.01 15.9 4.1 6 37 474 512 473 515 0.91 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF567-201 - 616 1.8e-17 63.2 68.3 10 11 2.4e-07 0.00015 21.8 1.4 6 38 502 541 501 543 0.92 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF567-201 - 616 1.8e-17 63.2 68.3 11 11 0.00027 0.17 12.0 4.5 6 34 558 593 557 601 0.90 Zinc ribbon domain zf_UBZ PF18439.1 32 ZNF567-201 - 616 8.8e-08 31.6 65.5 1 14 0.3 1.8e+02 1.8 2.1 3 12 222 231 220 234 0.88 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF567-201 - 616 8.8e-08 31.6 65.5 2 14 0.69 4.3e+02 0.6 0.3 3 11 250 258 248 261 0.84 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF567-201 - 616 8.8e-08 31.6 65.5 3 14 0.016 10 5.8 0.1 3 15 278 290 276 297 0.75 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF567-201 - 616 8.8e-08 31.6 65.5 4 14 2.5 1.6e+03 -1.2 0.1 2 10 305 313 304 317 0.82 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF567-201 - 616 8.8e-08 31.6 65.5 5 14 0.077 48 3.7 0.1 3 12 334 343 332 350 0.87 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF567-201 - 616 8.8e-08 31.6 65.5 6 14 0.0053 3.3 7.4 0.2 3 14 362 373 360 381 0.81 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF567-201 - 616 8.8e-08 31.6 65.5 7 14 0.007 4.3 7.0 0.1 3 14 390 401 388 409 0.83 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF567-201 - 616 8.8e-08 31.6 65.5 8 14 0.0039 2.4 7.8 0.1 3 13 418 428 416 437 0.81 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF567-201 - 616 8.8e-08 31.6 65.5 9 14 0.019 12 5.6 0.1 2 12 445 455 444 461 0.85 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF567-201 - 616 8.8e-08 31.6 65.5 10 14 0.014 8.4 6.1 0.1 3 14 474 485 472 493 0.83 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF567-201 - 616 8.8e-08 31.6 65.5 11 14 0.013 7.8 6.2 0.1 3 13 502 512 500 521 0.82 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF567-201 - 616 8.8e-08 31.6 65.5 12 14 0.0035 2.1 8.0 0.2 2 14 529 541 528 548 0.83 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF567-201 - 616 8.8e-08 31.6 65.5 13 14 0.025 15 5.3 1.2 3 12 558 567 556 573 0.88 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF567-201 - 616 8.8e-08 31.6 65.5 14 14 0.013 8 6.2 0.2 3 13 586 596 584 599 0.90 Ubiquitin-Binding Zinc Finger zinc_ribbon_15 PF17032.5 86 ZNF567-201 - 616 1.8e-07 31.8 63.6 1 7 0.57 3.5e+02 2.0 4.7 38 76 222 260 207 264 0.78 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF567-201 - 616 1.8e-07 31.8 63.6 2 7 0.00067 0.41 11.4 1.3 29 75 269 315 261 321 0.85 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF567-201 - 616 1.8e-07 31.8 63.6 3 7 0.0006 0.37 11.6 1.6 30 79 326 375 316 380 0.83 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF567-201 - 616 1.8e-07 31.8 63.6 4 7 0.00074 0.46 11.3 2.8 35 78 387 430 379 434 0.83 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF567-201 - 616 1.8e-07 31.8 63.6 5 7 0.0014 0.87 10.4 1.9 31 79 439 487 430 489 0.87 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF567-201 - 616 1.8e-07 31.8 63.6 6 7 0.0008 0.49 11.2 2.0 33 77 497 541 492 545 0.84 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF567-201 - 616 1.8e-07 31.8 63.6 7 7 0.0041 2.6 8.9 4.1 29 77 549 597 542 601 0.84 zinc-ribbon family DUF3268 PF11672.8 118 ZNF567-201 - 616 7.8e-07 29.4 51.8 1 10 0.025 15 5.9 2.0 3 39 222 258 220 274 0.88 zinc-finger-containing domain DUF3268 PF11672.8 118 ZNF567-201 - 616 7.8e-07 29.4 51.8 2 10 0.033 21 5.5 0.5 2 41 277 316 276 328 0.87 zinc-finger-containing domain DUF3268 PF11672.8 118 ZNF567-201 - 616 7.8e-07 29.4 51.8 3 10 0.001 0.64 10.4 0.8 2 41 333 372 332 387 0.83 zinc-finger-containing domain DUF3268 PF11672.8 118 ZNF567-201 - 616 7.8e-07 29.4 51.8 4 10 0.00022 0.13 12.6 1.4 2 39 361 398 360 404 0.90 zinc-finger-containing domain DUF3268 PF11672.8 118 ZNF567-201 - 616 7.8e-07 29.4 51.8 5 10 0.00074 0.46 10.8 0.8 2 41 389 428 388 435 0.89 zinc-finger-containing domain DUF3268 PF11672.8 118 ZNF567-201 - 616 7.8e-07 29.4 51.8 6 10 0.0018 1.1 9.6 1.2 3 40 446 483 444 493 0.75 zinc-finger-containing domain DUF3268 PF11672.8 118 ZNF567-201 - 616 7.8e-07 29.4 51.8 7 10 0.00026 0.16 12.3 1.1 2 42 473 513 472 527 0.88 zinc-finger-containing domain DUF3268 PF11672.8 118 ZNF567-201 - 616 7.8e-07 29.4 51.8 8 10 0.0042 2.6 8.4 1.5 2 38 501 537 500 554 0.87 zinc-finger-containing domain DUF3268 PF11672.8 118 ZNF567-201 - 616 7.8e-07 29.4 51.8 9 10 0.0098 6.1 7.2 2.9 3 41 530 568 528 573 0.78 zinc-finger-containing domain DUF3268 PF11672.8 118 ZNF567-201 - 616 7.8e-07 29.4 51.8 10 10 0.0022 1.4 9.3 3.4 2 42 557 597 556 610 0.85 zinc-finger-containing domain # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF567-201.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF567-201.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF567-201.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF567-201.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF567-201.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:09:20 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZNF567-202 - 647 1.1e-97 316.4 100.4 1 15 0.0054 3.3 8.3 0.4 12 24 250 262 247 262 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF567-202 - 647 1.1e-97 316.4 100.4 2 15 3.9e-06 0.0024 18.2 0.2 5 25 271 291 268 292 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF567-202 - 647 1.1e-97 316.4 100.4 3 15 1.4e-09 8.8e-07 29.1 0.5 2 24 296 318 295 319 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF567-202 - 647 1.1e-97 316.4 100.4 4 15 2.6e-08 1.6e-05 25.1 0.2 1 24 323 346 323 347 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF567-202 - 647 1.1e-97 316.4 100.4 5 15 1.9e-11 1.2e-08 35.0 1.3 1 25 351 375 351 376 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF567-202 - 647 1.1e-97 316.4 100.4 6 15 9e-09 5.6e-06 26.6 1.1 2 24 380 402 379 404 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF567-202 - 647 1.1e-97 316.4 100.4 7 15 1.7e-09 1e-06 28.9 0.3 1 25 407 431 407 432 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF567-202 - 647 1.1e-97 316.4 100.4 8 15 2.2e-06 0.0013 19.0 0.5 4 25 438 459 436 460 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF567-202 - 647 1.1e-97 316.4 100.4 9 15 1e-10 6.2e-08 32.7 1.3 2 24 464 486 463 487 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF567-202 - 647 1.1e-97 316.4 100.4 10 15 5.7e-10 3.5e-07 30.4 1.4 2 25 492 515 491 516 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF567-202 - 647 1.1e-97 316.4 100.4 11 15 6.9e-11 4.3e-08 33.2 0.2 1 25 519 543 519 544 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF567-202 - 647 1.1e-97 316.4 100.4 12 15 2.9e-10 1.8e-07 31.3 0.4 2 25 548 571 547 572 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF567-202 - 647 1.1e-97 316.4 100.4 13 15 4.9e-09 3e-06 27.4 5.1 4 25 578 599 575 600 0.90 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF567-202 - 647 1.1e-97 316.4 100.4 14 15 2e-10 1.2e-07 31.8 0.3 1 25 603 627 603 628 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF567-202 - 647 1.1e-97 316.4 100.4 15 15 0.095 59 4.3 0.1 1 13 631 643 631 644 0.86 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZNF567-202 - 647 4.7e-85 275.6 120.7 1 15 0.52 3.2e+02 2.1 0.0 5 20 214 229 213 230 0.87 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF567-202 - 647 4.7e-85 275.6 120.7 2 15 3.2e-06 0.002 18.5 2.4 1 23 253 275 253 275 0.95 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF567-202 - 647 4.7e-85 275.6 120.7 3 15 8e-08 5e-05 23.5 2.9 1 23 281 303 281 303 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF567-202 - 647 4.7e-85 275.6 120.7 4 15 5.5e-08 3.4e-05 24.0 0.7 1 23 309 331 309 331 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF567-202 - 647 4.7e-85 275.6 120.7 5 15 3.4e-05 0.021 15.3 3.0 1 23 337 359 337 359 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF567-202 - 647 4.7e-85 275.6 120.7 6 15 1.3e-08 8e-06 26.0 1.1 1 23 365 387 365 387 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF567-202 - 647 4.7e-85 275.6 120.7 7 15 9.4e-09 5.8e-06 26.5 2.0 1 23 393 415 393 415 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF567-202 - 647 4.7e-85 275.6 120.7 8 15 1.9e-07 0.00012 22.3 0.5 1 23 421 443 421 443 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF567-202 - 647 4.7e-85 275.6 120.7 9 15 7.5e-09 4.6e-06 26.8 0.8 1 23 449 471 449 471 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF567-202 - 647 4.7e-85 275.6 120.7 10 15 1.8e-07 0.00011 22.5 3.9 1 23 477 499 477 499 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF567-202 - 647 4.7e-85 275.6 120.7 11 15 2.3e-09 1.4e-06 28.4 0.7 1 23 505 527 505 527 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF567-202 - 647 4.7e-85 275.6 120.7 12 15 5.4e-09 3.3e-06 27.2 0.4 1 23 533 555 533 555 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF567-202 - 647 4.7e-85 275.6 120.7 13 15 1.7e-09 1e-06 28.8 2.3 1 23 561 583 561 583 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF567-202 - 647 4.7e-85 275.6 120.7 14 15 3.8e-09 2.3e-06 27.7 3.6 1 23 589 611 589 611 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF567-202 - 647 4.7e-85 275.6 120.7 15 15 9.2e-10 5.7e-07 29.6 1.0 1 23 617 639 617 639 0.99 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZNF567-202 - 647 3e-48 158.3 110.5 1 15 0.58 3.6e+02 2.5 0.0 5 20 214 229 213 231 0.89 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF567-202 - 647 3e-48 158.3 110.5 2 15 0.0074 4.6 8.3 2.2 1 23 253 275 253 276 0.80 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF567-202 - 647 3e-48 158.3 110.5 3 15 3.1e-05 0.019 15.7 1.7 1 23 281 303 281 304 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF567-202 - 647 3e-48 158.3 110.5 4 15 1.6e-05 0.0096 16.7 0.6 1 23 309 331 309 332 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF567-202 - 647 3e-48 158.3 110.5 5 15 0.00058 0.36 11.8 2.1 1 23 337 359 337 360 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF567-202 - 647 3e-48 158.3 110.5 6 15 6.1e-05 0.038 14.8 0.7 1 23 365 387 365 388 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF567-202 - 647 3e-48 158.3 110.5 7 15 9.9e-06 0.0061 17.3 1.5 1 23 393 415 393 416 0.97 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF567-202 - 647 3e-48 158.3 110.5 8 15 1.2e-05 0.0072 17.1 0.4 1 23 421 443 421 444 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF567-202 - 647 3e-48 158.3 110.5 9 15 2.6e-06 0.0016 19.1 0.7 1 23 449 471 449 472 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF567-202 - 647 3e-48 158.3 110.5 10 15 1.4e-05 0.009 16.8 2.6 1 23 477 499 477 500 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF567-202 - 647 3e-48 158.3 110.5 11 15 3e-05 0.019 15.8 0.5 1 23 505 527 505 528 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF567-202 - 647 3e-48 158.3 110.5 12 15 3.1e-05 0.019 15.7 0.5 1 23 533 555 533 556 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF567-202 - 647 3e-48 158.3 110.5 13 15 4.5e-07 0.00028 21.5 1.8 1 23 561 583 561 584 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF567-202 - 647 3e-48 158.3 110.5 14 15 1.8e-05 0.011 16.5 2.9 1 23 589 611 589 612 0.97 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF567-202 - 647 3e-48 158.3 110.5 15 15 3.6e-06 0.0022 18.7 0.9 1 23 617 639 617 640 0.95 C2H2-type zinc finger KRAB PF01352.27 42 ZNF567-202 - 647 2.1e-23 81.7 0.4 1 1 8.4e-26 5.2e-23 80.4 0.4 1 42 5 46 5 46 0.99 KRAB box zf-C2H2_6 PF13912.6 27 ZNF567-202 - 647 2.9e-23 81.3 109.3 1 14 0.02 12 6.0 3.4 2 11 253 262 252 264 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF567-202 - 647 2.9e-23 81.3 109.3 2 14 0.018 11 6.2 1.4 2 24 281 303 281 306 0.86 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF567-202 - 647 2.9e-23 81.3 109.3 3 14 7e-06 0.0043 17.0 0.4 2 24 309 331 309 334 0.95 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF567-202 - 647 2.9e-23 81.3 109.3 4 14 1.4 8.5e+02 0.1 0.7 2 12 337 347 336 361 0.71 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF567-202 - 647 2.9e-23 81.3 109.3 5 14 0.012 7.3 6.7 0.5 2 12 365 375 365 376 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF567-202 - 647 2.9e-23 81.3 109.3 6 14 5.5e-05 0.034 14.1 2.0 2 24 393 415 393 418 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF567-202 - 647 2.9e-23 81.3 109.3 7 14 0.00033 0.2 11.7 0.7 2 24 421 443 421 446 0.77 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF567-202 - 647 2.9e-23 81.3 109.3 8 14 4.3e-05 0.027 14.5 0.7 2 24 449 471 449 474 0.91 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF567-202 - 647 2.9e-23 81.3 109.3 9 14 0.0079 4.9 7.3 1.7 2 24 477 499 476 502 0.85 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF567-202 - 647 2.9e-23 81.3 109.3 10 14 3.7e-05 0.023 14.7 0.8 2 22 505 525 505 529 0.88 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF567-202 - 647 2.9e-23 81.3 109.3 11 14 0.0013 0.83 9.7 0.8 2 12 533 543 533 545 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF567-202 - 647 2.9e-23 81.3 109.3 12 14 0.00067 0.41 10.7 1.8 2 24 561 583 560 586 0.87 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF567-202 - 647 2.9e-23 81.3 109.3 13 14 0.00038 0.23 11.5 2.9 2 24 589 611 589 614 0.95 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF567-202 - 647 2.9e-23 81.3 109.3 14 14 1.4e-06 0.00084 19.3 0.9 2 26 617 641 617 642 0.95 C2H2-type zinc finger Zn-ribbon_8 PF09723.10 40 ZNF567-202 - 647 3.2e-17 62.3 68.4 1 10 0.00054 0.33 11.1 3.4 8 38 255 292 250 294 0.86 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF567-202 - 647 3.2e-17 62.3 68.4 2 10 0.081 50 4.1 3.6 6 33 309 343 307 347 0.76 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF567-202 - 647 3.2e-17 62.3 68.4 3 10 0.0021 1.3 9.2 3.5 6 37 337 375 335 378 0.87 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF567-202 - 647 3.2e-17 62.3 68.4 4 10 8.4e-06 0.0052 16.9 2.7 6 35 365 401 364 406 0.91 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF567-202 - 647 3.2e-17 62.3 68.4 5 10 4.8e-05 0.03 14.4 2.5 6 35 393 429 392 434 0.90 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF567-202 - 647 3.2e-17 62.3 68.4 6 10 8e-05 0.049 13.7 2.8 6 37 421 459 420 461 0.86 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF567-202 - 647 3.2e-17 62.3 68.4 7 10 1.4e-05 0.0084 16.2 2.5 6 36 449 486 448 489 0.88 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF567-202 - 647 3.2e-17 62.3 68.4 8 10 1.8e-05 0.011 15.8 4.1 6 37 505 543 504 546 0.91 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF567-202 - 647 3.2e-17 62.3 68.4 9 10 2.6e-07 0.00016 21.7 1.4 6 38 533 572 532 574 0.92 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF567-202 - 647 3.2e-17 62.3 68.4 10 10 0.00031 0.19 11.9 4.6 6 34 589 624 588 632 0.90 Zinc ribbon domain zf_UBZ PF18439.1 32 ZNF567-202 - 647 2.9e-07 30.0 66.2 1 14 0.31 1.9e+02 1.7 2.1 3 12 253 262 251 265 0.88 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF567-202 - 647 2.9e-07 30.0 66.2 2 14 0.73 4.5e+02 0.6 0.3 3 11 281 289 279 292 0.84 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF567-202 - 647 2.9e-07 30.0 66.2 3 14 0.017 11 5.7 0.1 3 15 309 321 307 328 0.75 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF567-202 - 647 2.9e-07 30.0 66.2 4 14 2.7 1.7e+03 -1.3 0.1 2 10 336 344 335 348 0.82 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF567-202 - 647 2.9e-07 30.0 66.2 5 14 0.082 50 3.6 0.1 3 12 365 374 363 381 0.87 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF567-202 - 647 2.9e-07 30.0 66.2 6 14 0.0056 3.5 7.3 0.2 3 14 393 404 391 412 0.81 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF567-202 - 647 2.9e-07 30.0 66.2 7 14 0.0074 4.5 6.9 0.1 3 14 421 432 419 440 0.83 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF567-202 - 647 2.9e-07 30.0 66.2 8 14 0.0042 2.6 7.7 0.1 3 13 449 459 447 468 0.81 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF567-202 - 647 2.9e-07 30.0 66.2 9 14 0.022 14 5.4 0.2 2 12 476 486 475 491 0.85 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF567-202 - 647 2.9e-07 30.0 66.2 10 14 0.014 8.8 6.0 0.1 3 14 505 516 503 524 0.83 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF567-202 - 647 2.9e-07 30.0 66.2 11 14 0.013 8.3 6.1 0.1 3 13 533 543 531 552 0.82 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF567-202 - 647 2.9e-07 30.0 66.2 12 14 0.0036 2.3 7.9 0.2 2 14 560 572 559 579 0.83 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF567-202 - 647 2.9e-07 30.0 66.2 13 14 0.026 16 5.2 1.2 3 12 589 598 587 604 0.88 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF567-202 - 647 2.9e-07 30.0 66.2 14 14 0.014 8.4 6.1 0.2 3 13 617 627 615 630 0.90 Ubiquitin-Binding Zinc Finger zinc_ribbon_15 PF17032.5 86 ZNF567-202 - 647 3.3e-07 30.9 63.9 1 7 0.71 4.4e+02 1.7 5.1 38 76 253 291 211 296 0.83 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF567-202 - 647 3.3e-07 30.9 63.9 2 7 0.00071 0.44 11.3 1.2 30 75 301 346 293 352 0.85 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF567-202 - 647 3.3e-07 30.9 63.9 3 7 0.00062 0.38 11.5 1.6 30 79 357 406 347 411 0.83 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF567-202 - 647 3.3e-07 30.9 63.9 4 7 0.00074 0.46 11.3 2.8 35 78 418 461 408 465 0.83 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF567-202 - 647 3.3e-07 30.9 63.9 5 7 0.0013 0.82 10.5 1.7 32 79 471 518 464 523 0.88 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF567-202 - 647 3.3e-07 30.9 63.9 6 7 0.00087 0.54 11.0 2.0 33 77 528 572 523 576 0.84 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF567-202 - 647 3.3e-07 30.9 63.9 7 7 0.0044 2.7 8.8 4.2 29 77 580 628 572 632 0.84 zinc-ribbon family DUF3268 PF11672.8 118 ZNF567-202 - 647 8.5e-07 29.3 51.4 1 10 0.026 16 5.8 2.0 3 39 253 289 251 303 0.89 zinc-finger-containing domain DUF3268 PF11672.8 118 ZNF567-202 - 647 8.5e-07 29.3 51.4 2 10 0.033 20 5.5 0.4 2 41 308 347 307 363 0.87 zinc-finger-containing domain DUF3268 PF11672.8 118 ZNF567-202 - 647 8.5e-07 29.3 51.4 3 10 0.0011 0.68 10.3 0.8 2 41 364 403 362 419 0.83 zinc-finger-containing domain DUF3268 PF11672.8 118 ZNF567-202 - 647 8.5e-07 29.3 51.4 4 10 0.00075 0.46 10.8 0.8 2 41 420 459 419 468 0.89 zinc-finger-containing domain DUF3268 PF11672.8 118 ZNF567-202 - 647 8.5e-07 29.3 51.4 5 10 0.0075 4.6 7.6 1.2 2 43 448 489 447 502 0.86 zinc-finger-containing domain DUF3268 PF11672.8 118 ZNF567-202 - 647 8.5e-07 29.3 51.4 6 10 0.0018 1.1 9.6 1.1 3 40 477 514 475 525 0.75 zinc-finger-containing domain DUF3268 PF11672.8 118 ZNF567-202 - 647 8.5e-07 29.3 51.4 7 10 0.0003 0.19 12.1 1.2 2 42 504 544 503 555 0.88 zinc-finger-containing domain DUF3268 PF11672.8 118 ZNF567-202 - 647 8.5e-07 29.3 51.4 8 10 0.0044 2.7 8.3 1.6 2 38 532 568 531 585 0.87 zinc-finger-containing domain DUF3268 PF11672.8 118 ZNF567-202 - 647 8.5e-07 29.3 51.4 9 10 0.01 6.4 7.1 2.9 3 41 561 599 559 604 0.78 zinc-finger-containing domain DUF3268 PF11672.8 118 ZNF567-202 - 647 8.5e-07 29.3 51.4 10 10 0.0022 1.3 9.3 3.3 2 42 588 628 587 641 0.85 zinc-finger-containing domain # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF567-202.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF567-202.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF567-202.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF567-202.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF567-202.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:09:20 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZNF567-203 - 616 2.2e-98 318.7 99.4 1 15 0.0051 3.2 8.4 0.4 12 24 219 231 216 231 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF567-203 - 616 2.2e-98 318.7 99.4 2 15 3.6e-06 0.0023 18.3 0.2 5 25 240 260 237 261 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF567-203 - 616 2.2e-98 318.7 99.4 3 15 1.3e-09 8.3e-07 29.2 0.5 2 24 265 287 264 288 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF567-203 - 616 2.2e-98 318.7 99.4 4 15 2.5e-08 1.5e-05 25.2 0.2 1 24 292 315 292 316 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF567-203 - 616 2.2e-98 318.7 99.4 5 15 1.8e-11 1.1e-08 35.1 1.3 1 25 320 344 320 345 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF567-203 - 616 2.2e-98 318.7 99.4 6 15 8.5e-09 5.2e-06 26.6 1.1 2 24 349 371 348 373 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF567-203 - 616 2.2e-98 318.7 99.4 7 15 1.6e-09 9.8e-07 28.9 0.3 1 25 376 400 376 401 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF567-203 - 616 2.2e-98 318.7 99.4 8 15 2e-06 0.0013 19.1 0.5 4 25 407 428 405 429 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF567-203 - 616 2.2e-98 318.7 99.4 9 15 9.4e-11 5.8e-08 32.8 1.3 2 24 433 455 432 456 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF567-203 - 616 2.2e-98 318.7 99.4 10 15 5.3e-10 3.3e-07 30.4 1.4 2 25 461 484 460 485 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF567-203 - 616 2.2e-98 318.7 99.4 11 15 6.5e-11 4e-08 33.3 0.2 1 25 488 512 488 513 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF567-203 - 616 2.2e-98 318.7 99.4 12 15 2.7e-10 1.7e-07 31.4 0.4 2 25 517 540 516 541 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF567-203 - 616 2.2e-98 318.7 99.4 13 15 4.6e-09 2.8e-06 27.5 5.1 4 25 547 568 544 569 0.90 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF567-203 - 616 2.2e-98 318.7 99.4 14 15 1.9e-10 1.2e-07 31.9 0.3 1 25 572 596 572 597 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF567-203 - 616 2.2e-98 318.7 99.4 15 15 0.09 56 4.4 0.1 1 13 600 612 600 613 0.86 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZNF567-203 - 616 2.1e-85 276.7 120.7 1 15 0.49 3e+02 2.2 0.0 5 20 183 198 182 199 0.87 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF567-203 - 616 2.1e-85 276.7 120.7 2 15 3.1e-06 0.0019 18.6 2.4 1 23 222 244 222 244 0.95 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF567-203 - 616 2.1e-85 276.7 120.7 3 15 7.6e-08 4.7e-05 23.6 2.9 1 23 250 272 250 272 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF567-203 - 616 2.1e-85 276.7 120.7 4 15 5.2e-08 3.2e-05 24.1 0.7 1 23 278 300 278 300 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF567-203 - 616 2.1e-85 276.7 120.7 5 15 3.2e-05 0.02 15.3 3.0 1 23 306 328 306 328 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF567-203 - 616 2.1e-85 276.7 120.7 6 15 1.2e-08 7.6e-06 26.1 1.1 1 23 334 356 334 356 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF567-203 - 616 2.1e-85 276.7 120.7 7 15 8.8e-09 5.5e-06 26.6 2.0 1 23 362 384 362 384 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF567-203 - 616 2.1e-85 276.7 120.7 8 15 1.8e-07 0.00011 22.4 0.5 1 23 390 412 390 412 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF567-203 - 616 2.1e-85 276.7 120.7 9 15 7.1e-09 4.4e-06 26.9 0.8 1 23 418 440 418 440 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF567-203 - 616 2.1e-85 276.7 120.7 10 15 1.7e-07 0.0001 22.5 3.9 1 23 446 468 446 468 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF567-203 - 616 2.1e-85 276.7 120.7 11 15 2.2e-09 1.3e-06 28.5 0.7 1 23 474 496 474 496 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF567-203 - 616 2.1e-85 276.7 120.7 12 15 5.1e-09 3.2e-06 27.3 0.4 1 23 502 524 502 524 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF567-203 - 616 2.1e-85 276.7 120.7 13 15 1.6e-09 9.8e-07 28.9 2.3 1 23 530 552 530 552 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF567-203 - 616 2.1e-85 276.7 120.7 14 15 3.6e-09 2.2e-06 27.8 3.6 1 23 558 580 558 580 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF567-203 - 616 2.1e-85 276.7 120.7 15 15 8.7e-10 5.4e-07 29.7 1.0 1 23 586 608 586 608 0.99 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZNF567-203 - 616 1.3e-48 159.4 110.5 1 15 0.55 3.4e+02 2.5 0.0 5 20 183 198 182 200 0.89 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF567-203 - 616 1.3e-48 159.4 110.5 2 15 0.007 4.3 8.4 2.2 1 23 222 244 222 245 0.80 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF567-203 - 616 1.3e-48 159.4 110.5 3 15 3e-05 0.018 15.8 1.7 1 23 250 272 250 273 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF567-203 - 616 1.3e-48 159.4 110.5 4 15 1.5e-05 0.0091 16.8 0.6 1 23 278 300 278 301 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF567-203 - 616 1.3e-48 159.4 110.5 5 15 0.00055 0.34 11.9 2.1 1 23 306 328 306 329 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF567-203 - 616 1.3e-48 159.4 110.5 6 15 5.8e-05 0.036 14.9 0.7 1 23 334 356 334 357 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF567-203 - 616 1.3e-48 159.4 110.5 7 15 9.4e-06 0.0058 17.4 1.5 1 23 362 384 362 385 0.97 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF567-203 - 616 1.3e-48 159.4 110.5 8 15 1.1e-05 0.0068 17.2 0.4 1 23 390 412 390 413 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF567-203 - 616 1.3e-48 159.4 110.5 9 15 2.4e-06 0.0015 19.2 0.7 1 23 418 440 418 441 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF567-203 - 616 1.3e-48 159.4 110.5 10 15 1.4e-05 0.0084 16.9 2.6 1 23 446 468 446 469 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF567-203 - 616 1.3e-48 159.4 110.5 11 15 2.8e-05 0.018 15.9 0.5 1 23 474 496 474 497 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF567-203 - 616 1.3e-48 159.4 110.5 12 15 3e-05 0.018 15.8 0.5 1 23 502 524 502 525 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF567-203 - 616 1.3e-48 159.4 110.5 13 15 4.3e-07 0.00026 21.5 1.8 1 23 530 552 530 553 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF567-203 - 616 1.3e-48 159.4 110.5 14 15 1.7e-05 0.011 16.5 2.9 1 23 558 580 558 581 0.97 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF567-203 - 616 1.3e-48 159.4 110.5 15 15 3.4e-06 0.0021 18.8 0.9 1 23 586 608 586 609 0.95 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF567-203 - 616 1.5e-23 82.3 109.5 1 14 0.021 13 5.9 3.6 2 11 222 231 221 234 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF567-203 - 616 1.5e-23 82.3 109.5 2 14 0.017 10 6.2 1.4 2 24 250 272 250 275 0.86 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF567-203 - 616 1.5e-23 82.3 109.5 3 14 6.6e-06 0.0041 17.1 0.4 2 24 278 300 278 303 0.95 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF567-203 - 616 1.5e-23 82.3 109.5 4 14 1.3 8.1e+02 0.2 0.7 2 12 306 316 305 330 0.71 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF567-203 - 616 1.5e-23 82.3 109.5 5 14 0.011 6.9 6.8 0.5 2 12 334 344 334 345 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF567-203 - 616 1.5e-23 82.3 109.5 6 14 5.2e-05 0.032 14.2 2.0 2 24 362 384 362 387 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF567-203 - 616 1.5e-23 82.3 109.5 7 14 0.00031 0.19 11.7 0.7 2 24 390 412 390 415 0.77 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF567-203 - 616 1.5e-23 82.3 109.5 8 14 4.1e-05 0.025 14.6 0.7 2 24 418 440 418 443 0.91 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF567-203 - 616 1.5e-23 82.3 109.5 9 14 0.0075 4.6 7.4 1.7 2 24 446 468 445 471 0.85 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF567-203 - 616 1.5e-23 82.3 109.5 10 14 3.5e-05 0.022 14.8 0.8 2 22 474 494 474 498 0.88 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF567-203 - 616 1.5e-23 82.3 109.5 11 14 0.0013 0.79 9.8 0.8 2 12 502 512 502 514 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF567-203 - 616 1.5e-23 82.3 109.5 12 14 0.00063 0.39 10.8 1.8 2 24 530 552 529 555 0.87 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF567-203 - 616 1.5e-23 82.3 109.5 13 14 0.00036 0.22 11.6 2.9 2 24 558 580 558 583 0.95 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF567-203 - 616 1.5e-23 82.3 109.5 14 14 1.3e-06 0.00079 19.4 0.9 2 26 586 610 586 611 0.95 C2H2-type zinc finger Zn-ribbon_8 PF09723.10 40 ZNF567-203 - 616 1.8e-17 63.2 68.3 1 11 0.00051 0.31 11.2 3.4 8 38 224 261 221 263 0.85 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF567-203 - 616 1.8e-17 63.2 68.3 2 11 0.00063 0.39 10.9 2.8 6 35 250 286 248 290 0.87 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF567-203 - 616 1.8e-17 63.2 68.3 3 11 0.085 52 4.1 3.7 6 33 278 312 276 316 0.76 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF567-203 - 616 1.8e-17 63.2 68.3 4 11 0.0025 1.5 9.0 3.7 6 37 306 344 305 346 0.87 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF567-203 - 616 1.8e-17 63.2 68.3 5 11 8.2e-06 0.0051 16.9 2.7 6 35 334 370 332 375 0.91 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF567-203 - 616 1.8e-17 63.2 68.3 6 11 3.9e-05 0.024 14.7 2.3 6 35 362 398 361 403 0.90 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF567-203 - 616 1.8e-17 63.2 68.3 7 11 6.5e-05 0.04 14.0 2.6 6 37 390 428 389 430 0.86 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF567-203 - 616 1.8e-17 63.2 68.3 8 11 1.2e-05 0.0073 16.4 2.4 6 36 418 455 416 458 0.88 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF567-203 - 616 1.8e-17 63.2 68.3 9 11 1.7e-05 0.01 15.9 4.1 6 37 474 512 473 515 0.91 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF567-203 - 616 1.8e-17 63.2 68.3 10 11 2.4e-07 0.00015 21.8 1.4 6 38 502 541 501 543 0.92 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF567-203 - 616 1.8e-17 63.2 68.3 11 11 0.00027 0.17 12.0 4.5 6 34 558 593 557 601 0.90 Zinc ribbon domain zf_UBZ PF18439.1 32 ZNF567-203 - 616 8.8e-08 31.6 65.5 1 14 0.3 1.8e+02 1.8 2.1 3 12 222 231 220 234 0.88 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF567-203 - 616 8.8e-08 31.6 65.5 2 14 0.69 4.3e+02 0.6 0.3 3 11 250 258 248 261 0.84 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF567-203 - 616 8.8e-08 31.6 65.5 3 14 0.016 10 5.8 0.1 3 15 278 290 276 297 0.75 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF567-203 - 616 8.8e-08 31.6 65.5 4 14 2.5 1.6e+03 -1.2 0.1 2 10 305 313 304 317 0.82 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF567-203 - 616 8.8e-08 31.6 65.5 5 14 0.077 48 3.7 0.1 3 12 334 343 332 350 0.87 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF567-203 - 616 8.8e-08 31.6 65.5 6 14 0.0053 3.3 7.4 0.2 3 14 362 373 360 381 0.81 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF567-203 - 616 8.8e-08 31.6 65.5 7 14 0.007 4.3 7.0 0.1 3 14 390 401 388 409 0.83 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF567-203 - 616 8.8e-08 31.6 65.5 8 14 0.0039 2.4 7.8 0.1 3 13 418 428 416 437 0.81 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF567-203 - 616 8.8e-08 31.6 65.5 9 14 0.019 12 5.6 0.1 2 12 445 455 444 461 0.85 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF567-203 - 616 8.8e-08 31.6 65.5 10 14 0.014 8.4 6.1 0.1 3 14 474 485 472 493 0.83 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF567-203 - 616 8.8e-08 31.6 65.5 11 14 0.013 7.8 6.2 0.1 3 13 502 512 500 521 0.82 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF567-203 - 616 8.8e-08 31.6 65.5 12 14 0.0035 2.1 8.0 0.2 2 14 529 541 528 548 0.83 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF567-203 - 616 8.8e-08 31.6 65.5 13 14 0.025 15 5.3 1.2 3 12 558 567 556 573 0.88 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF567-203 - 616 8.8e-08 31.6 65.5 14 14 0.013 8 6.2 0.2 3 13 586 596 584 599 0.90 Ubiquitin-Binding Zinc Finger zinc_ribbon_15 PF17032.5 86 ZNF567-203 - 616 1.8e-07 31.8 63.6 1 7 0.57 3.5e+02 2.0 4.7 38 76 222 260 207 264 0.78 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF567-203 - 616 1.8e-07 31.8 63.6 2 7 0.00067 0.41 11.4 1.3 29 75 269 315 261 321 0.85 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF567-203 - 616 1.8e-07 31.8 63.6 3 7 0.0006 0.37 11.6 1.6 30 79 326 375 316 380 0.83 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF567-203 - 616 1.8e-07 31.8 63.6 4 7 0.00074 0.46 11.3 2.8 35 78 387 430 379 434 0.83 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF567-203 - 616 1.8e-07 31.8 63.6 5 7 0.0014 0.87 10.4 1.9 31 79 439 487 430 489 0.87 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF567-203 - 616 1.8e-07 31.8 63.6 6 7 0.0008 0.49 11.2 2.0 33 77 497 541 492 545 0.84 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF567-203 - 616 1.8e-07 31.8 63.6 7 7 0.0041 2.6 8.9 4.1 29 77 549 597 542 601 0.84 zinc-ribbon family DUF3268 PF11672.8 118 ZNF567-203 - 616 7.8e-07 29.4 51.8 1 10 0.025 15 5.9 2.0 3 39 222 258 220 274 0.88 zinc-finger-containing domain DUF3268 PF11672.8 118 ZNF567-203 - 616 7.8e-07 29.4 51.8 2 10 0.033 21 5.5 0.5 2 41 277 316 276 328 0.87 zinc-finger-containing domain DUF3268 PF11672.8 118 ZNF567-203 - 616 7.8e-07 29.4 51.8 3 10 0.001 0.64 10.4 0.8 2 41 333 372 332 387 0.83 zinc-finger-containing domain DUF3268 PF11672.8 118 ZNF567-203 - 616 7.8e-07 29.4 51.8 4 10 0.00022 0.13 12.6 1.4 2 39 361 398 360 404 0.90 zinc-finger-containing domain DUF3268 PF11672.8 118 ZNF567-203 - 616 7.8e-07 29.4 51.8 5 10 0.00074 0.46 10.8 0.8 2 41 389 428 388 435 0.89 zinc-finger-containing domain DUF3268 PF11672.8 118 ZNF567-203 - 616 7.8e-07 29.4 51.8 6 10 0.0018 1.1 9.6 1.2 3 40 446 483 444 493 0.75 zinc-finger-containing domain DUF3268 PF11672.8 118 ZNF567-203 - 616 7.8e-07 29.4 51.8 7 10 0.00026 0.16 12.3 1.1 2 42 473 513 472 527 0.88 zinc-finger-containing domain DUF3268 PF11672.8 118 ZNF567-203 - 616 7.8e-07 29.4 51.8 8 10 0.0042 2.6 8.4 1.5 2 38 501 537 500 554 0.87 zinc-finger-containing domain DUF3268 PF11672.8 118 ZNF567-203 - 616 7.8e-07 29.4 51.8 9 10 0.0098 6.1 7.2 2.9 3 41 530 568 528 573 0.78 zinc-finger-containing domain DUF3268 PF11672.8 118 ZNF567-203 - 616 7.8e-07 29.4 51.8 10 10 0.0022 1.4 9.3 3.4 2 42 557 597 556 610 0.85 zinc-finger-containing domain # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF567-203.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF567-203.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF567-203.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF567-203.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF567-203.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:09:21 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZNF567-204 - 592 1.2e-89 291.1 92.7 1 14 0.0047 3 8.4 0.4 12 24 219 231 216 231 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF567-204 - 592 1.2e-89 291.1 92.7 2 14 3.4e-06 0.0022 18.4 0.2 5 25 240 260 237 261 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF567-204 - 592 1.2e-89 291.1 92.7 3 14 1.2e-09 7.9e-07 29.2 0.5 2 24 265 287 264 288 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF567-204 - 592 1.2e-89 291.1 92.7 4 14 2.3e-08 1.4e-05 25.2 0.2 1 24 292 315 292 316 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF567-204 - 592 1.2e-89 291.1 92.7 5 14 1.6e-11 1e-08 35.2 1.3 1 25 320 344 320 345 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF567-204 - 592 1.2e-89 291.1 92.7 6 14 7.8e-09 5e-06 26.7 1.1 2 24 349 371 348 373 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF567-204 - 592 1.2e-89 291.1 92.7 7 14 1.5e-09 9.3e-07 29.0 0.3 1 25 376 400 376 401 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF567-204 - 592 1.2e-89 291.1 92.7 8 14 1.9e-06 0.0012 19.2 0.5 4 25 407 428 405 429 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF567-204 - 592 1.2e-89 291.1 92.7 9 14 8.7e-11 5.5e-08 32.9 1.3 2 24 433 455 432 456 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF567-204 - 592 1.2e-89 291.1 92.7 10 14 4.9e-10 3.2e-07 30.5 1.4 2 25 461 484 460 485 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF567-204 - 592 1.2e-89 291.1 92.7 11 14 6e-11 3.8e-08 33.4 0.2 1 25 488 512 488 513 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF567-204 - 592 1.2e-89 291.1 92.7 12 14 2.5e-10 1.6e-07 31.4 0.4 2 25 517 540 516 541 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF567-204 - 592 1.2e-89 291.1 92.7 13 14 4.2e-09 2.7e-06 27.5 5.1 4 25 547 568 544 569 0.90 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF567-204 - 592 1.2e-89 291.1 92.7 14 14 0.28 1.8e+02 2.8 0.1 1 11 572 582 572 585 0.84 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZNF567-204 - 592 5.1e-78 253.4 112.7 1 14 0.45 2.9e+02 2.2 0.0 5 20 183 198 182 199 0.87 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF567-204 - 592 5.1e-78 253.4 112.7 2 14 2.8e-06 0.0018 18.6 2.4 1 23 222 244 222 244 0.95 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF567-204 - 592 5.1e-78 253.4 112.7 3 14 7e-08 4.5e-05 23.7 2.9 1 23 250 272 250 272 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF567-204 - 592 5.1e-78 253.4 112.7 4 14 4.8e-08 3.1e-05 24.2 0.7 1 23 278 300 278 300 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF567-204 - 592 5.1e-78 253.4 112.7 5 14 3e-05 0.019 15.4 3.0 1 23 306 328 306 328 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF567-204 - 592 5.1e-78 253.4 112.7 6 14 1.1e-08 7.2e-06 26.2 1.1 1 23 334 356 334 356 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF567-204 - 592 5.1e-78 253.4 112.7 7 14 8.1e-09 5.2e-06 26.6 2.0 1 23 362 384 362 384 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF567-204 - 592 5.1e-78 253.4 112.7 8 14 1.7e-07 0.00011 22.5 0.5 1 23 390 412 390 412 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF567-204 - 592 5.1e-78 253.4 112.7 9 14 6.5e-09 4.2e-06 26.9 0.8 1 23 418 440 418 440 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF567-204 - 592 5.1e-78 253.4 112.7 10 14 1.5e-07 9.8e-05 22.6 3.9 1 23 446 468 446 468 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF567-204 - 592 5.1e-78 253.4 112.7 11 14 2e-09 1.3e-06 28.5 0.7 1 23 474 496 474 496 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF567-204 - 592 5.1e-78 253.4 112.7 12 14 4.7e-09 3e-06 27.4 0.4 1 23 502 524 502 524 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF567-204 - 592 5.1e-78 253.4 112.7 13 14 1.5e-09 9.3e-07 29.0 2.3 1 23 530 552 530 552 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF567-204 - 592 5.1e-78 253.4 112.7 14 14 3.3e-09 2.1e-06 27.9 3.6 1 23 558 580 558 580 0.99 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZNF567-204 - 592 1.3e-44 146.9 102.7 1 14 0.5 3.2e+02 2.6 0.0 5 20 183 198 182 200 0.89 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF567-204 - 592 1.3e-44 146.9 102.7 2 14 0.0065 4.1 8.5 2.2 1 23 222 244 222 245 0.80 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF567-204 - 592 1.3e-44 146.9 102.7 3 14 2.7e-05 0.018 15.9 1.7 1 23 250 272 250 273 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF567-204 - 592 1.3e-44 146.9 102.7 4 14 1.4e-05 0.0087 16.8 0.6 1 23 278 300 278 301 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF567-204 - 592 1.3e-44 146.9 102.7 5 14 0.00051 0.32 11.9 2.1 1 23 306 328 306 329 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF567-204 - 592 1.3e-44 146.9 102.7 6 14 5.3e-05 0.034 15.0 0.7 1 23 334 356 334 357 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF567-204 - 592 1.3e-44 146.9 102.7 7 14 8.6e-06 0.0055 17.4 1.5 1 23 362 384 362 385 0.97 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF567-204 - 592 1.3e-44 146.9 102.7 8 14 1e-05 0.0065 17.2 0.4 1 23 390 412 390 413 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF567-204 - 592 1.3e-44 146.9 102.7 9 14 2.2e-06 0.0014 19.3 0.7 1 23 418 440 418 441 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF567-204 - 592 1.3e-44 146.9 102.7 10 14 1.3e-05 0.0081 16.9 2.6 1 23 446 468 446 469 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF567-204 - 592 1.3e-44 146.9 102.7 11 14 2.6e-05 0.017 15.9 0.5 1 23 474 496 474 497 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF567-204 - 592 1.3e-44 146.9 102.7 12 14 2.7e-05 0.018 15.9 0.5 1 23 502 524 502 525 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF567-204 - 592 1.3e-44 146.9 102.7 13 14 3.9e-07 0.00025 21.6 1.8 1 23 530 552 530 553 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF567-204 - 592 1.3e-44 146.9 102.7 14 14 1.6e-05 0.01 16.6 2.9 1 23 558 580 558 581 0.97 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF567-204 - 592 3e-19 68.5 102.1 1 13 0.019 12 6.0 3.6 2 11 222 231 221 234 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF567-204 - 592 3e-19 68.5 102.1 2 13 0.015 9.9 6.3 1.4 2 24 250 272 250 275 0.86 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF567-204 - 592 3e-19 68.5 102.1 3 13 6.1e-06 0.0039 17.1 0.4 2 24 278 300 278 303 0.95 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF567-204 - 592 3e-19 68.5 102.1 4 13 1.2 7.7e+02 0.3 0.7 2 12 306 316 305 330 0.71 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF567-204 - 592 3e-19 68.5 102.1 5 13 0.01 6.6 6.9 0.5 2 12 334 344 334 345 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF567-204 - 592 3e-19 68.5 102.1 6 13 4.8e-05 0.031 14.3 2.0 2 24 362 384 362 387 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF567-204 - 592 3e-19 68.5 102.1 7 13 0.00029 0.18 11.8 0.7 2 24 390 412 390 415 0.77 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF567-204 - 592 3e-19 68.5 102.1 8 13 3.7e-05 0.024 14.6 0.7 2 24 418 440 418 443 0.91 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF567-204 - 592 3e-19 68.5 102.1 9 13 0.0069 4.4 7.4 1.7 2 24 446 468 445 471 0.85 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF567-204 - 592 3e-19 68.5 102.1 10 13 3.2e-05 0.021 14.8 0.8 2 22 474 494 474 498 0.88 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF567-204 - 592 3e-19 68.5 102.1 11 13 0.0012 0.76 9.9 0.8 2 12 502 512 502 514 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF567-204 - 592 3e-19 68.5 102.1 12 13 0.00058 0.37 10.8 1.8 2 24 530 552 529 555 0.87 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF567-204 - 592 3e-19 68.5 102.1 13 13 0.00051 0.32 11.0 3.2 2 24 558 580 558 582 0.96 C2H2-type zinc finger Zn-ribbon_8 PF09723.10 40 ZNF567-204 - 592 5.2e-15 55.3 66.2 1 11 0.00047 0.3 11.2 3.4 8 38 224 261 221 263 0.85 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF567-204 - 592 5.2e-15 55.3 66.2 2 11 0.072 46 4.2 3.6 6 33 278 312 277 316 0.76 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF567-204 - 592 5.2e-15 55.3 66.2 3 11 0.0021 1.3 9.2 3.6 6 37 306 344 304 346 0.87 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF567-204 - 592 5.2e-15 55.3 66.2 4 11 8.2e-06 0.0052 16.9 2.8 6 35 334 370 333 375 0.91 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF567-204 - 592 5.2e-15 55.3 66.2 5 11 3.7e-05 0.024 14.8 2.4 6 35 362 398 361 404 0.90 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF567-204 - 592 5.2e-15 55.3 66.2 6 11 6.1e-05 0.039 14.1 2.6 6 37 390 428 389 430 0.86 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF567-204 - 592 5.2e-15 55.3 66.2 7 11 1e-05 0.0067 16.5 2.3 6 36 418 455 416 458 0.88 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF567-204 - 592 5.2e-15 55.3 66.2 8 11 1.3e-05 0.0081 16.3 3.8 6 37 474 512 473 515 0.91 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF567-204 - 592 5.2e-15 55.3 66.2 9 11 2.9e-07 0.00019 21.5 1.8 6 38 502 541 501 543 0.92 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF567-204 - 592 5.2e-15 55.3 66.2 10 11 0.0033 2.1 8.5 8.0 6 34 530 565 529 571 0.89 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF567-204 - 592 5.2e-15 55.3 66.2 11 11 0.11 67 3.7 2.3 6 16 558 568 557 582 0.84 Zinc ribbon domain zf_UBZ PF18439.1 32 ZNF567-204 - 592 3.4e-07 29.7 60.2 1 13 0.27 1.8e+02 1.9 2.1 3 12 222 231 220 234 0.88 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF567-204 - 592 3.4e-07 29.7 60.2 2 13 0.64 4.1e+02 0.7 0.3 3 11 250 258 248 261 0.84 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF567-204 - 592 3.4e-07 29.7 60.2 3 13 0.015 9.7 5.9 0.1 3 15 278 290 276 297 0.75 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF567-204 - 592 3.4e-07 29.7 60.2 4 13 2.3 1.5e+03 -1.1 0.1 2 10 305 313 304 318 0.83 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF567-204 - 592 3.4e-07 29.7 60.2 5 13 0.071 46 3.7 0.1 3 12 334 343 332 350 0.87 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF567-204 - 592 3.4e-07 29.7 60.2 6 13 0.0049 3.2 7.4 0.2 3 14 362 373 360 381 0.81 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF567-204 - 592 3.4e-07 29.7 60.2 7 13 0.0064 4.1 7.1 0.1 3 14 390 401 388 409 0.83 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF567-204 - 592 3.4e-07 29.7 60.2 8 13 0.0036 2.3 7.9 0.1 3 13 418 428 416 437 0.81 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF567-204 - 592 3.4e-07 29.7 60.2 9 13 0.018 11 5.7 0.1 2 12 445 455 444 461 0.85 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF567-204 - 592 3.4e-07 29.7 60.2 10 13 0.012 8 6.2 0.1 3 14 474 485 472 493 0.83 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF567-204 - 592 3.4e-07 29.7 60.2 11 13 0.012 7.5 6.2 0.1 3 13 502 512 500 521 0.82 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF567-204 - 592 3.4e-07 29.7 60.2 12 13 0.0032 2 8.1 0.2 2 14 529 541 528 548 0.83 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF567-204 - 592 3.4e-07 29.7 60.2 13 13 0.023 15 5.3 1.2 3 12 558 567 556 573 0.88 Ubiquitin-Binding Zinc Finger # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF567-204.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF567-204.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF567-204.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF567-204.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF567-204.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:09:22 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF567-205.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF567-205.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF567-205.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF567-205.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF567-205.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:09:22 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- KRAB PF01352.27 42 ZNF567-206 - 51 3.4e-25 87.4 0.4 1 1 2.1e-29 3.8e-25 87.3 0.4 1 42 5 46 5 46 0.99 KRAB box # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF567-206.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF567-206.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF567-206.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF567-206.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF567-206.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:09:22 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF567-207.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF567-207.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF567-207.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF567-207.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF567-207.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:09:23 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZNF569-201 - 686 1.1e-155 499.8 117.7 1 20 7.2 6.1e+03 -2.0 0.1 19 26 114 121 113 121 0.86 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF569-201 - 686 1.1e-155 499.8 117.7 2 20 0.00074 0.63 10.6 1.0 8 25 179 196 177 197 0.88 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF569-201 - 686 1.1e-155 499.8 117.7 3 20 4.2e-13 3.6e-10 39.8 0.8 1 26 200 225 200 225 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF569-201 - 686 1.1e-155 499.8 117.7 4 20 7.2e-06 0.0061 16.9 1.3 2 24 229 251 228 253 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF569-201 - 686 1.1e-155 499.8 117.7 5 20 9.2e-12 7.9e-09 35.6 0.4 1 25 256 280 256 281 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF569-201 - 686 1.1e-155 499.8 117.7 6 20 5e-11 4.3e-08 33.2 0.1 1 25 284 308 284 309 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF569-201 - 686 1.1e-155 499.8 117.7 7 20 4.7e-10 4e-07 30.2 0.2 2 24 313 335 312 337 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF569-201 - 686 1.1e-155 499.8 117.7 8 20 1.3e-12 1.1e-09 38.2 0.4 2 25 341 364 340 365 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF569-201 - 686 1.1e-155 499.8 117.7 9 20 9e-11 7.7e-08 32.4 0.1 5 25 372 392 368 393 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF569-201 - 686 1.1e-155 499.8 117.7 10 20 7.8e-13 6.7e-10 38.9 2.0 1 26 396 421 396 421 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF569-201 - 686 1.1e-155 499.8 117.7 11 20 3.4e-09 2.9e-06 27.4 0.6 4 24 427 447 424 449 0.90 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF569-201 - 686 1.1e-155 499.8 117.7 12 20 2.2e-11 1.9e-08 34.4 0.2 1 25 452 476 452 477 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF569-201 - 686 1.1e-155 499.8 117.7 13 20 2.8e-10 2.4e-07 30.9 0.1 1 25 480 504 480 505 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF569-201 - 686 1.1e-155 499.8 117.7 14 20 9.5e-10 8.1e-07 29.2 0.5 4 25 511 532 508 533 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF569-201 - 686 1.1e-155 499.8 117.7 15 20 1.6e-12 1.4e-09 38.0 0.3 2 25 537 560 536 561 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF569-201 - 686 1.1e-155 499.8 117.7 16 20 1.3e-11 1.1e-08 35.1 0.2 2 25 565 588 565 589 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF569-201 - 686 1.1e-155 499.8 117.7 17 20 1.2e-11 9.9e-09 35.2 0.2 2 25 593 616 592 617 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF569-201 - 686 1.1e-155 499.8 117.7 18 20 1.2e-10 1e-07 32.1 0.1 2 25 621 644 620 645 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF569-201 - 686 1.1e-155 499.8 117.7 19 20 2.8e-12 2.4e-09 37.2 1.1 2 25 649 672 648 673 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF569-201 - 686 1.1e-155 499.8 117.7 20 20 0.24 2.1e+02 2.6 2.1 1 10 676 685 676 685 0.94 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZNF569-201 - 686 1.2e-111 359.3 118.9 1 19 9.3 8e+03 -2.3 0.1 5 12 114 121 113 123 0.83 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF569-201 - 686 1.2e-111 359.3 118.9 2 19 1.7e-07 0.00015 22.0 1.4 1 23 186 208 186 208 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF569-201 - 686 1.2e-111 359.3 118.9 3 19 3.5e-06 0.003 17.9 3.2 1 23 214 236 214 236 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF569-201 - 686 1.2e-111 359.3 118.9 4 19 6.6e-09 5.7e-06 26.5 0.4 1 23 242 264 242 264 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF569-201 - 686 1.2e-111 359.3 118.9 5 19 1e-07 8.5e-05 22.8 0.4 1 23 270 292 270 292 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF569-201 - 686 1.2e-111 359.3 118.9 6 19 2.8e-08 2.4e-05 24.5 0.1 1 23 298 320 298 320 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF569-201 - 686 1.2e-111 359.3 118.9 7 19 8.2e-08 7e-05 23.1 0.1 1 23 326 348 326 348 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF569-201 - 686 1.2e-111 359.3 118.9 8 19 3e-08 2.6e-05 24.4 0.3 1 23 354 376 354 376 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF569-201 - 686 1.2e-111 359.3 118.9 9 19 3.7e-10 3.2e-07 30.5 0.2 1 23 382 404 382 404 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF569-201 - 686 1.2e-111 359.3 118.9 10 19 2.1e-06 0.0018 18.6 3.6 1 23 410 432 410 432 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF569-201 - 686 1.2e-111 359.3 118.9 11 19 4.7e-09 4e-06 27.0 0.2 1 23 438 460 438 460 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF569-201 - 686 1.2e-111 359.3 118.9 12 19 1.7e-08 1.4e-05 25.2 0.1 1 23 466 488 466 488 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF569-201 - 686 1.2e-111 359.3 118.9 13 19 4.6e-08 3.9e-05 23.9 0.5 1 23 494 516 494 516 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF569-201 - 686 1.2e-111 359.3 118.9 14 19 3e-07 0.00025 21.3 0.1 1 23 522 544 522 544 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF569-201 - 686 1.2e-111 359.3 118.9 15 19 1.1e-08 9.3e-06 25.8 2.0 1 23 550 572 550 572 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF569-201 - 686 1.2e-111 359.3 118.9 16 19 4.1e-09 3.5e-06 27.1 0.2 1 23 578 600 578 600 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF569-201 - 686 1.2e-111 359.3 118.9 17 19 3.4e-09 2.9e-06 27.4 0.3 1 23 606 628 606 628 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF569-201 - 686 1.2e-111 359.3 118.9 18 19 3.1e-08 2.7e-05 24.4 1.0 1 23 634 656 634 656 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF569-201 - 686 1.2e-111 359.3 118.9 19 19 2.4e-07 0.0002 21.6 3.0 1 23 662 684 662 684 0.93 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZNF569-201 - 686 2.5e-61 199.0 119.5 1 18 4e-06 0.0034 18.1 0.7 1 23 186 208 186 209 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF569-201 - 686 2.5e-61 199.0 119.5 2 18 0.00037 0.32 12.0 2.7 1 23 214 236 214 237 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF569-201 - 686 2.5e-61 199.0 119.5 3 18 8.9e-05 0.076 13.9 0.3 1 23 242 264 242 265 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF569-201 - 686 2.5e-61 199.0 119.5 4 18 8.7e-06 0.0074 17.0 0.4 1 23 270 292 270 293 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF569-201 - 686 2.5e-61 199.0 119.5 5 18 6.3e-06 0.0053 17.5 0.3 1 23 298 320 298 321 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF569-201 - 686 2.5e-61 199.0 119.5 6 18 4.8e-05 0.041 14.7 0.1 1 23 326 348 326 349 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF569-201 - 686 2.5e-61 199.0 119.5 7 18 5e-05 0.043 14.7 0.3 1 23 354 376 354 377 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF569-201 - 686 2.5e-61 199.0 119.5 8 18 1.1e-06 0.00095 19.8 0.3 1 23 382 404 382 405 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF569-201 - 686 2.5e-61 199.0 119.5 9 18 0.00041 0.35 11.8 2.8 1 23 410 432 410 433 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF569-201 - 686 2.5e-61 199.0 119.5 10 18 0.00012 0.1 13.5 0.2 1 23 438 460 438 461 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF569-201 - 686 2.5e-61 199.0 119.5 11 18 4.9e-06 0.0042 17.8 0.2 1 23 466 488 466 489 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF569-201 - 686 2.5e-61 199.0 119.5 12 18 2e-05 0.017 15.9 0.5 1 23 494 516 494 517 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF569-201 - 686 2.5e-61 199.0 119.5 13 18 0.00041 0.35 11.8 0.2 3 23 524 544 522 545 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF569-201 - 686 2.5e-61 199.0 119.5 14 18 7.3e-06 0.0063 17.3 1.9 1 23 550 572 550 573 0.81 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF569-201 - 686 2.5e-61 199.0 119.5 15 18 7.8e-06 0.0067 17.2 0.2 1 23 578 600 578 601 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF569-201 - 686 2.5e-61 199.0 119.5 16 18 5.1e-05 0.043 14.7 0.3 1 23 606 628 606 629 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF569-201 - 686 2.5e-61 199.0 119.5 17 18 5.5e-05 0.047 14.5 0.9 3 23 636 656 634 657 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF569-201 - 686 2.5e-61 199.0 119.5 18 18 6.1e-05 0.052 14.4 2.5 1 23 662 684 662 685 0.95 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF569-201 - 686 6.5e-39 131.2 115.2 1 18 0.015 13 5.9 0.5 2 24 186 208 186 211 0.85 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF569-201 - 686 6.5e-39 131.2 115.2 2 18 0.27 2.3e+02 1.9 2.5 2 20 214 232 214 239 0.76 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF569-201 - 686 6.5e-39 131.2 115.2 3 18 0.00041 0.35 10.9 0.2 2 22 242 262 241 266 0.85 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF569-201 - 686 6.5e-39 131.2 115.2 4 18 0.00096 0.82 9.8 0.7 2 22 270 290 270 294 0.81 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF569-201 - 686 6.5e-39 131.2 115.2 5 18 1.6e-06 0.0014 18.6 0.8 2 24 298 320 298 323 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF569-201 - 686 6.5e-39 131.2 115.2 6 18 6.3e-07 0.00054 19.9 0.1 2 24 326 348 326 351 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF569-201 - 686 6.5e-39 131.2 115.2 7 18 0.0028 2.4 8.3 0.2 2 12 354 364 354 372 0.90 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF569-201 - 686 6.5e-39 131.2 115.2 8 18 7e-07 0.0006 19.7 0.6 2 24 382 404 382 407 0.96 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF569-201 - 686 6.5e-39 131.2 115.2 9 18 0.0065 5.5 7.1 2.9 2 24 410 432 410 435 0.86 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF569-201 - 686 6.5e-39 131.2 115.2 10 18 0.0026 2.2 8.4 0.1 2 11 438 447 438 458 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF569-201 - 686 6.5e-39 131.2 115.2 11 18 8.3e-05 0.071 13.1 0.4 2 24 466 488 466 491 0.90 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF569-201 - 686 6.5e-39 131.2 115.2 12 18 7.2e-05 0.062 13.3 1.1 2 24 494 516 494 519 0.92 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF569-201 - 686 6.5e-39 131.2 115.2 13 18 6.3e-06 0.0054 16.7 0.2 2 24 522 544 522 547 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF569-201 - 686 6.5e-39 131.2 115.2 14 18 0.00028 0.24 11.5 2.3 2 24 550 572 550 575 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF569-201 - 686 6.5e-39 131.2 115.2 15 18 2.2e-05 0.018 15.0 0.2 2 24 578 600 578 603 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF569-201 - 686 6.5e-39 131.2 115.2 16 18 0.0042 3.6 7.7 0.3 2 12 606 616 606 628 0.84 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF569-201 - 686 6.5e-39 131.2 115.2 17 18 3.3e-05 0.028 14.4 0.9 2 24 634 656 634 659 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF569-201 - 686 6.5e-39 131.2 115.2 18 18 0.32 2.7e+02 1.7 0.5 2 12 662 672 662 673 0.88 C2H2-type zinc finger KRAB PF01352.27 42 ZNF569-201 - 686 4.7e-25 87.0 0.1 1 1 1.2e-27 9.8e-25 85.9 0.1 2 42 8 48 7 48 0.98 KRAB box Zn-ribbon_8 PF09723.10 40 ZNF569-201 - 686 1.2e-21 76.5 88.7 1 15 0.0052 4.4 7.5 2.7 6 34 186 221 185 226 0.82 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF569-201 - 686 1.2e-21 76.5 88.7 2 15 0.086 74 3.6 0.6 6 17 214 225 212 234 0.85 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF569-201 - 686 1.2e-21 76.5 88.7 3 15 4.3e-05 0.037 14.2 2.2 6 34 242 277 241 283 0.87 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF569-201 - 686 1.2e-21 76.5 88.7 4 15 1.8e-06 0.0016 18.5 1.7 6 38 298 337 297 339 0.89 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF569-201 - 686 1.2e-21 76.5 88.7 5 15 0.00011 0.095 12.8 4.3 6 35 354 390 353 394 0.87 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF569-201 - 686 1.2e-21 76.5 88.7 6 15 0.0008 0.68 10.1 5.9 6 34 382 417 381 423 0.83 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF569-201 - 686 1.2e-21 76.5 88.7 7 15 0.00045 0.39 10.9 5.4 6 34 410 445 408 450 0.90 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF569-201 - 686 1.2e-21 76.5 88.7 8 15 1.1e-05 0.0096 16.0 1.9 6 35 438 474 436 479 0.90 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF569-201 - 686 1.2e-21 76.5 88.7 9 15 4.5e-05 0.038 14.1 4.4 6 36 494 531 493 535 0.87 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF569-201 - 686 1.2e-21 76.5 88.7 10 15 0.0071 6.1 7.1 0.2 6 20 522 536 521 540 0.87 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF569-201 - 686 1.2e-21 76.5 88.7 11 15 5.9e-05 0.05 13.7 3.6 6 36 550 587 549 591 0.79 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF569-201 - 686 1.2e-21 76.5 88.7 12 15 0.00025 0.21 11.7 3.4 6 34 578 613 577 616 0.80 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF569-201 - 686 1.2e-21 76.5 88.7 13 15 0.00074 0.63 10.2 2.8 6 36 606 643 605 646 0.76 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF569-201 - 686 1.2e-21 76.5 88.7 14 15 0.0013 1.1 9.4 1.8 6 35 634 670 632 675 0.76 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF569-201 - 686 1.2e-21 76.5 88.7 15 15 0.057 48 4.2 0.3 6 16 662 672 660 682 0.83 Zinc ribbon domain zf-C2H2_jaz PF12171.8 27 ZNF569-201 - 686 1.1e-14 54.2 89.9 1 18 3.5 3e+03 -1.3 0.1 7 13 115 121 114 122 0.86 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF569-201 - 686 1.1e-14 54.2 89.9 2 18 0.011 9.5 6.6 0.1 2 21 186 205 185 206 0.84 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF569-201 - 686 1.1e-14 54.2 89.9 3 18 0.017 15 6.0 2.3 2 22 214 234 213 234 0.95 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF569-201 - 686 1.1e-14 54.2 89.9 4 18 0.0018 1.5 9.2 0.3 2 22 242 262 241 262 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF569-201 - 686 1.1e-14 54.2 89.9 5 18 0.0017 1.5 9.2 0.7 2 22 270 290 269 290 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF569-201 - 686 1.1e-14 54.2 89.9 6 18 0.01 8.6 6.8 0.3 2 22 298 318 297 318 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF569-201 - 686 1.1e-14 54.2 89.9 7 18 0.017 15 6.0 0.0 2 24 326 348 325 348 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF569-201 - 686 1.1e-14 54.2 89.9 8 18 0.00032 0.27 11.6 0.1 2 24 382 404 381 404 0.95 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF569-201 - 686 1.1e-14 54.2 89.9 9 18 0.00073 0.62 10.4 2.9 2 22 410 430 409 430 0.95 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF569-201 - 686 1.1e-14 54.2 89.9 10 18 0.0069 5.9 7.3 0.1 2 22 438 458 437 458 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF569-201 - 686 1.1e-14 54.2 89.9 11 18 0.002 1.7 9.0 0.2 2 22 466 486 465 486 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF569-201 - 686 1.1e-14 54.2 89.9 12 18 0.016 13 6.2 1.0 2 22 494 514 493 514 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF569-201 - 686 1.1e-14 54.2 89.9 13 18 0.01 8.9 6.7 0.1 2 24 522 544 521 544 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF569-201 - 686 1.1e-14 54.2 89.9 14 18 3.5 3e+03 -1.3 0.9 2 24 550 572 549 572 0.79 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF569-201 - 686 1.1e-14 54.2 89.9 15 18 0.034 29 5.1 0.0 2 24 578 600 577 600 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF569-201 - 686 1.1e-14 54.2 89.9 16 18 0.12 1e+02 3.3 0.1 2 24 606 628 605 628 0.91 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF569-201 - 686 1.1e-14 54.2 89.9 17 18 1.1 9.6e+02 0.3 0.2 2 22 634 654 633 656 0.87 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF569-201 - 686 1.1e-14 54.2 89.9 18 18 0.06 51 4.3 0.4 4 22 664 682 661 682 0.89 Zinc-finger double-stranded RNA-binding zinc_ribbon_15 PF17032.5 86 ZNF569-201 - 686 3e-14 53.5 75.5 1 10 2.8 2.4e+03 -0.6 0.4 65 75 185 195 148 201 0.59 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF569-201 - 686 3e-14 53.5 75.5 2 10 0.0015 1.3 9.8 7.2 26 75 202 251 186 257 0.87 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF569-201 - 686 3e-14 53.5 75.5 3 10 0.001 0.86 10.4 3.4 30 78 262 310 254 313 0.85 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF569-201 - 686 3e-14 53.5 75.5 4 10 0.00047 0.4 11.5 0.6 30 76 318 364 310 368 0.88 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF569-201 - 686 3e-14 53.5 75.5 5 10 1e-05 0.0085 16.8 2.2 23 81 368 425 361 428 0.84 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF569-201 - 686 3e-14 53.5 75.5 6 10 0.00066 0.56 11.0 2.1 25 79 425 479 424 484 0.88 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF569-201 - 686 3e-14 53.5 75.5 7 10 0.00021 0.18 12.6 2.8 31 81 459 509 452 512 0.84 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF569-201 - 686 3e-14 53.5 75.5 8 10 0.00045 0.38 11.5 1.7 25 76 509 560 505 564 0.92 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF569-201 - 686 3e-14 53.5 75.5 9 10 0.00017 0.15 12.8 1.4 28 78 569 618 557 622 0.80 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF569-201 - 686 3e-14 53.5 75.5 10 10 0.001 0.88 10.4 0.7 35 78 631 674 619 677 0.88 zinc-ribbon family XPA_N PF01286.18 32 ZNF569-201 - 686 3.6e-10 39.7 87.4 1 19 0.91 7.8e+02 0.2 0.1 6 13 114 121 112 123 0.86 XPA protein N-terminal XPA_N PF01286.18 32 ZNF569-201 - 686 3.6e-10 39.7 87.4 2 19 0.098 83 3.3 0.1 3 13 187 197 185 199 0.87 XPA protein N-terminal XPA_N PF01286.18 32 ZNF569-201 - 686 3.6e-10 39.7 87.4 3 19 0.9 7.7e+02 0.3 0.1 3 12 215 224 213 234 0.84 XPA protein N-terminal XPA_N PF01286.18 32 ZNF569-201 - 686 3.6e-10 39.7 87.4 4 19 0.024 20 5.3 0.1 3 11 243 251 242 257 0.91 XPA protein N-terminal XPA_N PF01286.18 32 ZNF569-201 - 686 3.6e-10 39.7 87.4 5 19 0.044 38 4.4 0.2 4 12 272 280 269 288 0.83 XPA protein N-terminal XPA_N PF01286.18 32 ZNF569-201 - 686 3.6e-10 39.7 87.4 6 19 0.02 17 5.6 0.3 3 12 299 308 297 311 0.88 XPA protein N-terminal XPA_N PF01286.18 32 ZNF569-201 - 686 3.6e-10 39.7 87.4 7 19 0.048 41 4.3 0.1 4 12 328 336 325 337 0.88 XPA protein N-terminal XPA_N PF01286.18 32 ZNF569-201 - 686 3.6e-10 39.7 87.4 8 19 0.011 9 6.4 0.2 3 12 355 364 353 368 0.90 XPA protein N-terminal XPA_N PF01286.18 32 ZNF569-201 - 686 3.6e-10 39.7 87.4 9 19 0.0029 2.5 8.2 0.2 3 14 383 394 381 398 0.91 XPA protein N-terminal XPA_N PF01286.18 32 ZNF569-201 - 686 3.6e-10 39.7 87.4 10 19 0.08 68 3.6 0.3 3 12 411 420 409 421 0.88 XPA protein N-terminal XPA_N PF01286.18 32 ZNF569-201 - 686 3.6e-10 39.7 87.4 11 19 0.02 17 5.5 0.1 3 12 439 448 437 454 0.89 XPA protein N-terminal XPA_N PF01286.18 32 ZNF569-201 - 686 3.6e-10 39.7 87.4 12 19 0.015 13 6.0 0.1 3 12 467 476 465 481 0.89 XPA protein N-terminal XPA_N PF01286.18 32 ZNF569-201 - 686 3.6e-10 39.7 87.4 13 19 0.021 18 5.5 0.3 3 12 495 504 493 506 0.88 XPA protein N-terminal XPA_N PF01286.18 32 ZNF569-201 - 686 3.6e-10 39.7 87.4 14 19 0.027 23 5.2 0.2 3 12 523 532 521 533 0.88 XPA protein N-terminal XPA_N PF01286.18 32 ZNF569-201 - 686 3.6e-10 39.7 87.4 15 19 0.0083 7.1 6.8 1.3 3 17 551 565 549 567 0.84 XPA protein N-terminal XPA_N PF01286.18 32 ZNF569-201 - 686 3.6e-10 39.7 87.4 16 19 0.026 22 5.2 0.1 3 12 579 588 577 589 0.87 XPA protein N-terminal XPA_N PF01286.18 32 ZNF569-201 - 686 3.6e-10 39.7 87.4 17 19 0.0092 7.9 6.6 0.3 3 14 607 618 605 622 0.91 XPA protein N-terminal XPA_N PF01286.18 32 ZNF569-201 - 686 3.6e-10 39.7 87.4 18 19 0.11 91 3.2 0.3 3 12 635 644 633 646 0.89 XPA protein N-terminal XPA_N PF01286.18 32 ZNF569-201 - 686 3.6e-10 39.7 87.4 19 19 0.0092 7.8 6.6 0.0 3 12 663 672 661 680 0.83 XPA protein N-terminal zf_UBZ PF18439.1 32 ZNF569-201 - 686 1.1e-09 37.7 81.2 1 19 7.1 6.1e+03 -3.1 0.8 7 20 151 164 151 164 0.92 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF569-201 - 686 1.1e-09 37.7 81.2 2 19 0.15 1.3e+02 2.3 0.0 3 18 186 202 184 205 0.78 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF569-201 - 686 1.1e-09 37.7 81.2 3 19 0.06 52 3.6 0.2 3 17 214 228 212 232 0.86 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF569-201 - 686 1.1e-09 37.7 81.2 4 19 0.024 20 4.9 0.1 2 12 241 251 240 260 0.88 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF569-201 - 686 1.1e-09 37.7 81.2 5 19 0.028 24 4.6 0.3 3 15 270 282 268 289 0.82 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF569-201 - 686 1.1e-09 37.7 81.2 6 19 0.015 13 5.5 0.2 3 16 298 312 296 317 0.78 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF569-201 - 686 1.1e-09 37.7 81.2 7 19 0.02 17 5.1 0.0 3 13 326 336 324 344 0.88 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF569-201 - 686 1.1e-09 37.7 81.2 8 19 0.0025 2.1 8.0 0.1 3 16 354 367 352 369 0.84 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF569-201 - 686 1.1e-09 37.7 81.2 9 19 0.0097 8.3 6.1 0.1 3 16 382 396 380 401 0.81 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF569-201 - 686 1.1e-09 37.7 81.2 10 19 0.052 44 3.8 0.6 3 20 410 428 408 429 0.78 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF569-201 - 686 1.1e-09 37.7 81.2 11 19 0.091 77 3.0 0.1 3 12 438 447 436 456 0.87 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF569-201 - 686 1.1e-09 37.7 81.2 12 19 0.0048 4.1 7.1 0.1 3 15 466 478 464 485 0.78 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF569-201 - 686 1.1e-09 37.7 81.2 13 19 0.017 15 5.3 0.2 3 18 494 510 492 513 0.78 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF569-201 - 686 1.1e-09 37.7 81.2 14 19 0.036 31 4.3 0.1 3 14 522 533 520 540 0.86 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF569-201 - 686 1.1e-09 37.7 81.2 15 19 0.013 11 5.7 0.6 3 13 550 560 548 565 0.87 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF569-201 - 686 1.1e-09 37.7 81.2 16 19 0.011 9.6 5.9 0.1 3 14 578 589 576 596 0.87 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF569-201 - 686 1.1e-09 37.7 81.2 17 19 0.016 14 5.4 0.1 3 15 606 618 604 624 0.83 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF569-201 - 686 1.1e-09 37.7 81.2 18 19 0.014 12 5.6 0.1 3 14 634 645 632 652 0.85 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF569-201 - 686 1.1e-09 37.7 81.2 19 19 0.25 2.2e+02 1.6 0.1 3 14 662 673 660 680 0.85 Ubiquitin-Binding Zinc Finger zf-C2HE PF16278.5 64 ZNF569-201 - 686 1.3e-09 38.3 103.4 1 18 4.7 4e+03 -1.6 0.1 39 52 111 124 87 125 0.75 C2HE / C2H2 / C2HC zinc-binding finger zf-C2HE PF16278.5 64 ZNF569-201 - 686 1.3e-09 38.3 103.4 2 18 2.3e-05 0.019 15.4 0.7 35 61 183 208 159 211 0.84 C2HE / C2H2 / C2HC zinc-binding finger zf-C2HE PF16278.5 64 ZNF569-201 - 686 1.3e-09 38.3 103.4 3 18 0.54 4.6e+02 1.4 1.5 36 61 212 236 210 239 0.82 C2HE / C2H2 / C2HC zinc-binding finger zf-C2HE PF16278.5 64 ZNF569-201 - 686 1.3e-09 38.3 103.4 4 18 0.0056 4.8 7.7 2.7 33 57 237 260 225 267 0.80 C2HE / C2H2 / C2HC zinc-binding finger zf-C2HE PF16278.5 64 ZNF569-201 - 686 1.3e-09 38.3 103.4 5 18 1.1 9.6e+02 0.3 0.7 36 50 268 282 264 293 0.79 C2HE / C2H2 / C2HC zinc-binding finger zf-C2HE PF16278.5 64 ZNF569-201 - 686 1.3e-09 38.3 103.4 6 18 0.051 44 4.6 0.7 35 57 295 316 285 323 0.74 C2HE / C2H2 / C2HC zinc-binding finger zf-C2HE PF16278.5 64 ZNF569-201 - 686 1.3e-09 38.3 103.4 7 18 0.0053 4.6 7.8 0.1 35 62 323 349 315 351 0.88 C2HE / C2H2 / C2HC zinc-binding finger zf-C2HE PF16278.5 64 ZNF569-201 - 686 1.3e-09 38.3 103.4 8 18 0.0032 2.7 8.5 0.1 36 61 352 376 349 379 0.90 C2HE / C2H2 / C2HC zinc-binding finger zf-C2HE PF16278.5 64 ZNF569-201 - 686 1.3e-09 38.3 103.4 9 18 0.016 14 6.2 0.1 36 61 380 404 377 407 0.85 C2HE / C2H2 / C2HC zinc-binding finger zf-C2HE PF16278.5 64 ZNF569-201 - 686 1.3e-09 38.3 103.4 10 18 0.054 46 4.6 5.0 32 57 432 456 402 463 0.80 C2HE / C2H2 / C2HC zinc-binding finger zf-C2HE PF16278.5 64 ZNF569-201 - 686 1.3e-09 38.3 103.4 11 18 0.67 5.8e+02 1.0 0.3 35 50 463 477 457 489 0.76 C2HE / C2H2 / C2HC zinc-binding finger zf-C2HE PF16278.5 64 ZNF569-201 - 686 1.3e-09 38.3 103.4 12 18 0.12 1.1e+02 3.4 1.2 35 49 491 505 474 516 0.81 C2HE / C2H2 / C2HC zinc-binding finger zf-C2HE PF16278.5 64 ZNF569-201 - 686 1.3e-09 38.3 103.4 13 18 8.3e-05 0.071 13.6 0.3 35 62 519 545 506 547 0.89 C2HE / C2H2 / C2HC zinc-binding finger zf-C2HE PF16278.5 64 ZNF569-201 - 686 1.3e-09 38.3 103.4 14 18 0.22 1.9e+02 2.6 1.4 36 61 548 572 545 575 0.88 C2HE / C2H2 / C2HC zinc-binding finger zf-C2HE PF16278.5 64 ZNF569-201 - 686 1.3e-09 38.3 103.4 15 18 0.051 44 4.6 0.1 35 61 575 600 570 603 0.77 C2HE / C2H2 / C2HC zinc-binding finger zf-C2HE PF16278.5 64 ZNF569-201 - 686 1.3e-09 38.3 103.4 16 18 0.0095 8.1 7.0 0.1 36 61 604 628 601 631 0.84 C2HE / C2H2 / C2HC zinc-binding finger zf-C2HE PF16278.5 64 ZNF569-201 - 686 1.3e-09 38.3 103.4 17 18 0.0009 0.77 10.3 0.5 36 62 632 657 629 659 0.92 C2HE / C2H2 / C2HC zinc-binding finger zf-C2HE PF16278.5 64 ZNF569-201 - 686 1.3e-09 38.3 103.4 18 18 0.3 2.6e+02 2.2 0.4 36 49 660 673 657 682 0.74 C2HE / C2H2 / C2HC zinc-binding finger zf-C2H2_11 PF16622.5 29 ZNF569-201 - 686 1.3e-08 34.4 86.8 1 18 0.00037 0.31 10.8 0.3 5 26 186 207 184 208 0.94 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF569-201 - 686 1.3e-08 34.4 86.8 2 18 1.6 1.4e+03 -0.9 0.3 7 26 216 235 213 236 0.85 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF569-201 - 686 1.3e-08 34.4 86.8 3 18 0.0035 3 7.7 0.3 3 26 240 263 239 264 0.89 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF569-201 - 686 1.3e-08 34.4 86.8 4 18 8.3 7.1e+03 -3.1 0.2 7 15 272 280 270 285 0.77 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF569-201 - 686 1.3e-08 34.4 86.8 5 18 0.023 19 5.1 0.1 6 23 299 316 296 320 0.87 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF569-201 - 686 1.3e-08 34.4 86.8 6 18 0.032 28 4.6 0.0 7 25 328 346 325 347 0.93 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF569-201 - 686 1.3e-08 34.4 86.8 7 18 0.01 8.5 6.2 0.1 5 26 354 375 351 376 0.90 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF569-201 - 686 1.3e-08 34.4 86.8 8 18 0.0062 5.3 6.9 0.1 6 25 383 402 380 403 0.92 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF569-201 - 686 1.3e-08 34.4 86.8 9 18 7.2 6.1e+03 -2.9 0.3 7 14 412 419 410 421 0.70 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF569-201 - 686 1.3e-08 34.4 86.8 10 18 0.053 45 3.9 0.1 6 26 439 459 436 460 0.88 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF569-201 - 686 1.3e-08 34.4 86.8 11 18 0.27 2.3e+02 1.7 0.1 7 17 468 478 466 487 0.79 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF569-201 - 686 1.3e-08 34.4 86.8 12 18 0.38 3.2e+02 1.2 0.2 6 15 495 504 493 507 0.86 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF569-201 - 686 1.3e-08 34.4 86.8 13 18 0.0032 2.8 7.8 0.1 7 25 524 542 521 543 0.93 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF569-201 - 686 1.3e-08 34.4 86.8 14 18 0.099 85 3.0 1.0 6 25 551 570 548 571 0.85 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF569-201 - 686 1.3e-08 34.4 86.8 15 18 0.0068 5.8 6.8 0.1 7 25 580 598 578 598 0.93 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF569-201 - 686 1.3e-08 34.4 86.8 16 18 0.01 8.5 6.2 0.2 6 24 607 625 604 626 0.89 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF569-201 - 686 1.3e-08 34.4 86.8 17 18 0.0039 3.3 7.5 0.4 7 25 636 654 633 654 0.94 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF569-201 - 686 1.3e-08 34.4 86.8 18 18 0.0023 1.9 8.3 2.4 6 26 663 683 660 686 0.92 zinc-finger C2H2-type zf_C2H2_13 PF18508.1 42 ZNF569-201 - 686 4.4e-07 29.4 56.1 1 16 0.058 49 3.6 0.2 20 39 188 208 186 210 0.76 Zinc finger domain zf_C2H2_13 PF18508.1 42 ZNF569-201 - 686 4.4e-07 29.4 56.1 2 16 0.019 16 5.2 0.1 20 38 244 263 227 266 0.85 Zinc finger domain zf_C2H2_13 PF18508.1 42 ZNF569-201 - 686 4.4e-07 29.4 56.1 3 16 1.8 1.5e+03 -1.2 0.2 20 39 272 292 271 293 0.78 Zinc finger domain zf_C2H2_13 PF18508.1 42 ZNF569-201 - 686 4.4e-07 29.4 56.1 4 16 0.018 15 5.2 0.1 20 39 300 320 299 322 0.80 Zinc finger domain zf_C2H2_13 PF18508.1 42 ZNF569-201 - 686 4.4e-07 29.4 56.1 5 16 0.097 83 2.9 0.0 20 26 328 334 326 349 0.77 Zinc finger domain zf_C2H2_13 PF18508.1 42 ZNF569-201 - 686 4.4e-07 29.4 56.1 6 16 0.12 1e+02 2.6 0.1 20 36 356 373 354 377 0.69 Zinc finger domain zf_C2H2_13 PF18508.1 42 ZNF569-201 - 686 4.4e-07 29.4 56.1 7 16 0.026 23 4.7 0.0 20 39 384 404 383 406 0.75 Zinc finger domain zf_C2H2_13 PF18508.1 42 ZNF569-201 - 686 4.4e-07 29.4 56.1 8 16 0.028 24 4.6 0.1 20 38 440 459 439 462 0.80 Zinc finger domain zf_C2H2_13 PF18508.1 42 ZNF569-201 - 686 4.4e-07 29.4 56.1 9 16 0.02 17 5.1 0.1 19 35 467 484 465 489 0.76 Zinc finger domain zf_C2H2_13 PF18508.1 42 ZNF569-201 - 686 4.4e-07 29.4 56.1 10 16 0.11 94 2.7 0.1 20 27 496 503 495 516 0.83 Zinc finger domain zf_C2H2_13 PF18508.1 42 ZNF569-201 - 686 4.4e-07 29.4 56.1 11 16 0.026 22 4.7 0.1 20 39 524 544 523 546 0.81 Zinc finger domain zf_C2H2_13 PF18508.1 42 ZNF569-201 - 686 4.4e-07 29.4 56.1 12 16 0.16 1.3e+02 2.2 0.3 20 33 552 565 551 573 0.75 Zinc finger domain zf_C2H2_13 PF18508.1 42 ZNF569-201 - 686 4.4e-07 29.4 56.1 13 16 0.0032 2.8 7.6 0.0 19 39 579 600 577 601 0.77 Zinc finger domain zf_C2H2_13 PF18508.1 42 ZNF569-201 - 686 4.4e-07 29.4 56.1 14 16 0.024 21 4.8 0.1 20 29 608 617 607 629 0.72 Zinc finger domain zf_C2H2_13 PF18508.1 42 ZNF569-201 - 686 4.4e-07 29.4 56.1 15 16 0.14 1.2e+02 2.4 0.1 20 39 636 656 636 658 0.80 Zinc finger domain zf_C2H2_13 PF18508.1 42 ZNF569-201 - 686 4.4e-07 29.4 56.1 16 16 2.1 1.8e+03 -1.4 0.2 20 31 664 675 663 684 0.71 Zinc finger domain # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF569-201.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF569-201.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF569-201.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF569-201.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF569-201.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:09:23 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZNF569-202 - 686 1.1e-155 499.8 117.7 1 20 7.2 6.1e+03 -2.0 0.1 19 26 114 121 113 121 0.86 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF569-202 - 686 1.1e-155 499.8 117.7 2 20 0.00074 0.63 10.6 1.0 8 25 179 196 177 197 0.88 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF569-202 - 686 1.1e-155 499.8 117.7 3 20 4.2e-13 3.6e-10 39.8 0.8 1 26 200 225 200 225 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF569-202 - 686 1.1e-155 499.8 117.7 4 20 7.2e-06 0.0061 16.9 1.3 2 24 229 251 228 253 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF569-202 - 686 1.1e-155 499.8 117.7 5 20 9.2e-12 7.9e-09 35.6 0.4 1 25 256 280 256 281 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF569-202 - 686 1.1e-155 499.8 117.7 6 20 5e-11 4.3e-08 33.2 0.1 1 25 284 308 284 309 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF569-202 - 686 1.1e-155 499.8 117.7 7 20 4.7e-10 4e-07 30.2 0.2 2 24 313 335 312 337 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF569-202 - 686 1.1e-155 499.8 117.7 8 20 1.3e-12 1.1e-09 38.2 0.4 2 25 341 364 340 365 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF569-202 - 686 1.1e-155 499.8 117.7 9 20 9e-11 7.7e-08 32.4 0.1 5 25 372 392 368 393 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF569-202 - 686 1.1e-155 499.8 117.7 10 20 7.8e-13 6.7e-10 38.9 2.0 1 26 396 421 396 421 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF569-202 - 686 1.1e-155 499.8 117.7 11 20 3.4e-09 2.9e-06 27.4 0.6 4 24 427 447 424 449 0.90 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF569-202 - 686 1.1e-155 499.8 117.7 12 20 2.2e-11 1.9e-08 34.4 0.2 1 25 452 476 452 477 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF569-202 - 686 1.1e-155 499.8 117.7 13 20 2.8e-10 2.4e-07 30.9 0.1 1 25 480 504 480 505 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF569-202 - 686 1.1e-155 499.8 117.7 14 20 9.5e-10 8.1e-07 29.2 0.5 4 25 511 532 508 533 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF569-202 - 686 1.1e-155 499.8 117.7 15 20 1.6e-12 1.4e-09 38.0 0.3 2 25 537 560 536 561 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF569-202 - 686 1.1e-155 499.8 117.7 16 20 1.3e-11 1.1e-08 35.1 0.2 2 25 565 588 565 589 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF569-202 - 686 1.1e-155 499.8 117.7 17 20 1.2e-11 9.9e-09 35.2 0.2 2 25 593 616 592 617 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF569-202 - 686 1.1e-155 499.8 117.7 18 20 1.2e-10 1e-07 32.1 0.1 2 25 621 644 620 645 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF569-202 - 686 1.1e-155 499.8 117.7 19 20 2.8e-12 2.4e-09 37.2 1.1 2 25 649 672 648 673 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF569-202 - 686 1.1e-155 499.8 117.7 20 20 0.24 2.1e+02 2.6 2.1 1 10 676 685 676 685 0.94 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZNF569-202 - 686 1.2e-111 359.3 118.9 1 19 9.3 8e+03 -2.3 0.1 5 12 114 121 113 123 0.83 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF569-202 - 686 1.2e-111 359.3 118.9 2 19 1.7e-07 0.00015 22.0 1.4 1 23 186 208 186 208 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF569-202 - 686 1.2e-111 359.3 118.9 3 19 3.5e-06 0.003 17.9 3.2 1 23 214 236 214 236 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF569-202 - 686 1.2e-111 359.3 118.9 4 19 6.6e-09 5.7e-06 26.5 0.4 1 23 242 264 242 264 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF569-202 - 686 1.2e-111 359.3 118.9 5 19 1e-07 8.5e-05 22.8 0.4 1 23 270 292 270 292 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF569-202 - 686 1.2e-111 359.3 118.9 6 19 2.8e-08 2.4e-05 24.5 0.1 1 23 298 320 298 320 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF569-202 - 686 1.2e-111 359.3 118.9 7 19 8.2e-08 7e-05 23.1 0.1 1 23 326 348 326 348 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF569-202 - 686 1.2e-111 359.3 118.9 8 19 3e-08 2.6e-05 24.4 0.3 1 23 354 376 354 376 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF569-202 - 686 1.2e-111 359.3 118.9 9 19 3.7e-10 3.2e-07 30.5 0.2 1 23 382 404 382 404 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF569-202 - 686 1.2e-111 359.3 118.9 10 19 2.1e-06 0.0018 18.6 3.6 1 23 410 432 410 432 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF569-202 - 686 1.2e-111 359.3 118.9 11 19 4.7e-09 4e-06 27.0 0.2 1 23 438 460 438 460 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF569-202 - 686 1.2e-111 359.3 118.9 12 19 1.7e-08 1.4e-05 25.2 0.1 1 23 466 488 466 488 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF569-202 - 686 1.2e-111 359.3 118.9 13 19 4.6e-08 3.9e-05 23.9 0.5 1 23 494 516 494 516 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF569-202 - 686 1.2e-111 359.3 118.9 14 19 3e-07 0.00025 21.3 0.1 1 23 522 544 522 544 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF569-202 - 686 1.2e-111 359.3 118.9 15 19 1.1e-08 9.3e-06 25.8 2.0 1 23 550 572 550 572 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF569-202 - 686 1.2e-111 359.3 118.9 16 19 4.1e-09 3.5e-06 27.1 0.2 1 23 578 600 578 600 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF569-202 - 686 1.2e-111 359.3 118.9 17 19 3.4e-09 2.9e-06 27.4 0.3 1 23 606 628 606 628 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF569-202 - 686 1.2e-111 359.3 118.9 18 19 3.1e-08 2.7e-05 24.4 1.0 1 23 634 656 634 656 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF569-202 - 686 1.2e-111 359.3 118.9 19 19 2.4e-07 0.0002 21.6 3.0 1 23 662 684 662 684 0.93 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZNF569-202 - 686 2.5e-61 199.0 119.5 1 18 4e-06 0.0034 18.1 0.7 1 23 186 208 186 209 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF569-202 - 686 2.5e-61 199.0 119.5 2 18 0.00037 0.32 12.0 2.7 1 23 214 236 214 237 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF569-202 - 686 2.5e-61 199.0 119.5 3 18 8.9e-05 0.076 13.9 0.3 1 23 242 264 242 265 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF569-202 - 686 2.5e-61 199.0 119.5 4 18 8.7e-06 0.0074 17.0 0.4 1 23 270 292 270 293 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF569-202 - 686 2.5e-61 199.0 119.5 5 18 6.3e-06 0.0053 17.5 0.3 1 23 298 320 298 321 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF569-202 - 686 2.5e-61 199.0 119.5 6 18 4.8e-05 0.041 14.7 0.1 1 23 326 348 326 349 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF569-202 - 686 2.5e-61 199.0 119.5 7 18 5e-05 0.043 14.7 0.3 1 23 354 376 354 377 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF569-202 - 686 2.5e-61 199.0 119.5 8 18 1.1e-06 0.00095 19.8 0.3 1 23 382 404 382 405 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF569-202 - 686 2.5e-61 199.0 119.5 9 18 0.00041 0.35 11.8 2.8 1 23 410 432 410 433 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF569-202 - 686 2.5e-61 199.0 119.5 10 18 0.00012 0.1 13.5 0.2 1 23 438 460 438 461 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF569-202 - 686 2.5e-61 199.0 119.5 11 18 4.9e-06 0.0042 17.8 0.2 1 23 466 488 466 489 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF569-202 - 686 2.5e-61 199.0 119.5 12 18 2e-05 0.017 15.9 0.5 1 23 494 516 494 517 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF569-202 - 686 2.5e-61 199.0 119.5 13 18 0.00041 0.35 11.8 0.2 3 23 524 544 522 545 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF569-202 - 686 2.5e-61 199.0 119.5 14 18 7.3e-06 0.0063 17.3 1.9 1 23 550 572 550 573 0.81 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF569-202 - 686 2.5e-61 199.0 119.5 15 18 7.8e-06 0.0067 17.2 0.2 1 23 578 600 578 601 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF569-202 - 686 2.5e-61 199.0 119.5 16 18 5.1e-05 0.043 14.7 0.3 1 23 606 628 606 629 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF569-202 - 686 2.5e-61 199.0 119.5 17 18 5.5e-05 0.047 14.5 0.9 3 23 636 656 634 657 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF569-202 - 686 2.5e-61 199.0 119.5 18 18 6.1e-05 0.052 14.4 2.5 1 23 662 684 662 685 0.95 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF569-202 - 686 6.5e-39 131.2 115.2 1 18 0.015 13 5.9 0.5 2 24 186 208 186 211 0.85 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF569-202 - 686 6.5e-39 131.2 115.2 2 18 0.27 2.3e+02 1.9 2.5 2 20 214 232 214 239 0.76 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF569-202 - 686 6.5e-39 131.2 115.2 3 18 0.00041 0.35 10.9 0.2 2 22 242 262 241 266 0.85 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF569-202 - 686 6.5e-39 131.2 115.2 4 18 0.00096 0.82 9.8 0.7 2 22 270 290 270 294 0.81 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF569-202 - 686 6.5e-39 131.2 115.2 5 18 1.6e-06 0.0014 18.6 0.8 2 24 298 320 298 323 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF569-202 - 686 6.5e-39 131.2 115.2 6 18 6.3e-07 0.00054 19.9 0.1 2 24 326 348 326 351 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF569-202 - 686 6.5e-39 131.2 115.2 7 18 0.0028 2.4 8.3 0.2 2 12 354 364 354 372 0.90 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF569-202 - 686 6.5e-39 131.2 115.2 8 18 7e-07 0.0006 19.7 0.6 2 24 382 404 382 407 0.96 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF569-202 - 686 6.5e-39 131.2 115.2 9 18 0.0065 5.5 7.1 2.9 2 24 410 432 410 435 0.86 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF569-202 - 686 6.5e-39 131.2 115.2 10 18 0.0026 2.2 8.4 0.1 2 11 438 447 438 458 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF569-202 - 686 6.5e-39 131.2 115.2 11 18 8.3e-05 0.071 13.1 0.4 2 24 466 488 466 491 0.90 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF569-202 - 686 6.5e-39 131.2 115.2 12 18 7.2e-05 0.062 13.3 1.1 2 24 494 516 494 519 0.92 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF569-202 - 686 6.5e-39 131.2 115.2 13 18 6.3e-06 0.0054 16.7 0.2 2 24 522 544 522 547 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF569-202 - 686 6.5e-39 131.2 115.2 14 18 0.00028 0.24 11.5 2.3 2 24 550 572 550 575 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF569-202 - 686 6.5e-39 131.2 115.2 15 18 2.2e-05 0.018 15.0 0.2 2 24 578 600 578 603 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF569-202 - 686 6.5e-39 131.2 115.2 16 18 0.0042 3.6 7.7 0.3 2 12 606 616 606 628 0.84 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF569-202 - 686 6.5e-39 131.2 115.2 17 18 3.3e-05 0.028 14.4 0.9 2 24 634 656 634 659 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF569-202 - 686 6.5e-39 131.2 115.2 18 18 0.32 2.7e+02 1.7 0.5 2 12 662 672 662 673 0.88 C2H2-type zinc finger KRAB PF01352.27 42 ZNF569-202 - 686 4.7e-25 87.0 0.1 1 1 1.2e-27 9.8e-25 85.9 0.1 2 42 8 48 7 48 0.98 KRAB box Zn-ribbon_8 PF09723.10 40 ZNF569-202 - 686 1.2e-21 76.5 88.7 1 15 0.0052 4.4 7.5 2.7 6 34 186 221 185 226 0.82 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF569-202 - 686 1.2e-21 76.5 88.7 2 15 0.086 74 3.6 0.6 6 17 214 225 212 234 0.85 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF569-202 - 686 1.2e-21 76.5 88.7 3 15 4.3e-05 0.037 14.2 2.2 6 34 242 277 241 283 0.87 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF569-202 - 686 1.2e-21 76.5 88.7 4 15 1.8e-06 0.0016 18.5 1.7 6 38 298 337 297 339 0.89 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF569-202 - 686 1.2e-21 76.5 88.7 5 15 0.00011 0.095 12.8 4.3 6 35 354 390 353 394 0.87 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF569-202 - 686 1.2e-21 76.5 88.7 6 15 0.0008 0.68 10.1 5.9 6 34 382 417 381 423 0.83 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF569-202 - 686 1.2e-21 76.5 88.7 7 15 0.00045 0.39 10.9 5.4 6 34 410 445 408 450 0.90 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF569-202 - 686 1.2e-21 76.5 88.7 8 15 1.1e-05 0.0096 16.0 1.9 6 35 438 474 436 479 0.90 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF569-202 - 686 1.2e-21 76.5 88.7 9 15 4.5e-05 0.038 14.1 4.4 6 36 494 531 493 535 0.87 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF569-202 - 686 1.2e-21 76.5 88.7 10 15 0.0071 6.1 7.1 0.2 6 20 522 536 521 540 0.87 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF569-202 - 686 1.2e-21 76.5 88.7 11 15 5.9e-05 0.05 13.7 3.6 6 36 550 587 549 591 0.79 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF569-202 - 686 1.2e-21 76.5 88.7 12 15 0.00025 0.21 11.7 3.4 6 34 578 613 577 616 0.80 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF569-202 - 686 1.2e-21 76.5 88.7 13 15 0.00074 0.63 10.2 2.8 6 36 606 643 605 646 0.76 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF569-202 - 686 1.2e-21 76.5 88.7 14 15 0.0013 1.1 9.4 1.8 6 35 634 670 632 675 0.76 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF569-202 - 686 1.2e-21 76.5 88.7 15 15 0.057 48 4.2 0.3 6 16 662 672 660 682 0.83 Zinc ribbon domain zf-C2H2_jaz PF12171.8 27 ZNF569-202 - 686 1.1e-14 54.2 89.9 1 18 3.5 3e+03 -1.3 0.1 7 13 115 121 114 122 0.86 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF569-202 - 686 1.1e-14 54.2 89.9 2 18 0.011 9.5 6.6 0.1 2 21 186 205 185 206 0.84 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF569-202 - 686 1.1e-14 54.2 89.9 3 18 0.017 15 6.0 2.3 2 22 214 234 213 234 0.95 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF569-202 - 686 1.1e-14 54.2 89.9 4 18 0.0018 1.5 9.2 0.3 2 22 242 262 241 262 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF569-202 - 686 1.1e-14 54.2 89.9 5 18 0.0017 1.5 9.2 0.7 2 22 270 290 269 290 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF569-202 - 686 1.1e-14 54.2 89.9 6 18 0.01 8.6 6.8 0.3 2 22 298 318 297 318 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF569-202 - 686 1.1e-14 54.2 89.9 7 18 0.017 15 6.0 0.0 2 24 326 348 325 348 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF569-202 - 686 1.1e-14 54.2 89.9 8 18 0.00032 0.27 11.6 0.1 2 24 382 404 381 404 0.95 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF569-202 - 686 1.1e-14 54.2 89.9 9 18 0.00073 0.62 10.4 2.9 2 22 410 430 409 430 0.95 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF569-202 - 686 1.1e-14 54.2 89.9 10 18 0.0069 5.9 7.3 0.1 2 22 438 458 437 458 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF569-202 - 686 1.1e-14 54.2 89.9 11 18 0.002 1.7 9.0 0.2 2 22 466 486 465 486 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF569-202 - 686 1.1e-14 54.2 89.9 12 18 0.016 13 6.2 1.0 2 22 494 514 493 514 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF569-202 - 686 1.1e-14 54.2 89.9 13 18 0.01 8.9 6.7 0.1 2 24 522 544 521 544 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF569-202 - 686 1.1e-14 54.2 89.9 14 18 3.5 3e+03 -1.3 0.9 2 24 550 572 549 572 0.79 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF569-202 - 686 1.1e-14 54.2 89.9 15 18 0.034 29 5.1 0.0 2 24 578 600 577 600 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF569-202 - 686 1.1e-14 54.2 89.9 16 18 0.12 1e+02 3.3 0.1 2 24 606 628 605 628 0.91 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF569-202 - 686 1.1e-14 54.2 89.9 17 18 1.1 9.6e+02 0.3 0.2 2 22 634 654 633 656 0.87 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF569-202 - 686 1.1e-14 54.2 89.9 18 18 0.06 51 4.3 0.4 4 22 664 682 661 682 0.89 Zinc-finger double-stranded RNA-binding zinc_ribbon_15 PF17032.5 86 ZNF569-202 - 686 3e-14 53.5 75.5 1 10 2.8 2.4e+03 -0.6 0.4 65 75 185 195 148 201 0.59 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF569-202 - 686 3e-14 53.5 75.5 2 10 0.0015 1.3 9.8 7.2 26 75 202 251 186 257 0.87 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF569-202 - 686 3e-14 53.5 75.5 3 10 0.001 0.86 10.4 3.4 30 78 262 310 254 313 0.85 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF569-202 - 686 3e-14 53.5 75.5 4 10 0.00047 0.4 11.5 0.6 30 76 318 364 310 368 0.88 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF569-202 - 686 3e-14 53.5 75.5 5 10 1e-05 0.0085 16.8 2.2 23 81 368 425 361 428 0.84 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF569-202 - 686 3e-14 53.5 75.5 6 10 0.00066 0.56 11.0 2.1 25 79 425 479 424 484 0.88 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF569-202 - 686 3e-14 53.5 75.5 7 10 0.00021 0.18 12.6 2.8 31 81 459 509 452 512 0.84 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF569-202 - 686 3e-14 53.5 75.5 8 10 0.00045 0.38 11.5 1.7 25 76 509 560 505 564 0.92 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF569-202 - 686 3e-14 53.5 75.5 9 10 0.00017 0.15 12.8 1.4 28 78 569 618 557 622 0.80 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF569-202 - 686 3e-14 53.5 75.5 10 10 0.001 0.88 10.4 0.7 35 78 631 674 619 677 0.88 zinc-ribbon family XPA_N PF01286.18 32 ZNF569-202 - 686 3.6e-10 39.7 87.4 1 19 0.91 7.8e+02 0.2 0.1 6 13 114 121 112 123 0.86 XPA protein N-terminal XPA_N PF01286.18 32 ZNF569-202 - 686 3.6e-10 39.7 87.4 2 19 0.098 83 3.3 0.1 3 13 187 197 185 199 0.87 XPA protein N-terminal XPA_N PF01286.18 32 ZNF569-202 - 686 3.6e-10 39.7 87.4 3 19 0.9 7.7e+02 0.3 0.1 3 12 215 224 213 234 0.84 XPA protein N-terminal XPA_N PF01286.18 32 ZNF569-202 - 686 3.6e-10 39.7 87.4 4 19 0.024 20 5.3 0.1 3 11 243 251 242 257 0.91 XPA protein N-terminal XPA_N PF01286.18 32 ZNF569-202 - 686 3.6e-10 39.7 87.4 5 19 0.044 38 4.4 0.2 4 12 272 280 269 288 0.83 XPA protein N-terminal XPA_N PF01286.18 32 ZNF569-202 - 686 3.6e-10 39.7 87.4 6 19 0.02 17 5.6 0.3 3 12 299 308 297 311 0.88 XPA protein N-terminal XPA_N PF01286.18 32 ZNF569-202 - 686 3.6e-10 39.7 87.4 7 19 0.048 41 4.3 0.1 4 12 328 336 325 337 0.88 XPA protein N-terminal XPA_N PF01286.18 32 ZNF569-202 - 686 3.6e-10 39.7 87.4 8 19 0.011 9 6.4 0.2 3 12 355 364 353 368 0.90 XPA protein N-terminal XPA_N PF01286.18 32 ZNF569-202 - 686 3.6e-10 39.7 87.4 9 19 0.0029 2.5 8.2 0.2 3 14 383 394 381 398 0.91 XPA protein N-terminal XPA_N PF01286.18 32 ZNF569-202 - 686 3.6e-10 39.7 87.4 10 19 0.08 68 3.6 0.3 3 12 411 420 409 421 0.88 XPA protein N-terminal XPA_N PF01286.18 32 ZNF569-202 - 686 3.6e-10 39.7 87.4 11 19 0.02 17 5.5 0.1 3 12 439 448 437 454 0.89 XPA protein N-terminal XPA_N PF01286.18 32 ZNF569-202 - 686 3.6e-10 39.7 87.4 12 19 0.015 13 6.0 0.1 3 12 467 476 465 481 0.89 XPA protein N-terminal XPA_N PF01286.18 32 ZNF569-202 - 686 3.6e-10 39.7 87.4 13 19 0.021 18 5.5 0.3 3 12 495 504 493 506 0.88 XPA protein N-terminal XPA_N PF01286.18 32 ZNF569-202 - 686 3.6e-10 39.7 87.4 14 19 0.027 23 5.2 0.2 3 12 523 532 521 533 0.88 XPA protein N-terminal XPA_N PF01286.18 32 ZNF569-202 - 686 3.6e-10 39.7 87.4 15 19 0.0083 7.1 6.8 1.3 3 17 551 565 549 567 0.84 XPA protein N-terminal XPA_N PF01286.18 32 ZNF569-202 - 686 3.6e-10 39.7 87.4 16 19 0.026 22 5.2 0.1 3 12 579 588 577 589 0.87 XPA protein N-terminal XPA_N PF01286.18 32 ZNF569-202 - 686 3.6e-10 39.7 87.4 17 19 0.0092 7.9 6.6 0.3 3 14 607 618 605 622 0.91 XPA protein N-terminal XPA_N PF01286.18 32 ZNF569-202 - 686 3.6e-10 39.7 87.4 18 19 0.11 91 3.2 0.3 3 12 635 644 633 646 0.89 XPA protein N-terminal XPA_N PF01286.18 32 ZNF569-202 - 686 3.6e-10 39.7 87.4 19 19 0.0092 7.8 6.6 0.0 3 12 663 672 661 680 0.83 XPA protein N-terminal zf_UBZ PF18439.1 32 ZNF569-202 - 686 1.1e-09 37.7 81.2 1 19 7.1 6.1e+03 -3.1 0.8 7 20 151 164 151 164 0.92 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF569-202 - 686 1.1e-09 37.7 81.2 2 19 0.15 1.3e+02 2.3 0.0 3 18 186 202 184 205 0.78 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF569-202 - 686 1.1e-09 37.7 81.2 3 19 0.06 52 3.6 0.2 3 17 214 228 212 232 0.86 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF569-202 - 686 1.1e-09 37.7 81.2 4 19 0.024 20 4.9 0.1 2 12 241 251 240 260 0.88 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF569-202 - 686 1.1e-09 37.7 81.2 5 19 0.028 24 4.6 0.3 3 15 270 282 268 289 0.82 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF569-202 - 686 1.1e-09 37.7 81.2 6 19 0.015 13 5.5 0.2 3 16 298 312 296 317 0.78 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF569-202 - 686 1.1e-09 37.7 81.2 7 19 0.02 17 5.1 0.0 3 13 326 336 324 344 0.88 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF569-202 - 686 1.1e-09 37.7 81.2 8 19 0.0025 2.1 8.0 0.1 3 16 354 367 352 369 0.84 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF569-202 - 686 1.1e-09 37.7 81.2 9 19 0.0097 8.3 6.1 0.1 3 16 382 396 380 401 0.81 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF569-202 - 686 1.1e-09 37.7 81.2 10 19 0.052 44 3.8 0.6 3 20 410 428 408 429 0.78 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF569-202 - 686 1.1e-09 37.7 81.2 11 19 0.091 77 3.0 0.1 3 12 438 447 436 456 0.87 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF569-202 - 686 1.1e-09 37.7 81.2 12 19 0.0048 4.1 7.1 0.1 3 15 466 478 464 485 0.78 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF569-202 - 686 1.1e-09 37.7 81.2 13 19 0.017 15 5.3 0.2 3 18 494 510 492 513 0.78 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF569-202 - 686 1.1e-09 37.7 81.2 14 19 0.036 31 4.3 0.1 3 14 522 533 520 540 0.86 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF569-202 - 686 1.1e-09 37.7 81.2 15 19 0.013 11 5.7 0.6 3 13 550 560 548 565 0.87 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF569-202 - 686 1.1e-09 37.7 81.2 16 19 0.011 9.6 5.9 0.1 3 14 578 589 576 596 0.87 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF569-202 - 686 1.1e-09 37.7 81.2 17 19 0.016 14 5.4 0.1 3 15 606 618 604 624 0.83 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF569-202 - 686 1.1e-09 37.7 81.2 18 19 0.014 12 5.6 0.1 3 14 634 645 632 652 0.85 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF569-202 - 686 1.1e-09 37.7 81.2 19 19 0.25 2.2e+02 1.6 0.1 3 14 662 673 660 680 0.85 Ubiquitin-Binding Zinc Finger zf-C2HE PF16278.5 64 ZNF569-202 - 686 1.3e-09 38.3 103.4 1 18 4.7 4e+03 -1.6 0.1 39 52 111 124 87 125 0.75 C2HE / C2H2 / C2HC zinc-binding finger zf-C2HE PF16278.5 64 ZNF569-202 - 686 1.3e-09 38.3 103.4 2 18 2.3e-05 0.019 15.4 0.7 35 61 183 208 159 211 0.84 C2HE / C2H2 / C2HC zinc-binding finger zf-C2HE PF16278.5 64 ZNF569-202 - 686 1.3e-09 38.3 103.4 3 18 0.54 4.6e+02 1.4 1.5 36 61 212 236 210 239 0.82 C2HE / C2H2 / C2HC zinc-binding finger zf-C2HE PF16278.5 64 ZNF569-202 - 686 1.3e-09 38.3 103.4 4 18 0.0056 4.8 7.7 2.7 33 57 237 260 225 267 0.80 C2HE / C2H2 / C2HC zinc-binding finger zf-C2HE PF16278.5 64 ZNF569-202 - 686 1.3e-09 38.3 103.4 5 18 1.1 9.6e+02 0.3 0.7 36 50 268 282 264 293 0.79 C2HE / C2H2 / C2HC zinc-binding finger zf-C2HE PF16278.5 64 ZNF569-202 - 686 1.3e-09 38.3 103.4 6 18 0.051 44 4.6 0.7 35 57 295 316 285 323 0.74 C2HE / C2H2 / C2HC zinc-binding finger zf-C2HE PF16278.5 64 ZNF569-202 - 686 1.3e-09 38.3 103.4 7 18 0.0053 4.6 7.8 0.1 35 62 323 349 315 351 0.88 C2HE / C2H2 / C2HC zinc-binding finger zf-C2HE PF16278.5 64 ZNF569-202 - 686 1.3e-09 38.3 103.4 8 18 0.0032 2.7 8.5 0.1 36 61 352 376 349 379 0.90 C2HE / C2H2 / C2HC zinc-binding finger zf-C2HE PF16278.5 64 ZNF569-202 - 686 1.3e-09 38.3 103.4 9 18 0.016 14 6.2 0.1 36 61 380 404 377 407 0.85 C2HE / C2H2 / C2HC zinc-binding finger zf-C2HE PF16278.5 64 ZNF569-202 - 686 1.3e-09 38.3 103.4 10 18 0.054 46 4.6 5.0 32 57 432 456 402 463 0.80 C2HE / C2H2 / C2HC zinc-binding finger zf-C2HE PF16278.5 64 ZNF569-202 - 686 1.3e-09 38.3 103.4 11 18 0.67 5.8e+02 1.0 0.3 35 50 463 477 457 489 0.76 C2HE / C2H2 / C2HC zinc-binding finger zf-C2HE PF16278.5 64 ZNF569-202 - 686 1.3e-09 38.3 103.4 12 18 0.12 1.1e+02 3.4 1.2 35 49 491 505 474 516 0.81 C2HE / C2H2 / C2HC zinc-binding finger zf-C2HE PF16278.5 64 ZNF569-202 - 686 1.3e-09 38.3 103.4 13 18 8.3e-05 0.071 13.6 0.3 35 62 519 545 506 547 0.89 C2HE / C2H2 / C2HC zinc-binding finger zf-C2HE PF16278.5 64 ZNF569-202 - 686 1.3e-09 38.3 103.4 14 18 0.22 1.9e+02 2.6 1.4 36 61 548 572 545 575 0.88 C2HE / C2H2 / C2HC zinc-binding finger zf-C2HE PF16278.5 64 ZNF569-202 - 686 1.3e-09 38.3 103.4 15 18 0.051 44 4.6 0.1 35 61 575 600 570 603 0.77 C2HE / C2H2 / C2HC zinc-binding finger zf-C2HE PF16278.5 64 ZNF569-202 - 686 1.3e-09 38.3 103.4 16 18 0.0095 8.1 7.0 0.1 36 61 604 628 601 631 0.84 C2HE / C2H2 / C2HC zinc-binding finger zf-C2HE PF16278.5 64 ZNF569-202 - 686 1.3e-09 38.3 103.4 17 18 0.0009 0.77 10.3 0.5 36 62 632 657 629 659 0.92 C2HE / C2H2 / C2HC zinc-binding finger zf-C2HE PF16278.5 64 ZNF569-202 - 686 1.3e-09 38.3 103.4 18 18 0.3 2.6e+02 2.2 0.4 36 49 660 673 657 682 0.74 C2HE / C2H2 / C2HC zinc-binding finger zf-C2H2_11 PF16622.5 29 ZNF569-202 - 686 1.3e-08 34.4 86.8 1 18 0.00037 0.31 10.8 0.3 5 26 186 207 184 208 0.94 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF569-202 - 686 1.3e-08 34.4 86.8 2 18 1.6 1.4e+03 -0.9 0.3 7 26 216 235 213 236 0.85 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF569-202 - 686 1.3e-08 34.4 86.8 3 18 0.0035 3 7.7 0.3 3 26 240 263 239 264 0.89 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF569-202 - 686 1.3e-08 34.4 86.8 4 18 8.3 7.1e+03 -3.1 0.2 7 15 272 280 270 285 0.77 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF569-202 - 686 1.3e-08 34.4 86.8 5 18 0.023 19 5.1 0.1 6 23 299 316 296 320 0.87 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF569-202 - 686 1.3e-08 34.4 86.8 6 18 0.032 28 4.6 0.0 7 25 328 346 325 347 0.93 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF569-202 - 686 1.3e-08 34.4 86.8 7 18 0.01 8.5 6.2 0.1 5 26 354 375 351 376 0.90 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF569-202 - 686 1.3e-08 34.4 86.8 8 18 0.0062 5.3 6.9 0.1 6 25 383 402 380 403 0.92 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF569-202 - 686 1.3e-08 34.4 86.8 9 18 7.2 6.1e+03 -2.9 0.3 7 14 412 419 410 421 0.70 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF569-202 - 686 1.3e-08 34.4 86.8 10 18 0.053 45 3.9 0.1 6 26 439 459 436 460 0.88 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF569-202 - 686 1.3e-08 34.4 86.8 11 18 0.27 2.3e+02 1.7 0.1 7 17 468 478 466 487 0.79 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF569-202 - 686 1.3e-08 34.4 86.8 12 18 0.38 3.2e+02 1.2 0.2 6 15 495 504 493 507 0.86 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF569-202 - 686 1.3e-08 34.4 86.8 13 18 0.0032 2.8 7.8 0.1 7 25 524 542 521 543 0.93 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF569-202 - 686 1.3e-08 34.4 86.8 14 18 0.099 85 3.0 1.0 6 25 551 570 548 571 0.85 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF569-202 - 686 1.3e-08 34.4 86.8 15 18 0.0068 5.8 6.8 0.1 7 25 580 598 578 598 0.93 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF569-202 - 686 1.3e-08 34.4 86.8 16 18 0.01 8.5 6.2 0.2 6 24 607 625 604 626 0.89 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF569-202 - 686 1.3e-08 34.4 86.8 17 18 0.0039 3.3 7.5 0.4 7 25 636 654 633 654 0.94 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF569-202 - 686 1.3e-08 34.4 86.8 18 18 0.0023 1.9 8.3 2.4 6 26 663 683 660 686 0.92 zinc-finger C2H2-type zf_C2H2_13 PF18508.1 42 ZNF569-202 - 686 4.4e-07 29.4 56.1 1 16 0.058 49 3.6 0.2 20 39 188 208 186 210 0.76 Zinc finger domain zf_C2H2_13 PF18508.1 42 ZNF569-202 - 686 4.4e-07 29.4 56.1 2 16 0.019 16 5.2 0.1 20 38 244 263 227 266 0.85 Zinc finger domain zf_C2H2_13 PF18508.1 42 ZNF569-202 - 686 4.4e-07 29.4 56.1 3 16 1.8 1.5e+03 -1.2 0.2 20 39 272 292 271 293 0.78 Zinc finger domain zf_C2H2_13 PF18508.1 42 ZNF569-202 - 686 4.4e-07 29.4 56.1 4 16 0.018 15 5.2 0.1 20 39 300 320 299 322 0.80 Zinc finger domain zf_C2H2_13 PF18508.1 42 ZNF569-202 - 686 4.4e-07 29.4 56.1 5 16 0.097 83 2.9 0.0 20 26 328 334 326 349 0.77 Zinc finger domain zf_C2H2_13 PF18508.1 42 ZNF569-202 - 686 4.4e-07 29.4 56.1 6 16 0.12 1e+02 2.6 0.1 20 36 356 373 354 377 0.69 Zinc finger domain zf_C2H2_13 PF18508.1 42 ZNF569-202 - 686 4.4e-07 29.4 56.1 7 16 0.026 23 4.7 0.0 20 39 384 404 383 406 0.75 Zinc finger domain zf_C2H2_13 PF18508.1 42 ZNF569-202 - 686 4.4e-07 29.4 56.1 8 16 0.028 24 4.6 0.1 20 38 440 459 439 462 0.80 Zinc finger domain zf_C2H2_13 PF18508.1 42 ZNF569-202 - 686 4.4e-07 29.4 56.1 9 16 0.02 17 5.1 0.1 19 35 467 484 465 489 0.76 Zinc finger domain zf_C2H2_13 PF18508.1 42 ZNF569-202 - 686 4.4e-07 29.4 56.1 10 16 0.11 94 2.7 0.1 20 27 496 503 495 516 0.83 Zinc finger domain zf_C2H2_13 PF18508.1 42 ZNF569-202 - 686 4.4e-07 29.4 56.1 11 16 0.026 22 4.7 0.1 20 39 524 544 523 546 0.81 Zinc finger domain zf_C2H2_13 PF18508.1 42 ZNF569-202 - 686 4.4e-07 29.4 56.1 12 16 0.16 1.3e+02 2.2 0.3 20 33 552 565 551 573 0.75 Zinc finger domain zf_C2H2_13 PF18508.1 42 ZNF569-202 - 686 4.4e-07 29.4 56.1 13 16 0.0032 2.8 7.6 0.0 19 39 579 600 577 601 0.77 Zinc finger domain zf_C2H2_13 PF18508.1 42 ZNF569-202 - 686 4.4e-07 29.4 56.1 14 16 0.024 21 4.8 0.1 20 29 608 617 607 629 0.72 Zinc finger domain zf_C2H2_13 PF18508.1 42 ZNF569-202 - 686 4.4e-07 29.4 56.1 15 16 0.14 1.2e+02 2.4 0.1 20 39 636 656 636 658 0.80 Zinc finger domain zf_C2H2_13 PF18508.1 42 ZNF569-202 - 686 4.4e-07 29.4 56.1 16 16 2.1 1.8e+03 -1.4 0.2 20 31 664 675 663 684 0.71 Zinc finger domain # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF569-202.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF569-202.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF569-202.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF569-202.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF569-202.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:09:24 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZNF569-203 - 527 2.9e-159 511.1 113.2 1 19 0.00078 0.47 11.0 1.0 8 25 20 37 18 38 0.88 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF569-203 - 527 2.9e-159 511.1 113.2 2 19 4.4e-13 2.6e-10 40.2 0.8 1 26 41 66 41 66 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF569-203 - 527 2.9e-159 511.1 113.2 3 19 7.5e-06 0.0045 17.4 1.3 2 24 70 92 69 94 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF569-203 - 527 2.9e-159 511.1 113.2 4 19 9.6e-12 5.8e-09 36.0 0.4 1 25 97 121 97 122 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF569-203 - 527 2.9e-159 511.1 113.2 5 19 5.2e-11 3.1e-08 33.7 0.1 1 25 125 149 125 150 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF569-203 - 527 2.9e-159 511.1 113.2 6 19 4.9e-10 2.9e-07 30.6 0.2 2 24 154 176 153 178 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF569-203 - 527 2.9e-159 511.1 113.2 7 19 1.4e-12 8.4e-10 38.6 0.4 2 25 182 205 181 206 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF569-203 - 527 2.9e-159 511.1 113.2 8 19 9.4e-11 5.6e-08 32.9 0.1 5 25 213 233 209 234 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF569-203 - 527 2.9e-159 511.1 113.2 9 19 8.2e-13 4.9e-10 39.4 2.0 1 26 237 262 237 262 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF569-203 - 527 2.9e-159 511.1 113.2 10 19 3.6e-09 2.1e-06 27.9 0.6 4 24 268 288 265 290 0.90 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF569-203 - 527 2.9e-159 511.1 113.2 11 19 2.3e-11 1.4e-08 34.8 0.2 1 25 293 317 293 318 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF569-203 - 527 2.9e-159 511.1 113.2 12 19 3e-10 1.8e-07 31.3 0.1 1 25 321 345 321 346 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF569-203 - 527 2.9e-159 511.1 113.2 13 19 9.9e-10 5.9e-07 29.6 0.5 4 25 352 373 349 374 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF569-203 - 527 2.9e-159 511.1 113.2 14 19 1.7e-12 1e-09 38.4 0.3 2 25 378 401 377 402 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF569-203 - 527 2.9e-159 511.1 113.2 15 19 1.3e-11 8e-09 35.5 0.2 2 25 406 429 406 430 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF569-203 - 527 2.9e-159 511.1 113.2 16 19 1.2e-11 7.2e-09 35.7 0.2 2 25 434 457 433 458 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF569-203 - 527 2.9e-159 511.1 113.2 17 19 1.2e-10 7.3e-08 32.5 0.1 2 25 462 485 461 486 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF569-203 - 527 2.9e-159 511.1 113.2 18 19 2.9e-12 1.8e-09 37.6 1.1 2 25 490 513 489 514 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF569-203 - 527 2.9e-159 511.1 113.2 19 19 0.26 1.5e+02 3.0 2.1 1 10 517 526 517 526 0.94 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZNF569-203 - 527 1.2e-114 368.8 115.5 1 18 1.8e-07 0.00011 22.5 1.4 1 23 27 49 27 49 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF569-203 - 527 1.2e-114 368.8 115.5 2 18 3.6e-06 0.0022 18.4 3.2 1 23 55 77 55 77 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF569-203 - 527 1.2e-114 368.8 115.5 3 18 6.9e-09 4.1e-06 26.9 0.4 1 23 83 105 83 105 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF569-203 - 527 1.2e-114 368.8 115.5 4 18 1e-07 6.3e-05 23.2 0.4 1 23 111 133 111 133 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF569-203 - 527 1.2e-114 368.8 115.5 5 18 2.9e-08 1.8e-05 25.0 0.1 1 23 139 161 139 161 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF569-203 - 527 1.2e-114 368.8 115.5 6 18 8.6e-08 5.1e-05 23.5 0.1 1 23 167 189 167 189 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF569-203 - 527 1.2e-114 368.8 115.5 7 18 3.2e-08 1.9e-05 24.9 0.3 1 23 195 217 195 217 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF569-203 - 527 1.2e-114 368.8 115.5 8 18 3.9e-10 2.3e-07 30.9 0.2 1 23 223 245 223 245 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF569-203 - 527 1.2e-114 368.8 115.5 9 18 2.2e-06 0.0013 19.0 3.6 1 23 251 273 251 273 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF569-203 - 527 1.2e-114 368.8 115.5 10 18 4.9e-09 2.9e-06 27.4 0.2 1 23 279 301 279 301 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF569-203 - 527 1.2e-114 368.8 115.5 11 18 1.8e-08 1e-05 25.7 0.1 1 23 307 329 307 329 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF569-203 - 527 1.2e-114 368.8 115.5 12 18 4.8e-08 2.9e-05 24.3 0.5 1 23 335 357 335 357 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF569-203 - 527 1.2e-114 368.8 115.5 13 18 3.1e-07 0.00018 21.7 0.1 1 23 363 385 363 385 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF569-203 - 527 1.2e-114 368.8 115.5 14 18 1.1e-08 6.8e-06 26.2 2.0 1 23 391 413 391 413 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF569-203 - 527 1.2e-114 368.8 115.5 15 18 4.3e-09 2.6e-06 27.6 0.2 1 23 419 441 419 441 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF569-203 - 527 1.2e-114 368.8 115.5 16 18 3.5e-09 2.1e-06 27.9 0.3 1 23 447 469 447 469 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF569-203 - 527 1.2e-114 368.8 115.5 17 18 3.3e-08 1.9e-05 24.8 1.0 1 23 475 497 475 497 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF569-203 - 527 1.2e-114 368.8 115.5 18 18 2.5e-07 0.00015 22.0 3.0 1 23 503 525 503 525 0.93 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZNF569-203 - 527 1.1e-64 209.4 114.8 1 18 4.2e-06 0.0025 18.5 0.7 1 23 27 49 27 50 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF569-203 - 527 1.1e-64 209.4 114.8 2 18 0.00039 0.23 12.4 2.7 1 23 55 77 55 78 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF569-203 - 527 1.1e-64 209.4 114.8 3 18 9.3e-05 0.055 14.3 0.3 1 23 83 105 83 106 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF569-203 - 527 1.1e-64 209.4 114.8 4 18 9e-06 0.0054 17.5 0.4 1 23 111 133 111 134 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF569-203 - 527 1.1e-64 209.4 114.8 5 18 6.5e-06 0.0039 17.9 0.3 1 23 139 161 139 162 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF569-203 - 527 1.1e-64 209.4 114.8 6 18 5e-05 0.03 15.2 0.1 1 23 167 189 167 190 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF569-203 - 527 1.1e-64 209.4 114.8 7 18 5.3e-05 0.031 15.1 0.3 1 23 195 217 195 218 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF569-203 - 527 1.1e-64 209.4 114.8 8 18 1.2e-06 0.00069 20.2 0.3 1 23 223 245 223 246 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF569-203 - 527 1.1e-64 209.4 114.8 9 18 0.00043 0.26 12.2 2.8 1 23 251 273 251 274 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF569-203 - 527 1.1e-64 209.4 114.8 10 18 0.00013 0.076 13.9 0.2 1 23 279 301 279 302 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF569-203 - 527 1.1e-64 209.4 114.8 11 18 5.1e-06 0.003 18.2 0.2 1 23 307 329 307 330 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF569-203 - 527 1.1e-64 209.4 114.8 12 18 2.1e-05 0.012 16.4 0.5 1 23 335 357 335 358 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF569-203 - 527 1.1e-64 209.4 114.8 13 18 0.00043 0.26 12.2 0.2 3 23 365 385 363 386 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF569-203 - 527 1.1e-64 209.4 114.8 14 18 7.6e-06 0.0046 17.7 1.9 1 23 391 413 391 414 0.81 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF569-203 - 527 1.1e-64 209.4 114.8 15 18 8.2e-06 0.0049 17.6 0.2 1 23 419 441 419 442 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF569-203 - 527 1.1e-64 209.4 114.8 16 18 5.3e-05 0.032 15.1 0.3 1 23 447 469 447 470 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF569-203 - 527 1.1e-64 209.4 114.8 17 18 5.8e-05 0.034 15.0 0.9 3 23 477 497 475 498 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF569-203 - 527 1.1e-64 209.4 114.8 18 18 6.4e-05 0.038 14.8 2.5 1 23 503 525 503 526 0.95 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF569-203 - 527 3.7e-41 138.4 115.2 1 18 0.016 9.6 6.3 0.5 2 24 27 49 27 52 0.85 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF569-203 - 527 3.7e-41 138.4 115.2 2 18 0.29 1.7e+02 2.3 2.6 2 21 55 74 55 80 0.76 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF569-203 - 527 3.7e-41 138.4 115.2 3 18 0.00043 0.26 11.3 0.2 2 22 83 103 82 107 0.85 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF569-203 - 527 3.7e-41 138.4 115.2 4 18 0.001 0.6 10.2 0.7 2 22 111 131 111 135 0.81 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF569-203 - 527 3.7e-41 138.4 115.2 5 18 1.7e-06 0.001 19.0 0.8 2 24 139 161 139 164 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF569-203 - 527 3.7e-41 138.4 115.2 6 18 6.6e-07 0.0004 20.3 0.1 2 24 167 189 167 192 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF569-203 - 527 3.7e-41 138.4 115.2 7 18 0.003 1.8 8.7 0.2 2 12 195 205 195 213 0.90 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF569-203 - 527 3.7e-41 138.4 115.2 8 18 7.3e-07 0.00044 20.2 0.6 2 24 223 245 223 248 0.96 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF569-203 - 527 3.7e-41 138.4 115.2 9 18 0.0068 4.1 7.5 3.0 2 24 251 273 251 276 0.86 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF569-203 - 527 3.7e-41 138.4 115.2 10 18 0.0027 1.6 8.8 0.1 2 11 279 288 279 299 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF569-203 - 527 3.7e-41 138.4 115.2 11 18 8.8e-05 0.052 13.6 0.4 2 24 307 329 307 332 0.90 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF569-203 - 527 3.7e-41 138.4 115.2 12 18 7.6e-05 0.045 13.8 1.1 2 24 335 357 335 360 0.92 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF569-203 - 527 3.7e-41 138.4 115.2 13 18 6.6e-06 0.004 17.1 0.2 2 24 363 385 363 388 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF569-203 - 527 3.7e-41 138.4 115.2 14 18 0.00029 0.17 11.9 2.3 2 24 391 413 391 416 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF569-203 - 527 3.7e-41 138.4 115.2 15 18 2.3e-05 0.014 15.4 0.2 2 24 419 441 419 444 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF569-203 - 527 3.7e-41 138.4 115.2 16 18 0.0045 2.7 8.1 0.3 2 12 447 457 447 469 0.84 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF569-203 - 527 3.7e-41 138.4 115.2 17 18 3.5e-05 0.021 14.8 0.9 2 24 475 497 475 500 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF569-203 - 527 3.7e-41 138.4 115.2 18 18 0.34 2.1e+02 2.1 0.5 2 12 503 513 503 514 0.88 C2H2-type zinc finger Zn-ribbon_8 PF09723.10 40 ZNF569-203 - 527 1.1e-22 79.8 90.0 1 15 0.0066 3.9 7.7 2.8 6 34 27 62 26 65 0.82 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF569-203 - 527 1.1e-22 79.8 90.0 2 15 0.087 52 4.1 0.5 6 17 55 66 54 77 0.84 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF569-203 - 527 1.1e-22 79.8 90.0 3 15 6e-05 0.036 14.2 2.6 6 34 83 118 82 124 0.87 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF569-203 - 527 1.1e-22 79.8 90.0 4 15 1.8e-06 0.001 19.1 1.6 6 38 139 178 138 181 0.89 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF569-203 - 527 1.1e-22 79.8 90.0 5 15 0.00011 0.064 13.4 4.1 6 35 195 231 194 234 0.87 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF569-203 - 527 1.1e-22 79.8 90.0 6 15 0.00075 0.45 10.7 5.8 6 34 223 258 221 264 0.83 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF569-203 - 527 1.1e-22 79.8 90.0 7 15 0.00081 0.48 10.6 6.0 6 34 251 286 250 290 0.90 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF569-203 - 527 1.1e-22 79.8 90.0 8 15 1.4e-05 0.0084 16.2 2.2 6 35 279 315 278 320 0.90 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF569-203 - 527 1.1e-22 79.8 90.0 9 15 5e-05 0.03 14.4 4.6 6 36 335 372 334 376 0.87 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF569-203 - 527 1.1e-22 79.8 90.0 10 15 0.007 4.2 7.6 0.2 6 20 363 377 361 383 0.88 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF569-203 - 527 1.1e-22 79.8 90.0 11 15 7.2e-05 0.043 13.9 3.9 6 36 391 428 390 433 0.80 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF569-203 - 527 1.1e-22 79.8 90.0 12 15 0.00038 0.22 11.6 3.6 6 34 419 454 418 456 0.80 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF569-203 - 527 1.1e-22 79.8 90.0 13 15 0.0013 0.81 9.9 3.3 6 35 447 483 445 486 0.77 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF569-203 - 527 1.1e-22 79.8 90.0 14 15 0.0016 0.98 9.6 2.0 6 35 475 511 474 515 0.76 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF569-203 - 527 1.1e-22 79.8 90.0 15 15 0.061 36 4.6 0.3 6 16 503 513 501 523 0.83 Zinc ribbon domain zf-C2H2_jaz PF12171.8 27 ZNF569-203 - 527 8.9e-18 64.1 85.3 1 17 0.012 7 7.1 0.1 2 21 27 46 26 47 0.84 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF569-203 - 527 8.9e-18 64.1 85.3 2 17 0.018 11 6.4 2.3 2 22 55 75 54 75 0.95 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF569-203 - 527 8.9e-18 64.1 85.3 3 17 0.0019 1.1 9.6 0.3 2 22 83 103 82 103 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF569-203 - 527 8.9e-18 64.1 85.3 4 17 0.0018 1.1 9.7 0.7 2 22 111 131 110 131 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF569-203 - 527 8.9e-18 64.1 85.3 5 17 0.011 6.4 7.2 0.3 2 22 139 159 138 159 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF569-203 - 527 8.9e-18 64.1 85.3 6 17 0.018 11 6.5 0.0 2 24 167 189 166 189 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF569-203 - 527 8.9e-18 64.1 85.3 7 17 0.00034 0.2 12.0 0.1 2 24 223 245 222 245 0.95 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF569-203 - 527 8.9e-18 64.1 85.3 8 17 0.00077 0.46 10.8 2.9 2 22 251 271 250 271 0.95 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF569-203 - 527 8.9e-18 64.1 85.3 9 17 0.0073 4.4 7.7 0.1 2 22 279 299 278 299 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF569-203 - 527 8.9e-18 64.1 85.3 10 17 0.0021 1.3 9.4 0.2 2 22 307 327 306 327 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF569-203 - 527 8.9e-18 64.1 85.3 11 17 0.017 9.9 6.6 1.0 2 22 335 355 334 355 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF569-203 - 527 8.9e-18 64.1 85.3 12 17 0.011 6.5 7.2 0.1 2 24 363 385 362 385 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF569-203 - 527 8.9e-18 64.1 85.3 13 17 3.7 2.2e+03 -0.9 0.9 2 24 391 413 390 413 0.79 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF569-203 - 527 8.9e-18 64.1 85.3 14 17 0.036 22 5.5 0.0 2 24 419 441 418 441 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF569-203 - 527 8.9e-18 64.1 85.3 15 17 0.13 76 3.8 0.1 2 24 447 469 446 469 0.91 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF569-203 - 527 8.9e-18 64.1 85.3 16 17 1.2 7.1e+02 0.7 0.2 2 22 475 495 474 497 0.87 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF569-203 - 527 8.9e-18 64.1 85.3 17 17 0.063 38 4.7 0.4 4 22 505 523 502 523 0.89 Zinc-finger double-stranded RNA-binding zinc_ribbon_15 PF17032.5 86 ZNF569-203 - 527 5.9e-16 59.0 73.6 1 9 0.0022 1.3 9.8 7.8 26 75 43 92 27 101 0.88 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF569-203 - 527 5.9e-16 59.0 73.6 2 9 0.001 0.62 10.9 3.4 30 78 103 151 97 154 0.84 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF569-203 - 527 5.9e-16 59.0 73.6 3 9 0.00045 0.27 12.0 0.5 30 76 159 205 152 209 0.88 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF569-203 - 527 5.9e-16 59.0 73.6 4 9 1e-05 0.006 17.3 2.2 23 81 209 266 202 269 0.84 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF569-203 - 527 5.9e-16 59.0 73.6 5 9 0.00081 0.48 11.2 2.3 25 79 266 320 265 322 0.88 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF569-203 - 527 5.9e-16 59.0 73.6 6 9 0.0002 0.12 13.1 2.6 32 81 301 350 294 353 0.84 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF569-203 - 527 5.9e-16 59.0 73.6 7 9 0.00037 0.22 12.3 1.4 25 76 350 401 347 406 0.92 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF569-203 - 527 5.9e-16 59.0 73.6 8 9 0.00019 0.11 13.2 1.3 31 78 413 459 400 465 0.82 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF569-203 - 527 5.9e-16 59.0 73.6 9 9 0.0011 0.64 10.8 0.7 35 78 472 515 462 518 0.88 zinc-ribbon family DZR PF12773.7 49 ZNF569-203 - 527 1.2e-15 57.2 72.3 1 8 0.0019 1.2 9.3 0.4 15 42 29 68 24 73 0.87 Double zinc ribbon DZR PF12773.7 49 ZNF569-203 - 527 1.2e-15 57.2 72.3 2 8 0.00056 0.34 11.0 6.7 10 49 80 145 73 145 0.89 Double zinc ribbon DZR PF12773.7 49 ZNF569-203 - 527 1.2e-15 57.2 72.3 3 8 0.0052 3.1 7.9 7.8 1 37 141 203 129 210 0.68 Double zinc ribbon DZR PF12773.7 49 ZNF569-203 - 527 1.2e-15 57.2 72.3 4 8 0.022 13 5.9 14.2 1 49 197 285 197 285 0.86 Double zinc ribbon DZR PF12773.7 49 ZNF569-203 - 527 1.2e-15 57.2 72.3 5 8 0.00018 0.11 12.6 7.2 1 44 281 350 269 354 0.79 Double zinc ribbon DZR PF12773.7 49 ZNF569-203 - 527 1.2e-15 57.2 72.3 6 8 0.00065 0.39 10.8 1.6 14 38 364 400 352 405 0.87 Double zinc ribbon DZR PF12773.7 49 ZNF569-203 - 527 1.2e-15 57.2 72.3 7 8 0.00014 0.081 13.0 0.5 12 40 418 458 410 462 0.86 Double zinc ribbon DZR PF12773.7 49 ZNF569-203 - 527 1.2e-15 57.2 72.3 8 8 0.00054 0.32 11.0 0.5 15 41 477 515 470 518 0.89 Double zinc ribbon zf_UBZ PF18439.1 32 ZNF569-203 - 527 6.9e-14 51.1 73.7 1 18 0.16 93 2.7 0.0 3 18 27 43 25 46 0.78 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF569-203 - 527 6.9e-14 51.1 73.7 2 18 0.064 38 4.0 0.2 3 17 55 69 53 73 0.86 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF569-203 - 527 6.9e-14 51.1 73.7 3 18 0.025 15 5.3 0.1 2 12 82 92 81 101 0.88 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF569-203 - 527 6.9e-14 51.1 73.7 4 18 0.03 18 5.0 0.3 3 15 111 123 109 130 0.82 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF569-203 - 527 6.9e-14 51.1 73.7 5 18 0.016 9.6 5.9 0.2 3 16 139 153 137 158 0.78 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF569-203 - 527 6.9e-14 51.1 73.7 6 18 0.021 12 5.5 0.0 3 13 167 177 165 185 0.88 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF569-203 - 527 6.9e-14 51.1 73.7 7 18 0.0026 1.6 8.4 0.1 3 16 195 208 193 210 0.84 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF569-203 - 527 6.9e-14 51.1 73.7 8 18 0.01 6.1 6.5 0.1 3 16 223 237 221 242 0.81 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF569-203 - 527 6.9e-14 51.1 73.7 9 18 0.055 33 4.2 0.6 3 20 251 269 249 270 0.78 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF569-203 - 527 6.9e-14 51.1 73.7 10 18 0.096 58 3.4 0.1 3 12 279 288 277 297 0.87 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF569-203 - 527 6.9e-14 51.1 73.7 11 18 0.0051 3 7.5 0.1 3 15 307 319 305 326 0.78 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF569-203 - 527 6.9e-14 51.1 73.7 12 18 0.018 11 5.7 0.2 3 19 335 352 333 354 0.78 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF569-203 - 527 6.9e-14 51.1 73.7 13 18 0.038 23 4.7 0.1 3 14 363 374 361 381 0.86 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF569-203 - 527 6.9e-14 51.1 73.7 14 18 0.013 8 6.2 0.6 3 13 391 401 389 406 0.87 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF569-203 - 527 6.9e-14 51.1 73.7 15 18 0.012 7.2 6.3 0.1 3 14 419 430 417 437 0.87 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF569-203 - 527 6.9e-14 51.1 73.7 16 18 0.017 10 5.8 0.1 3 15 447 459 445 465 0.83 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF569-203 - 527 6.9e-14 51.1 73.7 17 18 0.015 8.9 6.0 0.1 3 14 475 486 473 493 0.85 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF569-203 - 527 6.9e-14 51.1 73.7 18 18 0.27 1.6e+02 2.0 0.1 3 14 503 514 501 521 0.85 Ubiquitin-Binding Zinc Finger zf-C2HE PF16278.5 64 ZNF569-203 - 527 6.6e-13 48.9 98.3 1 18 2.3e-05 0.014 15.8 0.5 36 61 25 49 6 52 0.86 C2HE / C2H2 / C2HC zinc-binding finger zf-C2HE PF16278.5 64 ZNF569-203 - 527 6.6e-13 48.9 98.3 2 18 0.53 3.2e+02 1.9 1.5 36 61 53 77 50 80 0.82 C2HE / C2H2 / C2HC zinc-binding finger zf-C2HE PF16278.5 64 ZNF569-203 - 527 6.6e-13 48.9 98.3 3 18 0.0033 1.9 9.0 1.7 34 57 79 101 67 108 0.81 C2HE / C2H2 / C2HC zinc-binding finger zf-C2HE PF16278.5 64 ZNF569-203 - 527 6.6e-13 48.9 98.3 4 18 1.1 6.4e+02 0.9 0.7 36 50 109 123 102 134 0.80 C2HE / C2H2 / C2HC zinc-binding finger zf-C2HE PF16278.5 64 ZNF569-203 - 527 6.6e-13 48.9 98.3 5 18 0.059 35 4.9 1.0 35 57 136 157 122 163 0.72 C2HE / C2H2 / C2HC zinc-binding finger zf-C2HE PF16278.5 64 ZNF569-203 - 527 6.6e-13 48.9 98.3 6 18 0.0056 3.3 8.2 0.1 35 62 164 190 156 192 0.88 C2HE / C2H2 / C2HC zinc-binding finger zf-C2HE PF16278.5 64 ZNF569-203 - 527 6.6e-13 48.9 98.3 7 18 0.0033 2 8.9 0.1 36 61 193 217 190 220 0.90 C2HE / C2H2 / C2HC zinc-binding finger zf-C2HE PF16278.5 64 ZNF569-203 - 527 6.6e-13 48.9 98.3 8 18 0.018 11 6.6 0.3 36 61 221 245 217 248 0.85 C2HE / C2H2 / C2HC zinc-binding finger zf-C2HE PF16278.5 64 ZNF569-203 - 527 6.6e-13 48.9 98.3 9 18 5.4 3.2e+03 -1.3 1.3 35 48 248 261 244 273 0.82 C2HE / C2H2 / C2HC zinc-binding finger zf-C2HE PF16278.5 64 ZNF569-203 - 527 6.6e-13 48.9 98.3 10 18 0.0033 2 9.0 0.7 33 57 274 297 257 304 0.81 C2HE / C2H2 / C2HC zinc-binding finger zf-C2HE PF16278.5 64 ZNF569-203 - 527 6.6e-13 48.9 98.3 11 18 0.73 4.4e+02 1.4 0.3 36 51 305 319 301 331 0.75 C2HE / C2H2 / C2HC zinc-binding finger zf-C2HE PF16278.5 64 ZNF569-203 - 527 6.6e-13 48.9 98.3 12 18 0.14 83 3.7 1.1 35 49 332 346 319 357 0.82 C2HE / C2H2 / C2HC zinc-binding finger zf-C2HE PF16278.5 64 ZNF569-203 - 527 6.6e-13 48.9 98.3 13 18 8.3e-05 0.05 14.1 0.3 35 62 360 386 347 388 0.89 C2HE / C2H2 / C2HC zinc-binding finger zf-C2HE PF16278.5 64 ZNF569-203 - 527 6.6e-13 48.9 98.3 14 18 0.28 1.7e+02 2.8 1.5 36 61 389 413 387 416 0.88 C2HE / C2H2 / C2HC zinc-binding finger zf-C2HE PF16278.5 64 ZNF569-203 - 527 6.6e-13 48.9 98.3 15 18 0.061 36 4.9 0.1 36 61 417 441 414 444 0.77 C2HE / C2H2 / C2HC zinc-binding finger zf-C2HE PF16278.5 64 ZNF569-203 - 527 6.6e-13 48.9 98.3 16 18 0.0091 5.4 7.5 0.2 35 61 444 469 438 472 0.85 C2HE / C2H2 / C2HC zinc-binding finger zf-C2HE PF16278.5 64 ZNF569-203 - 527 6.6e-13 48.9 98.3 17 18 0.00094 0.56 10.7 0.5 36 62 473 498 470 500 0.92 C2HE / C2H2 / C2HC zinc-binding finger zf-C2HE PF16278.5 64 ZNF569-203 - 527 6.6e-13 48.9 98.3 18 18 0.32 1.9e+02 2.6 0.4 36 49 501 514 498 523 0.74 C2HE / C2H2 / C2HC zinc-binding finger XPA_N PF01286.18 32 ZNF569-203 - 527 1.5e-12 47.3 84.2 1 18 0.1 62 3.7 0.1 3 13 28 38 26 40 0.87 XPA protein N-terminal XPA_N PF01286.18 32 ZNF569-203 - 527 1.5e-12 47.3 84.2 2 18 0.96 5.7e+02 0.7 0.1 3 12 56 65 54 75 0.84 XPA protein N-terminal XPA_N PF01286.18 32 ZNF569-203 - 527 1.5e-12 47.3 84.2 3 18 0.026 15 5.7 0.1 3 11 84 92 83 98 0.91 XPA protein N-terminal XPA_N PF01286.18 32 ZNF569-203 - 527 1.5e-12 47.3 84.2 4 18 0.047 28 4.8 0.2 4 12 113 121 110 129 0.83 XPA protein N-terminal XPA_N PF01286.18 32 ZNF569-203 - 527 1.5e-12 47.3 84.2 5 18 0.021 13 6.0 0.3 3 12 140 149 138 152 0.88 XPA protein N-terminal XPA_N PF01286.18 32 ZNF569-203 - 527 1.5e-12 47.3 84.2 6 18 0.052 31 4.7 0.1 4 12 169 177 166 178 0.88 XPA protein N-terminal XPA_N PF01286.18 32 ZNF569-203 - 527 1.5e-12 47.3 84.2 7 18 0.011 6.7 6.8 0.2 3 12 196 205 194 209 0.90 XPA protein N-terminal XPA_N PF01286.18 32 ZNF569-203 - 527 1.5e-12 47.3 84.2 8 18 0.0031 1.8 8.6 0.2 3 14 224 235 222 239 0.91 XPA protein N-terminal XPA_N PF01286.18 32 ZNF569-203 - 527 1.5e-12 47.3 84.2 9 18 0.086 51 4.0 0.3 3 12 252 261 250 262 0.88 XPA protein N-terminal XPA_N PF01286.18 32 ZNF569-203 - 527 1.5e-12 47.3 84.2 10 18 0.021 13 5.9 0.1 3 12 280 289 278 295 0.89 XPA protein N-terminal XPA_N PF01286.18 32 ZNF569-203 - 527 1.5e-12 47.3 84.2 11 18 0.016 9.5 6.4 0.1 3 12 308 317 306 322 0.89 XPA protein N-terminal XPA_N PF01286.18 32 ZNF569-203 - 527 1.5e-12 47.3 84.2 12 18 0.022 13 5.9 0.3 3 12 336 345 334 347 0.88 XPA protein N-terminal XPA_N PF01286.18 32 ZNF569-203 - 527 1.5e-12 47.3 84.2 13 18 0.028 17 5.6 0.2 3 12 364 373 362 374 0.88 XPA protein N-terminal XPA_N PF01286.18 32 ZNF569-203 - 527 1.5e-12 47.3 84.2 14 18 0.0089 5.3 7.2 1.3 3 17 392 406 390 408 0.84 XPA protein N-terminal XPA_N PF01286.18 32 ZNF569-203 - 527 1.5e-12 47.3 84.2 15 18 0.028 17 5.6 0.1 3 12 420 429 418 430 0.87 XPA protein N-terminal XPA_N PF01286.18 32 ZNF569-203 - 527 1.5e-12 47.3 84.2 16 18 0.0098 5.9 7.0 0.3 3 14 448 459 446 463 0.91 XPA protein N-terminal XPA_N PF01286.18 32 ZNF569-203 - 527 1.5e-12 47.3 84.2 17 18 0.11 68 3.6 0.3 3 12 476 485 474 487 0.89 XPA protein N-terminal XPA_N PF01286.18 32 ZNF569-203 - 527 1.5e-12 47.3 84.2 18 18 0.0098 5.8 7.0 0.0 3 12 504 513 502 521 0.83 XPA protein N-terminal zf-C2H2_11 PF16622.5 29 ZNF569-203 - 527 6.8e-11 41.7 85.7 1 18 0.00039 0.23 11.2 0.3 5 26 27 48 25 49 0.94 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF569-203 - 527 6.8e-11 41.7 85.7 2 18 1.7 1e+03 -0.4 0.3 7 26 57 76 54 77 0.86 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF569-203 - 527 6.8e-11 41.7 85.7 3 18 0.0037 2.2 8.1 0.3 3 26 81 104 80 105 0.89 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF569-203 - 527 6.8e-11 41.7 85.7 4 18 7.2 4.3e+03 -2.4 0.1 7 15 113 121 111 129 0.78 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF569-203 - 527 6.8e-11 41.7 85.7 5 18 0.024 14 5.5 0.1 6 23 140 157 137 161 0.87 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF569-203 - 527 6.8e-11 41.7 85.7 6 18 0.034 20 5.0 0.0 7 25 169 187 166 188 0.93 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF569-203 - 527 6.8e-11 41.7 85.7 7 18 0.01 6.3 6.7 0.1 5 26 195 216 192 217 0.91 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF569-203 - 527 6.8e-11 41.7 85.7 8 18 0.0065 3.9 7.3 0.1 6 25 224 243 221 244 0.92 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF569-203 - 527 6.8e-11 41.7 85.7 9 18 7.7 4.6e+03 -2.5 0.3 7 14 253 260 251 262 0.70 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF569-203 - 527 6.8e-11 41.7 85.7 10 18 0.056 33 4.3 0.1 6 26 280 300 277 301 0.88 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF569-203 - 527 6.8e-11 41.7 85.7 11 18 0.28 1.7e+02 2.1 0.1 7 17 309 319 307 328 0.79 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF569-203 - 527 6.8e-11 41.7 85.7 12 18 0.39 2.3e+02 1.6 0.2 6 15 336 345 333 348 0.87 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF569-203 - 527 6.8e-11 41.7 85.7 13 18 0.0034 2 8.2 0.1 7 25 365 383 362 384 0.93 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF569-203 - 527 6.8e-11 41.7 85.7 14 18 0.1 63 3.5 1.0 6 25 392 411 389 412 0.85 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF569-203 - 527 6.8e-11 41.7 85.7 15 18 0.0072 4.3 7.2 0.1 7 25 421 439 419 439 0.93 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF569-203 - 527 6.8e-11 41.7 85.7 16 18 0.011 6.3 6.6 0.2 6 24 448 466 445 467 0.89 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF569-203 - 527 6.8e-11 41.7 85.7 17 18 0.0041 2.5 8.0 0.4 7 25 477 495 474 495 0.94 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF569-203 - 527 6.8e-11 41.7 85.7 18 18 0.0024 1.4 8.7 2.4 6 26 504 524 501 527 0.92 zinc-finger C2H2-type zf_C2H2_13 PF18508.1 42 ZNF569-203 - 527 8.2e-09 34.9 56.8 1 16 0.061 36 4.0 0.2 20 39 29 49 27 51 0.76 Zinc finger domain zf_C2H2_13 PF18508.1 42 ZNF569-203 - 527 8.2e-09 34.9 56.8 2 16 0.021 12 5.5 0.2 20 38 85 104 66 107 0.85 Zinc finger domain zf_C2H2_13 PF18508.1 42 ZNF569-203 - 527 8.2e-09 34.9 56.8 3 16 1.9 1.1e+03 -0.7 0.2 20 39 113 133 112 134 0.78 Zinc finger domain zf_C2H2_13 PF18508.1 42 ZNF569-203 - 527 8.2e-09 34.9 56.8 4 16 0.019 11 5.7 0.1 20 39 141 161 140 163 0.80 Zinc finger domain zf_C2H2_13 PF18508.1 42 ZNF569-203 - 527 8.2e-09 34.9 56.8 5 16 0.1 62 3.3 0.0 20 26 169 175 167 190 0.76 Zinc finger domain zf_C2H2_13 PF18508.1 42 ZNF569-203 - 527 8.2e-09 34.9 56.8 6 16 0.13 76 3.0 0.1 20 36 197 214 195 218 0.69 Zinc finger domain zf_C2H2_13 PF18508.1 42 ZNF569-203 - 527 8.2e-09 34.9 56.8 7 16 0.028 17 5.1 0.0 20 39 225 245 224 247 0.75 Zinc finger domain zf_C2H2_13 PF18508.1 42 ZNF569-203 - 527 8.2e-09 34.9 56.8 8 16 0.03 18 5.0 0.1 20 38 281 300 280 303 0.81 Zinc finger domain zf_C2H2_13 PF18508.1 42 ZNF569-203 - 527 8.2e-09 34.9 56.8 9 16 0.021 13 5.5 0.1 19 35 308 325 306 330 0.76 Zinc finger domain zf_C2H2_13 PF18508.1 42 ZNF569-203 - 527 8.2e-09 34.9 56.8 10 16 0.12 70 3.1 0.1 20 27 337 344 336 357 0.83 Zinc finger domain zf_C2H2_13 PF18508.1 42 ZNF569-203 - 527 8.2e-09 34.9 56.8 11 16 0.027 16 5.2 0.1 20 39 365 385 364 387 0.81 Zinc finger domain zf_C2H2_13 PF18508.1 42 ZNF569-203 - 527 8.2e-09 34.9 56.8 12 16 0.16 98 2.7 0.3 20 33 393 406 392 414 0.75 Zinc finger domain zf_C2H2_13 PF18508.1 42 ZNF569-203 - 527 8.2e-09 34.9 56.8 13 16 0.0034 2 8.0 0.0 19 39 420 441 418 442 0.77 Zinc finger domain zf_C2H2_13 PF18508.1 42 ZNF569-203 - 527 8.2e-09 34.9 56.8 14 16 0.026 15 5.2 0.1 20 29 449 458 448 470 0.72 Zinc finger domain zf_C2H2_13 PF18508.1 42 ZNF569-203 - 527 8.2e-09 34.9 56.8 15 16 0.15 88 2.8 0.1 20 39 477 497 477 499 0.81 Zinc finger domain zf_C2H2_13 PF18508.1 42 ZNF569-203 - 527 8.2e-09 34.9 56.8 16 16 2.2 1.3e+03 -0.9 0.2 20 31 505 516 504 525 0.71 Zinc finger domain C1_1 PF00130.22 53 ZNF569-203 - 527 3.1e-08 33.4 72.2 1 17 0.0016 0.94 9.4 1.5 9 38 24 64 19 68 0.82 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF569-203 - 527 3.1e-08 33.4 72.2 2 17 0.0031 1.8 8.5 1.8 9 36 52 90 45 95 0.83 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF569-203 - 527 3.1e-08 33.4 72.2 3 17 0.0083 5 7.1 3.2 2 37 73 119 72 123 0.81 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF569-203 - 527 3.1e-08 33.4 72.2 4 17 0.019 11 6.0 2.7 5 37 105 147 101 151 0.76 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF569-203 - 527 3.1e-08 33.4 72.2 5 17 0.023 14 5.7 1.8 9 36 136 174 129 176 0.75 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF569-203 - 527 3.1e-08 33.4 72.2 6 17 0.0021 1.3 9.0 0.9 4 36 160 202 157 204 0.83 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF569-203 - 527 3.1e-08 33.4 72.2 7 17 0.0044 2.6 8.0 1.3 6 36 189 230 185 235 0.79 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF569-203 - 527 3.1e-08 33.4 72.2 8 17 0.0049 3 7.8 1.0 9 38 220 260 213 264 0.80 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF569-203 - 527 3.1e-08 33.4 72.2 9 17 0.32 1.9e+02 2.0 2.9 6 22 245 267 241 284 0.63 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF569-203 - 527 3.1e-08 33.4 72.2 10 17 0.055 33 4.5 2.6 4 37 272 315 269 319 0.71 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF569-203 - 527 3.1e-08 33.4 72.2 11 17 0.025 15 5.6 2.1 6 37 302 343 297 347 0.76 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF569-203 - 527 3.1e-08 33.4 72.2 12 17 0.032 19 5.2 1.4 9 36 332 370 325 372 0.74 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF569-203 - 527 3.1e-08 33.4 72.2 13 17 0.0092 5.5 7.0 1.3 4 37 356 399 353 404 0.81 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF569-203 - 527 3.1e-08 33.4 72.2 14 17 0.014 8.6 6.3 1.3 7 37 386 427 381 431 0.79 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF569-203 - 527 3.1e-08 33.4 72.2 15 17 0.0043 2.6 8.0 0.4 6 37 413 455 409 459 0.82 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF569-203 - 527 3.1e-08 33.4 72.2 16 17 0.0071 4.2 7.3 0.5 9 36 444 482 437 486 0.85 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF569-203 - 527 3.1e-08 33.4 72.2 17 17 0.1 63 3.6 0.3 6 25 497 516 493 522 0.73 Phorbol esters/diacylglycerol binding domain (C1 domain) # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF569-203.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF569-203.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF569-203.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF569-203.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF569-203.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:09:25 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF569-204.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF569-204.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF569-204.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF569-204.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF569-204.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:09:25 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- KRAB PF01352.27 42 ZNF569-205 - 104 3.2e-26 90.7 1.2 1 2 1.1e-29 4.9e-26 90.1 0.1 2 42 32 72 31 72 0.98 KRAB box KRAB PF01352.27 42 ZNF569-205 - 104 3.2e-26 90.7 1.2 2 2 0.57 2.6e+03 -1.8 0.2 6 15 79 88 76 95 0.78 KRAB box # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF569-205.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF569-205.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF569-205.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF569-205.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF569-205.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:09:25 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF569-206.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF569-206.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF569-206.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF569-206.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF569-206.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:09:26 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF569-207.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF569-207.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF569-207.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF569-207.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF569-207.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:09:26 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF569-208.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF569-208.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF569-208.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF569-208.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF569-208.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:09:27 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZNF570-201 - 536 2.7e-100 324.7 69.5 1 12 0.054 51 4.5 1.1 12 25 215 228 211 229 0.85 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF570-201 - 536 2.7e-100 324.7 69.5 2 12 1e-11 9.8e-09 35.3 0.2 2 25 233 256 232 257 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF570-201 - 536 2.7e-100 324.7 69.5 3 12 5e-13 4.7e-10 39.4 0.4 1 25 260 284 260 285 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF570-201 - 536 2.7e-100 324.7 69.5 4 12 4.6e-13 4.3e-10 39.5 1.2 1 25 288 312 288 313 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF570-201 - 536 2.7e-100 324.7 69.5 5 12 2.2e-12 2.1e-09 37.4 0.2 2 26 317 341 316 341 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF570-201 - 536 2.7e-100 324.7 69.5 6 12 3.7e-11 3.5e-08 33.5 0.2 4 25 347 368 345 368 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF570-201 - 536 2.7e-100 324.7 69.5 7 12 1.7e-11 1.6e-08 34.6 0.4 2 25 373 396 372 397 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF570-201 - 536 2.7e-100 324.7 69.5 8 12 1.4e-11 1.3e-08 34.8 1.3 1 25 400 424 400 425 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF570-201 - 536 2.7e-100 324.7 69.5 9 12 2.2e-12 2.1e-09 37.4 0.2 2 26 429 453 428 453 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF570-201 - 536 2.7e-100 324.7 69.5 10 12 1.3e-12 1.2e-09 38.1 0.4 1 25 456 480 456 481 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF570-201 - 536 2.7e-100 324.7 69.5 11 12 3.1e-11 2.9e-08 33.8 0.9 2 25 485 508 484 509 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF570-201 - 536 2.7e-100 324.7 69.5 12 12 0.42 4e+02 1.7 0.3 1 13 512 524 512 531 0.85 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZNF570-201 - 536 9.9e-61 199.0 71.7 1 11 1.1e-08 1e-05 25.7 0.7 2 23 219 240 218 240 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF570-201 - 536 9.9e-61 199.0 71.7 2 11 3.5e-08 3.3e-05 24.1 0.4 1 23 246 268 246 268 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF570-201 - 536 9.9e-61 199.0 71.7 3 11 5.1e-08 4.8e-05 23.6 1.2 1 23 274 296 274 296 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF570-201 - 536 9.9e-61 199.0 71.7 4 11 9.4e-07 0.00089 19.6 0.6 1 23 302 324 302 324 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF570-201 - 536 9.9e-61 199.0 71.7 5 11 4.6e-06 0.0044 17.4 0.1 1 23 330 352 330 352 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF570-201 - 536 9.9e-61 199.0 71.7 6 11 1.2e-07 0.00011 22.4 0.2 1 23 358 380 358 380 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF570-201 - 536 9.9e-61 199.0 71.7 7 11 1.2e-09 1.1e-06 28.7 0.9 1 23 386 408 386 408 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF570-201 - 536 9.9e-61 199.0 71.7 8 11 8.4e-07 0.0008 19.7 0.4 1 23 414 436 414 436 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF570-201 - 536 9.9e-61 199.0 71.7 9 11 1.1e-06 0.001 19.4 0.2 1 23 442 464 442 464 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF570-201 - 536 9.9e-61 199.0 71.7 10 11 8.4e-08 8e-05 22.9 0.7 1 23 470 492 470 492 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF570-201 - 536 9.9e-61 199.0 71.7 11 11 9.3e-07 0.00087 19.6 6.5 1 23 498 520 498 520 0.98 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZNF570-201 - 536 6.7e-33 110.5 73.0 1 11 0.00031 0.29 12.1 0.7 2 23 219 240 218 241 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF570-201 - 536 6.7e-33 110.5 73.0 2 11 2.2e-05 0.02 15.7 0.4 1 23 246 268 246 269 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF570-201 - 536 6.7e-33 110.5 73.0 3 11 2.7e-05 0.026 15.4 1.4 1 23 274 296 274 297 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF570-201 - 536 6.7e-33 110.5 73.0 4 11 0.00015 0.14 13.0 0.9 1 23 302 324 302 325 0.89 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF570-201 - 536 6.7e-33 110.5 73.0 5 11 7.5e-05 0.071 14.0 0.2 1 23 330 352 330 353 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF570-201 - 536 6.7e-33 110.5 73.0 6 11 0.00014 0.14 13.1 0.2 1 23 358 380 358 381 0.83 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF570-201 - 536 6.7e-33 110.5 73.0 7 11 1.2e-05 0.011 16.5 1.0 1 23 386 408 386 409 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF570-201 - 536 6.7e-33 110.5 73.0 8 11 0.00024 0.23 12.4 0.5 1 23 414 436 414 437 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF570-201 - 536 6.7e-33 110.5 73.0 9 11 2.7e-05 0.026 15.3 0.2 1 23 442 464 442 465 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF570-201 - 536 6.7e-33 110.5 73.0 10 11 5.2e-06 0.0049 17.6 1.0 1 23 470 492 470 493 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF570-201 - 536 6.7e-33 110.5 73.0 11 11 0.00035 0.33 11.9 4.4 1 23 498 520 498 521 0.94 C2H2-type zinc finger KRAB PF01352.27 42 ZNF570-201 - 536 1.3e-24 85.5 0.3 1 2 1.4e-27 1.3e-24 85.5 0.3 1 42 13 54 13 54 0.99 KRAB box KRAB PF01352.27 42 ZNF570-201 - 536 1.3e-24 85.5 0.3 2 2 4.6 4.3e+03 -2.5 0.4 13 18 126 131 125 131 0.87 KRAB box zf-C2H2_jaz PF12171.8 27 ZNF570-201 - 536 8.5e-14 51.4 53.5 1 11 0.065 61 4.1 0.3 3 22 219 238 218 238 0.89 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF570-201 - 536 8.5e-14 51.4 53.5 2 11 0.00094 0.89 9.9 0.1 2 22 246 266 245 266 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF570-201 - 536 8.5e-14 51.4 53.5 3 11 0.00079 0.74 10.2 0.5 2 22 274 294 273 294 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF570-201 - 536 8.5e-14 51.4 53.5 4 11 0.03 28 5.1 0.5 2 12 302 312 301 321 0.91 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF570-201 - 536 8.5e-14 51.4 53.5 5 11 0.00028 0.27 11.6 0.1 2 22 330 350 329 350 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF570-201 - 536 8.5e-14 51.4 53.5 6 11 0.32 3e+02 1.9 0.1 2 12 358 368 357 378 0.82 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF570-201 - 536 8.5e-14 51.4 53.5 7 11 0.0052 4.9 7.6 0.5 2 22 386 406 385 406 0.91 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF570-201 - 536 8.5e-14 51.4 53.5 8 11 0.011 11 6.5 0.5 2 21 414 433 413 434 0.84 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF570-201 - 536 8.5e-14 51.4 53.5 9 11 3.9e-06 0.0037 17.5 0.1 2 22 442 462 441 462 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF570-201 - 536 8.5e-14 51.4 53.5 10 11 0.15 1.5e+02 2.9 0.5 2 12 470 480 469 488 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF570-201 - 536 8.5e-14 51.4 53.5 11 11 0.0057 5.3 7.4 1.0 2 12 498 508 497 518 0.80 Zinc-finger double-stranded RNA-binding Zn-ribbon_8 PF09723.10 40 ZNF570-201 - 536 3.5e-08 33.4 57.2 1 11 0.00084 0.79 9.9 2.6 7 35 219 254 218 258 0.87 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF570-201 - 536 3.5e-08 33.4 57.2 2 11 0.00047 0.44 10.7 4.1 6 34 246 281 245 286 0.90 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF570-201 - 536 3.5e-08 33.4 57.2 3 11 0.049 46 4.2 6.0 6 34 274 309 273 314 0.79 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF570-201 - 536 3.5e-08 33.4 57.2 4 11 0.0072 6.8 6.9 4.1 6 35 302 338 301 342 0.89 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF570-201 - 536 3.5e-08 33.4 57.2 5 11 0.00017 0.16 12.1 1.8 6 34 330 365 328 371 0.85 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF570-201 - 536 3.5e-08 33.4 57.2 6 11 1.3e-05 0.013 15.6 2.4 6 35 358 394 357 398 0.92 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF570-201 - 536 3.5e-08 33.4 57.2 7 11 0.00015 0.14 12.3 5.2 6 35 386 422 385 427 0.90 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF570-201 - 536 3.5e-08 33.4 57.2 8 11 0.0008 0.75 10.0 3.9 6 34 414 449 412 453 0.90 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF570-201 - 536 3.5e-08 33.4 57.2 9 11 0.00067 0.63 10.2 3.0 6 34 442 477 441 481 0.91 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF570-201 - 536 3.5e-08 33.4 57.2 10 11 0.0011 1 9.5 6.3 6 37 470 508 469 511 0.91 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF570-201 - 536 3.5e-08 33.4 57.2 11 11 0.022 21 5.3 1.1 6 17 498 509 497 516 0.84 Zinc ribbon domain zf-C2H2_6 PF13912.6 27 ZNF570-201 - 536 8.3e-08 32.0 81.3 1 12 0.15 1.4e+02 2.6 0.6 3 18 219 234 219 241 0.76 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF570-201 - 536 8.3e-08 32.0 81.3 2 12 0.019 18 5.5 0.3 2 12 246 256 246 268 0.83 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF570-201 - 536 8.3e-08 32.0 81.3 3 12 0.0042 4 7.6 0.5 2 12 274 284 274 296 0.90 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF570-201 - 536 8.3e-08 32.0 81.3 4 12 0.0036 3.4 7.8 0.6 2 12 302 312 302 324 0.88 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF570-201 - 536 8.3e-08 32.0 81.3 5 12 0.021 20 5.3 0.3 2 12 330 340 330 341 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF570-201 - 536 8.3e-08 32.0 81.3 6 12 0.0012 1.1 9.3 0.5 2 12 358 368 358 368 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF570-201 - 536 8.3e-08 32.0 81.3 7 12 0.0035 3.3 7.8 3.5 2 12 386 396 386 407 0.87 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF570-201 - 536 8.3e-08 32.0 81.3 8 12 0.0054 5.1 7.2 0.3 2 12 414 424 414 436 0.89 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF570-201 - 536 8.3e-08 32.0 81.3 9 12 0.0082 7.7 6.6 0.3 2 20 442 460 442 466 0.78 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF570-201 - 536 8.3e-08 32.0 81.3 10 12 0.00014 0.13 12.3 1.8 2 21 470 489 470 494 0.84 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF570-201 - 536 8.3e-08 32.0 81.3 11 12 0.00043 0.41 10.7 2.2 2 12 498 508 498 509 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF570-201 - 536 8.3e-08 32.0 81.3 12 12 5.3 5e+03 -2.3 0.7 20 26 512 518 511 519 0.82 C2H2-type zinc finger # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF570-201.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF570-201.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF570-201.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF570-201.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF570-201.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:09:27 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZNF570-202 - 592 2.3e-100 324.9 67.3 1 12 0.033 33 5.1 0.3 12 25 271 284 269 285 0.84 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF570-202 - 592 2.3e-100 324.9 67.3 2 12 1.1e-11 1.1e-08 35.1 0.2 2 25 289 312 288 313 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF570-202 - 592 2.3e-100 324.9 67.3 3 12 5.3e-13 5.3e-10 39.3 0.4 1 25 316 340 316 341 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF570-202 - 592 2.3e-100 324.9 67.3 4 12 4.9e-13 4.9e-10 39.4 1.2 1 25 344 368 344 369 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF570-202 - 592 2.3e-100 324.9 67.3 5 12 2.4e-12 2.4e-09 37.2 0.2 2 26 373 397 372 397 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF570-202 - 592 2.3e-100 324.9 67.3 6 12 3.9e-11 3.9e-08 33.4 0.2 4 25 403 424 401 424 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF570-202 - 592 2.3e-100 324.9 67.3 7 12 1.8e-11 1.8e-08 34.5 0.4 2 25 429 452 428 453 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF570-202 - 592 2.3e-100 324.9 67.3 8 12 1.5e-11 1.5e-08 34.7 1.3 1 25 456 480 456 481 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF570-202 - 592 2.3e-100 324.9 67.3 9 12 2.4e-12 2.4e-09 37.2 0.2 2 26 485 509 484 509 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF570-202 - 592 2.3e-100 324.9 67.3 10 12 1.4e-12 1.4e-09 38.0 0.4 1 25 512 536 512 537 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF570-202 - 592 2.3e-100 324.9 67.3 11 12 3.3e-11 3.3e-08 33.6 0.9 2 25 541 564 540 565 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF570-202 - 592 2.3e-100 324.9 67.3 12 12 0.45 4.4e+02 1.6 0.3 1 13 568 580 568 587 0.85 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZNF570-202 - 592 3.6e-60 197.2 71.7 1 11 1.2e-08 1.2e-05 25.5 0.7 2 23 275 296 274 296 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF570-202 - 592 3.6e-60 197.2 71.7 2 11 3.7e-08 3.7e-05 23.9 0.4 1 23 302 324 302 324 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF570-202 - 592 3.6e-60 197.2 71.7 3 11 5.5e-08 5.5e-05 23.4 1.2 1 23 330 352 330 352 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF570-202 - 592 3.6e-60 197.2 71.7 4 11 1e-06 0.001 19.4 0.6 1 23 358 380 358 380 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF570-202 - 592 3.6e-60 197.2 71.7 5 11 4.9e-06 0.0049 17.2 0.1 1 23 386 408 386 408 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF570-202 - 592 3.6e-60 197.2 71.7 6 11 1.2e-07 0.00012 22.3 0.2 1 23 414 436 414 436 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF570-202 - 592 3.6e-60 197.2 71.7 7 11 1.3e-09 1.3e-06 28.5 0.9 1 23 442 464 442 464 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF570-202 - 592 3.6e-60 197.2 71.7 8 11 9e-07 0.00089 19.6 0.4 1 23 470 492 470 492 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF570-202 - 592 3.6e-60 197.2 71.7 9 11 1.2e-06 0.0011 19.2 0.2 1 23 498 520 498 520 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF570-202 - 592 3.6e-60 197.2 71.7 10 11 9e-08 9e-05 22.7 0.7 1 23 526 548 526 548 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF570-202 - 592 3.6e-60 197.2 71.7 11 11 9.9e-07 0.00098 19.5 6.5 1 23 554 576 554 576 0.98 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZNF570-202 - 592 2.5e-32 108.8 73.0 1 11 0.00033 0.33 11.9 0.7 2 23 275 296 274 297 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF570-202 - 592 2.5e-32 108.8 73.0 2 11 2.3e-05 0.023 15.5 0.4 1 23 302 324 302 325 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF570-202 - 592 2.5e-32 108.8 73.0 3 11 2.9e-05 0.029 15.2 1.4 1 23 330 352 330 353 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF570-202 - 592 2.5e-32 108.8 73.0 4 11 0.00016 0.16 12.9 0.9 1 23 358 380 358 381 0.89 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF570-202 - 592 2.5e-32 108.8 73.0 5 11 8e-05 0.08 13.8 0.2 1 23 386 408 386 409 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF570-202 - 592 2.5e-32 108.8 73.0 6 11 0.00015 0.15 12.9 0.2 1 23 414 436 414 437 0.83 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF570-202 - 592 2.5e-32 108.8 73.0 7 11 1.3e-05 0.013 16.3 1.0 1 23 442 464 442 465 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF570-202 - 592 2.5e-32 108.8 73.0 8 11 0.00026 0.25 12.3 0.5 1 23 470 492 470 493 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF570-202 - 592 2.5e-32 108.8 73.0 9 11 2.9e-05 0.029 15.2 0.2 1 23 498 520 498 521 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF570-202 - 592 2.5e-32 108.8 73.0 10 11 5.6e-06 0.0055 17.4 1.0 1 23 526 548 526 549 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF570-202 - 592 2.5e-32 108.8 73.0 11 11 0.00038 0.37 11.7 4.4 1 23 554 576 554 577 0.94 C2H2-type zinc finger KRAB PF01352.27 42 ZNF570-202 - 592 1.5e-24 85.4 0.3 1 2 1.5e-27 1.5e-24 85.4 0.3 1 42 69 110 69 110 0.99 KRAB box KRAB PF01352.27 42 ZNF570-202 - 592 1.5e-24 85.4 0.3 2 2 7.4 7.3e+03 -3.3 0.7 13 18 182 187 182 187 0.87 KRAB box zf-C2H2_jaz PF12171.8 27 ZNF570-202 - 592 2.9e-13 49.7 53.5 1 11 0.069 68 3.9 0.3 3 22 275 294 274 294 0.89 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF570-202 - 592 2.9e-13 49.7 53.5 2 11 0.001 1 9.8 0.1 2 22 302 322 301 322 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF570-202 - 592 2.9e-13 49.7 53.5 3 11 0.00084 0.83 10.0 0.5 2 22 330 350 329 350 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF570-202 - 592 2.9e-13 49.7 53.5 4 11 0.032 32 5.0 0.5 2 12 358 368 357 377 0.91 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF570-202 - 592 2.9e-13 49.7 53.5 5 11 0.0003 0.3 11.4 0.1 2 22 386 406 385 406 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF570-202 - 592 2.9e-13 49.7 53.5 6 11 0.33 3.3e+02 1.7 0.1 2 12 414 424 413 434 0.82 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF570-202 - 592 2.9e-13 49.7 53.5 7 11 0.0055 5.5 7.4 0.5 2 22 442 462 441 462 0.91 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF570-202 - 592 2.9e-13 49.7 53.5 8 11 0.012 12 6.3 0.5 2 21 470 489 469 490 0.84 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF570-202 - 592 2.9e-13 49.7 53.5 9 11 4.2e-06 0.0042 17.3 0.1 2 22 498 518 497 518 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF570-202 - 592 2.9e-13 49.7 53.5 10 11 0.16 1.6e+02 2.7 0.5 2 12 526 536 525 544 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF570-202 - 592 2.9e-13 49.7 53.5 11 11 0.006 6 7.3 1.0 2 12 554 564 553 574 0.80 Zinc-finger double-stranded RNA-binding Zn-ribbon_8 PF09723.10 40 ZNF570-202 - 592 4.5e-08 33.1 56.3 1 10 0.00072 0.71 10.0 2.4 7 36 275 311 274 315 0.87 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF570-202 - 592 4.5e-08 33.1 56.3 2 10 0.00047 0.46 10.6 4.0 6 34 302 337 301 342 0.90 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF570-202 - 592 4.5e-08 33.1 56.3 3 10 0.05 50 4.1 5.9 6 34 330 365 329 370 0.79 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF570-202 - 592 4.5e-08 33.1 56.3 4 10 0.0078 7.7 6.7 4.1 6 35 358 394 357 398 0.89 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF570-202 - 592 4.5e-08 33.1 56.3 5 10 0.00044 0.43 10.7 7.3 6 35 414 450 384 454 0.90 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF570-202 - 592 4.5e-08 33.1 56.3 6 10 0.0002 0.2 11.8 5.4 6 35 442 478 441 482 0.90 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF570-202 - 592 4.5e-08 33.1 56.3 7 10 0.00077 0.77 9.9 3.8 6 35 470 506 469 510 0.90 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF570-202 - 592 4.5e-08 33.1 56.3 8 10 0.00061 0.61 10.3 2.8 6 34 498 533 497 537 0.91 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF570-202 - 592 4.5e-08 33.1 56.3 9 10 0.0011 1.1 9.5 6.1 6 37 526 564 525 567 0.91 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF570-202 - 592 4.5e-08 33.1 56.3 10 10 0.025 24 5.1 1.0 6 17 554 565 553 571 0.85 Zinc ribbon domain zf-C2H2_6 PF13912.6 27 ZNF570-202 - 592 3.1e-07 30.2 81.2 1 12 0.16 1.6e+02 2.4 0.6 3 18 275 290 275 297 0.76 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF570-202 - 592 3.1e-07 30.2 81.2 2 12 0.02 20 5.3 0.3 2 12 302 312 302 324 0.83 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF570-202 - 592 3.1e-07 30.2 81.2 3 12 0.0045 4.4 7.4 0.5 2 12 330 340 330 352 0.90 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF570-202 - 592 3.1e-07 30.2 81.2 4 12 0.0038 3.8 7.6 0.6 2 12 358 368 358 380 0.88 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF570-202 - 592 3.1e-07 30.2 81.2 5 12 0.023 23 5.1 0.3 2 12 386 396 386 397 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF570-202 - 592 3.1e-07 30.2 81.2 6 12 0.0012 1.2 9.2 0.5 2 12 414 424 414 424 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF570-202 - 592 3.1e-07 30.2 81.2 7 12 0.0036 3.5 7.7 3.5 2 12 442 452 442 463 0.88 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF570-202 - 592 3.1e-07 30.2 81.2 8 12 0.0057 5.7 7.1 0.3 2 12 470 480 470 492 0.89 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF570-202 - 592 3.1e-07 30.2 81.2 9 12 0.0087 8.7 6.5 0.3 2 20 498 516 498 522 0.78 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF570-202 - 592 3.1e-07 30.2 81.2 10 12 0.00015 0.15 12.1 1.8 2 21 526 545 526 550 0.84 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF570-202 - 592 3.1e-07 30.2 81.2 11 12 0.00045 0.45 10.6 2.2 2 12 554 564 554 565 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF570-202 - 592 3.1e-07 30.2 81.2 12 12 5.6 5.6e+03 -2.5 0.7 20 26 568 574 567 575 0.82 C2H2-type zinc finger # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF570-202.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF570-202.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF570-202.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF570-202.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF570-202.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:09:28 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF570-203.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF570-203.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF570-203.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF570-203.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF570-203.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:09:28 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZNF570-204 - 333 9.2e-104 335.7 67.3 1 12 0.025 17 6.1 0.3 12 25 12 25 10 26 0.84 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF570-204 - 333 9.2e-104 335.7 67.3 2 12 7.8e-12 5.4e-09 36.1 0.2 2 25 30 53 29 54 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF570-204 - 333 9.2e-104 335.7 67.3 3 12 3.8e-13 2.6e-10 40.2 0.4 1 25 57 81 57 82 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF570-204 - 333 9.2e-104 335.7 67.3 4 12 3.5e-13 2.4e-10 40.4 1.2 1 25 85 109 85 110 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF570-204 - 333 9.2e-104 335.7 67.3 5 12 1.7e-12 1.2e-09 38.2 0.2 2 26 114 138 113 138 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF570-204 - 333 9.2e-104 335.7 67.3 6 12 2.8e-11 2e-08 34.3 0.2 4 25 144 165 142 165 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF570-204 - 333 9.2e-104 335.7 67.3 7 12 1.3e-11 8.7e-09 35.4 0.4 2 25 170 193 169 194 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF570-204 - 333 9.2e-104 335.7 67.3 8 12 1.1e-11 7.4e-09 35.6 1.3 1 25 197 221 197 222 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF570-204 - 333 9.2e-104 335.7 67.3 9 12 1.7e-12 1.2e-09 38.2 0.2 2 26 226 250 225 250 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF570-204 - 333 9.2e-104 335.7 67.3 10 12 9.7e-13 6.7e-10 38.9 0.4 1 25 253 277 253 278 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF570-204 - 333 9.2e-104 335.7 67.3 11 12 2.4e-11 1.6e-08 34.6 0.9 2 25 282 305 281 306 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF570-204 - 333 9.2e-104 335.7 67.3 12 12 0.33 2.3e+02 2.5 0.3 1 13 309 321 309 328 0.85 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZNF570-204 - 333 2.8e-63 207.0 71.7 1 11 8.4e-09 5.8e-06 26.5 0.7 2 23 16 37 15 37 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF570-204 - 333 2.8e-63 207.0 71.7 2 11 2.7e-08 1.8e-05 24.9 0.4 1 23 43 65 43 65 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF570-204 - 333 2.8e-63 207.0 71.7 3 11 3.9e-08 2.7e-05 24.4 1.2 1 23 71 93 71 93 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF570-204 - 333 2.8e-63 207.0 71.7 4 11 7.2e-07 0.0005 20.4 0.6 1 23 99 121 99 121 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF570-204 - 333 2.8e-63 207.0 71.7 5 11 3.5e-06 0.0024 18.2 0.1 1 23 127 149 127 149 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF570-204 - 333 2.8e-63 207.0 71.7 6 11 8.9e-08 6.1e-05 23.2 0.2 1 23 155 177 155 177 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF570-204 - 333 2.8e-63 207.0 71.7 7 11 9.2e-10 6.3e-07 29.5 0.9 1 23 183 205 183 205 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF570-204 - 333 2.8e-63 207.0 71.7 8 11 6.4e-07 0.00044 20.5 0.4 1 23 211 233 211 233 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF570-204 - 333 2.8e-63 207.0 71.7 9 11 8.3e-07 0.00057 20.2 0.2 1 23 239 261 239 261 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF570-204 - 333 2.8e-63 207.0 71.7 10 11 6.4e-08 4.4e-05 23.7 0.7 1 23 267 289 267 289 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF570-204 - 333 2.8e-63 207.0 71.7 11 11 7.1e-07 0.00049 20.4 6.5 1 23 295 317 295 317 0.98 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZNF570-204 - 333 2e-35 118.4 73.0 1 11 0.00023 0.16 12.9 0.7 2 23 16 37 15 38 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF570-204 - 333 2e-35 118.4 73.0 2 11 1.6e-05 0.011 16.5 0.4 1 23 43 65 43 66 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF570-204 - 333 2e-35 118.4 73.0 3 11 2.1e-05 0.014 16.2 1.4 1 23 71 93 71 94 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF570-204 - 333 2e-35 118.4 73.0 4 11 0.00012 0.079 13.8 0.9 1 23 99 121 99 122 0.89 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF570-204 - 333 2e-35 118.4 73.0 5 11 5.7e-05 0.039 14.8 0.2 1 23 127 149 127 150 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF570-204 - 333 2e-35 118.4 73.0 6 11 0.00011 0.075 13.9 0.2 1 23 155 177 155 178 0.83 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF570-204 - 333 2e-35 118.4 73.0 7 11 9.1e-06 0.0063 17.3 1.0 1 23 183 205 183 206 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF570-204 - 333 2e-35 118.4 73.0 8 11 0.00018 0.13 13.2 0.5 1 23 211 233 211 234 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF570-204 - 333 2e-35 118.4 73.0 9 11 2.1e-05 0.014 16.1 0.2 1 23 239 261 239 262 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF570-204 - 333 2e-35 118.4 73.0 10 11 3.9e-06 0.0027 18.4 1.0 1 23 267 289 267 290 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF570-204 - 333 2e-35 118.4 73.0 11 11 0.00027 0.18 12.7 4.4 1 23 295 317 295 318 0.94 C2H2-type zinc finger zf-C2H2_jaz PF12171.8 27 ZNF570-204 - 333 3.3e-16 59.1 53.6 1 11 0.05 35 4.9 0.3 3 22 16 35 15 35 0.89 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF570-204 - 333 3.3e-16 59.1 53.6 2 11 0.00073 0.5 10.7 0.1 2 22 43 63 42 63 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF570-204 - 333 3.3e-16 59.1 53.6 3 11 0.00061 0.42 11.0 0.5 2 22 71 91 70 91 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF570-204 - 333 3.3e-16 59.1 53.6 4 11 0.024 16 5.9 0.5 2 12 99 109 98 118 0.91 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF570-204 - 333 3.3e-16 59.1 53.6 5 11 0.00022 0.15 12.4 0.1 2 22 127 147 126 147 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF570-204 - 333 3.3e-16 59.1 53.6 6 11 0.25 1.7e+02 2.6 0.1 2 12 155 165 154 175 0.82 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF570-204 - 333 3.3e-16 59.1 53.6 7 11 0.004 2.8 8.4 0.5 2 22 183 203 182 203 0.91 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF570-204 - 333 3.3e-16 59.1 53.6 8 11 0.0088 6 7.3 0.5 2 21 211 230 210 231 0.84 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF570-204 - 333 3.3e-16 59.1 53.6 9 11 3e-06 0.0021 18.3 0.1 2 22 239 259 238 259 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF570-204 - 333 3.3e-16 59.1 53.6 10 11 0.12 83 3.6 0.5 2 12 267 277 266 286 0.91 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF570-204 - 333 3.3e-16 59.1 53.6 11 11 0.0045 3.1 8.2 1.0 2 12 295 305 294 315 0.80 Zinc-finger double-stranded RNA-binding zf-C2H2_6 PF13912.6 27 ZNF570-204 - 333 1.7e-10 40.6 81.6 1 12 0.12 82 3.4 0.6 3 18 16 31 16 38 0.76 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF570-204 - 333 1.7e-10 40.6 81.6 2 12 0.015 10 6.2 0.3 2 12 43 53 43 65 0.83 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF570-204 - 333 1.7e-10 40.6 81.6 3 12 0.0033 2.3 8.3 0.5 2 12 71 81 71 93 0.90 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF570-204 - 333 1.7e-10 40.6 81.6 4 12 0.0028 1.9 8.6 0.6 2 12 99 109 99 121 0.88 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF570-204 - 333 1.7e-10 40.6 81.6 5 12 0.017 12 6.0 0.3 2 12 127 137 127 138 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF570-204 - 333 1.7e-10 40.6 81.6 6 12 0.00094 0.65 10.1 0.5 2 12 155 165 155 165 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF570-204 - 333 1.7e-10 40.6 81.6 7 12 0.0031 2.1 8.4 3.7 2 12 183 193 183 204 0.87 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF570-204 - 333 1.7e-10 40.6 81.6 8 12 0.0042 2.9 8.0 0.3 2 12 211 221 211 233 0.88 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF570-204 - 333 1.7e-10 40.6 81.6 9 12 0.0064 4.4 7.4 0.3 2 20 239 257 239 263 0.78 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF570-204 - 333 1.7e-10 40.6 81.6 10 12 0.00011 0.074 13.1 1.8 2 22 267 287 267 291 0.84 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF570-204 - 333 1.7e-10 40.6 81.6 11 12 0.00034 0.24 11.5 2.2 2 12 295 305 295 306 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF570-204 - 333 1.7e-10 40.6 81.6 12 12 4.3 3e+03 -1.6 0.7 20 26 309 315 308 316 0.82 C2H2-type zinc finger Zn-ribbon_8 PF09723.10 40 ZNF570-204 - 333 6e-10 39.1 57.3 1 11 0.00064 0.44 10.7 2.7 7 35 16 51 15 55 0.87 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF570-204 - 333 6e-10 39.1 57.3 2 11 0.00033 0.23 11.6 4.1 6 34 43 78 41 83 0.90 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF570-204 - 333 6e-10 39.1 57.3 3 11 0.034 24 5.2 5.8 6 34 71 106 70 110 0.79 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF570-204 - 333 6e-10 39.1 57.3 4 11 0.007 4.9 7.4 4.3 6 34 99 134 98 138 0.89 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF570-204 - 333 6e-10 39.1 57.3 5 11 0.00014 0.1 12.8 1.9 6 34 127 162 126 167 0.85 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF570-204 - 333 6e-10 39.1 57.3 6 11 9.2e-06 0.0063 16.6 2.3 6 35 155 191 153 195 0.92 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF570-204 - 333 6e-10 39.1 57.3 7 11 0.00012 0.08 13.1 5.2 6 35 183 219 182 224 0.90 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF570-204 - 333 6e-10 39.1 57.3 8 11 0.00063 0.44 10.7 4.0 6 34 211 246 210 250 0.90 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF570-204 - 333 6e-10 39.1 57.3 9 11 0.00049 0.34 11.1 3.0 6 34 239 274 238 278 0.91 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF570-204 - 333 6e-10 39.1 57.3 10 11 0.00079 0.55 10.4 6.3 6 37 267 305 266 308 0.91 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF570-204 - 333 6e-10 39.1 57.3 11 11 0.016 11 6.2 1.0 6 17 295 306 294 314 0.83 Zinc ribbon domain XPA_N PF01286.18 32 ZNF570-204 - 333 4e-09 36.3 43.0 1 11 0.062 43 4.3 0.8 3 14 16 27 15 30 0.91 XPA protein N-terminal XPA_N PF01286.18 32 ZNF570-204 - 333 4e-09 36.3 43.0 2 11 0.0043 3 8.0 0.1 3 12 44 53 42 61 0.86 XPA protein N-terminal XPA_N PF01286.18 32 ZNF570-204 - 333 4e-09 36.3 43.0 3 11 0.03 21 5.3 0.2 3 12 72 81 70 84 0.88 XPA protein N-terminal XPA_N PF01286.18 32 ZNF570-204 - 333 4e-09 36.3 43.0 4 11 0.24 1.7e+02 2.4 0.1 20 27 99 106 97 115 0.70 XPA protein N-terminal XPA_N PF01286.18 32 ZNF570-204 - 333 4e-09 36.3 43.0 5 11 0.0078 5.4 7.2 0.2 3 12 128 137 126 138 0.88 XPA protein N-terminal XPA_N PF01286.18 32 ZNF570-204 - 333 4e-09 36.3 43.0 6 11 0.22 1.5e+02 2.5 0.0 3 12 156 165 154 172 0.77 XPA protein N-terminal XPA_N PF01286.18 32 ZNF570-204 - 333 4e-09 36.3 43.0 7 11 0.0038 2.6 8.1 0.1 3 12 184 193 182 201 0.83 XPA protein N-terminal XPA_N PF01286.18 32 ZNF570-204 - 333 4e-09 36.3 43.0 8 11 0.0094 6.5 6.9 0.1 3 13 212 222 210 229 0.81 XPA protein N-terminal XPA_N PF01286.18 32 ZNF570-204 - 333 4e-09 36.3 43.0 9 11 0.0035 2.4 8.3 0.1 3 12 240 249 238 257 0.77 XPA protein N-terminal XPA_N PF01286.18 32 ZNF570-204 - 333 4e-09 36.3 43.0 10 11 0.41 2.8e+02 1.7 0.1 3 11 268 276 266 278 0.82 XPA protein N-terminal XPA_N PF01286.18 32 ZNF570-204 - 333 4e-09 36.3 43.0 11 11 0.021 14 5.8 0.5 3 12 296 305 294 307 0.88 XPA protein N-terminal zf-LYAR PF08790.11 28 ZNF570-204 - 333 3.2e-07 30.1 46.1 1 11 0.0095 6.5 6.7 0.2 3 14 17 29 15 35 0.77 LYAR-type C2HC zinc finger zf-LYAR PF08790.11 28 ZNF570-204 - 333 3.2e-07 30.1 46.1 2 11 0.00079 0.54 10.2 0.1 1 18 43 61 43 63 0.83 LYAR-type C2HC zinc finger zf-LYAR PF08790.11 28 ZNF570-204 - 333 3.2e-07 30.1 46.1 3 11 0.29 2e+02 2.0 0.1 2 13 72 83 71 90 0.76 LYAR-type C2HC zinc finger zf-LYAR PF08790.11 28 ZNF570-204 - 333 3.2e-07 30.1 46.1 4 11 1.7 1.2e+03 -0.5 0.2 5 15 103 113 99 118 0.73 LYAR-type C2HC zinc finger zf-LYAR PF08790.11 28 ZNF570-204 - 333 3.2e-07 30.1 46.1 5 11 0.00024 0.17 11.8 0.1 1 18 127 145 127 147 0.88 LYAR-type C2HC zinc finger zf-LYAR PF08790.11 28 ZNF570-204 - 333 3.2e-07 30.1 46.1 6 11 1.3 8.9e+02 -0.1 0.1 3 15 157 169 155 171 0.77 LYAR-type C2HC zinc finger zf-LYAR PF08790.11 28 ZNF570-204 - 333 3.2e-07 30.1 46.1 7 11 0.048 33 4.5 0.2 2 15 184 197 183 203 0.76 LYAR-type C2HC zinc finger zf-LYAR PF08790.11 28 ZNF570-204 - 333 3.2e-07 30.1 46.1 8 11 0.28 1.9e+02 2.1 0.1 1 14 211 225 211 231 0.74 LYAR-type C2HC zinc finger zf-LYAR PF08790.11 28 ZNF570-204 - 333 3.2e-07 30.1 46.1 9 11 0.00034 0.24 11.4 0.2 1 18 239 257 239 259 0.81 LYAR-type C2HC zinc finger zf-LYAR PF08790.11 28 ZNF570-204 - 333 3.2e-07 30.1 46.1 10 11 0.19 1.3e+02 2.6 0.5 2 18 268 285 267 287 0.84 LYAR-type C2HC zinc finger zf-LYAR PF08790.11 28 ZNF570-204 - 333 3.2e-07 30.1 46.1 11 11 0.022 15 5.6 1.5 2 19 296 313 295 315 0.87 LYAR-type C2HC zinc finger zf-C2H2_11 PF16622.5 29 ZNF570-204 - 333 9.1e-07 28.5 52.5 1 11 0.046 32 4.4 1.0 6 26 16 36 14 37 0.93 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF570-204 - 333 9.1e-07 28.5 52.5 2 11 0.0017 1.2 9.0 0.2 5 26 43 64 40 65 0.90 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF570-204 - 333 9.1e-07 28.5 52.5 3 11 0.11 78 3.2 0.2 6 25 72 91 69 93 0.89 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF570-204 - 333 9.1e-07 28.5 52.5 4 11 2.5 1.7e+03 -1.2 0.1 9 13 100 104 99 119 0.80 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF570-204 - 333 9.1e-07 28.5 52.5 5 11 0.0083 5.7 6.8 0.1 6 25 128 147 125 149 0.87 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF570-204 - 333 9.1e-07 28.5 52.5 6 11 0.31 2.1e+02 1.8 0.1 7 26 157 176 154 177 0.82 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF570-204 - 333 9.1e-07 28.5 52.5 7 11 0.007 4.8 7.0 0.2 6 26 184 204 182 205 0.91 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF570-204 - 333 9.1e-07 28.5 52.5 8 11 0.034 23 4.8 0.2 5 25 211 231 208 233 0.86 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF570-204 - 333 9.1e-07 28.5 52.5 9 11 0.00023 0.16 11.8 0.1 6 25 240 259 237 261 0.90 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF570-204 - 333 9.1e-07 28.5 52.5 10 11 0.00064 0.44 10.3 0.7 6 26 268 288 265 289 0.93 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF570-204 - 333 9.1e-07 28.5 52.5 11 11 0.29 2e+02 1.8 1.1 6 26 296 316 294 317 0.86 zinc-finger C2H2-type # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF570-204.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF570-204.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF570-204.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF570-204.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF570-204.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:09:29 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF570-205.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF570-205.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF570-205.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF570-205.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF570-205.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:09:29 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- KRAB PF01352.27 42 ZNF570-206 - 86 4e-26 90.4 0.3 1 1 3.1e-30 5.6e-26 89.9 0.3 1 42 13 54 13 54 0.99 KRAB box # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF570-206.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF570-206.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF570-206.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF570-206.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF570-206.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:09:29 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF570-207.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF570-207.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF570-207.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF570-207.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF570-207.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:09:30 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZNF571-201 - 609 4.3e-130 418.9 116.2 1 17 0.00062 0.66 10.5 0.8 10 25 134 149 125 150 0.85 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF571-201 - 609 4.3e-130 418.9 116.2 2 17 4.8e-10 5.1e-07 29.8 0.0 3 25 183 205 181 206 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF571-201 - 609 4.3e-130 418.9 116.2 3 17 1.9e-10 2e-07 31.1 0.1 2 24 210 232 209 234 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF571-201 - 609 4.3e-130 418.9 116.2 4 17 2.6e-12 2.7e-09 37.0 1.3 2 25 238 261 237 262 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF571-201 - 609 4.3e-130 418.9 116.2 5 17 7.1e-10 7.5e-07 29.3 0.4 3 24 267 288 265 289 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF571-201 - 609 4.3e-130 418.9 116.2 6 17 1.8e-11 1.9e-08 34.3 0.4 2 24 294 316 293 317 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF571-201 - 609 4.3e-130 418.9 116.2 7 17 4.4e-10 4.7e-07 30.0 3.4 1 25 321 345 321 346 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF571-201 - 609 4.3e-130 418.9 116.2 8 17 8.6e-12 9.1e-09 35.4 1.1 2 24 350 372 349 374 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF571-201 - 609 4.3e-130 418.9 116.2 9 17 2e-11 2.1e-08 34.2 0.5 2 25 378 401 377 402 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF571-201 - 609 4.3e-130 418.9 116.2 10 17 1.4e-11 1.5e-08 34.7 1.1 1 24 405 428 405 430 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF571-201 - 609 4.3e-130 418.9 116.2 11 17 8.4e-12 8.8e-09 35.4 0.3 2 24 434 456 433 458 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF571-201 - 609 4.3e-130 418.9 116.2 12 17 1.2e-06 0.0013 19.1 2.6 2 26 462 485 461 485 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF571-201 - 609 4.3e-130 418.9 116.2 13 17 2e-12 2.2e-09 37.3 1.2 2 24 489 511 488 513 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF571-201 - 609 4.3e-130 418.9 116.2 14 17 4e-11 4.3e-08 33.2 0.3 2 24 517 539 516 541 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF571-201 - 609 4.3e-130 418.9 116.2 15 17 1.4e-11 1.5e-08 34.7 2.0 1 25 544 568 544 569 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF571-201 - 609 4.3e-130 418.9 116.2 16 17 1.2e-09 1.3e-06 28.6 1.1 2 24 573 595 572 597 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF571-201 - 609 4.3e-130 418.9 116.2 17 17 3.5 3.7e+03 -1.3 0.3 2 9 601 608 600 609 0.88 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZNF571-201 - 609 2e-76 248.4 111.1 1 17 0.00034 0.36 11.4 2.2 1 23 139 161 139 161 0.95 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF571-201 - 609 2e-76 248.4 111.1 2 17 1.5 1.6e+03 -0.1 0.1 9 21 175 187 166 188 0.87 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF571-201 - 609 2e-76 248.4 111.1 3 17 1.4e-07 0.00014 22.1 0.1 1 23 195 217 195 217 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF571-201 - 609 2e-76 248.4 111.1 4 17 1.6e-07 0.00017 21.8 0.1 1 23 223 245 223 245 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF571-201 - 609 2e-76 248.4 111.1 5 17 3.5e-07 0.00037 20.8 3.7 1 23 251 273 251 273 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF571-201 - 609 2e-76 248.4 111.1 6 17 7.7e-07 0.00081 19.7 0.2 1 23 279 301 279 301 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF571-201 - 609 2e-76 248.4 111.1 7 17 1.3e-06 0.0013 19.0 0.8 1 23 307 329 307 329 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF571-201 - 609 2e-76 248.4 111.1 8 17 0.00017 0.18 12.3 0.6 1 23 335 357 335 357 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF571-201 - 609 2e-76 248.4 111.1 9 17 1.5e-07 0.00016 21.9 1.1 1 23 363 385 363 385 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF571-201 - 609 2e-76 248.4 111.1 10 17 1.2e-09 1.3e-06 28.5 0.3 1 23 391 413 391 413 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF571-201 - 609 2e-76 248.4 111.1 11 17 0.00013 0.13 12.7 1.2 1 23 419 441 419 441 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF571-201 - 609 2e-76 248.4 111.1 12 17 2.1e-06 0.0022 18.4 0.1 1 23 447 469 447 469 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF571-201 - 609 2e-76 248.4 111.1 13 17 1.4e-08 1.4e-05 25.2 0.7 1 23 474 496 474 496 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF571-201 - 609 2e-76 248.4 111.1 14 17 5e-07 0.00053 20.3 0.4 1 23 502 524 502 524 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF571-201 - 609 2e-76 248.4 111.1 15 17 2.8e-08 3e-05 24.2 1.2 1 23 530 552 530 552 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF571-201 - 609 2e-76 248.4 111.1 16 17 3.1e-08 3.2e-05 24.1 0.2 1 23 558 580 558 580 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF571-201 - 609 2e-76 248.4 111.1 17 17 8.5e-06 0.009 16.4 2.8 1 23 586 608 586 608 0.99 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZNF571-201 - 609 7e-43 141.6 109.7 1 16 0.0002 0.21 12.5 2.0 1 23 139 161 139 162 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF571-201 - 609 7e-43 141.6 109.7 2 16 0.00012 0.13 13.2 0.1 1 23 195 217 195 218 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF571-201 - 609 7e-43 141.6 109.7 3 16 0.00092 0.97 10.5 0.2 1 23 223 245 223 246 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF571-201 - 609 7e-43 141.6 109.7 4 16 0.00069 0.72 10.8 3.3 1 23 251 273 251 274 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF571-201 - 609 7e-43 141.6 109.7 5 16 0.0013 1.4 10.0 0.2 1 23 279 301 279 302 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF571-201 - 609 7e-43 141.6 109.7 6 16 0.0019 2 9.4 0.8 1 23 307 329 307 330 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF571-201 - 609 7e-43 141.6 109.7 7 16 2.8e-05 0.03 15.2 0.8 1 23 335 357 335 358 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF571-201 - 609 7e-43 141.6 109.7 8 16 1.5e-05 0.016 16.0 1.0 1 23 363 385 363 386 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF571-201 - 609 7e-43 141.6 109.7 9 16 6.4e-06 0.0068 17.2 0.3 1 23 391 413 391 414 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF571-201 - 609 7e-43 141.6 109.7 10 16 3.8e-05 0.04 14.8 1.4 1 23 419 441 419 442 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF571-201 - 609 7e-43 141.6 109.7 11 16 0.00016 0.17 12.8 0.1 1 23 447 469 447 470 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF571-201 - 609 7e-43 141.6 109.7 12 16 1.5e-05 0.016 16.0 0.5 1 23 474 496 474 497 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF571-201 - 609 7e-43 141.6 109.7 13 16 0.00047 0.49 11.4 0.5 1 23 502 524 502 525 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF571-201 - 609 7e-43 141.6 109.7 14 16 1.9e-05 0.02 15.7 0.9 1 23 530 552 530 553 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF571-201 - 609 7e-43 141.6 109.7 15 16 0.00016 0.16 12.8 0.2 1 23 558 580 558 581 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF571-201 - 609 7e-43 141.6 109.7 16 16 2.9e-05 0.031 15.1 2.0 1 23 586 608 586 609 0.95 C2H2-type zinc finger KRAB PF01352.27 42 ZNF571-201 - 609 2.4e-27 94.3 0.2 1 1 5e-30 5.3e-27 93.2 0.2 1 42 5 46 5 46 0.98 KRAB box zf-C2H2_6 PF13912.6 27 ZNF571-201 - 609 1.4e-22 79.2 118.5 1 16 0.015 16 5.6 2.0 2 24 139 161 138 163 0.85 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF571-201 - 609 1.4e-22 79.2 118.5 2 16 0.00044 0.47 10.5 0.3 2 24 195 217 195 218 0.91 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF571-201 - 609 1.4e-22 79.2 118.5 3 16 0.0058 6.1 7.0 0.3 2 24 223 245 223 248 0.90 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF571-201 - 609 1.4e-22 79.2 118.5 4 16 0.02 21 5.2 4.4 2 13 251 262 251 263 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF571-201 - 609 1.4e-22 79.2 118.5 5 16 0.034 36 4.5 0.1 2 11 279 288 279 299 0.95 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF571-201 - 609 1.4e-22 79.2 118.5 6 16 0.0064 6.8 6.8 2.8 2 11 307 316 307 327 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF571-201 - 609 1.4e-22 79.2 118.5 7 16 0.0035 3.7 7.7 0.8 2 11 335 344 335 357 0.90 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF571-201 - 609 1.4e-22 79.2 118.5 8 16 4.8e-05 0.05 13.6 1.6 2 24 363 385 363 388 0.90 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF571-201 - 609 1.4e-22 79.2 118.5 9 16 8.9e-05 0.094 12.7 0.4 2 24 391 413 391 416 0.89 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF571-201 - 609 1.4e-22 79.2 118.5 10 16 0.0019 2 8.5 2.3 2 22 419 439 419 443 0.82 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF571-201 - 609 1.4e-22 79.2 118.5 11 16 0.0014 1.4 9.0 0.3 2 11 447 456 447 467 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF571-201 - 609 1.4e-22 79.2 118.5 12 16 1.9e-05 0.02 14.9 1.3 1 21 473 493 473 498 0.83 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF571-201 - 609 1.4e-22 79.2 118.5 13 16 6e-05 0.063 13.3 0.8 2 26 502 526 502 527 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF571-201 - 609 1.4e-22 79.2 118.5 14 16 2.6e-06 0.0027 17.6 1.6 2 24 530 552 530 555 0.96 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF571-201 - 609 1.4e-22 79.2 118.5 15 16 3.2e-05 0.034 14.1 0.4 2 22 558 578 558 582 0.89 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF571-201 - 609 1.4e-22 79.2 118.5 16 16 0.49 5.1e+02 0.8 0.9 2 12 586 596 586 608 0.87 C2H2-type zinc finger zf-C2H2_jaz PF12171.8 27 ZNF571-201 - 609 2e-19 69.4 68.0 1 16 4.2 4.5e+03 -1.9 0.3 2 8 139 145 139 149 0.81 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF571-201 - 609 2e-19 69.4 68.0 2 16 0.0099 10 6.5 0.0 2 22 195 215 194 215 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF571-201 - 609 2e-19 69.4 68.0 3 16 0.0065 6.9 7.1 0.0 4 22 225 243 222 243 0.91 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF571-201 - 609 2e-19 69.4 68.0 4 16 9.2 9.7e+03 -2.9 2.0 2 12 251 261 250 271 0.75 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF571-201 - 609 2e-19 69.4 68.0 5 16 0.15 1.5e+02 2.8 0.1 2 20 279 297 278 299 0.76 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF571-201 - 609 2e-19 69.4 68.0 6 16 0.067 71 3.9 0.1 2 12 307 317 306 326 0.91 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF571-201 - 609 2e-19 69.4 68.0 7 16 0.013 13 6.2 0.5 2 22 335 355 334 355 0.91 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF571-201 - 609 2e-19 69.4 68.0 8 16 0.00081 0.85 10.0 0.0 2 22 363 383 362 383 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF571-201 - 609 2e-19 69.4 68.0 9 16 2.9e-05 0.03 14.6 0.2 2 22 391 411 390 411 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF571-201 - 609 2e-19 69.4 68.0 10 16 0.027 29 5.1 0.7 2 21 419 438 418 439 0.84 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF571-201 - 609 2e-19 69.4 68.0 11 16 0.00016 0.17 12.2 0.1 2 22 447 467 446 467 0.95 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF571-201 - 609 2e-19 69.4 68.0 12 16 0.00026 0.28 11.5 0.6 2 22 474 494 473 494 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF571-201 - 609 2e-19 69.4 68.0 13 16 0.0013 1.3 9.4 0.3 2 21 502 521 501 522 0.85 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF571-201 - 609 2e-19 69.4 68.0 14 16 0.00074 0.78 10.1 0.1 2 24 530 552 529 552 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF571-201 - 609 2e-19 69.4 68.0 15 16 0.014 15 6.0 0.0 2 21 558 577 557 578 0.88 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF571-201 - 609 2e-19 69.4 68.0 16 16 0.012 13 6.3 0.1 2 21 586 605 585 606 0.91 Zinc-finger double-stranded RNA-binding Zn-ribbon_8 PF09723.10 40 ZNF571-201 - 609 3.4e-16 59.1 92.5 1 11 0.077 81 3.5 1.7 6 18 139 151 138 171 0.70 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF571-201 - 609 3.4e-16 59.1 92.5 2 11 3.9e-05 0.042 14.0 1.5 6 35 195 231 194 235 0.89 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF571-201 - 609 3.4e-16 59.1 92.5 3 11 0.00011 0.12 12.5 5.9 6 34 251 286 250 289 0.92 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF571-201 - 609 3.4e-16 59.1 92.5 4 11 0.00026 0.27 11.4 4.4 6 34 279 314 278 318 0.90 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF571-201 - 609 3.4e-16 59.1 92.5 5 11 0.00014 0.15 12.2 2.6 6 34 307 342 306 345 0.91 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF571-201 - 609 3.4e-16 59.1 92.5 6 11 0.00054 0.57 10.3 5.7 6 35 335 371 334 375 0.91 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF571-201 - 609 3.4e-16 59.1 92.5 7 11 1.2e-05 0.013 15.6 2.1 6 34 391 426 390 429 0.92 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF571-201 - 609 3.4e-16 59.1 92.5 8 11 0.00019 0.2 11.8 6.0 6 38 419 458 418 460 0.89 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF571-201 - 609 3.4e-16 59.1 92.5 9 11 0.0017 1.8 8.8 6.5 6 34 474 509 473 511 0.89 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF571-201 - 609 3.4e-16 59.1 92.5 10 11 0.00011 0.12 12.5 4.2 6 35 502 538 501 541 0.92 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF571-201 - 609 3.4e-16 59.1 92.5 11 11 5.1e-05 0.054 13.6 4.1 6 36 558 595 557 597 0.90 Zinc ribbon domain zf_UBZ PF18439.1 32 ZNF571-201 - 609 5.5e-12 45.1 76.6 1 16 0.19 2e+02 1.7 0.2 3 12 139 148 137 151 0.84 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF571-201 - 609 5.5e-12 45.1 76.6 2 16 0.042 44 3.8 0.1 3 21 195 214 193 214 0.84 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF571-201 - 609 5.5e-12 45.1 76.6 3 16 0.0056 5.9 6.6 0.0 3 21 223 242 221 242 0.92 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF571-201 - 609 5.5e-12 45.1 76.6 4 16 0.08 85 2.9 1.6 3 13 251 261 249 263 0.87 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF571-201 - 609 5.5e-12 45.1 76.6 5 16 0.023 24 4.6 0.1 3 14 279 290 277 298 0.75 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF571-201 - 609 5.5e-12 45.1 76.6 6 16 0.023 24 4.6 0.1 3 12 307 316 305 325 0.82 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF571-201 - 609 5.5e-12 45.1 76.6 7 16 3.5e-05 0.037 13.6 0.6 3 21 335 354 333 354 0.95 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF571-201 - 609 5.5e-12 45.1 76.6 8 16 0.022 24 4.7 0.1 3 12 363 372 361 379 0.90 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF571-201 - 609 5.5e-12 45.1 76.6 9 16 0.0035 3.7 7.2 0.1 3 21 391 410 389 410 0.84 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF571-201 - 609 5.5e-12 45.1 76.6 10 16 0.00085 0.9 9.2 0.8 3 21 419 438 417 438 0.93 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF571-201 - 609 5.5e-12 45.1 76.6 11 16 0.036 38 4.0 0.1 3 13 447 457 445 466 0.78 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF571-201 - 609 5.5e-12 45.1 76.6 12 16 0.0028 2.9 7.6 0.3 2 18 473 490 472 493 0.77 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF571-201 - 609 5.5e-12 45.1 76.6 13 16 0.0055 5.8 6.6 0.2 3 21 502 521 500 521 0.86 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF571-201 - 609 5.5e-12 45.1 76.6 14 16 0.008 8.5 6.1 0.2 3 20 530 548 528 549 0.84 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF571-201 - 609 5.5e-12 45.1 76.6 15 16 0.027 28 4.4 0.1 3 16 558 572 556 577 0.77 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF571-201 - 609 5.5e-12 45.1 76.6 16 16 0.014 15 5.3 0.6 3 20 586 604 584 605 0.90 Ubiquitin-Binding Zinc Finger zf-trcl PF13451.6 48 ZNF571-201 - 609 1.4e-11 44.1 73.0 1 16 0.09 95 3.0 0.1 5 14 139 148 135 152 0.62 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF571-201 - 609 1.4e-11 44.1 73.0 2 16 0.22 2.3e+02 1.7 0.1 3 14 193 204 191 208 0.87 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF571-201 - 609 1.4e-11 44.1 73.0 3 16 0.041 43 4.1 0.0 3 15 221 233 219 236 0.89 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF571-201 - 609 1.4e-11 44.1 73.0 4 16 0.02 21 5.1 0.4 3 16 249 262 247 266 0.85 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF571-201 - 609 1.4e-11 44.1 73.0 5 16 0.0021 2.2 8.3 0.0 3 15 277 289 275 301 0.90 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF571-201 - 609 1.4e-11 44.1 73.0 6 16 0.01 11 6.0 0.0 3 15 305 317 303 320 0.90 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF571-201 - 609 1.4e-11 44.1 73.0 7 16 0.011 11 6.0 0.3 3 15 333 345 331 349 0.88 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF571-201 - 609 1.4e-11 44.1 73.0 8 16 0.0052 5.5 7.0 4.6 3 41 361 398 359 400 0.74 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF571-201 - 609 1.4e-11 44.1 73.0 9 16 0.012 12 5.8 0.3 3 15 389 401 387 404 0.88 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF571-201 - 609 1.4e-11 44.1 73.0 10 16 0.006 6.4 6.8 0.6 3 15 417 429 415 433 0.90 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF571-201 - 609 1.4e-11 44.1 73.0 11 16 0.0073 7.7 6.5 0.1 3 15 445 457 443 461 0.89 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF571-201 - 609 1.4e-11 44.1 73.0 12 16 0.00057 0.6 10.1 5.8 3 41 472 509 470 511 0.83 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF571-201 - 609 1.4e-11 44.1 73.0 13 16 0.006 6.3 6.8 0.4 3 16 500 513 498 516 0.87 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF571-201 - 609 1.4e-11 44.1 73.0 14 16 0.012 12 5.8 0.1 3 15 528 540 526 541 0.90 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF571-201 - 609 1.4e-11 44.1 73.0 15 16 0.044 46 4.0 0.1 3 14 556 567 554 568 0.87 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF571-201 - 609 1.4e-11 44.1 73.0 16 16 0.027 28 4.7 0.9 3 14 584 595 582 597 0.91 Probable zinc-ribbon domain XPA_N PF01286.18 32 ZNF571-201 - 609 6.7e-09 35.6 74.3 1 16 0.38 4e+02 1.2 1.6 3 11 140 148 139 153 0.85 XPA protein N-terminal XPA_N PF01286.18 32 ZNF571-201 - 609 6.7e-09 35.6 74.3 2 16 0.0054 5.6 7.1 0.1 3 12 196 205 194 211 0.89 XPA protein N-terminal XPA_N PF01286.18 32 ZNF571-201 - 609 6.7e-09 35.6 74.3 3 16 0.25 2.6e+02 1.8 0.0 3 12 224 233 222 241 0.80 XPA protein N-terminal XPA_N PF01286.18 32 ZNF571-201 - 609 6.7e-09 35.6 74.3 4 16 0.061 65 3.7 1.1 3 11 252 260 250 263 0.89 XPA protein N-terminal XPA_N PF01286.18 32 ZNF571-201 - 609 6.7e-09 35.6 74.3 5 16 0.031 33 4.6 0.1 3 11 280 288 278 295 0.86 XPA protein N-terminal XPA_N PF01286.18 32 ZNF571-201 - 609 6.7e-09 35.6 74.3 6 16 0.011 11 6.1 0.1 3 11 308 316 306 322 0.89 XPA protein N-terminal XPA_N PF01286.18 32 ZNF571-201 - 609 6.7e-09 35.6 74.3 7 16 0.0093 9.8 6.3 0.5 3 12 336 345 334 353 0.83 XPA protein N-terminal XPA_N PF01286.18 32 ZNF571-201 - 609 6.7e-09 35.6 74.3 8 16 0.0098 10 6.2 0.1 3 11 364 372 362 381 0.87 XPA protein N-terminal XPA_N PF01286.18 32 ZNF571-201 - 609 6.7e-09 35.6 74.3 9 16 0.0061 6.4 6.9 0.1 3 12 392 401 390 409 0.84 XPA protein N-terminal XPA_N PF01286.18 32 ZNF571-201 - 609 6.7e-09 35.6 74.3 10 16 0.021 22 5.2 1.1 3 11 420 428 418 431 0.90 XPA protein N-terminal XPA_N PF01286.18 32 ZNF571-201 - 609 6.7e-09 35.6 74.3 11 16 0.0068 7.1 6.8 0.1 3 12 448 457 446 465 0.80 XPA protein N-terminal XPA_N PF01286.18 32 ZNF571-201 - 609 6.7e-09 35.6 74.3 12 16 0.01 11 6.2 0.1 3 12 475 484 474 487 0.89 XPA protein N-terminal XPA_N PF01286.18 32 ZNF571-201 - 609 6.7e-09 35.6 74.3 13 16 0.011 12 6.1 0.2 3 12 503 512 501 520 0.78 XPA protein N-terminal XPA_N PF01286.18 32 ZNF571-201 - 609 6.7e-09 35.6 74.3 14 16 0.042 44 4.2 0.1 3 12 531 540 529 548 0.86 XPA protein N-terminal XPA_N PF01286.18 32 ZNF571-201 - 609 6.7e-09 35.6 74.3 15 16 0.033 35 4.6 0.2 3 12 559 568 557 569 0.88 XPA protein N-terminal XPA_N PF01286.18 32 ZNF571-201 - 609 6.7e-09 35.6 74.3 16 16 0.16 1.7e+02 2.3 0.3 3 11 587 595 585 604 0.83 XPA protein N-terminal # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF571-201.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF571-201.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF571-201.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF571-201.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF571-201.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:09:30 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZNF571-202 - 609 4.3e-130 418.9 116.2 1 17 0.00062 0.66 10.5 0.8 10 25 134 149 125 150 0.85 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF571-202 - 609 4.3e-130 418.9 116.2 2 17 4.8e-10 5.1e-07 29.8 0.0 3 25 183 205 181 206 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF571-202 - 609 4.3e-130 418.9 116.2 3 17 1.9e-10 2e-07 31.1 0.1 2 24 210 232 209 234 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF571-202 - 609 4.3e-130 418.9 116.2 4 17 2.6e-12 2.7e-09 37.0 1.3 2 25 238 261 237 262 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF571-202 - 609 4.3e-130 418.9 116.2 5 17 7.1e-10 7.5e-07 29.3 0.4 3 24 267 288 265 289 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF571-202 - 609 4.3e-130 418.9 116.2 6 17 1.8e-11 1.9e-08 34.3 0.4 2 24 294 316 293 317 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF571-202 - 609 4.3e-130 418.9 116.2 7 17 4.4e-10 4.7e-07 30.0 3.4 1 25 321 345 321 346 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF571-202 - 609 4.3e-130 418.9 116.2 8 17 8.6e-12 9.1e-09 35.4 1.1 2 24 350 372 349 374 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF571-202 - 609 4.3e-130 418.9 116.2 9 17 2e-11 2.1e-08 34.2 0.5 2 25 378 401 377 402 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF571-202 - 609 4.3e-130 418.9 116.2 10 17 1.4e-11 1.5e-08 34.7 1.1 1 24 405 428 405 430 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF571-202 - 609 4.3e-130 418.9 116.2 11 17 8.4e-12 8.8e-09 35.4 0.3 2 24 434 456 433 458 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF571-202 - 609 4.3e-130 418.9 116.2 12 17 1.2e-06 0.0013 19.1 2.6 2 26 462 485 461 485 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF571-202 - 609 4.3e-130 418.9 116.2 13 17 2e-12 2.2e-09 37.3 1.2 2 24 489 511 488 513 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF571-202 - 609 4.3e-130 418.9 116.2 14 17 4e-11 4.3e-08 33.2 0.3 2 24 517 539 516 541 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF571-202 - 609 4.3e-130 418.9 116.2 15 17 1.4e-11 1.5e-08 34.7 2.0 1 25 544 568 544 569 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF571-202 - 609 4.3e-130 418.9 116.2 16 17 1.2e-09 1.3e-06 28.6 1.1 2 24 573 595 572 597 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF571-202 - 609 4.3e-130 418.9 116.2 17 17 3.5 3.7e+03 -1.3 0.3 2 9 601 608 600 609 0.88 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZNF571-202 - 609 2e-76 248.4 111.1 1 17 0.00034 0.36 11.4 2.2 1 23 139 161 139 161 0.95 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF571-202 - 609 2e-76 248.4 111.1 2 17 1.5 1.6e+03 -0.1 0.1 9 21 175 187 166 188 0.87 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF571-202 - 609 2e-76 248.4 111.1 3 17 1.4e-07 0.00014 22.1 0.1 1 23 195 217 195 217 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF571-202 - 609 2e-76 248.4 111.1 4 17 1.6e-07 0.00017 21.8 0.1 1 23 223 245 223 245 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF571-202 - 609 2e-76 248.4 111.1 5 17 3.5e-07 0.00037 20.8 3.7 1 23 251 273 251 273 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF571-202 - 609 2e-76 248.4 111.1 6 17 7.7e-07 0.00081 19.7 0.2 1 23 279 301 279 301 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF571-202 - 609 2e-76 248.4 111.1 7 17 1.3e-06 0.0013 19.0 0.8 1 23 307 329 307 329 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF571-202 - 609 2e-76 248.4 111.1 8 17 0.00017 0.18 12.3 0.6 1 23 335 357 335 357 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF571-202 - 609 2e-76 248.4 111.1 9 17 1.5e-07 0.00016 21.9 1.1 1 23 363 385 363 385 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF571-202 - 609 2e-76 248.4 111.1 10 17 1.2e-09 1.3e-06 28.5 0.3 1 23 391 413 391 413 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF571-202 - 609 2e-76 248.4 111.1 11 17 0.00013 0.13 12.7 1.2 1 23 419 441 419 441 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF571-202 - 609 2e-76 248.4 111.1 12 17 2.1e-06 0.0022 18.4 0.1 1 23 447 469 447 469 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF571-202 - 609 2e-76 248.4 111.1 13 17 1.4e-08 1.4e-05 25.2 0.7 1 23 474 496 474 496 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF571-202 - 609 2e-76 248.4 111.1 14 17 5e-07 0.00053 20.3 0.4 1 23 502 524 502 524 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF571-202 - 609 2e-76 248.4 111.1 15 17 2.8e-08 3e-05 24.2 1.2 1 23 530 552 530 552 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF571-202 - 609 2e-76 248.4 111.1 16 17 3.1e-08 3.2e-05 24.1 0.2 1 23 558 580 558 580 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF571-202 - 609 2e-76 248.4 111.1 17 17 8.5e-06 0.009 16.4 2.8 1 23 586 608 586 608 0.99 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZNF571-202 - 609 7e-43 141.6 109.7 1 16 0.0002 0.21 12.5 2.0 1 23 139 161 139 162 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF571-202 - 609 7e-43 141.6 109.7 2 16 0.00012 0.13 13.2 0.1 1 23 195 217 195 218 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF571-202 - 609 7e-43 141.6 109.7 3 16 0.00092 0.97 10.5 0.2 1 23 223 245 223 246 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF571-202 - 609 7e-43 141.6 109.7 4 16 0.00069 0.72 10.8 3.3 1 23 251 273 251 274 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF571-202 - 609 7e-43 141.6 109.7 5 16 0.0013 1.4 10.0 0.2 1 23 279 301 279 302 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF571-202 - 609 7e-43 141.6 109.7 6 16 0.0019 2 9.4 0.8 1 23 307 329 307 330 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF571-202 - 609 7e-43 141.6 109.7 7 16 2.8e-05 0.03 15.2 0.8 1 23 335 357 335 358 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF571-202 - 609 7e-43 141.6 109.7 8 16 1.5e-05 0.016 16.0 1.0 1 23 363 385 363 386 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF571-202 - 609 7e-43 141.6 109.7 9 16 6.4e-06 0.0068 17.2 0.3 1 23 391 413 391 414 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF571-202 - 609 7e-43 141.6 109.7 10 16 3.8e-05 0.04 14.8 1.4 1 23 419 441 419 442 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF571-202 - 609 7e-43 141.6 109.7 11 16 0.00016 0.17 12.8 0.1 1 23 447 469 447 470 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF571-202 - 609 7e-43 141.6 109.7 12 16 1.5e-05 0.016 16.0 0.5 1 23 474 496 474 497 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF571-202 - 609 7e-43 141.6 109.7 13 16 0.00047 0.49 11.4 0.5 1 23 502 524 502 525 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF571-202 - 609 7e-43 141.6 109.7 14 16 1.9e-05 0.02 15.7 0.9 1 23 530 552 530 553 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF571-202 - 609 7e-43 141.6 109.7 15 16 0.00016 0.16 12.8 0.2 1 23 558 580 558 581 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF571-202 - 609 7e-43 141.6 109.7 16 16 2.9e-05 0.031 15.1 2.0 1 23 586 608 586 609 0.95 C2H2-type zinc finger KRAB PF01352.27 42 ZNF571-202 - 609 2.4e-27 94.3 0.2 1 1 5e-30 5.3e-27 93.2 0.2 1 42 5 46 5 46 0.98 KRAB box zf-C2H2_6 PF13912.6 27 ZNF571-202 - 609 1.4e-22 79.2 118.5 1 16 0.015 16 5.6 2.0 2 24 139 161 138 163 0.85 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF571-202 - 609 1.4e-22 79.2 118.5 2 16 0.00044 0.47 10.5 0.3 2 24 195 217 195 218 0.91 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF571-202 - 609 1.4e-22 79.2 118.5 3 16 0.0058 6.1 7.0 0.3 2 24 223 245 223 248 0.90 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF571-202 - 609 1.4e-22 79.2 118.5 4 16 0.02 21 5.2 4.4 2 13 251 262 251 263 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF571-202 - 609 1.4e-22 79.2 118.5 5 16 0.034 36 4.5 0.1 2 11 279 288 279 299 0.95 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF571-202 - 609 1.4e-22 79.2 118.5 6 16 0.0064 6.8 6.8 2.8 2 11 307 316 307 327 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF571-202 - 609 1.4e-22 79.2 118.5 7 16 0.0035 3.7 7.7 0.8 2 11 335 344 335 357 0.90 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF571-202 - 609 1.4e-22 79.2 118.5 8 16 4.8e-05 0.05 13.6 1.6 2 24 363 385 363 388 0.90 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF571-202 - 609 1.4e-22 79.2 118.5 9 16 8.9e-05 0.094 12.7 0.4 2 24 391 413 391 416 0.89 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF571-202 - 609 1.4e-22 79.2 118.5 10 16 0.0019 2 8.5 2.3 2 22 419 439 419 443 0.82 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF571-202 - 609 1.4e-22 79.2 118.5 11 16 0.0014 1.4 9.0 0.3 2 11 447 456 447 467 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF571-202 - 609 1.4e-22 79.2 118.5 12 16 1.9e-05 0.02 14.9 1.3 1 21 473 493 473 498 0.83 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF571-202 - 609 1.4e-22 79.2 118.5 13 16 6e-05 0.063 13.3 0.8 2 26 502 526 502 527 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF571-202 - 609 1.4e-22 79.2 118.5 14 16 2.6e-06 0.0027 17.6 1.6 2 24 530 552 530 555 0.96 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF571-202 - 609 1.4e-22 79.2 118.5 15 16 3.2e-05 0.034 14.1 0.4 2 22 558 578 558 582 0.89 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF571-202 - 609 1.4e-22 79.2 118.5 16 16 0.49 5.1e+02 0.8 0.9 2 12 586 596 586 608 0.87 C2H2-type zinc finger zf-C2H2_jaz PF12171.8 27 ZNF571-202 - 609 2e-19 69.4 68.0 1 16 4.2 4.5e+03 -1.9 0.3 2 8 139 145 139 149 0.81 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF571-202 - 609 2e-19 69.4 68.0 2 16 0.0099 10 6.5 0.0 2 22 195 215 194 215 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF571-202 - 609 2e-19 69.4 68.0 3 16 0.0065 6.9 7.1 0.0 4 22 225 243 222 243 0.91 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF571-202 - 609 2e-19 69.4 68.0 4 16 9.2 9.7e+03 -2.9 2.0 2 12 251 261 250 271 0.75 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF571-202 - 609 2e-19 69.4 68.0 5 16 0.15 1.5e+02 2.8 0.1 2 20 279 297 278 299 0.76 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF571-202 - 609 2e-19 69.4 68.0 6 16 0.067 71 3.9 0.1 2 12 307 317 306 326 0.91 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF571-202 - 609 2e-19 69.4 68.0 7 16 0.013 13 6.2 0.5 2 22 335 355 334 355 0.91 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF571-202 - 609 2e-19 69.4 68.0 8 16 0.00081 0.85 10.0 0.0 2 22 363 383 362 383 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF571-202 - 609 2e-19 69.4 68.0 9 16 2.9e-05 0.03 14.6 0.2 2 22 391 411 390 411 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF571-202 - 609 2e-19 69.4 68.0 10 16 0.027 29 5.1 0.7 2 21 419 438 418 439 0.84 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF571-202 - 609 2e-19 69.4 68.0 11 16 0.00016 0.17 12.2 0.1 2 22 447 467 446 467 0.95 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF571-202 - 609 2e-19 69.4 68.0 12 16 0.00026 0.28 11.5 0.6 2 22 474 494 473 494 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF571-202 - 609 2e-19 69.4 68.0 13 16 0.0013 1.3 9.4 0.3 2 21 502 521 501 522 0.85 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF571-202 - 609 2e-19 69.4 68.0 14 16 0.00074 0.78 10.1 0.1 2 24 530 552 529 552 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF571-202 - 609 2e-19 69.4 68.0 15 16 0.014 15 6.0 0.0 2 21 558 577 557 578 0.88 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF571-202 - 609 2e-19 69.4 68.0 16 16 0.012 13 6.3 0.1 2 21 586 605 585 606 0.91 Zinc-finger double-stranded RNA-binding Zn-ribbon_8 PF09723.10 40 ZNF571-202 - 609 3.4e-16 59.1 92.5 1 11 0.077 81 3.5 1.7 6 18 139 151 138 171 0.70 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF571-202 - 609 3.4e-16 59.1 92.5 2 11 3.9e-05 0.042 14.0 1.5 6 35 195 231 194 235 0.89 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF571-202 - 609 3.4e-16 59.1 92.5 3 11 0.00011 0.12 12.5 5.9 6 34 251 286 250 289 0.92 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF571-202 - 609 3.4e-16 59.1 92.5 4 11 0.00026 0.27 11.4 4.4 6 34 279 314 278 318 0.90 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF571-202 - 609 3.4e-16 59.1 92.5 5 11 0.00014 0.15 12.2 2.6 6 34 307 342 306 345 0.91 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF571-202 - 609 3.4e-16 59.1 92.5 6 11 0.00054 0.57 10.3 5.7 6 35 335 371 334 375 0.91 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF571-202 - 609 3.4e-16 59.1 92.5 7 11 1.2e-05 0.013 15.6 2.1 6 34 391 426 390 429 0.92 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF571-202 - 609 3.4e-16 59.1 92.5 8 11 0.00019 0.2 11.8 6.0 6 38 419 458 418 460 0.89 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF571-202 - 609 3.4e-16 59.1 92.5 9 11 0.0017 1.8 8.8 6.5 6 34 474 509 473 511 0.89 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF571-202 - 609 3.4e-16 59.1 92.5 10 11 0.00011 0.12 12.5 4.2 6 35 502 538 501 541 0.92 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF571-202 - 609 3.4e-16 59.1 92.5 11 11 5.1e-05 0.054 13.6 4.1 6 36 558 595 557 597 0.90 Zinc ribbon domain zf_UBZ PF18439.1 32 ZNF571-202 - 609 5.5e-12 45.1 76.6 1 16 0.19 2e+02 1.7 0.2 3 12 139 148 137 151 0.84 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF571-202 - 609 5.5e-12 45.1 76.6 2 16 0.042 44 3.8 0.1 3 21 195 214 193 214 0.84 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF571-202 - 609 5.5e-12 45.1 76.6 3 16 0.0056 5.9 6.6 0.0 3 21 223 242 221 242 0.92 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF571-202 - 609 5.5e-12 45.1 76.6 4 16 0.08 85 2.9 1.6 3 13 251 261 249 263 0.87 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF571-202 - 609 5.5e-12 45.1 76.6 5 16 0.023 24 4.6 0.1 3 14 279 290 277 298 0.75 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF571-202 - 609 5.5e-12 45.1 76.6 6 16 0.023 24 4.6 0.1 3 12 307 316 305 325 0.82 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF571-202 - 609 5.5e-12 45.1 76.6 7 16 3.5e-05 0.037 13.6 0.6 3 21 335 354 333 354 0.95 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF571-202 - 609 5.5e-12 45.1 76.6 8 16 0.022 24 4.7 0.1 3 12 363 372 361 379 0.90 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF571-202 - 609 5.5e-12 45.1 76.6 9 16 0.0035 3.7 7.2 0.1 3 21 391 410 389 410 0.84 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF571-202 - 609 5.5e-12 45.1 76.6 10 16 0.00085 0.9 9.2 0.8 3 21 419 438 417 438 0.93 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF571-202 - 609 5.5e-12 45.1 76.6 11 16 0.036 38 4.0 0.1 3 13 447 457 445 466 0.78 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF571-202 - 609 5.5e-12 45.1 76.6 12 16 0.0028 2.9 7.6 0.3 2 18 473 490 472 493 0.77 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF571-202 - 609 5.5e-12 45.1 76.6 13 16 0.0055 5.8 6.6 0.2 3 21 502 521 500 521 0.86 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF571-202 - 609 5.5e-12 45.1 76.6 14 16 0.008 8.5 6.1 0.2 3 20 530 548 528 549 0.84 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF571-202 - 609 5.5e-12 45.1 76.6 15 16 0.027 28 4.4 0.1 3 16 558 572 556 577 0.77 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF571-202 - 609 5.5e-12 45.1 76.6 16 16 0.014 15 5.3 0.6 3 20 586 604 584 605 0.90 Ubiquitin-Binding Zinc Finger zf-trcl PF13451.6 48 ZNF571-202 - 609 1.4e-11 44.1 73.0 1 16 0.09 95 3.0 0.1 5 14 139 148 135 152 0.62 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF571-202 - 609 1.4e-11 44.1 73.0 2 16 0.22 2.3e+02 1.7 0.1 3 14 193 204 191 208 0.87 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF571-202 - 609 1.4e-11 44.1 73.0 3 16 0.041 43 4.1 0.0 3 15 221 233 219 236 0.89 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF571-202 - 609 1.4e-11 44.1 73.0 4 16 0.02 21 5.1 0.4 3 16 249 262 247 266 0.85 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF571-202 - 609 1.4e-11 44.1 73.0 5 16 0.0021 2.2 8.3 0.0 3 15 277 289 275 301 0.90 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF571-202 - 609 1.4e-11 44.1 73.0 6 16 0.01 11 6.0 0.0 3 15 305 317 303 320 0.90 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF571-202 - 609 1.4e-11 44.1 73.0 7 16 0.011 11 6.0 0.3 3 15 333 345 331 349 0.88 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF571-202 - 609 1.4e-11 44.1 73.0 8 16 0.0052 5.5 7.0 4.6 3 41 361 398 359 400 0.74 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF571-202 - 609 1.4e-11 44.1 73.0 9 16 0.012 12 5.8 0.3 3 15 389 401 387 404 0.88 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF571-202 - 609 1.4e-11 44.1 73.0 10 16 0.006 6.4 6.8 0.6 3 15 417 429 415 433 0.90 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF571-202 - 609 1.4e-11 44.1 73.0 11 16 0.0073 7.7 6.5 0.1 3 15 445 457 443 461 0.89 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF571-202 - 609 1.4e-11 44.1 73.0 12 16 0.00057 0.6 10.1 5.8 3 41 472 509 470 511 0.83 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF571-202 - 609 1.4e-11 44.1 73.0 13 16 0.006 6.3 6.8 0.4 3 16 500 513 498 516 0.87 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF571-202 - 609 1.4e-11 44.1 73.0 14 16 0.012 12 5.8 0.1 3 15 528 540 526 541 0.90 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF571-202 - 609 1.4e-11 44.1 73.0 15 16 0.044 46 4.0 0.1 3 14 556 567 554 568 0.87 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF571-202 - 609 1.4e-11 44.1 73.0 16 16 0.027 28 4.7 0.9 3 14 584 595 582 597 0.91 Probable zinc-ribbon domain XPA_N PF01286.18 32 ZNF571-202 - 609 6.7e-09 35.6 74.3 1 16 0.38 4e+02 1.2 1.6 3 11 140 148 139 153 0.85 XPA protein N-terminal XPA_N PF01286.18 32 ZNF571-202 - 609 6.7e-09 35.6 74.3 2 16 0.0054 5.6 7.1 0.1 3 12 196 205 194 211 0.89 XPA protein N-terminal XPA_N PF01286.18 32 ZNF571-202 - 609 6.7e-09 35.6 74.3 3 16 0.25 2.6e+02 1.8 0.0 3 12 224 233 222 241 0.80 XPA protein N-terminal XPA_N PF01286.18 32 ZNF571-202 - 609 6.7e-09 35.6 74.3 4 16 0.061 65 3.7 1.1 3 11 252 260 250 263 0.89 XPA protein N-terminal XPA_N PF01286.18 32 ZNF571-202 - 609 6.7e-09 35.6 74.3 5 16 0.031 33 4.6 0.1 3 11 280 288 278 295 0.86 XPA protein N-terminal XPA_N PF01286.18 32 ZNF571-202 - 609 6.7e-09 35.6 74.3 6 16 0.011 11 6.1 0.1 3 11 308 316 306 322 0.89 XPA protein N-terminal XPA_N PF01286.18 32 ZNF571-202 - 609 6.7e-09 35.6 74.3 7 16 0.0093 9.8 6.3 0.5 3 12 336 345 334 353 0.83 XPA protein N-terminal XPA_N PF01286.18 32 ZNF571-202 - 609 6.7e-09 35.6 74.3 8 16 0.0098 10 6.2 0.1 3 11 364 372 362 381 0.87 XPA protein N-terminal XPA_N PF01286.18 32 ZNF571-202 - 609 6.7e-09 35.6 74.3 9 16 0.0061 6.4 6.9 0.1 3 12 392 401 390 409 0.84 XPA protein N-terminal XPA_N PF01286.18 32 ZNF571-202 - 609 6.7e-09 35.6 74.3 10 16 0.021 22 5.2 1.1 3 11 420 428 418 431 0.90 XPA protein N-terminal XPA_N PF01286.18 32 ZNF571-202 - 609 6.7e-09 35.6 74.3 11 16 0.0068 7.1 6.8 0.1 3 12 448 457 446 465 0.80 XPA protein N-terminal XPA_N PF01286.18 32 ZNF571-202 - 609 6.7e-09 35.6 74.3 12 16 0.01 11 6.2 0.1 3 12 475 484 474 487 0.89 XPA protein N-terminal XPA_N PF01286.18 32 ZNF571-202 - 609 6.7e-09 35.6 74.3 13 16 0.011 12 6.1 0.2 3 12 503 512 501 520 0.78 XPA protein N-terminal XPA_N PF01286.18 32 ZNF571-202 - 609 6.7e-09 35.6 74.3 14 16 0.042 44 4.2 0.1 3 12 531 540 529 548 0.86 XPA protein N-terminal XPA_N PF01286.18 32 ZNF571-202 - 609 6.7e-09 35.6 74.3 15 16 0.033 35 4.6 0.2 3 12 559 568 557 569 0.88 XPA protein N-terminal XPA_N PF01286.18 32 ZNF571-202 - 609 6.7e-09 35.6 74.3 16 16 0.16 1.7e+02 2.3 0.3 3 11 587 595 585 604 0.83 XPA protein N-terminal # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF571-202.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF571-202.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF571-202.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF571-202.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF571-202.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:09:31 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZNF571-203 - 609 4.3e-130 418.9 116.2 1 17 0.00062 0.66 10.5 0.8 10 25 134 149 125 150 0.85 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF571-203 - 609 4.3e-130 418.9 116.2 2 17 4.8e-10 5.1e-07 29.8 0.0 3 25 183 205 181 206 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF571-203 - 609 4.3e-130 418.9 116.2 3 17 1.9e-10 2e-07 31.1 0.1 2 24 210 232 209 234 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF571-203 - 609 4.3e-130 418.9 116.2 4 17 2.6e-12 2.7e-09 37.0 1.3 2 25 238 261 237 262 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF571-203 - 609 4.3e-130 418.9 116.2 5 17 7.1e-10 7.5e-07 29.3 0.4 3 24 267 288 265 289 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF571-203 - 609 4.3e-130 418.9 116.2 6 17 1.8e-11 1.9e-08 34.3 0.4 2 24 294 316 293 317 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF571-203 - 609 4.3e-130 418.9 116.2 7 17 4.4e-10 4.7e-07 30.0 3.4 1 25 321 345 321 346 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF571-203 - 609 4.3e-130 418.9 116.2 8 17 8.6e-12 9.1e-09 35.4 1.1 2 24 350 372 349 374 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF571-203 - 609 4.3e-130 418.9 116.2 9 17 2e-11 2.1e-08 34.2 0.5 2 25 378 401 377 402 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF571-203 - 609 4.3e-130 418.9 116.2 10 17 1.4e-11 1.5e-08 34.7 1.1 1 24 405 428 405 430 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF571-203 - 609 4.3e-130 418.9 116.2 11 17 8.4e-12 8.8e-09 35.4 0.3 2 24 434 456 433 458 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF571-203 - 609 4.3e-130 418.9 116.2 12 17 1.2e-06 0.0013 19.1 2.6 2 26 462 485 461 485 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF571-203 - 609 4.3e-130 418.9 116.2 13 17 2e-12 2.2e-09 37.3 1.2 2 24 489 511 488 513 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF571-203 - 609 4.3e-130 418.9 116.2 14 17 4e-11 4.3e-08 33.2 0.3 2 24 517 539 516 541 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF571-203 - 609 4.3e-130 418.9 116.2 15 17 1.4e-11 1.5e-08 34.7 2.0 1 25 544 568 544 569 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF571-203 - 609 4.3e-130 418.9 116.2 16 17 1.2e-09 1.3e-06 28.6 1.1 2 24 573 595 572 597 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF571-203 - 609 4.3e-130 418.9 116.2 17 17 3.5 3.7e+03 -1.3 0.3 2 9 601 608 600 609 0.88 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZNF571-203 - 609 2e-76 248.4 111.1 1 17 0.00034 0.36 11.4 2.2 1 23 139 161 139 161 0.95 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF571-203 - 609 2e-76 248.4 111.1 2 17 1.5 1.6e+03 -0.1 0.1 9 21 175 187 166 188 0.87 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF571-203 - 609 2e-76 248.4 111.1 3 17 1.4e-07 0.00014 22.1 0.1 1 23 195 217 195 217 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF571-203 - 609 2e-76 248.4 111.1 4 17 1.6e-07 0.00017 21.8 0.1 1 23 223 245 223 245 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF571-203 - 609 2e-76 248.4 111.1 5 17 3.5e-07 0.00037 20.8 3.7 1 23 251 273 251 273 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF571-203 - 609 2e-76 248.4 111.1 6 17 7.7e-07 0.00081 19.7 0.2 1 23 279 301 279 301 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF571-203 - 609 2e-76 248.4 111.1 7 17 1.3e-06 0.0013 19.0 0.8 1 23 307 329 307 329 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF571-203 - 609 2e-76 248.4 111.1 8 17 0.00017 0.18 12.3 0.6 1 23 335 357 335 357 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF571-203 - 609 2e-76 248.4 111.1 9 17 1.5e-07 0.00016 21.9 1.1 1 23 363 385 363 385 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF571-203 - 609 2e-76 248.4 111.1 10 17 1.2e-09 1.3e-06 28.5 0.3 1 23 391 413 391 413 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF571-203 - 609 2e-76 248.4 111.1 11 17 0.00013 0.13 12.7 1.2 1 23 419 441 419 441 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF571-203 - 609 2e-76 248.4 111.1 12 17 2.1e-06 0.0022 18.4 0.1 1 23 447 469 447 469 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF571-203 - 609 2e-76 248.4 111.1 13 17 1.4e-08 1.4e-05 25.2 0.7 1 23 474 496 474 496 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF571-203 - 609 2e-76 248.4 111.1 14 17 5e-07 0.00053 20.3 0.4 1 23 502 524 502 524 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF571-203 - 609 2e-76 248.4 111.1 15 17 2.8e-08 3e-05 24.2 1.2 1 23 530 552 530 552 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF571-203 - 609 2e-76 248.4 111.1 16 17 3.1e-08 3.2e-05 24.1 0.2 1 23 558 580 558 580 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF571-203 - 609 2e-76 248.4 111.1 17 17 8.5e-06 0.009 16.4 2.8 1 23 586 608 586 608 0.99 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZNF571-203 - 609 7e-43 141.6 109.7 1 16 0.0002 0.21 12.5 2.0 1 23 139 161 139 162 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF571-203 - 609 7e-43 141.6 109.7 2 16 0.00012 0.13 13.2 0.1 1 23 195 217 195 218 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF571-203 - 609 7e-43 141.6 109.7 3 16 0.00092 0.97 10.5 0.2 1 23 223 245 223 246 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF571-203 - 609 7e-43 141.6 109.7 4 16 0.00069 0.72 10.8 3.3 1 23 251 273 251 274 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF571-203 - 609 7e-43 141.6 109.7 5 16 0.0013 1.4 10.0 0.2 1 23 279 301 279 302 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF571-203 - 609 7e-43 141.6 109.7 6 16 0.0019 2 9.4 0.8 1 23 307 329 307 330 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF571-203 - 609 7e-43 141.6 109.7 7 16 2.8e-05 0.03 15.2 0.8 1 23 335 357 335 358 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF571-203 - 609 7e-43 141.6 109.7 8 16 1.5e-05 0.016 16.0 1.0 1 23 363 385 363 386 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF571-203 - 609 7e-43 141.6 109.7 9 16 6.4e-06 0.0068 17.2 0.3 1 23 391 413 391 414 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF571-203 - 609 7e-43 141.6 109.7 10 16 3.8e-05 0.04 14.8 1.4 1 23 419 441 419 442 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF571-203 - 609 7e-43 141.6 109.7 11 16 0.00016 0.17 12.8 0.1 1 23 447 469 447 470 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF571-203 - 609 7e-43 141.6 109.7 12 16 1.5e-05 0.016 16.0 0.5 1 23 474 496 474 497 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF571-203 - 609 7e-43 141.6 109.7 13 16 0.00047 0.49 11.4 0.5 1 23 502 524 502 525 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF571-203 - 609 7e-43 141.6 109.7 14 16 1.9e-05 0.02 15.7 0.9 1 23 530 552 530 553 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF571-203 - 609 7e-43 141.6 109.7 15 16 0.00016 0.16 12.8 0.2 1 23 558 580 558 581 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF571-203 - 609 7e-43 141.6 109.7 16 16 2.9e-05 0.031 15.1 2.0 1 23 586 608 586 609 0.95 C2H2-type zinc finger KRAB PF01352.27 42 ZNF571-203 - 609 2.4e-27 94.3 0.2 1 1 5e-30 5.3e-27 93.2 0.2 1 42 5 46 5 46 0.98 KRAB box zf-C2H2_6 PF13912.6 27 ZNF571-203 - 609 1.4e-22 79.2 118.5 1 16 0.015 16 5.6 2.0 2 24 139 161 138 163 0.85 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF571-203 - 609 1.4e-22 79.2 118.5 2 16 0.00044 0.47 10.5 0.3 2 24 195 217 195 218 0.91 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF571-203 - 609 1.4e-22 79.2 118.5 3 16 0.0058 6.1 7.0 0.3 2 24 223 245 223 248 0.90 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF571-203 - 609 1.4e-22 79.2 118.5 4 16 0.02 21 5.2 4.4 2 13 251 262 251 263 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF571-203 - 609 1.4e-22 79.2 118.5 5 16 0.034 36 4.5 0.1 2 11 279 288 279 299 0.95 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF571-203 - 609 1.4e-22 79.2 118.5 6 16 0.0064 6.8 6.8 2.8 2 11 307 316 307 327 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF571-203 - 609 1.4e-22 79.2 118.5 7 16 0.0035 3.7 7.7 0.8 2 11 335 344 335 357 0.90 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF571-203 - 609 1.4e-22 79.2 118.5 8 16 4.8e-05 0.05 13.6 1.6 2 24 363 385 363 388 0.90 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF571-203 - 609 1.4e-22 79.2 118.5 9 16 8.9e-05 0.094 12.7 0.4 2 24 391 413 391 416 0.89 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF571-203 - 609 1.4e-22 79.2 118.5 10 16 0.0019 2 8.5 2.3 2 22 419 439 419 443 0.82 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF571-203 - 609 1.4e-22 79.2 118.5 11 16 0.0014 1.4 9.0 0.3 2 11 447 456 447 467 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF571-203 - 609 1.4e-22 79.2 118.5 12 16 1.9e-05 0.02 14.9 1.3 1 21 473 493 473 498 0.83 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF571-203 - 609 1.4e-22 79.2 118.5 13 16 6e-05 0.063 13.3 0.8 2 26 502 526 502 527 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF571-203 - 609 1.4e-22 79.2 118.5 14 16 2.6e-06 0.0027 17.6 1.6 2 24 530 552 530 555 0.96 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF571-203 - 609 1.4e-22 79.2 118.5 15 16 3.2e-05 0.034 14.1 0.4 2 22 558 578 558 582 0.89 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF571-203 - 609 1.4e-22 79.2 118.5 16 16 0.49 5.1e+02 0.8 0.9 2 12 586 596 586 608 0.87 C2H2-type zinc finger zf-C2H2_jaz PF12171.8 27 ZNF571-203 - 609 2e-19 69.4 68.0 1 16 4.2 4.5e+03 -1.9 0.3 2 8 139 145 139 149 0.81 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF571-203 - 609 2e-19 69.4 68.0 2 16 0.0099 10 6.5 0.0 2 22 195 215 194 215 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF571-203 - 609 2e-19 69.4 68.0 3 16 0.0065 6.9 7.1 0.0 4 22 225 243 222 243 0.91 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF571-203 - 609 2e-19 69.4 68.0 4 16 9.2 9.7e+03 -2.9 2.0 2 12 251 261 250 271 0.75 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF571-203 - 609 2e-19 69.4 68.0 5 16 0.15 1.5e+02 2.8 0.1 2 20 279 297 278 299 0.76 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF571-203 - 609 2e-19 69.4 68.0 6 16 0.067 71 3.9 0.1 2 12 307 317 306 326 0.91 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF571-203 - 609 2e-19 69.4 68.0 7 16 0.013 13 6.2 0.5 2 22 335 355 334 355 0.91 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF571-203 - 609 2e-19 69.4 68.0 8 16 0.00081 0.85 10.0 0.0 2 22 363 383 362 383 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF571-203 - 609 2e-19 69.4 68.0 9 16 2.9e-05 0.03 14.6 0.2 2 22 391 411 390 411 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF571-203 - 609 2e-19 69.4 68.0 10 16 0.027 29 5.1 0.7 2 21 419 438 418 439 0.84 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF571-203 - 609 2e-19 69.4 68.0 11 16 0.00016 0.17 12.2 0.1 2 22 447 467 446 467 0.95 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF571-203 - 609 2e-19 69.4 68.0 12 16 0.00026 0.28 11.5 0.6 2 22 474 494 473 494 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF571-203 - 609 2e-19 69.4 68.0 13 16 0.0013 1.3 9.4 0.3 2 21 502 521 501 522 0.85 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF571-203 - 609 2e-19 69.4 68.0 14 16 0.00074 0.78 10.1 0.1 2 24 530 552 529 552 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF571-203 - 609 2e-19 69.4 68.0 15 16 0.014 15 6.0 0.0 2 21 558 577 557 578 0.88 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF571-203 - 609 2e-19 69.4 68.0 16 16 0.012 13 6.3 0.1 2 21 586 605 585 606 0.91 Zinc-finger double-stranded RNA-binding Zn-ribbon_8 PF09723.10 40 ZNF571-203 - 609 3.4e-16 59.1 92.5 1 11 0.077 81 3.5 1.7 6 18 139 151 138 171 0.70 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF571-203 - 609 3.4e-16 59.1 92.5 2 11 3.9e-05 0.042 14.0 1.5 6 35 195 231 194 235 0.89 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF571-203 - 609 3.4e-16 59.1 92.5 3 11 0.00011 0.12 12.5 5.9 6 34 251 286 250 289 0.92 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF571-203 - 609 3.4e-16 59.1 92.5 4 11 0.00026 0.27 11.4 4.4 6 34 279 314 278 318 0.90 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF571-203 - 609 3.4e-16 59.1 92.5 5 11 0.00014 0.15 12.2 2.6 6 34 307 342 306 345 0.91 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF571-203 - 609 3.4e-16 59.1 92.5 6 11 0.00054 0.57 10.3 5.7 6 35 335 371 334 375 0.91 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF571-203 - 609 3.4e-16 59.1 92.5 7 11 1.2e-05 0.013 15.6 2.1 6 34 391 426 390 429 0.92 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF571-203 - 609 3.4e-16 59.1 92.5 8 11 0.00019 0.2 11.8 6.0 6 38 419 458 418 460 0.89 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF571-203 - 609 3.4e-16 59.1 92.5 9 11 0.0017 1.8 8.8 6.5 6 34 474 509 473 511 0.89 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF571-203 - 609 3.4e-16 59.1 92.5 10 11 0.00011 0.12 12.5 4.2 6 35 502 538 501 541 0.92 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF571-203 - 609 3.4e-16 59.1 92.5 11 11 5.1e-05 0.054 13.6 4.1 6 36 558 595 557 597 0.90 Zinc ribbon domain zf_UBZ PF18439.1 32 ZNF571-203 - 609 5.5e-12 45.1 76.6 1 16 0.19 2e+02 1.7 0.2 3 12 139 148 137 151 0.84 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF571-203 - 609 5.5e-12 45.1 76.6 2 16 0.042 44 3.8 0.1 3 21 195 214 193 214 0.84 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF571-203 - 609 5.5e-12 45.1 76.6 3 16 0.0056 5.9 6.6 0.0 3 21 223 242 221 242 0.92 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF571-203 - 609 5.5e-12 45.1 76.6 4 16 0.08 85 2.9 1.6 3 13 251 261 249 263 0.87 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF571-203 - 609 5.5e-12 45.1 76.6 5 16 0.023 24 4.6 0.1 3 14 279 290 277 298 0.75 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF571-203 - 609 5.5e-12 45.1 76.6 6 16 0.023 24 4.6 0.1 3 12 307 316 305 325 0.82 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF571-203 - 609 5.5e-12 45.1 76.6 7 16 3.5e-05 0.037 13.6 0.6 3 21 335 354 333 354 0.95 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF571-203 - 609 5.5e-12 45.1 76.6 8 16 0.022 24 4.7 0.1 3 12 363 372 361 379 0.90 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF571-203 - 609 5.5e-12 45.1 76.6 9 16 0.0035 3.7 7.2 0.1 3 21 391 410 389 410 0.84 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF571-203 - 609 5.5e-12 45.1 76.6 10 16 0.00085 0.9 9.2 0.8 3 21 419 438 417 438 0.93 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF571-203 - 609 5.5e-12 45.1 76.6 11 16 0.036 38 4.0 0.1 3 13 447 457 445 466 0.78 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF571-203 - 609 5.5e-12 45.1 76.6 12 16 0.0028 2.9 7.6 0.3 2 18 473 490 472 493 0.77 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF571-203 - 609 5.5e-12 45.1 76.6 13 16 0.0055 5.8 6.6 0.2 3 21 502 521 500 521 0.86 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF571-203 - 609 5.5e-12 45.1 76.6 14 16 0.008 8.5 6.1 0.2 3 20 530 548 528 549 0.84 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF571-203 - 609 5.5e-12 45.1 76.6 15 16 0.027 28 4.4 0.1 3 16 558 572 556 577 0.77 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF571-203 - 609 5.5e-12 45.1 76.6 16 16 0.014 15 5.3 0.6 3 20 586 604 584 605 0.90 Ubiquitin-Binding Zinc Finger zf-trcl PF13451.6 48 ZNF571-203 - 609 1.4e-11 44.1 73.0 1 16 0.09 95 3.0 0.1 5 14 139 148 135 152 0.62 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF571-203 - 609 1.4e-11 44.1 73.0 2 16 0.22 2.3e+02 1.7 0.1 3 14 193 204 191 208 0.87 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF571-203 - 609 1.4e-11 44.1 73.0 3 16 0.041 43 4.1 0.0 3 15 221 233 219 236 0.89 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF571-203 - 609 1.4e-11 44.1 73.0 4 16 0.02 21 5.1 0.4 3 16 249 262 247 266 0.85 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF571-203 - 609 1.4e-11 44.1 73.0 5 16 0.0021 2.2 8.3 0.0 3 15 277 289 275 301 0.90 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF571-203 - 609 1.4e-11 44.1 73.0 6 16 0.01 11 6.0 0.0 3 15 305 317 303 320 0.90 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF571-203 - 609 1.4e-11 44.1 73.0 7 16 0.011 11 6.0 0.3 3 15 333 345 331 349 0.88 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF571-203 - 609 1.4e-11 44.1 73.0 8 16 0.0052 5.5 7.0 4.6 3 41 361 398 359 400 0.74 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF571-203 - 609 1.4e-11 44.1 73.0 9 16 0.012 12 5.8 0.3 3 15 389 401 387 404 0.88 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF571-203 - 609 1.4e-11 44.1 73.0 10 16 0.006 6.4 6.8 0.6 3 15 417 429 415 433 0.90 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF571-203 - 609 1.4e-11 44.1 73.0 11 16 0.0073 7.7 6.5 0.1 3 15 445 457 443 461 0.89 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF571-203 - 609 1.4e-11 44.1 73.0 12 16 0.00057 0.6 10.1 5.8 3 41 472 509 470 511 0.83 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF571-203 - 609 1.4e-11 44.1 73.0 13 16 0.006 6.3 6.8 0.4 3 16 500 513 498 516 0.87 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF571-203 - 609 1.4e-11 44.1 73.0 14 16 0.012 12 5.8 0.1 3 15 528 540 526 541 0.90 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF571-203 - 609 1.4e-11 44.1 73.0 15 16 0.044 46 4.0 0.1 3 14 556 567 554 568 0.87 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF571-203 - 609 1.4e-11 44.1 73.0 16 16 0.027 28 4.7 0.9 3 14 584 595 582 597 0.91 Probable zinc-ribbon domain XPA_N PF01286.18 32 ZNF571-203 - 609 6.7e-09 35.6 74.3 1 16 0.38 4e+02 1.2 1.6 3 11 140 148 139 153 0.85 XPA protein N-terminal XPA_N PF01286.18 32 ZNF571-203 - 609 6.7e-09 35.6 74.3 2 16 0.0054 5.6 7.1 0.1 3 12 196 205 194 211 0.89 XPA protein N-terminal XPA_N PF01286.18 32 ZNF571-203 - 609 6.7e-09 35.6 74.3 3 16 0.25 2.6e+02 1.8 0.0 3 12 224 233 222 241 0.80 XPA protein N-terminal XPA_N PF01286.18 32 ZNF571-203 - 609 6.7e-09 35.6 74.3 4 16 0.061 65 3.7 1.1 3 11 252 260 250 263 0.89 XPA protein N-terminal XPA_N PF01286.18 32 ZNF571-203 - 609 6.7e-09 35.6 74.3 5 16 0.031 33 4.6 0.1 3 11 280 288 278 295 0.86 XPA protein N-terminal XPA_N PF01286.18 32 ZNF571-203 - 609 6.7e-09 35.6 74.3 6 16 0.011 11 6.1 0.1 3 11 308 316 306 322 0.89 XPA protein N-terminal XPA_N PF01286.18 32 ZNF571-203 - 609 6.7e-09 35.6 74.3 7 16 0.0093 9.8 6.3 0.5 3 12 336 345 334 353 0.83 XPA protein N-terminal XPA_N PF01286.18 32 ZNF571-203 - 609 6.7e-09 35.6 74.3 8 16 0.0098 10 6.2 0.1 3 11 364 372 362 381 0.87 XPA protein N-terminal XPA_N PF01286.18 32 ZNF571-203 - 609 6.7e-09 35.6 74.3 9 16 0.0061 6.4 6.9 0.1 3 12 392 401 390 409 0.84 XPA protein N-terminal XPA_N PF01286.18 32 ZNF571-203 - 609 6.7e-09 35.6 74.3 10 16 0.021 22 5.2 1.1 3 11 420 428 418 431 0.90 XPA protein N-terminal XPA_N PF01286.18 32 ZNF571-203 - 609 6.7e-09 35.6 74.3 11 16 0.0068 7.1 6.8 0.1 3 12 448 457 446 465 0.80 XPA protein N-terminal XPA_N PF01286.18 32 ZNF571-203 - 609 6.7e-09 35.6 74.3 12 16 0.01 11 6.2 0.1 3 12 475 484 474 487 0.89 XPA protein N-terminal XPA_N PF01286.18 32 ZNF571-203 - 609 6.7e-09 35.6 74.3 13 16 0.011 12 6.1 0.2 3 12 503 512 501 520 0.78 XPA protein N-terminal XPA_N PF01286.18 32 ZNF571-203 - 609 6.7e-09 35.6 74.3 14 16 0.042 44 4.2 0.1 3 12 531 540 529 548 0.86 XPA protein N-terminal XPA_N PF01286.18 32 ZNF571-203 - 609 6.7e-09 35.6 74.3 15 16 0.033 35 4.6 0.2 3 12 559 568 557 569 0.88 XPA protein N-terminal XPA_N PF01286.18 32 ZNF571-203 - 609 6.7e-09 35.6 74.3 16 16 0.16 1.7e+02 2.3 0.3 3 11 587 595 585 604 0.83 XPA protein N-terminal # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF571-203.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF571-203.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF571-203.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF571-203.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF571-203.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:09:31 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF571-204.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF571-204.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF571-204.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF571-204.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF571-204.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:09:32 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- KRAB PF01352.27 42 ZNF571-205 - 142 5.3e-28 96.4 0.3 1 1 5.4e-32 9.6e-28 95.6 0.3 1 41 5 45 5 46 0.97 KRAB box # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF571-205.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF571-205.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF571-205.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF571-205.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF571-205.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:09:32 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZNF571-206 - 609 4.3e-130 418.9 116.2 1 17 0.00062 0.66 10.5 0.8 10 25 134 149 125 150 0.85 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF571-206 - 609 4.3e-130 418.9 116.2 2 17 4.8e-10 5.1e-07 29.8 0.0 3 25 183 205 181 206 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF571-206 - 609 4.3e-130 418.9 116.2 3 17 1.9e-10 2e-07 31.1 0.1 2 24 210 232 209 234 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF571-206 - 609 4.3e-130 418.9 116.2 4 17 2.6e-12 2.7e-09 37.0 1.3 2 25 238 261 237 262 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF571-206 - 609 4.3e-130 418.9 116.2 5 17 7.1e-10 7.5e-07 29.3 0.4 3 24 267 288 265 289 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF571-206 - 609 4.3e-130 418.9 116.2 6 17 1.8e-11 1.9e-08 34.3 0.4 2 24 294 316 293 317 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF571-206 - 609 4.3e-130 418.9 116.2 7 17 4.4e-10 4.7e-07 30.0 3.4 1 25 321 345 321 346 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF571-206 - 609 4.3e-130 418.9 116.2 8 17 8.6e-12 9.1e-09 35.4 1.1 2 24 350 372 349 374 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF571-206 - 609 4.3e-130 418.9 116.2 9 17 2e-11 2.1e-08 34.2 0.5 2 25 378 401 377 402 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF571-206 - 609 4.3e-130 418.9 116.2 10 17 1.4e-11 1.5e-08 34.7 1.1 1 24 405 428 405 430 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF571-206 - 609 4.3e-130 418.9 116.2 11 17 8.4e-12 8.8e-09 35.4 0.3 2 24 434 456 433 458 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF571-206 - 609 4.3e-130 418.9 116.2 12 17 1.2e-06 0.0013 19.1 2.6 2 26 462 485 461 485 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF571-206 - 609 4.3e-130 418.9 116.2 13 17 2e-12 2.2e-09 37.3 1.2 2 24 489 511 488 513 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF571-206 - 609 4.3e-130 418.9 116.2 14 17 4e-11 4.3e-08 33.2 0.3 2 24 517 539 516 541 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF571-206 - 609 4.3e-130 418.9 116.2 15 17 1.4e-11 1.5e-08 34.7 2.0 1 25 544 568 544 569 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF571-206 - 609 4.3e-130 418.9 116.2 16 17 1.2e-09 1.3e-06 28.6 1.1 2 24 573 595 572 597 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF571-206 - 609 4.3e-130 418.9 116.2 17 17 3.5 3.7e+03 -1.3 0.3 2 9 601 608 600 609 0.88 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZNF571-206 - 609 2e-76 248.4 111.1 1 17 0.00034 0.36 11.4 2.2 1 23 139 161 139 161 0.95 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF571-206 - 609 2e-76 248.4 111.1 2 17 1.5 1.6e+03 -0.1 0.1 9 21 175 187 166 188 0.87 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF571-206 - 609 2e-76 248.4 111.1 3 17 1.4e-07 0.00014 22.1 0.1 1 23 195 217 195 217 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF571-206 - 609 2e-76 248.4 111.1 4 17 1.6e-07 0.00017 21.8 0.1 1 23 223 245 223 245 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF571-206 - 609 2e-76 248.4 111.1 5 17 3.5e-07 0.00037 20.8 3.7 1 23 251 273 251 273 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF571-206 - 609 2e-76 248.4 111.1 6 17 7.7e-07 0.00081 19.7 0.2 1 23 279 301 279 301 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF571-206 - 609 2e-76 248.4 111.1 7 17 1.3e-06 0.0013 19.0 0.8 1 23 307 329 307 329 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF571-206 - 609 2e-76 248.4 111.1 8 17 0.00017 0.18 12.3 0.6 1 23 335 357 335 357 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF571-206 - 609 2e-76 248.4 111.1 9 17 1.5e-07 0.00016 21.9 1.1 1 23 363 385 363 385 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF571-206 - 609 2e-76 248.4 111.1 10 17 1.2e-09 1.3e-06 28.5 0.3 1 23 391 413 391 413 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF571-206 - 609 2e-76 248.4 111.1 11 17 0.00013 0.13 12.7 1.2 1 23 419 441 419 441 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF571-206 - 609 2e-76 248.4 111.1 12 17 2.1e-06 0.0022 18.4 0.1 1 23 447 469 447 469 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF571-206 - 609 2e-76 248.4 111.1 13 17 1.4e-08 1.4e-05 25.2 0.7 1 23 474 496 474 496 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF571-206 - 609 2e-76 248.4 111.1 14 17 5e-07 0.00053 20.3 0.4 1 23 502 524 502 524 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF571-206 - 609 2e-76 248.4 111.1 15 17 2.8e-08 3e-05 24.2 1.2 1 23 530 552 530 552 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF571-206 - 609 2e-76 248.4 111.1 16 17 3.1e-08 3.2e-05 24.1 0.2 1 23 558 580 558 580 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF571-206 - 609 2e-76 248.4 111.1 17 17 8.5e-06 0.009 16.4 2.8 1 23 586 608 586 608 0.99 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZNF571-206 - 609 7e-43 141.6 109.7 1 16 0.0002 0.21 12.5 2.0 1 23 139 161 139 162 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF571-206 - 609 7e-43 141.6 109.7 2 16 0.00012 0.13 13.2 0.1 1 23 195 217 195 218 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF571-206 - 609 7e-43 141.6 109.7 3 16 0.00092 0.97 10.5 0.2 1 23 223 245 223 246 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF571-206 - 609 7e-43 141.6 109.7 4 16 0.00069 0.72 10.8 3.3 1 23 251 273 251 274 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF571-206 - 609 7e-43 141.6 109.7 5 16 0.0013 1.4 10.0 0.2 1 23 279 301 279 302 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF571-206 - 609 7e-43 141.6 109.7 6 16 0.0019 2 9.4 0.8 1 23 307 329 307 330 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF571-206 - 609 7e-43 141.6 109.7 7 16 2.8e-05 0.03 15.2 0.8 1 23 335 357 335 358 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF571-206 - 609 7e-43 141.6 109.7 8 16 1.5e-05 0.016 16.0 1.0 1 23 363 385 363 386 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF571-206 - 609 7e-43 141.6 109.7 9 16 6.4e-06 0.0068 17.2 0.3 1 23 391 413 391 414 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF571-206 - 609 7e-43 141.6 109.7 10 16 3.8e-05 0.04 14.8 1.4 1 23 419 441 419 442 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF571-206 - 609 7e-43 141.6 109.7 11 16 0.00016 0.17 12.8 0.1 1 23 447 469 447 470 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF571-206 - 609 7e-43 141.6 109.7 12 16 1.5e-05 0.016 16.0 0.5 1 23 474 496 474 497 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF571-206 - 609 7e-43 141.6 109.7 13 16 0.00047 0.49 11.4 0.5 1 23 502 524 502 525 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF571-206 - 609 7e-43 141.6 109.7 14 16 1.9e-05 0.02 15.7 0.9 1 23 530 552 530 553 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF571-206 - 609 7e-43 141.6 109.7 15 16 0.00016 0.16 12.8 0.2 1 23 558 580 558 581 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF571-206 - 609 7e-43 141.6 109.7 16 16 2.9e-05 0.031 15.1 2.0 1 23 586 608 586 609 0.95 C2H2-type zinc finger KRAB PF01352.27 42 ZNF571-206 - 609 2.4e-27 94.3 0.2 1 1 5e-30 5.3e-27 93.2 0.2 1 42 5 46 5 46 0.98 KRAB box zf-C2H2_6 PF13912.6 27 ZNF571-206 - 609 1.4e-22 79.2 118.5 1 16 0.015 16 5.6 2.0 2 24 139 161 138 163 0.85 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF571-206 - 609 1.4e-22 79.2 118.5 2 16 0.00044 0.47 10.5 0.3 2 24 195 217 195 218 0.91 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF571-206 - 609 1.4e-22 79.2 118.5 3 16 0.0058 6.1 7.0 0.3 2 24 223 245 223 248 0.90 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF571-206 - 609 1.4e-22 79.2 118.5 4 16 0.02 21 5.2 4.4 2 13 251 262 251 263 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF571-206 - 609 1.4e-22 79.2 118.5 5 16 0.034 36 4.5 0.1 2 11 279 288 279 299 0.95 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF571-206 - 609 1.4e-22 79.2 118.5 6 16 0.0064 6.8 6.8 2.8 2 11 307 316 307 327 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF571-206 - 609 1.4e-22 79.2 118.5 7 16 0.0035 3.7 7.7 0.8 2 11 335 344 335 357 0.90 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF571-206 - 609 1.4e-22 79.2 118.5 8 16 4.8e-05 0.05 13.6 1.6 2 24 363 385 363 388 0.90 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF571-206 - 609 1.4e-22 79.2 118.5 9 16 8.9e-05 0.094 12.7 0.4 2 24 391 413 391 416 0.89 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF571-206 - 609 1.4e-22 79.2 118.5 10 16 0.0019 2 8.5 2.3 2 22 419 439 419 443 0.82 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF571-206 - 609 1.4e-22 79.2 118.5 11 16 0.0014 1.4 9.0 0.3 2 11 447 456 447 467 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF571-206 - 609 1.4e-22 79.2 118.5 12 16 1.9e-05 0.02 14.9 1.3 1 21 473 493 473 498 0.83 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF571-206 - 609 1.4e-22 79.2 118.5 13 16 6e-05 0.063 13.3 0.8 2 26 502 526 502 527 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF571-206 - 609 1.4e-22 79.2 118.5 14 16 2.6e-06 0.0027 17.6 1.6 2 24 530 552 530 555 0.96 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF571-206 - 609 1.4e-22 79.2 118.5 15 16 3.2e-05 0.034 14.1 0.4 2 22 558 578 558 582 0.89 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF571-206 - 609 1.4e-22 79.2 118.5 16 16 0.49 5.1e+02 0.8 0.9 2 12 586 596 586 608 0.87 C2H2-type zinc finger zf-C2H2_jaz PF12171.8 27 ZNF571-206 - 609 2e-19 69.4 68.0 1 16 4.2 4.5e+03 -1.9 0.3 2 8 139 145 139 149 0.81 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF571-206 - 609 2e-19 69.4 68.0 2 16 0.0099 10 6.5 0.0 2 22 195 215 194 215 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF571-206 - 609 2e-19 69.4 68.0 3 16 0.0065 6.9 7.1 0.0 4 22 225 243 222 243 0.91 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF571-206 - 609 2e-19 69.4 68.0 4 16 9.2 9.7e+03 -2.9 2.0 2 12 251 261 250 271 0.75 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF571-206 - 609 2e-19 69.4 68.0 5 16 0.15 1.5e+02 2.8 0.1 2 20 279 297 278 299 0.76 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF571-206 - 609 2e-19 69.4 68.0 6 16 0.067 71 3.9 0.1 2 12 307 317 306 326 0.91 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF571-206 - 609 2e-19 69.4 68.0 7 16 0.013 13 6.2 0.5 2 22 335 355 334 355 0.91 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF571-206 - 609 2e-19 69.4 68.0 8 16 0.00081 0.85 10.0 0.0 2 22 363 383 362 383 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF571-206 - 609 2e-19 69.4 68.0 9 16 2.9e-05 0.03 14.6 0.2 2 22 391 411 390 411 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF571-206 - 609 2e-19 69.4 68.0 10 16 0.027 29 5.1 0.7 2 21 419 438 418 439 0.84 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF571-206 - 609 2e-19 69.4 68.0 11 16 0.00016 0.17 12.2 0.1 2 22 447 467 446 467 0.95 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF571-206 - 609 2e-19 69.4 68.0 12 16 0.00026 0.28 11.5 0.6 2 22 474 494 473 494 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF571-206 - 609 2e-19 69.4 68.0 13 16 0.0013 1.3 9.4 0.3 2 21 502 521 501 522 0.85 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF571-206 - 609 2e-19 69.4 68.0 14 16 0.00074 0.78 10.1 0.1 2 24 530 552 529 552 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF571-206 - 609 2e-19 69.4 68.0 15 16 0.014 15 6.0 0.0 2 21 558 577 557 578 0.88 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF571-206 - 609 2e-19 69.4 68.0 16 16 0.012 13 6.3 0.1 2 21 586 605 585 606 0.91 Zinc-finger double-stranded RNA-binding Zn-ribbon_8 PF09723.10 40 ZNF571-206 - 609 3.4e-16 59.1 92.5 1 11 0.077 81 3.5 1.7 6 18 139 151 138 171 0.70 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF571-206 - 609 3.4e-16 59.1 92.5 2 11 3.9e-05 0.042 14.0 1.5 6 35 195 231 194 235 0.89 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF571-206 - 609 3.4e-16 59.1 92.5 3 11 0.00011 0.12 12.5 5.9 6 34 251 286 250 289 0.92 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF571-206 - 609 3.4e-16 59.1 92.5 4 11 0.00026 0.27 11.4 4.4 6 34 279 314 278 318 0.90 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF571-206 - 609 3.4e-16 59.1 92.5 5 11 0.00014 0.15 12.2 2.6 6 34 307 342 306 345 0.91 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF571-206 - 609 3.4e-16 59.1 92.5 6 11 0.00054 0.57 10.3 5.7 6 35 335 371 334 375 0.91 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF571-206 - 609 3.4e-16 59.1 92.5 7 11 1.2e-05 0.013 15.6 2.1 6 34 391 426 390 429 0.92 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF571-206 - 609 3.4e-16 59.1 92.5 8 11 0.00019 0.2 11.8 6.0 6 38 419 458 418 460 0.89 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF571-206 - 609 3.4e-16 59.1 92.5 9 11 0.0017 1.8 8.8 6.5 6 34 474 509 473 511 0.89 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF571-206 - 609 3.4e-16 59.1 92.5 10 11 0.00011 0.12 12.5 4.2 6 35 502 538 501 541 0.92 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF571-206 - 609 3.4e-16 59.1 92.5 11 11 5.1e-05 0.054 13.6 4.1 6 36 558 595 557 597 0.90 Zinc ribbon domain zf_UBZ PF18439.1 32 ZNF571-206 - 609 5.5e-12 45.1 76.6 1 16 0.19 2e+02 1.7 0.2 3 12 139 148 137 151 0.84 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF571-206 - 609 5.5e-12 45.1 76.6 2 16 0.042 44 3.8 0.1 3 21 195 214 193 214 0.84 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF571-206 - 609 5.5e-12 45.1 76.6 3 16 0.0056 5.9 6.6 0.0 3 21 223 242 221 242 0.92 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF571-206 - 609 5.5e-12 45.1 76.6 4 16 0.08 85 2.9 1.6 3 13 251 261 249 263 0.87 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF571-206 - 609 5.5e-12 45.1 76.6 5 16 0.023 24 4.6 0.1 3 14 279 290 277 298 0.75 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF571-206 - 609 5.5e-12 45.1 76.6 6 16 0.023 24 4.6 0.1 3 12 307 316 305 325 0.82 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF571-206 - 609 5.5e-12 45.1 76.6 7 16 3.5e-05 0.037 13.6 0.6 3 21 335 354 333 354 0.95 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF571-206 - 609 5.5e-12 45.1 76.6 8 16 0.022 24 4.7 0.1 3 12 363 372 361 379 0.90 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF571-206 - 609 5.5e-12 45.1 76.6 9 16 0.0035 3.7 7.2 0.1 3 21 391 410 389 410 0.84 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF571-206 - 609 5.5e-12 45.1 76.6 10 16 0.00085 0.9 9.2 0.8 3 21 419 438 417 438 0.93 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF571-206 - 609 5.5e-12 45.1 76.6 11 16 0.036 38 4.0 0.1 3 13 447 457 445 466 0.78 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF571-206 - 609 5.5e-12 45.1 76.6 12 16 0.0028 2.9 7.6 0.3 2 18 473 490 472 493 0.77 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF571-206 - 609 5.5e-12 45.1 76.6 13 16 0.0055 5.8 6.6 0.2 3 21 502 521 500 521 0.86 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF571-206 - 609 5.5e-12 45.1 76.6 14 16 0.008 8.5 6.1 0.2 3 20 530 548 528 549 0.84 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF571-206 - 609 5.5e-12 45.1 76.6 15 16 0.027 28 4.4 0.1 3 16 558 572 556 577 0.77 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF571-206 - 609 5.5e-12 45.1 76.6 16 16 0.014 15 5.3 0.6 3 20 586 604 584 605 0.90 Ubiquitin-Binding Zinc Finger zf-trcl PF13451.6 48 ZNF571-206 - 609 1.4e-11 44.1 73.0 1 16 0.09 95 3.0 0.1 5 14 139 148 135 152 0.62 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF571-206 - 609 1.4e-11 44.1 73.0 2 16 0.22 2.3e+02 1.7 0.1 3 14 193 204 191 208 0.87 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF571-206 - 609 1.4e-11 44.1 73.0 3 16 0.041 43 4.1 0.0 3 15 221 233 219 236 0.89 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF571-206 - 609 1.4e-11 44.1 73.0 4 16 0.02 21 5.1 0.4 3 16 249 262 247 266 0.85 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF571-206 - 609 1.4e-11 44.1 73.0 5 16 0.0021 2.2 8.3 0.0 3 15 277 289 275 301 0.90 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF571-206 - 609 1.4e-11 44.1 73.0 6 16 0.01 11 6.0 0.0 3 15 305 317 303 320 0.90 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF571-206 - 609 1.4e-11 44.1 73.0 7 16 0.011 11 6.0 0.3 3 15 333 345 331 349 0.88 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF571-206 - 609 1.4e-11 44.1 73.0 8 16 0.0052 5.5 7.0 4.6 3 41 361 398 359 400 0.74 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF571-206 - 609 1.4e-11 44.1 73.0 9 16 0.012 12 5.8 0.3 3 15 389 401 387 404 0.88 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF571-206 - 609 1.4e-11 44.1 73.0 10 16 0.006 6.4 6.8 0.6 3 15 417 429 415 433 0.90 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF571-206 - 609 1.4e-11 44.1 73.0 11 16 0.0073 7.7 6.5 0.1 3 15 445 457 443 461 0.89 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF571-206 - 609 1.4e-11 44.1 73.0 12 16 0.00057 0.6 10.1 5.8 3 41 472 509 470 511 0.83 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF571-206 - 609 1.4e-11 44.1 73.0 13 16 0.006 6.3 6.8 0.4 3 16 500 513 498 516 0.87 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF571-206 - 609 1.4e-11 44.1 73.0 14 16 0.012 12 5.8 0.1 3 15 528 540 526 541 0.90 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF571-206 - 609 1.4e-11 44.1 73.0 15 16 0.044 46 4.0 0.1 3 14 556 567 554 568 0.87 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF571-206 - 609 1.4e-11 44.1 73.0 16 16 0.027 28 4.7 0.9 3 14 584 595 582 597 0.91 Probable zinc-ribbon domain XPA_N PF01286.18 32 ZNF571-206 - 609 6.7e-09 35.6 74.3 1 16 0.38 4e+02 1.2 1.6 3 11 140 148 139 153 0.85 XPA protein N-terminal XPA_N PF01286.18 32 ZNF571-206 - 609 6.7e-09 35.6 74.3 2 16 0.0054 5.6 7.1 0.1 3 12 196 205 194 211 0.89 XPA protein N-terminal XPA_N PF01286.18 32 ZNF571-206 - 609 6.7e-09 35.6 74.3 3 16 0.25 2.6e+02 1.8 0.0 3 12 224 233 222 241 0.80 XPA protein N-terminal XPA_N PF01286.18 32 ZNF571-206 - 609 6.7e-09 35.6 74.3 4 16 0.061 65 3.7 1.1 3 11 252 260 250 263 0.89 XPA protein N-terminal XPA_N PF01286.18 32 ZNF571-206 - 609 6.7e-09 35.6 74.3 5 16 0.031 33 4.6 0.1 3 11 280 288 278 295 0.86 XPA protein N-terminal XPA_N PF01286.18 32 ZNF571-206 - 609 6.7e-09 35.6 74.3 6 16 0.011 11 6.1 0.1 3 11 308 316 306 322 0.89 XPA protein N-terminal XPA_N PF01286.18 32 ZNF571-206 - 609 6.7e-09 35.6 74.3 7 16 0.0093 9.8 6.3 0.5 3 12 336 345 334 353 0.83 XPA protein N-terminal XPA_N PF01286.18 32 ZNF571-206 - 609 6.7e-09 35.6 74.3 8 16 0.0098 10 6.2 0.1 3 11 364 372 362 381 0.87 XPA protein N-terminal XPA_N PF01286.18 32 ZNF571-206 - 609 6.7e-09 35.6 74.3 9 16 0.0061 6.4 6.9 0.1 3 12 392 401 390 409 0.84 XPA protein N-terminal XPA_N PF01286.18 32 ZNF571-206 - 609 6.7e-09 35.6 74.3 10 16 0.021 22 5.2 1.1 3 11 420 428 418 431 0.90 XPA protein N-terminal XPA_N PF01286.18 32 ZNF571-206 - 609 6.7e-09 35.6 74.3 11 16 0.0068 7.1 6.8 0.1 3 12 448 457 446 465 0.80 XPA protein N-terminal XPA_N PF01286.18 32 ZNF571-206 - 609 6.7e-09 35.6 74.3 12 16 0.01 11 6.2 0.1 3 12 475 484 474 487 0.89 XPA protein N-terminal XPA_N PF01286.18 32 ZNF571-206 - 609 6.7e-09 35.6 74.3 13 16 0.011 12 6.1 0.2 3 12 503 512 501 520 0.78 XPA protein N-terminal XPA_N PF01286.18 32 ZNF571-206 - 609 6.7e-09 35.6 74.3 14 16 0.042 44 4.2 0.1 3 12 531 540 529 548 0.86 XPA protein N-terminal XPA_N PF01286.18 32 ZNF571-206 - 609 6.7e-09 35.6 74.3 15 16 0.033 35 4.6 0.2 3 12 559 568 557 569 0.88 XPA protein N-terminal XPA_N PF01286.18 32 ZNF571-206 - 609 6.7e-09 35.6 74.3 16 16 0.16 1.7e+02 2.3 0.3 3 11 587 595 585 604 0.83 XPA protein N-terminal # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF571-206.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF571-206.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF571-206.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF571-206.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF571-206.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:09:33 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZNF57-201 - 555 1e-91 297.6 129.4 1 15 5e-06 0.0032 17.8 1.0 2 26 127 151 126 151 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF57-201 - 555 1e-91 297.6 129.4 2 15 0.37 2.4e+02 2.4 0.1 1 9 154 162 154 177 0.81 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF57-201 - 555 1e-91 297.6 129.4 3 15 0.00036 0.23 12.0 1.3 10 24 191 205 181 207 0.81 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF57-201 - 555 1e-91 297.6 129.4 4 15 1.1e-06 0.00069 19.9 2.7 2 25 211 234 210 234 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF57-201 - 555 1e-91 297.6 129.4 5 15 4.8e-09 3e-06 27.4 1.4 2 24 239 261 238 263 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF57-201 - 555 1e-91 297.6 129.4 6 15 1.5e-10 9.3e-08 32.2 4.3 2 25 267 290 266 291 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF57-201 - 555 1e-91 297.6 129.4 7 15 8.8e-12 5.6e-09 36.0 2.2 1 25 294 318 294 318 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF57-201 - 555 1e-91 297.6 129.4 8 15 1.3e-10 8.5e-08 32.3 1.0 2 26 323 347 322 347 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF57-201 - 555 1e-91 297.6 129.4 9 15 3.2e-11 2e-08 34.3 1.1 3 25 352 374 350 374 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF57-201 - 555 1e-91 297.6 129.4 10 15 9.6e-09 6.2e-06 26.4 0.5 2 26 379 403 378 403 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF57-201 - 555 1e-91 297.6 129.4 11 15 3.2e-11 2.1e-08 34.2 1.8 2 25 407 430 406 430 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF57-201 - 555 1e-91 297.6 129.4 12 15 1.2e-07 7.8e-05 22.9 2.9 2 26 435 459 434 459 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF57-201 - 555 1e-91 297.6 129.4 13 15 3.7e-11 2.4e-08 34.1 1.0 3 25 464 486 462 486 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF57-201 - 555 1e-91 297.6 129.4 14 15 3.4e-08 2.2e-05 24.7 4.2 4 25 493 514 491 514 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF57-201 - 555 1e-91 297.6 129.4 15 15 5.1e-07 0.00033 21.0 1.9 2 25 519 542 518 543 0.93 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZNF57-201 - 555 5e-49 162.1 137.4 1 15 7.2 4.6e+03 -1.6 0.9 13 20 97 104 95 105 0.84 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF57-201 - 555 5e-49 162.1 137.4 2 15 3.7e-06 0.0024 18.2 4.3 1 23 140 162 140 162 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF57-201 - 555 5e-49 162.1 137.4 3 15 2 1.3e+03 0.2 0.4 5 22 172 189 169 189 0.81 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF57-201 - 555 5e-49 162.1 137.4 4 15 0.00012 0.075 13.5 4.8 1 23 196 218 196 218 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF57-201 - 555 5e-49 162.1 137.4 5 15 3.7e-05 0.023 15.1 1.3 1 23 224 246 224 246 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF57-201 - 555 5e-49 162.1 137.4 6 15 3.1e-08 2e-05 24.8 1.2 1 23 252 274 252 274 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF57-201 - 555 5e-49 162.1 137.4 7 15 3.8e-07 0.00024 21.4 2.9 1 23 280 302 280 302 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF57-201 - 555 5e-49 162.1 137.4 8 15 1.6e-07 0.0001 22.6 0.6 1 23 308 330 308 330 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF57-201 - 555 5e-49 162.1 137.4 9 15 2.3e-07 0.00015 22.0 3.1 1 23 336 358 336 358 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF57-201 - 555 5e-49 162.1 137.4 10 15 9.6e-06 0.0061 16.9 0.5 1 23 364 386 364 386 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF57-201 - 555 5e-49 162.1 137.4 11 15 2.2e-07 0.00014 22.1 1.6 1 23 392 414 392 414 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF57-201 - 555 5e-49 162.1 137.4 12 15 6.5e-06 0.0042 17.5 1.0 1 23 420 442 420 442 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF57-201 - 555 5e-49 162.1 137.4 13 15 3.4e-06 0.0022 18.4 3.6 1 23 448 470 448 470 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF57-201 - 555 5e-49 162.1 137.4 14 15 7.1e-06 0.0045 17.4 2.7 1 23 476 498 476 498 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF57-201 - 555 5e-49 162.1 137.4 15 15 0.00018 0.11 13.0 6.7 1 23 504 526 504 526 0.98 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZNF57-201 - 555 2.6e-43 142.9 129.2 1 14 8.3 5.3e+03 -1.2 0.1 14 20 98 104 88 106 0.74 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF57-201 - 555 2.6e-43 142.9 129.2 2 14 6.7e-05 0.043 14.7 3.6 1 23 140 162 140 162 0.97 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF57-201 - 555 2.6e-43 142.9 129.2 3 14 8.2e-05 0.052 14.4 3.8 1 23 196 218 196 219 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF57-201 - 555 2.6e-43 142.9 129.2 4 14 5.9e-05 0.038 14.8 1.0 1 23 224 246 224 247 0.97 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF57-201 - 555 2.6e-43 142.9 129.2 5 14 4.9e-06 0.0032 18.2 0.8 1 23 252 274 252 275 0.97 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF57-201 - 555 2.6e-43 142.9 129.2 6 14 6.7e-07 0.00043 20.9 2.4 1 23 280 302 280 303 0.97 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF57-201 - 555 2.6e-43 142.9 129.2 7 14 1.9e-06 0.0012 19.5 0.7 1 23 308 330 308 331 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF57-201 - 555 2.6e-43 142.9 129.2 8 14 2.8e-07 0.00018 22.1 2.4 1 23 336 358 336 359 0.97 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF57-201 - 555 2.6e-43 142.9 129.2 9 14 0.00011 0.068 14.0 0.7 1 23 364 386 364 387 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF57-201 - 555 2.6e-43 142.9 129.2 10 14 2e-07 0.00013 22.5 1.2 1 23 392 414 392 415 0.97 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF57-201 - 555 2.6e-43 142.9 129.2 11 14 3.5e-05 0.022 15.6 1.0 1 23 420 442 420 443 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF57-201 - 555 2.6e-43 142.9 129.2 12 14 2.2e-06 0.0014 19.3 3.0 1 23 448 470 448 471 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF57-201 - 555 2.6e-43 142.9 129.2 13 14 1.1e-05 0.007 17.1 2.1 1 23 476 498 476 499 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF57-201 - 555 2.6e-43 142.9 129.2 14 14 0.002 1.3 10.1 5.5 1 23 504 526 504 527 0.86 C2H2-type zinc finger zf-C2H2_jaz PF12171.8 27 ZNF57-201 - 555 4.8e-26 90.4 66.2 1 13 0.1 66 4.0 0.7 2 24 140 162 139 162 0.91 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF57-201 - 555 4.8e-26 90.4 66.2 2 13 0.37 2.4e+02 2.2 1.0 2 23 196 217 195 218 0.85 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF57-201 - 555 4.8e-26 90.4 66.2 3 13 0.086 55 4.2 0.5 2 24 224 246 223 248 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF57-201 - 555 4.8e-26 90.4 66.2 4 13 0.00036 0.23 11.8 0.1 2 24 252 274 251 274 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF57-201 - 555 4.8e-26 90.4 66.2 5 13 5e-05 0.032 14.5 1.1 2 24 280 302 279 302 0.95 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF57-201 - 555 4.8e-26 90.4 66.2 6 13 0.0014 0.89 9.9 0.0 2 22 308 328 307 328 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF57-201 - 555 4.8e-26 90.4 66.2 7 13 1.6e-06 0.001 19.3 0.7 2 24 336 358 335 358 0.95 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF57-201 - 555 4.8e-26 90.4 66.2 8 13 0.021 13 6.2 0.1 2 22 364 384 363 384 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF57-201 - 555 4.8e-26 90.4 66.2 9 13 3.7e-05 0.023 15.0 0.2 2 24 392 414 391 414 0.95 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF57-201 - 555 4.8e-26 90.4 66.2 10 13 0.003 1.9 8.9 0.1 2 22 420 440 419 440 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF57-201 - 555 4.8e-26 90.4 66.2 11 13 5.6e-06 0.0036 17.6 0.2 2 22 448 468 447 468 0.95 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF57-201 - 555 4.8e-26 90.4 66.2 12 13 0.0026 1.7 9.0 0.2 2 22 476 496 475 496 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF57-201 - 555 4.8e-26 90.4 66.2 13 13 0.0026 1.6 9.1 0.8 2 22 504 524 503 524 0.94 Zinc-finger double-stranded RNA-binding KRAB PF01352.27 42 ZNF57-201 - 555 2.9e-24 84.4 0.7 1 1 9e-27 5.7e-24 83.5 0.7 1 42 3 44 3 44 0.98 KRAB box zf-C2H2_11 PF16622.5 29 ZNF57-201 - 555 4.3e-20 71.2 73.3 1 13 0.00084 0.54 10.1 0.4 6 24 141 159 138 160 0.93 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF57-201 - 555 4.3e-20 71.2 73.3 2 13 0.12 75 3.2 0.3 5 23 196 214 192 216 0.80 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF57-201 - 555 4.3e-20 71.2 73.3 3 13 0.016 10 6.0 0.3 3 25 222 244 221 246 0.90 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF57-201 - 555 4.3e-20 71.2 73.3 4 13 0.0019 1.2 8.9 0.1 5 24 252 271 251 273 0.91 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF57-201 - 555 4.3e-20 71.2 73.3 5 13 0.00071 0.45 10.3 0.1 5 23 280 298 277 300 0.92 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF57-201 - 555 4.3e-20 71.2 73.3 6 13 0.00071 0.45 10.3 0.1 6 26 309 329 306 330 0.94 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF57-201 - 555 4.3e-20 71.2 73.3 7 13 0.00037 0.24 11.2 2.5 5 25 336 356 335 358 0.92 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF57-201 - 555 4.3e-20 71.2 73.3 8 13 0.013 8.6 6.2 0.1 6 26 365 385 362 386 0.90 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF57-201 - 555 4.3e-20 71.2 73.3 9 13 0.00016 0.11 12.3 2.1 5 25 392 412 390 414 0.93 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF57-201 - 555 4.3e-20 71.2 73.3 10 13 0.013 8.4 6.3 0.1 6 26 421 441 418 442 0.90 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF57-201 - 555 4.3e-20 71.2 73.3 11 13 0.00019 0.12 12.1 1.9 5 26 448 469 445 470 0.93 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF57-201 - 555 4.3e-20 71.2 73.3 12 13 0.0027 1.8 8.4 0.2 6 26 477 497 474 498 0.92 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF57-201 - 555 4.3e-20 71.2 73.3 13 13 0.0025 1.6 8.5 1.7 5 26 504 525 501 526 0.94 zinc-finger C2H2-type Zn-ribbon_8 PF09723.10 40 ZNF57-201 - 555 4.9e-19 68.2 67.9 1 11 0.0011 0.71 10.0 0.4 6 29 140 163 139 167 0.84 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF57-201 - 555 4.9e-19 68.2 67.9 2 11 0.00071 0.46 10.6 4.8 6 33 196 230 195 233 0.90 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF57-201 - 555 4.9e-19 68.2 67.9 3 11 0.025 16 5.7 5.8 6 34 224 259 223 262 0.75 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF57-201 - 555 4.9e-19 68.2 67.9 4 11 0.0015 0.94 9.6 5.4 6 34 252 287 251 290 0.77 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF57-201 - 555 4.9e-19 68.2 67.9 5 11 0.00037 0.24 11.6 6.2 6 34 280 315 279 318 0.75 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF57-201 - 555 4.9e-19 68.2 67.9 6 11 1.4e-05 0.0092 16.1 3.2 6 35 308 344 306 351 0.82 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF57-201 - 555 4.9e-19 68.2 67.9 7 11 0.00034 0.22 11.7 4.8 6 34 336 371 334 374 0.79 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF57-201 - 555 4.9e-19 68.2 67.9 8 11 9.4e-05 0.06 13.5 5.0 6 35 364 400 363 407 0.85 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF57-201 - 555 4.9e-19 68.2 67.9 9 11 0.0022 1.4 9.1 0.4 6 20 392 406 391 412 0.85 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF57-201 - 555 4.9e-19 68.2 67.9 10 11 1.6e-06 0.0011 19.1 1.8 6 35 420 456 419 463 0.85 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF57-201 - 555 4.9e-19 68.2 67.9 11 11 4.4e-06 0.0028 17.7 1.7 6 33 476 510 475 514 0.89 Zinc ribbon domain zf-trcl PF13451.6 48 ZNF57-201 - 555 4.5e-15 55.3 59.3 1 11 0.44 2.8e+02 1.5 0.1 3 13 138 148 132 154 0.66 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF57-201 - 555 4.5e-15 55.3 59.3 2 11 0.18 1.2e+02 2.7 4.6 2 41 193 231 192 234 0.66 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF57-201 - 555 4.5e-15 55.3 59.3 3 11 0.00027 0.17 11.8 0.1 1 22 248 269 248 275 0.86 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF57-201 - 555 4.5e-15 55.3 59.3 4 11 0.0035 2.2 8.2 0.2 3 21 278 296 276 301 0.85 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF57-201 - 555 4.5e-15 55.3 59.3 5 11 0.0017 1.1 9.2 0.2 3 18 306 321 304 322 0.89 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF57-201 - 555 4.5e-15 55.3 59.3 6 11 0.014 8.9 6.3 0.1 2 15 333 346 332 354 0.88 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF57-201 - 555 4.5e-15 55.3 59.3 7 11 0.00042 0.27 11.2 0.2 3 18 362 377 360 382 0.89 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF57-201 - 555 4.5e-15 55.3 59.3 8 11 0.067 43 4.1 0.1 4 15 391 402 388 405 0.84 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF57-201 - 555 4.5e-15 55.3 59.3 9 11 0.0031 2 8.4 5.4 3 39 418 453 416 461 0.72 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF57-201 - 555 4.5e-15 55.3 59.3 10 11 0.00028 0.18 11.7 0.1 3 18 474 489 472 491 0.90 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF57-201 - 555 4.5e-15 55.3 59.3 11 11 0.015 9.3 6.2 0.2 3 17 502 516 500 519 0.85 Probable zinc-ribbon domain zf-C2H2_6 PF13912.6 27 ZNF57-201 - 555 3e-10 39.9 110.4 1 13 0.26 1.6e+02 2.4 5.7 2 24 140 162 140 164 0.97 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF57-201 - 555 3e-10 39.9 110.4 2 13 0.09 58 3.9 0.4 2 12 196 206 196 210 0.95 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF57-201 - 555 3e-10 39.9 110.4 3 13 1.8 1.1e+03 -0.3 0.5 2 12 224 234 223 248 0.73 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF57-201 - 555 3e-10 39.9 110.4 4 13 0.012 7.5 6.7 0.3 2 11 252 261 252 263 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF57-201 - 555 3e-10 39.9 110.4 5 13 0.002 1.3 9.2 3.3 2 24 280 302 280 305 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF57-201 - 555 3e-10 39.9 110.4 6 13 0.00014 0.09 12.8 0.3 2 21 308 327 308 331 0.75 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF57-201 - 555 3e-10 39.9 110.4 7 13 0.0013 0.82 9.7 3.2 2 24 336 358 335 361 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF57-201 - 555 3e-10 39.9 110.4 8 13 0.0025 1.6 8.8 0.8 2 11 364 373 364 374 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF57-201 - 555 3e-10 39.9 110.4 9 13 3.3e-06 0.0021 18.0 1.6 2 24 392 414 391 417 0.95 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF57-201 - 555 3e-10 39.9 110.4 10 13 0.00084 0.54 10.3 1.2 2 11 420 429 420 430 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF57-201 - 555 3e-10 39.9 110.4 11 13 0.0053 3.4 7.8 3.3 2 24 448 470 447 473 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF57-201 - 555 3e-10 39.9 110.4 12 13 0.00084 0.54 10.3 1.2 2 11 476 485 476 486 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF57-201 - 555 3e-10 39.9 110.4 13 13 0.018 11 6.1 1.1 2 12 504 514 504 529 0.84 C2H2-type zinc finger zinc_ribbon_15 PF17032.5 86 ZNF57-201 - 555 2.8e-09 37.6 65.3 1 10 1.1 7e+02 1.1 0.7 64 75 114 149 63 154 0.59 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF57-201 - 555 2.8e-09 37.6 65.3 2 10 7.6 4.9e+03 -1.6 7.8 34 75 136 205 127 210 0.71 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF57-201 - 555 2.8e-09 37.6 65.3 3 10 0.00087 0.55 11.0 3.0 34 76 192 234 187 242 0.87 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF57-201 - 555 2.8e-09 37.6 65.3 4 10 0.0013 0.83 10.4 2.5 30 74 216 260 209 268 0.90 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF57-201 - 555 2.8e-09 37.6 65.3 5 10 0.0015 0.96 10.2 1.0 29 76 243 290 236 295 0.85 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF57-201 - 555 2.8e-09 37.6 65.3 6 10 0.0015 0.98 10.2 2.7 32 75 274 317 265 323 0.84 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF57-201 - 555 2.8e-09 37.6 65.3 7 10 1.6e-05 0.01 16.6 0.8 29 79 327 377 322 382 0.90 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF57-201 - 555 2.8e-09 37.6 65.3 8 10 1.1e-05 0.0068 17.1 1.4 29 80 383 434 375 438 0.89 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF57-201 - 555 2.8e-09 37.6 65.3 9 10 5.2e-05 0.033 14.9 1.3 29 75 439 485 430 491 0.90 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF57-201 - 555 2.8e-09 37.6 65.3 10 10 0.084 54 4.6 1.4 31 70 497 536 493 546 0.83 zinc-ribbon family Zn_ribbon_SprT PF17283.2 38 ZNF57-201 - 555 3e-09 36.6 71.8 1 11 0.00085 0.54 10.2 3.0 5 28 140 164 139 166 0.89 SprT-like zinc ribbon domain Zn_ribbon_SprT PF17283.2 38 ZNF57-201 - 555 3e-09 36.6 71.8 2 11 0.041 26 4.8 1.3 24 35 191 206 176 209 0.57 SprT-like zinc ribbon domain Zn_ribbon_SprT PF17283.2 38 ZNF57-201 - 555 3e-09 36.6 71.8 3 11 0.02 13 5.8 5.6 5 35 196 234 195 237 0.79 SprT-like zinc ribbon domain Zn_ribbon_SprT PF17283.2 38 ZNF57-201 - 555 3e-09 36.6 71.8 4 11 4e-06 0.0026 17.6 4.6 5 33 252 288 251 291 0.94 SprT-like zinc ribbon domain Zn_ribbon_SprT PF17283.2 38 ZNF57-201 - 555 3e-09 36.6 71.8 5 11 1.6e-05 0.01 15.8 2.9 5 34 280 317 279 321 0.94 SprT-like zinc ribbon domain Zn_ribbon_SprT PF17283.2 38 ZNF57-201 - 555 3e-09 36.6 71.8 6 11 0.00091 0.58 10.1 2.3 5 32 336 371 335 375 0.93 SprT-like zinc ribbon domain Zn_ribbon_SprT PF17283.2 38 ZNF57-201 - 555 3e-09 36.6 71.8 7 11 0.00024 0.15 12.0 2.0 5 34 392 429 391 433 0.94 SprT-like zinc ribbon domain Zn_ribbon_SprT PF17283.2 38 ZNF57-201 - 555 3e-09 36.6 71.8 8 11 0.2 1.3e+02 2.6 3.9 5 34 420 457 420 461 0.85 SprT-like zinc ribbon domain Zn_ribbon_SprT PF17283.2 38 ZNF57-201 - 555 3e-09 36.6 71.8 9 11 0.013 8.5 6.4 1.9 5 34 448 485 447 489 0.86 SprT-like zinc ribbon domain Zn_ribbon_SprT PF17283.2 38 ZNF57-201 - 555 3e-09 36.6 71.8 10 11 0.0039 2.5 8.1 1.7 5 31 476 510 475 515 0.81 SprT-like zinc ribbon domain Zn_ribbon_SprT PF17283.2 38 ZNF57-201 - 555 3e-09 36.6 71.8 11 11 0.099 63 3.6 0.5 5 23 504 522 503 526 0.85 SprT-like zinc ribbon domain zf_UBZ PF18439.1 32 ZNF57-201 - 555 1.5e-08 34.1 55.8 1 13 0.7 4.5e+02 0.6 0.1 3 12 140 149 138 155 0.84 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF57-201 - 555 1.5e-08 34.1 55.8 2 13 0.004 2.6 7.7 0.6 3 20 196 213 194 214 0.92 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF57-201 - 555 1.5e-08 34.1 55.8 3 13 0.072 46 3.7 0.1 2 11 223 232 222 238 0.85 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF57-201 - 555 1.5e-08 34.1 55.8 4 13 0.044 28 4.4 0.1 3 12 252 261 250 271 0.76 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF57-201 - 555 1.5e-08 34.1 55.8 5 13 0.026 17 5.1 0.3 3 20 280 298 278 299 0.78 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF57-201 - 555 1.5e-08 34.1 55.8 6 13 0.012 7.5 6.2 0.1 3 13 308 318 306 323 0.85 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF57-201 - 555 1.5e-08 34.1 55.8 7 13 0.0048 3.1 7.5 0.1 3 20 336 354 334 355 0.85 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF57-201 - 555 1.5e-08 34.1 55.8 8 13 0.021 13 5.4 0.2 3 20 364 382 362 382 0.79 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF57-201 - 555 1.5e-08 34.1 55.8 9 13 0.0044 2.8 7.6 0.1 2 15 391 404 390 411 0.80 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF57-201 - 555 1.5e-08 34.1 55.8 10 13 0.0096 6.2 6.5 0.2 3 20 420 438 418 438 0.81 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF57-201 - 555 1.5e-08 34.1 55.8 11 13 0.02 13 5.5 0.2 3 20 448 466 446 467 0.84 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF57-201 - 555 1.5e-08 34.1 55.8 12 13 0.027 17 5.1 0.1 3 12 476 485 474 493 0.87 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF57-201 - 555 1.5e-08 34.1 55.8 13 13 0.17 1.1e+02 2.5 0.2 3 13 504 514 502 523 0.78 Ubiquitin-Binding Zinc Finger # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF57-201.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF57-201.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF57-201.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF57-201.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF57-201.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:09:33 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF57-202.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF57-202.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF57-202.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF57-202.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF57-202.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:09:33 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZNF57-203 - 523 3e-92 299.3 129.1 1 15 5.4e-06 0.003 17.9 1.0 2 26 95 119 94 119 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF57-203 - 523 3e-92 299.3 129.1 2 15 0.4 2.2e+02 2.5 0.1 1 9 122 130 122 145 0.81 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF57-203 - 523 3e-92 299.3 129.1 3 15 0.00038 0.21 12.1 1.3 10 24 159 173 149 175 0.81 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF57-203 - 523 3e-92 299.3 129.1 4 15 1.2e-06 0.00065 20.0 2.7 2 25 179 202 178 202 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF57-203 - 523 3e-92 299.3 129.1 5 15 5.1e-09 2.8e-06 27.5 1.4 2 24 207 229 206 231 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF57-203 - 523 3e-92 299.3 129.1 6 15 1.5e-10 8.7e-08 32.3 4.3 2 25 235 258 234 259 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF57-203 - 523 3e-92 299.3 129.1 7 15 9.4e-12 5.3e-09 36.1 2.2 1 25 262 286 262 286 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF57-203 - 523 3e-92 299.3 129.1 8 15 1.4e-10 7.9e-08 32.4 1.0 2 26 291 315 290 315 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF57-203 - 523 3e-92 299.3 129.1 9 15 3.4e-11 1.9e-08 34.4 1.1 3 25 320 342 318 342 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF57-203 - 523 3e-92 299.3 129.1 10 15 1e-08 5.8e-06 26.5 0.5 2 26 347 371 346 371 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF57-203 - 523 3e-92 299.3 129.1 11 15 3.4e-11 1.9e-08 34.3 1.8 2 25 375 398 374 398 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF57-203 - 523 3e-92 299.3 129.1 12 15 1.3e-07 7.3e-05 23.0 2.9 2 26 403 427 402 427 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF57-203 - 523 3e-92 299.3 129.1 13 15 3.9e-11 2.2e-08 34.2 1.0 3 25 432 454 430 454 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF57-203 - 523 3e-92 299.3 129.1 14 15 3.6e-08 2e-05 24.8 4.2 4 25 461 482 459 482 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF57-203 - 523 3e-92 299.3 129.1 15 15 5.5e-07 0.00031 21.1 1.9 2 25 487 510 486 511 0.93 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZNF57-203 - 523 1.8e-49 163.5 137.4 1 15 7.7 4.3e+03 -1.5 0.9 13 20 65 72 63 73 0.84 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF57-203 - 523 1.8e-49 163.5 137.4 2 15 4e-06 0.0022 18.3 4.3 1 23 108 130 108 130 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF57-203 - 523 1.8e-49 163.5 137.4 3 15 2.2 1.2e+03 0.3 0.4 5 22 140 157 137 157 0.81 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF57-203 - 523 1.8e-49 163.5 137.4 4 15 0.00012 0.07 13.6 4.8 1 23 164 186 164 186 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF57-203 - 523 1.8e-49 163.5 137.4 5 15 3.9e-05 0.022 15.2 1.3 1 23 192 214 192 214 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF57-203 - 523 1.8e-49 163.5 137.4 6 15 3.3e-08 1.9e-05 24.9 1.2 1 23 220 242 220 242 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF57-203 - 523 1.8e-49 163.5 137.4 7 15 4e-07 0.00023 21.5 2.9 1 23 248 270 248 270 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF57-203 - 523 1.8e-49 163.5 137.4 8 15 1.7e-07 9.4e-05 22.7 0.6 1 23 276 298 276 298 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF57-203 - 523 1.8e-49 163.5 137.4 9 15 2.5e-07 0.00014 22.1 3.1 1 23 304 326 304 326 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF57-203 - 523 1.8e-49 163.5 137.4 10 15 1e-05 0.0057 17.0 0.5 1 23 332 354 332 354 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF57-203 - 523 1.8e-49 163.5 137.4 11 15 2.4e-07 0.00013 22.2 1.6 1 23 360 382 360 382 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF57-203 - 523 1.8e-49 163.5 137.4 12 15 6.9e-06 0.0039 17.6 1.0 1 23 388 410 388 410 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF57-203 - 523 1.8e-49 163.5 137.4 13 15 3.6e-06 0.002 18.5 3.6 1 23 416 438 416 438 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF57-203 - 523 1.8e-49 163.5 137.4 14 15 7.5e-06 0.0042 17.5 2.7 1 23 444 466 444 466 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF57-203 - 523 1.8e-49 163.5 137.4 15 15 0.00019 0.11 13.1 6.7 1 23 472 494 472 494 0.98 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZNF57-203 - 523 9.4e-44 144.3 129.2 1 14 8.9 5e+03 -1.1 0.1 14 20 66 72 56 74 0.74 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF57-203 - 523 9.4e-44 144.3 129.2 2 14 7.1e-05 0.04 14.8 3.6 1 23 108 130 108 130 0.97 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF57-203 - 523 9.4e-44 144.3 129.2 3 14 8.7e-05 0.049 14.5 3.8 1 23 164 186 164 187 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF57-203 - 523 9.4e-44 144.3 129.2 4 14 6.3e-05 0.035 14.9 1.0 1 23 192 214 192 215 0.97 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF57-203 - 523 9.4e-44 144.3 129.2 5 14 5.2e-06 0.0029 18.3 0.8 1 23 220 242 220 243 0.97 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF57-203 - 523 9.4e-44 144.3 129.2 6 14 7.1e-07 0.0004 21.0 2.4 1 23 248 270 248 271 0.97 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF57-203 - 523 9.4e-44 144.3 129.2 7 14 2.1e-06 0.0011 19.6 0.7 1 23 276 298 276 299 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF57-203 - 523 9.4e-44 144.3 129.2 8 14 3e-07 0.00017 22.2 2.4 1 23 304 326 304 327 0.97 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF57-203 - 523 9.4e-44 144.3 129.2 9 14 0.00011 0.064 14.1 0.7 1 23 332 354 332 355 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF57-203 - 523 9.4e-44 144.3 129.2 10 14 2.1e-07 0.00012 22.6 1.2 1 23 360 382 360 383 0.97 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF57-203 - 523 9.4e-44 144.3 129.2 11 14 3.7e-05 0.021 15.7 1.0 1 23 388 410 388 411 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF57-203 - 523 9.4e-44 144.3 129.2 12 14 2.4e-06 0.0013 19.3 3.0 1 23 416 438 416 439 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF57-203 - 523 9.4e-44 144.3 129.2 13 14 1.2e-05 0.0065 17.2 2.1 1 23 444 466 444 467 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF57-203 - 523 9.4e-44 144.3 129.2 14 14 0.0021 1.2 10.2 5.5 1 23 472 494 472 495 0.86 C2H2-type zinc finger zf-C2H2_jaz PF12171.8 27 ZNF57-203 - 523 1.9e-26 91.7 66.2 1 13 0.11 62 4.1 0.7 2 24 108 130 107 130 0.91 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF57-203 - 523 1.9e-26 91.7 66.2 2 13 0.39 2.2e+02 2.3 1.0 2 23 164 185 163 186 0.85 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF57-203 - 523 1.9e-26 91.7 66.2 3 13 0.092 51 4.3 0.5 2 24 192 214 191 216 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF57-203 - 523 1.9e-26 91.7 66.2 4 13 0.00038 0.21 11.9 0.1 2 24 220 242 219 242 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF57-203 - 523 1.9e-26 91.7 66.2 5 13 5.3e-05 0.03 14.6 1.1 2 24 248 270 247 270 0.95 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF57-203 - 523 1.9e-26 91.7 66.2 6 13 0.0015 0.83 10.0 0.0 2 22 276 296 275 296 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF57-203 - 523 1.9e-26 91.7 66.2 7 13 1.7e-06 0.00096 19.4 0.7 2 24 304 326 303 326 0.95 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF57-203 - 523 1.9e-26 91.7 66.2 8 13 0.022 12 6.3 0.1 2 22 332 352 331 352 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF57-203 - 523 1.9e-26 91.7 66.2 9 13 3.9e-05 0.022 15.1 0.2 2 24 360 382 359 382 0.95 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF57-203 - 523 1.9e-26 91.7 66.2 10 13 0.0032 1.8 9.0 0.1 2 22 388 408 387 408 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF57-203 - 523 1.9e-26 91.7 66.2 11 13 6e-06 0.0033 17.6 0.2 2 22 416 436 415 436 0.95 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF57-203 - 523 1.9e-26 91.7 66.2 12 13 0.0028 1.6 9.1 0.2 2 22 444 464 443 464 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF57-203 - 523 1.9e-26 91.7 66.2 13 13 0.0027 1.5 9.2 0.8 2 22 472 492 471 492 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_11 PF16622.5 29 ZNF57-203 - 523 1.7e-20 72.4 73.3 1 13 0.00089 0.5 10.2 0.4 6 24 109 127 106 128 0.93 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF57-203 - 523 1.7e-20 72.4 73.3 2 13 0.13 70 3.3 0.3 5 23 164 182 160 184 0.80 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF57-203 - 523 1.7e-20 72.4 73.3 3 13 0.017 9.4 6.1 0.3 3 25 190 212 189 214 0.90 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF57-203 - 523 1.7e-20 72.4 73.3 4 13 0.002 1.1 9.0 0.1 5 24 220 239 219 241 0.91 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF57-203 - 523 1.7e-20 72.4 73.3 5 13 0.00076 0.42 10.4 0.1 5 23 248 266 245 268 0.92 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF57-203 - 523 1.7e-20 72.4 73.3 6 13 0.00075 0.42 10.4 0.1 6 26 277 297 274 298 0.94 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF57-203 - 523 1.7e-20 72.4 73.3 7 13 0.00039 0.22 11.3 2.5 5 25 304 324 303 326 0.92 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF57-203 - 523 1.7e-20 72.4 73.3 8 13 0.014 8 6.3 0.1 6 26 333 353 330 354 0.90 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF57-203 - 523 1.7e-20 72.4 73.3 9 13 0.00018 0.098 12.4 2.1 5 25 360 380 358 382 0.93 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF57-203 - 523 1.7e-20 72.4 73.3 10 13 0.014 7.8 6.3 0.1 6 26 389 409 386 410 0.90 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF57-203 - 523 1.7e-20 72.4 73.3 11 13 0.00021 0.12 12.2 1.9 5 26 416 437 413 438 0.93 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF57-203 - 523 1.7e-20 72.4 73.3 12 13 0.0029 1.6 8.5 0.2 6 26 445 465 442 466 0.92 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF57-203 - 523 1.7e-20 72.4 73.3 13 13 0.0027 1.5 8.6 1.7 5 26 472 493 469 494 0.94 zinc-finger C2H2-type Zn-ribbon_8 PF09723.10 40 ZNF57-203 - 523 2.6e-19 69.1 68.0 1 11 0.0012 0.66 10.1 0.4 6 29 108 131 107 135 0.84 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF57-203 - 523 2.6e-19 69.1 68.0 2 11 0.00074 0.41 10.8 4.8 6 33 164 198 163 202 0.90 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF57-203 - 523 2.6e-19 69.1 68.0 3 11 0.038 21 5.3 6.3 6 34 192 227 190 229 0.76 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF57-203 - 523 2.6e-19 69.1 68.0 4 11 0.0014 0.77 9.9 5.2 6 35 220 256 219 258 0.77 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF57-203 - 523 2.6e-19 69.1 68.0 5 11 0.00046 0.26 11.4 6.1 6 34 248 283 247 285 0.76 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF57-203 - 523 2.6e-19 69.1 68.0 6 11 1.8e-05 0.01 16.0 3.4 6 35 276 312 274 319 0.82 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF57-203 - 523 2.6e-19 69.1 68.0 7 11 0.0036 2 8.6 0.4 6 20 304 318 302 327 0.84 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF57-203 - 523 2.6e-19 69.1 68.0 8 11 8.2e-05 0.046 13.9 4.6 6 35 332 368 331 373 0.86 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF57-203 - 523 2.6e-19 69.1 68.0 9 11 0.0025 1.4 9.1 0.4 6 20 360 374 358 379 0.85 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF57-203 - 523 2.6e-19 69.1 68.0 10 11 1.7e-06 0.00098 19.2 1.8 6 35 388 424 387 431 0.85 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF57-203 - 523 2.6e-19 69.1 68.0 11 11 4.6e-06 0.0026 17.8 1.7 6 33 444 478 443 482 0.89 Zinc ribbon domain zf-trcl PF13451.6 48 ZNF57-203 - 523 1.6e-15 56.7 59.1 1 12 0.48 2.7e+02 1.6 0.1 3 14 106 117 100 122 0.66 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF57-203 - 523 1.6e-15 56.7 59.1 2 12 0.17 93 3.0 4.5 2 41 161 199 160 203 0.67 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF57-203 - 523 1.6e-15 56.7 59.1 3 12 0.00029 0.17 11.8 0.1 1 22 216 237 216 242 0.86 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF57-203 - 523 1.6e-15 56.7 59.1 4 12 0.0037 2.1 8.3 0.2 3 21 246 264 244 269 0.85 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF57-203 - 523 1.6e-15 56.7 59.1 5 12 0.0019 1 9.3 0.2 3 18 274 289 272 290 0.89 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF57-203 - 523 1.6e-15 56.7 59.1 6 12 0.015 8.3 6.4 0.1 2 15 301 314 300 322 0.88 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF57-203 - 523 1.6e-15 56.7 59.1 7 12 0.00045 0.25 11.3 0.2 3 18 330 345 328 350 0.89 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF57-203 - 523 1.6e-15 56.7 59.1 8 12 0.072 40 4.2 0.1 4 15 359 370 356 373 0.84 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF57-203 - 523 1.6e-15 56.7 59.1 9 12 0.0036 2 8.3 5.1 3 23 386 406 384 424 0.68 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF57-203 - 523 1.6e-15 56.7 59.1 10 12 0.33 1.8e+02 2.1 0.5 5 15 416 426 412 433 0.82 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF57-203 - 523 1.6e-15 56.7 59.1 11 12 0.0003 0.17 11.8 0.1 3 18 442 457 440 459 0.90 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF57-203 - 523 1.6e-15 56.7 59.1 12 12 0.016 8.7 6.3 0.2 3 17 470 484 468 487 0.85 Probable zinc-ribbon domain zf-C2H2_6 PF13912.6 27 ZNF57-203 - 523 1.2e-10 41.1 110.4 1 13 0.27 1.5e+02 2.5 5.7 2 24 108 130 108 132 0.97 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF57-203 - 523 1.2e-10 41.1 110.4 2 13 0.096 54 3.9 0.4 2 12 164 174 164 178 0.95 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF57-203 - 523 1.2e-10 41.1 110.4 3 13 1.9 1.1e+03 -0.2 0.5 2 12 192 202 191 216 0.73 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF57-203 - 523 1.2e-10 41.1 110.4 4 13 0.012 7 6.8 0.3 2 11 220 229 220 231 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF57-203 - 523 1.2e-10 41.1 110.4 5 13 0.0021 1.2 9.3 3.3 2 24 248 270 248 273 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF57-203 - 523 1.2e-10 41.1 110.4 6 13 0.00015 0.084 12.9 0.3 2 21 276 295 276 299 0.75 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF57-203 - 523 1.2e-10 41.1 110.4 7 13 0.0014 0.76 9.8 3.2 2 24 304 326 303 329 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF57-203 - 523 1.2e-10 41.1 110.4 8 13 0.0027 1.5 8.9 0.8 2 11 332 341 332 342 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF57-203 - 523 1.2e-10 41.1 110.4 9 13 3.6e-06 0.002 18.1 1.6 2 24 360 382 359 385 0.95 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF57-203 - 523 1.2e-10 41.1 110.4 10 13 0.0009 0.5 10.4 1.2 2 11 388 397 388 398 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF57-203 - 523 1.2e-10 41.1 110.4 11 13 0.0057 3.2 7.9 3.3 2 24 416 438 415 441 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF57-203 - 523 1.2e-10 41.1 110.4 12 13 0.0009 0.5 10.4 1.2 2 11 444 453 444 454 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF57-203 - 523 1.2e-10 41.1 110.4 13 13 0.019 11 6.2 1.1 2 12 472 482 472 497 0.84 C2H2-type zinc finger zinc_ribbon_15 PF17032.5 86 ZNF57-203 - 523 1.3e-09 38.7 65.0 1 9 1.1 6.4e+02 1.2 0.6 64 75 83 117 33 122 0.58 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF57-203 - 523 1.3e-09 38.7 65.0 2 9 7 3.9e+03 -1.3 7.6 34 75 104 173 95 178 0.71 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF57-203 - 523 1.3e-09 38.7 65.0 3 9 0.011 5.9 7.7 7.2 38 76 164 202 155 235 0.63 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF57-203 - 523 1.3e-09 38.7 65.0 4 9 0.0019 1.1 10.1 1.2 29 76 211 258 205 263 0.85 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF57-203 - 523 1.3e-09 38.7 65.0 5 9 0.0017 0.93 10.3 2.7 32 75 242 285 234 291 0.84 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF57-203 - 523 1.3e-09 38.7 65.0 6 9 1.7e-05 0.0097 16.6 0.9 29 79 295 345 290 350 0.90 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF57-203 - 523 1.3e-09 38.7 65.0 7 9 1.3e-05 0.0071 17.1 1.6 29 80 351 402 344 406 0.90 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF57-203 - 523 1.3e-09 38.7 65.0 8 9 6.4e-05 0.036 14.8 1.3 29 76 407 454 402 460 0.91 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF57-203 - 523 1.3e-09 38.7 65.0 9 9 0.084 47 4.8 1.4 31 70 465 504 460 514 0.83 zinc-ribbon family Zn_ribbon_SprT PF17283.2 38 ZNF57-203 - 523 3.3e-09 36.5 72.8 1 11 0.0009 0.51 10.3 3.0 5 28 108 132 107 134 0.89 SprT-like zinc ribbon domain Zn_ribbon_SprT PF17283.2 38 ZNF57-203 - 523 3.3e-09 36.5 72.8 2 11 0.053 29 4.7 1.6 24 35 159 174 144 177 0.57 SprT-like zinc ribbon domain Zn_ribbon_SprT PF17283.2 38 ZNF57-203 - 523 3.3e-09 36.5 72.8 3 11 0.023 13 5.8 5.8 5 35 164 202 163 205 0.79 SprT-like zinc ribbon domain Zn_ribbon_SprT PF17283.2 38 ZNF57-203 - 523 3.3e-09 36.5 72.8 4 11 3.4e-06 0.0019 18.0 4.1 5 32 220 255 219 258 0.95 SprT-like zinc ribbon domain Zn_ribbon_SprT PF17283.2 38 ZNF57-203 - 523 3.3e-09 36.5 72.8 5 11 1.8e-05 0.0099 15.8 3.0 5 34 248 285 247 289 0.94 SprT-like zinc ribbon domain Zn_ribbon_SprT PF17283.2 38 ZNF57-203 - 523 3.3e-09 36.5 72.8 6 11 0.00096 0.54 10.2 2.3 5 32 304 339 303 343 0.93 SprT-like zinc ribbon domain Zn_ribbon_SprT PF17283.2 38 ZNF57-203 - 523 3.3e-09 36.5 72.8 7 11 0.00027 0.15 12.0 2.1 5 34 360 397 359 401 0.94 SprT-like zinc ribbon domain Zn_ribbon_SprT PF17283.2 38 ZNF57-203 - 523 3.3e-09 36.5 72.8 8 11 0.37 2.1e+02 1.9 0.6 18 34 407 425 400 429 0.68 SprT-like zinc ribbon domain Zn_ribbon_SprT PF17283.2 38 ZNF57-203 - 523 3.3e-09 36.5 72.8 9 11 0.015 8.3 6.4 2.0 5 34 416 453 415 457 0.86 SprT-like zinc ribbon domain Zn_ribbon_SprT PF17283.2 38 ZNF57-203 - 523 3.3e-09 36.5 72.8 10 11 0.0048 2.7 8.0 1.9 5 31 444 478 443 483 0.81 SprT-like zinc ribbon domain Zn_ribbon_SprT PF17283.2 38 ZNF57-203 - 523 3.3e-09 36.5 72.8 11 11 0.098 55 3.8 0.5 5 23 472 490 471 503 0.87 SprT-like zinc ribbon domain zf_UBZ PF18439.1 32 ZNF57-203 - 523 6.2e-09 35.3 55.8 1 13 0.75 4.2e+02 0.7 0.1 3 12 108 117 106 123 0.84 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF57-203 - 523 6.2e-09 35.3 55.8 2 13 0.0043 2.4 7.8 0.6 3 20 164 181 162 182 0.92 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF57-203 - 523 6.2e-09 35.3 55.8 3 13 0.077 43 3.8 0.1 2 11 191 200 190 206 0.85 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF57-203 - 523 6.2e-09 35.3 55.8 4 13 0.047 27 4.5 0.1 3 12 220 229 218 239 0.76 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF57-203 - 523 6.2e-09 35.3 55.8 5 13 0.028 16 5.2 0.3 3 20 248 266 246 267 0.78 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF57-203 - 523 6.2e-09 35.3 55.8 6 13 0.013 7 6.3 0.1 3 13 276 286 274 291 0.85 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF57-203 - 523 6.2e-09 35.3 55.8 7 13 0.0051 2.9 7.6 0.1 3 20 304 322 302 323 0.85 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF57-203 - 523 6.2e-09 35.3 55.8 8 13 0.023 13 5.5 0.2 3 20 332 350 330 350 0.79 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF57-203 - 523 6.2e-09 35.3 55.8 9 13 0.0047 2.6 7.7 0.1 2 15 359 372 358 379 0.80 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF57-203 - 523 6.2e-09 35.3 55.8 10 13 0.01 5.8 6.6 0.2 3 20 388 406 386 406 0.81 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF57-203 - 523 6.2e-09 35.3 55.8 11 13 0.021 12 5.6 0.2 3 20 416 434 414 435 0.84 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF57-203 - 523 6.2e-09 35.3 55.8 12 13 0.029 16 5.2 0.1 3 12 444 453 442 461 0.87 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF57-203 - 523 6.2e-09 35.3 55.8 13 13 0.18 1e+02 2.6 0.2 3 13 472 482 470 491 0.78 Ubiquitin-Binding Zinc Finger # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF57-203.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF57-203.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF57-203.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF57-203.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF57-203.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:09:34 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF57-204.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF57-204.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF57-204.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF57-204.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF57-204.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:09:34 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZNF57-205 - 557 2.8e-92 299.4 126.8 1 15 5.1e-06 0.0032 17.8 1.0 2 26 129 153 128 153 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF57-205 - 557 2.8e-92 299.4 126.8 2 15 0.38 2.4e+02 2.4 0.1 1 9 156 164 156 179 0.81 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF57-205 - 557 2.8e-92 299.4 126.8 3 15 0.00036 0.23 12.0 1.3 10 24 193 207 183 209 0.81 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF57-205 - 557 2.8e-92 299.4 126.8 4 15 1.1e-06 0.0007 19.9 2.7 2 25 213 236 212 236 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF57-205 - 557 2.8e-92 299.4 126.8 5 15 4.8e-09 3.1e-06 27.4 1.4 2 24 241 263 240 265 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF57-205 - 557 2.8e-92 299.4 126.8 6 15 1.5e-10 9.4e-08 32.2 4.3 2 25 269 292 268 293 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF57-205 - 557 2.8e-92 299.4 126.8 7 15 8.8e-12 5.7e-09 36.0 2.2 1 25 296 320 296 320 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF57-205 - 557 2.8e-92 299.4 126.8 8 15 1.3e-10 8.6e-08 32.3 1.0 2 26 325 349 324 349 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF57-205 - 557 2.8e-92 299.4 126.8 9 15 3.2e-11 2e-08 34.3 1.1 3 25 354 376 352 376 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF57-205 - 557 2.8e-92 299.4 126.8 10 15 9.7e-09 6.2e-06 26.4 0.5 2 26 381 405 380 405 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF57-205 - 557 2.8e-92 299.4 126.8 11 15 3.2e-11 2.1e-08 34.2 1.8 2 25 409 432 408 432 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF57-205 - 557 2.8e-92 299.4 126.8 12 15 1.2e-07 7.9e-05 22.9 2.9 2 26 437 461 436 461 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF57-205 - 557 2.8e-92 299.4 126.8 13 15 3.7e-11 2.4e-08 34.0 1.0 3 25 466 488 464 488 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF57-205 - 557 2.8e-92 299.4 126.8 14 15 3.4e-08 2.2e-05 24.7 4.2 4 25 495 516 493 516 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF57-205 - 557 2.8e-92 299.4 126.8 15 15 5.1e-07 0.00033 20.9 1.9 2 25 521 544 520 545 0.93 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZNF57-205 - 557 5.5e-51 168.3 129.7 1 14 3.7e-06 0.0024 18.2 4.3 1 23 142 164 142 164 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF57-205 - 557 5.5e-51 168.3 129.7 2 14 2 1.3e+03 0.2 0.4 5 22 174 191 171 191 0.81 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF57-205 - 557 5.5e-51 168.3 129.7 3 14 0.00012 0.075 13.5 4.8 1 23 198 220 198 220 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF57-205 - 557 5.5e-51 168.3 129.7 4 14 3.7e-05 0.024 15.1 1.3 1 23 226 248 226 248 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF57-205 - 557 5.5e-51 168.3 129.7 5 14 3.1e-08 2e-05 24.8 1.2 1 23 254 276 254 276 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF57-205 - 557 5.5e-51 168.3 129.7 6 14 3.8e-07 0.00024 21.4 2.9 1 23 282 304 282 304 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF57-205 - 557 5.5e-51 168.3 129.7 7 14 1.6e-07 0.0001 22.6 0.6 1 23 310 332 310 332 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF57-205 - 557 5.5e-51 168.3 129.7 8 14 2.3e-07 0.00015 22.0 3.1 1 23 338 360 338 360 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF57-205 - 557 5.5e-51 168.3 129.7 9 14 9.6e-06 0.0062 16.9 0.5 1 23 366 388 366 388 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF57-205 - 557 5.5e-51 168.3 129.7 10 14 2.2e-07 0.00014 22.1 1.6 1 23 394 416 394 416 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF57-205 - 557 5.5e-51 168.3 129.7 11 14 6.5e-06 0.0042 17.5 1.0 1 23 422 444 422 444 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF57-205 - 557 5.5e-51 168.3 129.7 12 14 3.4e-06 0.0022 18.4 3.6 1 23 450 472 450 472 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF57-205 - 557 5.5e-51 168.3 129.7 13 14 7.1e-06 0.0045 17.4 2.7 1 23 478 500 478 500 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF57-205 - 557 5.5e-51 168.3 129.7 14 14 0.00018 0.11 13.0 6.7 1 23 506 528 506 528 0.98 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZNF57-205 - 557 4e-44 145.5 125.3 1 13 6.7e-05 0.043 14.7 3.6 1 23 142 164 142 164 0.97 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF57-205 - 557 4e-44 145.5 125.3 2 13 8.2e-05 0.052 14.4 3.8 1 23 198 220 198 221 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF57-205 - 557 4e-44 145.5 125.3 3 13 5.9e-05 0.038 14.8 1.0 1 23 226 248 226 249 0.97 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF57-205 - 557 4e-44 145.5 125.3 4 13 5e-06 0.0032 18.2 0.8 1 23 254 276 254 277 0.97 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF57-205 - 557 4e-44 145.5 125.3 5 13 6.7e-07 0.00043 20.9 2.4 1 23 282 304 282 305 0.97 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF57-205 - 557 4e-44 145.5 125.3 6 13 1.9e-06 0.0012 19.5 0.7 1 23 310 332 310 333 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF57-205 - 557 4e-44 145.5 125.3 7 13 2.8e-07 0.00018 22.1 2.4 1 23 338 360 338 361 0.97 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF57-205 - 557 4e-44 145.5 125.3 8 13 0.00011 0.069 14.0 0.7 1 23 366 388 366 389 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF57-205 - 557 4e-44 145.5 125.3 9 13 2e-07 0.00013 22.5 1.2 1 23 394 416 394 417 0.97 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF57-205 - 557 4e-44 145.5 125.3 10 13 3.5e-05 0.022 15.5 1.0 1 23 422 444 422 445 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF57-205 - 557 4e-44 145.5 125.3 11 13 2.3e-06 0.0014 19.2 3.0 1 23 450 472 450 473 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF57-205 - 557 4e-44 145.5 125.3 12 13 1.1e-05 0.007 17.1 2.1 1 23 478 500 478 501 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF57-205 - 557 4e-44 145.5 125.3 13 13 0.002 1.3 10.1 5.5 1 23 506 528 506 529 0.86 C2H2-type zinc finger zf-C2H2_jaz PF12171.8 27 ZNF57-205 - 557 6.8e-26 90.0 66.2 1 13 0.1 67 3.9 0.7 2 24 142 164 141 164 0.91 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF57-205 - 557 6.8e-26 90.0 66.2 2 13 0.37 2.4e+02 2.2 1.0 2 23 198 219 197 220 0.85 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF57-205 - 557 6.8e-26 90.0 66.2 3 13 0.087 55 4.2 0.5 2 24 226 248 225 250 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF57-205 - 557 6.8e-26 90.0 66.2 4 13 0.00036 0.23 11.8 0.1 2 24 254 276 253 276 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF57-205 - 557 6.8e-26 90.0 66.2 5 13 5e-05 0.032 14.5 1.1 2 24 282 304 281 304 0.95 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF57-205 - 557 6.8e-26 90.0 66.2 6 13 0.0014 0.89 9.9 0.0 2 22 310 330 309 330 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF57-205 - 557 6.8e-26 90.0 66.2 7 13 1.6e-06 0.001 19.3 0.7 2 24 338 360 337 360 0.95 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF57-205 - 557 6.8e-26 90.0 66.2 8 13 0.021 13 6.2 0.1 2 22 366 386 365 386 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF57-205 - 557 6.8e-26 90.0 66.2 9 13 3.7e-05 0.023 15.0 0.2 2 24 394 416 393 416 0.95 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF57-205 - 557 6.8e-26 90.0 66.2 10 13 0.003 1.9 8.9 0.1 2 22 422 442 421 442 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF57-205 - 557 6.8e-26 90.0 66.2 11 13 5.6e-06 0.0036 17.5 0.2 2 22 450 470 449 470 0.95 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF57-205 - 557 6.8e-26 90.0 66.2 12 13 0.0026 1.7 9.0 0.2 2 22 478 498 477 498 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF57-205 - 557 6.8e-26 90.0 66.2 13 13 0.0026 1.7 9.1 0.8 2 22 506 526 505 526 0.94 Zinc-finger double-stranded RNA-binding KRAB PF01352.27 42 ZNF57-205 - 557 2.9e-24 84.4 0.7 1 1 9e-27 5.8e-24 83.5 0.7 1 42 3 44 3 44 0.98 KRAB box zf-C2H2_11 PF16622.5 29 ZNF57-205 - 557 4.8e-20 71.0 73.3 1 13 0.00084 0.54 10.1 0.4 6 24 143 161 140 162 0.93 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF57-205 - 557 4.8e-20 71.0 73.3 2 13 0.12 75 3.2 0.3 5 23 198 216 194 218 0.80 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF57-205 - 557 4.8e-20 71.0 73.3 3 13 0.016 10 6.0 0.3 3 25 224 246 223 248 0.90 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF57-205 - 557 4.8e-20 71.0 73.3 4 13 0.0019 1.2 8.9 0.1 5 24 254 273 253 275 0.91 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF57-205 - 557 4.8e-20 71.0 73.3 5 13 0.00071 0.46 10.3 0.1 5 23 282 300 279 302 0.92 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF57-205 - 557 4.8e-20 71.0 73.3 6 13 0.00071 0.45 10.3 0.1 6 26 311 331 308 332 0.94 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF57-205 - 557 4.8e-20 71.0 73.3 7 13 0.00037 0.24 11.2 2.5 5 25 338 358 337 360 0.92 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF57-205 - 557 4.8e-20 71.0 73.3 8 13 0.013 8.6 6.2 0.1 6 26 367 387 364 388 0.90 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF57-205 - 557 4.8e-20 71.0 73.3 9 13 0.00017 0.11 12.3 2.1 5 25 394 414 392 416 0.93 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF57-205 - 557 4.8e-20 71.0 73.3 10 13 0.013 8.4 6.2 0.1 6 26 423 443 420 444 0.90 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF57-205 - 557 4.8e-20 71.0 73.3 11 13 0.00019 0.12 12.1 1.9 5 26 450 471 447 472 0.93 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF57-205 - 557 4.8e-20 71.0 73.3 12 13 0.0027 1.8 8.4 0.2 6 26 479 499 476 500 0.92 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF57-205 - 557 4.8e-20 71.0 73.3 13 13 0.0025 1.6 8.5 1.7 5 26 506 527 503 528 0.94 zinc-finger C2H2-type Zn-ribbon_8 PF09723.10 40 ZNF57-205 - 557 4.3e-19 68.3 67.7 1 11 0.0011 0.72 10.0 0.4 6 29 142 165 141 169 0.84 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF57-205 - 557 4.3e-19 68.3 67.7 2 11 0.00064 0.41 10.8 4.6 6 33 198 232 197 235 0.90 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF57-205 - 557 4.3e-19 68.3 67.7 3 11 0.032 20 5.4 6.1 6 34 226 261 225 263 0.75 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF57-205 - 557 4.3e-19 68.3 67.7 4 11 0.0035 2.2 8.4 5.5 6 34 254 289 253 289 0.77 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF57-205 - 557 4.3e-19 68.3 67.7 5 11 0.00038 0.24 11.5 6.2 6 34 282 317 281 320 0.75 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF57-205 - 557 4.3e-19 68.3 67.7 6 11 1.5e-05 0.0095 16.0 3.2 6 35 310 346 308 353 0.82 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF57-205 - 557 4.3e-19 68.3 67.7 7 11 0.00035 0.23 11.6 4.9 6 34 338 373 336 376 0.79 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF57-205 - 557 4.3e-19 68.3 67.7 8 11 9e-05 0.058 13.5 5.0 6 35 366 402 365 409 0.85 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF57-205 - 557 4.3e-19 68.3 67.7 9 11 0.0022 1.4 9.1 0.4 6 20 394 408 393 414 0.85 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF57-205 - 557 4.3e-19 68.3 67.7 10 11 1.7e-06 0.0011 19.1 1.8 6 35 422 458 421 465 0.85 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF57-205 - 557 4.3e-19 68.3 67.7 11 11 4.4e-06 0.0028 17.7 1.7 6 33 478 512 477 516 0.89 Zinc ribbon domain zf-trcl PF13451.6 48 ZNF57-205 - 557 4.8e-15 55.2 59.3 1 11 0.45 2.9e+02 1.5 0.1 3 13 140 150 134 156 0.66 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF57-205 - 557 4.8e-15 55.2 59.3 2 11 0.18 1.2e+02 2.7 4.6 2 41 195 233 194 236 0.66 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF57-205 - 557 4.8e-15 55.2 59.3 3 11 0.00027 0.17 11.8 0.1 1 22 250 271 250 277 0.86 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF57-205 - 557 4.8e-15 55.2 59.3 4 11 0.0035 2.2 8.2 0.2 3 21 280 298 278 303 0.85 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF57-205 - 557 4.8e-15 55.2 59.3 5 11 0.0018 1.1 9.2 0.2 3 18 308 323 306 324 0.89 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF57-205 - 557 4.8e-15 55.2 59.3 6 11 0.014 8.9 6.3 0.1 2 15 335 348 334 356 0.88 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF57-205 - 557 4.8e-15 55.2 59.3 7 11 0.00042 0.27 11.2 0.2 3 18 364 379 362 384 0.89 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF57-205 - 557 4.8e-15 55.2 59.3 8 11 0.067 43 4.1 0.1 4 15 393 404 390 407 0.84 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF57-205 - 557 4.8e-15 55.2 59.3 9 11 0.0031 2 8.4 5.4 3 39 420 455 418 463 0.72 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF57-205 - 557 4.8e-15 55.2 59.3 10 11 0.00028 0.18 11.7 0.1 3 18 476 491 474 493 0.90 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF57-205 - 557 4.8e-15 55.2 59.3 11 11 0.015 9.4 6.2 0.2 3 17 504 518 502 521 0.85 Probable zinc-ribbon domain zf-C2H2_6 PF13912.6 27 ZNF57-205 - 557 3.6e-10 39.6 110.4 1 13 0.26 1.6e+02 2.4 5.7 2 24 142 164 142 166 0.97 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF57-205 - 557 3.6e-10 39.6 110.4 2 13 0.09 58 3.8 0.4 2 12 198 208 198 212 0.95 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF57-205 - 557 3.6e-10 39.6 110.4 3 13 1.8 1.1e+03 -0.3 0.5 2 12 226 236 225 250 0.73 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF57-205 - 557 3.6e-10 39.6 110.4 4 13 0.012 7.5 6.7 0.3 2 11 254 263 254 265 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF57-205 - 557 3.6e-10 39.6 110.4 5 13 0.002 1.3 9.1 3.3 2 24 282 304 282 307 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF57-205 - 557 3.6e-10 39.6 110.4 6 13 0.00014 0.09 12.8 0.3 2 21 310 329 310 333 0.75 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF57-205 - 557 3.6e-10 39.6 110.4 7 13 0.0013 0.82 9.7 3.2 2 24 338 360 337 363 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF57-205 - 557 3.6e-10 39.6 110.4 8 13 0.0025 1.6 8.8 0.8 2 11 366 375 366 376 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF57-205 - 557 3.6e-10 39.6 110.4 9 13 3.4e-06 0.0022 18.0 1.6 2 24 394 416 393 419 0.95 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF57-205 - 557 3.6e-10 39.6 110.4 10 13 0.00084 0.54 10.3 1.2 2 11 422 431 422 432 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF57-205 - 557 3.6e-10 39.6 110.4 11 13 0.0053 3.4 7.8 3.3 2 24 450 472 449 475 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF57-205 - 557 3.6e-10 39.6 110.4 12 13 0.00084 0.54 10.3 1.2 2 11 478 487 478 488 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF57-205 - 557 3.6e-10 39.6 110.4 13 13 0.018 11 6.1 1.1 2 12 506 516 506 531 0.84 C2H2-type zinc finger zinc_ribbon_15 PF17032.5 86 ZNF57-205 - 557 6.6e-10 39.6 62.7 1 9 8.8 5.6e+03 -1.8 7.8 34 74 138 206 129 210 0.70 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF57-205 - 557 6.6e-10 39.6 62.7 2 9 0.00092 0.59 10.9 3.0 34 76 194 236 189 242 0.87 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF57-205 - 557 6.6e-10 39.6 62.7 3 9 0.0018 1.1 10.0 2.8 30 74 218 262 215 269 0.90 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF57-205 - 557 6.6e-10 39.6 62.7 4 9 0.0013 0.81 10.5 1.0 29 76 245 292 235 300 0.85 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF57-205 - 557 6.6e-10 39.6 62.7 5 9 0.0017 1.1 10.1 2.7 32 75 276 319 268 324 0.84 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF57-205 - 557 6.6e-10 39.6 62.7 6 9 1.7e-05 0.011 16.5 0.9 29 79 329 379 324 384 0.90 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF57-205 - 557 6.6e-10 39.6 62.7 7 9 1.1e-05 0.0069 17.1 1.5 29 80 385 436 376 440 0.89 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF57-205 - 557 6.6e-10 39.6 62.7 8 9 5.4e-05 0.035 14.9 1.4 29 76 441 488 433 496 0.91 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF57-205 - 557 6.6e-10 39.6 62.7 9 9 0.082 53 4.7 1.4 31 70 499 538 494 548 0.83 zinc-ribbon family Zn_ribbon_SprT PF17283.2 38 ZNF57-205 - 557 3.2e-09 36.6 71.9 1 11 0.00085 0.55 10.2 3.0 5 28 142 166 141 168 0.89 SprT-like zinc ribbon domain Zn_ribbon_SprT PF17283.2 38 ZNF57-205 - 557 3.2e-09 36.6 71.9 2 11 0.041 26 4.8 1.3 24 35 193 208 178 211 0.57 SprT-like zinc ribbon domain Zn_ribbon_SprT PF17283.2 38 ZNF57-205 - 557 3.2e-09 36.6 71.9 3 11 0.02 13 5.8 5.6 5 35 198 236 197 239 0.79 SprT-like zinc ribbon domain Zn_ribbon_SprT PF17283.2 38 ZNF57-205 - 557 3.2e-09 36.6 71.9 4 11 4.1e-06 0.0026 17.6 4.6 5 33 254 290 253 293 0.94 SprT-like zinc ribbon domain Zn_ribbon_SprT PF17283.2 38 ZNF57-205 - 557 3.2e-09 36.6 71.9 5 11 1.6e-05 0.01 15.7 2.9 5 34 282 319 281 323 0.94 SprT-like zinc ribbon domain Zn_ribbon_SprT PF17283.2 38 ZNF57-205 - 557 3.2e-09 36.6 71.9 6 11 0.00091 0.58 10.1 2.3 5 32 338 373 337 377 0.93 SprT-like zinc ribbon domain Zn_ribbon_SprT PF17283.2 38 ZNF57-205 - 557 3.2e-09 36.6 71.9 7 11 0.00024 0.16 11.9 2.1 5 34 394 431 393 435 0.94 SprT-like zinc ribbon domain Zn_ribbon_SprT PF17283.2 38 ZNF57-205 - 557 3.2e-09 36.6 71.9 8 11 0.2 1.3e+02 2.6 3.9 5 34 422 459 422 463 0.85 SprT-like zinc ribbon domain Zn_ribbon_SprT PF17283.2 38 ZNF57-205 - 557 3.2e-09 36.6 71.9 9 11 0.014 8.7 6.4 1.9 5 34 450 487 449 491 0.86 SprT-like zinc ribbon domain Zn_ribbon_SprT PF17283.2 38 ZNF57-205 - 557 3.2e-09 36.6 71.9 10 11 0.004 2.5 8.1 1.7 5 31 478 512 477 517 0.81 SprT-like zinc ribbon domain Zn_ribbon_SprT PF17283.2 38 ZNF57-205 - 557 3.2e-09 36.6 71.9 11 11 0.1 64 3.6 0.5 5 23 506 524 505 528 0.85 SprT-like zinc ribbon domain zf_UBZ PF18439.1 32 ZNF57-205 - 557 1.5e-08 34.0 55.8 1 13 0.7 4.5e+02 0.6 0.1 3 12 142 151 140 157 0.84 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF57-205 - 557 1.5e-08 34.0 55.8 2 13 0.0041 2.6 7.7 0.6 3 20 198 215 196 216 0.92 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF57-205 - 557 1.5e-08 34.0 55.8 3 13 0.073 46 3.7 0.1 2 11 225 234 224 240 0.85 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF57-205 - 557 1.5e-08 34.0 55.8 4 13 0.044 28 4.4 0.1 3 12 254 263 252 273 0.76 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF57-205 - 557 1.5e-08 34.0 55.8 5 13 0.026 17 5.1 0.3 3 20 282 300 280 301 0.78 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF57-205 - 557 1.5e-08 34.0 55.8 6 13 0.012 7.5 6.2 0.1 3 13 310 320 308 325 0.85 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF57-205 - 557 1.5e-08 34.0 55.8 7 13 0.0048 3.1 7.5 0.1 3 20 338 356 336 357 0.85 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF57-205 - 557 1.5e-08 34.0 55.8 8 13 0.021 14 5.4 0.2 3 20 366 384 364 384 0.79 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF57-205 - 557 1.5e-08 34.0 55.8 9 13 0.0044 2.8 7.6 0.1 2 15 393 406 392 413 0.80 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF57-205 - 557 1.5e-08 34.0 55.8 10 13 0.0097 6.2 6.5 0.2 3 20 422 440 420 440 0.81 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF57-205 - 557 1.5e-08 34.0 55.8 11 13 0.02 13 5.5 0.2 3 20 450 468 448 469 0.84 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF57-205 - 557 1.5e-08 34.0 55.8 12 13 0.027 17 5.1 0.1 3 12 478 487 476 495 0.87 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF57-205 - 557 1.5e-08 34.0 55.8 13 13 0.17 1.1e+02 2.5 0.2 3 13 506 516 504 525 0.78 Ubiquitin-Binding Zinc Finger # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF57-205.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF57-205.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF57-205.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF57-205.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF57-205.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:09:35 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZNF572-201 - 529 1.3e-91 297.2 105.9 1 14 0.0011 1.3 9.6 0.4 11 26 128 143 113 143 0.76 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF572-201 - 529 1.3e-91 297.2 105.9 2 14 4.3e-09 4.9e-06 26.7 5.9 1 24 146 169 146 169 0.97 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF572-201 - 529 1.3e-91 297.2 105.9 3 14 1.2e-11 1.4e-08 34.8 0.5 1 26 174 199 174 199 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF572-201 - 529 1.3e-91 297.2 105.9 4 14 1.7e-11 1.9e-08 34.4 1.9 4 26 205 227 202 227 0.90 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF572-201 - 529 1.3e-91 297.2 105.9 5 14 1.8e-10 2e-07 31.1 3.4 1 26 230 255 230 255 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF572-201 - 529 1.3e-91 297.2 105.9 6 14 5.6e-12 6.2e-09 35.9 0.7 4 25 261 282 259 283 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF572-201 - 529 1.3e-91 297.2 105.9 7 14 6.7e-11 7.6e-08 32.5 2.1 2 25 287 310 286 311 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF572-201 - 529 1.3e-91 297.2 105.9 8 14 1.7e-12 1.9e-09 37.5 0.6 2 25 315 338 314 339 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF572-201 - 529 1.3e-91 297.2 105.9 9 14 0.00057 0.64 10.6 0.0 1 17 342 358 342 369 0.87 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF572-201 - 529 1.3e-91 297.2 105.9 10 14 0.00067 0.76 10.3 2.0 7 24 376 393 375 394 0.89 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF572-201 - 529 1.3e-91 297.2 105.9 11 14 1.7e-10 1.9e-07 31.2 1.6 1 25 398 422 398 423 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF572-201 - 529 1.3e-91 297.2 105.9 12 14 5.1e-11 5.7e-08 32.8 0.3 2 25 427 450 426 451 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF572-201 - 529 1.3e-91 297.2 105.9 13 14 7.2e-10 8.1e-07 29.2 3.2 1 25 454 478 454 479 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF572-201 - 529 1.3e-91 297.2 105.9 14 14 0.11 1.2e+02 3.3 0.1 2 18 483 498 482 500 0.85 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZNF572-201 - 529 5.8e-71 231.2 117.4 1 12 3.9e-09 4.4e-06 26.8 4.7 1 23 132 154 132 154 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF572-201 - 529 5.8e-71 231.2 117.4 2 12 1.9e-06 0.0022 18.4 7.7 1 23 160 182 160 182 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF572-201 - 529 5.8e-71 231.2 117.4 3 12 1.6e-09 1.8e-06 28.1 1.0 1 23 188 210 188 210 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF572-201 - 529 5.8e-71 231.2 117.4 4 12 8.7e-09 9.7e-06 25.8 5.0 1 23 216 238 216 238 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF572-201 - 529 5.8e-71 231.2 117.4 5 12 1.4e-07 0.00016 21.9 0.9 1 23 244 266 244 266 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF572-201 - 529 5.8e-71 231.2 117.4 6 12 1e-11 1.1e-08 35.0 1.3 1 23 272 294 272 294 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF572-201 - 529 5.8e-71 231.2 117.4 7 12 2.3e-05 0.026 15.0 2.1 1 23 300 322 300 322 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF572-201 - 529 5.8e-71 231.2 117.4 8 12 3.5e-10 3.9e-07 30.1 0.9 1 23 328 350 328 350 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF572-201 - 529 5.8e-71 231.2 117.4 9 12 1.3e-07 0.00015 22.0 4.8 1 23 384 406 384 406 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF572-201 - 529 5.8e-71 231.2 117.4 10 12 8.9e-09 9.9e-06 25.7 1.2 1 23 412 434 412 434 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF572-201 - 529 5.8e-71 231.2 117.4 11 12 1.8e-10 2e-07 31.1 1.1 1 23 440 462 440 462 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF572-201 - 529 5.8e-71 231.2 117.4 12 12 9.2e-06 0.01 16.2 4.8 1 23 468 490 468 490 0.98 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZNF572-201 - 529 1.6e-41 137.3 109.8 1 12 0.0001 0.11 13.4 4.3 1 23 132 154 132 155 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF572-201 - 529 1.6e-41 137.3 109.8 2 12 0.00021 0.24 12.3 7.1 1 23 160 182 160 183 0.97 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF572-201 - 529 1.6e-41 137.3 109.8 3 12 2.5e-06 0.0028 18.4 0.7 1 23 188 210 188 211 0.97 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF572-201 - 529 1.6e-41 137.3 109.8 4 12 4e-07 0.00045 20.8 4.1 1 23 216 238 216 239 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF572-201 - 529 1.6e-41 137.3 109.8 5 12 4e-05 0.045 14.6 1.0 1 23 244 266 244 267 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF572-201 - 529 1.6e-41 137.3 109.8 6 12 3.8e-08 4.2e-05 24.0 1.0 1 23 272 294 272 295 0.97 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF572-201 - 529 1.6e-41 137.3 109.8 7 12 5.5e-05 0.062 14.2 1.9 1 23 300 322 300 323 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF572-201 - 529 1.6e-41 137.3 109.8 8 12 1.9e-07 0.00021 21.8 0.6 1 23 328 350 328 351 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF572-201 - 529 1.6e-41 137.3 109.8 9 12 2.7e-05 0.03 15.1 3.9 1 23 384 406 384 407 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF572-201 - 529 1.6e-41 137.3 109.8 10 12 0.0012 1.4 10.0 1.3 1 23 412 434 412 435 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF572-201 - 529 1.6e-41 137.3 109.8 11 12 2.2e-07 0.00025 21.6 0.5 1 23 440 462 440 463 0.97 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF572-201 - 529 1.6e-41 137.3 109.8 12 12 8.4e-05 0.094 13.6 3.8 1 23 468 490 468 491 0.93 C2H2-type zinc finger Zn-ribbon_8 PF09723.10 40 ZNF572-201 - 529 9.2e-13 48.1 59.0 1 7 0.065 73 3.6 5.0 6 33 132 166 131 170 0.86 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF572-201 - 529 9.2e-13 48.1 59.0 2 7 4.6e-06 0.0052 16.9 2.8 6 35 188 224 187 228 0.84 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF572-201 - 529 9.2e-13 48.1 59.0 3 7 6.2e-06 0.007 16.5 1.9 6 35 244 280 243 285 0.91 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF572-201 - 529 9.2e-13 48.1 59.0 4 7 6.4e-06 0.0071 16.4 4.0 6 38 300 339 299 340 0.93 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF572-201 - 529 9.2e-13 48.1 59.0 5 7 0.016 18 5.5 0.4 6 15 384 393 382 407 0.87 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF572-201 - 529 9.2e-13 48.1 59.0 6 7 5.7e-06 0.0064 16.6 1.5 6 35 412 448 411 453 0.86 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF572-201 - 529 9.2e-13 48.1 59.0 7 7 0.044 49 4.1 0.5 6 17 468 479 467 494 0.81 Zinc ribbon domain zf-C2H2_6 PF13912.6 27 ZNF572-201 - 529 1.1e-12 47.6 106.2 1 11 0.00061 0.69 10.0 4.5 2 25 132 155 132 157 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF572-201 - 529 1.1e-12 47.6 106.2 2 11 0.0043 4.8 7.3 0.8 2 24 188 210 188 213 0.77 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF572-201 - 529 1.1e-12 47.6 106.2 3 11 2e-05 0.022 14.7 4.2 2 24 216 238 216 241 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF572-201 - 529 1.1e-12 47.6 106.2 4 11 5.9e-07 0.00066 19.6 1.5 2 24 244 266 244 269 0.96 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF572-201 - 529 1.1e-12 47.6 106.2 5 11 0.00011 0.12 12.4 0.8 2 24 272 294 272 297 0.95 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF572-201 - 529 1.1e-12 47.6 106.2 6 11 0.042 47 4.1 1.6 2 12 300 310 300 322 0.88 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF572-201 - 529 1.1e-12 47.6 106.2 7 11 1.6e-05 0.018 15.0 0.5 2 24 328 350 328 353 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF572-201 - 529 1.1e-12 47.6 106.2 8 11 0.015 16 5.6 3.0 2 24 384 406 384 409 0.75 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF572-201 - 529 1.1e-12 47.6 106.2 9 11 0.0048 5.4 7.1 0.3 2 12 412 422 412 434 0.91 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF572-201 - 529 1.1e-12 47.6 106.2 10 11 0.0002 0.23 11.5 0.2 2 24 440 462 440 464 0.98 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF572-201 - 529 1.1e-12 47.6 106.2 11 11 0.22 2.5e+02 1.8 3.4 2 13 468 479 468 493 0.77 C2H2-type zinc finger zf-C2H2_jaz PF12171.8 27 ZNF572-201 - 529 2.6e-11 43.5 72.7 1 12 0.0003 0.34 11.3 2.1 2 24 132 154 131 155 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF572-201 - 529 2.6e-11 43.5 72.7 2 12 0.59 6.6e+02 0.8 4.3 2 22 160 180 159 180 0.91 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF572-201 - 529 2.6e-11 43.5 72.7 3 12 0.011 12 6.3 0.2 4 24 190 210 187 210 0.90 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF572-201 - 529 2.6e-11 43.5 72.7 4 12 0.00012 0.13 12.6 0.8 2 23 216 237 215 238 0.91 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF572-201 - 529 2.6e-11 43.5 72.7 5 12 4.4e-05 0.05 13.9 0.2 2 24 244 266 243 266 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF572-201 - 529 2.6e-11 43.5 72.7 6 12 0.0009 1 9.7 0.1 2 24 272 294 271 294 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF572-201 - 529 2.6e-11 43.5 72.7 7 12 0.0093 10 6.5 0.7 2 21 300 319 299 320 0.87 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF572-201 - 529 2.6e-11 43.5 72.7 8 12 0.0003 0.33 11.3 0.1 4 22 330 348 327 348 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF572-201 - 529 2.6e-11 43.5 72.7 9 12 0.053 59 4.1 0.5 2 23 384 405 383 406 0.86 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF572-201 - 529 2.6e-11 43.5 72.7 10 12 0.012 13 6.2 0.2 2 24 412 434 411 434 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF572-201 - 529 2.6e-11 43.5 72.7 11 12 0.54 6e+02 0.9 0.1 2 24 440 462 439 463 0.88 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF572-201 - 529 2.6e-11 43.5 72.7 12 12 0.072 81 3.7 1.5 2 22 468 488 467 488 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_11 PF16622.5 29 ZNF572-201 - 529 1.9e-07 30.7 74.7 1 12 0.4 4.5e+02 0.7 0.9 5 23 132 150 131 153 0.87 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF572-201 - 529 1.9e-07 30.7 74.7 2 12 0.038 43 4.0 4.7 5 26 160 181 157 182 0.93 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF572-201 - 529 1.9e-07 30.7 74.7 3 12 0.011 13 5.7 0.1 5 15 188 198 185 206 0.84 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF572-201 - 529 1.9e-07 30.7 74.7 4 12 0.00057 0.64 9.8 0.8 5 23 216 234 213 236 0.88 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF572-201 - 529 1.9e-07 30.7 74.7 5 12 0.84 9.4e+02 -0.3 0.2 7 20 246 259 243 264 0.77 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF572-201 - 529 1.9e-07 30.7 74.7 6 12 0.00014 0.15 11.8 0.3 5 24 272 291 269 293 0.92 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF572-201 - 529 1.9e-07 30.7 74.7 7 12 0.017 19 5.1 0.5 5 26 300 321 297 322 0.92 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF572-201 - 529 1.9e-07 30.7 74.7 8 12 0.0018 2 8.3 0.1 5 20 328 343 325 349 0.80 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF572-201 - 529 1.9e-07 30.7 74.7 9 12 0.0056 6.3 6.7 2.4 5 24 384 403 381 405 0.89 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF572-201 - 529 1.9e-07 30.7 74.7 10 12 0.95 1.1e+03 -0.5 0.2 5 17 412 424 410 432 0.77 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF572-201 - 529 1.9e-07 30.7 74.7 11 12 0.00045 0.5 10.2 0.1 5 25 440 460 437 462 0.93 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF572-201 - 529 1.9e-07 30.7 74.7 12 12 0.00011 0.12 12.2 1.9 5 26 468 489 465 490 0.94 zinc-finger C2H2-type zf_UBZ PF18439.1 32 ZNF572-201 - 529 1e-06 28.2 63.6 1 12 0.019 22 4.8 0.3 3 20 132 150 130 151 0.81 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF572-201 - 529 1e-06 28.2 63.6 2 12 0.38 4.3e+02 0.6 2.4 3 12 160 169 158 179 0.82 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF572-201 - 529 1e-06 28.2 63.6 3 12 0.0045 5 6.8 0.1 3 15 188 200 186 203 0.85 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF572-201 - 529 1e-06 28.2 63.6 4 12 0.00018 0.2 11.3 0.6 3 17 216 231 214 235 0.80 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF572-201 - 529 1e-06 28.2 63.6 5 12 0.014 16 5.2 0.1 3 21 244 263 242 263 0.90 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF572-201 - 529 1e-06 28.2 63.6 6 12 0.00026 0.3 10.7 0.1 3 17 272 287 270 291 0.80 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF572-201 - 529 1e-06 28.2 63.6 7 12 0.22 2.4e+02 1.4 0.7 3 12 300 309 298 319 0.81 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF572-201 - 529 1e-06 28.2 63.6 8 12 0.00022 0.24 11.0 0.1 3 21 328 347 326 347 0.84 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF572-201 - 529 1e-06 28.2 63.6 9 12 0.12 1.3e+02 2.3 0.4 3 12 384 393 382 402 0.86 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF572-201 - 529 1e-06 28.2 63.6 10 12 0.036 40 3.9 0.1 3 15 412 424 410 431 0.85 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF572-201 - 529 1e-06 28.2 63.6 11 12 0.0014 1.6 8.4 0.1 3 15 440 452 438 459 0.83 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF572-201 - 529 1e-06 28.2 63.6 12 12 0.2 2.3e+02 1.5 0.8 3 15 468 480 466 487 0.79 Ubiquitin-Binding Zinc Finger # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF572-201.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF572-201.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF572-201.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF572-201.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF572-201.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:09:36 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZNF573-201 - 607 6.4e-133 427.8 158.8 1 20 0.0016 1.3 9.6 2.9 12 26 73 87 71 87 0.89 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF573-201 - 607 6.4e-133 427.8 158.8 2 20 3.8e-06 0.0031 17.9 1.1 5 25 94 114 90 115 0.89 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF573-201 - 607 6.4e-133 427.8 158.8 3 20 7.6e-11 6.2e-08 32.7 1.0 2 25 119 142 118 143 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF573-201 - 607 6.4e-133 427.8 158.8 4 20 1.4e-09 1.2e-06 28.7 0.6 2 24 147 169 146 171 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF573-201 - 607 6.4e-133 427.8 158.8 5 20 6.4e-09 5.2e-06 26.6 0.3 3 25 176 198 174 199 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF573-201 - 607 6.4e-133 427.8 158.8 6 20 1.4e-11 1.2e-08 35.0 2.9 1 25 202 226 202 227 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF573-201 - 607 6.4e-133 427.8 158.8 7 20 2.9e-06 0.0024 18.2 0.4 1 25 230 254 230 255 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF573-201 - 607 6.4e-133 427.8 158.8 8 20 8.9e-11 7.3e-08 32.5 1.0 2 26 259 283 258 283 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF573-201 - 607 6.4e-133 427.8 158.8 9 20 3.5e-08 2.9e-05 24.3 2.6 5 25 290 310 287 310 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF573-201 - 607 6.4e-133 427.8 158.8 10 20 1.9e-10 1.6e-07 31.5 0.8 1 26 314 339 314 339 0.97 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF573-201 - 607 6.4e-133 427.8 158.8 11 20 9.7e-11 7.9e-08 32.4 2.3 2 25 343 366 342 366 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF573-201 - 607 6.4e-133 427.8 158.8 12 20 7.7e-08 6.3e-05 23.2 5.3 2 25 371 394 370 394 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF573-201 - 607 6.4e-133 427.8 158.8 13 20 7.2e-10 5.8e-07 29.6 0.4 1 26 398 423 398 423 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF573-201 - 607 6.4e-133 427.8 158.8 14 20 3.6e-11 2.9e-08 33.7 1.9 1 25 426 450 426 450 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF573-201 - 607 6.4e-133 427.8 158.8 15 20 9.2e-11 7.5e-08 32.5 1.7 2 25 455 478 454 478 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF573-201 - 607 6.4e-133 427.8 158.8 16 20 2e-09 1.6e-06 28.2 0.8 1 25 482 506 482 507 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF573-201 - 607 6.4e-133 427.8 158.8 17 20 6.8e-08 5.6e-05 23.4 1.8 1 25 510 534 510 534 0.97 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF573-201 - 607 6.4e-133 427.8 158.8 18 20 1.3e-10 1e-07 32.0 0.8 2 25 539 562 538 563 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF573-201 - 607 6.4e-133 427.8 158.8 19 20 1.7e-11 1.4e-08 34.8 0.6 1 25 566 590 566 591 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF573-201 - 607 6.4e-133 427.8 158.8 20 20 0.55 4.5e+02 1.5 0.2 1 11 594 604 594 606 0.86 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZNF573-201 - 607 1.9e-94 305.1 147.8 1 19 8.5e-05 0.069 13.6 4.3 1 23 76 98 76 98 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF573-201 - 607 1.9e-94 305.1 147.8 2 19 7.8e-07 0.00063 20.1 1.4 1 23 104 126 104 126 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF573-201 - 607 1.9e-94 305.1 147.8 3 19 2.8e-07 0.00023 21.5 1.0 1 23 132 154 132 154 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF573-201 - 607 1.9e-94 305.1 147.8 4 19 4.9e-06 0.004 17.5 0.4 1 23 160 182 160 182 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF573-201 - 607 1.9e-94 305.1 147.8 5 19 1.5e-07 0.00012 22.3 0.3 1 23 188 210 188 210 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF573-201 - 607 1.9e-94 305.1 147.8 6 19 2.5e-08 2e-05 24.7 1.3 1 23 216 238 216 238 0.93 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF573-201 - 607 1.9e-94 305.1 147.8 7 19 1.1e-07 8.6e-05 22.8 1.1 1 23 244 266 244 266 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF573-201 - 607 1.9e-94 305.1 147.8 8 19 6.1e-07 0.00049 20.4 0.5 1 23 272 294 272 294 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF573-201 - 607 1.9e-94 305.1 147.8 9 19 1e-06 0.00082 19.7 2.3 1 23 300 322 300 322 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF573-201 - 607 1.9e-94 305.1 147.8 10 19 1.3e-06 0.001 19.4 2.1 1 23 328 350 328 350 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF573-201 - 607 1.9e-94 305.1 147.8 11 19 1.1e-06 0.0009 19.6 0.5 1 23 356 378 356 378 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF573-201 - 607 1.9e-94 305.1 147.8 12 19 1.5e-06 0.0012 19.2 2.3 1 23 384 406 384 406 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF573-201 - 607 1.9e-94 305.1 147.8 13 19 2.5e-07 0.00021 21.6 0.3 1 23 412 434 412 434 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF573-201 - 607 1.9e-94 305.1 147.8 14 19 1e-06 0.00084 19.7 2.6 1 23 440 462 440 462 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF573-201 - 607 1.9e-94 305.1 147.8 15 19 6.3e-06 0.0051 17.2 2.4 1 23 468 490 468 490 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF573-201 - 607 1.9e-94 305.1 147.8 16 19 2.4e-09 1.9e-06 28.0 2.2 1 23 496 518 496 518 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF573-201 - 607 1.9e-94 305.1 147.8 17 19 3.5e-07 0.00029 21.1 0.6 1 23 524 546 524 546 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF573-201 - 607 1.9e-94 305.1 147.8 18 19 2.8e-09 2.3e-06 27.7 0.1 1 23 552 574 552 574 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF573-201 - 607 1.9e-94 305.1 147.8 19 19 4.8e-08 3.9e-05 23.8 0.5 1 23 580 602 580 602 0.99 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZNF573-201 - 607 2.7e-56 183.3 138.6 1 19 0.00057 0.46 11.4 3.0 1 23 76 98 76 99 0.84 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF573-201 - 607 2.7e-56 183.3 138.6 2 19 6.8e-05 0.056 14.3 1.0 1 23 104 126 104 127 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF573-201 - 607 2.7e-56 183.3 138.6 3 19 1.2e-05 0.0094 16.7 0.8 1 23 132 154 132 155 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF573-201 - 607 2.7e-56 183.3 138.6 4 19 0.00071 0.58 11.1 0.4 1 23 160 182 160 183 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF573-201 - 607 2.7e-56 183.3 138.6 5 19 9.2e-05 0.075 13.9 0.4 1 23 188 210 188 211 0.91 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF573-201 - 607 2.7e-56 183.3 138.6 6 19 0.00014 0.12 13.3 1.0 1 19 216 234 216 238 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF573-201 - 607 2.7e-56 183.3 138.6 7 19 0.00015 0.13 13.2 0.9 1 23 244 266 244 267 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF573-201 - 607 2.7e-56 183.3 138.6 8 19 0.00042 0.35 11.8 0.5 1 23 272 294 272 295 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF573-201 - 607 2.7e-56 183.3 138.6 9 19 9.5e-05 0.078 13.9 1.2 1 23 300 322 300 323 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF573-201 - 607 2.7e-56 183.3 138.6 10 19 2.1e-06 0.0017 19.0 1.5 1 23 328 350 328 351 0.97 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF573-201 - 607 2.7e-56 183.3 138.6 11 19 2.2e-05 0.018 15.9 0.6 1 23 356 378 356 379 0.89 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF573-201 - 607 2.7e-56 183.3 138.6 12 19 0.0001 0.082 13.8 1.4 1 23 384 406 384 407 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF573-201 - 607 2.7e-56 183.3 138.6 13 19 7.9e-06 0.0064 17.2 0.3 1 23 412 434 412 435 0.97 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF573-201 - 607 2.7e-56 183.3 138.6 14 19 1.9e-05 0.015 16.1 1.9 1 23 440 462 440 463 0.87 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF573-201 - 607 2.7e-56 183.3 138.6 15 19 0.0013 1.1 10.3 1.5 1 23 468 490 468 491 0.89 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF573-201 - 607 2.7e-56 183.3 138.6 16 19 1.9e-05 0.016 16.0 1.4 1 23 496 518 496 519 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF573-201 - 607 2.7e-56 183.3 138.6 17 19 7.2e-05 0.058 14.2 0.5 1 23 524 546 524 547 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF573-201 - 607 2.7e-56 183.3 138.6 18 19 1.4e-05 0.011 16.4 0.2 1 23 552 574 552 575 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF573-201 - 607 2.7e-56 183.3 138.6 19 19 8.3e-06 0.0067 17.2 0.5 1 23 580 602 580 603 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF573-201 - 607 8.7e-53 175.5 144.8 1 19 0.00037 0.3 11.1 4.1 2 21 76 95 75 98 0.89 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF573-201 - 607 8.7e-53 175.5 144.8 2 19 3.6e-06 0.0029 17.5 2.0 2 22 104 124 104 128 0.90 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF573-201 - 607 8.7e-53 175.5 144.8 3 19 1.9e-06 0.0015 18.4 1.2 2 23 132 153 132 157 0.90 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF573-201 - 607 8.7e-53 175.5 144.8 4 19 0.015 12 6.0 0.3 2 11 160 169 159 171 0.92 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF573-201 - 607 8.7e-53 175.5 144.8 5 19 0.00099 0.81 9.8 0.6 2 20 188 206 188 211 0.78 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF573-201 - 607 8.7e-53 175.5 144.8 6 19 6.4e-05 0.052 13.6 0.6 2 20 216 234 216 234 0.83 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF573-201 - 607 8.7e-53 175.5 144.8 7 19 0.0045 3.6 7.7 0.8 2 22 244 264 244 268 0.87 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF573-201 - 607 8.7e-53 175.5 144.8 8 19 0.0025 2 8.5 0.3 2 13 272 283 272 284 0.90 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF573-201 - 607 8.7e-53 175.5 144.8 9 19 1.4e-05 0.012 15.6 0.9 2 20 300 318 300 322 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF573-201 - 607 8.7e-53 175.5 144.8 10 19 2.1e-06 0.0017 18.3 2.9 2 24 328 350 327 353 0.95 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF573-201 - 607 8.7e-53 175.5 144.8 11 19 0.00058 0.47 10.5 1.0 2 12 356 366 356 378 0.86 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF573-201 - 607 8.7e-53 175.5 144.8 12 19 9.1e-06 0.0075 16.3 1.7 1 20 383 402 383 406 0.92 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF573-201 - 607 8.7e-53 175.5 144.8 13 19 3.4e-09 2.8e-06 27.2 0.6 2 24 412 434 411 437 0.95 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF573-201 - 607 8.7e-53 175.5 144.8 14 19 0.00042 0.35 10.9 1.1 2 12 440 450 440 451 0.95 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF573-201 - 607 8.7e-53 175.5 144.8 15 19 0.00017 0.14 12.2 0.7 2 21 468 487 468 493 0.86 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF573-201 - 607 8.7e-53 175.5 144.8 16 19 7.1e-05 0.058 13.4 1.0 2 20 496 514 496 520 0.82 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF573-201 - 607 8.7e-53 175.5 144.8 17 19 4e-05 0.033 14.2 1.9 2 22 524 544 524 547 0.87 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF573-201 - 607 8.7e-53 175.5 144.8 18 19 9.4e-05 0.077 13.0 0.3 2 20 552 570 552 576 0.83 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF573-201 - 607 8.7e-53 175.5 144.8 19 19 5.1e-08 4.2e-05 23.4 0.8 2 26 580 604 580 605 0.96 C2H2-type zinc finger zf-C2H2_jaz PF12171.8 27 ZNF573-201 - 607 5.7e-26 90.2 89.1 1 19 0.026 22 5.5 0.8 2 20 76 94 75 94 0.89 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF573-201 - 607 5.7e-26 90.2 89.1 2 19 0.0003 0.25 11.7 0.1 2 22 104 124 103 124 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF573-201 - 607 5.7e-26 90.2 89.1 3 19 0.00041 0.34 11.3 0.0 2 22 132 152 131 152 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF573-201 - 607 5.7e-26 90.2 89.1 4 19 0.76 6.2e+02 0.9 0.4 2 22 160 180 159 180 0.86 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF573-201 - 607 5.7e-26 90.2 89.1 5 19 0.23 1.9e+02 2.5 0.0 2 12 188 198 187 207 0.90 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF573-201 - 607 5.7e-26 90.2 89.1 6 19 0.00024 0.2 12.0 0.1 2 20 216 234 215 234 0.95 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF573-201 - 607 5.7e-26 90.2 89.1 7 19 0.2 1.6e+02 2.7 0.0 2 22 244 264 243 264 0.91 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF573-201 - 607 5.7e-26 90.2 89.1 8 19 0.0023 1.8 8.9 0.0 2 22 272 292 271 292 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF573-201 - 607 5.7e-26 90.2 89.1 9 19 0.0089 7.2 7.0 0.3 2 11 300 309 299 320 0.88 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF573-201 - 607 5.7e-26 90.2 89.1 10 19 0.046 38 4.7 1.3 2 24 328 350 327 350 0.90 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF573-201 - 607 5.7e-26 90.2 89.1 11 19 0.12 98 3.4 0.5 2 12 356 366 355 376 0.86 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF573-201 - 607 5.7e-26 90.2 89.1 12 19 0.0061 5 7.5 0.6 2 11 384 393 383 404 0.89 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF573-201 - 607 5.7e-26 90.2 89.1 13 19 0.00031 0.26 11.6 0.3 2 24 412 434 411 434 0.95 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF573-201 - 607 5.7e-26 90.2 89.1 14 19 0.0062 5.1 7.5 0.7 2 22 440 460 439 460 0.85 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF573-201 - 607 5.7e-26 90.2 89.1 15 19 0.012 9.7 6.6 0.5 2 11 468 477 467 478 0.91 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF573-201 - 607 5.7e-26 90.2 89.1 16 19 5.8e-05 0.047 14.0 0.1 2 21 496 515 495 516 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF573-201 - 607 5.7e-26 90.2 89.1 17 19 0.023 19 5.7 0.5 2 21 524 543 523 544 0.78 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF573-201 - 607 5.7e-26 90.2 89.1 18 19 2.8e-05 0.022 15.0 0.0 2 22 552 572 551 572 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF573-201 - 607 5.7e-26 90.2 89.1 19 19 0.015 12 6.3 0.0 2 22 580 600 579 600 0.90 Zinc-finger double-stranded RNA-binding Zn-ribbon_8 PF09723.10 40 ZNF573-201 - 607 5.3e-23 80.9 106.7 1 17 0.00082 0.67 10.1 5.4 6 37 76 114 75 115 0.80 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF573-201 - 607 5.3e-23 80.9 106.7 2 17 9.7e-05 0.079 13.1 5.9 6 37 104 142 103 143 0.90 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF573-201 - 607 5.3e-23 80.9 106.7 3 17 2.8e-05 0.023 14.8 4.2 6 34 132 167 131 170 0.94 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF573-201 - 607 5.3e-23 80.9 106.7 4 17 5.8e-06 0.0047 17.0 4.4 6 38 188 227 187 229 0.91 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF573-201 - 607 5.3e-23 80.9 106.7 5 17 4.6e-06 0.0038 17.3 3.5 6 38 216 255 215 255 0.83 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF573-201 - 607 5.3e-23 80.9 106.7 6 17 3.9e-05 0.032 14.3 2.5 6 34 244 279 243 284 0.92 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF573-201 - 607 5.3e-23 80.9 106.7 7 17 0.00038 0.31 11.2 4.4 6 35 300 336 299 339 0.84 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF573-201 - 607 5.3e-23 80.9 106.7 8 17 0.00054 0.44 10.7 5.3 6 34 328 363 327 367 0.90 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF573-201 - 607 5.3e-23 80.9 106.7 9 17 0.008 6.5 7.0 0.7 6 16 356 366 355 379 0.83 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF573-201 - 607 5.3e-23 80.9 106.7 10 17 0.0015 1.2 9.3 4.0 6 34 384 419 382 423 0.84 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF573-201 - 607 5.3e-23 80.9 106.7 11 17 0.0042 3.4 7.8 5.7 6 34 412 447 411 450 0.81 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF573-201 - 607 5.3e-23 80.9 106.7 12 17 0.00024 0.19 11.8 3.9 6 34 440 475 439 478 0.90 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF573-201 - 607 5.3e-23 80.9 106.7 13 17 1.4e-05 0.011 15.8 3.6 6 38 468 507 466 509 0.88 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF573-201 - 607 5.3e-23 80.9 106.7 14 17 1.3e-05 0.011 15.9 5.1 6 35 496 532 495 536 0.88 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF573-201 - 607 5.3e-23 80.9 106.7 15 17 8e-06 0.0065 16.6 3.9 6 38 524 563 523 565 0.92 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF573-201 - 607 5.3e-23 80.9 106.7 16 17 0.0001 0.085 13.0 4.9 6 36 552 589 551 591 0.84 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF573-201 - 607 5.3e-23 80.9 106.7 17 17 0.0088 7.2 6.8 0.2 6 16 580 590 579 603 0.83 Zinc ribbon domain zf_UBZ PF18439.1 32 ZNF573-201 - 607 5.4e-14 51.5 83.6 1 19 0.01 8.5 6.1 0.3 3 17 76 91 74 99 0.76 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF573-201 - 607 5.4e-14 51.5 83.6 2 19 0.0074 6 6.6 0.1 3 21 104 123 102 127 0.79 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF573-201 - 607 5.4e-14 51.5 83.6 3 19 0.0072 5.9 6.6 0.1 3 21 132 151 130 155 0.81 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF573-201 - 607 5.4e-14 51.5 83.6 4 19 0.035 29 4.4 0.1 2 12 159 169 158 178 0.88 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF573-201 - 607 5.4e-14 51.5 83.6 5 19 0.036 29 4.4 0.1 3 13 188 198 186 203 0.87 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF573-201 - 607 5.4e-14 51.5 83.6 6 19 0.0011 0.94 9.1 0.1 3 20 216 234 214 238 0.86 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF573-201 - 607 5.4e-14 51.5 83.6 7 19 0.0086 7 6.3 0.1 3 12 244 253 242 263 0.80 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF573-201 - 607 5.4e-14 51.5 83.6 8 19 0.11 89 2.8 0.2 3 10 272 279 270 285 0.86 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF573-201 - 607 5.4e-14 51.5 83.6 9 19 0.026 21 4.8 0.2 3 13 300 310 298 319 0.79 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF573-201 - 607 5.4e-14 51.5 83.6 10 19 0.058 47 3.7 0.1 3 13 328 338 326 347 0.79 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF573-201 - 607 5.4e-14 51.5 83.6 11 19 0.013 11 5.7 0.1 3 14 356 367 354 375 0.80 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF573-201 - 607 5.4e-14 51.5 83.6 12 19 0.021 17 5.1 0.3 2 13 383 394 382 403 0.79 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF573-201 - 607 5.4e-14 51.5 83.6 13 19 0.028 23 4.7 0.1 3 14 412 423 410 431 0.77 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF573-201 - 607 5.4e-14 51.5 83.6 14 19 0.00076 0.62 9.7 0.2 3 21 440 459 438 459 0.87 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF573-201 - 607 5.4e-14 51.5 83.6 15 19 3.7 3e+03 -2.1 0.3 3 12 468 477 467 479 0.87 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF573-201 - 607 5.4e-14 51.5 83.6 16 19 0.014 12 5.6 0.3 3 17 496 511 494 515 0.76 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF573-201 - 607 5.4e-14 51.5 83.6 17 19 0.01 8.1 6.1 0.1 3 20 524 542 522 543 0.77 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF573-201 - 607 5.4e-14 51.5 83.6 18 19 0.0056 4.6 6.9 0.1 3 20 552 570 550 571 0.82 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF573-201 - 607 5.4e-14 51.5 83.6 19 19 0.0089 7.3 6.3 0.1 3 12 580 589 578 599 0.87 Ubiquitin-Binding Zinc Finger XPA_N PF01286.18 32 ZNF573-201 - 607 3.8e-13 49.2 81.2 1 19 0.028 23 5.1 0.5 3 13 77 87 76 91 0.86 XPA protein N-terminal XPA_N PF01286.18 32 ZNF573-201 - 607 3.8e-13 49.2 81.2 2 19 0.0072 5.9 7.0 0.1 3 13 105 115 103 120 0.84 XPA protein N-terminal XPA_N PF01286.18 32 ZNF573-201 - 607 3.8e-13 49.2 81.2 3 19 0.012 9.9 6.3 0.1 3 13 133 143 131 149 0.83 XPA protein N-terminal XPA_N PF01286.18 32 ZNF573-201 - 607 3.8e-13 49.2 81.2 4 19 0.1 84 3.3 0.1 3 11 161 169 160 172 0.90 XPA protein N-terminal XPA_N PF01286.18 32 ZNF573-201 - 607 3.8e-13 49.2 81.2 5 19 0.022 18 5.5 0.1 3 12 189 198 187 200 0.88 XPA protein N-terminal XPA_N PF01286.18 32 ZNF573-201 - 607 3.8e-13 49.2 81.2 6 19 0.0067 5.4 7.1 0.1 3 12 217 226 215 234 0.87 XPA protein N-terminal XPA_N PF01286.18 32 ZNF573-201 - 607 3.8e-13 49.2 81.2 7 19 0.037 30 4.8 0.1 3 11 245 253 243 255 0.88 XPA protein N-terminal XPA_N PF01286.18 32 ZNF573-201 - 607 3.8e-13 49.2 81.2 8 19 0.078 64 3.7 0.1 3 13 273 283 271 289 0.78 XPA protein N-terminal XPA_N PF01286.18 32 ZNF573-201 - 607 3.8e-13 49.2 81.2 9 19 0.034 28 4.9 0.5 3 12 301 310 299 311 0.89 XPA protein N-terminal XPA_N PF01286.18 32 ZNF573-201 - 607 3.8e-13 49.2 81.2 10 19 0.23 1.9e+02 2.2 0.2 3 18 329 345 328 346 0.73 XPA protein N-terminal XPA_N PF01286.18 32 ZNF573-201 - 607 3.8e-13 49.2 81.2 11 19 0.012 9.9 6.3 0.1 3 12 357 366 355 371 0.90 XPA protein N-terminal XPA_N PF01286.18 32 ZNF573-201 - 607 3.8e-13 49.2 81.2 12 19 0.094 77 3.5 1.5 3 12 385 394 384 395 0.90 XPA protein N-terminal XPA_N PF01286.18 32 ZNF573-201 - 607 3.8e-13 49.2 81.2 13 19 0.12 97 3.1 0.2 3 10 413 420 412 424 0.87 XPA protein N-terminal XPA_N PF01286.18 32 ZNF573-201 - 607 3.8e-13 49.2 81.2 14 19 0.0073 5.9 7.0 0.1 3 12 441 450 439 457 0.88 XPA protein N-terminal XPA_N PF01286.18 32 ZNF573-201 - 607 3.8e-13 49.2 81.2 15 19 0.36 3e+02 1.6 0.2 19 27 467 475 465 477 0.74 XPA protein N-terminal XPA_N PF01286.18 32 ZNF573-201 - 607 3.8e-13 49.2 81.2 16 19 0.0033 2.7 8.1 0.1 3 14 497 508 495 513 0.88 XPA protein N-terminal XPA_N PF01286.18 32 ZNF573-201 - 607 3.8e-13 49.2 81.2 17 19 0.0095 7.8 6.6 0.1 3 12 525 534 523 541 0.89 XPA protein N-terminal XPA_N PF01286.18 32 ZNF573-201 - 607 3.8e-13 49.2 81.2 18 19 0.0093 7.6 6.7 0.1 3 12 553 562 551 568 0.89 XPA protein N-terminal XPA_N PF01286.18 32 ZNF573-201 - 607 3.8e-13 49.2 81.2 19 19 0.089 73 3.5 0.0 3 11 581 589 579 591 0.89 XPA protein N-terminal C1_4 PF07975.12 55 ZNF573-201 - 607 1.1e-08 35.2 91.5 1 18 0.006 4.9 7.5 1.0 21 48 71 98 56 100 0.73 TFIIH C1-like domain C1_4 PF07975.12 55 ZNF573-201 - 607 1.1e-08 35.2 91.5 2 18 0.018 15 5.9 5.0 1 48 77 126 77 129 0.79 TFIIH C1-like domain C1_4 PF07975.12 55 ZNF573-201 - 607 1.1e-08 35.2 91.5 3 18 0.0092 7.5 6.9 2.0 1 49 105 155 105 157 0.85 TFIIH C1-like domain C1_4 PF07975.12 55 ZNF573-201 - 607 1.1e-08 35.2 91.5 4 18 9.2e-05 0.075 13.3 2.5 1 49 133 183 133 186 0.92 TFIIH C1-like domain C1_4 PF07975.12 55 ZNF573-201 - 607 1.1e-08 35.2 91.5 5 18 0.071 58 4.0 0.1 26 49 188 211 183 214 0.89 TFIIH C1-like domain C1_4 PF07975.12 55 ZNF573-201 - 607 1.1e-08 35.2 91.5 6 18 0.03 25 5.2 2.1 2 48 218 266 217 269 0.81 TFIIH C1-like domain C1_4 PF07975.12 55 ZNF573-201 - 607 1.1e-08 35.2 91.5 7 18 0.0092 7.5 6.9 1.2 2 48 246 294 245 297 0.81 TFIIH C1-like domain C1_4 PF07975.12 55 ZNF573-201 - 607 1.1e-08 35.2 91.5 8 18 0.008 6.5 7.1 0.6 25 49 299 323 290 325 0.85 TFIIH C1-like domain C1_4 PF07975.12 55 ZNF573-201 - 607 1.1e-08 35.2 91.5 9 18 0.00053 0.43 10.8 3.2 1 49 301 351 301 354 0.86 TFIIH C1-like domain C1_4 PF07975.12 55 ZNF573-201 - 607 1.1e-08 35.2 91.5 10 18 0.0066 5.4 7.3 2.3 1 48 329 378 329 381 0.76 TFIIH C1-like domain C1_4 PF07975.12 55 ZNF573-201 - 607 1.1e-08 35.2 91.5 11 18 0.0039 3.2 8.1 4.5 2 49 358 407 357 409 0.74 TFIIH C1-like domain C1_4 PF07975.12 55 ZNF573-201 - 607 1.1e-08 35.2 91.5 12 18 0.0047 3.9 7.8 2.7 1 45 385 431 385 436 0.76 TFIIH C1-like domain C1_4 PF07975.12 55 ZNF573-201 - 607 1.1e-08 35.2 91.5 13 18 0.0041 3.4 8.0 2.5 2 49 414 463 413 465 0.80 TFIIH C1-like domain C1_4 PF07975.12 55 ZNF573-201 - 607 1.1e-08 35.2 91.5 14 18 0.016 13 6.1 4.5 2 49 442 491 441 493 0.77 TFIIH C1-like domain C1_4 PF07975.12 55 ZNF573-201 - 607 1.1e-08 35.2 91.5 15 18 0.036 29 5.0 3.9 1 48 469 518 469 519 0.83 TFIIH C1-like domain C1_4 PF07975.12 55 ZNF573-201 - 607 1.1e-08 35.2 91.5 16 18 0.01 8.5 6.7 2.9 1 48 497 546 497 549 0.79 TFIIH C1-like domain C1_4 PF07975.12 55 ZNF573-201 - 607 1.1e-08 35.2 91.5 17 18 0.003 2.5 8.4 1.8 2 49 526 575 525 577 0.80 TFIIH C1-like domain C1_4 PF07975.12 55 ZNF573-201 - 607 1.1e-08 35.2 91.5 18 18 0.0099 8.1 6.8 1.2 1 48 553 602 553 605 0.79 TFIIH C1-like domain zinc_ribbon_15 PF17032.5 86 ZNF573-201 - 607 2.9e-08 34.3 80.6 1 13 0.076 62 4.4 6.3 31 79 69 117 45 146 0.79 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF573-201 - 607 2.9e-08 34.3 80.6 2 13 0.0081 6.6 7.6 1.5 34 74 128 168 122 174 0.84 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF573-201 - 607 2.9e-08 34.3 80.6 3 13 0.0096 7.8 7.3 1.0 32 76 154 198 150 203 0.81 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF573-201 - 607 2.9e-08 34.3 80.6 4 13 0.0041 3.3 8.5 1.1 34 77 184 227 171 231 0.82 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF573-201 - 607 2.9e-08 34.3 80.6 5 13 0.00045 0.37 11.6 1.6 32 75 210 253 205 260 0.87 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF573-201 - 607 2.9e-08 34.3 80.6 6 13 0.0037 3 8.7 1.4 33 75 239 281 232 287 0.82 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF573-201 - 607 2.9e-08 34.3 80.6 7 13 0.083 67 4.3 2.1 32 75 266 309 262 314 0.79 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF573-201 - 607 2.9e-08 34.3 80.6 8 13 0.0012 0.99 10.2 1.5 24 76 286 338 279 343 0.83 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF573-201 - 607 2.9e-08 34.3 80.6 9 13 0.015 12 6.7 8.0 30 74 320 364 300 368 0.84 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF573-201 - 607 2.9e-08 34.3 80.6 10 13 0.0076 6.2 7.6 2.8 30 76 376 422 370 430 0.85 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF573-201 - 607 2.9e-08 34.3 80.6 11 13 0.0031 2.5 8.9 1.9 30 75 432 477 426 483 0.85 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF573-201 - 607 2.9e-08 34.3 80.6 12 13 0.0014 1.2 10.0 2.4 32 75 490 533 483 538 0.87 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF573-201 - 607 2.9e-08 34.3 80.6 13 13 0.0022 1.8 9.4 1.3 33 75 547 589 538 594 0.84 zinc-ribbon family zf-C2H2_11 PF16622.5 29 ZNF573-201 - 607 5.5e-08 32.4 86.5 1 19 0.19 1.6e+02 2.2 1.4 7 20 78 91 76 98 0.79 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF573-201 - 607 5.5e-08 32.4 86.5 2 19 0.043 35 4.3 0.2 6 23 105 122 103 125 0.80 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF573-201 - 607 5.5e-08 32.4 86.5 3 19 0.015 12 5.7 0.1 6 23 133 150 130 153 0.81 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF573-201 - 607 5.5e-08 32.4 86.5 4 19 0.025 20 5.0 0.1 3 14 158 169 157 176 0.75 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF573-201 - 607 5.5e-08 32.4 86.5 5 19 0.0017 1.4 8.7 0.4 6 25 189 208 187 210 0.86 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF573-201 - 607 5.5e-08 32.4 86.5 6 19 0.044 36 4.2 0.1 5 15 216 226 213 235 0.83 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF573-201 - 607 5.5e-08 32.4 86.5 7 19 4.2 3.4e+03 -2.1 0.2 7 14 246 253 241 253 0.85 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF573-201 - 607 5.5e-08 32.4 86.5 8 19 0.17 1.4e+02 2.3 0.1 6 16 273 283 271 293 0.87 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF573-201 - 607 5.5e-08 32.4 86.5 9 19 0.0058 4.7 7.1 0.1 6 26 301 321 299 322 0.90 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF573-201 - 607 5.5e-08 32.4 86.5 10 19 0.12 97 2.9 0.6 7 16 330 339 328 347 0.78 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF573-201 - 607 5.5e-08 32.4 86.5 11 19 0.0031 2.6 7.9 0.1 6 26 357 377 354 378 0.91 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF573-201 - 607 5.5e-08 32.4 86.5 12 19 0.0071 5.8 6.8 0.3 7 26 386 405 384 406 0.90 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF573-201 - 607 5.5e-08 32.4 86.5 13 19 0.025 20 5.0 0.1 7 24 414 431 412 433 0.84 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF573-201 - 607 5.5e-08 32.4 86.5 14 19 0.00011 0.086 12.6 0.2 5 26 440 461 437 462 0.92 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF573-201 - 607 5.5e-08 32.4 86.5 15 19 5.4 4.4e+03 -2.4 0.2 9 13 469 473 468 478 0.80 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF573-201 - 607 5.5e-08 32.4 86.5 16 19 0.42 3.4e+02 1.1 0.1 5 14 496 505 492 517 0.76 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF573-201 - 607 5.5e-08 32.4 86.5 17 19 0.13 1.1e+02 2.7 0.0 6 26 525 545 520 546 0.81 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF573-201 - 607 5.5e-08 32.4 86.5 18 19 0.028 23 4.9 0.0 6 26 553 573 551 574 0.88 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF573-201 - 607 5.5e-08 32.4 86.5 19 19 0.26 2.2e+02 1.7 0.5 7 26 582 601 580 602 0.86 zinc-finger C2H2-type DUF3850 PF12961.7 77 ZNF573-201 - 607 2.2e-07 30.8 4.1 1 9 0.023 19 5.4 0.0 2 39 57 94 56 113 0.90 Domain of unknown function (DUF3850) DUF3850 PF12961.7 77 ZNF573-201 - 607 2.2e-07 30.8 4.1 2 9 0.24 2e+02 2.1 0.0 15 59 126 171 118 177 0.73 Domain of unknown function (DUF3850) DUF3850 PF12961.7 77 ZNF573-201 - 607 2.2e-07 30.8 4.1 3 9 0.036 29 4.8 0.0 12 40 179 207 174 226 0.83 Domain of unknown function (DUF3850) DUF3850 PF12961.7 77 ZNF573-201 - 607 2.2e-07 30.8 4.1 4 9 0.56 4.5e+02 1.0 0.0 12 38 263 289 258 310 0.72 Domain of unknown function (DUF3850) DUF3850 PF12961.7 77 ZNF573-201 - 607 2.2e-07 30.8 4.1 5 9 0.094 77 3.4 0.0 12 36 319 343 309 361 0.82 Domain of unknown function (DUF3850) DUF3850 PF12961.7 77 ZNF573-201 - 607 2.2e-07 30.8 4.1 6 9 0.93 7.6e+02 0.2 0.0 10 26 373 389 369 395 0.79 Domain of unknown function (DUF3850) DUF3850 PF12961.7 77 ZNF573-201 - 607 2.2e-07 30.8 4.1 7 9 0.064 52 4.0 0.0 12 37 403 428 392 445 0.82 Domain of unknown function (DUF3850) DUF3850 PF12961.7 77 ZNF573-201 - 607 2.2e-07 30.8 4.1 8 9 5.1 4.1e+03 -2.1 0.0 12 33 487 508 484 529 0.77 Domain of unknown function (DUF3850) DUF3850 PF12961.7 77 ZNF573-201 - 607 2.2e-07 30.8 4.1 9 9 6.9 5.6e+03 -2.5 0.0 13 31 544 562 540 591 0.65 Domain of unknown function (DUF3850) # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF573-201.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF573-201.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF573-201.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF573-201.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF573-201.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:09:36 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZNF573-202 - 577 2.1e-133 429.4 158.8 1 20 0.0016 1.2 9.7 2.9 12 26 43 57 41 57 0.89 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF573-202 - 577 2.1e-133 429.4 158.8 2 20 3.9e-06 0.0029 18.0 1.1 5 25 64 84 60 85 0.89 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF573-202 - 577 2.1e-133 429.4 158.8 3 20 7.8e-11 5.8e-08 32.8 1.0 2 25 89 112 88 113 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF573-202 - 577 2.1e-133 429.4 158.8 4 20 1.5e-09 1.1e-06 28.8 0.6 2 24 117 139 116 141 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF573-202 - 577 2.1e-133 429.4 158.8 5 20 6.6e-09 4.9e-06 26.7 0.3 3 25 146 168 144 169 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF573-202 - 577 2.1e-133 429.4 158.8 6 20 1.5e-11 1.1e-08 35.1 2.9 1 25 172 196 172 197 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF573-202 - 577 2.1e-133 429.4 158.8 7 20 3e-06 0.0022 18.3 0.4 1 25 200 224 200 225 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF573-202 - 577 2.1e-133 429.4 158.8 8 20 9.2e-11 6.8e-08 32.6 1.0 2 26 229 253 228 253 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF573-202 - 577 2.1e-133 429.4 158.8 9 20 3.6e-08 2.7e-05 24.4 2.6 5 25 260 280 257 280 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF573-202 - 577 2.1e-133 429.4 158.8 10 20 2e-10 1.5e-07 31.5 0.8 1 26 284 309 284 309 0.97 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF573-202 - 577 2.1e-133 429.4 158.8 11 20 1e-10 7.5e-08 32.5 2.3 2 25 313 336 312 336 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF573-202 - 577 2.1e-133 429.4 158.8 12 20 7.9e-08 5.9e-05 23.3 5.3 2 25 341 364 340 364 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF573-202 - 577 2.1e-133 429.4 158.8 13 20 7.3e-10 5.5e-07 29.7 0.4 1 26 368 393 368 393 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF573-202 - 577 2.1e-133 429.4 158.8 14 20 3.7e-11 2.8e-08 33.8 1.9 1 25 396 420 396 420 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF573-202 - 577 2.1e-133 429.4 158.8 15 20 9.5e-11 7.1e-08 32.5 1.7 2 25 425 448 424 448 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF573-202 - 577 2.1e-133 429.4 158.8 16 20 2.1e-09 1.5e-06 28.3 0.8 1 25 452 476 452 477 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF573-202 - 577 2.1e-133 429.4 158.8 17 20 7e-08 5.3e-05 23.5 1.8 1 25 480 504 480 504 0.97 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF573-202 - 577 2.1e-133 429.4 158.8 18 20 1.3e-10 9.7e-08 32.1 0.8 2 25 509 532 508 533 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF573-202 - 577 2.1e-133 429.4 158.8 19 20 1.7e-11 1.3e-08 34.9 0.6 1 25 536 560 536 561 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF573-202 - 577 2.1e-133 429.4 158.8 20 20 0.57 4.3e+02 1.6 0.2 1 11 564 574 564 576 0.86 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZNF573-202 - 577 6.8e-95 306.6 147.8 1 19 8.7e-05 0.065 13.7 4.3 1 23 46 68 46 68 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF573-202 - 577 6.8e-95 306.6 147.8 2 19 8e-07 0.0006 20.1 1.4 1 23 74 96 74 96 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF573-202 - 577 6.8e-95 306.6 147.8 3 19 2.9e-07 0.00021 21.5 1.0 1 23 102 124 102 124 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF573-202 - 577 6.8e-95 306.6 147.8 4 19 5e-06 0.0037 17.6 0.4 1 23 130 152 130 152 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF573-202 - 577 6.8e-95 306.6 147.8 5 19 1.5e-07 0.00011 22.4 0.3 1 23 158 180 158 180 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF573-202 - 577 6.8e-95 306.6 147.8 6 19 2.6e-08 1.9e-05 24.8 1.3 1 23 186 208 186 208 0.93 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF573-202 - 577 6.8e-95 306.6 147.8 7 19 1.1e-07 8.1e-05 22.9 1.1 1 23 214 236 214 236 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF573-202 - 577 6.8e-95 306.6 147.8 8 19 6.2e-07 0.00047 20.5 0.5 1 23 242 264 242 264 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF573-202 - 577 6.8e-95 306.6 147.8 9 19 1e-06 0.00077 19.8 2.3 1 23 270 292 270 292 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF573-202 - 577 6.8e-95 306.6 147.8 10 19 1.3e-06 0.00097 19.5 2.1 1 23 298 320 298 320 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF573-202 - 577 6.8e-95 306.6 147.8 11 19 1.1e-06 0.00084 19.7 0.5 1 23 326 348 326 348 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF573-202 - 577 6.8e-95 306.6 147.8 12 19 1.5e-06 0.0011 19.3 2.3 1 23 354 376 354 376 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF573-202 - 577 6.8e-95 306.6 147.8 13 19 2.6e-07 0.00019 21.7 0.3 1 23 382 404 382 404 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF573-202 - 577 6.8e-95 306.6 147.8 14 19 1.1e-06 0.00079 19.7 2.6 1 23 410 432 410 432 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF573-202 - 577 6.8e-95 306.6 147.8 15 19 6.4e-06 0.0048 17.3 2.4 1 23 438 460 438 460 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF573-202 - 577 6.8e-95 306.6 147.8 16 19 2.5e-09 1.8e-06 28.0 2.2 1 23 466 488 466 488 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF573-202 - 577 6.8e-95 306.6 147.8 17 19 3.6e-07 0.00027 21.2 0.6 1 23 494 516 494 516 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF573-202 - 577 6.8e-95 306.6 147.8 18 19 2.9e-09 2.2e-06 27.8 0.1 1 23 522 544 522 544 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF573-202 - 577 6.8e-95 306.6 147.8 19 19 5e-08 3.7e-05 23.9 0.5 1 23 550 572 550 572 0.99 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZNF573-202 - 577 1e-56 184.7 138.6 1 19 0.00059 0.44 11.5 3.0 1 23 46 68 46 69 0.84 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF573-202 - 577 1e-56 184.7 138.6 2 19 7e-05 0.052 14.4 1.0 1 23 74 96 74 97 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF573-202 - 577 1e-56 184.7 138.6 3 19 1.2e-05 0.0089 16.8 0.8 1 23 102 124 102 125 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF573-202 - 577 1e-56 184.7 138.6 4 19 0.00073 0.55 11.2 0.4 1 23 130 152 130 153 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF573-202 - 577 1e-56 184.7 138.6 5 19 9.5e-05 0.071 14.0 0.4 1 23 158 180 158 181 0.91 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF573-202 - 577 1e-56 184.7 138.6 6 19 0.00015 0.11 13.4 1.0 1 19 186 204 186 208 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF573-202 - 577 1e-56 184.7 138.6 7 19 0.00016 0.12 13.3 0.9 1 23 214 236 214 237 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF573-202 - 577 1e-56 184.7 138.6 8 19 0.00044 0.33 11.9 0.5 1 23 242 264 242 265 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF573-202 - 577 1e-56 184.7 138.6 9 19 9.8e-05 0.073 13.9 1.2 1 23 270 292 270 293 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF573-202 - 577 1e-56 184.7 138.6 10 19 2.2e-06 0.0016 19.1 1.5 1 23 298 320 298 321 0.97 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF573-202 - 577 1e-56 184.7 138.6 11 19 2.2e-05 0.017 16.0 0.6 1 23 326 348 326 349 0.89 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF573-202 - 577 1e-56 184.7 138.6 12 19 0.0001 0.078 13.9 1.4 1 23 354 376 354 377 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF573-202 - 577 1e-56 184.7 138.6 13 19 8.1e-06 0.0061 17.3 0.3 1 23 382 404 382 405 0.97 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF573-202 - 577 1e-56 184.7 138.6 14 19 1.9e-05 0.014 16.2 1.9 1 23 410 432 410 433 0.87 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF573-202 - 577 1e-56 184.7 138.6 15 19 0.0013 1 10.4 1.5 1 23 438 460 438 461 0.89 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF573-202 - 577 1e-56 184.7 138.6 16 19 2e-05 0.015 16.1 1.4 1 23 466 488 466 489 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF573-202 - 577 1e-56 184.7 138.6 17 19 7.4e-05 0.055 14.3 0.5 1 23 494 516 494 517 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF573-202 - 577 1e-56 184.7 138.6 18 19 1.4e-05 0.011 16.5 0.2 1 23 522 544 522 545 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF573-202 - 577 1e-56 184.7 138.6 19 19 8.5e-06 0.0063 17.2 0.5 1 23 550 572 550 573 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF573-202 - 577 3.1e-53 176.9 144.8 1 19 0.00038 0.29 11.2 4.1 2 21 46 65 45 68 0.89 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF573-202 - 577 3.1e-53 176.9 144.8 2 19 3.7e-06 0.0028 17.6 2.0 2 22 74 94 74 98 0.90 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF573-202 - 577 3.1e-53 176.9 144.8 3 19 1.9e-06 0.0014 18.5 1.2 2 23 102 123 102 127 0.90 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF573-202 - 577 3.1e-53 176.9 144.8 4 19 0.016 12 6.1 0.3 2 11 130 139 129 141 0.92 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF573-202 - 577 3.1e-53 176.9 144.8 5 19 0.001 0.76 9.8 0.6 2 20 158 176 158 181 0.78 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF573-202 - 577 3.1e-53 176.9 144.8 6 19 6.6e-05 0.049 13.6 0.6 2 20 186 204 186 204 0.83 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF573-202 - 577 3.1e-53 176.9 144.8 7 19 0.0046 3.4 7.8 0.8 2 22 214 234 214 238 0.87 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF573-202 - 577 3.1e-53 176.9 144.8 8 19 0.0025 1.9 8.6 0.3 2 13 242 253 242 254 0.90 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF573-202 - 577 3.1e-53 176.9 144.8 9 19 1.5e-05 0.011 15.7 0.9 2 20 270 288 270 292 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF573-202 - 577 3.1e-53 176.9 144.8 10 19 2.1e-06 0.0016 18.4 2.9 2 24 298 320 297 323 0.95 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF573-202 - 577 3.1e-53 176.9 144.8 11 19 0.0006 0.45 10.6 1.0 2 12 326 336 326 348 0.86 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF573-202 - 577 3.1e-53 176.9 144.8 12 19 9.4e-06 0.007 16.3 1.7 1 20 353 372 353 376 0.92 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF573-202 - 577 3.1e-53 176.9 144.8 13 19 3.5e-09 2.6e-06 27.3 0.6 2 24 382 404 381 407 0.95 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF573-202 - 577 3.1e-53 176.9 144.8 14 19 0.00044 0.33 11.0 1.1 2 12 410 420 410 421 0.95 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF573-202 - 577 3.1e-53 176.9 144.8 15 19 0.00018 0.13 12.3 0.7 2 21 438 457 438 463 0.86 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF573-202 - 577 3.1e-53 176.9 144.8 16 19 7.3e-05 0.055 13.5 1.0 2 20 466 484 466 490 0.82 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF573-202 - 577 3.1e-53 176.9 144.8 17 19 4.1e-05 0.031 14.3 1.9 2 22 494 514 494 517 0.87 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF573-202 - 577 3.1e-53 176.9 144.8 18 19 9.7e-05 0.072 13.1 0.3 2 20 522 540 522 546 0.84 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF573-202 - 577 3.1e-53 176.9 144.8 19 19 5.2e-08 3.9e-05 23.5 0.8 2 26 550 574 550 575 0.96 C2H2-type zinc finger zf-C2H2_jaz PF12171.8 27 ZNF573-202 - 577 2e-26 91.7 89.1 1 19 0.027 20 5.6 0.8 2 20 46 64 45 64 0.89 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF573-202 - 577 2e-26 91.7 89.1 2 19 0.00031 0.23 11.8 0.1 2 22 74 94 73 94 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF573-202 - 577 2e-26 91.7 89.1 3 19 0.00042 0.32 11.3 0.0 2 22 102 122 101 122 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF573-202 - 577 2e-26 91.7 89.1 4 19 0.78 5.8e+02 0.9 0.4 2 22 130 150 129 150 0.86 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF573-202 - 577 2e-26 91.7 89.1 5 19 0.24 1.8e+02 2.6 0.0 2 12 158 168 157 177 0.90 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF573-202 - 577 2e-26 91.7 89.1 6 19 0.00025 0.19 12.1 0.1 2 20 186 204 185 204 0.95 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF573-202 - 577 2e-26 91.7 89.1 7 19 0.2 1.5e+02 2.8 0.0 2 22 214 234 213 234 0.91 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF573-202 - 577 2e-26 91.7 89.1 8 19 0.0023 1.7 9.0 0.0 2 22 242 262 241 262 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF573-202 - 577 2e-26 91.7 89.1 9 19 0.0091 6.8 7.1 0.3 2 11 270 279 269 290 0.88 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF573-202 - 577 2e-26 91.7 89.1 10 19 0.048 36 4.8 1.3 2 24 298 320 297 320 0.90 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF573-202 - 577 2e-26 91.7 89.1 11 19 0.12 93 3.5 0.5 2 12 326 336 325 346 0.86 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF573-202 - 577 2e-26 91.7 89.1 12 19 0.0063 4.7 7.6 0.6 2 11 354 363 353 374 0.89 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF573-202 - 577 2e-26 91.7 89.1 13 19 0.00032 0.24 11.7 0.3 2 24 382 404 381 404 0.95 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF573-202 - 577 2e-26 91.7 89.1 14 19 0.0064 4.8 7.6 0.7 2 22 410 430 409 430 0.85 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF573-202 - 577 2e-26 91.7 89.1 15 19 0.012 9.1 6.7 0.5 2 11 438 447 437 448 0.91 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF573-202 - 577 2e-26 91.7 89.1 16 19 5.9e-05 0.044 14.1 0.1 2 21 466 485 465 486 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF573-202 - 577 2e-26 91.7 89.1 17 19 0.024 18 5.8 0.5 2 21 494 513 493 514 0.78 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF573-202 - 577 2e-26 91.7 89.1 18 19 2.8e-05 0.021 15.1 0.0 2 22 522 542 521 542 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF573-202 - 577 2e-26 91.7 89.1 19 19 0.016 12 6.4 0.0 2 22 550 570 549 570 0.90 Zinc-finger double-stranded RNA-binding Zn-ribbon_8 PF09723.10 40 ZNF573-202 - 577 3.2e-23 81.5 107.0 1 17 0.0007 0.52 10.5 5.2 6 37 46 84 44 85 0.80 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF573-202 - 577 3.2e-23 81.5 107.0 2 17 0.0001 0.076 13.2 5.9 6 37 74 112 73 113 0.90 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF573-202 - 577 3.2e-23 81.5 107.0 3 17 3.2e-05 0.024 14.7 4.4 6 34 102 137 100 140 0.94 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF573-202 - 577 3.2e-23 81.5 107.0 4 17 6.7e-06 0.005 16.9 4.5 6 38 158 197 157 199 0.91 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF573-202 - 577 3.2e-23 81.5 107.0 5 17 5.1e-06 0.0038 17.3 3.7 6 38 186 225 184 225 0.83 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF573-202 - 577 3.2e-23 81.5 107.0 6 17 3.9e-05 0.029 14.5 2.5 6 34 214 249 213 254 0.92 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF573-202 - 577 3.2e-23 81.5 107.0 7 17 0.00041 0.31 11.2 4.5 6 35 270 306 269 309 0.84 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF573-202 - 577 3.2e-23 81.5 107.0 8 17 0.00067 0.5 10.5 5.5 6 34 298 333 297 336 0.90 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF573-202 - 577 3.2e-23 81.5 107.0 9 17 0.0081 6.1 7.1 0.7 6 16 326 336 325 349 0.83 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF573-202 - 577 3.2e-23 81.5 107.0 10 17 0.0017 1.3 9.2 4.1 6 34 354 389 353 393 0.84 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF573-202 - 577 3.2e-23 81.5 107.0 11 17 0.0064 4.8 7.4 6.0 6 34 382 417 381 419 0.82 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF573-202 - 577 3.2e-23 81.5 107.0 12 17 0.00022 0.16 12.1 3.8 6 34 410 445 409 448 0.90 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF573-202 - 577 3.2e-23 81.5 107.0 13 17 1.5e-05 0.011 15.8 3.6 6 38 438 477 436 479 0.88 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF573-202 - 577 3.2e-23 81.5 107.0 14 17 1.5e-05 0.012 15.8 5.3 6 35 466 502 465 506 0.88 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF573-202 - 577 3.2e-23 81.5 107.0 15 17 9.7e-06 0.0073 16.4 4.1 6 38 494 533 493 535 0.92 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF573-202 - 577 3.2e-23 81.5 107.0 16 17 9.9e-05 0.074 13.2 4.7 6 36 522 559 521 561 0.84 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF573-202 - 577 3.2e-23 81.5 107.0 17 17 0.009 6.7 6.9 0.2 6 16 550 560 549 573 0.83 Zinc ribbon domain zf_UBZ PF18439.1 32 ZNF573-202 - 577 2.2e-14 52.7 83.8 1 19 0.011 8 6.2 0.3 3 17 46 61 44 69 0.76 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF573-202 - 577 2.2e-14 52.7 83.8 2 19 0.0076 5.7 6.6 0.1 3 21 74 93 72 97 0.79 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF573-202 - 577 2.2e-14 52.7 83.8 3 19 0.0074 5.5 6.7 0.1 3 21 102 121 100 125 0.81 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF573-202 - 577 2.2e-14 52.7 83.8 4 19 0.036 27 4.5 0.1 2 12 129 139 128 148 0.88 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF573-202 - 577 2.2e-14 52.7 83.8 5 19 0.037 28 4.4 0.1 3 13 158 168 156 173 0.87 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF573-202 - 577 2.2e-14 52.7 83.8 6 19 0.0012 0.88 9.2 0.1 3 20 186 204 184 208 0.86 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF573-202 - 577 2.2e-14 52.7 83.8 7 19 0.0089 6.6 6.4 0.1 3 12 214 223 212 233 0.80 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF573-202 - 577 2.2e-14 52.7 83.8 8 19 0.11 84 2.9 0.2 3 10 242 249 240 255 0.86 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF573-202 - 577 2.2e-14 52.7 83.8 9 19 0.027 20 4.9 0.2 3 13 270 280 268 289 0.79 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF573-202 - 577 2.2e-14 52.7 83.8 10 19 0.059 44 3.8 0.1 3 13 298 308 296 317 0.79 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF573-202 - 577 2.2e-14 52.7 83.8 11 19 0.014 10 5.8 0.1 3 14 326 337 324 345 0.80 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF573-202 - 577 2.2e-14 52.7 83.8 12 19 0.022 16 5.2 0.3 2 13 353 364 352 373 0.79 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF573-202 - 577 2.2e-14 52.7 83.8 13 19 0.029 22 4.8 0.1 3 14 382 393 380 401 0.77 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF573-202 - 577 2.2e-14 52.7 83.8 14 19 0.00078 0.58 9.8 0.2 3 21 410 429 408 429 0.87 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF573-202 - 577 2.2e-14 52.7 83.8 15 19 3.2 2.4e+03 -1.8 0.4 3 12 438 447 436 449 0.86 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF573-202 - 577 2.2e-14 52.7 83.8 16 19 0.015 11 5.7 0.3 3 17 466 481 464 485 0.76 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF573-202 - 577 2.2e-14 52.7 83.8 17 19 0.01 7.7 6.2 0.1 3 20 494 512 492 513 0.77 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF573-202 - 577 2.2e-14 52.7 83.8 18 19 0.0058 4.3 7.0 0.1 3 20 522 540 520 541 0.82 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF573-202 - 577 2.2e-14 52.7 83.8 19 19 0.0092 6.9 6.4 0.1 3 12 550 559 548 569 0.87 Ubiquitin-Binding Zinc Finger XPA_N PF01286.18 32 ZNF573-202 - 577 1.4e-13 50.6 81.2 1 19 0.029 22 5.2 0.5 3 13 47 57 46 61 0.86 XPA protein N-terminal XPA_N PF01286.18 32 ZNF573-202 - 577 1.4e-13 50.6 81.2 2 19 0.0074 5.5 7.1 0.1 3 13 75 85 73 90 0.84 XPA protein N-terminal XPA_N PF01286.18 32 ZNF573-202 - 577 1.4e-13 50.6 81.2 3 19 0.013 9.4 6.4 0.1 3 13 103 113 101 119 0.83 XPA protein N-terminal XPA_N PF01286.18 32 ZNF573-202 - 577 1.4e-13 50.6 81.2 4 19 0.11 79 3.4 0.1 3 11 131 139 130 142 0.90 XPA protein N-terminal XPA_N PF01286.18 32 ZNF573-202 - 577 1.4e-13 50.6 81.2 5 19 0.022 17 5.6 0.1 3 12 159 168 157 170 0.88 XPA protein N-terminal XPA_N PF01286.18 32 ZNF573-202 - 577 1.4e-13 50.6 81.2 6 19 0.0069 5.1 7.2 0.1 3 12 187 196 185 204 0.87 XPA protein N-terminal XPA_N PF01286.18 32 ZNF573-202 - 577 1.4e-13 50.6 81.2 7 19 0.038 28 4.8 0.1 3 11 215 223 213 225 0.88 XPA protein N-terminal XPA_N PF01286.18 32 ZNF573-202 - 577 1.4e-13 50.6 81.2 8 19 0.081 60 3.8 0.1 3 13 243 253 241 259 0.78 XPA protein N-terminal XPA_N PF01286.18 32 ZNF573-202 - 577 1.4e-13 50.6 81.2 9 19 0.035 26 4.9 0.5 3 12 271 280 269 281 0.89 XPA protein N-terminal XPA_N PF01286.18 32 ZNF573-202 - 577 1.4e-13 50.6 81.2 10 19 0.24 1.8e+02 2.3 0.2 3 18 299 315 298 316 0.73 XPA protein N-terminal XPA_N PF01286.18 32 ZNF573-202 - 577 1.4e-13 50.6 81.2 11 19 0.012 9.3 6.4 0.1 3 12 327 336 325 341 0.90 XPA protein N-terminal XPA_N PF01286.18 32 ZNF573-202 - 577 1.4e-13 50.6 81.2 12 19 0.097 73 3.5 1.5 3 12 355 364 354 365 0.90 XPA protein N-terminal XPA_N PF01286.18 32 ZNF573-202 - 577 1.4e-13 50.6 81.2 13 19 0.12 92 3.2 0.2 3 10 383 390 382 394 0.87 XPA protein N-terminal XPA_N PF01286.18 32 ZNF573-202 - 577 1.4e-13 50.6 81.2 14 19 0.0075 5.6 7.1 0.1 3 12 411 420 409 427 0.88 XPA protein N-terminal XPA_N PF01286.18 32 ZNF573-202 - 577 1.4e-13 50.6 81.2 15 19 0.38 2.8e+02 1.7 0.2 19 27 437 445 435 447 0.74 XPA protein N-terminal XPA_N PF01286.18 32 ZNF573-202 - 577 1.4e-13 50.6 81.2 16 19 0.0034 2.5 8.2 0.1 3 14 467 478 465 483 0.88 XPA protein N-terminal XPA_N PF01286.18 32 ZNF573-202 - 577 1.4e-13 50.6 81.2 17 19 0.0098 7.4 6.7 0.1 3 12 495 504 493 511 0.89 XPA protein N-terminal XPA_N PF01286.18 32 ZNF573-202 - 577 1.4e-13 50.6 81.2 18 19 0.0096 7.2 6.8 0.1 3 12 523 532 521 538 0.89 XPA protein N-terminal XPA_N PF01286.18 32 ZNF573-202 - 577 1.4e-13 50.6 81.2 19 19 0.092 69 3.6 0.0 3 11 551 559 549 561 0.89 XPA protein N-terminal C1_4 PF07975.12 55 ZNF573-202 - 577 9.8e-09 35.3 92.5 1 18 0.0061 4.5 7.6 1.0 21 48 41 68 26 71 0.74 TFIIH C1-like domain C1_4 PF07975.12 55 ZNF573-202 - 577 9.8e-09 35.3 92.5 2 18 0.02 15 5.9 5.1 1 48 47 96 47 99 0.79 TFIIH C1-like domain C1_4 PF07975.12 55 ZNF573-202 - 577 9.8e-09 35.3 92.5 3 18 0.0099 7.4 6.9 1.9 1 48 75 124 75 126 0.85 TFIIH C1-like domain C1_4 PF07975.12 55 ZNF573-202 - 577 9.8e-09 35.3 92.5 4 18 0.00011 0.08 13.2 2.7 1 49 103 153 103 155 0.92 TFIIH C1-like domain C1_4 PF07975.12 55 ZNF573-202 - 577 9.8e-09 35.3 92.5 5 18 0.083 62 3.9 0.1 26 49 158 181 155 184 0.90 TFIIH C1-like domain C1_4 PF07975.12 55 ZNF573-202 - 577 9.8e-09 35.3 92.5 6 18 0.032 24 5.3 2.1 2 48 188 236 187 239 0.82 TFIIH C1-like domain C1_4 PF07975.12 55 ZNF573-202 - 577 9.8e-09 35.3 92.5 7 18 0.0099 7.4 6.9 1.3 2 48 216 264 215 267 0.81 TFIIH C1-like domain C1_4 PF07975.12 55 ZNF573-202 - 577 9.8e-09 35.3 92.5 8 18 0.0076 5.7 7.3 0.6 25 49 269 293 258 295 0.85 TFIIH C1-like domain C1_4 PF07975.12 55 ZNF573-202 - 577 9.8e-09 35.3 92.5 9 18 0.00052 0.38 11.0 3.1 1 49 271 321 271 324 0.86 TFIIH C1-like domain C1_4 PF07975.12 55 ZNF573-202 - 577 9.8e-09 35.3 92.5 10 18 0.0069 5.1 7.4 2.3 1 48 299 348 299 351 0.76 TFIIH C1-like domain C1_4 PF07975.12 55 ZNF573-202 - 577 9.8e-09 35.3 92.5 11 18 0.0049 3.6 7.9 4.7 2 49 328 377 327 379 0.74 TFIIH C1-like domain C1_4 PF07975.12 55 ZNF573-202 - 577 9.8e-09 35.3 92.5 12 18 0.0061 4.5 7.6 3.1 1 48 355 404 355 408 0.77 TFIIH C1-like domain C1_4 PF07975.12 55 ZNF573-202 - 577 9.8e-09 35.3 92.5 13 18 0.0042 3.1 8.1 2.6 2 49 384 433 383 436 0.81 TFIIH C1-like domain C1_4 PF07975.12 55 ZNF573-202 - 577 9.8e-09 35.3 92.5 14 18 0.014 10 6.4 4.3 2 49 412 461 411 463 0.77 TFIIH C1-like domain C1_4 PF07975.12 55 ZNF573-202 - 577 9.8e-09 35.3 92.5 15 18 0.039 29 5.0 4.2 1 48 439 488 439 491 0.84 TFIIH C1-like domain C1_4 PF07975.12 55 ZNF573-202 - 577 9.8e-09 35.3 92.5 16 18 0.017 12 6.2 3.4 1 48 467 516 467 518 0.78 TFIIH C1-like domain C1_4 PF07975.12 55 ZNF573-202 - 577 9.8e-09 35.3 92.5 17 18 0.0029 2.2 8.6 1.7 2 49 496 545 495 547 0.80 TFIIH C1-like domain C1_4 PF07975.12 55 ZNF573-202 - 577 9.8e-09 35.3 92.5 18 18 0.011 8.2 6.8 1.3 1 48 523 572 523 575 0.79 TFIIH C1-like domain zinc_ribbon_15 PF17032.5 86 ZNF573-202 - 577 1.7e-08 35.0 80.7 1 13 0.005 3.7 8.4 2.2 30 79 38 87 15 92 0.82 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF573-202 - 577 1.7e-08 35.0 80.7 2 13 0.0079 5.9 7.7 1.5 33 74 97 138 87 144 0.85 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF573-202 - 577 1.7e-08 35.0 80.7 3 13 0.008 6 7.7 0.9 31 76 123 168 118 174 0.81 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF573-202 - 577 1.7e-08 35.0 80.7 4 13 0.0038 2.8 8.7 1.0 34 77 154 197 144 203 0.82 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF573-202 - 577 1.7e-08 35.0 80.7 5 13 0.00034 0.25 12.1 1.2 32 75 180 223 172 231 0.88 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF573-202 - 577 1.7e-08 35.0 80.7 6 13 0.0032 2.4 9.0 1.2 33 75 209 251 201 257 0.82 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF573-202 - 577 1.7e-08 35.0 80.7 7 13 0.079 59 4.5 2.1 32 75 236 279 231 284 0.79 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF573-202 - 577 1.7e-08 35.0 80.7 8 13 0.0047 3.5 8.4 6.7 30 74 290 334 253 337 0.79 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF573-202 - 577 1.7e-08 35.0 80.7 9 13 0.0078 5.8 7.7 2.6 31 76 347 392 343 397 0.84 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF573-202 - 577 1.7e-08 35.0 80.7 10 13 0.0049 3.7 8.4 6.7 31 75 375 419 356 424 0.88 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF573-202 - 577 1.7e-08 35.0 80.7 11 13 0.0034 2.5 8.9 1.9 30 75 402 447 397 453 0.85 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF573-202 - 577 1.7e-08 35.0 80.7 12 13 0.0017 1.3 9.8 2.6 32 75 460 503 455 508 0.87 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF573-202 - 577 1.7e-08 35.0 80.7 13 13 0.0022 1.6 9.5 1.2 33 75 517 559 508 564 0.84 zinc-ribbon family zf-C2H2_11 PF16622.5 29 ZNF573-202 - 577 2.1e-08 33.8 86.5 1 19 0.2 1.5e+02 2.3 1.4 7 20 48 61 46 68 0.79 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF573-202 - 577 2.1e-08 33.8 86.5 2 19 0.044 33 4.4 0.2 6 23 75 92 73 95 0.80 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF573-202 - 577 2.1e-08 33.8 86.5 3 19 0.015 11 5.8 0.1 6 23 103 120 100 123 0.81 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF573-202 - 577 2.1e-08 33.8 86.5 4 19 0.026 19 5.1 0.1 3 14 128 139 127 146 0.75 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF573-202 - 577 2.1e-08 33.8 86.5 5 19 0.0018 1.3 8.8 0.4 6 25 159 178 157 180 0.86 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF573-202 - 577 2.1e-08 33.8 86.5 6 19 0.045 34 4.3 0.1 5 15 186 196 183 205 0.83 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF573-202 - 577 2.1e-08 33.8 86.5 7 19 4.3 3.2e+03 -2.0 0.2 7 14 216 223 211 223 0.85 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF573-202 - 577 2.1e-08 33.8 86.5 8 19 0.18 1.3e+02 2.4 0.1 6 16 243 253 241 263 0.87 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF573-202 - 577 2.1e-08 33.8 86.5 9 19 0.006 4.4 7.1 0.1 6 26 271 291 269 292 0.90 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF573-202 - 577 2.1e-08 33.8 86.5 10 19 0.12 92 2.9 0.6 7 16 300 309 298 317 0.78 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF573-202 - 577 2.1e-08 33.8 86.5 11 19 0.0032 2.4 8.0 0.1 6 26 327 347 324 348 0.91 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF573-202 - 577 2.1e-08 33.8 86.5 12 19 0.0073 5.5 6.8 0.3 7 26 356 375 354 376 0.90 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF573-202 - 577 2.1e-08 33.8 86.5 13 19 0.025 19 5.1 0.1 7 24 384 401 382 403 0.84 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF573-202 - 577 2.1e-08 33.8 86.5 14 19 0.00011 0.081 12.7 0.2 5 26 410 431 407 432 0.92 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF573-202 - 577 2.1e-08 33.8 86.5 15 19 5.5 4.1e+03 -2.4 0.2 9 13 439 443 438 448 0.80 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF573-202 - 577 2.1e-08 33.8 86.5 16 19 0.43 3.2e+02 1.2 0.1 5 14 466 475 462 487 0.76 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF573-202 - 577 2.1e-08 33.8 86.5 17 19 0.13 1e+02 2.8 0.0 6 26 495 515 490 516 0.81 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF573-202 - 577 2.1e-08 33.8 86.5 18 19 0.029 21 5.0 0.0 6 26 523 543 521 544 0.88 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF573-202 - 577 2.1e-08 33.8 86.5 19 19 0.27 2e+02 1.8 0.5 7 26 552 571 550 572 0.86 zinc-finger C2H2-type DUF3850 PF12961.7 77 ZNF573-202 - 577 1.7e-07 31.1 4.5 1 9 0.023 17 5.5 0.0 2 39 27 64 26 84 0.89 Domain of unknown function (DUF3850) DUF3850 PF12961.7 77 ZNF573-202 - 577 1.7e-07 31.1 4.5 2 9 0.27 2e+02 2.1 0.0 15 59 96 141 89 146 0.72 Domain of unknown function (DUF3850) DUF3850 PF12961.7 77 ZNF573-202 - 577 1.7e-07 31.1 4.5 3 9 0.037 27 4.9 0.0 11 40 148 177 143 194 0.84 Domain of unknown function (DUF3850) DUF3850 PF12961.7 77 ZNF573-202 - 577 1.7e-07 31.1 4.5 4 9 0.52 3.9e+02 1.2 0.0 12 39 233 260 228 284 0.72 Domain of unknown function (DUF3850) DUF3850 PF12961.7 77 ZNF573-202 - 577 1.7e-07 31.1 4.5 5 9 0.099 74 3.5 0.0 12 36 289 313 280 331 0.82 Domain of unknown function (DUF3850) DUF3850 PF12961.7 77 ZNF573-202 - 577 1.7e-07 31.1 4.5 6 9 0.96 7.2e+02 0.3 0.0 10 26 343 359 339 365 0.79 Domain of unknown function (DUF3850) DUF3850 PF12961.7 77 ZNF573-202 - 577 1.7e-07 31.1 4.5 7 9 0.065 49 4.1 0.0 12 37 373 398 362 415 0.82 Domain of unknown function (DUF3850) DUF3850 PF12961.7 77 ZNF573-202 - 577 1.7e-07 31.1 4.5 8 9 5.2 3.9e+03 -2.0 0.0 12 33 457 478 454 499 0.77 Domain of unknown function (DUF3850) DUF3850 PF12961.7 77 ZNF573-202 - 577 1.7e-07 31.1 4.5 9 9 7.1 5.3e+03 -2.5 0.0 13 31 514 532 510 561 0.65 Domain of unknown function (DUF3850) # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF573-202.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF573-202.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF573-202.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF573-202.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF573-202.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:09:37 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF573-203.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF573-203.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF573-203.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF573-203.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF573-203.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:09:37 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZNF573-204 - 578 2.2e-133 429.3 158.8 1 20 0.0016 1.2 9.7 2.9 12 26 44 58 42 58 0.89 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF573-204 - 578 2.2e-133 429.3 158.8 2 20 3.9e-06 0.0029 18.0 1.1 5 25 65 85 61 86 0.89 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF573-204 - 578 2.2e-133 429.3 158.8 3 20 7.8e-11 5.8e-08 32.8 1.0 2 25 90 113 89 114 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF573-204 - 578 2.2e-133 429.3 158.8 4 20 1.5e-09 1.1e-06 28.8 0.6 2 24 118 140 117 142 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF573-204 - 578 2.2e-133 429.3 158.8 5 20 6.6e-09 4.9e-06 26.7 0.3 3 25 147 169 145 170 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF573-204 - 578 2.2e-133 429.3 158.8 6 20 1.5e-11 1.1e-08 35.1 2.9 1 25 173 197 173 198 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF573-204 - 578 2.2e-133 429.3 158.8 7 20 3e-06 0.0022 18.3 0.4 1 25 201 225 201 226 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF573-204 - 578 2.2e-133 429.3 158.8 8 20 9.2e-11 6.9e-08 32.6 1.0 2 26 230 254 229 254 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF573-204 - 578 2.2e-133 429.3 158.8 9 20 3.6e-08 2.7e-05 24.4 2.6 5 25 261 281 258 281 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF573-204 - 578 2.2e-133 429.3 158.8 10 20 2e-10 1.5e-07 31.5 0.8 1 26 285 310 285 310 0.97 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF573-204 - 578 2.2e-133 429.3 158.8 11 20 1e-10 7.5e-08 32.5 2.3 2 25 314 337 313 337 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF573-204 - 578 2.2e-133 429.3 158.8 12 20 7.9e-08 5.9e-05 23.3 5.3 2 25 342 365 341 365 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF573-204 - 578 2.2e-133 429.3 158.8 13 20 7.4e-10 5.5e-07 29.7 0.4 1 26 369 394 369 394 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF573-204 - 578 2.2e-133 429.3 158.8 14 20 3.7e-11 2.8e-08 33.8 1.9 1 25 397 421 397 421 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF573-204 - 578 2.2e-133 429.3 158.8 15 20 9.5e-11 7.1e-08 32.5 1.7 2 25 426 449 425 449 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF573-204 - 578 2.2e-133 429.3 158.8 16 20 2.1e-09 1.5e-06 28.3 0.8 1 25 453 477 453 478 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF573-204 - 578 2.2e-133 429.3 158.8 17 20 7.1e-08 5.3e-05 23.5 1.8 1 25 481 505 481 505 0.97 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF573-204 - 578 2.2e-133 429.3 158.8 18 20 1.3e-10 9.7e-08 32.1 0.8 2 25 510 533 509 534 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF573-204 - 578 2.2e-133 429.3 158.8 19 20 1.7e-11 1.3e-08 34.9 0.6 1 25 537 561 537 562 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF573-204 - 578 2.2e-133 429.3 158.8 20 20 0.57 4.3e+02 1.6 0.2 1 11 565 575 565 577 0.86 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZNF573-204 - 578 7.1e-95 306.5 147.8 1 19 8.7e-05 0.065 13.7 4.3 1 23 47 69 47 69 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF573-204 - 578 7.1e-95 306.5 147.8 2 19 8e-07 0.0006 20.1 1.4 1 23 75 97 75 97 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF573-204 - 578 7.1e-95 306.5 147.8 3 19 2.9e-07 0.00021 21.5 1.0 1 23 103 125 103 125 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF573-204 - 578 7.1e-95 306.5 147.8 4 19 5e-06 0.0038 17.6 0.4 1 23 131 153 131 153 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF573-204 - 578 7.1e-95 306.5 147.8 5 19 1.5e-07 0.00011 22.4 0.3 1 23 159 181 159 181 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF573-204 - 578 7.1e-95 306.5 147.8 6 19 2.6e-08 1.9e-05 24.8 1.3 1 23 187 209 187 209 0.93 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF573-204 - 578 7.1e-95 306.5 147.8 7 19 1.1e-07 8.1e-05 22.9 1.1 1 23 215 237 215 237 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF573-204 - 578 7.1e-95 306.5 147.8 8 19 6.2e-07 0.00047 20.5 0.5 1 23 243 265 243 265 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF573-204 - 578 7.1e-95 306.5 147.8 9 19 1e-06 0.00077 19.8 2.3 1 23 271 293 271 293 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF573-204 - 578 7.1e-95 306.5 147.8 10 19 1.3e-06 0.00097 19.5 2.1 1 23 299 321 299 321 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF573-204 - 578 7.1e-95 306.5 147.8 11 19 1.1e-06 0.00085 19.7 0.5 1 23 327 349 327 349 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF573-204 - 578 7.1e-95 306.5 147.8 12 19 1.5e-06 0.0011 19.3 2.3 1 23 355 377 355 377 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF573-204 - 578 7.1e-95 306.5 147.8 13 19 2.6e-07 0.00019 21.7 0.3 1 23 383 405 383 405 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF573-204 - 578 7.1e-95 306.5 147.8 14 19 1.1e-06 0.00079 19.7 2.6 1 23 411 433 411 433 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF573-204 - 578 7.1e-95 306.5 147.8 15 19 6.5e-06 0.0048 17.3 2.4 1 23 439 461 439 461 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF573-204 - 578 7.1e-95 306.5 147.8 16 19 2.5e-09 1.8e-06 28.0 2.2 1 23 467 489 467 489 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF573-204 - 578 7.1e-95 306.5 147.8 17 19 3.6e-07 0.00027 21.2 0.6 1 23 495 517 495 517 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF573-204 - 578 7.1e-95 306.5 147.8 18 19 2.9e-09 2.2e-06 27.8 0.1 1 23 523 545 523 545 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF573-204 - 578 7.1e-95 306.5 147.8 19 19 5e-08 3.7e-05 23.9 0.5 1 23 551 573 551 573 0.99 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZNF573-204 - 578 1e-56 184.6 138.6 1 19 0.00059 0.44 11.5 3.0 1 23 47 69 47 70 0.84 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF573-204 - 578 1e-56 184.6 138.6 2 19 7e-05 0.052 14.4 1.0 1 23 75 97 75 98 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF573-204 - 578 1e-56 184.6 138.6 3 19 1.2e-05 0.0089 16.8 0.8 1 23 103 125 103 126 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF573-204 - 578 1e-56 184.6 138.6 4 19 0.00073 0.55 11.2 0.4 1 23 131 153 131 154 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF573-204 - 578 1e-56 184.6 138.6 5 19 9.5e-05 0.071 14.0 0.4 1 23 159 181 159 182 0.91 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF573-204 - 578 1e-56 184.6 138.6 6 19 0.00015 0.11 13.4 1.0 1 19 187 205 187 209 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF573-204 - 578 1e-56 184.6 138.6 7 19 0.00016 0.12 13.3 0.9 1 23 215 237 215 238 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF573-204 - 578 1e-56 184.6 138.6 8 19 0.00044 0.33 11.9 0.5 1 23 243 265 243 266 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF573-204 - 578 1e-56 184.6 138.6 9 19 9.8e-05 0.073 13.9 1.2 1 23 271 293 271 294 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF573-204 - 578 1e-56 184.6 138.6 10 19 2.2e-06 0.0016 19.1 1.5 1 23 299 321 299 322 0.97 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF573-204 - 578 1e-56 184.6 138.6 11 19 2.2e-05 0.017 16.0 0.6 1 23 327 349 327 350 0.89 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF573-204 - 578 1e-56 184.6 138.6 12 19 0.0001 0.078 13.9 1.4 1 23 355 377 355 378 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF573-204 - 578 1e-56 184.6 138.6 13 19 8.1e-06 0.0061 17.3 0.3 1 23 383 405 383 406 0.97 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF573-204 - 578 1e-56 184.6 138.6 14 19 1.9e-05 0.014 16.2 1.9 1 23 411 433 411 434 0.87 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF573-204 - 578 1e-56 184.6 138.6 15 19 0.0013 1 10.4 1.5 1 23 439 461 439 462 0.89 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF573-204 - 578 1e-56 184.6 138.6 16 19 2e-05 0.015 16.1 1.4 1 23 467 489 467 490 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF573-204 - 578 1e-56 184.6 138.6 17 19 7.4e-05 0.055 14.3 0.5 1 23 495 517 495 518 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF573-204 - 578 1e-56 184.6 138.6 18 19 1.5e-05 0.011 16.5 0.2 1 23 523 545 523 546 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF573-204 - 578 1e-56 184.6 138.6 19 19 8.5e-06 0.0064 17.2 0.5 1 23 551 573 551 574 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF573-204 - 578 3.2e-53 176.9 144.8 1 19 0.00038 0.29 11.2 4.1 2 21 47 66 46 69 0.89 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF573-204 - 578 3.2e-53 176.9 144.8 2 19 3.7e-06 0.0028 17.6 2.0 2 22 75 95 75 99 0.90 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF573-204 - 578 3.2e-53 176.9 144.8 3 19 1.9e-06 0.0014 18.5 1.2 2 23 103 124 103 128 0.90 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF573-204 - 578 3.2e-53 176.9 144.8 4 19 0.016 12 6.1 0.3 2 11 131 140 130 142 0.92 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF573-204 - 578 3.2e-53 176.9 144.8 5 19 0.001 0.77 9.8 0.6 2 20 159 177 159 182 0.78 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF573-204 - 578 3.2e-53 176.9 144.8 6 19 6.6e-05 0.05 13.6 0.6 2 20 187 205 187 205 0.83 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF573-204 - 578 3.2e-53 176.9 144.8 7 19 0.0046 3.4 7.8 0.8 2 22 215 235 215 239 0.87 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF573-204 - 578 3.2e-53 176.9 144.8 8 19 0.0025 1.9 8.6 0.3 2 13 243 254 243 255 0.90 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF573-204 - 578 3.2e-53 176.9 144.8 9 19 1.5e-05 0.011 15.7 0.9 2 20 271 289 271 293 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF573-204 - 578 3.2e-53 176.9 144.8 10 19 2.1e-06 0.0016 18.4 2.9 2 24 299 321 298 324 0.95 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF573-204 - 578 3.2e-53 176.9 144.8 11 19 0.0006 0.45 10.6 1.0 2 12 327 337 327 349 0.86 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF573-204 - 578 3.2e-53 176.9 144.8 12 19 9.4e-06 0.007 16.3 1.7 1 20 354 373 354 377 0.92 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF573-204 - 578 3.2e-53 176.9 144.8 13 19 3.5e-09 2.6e-06 27.3 0.6 2 24 383 405 382 408 0.95 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF573-204 - 578 3.2e-53 176.9 144.8 14 19 0.00044 0.33 11.0 1.1 2 12 411 421 411 422 0.95 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF573-204 - 578 3.2e-53 176.9 144.8 15 19 0.00018 0.13 12.3 0.7 2 21 439 458 439 464 0.86 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF573-204 - 578 3.2e-53 176.9 144.8 16 19 7.3e-05 0.055 13.5 1.0 2 20 467 485 467 491 0.82 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF573-204 - 578 3.2e-53 176.9 144.8 17 19 4.2e-05 0.031 14.3 1.9 2 22 495 515 495 518 0.87 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF573-204 - 578 3.2e-53 176.9 144.8 18 19 9.7e-05 0.072 13.1 0.3 2 20 523 541 523 547 0.84 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF573-204 - 578 3.2e-53 176.9 144.8 19 19 5.3e-08 3.9e-05 23.5 0.8 2 26 551 575 551 576 0.96 C2H2-type zinc finger zf-C2H2_jaz PF12171.8 27 ZNF573-204 - 578 2.1e-26 91.6 89.1 1 19 0.027 20 5.6 0.8 2 20 47 65 46 65 0.89 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF573-204 - 578 2.1e-26 91.6 89.1 2 19 0.00031 0.23 11.8 0.1 2 22 75 95 74 95 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF573-204 - 578 2.1e-26 91.6 89.1 3 19 0.00043 0.32 11.3 0.0 2 22 103 123 102 123 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF573-204 - 578 2.1e-26 91.6 89.1 4 19 0.78 5.8e+02 0.9 0.4 2 22 131 151 130 151 0.86 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF573-204 - 578 2.1e-26 91.6 89.1 5 19 0.24 1.8e+02 2.6 0.0 2 12 159 169 158 178 0.90 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF573-204 - 578 2.1e-26 91.6 89.1 6 19 0.00025 0.19 12.1 0.1 2 20 187 205 186 205 0.95 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF573-204 - 578 2.1e-26 91.6 89.1 7 19 0.2 1.5e+02 2.8 0.0 2 22 215 235 214 235 0.91 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF573-204 - 578 2.1e-26 91.6 89.1 8 19 0.0023 1.7 9.0 0.0 2 22 243 263 242 263 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF573-204 - 578 2.1e-26 91.6 89.1 9 19 0.0092 6.8 7.1 0.3 2 11 271 280 270 291 0.88 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF573-204 - 578 2.1e-26 91.6 89.1 10 19 0.048 36 4.8 1.3 2 24 299 321 298 321 0.90 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF573-204 - 578 2.1e-26 91.6 89.1 11 19 0.12 93 3.5 0.5 2 12 327 337 326 347 0.86 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF573-204 - 578 2.1e-26 91.6 89.1 12 19 0.0063 4.7 7.6 0.6 2 11 355 364 354 375 0.89 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF573-204 - 578 2.1e-26 91.6 89.1 13 19 0.00032 0.24 11.7 0.3 2 24 383 405 382 405 0.95 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF573-204 - 578 2.1e-26 91.6 89.1 14 19 0.0064 4.8 7.6 0.7 2 22 411 431 410 431 0.85 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF573-204 - 578 2.1e-26 91.6 89.1 15 19 0.012 9.2 6.7 0.5 2 11 439 448 438 449 0.91 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF573-204 - 578 2.1e-26 91.6 89.1 16 19 5.9e-05 0.044 14.1 0.1 2 21 467 486 466 487 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF573-204 - 578 2.1e-26 91.6 89.1 17 19 0.024 18 5.8 0.5 2 21 495 514 494 515 0.78 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF573-204 - 578 2.1e-26 91.6 89.1 18 19 2.8e-05 0.021 15.1 0.0 2 22 523 543 522 543 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF573-204 - 578 2.1e-26 91.6 89.1 19 19 0.016 12 6.4 0.0 2 22 551 571 550 571 0.90 Zinc-finger double-stranded RNA-binding Zn-ribbon_8 PF09723.10 40 ZNF573-204 - 578 3.3e-23 81.5 107.0 1 17 0.0007 0.53 10.5 5.2 6 37 47 85 45 86 0.80 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF573-204 - 578 3.3e-23 81.5 107.0 2 17 0.0001 0.076 13.2 5.9 6 37 75 113 74 114 0.90 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF573-204 - 578 3.3e-23 81.5 107.0 3 17 3.2e-05 0.024 14.7 4.4 6 34 103 138 101 141 0.94 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF573-204 - 578 3.3e-23 81.5 107.0 4 17 6.8e-06 0.0051 16.9 4.6 6 38 159 198 158 200 0.91 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF573-204 - 578 3.3e-23 81.5 107.0 5 17 5.2e-06 0.0039 17.3 3.7 6 38 187 226 185 226 0.83 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF573-204 - 578 3.3e-23 81.5 107.0 6 17 3.9e-05 0.029 14.5 2.5 6 34 215 250 214 255 0.92 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF573-204 - 578 3.3e-23 81.5 107.0 7 17 0.00041 0.31 11.2 4.5 6 35 271 307 270 310 0.84 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF573-204 - 578 3.3e-23 81.5 107.0 8 17 0.00067 0.5 10.5 5.5 6 34 299 334 298 337 0.90 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF573-204 - 578 3.3e-23 81.5 107.0 9 17 0.0082 6.1 7.1 0.7 6 16 327 337 326 350 0.83 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF573-204 - 578 3.3e-23 81.5 107.0 10 17 0.0017 1.3 9.2 4.1 6 34 355 390 354 394 0.84 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF573-204 - 578 3.3e-23 81.5 107.0 11 17 0.0064 4.8 7.4 6.0 6 34 383 418 382 420 0.82 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF573-204 - 578 3.3e-23 81.5 107.0 12 17 0.00022 0.17 12.1 3.8 6 34 411 446 410 449 0.90 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF573-204 - 578 3.3e-23 81.5 107.0 13 17 1.5e-05 0.011 15.8 3.6 6 38 439 478 437 480 0.88 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF573-204 - 578 3.3e-23 81.5 107.0 14 17 1.5e-05 0.011 15.8 5.3 6 35 467 503 466 507 0.88 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF573-204 - 578 3.3e-23 81.5 107.0 15 17 9.4e-06 0.007 16.5 4.1 6 38 495 534 494 536 0.92 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF573-204 - 578 3.3e-23 81.5 107.0 16 17 0.0001 0.075 13.2 4.8 6 36 523 560 522 562 0.84 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF573-204 - 578 3.3e-23 81.5 107.0 17 17 0.009 6.7 6.9 0.2 6 16 551 561 550 574 0.83 Zinc ribbon domain zf_UBZ PF18439.1 32 ZNF573-204 - 578 2.3e-14 52.7 83.8 1 19 0.011 8 6.2 0.3 3 17 47 62 45 70 0.76 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF573-204 - 578 2.3e-14 52.7 83.8 2 19 0.0076 5.7 6.6 0.1 3 21 75 94 73 98 0.79 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF573-204 - 578 2.3e-14 52.7 83.8 3 19 0.0074 5.5 6.7 0.1 3 21 103 122 101 126 0.81 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF573-204 - 578 2.3e-14 52.7 83.8 4 19 0.037 27 4.4 0.1 2 12 130 140 129 149 0.88 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF573-204 - 578 2.3e-14 52.7 83.8 5 19 0.037 28 4.4 0.1 3 13 159 169 157 174 0.87 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF573-204 - 578 2.3e-14 52.7 83.8 6 19 0.0012 0.88 9.2 0.1 3 20 187 205 185 209 0.86 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF573-204 - 578 2.3e-14 52.7 83.8 7 19 0.0089 6.6 6.4 0.1 3 12 215 224 213 234 0.80 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF573-204 - 578 2.3e-14 52.7 83.8 8 19 0.11 84 2.9 0.2 3 10 243 250 241 256 0.86 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF573-204 - 578 2.3e-14 52.7 83.8 9 19 0.027 20 4.9 0.2 3 13 271 281 269 290 0.79 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF573-204 - 578 2.3e-14 52.7 83.8 10 19 0.059 44 3.8 0.1 3 13 299 309 297 318 0.79 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF573-204 - 578 2.3e-14 52.7 83.8 11 19 0.014 10 5.8 0.1 3 14 327 338 325 346 0.80 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF573-204 - 578 2.3e-14 52.7 83.8 12 19 0.022 16 5.2 0.3 2 13 354 365 353 374 0.79 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF573-204 - 578 2.3e-14 52.7 83.8 13 19 0.029 22 4.8 0.1 3 14 383 394 381 402 0.77 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF573-204 - 578 2.3e-14 52.7 83.8 14 19 0.00078 0.58 9.8 0.2 3 21 411 430 409 430 0.87 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF573-204 - 578 2.3e-14 52.7 83.8 15 19 3.2 2.4e+03 -1.8 0.4 3 12 439 448 437 450 0.86 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF573-204 - 578 2.3e-14 52.7 83.8 16 19 0.015 11 5.7 0.3 3 17 467 482 465 486 0.76 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF573-204 - 578 2.3e-14 52.7 83.8 17 19 0.01 7.7 6.2 0.1 3 20 495 513 493 514 0.77 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF573-204 - 578 2.3e-14 52.7 83.8 18 19 0.0058 4.3 7.0 0.1 3 20 523 541 521 542 0.82 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF573-204 - 578 2.3e-14 52.7 83.8 19 19 0.0092 6.9 6.4 0.1 3 12 551 560 549 570 0.87 Ubiquitin-Binding Zinc Finger XPA_N PF01286.18 32 ZNF573-204 - 578 1.5e-13 50.6 81.2 1 19 0.029 22 5.2 0.5 3 13 48 58 47 62 0.86 XPA protein N-terminal XPA_N PF01286.18 32 ZNF573-204 - 578 1.5e-13 50.6 81.2 2 19 0.0074 5.6 7.1 0.1 3 13 76 86 74 91 0.84 XPA protein N-terminal XPA_N PF01286.18 32 ZNF573-204 - 578 1.5e-13 50.6 81.2 3 19 0.013 9.4 6.4 0.1 3 13 104 114 102 120 0.83 XPA protein N-terminal XPA_N PF01286.18 32 ZNF573-204 - 578 1.5e-13 50.6 81.2 4 19 0.11 80 3.4 0.1 3 11 132 140 131 143 0.90 XPA protein N-terminal XPA_N PF01286.18 32 ZNF573-204 - 578 1.5e-13 50.6 81.2 5 19 0.022 17 5.6 0.1 3 12 160 169 158 171 0.88 XPA protein N-terminal XPA_N PF01286.18 32 ZNF573-204 - 578 1.5e-13 50.6 81.2 6 19 0.0069 5.2 7.2 0.1 3 12 188 197 186 205 0.87 XPA protein N-terminal XPA_N PF01286.18 32 ZNF573-204 - 578 1.5e-13 50.6 81.2 7 19 0.038 29 4.8 0.1 3 11 216 224 214 226 0.88 XPA protein N-terminal XPA_N PF01286.18 32 ZNF573-204 - 578 1.5e-13 50.6 81.2 8 19 0.081 61 3.8 0.1 3 13 244 254 242 260 0.78 XPA protein N-terminal XPA_N PF01286.18 32 ZNF573-204 - 578 1.5e-13 50.6 81.2 9 19 0.035 27 4.9 0.5 3 12 272 281 270 282 0.89 XPA protein N-terminal XPA_N PF01286.18 32 ZNF573-204 - 578 1.5e-13 50.6 81.2 10 19 0.24 1.8e+02 2.3 0.2 3 18 300 316 299 317 0.73 XPA protein N-terminal XPA_N PF01286.18 32 ZNF573-204 - 578 1.5e-13 50.6 81.2 11 19 0.013 9.3 6.4 0.1 3 12 328 337 326 342 0.90 XPA protein N-terminal XPA_N PF01286.18 32 ZNF573-204 - 578 1.5e-13 50.6 81.2 12 19 0.098 73 3.5 1.5 3 12 356 365 355 366 0.90 XPA protein N-terminal XPA_N PF01286.18 32 ZNF573-204 - 578 1.5e-13 50.6 81.2 13 19 0.12 92 3.2 0.2 3 10 384 391 383 395 0.87 XPA protein N-terminal XPA_N PF01286.18 32 ZNF573-204 - 578 1.5e-13 50.6 81.2 14 19 0.0075 5.6 7.1 0.1 3 12 412 421 410 428 0.88 XPA protein N-terminal XPA_N PF01286.18 32 ZNF573-204 - 578 1.5e-13 50.6 81.2 15 19 0.38 2.8e+02 1.7 0.2 19 27 438 446 436 448 0.74 XPA protein N-terminal XPA_N PF01286.18 32 ZNF573-204 - 578 1.5e-13 50.6 81.2 16 19 0.0034 2.5 8.2 0.1 3 14 468 479 466 484 0.88 XPA protein N-terminal XPA_N PF01286.18 32 ZNF573-204 - 578 1.5e-13 50.6 81.2 17 19 0.0099 7.4 6.7 0.1 3 12 496 505 494 512 0.89 XPA protein N-terminal XPA_N PF01286.18 32 ZNF573-204 - 578 1.5e-13 50.6 81.2 18 19 0.0096 7.2 6.8 0.1 3 12 524 533 522 539 0.89 XPA protein N-terminal XPA_N PF01286.18 32 ZNF573-204 - 578 1.5e-13 50.6 81.2 19 19 0.093 69 3.6 0.0 3 11 552 560 550 562 0.89 XPA protein N-terminal C1_4 PF07975.12 55 ZNF573-204 - 578 9e-09 35.4 92.3 1 18 0.0061 4.5 7.6 1.0 21 48 42 69 27 72 0.74 TFIIH C1-like domain C1_4 PF07975.12 55 ZNF573-204 - 578 9e-09 35.4 92.3 2 18 0.018 13 6.1 4.9 1 48 48 97 48 100 0.79 TFIIH C1-like domain C1_4 PF07975.12 55 ZNF573-204 - 578 9e-09 35.4 92.3 3 18 0.0095 7.1 6.9 1.9 1 48 76 125 76 127 0.85 TFIIH C1-like domain C1_4 PF07975.12 55 ZNF573-204 - 578 9e-09 35.4 92.3 4 18 0.00011 0.083 13.1 2.7 1 49 104 154 104 156 0.92 TFIIH C1-like domain C1_4 PF07975.12 55 ZNF573-204 - 578 9e-09 35.4 92.3 5 18 0.084 63 3.9 0.1 26 49 159 182 156 185 0.90 TFIIH C1-like domain C1_4 PF07975.12 55 ZNF573-204 - 578 9e-09 35.4 92.3 6 18 0.035 26 5.1 2.2 2 48 189 237 188 240 0.82 TFIIH C1-like domain C1_4 PF07975.12 55 ZNF573-204 - 578 9e-09 35.4 92.3 7 18 0.0096 7.2 6.9 1.3 2 48 217 265 216 268 0.81 TFIIH C1-like domain C1_4 PF07975.12 55 ZNF573-204 - 578 9e-09 35.4 92.3 8 18 0.0085 6.3 7.1 0.7 25 49 270 294 261 296 0.85 TFIIH C1-like domain C1_4 PF07975.12 55 ZNF573-204 - 578 9e-09 35.4 92.3 9 18 0.00051 0.38 11.0 3.1 1 49 272 322 272 325 0.86 TFIIH C1-like domain C1_4 PF07975.12 55 ZNF573-204 - 578 9e-09 35.4 92.3 10 18 0.0066 4.9 7.5 2.2 1 48 300 349 300 352 0.76 TFIIH C1-like domain C1_4 PF07975.12 55 ZNF573-204 - 578 9e-09 35.4 92.3 11 18 0.0045 3.4 8.0 4.6 2 49 329 378 328 380 0.74 TFIIH C1-like domain C1_4 PF07975.12 55 ZNF573-204 - 578 9e-09 35.4 92.3 12 18 0.0093 6.9 7.0 3.5 1 44 356 401 356 406 0.75 TFIIH C1-like domain C1_4 PF07975.12 55 ZNF573-204 - 578 9e-09 35.4 92.3 13 18 0.0039 2.9 8.2 2.4 2 49 385 434 384 437 0.81 TFIIH C1-like domain C1_4 PF07975.12 55 ZNF573-204 - 578 9e-09 35.4 92.3 14 18 0.014 10 6.5 4.3 2 49 413 462 412 464 0.77 TFIIH C1-like domain C1_4 PF07975.12 55 ZNF573-204 - 578 9e-09 35.4 92.3 15 18 0.041 30 4.9 4.2 1 48 440 489 440 492 0.84 TFIIH C1-like domain C1_4 PF07975.12 55 ZNF573-204 - 578 9e-09 35.4 92.3 16 18 0.016 12 6.2 3.4 1 48 468 517 468 519 0.78 TFIIH C1-like domain C1_4 PF07975.12 55 ZNF573-204 - 578 9e-09 35.4 92.3 17 18 0.0028 2.1 8.6 1.6 2 49 497 546 496 548 0.80 TFIIH C1-like domain C1_4 PF07975.12 55 ZNF573-204 - 578 9e-09 35.4 92.3 18 18 0.011 8.5 6.7 1.3 1 48 524 573 524 576 0.79 TFIIH C1-like domain zinc_ribbon_15 PF17032.5 86 ZNF573-204 - 578 1.6e-08 35.2 80.5 1 13 0.077 57 4.6 6.3 31 79 40 88 16 117 0.79 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF573-204 - 578 1.6e-08 35.2 80.5 2 13 0.0084 6.3 7.6 1.5 34 74 99 139 93 145 0.84 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF573-204 - 578 1.6e-08 35.2 80.5 3 13 0.0095 7.1 7.5 0.9 32 76 125 169 122 174 0.80 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF573-204 - 578 1.6e-08 35.2 80.5 4 13 0.0039 2.9 8.7 1.0 34 77 155 198 142 202 0.82 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF573-204 - 578 1.6e-08 35.2 80.5 5 13 0.00044 0.33 11.7 1.5 32 75 181 224 175 233 0.88 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF573-204 - 578 1.6e-08 35.2 80.5 6 13 0.0022 1.7 9.5 0.8 33 76 210 253 202 261 0.83 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF573-204 - 578 1.6e-08 35.2 80.5 7 13 0.061 46 4.9 1.9 31 75 236 280 228 286 0.80 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF573-204 - 578 1.6e-08 35.2 80.5 8 13 0.0018 1.4 9.8 2.0 24 76 257 309 250 313 0.83 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF573-204 - 578 1.6e-08 35.2 80.5 9 13 0.016 12 6.8 7.9 31 74 292 335 272 339 0.86 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF573-204 - 578 1.6e-08 35.2 80.5 10 13 0.0089 6.6 7.6 2.8 30 76 347 393 341 397 0.85 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF573-204 - 578 1.6e-08 35.2 80.5 11 13 0.0033 2.4 8.9 1.9 30 75 403 448 397 454 0.85 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF573-204 - 578 1.6e-08 35.2 80.5 12 13 0.0017 1.3 9.8 2.5 32 75 461 504 454 507 0.87 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF573-204 - 578 1.6e-08 35.2 80.5 13 13 0.0022 1.7 9.5 1.3 33 75 518 560 509 565 0.84 zinc-ribbon family zf-C2H2_11 PF16622.5 29 ZNF573-204 - 578 2.2e-08 33.7 86.5 1 19 0.2 1.5e+02 2.3 1.4 7 20 49 62 47 69 0.79 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF573-204 - 578 2.2e-08 33.7 86.5 2 19 0.044 33 4.4 0.2 6 23 76 93 74 96 0.80 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF573-204 - 578 2.2e-08 33.7 86.5 3 19 0.015 12 5.8 0.1 6 23 104 121 101 124 0.81 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF573-204 - 578 2.2e-08 33.7 86.5 4 19 0.026 19 5.1 0.1 3 14 129 140 128 147 0.75 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF573-204 - 578 2.2e-08 33.7 86.5 5 19 0.0018 1.3 8.8 0.4 6 25 160 179 158 181 0.86 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF573-204 - 578 2.2e-08 33.7 86.5 6 19 0.045 34 4.3 0.1 5 15 187 197 184 206 0.83 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF573-204 - 578 2.2e-08 33.7 86.5 7 19 4.3 3.2e+03 -2.0 0.2 7 14 217 224 212 224 0.85 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF573-204 - 578 2.2e-08 33.7 86.5 8 19 0.18 1.3e+02 2.4 0.1 6 16 244 254 242 264 0.87 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF573-204 - 578 2.2e-08 33.7 86.5 9 19 0.006 4.5 7.1 0.1 6 26 272 292 270 293 0.90 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF573-204 - 578 2.2e-08 33.7 86.5 10 19 0.12 92 2.9 0.6 7 16 301 310 299 318 0.78 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF573-204 - 578 2.2e-08 33.7 86.5 11 19 0.0032 2.4 8.0 0.1 6 26 328 348 325 349 0.91 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF573-204 - 578 2.2e-08 33.7 86.5 12 19 0.0073 5.5 6.8 0.3 7 26 357 376 355 377 0.90 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF573-204 - 578 2.2e-08 33.7 86.5 13 19 0.025 19 5.1 0.1 7 24 385 402 383 404 0.84 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF573-204 - 578 2.2e-08 33.7 86.5 14 19 0.00011 0.081 12.7 0.2 5 26 411 432 408 433 0.92 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF573-204 - 578 2.2e-08 33.7 86.5 15 19 5.6 4.1e+03 -2.4 0.2 9 13 440 444 439 449 0.80 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF573-204 - 578 2.2e-08 33.7 86.5 16 19 0.43 3.2e+02 1.2 0.1 5 14 467 476 463 488 0.76 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF573-204 - 578 2.2e-08 33.7 86.5 17 19 0.13 1e+02 2.8 0.0 6 26 496 516 491 517 0.81 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF573-204 - 578 2.2e-08 33.7 86.5 18 19 0.029 21 4.9 0.0 6 26 524 544 522 545 0.88 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF573-204 - 578 2.2e-08 33.7 86.5 19 19 0.27 2e+02 1.8 0.5 7 26 553 572 551 573 0.86 zinc-finger C2H2-type DUF3850 PF12961.7 77 ZNF573-204 - 578 1.6e-07 31.2 4.4 1 9 0.023 18 5.5 0.0 2 39 28 65 27 84 0.90 Domain of unknown function (DUF3850) DUF3850 PF12961.7 77 ZNF573-204 - 578 1.6e-07 31.2 4.4 2 9 0.27 2e+02 2.1 0.0 15 59 97 142 90 147 0.72 Domain of unknown function (DUF3850) DUF3850 PF12961.7 77 ZNF573-204 - 578 1.6e-07 31.2 4.4 3 9 0.037 27 4.9 0.0 11 40 149 178 144 195 0.84 Domain of unknown function (DUF3850) DUF3850 PF12961.7 77 ZNF573-204 - 578 1.6e-07 31.2 4.4 4 9 0.52 3.9e+02 1.2 0.0 12 39 234 261 229 285 0.72 Domain of unknown function (DUF3850) DUF3850 PF12961.7 77 ZNF573-204 - 578 1.6e-07 31.2 4.4 5 9 0.099 74 3.5 0.0 12 36 290 314 281 332 0.82 Domain of unknown function (DUF3850) DUF3850 PF12961.7 77 ZNF573-204 - 578 1.6e-07 31.2 4.4 6 9 0.96 7.2e+02 0.3 0.0 10 26 344 360 340 366 0.79 Domain of unknown function (DUF3850) DUF3850 PF12961.7 77 ZNF573-204 - 578 1.6e-07 31.2 4.4 7 9 0.065 49 4.1 0.0 12 37 374 399 363 416 0.82 Domain of unknown function (DUF3850) DUF3850 PF12961.7 77 ZNF573-204 - 578 1.6e-07 31.2 4.4 8 9 5.2 3.9e+03 -2.0 0.0 12 33 458 479 455 500 0.77 Domain of unknown function (DUF3850) DUF3850 PF12961.7 77 ZNF573-204 - 578 1.6e-07 31.2 4.4 9 9 7.1 5.3e+03 -2.5 0.0 13 31 515 533 511 562 0.65 Domain of unknown function (DUF3850) # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF573-204.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF573-204.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF573-204.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF573-204.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF573-204.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:09:38 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF573-205.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF573-205.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF573-205.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF573-205.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF573-205.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:09:39 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- KRAB PF01352.27 42 ZNF573-206 - 104 2.5e-26 91.0 0.7 1 1 2.3e-30 4.1e-26 90.3 0.7 1 41 27 67 27 68 0.97 KRAB box # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF573-206.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF573-206.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF573-206.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF573-206.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF573-206.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:09:39 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF573-207.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF573-207.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF573-207.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF573-207.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF573-207.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:09:39 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZNF573-208 - 665 5.2e-132 425.0 158.8 1 20 0.0018 1.4 9.4 2.9 12 26 131 145 129 145 0.89 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF573-208 - 665 5.2e-132 425.0 158.8 2 20 4.2e-06 0.0034 17.7 1.1 5 25 152 172 148 173 0.89 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF573-208 - 665 5.2e-132 425.0 158.8 3 20 8.4e-11 6.9e-08 32.6 1.0 2 25 177 200 176 201 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF573-208 - 665 5.2e-132 425.0 158.8 4 20 1.6e-09 1.3e-06 28.5 0.6 2 24 205 227 204 229 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF573-208 - 665 5.2e-132 425.0 158.8 5 20 7.1e-09 5.8e-06 26.5 0.3 3 25 234 256 232 257 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF573-208 - 665 5.2e-132 425.0 158.8 6 20 1.6e-11 1.3e-08 34.9 2.9 1 25 260 284 260 285 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF573-208 - 665 5.2e-132 425.0 158.8 7 20 3.2e-06 0.0026 18.1 0.4 1 25 288 312 288 313 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF573-208 - 665 5.2e-132 425.0 158.8 8 20 9.9e-11 8.1e-08 32.4 1.0 2 26 317 341 316 341 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF573-208 - 665 5.2e-132 425.0 158.8 9 20 3.9e-08 3.2e-05 24.2 2.6 5 25 348 368 345 368 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF573-208 - 665 5.2e-132 425.0 158.8 10 20 2.1e-10 1.7e-07 31.3 0.8 1 26 372 397 372 397 0.97 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF573-208 - 665 5.2e-132 425.0 158.8 11 20 1.1e-10 8.8e-08 32.2 2.3 2 25 401 424 400 424 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF573-208 - 665 5.2e-132 425.0 158.8 12 20 8.6e-08 7e-05 23.1 5.3 2 25 429 452 428 452 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF573-208 - 665 5.2e-132 425.0 158.8 13 20 8e-10 6.5e-07 29.5 0.4 1 26 456 481 456 481 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF573-208 - 665 5.2e-132 425.0 158.8 14 20 4e-11 3.3e-08 33.6 1.9 1 25 484 508 484 508 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF573-208 - 665 5.2e-132 425.0 158.8 15 20 1e-10 8.4e-08 32.3 1.7 2 25 513 536 512 536 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF573-208 - 665 5.2e-132 425.0 158.8 16 20 2.2e-09 1.8e-06 28.1 0.8 1 25 540 564 540 565 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF573-208 - 665 5.2e-132 425.0 158.8 17 20 7.6e-08 6.2e-05 23.2 1.8 1 25 568 592 568 592 0.97 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF573-208 - 665 5.2e-132 425.0 158.8 18 20 1.4e-10 1.1e-07 31.9 0.8 2 25 597 620 596 621 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF573-208 - 665 5.2e-132 425.0 158.8 19 20 1.9e-11 1.5e-08 34.6 0.6 1 25 624 648 624 649 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF573-208 - 665 5.2e-132 425.0 158.8 20 20 0.61 5e+02 1.4 0.2 1 11 652 662 652 664 0.86 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZNF573-208 - 665 1.4e-93 302.4 147.8 1 19 9.4e-05 0.077 13.5 4.3 1 23 134 156 134 156 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF573-208 - 665 1.4e-93 302.4 147.8 2 19 8.6e-07 0.0007 19.9 1.4 1 23 162 184 162 184 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF573-208 - 665 1.4e-93 302.4 147.8 3 19 3.1e-07 0.00025 21.3 1.0 1 23 190 212 190 212 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF573-208 - 665 1.4e-93 302.4 147.8 4 19 5.4e-06 0.0044 17.4 0.4 1 23 218 240 218 240 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF573-208 - 665 1.4e-93 302.4 147.8 5 19 1.6e-07 0.00013 22.2 0.3 1 23 246 268 246 268 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF573-208 - 665 1.4e-93 302.4 147.8 6 19 2.8e-08 2.3e-05 24.6 1.3 1 23 274 296 274 296 0.93 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF573-208 - 665 1.4e-93 302.4 147.8 7 19 1.2e-07 9.6e-05 22.6 1.1 1 23 302 324 302 324 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF573-208 - 665 1.4e-93 302.4 147.8 8 19 6.7e-07 0.00055 20.2 0.5 1 23 330 352 330 352 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF573-208 - 665 1.4e-93 302.4 147.8 9 19 1.1e-06 0.00091 19.6 2.3 1 23 358 380 358 380 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF573-208 - 665 1.4e-93 302.4 147.8 10 19 1.4e-06 0.0011 19.2 2.1 1 23 386 408 386 408 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF573-208 - 665 1.4e-93 302.4 147.8 11 19 1.2e-06 0.001 19.4 0.5 1 23 414 436 414 436 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF573-208 - 665 1.4e-93 302.4 147.8 12 19 1.6e-06 0.0013 19.0 2.3 1 23 442 464 442 464 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF573-208 - 665 1.4e-93 302.4 147.8 13 19 2.8e-07 0.00023 21.4 0.3 1 23 470 492 470 492 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF573-208 - 665 1.4e-93 302.4 147.8 14 19 1.1e-06 0.00093 19.5 2.6 1 23 498 520 498 520 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF573-208 - 665 1.4e-93 302.4 147.8 15 19 7e-06 0.0057 17.1 2.4 1 23 526 548 526 548 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF573-208 - 665 1.4e-93 302.4 147.8 16 19 2.7e-09 2.2e-06 27.8 2.2 1 23 554 576 554 576 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF573-208 - 665 1.4e-93 302.4 147.8 17 19 3.9e-07 0.00032 21.0 0.6 1 23 582 604 582 604 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF573-208 - 665 1.4e-93 302.4 147.8 18 19 3.1e-09 2.6e-06 27.6 0.1 1 23 610 632 610 632 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF573-208 - 665 1.4e-93 302.4 147.8 19 19 5.4e-08 4.4e-05 23.7 0.5 1 23 638 660 638 660 0.99 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZNF573-208 - 665 2.1e-55 180.5 138.6 1 19 0.00064 0.52 11.3 3.0 1 23 134 156 134 157 0.84 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF573-208 - 665 2.1e-55 180.5 138.6 2 19 7.6e-05 0.062 14.2 1.0 1 23 162 184 162 185 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF573-208 - 665 2.1e-55 180.5 138.6 3 19 1.3e-05 0.01 16.6 0.8 1 23 190 212 190 213 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF573-208 - 665 2.1e-55 180.5 138.6 4 19 0.00079 0.65 11.0 0.4 1 23 218 240 218 241 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF573-208 - 665 2.1e-55 180.5 138.6 5 19 0.0001 0.084 13.8 0.4 1 23 246 268 246 269 0.91 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF573-208 - 665 2.1e-55 180.5 138.6 6 19 0.00016 0.13 13.2 1.0 1 19 274 292 274 296 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF573-208 - 665 2.1e-55 180.5 138.6 7 19 0.00017 0.14 13.1 0.9 1 23 302 324 302 325 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF573-208 - 665 2.1e-55 180.5 138.6 8 19 0.00047 0.38 11.7 0.5 1 23 330 352 330 353 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF573-208 - 665 2.1e-55 180.5 138.6 9 19 0.00011 0.087 13.7 1.2 1 23 358 380 358 381 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF573-208 - 665 2.1e-55 180.5 138.6 10 19 2.3e-06 0.0019 18.9 1.5 1 23 386 408 386 409 0.97 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF573-208 - 665 2.1e-55 180.5 138.6 11 19 2.4e-05 0.02 15.7 0.6 1 23 414 436 414 437 0.89 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF573-208 - 665 2.1e-55 180.5 138.6 12 19 0.00011 0.092 13.6 1.4 1 23 442 464 442 465 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF573-208 - 665 2.1e-55 180.5 138.6 13 19 8.8e-06 0.0072 17.1 0.3 1 23 470 492 470 493 0.97 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF573-208 - 665 2.1e-55 180.5 138.6 14 19 2.1e-05 0.017 15.9 1.9 1 23 498 520 498 521 0.87 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF573-208 - 665 2.1e-55 180.5 138.6 15 19 0.0015 1.2 10.2 1.5 1 23 526 548 526 549 0.89 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF573-208 - 665 2.1e-55 180.5 138.6 16 19 2.1e-05 0.017 15.9 1.4 1 23 554 576 554 577 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF573-208 - 665 2.1e-55 180.5 138.6 17 19 8e-05 0.065 14.1 0.5 1 23 582 604 582 605 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF573-208 - 665 2.1e-55 180.5 138.6 18 19 1.6e-05 0.013 16.3 0.2 1 23 610 632 610 633 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF573-208 - 665 2.1e-55 180.5 138.6 19 19 9.2e-06 0.0075 17.0 0.5 1 23 638 660 638 661 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF573-208 - 665 5.4e-53 176.1 145.5 1 20 0.21 1.7e+02 2.4 0.0 14 23 64 73 59 75 0.80 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF573-208 - 665 5.4e-53 176.1 145.5 2 20 0.00041 0.34 11.0 4.1 2 21 134 153 133 156 0.89 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF573-208 - 665 5.4e-53 176.1 145.5 3 20 4e-06 0.0033 17.4 2.0 2 22 162 182 162 186 0.90 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF573-208 - 665 5.4e-53 176.1 145.5 4 20 2.6e-06 0.0022 18.0 1.4 2 22 190 210 190 214 0.90 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF573-208 - 665 5.4e-53 176.1 145.5 5 20 0.017 14 5.9 0.3 2 11 218 227 217 229 0.92 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF573-208 - 665 5.4e-53 176.1 145.5 6 20 0.0011 0.9 9.6 0.6 2 20 246 264 246 269 0.78 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF573-208 - 665 5.4e-53 176.1 145.5 7 20 7.1e-05 0.058 13.4 0.6 2 20 274 292 274 292 0.83 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF573-208 - 665 5.4e-53 176.1 145.5 8 20 0.005 4 7.5 0.8 2 22 302 322 302 326 0.87 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF573-208 - 665 5.4e-53 176.1 145.5 9 20 0.0027 2.2 8.4 0.3 2 13 330 341 330 342 0.90 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF573-208 - 665 5.4e-53 176.1 145.5 10 20 1.6e-05 0.013 15.5 0.9 2 20 358 376 358 380 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF573-208 - 665 5.4e-53 176.1 145.5 11 20 2.3e-06 0.0019 18.2 2.9 2 24 386 408 385 411 0.95 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF573-208 - 665 5.4e-53 176.1 145.5 12 20 0.00064 0.53 10.4 1.0 2 12 414 424 414 436 0.86 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF573-208 - 665 5.4e-53 176.1 145.5 13 20 1e-05 0.0083 16.1 1.7 1 20 441 460 441 464 0.92 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF573-208 - 665 5.4e-53 176.1 145.5 14 20 3.8e-09 3.1e-06 27.0 0.6 2 24 470 492 469 495 0.95 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF573-208 - 665 5.4e-53 176.1 145.5 15 20 0.00047 0.38 10.8 1.1 2 12 498 508 498 509 0.95 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF573-208 - 665 5.4e-53 176.1 145.5 16 20 0.00019 0.16 12.0 0.7 2 21 526 545 526 551 0.86 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF573-208 - 665 5.4e-53 176.1 145.5 17 20 7.9e-05 0.064 13.3 1.0 2 20 554 572 554 578 0.82 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF573-208 - 665 5.4e-53 176.1 145.5 18 20 4.5e-05 0.036 14.1 1.9 2 22 582 602 582 605 0.87 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF573-208 - 665 5.4e-53 176.1 145.5 19 20 0.0001 0.085 12.9 0.3 2 20 610 628 610 634 0.83 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF573-208 - 665 5.4e-53 176.1 145.5 20 20 5.7e-08 4.6e-05 23.3 0.8 2 26 638 662 638 663 0.96 C2H2-type zinc finger KRAB PF01352.27 42 ZNF573-208 - 665 5.8e-26 89.9 0.2 1 1 1.5e-28 1.2e-25 88.9 0.2 1 42 27 68 27 68 0.99 KRAB box zf-C2H2_jaz PF12171.8 27 ZNF573-208 - 665 3.9e-25 87.5 89.1 1 19 0.029 24 5.4 0.8 2 20 134 152 133 152 0.89 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF573-208 - 665 3.9e-25 87.5 89.1 2 19 0.00034 0.27 11.5 0.1 2 22 162 182 161 182 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF573-208 - 665 3.9e-25 87.5 89.1 3 19 0.00046 0.37 11.1 0.0 2 22 190 210 189 210 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF573-208 - 665 3.9e-25 87.5 89.1 4 19 0.84 6.9e+02 0.7 0.4 2 22 218 238 217 238 0.86 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF573-208 - 665 3.9e-25 87.5 89.1 5 19 0.26 2.1e+02 2.4 0.0 2 12 246 256 245 265 0.90 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF573-208 - 665 3.9e-25 87.5 89.1 6 19 0.00027 0.22 11.8 0.1 2 20 274 292 273 292 0.95 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF573-208 - 665 3.9e-25 87.5 89.1 7 19 0.22 1.8e+02 2.6 0.0 2 22 302 322 301 322 0.91 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF573-208 - 665 3.9e-25 87.5 89.1 8 19 0.0025 2 8.8 0.0 2 22 330 350 329 350 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF573-208 - 665 3.9e-25 87.5 89.1 9 19 0.0098 8 6.9 0.3 2 11 358 367 357 378 0.88 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF573-208 - 665 3.9e-25 87.5 89.1 10 19 0.051 42 4.6 1.3 2 24 386 408 385 408 0.90 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF573-208 - 665 3.9e-25 87.5 89.1 11 19 0.13 1.1e+02 3.3 0.5 2 12 414 424 413 434 0.86 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF573-208 - 665 3.9e-25 87.5 89.1 12 19 0.0068 5.5 7.4 0.6 2 11 442 451 441 462 0.89 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF573-208 - 665 3.9e-25 87.5 89.1 13 19 0.00035 0.28 11.5 0.3 2 24 470 492 469 492 0.95 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF573-208 - 665 3.9e-25 87.5 89.1 14 19 0.0069 5.6 7.4 0.7 2 22 498 518 497 518 0.85 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF573-208 - 665 3.9e-25 87.5 89.1 15 19 0.013 11 6.5 0.5 2 11 526 535 525 536 0.91 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF573-208 - 665 3.9e-25 87.5 89.1 16 19 6.4e-05 0.052 13.9 0.1 2 21 554 573 553 574 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF573-208 - 665 3.9e-25 87.5 89.1 17 19 0.026 21 5.5 0.5 2 21 582 601 581 602 0.78 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF573-208 - 665 3.9e-25 87.5 89.1 18 19 3.1e-05 0.025 14.9 0.0 2 22 610 630 609 630 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF573-208 - 665 3.9e-25 87.5 89.1 19 19 0.017 14 6.1 0.0 2 22 638 658 637 658 0.90 Zinc-finger double-stranded RNA-binding Zn-ribbon_8 PF09723.10 40 ZNF573-208 - 665 8.8e-23 80.1 105.4 1 16 0.00077 0.63 10.2 5.2 6 37 134 172 133 173 0.80 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF573-208 - 665 8.8e-23 80.1 105.4 2 16 0.00013 0.1 12.7 5.9 6 36 162 199 161 200 0.90 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF573-208 - 665 8.8e-23 80.1 105.4 3 16 3e-05 0.025 14.7 4.1 6 34 190 225 189 228 0.94 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF573-208 - 665 8.8e-23 80.1 105.4 4 16 6.3e-06 0.0052 16.9 4.3 6 38 246 285 245 287 0.91 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF573-208 - 665 8.8e-23 80.1 105.4 5 16 4.9e-06 0.004 17.2 3.5 6 38 274 313 273 313 0.83 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF573-208 - 665 8.8e-23 80.1 105.4 6 16 4.4e-05 0.036 14.2 2.6 6 34 302 337 301 343 0.92 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF573-208 - 665 8.8e-23 80.1 105.4 7 16 0.00041 0.33 11.1 4.3 6 35 358 394 357 397 0.84 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF573-208 - 665 8.8e-23 80.1 105.4 8 16 0.00071 0.58 10.3 5.6 6 34 386 421 384 426 0.90 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF573-208 - 665 8.8e-23 80.1 105.4 9 16 0.0097 7.9 6.7 0.8 6 16 414 424 413 436 0.84 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF573-208 - 665 8.8e-23 80.1 105.4 10 16 0.001 0.84 9.8 3.4 6 34 442 477 440 482 0.85 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF573-208 - 665 8.8e-23 80.1 105.4 11 16 0.0057 4.6 7.4 5.7 6 34 470 505 469 507 0.82 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF573-208 - 665 8.8e-23 80.1 105.4 12 16 0.00038 0.31 11.2 4.1 6 34 498 533 497 535 0.91 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF573-208 - 665 8.8e-23 80.1 105.4 13 16 1.4e-05 0.012 15.7 3.4 6 38 526 565 525 567 0.88 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF573-208 - 665 8.8e-23 80.1 105.4 14 16 7.7e-06 0.0063 16.6 3.7 6 38 582 621 581 623 0.92 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF573-208 - 665 8.8e-23 80.1 105.4 15 16 0.00011 0.086 13.0 4.7 6 36 610 647 609 649 0.84 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF573-208 - 665 8.8e-23 80.1 105.4 16 16 0.0096 7.8 6.7 0.2 6 16 638 648 637 661 0.83 Zinc ribbon domain zf_UBZ PF18439.1 32 ZNF573-208 - 665 3.5e-13 48.9 83.6 1 19 0.012 9.4 5.9 0.3 3 17 134 149 132 157 0.76 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF573-208 - 665 3.5e-13 48.9 83.6 2 19 0.0082 6.7 6.4 0.1 3 21 162 181 160 185 0.79 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF573-208 - 665 3.5e-13 48.9 83.6 3 19 0.008 6.5 6.4 0.1 3 21 190 209 188 213 0.81 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF573-208 - 665 3.5e-13 48.9 83.6 4 19 0.039 32 4.2 0.1 2 12 217 227 216 236 0.88 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF573-208 - 665 3.5e-13 48.9 83.6 5 19 0.04 32 4.2 0.1 3 13 246 256 244 261 0.87 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF573-208 - 665 3.5e-13 48.9 83.6 6 19 0.0013 1 9.0 0.1 3 20 274 292 272 296 0.86 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF573-208 - 665 3.5e-13 48.9 83.6 7 19 0.0095 7.8 6.2 0.1 3 12 302 311 300 321 0.80 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF573-208 - 665 3.5e-13 48.9 83.6 8 19 0.12 98 2.7 0.2 3 10 330 337 328 343 0.86 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF573-208 - 665 3.5e-13 48.9 83.6 9 19 0.029 23 4.7 0.2 3 13 358 368 356 377 0.79 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF573-208 - 665 3.5e-13 48.9 83.6 10 19 0.064 52 3.6 0.1 3 13 386 396 384 405 0.79 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF573-208 - 665 3.5e-13 48.9 83.6 11 19 0.015 12 5.6 0.1 3 14 414 425 412 433 0.80 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF573-208 - 665 3.5e-13 48.9 83.6 12 19 0.023 19 4.9 0.3 2 13 441 452 440 461 0.79 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF573-208 - 665 3.5e-13 48.9 83.6 13 19 0.031 25 4.5 0.1 3 14 470 481 468 489 0.77 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF573-208 - 665 3.5e-13 48.9 83.6 14 19 0.00084 0.68 9.6 0.2 3 21 498 517 496 517 0.87 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF573-208 - 665 3.5e-13 48.9 83.6 15 19 4.1 3.3e+03 -2.2 0.3 3 12 526 535 525 537 0.87 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF573-208 - 665 3.5e-13 48.9 83.6 16 19 0.016 13 5.5 0.3 3 17 554 569 552 573 0.76 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF573-208 - 665 3.5e-13 48.9 83.6 17 19 0.011 9 6.0 0.1 3 20 582 600 580 601 0.77 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF573-208 - 665 3.5e-13 48.9 83.6 18 19 0.0062 5.1 6.8 0.1 3 20 610 628 608 629 0.82 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF573-208 - 665 3.5e-13 48.9 83.6 19 19 0.0099 8 6.1 0.1 3 12 638 647 636 657 0.87 Ubiquitin-Binding Zinc Finger XPA_N PF01286.18 32 ZNF573-208 - 665 2.5e-12 46.6 81.2 1 19 0.031 26 5.0 0.5 3 13 135 145 134 149 0.86 XPA protein N-terminal XPA_N PF01286.18 32 ZNF573-208 - 665 2.5e-12 46.6 81.2 2 19 0.008 6.5 6.9 0.1 3 13 163 173 161 178 0.84 XPA protein N-terminal XPA_N PF01286.18 32 ZNF573-208 - 665 2.5e-12 46.6 81.2 3 19 0.013 11 6.2 0.1 3 13 191 201 189 207 0.83 XPA protein N-terminal XPA_N PF01286.18 32 ZNF573-208 - 665 2.5e-12 46.6 81.2 4 19 0.11 93 3.2 0.1 3 11 219 227 218 230 0.90 XPA protein N-terminal XPA_N PF01286.18 32 ZNF573-208 - 665 2.5e-12 46.6 81.2 5 19 0.024 20 5.4 0.1 3 12 247 256 245 258 0.88 XPA protein N-terminal XPA_N PF01286.18 32 ZNF573-208 - 665 2.5e-12 46.6 81.2 6 19 0.0074 6 7.0 0.1 3 12 275 284 273 292 0.87 XPA protein N-terminal XPA_N PF01286.18 32 ZNF573-208 - 665 2.5e-12 46.6 81.2 7 19 0.041 33 4.6 0.1 3 11 303 311 301 313 0.88 XPA protein N-terminal XPA_N PF01286.18 32 ZNF573-208 - 665 2.5e-12 46.6 81.2 8 19 0.087 71 3.6 0.1 3 13 331 341 329 347 0.78 XPA protein N-terminal XPA_N PF01286.18 32 ZNF573-208 - 665 2.5e-12 46.6 81.2 9 19 0.038 31 4.7 0.5 3 12 359 368 357 369 0.89 XPA protein N-terminal XPA_N PF01286.18 32 ZNF573-208 - 665 2.5e-12 46.6 81.2 10 19 0.26 2.1e+02 2.1 0.2 3 18 387 403 386 404 0.73 XPA protein N-terminal XPA_N PF01286.18 32 ZNF573-208 - 665 2.5e-12 46.6 81.2 11 19 0.013 11 6.2 0.1 3 12 415 424 413 429 0.90 XPA protein N-terminal XPA_N PF01286.18 32 ZNF573-208 - 665 2.5e-12 46.6 81.2 12 19 0.1 85 3.3 1.5 3 12 443 452 442 453 0.90 XPA protein N-terminal XPA_N PF01286.18 32 ZNF573-208 - 665 2.5e-12 46.6 81.2 13 19 0.13 1.1e+02 3.0 0.2 3 10 471 478 470 482 0.87 XPA protein N-terminal XPA_N PF01286.18 32 ZNF573-208 - 665 2.5e-12 46.6 81.2 14 19 0.0081 6.6 6.9 0.1 3 12 499 508 497 515 0.88 XPA protein N-terminal XPA_N PF01286.18 32 ZNF573-208 - 665 2.5e-12 46.6 81.2 15 19 0.4 3.3e+02 1.4 0.2 19 27 525 533 523 535 0.74 XPA protein N-terminal XPA_N PF01286.18 32 ZNF573-208 - 665 2.5e-12 46.6 81.2 16 19 0.0036 3 8.0 0.1 3 14 555 566 553 571 0.88 XPA protein N-terminal XPA_N PF01286.18 32 ZNF573-208 - 665 2.5e-12 46.6 81.2 17 19 0.011 8.6 6.5 0.1 3 12 583 592 581 599 0.89 XPA protein N-terminal XPA_N PF01286.18 32 ZNF573-208 - 665 2.5e-12 46.6 81.2 18 19 0.01 8.4 6.5 0.1 3 12 611 620 609 626 0.89 XPA protein N-terminal XPA_N PF01286.18 32 ZNF573-208 - 665 2.5e-12 46.6 81.2 19 19 0.099 81 3.4 0.0 3 11 639 647 637 649 0.89 XPA protein N-terminal C1_4 PF07975.12 55 ZNF573-208 - 665 3.4e-08 33.6 91.0 1 16 0.0064 5.2 7.4 0.9 21 48 129 156 114 159 0.74 TFIIH C1-like domain C1_4 PF07975.12 55 ZNF573-208 - 665 3.4e-08 33.6 91.0 2 16 0.017 14 6.0 4.7 1 48 135 184 135 187 0.79 TFIIH C1-like domain C1_4 PF07975.12 55 ZNF573-208 - 665 3.4e-08 33.6 91.0 3 16 0.0001 0.084 13.1 2.5 1 49 191 241 191 243 0.92 TFIIH C1-like domain C1_4 PF07975.12 55 ZNF573-208 - 665 3.4e-08 33.6 91.0 4 16 0.037 30 4.9 1.6 1 36 247 284 247 299 0.75 TFIIH C1-like domain C1_4 PF07975.12 55 ZNF573-208 - 665 3.4e-08 33.6 91.0 5 16 0.035 29 5.0 2.1 2 48 276 324 275 327 0.81 TFIIH C1-like domain C1_4 PF07975.12 55 ZNF573-208 - 665 3.4e-08 33.6 91.0 6 16 0.01 8.3 6.7 1.2 2 48 304 352 303 355 0.81 TFIIH C1-like domain C1_4 PF07975.12 55 ZNF573-208 - 665 3.4e-08 33.6 91.0 7 16 0.00058 0.47 10.7 3.1 1 49 359 409 359 412 0.86 TFIIH C1-like domain C1_4 PF07975.12 55 ZNF573-208 - 665 3.4e-08 33.6 91.0 8 16 0.0074 6 7.2 2.3 1 48 387 436 387 440 0.77 TFIIH C1-like domain C1_4 PF07975.12 55 ZNF573-208 - 665 3.4e-08 33.6 91.0 9 16 0.0051 4.2 7.7 4.7 2 49 416 465 415 467 0.74 TFIIH C1-like domain C1_4 PF07975.12 55 ZNF573-208 - 665 3.4e-08 33.6 91.0 10 16 0.0063 5.1 7.4 3.0 1 45 443 489 443 494 0.76 TFIIH C1-like domain C1_4 PF07975.12 55 ZNF573-208 - 665 3.4e-08 33.6 91.0 11 16 0.0042 3.4 8.0 2.4 2 49 472 521 471 524 0.81 TFIIH C1-like domain C1_4 PF07975.12 55 ZNF573-208 - 665 3.4e-08 33.6 91.0 12 16 0.017 14 6.0 4.3 2 49 500 549 499 550 0.76 TFIIH C1-like domain C1_4 PF07975.12 55 ZNF573-208 - 665 3.4e-08 33.6 91.0 13 16 0.04 33 4.8 3.9 1 48 527 576 527 577 0.83 TFIIH C1-like domain C1_4 PF07975.12 55 ZNF573-208 - 665 3.4e-08 33.6 91.0 14 16 0.012 9.4 6.6 2.9 1 48 555 604 555 607 0.79 TFIIH C1-like domain C1_4 PF07975.12 55 ZNF573-208 - 665 3.4e-08 33.6 91.0 15 16 0.0032 2.6 8.3 1.7 2 49 584 633 583 636 0.81 TFIIH C1-like domain C1_4 PF07975.12 55 ZNF573-208 - 665 3.4e-08 33.6 91.0 16 16 0.012 9.5 6.5 1.2 1 48 611 660 611 663 0.79 TFIIH C1-like domain zinc_ribbon_15 PF17032.5 86 ZNF573-208 - 665 1.1e-07 32.5 80.9 1 12 0.0056 4.6 8.1 2.2 30 79 126 175 103 179 0.81 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF573-208 - 665 1.1e-07 32.5 80.9 2 12 0.035 29 5.5 4.3 39 74 191 226 181 260 0.57 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF573-208 - 665 1.1e-07 32.5 80.9 3 12 0.0046 3.8 8.3 1.0 35 77 243 285 232 289 0.82 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF573-208 - 665 1.1e-07 32.5 80.9 4 12 0.00054 0.44 11.3 1.6 32 75 268 311 264 317 0.87 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF573-208 - 665 1.1e-07 32.5 80.9 5 12 0.071 58 4.5 5.4 35 76 299 340 294 372 0.79 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF573-208 - 665 1.1e-07 32.5 80.9 6 12 0.018 15 6.4 5.6 24 77 344 397 332 404 0.82 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF573-208 - 665 1.1e-07 32.5 80.9 7 12 0.00052 0.42 11.4 2.4 32 74 380 422 377 426 0.89 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF573-208 - 665 1.1e-07 32.5 80.9 8 12 0.0086 7 7.5 2.8 30 76 434 480 427 488 0.86 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF573-208 - 665 1.1e-07 32.5 80.9 9 12 0.00022 0.18 12.6 1.9 31 75 463 507 459 512 0.90 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF573-208 - 665 1.1e-07 32.5 80.9 10 12 0.0038 3.1 8.6 2.0 30 75 490 535 484 541 0.85 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF573-208 - 665 1.1e-07 32.5 80.9 11 12 0.0017 1.4 9.7 2.5 32 75 548 591 541 596 0.87 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF573-208 - 665 1.1e-07 32.5 80.9 12 12 0.0024 2 9.2 1.3 33 75 605 647 596 652 0.84 zinc-ribbon family DUF3850 PF12961.7 77 ZNF573-208 - 665 3e-07 30.4 3.4 1 9 0.026 21 5.2 0.0 2 39 115 152 114 170 0.90 Domain of unknown function (DUF3850) DUF3850 PF12961.7 77 ZNF573-208 - 665 3e-07 30.4 3.4 2 9 0.25 2.1e+02 2.1 0.0 15 59 184 229 178 238 0.74 Domain of unknown function (DUF3850) DUF3850 PF12961.7 77 ZNF573-208 - 665 3e-07 30.4 3.4 3 9 0.04 33 4.6 0.0 12 40 237 265 232 284 0.83 Domain of unknown function (DUF3850) DUF3850 PF12961.7 77 ZNF573-208 - 665 3e-07 30.4 3.4 4 9 0.62 5.1e+02 0.8 0.0 12 38 321 347 316 368 0.72 Domain of unknown function (DUF3850) DUF3850 PF12961.7 77 ZNF573-208 - 665 3e-07 30.4 3.4 5 9 0.11 88 3.2 0.0 12 36 377 401 366 415 0.82 Domain of unknown function (DUF3850) DUF3850 PF12961.7 77 ZNF573-208 - 665 3e-07 30.4 3.4 6 9 0.99 8e+02 0.2 0.0 10 26 431 447 425 453 0.80 Domain of unknown function (DUF3850) DUF3850 PF12961.7 77 ZNF573-208 - 665 3e-07 30.4 3.4 7 9 0.071 58 3.8 0.0 12 37 461 486 450 503 0.82 Domain of unknown function (DUF3850) DUF3850 PF12961.7 77 ZNF573-208 - 665 3e-07 30.4 3.4 8 9 6 4.9e+03 -2.3 0.0 12 33 545 566 542 586 0.79 Domain of unknown function (DUF3850) DUF3850 PF12961.7 77 ZNF573-208 - 665 3e-07 30.4 3.4 9 9 7.7 6.3e+03 -2.7 0.0 13 31 602 620 598 649 0.65 Domain of unknown function (DUF3850) zf-C2H2_11 PF16622.5 29 ZNF573-208 - 665 3.4e-07 29.9 86.5 1 19 0.21 1.7e+02 2.0 1.4 7 20 136 149 134 156 0.79 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF573-208 - 665 3.4e-07 29.9 86.5 2 19 0.047 38 4.1 0.2 6 23 163 180 161 183 0.80 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF573-208 - 665 3.4e-07 29.9 86.5 3 19 0.017 13 5.6 0.1 6 23 191 208 188 211 0.81 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF573-208 - 665 3.4e-07 29.9 86.5 4 19 0.027 22 4.9 0.1 3 14 216 227 215 234 0.75 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF573-208 - 665 3.4e-07 29.9 86.5 5 19 0.0019 1.6 8.6 0.4 6 25 247 266 245 268 0.86 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF573-208 - 665 3.4e-07 29.9 86.5 6 19 0.048 39 4.1 0.1 5 15 274 284 271 293 0.83 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF573-208 - 665 3.4e-07 29.9 86.5 7 19 4.6 3.8e+03 -2.2 0.2 7 14 304 311 299 311 0.85 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF573-208 - 665 3.4e-07 29.9 86.5 8 19 0.19 1.6e+02 2.2 0.1 6 16 331 341 329 351 0.87 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF573-208 - 665 3.4e-07 29.9 86.5 9 19 0.0064 5.2 6.9 0.1 6 26 359 379 357 380 0.90 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF573-208 - 665 3.4e-07 29.9 86.5 10 19 0.13 1.1e+02 2.7 0.6 7 16 388 397 386 405 0.79 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF573-208 - 665 3.4e-07 29.9 86.5 11 19 0.0035 2.8 7.8 0.1 6 26 415 435 412 436 0.91 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF573-208 - 665 3.4e-07 29.9 86.5 12 19 0.0079 6.4 6.6 0.3 7 26 444 463 442 464 0.90 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF573-208 - 665 3.4e-07 29.9 86.5 13 19 0.027 22 4.9 0.1 7 24 472 489 470 491 0.84 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF573-208 - 665 3.4e-07 29.9 86.5 14 19 0.00012 0.095 12.5 0.2 5 26 498 519 495 520 0.92 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF573-208 - 665 3.4e-07 29.9 86.5 15 19 5.9 4.8e+03 -2.6 0.2 9 13 527 531 526 536 0.80 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF573-208 - 665 3.4e-07 29.9 86.5 16 19 0.46 3.8e+02 1.0 0.1 5 14 554 563 550 575 0.76 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF573-208 - 665 3.4e-07 29.9 86.5 17 19 0.14 1.2e+02 2.6 0.0 6 26 583 603 578 604 0.81 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF573-208 - 665 3.4e-07 29.9 86.5 18 19 0.031 25 4.7 0.0 6 26 611 631 609 632 0.88 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF573-208 - 665 3.4e-07 29.9 86.5 19 19 0.29 2.4e+02 1.6 0.5 7 26 640 659 638 660 0.86 zinc-finger C2H2-type # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF573-208.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF573-208.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF573-208.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF573-208.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF573-208.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:09:40 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF573-209.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF573-209.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF573-209.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF573-209.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF573-209.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:09:40 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZNF573-210 - 577 2.1e-133 429.4 158.8 1 20 0.0016 1.2 9.7 2.9 12 26 43 57 41 57 0.89 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF573-210 - 577 2.1e-133 429.4 158.8 2 20 3.9e-06 0.0029 18.0 1.1 5 25 64 84 60 85 0.89 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF573-210 - 577 2.1e-133 429.4 158.8 3 20 7.8e-11 5.8e-08 32.8 1.0 2 25 89 112 88 113 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF573-210 - 577 2.1e-133 429.4 158.8 4 20 1.5e-09 1.1e-06 28.8 0.6 2 24 117 139 116 141 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF573-210 - 577 2.1e-133 429.4 158.8 5 20 6.6e-09 4.9e-06 26.7 0.3 3 25 146 168 144 169 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF573-210 - 577 2.1e-133 429.4 158.8 6 20 1.5e-11 1.1e-08 35.1 2.9 1 25 172 196 172 197 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF573-210 - 577 2.1e-133 429.4 158.8 7 20 3e-06 0.0022 18.3 0.4 1 25 200 224 200 225 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF573-210 - 577 2.1e-133 429.4 158.8 8 20 9.2e-11 6.8e-08 32.6 1.0 2 26 229 253 228 253 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF573-210 - 577 2.1e-133 429.4 158.8 9 20 3.6e-08 2.7e-05 24.4 2.6 5 25 260 280 257 280 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF573-210 - 577 2.1e-133 429.4 158.8 10 20 2e-10 1.5e-07 31.5 0.8 1 26 284 309 284 309 0.97 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF573-210 - 577 2.1e-133 429.4 158.8 11 20 1e-10 7.5e-08 32.5 2.3 2 25 313 336 312 336 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF573-210 - 577 2.1e-133 429.4 158.8 12 20 7.9e-08 5.9e-05 23.3 5.3 2 25 341 364 340 364 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF573-210 - 577 2.1e-133 429.4 158.8 13 20 7.3e-10 5.5e-07 29.7 0.4 1 26 368 393 368 393 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF573-210 - 577 2.1e-133 429.4 158.8 14 20 3.7e-11 2.8e-08 33.8 1.9 1 25 396 420 396 420 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF573-210 - 577 2.1e-133 429.4 158.8 15 20 9.5e-11 7.1e-08 32.5 1.7 2 25 425 448 424 448 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF573-210 - 577 2.1e-133 429.4 158.8 16 20 2.1e-09 1.5e-06 28.3 0.8 1 25 452 476 452 477 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF573-210 - 577 2.1e-133 429.4 158.8 17 20 7e-08 5.3e-05 23.5 1.8 1 25 480 504 480 504 0.97 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF573-210 - 577 2.1e-133 429.4 158.8 18 20 1.3e-10 9.7e-08 32.1 0.8 2 25 509 532 508 533 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF573-210 - 577 2.1e-133 429.4 158.8 19 20 1.7e-11 1.3e-08 34.9 0.6 1 25 536 560 536 561 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF573-210 - 577 2.1e-133 429.4 158.8 20 20 0.57 4.3e+02 1.6 0.2 1 11 564 574 564 576 0.86 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZNF573-210 - 577 6.8e-95 306.6 147.8 1 19 8.7e-05 0.065 13.7 4.3 1 23 46 68 46 68 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF573-210 - 577 6.8e-95 306.6 147.8 2 19 8e-07 0.0006 20.1 1.4 1 23 74 96 74 96 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF573-210 - 577 6.8e-95 306.6 147.8 3 19 2.9e-07 0.00021 21.5 1.0 1 23 102 124 102 124 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF573-210 - 577 6.8e-95 306.6 147.8 4 19 5e-06 0.0037 17.6 0.4 1 23 130 152 130 152 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF573-210 - 577 6.8e-95 306.6 147.8 5 19 1.5e-07 0.00011 22.4 0.3 1 23 158 180 158 180 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF573-210 - 577 6.8e-95 306.6 147.8 6 19 2.6e-08 1.9e-05 24.8 1.3 1 23 186 208 186 208 0.93 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF573-210 - 577 6.8e-95 306.6 147.8 7 19 1.1e-07 8.1e-05 22.9 1.1 1 23 214 236 214 236 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF573-210 - 577 6.8e-95 306.6 147.8 8 19 6.2e-07 0.00047 20.5 0.5 1 23 242 264 242 264 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF573-210 - 577 6.8e-95 306.6 147.8 9 19 1e-06 0.00077 19.8 2.3 1 23 270 292 270 292 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF573-210 - 577 6.8e-95 306.6 147.8 10 19 1.3e-06 0.00097 19.5 2.1 1 23 298 320 298 320 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF573-210 - 577 6.8e-95 306.6 147.8 11 19 1.1e-06 0.00084 19.7 0.5 1 23 326 348 326 348 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF573-210 - 577 6.8e-95 306.6 147.8 12 19 1.5e-06 0.0011 19.3 2.3 1 23 354 376 354 376 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF573-210 - 577 6.8e-95 306.6 147.8 13 19 2.6e-07 0.00019 21.7 0.3 1 23 382 404 382 404 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF573-210 - 577 6.8e-95 306.6 147.8 14 19 1.1e-06 0.00079 19.7 2.6 1 23 410 432 410 432 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF573-210 - 577 6.8e-95 306.6 147.8 15 19 6.4e-06 0.0048 17.3 2.4 1 23 438 460 438 460 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF573-210 - 577 6.8e-95 306.6 147.8 16 19 2.5e-09 1.8e-06 28.0 2.2 1 23 466 488 466 488 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF573-210 - 577 6.8e-95 306.6 147.8 17 19 3.6e-07 0.00027 21.2 0.6 1 23 494 516 494 516 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF573-210 - 577 6.8e-95 306.6 147.8 18 19 2.9e-09 2.2e-06 27.8 0.1 1 23 522 544 522 544 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF573-210 - 577 6.8e-95 306.6 147.8 19 19 5e-08 3.7e-05 23.9 0.5 1 23 550 572 550 572 0.99 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZNF573-210 - 577 1e-56 184.7 138.6 1 19 0.00059 0.44 11.5 3.0 1 23 46 68 46 69 0.84 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF573-210 - 577 1e-56 184.7 138.6 2 19 7e-05 0.052 14.4 1.0 1 23 74 96 74 97 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF573-210 - 577 1e-56 184.7 138.6 3 19 1.2e-05 0.0089 16.8 0.8 1 23 102 124 102 125 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF573-210 - 577 1e-56 184.7 138.6 4 19 0.00073 0.55 11.2 0.4 1 23 130 152 130 153 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF573-210 - 577 1e-56 184.7 138.6 5 19 9.5e-05 0.071 14.0 0.4 1 23 158 180 158 181 0.91 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF573-210 - 577 1e-56 184.7 138.6 6 19 0.00015 0.11 13.4 1.0 1 19 186 204 186 208 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF573-210 - 577 1e-56 184.7 138.6 7 19 0.00016 0.12 13.3 0.9 1 23 214 236 214 237 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF573-210 - 577 1e-56 184.7 138.6 8 19 0.00044 0.33 11.9 0.5 1 23 242 264 242 265 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF573-210 - 577 1e-56 184.7 138.6 9 19 9.8e-05 0.073 13.9 1.2 1 23 270 292 270 293 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF573-210 - 577 1e-56 184.7 138.6 10 19 2.2e-06 0.0016 19.1 1.5 1 23 298 320 298 321 0.97 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF573-210 - 577 1e-56 184.7 138.6 11 19 2.2e-05 0.017 16.0 0.6 1 23 326 348 326 349 0.89 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF573-210 - 577 1e-56 184.7 138.6 12 19 0.0001 0.078 13.9 1.4 1 23 354 376 354 377 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF573-210 - 577 1e-56 184.7 138.6 13 19 8.1e-06 0.0061 17.3 0.3 1 23 382 404 382 405 0.97 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF573-210 - 577 1e-56 184.7 138.6 14 19 1.9e-05 0.014 16.2 1.9 1 23 410 432 410 433 0.87 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF573-210 - 577 1e-56 184.7 138.6 15 19 0.0013 1 10.4 1.5 1 23 438 460 438 461 0.89 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF573-210 - 577 1e-56 184.7 138.6 16 19 2e-05 0.015 16.1 1.4 1 23 466 488 466 489 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF573-210 - 577 1e-56 184.7 138.6 17 19 7.4e-05 0.055 14.3 0.5 1 23 494 516 494 517 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF573-210 - 577 1e-56 184.7 138.6 18 19 1.4e-05 0.011 16.5 0.2 1 23 522 544 522 545 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF573-210 - 577 1e-56 184.7 138.6 19 19 8.5e-06 0.0063 17.2 0.5 1 23 550 572 550 573 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF573-210 - 577 3.1e-53 176.9 144.8 1 19 0.00038 0.29 11.2 4.1 2 21 46 65 45 68 0.89 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF573-210 - 577 3.1e-53 176.9 144.8 2 19 3.7e-06 0.0028 17.6 2.0 2 22 74 94 74 98 0.90 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF573-210 - 577 3.1e-53 176.9 144.8 3 19 1.9e-06 0.0014 18.5 1.2 2 23 102 123 102 127 0.90 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF573-210 - 577 3.1e-53 176.9 144.8 4 19 0.016 12 6.1 0.3 2 11 130 139 129 141 0.92 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF573-210 - 577 3.1e-53 176.9 144.8 5 19 0.001 0.76 9.8 0.6 2 20 158 176 158 181 0.78 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF573-210 - 577 3.1e-53 176.9 144.8 6 19 6.6e-05 0.049 13.6 0.6 2 20 186 204 186 204 0.83 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF573-210 - 577 3.1e-53 176.9 144.8 7 19 0.0046 3.4 7.8 0.8 2 22 214 234 214 238 0.87 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF573-210 - 577 3.1e-53 176.9 144.8 8 19 0.0025 1.9 8.6 0.3 2 13 242 253 242 254 0.90 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF573-210 - 577 3.1e-53 176.9 144.8 9 19 1.5e-05 0.011 15.7 0.9 2 20 270 288 270 292 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF573-210 - 577 3.1e-53 176.9 144.8 10 19 2.1e-06 0.0016 18.4 2.9 2 24 298 320 297 323 0.95 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF573-210 - 577 3.1e-53 176.9 144.8 11 19 0.0006 0.45 10.6 1.0 2 12 326 336 326 348 0.86 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF573-210 - 577 3.1e-53 176.9 144.8 12 19 9.4e-06 0.007 16.3 1.7 1 20 353 372 353 376 0.92 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF573-210 - 577 3.1e-53 176.9 144.8 13 19 3.5e-09 2.6e-06 27.3 0.6 2 24 382 404 381 407 0.95 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF573-210 - 577 3.1e-53 176.9 144.8 14 19 0.00044 0.33 11.0 1.1 2 12 410 420 410 421 0.95 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF573-210 - 577 3.1e-53 176.9 144.8 15 19 0.00018 0.13 12.3 0.7 2 21 438 457 438 463 0.86 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF573-210 - 577 3.1e-53 176.9 144.8 16 19 7.3e-05 0.055 13.5 1.0 2 20 466 484 466 490 0.82 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF573-210 - 577 3.1e-53 176.9 144.8 17 19 4.1e-05 0.031 14.3 1.9 2 22 494 514 494 517 0.87 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF573-210 - 577 3.1e-53 176.9 144.8 18 19 9.7e-05 0.072 13.1 0.3 2 20 522 540 522 546 0.84 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF573-210 - 577 3.1e-53 176.9 144.8 19 19 5.2e-08 3.9e-05 23.5 0.8 2 26 550 574 550 575 0.96 C2H2-type zinc finger zf-C2H2_jaz PF12171.8 27 ZNF573-210 - 577 2e-26 91.7 89.1 1 19 0.027 20 5.6 0.8 2 20 46 64 45 64 0.89 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF573-210 - 577 2e-26 91.7 89.1 2 19 0.00031 0.23 11.8 0.1 2 22 74 94 73 94 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF573-210 - 577 2e-26 91.7 89.1 3 19 0.00042 0.32 11.3 0.0 2 22 102 122 101 122 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF573-210 - 577 2e-26 91.7 89.1 4 19 0.78 5.8e+02 0.9 0.4 2 22 130 150 129 150 0.86 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF573-210 - 577 2e-26 91.7 89.1 5 19 0.24 1.8e+02 2.6 0.0 2 12 158 168 157 177 0.90 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF573-210 - 577 2e-26 91.7 89.1 6 19 0.00025 0.19 12.1 0.1 2 20 186 204 185 204 0.95 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF573-210 - 577 2e-26 91.7 89.1 7 19 0.2 1.5e+02 2.8 0.0 2 22 214 234 213 234 0.91 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF573-210 - 577 2e-26 91.7 89.1 8 19 0.0023 1.7 9.0 0.0 2 22 242 262 241 262 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF573-210 - 577 2e-26 91.7 89.1 9 19 0.0091 6.8 7.1 0.3 2 11 270 279 269 290 0.88 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF573-210 - 577 2e-26 91.7 89.1 10 19 0.048 36 4.8 1.3 2 24 298 320 297 320 0.90 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF573-210 - 577 2e-26 91.7 89.1 11 19 0.12 93 3.5 0.5 2 12 326 336 325 346 0.86 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF573-210 - 577 2e-26 91.7 89.1 12 19 0.0063 4.7 7.6 0.6 2 11 354 363 353 374 0.89 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF573-210 - 577 2e-26 91.7 89.1 13 19 0.00032 0.24 11.7 0.3 2 24 382 404 381 404 0.95 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF573-210 - 577 2e-26 91.7 89.1 14 19 0.0064 4.8 7.6 0.7 2 22 410 430 409 430 0.85 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF573-210 - 577 2e-26 91.7 89.1 15 19 0.012 9.1 6.7 0.5 2 11 438 447 437 448 0.91 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF573-210 - 577 2e-26 91.7 89.1 16 19 5.9e-05 0.044 14.1 0.1 2 21 466 485 465 486 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF573-210 - 577 2e-26 91.7 89.1 17 19 0.024 18 5.8 0.5 2 21 494 513 493 514 0.78 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF573-210 - 577 2e-26 91.7 89.1 18 19 2.8e-05 0.021 15.1 0.0 2 22 522 542 521 542 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF573-210 - 577 2e-26 91.7 89.1 19 19 0.016 12 6.4 0.0 2 22 550 570 549 570 0.90 Zinc-finger double-stranded RNA-binding Zn-ribbon_8 PF09723.10 40 ZNF573-210 - 577 3.2e-23 81.5 107.0 1 17 0.0007 0.52 10.5 5.2 6 37 46 84 44 85 0.80 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF573-210 - 577 3.2e-23 81.5 107.0 2 17 0.0001 0.076 13.2 5.9 6 37 74 112 73 113 0.90 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF573-210 - 577 3.2e-23 81.5 107.0 3 17 3.2e-05 0.024 14.7 4.4 6 34 102 137 100 140 0.94 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF573-210 - 577 3.2e-23 81.5 107.0 4 17 6.7e-06 0.005 16.9 4.5 6 38 158 197 157 199 0.91 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF573-210 - 577 3.2e-23 81.5 107.0 5 17 5.1e-06 0.0038 17.3 3.7 6 38 186 225 184 225 0.83 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF573-210 - 577 3.2e-23 81.5 107.0 6 17 3.9e-05 0.029 14.5 2.5 6 34 214 249 213 254 0.92 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF573-210 - 577 3.2e-23 81.5 107.0 7 17 0.00041 0.31 11.2 4.5 6 35 270 306 269 309 0.84 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF573-210 - 577 3.2e-23 81.5 107.0 8 17 0.00067 0.5 10.5 5.5 6 34 298 333 297 336 0.90 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF573-210 - 577 3.2e-23 81.5 107.0 9 17 0.0081 6.1 7.1 0.7 6 16 326 336 325 349 0.83 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF573-210 - 577 3.2e-23 81.5 107.0 10 17 0.0017 1.3 9.2 4.1 6 34 354 389 353 393 0.84 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF573-210 - 577 3.2e-23 81.5 107.0 11 17 0.0064 4.8 7.4 6.0 6 34 382 417 381 419 0.82 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF573-210 - 577 3.2e-23 81.5 107.0 12 17 0.00022 0.16 12.1 3.8 6 34 410 445 409 448 0.90 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF573-210 - 577 3.2e-23 81.5 107.0 13 17 1.5e-05 0.011 15.8 3.6 6 38 438 477 436 479 0.88 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF573-210 - 577 3.2e-23 81.5 107.0 14 17 1.5e-05 0.012 15.8 5.3 6 35 466 502 465 506 0.88 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF573-210 - 577 3.2e-23 81.5 107.0 15 17 9.7e-06 0.0073 16.4 4.1 6 38 494 533 493 535 0.92 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF573-210 - 577 3.2e-23 81.5 107.0 16 17 9.9e-05 0.074 13.2 4.7 6 36 522 559 521 561 0.84 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF573-210 - 577 3.2e-23 81.5 107.0 17 17 0.009 6.7 6.9 0.2 6 16 550 560 549 573 0.83 Zinc ribbon domain zf_UBZ PF18439.1 32 ZNF573-210 - 577 2.2e-14 52.7 83.8 1 19 0.011 8 6.2 0.3 3 17 46 61 44 69 0.76 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF573-210 - 577 2.2e-14 52.7 83.8 2 19 0.0076 5.7 6.6 0.1 3 21 74 93 72 97 0.79 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF573-210 - 577 2.2e-14 52.7 83.8 3 19 0.0074 5.5 6.7 0.1 3 21 102 121 100 125 0.81 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF573-210 - 577 2.2e-14 52.7 83.8 4 19 0.036 27 4.5 0.1 2 12 129 139 128 148 0.88 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF573-210 - 577 2.2e-14 52.7 83.8 5 19 0.037 28 4.4 0.1 3 13 158 168 156 173 0.87 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF573-210 - 577 2.2e-14 52.7 83.8 6 19 0.0012 0.88 9.2 0.1 3 20 186 204 184 208 0.86 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF573-210 - 577 2.2e-14 52.7 83.8 7 19 0.0089 6.6 6.4 0.1 3 12 214 223 212 233 0.80 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF573-210 - 577 2.2e-14 52.7 83.8 8 19 0.11 84 2.9 0.2 3 10 242 249 240 255 0.86 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF573-210 - 577 2.2e-14 52.7 83.8 9 19 0.027 20 4.9 0.2 3 13 270 280 268 289 0.79 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF573-210 - 577 2.2e-14 52.7 83.8 10 19 0.059 44 3.8 0.1 3 13 298 308 296 317 0.79 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF573-210 - 577 2.2e-14 52.7 83.8 11 19 0.014 10 5.8 0.1 3 14 326 337 324 345 0.80 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF573-210 - 577 2.2e-14 52.7 83.8 12 19 0.022 16 5.2 0.3 2 13 353 364 352 373 0.79 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF573-210 - 577 2.2e-14 52.7 83.8 13 19 0.029 22 4.8 0.1 3 14 382 393 380 401 0.77 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF573-210 - 577 2.2e-14 52.7 83.8 14 19 0.00078 0.58 9.8 0.2 3 21 410 429 408 429 0.87 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF573-210 - 577 2.2e-14 52.7 83.8 15 19 3.2 2.4e+03 -1.8 0.4 3 12 438 447 436 449 0.86 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF573-210 - 577 2.2e-14 52.7 83.8 16 19 0.015 11 5.7 0.3 3 17 466 481 464 485 0.76 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF573-210 - 577 2.2e-14 52.7 83.8 17 19 0.01 7.7 6.2 0.1 3 20 494 512 492 513 0.77 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF573-210 - 577 2.2e-14 52.7 83.8 18 19 0.0058 4.3 7.0 0.1 3 20 522 540 520 541 0.82 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF573-210 - 577 2.2e-14 52.7 83.8 19 19 0.0092 6.9 6.4 0.1 3 12 550 559 548 569 0.87 Ubiquitin-Binding Zinc Finger XPA_N PF01286.18 32 ZNF573-210 - 577 1.4e-13 50.6 81.2 1 19 0.029 22 5.2 0.5 3 13 47 57 46 61 0.86 XPA protein N-terminal XPA_N PF01286.18 32 ZNF573-210 - 577 1.4e-13 50.6 81.2 2 19 0.0074 5.5 7.1 0.1 3 13 75 85 73 90 0.84 XPA protein N-terminal XPA_N PF01286.18 32 ZNF573-210 - 577 1.4e-13 50.6 81.2 3 19 0.013 9.4 6.4 0.1 3 13 103 113 101 119 0.83 XPA protein N-terminal XPA_N PF01286.18 32 ZNF573-210 - 577 1.4e-13 50.6 81.2 4 19 0.11 79 3.4 0.1 3 11 131 139 130 142 0.90 XPA protein N-terminal XPA_N PF01286.18 32 ZNF573-210 - 577 1.4e-13 50.6 81.2 5 19 0.022 17 5.6 0.1 3 12 159 168 157 170 0.88 XPA protein N-terminal XPA_N PF01286.18 32 ZNF573-210 - 577 1.4e-13 50.6 81.2 6 19 0.0069 5.1 7.2 0.1 3 12 187 196 185 204 0.87 XPA protein N-terminal XPA_N PF01286.18 32 ZNF573-210 - 577 1.4e-13 50.6 81.2 7 19 0.038 28 4.8 0.1 3 11 215 223 213 225 0.88 XPA protein N-terminal XPA_N PF01286.18 32 ZNF573-210 - 577 1.4e-13 50.6 81.2 8 19 0.081 60 3.8 0.1 3 13 243 253 241 259 0.78 XPA protein N-terminal XPA_N PF01286.18 32 ZNF573-210 - 577 1.4e-13 50.6 81.2 9 19 0.035 26 4.9 0.5 3 12 271 280 269 281 0.89 XPA protein N-terminal XPA_N PF01286.18 32 ZNF573-210 - 577 1.4e-13 50.6 81.2 10 19 0.24 1.8e+02 2.3 0.2 3 18 299 315 298 316 0.73 XPA protein N-terminal XPA_N PF01286.18 32 ZNF573-210 - 577 1.4e-13 50.6 81.2 11 19 0.012 9.3 6.4 0.1 3 12 327 336 325 341 0.90 XPA protein N-terminal XPA_N PF01286.18 32 ZNF573-210 - 577 1.4e-13 50.6 81.2 12 19 0.097 73 3.5 1.5 3 12 355 364 354 365 0.90 XPA protein N-terminal XPA_N PF01286.18 32 ZNF573-210 - 577 1.4e-13 50.6 81.2 13 19 0.12 92 3.2 0.2 3 10 383 390 382 394 0.87 XPA protein N-terminal XPA_N PF01286.18 32 ZNF573-210 - 577 1.4e-13 50.6 81.2 14 19 0.0075 5.6 7.1 0.1 3 12 411 420 409 427 0.88 XPA protein N-terminal XPA_N PF01286.18 32 ZNF573-210 - 577 1.4e-13 50.6 81.2 15 19 0.38 2.8e+02 1.7 0.2 19 27 437 445 435 447 0.74 XPA protein N-terminal XPA_N PF01286.18 32 ZNF573-210 - 577 1.4e-13 50.6 81.2 16 19 0.0034 2.5 8.2 0.1 3 14 467 478 465 483 0.88 XPA protein N-terminal XPA_N PF01286.18 32 ZNF573-210 - 577 1.4e-13 50.6 81.2 17 19 0.0098 7.4 6.7 0.1 3 12 495 504 493 511 0.89 XPA protein N-terminal XPA_N PF01286.18 32 ZNF573-210 - 577 1.4e-13 50.6 81.2 18 19 0.0096 7.2 6.8 0.1 3 12 523 532 521 538 0.89 XPA protein N-terminal XPA_N PF01286.18 32 ZNF573-210 - 577 1.4e-13 50.6 81.2 19 19 0.092 69 3.6 0.0 3 11 551 559 549 561 0.89 XPA protein N-terminal C1_4 PF07975.12 55 ZNF573-210 - 577 9.8e-09 35.3 92.5 1 18 0.0061 4.5 7.6 1.0 21 48 41 68 26 71 0.74 TFIIH C1-like domain C1_4 PF07975.12 55 ZNF573-210 - 577 9.8e-09 35.3 92.5 2 18 0.02 15 5.9 5.1 1 48 47 96 47 99 0.79 TFIIH C1-like domain C1_4 PF07975.12 55 ZNF573-210 - 577 9.8e-09 35.3 92.5 3 18 0.0099 7.4 6.9 1.9 1 48 75 124 75 126 0.85 TFIIH C1-like domain C1_4 PF07975.12 55 ZNF573-210 - 577 9.8e-09 35.3 92.5 4 18 0.00011 0.08 13.2 2.7 1 49 103 153 103 155 0.92 TFIIH C1-like domain C1_4 PF07975.12 55 ZNF573-210 - 577 9.8e-09 35.3 92.5 5 18 0.083 62 3.9 0.1 26 49 158 181 155 184 0.90 TFIIH C1-like domain C1_4 PF07975.12 55 ZNF573-210 - 577 9.8e-09 35.3 92.5 6 18 0.032 24 5.3 2.1 2 48 188 236 187 239 0.82 TFIIH C1-like domain C1_4 PF07975.12 55 ZNF573-210 - 577 9.8e-09 35.3 92.5 7 18 0.0099 7.4 6.9 1.3 2 48 216 264 215 267 0.81 TFIIH C1-like domain C1_4 PF07975.12 55 ZNF573-210 - 577 9.8e-09 35.3 92.5 8 18 0.0076 5.7 7.3 0.6 25 49 269 293 258 295 0.85 TFIIH C1-like domain C1_4 PF07975.12 55 ZNF573-210 - 577 9.8e-09 35.3 92.5 9 18 0.00052 0.38 11.0 3.1 1 49 271 321 271 324 0.86 TFIIH C1-like domain C1_4 PF07975.12 55 ZNF573-210 - 577 9.8e-09 35.3 92.5 10 18 0.0069 5.1 7.4 2.3 1 48 299 348 299 351 0.76 TFIIH C1-like domain C1_4 PF07975.12 55 ZNF573-210 - 577 9.8e-09 35.3 92.5 11 18 0.0049 3.6 7.9 4.7 2 49 328 377 327 379 0.74 TFIIH C1-like domain C1_4 PF07975.12 55 ZNF573-210 - 577 9.8e-09 35.3 92.5 12 18 0.0061 4.5 7.6 3.1 1 48 355 404 355 408 0.77 TFIIH C1-like domain C1_4 PF07975.12 55 ZNF573-210 - 577 9.8e-09 35.3 92.5 13 18 0.0042 3.1 8.1 2.6 2 49 384 433 383 436 0.81 TFIIH C1-like domain C1_4 PF07975.12 55 ZNF573-210 - 577 9.8e-09 35.3 92.5 14 18 0.014 10 6.4 4.3 2 49 412 461 411 463 0.77 TFIIH C1-like domain C1_4 PF07975.12 55 ZNF573-210 - 577 9.8e-09 35.3 92.5 15 18 0.039 29 5.0 4.2 1 48 439 488 439 491 0.84 TFIIH C1-like domain C1_4 PF07975.12 55 ZNF573-210 - 577 9.8e-09 35.3 92.5 16 18 0.017 12 6.2 3.4 1 48 467 516 467 518 0.78 TFIIH C1-like domain C1_4 PF07975.12 55 ZNF573-210 - 577 9.8e-09 35.3 92.5 17 18 0.0029 2.2 8.6 1.7 2 49 496 545 495 547 0.80 TFIIH C1-like domain C1_4 PF07975.12 55 ZNF573-210 - 577 9.8e-09 35.3 92.5 18 18 0.011 8.2 6.8 1.3 1 48 523 572 523 575 0.79 TFIIH C1-like domain zinc_ribbon_15 PF17032.5 86 ZNF573-210 - 577 1.7e-08 35.0 80.7 1 13 0.005 3.7 8.4 2.2 30 79 38 87 15 92 0.82 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF573-210 - 577 1.7e-08 35.0 80.7 2 13 0.0079 5.9 7.7 1.5 33 74 97 138 87 144 0.85 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF573-210 - 577 1.7e-08 35.0 80.7 3 13 0.008 6 7.7 0.9 31 76 123 168 118 174 0.81 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF573-210 - 577 1.7e-08 35.0 80.7 4 13 0.0038 2.8 8.7 1.0 34 77 154 197 144 203 0.82 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF573-210 - 577 1.7e-08 35.0 80.7 5 13 0.00034 0.25 12.1 1.2 32 75 180 223 172 231 0.88 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF573-210 - 577 1.7e-08 35.0 80.7 6 13 0.0032 2.4 9.0 1.2 33 75 209 251 201 257 0.82 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF573-210 - 577 1.7e-08 35.0 80.7 7 13 0.079 59 4.5 2.1 32 75 236 279 231 284 0.79 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF573-210 - 577 1.7e-08 35.0 80.7 8 13 0.0047 3.5 8.4 6.7 30 74 290 334 253 337 0.79 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF573-210 - 577 1.7e-08 35.0 80.7 9 13 0.0078 5.8 7.7 2.6 31 76 347 392 343 397 0.84 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF573-210 - 577 1.7e-08 35.0 80.7 10 13 0.0049 3.7 8.4 6.7 31 75 375 419 356 424 0.88 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF573-210 - 577 1.7e-08 35.0 80.7 11 13 0.0034 2.5 8.9 1.9 30 75 402 447 397 453 0.85 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF573-210 - 577 1.7e-08 35.0 80.7 12 13 0.0017 1.3 9.8 2.6 32 75 460 503 455 508 0.87 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF573-210 - 577 1.7e-08 35.0 80.7 13 13 0.0022 1.6 9.5 1.2 33 75 517 559 508 564 0.84 zinc-ribbon family zf-C2H2_11 PF16622.5 29 ZNF573-210 - 577 2.1e-08 33.8 86.5 1 19 0.2 1.5e+02 2.3 1.4 7 20 48 61 46 68 0.79 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF573-210 - 577 2.1e-08 33.8 86.5 2 19 0.044 33 4.4 0.2 6 23 75 92 73 95 0.80 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF573-210 - 577 2.1e-08 33.8 86.5 3 19 0.015 11 5.8 0.1 6 23 103 120 100 123 0.81 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF573-210 - 577 2.1e-08 33.8 86.5 4 19 0.026 19 5.1 0.1 3 14 128 139 127 146 0.75 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF573-210 - 577 2.1e-08 33.8 86.5 5 19 0.0018 1.3 8.8 0.4 6 25 159 178 157 180 0.86 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF573-210 - 577 2.1e-08 33.8 86.5 6 19 0.045 34 4.3 0.1 5 15 186 196 183 205 0.83 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF573-210 - 577 2.1e-08 33.8 86.5 7 19 4.3 3.2e+03 -2.0 0.2 7 14 216 223 211 223 0.85 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF573-210 - 577 2.1e-08 33.8 86.5 8 19 0.18 1.3e+02 2.4 0.1 6 16 243 253 241 263 0.87 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF573-210 - 577 2.1e-08 33.8 86.5 9 19 0.006 4.4 7.1 0.1 6 26 271 291 269 292 0.90 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF573-210 - 577 2.1e-08 33.8 86.5 10 19 0.12 92 2.9 0.6 7 16 300 309 298 317 0.78 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF573-210 - 577 2.1e-08 33.8 86.5 11 19 0.0032 2.4 8.0 0.1 6 26 327 347 324 348 0.91 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF573-210 - 577 2.1e-08 33.8 86.5 12 19 0.0073 5.5 6.8 0.3 7 26 356 375 354 376 0.90 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF573-210 - 577 2.1e-08 33.8 86.5 13 19 0.025 19 5.1 0.1 7 24 384 401 382 403 0.84 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF573-210 - 577 2.1e-08 33.8 86.5 14 19 0.00011 0.081 12.7 0.2 5 26 410 431 407 432 0.92 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF573-210 - 577 2.1e-08 33.8 86.5 15 19 5.5 4.1e+03 -2.4 0.2 9 13 439 443 438 448 0.80 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF573-210 - 577 2.1e-08 33.8 86.5 16 19 0.43 3.2e+02 1.2 0.1 5 14 466 475 462 487 0.76 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF573-210 - 577 2.1e-08 33.8 86.5 17 19 0.13 1e+02 2.8 0.0 6 26 495 515 490 516 0.81 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF573-210 - 577 2.1e-08 33.8 86.5 18 19 0.029 21 5.0 0.0 6 26 523 543 521 544 0.88 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF573-210 - 577 2.1e-08 33.8 86.5 19 19 0.27 2e+02 1.8 0.5 7 26 552 571 550 572 0.86 zinc-finger C2H2-type DUF3850 PF12961.7 77 ZNF573-210 - 577 1.7e-07 31.1 4.5 1 9 0.023 17 5.5 0.0 2 39 27 64 26 84 0.89 Domain of unknown function (DUF3850) DUF3850 PF12961.7 77 ZNF573-210 - 577 1.7e-07 31.1 4.5 2 9 0.27 2e+02 2.1 0.0 15 59 96 141 89 146 0.72 Domain of unknown function (DUF3850) DUF3850 PF12961.7 77 ZNF573-210 - 577 1.7e-07 31.1 4.5 3 9 0.037 27 4.9 0.0 11 40 148 177 143 194 0.84 Domain of unknown function (DUF3850) DUF3850 PF12961.7 77 ZNF573-210 - 577 1.7e-07 31.1 4.5 4 9 0.52 3.9e+02 1.2 0.0 12 39 233 260 228 284 0.72 Domain of unknown function (DUF3850) DUF3850 PF12961.7 77 ZNF573-210 - 577 1.7e-07 31.1 4.5 5 9 0.099 74 3.5 0.0 12 36 289 313 280 331 0.82 Domain of unknown function (DUF3850) DUF3850 PF12961.7 77 ZNF573-210 - 577 1.7e-07 31.1 4.5 6 9 0.96 7.2e+02 0.3 0.0 10 26 343 359 339 365 0.79 Domain of unknown function (DUF3850) DUF3850 PF12961.7 77 ZNF573-210 - 577 1.7e-07 31.1 4.5 7 9 0.065 49 4.1 0.0 12 37 373 398 362 415 0.82 Domain of unknown function (DUF3850) DUF3850 PF12961.7 77 ZNF573-210 - 577 1.7e-07 31.1 4.5 8 9 5.2 3.9e+03 -2.0 0.0 12 33 457 478 454 499 0.77 Domain of unknown function (DUF3850) DUF3850 PF12961.7 77 ZNF573-210 - 577 1.7e-07 31.1 4.5 9 9 7.1 5.3e+03 -2.5 0.0 13 31 514 532 510 561 0.65 Domain of unknown function (DUF3850) # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF573-210.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF573-210.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF573-210.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF573-210.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF573-210.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:09:41 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF573-211.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF573-211.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF573-211.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF573-211.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF573-211.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:09:41 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF573-212.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF573-212.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF573-212.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF573-212.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF573-212.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:09:42 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF573-213.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF573-213.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF573-213.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF573-213.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF573-213.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:09:42 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF573-214.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF573-214.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF573-214.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF573-214.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF573-214.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:09:43 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF573-215.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF573-215.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF573-215.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF573-215.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF573-215.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:09:43 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZNF573-216 - 607 6.4e-133 427.8 158.8 1 20 0.0016 1.3 9.6 2.9 12 26 73 87 71 87 0.89 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF573-216 - 607 6.4e-133 427.8 158.8 2 20 3.8e-06 0.0031 17.9 1.1 5 25 94 114 90 115 0.89 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF573-216 - 607 6.4e-133 427.8 158.8 3 20 7.6e-11 6.2e-08 32.7 1.0 2 25 119 142 118 143 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF573-216 - 607 6.4e-133 427.8 158.8 4 20 1.4e-09 1.2e-06 28.7 0.6 2 24 147 169 146 171 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF573-216 - 607 6.4e-133 427.8 158.8 5 20 6.4e-09 5.2e-06 26.6 0.3 3 25 176 198 174 199 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF573-216 - 607 6.4e-133 427.8 158.8 6 20 1.4e-11 1.2e-08 35.0 2.9 1 25 202 226 202 227 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF573-216 - 607 6.4e-133 427.8 158.8 7 20 2.9e-06 0.0024 18.2 0.4 1 25 230 254 230 255 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF573-216 - 607 6.4e-133 427.8 158.8 8 20 8.9e-11 7.3e-08 32.5 1.0 2 26 259 283 258 283 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF573-216 - 607 6.4e-133 427.8 158.8 9 20 3.5e-08 2.9e-05 24.3 2.6 5 25 290 310 287 310 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF573-216 - 607 6.4e-133 427.8 158.8 10 20 1.9e-10 1.6e-07 31.5 0.8 1 26 314 339 314 339 0.97 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF573-216 - 607 6.4e-133 427.8 158.8 11 20 9.7e-11 7.9e-08 32.4 2.3 2 25 343 366 342 366 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF573-216 - 607 6.4e-133 427.8 158.8 12 20 7.7e-08 6.3e-05 23.2 5.3 2 25 371 394 370 394 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF573-216 - 607 6.4e-133 427.8 158.8 13 20 7.2e-10 5.8e-07 29.6 0.4 1 26 398 423 398 423 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF573-216 - 607 6.4e-133 427.8 158.8 14 20 3.6e-11 2.9e-08 33.7 1.9 1 25 426 450 426 450 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF573-216 - 607 6.4e-133 427.8 158.8 15 20 9.2e-11 7.5e-08 32.5 1.7 2 25 455 478 454 478 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF573-216 - 607 6.4e-133 427.8 158.8 16 20 2e-09 1.6e-06 28.2 0.8 1 25 482 506 482 507 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF573-216 - 607 6.4e-133 427.8 158.8 17 20 6.8e-08 5.6e-05 23.4 1.8 1 25 510 534 510 534 0.97 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF573-216 - 607 6.4e-133 427.8 158.8 18 20 1.3e-10 1e-07 32.0 0.8 2 25 539 562 538 563 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF573-216 - 607 6.4e-133 427.8 158.8 19 20 1.7e-11 1.4e-08 34.8 0.6 1 25 566 590 566 591 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF573-216 - 607 6.4e-133 427.8 158.8 20 20 0.55 4.5e+02 1.5 0.2 1 11 594 604 594 606 0.86 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZNF573-216 - 607 1.9e-94 305.1 147.8 1 19 8.5e-05 0.069 13.6 4.3 1 23 76 98 76 98 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF573-216 - 607 1.9e-94 305.1 147.8 2 19 7.8e-07 0.00063 20.1 1.4 1 23 104 126 104 126 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF573-216 - 607 1.9e-94 305.1 147.8 3 19 2.8e-07 0.00023 21.5 1.0 1 23 132 154 132 154 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF573-216 - 607 1.9e-94 305.1 147.8 4 19 4.9e-06 0.004 17.5 0.4 1 23 160 182 160 182 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF573-216 - 607 1.9e-94 305.1 147.8 5 19 1.5e-07 0.00012 22.3 0.3 1 23 188 210 188 210 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF573-216 - 607 1.9e-94 305.1 147.8 6 19 2.5e-08 2e-05 24.7 1.3 1 23 216 238 216 238 0.93 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF573-216 - 607 1.9e-94 305.1 147.8 7 19 1.1e-07 8.6e-05 22.8 1.1 1 23 244 266 244 266 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF573-216 - 607 1.9e-94 305.1 147.8 8 19 6.1e-07 0.00049 20.4 0.5 1 23 272 294 272 294 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF573-216 - 607 1.9e-94 305.1 147.8 9 19 1e-06 0.00082 19.7 2.3 1 23 300 322 300 322 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF573-216 - 607 1.9e-94 305.1 147.8 10 19 1.3e-06 0.001 19.4 2.1 1 23 328 350 328 350 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF573-216 - 607 1.9e-94 305.1 147.8 11 19 1.1e-06 0.0009 19.6 0.5 1 23 356 378 356 378 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF573-216 - 607 1.9e-94 305.1 147.8 12 19 1.5e-06 0.0012 19.2 2.3 1 23 384 406 384 406 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF573-216 - 607 1.9e-94 305.1 147.8 13 19 2.5e-07 0.00021 21.6 0.3 1 23 412 434 412 434 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF573-216 - 607 1.9e-94 305.1 147.8 14 19 1e-06 0.00084 19.7 2.6 1 23 440 462 440 462 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF573-216 - 607 1.9e-94 305.1 147.8 15 19 6.3e-06 0.0051 17.2 2.4 1 23 468 490 468 490 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF573-216 - 607 1.9e-94 305.1 147.8 16 19 2.4e-09 1.9e-06 28.0 2.2 1 23 496 518 496 518 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF573-216 - 607 1.9e-94 305.1 147.8 17 19 3.5e-07 0.00029 21.1 0.6 1 23 524 546 524 546 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF573-216 - 607 1.9e-94 305.1 147.8 18 19 2.8e-09 2.3e-06 27.7 0.1 1 23 552 574 552 574 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF573-216 - 607 1.9e-94 305.1 147.8 19 19 4.8e-08 3.9e-05 23.8 0.5 1 23 580 602 580 602 0.99 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZNF573-216 - 607 2.7e-56 183.3 138.6 1 19 0.00057 0.46 11.4 3.0 1 23 76 98 76 99 0.84 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF573-216 - 607 2.7e-56 183.3 138.6 2 19 6.8e-05 0.056 14.3 1.0 1 23 104 126 104 127 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF573-216 - 607 2.7e-56 183.3 138.6 3 19 1.2e-05 0.0094 16.7 0.8 1 23 132 154 132 155 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF573-216 - 607 2.7e-56 183.3 138.6 4 19 0.00071 0.58 11.1 0.4 1 23 160 182 160 183 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF573-216 - 607 2.7e-56 183.3 138.6 5 19 9.2e-05 0.075 13.9 0.4 1 23 188 210 188 211 0.91 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF573-216 - 607 2.7e-56 183.3 138.6 6 19 0.00014 0.12 13.3 1.0 1 19 216 234 216 238 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF573-216 - 607 2.7e-56 183.3 138.6 7 19 0.00015 0.13 13.2 0.9 1 23 244 266 244 267 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF573-216 - 607 2.7e-56 183.3 138.6 8 19 0.00042 0.35 11.8 0.5 1 23 272 294 272 295 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF573-216 - 607 2.7e-56 183.3 138.6 9 19 9.5e-05 0.078 13.9 1.2 1 23 300 322 300 323 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF573-216 - 607 2.7e-56 183.3 138.6 10 19 2.1e-06 0.0017 19.0 1.5 1 23 328 350 328 351 0.97 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF573-216 - 607 2.7e-56 183.3 138.6 11 19 2.2e-05 0.018 15.9 0.6 1 23 356 378 356 379 0.89 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF573-216 - 607 2.7e-56 183.3 138.6 12 19 0.0001 0.082 13.8 1.4 1 23 384 406 384 407 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF573-216 - 607 2.7e-56 183.3 138.6 13 19 7.9e-06 0.0064 17.2 0.3 1 23 412 434 412 435 0.97 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF573-216 - 607 2.7e-56 183.3 138.6 14 19 1.9e-05 0.015 16.1 1.9 1 23 440 462 440 463 0.87 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF573-216 - 607 2.7e-56 183.3 138.6 15 19 0.0013 1.1 10.3 1.5 1 23 468 490 468 491 0.89 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF573-216 - 607 2.7e-56 183.3 138.6 16 19 1.9e-05 0.016 16.0 1.4 1 23 496 518 496 519 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF573-216 - 607 2.7e-56 183.3 138.6 17 19 7.2e-05 0.058 14.2 0.5 1 23 524 546 524 547 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF573-216 - 607 2.7e-56 183.3 138.6 18 19 1.4e-05 0.011 16.4 0.2 1 23 552 574 552 575 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF573-216 - 607 2.7e-56 183.3 138.6 19 19 8.3e-06 0.0067 17.2 0.5 1 23 580 602 580 603 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF573-216 - 607 8.7e-53 175.5 144.8 1 19 0.00037 0.3 11.1 4.1 2 21 76 95 75 98 0.89 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF573-216 - 607 8.7e-53 175.5 144.8 2 19 3.6e-06 0.0029 17.5 2.0 2 22 104 124 104 128 0.90 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF573-216 - 607 8.7e-53 175.5 144.8 3 19 1.9e-06 0.0015 18.4 1.2 2 23 132 153 132 157 0.90 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF573-216 - 607 8.7e-53 175.5 144.8 4 19 0.015 12 6.0 0.3 2 11 160 169 159 171 0.92 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF573-216 - 607 8.7e-53 175.5 144.8 5 19 0.00099 0.81 9.8 0.6 2 20 188 206 188 211 0.78 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF573-216 - 607 8.7e-53 175.5 144.8 6 19 6.4e-05 0.052 13.6 0.6 2 20 216 234 216 234 0.83 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF573-216 - 607 8.7e-53 175.5 144.8 7 19 0.0045 3.6 7.7 0.8 2 22 244 264 244 268 0.87 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF573-216 - 607 8.7e-53 175.5 144.8 8 19 0.0025 2 8.5 0.3 2 13 272 283 272 284 0.90 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF573-216 - 607 8.7e-53 175.5 144.8 9 19 1.4e-05 0.012 15.6 0.9 2 20 300 318 300 322 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF573-216 - 607 8.7e-53 175.5 144.8 10 19 2.1e-06 0.0017 18.3 2.9 2 24 328 350 327 353 0.95 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF573-216 - 607 8.7e-53 175.5 144.8 11 19 0.00058 0.47 10.5 1.0 2 12 356 366 356 378 0.86 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF573-216 - 607 8.7e-53 175.5 144.8 12 19 9.1e-06 0.0075 16.3 1.7 1 20 383 402 383 406 0.92 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF573-216 - 607 8.7e-53 175.5 144.8 13 19 3.4e-09 2.8e-06 27.2 0.6 2 24 412 434 411 437 0.95 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF573-216 - 607 8.7e-53 175.5 144.8 14 19 0.00042 0.35 10.9 1.1 2 12 440 450 440 451 0.95 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF573-216 - 607 8.7e-53 175.5 144.8 15 19 0.00017 0.14 12.2 0.7 2 21 468 487 468 493 0.86 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF573-216 - 607 8.7e-53 175.5 144.8 16 19 7.1e-05 0.058 13.4 1.0 2 20 496 514 496 520 0.82 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF573-216 - 607 8.7e-53 175.5 144.8 17 19 4e-05 0.033 14.2 1.9 2 22 524 544 524 547 0.87 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF573-216 - 607 8.7e-53 175.5 144.8 18 19 9.4e-05 0.077 13.0 0.3 2 20 552 570 552 576 0.83 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF573-216 - 607 8.7e-53 175.5 144.8 19 19 5.1e-08 4.2e-05 23.4 0.8 2 26 580 604 580 605 0.96 C2H2-type zinc finger zf-C2H2_jaz PF12171.8 27 ZNF573-216 - 607 5.7e-26 90.2 89.1 1 19 0.026 22 5.5 0.8 2 20 76 94 75 94 0.89 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF573-216 - 607 5.7e-26 90.2 89.1 2 19 0.0003 0.25 11.7 0.1 2 22 104 124 103 124 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF573-216 - 607 5.7e-26 90.2 89.1 3 19 0.00041 0.34 11.3 0.0 2 22 132 152 131 152 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF573-216 - 607 5.7e-26 90.2 89.1 4 19 0.76 6.2e+02 0.9 0.4 2 22 160 180 159 180 0.86 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF573-216 - 607 5.7e-26 90.2 89.1 5 19 0.23 1.9e+02 2.5 0.0 2 12 188 198 187 207 0.90 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF573-216 - 607 5.7e-26 90.2 89.1 6 19 0.00024 0.2 12.0 0.1 2 20 216 234 215 234 0.95 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF573-216 - 607 5.7e-26 90.2 89.1 7 19 0.2 1.6e+02 2.7 0.0 2 22 244 264 243 264 0.91 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF573-216 - 607 5.7e-26 90.2 89.1 8 19 0.0023 1.8 8.9 0.0 2 22 272 292 271 292 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF573-216 - 607 5.7e-26 90.2 89.1 9 19 0.0089 7.2 7.0 0.3 2 11 300 309 299 320 0.88 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF573-216 - 607 5.7e-26 90.2 89.1 10 19 0.046 38 4.7 1.3 2 24 328 350 327 350 0.90 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF573-216 - 607 5.7e-26 90.2 89.1 11 19 0.12 98 3.4 0.5 2 12 356 366 355 376 0.86 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF573-216 - 607 5.7e-26 90.2 89.1 12 19 0.0061 5 7.5 0.6 2 11 384 393 383 404 0.89 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF573-216 - 607 5.7e-26 90.2 89.1 13 19 0.00031 0.26 11.6 0.3 2 24 412 434 411 434 0.95 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF573-216 - 607 5.7e-26 90.2 89.1 14 19 0.0062 5.1 7.5 0.7 2 22 440 460 439 460 0.85 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF573-216 - 607 5.7e-26 90.2 89.1 15 19 0.012 9.7 6.6 0.5 2 11 468 477 467 478 0.91 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF573-216 - 607 5.7e-26 90.2 89.1 16 19 5.8e-05 0.047 14.0 0.1 2 21 496 515 495 516 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF573-216 - 607 5.7e-26 90.2 89.1 17 19 0.023 19 5.7 0.5 2 21 524 543 523 544 0.78 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF573-216 - 607 5.7e-26 90.2 89.1 18 19 2.8e-05 0.022 15.0 0.0 2 22 552 572 551 572 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF573-216 - 607 5.7e-26 90.2 89.1 19 19 0.015 12 6.3 0.0 2 22 580 600 579 600 0.90 Zinc-finger double-stranded RNA-binding Zn-ribbon_8 PF09723.10 40 ZNF573-216 - 607 5.3e-23 80.9 106.7 1 17 0.00082 0.67 10.1 5.4 6 37 76 114 75 115 0.80 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF573-216 - 607 5.3e-23 80.9 106.7 2 17 9.7e-05 0.079 13.1 5.9 6 37 104 142 103 143 0.90 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF573-216 - 607 5.3e-23 80.9 106.7 3 17 2.8e-05 0.023 14.8 4.2 6 34 132 167 131 170 0.94 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF573-216 - 607 5.3e-23 80.9 106.7 4 17 5.8e-06 0.0047 17.0 4.4 6 38 188 227 187 229 0.91 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF573-216 - 607 5.3e-23 80.9 106.7 5 17 4.6e-06 0.0038 17.3 3.5 6 38 216 255 215 255 0.83 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF573-216 - 607 5.3e-23 80.9 106.7 6 17 3.9e-05 0.032 14.3 2.5 6 34 244 279 243 284 0.92 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF573-216 - 607 5.3e-23 80.9 106.7 7 17 0.00038 0.31 11.2 4.4 6 35 300 336 299 339 0.84 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF573-216 - 607 5.3e-23 80.9 106.7 8 17 0.00054 0.44 10.7 5.3 6 34 328 363 327 367 0.90 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF573-216 - 607 5.3e-23 80.9 106.7 9 17 0.008 6.5 7.0 0.7 6 16 356 366 355 379 0.83 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF573-216 - 607 5.3e-23 80.9 106.7 10 17 0.0015 1.2 9.3 4.0 6 34 384 419 382 423 0.84 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF573-216 - 607 5.3e-23 80.9 106.7 11 17 0.0042 3.4 7.8 5.7 6 34 412 447 411 450 0.81 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF573-216 - 607 5.3e-23 80.9 106.7 12 17 0.00024 0.19 11.8 3.9 6 34 440 475 439 478 0.90 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF573-216 - 607 5.3e-23 80.9 106.7 13 17 1.4e-05 0.011 15.8 3.6 6 38 468 507 466 509 0.88 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF573-216 - 607 5.3e-23 80.9 106.7 14 17 1.3e-05 0.011 15.9 5.1 6 35 496 532 495 536 0.88 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF573-216 - 607 5.3e-23 80.9 106.7 15 17 8e-06 0.0065 16.6 3.9 6 38 524 563 523 565 0.92 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF573-216 - 607 5.3e-23 80.9 106.7 16 17 0.0001 0.085 13.0 4.9 6 36 552 589 551 591 0.84 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF573-216 - 607 5.3e-23 80.9 106.7 17 17 0.0088 7.2 6.8 0.2 6 16 580 590 579 603 0.83 Zinc ribbon domain zf_UBZ PF18439.1 32 ZNF573-216 - 607 5.4e-14 51.5 83.6 1 19 0.01 8.5 6.1 0.3 3 17 76 91 74 99 0.76 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF573-216 - 607 5.4e-14 51.5 83.6 2 19 0.0074 6 6.6 0.1 3 21 104 123 102 127 0.79 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF573-216 - 607 5.4e-14 51.5 83.6 3 19 0.0072 5.9 6.6 0.1 3 21 132 151 130 155 0.81 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF573-216 - 607 5.4e-14 51.5 83.6 4 19 0.035 29 4.4 0.1 2 12 159 169 158 178 0.88 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF573-216 - 607 5.4e-14 51.5 83.6 5 19 0.036 29 4.4 0.1 3 13 188 198 186 203 0.87 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF573-216 - 607 5.4e-14 51.5 83.6 6 19 0.0011 0.94 9.1 0.1 3 20 216 234 214 238 0.86 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF573-216 - 607 5.4e-14 51.5 83.6 7 19 0.0086 7 6.3 0.1 3 12 244 253 242 263 0.80 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF573-216 - 607 5.4e-14 51.5 83.6 8 19 0.11 89 2.8 0.2 3 10 272 279 270 285 0.86 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF573-216 - 607 5.4e-14 51.5 83.6 9 19 0.026 21 4.8 0.2 3 13 300 310 298 319 0.79 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF573-216 - 607 5.4e-14 51.5 83.6 10 19 0.058 47 3.7 0.1 3 13 328 338 326 347 0.79 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF573-216 - 607 5.4e-14 51.5 83.6 11 19 0.013 11 5.7 0.1 3 14 356 367 354 375 0.80 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF573-216 - 607 5.4e-14 51.5 83.6 12 19 0.021 17 5.1 0.3 2 13 383 394 382 403 0.79 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF573-216 - 607 5.4e-14 51.5 83.6 13 19 0.028 23 4.7 0.1 3 14 412 423 410 431 0.77 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF573-216 - 607 5.4e-14 51.5 83.6 14 19 0.00076 0.62 9.7 0.2 3 21 440 459 438 459 0.87 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF573-216 - 607 5.4e-14 51.5 83.6 15 19 3.7 3e+03 -2.1 0.3 3 12 468 477 467 479 0.87 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF573-216 - 607 5.4e-14 51.5 83.6 16 19 0.014 12 5.6 0.3 3 17 496 511 494 515 0.76 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF573-216 - 607 5.4e-14 51.5 83.6 17 19 0.01 8.1 6.1 0.1 3 20 524 542 522 543 0.77 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF573-216 - 607 5.4e-14 51.5 83.6 18 19 0.0056 4.6 6.9 0.1 3 20 552 570 550 571 0.82 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF573-216 - 607 5.4e-14 51.5 83.6 19 19 0.0089 7.3 6.3 0.1 3 12 580 589 578 599 0.87 Ubiquitin-Binding Zinc Finger XPA_N PF01286.18 32 ZNF573-216 - 607 3.8e-13 49.2 81.2 1 19 0.028 23 5.1 0.5 3 13 77 87 76 91 0.86 XPA protein N-terminal XPA_N PF01286.18 32 ZNF573-216 - 607 3.8e-13 49.2 81.2 2 19 0.0072 5.9 7.0 0.1 3 13 105 115 103 120 0.84 XPA protein N-terminal XPA_N PF01286.18 32 ZNF573-216 - 607 3.8e-13 49.2 81.2 3 19 0.012 9.9 6.3 0.1 3 13 133 143 131 149 0.83 XPA protein N-terminal XPA_N PF01286.18 32 ZNF573-216 - 607 3.8e-13 49.2 81.2 4 19 0.1 84 3.3 0.1 3 11 161 169 160 172 0.90 XPA protein N-terminal XPA_N PF01286.18 32 ZNF573-216 - 607 3.8e-13 49.2 81.2 5 19 0.022 18 5.5 0.1 3 12 189 198 187 200 0.88 XPA protein N-terminal XPA_N PF01286.18 32 ZNF573-216 - 607 3.8e-13 49.2 81.2 6 19 0.0067 5.4 7.1 0.1 3 12 217 226 215 234 0.87 XPA protein N-terminal XPA_N PF01286.18 32 ZNF573-216 - 607 3.8e-13 49.2 81.2 7 19 0.037 30 4.8 0.1 3 11 245 253 243 255 0.88 XPA protein N-terminal XPA_N PF01286.18 32 ZNF573-216 - 607 3.8e-13 49.2 81.2 8 19 0.078 64 3.7 0.1 3 13 273 283 271 289 0.78 XPA protein N-terminal XPA_N PF01286.18 32 ZNF573-216 - 607 3.8e-13 49.2 81.2 9 19 0.034 28 4.9 0.5 3 12 301 310 299 311 0.89 XPA protein N-terminal XPA_N PF01286.18 32 ZNF573-216 - 607 3.8e-13 49.2 81.2 10 19 0.23 1.9e+02 2.2 0.2 3 18 329 345 328 346 0.73 XPA protein N-terminal XPA_N PF01286.18 32 ZNF573-216 - 607 3.8e-13 49.2 81.2 11 19 0.012 9.9 6.3 0.1 3 12 357 366 355 371 0.90 XPA protein N-terminal XPA_N PF01286.18 32 ZNF573-216 - 607 3.8e-13 49.2 81.2 12 19 0.094 77 3.5 1.5 3 12 385 394 384 395 0.90 XPA protein N-terminal XPA_N PF01286.18 32 ZNF573-216 - 607 3.8e-13 49.2 81.2 13 19 0.12 97 3.1 0.2 3 10 413 420 412 424 0.87 XPA protein N-terminal XPA_N PF01286.18 32 ZNF573-216 - 607 3.8e-13 49.2 81.2 14 19 0.0073 5.9 7.0 0.1 3 12 441 450 439 457 0.88 XPA protein N-terminal XPA_N PF01286.18 32 ZNF573-216 - 607 3.8e-13 49.2 81.2 15 19 0.36 3e+02 1.6 0.2 19 27 467 475 465 477 0.74 XPA protein N-terminal XPA_N PF01286.18 32 ZNF573-216 - 607 3.8e-13 49.2 81.2 16 19 0.0033 2.7 8.1 0.1 3 14 497 508 495 513 0.88 XPA protein N-terminal XPA_N PF01286.18 32 ZNF573-216 - 607 3.8e-13 49.2 81.2 17 19 0.0095 7.8 6.6 0.1 3 12 525 534 523 541 0.89 XPA protein N-terminal XPA_N PF01286.18 32 ZNF573-216 - 607 3.8e-13 49.2 81.2 18 19 0.0093 7.6 6.7 0.1 3 12 553 562 551 568 0.89 XPA protein N-terminal XPA_N PF01286.18 32 ZNF573-216 - 607 3.8e-13 49.2 81.2 19 19 0.089 73 3.5 0.0 3 11 581 589 579 591 0.89 XPA protein N-terminal C1_4 PF07975.12 55 ZNF573-216 - 607 1.1e-08 35.2 91.5 1 18 0.006 4.9 7.5 1.0 21 48 71 98 56 100 0.73 TFIIH C1-like domain C1_4 PF07975.12 55 ZNF573-216 - 607 1.1e-08 35.2 91.5 2 18 0.018 15 5.9 5.0 1 48 77 126 77 129 0.79 TFIIH C1-like domain C1_4 PF07975.12 55 ZNF573-216 - 607 1.1e-08 35.2 91.5 3 18 0.0092 7.5 6.9 2.0 1 49 105 155 105 157 0.85 TFIIH C1-like domain C1_4 PF07975.12 55 ZNF573-216 - 607 1.1e-08 35.2 91.5 4 18 9.2e-05 0.075 13.3 2.5 1 49 133 183 133 186 0.92 TFIIH C1-like domain C1_4 PF07975.12 55 ZNF573-216 - 607 1.1e-08 35.2 91.5 5 18 0.071 58 4.0 0.1 26 49 188 211 183 214 0.89 TFIIH C1-like domain C1_4 PF07975.12 55 ZNF573-216 - 607 1.1e-08 35.2 91.5 6 18 0.03 25 5.2 2.1 2 48 218 266 217 269 0.81 TFIIH C1-like domain C1_4 PF07975.12 55 ZNF573-216 - 607 1.1e-08 35.2 91.5 7 18 0.0092 7.5 6.9 1.2 2 48 246 294 245 297 0.81 TFIIH C1-like domain C1_4 PF07975.12 55 ZNF573-216 - 607 1.1e-08 35.2 91.5 8 18 0.008 6.5 7.1 0.6 25 49 299 323 290 325 0.85 TFIIH C1-like domain C1_4 PF07975.12 55 ZNF573-216 - 607 1.1e-08 35.2 91.5 9 18 0.00053 0.43 10.8 3.2 1 49 301 351 301 354 0.86 TFIIH C1-like domain C1_4 PF07975.12 55 ZNF573-216 - 607 1.1e-08 35.2 91.5 10 18 0.0066 5.4 7.3 2.3 1 48 329 378 329 381 0.76 TFIIH C1-like domain C1_4 PF07975.12 55 ZNF573-216 - 607 1.1e-08 35.2 91.5 11 18 0.0039 3.2 8.1 4.5 2 49 358 407 357 409 0.74 TFIIH C1-like domain C1_4 PF07975.12 55 ZNF573-216 - 607 1.1e-08 35.2 91.5 12 18 0.0047 3.9 7.8 2.7 1 45 385 431 385 436 0.76 TFIIH C1-like domain C1_4 PF07975.12 55 ZNF573-216 - 607 1.1e-08 35.2 91.5 13 18 0.0041 3.4 8.0 2.5 2 49 414 463 413 465 0.80 TFIIH C1-like domain C1_4 PF07975.12 55 ZNF573-216 - 607 1.1e-08 35.2 91.5 14 18 0.016 13 6.1 4.5 2 49 442 491 441 493 0.77 TFIIH C1-like domain C1_4 PF07975.12 55 ZNF573-216 - 607 1.1e-08 35.2 91.5 15 18 0.036 29 5.0 3.9 1 48 469 518 469 519 0.83 TFIIH C1-like domain C1_4 PF07975.12 55 ZNF573-216 - 607 1.1e-08 35.2 91.5 16 18 0.01 8.5 6.7 2.9 1 48 497 546 497 549 0.79 TFIIH C1-like domain C1_4 PF07975.12 55 ZNF573-216 - 607 1.1e-08 35.2 91.5 17 18 0.003 2.5 8.4 1.8 2 49 526 575 525 577 0.80 TFIIH C1-like domain C1_4 PF07975.12 55 ZNF573-216 - 607 1.1e-08 35.2 91.5 18 18 0.0099 8.1 6.8 1.2 1 48 553 602 553 605 0.79 TFIIH C1-like domain zinc_ribbon_15 PF17032.5 86 ZNF573-216 - 607 2.9e-08 34.3 80.6 1 13 0.076 62 4.4 6.3 31 79 69 117 45 146 0.79 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF573-216 - 607 2.9e-08 34.3 80.6 2 13 0.0081 6.6 7.6 1.5 34 74 128 168 122 174 0.84 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF573-216 - 607 2.9e-08 34.3 80.6 3 13 0.0096 7.8 7.3 1.0 32 76 154 198 150 203 0.81 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF573-216 - 607 2.9e-08 34.3 80.6 4 13 0.0041 3.3 8.5 1.1 34 77 184 227 171 231 0.82 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF573-216 - 607 2.9e-08 34.3 80.6 5 13 0.00045 0.37 11.6 1.6 32 75 210 253 205 260 0.87 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF573-216 - 607 2.9e-08 34.3 80.6 6 13 0.0037 3 8.7 1.4 33 75 239 281 232 287 0.82 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF573-216 - 607 2.9e-08 34.3 80.6 7 13 0.083 67 4.3 2.1 32 75 266 309 262 314 0.79 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF573-216 - 607 2.9e-08 34.3 80.6 8 13 0.0012 0.99 10.2 1.5 24 76 286 338 279 343 0.83 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF573-216 - 607 2.9e-08 34.3 80.6 9 13 0.015 12 6.7 8.0 30 74 320 364 300 368 0.84 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF573-216 - 607 2.9e-08 34.3 80.6 10 13 0.0076 6.2 7.6 2.8 30 76 376 422 370 430 0.85 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF573-216 - 607 2.9e-08 34.3 80.6 11 13 0.0031 2.5 8.9 1.9 30 75 432 477 426 483 0.85 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF573-216 - 607 2.9e-08 34.3 80.6 12 13 0.0014 1.2 10.0 2.4 32 75 490 533 483 538 0.87 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF573-216 - 607 2.9e-08 34.3 80.6 13 13 0.0022 1.8 9.4 1.3 33 75 547 589 538 594 0.84 zinc-ribbon family zf-C2H2_11 PF16622.5 29 ZNF573-216 - 607 5.5e-08 32.4 86.5 1 19 0.19 1.6e+02 2.2 1.4 7 20 78 91 76 98 0.79 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF573-216 - 607 5.5e-08 32.4 86.5 2 19 0.043 35 4.3 0.2 6 23 105 122 103 125 0.80 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF573-216 - 607 5.5e-08 32.4 86.5 3 19 0.015 12 5.7 0.1 6 23 133 150 130 153 0.81 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF573-216 - 607 5.5e-08 32.4 86.5 4 19 0.025 20 5.0 0.1 3 14 158 169 157 176 0.75 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF573-216 - 607 5.5e-08 32.4 86.5 5 19 0.0017 1.4 8.7 0.4 6 25 189 208 187 210 0.86 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF573-216 - 607 5.5e-08 32.4 86.5 6 19 0.044 36 4.2 0.1 5 15 216 226 213 235 0.83 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF573-216 - 607 5.5e-08 32.4 86.5 7 19 4.2 3.4e+03 -2.1 0.2 7 14 246 253 241 253 0.85 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF573-216 - 607 5.5e-08 32.4 86.5 8 19 0.17 1.4e+02 2.3 0.1 6 16 273 283 271 293 0.87 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF573-216 - 607 5.5e-08 32.4 86.5 9 19 0.0058 4.7 7.1 0.1 6 26 301 321 299 322 0.90 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF573-216 - 607 5.5e-08 32.4 86.5 10 19 0.12 97 2.9 0.6 7 16 330 339 328 347 0.78 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF573-216 - 607 5.5e-08 32.4 86.5 11 19 0.0031 2.6 7.9 0.1 6 26 357 377 354 378 0.91 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF573-216 - 607 5.5e-08 32.4 86.5 12 19 0.0071 5.8 6.8 0.3 7 26 386 405 384 406 0.90 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF573-216 - 607 5.5e-08 32.4 86.5 13 19 0.025 20 5.0 0.1 7 24 414 431 412 433 0.84 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF573-216 - 607 5.5e-08 32.4 86.5 14 19 0.00011 0.086 12.6 0.2 5 26 440 461 437 462 0.92 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF573-216 - 607 5.5e-08 32.4 86.5 15 19 5.4 4.4e+03 -2.4 0.2 9 13 469 473 468 478 0.80 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF573-216 - 607 5.5e-08 32.4 86.5 16 19 0.42 3.4e+02 1.1 0.1 5 14 496 505 492 517 0.76 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF573-216 - 607 5.5e-08 32.4 86.5 17 19 0.13 1.1e+02 2.7 0.0 6 26 525 545 520 546 0.81 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF573-216 - 607 5.5e-08 32.4 86.5 18 19 0.028 23 4.9 0.0 6 26 553 573 551 574 0.88 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF573-216 - 607 5.5e-08 32.4 86.5 19 19 0.26 2.2e+02 1.7 0.5 7 26 582 601 580 602 0.86 zinc-finger C2H2-type DUF3850 PF12961.7 77 ZNF573-216 - 607 2.2e-07 30.8 4.1 1 9 0.023 19 5.4 0.0 2 39 57 94 56 113 0.90 Domain of unknown function (DUF3850) DUF3850 PF12961.7 77 ZNF573-216 - 607 2.2e-07 30.8 4.1 2 9 0.24 2e+02 2.1 0.0 15 59 126 171 118 177 0.73 Domain of unknown function (DUF3850) DUF3850 PF12961.7 77 ZNF573-216 - 607 2.2e-07 30.8 4.1 3 9 0.036 29 4.8 0.0 12 40 179 207 174 226 0.83 Domain of unknown function (DUF3850) DUF3850 PF12961.7 77 ZNF573-216 - 607 2.2e-07 30.8 4.1 4 9 0.56 4.5e+02 1.0 0.0 12 38 263 289 258 310 0.72 Domain of unknown function (DUF3850) DUF3850 PF12961.7 77 ZNF573-216 - 607 2.2e-07 30.8 4.1 5 9 0.094 77 3.4 0.0 12 36 319 343 309 361 0.82 Domain of unknown function (DUF3850) DUF3850 PF12961.7 77 ZNF573-216 - 607 2.2e-07 30.8 4.1 6 9 0.93 7.6e+02 0.2 0.0 10 26 373 389 369 395 0.79 Domain of unknown function (DUF3850) DUF3850 PF12961.7 77 ZNF573-216 - 607 2.2e-07 30.8 4.1 7 9 0.064 52 4.0 0.0 12 37 403 428 392 445 0.82 Domain of unknown function (DUF3850) DUF3850 PF12961.7 77 ZNF573-216 - 607 2.2e-07 30.8 4.1 8 9 5.1 4.1e+03 -2.1 0.0 12 33 487 508 484 529 0.77 Domain of unknown function (DUF3850) DUF3850 PF12961.7 77 ZNF573-216 - 607 2.2e-07 30.8 4.1 9 9 6.9 5.6e+03 -2.5 0.0 13 31 544 562 540 591 0.65 Domain of unknown function (DUF3850) # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF573-216.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF573-216.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF573-216.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF573-216.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF573-216.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:09:44 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZNF573-217 - 665 5.2e-132 425.0 158.8 1 20 0.0018 1.4 9.4 2.9 12 26 131 145 129 145 0.89 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF573-217 - 665 5.2e-132 425.0 158.8 2 20 4.2e-06 0.0034 17.7 1.1 5 25 152 172 148 173 0.89 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF573-217 - 665 5.2e-132 425.0 158.8 3 20 8.4e-11 6.9e-08 32.6 1.0 2 25 177 200 176 201 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF573-217 - 665 5.2e-132 425.0 158.8 4 20 1.6e-09 1.3e-06 28.5 0.6 2 24 205 227 204 229 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF573-217 - 665 5.2e-132 425.0 158.8 5 20 7.1e-09 5.8e-06 26.5 0.3 3 25 234 256 232 257 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF573-217 - 665 5.2e-132 425.0 158.8 6 20 1.6e-11 1.3e-08 34.9 2.9 1 25 260 284 260 285 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF573-217 - 665 5.2e-132 425.0 158.8 7 20 3.2e-06 0.0026 18.1 0.4 1 25 288 312 288 313 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF573-217 - 665 5.2e-132 425.0 158.8 8 20 9.9e-11 8.1e-08 32.4 1.0 2 26 317 341 316 341 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF573-217 - 665 5.2e-132 425.0 158.8 9 20 3.9e-08 3.2e-05 24.2 2.6 5 25 348 368 345 368 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF573-217 - 665 5.2e-132 425.0 158.8 10 20 2.1e-10 1.7e-07 31.3 0.8 1 26 372 397 372 397 0.97 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF573-217 - 665 5.2e-132 425.0 158.8 11 20 1.1e-10 8.8e-08 32.2 2.3 2 25 401 424 400 424 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF573-217 - 665 5.2e-132 425.0 158.8 12 20 8.6e-08 7e-05 23.1 5.3 2 25 429 452 428 452 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF573-217 - 665 5.2e-132 425.0 158.8 13 20 8e-10 6.5e-07 29.5 0.4 1 26 456 481 456 481 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF573-217 - 665 5.2e-132 425.0 158.8 14 20 4e-11 3.3e-08 33.6 1.9 1 25 484 508 484 508 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF573-217 - 665 5.2e-132 425.0 158.8 15 20 1e-10 8.4e-08 32.3 1.7 2 25 513 536 512 536 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF573-217 - 665 5.2e-132 425.0 158.8 16 20 2.2e-09 1.8e-06 28.1 0.8 1 25 540 564 540 565 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF573-217 - 665 5.2e-132 425.0 158.8 17 20 7.6e-08 6.2e-05 23.2 1.8 1 25 568 592 568 592 0.97 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF573-217 - 665 5.2e-132 425.0 158.8 18 20 1.4e-10 1.1e-07 31.9 0.8 2 25 597 620 596 621 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF573-217 - 665 5.2e-132 425.0 158.8 19 20 1.9e-11 1.5e-08 34.6 0.6 1 25 624 648 624 649 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF573-217 - 665 5.2e-132 425.0 158.8 20 20 0.61 5e+02 1.4 0.2 1 11 652 662 652 664 0.86 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZNF573-217 - 665 1.4e-93 302.4 147.8 1 19 9.4e-05 0.077 13.5 4.3 1 23 134 156 134 156 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF573-217 - 665 1.4e-93 302.4 147.8 2 19 8.6e-07 0.0007 19.9 1.4 1 23 162 184 162 184 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF573-217 - 665 1.4e-93 302.4 147.8 3 19 3.1e-07 0.00025 21.3 1.0 1 23 190 212 190 212 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF573-217 - 665 1.4e-93 302.4 147.8 4 19 5.4e-06 0.0044 17.4 0.4 1 23 218 240 218 240 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF573-217 - 665 1.4e-93 302.4 147.8 5 19 1.6e-07 0.00013 22.2 0.3 1 23 246 268 246 268 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF573-217 - 665 1.4e-93 302.4 147.8 6 19 2.8e-08 2.3e-05 24.6 1.3 1 23 274 296 274 296 0.93 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF573-217 - 665 1.4e-93 302.4 147.8 7 19 1.2e-07 9.6e-05 22.6 1.1 1 23 302 324 302 324 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF573-217 - 665 1.4e-93 302.4 147.8 8 19 6.7e-07 0.00055 20.2 0.5 1 23 330 352 330 352 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF573-217 - 665 1.4e-93 302.4 147.8 9 19 1.1e-06 0.00091 19.6 2.3 1 23 358 380 358 380 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF573-217 - 665 1.4e-93 302.4 147.8 10 19 1.4e-06 0.0011 19.2 2.1 1 23 386 408 386 408 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF573-217 - 665 1.4e-93 302.4 147.8 11 19 1.2e-06 0.001 19.4 0.5 1 23 414 436 414 436 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF573-217 - 665 1.4e-93 302.4 147.8 12 19 1.6e-06 0.0013 19.0 2.3 1 23 442 464 442 464 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF573-217 - 665 1.4e-93 302.4 147.8 13 19 2.8e-07 0.00023 21.4 0.3 1 23 470 492 470 492 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF573-217 - 665 1.4e-93 302.4 147.8 14 19 1.1e-06 0.00093 19.5 2.6 1 23 498 520 498 520 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF573-217 - 665 1.4e-93 302.4 147.8 15 19 7e-06 0.0057 17.1 2.4 1 23 526 548 526 548 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF573-217 - 665 1.4e-93 302.4 147.8 16 19 2.7e-09 2.2e-06 27.8 2.2 1 23 554 576 554 576 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF573-217 - 665 1.4e-93 302.4 147.8 17 19 3.9e-07 0.00032 21.0 0.6 1 23 582 604 582 604 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF573-217 - 665 1.4e-93 302.4 147.8 18 19 3.1e-09 2.6e-06 27.6 0.1 1 23 610 632 610 632 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF573-217 - 665 1.4e-93 302.4 147.8 19 19 5.4e-08 4.4e-05 23.7 0.5 1 23 638 660 638 660 0.99 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZNF573-217 - 665 2.1e-55 180.5 138.6 1 19 0.00064 0.52 11.3 3.0 1 23 134 156 134 157 0.84 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF573-217 - 665 2.1e-55 180.5 138.6 2 19 7.6e-05 0.062 14.2 1.0 1 23 162 184 162 185 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF573-217 - 665 2.1e-55 180.5 138.6 3 19 1.3e-05 0.01 16.6 0.8 1 23 190 212 190 213 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF573-217 - 665 2.1e-55 180.5 138.6 4 19 0.00079 0.65 11.0 0.4 1 23 218 240 218 241 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF573-217 - 665 2.1e-55 180.5 138.6 5 19 0.0001 0.084 13.8 0.4 1 23 246 268 246 269 0.91 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF573-217 - 665 2.1e-55 180.5 138.6 6 19 0.00016 0.13 13.2 1.0 1 19 274 292 274 296 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF573-217 - 665 2.1e-55 180.5 138.6 7 19 0.00017 0.14 13.1 0.9 1 23 302 324 302 325 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF573-217 - 665 2.1e-55 180.5 138.6 8 19 0.00047 0.38 11.7 0.5 1 23 330 352 330 353 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF573-217 - 665 2.1e-55 180.5 138.6 9 19 0.00011 0.087 13.7 1.2 1 23 358 380 358 381 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF573-217 - 665 2.1e-55 180.5 138.6 10 19 2.3e-06 0.0019 18.9 1.5 1 23 386 408 386 409 0.97 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF573-217 - 665 2.1e-55 180.5 138.6 11 19 2.4e-05 0.02 15.7 0.6 1 23 414 436 414 437 0.89 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF573-217 - 665 2.1e-55 180.5 138.6 12 19 0.00011 0.092 13.6 1.4 1 23 442 464 442 465 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF573-217 - 665 2.1e-55 180.5 138.6 13 19 8.8e-06 0.0072 17.1 0.3 1 23 470 492 470 493 0.97 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF573-217 - 665 2.1e-55 180.5 138.6 14 19 2.1e-05 0.017 15.9 1.9 1 23 498 520 498 521 0.87 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF573-217 - 665 2.1e-55 180.5 138.6 15 19 0.0015 1.2 10.2 1.5 1 23 526 548 526 549 0.89 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF573-217 - 665 2.1e-55 180.5 138.6 16 19 2.1e-05 0.017 15.9 1.4 1 23 554 576 554 577 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF573-217 - 665 2.1e-55 180.5 138.6 17 19 8e-05 0.065 14.1 0.5 1 23 582 604 582 605 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF573-217 - 665 2.1e-55 180.5 138.6 18 19 1.6e-05 0.013 16.3 0.2 1 23 610 632 610 633 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF573-217 - 665 2.1e-55 180.5 138.6 19 19 9.2e-06 0.0075 17.0 0.5 1 23 638 660 638 661 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF573-217 - 665 5.4e-53 176.1 145.5 1 20 0.21 1.7e+02 2.4 0.0 14 23 64 73 59 75 0.80 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF573-217 - 665 5.4e-53 176.1 145.5 2 20 0.00041 0.34 11.0 4.1 2 21 134 153 133 156 0.89 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF573-217 - 665 5.4e-53 176.1 145.5 3 20 4e-06 0.0033 17.4 2.0 2 22 162 182 162 186 0.90 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF573-217 - 665 5.4e-53 176.1 145.5 4 20 2.6e-06 0.0022 18.0 1.4 2 22 190 210 190 214 0.90 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF573-217 - 665 5.4e-53 176.1 145.5 5 20 0.017 14 5.9 0.3 2 11 218 227 217 229 0.92 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF573-217 - 665 5.4e-53 176.1 145.5 6 20 0.0011 0.9 9.6 0.6 2 20 246 264 246 269 0.78 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF573-217 - 665 5.4e-53 176.1 145.5 7 20 7.1e-05 0.058 13.4 0.6 2 20 274 292 274 292 0.83 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF573-217 - 665 5.4e-53 176.1 145.5 8 20 0.005 4 7.5 0.8 2 22 302 322 302 326 0.87 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF573-217 - 665 5.4e-53 176.1 145.5 9 20 0.0027 2.2 8.4 0.3 2 13 330 341 330 342 0.90 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF573-217 - 665 5.4e-53 176.1 145.5 10 20 1.6e-05 0.013 15.5 0.9 2 20 358 376 358 380 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF573-217 - 665 5.4e-53 176.1 145.5 11 20 2.3e-06 0.0019 18.2 2.9 2 24 386 408 385 411 0.95 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF573-217 - 665 5.4e-53 176.1 145.5 12 20 0.00064 0.53 10.4 1.0 2 12 414 424 414 436 0.86 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF573-217 - 665 5.4e-53 176.1 145.5 13 20 1e-05 0.0083 16.1 1.7 1 20 441 460 441 464 0.92 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF573-217 - 665 5.4e-53 176.1 145.5 14 20 3.8e-09 3.1e-06 27.0 0.6 2 24 470 492 469 495 0.95 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF573-217 - 665 5.4e-53 176.1 145.5 15 20 0.00047 0.38 10.8 1.1 2 12 498 508 498 509 0.95 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF573-217 - 665 5.4e-53 176.1 145.5 16 20 0.00019 0.16 12.0 0.7 2 21 526 545 526 551 0.86 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF573-217 - 665 5.4e-53 176.1 145.5 17 20 7.9e-05 0.064 13.3 1.0 2 20 554 572 554 578 0.82 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF573-217 - 665 5.4e-53 176.1 145.5 18 20 4.5e-05 0.036 14.1 1.9 2 22 582 602 582 605 0.87 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF573-217 - 665 5.4e-53 176.1 145.5 19 20 0.0001 0.085 12.9 0.3 2 20 610 628 610 634 0.83 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF573-217 - 665 5.4e-53 176.1 145.5 20 20 5.7e-08 4.6e-05 23.3 0.8 2 26 638 662 638 663 0.96 C2H2-type zinc finger KRAB PF01352.27 42 ZNF573-217 - 665 5.8e-26 89.9 0.2 1 1 1.5e-28 1.2e-25 88.9 0.2 1 42 27 68 27 68 0.99 KRAB box zf-C2H2_jaz PF12171.8 27 ZNF573-217 - 665 3.9e-25 87.5 89.1 1 19 0.029 24 5.4 0.8 2 20 134 152 133 152 0.89 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF573-217 - 665 3.9e-25 87.5 89.1 2 19 0.00034 0.27 11.5 0.1 2 22 162 182 161 182 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF573-217 - 665 3.9e-25 87.5 89.1 3 19 0.00046 0.37 11.1 0.0 2 22 190 210 189 210 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF573-217 - 665 3.9e-25 87.5 89.1 4 19 0.84 6.9e+02 0.7 0.4 2 22 218 238 217 238 0.86 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF573-217 - 665 3.9e-25 87.5 89.1 5 19 0.26 2.1e+02 2.4 0.0 2 12 246 256 245 265 0.90 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF573-217 - 665 3.9e-25 87.5 89.1 6 19 0.00027 0.22 11.8 0.1 2 20 274 292 273 292 0.95 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF573-217 - 665 3.9e-25 87.5 89.1 7 19 0.22 1.8e+02 2.6 0.0 2 22 302 322 301 322 0.91 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF573-217 - 665 3.9e-25 87.5 89.1 8 19 0.0025 2 8.8 0.0 2 22 330 350 329 350 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF573-217 - 665 3.9e-25 87.5 89.1 9 19 0.0098 8 6.9 0.3 2 11 358 367 357 378 0.88 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF573-217 - 665 3.9e-25 87.5 89.1 10 19 0.051 42 4.6 1.3 2 24 386 408 385 408 0.90 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF573-217 - 665 3.9e-25 87.5 89.1 11 19 0.13 1.1e+02 3.3 0.5 2 12 414 424 413 434 0.86 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF573-217 - 665 3.9e-25 87.5 89.1 12 19 0.0068 5.5 7.4 0.6 2 11 442 451 441 462 0.89 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF573-217 - 665 3.9e-25 87.5 89.1 13 19 0.00035 0.28 11.5 0.3 2 24 470 492 469 492 0.95 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF573-217 - 665 3.9e-25 87.5 89.1 14 19 0.0069 5.6 7.4 0.7 2 22 498 518 497 518 0.85 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF573-217 - 665 3.9e-25 87.5 89.1 15 19 0.013 11 6.5 0.5 2 11 526 535 525 536 0.91 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF573-217 - 665 3.9e-25 87.5 89.1 16 19 6.4e-05 0.052 13.9 0.1 2 21 554 573 553 574 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF573-217 - 665 3.9e-25 87.5 89.1 17 19 0.026 21 5.5 0.5 2 21 582 601 581 602 0.78 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF573-217 - 665 3.9e-25 87.5 89.1 18 19 3.1e-05 0.025 14.9 0.0 2 22 610 630 609 630 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF573-217 - 665 3.9e-25 87.5 89.1 19 19 0.017 14 6.1 0.0 2 22 638 658 637 658 0.90 Zinc-finger double-stranded RNA-binding Zn-ribbon_8 PF09723.10 40 ZNF573-217 - 665 8.8e-23 80.1 105.4 1 16 0.00077 0.63 10.2 5.2 6 37 134 172 133 173 0.80 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF573-217 - 665 8.8e-23 80.1 105.4 2 16 0.00013 0.1 12.7 5.9 6 36 162 199 161 200 0.90 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF573-217 - 665 8.8e-23 80.1 105.4 3 16 3e-05 0.025 14.7 4.1 6 34 190 225 189 228 0.94 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF573-217 - 665 8.8e-23 80.1 105.4 4 16 6.3e-06 0.0052 16.9 4.3 6 38 246 285 245 287 0.91 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF573-217 - 665 8.8e-23 80.1 105.4 5 16 4.9e-06 0.004 17.2 3.5 6 38 274 313 273 313 0.83 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF573-217 - 665 8.8e-23 80.1 105.4 6 16 4.4e-05 0.036 14.2 2.6 6 34 302 337 301 343 0.92 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF573-217 - 665 8.8e-23 80.1 105.4 7 16 0.00041 0.33 11.1 4.3 6 35 358 394 357 397 0.84 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF573-217 - 665 8.8e-23 80.1 105.4 8 16 0.00071 0.58 10.3 5.6 6 34 386 421 384 426 0.90 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF573-217 - 665 8.8e-23 80.1 105.4 9 16 0.0097 7.9 6.7 0.8 6 16 414 424 413 436 0.84 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF573-217 - 665 8.8e-23 80.1 105.4 10 16 0.001 0.84 9.8 3.4 6 34 442 477 440 482 0.85 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF573-217 - 665 8.8e-23 80.1 105.4 11 16 0.0057 4.6 7.4 5.7 6 34 470 505 469 507 0.82 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF573-217 - 665 8.8e-23 80.1 105.4 12 16 0.00038 0.31 11.2 4.1 6 34 498 533 497 535 0.91 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF573-217 - 665 8.8e-23 80.1 105.4 13 16 1.4e-05 0.012 15.7 3.4 6 38 526 565 525 567 0.88 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF573-217 - 665 8.8e-23 80.1 105.4 14 16 7.7e-06 0.0063 16.6 3.7 6 38 582 621 581 623 0.92 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF573-217 - 665 8.8e-23 80.1 105.4 15 16 0.00011 0.086 13.0 4.7 6 36 610 647 609 649 0.84 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF573-217 - 665 8.8e-23 80.1 105.4 16 16 0.0096 7.8 6.7 0.2 6 16 638 648 637 661 0.83 Zinc ribbon domain zf_UBZ PF18439.1 32 ZNF573-217 - 665 3.5e-13 48.9 83.6 1 19 0.012 9.4 5.9 0.3 3 17 134 149 132 157 0.76 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF573-217 - 665 3.5e-13 48.9 83.6 2 19 0.0082 6.7 6.4 0.1 3 21 162 181 160 185 0.79 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF573-217 - 665 3.5e-13 48.9 83.6 3 19 0.008 6.5 6.4 0.1 3 21 190 209 188 213 0.81 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF573-217 - 665 3.5e-13 48.9 83.6 4 19 0.039 32 4.2 0.1 2 12 217 227 216 236 0.88 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF573-217 - 665 3.5e-13 48.9 83.6 5 19 0.04 32 4.2 0.1 3 13 246 256 244 261 0.87 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF573-217 - 665 3.5e-13 48.9 83.6 6 19 0.0013 1 9.0 0.1 3 20 274 292 272 296 0.86 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF573-217 - 665 3.5e-13 48.9 83.6 7 19 0.0095 7.8 6.2 0.1 3 12 302 311 300 321 0.80 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF573-217 - 665 3.5e-13 48.9 83.6 8 19 0.12 98 2.7 0.2 3 10 330 337 328 343 0.86 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF573-217 - 665 3.5e-13 48.9 83.6 9 19 0.029 23 4.7 0.2 3 13 358 368 356 377 0.79 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF573-217 - 665 3.5e-13 48.9 83.6 10 19 0.064 52 3.6 0.1 3 13 386 396 384 405 0.79 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF573-217 - 665 3.5e-13 48.9 83.6 11 19 0.015 12 5.6 0.1 3 14 414 425 412 433 0.80 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF573-217 - 665 3.5e-13 48.9 83.6 12 19 0.023 19 4.9 0.3 2 13 441 452 440 461 0.79 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF573-217 - 665 3.5e-13 48.9 83.6 13 19 0.031 25 4.5 0.1 3 14 470 481 468 489 0.77 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF573-217 - 665 3.5e-13 48.9 83.6 14 19 0.00084 0.68 9.6 0.2 3 21 498 517 496 517 0.87 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF573-217 - 665 3.5e-13 48.9 83.6 15 19 4.1 3.3e+03 -2.2 0.3 3 12 526 535 525 537 0.87 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF573-217 - 665 3.5e-13 48.9 83.6 16 19 0.016 13 5.5 0.3 3 17 554 569 552 573 0.76 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF573-217 - 665 3.5e-13 48.9 83.6 17 19 0.011 9 6.0 0.1 3 20 582 600 580 601 0.77 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF573-217 - 665 3.5e-13 48.9 83.6 18 19 0.0062 5.1 6.8 0.1 3 20 610 628 608 629 0.82 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF573-217 - 665 3.5e-13 48.9 83.6 19 19 0.0099 8 6.1 0.1 3 12 638 647 636 657 0.87 Ubiquitin-Binding Zinc Finger XPA_N PF01286.18 32 ZNF573-217 - 665 2.5e-12 46.6 81.2 1 19 0.031 26 5.0 0.5 3 13 135 145 134 149 0.86 XPA protein N-terminal XPA_N PF01286.18 32 ZNF573-217 - 665 2.5e-12 46.6 81.2 2 19 0.008 6.5 6.9 0.1 3 13 163 173 161 178 0.84 XPA protein N-terminal XPA_N PF01286.18 32 ZNF573-217 - 665 2.5e-12 46.6 81.2 3 19 0.013 11 6.2 0.1 3 13 191 201 189 207 0.83 XPA protein N-terminal XPA_N PF01286.18 32 ZNF573-217 - 665 2.5e-12 46.6 81.2 4 19 0.11 93 3.2 0.1 3 11 219 227 218 230 0.90 XPA protein N-terminal XPA_N PF01286.18 32 ZNF573-217 - 665 2.5e-12 46.6 81.2 5 19 0.024 20 5.4 0.1 3 12 247 256 245 258 0.88 XPA protein N-terminal XPA_N PF01286.18 32 ZNF573-217 - 665 2.5e-12 46.6 81.2 6 19 0.0074 6 7.0 0.1 3 12 275 284 273 292 0.87 XPA protein N-terminal XPA_N PF01286.18 32 ZNF573-217 - 665 2.5e-12 46.6 81.2 7 19 0.041 33 4.6 0.1 3 11 303 311 301 313 0.88 XPA protein N-terminal XPA_N PF01286.18 32 ZNF573-217 - 665 2.5e-12 46.6 81.2 8 19 0.087 71 3.6 0.1 3 13 331 341 329 347 0.78 XPA protein N-terminal XPA_N PF01286.18 32 ZNF573-217 - 665 2.5e-12 46.6 81.2 9 19 0.038 31 4.7 0.5 3 12 359 368 357 369 0.89 XPA protein N-terminal XPA_N PF01286.18 32 ZNF573-217 - 665 2.5e-12 46.6 81.2 10 19 0.26 2.1e+02 2.1 0.2 3 18 387 403 386 404 0.73 XPA protein N-terminal XPA_N PF01286.18 32 ZNF573-217 - 665 2.5e-12 46.6 81.2 11 19 0.013 11 6.2 0.1 3 12 415 424 413 429 0.90 XPA protein N-terminal XPA_N PF01286.18 32 ZNF573-217 - 665 2.5e-12 46.6 81.2 12 19 0.1 85 3.3 1.5 3 12 443 452 442 453 0.90 XPA protein N-terminal XPA_N PF01286.18 32 ZNF573-217 - 665 2.5e-12 46.6 81.2 13 19 0.13 1.1e+02 3.0 0.2 3 10 471 478 470 482 0.87 XPA protein N-terminal XPA_N PF01286.18 32 ZNF573-217 - 665 2.5e-12 46.6 81.2 14 19 0.0081 6.6 6.9 0.1 3 12 499 508 497 515 0.88 XPA protein N-terminal XPA_N PF01286.18 32 ZNF573-217 - 665 2.5e-12 46.6 81.2 15 19 0.4 3.3e+02 1.4 0.2 19 27 525 533 523 535 0.74 XPA protein N-terminal XPA_N PF01286.18 32 ZNF573-217 - 665 2.5e-12 46.6 81.2 16 19 0.0036 3 8.0 0.1 3 14 555 566 553 571 0.88 XPA protein N-terminal XPA_N PF01286.18 32 ZNF573-217 - 665 2.5e-12 46.6 81.2 17 19 0.011 8.6 6.5 0.1 3 12 583 592 581 599 0.89 XPA protein N-terminal XPA_N PF01286.18 32 ZNF573-217 - 665 2.5e-12 46.6 81.2 18 19 0.01 8.4 6.5 0.1 3 12 611 620 609 626 0.89 XPA protein N-terminal XPA_N PF01286.18 32 ZNF573-217 - 665 2.5e-12 46.6 81.2 19 19 0.099 81 3.4 0.0 3 11 639 647 637 649 0.89 XPA protein N-terminal C1_4 PF07975.12 55 ZNF573-217 - 665 3.4e-08 33.6 91.0 1 16 0.0064 5.2 7.4 0.9 21 48 129 156 114 159 0.74 TFIIH C1-like domain C1_4 PF07975.12 55 ZNF573-217 - 665 3.4e-08 33.6 91.0 2 16 0.017 14 6.0 4.7 1 48 135 184 135 187 0.79 TFIIH C1-like domain C1_4 PF07975.12 55 ZNF573-217 - 665 3.4e-08 33.6 91.0 3 16 0.0001 0.084 13.1 2.5 1 49 191 241 191 243 0.92 TFIIH C1-like domain C1_4 PF07975.12 55 ZNF573-217 - 665 3.4e-08 33.6 91.0 4 16 0.037 30 4.9 1.6 1 36 247 284 247 299 0.75 TFIIH C1-like domain C1_4 PF07975.12 55 ZNF573-217 - 665 3.4e-08 33.6 91.0 5 16 0.035 29 5.0 2.1 2 48 276 324 275 327 0.81 TFIIH C1-like domain C1_4 PF07975.12 55 ZNF573-217 - 665 3.4e-08 33.6 91.0 6 16 0.01 8.3 6.7 1.2 2 48 304 352 303 355 0.81 TFIIH C1-like domain C1_4 PF07975.12 55 ZNF573-217 - 665 3.4e-08 33.6 91.0 7 16 0.00058 0.47 10.7 3.1 1 49 359 409 359 412 0.86 TFIIH C1-like domain C1_4 PF07975.12 55 ZNF573-217 - 665 3.4e-08 33.6 91.0 8 16 0.0074 6 7.2 2.3 1 48 387 436 387 440 0.77 TFIIH C1-like domain C1_4 PF07975.12 55 ZNF573-217 - 665 3.4e-08 33.6 91.0 9 16 0.0051 4.2 7.7 4.7 2 49 416 465 415 467 0.74 TFIIH C1-like domain C1_4 PF07975.12 55 ZNF573-217 - 665 3.4e-08 33.6 91.0 10 16 0.0063 5.1 7.4 3.0 1 45 443 489 443 494 0.76 TFIIH C1-like domain C1_4 PF07975.12 55 ZNF573-217 - 665 3.4e-08 33.6 91.0 11 16 0.0042 3.4 8.0 2.4 2 49 472 521 471 524 0.81 TFIIH C1-like domain C1_4 PF07975.12 55 ZNF573-217 - 665 3.4e-08 33.6 91.0 12 16 0.017 14 6.0 4.3 2 49 500 549 499 550 0.76 TFIIH C1-like domain C1_4 PF07975.12 55 ZNF573-217 - 665 3.4e-08 33.6 91.0 13 16 0.04 33 4.8 3.9 1 48 527 576 527 577 0.83 TFIIH C1-like domain C1_4 PF07975.12 55 ZNF573-217 - 665 3.4e-08 33.6 91.0 14 16 0.012 9.4 6.6 2.9 1 48 555 604 555 607 0.79 TFIIH C1-like domain C1_4 PF07975.12 55 ZNF573-217 - 665 3.4e-08 33.6 91.0 15 16 0.0032 2.6 8.3 1.7 2 49 584 633 583 636 0.81 TFIIH C1-like domain C1_4 PF07975.12 55 ZNF573-217 - 665 3.4e-08 33.6 91.0 16 16 0.012 9.5 6.5 1.2 1 48 611 660 611 663 0.79 TFIIH C1-like domain zinc_ribbon_15 PF17032.5 86 ZNF573-217 - 665 1.1e-07 32.5 80.9 1 12 0.0056 4.6 8.1 2.2 30 79 126 175 103 179 0.81 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF573-217 - 665 1.1e-07 32.5 80.9 2 12 0.035 29 5.5 4.3 39 74 191 226 181 260 0.57 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF573-217 - 665 1.1e-07 32.5 80.9 3 12 0.0046 3.8 8.3 1.0 35 77 243 285 232 289 0.82 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF573-217 - 665 1.1e-07 32.5 80.9 4 12 0.00054 0.44 11.3 1.6 32 75 268 311 264 317 0.87 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF573-217 - 665 1.1e-07 32.5 80.9 5 12 0.071 58 4.5 5.4 35 76 299 340 294 372 0.79 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF573-217 - 665 1.1e-07 32.5 80.9 6 12 0.018 15 6.4 5.6 24 77 344 397 332 404 0.82 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF573-217 - 665 1.1e-07 32.5 80.9 7 12 0.00052 0.42 11.4 2.4 32 74 380 422 377 426 0.89 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF573-217 - 665 1.1e-07 32.5 80.9 8 12 0.0086 7 7.5 2.8 30 76 434 480 427 488 0.86 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF573-217 - 665 1.1e-07 32.5 80.9 9 12 0.00022 0.18 12.6 1.9 31 75 463 507 459 512 0.90 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF573-217 - 665 1.1e-07 32.5 80.9 10 12 0.0038 3.1 8.6 2.0 30 75 490 535 484 541 0.85 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF573-217 - 665 1.1e-07 32.5 80.9 11 12 0.0017 1.4 9.7 2.5 32 75 548 591 541 596 0.87 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF573-217 - 665 1.1e-07 32.5 80.9 12 12 0.0024 2 9.2 1.3 33 75 605 647 596 652 0.84 zinc-ribbon family DUF3850 PF12961.7 77 ZNF573-217 - 665 3e-07 30.4 3.4 1 9 0.026 21 5.2 0.0 2 39 115 152 114 170 0.90 Domain of unknown function (DUF3850) DUF3850 PF12961.7 77 ZNF573-217 - 665 3e-07 30.4 3.4 2 9 0.25 2.1e+02 2.1 0.0 15 59 184 229 178 238 0.74 Domain of unknown function (DUF3850) DUF3850 PF12961.7 77 ZNF573-217 - 665 3e-07 30.4 3.4 3 9 0.04 33 4.6 0.0 12 40 237 265 232 284 0.83 Domain of unknown function (DUF3850) DUF3850 PF12961.7 77 ZNF573-217 - 665 3e-07 30.4 3.4 4 9 0.62 5.1e+02 0.8 0.0 12 38 321 347 316 368 0.72 Domain of unknown function (DUF3850) DUF3850 PF12961.7 77 ZNF573-217 - 665 3e-07 30.4 3.4 5 9 0.11 88 3.2 0.0 12 36 377 401 366 415 0.82 Domain of unknown function (DUF3850) DUF3850 PF12961.7 77 ZNF573-217 - 665 3e-07 30.4 3.4 6 9 0.99 8e+02 0.2 0.0 10 26 431 447 425 453 0.80 Domain of unknown function (DUF3850) DUF3850 PF12961.7 77 ZNF573-217 - 665 3e-07 30.4 3.4 7 9 0.071 58 3.8 0.0 12 37 461 486 450 503 0.82 Domain of unknown function (DUF3850) DUF3850 PF12961.7 77 ZNF573-217 - 665 3e-07 30.4 3.4 8 9 6 4.9e+03 -2.3 0.0 12 33 545 566 542 586 0.79 Domain of unknown function (DUF3850) DUF3850 PF12961.7 77 ZNF573-217 - 665 3e-07 30.4 3.4 9 9 7.7 6.3e+03 -2.7 0.0 13 31 602 620 598 649 0.65 Domain of unknown function (DUF3850) zf-C2H2_11 PF16622.5 29 ZNF573-217 - 665 3.4e-07 29.9 86.5 1 19 0.21 1.7e+02 2.0 1.4 7 20 136 149 134 156 0.79 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF573-217 - 665 3.4e-07 29.9 86.5 2 19 0.047 38 4.1 0.2 6 23 163 180 161 183 0.80 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF573-217 - 665 3.4e-07 29.9 86.5 3 19 0.017 13 5.6 0.1 6 23 191 208 188 211 0.81 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF573-217 - 665 3.4e-07 29.9 86.5 4 19 0.027 22 4.9 0.1 3 14 216 227 215 234 0.75 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF573-217 - 665 3.4e-07 29.9 86.5 5 19 0.0019 1.6 8.6 0.4 6 25 247 266 245 268 0.86 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF573-217 - 665 3.4e-07 29.9 86.5 6 19 0.048 39 4.1 0.1 5 15 274 284 271 293 0.83 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF573-217 - 665 3.4e-07 29.9 86.5 7 19 4.6 3.8e+03 -2.2 0.2 7 14 304 311 299 311 0.85 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF573-217 - 665 3.4e-07 29.9 86.5 8 19 0.19 1.6e+02 2.2 0.1 6 16 331 341 329 351 0.87 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF573-217 - 665 3.4e-07 29.9 86.5 9 19 0.0064 5.2 6.9 0.1 6 26 359 379 357 380 0.90 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF573-217 - 665 3.4e-07 29.9 86.5 10 19 0.13 1.1e+02 2.7 0.6 7 16 388 397 386 405 0.79 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF573-217 - 665 3.4e-07 29.9 86.5 11 19 0.0035 2.8 7.8 0.1 6 26 415 435 412 436 0.91 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF573-217 - 665 3.4e-07 29.9 86.5 12 19 0.0079 6.4 6.6 0.3 7 26 444 463 442 464 0.90 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF573-217 - 665 3.4e-07 29.9 86.5 13 19 0.027 22 4.9 0.1 7 24 472 489 470 491 0.84 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF573-217 - 665 3.4e-07 29.9 86.5 14 19 0.00012 0.095 12.5 0.2 5 26 498 519 495 520 0.92 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF573-217 - 665 3.4e-07 29.9 86.5 15 19 5.9 4.8e+03 -2.6 0.2 9 13 527 531 526 536 0.80 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF573-217 - 665 3.4e-07 29.9 86.5 16 19 0.46 3.8e+02 1.0 0.1 5 14 554 563 550 575 0.76 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF573-217 - 665 3.4e-07 29.9 86.5 17 19 0.14 1.2e+02 2.6 0.0 6 26 583 603 578 604 0.81 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF573-217 - 665 3.4e-07 29.9 86.5 18 19 0.031 25 4.7 0.0 6 26 611 631 609 632 0.88 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF573-217 - 665 3.4e-07 29.9 86.5 19 19 0.29 2.4e+02 1.6 0.5 7 26 640 659 638 660 0.86 zinc-finger C2H2-type # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF573-217.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF573-217.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF573-217.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF573-217.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF573-217.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:09:44 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF573-218.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF573-218.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF573-218.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF573-218.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF573-218.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:09:45 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- KRAB PF01352.27 42 ZNF573-219 - 110 3.8e-27 93.7 0.2 1 1 3.9e-31 7e-27 92.8 0.2 1 42 27 68 27 68 0.99 KRAB box # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF573-219.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF573-219.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF573-219.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF573-219.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF573-219.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:09:45 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-C2H2 PF00096.26 23 ZNF574-201 - 986 1.2e-61 201.8 122.7 1 20 0.028 25 5.6 0.1 1 23 106 128 106 128 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF574-201 - 986 1.2e-61 201.8 122.7 2 20 0.0039 3.5 8.3 0.1 1 23 166 188 166 188 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF574-201 - 986 1.2e-61 201.8 122.7 3 20 0.00057 0.52 10.9 0.1 1 23 216 238 216 238 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF574-201 - 986 1.2e-61 201.8 122.7 4 20 0.0047 4.2 8.0 0.2 1 23 304 326 304 326 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF574-201 - 986 1.2e-61 201.8 122.7 5 20 0.014 12 6.6 1.3 3 23 401 421 399 421 0.95 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF574-201 - 986 1.2e-61 201.8 122.7 6 20 2.8e-06 0.0025 18.2 0.2 1 23 426 448 426 448 0.92 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF574-201 - 986 1.2e-61 201.8 122.7 7 20 0.00025 0.23 12.0 0.0 2 23 455 476 454 476 0.94 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF574-201 - 986 1.2e-61 201.8 122.7 8 20 0.0043 3.8 8.1 0.9 6 23 486 503 486 503 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF574-201 - 986 1.2e-61 201.8 122.7 9 20 0.00027 0.24 11.9 0.9 1 23 556 579 556 579 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF574-201 - 986 1.2e-61 201.8 122.7 10 20 5.8e-07 0.00052 20.3 6.6 1 23 585 607 585 607 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF574-201 - 986 1.2e-61 201.8 122.7 11 20 8.1e-09 7.2e-06 26.2 0.2 1 23 613 635 613 635 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF574-201 - 986 1.2e-61 201.8 122.7 12 20 1.1e-08 9.7e-06 25.8 0.6 1 23 641 663 641 663 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF574-201 - 986 1.2e-61 201.8 122.7 13 20 0.0087 7.8 7.2 5.4 1 23 669 691 669 691 0.95 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF574-201 - 986 1.2e-61 201.8 122.7 14 20 0.00045 0.4 11.2 0.3 1 23 697 720 697 720 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF574-201 - 986 1.2e-61 201.8 122.7 15 20 0.011 9.5 6.9 0.7 1 20 726 745 726 747 0.92 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF574-201 - 986 1.2e-61 201.8 122.7 16 20 0.0073 6.5 7.4 0.0 1 23 757 779 757 779 0.91 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF574-201 - 986 1.2e-61 201.8 122.7 17 20 1.2e-05 0.011 16.2 0.6 2 23 829 850 828 850 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF574-201 - 986 1.2e-61 201.8 122.7 18 20 7.1e-09 6.4e-06 26.3 1.7 1 23 856 878 856 878 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF574-201 - 986 1.2e-61 201.8 122.7 19 20 0.0005 0.45 11.1 0.0 1 23 884 906 884 906 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF574-201 - 986 1.2e-61 201.8 122.7 20 20 9e-09 8e-06 26.0 1.9 1 23 912 934 912 934 0.99 Zinc finger, C2H2 type zf-H2C2_2 PF13465.6 26 ZNF574-201 - 986 2.5e-52 173.1 120.0 1 21 0.72 6.4e+02 1.1 0.1 14 22 105 113 100 117 0.80 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF574-201 - 986 2.5e-52 173.1 120.0 2 21 1.1 9.6e+02 0.5 0.1 11 21 162 172 158 173 0.86 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF574-201 - 986 2.5e-52 173.1 120.0 3 21 3.2 2.8e+03 -1.0 0.1 15 25 216 226 210 227 0.79 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF574-201 - 986 2.5e-52 173.1 120.0 4 21 0.59 5.3e+02 1.3 0.1 15 22 304 311 297 313 0.83 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF574-201 - 986 2.5e-52 173.1 120.0 5 21 2.8 2.5e+03 -0.8 0.1 16 25 400 409 396 410 0.80 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF574-201 - 986 2.5e-52 173.1 120.0 6 21 2.8e-05 0.025 15.0 0.2 2 24 414 435 413 437 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF574-201 - 986 2.5e-52 173.1 120.0 7 21 0.0017 1.5 9.4 0.0 2 26 441 465 440 465 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF574-201 - 986 2.5e-52 173.1 120.0 8 21 0.22 2e+02 2.7 0.6 4 26 471 492 469 492 0.78 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF574-201 - 986 2.5e-52 173.1 120.0 9 21 0.83 7.5e+02 0.9 0.1 15 25 556 566 549 567 0.83 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF574-201 - 986 2.5e-52 173.1 120.0 10 21 4.3e-06 0.0039 17.6 3.1 2 26 571 596 570 596 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF574-201 - 986 2.5e-52 173.1 120.0 11 21 6.5e-09 5.8e-06 26.5 2.0 2 25 600 623 599 624 0.89 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF574-201 - 986 2.5e-52 173.1 120.0 12 21 1.2e-09 1e-06 28.9 0.2 1 25 627 651 627 652 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF574-201 - 986 2.5e-52 173.1 120.0 13 21 0.00039 0.35 11.4 2.7 2 24 656 678 655 680 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF574-201 - 986 2.5e-52 173.1 120.0 14 21 3.2e-06 0.0028 18.0 2.9 4 24 686 706 683 707 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF574-201 - 986 2.5e-52 173.1 120.0 15 21 0.00024 0.21 12.1 0.1 2 24 712 735 712 737 0.85 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF574-201 - 986 2.5e-52 173.1 120.0 16 21 0.14 1.3e+02 3.3 0.1 12 23 754 765 741 768 0.76 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF574-201 - 986 2.5e-52 173.1 120.0 17 21 0.065 58 4.4 0.1 15 26 828 839 823 839 0.87 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF574-201 - 986 2.5e-52 173.1 120.0 18 21 8.8e-11 7.9e-08 32.4 0.2 1 25 842 866 842 867 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF574-201 - 986 2.5e-52 173.1 120.0 19 21 4.5e-10 4e-07 30.2 0.7 1 25 870 894 870 894 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF574-201 - 986 2.5e-52 173.1 120.0 20 21 1.9e-09 1.7e-06 28.2 0.3 2 25 899 922 898 923 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF574-201 - 986 2.5e-52 173.1 120.0 21 21 0.4 3.6e+02 1.9 1.0 1 11 926 936 926 939 0.88 Zinc-finger double domain zf-C2H2_4 PF13894.6 24 ZNF574-201 - 986 3.1e-50 164.4 126.1 1 20 0.011 10 7.3 0.1 1 23 106 128 106 129 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF574-201 - 986 3.1e-50 164.4 126.1 2 20 0.0036 3.2 8.8 0.1 1 23 166 188 166 189 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF574-201 - 986 3.1e-50 164.4 126.1 3 20 0.00074 0.66 11.0 0.2 1 23 216 238 216 239 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF574-201 - 986 3.1e-50 164.4 126.1 4 20 0.0026 2.3 9.3 0.5 1 23 304 326 304 327 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF574-201 - 986 3.1e-50 164.4 126.1 5 20 0.00018 0.16 12.9 1.7 3 23 401 421 399 422 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF574-201 - 986 3.1e-50 164.4 126.1 6 20 7.2e-07 0.00065 20.3 0.3 1 23 426 448 426 449 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF574-201 - 986 3.1e-50 164.4 126.1 7 20 0.0043 3.9 8.6 0.0 1 23 454 476 454 477 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF574-201 - 986 3.1e-50 164.4 126.1 8 20 0.0074 6.6 7.9 1.6 6 23 486 503 482 504 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF574-201 - 986 3.1e-50 164.4 126.1 9 20 0.0015 1.4 10.0 0.9 1 24 556 579 556 579 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF574-201 - 986 3.1e-50 164.4 126.1 10 20 6.7e-06 0.006 17.3 4.8 1 23 585 607 585 608 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF574-201 - 986 3.1e-50 164.4 126.1 11 20 1e-06 0.00094 19.8 0.2 1 23 613 635 613 636 0.97 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF574-201 - 986 3.1e-50 164.4 126.1 12 20 3.6e-05 0.032 15.0 0.3 1 23 641 663 641 664 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF574-201 - 986 3.1e-50 164.4 126.1 13 20 0.0031 2.7 9.0 4.1 1 24 669 691 669 692 0.89 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF574-201 - 986 3.1e-50 164.4 126.1 14 20 0.002 1.8 9.6 0.5 1 24 697 720 697 720 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF574-201 - 986 3.1e-50 164.4 126.1 15 20 0.0011 0.96 10.5 0.3 1 19 726 744 726 745 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF574-201 - 986 3.1e-50 164.4 126.1 16 20 0.0083 7.4 7.7 0.0 1 23 757 779 757 780 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF574-201 - 986 3.1e-50 164.4 126.1 17 20 9.8e-05 0.088 13.7 0.7 2 23 829 850 828 851 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF574-201 - 986 3.1e-50 164.4 126.1 18 20 1.1e-05 0.01 16.6 1.1 1 23 856 878 856 879 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF574-201 - 986 3.1e-50 164.4 126.1 19 20 0.0017 1.5 9.9 0.1 1 23 884 906 884 907 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF574-201 - 986 3.1e-50 164.4 126.1 20 20 5e-06 0.0045 17.7 1.5 1 23 912 934 912 935 0.97 C2H2-type zinc finger zf-C2H2_jaz PF12171.8 27 ZNF574-201 - 986 4e-28 97.1 42.5 1 18 3.2 2.8e+03 -1.2 0.2 2 24 106 128 105 129 0.79 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF574-201 - 986 4e-28 97.1 42.5 2 18 0.00024 0.22 11.9 0.5 2 24 216 238 215 239 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF574-201 - 986 4e-28 97.1 42.5 3 18 3.2e-05 0.029 14.7 0.2 2 24 399 421 398 422 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF574-201 - 986 4e-28 97.1 42.5 4 18 6.7e-06 0.006 16.8 0.0 2 21 426 445 425 445 0.96 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF574-201 - 986 4e-28 97.1 42.5 5 18 0.35 3.2e+02 1.8 0.0 4 21 456 473 453 474 0.91 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF574-201 - 986 4e-28 97.1 42.5 6 18 1.4 1.3e+03 -0.1 0.0 7 24 486 503 484 504 0.88 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF574-201 - 986 4e-28 97.1 42.5 7 18 0.00039 0.35 11.2 0.0 2 22 556 576 555 576 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF574-201 - 986 4e-28 97.1 42.5 8 18 8.5e-05 0.076 13.3 2.9 2 24 585 607 584 607 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF574-201 - 986 4e-28 97.1 42.5 9 18 0.0028 2.5 8.5 0.0 2 22 613 633 612 635 0.89 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF574-201 - 986 4e-28 97.1 42.5 10 18 0.24 2.2e+02 2.3 0.0 2 20 641 659 640 661 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF574-201 - 986 4e-28 97.1 42.5 11 18 0.25 2.2e+02 2.3 0.1 2 20 669 687 668 689 0.86 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF574-201 - 986 4e-28 97.1 42.5 12 18 2.3 2e+03 -0.8 0.0 2 11 697 706 696 716 0.82 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF574-201 - 986 4e-28 97.1 42.5 13 18 0.93 8.3e+02 0.5 0.0 2 20 726 744 725 745 0.90 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF574-201 - 986 4e-28 97.1 42.5 14 18 0.015 14 6.1 0.0 2 21 757 776 756 777 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF574-201 - 986 4e-28 97.1 42.5 15 18 0.00012 0.11 12.8 0.0 3 21 829 847 827 848 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF574-201 - 986 4e-28 97.1 42.5 16 18 0.43 3.8e+02 1.5 0.0 2 21 856 875 855 876 0.88 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF574-201 - 986 4e-28 97.1 42.5 17 18 0.22 2e+02 2.4 0.0 2 12 884 894 883 904 0.82 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF574-201 - 986 4e-28 97.1 42.5 18 18 1.1 1e+03 0.2 1.9 2 24 912 934 911 939 0.84 Zinc-finger double-stranded RNA-binding zf-C2H2_6 PF13912.6 27 ZNF574-201 - 986 1.1e-15 57.1 107.7 1 19 0.0031 2.7 8.1 0.1 1 20 105 124 105 130 0.79 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF574-201 - 986 1.1e-15 57.1 107.7 2 19 0.0082 7.4 6.7 0.5 1 25 215 239 215 241 0.91 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF574-201 - 986 1.1e-15 57.1 107.7 3 19 0.016 14 5.8 0.5 2 12 304 314 303 314 0.91 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF574-201 - 986 1.1e-15 57.1 107.7 4 19 0.27 2.4e+02 1.9 1.4 4 26 401 423 401 424 0.89 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF574-201 - 986 1.1e-15 57.1 107.7 5 19 6.9e-05 0.061 13.3 0.1 1 21 425 445 425 451 0.83 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF574-201 - 986 1.1e-15 57.1 107.7 6 19 0.44 4e+02 1.2 0.1 1 24 453 476 453 478 0.89 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF574-201 - 986 1.1e-15 57.1 107.7 7 19 2.7 2.4e+03 -1.3 0.2 7 24 486 503 485 503 0.66 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF574-201 - 986 1.1e-15 57.1 107.7 8 19 0.18 1.6e+02 2.4 0.2 2 13 556 567 555 579 0.88 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF574-201 - 986 1.1e-15 57.1 107.7 9 19 0.0037 3.3 7.8 2.7 1 24 584 607 584 610 0.76 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF574-201 - 986 1.1e-15 57.1 107.7 10 19 0.03 27 4.9 0.0 2 24 613 635 613 638 0.89 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF574-201 - 986 1.1e-15 57.1 107.7 11 19 1.3 1.2e+03 -0.3 0.2 2 12 641 651 641 660 0.81 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF574-201 - 986 1.1e-15 57.1 107.7 12 19 1.5e-05 0.014 15.4 2.4 2 24 669 691 669 694 0.95 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF574-201 - 986 1.1e-15 57.1 107.7 13 19 1.1 9.6e+02 -0.0 0.7 2 11 697 706 697 706 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF574-201 - 986 1.1e-15 57.1 107.7 14 19 0.00051 0.46 10.6 0.3 2 21 726 745 726 747 0.91 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF574-201 - 986 1.1e-15 57.1 107.7 15 19 0.5 4.5e+02 1.0 0.1 1 9 756 764 756 779 0.89 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF574-201 - 986 1.1e-15 57.1 107.7 16 19 3.5e-06 0.0031 17.5 0.6 3 24 829 850 829 853 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF574-201 - 986 1.1e-15 57.1 107.7 17 19 0.1 90 3.2 0.4 2 22 856 876 856 880 0.78 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF574-201 - 986 1.1e-15 57.1 107.7 18 19 0.087 78 3.4 0.1 2 11 884 893 884 906 0.88 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF574-201 - 986 1.1e-15 57.1 107.7 19 19 1.5e-06 0.0014 18.6 2.2 2 26 912 936 912 937 0.93 C2H2-type zinc finger zf-met PF12874.7 25 ZNF574-201 - 986 1.9e-13 50.3 59.0 1 15 0.78 7e+02 0.8 0.6 1 23 106 128 106 129 0.90 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF574-201 - 986 1.9e-13 50.3 59.0 2 15 2.7 2.4e+03 -0.9 0.1 1 19 166 184 166 186 0.84 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF574-201 - 986 1.9e-13 50.3 59.0 3 15 0.023 21 5.7 0.5 1 21 216 236 216 238 0.91 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF574-201 - 986 1.9e-13 50.3 59.0 4 15 1.7e-05 0.015 15.6 0.4 2 24 400 422 399 422 0.95 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF574-201 - 986 1.9e-13 50.3 59.0 5 15 3.4e-06 0.003 17.9 0.0 1 20 426 445 426 446 0.96 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF574-201 - 986 1.9e-13 50.3 59.0 6 15 3.9 3.5e+03 -1.4 0.1 1 19 556 574 556 576 0.77 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF574-201 - 986 1.9e-13 50.3 59.0 7 15 0.00019 0.17 12.3 2.8 2 22 586 606 585 608 0.91 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF574-201 - 986 1.9e-13 50.3 59.0 8 15 0.008 7.2 7.2 0.0 3 19 615 631 613 632 0.93 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF574-201 - 986 1.9e-13 50.3 59.0 9 15 0.039 35 5.0 0.0 1 19 641 659 641 660 0.96 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF574-201 - 986 1.9e-13 50.3 59.0 10 15 4.4 4e+03 -1.6 0.1 1 10 669 678 669 687 0.82 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF574-201 - 986 1.9e-13 50.3 59.0 11 15 0.032 29 5.2 0.0 1 20 757 776 757 779 0.92 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF574-201 - 986 1.9e-13 50.3 59.0 12 15 0.0019 1.7 9.1 0.4 2 19 829 846 828 851 0.89 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF574-201 - 986 1.9e-13 50.3 59.0 13 15 1 9.1e+02 0.5 0.0 3 19 858 874 856 876 0.91 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF574-201 - 986 1.9e-13 50.3 59.0 14 15 0.47 4.2e+02 1.5 0.1 1 10 884 893 884 894 0.81 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF574-201 - 986 1.9e-13 50.3 59.0 15 15 1.9 1.7e+03 -0.4 0.5 1 19 912 930 912 934 0.80 Zinc-finger of C2H2 type zf_UBZ PF18439.1 32 ZNF574-201 - 986 1e-12 47.4 63.6 1 19 0.025 22 4.7 0.1 3 11 106 114 104 125 0.84 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF574-201 - 986 1e-12 47.4 63.6 2 19 0.00063 0.57 9.8 0.2 2 21 165 185 164 189 0.88 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF574-201 - 986 1e-12 47.4 63.6 3 19 0.79 7.1e+02 -0.1 0.1 2 16 215 229 215 231 0.85 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF574-201 - 986 1e-12 47.4 63.6 4 19 0.00053 0.48 10.1 0.2 3 21 304 323 303 323 0.96 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF574-201 - 986 1e-12 47.4 63.6 5 19 0.0058 5.2 6.8 0.3 3 21 399 418 397 418 0.91 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF574-201 - 986 1e-12 47.4 63.6 6 19 0.025 22 4.7 0.0 3 21 426 445 424 445 0.92 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF574-201 - 986 1e-12 47.4 63.6 7 19 1.6 1.4e+03 -1.1 0.0 2 10 453 461 452 469 0.82 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF574-201 - 986 1e-12 47.4 63.6 8 19 3.3 3e+03 -2.1 0.0 2 20 555 574 554 575 0.75 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF574-201 - 986 1e-12 47.4 63.6 9 19 0.1 93 2.7 0.2 3 13 585 595 583 603 0.85 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF574-201 - 986 1e-12 47.4 63.6 10 19 0.015 13 5.4 0.1 3 15 613 625 611 632 0.80 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF574-201 - 986 1e-12 47.4 63.6 11 19 0.044 40 3.9 0.0 3 20 641 659 639 660 0.83 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF574-201 - 986 1e-12 47.4 63.6 12 19 0.27 2.4e+02 1.4 0.1 3 12 669 678 668 687 0.83 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF574-201 - 986 1e-12 47.4 63.6 13 19 1.6 1.5e+03 -1.1 0.1 3 15 697 709 696 715 0.79 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF574-201 - 986 1e-12 47.4 63.6 14 19 0.0065 5.9 6.6 0.1 4 20 727 744 724 745 0.91 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF574-201 - 986 1e-12 47.4 63.6 15 19 0.073 65 3.2 0.0 3 21 757 776 755 776 0.83 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF574-201 - 986 1e-12 47.4 63.6 16 19 0.027 24 4.6 0.1 4 20 829 846 827 847 0.82 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF574-201 - 986 1e-12 47.4 63.6 17 19 0.0083 7.5 6.3 0.1 3 14 856 867 854 874 0.84 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF574-201 - 986 1e-12 47.4 63.6 18 19 0.0088 7.9 6.2 0.0 3 20 884 902 882 903 0.92 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF574-201 - 986 1e-12 47.4 63.6 19 19 0.025 22 4.7 0.2 3 11 912 920 910 925 0.87 Ubiquitin-Binding Zinc Finger zf-C2H2_11 PF16622.5 29 ZNF574-201 - 986 7.3e-08 32.0 85.8 1 17 0.016 14 5.5 0.5 2 11 163 172 162 180 0.89 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF574-201 - 986 7.3e-08 32.0 85.8 2 17 0.016 14 5.5 0.1 6 17 217 228 211 236 0.88 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF574-201 - 986 7.3e-08 32.0 85.8 3 17 6.5 5.8e+03 -2.8 1.0 7 25 401 419 400 419 0.89 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF574-201 - 986 7.3e-08 32.0 85.8 4 17 0.0033 3 7.7 0.0 5 24 426 445 423 446 0.93 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF574-201 - 986 7.3e-08 32.0 85.8 5 17 0.055 49 3.8 0.1 7 24 456 473 451 475 0.76 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF574-201 - 986 7.3e-08 32.0 85.8 6 17 5.8e-06 0.0052 16.5 0.6 4 28 555 579 553 580 0.96 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF574-201 - 986 7.3e-08 32.0 85.8 7 17 3.6 3.2e+03 -2.0 0.2 5 14 585 594 584 604 0.86 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF574-201 - 986 7.3e-08 32.0 85.8 8 17 0.12 1.1e+02 2.7 0.0 7 24 615 632 613 635 0.91 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF574-201 - 986 7.3e-08 32.0 85.8 9 17 0.0006 0.54 10.1 0.6 5 25 641 661 639 663 0.91 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF574-201 - 986 7.3e-08 32.0 85.8 10 17 0.022 19 5.1 0.2 5 14 669 678 668 688 0.87 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF574-201 - 986 7.3e-08 32.0 85.8 11 17 0.37 3.3e+02 1.2 0.3 5 28 697 720 696 720 0.75 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF574-201 - 986 7.3e-08 32.0 85.8 12 17 0.001 0.9 9.4 1.4 5 24 726 745 724 747 0.95 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF574-201 - 986 7.3e-08 32.0 85.8 13 17 4.3 3.9e+03 -2.3 0.2 7 13 759 765 757 775 0.60 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF574-201 - 986 7.3e-08 32.0 85.8 14 17 0.00055 0.49 10.2 0.4 7 26 830 849 827 850 0.94 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF574-201 - 986 7.3e-08 32.0 85.8 15 17 0.92 8.2e+02 -0.1 0.3 7 25 858 876 856 878 0.88 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF574-201 - 986 7.3e-08 32.0 85.8 16 17 0.0045 4 7.3 0.2 7 26 886 905 884 906 0.94 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF574-201 - 986 7.3e-08 32.0 85.8 17 17 0.19 1.7e+02 2.1 0.1 7 24 914 931 911 933 0.91 zinc-finger C2H2-type # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF574-201.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF574-201.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF574-201.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF574-201.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF574-201.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:09:46 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-C2H2 PF00096.26 23 ZNF574-202 - 896 1.5e-62 204.7 122.7 1 20 0.024 23 5.7 0.1 1 23 16 38 16 38 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF574-202 - 896 1.5e-62 204.7 122.7 2 20 0.0033 3.2 8.4 0.1 1 23 76 98 76 98 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF574-202 - 896 1.5e-62 204.7 122.7 3 20 0.00049 0.46 11.0 0.1 1 23 126 148 126 148 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF574-202 - 896 1.5e-62 204.7 122.7 4 20 0.004 3.8 8.2 0.2 1 23 214 236 214 236 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF574-202 - 896 1.5e-62 204.7 122.7 5 20 0.012 11 6.7 1.3 3 23 311 331 309 331 0.95 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF574-202 - 896 1.5e-62 204.7 122.7 6 20 2.4e-06 0.0022 18.3 0.2 1 23 336 358 336 358 0.92 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF574-202 - 896 1.5e-62 204.7 122.7 7 20 0.00022 0.2 12.2 0.0 2 23 365 386 364 386 0.94 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF574-202 - 896 1.5e-62 204.7 122.7 8 20 0.0037 3.5 8.3 0.9 6 23 396 413 396 413 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF574-202 - 896 1.5e-62 204.7 122.7 9 20 0.00023 0.22 12.1 0.9 1 23 466 489 466 489 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF574-202 - 896 1.5e-62 204.7 122.7 10 20 4.9e-07 0.00047 20.5 6.6 1 23 495 517 495 517 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF574-202 - 896 1.5e-62 204.7 122.7 11 20 6.9e-09 6.5e-06 26.3 0.2 1 23 523 545 523 545 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF574-202 - 896 1.5e-62 204.7 122.7 12 20 9.2e-09 8.7e-06 25.9 0.6 1 23 551 573 551 573 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF574-202 - 896 1.5e-62 204.7 122.7 13 20 0.0074 7 7.3 5.4 1 23 579 601 579 601 0.95 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF574-202 - 896 1.5e-62 204.7 122.7 14 20 0.00038 0.36 11.4 0.3 1 23 607 630 607 630 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF574-202 - 896 1.5e-62 204.7 122.7 15 20 0.009 8.5 7.1 0.7 1 20 636 655 636 657 0.92 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF574-202 - 896 1.5e-62 204.7 122.7 16 20 0.0062 5.9 7.6 0.0 1 23 667 689 667 689 0.91 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF574-202 - 896 1.5e-62 204.7 122.7 17 20 1e-05 0.0097 16.3 0.6 2 23 739 760 738 760 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF574-202 - 896 1.5e-62 204.7 122.7 18 20 6.1e-09 5.7e-06 26.5 1.7 1 23 766 788 766 788 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF574-202 - 896 1.5e-62 204.7 122.7 19 20 0.00042 0.4 11.2 0.0 1 23 794 816 794 816 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF574-202 - 896 1.5e-62 204.7 122.7 20 20 7.7e-09 7.2e-06 26.2 1.9 1 23 822 844 822 844 0.99 Zinc finger, C2H2 type zf-H2C2_2 PF13465.6 26 ZNF574-202 - 896 2.7e-53 176.1 119.7 1 21 0.61 5.8e+02 1.2 0.1 14 22 15 23 10 27 0.80 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF574-202 - 896 2.7e-53 176.1 119.7 2 21 0.91 8.6e+02 0.7 0.1 11 21 72 82 68 83 0.86 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF574-202 - 896 2.7e-53 176.1 119.7 3 21 2.7 2.5e+03 -0.8 0.1 15 25 126 136 120 137 0.79 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF574-202 - 896 2.7e-53 176.1 119.7 4 21 0.51 4.8e+02 1.5 0.1 15 22 214 221 207 223 0.83 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF574-202 - 896 2.7e-53 176.1 119.7 5 21 2.4 2.2e+03 -0.6 0.1 16 25 310 319 306 320 0.80 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF574-202 - 896 2.7e-53 176.1 119.7 6 21 2.4e-05 0.023 15.1 0.2 2 24 324 345 323 347 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF574-202 - 896 2.7e-53 176.1 119.7 7 21 0.0015 1.4 9.5 0.0 2 26 351 375 350 375 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF574-202 - 896 2.7e-53 176.1 119.7 8 21 0.19 1.8e+02 2.8 0.6 4 26 381 402 379 402 0.78 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF574-202 - 896 2.7e-53 176.1 119.7 9 21 0.7 6.6e+02 1.0 0.0 15 25 466 476 458 477 0.84 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF574-202 - 896 2.7e-53 176.1 119.7 10 21 3.7e-06 0.0035 17.7 3.1 2 26 481 506 480 506 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF574-202 - 896 2.7e-53 176.1 119.7 11 21 5.5e-09 5.2e-06 26.6 2.0 2 25 510 533 509 534 0.89 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF574-202 - 896 2.7e-53 176.1 119.7 12 21 9.8e-10 9.3e-07 29.0 0.2 1 25 537 561 537 562 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF574-202 - 896 2.7e-53 176.1 119.7 13 21 0.00033 0.31 11.5 2.7 2 24 566 588 565 590 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF574-202 - 896 2.7e-53 176.1 119.7 14 21 2.7e-06 0.0025 18.1 2.9 4 24 596 616 593 617 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF574-202 - 896 2.7e-53 176.1 119.7 15 21 0.0002 0.19 12.2 0.1 2 24 622 645 622 647 0.85 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF574-202 - 896 2.7e-53 176.1 119.7 16 21 0.12 1.2e+02 3.4 0.1 12 23 664 675 651 678 0.76 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF574-202 - 896 2.7e-53 176.1 119.7 17 21 0.055 52 4.5 0.1 15 26 738 749 733 749 0.87 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF574-202 - 896 2.7e-53 176.1 119.7 18 21 7.5e-11 7e-08 32.6 0.2 1 25 752 776 752 777 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF574-202 - 896 2.7e-53 176.1 119.7 19 21 3.8e-10 3.6e-07 30.3 0.7 1 25 780 804 780 804 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF574-202 - 896 2.7e-53 176.1 119.7 20 21 1.6e-09 1.5e-06 28.3 0.3 2 25 809 832 808 833 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF574-202 - 896 2.7e-53 176.1 119.7 21 21 0.34 3.2e+02 2.0 1.0 1 11 836 846 836 849 0.88 Zinc-finger double domain zf-C2H2_4 PF13894.6 24 ZNF574-202 - 896 3.7e-51 167.3 126.1 1 20 0.0095 9 7.4 0.1 1 23 16 38 16 39 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF574-202 - 896 3.7e-51 167.3 126.1 2 20 0.0031 2.9 9.0 0.1 1 23 76 98 76 99 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF574-202 - 896 3.7e-51 167.3 126.1 3 20 0.00063 0.59 11.1 0.2 1 23 126 148 126 149 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF574-202 - 896 3.7e-51 167.3 126.1 4 20 0.0022 2.1 9.4 0.5 1 23 214 236 214 237 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF574-202 - 896 3.7e-51 167.3 126.1 5 20 0.00015 0.14 13.0 1.7 3 23 311 331 309 332 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF574-202 - 896 3.7e-51 167.3 126.1 6 20 6.2e-07 0.00058 20.5 0.3 1 23 336 358 336 359 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF574-202 - 896 3.7e-51 167.3 126.1 7 20 0.0037 3.5 8.7 0.0 1 23 364 386 364 387 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF574-202 - 896 3.7e-51 167.3 126.1 8 20 0.0063 5.9 8.0 1.6 6 23 396 413 392 414 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF574-202 - 896 3.7e-51 167.3 126.1 9 20 0.0013 1.2 10.2 0.9 1 24 466 489 466 489 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF574-202 - 896 3.7e-51 167.3 126.1 10 20 5.7e-06 0.0054 17.5 4.8 1 23 495 517 495 518 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF574-202 - 896 3.7e-51 167.3 126.1 11 20 8.9e-07 0.00084 20.0 0.2 1 23 523 545 523 546 0.97 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF574-202 - 896 3.7e-51 167.3 126.1 12 20 3.1e-05 0.029 15.2 0.3 1 23 551 573 551 574 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF574-202 - 896 3.7e-51 167.3 126.1 13 20 0.0026 2.5 9.2 4.1 1 24 579 601 579 602 0.89 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF574-202 - 896 3.7e-51 167.3 126.1 14 20 0.0017 1.6 9.8 0.5 1 24 607 630 607 630 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF574-202 - 896 3.7e-51 167.3 126.1 15 20 0.00092 0.87 10.6 0.3 1 19 636 654 636 655 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF574-202 - 896 3.7e-51 167.3 126.1 16 20 0.0071 6.7 7.8 0.0 1 23 667 689 667 690 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF574-202 - 896 3.7e-51 167.3 126.1 17 20 8.3e-05 0.079 13.8 0.7 2 23 739 760 738 761 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF574-202 - 896 3.7e-51 167.3 126.1 18 20 9.7e-06 0.0092 16.7 1.1 1 23 766 788 766 789 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF574-202 - 896 3.7e-51 167.3 126.1 19 20 0.0014 1.3 10.0 0.1 1 23 794 816 794 817 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF574-202 - 896 3.7e-51 167.3 126.1 20 20 4.2e-06 0.004 17.9 1.5 1 23 822 844 822 845 0.97 C2H2-type zinc finger zf-C2H2_jaz PF12171.8 27 ZNF574-202 - 896 7.1e-29 99.5 42.5 1 18 2.7 2.5e+03 -1.1 0.2 2 24 16 38 15 39 0.79 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF574-202 - 896 7.1e-29 99.5 42.5 2 18 0.00021 0.2 12.0 0.5 2 24 126 148 125 149 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF574-202 - 896 7.1e-29 99.5 42.5 3 18 2.8e-05 0.026 14.8 0.2 2 24 309 331 308 332 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF574-202 - 896 7.1e-29 99.5 42.5 4 18 5.7e-06 0.0054 17.0 0.0 2 21 336 355 335 355 0.96 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF574-202 - 896 7.1e-29 99.5 42.5 5 18 0.3 2.8e+02 1.9 0.0 4 21 366 383 363 384 0.91 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF574-202 - 896 7.1e-29 99.5 42.5 6 18 1.2 1.1e+03 0.0 0.0 7 24 396 413 394 414 0.88 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF574-202 - 896 7.1e-29 99.5 42.5 7 18 0.00034 0.32 11.3 0.0 2 22 466 486 465 486 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF574-202 - 896 7.1e-29 99.5 42.5 8 18 7.3e-05 0.068 13.5 2.9 2 24 495 517 494 517 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF574-202 - 896 7.1e-29 99.5 42.5 9 18 0.0024 2.3 8.6 0.0 2 22 523 543 522 545 0.89 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF574-202 - 896 7.1e-29 99.5 42.5 10 18 0.21 2e+02 2.5 0.0 2 20 551 569 550 571 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF574-202 - 896 7.1e-29 99.5 42.5 11 18 0.21 2e+02 2.4 0.1 2 20 579 597 578 599 0.86 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF574-202 - 896 7.1e-29 99.5 42.5 12 18 2 1.8e+03 -0.6 0.0 2 11 607 616 606 626 0.82 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF574-202 - 896 7.1e-29 99.5 42.5 13 18 0.79 7.5e+02 0.6 0.0 2 20 636 654 635 655 0.90 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF574-202 - 896 7.1e-29 99.5 42.5 14 18 0.013 12 6.3 0.0 2 21 667 686 666 687 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF574-202 - 896 7.1e-29 99.5 42.5 15 18 0.0001 0.098 13.0 0.0 2 21 738 757 737 758 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF574-202 - 896 7.1e-29 99.5 42.5 16 18 0.37 3.5e+02 1.7 0.0 2 21 766 785 765 786 0.88 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF574-202 - 896 7.1e-29 99.5 42.5 17 18 0.19 1.8e+02 2.6 0.0 2 12 794 804 793 814 0.82 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF574-202 - 896 7.1e-29 99.5 42.5 18 18 0.98 9.2e+02 0.3 1.9 2 24 822 844 821 849 0.84 Zinc-finger double-stranded RNA-binding zf-C2H2_6 PF13912.6 27 ZNF574-202 - 896 1.7e-16 59.7 107.7 1 19 0.0026 2.5 8.2 0.1 1 20 15 34 15 40 0.79 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF574-202 - 896 1.7e-16 59.7 107.7 2 19 0.007 6.6 6.9 0.5 1 25 125 149 125 151 0.91 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF574-202 - 896 1.7e-16 59.7 107.7 3 19 0.013 13 6.0 0.5 2 12 214 224 213 224 0.91 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF574-202 - 896 1.7e-16 59.7 107.7 4 19 0.23 2.2e+02 2.0 1.4 4 26 311 333 311 334 0.89 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF574-202 - 896 1.7e-16 59.7 107.7 5 19 5.9e-05 0.055 13.5 0.1 1 21 335 355 335 361 0.83 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF574-202 - 896 1.7e-16 59.7 107.7 6 19 0.38 3.6e+02 1.3 0.1 1 24 363 386 363 388 0.89 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF574-202 - 896 1.7e-16 59.7 107.7 7 19 2.3 2.2e+03 -1.2 0.2 7 24 396 413 395 413 0.66 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF574-202 - 896 1.7e-16 59.7 107.7 8 19 0.16 1.5e+02 2.5 0.2 2 13 466 477 465 489 0.88 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF574-202 - 896 1.7e-16 59.7 107.7 9 19 0.0031 2.9 8.0 2.7 1 24 494 517 494 520 0.76 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF574-202 - 896 1.7e-16 59.7 107.7 10 19 0.026 24 5.1 0.0 2 24 523 545 523 548 0.89 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF574-202 - 896 1.7e-16 59.7 107.7 11 19 1.1 1.1e+03 -0.2 0.2 2 12 551 561 551 570 0.81 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF574-202 - 896 1.7e-16 59.7 107.7 12 19 1.3e-05 0.012 15.6 2.4 2 24 579 601 579 604 0.95 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF574-202 - 896 1.7e-16 59.7 107.7 13 19 0.91 8.6e+02 0.1 0.7 2 11 607 616 607 616 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF574-202 - 896 1.7e-16 59.7 107.7 14 19 0.00044 0.41 10.7 0.3 2 21 636 655 636 657 0.91 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF574-202 - 896 1.7e-16 59.7 107.7 15 19 0.43 4e+02 1.2 0.1 1 9 666 674 666 689 0.89 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF574-202 - 896 1.7e-16 59.7 107.7 16 19 3e-06 0.0028 17.6 0.6 3 24 739 760 739 763 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF574-202 - 896 1.7e-16 59.7 107.7 17 19 0.085 81 3.4 0.4 2 22 766 786 766 790 0.78 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF574-202 - 896 1.7e-16 59.7 107.7 18 19 0.074 70 3.6 0.1 2 11 794 803 794 816 0.88 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF574-202 - 896 1.7e-16 59.7 107.7 19 19 1.3e-06 0.0012 18.7 2.2 2 26 822 846 822 847 0.93 C2H2-type zinc finger zf_UBZ PF18439.1 32 ZNF574-202 - 896 1.1e-13 50.5 63.1 1 19 0.021 20 4.9 0.1 3 11 16 24 14 35 0.84 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF574-202 - 896 1.1e-13 50.5 63.1 2 19 0.00054 0.51 10.0 0.2 2 21 75 95 74 99 0.88 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF574-202 - 896 1.1e-13 50.5 63.1 3 19 0.66 6.2e+02 0.1 0.0 2 16 125 139 125 142 0.85 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF574-202 - 896 1.1e-13 50.5 63.1 4 19 0.00045 0.43 10.2 0.2 3 21 214 233 213 233 0.96 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF574-202 - 896 1.1e-13 50.5 63.1 5 19 0.005 4.7 6.9 0.3 3 21 309 328 307 328 0.91 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF574-202 - 896 1.1e-13 50.5 63.1 6 19 0.021 20 4.9 0.0 3 21 336 355 334 355 0.92 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF574-202 - 896 1.1e-13 50.5 63.1 7 19 1.4 1.3e+03 -0.9 0.0 2 10 363 371 362 379 0.82 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF574-202 - 896 1.1e-13 50.5 63.1 8 19 2.8 2.7e+03 -1.9 0.0 2 20 465 484 464 485 0.75 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF574-202 - 896 1.1e-13 50.5 63.1 9 19 0.089 84 2.9 0.2 3 13 495 505 493 513 0.85 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF574-202 - 896 1.1e-13 50.5 63.1 10 19 0.013 12 5.6 0.1 3 15 523 535 521 542 0.80 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF574-202 - 896 1.1e-13 50.5 63.1 11 19 0.038 36 4.1 0.0 3 20 551 569 549 570 0.83 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF574-202 - 896 1.1e-13 50.5 63.1 12 19 0.23 2.2e+02 1.6 0.1 3 12 579 588 578 597 0.83 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF574-202 - 896 1.1e-13 50.5 63.1 13 19 1.4 1.3e+03 -1.0 0.1 3 15 607 619 606 625 0.79 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF574-202 - 896 1.1e-13 50.5 63.1 14 19 0.0056 5.3 6.7 0.1 4 20 637 654 634 655 0.91 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF574-202 - 896 1.1e-13 50.5 63.1 15 19 0.062 59 3.4 0.0 3 21 667 686 665 686 0.83 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF574-202 - 896 1.1e-13 50.5 63.1 16 19 0.023 22 4.8 0.1 4 20 739 756 737 757 0.82 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF574-202 - 896 1.1e-13 50.5 63.1 17 19 0.0071 6.7 6.4 0.1 3 14 766 777 764 784 0.84 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF574-202 - 896 1.1e-13 50.5 63.1 18 19 0.0075 7.1 6.3 0.0 3 20 794 812 792 813 0.92 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF574-202 - 896 1.1e-13 50.5 63.1 19 19 0.021 20 4.9 0.2 3 11 822 830 820 835 0.87 Ubiquitin-Binding Zinc Finger zf-met PF12874.7 25 ZNF574-202 - 896 1.2e-13 50.9 60.3 1 15 0.67 6.3e+02 1.0 0.6 1 23 16 38 16 39 0.90 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF574-202 - 896 1.2e-13 50.9 60.3 2 15 2.3 2.1e+03 -0.7 0.1 1 19 76 94 76 96 0.84 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF574-202 - 896 1.2e-13 50.9 60.3 3 15 0.02 19 5.8 0.5 1 21 126 146 126 148 0.91 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF574-202 - 896 1.2e-13 50.9 60.3 4 15 1.5e-05 0.014 15.8 0.4 2 24 310 332 309 332 0.95 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF574-202 - 896 1.2e-13 50.9 60.3 5 15 2.9e-06 0.0027 18.0 0.0 1 20 336 355 336 356 0.96 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF574-202 - 896 1.2e-13 50.9 60.3 6 15 3.3 3.1e+03 -1.2 0.1 1 19 466 484 466 486 0.77 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF574-202 - 896 1.2e-13 50.9 60.3 7 15 0.00016 0.16 12.4 2.8 2 22 496 516 495 518 0.91 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF574-202 - 896 1.2e-13 50.9 60.3 8 15 0.0069 6.5 7.3 0.0 3 19 525 541 523 542 0.93 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF574-202 - 896 1.2e-13 50.9 60.3 9 15 0.034 32 5.1 0.0 1 19 551 569 551 570 0.96 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF574-202 - 896 1.2e-13 50.9 60.3 10 15 3.8 3.6e+03 -1.4 0.1 1 10 579 588 579 597 0.82 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF574-202 - 896 1.2e-13 50.9 60.3 11 15 0.027 26 5.4 0.0 1 20 667 686 667 689 0.92 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF574-202 - 896 1.2e-13 50.9 60.3 12 15 0.0017 1.6 9.3 0.4 2 19 739 756 738 761 0.89 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF574-202 - 896 1.2e-13 50.9 60.3 13 15 0.86 8.2e+02 0.6 0.0 3 19 768 784 766 786 0.91 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF574-202 - 896 1.2e-13 50.9 60.3 14 15 0.41 3.8e+02 1.7 0.1 1 10 794 803 794 804 0.81 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF574-202 - 896 1.2e-13 50.9 60.3 15 15 1.7 1.6e+03 -0.3 0.5 1 19 822 840 822 844 0.80 Zinc-finger of C2H2 type zf-C2H2_11 PF16622.5 29 ZNF574-202 - 896 1.3e-08 34.4 85.6 1 17 0.013 12 5.7 0.5 2 11 73 82 72 91 0.88 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF574-202 - 896 1.3e-08 34.4 85.6 2 17 0.013 13 5.7 0.1 6 17 127 138 121 146 0.88 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF574-202 - 896 1.3e-08 34.4 85.6 3 17 5.5 5.2e+03 -2.7 1.0 7 25 311 329 310 329 0.89 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF574-202 - 896 1.3e-08 34.4 85.6 4 17 0.0028 2.7 7.8 0.0 5 24 336 355 333 356 0.93 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF574-202 - 896 1.3e-08 34.4 85.6 5 17 0.047 44 3.9 0.1 7 24 366 383 361 385 0.76 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF574-202 - 896 1.3e-08 34.4 85.6 6 17 4.9e-06 0.0047 16.7 0.6 4 28 465 489 463 490 0.96 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF574-202 - 896 1.3e-08 34.4 85.6 7 17 3.1 2.9e+03 -1.9 0.2 5 14 495 504 494 514 0.86 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF574-202 - 896 1.3e-08 34.4 85.6 8 17 0.1 99 2.8 0.0 7 24 525 542 523 545 0.91 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF574-202 - 896 1.3e-08 34.4 85.6 9 17 0.00052 0.49 10.2 0.6 5 25 551 571 549 573 0.91 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF574-202 - 896 1.3e-08 34.4 85.6 10 17 0.019 18 5.2 0.2 5 14 579 588 578 598 0.87 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF574-202 - 896 1.3e-08 34.4 85.6 11 17 0.32 3e+02 1.3 0.3 5 28 607 630 606 630 0.75 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF574-202 - 896 1.3e-08 34.4 85.6 12 17 0.00086 0.81 9.5 1.4 5 24 636 655 634 657 0.95 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF574-202 - 896 1.3e-08 34.4 85.6 13 17 3.7 3.5e+03 -2.1 0.2 7 13 669 675 667 685 0.60 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF574-202 - 896 1.3e-08 34.4 85.6 14 17 0.00047 0.44 10.3 0.4 7 26 740 759 737 760 0.94 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF574-202 - 896 1.3e-08 34.4 85.6 15 17 0.79 7.4e+02 0.0 0.3 7 25 768 786 766 788 0.88 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF574-202 - 896 1.3e-08 34.4 85.6 16 17 0.0038 3.6 7.4 0.2 7 26 796 815 794 816 0.94 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF574-202 - 896 1.3e-08 34.4 85.6 17 17 0.16 1.6e+02 2.2 0.1 7 24 824 841 821 843 0.91 zinc-finger C2H2-type # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF574-202.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF574-202.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF574-202.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF574-202.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF574-202.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:09:46 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF574-203.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF574-203.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF574-203.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF574-203.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF574-203.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:09:46 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-C2H2 PF00096.26 23 ZNF574-204 - 896 1.5e-62 204.7 122.7 1 20 0.024 23 5.7 0.1 1 23 16 38 16 38 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF574-204 - 896 1.5e-62 204.7 122.7 2 20 0.0033 3.2 8.4 0.1 1 23 76 98 76 98 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF574-204 - 896 1.5e-62 204.7 122.7 3 20 0.00049 0.46 11.0 0.1 1 23 126 148 126 148 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF574-204 - 896 1.5e-62 204.7 122.7 4 20 0.004 3.8 8.2 0.2 1 23 214 236 214 236 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF574-204 - 896 1.5e-62 204.7 122.7 5 20 0.012 11 6.7 1.3 3 23 311 331 309 331 0.95 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF574-204 - 896 1.5e-62 204.7 122.7 6 20 2.4e-06 0.0022 18.3 0.2 1 23 336 358 336 358 0.92 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF574-204 - 896 1.5e-62 204.7 122.7 7 20 0.00022 0.2 12.2 0.0 2 23 365 386 364 386 0.94 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF574-204 - 896 1.5e-62 204.7 122.7 8 20 0.0037 3.5 8.3 0.9 6 23 396 413 396 413 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF574-204 - 896 1.5e-62 204.7 122.7 9 20 0.00023 0.22 12.1 0.9 1 23 466 489 466 489 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF574-204 - 896 1.5e-62 204.7 122.7 10 20 4.9e-07 0.00047 20.5 6.6 1 23 495 517 495 517 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF574-204 - 896 1.5e-62 204.7 122.7 11 20 6.9e-09 6.5e-06 26.3 0.2 1 23 523 545 523 545 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF574-204 - 896 1.5e-62 204.7 122.7 12 20 9.2e-09 8.7e-06 25.9 0.6 1 23 551 573 551 573 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF574-204 - 896 1.5e-62 204.7 122.7 13 20 0.0074 7 7.3 5.4 1 23 579 601 579 601 0.95 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF574-204 - 896 1.5e-62 204.7 122.7 14 20 0.00038 0.36 11.4 0.3 1 23 607 630 607 630 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF574-204 - 896 1.5e-62 204.7 122.7 15 20 0.009 8.5 7.1 0.7 1 20 636 655 636 657 0.92 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF574-204 - 896 1.5e-62 204.7 122.7 16 20 0.0062 5.9 7.6 0.0 1 23 667 689 667 689 0.91 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF574-204 - 896 1.5e-62 204.7 122.7 17 20 1e-05 0.0097 16.3 0.6 2 23 739 760 738 760 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF574-204 - 896 1.5e-62 204.7 122.7 18 20 6.1e-09 5.7e-06 26.5 1.7 1 23 766 788 766 788 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF574-204 - 896 1.5e-62 204.7 122.7 19 20 0.00042 0.4 11.2 0.0 1 23 794 816 794 816 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF574-204 - 896 1.5e-62 204.7 122.7 20 20 7.7e-09 7.2e-06 26.2 1.9 1 23 822 844 822 844 0.99 Zinc finger, C2H2 type zf-H2C2_2 PF13465.6 26 ZNF574-204 - 896 2.7e-53 176.1 119.7 1 21 0.61 5.8e+02 1.2 0.1 14 22 15 23 10 27 0.80 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF574-204 - 896 2.7e-53 176.1 119.7 2 21 0.91 8.6e+02 0.7 0.1 11 21 72 82 68 83 0.86 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF574-204 - 896 2.7e-53 176.1 119.7 3 21 2.7 2.5e+03 -0.8 0.1 15 25 126 136 120 137 0.79 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF574-204 - 896 2.7e-53 176.1 119.7 4 21 0.51 4.8e+02 1.5 0.1 15 22 214 221 207 223 0.83 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF574-204 - 896 2.7e-53 176.1 119.7 5 21 2.4 2.2e+03 -0.6 0.1 16 25 310 319 306 320 0.80 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF574-204 - 896 2.7e-53 176.1 119.7 6 21 2.4e-05 0.023 15.1 0.2 2 24 324 345 323 347 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF574-204 - 896 2.7e-53 176.1 119.7 7 21 0.0015 1.4 9.5 0.0 2 26 351 375 350 375 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF574-204 - 896 2.7e-53 176.1 119.7 8 21 0.19 1.8e+02 2.8 0.6 4 26 381 402 379 402 0.78 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF574-204 - 896 2.7e-53 176.1 119.7 9 21 0.7 6.6e+02 1.0 0.0 15 25 466 476 458 477 0.84 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF574-204 - 896 2.7e-53 176.1 119.7 10 21 3.7e-06 0.0035 17.7 3.1 2 26 481 506 480 506 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF574-204 - 896 2.7e-53 176.1 119.7 11 21 5.5e-09 5.2e-06 26.6 2.0 2 25 510 533 509 534 0.89 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF574-204 - 896 2.7e-53 176.1 119.7 12 21 9.8e-10 9.3e-07 29.0 0.2 1 25 537 561 537 562 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF574-204 - 896 2.7e-53 176.1 119.7 13 21 0.00033 0.31 11.5 2.7 2 24 566 588 565 590 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF574-204 - 896 2.7e-53 176.1 119.7 14 21 2.7e-06 0.0025 18.1 2.9 4 24 596 616 593 617 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF574-204 - 896 2.7e-53 176.1 119.7 15 21 0.0002 0.19 12.2 0.1 2 24 622 645 622 647 0.85 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF574-204 - 896 2.7e-53 176.1 119.7 16 21 0.12 1.2e+02 3.4 0.1 12 23 664 675 651 678 0.76 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF574-204 - 896 2.7e-53 176.1 119.7 17 21 0.055 52 4.5 0.1 15 26 738 749 733 749 0.87 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF574-204 - 896 2.7e-53 176.1 119.7 18 21 7.5e-11 7e-08 32.6 0.2 1 25 752 776 752 777 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF574-204 - 896 2.7e-53 176.1 119.7 19 21 3.8e-10 3.6e-07 30.3 0.7 1 25 780 804 780 804 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF574-204 - 896 2.7e-53 176.1 119.7 20 21 1.6e-09 1.5e-06 28.3 0.3 2 25 809 832 808 833 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF574-204 - 896 2.7e-53 176.1 119.7 21 21 0.34 3.2e+02 2.0 1.0 1 11 836 846 836 849 0.88 Zinc-finger double domain zf-C2H2_4 PF13894.6 24 ZNF574-204 - 896 3.7e-51 167.3 126.1 1 20 0.0095 9 7.4 0.1 1 23 16 38 16 39 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF574-204 - 896 3.7e-51 167.3 126.1 2 20 0.0031 2.9 9.0 0.1 1 23 76 98 76 99 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF574-204 - 896 3.7e-51 167.3 126.1 3 20 0.00063 0.59 11.1 0.2 1 23 126 148 126 149 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF574-204 - 896 3.7e-51 167.3 126.1 4 20 0.0022 2.1 9.4 0.5 1 23 214 236 214 237 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF574-204 - 896 3.7e-51 167.3 126.1 5 20 0.00015 0.14 13.0 1.7 3 23 311 331 309 332 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF574-204 - 896 3.7e-51 167.3 126.1 6 20 6.2e-07 0.00058 20.5 0.3 1 23 336 358 336 359 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF574-204 - 896 3.7e-51 167.3 126.1 7 20 0.0037 3.5 8.7 0.0 1 23 364 386 364 387 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF574-204 - 896 3.7e-51 167.3 126.1 8 20 0.0063 5.9 8.0 1.6 6 23 396 413 392 414 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF574-204 - 896 3.7e-51 167.3 126.1 9 20 0.0013 1.2 10.2 0.9 1 24 466 489 466 489 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF574-204 - 896 3.7e-51 167.3 126.1 10 20 5.7e-06 0.0054 17.5 4.8 1 23 495 517 495 518 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF574-204 - 896 3.7e-51 167.3 126.1 11 20 8.9e-07 0.00084 20.0 0.2 1 23 523 545 523 546 0.97 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF574-204 - 896 3.7e-51 167.3 126.1 12 20 3.1e-05 0.029 15.2 0.3 1 23 551 573 551 574 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF574-204 - 896 3.7e-51 167.3 126.1 13 20 0.0026 2.5 9.2 4.1 1 24 579 601 579 602 0.89 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF574-204 - 896 3.7e-51 167.3 126.1 14 20 0.0017 1.6 9.8 0.5 1 24 607 630 607 630 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF574-204 - 896 3.7e-51 167.3 126.1 15 20 0.00092 0.87 10.6 0.3 1 19 636 654 636 655 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF574-204 - 896 3.7e-51 167.3 126.1 16 20 0.0071 6.7 7.8 0.0 1 23 667 689 667 690 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF574-204 - 896 3.7e-51 167.3 126.1 17 20 8.3e-05 0.079 13.8 0.7 2 23 739 760 738 761 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF574-204 - 896 3.7e-51 167.3 126.1 18 20 9.7e-06 0.0092 16.7 1.1 1 23 766 788 766 789 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF574-204 - 896 3.7e-51 167.3 126.1 19 20 0.0014 1.3 10.0 0.1 1 23 794 816 794 817 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF574-204 - 896 3.7e-51 167.3 126.1 20 20 4.2e-06 0.004 17.9 1.5 1 23 822 844 822 845 0.97 C2H2-type zinc finger zf-C2H2_jaz PF12171.8 27 ZNF574-204 - 896 7.1e-29 99.5 42.5 1 18 2.7 2.5e+03 -1.1 0.2 2 24 16 38 15 39 0.79 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF574-204 - 896 7.1e-29 99.5 42.5 2 18 0.00021 0.2 12.0 0.5 2 24 126 148 125 149 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF574-204 - 896 7.1e-29 99.5 42.5 3 18 2.8e-05 0.026 14.8 0.2 2 24 309 331 308 332 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF574-204 - 896 7.1e-29 99.5 42.5 4 18 5.7e-06 0.0054 17.0 0.0 2 21 336 355 335 355 0.96 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF574-204 - 896 7.1e-29 99.5 42.5 5 18 0.3 2.8e+02 1.9 0.0 4 21 366 383 363 384 0.91 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF574-204 - 896 7.1e-29 99.5 42.5 6 18 1.2 1.1e+03 0.0 0.0 7 24 396 413 394 414 0.88 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF574-204 - 896 7.1e-29 99.5 42.5 7 18 0.00034 0.32 11.3 0.0 2 22 466 486 465 486 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF574-204 - 896 7.1e-29 99.5 42.5 8 18 7.3e-05 0.068 13.5 2.9 2 24 495 517 494 517 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF574-204 - 896 7.1e-29 99.5 42.5 9 18 0.0024 2.3 8.6 0.0 2 22 523 543 522 545 0.89 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF574-204 - 896 7.1e-29 99.5 42.5 10 18 0.21 2e+02 2.5 0.0 2 20 551 569 550 571 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF574-204 - 896 7.1e-29 99.5 42.5 11 18 0.21 2e+02 2.4 0.1 2 20 579 597 578 599 0.86 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF574-204 - 896 7.1e-29 99.5 42.5 12 18 2 1.8e+03 -0.6 0.0 2 11 607 616 606 626 0.82 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF574-204 - 896 7.1e-29 99.5 42.5 13 18 0.79 7.5e+02 0.6 0.0 2 20 636 654 635 655 0.90 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF574-204 - 896 7.1e-29 99.5 42.5 14 18 0.013 12 6.3 0.0 2 21 667 686 666 687 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF574-204 - 896 7.1e-29 99.5 42.5 15 18 0.0001 0.098 13.0 0.0 2 21 738 757 737 758 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF574-204 - 896 7.1e-29 99.5 42.5 16 18 0.37 3.5e+02 1.7 0.0 2 21 766 785 765 786 0.88 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF574-204 - 896 7.1e-29 99.5 42.5 17 18 0.19 1.8e+02 2.6 0.0 2 12 794 804 793 814 0.82 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF574-204 - 896 7.1e-29 99.5 42.5 18 18 0.98 9.2e+02 0.3 1.9 2 24 822 844 821 849 0.84 Zinc-finger double-stranded RNA-binding zf-C2H2_6 PF13912.6 27 ZNF574-204 - 896 1.7e-16 59.7 107.7 1 19 0.0026 2.5 8.2 0.1 1 20 15 34 15 40 0.79 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF574-204 - 896 1.7e-16 59.7 107.7 2 19 0.007 6.6 6.9 0.5 1 25 125 149 125 151 0.91 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF574-204 - 896 1.7e-16 59.7 107.7 3 19 0.013 13 6.0 0.5 2 12 214 224 213 224 0.91 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF574-204 - 896 1.7e-16 59.7 107.7 4 19 0.23 2.2e+02 2.0 1.4 4 26 311 333 311 334 0.89 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF574-204 - 896 1.7e-16 59.7 107.7 5 19 5.9e-05 0.055 13.5 0.1 1 21 335 355 335 361 0.83 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF574-204 - 896 1.7e-16 59.7 107.7 6 19 0.38 3.6e+02 1.3 0.1 1 24 363 386 363 388 0.89 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF574-204 - 896 1.7e-16 59.7 107.7 7 19 2.3 2.2e+03 -1.2 0.2 7 24 396 413 395 413 0.66 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF574-204 - 896 1.7e-16 59.7 107.7 8 19 0.16 1.5e+02 2.5 0.2 2 13 466 477 465 489 0.88 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF574-204 - 896 1.7e-16 59.7 107.7 9 19 0.0031 2.9 8.0 2.7 1 24 494 517 494 520 0.76 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF574-204 - 896 1.7e-16 59.7 107.7 10 19 0.026 24 5.1 0.0 2 24 523 545 523 548 0.89 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF574-204 - 896 1.7e-16 59.7 107.7 11 19 1.1 1.1e+03 -0.2 0.2 2 12 551 561 551 570 0.81 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF574-204 - 896 1.7e-16 59.7 107.7 12 19 1.3e-05 0.012 15.6 2.4 2 24 579 601 579 604 0.95 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF574-204 - 896 1.7e-16 59.7 107.7 13 19 0.91 8.6e+02 0.1 0.7 2 11 607 616 607 616 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF574-204 - 896 1.7e-16 59.7 107.7 14 19 0.00044 0.41 10.7 0.3 2 21 636 655 636 657 0.91 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF574-204 - 896 1.7e-16 59.7 107.7 15 19 0.43 4e+02 1.2 0.1 1 9 666 674 666 689 0.89 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF574-204 - 896 1.7e-16 59.7 107.7 16 19 3e-06 0.0028 17.6 0.6 3 24 739 760 739 763 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF574-204 - 896 1.7e-16 59.7 107.7 17 19 0.085 81 3.4 0.4 2 22 766 786 766 790 0.78 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF574-204 - 896 1.7e-16 59.7 107.7 18 19 0.074 70 3.6 0.1 2 11 794 803 794 816 0.88 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF574-204 - 896 1.7e-16 59.7 107.7 19 19 1.3e-06 0.0012 18.7 2.2 2 26 822 846 822 847 0.93 C2H2-type zinc finger zf_UBZ PF18439.1 32 ZNF574-204 - 896 1.1e-13 50.5 63.1 1 19 0.021 20 4.9 0.1 3 11 16 24 14 35 0.84 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF574-204 - 896 1.1e-13 50.5 63.1 2 19 0.00054 0.51 10.0 0.2 2 21 75 95 74 99 0.88 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF574-204 - 896 1.1e-13 50.5 63.1 3 19 0.66 6.2e+02 0.1 0.0 2 16 125 139 125 142 0.85 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF574-204 - 896 1.1e-13 50.5 63.1 4 19 0.00045 0.43 10.2 0.2 3 21 214 233 213 233 0.96 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF574-204 - 896 1.1e-13 50.5 63.1 5 19 0.005 4.7 6.9 0.3 3 21 309 328 307 328 0.91 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF574-204 - 896 1.1e-13 50.5 63.1 6 19 0.021 20 4.9 0.0 3 21 336 355 334 355 0.92 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF574-204 - 896 1.1e-13 50.5 63.1 7 19 1.4 1.3e+03 -0.9 0.0 2 10 363 371 362 379 0.82 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF574-204 - 896 1.1e-13 50.5 63.1 8 19 2.8 2.7e+03 -1.9 0.0 2 20 465 484 464 485 0.75 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF574-204 - 896 1.1e-13 50.5 63.1 9 19 0.089 84 2.9 0.2 3 13 495 505 493 513 0.85 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF574-204 - 896 1.1e-13 50.5 63.1 10 19 0.013 12 5.6 0.1 3 15 523 535 521 542 0.80 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF574-204 - 896 1.1e-13 50.5 63.1 11 19 0.038 36 4.1 0.0 3 20 551 569 549 570 0.83 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF574-204 - 896 1.1e-13 50.5 63.1 12 19 0.23 2.2e+02 1.6 0.1 3 12 579 588 578 597 0.83 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF574-204 - 896 1.1e-13 50.5 63.1 13 19 1.4 1.3e+03 -1.0 0.1 3 15 607 619 606 625 0.79 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF574-204 - 896 1.1e-13 50.5 63.1 14 19 0.0056 5.3 6.7 0.1 4 20 637 654 634 655 0.91 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF574-204 - 896 1.1e-13 50.5 63.1 15 19 0.062 59 3.4 0.0 3 21 667 686 665 686 0.83 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF574-204 - 896 1.1e-13 50.5 63.1 16 19 0.023 22 4.8 0.1 4 20 739 756 737 757 0.82 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF574-204 - 896 1.1e-13 50.5 63.1 17 19 0.0071 6.7 6.4 0.1 3 14 766 777 764 784 0.84 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF574-204 - 896 1.1e-13 50.5 63.1 18 19 0.0075 7.1 6.3 0.0 3 20 794 812 792 813 0.92 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF574-204 - 896 1.1e-13 50.5 63.1 19 19 0.021 20 4.9 0.2 3 11 822 830 820 835 0.87 Ubiquitin-Binding Zinc Finger zf-met PF12874.7 25 ZNF574-204 - 896 1.2e-13 50.9 60.3 1 15 0.67 6.3e+02 1.0 0.6 1 23 16 38 16 39 0.90 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF574-204 - 896 1.2e-13 50.9 60.3 2 15 2.3 2.1e+03 -0.7 0.1 1 19 76 94 76 96 0.84 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF574-204 - 896 1.2e-13 50.9 60.3 3 15 0.02 19 5.8 0.5 1 21 126 146 126 148 0.91 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF574-204 - 896 1.2e-13 50.9 60.3 4 15 1.5e-05 0.014 15.8 0.4 2 24 310 332 309 332 0.95 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF574-204 - 896 1.2e-13 50.9 60.3 5 15 2.9e-06 0.0027 18.0 0.0 1 20 336 355 336 356 0.96 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF574-204 - 896 1.2e-13 50.9 60.3 6 15 3.3 3.1e+03 -1.2 0.1 1 19 466 484 466 486 0.77 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF574-204 - 896 1.2e-13 50.9 60.3 7 15 0.00016 0.16 12.4 2.8 2 22 496 516 495 518 0.91 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF574-204 - 896 1.2e-13 50.9 60.3 8 15 0.0069 6.5 7.3 0.0 3 19 525 541 523 542 0.93 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF574-204 - 896 1.2e-13 50.9 60.3 9 15 0.034 32 5.1 0.0 1 19 551 569 551 570 0.96 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF574-204 - 896 1.2e-13 50.9 60.3 10 15 3.8 3.6e+03 -1.4 0.1 1 10 579 588 579 597 0.82 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF574-204 - 896 1.2e-13 50.9 60.3 11 15 0.027 26 5.4 0.0 1 20 667 686 667 689 0.92 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF574-204 - 896 1.2e-13 50.9 60.3 12 15 0.0017 1.6 9.3 0.4 2 19 739 756 738 761 0.89 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF574-204 - 896 1.2e-13 50.9 60.3 13 15 0.86 8.2e+02 0.6 0.0 3 19 768 784 766 786 0.91 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF574-204 - 896 1.2e-13 50.9 60.3 14 15 0.41 3.8e+02 1.7 0.1 1 10 794 803 794 804 0.81 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF574-204 - 896 1.2e-13 50.9 60.3 15 15 1.7 1.6e+03 -0.3 0.5 1 19 822 840 822 844 0.80 Zinc-finger of C2H2 type zf-C2H2_11 PF16622.5 29 ZNF574-204 - 896 1.3e-08 34.4 85.6 1 17 0.013 12 5.7 0.5 2 11 73 82 72 91 0.88 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF574-204 - 896 1.3e-08 34.4 85.6 2 17 0.013 13 5.7 0.1 6 17 127 138 121 146 0.88 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF574-204 - 896 1.3e-08 34.4 85.6 3 17 5.5 5.2e+03 -2.7 1.0 7 25 311 329 310 329 0.89 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF574-204 - 896 1.3e-08 34.4 85.6 4 17 0.0028 2.7 7.8 0.0 5 24 336 355 333 356 0.93 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF574-204 - 896 1.3e-08 34.4 85.6 5 17 0.047 44 3.9 0.1 7 24 366 383 361 385 0.76 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF574-204 - 896 1.3e-08 34.4 85.6 6 17 4.9e-06 0.0047 16.7 0.6 4 28 465 489 463 490 0.96 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF574-204 - 896 1.3e-08 34.4 85.6 7 17 3.1 2.9e+03 -1.9 0.2 5 14 495 504 494 514 0.86 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF574-204 - 896 1.3e-08 34.4 85.6 8 17 0.1 99 2.8 0.0 7 24 525 542 523 545 0.91 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF574-204 - 896 1.3e-08 34.4 85.6 9 17 0.00052 0.49 10.2 0.6 5 25 551 571 549 573 0.91 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF574-204 - 896 1.3e-08 34.4 85.6 10 17 0.019 18 5.2 0.2 5 14 579 588 578 598 0.87 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF574-204 - 896 1.3e-08 34.4 85.6 11 17 0.32 3e+02 1.3 0.3 5 28 607 630 606 630 0.75 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF574-204 - 896 1.3e-08 34.4 85.6 12 17 0.00086 0.81 9.5 1.4 5 24 636 655 634 657 0.95 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF574-204 - 896 1.3e-08 34.4 85.6 13 17 3.7 3.5e+03 -2.1 0.2 7 13 669 675 667 685 0.60 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF574-204 - 896 1.3e-08 34.4 85.6 14 17 0.00047 0.44 10.3 0.4 7 26 740 759 737 760 0.94 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF574-204 - 896 1.3e-08 34.4 85.6 15 17 0.79 7.4e+02 0.0 0.3 7 25 768 786 766 788 0.88 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF574-204 - 896 1.3e-08 34.4 85.6 16 17 0.0038 3.6 7.4 0.2 7 26 796 815 794 816 0.94 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF574-204 - 896 1.3e-08 34.4 85.6 17 17 0.16 1.6e+02 2.2 0.1 7 24 824 841 821 843 0.91 zinc-finger C2H2-type # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF574-204.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF574-204.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF574-204.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF574-204.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF574-204.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:09:47 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-C2H2 PF00096.26 23 ZNF576-201 - 170 3.2e-16 58.8 19.1 1 4 0.0016 0.87 10.2 1.6 2 23 35 57 35 57 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF576-201 - 170 3.2e-16 58.8 19.1 2 4 2.4e-06 0.0013 19.1 0.7 1 23 71 93 71 93 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF576-201 - 170 3.2e-16 58.8 19.1 3 4 1.1e-08 5.9e-06 26.5 0.3 1 23 112 134 112 134 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF576-201 - 170 3.2e-16 58.8 19.1 4 4 6.4e-05 0.035 14.6 0.2 1 23 143 165 143 165 0.96 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZNF576-201 - 170 6.5e-15 54.5 16.1 1 4 0.0011 0.6 11.1 0.8 2 24 35 57 34 57 0.90 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF576-201 - 170 6.5e-15 54.5 16.1 2 4 3.1e-05 0.017 15.9 0.5 1 23 71 93 71 94 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF576-201 - 170 6.5e-15 54.5 16.1 3 4 7.3e-07 0.0004 21.0 0.2 1 23 112 134 112 135 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF576-201 - 170 6.5e-15 54.5 16.1 4 4 2.4e-05 0.013 16.3 0.1 1 23 143 165 143 166 0.95 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF576-201 - 170 1e-07 31.7 0.6 1 5 6.3 3.4e+03 -1.8 0.2 3 11 35 43 35 44 0.81 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF576-201 - 170 1e-07 31.7 0.6 2 5 7.3 4e+03 -2.0 0.5 20 25 52 58 51 59 0.67 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF576-201 - 170 1e-07 31.7 0.6 3 5 1.3e-07 6.8e-05 22.8 0.1 2 24 71 93 70 95 0.96 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF576-201 - 170 1e-07 31.7 0.6 4 5 6.8e-05 0.037 14.0 0.1 2 24 112 134 111 136 0.91 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF576-201 - 170 1e-07 31.7 0.6 5 5 0.044 24 5.1 0.3 2 12 143 153 142 167 0.74 C2H2-type zinc finger zf-C2H2_11 PF16622.5 29 ZNF576-201 - 170 2.6e-07 30.3 10.8 1 4 0.082 45 3.9 0.2 3 24 32 53 30 57 0.82 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF576-201 - 170 2.6e-07 30.3 10.8 2 4 0.25 1.4e+02 2.4 0.4 7 23 73 89 71 91 0.85 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF576-201 - 170 2.6e-07 30.3 10.8 3 4 1.6e-06 0.00089 19.0 0.1 4 26 111 133 109 134 0.92 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF576-201 - 170 2.6e-07 30.3 10.8 4 4 0.0011 0.58 10.0 0.1 4 24 142 162 140 165 0.89 zinc-finger C2H2-type # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF576-201.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF576-201.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF576-201.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF576-201.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF576-201.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:09:47 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-C2H2 PF00096.26 23 ZNF576-202 - 170 3.2e-16 58.8 19.1 1 4 0.0016 0.87 10.2 1.6 2 23 35 57 35 57 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF576-202 - 170 3.2e-16 58.8 19.1 2 4 2.4e-06 0.0013 19.1 0.7 1 23 71 93 71 93 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF576-202 - 170 3.2e-16 58.8 19.1 3 4 1.1e-08 5.9e-06 26.5 0.3 1 23 112 134 112 134 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF576-202 - 170 3.2e-16 58.8 19.1 4 4 6.4e-05 0.035 14.6 0.2 1 23 143 165 143 165 0.96 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZNF576-202 - 170 6.5e-15 54.5 16.1 1 4 0.0011 0.6 11.1 0.8 2 24 35 57 34 57 0.90 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF576-202 - 170 6.5e-15 54.5 16.1 2 4 3.1e-05 0.017 15.9 0.5 1 23 71 93 71 94 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF576-202 - 170 6.5e-15 54.5 16.1 3 4 7.3e-07 0.0004 21.0 0.2 1 23 112 134 112 135 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF576-202 - 170 6.5e-15 54.5 16.1 4 4 2.4e-05 0.013 16.3 0.1 1 23 143 165 143 166 0.95 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF576-202 - 170 1e-07 31.7 0.6 1 5 6.3 3.4e+03 -1.8 0.2 3 11 35 43 35 44 0.81 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF576-202 - 170 1e-07 31.7 0.6 2 5 7.3 4e+03 -2.0 0.5 20 25 52 58 51 59 0.67 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF576-202 - 170 1e-07 31.7 0.6 3 5 1.3e-07 6.8e-05 22.8 0.1 2 24 71 93 70 95 0.96 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF576-202 - 170 1e-07 31.7 0.6 4 5 6.8e-05 0.037 14.0 0.1 2 24 112 134 111 136 0.91 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF576-202 - 170 1e-07 31.7 0.6 5 5 0.044 24 5.1 0.3 2 12 143 153 142 167 0.74 C2H2-type zinc finger zf-C2H2_11 PF16622.5 29 ZNF576-202 - 170 2.6e-07 30.3 10.8 1 4 0.082 45 3.9 0.2 3 24 32 53 30 57 0.82 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF576-202 - 170 2.6e-07 30.3 10.8 2 4 0.25 1.4e+02 2.4 0.4 7 23 73 89 71 91 0.85 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF576-202 - 170 2.6e-07 30.3 10.8 3 4 1.6e-06 0.00089 19.0 0.1 4 26 111 133 109 134 0.92 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF576-202 - 170 2.6e-07 30.3 10.8 4 4 0.0011 0.58 10.0 0.1 4 24 142 162 140 165 0.89 zinc-finger C2H2-type # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF576-202.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF576-202.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF576-202.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF576-202.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF576-202.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:09:48 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-C2H2 PF00096.26 23 ZNF576-203 - 170 3.2e-16 58.8 19.1 1 4 0.0016 0.87 10.2 1.6 2 23 35 57 35 57 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF576-203 - 170 3.2e-16 58.8 19.1 2 4 2.4e-06 0.0013 19.1 0.7 1 23 71 93 71 93 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF576-203 - 170 3.2e-16 58.8 19.1 3 4 1.1e-08 5.9e-06 26.5 0.3 1 23 112 134 112 134 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF576-203 - 170 3.2e-16 58.8 19.1 4 4 6.4e-05 0.035 14.6 0.2 1 23 143 165 143 165 0.96 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZNF576-203 - 170 6.5e-15 54.5 16.1 1 4 0.0011 0.6 11.1 0.8 2 24 35 57 34 57 0.90 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF576-203 - 170 6.5e-15 54.5 16.1 2 4 3.1e-05 0.017 15.9 0.5 1 23 71 93 71 94 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF576-203 - 170 6.5e-15 54.5 16.1 3 4 7.3e-07 0.0004 21.0 0.2 1 23 112 134 112 135 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF576-203 - 170 6.5e-15 54.5 16.1 4 4 2.4e-05 0.013 16.3 0.1 1 23 143 165 143 166 0.95 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF576-203 - 170 1e-07 31.7 0.6 1 5 6.3 3.4e+03 -1.8 0.2 3 11 35 43 35 44 0.81 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF576-203 - 170 1e-07 31.7 0.6 2 5 7.3 4e+03 -2.0 0.5 20 25 52 58 51 59 0.67 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF576-203 - 170 1e-07 31.7 0.6 3 5 1.3e-07 6.8e-05 22.8 0.1 2 24 71 93 70 95 0.96 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF576-203 - 170 1e-07 31.7 0.6 4 5 6.8e-05 0.037 14.0 0.1 2 24 112 134 111 136 0.91 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF576-203 - 170 1e-07 31.7 0.6 5 5 0.044 24 5.1 0.3 2 12 143 153 142 167 0.74 C2H2-type zinc finger zf-C2H2_11 PF16622.5 29 ZNF576-203 - 170 2.6e-07 30.3 10.8 1 4 0.082 45 3.9 0.2 3 24 32 53 30 57 0.82 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF576-203 - 170 2.6e-07 30.3 10.8 2 4 0.25 1.4e+02 2.4 0.4 7 23 73 89 71 91 0.85 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF576-203 - 170 2.6e-07 30.3 10.8 3 4 1.6e-06 0.00089 19.0 0.1 4 26 111 133 109 134 0.92 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF576-203 - 170 2.6e-07 30.3 10.8 4 4 0.0011 0.58 10.0 0.1 4 24 142 162 140 165 0.89 zinc-finger C2H2-type # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF576-203.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF576-203.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF576-203.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF576-203.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF576-203.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:09:48 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-C2H2 PF00096.26 23 ZNF576-204 - 170 3.2e-16 58.8 19.1 1 4 0.0016 0.87 10.2 1.6 2 23 35 57 35 57 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF576-204 - 170 3.2e-16 58.8 19.1 2 4 2.4e-06 0.0013 19.1 0.7 1 23 71 93 71 93 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF576-204 - 170 3.2e-16 58.8 19.1 3 4 1.1e-08 5.9e-06 26.5 0.3 1 23 112 134 112 134 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF576-204 - 170 3.2e-16 58.8 19.1 4 4 6.4e-05 0.035 14.6 0.2 1 23 143 165 143 165 0.96 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZNF576-204 - 170 6.5e-15 54.5 16.1 1 4 0.0011 0.6 11.1 0.8 2 24 35 57 34 57 0.90 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF576-204 - 170 6.5e-15 54.5 16.1 2 4 3.1e-05 0.017 15.9 0.5 1 23 71 93 71 94 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF576-204 - 170 6.5e-15 54.5 16.1 3 4 7.3e-07 0.0004 21.0 0.2 1 23 112 134 112 135 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF576-204 - 170 6.5e-15 54.5 16.1 4 4 2.4e-05 0.013 16.3 0.1 1 23 143 165 143 166 0.95 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF576-204 - 170 1e-07 31.7 0.6 1 5 6.3 3.4e+03 -1.8 0.2 3 11 35 43 35 44 0.81 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF576-204 - 170 1e-07 31.7 0.6 2 5 7.3 4e+03 -2.0 0.5 20 25 52 58 51 59 0.67 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF576-204 - 170 1e-07 31.7 0.6 3 5 1.3e-07 6.8e-05 22.8 0.1 2 24 71 93 70 95 0.96 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF576-204 - 170 1e-07 31.7 0.6 4 5 6.8e-05 0.037 14.0 0.1 2 24 112 134 111 136 0.91 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF576-204 - 170 1e-07 31.7 0.6 5 5 0.044 24 5.1 0.3 2 12 143 153 142 167 0.74 C2H2-type zinc finger zf-C2H2_11 PF16622.5 29 ZNF576-204 - 170 2.6e-07 30.3 10.8 1 4 0.082 45 3.9 0.2 3 24 32 53 30 57 0.82 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF576-204 - 170 2.6e-07 30.3 10.8 2 4 0.25 1.4e+02 2.4 0.4 7 23 73 89 71 91 0.85 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF576-204 - 170 2.6e-07 30.3 10.8 3 4 1.6e-06 0.00089 19.0 0.1 4 26 111 133 109 134 0.92 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF576-204 - 170 2.6e-07 30.3 10.8 4 4 0.0011 0.58 10.0 0.1 4 24 142 162 140 165 0.89 zinc-finger C2H2-type # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF576-204.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF576-204.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF576-204.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF576-204.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF576-204.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:09:49 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-C2H2 PF00096.26 23 ZNF576-205 - 170 3.2e-16 58.8 19.1 1 4 0.0016 0.87 10.2 1.6 2 23 35 57 35 57 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF576-205 - 170 3.2e-16 58.8 19.1 2 4 2.4e-06 0.0013 19.1 0.7 1 23 71 93 71 93 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF576-205 - 170 3.2e-16 58.8 19.1 3 4 1.1e-08 5.9e-06 26.5 0.3 1 23 112 134 112 134 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF576-205 - 170 3.2e-16 58.8 19.1 4 4 6.4e-05 0.035 14.6 0.2 1 23 143 165 143 165 0.96 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZNF576-205 - 170 6.5e-15 54.5 16.1 1 4 0.0011 0.6 11.1 0.8 2 24 35 57 34 57 0.90 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF576-205 - 170 6.5e-15 54.5 16.1 2 4 3.1e-05 0.017 15.9 0.5 1 23 71 93 71 94 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF576-205 - 170 6.5e-15 54.5 16.1 3 4 7.3e-07 0.0004 21.0 0.2 1 23 112 134 112 135 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF576-205 - 170 6.5e-15 54.5 16.1 4 4 2.4e-05 0.013 16.3 0.1 1 23 143 165 143 166 0.95 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF576-205 - 170 1e-07 31.7 0.6 1 5 6.3 3.4e+03 -1.8 0.2 3 11 35 43 35 44 0.81 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF576-205 - 170 1e-07 31.7 0.6 2 5 7.3 4e+03 -2.0 0.5 20 25 52 58 51 59 0.67 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF576-205 - 170 1e-07 31.7 0.6 3 5 1.3e-07 6.8e-05 22.8 0.1 2 24 71 93 70 95 0.96 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF576-205 - 170 1e-07 31.7 0.6 4 5 6.8e-05 0.037 14.0 0.1 2 24 112 134 111 136 0.91 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF576-205 - 170 1e-07 31.7 0.6 5 5 0.044 24 5.1 0.3 2 12 143 153 142 167 0.74 C2H2-type zinc finger zf-C2H2_11 PF16622.5 29 ZNF576-205 - 170 2.6e-07 30.3 10.8 1 4 0.082 45 3.9 0.2 3 24 32 53 30 57 0.82 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF576-205 - 170 2.6e-07 30.3 10.8 2 4 0.25 1.4e+02 2.4 0.4 7 23 73 89 71 91 0.85 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF576-205 - 170 2.6e-07 30.3 10.8 3 4 1.6e-06 0.00089 19.0 0.1 4 26 111 133 109 134 0.92 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF576-205 - 170 2.6e-07 30.3 10.8 4 4 0.0011 0.58 10.0 0.1 4 24 142 162 140 165 0.89 zinc-finger C2H2-type # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF576-205.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF576-205.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF576-205.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF576-205.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF576-205.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:09:49 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-C2H2 PF00096.26 23 ZNF576-206 - 170 3.2e-16 58.8 19.1 1 4 0.0016 0.87 10.2 1.6 2 23 35 57 35 57 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF576-206 - 170 3.2e-16 58.8 19.1 2 4 2.4e-06 0.0013 19.1 0.7 1 23 71 93 71 93 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF576-206 - 170 3.2e-16 58.8 19.1 3 4 1.1e-08 5.9e-06 26.5 0.3 1 23 112 134 112 134 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF576-206 - 170 3.2e-16 58.8 19.1 4 4 6.4e-05 0.035 14.6 0.2 1 23 143 165 143 165 0.96 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZNF576-206 - 170 6.5e-15 54.5 16.1 1 4 0.0011 0.6 11.1 0.8 2 24 35 57 34 57 0.90 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF576-206 - 170 6.5e-15 54.5 16.1 2 4 3.1e-05 0.017 15.9 0.5 1 23 71 93 71 94 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF576-206 - 170 6.5e-15 54.5 16.1 3 4 7.3e-07 0.0004 21.0 0.2 1 23 112 134 112 135 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF576-206 - 170 6.5e-15 54.5 16.1 4 4 2.4e-05 0.013 16.3 0.1 1 23 143 165 143 166 0.95 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF576-206 - 170 1e-07 31.7 0.6 1 5 6.3 3.4e+03 -1.8 0.2 3 11 35 43 35 44 0.81 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF576-206 - 170 1e-07 31.7 0.6 2 5 7.3 4e+03 -2.0 0.5 20 25 52 58 51 59 0.67 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF576-206 - 170 1e-07 31.7 0.6 3 5 1.3e-07 6.8e-05 22.8 0.1 2 24 71 93 70 95 0.96 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF576-206 - 170 1e-07 31.7 0.6 4 5 6.8e-05 0.037 14.0 0.1 2 24 112 134 111 136 0.91 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF576-206 - 170 1e-07 31.7 0.6 5 5 0.044 24 5.1 0.3 2 12 143 153 142 167 0.74 C2H2-type zinc finger zf-C2H2_11 PF16622.5 29 ZNF576-206 - 170 2.6e-07 30.3 10.8 1 4 0.082 45 3.9 0.2 3 24 32 53 30 57 0.82 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF576-206 - 170 2.6e-07 30.3 10.8 2 4 0.25 1.4e+02 2.4 0.4 7 23 73 89 71 91 0.85 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF576-206 - 170 2.6e-07 30.3 10.8 3 4 1.6e-06 0.00089 19.0 0.1 4 26 111 133 109 134 0.92 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF576-206 - 170 2.6e-07 30.3 10.8 4 4 0.0011 0.58 10.0 0.1 4 24 142 162 140 165 0.89 zinc-finger C2H2-type # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF576-206.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF576-206.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF576-206.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF576-206.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF576-206.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:09:49 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF576-207.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF576-207.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF576-207.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF576-207.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF576-207.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:09:50 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZNF577-201 - 485 3.6e-61 201.0 47.2 1 9 0.00025 0.18 12.3 0.0 12 25 155 168 153 169 0.89 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF577-201 - 485 3.6e-61 201.0 47.2 2 9 2.9e-05 0.022 15.2 0.2 2 24 173 195 172 195 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF577-201 - 485 3.6e-61 201.0 47.2 3 9 7.6e-12 5.7e-09 36.0 1.2 2 25 201 224 200 225 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF577-201 - 485 3.6e-61 201.0 47.2 4 9 9.3e-12 7e-09 35.7 0.7 2 25 229 252 228 253 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF577-201 - 485 3.6e-61 201.0 47.2 5 9 2.2e-10 1.6e-07 31.4 0.2 2 25 257 280 256 281 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF577-201 - 485 3.6e-61 201.0 47.2 6 9 9.7e-10 7.3e-07 29.3 0.8 2 24 285 307 284 308 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF577-201 - 485 3.6e-61 201.0 47.2 7 9 5.6e-13 4.2e-10 39.6 0.4 1 25 312 336 312 337 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF577-201 - 485 3.6e-61 201.0 47.2 8 9 3.7e-10 2.8e-07 30.7 1.0 2 26 341 365 340 365 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF577-201 - 485 3.6e-61 201.0 47.2 9 9 2.8 2.1e+03 -0.5 0.1 2 13 369 380 369 384 0.81 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZNF577-201 - 485 1.5e-45 151.2 59.9 1 8 1.8e-07 0.00013 22.2 0.3 1 22 158 179 158 179 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF577-201 - 485 1.5e-45 151.2 59.9 2 8 4.2e-07 0.00031 21.0 0.7 3 23 188 208 188 208 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF577-201 - 485 1.5e-45 151.2 59.9 3 8 1.1e-09 7.9e-07 29.2 1.9 1 23 214 236 214 236 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF577-201 - 485 1.5e-45 151.2 59.9 4 8 4.1e-07 0.0003 21.1 5.9 1 23 242 264 242 264 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF577-201 - 485 1.5e-45 151.2 59.9 5 8 1.4e-07 0.0001 22.5 0.2 3 23 272 292 270 292 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF577-201 - 485 1.5e-45 151.2 59.9 6 8 3.2e-09 2.4e-06 27.7 2.6 1 23 298 320 298 320 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF577-201 - 485 1.5e-45 151.2 59.9 7 8 2.5e-08 1.9e-05 24.9 1.1 1 23 326 348 326 348 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF577-201 - 485 1.5e-45 151.2 59.9 8 8 5.4e-06 0.004 17.5 1.0 1 23 354 376 354 376 0.98 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZNF577-201 - 485 8.6e-27 91.5 57.1 1 8 1.2e-05 0.0091 16.8 0.3 1 22 158 179 158 181 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF577-201 - 485 8.6e-27 91.5 57.1 2 8 0.00031 0.24 12.4 0.8 3 23 188 208 186 209 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF577-201 - 485 8.6e-27 91.5 57.1 3 8 3.8e-06 0.0028 18.4 1.8 1 23 214 236 214 237 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF577-201 - 485 8.6e-27 91.5 57.1 4 8 6.5e-06 0.0049 17.6 4.6 1 23 242 264 242 265 0.97 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF577-201 - 485 8.6e-27 91.5 57.1 5 8 7.2e-05 0.054 14.4 0.3 2 23 271 292 270 293 0.86 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF577-201 - 485 8.6e-27 91.5 57.1 6 8 2.5e-05 0.018 15.8 1.3 1 23 298 320 298 321 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF577-201 - 485 8.6e-27 91.5 57.1 7 8 1.9e-06 0.0014 19.3 1.1 1 23 326 348 326 349 0.97 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF577-201 - 485 8.6e-27 91.5 57.1 8 8 0.00035 0.26 12.2 0.7 1 23 354 376 354 377 0.94 C2H2-type zinc finger KRAB PF01352.27 42 ZNF577-201 - 485 1.8e-21 75.5 0.4 1 1 5e-24 3.8e-21 74.5 0.4 1 42 22 63 22 63 0.98 KRAB box zf-C2H2_6 PF13912.6 27 ZNF577-201 - 485 2.5e-11 43.3 56.9 1 8 0.0005 0.37 10.8 0.2 2 13 158 169 158 179 0.80 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF577-201 - 485 2.5e-11 43.3 56.9 2 8 0.01 7.8 6.6 1.2 2 24 186 208 186 211 0.88 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF577-201 - 485 2.5e-11 43.3 56.9 3 8 5.3e-05 0.039 13.9 2.1 2 24 214 236 214 239 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF577-201 - 485 2.5e-11 43.3 56.9 4 8 0.0064 4.8 7.3 4.3 2 24 242 264 242 267 0.90 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF577-201 - 485 2.5e-11 43.3 56.9 5 8 0.0022 1.6 8.8 0.2 2 12 270 280 269 292 0.88 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF577-201 - 485 2.5e-11 43.3 56.9 6 8 0.11 81 3.4 0.8 2 11 298 307 298 308 0.96 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF577-201 - 485 2.5e-11 43.3 56.9 7 8 1.9e-05 0.014 15.3 1.6 2 24 326 348 326 351 0.95 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF577-201 - 485 2.5e-11 43.3 56.9 8 8 0.00049 0.37 10.9 0.8 2 24 354 376 354 379 0.94 C2H2-type zinc finger zf-C2H2_jaz PF12171.8 27 ZNF577-201 - 485 1.8e-09 37.6 34.8 1 8 0.00017 0.13 12.6 0.0 2 23 158 179 157 186 0.85 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF577-201 - 485 1.8e-09 37.6 34.8 2 8 0.019 14 6.1 0.1 4 24 188 208 187 214 0.88 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF577-201 - 485 1.8e-09 37.6 34.8 3 8 0.00022 0.16 12.3 0.4 2 24 214 236 213 236 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF577-201 - 485 1.8e-09 37.6 34.8 4 8 5.1 3.8e+03 -1.7 1.5 2 24 242 264 241 264 0.81 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF577-201 - 485 1.8e-09 37.6 34.8 5 8 0.3 2.3e+02 2.3 0.1 4 21 272 289 270 290 0.89 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF577-201 - 485 1.8e-09 37.6 34.8 6 8 0.66 4.9e+02 1.2 0.2 2 21 298 317 297 318 0.78 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF577-201 - 485 1.8e-09 37.6 34.8 7 8 0.00014 0.1 12.9 0.9 2 24 326 348 325 348 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF577-201 - 485 1.8e-09 37.6 34.8 8 8 0.00032 0.24 11.8 0.2 2 24 354 376 353 377 0.93 Zinc-finger double-stranded RNA-binding # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF577-201.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF577-201.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF577-201.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF577-201.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF577-201.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:09:50 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZNF577-202 - 426 8.6e-61 199.8 50.6 1 9 0.00016 0.12 12.9 0.4 11 25 95 109 89 110 0.87 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF577-202 - 426 8.6e-61 199.8 50.6 2 9 2.6e-05 0.018 15.4 0.2 2 24 114 136 113 136 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF577-202 - 426 8.6e-61 199.8 50.6 3 9 6.8e-12 4.9e-09 36.2 1.2 2 25 142 165 141 166 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF577-202 - 426 8.6e-61 199.8 50.6 4 9 8.3e-12 5.9e-09 35.9 0.7 2 25 170 193 169 194 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF577-202 - 426 8.6e-61 199.8 50.6 5 9 1.9e-10 1.4e-07 31.6 0.2 2 25 198 221 197 222 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF577-202 - 426 8.6e-61 199.8 50.6 6 9 8.7e-10 6.2e-07 29.6 0.8 2 24 226 248 225 249 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF577-202 - 426 8.6e-61 199.8 50.6 7 9 5e-13 3.6e-10 39.8 0.4 1 25 253 277 253 278 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF577-202 - 426 8.6e-61 199.8 50.6 8 9 3.3e-10 2.4e-07 30.9 1.0 2 26 282 306 281 306 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF577-202 - 426 8.6e-61 199.8 50.6 9 9 2.5 1.8e+03 -0.3 0.1 2 13 310 321 310 325 0.81 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZNF577-202 - 426 5.5e-46 152.5 59.9 1 8 1.6e-07 0.00011 22.4 0.3 1 22 99 120 99 120 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF577-202 - 426 5.5e-46 152.5 59.9 2 8 3.7e-07 0.00027 21.2 0.7 3 23 129 149 129 149 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF577-202 - 426 5.5e-46 152.5 59.9 3 8 9.5e-10 6.8e-07 29.4 1.9 1 23 155 177 155 177 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF577-202 - 426 5.5e-46 152.5 59.9 4 8 3.6e-07 0.00026 21.3 5.9 1 23 183 205 183 205 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF577-202 - 426 5.5e-46 152.5 59.9 5 8 1.2e-07 8.8e-05 22.8 0.2 3 23 213 233 211 233 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF577-202 - 426 5.5e-46 152.5 59.9 6 8 2.9e-09 2e-06 27.9 2.6 1 23 239 261 239 261 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF577-202 - 426 5.5e-46 152.5 59.9 7 8 2.2e-08 1.6e-05 25.1 1.1 1 23 267 289 267 289 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF577-202 - 426 5.5e-46 152.5 59.9 8 8 4.8e-06 0.0034 17.7 1.0 1 23 295 317 295 317 0.98 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZNF577-202 - 426 2.8e-27 93.0 57.1 1 8 1.1e-05 0.0078 17.0 0.3 1 22 99 120 99 122 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF577-202 - 426 2.8e-27 93.0 57.1 2 8 0.00028 0.2 12.6 0.8 3 23 129 149 127 150 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF577-202 - 426 2.8e-27 93.0 57.1 3 8 3.3e-06 0.0024 18.6 1.8 1 23 155 177 155 178 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF577-202 - 426 2.8e-27 93.0 57.1 4 8 5.8e-06 0.0041 17.8 4.6 1 23 183 205 183 206 0.97 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF577-202 - 426 2.8e-27 93.0 57.1 5 8 6.4e-05 0.046 14.6 0.3 2 23 212 233 211 234 0.86 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF577-202 - 426 2.8e-27 93.0 57.1 6 8 2.2e-05 0.016 16.0 1.3 1 23 239 261 239 262 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF577-202 - 426 2.8e-27 93.0 57.1 7 8 1.7e-06 0.0012 19.5 1.1 1 23 267 289 267 290 0.97 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF577-202 - 426 2.8e-27 93.0 57.1 8 8 0.00031 0.22 12.4 0.7 1 23 295 317 295 318 0.94 C2H2-type zinc finger KRAB PF01352.27 42 ZNF577-202 - 426 1.5e-21 75.7 0.4 1 1 4.4e-24 3.2e-21 74.7 0.4 1 42 22 63 22 63 0.98 KRAB box zf-C2H2_6 PF13912.6 27 ZNF577-202 - 426 7.9e-12 44.9 56.9 1 8 0.00045 0.32 11.0 0.2 2 13 99 110 99 120 0.80 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF577-202 - 426 7.9e-12 44.9 56.9 2 8 0.0093 6.7 6.8 1.2 2 24 127 149 127 152 0.88 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF577-202 - 426 7.9e-12 44.9 56.9 3 8 4.7e-05 0.034 14.2 2.1 2 24 155 177 155 180 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF577-202 - 426 7.9e-12 44.9 56.9 4 8 0.0057 4.1 7.5 4.3 2 24 183 205 183 208 0.90 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF577-202 - 426 7.9e-12 44.9 56.9 5 8 0.0019 1.4 9.0 0.2 2 12 211 221 210 233 0.88 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF577-202 - 426 7.9e-12 44.9 56.9 6 8 0.098 71 3.6 0.8 2 11 239 248 239 249 0.96 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF577-202 - 426 7.9e-12 44.9 56.9 7 8 1.7e-05 0.012 15.5 1.6 2 24 267 289 267 292 0.95 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF577-202 - 426 7.9e-12 44.9 56.9 8 8 0.00044 0.31 11.1 0.8 2 24 295 317 295 320 0.94 C2H2-type zinc finger zf-C2H2_jaz PF12171.8 27 ZNF577-202 - 426 6.3e-10 39.1 34.9 1 8 0.00015 0.11 12.8 0.0 2 23 99 120 98 127 0.85 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF577-202 - 426 6.3e-10 39.1 34.9 2 8 0.017 12 6.3 0.1 4 24 129 149 128 155 0.88 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF577-202 - 426 6.3e-10 39.1 34.9 3 8 0.00019 0.14 12.5 0.4 2 24 155 177 154 177 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF577-202 - 426 6.3e-10 39.1 34.9 4 8 4.6 3.3e+03 -1.4 1.5 2 24 183 205 182 205 0.81 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF577-202 - 426 6.3e-10 39.1 34.9 5 8 0.27 1.9e+02 2.5 0.1 4 21 213 230 211 231 0.89 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF577-202 - 426 6.3e-10 39.1 34.9 6 8 0.59 4.2e+02 1.4 0.2 2 21 239 258 238 259 0.78 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF577-202 - 426 6.3e-10 39.1 34.9 7 8 0.00012 0.088 13.1 0.9 2 24 267 289 266 289 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF577-202 - 426 6.3e-10 39.1 34.9 8 8 0.00028 0.2 12.0 0.2 2 24 295 317 294 318 0.93 Zinc-finger double-stranded RNA-binding # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF577-202.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF577-202.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF577-202.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF577-202.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF577-202.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:09:51 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF577-203.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF577-203.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF577-203.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF577-203.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF577-203.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:09:51 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF577-204.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF577-204.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF577-204.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF577-204.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF577-204.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:09:51 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF577-205.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF577-205.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF577-205.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF577-205.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF577-205.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:09:52 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF577-206.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF577-206.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF577-206.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF577-206.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF577-206.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:09:52 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF577-207.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF577-207.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF577-207.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF577-207.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF577-207.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:09:52 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF577-208.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF577-208.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF577-208.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF577-208.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF577-208.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:09:53 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF577-209.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF577-209.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF577-209.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF577-209.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF577-209.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:09:53 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- KRAB PF01352.27 42 ZNF577-210 - 100 2.1e-22 78.5 0.4 1 1 1.5e-26 2.7e-22 78.1 0.4 1 42 22 63 22 63 0.98 KRAB box # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF577-210.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF577-210.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF577-210.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF577-210.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF577-210.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:09:53 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF577-211.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF577-211.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF577-211.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF577-211.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF577-211.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:09:54 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF577-212.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF577-212.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF577-212.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF577-212.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF577-212.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:09:54 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF577-213.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF577-213.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF577-213.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF577-213.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF577-213.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:09:54 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZNF577-214 - 426 8.6e-61 199.8 50.6 1 9 0.00016 0.12 12.9 0.4 11 25 95 109 89 110 0.87 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF577-214 - 426 8.6e-61 199.8 50.6 2 9 2.6e-05 0.018 15.4 0.2 2 24 114 136 113 136 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF577-214 - 426 8.6e-61 199.8 50.6 3 9 6.8e-12 4.9e-09 36.2 1.2 2 25 142 165 141 166 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF577-214 - 426 8.6e-61 199.8 50.6 4 9 8.3e-12 5.9e-09 35.9 0.7 2 25 170 193 169 194 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF577-214 - 426 8.6e-61 199.8 50.6 5 9 1.9e-10 1.4e-07 31.6 0.2 2 25 198 221 197 222 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF577-214 - 426 8.6e-61 199.8 50.6 6 9 8.7e-10 6.2e-07 29.6 0.8 2 24 226 248 225 249 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF577-214 - 426 8.6e-61 199.8 50.6 7 9 5e-13 3.6e-10 39.8 0.4 1 25 253 277 253 278 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF577-214 - 426 8.6e-61 199.8 50.6 8 9 3.3e-10 2.4e-07 30.9 1.0 2 26 282 306 281 306 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF577-214 - 426 8.6e-61 199.8 50.6 9 9 2.5 1.8e+03 -0.3 0.1 2 13 310 321 310 325 0.81 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZNF577-214 - 426 5.5e-46 152.5 59.9 1 8 1.6e-07 0.00011 22.4 0.3 1 22 99 120 99 120 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF577-214 - 426 5.5e-46 152.5 59.9 2 8 3.7e-07 0.00027 21.2 0.7 3 23 129 149 129 149 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF577-214 - 426 5.5e-46 152.5 59.9 3 8 9.5e-10 6.8e-07 29.4 1.9 1 23 155 177 155 177 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF577-214 - 426 5.5e-46 152.5 59.9 4 8 3.6e-07 0.00026 21.3 5.9 1 23 183 205 183 205 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF577-214 - 426 5.5e-46 152.5 59.9 5 8 1.2e-07 8.8e-05 22.8 0.2 3 23 213 233 211 233 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF577-214 - 426 5.5e-46 152.5 59.9 6 8 2.9e-09 2e-06 27.9 2.6 1 23 239 261 239 261 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF577-214 - 426 5.5e-46 152.5 59.9 7 8 2.2e-08 1.6e-05 25.1 1.1 1 23 267 289 267 289 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF577-214 - 426 5.5e-46 152.5 59.9 8 8 4.8e-06 0.0034 17.7 1.0 1 23 295 317 295 317 0.98 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZNF577-214 - 426 2.8e-27 93.0 57.1 1 8 1.1e-05 0.0078 17.0 0.3 1 22 99 120 99 122 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF577-214 - 426 2.8e-27 93.0 57.1 2 8 0.00028 0.2 12.6 0.8 3 23 129 149 127 150 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF577-214 - 426 2.8e-27 93.0 57.1 3 8 3.3e-06 0.0024 18.6 1.8 1 23 155 177 155 178 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF577-214 - 426 2.8e-27 93.0 57.1 4 8 5.8e-06 0.0041 17.8 4.6 1 23 183 205 183 206 0.97 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF577-214 - 426 2.8e-27 93.0 57.1 5 8 6.4e-05 0.046 14.6 0.3 2 23 212 233 211 234 0.86 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF577-214 - 426 2.8e-27 93.0 57.1 6 8 2.2e-05 0.016 16.0 1.3 1 23 239 261 239 262 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF577-214 - 426 2.8e-27 93.0 57.1 7 8 1.7e-06 0.0012 19.5 1.1 1 23 267 289 267 290 0.97 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF577-214 - 426 2.8e-27 93.0 57.1 8 8 0.00031 0.22 12.4 0.7 1 23 295 317 295 318 0.94 C2H2-type zinc finger KRAB PF01352.27 42 ZNF577-214 - 426 1.5e-21 75.7 0.4 1 1 4.4e-24 3.2e-21 74.7 0.4 1 42 22 63 22 63 0.98 KRAB box zf-C2H2_6 PF13912.6 27 ZNF577-214 - 426 7.9e-12 44.9 56.9 1 8 0.00045 0.32 11.0 0.2 2 13 99 110 99 120 0.80 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF577-214 - 426 7.9e-12 44.9 56.9 2 8 0.0093 6.7 6.8 1.2 2 24 127 149 127 152 0.88 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF577-214 - 426 7.9e-12 44.9 56.9 3 8 4.7e-05 0.034 14.2 2.1 2 24 155 177 155 180 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF577-214 - 426 7.9e-12 44.9 56.9 4 8 0.0057 4.1 7.5 4.3 2 24 183 205 183 208 0.90 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF577-214 - 426 7.9e-12 44.9 56.9 5 8 0.0019 1.4 9.0 0.2 2 12 211 221 210 233 0.88 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF577-214 - 426 7.9e-12 44.9 56.9 6 8 0.098 71 3.6 0.8 2 11 239 248 239 249 0.96 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF577-214 - 426 7.9e-12 44.9 56.9 7 8 1.7e-05 0.012 15.5 1.6 2 24 267 289 267 292 0.95 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF577-214 - 426 7.9e-12 44.9 56.9 8 8 0.00044 0.31 11.1 0.8 2 24 295 317 295 320 0.94 C2H2-type zinc finger zf-C2H2_jaz PF12171.8 27 ZNF577-214 - 426 6.3e-10 39.1 34.9 1 8 0.00015 0.11 12.8 0.0 2 23 99 120 98 127 0.85 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF577-214 - 426 6.3e-10 39.1 34.9 2 8 0.017 12 6.3 0.1 4 24 129 149 128 155 0.88 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF577-214 - 426 6.3e-10 39.1 34.9 3 8 0.00019 0.14 12.5 0.4 2 24 155 177 154 177 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF577-214 - 426 6.3e-10 39.1 34.9 4 8 4.6 3.3e+03 -1.4 1.5 2 24 183 205 182 205 0.81 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF577-214 - 426 6.3e-10 39.1 34.9 5 8 0.27 1.9e+02 2.5 0.1 4 21 213 230 211 231 0.89 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF577-214 - 426 6.3e-10 39.1 34.9 6 8 0.59 4.2e+02 1.4 0.2 2 21 239 258 238 259 0.78 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF577-214 - 426 6.3e-10 39.1 34.9 7 8 0.00012 0.088 13.1 0.9 2 24 267 289 266 289 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF577-214 - 426 6.3e-10 39.1 34.9 8 8 0.00028 0.2 12.0 0.2 2 24 295 317 294 318 0.93 Zinc-finger double-stranded RNA-binding # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF577-214.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF577-214.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF577-214.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF577-214.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF577-214.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:09:55 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF577-215.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF577-215.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF577-215.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF577-215.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF577-215.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:09:55 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF577-216.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF577-216.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF577-216.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF577-216.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF577-216.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:09:55 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF577-217.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF577-217.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF577-217.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF577-217.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF577-217.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:09:56 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- KRAB PF01352.27 42 ZNF577-218 - 111 3.4e-22 77.8 0.4 1 2 1.9e-26 3.4e-22 77.8 0.4 1 42 22 63 22 63 0.98 KRAB box KRAB PF01352.27 42 ZNF577-218 - 111 3.4e-22 77.8 0.4 2 2 0.074 1.3e+03 -0.9 0.1 23 33 100 110 99 111 0.87 KRAB box # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF577-218.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF577-218.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF577-218.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF577-218.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF577-218.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:09:56 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-C2H2 PF00096.26 23 ZNF579-201 - 562 2.1e-35 119.2 54.4 1 9 6.5e-06 0.0073 16.7 0.8 2 23 45 66 44 66 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF579-201 - 562 2.1e-35 119.2 54.4 2 9 7.6e-08 8.5e-05 22.8 1.6 1 23 72 94 72 94 0.95 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF579-201 - 562 2.1e-35 119.2 54.4 3 9 2.8e-05 0.031 14.7 0.1 2 23 101 123 100 123 0.93 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF579-201 - 562 2.1e-35 119.2 54.4 4 9 0.012 14 6.4 0.1 3 19 232 248 231 248 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF579-201 - 562 2.1e-35 119.2 54.4 5 9 5.8e-06 0.0065 16.9 0.7 1 23 270 292 270 292 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF579-201 - 562 2.1e-35 119.2 54.4 6 9 1.8e-07 0.0002 21.6 0.2 1 23 298 320 298 320 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF579-201 - 562 2.1e-35 119.2 54.4 7 9 1.6e-06 0.0017 18.7 0.8 3 23 386 406 384 406 0.95 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF579-201 - 562 2.1e-35 119.2 54.4 8 9 2.6e-06 0.0029 18.0 0.2 1 23 412 434 412 434 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF579-201 - 562 2.1e-35 119.2 54.4 9 9 1.2e-05 0.014 15.9 5.1 1 21 441 461 441 463 0.94 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZNF579-201 - 562 8.7e-25 85.3 53.2 1 9 8.6e-05 0.096 13.6 0.8 2 23 45 66 44 67 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF579-201 - 562 8.7e-25 85.3 53.2 2 9 3e-06 0.0034 18.1 0.9 1 23 72 94 72 95 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF579-201 - 562 8.7e-25 85.3 53.2 3 9 4.8e-05 0.053 14.4 0.1 2 24 101 123 100 123 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF579-201 - 562 8.7e-25 85.3 53.2 4 9 0.02 22 6.2 0.1 3 19 232 248 230 248 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF579-201 - 562 8.7e-25 85.3 53.2 5 9 6.8e-05 0.076 13.9 1.3 1 23 270 292 270 293 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF579-201 - 562 8.7e-25 85.3 53.2 6 9 0.00024 0.27 12.2 0.2 1 23 298 320 298 321 0.90 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF579-201 - 562 8.7e-25 85.3 53.2 7 9 5.2e-05 0.058 14.3 0.8 1 19 384 402 384 407 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF579-201 - 562 8.7e-25 85.3 53.2 8 9 0.00018 0.2 12.6 0.2 1 23 412 434 412 435 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF579-201 - 562 8.7e-25 85.3 53.2 9 9 0.00021 0.23 12.4 4.4 1 21 441 461 441 463 0.91 C2H2-type zinc finger zf-H2C2_2 PF13465.6 26 ZNF579-201 - 562 7.6e-20 70.4 53.2 1 11 0.22 2.4e+02 2.4 0.2 14 24 43 53 40 54 0.83 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF579-201 - 562 7.6e-20 70.4 53.2 2 11 1.3e-08 1.5e-05 25.2 1.4 2 25 59 82 58 83 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF579-201 - 562 7.6e-20 70.4 53.2 3 11 2.1e-05 0.024 15.1 0.7 1 24 86 109 86 110 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF579-201 - 562 7.6e-20 70.4 53.2 4 11 1 1.1e+03 0.3 0.1 2 9 115 123 114 127 0.78 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF579-201 - 562 7.6e-20 70.4 53.2 5 11 0.0004 0.45 11.1 0.2 12 25 267 280 263 281 0.85 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF579-201 - 562 7.6e-20 70.4 53.2 6 11 3.6e-06 0.0041 17.5 0.1 1 24 284 307 284 308 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF579-201 - 562 7.6e-20 70.4 53.2 7 11 0.55 6.1e+02 1.1 0.2 2 9 313 320 312 324 0.88 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF579-201 - 562 7.6e-20 70.4 53.2 8 11 0.041 46 4.7 0.1 17 25 386 394 380 395 0.86 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF579-201 - 562 7.6e-20 70.4 53.2 9 11 0.0011 1.2 9.6 0.6 1 26 398 423 396 423 0.84 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF579-201 - 562 7.6e-20 70.4 53.2 10 11 2.9e-05 0.033 14.6 0.2 1 25 426 451 426 452 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF579-201 - 562 7.6e-20 70.4 53.2 11 11 0.74 8.3e+02 0.7 0.2 2 10 456 464 455 467 0.84 Zinc-finger double domain zf-C2H2_jaz PF12171.8 27 ZNF579-201 - 562 3.6e-12 46.2 0.2 1 8 3.7 4.1e+03 -1.8 0.0 4 12 46 54 44 66 0.76 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF579-201 - 562 3.6e-12 46.2 0.2 2 8 0.00043 0.48 10.8 0.0 2 24 72 94 71 95 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF579-201 - 562 3.6e-12 46.2 0.2 3 8 0.0012 1.4 9.3 0.0 3 21 101 119 99 121 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF579-201 - 562 3.6e-12 46.2 0.2 4 8 8.3 9.2e+03 -2.9 0.1 7 20 235 248 232 248 0.82 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF579-201 - 562 3.6e-12 46.2 0.2 5 8 4.8 5.4e+03 -2.1 0.0 2 21 298 317 297 318 0.74 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF579-201 - 562 3.6e-12 46.2 0.2 6 8 0.00082 0.92 9.9 0.0 2 20 384 402 383 402 0.95 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF579-201 - 562 3.6e-12 46.2 0.2 7 8 0.13 1.4e+02 2.9 0.1 2 20 412 430 411 430 0.81 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF579-201 - 562 3.6e-12 46.2 0.2 8 8 0.061 68 3.9 0.0 4 22 443 461 440 461 0.89 Zinc-finger double-stranded RNA-binding zf-met PF12874.7 25 ZNF579-201 - 562 1e-11 44.8 9.7 1 7 1.2 1.3e+03 -0.0 0.0 3 19 46 62 45 66 0.88 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF579-201 - 562 1e-11 44.8 9.7 2 7 0.00011 0.13 12.7 0.0 3 23 74 94 72 94 0.96 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF579-201 - 562 1e-11 44.8 9.7 3 7 0.0062 7 7.2 0.0 2 20 101 119 100 120 0.93 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF579-201 - 562 1e-11 44.8 9.7 4 7 0.012 14 6.3 0.1 2 19 271 288 270 289 0.93 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF579-201 - 562 1e-11 44.8 9.7 5 7 0.00041 0.46 10.9 0.1 1 19 384 402 384 406 0.96 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF579-201 - 562 1e-11 44.8 9.7 6 7 0.033 37 4.9 0.1 1 21 412 432 412 434 0.92 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF579-201 - 562 1e-11 44.8 9.7 7 7 0.94 1.1e+03 0.3 0.0 3 20 443 460 441 461 0.90 Zinc-finger of C2H2 type # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF579-201.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF579-201.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF579-201.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF579-201.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF579-201.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:09:57 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-C2H2 PF00096.26 23 ZNF580-201 - 172 3.7e-15 55.4 12.1 1 3 4e-05 0.032 14.7 0.2 1 23 92 114 92 114 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF580-201 - 172 3.7e-15 55.4 12.1 2 3 3.6e-09 3e-06 27.4 1.9 1 23 120 142 120 142 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF580-201 - 172 3.7e-15 55.4 12.1 3 3 1.2e-06 0.00096 19.5 0.2 1 23 150 172 150 172 0.98 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZNF580-201 - 172 5.1e-12 45.5 15.4 1 3 4.3e-06 0.0035 18.0 0.4 1 23 92 114 92 115 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF580-201 - 172 5.1e-12 45.5 15.4 2 3 2.6e-06 0.0021 18.8 1.8 1 23 120 142 120 143 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF580-201 - 172 5.1e-12 45.5 15.4 3 3 5e-06 0.004 17.9 0.3 1 23 150 172 150 172 0.95 C2H2-type zinc finger zf-C2H2_jaz PF12171.8 27 ZNF580-201 - 172 4e-11 42.9 0.0 1 3 5.4e-05 0.044 14.1 0.0 2 24 92 114 91 115 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF580-201 - 172 4e-11 42.9 0.0 2 3 0.0003 0.24 11.7 0.0 2 24 120 142 119 143 0.91 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF580-201 - 172 4e-11 42.9 0.0 3 3 6.5e-05 0.053 13.8 0.0 2 22 150 170 149 170 0.93 Zinc-finger double-stranded RNA-binding zf-H2C2_2 PF13465.6 26 ZNF580-201 - 172 1.9e-09 37.5 18.6 1 4 0.0011 0.89 10.1 0.2 11 26 87 103 85 103 0.83 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF580-201 - 172 1.9e-09 37.5 18.6 2 4 8.7e-07 0.00071 19.9 0.3 2 26 107 131 106 131 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF580-201 - 172 1.9e-09 37.5 18.6 3 4 2.5e-06 0.0021 18.4 2.5 1 24 134 159 134 160 0.87 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF580-201 - 172 1.9e-09 37.5 18.6 4 4 4.7 3.8e+03 -1.4 0.2 2 9 165 172 164 172 0.86 Zinc-finger double domain zf-met PF12874.7 25 ZNF580-201 - 172 6e-07 29.6 3.2 1 3 0.0065 5.3 7.6 0.1 1 20 92 111 92 114 0.90 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF580-201 - 172 6e-07 29.6 3.2 2 3 0.00069 0.57 10.7 0.3 1 19 120 138 120 143 0.92 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF580-201 - 172 6e-07 29.6 3.2 3 3 0.0006 0.49 10.9 0.0 2 20 151 169 150 170 0.93 Zinc-finger of C2H2 type # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF580-201.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF580-201.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF580-201.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF580-201.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF580-201.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:09:57 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-C2H2 PF00096.26 23 ZNF580-202 - 172 3.7e-15 55.4 12.1 1 3 4e-05 0.032 14.7 0.2 1 23 92 114 92 114 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF580-202 - 172 3.7e-15 55.4 12.1 2 3 3.6e-09 3e-06 27.4 1.9 1 23 120 142 120 142 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF580-202 - 172 3.7e-15 55.4 12.1 3 3 1.2e-06 0.00096 19.5 0.2 1 23 150 172 150 172 0.98 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZNF580-202 - 172 5.1e-12 45.5 15.4 1 3 4.3e-06 0.0035 18.0 0.4 1 23 92 114 92 115 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF580-202 - 172 5.1e-12 45.5 15.4 2 3 2.6e-06 0.0021 18.8 1.8 1 23 120 142 120 143 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF580-202 - 172 5.1e-12 45.5 15.4 3 3 5e-06 0.004 17.9 0.3 1 23 150 172 150 172 0.95 C2H2-type zinc finger zf-C2H2_jaz PF12171.8 27 ZNF580-202 - 172 4e-11 42.9 0.0 1 3 5.4e-05 0.044 14.1 0.0 2 24 92 114 91 115 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF580-202 - 172 4e-11 42.9 0.0 2 3 0.0003 0.24 11.7 0.0 2 24 120 142 119 143 0.91 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF580-202 - 172 4e-11 42.9 0.0 3 3 6.5e-05 0.053 13.8 0.0 2 22 150 170 149 170 0.93 Zinc-finger double-stranded RNA-binding zf-H2C2_2 PF13465.6 26 ZNF580-202 - 172 1.9e-09 37.5 18.6 1 4 0.0011 0.89 10.1 0.2 11 26 87 103 85 103 0.83 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF580-202 - 172 1.9e-09 37.5 18.6 2 4 8.7e-07 0.00071 19.9 0.3 2 26 107 131 106 131 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF580-202 - 172 1.9e-09 37.5 18.6 3 4 2.5e-06 0.0021 18.4 2.5 1 24 134 159 134 160 0.87 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF580-202 - 172 1.9e-09 37.5 18.6 4 4 4.7 3.8e+03 -1.4 0.2 2 9 165 172 164 172 0.86 Zinc-finger double domain zf-met PF12874.7 25 ZNF580-202 - 172 6e-07 29.6 3.2 1 3 0.0065 5.3 7.6 0.1 1 20 92 111 92 114 0.90 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF580-202 - 172 6e-07 29.6 3.2 2 3 0.00069 0.57 10.7 0.3 1 19 120 138 120 143 0.92 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF580-202 - 172 6e-07 29.6 3.2 3 3 0.0006 0.49 10.9 0.0 2 20 151 169 150 170 0.93 Zinc-finger of C2H2 type # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF580-202.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF580-202.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF580-202.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF580-202.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF580-202.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:09:57 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-C2H2 PF00096.26 23 ZNF580-203 - 172 3.7e-15 55.4 12.1 1 3 4e-05 0.032 14.7 0.2 1 23 92 114 92 114 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF580-203 - 172 3.7e-15 55.4 12.1 2 3 3.6e-09 3e-06 27.4 1.9 1 23 120 142 120 142 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF580-203 - 172 3.7e-15 55.4 12.1 3 3 1.2e-06 0.00096 19.5 0.2 1 23 150 172 150 172 0.98 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZNF580-203 - 172 5.1e-12 45.5 15.4 1 3 4.3e-06 0.0035 18.0 0.4 1 23 92 114 92 115 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF580-203 - 172 5.1e-12 45.5 15.4 2 3 2.6e-06 0.0021 18.8 1.8 1 23 120 142 120 143 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF580-203 - 172 5.1e-12 45.5 15.4 3 3 5e-06 0.004 17.9 0.3 1 23 150 172 150 172 0.95 C2H2-type zinc finger zf-C2H2_jaz PF12171.8 27 ZNF580-203 - 172 4e-11 42.9 0.0 1 3 5.4e-05 0.044 14.1 0.0 2 24 92 114 91 115 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF580-203 - 172 4e-11 42.9 0.0 2 3 0.0003 0.24 11.7 0.0 2 24 120 142 119 143 0.91 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF580-203 - 172 4e-11 42.9 0.0 3 3 6.5e-05 0.053 13.8 0.0 2 22 150 170 149 170 0.93 Zinc-finger double-stranded RNA-binding zf-H2C2_2 PF13465.6 26 ZNF580-203 - 172 1.9e-09 37.5 18.6 1 4 0.0011 0.89 10.1 0.2 11 26 87 103 85 103 0.83 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF580-203 - 172 1.9e-09 37.5 18.6 2 4 8.7e-07 0.00071 19.9 0.3 2 26 107 131 106 131 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF580-203 - 172 1.9e-09 37.5 18.6 3 4 2.5e-06 0.0021 18.4 2.5 1 24 134 159 134 160 0.87 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF580-203 - 172 1.9e-09 37.5 18.6 4 4 4.7 3.8e+03 -1.4 0.2 2 9 165 172 164 172 0.86 Zinc-finger double domain zf-met PF12874.7 25 ZNF580-203 - 172 6e-07 29.6 3.2 1 3 0.0065 5.3 7.6 0.1 1 20 92 111 92 114 0.90 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF580-203 - 172 6e-07 29.6 3.2 2 3 0.00069 0.57 10.7 0.3 1 19 120 138 120 143 0.92 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF580-203 - 172 6e-07 29.6 3.2 3 3 0.0006 0.49 10.9 0.0 2 20 151 169 150 170 0.93 Zinc-finger of C2H2 type # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF580-203.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF580-203.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF580-203.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF580-203.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF580-203.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:09:58 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF580-205.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF580-205.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF580-205.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF580-205.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF580-205.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:09:58 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF580-206.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF580-206.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF580-206.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF580-206.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF580-206.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:09:58 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZNF582-201 - 517 5.4e-78 254.2 77.8 1 11 0.0049 4 8.0 0.2 7 25 163 181 153 182 0.88 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF582-201 - 517 5.4e-78 254.2 77.8 2 11 3.5e-07 0.00029 21.1 0.7 5 26 189 210 186 210 0.83 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF582-201 - 517 5.4e-78 254.2 77.8 3 11 2.4e-09 2e-06 28.0 0.4 2 26 214 238 213 238 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF582-201 - 517 5.4e-78 254.2 77.8 4 11 2.3e-11 1.9e-08 34.4 0.8 2 25 242 265 241 266 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF582-201 - 517 5.4e-78 254.2 77.8 5 11 8.8e-12 7.1e-09 35.7 0.5 3 25 271 293 269 294 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF582-201 - 517 5.4e-78 254.2 77.8 6 11 2.4e-10 1.9e-07 31.2 4.4 1 26 297 322 297 322 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF582-201 - 517 5.4e-78 254.2 77.8 7 11 1.4e-08 1.1e-05 25.6 0.2 2 25 326 349 325 350 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF582-201 - 517 5.4e-78 254.2 77.8 8 11 4.6e-12 3.8e-09 36.6 0.5 2 24 354 376 353 377 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF582-201 - 517 5.4e-78 254.2 77.8 9 11 6e-12 4.9e-09 36.2 0.7 2 26 382 406 381 406 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF582-201 - 517 5.4e-78 254.2 77.8 10 11 2.9e-11 2.3e-08 34.1 3.5 1 26 409 434 409 434 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF582-201 - 517 5.4e-78 254.2 77.8 11 11 0.00049 0.4 11.2 2.1 5 23 441 459 438 462 0.85 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZNF582-201 - 517 5.2e-55 181.0 66.0 1 10 0.78 6.3e+02 1.2 0.0 5 20 175 190 174 191 0.91 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF582-201 - 517 5.2e-55 181.0 66.0 2 10 4e-06 0.0032 17.8 0.4 1 23 199 221 199 221 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF582-201 - 517 5.2e-55 181.0 66.0 3 10 6.5e-08 5.3e-05 23.5 0.3 1 23 227 249 227 249 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF582-201 - 517 5.2e-55 181.0 66.0 4 10 1.5e-09 1.2e-06 28.6 0.6 1 23 255 277 255 277 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF582-201 - 517 5.2e-55 181.0 66.0 5 10 3.9e-09 3.2e-06 27.3 1.9 1 23 283 305 283 305 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF582-201 - 517 5.2e-55 181.0 66.0 6 10 5.8e-08 4.7e-05 23.6 1.7 1 23 311 333 311 333 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF582-201 - 517 5.2e-55 181.0 66.0 7 10 2.6e-08 2.1e-05 24.7 0.2 1 23 339 361 339 361 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF582-201 - 517 5.2e-55 181.0 66.0 8 10 7.4e-09 6e-06 26.4 0.5 1 23 367 389 367 389 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF582-201 - 517 5.2e-55 181.0 66.0 9 10 5.4e-09 4.4e-06 26.8 2.1 1 23 395 417 395 417 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF582-201 - 517 5.2e-55 181.0 66.0 10 10 5.1e-07 0.00041 20.6 4.0 1 23 423 445 423 445 0.96 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZNF582-201 - 517 2.4e-30 102.6 65.0 1 10 0.89 7.3e+02 1.5 0.0 5 19 175 189 174 191 0.91 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF582-201 - 517 2.4e-30 102.6 65.0 2 10 6.1e-05 0.05 14.5 0.4 1 23 199 221 199 222 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF582-201 - 517 2.4e-30 102.6 65.0 3 10 2.9e-05 0.024 15.5 0.3 1 23 227 249 227 250 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF582-201 - 517 2.4e-30 102.6 65.0 4 10 9.6e-06 0.0078 17.0 0.7 1 23 255 277 255 278 0.97 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF582-201 - 517 2.4e-30 102.6 65.0 5 10 1.5e-05 0.012 16.4 1.4 1 23 283 305 283 306 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF582-201 - 517 2.4e-30 102.6 65.0 6 10 4.3e-05 0.035 14.9 1.5 1 23 311 333 311 334 0.90 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF582-201 - 517 2.4e-30 102.6 65.0 7 10 2.4e-05 0.019 15.7 0.2 1 23 339 361 339 362 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF582-201 - 517 2.4e-30 102.6 65.0 8 10 7.1e-06 0.0058 17.4 0.7 1 23 367 389 367 390 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF582-201 - 517 2.4e-30 102.6 65.0 9 10 1.4e-05 0.011 16.5 1.7 1 23 395 417 395 418 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF582-201 - 517 2.4e-30 102.6 65.0 10 10 0.00024 0.2 12.6 4.0 1 23 423 445 423 446 0.93 C2H2-type zinc finger KRAB PF01352.27 42 ZNF582-201 - 517 8.1e-23 79.8 0.2 1 1 2.4e-25 2e-22 78.6 0.2 4 42 8 46 7 46 0.99 KRAB box zf-C2H2_6 PF13912.6 27 ZNF582-201 - 517 1.5e-19 69.5 55.3 1 9 3.7e-05 0.03 14.3 0.7 2 20 199 217 199 221 0.90 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF582-201 - 517 1.5e-19 69.5 55.3 2 9 5.9e-06 0.0048 16.9 0.7 2 24 227 249 227 252 0.86 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF582-201 - 517 1.5e-19 69.5 55.3 3 9 0.00035 0.28 11.2 0.8 2 24 255 277 255 280 0.95 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF582-201 - 517 1.5e-19 69.5 55.3 4 9 0.00065 0.53 10.4 0.3 2 14 283 295 283 304 0.88 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF582-201 - 517 1.5e-19 69.5 55.3 5 9 0.00088 0.72 9.9 0.4 2 12 311 321 311 329 0.92 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF582-201 - 517 1.5e-19 69.5 55.3 6 9 5e-05 0.041 13.9 0.3 2 22 339 359 338 363 0.84 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF582-201 - 517 1.5e-19 69.5 55.3 7 9 0.00062 0.51 10.4 0.5 2 12 367 377 367 378 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF582-201 - 517 1.5e-19 69.5 55.3 8 9 0.0044 3.5 7.7 0.2 2 13 395 406 395 416 0.88 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF582-201 - 517 1.5e-19 69.5 55.3 9 9 0.0028 2.3 8.3 2.9 2 12 423 433 423 441 0.92 C2H2-type zinc finger zf-C2H2_jaz PF12171.8 27 ZNF582-201 - 517 4.3e-17 61.9 41.7 1 9 0.023 19 5.7 0.3 2 21 199 218 198 219 0.78 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF582-201 - 517 4.3e-17 61.9 41.7 2 9 8.4e-05 0.069 13.5 0.1 2 22 227 247 226 247 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF582-201 - 517 4.3e-17 61.9 41.7 3 9 2.8e-05 0.023 15.0 0.5 2 24 255 277 254 277 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF582-201 - 517 4.3e-17 61.9 41.7 4 9 0.0017 1.4 9.3 0.4 4 22 285 303 282 303 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF582-201 - 517 4.3e-17 61.9 41.7 5 9 7.1e-05 0.058 13.7 0.3 2 21 311 330 310 331 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF582-201 - 517 4.3e-17 61.9 41.7 6 9 0.014 11 6.4 0.1 2 21 339 358 338 359 0.87 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF582-201 - 517 4.3e-17 61.9 41.7 7 9 0.00025 0.2 12.0 0.1 2 22 367 387 366 387 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF582-201 - 517 4.3e-17 61.9 41.7 8 9 0.0052 4.3 7.8 0.1 4 22 397 415 394 415 0.91 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF582-201 - 517 4.3e-17 61.9 41.7 9 9 0.13 1e+02 3.3 1.6 2 13 423 434 422 442 0.83 Zinc-finger double-stranded RNA-binding Zn-ribbon_8 PF09723.10 40 ZNF582-201 - 517 2.2e-09 37.3 58.0 1 9 4.8 4e+03 -1.9 0.0 10 20 123 133 121 138 0.78 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF582-201 - 517 2.2e-09 37.3 58.0 2 9 0.00051 0.41 10.8 6.1 6 34 199 234 198 237 0.82 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF582-201 - 517 2.2e-09 37.3 58.0 3 9 0.00028 0.22 11.6 6.2 6 38 227 266 226 267 0.91 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF582-201 - 517 2.2e-09 37.3 58.0 4 9 0.00013 0.1 12.7 5.6 6 38 255 294 254 296 0.90 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF582-201 - 517 2.2e-09 37.3 58.0 5 9 4.6e-05 0.038 14.1 4.1 6 35 283 319 282 323 0.85 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF582-201 - 517 2.2e-09 37.3 58.0 6 9 0.0023 1.8 8.7 0.4 6 19 311 324 310 333 0.80 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF582-201 - 517 2.2e-09 37.3 58.0 7 9 6.9e-06 0.0056 16.8 3.1 6 36 339 376 338 381 0.92 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF582-201 - 517 2.2e-09 37.3 58.0 8 9 7.1e-06 0.0058 16.7 2.0 6 39 367 407 366 408 0.92 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF582-201 - 517 2.2e-09 37.3 58.0 9 9 0.15 1.2e+02 2.9 6.2 6 17 423 440 422 463 0.72 Zinc ribbon domain zf-met PF12874.7 25 ZNF582-201 - 517 1.2e-08 35.0 59.7 1 9 0.2 1.6e+02 2.9 0.4 1 21 199 219 199 221 0.90 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF582-201 - 517 1.2e-08 35.0 59.7 2 9 0.00037 0.3 11.5 0.5 1 21 227 247 227 250 0.93 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF582-201 - 517 1.2e-08 35.0 59.7 3 9 0.0012 0.94 10.0 0.7 1 21 255 275 255 278 0.92 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF582-201 - 517 1.2e-08 35.0 59.7 4 9 0.00035 0.29 11.6 1.1 1 22 283 304 283 306 0.93 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF582-201 - 517 1.2e-08 35.0 59.7 5 9 4.7e-05 0.039 14.4 0.7 1 19 311 329 311 331 0.93 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF582-201 - 517 1.2e-08 35.0 59.7 6 9 0.049 40 4.8 0.2 1 21 339 359 339 362 0.90 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF582-201 - 517 1.2e-08 35.0 59.7 7 9 0.0018 1.4 9.4 0.6 1 21 367 387 367 390 0.91 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF582-201 - 517 1.2e-08 35.0 59.7 8 9 0.0011 0.93 10.0 0.6 1 22 395 416 395 418 0.92 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF582-201 - 517 1.2e-08 35.0 59.7 9 9 1.7 1.4e+03 -0.1 1.2 1 12 423 434 423 442 0.82 Zinc-finger of C2H2 type # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF582-201.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF582-201.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF582-201.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF582-201.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF582-201.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:09:59 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZNF582-202 - 548 1.2e-77 253.1 77.8 1 11 0.0053 4.3 7.9 0.2 7 25 194 212 184 213 0.88 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF582-202 - 548 1.2e-77 253.1 77.8 2 11 3.7e-07 0.00031 21.1 0.7 5 26 220 241 217 241 0.83 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF582-202 - 548 1.2e-77 253.1 77.8 3 11 2.6e-09 2.1e-06 27.9 0.4 2 26 245 269 244 269 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF582-202 - 548 1.2e-77 253.1 77.8 4 11 2.4e-11 2e-08 34.3 0.8 2 25 273 296 272 297 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF582-202 - 548 1.2e-77 253.1 77.8 5 11 9.4e-12 7.7e-09 35.6 0.5 3 25 302 324 300 325 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF582-202 - 548 1.2e-77 253.1 77.8 6 11 2.5e-10 2.1e-07 31.1 4.4 1 26 328 353 328 353 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF582-202 - 548 1.2e-77 253.1 77.8 7 11 1.5e-08 1.2e-05 25.5 0.2 2 25 357 380 356 381 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF582-202 - 548 1.2e-77 253.1 77.8 8 11 4.9e-12 4e-09 36.5 0.5 2 24 385 407 384 408 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF582-202 - 548 1.2e-77 253.1 77.8 9 11 6.5e-12 5.3e-09 36.1 0.7 2 26 413 437 412 437 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF582-202 - 548 1.2e-77 253.1 77.8 10 11 3.1e-11 2.5e-08 34.0 3.5 1 26 440 465 440 465 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF582-202 - 548 1.2e-77 253.1 77.8 11 11 0.00052 0.43 11.1 2.1 5 23 472 490 469 493 0.85 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZNF582-202 - 548 1e-54 180.0 66.0 1 10 0.83 6.8e+02 1.1 0.0 5 20 206 221 205 222 0.91 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF582-202 - 548 1e-54 180.0 66.0 2 10 4.3e-06 0.0035 17.7 0.4 1 23 230 252 230 252 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF582-202 - 548 1e-54 180.0 66.0 3 10 6.9e-08 5.7e-05 23.4 0.3 1 23 258 280 258 280 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF582-202 - 548 1e-54 180.0 66.0 4 10 1.6e-09 1.3e-06 28.5 0.6 1 23 286 308 286 308 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF582-202 - 548 1e-54 180.0 66.0 5 10 4.2e-09 3.4e-06 27.2 1.9 1 23 314 336 314 336 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF582-202 - 548 1e-54 180.0 66.0 6 10 6.2e-08 5.1e-05 23.5 1.7 1 23 342 364 342 364 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF582-202 - 548 1e-54 180.0 66.0 7 10 2.8e-08 2.3e-05 24.6 0.2 1 23 370 392 370 392 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF582-202 - 548 1e-54 180.0 66.0 8 10 7.9e-09 6.4e-06 26.3 0.5 1 23 398 420 398 420 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF582-202 - 548 1e-54 180.0 66.0 9 10 5.8e-09 4.7e-06 26.8 2.1 1 23 426 448 426 448 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF582-202 - 548 1e-54 180.0 66.0 10 10 5.4e-07 0.00044 20.5 4.0 1 23 454 476 454 476 0.96 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZNF582-202 - 548 4.9e-30 101.6 65.0 1 10 0.96 7.8e+02 1.4 0.0 5 19 206 220 205 222 0.91 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF582-202 - 548 4.9e-30 101.6 65.0 2 10 6.5e-05 0.053 14.4 0.4 1 23 230 252 230 253 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF582-202 - 548 4.9e-30 101.6 65.0 3 10 3.2e-05 0.026 15.4 0.3 1 23 258 280 258 281 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF582-202 - 548 4.9e-30 101.6 65.0 4 10 1e-05 0.0084 16.9 0.7 1 23 286 308 286 309 0.97 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF582-202 - 548 4.9e-30 101.6 65.0 5 10 1.6e-05 0.013 16.3 1.4 1 23 314 336 314 337 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF582-202 - 548 4.9e-30 101.6 65.0 6 10 4.6e-05 0.037 14.8 1.5 1 23 342 364 342 365 0.90 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF582-202 - 548 4.9e-30 101.6 65.0 7 10 2.6e-05 0.021 15.6 0.2 1 23 370 392 370 393 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF582-202 - 548 4.9e-30 101.6 65.0 8 10 7.7e-06 0.0062 17.3 0.7 1 23 398 420 398 421 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF582-202 - 548 4.9e-30 101.6 65.0 9 10 1.5e-05 0.012 16.4 1.7 1 23 426 448 426 449 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF582-202 - 548 4.9e-30 101.6 65.0 10 10 0.00026 0.21 12.5 4.0 1 23 454 476 454 477 0.93 C2H2-type zinc finger KRAB PF01352.27 42 ZNF582-202 - 548 8.7e-23 79.7 0.2 1 1 2.6e-25 2.1e-22 78.4 0.2 4 42 39 77 38 77 0.99 KRAB box zf-C2H2_6 PF13912.6 27 ZNF582-202 - 548 2.7e-19 68.7 55.3 1 9 4e-05 0.033 14.2 0.7 2 20 230 248 230 252 0.90 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF582-202 - 548 2.7e-19 68.7 55.3 2 9 6.3e-06 0.0052 16.8 0.7 2 24 258 280 258 283 0.86 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF582-202 - 548 2.7e-19 68.7 55.3 3 9 0.00037 0.3 11.1 0.8 2 24 286 308 286 311 0.95 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF582-202 - 548 2.7e-19 68.7 55.3 4 9 0.00069 0.56 10.3 0.3 2 14 314 326 314 335 0.88 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF582-202 - 548 2.7e-19 68.7 55.3 5 9 0.00094 0.77 9.8 0.4 2 12 342 352 342 360 0.92 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF582-202 - 548 2.7e-19 68.7 55.3 6 9 5.3e-05 0.044 13.8 0.3 2 22 370 390 369 394 0.84 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF582-202 - 548 2.7e-19 68.7 55.3 7 9 0.00066 0.54 10.3 0.5 2 12 398 408 398 409 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF582-202 - 548 2.7e-19 68.7 55.3 8 9 0.0046 3.8 7.6 0.2 2 13 426 437 426 447 0.88 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF582-202 - 548 2.7e-19 68.7 55.3 9 9 0.003 2.5 8.2 2.9 2 12 454 464 454 472 0.92 C2H2-type zinc finger zf-C2H2_jaz PF12171.8 27 ZNF582-202 - 548 8.2e-17 61.0 41.7 1 9 0.024 20 5.6 0.3 2 21 230 249 229 250 0.78 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF582-202 - 548 8.2e-17 61.0 41.7 2 9 9e-05 0.074 13.4 0.1 2 22 258 278 257 278 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF582-202 - 548 8.2e-17 61.0 41.7 3 9 3e-05 0.024 14.9 0.5 2 24 286 308 285 308 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF582-202 - 548 8.2e-17 61.0 41.7 4 9 0.0018 1.5 9.2 0.4 4 22 316 334 313 334 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF582-202 - 548 8.2e-17 61.0 41.7 5 9 7.6e-05 0.062 13.6 0.3 2 21 342 361 341 362 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF582-202 - 548 8.2e-17 61.0 41.7 6 9 0.015 12 6.3 0.1 2 21 370 389 369 390 0.87 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF582-202 - 548 8.2e-17 61.0 41.7 7 9 0.00026 0.22 11.9 0.1 2 22 398 418 397 418 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF582-202 - 548 8.2e-17 61.0 41.7 8 9 0.0056 4.6 7.7 0.1 4 22 428 446 425 446 0.91 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF582-202 - 548 8.2e-17 61.0 41.7 9 9 0.14 1.1e+02 3.2 1.6 2 13 454 465 453 473 0.83 Zinc-finger double-stranded RNA-binding Zn-ribbon_8 PF09723.10 40 ZNF582-202 - 548 2.1e-09 37.3 57.2 1 9 5.2 4.2e+03 -2.0 0.0 10 20 154 164 152 169 0.78 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF582-202 - 548 2.1e-09 37.3 57.2 2 9 0.00047 0.39 10.9 5.9 6 34 230 265 229 268 0.82 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF582-202 - 548 2.1e-09 37.3 57.2 3 9 0.00028 0.23 11.6 6.1 6 38 258 297 257 298 0.91 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF582-202 - 548 2.1e-09 37.3 57.2 4 9 0.00013 0.11 12.6 5.6 6 38 286 325 285 327 0.90 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF582-202 - 548 2.1e-09 37.3 57.2 5 9 5.2e-05 0.042 14.0 4.2 6 35 314 350 313 354 0.85 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF582-202 - 548 2.1e-09 37.3 57.2 6 9 0.0025 2 8.6 0.4 6 19 342 355 341 364 0.80 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF582-202 - 548 2.1e-09 37.3 57.2 7 9 5.5e-06 0.0045 17.1 2.7 6 36 370 407 369 410 0.92 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF582-202 - 548 2.1e-09 37.3 57.2 8 9 8.7e-06 0.0071 16.4 2.2 6 39 398 438 397 439 0.92 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF582-202 - 548 2.1e-09 37.3 57.2 9 9 0.12 98 3.2 5.7 6 17 454 468 453 492 0.72 Zinc ribbon domain zf-met PF12874.7 25 ZNF582-202 - 548 2e-08 34.4 59.5 1 9 0.21 1.7e+02 2.8 0.4 1 21 230 250 230 252 0.90 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF582-202 - 548 2e-08 34.4 59.5 2 9 0.0004 0.32 11.4 0.5 1 21 258 278 258 281 0.93 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF582-202 - 548 2e-08 34.4 59.5 3 9 0.0012 1 9.9 0.7 1 21 286 306 286 309 0.92 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF582-202 - 548 2e-08 34.4 59.5 4 9 0.00038 0.31 11.5 1.1 1 22 314 335 314 337 0.93 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF582-202 - 548 2e-08 34.4 59.5 5 9 5.1e-05 0.041 14.3 0.7 1 19 342 360 342 362 0.93 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF582-202 - 548 2e-08 34.4 59.5 6 9 0.053 43 4.7 0.2 1 21 370 390 370 393 0.90 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF582-202 - 548 2e-08 34.4 59.5 7 9 0.0019 1.6 9.3 0.6 1 21 398 418 398 421 0.91 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF582-202 - 548 2e-08 34.4 59.5 8 9 0.0012 1 9.9 0.6 1 22 426 447 426 449 0.92 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF582-202 - 548 2e-08 34.4 59.5 9 9 1.8 1.5e+03 -0.2 1.1 1 12 454 465 454 472 0.83 Zinc-finger of C2H2 type # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF582-202.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF582-202.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF582-202.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF582-202.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF582-202.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:09:59 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF582-203.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF582-203.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF582-203.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF582-203.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF582-203.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:10:00 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- KRAB PF01352.27 42 ZNF582-204 - 114 1.2e-23 82.5 0.2 1 1 1e-27 1.8e-23 81.9 0.2 4 42 8 46 7 46 0.99 KRAB box # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF582-204.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF582-204.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF582-204.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF582-204.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF582-204.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:10:00 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF582-205.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF582-205.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF582-205.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF582-205.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF582-205.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:10:00 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF582-206.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF582-206.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF582-206.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF582-206.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF582-206.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:10:01 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZNF582-207 - 517 5.4e-78 254.2 77.8 1 11 0.0049 4 8.0 0.2 7 25 163 181 153 182 0.88 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF582-207 - 517 5.4e-78 254.2 77.8 2 11 3.5e-07 0.00029 21.1 0.7 5 26 189 210 186 210 0.83 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF582-207 - 517 5.4e-78 254.2 77.8 3 11 2.4e-09 2e-06 28.0 0.4 2 26 214 238 213 238 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF582-207 - 517 5.4e-78 254.2 77.8 4 11 2.3e-11 1.9e-08 34.4 0.8 2 25 242 265 241 266 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF582-207 - 517 5.4e-78 254.2 77.8 5 11 8.8e-12 7.1e-09 35.7 0.5 3 25 271 293 269 294 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF582-207 - 517 5.4e-78 254.2 77.8 6 11 2.4e-10 1.9e-07 31.2 4.4 1 26 297 322 297 322 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF582-207 - 517 5.4e-78 254.2 77.8 7 11 1.4e-08 1.1e-05 25.6 0.2 2 25 326 349 325 350 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF582-207 - 517 5.4e-78 254.2 77.8 8 11 4.6e-12 3.8e-09 36.6 0.5 2 24 354 376 353 377 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF582-207 - 517 5.4e-78 254.2 77.8 9 11 6e-12 4.9e-09 36.2 0.7 2 26 382 406 381 406 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF582-207 - 517 5.4e-78 254.2 77.8 10 11 2.9e-11 2.3e-08 34.1 3.5 1 26 409 434 409 434 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF582-207 - 517 5.4e-78 254.2 77.8 11 11 0.00049 0.4 11.2 2.1 5 23 441 459 438 462 0.85 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZNF582-207 - 517 5.2e-55 181.0 66.0 1 10 0.78 6.3e+02 1.2 0.0 5 20 175 190 174 191 0.91 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF582-207 - 517 5.2e-55 181.0 66.0 2 10 4e-06 0.0032 17.8 0.4 1 23 199 221 199 221 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF582-207 - 517 5.2e-55 181.0 66.0 3 10 6.5e-08 5.3e-05 23.5 0.3 1 23 227 249 227 249 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF582-207 - 517 5.2e-55 181.0 66.0 4 10 1.5e-09 1.2e-06 28.6 0.6 1 23 255 277 255 277 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF582-207 - 517 5.2e-55 181.0 66.0 5 10 3.9e-09 3.2e-06 27.3 1.9 1 23 283 305 283 305 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF582-207 - 517 5.2e-55 181.0 66.0 6 10 5.8e-08 4.7e-05 23.6 1.7 1 23 311 333 311 333 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF582-207 - 517 5.2e-55 181.0 66.0 7 10 2.6e-08 2.1e-05 24.7 0.2 1 23 339 361 339 361 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF582-207 - 517 5.2e-55 181.0 66.0 8 10 7.4e-09 6e-06 26.4 0.5 1 23 367 389 367 389 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF582-207 - 517 5.2e-55 181.0 66.0 9 10 5.4e-09 4.4e-06 26.8 2.1 1 23 395 417 395 417 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF582-207 - 517 5.2e-55 181.0 66.0 10 10 5.1e-07 0.00041 20.6 4.0 1 23 423 445 423 445 0.96 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZNF582-207 - 517 2.4e-30 102.6 65.0 1 10 0.89 7.3e+02 1.5 0.0 5 19 175 189 174 191 0.91 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF582-207 - 517 2.4e-30 102.6 65.0 2 10 6.1e-05 0.05 14.5 0.4 1 23 199 221 199 222 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF582-207 - 517 2.4e-30 102.6 65.0 3 10 2.9e-05 0.024 15.5 0.3 1 23 227 249 227 250 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF582-207 - 517 2.4e-30 102.6 65.0 4 10 9.6e-06 0.0078 17.0 0.7 1 23 255 277 255 278 0.97 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF582-207 - 517 2.4e-30 102.6 65.0 5 10 1.5e-05 0.012 16.4 1.4 1 23 283 305 283 306 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF582-207 - 517 2.4e-30 102.6 65.0 6 10 4.3e-05 0.035 14.9 1.5 1 23 311 333 311 334 0.90 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF582-207 - 517 2.4e-30 102.6 65.0 7 10 2.4e-05 0.019 15.7 0.2 1 23 339 361 339 362 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF582-207 - 517 2.4e-30 102.6 65.0 8 10 7.1e-06 0.0058 17.4 0.7 1 23 367 389 367 390 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF582-207 - 517 2.4e-30 102.6 65.0 9 10 1.4e-05 0.011 16.5 1.7 1 23 395 417 395 418 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF582-207 - 517 2.4e-30 102.6 65.0 10 10 0.00024 0.2 12.6 4.0 1 23 423 445 423 446 0.93 C2H2-type zinc finger KRAB PF01352.27 42 ZNF582-207 - 517 8.1e-23 79.8 0.2 1 1 2.4e-25 2e-22 78.6 0.2 4 42 8 46 7 46 0.99 KRAB box zf-C2H2_6 PF13912.6 27 ZNF582-207 - 517 1.5e-19 69.5 55.3 1 9 3.7e-05 0.03 14.3 0.7 2 20 199 217 199 221 0.90 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF582-207 - 517 1.5e-19 69.5 55.3 2 9 5.9e-06 0.0048 16.9 0.7 2 24 227 249 227 252 0.86 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF582-207 - 517 1.5e-19 69.5 55.3 3 9 0.00035 0.28 11.2 0.8 2 24 255 277 255 280 0.95 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF582-207 - 517 1.5e-19 69.5 55.3 4 9 0.00065 0.53 10.4 0.3 2 14 283 295 283 304 0.88 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF582-207 - 517 1.5e-19 69.5 55.3 5 9 0.00088 0.72 9.9 0.4 2 12 311 321 311 329 0.92 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF582-207 - 517 1.5e-19 69.5 55.3 6 9 5e-05 0.041 13.9 0.3 2 22 339 359 338 363 0.84 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF582-207 - 517 1.5e-19 69.5 55.3 7 9 0.00062 0.51 10.4 0.5 2 12 367 377 367 378 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF582-207 - 517 1.5e-19 69.5 55.3 8 9 0.0044 3.5 7.7 0.2 2 13 395 406 395 416 0.88 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF582-207 - 517 1.5e-19 69.5 55.3 9 9 0.0028 2.3 8.3 2.9 2 12 423 433 423 441 0.92 C2H2-type zinc finger zf-C2H2_jaz PF12171.8 27 ZNF582-207 - 517 4.3e-17 61.9 41.7 1 9 0.023 19 5.7 0.3 2 21 199 218 198 219 0.78 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF582-207 - 517 4.3e-17 61.9 41.7 2 9 8.4e-05 0.069 13.5 0.1 2 22 227 247 226 247 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF582-207 - 517 4.3e-17 61.9 41.7 3 9 2.8e-05 0.023 15.0 0.5 2 24 255 277 254 277 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF582-207 - 517 4.3e-17 61.9 41.7 4 9 0.0017 1.4 9.3 0.4 4 22 285 303 282 303 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF582-207 - 517 4.3e-17 61.9 41.7 5 9 7.1e-05 0.058 13.7 0.3 2 21 311 330 310 331 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF582-207 - 517 4.3e-17 61.9 41.7 6 9 0.014 11 6.4 0.1 2 21 339 358 338 359 0.87 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF582-207 - 517 4.3e-17 61.9 41.7 7 9 0.00025 0.2 12.0 0.1 2 22 367 387 366 387 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF582-207 - 517 4.3e-17 61.9 41.7 8 9 0.0052 4.3 7.8 0.1 4 22 397 415 394 415 0.91 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF582-207 - 517 4.3e-17 61.9 41.7 9 9 0.13 1e+02 3.3 1.6 2 13 423 434 422 442 0.83 Zinc-finger double-stranded RNA-binding Zn-ribbon_8 PF09723.10 40 ZNF582-207 - 517 2.2e-09 37.3 58.0 1 9 4.8 4e+03 -1.9 0.0 10 20 123 133 121 138 0.78 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF582-207 - 517 2.2e-09 37.3 58.0 2 9 0.00051 0.41 10.8 6.1 6 34 199 234 198 237 0.82 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF582-207 - 517 2.2e-09 37.3 58.0 3 9 0.00028 0.22 11.6 6.2 6 38 227 266 226 267 0.91 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF582-207 - 517 2.2e-09 37.3 58.0 4 9 0.00013 0.1 12.7 5.6 6 38 255 294 254 296 0.90 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF582-207 - 517 2.2e-09 37.3 58.0 5 9 4.6e-05 0.038 14.1 4.1 6 35 283 319 282 323 0.85 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF582-207 - 517 2.2e-09 37.3 58.0 6 9 0.0023 1.8 8.7 0.4 6 19 311 324 310 333 0.80 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF582-207 - 517 2.2e-09 37.3 58.0 7 9 6.9e-06 0.0056 16.8 3.1 6 36 339 376 338 381 0.92 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF582-207 - 517 2.2e-09 37.3 58.0 8 9 7.1e-06 0.0058 16.7 2.0 6 39 367 407 366 408 0.92 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF582-207 - 517 2.2e-09 37.3 58.0 9 9 0.15 1.2e+02 2.9 6.2 6 17 423 440 422 463 0.72 Zinc ribbon domain zf-met PF12874.7 25 ZNF582-207 - 517 1.2e-08 35.0 59.7 1 9 0.2 1.6e+02 2.9 0.4 1 21 199 219 199 221 0.90 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF582-207 - 517 1.2e-08 35.0 59.7 2 9 0.00037 0.3 11.5 0.5 1 21 227 247 227 250 0.93 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF582-207 - 517 1.2e-08 35.0 59.7 3 9 0.0012 0.94 10.0 0.7 1 21 255 275 255 278 0.92 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF582-207 - 517 1.2e-08 35.0 59.7 4 9 0.00035 0.29 11.6 1.1 1 22 283 304 283 306 0.93 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF582-207 - 517 1.2e-08 35.0 59.7 5 9 4.7e-05 0.039 14.4 0.7 1 19 311 329 311 331 0.93 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF582-207 - 517 1.2e-08 35.0 59.7 6 9 0.049 40 4.8 0.2 1 21 339 359 339 362 0.90 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF582-207 - 517 1.2e-08 35.0 59.7 7 9 0.0018 1.4 9.4 0.6 1 21 367 387 367 390 0.91 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF582-207 - 517 1.2e-08 35.0 59.7 8 9 0.0011 0.93 10.0 0.6 1 22 395 416 395 418 0.92 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF582-207 - 517 1.2e-08 35.0 59.7 9 9 1.7 1.4e+03 -0.1 1.2 1 12 423 434 423 442 0.82 Zinc-finger of C2H2 type # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF582-207.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF582-207.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF582-207.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF582-207.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF582-207.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:10:01 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZNF583-201 - 569 3.4e-105 340.2 80.0 1 13 0.0076 7.2 7.2 0.4 10 25 203 222 199 223 0.73 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF583-201 - 569 3.4e-105 340.2 80.0 2 13 1.5e-10 1.5e-07 31.6 0.2 2 25 227 250 226 251 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF583-201 - 569 3.4e-105 340.2 80.0 3 13 2.4e-12 2.3e-09 37.3 0.8 1 25 254 278 254 279 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF583-201 - 569 3.4e-105 340.2 80.0 4 13 6.1e-12 5.7e-09 36.0 1.9 1 25 282 306 282 307 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF583-201 - 569 3.4e-105 340.2 80.0 5 13 3.5e-12 3.3e-09 36.8 0.4 1 26 310 335 310 335 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF583-201 - 569 3.4e-105 340.2 80.0 6 13 6.1e-11 5.8e-08 32.8 0.3 2 26 339 363 339 363 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF583-201 - 569 3.4e-105 340.2 80.0 7 13 4.6e-11 4.4e-08 33.2 0.3 4 25 369 390 366 391 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF583-201 - 569 3.4e-105 340.2 80.0 8 13 2.4e-12 2.3e-09 37.3 1.3 1 25 394 418 394 419 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF583-201 - 569 3.4e-105 340.2 80.0 9 13 1.9e-12 1.8e-09 37.6 0.2 2 26 423 447 422 447 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF583-201 - 569 3.4e-105 340.2 80.0 10 13 5.7e-11 5.4e-08 32.9 0.9 2 25 451 474 450 475 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF583-201 - 569 3.4e-105 340.2 80.0 11 13 8.1e-12 7.7e-09 35.6 0.1 2 25 479 502 478 503 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF583-201 - 569 3.4e-105 340.2 80.0 12 13 6.7e-11 6.4e-08 32.7 0.6 2 25 507 530 506 531 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF583-201 - 569 3.4e-105 340.2 80.0 13 13 0.37 3.5e+02 1.9 1.3 1 14 534 547 534 549 0.82 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZNF583-201 - 569 8.6e-66 214.9 77.0 1 12 1.7e-08 1.6e-05 25.1 0.6 2 23 213 234 212 234 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF583-201 - 569 8.6e-66 214.9 77.0 2 12 5.2e-08 4.9e-05 23.5 0.1 1 23 240 262 240 262 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF583-201 - 569 8.6e-66 214.9 77.0 3 12 5.9e-08 5.5e-05 23.4 1.2 1 23 268 290 268 290 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF583-201 - 569 8.6e-66 214.9 77.0 4 12 7.9e-08 7.4e-05 23.0 1.8 1 23 296 318 296 318 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF583-201 - 569 8.6e-66 214.9 77.0 5 12 3.1e-05 0.029 14.8 0.1 1 23 324 346 324 346 0.94 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF583-201 - 569 8.6e-66 214.9 77.0 6 12 1.1e-08 1e-05 25.7 0.5 1 23 352 374 352 374 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF583-201 - 569 8.6e-66 214.9 77.0 7 12 2.3e-07 0.00021 21.5 1.5 1 23 380 402 380 402 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF583-201 - 569 8.6e-66 214.9 77.0 8 12 5.6e-06 0.0052 17.2 0.4 1 23 408 430 408 430 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF583-201 - 569 8.6e-66 214.9 77.0 9 12 1.9e-07 0.00018 21.8 0.2 1 23 436 458 436 458 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF583-201 - 569 8.6e-66 214.9 77.0 10 12 2.5e-07 0.00024 21.4 0.5 1 23 464 486 464 486 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF583-201 - 569 8.6e-66 214.9 77.0 11 12 2.3e-08 2.2e-05 24.7 0.2 1 23 492 514 492 514 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF583-201 - 569 8.6e-66 214.9 77.0 12 12 2.9e-07 0.00028 21.2 4.1 1 23 520 542 520 542 0.98 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZNF583-201 - 569 2.9e-34 114.8 78.3 1 12 0.00065 0.61 11.1 0.6 2 23 213 234 212 235 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF583-201 - 569 2.9e-34 114.8 78.3 2 12 3.4e-05 0.032 15.1 0.2 1 23 240 262 240 263 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF583-201 - 569 2.9e-34 114.8 78.3 3 12 9.3e-05 0.088 13.7 1.3 1 23 268 290 268 291 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF583-201 - 569 2.9e-34 114.8 78.3 4 12 0.00011 0.11 13.4 1.8 1 23 296 318 296 319 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF583-201 - 569 2.9e-34 114.8 78.3 5 12 0.00024 0.23 12.4 0.2 1 23 324 346 324 347 0.88 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF583-201 - 569 2.9e-34 114.8 78.3 6 12 0.00021 0.2 12.6 0.5 1 23 352 374 352 375 0.89 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF583-201 - 569 2.9e-34 114.8 78.3 7 12 7.9e-05 0.074 13.9 1.7 1 23 380 402 380 403 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF583-201 - 569 2.9e-34 114.8 78.3 8 12 0.00013 0.12 13.3 0.5 1 23 408 430 408 431 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF583-201 - 569 2.9e-34 114.8 78.3 9 12 4.5e-06 0.0043 17.8 0.3 1 23 436 458 436 459 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF583-201 - 569 2.9e-34 114.8 78.3 10 12 3.3e-05 0.031 15.1 0.4 1 23 464 486 464 487 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF583-201 - 569 2.9e-34 114.8 78.3 11 12 8.8e-05 0.083 13.8 0.3 1 23 492 514 492 515 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF583-201 - 569 2.9e-34 114.8 78.3 12 12 0.00016 0.15 13.0 3.1 1 23 520 542 520 543 0.94 C2H2-type zinc finger KRAB PF01352.27 42 ZNF583-201 - 569 3.3e-26 90.7 0.6 1 2 3.8e-28 3.6e-25 87.3 0.3 1 42 5 46 5 46 0.99 KRAB box KRAB PF01352.27 42 ZNF583-201 - 569 3.3e-26 90.7 0.6 2 2 0.46 4.3e+02 0.7 0.0 10 29 176 195 169 199 0.85 KRAB box zf-C2H2_jaz PF12171.8 27 ZNF583-201 - 569 3.3e-16 59.1 54.6 1 12 0.047 44 4.5 0.4 3 22 213 232 212 232 0.90 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF583-201 - 569 3.3e-16 59.1 54.6 2 12 0.00062 0.58 10.5 0.1 2 22 240 260 239 260 0.91 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF583-201 - 569 3.3e-16 59.1 54.6 3 12 0.0055 5.2 7.5 0.8 2 21 268 287 267 288 0.89 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF583-201 - 569 3.3e-16 59.1 54.6 4 12 0.026 24 5.3 1.2 4 22 298 316 295 316 0.88 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF583-201 - 569 3.3e-16 59.1 54.6 5 12 0.00029 0.27 11.6 0.0 2 22 324 344 323 344 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF583-201 - 569 3.3e-16 59.1 54.6 6 12 0.32 3e+02 1.8 0.1 2 20 352 370 351 372 0.78 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF583-201 - 569 3.3e-16 59.1 54.6 7 12 0.035 33 4.9 0.5 2 12 380 390 379 400 0.83 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF583-201 - 569 3.3e-16 59.1 54.6 8 12 0.00068 0.65 10.4 0.3 2 22 408 428 407 428 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF583-201 - 569 3.3e-16 59.1 54.6 9 12 8.6e-07 0.00081 19.6 0.3 2 24 436 458 435 458 0.95 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF583-201 - 569 3.3e-16 59.1 54.6 10 12 0.0016 1.5 9.2 0.1 2 21 464 483 463 484 0.84 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF583-201 - 569 3.3e-16 59.1 54.6 11 12 0.16 1.5e+02 2.8 0.0 2 20 492 510 491 512 0.78 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF583-201 - 569 3.3e-16 59.1 54.6 12 12 0.091 86 3.6 0.2 2 11 520 529 519 539 0.89 Zinc-finger double-stranded RNA-binding Zn-ribbon_8 PF09723.10 40 ZNF583-201 - 569 4.3e-09 36.3 56.0 1 11 0.0003 0.28 11.3 2.0 7 35 213 248 211 252 0.89 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF583-201 - 569 4.3e-09 36.3 56.0 2 11 0.0014 1.4 9.1 4.0 6 34 240 275 239 281 0.82 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF583-201 - 569 4.3e-09 36.3 56.0 3 11 0.0021 2 8.6 5.8 6 35 268 304 267 309 0.89 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF583-201 - 569 4.3e-09 36.3 56.0 4 11 0.012 11 6.2 0.5 6 20 296 310 295 318 0.83 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF583-201 - 569 4.3e-09 36.3 56.0 5 11 0.00015 0.14 12.3 0.5 6 35 324 360 323 365 0.91 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF583-201 - 569 4.3e-09 36.3 56.0 6 11 0.0033 3.1 8.0 4.5 6 35 380 416 379 421 0.88 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF583-201 - 569 4.3e-09 36.3 56.0 7 11 0.0059 5.6 7.2 3.4 6 34 408 443 407 446 0.90 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF583-201 - 569 4.3e-09 36.3 56.0 8 11 0.00053 0.5 10.5 3.3 6 35 436 472 435 476 0.89 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF583-201 - 569 4.3e-09 36.3 56.0 9 11 0.00055 0.51 10.5 2.8 6 34 464 499 462 504 0.92 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF583-201 - 569 4.3e-09 36.3 56.0 10 11 0.00031 0.29 11.3 2.8 6 37 492 530 491 533 0.89 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF583-201 - 569 4.3e-09 36.3 56.0 11 11 0.026 25 5.1 0.7 6 18 520 532 519 539 0.82 Zinc ribbon domain zf-C2H2_6 PF13912.6 27 ZNF583-201 - 569 4.1e-08 33.0 88.4 1 12 0.15 1.4e+02 2.6 0.5 3 18 213 228 213 235 0.76 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF583-201 - 569 4.1e-08 33.0 88.4 2 12 0.0015 1.4 9.0 0.4 2 24 240 262 240 265 0.90 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF583-201 - 569 4.1e-08 33.0 88.4 3 12 0.053 50 4.1 4.1 2 12 268 278 268 289 0.86 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF583-201 - 569 4.1e-08 33.0 88.4 4 12 0.0011 1 9.4 1.9 2 22 296 316 296 320 0.83 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF583-201 - 569 4.1e-08 33.0 88.4 5 12 0.02 19 5.4 0.2 2 12 324 334 324 344 0.92 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF583-201 - 569 4.1e-08 33.0 88.4 6 12 0.004 3.8 7.6 0.7 2 12 352 362 352 363 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF583-201 - 569 4.1e-08 33.0 88.4 7 12 0.0024 2.3 8.3 2.1 2 20 380 398 380 403 0.79 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF583-201 - 569 4.1e-08 33.0 88.4 8 12 0.0032 3 7.9 0.3 2 12 408 418 408 430 0.90 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF583-201 - 569 4.1e-08 33.0 88.4 9 12 0.0015 1.4 9.0 0.8 2 24 436 458 436 461 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF583-201 - 569 4.1e-08 33.0 88.4 10 12 0.014 13 5.9 0.1 2 12 464 474 464 484 0.90 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF583-201 - 569 4.1e-08 33.0 88.4 11 12 0.00011 0.11 12.6 0.5 2 21 492 511 492 516 0.83 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF583-201 - 569 4.1e-08 33.0 88.4 12 12 2.8 2.6e+03 -1.4 7.3 2 12 520 530 520 541 0.82 C2H2-type zinc finger # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF583-201.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF583-201.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF583-201.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF583-201.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF583-201.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:10:02 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZNF583-202 - 569 3.4e-105 340.2 80.0 1 13 0.0076 7.2 7.2 0.4 10 25 203 222 199 223 0.73 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF583-202 - 569 3.4e-105 340.2 80.0 2 13 1.5e-10 1.5e-07 31.6 0.2 2 25 227 250 226 251 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF583-202 - 569 3.4e-105 340.2 80.0 3 13 2.4e-12 2.3e-09 37.3 0.8 1 25 254 278 254 279 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF583-202 - 569 3.4e-105 340.2 80.0 4 13 6.1e-12 5.7e-09 36.0 1.9 1 25 282 306 282 307 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF583-202 - 569 3.4e-105 340.2 80.0 5 13 3.5e-12 3.3e-09 36.8 0.4 1 26 310 335 310 335 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF583-202 - 569 3.4e-105 340.2 80.0 6 13 6.1e-11 5.8e-08 32.8 0.3 2 26 339 363 339 363 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF583-202 - 569 3.4e-105 340.2 80.0 7 13 4.6e-11 4.4e-08 33.2 0.3 4 25 369 390 366 391 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF583-202 - 569 3.4e-105 340.2 80.0 8 13 2.4e-12 2.3e-09 37.3 1.3 1 25 394 418 394 419 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF583-202 - 569 3.4e-105 340.2 80.0 9 13 1.9e-12 1.8e-09 37.6 0.2 2 26 423 447 422 447 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF583-202 - 569 3.4e-105 340.2 80.0 10 13 5.7e-11 5.4e-08 32.9 0.9 2 25 451 474 450 475 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF583-202 - 569 3.4e-105 340.2 80.0 11 13 8.1e-12 7.7e-09 35.6 0.1 2 25 479 502 478 503 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF583-202 - 569 3.4e-105 340.2 80.0 12 13 6.7e-11 6.4e-08 32.7 0.6 2 25 507 530 506 531 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF583-202 - 569 3.4e-105 340.2 80.0 13 13 0.37 3.5e+02 1.9 1.3 1 14 534 547 534 549 0.82 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZNF583-202 - 569 8.6e-66 214.9 77.0 1 12 1.7e-08 1.6e-05 25.1 0.6 2 23 213 234 212 234 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF583-202 - 569 8.6e-66 214.9 77.0 2 12 5.2e-08 4.9e-05 23.5 0.1 1 23 240 262 240 262 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF583-202 - 569 8.6e-66 214.9 77.0 3 12 5.9e-08 5.5e-05 23.4 1.2 1 23 268 290 268 290 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF583-202 - 569 8.6e-66 214.9 77.0 4 12 7.9e-08 7.4e-05 23.0 1.8 1 23 296 318 296 318 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF583-202 - 569 8.6e-66 214.9 77.0 5 12 3.1e-05 0.029 14.8 0.1 1 23 324 346 324 346 0.94 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF583-202 - 569 8.6e-66 214.9 77.0 6 12 1.1e-08 1e-05 25.7 0.5 1 23 352 374 352 374 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF583-202 - 569 8.6e-66 214.9 77.0 7 12 2.3e-07 0.00021 21.5 1.5 1 23 380 402 380 402 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF583-202 - 569 8.6e-66 214.9 77.0 8 12 5.6e-06 0.0052 17.2 0.4 1 23 408 430 408 430 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF583-202 - 569 8.6e-66 214.9 77.0 9 12 1.9e-07 0.00018 21.8 0.2 1 23 436 458 436 458 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF583-202 - 569 8.6e-66 214.9 77.0 10 12 2.5e-07 0.00024 21.4 0.5 1 23 464 486 464 486 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF583-202 - 569 8.6e-66 214.9 77.0 11 12 2.3e-08 2.2e-05 24.7 0.2 1 23 492 514 492 514 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF583-202 - 569 8.6e-66 214.9 77.0 12 12 2.9e-07 0.00028 21.2 4.1 1 23 520 542 520 542 0.98 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZNF583-202 - 569 2.9e-34 114.8 78.3 1 12 0.00065 0.61 11.1 0.6 2 23 213 234 212 235 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF583-202 - 569 2.9e-34 114.8 78.3 2 12 3.4e-05 0.032 15.1 0.2 1 23 240 262 240 263 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF583-202 - 569 2.9e-34 114.8 78.3 3 12 9.3e-05 0.088 13.7 1.3 1 23 268 290 268 291 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF583-202 - 569 2.9e-34 114.8 78.3 4 12 0.00011 0.11 13.4 1.8 1 23 296 318 296 319 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF583-202 - 569 2.9e-34 114.8 78.3 5 12 0.00024 0.23 12.4 0.2 1 23 324 346 324 347 0.88 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF583-202 - 569 2.9e-34 114.8 78.3 6 12 0.00021 0.2 12.6 0.5 1 23 352 374 352 375 0.89 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF583-202 - 569 2.9e-34 114.8 78.3 7 12 7.9e-05 0.074 13.9 1.7 1 23 380 402 380 403 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF583-202 - 569 2.9e-34 114.8 78.3 8 12 0.00013 0.12 13.3 0.5 1 23 408 430 408 431 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF583-202 - 569 2.9e-34 114.8 78.3 9 12 4.5e-06 0.0043 17.8 0.3 1 23 436 458 436 459 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF583-202 - 569 2.9e-34 114.8 78.3 10 12 3.3e-05 0.031 15.1 0.4 1 23 464 486 464 487 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF583-202 - 569 2.9e-34 114.8 78.3 11 12 8.8e-05 0.083 13.8 0.3 1 23 492 514 492 515 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF583-202 - 569 2.9e-34 114.8 78.3 12 12 0.00016 0.15 13.0 3.1 1 23 520 542 520 543 0.94 C2H2-type zinc finger KRAB PF01352.27 42 ZNF583-202 - 569 3.3e-26 90.7 0.6 1 2 3.8e-28 3.6e-25 87.3 0.3 1 42 5 46 5 46 0.99 KRAB box KRAB PF01352.27 42 ZNF583-202 - 569 3.3e-26 90.7 0.6 2 2 0.46 4.3e+02 0.7 0.0 10 29 176 195 169 199 0.85 KRAB box zf-C2H2_jaz PF12171.8 27 ZNF583-202 - 569 3.3e-16 59.1 54.6 1 12 0.047 44 4.5 0.4 3 22 213 232 212 232 0.90 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF583-202 - 569 3.3e-16 59.1 54.6 2 12 0.00062 0.58 10.5 0.1 2 22 240 260 239 260 0.91 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF583-202 - 569 3.3e-16 59.1 54.6 3 12 0.0055 5.2 7.5 0.8 2 21 268 287 267 288 0.89 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF583-202 - 569 3.3e-16 59.1 54.6 4 12 0.026 24 5.3 1.2 4 22 298 316 295 316 0.88 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF583-202 - 569 3.3e-16 59.1 54.6 5 12 0.00029 0.27 11.6 0.0 2 22 324 344 323 344 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF583-202 - 569 3.3e-16 59.1 54.6 6 12 0.32 3e+02 1.8 0.1 2 20 352 370 351 372 0.78 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF583-202 - 569 3.3e-16 59.1 54.6 7 12 0.035 33 4.9 0.5 2 12 380 390 379 400 0.83 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF583-202 - 569 3.3e-16 59.1 54.6 8 12 0.00068 0.65 10.4 0.3 2 22 408 428 407 428 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF583-202 - 569 3.3e-16 59.1 54.6 9 12 8.6e-07 0.00081 19.6 0.3 2 24 436 458 435 458 0.95 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF583-202 - 569 3.3e-16 59.1 54.6 10 12 0.0016 1.5 9.2 0.1 2 21 464 483 463 484 0.84 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF583-202 - 569 3.3e-16 59.1 54.6 11 12 0.16 1.5e+02 2.8 0.0 2 20 492 510 491 512 0.78 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF583-202 - 569 3.3e-16 59.1 54.6 12 12 0.091 86 3.6 0.2 2 11 520 529 519 539 0.89 Zinc-finger double-stranded RNA-binding Zn-ribbon_8 PF09723.10 40 ZNF583-202 - 569 4.3e-09 36.3 56.0 1 11 0.0003 0.28 11.3 2.0 7 35 213 248 211 252 0.89 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF583-202 - 569 4.3e-09 36.3 56.0 2 11 0.0014 1.4 9.1 4.0 6 34 240 275 239 281 0.82 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF583-202 - 569 4.3e-09 36.3 56.0 3 11 0.0021 2 8.6 5.8 6 35 268 304 267 309 0.89 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF583-202 - 569 4.3e-09 36.3 56.0 4 11 0.012 11 6.2 0.5 6 20 296 310 295 318 0.83 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF583-202 - 569 4.3e-09 36.3 56.0 5 11 0.00015 0.14 12.3 0.5 6 35 324 360 323 365 0.91 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF583-202 - 569 4.3e-09 36.3 56.0 6 11 0.0033 3.1 8.0 4.5 6 35 380 416 379 421 0.88 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF583-202 - 569 4.3e-09 36.3 56.0 7 11 0.0059 5.6 7.2 3.4 6 34 408 443 407 446 0.90 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF583-202 - 569 4.3e-09 36.3 56.0 8 11 0.00053 0.5 10.5 3.3 6 35 436 472 435 476 0.89 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF583-202 - 569 4.3e-09 36.3 56.0 9 11 0.00055 0.51 10.5 2.8 6 34 464 499 462 504 0.92 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF583-202 - 569 4.3e-09 36.3 56.0 10 11 0.00031 0.29 11.3 2.8 6 37 492 530 491 533 0.89 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF583-202 - 569 4.3e-09 36.3 56.0 11 11 0.026 25 5.1 0.7 6 18 520 532 519 539 0.82 Zinc ribbon domain zf-C2H2_6 PF13912.6 27 ZNF583-202 - 569 4.1e-08 33.0 88.4 1 12 0.15 1.4e+02 2.6 0.5 3 18 213 228 213 235 0.76 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF583-202 - 569 4.1e-08 33.0 88.4 2 12 0.0015 1.4 9.0 0.4 2 24 240 262 240 265 0.90 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF583-202 - 569 4.1e-08 33.0 88.4 3 12 0.053 50 4.1 4.1 2 12 268 278 268 289 0.86 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF583-202 - 569 4.1e-08 33.0 88.4 4 12 0.0011 1 9.4 1.9 2 22 296 316 296 320 0.83 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF583-202 - 569 4.1e-08 33.0 88.4 5 12 0.02 19 5.4 0.2 2 12 324 334 324 344 0.92 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF583-202 - 569 4.1e-08 33.0 88.4 6 12 0.004 3.8 7.6 0.7 2 12 352 362 352 363 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF583-202 - 569 4.1e-08 33.0 88.4 7 12 0.0024 2.3 8.3 2.1 2 20 380 398 380 403 0.79 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF583-202 - 569 4.1e-08 33.0 88.4 8 12 0.0032 3 7.9 0.3 2 12 408 418 408 430 0.90 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF583-202 - 569 4.1e-08 33.0 88.4 9 12 0.0015 1.4 9.0 0.8 2 24 436 458 436 461 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF583-202 - 569 4.1e-08 33.0 88.4 10 12 0.014 13 5.9 0.1 2 12 464 474 464 484 0.90 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF583-202 - 569 4.1e-08 33.0 88.4 11 12 0.00011 0.11 12.6 0.5 2 21 492 511 492 516 0.83 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF583-202 - 569 4.1e-08 33.0 88.4 12 12 2.8 2.6e+03 -1.4 7.3 2 12 520 530 520 541 0.82 C2H2-type zinc finger # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF583-202.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF583-202.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF583-202.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF583-202.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF583-202.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:10:02 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF583-203.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF583-203.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF583-203.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF583-203.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF583-203.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:10:03 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- KRAB PF01352.27 42 ZNF583-204 - 79 8.9e-27 92.5 0.3 1 1 6.4e-31 1.1e-26 92.1 0.3 1 42 5 46 5 46 0.99 KRAB box # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF583-204.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF583-204.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF583-204.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF583-204.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF583-204.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:10:03 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF583-205.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF583-205.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF583-205.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF583-205.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF583-205.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:10:03 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- KRAB PF01352.27 42 ZNF583-206 - 51 2.7e-27 94.1 0.3 1 1 1.7e-31 3.1e-27 94.0 0.3 1 42 5 46 5 46 0.99 KRAB box # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF583-206.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF583-206.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF583-206.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF583-206.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF583-206.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:10:04 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZNF583-207 - 198 5.4e-57 187.8 37.4 1 7 0.0045 2.1 8.9 0.4 10 25 4 23 1 24 0.72 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF583-207 - 198 5.4e-57 187.8 37.4 2 7 8.1e-11 3.7e-08 33.4 0.2 2 25 28 51 27 52 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF583-207 - 198 5.4e-57 187.8 37.4 3 7 1.2e-12 5.7e-10 39.2 0.8 1 25 55 79 55 80 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF583-207 - 198 5.4e-57 187.8 37.4 4 7 3.2e-12 1.5e-09 37.9 1.9 1 25 83 107 83 108 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF583-207 - 198 5.4e-57 187.8 37.4 5 7 1.8e-12 8.3e-10 38.6 0.4 1 26 111 136 111 136 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF583-207 - 198 5.4e-57 187.8 37.4 6 7 3.2e-11 1.5e-08 34.7 0.3 2 26 140 164 140 164 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF583-207 - 198 5.4e-57 187.8 37.4 7 7 2.3e-06 0.001 19.4 0.1 4 18 170 184 167 185 0.88 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZNF583-207 - 198 1.1e-37 126.4 32.3 1 6 9e-09 4.1e-06 26.9 0.6 2 23 14 35 13 35 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF583-207 - 198 1.1e-37 126.4 32.3 2 6 2.8e-08 1.3e-05 25.4 0.1 1 23 41 63 41 63 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF583-207 - 198 1.1e-37 126.4 32.3 3 6 3.1e-08 1.4e-05 25.2 1.2 1 23 69 91 69 91 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF583-207 - 198 1.1e-37 126.4 32.3 4 6 4.2e-08 1.9e-05 24.8 1.8 1 23 97 119 97 119 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF583-207 - 198 1.1e-37 126.4 32.3 5 6 1.7e-05 0.0076 16.7 0.1 1 23 125 147 125 147 0.95 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF583-207 - 198 1.1e-37 126.4 32.3 6 6 5.7e-09 2.6e-06 27.6 0.5 1 23 153 175 153 175 0.99 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZNF583-207 - 198 3.2e-19 68.0 33.6 1 6 0.00034 0.16 12.9 0.6 2 23 14 35 13 36 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF583-207 - 198 3.2e-19 68.0 33.6 2 6 1.8e-05 0.0081 16.9 0.2 1 23 41 63 41 64 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF583-207 - 198 3.2e-19 68.0 33.6 3 6 4.9e-05 0.022 15.5 1.3 1 23 69 91 69 92 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF583-207 - 198 3.2e-19 68.0 33.6 4 6 6e-05 0.028 15.3 1.8 1 23 97 119 97 120 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF583-207 - 198 3.2e-19 68.0 33.6 5 6 0.00012 0.057 14.3 0.2 1 23 125 147 125 148 0.88 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF583-207 - 198 3.2e-19 68.0 33.6 6 6 0.00011 0.052 14.4 0.5 1 23 153 175 153 176 0.89 C2H2-type zinc finger zf-C2H2_jaz PF12171.8 27 ZNF583-207 - 198 7.4e-10 38.9 23.7 1 6 0.026 12 6.3 0.4 3 22 14 33 13 33 0.90 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF583-207 - 198 7.4e-10 38.9 23.7 2 6 0.00034 0.16 12.3 0.1 2 22 41 61 40 61 0.91 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF583-207 - 198 7.4e-10 38.9 23.7 3 6 0.0031 1.4 9.3 0.8 2 22 69 89 68 89 0.89 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF583-207 - 198 7.4e-10 38.9 23.7 4 6 0.014 6.6 7.1 1.2 4 22 99 117 96 117 0.88 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF583-207 - 198 7.4e-10 38.9 23.7 5 6 0.00016 0.073 13.4 0.0 2 22 125 145 124 145 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF583-207 - 198 7.4e-10 38.9 23.7 6 6 0.18 84 3.6 0.1 2 20 153 171 152 173 0.78 Zinc-finger double-stranded RNA-binding zf-LYAR PF08790.11 28 ZNF583-207 - 198 4e-07 29.8 18.7 1 6 0.0088 4 7.4 0.2 3 14 15 27 13 33 0.77 LYAR-type C2HC zinc finger zf-LYAR PF08790.11 28 ZNF583-207 - 198 4e-07 29.8 18.7 2 6 0.00014 0.062 13.2 0.1 1 19 41 60 41 61 0.86 LYAR-type C2HC zinc finger zf-LYAR PF08790.11 28 ZNF583-207 - 198 4e-07 29.8 18.7 3 6 0.15 71 3.4 0.1 2 18 70 87 69 89 0.74 LYAR-type C2HC zinc finger zf-LYAR PF08790.11 28 ZNF583-207 - 198 4e-07 29.8 18.7 4 6 0.17 79 3.3 0.4 1 18 97 115 97 117 0.81 LYAR-type C2HC zinc finger zf-LYAR PF08790.11 28 ZNF583-207 - 198 4e-07 29.8 18.7 5 6 0.00076 0.35 10.8 0.1 1 15 125 139 125 144 0.83 LYAR-type C2HC zinc finger zf-LYAR PF08790.11 28 ZNF583-207 - 198 4e-07 29.8 18.7 6 6 0.76 3.5e+02 1.2 0.0 2 15 154 167 153 169 0.78 LYAR-type C2HC zinc finger Zn-ribbon_8 PF09723.10 40 ZNF583-207 - 198 1e-06 28.8 25.4 1 6 0.00018 0.082 13.0 2.4 7 35 14 49 12 54 0.89 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF583-207 - 198 1e-06 28.8 25.4 2 6 0.0011 0.49 10.6 4.6 6 34 41 76 39 81 0.83 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF583-207 - 198 1e-06 28.8 25.4 3 6 0.0015 0.67 10.1 6.3 6 35 69 105 67 109 0.89 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF583-207 - 198 1e-06 28.8 25.4 4 6 0.0038 1.8 8.8 4.3 6 34 97 132 96 135 0.84 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF583-207 - 198 1e-06 28.8 25.4 5 6 7.1e-05 0.033 14.3 0.6 6 35 125 161 124 167 0.91 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF583-207 - 198 1e-06 28.8 25.4 6 6 0.0051 2.3 8.4 0.2 6 29 153 183 151 186 0.83 Zinc ribbon domain # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF583-207.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF583-207.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF583-207.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF583-207.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF583-207.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:10:04 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF583-208.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF583-208.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF583-208.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF583-208.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF583-208.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:10:04 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZNF584-201 - 421 5.8e-62 203.5 60.5 1 10 0.00051 0.26 11.8 0.2 9 25 153 169 150 170 0.87 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF584-201 - 421 5.8e-62 203.5 60.5 2 10 3.6e-05 0.019 15.4 0.0 2 26 174 198 173 198 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF584-201 - 421 5.8e-62 203.5 60.5 3 10 7.8e-07 0.0004 20.7 0.4 5 25 201 224 199 225 0.83 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF584-201 - 421 5.8e-62 203.5 60.5 4 10 9.8e-11 5e-08 33.0 2.0 2 25 229 252 228 253 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF584-201 - 421 5.8e-62 203.5 60.5 5 10 9.8e-12 5e-09 36.2 0.2 1 25 256 280 256 280 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF584-201 - 421 5.8e-62 203.5 60.5 6 10 4.9e-10 2.5e-07 30.8 1.3 2 26 285 309 284 309 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF584-201 - 421 5.8e-62 203.5 60.5 7 10 9.7e-10 5e-07 29.9 0.3 5 26 316 337 312 337 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF584-201 - 421 5.8e-62 203.5 60.5 8 10 6.3e-11 3.2e-08 33.6 0.3 2 26 341 365 340 365 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF584-201 - 421 5.8e-62 203.5 60.5 9 10 4.7e-08 2.4e-05 24.5 4.2 3 26 370 393 368 393 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF584-201 - 421 5.8e-62 203.5 60.5 10 10 0.12 59 4.3 0.4 3 13 398 408 397 411 0.84 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZNF584-201 - 421 2.1e-41 138.1 55.9 1 8 3.7e-05 0.019 15.4 0.2 1 23 159 181 159 181 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF584-201 - 421 2.1e-41 138.1 55.9 2 8 1.6e-08 8e-06 26.0 1.7 1 23 214 236 214 236 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF584-201 - 421 2.1e-41 138.1 55.9 3 8 1.9e-09 9.7e-07 28.9 0.5 1 23 242 264 242 264 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF584-201 - 421 2.1e-41 138.1 55.9 4 8 1.3e-07 6.8e-05 23.1 1.0 1 23 270 292 270 292 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF584-201 - 421 2.1e-41 138.1 55.9 5 8 9.1e-07 0.00047 20.5 1.3 1 23 298 320 298 320 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF584-201 - 421 2.1e-41 138.1 55.9 6 8 8.4e-06 0.0043 17.4 0.3 1 23 326 348 326 348 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF584-201 - 421 2.1e-41 138.1 55.9 7 8 3.9e-06 0.002 18.5 3.2 1 23 354 376 354 376 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF584-201 - 421 2.1e-41 138.1 55.9 8 8 1.9e-07 9.6e-05 22.6 2.0 1 23 382 404 382 404 0.98 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZNF584-201 - 421 3.8e-29 98.8 54.1 1 8 6.7e-06 0.0034 18.1 0.3 1 23 159 181 159 182 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF584-201 - 421 3.8e-29 98.8 54.1 2 8 1.8e-05 0.0093 16.7 1.7 1 23 214 236 214 237 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF584-201 - 421 3.8e-29 98.8 54.1 3 8 8.2e-06 0.0042 17.8 0.4 1 23 242 264 242 265 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF584-201 - 421 3.8e-29 98.8 54.1 4 8 4.8e-06 0.0025 18.5 0.6 1 23 270 292 270 293 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF584-201 - 421 3.8e-29 98.8 54.1 5 8 0.00093 0.48 11.4 1.0 1 23 298 320 298 321 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF584-201 - 421 3.8e-29 98.8 54.1 6 8 1.1e-06 0.00057 20.5 0.5 1 23 326 348 326 349 0.97 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF584-201 - 421 3.8e-29 98.8 54.1 7 8 0.00013 0.064 14.1 1.9 1 23 354 376 354 377 0.82 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF584-201 - 421 3.8e-29 98.8 54.1 8 8 3.6e-05 0.019 15.8 2.0 1 23 382 404 382 405 0.94 C2H2-type zinc finger KRAB PF01352.27 42 ZNF584-201 - 421 3.9e-21 74.4 0.6 1 1 1.3e-23 6.4e-21 73.7 0.6 1 42 16 57 16 57 0.98 KRAB box zf-C2H2_6 PF13912.6 27 ZNF584-201 - 421 5.5e-16 58.1 52.1 1 8 0.00081 0.41 10.7 0.1 2 26 159 183 158 184 0.90 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF584-201 - 421 5.5e-16 58.1 52.1 2 8 6.4e-05 0.033 14.2 1.6 1 24 213 236 213 238 0.91 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF584-201 - 421 5.5e-16 58.1 52.1 3 8 0.00033 0.17 11.9 0.2 2 21 242 261 242 266 0.86 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF584-201 - 421 5.5e-16 58.1 52.1 4 8 3e-05 0.015 15.2 0.4 2 24 270 292 270 294 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF584-201 - 421 5.5e-16 58.1 52.1 5 8 0.0038 1.9 8.6 1.1 2 13 298 309 298 320 0.88 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF584-201 - 421 5.5e-16 58.1 52.1 6 8 0.0052 2.7 8.1 0.4 2 13 326 337 326 348 0.85 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF584-201 - 421 5.5e-16 58.1 52.1 7 8 0.00055 0.28 11.2 0.7 2 13 354 365 354 365 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF584-201 - 421 5.5e-16 58.1 52.1 8 8 0.00064 0.33 11.0 1.6 2 22 382 402 381 407 0.76 C2H2-type zinc finger Zn-ribbon_8 PF09723.10 40 ZNF584-201 - 421 2.1e-10 40.5 36.7 1 7 0.0029 1.5 9.0 0.1 6 37 159 197 158 200 0.71 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF584-201 - 421 2.1e-10 40.5 36.7 2 7 0.0025 1.3 9.2 2.3 7 38 215 253 213 254 0.82 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF584-201 - 421 2.1e-10 40.5 36.7 3 7 4e-05 0.021 15.0 2.9 6 35 242 278 239 280 0.89 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF584-201 - 421 2.1e-10 40.5 36.7 4 7 0.00057 0.29 11.3 0.1 6 20 270 284 269 291 0.87 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF584-201 - 421 2.1e-10 40.5 36.7 5 7 7.4e-05 0.038 14.1 1.9 6 38 298 338 297 339 0.88 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF584-201 - 421 2.1e-10 40.5 36.7 6 7 0.00083 0.42 10.8 6.3 6 35 354 390 353 393 0.85 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF584-201 - 421 2.1e-10 40.5 36.7 7 7 0.0039 2 8.6 0.7 6 17 382 393 381 407 0.78 Zinc ribbon domain zf-C2H2_jaz PF12171.8 27 ZNF584-201 - 421 1.4e-09 38.0 33.7 1 9 5.3 2.7e+03 -1.2 0.0 13 23 105 115 102 116 0.87 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF584-201 - 421 1.4e-09 38.0 33.7 2 9 0.015 7.4 7.0 0.1 2 24 159 181 158 182 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF584-201 - 421 1.4e-09 38.0 33.7 3 9 0.25 1.3e+02 3.0 0.4 3 22 215 234 213 234 0.90 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF584-201 - 421 1.4e-09 38.0 33.7 4 9 0.0017 0.89 9.9 0.0 2 22 242 262 241 262 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF584-201 - 421 1.4e-09 38.0 33.7 5 9 1.4 7.2e+02 0.6 0.0 2 20 270 288 269 290 0.73 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF584-201 - 421 1.4e-09 38.0 33.7 6 9 0.005 2.5 8.5 0.8 2 22 298 318 297 318 0.91 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF584-201 - 421 1.4e-09 38.0 33.7 7 9 0.075 38 4.7 0.1 2 21 326 345 325 346 0.82 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF584-201 - 421 1.4e-09 38.0 33.7 8 9 0.0067 3.5 8.0 0.1 2 20 354 372 353 374 0.81 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF584-201 - 421 1.4e-09 38.0 33.7 9 9 5.6e-05 0.029 14.7 0.7 2 22 382 402 381 402 0.95 Zinc-finger double-stranded RNA-binding zf_UBZ PF18439.1 32 ZNF584-201 - 421 5.1e-08 32.4 28.0 1 8 0.0031 1.6 8.4 0.0 3 20 159 177 153 178 0.84 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF584-201 - 421 5.1e-08 32.4 28.0 2 8 0.029 15 5.3 0.1 3 17 214 229 212 233 0.75 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF584-201 - 421 5.1e-08 32.4 28.0 3 8 0.012 6.4 6.5 0.1 3 13 242 252 240 257 0.85 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF584-201 - 421 5.1e-08 32.4 28.0 4 8 0.0033 1.7 8.3 0.1 3 14 270 281 268 288 0.88 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF584-201 - 421 5.1e-08 32.4 28.0 5 8 0.057 29 4.3 0.2 3 12 298 307 296 312 0.88 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF584-201 - 421 5.1e-08 32.4 28.0 6 8 0.38 1.9e+02 1.7 0.3 3 10 326 333 325 336 0.88 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF584-201 - 421 5.1e-08 32.4 28.0 7 8 0.13 68 3.2 0.1 3 15 354 366 352 376 0.77 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF584-201 - 421 5.1e-08 32.4 28.0 8 8 0.002 1 9.0 0.3 2 20 381 400 380 401 0.88 Ubiquitin-Binding Zinc Finger # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF584-201.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF584-201.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF584-201.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF584-201.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF584-201.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:10:05 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- KRAB PF01352.27 42 ZNF584-202 - 145 7.2e-22 76.8 0.6 1 1 1.3e-25 1.2e-21 76.1 0.6 1 42 8 49 8 49 0.98 KRAB box # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF584-202.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF584-202.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF584-202.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF584-202.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF584-202.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:10:05 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZNF584-203 - 376 1.4e-62 205.4 60.5 1 10 0.00045 0.23 12.0 0.2 9 25 108 124 105 125 0.87 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF584-203 - 376 1.4e-62 205.4 60.5 2 10 3.2e-05 0.016 15.6 0.0 2 26 129 153 128 153 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF584-203 - 376 1.4e-62 205.4 60.5 3 10 6.8e-07 0.00035 20.9 0.4 5 25 156 179 154 180 0.83 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF584-203 - 376 1.4e-62 205.4 60.5 4 10 8.5e-11 4.4e-08 33.2 2.0 2 25 184 207 183 208 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF584-203 - 376 1.4e-62 205.4 60.5 5 10 8.5e-12 4.4e-09 36.4 0.2 1 25 211 235 211 235 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF584-203 - 376 1.4e-62 205.4 60.5 6 10 4.3e-10 2.2e-07 31.0 1.3 2 26 240 264 239 264 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF584-203 - 376 1.4e-62 205.4 60.5 7 10 8.4e-10 4.3e-07 30.1 0.3 5 26 271 292 267 292 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF584-203 - 376 1.4e-62 205.4 60.5 8 10 5.5e-11 2.8e-08 33.8 0.3 2 26 296 320 295 320 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF584-203 - 376 1.4e-62 205.4 60.5 9 10 4.1e-08 2.1e-05 24.7 4.2 3 26 325 348 323 348 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF584-203 - 376 1.4e-62 205.4 60.5 10 10 0.1 52 4.5 0.4 3 13 353 363 352 366 0.84 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZNF584-203 - 376 6.6e-42 139.7 55.9 1 8 3.2e-05 0.016 15.6 0.2 1 23 114 136 114 136 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF584-203 - 376 6.6e-42 139.7 55.9 2 8 1.4e-08 7e-06 26.2 1.7 1 23 169 191 169 191 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF584-203 - 376 6.6e-42 139.7 55.9 3 8 1.6e-09 8.4e-07 29.1 0.5 1 23 197 219 197 219 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF584-203 - 376 6.6e-42 139.7 55.9 4 8 1.2e-07 6e-05 23.3 1.0 1 23 225 247 225 247 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF584-203 - 376 6.6e-42 139.7 55.9 5 8 7.9e-07 0.00041 20.7 1.3 1 23 253 275 253 275 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF584-203 - 376 6.6e-42 139.7 55.9 6 8 7.3e-06 0.0037 17.6 0.3 1 23 281 303 281 303 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF584-203 - 376 6.6e-42 139.7 55.9 7 8 3.4e-06 0.0017 18.7 3.2 1 23 309 331 309 331 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF584-203 - 376 6.6e-42 139.7 55.9 8 8 1.6e-07 8.4e-05 22.8 2.0 1 23 337 359 337 359 0.98 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZNF584-203 - 376 1.2e-29 100.4 54.1 1 8 5.8e-06 0.003 18.3 0.3 1 23 114 136 114 137 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF584-203 - 376 1.2e-29 100.4 54.1 2 8 1.6e-05 0.0081 16.9 1.7 1 23 169 191 169 192 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF584-203 - 376 1.2e-29 100.4 54.1 3 8 7.1e-06 0.0036 18.0 0.4 1 23 197 219 197 220 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF584-203 - 376 1.2e-29 100.4 54.1 4 8 4.2e-06 0.0021 18.7 0.6 1 23 225 247 225 248 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF584-203 - 376 1.2e-29 100.4 54.1 5 8 0.00081 0.41 11.6 1.0 1 23 253 275 253 276 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF584-203 - 376 1.2e-29 100.4 54.1 6 8 9.6e-07 0.00049 20.7 0.5 1 23 281 303 281 304 0.97 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF584-203 - 376 1.2e-29 100.4 54.1 7 8 0.00011 0.056 14.3 1.9 1 23 309 331 309 332 0.82 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF584-203 - 376 1.2e-29 100.4 54.1 8 8 3.1e-05 0.016 16.0 2.0 1 23 337 359 337 360 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF584-203 - 376 1.9e-16 59.6 52.1 1 8 0.0007 0.36 10.9 0.1 2 26 114 138 113 139 0.91 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF584-203 - 376 1.9e-16 59.6 52.1 2 8 5.6e-05 0.029 14.4 1.6 1 24 168 191 168 193 0.91 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF584-203 - 376 1.9e-16 59.6 52.1 3 8 0.00029 0.15 12.1 0.2 2 21 197 216 197 221 0.86 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF584-203 - 376 1.9e-16 59.6 52.1 4 8 2.6e-05 0.013 15.4 0.4 2 24 225 247 225 249 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF584-203 - 376 1.9e-16 59.6 52.1 5 8 0.0033 1.7 8.7 1.1 2 13 253 264 253 275 0.87 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF584-203 - 376 1.9e-16 59.6 52.1 6 8 0.0046 2.3 8.3 0.4 2 13 281 292 281 303 0.85 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF584-203 - 376 1.9e-16 59.6 52.1 7 8 0.00048 0.25 11.4 0.7 2 13 309 320 309 320 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF584-203 - 376 1.9e-16 59.6 52.1 8 8 0.00056 0.29 11.2 1.6 2 22 337 357 336 362 0.76 C2H2-type zinc finger Zn-ribbon_8 PF09723.10 40 ZNF584-203 - 376 6e-11 42.3 36.2 1 7 0.0025 1.3 9.2 0.1 6 37 114 152 113 155 0.71 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF584-203 - 376 6e-11 42.3 36.2 2 7 0.0021 1.1 9.4 2.3 7 38 170 208 168 209 0.82 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF584-203 - 376 6e-11 42.3 36.2 3 7 3.6e-05 0.019 15.1 3.0 6 35 197 233 194 235 0.89 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF584-203 - 376 6e-11 42.3 36.2 4 7 0.00049 0.25 11.5 0.1 6 20 225 239 224 246 0.87 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF584-203 - 376 6e-11 42.3 36.2 5 7 6.3e-05 0.032 14.3 1.9 6 38 253 293 252 294 0.88 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF584-203 - 376 6e-11 42.3 36.2 6 7 0.00057 0.29 11.3 6.0 6 35 309 345 308 348 0.85 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF584-203 - 376 6e-11 42.3 36.2 7 7 0.0031 1.6 8.9 0.6 6 17 337 348 335 362 0.79 Zinc ribbon domain zf-C2H2_jaz PF12171.8 27 ZNF584-203 - 376 3.9e-10 39.8 33.5 1 9 4.3 2.2e+03 -0.9 0.0 13 23 60 70 57 72 0.87 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF584-203 - 376 3.9e-10 39.8 33.5 2 9 0.013 6.5 7.2 0.1 2 24 114 136 113 137 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF584-203 - 376 3.9e-10 39.8 33.5 3 9 0.22 1.1e+02 3.2 0.4 3 22 170 189 168 189 0.90 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF584-203 - 376 3.9e-10 39.8 33.5 4 9 0.0015 0.77 10.1 0.0 2 22 197 217 196 217 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF584-203 - 376 3.9e-10 39.8 33.5 5 9 1.2 6.3e+02 0.8 0.0 2 20 225 243 224 245 0.73 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF584-203 - 376 3.9e-10 39.8 33.5 6 9 0.0043 2.2 8.7 0.8 2 22 253 273 252 273 0.91 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF584-203 - 376 3.9e-10 39.8 33.5 7 9 0.065 33 4.9 0.1 2 21 281 300 280 301 0.82 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF584-203 - 376 3.9e-10 39.8 33.5 8 9 0.0059 3 8.2 0.1 2 20 309 327 308 329 0.81 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF584-203 - 376 3.9e-10 39.8 33.5 9 9 4.9e-05 0.025 14.9 0.7 2 22 337 357 336 357 0.95 Zinc-finger double-stranded RNA-binding zf_UBZ PF18439.1 32 ZNF584-203 - 376 2.6e-08 33.3 28.6 1 8 0.0027 1.4 8.6 0.0 3 20 114 132 112 133 0.81 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF584-203 - 376 2.6e-08 33.3 28.6 2 8 0.025 13 5.5 0.1 3 17 169 184 167 188 0.75 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF584-203 - 376 2.6e-08 33.3 28.6 3 8 0.011 5.6 6.6 0.1 3 13 197 207 195 212 0.85 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF584-203 - 376 2.6e-08 33.3 28.6 4 8 0.0029 1.5 8.5 0.1 3 14 225 236 223 243 0.88 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF584-203 - 376 2.6e-08 33.3 28.6 5 8 0.051 26 4.5 0.2 3 12 253 262 251 267 0.88 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF584-203 - 376 2.6e-08 33.3 28.6 6 8 0.33 1.7e+02 1.9 0.3 3 10 281 288 280 291 0.88 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF584-203 - 376 2.6e-08 33.3 28.6 7 8 0.12 60 3.4 0.1 3 15 309 321 307 331 0.77 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF584-203 - 376 2.6e-08 33.3 28.6 8 8 0.0018 0.9 9.2 0.3 2 20 336 355 335 356 0.88 Ubiquitin-Binding Zinc Finger # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF584-203.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF584-203.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF584-203.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF584-203.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF584-203.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:10:06 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF584-204.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF584-204.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF584-204.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF584-204.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF584-204.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:10:06 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF584-205.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF584-205.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF584-205.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF584-205.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF584-205.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:10:06 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF584-206.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF584-206.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF584-206.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF584-206.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF584-206.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:10:07 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF584-207.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF584-207.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF584-207.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF584-207.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF584-207.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:10:07 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF584-208.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF584-208.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF584-208.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF584-208.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF584-208.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:10:07 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF584-209.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF584-209.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF584-209.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF584-209.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF584-209.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:10:08 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZNF585A-201 - 769 3.3e-150 482.5 125.3 1 23 4.4 3e+03 -1.0 0.1 11 17 126 132 125 134 0.85 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF585A-201 - 769 3.3e-150 482.5 125.3 2 23 7.9e-05 0.052 14.0 0.0 3 25 146 168 144 169 0.78 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF585A-201 - 769 3.3e-150 482.5 125.3 3 23 5.9e-07 0.00039 20.7 2.1 5 24 176 195 174 197 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF585A-201 - 769 3.3e-150 482.5 125.3 4 23 1.6e-10 1.1e-07 32.0 0.4 2 25 201 224 200 225 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF585A-201 - 769 3.3e-150 482.5 125.3 5 23 1.8e-08 1.2e-05 25.5 0.8 2 25 229 252 228 253 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF585A-201 - 769 3.3e-150 482.5 125.3 6 23 7e-06 0.0047 17.3 0.0 2 24 257 279 256 281 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF585A-201 - 769 3.3e-150 482.5 125.3 7 23 3.2e-11 2.1e-08 34.2 0.4 1 24 284 307 284 309 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF585A-201 - 769 3.3e-150 482.5 125.3 8 23 4.3e-05 0.028 14.8 0.1 2 26 313 337 312 337 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF585A-201 - 769 3.3e-150 482.5 125.3 9 23 0.027 18 6.0 0.2 1 25 340 364 340 365 0.84 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF585A-201 - 769 3.3e-150 482.5 125.3 10 23 4.6e-11 3e-08 33.7 0.1 5 25 372 392 368 393 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF585A-201 - 769 3.3e-150 482.5 125.3 11 23 2.1e-06 0.0014 19.0 0.0 1 24 396 419 396 421 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF585A-201 - 769 3.3e-150 482.5 125.3 12 23 5.6e-08 3.7e-05 23.9 1.9 1 26 424 449 424 449 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF585A-201 - 769 3.3e-150 482.5 125.3 13 23 3.1e-09 2e-06 27.9 2.2 5 26 456 477 453 477 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF585A-201 - 769 3.3e-150 482.5 125.3 14 23 2.1e-08 1.4e-05 25.3 0.5 1 25 480 504 480 505 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF585A-201 - 769 3.3e-150 482.5 125.3 15 23 6.3e-11 4.2e-08 33.3 0.2 2 25 509 532 508 533 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF585A-201 - 769 3.3e-150 482.5 125.3 16 23 2e-09 1.3e-06 28.5 1.2 1 25 536 560 536 561 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF585A-201 - 769 3.3e-150 482.5 125.3 17 23 1.2e-08 8e-06 26.0 0.1 5 24 568 587 565 589 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF585A-201 - 769 3.3e-150 482.5 125.3 18 23 3.4e-11 2.3e-08 34.1 0.5 4 26 595 617 592 617 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF585A-201 - 769 3.3e-150 482.5 125.3 19 23 1.7e-07 0.00011 22.4 0.2 5 25 624 644 621 644 0.89 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF585A-201 - 769 3.3e-150 482.5 125.3 20 23 1.9e-10 1.2e-07 31.8 1.0 1 25 648 672 648 673 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF585A-201 - 769 3.3e-150 482.5 125.3 21 23 3.9e-10 2.6e-07 30.8 1.4 3 26 678 701 676 701 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF585A-201 - 769 3.3e-150 482.5 125.3 22 23 3.6e-10 2.4e-07 30.9 0.1 2 25 705 728 704 729 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF585A-201 - 769 3.3e-150 482.5 125.3 23 23 1.3e-09 8.9e-07 29.1 0.2 1 25 732 756 732 757 0.96 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZNF585A-201 - 769 3e-129 414.8 144.1 1 23 0.011 7.3 7.3 0.0 8 21 137 150 131 151 0.90 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF585A-201 - 769 3e-129 414.8 144.1 2 23 4.7e-05 0.031 14.7 0.1 1 23 158 180 158 180 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF585A-201 - 769 3e-129 414.8 144.1 3 23 5.9e-08 3.9e-05 23.9 1.7 1 23 186 208 186 208 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF585A-201 - 769 3e-129 414.8 144.1 4 23 1.6e-06 0.0011 19.3 0.2 1 23 214 236 214 236 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF585A-201 - 769 3e-129 414.8 144.1 5 23 4.5e-08 3e-05 24.2 2.0 1 23 242 264 242 264 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF585A-201 - 769 3e-129 414.8 144.1 6 23 3.2e-05 0.022 15.2 0.2 1 23 270 292 270 292 0.93 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF585A-201 - 769 3e-129 414.8 144.1 7 23 2.3e-09 1.6e-06 28.3 0.6 1 23 298 320 298 320 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF585A-201 - 769 3e-129 414.8 144.1 8 23 0.0025 1.6 9.3 0.0 6 21 328 346 325 347 0.80 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF585A-201 - 769 3e-129 414.8 144.1 9 23 2.1e-07 0.00014 22.1 0.1 3 23 356 376 355 376 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF585A-201 - 769 3e-129 414.8 144.1 10 23 9.4e-10 6.2e-07 29.5 0.2 1 23 382 404 382 404 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF585A-201 - 769 3e-129 414.8 144.1 11 23 1.2e-05 0.008 16.6 0.1 1 23 410 432 410 432 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF585A-201 - 769 3e-129 414.8 144.1 12 23 8e-06 0.0053 17.1 6.5 1 23 438 460 438 460 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF585A-201 - 769 3e-129 414.8 144.1 13 23 5e-09 3.3e-06 27.2 1.4 1 23 466 488 466 488 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF585A-201 - 769 3e-129 414.8 144.1 14 23 1.4e-08 9e-06 25.9 0.4 1 23 494 516 494 516 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF585A-201 - 769 3e-129 414.8 144.1 15 23 8.5e-09 5.7e-06 26.5 1.5 1 23 522 544 522 544 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF585A-201 - 769 3e-129 414.8 144.1 16 23 3.5e-07 0.00023 21.4 0.4 1 23 550 572 550 572 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF585A-201 - 769 3e-129 414.8 144.1 17 23 1e-08 6.8e-06 26.3 0.4 1 23 578 600 578 600 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF585A-201 - 769 3e-129 414.8 144.1 18 23 4.5e-08 3e-05 24.2 0.4 1 20 606 625 606 628 0.94 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF585A-201 - 769 3e-129 414.8 144.1 19 23 2e-08 1.3e-05 25.4 0.3 1 23 634 656 634 656 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF585A-201 - 769 3e-129 414.8 144.1 20 23 3.7e-08 2.4e-05 24.5 1.7 1 23 662 684 662 684 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF585A-201 - 769 3e-129 414.8 144.1 21 23 4.4e-10 2.9e-07 30.6 0.9 1 23 690 712 690 712 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF585A-201 - 769 3e-129 414.8 144.1 22 23 4.8e-09 3.2e-06 27.3 0.4 1 23 718 740 718 740 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF585A-201 - 769 3e-129 414.8 144.1 23 23 2.1e-06 0.0014 19.0 0.3 1 23 746 768 746 768 0.98 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZNF585A-201 - 769 4.8e-69 223.0 139.8 1 23 0.8 5.3e+02 1.9 0.0 8 21 137 150 131 152 0.85 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF585A-201 - 769 4.8e-69 223.0 139.8 2 23 0.00044 0.29 12.1 0.1 1 23 158 180 158 181 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF585A-201 - 769 4.8e-69 223.0 139.8 3 23 2.1e-05 0.014 16.2 1.7 1 23 186 208 186 209 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF585A-201 - 769 4.8e-69 223.0 139.8 4 23 1.1e-05 0.0074 17.0 0.2 1 23 214 236 214 237 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF585A-201 - 769 4.8e-69 223.0 139.8 5 23 0.00013 0.084 13.8 1.4 1 23 242 264 242 265 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF585A-201 - 769 4.8e-69 223.0 139.8 6 23 0.00064 0.42 11.6 0.2 1 23 270 292 270 293 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF585A-201 - 769 4.8e-69 223.0 139.8 7 23 4.5e-06 0.003 18.3 0.7 1 23 298 320 298 321 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF585A-201 - 769 4.8e-69 223.0 139.8 8 23 0.22 1.5e+02 3.6 0.0 6 21 328 346 326 349 0.80 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF585A-201 - 769 4.8e-69 223.0 139.8 9 23 0.00049 0.33 11.9 0.1 2 23 355 376 354 377 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF585A-201 - 769 4.8e-69 223.0 139.8 10 23 2.7e-05 0.018 15.9 0.2 1 23 382 404 382 405 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF585A-201 - 769 4.8e-69 223.0 139.8 11 23 0.019 13 7.0 0.1 1 23 410 432 410 433 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF585A-201 - 769 4.8e-69 223.0 139.8 12 23 0.00012 0.077 13.9 5.3 1 23 438 460 438 461 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF585A-201 - 769 4.8e-69 223.0 139.8 13 23 1.2e-05 0.0082 16.9 0.6 1 23 466 488 466 489 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF585A-201 - 769 4.8e-69 223.0 139.8 14 23 3.6e-05 0.024 15.5 0.3 1 23 494 516 494 517 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF585A-201 - 769 4.8e-69 223.0 139.8 15 23 0.00023 0.15 13.0 1.0 1 23 522 544 522 545 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF585A-201 - 769 4.8e-69 223.0 139.8 16 23 0.0002 0.14 13.1 0.5 1 23 550 572 550 573 0.89 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF585A-201 - 769 4.8e-69 223.0 139.8 17 23 0.00016 0.1 13.5 0.3 1 23 578 600 578 601 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF585A-201 - 769 4.8e-69 223.0 139.8 18 23 5.7e-06 0.0038 17.9 0.5 1 21 606 626 606 629 0.90 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF585A-201 - 769 4.8e-69 223.0 139.8 19 23 1.4e-05 0.0092 16.7 0.4 1 23 634 656 634 657 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF585A-201 - 769 4.8e-69 223.0 139.8 20 23 1.4e-05 0.009 16.8 1.1 1 23 662 684 662 685 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF585A-201 - 769 4.8e-69 223.0 139.8 21 23 4.4e-06 0.0029 18.3 0.8 1 23 690 712 690 713 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF585A-201 - 769 4.8e-69 223.0 139.8 22 23 5.3e-05 0.035 14.9 0.3 1 23 718 740 718 741 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF585A-201 - 769 4.8e-69 223.0 139.8 23 23 0.00014 0.092 13.6 0.3 1 23 746 768 746 769 0.94 C2H2-type zinc finger KRAB PF01352.27 42 ZNF585A-201 - 769 2.5e-24 84.6 0.0 1 1 6.9e-27 4.6e-24 83.8 0.0 1 42 26 67 26 67 0.99 KRAB box Zn-ribbon_8 PF09723.10 40 ZNF585A-201 - 769 2.8e-24 84.9 90.6 1 19 0.39 2.6e+02 1.8 0.4 6 15 158 167 129 170 0.72 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF585A-201 - 769 2.8e-24 84.9 90.6 2 19 0.016 10 6.3 3.3 6 34 158 193 157 195 0.82 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF585A-201 - 769 2.8e-24 84.9 90.6 3 19 0.0022 1.4 9.1 4.5 6 34 186 221 185 224 0.85 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF585A-201 - 769 2.8e-24 84.9 90.6 4 19 0.0015 1 9.6 3.9 6 36 214 251 213 256 0.82 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF585A-201 - 769 2.8e-24 84.9 90.6 5 19 0.0006 0.4 10.8 0.7 7 34 243 277 241 283 0.86 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF585A-201 - 769 2.8e-24 84.9 90.6 6 19 0.018 12 6.1 1.0 6 17 298 315 297 333 0.71 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF585A-201 - 769 2.8e-24 84.9 90.6 7 19 0.048 32 4.7 0.3 6 35 326 362 324 367 0.65 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF585A-201 - 769 2.8e-24 84.9 90.6 8 19 0.00067 0.44 10.7 2.9 8 35 356 390 352 393 0.90 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF585A-201 - 769 2.8e-24 84.9 90.6 9 19 2.3e-05 0.015 15.4 0.4 6 34 382 417 380 423 0.92 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF585A-201 - 769 2.8e-24 84.9 90.6 10 19 0.001 0.69 10.1 0.7 7 35 439 474 438 479 0.85 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF585A-201 - 769 2.8e-24 84.9 90.6 11 19 9.5e-05 0.063 13.4 0.8 6 36 466 503 465 506 0.87 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF585A-201 - 769 2.8e-24 84.9 90.6 12 19 3.9e-05 0.026 14.7 1.4 6 36 494 531 492 535 0.89 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF585A-201 - 769 2.8e-24 84.9 90.6 13 19 0.013 8.8 6.5 0.3 6 17 522 533 520 543 0.83 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF585A-201 - 769 2.8e-24 84.9 90.6 14 19 7.1e-07 0.00047 20.2 1.2 5 35 549 586 549 590 0.90 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF585A-201 - 769 2.8e-24 84.9 90.6 15 19 1.3e-05 0.0088 16.1 2.1 6 34 606 641 605 646 0.92 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF585A-201 - 769 2.8e-24 84.9 90.6 16 19 2.2e-05 0.015 15.4 2.0 6 37 634 672 633 674 0.92 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF585A-201 - 769 2.8e-24 84.9 90.6 17 19 6.1e-06 0.004 17.2 2.6 6 35 690 726 689 731 0.91 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF585A-201 - 769 2.8e-24 84.9 90.6 18 19 0.00048 0.32 11.2 1.8 6 38 718 758 716 760 0.87 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF585A-201 - 769 2.8e-24 84.9 90.6 19 19 0.33 2.2e+02 2.1 0.1 6 16 746 756 745 766 0.85 Zinc ribbon domain zf-C2H2_6 PF13912.6 27 ZNF585A-201 - 769 4.6e-15 55.2 144.5 1 22 0.18 1.2e+02 2.8 1.2 2 12 158 168 157 183 0.77 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF585A-201 - 769 4.6e-15 55.2 144.5 2 22 0.0019 1.3 9.1 1.3 2 11 186 195 186 209 0.79 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF585A-201 - 769 4.6e-15 55.2 144.5 3 22 0.00054 0.36 10.9 0.4 2 13 214 225 213 236 0.86 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF585A-201 - 769 4.6e-15 55.2 144.5 4 22 0.012 8.3 6.5 0.7 1 12 241 252 241 264 0.88 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF585A-201 - 769 4.6e-15 55.2 144.5 5 22 0.98 6.5e+02 0.5 0.8 2 22 270 290 269 294 0.72 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF585A-201 - 769 4.6e-15 55.2 144.5 6 22 0.01 6.8 6.8 1.0 2 11 298 307 298 311 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF585A-201 - 769 4.6e-15 55.2 144.5 7 22 0.58 3.9e+02 1.2 0.1 2 22 326 346 326 346 0.92 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF585A-201 - 769 4.6e-15 55.2 144.5 8 22 0.004 2.6 8.1 0.1 3 20 355 372 355 378 0.79 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF585A-201 - 769 4.6e-15 55.2 144.5 9 22 0.016 10 6.2 0.3 2 20 382 400 382 406 0.80 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF585A-201 - 769 4.6e-15 55.2 144.5 10 22 6.1 4e+03 -2.0 0.1 2 11 410 419 409 419 0.85 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF585A-201 - 769 4.6e-15 55.2 144.5 11 22 1.1 7.2e+02 0.4 4.6 2 22 438 458 438 462 0.82 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF585A-201 - 769 4.6e-15 55.2 144.5 12 22 0.00062 0.41 10.7 0.7 2 24 466 488 466 491 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF585A-201 - 769 4.6e-15 55.2 144.5 13 22 0.001 0.69 10.0 0.2 2 24 494 516 493 519 0.87 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF585A-201 - 769 4.6e-15 55.2 144.5 14 22 0.0045 3 8.0 0.4 2 12 522 532 522 542 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF585A-201 - 769 4.6e-15 55.2 144.5 15 22 0.0019 1.3 9.1 0.7 2 12 550 560 549 561 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF585A-201 - 769 4.6e-15 55.2 144.5 16 22 0.034 23 5.1 0.2 2 11 578 587 578 598 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF585A-201 - 769 4.6e-15 55.2 144.5 17 22 0.0048 3.2 7.9 1.6 2 13 606 617 606 618 0.96 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF585A-201 - 769 4.6e-15 55.2 144.5 18 22 0.0016 1.1 9.3 1.2 2 24 634 656 634 659 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF585A-201 - 769 4.6e-15 55.2 144.5 19 22 8.9e-05 0.059 13.4 0.9 2 22 662 682 662 686 0.88 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF585A-201 - 769 4.6e-15 55.2 144.5 20 22 0.012 8.2 6.6 1.4 2 12 690 700 690 702 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF585A-201 - 769 4.6e-15 55.2 144.5 21 22 0.00076 0.5 10.4 0.5 2 24 718 740 718 742 0.95 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF585A-201 - 769 4.6e-15 55.2 144.5 22 22 0.15 1e+02 3.1 0.2 2 11 746 755 746 756 0.93 C2H2-type zinc finger DZR PF12773.7 49 ZNF585A-201 - 769 1.4e-14 53.8 78.8 1 4 0.09 60 3.8 8.8 1 41 160 226 150 257 0.72 Double zinc ribbon DZR PF12773.7 49 ZNF585A-201 - 769 1.4e-14 53.8 78.8 2 4 0.0016 1 9.4 8.0 1 41 244 310 216 313 0.76 Double zinc ribbon DZR PF12773.7 49 ZNF585A-201 - 769 1.4e-14 53.8 78.8 3 4 0.00016 0.11 12.6 3.8 12 49 549 612 540 612 0.82 Double zinc ribbon DZR PF12773.7 49 ZNF585A-201 - 769 1.4e-14 53.8 78.8 4 4 0.44 2.9e+02 1.6 17.6 1 49 636 724 596 761 0.81 Double zinc ribbon DUF3268 PF11672.8 118 ZNF585A-201 - 769 5.5e-11 42.8 71.6 1 14 0.44 2.9e+02 1.8 0.1 21 40 148 168 124 182 0.71 zinc-finger-containing domain DUF3268 PF11672.8 118 ZNF585A-201 - 769 5.5e-11 42.8 71.6 2 14 0.012 8.2 6.8 0.3 2 37 185 220 184 232 0.85 zinc-finger-containing domain DUF3268 PF11672.8 118 ZNF585A-201 - 769 5.5e-11 42.8 71.6 3 14 0.002 1.3 9.3 0.5 3 38 242 277 240 290 0.89 zinc-finger-containing domain DUF3268 PF11672.8 118 ZNF585A-201 - 769 5.5e-11 42.8 71.6 4 14 0.048 32 4.9 0.3 2 36 297 331 296 346 0.86 zinc-finger-containing domain DUF3268 PF11672.8 118 ZNF585A-201 - 769 5.5e-11 42.8 71.6 5 14 0.00059 0.39 11.0 0.8 2 38 353 389 352 395 0.90 zinc-finger-containing domain DUF3268 PF11672.8 118 ZNF585A-201 - 769 5.5e-11 42.8 71.6 6 14 0.0013 0.84 10.0 1.1 2 37 381 416 380 425 0.90 zinc-finger-containing domain DUF3268 PF11672.8 118 ZNF585A-201 - 769 5.5e-11 42.8 71.6 7 14 0.0002 0.13 12.5 0.8 2 38 437 473 436 480 0.90 zinc-finger-containing domain DUF3268 PF11672.8 118 ZNF585A-201 - 769 5.5e-11 42.8 71.6 8 14 0.025 16 5.8 0.5 8 38 471 501 470 519 0.87 zinc-finger-containing domain DUF3268 PF11672.8 118 ZNF585A-201 - 769 5.5e-11 42.8 71.6 9 14 0.0021 1.4 9.3 1.8 2 38 521 557 520 564 0.91 zinc-finger-containing domain DUF3268 PF11672.8 118 ZNF585A-201 - 769 5.5e-11 42.8 71.6 10 14 0.0056 3.7 7.9 1.5 3 38 550 586 548 598 0.86 zinc-finger-containing domain DUF3268 PF11672.8 118 ZNF585A-201 - 769 5.5e-11 42.8 71.6 11 14 0.0061 4 7.8 0.7 2 39 577 614 576 629 0.79 zinc-finger-containing domain DUF3268 PF11672.8 118 ZNF585A-201 - 769 5.5e-11 42.8 71.6 12 14 0.0021 1.4 9.3 0.8 2 38 605 641 604 653 0.87 zinc-finger-containing domain DUF3268 PF11672.8 118 ZNF585A-201 - 769 5.5e-11 42.8 71.6 13 14 0.0036 2.4 8.5 1.0 2 41 633 672 632 680 0.88 zinc-finger-containing domain DUF3268 PF11672.8 118 ZNF585A-201 - 769 5.5e-11 42.8 71.6 14 14 0.00059 0.39 11.0 1.0 2 38 689 725 688 739 0.88 zinc-finger-containing domain zf_UBZ PF18439.1 32 ZNF585A-201 - 769 3e-10 39.5 84.3 1 21 0.13 86 2.9 0.1 3 13 158 168 156 177 0.80 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF585A-201 - 769 3e-10 39.5 84.3 2 21 0.12 80 3.0 0.3 3 12 186 195 184 198 0.89 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF585A-201 - 769 3e-10 39.5 84.3 3 21 0.023 15 5.2 0.1 3 13 214 224 212 233 0.79 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF585A-201 - 769 3e-10 39.5 84.3 4 21 0.22 1.4e+02 2.1 0.2 3 13 242 252 240 261 0.81 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF585A-201 - 769 3e-10 39.5 84.3 5 21 0.21 1.4e+02 2.2 0.1 2 12 269 279 268 288 0.85 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF585A-201 - 769 3e-10 39.5 84.3 6 21 0.0056 3.7 7.2 0.2 3 21 298 317 296 317 0.85 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF585A-201 - 769 3e-10 39.5 84.3 7 21 0.29 1.9e+02 1.7 0.1 4 12 355 363 352 369 0.86 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF585A-201 - 769 3e-10 39.5 84.3 8 21 0.022 14 5.3 0.1 3 14 382 393 380 401 0.78 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF585A-201 - 769 3e-10 39.5 84.3 9 21 0.6 4e+02 0.7 0.0 2 11 409 418 408 428 0.83 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF585A-201 - 769 3e-10 39.5 84.3 10 21 1 6.8e+02 -0.0 0.1 4 14 439 449 437 456 0.80 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF585A-201 - 769 3e-10 39.5 84.3 11 21 0.23 1.5e+02 2.1 0.1 3 13 466 476 464 485 0.78 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF585A-201 - 769 3e-10 39.5 84.3 12 21 0.0012 0.82 9.3 0.1 2 21 493 513 492 513 0.86 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF585A-201 - 769 3e-10 39.5 84.3 13 21 0.47 3.1e+02 1.1 0.1 3 13 522 532 520 537 0.84 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF585A-201 - 769 3e-10 39.5 84.3 14 21 0.059 39 3.9 0.2 2 13 549 560 548 565 0.85 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF585A-201 - 769 3e-10 39.5 84.3 15 21 0.068 45 3.8 0.1 3 12 578 587 576 597 0.78 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF585A-201 - 769 3e-10 39.5 84.3 16 21 0.0048 3.2 7.4 0.1 3 18 606 622 604 625 0.78 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF585A-201 - 769 3e-10 39.5 84.3 17 21 0.0072 4.8 6.9 0.1 3 13 634 644 632 653 0.82 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF585A-201 - 769 3e-10 39.5 84.3 18 21 0.0025 1.7 8.3 0.4 3 20 662 680 660 681 0.82 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF585A-201 - 769 3e-10 39.5 84.3 19 21 0.0032 2.1 8.0 0.2 3 21 690 709 688 709 0.85 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF585A-201 - 769 3e-10 39.5 84.3 20 21 0.0065 4.3 7.0 0.1 3 15 718 730 716 737 0.76 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF585A-201 - 769 3e-10 39.5 84.3 21 21 1.2 7.8e+02 -0.2 0.2 3 12 746 755 744 759 0.85 Ubiquitin-Binding Zinc Finger zf-C2H2_jaz PF12171.8 27 ZNF585A-201 - 769 6.9e-10 39.0 103.2 1 22 5.7 3.8e+03 -1.6 0.1 9 22 137 150 136 150 0.83 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF585A-201 - 769 6.9e-10 39.0 103.2 2 22 1.1 7.3e+02 0.6 0.2 3 11 159 167 158 184 0.83 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF585A-201 - 769 6.9e-10 39.0 103.2 3 22 0.67 4.4e+02 1.3 0.3 2 11 186 195 185 205 0.90 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF585A-201 - 769 6.9e-10 39.0 103.2 4 22 0.35 2.3e+02 2.2 0.2 2 22 214 234 213 234 0.84 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF585A-201 - 769 6.9e-10 39.0 103.2 5 22 0.13 89 3.5 1.4 2 22 242 262 241 262 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF585A-201 - 769 6.9e-10 39.0 103.2 6 22 5.7 3.8e+03 -1.6 0.2 2 8 270 276 269 289 0.78 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF585A-201 - 769 6.9e-10 39.0 103.2 7 22 3.4e-05 0.022 15.0 0.1 2 22 298 318 297 318 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF585A-201 - 769 6.9e-10 39.0 103.2 8 22 0.42 2.8e+02 2.0 0.1 9 22 333 346 332 346 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF585A-201 - 769 6.9e-10 39.0 103.2 9 22 2.5 1.6e+03 -0.5 0.1 3 11 355 363 353 373 0.87 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF585A-201 - 769 6.9e-10 39.0 103.2 10 22 0.33 2.2e+02 2.3 0.0 2 22 382 402 381 402 0.90 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF585A-201 - 769 6.9e-10 39.0 103.2 11 22 0.0028 1.8 8.9 0.4 2 22 438 458 437 458 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF585A-201 - 769 6.9e-10 39.0 103.2 12 22 0.031 21 5.6 0.5 2 24 466 488 465 488 0.90 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF585A-201 - 769 6.9e-10 39.0 103.2 13 22 5.2 3.5e+03 -1.5 0.1 2 21 494 513 493 514 0.83 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF585A-201 - 769 6.9e-10 39.0 103.2 14 22 1.1 7.1e+02 0.7 0.5 2 20 522 540 521 542 0.74 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF585A-201 - 769 6.9e-10 39.0 103.2 15 22 0.079 52 4.3 1.3 1 21 549 569 549 570 0.83 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF585A-201 - 769 6.9e-10 39.0 103.2 16 22 0.0056 3.7 7.9 0.0 2 22 578 598 577 598 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF585A-201 - 769 6.9e-10 39.0 103.2 17 22 0.004 2.7 8.4 0.1 2 20 606 624 605 625 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF585A-201 - 769 6.9e-10 39.0 103.2 18 22 0.002 1.3 9.4 0.2 2 24 634 656 633 656 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF585A-201 - 769 6.9e-10 39.0 103.2 19 22 0.054 36 4.8 0.1 2 20 662 680 661 680 0.84 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF585A-201 - 769 6.9e-10 39.0 103.2 20 22 0.001 0.68 10.3 0.2 2 22 690 710 689 710 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF585A-201 - 769 6.9e-10 39.0 103.2 21 22 0.0051 3.4 8.1 0.2 2 24 718 740 717 740 0.91 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF585A-201 - 769 6.9e-10 39.0 103.2 22 22 0.0043 2.9 8.3 0.1 2 24 746 768 745 769 0.94 Zinc-finger double-stranded RNA-binding zinc_ribbon_15 PF17032.5 86 ZNF585A-201 - 769 8.7e-09 36.0 88.3 1 14 0.79 5.2e+02 1.5 0.2 37 78 129 170 98 175 0.69 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF585A-201 - 769 8.7e-09 36.0 88.3 2 14 0.069 46 4.9 2.0 33 74 153 194 131 204 0.86 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF585A-201 - 769 8.7e-09 36.0 88.3 3 14 0.001 0.69 10.7 1.4 30 78 206 254 193 257 0.82 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF585A-201 - 769 8.7e-09 36.0 88.3 4 14 0.011 7.5 7.4 0.8 31 77 263 309 259 313 0.84 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF585A-201 - 769 8.7e-09 36.0 88.3 5 14 0.27 1.8e+02 3.0 4.3 36 75 296 363 286 369 0.60 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF585A-201 - 769 8.7e-09 36.0 88.3 6 14 0.028 19 6.1 3.3 31 75 375 419 369 453 0.82 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF585A-201 - 769 8.7e-09 36.0 88.3 7 14 0.0019 1.3 9.9 5.8 32 77 460 505 424 509 0.83 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF585A-201 - 769 8.7e-09 36.0 88.3 8 14 0.0077 5.1 7.9 6.0 30 78 514 562 509 593 0.84 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF585A-201 - 769 8.7e-09 36.0 88.3 9 14 0.0064 4.2 8.2 0.9 30 78 570 618 563 621 0.80 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF585A-201 - 769 8.7e-09 36.0 88.3 10 14 0.011 7.4 7.4 3.4 25 76 593 644 578 652 0.82 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF585A-201 - 769 8.7e-09 36.0 88.3 11 14 0.0004 0.26 12.0 1.3 34 79 630 675 623 679 0.85 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF585A-201 - 769 8.7e-09 36.0 88.3 12 14 0.0031 2.1 9.2 3.0 34 79 658 703 651 708 0.85 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF585A-201 - 769 8.7e-09 36.0 88.3 13 14 0.0013 0.84 10.4 1.2 30 77 682 729 676 733 0.84 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF585A-201 - 769 8.7e-09 36.0 88.3 14 14 0.0066 4.4 8.1 0.8 33 78 713 758 708 762 0.82 zinc-ribbon family C1_4 PF07975.12 55 ZNF585A-201 - 769 1.6e-08 34.7 93.6 1 17 2 1.3e+03 -0.3 0.3 22 41 126 145 107 165 0.51 TFIIH C1-like domain C1_4 PF07975.12 55 ZNF585A-201 - 769 1.6e-08 34.7 93.6 2 17 0.31 2.1e+02 2.3 0.6 14 48 140 180 128 183 0.65 TFIIH C1-like domain C1_4 PF07975.12 55 ZNF585A-201 - 769 1.6e-08 34.7 93.6 3 17 0.0096 6.4 7.1 2.4 2 49 160 209 159 212 0.82 TFIIH C1-like domain C1_4 PF07975.12 55 ZNF585A-201 - 769 1.6e-08 34.7 93.6 4 17 9.5e-06 0.0063 16.7 2.7 2 49 188 237 187 239 0.86 TFIIH C1-like domain C1_4 PF07975.12 55 ZNF585A-201 - 769 1.6e-08 34.7 93.6 5 17 0.014 9.5 6.5 2.1 1 48 243 292 243 295 0.81 TFIIH C1-like domain C1_4 PF07975.12 55 ZNF585A-201 - 769 1.6e-08 34.7 93.6 6 17 0.0027 1.8 8.9 1.5 2 49 272 321 271 324 0.86 TFIIH C1-like domain C1_4 PF07975.12 55 ZNF585A-201 - 769 1.6e-08 34.7 93.6 7 17 0.072 48 4.3 0.2 20 49 348 377 328 379 0.76 TFIIH C1-like domain C1_4 PF07975.12 55 ZNF585A-201 - 769 1.6e-08 34.7 93.6 8 17 0.024 16 5.8 1.2 2 49 356 405 355 407 0.77 TFIIH C1-like domain C1_4 PF07975.12 55 ZNF585A-201 - 769 1.6e-08 34.7 93.6 9 17 0.02 13 6.1 1.5 1 49 383 433 383 435 0.86 TFIIH C1-like domain C1_4 PF07975.12 55 ZNF585A-201 - 769 1.6e-08 34.7 93.6 10 17 0.08 53 4.1 3.0 2 49 412 461 411 464 0.86 TFIIH C1-like domain C1_4 PF07975.12 55 ZNF585A-201 - 769 1.6e-08 34.7 93.6 11 17 0.00064 0.42 10.9 1.7 2 49 468 517 467 519 0.86 TFIIH C1-like domain C1_4 PF07975.12 55 ZNF585A-201 - 769 1.6e-08 34.7 93.6 12 17 0.0044 2.9 8.2 3.0 2 49 496 545 496 547 0.87 TFIIH C1-like domain C1_4 PF07975.12 55 ZNF585A-201 - 769 1.6e-08 34.7 93.6 13 17 0.0073 4.8 7.5 4.6 1 49 523 573 523 575 0.82 TFIIH C1-like domain C1_4 PF07975.12 55 ZNF585A-201 - 769 1.6e-08 34.7 93.6 14 17 0.0042 2.8 8.3 0.8 2 49 580 629 579 631 0.86 TFIIH C1-like domain C1_4 PF07975.12 55 ZNF585A-201 - 769 1.6e-08 34.7 93.6 15 17 0.0072 4.8 7.5 1.1 2 49 636 685 635 687 0.80 TFIIH C1-like domain C1_4 PF07975.12 55 ZNF585A-201 - 769 1.6e-08 34.7 93.6 16 17 0.014 9.2 6.6 2.7 2 49 664 713 663 716 0.85 TFIIH C1-like domain C1_4 PF07975.12 55 ZNF585A-201 - 769 1.6e-08 34.7 93.6 17 17 0.029 19 5.6 1.3 2 47 720 767 719 769 0.69 TFIIH C1-like domain XPA_N PF01286.18 32 ZNF585A-201 - 769 7.8e-08 32.2 76.4 1 21 0.04 26 5.0 0.1 3 12 159 168 158 169 0.88 XPA protein N-terminal XPA_N PF01286.18 32 ZNF585A-201 - 769 7.8e-08 32.2 76.4 2 21 0.031 21 5.3 0.3 3 11 187 195 185 204 0.74 XPA protein N-terminal XPA_N PF01286.18 32 ZNF585A-201 - 769 7.8e-08 32.2 76.4 3 21 0.42 2.8e+02 1.7 0.1 3 11 215 223 214 225 0.89 XPA protein N-terminal XPA_N PF01286.18 32 ZNF585A-201 - 769 7.8e-08 32.2 76.4 4 21 0.083 55 3.9 0.4 3 12 243 252 241 255 0.88 XPA protein N-terminal XPA_N PF01286.18 32 ZNF585A-201 - 769 7.8e-08 32.2 76.4 5 21 0.093 62 3.8 0.1 3 12 271 280 270 281 0.87 XPA protein N-terminal XPA_N PF01286.18 32 ZNF585A-201 - 769 7.8e-08 32.2 76.4 6 21 0.36 2.4e+02 1.9 0.1 3 12 299 308 297 315 0.85 XPA protein N-terminal XPA_N PF01286.18 32 ZNF585A-201 - 769 7.8e-08 32.2 76.4 7 21 0.048 32 4.7 0.1 3 12 355 364 353 365 0.88 XPA protein N-terminal XPA_N PF01286.18 32 ZNF585A-201 - 769 7.8e-08 32.2 76.4 8 21 0.089 59 3.8 0.2 3 12 383 392 381 396 0.89 XPA protein N-terminal XPA_N PF01286.18 32 ZNF585A-201 - 769 7.8e-08 32.2 76.4 9 21 1.9 1.3e+03 -0.4 0.0 3 11 411 419 410 421 0.83 XPA protein N-terminal XPA_N PF01286.18 32 ZNF585A-201 - 769 7.8e-08 32.2 76.4 10 21 0.49 3.2e+02 1.5 0.1 3 12 439 448 437 453 0.85 XPA protein N-terminal XPA_N PF01286.18 32 ZNF585A-201 - 769 7.8e-08 32.2 76.4 11 21 0.087 58 3.9 0.0 3 12 467 476 465 484 0.85 XPA protein N-terminal XPA_N PF01286.18 32 ZNF585A-201 - 769 7.8e-08 32.2 76.4 12 21 0.13 83 3.3 0.0 3 12 495 504 494 511 0.90 XPA protein N-terminal XPA_N PF01286.18 32 ZNF585A-201 - 769 7.8e-08 32.2 76.4 13 21 0.24 1.6e+02 2.5 0.1 3 12 523 532 521 537 0.88 XPA protein N-terminal XPA_N PF01286.18 32 ZNF585A-201 - 769 7.8e-08 32.2 76.4 14 21 0.029 19 5.4 0.2 3 12 551 560 549 565 0.88 XPA protein N-terminal XPA_N PF01286.18 32 ZNF585A-201 - 769 7.8e-08 32.2 76.4 15 21 0.2 1.3e+02 2.7 0.0 3 11 579 587 577 589 0.88 XPA protein N-terminal XPA_N PF01286.18 32 ZNF585A-201 - 769 7.8e-08 32.2 76.4 16 21 0.074 49 4.1 0.2 3 12 607 616 605 624 0.79 XPA protein N-terminal XPA_N PF01286.18 32 ZNF585A-201 - 769 7.8e-08 32.2 76.4 17 21 0.044 29 4.8 0.0 3 12 635 644 633 652 0.84 XPA protein N-terminal XPA_N PF01286.18 32 ZNF585A-201 - 769 7.8e-08 32.2 76.4 18 21 0.036 24 5.1 0.1 3 12 663 672 661 681 0.84 XPA protein N-terminal XPA_N PF01286.18 32 ZNF585A-201 - 769 7.8e-08 32.2 76.4 19 21 0.1 68 3.6 0.2 3 12 691 700 689 707 0.85 XPA protein N-terminal XPA_N PF01286.18 32 ZNF585A-201 - 769 7.8e-08 32.2 76.4 20 21 0.013 8.6 6.5 0.0 3 13 719 729 717 733 0.91 XPA protein N-terminal XPA_N PF01286.18 32 ZNF585A-201 - 769 7.8e-08 32.2 76.4 21 21 5.5 3.7e+03 -1.9 0.1 3 11 747 755 746 757 0.83 XPA protein N-terminal ADK_lid PF05191.14 36 ZNF585A-201 - 769 5e-07 29.6 60.8 1 15 0.01 6.8 6.8 0.5 3 33 159 197 158 198 0.82 Adenylate kinase, active site lid ADK_lid PF05191.14 36 ZNF585A-201 - 769 5e-07 29.6 60.8 2 15 0.17 1.1e+02 2.9 1.7 4 33 244 281 214 283 0.54 Adenylate kinase, active site lid ADK_lid PF05191.14 36 ZNF585A-201 - 769 5e-07 29.6 60.8 3 15 0.024 16 5.6 0.3 4 34 300 366 298 368 0.63 Adenylate kinase, active site lid ADK_lid PF05191.14 36 ZNF585A-201 - 769 5e-07 29.6 60.8 4 15 0.11 73 3.5 0.4 3 34 355 394 354 395 0.69 Adenylate kinase, active site lid ADK_lid PF05191.14 36 ZNF585A-201 - 769 5e-07 29.6 60.8 5 15 0.13 86 3.2 0.1 4 33 384 421 382 423 0.72 Adenylate kinase, active site lid ADK_lid PF05191.14 36 ZNF585A-201 - 769 5e-07 29.6 60.8 6 15 0.14 96 3.1 0.2 3 29 411 445 410 450 0.73 Adenylate kinase, active site lid ADK_lid PF05191.14 36 ZNF585A-201 - 769 5e-07 29.6 60.8 7 15 0.028 18 5.4 0.7 4 35 440 479 435 480 0.80 Adenylate kinase, active site lid ADK_lid PF05191.14 36 ZNF585A-201 - 769 5e-07 29.6 60.8 8 15 8.8e-06 0.0059 16.6 0.3 3 36 467 508 466 508 0.84 Adenylate kinase, active site lid ADK_lid PF05191.14 36 ZNF585A-201 - 769 5e-07 29.6 60.8 9 15 3.8 2.5e+03 -1.5 0.1 24 33 524 533 521 536 0.69 Adenylate kinase, active site lid ADK_lid PF05191.14 36 ZNF585A-201 - 769 5e-07 29.6 60.8 10 15 0.011 7.4 6.6 0.7 4 33 552 589 550 591 0.74 Adenylate kinase, active site lid ADK_lid PF05191.14 36 ZNF585A-201 - 769 5e-07 29.6 60.8 11 15 0.0099 6.6 6.8 0.2 4 31 608 643 606 647 0.68 Adenylate kinase, active site lid ADK_lid PF05191.14 36 ZNF585A-201 - 769 5e-07 29.6 60.8 12 15 0.0025 1.6 8.7 1.9 3 33 635 673 634 675 0.82 Adenylate kinase, active site lid ADK_lid PF05191.14 36 ZNF585A-201 - 769 5e-07 29.6 60.8 13 15 0.055 37 4.4 1.3 3 31 663 699 662 703 0.70 Adenylate kinase, active site lid ADK_lid PF05191.14 36 ZNF585A-201 - 769 5e-07 29.6 60.8 14 15 0.0041 2.7 8.0 0.4 4 35 692 731 690 731 0.75 Adenylate kinase, active site lid ADK_lid PF05191.14 36 ZNF585A-201 - 769 5e-07 29.6 60.8 15 15 0.013 8.8 6.4 2.0 3 34 719 758 718 759 0.76 Adenylate kinase, active site lid zf-trcl PF13451.6 48 ZNF585A-201 - 769 6.4e-07 29.2 85.0 1 20 0.18 1.2e+02 2.7 3.8 3 39 156 191 155 194 0.70 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF585A-201 - 769 6.4e-07 29.2 85.0 2 20 0.038 25 4.8 0.5 2 14 183 195 182 199 0.88 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF585A-201 - 769 6.4e-07 29.2 85.0 3 20 0.47 3.1e+02 1.3 0.1 4 16 213 225 211 228 0.80 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF585A-201 - 769 6.4e-07 29.2 85.0 4 20 0.1 68 3.5 0.4 4 15 241 252 239 255 0.85 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF585A-201 - 769 6.4e-07 29.2 85.0 5 20 0.34 2.2e+02 1.8 0.1 4 15 269 280 267 282 0.88 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF585A-201 - 769 6.4e-07 29.2 85.0 6 20 0.063 42 4.2 0.0 3 15 296 308 294 316 0.86 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF585A-201 - 769 6.4e-07 29.2 85.0 7 20 0.029 19 5.2 0.1 3 16 352 365 350 368 0.84 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF585A-201 - 769 6.4e-07 29.2 85.0 8 20 0.031 20 5.1 0.1 3 15 380 392 378 395 0.89 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF585A-201 - 769 6.4e-07 29.2 85.0 9 20 0.54 3.6e+02 1.2 0.1 3 15 408 420 407 424 0.85 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF585A-201 - 769 6.4e-07 29.2 85.0 10 20 0.059 39 4.2 1.6 4 43 437 475 434 480 0.61 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF585A-201 - 769 6.4e-07 29.2 85.0 11 20 0.1 67 3.5 0.1 3 15 492 504 490 506 0.89 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF585A-201 - 769 6.4e-07 29.2 85.0 12 20 0.23 1.5e+02 2.4 0.1 3 15 520 532 518 535 0.87 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF585A-201 - 769 6.4e-07 29.2 85.0 13 20 0.42 2.8e+02 1.5 0.3 4 14 549 559 547 560 0.85 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF585A-201 - 769 6.4e-07 29.2 85.0 14 20 0.018 12 5.9 0.1 3 15 576 588 574 591 0.91 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF585A-201 - 769 6.4e-07 29.2 85.0 15 20 0.019 13 5.8 0.1 3 15 604 616 602 620 0.88 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF585A-201 - 769 6.4e-07 29.2 85.0 16 20 0.053 35 4.4 0.1 3 14 632 643 630 644 0.89 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF585A-201 - 769 6.4e-07 29.2 85.0 17 20 0.082 55 3.8 0.1 3 14 660 671 658 672 0.90 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF585A-201 - 769 6.4e-07 29.2 85.0 18 20 0.019 12 5.8 0.1 3 15 688 700 686 707 0.88 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF585A-201 - 769 6.4e-07 29.2 85.0 19 20 0.026 17 5.4 0.1 3 15 716 728 714 729 0.90 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF585A-201 - 769 6.4e-07 29.2 85.0 20 20 0.077 51 3.9 0.1 2 15 743 756 742 765 0.91 Probable zinc-ribbon domain # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF585A-201.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF585A-201.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF585A-201.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF585A-201.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF585A-201.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:10:08 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZNF585A-202 - 714 4.9e-151 485.1 125.3 1 23 3.8 2.7e+03 -0.9 0.1 11 17 71 77 70 79 0.85 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF585A-202 - 714 4.9e-151 485.1 125.3 2 23 6.7e-05 0.048 14.1 0.0 3 25 91 113 89 114 0.78 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF585A-202 - 714 4.9e-151 485.1 125.3 3 23 5.1e-07 0.00036 20.8 2.1 5 24 121 140 119 142 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF585A-202 - 714 4.9e-151 485.1 125.3 4 23 1.4e-10 9.9e-08 32.1 0.4 2 25 146 169 145 170 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF585A-202 - 714 4.9e-151 485.1 125.3 5 23 1.5e-08 1.1e-05 25.7 0.8 2 25 174 197 173 198 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF585A-202 - 714 4.9e-151 485.1 125.3 6 23 6e-06 0.0043 17.4 0.0 2 24 202 224 201 226 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF585A-202 - 714 4.9e-151 485.1 125.3 7 23 2.7e-11 2e-08 34.3 0.4 1 24 229 252 229 254 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF585A-202 - 714 4.9e-151 485.1 125.3 8 23 3.6e-05 0.026 14.9 0.1 2 26 258 282 257 282 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF585A-202 - 714 4.9e-151 485.1 125.3 9 23 0.023 16 6.1 0.2 1 25 285 309 285 310 0.84 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF585A-202 - 714 4.9e-151 485.1 125.3 10 23 3.9e-11 2.8e-08 33.8 0.1 5 25 317 337 313 338 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF585A-202 - 714 4.9e-151 485.1 125.3 11 23 1.8e-06 0.0013 19.1 0.0 1 24 341 364 341 366 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF585A-202 - 714 4.9e-151 485.1 125.3 12 23 4.8e-08 3.4e-05 24.1 1.9 1 26 369 394 369 394 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF585A-202 - 714 4.9e-151 485.1 125.3 13 23 2.6e-09 1.9e-06 28.0 2.2 5 26 401 422 398 422 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF585A-202 - 714 4.9e-151 485.1 125.3 14 23 1.8e-08 1.3e-05 25.4 0.5 1 25 425 449 425 450 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF585A-202 - 714 4.9e-151 485.1 125.3 15 23 5.4e-11 3.9e-08 33.4 0.2 2 25 454 477 453 478 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF585A-202 - 714 4.9e-151 485.1 125.3 16 23 1.7e-09 1.2e-06 28.6 1.2 1 25 481 505 481 506 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF585A-202 - 714 4.9e-151 485.1 125.3 17 23 1e-08 7.4e-06 26.2 0.1 5 24 513 532 510 534 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF585A-202 - 714 4.9e-151 485.1 125.3 18 23 2.9e-11 2.1e-08 34.2 0.5 4 26 540 562 537 562 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF585A-202 - 714 4.9e-151 485.1 125.3 19 23 1.4e-07 0.0001 22.5 0.2 5 25 569 589 566 589 0.89 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF585A-202 - 714 4.9e-151 485.1 125.3 20 23 1.6e-10 1.1e-07 31.9 1.0 1 25 593 617 593 618 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF585A-202 - 714 4.9e-151 485.1 125.3 21 23 3.3e-10 2.4e-07 30.9 1.4 3 26 623 646 621 646 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF585A-202 - 714 4.9e-151 485.1 125.3 22 23 3e-10 2.2e-07 31.0 0.1 2 25 650 673 649 674 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF585A-202 - 714 4.9e-151 485.1 125.3 23 23 1.1e-09 8.2e-07 29.2 0.2 1 25 677 701 677 702 0.96 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZNF585A-202 - 714 4.5e-130 417.4 144.1 1 23 0.0094 6.7 7.4 0.0 8 21 82 95 76 96 0.90 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF585A-202 - 714 4.5e-130 417.4 144.1 2 23 4e-05 0.028 14.9 0.1 1 23 103 125 103 125 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF585A-202 - 714 4.5e-130 417.4 144.1 3 23 5e-08 3.6e-05 24.0 1.7 1 23 131 153 131 153 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF585A-202 - 714 4.5e-130 417.4 144.1 4 23 1.4e-06 0.001 19.4 0.2 1 23 159 181 159 181 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF585A-202 - 714 4.5e-130 417.4 144.1 5 23 3.8e-08 2.7e-05 24.3 2.0 1 23 187 209 187 209 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF585A-202 - 714 4.5e-130 417.4 144.1 6 23 2.8e-05 0.02 15.3 0.2 1 23 215 237 215 237 0.93 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF585A-202 - 714 4.5e-130 417.4 144.1 7 23 2e-09 1.4e-06 28.4 0.6 1 23 243 265 243 265 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF585A-202 - 714 4.5e-130 417.4 144.1 8 23 0.0021 1.5 9.4 0.0 6 21 273 291 270 292 0.80 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF585A-202 - 714 4.5e-130 417.4 144.1 9 23 1.8e-07 0.00013 22.2 0.1 3 23 301 321 300 321 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF585A-202 - 714 4.5e-130 417.4 144.1 10 23 8e-10 5.7e-07 29.6 0.2 1 23 327 349 327 349 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF585A-202 - 714 4.5e-130 417.4 144.1 11 23 1e-05 0.0074 16.7 0.1 1 23 355 377 355 377 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF585A-202 - 714 4.5e-130 417.4 144.1 12 23 6.8e-06 0.0049 17.3 6.5 1 23 383 405 383 405 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF585A-202 - 714 4.5e-130 417.4 144.1 13 23 4.2e-09 3e-06 27.4 1.4 1 23 411 433 411 433 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF585A-202 - 714 4.5e-130 417.4 144.1 14 23 1.2e-08 8.3e-06 26.0 0.4 1 23 439 461 439 461 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF585A-202 - 714 4.5e-130 417.4 144.1 15 23 7.2e-09 5.2e-06 26.6 1.5 1 23 467 489 467 489 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF585A-202 - 714 4.5e-130 417.4 144.1 16 23 2.9e-07 0.00021 21.6 0.4 1 23 495 517 495 517 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF585A-202 - 714 4.5e-130 417.4 144.1 17 23 8.7e-09 6.2e-06 26.4 0.4 1 23 523 545 523 545 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF585A-202 - 714 4.5e-130 417.4 144.1 18 23 3.9e-08 2.8e-05 24.3 0.4 1 20 551 570 551 573 0.94 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF585A-202 - 714 4.5e-130 417.4 144.1 19 23 1.7e-08 1.2e-05 25.5 0.3 1 23 579 601 579 601 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF585A-202 - 714 4.5e-130 417.4 144.1 20 23 3.1e-08 2.2e-05 24.6 1.7 1 23 607 629 607 629 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF585A-202 - 714 4.5e-130 417.4 144.1 21 23 3.7e-10 2.7e-07 30.7 0.9 1 23 635 657 635 657 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF585A-202 - 714 4.5e-130 417.4 144.1 22 23 4.1e-09 2.9e-06 27.4 0.4 1 23 663 685 663 685 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF585A-202 - 714 4.5e-130 417.4 144.1 23 23 1.8e-06 0.0013 19.1 0.3 1 23 691 713 691 713 0.98 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZNF585A-202 - 714 7.1e-70 225.6 139.8 1 23 0.68 4.9e+02 2.0 0.0 8 21 82 95 76 97 0.85 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF585A-202 - 714 7.1e-70 225.6 139.8 2 23 0.00037 0.27 12.2 0.1 1 23 103 125 103 126 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF585A-202 - 714 7.1e-70 225.6 139.8 3 23 1.8e-05 0.013 16.3 1.7 1 23 131 153 131 154 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF585A-202 - 714 7.1e-70 225.6 139.8 4 23 9.4e-06 0.0068 17.2 0.2 1 23 159 181 159 182 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF585A-202 - 714 7.1e-70 225.6 139.8 5 23 0.00011 0.077 13.9 1.4 1 23 187 209 187 210 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF585A-202 - 714 7.1e-70 225.6 139.8 6 23 0.00054 0.39 11.7 0.2 1 23 215 237 215 238 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF585A-202 - 714 7.1e-70 225.6 139.8 7 23 3.8e-06 0.0027 18.4 0.7 1 23 243 265 243 266 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF585A-202 - 714 7.1e-70 225.6 139.8 8 23 0.19 1.4e+02 3.8 0.0 6 21 273 291 271 294 0.80 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF585A-202 - 714 7.1e-70 225.6 139.8 9 23 0.00042 0.3 12.0 0.1 2 23 300 321 299 322 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF585A-202 - 714 7.1e-70 225.6 139.8 10 23 2.3e-05 0.016 16.0 0.2 1 23 327 349 327 350 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF585A-202 - 714 7.1e-70 225.6 139.8 11 23 0.016 12 7.1 0.1 1 23 355 377 355 378 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF585A-202 - 714 7.1e-70 225.6 139.8 12 23 9.9e-05 0.071 14.0 5.3 1 23 383 405 383 406 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF585A-202 - 714 7.1e-70 225.6 139.8 13 23 1e-05 0.0075 17.0 0.6 1 23 411 433 411 434 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF585A-202 - 714 7.1e-70 225.6 139.8 14 23 3e-05 0.022 15.6 0.3 1 23 439 461 439 462 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF585A-202 - 714 7.1e-70 225.6 139.8 15 23 0.00019 0.14 13.1 1.0 1 23 467 489 467 490 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF585A-202 - 714 7.1e-70 225.6 139.8 16 23 0.00017 0.12 13.2 0.5 1 23 495 517 495 518 0.89 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF585A-202 - 714 7.1e-70 225.6 139.8 17 23 0.00013 0.095 13.6 0.3 1 23 523 545 523 546 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF585A-202 - 714 7.1e-70 225.6 139.8 18 23 4.8e-06 0.0035 18.1 0.5 1 21 551 571 551 574 0.90 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF585A-202 - 714 7.1e-70 225.6 139.8 19 23 1.2e-05 0.0084 16.9 0.4 1 23 579 601 579 602 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF585A-202 - 714 7.1e-70 225.6 139.8 20 23 1.1e-05 0.0082 16.9 1.1 1 23 607 629 607 630 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF585A-202 - 714 7.1e-70 225.6 139.8 21 23 3.7e-06 0.0027 18.4 0.8 1 23 635 657 635 658 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF585A-202 - 714 7.1e-70 225.6 139.8 22 23 4.5e-05 0.033 15.0 0.3 1 23 663 685 663 686 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF585A-202 - 714 7.1e-70 225.6 139.8 23 23 0.00012 0.084 13.8 0.3 1 23 691 713 691 714 0.94 C2H2-type zinc finger Zn-ribbon_8 PF09723.10 40 ZNF585A-202 - 714 2.2e-24 85.3 92.0 1 19 0.34 2.5e+02 1.9 0.4 6 15 103 112 74 116 0.72 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF585A-202 - 714 2.2e-24 85.3 92.0 2 19 0.015 10 6.3 3.1 6 34 103 138 102 139 0.83 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF585A-202 - 714 2.2e-24 85.3 92.0 3 19 0.0023 1.6 8.9 4.5 6 34 131 166 130 167 0.86 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF585A-202 - 714 2.2e-24 85.3 92.0 4 19 0.0019 1.3 9.2 3.9 6 35 159 195 158 198 0.83 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF585A-202 - 714 2.2e-24 85.3 92.0 5 19 0.0005 0.36 11.0 0.7 7 34 188 222 186 228 0.86 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF585A-202 - 714 2.2e-24 85.3 92.0 6 19 0.015 11 6.2 1.0 6 17 243 260 242 278 0.71 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF585A-202 - 714 2.2e-24 85.3 92.0 7 19 0.041 29 4.9 0.3 6 35 271 307 269 312 0.65 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF585A-202 - 714 2.2e-24 85.3 92.0 8 19 0.00056 0.4 10.8 2.9 8 35 301 335 297 338 0.90 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF585A-202 - 714 2.2e-24 85.3 92.0 9 19 2e-05 0.014 15.5 0.4 6 34 327 362 325 368 0.92 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF585A-202 - 714 2.2e-24 85.3 92.0 10 19 0.00097 0.69 10.1 0.8 7 35 384 419 383 424 0.85 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF585A-202 - 714 2.2e-24 85.3 92.0 11 19 7.2e-05 0.052 13.7 0.8 6 37 411 449 410 452 0.87 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF585A-202 - 714 2.2e-24 85.3 92.0 12 19 3.7e-05 0.027 14.6 1.6 6 36 439 476 438 480 0.89 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF585A-202 - 714 2.2e-24 85.3 92.0 13 19 0.011 8.2 6.6 0.3 6 17 467 478 466 488 0.82 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF585A-202 - 714 2.2e-24 85.3 92.0 14 19 6e-07 0.00043 20.3 1.2 5 35 494 531 494 535 0.90 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF585A-202 - 714 2.2e-24 85.3 92.0 15 19 1.5e-05 0.011 15.9 2.4 6 34 551 586 550 589 0.93 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF585A-202 - 714 2.2e-24 85.3 92.0 16 19 1.8e-05 0.013 15.6 2.0 6 38 579 618 577 620 0.92 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF585A-202 - 714 2.2e-24 85.3 92.0 17 19 5.4e-06 0.0038 17.3 2.7 6 35 635 671 634 676 0.91 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF585A-202 - 714 2.2e-24 85.3 92.0 18 19 0.00041 0.29 11.3 1.8 6 38 663 703 661 705 0.87 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF585A-202 - 714 2.2e-24 85.3 92.0 19 19 0.29 2e+02 2.2 0.1 6 16 691 701 690 711 0.85 Zinc ribbon domain zf-C2H2_6 PF13912.6 27 ZNF585A-202 - 714 9.7e-16 57.3 144.8 1 22 0.16 1.1e+02 2.9 1.2 2 12 103 113 102 128 0.77 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF585A-202 - 714 9.7e-16 57.3 144.8 2 22 0.0016 1.2 9.3 1.3 2 11 131 140 131 154 0.79 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF585A-202 - 714 9.7e-16 57.3 144.8 3 22 0.00046 0.33 11.0 0.4 2 13 159 170 158 181 0.86 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF585A-202 - 714 9.7e-16 57.3 144.8 4 22 0.011 7.6 6.7 0.7 1 12 186 197 186 209 0.88 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF585A-202 - 714 9.7e-16 57.3 144.8 5 22 0.92 6.6e+02 0.5 0.9 2 22 215 235 214 239 0.72 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF585A-202 - 714 9.7e-16 57.3 144.8 6 22 0.0087 6.3 6.9 1.0 2 11 243 252 243 256 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF585A-202 - 714 9.7e-16 57.3 144.8 7 22 0.49 3.5e+02 1.3 0.1 2 22 271 291 271 291 0.92 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF585A-202 - 714 9.7e-16 57.3 144.8 8 22 0.0034 2.4 8.2 0.1 3 20 300 317 300 323 0.79 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF585A-202 - 714 9.7e-16 57.3 144.8 9 22 0.013 9.6 6.3 0.3 2 20 327 345 327 351 0.80 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF585A-202 - 714 9.7e-16 57.3 144.8 10 22 5.2 3.7e+03 -1.9 0.1 2 11 355 364 354 364 0.85 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF585A-202 - 714 9.7e-16 57.3 144.8 11 22 0.93 6.7e+02 0.5 4.6 2 22 383 403 383 407 0.82 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF585A-202 - 714 9.7e-16 57.3 144.8 12 22 0.00052 0.38 10.8 0.7 2 24 411 433 411 436 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF585A-202 - 714 9.7e-16 57.3 144.8 13 22 0.00088 0.63 10.1 0.2 2 24 439 461 438 464 0.87 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF585A-202 - 714 9.7e-16 57.3 144.8 14 22 0.0038 2.7 8.1 0.4 2 12 467 477 467 487 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF585A-202 - 714 9.7e-16 57.3 144.8 15 22 0.0016 1.2 9.2 0.7 2 12 495 505 494 506 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF585A-202 - 714 9.7e-16 57.3 144.8 16 22 0.029 21 5.3 0.2 2 11 523 532 523 543 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF585A-202 - 714 9.7e-16 57.3 144.8 17 22 0.0041 3 8.0 1.6 2 13 551 562 551 563 0.96 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF585A-202 - 714 9.7e-16 57.3 144.8 18 22 0.0014 1 9.5 1.2 2 24 579 601 579 604 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF585A-202 - 714 9.7e-16 57.3 144.8 19 22 7.6e-05 0.055 13.5 0.9 2 22 607 627 607 631 0.88 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF585A-202 - 714 9.7e-16 57.3 144.8 20 22 0.011 7.5 6.7 1.4 2 12 635 645 635 647 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF585A-202 - 714 9.7e-16 57.3 144.8 21 22 0.00064 0.46 10.5 0.5 2 24 663 685 663 687 0.95 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF585A-202 - 714 9.7e-16 57.3 144.8 22 22 0.13 93 3.2 0.2 2 11 691 700 691 701 0.93 C2H2-type zinc finger DZR PF12773.7 49 ZNF585A-202 - 714 4.7e-15 55.3 78.6 1 3 0.15 1.1e+02 3.0 14.7 1 41 189 255 95 258 0.83 Double zinc ribbon DZR PF12773.7 49 ZNF585A-202 - 714 4.7e-15 55.3 78.6 2 3 0.00061 0.44 10.6 3.1 11 45 297 357 289 372 0.61 Double zinc ribbon DZR PF12773.7 49 ZNF585A-202 - 714 4.7e-15 55.3 78.6 3 3 0.4 2.8e+02 1.6 17.7 1 49 581 669 541 706 0.81 Double zinc ribbon zf_UBZ PF18439.1 32 ZNF585A-202 - 714 6.1e-11 41.7 84.3 1 21 0.11 79 3.0 0.1 3 13 103 113 101 122 0.80 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF585A-202 - 714 6.1e-11 41.7 84.3 2 21 0.1 74 3.1 0.3 3 12 131 140 129 143 0.89 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF585A-202 - 714 6.1e-11 41.7 84.3 3 21 0.02 14 5.4 0.1 3 13 159 169 157 178 0.79 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF585A-202 - 714 6.1e-11 41.7 84.3 4 21 0.19 1.3e+02 2.2 0.2 3 13 187 197 185 206 0.81 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF585A-202 - 714 6.1e-11 41.7 84.3 5 21 0.18 1.3e+02 2.3 0.1 2 12 214 224 213 233 0.85 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF585A-202 - 714 6.1e-11 41.7 84.3 6 21 0.0048 3.4 7.3 0.2 3 21 243 262 241 262 0.85 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF585A-202 - 714 6.1e-11 41.7 84.3 7 21 0.25 1.8e+02 1.8 0.1 4 12 300 308 297 314 0.86 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF585A-202 - 714 6.1e-11 41.7 84.3 8 21 0.019 13 5.4 0.1 3 14 327 338 325 346 0.78 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF585A-202 - 714 6.1e-11 41.7 84.3 9 21 0.52 3.7e+02 0.8 0.0 2 11 354 363 353 373 0.83 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF585A-202 - 714 6.1e-11 41.7 84.3 10 21 0.87 6.2e+02 0.1 0.1 4 14 384 394 382 401 0.80 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF585A-202 - 714 6.1e-11 41.7 84.3 11 21 0.19 1.4e+02 2.2 0.1 3 13 411 421 409 430 0.78 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF585A-202 - 714 6.1e-11 41.7 84.3 12 21 0.0011 0.75 9.4 0.1 2 21 438 458 437 458 0.86 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF585A-202 - 714 6.1e-11 41.7 84.3 13 21 0.4 2.9e+02 1.2 0.1 3 13 467 477 465 482 0.84 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF585A-202 - 714 6.1e-11 41.7 84.3 14 21 0.051 36 4.1 0.2 2 13 494 505 493 510 0.85 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF585A-202 - 714 6.1e-11 41.7 84.3 15 21 0.058 41 3.9 0.1 3 12 523 532 521 542 0.78 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF585A-202 - 714 6.1e-11 41.7 84.3 16 21 0.0041 2.9 7.6 0.1 3 18 551 567 549 570 0.78 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF585A-202 - 714 6.1e-11 41.7 84.3 17 21 0.0062 4.4 7.0 0.1 3 13 579 589 577 598 0.82 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF585A-202 - 714 6.1e-11 41.7 84.3 18 21 0.0021 1.5 8.4 0.4 3 20 607 625 605 626 0.82 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF585A-202 - 714 6.1e-11 41.7 84.3 19 21 0.0027 1.9 8.1 0.2 3 21 635 654 633 654 0.85 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF585A-202 - 714 6.1e-11 41.7 84.3 20 21 0.0056 4 7.1 0.1 3 15 663 675 661 682 0.76 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF585A-202 - 714 6.1e-11 41.7 84.3 21 21 1 7.2e+02 -0.1 0.2 3 12 691 700 689 704 0.85 Ubiquitin-Binding Zinc Finger zf-C2H2_jaz PF12171.8 27 ZNF585A-202 - 714 1.3e-10 41.2 103.2 1 22 4.8 3.5e+03 -1.5 0.1 9 22 82 95 81 95 0.83 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF585A-202 - 714 1.3e-10 41.2 103.2 2 22 0.93 6.7e+02 0.8 0.2 3 11 104 112 103 129 0.83 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF585A-202 - 714 1.3e-10 41.2 103.2 3 22 0.57 4.1e+02 1.4 0.3 2 11 131 140 130 150 0.90 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF585A-202 - 714 1.3e-10 41.2 103.2 4 22 0.3 2.1e+02 2.3 0.2 2 22 159 179 158 179 0.84 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF585A-202 - 714 1.3e-10 41.2 103.2 5 22 0.11 82 3.7 1.4 2 22 187 207 186 207 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF585A-202 - 714 1.3e-10 41.2 103.2 6 22 4.9 3.5e+03 -1.5 0.2 2 8 215 221 214 234 0.78 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF585A-202 - 714 1.3e-10 41.2 103.2 7 22 2.9e-05 0.021 15.1 0.1 2 22 243 263 242 263 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF585A-202 - 714 1.3e-10 41.2 103.2 8 22 0.36 2.6e+02 2.1 0.1 9 22 278 291 277 291 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF585A-202 - 714 1.3e-10 41.2 103.2 9 22 2.1 1.5e+03 -0.4 0.1 3 11 300 308 298 318 0.87 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF585A-202 - 714 1.3e-10 41.2 103.2 10 22 0.28 2e+02 2.4 0.0 2 22 327 347 326 347 0.90 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF585A-202 - 714 1.3e-10 41.2 103.2 11 22 0.0024 1.7 9.0 0.4 2 22 383 403 382 403 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF585A-202 - 714 1.3e-10 41.2 103.2 12 22 0.027 19 5.7 0.5 2 24 411 433 410 433 0.90 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF585A-202 - 714 1.3e-10 41.2 103.2 13 22 4.5 3.2e+03 -1.4 0.1 2 21 439 458 438 459 0.83 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF585A-202 - 714 1.3e-10 41.2 103.2 14 22 0.92 6.6e+02 0.8 0.5 2 20 467 485 466 487 0.74 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF585A-202 - 714 1.3e-10 41.2 103.2 15 22 0.067 48 4.4 1.3 1 21 494 514 494 515 0.83 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF585A-202 - 714 1.3e-10 41.2 103.2 16 22 0.0048 3.4 8.1 0.0 2 22 523 543 522 543 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF585A-202 - 714 1.3e-10 41.2 103.2 17 22 0.0034 2.4 8.5 0.1 2 20 551 569 550 570 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF585A-202 - 714 1.3e-10 41.2 103.2 18 22 0.0017 1.2 9.5 0.2 2 24 579 601 578 601 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF585A-202 - 714 1.3e-10 41.2 103.2 19 22 0.046 33 4.9 0.1 2 20 607 625 606 625 0.84 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF585A-202 - 714 1.3e-10 41.2 103.2 20 22 0.00087 0.63 10.4 0.2 2 22 635 655 634 655 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF585A-202 - 714 1.3e-10 41.2 103.2 21 22 0.0044 3.1 8.2 0.2 2 24 663 685 662 685 0.91 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF585A-202 - 714 1.3e-10 41.2 103.2 22 22 0.0037 2.6 8.4 0.1 2 24 691 713 690 714 0.94 Zinc-finger double-stranded RNA-binding DUF3268 PF11672.8 118 ZNF585A-202 - 714 2.3e-10 40.8 75.0 1 13 0.37 2.6e+02 1.9 0.1 21 40 93 113 68 127 0.71 zinc-finger-containing domain DUF3268 PF11672.8 118 ZNF585A-202 - 714 2.3e-10 40.8 75.0 2 13 0.01 7.5 6.9 0.3 2 37 130 165 129 177 0.85 zinc-finger-containing domain DUF3268 PF11672.8 118 ZNF585A-202 - 714 2.3e-10 40.8 75.0 3 13 0.0017 1.2 9.5 0.5 3 38 187 222 185 235 0.89 zinc-finger-containing domain DUF3268 PF11672.8 118 ZNF585A-202 - 714 2.3e-10 40.8 75.0 4 13 0.04 29 5.0 0.3 2 36 242 276 241 291 0.86 zinc-finger-containing domain DUF3268 PF11672.8 118 ZNF585A-202 - 714 2.3e-10 40.8 75.0 5 13 0.00049 0.35 11.2 0.8 2 38 298 334 297 341 0.90 zinc-finger-containing domain DUF3268 PF11672.8 118 ZNF585A-202 - 714 2.3e-10 40.8 75.0 6 13 0.0011 0.78 10.1 1.1 2 37 326 361 325 370 0.90 zinc-finger-containing domain DUF3268 PF11672.8 118 ZNF585A-202 - 714 2.3e-10 40.8 75.0 7 13 0.00017 0.12 12.7 0.8 2 38 382 418 381 425 0.90 zinc-finger-containing domain DUF3268 PF11672.8 118 ZNF585A-202 - 714 2.3e-10 40.8 75.0 8 13 0.00087 0.62 10.4 1.7 2 38 410 446 409 454 0.88 zinc-finger-containing domain DUF3268 PF11672.8 118 ZNF585A-202 - 714 2.3e-10 40.8 75.0 9 13 0.0017 1.2 9.4 1.8 2 38 466 502 465 509 0.91 zinc-finger-containing domain DUF3268 PF11672.8 118 ZNF585A-202 - 714 2.3e-10 40.8 75.0 10 13 0.0043 3.1 8.2 1.4 3 38 495 531 493 544 0.86 zinc-finger-containing domain DUF3268 PF11672.8 118 ZNF585A-202 - 714 2.3e-10 40.8 75.0 11 13 0.0056 4 7.8 0.7 2 39 522 559 521 570 0.78 zinc-finger-containing domain DUF3268 PF11672.8 118 ZNF585A-202 - 714 2.3e-10 40.8 75.0 12 13 0.003 2.2 8.7 1.0 2 41 578 617 577 626 0.88 zinc-finger-containing domain DUF3268 PF11672.8 118 ZNF585A-202 - 714 2.3e-10 40.8 75.0 13 13 0.00047 0.34 11.3 1.0 2 38 634 670 633 687 0.88 zinc-finger-containing domain zinc_ribbon_15 PF17032.5 86 ZNF585A-202 - 714 2.7e-09 37.7 88.1 1 13 0.81 5.8e+02 1.3 0.3 37 78 74 115 42 118 0.68 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF585A-202 - 714 2.7e-09 37.7 88.1 2 13 0.028 20 6.0 0.7 33 74 98 139 90 147 0.85 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF585A-202 - 714 2.7e-09 37.7 88.1 3 13 0.00076 0.54 11.0 1.1 30 78 151 199 139 202 0.83 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF585A-202 - 714 2.7e-09 37.7 88.1 4 13 0.0087 6.2 7.6 0.7 31 77 208 254 202 258 0.84 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF585A-202 - 714 2.7e-09 37.7 88.1 5 13 0.14 1e+02 3.8 3.7 35 75 240 308 230 314 0.61 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF585A-202 - 714 2.7e-09 37.7 88.1 6 13 0.019 13 6.6 3.0 31 75 320 364 313 398 0.82 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF585A-202 - 714 2.7e-09 37.7 88.1 7 13 0.0016 1.2 10.0 5.8 32 77 405 450 369 454 0.83 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF585A-202 - 714 2.7e-09 37.7 88.1 8 13 0.00071 0.51 11.1 2.8 30 78 459 507 454 510 0.83 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF585A-202 - 714 2.7e-09 37.7 88.1 9 13 0.0057 4.1 8.2 0.9 30 78 515 563 509 566 0.80 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF585A-202 - 714 2.7e-09 37.7 88.1 10 13 0.00036 0.26 12.1 1.4 34 78 575 619 568 623 0.85 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF585A-202 - 714 2.7e-09 37.7 88.1 11 13 0.0024 1.7 9.4 2.8 34 78 603 647 596 650 0.85 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF585A-202 - 714 2.7e-09 37.7 88.1 12 13 0.0011 0.8 10.5 1.3 30 78 627 675 621 679 0.84 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF585A-202 - 714 2.7e-09 37.7 88.1 13 13 0.0048 3.5 8.5 0.7 33 78 658 703 652 708 0.83 zinc-ribbon family C1_4 PF07975.12 55 ZNF585A-202 - 714 3.3e-09 36.8 93.2 1 17 1.7 1.2e+03 -0.2 0.3 22 42 71 91 52 110 0.51 TFIIH C1-like domain C1_4 PF07975.12 55 ZNF585A-202 - 714 3.3e-09 36.8 93.2 2 17 0.27 1.9e+02 2.4 0.6 14 48 85 125 73 128 0.65 TFIIH C1-like domain C1_4 PF07975.12 55 ZNF585A-202 - 714 3.3e-09 36.8 93.2 3 17 0.0082 5.9 7.2 2.4 2 49 105 154 104 156 0.82 TFIIH C1-like domain C1_4 PF07975.12 55 ZNF585A-202 - 714 3.3e-09 36.8 93.2 4 17 7.7e-06 0.0055 16.9 2.6 2 49 133 182 132 184 0.86 TFIIH C1-like domain C1_4 PF07975.12 55 ZNF585A-202 - 714 3.3e-09 36.8 93.2 5 17 0.012 8.8 6.7 2.2 1 48 188 237 188 240 0.81 TFIIH C1-like domain C1_4 PF07975.12 55 ZNF585A-202 - 714 3.3e-09 36.8 93.2 6 17 0.0021 1.5 9.1 1.4 2 49 217 266 216 269 0.86 TFIIH C1-like domain C1_4 PF07975.12 55 ZNF585A-202 - 714 3.3e-09 36.8 93.2 7 17 0.06 43 4.4 0.1 20 49 293 322 273 324 0.76 TFIIH C1-like domain C1_4 PF07975.12 55 ZNF585A-202 - 714 3.3e-09 36.8 93.2 8 17 0.02 14 6.0 1.2 2 49 301 350 300 352 0.77 TFIIH C1-like domain C1_4 PF07975.12 55 ZNF585A-202 - 714 3.3e-09 36.8 93.2 9 17 0.016 11 6.3 1.5 1 49 328 378 328 381 0.86 TFIIH C1-like domain C1_4 PF07975.12 55 ZNF585A-202 - 714 3.3e-09 36.8 93.2 10 17 0.073 52 4.2 3.1 2 49 357 406 356 408 0.86 TFIIH C1-like domain C1_4 PF07975.12 55 ZNF585A-202 - 714 3.3e-09 36.8 93.2 11 17 0.00057 0.41 10.9 1.8 2 49 413 462 412 464 0.86 TFIIH C1-like domain C1_4 PF07975.12 55 ZNF585A-202 - 714 3.3e-09 36.8 93.2 12 17 0.0037 2.7 8.3 3.0 2 49 441 490 441 492 0.87 TFIIH C1-like domain C1_4 PF07975.12 55 ZNF585A-202 - 714 3.3e-09 36.8 93.2 13 17 0.0059 4.2 7.7 4.6 1 49 468 518 468 521 0.83 TFIIH C1-like domain C1_4 PF07975.12 55 ZNF585A-202 - 714 3.3e-09 36.8 93.2 14 17 0.0034 2.4 8.4 0.8 2 49 525 574 524 576 0.86 TFIIH C1-like domain C1_4 PF07975.12 55 ZNF585A-202 - 714 3.3e-09 36.8 93.2 15 17 0.006 4.3 7.7 1.1 2 49 581 630 580 632 0.80 TFIIH C1-like domain C1_4 PF07975.12 55 ZNF585A-202 - 714 3.3e-09 36.8 93.2 16 17 0.011 8.1 6.8 2.7 2 49 609 658 608 661 0.85 TFIIH C1-like domain C1_4 PF07975.12 55 ZNF585A-202 - 714 3.3e-09 36.8 93.2 17 17 0.025 18 5.7 1.3 2 47 665 712 664 714 0.69 TFIIH C1-like domain XPA_N PF01286.18 32 ZNF585A-202 - 714 1.6e-08 34.4 76.4 1 21 0.034 24 5.1 0.1 3 12 104 113 103 114 0.88 XPA protein N-terminal XPA_N PF01286.18 32 ZNF585A-202 - 714 1.6e-08 34.4 76.4 2 21 0.027 19 5.4 0.3 3 11 132 140 130 149 0.74 XPA protein N-terminal XPA_N PF01286.18 32 ZNF585A-202 - 714 1.6e-08 34.4 76.4 3 21 0.36 2.6e+02 1.8 0.1 3 11 160 168 159 170 0.89 XPA protein N-terminal XPA_N PF01286.18 32 ZNF585A-202 - 714 1.6e-08 34.4 76.4 4 21 0.071 51 4.0 0.4 3 12 188 197 186 200 0.88 XPA protein N-terminal XPA_N PF01286.18 32 ZNF585A-202 - 714 1.6e-08 34.4 76.4 5 21 0.079 57 3.9 0.1 3 12 216 225 215 226 0.87 XPA protein N-terminal XPA_N PF01286.18 32 ZNF585A-202 - 714 1.6e-08 34.4 76.4 6 21 0.3 2.2e+02 2.0 0.1 3 12 244 253 242 260 0.85 XPA protein N-terminal XPA_N PF01286.18 32 ZNF585A-202 - 714 1.6e-08 34.4 76.4 7 21 0.041 29 4.8 0.1 3 12 300 309 298 310 0.88 XPA protein N-terminal XPA_N PF01286.18 32 ZNF585A-202 - 714 1.6e-08 34.4 76.4 8 21 0.076 54 3.9 0.2 3 12 328 337 326 341 0.89 XPA protein N-terminal XPA_N PF01286.18 32 ZNF585A-202 - 714 1.6e-08 34.4 76.4 9 21 1.6 1.2e+03 -0.3 0.0 3 11 356 364 355 366 0.83 XPA protein N-terminal XPA_N PF01286.18 32 ZNF585A-202 - 714 1.6e-08 34.4 76.4 10 21 0.42 3e+02 1.6 0.1 3 12 384 393 382 398 0.85 XPA protein N-terminal XPA_N PF01286.18 32 ZNF585A-202 - 714 1.6e-08 34.4 76.4 11 21 0.075 53 4.0 0.0 3 12 412 421 410 429 0.85 XPA protein N-terminal XPA_N PF01286.18 32 ZNF585A-202 - 714 1.6e-08 34.4 76.4 12 21 0.11 77 3.5 0.0 3 12 440 449 439 456 0.90 XPA protein N-terminal XPA_N PF01286.18 32 ZNF585A-202 - 714 1.6e-08 34.4 76.4 13 21 0.2 1.5e+02 2.6 0.1 3 12 468 477 466 482 0.88 XPA protein N-terminal XPA_N PF01286.18 32 ZNF585A-202 - 714 1.6e-08 34.4 76.4 14 21 0.024 17 5.5 0.2 3 12 496 505 494 510 0.88 XPA protein N-terminal XPA_N PF01286.18 32 ZNF585A-202 - 714 1.6e-08 34.4 76.4 15 21 0.17 1.2e+02 2.8 0.0 3 11 524 532 522 534 0.88 XPA protein N-terminal XPA_N PF01286.18 32 ZNF585A-202 - 714 1.6e-08 34.4 76.4 16 21 0.064 46 4.2 0.2 3 12 552 561 550 569 0.79 XPA protein N-terminal XPA_N PF01286.18 32 ZNF585A-202 - 714 1.6e-08 34.4 76.4 17 21 0.038 27 4.9 0.0 3 12 580 589 578 597 0.84 XPA protein N-terminal XPA_N PF01286.18 32 ZNF585A-202 - 714 1.6e-08 34.4 76.4 18 21 0.031 22 5.2 0.1 3 12 608 617 606 626 0.84 XPA protein N-terminal XPA_N PF01286.18 32 ZNF585A-202 - 714 1.6e-08 34.4 76.4 19 21 0.087 63 3.7 0.2 3 12 636 645 634 652 0.85 XPA protein N-terminal XPA_N PF01286.18 32 ZNF585A-202 - 714 1.6e-08 34.4 76.4 20 21 0.011 7.9 6.6 0.0 3 13 664 674 662 678 0.91 XPA protein N-terminal XPA_N PF01286.18 32 ZNF585A-202 - 714 1.6e-08 34.4 76.4 21 21 4.7 3.4e+03 -1.8 0.1 3 11 692 700 691 702 0.83 XPA protein N-terminal zf-trcl PF13451.6 48 ZNF585A-202 - 714 1.9e-08 34.0 82.4 1 20 0.14 1e+02 2.9 0.1 3 15 101 113 100 124 0.91 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF585A-202 - 714 1.9e-08 34.0 82.4 2 20 0.027 19 5.2 0.2 2 14 128 140 127 144 0.88 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF585A-202 - 714 1.9e-08 34.0 82.4 3 20 0.4 2.9e+02 1.5 0.1 4 16 158 170 156 173 0.80 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF585A-202 - 714 1.9e-08 34.0 82.4 4 20 0.088 63 3.6 0.4 4 15 186 197 184 200 0.85 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF585A-202 - 714 1.9e-08 34.0 82.4 5 20 0.29 2.1e+02 1.9 0.1 4 15 214 225 212 227 0.88 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF585A-202 - 714 1.9e-08 34.0 82.4 6 20 0.053 38 4.3 0.0 3 15 241 253 239 261 0.86 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF585A-202 - 714 1.9e-08 34.0 82.4 7 20 0.024 18 5.4 0.1 3 16 297 310 295 313 0.84 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF585A-202 - 714 1.9e-08 34.0 82.4 8 20 0.026 19 5.3 0.1 3 15 325 337 323 340 0.89 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF585A-202 - 714 1.9e-08 34.0 82.4 9 20 0.46 3.3e+02 1.3 0.1 3 15 353 365 352 369 0.85 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF585A-202 - 714 1.9e-08 34.0 82.4 10 20 0.05 36 4.4 1.6 4 43 382 420 379 425 0.61 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF585A-202 - 714 1.9e-08 34.0 82.4 11 20 0.087 62 3.6 0.1 3 15 437 449 435 451 0.89 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF585A-202 - 714 1.9e-08 34.0 82.4 12 20 0.19 1.4e+02 2.5 0.1 3 15 465 477 463 480 0.87 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF585A-202 - 714 1.9e-08 34.0 82.4 13 20 0.36 2.6e+02 1.6 0.3 4 14 494 504 492 505 0.85 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF585A-202 - 714 1.9e-08 34.0 82.4 14 20 0.015 11 6.0 0.1 3 15 521 533 519 536 0.91 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF585A-202 - 714 1.9e-08 34.0 82.4 15 20 0.016 12 5.9 0.1 3 15 549 561 547 565 0.88 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF585A-202 - 714 1.9e-08 34.0 82.4 16 20 0.045 32 4.5 0.1 3 14 577 588 575 589 0.89 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF585A-202 - 714 1.9e-08 34.0 82.4 17 20 0.07 50 3.9 0.1 3 14 605 616 603 617 0.90 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF585A-202 - 714 1.9e-08 34.0 82.4 18 20 0.016 11 6.0 0.1 3 15 633 645 631 652 0.88 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF585A-202 - 714 1.9e-08 34.0 82.4 19 20 0.022 16 5.5 0.1 3 15 661 673 659 674 0.90 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF585A-202 - 714 1.9e-08 34.0 82.4 20 20 0.065 47 4.0 0.1 2 15 688 701 687 710 0.91 Probable zinc-ribbon domain ADK_lid PF05191.14 36 ZNF585A-202 - 714 2.7e-07 30.5 61.4 1 11 0.0087 6.2 6.9 0.5 3 33 104 142 103 143 0.82 Adenylate kinase, active site lid ADK_lid PF05191.14 36 ZNF585A-202 - 714 2.7e-07 30.5 61.4 2 11 0.19 1.4e+02 2.6 2.1 4 33 189 226 159 228 0.54 Adenylate kinase, active site lid ADK_lid PF05191.14 36 ZNF585A-202 - 714 2.7e-07 30.5 61.4 3 11 0.039 28 4.8 1.9 4 34 245 311 243 368 0.60 Adenylate kinase, active site lid ADK_lid PF05191.14 36 ZNF585A-202 - 714 2.7e-07 30.5 61.4 4 11 0.12 86 3.2 0.2 3 29 356 390 355 396 0.73 Adenylate kinase, active site lid ADK_lid PF05191.14 36 ZNF585A-202 - 714 2.7e-07 30.5 61.4 5 11 0.025 18 5.4 0.7 4 35 385 424 383 424 0.79 Adenylate kinase, active site lid ADK_lid PF05191.14 36 ZNF585A-202 - 714 2.7e-07 30.5 61.4 6 11 7.6e-06 0.0055 16.7 0.3 3 36 412 453 411 453 0.84 Adenylate kinase, active site lid ADK_lid PF05191.14 36 ZNF585A-202 - 714 2.7e-07 30.5 61.4 7 11 2.9 2.1e+03 -1.2 0.0 24 33 469 478 465 482 0.71 Adenylate kinase, active site lid ADK_lid PF05191.14 36 ZNF585A-202 - 714 2.7e-07 30.5 61.4 8 11 0.0095 6.8 6.8 0.7 4 33 497 534 495 536 0.74 Adenylate kinase, active site lid ADK_lid PF05191.14 36 ZNF585A-202 - 714 2.7e-07 30.5 61.4 9 11 0.0074 5.3 7.1 3.8 3 33 580 618 551 620 0.82 Adenylate kinase, active site lid ADK_lid PF05191.14 36 ZNF585A-202 - 714 2.7e-07 30.5 61.4 10 11 0.051 36 4.4 1.4 3 31 608 644 607 648 0.70 Adenylate kinase, active site lid ADK_lid PF05191.14 36 ZNF585A-202 - 714 2.7e-07 30.5 61.4 11 11 0.046 33 4.6 5.1 22 35 663 676 635 704 0.51 Adenylate kinase, active site lid # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF585A-202.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF585A-202.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF585A-202.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF585A-202.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF585A-202.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:10:09 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZNF585A-203 - 714 4.9e-151 485.1 125.3 1 23 3.8 2.7e+03 -0.9 0.1 11 17 71 77 70 79 0.85 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF585A-203 - 714 4.9e-151 485.1 125.3 2 23 6.7e-05 0.048 14.1 0.0 3 25 91 113 89 114 0.78 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF585A-203 - 714 4.9e-151 485.1 125.3 3 23 5.1e-07 0.00036 20.8 2.1 5 24 121 140 119 142 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF585A-203 - 714 4.9e-151 485.1 125.3 4 23 1.4e-10 9.9e-08 32.1 0.4 2 25 146 169 145 170 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF585A-203 - 714 4.9e-151 485.1 125.3 5 23 1.5e-08 1.1e-05 25.7 0.8 2 25 174 197 173 198 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF585A-203 - 714 4.9e-151 485.1 125.3 6 23 6e-06 0.0043 17.4 0.0 2 24 202 224 201 226 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF585A-203 - 714 4.9e-151 485.1 125.3 7 23 2.7e-11 2e-08 34.3 0.4 1 24 229 252 229 254 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF585A-203 - 714 4.9e-151 485.1 125.3 8 23 3.6e-05 0.026 14.9 0.1 2 26 258 282 257 282 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF585A-203 - 714 4.9e-151 485.1 125.3 9 23 0.023 16 6.1 0.2 1 25 285 309 285 310 0.84 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF585A-203 - 714 4.9e-151 485.1 125.3 10 23 3.9e-11 2.8e-08 33.8 0.1 5 25 317 337 313 338 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF585A-203 - 714 4.9e-151 485.1 125.3 11 23 1.8e-06 0.0013 19.1 0.0 1 24 341 364 341 366 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF585A-203 - 714 4.9e-151 485.1 125.3 12 23 4.8e-08 3.4e-05 24.1 1.9 1 26 369 394 369 394 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF585A-203 - 714 4.9e-151 485.1 125.3 13 23 2.6e-09 1.9e-06 28.0 2.2 5 26 401 422 398 422 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF585A-203 - 714 4.9e-151 485.1 125.3 14 23 1.8e-08 1.3e-05 25.4 0.5 1 25 425 449 425 450 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF585A-203 - 714 4.9e-151 485.1 125.3 15 23 5.4e-11 3.9e-08 33.4 0.2 2 25 454 477 453 478 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF585A-203 - 714 4.9e-151 485.1 125.3 16 23 1.7e-09 1.2e-06 28.6 1.2 1 25 481 505 481 506 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF585A-203 - 714 4.9e-151 485.1 125.3 17 23 1e-08 7.4e-06 26.2 0.1 5 24 513 532 510 534 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF585A-203 - 714 4.9e-151 485.1 125.3 18 23 2.9e-11 2.1e-08 34.2 0.5 4 26 540 562 537 562 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF585A-203 - 714 4.9e-151 485.1 125.3 19 23 1.4e-07 0.0001 22.5 0.2 5 25 569 589 566 589 0.89 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF585A-203 - 714 4.9e-151 485.1 125.3 20 23 1.6e-10 1.1e-07 31.9 1.0 1 25 593 617 593 618 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF585A-203 - 714 4.9e-151 485.1 125.3 21 23 3.3e-10 2.4e-07 30.9 1.4 3 26 623 646 621 646 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF585A-203 - 714 4.9e-151 485.1 125.3 22 23 3e-10 2.2e-07 31.0 0.1 2 25 650 673 649 674 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF585A-203 - 714 4.9e-151 485.1 125.3 23 23 1.1e-09 8.2e-07 29.2 0.2 1 25 677 701 677 702 0.96 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZNF585A-203 - 714 4.5e-130 417.4 144.1 1 23 0.0094 6.7 7.4 0.0 8 21 82 95 76 96 0.90 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF585A-203 - 714 4.5e-130 417.4 144.1 2 23 4e-05 0.028 14.9 0.1 1 23 103 125 103 125 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF585A-203 - 714 4.5e-130 417.4 144.1 3 23 5e-08 3.6e-05 24.0 1.7 1 23 131 153 131 153 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF585A-203 - 714 4.5e-130 417.4 144.1 4 23 1.4e-06 0.001 19.4 0.2 1 23 159 181 159 181 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF585A-203 - 714 4.5e-130 417.4 144.1 5 23 3.8e-08 2.7e-05 24.3 2.0 1 23 187 209 187 209 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF585A-203 - 714 4.5e-130 417.4 144.1 6 23 2.8e-05 0.02 15.3 0.2 1 23 215 237 215 237 0.93 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF585A-203 - 714 4.5e-130 417.4 144.1 7 23 2e-09 1.4e-06 28.4 0.6 1 23 243 265 243 265 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF585A-203 - 714 4.5e-130 417.4 144.1 8 23 0.0021 1.5 9.4 0.0 6 21 273 291 270 292 0.80 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF585A-203 - 714 4.5e-130 417.4 144.1 9 23 1.8e-07 0.00013 22.2 0.1 3 23 301 321 300 321 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF585A-203 - 714 4.5e-130 417.4 144.1 10 23 8e-10 5.7e-07 29.6 0.2 1 23 327 349 327 349 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF585A-203 - 714 4.5e-130 417.4 144.1 11 23 1e-05 0.0074 16.7 0.1 1 23 355 377 355 377 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF585A-203 - 714 4.5e-130 417.4 144.1 12 23 6.8e-06 0.0049 17.3 6.5 1 23 383 405 383 405 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF585A-203 - 714 4.5e-130 417.4 144.1 13 23 4.2e-09 3e-06 27.4 1.4 1 23 411 433 411 433 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF585A-203 - 714 4.5e-130 417.4 144.1 14 23 1.2e-08 8.3e-06 26.0 0.4 1 23 439 461 439 461 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF585A-203 - 714 4.5e-130 417.4 144.1 15 23 7.2e-09 5.2e-06 26.6 1.5 1 23 467 489 467 489 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF585A-203 - 714 4.5e-130 417.4 144.1 16 23 2.9e-07 0.00021 21.6 0.4 1 23 495 517 495 517 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF585A-203 - 714 4.5e-130 417.4 144.1 17 23 8.7e-09 6.2e-06 26.4 0.4 1 23 523 545 523 545 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF585A-203 - 714 4.5e-130 417.4 144.1 18 23 3.9e-08 2.8e-05 24.3 0.4 1 20 551 570 551 573 0.94 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF585A-203 - 714 4.5e-130 417.4 144.1 19 23 1.7e-08 1.2e-05 25.5 0.3 1 23 579 601 579 601 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF585A-203 - 714 4.5e-130 417.4 144.1 20 23 3.1e-08 2.2e-05 24.6 1.7 1 23 607 629 607 629 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF585A-203 - 714 4.5e-130 417.4 144.1 21 23 3.7e-10 2.7e-07 30.7 0.9 1 23 635 657 635 657 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF585A-203 - 714 4.5e-130 417.4 144.1 22 23 4.1e-09 2.9e-06 27.4 0.4 1 23 663 685 663 685 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF585A-203 - 714 4.5e-130 417.4 144.1 23 23 1.8e-06 0.0013 19.1 0.3 1 23 691 713 691 713 0.98 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZNF585A-203 - 714 7.1e-70 225.6 139.8 1 23 0.68 4.9e+02 2.0 0.0 8 21 82 95 76 97 0.85 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF585A-203 - 714 7.1e-70 225.6 139.8 2 23 0.00037 0.27 12.2 0.1 1 23 103 125 103 126 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF585A-203 - 714 7.1e-70 225.6 139.8 3 23 1.8e-05 0.013 16.3 1.7 1 23 131 153 131 154 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF585A-203 - 714 7.1e-70 225.6 139.8 4 23 9.4e-06 0.0068 17.2 0.2 1 23 159 181 159 182 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF585A-203 - 714 7.1e-70 225.6 139.8 5 23 0.00011 0.077 13.9 1.4 1 23 187 209 187 210 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF585A-203 - 714 7.1e-70 225.6 139.8 6 23 0.00054 0.39 11.7 0.2 1 23 215 237 215 238 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF585A-203 - 714 7.1e-70 225.6 139.8 7 23 3.8e-06 0.0027 18.4 0.7 1 23 243 265 243 266 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF585A-203 - 714 7.1e-70 225.6 139.8 8 23 0.19 1.4e+02 3.8 0.0 6 21 273 291 271 294 0.80 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF585A-203 - 714 7.1e-70 225.6 139.8 9 23 0.00042 0.3 12.0 0.1 2 23 300 321 299 322 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF585A-203 - 714 7.1e-70 225.6 139.8 10 23 2.3e-05 0.016 16.0 0.2 1 23 327 349 327 350 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF585A-203 - 714 7.1e-70 225.6 139.8 11 23 0.016 12 7.1 0.1 1 23 355 377 355 378 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF585A-203 - 714 7.1e-70 225.6 139.8 12 23 9.9e-05 0.071 14.0 5.3 1 23 383 405 383 406 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF585A-203 - 714 7.1e-70 225.6 139.8 13 23 1e-05 0.0075 17.0 0.6 1 23 411 433 411 434 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF585A-203 - 714 7.1e-70 225.6 139.8 14 23 3e-05 0.022 15.6 0.3 1 23 439 461 439 462 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF585A-203 - 714 7.1e-70 225.6 139.8 15 23 0.00019 0.14 13.1 1.0 1 23 467 489 467 490 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF585A-203 - 714 7.1e-70 225.6 139.8 16 23 0.00017 0.12 13.2 0.5 1 23 495 517 495 518 0.89 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF585A-203 - 714 7.1e-70 225.6 139.8 17 23 0.00013 0.095 13.6 0.3 1 23 523 545 523 546 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF585A-203 - 714 7.1e-70 225.6 139.8 18 23 4.8e-06 0.0035 18.1 0.5 1 21 551 571 551 574 0.90 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF585A-203 - 714 7.1e-70 225.6 139.8 19 23 1.2e-05 0.0084 16.9 0.4 1 23 579 601 579 602 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF585A-203 - 714 7.1e-70 225.6 139.8 20 23 1.1e-05 0.0082 16.9 1.1 1 23 607 629 607 630 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF585A-203 - 714 7.1e-70 225.6 139.8 21 23 3.7e-06 0.0027 18.4 0.8 1 23 635 657 635 658 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF585A-203 - 714 7.1e-70 225.6 139.8 22 23 4.5e-05 0.033 15.0 0.3 1 23 663 685 663 686 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF585A-203 - 714 7.1e-70 225.6 139.8 23 23 0.00012 0.084 13.8 0.3 1 23 691 713 691 714 0.94 C2H2-type zinc finger Zn-ribbon_8 PF09723.10 40 ZNF585A-203 - 714 2.2e-24 85.3 92.0 1 19 0.34 2.5e+02 1.9 0.4 6 15 103 112 74 116 0.72 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF585A-203 - 714 2.2e-24 85.3 92.0 2 19 0.015 10 6.3 3.1 6 34 103 138 102 139 0.83 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF585A-203 - 714 2.2e-24 85.3 92.0 3 19 0.0023 1.6 8.9 4.5 6 34 131 166 130 167 0.86 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF585A-203 - 714 2.2e-24 85.3 92.0 4 19 0.0019 1.3 9.2 3.9 6 35 159 195 158 198 0.83 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF585A-203 - 714 2.2e-24 85.3 92.0 5 19 0.0005 0.36 11.0 0.7 7 34 188 222 186 228 0.86 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF585A-203 - 714 2.2e-24 85.3 92.0 6 19 0.015 11 6.2 1.0 6 17 243 260 242 278 0.71 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF585A-203 - 714 2.2e-24 85.3 92.0 7 19 0.041 29 4.9 0.3 6 35 271 307 269 312 0.65 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF585A-203 - 714 2.2e-24 85.3 92.0 8 19 0.00056 0.4 10.8 2.9 8 35 301 335 297 338 0.90 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF585A-203 - 714 2.2e-24 85.3 92.0 9 19 2e-05 0.014 15.5 0.4 6 34 327 362 325 368 0.92 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF585A-203 - 714 2.2e-24 85.3 92.0 10 19 0.00097 0.69 10.1 0.8 7 35 384 419 383 424 0.85 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF585A-203 - 714 2.2e-24 85.3 92.0 11 19 7.2e-05 0.052 13.7 0.8 6 37 411 449 410 452 0.87 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF585A-203 - 714 2.2e-24 85.3 92.0 12 19 3.7e-05 0.027 14.6 1.6 6 36 439 476 438 480 0.89 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF585A-203 - 714 2.2e-24 85.3 92.0 13 19 0.011 8.2 6.6 0.3 6 17 467 478 466 488 0.82 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF585A-203 - 714 2.2e-24 85.3 92.0 14 19 6e-07 0.00043 20.3 1.2 5 35 494 531 494 535 0.90 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF585A-203 - 714 2.2e-24 85.3 92.0 15 19 1.5e-05 0.011 15.9 2.4 6 34 551 586 550 589 0.93 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF585A-203 - 714 2.2e-24 85.3 92.0 16 19 1.8e-05 0.013 15.6 2.0 6 38 579 618 577 620 0.92 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF585A-203 - 714 2.2e-24 85.3 92.0 17 19 5.4e-06 0.0038 17.3 2.7 6 35 635 671 634 676 0.91 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF585A-203 - 714 2.2e-24 85.3 92.0 18 19 0.00041 0.29 11.3 1.8 6 38 663 703 661 705 0.87 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF585A-203 - 714 2.2e-24 85.3 92.0 19 19 0.29 2e+02 2.2 0.1 6 16 691 701 690 711 0.85 Zinc ribbon domain zf-C2H2_6 PF13912.6 27 ZNF585A-203 - 714 9.7e-16 57.3 144.8 1 22 0.16 1.1e+02 2.9 1.2 2 12 103 113 102 128 0.77 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF585A-203 - 714 9.7e-16 57.3 144.8 2 22 0.0016 1.2 9.3 1.3 2 11 131 140 131 154 0.79 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF585A-203 - 714 9.7e-16 57.3 144.8 3 22 0.00046 0.33 11.0 0.4 2 13 159 170 158 181 0.86 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF585A-203 - 714 9.7e-16 57.3 144.8 4 22 0.011 7.6 6.7 0.7 1 12 186 197 186 209 0.88 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF585A-203 - 714 9.7e-16 57.3 144.8 5 22 0.92 6.6e+02 0.5 0.9 2 22 215 235 214 239 0.72 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF585A-203 - 714 9.7e-16 57.3 144.8 6 22 0.0087 6.3 6.9 1.0 2 11 243 252 243 256 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF585A-203 - 714 9.7e-16 57.3 144.8 7 22 0.49 3.5e+02 1.3 0.1 2 22 271 291 271 291 0.92 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF585A-203 - 714 9.7e-16 57.3 144.8 8 22 0.0034 2.4 8.2 0.1 3 20 300 317 300 323 0.79 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF585A-203 - 714 9.7e-16 57.3 144.8 9 22 0.013 9.6 6.3 0.3 2 20 327 345 327 351 0.80 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF585A-203 - 714 9.7e-16 57.3 144.8 10 22 5.2 3.7e+03 -1.9 0.1 2 11 355 364 354 364 0.85 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF585A-203 - 714 9.7e-16 57.3 144.8 11 22 0.93 6.7e+02 0.5 4.6 2 22 383 403 383 407 0.82 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF585A-203 - 714 9.7e-16 57.3 144.8 12 22 0.00052 0.38 10.8 0.7 2 24 411 433 411 436 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF585A-203 - 714 9.7e-16 57.3 144.8 13 22 0.00088 0.63 10.1 0.2 2 24 439 461 438 464 0.87 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF585A-203 - 714 9.7e-16 57.3 144.8 14 22 0.0038 2.7 8.1 0.4 2 12 467 477 467 487 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF585A-203 - 714 9.7e-16 57.3 144.8 15 22 0.0016 1.2 9.2 0.7 2 12 495 505 494 506 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF585A-203 - 714 9.7e-16 57.3 144.8 16 22 0.029 21 5.3 0.2 2 11 523 532 523 543 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF585A-203 - 714 9.7e-16 57.3 144.8 17 22 0.0041 3 8.0 1.6 2 13 551 562 551 563 0.96 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF585A-203 - 714 9.7e-16 57.3 144.8 18 22 0.0014 1 9.5 1.2 2 24 579 601 579 604 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF585A-203 - 714 9.7e-16 57.3 144.8 19 22 7.6e-05 0.055 13.5 0.9 2 22 607 627 607 631 0.88 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF585A-203 - 714 9.7e-16 57.3 144.8 20 22 0.011 7.5 6.7 1.4 2 12 635 645 635 647 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF585A-203 - 714 9.7e-16 57.3 144.8 21 22 0.00064 0.46 10.5 0.5 2 24 663 685 663 687 0.95 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF585A-203 - 714 9.7e-16 57.3 144.8 22 22 0.13 93 3.2 0.2 2 11 691 700 691 701 0.93 C2H2-type zinc finger DZR PF12773.7 49 ZNF585A-203 - 714 4.7e-15 55.3 78.6 1 3 0.15 1.1e+02 3.0 14.7 1 41 189 255 95 258 0.83 Double zinc ribbon DZR PF12773.7 49 ZNF585A-203 - 714 4.7e-15 55.3 78.6 2 3 0.00061 0.44 10.6 3.1 11 45 297 357 289 372 0.61 Double zinc ribbon DZR PF12773.7 49 ZNF585A-203 - 714 4.7e-15 55.3 78.6 3 3 0.4 2.8e+02 1.6 17.7 1 49 581 669 541 706 0.81 Double zinc ribbon zf_UBZ PF18439.1 32 ZNF585A-203 - 714 6.1e-11 41.7 84.3 1 21 0.11 79 3.0 0.1 3 13 103 113 101 122 0.80 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF585A-203 - 714 6.1e-11 41.7 84.3 2 21 0.1 74 3.1 0.3 3 12 131 140 129 143 0.89 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF585A-203 - 714 6.1e-11 41.7 84.3 3 21 0.02 14 5.4 0.1 3 13 159 169 157 178 0.79 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF585A-203 - 714 6.1e-11 41.7 84.3 4 21 0.19 1.3e+02 2.2 0.2 3 13 187 197 185 206 0.81 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF585A-203 - 714 6.1e-11 41.7 84.3 5 21 0.18 1.3e+02 2.3 0.1 2 12 214 224 213 233 0.85 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF585A-203 - 714 6.1e-11 41.7 84.3 6 21 0.0048 3.4 7.3 0.2 3 21 243 262 241 262 0.85 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF585A-203 - 714 6.1e-11 41.7 84.3 7 21 0.25 1.8e+02 1.8 0.1 4 12 300 308 297 314 0.86 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF585A-203 - 714 6.1e-11 41.7 84.3 8 21 0.019 13 5.4 0.1 3 14 327 338 325 346 0.78 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF585A-203 - 714 6.1e-11 41.7 84.3 9 21 0.52 3.7e+02 0.8 0.0 2 11 354 363 353 373 0.83 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF585A-203 - 714 6.1e-11 41.7 84.3 10 21 0.87 6.2e+02 0.1 0.1 4 14 384 394 382 401 0.80 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF585A-203 - 714 6.1e-11 41.7 84.3 11 21 0.19 1.4e+02 2.2 0.1 3 13 411 421 409 430 0.78 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF585A-203 - 714 6.1e-11 41.7 84.3 12 21 0.0011 0.75 9.4 0.1 2 21 438 458 437 458 0.86 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF585A-203 - 714 6.1e-11 41.7 84.3 13 21 0.4 2.9e+02 1.2 0.1 3 13 467 477 465 482 0.84 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF585A-203 - 714 6.1e-11 41.7 84.3 14 21 0.051 36 4.1 0.2 2 13 494 505 493 510 0.85 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF585A-203 - 714 6.1e-11 41.7 84.3 15 21 0.058 41 3.9 0.1 3 12 523 532 521 542 0.78 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF585A-203 - 714 6.1e-11 41.7 84.3 16 21 0.0041 2.9 7.6 0.1 3 18 551 567 549 570 0.78 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF585A-203 - 714 6.1e-11 41.7 84.3 17 21 0.0062 4.4 7.0 0.1 3 13 579 589 577 598 0.82 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF585A-203 - 714 6.1e-11 41.7 84.3 18 21 0.0021 1.5 8.4 0.4 3 20 607 625 605 626 0.82 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF585A-203 - 714 6.1e-11 41.7 84.3 19 21 0.0027 1.9 8.1 0.2 3 21 635 654 633 654 0.85 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF585A-203 - 714 6.1e-11 41.7 84.3 20 21 0.0056 4 7.1 0.1 3 15 663 675 661 682 0.76 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF585A-203 - 714 6.1e-11 41.7 84.3 21 21 1 7.2e+02 -0.1 0.2 3 12 691 700 689 704 0.85 Ubiquitin-Binding Zinc Finger zf-C2H2_jaz PF12171.8 27 ZNF585A-203 - 714 1.3e-10 41.2 103.2 1 22 4.8 3.5e+03 -1.5 0.1 9 22 82 95 81 95 0.83 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF585A-203 - 714 1.3e-10 41.2 103.2 2 22 0.93 6.7e+02 0.8 0.2 3 11 104 112 103 129 0.83 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF585A-203 - 714 1.3e-10 41.2 103.2 3 22 0.57 4.1e+02 1.4 0.3 2 11 131 140 130 150 0.90 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF585A-203 - 714 1.3e-10 41.2 103.2 4 22 0.3 2.1e+02 2.3 0.2 2 22 159 179 158 179 0.84 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF585A-203 - 714 1.3e-10 41.2 103.2 5 22 0.11 82 3.7 1.4 2 22 187 207 186 207 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF585A-203 - 714 1.3e-10 41.2 103.2 6 22 4.9 3.5e+03 -1.5 0.2 2 8 215 221 214 234 0.78 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF585A-203 - 714 1.3e-10 41.2 103.2 7 22 2.9e-05 0.021 15.1 0.1 2 22 243 263 242 263 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF585A-203 - 714 1.3e-10 41.2 103.2 8 22 0.36 2.6e+02 2.1 0.1 9 22 278 291 277 291 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF585A-203 - 714 1.3e-10 41.2 103.2 9 22 2.1 1.5e+03 -0.4 0.1 3 11 300 308 298 318 0.87 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF585A-203 - 714 1.3e-10 41.2 103.2 10 22 0.28 2e+02 2.4 0.0 2 22 327 347 326 347 0.90 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF585A-203 - 714 1.3e-10 41.2 103.2 11 22 0.0024 1.7 9.0 0.4 2 22 383 403 382 403 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF585A-203 - 714 1.3e-10 41.2 103.2 12 22 0.027 19 5.7 0.5 2 24 411 433 410 433 0.90 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF585A-203 - 714 1.3e-10 41.2 103.2 13 22 4.5 3.2e+03 -1.4 0.1 2 21 439 458 438 459 0.83 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF585A-203 - 714 1.3e-10 41.2 103.2 14 22 0.92 6.6e+02 0.8 0.5 2 20 467 485 466 487 0.74 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF585A-203 - 714 1.3e-10 41.2 103.2 15 22 0.067 48 4.4 1.3 1 21 494 514 494 515 0.83 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF585A-203 - 714 1.3e-10 41.2 103.2 16 22 0.0048 3.4 8.1 0.0 2 22 523 543 522 543 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF585A-203 - 714 1.3e-10 41.2 103.2 17 22 0.0034 2.4 8.5 0.1 2 20 551 569 550 570 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF585A-203 - 714 1.3e-10 41.2 103.2 18 22 0.0017 1.2 9.5 0.2 2 24 579 601 578 601 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF585A-203 - 714 1.3e-10 41.2 103.2 19 22 0.046 33 4.9 0.1 2 20 607 625 606 625 0.84 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF585A-203 - 714 1.3e-10 41.2 103.2 20 22 0.00087 0.63 10.4 0.2 2 22 635 655 634 655 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF585A-203 - 714 1.3e-10 41.2 103.2 21 22 0.0044 3.1 8.2 0.2 2 24 663 685 662 685 0.91 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF585A-203 - 714 1.3e-10 41.2 103.2 22 22 0.0037 2.6 8.4 0.1 2 24 691 713 690 714 0.94 Zinc-finger double-stranded RNA-binding DUF3268 PF11672.8 118 ZNF585A-203 - 714 2.3e-10 40.8 75.0 1 13 0.37 2.6e+02 1.9 0.1 21 40 93 113 68 127 0.71 zinc-finger-containing domain DUF3268 PF11672.8 118 ZNF585A-203 - 714 2.3e-10 40.8 75.0 2 13 0.01 7.5 6.9 0.3 2 37 130 165 129 177 0.85 zinc-finger-containing domain DUF3268 PF11672.8 118 ZNF585A-203 - 714 2.3e-10 40.8 75.0 3 13 0.0017 1.2 9.5 0.5 3 38 187 222 185 235 0.89 zinc-finger-containing domain DUF3268 PF11672.8 118 ZNF585A-203 - 714 2.3e-10 40.8 75.0 4 13 0.04 29 5.0 0.3 2 36 242 276 241 291 0.86 zinc-finger-containing domain DUF3268 PF11672.8 118 ZNF585A-203 - 714 2.3e-10 40.8 75.0 5 13 0.00049 0.35 11.2 0.8 2 38 298 334 297 341 0.90 zinc-finger-containing domain DUF3268 PF11672.8 118 ZNF585A-203 - 714 2.3e-10 40.8 75.0 6 13 0.0011 0.78 10.1 1.1 2 37 326 361 325 370 0.90 zinc-finger-containing domain DUF3268 PF11672.8 118 ZNF585A-203 - 714 2.3e-10 40.8 75.0 7 13 0.00017 0.12 12.7 0.8 2 38 382 418 381 425 0.90 zinc-finger-containing domain DUF3268 PF11672.8 118 ZNF585A-203 - 714 2.3e-10 40.8 75.0 8 13 0.00087 0.62 10.4 1.7 2 38 410 446 409 454 0.88 zinc-finger-containing domain DUF3268 PF11672.8 118 ZNF585A-203 - 714 2.3e-10 40.8 75.0 9 13 0.0017 1.2 9.4 1.8 2 38 466 502 465 509 0.91 zinc-finger-containing domain DUF3268 PF11672.8 118 ZNF585A-203 - 714 2.3e-10 40.8 75.0 10 13 0.0043 3.1 8.2 1.4 3 38 495 531 493 544 0.86 zinc-finger-containing domain DUF3268 PF11672.8 118 ZNF585A-203 - 714 2.3e-10 40.8 75.0 11 13 0.0056 4 7.8 0.7 2 39 522 559 521 570 0.78 zinc-finger-containing domain DUF3268 PF11672.8 118 ZNF585A-203 - 714 2.3e-10 40.8 75.0 12 13 0.003 2.2 8.7 1.0 2 41 578 617 577 626 0.88 zinc-finger-containing domain DUF3268 PF11672.8 118 ZNF585A-203 - 714 2.3e-10 40.8 75.0 13 13 0.00047 0.34 11.3 1.0 2 38 634 670 633 687 0.88 zinc-finger-containing domain zinc_ribbon_15 PF17032.5 86 ZNF585A-203 - 714 2.7e-09 37.7 88.1 1 13 0.81 5.8e+02 1.3 0.3 37 78 74 115 42 118 0.68 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF585A-203 - 714 2.7e-09 37.7 88.1 2 13 0.028 20 6.0 0.7 33 74 98 139 90 147 0.85 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF585A-203 - 714 2.7e-09 37.7 88.1 3 13 0.00076 0.54 11.0 1.1 30 78 151 199 139 202 0.83 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF585A-203 - 714 2.7e-09 37.7 88.1 4 13 0.0087 6.2 7.6 0.7 31 77 208 254 202 258 0.84 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF585A-203 - 714 2.7e-09 37.7 88.1 5 13 0.14 1e+02 3.8 3.7 35 75 240 308 230 314 0.61 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF585A-203 - 714 2.7e-09 37.7 88.1 6 13 0.019 13 6.6 3.0 31 75 320 364 313 398 0.82 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF585A-203 - 714 2.7e-09 37.7 88.1 7 13 0.0016 1.2 10.0 5.8 32 77 405 450 369 454 0.83 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF585A-203 - 714 2.7e-09 37.7 88.1 8 13 0.00071 0.51 11.1 2.8 30 78 459 507 454 510 0.83 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF585A-203 - 714 2.7e-09 37.7 88.1 9 13 0.0057 4.1 8.2 0.9 30 78 515 563 509 566 0.80 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF585A-203 - 714 2.7e-09 37.7 88.1 10 13 0.00036 0.26 12.1 1.4 34 78 575 619 568 623 0.85 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF585A-203 - 714 2.7e-09 37.7 88.1 11 13 0.0024 1.7 9.4 2.8 34 78 603 647 596 650 0.85 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF585A-203 - 714 2.7e-09 37.7 88.1 12 13 0.0011 0.8 10.5 1.3 30 78 627 675 621 679 0.84 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF585A-203 - 714 2.7e-09 37.7 88.1 13 13 0.0048 3.5 8.5 0.7 33 78 658 703 652 708 0.83 zinc-ribbon family C1_4 PF07975.12 55 ZNF585A-203 - 714 3.3e-09 36.8 93.2 1 17 1.7 1.2e+03 -0.2 0.3 22 42 71 91 52 110 0.51 TFIIH C1-like domain C1_4 PF07975.12 55 ZNF585A-203 - 714 3.3e-09 36.8 93.2 2 17 0.27 1.9e+02 2.4 0.6 14 48 85 125 73 128 0.65 TFIIH C1-like domain C1_4 PF07975.12 55 ZNF585A-203 - 714 3.3e-09 36.8 93.2 3 17 0.0082 5.9 7.2 2.4 2 49 105 154 104 156 0.82 TFIIH C1-like domain C1_4 PF07975.12 55 ZNF585A-203 - 714 3.3e-09 36.8 93.2 4 17 7.7e-06 0.0055 16.9 2.6 2 49 133 182 132 184 0.86 TFIIH C1-like domain C1_4 PF07975.12 55 ZNF585A-203 - 714 3.3e-09 36.8 93.2 5 17 0.012 8.8 6.7 2.2 1 48 188 237 188 240 0.81 TFIIH C1-like domain C1_4 PF07975.12 55 ZNF585A-203 - 714 3.3e-09 36.8 93.2 6 17 0.0021 1.5 9.1 1.4 2 49 217 266 216 269 0.86 TFIIH C1-like domain C1_4 PF07975.12 55 ZNF585A-203 - 714 3.3e-09 36.8 93.2 7 17 0.06 43 4.4 0.1 20 49 293 322 273 324 0.76 TFIIH C1-like domain C1_4 PF07975.12 55 ZNF585A-203 - 714 3.3e-09 36.8 93.2 8 17 0.02 14 6.0 1.2 2 49 301 350 300 352 0.77 TFIIH C1-like domain C1_4 PF07975.12 55 ZNF585A-203 - 714 3.3e-09 36.8 93.2 9 17 0.016 11 6.3 1.5 1 49 328 378 328 381 0.86 TFIIH C1-like domain C1_4 PF07975.12 55 ZNF585A-203 - 714 3.3e-09 36.8 93.2 10 17 0.073 52 4.2 3.1 2 49 357 406 356 408 0.86 TFIIH C1-like domain C1_4 PF07975.12 55 ZNF585A-203 - 714 3.3e-09 36.8 93.2 11 17 0.00057 0.41 10.9 1.8 2 49 413 462 412 464 0.86 TFIIH C1-like domain C1_4 PF07975.12 55 ZNF585A-203 - 714 3.3e-09 36.8 93.2 12 17 0.0037 2.7 8.3 3.0 2 49 441 490 441 492 0.87 TFIIH C1-like domain C1_4 PF07975.12 55 ZNF585A-203 - 714 3.3e-09 36.8 93.2 13 17 0.0059 4.2 7.7 4.6 1 49 468 518 468 521 0.83 TFIIH C1-like domain C1_4 PF07975.12 55 ZNF585A-203 - 714 3.3e-09 36.8 93.2 14 17 0.0034 2.4 8.4 0.8 2 49 525 574 524 576 0.86 TFIIH C1-like domain C1_4 PF07975.12 55 ZNF585A-203 - 714 3.3e-09 36.8 93.2 15 17 0.006 4.3 7.7 1.1 2 49 581 630 580 632 0.80 TFIIH C1-like domain C1_4 PF07975.12 55 ZNF585A-203 - 714 3.3e-09 36.8 93.2 16 17 0.011 8.1 6.8 2.7 2 49 609 658 608 661 0.85 TFIIH C1-like domain C1_4 PF07975.12 55 ZNF585A-203 - 714 3.3e-09 36.8 93.2 17 17 0.025 18 5.7 1.3 2 47 665 712 664 714 0.69 TFIIH C1-like domain XPA_N PF01286.18 32 ZNF585A-203 - 714 1.6e-08 34.4 76.4 1 21 0.034 24 5.1 0.1 3 12 104 113 103 114 0.88 XPA protein N-terminal XPA_N PF01286.18 32 ZNF585A-203 - 714 1.6e-08 34.4 76.4 2 21 0.027 19 5.4 0.3 3 11 132 140 130 149 0.74 XPA protein N-terminal XPA_N PF01286.18 32 ZNF585A-203 - 714 1.6e-08 34.4 76.4 3 21 0.36 2.6e+02 1.8 0.1 3 11 160 168 159 170 0.89 XPA protein N-terminal XPA_N PF01286.18 32 ZNF585A-203 - 714 1.6e-08 34.4 76.4 4 21 0.071 51 4.0 0.4 3 12 188 197 186 200 0.88 XPA protein N-terminal XPA_N PF01286.18 32 ZNF585A-203 - 714 1.6e-08 34.4 76.4 5 21 0.079 57 3.9 0.1 3 12 216 225 215 226 0.87 XPA protein N-terminal XPA_N PF01286.18 32 ZNF585A-203 - 714 1.6e-08 34.4 76.4 6 21 0.3 2.2e+02 2.0 0.1 3 12 244 253 242 260 0.85 XPA protein N-terminal XPA_N PF01286.18 32 ZNF585A-203 - 714 1.6e-08 34.4 76.4 7 21 0.041 29 4.8 0.1 3 12 300 309 298 310 0.88 XPA protein N-terminal XPA_N PF01286.18 32 ZNF585A-203 - 714 1.6e-08 34.4 76.4 8 21 0.076 54 3.9 0.2 3 12 328 337 326 341 0.89 XPA protein N-terminal XPA_N PF01286.18 32 ZNF585A-203 - 714 1.6e-08 34.4 76.4 9 21 1.6 1.2e+03 -0.3 0.0 3 11 356 364 355 366 0.83 XPA protein N-terminal XPA_N PF01286.18 32 ZNF585A-203 - 714 1.6e-08 34.4 76.4 10 21 0.42 3e+02 1.6 0.1 3 12 384 393 382 398 0.85 XPA protein N-terminal XPA_N PF01286.18 32 ZNF585A-203 - 714 1.6e-08 34.4 76.4 11 21 0.075 53 4.0 0.0 3 12 412 421 410 429 0.85 XPA protein N-terminal XPA_N PF01286.18 32 ZNF585A-203 - 714 1.6e-08 34.4 76.4 12 21 0.11 77 3.5 0.0 3 12 440 449 439 456 0.90 XPA protein N-terminal XPA_N PF01286.18 32 ZNF585A-203 - 714 1.6e-08 34.4 76.4 13 21 0.2 1.5e+02 2.6 0.1 3 12 468 477 466 482 0.88 XPA protein N-terminal XPA_N PF01286.18 32 ZNF585A-203 - 714 1.6e-08 34.4 76.4 14 21 0.024 17 5.5 0.2 3 12 496 505 494 510 0.88 XPA protein N-terminal XPA_N PF01286.18 32 ZNF585A-203 - 714 1.6e-08 34.4 76.4 15 21 0.17 1.2e+02 2.8 0.0 3 11 524 532 522 534 0.88 XPA protein N-terminal XPA_N PF01286.18 32 ZNF585A-203 - 714 1.6e-08 34.4 76.4 16 21 0.064 46 4.2 0.2 3 12 552 561 550 569 0.79 XPA protein N-terminal XPA_N PF01286.18 32 ZNF585A-203 - 714 1.6e-08 34.4 76.4 17 21 0.038 27 4.9 0.0 3 12 580 589 578 597 0.84 XPA protein N-terminal XPA_N PF01286.18 32 ZNF585A-203 - 714 1.6e-08 34.4 76.4 18 21 0.031 22 5.2 0.1 3 12 608 617 606 626 0.84 XPA protein N-terminal XPA_N PF01286.18 32 ZNF585A-203 - 714 1.6e-08 34.4 76.4 19 21 0.087 63 3.7 0.2 3 12 636 645 634 652 0.85 XPA protein N-terminal XPA_N PF01286.18 32 ZNF585A-203 - 714 1.6e-08 34.4 76.4 20 21 0.011 7.9 6.6 0.0 3 13 664 674 662 678 0.91 XPA protein N-terminal XPA_N PF01286.18 32 ZNF585A-203 - 714 1.6e-08 34.4 76.4 21 21 4.7 3.4e+03 -1.8 0.1 3 11 692 700 691 702 0.83 XPA protein N-terminal zf-trcl PF13451.6 48 ZNF585A-203 - 714 1.9e-08 34.0 82.4 1 20 0.14 1e+02 2.9 0.1 3 15 101 113 100 124 0.91 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF585A-203 - 714 1.9e-08 34.0 82.4 2 20 0.027 19 5.2 0.2 2 14 128 140 127 144 0.88 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF585A-203 - 714 1.9e-08 34.0 82.4 3 20 0.4 2.9e+02 1.5 0.1 4 16 158 170 156 173 0.80 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF585A-203 - 714 1.9e-08 34.0 82.4 4 20 0.088 63 3.6 0.4 4 15 186 197 184 200 0.85 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF585A-203 - 714 1.9e-08 34.0 82.4 5 20 0.29 2.1e+02 1.9 0.1 4 15 214 225 212 227 0.88 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF585A-203 - 714 1.9e-08 34.0 82.4 6 20 0.053 38 4.3 0.0 3 15 241 253 239 261 0.86 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF585A-203 - 714 1.9e-08 34.0 82.4 7 20 0.024 18 5.4 0.1 3 16 297 310 295 313 0.84 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF585A-203 - 714 1.9e-08 34.0 82.4 8 20 0.026 19 5.3 0.1 3 15 325 337 323 340 0.89 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF585A-203 - 714 1.9e-08 34.0 82.4 9 20 0.46 3.3e+02 1.3 0.1 3 15 353 365 352 369 0.85 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF585A-203 - 714 1.9e-08 34.0 82.4 10 20 0.05 36 4.4 1.6 4 43 382 420 379 425 0.61 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF585A-203 - 714 1.9e-08 34.0 82.4 11 20 0.087 62 3.6 0.1 3 15 437 449 435 451 0.89 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF585A-203 - 714 1.9e-08 34.0 82.4 12 20 0.19 1.4e+02 2.5 0.1 3 15 465 477 463 480 0.87 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF585A-203 - 714 1.9e-08 34.0 82.4 13 20 0.36 2.6e+02 1.6 0.3 4 14 494 504 492 505 0.85 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF585A-203 - 714 1.9e-08 34.0 82.4 14 20 0.015 11 6.0 0.1 3 15 521 533 519 536 0.91 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF585A-203 - 714 1.9e-08 34.0 82.4 15 20 0.016 12 5.9 0.1 3 15 549 561 547 565 0.88 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF585A-203 - 714 1.9e-08 34.0 82.4 16 20 0.045 32 4.5 0.1 3 14 577 588 575 589 0.89 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF585A-203 - 714 1.9e-08 34.0 82.4 17 20 0.07 50 3.9 0.1 3 14 605 616 603 617 0.90 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF585A-203 - 714 1.9e-08 34.0 82.4 18 20 0.016 11 6.0 0.1 3 15 633 645 631 652 0.88 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF585A-203 - 714 1.9e-08 34.0 82.4 19 20 0.022 16 5.5 0.1 3 15 661 673 659 674 0.90 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF585A-203 - 714 1.9e-08 34.0 82.4 20 20 0.065 47 4.0 0.1 2 15 688 701 687 710 0.91 Probable zinc-ribbon domain ADK_lid PF05191.14 36 ZNF585A-203 - 714 2.7e-07 30.5 61.4 1 11 0.0087 6.2 6.9 0.5 3 33 104 142 103 143 0.82 Adenylate kinase, active site lid ADK_lid PF05191.14 36 ZNF585A-203 - 714 2.7e-07 30.5 61.4 2 11 0.19 1.4e+02 2.6 2.1 4 33 189 226 159 228 0.54 Adenylate kinase, active site lid ADK_lid PF05191.14 36 ZNF585A-203 - 714 2.7e-07 30.5 61.4 3 11 0.039 28 4.8 1.9 4 34 245 311 243 368 0.60 Adenylate kinase, active site lid ADK_lid PF05191.14 36 ZNF585A-203 - 714 2.7e-07 30.5 61.4 4 11 0.12 86 3.2 0.2 3 29 356 390 355 396 0.73 Adenylate kinase, active site lid ADK_lid PF05191.14 36 ZNF585A-203 - 714 2.7e-07 30.5 61.4 5 11 0.025 18 5.4 0.7 4 35 385 424 383 424 0.79 Adenylate kinase, active site lid ADK_lid PF05191.14 36 ZNF585A-203 - 714 2.7e-07 30.5 61.4 6 11 7.6e-06 0.0055 16.7 0.3 3 36 412 453 411 453 0.84 Adenylate kinase, active site lid ADK_lid PF05191.14 36 ZNF585A-203 - 714 2.7e-07 30.5 61.4 7 11 2.9 2.1e+03 -1.2 0.0 24 33 469 478 465 482 0.71 Adenylate kinase, active site lid ADK_lid PF05191.14 36 ZNF585A-203 - 714 2.7e-07 30.5 61.4 8 11 0.0095 6.8 6.8 0.7 4 33 497 534 495 536 0.74 Adenylate kinase, active site lid ADK_lid PF05191.14 36 ZNF585A-203 - 714 2.7e-07 30.5 61.4 9 11 0.0074 5.3 7.1 3.8 3 33 580 618 551 620 0.82 Adenylate kinase, active site lid ADK_lid PF05191.14 36 ZNF585A-203 - 714 2.7e-07 30.5 61.4 10 11 0.051 36 4.4 1.4 3 31 608 644 607 648 0.70 Adenylate kinase, active site lid ADK_lid PF05191.14 36 ZNF585A-203 - 714 2.7e-07 30.5 61.4 11 11 0.046 33 4.6 5.1 22 35 663 676 635 704 0.51 Adenylate kinase, active site lid # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF585A-203.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF585A-203.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF585A-203.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF585A-203.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF585A-203.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:10:10 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- KRAB PF01352.27 42 ZNF585A-204 - 113 2.3e-25 87.9 1.0 1 2 2.6e-29 2.4e-25 87.9 0.0 1 42 26 67 26 67 0.99 KRAB box KRAB PF01352.27 42 ZNF585A-204 - 113 2.3e-25 87.9 1.0 2 2 0.87 7.8e+03 -3.4 0.2 30 33 76 79 75 80 0.85 KRAB box # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF585A-204.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF585A-204.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF585A-204.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF585A-204.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF585A-204.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:10:10 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF585A-205.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF585A-205.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF585A-205.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF585A-205.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF585A-205.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:10:11 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- KRAB PF01352.27 42 ZNF585A-206 - 98 1.7e-25 88.4 1.0 1 2 9.6e-30 1.7e-25 88.4 0.0 1 42 26 67 26 67 0.99 KRAB box KRAB PF01352.27 42 ZNF585A-206 - 98 1.7e-25 88.4 1.0 2 2 0.37 6.6e+03 -3.1 0.2 30 33 76 79 75 80 0.85 KRAB box # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF585A-206.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF585A-206.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF585A-206.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF585A-206.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF585A-206.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:10:11 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF585B-201.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF585B-201.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF585B-201.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF585B-201.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF585B-201.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:10:11 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF585B-202.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF585B-202.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF585B-202.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF585B-202.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF585B-202.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:10:12 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZNF585B-203 - 583 2.1e-141 454.7 108.3 1 20 1.6e-08 1e-05 25.7 3.3 3 24 16 37 14 39 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF585B-203 - 583 2.1e-141 454.7 108.3 2 20 1.3e-08 8.4e-06 26.0 0.8 2 25 43 66 42 67 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF585B-203 - 583 2.1e-141 454.7 108.3 3 20 1.6e-05 0.01 16.2 0.0 2 24 71 93 70 95 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF585B-203 - 583 2.1e-141 454.7 108.3 4 20 1.2e-09 7.6e-07 29.3 0.1 2 24 99 121 98 123 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF585B-203 - 583 2.1e-141 454.7 108.3 5 20 3.2e-05 0.021 15.3 0.1 2 26 127 151 126 151 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF585B-203 - 583 2.1e-141 454.7 108.3 6 20 0.078 50 4.6 0.1 17 25 170 178 154 179 0.76 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF585B-203 - 583 2.1e-141 454.7 108.3 7 20 2.5e-10 1.6e-07 31.4 0.1 5 25 186 206 182 207 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF585B-203 - 583 2.1e-141 454.7 108.3 8 20 1.5e-06 0.00099 19.4 0.0 1 24 210 233 210 235 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF585B-203 - 583 2.1e-141 454.7 108.3 9 20 2.2e-08 1.4e-05 25.3 1.5 2 26 239 263 238 263 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF585B-203 - 583 2.1e-141 454.7 108.3 10 20 7.2e-10 4.6e-07 30.0 2.1 5 26 270 291 267 291 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF585B-203 - 583 2.1e-141 454.7 108.3 11 20 1.6e-08 1e-05 25.7 0.5 1 25 294 318 294 319 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF585B-203 - 583 2.1e-141 454.7 108.3 12 20 4.8e-11 3e-08 33.7 0.2 2 25 323 346 322 347 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF585B-203 - 583 2.1e-141 454.7 108.3 13 20 5.4e-10 3.5e-07 30.4 0.4 1 25 350 374 350 375 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF585B-203 - 583 2.1e-141 454.7 108.3 14 20 9.1e-09 5.8e-06 26.5 0.1 5 24 382 401 379 403 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF585B-203 - 583 2.1e-141 454.7 108.3 15 20 2.6e-11 1.7e-08 34.5 0.5 4 26 409 431 406 431 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF585B-203 - 583 2.1e-141 454.7 108.3 16 20 1.3e-07 8.2e-05 22.9 0.2 5 25 438 458 435 458 0.89 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF585B-203 - 583 2.1e-141 454.7 108.3 17 20 1.4e-10 8.9e-08 32.2 1.0 1 25 462 486 462 487 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF585B-203 - 583 2.1e-141 454.7 108.3 18 20 2.9e-10 1.9e-07 31.2 1.4 3 26 492 515 490 515 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF585B-203 - 583 2.1e-141 454.7 108.3 19 20 1.2e-10 8e-08 32.4 0.1 2 26 519 543 518 543 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF585B-203 - 583 2.1e-141 454.7 108.3 20 20 1e-09 6.5e-07 29.5 0.2 1 25 546 570 546 571 0.96 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZNF585B-203 - 583 3.7e-120 386.1 131.9 1 20 9.3e-07 0.0006 20.1 0.1 1 23 28 50 28 50 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF585B-203 - 583 3.7e-120 386.1 131.9 2 20 1.6e-08 1e-05 25.7 1.4 1 23 56 78 56 78 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF585B-203 - 583 3.7e-120 386.1 131.9 3 20 5e-05 0.032 14.7 0.1 1 23 84 106 84 106 0.93 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF585B-203 - 583 3.7e-120 386.1 131.9 4 20 1.1e-09 7e-07 29.4 0.5 1 23 112 134 112 134 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF585B-203 - 583 3.7e-120 386.1 131.9 5 20 0.0034 2.2 8.9 0.0 6 21 142 160 139 161 0.80 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF585B-203 - 583 3.7e-120 386.1 131.9 6 20 1.6e-07 0.0001 22.5 0.1 3 23 170 190 169 190 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF585B-203 - 583 3.7e-120 386.1 131.9 7 20 1.2e-09 7.7e-07 29.2 0.2 1 23 196 218 196 218 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF585B-203 - 583 3.7e-120 386.1 131.9 8 20 5e-06 0.0032 17.8 0.3 1 23 224 246 224 246 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF585B-203 - 583 3.7e-120 386.1 131.9 9 20 5.9e-07 0.00037 20.8 4.7 1 23 252 274 252 274 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF585B-203 - 583 3.7e-120 386.1 131.9 10 20 1.2e-09 7.5e-07 29.3 1.0 1 23 280 302 280 302 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF585B-203 - 583 3.7e-120 386.1 131.9 11 20 1e-08 6.5e-06 26.3 0.4 1 23 308 330 308 330 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF585B-203 - 583 3.7e-120 386.1 131.9 12 20 2.9e-09 1.9e-06 28.0 0.5 1 23 336 358 336 358 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF585B-203 - 583 3.7e-120 386.1 131.9 13 20 2.6e-07 0.00017 21.9 0.4 1 23 364 386 364 386 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF585B-203 - 583 3.7e-120 386.1 131.9 14 20 7.7e-09 4.9e-06 26.7 0.4 1 23 392 414 392 414 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF585B-203 - 583 3.7e-120 386.1 131.9 15 20 3.4e-08 2.2e-05 24.7 0.4 1 20 420 439 420 442 0.94 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF585B-203 - 583 3.7e-120 386.1 131.9 16 20 1.5e-08 9.4e-06 25.8 0.3 1 23 448 470 448 470 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF585B-203 - 583 3.7e-120 386.1 131.9 17 20 2.8e-08 1.8e-05 24.9 1.7 1 23 476 498 476 498 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF585B-203 - 583 3.7e-120 386.1 131.9 18 20 3.3e-10 2.1e-07 31.0 0.9 1 23 504 526 504 526 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF585B-203 - 583 3.7e-120 386.1 131.9 19 20 3.3e-09 2.1e-06 27.9 0.5 1 23 532 554 532 554 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF585B-203 - 583 3.7e-120 386.1 131.9 20 20 1.6e-06 0.001 19.4 0.3 1 23 560 582 560 582 0.98 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZNF585B-203 - 583 1.5e-65 212.1 123.3 1 20 4.1e-05 0.026 15.3 0.1 1 23 28 50 28 51 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF585B-203 - 583 1.5e-65 212.1 123.3 2 20 5.2e-05 0.033 15.0 1.0 1 23 56 78 56 79 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF585B-203 - 583 1.5e-65 212.1 123.3 3 20 0.00031 0.2 12.6 0.1 1 23 84 106 84 107 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF585B-203 - 583 1.5e-65 212.1 123.3 4 20 5.4e-06 0.0035 18.1 0.6 1 23 112 134 112 135 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF585B-203 - 583 1.5e-65 212.1 123.3 5 20 0.16 1e+02 4.2 0.0 6 21 142 160 140 163 0.80 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF585B-203 - 583 1.5e-65 212.1 123.3 6 20 0.00037 0.24 12.4 0.1 2 23 169 190 168 191 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF585B-203 - 583 1.5e-65 212.1 123.3 7 20 2.3e-05 0.015 16.1 0.2 1 23 196 218 196 219 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF585B-203 - 583 1.5e-65 212.1 123.3 8 20 0.0072 4.6 8.3 0.2 1 23 224 246 224 247 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF585B-203 - 583 1.5e-65 212.1 123.3 9 20 1.2e-05 0.008 16.9 3.7 1 23 252 274 252 275 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF585B-203 - 583 1.5e-65 212.1 123.3 10 20 7.3e-06 0.0046 17.7 0.5 1 23 280 302 280 303 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF585B-203 - 583 1.5e-65 212.1 123.3 11 20 2.7e-05 0.017 15.9 0.3 1 23 308 330 308 331 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF585B-203 - 583 1.5e-65 212.1 123.3 12 20 0.00016 0.099 13.5 0.3 1 23 336 358 336 359 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF585B-203 - 583 1.5e-65 212.1 123.3 13 20 0.00015 0.098 13.5 0.5 1 23 364 386 364 387 0.89 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF585B-203 - 583 1.5e-65 212.1 123.3 14 20 0.00012 0.075 13.9 0.3 1 23 392 414 392 415 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF585B-203 - 583 1.5e-65 212.1 123.3 15 20 4.3e-06 0.0027 18.4 0.5 1 21 420 440 420 443 0.90 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF585B-203 - 583 1.5e-65 212.1 123.3 16 20 1e-05 0.0066 17.2 0.4 1 23 448 470 448 471 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF585B-203 - 583 1.5e-65 212.1 123.3 17 20 1e-05 0.0065 17.2 1.1 1 23 476 498 476 499 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF585B-203 - 583 1.5e-65 212.1 123.3 18 20 3.3e-06 0.0021 18.7 0.8 1 23 504 526 504 527 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF585B-203 - 583 1.5e-65 212.1 123.3 19 20 2.4e-05 0.016 16.0 0.4 1 23 532 554 532 555 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF585B-203 - 583 1.5e-65 212.1 123.3 20 20 0.0001 0.066 14.1 0.3 1 23 560 582 560 583 0.94 C2H2-type zinc finger Zn-ribbon_8 PF09723.10 40 ZNF585B-203 - 583 6e-27 93.5 78.2 1 15 0.037 23 5.2 0.1 6 15 28 37 27 51 0.89 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF585B-203 - 583 6e-27 93.5 78.2 2 15 0.0003 0.19 11.9 1.1 7 34 57 91 54 97 0.90 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF585B-203 - 583 6e-27 93.5 78.2 3 15 0.012 7.6 6.7 1.3 6 17 112 129 111 144 0.70 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF585B-203 - 583 6e-27 93.5 78.2 4 15 0.031 20 5.4 0.4 6 35 140 176 139 181 0.62 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF585B-203 - 583 6e-27 93.5 78.2 5 15 2e-05 0.013 15.6 0.6 6 34 196 231 195 237 0.91 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF585B-203 - 583 6e-27 93.5 78.2 6 15 4.7e-05 0.03 14.4 0.9 6 35 252 288 251 293 0.86 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF585B-203 - 583 6e-27 93.5 78.2 7 15 3e-05 0.019 15.1 1.0 6 37 280 318 279 321 0.87 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF585B-203 - 583 6e-27 93.5 78.2 8 15 3.7e-05 0.024 14.8 1.8 6 36 308 345 306 349 0.89 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF585B-203 - 583 6e-27 93.5 78.2 9 15 0.01 6.4 7.0 0.3 6 17 336 347 334 358 0.82 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF585B-203 - 583 6e-27 93.5 78.2 10 15 5.2e-07 0.00034 20.7 1.2 5 35 363 400 363 404 0.90 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF585B-203 - 583 6e-27 93.5 78.2 11 15 9.9e-06 0.0063 16.6 2.1 6 34 420 455 419 460 0.92 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF585B-203 - 583 6e-27 93.5 78.2 12 15 1.5e-05 0.0093 16.1 1.9 6 38 448 487 447 489 0.92 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF585B-203 - 583 6e-27 93.5 78.2 13 15 4.3e-06 0.0028 17.7 2.4 6 35 504 540 503 544 0.92 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF585B-203 - 583 6e-27 93.5 78.2 14 15 0.00036 0.23 11.6 1.3 6 38 532 572 531 574 0.87 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF585B-203 - 583 6e-27 93.5 78.2 15 15 0.23 1.5e+02 2.6 0.1 6 16 560 570 559 581 0.83 Zinc ribbon domain zf-C2H2_6 PF13912.6 27 ZNF585B-203 - 583 8.5e-18 63.9 130.3 1 21 7.8 5e+03 -2.3 2.1 18 26 12 20 12 21 0.76 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF585B-203 - 583 8.5e-18 63.9 130.3 2 21 0.00012 0.074 13.1 0.2 2 13 28 39 27 50 0.86 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF585B-203 - 583 8.5e-18 63.9 130.3 3 21 0.011 6.9 6.8 0.6 1 11 55 65 55 67 0.92 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF585B-203 - 583 8.5e-18 63.9 130.3 4 21 0.25 1.6e+02 2.4 0.1 2 24 84 106 83 109 0.84 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF585B-203 - 583 8.5e-18 63.9 130.3 5 21 0.013 8.6 6.5 0.8 2 11 112 121 112 125 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF585B-203 - 583 8.5e-18 63.9 130.3 6 21 1 6.6e+02 0.5 0.0 2 20 140 158 140 160 0.86 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF585B-203 - 583 8.5e-18 63.9 130.3 7 21 0.003 1.9 8.6 0.1 3 20 169 186 169 192 0.79 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF585B-203 - 583 8.5e-18 63.9 130.3 8 21 0.046 30 4.8 0.2 2 20 196 214 196 220 0.80 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF585B-203 - 583 8.5e-18 63.9 130.3 9 21 3.3 2.1e+03 -1.2 0.1 2 11 224 233 223 243 0.79 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF585B-203 - 583 8.5e-18 63.9 130.3 10 21 0.55 3.5e+02 1.3 3.5 2 22 252 272 252 276 0.81 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF585B-203 - 583 8.5e-18 63.9 130.3 11 21 9e-05 0.058 13.4 0.6 2 24 280 302 280 305 0.95 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF585B-203 - 583 8.5e-18 63.9 130.3 12 21 0.00078 0.5 10.4 0.2 2 24 308 330 307 333 0.87 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF585B-203 - 583 8.5e-18 63.9 130.3 13 21 0.0013 0.83 9.7 0.5 2 21 336 355 336 360 0.79 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF585B-203 - 583 8.5e-18 63.9 130.3 14 21 0.0015 0.94 9.6 0.7 2 12 364 374 363 375 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF585B-203 - 583 8.5e-18 63.9 130.3 15 21 0.026 17 5.6 0.2 2 11 392 401 392 412 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF585B-203 - 583 8.5e-18 63.9 130.3 16 21 0.0037 2.4 8.3 1.6 2 13 420 431 420 432 0.96 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF585B-203 - 583 8.5e-18 63.9 130.3 17 21 0.0012 0.79 9.8 1.2 2 24 448 470 448 473 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF585B-203 - 583 8.5e-18 63.9 130.3 18 21 6.8e-05 0.043 13.8 0.9 2 22 476 496 476 500 0.88 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF585B-203 - 583 8.5e-18 63.9 130.3 19 21 0.0094 6 7.0 1.4 2 12 504 514 504 516 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF585B-203 - 583 8.5e-18 63.9 130.3 20 21 0.00024 0.16 12.0 0.8 2 24 532 554 532 556 0.96 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF585B-203 - 583 8.5e-18 63.9 130.3 21 21 0.12 75 3.5 0.2 2 11 560 569 560 570 0.93 C2H2-type zinc finger zf-C2H2_jaz PF12171.8 27 ZNF585B-203 - 583 2.4e-16 59.6 83.3 1 19 0.26 1.7e+02 2.7 0.1 2 20 28 46 27 48 0.75 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF585B-203 - 583 2.4e-16 59.6 83.3 2 19 0.29 1.9e+02 2.5 1.3 2 22 56 76 55 76 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF585B-203 - 583 2.4e-16 59.6 83.3 3 19 0.9 5.7e+02 1.0 0.1 2 21 84 103 83 104 0.82 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF585B-203 - 583 2.4e-16 59.6 83.3 4 19 4.9e-05 0.031 14.6 0.2 2 22 112 132 111 132 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF585B-203 - 583 2.4e-16 59.6 83.3 5 19 0.44 2.8e+02 1.9 0.1 9 22 147 160 146 160 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF585B-203 - 583 2.4e-16 59.6 83.3 6 19 1.9 1.2e+03 -0.1 0.1 3 11 169 177 167 187 0.87 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF585B-203 - 583 2.4e-16 59.6 83.3 7 19 0.64 4.1e+02 1.4 0.0 2 22 196 216 195 216 0.90 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF585B-203 - 583 2.4e-16 59.6 83.3 8 19 0.0015 0.97 9.8 0.3 2 22 252 272 251 272 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF585B-203 - 583 2.4e-16 59.6 83.3 9 19 0.039 25 5.3 0.4 4 24 282 302 279 302 0.88 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF585B-203 - 583 2.4e-16 59.6 83.3 10 19 4 2.5e+03 -1.1 0.1 2 21 308 327 307 328 0.83 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF585B-203 - 583 2.4e-16 59.6 83.3 11 19 0.38 2.4e+02 2.1 0.4 2 22 336 356 335 356 0.83 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF585B-203 - 583 2.4e-16 59.6 83.3 12 19 0.06 38 4.7 1.3 1 21 363 383 363 384 0.83 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF585B-203 - 583 2.4e-16 59.6 83.3 13 19 0.0042 2.7 8.4 0.0 2 22 392 412 391 412 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF585B-203 - 583 2.4e-16 59.6 83.3 14 19 0.003 1.9 8.8 0.1 2 20 420 438 419 439 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF585B-203 - 583 2.4e-16 59.6 83.3 15 19 0.0015 0.95 9.8 0.2 2 24 448 470 447 470 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF585B-203 - 583 2.4e-16 59.6 83.3 16 19 0.041 26 5.2 0.1 2 20 476 494 475 494 0.84 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF585B-203 - 583 2.4e-16 59.6 83.3 17 19 0.00078 0.5 10.7 0.2 2 22 504 524 503 524 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF585B-203 - 583 2.4e-16 59.6 83.3 18 19 0.00054 0.35 11.2 0.3 2 24 532 554 531 554 0.91 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF585B-203 - 583 2.4e-16 59.6 83.3 19 19 0.0033 2.1 8.7 0.1 2 24 560 582 559 583 0.94 Zinc-finger double-stranded RNA-binding DZR PF12773.7 49 ZNF585B-203 - 583 3.8e-16 58.8 68.2 1 5 0.011 6.8 6.8 1.2 14 41 29 68 18 71 0.78 Double zinc ribbon DZR PF12773.7 49 ZNF585B-203 - 583 3.8e-16 58.8 68.2 2 5 0.00015 0.094 12.8 3.7 1 41 58 124 58 127 0.81 Double zinc ribbon DZR PF12773.7 49 ZNF585B-203 - 583 3.8e-16 58.8 68.2 3 5 0.024 15 5.7 10.3 1 40 198 263 158 298 0.56 Double zinc ribbon DZR PF12773.7 49 ZNF585B-203 - 583 3.8e-16 58.8 68.2 4 5 4.8 3.1e+03 -1.7 22.0 1 48 338 425 281 466 0.62 Double zinc ribbon DZR PF12773.7 49 ZNF585B-203 - 583 3.8e-16 58.8 68.2 5 5 0.068 43 4.2 15.7 1 49 450 538 450 575 0.69 Double zinc ribbon zf_UBZ PF18439.1 32 ZNF585B-203 - 583 4.4e-14 51.8 72.7 1 19 0.0058 3.7 7.2 0.1 3 15 28 40 26 47 0.79 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF585B-203 - 583 4.4e-14 51.8 72.7 2 19 0.19 1.2e+02 2.4 0.1 3 12 56 65 54 72 0.84 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF585B-203 - 583 4.4e-14 51.8 72.7 3 19 0.085 54 3.5 0.1 2 15 83 96 82 103 0.75 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF585B-203 - 583 4.4e-14 51.8 72.7 4 19 0.021 14 5.4 0.2 3 21 112 131 110 131 0.85 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF585B-203 - 583 4.4e-14 51.8 72.7 5 19 0.22 1.4e+02 2.2 0.1 4 12 169 177 166 183 0.86 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF585B-203 - 583 4.4e-14 51.8 72.7 6 19 0.059 37 4.0 0.1 3 14 196 207 194 215 0.78 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF585B-203 - 583 4.4e-14 51.8 72.7 7 19 0.53 3.4e+02 1.0 0.0 2 10 223 231 222 242 0.85 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF585B-203 - 583 4.4e-14 51.8 72.7 8 19 0.17 1.1e+02 2.5 0.1 3 14 252 263 250 270 0.82 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF585B-203 - 583 4.4e-14 51.8 72.7 9 19 0.03 19 4.9 0.1 3 13 280 290 278 299 0.79 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF585B-203 - 583 4.4e-14 51.8 72.7 10 19 0.00094 0.6 9.8 0.1 2 21 307 327 306 327 0.86 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF585B-203 - 583 4.4e-14 51.8 72.7 11 19 0.31 2e+02 1.7 0.1 3 13 336 346 334 355 0.83 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF585B-203 - 583 4.4e-14 51.8 72.7 12 19 0.045 29 4.4 0.2 2 13 363 374 362 379 0.85 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF585B-203 - 583 4.4e-14 51.8 72.7 13 19 0.052 33 4.2 0.1 3 12 392 401 390 411 0.78 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF585B-203 - 583 4.4e-14 51.8 72.7 14 19 0.0036 2.3 7.9 0.1 3 18 420 436 418 439 0.78 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF585B-203 - 583 4.4e-14 51.8 72.7 15 19 0.0055 3.5 7.3 0.1 3 13 448 458 446 467 0.82 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF585B-203 - 583 4.4e-14 51.8 72.7 16 19 0.0019 1.2 8.8 0.4 3 20 476 494 474 495 0.82 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF585B-203 - 583 4.4e-14 51.8 72.7 17 19 0.0024 1.5 8.4 0.2 3 21 504 523 502 523 0.85 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF585B-203 - 583 4.4e-14 51.8 72.7 18 19 0.0039 2.5 7.8 0.1 3 15 532 544 530 551 0.77 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF585B-203 - 583 4.4e-14 51.8 72.7 19 19 0.9 5.7e+02 0.2 0.2 3 12 560 569 558 573 0.85 Ubiquitin-Binding Zinc Finger C1_4 PF07975.12 55 ZNF585B-203 - 583 2e-12 47.2 78.1 1 13 3.5e-05 0.023 14.9 0.1 19 49 21 51 8 54 0.84 TFIIH C1-like domain C1_4 PF07975.12 55 ZNF585B-203 - 583 2e-12 47.2 78.1 2 13 0.0084 5.4 7.3 1.4 1 49 57 107 57 109 0.82 TFIIH C1-like domain C1_4 PF07975.12 55 ZNF585B-203 - 583 2e-12 47.2 78.1 3 13 0.00084 0.54 10.5 1.2 2 49 86 135 85 138 0.87 TFIIH C1-like domain C1_4 PF07975.12 55 ZNF585B-203 - 583 2e-12 47.2 78.1 4 13 0.07 45 4.4 0.2 20 49 162 191 140 193 0.78 TFIIH C1-like domain C1_4 PF07975.12 55 ZNF585B-203 - 583 2e-12 47.2 78.1 5 13 0.023 15 5.9 1.1 2 49 170 219 169 223 0.77 TFIIH C1-like domain C1_4 PF07975.12 55 ZNF585B-203 - 583 2e-12 47.2 78.1 6 13 0.039 25 5.2 1.0 1 49 197 247 197 249 0.83 TFIIH C1-like domain C1_4 PF07975.12 55 ZNF585B-203 - 583 2e-12 47.2 78.1 7 13 0.0029 1.8 8.8 1.9 2 49 226 275 225 277 0.86 TFIIH C1-like domain C1_4 PF07975.12 55 ZNF585B-203 - 583 2e-12 47.2 78.1 8 13 0.00051 0.33 11.2 1.7 2 49 282 331 281 334 0.86 TFIIH C1-like domain C1_4 PF07975.12 55 ZNF585B-203 - 583 2e-12 47.2 78.1 9 13 0.0013 0.84 9.9 3.3 1 49 337 387 337 389 0.84 TFIIH C1-like domain C1_4 PF07975.12 55 ZNF585B-203 - 583 2e-12 47.2 78.1 10 13 0.003 1.9 8.8 0.8 2 49 394 443 393 445 0.86 TFIIH C1-like domain C1_4 PF07975.12 55 ZNF585B-203 - 583 2e-12 47.2 78.1 11 13 0.0053 3.4 8.0 1.1 2 49 450 499 449 501 0.80 TFIIH C1-like domain C1_4 PF07975.12 55 ZNF585B-203 - 583 2e-12 47.2 78.1 12 13 0.016 11 6.4 2.8 2 49 478 527 478 529 0.84 TFIIH C1-like domain C1_4 PF07975.12 55 ZNF585B-203 - 583 2e-12 47.2 78.1 13 13 0.016 10 6.4 1.2 2 48 534 582 533 583 0.69 TFIIH C1-like domain DUF3268 PF11672.8 118 ZNF585B-203 - 583 5.8e-12 46.0 65.3 1 12 2.8 1.8e+03 -0.7 0.0 25 37 22 34 13 48 0.80 zinc-finger-containing domain DUF3268 PF11672.8 118 ZNF585B-203 - 583 5.8e-12 46.0 65.3 2 12 0.00042 0.27 11.6 0.4 3 38 56 91 54 103 0.89 zinc-finger-containing domain DUF3268 PF11672.8 118 ZNF585B-203 - 583 5.8e-12 46.0 65.3 3 12 0.03 19 5.6 0.3 2 36 111 145 110 155 0.87 zinc-finger-containing domain DUF3268 PF11672.8 118 ZNF585B-203 - 583 5.8e-12 46.0 65.3 4 12 0.00053 0.34 11.3 0.8 2 37 167 202 166 207 0.91 zinc-finger-containing domain DUF3268 PF11672.8 118 ZNF585B-203 - 583 5.8e-12 46.0 65.3 5 12 0.00071 0.46 10.8 0.9 2 38 195 232 194 244 0.88 zinc-finger-containing domain DUF3268 PF11672.8 118 ZNF585B-203 - 583 5.8e-12 46.0 65.3 6 12 0.00021 0.13 12.6 1.1 2 38 251 287 250 294 0.90 zinc-finger-containing domain DUF3268 PF11672.8 118 ZNF585B-203 - 583 5.8e-12 46.0 65.3 7 12 0.0018 1.2 9.5 1.5 4 38 281 315 281 334 0.89 zinc-finger-containing domain DUF3268 PF11672.8 118 ZNF585B-203 - 583 5.8e-12 46.0 65.3 8 12 0.00054 0.34 11.2 1.7 2 38 335 371 334 384 0.92 zinc-finger-containing domain DUF3268 PF11672.8 118 ZNF585B-203 - 583 5.8e-12 46.0 65.3 9 12 0.01 6.6 7.1 1.0 5 38 366 400 366 416 0.86 zinc-finger-containing domain DUF3268 PF11672.8 118 ZNF585B-203 - 583 5.8e-12 46.0 65.3 10 12 0.0051 3.3 8.1 0.7 2 39 391 428 390 437 0.77 zinc-finger-containing domain DUF3268 PF11672.8 118 ZNF585B-203 - 583 5.8e-12 46.0 65.3 11 12 0.0026 1.7 9.0 1.0 2 41 447 486 446 496 0.89 zinc-finger-containing domain DUF3268 PF11672.8 118 ZNF585B-203 - 583 5.8e-12 46.0 65.3 12 12 0.00032 0.21 11.9 1.0 2 40 503 541 502 558 0.86 zinc-finger-containing domain zinc_ribbon_15 PF17032.5 86 ZNF585B-203 - 583 2.4e-11 44.2 75.9 1 14 0.00074 0.48 11.2 0.7 31 78 21 68 18 71 0.84 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF585B-203 - 583 2.4e-11 44.2 75.9 2 14 0.0042 2.7 8.8 0.9 31 77 77 123 70 127 0.85 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF585B-203 - 583 2.4e-11 44.2 75.9 3 14 0.52 3.4e+02 2.1 4.5 40 75 114 177 107 183 0.55 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF585B-203 - 583 2.4e-11 44.2 75.9 4 14 0.0055 3.5 8.4 0.6 31 74 189 232 183 242 0.83 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF585B-203 - 583 2.4e-11 44.2 75.9 5 14 0.00064 0.41 11.4 1.0 33 78 247 292 234 298 0.81 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF585B-203 - 583 2.4e-11 44.2 75.9 6 14 0.0012 0.74 10.6 5.3 32 78 274 320 254 326 0.86 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF585B-203 - 583 2.4e-11 44.2 75.9 7 14 0.001 0.66 10.8 2.6 30 79 300 349 292 353 0.87 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF585B-203 - 583 2.4e-11 44.2 75.9 8 14 0.0006 0.38 11.5 2.9 30 78 328 376 323 379 0.83 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF585B-203 - 583 2.4e-11 44.2 75.9 9 14 0.0052 3.3 8.5 1.1 30 78 384 432 376 435 0.80 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF585B-203 - 583 2.4e-11 44.2 75.9 10 14 0.002 1.3 9.8 0.9 25 76 407 458 402 466 0.86 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF585B-203 - 583 2.4e-11 44.2 75.9 11 14 0.00026 0.16 12.7 1.2 34 79 444 489 436 494 0.85 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF585B-203 - 583 2.4e-11 44.2 75.9 12 14 0.0021 1.4 9.7 2.9 34 79 472 517 465 521 0.85 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF585B-203 - 583 2.4e-11 44.2 75.9 13 14 0.0015 0.94 10.3 2.2 30 78 496 544 491 553 0.85 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF585B-203 - 583 2.4e-11 44.2 75.9 14 14 0.0049 3.1 8.6 1.1 33 78 527 572 518 577 0.83 zinc-ribbon family zf-trcl PF13451.6 48 ZNF585B-203 - 583 5.5e-10 39.0 71.1 1 18 0.62 4e+02 1.0 0.1 4 15 27 38 25 42 0.80 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF585B-203 - 583 5.5e-10 39.0 71.1 2 18 0.088 57 3.7 0.5 4 15 55 66 53 68 0.85 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF585B-203 - 583 5.5e-10 39.0 71.1 3 18 0.25 1.6e+02 2.3 0.1 4 15 83 94 81 97 0.88 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF585B-203 - 583 5.5e-10 39.0 71.1 4 18 0.041 26 4.8 0.0 3 15 110 122 108 130 0.86 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF585B-203 - 583 5.5e-10 39.0 71.1 5 18 0.022 14 5.7 0.1 3 16 166 179 164 182 0.84 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF585B-203 - 583 5.5e-10 39.0 71.1 6 18 0.025 16 5.5 0.1 3 15 194 206 192 209 0.89 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF585B-203 - 583 5.5e-10 39.0 71.1 7 18 0.47 3e+02 1.4 0.1 3 15 222 234 221 238 0.86 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF585B-203 - 583 5.5e-10 39.0 71.1 8 18 0.026 17 5.4 1.5 4 42 251 288 248 293 0.56 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF585B-203 - 583 5.5e-10 39.0 71.1 9 18 0.078 50 3.9 0.1 3 15 306 318 304 320 0.89 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF585B-203 - 583 5.5e-10 39.0 71.1 10 18 0.17 1.1e+02 2.8 0.1 3 15 334 346 332 349 0.87 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF585B-203 - 583 5.5e-10 39.0 71.1 11 18 0.32 2.1e+02 1.9 0.3 4 14 363 373 361 374 0.85 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF585B-203 - 583 5.5e-10 39.0 71.1 12 18 0.014 8.7 6.3 0.1 3 15 390 402 388 405 0.91 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF585B-203 - 583 5.5e-10 39.0 71.1 13 18 0.014 9.3 6.2 0.1 3 15 418 430 416 434 0.88 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF585B-203 - 583 5.5e-10 39.0 71.1 14 18 0.04 26 4.8 0.1 3 14 446 457 444 458 0.89 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF585B-203 - 583 5.5e-10 39.0 71.1 15 18 0.063 40 4.2 0.1 3 14 474 485 472 486 0.90 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF585B-203 - 583 5.5e-10 39.0 71.1 16 18 0.014 8.7 6.3 0.1 3 15 502 514 500 522 0.87 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF585B-203 - 583 5.5e-10 39.0 71.1 17 18 0.039 25 4.9 0.1 3 14 530 541 528 543 0.90 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF585B-203 - 583 5.5e-10 39.0 71.1 18 18 0.058 37 4.3 0.1 2 15 557 570 556 579 0.91 Probable zinc-ribbon domain zf-met PF12874.7 25 ZNF585B-203 - 583 1.2e-09 38.3 110.4 1 19 0.059 38 4.9 0.1 1 21 28 48 28 51 0.91 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF585B-203 - 583 1.2e-09 38.3 110.4 2 19 0.044 28 5.3 0.9 2 21 57 76 56 79 0.90 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF585B-203 - 583 1.2e-09 38.3 110.4 3 19 0.0046 3 8.4 1.2 1 21 112 132 112 134 0.90 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF585B-203 - 583 1.2e-09 38.3 110.4 4 19 1.3 8.1e+02 0.6 0.0 8 21 147 160 146 162 0.89 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF585B-203 - 583 1.2e-09 38.3 110.4 5 19 0.16 1e+02 3.5 0.1 3 21 170 188 168 191 0.90 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF585B-203 - 583 1.2e-09 38.3 110.4 6 19 0.36 2.3e+02 2.4 0.2 1 21 196 216 196 219 0.88 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF585B-203 - 583 1.2e-09 38.3 110.4 7 19 0.0015 0.94 10.0 1.8 1 21 252 272 252 275 0.90 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF585B-203 - 583 1.2e-09 38.3 110.4 8 19 0.025 16 6.0 0.4 1 21 280 300 280 303 0.87 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF585B-203 - 583 1.2e-09 38.3 110.4 9 19 0.18 1.1e+02 3.3 0.1 1 21 308 328 308 331 0.87 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF585B-203 - 583 1.2e-09 38.3 110.4 10 19 0.0043 2.7 8.5 0.9 1 21 336 356 336 359 0.91 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF585B-203 - 583 1.2e-09 38.3 110.4 11 19 0.1 64 4.1 0.2 7 23 355 371 355 372 0.91 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF585B-203 - 583 1.2e-09 38.3 110.4 12 19 0.58 3.7e+02 1.7 0.1 1 20 364 383 364 386 0.86 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF585B-203 - 583 1.2e-09 38.3 110.4 13 19 0.053 34 5.0 0.2 1 21 392 412 392 415 0.91 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF585B-203 - 583 1.2e-09 38.3 110.4 14 19 0.00012 0.079 13.4 0.4 1 19 420 438 420 439 0.94 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF585B-203 - 583 1.2e-09 38.3 110.4 15 19 0.016 10 6.7 0.5 1 21 448 468 448 471 0.91 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF585B-203 - 583 1.2e-09 38.3 110.4 16 19 0.098 62 4.2 0.2 1 19 476 494 476 497 0.93 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF585B-203 - 583 1.2e-09 38.3 110.4 17 19 0.00032 0.2 12.1 0.9 1 21 504 524 504 527 0.91 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF585B-203 - 583 1.2e-09 38.3 110.4 18 19 0.011 7.4 7.1 0.8 1 19 532 550 532 554 0.93 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF585B-203 - 583 1.2e-09 38.3 110.4 19 19 0.029 18 5.9 0.8 1 23 560 582 560 583 0.92 Zinc-finger of C2H2 type XPA_N PF01286.18 32 ZNF585B-203 - 583 2.1e-08 34.1 66.6 1 19 0.067 43 4.3 0.1 3 11 29 37 28 39 0.89 XPA protein N-terminal XPA_N PF01286.18 32 ZNF585B-203 - 583 2.1e-08 34.1 66.6 2 19 0.064 41 4.3 0.4 3 12 57 66 55 69 0.88 XPA protein N-terminal XPA_N PF01286.18 32 ZNF585B-203 - 583 2.1e-08 34.1 66.6 3 19 0.069 44 4.2 0.1 3 12 85 94 84 96 0.88 XPA protein N-terminal XPA_N PF01286.18 32 ZNF585B-203 - 583 2.1e-08 34.1 66.6 4 19 0.23 1.5e+02 2.6 0.1 3 12 113 122 111 129 0.84 XPA protein N-terminal XPA_N PF01286.18 32 ZNF585B-203 - 583 2.1e-08 34.1 66.6 5 19 0.037 24 5.1 0.1 3 12 169 178 167 179 0.88 XPA protein N-terminal XPA_N PF01286.18 32 ZNF585B-203 - 583 2.1e-08 34.1 66.6 6 19 0.22 1.4e+02 2.6 0.1 3 12 197 206 195 210 0.89 XPA protein N-terminal XPA_N PF01286.18 32 ZNF585B-203 - 583 2.1e-08 34.1 66.6 7 19 1.7 1.1e+03 -0.2 0.0 3 11 225 233 224 235 0.84 XPA protein N-terminal XPA_N PF01286.18 32 ZNF585B-203 - 583 2.1e-08 34.1 66.6 8 19 0.51 3.3e+02 1.4 0.1 3 12 253 262 251 267 0.86 XPA protein N-terminal XPA_N PF01286.18 32 ZNF585B-203 - 583 2.1e-08 34.1 66.6 9 19 0.054 35 4.6 0.0 3 12 281 290 279 298 0.85 XPA protein N-terminal XPA_N PF01286.18 32 ZNF585B-203 - 583 2.1e-08 34.1 66.6 10 19 0.096 61 3.8 0.0 3 12 309 318 308 325 0.90 XPA protein N-terminal XPA_N PF01286.18 32 ZNF585B-203 - 583 2.1e-08 34.1 66.6 11 19 0.21 1.4e+02 2.7 0.2 3 12 337 346 335 348 0.88 XPA protein N-terminal XPA_N PF01286.18 32 ZNF585B-203 - 583 2.1e-08 34.1 66.6 12 19 0.022 14 5.8 0.2 3 12 365 374 363 379 0.88 XPA protein N-terminal XPA_N PF01286.18 32 ZNF585B-203 - 583 2.1e-08 34.1 66.6 13 19 0.15 98 3.1 0.0 3 11 393 401 391 403 0.88 XPA protein N-terminal XPA_N PF01286.18 32 ZNF585B-203 - 583 2.1e-08 34.1 66.6 14 19 0.057 36 4.5 0.2 3 12 421 430 419 438 0.79 XPA protein N-terminal XPA_N PF01286.18 32 ZNF585B-203 - 583 2.1e-08 34.1 66.6 15 19 0.034 22 5.2 0.0 3 12 449 458 447 466 0.84 XPA protein N-terminal XPA_N PF01286.18 32 ZNF585B-203 - 583 2.1e-08 34.1 66.6 16 19 0.028 18 5.5 0.1 3 12 477 486 475 495 0.84 XPA protein N-terminal XPA_N PF01286.18 32 ZNF585B-203 - 583 2.1e-08 34.1 66.6 17 19 0.078 50 4.1 0.2 3 12 505 514 503 521 0.85 XPA protein N-terminal XPA_N PF01286.18 32 ZNF585B-203 - 583 2.1e-08 34.1 66.6 18 19 0.035 22 5.2 0.0 3 12 533 542 531 545 0.88 XPA protein N-terminal XPA_N PF01286.18 32 ZNF585B-203 - 583 2.1e-08 34.1 66.6 19 19 4.2 2.7e+03 -1.5 0.1 3 11 561 569 560 571 0.83 XPA protein N-terminal ADK_lid PF05191.14 36 ZNF585B-203 - 583 8.4e-08 32.1 55.3 1 11 0.095 61 3.7 0.9 4 33 58 95 29 97 0.72 Adenylate kinase, active site lid ADK_lid PF05191.14 36 ZNF585B-203 - 583 8.4e-08 32.1 55.3 2 11 0.019 12 5.9 0.2 4 34 114 180 112 182 0.61 Adenylate kinase, active site lid ADK_lid PF05191.14 36 ZNF585B-203 - 583 8.4e-08 32.1 55.3 3 11 0.058 37 4.4 0.1 4 32 198 234 196 237 0.72 Adenylate kinase, active site lid ADK_lid PF05191.14 36 ZNF585B-203 - 583 8.4e-08 32.1 55.3 4 11 0.033 21 5.2 3.2 4 35 254 293 224 293 0.78 Adenylate kinase, active site lid ADK_lid PF05191.14 36 ZNF585B-203 - 583 8.4e-08 32.1 55.3 5 11 2.3e-06 0.0015 18.5 0.4 3 36 281 322 279 322 0.84 Adenylate kinase, active site lid ADK_lid PF05191.14 36 ZNF585B-203 - 583 8.4e-08 32.1 55.3 6 11 2.5 1.6e+03 -0.8 0.0 24 33 338 347 334 351 0.70 Adenylate kinase, active site lid ADK_lid PF05191.14 36 ZNF585B-203 - 583 8.4e-08 32.1 55.3 7 11 0.0089 5.7 7.0 0.8 4 33 366 403 364 405 0.74 Adenylate kinase, active site lid ADK_lid PF05191.14 36 ZNF585B-203 - 583 8.4e-08 32.1 55.3 8 11 0.0078 5 7.2 0.3 4 31 422 457 420 461 0.68 Adenylate kinase, active site lid ADK_lid PF05191.14 36 ZNF585B-203 - 583 8.4e-08 32.1 55.3 9 11 0.0021 1.3 9.0 2.1 3 33 449 487 448 489 0.82 Adenylate kinase, active site lid ADK_lid PF05191.14 36 ZNF585B-203 - 583 8.4e-08 32.1 55.3 10 11 0.053 34 4.5 1.7 3 31 477 513 475 517 0.70 Adenylate kinase, active site lid ADK_lid PF05191.14 36 ZNF585B-203 - 583 8.4e-08 32.1 55.3 11 11 0.047 30 4.7 6.1 3 33 533 571 504 573 0.69 Adenylate kinase, active site lid # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF585B-203.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF585B-203.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF585B-203.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF585B-203.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF585B-203.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:10:12 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZNF585B-204 - 714 5.2e-147 472.4 128.3 1 23 2.5 1.8e+03 -0.4 0.1 11 18 71 78 69 85 0.79 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF585B-204 - 714 5.2e-147 472.4 128.3 2 23 5.4e-05 0.039 14.4 0.0 3 25 91 113 89 114 0.89 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF585B-204 - 714 5.2e-147 472.4 128.3 3 23 4e-07 0.00028 21.1 3.0 5 24 121 140 118 142 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF585B-204 - 714 5.2e-147 472.4 128.3 4 23 5.2e-09 3.7e-06 27.1 1.7 2 24 146 168 145 170 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF585B-204 - 714 5.2e-147 472.4 128.3 5 23 1.5e-08 1.1e-05 25.7 0.8 2 25 174 197 173 198 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF585B-204 - 714 5.2e-147 472.4 128.3 6 23 1.8e-05 0.013 15.9 0.0 2 24 202 224 201 226 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF585B-204 - 714 5.2e-147 472.4 128.3 7 23 1.3e-09 9.6e-07 29.0 0.1 2 24 230 252 229 254 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF585B-204 - 714 5.2e-147 472.4 128.3 8 23 3.6e-05 0.026 14.9 0.1 2 26 258 282 257 282 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF585B-204 - 714 5.2e-147 472.4 128.3 9 23 0.088 63 4.3 0.1 17 25 301 309 285 310 0.76 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF585B-204 - 714 5.2e-147 472.4 128.3 10 23 2.8e-10 2e-07 31.1 0.1 5 25 317 337 313 338 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF585B-204 - 714 5.2e-147 472.4 128.3 11 23 1.8e-06 0.0013 19.1 0.0 1 24 341 364 341 366 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF585B-204 - 714 5.2e-147 472.4 128.3 12 23 2.5e-08 1.8e-05 25.0 1.5 2 26 370 394 369 394 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF585B-204 - 714 5.2e-147 472.4 128.3 13 23 8.1e-10 5.8e-07 29.6 2.1 5 26 401 422 398 422 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF585B-204 - 714 5.2e-147 472.4 128.3 14 23 1.8e-08 1.3e-05 25.4 0.5 1 25 425 449 425 450 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF585B-204 - 714 5.2e-147 472.4 128.3 15 23 5.4e-11 3.9e-08 33.4 0.2 2 25 454 477 453 478 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF585B-204 - 714 5.2e-147 472.4 128.3 16 23 6.1e-10 4.4e-07 30.0 0.4 1 25 481 505 481 506 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF585B-204 - 714 5.2e-147 472.4 128.3 17 23 1e-08 7.4e-06 26.2 0.1 5 24 513 532 510 534 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF585B-204 - 714 5.2e-147 472.4 128.3 18 23 2.9e-11 2.1e-08 34.2 0.5 4 26 540 562 537 562 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF585B-204 - 714 5.2e-147 472.4 128.3 19 23 1.4e-07 0.0001 22.5 0.2 5 25 569 589 566 589 0.89 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF585B-204 - 714 5.2e-147 472.4 128.3 20 23 1.6e-10 1.1e-07 31.9 1.0 1 25 593 617 593 618 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF585B-204 - 714 5.2e-147 472.4 128.3 21 23 3.3e-10 2.4e-07 30.9 1.4 3 26 623 646 621 646 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF585B-204 - 714 5.2e-147 472.4 128.3 22 23 1.4e-10 1e-07 32.0 0.1 2 26 650 674 649 674 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF585B-204 - 714 5.2e-147 472.4 128.3 23 23 1.1e-09 8.2e-07 29.2 0.2 1 25 677 701 677 702 0.96 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZNF585B-204 - 714 1e-130 419.4 138.9 1 23 0.29 2.1e+02 2.7 0.0 7 21 81 95 75 96 0.89 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF585B-204 - 714 1e-130 419.4 138.9 2 23 4.3e-05 0.031 14.7 0.1 1 23 103 125 103 125 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF585B-204 - 714 1e-130 419.4 138.9 3 23 3.5e-07 0.00025 21.3 3.7 1 23 131 153 131 153 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF585B-204 - 714 1e-130 419.4 138.9 4 23 1.1e-06 0.00076 19.8 0.1 1 23 159 181 159 181 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF585B-204 - 714 1e-130 419.4 138.9 5 23 1.8e-08 1.3e-05 25.4 1.4 1 23 187 209 187 209 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF585B-204 - 714 1e-130 419.4 138.9 6 23 5.7e-05 0.041 14.4 0.1 1 23 215 237 215 237 0.93 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF585B-204 - 714 1e-130 419.4 138.9 7 23 1.2e-09 8.8e-07 29.0 0.5 1 23 243 265 243 265 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF585B-204 - 714 1e-130 419.4 138.9 8 23 0.0039 2.8 8.6 0.0 6 21 273 291 270 292 0.80 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF585B-204 - 714 1e-130 419.4 138.9 9 23 1.8e-07 0.00013 22.2 0.1 3 23 301 321 300 321 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF585B-204 - 714 1e-130 419.4 138.9 10 23 1.4e-09 9.8e-07 28.9 0.2 1 23 327 349 327 349 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF585B-204 - 714 1e-130 419.4 138.9 11 23 5.7e-06 0.0041 17.5 0.3 1 23 355 377 355 377 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF585B-204 - 714 1e-130 419.4 138.9 12 23 6.6e-07 0.00048 20.4 4.7 1 23 383 405 383 405 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF585B-204 - 714 1e-130 419.4 138.9 13 23 1.3e-09 9.5e-07 28.9 1.0 1 23 411 433 411 433 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF585B-204 - 714 1e-130 419.4 138.9 14 23 1.2e-08 8.3e-06 26.0 0.4 1 23 439 461 439 461 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF585B-204 - 714 1e-130 419.4 138.9 15 23 3.3e-09 2.4e-06 27.7 0.5 1 23 467 489 467 489 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF585B-204 - 714 1e-130 419.4 138.9 16 23 2.9e-07 0.00021 21.6 0.4 1 23 495 517 495 517 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF585B-204 - 714 1e-130 419.4 138.9 17 23 8.7e-09 6.2e-06 26.4 0.4 1 23 523 545 523 545 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF585B-204 - 714 1e-130 419.4 138.9 18 23 3.9e-08 2.8e-05 24.3 0.4 1 20 551 570 551 573 0.94 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF585B-204 - 714 1e-130 419.4 138.9 19 23 1.7e-08 1.2e-05 25.5 0.3 1 23 579 601 579 601 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF585B-204 - 714 1e-130 419.4 138.9 20 23 3.1e-08 2.2e-05 24.6 1.7 1 23 607 629 607 629 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF585B-204 - 714 1e-130 419.4 138.9 21 23 3.7e-10 2.7e-07 30.7 0.9 1 23 635 657 635 657 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF585B-204 - 714 1e-130 419.4 138.9 22 23 3.7e-09 2.7e-06 27.5 0.5 1 23 663 685 663 685 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF585B-204 - 714 1e-130 419.4 138.9 23 23 1.8e-06 0.0013 19.1 0.3 1 23 691 713 691 713 0.98 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZNF585B-204 - 714 1.7e-71 230.6 134.0 1 23 4 2.8e+03 -0.3 0.0 7 21 81 95 75 97 0.77 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF585B-204 - 714 1.7e-71 230.6 134.0 2 23 0.00011 0.082 13.8 0.2 1 23 103 125 103 126 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF585B-204 - 714 1.7e-71 230.6 134.0 3 23 7.9e-05 0.056 14.3 3.0 1 23 131 153 131 154 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF585B-204 - 714 1.7e-71 230.6 134.0 4 23 4.6e-05 0.033 15.0 0.1 1 23 159 181 159 182 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF585B-204 - 714 1.7e-71 230.6 134.0 5 23 5.8e-05 0.042 14.7 1.0 1 23 187 209 187 210 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF585B-204 - 714 1.7e-71 230.6 134.0 6 23 0.00035 0.25 12.3 0.1 1 23 215 237 215 238 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF585B-204 - 714 1.7e-71 230.6 134.0 7 23 6.2e-06 0.0044 17.7 0.6 1 23 243 265 243 266 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF585B-204 - 714 1.7e-71 230.6 134.0 8 23 0.18 1.3e+02 3.8 0.0 6 21 273 291 271 294 0.80 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF585B-204 - 714 1.7e-71 230.6 134.0 9 23 0.00042 0.3 12.0 0.1 2 23 300 321 299 322 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF585B-204 - 714 1.7e-71 230.6 134.0 10 23 2.6e-05 0.019 15.8 0.2 1 23 327 349 327 350 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF585B-204 - 714 1.7e-71 230.6 134.0 11 23 0.0082 5.8 8.0 0.2 1 23 355 377 355 378 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF585B-204 - 714 1.7e-71 230.6 134.0 12 23 1.4e-05 0.01 16.6 3.7 1 23 383 405 383 406 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF585B-204 - 714 1.7e-71 230.6 134.0 13 23 8.2e-06 0.0059 17.3 0.5 1 23 411 433 411 434 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF585B-204 - 714 1.7e-71 230.6 134.0 14 23 3e-05 0.022 15.6 0.3 1 23 439 461 439 462 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF585B-204 - 714 1.7e-71 230.6 134.0 15 23 0.00018 0.13 13.2 0.3 1 23 467 489 467 490 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF585B-204 - 714 1.7e-71 230.6 134.0 16 23 0.00017 0.12 13.2 0.5 1 23 495 517 495 518 0.89 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF585B-204 - 714 1.7e-71 230.6 134.0 17 23 0.00013 0.095 13.6 0.3 1 23 523 545 523 546 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF585B-204 - 714 1.7e-71 230.6 134.0 18 23 4.8e-06 0.0035 18.1 0.5 1 21 551 571 551 574 0.90 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF585B-204 - 714 1.7e-71 230.6 134.0 19 23 1.2e-05 0.0084 16.9 0.4 1 23 579 601 579 602 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF585B-204 - 714 1.7e-71 230.6 134.0 20 23 1.1e-05 0.0082 16.9 1.1 1 23 607 629 607 630 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF585B-204 - 714 1.7e-71 230.6 134.0 21 23 3.7e-06 0.0027 18.4 0.8 1 23 635 657 635 658 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF585B-204 - 714 1.7e-71 230.6 134.0 22 23 2.8e-05 0.02 15.7 0.4 1 23 663 685 663 686 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF585B-204 - 714 1.7e-71 230.6 134.0 23 23 0.00012 0.084 13.8 0.3 1 23 691 713 691 714 0.94 C2H2-type zinc finger Zn-ribbon_8 PF09723.10 40 ZNF585B-204 - 714 1.7e-25 88.9 94.6 1 18 0.16 1.2e+02 2.9 0.4 6 34 75 110 74 116 0.53 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF585B-204 - 714 1.7e-25 88.9 94.6 2 18 0.0062 4.5 7.5 3.1 6 34 103 138 101 144 0.79 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF585B-204 - 714 1.7e-25 88.9 94.6 3 18 0.0038 2.7 8.2 5.9 6 34 131 166 130 169 0.82 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF585B-204 - 714 1.7e-25 88.9 94.6 4 18 0.07 50 4.1 0.8 6 15 159 168 158 180 0.90 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF585B-204 - 714 1.7e-25 88.9 94.6 5 18 0.00035 0.25 11.5 1.1 7 34 188 222 186 228 0.90 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF585B-204 - 714 1.7e-25 88.9 94.6 6 18 0.014 10 6.4 1.3 6 17 243 260 242 275 0.70 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF585B-204 - 714 1.7e-25 88.9 94.6 7 18 0.035 25 5.1 0.4 6 35 271 307 270 312 0.62 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF585B-204 - 714 1.7e-25 88.9 94.6 8 18 2.3e-05 0.016 15.3 0.6 6 34 327 362 326 368 0.91 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF585B-204 - 714 1.7e-25 88.9 94.6 9 18 5e-05 0.036 14.2 0.8 6 35 383 419 382 424 0.86 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF585B-204 - 714 1.7e-25 88.9 94.6 10 18 3.4e-05 0.024 14.7 1.0 6 37 411 449 410 452 0.87 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF585B-204 - 714 1.7e-25 88.9 94.6 11 18 3.8e-05 0.027 14.6 1.6 6 36 439 476 437 480 0.89 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF585B-204 - 714 1.7e-25 88.9 94.6 12 18 0.012 8.8 6.5 0.3 6 17 467 478 466 488 0.83 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF585B-204 - 714 1.7e-25 88.9 94.6 13 18 6e-07 0.00043 20.3 1.2 5 35 494 531 494 535 0.90 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF585B-204 - 714 1.7e-25 88.9 94.6 14 18 1.2e-05 0.0085 16.2 2.2 6 34 551 586 550 591 0.92 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF585B-204 - 714 1.7e-25 88.9 94.6 15 18 1.6e-05 0.011 15.8 1.8 6 38 579 618 578 620 0.92 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF585B-204 - 714 1.7e-25 88.9 94.6 16 18 5.1e-06 0.0037 17.4 2.4 6 35 635 671 634 675 0.92 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF585B-204 - 714 1.7e-25 88.9 94.6 17 18 0.00053 0.38 10.9 1.7 6 38 663 703 661 705 0.87 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF585B-204 - 714 1.7e-25 88.9 94.6 18 18 0.29 2e+02 2.2 0.1 6 16 691 701 690 711 0.85 Zinc ribbon domain zf-C2H2_6 PF13912.6 27 ZNF585B-204 - 714 2e-20 72.3 134.0 1 22 0.03 21 5.2 0.1 2 26 103 127 102 128 0.90 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF585B-204 - 714 2e-20 72.3 134.0 2 22 0.0022 1.6 8.9 1.8 2 11 131 140 131 153 0.83 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF585B-204 - 714 2e-20 72.3 134.0 3 22 0.00013 0.093 12.8 0.2 2 13 159 170 158 181 0.86 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF585B-204 - 714 2e-20 72.3 134.0 4 22 0.012 8.7 6.5 0.6 1 11 186 196 186 198 0.92 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF585B-204 - 714 2e-20 72.3 134.0 5 22 0.29 2.1e+02 2.1 0.1 2 24 215 237 214 240 0.84 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF585B-204 - 714 2e-20 72.3 134.0 6 22 0.015 11 6.2 0.8 2 11 243 252 243 256 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF585B-204 - 714 2e-20 72.3 134.0 7 22 1.2 8.4e+02 0.2 0.0 2 20 271 289 271 291 0.86 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF585B-204 - 714 2e-20 72.3 134.0 8 22 0.0034 2.4 8.2 0.1 3 20 300 317 300 323 0.79 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF585B-204 - 714 2e-20 72.3 134.0 9 22 0.052 37 4.5 0.2 2 20 327 345 327 351 0.80 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF585B-204 - 714 2e-20 72.3 134.0 10 22 3.7 2.7e+03 -1.5 0.1 2 11 355 364 354 374 0.79 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF585B-204 - 714 2e-20 72.3 134.0 11 22 0.62 4.4e+02 1.0 3.5 2 22 383 403 383 407 0.81 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF585B-204 - 714 2e-20 72.3 134.0 12 22 0.0001 0.073 13.1 0.6 2 24 411 433 411 436 0.95 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF585B-204 - 714 2e-20 72.3 134.0 13 22 0.00088 0.63 10.1 0.2 2 24 439 461 438 464 0.87 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF585B-204 - 714 2e-20 72.3 134.0 14 22 0.0015 1.1 9.4 0.5 2 21 467 486 467 491 0.79 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF585B-204 - 714 2e-20 72.3 134.0 15 22 0.0016 1.2 9.2 0.7 2 12 495 505 494 506 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF585B-204 - 714 2e-20 72.3 134.0 16 22 0.029 21 5.3 0.2 2 11 523 532 523 543 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF585B-204 - 714 2e-20 72.3 134.0 17 22 0.0041 3 8.0 1.6 2 13 551 562 551 563 0.96 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF585B-204 - 714 2e-20 72.3 134.0 18 22 0.0014 1 9.5 1.2 2 24 579 601 579 604 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF585B-204 - 714 2e-20 72.3 134.0 19 22 7.6e-05 0.055 13.5 0.9 2 22 607 627 607 631 0.88 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF585B-204 - 714 2e-20 72.3 134.0 20 22 0.011 7.5 6.7 1.4 2 12 635 645 635 647 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF585B-204 - 714 2e-20 72.3 134.0 21 22 0.00027 0.2 11.7 0.8 2 24 663 685 663 687 0.96 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF585B-204 - 714 2e-20 72.3 134.0 22 22 0.13 93 3.2 0.2 2 11 691 700 691 701 0.93 C2H2-type zinc finger DZR PF12773.7 49 ZNF585B-204 - 714 1.3e-15 57.2 77.4 1 4 0.62 4.4e+02 1.0 15.8 1 39 189 253 93 258 0.77 Double zinc ribbon DZR PF12773.7 49 ZNF585B-204 - 714 1.3e-15 57.2 77.4 2 4 0.028 20 5.3 10.2 1 40 329 394 289 429 0.56 Double zinc ribbon DZR PF12773.7 49 ZNF585B-204 - 714 1.3e-15 57.2 77.4 3 4 1.4 9.8e+02 -0.1 19.7 1 48 469 556 413 565 0.57 Double zinc ribbon DZR PF12773.7 49 ZNF585B-204 - 714 1.3e-15 57.2 77.4 4 4 0.5 3.6e+02 1.3 18.4 1 49 581 669 541 706 0.75 Double zinc ribbon DUF3268 PF11672.8 118 ZNF585B-204 - 714 3.5e-13 49.9 72.8 1 14 0.025 18 5.7 0.1 3 39 75 112 73 125 0.85 zinc-finger-containing domain DUF3268 PF11672.8 118 ZNF585B-204 - 714 3.5e-13 49.9 72.8 2 14 0.0099 7.1 7.0 0.5 2 37 130 165 129 175 0.86 zinc-finger-containing domain DUF3268 PF11672.8 118 ZNF585B-204 - 714 3.5e-13 49.9 72.8 3 14 0.00048 0.35 11.2 0.4 3 38 187 222 185 234 0.89 zinc-finger-containing domain DUF3268 PF11672.8 118 ZNF585B-204 - 714 3.5e-13 49.9 72.8 4 14 0.035 25 5.2 0.3 2 36 242 276 241 286 0.87 zinc-finger-containing domain DUF3268 PF11672.8 118 ZNF585B-204 - 714 3.5e-13 49.9 72.8 5 14 0.00062 0.44 10.9 0.7 2 37 298 333 297 337 0.92 zinc-finger-containing domain DUF3268 PF11672.8 118 ZNF585B-204 - 714 3.5e-13 49.9 72.8 6 14 0.00087 0.63 10.4 0.9 2 37 326 361 325 373 0.88 zinc-finger-containing domain DUF3268 PF11672.8 118 ZNF585B-204 - 714 3.5e-13 49.9 72.8 7 14 0.00022 0.16 12.3 1.0 2 38 382 418 381 425 0.90 zinc-finger-containing domain DUF3268 PF11672.8 118 ZNF585B-204 - 714 3.5e-13 49.9 72.8 8 14 0.0057 4.1 7.8 1.7 5 38 413 446 413 453 0.89 zinc-finger-containing domain DUF3268 PF11672.8 118 ZNF585B-204 - 714 3.5e-13 49.9 72.8 9 14 0.00069 0.49 10.7 1.8 2 38 466 502 464 509 0.92 zinc-finger-containing domain DUF3268 PF11672.8 118 ZNF585B-204 - 714 3.5e-13 49.9 72.8 10 14 0.0046 3.3 8.1 1.5 3 38 495 531 493 544 0.86 zinc-finger-containing domain DUF3268 PF11672.8 118 ZNF585B-204 - 714 3.5e-13 49.9 72.8 11 14 0.0057 4.1 7.8 0.8 2 39 522 559 521 570 0.78 zinc-finger-containing domain DUF3268 PF11672.8 118 ZNF585B-204 - 714 3.5e-13 49.9 72.8 12 14 0.0018 1.3 9.3 0.7 2 38 550 586 549 596 0.88 zinc-finger-containing domain DUF3268 PF11672.8 118 ZNF585B-204 - 714 3.5e-13 49.9 72.8 13 14 0.0032 2.3 8.6 1.0 2 41 578 617 577 624 0.88 zinc-finger-containing domain DUF3268 PF11672.8 118 ZNF585B-204 - 714 3.5e-13 49.9 72.8 14 14 0.0004 0.28 11.5 1.0 2 39 634 671 633 686 0.86 zinc-finger-containing domain zf_UBZ PF18439.1 32 ZNF585B-204 - 714 1.3e-12 47.1 82.0 1 21 0.12 83 2.9 0.1 3 21 103 122 101 122 0.82 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF585B-204 - 714 1.3e-12 47.1 82.0 2 21 0.062 45 3.8 0.3 3 12 131 140 129 143 0.90 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF585B-204 - 714 1.3e-12 47.1 82.0 3 21 0.0065 4.7 6.9 0.1 3 15 159 171 157 178 0.79 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF585B-204 - 714 1.3e-12 47.1 82.0 4 21 0.21 1.5e+02 2.1 0.1 3 12 187 196 185 202 0.83 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF585B-204 - 714 1.3e-12 47.1 82.0 5 21 0.095 68 3.2 0.1 2 15 214 227 213 234 0.75 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF585B-204 - 714 1.3e-12 47.1 82.0 6 21 0.024 17 5.1 0.2 3 21 243 262 241 262 0.85 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF585B-204 - 714 1.3e-12 47.1 82.0 7 21 0.25 1.8e+02 1.8 0.1 4 12 300 308 297 314 0.86 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF585B-204 - 714 1.3e-12 47.1 82.0 8 21 0.066 47 3.7 0.1 3 14 327 338 325 346 0.78 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF585B-204 - 714 1.3e-12 47.1 82.0 9 21 0.59 4.2e+02 0.6 0.0 2 10 354 362 353 373 0.85 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF585B-204 - 714 1.3e-12 47.1 82.0 10 21 0.19 1.4e+02 2.2 0.1 3 14 383 394 381 401 0.82 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF585B-204 - 714 1.3e-12 47.1 82.0 11 21 0.034 24 4.6 0.1 3 13 411 421 409 430 0.79 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF585B-204 - 714 1.3e-12 47.1 82.0 12 21 0.0011 0.75 9.4 0.1 2 21 438 458 437 458 0.86 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF585B-204 - 714 1.3e-12 47.1 82.0 13 21 0.35 2.5e+02 1.4 0.1 3 13 467 477 465 486 0.83 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF585B-204 - 714 1.3e-12 47.1 82.0 14 21 0.051 36 4.1 0.2 2 13 494 505 493 510 0.85 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF585B-204 - 714 1.3e-12 47.1 82.0 15 21 0.058 41 3.9 0.1 3 12 523 532 521 542 0.78 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF585B-204 - 714 1.3e-12 47.1 82.0 16 21 0.0041 2.9 7.6 0.1 3 18 551 567 549 570 0.78 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF585B-204 - 714 1.3e-12 47.1 82.0 17 21 0.0062 4.4 7.0 0.1 3 13 579 589 577 598 0.82 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF585B-204 - 714 1.3e-12 47.1 82.0 18 21 0.0021 1.5 8.4 0.4 3 20 607 625 605 626 0.82 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF585B-204 - 714 1.3e-12 47.1 82.0 19 21 0.0027 1.9 8.1 0.2 3 21 635 654 633 654 0.85 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF585B-204 - 714 1.3e-12 47.1 82.0 20 21 0.0044 3.1 7.5 0.1 3 15 663 675 661 682 0.77 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF585B-204 - 714 1.3e-12 47.1 82.0 21 21 1 7.2e+02 -0.1 0.2 3 12 691 700 689 704 0.85 Ubiquitin-Binding Zinc Finger zinc_ribbon_15 PF17032.5 86 ZNF585B-204 - 714 9.2e-12 45.6 83.9 1 15 0.0022 1.6 9.5 1.5 29 74 94 139 73 146 0.85 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF585B-204 - 714 9.2e-12 45.6 83.9 2 15 0.00059 0.42 11.4 0.7 30 78 151 199 139 203 0.84 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF585B-204 - 714 9.2e-12 45.6 83.9 3 15 0.0046 3.3 8.5 0.9 31 77 208 254 202 261 0.85 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF585B-204 - 714 9.2e-12 45.6 83.9 4 15 0.22 1.6e+02 3.1 3.9 35 75 240 308 231 315 0.63 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF585B-204 - 714 9.2e-12 45.6 83.9 5 15 0.015 11 6.9 3.1 30 78 291 339 266 342 0.85 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF585B-204 - 714 9.2e-12 45.6 83.9 6 15 0.0063 4.5 8.1 0.5 31 74 320 363 314 370 0.83 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF585B-204 - 714 9.2e-12 45.6 83.9 7 15 0.0008 0.57 11.0 0.9 33 78 378 423 367 427 0.81 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF585B-204 - 714 9.2e-12 45.6 83.9 8 15 0.0017 1.2 9.9 5.8 32 78 405 451 383 454 0.82 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF585B-204 - 714 9.2e-12 45.6 83.9 9 15 0.0012 0.85 10.4 2.4 30 79 431 480 425 482 0.86 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF585B-204 - 714 9.2e-12 45.6 83.9 10 15 0.00077 0.55 11.0 3.0 30 78 459 507 454 509 0.83 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF585B-204 - 714 9.2e-12 45.6 83.9 11 15 0.0053 3.8 8.3 1.1 30 78 515 563 503 566 0.81 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF585B-204 - 714 9.2e-12 45.6 83.9 12 15 0.011 7.7 7.3 3.4 25 76 538 589 524 597 0.83 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF585B-204 - 714 9.2e-12 45.6 83.9 13 15 0.0035 2.5 8.9 5.2 38 79 579 620 567 650 0.68 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF585B-204 - 714 9.2e-12 45.6 83.9 14 15 0.001 0.72 10.6 1.4 30 78 627 675 621 678 0.84 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF585B-204 - 714 9.2e-12 45.6 83.9 15 15 0.052 37 5.1 5.0 32 73 657 698 636 707 0.56 zinc-ribbon family zf-C2H2_jaz PF12171.8 27 ZNF585B-204 - 714 1.1e-11 44.7 98.9 1 22 9.9 7.1e+03 -2.5 0.1 15 22 88 95 82 95 0.81 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF585B-204 - 714 1.1e-11 44.7 98.9 2 22 0.95 6.8e+02 0.7 0.2 3 23 104 124 103 126 0.74 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF585B-204 - 714 1.1e-11 44.7 98.9 3 22 1.3 9.5e+02 0.3 0.4 2 11 131 140 130 144 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF585B-204 - 714 1.1e-11 44.7 98.9 4 22 0.3 2.1e+02 2.3 0.1 2 20 159 177 158 179 0.75 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF585B-204 - 714 1.1e-11 44.7 98.9 5 22 0.33 2.3e+02 2.2 1.3 2 22 187 207 186 207 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF585B-204 - 714 1.1e-11 44.7 98.9 6 22 1 7.2e+02 0.6 0.1 2 21 215 234 214 235 0.82 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF585B-204 - 714 1.1e-11 44.7 98.9 7 22 5.5e-05 0.039 14.2 0.2 2 22 243 263 242 263 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF585B-204 - 714 1.1e-11 44.7 98.9 8 22 0.49 3.5e+02 1.6 0.1 9 22 278 291 277 291 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF585B-204 - 714 1.1e-11 44.7 98.9 9 22 2.1 1.5e+03 -0.4 0.1 3 11 300 308 298 318 0.87 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF585B-204 - 714 1.1e-11 44.7 98.9 10 22 0.73 5.2e+02 1.1 0.0 2 22 327 347 326 347 0.90 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF585B-204 - 714 1.1e-11 44.7 98.9 11 22 0.0017 1.2 9.5 0.3 2 22 383 403 382 403 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF585B-204 - 714 1.1e-11 44.7 98.9 12 22 0.044 32 5.0 0.4 4 24 413 433 410 433 0.88 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF585B-204 - 714 1.1e-11 44.7 98.9 13 22 4.5 3.2e+03 -1.4 0.1 2 21 439 458 438 459 0.83 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF585B-204 - 714 1.1e-11 44.7 98.9 14 22 0.43 3.1e+02 1.8 0.4 2 22 467 487 466 487 0.83 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF585B-204 - 714 1.1e-11 44.7 98.9 15 22 0.067 48 4.4 1.3 1 21 494 514 494 515 0.83 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF585B-204 - 714 1.1e-11 44.7 98.9 16 22 0.0048 3.4 8.1 0.0 2 22 523 543 522 543 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF585B-204 - 714 1.1e-11 44.7 98.9 17 22 0.0034 2.4 8.5 0.1 2 20 551 569 550 570 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF585B-204 - 714 1.1e-11 44.7 98.9 18 22 0.0017 1.2 9.5 0.2 2 24 579 601 578 601 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF585B-204 - 714 1.1e-11 44.7 98.9 19 22 0.046 33 4.9 0.1 2 20 607 625 606 625 0.84 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF585B-204 - 714 1.1e-11 44.7 98.9 20 22 0.00087 0.63 10.4 0.2 2 22 635 655 634 655 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF585B-204 - 714 1.1e-11 44.7 98.9 21 22 0.00061 0.44 10.9 0.3 2 24 663 685 662 685 0.91 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF585B-204 - 714 1.1e-11 44.7 98.9 22 22 0.0037 2.6 8.4 0.1 2 24 691 713 690 714 0.94 Zinc-finger double-stranded RNA-binding C1_4 PF07975.12 55 ZNF585B-204 - 714 4.7e-11 42.8 89.2 1 13 0.0038 2.7 8.3 2.3 2 49 105 154 103 156 0.82 TFIIH C1-like domain C1_4 PF07975.12 55 ZNF585B-204 - 714 4.7e-11 42.8 89.2 2 13 0.00048 0.34 11.2 3.0 22 49 155 182 148 192 0.86 TFIIH C1-like domain C1_4 PF07975.12 55 ZNF585B-204 - 714 4.7e-11 42.8 89.2 3 13 0.011 7.7 6.8 1.6 1 49 188 238 188 240 0.82 TFIIH C1-like domain C1_4 PF07975.12 55 ZNF585B-204 - 714 4.7e-11 42.8 89.2 4 13 0.00095 0.68 10.2 1.2 2 49 217 266 216 269 0.87 TFIIH C1-like domain C1_4 PF07975.12 55 ZNF585B-204 - 714 4.7e-11 42.8 89.2 5 13 0.081 58 4.0 0.1 20 49 293 322 272 324 0.78 TFIIH C1-like domain C1_4 PF07975.12 55 ZNF585B-204 - 714 4.7e-11 42.8 89.2 6 13 0.024 17 5.7 0.9 2 49 301 350 300 353 0.77 TFIIH C1-like domain C1_4 PF07975.12 55 ZNF585B-204 - 714 4.7e-11 42.8 89.2 7 13 0.003 2.1 8.6 1.8 2 49 357 406 356 408 0.86 TFIIH C1-like domain C1_4 PF07975.12 55 ZNF585B-204 - 714 4.7e-11 42.8 89.2 8 13 0.00051 0.37 11.1 1.5 2 49 413 462 411 464 0.86 TFIIH C1-like domain C1_4 PF07975.12 55 ZNF585B-204 - 714 4.7e-11 42.8 89.2 9 13 0.0017 1.2 9.4 3.5 1 49 468 518 468 520 0.84 TFIIH C1-like domain C1_4 PF07975.12 55 ZNF585B-204 - 714 4.7e-11 42.8 89.2 10 13 0.0033 2.4 8.5 0.7 2 49 525 574 524 576 0.86 TFIIH C1-like domain C1_4 PF07975.12 55 ZNF585B-204 - 714 4.7e-11 42.8 89.2 11 13 0.0061 4.4 7.6 1.1 2 49 581 630 580 633 0.80 TFIIH C1-like domain C1_4 PF07975.12 55 ZNF585B-204 - 714 4.7e-11 42.8 89.2 12 13 0.019 14 6.0 2.9 2 49 609 658 609 660 0.84 TFIIH C1-like domain C1_4 PF07975.12 55 ZNF585B-204 - 714 4.7e-11 42.8 89.2 13 13 0.019 13 6.1 1.2 2 47 665 712 664 714 0.69 TFIIH C1-like domain XPA_N PF01286.18 32 ZNF585B-204 - 714 1.6e-08 34.4 74.0 1 21 0.11 78 3.4 0.0 3 11 104 112 103 114 0.87 XPA protein N-terminal XPA_N PF01286.18 32 ZNF585B-204 - 714 1.6e-08 34.4 74.0 2 21 0.015 11 6.1 0.1 3 18 132 148 130 152 0.74 XPA protein N-terminal XPA_N PF01286.18 32 ZNF585B-204 - 714 1.6e-08 34.4 74.0 3 21 0.075 54 4.0 0.1 3 11 160 168 159 170 0.89 XPA protein N-terminal XPA_N PF01286.18 32 ZNF585B-204 - 714 1.6e-08 34.4 74.0 4 21 0.071 51 4.0 0.4 3 12 188 197 186 200 0.88 XPA protein N-terminal XPA_N PF01286.18 32 ZNF585B-204 - 714 1.6e-08 34.4 74.0 5 21 0.076 55 3.9 0.1 3 12 216 225 215 227 0.88 XPA protein N-terminal XPA_N PF01286.18 32 ZNF585B-204 - 714 1.6e-08 34.4 74.0 6 21 0.26 1.8e+02 2.3 0.1 3 12 244 253 242 260 0.84 XPA protein N-terminal XPA_N PF01286.18 32 ZNF585B-204 - 714 1.6e-08 34.4 74.0 7 21 0.041 29 4.8 0.1 3 12 300 309 298 310 0.88 XPA protein N-terminal XPA_N PF01286.18 32 ZNF585B-204 - 714 1.6e-08 34.4 74.0 8 21 0.25 1.8e+02 2.3 0.1 3 12 328 337 326 340 0.88 XPA protein N-terminal XPA_N PF01286.18 32 ZNF585B-204 - 714 1.6e-08 34.4 74.0 9 21 1.9 1.3e+03 -0.5 0.0 3 11 356 364 355 366 0.84 XPA protein N-terminal XPA_N PF01286.18 32 ZNF585B-204 - 714 1.6e-08 34.4 74.0 10 21 0.57 4.1e+02 1.1 0.1 3 12 384 393 382 398 0.86 XPA protein N-terminal XPA_N PF01286.18 32 ZNF585B-204 - 714 1.6e-08 34.4 74.0 11 21 0.06 43 4.3 0.0 3 12 412 421 410 429 0.85 XPA protein N-terminal XPA_N PF01286.18 32 ZNF585B-204 - 714 1.6e-08 34.4 74.0 12 21 0.11 77 3.5 0.0 3 12 440 449 439 456 0.90 XPA protein N-terminal XPA_N PF01286.18 32 ZNF585B-204 - 714 1.6e-08 34.4 74.0 13 21 0.24 1.7e+02 2.4 0.2 3 12 468 477 466 479 0.88 XPA protein N-terminal XPA_N PF01286.18 32 ZNF585B-204 - 714 1.6e-08 34.4 74.0 14 21 0.024 17 5.5 0.2 3 12 496 505 494 510 0.88 XPA protein N-terminal XPA_N PF01286.18 32 ZNF585B-204 - 714 1.6e-08 34.4 74.0 15 21 0.17 1.2e+02 2.8 0.0 3 11 524 532 522 534 0.88 XPA protein N-terminal XPA_N PF01286.18 32 ZNF585B-204 - 714 1.6e-08 34.4 74.0 16 21 0.064 46 4.2 0.2 3 12 552 561 550 569 0.79 XPA protein N-terminal XPA_N PF01286.18 32 ZNF585B-204 - 714 1.6e-08 34.4 74.0 17 21 0.038 27 4.9 0.0 3 12 580 589 578 597 0.84 XPA protein N-terminal XPA_N PF01286.18 32 ZNF585B-204 - 714 1.6e-08 34.4 74.0 18 21 0.031 22 5.2 0.1 3 12 608 617 606 626 0.84 XPA protein N-terminal XPA_N PF01286.18 32 ZNF585B-204 - 714 1.6e-08 34.4 74.0 19 21 0.087 63 3.7 0.2 3 12 636 645 634 652 0.85 XPA protein N-terminal XPA_N PF01286.18 32 ZNF585B-204 - 714 1.6e-08 34.4 74.0 20 21 0.039 28 4.9 0.0 3 12 664 673 662 676 0.88 XPA protein N-terminal XPA_N PF01286.18 32 ZNF585B-204 - 714 1.6e-08 34.4 74.0 21 21 4.7 3.4e+03 -1.8 0.1 3 11 692 700 691 702 0.83 XPA protein N-terminal ADK_lid PF05191.14 36 ZNF585B-204 - 714 1.7e-08 34.3 61.1 1 13 0.0014 1 9.4 0.7 3 33 104 142 103 143 0.84 Adenylate kinase, active site lid ADK_lid PF05191.14 36 ZNF585B-204 - 714 1.7e-08 34.3 61.1 2 13 0.13 90 3.2 1.0 4 33 189 226 160 228 0.72 Adenylate kinase, active site lid ADK_lid PF05191.14 36 ZNF585B-204 - 714 1.7e-08 34.3 61.1 3 13 0.021 15 5.7 0.1 4 34 245 311 243 313 0.61 Adenylate kinase, active site lid ADK_lid PF05191.14 36 ZNF585B-204 - 714 1.7e-08 34.3 61.1 4 13 0.066 48 4.1 0.1 4 32 329 365 327 368 0.72 Adenylate kinase, active site lid ADK_lid PF05191.14 36 ZNF585B-204 - 714 1.7e-08 34.3 61.1 5 13 0.039 28 4.8 3.2 4 35 385 424 355 424 0.78 Adenylate kinase, active site lid ADK_lid PF05191.14 36 ZNF585B-204 - 714 1.7e-08 34.3 61.1 6 13 2.7e-06 0.0019 18.1 0.4 3 36 412 453 410 453 0.84 Adenylate kinase, active site lid ADK_lid PF05191.14 36 ZNF585B-204 - 714 1.7e-08 34.3 61.1 7 13 3 2.1e+03 -1.2 0.1 24 33 469 478 465 481 0.70 Adenylate kinase, active site lid ADK_lid PF05191.14 36 ZNF585B-204 - 714 1.7e-08 34.3 61.1 8 13 0.01 7.2 6.7 0.8 4 33 497 534 495 536 0.74 Adenylate kinase, active site lid ADK_lid PF05191.14 36 ZNF585B-204 - 714 1.7e-08 34.3 61.1 9 13 0.0084 6 6.9 0.2 4 31 553 588 551 592 0.68 Adenylate kinase, active site lid ADK_lid PF05191.14 36 ZNF585B-204 - 714 1.7e-08 34.3 61.1 10 13 0.0025 1.8 8.6 2.2 3 33 580 618 578 620 0.82 Adenylate kinase, active site lid ADK_lid PF05191.14 36 ZNF585B-204 - 714 1.7e-08 34.3 61.1 11 13 0.048 35 4.5 1.3 3 31 608 644 607 648 0.70 Adenylate kinase, active site lid ADK_lid PF05191.14 36 ZNF585B-204 - 714 1.7e-08 34.3 61.1 12 13 0.005 3.6 7.7 0.5 4 34 637 675 635 676 0.74 Adenylate kinase, active site lid ADK_lid PF05191.14 36 ZNF585B-204 - 714 1.7e-08 34.3 61.1 13 13 0.0052 3.7 7.6 2.4 3 34 664 703 663 704 0.82 Adenylate kinase, active site lid zf-trcl PF13451.6 48 ZNF585B-204 - 714 1.8e-07 30.9 86.3 1 22 3.4 2.4e+03 -1.5 0.1 3 18 73 88 72 89 0.85 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF585B-204 - 714 1.8e-07 30.9 86.3 2 22 0.068 49 3.9 3.1 3 39 101 136 100 138 0.78 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF585B-204 - 714 1.8e-07 30.9 86.3 3 22 0.042 30 4.6 0.4 2 14 128 140 127 143 0.88 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF585B-204 - 714 1.8e-07 30.9 86.3 4 22 0.69 5e+02 0.7 0.1 4 15 158 169 156 173 0.80 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF585B-204 - 714 1.8e-07 30.9 86.3 5 22 0.099 71 3.4 0.5 4 15 186 197 184 199 0.85 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF585B-204 - 714 1.8e-07 30.9 86.3 6 22 0.28 2e+02 2.0 0.1 4 15 214 225 212 228 0.88 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF585B-204 - 714 1.8e-07 30.9 86.3 7 22 0.046 33 4.5 0.0 3 15 241 253 239 261 0.86 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF585B-204 - 714 1.8e-07 30.9 86.3 8 22 0.024 18 5.4 0.1 3 16 297 310 295 313 0.84 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF585B-204 - 714 1.8e-07 30.9 86.3 9 22 0.028 20 5.2 0.1 3 15 325 337 323 340 0.89 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF585B-204 - 714 1.8e-07 30.9 86.3 10 22 0.53 3.8e+02 1.1 0.1 3 15 353 365 352 369 0.86 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF585B-204 - 714 1.8e-07 30.9 86.3 11 22 0.061 44 4.1 1.1 3 40 381 417 379 419 0.74 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF585B-204 - 714 1.8e-07 30.9 86.3 12 22 0.032 23 5.0 0.1 3 15 409 421 407 424 0.90 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF585B-204 - 714 1.8e-07 30.9 86.3 13 22 0.087 62 3.6 0.1 3 15 437 449 435 451 0.89 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF585B-204 - 714 1.8e-07 30.9 86.3 14 22 0.19 1.4e+02 2.5 0.1 3 15 465 477 463 480 0.87 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF585B-204 - 714 1.8e-07 30.9 86.3 15 22 0.36 2.6e+02 1.6 0.3 4 14 494 504 492 505 0.85 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF585B-204 - 714 1.8e-07 30.9 86.3 16 22 0.015 11 6.0 0.1 3 15 521 533 519 536 0.91 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF585B-204 - 714 1.8e-07 30.9 86.3 17 22 0.016 12 5.9 0.1 3 15 549 561 547 565 0.88 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF585B-204 - 714 1.8e-07 30.9 86.3 18 22 0.045 32 4.5 0.1 3 14 577 588 575 589 0.89 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF585B-204 - 714 1.8e-07 30.9 86.3 19 22 0.07 50 3.9 0.1 3 14 605 616 603 617 0.90 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF585B-204 - 714 1.8e-07 30.9 86.3 20 22 0.015 11 6.0 0.1 3 15 633 645 631 653 0.87 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF585B-204 - 714 1.8e-07 30.9 86.3 21 22 0.043 31 4.6 0.1 3 14 661 672 659 674 0.90 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF585B-204 - 714 1.8e-07 30.9 86.3 22 22 0.065 47 4.0 0.1 2 15 688 701 687 710 0.91 Probable zinc-ribbon domain # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF585B-204.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF585B-204.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF585B-204.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF585B-204.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF585B-204.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:10:13 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZNF585B-205 - 769 2e-147 473.7 124.4 1 23 2.9 2e+03 -0.5 0.1 11 18 126 133 124 140 0.79 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF585B-205 - 769 2e-147 473.7 124.4 2 23 6.2e-05 0.042 14.3 0.0 3 25 146 168 144 169 0.89 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF585B-205 - 769 2e-147 473.7 124.4 3 23 4.5e-07 0.00031 21.0 3.0 5 24 176 195 173 197 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF585B-205 - 769 2e-147 473.7 124.4 4 23 5.9e-09 4.1e-06 27.0 1.7 2 24 201 223 200 225 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF585B-205 - 769 2e-147 473.7 124.4 5 23 1.7e-08 1.2e-05 25.5 0.8 2 25 229 252 228 253 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF585B-205 - 769 2e-147 473.7 124.4 6 23 2.1e-05 0.014 15.8 0.0 2 24 257 279 256 281 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF585B-205 - 769 2e-147 473.7 124.4 7 23 1.5e-09 1e-06 28.8 0.1 2 24 285 307 284 309 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF585B-205 - 769 2e-147 473.7 124.4 8 23 4.1e-05 0.028 14.8 0.1 2 26 313 337 312 337 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF585B-205 - 769 2e-147 473.7 124.4 9 23 0.099 68 4.1 0.1 17 25 356 364 340 365 0.76 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF585B-205 - 769 2e-147 473.7 124.4 10 23 3.2e-10 2.2e-07 31.0 0.1 5 25 372 392 368 393 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF585B-205 - 769 2e-147 473.7 124.4 11 23 2e-06 0.0014 19.0 0.0 1 24 396 419 396 421 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF585B-205 - 769 2e-147 473.7 124.4 12 23 2.8e-08 1.9e-05 24.8 1.5 2 26 425 449 424 449 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF585B-205 - 769 2e-147 473.7 124.4 13 23 9.2e-10 6.4e-07 29.5 2.1 5 26 456 477 453 477 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF585B-205 - 769 2e-147 473.7 124.4 14 23 2e-08 1.4e-05 25.3 0.5 1 25 480 504 480 505 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF585B-205 - 769 2e-147 473.7 124.4 15 23 6.1e-11 4.2e-08 33.3 0.2 2 25 509 532 508 533 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF585B-205 - 769 2e-147 473.7 124.4 16 23 6.9e-10 4.8e-07 29.9 0.4 1 25 536 560 536 561 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF585B-205 - 769 2e-147 473.7 124.4 17 23 1.2e-08 8e-06 26.0 0.1 5 24 568 587 565 589 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF585B-205 - 769 2e-147 473.7 124.4 18 23 3.3e-11 2.3e-08 34.1 0.5 4 26 595 617 592 617 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF585B-205 - 769 2e-147 473.7 124.4 19 23 1.6e-07 0.00011 22.4 0.2 5 25 624 644 621 644 0.89 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF585B-205 - 769 2e-147 473.7 124.4 20 23 1.8e-10 1.2e-07 31.8 1.0 1 25 648 672 648 673 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF585B-205 - 769 2e-147 473.7 124.4 21 23 3.7e-10 2.6e-07 30.8 1.4 3 26 678 701 676 701 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF585B-205 - 769 2e-147 473.7 124.4 22 23 1.6e-10 1.1e-07 31.9 0.1 2 26 705 729 704 729 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF585B-205 - 769 2e-147 473.7 124.4 23 23 1.3e-09 8.9e-07 29.1 0.2 1 25 732 756 732 757 0.96 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZNF585B-205 - 769 7e-130 416.8 138.9 1 23 0.33 2.2e+02 2.6 0.0 7 21 136 150 130 151 0.89 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF585B-205 - 769 7e-130 416.8 138.9 2 23 4.9e-05 0.034 14.6 0.1 1 23 158 180 158 180 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF585B-205 - 769 7e-130 416.8 138.9 3 23 4e-07 0.00027 21.2 3.7 1 23 186 208 186 208 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF585B-205 - 769 7e-130 416.8 138.9 4 23 1.2e-06 0.00082 19.7 0.1 1 23 214 236 214 236 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF585B-205 - 769 7e-130 416.8 138.9 5 23 2.1e-08 1.4e-05 25.2 1.4 1 23 242 264 242 264 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF585B-205 - 769 7e-130 416.8 138.9 6 23 6.4e-05 0.044 14.2 0.1 1 23 270 292 270 292 0.93 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF585B-205 - 769 7e-130 416.8 138.9 7 23 1.4e-09 9.6e-07 28.9 0.5 1 23 298 320 298 320 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF585B-205 - 769 7e-130 416.8 138.9 8 23 0.0044 3 8.5 0.0 6 21 328 346 325 347 0.80 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF585B-205 - 769 7e-130 416.8 138.9 9 23 2.1e-07 0.00014 22.1 0.1 3 23 356 376 355 376 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF585B-205 - 769 7e-130 416.8 138.9 10 23 1.5e-09 1.1e-06 28.8 0.2 1 23 382 404 382 404 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF585B-205 - 769 7e-130 416.8 138.9 11 23 6.4e-06 0.0044 17.4 0.3 1 23 410 432 410 432 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF585B-205 - 769 7e-130 416.8 138.9 12 23 7.5e-07 0.00052 20.3 4.7 1 23 438 460 438 460 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF585B-205 - 769 7e-130 416.8 138.9 13 23 1.5e-09 1e-06 28.8 1.0 1 23 466 488 466 488 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF585B-205 - 769 7e-130 416.8 138.9 14 23 1.3e-08 9e-06 25.9 0.4 1 23 494 516 494 516 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF585B-205 - 769 7e-130 416.8 138.9 15 23 3.7e-09 2.6e-06 27.6 0.5 1 23 522 544 522 544 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF585B-205 - 769 7e-130 416.8 138.9 16 23 3.3e-07 0.00023 21.4 0.4 1 23 550 572 550 572 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF585B-205 - 769 7e-130 416.8 138.9 17 23 9.8e-09 6.8e-06 26.3 0.4 1 23 578 600 578 600 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF585B-205 - 769 7e-130 416.8 138.9 18 23 4.4e-08 3e-05 24.2 0.4 1 20 606 625 606 628 0.94 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF585B-205 - 769 7e-130 416.8 138.9 19 23 1.9e-08 1.3e-05 25.4 0.3 1 23 634 656 634 656 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF585B-205 - 769 7e-130 416.8 138.9 20 23 3.5e-08 2.4e-05 24.5 1.7 1 23 662 684 662 684 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF585B-205 - 769 7e-130 416.8 138.9 21 23 4.2e-10 2.9e-07 30.6 0.9 1 23 690 712 690 712 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF585B-205 - 769 7e-130 416.8 138.9 22 23 4.2e-09 2.9e-06 27.4 0.5 1 23 718 740 718 740 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF585B-205 - 769 7e-130 416.8 138.9 23 23 2e-06 0.0014 19.0 0.3 1 23 746 768 746 768 0.98 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZNF585B-205 - 769 1.2e-70 228.0 134.0 1 23 4.5 3.1e+03 -0.5 0.0 7 21 136 150 130 152 0.77 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF585B-205 - 769 1.2e-70 228.0 134.0 2 23 0.00013 0.089 13.7 0.2 1 23 158 180 158 181 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF585B-205 - 769 1.2e-70 228.0 134.0 3 23 8.9e-05 0.062 14.2 3.0 1 23 186 208 186 209 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF585B-205 - 769 1.2e-70 228.0 134.0 4 23 5.2e-05 0.036 14.9 0.1 1 23 214 236 214 237 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF585B-205 - 769 1.2e-70 228.0 134.0 5 23 6.6e-05 0.046 14.6 1.0 1 23 242 264 242 265 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF585B-205 - 769 1.2e-70 228.0 134.0 6 23 0.00039 0.27 12.2 0.1 1 23 270 292 270 293 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF585B-205 - 769 1.2e-70 228.0 134.0 7 23 7e-06 0.0048 17.6 0.6 1 23 298 320 298 321 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF585B-205 - 769 1.2e-70 228.0 134.0 8 23 0.2 1.4e+02 3.7 0.0 6 21 328 346 326 349 0.80 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF585B-205 - 769 1.2e-70 228.0 134.0 9 23 0.00048 0.33 11.9 0.1 2 23 355 376 354 377 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF585B-205 - 769 1.2e-70 228.0 134.0 10 23 2.9e-05 0.02 15.7 0.2 1 23 382 404 382 405 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF585B-205 - 769 1.2e-70 228.0 134.0 11 23 0.0093 6.4 7.9 0.2 1 23 410 432 410 433 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF585B-205 - 769 1.2e-70 228.0 134.0 12 23 1.6e-05 0.011 16.5 3.7 1 23 438 460 438 461 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF585B-205 - 769 1.2e-70 228.0 134.0 13 23 9.3e-06 0.0064 17.2 0.5 1 23 466 488 466 489 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF585B-205 - 769 1.2e-70 228.0 134.0 14 23 3.5e-05 0.024 15.5 0.3 1 23 494 516 494 517 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF585B-205 - 769 1.2e-70 228.0 134.0 15 23 0.0002 0.14 13.1 0.3 1 23 522 544 522 545 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF585B-205 - 769 1.2e-70 228.0 134.0 16 23 0.0002 0.14 13.1 0.5 1 23 550 572 550 573 0.89 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF585B-205 - 769 1.2e-70 228.0 134.0 17 23 0.00015 0.1 13.5 0.3 1 23 578 600 578 601 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF585B-205 - 769 1.2e-70 228.0 134.0 18 23 5.5e-06 0.0038 17.9 0.5 1 21 606 626 606 629 0.90 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF585B-205 - 769 1.2e-70 228.0 134.0 19 23 1.3e-05 0.0092 16.7 0.4 1 23 634 656 634 657 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF585B-205 - 769 1.2e-70 228.0 134.0 20 23 1.3e-05 0.009 16.8 1.1 1 23 662 684 662 685 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF585B-205 - 769 1.2e-70 228.0 134.0 21 23 4.2e-06 0.0029 18.3 0.8 1 23 690 712 690 713 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF585B-205 - 769 1.2e-70 228.0 134.0 22 23 3.1e-05 0.022 15.6 0.4 1 23 718 740 718 741 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF585B-205 - 769 1.2e-70 228.0 134.0 23 23 0.00013 0.092 13.6 0.3 1 23 746 768 746 769 0.94 C2H2-type zinc finger Zn-ribbon_8 PF09723.10 40 ZNF585B-205 - 769 2e-25 88.6 93.2 1 18 0.19 1.3e+02 2.8 0.4 6 34 130 165 129 171 0.53 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF585B-205 - 769 2e-25 88.6 93.2 2 18 0.0068 4.7 7.4 3.0 6 34 158 193 157 198 0.79 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF585B-205 - 769 2e-25 88.6 93.2 3 18 0.0029 2 8.6 5.4 6 34 186 221 184 224 0.82 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF585B-205 - 769 2e-25 88.6 93.2 4 18 0.077 53 4.0 0.7 6 15 214 223 213 234 0.91 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF585B-205 - 769 2e-25 88.6 93.2 5 18 0.00039 0.27 11.4 1.1 7 34 243 277 241 283 0.90 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF585B-205 - 769 2e-25 88.6 93.2 6 18 0.013 8.6 6.6 1.1 6 17 298 315 297 333 0.71 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF585B-205 - 769 2e-25 88.6 93.2 7 18 0.042 29 4.9 0.4 6 35 326 362 325 366 0.62 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF585B-205 - 769 2e-25 88.6 93.2 8 18 2.6e-05 0.018 15.2 0.6 6 34 382 417 381 423 0.91 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF585B-205 - 769 2e-25 88.6 93.2 9 18 5.2e-05 0.036 14.2 0.6 6 35 438 474 437 479 0.86 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF585B-205 - 769 2e-25 88.6 93.2 10 18 3.9e-05 0.027 14.6 0.9 6 36 466 503 465 506 0.88 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF585B-205 - 769 2e-25 88.6 93.2 11 18 3.3e-05 0.023 14.8 1.3 6 36 494 531 492 535 0.89 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF585B-205 - 769 2e-25 88.6 93.2 12 18 0.014 9.3 6.5 0.3 6 17 522 533 520 543 0.84 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF585B-205 - 769 2e-25 88.6 93.2 13 18 6.8e-07 0.00047 20.2 1.2 5 35 549 586 549 590 0.90 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF585B-205 - 769 2e-25 88.6 93.2 14 18 1.3e-05 0.0092 16.1 2.2 6 34 606 641 605 646 0.92 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF585B-205 - 769 2e-25 88.6 93.2 15 18 1.8e-05 0.012 15.7 1.8 6 38 634 673 633 675 0.92 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF585B-205 - 769 2e-25 88.6 93.2 16 18 5.3e-06 0.0037 17.4 2.3 6 35 690 726 689 730 0.92 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF585B-205 - 769 2e-25 88.6 93.2 17 18 0.00061 0.42 10.8 1.7 6 38 718 758 717 760 0.86 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF585B-205 - 769 2e-25 88.6 93.2 18 18 0.32 2.2e+02 2.0 0.1 6 16 746 756 745 766 0.85 Zinc ribbon domain KRAB PF01352.27 42 ZNF585B-205 - 769 2.6e-23 81.4 0.1 1 1 6.7e-26 4.6e-23 80.6 0.1 1 42 26 67 26 67 0.99 KRAB box zf-C2H2_6 PF13912.6 27 ZNF585B-205 - 769 4.5e-20 71.2 132.6 1 22 0.033 23 5.1 0.1 2 26 158 182 157 183 0.90 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF585B-205 - 769 4.5e-20 71.2 132.6 2 22 0.0024 1.7 8.7 1.8 2 11 186 195 186 208 0.83 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF585B-205 - 769 4.5e-20 71.2 132.6 3 22 0.00015 0.1 12.6 0.2 2 13 214 225 213 236 0.86 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF585B-205 - 769 4.5e-20 71.2 132.6 4 22 0.014 9.4 6.4 0.6 1 11 241 251 241 253 0.92 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF585B-205 - 769 4.5e-20 71.2 132.6 5 22 0.32 2.2e+02 2.0 0.1 2 24 270 292 269 295 0.84 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF585B-205 - 769 4.5e-20 71.2 132.6 6 22 0.017 12 6.1 0.8 2 11 298 307 298 311 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF585B-205 - 769 4.5e-20 71.2 132.6 7 22 1.3 9.1e+02 0.0 0.0 2 20 326 344 326 346 0.86 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF585B-205 - 769 4.5e-20 71.2 132.6 8 22 0.0038 2.6 8.1 0.1 3 20 355 372 355 378 0.79 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF585B-205 - 769 4.5e-20 71.2 132.6 9 22 0.059 41 4.3 0.2 2 20 382 400 382 406 0.80 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF585B-205 - 769 4.5e-20 71.2 132.6 10 22 5.2 3.6e+03 -1.9 0.0 2 11 410 419 409 421 0.87 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF585B-205 - 769 4.5e-20 71.2 132.6 11 22 0.7 4.8e+02 0.9 3.5 2 22 438 458 438 462 0.81 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF585B-205 - 769 4.5e-20 71.2 132.6 12 22 0.00012 0.079 13.0 0.6 2 24 466 488 466 491 0.95 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF585B-205 - 769 4.5e-20 71.2 132.6 13 22 0.001 0.69 10.0 0.2 2 24 494 516 493 519 0.87 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF585B-205 - 769 4.5e-20 71.2 132.6 14 22 0.0017 1.1 9.3 0.5 2 21 522 541 522 546 0.79 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF585B-205 - 769 4.5e-20 71.2 132.6 15 22 0.0019 1.3 9.1 0.7 2 12 550 560 549 561 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF585B-205 - 769 4.5e-20 71.2 132.6 16 22 0.033 23 5.1 0.2 2 11 578 587 578 598 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF585B-205 - 769 4.5e-20 71.2 132.6 17 22 0.0047 3.2 7.9 1.6 2 13 606 617 606 618 0.96 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF585B-205 - 769 4.5e-20 71.2 132.6 18 22 0.0016 1.1 9.3 1.2 2 24 634 656 634 659 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF585B-205 - 769 4.5e-20 71.2 132.6 19 22 8.6e-05 0.059 13.4 0.9 2 22 662 682 662 686 0.88 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF585B-205 - 769 4.5e-20 71.2 132.6 20 22 0.012 8.2 6.6 1.4 2 12 690 700 690 702 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF585B-205 - 769 4.5e-20 71.2 132.6 21 22 0.00031 0.21 11.6 0.8 2 24 718 740 718 742 0.96 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF585B-205 - 769 4.5e-20 71.2 132.6 22 22 0.15 1e+02 3.1 0.2 2 11 746 755 746 756 0.93 C2H2-type zinc finger DZR PF12773.7 49 ZNF585B-205 - 769 1.5e-15 57.0 76.3 1 5 0.55 3.8e+02 1.2 15.4 1 39 244 308 148 313 0.77 Double zinc ribbon DZR PF12773.7 49 ZNF585B-205 - 769 1.5e-15 57.0 76.3 2 5 0.035 24 5.0 10.3 1 40 384 449 344 481 0.55 Double zinc ribbon DZR PF12773.7 49 ZNF585B-205 - 769 1.5e-15 57.0 76.3 3 5 0.032 22 5.2 12.4 1 49 468 556 456 556 0.85 Double zinc ribbon DZR PF12773.7 49 ZNF585B-205 - 769 1.5e-15 57.0 76.3 4 5 8.4e-05 0.058 13.4 0.6 12 44 549 593 540 596 0.83 Double zinc ribbon DZR PF12773.7 49 ZNF585B-205 - 769 1.5e-15 57.0 76.3 5 5 0.36 2.5e+02 1.8 17.7 1 49 636 724 596 761 0.75 Double zinc ribbon DUF3268 PF11672.8 118 ZNF585B-205 - 769 1.3e-12 48.1 73.1 1 12 0.029 20 5.6 0.1 3 39 130 167 128 180 0.85 zinc-finger-containing domain DUF3268 PF11672.8 118 ZNF585B-205 - 769 1.3e-12 48.1 73.1 2 12 0.011 7.8 6.9 0.5 2 37 185 220 184 230 0.86 zinc-finger-containing domain DUF3268 PF11672.8 118 ZNF585B-205 - 769 1.3e-12 48.1 73.1 3 12 0.00055 0.38 11.1 0.4 3 38 242 277 240 289 0.89 zinc-finger-containing domain DUF3268 PF11672.8 118 ZNF585B-205 - 769 1.3e-12 48.1 73.1 4 12 0.04 27 5.1 0.3 2 36 297 331 296 341 0.87 zinc-finger-containing domain DUF3268 PF11672.8 118 ZNF585B-205 - 769 1.3e-12 48.1 73.1 5 12 0.00071 0.49 10.7 0.7 2 37 353 388 352 392 0.92 zinc-finger-containing domain DUF3268 PF11672.8 118 ZNF585B-205 - 769 1.3e-12 48.1 73.1 6 12 0.001 0.69 10.3 0.9 2 37 381 416 380 428 0.88 zinc-finger-containing domain DUF3268 PF11672.8 118 ZNF585B-205 - 769 1.3e-12 48.1 73.1 7 12 0.00026 0.18 12.1 1.0 2 38 437 473 436 480 0.90 zinc-finger-containing domain DUF3268 PF11672.8 118 ZNF585B-205 - 769 1.3e-12 48.1 73.1 8 12 0.029 20 5.5 0.5 8 38 471 501 471 519 0.86 zinc-finger-containing domain DUF3268 PF11672.8 118 ZNF585B-205 - 769 1.3e-12 48.1 73.1 9 12 0.0007 0.48 10.8 1.7 2 38 521 557 520 570 0.92 zinc-finger-containing domain DUF3268 PF11672.8 118 ZNF585B-205 - 769 1.3e-12 48.1 73.1 10 12 0.0065 4.5 7.6 0.8 2 39 577 614 576 625 0.78 zinc-finger-containing domain DUF3268 PF11672.8 118 ZNF585B-205 - 769 1.3e-12 48.1 73.1 11 12 0.0037 2.5 8.4 1.1 2 41 633 672 632 680 0.88 zinc-finger-containing domain DUF3268 PF11672.8 118 ZNF585B-205 - 769 1.3e-12 48.1 73.1 12 12 0.00083 0.57 10.5 2.0 2 40 689 727 688 757 0.88 zinc-finger-containing domain zf_UBZ PF18439.1 32 ZNF585B-205 - 769 6.5e-12 44.8 82.0 1 21 0.13 90 2.8 0.1 3 21 158 177 156 177 0.82 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF585B-205 - 769 6.5e-12 44.8 82.0 2 21 0.07 48 3.7 0.3 3 12 186 195 184 198 0.90 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF585B-205 - 769 6.5e-12 44.8 82.0 3 21 0.0074 5.1 6.8 0.1 3 15 214 226 212 233 0.79 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF585B-205 - 769 6.5e-12 44.8 82.0 4 21 0.24 1.6e+02 2.0 0.1 3 12 242 251 240 257 0.83 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF585B-205 - 769 6.5e-12 44.8 82.0 5 21 0.11 74 3.1 0.1 2 15 269 282 268 289 0.75 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF585B-205 - 769 6.5e-12 44.8 82.0 6 21 0.027 19 5.0 0.2 3 21 298 317 296 317 0.85 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF585B-205 - 769 6.5e-12 44.8 82.0 7 21 0.28 1.9e+02 1.7 0.1 4 12 355 363 352 369 0.86 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF585B-205 - 769 6.5e-12 44.8 82.0 8 21 0.074 51 3.6 0.1 3 14 382 393 380 401 0.78 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF585B-205 - 769 6.5e-12 44.8 82.0 9 21 0.66 4.6e+02 0.5 0.0 2 10 409 417 408 428 0.85 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF585B-205 - 769 6.5e-12 44.8 82.0 10 21 0.22 1.5e+02 2.1 0.1 3 14 438 449 436 456 0.82 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF585B-205 - 769 6.5e-12 44.8 82.0 11 21 0.038 26 4.5 0.1 3 13 466 476 464 485 0.79 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF585B-205 - 769 6.5e-12 44.8 82.0 12 21 0.0012 0.82 9.3 0.1 2 21 493 513 492 513 0.86 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF585B-205 - 769 6.5e-12 44.8 82.0 13 21 0.39 2.7e+02 1.3 0.1 3 13 522 532 520 541 0.83 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF585B-205 - 769 6.5e-12 44.8 82.0 14 21 0.057 39 3.9 0.2 2 13 549 560 548 565 0.85 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF585B-205 - 769 6.5e-12 44.8 82.0 15 21 0.065 45 3.8 0.1 3 12 578 587 576 597 0.78 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF585B-205 - 769 6.5e-12 44.8 82.0 16 21 0.0046 3.2 7.4 0.1 3 18 606 622 604 625 0.78 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF585B-205 - 769 6.5e-12 44.8 82.0 17 21 0.0069 4.8 6.9 0.1 3 13 634 644 632 653 0.82 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF585B-205 - 769 6.5e-12 44.8 82.0 18 21 0.0024 1.7 8.3 0.4 3 20 662 680 660 681 0.82 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF585B-205 - 769 6.5e-12 44.8 82.0 19 21 0.003 2.1 8.0 0.2 3 21 690 709 688 709 0.85 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF585B-205 - 769 6.5e-12 44.8 82.0 20 21 0.0049 3.4 7.3 0.1 3 15 718 730 716 737 0.77 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF585B-205 - 769 6.5e-12 44.8 82.0 21 21 1.1 7.8e+02 -0.2 0.2 3 12 746 755 744 759 0.85 Ubiquitin-Binding Zinc Finger C1_4 PF07975.12 55 ZNF585B-205 - 769 1.9e-11 44.0 86.3 1 14 0.0039 2.7 8.3 2.2 2 49 160 209 158 211 0.82 TFIIH C1-like domain C1_4 PF07975.12 55 ZNF585B-205 - 769 1.9e-11 44.0 86.3 2 14 0.00044 0.3 11.3 2.4 23 49 211 237 205 247 0.87 TFIIH C1-like domain C1_4 PF07975.12 55 ZNF585B-205 - 769 1.9e-11 44.0 86.3 3 14 0.012 8.4 6.7 1.6 1 49 243 293 243 295 0.82 TFIIH C1-like domain C1_4 PF07975.12 55 ZNF585B-205 - 769 1.9e-11 44.0 86.3 4 14 0.0011 0.76 10.1 1.2 2 49 272 321 271 324 0.87 TFIIH C1-like domain C1_4 PF07975.12 55 ZNF585B-205 - 769 1.9e-11 44.0 86.3 5 14 0.092 64 3.9 0.1 20 49 348 377 327 379 0.78 TFIIH C1-like domain C1_4 PF07975.12 55 ZNF585B-205 - 769 1.9e-11 44.0 86.3 6 14 0.027 19 5.6 1.0 2 49 356 405 355 409 0.77 TFIIH C1-like domain C1_4 PF07975.12 55 ZNF585B-205 - 769 1.9e-11 44.0 86.3 7 14 0.047 32 4.8 0.9 1 49 383 433 383 435 0.83 TFIIH C1-like domain C1_4 PF07975.12 55 ZNF585B-205 - 769 1.9e-11 44.0 86.3 8 14 0.0034 2.3 8.5 1.8 2 49 412 461 411 463 0.86 TFIIH C1-like domain C1_4 PF07975.12 55 ZNF585B-205 - 769 1.9e-11 44.0 86.3 9 14 0.0005 0.34 11.2 1.3 2 49 468 517 466 521 0.87 TFIIH C1-like domain C1_4 PF07975.12 55 ZNF585B-205 - 769 1.9e-11 44.0 86.3 10 14 0.002 1.4 9.2 3.5 1 49 523 573 523 575 0.84 TFIIH C1-like domain C1_4 PF07975.12 55 ZNF585B-205 - 769 1.9e-11 44.0 86.3 11 14 0.0039 2.7 8.3 0.8 2 49 580 629 579 631 0.86 TFIIH C1-like domain C1_4 PF07975.12 55 ZNF585B-205 - 769 1.9e-11 44.0 86.3 12 14 0.0072 5 7.4 1.1 2 49 636 685 635 687 0.80 TFIIH C1-like domain C1_4 PF07975.12 55 ZNF585B-205 - 769 1.9e-11 44.0 86.3 13 14 0.013 9 6.6 2.7 2 49 664 713 663 715 0.85 TFIIH C1-like domain C1_4 PF07975.12 55 ZNF585B-205 - 769 1.9e-11 44.0 86.3 14 14 0.022 15 5.9 1.3 2 47 720 767 719 769 0.69 TFIIH C1-like domain zinc_ribbon_15 PF17032.5 86 ZNF585B-205 - 769 3.6e-11 43.7 84.4 1 15 0.0026 1.8 9.4 1.5 29 74 149 194 128 203 0.85 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF585B-205 - 769 3.6e-11 43.7 84.4 2 15 0.00069 0.48 11.2 0.7 30 78 206 254 195 258 0.84 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF585B-205 - 769 3.6e-11 43.7 84.4 3 15 0.0055 3.8 8.3 0.9 31 77 263 309 256 313 0.85 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF585B-205 - 769 3.6e-11 43.7 84.4 4 15 0.15 1.1e+02 3.7 0.7 39 76 327 364 317 369 0.70 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF585B-205 - 769 3.6e-11 43.7 84.4 5 15 0.029 20 6.0 2.7 31 74 375 418 368 453 0.82 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF585B-205 - 769 3.6e-11 43.7 84.4 6 15 0.001 0.7 10.7 1.1 33 78 433 478 421 481 0.81 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF585B-205 - 769 3.6e-11 43.7 84.4 7 15 0.00023 0.16 12.7 2.4 33 78 461 506 454 512 0.86 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF585B-205 - 769 3.6e-11 43.7 84.4 8 15 0.0014 0.96 10.2 2.7 30 79 486 535 474 540 0.87 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF585B-205 - 769 3.6e-11 43.7 84.4 9 15 0.00075 0.52 11.1 2.8 30 78 514 562 509 568 0.84 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF585B-205 - 769 3.6e-11 43.7 84.4 10 15 0.0062 4.3 8.2 0.9 30 78 570 618 563 621 0.80 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF585B-205 - 769 3.6e-11 43.7 84.4 11 15 0.003 2.1 9.2 0.9 25 76 593 644 588 648 0.86 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF585B-205 - 769 3.6e-11 43.7 84.4 12 15 0.00031 0.21 12.3 1.1 34 78 630 674 621 678 0.85 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF585B-205 - 769 3.6e-11 43.7 84.4 13 15 0.0022 1.5 9.6 2.6 34 79 658 703 649 706 0.85 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF585B-205 - 769 3.6e-11 43.7 84.4 14 15 0.0011 0.74 10.6 1.2 30 78 682 730 677 733 0.84 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF585B-205 - 769 3.6e-11 43.7 84.4 15 15 0.0069 4.7 8.0 0.9 34 78 714 758 709 762 0.82 zinc-ribbon family zf-C2H2_jaz PF12171.8 27 ZNF585B-205 - 769 3.9e-11 42.9 98.4 1 21 1.1 7.4e+02 0.6 0.2 3 23 159 179 158 181 0.74 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF585B-205 - 769 3.9e-11 42.9 98.4 2 21 1.7 1.2e+03 -0.1 0.6 2 11 186 195 185 198 0.91 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF585B-205 - 769 3.9e-11 42.9 98.4 3 21 0.34 2.3e+02 2.2 0.1 2 20 214 232 213 234 0.75 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF585B-205 - 769 3.9e-11 42.9 98.4 4 21 0.37 2.5e+02 2.1 1.3 2 22 242 262 241 262 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF585B-205 - 769 3.9e-11 42.9 98.4 5 21 1.1 7.9e+02 0.5 0.1 2 21 270 289 269 290 0.82 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF585B-205 - 769 3.9e-11 42.9 98.4 6 21 6.2e-05 0.043 14.1 0.2 2 22 298 318 297 318 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF585B-205 - 769 3.9e-11 42.9 98.4 7 21 0.56 3.8e+02 1.5 0.1 9 22 333 346 332 346 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF585B-205 - 769 3.9e-11 42.9 98.4 8 21 2.4 1.6e+03 -0.5 0.1 3 11 355 363 353 373 0.87 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF585B-205 - 769 3.9e-11 42.9 98.4 9 21 0.82 5.7e+02 1.0 0.0 2 22 382 402 381 402 0.90 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF585B-205 - 769 3.9e-11 42.9 98.4 10 21 0.0019 1.3 9.4 0.3 2 22 438 458 437 458 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF585B-205 - 769 3.9e-11 42.9 98.4 11 21 0.05 34 4.9 0.4 4 24 468 488 465 488 0.88 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF585B-205 - 769 3.9e-11 42.9 98.4 12 21 5 3.5e+03 -1.5 0.1 2 21 494 513 493 514 0.83 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF585B-205 - 769 3.9e-11 42.9 98.4 13 21 0.49 3.3e+02 1.7 0.4 2 22 522 542 521 542 0.83 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF585B-205 - 769 3.9e-11 42.9 98.4 14 21 0.076 52 4.3 1.3 1 21 549 569 549 570 0.83 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF585B-205 - 769 3.9e-11 42.9 98.4 15 21 0.0054 3.7 7.9 0.0 2 22 578 598 577 598 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF585B-205 - 769 3.9e-11 42.9 98.4 16 21 0.0039 2.7 8.4 0.1 2 20 606 624 605 625 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF585B-205 - 769 3.9e-11 42.9 98.4 17 21 0.0019 1.3 9.4 0.2 2 24 634 656 633 656 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF585B-205 - 769 3.9e-11 42.9 98.4 18 21 0.052 36 4.8 0.1 2 20 662 680 661 680 0.84 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF585B-205 - 769 3.9e-11 42.9 98.4 19 21 0.00099 0.68 10.3 0.2 2 22 690 710 689 710 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF585B-205 - 769 3.9e-11 42.9 98.4 20 21 0.00069 0.48 10.8 0.3 2 24 718 740 717 740 0.91 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF585B-205 - 769 3.9e-11 42.9 98.4 21 21 0.0042 2.9 8.3 0.1 2 24 746 768 745 769 0.94 Zinc-finger double-stranded RNA-binding ADK_lid PF05191.14 36 ZNF585B-205 - 769 2.2e-08 33.9 60.0 1 12 0.0016 1.1 9.3 0.7 3 33 159 197 158 198 0.84 Adenylate kinase, active site lid ADK_lid PF05191.14 36 ZNF585B-205 - 769 2.2e-08 33.9 60.0 2 12 0.15 1e+02 3.0 1.1 4 33 244 281 215 283 0.72 Adenylate kinase, active site lid ADK_lid PF05191.14 36 ZNF585B-205 - 769 2.2e-08 33.9 60.0 3 12 0.023 16 5.6 0.0 4 34 300 366 298 368 0.61 Adenylate kinase, active site lid ADK_lid PF05191.14 36 ZNF585B-205 - 769 2.2e-08 33.9 60.0 4 12 0.056 39 4.3 3.7 4 35 440 479 382 479 0.78 Adenylate kinase, active site lid ADK_lid PF05191.14 36 ZNF585B-205 - 769 2.2e-08 33.9 60.0 5 12 3e-06 0.0021 18.0 0.3 3 36 467 508 465 508 0.84 Adenylate kinase, active site lid ADK_lid PF05191.14 36 ZNF585B-205 - 769 2.2e-08 33.9 60.0 6 12 3.3 2.3e+03 -1.3 0.1 24 33 524 533 520 536 0.70 Adenylate kinase, active site lid ADK_lid PF05191.14 36 ZNF585B-205 - 769 2.2e-08 33.9 60.0 7 12 0.011 7.6 6.6 0.7 4 33 552 589 550 591 0.74 Adenylate kinase, active site lid ADK_lid PF05191.14 36 ZNF585B-205 - 769 2.2e-08 33.9 60.0 8 12 0.0098 6.7 6.8 0.2 4 31 608 643 606 647 0.68 Adenylate kinase, active site lid ADK_lid PF05191.14 36 ZNF585B-205 - 769 2.2e-08 33.9 60.0 9 12 0.0028 2 8.5 2.1 3 33 635 673 634 675 0.82 Adenylate kinase, active site lid ADK_lid PF05191.14 36 ZNF585B-205 - 769 2.2e-08 33.9 60.0 10 12 0.065 45 4.2 1.6 3 31 663 699 662 703 0.70 Adenylate kinase, active site lid ADK_lid PF05191.14 36 ZNF585B-205 - 769 2.2e-08 33.9 60.0 11 12 0.0058 4 7.5 0.6 4 34 692 730 690 731 0.74 Adenylate kinase, active site lid ADK_lid PF05191.14 36 ZNF585B-205 - 769 2.2e-08 33.9 60.0 12 12 0.0059 4.1 7.5 2.4 3 34 719 758 717 759 0.82 Adenylate kinase, active site lid XPA_N PF01286.18 32 ZNF585B-205 - 769 7.7e-08 32.2 74.0 1 21 0.12 85 3.3 0.0 3 11 159 167 158 169 0.87 XPA protein N-terminal XPA_N PF01286.18 32 ZNF585B-205 - 769 7.7e-08 32.2 74.0 2 21 0.018 12 6.0 0.1 3 18 187 203 185 207 0.74 XPA protein N-terminal XPA_N PF01286.18 32 ZNF585B-205 - 769 7.7e-08 32.2 74.0 3 21 0.084 58 3.8 0.1 3 11 215 223 214 225 0.89 XPA protein N-terminal XPA_N PF01286.18 32 ZNF585B-205 - 769 7.7e-08 32.2 74.0 4 21 0.08 55 3.9 0.4 3 12 243 252 241 255 0.88 XPA protein N-terminal XPA_N PF01286.18 32 ZNF585B-205 - 769 7.7e-08 32.2 74.0 5 21 0.086 59 3.8 0.1 3 12 271 280 270 282 0.88 XPA protein N-terminal XPA_N PF01286.18 32 ZNF585B-205 - 769 7.7e-08 32.2 74.0 6 21 0.29 2e+02 2.1 0.1 3 12 299 308 297 315 0.84 XPA protein N-terminal XPA_N PF01286.18 32 ZNF585B-205 - 769 7.7e-08 32.2 74.0 7 21 0.046 32 4.7 0.1 3 12 355 364 353 365 0.88 XPA protein N-terminal XPA_N PF01286.18 32 ZNF585B-205 - 769 7.7e-08 32.2 74.0 8 21 0.28 1.9e+02 2.2 0.1 3 12 383 392 381 395 0.88 XPA protein N-terminal XPA_N PF01286.18 32 ZNF585B-205 - 769 7.7e-08 32.2 74.0 9 21 2.1 1.5e+03 -0.6 0.0 3 11 411 419 410 421 0.84 XPA protein N-terminal XPA_N PF01286.18 32 ZNF585B-205 - 769 7.7e-08 32.2 74.0 10 21 0.65 4.5e+02 1.0 0.1 3 12 439 448 437 453 0.86 XPA protein N-terminal XPA_N PF01286.18 32 ZNF585B-205 - 769 7.7e-08 32.2 74.0 11 21 0.068 47 4.1 0.0 3 12 467 476 465 484 0.85 XPA protein N-terminal XPA_N PF01286.18 32 ZNF585B-205 - 769 7.7e-08 32.2 74.0 12 21 0.12 83 3.3 0.0 3 12 495 504 494 511 0.90 XPA protein N-terminal XPA_N PF01286.18 32 ZNF585B-205 - 769 7.7e-08 32.2 74.0 13 21 0.27 1.8e+02 2.3 0.2 3 12 523 532 521 534 0.88 XPA protein N-terminal XPA_N PF01286.18 32 ZNF585B-205 - 769 7.7e-08 32.2 74.0 14 21 0.027 19 5.4 0.2 3 12 551 560 549 565 0.88 XPA protein N-terminal XPA_N PF01286.18 32 ZNF585B-205 - 769 7.7e-08 32.2 74.0 15 21 0.19 1.3e+02 2.7 0.0 3 11 579 587 577 589 0.88 XPA protein N-terminal XPA_N PF01286.18 32 ZNF585B-205 - 769 7.7e-08 32.2 74.0 16 21 0.072 49 4.1 0.2 3 12 607 616 605 624 0.79 XPA protein N-terminal XPA_N PF01286.18 32 ZNF585B-205 - 769 7.7e-08 32.2 74.0 17 21 0.043 29 4.8 0.0 3 12 635 644 633 652 0.84 XPA protein N-terminal XPA_N PF01286.18 32 ZNF585B-205 - 769 7.7e-08 32.2 74.0 18 21 0.035 24 5.1 0.1 3 12 663 672 661 681 0.84 XPA protein N-terminal XPA_N PF01286.18 32 ZNF585B-205 - 769 7.7e-08 32.2 74.0 19 21 0.099 68 3.6 0.2 3 12 691 700 689 707 0.85 XPA protein N-terminal XPA_N PF01286.18 32 ZNF585B-205 - 769 7.7e-08 32.2 74.0 20 21 0.044 30 4.8 0.0 3 12 719 728 717 731 0.88 XPA protein N-terminal XPA_N PF01286.18 32 ZNF585B-205 - 769 7.7e-08 32.2 74.0 21 21 5.3 3.7e+03 -1.9 0.1 3 11 747 755 746 757 0.83 XPA protein N-terminal zf-trcl PF13451.6 48 ZNF585B-205 - 769 7.4e-07 29.0 86.0 1 21 3.8 2.6e+03 -1.6 0.1 3 18 128 143 127 144 0.85 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF585B-205 - 769 7.4e-07 29.0 86.0 2 21 0.078 54 3.8 3.1 3 39 156 191 155 193 0.78 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF585B-205 - 769 7.4e-07 29.0 86.0 3 21 0.049 34 4.5 0.4 2 14 183 195 182 198 0.88 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF585B-205 - 769 7.4e-07 29.0 86.0 4 21 0.86 6e+02 0.5 0.1 4 14 213 223 211 227 0.80 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF585B-205 - 769 7.4e-07 29.0 86.0 5 21 0.11 77 3.3 0.5 4 15 241 252 239 254 0.85 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF585B-205 - 769 7.4e-07 29.0 86.0 6 21 0.31 2.2e+02 1.9 0.1 4 15 269 280 267 283 0.88 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF585B-205 - 769 7.4e-07 29.0 86.0 7 21 0.052 36 4.4 0.0 3 15 296 308 294 316 0.86 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF585B-205 - 769 7.4e-07 29.0 86.0 8 21 0.028 19 5.2 0.1 3 16 352 365 350 368 0.84 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF585B-205 - 769 7.4e-07 29.0 86.0 9 21 0.031 21 5.1 0.1 3 15 380 392 378 395 0.89 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF585B-205 - 769 7.4e-07 29.0 86.0 10 21 0.6 4.1e+02 1.0 0.1 3 15 408 420 407 424 0.86 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF585B-205 - 769 7.4e-07 29.0 86.0 11 21 0.032 22 5.0 1.4 4 42 437 474 434 479 0.55 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF585B-205 - 769 7.4e-07 29.0 86.0 12 21 0.092 64 3.6 0.1 3 15 492 504 490 507 0.89 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF585B-205 - 769 7.4e-07 29.0 86.0 13 21 0.22 1.5e+02 2.4 0.1 3 15 520 532 518 535 0.87 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF585B-205 - 769 7.4e-07 29.0 86.0 14 21 0.41 2.8e+02 1.5 0.3 4 14 549 559 547 560 0.85 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF585B-205 - 769 7.4e-07 29.0 86.0 15 21 0.017 12 5.9 0.1 3 15 576 588 574 591 0.91 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF585B-205 - 769 7.4e-07 29.0 86.0 16 21 0.018 13 5.8 0.1 3 15 604 616 602 620 0.88 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF585B-205 - 769 7.4e-07 29.0 86.0 17 21 0.051 35 4.4 0.1 3 14 632 643 630 644 0.89 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF585B-205 - 769 7.4e-07 29.0 86.0 18 21 0.079 55 3.8 0.1 3 14 660 671 658 672 0.90 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF585B-205 - 769 7.4e-07 29.0 86.0 19 21 0.017 12 5.9 0.1 3 15 688 700 686 708 0.87 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF585B-205 - 769 7.4e-07 29.0 86.0 20 21 0.049 34 4.5 0.1 3 14 716 727 714 729 0.90 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF585B-205 - 769 7.4e-07 29.0 86.0 21 21 0.074 51 3.9 0.1 2 15 743 756 742 765 0.91 Probable zinc-ribbon domain # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF585B-205.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF585B-205.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF585B-205.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF585B-205.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF585B-205.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:10:14 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF585B-206.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF585B-206.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF585B-206.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF585B-206.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF585B-206.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:10:14 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- KRAB PF01352.27 42 ZNF585B-207 - 84 1.2e-24 85.7 0.1 1 2 6.7e-29 1.2e-24 85.7 0.1 1 42 11 52 11 52 0.99 KRAB box KRAB PF01352.27 42 ZNF585B-207 - 84 1.2e-24 85.7 0.1 2 2 0.3 5.4e+03 -2.9 0.2 30 33 61 64 60 65 0.85 KRAB box # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF585B-207.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF585B-207.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF585B-207.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF585B-207.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF585B-207.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:10:14 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF585B-208.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF585B-208.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF585B-208.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF585B-208.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF585B-208.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:10:15 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF585B-209.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF585B-209.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF585B-209.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF585B-209.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF585B-209.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:10:15 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZNF586-201 - 359 1.8e-78 255.8 68.4 1 12 0.00028 0.15 12.6 0.1 9 26 39 56 31 56 0.90 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF586-201 - 359 1.8e-78 255.8 68.4 2 12 0.00027 0.14 12.6 0.9 4 24 68 88 65 90 0.86 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF586-201 - 359 1.8e-78 255.8 68.4 3 12 3.9e-08 2.1e-05 24.8 3.6 5 24 97 116 94 118 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF586-201 - 359 1.8e-78 255.8 68.4 4 12 4.4e-07 0.00023 21.4 0.1 8 25 128 145 125 146 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF586-201 - 359 1.8e-78 255.8 68.4 5 12 4.3e-08 2.3e-05 24.6 0.3 2 25 150 173 149 174 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF586-201 - 359 1.8e-78 255.8 68.4 6 12 9.4e-11 5e-08 33.0 0.2 2 25 178 201 177 202 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF586-201 - 359 1.8e-78 255.8 68.4 7 12 4.3e-11 2.2e-08 34.1 0.3 2 25 206 229 205 230 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF586-201 - 359 1.8e-78 255.8 68.4 8 12 2.4e-10 1.3e-07 31.7 0.4 2 25 234 257 233 257 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF586-201 - 359 1.8e-78 255.8 68.4 9 12 3.2e-07 0.00017 21.9 1.3 1 25 261 284 261 285 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF586-201 - 359 1.8e-78 255.8 68.4 10 12 6e-11 3.2e-08 33.6 0.0 5 25 292 312 288 313 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF586-201 - 359 1.8e-78 255.8 68.4 11 12 1.7e-11 9.2e-09 35.3 0.5 2 26 317 341 316 341 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF586-201 - 359 1.8e-78 255.8 68.4 12 12 0.00015 0.077 13.5 0.6 2 16 345 359 344 359 0.92 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZNF586-201 - 359 1.4e-52 173.3 68.9 1 10 4.4 2.3e+03 -0.6 0.1 5 17 46 61 44 62 0.79 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF586-201 - 359 1.4e-52 173.3 68.9 2 10 7.4e-05 0.039 14.4 0.4 1 16 107 122 107 124 0.93 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF586-201 - 359 1.4e-52 173.3 68.9 3 10 1.2e-05 0.0064 16.9 0.1 1 23 135 157 135 157 0.95 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF586-201 - 359 1.4e-52 173.3 68.9 4 10 8.2e-09 4.3e-06 26.9 0.6 1 23 163 185 163 185 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF586-201 - 359 1.4e-52 173.3 68.9 5 10 1.6e-08 8.4e-06 26.0 0.2 1 23 191 213 191 213 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF586-201 - 359 1.4e-52 173.3 68.9 6 10 2e-09 1e-06 28.8 0.7 1 23 219 241 219 241 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF586-201 - 359 1.4e-52 173.3 68.9 7 10 1e-08 5.3e-06 26.6 1.6 1 23 247 269 247 269 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF586-201 - 359 1.4e-52 173.3 68.9 8 10 4.1e-09 2.2e-06 27.8 1.0 1 23 274 296 274 296 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF586-201 - 359 1.4e-52 173.3 68.9 9 10 3.4e-09 1.8e-06 28.1 0.2 1 23 302 324 302 324 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF586-201 - 359 1.4e-52 173.3 68.9 10 10 1.4e-07 7.5e-05 23.0 3.5 1 23 330 352 330 352 0.96 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZNF586-201 - 359 5.2e-34 114.0 65.6 1 10 6.5 3.4e+03 -0.6 1.1 7 23 85 101 79 102 0.79 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF586-201 - 359 5.2e-34 114.0 65.6 2 10 0.00061 0.32 12.0 0.7 1 18 107 124 107 129 0.85 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF586-201 - 359 5.2e-34 114.0 65.6 3 10 9.7e-06 0.0051 17.5 0.2 1 23 135 157 135 158 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF586-201 - 359 5.2e-34 114.0 65.6 4 10 1.3e-05 0.0067 17.2 0.5 1 23 163 185 163 186 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF586-201 - 359 5.2e-34 114.0 65.6 5 10 1.4e-06 0.00073 20.2 0.3 1 23 191 213 191 214 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF586-201 - 359 5.2e-34 114.0 65.6 6 10 4.7e-06 0.0025 18.5 0.9 1 23 219 241 219 242 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF586-201 - 359 5.2e-34 114.0 65.6 7 10 9.9e-06 0.0052 17.5 1.5 1 23 247 269 247 270 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF586-201 - 359 5.2e-34 114.0 65.6 8 10 3.1e-06 0.0016 19.1 1.0 1 23 274 296 274 297 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF586-201 - 359 5.2e-34 114.0 65.6 9 10 1.5e-06 0.00081 20.0 0.3 1 23 302 324 302 325 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF586-201 - 359 5.2e-34 114.0 65.6 10 10 7.2e-05 0.038 14.8 2.6 1 23 330 352 330 353 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF586-201 - 359 4.6e-23 80.7 61.9 1 10 8.6 4.6e+03 -2.2 0.0 8 15 97 104 97 104 0.88 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF586-201 - 359 4.6e-23 80.7 61.9 2 10 8.4e-05 0.044 13.8 1.3 2 12 107 117 106 119 0.92 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF586-201 - 359 4.6e-23 80.7 61.9 3 10 0.0011 0.56 10.3 0.3 2 24 135 157 135 159 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF586-201 - 359 4.6e-23 80.7 61.9 4 10 4.1e-08 2.2e-05 24.3 0.5 1 24 162 185 162 188 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF586-201 - 359 4.6e-23 80.7 61.9 5 10 1e-05 0.0054 16.7 0.3 2 24 191 213 191 216 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF586-201 - 359 4.6e-23 80.7 61.9 6 10 0.00054 0.28 11.2 0.8 2 24 219 241 219 244 0.83 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF586-201 - 359 4.6e-23 80.7 61.9 7 10 6.5e-05 0.034 14.1 0.9 2 20 247 265 247 271 0.77 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF586-201 - 359 4.6e-23 80.7 61.9 8 10 5.7e-05 0.03 14.3 0.9 1 24 273 296 273 299 0.91 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF586-201 - 359 4.6e-23 80.7 61.9 9 10 8.6e-05 0.045 13.8 0.3 2 24 302 324 302 327 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF586-201 - 359 4.6e-23 80.7 61.9 10 10 0.16 87 3.3 0.7 2 12 330 340 330 348 0.94 C2H2-type zinc finger zf-C2H2_jaz PF12171.8 27 ZNF586-201 - 359 5.3e-20 71.2 21.6 1 9 0.069 36 4.8 0.1 2 17 107 122 106 124 0.82 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF586-201 - 359 5.3e-20 71.2 21.6 2 9 0.00027 0.14 12.4 0.1 2 22 135 155 134 155 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF586-201 - 359 5.3e-20 71.2 21.6 3 9 0.18 93 3.5 0.2 2 20 163 181 162 183 0.77 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF586-201 - 359 5.3e-20 71.2 21.6 4 9 0.0014 0.74 10.2 0.0 2 22 191 211 190 211 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF586-201 - 359 5.3e-20 71.2 21.6 5 9 2.6e-05 0.014 15.7 0.0 2 22 219 239 218 239 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF586-201 - 359 5.3e-20 71.2 21.6 6 9 0.13 66 4.0 0.1 2 12 247 257 246 266 0.90 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF586-201 - 359 5.3e-20 71.2 21.6 7 9 0.022 11 6.4 0.0 2 22 274 294 273 294 0.91 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF586-201 - 359 5.3e-20 71.2 21.6 8 9 0.0026 1.4 9.3 0.0 2 22 302 322 301 322 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF586-201 - 359 5.3e-20 71.2 21.6 9 9 0.00017 0.09 13.1 0.1 2 22 330 350 329 350 0.94 Zinc-finger double-stranded RNA-binding zf_UBZ PF18439.1 32 ZNF586-201 - 359 1.1e-11 44.0 32.4 1 9 0.00049 0.26 10.9 0.1 2 15 106 119 105 123 0.86 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF586-201 - 359 1.1e-11 44.0 32.4 2 9 0.093 49 3.6 0.1 3 15 135 147 133 154 0.82 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF586-201 - 359 1.1e-11 44.0 32.4 3 9 0.015 8 6.1 0.1 2 13 162 173 161 181 0.84 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF586-201 - 359 1.1e-11 44.0 32.4 4 9 0.0027 1.4 8.6 0.1 3 17 191 206 189 210 0.81 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF586-201 - 359 1.1e-11 44.0 32.4 5 9 0.013 7 6.3 0.1 3 21 219 238 217 238 0.89 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF586-201 - 359 1.1e-11 44.0 32.4 6 9 0.002 1.1 9.0 0.2 3 14 247 258 245 266 0.82 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF586-201 - 359 1.1e-11 44.0 32.4 7 9 0.053 28 4.4 0.1 3 13 274 284 272 289 0.84 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF586-201 - 359 1.1e-11 44.0 32.4 8 9 0.001 0.55 9.9 0.1 3 17 302 317 300 321 0.81 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF586-201 - 359 1.1e-11 44.0 32.4 9 9 0.085 45 3.8 0.2 3 17 330 345 328 349 0.78 Ubiquitin-Binding Zinc Finger zf-C2H2_11 PF16622.5 29 ZNF586-201 - 359 8.2e-11 41.5 52.1 1 9 0.14 76 3.2 1.2 4 20 106 122 104 125 0.78 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF586-201 - 359 8.2e-11 41.5 52.1 2 9 0.0021 1.1 9.0 0.0 6 25 136 155 134 157 0.90 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF586-201 - 359 8.2e-11 41.5 52.1 3 9 8.1e-05 0.043 13.6 0.6 7 26 165 184 162 185 0.94 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF586-201 - 359 8.2e-11 41.5 52.1 4 9 3.1e-05 0.016 14.9 0.1 6 26 192 212 190 213 0.92 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF586-201 - 359 8.2e-11 41.5 52.1 5 9 0.031 16 5.3 0.7 6 25 220 239 218 241 0.87 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF586-201 - 359 8.2e-11 41.5 52.1 6 9 0.11 58 3.6 0.6 6 23 248 265 246 269 0.79 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF586-201 - 359 8.2e-11 41.5 52.1 7 9 0.04 21 5.0 2.8 6 25 275 294 273 296 0.89 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF586-201 - 359 8.2e-11 41.5 52.1 8 9 0.0004 0.21 11.4 0.1 6 26 303 323 301 324 0.92 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF586-201 - 359 8.2e-11 41.5 52.1 9 9 0.016 8.6 6.2 1.6 6 25 331 350 329 352 0.90 zinc-finger C2H2-type zf-LYAR PF08790.11 28 ZNF586-201 - 359 8.6e-11 41.5 31.2 1 10 3.7 1.9e+03 -1.2 0.0 20 24 58 62 57 65 0.81 LYAR-type C2HC zinc finger zf-LYAR PF08790.11 28 ZNF586-201 - 359 8.6e-11 41.5 31.2 2 10 0.072 38 4.3 0.2 1 14 107 120 107 122 0.83 LYAR-type C2HC zinc finger zf-LYAR PF08790.11 28 ZNF586-201 - 359 8.6e-11 41.5 31.2 3 10 0.0036 1.9 8.5 0.0 1 18 135 153 135 155 0.79 LYAR-type C2HC zinc finger zf-LYAR PF08790.11 28 ZNF586-201 - 359 8.6e-11 41.5 31.2 4 10 0.21 1.1e+02 2.8 0.1 2 13 164 175 163 182 0.75 LYAR-type C2HC zinc finger zf-LYAR PF08790.11 28 ZNF586-201 - 359 8.6e-11 41.5 31.2 5 10 0.73 3.8e+02 1.1 0.0 1 13 191 203 191 210 0.75 LYAR-type C2HC zinc finger zf-LYAR PF08790.11 28 ZNF586-201 - 359 8.6e-11 41.5 31.2 6 10 0.0022 1.2 9.1 0.1 1 18 219 237 219 239 0.78 LYAR-type C2HC zinc finger zf-LYAR PF08790.11 28 ZNF586-201 - 359 8.6e-11 41.5 31.2 7 10 0.1 54 3.8 0.2 1 14 247 260 247 266 0.74 LYAR-type C2HC zinc finger zf-LYAR PF08790.11 28 ZNF586-201 - 359 8.6e-11 41.5 31.2 8 10 0.081 43 4.1 0.1 3 14 276 287 275 292 0.84 LYAR-type C2HC zinc finger zf-LYAR PF08790.11 28 ZNF586-201 - 359 8.6e-11 41.5 31.2 9 10 0.0059 3.1 7.8 0.1 1 13 302 314 302 321 0.77 LYAR-type C2HC zinc finger zf-LYAR PF08790.11 28 ZNF586-201 - 359 8.6e-11 41.5 31.2 10 10 3e-05 0.016 15.1 0.7 1 19 330 349 330 350 0.88 LYAR-type C2HC zinc finger DZR PF12773.7 49 ZNF586-201 - 359 1.6e-09 37.6 25.6 1 3 0.00042 0.22 11.6 0.7 13 40 107 146 97 150 0.83 Double zinc ribbon DZR PF12773.7 49 ZNF586-201 - 359 1.6e-09 37.6 25.6 2 3 0.0003 0.16 12.0 3.9 14 49 164 225 153 233 0.59 Double zinc ribbon DZR PF12773.7 49 ZNF586-201 - 359 1.6e-09 37.6 25.6 3 3 0.0071 3.7 7.6 10.3 1 37 249 310 211 346 0.63 Double zinc ribbon Zn-ribbon_8 PF09723.10 40 ZNF586-201 - 359 3.5e-09 36.6 48.9 1 7 0.00028 0.15 12.2 4.7 6 35 107 143 106 148 0.84 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF586-201 - 359 3.5e-09 36.6 48.9 2 7 0.00088 0.46 10.6 6.5 6 34 163 198 162 202 0.89 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF586-201 - 359 3.5e-09 36.6 48.9 3 7 0.0013 0.71 10.0 5.5 6 38 191 230 190 232 0.84 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF586-201 - 359 3.5e-09 36.6 48.9 4 7 0.015 8 6.7 0.5 6 17 219 230 218 243 0.82 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF586-201 - 359 3.5e-09 36.6 48.9 5 7 3e-05 0.016 15.3 2.1 6 38 247 285 246 287 0.86 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF586-201 - 359 3.5e-09 36.6 48.9 6 7 0.0053 2.8 8.1 0.1 6 17 302 313 301 324 0.85 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF586-201 - 359 3.5e-09 36.6 48.9 7 7 0.018 9.7 6.4 0.3 6 21 330 345 329 352 0.81 Zinc ribbon domain XPA_N PF01286.18 32 ZNF586-201 - 359 6.3e-09 35.7 37.3 1 9 0.0031 1.6 8.8 0.8 3 14 108 119 107 124 0.92 XPA protein N-terminal XPA_N PF01286.18 32 ZNF586-201 - 359 6.3e-09 35.7 37.3 2 9 0.0049 2.6 8.2 0.1 3 12 136 145 134 153 0.84 XPA protein N-terminal XPA_N PF01286.18 32 ZNF586-201 - 359 6.3e-09 35.7 37.3 3 9 0.011 6 7.0 0.1 3 12 164 173 162 181 0.84 XPA protein N-terminal XPA_N PF01286.18 32 ZNF586-201 - 359 6.3e-09 35.7 37.3 4 9 0.033 17 5.5 0.1 3 12 192 201 190 210 0.83 XPA protein N-terminal XPA_N PF01286.18 32 ZNF586-201 - 359 6.3e-09 35.7 37.3 5 9 0.0064 3.4 7.8 0.1 3 14 220 231 218 237 0.85 XPA protein N-terminal XPA_N PF01286.18 32 ZNF586-201 - 359 6.3e-09 35.7 37.3 6 9 0.028 15 5.8 0.1 3 11 248 256 246 262 0.89 XPA protein N-terminal XPA_N PF01286.18 32 ZNF586-201 - 359 6.3e-09 35.7 37.3 7 9 0.22 1.2e+02 2.9 0.2 3 12 275 284 273 287 0.87 XPA protein N-terminal XPA_N PF01286.18 32 ZNF586-201 - 359 6.3e-09 35.7 37.3 8 9 0.034 18 5.5 0.1 3 13 303 313 301 321 0.83 XPA protein N-terminal XPA_N PF01286.18 32 ZNF586-201 - 359 6.3e-09 35.7 37.3 9 9 0.021 11 6.1 0.3 3 14 331 342 329 345 0.89 XPA protein N-terminal zf-C2H2_8 PF15909.5 98 ZNF586-201 - 359 2.8e-07 30.7 35.3 1 6 2.8 1.5e+03 -0.4 0.1 8 47 59 100 54 106 0.67 C2H2-type zinc ribbon zf-C2H2_8 PF15909.5 98 ZNF586-201 - 359 2.8e-07 30.7 35.3 2 6 0.003 1.6 9.1 4.5 23 90 94 158 81 164 0.82 C2H2-type zinc ribbon zf-C2H2_8 PF15909.5 98 ZNF586-201 - 359 2.8e-07 30.7 35.3 3 6 7.4e-06 0.0039 17.5 1.1 33 90 160 214 156 218 0.88 C2H2-type zinc ribbon zf-C2H2_8 PF15909.5 98 ZNF586-201 - 359 2.8e-07 30.7 35.3 4 6 0.012 6.5 7.1 3.3 41 91 222 271 215 276 0.85 C2H2-type zinc ribbon zf-C2H2_8 PF15909.5 98 ZNF586-201 - 359 2.8e-07 30.7 35.3 5 6 1.8e-05 0.0093 16.2 1.1 32 90 270 325 265 329 0.87 C2H2-type zinc ribbon zf-C2H2_8 PF15909.5 98 ZNF586-201 - 359 2.8e-07 30.7 35.3 6 6 0.0019 0.98 9.8 0.9 37 88 303 351 297 355 0.81 C2H2-type zinc ribbon zinc_ribbon_15 PF17032.5 86 ZNF586-201 - 359 2.8e-07 31.2 30.0 1 7 0.063 33 5.3 0.9 39 78 80 119 45 125 0.72 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF586-201 - 359 2.8e-07 31.2 30.0 2 7 0.029 15 6.4 7.8 32 78 101 147 80 177 0.81 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF586-201 - 359 2.8e-07 31.2 30.0 3 7 0.0015 0.77 10.5 1.5 30 78 155 203 148 209 0.86 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF586-201 - 359 2.8e-07 31.2 30.0 4 7 0.00073 0.39 11.5 0.4 30 77 183 230 173 234 0.86 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF586-201 - 359 2.8e-07 31.2 30.0 5 7 0.001 0.54 11.1 0.5 26 75 207 256 204 262 0.87 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF586-201 - 359 2.8e-07 31.2 30.0 6 7 0.0043 2.3 9.1 1.2 32 78 241 286 234 292 0.78 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF586-201 - 359 2.8e-07 31.2 30.0 7 7 0.00015 0.081 13.7 0.3 29 81 293 345 287 347 0.88 zinc-ribbon family YhfH PF14149.6 37 ZNF586-201 - 359 3e-07 30.3 28.7 1 9 0.012 6.6 6.8 0.2 15 25 108 118 101 121 0.83 YhfH-like protein YhfH PF14149.6 37 ZNF586-201 - 359 3e-07 30.3 28.7 2 9 0.014 7.4 6.7 0.1 15 26 136 147 131 149 0.90 YhfH-like protein YhfH PF14149.6 37 ZNF586-201 - 359 3e-07 30.3 28.7 3 9 0.087 46 4.1 0.1 15 22 164 171 161 174 0.87 YhfH-like protein YhfH PF14149.6 37 ZNF586-201 - 359 3e-07 30.3 28.7 4 9 0.043 23 5.1 0.0 15 26 192 203 190 205 0.86 YhfH-like protein YhfH PF14149.6 37 ZNF586-201 - 359 3e-07 30.3 28.7 5 9 0.057 30 4.7 0.1 15 23 220 228 218 231 0.87 YhfH-like protein YhfH PF14149.6 37 ZNF586-201 - 359 3e-07 30.3 28.7 6 9 0.061 32 4.6 0.1 15 23 248 256 246 258 0.87 YhfH-like protein YhfH PF14149.6 37 ZNF586-201 - 359 3e-07 30.3 28.7 7 9 0.23 1.2e+02 2.7 0.3 15 23 275 283 272 287 0.82 YhfH-like protein YhfH PF14149.6 37 ZNF586-201 - 359 3e-07 30.3 28.7 8 9 0.02 11 6.1 0.0 15 26 303 314 301 316 0.88 YhfH-like protein YhfH PF14149.6 37 ZNF586-201 - 359 3e-07 30.3 28.7 9 9 0.23 1.2e+02 2.7 0.1 15 23 331 339 329 343 0.86 YhfH-like protein # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF586-201.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF586-201.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF586-201.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF586-201.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF586-201.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:10:15 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF586-202.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF586-202.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF586-202.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF586-202.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF586-202.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:10:16 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZNF586-203 - 402 9e-78 253.5 68.4 1 12 0.00031 0.17 12.4 0.1 9 26 82 99 74 99 0.90 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF586-203 - 402 9e-78 253.5 68.4 2 12 0.0003 0.16 12.4 0.9 4 24 111 131 108 133 0.86 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF586-203 - 402 9e-78 253.5 68.4 3 12 4.3e-08 2.4e-05 24.6 3.6 5 24 140 159 137 161 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF586-203 - 402 9e-78 253.5 68.4 4 12 4.9e-07 0.00027 21.2 0.1 8 25 171 188 168 189 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF586-203 - 402 9e-78 253.5 68.4 5 12 4.8e-08 2.6e-05 24.4 0.3 2 25 193 216 192 217 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF586-203 - 402 9e-78 253.5 68.4 6 12 1.1e-10 5.7e-08 32.8 0.2 2 25 221 244 220 245 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF586-203 - 402 9e-78 253.5 68.4 7 12 4.8e-11 2.6e-08 33.9 0.3 2 25 249 272 248 273 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF586-203 - 402 9e-78 253.5 68.4 8 12 2.7e-10 1.5e-07 31.5 0.4 2 25 277 300 276 300 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF586-203 - 402 9e-78 253.5 68.4 9 12 3.6e-07 0.00019 21.7 1.3 1 25 304 327 304 328 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF586-203 - 402 9e-78 253.5 68.4 10 12 6.7e-11 3.6e-08 33.5 0.0 5 25 335 355 331 356 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF586-203 - 402 9e-78 253.5 68.4 11 12 2e-11 1.1e-08 35.1 0.5 2 26 360 384 359 384 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF586-203 - 402 9e-78 253.5 68.4 12 12 0.00016 0.088 13.3 0.6 2 16 388 402 387 402 0.92 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZNF586-203 - 402 5.6e-52 171.4 68.9 1 10 4.9 2.7e+03 -0.8 0.1 5 17 89 104 87 105 0.79 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF586-203 - 402 5.6e-52 171.4 68.9 2 10 8.2e-05 0.045 14.2 0.4 1 16 150 165 150 167 0.93 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF586-203 - 402 5.6e-52 171.4 68.9 3 10 1.4e-05 0.0074 16.7 0.1 1 23 178 200 178 200 0.95 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF586-203 - 402 5.6e-52 171.4 68.9 4 10 9.2e-09 5e-06 26.7 0.6 1 23 206 228 206 228 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF586-203 - 402 5.6e-52 171.4 68.9 5 10 1.8e-08 9.7e-06 25.8 0.2 1 23 234 256 234 256 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF586-203 - 402 5.6e-52 171.4 68.9 6 10 2.2e-09 1.2e-06 28.6 0.7 1 23 262 284 262 284 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF586-203 - 402 5.6e-52 171.4 68.9 7 10 1.1e-08 6.1e-06 26.4 1.6 1 23 290 312 290 312 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF586-203 - 402 5.6e-52 171.4 68.9 8 10 4.6e-09 2.5e-06 27.6 1.0 1 23 317 339 317 339 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF586-203 - 402 5.6e-52 171.4 68.9 9 10 3.8e-09 2.1e-06 27.9 0.2 1 23 345 367 345 367 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF586-203 - 402 5.6e-52 171.4 68.9 10 10 1.6e-07 8.6e-05 22.8 3.5 1 23 373 395 373 395 0.96 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZNF586-203 - 402 2e-33 112.1 65.6 1 10 7.3 4e+03 -0.8 1.1 7 23 128 144 122 145 0.79 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF586-203 - 402 2e-33 112.1 65.6 2 10 0.00068 0.37 11.8 0.7 1 18 150 167 150 172 0.85 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF586-203 - 402 2e-33 112.1 65.6 3 10 1.1e-05 0.0059 17.3 0.2 1 23 178 200 178 201 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF586-203 - 402 2e-33 112.1 65.6 4 10 1.4e-05 0.0077 17.0 0.5 1 23 206 228 206 229 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF586-203 - 402 2e-33 112.1 65.6 5 10 1.6e-06 0.00084 20.0 0.3 1 23 234 256 234 257 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF586-203 - 402 2e-33 112.1 65.6 6 10 5.3e-06 0.0029 18.3 0.9 1 23 262 284 262 285 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF586-203 - 402 2e-33 112.1 65.6 7 10 1.1e-05 0.006 17.3 1.5 1 23 290 312 290 313 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF586-203 - 402 2e-33 112.1 65.6 8 10 3.4e-06 0.0019 18.9 1.0 1 23 317 339 317 340 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF586-203 - 402 2e-33 112.1 65.6 9 10 1.7e-06 0.00094 19.8 0.3 1 23 345 367 345 368 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF586-203 - 402 2e-33 112.1 65.6 10 10 8.1e-05 0.044 14.6 2.6 1 23 373 395 373 396 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF586-203 - 402 5e-24 83.8 57.0 1 10 9.5 5.2e+03 -2.4 0.0 8 15 140 147 140 147 0.87 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF586-203 - 402 5e-24 83.8 57.0 2 10 9.3e-05 0.05 13.6 1.3 2 12 150 160 149 162 0.92 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF586-203 - 402 5e-24 83.8 57.0 3 10 0.0012 0.64 10.1 0.3 2 24 178 200 178 202 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF586-203 - 402 5e-24 83.8 57.0 4 10 4.6e-08 2.5e-05 24.1 0.5 1 24 205 228 205 231 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF586-203 - 402 5e-24 83.8 57.0 5 10 1.1e-05 0.0062 16.5 0.3 2 24 234 256 234 259 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF586-203 - 402 5e-24 83.8 57.0 6 10 0.0006 0.32 11.0 0.8 2 24 262 284 262 287 0.83 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF586-203 - 402 5e-24 83.8 57.0 7 10 7.2e-05 0.039 14.0 0.9 2 19 290 307 290 314 0.77 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF586-203 - 402 5e-24 83.8 57.0 8 10 6.4e-05 0.035 14.1 0.9 1 24 316 339 316 342 0.91 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF586-203 - 402 5e-24 83.8 57.0 9 10 9.6e-05 0.052 13.6 0.3 2 24 345 367 345 370 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF586-203 - 402 5e-24 83.8 57.0 10 10 0.18 99 3.1 0.7 2 12 373 383 373 391 0.94 C2H2-type zinc finger KRAB PF01352.27 42 ZNF586-203 - 402 2.4e-21 75.1 0.3 1 1 6.8e-24 3.7e-21 74.5 0.3 1 42 14 55 14 55 0.99 KRAB box zf-C2H2_jaz PF12171.8 27 ZNF586-203 - 402 1.8e-19 69.5 21.6 1 9 0.076 42 4.6 0.1 2 17 150 165 149 167 0.82 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF586-203 - 402 1.8e-19 69.5 21.6 2 9 0.0003 0.16 12.3 0.1 2 22 178 198 177 198 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF586-203 - 402 1.8e-19 69.5 21.6 3 9 0.2 1.1e+02 3.3 0.2 2 20 206 224 205 226 0.77 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF586-203 - 402 1.8e-19 69.5 21.6 4 9 0.0016 0.85 10.0 0.0 2 22 234 254 233 254 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF586-203 - 402 1.8e-19 69.5 21.6 5 9 2.9e-05 0.016 15.5 0.0 2 22 262 282 261 282 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF586-203 - 402 1.8e-19 69.5 21.6 6 9 0.14 75 3.8 0.1 2 12 290 300 289 309 0.90 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF586-203 - 402 1.8e-19 69.5 21.6 7 9 0.024 13 6.2 0.0 2 22 317 337 316 337 0.91 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF586-203 - 402 1.8e-19 69.5 21.6 8 9 0.0029 1.6 9.1 0.0 2 22 345 365 344 365 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF586-203 - 402 1.8e-19 69.5 21.6 9 9 0.00019 0.1 12.9 0.1 2 22 373 393 372 393 0.94 Zinc-finger double-stranded RNA-binding zf_UBZ PF18439.1 32 ZNF586-203 - 402 3.6e-11 42.4 32.4 1 9 0.00054 0.29 10.8 0.1 2 15 149 162 148 166 0.86 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF586-203 - 402 3.6e-11 42.4 32.4 2 9 0.1 56 3.4 0.1 3 15 178 190 176 197 0.82 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF586-203 - 402 3.6e-11 42.4 32.4 3 9 0.017 9.2 6.0 0.1 2 13 205 216 204 224 0.84 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF586-203 - 402 3.6e-11 42.4 32.4 4 9 0.003 1.6 8.4 0.1 3 17 234 249 232 253 0.81 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF586-203 - 402 3.6e-11 42.4 32.4 5 9 0.015 8 6.2 0.1 3 21 262 281 260 281 0.89 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF586-203 - 402 3.6e-11 42.4 32.4 6 9 0.0022 1.2 8.8 0.2 3 14 290 301 288 309 0.82 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF586-203 - 402 3.6e-11 42.4 32.4 7 9 0.059 32 4.2 0.1 3 13 317 327 315 332 0.84 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF586-203 - 402 3.6e-11 42.4 32.4 8 9 0.0012 0.63 9.7 0.1 3 17 345 360 343 364 0.81 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF586-203 - 402 3.6e-11 42.4 32.4 9 9 0.094 51 3.6 0.2 3 17 373 388 371 392 0.78 Ubiquitin-Binding Zinc Finger zf-C2H2_11 PF16622.5 29 ZNF586-203 - 402 2.5e-10 39.9 52.1 1 9 0.16 87 3.0 1.2 4 20 149 165 147 168 0.78 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF586-203 - 402 2.5e-10 39.9 52.1 2 9 0.0024 1.3 8.9 0.0 6 25 179 198 177 200 0.90 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF586-203 - 402 2.5e-10 39.9 52.1 3 9 9.1e-05 0.049 13.4 0.6 7 26 208 227 205 228 0.94 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF586-203 - 402 2.5e-10 39.9 52.1 4 9 3.4e-05 0.019 14.7 0.1 6 26 235 255 233 256 0.92 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF586-203 - 402 2.5e-10 39.9 52.1 5 9 0.034 19 5.1 0.7 6 25 263 282 261 284 0.87 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF586-203 - 402 2.5e-10 39.9 52.1 6 9 0.12 66 3.4 0.6 6 23 291 308 289 312 0.79 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF586-203 - 402 2.5e-10 39.9 52.1 7 9 0.045 24 4.8 2.8 6 25 318 337 316 339 0.89 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF586-203 - 402 2.5e-10 39.9 52.1 8 9 0.00045 0.24 11.2 0.1 6 26 346 366 344 367 0.92 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF586-203 - 402 2.5e-10 39.9 52.1 9 9 0.018 9.8 6.0 1.6 6 25 374 393 372 395 0.90 zinc-finger C2H2-type zf-LYAR PF08790.11 28 ZNF586-203 - 402 2.7e-10 40.0 31.2 1 10 4 2.2e+03 -1.3 0.0 20 24 101 105 100 108 0.81 LYAR-type C2HC zinc finger zf-LYAR PF08790.11 28 ZNF586-203 - 402 2.7e-10 40.0 31.2 2 10 0.08 43 4.1 0.2 1 14 150 163 150 165 0.83 LYAR-type C2HC zinc finger zf-LYAR PF08790.11 28 ZNF586-203 - 402 2.7e-10 40.0 31.2 3 10 0.004 2.2 8.3 0.0 1 18 178 196 178 198 0.79 LYAR-type C2HC zinc finger zf-LYAR PF08790.11 28 ZNF586-203 - 402 2.7e-10 40.0 31.2 4 10 0.23 1.3e+02 2.6 0.1 2 13 207 218 206 225 0.75 LYAR-type C2HC zinc finger zf-LYAR PF08790.11 28 ZNF586-203 - 402 2.7e-10 40.0 31.2 5 10 0.81 4.4e+02 0.9 0.0 1 13 234 246 234 253 0.75 LYAR-type C2HC zinc finger zf-LYAR PF08790.11 28 ZNF586-203 - 402 2.7e-10 40.0 31.2 6 10 0.0025 1.4 8.9 0.1 1 18 262 280 262 282 0.77 LYAR-type C2HC zinc finger zf-LYAR PF08790.11 28 ZNF586-203 - 402 2.7e-10 40.0 31.2 7 10 0.11 61 3.6 0.2 1 14 290 303 290 309 0.74 LYAR-type C2HC zinc finger zf-LYAR PF08790.11 28 ZNF586-203 - 402 2.7e-10 40.0 31.2 8 10 0.09 49 4.0 0.1 3 14 319 330 318 335 0.84 LYAR-type C2HC zinc finger zf-LYAR PF08790.11 28 ZNF586-203 - 402 2.7e-10 40.0 31.2 9 10 0.0066 3.6 7.6 0.1 1 13 345 357 345 364 0.77 LYAR-type C2HC zinc finger zf-LYAR PF08790.11 28 ZNF586-203 - 402 2.7e-10 40.0 31.2 10 10 3.3e-05 0.018 14.9 0.7 1 19 373 392 373 393 0.88 LYAR-type C2HC zinc finger DZR PF12773.7 49 ZNF586-203 - 402 3.5e-09 36.5 25.6 1 3 0.00048 0.26 11.3 0.7 13 40 150 189 140 193 0.83 Double zinc ribbon DZR PF12773.7 49 ZNF586-203 - 402 3.5e-09 36.5 25.6 2 3 0.00017 0.091 12.8 1.1 9 41 200 246 196 252 0.79 Double zinc ribbon DZR PF12773.7 49 ZNF586-203 - 402 3.5e-09 36.5 25.6 3 3 0.0089 4.8 7.3 10.4 1 37 292 353 254 389 0.63 Double zinc ribbon Zn-ribbon_8 PF09723.10 40 ZNF586-203 - 402 6.3e-09 35.8 48.3 1 8 0.00027 0.15 12.2 4.5 6 35 150 186 149 191 0.84 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF586-203 - 402 6.3e-09 35.8 48.3 2 8 0.087 47 4.2 0.4 6 16 178 188 177 195 0.85 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF586-203 - 402 6.3e-09 35.8 48.3 3 8 0.00072 0.39 10.9 6.1 6 34 206 241 205 246 0.89 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF586-203 - 402 6.3e-09 35.8 48.3 4 8 0.0018 0.95 9.6 5.6 6 38 234 273 233 274 0.83 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF586-203 - 402 6.3e-09 35.8 48.3 5 8 0.017 9.3 6.5 0.5 6 17 262 273 261 286 0.82 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF586-203 - 402 6.3e-09 35.8 48.3 6 8 3.4e-05 0.018 15.1 2.1 6 38 290 328 289 330 0.86 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF586-203 - 402 6.3e-09 35.8 48.3 7 8 0.0058 3.2 8.0 0.1 6 17 345 356 344 368 0.85 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF586-203 - 402 6.3e-09 35.8 48.3 8 8 0.02 11 6.2 0.3 6 21 373 388 372 395 0.81 Zinc ribbon domain XPA_N PF01286.18 32 ZNF586-203 - 402 2e-08 34.2 37.2 1 9 0.0034 1.8 8.6 0.8 3 14 151 162 150 167 0.92 XPA protein N-terminal XPA_N PF01286.18 32 ZNF586-203 - 402 2e-08 34.2 37.2 2 9 0.0054 3 8.0 0.1 3 12 179 188 177 196 0.84 XPA protein N-terminal XPA_N PF01286.18 32 ZNF586-203 - 402 2e-08 34.2 37.2 3 9 0.013 6.8 6.8 0.1 3 12 207 216 205 224 0.84 XPA protein N-terminal XPA_N PF01286.18 32 ZNF586-203 - 402 2e-08 34.2 37.2 4 9 0.036 20 5.4 0.1 3 12 235 244 233 253 0.83 XPA protein N-terminal XPA_N PF01286.18 32 ZNF586-203 - 402 2e-08 34.2 37.2 5 9 0.0071 3.8 7.6 0.1 3 14 263 274 261 280 0.85 XPA protein N-terminal XPA_N PF01286.18 32 ZNF586-203 - 402 2e-08 34.2 37.2 6 9 0.031 17 5.6 0.1 3 11 291 299 289 305 0.89 XPA protein N-terminal XPA_N PF01286.18 32 ZNF586-203 - 402 2e-08 34.2 37.2 7 9 0.25 1.3e+02 2.7 0.2 3 12 318 327 316 330 0.87 XPA protein N-terminal XPA_N PF01286.18 32 ZNF586-203 - 402 2e-08 34.2 37.2 8 9 0.037 20 5.3 0.1 3 13 346 356 344 364 0.83 XPA protein N-terminal XPA_N PF01286.18 32 ZNF586-203 - 402 2e-08 34.2 37.2 9 9 0.023 13 6.0 0.3 3 14 374 385 372 388 0.89 XPA protein N-terminal zf-C2H2_8 PF15909.5 98 ZNF586-203 - 402 4.1e-07 30.2 34.7 1 5 0.0055 3 8.2 5.3 23 90 137 201 98 206 0.85 C2H2-type zinc ribbon zf-C2H2_8 PF15909.5 98 ZNF586-203 - 402 4.1e-07 30.2 34.7 2 5 9e-06 0.0049 17.1 1.2 33 90 203 257 199 261 0.88 C2H2-type zinc ribbon zf-C2H2_8 PF15909.5 98 ZNF586-203 - 402 4.1e-07 30.2 34.7 3 5 0.012 6.4 7.1 3.3 41 92 265 315 256 320 0.85 C2H2-type zinc ribbon zf-C2H2_8 PF15909.5 98 ZNF586-203 - 402 4.1e-07 30.2 34.7 4 5 2.1e-05 0.011 16.0 1.1 32 90 313 368 308 372 0.87 C2H2-type zinc ribbon zf-C2H2_8 PF15909.5 98 ZNF586-203 - 402 4.1e-07 30.2 34.7 5 5 0.006 3.3 8.1 1.3 41 88 348 394 346 398 0.85 C2H2-type zinc ribbon zinc_ribbon_15 PF17032.5 86 ZNF586-203 - 402 4.4e-07 30.5 29.5 1 7 0.077 42 5.0 0.8 38 78 122 162 88 165 0.73 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF586-203 - 402 4.4e-07 30.5 29.5 2 7 0.015 8.3 7.2 6.5 33 78 145 190 139 221 0.77 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF586-203 - 402 4.4e-07 30.5 29.5 3 7 0.0018 0.96 10.2 1.6 30 78 198 246 190 249 0.85 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF586-203 - 402 4.4e-07 30.5 29.5 4 7 0.00096 0.52 11.1 0.4 30 77 226 273 220 277 0.86 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF586-203 - 402 4.4e-07 30.5 29.5 5 7 0.0011 0.62 10.9 0.5 26 75 250 299 247 305 0.87 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF586-203 - 402 4.4e-07 30.5 29.5 6 7 0.0046 2.5 8.9 1.1 32 78 284 329 277 334 0.78 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF586-203 - 402 4.4e-07 30.5 29.5 7 7 0.00017 0.094 13.5 0.3 29 81 336 388 329 390 0.88 zinc-ribbon family YhfH PF14149.6 37 ZNF586-203 - 402 9.3e-07 28.7 28.7 1 9 0.014 7.5 6.6 0.2 15 25 151 161 144 164 0.83 YhfH-like protein YhfH PF14149.6 37 ZNF586-203 - 402 9.3e-07 28.7 28.7 2 9 0.015 8.4 6.5 0.1 15 26 179 190 174 192 0.90 YhfH-like protein YhfH PF14149.6 37 ZNF586-203 - 402 9.3e-07 28.7 28.7 3 9 0.096 52 3.9 0.1 15 22 207 214 204 217 0.87 YhfH-like protein YhfH PF14149.6 37 ZNF586-203 - 402 9.3e-07 28.7 28.7 4 9 0.047 26 4.9 0.0 15 26 235 246 233 248 0.86 YhfH-like protein YhfH PF14149.6 37 ZNF586-203 - 402 9.3e-07 28.7 28.7 5 9 0.062 34 4.5 0.1 15 23 263 271 261 274 0.87 YhfH-like protein YhfH PF14149.6 37 ZNF586-203 - 402 9.3e-07 28.7 28.7 6 9 0.068 37 4.4 0.1 15 23 291 299 289 301 0.87 YhfH-like protein YhfH PF14149.6 37 ZNF586-203 - 402 9.3e-07 28.7 28.7 7 9 0.26 1.4e+02 2.6 0.3 15 23 318 326 315 330 0.82 YhfH-like protein YhfH PF14149.6 37 ZNF586-203 - 402 9.3e-07 28.7 28.7 8 9 0.022 12 6.0 0.0 15 26 346 357 344 359 0.88 YhfH-like protein YhfH PF14149.6 37 ZNF586-203 - 402 9.3e-07 28.7 28.7 9 9 0.26 1.4e+02 2.6 0.1 15 23 374 382 372 386 0.86 YhfH-like protein # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF586-203.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF586-203.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF586-203.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF586-203.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF586-203.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:10:16 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- KRAB PF01352.27 42 ZNF586-204 - 76 1.4e-20 72.6 0.2 1 1 1.1e-24 1.9e-20 72.2 0.2 1 42 14 55 14 55 0.99 KRAB box # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF586-204.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF586-204.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF586-204.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF586-204.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF586-204.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:10:16 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- KRAB PF01352.27 42 ZNF586-205 - 101 3.1e-20 71.6 0.2 1 1 2.1e-24 3.8e-20 71.2 0.2 1 42 14 55 14 55 0.99 KRAB box # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF586-205.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF586-205.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF586-205.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF586-205.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF586-205.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:10:17 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF586-206.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF586-206.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF586-206.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF586-206.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF586-206.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:10:17 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZNF587-201 - 575 3.8e-78 254.7 95.6 1 16 2.2 3.3e+03 -1.2 0.3 11 21 88 98 85 98 0.81 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF587-201 - 575 3.8e-78 254.7 95.6 2 16 3.1 4.6e+03 -1.6 0.8 4 13 109 118 106 127 0.79 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF587-201 - 575 3.8e-78 254.7 95.6 3 16 0.12 1.8e+02 2.8 1.2 4 15 137 148 134 149 0.87 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF587-201 - 575 3.8e-78 254.7 95.6 4 16 1.4 2.1e+03 -0.6 0.2 11 26 208 223 201 223 0.81 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF587-201 - 575 3.8e-78 254.7 95.6 5 16 0.01 15 6.2 0.8 15 25 240 250 224 251 0.81 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF587-201 - 575 3.8e-78 254.7 95.6 6 16 6.8e-07 0.001 19.4 0.3 2 25 255 278 254 279 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF587-201 - 575 3.8e-78 254.7 95.6 7 16 1.3e-09 1.9e-06 28.0 0.1 2 25 283 306 282 307 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF587-201 - 575 3.8e-78 254.7 95.6 8 16 2e-09 2.9e-06 27.4 0.0 2 25 311 334 310 335 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF587-201 - 575 3.8e-78 254.7 95.6 9 16 1.3e-07 0.00019 21.7 0.2 1 25 338 362 338 363 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF587-201 - 575 3.8e-78 254.7 95.6 10 16 3.4e-10 5.1e-07 29.8 0.4 4 25 369 390 367 391 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF587-201 - 575 3.8e-78 254.7 95.6 11 16 7.3e-11 1.1e-07 32.0 1.9 1 25 394 418 394 419 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF587-201 - 575 3.8e-78 254.7 95.6 12 16 1.1e-09 1.6e-06 28.3 1.6 1 25 422 446 422 447 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF587-201 - 575 3.8e-78 254.7 95.6 13 16 9.4e-10 1.4e-06 28.4 0.2 2 26 451 475 450 475 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF587-201 - 575 3.8e-78 254.7 95.6 14 16 5.9e-11 8.9e-08 32.2 0.1 5 25 482 502 478 503 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF587-201 - 575 3.8e-78 254.7 95.6 15 16 1e-09 1.5e-06 28.4 1.6 5 25 510 530 506 531 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF587-201 - 575 3.8e-78 254.7 95.6 16 16 3.5e-11 5.3e-08 33.0 1.0 2 24 535 557 534 559 0.94 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZNF587-201 - 575 1.8e-64 210.8 113.7 1 15 0.017 25 5.6 1.5 1 23 92 114 92 115 0.94 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF587-201 - 575 1.8e-64 210.8 113.7 2 15 0.057 85 3.9 0.1 6 23 125 142 123 142 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF587-201 - 575 1.8e-64 210.8 113.7 3 15 1.5 2.2e+03 -0.5 0.1 6 19 214 230 212 233 0.69 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF587-201 - 575 1.8e-64 210.8 113.7 4 15 5.3e-08 7.9e-05 22.9 1.6 1 23 240 262 240 262 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF587-201 - 575 1.8e-64 210.8 113.7 5 15 2.2e-09 3.3e-06 27.2 0.5 1 23 268 290 268 290 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF587-201 - 575 1.8e-64 210.8 113.7 6 15 6.5e-09 9.7e-06 25.8 0.1 1 23 296 318 296 318 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF587-201 - 575 1.8e-64 210.8 113.7 7 15 5.9e-08 8.8e-05 22.7 0.1 1 23 324 346 324 346 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF587-201 - 575 1.8e-64 210.8 113.7 8 15 1.7e-06 0.0026 18.1 5.4 1 23 352 374 352 374 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF587-201 - 575 1.8e-64 210.8 113.7 9 15 3.1e-09 4.7e-06 26.8 0.6 1 23 380 402 380 402 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF587-201 - 575 1.8e-64 210.8 113.7 10 15 3.7e-09 5.5e-06 26.5 3.5 1 23 408 430 408 430 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF587-201 - 575 1.8e-64 210.8 113.7 11 15 3.1e-07 0.00047 20.5 2.2 1 23 436 458 436 458 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF587-201 - 575 1.8e-64 210.8 113.7 12 15 1.3e-05 0.02 15.3 0.4 1 23 464 486 464 486 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF587-201 - 575 1.8e-64 210.8 113.7 13 15 1.4e-06 0.0021 18.4 1.1 1 23 492 514 492 514 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF587-201 - 575 1.8e-64 210.8 113.7 14 15 1.9e-08 2.8e-05 24.3 3.0 1 23 520 542 520 542 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF587-201 - 575 1.8e-64 210.8 113.7 15 15 2.3e-07 0.00035 20.9 3.8 1 23 548 570 548 570 0.98 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZNF587-201 - 575 1.5e-39 131.2 110.9 1 15 0.0018 2.7 9.0 1.9 1 24 92 115 92 115 0.97 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF587-201 - 575 1.5e-39 131.2 110.9 2 15 0.12 1.8e+02 3.4 0.1 6 23 125 142 123 143 0.91 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF587-201 - 575 1.5e-39 131.2 110.9 3 15 5.6 8.3e+03 -1.8 0.1 7 20 218 231 212 233 0.73 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF587-201 - 575 1.5e-39 131.2 110.9 4 15 2.8e-06 0.0043 17.8 1.1 1 23 240 262 240 263 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF587-201 - 575 1.5e-39 131.2 110.9 5 15 1.7e-05 0.025 15.4 0.4 3 23 270 290 268 291 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF587-201 - 575 1.5e-39 131.2 110.9 6 15 2.3e-06 0.0035 18.1 0.3 1 23 296 318 296 319 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF587-201 - 575 1.5e-39 131.2 110.9 7 15 2.2e-05 0.033 15.0 0.1 1 23 324 346 324 347 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF587-201 - 575 1.5e-39 131.2 110.9 8 15 0.00079 1.2 10.2 4.6 1 23 352 374 352 375 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF587-201 - 575 1.5e-39 131.2 110.9 9 15 1e-05 0.015 16.1 0.5 1 23 380 402 380 403 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF587-201 - 575 1.5e-39 131.2 110.9 10 15 4.3e-05 0.064 14.1 2.7 1 23 408 430 408 431 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF587-201 - 575 1.5e-39 131.2 110.9 11 15 2.1e-05 0.032 15.1 1.7 1 23 436 458 436 459 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF587-201 - 575 1.5e-39 131.2 110.9 12 15 0.00027 0.41 11.6 0.4 1 23 464 486 464 487 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF587-201 - 575 1.5e-39 131.2 110.9 13 15 2.3e-06 0.0034 18.1 1.8 1 23 492 514 492 515 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF587-201 - 575 1.5e-39 131.2 110.9 14 15 1e-06 0.0015 19.2 2.8 1 23 520 542 520 543 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF587-201 - 575 1.5e-39 131.2 110.9 15 15 7.2e-06 0.011 16.5 3.2 1 23 548 570 548 571 0.95 C2H2-type zinc finger KRAB PF01352.27 42 ZNF587-201 - 575 9.2e-23 79.6 0.2 1 1 1.2e-25 1.8e-22 78.7 0.2 2 42 15 55 14 55 0.98 KRAB box zf-C2H2_6 PF13912.6 27 ZNF587-201 - 575 8.6e-18 63.9 95.6 1 13 6.4 9.6e+03 -3.2 0.1 1 8 91 98 91 98 0.85 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF587-201 - 575 8.6e-18 63.9 95.6 2 13 0.00046 0.69 10.0 3.1 2 24 240 262 239 265 0.85 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF587-201 - 575 8.6e-18 63.9 95.6 3 13 0.0051 7.7 6.6 1.0 2 24 268 290 268 293 0.87 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF587-201 - 575 8.6e-18 63.9 95.6 4 13 0.00036 0.54 10.3 0.3 1 18 295 312 295 315 0.78 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF587-201 - 575 8.6e-18 63.9 95.6 5 13 0.00052 0.77 9.8 0.3 2 12 324 334 324 344 0.85 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF587-201 - 575 8.6e-18 63.9 95.6 6 13 0.0078 12 6.1 0.4 1 12 351 362 351 363 0.89 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF587-201 - 575 8.6e-18 63.9 95.6 7 13 0.0026 3.9 7.6 0.4 2 12 380 390 380 402 0.91 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF587-201 - 575 8.6e-18 63.9 95.6 8 13 2.4e-05 0.035 14.1 2.9 2 22 408 428 408 432 0.86 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF587-201 - 575 8.6e-18 63.9 95.6 9 13 0.0032 4.7 7.3 0.5 2 13 436 447 436 458 0.87 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF587-201 - 575 8.6e-18 63.9 95.6 10 13 0.022 34 4.6 0.2 2 11 464 473 464 474 0.90 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF587-201 - 575 8.6e-18 63.9 95.6 11 13 6.6e-06 0.0098 15.9 2.8 2 25 492 515 492 517 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF587-201 - 575 8.6e-18 63.9 95.6 12 13 1.7e-06 0.0026 17.7 3.0 2 24 520 542 520 545 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF587-201 - 575 8.6e-18 63.9 95.6 13 13 0.00055 0.82 9.7 5.6 2 26 548 572 548 573 0.94 C2H2-type zinc finger Zn-ribbon_8 PF09723.10 40 ZNF587-201 - 575 5e-08 32.9 76.4 1 13 0.27 4e+02 1.2 0.2 8 27 94 113 90 117 0.76 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF587-201 - 575 5e-08 32.9 76.4 2 13 6.8e-05 0.1 12.7 3.0 6 38 240 279 239 281 0.75 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF587-201 - 575 5e-08 32.9 76.4 3 13 0.0063 9.5 6.4 4.7 6 35 268 304 267 309 0.82 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF587-201 - 575 5e-08 32.9 76.4 4 13 0.015 23 5.2 6.5 6 34 296 331 294 331 0.82 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF587-201 - 575 5e-08 32.9 76.4 5 13 0.0069 10 6.3 7.0 6 38 324 363 323 365 0.83 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF587-201 - 575 5e-08 32.9 76.4 6 13 0.0082 12 6.1 7.8 6 34 352 387 351 391 0.89 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF587-201 - 575 5e-08 32.9 76.4 7 13 0.0012 1.7 8.8 6.1 6 35 380 416 379 418 0.88 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF587-201 - 575 5e-08 32.9 76.4 8 13 7.5e-05 0.11 12.6 4.6 6 38 408 447 407 449 0.89 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF587-201 - 575 5e-08 32.9 76.4 9 13 0.00069 1 9.5 1.9 6 34 436 471 435 473 0.86 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF587-201 - 575 5e-08 32.9 76.4 10 13 0.0018 2.8 8.2 3.3 6 34 464 499 463 505 0.89 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF587-201 - 575 5e-08 32.9 76.4 11 13 0.013 19 5.5 0.7 6 15 492 501 491 510 0.89 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF587-201 - 575 5e-08 32.9 76.4 12 13 0.00014 0.21 11.7 7.3 6 38 520 559 519 560 0.91 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF587-201 - 575 5e-08 32.9 76.4 13 13 0.0012 1.8 8.7 0.4 6 17 548 559 547 571 0.83 Zinc ribbon domain zf_UBZ PF18439.1 32 ZNF587-201 - 575 8.5e-08 31.7 64.4 1 15 4.6 6.9e+03 -3.2 0.0 8 15 67 74 67 78 0.80 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF587-201 - 575 8.5e-08 31.7 64.4 2 15 2.7 4e+03 -2.5 0.1 3 9 92 98 91 103 0.82 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF587-201 - 575 8.5e-08 31.7 64.4 3 15 7.2 1.1e+04 -3.9 0.3 23 26 105 108 105 109 0.91 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF587-201 - 575 8.5e-08 31.7 64.4 4 15 0.0004 0.59 9.8 0.3 2 14 239 251 238 259 0.79 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF587-201 - 575 8.5e-08 31.7 64.4 5 15 0.013 19 5.0 0.1 3 20 268 286 266 287 0.78 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF587-201 - 575 8.5e-08 31.7 64.4 6 15 6.3e-05 0.094 12.3 0.1 2 21 295 315 294 315 0.89 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF587-201 - 575 8.5e-08 31.7 64.4 7 15 0.02 29 4.4 0.1 3 13 324 334 322 343 0.76 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF587-201 - 575 8.5e-08 31.7 64.4 8 15 0.042 62 3.3 0.2 3 12 352 361 350 364 0.87 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF587-201 - 575 8.5e-08 31.7 64.4 9 15 0.02 30 4.3 0.1 3 12 380 389 378 398 0.91 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF587-201 - 575 8.5e-08 31.7 64.4 10 15 0.0034 5.1 6.8 0.5 3 21 408 427 406 427 0.84 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF587-201 - 575 8.5e-08 31.7 64.4 11 15 0.08 1.2e+02 2.4 0.2 3 12 436 445 434 450 0.88 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF587-201 - 575 8.5e-08 31.7 64.4 12 15 0.35 5.2e+02 0.3 0.1 3 11 464 472 463 474 0.87 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF587-201 - 575 8.5e-08 31.7 64.4 13 15 0.00052 0.78 9.4 0.1 3 15 492 504 490 511 0.84 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF587-201 - 575 8.5e-08 31.7 64.4 14 15 0.0012 1.8 8.2 0.9 3 14 520 531 518 538 0.88 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF587-201 - 575 8.5e-08 31.7 64.4 15 15 0.0033 5 6.8 0.2 3 20 548 566 546 567 0.79 Ubiquitin-Binding Zinc Finger zinc_ribbon_15 PF17032.5 86 ZNF587-201 - 575 1.8e-07 31.8 49.7 1 8 0.1 1.5e+02 3.2 0.3 36 72 90 126 59 134 0.60 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF587-201 - 575 1.8e-07 31.8 49.7 2 8 0.0043 6.4 7.6 2.5 25 78 227 280 207 283 0.81 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF587-201 - 575 1.8e-07 31.8 49.7 3 8 0.0011 1.6 9.5 1.0 38 77 268 307 260 315 0.89 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF587-201 - 575 1.8e-07 31.8 49.7 4 8 0.001 1.5 9.6 0.9 26 75 284 333 280 339 0.84 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF587-201 - 575 1.8e-07 31.8 49.7 5 8 0.00048 0.71 10.7 0.8 38 79 324 365 312 365 0.87 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF587-201 - 575 1.8e-07 31.8 49.7 6 8 1.5e-05 0.023 15.5 3.9 22 75 364 417 361 451 0.93 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF587-201 - 575 1.8e-07 31.8 49.7 7 8 0.0052 7.8 7.3 3.0 32 75 458 501 437 508 0.82 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF587-201 - 575 1.8e-07 31.8 49.7 8 8 0.0034 5 7.9 3.5 32 78 514 560 506 563 0.86 zinc-ribbon family # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF587-201.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF587-201.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF587-201.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF587-201.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF587-201.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:10:18 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZNF587-202 - 532 9.8e-79 256.6 95.6 1 16 2 3e+03 -1.0 0.3 11 21 45 55 42 55 0.81 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF587-202 - 532 9.8e-79 256.6 95.6 2 16 2.8 4.2e+03 -1.5 0.8 4 13 66 75 63 84 0.79 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF587-202 - 532 9.8e-79 256.6 95.6 3 16 0.11 1.6e+02 3.0 1.2 4 15 94 105 91 106 0.87 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF587-202 - 532 9.8e-79 256.6 95.6 4 16 1.3 1.9e+03 -0.4 0.2 11 26 165 180 158 180 0.81 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF587-202 - 532 9.8e-79 256.6 95.6 5 16 0.0092 14 6.3 0.8 15 25 197 207 181 208 0.81 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF587-202 - 532 9.8e-79 256.6 95.6 6 16 6.2e-07 0.00093 19.5 0.3 2 25 212 235 211 236 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF587-202 - 532 9.8e-79 256.6 95.6 7 16 1.1e-09 1.7e-06 28.2 0.1 2 25 240 263 239 264 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF587-202 - 532 9.8e-79 256.6 95.6 8 16 1.8e-09 2.7e-06 27.6 0.0 2 25 268 291 267 292 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF587-202 - 532 9.8e-79 256.6 95.6 9 16 1.2e-07 0.00017 21.8 0.2 1 25 295 319 295 320 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF587-202 - 532 9.8e-79 256.6 95.6 10 16 3.1e-10 4.7e-07 30.0 0.4 4 25 326 347 324 348 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF587-202 - 532 9.8e-79 256.6 95.6 11 16 6.6e-11 9.9e-08 32.1 1.9 1 25 351 375 351 376 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF587-202 - 532 9.8e-79 256.6 95.6 12 16 9.8e-10 1.5e-06 28.4 1.6 1 25 379 403 379 404 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF587-202 - 532 9.8e-79 256.6 95.6 13 16 8.5e-10 1.3e-06 28.6 0.2 2 26 408 432 407 432 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF587-202 - 532 9.8e-79 256.6 95.6 14 16 5.4e-11 8.1e-08 32.4 0.1 5 25 439 459 435 460 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF587-202 - 532 9.8e-79 256.6 95.6 15 16 9.1e-10 1.4e-06 28.5 1.6 5 25 467 487 463 488 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF587-202 - 532 9.8e-79 256.6 95.6 16 16 3.2e-11 4.8e-08 33.1 1.0 2 24 492 514 491 516 0.94 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZNF587-202 - 532 4.8e-65 212.6 113.7 1 15 0.015 23 5.7 1.5 1 23 49 71 49 72 0.94 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF587-202 - 532 4.8e-65 212.6 113.7 2 15 0.052 78 4.0 0.1 6 23 82 99 80 99 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF587-202 - 532 4.8e-65 212.6 113.7 3 15 1.3 2e+03 -0.4 0.1 6 19 171 187 169 190 0.69 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF587-202 - 532 4.8e-65 212.6 113.7 4 15 4.8e-08 7.2e-05 23.0 1.6 1 23 197 219 197 219 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF587-202 - 532 4.8e-65 212.6 113.7 5 15 2e-09 3e-06 27.4 0.5 1 23 225 247 225 247 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF587-202 - 532 4.8e-65 212.6 113.7 6 15 6e-09 8.9e-06 25.9 0.1 1 23 253 275 253 275 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF587-202 - 532 4.8e-65 212.6 113.7 7 15 5.4e-08 8.1e-05 22.9 0.1 1 23 281 303 281 303 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF587-202 - 532 4.8e-65 212.6 113.7 8 15 1.6e-06 0.0024 18.3 5.4 1 23 309 331 309 331 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF587-202 - 532 4.8e-65 212.6 113.7 9 15 2.8e-09 4.2e-06 26.9 0.6 1 23 337 359 337 359 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF587-202 - 532 4.8e-65 212.6 113.7 10 15 3.4e-09 5.1e-06 26.7 3.5 1 23 365 387 365 387 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF587-202 - 532 4.8e-65 212.6 113.7 11 15 2.9e-07 0.00043 20.6 2.2 1 23 393 415 393 415 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF587-202 - 532 4.8e-65 212.6 113.7 12 15 1.2e-05 0.018 15.5 0.4 1 23 421 443 421 443 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF587-202 - 532 4.8e-65 212.6 113.7 13 15 1.3e-06 0.0019 18.6 1.1 1 23 449 471 449 471 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF587-202 - 532 4.8e-65 212.6 113.7 14 15 1.7e-08 2.6e-05 24.4 3.0 1 23 477 499 477 499 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF587-202 - 532 4.8e-65 212.6 113.7 15 15 2.1e-07 0.00032 21.0 3.8 1 23 505 527 505 527 0.98 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZNF587-202 - 532 4.2e-40 132.9 110.9 1 15 0.0017 2.5 9.2 1.9 1 24 49 72 49 72 0.97 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF587-202 - 532 4.2e-40 132.9 110.9 2 15 0.11 1.6e+02 3.5 0.1 6 23 82 99 80 100 0.91 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF587-202 - 532 4.2e-40 132.9 110.9 3 15 5.1 7.6e+03 -1.7 0.1 7 20 175 188 169 190 0.73 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF587-202 - 532 4.2e-40 132.9 110.9 4 15 2.6e-06 0.0039 17.9 1.1 1 23 197 219 197 220 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF587-202 - 532 4.2e-40 132.9 110.9 5 15 1.5e-05 0.023 15.5 0.4 3 23 227 247 225 248 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF587-202 - 532 4.2e-40 132.9 110.9 6 15 2.1e-06 0.0032 18.2 0.3 1 23 253 275 253 276 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF587-202 - 532 4.2e-40 132.9 110.9 7 15 2e-05 0.03 15.1 0.1 1 23 281 303 281 304 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF587-202 - 532 4.2e-40 132.9 110.9 8 15 0.00072 1.1 10.3 4.6 1 23 309 331 309 332 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF587-202 - 532 4.2e-40 132.9 110.9 9 15 9.3e-06 0.014 16.2 0.5 1 23 337 359 337 360 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF587-202 - 532 4.2e-40 132.9 110.9 10 15 3.9e-05 0.058 14.2 2.7 1 23 365 387 365 388 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF587-202 - 532 4.2e-40 132.9 110.9 11 15 2e-05 0.029 15.2 1.7 1 23 393 415 393 416 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF587-202 - 532 4.2e-40 132.9 110.9 12 15 0.00025 0.37 11.7 0.4 1 23 421 443 421 444 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF587-202 - 532 4.2e-40 132.9 110.9 13 15 2.1e-06 0.0031 18.2 1.8 1 23 449 471 449 472 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF587-202 - 532 4.2e-40 132.9 110.9 14 15 9.4e-07 0.0014 19.3 2.8 1 23 477 499 477 500 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF587-202 - 532 4.2e-40 132.9 110.9 15 15 6.6e-06 0.0099 16.7 3.2 1 23 505 527 505 528 0.95 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF587-202 - 532 2.8e-18 65.4 95.6 1 13 5.9 8.9e+03 -3.1 0.1 1 8 48 55 48 55 0.85 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF587-202 - 532 2.8e-18 65.4 95.6 2 13 0.00042 0.63 10.1 3.1 2 24 197 219 196 222 0.85 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF587-202 - 532 2.8e-18 65.4 95.6 3 13 0.0047 7 6.8 1.0 2 24 225 247 225 250 0.87 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF587-202 - 532 2.8e-18 65.4 95.6 4 13 0.00033 0.49 10.4 0.3 1 18 252 269 252 272 0.78 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF587-202 - 532 2.8e-18 65.4 95.6 5 13 0.00047 0.71 9.9 0.3 2 12 281 291 281 301 0.85 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF587-202 - 532 2.8e-18 65.4 95.6 6 13 0.0071 11 6.2 0.4 1 12 308 319 308 320 0.89 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF587-202 - 532 2.8e-18 65.4 95.6 7 13 0.0024 3.6 7.7 0.4 2 12 337 347 337 359 0.91 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF587-202 - 532 2.8e-18 65.4 95.6 8 13 2.2e-05 0.032 14.2 2.9 2 22 365 385 365 389 0.86 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF587-202 - 532 2.8e-18 65.4 95.6 9 13 0.0029 4.3 7.4 0.5 2 13 393 404 393 415 0.87 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF587-202 - 532 2.8e-18 65.4 95.6 10 13 0.021 31 4.7 0.2 2 11 421 430 421 431 0.90 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF587-202 - 532 2.8e-18 65.4 95.6 11 13 6e-06 0.009 16.0 2.8 2 25 449 472 449 474 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF587-202 - 532 2.8e-18 65.4 95.6 12 13 1.6e-06 0.0023 17.9 3.0 2 24 477 499 477 502 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF587-202 - 532 2.8e-18 65.4 95.6 13 13 0.0005 0.75 9.9 5.6 2 26 505 529 505 530 0.94 C2H2-type zinc finger Zn-ribbon_8 PF09723.10 40 ZNF587-202 - 532 1.6e-08 34.5 76.1 1 13 0.25 3.7e+02 1.4 0.2 8 27 51 70 47 74 0.76 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF587-202 - 532 1.6e-08 34.5 76.1 2 13 6.2e-05 0.093 12.9 3.0 6 38 197 236 196 238 0.75 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF587-202 - 532 1.6e-08 34.5 76.1 3 13 0.007 11 6.3 4.9 6 35 225 261 224 265 0.82 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF587-202 - 532 1.6e-08 34.5 76.1 4 13 0.0069 10 6.3 6.4 6 34 253 288 252 293 0.82 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF587-202 - 532 1.6e-08 34.5 76.1 5 13 0.0062 9.2 6.5 7.0 6 38 281 320 280 322 0.83 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF587-202 - 532 1.6e-08 34.5 76.1 6 13 0.0086 13 6.0 7.9 6 34 309 344 307 346 0.89 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF587-202 - 532 1.6e-08 34.5 76.1 7 13 0.001 1.5 9.0 6.0 6 35 337 373 336 375 0.88 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF587-202 - 532 1.6e-08 34.5 76.1 8 13 7.7e-05 0.12 12.6 4.8 6 38 365 404 364 406 0.89 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF587-202 - 532 1.6e-08 34.5 76.1 9 13 0.0005 0.75 10.0 1.7 6 34 393 428 392 433 0.87 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF587-202 - 532 1.6e-08 34.5 76.1 10 13 0.0019 2.8 8.1 3.4 6 34 421 456 420 459 0.89 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF587-202 - 532 1.6e-08 34.5 76.1 11 13 0.011 17 5.6 0.6 6 15 449 458 448 468 0.89 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF587-202 - 532 1.6e-08 34.5 76.1 12 13 0.00013 0.2 11.8 7.3 6 38 477 516 476 517 0.91 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF587-202 - 532 1.6e-08 34.5 76.1 13 13 0.0011 1.6 8.9 0.4 6 17 505 516 504 529 0.82 Zinc ribbon domain zf_UBZ PF18439.1 32 ZNF587-202 - 532 2.8e-08 33.2 64.4 1 15 4.2 6.3e+03 -3.1 0.0 8 15 24 31 24 35 0.80 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF587-202 - 532 2.8e-08 33.2 64.4 2 15 2.5 3.7e+03 -2.4 0.1 3 9 49 55 48 60 0.82 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF587-202 - 532 2.8e-08 33.2 64.4 3 15 6.6 9.9e+03 -3.7 0.3 23 26 62 65 62 66 0.91 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF587-202 - 532 2.8e-08 33.2 64.4 4 15 0.00036 0.54 9.9 0.3 2 14 196 208 195 216 0.79 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF587-202 - 532 2.8e-08 33.2 64.4 5 15 0.012 17 5.1 0.1 3 20 225 243 223 244 0.78 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF587-202 - 532 2.8e-08 33.2 64.4 6 15 5.8e-05 0.086 12.5 0.1 2 21 252 272 251 272 0.89 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF587-202 - 532 2.8e-08 33.2 64.4 7 15 0.018 27 4.5 0.1 3 13 281 291 279 300 0.76 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF587-202 - 532 2.8e-08 33.2 64.4 8 15 0.038 57 3.4 0.2 3 12 309 318 307 321 0.87 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF587-202 - 532 2.8e-08 33.2 64.4 9 15 0.018 27 4.4 0.1 3 12 337 346 335 355 0.91 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF587-202 - 532 2.8e-08 33.2 64.4 10 15 0.0031 4.6 6.9 0.5 3 21 365 384 363 384 0.84 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF587-202 - 532 2.8e-08 33.2 64.4 11 15 0.074 1.1e+02 2.5 0.2 3 12 393 402 391 407 0.88 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF587-202 - 532 2.8e-08 33.2 64.4 12 15 0.32 4.8e+02 0.5 0.1 3 11 421 429 420 431 0.87 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF587-202 - 532 2.8e-08 33.2 64.4 13 15 0.00048 0.72 9.5 0.1 3 15 449 461 447 468 0.84 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF587-202 - 532 2.8e-08 33.2 64.4 14 15 0.0011 1.7 8.3 0.9 3 14 477 488 475 495 0.88 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF587-202 - 532 2.8e-08 33.2 64.4 15 15 0.0031 4.6 6.9 0.2 3 20 505 523 503 524 0.79 Ubiquitin-Binding Zinc Finger zinc_ribbon_15 PF17032.5 86 ZNF587-202 - 532 9.3e-08 32.7 49.9 1 8 0.089 1.3e+02 3.4 0.3 36 73 47 84 18 92 0.60 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF587-202 - 532 9.3e-08 32.7 49.9 2 8 0.0042 6.2 7.6 2.6 25 78 184 237 164 240 0.81 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF587-202 - 532 9.3e-08 32.7 49.9 3 8 0.0082 12 6.7 4.2 38 77 225 264 197 268 0.85 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF587-202 - 532 9.3e-08 32.7 49.9 4 8 0.00091 1.4 9.8 0.9 26 75 241 290 234 296 0.84 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF587-202 - 532 9.3e-08 32.7 49.9 5 8 0.00045 0.67 10.7 0.9 38 79 281 322 269 322 0.87 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF587-202 - 532 9.3e-08 32.7 49.9 6 8 1.2e-05 0.017 15.8 3.7 22 75 321 374 318 408 0.93 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF587-202 - 532 9.3e-08 32.7 49.9 7 8 0.0046 6.9 7.5 3.0 32 75 415 458 393 465 0.81 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF587-202 - 532 9.3e-08 32.7 49.9 8 8 0.0031 4.6 8.1 3.5 32 78 471 517 463 520 0.86 zinc-ribbon family # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF587-202.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF587-202.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF587-202.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF587-202.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF587-202.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:10:18 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZNF587-203 - 574 3.7e-78 254.7 95.6 1 16 2.2 3.3e+03 -1.2 0.3 11 21 87 97 84 97 0.81 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF587-203 - 574 3.7e-78 254.7 95.6 2 16 3.1 4.6e+03 -1.6 0.8 4 13 108 117 105 126 0.79 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF587-203 - 574 3.7e-78 254.7 95.6 3 16 0.12 1.8e+02 2.8 1.2 4 15 136 147 133 148 0.87 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF587-203 - 574 3.7e-78 254.7 95.6 4 16 1.4 2.1e+03 -0.6 0.2 11 26 207 222 200 222 0.81 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF587-203 - 574 3.7e-78 254.7 95.6 5 16 0.01 15 6.2 0.8 15 25 239 249 223 250 0.81 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF587-203 - 574 3.7e-78 254.7 95.6 6 16 6.8e-07 0.001 19.4 0.3 2 25 254 277 253 278 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF587-203 - 574 3.7e-78 254.7 95.6 7 16 1.3e-09 1.9e-06 28.0 0.1 2 25 282 305 281 306 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF587-203 - 574 3.7e-78 254.7 95.6 8 16 2e-09 2.9e-06 27.4 0.0 2 25 310 333 309 334 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF587-203 - 574 3.7e-78 254.7 95.6 9 16 1.3e-07 0.00019 21.7 0.2 1 25 337 361 337 362 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF587-203 - 574 3.7e-78 254.7 95.6 10 16 3.4e-10 5.1e-07 29.8 0.4 4 25 368 389 366 390 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF587-203 - 574 3.7e-78 254.7 95.6 11 16 7.2e-11 1.1e-07 32.0 1.9 1 25 393 417 393 418 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF587-203 - 574 3.7e-78 254.7 95.6 12 16 1.1e-09 1.6e-06 28.3 1.6 1 25 421 445 421 446 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF587-203 - 574 3.7e-78 254.7 95.6 13 16 9.3e-10 1.4e-06 28.4 0.2 2 26 450 474 449 474 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF587-203 - 574 3.7e-78 254.7 95.6 14 16 5.9e-11 8.9e-08 32.2 0.1 5 25 481 501 477 502 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF587-203 - 574 3.7e-78 254.7 95.6 15 16 1e-09 1.5e-06 28.4 1.6 5 25 509 529 505 530 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF587-203 - 574 3.7e-78 254.7 95.6 16 16 3.5e-11 5.2e-08 33.0 1.0 2 24 534 556 533 558 0.94 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZNF587-203 - 574 1.7e-64 210.8 113.7 1 15 0.017 25 5.6 1.5 1 23 91 113 91 114 0.94 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF587-203 - 574 1.7e-64 210.8 113.7 2 15 0.057 85 3.9 0.1 6 23 124 141 122 141 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF587-203 - 574 1.7e-64 210.8 113.7 3 15 1.5 2.2e+03 -0.5 0.1 6 19 213 229 211 232 0.69 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF587-203 - 574 1.7e-64 210.8 113.7 4 15 5.3e-08 7.9e-05 22.9 1.6 1 23 239 261 239 261 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF587-203 - 574 1.7e-64 210.8 113.7 5 15 2.2e-09 3.3e-06 27.2 0.5 1 23 267 289 267 289 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF587-203 - 574 1.7e-64 210.8 113.7 6 15 6.5e-09 9.7e-06 25.8 0.1 1 23 295 317 295 317 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF587-203 - 574 1.7e-64 210.8 113.7 7 15 5.9e-08 8.8e-05 22.7 0.1 1 23 323 345 323 345 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF587-203 - 574 1.7e-64 210.8 113.7 8 15 1.7e-06 0.0026 18.1 5.4 1 23 351 373 351 373 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF587-203 - 574 1.7e-64 210.8 113.7 9 15 3.1e-09 4.6e-06 26.8 0.6 1 23 379 401 379 401 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF587-203 - 574 1.7e-64 210.8 113.7 10 15 3.7e-09 5.5e-06 26.5 3.5 1 23 407 429 407 429 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF587-203 - 574 1.7e-64 210.8 113.7 11 15 3.1e-07 0.00047 20.5 2.2 1 23 435 457 435 457 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF587-203 - 574 1.7e-64 210.8 113.7 12 15 1.3e-05 0.02 15.3 0.4 1 23 463 485 463 485 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF587-203 - 574 1.7e-64 210.8 113.7 13 15 1.4e-06 0.0021 18.4 1.1 1 23 491 513 491 513 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF587-203 - 574 1.7e-64 210.8 113.7 14 15 1.9e-08 2.8e-05 24.3 3.0 1 23 519 541 519 541 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF587-203 - 574 1.7e-64 210.8 113.7 15 15 2.3e-07 0.00035 20.9 3.8 1 23 547 569 547 569 0.98 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZNF587-203 - 574 1.5e-39 131.2 110.9 1 15 0.0018 2.7 9.1 1.9 1 24 91 114 91 114 0.97 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF587-203 - 574 1.5e-39 131.2 110.9 2 15 0.12 1.8e+02 3.4 0.1 6 23 124 141 122 142 0.91 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF587-203 - 574 1.5e-39 131.2 110.9 3 15 5.5 8.3e+03 -1.8 0.1 7 20 217 230 211 232 0.73 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF587-203 - 574 1.5e-39 131.2 110.9 4 15 2.8e-06 0.0042 17.8 1.1 1 23 239 261 239 262 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF587-203 - 574 1.5e-39 131.2 110.9 5 15 1.7e-05 0.025 15.4 0.4 3 23 269 289 267 290 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF587-203 - 574 1.5e-39 131.2 110.9 6 15 2.3e-06 0.0035 18.1 0.3 1 23 295 317 295 318 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF587-203 - 574 1.5e-39 131.2 110.9 7 15 2.2e-05 0.033 15.0 0.1 1 23 323 345 323 346 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF587-203 - 574 1.5e-39 131.2 110.9 8 15 0.00079 1.2 10.2 4.6 1 23 351 373 351 374 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF587-203 - 574 1.5e-39 131.2 110.9 9 15 1e-05 0.015 16.1 0.5 1 23 379 401 379 402 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF587-203 - 574 1.5e-39 131.2 110.9 10 15 4.3e-05 0.064 14.1 2.7 1 23 407 429 407 430 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF587-203 - 574 1.5e-39 131.2 110.9 11 15 2.1e-05 0.032 15.1 1.7 1 23 435 457 435 458 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF587-203 - 574 1.5e-39 131.2 110.9 12 15 0.00027 0.41 11.6 0.4 1 23 463 485 463 486 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF587-203 - 574 1.5e-39 131.2 110.9 13 15 2.3e-06 0.0034 18.1 1.8 1 23 491 513 491 514 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF587-203 - 574 1.5e-39 131.2 110.9 14 15 1e-06 0.0015 19.2 2.8 1 23 519 541 519 542 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF587-203 - 574 1.5e-39 131.2 110.9 15 15 7.2e-06 0.011 16.5 3.2 1 23 547 569 547 570 0.95 C2H2-type zinc finger KRAB PF01352.27 42 ZNF587-203 - 574 9.2e-23 79.6 0.2 1 1 1.2e-25 1.8e-22 78.7 0.2 2 42 14 54 13 54 0.98 KRAB box zf-C2H2_6 PF13912.6 27 ZNF587-203 - 574 8.4e-18 63.9 95.6 1 13 6.4 9.6e+03 -3.2 0.1 1 8 90 97 90 97 0.85 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF587-203 - 574 8.4e-18 63.9 95.6 2 13 0.00046 0.68 10.0 3.1 2 24 239 261 238 264 0.85 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF587-203 - 574 8.4e-18 63.9 95.6 3 13 0.0051 7.6 6.7 1.0 2 24 267 289 267 292 0.87 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF587-203 - 574 8.4e-18 63.9 95.6 4 13 0.00036 0.54 10.3 0.3 1 18 294 311 294 314 0.78 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF587-203 - 574 8.4e-18 63.9 95.6 5 13 0.00052 0.77 9.8 0.3 2 12 323 333 323 343 0.85 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF587-203 - 574 8.4e-18 63.9 95.6 6 13 0.0078 12 6.1 0.4 1 12 350 361 350 362 0.89 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF587-203 - 574 8.4e-18 63.9 95.6 7 13 0.0026 3.9 7.6 0.4 2 12 379 389 379 401 0.91 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF587-203 - 574 8.4e-18 63.9 95.6 8 13 2.4e-05 0.035 14.1 2.9 2 22 407 427 407 431 0.86 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF587-203 - 574 8.4e-18 63.9 95.6 9 13 0.0032 4.7 7.3 0.5 2 13 435 446 435 457 0.87 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF587-203 - 574 8.4e-18 63.9 95.6 10 13 0.022 33 4.6 0.2 2 11 463 472 463 473 0.90 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF587-203 - 574 8.4e-18 63.9 95.6 11 13 6.6e-06 0.0098 15.9 2.8 2 25 491 514 491 516 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF587-203 - 574 8.4e-18 63.9 95.6 12 13 1.7e-06 0.0025 17.7 3.0 2 24 519 541 519 544 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF587-203 - 574 8.4e-18 63.9 95.6 13 13 0.00055 0.82 9.7 5.6 2 26 547 571 547 572 0.94 C2H2-type zinc finger Zn-ribbon_8 PF09723.10 40 ZNF587-203 - 574 5e-08 32.9 76.5 1 13 0.27 4e+02 1.2 0.2 8 27 93 112 89 116 0.76 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF587-203 - 574 5e-08 32.9 76.5 2 13 6.8e-05 0.1 12.7 3.0 6 38 239 278 238 280 0.75 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF587-203 - 574 5e-08 32.9 76.5 3 13 0.0063 9.5 6.4 4.7 6 35 267 303 266 308 0.82 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF587-203 - 574 5e-08 32.9 76.5 4 13 0.015 23 5.2 6.5 6 34 295 330 293 330 0.82 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF587-203 - 574 5e-08 32.9 76.5 5 13 0.0069 10 6.3 7.0 6 38 323 362 322 364 0.83 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF587-203 - 574 5e-08 32.9 76.5 6 13 0.0082 12 6.1 7.8 6 34 351 386 350 390 0.89 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF587-203 - 574 5e-08 32.9 76.5 7 13 0.0012 1.7 8.8 6.1 6 35 379 415 378 417 0.88 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF587-203 - 574 5e-08 32.9 76.5 8 13 7.5e-05 0.11 12.6 4.6 6 38 407 446 406 448 0.89 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF587-203 - 574 5e-08 32.9 76.5 9 13 0.00069 1 9.5 1.9 6 34 435 470 434 472 0.86 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF587-203 - 574 5e-08 32.9 76.5 10 13 0.0018 2.8 8.2 3.3 6 34 463 498 462 504 0.89 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF587-203 - 574 5e-08 32.9 76.5 11 13 0.013 19 5.5 0.7 6 15 491 500 490 509 0.89 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF587-203 - 574 5e-08 32.9 76.5 12 13 0.00015 0.22 11.7 7.4 6 38 519 558 518 559 0.91 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF587-203 - 574 5e-08 32.9 76.5 13 13 0.0012 1.8 8.7 0.4 6 17 547 558 546 570 0.83 Zinc ribbon domain zf_UBZ PF18439.1 32 ZNF587-203 - 574 8.3e-08 31.7 64.4 1 15 4.6 6.9e+03 -3.2 0.0 8 15 66 73 66 77 0.80 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF587-203 - 574 8.3e-08 31.7 64.4 2 15 2.7 4e+03 -2.5 0.1 3 9 91 97 90 102 0.82 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF587-203 - 574 8.3e-08 31.7 64.4 3 15 7.2 1.1e+04 -3.9 0.3 23 26 104 107 104 108 0.91 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF587-203 - 574 8.3e-08 31.7 64.4 4 15 0.0004 0.59 9.8 0.3 2 14 238 250 237 258 0.79 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF587-203 - 574 8.3e-08 31.7 64.4 5 15 0.013 19 5.0 0.1 3 20 267 285 265 286 0.78 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF587-203 - 574 8.3e-08 31.7 64.4 6 15 6.3e-05 0.094 12.3 0.1 2 21 294 314 293 314 0.89 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF587-203 - 574 8.3e-08 31.7 64.4 7 15 0.019 29 4.4 0.1 3 13 323 333 321 342 0.76 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF587-203 - 574 8.3e-08 31.7 64.4 8 15 0.042 62 3.3 0.2 3 12 351 360 349 363 0.87 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF587-203 - 574 8.3e-08 31.7 64.4 9 15 0.02 30 4.3 0.1 3 12 379 388 377 397 0.91 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF587-203 - 574 8.3e-08 31.7 64.4 10 15 0.0034 5.1 6.8 0.5 3 21 407 426 405 426 0.84 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF587-203 - 574 8.3e-08 31.7 64.4 11 15 0.08 1.2e+02 2.4 0.2 3 12 435 444 433 449 0.88 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF587-203 - 574 8.3e-08 31.7 64.4 12 15 0.35 5.2e+02 0.4 0.1 3 11 463 471 462 473 0.87 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF587-203 - 574 8.3e-08 31.7 64.4 13 15 0.00052 0.78 9.4 0.1 3 15 491 503 489 510 0.84 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF587-203 - 574 8.3e-08 31.7 64.4 14 15 0.0012 1.8 8.2 0.9 3 14 519 530 517 537 0.88 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF587-203 - 574 8.3e-08 31.7 64.4 15 15 0.0033 5 6.8 0.2 3 20 547 565 545 566 0.79 Ubiquitin-Binding Zinc Finger zinc_ribbon_15 PF17032.5 86 ZNF587-203 - 574 1.7e-07 31.9 49.7 1 8 0.1 1.5e+02 3.2 0.3 36 72 89 125 58 133 0.60 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF587-203 - 574 1.7e-07 31.9 49.7 2 8 0.0043 6.4 7.6 2.5 25 78 226 279 206 282 0.81 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF587-203 - 574 1.7e-07 31.9 49.7 3 8 0.0011 1.6 9.5 1.0 38 77 267 306 259 314 0.89 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF587-203 - 574 1.7e-07 31.9 49.7 4 8 0.001 1.5 9.6 0.9 26 75 283 332 279 338 0.84 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF587-203 - 574 1.7e-07 31.9 49.7 5 8 0.00047 0.71 10.7 0.8 38 79 323 364 311 364 0.87 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF587-203 - 574 1.7e-07 31.9 49.7 6 8 1.5e-05 0.023 15.5 3.9 22 75 363 416 360 450 0.93 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF587-203 - 574 1.7e-07 31.9 49.7 7 8 0.0052 7.7 7.3 3.0 32 75 457 500 436 507 0.82 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF587-203 - 574 1.7e-07 31.9 49.7 8 8 0.0034 5 7.9 3.5 32 78 513 559 505 562 0.86 zinc-ribbon family # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF587-203.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF587-203.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF587-203.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF587-203.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF587-203.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:10:19 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF587-204.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF587-204.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF587-204.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF587-204.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF587-204.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:10:19 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF587-205.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF587-205.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF587-205.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF587-205.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF587-205.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:10:19 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZNF589-201 - 364 5.7e-24 83.4 23.4 1 6 0.0042 4 8.0 0.1 13 25 78 92 74 93 0.79 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF589-201 - 364 5.7e-24 83.4 23.4 2 6 1.4 1.3e+03 0.1 0.0 17 25 250 258 242 259 0.87 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF589-201 - 364 5.7e-24 83.4 23.4 3 6 3.1e-08 2.9e-05 24.3 0.1 5 24 266 285 263 286 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF589-201 - 364 5.7e-24 83.4 23.4 4 6 1.6e-08 1.5e-05 25.2 1.6 2 25 291 314 290 315 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF589-201 - 364 5.7e-24 83.4 23.4 5 6 5.3e-07 0.0005 20.4 0.7 2 24 319 341 318 342 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF589-201 - 364 5.7e-24 83.4 23.4 6 6 5e-06 0.0047 17.3 0.1 2 17 347 362 346 364 0.92 Zinc-finger double domain KRAB PF01352.27 42 ZNF589-201 - 364 4.9e-22 77.3 0.4 1 2 2e-24 1.9e-21 75.4 0.3 1 42 34 75 34 75 0.99 KRAB box KRAB PF01352.27 42 ZNF589-201 - 364 4.9e-22 77.3 0.4 2 2 2.4 2.3e+03 -1.7 0.0 2 13 215 226 214 227 0.87 KRAB box zf-C2H2 PF00096.26 23 ZNF589-201 - 364 1.4e-21 75.7 27.5 1 6 0.1 96 3.7 0.1 1 14 82 95 82 105 0.85 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF589-201 - 364 1.4e-21 75.7 27.5 2 6 0.35 3.3e+02 2.0 0.0 5 18 219 232 218 232 0.87 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF589-201 - 364 1.4e-21 75.7 27.5 3 6 1e-08 9.8e-06 25.8 0.5 2 23 249 270 248 270 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF589-201 - 364 1.4e-21 75.7 27.5 4 6 3.9e-06 0.0037 17.6 0.0 1 23 276 298 276 298 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF589-201 - 364 1.4e-21 75.7 27.5 5 6 1.2e-05 0.012 16.1 4.8 1 23 304 326 304 326 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF589-201 - 364 1.4e-21 75.7 27.5 6 6 4.2e-08 4e-05 23.8 0.4 1 23 332 354 332 354 0.98 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZNF589-201 - 364 1.3e-16 59.9 25.9 1 5 0.065 61 4.8 0.3 1 16 82 97 82 105 0.59 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF589-201 - 364 1.3e-16 59.9 25.9 2 5 8.9e-06 0.0084 16.9 0.4 3 23 250 270 249 271 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF589-201 - 364 1.3e-16 59.9 25.9 3 5 0.00012 0.11 13.3 0.1 1 23 276 298 276 299 0.91 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF589-201 - 364 1.3e-16 59.9 25.9 4 5 9e-07 0.00085 20.0 3.7 1 23 304 326 304 327 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF589-201 - 364 1.3e-16 59.9 25.9 5 5 2.4e-06 0.0022 18.7 0.3 1 23 332 354 332 355 0.95 C2H2-type zinc finger zf-C2H2_jaz PF12171.8 27 ZNF589-201 - 364 1.1e-08 35.1 6.0 1 5 0.6 5.7e+02 1.0 0.0 2 17 82 97 81 105 0.80 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF589-201 - 364 1.1e-08 35.1 6.0 2 5 0.009 8.5 6.8 0.1 4 24 250 270 249 270 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF589-201 - 364 1.1e-08 35.1 6.0 3 5 7.8e-05 0.073 13.4 0.0 2 24 276 298 275 299 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF589-201 - 364 1.1e-08 35.1 6.0 4 5 0.26 2.5e+02 2.1 0.4 2 12 304 314 303 315 0.88 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF589-201 - 364 1.1e-08 35.1 6.0 5 5 0.00097 0.91 9.9 0.0 2 22 332 352 331 352 0.93 Zinc-finger double-stranded RNA-binding # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF589-201.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF589-201.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF589-201.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF589-201.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF589-201.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:10:20 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- KRAB PF01352.27 42 ZNF589-202 - 80 8.6e-23 79.7 0.3 1 1 6.2e-27 1.1e-22 79.4 0.3 1 42 34 75 34 75 0.99 KRAB box # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF589-202.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF589-202.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF589-202.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF589-202.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF589-202.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:10:20 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- KRAB PF01352.27 42 ZNF589-203 - 96 1.3e-22 79.1 0.3 1 1 9.8e-27 1.8e-22 78.7 0.3 1 42 34 75 34 75 0.99 KRAB box # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF589-203.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF589-203.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF589-203.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF589-203.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF589-203.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:10:20 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- KRAB PF01352.27 42 ZNF589-204 - 177 4e-22 77.6 0.3 1 1 3.4e-26 6.1e-22 77.0 0.3 1 42 34 75 34 75 0.99 KRAB box # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF589-204.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF589-204.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF589-204.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF589-204.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF589-204.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:10:21 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZNF589-205 - 364 5.7e-24 83.4 23.4 1 6 0.0042 4 8.0 0.1 13 25 78 92 74 93 0.79 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF589-205 - 364 5.7e-24 83.4 23.4 2 6 1.4 1.3e+03 0.1 0.0 17 25 250 258 242 259 0.87 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF589-205 - 364 5.7e-24 83.4 23.4 3 6 3.1e-08 2.9e-05 24.3 0.1 5 24 266 285 263 286 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF589-205 - 364 5.7e-24 83.4 23.4 4 6 1.6e-08 1.5e-05 25.2 1.6 2 25 291 314 290 315 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF589-205 - 364 5.7e-24 83.4 23.4 5 6 5.3e-07 0.0005 20.4 0.7 2 24 319 341 318 342 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF589-205 - 364 5.7e-24 83.4 23.4 6 6 5e-06 0.0047 17.3 0.1 2 17 347 362 346 364 0.92 Zinc-finger double domain KRAB PF01352.27 42 ZNF589-205 - 364 4.9e-22 77.3 0.4 1 2 2e-24 1.9e-21 75.4 0.3 1 42 34 75 34 75 0.99 KRAB box KRAB PF01352.27 42 ZNF589-205 - 364 4.9e-22 77.3 0.4 2 2 2.4 2.3e+03 -1.7 0.0 2 13 215 226 214 227 0.87 KRAB box zf-C2H2 PF00096.26 23 ZNF589-205 - 364 1.4e-21 75.7 27.5 1 6 0.1 96 3.7 0.1 1 14 82 95 82 105 0.85 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF589-205 - 364 1.4e-21 75.7 27.5 2 6 0.35 3.3e+02 2.0 0.0 5 18 219 232 218 232 0.87 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF589-205 - 364 1.4e-21 75.7 27.5 3 6 1e-08 9.8e-06 25.8 0.5 2 23 249 270 248 270 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF589-205 - 364 1.4e-21 75.7 27.5 4 6 3.9e-06 0.0037 17.6 0.0 1 23 276 298 276 298 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF589-205 - 364 1.4e-21 75.7 27.5 5 6 1.2e-05 0.012 16.1 4.8 1 23 304 326 304 326 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF589-205 - 364 1.4e-21 75.7 27.5 6 6 4.2e-08 4e-05 23.8 0.4 1 23 332 354 332 354 0.98 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZNF589-205 - 364 1.3e-16 59.9 25.9 1 5 0.065 61 4.8 0.3 1 16 82 97 82 105 0.59 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF589-205 - 364 1.3e-16 59.9 25.9 2 5 8.9e-06 0.0084 16.9 0.4 3 23 250 270 249 271 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF589-205 - 364 1.3e-16 59.9 25.9 3 5 0.00012 0.11 13.3 0.1 1 23 276 298 276 299 0.91 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF589-205 - 364 1.3e-16 59.9 25.9 4 5 9e-07 0.00085 20.0 3.7 1 23 304 326 304 327 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF589-205 - 364 1.3e-16 59.9 25.9 5 5 2.4e-06 0.0022 18.7 0.3 1 23 332 354 332 355 0.95 C2H2-type zinc finger zf-C2H2_jaz PF12171.8 27 ZNF589-205 - 364 1.1e-08 35.1 6.0 1 5 0.6 5.7e+02 1.0 0.0 2 17 82 97 81 105 0.80 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF589-205 - 364 1.1e-08 35.1 6.0 2 5 0.009 8.5 6.8 0.1 4 24 250 270 249 270 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF589-205 - 364 1.1e-08 35.1 6.0 3 5 7.8e-05 0.073 13.4 0.0 2 24 276 298 275 299 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF589-205 - 364 1.1e-08 35.1 6.0 4 5 0.26 2.5e+02 2.1 0.4 2 12 304 314 303 315 0.88 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF589-205 - 364 1.1e-08 35.1 6.0 5 5 0.00097 0.91 9.9 0.0 2 22 332 352 331 352 0.93 Zinc-finger double-stranded RNA-binding # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF589-205.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF589-205.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF589-205.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF589-205.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF589-205.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:10:21 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF589-206.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF589-206.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF589-206.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF589-206.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF589-206.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:10:22 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZNF589-207 - 361 4e-24 83.9 23.5 1 6 0.0032 3.2 8.3 0.1 11 25 73 89 71 90 0.84 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF589-207 - 361 4e-24 83.9 23.5 2 6 1.3 1.3e+03 0.1 0.0 17 25 247 255 239 256 0.87 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF589-207 - 361 4e-24 83.9 23.5 3 6 2.9e-08 2.9e-05 24.3 0.1 5 24 263 282 260 283 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF589-207 - 361 4e-24 83.9 23.5 4 6 1.5e-08 1.5e-05 25.2 1.6 2 25 288 311 287 312 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF589-207 - 361 4e-24 83.9 23.5 5 6 4.9e-07 0.00049 20.4 0.7 2 24 316 338 315 339 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF589-207 - 361 4e-24 83.9 23.5 6 6 4.7e-06 0.0047 17.3 0.1 2 17 344 359 343 361 0.92 Zinc-finger double domain KRAB PF01352.27 42 ZNF589-207 - 361 4.9e-22 77.3 0.4 1 2 1.9e-24 1.8e-21 75.5 0.3 1 42 32 73 32 73 0.99 KRAB box KRAB PF01352.27 42 ZNF589-207 - 361 4.9e-22 77.3 0.4 2 2 2.3 2.3e+03 -1.7 0.0 2 13 212 223 211 224 0.87 KRAB box zf-C2H2 PF00096.26 23 ZNF589-207 - 361 1e-21 76.1 27.5 1 6 0.096 95 3.7 0.1 1 14 79 92 79 102 0.85 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF589-207 - 361 1e-21 76.1 27.5 2 6 0.33 3.3e+02 2.1 0.0 5 18 216 229 215 229 0.87 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF589-207 - 361 1e-21 76.1 27.5 3 6 9.7e-09 9.7e-06 25.8 0.5 2 23 246 267 245 267 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF589-207 - 361 1e-21 76.1 27.5 4 6 3.7e-06 0.0037 17.6 0.0 1 23 273 295 273 295 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF589-207 - 361 1e-21 76.1 27.5 5 6 1.2e-05 0.012 16.1 4.8 1 23 301 323 301 323 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF589-207 - 361 1e-21 76.1 27.5 6 6 4e-08 3.9e-05 23.8 0.4 1 23 329 351 329 351 0.98 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZNF589-207 - 361 1.5e-16 59.7 26.4 1 5 0.066 66 4.8 0.4 1 16 79 94 79 102 0.59 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF589-207 - 361 1.5e-16 59.7 26.4 2 5 8.4e-06 0.0083 16.9 0.4 3 23 247 267 246 268 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF589-207 - 361 1.5e-16 59.7 26.4 3 5 0.00011 0.11 13.4 0.1 1 23 273 295 273 296 0.91 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF589-207 - 361 1.5e-16 59.7 26.4 4 5 8.4e-07 0.00084 20.0 3.7 1 23 301 323 301 324 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF589-207 - 361 1.5e-16 59.7 26.4 5 5 2.2e-06 0.0022 18.7 0.3 1 23 329 351 329 352 0.95 C2H2-type zinc finger zf-C2H2_jaz PF12171.8 27 ZNF589-207 - 361 9.6e-09 35.3 6.0 1 5 0.56 5.6e+02 1.0 0.0 2 17 79 94 78 102 0.80 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF589-207 - 361 9.6e-09 35.3 6.0 2 5 0.0084 8.4 6.8 0.1 4 24 247 267 246 267 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF589-207 - 361 9.6e-09 35.3 6.0 3 5 7.3e-05 0.073 13.4 0.0 2 24 273 295 272 296 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF589-207 - 361 9.6e-09 35.3 6.0 4 5 0.25 2.5e+02 2.1 0.4 2 12 301 311 300 312 0.88 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF589-207 - 361 9.6e-09 35.3 6.0 5 5 0.00091 0.9 9.9 0.0 2 22 329 349 328 349 0.93 Zinc-finger double-stranded RNA-binding # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF589-207.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF589-207.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF589-207.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF589-207.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF589-207.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:10:22 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-C2H2_11 PF16622.5 29 ZNF592-201 - 1267 8.5e-16 57.4 3.8 1 9 0.00024 1.1 9.1 1.2 6 23 588 605 584 612 0.89 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF592-201 - 1267 8.5e-16 57.4 3.8 2 9 4 1.8e+04 -4.6 1.5 16 24 628 636 617 637 0.61 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF592-201 - 1267 8.5e-16 57.4 3.8 3 9 0.25 1.1e+03 -0.6 0.2 4 10 710 716 709 718 0.89 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF592-201 - 1267 8.5e-16 57.4 3.8 4 9 2.4 1.1e+04 -3.7 0.7 7 12 770 775 766 776 0.83 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF592-201 - 1267 8.5e-16 57.4 3.8 5 9 3.1 1.4e+04 -4.0 7.5 5 14 799 808 798 828 0.52 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF592-201 - 1267 8.5e-16 57.4 3.8 6 9 0.66 3e+03 -1.9 0.0 5 24 892 911 891 915 0.78 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF592-201 - 1267 8.5e-16 57.4 3.8 7 9 0.0031 14 5.6 0.5 7 25 1015 1033 1013 1036 0.91 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF592-201 - 1267 8.5e-16 57.4 3.8 8 9 0.63 2.8e+03 -1.8 0.2 5 10 1124 1129 1121 1132 0.84 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF592-201 - 1267 8.5e-16 57.4 3.8 9 9 1.9e-19 8.5e-16 57.4 3.8 1 29 1149 1177 1149 1177 0.99 zinc-finger C2H2-type zf-C2H2_4 PF13894.6 24 ZNF592-201 - 1267 4.7e-07 30.1 99.5 1 14 0.0043 19 6.4 0.5 1 20 587 606 587 609 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF592-201 - 1267 4.7e-07 30.1 99.5 2 14 0.012 52 5.1 2.4 3 23 617 639 615 640 0.80 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF592-201 - 1267 4.7e-07 30.1 99.5 3 14 0.21 9.2e+02 1.2 0.3 2 21 712 731 711 733 0.89 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF592-201 - 1267 4.7e-07 30.1 99.5 4 14 0.041 1.9e+02 3.4 2.1 2 23 741 762 740 763 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF592-201 - 1267 4.7e-07 30.1 99.5 5 14 0.022 1e+02 4.2 2.5 1 21 768 787 768 788 0.70 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF592-201 - 1267 4.7e-07 30.1 99.5 6 14 0.0046 20 6.3 1.2 1 24 799 822 799 822 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF592-201 - 1267 4.7e-07 30.1 99.5 7 14 0.014 61 4.9 0.9 1 24 827 850 827 850 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF592-201 - 1267 4.7e-07 30.1 99.5 8 14 0.19 8.4e+02 1.3 1.8 1 20 862 880 862 882 0.84 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF592-201 - 1267 4.7e-07 30.1 99.5 9 14 0.00011 0.49 11.4 0.2 1 24 892 915 892 915 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF592-201 - 1267 4.7e-07 30.1 99.5 10 14 0.00014 0.64 11.0 0.4 2 24 984 1006 983 1006 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF592-201 - 1267 4.7e-07 30.1 99.5 11 14 6.5e-07 0.0029 18.3 1.7 1 24 1013 1036 1013 1036 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF592-201 - 1267 4.7e-07 30.1 99.5 12 14 0.0075 34 5.7 0.1 1 24 1043 1069 1043 1069 0.88 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF592-201 - 1267 4.7e-07 30.1 99.5 13 14 0.032 1.4e+02 3.7 0.3 1 23 1124 1146 1124 1147 0.85 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF592-201 - 1267 4.7e-07 30.1 99.5 14 14 0.00018 0.8 10.7 1.0 2 24 1154 1176 1153 1176 0.95 C2H2-type zinc finger # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF592-201.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF592-201.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF592-201.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF592-201.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF592-201.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:10:22 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF592-202.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF592-202.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF592-202.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF592-202.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF592-202.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:10:23 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-C2H2_11 PF16622.5 29 ZNF592-203 - 1267 8.5e-16 57.4 3.8 1 9 0.00024 1.1 9.1 1.2 6 23 588 605 584 612 0.89 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF592-203 - 1267 8.5e-16 57.4 3.8 2 9 4 1.8e+04 -4.6 1.5 16 24 628 636 617 637 0.61 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF592-203 - 1267 8.5e-16 57.4 3.8 3 9 0.25 1.1e+03 -0.6 0.2 4 10 710 716 709 718 0.89 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF592-203 - 1267 8.5e-16 57.4 3.8 4 9 2.4 1.1e+04 -3.7 0.7 7 12 770 775 766 776 0.83 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF592-203 - 1267 8.5e-16 57.4 3.8 5 9 3.1 1.4e+04 -4.0 7.5 5 14 799 808 798 828 0.52 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF592-203 - 1267 8.5e-16 57.4 3.8 6 9 0.66 3e+03 -1.9 0.0 5 24 892 911 891 915 0.78 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF592-203 - 1267 8.5e-16 57.4 3.8 7 9 0.0031 14 5.6 0.5 7 25 1015 1033 1013 1036 0.91 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF592-203 - 1267 8.5e-16 57.4 3.8 8 9 0.63 2.8e+03 -1.8 0.2 5 10 1124 1129 1121 1132 0.84 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF592-203 - 1267 8.5e-16 57.4 3.8 9 9 1.9e-19 8.5e-16 57.4 3.8 1 29 1149 1177 1149 1177 0.99 zinc-finger C2H2-type zf-C2H2_4 PF13894.6 24 ZNF592-203 - 1267 4.7e-07 30.1 99.5 1 14 0.0043 19 6.4 0.5 1 20 587 606 587 609 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF592-203 - 1267 4.7e-07 30.1 99.5 2 14 0.012 52 5.1 2.4 3 23 617 639 615 640 0.80 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF592-203 - 1267 4.7e-07 30.1 99.5 3 14 0.21 9.2e+02 1.2 0.3 2 21 712 731 711 733 0.89 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF592-203 - 1267 4.7e-07 30.1 99.5 4 14 0.041 1.9e+02 3.4 2.1 2 23 741 762 740 763 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF592-203 - 1267 4.7e-07 30.1 99.5 5 14 0.022 1e+02 4.2 2.5 1 21 768 787 768 788 0.70 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF592-203 - 1267 4.7e-07 30.1 99.5 6 14 0.0046 20 6.3 1.2 1 24 799 822 799 822 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF592-203 - 1267 4.7e-07 30.1 99.5 7 14 0.014 61 4.9 0.9 1 24 827 850 827 850 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF592-203 - 1267 4.7e-07 30.1 99.5 8 14 0.19 8.4e+02 1.3 1.8 1 20 862 880 862 882 0.84 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF592-203 - 1267 4.7e-07 30.1 99.5 9 14 0.00011 0.49 11.4 0.2 1 24 892 915 892 915 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF592-203 - 1267 4.7e-07 30.1 99.5 10 14 0.00014 0.64 11.0 0.4 2 24 984 1006 983 1006 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF592-203 - 1267 4.7e-07 30.1 99.5 11 14 6.5e-07 0.0029 18.3 1.7 1 24 1013 1036 1013 1036 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF592-203 - 1267 4.7e-07 30.1 99.5 12 14 0.0075 34 5.7 0.1 1 24 1043 1069 1043 1069 0.88 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF592-203 - 1267 4.7e-07 30.1 99.5 13 14 0.032 1.4e+02 3.7 0.3 1 23 1124 1146 1124 1147 0.85 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF592-203 - 1267 4.7e-07 30.1 99.5 14 14 0.00018 0.8 10.7 1.0 2 24 1154 1176 1153 1176 0.95 C2H2-type zinc finger # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF592-203.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF592-203.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF592-203.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF592-203.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF592-203.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:10:23 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF592-204.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF592-204.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF592-204.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF592-204.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF592-204.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:10:24 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZNF594-201 - 807 2.2e-134 432.5 158.9 1 25 6.5e-07 0.00078 19.8 1.0 1 25 113 137 113 138 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF594-201 - 807 2.2e-134 432.5 158.9 2 25 1.2e-07 0.00015 22.1 0.1 2 23 142 163 141 166 0.87 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF594-201 - 807 2.2e-134 432.5 158.9 3 25 5.8e-08 6.9e-05 23.1 0.4 2 25 170 193 169 194 0.90 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF594-201 - 807 2.2e-134 432.5 158.9 4 25 4.2e-10 5e-07 29.9 0.3 1 25 197 221 197 221 0.98 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF594-201 - 807 2.2e-134 432.5 158.9 5 25 1.9e-07 0.00023 21.4 0.2 1 25 225 249 225 250 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF594-201 - 807 2.2e-134 432.5 158.9 6 25 2.7e-08 3.2e-05 24.1 0.2 5 25 257 277 253 278 0.90 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF594-201 - 807 2.2e-134 432.5 158.9 7 25 4.6e-09 5.5e-06 26.6 1.1 3 25 283 305 281 306 0.89 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF594-201 - 807 2.2e-134 432.5 158.9 8 25 1e-08 1.2e-05 25.5 3.8 1 25 309 333 309 333 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF594-201 - 807 2.2e-134 432.5 158.9 9 25 0.024 28 5.4 0.2 3 24 339 357 337 359 0.77 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF594-201 - 807 2.2e-134 432.5 158.9 10 25 0.19 2.3e+02 2.5 0.1 7 24 368 385 367 385 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF594-201 - 807 2.2e-134 432.5 158.9 11 25 2.3e-11 2.7e-08 33.9 0.4 2 25 391 414 390 415 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF594-201 - 807 2.2e-134 432.5 158.9 12 25 7.6e-07 0.0009 19.6 2.8 2 24 419 441 418 442 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF594-201 - 807 2.2e-134 432.5 158.9 13 25 3e-12 3.6e-09 36.6 0.6 1 25 446 470 446 471 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF594-201 - 807 2.2e-134 432.5 158.9 14 25 3.4e-11 4.1e-08 33.3 1.5 1 25 474 498 474 499 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF594-201 - 807 2.2e-134 432.5 158.9 15 25 3.3e-09 3.9e-06 27.0 0.3 3 24 504 525 503 526 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF594-201 - 807 2.2e-134 432.5 158.9 16 25 0.0069 8.3 7.0 0.1 3 18 532 546 530 551 0.82 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF594-201 - 807 2.2e-134 432.5 158.9 17 25 1.5 1.8e+03 -0.4 0.1 9 24 562 577 559 577 0.76 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF594-201 - 807 2.2e-134 432.5 158.9 18 25 4e-10 4.8e-07 29.9 0.7 2 25 583 606 582 607 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF594-201 - 807 2.2e-134 432.5 158.9 19 25 5.1e-09 6.1e-06 26.4 1.4 2 24 611 633 610 634 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF594-201 - 807 2.2e-134 432.5 158.9 20 25 1.6e-11 1.9e-08 34.3 0.6 2 25 639 662 638 663 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF594-201 - 807 2.2e-134 432.5 158.9 21 25 4.3e-10 5.2e-07 29.8 0.8 1 25 666 690 666 691 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF594-201 - 807 2.2e-134 432.5 158.9 22 25 7.1e-09 8.5e-06 26.0 0.7 3 24 696 717 695 717 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF594-201 - 807 2.2e-134 432.5 158.9 23 25 0.06 71 4.1 0.2 3 24 724 742 722 744 0.75 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF594-201 - 807 2.2e-134 432.5 158.9 24 25 0.14 1.7e+02 2.9 0.4 7 24 753 770 752 770 0.89 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF594-201 - 807 2.2e-134 432.5 158.9 25 25 2.8e-08 3.4e-05 24.1 1.1 2 23 776 797 775 797 0.94 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZNF594-201 - 807 6.7e-107 344.4 177.3 1 26 0.0049 5.8 7.6 0.1 7 23 105 121 105 121 0.92 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF594-201 - 807 6.7e-107 344.4 177.3 2 26 3.3e-09 3.9e-06 27.0 0.6 1 23 127 149 127 149 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF594-201 - 807 6.7e-107 344.4 177.3 3 26 1.4e-07 0.00017 21.8 0.1 1 23 155 177 155 177 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF594-201 - 807 6.7e-107 344.4 177.3 4 26 1.5e-08 1.7e-05 25.0 1.2 1 23 183 205 183 205 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF594-201 - 807 6.7e-107 344.4 177.3 5 26 6.6e-09 7.9e-06 26.1 0.2 1 23 211 233 211 233 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF594-201 - 807 6.7e-107 344.4 177.3 6 26 3.9e-07 0.00047 20.5 1.0 1 23 239 261 239 261 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF594-201 - 807 6.7e-107 344.4 177.3 7 26 5.5e-07 0.00066 20.0 1.1 1 23 267 289 267 289 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF594-201 - 807 6.7e-107 344.4 177.3 8 26 5.5e-07 0.00065 20.0 4.0 2 23 296 317 295 317 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF594-201 - 807 6.7e-107 344.4 177.3 9 26 1.3e-06 0.0016 18.8 3.0 1 23 323 345 323 345 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF594-201 - 807 6.7e-107 344.4 177.3 10 26 1.1 1.3e+03 0.1 0.0 5 17 352 364 351 365 0.81 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF594-201 - 807 6.7e-107 344.4 177.3 11 26 3.8e-05 0.045 14.2 0.2 3 23 378 398 376 398 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF594-201 - 807 6.7e-107 344.4 177.3 12 26 6.2e-09 7.4e-06 26.1 2.1 1 23 404 426 404 426 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF594-201 - 807 6.7e-107 344.4 177.3 13 26 3.4e-07 0.0004 20.7 4.0 2 23 433 454 432 454 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF594-201 - 807 6.7e-107 344.4 177.3 14 26 6.1e-09 7.2e-06 26.2 1.3 1 23 460 482 460 482 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF594-201 - 807 6.7e-107 344.4 177.3 15 26 3.3e-09 3.9e-06 27.0 0.8 1 23 488 510 488 510 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF594-201 - 807 6.7e-107 344.4 177.3 16 26 0.0011 1.4 9.5 0.4 1 23 516 538 516 538 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF594-201 - 807 6.7e-107 344.4 177.3 17 26 0.86 1e+03 0.5 0.0 5 16 544 555 542 556 0.83 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF594-201 - 807 6.7e-107 344.4 177.3 18 26 9.1e-06 0.011 16.2 0.1 3 23 570 590 568 590 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF594-201 - 807 6.7e-107 344.4 177.3 19 26 6.2e-09 7.4e-06 26.1 2.1 1 23 596 618 596 618 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF594-201 - 807 6.7e-107 344.4 177.3 20 26 1.1e-08 1.3e-05 25.3 1.7 1 23 624 646 624 646 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF594-201 - 807 6.7e-107 344.4 177.3 21 26 7.8e-09 9.3e-06 25.8 1.1 1 23 652 674 652 674 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF594-201 - 807 6.7e-107 344.4 177.3 22 26 1.3e-07 0.00015 22.0 0.7 1 23 680 702 680 702 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF594-201 - 807 6.7e-107 344.4 177.3 23 26 0.0038 4.5 7.9 1.8 1 23 708 730 708 730 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF594-201 - 807 6.7e-107 344.4 177.3 24 26 0.52 6.2e+02 1.2 0.0 5 18 737 750 736 755 0.85 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF594-201 - 807 6.7e-107 344.4 177.3 25 26 2e-05 0.023 15.1 0.5 3 23 763 783 761 783 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF594-201 - 807 6.7e-107 344.4 177.3 26 26 0.086 1e+02 3.6 0.5 1 9 789 797 789 800 0.93 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZNF594-201 - 807 2.1e-54 177.4 171.5 1 27 2.3 2.7e+03 -0.3 0.0 9 21 37 49 30 51 0.68 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF594-201 - 807 2.1e-54 177.4 171.5 2 27 0.54 6.5e+02 1.7 0.1 7 23 105 121 105 122 0.90 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF594-201 - 807 2.1e-54 177.4 171.5 3 27 4.4e-05 0.053 14.4 0.4 1 23 127 149 127 150 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF594-201 - 807 2.1e-54 177.4 171.5 4 27 0.0057 6.9 7.8 0.1 1 23 155 177 155 178 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF594-201 - 807 2.1e-54 177.4 171.5 5 27 2.4e-05 0.029 15.2 1.0 1 23 183 205 183 206 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF594-201 - 807 2.1e-54 177.4 171.5 6 27 0.00011 0.13 13.2 0.3 1 23 211 233 211 234 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF594-201 - 807 2.1e-54 177.4 171.5 7 27 0.00037 0.45 11.5 0.6 1 23 239 261 239 262 0.89 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF594-201 - 807 2.1e-54 177.4 171.5 8 27 0.00057 0.68 10.9 1.0 1 23 267 289 267 290 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF594-201 - 807 2.1e-54 177.4 171.5 9 27 0.0056 6.7 7.8 3.6 2 23 296 317 295 318 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF594-201 - 807 2.1e-54 177.4 171.5 10 27 1.7e-05 0.02 15.7 1.7 1 23 323 345 323 346 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF594-201 - 807 2.1e-54 177.4 171.5 11 27 2.2 2.6e+03 -0.2 0.0 5 16 352 363 351 365 0.71 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF594-201 - 807 2.1e-54 177.4 171.5 12 27 2e-05 0.024 15.5 0.2 1 23 376 398 376 399 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF594-201 - 807 2.1e-54 177.4 171.5 13 27 2.1e-06 0.0025 18.5 1.5 1 23 404 426 404 427 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF594-201 - 807 2.1e-54 177.4 171.5 14 27 0.00017 0.2 12.6 3.5 2 23 433 454 432 455 0.91 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF594-201 - 807 2.1e-54 177.4 171.5 15 27 1.4e-05 0.017 15.9 1.3 1 23 460 482 460 483 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF594-201 - 807 2.1e-54 177.4 171.5 16 27 1.5e-05 0.018 15.8 0.6 1 23 488 510 488 511 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF594-201 - 807 2.1e-54 177.4 171.5 17 27 0.028 33 5.7 0.6 1 23 516 538 516 539 0.80 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF594-201 - 807 2.1e-54 177.4 171.5 18 27 2.7 3.2e+03 -0.5 0.0 6 17 545 556 543 557 0.77 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF594-201 - 807 2.1e-54 177.4 171.5 19 27 1.9e-05 0.022 15.6 0.2 1 23 568 590 568 591 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF594-201 - 807 2.1e-54 177.4 171.5 20 27 2.1e-06 0.0025 18.5 1.5 1 23 596 618 596 619 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF594-201 - 807 2.1e-54 177.4 171.5 21 27 3.5e-05 0.042 14.7 1.1 1 23 624 646 624 647 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF594-201 - 807 2.1e-54 177.4 171.5 22 27 1.6e-05 0.019 15.8 1.1 1 23 652 674 652 675 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF594-201 - 807 2.1e-54 177.4 171.5 23 27 0.0001 0.12 13.2 0.6 1 23 680 702 680 703 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF594-201 - 807 2.1e-54 177.4 171.5 24 27 0.0084 10 7.3 1.6 1 23 708 730 708 731 0.86 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF594-201 - 807 2.1e-54 177.4 171.5 25 27 1.5 1.8e+03 0.3 0.0 5 17 737 749 736 750 0.72 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF594-201 - 807 2.1e-54 177.4 171.5 26 27 1.1e-05 0.013 16.3 0.5 1 23 761 783 761 784 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF594-201 - 807 2.1e-54 177.4 171.5 27 27 0.96 1.1e+03 0.9 0.7 1 9 789 797 789 797 0.89 C2H2-type zinc finger Zn-ribbon_8 PF09723.10 40 ZNF594-201 - 807 1.3e-23 82.8 119.1 1 15 8.9e-06 0.011 15.9 2.0 6 35 127 163 126 167 0.91 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF594-201 - 807 1.3e-23 82.8 119.1 2 15 0.011 13 6.0 0.3 6 17 183 194 182 205 0.82 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF594-201 - 807 1.3e-23 82.8 119.1 3 15 8.1e-06 0.0097 16.0 1.0 6 35 211 247 210 251 0.87 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF594-201 - 807 1.3e-23 82.8 119.1 4 15 0.00036 0.43 10.7 2.5 6 37 267 305 266 307 0.89 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF594-201 - 807 1.3e-23 82.8 119.1 5 15 0.0059 7 6.9 2.7 6 30 323 354 322 360 0.79 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF594-201 - 807 1.3e-23 82.8 119.1 6 15 0.052 62 3.8 3.5 10 35 352 384 351 387 0.80 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF594-201 - 807 1.3e-23 82.8 119.1 7 15 2.3e-05 0.027 14.6 4.1 6 35 404 440 403 442 0.89 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF594-201 - 807 1.3e-23 82.8 119.1 8 15 1.7e-06 0.002 18.2 3.1 6 39 460 500 459 501 0.93 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF594-201 - 807 1.3e-23 82.8 119.1 9 15 0.039 47 4.2 2.1 6 22 516 538 515 555 0.70 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF594-201 - 807 1.3e-23 82.8 119.1 10 15 0.046 55 4.0 1.4 12 35 546 576 541 580 0.66 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF594-201 - 807 1.3e-23 82.8 119.1 11 15 0.079 95 3.2 0.0 6 16 568 578 566 591 0.83 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF594-201 - 807 1.3e-23 82.8 119.1 12 15 5.8e-06 0.0069 16.5 1.9 6 35 596 632 595 635 0.89 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF594-201 - 807 1.3e-23 82.8 119.1 13 15 2.6e-06 0.0031 17.6 2.8 6 38 652 691 651 693 0.92 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF594-201 - 807 1.3e-23 82.8 119.1 14 15 0.023 28 4.9 2.1 6 30 708 739 707 748 0.72 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF594-201 - 807 1.3e-23 82.8 119.1 15 15 0.00081 0.97 9.6 2.3 6 34 761 796 760 802 0.80 Zinc ribbon domain zf-C2H2_6 PF13912.6 27 ZNF594-201 - 807 2e-19 69.1 146.7 1 24 3e-05 0.036 14.1 0.3 2 21 127 146 126 150 0.84 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF594-201 - 807 2e-19 69.1 146.7 2 24 0.14 1.6e+02 2.4 0.6 2 9 155 162 155 163 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF594-201 - 807 2e-19 69.1 146.7 3 24 0.003 3.6 7.7 0.9 2 21 183 202 183 206 0.81 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF594-201 - 807 2e-19 69.1 146.7 4 24 0.00087 1 9.4 0.7 2 12 211 221 211 222 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF594-201 - 807 2e-19 69.1 146.7 5 24 0.012 14 5.8 0.4 2 20 239 257 239 263 0.81 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF594-201 - 807 2e-19 69.1 146.7 6 24 0.085 1e+02 3.1 2.8 3 22 296 315 296 320 0.79 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF594-201 - 807 2e-19 69.1 146.7 7 24 0.0064 7.7 6.6 0.3 2 12 323 333 323 337 0.95 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF594-201 - 807 2e-19 69.1 146.7 8 24 1.3 1.5e+03 -0.7 0.1 6 12 352 358 351 364 0.87 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF594-201 - 807 2e-19 69.1 146.7 9 24 0.082 98 3.1 0.1 2 12 376 386 375 399 0.77 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF594-201 - 807 2e-19 69.1 146.7 10 24 0.00011 0.13 12.3 0.6 2 12 404 414 404 426 0.84 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF594-201 - 807 2e-19 69.1 146.7 11 24 0.0079 9.5 6.4 0.3 4 12 434 442 433 454 0.83 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF594-201 - 807 2e-19 69.1 146.7 12 24 0.00061 0.73 9.9 0.8 2 12 460 470 460 482 0.87 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF594-201 - 807 2e-19 69.1 146.7 13 24 0.00053 0.64 10.1 0.3 2 24 488 510 488 513 0.82 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF594-201 - 807 2e-19 69.1 146.7 14 24 0.0025 3 8.0 1.1 2 11 516 525 516 525 0.96 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF594-201 - 807 2e-19 69.1 146.7 15 24 2.7 3.3e+03 -1.7 0.0 6 12 544 550 544 555 0.92 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF594-201 - 807 2e-19 69.1 146.7 16 24 0.039 47 4.1 0.1 2 12 568 578 567 593 0.77 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF594-201 - 807 2e-19 69.1 146.7 17 24 0.00011 0.13 12.3 0.6 2 12 596 606 596 618 0.84 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF594-201 - 807 2e-19 69.1 146.7 18 24 0.0015 1.8 8.7 0.8 2 20 624 642 624 648 0.81 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF594-201 - 807 2e-19 69.1 146.7 19 24 0.0034 4.1 7.5 3.5 2 12 652 662 652 674 0.82 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF594-201 - 807 2e-19 69.1 146.7 20 24 0.0024 2.8 8.0 0.3 2 24 680 702 680 705 0.82 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF594-201 - 807 2e-19 69.1 146.7 21 24 0.0012 1.5 8.9 0.3 2 11 708 717 708 718 0.96 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF594-201 - 807 2e-19 69.1 146.7 22 24 1.1 1.3e+03 -0.5 0.1 6 13 737 744 736 750 0.84 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF594-201 - 807 2e-19 69.1 146.7 23 24 0.0065 7.8 6.6 0.2 1 12 760 771 760 786 0.77 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF594-201 - 807 2e-19 69.1 146.7 24 24 0.014 17 5.6 1.4 2 10 789 797 789 797 0.94 C2H2-type zinc finger zf-C2H2_jaz PF12171.8 27 ZNF594-201 - 807 1.3e-16 60.3 89.5 1 21 8.6e-05 0.1 12.9 0.6 2 21 127 146 126 147 0.91 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF594-201 - 807 1.3e-16 60.3 89.5 2 21 0.0044 5.3 7.4 0.5 2 21 183 202 182 203 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF594-201 - 807 1.3e-16 60.3 89.5 3 21 0.00015 0.18 12.1 0.0 2 22 211 231 210 231 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF594-201 - 807 1.3e-16 60.3 89.5 4 21 0.07 84 3.6 1.0 2 22 295 315 294 315 0.90 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF594-201 - 807 1.3e-16 60.3 89.5 5 21 0.0048 5.7 7.3 0.1 2 22 323 343 322 343 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF594-201 - 807 1.3e-16 60.3 89.5 6 21 0.073 87 3.6 0.1 6 18 352 364 351 365 0.86 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF594-201 - 807 1.3e-16 60.3 89.5 7 21 0.09 1.1e+02 3.3 0.1 2 21 376 395 375 398 0.89 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF594-201 - 807 1.3e-16 60.3 89.5 8 21 0.00061 0.73 10.2 0.1 2 20 404 422 403 422 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF594-201 - 807 1.3e-16 60.3 89.5 9 21 1.3 1.6e+03 -0.5 0.0 7 20 437 450 434 450 0.88 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF594-201 - 807 1.3e-16 60.3 89.5 10 21 0.014 17 5.8 0.2 2 22 460 480 459 480 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF594-201 - 807 1.3e-16 60.3 89.5 11 21 0.033 39 4.7 0.0 4 21 490 507 487 508 0.90 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF594-201 - 807 1.3e-16 60.3 89.5 12 21 0.015 18 5.7 0.1 2 21 516 535 515 536 0.89 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF594-201 - 807 1.3e-16 60.3 89.5 13 21 1.1 1.3e+03 -0.1 0.0 6 17 544 555 543 557 0.78 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF594-201 - 807 1.3e-16 60.3 89.5 14 21 0.039 47 4.4 0.1 2 21 568 587 567 590 0.90 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF594-201 - 807 1.3e-16 60.3 89.5 15 21 0.00061 0.73 10.2 0.1 2 20 596 614 595 614 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF594-201 - 807 1.3e-16 60.3 89.5 16 21 0.55 6.6e+02 0.8 0.0 4 20 626 642 623 642 0.85 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF594-201 - 807 1.3e-16 60.3 89.5 17 21 0.039 47 4.4 0.2 2 22 652 672 651 672 0.90 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF594-201 - 807 1.3e-16 60.3 89.5 18 21 0.17 2e+02 2.4 0.4 2 21 708 727 707 728 0.76 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF594-201 - 807 1.3e-16 60.3 89.5 19 21 0.069 82 3.7 0.1 6 18 737 749 736 750 0.86 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF594-201 - 807 1.3e-16 60.3 89.5 20 21 0.0017 2.1 8.8 0.2 2 21 761 780 760 783 0.90 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF594-201 - 807 1.3e-16 60.3 89.5 21 21 0.52 6.2e+02 0.9 0.2 2 10 789 797 788 797 0.87 Zinc-finger double-stranded RNA-binding zinc_ribbon_15 PF17032.5 86 ZNF594-201 - 807 1.3e-11 45.1 107.9 1 15 0.0047 5.6 7.8 3.8 31 79 120 168 114 173 0.86 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF594-201 - 807 1.3e-11 45.1 107.9 2 15 0.00054 0.64 10.8 1.1 31 77 176 222 170 226 0.83 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF594-201 - 807 1.3e-11 45.1 107.9 3 15 0.0032 3.8 8.3 0.4 38 78 239 279 229 285 0.84 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF594-201 - 807 1.3e-11 45.1 107.9 4 15 1.5e-05 0.018 15.8 1.1 26 80 283 337 279 341 0.88 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF594-201 - 807 1.3e-11 45.1 107.9 5 15 0.0023 2.7 8.8 1.7 39 76 349 386 338 391 0.87 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF594-201 - 807 1.3e-11 45.1 107.9 6 15 0.02 23 5.8 6.6 40 76 406 442 390 475 0.58 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF594-201 - 807 1.3e-11 45.1 107.9 7 15 0.001 1.2 9.9 1.2 30 75 452 497 447 502 0.85 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF594-201 - 807 1.3e-11 45.1 107.9 8 15 0.0033 3.9 8.3 0.9 30 74 480 524 474 531 0.85 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF594-201 - 807 1.3e-11 45.1 107.9 9 15 0.0074 8.8 7.2 0.2 42 77 544 579 525 584 0.89 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF594-201 - 807 1.3e-11 45.1 107.9 10 15 0.00035 0.42 11.4 2.3 31 78 561 608 559 611 0.89 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF594-201 - 807 1.3e-11 45.1 107.9 11 15 0.00059 0.71 10.7 1.4 35 76 593 634 583 639 0.85 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF594-201 - 807 1.3e-11 45.1 107.9 12 15 0.00049 0.59 10.9 0.8 32 78 618 664 611 670 0.86 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF594-201 - 807 1.3e-11 45.1 107.9 13 15 0.00033 0.39 11.5 0.9 29 75 643 689 639 695 0.84 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF594-201 - 807 1.3e-11 45.1 107.9 14 15 0.0017 2 9.2 0.7 31 74 673 716 666 726 0.86 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF594-201 - 807 1.3e-11 45.1 107.9 15 15 0.014 16 6.3 7.6 42 78 737 773 717 802 0.63 zinc-ribbon family # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF594-201.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF594-201.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF594-201.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF594-201.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF594-201.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:10:24 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZNF594-202 - 807 2.2e-134 432.5 158.9 1 25 6.5e-07 0.00078 19.8 1.0 1 25 113 137 113 138 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF594-202 - 807 2.2e-134 432.5 158.9 2 25 1.2e-07 0.00015 22.1 0.1 2 23 142 163 141 166 0.87 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF594-202 - 807 2.2e-134 432.5 158.9 3 25 5.8e-08 6.9e-05 23.1 0.4 2 25 170 193 169 194 0.90 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF594-202 - 807 2.2e-134 432.5 158.9 4 25 4.2e-10 5e-07 29.9 0.3 1 25 197 221 197 221 0.98 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF594-202 - 807 2.2e-134 432.5 158.9 5 25 1.9e-07 0.00023 21.4 0.2 1 25 225 249 225 250 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF594-202 - 807 2.2e-134 432.5 158.9 6 25 2.7e-08 3.2e-05 24.1 0.2 5 25 257 277 253 278 0.90 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF594-202 - 807 2.2e-134 432.5 158.9 7 25 4.6e-09 5.5e-06 26.6 1.1 3 25 283 305 281 306 0.89 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF594-202 - 807 2.2e-134 432.5 158.9 8 25 1e-08 1.2e-05 25.5 3.8 1 25 309 333 309 333 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF594-202 - 807 2.2e-134 432.5 158.9 9 25 0.024 28 5.4 0.2 3 24 339 357 337 359 0.77 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF594-202 - 807 2.2e-134 432.5 158.9 10 25 0.19 2.3e+02 2.5 0.1 7 24 368 385 367 385 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF594-202 - 807 2.2e-134 432.5 158.9 11 25 2.3e-11 2.7e-08 33.9 0.4 2 25 391 414 390 415 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF594-202 - 807 2.2e-134 432.5 158.9 12 25 7.6e-07 0.0009 19.6 2.8 2 24 419 441 418 442 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF594-202 - 807 2.2e-134 432.5 158.9 13 25 3e-12 3.6e-09 36.6 0.6 1 25 446 470 446 471 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF594-202 - 807 2.2e-134 432.5 158.9 14 25 3.4e-11 4.1e-08 33.3 1.5 1 25 474 498 474 499 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF594-202 - 807 2.2e-134 432.5 158.9 15 25 3.3e-09 3.9e-06 27.0 0.3 3 24 504 525 503 526 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF594-202 - 807 2.2e-134 432.5 158.9 16 25 0.0069 8.3 7.0 0.1 3 18 532 546 530 551 0.82 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF594-202 - 807 2.2e-134 432.5 158.9 17 25 1.5 1.8e+03 -0.4 0.1 9 24 562 577 559 577 0.76 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF594-202 - 807 2.2e-134 432.5 158.9 18 25 4e-10 4.8e-07 29.9 0.7 2 25 583 606 582 607 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF594-202 - 807 2.2e-134 432.5 158.9 19 25 5.1e-09 6.1e-06 26.4 1.4 2 24 611 633 610 634 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF594-202 - 807 2.2e-134 432.5 158.9 20 25 1.6e-11 1.9e-08 34.3 0.6 2 25 639 662 638 663 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF594-202 - 807 2.2e-134 432.5 158.9 21 25 4.3e-10 5.2e-07 29.8 0.8 1 25 666 690 666 691 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF594-202 - 807 2.2e-134 432.5 158.9 22 25 7.1e-09 8.5e-06 26.0 0.7 3 24 696 717 695 717 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF594-202 - 807 2.2e-134 432.5 158.9 23 25 0.06 71 4.1 0.2 3 24 724 742 722 744 0.75 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF594-202 - 807 2.2e-134 432.5 158.9 24 25 0.14 1.7e+02 2.9 0.4 7 24 753 770 752 770 0.89 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF594-202 - 807 2.2e-134 432.5 158.9 25 25 2.8e-08 3.4e-05 24.1 1.1 2 23 776 797 775 797 0.94 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZNF594-202 - 807 6.7e-107 344.4 177.3 1 26 0.0049 5.8 7.6 0.1 7 23 105 121 105 121 0.92 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF594-202 - 807 6.7e-107 344.4 177.3 2 26 3.3e-09 3.9e-06 27.0 0.6 1 23 127 149 127 149 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF594-202 - 807 6.7e-107 344.4 177.3 3 26 1.4e-07 0.00017 21.8 0.1 1 23 155 177 155 177 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF594-202 - 807 6.7e-107 344.4 177.3 4 26 1.5e-08 1.7e-05 25.0 1.2 1 23 183 205 183 205 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF594-202 - 807 6.7e-107 344.4 177.3 5 26 6.6e-09 7.9e-06 26.1 0.2 1 23 211 233 211 233 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF594-202 - 807 6.7e-107 344.4 177.3 6 26 3.9e-07 0.00047 20.5 1.0 1 23 239 261 239 261 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF594-202 - 807 6.7e-107 344.4 177.3 7 26 5.5e-07 0.00066 20.0 1.1 1 23 267 289 267 289 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF594-202 - 807 6.7e-107 344.4 177.3 8 26 5.5e-07 0.00065 20.0 4.0 2 23 296 317 295 317 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF594-202 - 807 6.7e-107 344.4 177.3 9 26 1.3e-06 0.0016 18.8 3.0 1 23 323 345 323 345 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF594-202 - 807 6.7e-107 344.4 177.3 10 26 1.1 1.3e+03 0.1 0.0 5 17 352 364 351 365 0.81 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF594-202 - 807 6.7e-107 344.4 177.3 11 26 3.8e-05 0.045 14.2 0.2 3 23 378 398 376 398 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF594-202 - 807 6.7e-107 344.4 177.3 12 26 6.2e-09 7.4e-06 26.1 2.1 1 23 404 426 404 426 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF594-202 - 807 6.7e-107 344.4 177.3 13 26 3.4e-07 0.0004 20.7 4.0 2 23 433 454 432 454 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF594-202 - 807 6.7e-107 344.4 177.3 14 26 6.1e-09 7.2e-06 26.2 1.3 1 23 460 482 460 482 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF594-202 - 807 6.7e-107 344.4 177.3 15 26 3.3e-09 3.9e-06 27.0 0.8 1 23 488 510 488 510 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF594-202 - 807 6.7e-107 344.4 177.3 16 26 0.0011 1.4 9.5 0.4 1 23 516 538 516 538 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF594-202 - 807 6.7e-107 344.4 177.3 17 26 0.86 1e+03 0.5 0.0 5 16 544 555 542 556 0.83 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF594-202 - 807 6.7e-107 344.4 177.3 18 26 9.1e-06 0.011 16.2 0.1 3 23 570 590 568 590 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF594-202 - 807 6.7e-107 344.4 177.3 19 26 6.2e-09 7.4e-06 26.1 2.1 1 23 596 618 596 618 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF594-202 - 807 6.7e-107 344.4 177.3 20 26 1.1e-08 1.3e-05 25.3 1.7 1 23 624 646 624 646 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF594-202 - 807 6.7e-107 344.4 177.3 21 26 7.8e-09 9.3e-06 25.8 1.1 1 23 652 674 652 674 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF594-202 - 807 6.7e-107 344.4 177.3 22 26 1.3e-07 0.00015 22.0 0.7 1 23 680 702 680 702 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF594-202 - 807 6.7e-107 344.4 177.3 23 26 0.0038 4.5 7.9 1.8 1 23 708 730 708 730 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF594-202 - 807 6.7e-107 344.4 177.3 24 26 0.52 6.2e+02 1.2 0.0 5 18 737 750 736 755 0.85 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF594-202 - 807 6.7e-107 344.4 177.3 25 26 2e-05 0.023 15.1 0.5 3 23 763 783 761 783 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF594-202 - 807 6.7e-107 344.4 177.3 26 26 0.086 1e+02 3.6 0.5 1 9 789 797 789 800 0.93 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZNF594-202 - 807 2.1e-54 177.4 171.5 1 27 2.3 2.7e+03 -0.3 0.0 9 21 37 49 30 51 0.68 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF594-202 - 807 2.1e-54 177.4 171.5 2 27 0.54 6.5e+02 1.7 0.1 7 23 105 121 105 122 0.90 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF594-202 - 807 2.1e-54 177.4 171.5 3 27 4.4e-05 0.053 14.4 0.4 1 23 127 149 127 150 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF594-202 - 807 2.1e-54 177.4 171.5 4 27 0.0057 6.9 7.8 0.1 1 23 155 177 155 178 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF594-202 - 807 2.1e-54 177.4 171.5 5 27 2.4e-05 0.029 15.2 1.0 1 23 183 205 183 206 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF594-202 - 807 2.1e-54 177.4 171.5 6 27 0.00011 0.13 13.2 0.3 1 23 211 233 211 234 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF594-202 - 807 2.1e-54 177.4 171.5 7 27 0.00037 0.45 11.5 0.6 1 23 239 261 239 262 0.89 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF594-202 - 807 2.1e-54 177.4 171.5 8 27 0.00057 0.68 10.9 1.0 1 23 267 289 267 290 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF594-202 - 807 2.1e-54 177.4 171.5 9 27 0.0056 6.7 7.8 3.6 2 23 296 317 295 318 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF594-202 - 807 2.1e-54 177.4 171.5 10 27 1.7e-05 0.02 15.7 1.7 1 23 323 345 323 346 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF594-202 - 807 2.1e-54 177.4 171.5 11 27 2.2 2.6e+03 -0.2 0.0 5 16 352 363 351 365 0.71 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF594-202 - 807 2.1e-54 177.4 171.5 12 27 2e-05 0.024 15.5 0.2 1 23 376 398 376 399 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF594-202 - 807 2.1e-54 177.4 171.5 13 27 2.1e-06 0.0025 18.5 1.5 1 23 404 426 404 427 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF594-202 - 807 2.1e-54 177.4 171.5 14 27 0.00017 0.2 12.6 3.5 2 23 433 454 432 455 0.91 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF594-202 - 807 2.1e-54 177.4 171.5 15 27 1.4e-05 0.017 15.9 1.3 1 23 460 482 460 483 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF594-202 - 807 2.1e-54 177.4 171.5 16 27 1.5e-05 0.018 15.8 0.6 1 23 488 510 488 511 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF594-202 - 807 2.1e-54 177.4 171.5 17 27 0.028 33 5.7 0.6 1 23 516 538 516 539 0.80 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF594-202 - 807 2.1e-54 177.4 171.5 18 27 2.7 3.2e+03 -0.5 0.0 6 17 545 556 543 557 0.77 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF594-202 - 807 2.1e-54 177.4 171.5 19 27 1.9e-05 0.022 15.6 0.2 1 23 568 590 568 591 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF594-202 - 807 2.1e-54 177.4 171.5 20 27 2.1e-06 0.0025 18.5 1.5 1 23 596 618 596 619 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF594-202 - 807 2.1e-54 177.4 171.5 21 27 3.5e-05 0.042 14.7 1.1 1 23 624 646 624 647 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF594-202 - 807 2.1e-54 177.4 171.5 22 27 1.6e-05 0.019 15.8 1.1 1 23 652 674 652 675 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF594-202 - 807 2.1e-54 177.4 171.5 23 27 0.0001 0.12 13.2 0.6 1 23 680 702 680 703 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF594-202 - 807 2.1e-54 177.4 171.5 24 27 0.0084 10 7.3 1.6 1 23 708 730 708 731 0.86 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF594-202 - 807 2.1e-54 177.4 171.5 25 27 1.5 1.8e+03 0.3 0.0 5 17 737 749 736 750 0.72 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF594-202 - 807 2.1e-54 177.4 171.5 26 27 1.1e-05 0.013 16.3 0.5 1 23 761 783 761 784 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF594-202 - 807 2.1e-54 177.4 171.5 27 27 0.96 1.1e+03 0.9 0.7 1 9 789 797 789 797 0.89 C2H2-type zinc finger Zn-ribbon_8 PF09723.10 40 ZNF594-202 - 807 1.3e-23 82.8 119.1 1 15 8.9e-06 0.011 15.9 2.0 6 35 127 163 126 167 0.91 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF594-202 - 807 1.3e-23 82.8 119.1 2 15 0.011 13 6.0 0.3 6 17 183 194 182 205 0.82 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF594-202 - 807 1.3e-23 82.8 119.1 3 15 8.1e-06 0.0097 16.0 1.0 6 35 211 247 210 251 0.87 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF594-202 - 807 1.3e-23 82.8 119.1 4 15 0.00036 0.43 10.7 2.5 6 37 267 305 266 307 0.89 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF594-202 - 807 1.3e-23 82.8 119.1 5 15 0.0059 7 6.9 2.7 6 30 323 354 322 360 0.79 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF594-202 - 807 1.3e-23 82.8 119.1 6 15 0.052 62 3.8 3.5 10 35 352 384 351 387 0.80 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF594-202 - 807 1.3e-23 82.8 119.1 7 15 2.3e-05 0.027 14.6 4.1 6 35 404 440 403 442 0.89 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF594-202 - 807 1.3e-23 82.8 119.1 8 15 1.7e-06 0.002 18.2 3.1 6 39 460 500 459 501 0.93 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF594-202 - 807 1.3e-23 82.8 119.1 9 15 0.039 47 4.2 2.1 6 22 516 538 515 555 0.70 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF594-202 - 807 1.3e-23 82.8 119.1 10 15 0.046 55 4.0 1.4 12 35 546 576 541 580 0.66 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF594-202 - 807 1.3e-23 82.8 119.1 11 15 0.079 95 3.2 0.0 6 16 568 578 566 591 0.83 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF594-202 - 807 1.3e-23 82.8 119.1 12 15 5.8e-06 0.0069 16.5 1.9 6 35 596 632 595 635 0.89 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF594-202 - 807 1.3e-23 82.8 119.1 13 15 2.6e-06 0.0031 17.6 2.8 6 38 652 691 651 693 0.92 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF594-202 - 807 1.3e-23 82.8 119.1 14 15 0.023 28 4.9 2.1 6 30 708 739 707 748 0.72 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF594-202 - 807 1.3e-23 82.8 119.1 15 15 0.00081 0.97 9.6 2.3 6 34 761 796 760 802 0.80 Zinc ribbon domain zf-C2H2_6 PF13912.6 27 ZNF594-202 - 807 2e-19 69.1 146.7 1 24 3e-05 0.036 14.1 0.3 2 21 127 146 126 150 0.84 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF594-202 - 807 2e-19 69.1 146.7 2 24 0.14 1.6e+02 2.4 0.6 2 9 155 162 155 163 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF594-202 - 807 2e-19 69.1 146.7 3 24 0.003 3.6 7.7 0.9 2 21 183 202 183 206 0.81 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF594-202 - 807 2e-19 69.1 146.7 4 24 0.00087 1 9.4 0.7 2 12 211 221 211 222 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF594-202 - 807 2e-19 69.1 146.7 5 24 0.012 14 5.8 0.4 2 20 239 257 239 263 0.81 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF594-202 - 807 2e-19 69.1 146.7 6 24 0.085 1e+02 3.1 2.8 3 22 296 315 296 320 0.79 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF594-202 - 807 2e-19 69.1 146.7 7 24 0.0064 7.7 6.6 0.3 2 12 323 333 323 337 0.95 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF594-202 - 807 2e-19 69.1 146.7 8 24 1.3 1.5e+03 -0.7 0.1 6 12 352 358 351 364 0.87 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF594-202 - 807 2e-19 69.1 146.7 9 24 0.082 98 3.1 0.1 2 12 376 386 375 399 0.77 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF594-202 - 807 2e-19 69.1 146.7 10 24 0.00011 0.13 12.3 0.6 2 12 404 414 404 426 0.84 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF594-202 - 807 2e-19 69.1 146.7 11 24 0.0079 9.5 6.4 0.3 4 12 434 442 433 454 0.83 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF594-202 - 807 2e-19 69.1 146.7 12 24 0.00061 0.73 9.9 0.8 2 12 460 470 460 482 0.87 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF594-202 - 807 2e-19 69.1 146.7 13 24 0.00053 0.64 10.1 0.3 2 24 488 510 488 513 0.82 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF594-202 - 807 2e-19 69.1 146.7 14 24 0.0025 3 8.0 1.1 2 11 516 525 516 525 0.96 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF594-202 - 807 2e-19 69.1 146.7 15 24 2.7 3.3e+03 -1.7 0.0 6 12 544 550 544 555 0.92 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF594-202 - 807 2e-19 69.1 146.7 16 24 0.039 47 4.1 0.1 2 12 568 578 567 593 0.77 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF594-202 - 807 2e-19 69.1 146.7 17 24 0.00011 0.13 12.3 0.6 2 12 596 606 596 618 0.84 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF594-202 - 807 2e-19 69.1 146.7 18 24 0.0015 1.8 8.7 0.8 2 20 624 642 624 648 0.81 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF594-202 - 807 2e-19 69.1 146.7 19 24 0.0034 4.1 7.5 3.5 2 12 652 662 652 674 0.82 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF594-202 - 807 2e-19 69.1 146.7 20 24 0.0024 2.8 8.0 0.3 2 24 680 702 680 705 0.82 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF594-202 - 807 2e-19 69.1 146.7 21 24 0.0012 1.5 8.9 0.3 2 11 708 717 708 718 0.96 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF594-202 - 807 2e-19 69.1 146.7 22 24 1.1 1.3e+03 -0.5 0.1 6 13 737 744 736 750 0.84 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF594-202 - 807 2e-19 69.1 146.7 23 24 0.0065 7.8 6.6 0.2 1 12 760 771 760 786 0.77 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF594-202 - 807 2e-19 69.1 146.7 24 24 0.014 17 5.6 1.4 2 10 789 797 789 797 0.94 C2H2-type zinc finger zf-C2H2_jaz PF12171.8 27 ZNF594-202 - 807 1.3e-16 60.3 89.5 1 21 8.6e-05 0.1 12.9 0.6 2 21 127 146 126 147 0.91 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF594-202 - 807 1.3e-16 60.3 89.5 2 21 0.0044 5.3 7.4 0.5 2 21 183 202 182 203 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF594-202 - 807 1.3e-16 60.3 89.5 3 21 0.00015 0.18 12.1 0.0 2 22 211 231 210 231 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF594-202 - 807 1.3e-16 60.3 89.5 4 21 0.07 84 3.6 1.0 2 22 295 315 294 315 0.90 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF594-202 - 807 1.3e-16 60.3 89.5 5 21 0.0048 5.7 7.3 0.1 2 22 323 343 322 343 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF594-202 - 807 1.3e-16 60.3 89.5 6 21 0.073 87 3.6 0.1 6 18 352 364 351 365 0.86 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF594-202 - 807 1.3e-16 60.3 89.5 7 21 0.09 1.1e+02 3.3 0.1 2 21 376 395 375 398 0.89 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF594-202 - 807 1.3e-16 60.3 89.5 8 21 0.00061 0.73 10.2 0.1 2 20 404 422 403 422 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF594-202 - 807 1.3e-16 60.3 89.5 9 21 1.3 1.6e+03 -0.5 0.0 7 20 437 450 434 450 0.88 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF594-202 - 807 1.3e-16 60.3 89.5 10 21 0.014 17 5.8 0.2 2 22 460 480 459 480 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF594-202 - 807 1.3e-16 60.3 89.5 11 21 0.033 39 4.7 0.0 4 21 490 507 487 508 0.90 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF594-202 - 807 1.3e-16 60.3 89.5 12 21 0.015 18 5.7 0.1 2 21 516 535 515 536 0.89 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF594-202 - 807 1.3e-16 60.3 89.5 13 21 1.1 1.3e+03 -0.1 0.0 6 17 544 555 543 557 0.78 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF594-202 - 807 1.3e-16 60.3 89.5 14 21 0.039 47 4.4 0.1 2 21 568 587 567 590 0.90 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF594-202 - 807 1.3e-16 60.3 89.5 15 21 0.00061 0.73 10.2 0.1 2 20 596 614 595 614 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF594-202 - 807 1.3e-16 60.3 89.5 16 21 0.55 6.6e+02 0.8 0.0 4 20 626 642 623 642 0.85 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF594-202 - 807 1.3e-16 60.3 89.5 17 21 0.039 47 4.4 0.2 2 22 652 672 651 672 0.90 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF594-202 - 807 1.3e-16 60.3 89.5 18 21 0.17 2e+02 2.4 0.4 2 21 708 727 707 728 0.76 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF594-202 - 807 1.3e-16 60.3 89.5 19 21 0.069 82 3.7 0.1 6 18 737 749 736 750 0.86 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF594-202 - 807 1.3e-16 60.3 89.5 20 21 0.0017 2.1 8.8 0.2 2 21 761 780 760 783 0.90 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF594-202 - 807 1.3e-16 60.3 89.5 21 21 0.52 6.2e+02 0.9 0.2 2 10 789 797 788 797 0.87 Zinc-finger double-stranded RNA-binding zinc_ribbon_15 PF17032.5 86 ZNF594-202 - 807 1.3e-11 45.1 107.9 1 15 0.0047 5.6 7.8 3.8 31 79 120 168 114 173 0.86 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF594-202 - 807 1.3e-11 45.1 107.9 2 15 0.00054 0.64 10.8 1.1 31 77 176 222 170 226 0.83 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF594-202 - 807 1.3e-11 45.1 107.9 3 15 0.0032 3.8 8.3 0.4 38 78 239 279 229 285 0.84 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF594-202 - 807 1.3e-11 45.1 107.9 4 15 1.5e-05 0.018 15.8 1.1 26 80 283 337 279 341 0.88 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF594-202 - 807 1.3e-11 45.1 107.9 5 15 0.0023 2.7 8.8 1.7 39 76 349 386 338 391 0.87 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF594-202 - 807 1.3e-11 45.1 107.9 6 15 0.02 23 5.8 6.6 40 76 406 442 390 475 0.58 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF594-202 - 807 1.3e-11 45.1 107.9 7 15 0.001 1.2 9.9 1.2 30 75 452 497 447 502 0.85 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF594-202 - 807 1.3e-11 45.1 107.9 8 15 0.0033 3.9 8.3 0.9 30 74 480 524 474 531 0.85 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF594-202 - 807 1.3e-11 45.1 107.9 9 15 0.0074 8.8 7.2 0.2 42 77 544 579 525 584 0.89 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF594-202 - 807 1.3e-11 45.1 107.9 10 15 0.00035 0.42 11.4 2.3 31 78 561 608 559 611 0.89 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF594-202 - 807 1.3e-11 45.1 107.9 11 15 0.00059 0.71 10.7 1.4 35 76 593 634 583 639 0.85 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF594-202 - 807 1.3e-11 45.1 107.9 12 15 0.00049 0.59 10.9 0.8 32 78 618 664 611 670 0.86 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF594-202 - 807 1.3e-11 45.1 107.9 13 15 0.00033 0.39 11.5 0.9 29 75 643 689 639 695 0.84 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF594-202 - 807 1.3e-11 45.1 107.9 14 15 0.0017 2 9.2 0.7 31 74 673 716 666 726 0.86 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF594-202 - 807 1.3e-11 45.1 107.9 15 15 0.014 16 6.3 7.6 42 78 737 773 717 802 0.63 zinc-ribbon family # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF594-202.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF594-202.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF594-202.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF594-202.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF594-202.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:10:25 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF594-203.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF594-203.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF594-203.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF594-203.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF594-203.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:10:25 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZNF596-201 - 504 9e-86 278.8 102.4 1 14 0.047 43 4.8 0.0 6 17 102 113 102 115 0.89 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF596-201 - 504 9e-86 278.8 102.4 2 14 7.7 6.9e+03 -2.2 0.1 2 11 154 163 153 167 0.78 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF596-201 - 504 9e-86 278.8 102.4 3 14 0.00015 0.14 12.7 0.3 2 25 182 205 181 206 0.87 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF596-201 - 504 9e-86 278.8 102.4 4 14 1.2e-09 1e-06 28.8 3.0 1 26 209 234 209 234 0.98 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF596-201 - 504 9e-86 278.8 102.4 5 14 1.2e-10 1.1e-07 31.9 2.1 1 25 237 261 237 262 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF596-201 - 504 9e-86 278.8 102.4 6 14 5.4e-06 0.0048 17.3 1.4 1 26 265 290 265 290 0.97 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF596-201 - 504 9e-86 278.8 102.4 7 14 9.2e-09 8.2e-06 26.0 0.3 1 25 293 317 293 318 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF596-201 - 504 9e-86 278.8 102.4 8 14 3.2e-11 2.8e-08 33.8 3.6 2 26 322 346 321 346 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF596-201 - 504 9e-86 278.8 102.4 9 14 1.4e-08 1.3e-05 25.4 3.6 1 25 349 373 349 374 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF596-201 - 504 9e-86 278.8 102.4 10 14 2.3e-12 2.1e-09 37.4 1.3 2 25 378 401 377 402 0.97 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF596-201 - 504 9e-86 278.8 102.4 11 14 3.6e-13 3.3e-10 39.9 3.3 1 26 405 430 405 430 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF596-201 - 504 9e-86 278.8 102.4 12 14 1e-12 9.2e-10 38.5 0.5 2 25 434 457 433 458 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF596-201 - 504 9e-86 278.8 102.4 13 14 1.9e-12 1.7e-09 37.7 0.9 1 25 461 485 461 486 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF596-201 - 504 9e-86 278.8 102.4 14 14 0.012 10 6.7 0.6 1 12 489 500 489 501 0.92 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZNF596-201 - 504 3.3e-54 178.4 116.3 1 13 0.45 4e+02 1.8 0.0 7 23 145 161 145 161 0.92 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF596-201 - 504 3.3e-54 178.4 116.3 2 13 7.8 7e+03 -2.1 0.0 8 23 174 189 173 189 0.79 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF596-201 - 504 3.3e-54 178.4 116.3 3 13 5.3e-08 4.7e-05 23.6 0.7 2 23 196 217 195 217 0.95 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF596-201 - 504 3.3e-54 178.4 116.3 4 13 2.9e-06 0.0026 18.1 7.7 3 23 225 245 225 245 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF596-201 - 504 3.3e-54 178.4 116.3 5 13 1.2e-07 0.00011 22.4 1.6 3 23 253 273 251 273 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF596-201 - 504 3.3e-54 178.4 116.3 6 13 8.2e-07 0.00074 19.8 6.6 3 23 281 301 280 301 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF596-201 - 504 3.3e-54 178.4 116.3 7 13 7.3e-06 0.0066 16.9 2.2 3 23 309 329 307 329 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF596-201 - 504 3.3e-54 178.4 116.3 8 13 1e-06 0.00092 19.5 8.9 1 23 335 357 335 357 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF596-201 - 504 3.3e-54 178.4 116.3 9 13 4.2e-06 0.0037 17.6 1.3 3 23 365 385 365 385 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF596-201 - 504 3.3e-54 178.4 116.3 10 13 2.9e-09 2.6e-06 27.5 1.4 1 23 391 413 391 413 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF596-201 - 504 3.3e-54 178.4 116.3 11 13 1.2e-07 0.00011 22.5 3.8 1 23 419 441 419 441 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF596-201 - 504 3.3e-54 178.4 116.3 12 13 5.5e-09 4.9e-06 26.7 1.2 1 23 447 469 447 469 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF596-201 - 504 3.3e-54 178.4 116.3 13 13 6e-08 5.4e-05 23.4 1.0 1 23 475 497 475 497 0.99 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZNF596-201 - 504 3.5e-34 114.5 106.7 1 12 1.3 1.1e+03 0.9 0.1 7 23 145 161 145 162 0.88 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF596-201 - 504 3.5e-34 114.5 106.7 2 12 4.1e-06 0.0037 18.0 0.5 2 23 196 217 195 218 0.89 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF596-201 - 504 3.5e-34 114.5 106.7 3 12 0.00051 0.45 11.5 6.9 3 23 225 245 223 246 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF596-201 - 504 3.5e-34 114.5 106.7 4 12 2.8e-05 0.025 15.4 1.1 2 23 252 273 251 274 0.89 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF596-201 - 504 3.5e-34 114.5 106.7 5 12 7.1e-05 0.064 14.1 4.8 2 23 280 301 279 302 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF596-201 - 504 3.5e-34 114.5 106.7 6 12 3.6e-05 0.032 15.0 2.1 2 23 308 329 307 330 0.89 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF596-201 - 504 3.5e-34 114.5 106.7 7 12 0.00013 0.12 13.3 7.7 1 23 335 357 335 358 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF596-201 - 504 3.5e-34 114.5 106.7 8 12 0.00021 0.18 12.7 1.8 3 23 365 385 363 386 0.88 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF596-201 - 504 3.5e-34 114.5 106.7 9 12 3.3e-07 0.0003 21.4 1.2 1 23 391 413 391 414 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF596-201 - 504 3.5e-34 114.5 106.7 10 12 2.5e-05 0.022 15.5 3.0 1 23 419 441 419 442 0.86 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF596-201 - 504 3.5e-34 114.5 106.7 11 12 2.5e-05 0.022 15.6 0.7 1 23 447 469 447 470 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF596-201 - 504 3.5e-34 114.5 106.7 12 12 1.4e-06 0.0013 19.4 0.9 1 23 475 497 475 498 0.96 C2H2-type zinc finger KRAB PF01352.27 42 ZNF596-201 - 504 2e-21 75.4 0.1 1 1 4.3e-24 3.9e-21 74.4 0.1 1 42 6 47 6 47 0.98 KRAB box zf-C2H2_jaz PF12171.8 27 ZNF596-201 - 504 1.5e-18 66.6 69.2 1 11 0.00037 0.33 11.3 0.0 3 21 196 214 194 214 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF596-201 - 504 1.5e-18 66.6 69.2 2 11 0.17 1.5e+02 2.8 3.5 4 24 225 245 223 245 0.95 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF596-201 - 504 1.5e-18 66.6 69.2 3 11 0.00091 0.81 10.0 0.0 4 21 253 270 250 270 0.95 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF596-201 - 504 1.5e-18 66.6 69.2 4 11 0.03 26 5.2 2.1 4 24 281 301 280 302 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF596-201 - 504 1.5e-18 66.6 69.2 5 11 0.0019 1.7 9.0 0.4 4 24 309 329 306 330 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF596-201 - 504 1.5e-18 66.6 69.2 6 11 0.0066 5.9 7.3 6.5 2 24 335 357 334 363 0.90 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF596-201 - 504 1.5e-18 66.6 69.2 7 11 0.0012 1 9.7 0.1 4 22 365 383 362 383 0.95 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF596-201 - 504 1.5e-18 66.6 69.2 8 11 7.8e-05 0.07 13.4 0.1 2 24 391 413 390 413 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF596-201 - 504 1.5e-18 66.6 69.2 9 11 5.4e-06 0.0048 17.1 0.3 2 24 419 441 418 441 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF596-201 - 504 1.5e-18 66.6 69.2 10 11 0.00075 0.68 10.3 0.1 2 21 447 466 446 467 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF596-201 - 504 1.5e-18 66.6 69.2 11 11 0.0017 1.5 9.2 0.3 2 24 475 497 474 500 0.90 Zinc-finger double-stranded RNA-binding zf-C2H2_6 PF13912.6 27 ZNF596-201 - 504 6.7e-12 45.1 100.7 1 11 0.00085 0.76 9.8 0.2 3 20 196 213 196 217 0.90 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF596-201 - 504 6.7e-12 45.1 100.7 2 11 0.016 14 5.8 7.4 2 24 223 245 223 248 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF596-201 - 504 6.7e-12 45.1 100.7 3 11 0.0032 2.9 8.0 0.9 2 20 251 269 251 273 0.91 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF596-201 - 504 6.7e-12 45.1 100.7 4 11 0.0044 3.9 7.6 4.7 3 25 280 302 280 303 0.95 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF596-201 - 504 6.7e-12 45.1 100.7 5 11 0.11 95 3.2 3.2 2 24 307 329 307 332 0.90 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF596-201 - 504 6.7e-12 45.1 100.7 6 11 0.066 59 3.8 8.9 2 24 335 357 335 360 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF596-201 - 504 6.7e-12 45.1 100.7 7 11 0.032 29 4.8 0.3 2 12 363 373 363 382 0.92 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF596-201 - 504 6.7e-12 45.1 100.7 8 11 7e-05 0.063 13.3 1.1 2 24 391 413 391 416 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF596-201 - 504 6.7e-12 45.1 100.7 9 11 0.00072 0.65 10.1 3.0 2 24 419 441 419 444 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF596-201 - 504 6.7e-12 45.1 100.7 10 11 4.1e-05 0.037 14.0 0.4 2 24 447 469 447 472 0.91 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF596-201 - 504 6.7e-12 45.1 100.7 11 11 4.6e-06 0.0041 17.1 1.4 2 26 475 499 475 500 0.95 C2H2-type zinc finger # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF596-201.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF596-201.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF596-201.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF596-201.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF596-201.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:10:26 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZNF596-202 - 504 9e-86 278.8 102.4 1 14 0.047 43 4.8 0.0 6 17 102 113 102 115 0.89 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF596-202 - 504 9e-86 278.8 102.4 2 14 7.7 6.9e+03 -2.2 0.1 2 11 154 163 153 167 0.78 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF596-202 - 504 9e-86 278.8 102.4 3 14 0.00015 0.14 12.7 0.3 2 25 182 205 181 206 0.87 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF596-202 - 504 9e-86 278.8 102.4 4 14 1.2e-09 1e-06 28.8 3.0 1 26 209 234 209 234 0.98 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF596-202 - 504 9e-86 278.8 102.4 5 14 1.2e-10 1.1e-07 31.9 2.1 1 25 237 261 237 262 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF596-202 - 504 9e-86 278.8 102.4 6 14 5.4e-06 0.0048 17.3 1.4 1 26 265 290 265 290 0.97 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF596-202 - 504 9e-86 278.8 102.4 7 14 9.2e-09 8.2e-06 26.0 0.3 1 25 293 317 293 318 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF596-202 - 504 9e-86 278.8 102.4 8 14 3.2e-11 2.8e-08 33.8 3.6 2 26 322 346 321 346 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF596-202 - 504 9e-86 278.8 102.4 9 14 1.4e-08 1.3e-05 25.4 3.6 1 25 349 373 349 374 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF596-202 - 504 9e-86 278.8 102.4 10 14 2.3e-12 2.1e-09 37.4 1.3 2 25 378 401 377 402 0.97 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF596-202 - 504 9e-86 278.8 102.4 11 14 3.6e-13 3.3e-10 39.9 3.3 1 26 405 430 405 430 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF596-202 - 504 9e-86 278.8 102.4 12 14 1e-12 9.2e-10 38.5 0.5 2 25 434 457 433 458 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF596-202 - 504 9e-86 278.8 102.4 13 14 1.9e-12 1.7e-09 37.7 0.9 1 25 461 485 461 486 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF596-202 - 504 9e-86 278.8 102.4 14 14 0.012 10 6.7 0.6 1 12 489 500 489 501 0.92 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZNF596-202 - 504 3.3e-54 178.4 116.3 1 13 0.45 4e+02 1.8 0.0 7 23 145 161 145 161 0.92 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF596-202 - 504 3.3e-54 178.4 116.3 2 13 7.8 7e+03 -2.1 0.0 8 23 174 189 173 189 0.79 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF596-202 - 504 3.3e-54 178.4 116.3 3 13 5.3e-08 4.7e-05 23.6 0.7 2 23 196 217 195 217 0.95 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF596-202 - 504 3.3e-54 178.4 116.3 4 13 2.9e-06 0.0026 18.1 7.7 3 23 225 245 225 245 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF596-202 - 504 3.3e-54 178.4 116.3 5 13 1.2e-07 0.00011 22.4 1.6 3 23 253 273 251 273 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF596-202 - 504 3.3e-54 178.4 116.3 6 13 8.2e-07 0.00074 19.8 6.6 3 23 281 301 280 301 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF596-202 - 504 3.3e-54 178.4 116.3 7 13 7.3e-06 0.0066 16.9 2.2 3 23 309 329 307 329 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF596-202 - 504 3.3e-54 178.4 116.3 8 13 1e-06 0.00092 19.5 8.9 1 23 335 357 335 357 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF596-202 - 504 3.3e-54 178.4 116.3 9 13 4.2e-06 0.0037 17.6 1.3 3 23 365 385 365 385 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF596-202 - 504 3.3e-54 178.4 116.3 10 13 2.9e-09 2.6e-06 27.5 1.4 1 23 391 413 391 413 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF596-202 - 504 3.3e-54 178.4 116.3 11 13 1.2e-07 0.00011 22.5 3.8 1 23 419 441 419 441 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF596-202 - 504 3.3e-54 178.4 116.3 12 13 5.5e-09 4.9e-06 26.7 1.2 1 23 447 469 447 469 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF596-202 - 504 3.3e-54 178.4 116.3 13 13 6e-08 5.4e-05 23.4 1.0 1 23 475 497 475 497 0.99 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZNF596-202 - 504 3.5e-34 114.5 106.7 1 12 1.3 1.1e+03 0.9 0.1 7 23 145 161 145 162 0.88 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF596-202 - 504 3.5e-34 114.5 106.7 2 12 4.1e-06 0.0037 18.0 0.5 2 23 196 217 195 218 0.89 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF596-202 - 504 3.5e-34 114.5 106.7 3 12 0.00051 0.45 11.5 6.9 3 23 225 245 223 246 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF596-202 - 504 3.5e-34 114.5 106.7 4 12 2.8e-05 0.025 15.4 1.1 2 23 252 273 251 274 0.89 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF596-202 - 504 3.5e-34 114.5 106.7 5 12 7.1e-05 0.064 14.1 4.8 2 23 280 301 279 302 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF596-202 - 504 3.5e-34 114.5 106.7 6 12 3.6e-05 0.032 15.0 2.1 2 23 308 329 307 330 0.89 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF596-202 - 504 3.5e-34 114.5 106.7 7 12 0.00013 0.12 13.3 7.7 1 23 335 357 335 358 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF596-202 - 504 3.5e-34 114.5 106.7 8 12 0.00021 0.18 12.7 1.8 3 23 365 385 363 386 0.88 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF596-202 - 504 3.5e-34 114.5 106.7 9 12 3.3e-07 0.0003 21.4 1.2 1 23 391 413 391 414 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF596-202 - 504 3.5e-34 114.5 106.7 10 12 2.5e-05 0.022 15.5 3.0 1 23 419 441 419 442 0.86 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF596-202 - 504 3.5e-34 114.5 106.7 11 12 2.5e-05 0.022 15.6 0.7 1 23 447 469 447 470 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF596-202 - 504 3.5e-34 114.5 106.7 12 12 1.4e-06 0.0013 19.4 0.9 1 23 475 497 475 498 0.96 C2H2-type zinc finger KRAB PF01352.27 42 ZNF596-202 - 504 2e-21 75.4 0.1 1 1 4.3e-24 3.9e-21 74.4 0.1 1 42 6 47 6 47 0.98 KRAB box zf-C2H2_jaz PF12171.8 27 ZNF596-202 - 504 1.5e-18 66.6 69.2 1 11 0.00037 0.33 11.3 0.0 3 21 196 214 194 214 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF596-202 - 504 1.5e-18 66.6 69.2 2 11 0.17 1.5e+02 2.8 3.5 4 24 225 245 223 245 0.95 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF596-202 - 504 1.5e-18 66.6 69.2 3 11 0.00091 0.81 10.0 0.0 4 21 253 270 250 270 0.95 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF596-202 - 504 1.5e-18 66.6 69.2 4 11 0.03 26 5.2 2.1 4 24 281 301 280 302 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF596-202 - 504 1.5e-18 66.6 69.2 5 11 0.0019 1.7 9.0 0.4 4 24 309 329 306 330 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF596-202 - 504 1.5e-18 66.6 69.2 6 11 0.0066 5.9 7.3 6.5 2 24 335 357 334 363 0.90 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF596-202 - 504 1.5e-18 66.6 69.2 7 11 0.0012 1 9.7 0.1 4 22 365 383 362 383 0.95 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF596-202 - 504 1.5e-18 66.6 69.2 8 11 7.8e-05 0.07 13.4 0.1 2 24 391 413 390 413 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF596-202 - 504 1.5e-18 66.6 69.2 9 11 5.4e-06 0.0048 17.1 0.3 2 24 419 441 418 441 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF596-202 - 504 1.5e-18 66.6 69.2 10 11 0.00075 0.68 10.3 0.1 2 21 447 466 446 467 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF596-202 - 504 1.5e-18 66.6 69.2 11 11 0.0017 1.5 9.2 0.3 2 24 475 497 474 500 0.90 Zinc-finger double-stranded RNA-binding zf-C2H2_6 PF13912.6 27 ZNF596-202 - 504 6.7e-12 45.1 100.7 1 11 0.00085 0.76 9.8 0.2 3 20 196 213 196 217 0.90 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF596-202 - 504 6.7e-12 45.1 100.7 2 11 0.016 14 5.8 7.4 2 24 223 245 223 248 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF596-202 - 504 6.7e-12 45.1 100.7 3 11 0.0032 2.9 8.0 0.9 2 20 251 269 251 273 0.91 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF596-202 - 504 6.7e-12 45.1 100.7 4 11 0.0044 3.9 7.6 4.7 3 25 280 302 280 303 0.95 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF596-202 - 504 6.7e-12 45.1 100.7 5 11 0.11 95 3.2 3.2 2 24 307 329 307 332 0.90 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF596-202 - 504 6.7e-12 45.1 100.7 6 11 0.066 59 3.8 8.9 2 24 335 357 335 360 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF596-202 - 504 6.7e-12 45.1 100.7 7 11 0.032 29 4.8 0.3 2 12 363 373 363 382 0.92 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF596-202 - 504 6.7e-12 45.1 100.7 8 11 7e-05 0.063 13.3 1.1 2 24 391 413 391 416 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF596-202 - 504 6.7e-12 45.1 100.7 9 11 0.00072 0.65 10.1 3.0 2 24 419 441 419 444 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF596-202 - 504 6.7e-12 45.1 100.7 10 11 4.1e-05 0.037 14.0 0.4 2 24 447 469 447 472 0.91 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF596-202 - 504 6.7e-12 45.1 100.7 11 11 4.6e-06 0.0041 17.1 1.4 2 26 475 499 475 500 0.95 C2H2-type zinc finger # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF596-202.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF596-202.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF596-202.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF596-202.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF596-202.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:10:26 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZNF596-203 - 504 9e-86 278.8 102.4 1 14 0.047 43 4.8 0.0 6 17 102 113 102 115 0.89 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF596-203 - 504 9e-86 278.8 102.4 2 14 7.7 6.9e+03 -2.2 0.1 2 11 154 163 153 167 0.78 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF596-203 - 504 9e-86 278.8 102.4 3 14 0.00015 0.14 12.7 0.3 2 25 182 205 181 206 0.87 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF596-203 - 504 9e-86 278.8 102.4 4 14 1.2e-09 1e-06 28.8 3.0 1 26 209 234 209 234 0.98 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF596-203 - 504 9e-86 278.8 102.4 5 14 1.2e-10 1.1e-07 31.9 2.1 1 25 237 261 237 262 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF596-203 - 504 9e-86 278.8 102.4 6 14 5.4e-06 0.0048 17.3 1.4 1 26 265 290 265 290 0.97 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF596-203 - 504 9e-86 278.8 102.4 7 14 9.2e-09 8.2e-06 26.0 0.3 1 25 293 317 293 318 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF596-203 - 504 9e-86 278.8 102.4 8 14 3.2e-11 2.8e-08 33.8 3.6 2 26 322 346 321 346 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF596-203 - 504 9e-86 278.8 102.4 9 14 1.4e-08 1.3e-05 25.4 3.6 1 25 349 373 349 374 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF596-203 - 504 9e-86 278.8 102.4 10 14 2.3e-12 2.1e-09 37.4 1.3 2 25 378 401 377 402 0.97 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF596-203 - 504 9e-86 278.8 102.4 11 14 3.6e-13 3.3e-10 39.9 3.3 1 26 405 430 405 430 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF596-203 - 504 9e-86 278.8 102.4 12 14 1e-12 9.2e-10 38.5 0.5 2 25 434 457 433 458 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF596-203 - 504 9e-86 278.8 102.4 13 14 1.9e-12 1.7e-09 37.7 0.9 1 25 461 485 461 486 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF596-203 - 504 9e-86 278.8 102.4 14 14 0.012 10 6.7 0.6 1 12 489 500 489 501 0.92 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZNF596-203 - 504 3.3e-54 178.4 116.3 1 13 0.45 4e+02 1.8 0.0 7 23 145 161 145 161 0.92 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF596-203 - 504 3.3e-54 178.4 116.3 2 13 7.8 7e+03 -2.1 0.0 8 23 174 189 173 189 0.79 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF596-203 - 504 3.3e-54 178.4 116.3 3 13 5.3e-08 4.7e-05 23.6 0.7 2 23 196 217 195 217 0.95 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF596-203 - 504 3.3e-54 178.4 116.3 4 13 2.9e-06 0.0026 18.1 7.7 3 23 225 245 225 245 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF596-203 - 504 3.3e-54 178.4 116.3 5 13 1.2e-07 0.00011 22.4 1.6 3 23 253 273 251 273 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF596-203 - 504 3.3e-54 178.4 116.3 6 13 8.2e-07 0.00074 19.8 6.6 3 23 281 301 280 301 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF596-203 - 504 3.3e-54 178.4 116.3 7 13 7.3e-06 0.0066 16.9 2.2 3 23 309 329 307 329 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF596-203 - 504 3.3e-54 178.4 116.3 8 13 1e-06 0.00092 19.5 8.9 1 23 335 357 335 357 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF596-203 - 504 3.3e-54 178.4 116.3 9 13 4.2e-06 0.0037 17.6 1.3 3 23 365 385 365 385 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF596-203 - 504 3.3e-54 178.4 116.3 10 13 2.9e-09 2.6e-06 27.5 1.4 1 23 391 413 391 413 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF596-203 - 504 3.3e-54 178.4 116.3 11 13 1.2e-07 0.00011 22.5 3.8 1 23 419 441 419 441 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF596-203 - 504 3.3e-54 178.4 116.3 12 13 5.5e-09 4.9e-06 26.7 1.2 1 23 447 469 447 469 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF596-203 - 504 3.3e-54 178.4 116.3 13 13 6e-08 5.4e-05 23.4 1.0 1 23 475 497 475 497 0.99 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZNF596-203 - 504 3.5e-34 114.5 106.7 1 12 1.3 1.1e+03 0.9 0.1 7 23 145 161 145 162 0.88 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF596-203 - 504 3.5e-34 114.5 106.7 2 12 4.1e-06 0.0037 18.0 0.5 2 23 196 217 195 218 0.89 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF596-203 - 504 3.5e-34 114.5 106.7 3 12 0.00051 0.45 11.5 6.9 3 23 225 245 223 246 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF596-203 - 504 3.5e-34 114.5 106.7 4 12 2.8e-05 0.025 15.4 1.1 2 23 252 273 251 274 0.89 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF596-203 - 504 3.5e-34 114.5 106.7 5 12 7.1e-05 0.064 14.1 4.8 2 23 280 301 279 302 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF596-203 - 504 3.5e-34 114.5 106.7 6 12 3.6e-05 0.032 15.0 2.1 2 23 308 329 307 330 0.89 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF596-203 - 504 3.5e-34 114.5 106.7 7 12 0.00013 0.12 13.3 7.7 1 23 335 357 335 358 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF596-203 - 504 3.5e-34 114.5 106.7 8 12 0.00021 0.18 12.7 1.8 3 23 365 385 363 386 0.88 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF596-203 - 504 3.5e-34 114.5 106.7 9 12 3.3e-07 0.0003 21.4 1.2 1 23 391 413 391 414 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF596-203 - 504 3.5e-34 114.5 106.7 10 12 2.5e-05 0.022 15.5 3.0 1 23 419 441 419 442 0.86 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF596-203 - 504 3.5e-34 114.5 106.7 11 12 2.5e-05 0.022 15.6 0.7 1 23 447 469 447 470 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF596-203 - 504 3.5e-34 114.5 106.7 12 12 1.4e-06 0.0013 19.4 0.9 1 23 475 497 475 498 0.96 C2H2-type zinc finger KRAB PF01352.27 42 ZNF596-203 - 504 2e-21 75.4 0.1 1 1 4.3e-24 3.9e-21 74.4 0.1 1 42 6 47 6 47 0.98 KRAB box zf-C2H2_jaz PF12171.8 27 ZNF596-203 - 504 1.5e-18 66.6 69.2 1 11 0.00037 0.33 11.3 0.0 3 21 196 214 194 214 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF596-203 - 504 1.5e-18 66.6 69.2 2 11 0.17 1.5e+02 2.8 3.5 4 24 225 245 223 245 0.95 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF596-203 - 504 1.5e-18 66.6 69.2 3 11 0.00091 0.81 10.0 0.0 4 21 253 270 250 270 0.95 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF596-203 - 504 1.5e-18 66.6 69.2 4 11 0.03 26 5.2 2.1 4 24 281 301 280 302 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF596-203 - 504 1.5e-18 66.6 69.2 5 11 0.0019 1.7 9.0 0.4 4 24 309 329 306 330 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF596-203 - 504 1.5e-18 66.6 69.2 6 11 0.0066 5.9 7.3 6.5 2 24 335 357 334 363 0.90 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF596-203 - 504 1.5e-18 66.6 69.2 7 11 0.0012 1 9.7 0.1 4 22 365 383 362 383 0.95 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF596-203 - 504 1.5e-18 66.6 69.2 8 11 7.8e-05 0.07 13.4 0.1 2 24 391 413 390 413 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF596-203 - 504 1.5e-18 66.6 69.2 9 11 5.4e-06 0.0048 17.1 0.3 2 24 419 441 418 441 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF596-203 - 504 1.5e-18 66.6 69.2 10 11 0.00075 0.68 10.3 0.1 2 21 447 466 446 467 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF596-203 - 504 1.5e-18 66.6 69.2 11 11 0.0017 1.5 9.2 0.3 2 24 475 497 474 500 0.90 Zinc-finger double-stranded RNA-binding zf-C2H2_6 PF13912.6 27 ZNF596-203 - 504 6.7e-12 45.1 100.7 1 11 0.00085 0.76 9.8 0.2 3 20 196 213 196 217 0.90 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF596-203 - 504 6.7e-12 45.1 100.7 2 11 0.016 14 5.8 7.4 2 24 223 245 223 248 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF596-203 - 504 6.7e-12 45.1 100.7 3 11 0.0032 2.9 8.0 0.9 2 20 251 269 251 273 0.91 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF596-203 - 504 6.7e-12 45.1 100.7 4 11 0.0044 3.9 7.6 4.7 3 25 280 302 280 303 0.95 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF596-203 - 504 6.7e-12 45.1 100.7 5 11 0.11 95 3.2 3.2 2 24 307 329 307 332 0.90 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF596-203 - 504 6.7e-12 45.1 100.7 6 11 0.066 59 3.8 8.9 2 24 335 357 335 360 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF596-203 - 504 6.7e-12 45.1 100.7 7 11 0.032 29 4.8 0.3 2 12 363 373 363 382 0.92 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF596-203 - 504 6.7e-12 45.1 100.7 8 11 7e-05 0.063 13.3 1.1 2 24 391 413 391 416 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF596-203 - 504 6.7e-12 45.1 100.7 9 11 0.00072 0.65 10.1 3.0 2 24 419 441 419 444 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF596-203 - 504 6.7e-12 45.1 100.7 10 11 4.1e-05 0.037 14.0 0.4 2 24 447 469 447 472 0.91 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF596-203 - 504 6.7e-12 45.1 100.7 11 11 4.6e-06 0.0041 17.1 1.4 2 26 475 499 475 500 0.95 C2H2-type zinc finger # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF596-203.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF596-203.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF596-203.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF596-203.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF596-203.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:10:27 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF596-204.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF596-204.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF596-204.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF596-204.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF596-204.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:10:27 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF596-205.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF596-205.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF596-205.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF596-205.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF596-205.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:10:27 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF596-206.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF596-206.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF596-206.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF596-206.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF596-206.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:10:28 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF596-207.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF596-207.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF596-207.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF596-207.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF596-207.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:10:28 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF596-208.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF596-208.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF596-208.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF596-208.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF596-208.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:10:28 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF596-209.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF596-209.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF596-209.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF596-209.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF596-209.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:10:29 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- KRAB PF01352.27 42 ZNF596-210 - 77 5.2e-23 80.4 0.3 1 2 7.6e-27 1.4e-22 79.1 0.1 1 42 6 47 6 47 0.98 KRAB box KRAB PF01352.27 42 ZNF596-210 - 77 5.2e-23 80.4 0.3 2 2 0.093 1.7e+03 -1.2 0.0 24 34 48 58 48 63 0.73 KRAB box # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF596-210.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF596-210.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF596-210.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF596-210.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF596-210.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:10:29 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF596-211.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF596-211.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF596-211.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF596-211.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF596-211.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:10:29 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- KRAB PF01352.27 42 ZNF596-212 - 67 7.5e-23 79.9 0.1 1 1 5.1e-27 9.2e-23 79.6 0.1 1 42 6 47 6 47 0.98 KRAB box # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF596-212.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF596-212.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF596-212.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF596-212.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF596-212.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:10:30 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- KRAB PF01352.27 42 ZNF596-213 - 169 2.9e-22 78.0 0.2 1 2 8.4e-26 7.5e-22 76.7 0.1 1 42 6 47 6 47 0.98 KRAB box KRAB PF01352.27 42 ZNF596-213 - 169 2.9e-22 78.0 0.2 2 2 0.59 5.3e+03 -2.8 0.0 24 34 48 58 48 62 0.72 KRAB box # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF596-213.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF596-213.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF596-213.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF596-213.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF596-213.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:10:30 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZNF597-201 - 424 1.6e-26 91.5 70.3 1 9 0.002 1.8 9.1 0.3 13 25 154 166 151 167 0.85 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF597-201 - 424 1.6e-26 91.5 70.3 2 9 6.5e-07 0.00058 20.2 2.0 2 26 171 195 170 195 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF597-201 - 424 1.6e-26 91.5 70.3 3 9 1.5e-10 1.4e-07 31.6 1.0 1 25 198 222 198 223 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF597-201 - 424 1.6e-26 91.5 70.3 4 9 1.7e-08 1.5e-05 25.2 1.2 1 24 226 249 226 249 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF597-201 - 424 1.6e-26 91.5 70.3 5 9 9.1e-05 0.081 13.4 0.1 2 25 255 278 254 279 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF597-201 - 424 1.6e-26 91.5 70.3 6 9 0.016 14 6.3 3.4 13 24 339 350 335 352 0.89 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF597-201 - 424 1.6e-26 91.5 70.3 7 9 2.2e-06 0.002 18.5 0.9 2 25 356 379 355 379 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF597-201 - 424 1.6e-26 91.5 70.3 8 9 0.00011 0.097 13.1 2.3 5 26 387 408 384 408 0.87 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF597-201 - 424 1.6e-26 91.5 70.3 9 9 7.1 6.3e+03 -2.1 1.5 2 11 412 421 411 423 0.74 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZNF597-201 - 424 5e-25 86.5 66.2 1 8 2.1e-07 0.00018 21.7 1.4 1 23 156 178 156 178 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF597-201 - 424 5e-25 86.5 66.2 2 8 4.2e-08 3.7e-05 23.9 3.3 1 23 184 206 184 206 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF597-201 - 424 5e-25 86.5 66.2 3 8 1e-06 0.00091 19.6 6.1 1 23 212 234 212 234 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF597-201 - 424 5e-25 86.5 66.2 4 8 0.00092 0.82 10.2 0.1 1 23 240 262 240 262 0.94 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF597-201 - 424 5e-25 86.5 66.2 5 8 0.46 4.2e+02 1.7 0.0 5 16 272 283 271 285 0.86 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF597-201 - 424 5e-25 86.5 66.2 6 8 1e-05 0.0091 16.4 0.6 2 23 342 363 341 363 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF597-201 - 424 5e-25 86.5 66.2 7 8 0.016 14 6.3 2.9 1 23 369 391 369 391 0.95 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF597-201 - 424 5e-25 86.5 66.2 8 8 1.2e-07 0.00011 22.4 3.9 1 23 397 419 397 419 0.99 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZNF597-201 - 424 7.9e-18 63.6 56.9 1 8 3.7e-05 0.033 15.0 1.3 1 23 156 178 156 179 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF597-201 - 424 7.9e-18 63.6 56.9 2 8 0.00033 0.29 12.1 1.6 1 23 184 206 184 207 0.91 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF597-201 - 424 7.9e-18 63.6 56.9 3 8 2.7e-05 0.024 15.4 4.5 1 23 212 234 212 235 0.97 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF597-201 - 424 7.9e-18 63.6 56.9 4 8 0.00055 0.49 11.4 0.1 1 23 240 262 240 263 0.86 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF597-201 - 424 7.9e-18 63.6 56.9 5 8 8.2 7.3e+03 -1.6 0.0 4 14 271 281 268 284 0.72 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF597-201 - 424 7.9e-18 63.6 56.9 6 8 7.1e-05 0.064 14.1 0.7 2 23 342 363 341 364 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF597-201 - 424 7.9e-18 63.6 56.9 7 8 0.018 16 6.6 3.3 1 23 369 391 369 392 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF597-201 - 424 7.9e-18 63.6 56.9 8 8 3.3e-07 0.0003 21.4 2.0 1 23 397 419 397 420 0.98 C2H2-type zinc finger KRAB PF01352.27 42 ZNF597-201 - 424 1.9e-11 43.4 0.0 1 1 3.7e-14 3.3e-11 42.6 0.0 2 42 14 54 13 54 0.91 KRAB box # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF597-201.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF597-201.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF597-201.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF597-201.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF597-201.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:10:30 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZNF600-201 - 722 1.2e-128 414.3 174.0 1 20 1.8 2.2e+03 -0.6 0.2 12 25 159 172 157 173 0.84 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF600-201 - 722 1.2e-128 414.3 174.0 2 20 1.2e-06 0.0014 19.0 0.8 2 26 177 201 177 201 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF600-201 - 722 1.2e-128 414.3 174.0 3 20 6.4e-08 7.6e-05 23.0 8.5 5 25 208 228 204 229 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF600-201 - 722 1.2e-128 414.3 174.0 4 20 9.7e-05 0.12 12.9 2.2 5 25 236 256 232 257 0.90 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF600-201 - 722 1.2e-128 414.3 174.0 5 20 7.8e-11 9.3e-08 32.2 0.1 1 25 260 284 260 285 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF600-201 - 722 1.2e-128 414.3 174.0 6 20 8.1e-13 9.6e-10 38.4 0.7 1 25 288 312 288 313 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF600-201 - 722 1.2e-128 414.3 174.0 7 20 2.6e-10 3.1e-07 30.5 1.1 2 25 317 340 316 340 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF600-201 - 722 1.2e-128 414.3 174.0 8 20 2.1e-10 2.6e-07 30.8 2.7 2 26 345 369 344 369 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF600-201 - 722 1.2e-128 414.3 174.0 9 20 9.7e-07 0.0012 19.2 2.7 5 25 376 396 372 396 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF600-201 - 722 1.2e-128 414.3 174.0 10 20 2.1e-10 2.5e-07 30.8 1.0 1 25 400 424 400 425 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF600-201 - 722 1.2e-128 414.3 174.0 11 20 3.7e-06 0.0044 17.4 0.3 5 25 432 452 428 453 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF600-201 - 722 1.2e-128 414.3 174.0 12 20 1.3e-10 1.6e-07 31.4 2.0 2 25 457 480 456 481 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF600-201 - 722 1.2e-128 414.3 174.0 13 20 7.3e-10 8.8e-07 29.1 2.0 2 24 485 507 484 508 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF600-201 - 722 1.2e-128 414.3 174.0 14 20 2.7e-10 3.2e-07 30.5 1.2 2 25 513 536 512 537 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF600-201 - 722 1.2e-128 414.3 174.0 15 20 7.2e-08 8.6e-05 22.8 6.0 5 26 544 565 543 565 0.97 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF600-201 - 722 1.2e-128 414.3 174.0 16 20 4.3e-10 5.1e-07 29.8 1.4 2 26 569 593 568 593 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF600-201 - 722 1.2e-128 414.3 174.0 17 20 7.5e-11 9e-08 32.2 0.7 2 25 597 620 596 621 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF600-201 - 722 1.2e-128 414.3 174.0 18 20 1.2e-07 0.00014 22.1 0.8 2 25 625 648 624 649 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF600-201 - 722 1.2e-128 414.3 174.0 19 20 1.6e-11 2e-08 34.3 4.3 1 25 652 676 652 677 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF600-201 - 722 1.2e-128 414.3 174.0 20 20 1.3e-10 1.5e-07 31.5 2.5 1 25 680 704 680 705 0.95 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZNF600-201 - 722 1e-80 261.9 188.7 1 20 0.28 3.4e+02 2.0 0.3 7 20 168 181 162 184 0.80 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF600-201 - 722 1e-80 261.9 188.7 2 20 0.48 5.8e+02 1.3 9.2 1 17 190 206 190 212 0.92 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF600-201 - 722 1e-80 261.9 188.7 3 20 2e-06 0.0024 18.2 3.6 1 23 218 240 218 240 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF600-201 - 722 1e-80 261.9 188.7 4 20 2.5e-06 0.003 17.9 0.1 1 23 246 268 246 268 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF600-201 - 722 1e-80 261.9 188.7 5 20 4.1e-10 4.8e-07 29.9 0.7 1 23 274 296 274 296 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF600-201 - 722 1e-80 261.9 188.7 6 20 1.9e-09 2.3e-06 27.8 1.3 1 23 302 324 302 324 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF600-201 - 722 1e-80 261.9 188.7 7 20 2.3e-06 0.0027 18.1 0.6 1 23 330 352 330 352 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF600-201 - 722 1e-80 261.9 188.7 8 20 1.3e-05 0.016 15.7 8.1 1 23 358 380 358 380 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF600-201 - 722 1e-80 261.9 188.7 9 20 4e-07 0.00048 20.4 1.3 1 23 386 408 386 408 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF600-201 - 722 1e-80 261.9 188.7 10 20 1.5e-07 0.00018 21.8 0.3 1 23 414 436 414 436 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF600-201 - 722 1e-80 261.9 188.7 11 20 0.26 3.1e+02 2.1 0.1 5 23 446 464 445 464 0.90 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF600-201 - 722 1e-80 261.9 188.7 12 20 5e-05 0.06 13.8 4.4 1 23 470 492 470 492 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF600-201 - 722 1e-80 261.9 188.7 13 20 3.6e-07 0.00043 20.6 2.5 1 23 498 520 498 520 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF600-201 - 722 1e-80 261.9 188.7 14 20 0.00022 0.27 11.8 8.4 1 23 526 548 526 548 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF600-201 - 722 1e-80 261.9 188.7 15 20 1.3e-07 0.00015 22.0 5.1 1 23 554 576 554 576 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF600-201 - 722 1e-80 261.9 188.7 16 20 9.4e-09 1.1e-05 25.6 0.9 1 23 582 604 582 604 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF600-201 - 722 1e-80 261.9 188.7 17 20 1.2e-08 1.4e-05 25.2 1.6 1 23 610 632 610 632 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF600-201 - 722 1e-80 261.9 188.7 18 20 1.6e-09 1.9e-06 28.0 5.0 1 23 638 660 638 660 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF600-201 - 722 1e-80 261.9 188.7 19 20 3.7e-06 0.0044 17.4 2.2 1 23 666 688 666 688 0.94 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF600-201 - 722 1e-80 261.9 188.7 20 20 1.2e-08 1.4e-05 25.3 1.0 1 23 694 716 694 716 0.98 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZNF600-201 - 722 4.1e-40 133.0 176.3 1 20 0.1 1.2e+02 3.9 0.4 2 23 163 184 162 185 0.78 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF600-201 - 722 4.1e-40 133.0 176.3 2 20 0.91 1.1e+03 1.0 9.7 1 21 190 210 190 212 0.81 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF600-201 - 722 4.1e-40 133.0 176.3 3 20 8.1e-05 0.096 13.6 3.3 1 23 218 240 218 241 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF600-201 - 722 4.1e-40 133.0 176.3 4 20 0.0013 1.5 9.8 0.2 1 23 246 268 246 269 0.91 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF600-201 - 722 4.1e-40 133.0 176.3 5 20 3.1e-05 0.037 14.9 0.5 1 23 274 296 274 297 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF600-201 - 722 4.1e-40 133.0 176.3 6 20 4.8e-06 0.0057 17.4 1.1 1 23 302 324 302 325 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF600-201 - 722 4.1e-40 133.0 176.3 7 20 0.00034 0.41 11.6 0.6 1 23 330 352 330 353 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF600-201 - 722 4.1e-40 133.0 176.3 8 20 0.0011 1.3 10.1 5.9 1 23 358 380 358 381 0.88 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF600-201 - 722 4.1e-40 133.0 176.3 9 20 0.002 2.4 9.2 1.4 1 23 386 408 386 409 0.82 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF600-201 - 722 4.1e-40 133.0 176.3 10 20 7.6e-05 0.09 13.7 0.2 1 23 414 436 414 437 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF600-201 - 722 4.1e-40 133.0 176.3 11 20 0.012 15 6.8 0.2 5 23 446 464 445 465 0.89 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF600-201 - 722 4.1e-40 133.0 176.3 12 20 0.00037 0.44 11.5 4.0 1 23 470 492 470 493 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF600-201 - 722 4.1e-40 133.0 176.3 13 20 0.00023 0.27 12.2 1.9 1 23 498 520 498 521 0.89 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF600-201 - 722 4.1e-40 133.0 176.3 14 20 0.0018 2.2 9.3 7.0 1 23 526 548 526 549 0.86 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF600-201 - 722 4.1e-40 133.0 176.3 15 20 5.3e-05 0.064 14.1 4.0 1 23 554 576 554 577 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF600-201 - 722 4.1e-40 133.0 176.3 16 20 6.1e-05 0.073 13.9 0.5 1 23 582 604 582 605 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF600-201 - 722 4.1e-40 133.0 176.3 17 20 8.9e-05 0.11 13.4 0.9 1 23 610 632 610 633 0.90 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF600-201 - 722 4.1e-40 133.0 176.3 18 20 4.3e-06 0.0051 17.5 3.0 1 23 638 660 638 661 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF600-201 - 722 4.1e-40 133.0 176.3 19 20 6.2e-05 0.074 13.9 1.4 1 20 666 685 666 689 0.89 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF600-201 - 722 4.1e-40 133.0 176.3 20 20 1.3e-05 0.016 16.0 0.7 1 23 694 716 694 717 0.91 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF600-201 - 722 5.3e-24 83.7 158.6 1 19 0.029 34 4.6 9.9 2 24 190 212 189 215 0.92 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF600-201 - 722 5.3e-24 83.7 158.6 2 19 3.7e-05 0.045 13.8 2.8 2 24 218 240 218 243 0.92 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF600-201 - 722 5.3e-24 83.7 158.6 3 19 0.0012 1.5 9.0 0.3 2 22 246 266 245 270 0.82 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF600-201 - 722 5.3e-24 83.7 158.6 4 19 1.6e-05 0.019 14.9 0.3 2 24 274 296 274 299 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF600-201 - 722 5.3e-24 83.7 158.6 5 19 8.6e-05 0.1 12.6 1.0 2 24 302 324 302 327 0.92 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF600-201 - 722 5.3e-24 83.7 158.6 6 19 0.041 49 4.1 0.2 2 11 330 339 330 352 0.89 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF600-201 - 722 5.3e-24 83.7 158.6 7 19 0.00028 0.34 11.0 0.9 2 12 358 368 357 373 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF600-201 - 722 5.3e-24 83.7 158.6 8 19 0.001 1.2 9.2 0.4 2 11 386 395 385 406 0.86 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF600-201 - 722 5.3e-24 83.7 158.6 9 19 0.00033 0.4 10.7 0.3 2 12 414 424 414 436 0.86 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF600-201 - 722 5.3e-24 83.7 158.6 10 19 0.019 23 5.2 0.1 6 24 446 464 445 467 0.90 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF600-201 - 722 5.3e-24 83.7 158.6 11 19 0.006 7.1 6.8 1.9 2 11 470 479 470 492 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF600-201 - 722 5.3e-24 83.7 158.6 12 19 0.00036 0.43 10.7 0.5 2 12 498 508 498 521 0.92 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF600-201 - 722 5.3e-24 83.7 158.6 13 19 0.0012 1.4 9.0 2.0 2 12 526 536 526 537 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF600-201 - 722 5.3e-24 83.7 158.6 14 19 0.00062 0.75 9.9 2.1 2 20 554 572 554 578 0.76 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF600-201 - 722 5.3e-24 83.7 158.6 15 19 0.0011 1.4 9.0 0.3 2 12 582 592 581 602 0.92 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF600-201 - 722 5.3e-24 83.7 158.6 16 19 0.0009 1.1 9.4 0.6 2 13 610 621 610 632 0.87 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF600-201 - 722 5.3e-24 83.7 158.6 17 19 0.099 1.2e+02 2.9 7.1 2 14 638 650 637 661 0.73 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF600-201 - 722 5.3e-24 83.7 158.6 18 19 0.00096 1.1 9.3 3.9 2 13 666 677 666 685 0.92 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF600-201 - 722 5.3e-24 83.7 158.6 19 19 0.00019 0.23 11.5 2.0 2 21 694 713 694 716 0.87 C2H2-type zinc finger BolA PF01722.18 76 ZNF600-201 - 722 5.2e-14 52.3 39.7 1 11 1.2 1.5e+03 -0.4 0.0 18 48 179 207 148 211 0.66 BolA-like protein BolA PF01722.18 76 ZNF600-201 - 722 5.2e-14 52.3 39.7 2 11 0.18 2.2e+02 2.2 0.1 25 58 212 245 199 250 0.84 BolA-like protein BolA PF01722.18 76 ZNF600-201 - 722 5.2e-14 52.3 39.7 3 11 0.00091 1.1 9.6 0.1 23 53 266 296 256 299 0.84 BolA-like protein BolA PF01722.18 76 ZNF600-201 - 722 5.2e-14 52.3 39.7 4 11 0.00011 0.13 12.5 0.1 15 53 318 352 309 354 0.83 BolA-like protein BolA PF01722.18 76 ZNF600-201 - 722 5.2e-14 52.3 39.7 5 11 0.00061 0.73 10.2 0.8 16 53 371 408 366 410 0.85 BolA-like protein BolA PF01722.18 76 ZNF600-201 - 722 5.2e-14 52.3 39.7 6 11 0.017 21 5.5 0.0 24 53 463 492 452 494 0.83 BolA-like protein BolA PF01722.18 76 ZNF600-201 - 722 5.2e-14 52.3 39.7 7 11 0.028 33 4.9 0.2 20 53 487 520 481 530 0.85 BolA-like protein BolA PF01722.18 76 ZNF600-201 - 722 5.2e-14 52.3 39.7 8 11 0.039 46 4.4 0.6 17 52 512 547 504 550 0.83 BolA-like protein BolA PF01722.18 76 ZNF600-201 - 722 5.2e-14 52.3 39.7 9 11 0.00023 0.27 11.5 0.5 19 55 571 606 557 610 0.82 BolA-like protein BolA PF01722.18 76 ZNF600-201 - 722 5.2e-14 52.3 39.7 10 11 0.00055 0.66 10.3 1.1 17 53 624 660 618 661 0.82 BolA-like protein BolA PF01722.18 76 ZNF600-201 - 722 5.2e-14 52.3 39.7 11 11 0.018 21 5.5 0.1 15 54 678 717 664 720 0.84 BolA-like protein zf-C2H2_jaz PF12171.8 27 ZNF600-201 - 722 1.8e-12 47.2 118.2 1 19 1 1.2e+03 -0.1 5.9 1 17 189 205 189 210 0.83 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF600-201 - 722 1.8e-12 47.2 118.2 2 19 0.2 2.4e+02 2.2 0.4 2 13 218 229 217 238 0.80 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF600-201 - 722 1.8e-12 47.2 118.2 3 19 0.1 1.2e+02 3.1 0.2 2 20 246 264 245 266 0.86 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF600-201 - 722 1.8e-12 47.2 118.2 4 19 0.00095 1.1 9.6 0.5 2 21 274 293 273 294 0.91 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF600-201 - 722 1.8e-12 47.2 118.2 5 19 3.3e-06 0.0039 17.4 0.2 2 22 302 322 301 322 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF600-201 - 722 1.8e-12 47.2 118.2 6 19 0.075 89 3.5 0.2 2 21 330 349 329 350 0.80 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF600-201 - 722 1.8e-12 47.2 118.2 7 19 0.072 86 3.6 1.8 2 17 358 373 357 376 0.86 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF600-201 - 722 1.8e-12 47.2 118.2 8 19 0.0039 4.7 7.6 0.4 2 20 386 404 385 406 0.76 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF600-201 - 722 1.8e-12 47.2 118.2 9 19 0.053 63 4.0 0.1 2 21 414 433 413 434 0.82 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF600-201 - 722 1.8e-12 47.2 118.2 10 19 1.4 1.7e+03 -0.5 0.1 6 20 446 460 445 461 0.81 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF600-201 - 722 1.8e-12 47.2 118.2 11 19 0.014 16 5.9 2.3 2 20 470 488 469 490 0.78 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF600-201 - 722 1.8e-12 47.2 118.2 12 19 0.058 69 3.9 0.1 2 12 498 508 497 518 0.85 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF600-201 - 722 1.8e-12 47.2 118.2 13 19 0.13 1.6e+02 2.8 1.8 2 12 526 536 525 544 0.90 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF600-201 - 722 1.8e-12 47.2 118.2 14 19 0.077 92 3.5 0.2 2 12 554 564 553 573 0.88 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF600-201 - 722 1.8e-12 47.2 118.2 15 19 0.0022 2.7 8.4 0.2 2 20 582 600 581 602 0.86 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF600-201 - 722 1.8e-12 47.2 118.2 16 19 0.024 29 5.1 0.4 2 20 610 628 609 628 0.91 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF600-201 - 722 1.8e-12 47.2 118.2 17 19 2.8e-05 0.034 14.5 0.7 2 21 638 657 637 658 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF600-201 - 722 1.8e-12 47.2 118.2 18 19 6.7e-07 0.0008 19.6 0.4 2 20 666 684 665 685 0.95 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF600-201 - 722 1.8e-12 47.2 118.2 19 19 0.009 11 6.5 0.4 2 20 694 712 693 714 0.88 Zinc-finger double-stranded RNA-binding zf-met PF12874.7 25 ZNF600-201 - 722 7.2e-12 45.3 138.5 1 19 0.0057 6.8 7.2 5.0 1 21 190 210 190 210 0.93 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF600-201 - 722 7.2e-12 45.3 138.5 2 19 0.34 4e+02 1.6 1.7 1 19 218 236 218 238 0.89 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF600-201 - 722 7.2e-12 45.3 138.5 3 19 4.7 5.7e+03 -2.1 0.2 2 19 247 264 246 267 0.77 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF600-201 - 722 7.2e-12 45.3 138.5 4 19 0.0032 3.9 8.0 0.7 1 20 274 293 274 297 0.90 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF600-201 - 722 7.2e-12 45.3 138.5 5 19 4.6e-06 0.0055 17.1 0.7 1 21 302 322 302 325 0.92 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF600-201 - 722 7.2e-12 45.3 138.5 6 19 0.0021 2.6 8.6 0.6 1 21 330 350 330 353 0.89 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF600-201 - 722 7.2e-12 45.3 138.5 7 19 0.03 36 4.9 3.7 1 19 358 376 358 376 0.94 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF600-201 - 722 7.2e-12 45.3 138.5 8 19 0.011 13 6.3 0.6 1 19 386 404 386 408 0.75 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF600-201 - 722 7.2e-12 45.3 138.5 9 19 0.15 1.8e+02 2.7 0.3 1 20 414 433 414 437 0.87 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF600-201 - 722 7.2e-12 45.3 138.5 10 19 0.26 3.1e+02 1.9 0.1 6 19 447 460 445 462 0.92 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF600-201 - 722 7.2e-12 45.3 138.5 11 19 0.00047 0.56 10.7 3.3 1 21 470 490 470 492 0.92 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF600-201 - 722 7.2e-12 45.3 138.5 12 19 0.11 1.4e+02 3.1 0.3 1 19 498 516 498 518 0.89 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF600-201 - 722 7.2e-12 45.3 138.5 13 19 0.17 2e+02 2.5 4.1 1 19 526 544 526 546 0.93 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF600-201 - 722 7.2e-12 45.3 138.5 14 19 0.072 85 3.7 0.2 1 15 554 568 554 572 0.86 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF600-201 - 722 7.2e-12 45.3 138.5 15 19 0.0012 1.4 9.4 0.3 1 21 582 602 582 605 0.91 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF600-201 - 722 7.2e-12 45.3 138.5 16 19 0.052 62 4.2 0.9 1 19 610 628 610 630 0.93 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF600-201 - 722 7.2e-12 45.3 138.5 17 19 7.4e-06 0.0088 16.4 0.9 1 19 638 656 638 660 0.93 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF600-201 - 722 7.2e-12 45.3 138.5 18 19 3.4e-07 0.0004 20.7 0.3 1 19 666 684 666 686 0.95 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF600-201 - 722 7.2e-12 45.3 138.5 19 19 0.28 3.4e+02 1.8 0.6 1 18 694 711 694 714 0.87 Zinc-finger of C2H2 type # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF600-201.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF600-201.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF600-201.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF600-201.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF600-201.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:10:31 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF600-202.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF600-202.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF600-202.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF600-202.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF600-202.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:10:31 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF600-203.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF600-203.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF600-203.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF600-203.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF600-203.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:10:32 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF600-204.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF600-204.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF600-204.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF600-204.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF600-204.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:10:32 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF600-205.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF600-205.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF600-205.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF600-205.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF600-205.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:10:32 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- KRAB PF01352.27 42 ZNF600-206 - 210 9.8e-22 76.3 0.1 1 1 8.9e-26 1.6e-21 75.7 0.1 2 41 24 63 23 64 0.95 KRAB box # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF600-206.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF600-206.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF600-206.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF600-206.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF600-206.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:10:33 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- KRAB PF01352.27 42 ZNF600-207 - 204 9.4e-22 76.4 0.1 1 1 8.5e-26 1.5e-21 75.7 0.1 2 41 24 63 23 64 0.95 KRAB box # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF600-207.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF600-207.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF600-207.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF600-207.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF600-207.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:10:33 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZNF600-208 - 791 9.7e-128 411.5 174.0 1 20 2.3 2.4e+03 -0.8 0.2 12 25 228 241 226 242 0.84 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF600-208 - 791 9.7e-128 411.5 174.0 2 20 1.5e-06 0.0015 18.8 0.8 2 26 246 270 246 270 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF600-208 - 791 9.7e-128 411.5 174.0 3 20 8e-08 8.5e-05 22.8 8.5 5 25 277 297 273 298 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF600-208 - 791 9.7e-128 411.5 174.0 4 20 0.00012 0.13 12.8 2.2 5 25 305 325 301 326 0.90 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF600-208 - 791 9.7e-128 411.5 174.0 5 20 9.8e-11 1e-07 32.0 0.1 1 25 329 353 329 354 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF600-208 - 791 9.7e-128 411.5 174.0 6 20 1e-12 1.1e-09 38.3 0.7 1 25 357 381 357 382 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF600-208 - 791 9.7e-128 411.5 174.0 7 20 3.3e-10 3.4e-07 30.4 1.1 2 25 386 409 385 409 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF600-208 - 791 9.7e-128 411.5 174.0 8 20 2.7e-10 2.8e-07 30.6 2.7 2 26 414 438 413 438 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF600-208 - 791 9.7e-128 411.5 174.0 9 20 1.2e-06 0.0013 19.1 2.7 5 25 445 465 441 465 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF600-208 - 791 9.7e-128 411.5 174.0 10 20 2.6e-10 2.8e-07 30.7 1.0 1 25 469 493 469 494 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF600-208 - 791 9.7e-128 411.5 174.0 11 20 4.6e-06 0.0049 17.2 0.3 5 25 501 521 497 522 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF600-208 - 791 9.7e-128 411.5 174.0 12 20 1.7e-10 1.8e-07 31.3 2.0 2 25 526 549 525 550 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF600-208 - 791 9.7e-128 411.5 174.0 13 20 9.3e-10 9.8e-07 28.9 2.0 2 24 554 576 553 577 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF600-208 - 791 9.7e-128 411.5 174.0 14 20 3.4e-10 3.6e-07 30.3 1.2 2 25 582 605 581 606 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF600-208 - 791 9.7e-128 411.5 174.0 15 20 9e-08 9.5e-05 22.7 6.0 5 26 613 634 612 634 0.97 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF600-208 - 791 9.7e-128 411.5 174.0 16 20 5.4e-10 5.7e-07 29.7 1.4 2 26 638 662 637 662 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF600-208 - 791 9.7e-128 411.5 174.0 17 20 9.4e-11 9.9e-08 32.1 0.7 2 25 666 689 665 690 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF600-208 - 791 9.7e-128 411.5 174.0 18 20 1.5e-07 0.00016 22.0 0.8 2 25 694 717 693 718 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF600-208 - 791 9.7e-128 411.5 174.0 19 20 2.1e-11 2.2e-08 34.2 4.3 1 25 721 745 721 746 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF600-208 - 791 9.7e-128 411.5 174.0 20 20 1.6e-10 1.7e-07 31.4 2.5 1 25 749 773 749 774 0.95 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZNF600-208 - 791 8.1e-80 259.1 188.7 1 20 0.36 3.8e+02 1.9 0.3 7 20 237 250 231 253 0.80 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF600-208 - 791 8.1e-80 259.1 188.7 2 20 0.61 6.4e+02 1.1 9.2 1 17 259 275 259 281 0.92 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF600-208 - 791 8.1e-80 259.1 188.7 3 20 2.5e-06 0.0026 18.1 3.6 1 23 287 309 287 309 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF600-208 - 791 8.1e-80 259.1 188.7 4 20 3.2e-06 0.0033 17.8 0.1 1 23 315 337 315 337 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF600-208 - 791 8.1e-80 259.1 188.7 5 20 5.1e-10 5.4e-07 29.7 0.7 1 23 343 365 343 365 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF600-208 - 791 8.1e-80 259.1 188.7 6 20 2.4e-09 2.5e-06 27.6 1.3 1 23 371 393 371 393 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF600-208 - 791 8.1e-80 259.1 188.7 7 20 2.8e-06 0.003 17.9 0.6 1 23 399 421 399 421 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF600-208 - 791 8.1e-80 259.1 188.7 8 20 1.7e-05 0.017 15.5 8.1 1 23 427 449 427 449 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF600-208 - 791 8.1e-80 259.1 188.7 9 20 5.1e-07 0.00054 20.3 1.3 1 23 455 477 455 477 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF600-208 - 791 8.1e-80 259.1 188.7 10 20 1.9e-07 0.0002 21.6 0.3 1 23 483 505 483 505 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF600-208 - 791 8.1e-80 259.1 188.7 11 20 0.33 3.5e+02 2.0 0.1 5 23 515 533 514 533 0.90 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF600-208 - 791 8.1e-80 259.1 188.7 12 20 6.3e-05 0.066 13.7 4.4 1 23 539 561 539 561 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF600-208 - 791 8.1e-80 259.1 188.7 13 20 4.5e-07 0.00048 20.4 2.5 1 23 567 589 567 589 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF600-208 - 791 8.1e-80 259.1 188.7 14 20 0.00028 0.29 11.7 8.4 1 23 595 617 595 617 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF600-208 - 791 8.1e-80 259.1 188.7 15 20 1.6e-07 0.00017 21.9 5.1 1 23 623 645 623 645 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF600-208 - 791 8.1e-80 259.1 188.7 16 20 1.2e-08 1.3e-05 25.4 0.9 1 23 651 673 651 673 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF600-208 - 791 8.1e-80 259.1 188.7 17 20 1.5e-08 1.6e-05 25.1 1.6 1 23 679 701 679 701 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF600-208 - 791 8.1e-80 259.1 188.7 18 20 2e-09 2.1e-06 27.8 5.0 1 23 707 729 707 729 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF600-208 - 791 8.1e-80 259.1 188.7 19 20 4.6e-06 0.0049 17.3 2.2 1 23 735 757 735 757 0.94 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF600-208 - 791 8.1e-80 259.1 188.7 20 20 1.5e-08 1.5e-05 25.1 1.0 1 23 763 785 763 785 0.98 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZNF600-208 - 791 3.2e-39 130.2 176.3 1 20 0.13 1.3e+02 3.8 0.4 2 23 232 253 231 254 0.78 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF600-208 - 791 3.2e-39 130.2 176.3 2 20 1.1 1.2e+03 0.8 9.7 1 21 259 279 259 281 0.81 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF600-208 - 791 3.2e-39 130.2 176.3 3 20 0.0001 0.11 13.4 3.3 1 23 287 309 287 310 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF600-208 - 791 3.2e-39 130.2 176.3 4 20 0.0016 1.7 9.7 0.2 1 23 315 337 315 338 0.91 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF600-208 - 791 3.2e-39 130.2 176.3 5 20 3.9e-05 0.041 14.7 0.5 1 23 343 365 343 366 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF600-208 - 791 3.2e-39 130.2 176.3 6 20 6e-06 0.0064 17.2 1.1 1 23 371 393 371 394 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF600-208 - 791 3.2e-39 130.2 176.3 7 20 0.00043 0.46 11.5 0.6 1 23 399 421 399 422 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF600-208 - 791 3.2e-39 130.2 176.3 8 20 0.0014 1.4 9.9 5.9 1 23 427 449 427 450 0.88 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF600-208 - 791 3.2e-39 130.2 176.3 9 20 0.0026 2.7 9.1 1.4 1 23 455 477 455 478 0.82 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF600-208 - 791 3.2e-39 130.2 176.3 10 20 9.5e-05 0.1 13.5 0.2 1 23 483 505 483 506 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF600-208 - 791 3.2e-39 130.2 176.3 11 20 0.016 17 6.6 0.2 5 23 515 533 514 534 0.89 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF600-208 - 791 3.2e-39 130.2 176.3 12 20 0.00046 0.49 11.4 4.0 1 23 539 561 539 562 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF600-208 - 791 3.2e-39 130.2 176.3 13 20 0.00029 0.31 12.0 1.9 1 23 567 589 567 590 0.89 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF600-208 - 791 3.2e-39 130.2 176.3 14 20 0.0023 2.4 9.2 7.0 1 23 595 617 595 618 0.86 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF600-208 - 791 3.2e-39 130.2 176.3 15 20 6.7e-05 0.071 14.0 4.0 1 23 623 645 623 646 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF600-208 - 791 3.2e-39 130.2 176.3 16 20 7.7e-05 0.081 13.8 0.5 1 23 651 673 651 674 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF600-208 - 791 3.2e-39 130.2 176.3 17 20 0.00011 0.12 13.3 0.9 1 23 679 701 679 702 0.90 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF600-208 - 791 3.2e-39 130.2 176.3 18 20 5.4e-06 0.0057 17.4 3.0 1 23 707 729 707 730 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF600-208 - 791 3.2e-39 130.2 176.3 19 20 7.8e-05 0.082 13.8 1.4 1 20 735 754 735 758 0.89 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF600-208 - 791 3.2e-39 130.2 176.3 20 20 1.7e-05 0.018 15.9 0.7 1 23 763 785 763 786 0.91 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF600-208 - 791 1.6e-23 82.2 157.3 1 19 0.036 38 4.4 9.9 2 24 259 281 258 284 0.92 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF600-208 - 791 1.6e-23 82.2 157.3 2 19 4.7e-05 0.05 13.6 2.8 2 24 287 309 287 312 0.92 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF600-208 - 791 1.6e-23 82.2 157.3 3 19 0.0015 1.6 8.8 0.3 2 22 315 335 314 339 0.82 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF600-208 - 791 1.6e-23 82.2 157.3 4 19 2.1e-05 0.022 14.8 0.3 2 24 343 365 343 368 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF600-208 - 791 1.6e-23 82.2 157.3 5 19 0.00011 0.11 12.5 1.0 2 24 371 393 371 396 0.92 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF600-208 - 791 1.6e-23 82.2 157.3 6 19 0.051 54 3.9 0.2 2 11 399 408 399 421 0.89 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF600-208 - 791 1.6e-23 82.2 157.3 7 19 0.00035 0.37 10.8 0.9 2 12 427 437 426 442 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF600-208 - 791 1.6e-23 82.2 157.3 8 19 0.0013 1.4 9.0 0.4 2 11 455 464 454 475 0.86 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF600-208 - 791 1.6e-23 82.2 157.3 9 19 0.00042 0.44 10.6 0.3 2 12 483 493 483 505 0.86 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF600-208 - 791 1.6e-23 82.2 157.3 10 19 0.024 25 5.0 0.1 6 24 515 533 514 536 0.90 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF600-208 - 791 1.6e-23 82.2 157.3 11 19 0.0057 6 7.0 1.5 2 11 539 548 539 560 0.95 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF600-208 - 791 1.6e-23 82.2 157.3 12 19 0.00045 0.47 10.5 0.5 2 12 567 577 567 590 0.92 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF600-208 - 791 1.6e-23 82.2 157.3 13 19 0.0015 1.5 8.9 2.0 2 12 595 605 595 606 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF600-208 - 791 1.6e-23 82.2 157.3 14 19 0.00078 0.83 9.7 2.1 2 19 623 640 623 647 0.76 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF600-208 - 791 1.6e-23 82.2 157.3 15 19 0.0014 1.5 8.9 0.3 2 12 651 661 650 671 0.92 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF600-208 - 791 1.6e-23 82.2 157.3 16 19 0.0011 1.2 9.2 0.6 2 13 679 690 679 701 0.87 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF600-208 - 791 1.6e-23 82.2 157.3 17 19 0.096 1e+02 3.1 6.7 2 14 707 719 706 730 0.73 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF600-208 - 791 1.6e-23 82.2 157.3 18 19 0.00092 0.97 9.5 3.6 2 13 735 746 735 754 0.92 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF600-208 - 791 1.6e-23 82.2 157.3 19 19 0.00024 0.25 11.4 2.0 2 21 763 782 763 785 0.87 C2H2-type zinc finger KRAB PF01352.27 42 ZNF600-208 - 791 5.5e-21 73.9 0.1 1 1 9.2e-24 9.8e-21 73.1 0.1 2 41 24 63 23 64 0.95 KRAB box BolA PF01722.18 76 ZNF600-208 - 791 1.4e-13 50.9 39.7 1 11 4.9 5.2e+03 -2.2 0.0 27 50 227 250 214 253 0.79 BolA-like protein BolA PF01722.18 76 ZNF600-208 - 791 1.4e-13 50.9 39.7 2 11 0.18 1.9e+02 2.4 0.1 25 58 281 314 239 319 0.81 BolA-like protein BolA PF01722.18 76 ZNF600-208 - 791 1.4e-13 50.9 39.7 3 11 0.0012 1.2 9.4 0.1 23 53 335 365 325 367 0.84 BolA-like protein BolA PF01722.18 76 ZNF600-208 - 791 1.4e-13 50.9 39.7 4 11 0.00014 0.15 12.4 0.1 15 53 387 421 378 423 0.83 BolA-like protein BolA PF01722.18 76 ZNF600-208 - 791 1.4e-13 50.9 39.7 5 11 0.00077 0.81 10.0 0.8 16 53 440 477 435 479 0.85 BolA-like protein BolA PF01722.18 76 ZNF600-208 - 791 1.4e-13 50.9 39.7 6 11 0.014 15 6.0 0.3 27 53 535 561 523 591 0.58 BolA-like protein BolA PF01722.18 76 ZNF600-208 - 791 1.4e-13 50.9 39.7 7 11 0.046 48 4.3 0.5 17 52 581 616 572 619 0.83 BolA-like protein BolA PF01722.18 76 ZNF600-208 - 791 1.4e-13 50.9 39.7 8 11 0.24 2.5e+02 2.0 1.3 14 52 606 644 601 646 0.90 BolA-like protein BolA PF01722.18 76 ZNF600-208 - 791 1.4e-13 50.9 39.7 9 11 0.00031 0.33 11.3 0.6 19 55 640 675 630 679 0.82 BolA-like protein BolA PF01722.18 76 ZNF600-208 - 791 1.4e-13 50.9 39.7 10 11 0.00069 0.73 10.1 1.1 17 53 693 729 687 730 0.82 BolA-like protein BolA PF01722.18 76 ZNF600-208 - 791 1.4e-13 50.9 39.7 11 11 0.022 24 5.3 0.1 15 54 747 786 733 789 0.84 BolA-like protein zf-C2H2_jaz PF12171.8 27 ZNF600-208 - 791 1.2e-11 44.6 118.2 1 19 1.3 1.3e+03 -0.2 5.9 1 17 258 274 258 279 0.83 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF600-208 - 791 1.2e-11 44.6 118.2 2 19 0.25 2.7e+02 2.0 0.4 2 13 287 298 286 307 0.80 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF600-208 - 791 1.2e-11 44.6 118.2 3 19 0.13 1.3e+02 3.0 0.2 2 20 315 333 314 335 0.86 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF600-208 - 791 1.2e-11 44.6 118.2 4 19 0.0012 1.3 9.4 0.5 2 21 343 362 342 363 0.91 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF600-208 - 791 1.2e-11 44.6 118.2 5 19 4.1e-06 0.0043 17.3 0.2 2 22 371 391 370 391 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF600-208 - 791 1.2e-11 44.6 118.2 6 19 0.094 99 3.4 0.2 2 21 399 418 398 419 0.80 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF600-208 - 791 1.2e-11 44.6 118.2 7 19 0.09 95 3.5 1.8 2 17 427 442 426 445 0.86 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF600-208 - 791 1.2e-11 44.6 118.2 8 19 0.0049 5.2 7.5 0.4 2 20 455 473 454 475 0.76 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF600-208 - 791 1.2e-11 44.6 118.2 9 19 0.066 70 3.9 0.1 2 21 483 502 482 503 0.82 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF600-208 - 791 1.2e-11 44.6 118.2 10 19 1.7 1.8e+03 -0.6 0.1 6 20 515 529 514 530 0.81 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF600-208 - 791 1.2e-11 44.6 118.2 11 19 0.017 18 5.7 2.3 2 20 539 557 538 559 0.78 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF600-208 - 791 1.2e-11 44.6 118.2 12 19 0.073 77 3.7 0.1 2 12 567 577 566 587 0.85 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF600-208 - 791 1.2e-11 44.6 118.2 13 19 0.17 1.7e+02 2.6 1.8 2 12 595 605 594 613 0.90 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF600-208 - 791 1.2e-11 44.6 118.2 14 19 0.096 1e+02 3.4 0.2 2 12 623 633 622 642 0.88 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF600-208 - 791 1.2e-11 44.6 118.2 15 19 0.0028 3 8.3 0.2 2 20 651 669 650 671 0.86 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF600-208 - 791 1.2e-11 44.6 118.2 16 19 0.03 32 5.0 0.4 2 20 679 697 678 697 0.91 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF600-208 - 791 1.2e-11 44.6 118.2 17 19 3.5e-05 0.037 14.3 0.7 2 21 707 726 706 727 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF600-208 - 791 1.2e-11 44.6 118.2 18 19 8.4e-07 0.00088 19.5 0.4 2 20 735 753 734 754 0.95 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF600-208 - 791 1.2e-11 44.6 118.2 19 19 0.011 12 6.3 0.4 2 20 763 781 762 783 0.88 Zinc-finger double-stranded RNA-binding zf-met PF12874.7 25 ZNF600-208 - 791 4.5e-11 42.7 138.4 1 19 0.0071 7.5 7.1 5.0 1 21 259 279 259 279 0.93 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF600-208 - 791 4.5e-11 42.7 138.4 2 19 0.42 4.4e+02 1.5 1.7 1 19 287 305 287 307 0.89 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF600-208 - 791 4.5e-11 42.7 138.4 3 19 6 6.3e+03 -2.2 0.2 2 19 316 333 315 336 0.77 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF600-208 - 791 4.5e-11 42.7 138.4 4 19 0.0041 4.3 7.9 0.7 1 20 343 362 343 366 0.90 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF600-208 - 791 4.5e-11 42.7 138.4 5 19 5.8e-06 0.0061 16.9 0.7 1 21 371 391 371 394 0.92 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF600-208 - 791 4.5e-11 42.7 138.4 6 19 0.0027 2.8 8.4 0.6 1 21 399 419 399 422 0.89 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF600-208 - 791 4.5e-11 42.7 138.4 7 19 0.038 40 4.8 3.7 1 19 427 445 427 445 0.94 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF600-208 - 791 4.5e-11 42.7 138.4 8 19 0.014 14 6.2 0.6 1 19 455 473 455 477 0.75 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF600-208 - 791 4.5e-11 42.7 138.4 9 19 0.19 2e+02 2.6 0.3 1 20 483 502 483 506 0.87 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF600-208 - 791 4.5e-11 42.7 138.4 10 19 0.33 3.5e+02 1.8 0.1 6 19 516 529 514 531 0.92 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF600-208 - 791 4.5e-11 42.7 138.4 11 19 0.00059 0.62 10.5 3.3 1 21 539 559 539 561 0.92 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF600-208 - 791 4.5e-11 42.7 138.4 12 19 0.14 1.5e+02 3.0 0.3 1 19 567 585 567 587 0.89 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF600-208 - 791 4.5e-11 42.7 138.4 13 19 0.21 2.3e+02 2.4 4.1 1 19 595 613 595 615 0.93 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF600-208 - 791 4.5e-11 42.7 138.4 14 19 0.09 95 3.6 0.2 1 15 623 637 623 641 0.86 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF600-208 - 791 4.5e-11 42.7 138.4 15 19 0.0015 1.5 9.3 0.3 1 21 651 671 651 674 0.91 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF600-208 - 791 4.5e-11 42.7 138.4 16 19 0.065 68 4.0 0.9 1 19 679 697 679 699 0.93 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF600-208 - 791 4.5e-11 42.7 138.4 17 19 9.3e-06 0.0098 16.3 0.9 1 19 707 725 707 729 0.93 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF600-208 - 791 4.5e-11 42.7 138.4 18 19 4.2e-07 0.00044 20.5 0.3 1 19 735 753 735 755 0.95 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF600-208 - 791 4.5e-11 42.7 138.4 19 19 0.36 3.8e+02 1.7 0.6 1 18 763 780 763 783 0.87 Zinc-finger of C2H2 type # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF600-208.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF600-208.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF600-208.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF600-208.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF600-208.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:10:34 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF605-201.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF605-201.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF605-201.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF605-201.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF605-201.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:10:34 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZNF605-202 - 641 8.8e-119 383.1 122.5 1 19 0.091 96 3.7 0.3 7 19 91 106 86 106 0.82 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF605-202 - 641 8.8e-119 383.1 122.5 2 19 1.3 1.4e+03 0.0 1.0 9 24 137 152 135 153 0.70 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF605-202 - 641 8.8e-119 383.1 122.5 3 19 0.048 51 4.6 0.4 8 25 164 179 162 180 0.86 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF605-202 - 641 8.8e-119 383.1 122.5 4 19 6.4e-12 6.8e-09 35.8 0.2 2 25 184 207 183 208 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF605-202 - 641 8.8e-119 383.1 122.5 5 19 7e-08 7.4e-05 23.0 1.0 2 25 212 235 212 236 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF605-202 - 641 8.8e-119 383.1 122.5 6 19 1.7e-09 1.8e-06 28.1 0.1 5 25 243 263 240 264 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF605-202 - 641 8.8e-119 383.1 122.5 7 19 3.7e-10 3.9e-07 30.2 0.3 2 25 268 291 267 292 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF605-202 - 641 8.8e-119 383.1 122.5 8 19 1.6e-08 1.6e-05 25.1 2.1 3 24 297 318 295 319 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF605-202 - 641 8.8e-119 383.1 122.5 9 19 5.9e-08 6.2e-05 23.2 0.5 4 25 326 347 323 348 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF605-202 - 641 8.8e-119 383.1 122.5 10 19 1e-10 1.1e-07 32.0 0.1 2 24 352 374 352 376 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF605-202 - 641 8.8e-119 383.1 122.5 11 19 1.9e-07 0.0002 21.6 0.4 2 24 380 402 379 404 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF605-202 - 641 8.8e-119 383.1 122.5 12 19 3.4e-08 3.6e-05 24.0 0.2 2 24 408 430 407 431 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF605-202 - 641 8.8e-119 383.1 122.5 13 19 6.7e-11 7e-08 32.6 1.5 4 25 438 459 435 460 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF605-202 - 641 8.8e-119 383.1 122.5 14 19 4.7e-12 4.9e-09 36.2 0.7 2 25 464 487 463 488 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF605-202 - 641 8.8e-119 383.1 122.5 15 19 4e-11 4.2e-08 33.3 1.3 2 25 492 515 491 515 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF605-202 - 641 8.8e-119 383.1 122.5 16 19 8.7e-13 9.2e-10 38.5 0.1 2 25 520 543 519 544 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF605-202 - 641 8.8e-119 383.1 122.5 17 19 5e-08 5.2e-05 23.5 0.3 2 24 548 570 547 571 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF605-202 - 641 8.8e-119 383.1 122.5 18 19 7.3e-10 7.7e-07 29.3 0.2 5 26 579 600 576 600 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF605-202 - 641 8.8e-119 383.1 122.5 19 19 2.3e-07 0.00025 21.4 0.9 1 25 603 627 603 628 0.95 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZNF605-202 - 641 2.5e-91 295.4 125.3 1 18 3.4 3.5e+03 -1.2 1.8 5 14 142 151 141 155 0.63 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF605-202 - 641 2.5e-91 295.4 125.3 2 18 2.4e-07 0.00026 21.3 1.1 1 23 169 191 169 191 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF605-202 - 641 2.5e-91 295.4 125.3 3 18 2.6e-10 2.7e-07 30.7 0.7 1 23 197 219 197 219 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF605-202 - 641 2.5e-91 295.4 125.3 4 18 3.1e-07 0.00032 21.0 0.7 3 23 227 247 227 247 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF605-202 - 641 2.5e-91 295.4 125.3 5 18 6.3e-09 6.6e-06 26.3 0.7 3 23 255 275 253 275 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF605-202 - 641 2.5e-91 295.4 125.3 6 18 5e-07 0.00053 20.3 0.5 1 23 281 303 281 303 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF605-202 - 641 2.5e-91 295.4 125.3 7 18 1.6e-06 0.0017 18.7 2.0 1 23 309 331 309 331 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF605-202 - 641 2.5e-91 295.4 125.3 8 18 3.5e-08 3.7e-05 23.9 0.3 3 23 339 359 337 359 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF605-202 - 641 2.5e-91 295.4 125.3 9 18 1.1e-07 0.00012 22.3 0.1 1 23 365 387 365 387 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF605-202 - 641 2.5e-91 295.4 125.3 10 18 3e-07 0.00032 21.0 0.6 1 23 393 415 393 415 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF605-202 - 641 2.5e-91 295.4 125.3 11 18 0.00016 0.16 12.5 1.9 5 23 425 443 422 443 0.95 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF605-202 - 641 2.5e-91 295.4 125.3 12 18 6.4e-10 6.7e-07 29.4 0.6 1 23 449 471 449 471 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF605-202 - 641 2.5e-91 295.4 125.3 13 18 1.5e-07 0.00016 22.0 3.5 1 23 477 499 477 499 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF605-202 - 641 2.5e-91 295.4 125.3 14 18 5.3e-05 0.056 13.9 0.2 1 23 505 527 505 527 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF605-202 - 641 2.5e-91 295.4 125.3 15 18 2.2e-08 2.4e-05 24.6 0.2 1 23 533 555 533 555 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF605-202 - 641 2.5e-91 295.4 125.3 16 18 0.00013 0.14 12.7 0.1 3 23 563 583 561 583 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF605-202 - 641 2.5e-91 295.4 125.3 17 18 7e-11 7.4e-08 32.4 3.4 1 23 589 611 589 611 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF605-202 - 641 2.5e-91 295.4 125.3 18 18 5.1e-08 5.4e-05 23.4 0.7 3 23 619 639 617 639 0.97 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZNF605-202 - 641 9e-52 169.2 122.1 1 18 7.4 7.8e+03 -1.7 0.8 3 16 145 158 142 165 0.61 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF605-202 - 641 9e-52 169.2 122.1 2 18 0.00049 0.52 11.3 0.9 1 23 169 191 169 192 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF605-202 - 641 9e-52 169.2 122.1 3 18 2.3e-06 0.0025 18.5 0.9 1 23 197 219 197 220 0.86 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF605-202 - 641 9e-52 169.2 122.1 4 18 0.0017 1.8 9.6 1.1 3 23 227 247 225 248 0.86 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF605-202 - 641 9e-52 169.2 122.1 5 18 1.4e-06 0.0014 19.3 0.7 2 23 254 275 253 276 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF605-202 - 641 9e-52 169.2 122.1 6 18 1.2e-05 0.012 16.3 0.6 1 23 281 303 281 304 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF605-202 - 641 9e-52 169.2 122.1 7 18 0.00013 0.14 13.1 2.0 1 23 309 331 309 332 0.88 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF605-202 - 641 9e-52 169.2 122.1 8 18 0.00022 0.23 12.4 0.2 2 23 338 359 337 360 0.89 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF605-202 - 641 9e-52 169.2 122.1 9 18 6.3e-05 0.066 14.1 0.1 1 23 365 387 365 388 0.97 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF605-202 - 641 9e-52 169.2 122.1 10 18 7.8e-05 0.082 13.8 0.6 1 23 393 415 393 416 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF605-202 - 641 9e-52 169.2 122.1 11 18 2e-05 0.021 15.6 1.4 2 23 422 443 421 444 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF605-202 - 641 9e-52 169.2 122.1 12 18 2.1e-06 0.0022 18.7 0.7 1 23 449 471 449 472 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF605-202 - 641 9e-52 169.2 122.1 13 18 1.7e-06 0.0018 18.9 2.8 1 23 477 499 477 500 0.97 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF605-202 - 641 9e-52 169.2 122.1 14 18 0.0011 1.1 10.3 0.5 1 23 505 527 505 528 0.87 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF605-202 - 641 9e-52 169.2 122.1 15 18 4.9e-06 0.0052 17.5 0.4 1 23 533 555 533 556 0.97 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF605-202 - 641 9e-52 169.2 122.1 16 18 0.0062 6.5 7.9 0.1 2 23 562 583 561 584 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF605-202 - 641 9e-52 169.2 122.1 17 18 1.9e-06 0.002 18.8 2.2 1 23 589 611 589 612 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF605-202 - 641 9e-52 169.2 122.1 18 18 4.5e-05 0.047 14.5 0.2 2 23 618 639 617 640 0.94 C2H2-type zinc finger KRAB PF01352.27 42 ZNF605-202 - 641 5.1e-24 83.6 1.4 1 1 9.3e-27 9.8e-24 82.7 1.4 2 41 6 45 5 46 0.96 KRAB box Zn-ribbon_8 PF09723.10 40 ZNF605-202 - 641 8.9e-14 51.3 80.3 1 14 0.002 2.1 8.5 3.5 6 35 169 205 168 209 0.82 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF605-202 - 641 8.9e-14 51.3 80.3 2 14 2.5e-05 0.027 14.6 2.6 6 38 197 236 195 239 0.92 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF605-202 - 641 8.9e-14 51.3 80.3 3 14 0.001 1.1 9.5 2.8 8 38 227 264 226 266 0.91 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF605-202 - 641 8.9e-14 51.3 80.3 4 14 0.035 37 4.5 0.2 6 17 253 264 251 274 0.79 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF605-202 - 641 8.9e-14 51.3 80.3 5 14 8.8e-05 0.093 12.9 2.1 6 34 281 316 280 318 0.89 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF605-202 - 641 8.9e-14 51.3 80.3 6 14 0.00013 0.13 12.4 1.3 6 35 337 373 336 377 0.89 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF605-202 - 641 8.9e-14 51.3 80.3 7 14 0.001 1.1 9.5 1.6 6 34 393 428 392 431 0.90 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF605-202 - 641 8.9e-14 51.3 80.3 8 14 0.005 5.3 7.3 6.9 6 34 449 484 448 489 0.85 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF605-202 - 641 8.9e-14 51.3 80.3 9 14 0.079 83 3.4 6.8 6 34 477 512 475 515 0.85 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF605-202 - 641 8.9e-14 51.3 80.3 10 14 0.00036 0.38 10.9 3.3 6 38 505 545 504 547 0.90 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF605-202 - 641 8.9e-14 51.3 80.3 11 14 0.0013 1.4 9.1 3.3 6 34 533 568 532 574 0.85 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF605-202 - 641 8.9e-14 51.3 80.3 12 14 0.0028 3 8.0 3.2 6 38 561 600 559 601 0.85 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF605-202 - 641 8.9e-14 51.3 80.3 13 14 1.5e-05 0.016 15.3 2.1 6 38 589 628 588 630 0.92 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF605-202 - 641 8.9e-14 51.3 80.3 14 14 0.0098 10 6.3 0.2 6 17 617 628 615 637 0.79 Zinc ribbon domain zf-C2H2_6 PF13912.6 27 ZNF605-202 - 641 4.1e-07 29.8 123.6 1 18 4 4.2e+03 -2.1 1.1 4 10 145 151 144 151 0.89 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF605-202 - 641 4.1e-07 29.8 123.6 2 18 0.26 2.7e+02 1.7 0.3 1 13 168 180 168 193 0.79 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF605-202 - 641 4.1e-07 29.8 123.6 3 18 0.0014 1.5 8.9 0.7 2 12 197 207 197 222 0.76 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF605-202 - 641 4.1e-07 29.8 123.6 4 18 0.019 20 5.3 0.7 2 12 225 235 225 236 0.91 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF605-202 - 641 4.1e-07 29.8 123.6 5 18 0.0025 2.6 8.1 0.9 2 13 253 264 253 276 0.77 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF605-202 - 641 4.1e-07 29.8 123.6 6 18 0.0017 1.8 8.6 1.0 2 24 281 303 281 306 0.84 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF605-202 - 641 4.1e-07 29.8 123.6 7 18 0.3 3.2e+02 1.5 2.9 2 24 309 331 309 334 0.72 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF605-202 - 641 4.1e-07 29.8 123.6 8 18 0.41 4.3e+02 1.1 0.1 2 12 337 347 337 356 0.91 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF605-202 - 641 4.1e-07 29.8 123.6 9 18 0.0032 3.4 7.8 0.1 2 24 365 387 365 390 0.79 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF605-202 - 641 4.1e-07 29.8 123.6 10 18 0.55 5.8e+02 0.7 0.5 2 22 393 413 393 418 0.74 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF605-202 - 641 4.1e-07 29.8 123.6 11 18 0.18 1.9e+02 2.2 0.4 2 11 421 430 421 443 0.89 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF605-202 - 641 4.1e-07 29.8 123.6 12 18 9.7e-06 0.01 15.8 1.4 2 24 449 471 449 474 0.95 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF605-202 - 641 4.1e-07 29.8 123.6 13 18 0.00022 0.23 11.5 3.1 2 24 477 499 477 502 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF605-202 - 641 4.1e-07 29.8 123.6 14 18 0.017 18 5.5 0.9 2 11 505 514 505 515 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF605-202 - 641 4.1e-07 29.8 123.6 15 18 1.3e-05 0.014 15.4 0.6 2 24 533 555 533 558 0.95 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF605-202 - 641 4.1e-07 29.8 123.6 16 18 2.7 2.9e+03 -1.6 0.2 2 11 561 570 560 570 0.88 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF605-202 - 641 4.1e-07 29.8 123.6 17 18 0.0036 3.8 7.6 1.1 2 13 589 600 589 611 0.79 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF605-202 - 641 4.1e-07 29.8 123.6 18 18 0.0039 4.2 7.5 0.7 1 24 616 639 616 639 0.88 C2H2-type zinc finger # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF605-202.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF605-202.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF605-202.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF605-202.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF605-202.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:10:34 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF605-203.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF605-203.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF605-203.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF605-203.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF605-203.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:10:35 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZNF605-204 - 672 2.5e-118 381.7 122.5 1 19 0.096 1e+02 3.6 0.3 7 19 122 137 117 137 0.82 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF605-204 - 672 2.5e-118 381.7 122.5 2 19 1.4 1.5e+03 -0.1 1.0 9 24 168 183 166 184 0.70 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF605-204 - 672 2.5e-118 381.7 122.5 3 19 0.051 53 4.5 0.4 8 25 195 210 193 211 0.86 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF605-204 - 672 2.5e-118 381.7 122.5 4 19 6.8e-12 7.2e-09 35.7 0.2 2 25 215 238 214 239 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF605-204 - 672 2.5e-118 381.7 122.5 5 19 7.4e-08 7.8e-05 22.9 1.0 2 25 243 266 243 267 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF605-204 - 672 2.5e-118 381.7 122.5 6 19 1.8e-09 1.9e-06 28.0 0.1 5 25 274 294 271 295 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF605-204 - 672 2.5e-118 381.7 122.5 7 19 3.9e-10 4.2e-07 30.1 0.3 2 25 299 322 298 323 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF605-204 - 672 2.5e-118 381.7 122.5 8 19 1.6e-08 1.7e-05 25.0 2.1 3 24 328 349 326 350 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF605-204 - 672 2.5e-118 381.7 122.5 9 19 6.2e-08 6.5e-05 23.2 0.5 4 25 357 378 354 379 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF605-204 - 672 2.5e-118 381.7 122.5 10 19 1.1e-10 1.1e-07 31.9 0.1 2 24 383 405 383 407 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF605-204 - 672 2.5e-118 381.7 122.5 11 19 2e-07 0.00022 21.5 0.4 2 24 411 433 410 435 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF605-204 - 672 2.5e-118 381.7 122.5 12 19 3.6e-08 3.8e-05 23.9 0.2 2 24 439 461 438 462 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF605-204 - 672 2.5e-118 381.7 122.5 13 19 7e-11 7.4e-08 32.5 1.5 4 25 469 490 466 491 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF605-204 - 672 2.5e-118 381.7 122.5 14 19 4.9e-12 5.2e-09 36.1 0.7 2 25 495 518 494 519 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF605-204 - 672 2.5e-118 381.7 122.5 15 19 4.2e-11 4.5e-08 33.2 1.3 2 25 523 546 522 546 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF605-204 - 672 2.5e-118 381.7 122.5 16 19 9.2e-13 9.7e-10 38.4 0.1 2 25 551 574 550 575 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF605-204 - 672 2.5e-118 381.7 122.5 17 19 5.2e-08 5.5e-05 23.4 0.3 2 24 579 601 578 602 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF605-204 - 672 2.5e-118 381.7 122.5 18 19 7.7e-10 8.2e-07 29.2 0.2 5 26 610 631 607 631 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF605-204 - 672 2.5e-118 381.7 122.5 19 19 2.5e-07 0.00026 21.3 0.9 1 25 634 658 634 659 0.95 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZNF605-204 - 672 6.6e-91 294.0 125.3 1 18 3.5 3.7e+03 -1.3 1.8 5 14 173 182 172 186 0.63 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF605-204 - 672 6.6e-91 294.0 125.3 2 18 2.6e-07 0.00027 21.2 1.1 1 23 200 222 200 222 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF605-204 - 672 6.6e-91 294.0 125.3 3 18 2.7e-10 2.9e-07 30.6 0.7 1 23 228 250 228 250 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF605-204 - 672 6.6e-91 294.0 125.3 4 18 3.2e-07 0.00034 20.9 0.7 3 23 258 278 258 278 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF605-204 - 672 6.6e-91 294.0 125.3 5 18 6.6e-09 7e-06 26.2 0.7 3 23 286 306 284 306 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF605-204 - 672 6.6e-91 294.0 125.3 6 18 5.3e-07 0.00056 20.2 0.5 1 23 312 334 312 334 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF605-204 - 672 6.6e-91 294.0 125.3 7 18 1.7e-06 0.0018 18.6 2.0 1 23 340 362 340 362 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF605-204 - 672 6.6e-91 294.0 125.3 8 18 3.7e-08 3.9e-05 23.9 0.3 3 23 370 390 368 390 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF605-204 - 672 6.6e-91 294.0 125.3 9 18 1.2e-07 0.00013 22.2 0.1 1 23 396 418 396 418 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF605-204 - 672 6.6e-91 294.0 125.3 10 18 3.2e-07 0.00034 20.9 0.6 1 23 424 446 424 446 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF605-204 - 672 6.6e-91 294.0 125.3 11 18 0.00016 0.17 12.4 1.9 5 23 456 474 453 474 0.95 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF605-204 - 672 6.6e-91 294.0 125.3 12 18 6.8e-10 7.1e-07 29.3 0.6 1 23 480 502 480 502 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF605-204 - 672 6.6e-91 294.0 125.3 13 18 1.6e-07 0.00017 21.9 3.5 1 23 508 530 508 530 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF605-204 - 672 6.6e-91 294.0 125.3 14 18 5.6e-05 0.059 13.8 0.2 1 23 536 558 536 558 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF605-204 - 672 6.6e-91 294.0 125.3 15 18 2.4e-08 2.5e-05 24.5 0.2 1 23 564 586 564 586 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF605-204 - 672 6.6e-91 294.0 125.3 16 18 0.00014 0.15 12.6 0.1 3 23 594 614 592 614 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF605-204 - 672 6.6e-91 294.0 125.3 17 18 7.4e-11 7.8e-08 32.4 3.4 1 23 620 642 620 642 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF605-204 - 672 6.6e-91 294.0 125.3 18 18 5.4e-08 5.7e-05 23.3 0.7 3 23 650 670 648 670 0.97 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZNF605-204 - 672 2.4e-51 167.9 122.1 1 18 7.8 8.3e+03 -1.8 0.8 3 16 176 189 173 196 0.61 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF605-204 - 672 2.4e-51 167.9 122.1 2 18 0.00052 0.55 11.2 0.9 1 23 200 222 200 223 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF605-204 - 672 2.4e-51 167.9 122.1 3 18 2.5e-06 0.0026 18.4 0.9 1 23 228 250 228 251 0.86 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF605-204 - 672 2.4e-51 167.9 122.1 4 18 0.0018 1.9 9.5 1.1 3 23 258 278 256 279 0.86 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF605-204 - 672 2.4e-51 167.9 122.1 5 18 1.4e-06 0.0015 19.2 0.7 2 23 285 306 284 307 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF605-204 - 672 2.4e-51 167.9 122.1 6 18 1.2e-05 0.013 16.3 0.6 1 23 312 334 312 335 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF605-204 - 672 2.4e-51 167.9 122.1 7 18 0.00014 0.14 13.0 2.0 1 23 340 362 340 363 0.88 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF605-204 - 672 2.4e-51 167.9 122.1 8 18 0.00023 0.24 12.3 0.2 2 23 369 390 368 391 0.89 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF605-204 - 672 2.4e-51 167.9 122.1 9 18 6.7e-05 0.07 14.0 0.1 1 23 396 418 396 419 0.97 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF605-204 - 672 2.4e-51 167.9 122.1 10 18 8.2e-05 0.087 13.7 0.6 1 23 424 446 424 447 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF605-204 - 672 2.4e-51 167.9 122.1 11 18 2.1e-05 0.022 15.5 1.4 2 23 453 474 452 475 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF605-204 - 672 2.4e-51 167.9 122.1 12 18 2.2e-06 0.0024 18.6 0.7 1 23 480 502 480 503 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF605-204 - 672 2.4e-51 167.9 122.1 13 18 1.8e-06 0.0019 18.8 2.8 1 23 508 530 508 531 0.97 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF605-204 - 672 2.4e-51 167.9 122.1 14 18 0.0011 1.2 10.2 0.5 1 23 536 558 536 559 0.87 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF605-204 - 672 2.4e-51 167.9 122.1 15 18 5.2e-06 0.0055 17.4 0.4 1 23 564 586 564 587 0.97 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF605-204 - 672 2.4e-51 167.9 122.1 16 18 0.0066 6.9 7.8 0.1 2 23 593 614 592 615 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF605-204 - 672 2.4e-51 167.9 122.1 17 18 2.1e-06 0.0022 18.7 2.2 1 23 620 642 620 643 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF605-204 - 672 2.4e-51 167.9 122.1 18 18 4.7e-05 0.05 14.5 0.2 2 23 649 670 648 671 0.94 C2H2-type zinc finger KRAB PF01352.27 42 ZNF605-204 - 672 6.4e-25 86.5 0.6 1 1 1.2e-27 1.2e-24 85.6 0.6 2 42 6 46 5 46 0.97 KRAB box Zn-ribbon_8 PF09723.10 40 ZNF605-204 - 672 1.8e-13 50.3 80.5 1 14 0.0018 1.9 8.7 3.3 6 35 200 236 199 240 0.82 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF605-204 - 672 1.8e-13 50.3 80.5 2 14 3.2e-05 0.034 14.3 2.9 6 38 228 267 226 269 0.92 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF605-204 - 672 1.8e-13 50.3 80.5 3 14 0.00096 1 9.5 2.8 8 38 258 295 256 297 0.91 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF605-204 - 672 1.8e-13 50.3 80.5 4 14 0.039 41 4.4 0.2 6 17 284 295 282 304 0.80 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF605-204 - 672 1.8e-13 50.3 80.5 5 14 9.3e-05 0.099 12.8 2.1 6 34 312 347 311 349 0.89 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF605-204 - 672 1.8e-13 50.3 80.5 6 14 0.00013 0.14 12.3 1.3 6 35 368 404 367 408 0.89 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF605-204 - 672 1.8e-13 50.3 80.5 7 14 0.0011 1.1 9.4 1.6 6 34 424 459 423 462 0.90 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF605-204 - 672 1.8e-13 50.3 80.5 8 14 0.0059 6.2 7.0 7.0 6 34 480 515 479 520 0.85 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF605-204 - 672 1.8e-13 50.3 80.5 9 14 0.093 98 3.2 6.9 6 34 508 543 506 546 0.85 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF605-204 - 672 1.8e-13 50.3 80.5 10 14 0.0004 0.43 10.7 3.4 6 38 536 576 535 578 0.90 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF605-204 - 672 1.8e-13 50.3 80.5 11 14 0.0019 2 8.6 3.7 6 34 564 599 562 604 0.85 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF605-204 - 672 1.8e-13 50.3 80.5 12 14 0.0034 3.6 7.8 3.3 6 38 592 631 591 632 0.84 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF605-204 - 672 1.8e-13 50.3 80.5 13 14 1.5e-05 0.016 15.3 2.0 6 38 620 659 619 661 0.92 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF605-204 - 672 1.8e-13 50.3 80.5 14 14 0.01 11 6.2 0.2 6 17 648 659 645 668 0.79 Zinc ribbon domain zf-C2H2_6 PF13912.6 27 ZNF605-204 - 672 1e-06 28.5 123.6 1 18 4.2 4.4e+03 -2.2 1.1 4 10 176 182 175 182 0.89 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF605-204 - 672 1e-06 28.5 123.6 2 18 0.27 2.9e+02 1.6 0.3 1 13 199 211 199 224 0.79 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF605-204 - 672 1e-06 28.5 123.6 3 18 0.0015 1.5 8.9 0.7 2 12 228 238 228 253 0.76 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF605-204 - 672 1e-06 28.5 123.6 4 18 0.02 21 5.3 0.7 2 12 256 266 256 267 0.91 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF605-204 - 672 1e-06 28.5 123.6 5 18 0.0026 2.7 8.1 0.8 2 13 284 295 284 307 0.77 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF605-204 - 672 1e-06 28.5 123.6 6 18 0.0018 1.9 8.6 1.0 2 24 312 334 312 337 0.84 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF605-204 - 672 1e-06 28.5 123.6 7 18 0.32 3.4e+02 1.4 2.9 2 24 340 362 340 365 0.72 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF605-204 - 672 1e-06 28.5 123.6 8 18 0.43 4.5e+02 1.0 0.1 2 12 368 378 368 387 0.91 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF605-204 - 672 1e-06 28.5 123.6 9 18 0.0034 3.6 7.7 0.1 2 24 396 418 396 421 0.78 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF605-204 - 672 1e-06 28.5 123.6 10 18 0.58 6.1e+02 0.6 0.5 2 22 424 444 424 449 0.74 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF605-204 - 672 1e-06 28.5 123.6 11 18 0.19 2e+02 2.1 0.4 2 11 452 461 452 474 0.89 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF605-204 - 672 1e-06 28.5 123.6 12 18 1e-05 0.011 15.7 1.4 2 24 480 502 480 505 0.95 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF605-204 - 672 1e-06 28.5 123.6 13 18 0.00023 0.24 11.4 3.1 2 24 508 530 508 533 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF605-204 - 672 1e-06 28.5 123.6 14 18 0.018 19 5.4 0.9 2 11 536 545 536 546 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF605-204 - 672 1e-06 28.5 123.6 15 18 1.4e-05 0.015 15.3 0.6 2 24 564 586 564 589 0.95 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF605-204 - 672 1e-06 28.5 123.6 16 18 2.9 3e+03 -1.6 0.2 2 11 592 601 591 601 0.88 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF605-204 - 672 1e-06 28.5 123.6 17 18 0.0038 4 7.5 1.1 2 13 620 631 620 642 0.79 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF605-204 - 672 1e-06 28.5 123.6 18 18 0.0042 4.4 7.4 0.7 1 24 647 670 647 670 0.88 C2H2-type zinc finger # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF605-204.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF605-204.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF605-204.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF605-204.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF605-204.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:10:35 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF605-205.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF605-205.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF605-205.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF605-205.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF605-205.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:10:36 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF605-206.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF605-206.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF605-206.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF605-206.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF605-206.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:10:36 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZNF607-201 - 662 3.9e-121 390.6 167.5 1 21 3.9e-09 3.7e-06 27.1 1.8 5 26 70 91 67 91 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF607-201 - 662 3.9e-121 390.6 167.5 2 21 0.095 90 3.8 0.2 2 26 95 119 94 119 0.86 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF607-201 - 662 3.9e-121 390.6 167.5 3 21 6.6e-07 0.00062 20.1 0.3 1 25 122 146 122 147 0.89 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF607-201 - 662 3.9e-121 390.6 167.5 4 21 5.5e-06 0.0052 17.2 0.4 8 25 156 173 150 174 0.82 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF607-201 - 662 3.9e-121 390.6 167.5 5 21 1.9e-08 1.8e-05 25.0 2.9 2 25 178 201 177 201 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF607-201 - 662 3.9e-121 390.6 167.5 6 21 3.6e-11 3.4e-08 33.6 0.9 2 24 206 228 205 229 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF607-201 - 662 3.9e-121 390.6 167.5 7 21 1.9e-10 1.8e-07 31.3 0.7 2 25 234 257 233 258 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF607-201 - 662 3.9e-121 390.6 167.5 8 21 2.3e-10 2.2e-07 31.0 3.5 1 25 261 285 261 286 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF607-201 - 662 3.9e-121 390.6 167.5 9 21 0.052 49 4.6 0.1 2 19 290 307 289 314 0.83 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF607-201 - 662 3.9e-121 390.6 167.5 10 21 7.2e-06 0.0068 16.8 1.4 9 25 322 341 320 341 0.87 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF607-201 - 662 3.9e-121 390.6 167.5 11 21 5e-10 4.7e-07 29.9 1.1 2 24 346 368 345 369 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF607-201 - 662 3.9e-121 390.6 167.5 12 21 2.5e-10 2.4e-07 30.9 0.6 2 25 374 397 373 398 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF607-201 - 662 3.9e-121 390.6 167.5 13 21 3.8e-07 0.00035 20.8 6.7 2 25 402 425 401 426 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF607-201 - 662 3.9e-121 390.6 167.5 14 21 8.6e-10 8.1e-07 29.2 0.2 2 25 430 453 429 454 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF607-201 - 662 3.9e-121 390.6 167.5 15 21 3e-11 2.8e-08 33.8 1.0 2 25 458 481 457 481 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF607-201 - 662 3.9e-121 390.6 167.5 16 21 2.9e-09 2.8e-06 27.5 0.7 2 24 486 508 485 509 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF607-201 - 662 3.9e-121 390.6 167.5 17 21 3.3e-08 3.1e-05 24.2 1.4 2 26 514 538 514 538 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF607-201 - 662 3.9e-121 390.6 167.5 18 21 5.3e-08 5e-05 23.5 0.9 2 26 542 566 541 566 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF607-201 - 662 3.9e-121 390.6 167.5 19 21 3.7e-07 0.00035 20.9 4.7 4 24 572 592 569 594 0.90 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF607-201 - 662 3.9e-121 390.6 167.5 20 21 2.2e-06 0.002 18.4 0.1 2 26 598 622 597 622 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF607-201 - 662 3.9e-121 390.6 167.5 21 21 2.1e-08 2e-05 24.8 2.9 2 24 626 648 625 649 0.93 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZNF607-201 - 662 1.5e-82 267.7 159.8 1 21 7.4 7e+03 -2.1 1.0 12 23 63 74 61 74 0.77 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF607-201 - 662 1.5e-82 267.7 159.8 2 21 1e-06 0.00099 19.4 2.1 1 23 80 102 80 102 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF607-201 - 662 1.5e-82 267.7 159.8 3 21 0.021 20 5.9 0.3 8 21 115 128 108 129 0.83 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF607-201 - 662 1.5e-82 267.7 159.8 4 21 1.2e-07 0.00011 22.4 0.0 1 23 136 158 136 158 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF607-201 - 662 1.5e-82 267.7 159.8 5 21 3.8e-07 0.00036 20.8 2.1 1 23 163 185 163 185 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF607-201 - 662 1.5e-82 267.7 159.8 6 21 3e-06 0.0028 18.0 0.3 1 23 191 213 191 213 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF607-201 - 662 1.5e-82 267.7 159.8 7 21 2.9e-07 0.00027 21.2 0.4 1 23 219 241 219 241 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF607-201 - 662 1.5e-82 267.7 159.8 8 21 1.5e-06 0.0014 18.9 2.8 1 23 247 269 247 269 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF607-201 - 662 1.5e-82 267.7 159.8 9 21 3e-05 0.028 14.9 1.5 1 21 275 295 275 296 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF607-201 - 662 1.5e-82 267.7 159.8 10 21 3e-06 0.0028 18.0 0.5 1 23 331 353 331 353 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF607-201 - 662 1.5e-82 267.7 159.8 11 21 5.7e-08 5.4e-05 23.4 0.8 1 23 359 381 359 381 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF607-201 - 662 1.5e-82 267.7 159.8 12 21 1.2e-07 0.00012 22.4 2.9 1 23 387 409 387 409 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF607-201 - 662 1.5e-82 267.7 159.8 13 21 5.7e-06 0.0054 17.1 1.1 1 23 415 437 415 437 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF607-201 - 662 1.5e-82 267.7 159.8 14 21 3.8e-07 0.00036 20.8 1.9 1 23 443 465 443 465 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF607-201 - 662 1.5e-82 267.7 159.8 15 21 1.4e-07 0.00013 22.2 0.1 1 23 471 493 471 493 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF607-201 - 662 1.5e-82 267.7 159.8 16 21 1.1e-06 0.0011 19.4 0.5 1 23 499 521 499 521 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF607-201 - 662 1.5e-82 267.7 159.8 17 21 7.4e-06 0.007 16.8 1.4 1 23 527 549 527 549 0.95 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF607-201 - 662 1.5e-82 267.7 159.8 18 21 5.7e-08 5.4e-05 23.4 1.0 1 23 555 577 555 577 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF607-201 - 662 1.5e-82 267.7 159.8 19 21 0.00089 0.84 10.2 3.3 1 23 583 605 583 605 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF607-201 - 662 1.5e-82 267.7 159.8 20 21 5.4e-07 0.00051 20.4 2.0 1 23 611 633 611 633 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF607-201 - 662 1.5e-82 267.7 159.8 21 21 2e-05 0.019 15.4 1.8 1 23 639 661 639 661 0.98 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZNF607-201 - 662 4e-45 148.5 149.1 1 20 0.00024 0.23 12.4 1.8 1 23 80 102 80 103 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF607-201 - 662 4e-45 148.5 149.1 2 20 2.1 2e+03 0.2 0.2 7 21 114 128 108 129 0.77 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF607-201 - 662 4e-45 148.5 149.1 3 20 0.00021 0.2 12.6 0.1 1 19 136 154 136 158 0.90 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF607-201 - 662 4e-45 148.5 149.1 4 20 8.5e-05 0.08 13.8 2.0 1 23 163 185 163 186 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF607-201 - 662 4e-45 148.5 149.1 5 20 2e-05 0.019 15.8 0.4 1 23 191 213 191 214 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF607-201 - 662 4e-45 148.5 149.1 6 20 0.00011 0.1 13.5 0.5 1 23 219 241 219 242 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF607-201 - 662 4e-45 148.5 149.1 7 20 0.0008 0.76 10.8 2.5 1 23 247 269 247 270 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF607-201 - 662 4e-45 148.5 149.1 8 20 0.00013 0.12 13.3 1.2 1 21 275 295 275 297 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF607-201 - 662 4e-45 148.5 149.1 9 20 0.0001 0.095 13.6 0.6 1 23 331 353 331 354 0.89 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF607-201 - 662 4e-45 148.5 149.1 10 20 0.00018 0.17 12.8 0.5 1 23 359 381 359 382 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF607-201 - 662 4e-45 148.5 149.1 11 20 0.00036 0.34 11.9 2.2 1 19 387 405 387 409 0.80 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF607-201 - 662 4e-45 148.5 149.1 12 20 5.6e-05 0.053 14.4 1.5 1 23 415 437 415 438 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF607-201 - 662 4e-45 148.5 149.1 13 20 0.00017 0.16 12.9 1.5 1 23 443 465 443 466 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF607-201 - 662 4e-45 148.5 149.1 14 20 1.9e-05 0.018 15.8 0.2 1 23 471 493 471 494 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF607-201 - 662 4e-45 148.5 149.1 15 20 0.00053 0.5 11.4 0.6 1 23 499 521 499 522 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF607-201 - 662 4e-45 148.5 149.1 16 20 0.00069 0.65 11.0 0.7 1 23 527 549 527 550 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF607-201 - 662 4e-45 148.5 149.1 17 20 0.0002 0.19 12.7 1.0 1 23 555 577 555 578 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF607-201 - 662 4e-45 148.5 149.1 18 20 0.0003 0.28 12.1 2.8 1 23 583 605 583 606 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF607-201 - 662 4e-45 148.5 149.1 19 20 5.2e-05 0.049 14.5 1.8 1 23 611 633 611 634 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF607-201 - 662 4e-45 148.5 149.1 20 20 0.0017 1.6 9.7 0.9 1 23 639 661 639 662 0.85 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF607-201 - 662 2e-23 81.8 162.6 1 21 2.6e-05 0.025 14.6 2.0 2 21 80 99 80 105 0.89 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF607-201 - 662 2e-23 81.8 162.6 2 21 1.2 1.1e+03 -0.3 0.2 9 22 115 128 114 128 0.87 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF607-201 - 662 2e-23 81.8 162.6 3 21 0.00023 0.22 11.6 0.3 2 17 136 151 136 158 0.80 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF607-201 - 662 2e-23 81.8 162.6 4 21 0.00081 0.77 9.8 1.4 2 17 163 178 163 188 0.78 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF607-201 - 662 2e-23 81.8 162.6 5 21 0.00042 0.39 10.8 0.4 2 12 191 201 191 209 0.91 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF607-201 - 662 2e-23 81.8 162.6 6 21 0.0041 3.8 7.6 1.7 2 12 219 229 219 229 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF607-201 - 662 2e-23 81.8 162.6 7 21 9.4e-06 0.0089 16.0 3.1 2 24 247 269 247 272 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF607-201 - 662 2e-23 81.8 162.6 8 21 0.00095 0.89 9.6 1.7 2 20 275 293 275 297 0.85 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF607-201 - 662 2e-23 81.8 162.6 9 21 0.39 3.7e+02 1.3 0.1 1 14 302 315 302 320 0.84 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF607-201 - 662 2e-23 81.8 162.6 10 21 0.015 14 5.8 1.0 2 12 331 341 331 341 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF607-201 - 662 2e-23 81.8 162.6 11 21 0.0024 2.2 8.4 1.3 2 12 359 369 359 369 0.95 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF607-201 - 662 2e-23 81.8 162.6 12 21 0.037 35 4.5 5.8 2 12 387 397 387 408 0.90 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF607-201 - 662 2e-23 81.8 162.6 13 21 0.00044 0.41 10.7 1.9 2 12 415 425 415 425 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF607-201 - 662 2e-23 81.8 162.6 14 21 0.00052 0.49 10.5 1.6 2 24 443 465 443 468 0.88 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF607-201 - 662 2e-23 81.8 162.6 15 21 0.00045 0.43 10.6 0.3 2 12 471 481 471 494 0.89 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF607-201 - 662 2e-23 81.8 162.6 16 21 0.00059 0.56 10.3 0.5 2 20 499 517 499 523 0.82 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF607-201 - 662 2e-23 81.8 162.6 17 21 8e-06 0.0076 16.2 1.0 2 24 527 549 527 552 0.95 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF607-201 - 662 2e-23 81.8 162.6 18 21 0.00066 0.62 10.1 0.9 2 12 555 565 554 567 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF607-201 - 662 2e-23 81.8 162.6 19 21 0.03 28 4.9 1.2 2 12 583 593 583 593 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF607-201 - 662 2e-23 81.8 162.6 20 21 0.01 9.5 6.3 0.7 2 13 611 622 611 633 0.81 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF607-201 - 662 2e-23 81.8 162.6 21 21 0.3 2.8e+02 1.6 1.9 2 12 639 649 639 649 0.93 C2H2-type zinc finger Zn-ribbon_8 PF09723.10 40 ZNF607-201 - 662 9.3e-20 70.5 120.4 1 18 0.0012 1.2 9.4 1.3 6 30 80 111 79 112 0.82 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF607-201 - 662 9.3e-20 70.5 120.4 2 18 0.00016 0.15 12.2 6.3 6 35 136 173 135 178 0.75 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF607-201 - 662 9.3e-20 70.5 120.4 3 18 0.00093 0.88 9.7 7.0 6 34 163 198 161 201 0.88 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF607-201 - 662 9.3e-20 70.5 120.4 4 18 0.002 1.9 8.7 0.5 6 21 191 206 190 217 0.80 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF607-201 - 662 9.3e-20 70.5 120.4 5 18 1.5e-06 0.0014 18.7 2.2 6 37 219 257 218 259 0.91 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF607-201 - 662 9.3e-20 70.5 120.4 6 18 0.17 1.6e+02 2.5 5.8 6 17 275 291 274 311 0.71 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF607-201 - 662 9.3e-20 70.5 120.4 7 18 1.9 1.8e+03 -0.9 0.1 6 16 303 313 301 322 0.82 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF607-201 - 662 9.3e-20 70.5 120.4 8 18 4.2e-05 0.04 14.0 3.9 6 35 331 367 330 369 0.90 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF607-201 - 662 9.3e-20 70.5 120.4 9 18 6.2e-06 0.0059 16.7 2.7 6 36 359 396 358 400 0.87 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF607-201 - 662 9.3e-20 70.5 120.4 10 18 0.002 1.9 8.7 0.4 6 19 387 400 386 409 0.83 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF607-201 - 662 9.3e-20 70.5 120.4 11 18 0.0024 2.3 8.4 6.5 6 34 415 450 412 454 0.85 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF607-201 - 662 9.3e-20 70.5 120.4 12 18 0.00018 0.17 12.1 4.6 6 34 443 478 442 485 0.86 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF607-201 - 662 9.3e-20 70.5 120.4 13 18 0.0047 4.5 7.5 0.6 6 17 471 482 470 490 0.87 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF607-201 - 662 9.3e-20 70.5 120.4 14 18 7.4e-06 0.007 16.5 1.9 6 36 499 536 498 539 0.90 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF607-201 - 662 9.3e-20 70.5 120.4 15 18 0.00045 0.42 10.8 7.7 6 34 555 590 554 595 0.82 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF607-201 - 662 9.3e-20 70.5 120.4 16 18 0.0016 1.5 9.0 6.4 6 34 583 618 582 621 0.81 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF607-201 - 662 9.3e-20 70.5 120.4 17 18 0.018 17 5.6 4.9 6 34 611 646 610 651 0.80 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF607-201 - 662 9.3e-20 70.5 120.4 18 18 0.16 1.5e+02 2.6 0.3 6 16 639 649 638 659 0.82 Zinc ribbon domain zf_UBZ PF18439.1 32 ZNF607-201 - 662 4.2e-12 45.4 94.9 1 19 0.0091 8.6 6.1 0.6 3 20 80 98 78 99 0.82 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF607-201 - 662 4.2e-12 45.4 94.9 2 19 0.0027 2.6 7.7 0.1 3 20 136 154 134 154 0.77 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF607-201 - 662 4.2e-12 45.4 94.9 3 19 0.018 17 5.1 0.5 3 21 163 182 161 186 0.80 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF607-201 - 662 4.2e-12 45.4 94.9 4 19 0.0081 7.7 6.2 0.1 3 15 191 203 189 210 0.81 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF607-201 - 662 4.2e-12 45.4 94.9 5 19 0.082 78 3.0 0.2 3 12 219 228 217 232 0.87 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF607-201 - 662 4.2e-12 45.4 94.9 6 19 0.15 1.5e+02 2.1 0.2 4 12 248 256 246 261 0.84 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF607-201 - 662 4.2e-12 45.4 94.9 7 19 0.042 40 3.9 0.8 3 18 275 291 273 294 0.75 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF607-201 - 662 4.2e-12 45.4 94.9 8 19 0.00048 0.46 10.1 0.2 3 20 331 349 329 350 0.83 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF607-201 - 662 4.2e-12 45.4 94.9 9 19 0.029 27 4.4 0.1 3 14 359 370 357 378 0.82 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF607-201 - 662 4.2e-12 45.4 94.9 10 19 0.0026 2.4 7.8 0.4 3 20 387 404 385 406 0.83 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF607-201 - 662 4.2e-12 45.4 94.9 11 19 0.032 31 4.3 0.8 3 13 415 425 413 430 0.84 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF607-201 - 662 4.2e-12 45.4 94.9 12 19 0.0055 5.2 6.8 0.1 3 13 443 453 441 461 0.82 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF607-201 - 662 4.2e-12 45.4 94.9 13 19 0.0002 0.19 11.3 0.1 3 21 471 490 469 490 0.93 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF607-201 - 662 4.2e-12 45.4 94.9 14 19 0.099 93 2.7 0.2 3 12 499 508 497 512 0.89 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF607-201 - 662 4.2e-12 45.4 94.9 15 19 0.024 23 4.7 0.1 3 13 527 537 525 546 0.82 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF607-201 - 662 4.2e-12 45.4 94.9 16 19 0.0039 3.7 7.2 0.2 2 15 554 567 553 570 0.86 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF607-201 - 662 4.2e-12 45.4 94.9 17 19 0.014 13 5.5 0.6 3 14 583 594 581 598 0.84 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF607-201 - 662 4.2e-12 45.4 94.9 18 19 0.0053 5 6.8 0.3 3 17 611 626 609 630 0.80 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF607-201 - 662 4.2e-12 45.4 94.9 19 19 0.7 6.6e+02 0.0 0.1 3 13 639 649 637 655 0.79 Ubiquitin-Binding Zinc Finger XPA_N PF01286.18 32 ZNF607-201 - 662 1.1e-09 38.1 99.0 1 19 0.096 91 3.2 0.4 3 12 81 90 79 91 0.88 XPA protein N-terminal XPA_N PF01286.18 32 ZNF607-201 - 662 1.1e-09 38.1 99.0 2 19 0.03 28 4.9 0.2 3 11 137 145 135 147 0.87 XPA protein N-terminal XPA_N PF01286.18 32 ZNF607-201 - 662 1.1e-09 38.1 99.0 3 19 0.0042 4 7.6 0.1 3 15 164 176 162 181 0.88 XPA protein N-terminal XPA_N PF01286.18 32 ZNF607-201 - 662 1.1e-09 38.1 99.0 4 19 0.013 12 6.0 0.2 3 12 192 201 190 202 0.88 XPA protein N-terminal XPA_N PF01286.18 32 ZNF607-201 - 662 1.1e-09 38.1 99.0 5 19 0.14 1.3e+02 2.7 0.4 3 11 220 228 218 230 0.90 XPA protein N-terminal XPA_N PF01286.18 32 ZNF607-201 - 662 1.1e-09 38.1 99.0 6 19 0.013 12 6.0 0.7 3 12 248 257 246 259 0.87 XPA protein N-terminal XPA_N PF01286.18 32 ZNF607-201 - 662 1.1e-09 38.1 99.0 7 19 0.033 31 4.7 1.0 3 12 276 285 274 288 0.88 XPA protein N-terminal XPA_N PF01286.18 32 ZNF607-201 - 662 1.1e-09 38.1 99.0 8 19 0.0056 5.2 7.2 0.2 3 12 332 341 330 342 0.89 XPA protein N-terminal XPA_N PF01286.18 32 ZNF607-201 - 662 1.1e-09 38.1 99.0 9 19 0.091 86 3.3 0.1 3 11 360 368 358 373 0.89 XPA protein N-terminal XPA_N PF01286.18 32 ZNF607-201 - 662 1.1e-09 38.1 99.0 10 19 0.0079 7.5 6.7 0.2 3 12 388 397 386 399 0.89 XPA protein N-terminal XPA_N PF01286.18 32 ZNF607-201 - 662 1.1e-09 38.1 99.0 11 19 0.007 6.6 6.9 0.5 3 16 416 430 414 433 0.81 XPA protein N-terminal XPA_N PF01286.18 32 ZNF607-201 - 662 1.1e-09 38.1 99.0 12 19 0.0074 7 6.8 0.1 3 14 444 455 442 458 0.88 XPA protein N-terminal XPA_N PF01286.18 32 ZNF607-201 - 662 1.1e-09 38.1 99.0 13 19 0.0034 3.2 7.9 0.1 3 14 472 483 470 487 0.90 XPA protein N-terminal XPA_N PF01286.18 32 ZNF607-201 - 662 1.1e-09 38.1 99.0 14 19 0.19 1.8e+02 2.3 0.7 3 11 500 508 498 509 0.90 XPA protein N-terminal XPA_N PF01286.18 32 ZNF607-201 - 662 1.1e-09 38.1 99.0 15 19 0.013 12 6.1 0.2 3 12 528 537 526 539 0.87 XPA protein N-terminal XPA_N PF01286.18 32 ZNF607-201 - 662 1.1e-09 38.1 99.0 16 19 0.033 31 4.7 0.3 3 12 556 565 555 570 0.88 XPA protein N-terminal XPA_N PF01286.18 32 ZNF607-201 - 662 1.1e-09 38.1 99.0 17 19 0.012 12 6.1 0.2 3 18 584 600 582 601 0.80 XPA protein N-terminal XPA_N PF01286.18 32 ZNF607-201 - 662 1.1e-09 38.1 99.0 18 19 0.0025 2.4 8.3 0.2 3 14 612 623 610 624 0.90 XPA protein N-terminal XPA_N PF01286.18 32 ZNF607-201 - 662 1.1e-09 38.1 99.0 19 19 1.4 1.3e+03 -0.5 0.5 4 11 641 648 639 650 0.65 XPA protein N-terminal DUF3850 PF12961.7 77 ZNF607-201 - 662 6.6e-09 35.7 0.1 1 11 4.3 4e+03 -2.1 0.0 12 30 71 89 68 92 0.80 Domain of unknown function (DUF3850) DUF3850 PF12961.7 77 ZNF607-201 - 662 6.6e-09 35.7 0.1 2 11 0.1 96 3.1 0.0 12 31 210 229 206 245 0.85 Domain of unknown function (DUF3850) DUF3850 PF12961.7 77 ZNF607-201 - 662 6.6e-09 35.7 0.1 3 11 0.62 5.9e+02 0.6 0.0 4 31 230 257 227 263 0.79 Domain of unknown function (DUF3850) DUF3850 PF12961.7 77 ZNF607-201 - 662 6.6e-09 35.7 0.1 4 11 5 4.7e+03 -2.3 0.0 13 30 267 284 264 294 0.76 Domain of unknown function (DUF3850) DUF3850 PF12961.7 77 ZNF607-201 - 662 6.6e-09 35.7 0.1 5 11 0.079 75 3.5 0.0 12 36 294 318 288 337 0.87 Domain of unknown function (DUF3850) DUF3850 PF12961.7 77 ZNF607-201 - 662 6.6e-09 35.7 0.1 6 11 0.42 4e+02 1.2 0.0 13 39 351 377 347 395 0.79 Domain of unknown function (DUF3850) DUF3850 PF12961.7 77 ZNF607-201 - 662 6.6e-09 35.7 0.1 7 11 0.039 37 4.4 0.0 10 42 404 436 397 459 0.81 Domain of unknown function (DUF3850) DUF3850 PF12961.7 77 ZNF607-201 - 662 6.6e-09 35.7 0.1 8 11 1.2 1.2e+03 -0.3 0.0 12 32 462 482 454 489 0.82 Domain of unknown function (DUF3850) DUF3850 PF12961.7 77 ZNF607-201 - 662 6.6e-09 35.7 0.1 9 11 0.15 1.4e+02 2.6 0.0 13 31 491 509 482 518 0.85 Domain of unknown function (DUF3850) DUF3850 PF12961.7 77 ZNF607-201 - 662 6.6e-09 35.7 0.1 10 11 2.5 2.4e+03 -1.3 0.0 12 40 546 574 539 592 0.76 Domain of unknown function (DUF3850) DUF3850 PF12961.7 77 ZNF607-201 - 662 6.6e-09 35.7 0.1 11 11 0.029 27 4.9 0.0 12 37 630 655 623 659 0.85 Domain of unknown function (DUF3850) C1_4 PF07975.12 55 ZNF607-201 - 662 7.5e-09 35.7 96.8 1 15 0.0013 1.2 9.4 1.3 23 49 77 103 62 106 0.86 TFIIH C1-like domain C1_4 PF07975.12 55 ZNF607-201 - 662 7.5e-09 35.7 96.8 2 15 0.019 18 5.7 0.3 15 37 125 147 109 159 0.65 TFIIH C1-like domain C1_4 PF07975.12 55 ZNF607-201 - 662 7.5e-09 35.7 96.8 3 15 0.043 41 4.5 3.0 2 48 138 185 137 188 0.79 TFIIH C1-like domain C1_4 PF07975.12 55 ZNF607-201 - 662 7.5e-09 35.7 96.8 4 15 0.014 13 6.1 2.4 2 49 165 214 164 216 0.84 TFIIH C1-like domain C1_4 PF07975.12 55 ZNF607-201 - 662 7.5e-09 35.7 96.8 5 15 0.00021 0.2 11.9 0.4 2 49 193 242 192 244 0.84 TFIIH C1-like domain C1_4 PF07975.12 55 ZNF607-201 - 662 7.5e-09 35.7 96.8 6 15 0.069 65 3.9 2.0 2 36 249 285 248 299 0.75 TFIIH C1-like domain C1_4 PF07975.12 55 ZNF607-201 - 662 7.5e-09 35.7 96.8 7 15 0.015 14 6.0 0.2 20 48 325 353 303 356 0.74 TFIIH C1-like domain C1_4 PF07975.12 55 ZNF607-201 - 662 7.5e-09 35.7 96.8 8 15 0.0001 0.094 13.0 1.0 2 49 333 382 332 385 0.84 TFIIH C1-like domain C1_4 PF07975.12 55 ZNF607-201 - 662 7.5e-09 35.7 96.8 9 15 0.0036 3.4 8.0 4.6 1 49 388 438 388 440 0.86 TFIIH C1-like domain C1_4 PF07975.12 55 ZNF607-201 - 662 7.5e-09 35.7 96.8 10 15 0.0095 8.9 6.6 1.5 2 49 445 494 443 497 0.78 TFIIH C1-like domain C1_4 PF07975.12 55 ZNF607-201 - 662 7.5e-09 35.7 96.8 11 15 0.064 61 4.0 2.1 1 35 472 508 472 521 0.77 TFIIH C1-like domain C1_4 PF07975.12 55 ZNF607-201 - 662 7.5e-09 35.7 96.8 12 15 0.0063 6 7.2 2.8 2 46 501 547 500 551 0.71 TFIIH C1-like domain C1_4 PF07975.12 55 ZNF607-201 - 662 7.5e-09 35.7 96.8 13 15 0.0013 1.2 9.4 5.2 2 49 529 578 528 581 0.84 TFIIH C1-like domain C1_4 PF07975.12 55 ZNF607-201 - 662 7.5e-09 35.7 96.8 14 15 0.1 95 3.3 2.1 24 49 581 606 577 609 0.83 TFIIH C1-like domain C1_4 PF07975.12 55 ZNF607-201 - 662 7.5e-09 35.7 96.8 15 15 0.06 56 4.1 3.7 2 48 613 661 612 662 0.79 TFIIH C1-like domain # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF607-201.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF607-201.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF607-201.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF607-201.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF607-201.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:10:37 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZNF607-202 - 661 3.8e-121 390.6 167.5 1 21 4.1e-09 3.7e-06 27.1 1.8 5 26 69 90 66 90 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF607-202 - 661 3.8e-121 390.6 167.5 2 21 0.1 90 3.8 0.2 2 26 94 118 93 118 0.86 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF607-202 - 661 3.8e-121 390.6 167.5 3 21 6.9e-07 0.00062 20.1 0.3 1 25 121 145 121 146 0.89 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF607-202 - 661 3.8e-121 390.6 167.5 4 21 5.8e-06 0.0052 17.2 0.4 8 25 155 172 149 173 0.82 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF607-202 - 661 3.8e-121 390.6 167.5 5 21 2e-08 1.8e-05 25.0 2.9 2 25 177 200 176 200 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF607-202 - 661 3.8e-121 390.6 167.5 6 21 3.8e-11 3.4e-08 33.6 0.9 2 24 205 227 204 228 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF607-202 - 661 3.8e-121 390.6 167.5 7 21 2e-10 1.8e-07 31.3 0.7 2 25 233 256 232 257 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF607-202 - 661 3.8e-121 390.6 167.5 8 21 2.5e-10 2.2e-07 31.0 3.5 1 25 260 284 260 285 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF607-202 - 661 3.8e-121 390.6 167.5 9 21 0.054 49 4.6 0.1 2 19 289 306 288 313 0.83 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF607-202 - 661 3.8e-121 390.6 167.5 10 21 7.6e-06 0.0068 16.8 1.4 9 25 321 340 319 340 0.87 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF607-202 - 661 3.8e-121 390.6 167.5 11 21 5.2e-10 4.7e-07 29.9 1.1 2 24 345 367 344 368 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF607-202 - 661 3.8e-121 390.6 167.5 12 21 2.6e-10 2.4e-07 30.9 0.6 2 25 373 396 372 397 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF607-202 - 661 3.8e-121 390.6 167.5 13 21 3.9e-07 0.00035 20.9 6.7 2 25 401 424 400 425 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF607-202 - 661 3.8e-121 390.6 167.5 14 21 9e-10 8.1e-07 29.2 0.2 2 25 429 452 428 453 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF607-202 - 661 3.8e-121 390.6 167.5 15 21 3.1e-11 2.8e-08 33.8 1.0 2 25 457 480 456 480 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF607-202 - 661 3.8e-121 390.6 167.5 16 21 3.1e-09 2.8e-06 27.5 0.7 2 24 485 507 484 508 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF607-202 - 661 3.8e-121 390.6 167.5 17 21 3.4e-08 3.1e-05 24.2 1.4 2 26 513 537 513 537 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF607-202 - 661 3.8e-121 390.6 167.5 18 21 5.5e-08 5e-05 23.5 0.9 2 26 541 565 540 565 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF607-202 - 661 3.8e-121 390.6 167.5 19 21 3.9e-07 0.00035 20.9 4.7 4 24 571 591 568 593 0.90 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF607-202 - 661 3.8e-121 390.6 167.5 20 21 2.3e-06 0.002 18.4 0.1 2 26 597 621 596 621 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF607-202 - 661 3.8e-121 390.6 167.5 21 21 2.2e-08 2e-05 24.8 2.9 2 24 625 647 624 648 0.93 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZNF607-202 - 661 1.5e-82 267.7 159.8 1 21 7.8 7e+03 -2.1 1.0 12 23 62 73 60 73 0.77 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF607-202 - 661 1.5e-82 267.7 159.8 2 21 1.1e-06 0.00099 19.4 2.1 1 23 79 101 79 101 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF607-202 - 661 1.5e-82 267.7 159.8 3 21 0.022 20 5.9 0.3 8 21 114 127 107 128 0.83 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF607-202 - 661 1.5e-82 267.7 159.8 4 21 1.3e-07 0.00011 22.4 0.0 1 23 135 157 135 157 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF607-202 - 661 1.5e-82 267.7 159.8 5 21 4e-07 0.00036 20.8 2.1 1 23 162 184 162 184 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF607-202 - 661 1.5e-82 267.7 159.8 6 21 3.2e-06 0.0028 18.0 0.3 1 23 190 212 190 212 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF607-202 - 661 1.5e-82 267.7 159.8 7 21 3e-07 0.00027 21.2 0.4 1 23 218 240 218 240 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF607-202 - 661 1.5e-82 267.7 159.8 8 21 1.6e-06 0.0014 18.9 2.8 1 23 246 268 246 268 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF607-202 - 661 1.5e-82 267.7 159.8 9 21 3.2e-05 0.028 14.9 1.5 1 21 274 294 274 295 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF607-202 - 661 1.5e-82 267.7 159.8 10 21 3.1e-06 0.0028 18.0 0.5 1 23 330 352 330 352 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF607-202 - 661 1.5e-82 267.7 159.8 11 21 6e-08 5.3e-05 23.4 0.8 1 23 358 380 358 380 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF607-202 - 661 1.5e-82 267.7 159.8 12 21 1.3e-07 0.00012 22.4 2.9 1 23 386 408 386 408 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF607-202 - 661 1.5e-82 267.7 159.8 13 21 6e-06 0.0054 17.1 1.1 1 23 414 436 414 436 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF607-202 - 661 1.5e-82 267.7 159.8 14 21 4e-07 0.00036 20.8 1.9 1 23 442 464 442 464 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF607-202 - 661 1.5e-82 267.7 159.8 15 21 1.5e-07 0.00013 22.2 0.1 1 23 470 492 470 492 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF607-202 - 661 1.5e-82 267.7 159.8 16 21 1.2e-06 0.001 19.4 0.5 1 23 498 520 498 520 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF607-202 - 661 1.5e-82 267.7 159.8 17 21 7.8e-06 0.007 16.8 1.4 1 23 526 548 526 548 0.95 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF607-202 - 661 1.5e-82 267.7 159.8 18 21 6e-08 5.4e-05 23.4 1.0 1 23 554 576 554 576 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF607-202 - 661 1.5e-82 267.7 159.8 19 21 0.00094 0.84 10.2 3.3 1 23 582 604 582 604 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF607-202 - 661 1.5e-82 267.7 159.8 20 21 5.6e-07 0.00051 20.4 2.0 1 23 610 632 610 632 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF607-202 - 661 1.5e-82 267.7 159.8 21 21 2.1e-05 0.019 15.4 1.8 1 23 638 660 638 660 0.98 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZNF607-202 - 661 4e-45 148.6 149.1 1 20 0.00025 0.23 12.4 1.8 1 23 79 101 79 102 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF607-202 - 661 4e-45 148.6 149.1 2 20 2.2 2e+03 0.2 0.2 7 21 113 127 107 128 0.77 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF607-202 - 661 4e-45 148.6 149.1 3 20 0.00023 0.2 12.6 0.1 1 19 135 153 135 157 0.90 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF607-202 - 661 4e-45 148.6 149.1 4 20 8.9e-05 0.08 13.8 2.0 1 23 162 184 162 185 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF607-202 - 661 4e-45 148.6 149.1 5 20 2.1e-05 0.019 15.8 0.4 1 23 190 212 190 213 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF607-202 - 661 4e-45 148.6 149.1 6 20 0.00011 0.1 13.5 0.5 1 23 218 240 218 241 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF607-202 - 661 4e-45 148.6 149.1 7 20 0.00084 0.76 10.8 2.5 1 23 246 268 246 269 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF607-202 - 661 4e-45 148.6 149.1 8 20 0.00013 0.12 13.3 1.2 1 21 274 294 274 296 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF607-202 - 661 4e-45 148.6 149.1 9 20 0.00011 0.095 13.6 0.6 1 23 330 352 330 353 0.89 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF607-202 - 661 4e-45 148.6 149.1 10 20 0.00019 0.17 12.8 0.5 1 23 358 380 358 381 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF607-202 - 661 4e-45 148.6 149.1 11 20 0.00038 0.34 11.9 2.2 1 19 386 404 386 408 0.80 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF607-202 - 661 4e-45 148.6 149.1 12 20 5.9e-05 0.053 14.4 1.5 1 23 414 436 414 437 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF607-202 - 661 4e-45 148.6 149.1 13 20 0.00018 0.16 12.9 1.5 1 23 442 464 442 465 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF607-202 - 661 4e-45 148.6 149.1 14 20 2e-05 0.018 15.8 0.2 1 23 470 492 470 493 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF607-202 - 661 4e-45 148.6 149.1 15 20 0.00055 0.5 11.4 0.6 1 23 498 520 498 521 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF607-202 - 661 4e-45 148.6 149.1 16 20 0.00072 0.65 11.0 0.7 1 23 526 548 526 549 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF607-202 - 661 4e-45 148.6 149.1 17 20 0.00021 0.19 12.7 1.0 1 23 554 576 554 577 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF607-202 - 661 4e-45 148.6 149.1 18 20 0.00031 0.28 12.1 2.8 1 23 582 604 582 605 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF607-202 - 661 4e-45 148.6 149.1 19 20 5.5e-05 0.049 14.5 1.8 1 23 610 632 610 633 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF607-202 - 661 4e-45 148.6 149.1 20 20 0.0018 1.6 9.7 0.9 1 23 638 660 638 661 0.85 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF607-202 - 661 2.2e-23 81.7 162.6 1 21 2.7e-05 0.025 14.6 2.0 2 21 79 98 79 104 0.89 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF607-202 - 661 2.2e-23 81.7 162.6 2 21 1.3 1.1e+03 -0.3 0.2 9 22 114 127 113 127 0.87 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF607-202 - 661 2.2e-23 81.7 162.6 3 21 0.00025 0.22 11.6 0.3 2 17 135 150 135 157 0.80 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF607-202 - 661 2.2e-23 81.7 162.6 4 21 0.00086 0.77 9.8 1.4 2 17 162 177 162 187 0.78 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF607-202 - 661 2.2e-23 81.7 162.6 5 21 0.00044 0.39 10.8 0.4 2 12 190 200 190 208 0.91 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF607-202 - 661 2.2e-23 81.7 162.6 6 21 0.0043 3.8 7.6 1.7 2 12 218 228 218 228 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF607-202 - 661 2.2e-23 81.7 162.6 7 21 9.9e-06 0.0089 16.0 3.1 2 24 246 268 246 271 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF607-202 - 661 2.2e-23 81.7 162.6 8 21 0.001 0.89 9.6 1.7 2 20 274 292 274 296 0.85 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF607-202 - 661 2.2e-23 81.7 162.6 9 21 0.41 3.7e+02 1.3 0.1 1 14 301 314 301 319 0.84 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF607-202 - 661 2.2e-23 81.7 162.6 10 21 0.016 14 5.8 1.0 2 12 330 340 330 340 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF607-202 - 661 2.2e-23 81.7 162.6 11 21 0.0025 2.2 8.4 1.3 2 12 358 368 358 368 0.95 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF607-202 - 661 2.2e-23 81.7 162.6 12 21 0.039 35 4.5 5.8 2 12 386 396 386 407 0.90 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF607-202 - 661 2.2e-23 81.7 162.6 13 21 0.00046 0.41 10.7 1.9 2 12 414 424 414 424 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF607-202 - 661 2.2e-23 81.7 162.6 14 21 0.00055 0.49 10.5 1.6 2 24 442 464 442 467 0.88 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF607-202 - 661 2.2e-23 81.7 162.6 15 21 0.00048 0.43 10.6 0.3 2 12 470 480 470 493 0.89 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF607-202 - 661 2.2e-23 81.7 162.6 16 21 0.00062 0.56 10.3 0.5 2 20 498 516 498 522 0.82 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF607-202 - 661 2.2e-23 81.7 162.6 17 21 8.4e-06 0.0076 16.2 1.0 2 24 526 548 526 551 0.95 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF607-202 - 661 2.2e-23 81.7 162.6 18 21 0.00069 0.62 10.1 0.9 2 12 554 564 553 566 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF607-202 - 661 2.2e-23 81.7 162.6 19 21 0.031 28 4.9 1.2 2 12 582 592 582 592 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF607-202 - 661 2.2e-23 81.7 162.6 20 21 0.011 9.5 6.4 0.7 2 13 610 621 610 632 0.81 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF607-202 - 661 2.2e-23 81.7 162.6 21 21 0.32 2.8e+02 1.6 1.9 2 12 638 648 638 648 0.93 C2H2-type zinc finger Zn-ribbon_8 PF09723.10 40 ZNF607-202 - 661 1.1e-19 70.2 120.7 1 18 0.0013 1.2 9.4 1.3 6 30 79 110 78 111 0.82 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF607-202 - 661 1.1e-19 70.2 120.7 2 18 0.00017 0.15 12.2 6.3 6 35 135 172 134 177 0.75 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF607-202 - 661 1.1e-19 70.2 120.7 3 18 0.00098 0.88 9.7 7.0 6 34 162 197 160 200 0.88 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF607-202 - 661 1.1e-19 70.2 120.7 4 18 0.0021 1.9 8.7 0.5 6 21 190 205 189 216 0.80 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF607-202 - 661 1.1e-19 70.2 120.7 5 18 1.6e-06 0.0014 18.7 2.2 6 37 218 256 217 258 0.91 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF607-202 - 661 1.1e-19 70.2 120.7 6 18 0.18 1.6e+02 2.5 5.8 6 17 274 290 273 310 0.71 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF607-202 - 661 1.1e-19 70.2 120.7 7 18 2 1.8e+03 -0.9 0.1 6 16 302 312 300 321 0.82 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF607-202 - 661 1.1e-19 70.2 120.7 8 18 4.4e-05 0.04 14.1 3.9 6 35 330 366 329 368 0.90 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF607-202 - 661 1.1e-19 70.2 120.7 9 18 6.5e-06 0.0059 16.7 2.7 6 36 358 395 357 399 0.87 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF607-202 - 661 1.1e-19 70.2 120.7 10 18 0.0021 1.9 8.7 0.4 6 19 386 399 385 408 0.83 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF607-202 - 661 1.1e-19 70.2 120.7 11 18 0.0027 2.4 8.3 6.6 6 34 414 449 411 452 0.85 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF607-202 - 661 1.1e-19 70.2 120.7 12 18 0.00028 0.25 11.5 5.0 6 34 442 477 441 480 0.86 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF607-202 - 661 1.1e-19 70.2 120.7 13 18 0.005 4.5 7.5 0.7 6 17 470 481 468 490 0.87 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF607-202 - 661 1.1e-19 70.2 120.7 14 18 7.8e-06 0.007 16.5 1.9 6 36 498 535 497 538 0.90 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF607-202 - 661 1.1e-19 70.2 120.7 15 18 0.00047 0.42 10.8 7.7 6 34 554 589 553 594 0.82 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF607-202 - 661 1.1e-19 70.2 120.7 16 18 0.0017 1.5 9.0 6.4 6 34 582 617 581 620 0.81 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF607-202 - 661 1.1e-19 70.2 120.7 17 18 0.019 17 5.6 4.9 6 34 610 645 609 650 0.80 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF607-202 - 661 1.1e-19 70.2 120.7 18 18 0.17 1.5e+02 2.6 0.3 6 16 638 648 637 658 0.82 Zinc ribbon domain zf_UBZ PF18439.1 32 ZNF607-202 - 661 4.1e-12 45.5 94.9 1 19 0.0096 8.6 6.1 0.6 3 20 79 97 77 98 0.82 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF607-202 - 661 4.1e-12 45.5 94.9 2 19 0.0029 2.6 7.7 0.1 3 20 135 153 133 153 0.77 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF607-202 - 661 4.1e-12 45.5 94.9 3 19 0.019 17 5.1 0.5 3 21 162 181 160 185 0.80 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF607-202 - 661 4.1e-12 45.5 94.9 4 19 0.0086 7.7 6.2 0.1 3 15 190 202 188 209 0.81 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF607-202 - 661 4.1e-12 45.5 94.9 5 19 0.087 78 3.0 0.2 3 12 218 227 216 231 0.87 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF607-202 - 661 4.1e-12 45.5 94.9 6 19 0.16 1.5e+02 2.1 0.2 4 12 247 255 245 260 0.84 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF607-202 - 661 4.1e-12 45.5 94.9 7 19 0.044 40 3.9 0.8 3 18 274 290 272 293 0.75 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF607-202 - 661 4.1e-12 45.5 94.9 8 19 0.00051 0.46 10.1 0.2 3 20 330 348 328 349 0.83 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF607-202 - 661 4.1e-12 45.5 94.9 9 19 0.031 27 4.4 0.1 3 14 358 369 356 377 0.82 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF607-202 - 661 4.1e-12 45.5 94.9 10 19 0.0027 2.4 7.8 0.4 3 20 386 403 384 405 0.83 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF607-202 - 661 4.1e-12 45.5 94.9 11 19 0.034 31 4.3 0.8 3 13 414 424 412 429 0.84 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF607-202 - 661 4.1e-12 45.5 94.9 12 19 0.0058 5.2 6.8 0.1 3 13 442 452 440 460 0.82 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF607-202 - 661 4.1e-12 45.5 94.9 13 19 0.00022 0.19 11.3 0.1 3 21 470 489 468 489 0.93 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF607-202 - 661 4.1e-12 45.5 94.9 14 19 0.1 93 2.7 0.2 3 12 498 507 496 511 0.89 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF607-202 - 661 4.1e-12 45.5 94.9 15 19 0.026 23 4.7 0.1 3 13 526 536 524 545 0.82 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF607-202 - 661 4.1e-12 45.5 94.9 16 19 0.0041 3.7 7.2 0.2 2 15 553 566 552 569 0.86 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF607-202 - 661 4.1e-12 45.5 94.9 17 19 0.014 13 5.5 0.6 3 14 582 593 580 597 0.84 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF607-202 - 661 4.1e-12 45.5 94.9 18 19 0.0055 5 6.8 0.3 3 17 610 625 608 629 0.80 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF607-202 - 661 4.1e-12 45.5 94.9 19 19 0.74 6.6e+02 0.0 0.1 3 13 638 648 636 654 0.79 Ubiquitin-Binding Zinc Finger XPA_N PF01286.18 32 ZNF607-202 - 661 1.1e-09 38.2 99.0 1 19 0.1 91 3.2 0.4 3 12 80 89 78 90 0.88 XPA protein N-terminal XPA_N PF01286.18 32 ZNF607-202 - 661 1.1e-09 38.2 99.0 2 19 0.031 28 4.9 0.2 3 11 136 144 134 146 0.87 XPA protein N-terminal XPA_N PF01286.18 32 ZNF607-202 - 661 1.1e-09 38.2 99.0 3 19 0.0045 4 7.6 0.1 3 15 163 175 161 180 0.88 XPA protein N-terminal XPA_N PF01286.18 32 ZNF607-202 - 661 1.1e-09 38.2 99.0 4 19 0.013 12 6.0 0.2 3 12 191 200 189 201 0.88 XPA protein N-terminal XPA_N PF01286.18 32 ZNF607-202 - 661 1.1e-09 38.2 99.0 5 19 0.15 1.3e+02 2.7 0.4 3 11 219 227 217 229 0.90 XPA protein N-terminal XPA_N PF01286.18 32 ZNF607-202 - 661 1.1e-09 38.2 99.0 6 19 0.013 12 6.0 0.7 3 12 247 256 245 258 0.87 XPA protein N-terminal XPA_N PF01286.18 32 ZNF607-202 - 661 1.1e-09 38.2 99.0 7 19 0.034 31 4.7 1.0 3 12 275 284 273 287 0.88 XPA protein N-terminal XPA_N PF01286.18 32 ZNF607-202 - 661 1.1e-09 38.2 99.0 8 19 0.0058 5.2 7.2 0.2 3 12 331 340 329 341 0.89 XPA protein N-terminal XPA_N PF01286.18 32 ZNF607-202 - 661 1.1e-09 38.2 99.0 9 19 0.096 86 3.3 0.1 3 11 359 367 357 372 0.89 XPA protein N-terminal XPA_N PF01286.18 32 ZNF607-202 - 661 1.1e-09 38.2 99.0 10 19 0.0083 7.5 6.7 0.2 3 12 387 396 385 398 0.89 XPA protein N-terminal XPA_N PF01286.18 32 ZNF607-202 - 661 1.1e-09 38.2 99.0 11 19 0.0073 6.6 6.9 0.5 3 16 415 429 413 432 0.81 XPA protein N-terminal XPA_N PF01286.18 32 ZNF607-202 - 661 1.1e-09 38.2 99.0 12 19 0.0078 7 6.8 0.1 3 14 443 454 441 457 0.88 XPA protein N-terminal XPA_N PF01286.18 32 ZNF607-202 - 661 1.1e-09 38.2 99.0 13 19 0.0035 3.2 7.9 0.1 3 14 471 482 469 486 0.90 XPA protein N-terminal XPA_N PF01286.18 32 ZNF607-202 - 661 1.1e-09 38.2 99.0 14 19 0.2 1.8e+02 2.3 0.7 3 11 499 507 497 508 0.90 XPA protein N-terminal XPA_N PF01286.18 32 ZNF607-202 - 661 1.1e-09 38.2 99.0 15 19 0.013 12 6.1 0.2 3 12 527 536 525 538 0.87 XPA protein N-terminal XPA_N PF01286.18 32 ZNF607-202 - 661 1.1e-09 38.2 99.0 16 19 0.035 31 4.7 0.3 3 12 555 564 554 569 0.88 XPA protein N-terminal XPA_N PF01286.18 32 ZNF607-202 - 661 1.1e-09 38.2 99.0 17 19 0.013 12 6.1 0.2 3 18 583 599 581 600 0.80 XPA protein N-terminal XPA_N PF01286.18 32 ZNF607-202 - 661 1.1e-09 38.2 99.0 18 19 0.0026 2.4 8.3 0.2 3 14 611 622 609 623 0.90 XPA protein N-terminal XPA_N PF01286.18 32 ZNF607-202 - 661 1.1e-09 38.2 99.0 19 19 1.5 1.3e+03 -0.5 0.5 4 11 640 647 638 649 0.65 XPA protein N-terminal DUF3850 PF12961.7 77 ZNF607-202 - 661 6.5e-09 35.7 0.1 1 11 4.5 4e+03 -2.1 0.0 12 30 70 88 67 91 0.80 Domain of unknown function (DUF3850) DUF3850 PF12961.7 77 ZNF607-202 - 661 6.5e-09 35.7 0.1 2 11 0.11 96 3.1 0.0 12 31 209 228 205 244 0.85 Domain of unknown function (DUF3850) DUF3850 PF12961.7 77 ZNF607-202 - 661 6.5e-09 35.7 0.1 3 11 0.65 5.8e+02 0.6 0.0 4 31 229 256 226 262 0.79 Domain of unknown function (DUF3850) DUF3850 PF12961.7 77 ZNF607-202 - 661 6.5e-09 35.7 0.1 4 11 5.3 4.7e+03 -2.3 0.0 13 30 266 283 263 293 0.76 Domain of unknown function (DUF3850) DUF3850 PF12961.7 77 ZNF607-202 - 661 6.5e-09 35.7 0.1 5 11 0.083 75 3.5 0.0 12 36 293 317 287 336 0.87 Domain of unknown function (DUF3850) DUF3850 PF12961.7 77 ZNF607-202 - 661 6.5e-09 35.7 0.1 6 11 0.44 4e+02 1.2 0.0 13 39 350 376 346 394 0.79 Domain of unknown function (DUF3850) DUF3850 PF12961.7 77 ZNF607-202 - 661 6.5e-09 35.7 0.1 7 11 0.041 37 4.4 0.0 10 42 403 435 396 458 0.81 Domain of unknown function (DUF3850) DUF3850 PF12961.7 77 ZNF607-202 - 661 6.5e-09 35.7 0.1 8 11 1.3 1.2e+03 -0.3 0.0 12 32 461 481 454 488 0.81 Domain of unknown function (DUF3850) DUF3850 PF12961.7 77 ZNF607-202 - 661 6.5e-09 35.7 0.1 9 11 0.17 1.5e+02 2.5 0.0 13 31 490 508 484 517 0.85 Domain of unknown function (DUF3850) DUF3850 PF12961.7 77 ZNF607-202 - 661 6.5e-09 35.7 0.1 10 11 2.6 2.4e+03 -1.3 0.0 12 40 545 573 538 591 0.76 Domain of unknown function (DUF3850) DUF3850 PF12961.7 77 ZNF607-202 - 661 6.5e-09 35.7 0.1 11 11 0.03 27 4.9 0.0 12 37 629 654 622 658 0.85 Domain of unknown function (DUF3850) C1_4 PF07975.12 55 ZNF607-202 - 661 7.3e-09 35.7 96.8 1 15 0.0013 1.2 9.4 1.3 23 49 76 102 61 105 0.86 TFIIH C1-like domain C1_4 PF07975.12 55 ZNF607-202 - 661 7.3e-09 35.7 96.8 2 15 0.02 18 5.7 0.3 15 37 124 146 108 158 0.65 TFIIH C1-like domain C1_4 PF07975.12 55 ZNF607-202 - 661 7.3e-09 35.7 96.8 3 15 0.046 41 4.5 3.0 2 48 137 184 136 187 0.79 TFIIH C1-like domain C1_4 PF07975.12 55 ZNF607-202 - 661 7.3e-09 35.7 96.8 4 15 0.014 13 6.1 2.4 2 49 164 213 163 215 0.84 TFIIH C1-like domain C1_4 PF07975.12 55 ZNF607-202 - 661 7.3e-09 35.7 96.8 5 15 0.00022 0.19 12.0 0.4 2 49 192 241 191 243 0.84 TFIIH C1-like domain C1_4 PF07975.12 55 ZNF607-202 - 661 7.3e-09 35.7 96.8 6 15 0.073 65 3.9 2.0 2 36 248 284 247 298 0.75 TFIIH C1-like domain C1_4 PF07975.12 55 ZNF607-202 - 661 7.3e-09 35.7 96.8 7 15 0.015 14 6.0 0.2 20 48 324 352 302 355 0.74 TFIIH C1-like domain C1_4 PF07975.12 55 ZNF607-202 - 661 7.3e-09 35.7 96.8 8 15 0.0001 0.094 13.0 1.0 2 49 332 381 331 384 0.84 TFIIH C1-like domain C1_4 PF07975.12 55 ZNF607-202 - 661 7.3e-09 35.7 96.8 9 15 0.0038 3.4 8.0 4.6 1 49 387 437 387 439 0.86 TFIIH C1-like domain C1_4 PF07975.12 55 ZNF607-202 - 661 7.3e-09 35.7 96.8 10 15 0.0099 8.9 6.6 1.5 2 49 444 493 442 496 0.78 TFIIH C1-like domain C1_4 PF07975.12 55 ZNF607-202 - 661 7.3e-09 35.7 96.8 11 15 0.067 60 4.0 2.1 1 35 471 507 471 520 0.77 TFIIH C1-like domain C1_4 PF07975.12 55 ZNF607-202 - 661 7.3e-09 35.7 96.8 12 15 0.0066 5.9 7.2 2.8 2 46 500 546 499 550 0.71 TFIIH C1-like domain C1_4 PF07975.12 55 ZNF607-202 - 661 7.3e-09 35.7 96.8 13 15 0.0014 1.2 9.4 5.2 2 49 528 577 527 580 0.84 TFIIH C1-like domain C1_4 PF07975.12 55 ZNF607-202 - 661 7.3e-09 35.7 96.8 14 15 0.11 95 3.3 2.1 24 49 580 605 576 608 0.83 TFIIH C1-like domain C1_4 PF07975.12 55 ZNF607-202 - 661 7.3e-09 35.7 96.8 15 15 0.063 57 4.1 3.7 2 48 612 660 611 661 0.79 TFIIH C1-like domain # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF607-202.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF607-202.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF607-202.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF607-202.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF607-202.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:10:37 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF607-203.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF607-203.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF607-203.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF607-203.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF607-203.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:10:38 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF607-204.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF607-204.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF607-204.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF607-204.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF607-204.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:10:38 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF607-205.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF607-205.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF607-205.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF607-205.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF607-205.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:10:38 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZNF610-201 - 462 1.9e-62 205.1 60.4 1 9 1.3e-08 7.6e-06 26.1 0.4 1 25 218 242 218 243 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF610-201 - 462 1.9e-62 205.1 60.4 2 9 2.5e-10 1.5e-07 31.5 0.9 1 25 246 270 246 271 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF610-201 - 462 1.9e-62 205.1 60.4 3 9 1.5e-11 8.9e-09 35.4 1.2 1 24 274 297 274 298 0.97 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF610-201 - 462 1.9e-62 205.1 60.4 4 9 1.9e-09 1.1e-06 28.8 1.2 2 26 303 327 302 327 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF610-201 - 462 1.9e-62 205.1 60.4 5 9 8.6e-10 5e-07 29.9 0.8 1 25 330 354 330 354 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF610-201 - 462 1.9e-62 205.1 60.4 6 9 3e-07 0.00017 21.8 1.6 2 24 359 381 358 383 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF610-201 - 462 1.9e-62 205.1 60.4 7 9 1.1e-10 6.4e-08 32.7 0.1 1 25 386 410 386 411 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF610-201 - 462 1.9e-62 205.1 60.4 8 9 7.8e-11 4.5e-08 33.2 0.4 2 25 415 438 414 439 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF610-201 - 462 1.9e-62 205.1 60.4 9 9 0.04 23 5.6 0.7 1 13 442 454 442 457 0.89 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZNF610-201 - 462 3.1e-47 156.5 61.8 1 9 0.1 60 4.4 0.0 7 23 210 226 204 226 0.83 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF610-201 - 462 3.1e-47 156.5 61.8 2 9 1.5e-09 8.7e-07 29.1 1.2 1 23 232 254 232 254 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF610-201 - 462 3.1e-47 156.5 61.8 3 9 2.4e-10 1.4e-07 31.6 0.9 1 23 260 282 260 282 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF610-201 - 462 3.1e-47 156.5 61.8 4 9 5.1e-06 0.003 17.9 1.9 1 23 288 310 288 310 0.95 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF610-201 - 462 3.1e-47 156.5 61.8 5 9 9.3e-08 5.4e-05 23.4 5.1 1 23 316 338 316 338 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF610-201 - 462 3.1e-47 156.5 61.8 6 9 1.2e-07 6.8e-05 23.1 0.2 1 23 344 366 344 366 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF610-201 - 462 3.1e-47 156.5 61.8 7 9 6.2e-06 0.0036 17.7 0.4 1 23 372 394 372 394 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF610-201 - 462 3.1e-47 156.5 61.8 8 9 1.1e-07 6.6e-05 23.1 1.1 1 23 400 422 400 422 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF610-201 - 462 3.1e-47 156.5 61.8 9 9 2.4e-07 0.00014 22.1 2.0 1 23 428 450 428 450 0.98 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZNF610-201 - 462 7e-27 91.8 57.6 1 9 3.1 1.8e+03 0.3 0.0 7 23 210 226 204 227 0.76 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF610-201 - 462 7e-27 91.8 57.6 2 9 1.4e-06 0.00079 20.1 1.4 1 23 232 254 232 255 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF610-201 - 462 7e-27 91.8 57.6 3 9 7.1e-06 0.0041 17.8 0.6 1 23 260 282 260 283 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF610-201 - 462 7e-27 91.8 57.6 4 9 0.00013 0.077 13.9 1.8 1 23 288 310 288 311 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF610-201 - 462 7e-27 91.8 57.6 5 9 7.1e-05 0.041 14.7 3.4 1 23 316 338 316 339 0.97 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF610-201 - 462 7e-27 91.8 57.6 6 9 5.4e-05 0.031 15.1 0.3 1 23 344 366 344 367 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF610-201 - 462 7e-27 91.8 57.6 7 9 0.00013 0.074 13.9 0.4 1 23 372 394 372 395 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF610-201 - 462 7e-27 91.8 57.6 8 9 0.00015 0.085 13.7 0.6 1 23 400 422 400 423 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF610-201 - 462 7e-27 91.8 57.6 9 9 9.8e-06 0.0056 17.4 0.9 1 23 428 450 428 451 0.94 C2H2-type zinc finger KRAB PF01352.27 42 ZNF610-201 - 462 2e-24 85.0 0.1 1 1 7e-27 4.1e-24 84.0 0.1 2 42 24 64 23 64 0.98 KRAB box Zn-ribbon_8 PF09723.10 40 ZNF610-201 - 462 1.2e-14 54.2 42.1 1 7 0.0014 0.82 9.8 0.1 4 21 202 219 201 227 0.87 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF610-201 - 462 1.2e-14 54.2 42.1 2 7 0.0018 1.1 9.5 0.2 6 17 232 243 231 250 0.86 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF610-201 - 462 1.2e-14 54.2 42.1 3 7 2.4e-05 0.014 15.5 4.8 6 37 260 298 259 300 0.92 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF610-201 - 462 1.2e-14 54.2 42.1 4 7 0.00026 0.15 12.2 5.7 6 34 316 351 315 351 0.91 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF610-201 - 462 1.2e-14 54.2 42.1 5 7 3.6e-06 0.0021 18.1 2.3 6 38 344 383 343 385 0.82 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF610-201 - 462 1.2e-14 54.2 42.1 6 7 0.0022 1.3 9.2 4.2 6 34 400 435 399 435 0.92 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF610-201 - 462 1.2e-14 54.2 42.1 7 7 0.002 1.2 9.4 0.1 6 16 428 438 427 451 0.84 Zinc ribbon domain zf-C2H2_6 PF13912.6 27 ZNF610-201 - 462 8.4e-14 51.2 59.2 1 9 7.5 4.3e+03 -2.1 0.0 2 11 204 213 204 214 0.72 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF610-201 - 462 8.4e-14 51.2 59.2 2 9 0.00014 0.081 13.0 0.3 2 13 232 243 232 253 0.89 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF610-201 - 462 8.4e-14 51.2 59.2 3 9 9.3e-05 0.054 13.5 0.3 2 20 260 278 260 283 0.79 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF610-201 - 462 8.4e-14 51.2 59.2 4 9 0.00063 0.36 10.9 2.4 2 21 288 307 288 310 0.90 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF610-201 - 462 8.4e-14 51.2 59.2 5 9 0.0022 1.3 9.1 3.9 2 25 316 339 316 341 0.92 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF610-201 - 462 8.4e-14 51.2 59.2 6 9 0.00044 0.25 11.4 0.4 2 12 344 354 344 357 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF610-201 - 462 8.4e-14 51.2 59.2 7 9 0.00053 0.3 11.1 0.3 2 21 372 391 372 394 0.90 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF610-201 - 462 8.4e-14 51.2 59.2 8 9 0.00086 0.5 10.4 0.7 2 12 400 410 400 412 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF610-201 - 462 8.4e-14 51.2 59.2 9 9 0.05 29 4.8 3.2 2 12 428 438 428 449 0.92 C2H2-type zinc finger zf-C2H2_11 PF16622.5 29 ZNF610-201 - 462 2e-10 40.3 25.8 1 8 0.0065 3.7 7.4 0.0 5 26 232 253 229 254 0.85 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF610-201 - 462 2e-10 40.3 25.8 2 8 0.082 47 3.9 0.1 5 26 260 281 258 282 0.93 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF610-201 - 462 2e-10 40.3 25.8 3 8 0.095 55 3.6 0.4 5 23 288 306 285 310 0.72 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF610-201 - 462 2e-10 40.3 25.8 4 8 0.0034 2 8.3 0.2 5 23 316 334 313 336 0.90 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF610-201 - 462 2e-10 40.3 25.8 5 8 0.0014 0.81 9.5 0.1 5 26 344 365 341 366 0.89 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF610-201 - 462 2e-10 40.3 25.8 6 8 0.0067 3.9 7.3 0.1 5 26 372 393 369 394 0.86 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF610-201 - 462 2e-10 40.3 25.8 7 8 0.53 3.1e+02 1.3 0.0 5 26 400 421 397 422 0.86 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF610-201 - 462 2e-10 40.3 25.8 8 8 0.0003 0.18 11.6 0.2 5 26 428 449 426 450 0.94 zinc-finger C2H2-type C1_1 PF00130.22 53 ZNF610-201 - 462 5e-09 35.9 31.8 1 6 0.0016 0.92 9.4 3.6 2 36 223 267 222 269 0.80 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF610-201 - 462 5e-09 35.9 31.8 2 6 0.0039 2.2 8.2 0.4 2 21 250 269 249 282 0.83 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF610-201 - 462 5e-09 35.9 31.8 3 6 0.0063 3.7 7.5 5.8 5 38 282 325 277 328 0.83 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF610-201 - 462 5e-09 35.9 31.8 4 6 0.021 12 5.9 0.4 6 24 310 328 306 336 0.73 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF610-201 - 462 5e-09 35.9 31.8 5 6 5.1e-06 0.0029 17.4 1.5 5 41 337 384 327 384 0.84 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF610-201 - 462 5e-09 35.9 31.8 6 6 0.00073 0.43 10.5 0.6 5 38 394 437 390 444 0.84 Phorbol esters/diacylglycerol binding domain (C1 domain) # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF610-201.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF610-201.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF610-201.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF610-201.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF610-201.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:10:39 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZNF610-202 - 462 1.9e-62 205.1 60.4 1 9 1.3e-08 7.6e-06 26.1 0.4 1 25 218 242 218 243 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF610-202 - 462 1.9e-62 205.1 60.4 2 9 2.5e-10 1.5e-07 31.5 0.9 1 25 246 270 246 271 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF610-202 - 462 1.9e-62 205.1 60.4 3 9 1.5e-11 8.9e-09 35.4 1.2 1 24 274 297 274 298 0.97 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF610-202 - 462 1.9e-62 205.1 60.4 4 9 1.9e-09 1.1e-06 28.8 1.2 2 26 303 327 302 327 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF610-202 - 462 1.9e-62 205.1 60.4 5 9 8.6e-10 5e-07 29.9 0.8 1 25 330 354 330 354 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF610-202 - 462 1.9e-62 205.1 60.4 6 9 3e-07 0.00017 21.8 1.6 2 24 359 381 358 383 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF610-202 - 462 1.9e-62 205.1 60.4 7 9 1.1e-10 6.4e-08 32.7 0.1 1 25 386 410 386 411 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF610-202 - 462 1.9e-62 205.1 60.4 8 9 7.8e-11 4.5e-08 33.2 0.4 2 25 415 438 414 439 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF610-202 - 462 1.9e-62 205.1 60.4 9 9 0.04 23 5.6 0.7 1 13 442 454 442 457 0.89 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZNF610-202 - 462 3.1e-47 156.5 61.8 1 9 0.1 60 4.4 0.0 7 23 210 226 204 226 0.83 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF610-202 - 462 3.1e-47 156.5 61.8 2 9 1.5e-09 8.7e-07 29.1 1.2 1 23 232 254 232 254 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF610-202 - 462 3.1e-47 156.5 61.8 3 9 2.4e-10 1.4e-07 31.6 0.9 1 23 260 282 260 282 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF610-202 - 462 3.1e-47 156.5 61.8 4 9 5.1e-06 0.003 17.9 1.9 1 23 288 310 288 310 0.95 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF610-202 - 462 3.1e-47 156.5 61.8 5 9 9.3e-08 5.4e-05 23.4 5.1 1 23 316 338 316 338 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF610-202 - 462 3.1e-47 156.5 61.8 6 9 1.2e-07 6.8e-05 23.1 0.2 1 23 344 366 344 366 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF610-202 - 462 3.1e-47 156.5 61.8 7 9 6.2e-06 0.0036 17.7 0.4 1 23 372 394 372 394 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF610-202 - 462 3.1e-47 156.5 61.8 8 9 1.1e-07 6.6e-05 23.1 1.1 1 23 400 422 400 422 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF610-202 - 462 3.1e-47 156.5 61.8 9 9 2.4e-07 0.00014 22.1 2.0 1 23 428 450 428 450 0.98 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZNF610-202 - 462 7e-27 91.8 57.6 1 9 3.1 1.8e+03 0.3 0.0 7 23 210 226 204 227 0.76 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF610-202 - 462 7e-27 91.8 57.6 2 9 1.4e-06 0.00079 20.1 1.4 1 23 232 254 232 255 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF610-202 - 462 7e-27 91.8 57.6 3 9 7.1e-06 0.0041 17.8 0.6 1 23 260 282 260 283 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF610-202 - 462 7e-27 91.8 57.6 4 9 0.00013 0.077 13.9 1.8 1 23 288 310 288 311 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF610-202 - 462 7e-27 91.8 57.6 5 9 7.1e-05 0.041 14.7 3.4 1 23 316 338 316 339 0.97 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF610-202 - 462 7e-27 91.8 57.6 6 9 5.4e-05 0.031 15.1 0.3 1 23 344 366 344 367 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF610-202 - 462 7e-27 91.8 57.6 7 9 0.00013 0.074 13.9 0.4 1 23 372 394 372 395 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF610-202 - 462 7e-27 91.8 57.6 8 9 0.00015 0.085 13.7 0.6 1 23 400 422 400 423 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF610-202 - 462 7e-27 91.8 57.6 9 9 9.8e-06 0.0056 17.4 0.9 1 23 428 450 428 451 0.94 C2H2-type zinc finger KRAB PF01352.27 42 ZNF610-202 - 462 2e-24 85.0 0.1 1 1 7e-27 4.1e-24 84.0 0.1 2 42 24 64 23 64 0.98 KRAB box Zn-ribbon_8 PF09723.10 40 ZNF610-202 - 462 1.2e-14 54.2 42.1 1 7 0.0014 0.82 9.8 0.1 4 21 202 219 201 227 0.87 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF610-202 - 462 1.2e-14 54.2 42.1 2 7 0.0018 1.1 9.5 0.2 6 17 232 243 231 250 0.86 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF610-202 - 462 1.2e-14 54.2 42.1 3 7 2.4e-05 0.014 15.5 4.8 6 37 260 298 259 300 0.92 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF610-202 - 462 1.2e-14 54.2 42.1 4 7 0.00026 0.15 12.2 5.7 6 34 316 351 315 351 0.91 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF610-202 - 462 1.2e-14 54.2 42.1 5 7 3.6e-06 0.0021 18.1 2.3 6 38 344 383 343 385 0.82 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF610-202 - 462 1.2e-14 54.2 42.1 6 7 0.0022 1.3 9.2 4.2 6 34 400 435 399 435 0.92 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF610-202 - 462 1.2e-14 54.2 42.1 7 7 0.002 1.2 9.4 0.1 6 16 428 438 427 451 0.84 Zinc ribbon domain zf-C2H2_6 PF13912.6 27 ZNF610-202 - 462 8.4e-14 51.2 59.2 1 9 7.5 4.3e+03 -2.1 0.0 2 11 204 213 204 214 0.72 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF610-202 - 462 8.4e-14 51.2 59.2 2 9 0.00014 0.081 13.0 0.3 2 13 232 243 232 253 0.89 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF610-202 - 462 8.4e-14 51.2 59.2 3 9 9.3e-05 0.054 13.5 0.3 2 20 260 278 260 283 0.79 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF610-202 - 462 8.4e-14 51.2 59.2 4 9 0.00063 0.36 10.9 2.4 2 21 288 307 288 310 0.90 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF610-202 - 462 8.4e-14 51.2 59.2 5 9 0.0022 1.3 9.1 3.9 2 25 316 339 316 341 0.92 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF610-202 - 462 8.4e-14 51.2 59.2 6 9 0.00044 0.25 11.4 0.4 2 12 344 354 344 357 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF610-202 - 462 8.4e-14 51.2 59.2 7 9 0.00053 0.3 11.1 0.3 2 21 372 391 372 394 0.90 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF610-202 - 462 8.4e-14 51.2 59.2 8 9 0.00086 0.5 10.4 0.7 2 12 400 410 400 412 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF610-202 - 462 8.4e-14 51.2 59.2 9 9 0.05 29 4.8 3.2 2 12 428 438 428 449 0.92 C2H2-type zinc finger zf-C2H2_11 PF16622.5 29 ZNF610-202 - 462 2e-10 40.3 25.8 1 8 0.0065 3.7 7.4 0.0 5 26 232 253 229 254 0.85 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF610-202 - 462 2e-10 40.3 25.8 2 8 0.082 47 3.9 0.1 5 26 260 281 258 282 0.93 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF610-202 - 462 2e-10 40.3 25.8 3 8 0.095 55 3.6 0.4 5 23 288 306 285 310 0.72 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF610-202 - 462 2e-10 40.3 25.8 4 8 0.0034 2 8.3 0.2 5 23 316 334 313 336 0.90 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF610-202 - 462 2e-10 40.3 25.8 5 8 0.0014 0.81 9.5 0.1 5 26 344 365 341 366 0.89 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF610-202 - 462 2e-10 40.3 25.8 6 8 0.0067 3.9 7.3 0.1 5 26 372 393 369 394 0.86 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF610-202 - 462 2e-10 40.3 25.8 7 8 0.53 3.1e+02 1.3 0.0 5 26 400 421 397 422 0.86 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF610-202 - 462 2e-10 40.3 25.8 8 8 0.0003 0.18 11.6 0.2 5 26 428 449 426 450 0.94 zinc-finger C2H2-type C1_1 PF00130.22 53 ZNF610-202 - 462 5e-09 35.9 31.8 1 6 0.0016 0.92 9.4 3.6 2 36 223 267 222 269 0.80 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF610-202 - 462 5e-09 35.9 31.8 2 6 0.0039 2.2 8.2 0.4 2 21 250 269 249 282 0.83 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF610-202 - 462 5e-09 35.9 31.8 3 6 0.0063 3.7 7.5 5.8 5 38 282 325 277 328 0.83 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF610-202 - 462 5e-09 35.9 31.8 4 6 0.021 12 5.9 0.4 6 24 310 328 306 336 0.73 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF610-202 - 462 5e-09 35.9 31.8 5 6 5.1e-06 0.0029 17.4 1.5 5 41 337 384 327 384 0.84 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF610-202 - 462 5e-09 35.9 31.8 6 6 0.00073 0.43 10.5 0.6 5 38 394 437 390 444 0.84 Phorbol esters/diacylglycerol binding domain (C1 domain) # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF610-202.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF610-202.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF610-202.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF610-202.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF610-202.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:10:39 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZNF610-203 - 462 1.9e-62 205.1 60.4 1 9 1.3e-08 7.6e-06 26.1 0.4 1 25 218 242 218 243 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF610-203 - 462 1.9e-62 205.1 60.4 2 9 2.5e-10 1.5e-07 31.5 0.9 1 25 246 270 246 271 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF610-203 - 462 1.9e-62 205.1 60.4 3 9 1.5e-11 8.9e-09 35.4 1.2 1 24 274 297 274 298 0.97 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF610-203 - 462 1.9e-62 205.1 60.4 4 9 1.9e-09 1.1e-06 28.8 1.2 2 26 303 327 302 327 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF610-203 - 462 1.9e-62 205.1 60.4 5 9 8.6e-10 5e-07 29.9 0.8 1 25 330 354 330 354 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF610-203 - 462 1.9e-62 205.1 60.4 6 9 3e-07 0.00017 21.8 1.6 2 24 359 381 358 383 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF610-203 - 462 1.9e-62 205.1 60.4 7 9 1.1e-10 6.4e-08 32.7 0.1 1 25 386 410 386 411 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF610-203 - 462 1.9e-62 205.1 60.4 8 9 7.8e-11 4.5e-08 33.2 0.4 2 25 415 438 414 439 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF610-203 - 462 1.9e-62 205.1 60.4 9 9 0.04 23 5.6 0.7 1 13 442 454 442 457 0.89 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZNF610-203 - 462 3.1e-47 156.5 61.8 1 9 0.1 60 4.4 0.0 7 23 210 226 204 226 0.83 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF610-203 - 462 3.1e-47 156.5 61.8 2 9 1.5e-09 8.7e-07 29.1 1.2 1 23 232 254 232 254 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF610-203 - 462 3.1e-47 156.5 61.8 3 9 2.4e-10 1.4e-07 31.6 0.9 1 23 260 282 260 282 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF610-203 - 462 3.1e-47 156.5 61.8 4 9 5.1e-06 0.003 17.9 1.9 1 23 288 310 288 310 0.95 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF610-203 - 462 3.1e-47 156.5 61.8 5 9 9.3e-08 5.4e-05 23.4 5.1 1 23 316 338 316 338 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF610-203 - 462 3.1e-47 156.5 61.8 6 9 1.2e-07 6.8e-05 23.1 0.2 1 23 344 366 344 366 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF610-203 - 462 3.1e-47 156.5 61.8 7 9 6.2e-06 0.0036 17.7 0.4 1 23 372 394 372 394 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF610-203 - 462 3.1e-47 156.5 61.8 8 9 1.1e-07 6.6e-05 23.1 1.1 1 23 400 422 400 422 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF610-203 - 462 3.1e-47 156.5 61.8 9 9 2.4e-07 0.00014 22.1 2.0 1 23 428 450 428 450 0.98 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZNF610-203 - 462 7e-27 91.8 57.6 1 9 3.1 1.8e+03 0.3 0.0 7 23 210 226 204 227 0.76 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF610-203 - 462 7e-27 91.8 57.6 2 9 1.4e-06 0.00079 20.1 1.4 1 23 232 254 232 255 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF610-203 - 462 7e-27 91.8 57.6 3 9 7.1e-06 0.0041 17.8 0.6 1 23 260 282 260 283 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF610-203 - 462 7e-27 91.8 57.6 4 9 0.00013 0.077 13.9 1.8 1 23 288 310 288 311 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF610-203 - 462 7e-27 91.8 57.6 5 9 7.1e-05 0.041 14.7 3.4 1 23 316 338 316 339 0.97 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF610-203 - 462 7e-27 91.8 57.6 6 9 5.4e-05 0.031 15.1 0.3 1 23 344 366 344 367 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF610-203 - 462 7e-27 91.8 57.6 7 9 0.00013 0.074 13.9 0.4 1 23 372 394 372 395 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF610-203 - 462 7e-27 91.8 57.6 8 9 0.00015 0.085 13.7 0.6 1 23 400 422 400 423 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF610-203 - 462 7e-27 91.8 57.6 9 9 9.8e-06 0.0056 17.4 0.9 1 23 428 450 428 451 0.94 C2H2-type zinc finger KRAB PF01352.27 42 ZNF610-203 - 462 2e-24 85.0 0.1 1 1 7e-27 4.1e-24 84.0 0.1 2 42 24 64 23 64 0.98 KRAB box Zn-ribbon_8 PF09723.10 40 ZNF610-203 - 462 1.2e-14 54.2 42.1 1 7 0.0014 0.82 9.8 0.1 4 21 202 219 201 227 0.87 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF610-203 - 462 1.2e-14 54.2 42.1 2 7 0.0018 1.1 9.5 0.2 6 17 232 243 231 250 0.86 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF610-203 - 462 1.2e-14 54.2 42.1 3 7 2.4e-05 0.014 15.5 4.8 6 37 260 298 259 300 0.92 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF610-203 - 462 1.2e-14 54.2 42.1 4 7 0.00026 0.15 12.2 5.7 6 34 316 351 315 351 0.91 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF610-203 - 462 1.2e-14 54.2 42.1 5 7 3.6e-06 0.0021 18.1 2.3 6 38 344 383 343 385 0.82 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF610-203 - 462 1.2e-14 54.2 42.1 6 7 0.0022 1.3 9.2 4.2 6 34 400 435 399 435 0.92 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF610-203 - 462 1.2e-14 54.2 42.1 7 7 0.002 1.2 9.4 0.1 6 16 428 438 427 451 0.84 Zinc ribbon domain zf-C2H2_6 PF13912.6 27 ZNF610-203 - 462 8.4e-14 51.2 59.2 1 9 7.5 4.3e+03 -2.1 0.0 2 11 204 213 204 214 0.72 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF610-203 - 462 8.4e-14 51.2 59.2 2 9 0.00014 0.081 13.0 0.3 2 13 232 243 232 253 0.89 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF610-203 - 462 8.4e-14 51.2 59.2 3 9 9.3e-05 0.054 13.5 0.3 2 20 260 278 260 283 0.79 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF610-203 - 462 8.4e-14 51.2 59.2 4 9 0.00063 0.36 10.9 2.4 2 21 288 307 288 310 0.90 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF610-203 - 462 8.4e-14 51.2 59.2 5 9 0.0022 1.3 9.1 3.9 2 25 316 339 316 341 0.92 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF610-203 - 462 8.4e-14 51.2 59.2 6 9 0.00044 0.25 11.4 0.4 2 12 344 354 344 357 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF610-203 - 462 8.4e-14 51.2 59.2 7 9 0.00053 0.3 11.1 0.3 2 21 372 391 372 394 0.90 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF610-203 - 462 8.4e-14 51.2 59.2 8 9 0.00086 0.5 10.4 0.7 2 12 400 410 400 412 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF610-203 - 462 8.4e-14 51.2 59.2 9 9 0.05 29 4.8 3.2 2 12 428 438 428 449 0.92 C2H2-type zinc finger zf-C2H2_11 PF16622.5 29 ZNF610-203 - 462 2e-10 40.3 25.8 1 8 0.0065 3.7 7.4 0.0 5 26 232 253 229 254 0.85 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF610-203 - 462 2e-10 40.3 25.8 2 8 0.082 47 3.9 0.1 5 26 260 281 258 282 0.93 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF610-203 - 462 2e-10 40.3 25.8 3 8 0.095 55 3.6 0.4 5 23 288 306 285 310 0.72 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF610-203 - 462 2e-10 40.3 25.8 4 8 0.0034 2 8.3 0.2 5 23 316 334 313 336 0.90 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF610-203 - 462 2e-10 40.3 25.8 5 8 0.0014 0.81 9.5 0.1 5 26 344 365 341 366 0.89 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF610-203 - 462 2e-10 40.3 25.8 6 8 0.0067 3.9 7.3 0.1 5 26 372 393 369 394 0.86 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF610-203 - 462 2e-10 40.3 25.8 7 8 0.53 3.1e+02 1.3 0.0 5 26 400 421 397 422 0.86 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF610-203 - 462 2e-10 40.3 25.8 8 8 0.0003 0.18 11.6 0.2 5 26 428 449 426 450 0.94 zinc-finger C2H2-type C1_1 PF00130.22 53 ZNF610-203 - 462 5e-09 35.9 31.8 1 6 0.0016 0.92 9.4 3.6 2 36 223 267 222 269 0.80 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF610-203 - 462 5e-09 35.9 31.8 2 6 0.0039 2.2 8.2 0.4 2 21 250 269 249 282 0.83 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF610-203 - 462 5e-09 35.9 31.8 3 6 0.0063 3.7 7.5 5.8 5 38 282 325 277 328 0.83 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF610-203 - 462 5e-09 35.9 31.8 4 6 0.021 12 5.9 0.4 6 24 310 328 306 336 0.73 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF610-203 - 462 5e-09 35.9 31.8 5 6 5.1e-06 0.0029 17.4 1.5 5 41 337 384 327 384 0.84 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF610-203 - 462 5e-09 35.9 31.8 6 6 0.00073 0.43 10.5 0.6 5 38 394 437 390 444 0.84 Phorbol esters/diacylglycerol binding domain (C1 domain) # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF610-203.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF610-203.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF610-203.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF610-203.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF610-203.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:10:40 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF610-204.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF610-204.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF610-204.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF610-204.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF610-204.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:10:40 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF610-205.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF610-205.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF610-205.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF610-205.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF610-205.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:10:40 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF610-206.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF610-206.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF610-206.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF610-206.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF610-206.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:10:41 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZNF610-207 - 419 6.3e-63 206.6 60.4 1 9 1.2e-08 6.7e-06 26.3 0.4 1 25 175 199 175 200 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF610-207 - 419 6.3e-63 206.6 60.4 2 9 2.2e-10 1.3e-07 31.7 0.9 1 25 203 227 203 228 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF610-207 - 419 6.3e-63 206.6 60.4 3 9 1.4e-11 7.9e-09 35.6 1.2 1 24 231 254 231 255 0.97 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF610-207 - 419 6.3e-63 206.6 60.4 4 9 1.7e-09 9.9e-07 28.9 1.2 2 26 260 284 259 284 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF610-207 - 419 6.3e-63 206.6 60.4 5 9 7.6e-10 4.4e-07 30.0 0.8 1 25 287 311 287 311 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF610-207 - 419 6.3e-63 206.6 60.4 6 9 2.7e-07 0.00015 22.0 1.6 2 24 316 338 315 340 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF610-207 - 419 6.3e-63 206.6 60.4 7 9 9.7e-11 5.6e-08 32.9 0.1 1 25 343 367 343 368 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF610-207 - 419 6.3e-63 206.6 60.4 8 9 6.9e-11 4e-08 33.3 0.4 2 25 372 395 371 396 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF610-207 - 419 6.3e-63 206.6 60.4 9 9 0.036 21 5.8 0.7 1 13 399 411 399 414 0.89 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZNF610-207 - 419 4.3e-47 156.0 63.7 1 9 0.092 53 4.5 0.0 7 23 167 183 161 183 0.83 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF610-207 - 419 4.3e-47 156.0 63.7 2 9 1.3e-09 7.8e-07 29.2 1.2 1 23 189 211 189 211 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF610-207 - 419 4.3e-47 156.0 63.7 3 9 2.1e-10 1.2e-07 31.8 0.9 1 23 217 239 217 239 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF610-207 - 419 4.3e-47 156.0 63.7 4 9 4.5e-06 0.0026 18.1 1.9 1 23 245 267 245 267 0.95 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF610-207 - 419 4.3e-47 156.0 63.7 5 9 8.3e-08 4.8e-05 23.6 5.1 1 23 273 295 273 295 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF610-207 - 419 4.3e-47 156.0 63.7 6 9 1e-07 6.1e-05 23.3 0.2 1 23 301 323 301 323 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF610-207 - 419 4.3e-47 156.0 63.7 7 9 5.5e-06 0.0032 17.8 0.4 1 23 329 351 329 351 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF610-207 - 419 4.3e-47 156.0 63.7 8 9 1e-07 5.9e-05 23.3 1.1 1 23 357 379 357 379 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF610-207 - 419 4.3e-47 156.0 63.7 9 9 2.1e-07 0.00012 22.3 2.0 1 23 385 407 385 407 0.98 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZNF610-207 - 419 2.5e-27 93.2 57.6 1 9 2.8 1.6e+03 0.4 0.0 7 23 167 183 161 184 0.76 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF610-207 - 419 2.5e-27 93.2 57.6 2 9 1.2e-06 0.0007 20.2 1.4 1 23 189 211 189 212 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF610-207 - 419 2.5e-27 93.2 57.6 3 9 6.3e-06 0.0037 18.0 0.6 1 23 217 239 217 240 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF610-207 - 419 2.5e-27 93.2 57.6 4 9 0.00012 0.068 14.0 1.8 1 23 245 267 245 268 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF610-207 - 419 2.5e-27 93.2 57.6 5 9 6.3e-05 0.036 14.9 3.4 1 23 273 295 273 296 0.97 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF610-207 - 419 2.5e-27 93.2 57.6 6 9 4.8e-05 0.028 15.3 0.3 1 23 301 323 301 324 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF610-207 - 419 2.5e-27 93.2 57.6 7 9 0.00011 0.066 14.1 0.4 1 23 329 351 329 352 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF610-207 - 419 2.5e-27 93.2 57.6 8 9 0.00013 0.076 13.9 0.6 1 23 357 379 357 380 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF610-207 - 419 2.5e-27 93.2 57.6 9 9 8.7e-06 0.005 17.6 0.9 1 23 385 407 385 408 0.94 C2H2-type zinc finger KRAB PF01352.27 42 ZNF610-207 - 419 1.7e-24 85.2 0.1 1 1 6.2e-27 3.6e-24 84.1 0.1 2 42 24 64 23 64 0.98 KRAB box Zn-ribbon_8 PF09723.10 40 ZNF610-207 - 419 5.4e-15 55.2 42.2 1 7 0.0013 0.73 10.0 0.1 4 21 159 176 158 184 0.87 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF610-207 - 419 5.4e-15 55.2 42.2 2 7 0.0016 0.94 9.7 0.2 6 17 189 200 188 207 0.86 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF610-207 - 419 5.4e-15 55.2 42.2 3 7 2.1e-05 0.012 15.7 4.8 6 37 217 255 216 257 0.92 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF610-207 - 419 5.4e-15 55.2 42.2 4 7 0.00025 0.14 12.3 5.8 6 34 273 308 272 308 0.91 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF610-207 - 419 5.4e-15 55.2 42.2 5 7 3.1e-06 0.0018 18.4 2.3 6 38 301 340 300 342 0.82 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF610-207 - 419 5.4e-15 55.2 42.2 6 7 0.002 1.1 9.4 4.2 6 34 357 392 356 392 0.92 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF610-207 - 419 5.4e-15 55.2 42.2 7 7 0.0018 1 9.5 0.2 6 16 385 395 384 408 0.84 Zinc ribbon domain zf-C2H2_6 PF13912.6 27 ZNF610-207 - 419 2.8e-14 52.7 59.1 1 9 6.5 3.7e+03 -1.9 0.0 2 11 161 170 161 172 0.75 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF610-207 - 419 2.8e-14 52.7 59.1 2 9 0.00012 0.072 13.1 0.3 2 13 189 200 189 210 0.89 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF610-207 - 419 2.8e-14 52.7 59.1 3 9 8.3e-05 0.048 13.7 0.3 2 20 217 235 217 240 0.79 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF610-207 - 419 2.8e-14 52.7 59.1 4 9 0.00056 0.32 11.0 2.4 2 21 245 264 245 267 0.90 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF610-207 - 419 2.8e-14 52.7 59.1 5 9 0.002 1.1 9.3 3.9 2 25 273 296 273 298 0.92 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF610-207 - 419 2.8e-14 52.7 59.1 6 9 0.00039 0.23 11.5 0.4 2 12 301 311 301 314 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF610-207 - 419 2.8e-14 52.7 59.1 7 9 0.00047 0.27 11.3 0.3 2 21 329 348 329 351 0.90 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF610-207 - 419 2.8e-14 52.7 59.1 8 9 0.00077 0.44 10.6 0.7 2 12 357 367 357 369 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF610-207 - 419 2.8e-14 52.7 59.1 9 9 0.048 28 4.9 3.3 2 12 385 395 385 406 0.92 C2H2-type zinc finger zf-C2H2_11 PF16622.5 29 ZNF610-207 - 419 8.1e-11 41.5 25.8 1 8 0.0057 3.3 7.5 0.0 5 26 189 210 186 211 0.85 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF610-207 - 419 8.1e-11 41.5 25.8 2 8 0.073 42 4.0 0.1 5 26 217 238 215 239 0.93 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF610-207 - 419 8.1e-11 41.5 25.8 3 8 0.085 49 3.8 0.4 5 23 245 263 242 267 0.72 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF610-207 - 419 8.1e-11 41.5 25.8 4 8 0.0031 1.8 8.4 0.2 5 23 273 291 270 293 0.90 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF610-207 - 419 8.1e-11 41.5 25.8 5 8 0.0013 0.72 9.7 0.1 5 26 301 322 298 323 0.89 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF610-207 - 419 8.1e-11 41.5 25.8 6 8 0.006 3.5 7.5 0.1 5 26 329 350 326 351 0.87 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF610-207 - 419 8.1e-11 41.5 25.8 7 8 0.47 2.7e+02 1.4 0.0 5 26 357 378 354 379 0.87 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF610-207 - 419 8.1e-11 41.5 25.8 8 8 0.00027 0.16 11.8 0.2 5 26 385 406 383 407 0.94 zinc-finger C2H2-type C1_1 PF00130.22 53 ZNF610-207 - 419 3.9e-09 36.2 32.3 1 7 0.001 0.6 10.0 3.4 2 37 180 225 179 227 0.81 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF610-207 - 419 3.9e-09 36.2 32.3 2 7 0.0034 2 8.4 0.4 2 21 207 226 206 239 0.83 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF610-207 - 419 3.9e-09 36.2 32.3 3 7 0.0071 4.1 7.4 6.1 5 38 239 282 234 285 0.83 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF610-207 - 419 3.9e-09 36.2 32.3 4 7 0.02 11 5.9 0.5 6 24 267 285 263 292 0.73 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF610-207 - 419 3.9e-09 36.2 32.3 5 7 4.8e-06 0.0028 17.5 1.6 5 41 294 341 284 341 0.84 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF610-207 - 419 3.9e-09 36.2 32.3 6 7 0.00069 0.4 10.6 0.6 5 38 351 394 347 399 0.83 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF610-207 - 419 3.9e-09 36.2 32.3 7 7 0.058 34 4.4 0.1 6 21 380 394 375 407 0.72 Phorbol esters/diacylglycerol binding domain (C1 domain) zf-C2H2_jaz PF12171.8 27 ZNF610-207 - 419 5.7e-07 29.7 40.2 1 8 0.00056 0.32 11.3 0.1 2 22 189 209 188 209 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF610-207 - 419 5.7e-07 29.7 40.2 2 8 7.3e-05 0.042 14.1 0.3 2 22 217 237 216 237 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF610-207 - 419 5.7e-07 29.7 40.2 3 8 1.1 6.5e+02 0.8 0.2 2 12 245 255 244 264 0.79 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF610-207 - 419 5.7e-07 29.7 40.2 4 8 0.0016 0.93 9.9 2.9 2 24 273 295 272 295 0.95 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF610-207 - 419 5.7e-07 29.7 40.2 5 8 0.56 3.2e+02 1.8 0.3 2 12 301 311 300 311 0.89 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF610-207 - 419 5.7e-07 29.7 40.2 6 8 0.97 5.6e+02 1.0 0.0 2 13 329 340 328 348 0.82 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF610-207 - 419 5.7e-07 29.7 40.2 7 8 0.0013 0.73 10.2 0.2 2 22 357 377 356 377 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF610-207 - 419 5.7e-07 29.7 40.2 8 8 0.15 88 3.6 0.1 2 12 385 395 384 404 0.92 Zinc-finger double-stranded RNA-binding # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF610-207.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF610-207.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF610-207.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF610-207.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF610-207.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:10:41 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZNF610-208 - 419 6.3e-63 206.6 60.4 1 9 1.2e-08 6.7e-06 26.3 0.4 1 25 175 199 175 200 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF610-208 - 419 6.3e-63 206.6 60.4 2 9 2.2e-10 1.3e-07 31.7 0.9 1 25 203 227 203 228 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF610-208 - 419 6.3e-63 206.6 60.4 3 9 1.4e-11 7.9e-09 35.6 1.2 1 24 231 254 231 255 0.97 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF610-208 - 419 6.3e-63 206.6 60.4 4 9 1.7e-09 9.9e-07 28.9 1.2 2 26 260 284 259 284 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF610-208 - 419 6.3e-63 206.6 60.4 5 9 7.6e-10 4.4e-07 30.0 0.8 1 25 287 311 287 311 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF610-208 - 419 6.3e-63 206.6 60.4 6 9 2.7e-07 0.00015 22.0 1.6 2 24 316 338 315 340 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF610-208 - 419 6.3e-63 206.6 60.4 7 9 9.7e-11 5.6e-08 32.9 0.1 1 25 343 367 343 368 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF610-208 - 419 6.3e-63 206.6 60.4 8 9 6.9e-11 4e-08 33.3 0.4 2 25 372 395 371 396 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF610-208 - 419 6.3e-63 206.6 60.4 9 9 0.036 21 5.8 0.7 1 13 399 411 399 414 0.89 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZNF610-208 - 419 4.3e-47 156.0 63.7 1 9 0.092 53 4.5 0.0 7 23 167 183 161 183 0.83 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF610-208 - 419 4.3e-47 156.0 63.7 2 9 1.3e-09 7.8e-07 29.2 1.2 1 23 189 211 189 211 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF610-208 - 419 4.3e-47 156.0 63.7 3 9 2.1e-10 1.2e-07 31.8 0.9 1 23 217 239 217 239 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF610-208 - 419 4.3e-47 156.0 63.7 4 9 4.5e-06 0.0026 18.1 1.9 1 23 245 267 245 267 0.95 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF610-208 - 419 4.3e-47 156.0 63.7 5 9 8.3e-08 4.8e-05 23.6 5.1 1 23 273 295 273 295 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF610-208 - 419 4.3e-47 156.0 63.7 6 9 1e-07 6.1e-05 23.3 0.2 1 23 301 323 301 323 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF610-208 - 419 4.3e-47 156.0 63.7 7 9 5.5e-06 0.0032 17.8 0.4 1 23 329 351 329 351 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF610-208 - 419 4.3e-47 156.0 63.7 8 9 1e-07 5.9e-05 23.3 1.1 1 23 357 379 357 379 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF610-208 - 419 4.3e-47 156.0 63.7 9 9 2.1e-07 0.00012 22.3 2.0 1 23 385 407 385 407 0.98 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZNF610-208 - 419 2.5e-27 93.2 57.6 1 9 2.8 1.6e+03 0.4 0.0 7 23 167 183 161 184 0.76 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF610-208 - 419 2.5e-27 93.2 57.6 2 9 1.2e-06 0.0007 20.2 1.4 1 23 189 211 189 212 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF610-208 - 419 2.5e-27 93.2 57.6 3 9 6.3e-06 0.0037 18.0 0.6 1 23 217 239 217 240 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF610-208 - 419 2.5e-27 93.2 57.6 4 9 0.00012 0.068 14.0 1.8 1 23 245 267 245 268 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF610-208 - 419 2.5e-27 93.2 57.6 5 9 6.3e-05 0.036 14.9 3.4 1 23 273 295 273 296 0.97 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF610-208 - 419 2.5e-27 93.2 57.6 6 9 4.8e-05 0.028 15.3 0.3 1 23 301 323 301 324 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF610-208 - 419 2.5e-27 93.2 57.6 7 9 0.00011 0.066 14.1 0.4 1 23 329 351 329 352 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF610-208 - 419 2.5e-27 93.2 57.6 8 9 0.00013 0.076 13.9 0.6 1 23 357 379 357 380 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF610-208 - 419 2.5e-27 93.2 57.6 9 9 8.7e-06 0.005 17.6 0.9 1 23 385 407 385 408 0.94 C2H2-type zinc finger KRAB PF01352.27 42 ZNF610-208 - 419 1.7e-24 85.2 0.1 1 1 6.2e-27 3.6e-24 84.1 0.1 2 42 24 64 23 64 0.98 KRAB box Zn-ribbon_8 PF09723.10 40 ZNF610-208 - 419 5.4e-15 55.2 42.2 1 7 0.0013 0.73 10.0 0.1 4 21 159 176 158 184 0.87 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF610-208 - 419 5.4e-15 55.2 42.2 2 7 0.0016 0.94 9.7 0.2 6 17 189 200 188 207 0.86 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF610-208 - 419 5.4e-15 55.2 42.2 3 7 2.1e-05 0.012 15.7 4.8 6 37 217 255 216 257 0.92 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF610-208 - 419 5.4e-15 55.2 42.2 4 7 0.00025 0.14 12.3 5.8 6 34 273 308 272 308 0.91 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF610-208 - 419 5.4e-15 55.2 42.2 5 7 3.1e-06 0.0018 18.4 2.3 6 38 301 340 300 342 0.82 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF610-208 - 419 5.4e-15 55.2 42.2 6 7 0.002 1.1 9.4 4.2 6 34 357 392 356 392 0.92 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF610-208 - 419 5.4e-15 55.2 42.2 7 7 0.0018 1 9.5 0.2 6 16 385 395 384 408 0.84 Zinc ribbon domain zf-C2H2_6 PF13912.6 27 ZNF610-208 - 419 2.8e-14 52.7 59.1 1 9 6.5 3.7e+03 -1.9 0.0 2 11 161 170 161 172 0.75 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF610-208 - 419 2.8e-14 52.7 59.1 2 9 0.00012 0.072 13.1 0.3 2 13 189 200 189 210 0.89 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF610-208 - 419 2.8e-14 52.7 59.1 3 9 8.3e-05 0.048 13.7 0.3 2 20 217 235 217 240 0.79 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF610-208 - 419 2.8e-14 52.7 59.1 4 9 0.00056 0.32 11.0 2.4 2 21 245 264 245 267 0.90 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF610-208 - 419 2.8e-14 52.7 59.1 5 9 0.002 1.1 9.3 3.9 2 25 273 296 273 298 0.92 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF610-208 - 419 2.8e-14 52.7 59.1 6 9 0.00039 0.23 11.5 0.4 2 12 301 311 301 314 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF610-208 - 419 2.8e-14 52.7 59.1 7 9 0.00047 0.27 11.3 0.3 2 21 329 348 329 351 0.90 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF610-208 - 419 2.8e-14 52.7 59.1 8 9 0.00077 0.44 10.6 0.7 2 12 357 367 357 369 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF610-208 - 419 2.8e-14 52.7 59.1 9 9 0.048 28 4.9 3.3 2 12 385 395 385 406 0.92 C2H2-type zinc finger zf-C2H2_11 PF16622.5 29 ZNF610-208 - 419 8.1e-11 41.5 25.8 1 8 0.0057 3.3 7.5 0.0 5 26 189 210 186 211 0.85 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF610-208 - 419 8.1e-11 41.5 25.8 2 8 0.073 42 4.0 0.1 5 26 217 238 215 239 0.93 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF610-208 - 419 8.1e-11 41.5 25.8 3 8 0.085 49 3.8 0.4 5 23 245 263 242 267 0.72 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF610-208 - 419 8.1e-11 41.5 25.8 4 8 0.0031 1.8 8.4 0.2 5 23 273 291 270 293 0.90 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF610-208 - 419 8.1e-11 41.5 25.8 5 8 0.0013 0.72 9.7 0.1 5 26 301 322 298 323 0.89 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF610-208 - 419 8.1e-11 41.5 25.8 6 8 0.006 3.5 7.5 0.1 5 26 329 350 326 351 0.87 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF610-208 - 419 8.1e-11 41.5 25.8 7 8 0.47 2.7e+02 1.4 0.0 5 26 357 378 354 379 0.87 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF610-208 - 419 8.1e-11 41.5 25.8 8 8 0.00027 0.16 11.8 0.2 5 26 385 406 383 407 0.94 zinc-finger C2H2-type C1_1 PF00130.22 53 ZNF610-208 - 419 3.9e-09 36.2 32.3 1 7 0.001 0.6 10.0 3.4 2 37 180 225 179 227 0.81 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF610-208 - 419 3.9e-09 36.2 32.3 2 7 0.0034 2 8.4 0.4 2 21 207 226 206 239 0.83 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF610-208 - 419 3.9e-09 36.2 32.3 3 7 0.0071 4.1 7.4 6.1 5 38 239 282 234 285 0.83 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF610-208 - 419 3.9e-09 36.2 32.3 4 7 0.02 11 5.9 0.5 6 24 267 285 263 292 0.73 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF610-208 - 419 3.9e-09 36.2 32.3 5 7 4.8e-06 0.0028 17.5 1.6 5 41 294 341 284 341 0.84 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF610-208 - 419 3.9e-09 36.2 32.3 6 7 0.00069 0.4 10.6 0.6 5 38 351 394 347 399 0.83 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF610-208 - 419 3.9e-09 36.2 32.3 7 7 0.058 34 4.4 0.1 6 21 380 394 375 407 0.72 Phorbol esters/diacylglycerol binding domain (C1 domain) zf-C2H2_jaz PF12171.8 27 ZNF610-208 - 419 5.7e-07 29.7 40.2 1 8 0.00056 0.32 11.3 0.1 2 22 189 209 188 209 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF610-208 - 419 5.7e-07 29.7 40.2 2 8 7.3e-05 0.042 14.1 0.3 2 22 217 237 216 237 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF610-208 - 419 5.7e-07 29.7 40.2 3 8 1.1 6.5e+02 0.8 0.2 2 12 245 255 244 264 0.79 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF610-208 - 419 5.7e-07 29.7 40.2 4 8 0.0016 0.93 9.9 2.9 2 24 273 295 272 295 0.95 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF610-208 - 419 5.7e-07 29.7 40.2 5 8 0.56 3.2e+02 1.8 0.3 2 12 301 311 300 311 0.89 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF610-208 - 419 5.7e-07 29.7 40.2 6 8 0.97 5.6e+02 1.0 0.0 2 13 329 340 328 348 0.82 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF610-208 - 419 5.7e-07 29.7 40.2 7 8 0.0013 0.73 10.2 0.2 2 22 357 377 356 377 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF610-208 - 419 5.7e-07 29.7 40.2 8 8 0.15 88 3.6 0.1 2 12 385 395 384 404 0.92 Zinc-finger double-stranded RNA-binding # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF610-208.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF610-208.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF610-208.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF610-208.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF610-208.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:10:42 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZNF610-209 - 462 1.9e-62 205.1 60.4 1 9 1.3e-08 7.6e-06 26.1 0.4 1 25 218 242 218 243 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF610-209 - 462 1.9e-62 205.1 60.4 2 9 2.5e-10 1.5e-07 31.5 0.9 1 25 246 270 246 271 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF610-209 - 462 1.9e-62 205.1 60.4 3 9 1.5e-11 8.9e-09 35.4 1.2 1 24 274 297 274 298 0.97 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF610-209 - 462 1.9e-62 205.1 60.4 4 9 1.9e-09 1.1e-06 28.8 1.2 2 26 303 327 302 327 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF610-209 - 462 1.9e-62 205.1 60.4 5 9 8.6e-10 5e-07 29.9 0.8 1 25 330 354 330 354 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF610-209 - 462 1.9e-62 205.1 60.4 6 9 3e-07 0.00017 21.8 1.6 2 24 359 381 358 383 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF610-209 - 462 1.9e-62 205.1 60.4 7 9 1.1e-10 6.4e-08 32.7 0.1 1 25 386 410 386 411 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF610-209 - 462 1.9e-62 205.1 60.4 8 9 7.8e-11 4.5e-08 33.2 0.4 2 25 415 438 414 439 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF610-209 - 462 1.9e-62 205.1 60.4 9 9 0.04 23 5.6 0.7 1 13 442 454 442 457 0.89 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZNF610-209 - 462 3.1e-47 156.5 61.8 1 9 0.1 60 4.4 0.0 7 23 210 226 204 226 0.83 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF610-209 - 462 3.1e-47 156.5 61.8 2 9 1.5e-09 8.7e-07 29.1 1.2 1 23 232 254 232 254 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF610-209 - 462 3.1e-47 156.5 61.8 3 9 2.4e-10 1.4e-07 31.6 0.9 1 23 260 282 260 282 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF610-209 - 462 3.1e-47 156.5 61.8 4 9 5.1e-06 0.003 17.9 1.9 1 23 288 310 288 310 0.95 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF610-209 - 462 3.1e-47 156.5 61.8 5 9 9.3e-08 5.4e-05 23.4 5.1 1 23 316 338 316 338 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF610-209 - 462 3.1e-47 156.5 61.8 6 9 1.2e-07 6.8e-05 23.1 0.2 1 23 344 366 344 366 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF610-209 - 462 3.1e-47 156.5 61.8 7 9 6.2e-06 0.0036 17.7 0.4 1 23 372 394 372 394 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF610-209 - 462 3.1e-47 156.5 61.8 8 9 1.1e-07 6.6e-05 23.1 1.1 1 23 400 422 400 422 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF610-209 - 462 3.1e-47 156.5 61.8 9 9 2.4e-07 0.00014 22.1 2.0 1 23 428 450 428 450 0.98 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZNF610-209 - 462 7e-27 91.8 57.6 1 9 3.1 1.8e+03 0.3 0.0 7 23 210 226 204 227 0.76 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF610-209 - 462 7e-27 91.8 57.6 2 9 1.4e-06 0.00079 20.1 1.4 1 23 232 254 232 255 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF610-209 - 462 7e-27 91.8 57.6 3 9 7.1e-06 0.0041 17.8 0.6 1 23 260 282 260 283 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF610-209 - 462 7e-27 91.8 57.6 4 9 0.00013 0.077 13.9 1.8 1 23 288 310 288 311 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF610-209 - 462 7e-27 91.8 57.6 5 9 7.1e-05 0.041 14.7 3.4 1 23 316 338 316 339 0.97 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF610-209 - 462 7e-27 91.8 57.6 6 9 5.4e-05 0.031 15.1 0.3 1 23 344 366 344 367 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF610-209 - 462 7e-27 91.8 57.6 7 9 0.00013 0.074 13.9 0.4 1 23 372 394 372 395 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF610-209 - 462 7e-27 91.8 57.6 8 9 0.00015 0.085 13.7 0.6 1 23 400 422 400 423 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF610-209 - 462 7e-27 91.8 57.6 9 9 9.8e-06 0.0056 17.4 0.9 1 23 428 450 428 451 0.94 C2H2-type zinc finger KRAB PF01352.27 42 ZNF610-209 - 462 2e-24 85.0 0.1 1 1 7e-27 4.1e-24 84.0 0.1 2 42 24 64 23 64 0.98 KRAB box Zn-ribbon_8 PF09723.10 40 ZNF610-209 - 462 1.2e-14 54.2 42.1 1 7 0.0014 0.82 9.8 0.1 4 21 202 219 201 227 0.87 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF610-209 - 462 1.2e-14 54.2 42.1 2 7 0.0018 1.1 9.5 0.2 6 17 232 243 231 250 0.86 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF610-209 - 462 1.2e-14 54.2 42.1 3 7 2.4e-05 0.014 15.5 4.8 6 37 260 298 259 300 0.92 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF610-209 - 462 1.2e-14 54.2 42.1 4 7 0.00026 0.15 12.2 5.7 6 34 316 351 315 351 0.91 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF610-209 - 462 1.2e-14 54.2 42.1 5 7 3.6e-06 0.0021 18.1 2.3 6 38 344 383 343 385 0.82 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF610-209 - 462 1.2e-14 54.2 42.1 6 7 0.0022 1.3 9.2 4.2 6 34 400 435 399 435 0.92 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF610-209 - 462 1.2e-14 54.2 42.1 7 7 0.002 1.2 9.4 0.1 6 16 428 438 427 451 0.84 Zinc ribbon domain zf-C2H2_6 PF13912.6 27 ZNF610-209 - 462 8.4e-14 51.2 59.2 1 9 7.5 4.3e+03 -2.1 0.0 2 11 204 213 204 214 0.72 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF610-209 - 462 8.4e-14 51.2 59.2 2 9 0.00014 0.081 13.0 0.3 2 13 232 243 232 253 0.89 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF610-209 - 462 8.4e-14 51.2 59.2 3 9 9.3e-05 0.054 13.5 0.3 2 20 260 278 260 283 0.79 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF610-209 - 462 8.4e-14 51.2 59.2 4 9 0.00063 0.36 10.9 2.4 2 21 288 307 288 310 0.90 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF610-209 - 462 8.4e-14 51.2 59.2 5 9 0.0022 1.3 9.1 3.9 2 25 316 339 316 341 0.92 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF610-209 - 462 8.4e-14 51.2 59.2 6 9 0.00044 0.25 11.4 0.4 2 12 344 354 344 357 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF610-209 - 462 8.4e-14 51.2 59.2 7 9 0.00053 0.3 11.1 0.3 2 21 372 391 372 394 0.90 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF610-209 - 462 8.4e-14 51.2 59.2 8 9 0.00086 0.5 10.4 0.7 2 12 400 410 400 412 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF610-209 - 462 8.4e-14 51.2 59.2 9 9 0.05 29 4.8 3.2 2 12 428 438 428 449 0.92 C2H2-type zinc finger zf-C2H2_11 PF16622.5 29 ZNF610-209 - 462 2e-10 40.3 25.8 1 8 0.0065 3.7 7.4 0.0 5 26 232 253 229 254 0.85 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF610-209 - 462 2e-10 40.3 25.8 2 8 0.082 47 3.9 0.1 5 26 260 281 258 282 0.93 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF610-209 - 462 2e-10 40.3 25.8 3 8 0.095 55 3.6 0.4 5 23 288 306 285 310 0.72 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF610-209 - 462 2e-10 40.3 25.8 4 8 0.0034 2 8.3 0.2 5 23 316 334 313 336 0.90 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF610-209 - 462 2e-10 40.3 25.8 5 8 0.0014 0.81 9.5 0.1 5 26 344 365 341 366 0.89 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF610-209 - 462 2e-10 40.3 25.8 6 8 0.0067 3.9 7.3 0.1 5 26 372 393 369 394 0.86 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF610-209 - 462 2e-10 40.3 25.8 7 8 0.53 3.1e+02 1.3 0.0 5 26 400 421 397 422 0.86 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF610-209 - 462 2e-10 40.3 25.8 8 8 0.0003 0.18 11.6 0.2 5 26 428 449 426 450 0.94 zinc-finger C2H2-type C1_1 PF00130.22 53 ZNF610-209 - 462 5e-09 35.9 31.8 1 6 0.0016 0.92 9.4 3.6 2 36 223 267 222 269 0.80 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF610-209 - 462 5e-09 35.9 31.8 2 6 0.0039 2.2 8.2 0.4 2 21 250 269 249 282 0.83 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF610-209 - 462 5e-09 35.9 31.8 3 6 0.0063 3.7 7.5 5.8 5 38 282 325 277 328 0.83 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF610-209 - 462 5e-09 35.9 31.8 4 6 0.021 12 5.9 0.4 6 24 310 328 306 336 0.73 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF610-209 - 462 5e-09 35.9 31.8 5 6 5.1e-06 0.0029 17.4 1.5 5 41 337 384 327 384 0.84 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF610-209 - 462 5e-09 35.9 31.8 6 6 0.00073 0.43 10.5 0.6 5 38 394 437 390 444 0.84 Phorbol esters/diacylglycerol binding domain (C1 domain) # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF610-209.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF610-209.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF610-209.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF610-209.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF610-209.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:10:42 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZNF611-201 - 705 3.5e-94 305.4 169.0 1 19 0.26 3.7e+02 1.8 0.3 2 17 90 117 89 119 0.69 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF611-201 - 705 3.5e-94 305.4 169.0 2 19 0.045 61 4.3 0.5 8 25 224 241 221 242 0.88 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF611-201 - 705 3.5e-94 305.4 169.0 3 19 9.8e-07 0.0013 19.0 0.8 2 26 246 270 246 270 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF611-201 - 705 3.5e-94 305.4 169.0 4 19 6.1e-08 8.4e-05 22.8 5.9 5 25 277 297 274 298 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF611-201 - 705 3.5e-94 305.4 169.0 5 19 4.8e-07 0.00066 20.0 0.9 5 25 305 325 301 326 0.90 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF611-201 - 705 3.5e-94 305.4 169.0 6 19 2.1e-06 0.0029 18.0 0.7 10 25 338 353 338 354 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF611-201 - 705 3.5e-94 305.4 169.0 7 19 6.8e-10 9.4e-07 29.0 2.3 5 25 360 380 358 381 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF611-201 - 705 3.5e-94 305.4 169.0 8 19 7e-09 9.6e-06 25.8 1.8 4 25 387 408 386 408 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF611-201 - 705 3.5e-94 305.4 169.0 9 19 1.1e-08 1.5e-05 25.2 3.2 2 26 413 437 412 437 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF611-201 - 705 3.5e-94 305.4 169.0 10 19 8.2e-07 0.0011 19.3 2.7 5 25 444 464 440 464 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF611-201 - 705 3.5e-94 305.4 169.0 11 19 4.3e-07 0.00059 20.1 1.2 7 25 470 492 469 493 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF611-201 - 705 3.5e-94 305.4 169.0 12 19 1e-08 1.4e-05 25.3 0.2 5 25 500 520 496 521 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF611-201 - 705 3.5e-94 305.4 169.0 13 19 1.3e-10 1.8e-07 31.3 1.8 1 25 524 548 524 549 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF611-201 - 705 3.5e-94 305.4 169.0 14 19 3.4e-10 4.7e-07 29.9 3.6 2 26 553 577 552 577 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF611-201 - 705 3.5e-94 305.4 169.0 15 19 9.3e-08 0.00013 22.2 5.1 5 25 584 604 580 605 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF611-201 - 705 3.5e-94 305.4 169.0 16 19 4.3e-06 0.0059 17.0 6.9 5 26 612 633 610 633 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF611-201 - 705 3.5e-94 305.4 169.0 17 19 1.7e-10 2.3e-07 30.9 0.5 2 26 637 661 636 661 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF611-201 - 705 3.5e-94 305.4 169.0 18 19 2.8e-11 3.9e-08 33.4 0.7 2 25 665 688 665 689 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF611-201 - 705 3.5e-94 305.4 169.0 19 19 0.0016 2.3 8.8 3.3 1 14 692 705 692 705 0.96 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZNF611-201 - 705 2e-57 188.6 172.3 1 17 0.27 3.7e+02 1.9 0.5 7 20 237 250 231 253 0.79 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF611-201 - 705 2e-57 188.6 172.3 2 17 0.0095 13 6.5 1.6 1 16 259 274 259 277 0.86 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF611-201 - 705 2e-57 188.6 172.3 3 17 1.5e-06 0.0021 18.4 4.3 1 23 287 309 287 309 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF611-201 - 705 2e-57 188.6 172.3 4 17 0.00068 0.94 10.1 0.0 1 16 315 330 315 332 0.92 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF611-201 - 705 2e-57 188.6 172.3 5 17 2.8e-07 0.00038 20.7 1.8 1 20 343 362 343 364 0.95 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF611-201 - 705 2e-57 188.6 172.3 6 17 4.6e-08 6.3e-05 23.2 1.1 1 23 370 392 370 392 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF611-201 - 705 2e-57 188.6 172.3 7 17 5.6e-06 0.0078 16.6 1.9 1 23 398 420 398 420 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF611-201 - 705 2e-57 188.6 172.3 8 17 1.1e-05 0.015 15.7 8.1 1 23 426 448 426 448 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF611-201 - 705 2e-57 188.6 172.3 9 17 8.4e-06 0.012 16.1 0.1 1 21 454 474 454 475 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF611-201 - 705 2e-57 188.6 172.3 10 17 1.3e-07 0.00017 21.8 0.3 1 23 482 504 482 504 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF611-201 - 705 2e-57 188.6 172.3 11 17 5.6e-08 7.8e-05 22.9 0.6 1 23 510 532 510 532 0.95 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF611-201 - 705 2e-57 188.6 172.3 12 17 4.2e-05 0.058 13.9 4.4 1 23 538 560 538 560 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF611-201 - 705 2e-57 188.6 172.3 13 17 0.0002 0.28 11.7 9.3 1 23 566 588 566 588 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF611-201 - 705 2e-57 188.6 172.3 14 17 5.7e-05 0.078 13.5 8.5 1 23 594 616 594 616 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF611-201 - 705 2e-57 188.6 172.3 15 17 9.2e-06 0.013 15.9 6.1 1 23 622 644 622 644 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF611-201 - 705 2e-57 188.6 172.3 16 17 5.2e-09 7.2e-06 26.2 0.9 1 23 650 672 650 672 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF611-201 - 705 2e-57 188.6 172.3 17 17 4.3e-09 6e-06 26.4 4.4 1 23 678 700 678 700 0.99 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZNF611-201 - 705 1.7e-26 90.6 162.5 1 18 7.7 1.1e+04 -2.1 0.6 15 24 89 97 87 97 0.72 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF611-201 - 705 1.7e-26 90.6 162.5 2 18 0.11 1.5e+02 3.6 0.5 2 23 232 253 231 254 0.77 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF611-201 - 705 1.7e-26 90.6 162.5 3 18 0.16 2.2e+02 3.1 4.8 1 19 259 277 259 281 0.74 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF611-201 - 705 1.7e-26 90.6 162.5 4 18 5e-05 0.069 14.0 3.7 1 23 287 309 287 310 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF611-201 - 705 1.7e-26 90.6 162.5 5 18 0.047 65 4.8 0.0 1 16 315 330 315 332 0.84 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF611-201 - 705 1.7e-26 90.6 162.5 6 18 0.00015 0.21 12.5 1.5 1 20 343 362 343 364 0.91 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF611-201 - 705 1.7e-26 90.6 162.5 7 18 1.6e-05 0.022 15.6 0.8 1 23 370 392 370 393 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF611-201 - 705 1.7e-26 90.6 162.5 8 18 0.00098 1.3 10.0 1.5 1 23 398 420 398 421 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF611-201 - 705 1.7e-26 90.6 162.5 9 18 0.00091 1.2 10.1 5.9 1 23 426 448 426 449 0.88 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF611-201 - 705 1.7e-26 90.6 162.5 10 18 0.0083 11 7.1 0.2 1 19 454 472 454 475 0.78 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF611-201 - 705 1.7e-26 90.6 162.5 11 18 6.4e-05 0.088 13.7 0.2 1 23 482 504 482 505 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF611-201 - 705 1.7e-26 90.6 162.5 12 18 8.1e-06 0.011 16.5 0.6 1 23 510 532 510 533 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF611-201 - 705 1.7e-26 90.6 162.5 13 18 0.00031 0.43 11.6 4.0 1 23 538 560 538 561 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF611-201 - 705 1.7e-26 90.6 162.5 14 18 0.02 28 5.9 7.9 1 23 566 588 566 589 0.80 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF611-201 - 705 1.7e-26 90.6 162.5 15 18 0.00049 0.67 11.0 7.1 1 23 594 616 594 617 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF611-201 - 705 1.7e-26 90.6 162.5 16 18 0.001 1.4 10.0 4.4 1 23 622 644 622 645 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF611-201 - 705 1.7e-26 90.6 162.5 17 18 1.2e-05 0.017 16.0 0.5 1 23 650 672 650 673 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF611-201 - 705 1.7e-26 90.6 162.5 18 18 2.4e-05 0.033 15.0 3.1 1 23 678 700 678 701 0.94 C2H2-type zinc finger KRAB PF01352.27 42 ZNF611-201 - 705 4.8e-21 74.1 0.1 1 1 6.2e-24 8.5e-21 73.3 0.1 2 41 24 63 23 64 0.95 KRAB box zf-C2H2_6 PF13912.6 27 ZNF611-201 - 705 7.5e-21 73.7 137.3 1 16 0.00095 1.3 9.1 6.3 2 24 259 281 258 282 0.95 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF611-201 - 705 7.5e-21 73.7 137.3 2 16 5.3e-05 0.073 13.1 4.8 2 24 287 309 287 311 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF611-201 - 705 7.5e-21 73.7 137.3 3 16 0.0046 6.4 6.9 0.2 1 11 314 324 314 326 0.88 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF611-201 - 705 7.5e-21 73.7 137.3 4 16 0.00087 1.2 9.2 1.7 2 22 343 363 343 364 0.85 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF611-201 - 705 7.5e-21 73.7 137.3 5 16 0.00083 1.1 9.3 0.6 2 21 370 389 370 394 0.77 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF611-201 - 705 7.5e-21 73.7 137.3 6 16 0.041 56 3.9 0.1 2 11 398 407 398 419 0.91 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF611-201 - 705 7.5e-21 73.7 137.3 7 16 0.00024 0.33 11.0 0.9 2 12 426 436 425 441 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF611-201 - 705 7.5e-21 73.7 137.3 8 16 0.0012 1.7 8.8 0.4 2 11 454 463 453 465 0.92 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF611-201 - 705 7.5e-21 73.7 137.3 9 16 0.00028 0.39 10.8 0.3 2 12 482 492 482 504 0.86 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF611-201 - 705 7.5e-21 73.7 137.3 10 16 5.7e-07 0.00078 19.4 0.9 2 24 510 532 510 535 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF611-201 - 705 7.5e-21 73.7 137.3 11 16 0.005 6.9 6.8 1.9 2 11 538 547 538 560 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF611-201 - 705 7.5e-21 73.7 137.3 12 16 0.0017 2.4 8.3 2.8 2 12 566 576 566 577 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF611-201 - 705 7.5e-21 73.7 137.3 13 16 0.0012 1.7 8.7 6.0 2 24 594 616 594 619 0.88 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF611-201 - 705 7.5e-21 73.7 137.3 14 16 0.00077 1.1 9.4 3.8 2 24 622 644 622 647 0.92 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF611-201 - 705 7.5e-21 73.7 137.3 15 16 0.0016 2.2 8.4 0.4 2 12 650 660 649 662 0.90 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF611-201 - 705 7.5e-21 73.7 137.3 16 16 0.022 30 4.7 5.8 2 14 678 690 678 700 0.78 C2H2-type zinc finger zf-C2H2_jaz PF12171.8 27 ZNF611-201 - 705 8.2e-12 45.1 91.9 1 15 0.0068 9.4 6.7 0.6 1 15 258 272 258 275 0.91 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF611-201 - 705 8.2e-12 45.1 91.9 2 15 0.0016 2.3 8.6 0.6 2 18 287 303 286 307 0.85 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF611-201 - 705 8.2e-12 45.1 91.9 3 15 0.27 3.7e+02 1.6 0.1 2 12 315 325 314 331 0.83 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF611-201 - 705 8.2e-12 45.1 91.9 4 15 0.0053 7.3 7.0 1.3 2 18 343 359 342 362 0.86 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF611-201 - 705 8.2e-12 45.1 91.9 5 15 1.5e-05 0.02 15.1 0.2 2 22 370 390 369 390 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF611-201 - 705 8.2e-12 45.1 91.9 6 15 0.05 69 3.9 0.1 2 21 398 417 397 418 0.84 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF611-201 - 705 8.2e-12 45.1 91.9 7 15 0.061 84 3.6 1.8 2 17 426 441 425 444 0.86 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF611-201 - 705 8.2e-12 45.1 91.9 8 15 0.0013 1.8 8.9 0.4 2 21 454 473 453 474 0.87 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF611-201 - 705 8.2e-12 45.1 91.9 9 15 0.044 61 4.1 0.1 2 21 482 501 481 502 0.82 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF611-201 - 705 8.2e-12 45.1 91.9 10 15 2.4e-05 0.034 14.4 0.4 2 23 510 531 509 532 0.91 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF611-201 - 705 8.2e-12 45.1 91.9 11 15 0.012 16 5.9 2.3 2 20 538 556 537 558 0.78 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF611-201 - 705 8.2e-12 45.1 91.9 12 15 0.054 75 3.8 2.0 2 14 566 578 565 584 0.84 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF611-201 - 705 8.2e-12 45.1 91.9 13 15 0.0074 10 6.5 1.1 2 18 594 610 593 614 0.84 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF611-201 - 705 8.2e-12 45.1 91.9 14 15 0.00087 1.2 9.5 0.1 2 21 650 669 649 670 0.88 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF611-201 - 705 8.2e-12 45.1 91.9 15 15 0.088 1.2e+02 3.1 0.7 2 20 678 696 677 696 0.88 Zinc-finger double-stranded RNA-binding BolA PF01722.18 76 ZNF611-201 - 705 7.5e-09 35.7 34.6 1 11 5.4 7.5e+03 -2.7 0.0 54 72 100 118 89 121 0.71 BolA-like protein BolA PF01722.18 76 ZNF611-201 - 705 7.5e-09 35.7 34.6 2 11 1.1 1.6e+03 -0.5 0.1 23 50 223 250 213 254 0.79 BolA-like protein BolA PF01722.18 76 ZNF611-201 - 705 7.5e-09 35.7 34.6 3 11 1.6 2.2e+03 -1.0 0.1 18 49 248 277 228 283 0.69 BolA-like protein BolA PF01722.18 76 ZNF611-201 - 705 7.5e-09 35.7 34.6 4 11 1.5 2e+03 -0.9 0.0 26 53 282 309 266 315 0.79 BolA-like protein BolA PF01722.18 76 ZNF611-201 - 705 7.5e-09 35.7 34.6 5 11 0.17 2.4e+02 2.1 0.0 26 51 338 363 326 366 0.86 BolA-like protein BolA PF01722.18 76 ZNF611-201 - 705 7.5e-09 35.7 34.6 6 11 3.9e-05 0.054 13.8 1.8 19 55 388 422 353 426 0.87 BolA-like protein BolA PF01722.18 76 ZNF611-201 - 705 7.5e-09 35.7 34.6 7 11 0.0013 1.8 8.9 0.2 16 51 439 474 434 476 0.84 BolA-like protein BolA PF01722.18 76 ZNF611-201 - 705 7.5e-09 35.7 34.6 8 11 0.0043 6 7.2 0.1 22 53 528 560 499 562 0.85 BolA-like protein BolA PF01722.18 76 ZNF611-201 - 705 7.5e-09 35.7 34.6 9 11 0.018 24 5.3 1.8 15 52 578 615 572 618 0.86 BolA-like protein BolA PF01722.18 76 ZNF611-201 - 705 7.5e-09 35.7 34.6 10 11 0.0002 0.28 11.5 0.1 25 54 644 673 632 677 0.85 BolA-like protein BolA PF01722.18 76 ZNF611-201 - 705 7.5e-09 35.7 34.6 11 11 0.17 2.4e+02 2.1 0.3 27 53 674 700 669 701 0.83 BolA-like protein zf-met PF12874.7 25 ZNF611-201 - 705 3.7e-08 33.5 117.5 1 15 6.2e-05 0.085 13.3 1.3 1 19 259 277 259 279 0.95 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF611-201 - 705 3.7e-08 33.5 117.5 2 15 0.0037 5 7.6 1.5 1 19 287 305 287 307 0.93 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF611-201 - 705 3.7e-08 33.5 117.5 3 15 6.8 9.4e+03 -2.7 0.1 1 10 315 324 315 329 0.86 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF611-201 - 705 3.7e-08 33.5 117.5 4 15 0.021 29 5.2 1.5 1 17 343 359 343 361 0.90 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF611-201 - 705 3.7e-08 33.5 117.5 5 15 0.00017 0.23 11.9 0.5 1 21 370 390 370 393 0.91 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF611-201 - 705 3.7e-08 33.5 117.5 6 15 0.003 4.1 7.9 0.4 1 19 398 416 398 421 0.87 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF611-201 - 705 3.7e-08 33.5 117.5 7 15 0.026 35 5.0 3.7 1 19 426 444 426 444 0.94 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF611-201 - 705 3.7e-08 33.5 117.5 8 15 0.013 17 5.9 0.3 1 19 454 472 454 474 0.73 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF611-201 - 705 3.7e-08 33.5 117.5 9 15 0.13 1.8e+02 2.7 0.3 1 20 482 501 482 505 0.87 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF611-201 - 705 3.7e-08 33.5 117.5 10 15 0.00013 0.18 12.3 0.6 1 23 510 532 510 533 0.91 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF611-201 - 705 3.7e-08 33.5 117.5 11 15 0.00039 0.54 10.7 3.3 1 21 538 558 538 560 0.92 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF611-201 - 705 3.7e-08 33.5 117.5 12 15 0.13 1.8e+02 2.7 6.3 1 19 566 584 566 588 0.93 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF611-201 - 705 3.7e-08 33.5 117.5 13 15 0.0079 11 6.6 3.3 1 19 594 612 594 614 0.94 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF611-201 - 705 3.7e-08 33.5 117.5 14 15 0.0025 3.4 8.2 0.3 1 21 650 670 650 673 0.90 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF611-201 - 705 3.7e-08 33.5 117.5 15 15 0.039 53 4.4 1.3 1 19 678 696 678 699 0.96 Zinc-finger of C2H2 type Zn-ribbon_8 PF09723.10 40 ZNF611-201 - 705 1.8e-07 31.1 102.8 1 17 1.9 2.6e+03 -1.4 0.0 6 16 231 241 230 252 0.80 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF611-201 - 705 1.8e-07 31.1 102.8 2 17 0.051 71 3.6 3.0 5 20 258 273 258 285 0.77 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF611-201 - 705 1.8e-07 31.1 102.8 3 17 0.0011 1.6 8.9 0.8 6 18 287 299 286 309 0.83 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF611-201 - 705 1.8e-07 31.1 102.8 4 17 0.011 16 5.7 0.0 6 15 315 324 312 338 0.87 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF611-201 - 705 1.8e-07 31.1 102.8 5 17 0.005 6.9 6.9 6.8 6 34 343 377 342 382 0.83 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF611-201 - 705 1.8e-07 31.1 102.8 6 17 0.0021 2.9 8.1 4.6 6 34 370 405 369 408 0.79 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF611-201 - 705 1.8e-07 31.1 102.8 7 17 4.1e-05 0.056 13.6 2.0 6 35 398 434 396 438 0.89 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF611-201 - 705 1.8e-07 31.1 102.8 8 17 0.0012 1.7 8.8 0.6 6 17 426 437 424 444 0.85 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF611-201 - 705 1.8e-07 31.1 102.8 9 17 0.036 49 4.2 5.1 6 34 454 489 453 490 0.79 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF611-201 - 705 1.8e-07 31.1 102.8 10 17 0.001 1.4 9.1 5.8 6 34 482 517 481 523 0.83 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF611-201 - 705 1.8e-07 31.1 102.8 11 17 0.0057 7.8 6.7 4.8 6 34 510 545 509 548 0.88 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF611-201 - 705 1.8e-07 31.1 102.8 12 17 0.077 1.1e+02 3.1 5.7 6 34 538 573 537 576 0.82 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF611-201 - 705 1.8e-07 31.1 102.8 13 17 0.015 20 5.4 7.1 6 38 566 605 565 606 0.77 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF611-201 - 705 1.8e-07 31.1 102.8 14 17 0.0078 11 6.3 1.1 6 21 594 609 593 617 0.85 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF611-201 - 705 1.8e-07 31.1 102.8 15 17 0.026 36 4.6 5.6 6 34 622 657 621 661 0.64 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF611-201 - 705 1.8e-07 31.1 102.8 16 17 0.0014 1.9 8.7 3.0 6 35 650 686 648 690 0.81 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF611-201 - 705 1.8e-07 31.1 102.8 17 17 0.0021 3 8.1 0.5 6 18 678 690 677 699 0.81 Zinc ribbon domain # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF611-201.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF611-201.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF611-201.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF611-201.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF611-201.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:10:43 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZNF611-202 - 636 3.8e-95 308.4 169.0 1 19 0.25 3.2e+02 2.0 0.3 2 17 21 48 20 50 0.69 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF611-202 - 636 3.8e-95 308.4 169.0 2 19 0.043 55 4.4 0.5 8 25 155 172 152 173 0.88 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF611-202 - 636 3.8e-95 308.4 169.0 3 19 9.3e-07 0.0012 19.2 0.8 2 26 177 201 177 201 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF611-202 - 636 3.8e-95 308.4 169.0 4 19 5.9e-08 7.5e-05 23.0 5.9 5 25 208 228 205 229 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF611-202 - 636 3.8e-95 308.4 169.0 5 19 4.6e-07 0.00059 20.2 0.9 5 25 236 256 232 257 0.90 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF611-202 - 636 3.8e-95 308.4 169.0 6 19 2e-06 0.0026 18.1 0.7 10 25 269 284 269 285 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF611-202 - 636 3.8e-95 308.4 169.0 7 19 6.5e-10 8.3e-07 29.2 2.3 5 25 291 311 289 312 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF611-202 - 636 3.8e-95 308.4 169.0 8 19 6.7e-09 8.5e-06 26.0 1.8 4 25 318 339 317 339 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF611-202 - 636 3.8e-95 308.4 169.0 9 19 1.1e-08 1.3e-05 25.3 3.2 2 26 344 368 343 368 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF611-202 - 636 3.8e-95 308.4 169.0 10 19 7.8e-07 0.001 19.4 2.7 5 25 375 395 371 395 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF611-202 - 636 3.8e-95 308.4 169.0 11 19 4.1e-07 0.00053 20.3 1.2 7 25 401 423 400 424 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF611-202 - 636 3.8e-95 308.4 169.0 12 19 9.6e-09 1.2e-05 25.5 0.2 5 25 431 451 427 452 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF611-202 - 636 3.8e-95 308.4 169.0 13 19 1.2e-10 1.6e-07 31.4 1.8 1 25 455 479 455 480 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF611-202 - 636 3.8e-95 308.4 169.0 14 19 3.3e-10 4.2e-07 30.1 3.6 2 26 484 508 483 508 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF611-202 - 636 3.8e-95 308.4 169.0 15 19 8.9e-08 0.00011 22.4 5.1 5 25 515 535 511 536 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF611-202 - 636 3.8e-95 308.4 169.0 16 19 4.1e-06 0.0052 17.2 6.9 5 26 543 564 541 564 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF611-202 - 636 3.8e-95 308.4 169.0 17 19 1.6e-10 2.1e-07 31.1 0.5 2 26 568 592 567 592 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF611-202 - 636 3.8e-95 308.4 169.0 18 19 2.7e-11 3.5e-08 33.5 0.7 2 25 596 619 596 620 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF611-202 - 636 3.8e-95 308.4 169.0 19 19 0.0016 2 9.0 3.3 1 14 623 636 623 636 0.96 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZNF611-202 - 636 1.9e-57 188.6 175.1 1 17 0.26 3.3e+02 2.0 0.5 7 20 168 181 162 184 0.79 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF611-202 - 636 1.9e-57 188.6 175.1 2 17 0.048 61 4.3 3.9 1 16 190 205 190 212 0.88 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF611-202 - 636 1.9e-57 188.6 175.1 3 17 1.5e-06 0.0019 18.6 4.3 1 23 218 240 218 240 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF611-202 - 636 1.9e-57 188.6 175.1 4 17 0.00065 0.83 10.2 0.0 1 16 246 261 246 263 0.92 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF611-202 - 636 1.9e-57 188.6 175.1 5 17 2.6e-07 0.00034 20.9 1.8 1 20 274 293 274 295 0.95 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF611-202 - 636 1.9e-57 188.6 175.1 6 17 4.4e-08 5.6e-05 23.4 1.1 1 23 301 323 301 323 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF611-202 - 636 1.9e-57 188.6 175.1 7 17 5.4e-06 0.0069 16.8 1.9 1 23 329 351 329 351 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF611-202 - 636 1.9e-57 188.6 175.1 8 17 1.1e-05 0.014 15.9 8.1 1 23 357 379 357 379 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF611-202 - 636 1.9e-57 188.6 175.1 9 17 8e-06 0.01 16.2 0.1 1 21 385 405 385 406 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF611-202 - 636 1.9e-57 188.6 175.1 10 17 1.2e-07 0.00016 22.0 0.3 1 23 413 435 413 435 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF611-202 - 636 1.9e-57 188.6 175.1 11 17 5.4e-08 6.9e-05 23.1 0.6 1 23 441 463 441 463 0.95 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF611-202 - 636 1.9e-57 188.6 175.1 12 17 4e-05 0.052 14.0 4.4 1 23 469 491 469 491 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF611-202 - 636 1.9e-57 188.6 175.1 13 17 0.00019 0.25 11.9 9.3 1 23 497 519 497 519 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF611-202 - 636 1.9e-57 188.6 175.1 14 17 5.4e-05 0.069 13.6 8.5 1 23 525 547 525 547 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF611-202 - 636 1.9e-57 188.6 175.1 15 17 8.8e-06 0.011 16.1 6.1 1 23 553 575 553 575 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF611-202 - 636 1.9e-57 188.6 175.1 16 17 5e-09 6.4e-06 26.3 0.9 1 23 581 603 581 603 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF611-202 - 636 1.9e-57 188.6 175.1 17 17 4.1e-09 5.3e-06 26.6 4.4 1 23 609 631 609 631 0.99 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZNF611-202 - 636 1.6e-26 90.7 165.2 1 17 0.1 1.3e+02 3.8 0.5 2 23 163 184 162 185 0.77 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF611-202 - 636 1.6e-26 90.7 165.2 2 17 0.15 2e+02 3.3 4.8 1 19 190 208 190 212 0.74 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF611-202 - 636 1.6e-26 90.7 165.2 3 17 4.8e-05 0.061 14.2 3.7 1 23 218 240 218 241 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF611-202 - 636 1.6e-26 90.7 165.2 4 17 0.045 58 4.9 0.0 1 16 246 261 246 263 0.84 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF611-202 - 636 1.6e-26 90.7 165.2 5 17 0.00014 0.18 12.7 1.5 1 20 274 293 274 295 0.91 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF611-202 - 636 1.6e-26 90.7 165.2 6 17 1.5e-05 0.019 15.8 0.8 1 23 301 323 301 324 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF611-202 - 636 1.6e-26 90.7 165.2 7 17 0.00093 1.2 10.2 1.5 1 23 329 351 329 352 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF611-202 - 636 1.6e-26 90.7 165.2 8 17 0.00086 1.1 10.3 5.9 1 23 357 379 357 380 0.88 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF611-202 - 636 1.6e-26 90.7 165.2 9 17 0.0079 10 7.3 0.2 1 19 385 403 385 406 0.78 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF611-202 - 636 1.6e-26 90.7 165.2 10 17 6.1e-05 0.078 13.9 0.2 1 23 413 435 413 436 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF611-202 - 636 1.6e-26 90.7 165.2 11 17 7.7e-06 0.0099 16.7 0.6 1 23 441 463 441 464 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF611-202 - 636 1.6e-26 90.7 165.2 12 17 0.0003 0.38 11.7 4.0 1 23 469 491 469 492 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF611-202 - 636 1.6e-26 90.7 165.2 13 17 0.019 25 6.1 7.9 1 23 497 519 497 520 0.80 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF611-202 - 636 1.6e-26 90.7 165.2 14 17 0.00046 0.59 11.1 7.1 1 23 525 547 525 548 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF611-202 - 636 1.6e-26 90.7 165.2 15 17 0.00096 1.2 10.1 4.4 1 23 553 575 553 576 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF611-202 - 636 1.6e-26 90.7 165.2 16 17 1.1e-05 0.015 16.1 0.5 1 23 581 603 581 604 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF611-202 - 636 1.6e-26 90.7 165.2 17 17 2.3e-05 0.029 15.2 3.1 1 23 609 631 609 632 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF611-202 - 636 1.6e-21 75.8 137.8 1 16 0.00091 1.2 9.3 6.3 2 24 190 212 189 213 0.95 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF611-202 - 636 1.6e-21 75.8 137.8 2 16 5.1e-05 0.065 13.3 4.8 2 24 218 240 218 242 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF611-202 - 636 1.6e-21 75.8 137.8 3 16 0.0044 5.7 7.1 0.2 1 11 245 255 245 257 0.88 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF611-202 - 636 1.6e-21 75.8 137.8 4 16 0.00083 1.1 9.4 1.7 2 22 274 294 274 295 0.85 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF611-202 - 636 1.6e-21 75.8 137.8 5 16 0.00079 1 9.4 0.6 2 21 301 320 301 325 0.77 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF611-202 - 636 1.6e-21 75.8 137.8 6 16 0.039 50 4.1 0.1 2 11 329 338 329 350 0.91 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF611-202 - 636 1.6e-21 75.8 137.8 7 16 0.00023 0.29 11.2 0.9 2 12 357 367 356 372 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF611-202 - 636 1.6e-21 75.8 137.8 8 16 0.0012 1.5 8.9 0.4 2 11 385 394 384 396 0.92 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF611-202 - 636 1.6e-21 75.8 137.8 9 16 0.00027 0.35 10.9 0.3 2 12 413 423 413 435 0.86 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF611-202 - 636 1.6e-21 75.8 137.8 10 16 5.4e-07 0.00069 19.5 0.9 2 24 441 463 441 466 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF611-202 - 636 1.6e-21 75.8 137.8 11 16 0.0048 6.2 6.9 1.9 2 11 469 478 469 491 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF611-202 - 636 1.6e-21 75.8 137.8 12 16 0.0017 2.1 8.4 2.8 2 12 497 507 497 508 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF611-202 - 636 1.6e-21 75.8 137.8 13 16 0.0012 1.5 8.9 6.0 2 24 525 547 525 550 0.88 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF611-202 - 636 1.6e-21 75.8 137.8 14 16 0.00073 0.94 9.6 3.8 2 24 553 575 553 578 0.92 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF611-202 - 636 1.6e-21 75.8 137.8 15 16 0.0016 2 8.5 0.4 2 12 581 591 580 593 0.90 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF611-202 - 636 1.6e-21 75.8 137.8 16 16 0.03 39 4.4 6.3 2 14 609 621 609 631 0.78 C2H2-type zinc finger zf-C2H2_jaz PF12171.8 27 ZNF611-202 - 636 1.1e-11 44.7 94.7 1 15 0.021 27 5.2 2.2 1 15 189 203 189 207 0.91 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF611-202 - 636 1.1e-11 44.7 94.7 2 15 0.0016 2 8.8 0.6 2 18 218 234 217 238 0.85 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF611-202 - 636 1.1e-11 44.7 94.7 3 15 0.26 3.3e+02 1.7 0.1 2 12 246 256 245 262 0.83 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF611-202 - 636 1.1e-11 44.7 94.7 4 15 0.0051 6.5 7.2 1.3 2 18 274 290 273 293 0.86 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF611-202 - 636 1.1e-11 44.7 94.7 5 15 1.4e-05 0.018 15.3 0.2 2 22 301 321 300 321 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF611-202 - 636 1.1e-11 44.7 94.7 6 15 0.048 61 4.1 0.1 2 21 329 348 328 349 0.84 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF611-202 - 636 1.1e-11 44.7 94.7 7 15 0.058 74 3.8 1.8 2 17 357 372 356 375 0.86 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF611-202 - 636 1.1e-11 44.7 94.7 8 15 0.0013 1.6 9.1 0.4 2 21 385 404 384 405 0.87 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF611-202 - 636 1.1e-11 44.7 94.7 9 15 0.043 54 4.2 0.1 2 21 413 432 412 433 0.82 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF611-202 - 636 1.1e-11 44.7 94.7 10 15 2.3e-05 0.03 14.6 0.4 2 23 441 462 440 463 0.91 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF611-202 - 636 1.1e-11 44.7 94.7 11 15 0.011 14 6.1 2.3 2 20 469 487 468 489 0.78 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF611-202 - 636 1.1e-11 44.7 94.7 12 15 0.052 66 4.0 2.0 2 14 497 509 496 515 0.84 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF611-202 - 636 1.1e-11 44.7 94.7 13 15 0.0071 9.1 6.7 1.1 2 18 525 541 524 545 0.84 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF611-202 - 636 1.1e-11 44.7 94.7 14 15 0.00083 1.1 9.7 0.1 2 21 581 600 580 601 0.88 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF611-202 - 636 1.1e-11 44.7 94.7 15 15 0.085 1.1e+02 3.3 0.7 2 20 609 627 608 627 0.88 Zinc-finger double-stranded RNA-binding BolA PF01722.18 76 ZNF611-202 - 636 2.7e-09 37.2 34.7 1 11 5.2 6.6e+03 -2.5 0.0 54 72 31 49 20 52 0.71 BolA-like protein BolA PF01722.18 76 ZNF611-202 - 636 2.7e-09 37.2 34.7 2 11 1.1 1.4e+03 -0.3 0.1 23 50 154 181 144 185 0.79 BolA-like protein BolA PF01722.18 76 ZNF611-202 - 636 2.7e-09 37.2 34.7 3 11 1.5 1.9e+03 -0.8 0.1 18 49 179 208 159 216 0.70 BolA-like protein BolA PF01722.18 76 ZNF611-202 - 636 2.7e-09 37.2 34.7 4 11 1.4 1.8e+03 -0.7 0.0 26 53 213 240 197 246 0.79 BolA-like protein BolA PF01722.18 76 ZNF611-202 - 636 2.7e-09 37.2 34.7 5 11 0.17 2.1e+02 2.3 0.0 26 51 269 294 257 297 0.86 BolA-like protein BolA PF01722.18 76 ZNF611-202 - 636 2.7e-09 37.2 34.7 6 11 3.6e-05 0.046 14.0 1.8 19 55 319 353 284 357 0.87 BolA-like protein BolA PF01722.18 76 ZNF611-202 - 636 2.7e-09 37.2 34.7 7 11 0.0013 1.6 9.0 0.2 16 51 370 405 365 407 0.84 BolA-like protein BolA PF01722.18 76 ZNF611-202 - 636 2.7e-09 37.2 34.7 8 11 0.0041 5.3 7.4 0.1 22 53 459 491 430 493 0.85 BolA-like protein BolA PF01722.18 76 ZNF611-202 - 636 2.7e-09 37.2 34.7 9 11 0.017 21 5.5 1.8 15 52 509 546 503 549 0.86 BolA-like protein BolA PF01722.18 76 ZNF611-202 - 636 2.7e-09 37.2 34.7 10 11 0.00019 0.25 11.6 0.1 25 54 575 604 563 608 0.85 BolA-like protein BolA PF01722.18 76 ZNF611-202 - 636 2.7e-09 37.2 34.7 11 11 0.17 2.1e+02 2.3 0.3 27 53 605 631 600 632 0.83 BolA-like protein zf-met PF12874.7 25 ZNF611-202 - 636 6.8e-09 35.8 117.5 1 15 5.9e-05 0.076 13.4 1.3 1 19 190 208 190 210 0.95 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF611-202 - 636 6.8e-09 35.8 117.5 2 15 0.0035 4.5 7.8 1.5 1 19 218 236 218 238 0.93 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF611-202 - 636 6.8e-09 35.8 117.5 3 15 6.6 8.4e+03 -2.6 0.1 1 10 246 255 246 260 0.86 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF611-202 - 636 6.8e-09 35.8 117.5 4 15 0.02 26 5.4 1.5 1 17 274 290 274 292 0.90 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF611-202 - 636 6.8e-09 35.8 117.5 5 15 0.00016 0.2 12.1 0.5 1 21 301 321 301 324 0.91 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF611-202 - 636 6.8e-09 35.8 117.5 6 15 0.0029 3.7 8.1 0.4 1 19 329 347 329 352 0.87 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF611-202 - 636 6.8e-09 35.8 117.5 7 15 0.024 31 5.1 3.7 1 19 357 375 357 375 0.94 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF611-202 - 636 6.8e-09 35.8 117.5 8 15 0.012 15 6.1 0.3 1 19 385 403 385 405 0.73 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF611-202 - 636 6.8e-09 35.8 117.5 9 15 0.12 1.6e+02 2.9 0.3 1 20 413 432 413 436 0.87 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF611-202 - 636 6.8e-09 35.8 117.5 10 15 0.00012 0.16 12.4 0.6 1 23 441 463 441 464 0.91 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF611-202 - 636 6.8e-09 35.8 117.5 11 15 0.00038 0.48 10.9 3.3 1 21 469 489 469 491 0.92 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF611-202 - 636 6.8e-09 35.8 117.5 12 15 0.13 1.6e+02 2.8 6.3 1 19 497 515 497 519 0.93 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF611-202 - 636 6.8e-09 35.8 117.5 13 15 0.0076 9.7 6.7 3.3 1 19 525 543 525 545 0.94 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF611-202 - 636 6.8e-09 35.8 117.5 14 15 0.0024 3 8.4 0.3 1 21 581 601 581 604 0.90 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF611-202 - 636 6.8e-09 35.8 117.5 15 15 0.037 47 4.6 1.3 1 19 609 627 609 630 0.96 Zinc-finger of C2H2 type Zn-ribbon_8 PF09723.10 40 ZNF611-202 - 636 3.2e-08 33.5 102.7 1 17 1.8 2.3e+03 -1.2 0.0 6 16 162 172 161 183 0.80 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF611-202 - 636 3.2e-08 33.5 102.7 2 17 0.049 63 3.8 3.0 5 20 189 204 189 216 0.77 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF611-202 - 636 3.2e-08 33.5 102.7 3 17 0.0011 1.4 9.1 0.8 6 18 218 230 217 240 0.83 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF611-202 - 636 3.2e-08 33.5 102.7 4 17 0.011 14 5.9 0.0 6 15 246 255 243 269 0.87 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF611-202 - 636 3.2e-08 33.5 102.7 5 17 0.012 15 5.8 7.0 6 33 274 307 273 308 0.87 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF611-202 - 636 3.2e-08 33.5 102.7 6 17 0.0058 7.4 6.8 5.0 6 32 301 334 299 335 0.79 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF611-202 - 636 3.2e-08 33.5 102.7 7 17 3.7e-05 0.047 13.8 1.9 6 35 329 365 328 370 0.88 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF611-202 - 636 3.2e-08 33.5 102.7 8 17 0.0011 1.4 9.1 0.6 6 17 357 368 355 376 0.84 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF611-202 - 636 3.2e-08 33.5 102.7 9 17 0.033 42 4.4 5.1 6 34 385 420 384 421 0.79 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF611-202 - 636 3.2e-08 33.5 102.7 10 17 0.00098 1.3 9.2 5.7 6 34 413 448 412 453 0.83 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF611-202 - 636 3.2e-08 33.5 102.7 11 17 0.0051 6.5 7.0 4.8 6 34 441 476 440 479 0.88 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF611-202 - 636 3.2e-08 33.5 102.7 12 17 0.055 70 3.7 5.7 6 34 469 504 468 510 0.79 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF611-202 - 636 3.2e-08 33.5 102.7 13 17 0.013 17 5.6 7.0 6 38 497 536 496 537 0.77 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF611-202 - 636 3.2e-08 33.5 102.7 14 17 0.0073 9.3 6.5 1.0 6 21 525 540 524 548 0.85 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF611-202 - 636 3.2e-08 33.5 102.7 15 17 0.086 1.1e+02 3.0 5.9 6 18 553 565 552 586 0.73 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF611-202 - 636 3.2e-08 33.5 102.7 16 17 0.0014 1.8 8.8 3.1 6 35 581 617 579 621 0.81 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF611-202 - 636 3.2e-08 33.5 102.7 17 17 0.0021 2.6 8.2 0.5 6 18 609 621 608 630 0.81 Zinc ribbon domain # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF611-202.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF611-202.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF611-202.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF611-202.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF611-202.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:10:43 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZNF611-203 - 705 3.5e-94 305.4 169.0 1 19 0.26 3.7e+02 1.8 0.3 2 17 90 117 89 119 0.69 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF611-203 - 705 3.5e-94 305.4 169.0 2 19 0.045 61 4.3 0.5 8 25 224 241 221 242 0.88 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF611-203 - 705 3.5e-94 305.4 169.0 3 19 9.8e-07 0.0013 19.0 0.8 2 26 246 270 246 270 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF611-203 - 705 3.5e-94 305.4 169.0 4 19 6.1e-08 8.4e-05 22.8 5.9 5 25 277 297 274 298 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF611-203 - 705 3.5e-94 305.4 169.0 5 19 4.8e-07 0.00066 20.0 0.9 5 25 305 325 301 326 0.90 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF611-203 - 705 3.5e-94 305.4 169.0 6 19 2.1e-06 0.0029 18.0 0.7 10 25 338 353 338 354 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF611-203 - 705 3.5e-94 305.4 169.0 7 19 6.8e-10 9.4e-07 29.0 2.3 5 25 360 380 358 381 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF611-203 - 705 3.5e-94 305.4 169.0 8 19 7e-09 9.6e-06 25.8 1.8 4 25 387 408 386 408 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF611-203 - 705 3.5e-94 305.4 169.0 9 19 1.1e-08 1.5e-05 25.2 3.2 2 26 413 437 412 437 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF611-203 - 705 3.5e-94 305.4 169.0 10 19 8.2e-07 0.0011 19.3 2.7 5 25 444 464 440 464 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF611-203 - 705 3.5e-94 305.4 169.0 11 19 4.3e-07 0.00059 20.1 1.2 7 25 470 492 469 493 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF611-203 - 705 3.5e-94 305.4 169.0 12 19 1e-08 1.4e-05 25.3 0.2 5 25 500 520 496 521 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF611-203 - 705 3.5e-94 305.4 169.0 13 19 1.3e-10 1.8e-07 31.3 1.8 1 25 524 548 524 549 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF611-203 - 705 3.5e-94 305.4 169.0 14 19 3.4e-10 4.7e-07 29.9 3.6 2 26 553 577 552 577 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF611-203 - 705 3.5e-94 305.4 169.0 15 19 9.3e-08 0.00013 22.2 5.1 5 25 584 604 580 605 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF611-203 - 705 3.5e-94 305.4 169.0 16 19 4.3e-06 0.0059 17.0 6.9 5 26 612 633 610 633 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF611-203 - 705 3.5e-94 305.4 169.0 17 19 1.7e-10 2.3e-07 30.9 0.5 2 26 637 661 636 661 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF611-203 - 705 3.5e-94 305.4 169.0 18 19 2.8e-11 3.9e-08 33.4 0.7 2 25 665 688 665 689 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF611-203 - 705 3.5e-94 305.4 169.0 19 19 0.0016 2.3 8.8 3.3 1 14 692 705 692 705 0.96 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZNF611-203 - 705 2e-57 188.6 172.3 1 17 0.27 3.7e+02 1.9 0.5 7 20 237 250 231 253 0.79 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF611-203 - 705 2e-57 188.6 172.3 2 17 0.0095 13 6.5 1.6 1 16 259 274 259 277 0.86 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF611-203 - 705 2e-57 188.6 172.3 3 17 1.5e-06 0.0021 18.4 4.3 1 23 287 309 287 309 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF611-203 - 705 2e-57 188.6 172.3 4 17 0.00068 0.94 10.1 0.0 1 16 315 330 315 332 0.92 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF611-203 - 705 2e-57 188.6 172.3 5 17 2.8e-07 0.00038 20.7 1.8 1 20 343 362 343 364 0.95 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF611-203 - 705 2e-57 188.6 172.3 6 17 4.6e-08 6.3e-05 23.2 1.1 1 23 370 392 370 392 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF611-203 - 705 2e-57 188.6 172.3 7 17 5.6e-06 0.0078 16.6 1.9 1 23 398 420 398 420 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF611-203 - 705 2e-57 188.6 172.3 8 17 1.1e-05 0.015 15.7 8.1 1 23 426 448 426 448 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF611-203 - 705 2e-57 188.6 172.3 9 17 8.4e-06 0.012 16.1 0.1 1 21 454 474 454 475 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF611-203 - 705 2e-57 188.6 172.3 10 17 1.3e-07 0.00017 21.8 0.3 1 23 482 504 482 504 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF611-203 - 705 2e-57 188.6 172.3 11 17 5.6e-08 7.8e-05 22.9 0.6 1 23 510 532 510 532 0.95 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF611-203 - 705 2e-57 188.6 172.3 12 17 4.2e-05 0.058 13.9 4.4 1 23 538 560 538 560 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF611-203 - 705 2e-57 188.6 172.3 13 17 0.0002 0.28 11.7 9.3 1 23 566 588 566 588 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF611-203 - 705 2e-57 188.6 172.3 14 17 5.7e-05 0.078 13.5 8.5 1 23 594 616 594 616 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF611-203 - 705 2e-57 188.6 172.3 15 17 9.2e-06 0.013 15.9 6.1 1 23 622 644 622 644 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF611-203 - 705 2e-57 188.6 172.3 16 17 5.2e-09 7.2e-06 26.2 0.9 1 23 650 672 650 672 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF611-203 - 705 2e-57 188.6 172.3 17 17 4.3e-09 6e-06 26.4 4.4 1 23 678 700 678 700 0.99 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZNF611-203 - 705 1.7e-26 90.6 162.5 1 18 7.7 1.1e+04 -2.1 0.6 15 24 89 97 87 97 0.72 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF611-203 - 705 1.7e-26 90.6 162.5 2 18 0.11 1.5e+02 3.6 0.5 2 23 232 253 231 254 0.77 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF611-203 - 705 1.7e-26 90.6 162.5 3 18 0.16 2.2e+02 3.1 4.8 1 19 259 277 259 281 0.74 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF611-203 - 705 1.7e-26 90.6 162.5 4 18 5e-05 0.069 14.0 3.7 1 23 287 309 287 310 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF611-203 - 705 1.7e-26 90.6 162.5 5 18 0.047 65 4.8 0.0 1 16 315 330 315 332 0.84 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF611-203 - 705 1.7e-26 90.6 162.5 6 18 0.00015 0.21 12.5 1.5 1 20 343 362 343 364 0.91 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF611-203 - 705 1.7e-26 90.6 162.5 7 18 1.6e-05 0.022 15.6 0.8 1 23 370 392 370 393 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF611-203 - 705 1.7e-26 90.6 162.5 8 18 0.00098 1.3 10.0 1.5 1 23 398 420 398 421 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF611-203 - 705 1.7e-26 90.6 162.5 9 18 0.00091 1.2 10.1 5.9 1 23 426 448 426 449 0.88 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF611-203 - 705 1.7e-26 90.6 162.5 10 18 0.0083 11 7.1 0.2 1 19 454 472 454 475 0.78 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF611-203 - 705 1.7e-26 90.6 162.5 11 18 6.4e-05 0.088 13.7 0.2 1 23 482 504 482 505 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF611-203 - 705 1.7e-26 90.6 162.5 12 18 8.1e-06 0.011 16.5 0.6 1 23 510 532 510 533 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF611-203 - 705 1.7e-26 90.6 162.5 13 18 0.00031 0.43 11.6 4.0 1 23 538 560 538 561 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF611-203 - 705 1.7e-26 90.6 162.5 14 18 0.02 28 5.9 7.9 1 23 566 588 566 589 0.80 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF611-203 - 705 1.7e-26 90.6 162.5 15 18 0.00049 0.67 11.0 7.1 1 23 594 616 594 617 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF611-203 - 705 1.7e-26 90.6 162.5 16 18 0.001 1.4 10.0 4.4 1 23 622 644 622 645 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF611-203 - 705 1.7e-26 90.6 162.5 17 18 1.2e-05 0.017 16.0 0.5 1 23 650 672 650 673 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF611-203 - 705 1.7e-26 90.6 162.5 18 18 2.4e-05 0.033 15.0 3.1 1 23 678 700 678 701 0.94 C2H2-type zinc finger KRAB PF01352.27 42 ZNF611-203 - 705 4.8e-21 74.1 0.1 1 1 6.2e-24 8.5e-21 73.3 0.1 2 41 24 63 23 64 0.95 KRAB box zf-C2H2_6 PF13912.6 27 ZNF611-203 - 705 7.5e-21 73.7 137.3 1 16 0.00095 1.3 9.1 6.3 2 24 259 281 258 282 0.95 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF611-203 - 705 7.5e-21 73.7 137.3 2 16 5.3e-05 0.073 13.1 4.8 2 24 287 309 287 311 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF611-203 - 705 7.5e-21 73.7 137.3 3 16 0.0046 6.4 6.9 0.2 1 11 314 324 314 326 0.88 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF611-203 - 705 7.5e-21 73.7 137.3 4 16 0.00087 1.2 9.2 1.7 2 22 343 363 343 364 0.85 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF611-203 - 705 7.5e-21 73.7 137.3 5 16 0.00083 1.1 9.3 0.6 2 21 370 389 370 394 0.77 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF611-203 - 705 7.5e-21 73.7 137.3 6 16 0.041 56 3.9 0.1 2 11 398 407 398 419 0.91 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF611-203 - 705 7.5e-21 73.7 137.3 7 16 0.00024 0.33 11.0 0.9 2 12 426 436 425 441 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF611-203 - 705 7.5e-21 73.7 137.3 8 16 0.0012 1.7 8.8 0.4 2 11 454 463 453 465 0.92 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF611-203 - 705 7.5e-21 73.7 137.3 9 16 0.00028 0.39 10.8 0.3 2 12 482 492 482 504 0.86 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF611-203 - 705 7.5e-21 73.7 137.3 10 16 5.7e-07 0.00078 19.4 0.9 2 24 510 532 510 535 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF611-203 - 705 7.5e-21 73.7 137.3 11 16 0.005 6.9 6.8 1.9 2 11 538 547 538 560 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF611-203 - 705 7.5e-21 73.7 137.3 12 16 0.0017 2.4 8.3 2.8 2 12 566 576 566 577 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF611-203 - 705 7.5e-21 73.7 137.3 13 16 0.0012 1.7 8.7 6.0 2 24 594 616 594 619 0.88 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF611-203 - 705 7.5e-21 73.7 137.3 14 16 0.00077 1.1 9.4 3.8 2 24 622 644 622 647 0.92 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF611-203 - 705 7.5e-21 73.7 137.3 15 16 0.0016 2.2 8.4 0.4 2 12 650 660 649 662 0.90 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF611-203 - 705 7.5e-21 73.7 137.3 16 16 0.022 30 4.7 5.8 2 14 678 690 678 700 0.78 C2H2-type zinc finger zf-C2H2_jaz PF12171.8 27 ZNF611-203 - 705 8.2e-12 45.1 91.9 1 15 0.0068 9.4 6.7 0.6 1 15 258 272 258 275 0.91 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF611-203 - 705 8.2e-12 45.1 91.9 2 15 0.0016 2.3 8.6 0.6 2 18 287 303 286 307 0.85 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF611-203 - 705 8.2e-12 45.1 91.9 3 15 0.27 3.7e+02 1.6 0.1 2 12 315 325 314 331 0.83 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF611-203 - 705 8.2e-12 45.1 91.9 4 15 0.0053 7.3 7.0 1.3 2 18 343 359 342 362 0.86 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF611-203 - 705 8.2e-12 45.1 91.9 5 15 1.5e-05 0.02 15.1 0.2 2 22 370 390 369 390 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF611-203 - 705 8.2e-12 45.1 91.9 6 15 0.05 69 3.9 0.1 2 21 398 417 397 418 0.84 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF611-203 - 705 8.2e-12 45.1 91.9 7 15 0.061 84 3.6 1.8 2 17 426 441 425 444 0.86 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF611-203 - 705 8.2e-12 45.1 91.9 8 15 0.0013 1.8 8.9 0.4 2 21 454 473 453 474 0.87 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF611-203 - 705 8.2e-12 45.1 91.9 9 15 0.044 61 4.1 0.1 2 21 482 501 481 502 0.82 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF611-203 - 705 8.2e-12 45.1 91.9 10 15 2.4e-05 0.034 14.4 0.4 2 23 510 531 509 532 0.91 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF611-203 - 705 8.2e-12 45.1 91.9 11 15 0.012 16 5.9 2.3 2 20 538 556 537 558 0.78 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF611-203 - 705 8.2e-12 45.1 91.9 12 15 0.054 75 3.8 2.0 2 14 566 578 565 584 0.84 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF611-203 - 705 8.2e-12 45.1 91.9 13 15 0.0074 10 6.5 1.1 2 18 594 610 593 614 0.84 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF611-203 - 705 8.2e-12 45.1 91.9 14 15 0.00087 1.2 9.5 0.1 2 21 650 669 649 670 0.88 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF611-203 - 705 8.2e-12 45.1 91.9 15 15 0.088 1.2e+02 3.1 0.7 2 20 678 696 677 696 0.88 Zinc-finger double-stranded RNA-binding BolA PF01722.18 76 ZNF611-203 - 705 7.5e-09 35.7 34.6 1 11 5.4 7.5e+03 -2.7 0.0 54 72 100 118 89 121 0.71 BolA-like protein BolA PF01722.18 76 ZNF611-203 - 705 7.5e-09 35.7 34.6 2 11 1.1 1.6e+03 -0.5 0.1 23 50 223 250 213 254 0.79 BolA-like protein BolA PF01722.18 76 ZNF611-203 - 705 7.5e-09 35.7 34.6 3 11 1.6 2.2e+03 -1.0 0.1 18 49 248 277 228 283 0.69 BolA-like protein BolA PF01722.18 76 ZNF611-203 - 705 7.5e-09 35.7 34.6 4 11 1.5 2e+03 -0.9 0.0 26 53 282 309 266 315 0.79 BolA-like protein BolA PF01722.18 76 ZNF611-203 - 705 7.5e-09 35.7 34.6 5 11 0.17 2.4e+02 2.1 0.0 26 51 338 363 326 366 0.86 BolA-like protein BolA PF01722.18 76 ZNF611-203 - 705 7.5e-09 35.7 34.6 6 11 3.9e-05 0.054 13.8 1.8 19 55 388 422 353 426 0.87 BolA-like protein BolA PF01722.18 76 ZNF611-203 - 705 7.5e-09 35.7 34.6 7 11 0.0013 1.8 8.9 0.2 16 51 439 474 434 476 0.84 BolA-like protein BolA PF01722.18 76 ZNF611-203 - 705 7.5e-09 35.7 34.6 8 11 0.0043 6 7.2 0.1 22 53 528 560 499 562 0.85 BolA-like protein BolA PF01722.18 76 ZNF611-203 - 705 7.5e-09 35.7 34.6 9 11 0.018 24 5.3 1.8 15 52 578 615 572 618 0.86 BolA-like protein BolA PF01722.18 76 ZNF611-203 - 705 7.5e-09 35.7 34.6 10 11 0.0002 0.28 11.5 0.1 25 54 644 673 632 677 0.85 BolA-like protein BolA PF01722.18 76 ZNF611-203 - 705 7.5e-09 35.7 34.6 11 11 0.17 2.4e+02 2.1 0.3 27 53 674 700 669 701 0.83 BolA-like protein zf-met PF12874.7 25 ZNF611-203 - 705 3.7e-08 33.5 117.5 1 15 6.2e-05 0.085 13.3 1.3 1 19 259 277 259 279 0.95 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF611-203 - 705 3.7e-08 33.5 117.5 2 15 0.0037 5 7.6 1.5 1 19 287 305 287 307 0.93 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF611-203 - 705 3.7e-08 33.5 117.5 3 15 6.8 9.4e+03 -2.7 0.1 1 10 315 324 315 329 0.86 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF611-203 - 705 3.7e-08 33.5 117.5 4 15 0.021 29 5.2 1.5 1 17 343 359 343 361 0.90 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF611-203 - 705 3.7e-08 33.5 117.5 5 15 0.00017 0.23 11.9 0.5 1 21 370 390 370 393 0.91 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF611-203 - 705 3.7e-08 33.5 117.5 6 15 0.003 4.1 7.9 0.4 1 19 398 416 398 421 0.87 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF611-203 - 705 3.7e-08 33.5 117.5 7 15 0.026 35 5.0 3.7 1 19 426 444 426 444 0.94 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF611-203 - 705 3.7e-08 33.5 117.5 8 15 0.013 17 5.9 0.3 1 19 454 472 454 474 0.73 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF611-203 - 705 3.7e-08 33.5 117.5 9 15 0.13 1.8e+02 2.7 0.3 1 20 482 501 482 505 0.87 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF611-203 - 705 3.7e-08 33.5 117.5 10 15 0.00013 0.18 12.3 0.6 1 23 510 532 510 533 0.91 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF611-203 - 705 3.7e-08 33.5 117.5 11 15 0.00039 0.54 10.7 3.3 1 21 538 558 538 560 0.92 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF611-203 - 705 3.7e-08 33.5 117.5 12 15 0.13 1.8e+02 2.7 6.3 1 19 566 584 566 588 0.93 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF611-203 - 705 3.7e-08 33.5 117.5 13 15 0.0079 11 6.6 3.3 1 19 594 612 594 614 0.94 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF611-203 - 705 3.7e-08 33.5 117.5 14 15 0.0025 3.4 8.2 0.3 1 21 650 670 650 673 0.90 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF611-203 - 705 3.7e-08 33.5 117.5 15 15 0.039 53 4.4 1.3 1 19 678 696 678 699 0.96 Zinc-finger of C2H2 type Zn-ribbon_8 PF09723.10 40 ZNF611-203 - 705 1.8e-07 31.1 102.8 1 17 1.9 2.6e+03 -1.4 0.0 6 16 231 241 230 252 0.80 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF611-203 - 705 1.8e-07 31.1 102.8 2 17 0.051 71 3.6 3.0 5 20 258 273 258 285 0.77 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF611-203 - 705 1.8e-07 31.1 102.8 3 17 0.0011 1.6 8.9 0.8 6 18 287 299 286 309 0.83 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF611-203 - 705 1.8e-07 31.1 102.8 4 17 0.011 16 5.7 0.0 6 15 315 324 312 338 0.87 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF611-203 - 705 1.8e-07 31.1 102.8 5 17 0.005 6.9 6.9 6.8 6 34 343 377 342 382 0.83 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF611-203 - 705 1.8e-07 31.1 102.8 6 17 0.0021 2.9 8.1 4.6 6 34 370 405 369 408 0.79 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF611-203 - 705 1.8e-07 31.1 102.8 7 17 4.1e-05 0.056 13.6 2.0 6 35 398 434 396 438 0.89 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF611-203 - 705 1.8e-07 31.1 102.8 8 17 0.0012 1.7 8.8 0.6 6 17 426 437 424 444 0.85 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF611-203 - 705 1.8e-07 31.1 102.8 9 17 0.036 49 4.2 5.1 6 34 454 489 453 490 0.79 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF611-203 - 705 1.8e-07 31.1 102.8 10 17 0.001 1.4 9.1 5.8 6 34 482 517 481 523 0.83 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF611-203 - 705 1.8e-07 31.1 102.8 11 17 0.0057 7.8 6.7 4.8 6 34 510 545 509 548 0.88 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF611-203 - 705 1.8e-07 31.1 102.8 12 17 0.077 1.1e+02 3.1 5.7 6 34 538 573 537 576 0.82 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF611-203 - 705 1.8e-07 31.1 102.8 13 17 0.015 20 5.4 7.1 6 38 566 605 565 606 0.77 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF611-203 - 705 1.8e-07 31.1 102.8 14 17 0.0078 11 6.3 1.1 6 21 594 609 593 617 0.85 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF611-203 - 705 1.8e-07 31.1 102.8 15 17 0.026 36 4.6 5.6 6 34 622 657 621 661 0.64 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF611-203 - 705 1.8e-07 31.1 102.8 16 17 0.0014 1.9 8.7 3.0 6 35 650 686 648 690 0.81 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF611-203 - 705 1.8e-07 31.1 102.8 17 17 0.0021 3 8.1 0.5 6 18 678 690 677 699 0.81 Zinc ribbon domain # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF611-203.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF611-203.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF611-203.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF611-203.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF611-203.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:10:44 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZNF611-204 - 705 3.5e-94 305.4 169.0 1 19 0.26 3.7e+02 1.8 0.3 2 17 90 117 89 119 0.69 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF611-204 - 705 3.5e-94 305.4 169.0 2 19 0.045 61 4.3 0.5 8 25 224 241 221 242 0.88 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF611-204 - 705 3.5e-94 305.4 169.0 3 19 9.8e-07 0.0013 19.0 0.8 2 26 246 270 246 270 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF611-204 - 705 3.5e-94 305.4 169.0 4 19 6.1e-08 8.4e-05 22.8 5.9 5 25 277 297 274 298 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF611-204 - 705 3.5e-94 305.4 169.0 5 19 4.8e-07 0.00066 20.0 0.9 5 25 305 325 301 326 0.90 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF611-204 - 705 3.5e-94 305.4 169.0 6 19 2.1e-06 0.0029 18.0 0.7 10 25 338 353 338 354 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF611-204 - 705 3.5e-94 305.4 169.0 7 19 6.8e-10 9.4e-07 29.0 2.3 5 25 360 380 358 381 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF611-204 - 705 3.5e-94 305.4 169.0 8 19 7e-09 9.6e-06 25.8 1.8 4 25 387 408 386 408 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF611-204 - 705 3.5e-94 305.4 169.0 9 19 1.1e-08 1.5e-05 25.2 3.2 2 26 413 437 412 437 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF611-204 - 705 3.5e-94 305.4 169.0 10 19 8.2e-07 0.0011 19.3 2.7 5 25 444 464 440 464 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF611-204 - 705 3.5e-94 305.4 169.0 11 19 4.3e-07 0.00059 20.1 1.2 7 25 470 492 469 493 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF611-204 - 705 3.5e-94 305.4 169.0 12 19 1e-08 1.4e-05 25.3 0.2 5 25 500 520 496 521 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF611-204 - 705 3.5e-94 305.4 169.0 13 19 1.3e-10 1.8e-07 31.3 1.8 1 25 524 548 524 549 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF611-204 - 705 3.5e-94 305.4 169.0 14 19 3.4e-10 4.7e-07 29.9 3.6 2 26 553 577 552 577 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF611-204 - 705 3.5e-94 305.4 169.0 15 19 9.3e-08 0.00013 22.2 5.1 5 25 584 604 580 605 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF611-204 - 705 3.5e-94 305.4 169.0 16 19 4.3e-06 0.0059 17.0 6.9 5 26 612 633 610 633 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF611-204 - 705 3.5e-94 305.4 169.0 17 19 1.7e-10 2.3e-07 30.9 0.5 2 26 637 661 636 661 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF611-204 - 705 3.5e-94 305.4 169.0 18 19 2.8e-11 3.9e-08 33.4 0.7 2 25 665 688 665 689 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF611-204 - 705 3.5e-94 305.4 169.0 19 19 0.0016 2.3 8.8 3.3 1 14 692 705 692 705 0.96 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZNF611-204 - 705 2e-57 188.6 172.3 1 17 0.27 3.7e+02 1.9 0.5 7 20 237 250 231 253 0.79 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF611-204 - 705 2e-57 188.6 172.3 2 17 0.0095 13 6.5 1.6 1 16 259 274 259 277 0.86 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF611-204 - 705 2e-57 188.6 172.3 3 17 1.5e-06 0.0021 18.4 4.3 1 23 287 309 287 309 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF611-204 - 705 2e-57 188.6 172.3 4 17 0.00068 0.94 10.1 0.0 1 16 315 330 315 332 0.92 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF611-204 - 705 2e-57 188.6 172.3 5 17 2.8e-07 0.00038 20.7 1.8 1 20 343 362 343 364 0.95 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF611-204 - 705 2e-57 188.6 172.3 6 17 4.6e-08 6.3e-05 23.2 1.1 1 23 370 392 370 392 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF611-204 - 705 2e-57 188.6 172.3 7 17 5.6e-06 0.0078 16.6 1.9 1 23 398 420 398 420 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF611-204 - 705 2e-57 188.6 172.3 8 17 1.1e-05 0.015 15.7 8.1 1 23 426 448 426 448 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF611-204 - 705 2e-57 188.6 172.3 9 17 8.4e-06 0.012 16.1 0.1 1 21 454 474 454 475 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF611-204 - 705 2e-57 188.6 172.3 10 17 1.3e-07 0.00017 21.8 0.3 1 23 482 504 482 504 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF611-204 - 705 2e-57 188.6 172.3 11 17 5.6e-08 7.8e-05 22.9 0.6 1 23 510 532 510 532 0.95 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF611-204 - 705 2e-57 188.6 172.3 12 17 4.2e-05 0.058 13.9 4.4 1 23 538 560 538 560 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF611-204 - 705 2e-57 188.6 172.3 13 17 0.0002 0.28 11.7 9.3 1 23 566 588 566 588 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF611-204 - 705 2e-57 188.6 172.3 14 17 5.7e-05 0.078 13.5 8.5 1 23 594 616 594 616 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF611-204 - 705 2e-57 188.6 172.3 15 17 9.2e-06 0.013 15.9 6.1 1 23 622 644 622 644 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF611-204 - 705 2e-57 188.6 172.3 16 17 5.2e-09 7.2e-06 26.2 0.9 1 23 650 672 650 672 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF611-204 - 705 2e-57 188.6 172.3 17 17 4.3e-09 6e-06 26.4 4.4 1 23 678 700 678 700 0.99 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZNF611-204 - 705 1.7e-26 90.6 162.5 1 18 7.7 1.1e+04 -2.1 0.6 15 24 89 97 87 97 0.72 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF611-204 - 705 1.7e-26 90.6 162.5 2 18 0.11 1.5e+02 3.6 0.5 2 23 232 253 231 254 0.77 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF611-204 - 705 1.7e-26 90.6 162.5 3 18 0.16 2.2e+02 3.1 4.8 1 19 259 277 259 281 0.74 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF611-204 - 705 1.7e-26 90.6 162.5 4 18 5e-05 0.069 14.0 3.7 1 23 287 309 287 310 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF611-204 - 705 1.7e-26 90.6 162.5 5 18 0.047 65 4.8 0.0 1 16 315 330 315 332 0.84 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF611-204 - 705 1.7e-26 90.6 162.5 6 18 0.00015 0.21 12.5 1.5 1 20 343 362 343 364 0.91 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF611-204 - 705 1.7e-26 90.6 162.5 7 18 1.6e-05 0.022 15.6 0.8 1 23 370 392 370 393 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF611-204 - 705 1.7e-26 90.6 162.5 8 18 0.00098 1.3 10.0 1.5 1 23 398 420 398 421 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF611-204 - 705 1.7e-26 90.6 162.5 9 18 0.00091 1.2 10.1 5.9 1 23 426 448 426 449 0.88 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF611-204 - 705 1.7e-26 90.6 162.5 10 18 0.0083 11 7.1 0.2 1 19 454 472 454 475 0.78 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF611-204 - 705 1.7e-26 90.6 162.5 11 18 6.4e-05 0.088 13.7 0.2 1 23 482 504 482 505 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF611-204 - 705 1.7e-26 90.6 162.5 12 18 8.1e-06 0.011 16.5 0.6 1 23 510 532 510 533 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF611-204 - 705 1.7e-26 90.6 162.5 13 18 0.00031 0.43 11.6 4.0 1 23 538 560 538 561 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF611-204 - 705 1.7e-26 90.6 162.5 14 18 0.02 28 5.9 7.9 1 23 566 588 566 589 0.80 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF611-204 - 705 1.7e-26 90.6 162.5 15 18 0.00049 0.67 11.0 7.1 1 23 594 616 594 617 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF611-204 - 705 1.7e-26 90.6 162.5 16 18 0.001 1.4 10.0 4.4 1 23 622 644 622 645 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF611-204 - 705 1.7e-26 90.6 162.5 17 18 1.2e-05 0.017 16.0 0.5 1 23 650 672 650 673 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF611-204 - 705 1.7e-26 90.6 162.5 18 18 2.4e-05 0.033 15.0 3.1 1 23 678 700 678 701 0.94 C2H2-type zinc finger KRAB PF01352.27 42 ZNF611-204 - 705 4.8e-21 74.1 0.1 1 1 6.2e-24 8.5e-21 73.3 0.1 2 41 24 63 23 64 0.95 KRAB box zf-C2H2_6 PF13912.6 27 ZNF611-204 - 705 7.5e-21 73.7 137.3 1 16 0.00095 1.3 9.1 6.3 2 24 259 281 258 282 0.95 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF611-204 - 705 7.5e-21 73.7 137.3 2 16 5.3e-05 0.073 13.1 4.8 2 24 287 309 287 311 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF611-204 - 705 7.5e-21 73.7 137.3 3 16 0.0046 6.4 6.9 0.2 1 11 314 324 314 326 0.88 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF611-204 - 705 7.5e-21 73.7 137.3 4 16 0.00087 1.2 9.2 1.7 2 22 343 363 343 364 0.85 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF611-204 - 705 7.5e-21 73.7 137.3 5 16 0.00083 1.1 9.3 0.6 2 21 370 389 370 394 0.77 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF611-204 - 705 7.5e-21 73.7 137.3 6 16 0.041 56 3.9 0.1 2 11 398 407 398 419 0.91 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF611-204 - 705 7.5e-21 73.7 137.3 7 16 0.00024 0.33 11.0 0.9 2 12 426 436 425 441 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF611-204 - 705 7.5e-21 73.7 137.3 8 16 0.0012 1.7 8.8 0.4 2 11 454 463 453 465 0.92 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF611-204 - 705 7.5e-21 73.7 137.3 9 16 0.00028 0.39 10.8 0.3 2 12 482 492 482 504 0.86 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF611-204 - 705 7.5e-21 73.7 137.3 10 16 5.7e-07 0.00078 19.4 0.9 2 24 510 532 510 535 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF611-204 - 705 7.5e-21 73.7 137.3 11 16 0.005 6.9 6.8 1.9 2 11 538 547 538 560 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF611-204 - 705 7.5e-21 73.7 137.3 12 16 0.0017 2.4 8.3 2.8 2 12 566 576 566 577 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF611-204 - 705 7.5e-21 73.7 137.3 13 16 0.0012 1.7 8.7 6.0 2 24 594 616 594 619 0.88 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF611-204 - 705 7.5e-21 73.7 137.3 14 16 0.00077 1.1 9.4 3.8 2 24 622 644 622 647 0.92 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF611-204 - 705 7.5e-21 73.7 137.3 15 16 0.0016 2.2 8.4 0.4 2 12 650 660 649 662 0.90 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF611-204 - 705 7.5e-21 73.7 137.3 16 16 0.022 30 4.7 5.8 2 14 678 690 678 700 0.78 C2H2-type zinc finger zf-C2H2_jaz PF12171.8 27 ZNF611-204 - 705 8.2e-12 45.1 91.9 1 15 0.0068 9.4 6.7 0.6 1 15 258 272 258 275 0.91 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF611-204 - 705 8.2e-12 45.1 91.9 2 15 0.0016 2.3 8.6 0.6 2 18 287 303 286 307 0.85 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF611-204 - 705 8.2e-12 45.1 91.9 3 15 0.27 3.7e+02 1.6 0.1 2 12 315 325 314 331 0.83 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF611-204 - 705 8.2e-12 45.1 91.9 4 15 0.0053 7.3 7.0 1.3 2 18 343 359 342 362 0.86 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF611-204 - 705 8.2e-12 45.1 91.9 5 15 1.5e-05 0.02 15.1 0.2 2 22 370 390 369 390 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF611-204 - 705 8.2e-12 45.1 91.9 6 15 0.05 69 3.9 0.1 2 21 398 417 397 418 0.84 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF611-204 - 705 8.2e-12 45.1 91.9 7 15 0.061 84 3.6 1.8 2 17 426 441 425 444 0.86 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF611-204 - 705 8.2e-12 45.1 91.9 8 15 0.0013 1.8 8.9 0.4 2 21 454 473 453 474 0.87 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF611-204 - 705 8.2e-12 45.1 91.9 9 15 0.044 61 4.1 0.1 2 21 482 501 481 502 0.82 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF611-204 - 705 8.2e-12 45.1 91.9 10 15 2.4e-05 0.034 14.4 0.4 2 23 510 531 509 532 0.91 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF611-204 - 705 8.2e-12 45.1 91.9 11 15 0.012 16 5.9 2.3 2 20 538 556 537 558 0.78 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF611-204 - 705 8.2e-12 45.1 91.9 12 15 0.054 75 3.8 2.0 2 14 566 578 565 584 0.84 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF611-204 - 705 8.2e-12 45.1 91.9 13 15 0.0074 10 6.5 1.1 2 18 594 610 593 614 0.84 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF611-204 - 705 8.2e-12 45.1 91.9 14 15 0.00087 1.2 9.5 0.1 2 21 650 669 649 670 0.88 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF611-204 - 705 8.2e-12 45.1 91.9 15 15 0.088 1.2e+02 3.1 0.7 2 20 678 696 677 696 0.88 Zinc-finger double-stranded RNA-binding BolA PF01722.18 76 ZNF611-204 - 705 7.5e-09 35.7 34.6 1 11 5.4 7.5e+03 -2.7 0.0 54 72 100 118 89 121 0.71 BolA-like protein BolA PF01722.18 76 ZNF611-204 - 705 7.5e-09 35.7 34.6 2 11 1.1 1.6e+03 -0.5 0.1 23 50 223 250 213 254 0.79 BolA-like protein BolA PF01722.18 76 ZNF611-204 - 705 7.5e-09 35.7 34.6 3 11 1.6 2.2e+03 -1.0 0.1 18 49 248 277 228 283 0.69 BolA-like protein BolA PF01722.18 76 ZNF611-204 - 705 7.5e-09 35.7 34.6 4 11 1.5 2e+03 -0.9 0.0 26 53 282 309 266 315 0.79 BolA-like protein BolA PF01722.18 76 ZNF611-204 - 705 7.5e-09 35.7 34.6 5 11 0.17 2.4e+02 2.1 0.0 26 51 338 363 326 366 0.86 BolA-like protein BolA PF01722.18 76 ZNF611-204 - 705 7.5e-09 35.7 34.6 6 11 3.9e-05 0.054 13.8 1.8 19 55 388 422 353 426 0.87 BolA-like protein BolA PF01722.18 76 ZNF611-204 - 705 7.5e-09 35.7 34.6 7 11 0.0013 1.8 8.9 0.2 16 51 439 474 434 476 0.84 BolA-like protein BolA PF01722.18 76 ZNF611-204 - 705 7.5e-09 35.7 34.6 8 11 0.0043 6 7.2 0.1 22 53 528 560 499 562 0.85 BolA-like protein BolA PF01722.18 76 ZNF611-204 - 705 7.5e-09 35.7 34.6 9 11 0.018 24 5.3 1.8 15 52 578 615 572 618 0.86 BolA-like protein BolA PF01722.18 76 ZNF611-204 - 705 7.5e-09 35.7 34.6 10 11 0.0002 0.28 11.5 0.1 25 54 644 673 632 677 0.85 BolA-like protein BolA PF01722.18 76 ZNF611-204 - 705 7.5e-09 35.7 34.6 11 11 0.17 2.4e+02 2.1 0.3 27 53 674 700 669 701 0.83 BolA-like protein zf-met PF12874.7 25 ZNF611-204 - 705 3.7e-08 33.5 117.5 1 15 6.2e-05 0.085 13.3 1.3 1 19 259 277 259 279 0.95 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF611-204 - 705 3.7e-08 33.5 117.5 2 15 0.0037 5 7.6 1.5 1 19 287 305 287 307 0.93 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF611-204 - 705 3.7e-08 33.5 117.5 3 15 6.8 9.4e+03 -2.7 0.1 1 10 315 324 315 329 0.86 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF611-204 - 705 3.7e-08 33.5 117.5 4 15 0.021 29 5.2 1.5 1 17 343 359 343 361 0.90 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF611-204 - 705 3.7e-08 33.5 117.5 5 15 0.00017 0.23 11.9 0.5 1 21 370 390 370 393 0.91 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF611-204 - 705 3.7e-08 33.5 117.5 6 15 0.003 4.1 7.9 0.4 1 19 398 416 398 421 0.87 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF611-204 - 705 3.7e-08 33.5 117.5 7 15 0.026 35 5.0 3.7 1 19 426 444 426 444 0.94 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF611-204 - 705 3.7e-08 33.5 117.5 8 15 0.013 17 5.9 0.3 1 19 454 472 454 474 0.73 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF611-204 - 705 3.7e-08 33.5 117.5 9 15 0.13 1.8e+02 2.7 0.3 1 20 482 501 482 505 0.87 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF611-204 - 705 3.7e-08 33.5 117.5 10 15 0.00013 0.18 12.3 0.6 1 23 510 532 510 533 0.91 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF611-204 - 705 3.7e-08 33.5 117.5 11 15 0.00039 0.54 10.7 3.3 1 21 538 558 538 560 0.92 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF611-204 - 705 3.7e-08 33.5 117.5 12 15 0.13 1.8e+02 2.7 6.3 1 19 566 584 566 588 0.93 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF611-204 - 705 3.7e-08 33.5 117.5 13 15 0.0079 11 6.6 3.3 1 19 594 612 594 614 0.94 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF611-204 - 705 3.7e-08 33.5 117.5 14 15 0.0025 3.4 8.2 0.3 1 21 650 670 650 673 0.90 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF611-204 - 705 3.7e-08 33.5 117.5 15 15 0.039 53 4.4 1.3 1 19 678 696 678 699 0.96 Zinc-finger of C2H2 type Zn-ribbon_8 PF09723.10 40 ZNF611-204 - 705 1.8e-07 31.1 102.8 1 17 1.9 2.6e+03 -1.4 0.0 6 16 231 241 230 252 0.80 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF611-204 - 705 1.8e-07 31.1 102.8 2 17 0.051 71 3.6 3.0 5 20 258 273 258 285 0.77 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF611-204 - 705 1.8e-07 31.1 102.8 3 17 0.0011 1.6 8.9 0.8 6 18 287 299 286 309 0.83 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF611-204 - 705 1.8e-07 31.1 102.8 4 17 0.011 16 5.7 0.0 6 15 315 324 312 338 0.87 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF611-204 - 705 1.8e-07 31.1 102.8 5 17 0.005 6.9 6.9 6.8 6 34 343 377 342 382 0.83 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF611-204 - 705 1.8e-07 31.1 102.8 6 17 0.0021 2.9 8.1 4.6 6 34 370 405 369 408 0.79 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF611-204 - 705 1.8e-07 31.1 102.8 7 17 4.1e-05 0.056 13.6 2.0 6 35 398 434 396 438 0.89 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF611-204 - 705 1.8e-07 31.1 102.8 8 17 0.0012 1.7 8.8 0.6 6 17 426 437 424 444 0.85 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF611-204 - 705 1.8e-07 31.1 102.8 9 17 0.036 49 4.2 5.1 6 34 454 489 453 490 0.79 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF611-204 - 705 1.8e-07 31.1 102.8 10 17 0.001 1.4 9.1 5.8 6 34 482 517 481 523 0.83 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF611-204 - 705 1.8e-07 31.1 102.8 11 17 0.0057 7.8 6.7 4.8 6 34 510 545 509 548 0.88 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF611-204 - 705 1.8e-07 31.1 102.8 12 17 0.077 1.1e+02 3.1 5.7 6 34 538 573 537 576 0.82 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF611-204 - 705 1.8e-07 31.1 102.8 13 17 0.015 20 5.4 7.1 6 38 566 605 565 606 0.77 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF611-204 - 705 1.8e-07 31.1 102.8 14 17 0.0078 11 6.3 1.1 6 21 594 609 593 617 0.85 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF611-204 - 705 1.8e-07 31.1 102.8 15 17 0.026 36 4.6 5.6 6 34 622 657 621 661 0.64 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF611-204 - 705 1.8e-07 31.1 102.8 16 17 0.0014 1.9 8.7 3.0 6 35 650 686 648 690 0.81 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF611-204 - 705 1.8e-07 31.1 102.8 17 17 0.0021 3 8.1 0.5 6 18 678 690 677 699 0.81 Zinc ribbon domain # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF611-204.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF611-204.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF611-204.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF611-204.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF611-204.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:10:45 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZNF611-205 - 636 3.8e-95 308.4 169.0 1 19 0.25 3.2e+02 2.0 0.3 2 17 21 48 20 50 0.69 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF611-205 - 636 3.8e-95 308.4 169.0 2 19 0.043 55 4.4 0.5 8 25 155 172 152 173 0.88 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF611-205 - 636 3.8e-95 308.4 169.0 3 19 9.3e-07 0.0012 19.2 0.8 2 26 177 201 177 201 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF611-205 - 636 3.8e-95 308.4 169.0 4 19 5.9e-08 7.5e-05 23.0 5.9 5 25 208 228 205 229 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF611-205 - 636 3.8e-95 308.4 169.0 5 19 4.6e-07 0.00059 20.2 0.9 5 25 236 256 232 257 0.90 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF611-205 - 636 3.8e-95 308.4 169.0 6 19 2e-06 0.0026 18.1 0.7 10 25 269 284 269 285 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF611-205 - 636 3.8e-95 308.4 169.0 7 19 6.5e-10 8.3e-07 29.2 2.3 5 25 291 311 289 312 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF611-205 - 636 3.8e-95 308.4 169.0 8 19 6.7e-09 8.5e-06 26.0 1.8 4 25 318 339 317 339 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF611-205 - 636 3.8e-95 308.4 169.0 9 19 1.1e-08 1.3e-05 25.3 3.2 2 26 344 368 343 368 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF611-205 - 636 3.8e-95 308.4 169.0 10 19 7.8e-07 0.001 19.4 2.7 5 25 375 395 371 395 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF611-205 - 636 3.8e-95 308.4 169.0 11 19 4.1e-07 0.00053 20.3 1.2 7 25 401 423 400 424 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF611-205 - 636 3.8e-95 308.4 169.0 12 19 9.6e-09 1.2e-05 25.5 0.2 5 25 431 451 427 452 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF611-205 - 636 3.8e-95 308.4 169.0 13 19 1.2e-10 1.6e-07 31.4 1.8 1 25 455 479 455 480 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF611-205 - 636 3.8e-95 308.4 169.0 14 19 3.3e-10 4.2e-07 30.1 3.6 2 26 484 508 483 508 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF611-205 - 636 3.8e-95 308.4 169.0 15 19 8.9e-08 0.00011 22.4 5.1 5 25 515 535 511 536 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF611-205 - 636 3.8e-95 308.4 169.0 16 19 4.1e-06 0.0052 17.2 6.9 5 26 543 564 541 564 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF611-205 - 636 3.8e-95 308.4 169.0 17 19 1.6e-10 2.1e-07 31.1 0.5 2 26 568 592 567 592 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF611-205 - 636 3.8e-95 308.4 169.0 18 19 2.7e-11 3.5e-08 33.5 0.7 2 25 596 619 596 620 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF611-205 - 636 3.8e-95 308.4 169.0 19 19 0.0016 2 9.0 3.3 1 14 623 636 623 636 0.96 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZNF611-205 - 636 1.9e-57 188.6 175.1 1 17 0.26 3.3e+02 2.0 0.5 7 20 168 181 162 184 0.79 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF611-205 - 636 1.9e-57 188.6 175.1 2 17 0.048 61 4.3 3.9 1 16 190 205 190 212 0.88 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF611-205 - 636 1.9e-57 188.6 175.1 3 17 1.5e-06 0.0019 18.6 4.3 1 23 218 240 218 240 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF611-205 - 636 1.9e-57 188.6 175.1 4 17 0.00065 0.83 10.2 0.0 1 16 246 261 246 263 0.92 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF611-205 - 636 1.9e-57 188.6 175.1 5 17 2.6e-07 0.00034 20.9 1.8 1 20 274 293 274 295 0.95 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF611-205 - 636 1.9e-57 188.6 175.1 6 17 4.4e-08 5.6e-05 23.4 1.1 1 23 301 323 301 323 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF611-205 - 636 1.9e-57 188.6 175.1 7 17 5.4e-06 0.0069 16.8 1.9 1 23 329 351 329 351 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF611-205 - 636 1.9e-57 188.6 175.1 8 17 1.1e-05 0.014 15.9 8.1 1 23 357 379 357 379 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF611-205 - 636 1.9e-57 188.6 175.1 9 17 8e-06 0.01 16.2 0.1 1 21 385 405 385 406 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF611-205 - 636 1.9e-57 188.6 175.1 10 17 1.2e-07 0.00016 22.0 0.3 1 23 413 435 413 435 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF611-205 - 636 1.9e-57 188.6 175.1 11 17 5.4e-08 6.9e-05 23.1 0.6 1 23 441 463 441 463 0.95 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF611-205 - 636 1.9e-57 188.6 175.1 12 17 4e-05 0.052 14.0 4.4 1 23 469 491 469 491 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF611-205 - 636 1.9e-57 188.6 175.1 13 17 0.00019 0.25 11.9 9.3 1 23 497 519 497 519 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF611-205 - 636 1.9e-57 188.6 175.1 14 17 5.4e-05 0.069 13.6 8.5 1 23 525 547 525 547 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF611-205 - 636 1.9e-57 188.6 175.1 15 17 8.8e-06 0.011 16.1 6.1 1 23 553 575 553 575 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF611-205 - 636 1.9e-57 188.6 175.1 16 17 5e-09 6.4e-06 26.3 0.9 1 23 581 603 581 603 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF611-205 - 636 1.9e-57 188.6 175.1 17 17 4.1e-09 5.3e-06 26.6 4.4 1 23 609 631 609 631 0.99 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZNF611-205 - 636 1.6e-26 90.7 165.2 1 17 0.1 1.3e+02 3.8 0.5 2 23 163 184 162 185 0.77 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF611-205 - 636 1.6e-26 90.7 165.2 2 17 0.15 2e+02 3.3 4.8 1 19 190 208 190 212 0.74 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF611-205 - 636 1.6e-26 90.7 165.2 3 17 4.8e-05 0.061 14.2 3.7 1 23 218 240 218 241 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF611-205 - 636 1.6e-26 90.7 165.2 4 17 0.045 58 4.9 0.0 1 16 246 261 246 263 0.84 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF611-205 - 636 1.6e-26 90.7 165.2 5 17 0.00014 0.18 12.7 1.5 1 20 274 293 274 295 0.91 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF611-205 - 636 1.6e-26 90.7 165.2 6 17 1.5e-05 0.019 15.8 0.8 1 23 301 323 301 324 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF611-205 - 636 1.6e-26 90.7 165.2 7 17 0.00093 1.2 10.2 1.5 1 23 329 351 329 352 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF611-205 - 636 1.6e-26 90.7 165.2 8 17 0.00086 1.1 10.3 5.9 1 23 357 379 357 380 0.88 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF611-205 - 636 1.6e-26 90.7 165.2 9 17 0.0079 10 7.3 0.2 1 19 385 403 385 406 0.78 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF611-205 - 636 1.6e-26 90.7 165.2 10 17 6.1e-05 0.078 13.9 0.2 1 23 413 435 413 436 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF611-205 - 636 1.6e-26 90.7 165.2 11 17 7.7e-06 0.0099 16.7 0.6 1 23 441 463 441 464 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF611-205 - 636 1.6e-26 90.7 165.2 12 17 0.0003 0.38 11.7 4.0 1 23 469 491 469 492 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF611-205 - 636 1.6e-26 90.7 165.2 13 17 0.019 25 6.1 7.9 1 23 497 519 497 520 0.80 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF611-205 - 636 1.6e-26 90.7 165.2 14 17 0.00046 0.59 11.1 7.1 1 23 525 547 525 548 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF611-205 - 636 1.6e-26 90.7 165.2 15 17 0.00096 1.2 10.1 4.4 1 23 553 575 553 576 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF611-205 - 636 1.6e-26 90.7 165.2 16 17 1.1e-05 0.015 16.1 0.5 1 23 581 603 581 604 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF611-205 - 636 1.6e-26 90.7 165.2 17 17 2.3e-05 0.029 15.2 3.1 1 23 609 631 609 632 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF611-205 - 636 1.6e-21 75.8 137.8 1 16 0.00091 1.2 9.3 6.3 2 24 190 212 189 213 0.95 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF611-205 - 636 1.6e-21 75.8 137.8 2 16 5.1e-05 0.065 13.3 4.8 2 24 218 240 218 242 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF611-205 - 636 1.6e-21 75.8 137.8 3 16 0.0044 5.7 7.1 0.2 1 11 245 255 245 257 0.88 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF611-205 - 636 1.6e-21 75.8 137.8 4 16 0.00083 1.1 9.4 1.7 2 22 274 294 274 295 0.85 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF611-205 - 636 1.6e-21 75.8 137.8 5 16 0.00079 1 9.4 0.6 2 21 301 320 301 325 0.77 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF611-205 - 636 1.6e-21 75.8 137.8 6 16 0.039 50 4.1 0.1 2 11 329 338 329 350 0.91 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF611-205 - 636 1.6e-21 75.8 137.8 7 16 0.00023 0.29 11.2 0.9 2 12 357 367 356 372 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF611-205 - 636 1.6e-21 75.8 137.8 8 16 0.0012 1.5 8.9 0.4 2 11 385 394 384 396 0.92 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF611-205 - 636 1.6e-21 75.8 137.8 9 16 0.00027 0.35 10.9 0.3 2 12 413 423 413 435 0.86 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF611-205 - 636 1.6e-21 75.8 137.8 10 16 5.4e-07 0.00069 19.5 0.9 2 24 441 463 441 466 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF611-205 - 636 1.6e-21 75.8 137.8 11 16 0.0048 6.2 6.9 1.9 2 11 469 478 469 491 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF611-205 - 636 1.6e-21 75.8 137.8 12 16 0.0017 2.1 8.4 2.8 2 12 497 507 497 508 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF611-205 - 636 1.6e-21 75.8 137.8 13 16 0.0012 1.5 8.9 6.0 2 24 525 547 525 550 0.88 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF611-205 - 636 1.6e-21 75.8 137.8 14 16 0.00073 0.94 9.6 3.8 2 24 553 575 553 578 0.92 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF611-205 - 636 1.6e-21 75.8 137.8 15 16 0.0016 2 8.5 0.4 2 12 581 591 580 593 0.90 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF611-205 - 636 1.6e-21 75.8 137.8 16 16 0.03 39 4.4 6.3 2 14 609 621 609 631 0.78 C2H2-type zinc finger zf-C2H2_jaz PF12171.8 27 ZNF611-205 - 636 1.1e-11 44.7 94.7 1 15 0.021 27 5.2 2.2 1 15 189 203 189 207 0.91 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF611-205 - 636 1.1e-11 44.7 94.7 2 15 0.0016 2 8.8 0.6 2 18 218 234 217 238 0.85 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF611-205 - 636 1.1e-11 44.7 94.7 3 15 0.26 3.3e+02 1.7 0.1 2 12 246 256 245 262 0.83 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF611-205 - 636 1.1e-11 44.7 94.7 4 15 0.0051 6.5 7.2 1.3 2 18 274 290 273 293 0.86 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF611-205 - 636 1.1e-11 44.7 94.7 5 15 1.4e-05 0.018 15.3 0.2 2 22 301 321 300 321 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF611-205 - 636 1.1e-11 44.7 94.7 6 15 0.048 61 4.1 0.1 2 21 329 348 328 349 0.84 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF611-205 - 636 1.1e-11 44.7 94.7 7 15 0.058 74 3.8 1.8 2 17 357 372 356 375 0.86 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF611-205 - 636 1.1e-11 44.7 94.7 8 15 0.0013 1.6 9.1 0.4 2 21 385 404 384 405 0.87 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF611-205 - 636 1.1e-11 44.7 94.7 9 15 0.043 54 4.2 0.1 2 21 413 432 412 433 0.82 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF611-205 - 636 1.1e-11 44.7 94.7 10 15 2.3e-05 0.03 14.6 0.4 2 23 441 462 440 463 0.91 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF611-205 - 636 1.1e-11 44.7 94.7 11 15 0.011 14 6.1 2.3 2 20 469 487 468 489 0.78 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF611-205 - 636 1.1e-11 44.7 94.7 12 15 0.052 66 4.0 2.0 2 14 497 509 496 515 0.84 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF611-205 - 636 1.1e-11 44.7 94.7 13 15 0.0071 9.1 6.7 1.1 2 18 525 541 524 545 0.84 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF611-205 - 636 1.1e-11 44.7 94.7 14 15 0.00083 1.1 9.7 0.1 2 21 581 600 580 601 0.88 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF611-205 - 636 1.1e-11 44.7 94.7 15 15 0.085 1.1e+02 3.3 0.7 2 20 609 627 608 627 0.88 Zinc-finger double-stranded RNA-binding BolA PF01722.18 76 ZNF611-205 - 636 2.7e-09 37.2 34.7 1 11 5.2 6.6e+03 -2.5 0.0 54 72 31 49 20 52 0.71 BolA-like protein BolA PF01722.18 76 ZNF611-205 - 636 2.7e-09 37.2 34.7 2 11 1.1 1.4e+03 -0.3 0.1 23 50 154 181 144 185 0.79 BolA-like protein BolA PF01722.18 76 ZNF611-205 - 636 2.7e-09 37.2 34.7 3 11 1.5 1.9e+03 -0.8 0.1 18 49 179 208 159 216 0.70 BolA-like protein BolA PF01722.18 76 ZNF611-205 - 636 2.7e-09 37.2 34.7 4 11 1.4 1.8e+03 -0.7 0.0 26 53 213 240 197 246 0.79 BolA-like protein BolA PF01722.18 76 ZNF611-205 - 636 2.7e-09 37.2 34.7 5 11 0.17 2.1e+02 2.3 0.0 26 51 269 294 257 297 0.86 BolA-like protein BolA PF01722.18 76 ZNF611-205 - 636 2.7e-09 37.2 34.7 6 11 3.6e-05 0.046 14.0 1.8 19 55 319 353 284 357 0.87 BolA-like protein BolA PF01722.18 76 ZNF611-205 - 636 2.7e-09 37.2 34.7 7 11 0.0013 1.6 9.0 0.2 16 51 370 405 365 407 0.84 BolA-like protein BolA PF01722.18 76 ZNF611-205 - 636 2.7e-09 37.2 34.7 8 11 0.0041 5.3 7.4 0.1 22 53 459 491 430 493 0.85 BolA-like protein BolA PF01722.18 76 ZNF611-205 - 636 2.7e-09 37.2 34.7 9 11 0.017 21 5.5 1.8 15 52 509 546 503 549 0.86 BolA-like protein BolA PF01722.18 76 ZNF611-205 - 636 2.7e-09 37.2 34.7 10 11 0.00019 0.25 11.6 0.1 25 54 575 604 563 608 0.85 BolA-like protein BolA PF01722.18 76 ZNF611-205 - 636 2.7e-09 37.2 34.7 11 11 0.17 2.1e+02 2.3 0.3 27 53 605 631 600 632 0.83 BolA-like protein zf-met PF12874.7 25 ZNF611-205 - 636 6.8e-09 35.8 117.5 1 15 5.9e-05 0.076 13.4 1.3 1 19 190 208 190 210 0.95 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF611-205 - 636 6.8e-09 35.8 117.5 2 15 0.0035 4.5 7.8 1.5 1 19 218 236 218 238 0.93 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF611-205 - 636 6.8e-09 35.8 117.5 3 15 6.6 8.4e+03 -2.6 0.1 1 10 246 255 246 260 0.86 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF611-205 - 636 6.8e-09 35.8 117.5 4 15 0.02 26 5.4 1.5 1 17 274 290 274 292 0.90 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF611-205 - 636 6.8e-09 35.8 117.5 5 15 0.00016 0.2 12.1 0.5 1 21 301 321 301 324 0.91 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF611-205 - 636 6.8e-09 35.8 117.5 6 15 0.0029 3.7 8.1 0.4 1 19 329 347 329 352 0.87 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF611-205 - 636 6.8e-09 35.8 117.5 7 15 0.024 31 5.1 3.7 1 19 357 375 357 375 0.94 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF611-205 - 636 6.8e-09 35.8 117.5 8 15 0.012 15 6.1 0.3 1 19 385 403 385 405 0.73 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF611-205 - 636 6.8e-09 35.8 117.5 9 15 0.12 1.6e+02 2.9 0.3 1 20 413 432 413 436 0.87 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF611-205 - 636 6.8e-09 35.8 117.5 10 15 0.00012 0.16 12.4 0.6 1 23 441 463 441 464 0.91 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF611-205 - 636 6.8e-09 35.8 117.5 11 15 0.00038 0.48 10.9 3.3 1 21 469 489 469 491 0.92 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF611-205 - 636 6.8e-09 35.8 117.5 12 15 0.13 1.6e+02 2.8 6.3 1 19 497 515 497 519 0.93 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF611-205 - 636 6.8e-09 35.8 117.5 13 15 0.0076 9.7 6.7 3.3 1 19 525 543 525 545 0.94 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF611-205 - 636 6.8e-09 35.8 117.5 14 15 0.0024 3 8.4 0.3 1 21 581 601 581 604 0.90 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF611-205 - 636 6.8e-09 35.8 117.5 15 15 0.037 47 4.6 1.3 1 19 609 627 609 630 0.96 Zinc-finger of C2H2 type Zn-ribbon_8 PF09723.10 40 ZNF611-205 - 636 3.2e-08 33.5 102.7 1 17 1.8 2.3e+03 -1.2 0.0 6 16 162 172 161 183 0.80 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF611-205 - 636 3.2e-08 33.5 102.7 2 17 0.049 63 3.8 3.0 5 20 189 204 189 216 0.77 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF611-205 - 636 3.2e-08 33.5 102.7 3 17 0.0011 1.4 9.1 0.8 6 18 218 230 217 240 0.83 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF611-205 - 636 3.2e-08 33.5 102.7 4 17 0.011 14 5.9 0.0 6 15 246 255 243 269 0.87 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF611-205 - 636 3.2e-08 33.5 102.7 5 17 0.012 15 5.8 7.0 6 33 274 307 273 308 0.87 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF611-205 - 636 3.2e-08 33.5 102.7 6 17 0.0058 7.4 6.8 5.0 6 32 301 334 299 335 0.79 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF611-205 - 636 3.2e-08 33.5 102.7 7 17 3.7e-05 0.047 13.8 1.9 6 35 329 365 328 370 0.88 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF611-205 - 636 3.2e-08 33.5 102.7 8 17 0.0011 1.4 9.1 0.6 6 17 357 368 355 376 0.84 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF611-205 - 636 3.2e-08 33.5 102.7 9 17 0.033 42 4.4 5.1 6 34 385 420 384 421 0.79 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF611-205 - 636 3.2e-08 33.5 102.7 10 17 0.00098 1.3 9.2 5.7 6 34 413 448 412 453 0.83 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF611-205 - 636 3.2e-08 33.5 102.7 11 17 0.0051 6.5 7.0 4.8 6 34 441 476 440 479 0.88 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF611-205 - 636 3.2e-08 33.5 102.7 12 17 0.055 70 3.7 5.7 6 34 469 504 468 510 0.79 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF611-205 - 636 3.2e-08 33.5 102.7 13 17 0.013 17 5.6 7.0 6 38 497 536 496 537 0.77 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF611-205 - 636 3.2e-08 33.5 102.7 14 17 0.0073 9.3 6.5 1.0 6 21 525 540 524 548 0.85 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF611-205 - 636 3.2e-08 33.5 102.7 15 17 0.086 1.1e+02 3.0 5.9 6 18 553 565 552 586 0.73 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF611-205 - 636 3.2e-08 33.5 102.7 16 17 0.0014 1.8 8.8 3.1 6 35 581 617 579 621 0.81 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF611-205 - 636 3.2e-08 33.5 102.7 17 17 0.0021 2.6 8.2 0.5 6 18 609 621 608 630 0.81 Zinc ribbon domain # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF611-205.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF611-205.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF611-205.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF611-205.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF611-205.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:10:46 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZNF611-206 - 636 3.8e-95 308.4 169.0 1 19 0.25 3.2e+02 2.0 0.3 2 17 21 48 20 50 0.69 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF611-206 - 636 3.8e-95 308.4 169.0 2 19 0.043 55 4.4 0.5 8 25 155 172 152 173 0.88 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF611-206 - 636 3.8e-95 308.4 169.0 3 19 9.3e-07 0.0012 19.2 0.8 2 26 177 201 177 201 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF611-206 - 636 3.8e-95 308.4 169.0 4 19 5.9e-08 7.5e-05 23.0 5.9 5 25 208 228 205 229 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF611-206 - 636 3.8e-95 308.4 169.0 5 19 4.6e-07 0.00059 20.2 0.9 5 25 236 256 232 257 0.90 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF611-206 - 636 3.8e-95 308.4 169.0 6 19 2e-06 0.0026 18.1 0.7 10 25 269 284 269 285 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF611-206 - 636 3.8e-95 308.4 169.0 7 19 6.5e-10 8.3e-07 29.2 2.3 5 25 291 311 289 312 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF611-206 - 636 3.8e-95 308.4 169.0 8 19 6.7e-09 8.5e-06 26.0 1.8 4 25 318 339 317 339 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF611-206 - 636 3.8e-95 308.4 169.0 9 19 1.1e-08 1.3e-05 25.3 3.2 2 26 344 368 343 368 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF611-206 - 636 3.8e-95 308.4 169.0 10 19 7.8e-07 0.001 19.4 2.7 5 25 375 395 371 395 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF611-206 - 636 3.8e-95 308.4 169.0 11 19 4.1e-07 0.00053 20.3 1.2 7 25 401 423 400 424 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF611-206 - 636 3.8e-95 308.4 169.0 12 19 9.6e-09 1.2e-05 25.5 0.2 5 25 431 451 427 452 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF611-206 - 636 3.8e-95 308.4 169.0 13 19 1.2e-10 1.6e-07 31.4 1.8 1 25 455 479 455 480 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF611-206 - 636 3.8e-95 308.4 169.0 14 19 3.3e-10 4.2e-07 30.1 3.6 2 26 484 508 483 508 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF611-206 - 636 3.8e-95 308.4 169.0 15 19 8.9e-08 0.00011 22.4 5.1 5 25 515 535 511 536 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF611-206 - 636 3.8e-95 308.4 169.0 16 19 4.1e-06 0.0052 17.2 6.9 5 26 543 564 541 564 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF611-206 - 636 3.8e-95 308.4 169.0 17 19 1.6e-10 2.1e-07 31.1 0.5 2 26 568 592 567 592 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF611-206 - 636 3.8e-95 308.4 169.0 18 19 2.7e-11 3.5e-08 33.5 0.7 2 25 596 619 596 620 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF611-206 - 636 3.8e-95 308.4 169.0 19 19 0.0016 2 9.0 3.3 1 14 623 636 623 636 0.96 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZNF611-206 - 636 1.9e-57 188.6 175.1 1 17 0.26 3.3e+02 2.0 0.5 7 20 168 181 162 184 0.79 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF611-206 - 636 1.9e-57 188.6 175.1 2 17 0.048 61 4.3 3.9 1 16 190 205 190 212 0.88 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF611-206 - 636 1.9e-57 188.6 175.1 3 17 1.5e-06 0.0019 18.6 4.3 1 23 218 240 218 240 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF611-206 - 636 1.9e-57 188.6 175.1 4 17 0.00065 0.83 10.2 0.0 1 16 246 261 246 263 0.92 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF611-206 - 636 1.9e-57 188.6 175.1 5 17 2.6e-07 0.00034 20.9 1.8 1 20 274 293 274 295 0.95 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF611-206 - 636 1.9e-57 188.6 175.1 6 17 4.4e-08 5.6e-05 23.4 1.1 1 23 301 323 301 323 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF611-206 - 636 1.9e-57 188.6 175.1 7 17 5.4e-06 0.0069 16.8 1.9 1 23 329 351 329 351 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF611-206 - 636 1.9e-57 188.6 175.1 8 17 1.1e-05 0.014 15.9 8.1 1 23 357 379 357 379 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF611-206 - 636 1.9e-57 188.6 175.1 9 17 8e-06 0.01 16.2 0.1 1 21 385 405 385 406 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF611-206 - 636 1.9e-57 188.6 175.1 10 17 1.2e-07 0.00016 22.0 0.3 1 23 413 435 413 435 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF611-206 - 636 1.9e-57 188.6 175.1 11 17 5.4e-08 6.9e-05 23.1 0.6 1 23 441 463 441 463 0.95 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF611-206 - 636 1.9e-57 188.6 175.1 12 17 4e-05 0.052 14.0 4.4 1 23 469 491 469 491 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF611-206 - 636 1.9e-57 188.6 175.1 13 17 0.00019 0.25 11.9 9.3 1 23 497 519 497 519 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF611-206 - 636 1.9e-57 188.6 175.1 14 17 5.4e-05 0.069 13.6 8.5 1 23 525 547 525 547 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF611-206 - 636 1.9e-57 188.6 175.1 15 17 8.8e-06 0.011 16.1 6.1 1 23 553 575 553 575 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF611-206 - 636 1.9e-57 188.6 175.1 16 17 5e-09 6.4e-06 26.3 0.9 1 23 581 603 581 603 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF611-206 - 636 1.9e-57 188.6 175.1 17 17 4.1e-09 5.3e-06 26.6 4.4 1 23 609 631 609 631 0.99 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZNF611-206 - 636 1.6e-26 90.7 165.2 1 17 0.1 1.3e+02 3.8 0.5 2 23 163 184 162 185 0.77 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF611-206 - 636 1.6e-26 90.7 165.2 2 17 0.15 2e+02 3.3 4.8 1 19 190 208 190 212 0.74 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF611-206 - 636 1.6e-26 90.7 165.2 3 17 4.8e-05 0.061 14.2 3.7 1 23 218 240 218 241 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF611-206 - 636 1.6e-26 90.7 165.2 4 17 0.045 58 4.9 0.0 1 16 246 261 246 263 0.84 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF611-206 - 636 1.6e-26 90.7 165.2 5 17 0.00014 0.18 12.7 1.5 1 20 274 293 274 295 0.91 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF611-206 - 636 1.6e-26 90.7 165.2 6 17 1.5e-05 0.019 15.8 0.8 1 23 301 323 301 324 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF611-206 - 636 1.6e-26 90.7 165.2 7 17 0.00093 1.2 10.2 1.5 1 23 329 351 329 352 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF611-206 - 636 1.6e-26 90.7 165.2 8 17 0.00086 1.1 10.3 5.9 1 23 357 379 357 380 0.88 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF611-206 - 636 1.6e-26 90.7 165.2 9 17 0.0079 10 7.3 0.2 1 19 385 403 385 406 0.78 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF611-206 - 636 1.6e-26 90.7 165.2 10 17 6.1e-05 0.078 13.9 0.2 1 23 413 435 413 436 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF611-206 - 636 1.6e-26 90.7 165.2 11 17 7.7e-06 0.0099 16.7 0.6 1 23 441 463 441 464 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF611-206 - 636 1.6e-26 90.7 165.2 12 17 0.0003 0.38 11.7 4.0 1 23 469 491 469 492 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF611-206 - 636 1.6e-26 90.7 165.2 13 17 0.019 25 6.1 7.9 1 23 497 519 497 520 0.80 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF611-206 - 636 1.6e-26 90.7 165.2 14 17 0.00046 0.59 11.1 7.1 1 23 525 547 525 548 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF611-206 - 636 1.6e-26 90.7 165.2 15 17 0.00096 1.2 10.1 4.4 1 23 553 575 553 576 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF611-206 - 636 1.6e-26 90.7 165.2 16 17 1.1e-05 0.015 16.1 0.5 1 23 581 603 581 604 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF611-206 - 636 1.6e-26 90.7 165.2 17 17 2.3e-05 0.029 15.2 3.1 1 23 609 631 609 632 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF611-206 - 636 1.6e-21 75.8 137.8 1 16 0.00091 1.2 9.3 6.3 2 24 190 212 189 213 0.95 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF611-206 - 636 1.6e-21 75.8 137.8 2 16 5.1e-05 0.065 13.3 4.8 2 24 218 240 218 242 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF611-206 - 636 1.6e-21 75.8 137.8 3 16 0.0044 5.7 7.1 0.2 1 11 245 255 245 257 0.88 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF611-206 - 636 1.6e-21 75.8 137.8 4 16 0.00083 1.1 9.4 1.7 2 22 274 294 274 295 0.85 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF611-206 - 636 1.6e-21 75.8 137.8 5 16 0.00079 1 9.4 0.6 2 21 301 320 301 325 0.77 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF611-206 - 636 1.6e-21 75.8 137.8 6 16 0.039 50 4.1 0.1 2 11 329 338 329 350 0.91 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF611-206 - 636 1.6e-21 75.8 137.8 7 16 0.00023 0.29 11.2 0.9 2 12 357 367 356 372 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF611-206 - 636 1.6e-21 75.8 137.8 8 16 0.0012 1.5 8.9 0.4 2 11 385 394 384 396 0.92 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF611-206 - 636 1.6e-21 75.8 137.8 9 16 0.00027 0.35 10.9 0.3 2 12 413 423 413 435 0.86 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF611-206 - 636 1.6e-21 75.8 137.8 10 16 5.4e-07 0.00069 19.5 0.9 2 24 441 463 441 466 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF611-206 - 636 1.6e-21 75.8 137.8 11 16 0.0048 6.2 6.9 1.9 2 11 469 478 469 491 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF611-206 - 636 1.6e-21 75.8 137.8 12 16 0.0017 2.1 8.4 2.8 2 12 497 507 497 508 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF611-206 - 636 1.6e-21 75.8 137.8 13 16 0.0012 1.5 8.9 6.0 2 24 525 547 525 550 0.88 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF611-206 - 636 1.6e-21 75.8 137.8 14 16 0.00073 0.94 9.6 3.8 2 24 553 575 553 578 0.92 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF611-206 - 636 1.6e-21 75.8 137.8 15 16 0.0016 2 8.5 0.4 2 12 581 591 580 593 0.90 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF611-206 - 636 1.6e-21 75.8 137.8 16 16 0.03 39 4.4 6.3 2 14 609 621 609 631 0.78 C2H2-type zinc finger zf-C2H2_jaz PF12171.8 27 ZNF611-206 - 636 1.1e-11 44.7 94.7 1 15 0.021 27 5.2 2.2 1 15 189 203 189 207 0.91 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF611-206 - 636 1.1e-11 44.7 94.7 2 15 0.0016 2 8.8 0.6 2 18 218 234 217 238 0.85 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF611-206 - 636 1.1e-11 44.7 94.7 3 15 0.26 3.3e+02 1.7 0.1 2 12 246 256 245 262 0.83 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF611-206 - 636 1.1e-11 44.7 94.7 4 15 0.0051 6.5 7.2 1.3 2 18 274 290 273 293 0.86 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF611-206 - 636 1.1e-11 44.7 94.7 5 15 1.4e-05 0.018 15.3 0.2 2 22 301 321 300 321 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF611-206 - 636 1.1e-11 44.7 94.7 6 15 0.048 61 4.1 0.1 2 21 329 348 328 349 0.84 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF611-206 - 636 1.1e-11 44.7 94.7 7 15 0.058 74 3.8 1.8 2 17 357 372 356 375 0.86 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF611-206 - 636 1.1e-11 44.7 94.7 8 15 0.0013 1.6 9.1 0.4 2 21 385 404 384 405 0.87 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF611-206 - 636 1.1e-11 44.7 94.7 9 15 0.043 54 4.2 0.1 2 21 413 432 412 433 0.82 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF611-206 - 636 1.1e-11 44.7 94.7 10 15 2.3e-05 0.03 14.6 0.4 2 23 441 462 440 463 0.91 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF611-206 - 636 1.1e-11 44.7 94.7 11 15 0.011 14 6.1 2.3 2 20 469 487 468 489 0.78 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF611-206 - 636 1.1e-11 44.7 94.7 12 15 0.052 66 4.0 2.0 2 14 497 509 496 515 0.84 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF611-206 - 636 1.1e-11 44.7 94.7 13 15 0.0071 9.1 6.7 1.1 2 18 525 541 524 545 0.84 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF611-206 - 636 1.1e-11 44.7 94.7 14 15 0.00083 1.1 9.7 0.1 2 21 581 600 580 601 0.88 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF611-206 - 636 1.1e-11 44.7 94.7 15 15 0.085 1.1e+02 3.3 0.7 2 20 609 627 608 627 0.88 Zinc-finger double-stranded RNA-binding BolA PF01722.18 76 ZNF611-206 - 636 2.7e-09 37.2 34.7 1 11 5.2 6.6e+03 -2.5 0.0 54 72 31 49 20 52 0.71 BolA-like protein BolA PF01722.18 76 ZNF611-206 - 636 2.7e-09 37.2 34.7 2 11 1.1 1.4e+03 -0.3 0.1 23 50 154 181 144 185 0.79 BolA-like protein BolA PF01722.18 76 ZNF611-206 - 636 2.7e-09 37.2 34.7 3 11 1.5 1.9e+03 -0.8 0.1 18 49 179 208 159 216 0.70 BolA-like protein BolA PF01722.18 76 ZNF611-206 - 636 2.7e-09 37.2 34.7 4 11 1.4 1.8e+03 -0.7 0.0 26 53 213 240 197 246 0.79 BolA-like protein BolA PF01722.18 76 ZNF611-206 - 636 2.7e-09 37.2 34.7 5 11 0.17 2.1e+02 2.3 0.0 26 51 269 294 257 297 0.86 BolA-like protein BolA PF01722.18 76 ZNF611-206 - 636 2.7e-09 37.2 34.7 6 11 3.6e-05 0.046 14.0 1.8 19 55 319 353 284 357 0.87 BolA-like protein BolA PF01722.18 76 ZNF611-206 - 636 2.7e-09 37.2 34.7 7 11 0.0013 1.6 9.0 0.2 16 51 370 405 365 407 0.84 BolA-like protein BolA PF01722.18 76 ZNF611-206 - 636 2.7e-09 37.2 34.7 8 11 0.0041 5.3 7.4 0.1 22 53 459 491 430 493 0.85 BolA-like protein BolA PF01722.18 76 ZNF611-206 - 636 2.7e-09 37.2 34.7 9 11 0.017 21 5.5 1.8 15 52 509 546 503 549 0.86 BolA-like protein BolA PF01722.18 76 ZNF611-206 - 636 2.7e-09 37.2 34.7 10 11 0.00019 0.25 11.6 0.1 25 54 575 604 563 608 0.85 BolA-like protein BolA PF01722.18 76 ZNF611-206 - 636 2.7e-09 37.2 34.7 11 11 0.17 2.1e+02 2.3 0.3 27 53 605 631 600 632 0.83 BolA-like protein zf-met PF12874.7 25 ZNF611-206 - 636 6.8e-09 35.8 117.5 1 15 5.9e-05 0.076 13.4 1.3 1 19 190 208 190 210 0.95 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF611-206 - 636 6.8e-09 35.8 117.5 2 15 0.0035 4.5 7.8 1.5 1 19 218 236 218 238 0.93 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF611-206 - 636 6.8e-09 35.8 117.5 3 15 6.6 8.4e+03 -2.6 0.1 1 10 246 255 246 260 0.86 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF611-206 - 636 6.8e-09 35.8 117.5 4 15 0.02 26 5.4 1.5 1 17 274 290 274 292 0.90 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF611-206 - 636 6.8e-09 35.8 117.5 5 15 0.00016 0.2 12.1 0.5 1 21 301 321 301 324 0.91 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF611-206 - 636 6.8e-09 35.8 117.5 6 15 0.0029 3.7 8.1 0.4 1 19 329 347 329 352 0.87 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF611-206 - 636 6.8e-09 35.8 117.5 7 15 0.024 31 5.1 3.7 1 19 357 375 357 375 0.94 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF611-206 - 636 6.8e-09 35.8 117.5 8 15 0.012 15 6.1 0.3 1 19 385 403 385 405 0.73 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF611-206 - 636 6.8e-09 35.8 117.5 9 15 0.12 1.6e+02 2.9 0.3 1 20 413 432 413 436 0.87 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF611-206 - 636 6.8e-09 35.8 117.5 10 15 0.00012 0.16 12.4 0.6 1 23 441 463 441 464 0.91 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF611-206 - 636 6.8e-09 35.8 117.5 11 15 0.00038 0.48 10.9 3.3 1 21 469 489 469 491 0.92 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF611-206 - 636 6.8e-09 35.8 117.5 12 15 0.13 1.6e+02 2.8 6.3 1 19 497 515 497 519 0.93 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF611-206 - 636 6.8e-09 35.8 117.5 13 15 0.0076 9.7 6.7 3.3 1 19 525 543 525 545 0.94 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF611-206 - 636 6.8e-09 35.8 117.5 14 15 0.0024 3 8.4 0.3 1 21 581 601 581 604 0.90 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF611-206 - 636 6.8e-09 35.8 117.5 15 15 0.037 47 4.6 1.3 1 19 609 627 609 630 0.96 Zinc-finger of C2H2 type Zn-ribbon_8 PF09723.10 40 ZNF611-206 - 636 3.2e-08 33.5 102.7 1 17 1.8 2.3e+03 -1.2 0.0 6 16 162 172 161 183 0.80 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF611-206 - 636 3.2e-08 33.5 102.7 2 17 0.049 63 3.8 3.0 5 20 189 204 189 216 0.77 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF611-206 - 636 3.2e-08 33.5 102.7 3 17 0.0011 1.4 9.1 0.8 6 18 218 230 217 240 0.83 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF611-206 - 636 3.2e-08 33.5 102.7 4 17 0.011 14 5.9 0.0 6 15 246 255 243 269 0.87 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF611-206 - 636 3.2e-08 33.5 102.7 5 17 0.012 15 5.8 7.0 6 33 274 307 273 308 0.87 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF611-206 - 636 3.2e-08 33.5 102.7 6 17 0.0058 7.4 6.8 5.0 6 32 301 334 299 335 0.79 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF611-206 - 636 3.2e-08 33.5 102.7 7 17 3.7e-05 0.047 13.8 1.9 6 35 329 365 328 370 0.88 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF611-206 - 636 3.2e-08 33.5 102.7 8 17 0.0011 1.4 9.1 0.6 6 17 357 368 355 376 0.84 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF611-206 - 636 3.2e-08 33.5 102.7 9 17 0.033 42 4.4 5.1 6 34 385 420 384 421 0.79 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF611-206 - 636 3.2e-08 33.5 102.7 10 17 0.00098 1.3 9.2 5.7 6 34 413 448 412 453 0.83 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF611-206 - 636 3.2e-08 33.5 102.7 11 17 0.0051 6.5 7.0 4.8 6 34 441 476 440 479 0.88 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF611-206 - 636 3.2e-08 33.5 102.7 12 17 0.055 70 3.7 5.7 6 34 469 504 468 510 0.79 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF611-206 - 636 3.2e-08 33.5 102.7 13 17 0.013 17 5.6 7.0 6 38 497 536 496 537 0.77 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF611-206 - 636 3.2e-08 33.5 102.7 14 17 0.0073 9.3 6.5 1.0 6 21 525 540 524 548 0.85 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF611-206 - 636 3.2e-08 33.5 102.7 15 17 0.086 1.1e+02 3.0 5.9 6 18 553 565 552 586 0.73 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF611-206 - 636 3.2e-08 33.5 102.7 16 17 0.0014 1.8 8.8 3.1 6 35 581 617 579 621 0.81 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF611-206 - 636 3.2e-08 33.5 102.7 17 17 0.0021 2.6 8.2 0.5 6 18 609 621 608 630 0.81 Zinc ribbon domain # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF611-206.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF611-206.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF611-206.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF611-206.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF611-206.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:10:46 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF611-207.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF611-207.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF611-207.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF611-207.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF611-207.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:10:47 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF611-208.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF611-208.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF611-208.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF611-208.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF611-208.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:10:47 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- KRAB PF01352.27 42 ZNF611-209 - 64 4.2e-23 80.7 0.0 1 1 3e-27 5.3e-23 80.4 0.0 2 42 24 64 23 64 0.97 KRAB box # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF611-209.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF611-209.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF611-209.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF611-209.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF611-209.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:10:47 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF611-210.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF611-210.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF611-210.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF611-210.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF611-210.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:10:48 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- KRAB PF01352.27 42 ZNF611-211 - 80 2.2e-22 78.4 0.1 1 1 1.7e-26 3e-22 78.0 0.1 2 40 24 62 23 64 0.95 KRAB box # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF611-211.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF611-211.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF611-211.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF611-211.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF611-211.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:10:48 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- KRAB PF01352.27 42 ZNF611-212 - 64 4.2e-23 80.7 0.0 1 1 3e-27 5.3e-23 80.4 0.0 2 42 24 64 23 64 0.97 KRAB box # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF611-212.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF611-212.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF611-212.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF611-212.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF611-212.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:10:48 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF611-213.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF611-213.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF611-213.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF611-213.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF611-213.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:10:49 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF611-214.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF611-214.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF611-214.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF611-214.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF611-214.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:10:49 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZNF611-215 - 636 3.8e-95 308.4 169.0 1 19 0.25 3.2e+02 2.0 0.3 2 17 21 48 20 50 0.69 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF611-215 - 636 3.8e-95 308.4 169.0 2 19 0.043 55 4.4 0.5 8 25 155 172 152 173 0.88 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF611-215 - 636 3.8e-95 308.4 169.0 3 19 9.3e-07 0.0012 19.2 0.8 2 26 177 201 177 201 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF611-215 - 636 3.8e-95 308.4 169.0 4 19 5.9e-08 7.5e-05 23.0 5.9 5 25 208 228 205 229 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF611-215 - 636 3.8e-95 308.4 169.0 5 19 4.6e-07 0.00059 20.2 0.9 5 25 236 256 232 257 0.90 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF611-215 - 636 3.8e-95 308.4 169.0 6 19 2e-06 0.0026 18.1 0.7 10 25 269 284 269 285 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF611-215 - 636 3.8e-95 308.4 169.0 7 19 6.5e-10 8.3e-07 29.2 2.3 5 25 291 311 289 312 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF611-215 - 636 3.8e-95 308.4 169.0 8 19 6.7e-09 8.5e-06 26.0 1.8 4 25 318 339 317 339 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF611-215 - 636 3.8e-95 308.4 169.0 9 19 1.1e-08 1.3e-05 25.3 3.2 2 26 344 368 343 368 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF611-215 - 636 3.8e-95 308.4 169.0 10 19 7.8e-07 0.001 19.4 2.7 5 25 375 395 371 395 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF611-215 - 636 3.8e-95 308.4 169.0 11 19 4.1e-07 0.00053 20.3 1.2 7 25 401 423 400 424 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF611-215 - 636 3.8e-95 308.4 169.0 12 19 9.6e-09 1.2e-05 25.5 0.2 5 25 431 451 427 452 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF611-215 - 636 3.8e-95 308.4 169.0 13 19 1.2e-10 1.6e-07 31.4 1.8 1 25 455 479 455 480 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF611-215 - 636 3.8e-95 308.4 169.0 14 19 3.3e-10 4.2e-07 30.1 3.6 2 26 484 508 483 508 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF611-215 - 636 3.8e-95 308.4 169.0 15 19 8.9e-08 0.00011 22.4 5.1 5 25 515 535 511 536 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF611-215 - 636 3.8e-95 308.4 169.0 16 19 4.1e-06 0.0052 17.2 6.9 5 26 543 564 541 564 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF611-215 - 636 3.8e-95 308.4 169.0 17 19 1.6e-10 2.1e-07 31.1 0.5 2 26 568 592 567 592 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF611-215 - 636 3.8e-95 308.4 169.0 18 19 2.7e-11 3.5e-08 33.5 0.7 2 25 596 619 596 620 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF611-215 - 636 3.8e-95 308.4 169.0 19 19 0.0016 2 9.0 3.3 1 14 623 636 623 636 0.96 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZNF611-215 - 636 1.9e-57 188.6 175.1 1 17 0.26 3.3e+02 2.0 0.5 7 20 168 181 162 184 0.79 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF611-215 - 636 1.9e-57 188.6 175.1 2 17 0.048 61 4.3 3.9 1 16 190 205 190 212 0.88 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF611-215 - 636 1.9e-57 188.6 175.1 3 17 1.5e-06 0.0019 18.6 4.3 1 23 218 240 218 240 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF611-215 - 636 1.9e-57 188.6 175.1 4 17 0.00065 0.83 10.2 0.0 1 16 246 261 246 263 0.92 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF611-215 - 636 1.9e-57 188.6 175.1 5 17 2.6e-07 0.00034 20.9 1.8 1 20 274 293 274 295 0.95 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF611-215 - 636 1.9e-57 188.6 175.1 6 17 4.4e-08 5.6e-05 23.4 1.1 1 23 301 323 301 323 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF611-215 - 636 1.9e-57 188.6 175.1 7 17 5.4e-06 0.0069 16.8 1.9 1 23 329 351 329 351 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF611-215 - 636 1.9e-57 188.6 175.1 8 17 1.1e-05 0.014 15.9 8.1 1 23 357 379 357 379 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF611-215 - 636 1.9e-57 188.6 175.1 9 17 8e-06 0.01 16.2 0.1 1 21 385 405 385 406 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF611-215 - 636 1.9e-57 188.6 175.1 10 17 1.2e-07 0.00016 22.0 0.3 1 23 413 435 413 435 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF611-215 - 636 1.9e-57 188.6 175.1 11 17 5.4e-08 6.9e-05 23.1 0.6 1 23 441 463 441 463 0.95 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF611-215 - 636 1.9e-57 188.6 175.1 12 17 4e-05 0.052 14.0 4.4 1 23 469 491 469 491 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF611-215 - 636 1.9e-57 188.6 175.1 13 17 0.00019 0.25 11.9 9.3 1 23 497 519 497 519 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF611-215 - 636 1.9e-57 188.6 175.1 14 17 5.4e-05 0.069 13.6 8.5 1 23 525 547 525 547 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF611-215 - 636 1.9e-57 188.6 175.1 15 17 8.8e-06 0.011 16.1 6.1 1 23 553 575 553 575 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF611-215 - 636 1.9e-57 188.6 175.1 16 17 5e-09 6.4e-06 26.3 0.9 1 23 581 603 581 603 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF611-215 - 636 1.9e-57 188.6 175.1 17 17 4.1e-09 5.3e-06 26.6 4.4 1 23 609 631 609 631 0.99 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZNF611-215 - 636 1.6e-26 90.7 165.2 1 17 0.1 1.3e+02 3.8 0.5 2 23 163 184 162 185 0.77 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF611-215 - 636 1.6e-26 90.7 165.2 2 17 0.15 2e+02 3.3 4.8 1 19 190 208 190 212 0.74 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF611-215 - 636 1.6e-26 90.7 165.2 3 17 4.8e-05 0.061 14.2 3.7 1 23 218 240 218 241 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF611-215 - 636 1.6e-26 90.7 165.2 4 17 0.045 58 4.9 0.0 1 16 246 261 246 263 0.84 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF611-215 - 636 1.6e-26 90.7 165.2 5 17 0.00014 0.18 12.7 1.5 1 20 274 293 274 295 0.91 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF611-215 - 636 1.6e-26 90.7 165.2 6 17 1.5e-05 0.019 15.8 0.8 1 23 301 323 301 324 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF611-215 - 636 1.6e-26 90.7 165.2 7 17 0.00093 1.2 10.2 1.5 1 23 329 351 329 352 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF611-215 - 636 1.6e-26 90.7 165.2 8 17 0.00086 1.1 10.3 5.9 1 23 357 379 357 380 0.88 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF611-215 - 636 1.6e-26 90.7 165.2 9 17 0.0079 10 7.3 0.2 1 19 385 403 385 406 0.78 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF611-215 - 636 1.6e-26 90.7 165.2 10 17 6.1e-05 0.078 13.9 0.2 1 23 413 435 413 436 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF611-215 - 636 1.6e-26 90.7 165.2 11 17 7.7e-06 0.0099 16.7 0.6 1 23 441 463 441 464 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF611-215 - 636 1.6e-26 90.7 165.2 12 17 0.0003 0.38 11.7 4.0 1 23 469 491 469 492 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF611-215 - 636 1.6e-26 90.7 165.2 13 17 0.019 25 6.1 7.9 1 23 497 519 497 520 0.80 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF611-215 - 636 1.6e-26 90.7 165.2 14 17 0.00046 0.59 11.1 7.1 1 23 525 547 525 548 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF611-215 - 636 1.6e-26 90.7 165.2 15 17 0.00096 1.2 10.1 4.4 1 23 553 575 553 576 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF611-215 - 636 1.6e-26 90.7 165.2 16 17 1.1e-05 0.015 16.1 0.5 1 23 581 603 581 604 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF611-215 - 636 1.6e-26 90.7 165.2 17 17 2.3e-05 0.029 15.2 3.1 1 23 609 631 609 632 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF611-215 - 636 1.6e-21 75.8 137.8 1 16 0.00091 1.2 9.3 6.3 2 24 190 212 189 213 0.95 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF611-215 - 636 1.6e-21 75.8 137.8 2 16 5.1e-05 0.065 13.3 4.8 2 24 218 240 218 242 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF611-215 - 636 1.6e-21 75.8 137.8 3 16 0.0044 5.7 7.1 0.2 1 11 245 255 245 257 0.88 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF611-215 - 636 1.6e-21 75.8 137.8 4 16 0.00083 1.1 9.4 1.7 2 22 274 294 274 295 0.85 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF611-215 - 636 1.6e-21 75.8 137.8 5 16 0.00079 1 9.4 0.6 2 21 301 320 301 325 0.77 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF611-215 - 636 1.6e-21 75.8 137.8 6 16 0.039 50 4.1 0.1 2 11 329 338 329 350 0.91 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF611-215 - 636 1.6e-21 75.8 137.8 7 16 0.00023 0.29 11.2 0.9 2 12 357 367 356 372 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF611-215 - 636 1.6e-21 75.8 137.8 8 16 0.0012 1.5 8.9 0.4 2 11 385 394 384 396 0.92 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF611-215 - 636 1.6e-21 75.8 137.8 9 16 0.00027 0.35 10.9 0.3 2 12 413 423 413 435 0.86 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF611-215 - 636 1.6e-21 75.8 137.8 10 16 5.4e-07 0.00069 19.5 0.9 2 24 441 463 441 466 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF611-215 - 636 1.6e-21 75.8 137.8 11 16 0.0048 6.2 6.9 1.9 2 11 469 478 469 491 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF611-215 - 636 1.6e-21 75.8 137.8 12 16 0.0017 2.1 8.4 2.8 2 12 497 507 497 508 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF611-215 - 636 1.6e-21 75.8 137.8 13 16 0.0012 1.5 8.9 6.0 2 24 525 547 525 550 0.88 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF611-215 - 636 1.6e-21 75.8 137.8 14 16 0.00073 0.94 9.6 3.8 2 24 553 575 553 578 0.92 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF611-215 - 636 1.6e-21 75.8 137.8 15 16 0.0016 2 8.5 0.4 2 12 581 591 580 593 0.90 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF611-215 - 636 1.6e-21 75.8 137.8 16 16 0.03 39 4.4 6.3 2 14 609 621 609 631 0.78 C2H2-type zinc finger zf-C2H2_jaz PF12171.8 27 ZNF611-215 - 636 1.1e-11 44.7 94.7 1 15 0.021 27 5.2 2.2 1 15 189 203 189 207 0.91 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF611-215 - 636 1.1e-11 44.7 94.7 2 15 0.0016 2 8.8 0.6 2 18 218 234 217 238 0.85 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF611-215 - 636 1.1e-11 44.7 94.7 3 15 0.26 3.3e+02 1.7 0.1 2 12 246 256 245 262 0.83 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF611-215 - 636 1.1e-11 44.7 94.7 4 15 0.0051 6.5 7.2 1.3 2 18 274 290 273 293 0.86 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF611-215 - 636 1.1e-11 44.7 94.7 5 15 1.4e-05 0.018 15.3 0.2 2 22 301 321 300 321 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF611-215 - 636 1.1e-11 44.7 94.7 6 15 0.048 61 4.1 0.1 2 21 329 348 328 349 0.84 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF611-215 - 636 1.1e-11 44.7 94.7 7 15 0.058 74 3.8 1.8 2 17 357 372 356 375 0.86 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF611-215 - 636 1.1e-11 44.7 94.7 8 15 0.0013 1.6 9.1 0.4 2 21 385 404 384 405 0.87 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF611-215 - 636 1.1e-11 44.7 94.7 9 15 0.043 54 4.2 0.1 2 21 413 432 412 433 0.82 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF611-215 - 636 1.1e-11 44.7 94.7 10 15 2.3e-05 0.03 14.6 0.4 2 23 441 462 440 463 0.91 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF611-215 - 636 1.1e-11 44.7 94.7 11 15 0.011 14 6.1 2.3 2 20 469 487 468 489 0.78 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF611-215 - 636 1.1e-11 44.7 94.7 12 15 0.052 66 4.0 2.0 2 14 497 509 496 515 0.84 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF611-215 - 636 1.1e-11 44.7 94.7 13 15 0.0071 9.1 6.7 1.1 2 18 525 541 524 545 0.84 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF611-215 - 636 1.1e-11 44.7 94.7 14 15 0.00083 1.1 9.7 0.1 2 21 581 600 580 601 0.88 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF611-215 - 636 1.1e-11 44.7 94.7 15 15 0.085 1.1e+02 3.3 0.7 2 20 609 627 608 627 0.88 Zinc-finger double-stranded RNA-binding BolA PF01722.18 76 ZNF611-215 - 636 2.7e-09 37.2 34.7 1 11 5.2 6.6e+03 -2.5 0.0 54 72 31 49 20 52 0.71 BolA-like protein BolA PF01722.18 76 ZNF611-215 - 636 2.7e-09 37.2 34.7 2 11 1.1 1.4e+03 -0.3 0.1 23 50 154 181 144 185 0.79 BolA-like protein BolA PF01722.18 76 ZNF611-215 - 636 2.7e-09 37.2 34.7 3 11 1.5 1.9e+03 -0.8 0.1 18 49 179 208 159 216 0.70 BolA-like protein BolA PF01722.18 76 ZNF611-215 - 636 2.7e-09 37.2 34.7 4 11 1.4 1.8e+03 -0.7 0.0 26 53 213 240 197 246 0.79 BolA-like protein BolA PF01722.18 76 ZNF611-215 - 636 2.7e-09 37.2 34.7 5 11 0.17 2.1e+02 2.3 0.0 26 51 269 294 257 297 0.86 BolA-like protein BolA PF01722.18 76 ZNF611-215 - 636 2.7e-09 37.2 34.7 6 11 3.6e-05 0.046 14.0 1.8 19 55 319 353 284 357 0.87 BolA-like protein BolA PF01722.18 76 ZNF611-215 - 636 2.7e-09 37.2 34.7 7 11 0.0013 1.6 9.0 0.2 16 51 370 405 365 407 0.84 BolA-like protein BolA PF01722.18 76 ZNF611-215 - 636 2.7e-09 37.2 34.7 8 11 0.0041 5.3 7.4 0.1 22 53 459 491 430 493 0.85 BolA-like protein BolA PF01722.18 76 ZNF611-215 - 636 2.7e-09 37.2 34.7 9 11 0.017 21 5.5 1.8 15 52 509 546 503 549 0.86 BolA-like protein BolA PF01722.18 76 ZNF611-215 - 636 2.7e-09 37.2 34.7 10 11 0.00019 0.25 11.6 0.1 25 54 575 604 563 608 0.85 BolA-like protein BolA PF01722.18 76 ZNF611-215 - 636 2.7e-09 37.2 34.7 11 11 0.17 2.1e+02 2.3 0.3 27 53 605 631 600 632 0.83 BolA-like protein zf-met PF12874.7 25 ZNF611-215 - 636 6.8e-09 35.8 117.5 1 15 5.9e-05 0.076 13.4 1.3 1 19 190 208 190 210 0.95 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF611-215 - 636 6.8e-09 35.8 117.5 2 15 0.0035 4.5 7.8 1.5 1 19 218 236 218 238 0.93 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF611-215 - 636 6.8e-09 35.8 117.5 3 15 6.6 8.4e+03 -2.6 0.1 1 10 246 255 246 260 0.86 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF611-215 - 636 6.8e-09 35.8 117.5 4 15 0.02 26 5.4 1.5 1 17 274 290 274 292 0.90 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF611-215 - 636 6.8e-09 35.8 117.5 5 15 0.00016 0.2 12.1 0.5 1 21 301 321 301 324 0.91 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF611-215 - 636 6.8e-09 35.8 117.5 6 15 0.0029 3.7 8.1 0.4 1 19 329 347 329 352 0.87 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF611-215 - 636 6.8e-09 35.8 117.5 7 15 0.024 31 5.1 3.7 1 19 357 375 357 375 0.94 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF611-215 - 636 6.8e-09 35.8 117.5 8 15 0.012 15 6.1 0.3 1 19 385 403 385 405 0.73 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF611-215 - 636 6.8e-09 35.8 117.5 9 15 0.12 1.6e+02 2.9 0.3 1 20 413 432 413 436 0.87 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF611-215 - 636 6.8e-09 35.8 117.5 10 15 0.00012 0.16 12.4 0.6 1 23 441 463 441 464 0.91 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF611-215 - 636 6.8e-09 35.8 117.5 11 15 0.00038 0.48 10.9 3.3 1 21 469 489 469 491 0.92 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF611-215 - 636 6.8e-09 35.8 117.5 12 15 0.13 1.6e+02 2.8 6.3 1 19 497 515 497 519 0.93 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF611-215 - 636 6.8e-09 35.8 117.5 13 15 0.0076 9.7 6.7 3.3 1 19 525 543 525 545 0.94 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF611-215 - 636 6.8e-09 35.8 117.5 14 15 0.0024 3 8.4 0.3 1 21 581 601 581 604 0.90 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF611-215 - 636 6.8e-09 35.8 117.5 15 15 0.037 47 4.6 1.3 1 19 609 627 609 630 0.96 Zinc-finger of C2H2 type Zn-ribbon_8 PF09723.10 40 ZNF611-215 - 636 3.2e-08 33.5 102.7 1 17 1.8 2.3e+03 -1.2 0.0 6 16 162 172 161 183 0.80 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF611-215 - 636 3.2e-08 33.5 102.7 2 17 0.049 63 3.8 3.0 5 20 189 204 189 216 0.77 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF611-215 - 636 3.2e-08 33.5 102.7 3 17 0.0011 1.4 9.1 0.8 6 18 218 230 217 240 0.83 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF611-215 - 636 3.2e-08 33.5 102.7 4 17 0.011 14 5.9 0.0 6 15 246 255 243 269 0.87 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF611-215 - 636 3.2e-08 33.5 102.7 5 17 0.012 15 5.8 7.0 6 33 274 307 273 308 0.87 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF611-215 - 636 3.2e-08 33.5 102.7 6 17 0.0058 7.4 6.8 5.0 6 32 301 334 299 335 0.79 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF611-215 - 636 3.2e-08 33.5 102.7 7 17 3.7e-05 0.047 13.8 1.9 6 35 329 365 328 370 0.88 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF611-215 - 636 3.2e-08 33.5 102.7 8 17 0.0011 1.4 9.1 0.6 6 17 357 368 355 376 0.84 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF611-215 - 636 3.2e-08 33.5 102.7 9 17 0.033 42 4.4 5.1 6 34 385 420 384 421 0.79 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF611-215 - 636 3.2e-08 33.5 102.7 10 17 0.00098 1.3 9.2 5.7 6 34 413 448 412 453 0.83 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF611-215 - 636 3.2e-08 33.5 102.7 11 17 0.0051 6.5 7.0 4.8 6 34 441 476 440 479 0.88 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF611-215 - 636 3.2e-08 33.5 102.7 12 17 0.055 70 3.7 5.7 6 34 469 504 468 510 0.79 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF611-215 - 636 3.2e-08 33.5 102.7 13 17 0.013 17 5.6 7.0 6 38 497 536 496 537 0.77 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF611-215 - 636 3.2e-08 33.5 102.7 14 17 0.0073 9.3 6.5 1.0 6 21 525 540 524 548 0.85 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF611-215 - 636 3.2e-08 33.5 102.7 15 17 0.086 1.1e+02 3.0 5.9 6 18 553 565 552 586 0.73 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF611-215 - 636 3.2e-08 33.5 102.7 16 17 0.0014 1.8 8.8 3.1 6 35 581 617 579 621 0.81 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF611-215 - 636 3.2e-08 33.5 102.7 17 17 0.0021 2.6 8.2 0.5 6 18 609 621 608 630 0.81 Zinc ribbon domain # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF611-215.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF611-215.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF611-215.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF611-215.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF611-215.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:10:50 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF611-216.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF611-216.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF611-216.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF611-216.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF611-216.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:10:50 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF611-217.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF611-217.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF611-217.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF611-217.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF611-217.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:10:50 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF611-218.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF611-218.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF611-218.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF611-218.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF611-218.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:10:51 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZNF611-219 - 636 3.8e-95 308.4 169.0 1 19 0.25 3.2e+02 2.0 0.3 2 17 21 48 20 50 0.69 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF611-219 - 636 3.8e-95 308.4 169.0 2 19 0.043 55 4.4 0.5 8 25 155 172 152 173 0.88 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF611-219 - 636 3.8e-95 308.4 169.0 3 19 9.3e-07 0.0012 19.2 0.8 2 26 177 201 177 201 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF611-219 - 636 3.8e-95 308.4 169.0 4 19 5.9e-08 7.5e-05 23.0 5.9 5 25 208 228 205 229 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF611-219 - 636 3.8e-95 308.4 169.0 5 19 4.6e-07 0.00059 20.2 0.9 5 25 236 256 232 257 0.90 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF611-219 - 636 3.8e-95 308.4 169.0 6 19 2e-06 0.0026 18.1 0.7 10 25 269 284 269 285 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF611-219 - 636 3.8e-95 308.4 169.0 7 19 6.5e-10 8.3e-07 29.2 2.3 5 25 291 311 289 312 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF611-219 - 636 3.8e-95 308.4 169.0 8 19 6.7e-09 8.5e-06 26.0 1.8 4 25 318 339 317 339 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF611-219 - 636 3.8e-95 308.4 169.0 9 19 1.1e-08 1.3e-05 25.3 3.2 2 26 344 368 343 368 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF611-219 - 636 3.8e-95 308.4 169.0 10 19 7.8e-07 0.001 19.4 2.7 5 25 375 395 371 395 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF611-219 - 636 3.8e-95 308.4 169.0 11 19 4.1e-07 0.00053 20.3 1.2 7 25 401 423 400 424 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF611-219 - 636 3.8e-95 308.4 169.0 12 19 9.6e-09 1.2e-05 25.5 0.2 5 25 431 451 427 452 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF611-219 - 636 3.8e-95 308.4 169.0 13 19 1.2e-10 1.6e-07 31.4 1.8 1 25 455 479 455 480 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF611-219 - 636 3.8e-95 308.4 169.0 14 19 3.3e-10 4.2e-07 30.1 3.6 2 26 484 508 483 508 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF611-219 - 636 3.8e-95 308.4 169.0 15 19 8.9e-08 0.00011 22.4 5.1 5 25 515 535 511 536 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF611-219 - 636 3.8e-95 308.4 169.0 16 19 4.1e-06 0.0052 17.2 6.9 5 26 543 564 541 564 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF611-219 - 636 3.8e-95 308.4 169.0 17 19 1.6e-10 2.1e-07 31.1 0.5 2 26 568 592 567 592 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF611-219 - 636 3.8e-95 308.4 169.0 18 19 2.7e-11 3.5e-08 33.5 0.7 2 25 596 619 596 620 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF611-219 - 636 3.8e-95 308.4 169.0 19 19 0.0016 2 9.0 3.3 1 14 623 636 623 636 0.96 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZNF611-219 - 636 1.9e-57 188.6 175.1 1 17 0.26 3.3e+02 2.0 0.5 7 20 168 181 162 184 0.79 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF611-219 - 636 1.9e-57 188.6 175.1 2 17 0.048 61 4.3 3.9 1 16 190 205 190 212 0.88 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF611-219 - 636 1.9e-57 188.6 175.1 3 17 1.5e-06 0.0019 18.6 4.3 1 23 218 240 218 240 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF611-219 - 636 1.9e-57 188.6 175.1 4 17 0.00065 0.83 10.2 0.0 1 16 246 261 246 263 0.92 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF611-219 - 636 1.9e-57 188.6 175.1 5 17 2.6e-07 0.00034 20.9 1.8 1 20 274 293 274 295 0.95 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF611-219 - 636 1.9e-57 188.6 175.1 6 17 4.4e-08 5.6e-05 23.4 1.1 1 23 301 323 301 323 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF611-219 - 636 1.9e-57 188.6 175.1 7 17 5.4e-06 0.0069 16.8 1.9 1 23 329 351 329 351 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF611-219 - 636 1.9e-57 188.6 175.1 8 17 1.1e-05 0.014 15.9 8.1 1 23 357 379 357 379 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF611-219 - 636 1.9e-57 188.6 175.1 9 17 8e-06 0.01 16.2 0.1 1 21 385 405 385 406 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF611-219 - 636 1.9e-57 188.6 175.1 10 17 1.2e-07 0.00016 22.0 0.3 1 23 413 435 413 435 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF611-219 - 636 1.9e-57 188.6 175.1 11 17 5.4e-08 6.9e-05 23.1 0.6 1 23 441 463 441 463 0.95 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF611-219 - 636 1.9e-57 188.6 175.1 12 17 4e-05 0.052 14.0 4.4 1 23 469 491 469 491 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF611-219 - 636 1.9e-57 188.6 175.1 13 17 0.00019 0.25 11.9 9.3 1 23 497 519 497 519 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF611-219 - 636 1.9e-57 188.6 175.1 14 17 5.4e-05 0.069 13.6 8.5 1 23 525 547 525 547 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF611-219 - 636 1.9e-57 188.6 175.1 15 17 8.8e-06 0.011 16.1 6.1 1 23 553 575 553 575 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF611-219 - 636 1.9e-57 188.6 175.1 16 17 5e-09 6.4e-06 26.3 0.9 1 23 581 603 581 603 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF611-219 - 636 1.9e-57 188.6 175.1 17 17 4.1e-09 5.3e-06 26.6 4.4 1 23 609 631 609 631 0.99 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZNF611-219 - 636 1.6e-26 90.7 165.2 1 17 0.1 1.3e+02 3.8 0.5 2 23 163 184 162 185 0.77 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF611-219 - 636 1.6e-26 90.7 165.2 2 17 0.15 2e+02 3.3 4.8 1 19 190 208 190 212 0.74 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF611-219 - 636 1.6e-26 90.7 165.2 3 17 4.8e-05 0.061 14.2 3.7 1 23 218 240 218 241 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF611-219 - 636 1.6e-26 90.7 165.2 4 17 0.045 58 4.9 0.0 1 16 246 261 246 263 0.84 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF611-219 - 636 1.6e-26 90.7 165.2 5 17 0.00014 0.18 12.7 1.5 1 20 274 293 274 295 0.91 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF611-219 - 636 1.6e-26 90.7 165.2 6 17 1.5e-05 0.019 15.8 0.8 1 23 301 323 301 324 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF611-219 - 636 1.6e-26 90.7 165.2 7 17 0.00093 1.2 10.2 1.5 1 23 329 351 329 352 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF611-219 - 636 1.6e-26 90.7 165.2 8 17 0.00086 1.1 10.3 5.9 1 23 357 379 357 380 0.88 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF611-219 - 636 1.6e-26 90.7 165.2 9 17 0.0079 10 7.3 0.2 1 19 385 403 385 406 0.78 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF611-219 - 636 1.6e-26 90.7 165.2 10 17 6.1e-05 0.078 13.9 0.2 1 23 413 435 413 436 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF611-219 - 636 1.6e-26 90.7 165.2 11 17 7.7e-06 0.0099 16.7 0.6 1 23 441 463 441 464 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF611-219 - 636 1.6e-26 90.7 165.2 12 17 0.0003 0.38 11.7 4.0 1 23 469 491 469 492 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF611-219 - 636 1.6e-26 90.7 165.2 13 17 0.019 25 6.1 7.9 1 23 497 519 497 520 0.80 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF611-219 - 636 1.6e-26 90.7 165.2 14 17 0.00046 0.59 11.1 7.1 1 23 525 547 525 548 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF611-219 - 636 1.6e-26 90.7 165.2 15 17 0.00096 1.2 10.1 4.4 1 23 553 575 553 576 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF611-219 - 636 1.6e-26 90.7 165.2 16 17 1.1e-05 0.015 16.1 0.5 1 23 581 603 581 604 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF611-219 - 636 1.6e-26 90.7 165.2 17 17 2.3e-05 0.029 15.2 3.1 1 23 609 631 609 632 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF611-219 - 636 1.6e-21 75.8 137.8 1 16 0.00091 1.2 9.3 6.3 2 24 190 212 189 213 0.95 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF611-219 - 636 1.6e-21 75.8 137.8 2 16 5.1e-05 0.065 13.3 4.8 2 24 218 240 218 242 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF611-219 - 636 1.6e-21 75.8 137.8 3 16 0.0044 5.7 7.1 0.2 1 11 245 255 245 257 0.88 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF611-219 - 636 1.6e-21 75.8 137.8 4 16 0.00083 1.1 9.4 1.7 2 22 274 294 274 295 0.85 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF611-219 - 636 1.6e-21 75.8 137.8 5 16 0.00079 1 9.4 0.6 2 21 301 320 301 325 0.77 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF611-219 - 636 1.6e-21 75.8 137.8 6 16 0.039 50 4.1 0.1 2 11 329 338 329 350 0.91 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF611-219 - 636 1.6e-21 75.8 137.8 7 16 0.00023 0.29 11.2 0.9 2 12 357 367 356 372 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF611-219 - 636 1.6e-21 75.8 137.8 8 16 0.0012 1.5 8.9 0.4 2 11 385 394 384 396 0.92 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF611-219 - 636 1.6e-21 75.8 137.8 9 16 0.00027 0.35 10.9 0.3 2 12 413 423 413 435 0.86 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF611-219 - 636 1.6e-21 75.8 137.8 10 16 5.4e-07 0.00069 19.5 0.9 2 24 441 463 441 466 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF611-219 - 636 1.6e-21 75.8 137.8 11 16 0.0048 6.2 6.9 1.9 2 11 469 478 469 491 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF611-219 - 636 1.6e-21 75.8 137.8 12 16 0.0017 2.1 8.4 2.8 2 12 497 507 497 508 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF611-219 - 636 1.6e-21 75.8 137.8 13 16 0.0012 1.5 8.9 6.0 2 24 525 547 525 550 0.88 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF611-219 - 636 1.6e-21 75.8 137.8 14 16 0.00073 0.94 9.6 3.8 2 24 553 575 553 578 0.92 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF611-219 - 636 1.6e-21 75.8 137.8 15 16 0.0016 2 8.5 0.4 2 12 581 591 580 593 0.90 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF611-219 - 636 1.6e-21 75.8 137.8 16 16 0.03 39 4.4 6.3 2 14 609 621 609 631 0.78 C2H2-type zinc finger zf-C2H2_jaz PF12171.8 27 ZNF611-219 - 636 1.1e-11 44.7 94.7 1 15 0.021 27 5.2 2.2 1 15 189 203 189 207 0.91 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF611-219 - 636 1.1e-11 44.7 94.7 2 15 0.0016 2 8.8 0.6 2 18 218 234 217 238 0.85 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF611-219 - 636 1.1e-11 44.7 94.7 3 15 0.26 3.3e+02 1.7 0.1 2 12 246 256 245 262 0.83 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF611-219 - 636 1.1e-11 44.7 94.7 4 15 0.0051 6.5 7.2 1.3 2 18 274 290 273 293 0.86 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF611-219 - 636 1.1e-11 44.7 94.7 5 15 1.4e-05 0.018 15.3 0.2 2 22 301 321 300 321 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF611-219 - 636 1.1e-11 44.7 94.7 6 15 0.048 61 4.1 0.1 2 21 329 348 328 349 0.84 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF611-219 - 636 1.1e-11 44.7 94.7 7 15 0.058 74 3.8 1.8 2 17 357 372 356 375 0.86 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF611-219 - 636 1.1e-11 44.7 94.7 8 15 0.0013 1.6 9.1 0.4 2 21 385 404 384 405 0.87 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF611-219 - 636 1.1e-11 44.7 94.7 9 15 0.043 54 4.2 0.1 2 21 413 432 412 433 0.82 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF611-219 - 636 1.1e-11 44.7 94.7 10 15 2.3e-05 0.03 14.6 0.4 2 23 441 462 440 463 0.91 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF611-219 - 636 1.1e-11 44.7 94.7 11 15 0.011 14 6.1 2.3 2 20 469 487 468 489 0.78 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF611-219 - 636 1.1e-11 44.7 94.7 12 15 0.052 66 4.0 2.0 2 14 497 509 496 515 0.84 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF611-219 - 636 1.1e-11 44.7 94.7 13 15 0.0071 9.1 6.7 1.1 2 18 525 541 524 545 0.84 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF611-219 - 636 1.1e-11 44.7 94.7 14 15 0.00083 1.1 9.7 0.1 2 21 581 600 580 601 0.88 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF611-219 - 636 1.1e-11 44.7 94.7 15 15 0.085 1.1e+02 3.3 0.7 2 20 609 627 608 627 0.88 Zinc-finger double-stranded RNA-binding BolA PF01722.18 76 ZNF611-219 - 636 2.7e-09 37.2 34.7 1 11 5.2 6.6e+03 -2.5 0.0 54 72 31 49 20 52 0.71 BolA-like protein BolA PF01722.18 76 ZNF611-219 - 636 2.7e-09 37.2 34.7 2 11 1.1 1.4e+03 -0.3 0.1 23 50 154 181 144 185 0.79 BolA-like protein BolA PF01722.18 76 ZNF611-219 - 636 2.7e-09 37.2 34.7 3 11 1.5 1.9e+03 -0.8 0.1 18 49 179 208 159 216 0.70 BolA-like protein BolA PF01722.18 76 ZNF611-219 - 636 2.7e-09 37.2 34.7 4 11 1.4 1.8e+03 -0.7 0.0 26 53 213 240 197 246 0.79 BolA-like protein BolA PF01722.18 76 ZNF611-219 - 636 2.7e-09 37.2 34.7 5 11 0.17 2.1e+02 2.3 0.0 26 51 269 294 257 297 0.86 BolA-like protein BolA PF01722.18 76 ZNF611-219 - 636 2.7e-09 37.2 34.7 6 11 3.6e-05 0.046 14.0 1.8 19 55 319 353 284 357 0.87 BolA-like protein BolA PF01722.18 76 ZNF611-219 - 636 2.7e-09 37.2 34.7 7 11 0.0013 1.6 9.0 0.2 16 51 370 405 365 407 0.84 BolA-like protein BolA PF01722.18 76 ZNF611-219 - 636 2.7e-09 37.2 34.7 8 11 0.0041 5.3 7.4 0.1 22 53 459 491 430 493 0.85 BolA-like protein BolA PF01722.18 76 ZNF611-219 - 636 2.7e-09 37.2 34.7 9 11 0.017 21 5.5 1.8 15 52 509 546 503 549 0.86 BolA-like protein BolA PF01722.18 76 ZNF611-219 - 636 2.7e-09 37.2 34.7 10 11 0.00019 0.25 11.6 0.1 25 54 575 604 563 608 0.85 BolA-like protein BolA PF01722.18 76 ZNF611-219 - 636 2.7e-09 37.2 34.7 11 11 0.17 2.1e+02 2.3 0.3 27 53 605 631 600 632 0.83 BolA-like protein zf-met PF12874.7 25 ZNF611-219 - 636 6.8e-09 35.8 117.5 1 15 5.9e-05 0.076 13.4 1.3 1 19 190 208 190 210 0.95 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF611-219 - 636 6.8e-09 35.8 117.5 2 15 0.0035 4.5 7.8 1.5 1 19 218 236 218 238 0.93 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF611-219 - 636 6.8e-09 35.8 117.5 3 15 6.6 8.4e+03 -2.6 0.1 1 10 246 255 246 260 0.86 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF611-219 - 636 6.8e-09 35.8 117.5 4 15 0.02 26 5.4 1.5 1 17 274 290 274 292 0.90 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF611-219 - 636 6.8e-09 35.8 117.5 5 15 0.00016 0.2 12.1 0.5 1 21 301 321 301 324 0.91 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF611-219 - 636 6.8e-09 35.8 117.5 6 15 0.0029 3.7 8.1 0.4 1 19 329 347 329 352 0.87 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF611-219 - 636 6.8e-09 35.8 117.5 7 15 0.024 31 5.1 3.7 1 19 357 375 357 375 0.94 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF611-219 - 636 6.8e-09 35.8 117.5 8 15 0.012 15 6.1 0.3 1 19 385 403 385 405 0.73 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF611-219 - 636 6.8e-09 35.8 117.5 9 15 0.12 1.6e+02 2.9 0.3 1 20 413 432 413 436 0.87 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF611-219 - 636 6.8e-09 35.8 117.5 10 15 0.00012 0.16 12.4 0.6 1 23 441 463 441 464 0.91 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF611-219 - 636 6.8e-09 35.8 117.5 11 15 0.00038 0.48 10.9 3.3 1 21 469 489 469 491 0.92 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF611-219 - 636 6.8e-09 35.8 117.5 12 15 0.13 1.6e+02 2.8 6.3 1 19 497 515 497 519 0.93 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF611-219 - 636 6.8e-09 35.8 117.5 13 15 0.0076 9.7 6.7 3.3 1 19 525 543 525 545 0.94 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF611-219 - 636 6.8e-09 35.8 117.5 14 15 0.0024 3 8.4 0.3 1 21 581 601 581 604 0.90 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF611-219 - 636 6.8e-09 35.8 117.5 15 15 0.037 47 4.6 1.3 1 19 609 627 609 630 0.96 Zinc-finger of C2H2 type Zn-ribbon_8 PF09723.10 40 ZNF611-219 - 636 3.2e-08 33.5 102.7 1 17 1.8 2.3e+03 -1.2 0.0 6 16 162 172 161 183 0.80 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF611-219 - 636 3.2e-08 33.5 102.7 2 17 0.049 63 3.8 3.0 5 20 189 204 189 216 0.77 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF611-219 - 636 3.2e-08 33.5 102.7 3 17 0.0011 1.4 9.1 0.8 6 18 218 230 217 240 0.83 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF611-219 - 636 3.2e-08 33.5 102.7 4 17 0.011 14 5.9 0.0 6 15 246 255 243 269 0.87 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF611-219 - 636 3.2e-08 33.5 102.7 5 17 0.012 15 5.8 7.0 6 33 274 307 273 308 0.87 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF611-219 - 636 3.2e-08 33.5 102.7 6 17 0.0058 7.4 6.8 5.0 6 32 301 334 299 335 0.79 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF611-219 - 636 3.2e-08 33.5 102.7 7 17 3.7e-05 0.047 13.8 1.9 6 35 329 365 328 370 0.88 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF611-219 - 636 3.2e-08 33.5 102.7 8 17 0.0011 1.4 9.1 0.6 6 17 357 368 355 376 0.84 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF611-219 - 636 3.2e-08 33.5 102.7 9 17 0.033 42 4.4 5.1 6 34 385 420 384 421 0.79 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF611-219 - 636 3.2e-08 33.5 102.7 10 17 0.00098 1.3 9.2 5.7 6 34 413 448 412 453 0.83 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF611-219 - 636 3.2e-08 33.5 102.7 11 17 0.0051 6.5 7.0 4.8 6 34 441 476 440 479 0.88 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF611-219 - 636 3.2e-08 33.5 102.7 12 17 0.055 70 3.7 5.7 6 34 469 504 468 510 0.79 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF611-219 - 636 3.2e-08 33.5 102.7 13 17 0.013 17 5.6 7.0 6 38 497 536 496 537 0.77 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF611-219 - 636 3.2e-08 33.5 102.7 14 17 0.0073 9.3 6.5 1.0 6 21 525 540 524 548 0.85 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF611-219 - 636 3.2e-08 33.5 102.7 15 17 0.086 1.1e+02 3.0 5.9 6 18 553 565 552 586 0.73 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF611-219 - 636 3.2e-08 33.5 102.7 16 17 0.0014 1.8 8.8 3.1 6 35 581 617 579 621 0.81 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF611-219 - 636 3.2e-08 33.5 102.7 17 17 0.0021 2.6 8.2 0.5 6 18 609 621 608 630 0.81 Zinc ribbon domain # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF611-219.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF611-219.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF611-219.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF611-219.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF611-219.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:10:51 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF611-220.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF611-220.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF611-220.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF611-220.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF611-220.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:10:52 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZNF613-201 - 617 1.8e-85 277.9 73.4 1 12 1.2e-05 0.015 15.7 0.5 4 25 193 214 191 215 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF613-201 - 617 1.8e-85 277.9 73.4 2 12 6.3e-10 7.6e-07 29.3 0.4 2 25 219 242 218 243 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF613-201 - 617 1.8e-85 277.9 73.4 3 12 5.3e-12 6.3e-09 35.9 0.5 1 24 246 269 246 270 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF613-201 - 617 1.8e-85 277.9 73.4 4 12 1.1e-07 0.00013 22.2 0.1 2 24 275 297 274 299 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF613-201 - 617 1.8e-85 277.9 73.4 5 12 6.6e-10 7.8e-07 29.2 0.5 2 25 303 326 302 327 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF613-201 - 617 1.8e-85 277.9 73.4 6 12 1.1e-11 1.3e-08 34.9 1.1 2 24 331 353 330 354 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF613-201 - 617 1.8e-85 277.9 73.4 7 12 8e-06 0.0095 16.3 0.1 2 24 359 381 358 383 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF613-201 - 617 1.8e-85 277.9 73.4 8 12 2.6e-08 3.1e-05 24.2 0.0 1 24 386 409 386 411 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF613-201 - 617 1.8e-85 277.9 73.4 9 12 6.4e-10 7.7e-07 29.3 0.2 2 25 415 438 414 439 0.90 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF613-201 - 617 1.8e-85 277.9 73.4 10 12 5.2e-08 6.2e-05 23.2 3.4 3 26 444 467 443 467 0.90 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF613-201 - 617 1.8e-85 277.9 73.4 11 12 3.9e-11 4.7e-08 33.1 0.1 2 24 471 493 470 494 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF613-201 - 617 1.8e-85 277.9 73.4 12 12 1.2e-10 1.4e-07 31.6 1.1 2 26 499 523 499 523 0.97 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZNF613-201 - 617 1.8e-60 198.2 88.4 1 13 0.15 1.8e+02 2.9 0.0 9 22 184 197 182 197 0.87 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF613-201 - 617 1.8e-60 198.2 88.4 2 13 4.5e-05 0.054 14.0 1.5 1 23 204 226 204 226 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF613-201 - 617 1.8e-60 198.2 88.4 3 13 5.1e-08 6e-05 23.3 0.6 3 23 234 254 234 254 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF613-201 - 617 1.8e-60 198.2 88.4 4 13 6.3e-07 0.00076 19.8 0.3 1 23 260 282 260 282 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF613-201 - 617 1.8e-60 198.2 88.4 5 13 1.4e-07 0.00017 21.9 0.3 1 23 288 310 288 310 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF613-201 - 617 1.8e-60 198.2 88.4 6 13 1.6e-06 0.0019 18.5 1.7 3 23 318 338 318 338 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF613-201 - 617 1.8e-60 198.2 88.4 7 13 1.5e-06 0.0018 18.7 0.3 1 23 344 366 344 366 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF613-201 - 617 1.8e-60 198.2 88.4 8 13 1.5e-08 1.8e-05 24.9 0.1 1 23 372 394 372 394 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF613-201 - 617 1.8e-60 198.2 88.4 9 13 5.3e-08 6.3e-05 23.2 0.1 1 23 400 422 400 422 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF613-201 - 617 1.8e-60 198.2 88.4 10 13 2.5e-07 0.0003 21.1 2.3 1 23 428 450 428 450 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF613-201 - 617 1.8e-60 198.2 88.4 11 13 7.8e-08 9.3e-05 22.7 2.8 1 23 456 478 456 478 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF613-201 - 617 1.8e-60 198.2 88.4 12 13 3.8e-09 4.5e-06 26.8 4.3 1 23 484 506 484 506 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF613-201 - 617 1.8e-60 198.2 88.4 13 13 7.3e-05 0.088 13.3 2.3 3 23 514 535 512 535 0.90 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZNF613-201 - 617 1.4e-30 103.3 87.9 1 14 8.3 9.9e+03 -2.0 0.0 14 23 81 90 74 91 0.73 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF613-201 - 617 1.4e-30 103.3 87.9 2 14 7.3 8.8e+03 -1.9 0.0 10 22 185 197 182 198 0.79 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF613-201 - 617 1.4e-30 103.3 87.9 3 14 0.00029 0.34 11.9 1.4 1 23 204 226 204 227 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF613-201 - 617 1.4e-30 103.3 87.9 4 14 1e-05 0.013 16.3 0.8 3 23 234 254 232 255 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF613-201 - 617 1.4e-30 103.3 87.9 5 14 0.00043 0.51 11.3 0.4 1 23 260 282 260 283 0.88 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF613-201 - 617 1.4e-30 103.3 87.9 6 14 3.3e-05 0.039 14.8 0.2 1 23 288 310 288 311 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF613-201 - 617 1.4e-30 103.3 87.9 7 14 0.00012 0.14 13.1 1.9 3 23 318 338 316 339 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF613-201 - 617 1.4e-30 103.3 87.9 8 14 0.00015 0.18 12.7 0.4 1 23 344 366 344 367 0.89 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF613-201 - 617 1.4e-30 103.3 87.9 9 14 0.00012 0.14 13.1 0.0 1 23 372 394 372 395 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF613-201 - 617 1.4e-30 103.3 87.9 10 14 2.9e-05 0.035 14.9 0.1 1 23 400 422 400 423 0.97 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF613-201 - 617 1.4e-30 103.3 87.9 11 14 0.0001 0.12 13.2 2.1 1 23 428 450 428 451 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF613-201 - 617 1.4e-30 103.3 87.9 12 14 0.00019 0.23 12.4 2.5 1 23 456 478 456 479 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF613-201 - 617 1.4e-30 103.3 87.9 13 14 2.6e-06 0.0032 18.2 2.7 1 23 484 506 484 507 0.97 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF613-201 - 617 1.4e-30 103.3 87.9 14 14 0.033 39 5.5 2.4 2 23 513 534 512 535 0.83 C2H2-type zinc finger KRAB PF01352.27 42 ZNF613-201 - 617 5.5e-25 86.7 0.6 1 1 9.5e-28 1.1e-24 85.7 0.6 1 42 7 48 7 48 0.98 KRAB box Zn-ribbon_8 PF09723.10 40 ZNF613-201 - 617 2e-09 37.4 48.7 1 10 0.0013 1.5 9.0 0.5 7 38 205 243 203 245 0.88 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF613-201 - 617 2e-09 37.4 48.7 2 10 7e-05 0.084 13.0 1.6 6 34 260 295 259 301 0.92 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF613-201 - 617 2e-09 37.4 48.7 3 10 0.00062 0.74 10.0 0.6 6 38 288 327 287 329 0.88 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF613-201 - 617 2e-09 37.4 48.7 4 10 0.055 65 3.8 3.9 8 34 318 351 316 354 0.74 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF613-201 - 617 2e-09 37.4 48.7 5 10 0.001 1.2 9.3 3.5 6 34 344 379 342 379 0.93 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF613-201 - 617 2e-09 37.4 48.7 6 10 1.7e-05 0.02 15.0 0.1 6 34 372 407 370 412 0.92 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF613-201 - 617 2e-09 37.4 48.7 7 10 0.0018 2.1 8.5 5.1 6 35 428 464 427 469 0.88 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF613-201 - 617 2e-09 37.4 48.7 8 10 0.0078 9.3 6.5 4.8 6 36 456 493 455 496 0.88 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF613-201 - 617 2e-09 37.4 48.7 9 10 0.0031 3.8 7.7 4.1 6 35 484 520 483 524 0.86 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF613-201 - 617 2e-09 37.4 48.7 10 10 0.022 26 5.0 0.2 6 18 512 524 511 528 0.89 Zinc ribbon domain zf-C2H2_6 PF13912.6 27 ZNF613-201 - 617 1.5e-07 31.2 81.7 1 12 0.0035 4.2 7.5 0.5 2 11 204 213 204 215 0.95 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF613-201 - 617 1.5e-07 31.2 81.7 2 12 2.9e-05 0.034 14.1 1.7 2 24 232 254 232 257 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF613-201 - 617 1.5e-07 31.2 81.7 3 12 0.00058 0.69 10.0 0.3 2 12 260 270 260 283 0.79 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF613-201 - 617 1.5e-07 31.2 81.7 4 12 0.085 1e+02 3.1 0.2 2 11 288 297 287 301 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF613-201 - 617 1.5e-07 31.2 81.7 5 12 0.00073 0.88 9.7 2.6 2 24 316 338 316 341 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF613-201 - 617 1.5e-07 31.2 81.7 6 12 0.00015 0.18 11.8 0.6 2 24 344 366 344 369 0.89 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF613-201 - 617 1.5e-07 31.2 81.7 7 12 1.1 1.3e+03 -0.4 0.2 2 11 372 381 371 381 0.91 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF613-201 - 617 1.5e-07 31.2 81.7 8 12 0.0036 4.3 7.4 0.1 2 11 400 409 400 425 0.74 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF613-201 - 617 1.5e-07 31.2 81.7 9 12 0.011 13 5.9 2.5 2 13 428 439 428 451 0.78 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF613-201 - 617 1.5e-07 31.2 81.7 10 12 0.022 26 4.9 0.5 2 10 456 464 456 464 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF613-201 - 617 1.5e-07 31.2 81.7 11 12 0.028 34 4.6 1.9 2 24 484 506 484 509 0.89 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF613-201 - 617 1.5e-07 31.2 81.7 12 12 0.26 3.1e+02 1.5 1.8 2 12 512 522 512 531 0.88 C2H2-type zinc finger # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF613-201.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF613-201.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF613-201.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF613-201.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF613-201.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:10:52 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZNF613-202 - 581 7.2e-86 279.1 73.4 1 12 1.1e-05 0.014 15.8 0.5 4 25 157 178 155 179 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF613-202 - 581 7.2e-86 279.1 73.4 2 12 5.9e-10 7.1e-07 29.4 0.4 2 25 183 206 182 207 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF613-202 - 581 7.2e-86 279.1 73.4 3 12 4.9e-12 5.9e-09 36.0 0.5 1 24 210 233 210 234 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF613-202 - 581 7.2e-86 279.1 73.4 4 12 1e-07 0.00012 22.3 0.1 2 24 239 261 238 263 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF613-202 - 581 7.2e-86 279.1 73.4 5 12 6.1e-10 7.3e-07 29.3 0.5 2 25 267 290 266 291 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF613-202 - 581 7.2e-86 279.1 73.4 6 12 1e-11 1.2e-08 35.0 1.1 2 24 295 317 294 318 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF613-202 - 581 7.2e-86 279.1 73.4 7 12 7.4e-06 0.0089 16.4 0.1 2 24 323 345 322 347 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF613-202 - 581 7.2e-86 279.1 73.4 8 12 2.4e-08 2.9e-05 24.3 0.0 1 24 350 373 350 375 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF613-202 - 581 7.2e-86 279.1 73.4 9 12 6e-10 7.1e-07 29.4 0.2 2 25 379 402 378 403 0.90 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF613-202 - 581 7.2e-86 279.1 73.4 10 12 4.9e-08 5.8e-05 23.3 3.4 3 26 408 431 407 431 0.90 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF613-202 - 581 7.2e-86 279.1 73.4 11 12 3.7e-11 4.4e-08 33.2 0.1 2 24 435 457 434 458 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF613-202 - 581 7.2e-86 279.1 73.4 12 12 1.1e-10 1.3e-07 31.7 1.1 2 26 463 487 463 487 0.97 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZNF613-202 - 581 7.3e-61 199.4 88.4 1 13 0.14 1.6e+02 3.0 0.0 9 22 148 161 146 161 0.87 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF613-202 - 581 7.3e-61 199.4 88.4 2 13 4.2e-05 0.05 14.1 1.5 1 23 168 190 168 190 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF613-202 - 581 7.3e-61 199.4 88.4 3 13 4.7e-08 5.6e-05 23.4 0.6 3 23 198 218 198 218 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF613-202 - 581 7.3e-61 199.4 88.4 4 13 5.9e-07 0.0007 19.9 0.3 1 23 224 246 224 246 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF613-202 - 581 7.3e-61 199.4 88.4 5 13 1.3e-07 0.00016 22.0 0.3 1 23 252 274 252 274 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF613-202 - 581 7.3e-61 199.4 88.4 6 13 1.5e-06 0.0018 18.6 1.7 3 23 282 302 282 302 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF613-202 - 581 7.3e-61 199.4 88.4 7 13 1.4e-06 0.0016 18.7 0.3 1 23 308 330 308 330 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF613-202 - 581 7.3e-61 199.4 88.4 8 13 1.4e-08 1.7e-05 25.0 0.1 1 23 336 358 336 358 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF613-202 - 581 7.3e-61 199.4 88.4 9 13 4.9e-08 5.9e-05 23.3 0.1 1 23 364 386 364 386 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF613-202 - 581 7.3e-61 199.4 88.4 10 13 2.4e-07 0.00028 21.2 2.3 1 23 392 414 392 414 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF613-202 - 581 7.3e-61 199.4 88.4 11 13 7.2e-08 8.6e-05 22.8 2.8 1 23 420 442 420 442 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF613-202 - 581 7.3e-61 199.4 88.4 12 13 3.5e-09 4.2e-06 26.9 4.3 1 23 448 470 448 470 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF613-202 - 581 7.3e-61 199.4 88.4 13 13 6.8e-05 0.082 13.4 2.3 3 23 478 499 476 499 0.90 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZNF613-202 - 581 5.8e-31 104.5 87.9 1 14 7.7 9.2e+03 -1.9 0.0 14 23 45 54 38 55 0.73 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF613-202 - 581 5.8e-31 104.5 87.9 2 14 6.9 8.2e+03 -1.8 0.0 10 22 149 161 146 162 0.79 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF613-202 - 581 5.8e-31 104.5 87.9 3 14 0.00027 0.32 11.9 1.4 1 23 168 190 168 191 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF613-202 - 581 5.8e-31 104.5 87.9 4 14 9.8e-06 0.012 16.4 0.8 3 23 198 218 196 219 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF613-202 - 581 5.8e-31 104.5 87.9 5 14 0.0004 0.48 11.4 0.4 1 23 224 246 224 247 0.88 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF613-202 - 581 5.8e-31 104.5 87.9 6 14 3.1e-05 0.037 14.9 0.2 1 23 252 274 252 275 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF613-202 - 581 5.8e-31 104.5 87.9 7 14 0.00011 0.13 13.2 1.9 3 23 282 302 280 303 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF613-202 - 581 5.8e-31 104.5 87.9 8 14 0.00014 0.17 12.8 0.4 1 23 308 330 308 331 0.89 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF613-202 - 581 5.8e-31 104.5 87.9 9 14 0.00011 0.13 13.2 0.0 1 23 336 358 336 359 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF613-202 - 581 5.8e-31 104.5 87.9 10 14 2.7e-05 0.033 15.0 0.1 1 23 364 386 364 387 0.97 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF613-202 - 581 5.8e-31 104.5 87.9 11 14 9.6e-05 0.11 13.3 2.1 1 23 392 414 392 415 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF613-202 - 581 5.8e-31 104.5 87.9 12 14 0.00018 0.22 12.5 2.5 1 23 420 442 420 443 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF613-202 - 581 5.8e-31 104.5 87.9 13 14 2.5e-06 0.0029 18.3 2.7 1 23 448 470 448 471 0.97 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF613-202 - 581 5.8e-31 104.5 87.9 14 14 0.031 37 5.5 2.4 2 23 477 498 476 499 0.83 C2H2-type zinc finger Zn-ribbon_8 PF09723.10 40 ZNF613-202 - 581 6.9e-10 38.9 48.1 1 10 0.0012 1.4 9.1 0.5 7 38 169 207 167 209 0.88 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF613-202 - 581 6.9e-10 38.9 48.1 2 10 5.5e-05 0.066 13.3 1.3 6 34 224 259 223 265 0.92 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF613-202 - 581 6.9e-10 38.9 48.1 3 10 0.00058 0.69 10.1 0.6 6 38 252 291 251 293 0.88 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF613-202 - 581 6.9e-10 38.9 48.1 4 10 0.051 60 3.9 4.0 8 34 282 315 272 318 0.78 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF613-202 - 581 6.9e-10 38.9 48.1 5 10 0.00026 0.31 11.2 2.4 6 34 308 343 306 348 0.91 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF613-202 - 581 6.9e-10 38.9 48.1 6 10 1.6e-05 0.019 15.1 0.1 6 34 336 371 334 376 0.92 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF613-202 - 581 6.9e-10 38.9 48.1 7 10 0.0015 1.8 8.7 5.0 6 35 392 428 391 433 0.88 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF613-202 - 581 6.9e-10 38.9 48.1 8 10 0.0067 8 6.7 4.7 6 36 420 457 418 460 0.88 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF613-202 - 581 6.9e-10 38.9 48.1 9 10 0.0029 3.4 7.9 4.1 6 35 448 484 447 488 0.86 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF613-202 - 581 6.9e-10 38.9 48.1 10 10 0.02 24 5.1 0.2 6 18 476 488 475 492 0.89 Zinc ribbon domain zf-C2H2_6 PF13912.6 27 ZNF613-202 - 581 5e-08 32.8 81.3 1 12 0.0033 3.9 7.6 0.5 2 11 168 177 168 179 0.95 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF613-202 - 581 5e-08 32.8 81.3 2 12 2.7e-05 0.032 14.2 1.7 2 24 196 218 196 221 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF613-202 - 581 5e-08 32.8 81.3 3 12 0.00054 0.64 10.1 0.3 2 12 224 234 224 247 0.79 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF613-202 - 581 5e-08 32.8 81.3 4 12 0.079 95 3.2 0.2 2 11 252 261 251 265 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF613-202 - 581 5e-08 32.8 81.3 5 12 0.00068 0.82 9.7 2.6 2 24 280 302 280 305 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF613-202 - 581 5e-08 32.8 81.3 6 12 0.00014 0.17 11.9 0.6 2 24 308 330 308 333 0.89 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF613-202 - 581 5e-08 32.8 81.3 7 12 0.99 1.2e+03 -0.3 0.2 2 11 336 345 335 345 0.91 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF613-202 - 581 5e-08 32.8 81.3 8 12 0.0034 4 7.5 0.1 2 11 364 373 364 389 0.74 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF613-202 - 581 5e-08 32.8 81.3 9 12 0.008 9.5 6.3 2.2 2 13 392 403 392 416 0.78 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF613-202 - 581 5e-08 32.8 81.3 10 12 0.021 25 5.0 0.5 2 10 420 428 420 428 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF613-202 - 581 5e-08 32.8 81.3 11 12 0.026 31 4.7 1.9 2 24 448 470 448 473 0.89 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF613-202 - 581 5e-08 32.8 81.3 12 12 0.24 2.9e+02 1.6 1.8 2 12 476 486 476 495 0.88 C2H2-type zinc finger # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF613-202.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF613-202.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF613-202.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF613-202.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF613-202.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:10:52 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF613-203.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF613-203.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF613-203.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF613-203.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF613-203.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:10:53 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF613-204.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF613-204.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF613-204.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF613-204.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF613-204.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:10:53 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF613-205.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF613-205.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF613-205.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF613-205.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF613-205.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:10:53 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF613-206.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF613-206.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF613-206.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF613-206.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF613-206.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:10:54 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF613-207.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF613-207.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF613-207.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF613-207.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF613-207.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:10:54 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZNF614-201 - 585 4.2e-73 238.7 78.9 1 13 1.1 9.1e+02 0.6 1.5 4 13 169 178 169 187 0.73 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF614-201 - 585 4.2e-73 238.7 78.9 2 13 8.8e-05 0.075 13.5 1.1 4 25 194 215 193 216 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF614-201 - 585 4.2e-73 238.7 78.9 3 13 1.2e-06 0.00098 19.4 0.3 2 25 274 297 273 297 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF614-201 - 585 4.2e-73 238.7 78.9 4 13 1.9e-09 1.6e-06 28.3 0.5 2 25 302 325 301 325 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF614-201 - 585 4.2e-73 238.7 78.9 5 13 4.4e-09 3.7e-06 27.1 0.1 1 25 329 353 329 353 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF614-201 - 585 4.2e-73 238.7 78.9 6 13 3.1e-10 2.6e-07 30.8 0.4 2 25 358 381 357 381 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF614-201 - 585 4.2e-73 238.7 78.9 7 13 9.8e-08 8.4e-05 22.8 0.1 1 25 385 409 385 409 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF614-201 - 585 4.2e-73 238.7 78.9 8 13 1.9e-07 0.00016 21.9 0.2 2 26 414 438 413 438 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF614-201 - 585 4.2e-73 238.7 78.9 9 13 5.4e-11 4.6e-08 33.1 0.2 5 25 445 465 442 466 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF614-201 - 585 4.2e-73 238.7 78.9 10 13 4.5e-08 3.8e-05 23.9 3.5 3 26 471 494 470 494 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF614-201 - 585 4.2e-73 238.7 78.9 11 13 1.3e-11 1.1e-08 35.1 0.2 2 26 498 522 497 522 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF614-201 - 585 4.2e-73 238.7 78.9 12 13 4e-09 3.4e-06 27.2 0.7 2 26 526 550 526 550 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF614-201 - 585 4.2e-73 238.7 78.9 13 13 0.051 44 4.8 0.2 1 12 553 564 553 571 0.92 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZNF614-201 - 585 1e-55 183.2 83.8 1 14 8.3 7e+03 -2.1 0.1 12 22 188 198 184 198 0.75 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF614-201 - 585 1e-55 183.2 83.8 2 14 0.23 1.9e+02 2.8 0.1 3 20 207 224 205 226 0.85 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF614-201 - 585 1e-55 183.2 83.8 3 14 2.5 2.1e+03 -0.5 0.1 11 22 241 252 237 252 0.84 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF614-201 - 585 1e-55 183.2 83.8 4 14 0.16 1.4e+02 3.2 0.1 12 23 270 281 266 281 0.87 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF614-201 - 585 1e-55 183.2 83.8 5 14 2.2e-07 0.00019 21.7 0.8 1 23 287 309 287 309 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF614-201 - 585 1e-55 183.2 83.8 6 14 1.4e-09 1.2e-06 28.6 0.3 1 23 315 337 315 337 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF614-201 - 585 1e-55 183.2 83.8 7 14 1.4e-07 0.00012 22.3 0.6 1 23 343 365 343 365 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF614-201 - 585 1e-55 183.2 83.8 8 14 1.3e-08 1.1e-05 25.5 0.3 1 23 371 393 371 393 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF614-201 - 585 1e-55 183.2 83.8 9 14 3e-07 0.00026 21.3 0.3 1 23 399 421 399 421 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF614-201 - 585 1e-55 183.2 83.8 10 14 2.6e-08 2.2e-05 24.6 0.5 1 23 427 449 427 449 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF614-201 - 585 1e-55 183.2 83.8 11 14 4e-05 0.034 14.6 2.8 1 21 455 475 455 477 0.94 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF614-201 - 585 1e-55 183.2 83.8 12 14 3.1e-08 2.7e-05 24.4 1.5 1 23 483 505 483 505 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF614-201 - 585 1e-55 183.2 83.8 13 14 2.8e-09 2.4e-06 27.7 0.4 1 23 511 533 511 533 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF614-201 - 585 1e-55 183.2 83.8 14 14 6.8e-07 0.00058 20.2 1.9 3 23 541 561 539 561 0.97 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZNF614-201 - 585 1.3e-29 100.3 86.0 1 12 0.0062 5.3 8.2 0.8 1 20 205 224 205 227 0.91 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF614-201 - 585 1.3e-29 100.3 86.0 2 12 3.4 2.9e+03 -0.4 0.1 13 23 271 281 266 282 0.81 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF614-201 - 585 1.3e-29 100.3 86.0 3 12 2.2e-05 0.019 15.8 0.5 1 23 287 309 287 310 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF614-201 - 585 1.3e-29 100.3 86.0 4 12 1e-05 0.0088 16.8 0.3 1 23 315 337 315 338 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF614-201 - 585 1.3e-29 100.3 86.0 5 12 2.5e-05 0.022 15.6 0.5 1 23 343 365 343 366 0.91 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF614-201 - 585 1.3e-29 100.3 86.0 6 12 2.2e-05 0.018 15.8 0.4 1 23 371 393 371 394 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF614-201 - 585 1.3e-29 100.3 86.0 7 12 2.7e-05 0.023 15.5 0.3 1 23 399 421 399 422 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF614-201 - 585 1.3e-29 100.3 86.0 8 12 3.5e-06 0.003 18.3 0.2 1 23 427 449 427 450 0.97 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF614-201 - 585 1.3e-29 100.3 86.0 9 12 0.008 6.9 7.8 3.1 1 21 455 475 455 477 0.90 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF614-201 - 585 1.3e-29 100.3 86.0 10 12 2.5e-05 0.021 15.6 1.1 1 23 483 505 483 506 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF614-201 - 585 1.3e-29 100.3 86.0 11 12 5.9e-06 0.005 17.6 0.4 1 23 511 533 511 534 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF614-201 - 585 1.3e-29 100.3 86.0 12 12 0.00096 0.82 10.7 1.7 2 23 540 561 539 562 0.92 C2H2-type zinc finger KRAB PF01352.27 42 ZNF614-201 - 585 1.2e-23 82.4 1.4 1 1 2.8e-26 2.4e-23 81.5 1.4 1 42 7 48 7 48 0.98 KRAB box zf-C2H2_6 PF13912.6 27 ZNF614-201 - 585 1.8e-16 59.6 75.2 1 11 7.7 6.5e+03 -2.7 0.5 2 11 205 214 205 214 0.88 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF614-201 - 585 1.8e-16 59.6 75.2 2 11 0.00042 0.36 10.9 0.8 2 25 287 310 286 312 0.91 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF614-201 - 585 1.8e-16 59.6 75.2 3 11 0.00057 0.49 10.5 0.4 2 24 315 337 315 340 0.89 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF614-201 - 585 1.8e-16 59.6 75.2 4 11 0.0015 1.3 9.1 0.3 2 13 343 354 343 366 0.87 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF614-201 - 585 1.8e-16 59.6 75.2 5 11 0.0021 1.8 8.7 0.4 2 24 371 393 371 396 0.88 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF614-201 - 585 1.8e-16 59.6 75.2 6 11 0.0021 1.8 8.7 0.3 2 11 399 408 398 409 0.91 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF614-201 - 585 1.8e-16 59.6 75.2 7 11 0.00019 0.16 12.0 0.2 2 24 427 449 426 452 0.88 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF614-201 - 585 1.8e-16 59.6 75.2 8 11 0.0053 4.6 7.4 3.5 2 13 455 466 455 479 0.75 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF614-201 - 585 1.8e-16 59.6 75.2 9 11 7.7e-05 0.065 13.2 1.4 2 24 483 505 483 508 0.91 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF614-201 - 585 1.8e-16 59.6 75.2 10 11 6.3e-06 0.0054 16.7 0.5 2 24 511 533 511 536 0.95 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF614-201 - 585 1.8e-16 59.6 75.2 11 11 0.00051 0.44 10.6 2.5 2 25 539 562 539 564 0.92 C2H2-type zinc finger Zn-ribbon_8 PF09723.10 40 ZNF614-201 - 585 3e-10 40.0 50.1 1 11 0.85 7.2e+02 0.4 0.6 19 35 196 213 184 218 0.60 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF614-201 - 585 3e-10 40.0 50.1 2 11 3.8e-05 0.032 14.3 1.8 6 34 287 322 285 328 0.88 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF614-201 - 585 3e-10 40.0 50.1 3 11 4.8e-06 0.0041 17.2 0.9 6 35 315 353 313 358 0.88 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF614-201 - 585 3e-10 40.0 50.1 4 11 3.6e-05 0.031 14.4 1.2 6 34 343 378 342 384 0.89 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF614-201 - 585 3e-10 40.0 50.1 5 11 1.3e-05 0.011 15.8 0.8 6 38 371 412 370 414 0.89 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF614-201 - 585 3e-10 40.0 50.1 6 11 3.4e-05 0.029 14.5 0.9 6 36 399 438 398 442 0.82 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF614-201 - 585 3e-10 40.0 50.1 7 11 3.6e-05 0.031 14.4 2.9 6 38 427 466 424 468 0.86 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF614-201 - 585 3e-10 40.0 50.1 8 11 0.066 56 4.0 8.6 6 34 455 490 454 495 0.70 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF614-201 - 585 3e-10 40.0 50.1 9 11 0.00055 0.47 10.6 3.6 6 35 483 519 482 525 0.88 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF614-201 - 585 3e-10 40.0 50.1 10 11 0.00033 0.28 11.3 3.5 6 34 511 546 510 551 0.92 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF614-201 - 585 3e-10 40.0 50.1 11 11 0.13 1.1e+02 3.0 0.2 6 19 539 552 537 559 0.86 Zinc ribbon domain zf-C2H2_jaz PF12171.8 27 ZNF614-201 - 585 1.8e-09 37.7 46.7 1 11 0.12 1e+02 3.4 0.4 2 22 205 225 204 225 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF614-201 - 585 1.8e-09 37.7 46.7 2 11 0.0036 3 8.2 0.2 2 24 287 309 286 310 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF614-201 - 585 1.8e-09 37.7 46.7 3 11 0.027 23 5.4 0.1 2 23 315 336 314 337 0.86 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF614-201 - 585 1.8e-09 37.7 46.7 4 11 0.0064 5.5 7.4 0.0 2 24 343 365 342 365 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF614-201 - 585 1.8e-09 37.7 46.7 5 11 0.017 14 6.1 0.1 2 24 371 393 370 393 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF614-201 - 585 1.8e-09 37.7 46.7 6 11 0.046 39 4.7 0.1 2 23 399 420 398 421 0.87 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF614-201 - 585 1.8e-09 37.7 46.7 7 11 0.0018 1.5 9.2 0.1 2 24 427 449 426 449 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF614-201 - 585 1.8e-09 37.7 46.7 8 11 0.84 7.1e+02 0.7 0.8 2 12 455 465 454 475 0.81 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF614-201 - 585 1.8e-09 37.7 46.7 9 11 0.039 33 4.9 0.1 2 21 483 502 482 503 0.88 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF614-201 - 585 1.8e-09 37.7 46.7 10 11 0.00065 0.55 10.6 0.1 2 24 511 533 510 533 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF614-201 - 585 1.8e-09 37.7 46.7 11 11 0.094 80 3.7 0.8 4 22 541 559 539 559 0.94 Zinc-finger double-stranded RNA-binding zinc_ribbon_9 PF14369.6 35 ZNF614-201 - 585 4.4e-08 33.2 26.3 1 11 0.15 1.2e+02 3.0 0.0 22 32 204 215 194 217 0.76 zinc-ribbon zinc_ribbon_9 PF14369.6 35 ZNF614-201 - 585 4.4e-08 33.2 26.3 2 11 0.014 12 6.3 0.0 18 31 281 296 275 298 0.71 zinc-ribbon zinc_ribbon_9 PF14369.6 35 ZNF614-201 - 585 4.4e-08 33.2 26.3 3 11 0.059 50 4.3 0.0 19 31 313 324 303 326 0.70 zinc-ribbon zinc_ribbon_9 PF14369.6 35 ZNF614-201 - 585 4.4e-08 33.2 26.3 4 11 0.023 19 5.6 0.0 17 31 337 352 330 354 0.69 zinc-ribbon zinc_ribbon_9 PF14369.6 35 ZNF614-201 - 585 4.4e-08 33.2 26.3 5 11 0.02 17 5.8 0.0 15 31 363 380 358 382 0.71 zinc-ribbon zinc_ribbon_9 PF14369.6 35 ZNF614-201 - 585 4.4e-08 33.2 26.3 6 11 0.02 17 5.8 0.0 20 31 396 408 386 410 0.68 zinc-ribbon zinc_ribbon_9 PF14369.6 35 ZNF614-201 - 585 4.4e-08 33.2 26.3 7 11 0.0049 4.2 7.7 0.0 18 31 424 436 412 439 0.69 zinc-ribbon zinc_ribbon_9 PF14369.6 35 ZNF614-201 - 585 4.4e-08 33.2 26.3 8 11 0.31 2.7e+02 1.9 0.0 22 31 456 464 442 468 0.74 zinc-ribbon zinc_ribbon_9 PF14369.6 35 ZNF614-201 - 585 4.4e-08 33.2 26.3 9 11 6.5 5.5e+03 -2.3 0.5 20 28 482 489 475 491 0.70 zinc-ribbon zinc_ribbon_9 PF14369.6 35 ZNF614-201 - 585 4.4e-08 33.2 26.3 10 11 0.23 2e+02 2.3 0.1 18 31 508 520 501 522 0.72 zinc-ribbon zinc_ribbon_9 PF14369.6 35 ZNF614-201 - 585 4.4e-08 33.2 26.3 11 11 6.1 5.2e+03 -2.2 0.1 23 31 540 548 527 548 0.65 zinc-ribbon XPA_N PF01286.18 32 ZNF614-201 - 585 7.2e-07 29.1 35.8 1 11 0.04 34 4.6 0.1 3 12 206 215 204 222 0.85 XPA protein N-terminal XPA_N PF01286.18 32 ZNF614-201 - 585 7.2e-07 29.1 35.8 2 11 0.051 44 4.2 0.1 4 12 289 297 287 303 0.86 XPA protein N-terminal XPA_N PF01286.18 32 ZNF614-201 - 585 7.2e-07 29.1 35.8 3 11 0.023 19 5.4 0.1 3 12 316 325 314 327 0.88 XPA protein N-terminal XPA_N PF01286.18 32 ZNF614-201 - 585 7.2e-07 29.1 35.8 4 11 0.04 34 4.6 0.0 3 12 344 353 342 359 0.85 XPA protein N-terminal XPA_N PF01286.18 32 ZNF614-201 - 585 7.2e-07 29.1 35.8 5 11 0.056 48 4.1 0.1 3 12 372 381 370 383 0.88 XPA protein N-terminal XPA_N PF01286.18 32 ZNF614-201 - 585 7.2e-07 29.1 35.8 6 11 0.061 52 4.0 0.1 3 12 400 409 399 410 0.88 XPA protein N-terminal XPA_N PF01286.18 32 ZNF614-201 - 585 7.2e-07 29.1 35.8 7 11 0.039 33 4.6 0.1 3 12 428 437 427 439 0.88 XPA protein N-terminal XPA_N PF01286.18 32 ZNF614-201 - 585 7.2e-07 29.1 35.8 8 11 0.018 15 5.7 0.3 3 12 456 465 454 466 0.88 XPA protein N-terminal XPA_N PF01286.18 32 ZNF614-201 - 585 7.2e-07 29.1 35.8 9 11 0.43 3.7e+02 1.3 0.1 3 10 484 491 483 496 0.85 XPA protein N-terminal XPA_N PF01286.18 32 ZNF614-201 - 585 7.2e-07 29.1 35.8 10 11 0.012 9.8 6.3 0.1 3 12 512 521 510 526 0.88 XPA protein N-terminal XPA_N PF01286.18 32 ZNF614-201 - 585 7.2e-07 29.1 35.8 11 11 0.39 3.4e+02 1.4 0.1 4 12 541 549 539 556 0.90 XPA protein N-terminal # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF614-201.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF614-201.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF614-201.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF614-201.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF614-201.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:10:55 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- KRAB PF01352.27 42 ZNF614-202 - 198 2.5e-24 84.7 1.4 1 1 2.8e-28 5.1e-24 83.7 1.4 1 42 7 48 7 48 0.98 KRAB box # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF614-202.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF614-202.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF614-202.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF614-202.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF614-202.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:10:55 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- KRAB PF01352.27 42 ZNF614-203 - 80 5.9e-25 86.6 1.4 1 1 4.3e-29 7.7e-25 86.3 1.4 1 42 7 48 7 48 0.98 KRAB box # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF614-203.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF614-203.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF614-203.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF614-203.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF614-203.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:10:55 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF614-204.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF614-204.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF614-204.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF614-204.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF614-204.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:10:56 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZNF615-201 - 731 4.7e-128 412.5 125.1 1 20 0.00013 0.13 12.8 0.1 7 25 196 214 195 215 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF615-201 - 731 4.7e-128 412.5 125.1 2 20 1.3e-09 1.3e-06 28.6 0.7 5 25 222 242 219 243 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF615-201 - 731 4.7e-128 412.5 125.1 3 20 1.8e-07 0.00018 21.8 2.6 2 25 247 270 246 271 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF615-201 - 731 4.7e-128 412.5 125.1 4 20 7.3e-09 7.3e-06 26.2 0.2 2 24 275 297 274 299 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF615-201 - 731 4.7e-128 412.5 125.1 5 20 3.9e-10 3.9e-07 30.2 0.8 2 26 303 327 302 327 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF615-201 - 731 4.7e-128 412.5 125.1 6 20 7.1e-09 7e-06 26.2 0.3 1 24 330 353 330 354 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF615-201 - 731 4.7e-128 412.5 125.1 7 20 1.4e-07 0.00014 22.1 1.9 2 25 359 382 358 382 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF615-201 - 731 4.7e-128 412.5 125.1 8 20 8.2e-09 8.2e-06 26.0 0.2 2 25 387 410 386 410 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF615-201 - 731 4.7e-128 412.5 125.1 9 20 1.8e-10 1.7e-07 31.3 0.4 2 25 415 438 415 438 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF615-201 - 731 4.7e-128 412.5 125.1 10 20 1.3e-10 1.2e-07 31.8 1.0 2 25 443 466 443 466 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF615-201 - 731 4.7e-128 412.5 125.1 11 20 1.3e-06 0.0013 19.0 0.1 2 25 471 494 470 494 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF615-201 - 731 4.7e-128 412.5 125.1 12 20 8e-09 8e-06 26.1 0.2 4 24 501 521 498 522 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF615-201 - 731 4.7e-128 412.5 125.1 13 20 2.1e-08 2e-05 24.8 0.2 2 25 527 550 526 551 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF615-201 - 731 4.7e-128 412.5 125.1 14 20 1.1e-09 1.1e-06 28.8 1.0 1 22 554 575 554 578 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF615-201 - 731 4.7e-128 412.5 125.1 15 20 1.8e-08 1.8e-05 24.9 0.1 2 25 583 606 582 606 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF615-201 - 731 4.7e-128 412.5 125.1 16 20 5.7e-10 5.6e-07 29.7 1.4 2 25 611 634 610 635 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF615-201 - 731 4.7e-128 412.5 125.1 17 20 5.2e-07 0.00052 20.3 0.3 3 23 640 660 639 663 0.90 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF615-201 - 731 4.7e-128 412.5 125.1 18 20 1.2e-11 1.2e-08 35.0 0.2 2 26 667 691 666 691 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF615-201 - 731 4.7e-128 412.5 125.1 19 20 3.3e-10 3.3e-07 30.4 0.3 1 26 694 719 694 719 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF615-201 - 731 4.7e-128 412.5 125.1 20 20 6.6 6.6e+03 -2.1 1.6 2 10 723 731 723 731 0.89 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZNF615-201 - 731 3.7e-90 291.6 144.1 1 19 4.4e-05 0.044 14.3 0.7 1 23 204 226 204 226 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF615-201 - 731 3.7e-90 291.6 144.1 2 19 5.5e-08 5.5e-05 23.4 2.9 1 23 232 254 232 254 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF615-201 - 731 3.7e-90 291.6 144.1 3 19 1.3e-06 0.0013 19.1 1.3 1 23 260 282 260 282 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF615-201 - 731 3.7e-90 291.6 144.1 4 19 1.3e-05 0.013 15.9 3.6 1 23 288 310 288 310 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF615-201 - 731 3.7e-90 291.6 144.1 5 19 2.7e-07 0.00027 21.2 1.6 3 23 318 338 318 338 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF615-201 - 731 3.7e-90 291.6 144.1 6 19 1.1e-05 0.011 16.2 1.2 1 23 344 366 344 366 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF615-201 - 731 3.7e-90 291.6 144.1 7 19 2.1e-06 0.0021 18.4 0.6 1 23 372 394 372 394 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF615-201 - 731 3.7e-90 291.6 144.1 8 19 7.4e-07 0.00074 19.8 4.9 1 23 400 422 400 422 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF615-201 - 731 3.7e-90 291.6 144.1 9 19 1.1e-07 0.00011 22.4 0.4 1 23 428 450 428 450 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF615-201 - 731 3.7e-90 291.6 144.1 10 19 5.1e-08 5.1e-05 23.5 0.7 1 23 456 478 456 478 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF615-201 - 731 3.7e-90 291.6 144.1 11 19 3.6e-08 3.6e-05 24.0 0.3 1 23 484 506 484 506 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF615-201 - 731 3.7e-90 291.6 144.1 12 19 1.9e-06 0.0018 18.6 0.1 1 23 512 534 512 534 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF615-201 - 731 3.7e-90 291.6 144.1 13 19 1.7e-08 1.7e-05 25.0 1.6 1 23 540 562 540 562 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF615-201 - 731 3.7e-90 291.6 144.1 14 19 2.2e-07 0.00022 21.5 0.1 1 23 568 590 568 590 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF615-201 - 731 3.7e-90 291.6 144.1 15 19 2.8e-07 0.00028 21.2 0.4 1 23 596 618 596 618 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF615-201 - 731 3.7e-90 291.6 144.1 16 19 3.5e-06 0.0034 17.7 5.6 1 23 624 646 624 646 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF615-201 - 731 3.7e-90 291.6 144.1 17 19 0.0003 0.3 11.6 0.4 1 23 652 674 652 674 0.95 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF615-201 - 731 3.7e-90 291.6 144.1 18 19 3e-10 3e-07 30.5 0.9 1 23 680 702 680 702 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF615-201 - 731 3.7e-90 291.6 144.1 19 19 1.1e-05 0.011 16.2 0.5 3 23 710 730 708 730 0.97 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZNF615-201 - 731 3.9e-57 185.9 137.1 1 20 9.7 9.6e+03 -2.0 0.0 14 22 86 94 76 95 0.68 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF615-201 - 731 3.9e-57 185.9 137.1 2 20 0.00093 0.92 10.5 1.0 1 23 204 226 204 227 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF615-201 - 731 3.9e-57 185.9 137.1 3 20 8.2e-06 0.0082 16.9 2.1 1 23 232 254 232 255 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF615-201 - 731 3.9e-57 185.9 137.1 4 20 9.5e-06 0.0094 16.7 0.9 1 23 260 282 260 283 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF615-201 - 731 3.9e-57 185.9 137.1 5 20 8.6e-05 0.086 13.7 2.7 1 23 288 310 288 311 0.97 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF615-201 - 731 3.9e-57 185.9 137.1 6 20 5.9e-06 0.0059 17.3 2.1 3 23 318 338 316 339 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF615-201 - 731 3.9e-57 185.9 137.1 7 20 5e-05 0.05 14.5 0.8 1 23 344 366 344 367 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF615-201 - 731 3.9e-57 185.9 137.1 8 20 2.4e-05 0.024 15.4 0.4 1 23 372 394 372 395 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF615-201 - 731 3.9e-57 185.9 137.1 9 20 0.00013 0.13 13.2 4.0 1 23 400 422 400 423 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF615-201 - 731 3.9e-57 185.9 137.1 10 20 5.3e-06 0.0053 17.5 0.3 1 23 428 450 428 451 0.97 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF615-201 - 731 3.9e-57 185.9 137.1 11 20 2.8e-05 0.028 15.2 0.5 1 23 456 478 456 479 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF615-201 - 731 3.9e-57 185.9 137.1 12 20 2.2e-05 0.022 15.6 0.2 1 23 484 506 484 507 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF615-201 - 731 3.9e-57 185.9 137.1 13 20 0.00052 0.52 11.3 0.1 1 23 512 534 512 535 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF615-201 - 731 3.9e-57 185.9 137.1 14 20 4.3e-06 0.0043 17.8 1.0 1 23 540 562 540 563 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF615-201 - 731 3.9e-57 185.9 137.1 15 20 0.00017 0.17 12.8 0.1 1 23 568 590 568 591 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF615-201 - 731 3.9e-57 185.9 137.1 16 20 3.8e-05 0.038 14.8 0.3 1 23 596 618 596 619 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF615-201 - 731 3.9e-57 185.9 137.1 17 20 0.00043 0.42 11.6 4.2 1 23 624 646 624 647 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF615-201 - 731 3.9e-57 185.9 137.1 18 20 0.0012 1.2 10.1 0.3 1 23 652 674 652 675 0.91 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF615-201 - 731 3.9e-57 185.9 137.1 19 20 5.8e-07 0.00058 20.5 0.6 1 23 680 702 680 703 0.97 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF615-201 - 731 3.9e-57 185.9 137.1 20 20 0.0068 6.8 7.8 0.5 2 23 709 730 708 731 0.90 C2H2-type zinc finger KRAB PF01352.27 42 ZNF615-201 - 731 7.5e-24 83.1 0.7 1 1 1.3e-26 1.3e-23 82.3 0.7 1 42 7 48 7 48 0.98 KRAB box zf-C2H2_6 PF13912.6 27 ZNF615-201 - 731 2.9e-22 78.1 127.4 1 19 0.0011 1.1 9.4 0.2 1 11 203 213 203 216 0.91 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF615-201 - 731 2.9e-22 78.1 127.4 2 19 0.0015 1.5 8.9 1.5 2 24 232 254 232 256 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF615-201 - 731 2.9e-22 78.1 127.4 3 19 7.7e-05 0.077 13.0 2.2 1 25 259 283 259 284 0.91 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF615-201 - 731 2.9e-22 78.1 127.4 4 19 0.027 27 4.9 1.5 2 11 288 297 288 311 0.89 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF615-201 - 731 2.9e-22 78.1 127.4 5 19 7.7e-06 0.0077 16.2 3.4 2 24 316 338 316 341 0.95 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF615-201 - 731 2.9e-22 78.1 127.4 6 19 0.0044 4.4 7.4 0.3 2 11 344 353 344 368 0.84 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF615-201 - 731 2.9e-22 78.1 127.4 7 19 0.0011 1.1 9.3 0.6 2 24 372 394 372 397 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF615-201 - 731 2.9e-22 78.1 127.4 8 19 0.0037 3.7 7.7 3.5 2 24 400 422 399 425 0.87 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF615-201 - 731 2.9e-22 78.1 127.4 9 19 0.0038 3.7 7.6 0.2 2 11 428 437 428 451 0.88 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF615-201 - 731 2.9e-22 78.1 127.4 10 19 0.00064 0.64 10.1 0.2 2 25 456 479 456 481 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF615-201 - 731 2.9e-22 78.1 127.4 11 19 0.17 1.6e+02 2.4 0.2 2 12 484 494 484 507 0.86 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF615-201 - 731 2.9e-22 78.1 127.4 12 19 0.0017 1.7 8.7 0.1 2 24 512 534 512 537 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF615-201 - 731 2.9e-22 78.1 127.4 13 19 0.00079 0.78 9.8 1.2 2 24 540 562 540 565 0.92 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF615-201 - 731 2.9e-22 78.1 127.4 14 19 0.021 21 5.3 0.1 2 11 568 577 568 592 0.79 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF615-201 - 731 2.9e-22 78.1 127.4 15 19 0.0036 3.6 7.7 0.1 2 12 596 606 596 607 0.91 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF615-201 - 731 2.9e-22 78.1 127.4 16 19 0.0013 1.3 9.1 3.0 2 20 624 642 624 648 0.80 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF615-201 - 731 2.9e-22 78.1 127.4 17 19 0.15 1.5e+02 2.5 0.2 2 9 652 659 651 660 0.90 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF615-201 - 731 2.9e-22 78.1 127.4 18 19 0.0012 1.2 9.2 1.3 2 24 680 702 680 705 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF615-201 - 731 2.9e-22 78.1 127.4 19 19 0.019 19 5.4 0.5 2 25 708 731 708 731 0.91 C2H2-type zinc finger Zn-ribbon_8 PF09723.10 40 ZNF615-201 - 731 2.2e-16 59.7 83.2 1 14 0.0017 1.7 8.8 1.1 7 38 205 243 203 245 0.74 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF615-201 - 731 2.2e-16 59.7 83.2 2 14 0.0026 2.6 8.2 4.7 6 35 260 296 259 301 0.79 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF615-201 - 731 2.2e-16 59.7 83.2 3 14 0.089 88 3.3 7.3 6 35 288 324 287 358 0.65 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF615-201 - 731 2.2e-16 59.7 83.2 4 14 0.011 11 6.2 1.7 6 34 344 379 343 382 0.79 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF615-201 - 731 2.2e-16 59.7 83.2 5 14 0.0011 1.1 9.5 1.3 6 34 372 407 370 411 0.80 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF615-201 - 731 2.2e-16 59.7 83.2 6 14 0.00029 0.29 11.3 3.9 6 34 400 435 399 442 0.92 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF615-201 - 731 2.2e-16 59.7 83.2 7 14 0.00037 0.37 10.9 2.5 6 34 428 463 427 469 0.89 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF615-201 - 731 2.2e-16 59.7 83.2 8 14 5.6e-05 0.055 13.6 0.7 6 34 456 491 455 499 0.90 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF615-201 - 731 2.2e-16 59.7 83.2 9 14 3.6e-05 0.036 14.2 0.5 6 34 484 519 483 527 0.90 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF615-201 - 731 2.2e-16 59.7 83.2 10 14 0.062 62 3.8 0.1 6 16 512 522 510 534 0.82 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF615-201 - 731 2.2e-16 59.7 83.2 11 14 9.5e-05 0.095 12.8 1.6 6 34 540 575 539 582 0.85 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF615-201 - 731 2.2e-16 59.7 83.2 12 14 0.00061 0.61 10.2 3.9 6 38 596 635 595 636 0.88 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF615-201 - 731 2.2e-16 59.7 83.2 13 14 0.00027 0.27 11.4 4.3 6 38 624 664 622 665 0.89 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF615-201 - 731 2.2e-16 59.7 83.2 14 14 1.5e-05 0.015 15.4 1.2 6 35 680 716 679 720 0.92 Zinc ribbon domain zinc_ribbon_9 PF14369.6 35 ZNF615-201 - 731 4.2e-12 46.1 52.3 1 18 0.062 62 4.0 0.0 20 32 201 214 190 216 0.74 zinc-ribbon zinc_ribbon_9 PF14369.6 35 ZNF615-201 - 731 4.2e-12 46.1 52.3 2 18 1.6 1.6e+03 -0.5 0.1 16 31 227 241 218 241 0.68 zinc-ribbon zinc_ribbon_9 PF14369.6 35 ZNF615-201 - 731 4.2e-12 46.1 52.3 3 18 0.57 5.6e+02 0.9 0.0 24 32 262 270 248 272 0.79 zinc-ribbon zinc_ribbon_9 PF14369.6 35 ZNF615-201 - 731 4.2e-12 46.1 52.3 4 18 0.089 88 3.5 0.0 23 32 289 298 275 300 0.79 zinc-ribbon zinc_ribbon_9 PF14369.6 35 ZNF615-201 - 731 4.2e-12 46.1 52.3 5 18 0.0014 1.4 9.3 0.2 22 33 343 355 330 357 0.75 zinc-ribbon zinc_ribbon_9 PF14369.6 35 ZNF615-201 - 731 4.2e-12 46.1 52.3 6 18 0.014 14 6.0 0.1 17 31 364 381 356 382 0.63 zinc-ribbon zinc_ribbon_9 PF14369.6 35 ZNF615-201 - 731 4.2e-12 46.1 52.3 7 18 0.058 57 4.1 0.1 20 31 396 409 388 409 0.72 zinc-ribbon zinc_ribbon_9 PF14369.6 35 ZNF615-201 - 731 4.2e-12 46.1 52.3 8 18 0.018 18 5.7 0.2 15 31 420 437 414 438 0.67 zinc-ribbon zinc_ribbon_9 PF14369.6 35 ZNF615-201 - 731 4.2e-12 46.1 52.3 9 18 0.049 49 4.3 0.0 18 31 453 465 444 467 0.69 zinc-ribbon zinc_ribbon_9 PF14369.6 35 ZNF615-201 - 731 4.2e-12 46.1 52.3 10 18 0.0052 5.2 7.4 0.0 15 31 476 493 470 495 0.71 zinc-ribbon zinc_ribbon_9 PF14369.6 35 ZNF615-201 - 731 4.2e-12 46.1 52.3 11 18 0.12 1.2e+02 3.0 0.0 20 31 509 521 498 521 0.66 zinc-ribbon zinc_ribbon_9 PF14369.6 35 ZNF615-201 - 731 4.2e-12 46.1 52.3 12 18 0.0018 1.8 8.9 0.1 22 33 539 551 530 552 0.71 zinc-ribbon zinc_ribbon_9 PF14369.6 35 ZNF615-201 - 731 4.2e-12 46.1 52.3 13 18 0.37 3.7e+02 1.5 0.0 12 30 557 576 554 577 0.65 zinc-ribbon zinc_ribbon_9 PF14369.6 35 ZNF615-201 - 731 4.2e-12 46.1 52.3 14 18 0.0092 9.2 6.6 0.0 22 31 595 605 584 607 0.70 zinc-ribbon zinc_ribbon_9 PF14369.6 35 ZNF615-201 - 731 4.2e-12 46.1 52.3 15 18 0.22 2.2e+02 2.2 0.1 22 31 623 633 610 633 0.64 zinc-ribbon zinc_ribbon_9 PF14369.6 35 ZNF615-201 - 731 4.2e-12 46.1 52.3 16 18 5.5 5.5e+03 -2.3 0.0 20 28 651 658 644 659 0.71 zinc-ribbon zinc_ribbon_9 PF14369.6 35 ZNF615-201 - 731 4.2e-12 46.1 52.3 17 18 0.55 5.5e+02 0.9 0.1 17 31 676 689 670 691 0.72 zinc-ribbon zinc_ribbon_9 PF14369.6 35 ZNF615-201 - 731 4.2e-12 46.1 52.3 18 18 2.4 2.4e+03 -1.1 0.1 23 31 709 717 696 719 0.72 zinc-ribbon zf_UBZ PF18439.1 32 ZNF615-201 - 731 2.8e-10 39.6 77.0 1 19 0.0066 6.5 6.4 0.1 3 15 204 216 202 223 0.76 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF615-201 - 731 2.8e-10 39.6 77.0 2 19 0.11 1.1e+02 2.5 0.1 3 15 232 244 230 251 0.79 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF615-201 - 731 2.8e-10 39.6 77.0 3 19 0.0083 8.2 6.1 0.5 2 17 259 275 258 279 0.79 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF615-201 - 731 2.8e-10 39.6 77.0 4 19 0.015 15 5.3 1.3 3 12 288 297 286 302 0.88 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF615-201 - 731 2.8e-10 39.6 77.0 5 19 0.16 1.6e+02 2.0 0.0 5 21 318 335 316 335 0.90 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF615-201 - 731 2.8e-10 39.6 77.0 6 19 0.0061 6 6.5 0.1 3 15 344 356 342 363 0.78 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF615-201 - 731 2.8e-10 39.6 77.0 7 19 0.074 74 3.1 0.0 3 15 372 384 370 391 0.74 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF615-201 - 731 2.8e-10 39.6 77.0 8 19 0.0036 3.6 7.3 0.5 3 14 400 411 398 415 0.87 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF615-201 - 731 2.8e-10 39.6 77.0 9 19 0.08 80 3.0 0.1 3 12 428 437 426 441 0.85 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF615-201 - 731 2.8e-10 39.6 77.0 10 19 0.072 72 3.1 0.1 3 14 456 467 454 475 0.78 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF615-201 - 731 2.8e-10 39.6 77.0 11 19 0.072 71 3.1 0.1 3 13 484 494 482 499 0.82 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF615-201 - 731 2.8e-10 39.6 77.0 12 19 0.0074 7.4 6.3 0.0 3 15 512 524 510 531 0.82 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF615-201 - 731 2.8e-10 39.6 77.0 13 19 0.045 45 3.7 0.1 3 14 540 551 538 556 0.84 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF615-201 - 731 2.8e-10 39.6 77.0 14 19 0.012 12 5.6 0.0 3 11 568 576 566 587 0.85 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF615-201 - 731 2.8e-10 39.6 77.0 15 19 0.053 53 3.5 0.1 3 13 596 606 594 614 0.85 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF615-201 - 731 2.8e-10 39.6 77.0 16 19 0.16 1.6e+02 2.0 1.4 3 13 624 634 622 646 0.79 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF615-201 - 731 2.8e-10 39.6 77.0 17 19 0.024 24 4.6 0.1 2 20 651 670 650 671 0.75 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF615-201 - 731 2.8e-10 39.6 77.0 18 19 0.015 15 5.2 0.1 3 12 680 689 678 696 0.87 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF615-201 - 731 2.8e-10 39.6 77.0 19 19 0.061 61 3.3 0.0 3 13 708 718 707 723 0.83 Ubiquitin-Binding Zinc Finger DUF3268 PF11672.8 118 ZNF615-201 - 731 1.7e-09 38.0 59.6 1 14 3.5 3.5e+03 -1.7 0.0 19 37 191 210 186 230 0.72 zinc-finger-containing domain DUF3268 PF11672.8 118 ZNF615-201 - 731 1.7e-09 38.0 59.6 2 14 0.2 2e+02 2.3 0.3 3 38 204 239 202 257 0.77 zinc-finger-containing domain DUF3268 PF11672.8 118 ZNF615-201 - 731 1.7e-09 38.0 59.6 3 14 0.009 9 6.7 0.8 2 39 231 268 230 284 0.71 zinc-finger-containing domain DUF3268 PF11672.8 118 ZNF615-201 - 731 1.7e-09 38.0 59.6 4 14 0.042 41 4.5 2.5 3 37 260 294 258 309 0.89 zinc-finger-containing domain DUF3268 PF11672.8 118 ZNF615-201 - 731 1.7e-09 38.0 59.6 5 14 0.054 54 4.2 1.9 2 38 287 323 286 328 0.83 zinc-finger-containing domain DUF3268 PF11672.8 118 ZNF615-201 - 731 1.7e-09 38.0 59.6 6 14 0.0049 4.9 7.5 0.6 3 37 316 350 314 360 0.90 zinc-finger-containing domain DUF3268 PF11672.8 118 ZNF615-201 - 731 1.7e-09 38.0 59.6 7 14 0.00093 0.92 9.8 0.9 3 38 372 407 370 422 0.86 zinc-finger-containing domain DUF3268 PF11672.8 118 ZNF615-201 - 731 1.7e-09 38.0 59.6 8 14 0.0068 6.7 7.1 0.3 2 37 427 462 426 478 0.81 zinc-finger-containing domain DUF3268 PF11672.8 118 ZNF615-201 - 731 1.7e-09 38.0 59.6 9 14 0.00086 0.86 10.0 0.2 2 37 483 518 482 532 0.89 zinc-finger-containing domain DUF3268 PF11672.8 118 ZNF615-201 - 731 1.7e-09 38.0 59.6 10 14 0.00069 0.68 10.3 0.4 2 37 539 574 538 589 0.92 zinc-finger-containing domain DUF3268 PF11672.8 118 ZNF615-201 - 731 1.7e-09 38.0 59.6 11 14 0.00015 0.15 12.4 1.3 2 39 595 632 594 640 0.91 zinc-finger-containing domain DUF3268 PF11672.8 118 ZNF615-201 - 731 1.7e-09 38.0 59.6 12 14 2.3 2.3e+03 -1.1 0.1 26 39 647 660 631 672 0.73 zinc-finger-containing domain DUF3268 PF11672.8 118 ZNF615-201 - 731 1.7e-09 38.0 59.6 13 14 0.0089 8.9 6.7 0.4 3 39 652 688 649 695 0.77 zinc-finger-containing domain DUF3268 PF11672.8 118 ZNF615-201 - 731 1.7e-09 38.0 59.6 14 14 0.00097 0.96 9.8 0.9 2 37 679 714 677 721 0.92 zinc-finger-containing domain zf-C2H2_jaz PF12171.8 27 ZNF615-201 - 731 9.3e-07 29.0 91.6 1 19 0.06 60 4.1 0.3 3 22 205 224 203 224 0.91 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF615-201 - 731 9.3e-07 29.0 91.6 2 19 0.01 10 6.5 0.1 2 24 232 254 231 255 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF615-201 - 731 9.3e-07 29.0 91.6 3 19 8.8e-05 0.088 13.1 4.1 2 24 260 282 259 282 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF615-201 - 731 9.3e-07 29.0 91.6 4 19 2 2e+03 -0.7 1.8 2 14 288 300 287 316 0.76 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF615-201 - 731 9.3e-07 29.0 91.6 5 19 0.0015 1.5 9.2 0.4 4 24 318 338 315 338 0.95 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF615-201 - 731 9.3e-07 29.0 91.6 6 19 0.0077 7.6 6.9 0.1 2 20 344 362 343 366 0.88 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF615-201 - 731 9.3e-07 29.0 91.6 7 19 0.69 6.9e+02 0.7 0.2 2 23 372 393 371 394 0.86 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF615-201 - 731 9.3e-07 29.0 91.6 8 19 0.17 1.7e+02 2.7 1.3 2 23 400 421 399 422 0.84 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF615-201 - 731 9.3e-07 29.0 91.6 9 19 0.45 4.5e+02 1.3 0.1 2 12 428 438 427 450 0.84 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF615-201 - 731 9.3e-07 29.0 91.6 10 19 0.0016 1.6 9.1 0.0 2 24 456 478 455 478 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF615-201 - 731 9.3e-07 29.0 91.6 11 19 1.5 1.5e+03 -0.4 0.1 2 22 484 504 483 506 0.72 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF615-201 - 731 9.3e-07 29.0 91.6 12 19 1 1e+03 0.2 0.0 2 22 512 532 511 534 0.72 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF615-201 - 731 9.3e-07 29.0 91.6 13 19 0.014 14 6.1 0.2 2 24 540 562 539 562 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF615-201 - 731 9.3e-07 29.0 91.6 14 19 0.1 1e+02 3.4 0.0 2 24 568 590 567 590 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF615-201 - 731 9.3e-07 29.0 91.6 15 19 0.032 32 5.0 0.1 2 23 596 617 595 618 0.89 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF615-201 - 731 9.3e-07 29.0 91.6 16 19 0.013 13 6.3 2.3 2 21 624 643 623 644 0.81 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF615-201 - 731 9.3e-07 29.0 91.6 17 19 0.15 1.5e+02 2.8 0.1 2 22 652 672 651 672 0.90 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF615-201 - 731 9.3e-07 29.0 91.6 18 19 0.11 1.1e+02 3.2 0.2 2 22 680 700 679 702 0.90 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF615-201 - 731 9.3e-07 29.0 91.6 19 19 4.6 4.5e+03 -1.9 0.1 4 21 710 727 710 728 0.82 Zinc-finger double-stranded RNA-binding # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF615-201.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF615-201.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF615-201.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF615-201.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF615-201.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:10:56 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZNF615-202 - 736 5.5e-128 412.3 125.1 1 20 0.00013 0.13 12.7 0.1 7 25 201 219 200 220 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF615-202 - 736 5.5e-128 412.3 125.1 2 20 1.3e-09 1.3e-06 28.6 0.7 5 25 227 247 224 248 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF615-202 - 736 5.5e-128 412.3 125.1 3 20 1.8e-07 0.00018 21.8 2.6 2 25 252 275 251 276 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF615-202 - 736 5.5e-128 412.3 125.1 4 20 7.4e-09 7.3e-06 26.2 0.2 2 24 280 302 279 304 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF615-202 - 736 5.5e-128 412.3 125.1 5 20 3.9e-10 3.9e-07 30.2 0.8 2 26 308 332 307 332 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF615-202 - 736 5.5e-128 412.3 125.1 6 20 7.1e-09 7.1e-06 26.2 0.3 1 24 335 358 335 359 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF615-202 - 736 5.5e-128 412.3 125.1 7 20 1.4e-07 0.00014 22.1 1.9 2 25 364 387 363 387 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF615-202 - 736 5.5e-128 412.3 125.1 8 20 8.3e-09 8.3e-06 26.0 0.2 2 25 392 415 391 415 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF615-202 - 736 5.5e-128 412.3 125.1 9 20 1.8e-10 1.8e-07 31.3 0.4 2 25 420 443 420 443 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF615-202 - 736 5.5e-128 412.3 125.1 10 20 1.3e-10 1.3e-07 31.8 1.0 2 25 448 471 448 471 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF615-202 - 736 5.5e-128 412.3 125.1 11 20 1.4e-06 0.0014 19.0 0.1 2 25 476 499 475 499 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF615-202 - 736 5.5e-128 412.3 125.1 12 20 8.1e-09 8.1e-06 26.0 0.2 4 24 506 526 503 527 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF615-202 - 736 5.5e-128 412.3 125.1 13 20 2.1e-08 2.1e-05 24.8 0.2 2 25 532 555 531 556 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF615-202 - 736 5.5e-128 412.3 125.1 14 20 1.1e-09 1.1e-06 28.8 1.0 1 22 559 580 559 583 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF615-202 - 736 5.5e-128 412.3 125.1 15 20 1.9e-08 1.8e-05 24.9 0.1 2 25 588 611 587 611 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF615-202 - 736 5.5e-128 412.3 125.1 16 20 5.7e-10 5.7e-07 29.7 1.4 2 25 616 639 615 640 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF615-202 - 736 5.5e-128 412.3 125.1 17 20 5.2e-07 0.00052 20.3 0.3 3 23 645 665 644 668 0.90 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF615-202 - 736 5.5e-128 412.3 125.1 18 20 1.2e-11 1.2e-08 35.0 0.2 2 26 672 696 671 696 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF615-202 - 736 5.5e-128 412.3 125.1 19 20 3.3e-10 3.3e-07 30.4 0.3 1 26 699 724 699 724 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF615-202 - 736 5.5e-128 412.3 125.1 20 20 6.6 6.6e+03 -2.1 1.6 2 10 728 736 728 736 0.89 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZNF615-202 - 736 4.3e-90 291.4 144.1 1 19 4.4e-05 0.044 14.2 0.7 1 23 209 231 209 231 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF615-202 - 736 4.3e-90 291.4 144.1 2 19 5.5e-08 5.5e-05 23.4 2.9 1 23 237 259 237 259 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF615-202 - 736 4.3e-90 291.4 144.1 3 19 1.3e-06 0.0013 19.1 1.3 1 23 265 287 265 287 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF615-202 - 736 4.3e-90 291.4 144.1 4 19 1.3e-05 0.013 15.9 3.6 1 23 293 315 293 315 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF615-202 - 736 4.3e-90 291.4 144.1 5 19 2.7e-07 0.00027 21.2 1.6 3 23 323 343 323 343 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF615-202 - 736 4.3e-90 291.4 144.1 6 19 1.1e-05 0.011 16.2 1.2 1 23 349 371 349 371 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF615-202 - 736 4.3e-90 291.4 144.1 7 19 2.1e-06 0.0021 18.4 0.6 1 23 377 399 377 399 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF615-202 - 736 4.3e-90 291.4 144.1 8 19 7.5e-07 0.00075 19.8 4.9 1 23 405 427 405 427 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF615-202 - 736 4.3e-90 291.4 144.1 9 19 1.1e-07 0.00011 22.4 0.4 1 23 433 455 433 455 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF615-202 - 736 4.3e-90 291.4 144.1 10 19 5.1e-08 5.1e-05 23.5 0.7 1 23 461 483 461 483 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF615-202 - 736 4.3e-90 291.4 144.1 11 19 3.7e-08 3.6e-05 24.0 0.3 1 23 489 511 489 511 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF615-202 - 736 4.3e-90 291.4 144.1 12 19 1.9e-06 0.0019 18.6 0.1 1 23 517 539 517 539 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF615-202 - 736 4.3e-90 291.4 144.1 13 19 1.7e-08 1.7e-05 25.0 1.6 1 23 545 567 545 567 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF615-202 - 736 4.3e-90 291.4 144.1 14 19 2.2e-07 0.00022 21.5 0.1 1 23 573 595 573 595 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF615-202 - 736 4.3e-90 291.4 144.1 15 19 2.8e-07 0.00028 21.2 0.4 1 23 601 623 601 623 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF615-202 - 736 4.3e-90 291.4 144.1 16 19 3.5e-06 0.0035 17.7 5.6 1 23 629 651 629 651 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF615-202 - 736 4.3e-90 291.4 144.1 17 19 0.0003 0.3 11.6 0.4 1 23 657 679 657 679 0.95 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF615-202 - 736 4.3e-90 291.4 144.1 18 19 3e-10 3e-07 30.5 0.9 1 23 685 707 685 707 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF615-202 - 736 4.3e-90 291.4 144.1 19 19 1.1e-05 0.011 16.2 0.5 3 23 715 735 713 735 0.97 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZNF615-202 - 736 4.6e-57 185.7 137.1 1 20 9.7 9.7e+03 -2.0 0.0 14 22 91 99 81 100 0.68 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF615-202 - 736 4.6e-57 185.7 137.1 2 20 0.00093 0.93 10.5 1.0 1 23 209 231 209 232 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF615-202 - 736 4.6e-57 185.7 137.1 3 20 8.3e-06 0.0082 16.9 2.1 1 23 237 259 237 260 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF615-202 - 736 4.6e-57 185.7 137.1 4 20 9.6e-06 0.0095 16.7 0.9 1 23 265 287 265 288 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF615-202 - 736 4.6e-57 185.7 137.1 5 20 8.7e-05 0.087 13.7 2.7 1 23 293 315 293 316 0.97 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF615-202 - 736 4.6e-57 185.7 137.1 6 20 6e-06 0.006 17.3 2.1 3 23 323 343 321 344 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF615-202 - 736 4.6e-57 185.7 137.1 7 20 5e-05 0.05 14.5 0.8 1 23 349 371 349 372 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF615-202 - 736 4.6e-57 185.7 137.1 8 20 2.5e-05 0.024 15.4 0.4 1 23 377 399 377 400 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF615-202 - 736 4.6e-57 185.7 137.1 9 20 0.00013 0.13 13.2 4.0 1 23 405 427 405 428 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF615-202 - 736 4.6e-57 185.7 137.1 10 20 5.4e-06 0.0054 17.5 0.3 1 23 433 455 433 456 0.97 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF615-202 - 736 4.6e-57 185.7 137.1 11 20 2.9e-05 0.028 15.2 0.5 1 23 461 483 461 484 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF615-202 - 736 4.6e-57 185.7 137.1 12 20 2.2e-05 0.022 15.6 0.2 1 23 489 511 489 512 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF615-202 - 736 4.6e-57 185.7 137.1 13 20 0.00052 0.52 11.3 0.1 1 23 517 539 517 540 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF615-202 - 736 4.6e-57 185.7 137.1 14 20 4.3e-06 0.0043 17.8 1.0 1 23 545 567 545 568 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF615-202 - 736 4.6e-57 185.7 137.1 15 20 0.00017 0.17 12.8 0.1 1 23 573 595 573 596 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF615-202 - 736 4.6e-57 185.7 137.1 16 20 3.9e-05 0.038 14.8 0.3 1 23 601 623 601 624 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF615-202 - 736 4.6e-57 185.7 137.1 17 20 0.00043 0.43 11.6 4.2 1 23 629 651 629 652 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF615-202 - 736 4.6e-57 185.7 137.1 18 20 0.0012 1.2 10.1 0.3 1 23 657 679 657 680 0.91 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF615-202 - 736 4.6e-57 185.7 137.1 19 20 5.9e-07 0.00058 20.5 0.6 1 23 685 707 685 708 0.97 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF615-202 - 736 4.6e-57 185.7 137.1 20 20 0.0069 6.9 7.8 0.5 2 23 714 735 713 736 0.90 C2H2-type zinc finger KRAB PF01352.27 42 ZNF615-202 - 736 7.5e-24 83.1 0.7 1 1 1.3e-26 1.3e-23 82.3 0.7 1 42 12 53 12 53 0.98 KRAB box zf-C2H2_6 PF13912.6 27 ZNF615-202 - 736 3.4e-22 77.9 127.4 1 19 0.0011 1.1 9.3 0.2 1 11 208 218 208 221 0.91 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF615-202 - 736 3.4e-22 77.9 127.4 2 19 0.0015 1.5 8.9 1.5 2 24 237 259 237 261 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF615-202 - 736 3.4e-22 77.9 127.4 3 19 7.8e-05 0.078 13.0 2.2 1 25 264 288 264 289 0.91 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF615-202 - 736 3.4e-22 77.9 127.4 4 19 0.027 27 4.9 1.5 2 11 293 302 293 316 0.89 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF615-202 - 736 3.4e-22 77.9 127.4 5 19 7.8e-06 0.0078 16.2 3.4 2 24 321 343 321 346 0.95 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF615-202 - 736 3.4e-22 77.9 127.4 6 19 0.0044 4.4 7.4 0.3 2 11 349 358 349 373 0.84 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF615-202 - 736 3.4e-22 77.9 127.4 7 19 0.0011 1.1 9.3 0.6 2 24 377 399 377 402 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF615-202 - 736 3.4e-22 77.9 127.4 8 19 0.0037 3.7 7.7 3.5 2 24 405 427 404 430 0.87 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF615-202 - 736 3.4e-22 77.9 127.4 9 19 0.0038 3.8 7.6 0.2 2 11 433 442 433 456 0.88 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF615-202 - 736 3.4e-22 77.9 127.4 10 19 0.00064 0.64 10.1 0.2 2 25 461 484 461 486 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF615-202 - 736 3.4e-22 77.9 127.4 11 19 0.17 1.7e+02 2.4 0.2 2 12 489 499 489 512 0.86 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF615-202 - 736 3.4e-22 77.9 127.4 12 19 0.0017 1.7 8.7 0.1 2 24 517 539 517 542 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF615-202 - 736 3.4e-22 77.9 127.4 13 19 0.00079 0.79 9.8 1.2 2 24 545 567 545 570 0.92 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF615-202 - 736 3.4e-22 77.9 127.4 14 19 0.021 21 5.3 0.1 2 11 573 582 573 597 0.79 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF615-202 - 736 3.4e-22 77.9 127.4 15 19 0.0036 3.6 7.7 0.1 2 12 601 611 601 612 0.91 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF615-202 - 736 3.4e-22 77.9 127.4 16 19 0.0013 1.3 9.1 3.0 2 20 629 647 629 653 0.80 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF615-202 - 736 3.4e-22 77.9 127.4 17 19 0.15 1.5e+02 2.5 0.2 2 9 657 664 656 665 0.90 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF615-202 - 736 3.4e-22 77.9 127.4 18 19 0.0012 1.2 9.2 1.3 2 24 685 707 685 710 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF615-202 - 736 3.4e-22 77.9 127.4 19 19 0.019 19 5.4 0.5 2 25 713 736 713 736 0.91 C2H2-type zinc finger Zn-ribbon_8 PF09723.10 40 ZNF615-202 - 736 2.2e-16 59.7 83.0 1 14 0.0018 1.8 8.8 1.1 7 38 210 248 208 250 0.74 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF615-202 - 736 2.2e-16 59.7 83.0 2 14 0.0022 2.2 8.5 4.5 6 35 265 301 263 306 0.79 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF615-202 - 736 2.2e-16 59.7 83.0 3 14 0.08 80 3.5 7.1 6 35 293 329 292 362 0.66 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF615-202 - 736 2.2e-16 59.7 83.0 4 14 0.0068 6.8 6.9 1.2 6 34 349 384 348 389 0.79 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF615-202 - 736 2.2e-16 59.7 83.0 5 14 0.0014 1.4 9.1 1.6 6 34 377 412 376 415 0.80 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF615-202 - 736 2.2e-16 59.7 83.0 6 14 0.00036 0.36 11.0 4.2 6 34 405 440 404 447 0.92 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF615-202 - 736 2.2e-16 59.7 83.0 7 14 0.00042 0.42 10.8 2.6 6 34 433 468 432 474 0.89 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF615-202 - 736 2.2e-16 59.7 83.0 8 14 5.4e-05 0.054 13.6 0.7 6 34 461 496 459 504 0.90 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF615-202 - 736 2.2e-16 59.7 83.0 9 14 3.6e-05 0.036 14.2 0.5 6 34 489 524 488 532 0.90 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF615-202 - 736 2.2e-16 59.7 83.0 10 14 0.062 62 3.8 0.1 6 16 517 527 515 539 0.82 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF615-202 - 736 2.2e-16 59.7 83.0 11 14 9.5e-05 0.095 12.8 1.6 6 34 545 580 544 587 0.85 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF615-202 - 736 2.2e-16 59.7 83.0 12 14 0.00062 0.61 10.2 3.9 6 38 601 640 600 641 0.88 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF615-202 - 736 2.2e-16 59.7 83.0 13 14 0.00027 0.27 11.4 4.3 6 38 629 669 627 670 0.89 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF615-202 - 736 2.2e-16 59.7 83.0 14 14 1.5e-05 0.015 15.4 1.2 6 35 685 721 684 725 0.92 Zinc ribbon domain zinc_ribbon_9 PF14369.6 35 ZNF615-202 - 736 4.7e-12 45.9 52.3 1 18 0.062 62 4.0 0.0 20 32 206 219 195 221 0.74 zinc-ribbon zinc_ribbon_9 PF14369.6 35 ZNF615-202 - 736 4.7e-12 45.9 52.3 2 18 1.6 1.6e+03 -0.5 0.1 16 31 232 246 223 246 0.68 zinc-ribbon zinc_ribbon_9 PF14369.6 35 ZNF615-202 - 736 4.7e-12 45.9 52.3 3 18 0.57 5.7e+02 0.9 0.0 24 32 267 275 253 277 0.79 zinc-ribbon zinc_ribbon_9 PF14369.6 35 ZNF615-202 - 736 4.7e-12 45.9 52.3 4 18 0.089 89 3.5 0.0 23 32 294 303 280 305 0.79 zinc-ribbon zinc_ribbon_9 PF14369.6 35 ZNF615-202 - 736 4.7e-12 45.9 52.3 5 18 0.0014 1.4 9.3 0.2 22 33 348 360 335 362 0.75 zinc-ribbon zinc_ribbon_9 PF14369.6 35 ZNF615-202 - 736 4.7e-12 45.9 52.3 6 18 0.014 14 6.0 0.1 17 31 369 386 361 387 0.63 zinc-ribbon zinc_ribbon_9 PF14369.6 35 ZNF615-202 - 736 4.7e-12 45.9 52.3 7 18 0.058 58 4.1 0.1 20 31 401 414 393 414 0.72 zinc-ribbon zinc_ribbon_9 PF14369.6 35 ZNF615-202 - 736 4.7e-12 45.9 52.3 8 18 0.018 18 5.7 0.2 15 31 425 442 419 443 0.67 zinc-ribbon zinc_ribbon_9 PF14369.6 35 ZNF615-202 - 736 4.7e-12 45.9 52.3 9 18 0.049 49 4.3 0.0 18 31 458 470 449 472 0.69 zinc-ribbon zinc_ribbon_9 PF14369.6 35 ZNF615-202 - 736 4.7e-12 45.9 52.3 10 18 0.0053 5.2 7.4 0.0 15 31 481 498 475 500 0.71 zinc-ribbon zinc_ribbon_9 PF14369.6 35 ZNF615-202 - 736 4.7e-12 45.9 52.3 11 18 0.13 1.2e+02 3.0 0.0 20 31 514 526 503 526 0.66 zinc-ribbon zinc_ribbon_9 PF14369.6 35 ZNF615-202 - 736 4.7e-12 45.9 52.3 12 18 0.0018 1.8 8.9 0.1 22 33 544 556 535 557 0.71 zinc-ribbon zinc_ribbon_9 PF14369.6 35 ZNF615-202 - 736 4.7e-12 45.9 52.3 13 18 0.38 3.8e+02 1.5 0.0 12 30 562 581 559 582 0.65 zinc-ribbon zinc_ribbon_9 PF14369.6 35 ZNF615-202 - 736 4.7e-12 45.9 52.3 14 18 0.0093 9.2 6.6 0.0 22 31 600 610 589 612 0.70 zinc-ribbon zinc_ribbon_9 PF14369.6 35 ZNF615-202 - 736 4.7e-12 45.9 52.3 15 18 0.22 2.2e+02 2.2 0.1 22 31 628 638 615 638 0.64 zinc-ribbon zinc_ribbon_9 PF14369.6 35 ZNF615-202 - 736 4.7e-12 45.9 52.3 16 18 5.6 5.5e+03 -2.3 0.0 20 28 656 663 649 664 0.71 zinc-ribbon zinc_ribbon_9 PF14369.6 35 ZNF615-202 - 736 4.7e-12 45.9 52.3 17 18 0.56 5.6e+02 0.9 0.1 17 31 681 694 675 696 0.72 zinc-ribbon zinc_ribbon_9 PF14369.6 35 ZNF615-202 - 736 4.7e-12 45.9 52.3 18 18 2.4 2.4e+03 -1.1 0.1 23 31 714 722 701 724 0.72 zinc-ribbon zf_UBZ PF18439.1 32 ZNF615-202 - 736 3.2e-10 39.4 77.0 1 19 0.0066 6.6 6.4 0.1 3 15 209 221 207 228 0.76 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF615-202 - 736 3.2e-10 39.4 77.0 2 19 0.11 1.1e+02 2.5 0.1 3 15 237 249 235 256 0.79 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF615-202 - 736 3.2e-10 39.4 77.0 3 19 0.0083 8.3 6.1 0.5 2 17 264 280 263 284 0.79 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF615-202 - 736 3.2e-10 39.4 77.0 4 19 0.015 15 5.3 1.3 3 12 293 302 291 307 0.88 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF615-202 - 736 3.2e-10 39.4 77.0 5 19 0.17 1.7e+02 1.9 0.0 5 21 323 340 321 340 0.90 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF615-202 - 736 3.2e-10 39.4 77.0 6 19 0.0061 6.1 6.5 0.1 3 15 349 361 347 368 0.78 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF615-202 - 736 3.2e-10 39.4 77.0 7 19 0.075 74 3.1 0.0 3 15 377 389 375 396 0.74 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF615-202 - 736 3.2e-10 39.4 77.0 8 19 0.0036 3.6 7.3 0.5 3 14 405 416 403 420 0.87 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF615-202 - 736 3.2e-10 39.4 77.0 9 19 0.08 80 3.0 0.1 3 12 433 442 431 446 0.85 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF615-202 - 736 3.2e-10 39.4 77.0 10 19 0.073 73 3.1 0.1 3 14 461 472 459 480 0.78 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF615-202 - 736 3.2e-10 39.4 77.0 11 19 0.072 72 3.1 0.1 3 13 489 499 487 504 0.82 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF615-202 - 736 3.2e-10 39.4 77.0 12 19 0.0074 7.4 6.3 0.0 3 15 517 529 515 536 0.82 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF615-202 - 736 3.2e-10 39.4 77.0 13 19 0.046 46 3.7 0.1 3 14 545 556 543 561 0.84 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF615-202 - 736 3.2e-10 39.4 77.0 14 19 0.012 12 5.6 0.0 3 11 573 581 571 592 0.85 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF615-202 - 736 3.2e-10 39.4 77.0 15 19 0.054 53 3.5 0.1 3 13 601 611 599 619 0.85 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF615-202 - 736 3.2e-10 39.4 77.0 16 19 0.16 1.6e+02 2.0 1.4 3 13 629 639 627 651 0.79 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF615-202 - 736 3.2e-10 39.4 77.0 17 19 0.024 24 4.6 0.1 2 20 656 675 655 676 0.75 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF615-202 - 736 3.2e-10 39.4 77.0 18 19 0.016 15 5.2 0.1 3 12 685 694 683 701 0.87 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF615-202 - 736 3.2e-10 39.4 77.0 19 19 0.062 61 3.3 0.0 3 13 713 723 712 728 0.83 Ubiquitin-Binding Zinc Finger DUF3268 PF11672.8 118 ZNF615-202 - 736 2e-09 37.8 59.7 1 14 3.6 3.5e+03 -1.7 0.0 19 37 196 215 191 235 0.72 zinc-finger-containing domain DUF3268 PF11672.8 118 ZNF615-202 - 736 2e-09 37.8 59.7 2 14 0.21 2.1e+02 2.3 0.3 3 38 209 244 207 262 0.77 zinc-finger-containing domain DUF3268 PF11672.8 118 ZNF615-202 - 736 2e-09 37.8 59.7 3 14 0.01 10 6.5 0.9 2 38 236 272 235 288 0.71 zinc-finger-containing domain DUF3268 PF11672.8 118 ZNF615-202 - 736 2e-09 37.8 59.7 4 14 0.044 44 4.4 2.6 3 37 265 299 263 314 0.89 zinc-finger-containing domain DUF3268 PF11672.8 118 ZNF615-202 - 736 2e-09 37.8 59.7 5 14 0.032 32 4.9 1.4 2 38 292 328 291 339 0.84 zinc-finger-containing domain DUF3268 PF11672.8 118 ZNF615-202 - 736 2e-09 37.8 59.7 6 14 0.005 5 7.5 0.6 3 37 321 355 319 365 0.90 zinc-finger-containing domain DUF3268 PF11672.8 118 ZNF615-202 - 736 2e-09 37.8 59.7 7 14 0.00093 0.93 9.8 0.9 3 38 377 412 375 427 0.86 zinc-finger-containing domain DUF3268 PF11672.8 118 ZNF615-202 - 736 2e-09 37.8 59.7 8 14 0.0068 6.8 7.1 0.3 2 37 432 467 431 483 0.81 zinc-finger-containing domain DUF3268 PF11672.8 118 ZNF615-202 - 736 2e-09 37.8 59.7 9 14 0.00087 0.86 9.9 0.2 2 37 488 523 487 537 0.89 zinc-finger-containing domain DUF3268 PF11672.8 118 ZNF615-202 - 736 2e-09 37.8 59.7 10 14 0.00069 0.69 10.3 0.4 2 37 544 579 543 594 0.92 zinc-finger-containing domain DUF3268 PF11672.8 118 ZNF615-202 - 736 2e-09 37.8 59.7 11 14 0.00015 0.15 12.4 1.3 2 39 600 637 599 645 0.91 zinc-finger-containing domain DUF3268 PF11672.8 118 ZNF615-202 - 736 2e-09 37.8 59.7 12 14 2.3 2.3e+03 -1.1 0.1 26 39 652 665 636 677 0.73 zinc-finger-containing domain DUF3268 PF11672.8 118 ZNF615-202 - 736 2e-09 37.8 59.7 13 14 0.009 8.9 6.7 0.4 3 39 657 693 654 700 0.77 zinc-finger-containing domain DUF3268 PF11672.8 118 ZNF615-202 - 736 2e-09 37.8 59.7 14 14 0.00097 0.97 9.8 0.9 2 37 684 719 682 726 0.92 zinc-finger-containing domain # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF615-202.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF615-202.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF615-202.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF615-202.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF615-202.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:10:57 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF615-203.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF615-203.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF615-203.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF615-203.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF615-203.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:10:57 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZNF615-204 - 742 6.6e-128 412.0 125.1 1 20 0.00013 0.13 12.7 0.1 7 25 207 225 206 226 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF615-204 - 742 6.6e-128 412.0 125.1 2 20 1.3e-09 1.3e-06 28.6 0.7 5 25 233 253 230 254 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF615-204 - 742 6.6e-128 412.0 125.1 3 20 1.8e-07 0.00018 21.8 2.6 2 25 258 281 257 282 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF615-204 - 742 6.6e-128 412.0 125.1 4 20 7.4e-09 7.4e-06 26.2 0.2 2 24 286 308 285 310 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF615-204 - 742 6.6e-128 412.0 125.1 5 20 4e-10 4e-07 30.2 0.8 2 26 314 338 313 338 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF615-204 - 742 6.6e-128 412.0 125.1 6 20 7.2e-09 7.2e-06 26.2 0.3 1 24 341 364 341 365 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF615-204 - 742 6.6e-128 412.0 125.1 7 20 1.4e-07 0.00014 22.1 1.9 2 25 370 393 369 393 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF615-204 - 742 6.6e-128 412.0 125.1 8 20 8.4e-09 8.4e-06 26.0 0.2 2 25 398 421 397 421 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF615-204 - 742 6.6e-128 412.0 125.1 9 20 1.8e-10 1.8e-07 31.3 0.4 2 25 426 449 426 449 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF615-204 - 742 6.6e-128 412.0 125.1 10 20 1.3e-10 1.3e-07 31.7 1.0 2 25 454 477 454 477 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF615-204 - 742 6.6e-128 412.0 125.1 11 20 1.4e-06 0.0014 19.0 0.1 2 25 482 505 481 505 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF615-204 - 742 6.6e-128 412.0 125.1 12 20 8.2e-09 8.1e-06 26.0 0.2 4 24 512 532 509 533 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF615-204 - 742 6.6e-128 412.0 125.1 13 20 2.1e-08 2.1e-05 24.7 0.2 2 25 538 561 537 562 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF615-204 - 742 6.6e-128 412.0 125.1 14 20 1.1e-09 1.1e-06 28.8 1.0 1 22 565 586 565 589 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF615-204 - 742 6.6e-128 412.0 125.1 15 20 1.9e-08 1.9e-05 24.9 0.1 2 25 594 617 593 617 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF615-204 - 742 6.6e-128 412.0 125.1 16 20 5.8e-10 5.7e-07 29.7 1.4 2 25 622 645 621 646 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF615-204 - 742 6.6e-128 412.0 125.1 17 20 5.3e-07 0.00053 20.3 0.3 3 23 651 671 650 674 0.90 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF615-204 - 742 6.6e-128 412.0 125.1 18 20 1.2e-11 1.2e-08 35.0 0.2 2 26 678 702 677 702 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF615-204 - 742 6.6e-128 412.0 125.1 19 20 3.3e-10 3.3e-07 30.4 0.3 1 26 705 730 705 730 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF615-204 - 742 6.6e-128 412.0 125.1 20 20 6.7 6.7e+03 -2.1 1.6 2 10 734 742 734 742 0.89 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZNF615-204 - 742 5.3e-90 291.2 144.1 1 19 4.5e-05 0.044 14.2 0.7 1 23 215 237 215 237 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF615-204 - 742 5.3e-90 291.2 144.1 2 19 5.6e-08 5.6e-05 23.4 2.9 1 23 243 265 243 265 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF615-204 - 742 5.3e-90 291.2 144.1 3 19 1.3e-06 0.0013 19.0 1.3 1 23 271 293 271 293 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF615-204 - 742 5.3e-90 291.2 144.1 4 19 1.3e-05 0.013 15.9 3.6 1 23 299 321 299 321 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF615-204 - 742 5.3e-90 291.2 144.1 5 19 2.7e-07 0.00027 21.2 1.6 3 23 329 349 329 349 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF615-204 - 742 5.3e-90 291.2 144.1 6 19 1.1e-05 0.011 16.2 1.2 1 23 355 377 355 377 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF615-204 - 742 5.3e-90 291.2 144.1 7 19 2.2e-06 0.0022 18.4 0.6 1 23 383 405 383 405 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF615-204 - 742 5.3e-90 291.2 144.1 8 19 7.6e-07 0.00075 19.8 4.9 1 23 411 433 411 433 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF615-204 - 742 5.3e-90 291.2 144.1 9 19 1.2e-07 0.00012 22.4 0.4 1 23 439 461 439 461 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF615-204 - 742 5.3e-90 291.2 144.1 10 19 5.2e-08 5.2e-05 23.5 0.7 1 23 467 489 467 489 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF615-204 - 742 5.3e-90 291.2 144.1 11 19 3.7e-08 3.7e-05 23.9 0.3 1 23 495 517 495 517 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF615-204 - 742 5.3e-90 291.2 144.1 12 19 1.9e-06 0.0019 18.6 0.1 1 23 523 545 523 545 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF615-204 - 742 5.3e-90 291.2 144.1 13 19 1.7e-08 1.7e-05 25.0 1.6 1 23 551 573 551 573 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF615-204 - 742 5.3e-90 291.2 144.1 14 19 2.2e-07 0.00022 21.5 0.1 1 23 579 601 579 601 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF615-204 - 742 5.3e-90 291.2 144.1 15 19 2.8e-07 0.00028 21.2 0.4 1 23 607 629 607 629 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF615-204 - 742 5.3e-90 291.2 144.1 16 19 3.5e-06 0.0035 17.7 5.6 1 23 635 657 635 657 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF615-204 - 742 5.3e-90 291.2 144.1 17 19 0.0003 0.3 11.6 0.4 1 23 663 685 663 685 0.95 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF615-204 - 742 5.3e-90 291.2 144.1 18 19 3.1e-10 3e-07 30.5 0.9 1 23 691 713 691 713 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF615-204 - 742 5.3e-90 291.2 144.1 19 19 1.1e-05 0.011 16.2 0.5 3 23 721 741 719 741 0.97 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZNF615-204 - 742 1.1e-56 184.6 137.7 1 19 0.00094 0.94 10.5 1.0 1 23 215 237 215 238 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF615-204 - 742 1.1e-56 184.6 137.7 2 19 8.3e-06 0.0083 16.9 2.1 1 23 243 265 243 266 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF615-204 - 742 1.1e-56 184.6 137.7 3 19 9.6e-06 0.0096 16.7 0.9 1 23 271 293 271 294 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF615-204 - 742 1.1e-56 184.6 137.7 4 19 8.8e-05 0.088 13.7 2.7 1 23 299 321 299 322 0.97 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF615-204 - 742 1.1e-56 184.6 137.7 5 19 6.1e-06 0.006 17.3 2.1 3 23 329 349 327 350 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF615-204 - 742 1.1e-56 184.6 137.7 6 19 5.1e-05 0.051 14.4 0.8 1 23 355 377 355 378 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF615-204 - 742 1.1e-56 184.6 137.7 7 19 2.5e-05 0.025 15.4 0.4 1 23 383 405 383 406 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF615-204 - 742 1.1e-56 184.6 137.7 8 19 0.00013 0.13 13.1 4.0 1 23 411 433 411 434 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF615-204 - 742 1.1e-56 184.6 137.7 9 19 5.4e-06 0.0054 17.5 0.3 1 23 439 461 439 462 0.97 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF615-204 - 742 1.1e-56 184.6 137.7 10 19 2.9e-05 0.029 15.2 0.5 1 23 467 489 467 490 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF615-204 - 742 1.1e-56 184.6 137.7 11 19 2.2e-05 0.022 15.6 0.2 1 23 495 517 495 518 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF615-204 - 742 1.1e-56 184.6 137.7 12 19 0.00053 0.53 11.3 0.1 1 23 523 545 523 546 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF615-204 - 742 1.1e-56 184.6 137.7 13 19 4.4e-06 0.0043 17.8 1.0 1 23 551 573 551 574 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF615-204 - 742 1.1e-56 184.6 137.7 14 19 0.00017 0.17 12.8 0.1 1 23 579 601 579 602 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF615-204 - 742 1.1e-56 184.6 137.7 15 19 3.9e-05 0.039 14.8 0.3 1 23 607 629 607 630 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF615-204 - 742 1.1e-56 184.6 137.7 16 19 0.00043 0.43 11.5 4.2 1 23 635 657 635 658 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF615-204 - 742 1.1e-56 184.6 137.7 17 19 0.0012 1.2 10.1 0.3 1 23 663 685 663 686 0.91 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF615-204 - 742 1.1e-56 184.6 137.7 18 19 5.9e-07 0.00059 20.5 0.6 1 23 691 713 691 714 0.97 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF615-204 - 742 1.1e-56 184.6 137.7 19 19 0.007 6.9 7.8 0.5 2 23 720 741 719 742 0.90 C2H2-type zinc finger KRAB PF01352.27 42 ZNF615-204 - 742 7.6e-24 83.1 0.7 1 1 1.3e-26 1.3e-23 82.3 0.7 1 42 7 48 7 48 0.98 KRAB box zf-C2H2_6 PF13912.6 27 ZNF615-204 - 742 4.1e-22 77.7 127.4 1 19 0.0011 1.1 9.3 0.2 1 11 214 224 214 227 0.91 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF615-204 - 742 4.1e-22 77.7 127.4 2 19 0.0015 1.5 8.9 1.5 2 24 243 265 243 267 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF615-204 - 742 4.1e-22 77.7 127.4 3 19 7.9e-05 0.078 13.0 2.2 1 25 270 294 270 295 0.91 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF615-204 - 742 4.1e-22 77.7 127.4 4 19 0.027 27 4.9 1.5 2 11 299 308 299 322 0.89 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF615-204 - 742 4.1e-22 77.7 127.4 5 19 7.9e-06 0.0078 16.2 3.4 2 24 327 349 327 352 0.95 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF615-204 - 742 4.1e-22 77.7 127.4 6 19 0.0045 4.5 7.4 0.3 2 11 355 364 355 379 0.84 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF615-204 - 742 4.1e-22 77.7 127.4 7 19 0.0012 1.1 9.3 0.6 2 24 383 405 383 408 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF615-204 - 742 4.1e-22 77.7 127.4 8 19 0.0038 3.8 7.6 3.5 2 24 411 433 410 436 0.87 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF615-204 - 742 4.1e-22 77.7 127.4 9 19 0.0038 3.8 7.6 0.2 2 11 439 448 439 462 0.88 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF615-204 - 742 4.1e-22 77.7 127.4 10 19 0.00065 0.65 10.1 0.2 2 25 467 490 467 492 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF615-204 - 742 4.1e-22 77.7 127.4 11 19 0.17 1.7e+02 2.4 0.2 2 12 495 505 495 518 0.86 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF615-204 - 742 4.1e-22 77.7 127.4 12 19 0.0017 1.7 8.7 0.1 2 24 523 545 523 548 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF615-204 - 742 4.1e-22 77.7 127.4 13 19 0.0008 0.8 9.8 1.2 2 24 551 573 551 576 0.92 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF615-204 - 742 4.1e-22 77.7 127.4 14 19 0.021 21 5.3 0.1 2 11 579 588 579 603 0.79 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF615-204 - 742 4.1e-22 77.7 127.4 15 19 0.0037 3.7 7.7 0.1 2 12 607 617 607 618 0.91 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF615-204 - 742 4.1e-22 77.7 127.4 16 19 0.0013 1.3 9.1 3.0 2 20 635 653 635 659 0.80 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF615-204 - 742 4.1e-22 77.7 127.4 17 19 0.15 1.5e+02 2.5 0.2 2 9 663 670 662 671 0.90 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF615-204 - 742 4.1e-22 77.7 127.4 18 19 0.0013 1.3 9.2 1.3 2 24 691 713 691 716 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF615-204 - 742 4.1e-22 77.7 127.4 19 19 0.019 19 5.4 0.5 2 25 719 742 719 742 0.91 C2H2-type zinc finger Zn-ribbon_8 PF09723.10 40 ZNF615-204 - 742 1.9e-16 59.9 82.7 1 14 0.0018 1.8 8.8 1.1 7 38 216 254 214 256 0.74 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF615-204 - 742 1.9e-16 59.9 82.7 2 14 0.0018 1.8 8.8 4.2 6 35 271 307 269 312 0.79 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF615-204 - 742 1.9e-16 59.9 82.7 3 14 0.063 62 3.8 6.8 6 35 299 335 298 368 0.66 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF615-204 - 742 1.9e-16 59.9 82.7 4 14 0.0071 7.1 6.8 1.3 6 34 355 390 353 395 0.79 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF615-204 - 742 1.9e-16 59.9 82.7 5 14 0.0011 1.1 9.5 1.4 6 34 383 418 382 423 0.80 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF615-204 - 742 1.9e-16 59.9 82.7 6 14 0.00038 0.38 10.9 4.2 6 34 411 446 410 451 0.92 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF615-204 - 742 1.9e-16 59.9 82.7 7 14 0.00041 0.41 10.8 2.6 6 34 439 474 438 480 0.89 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF615-204 - 742 1.9e-16 59.9 82.7 8 14 5.7e-05 0.057 13.5 0.8 6 34 467 502 466 510 0.90 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF615-204 - 742 1.9e-16 59.9 82.7 9 14 3.9e-05 0.039 14.1 0.6 6 34 495 530 494 538 0.90 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF615-204 - 742 1.9e-16 59.9 82.7 10 14 0.065 64 3.8 0.1 6 16 523 533 522 545 0.81 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF615-204 - 742 1.9e-16 59.9 82.7 11 14 9e-05 0.09 12.9 1.5 6 34 551 586 550 593 0.85 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF615-204 - 742 1.9e-16 59.9 82.7 12 14 0.00059 0.59 10.3 3.8 6 38 607 646 606 647 0.88 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF615-204 - 742 1.9e-16 59.9 82.7 13 14 0.00028 0.28 11.3 4.3 6 38 635 675 633 676 0.89 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF615-204 - 742 1.9e-16 59.9 82.7 14 14 1.5e-05 0.015 15.4 1.2 6 35 691 727 690 731 0.92 Zinc ribbon domain zinc_ribbon_9 PF14369.6 35 ZNF615-204 - 742 5.5e-12 45.7 52.3 1 18 0.063 63 4.0 0.0 20 32 212 225 201 227 0.74 zinc-ribbon zinc_ribbon_9 PF14369.6 35 ZNF615-204 - 742 5.5e-12 45.7 52.3 2 18 1.6 1.6e+03 -0.6 0.1 16 31 238 252 229 252 0.68 zinc-ribbon zinc_ribbon_9 PF14369.6 35 ZNF615-204 - 742 5.5e-12 45.7 52.3 3 18 0.57 5.7e+02 0.9 0.0 24 32 273 281 259 283 0.79 zinc-ribbon zinc_ribbon_9 PF14369.6 35 ZNF615-204 - 742 5.5e-12 45.7 52.3 4 18 0.09 90 3.5 0.0 23 32 300 309 286 311 0.79 zinc-ribbon zinc_ribbon_9 PF14369.6 35 ZNF615-204 - 742 5.5e-12 45.7 52.3 5 18 0.0014 1.4 9.3 0.2 22 33 354 366 341 368 0.75 zinc-ribbon zinc_ribbon_9 PF14369.6 35 ZNF615-204 - 742 5.5e-12 45.7 52.3 6 18 0.015 15 6.0 0.1 17 31 375 392 367 393 0.63 zinc-ribbon zinc_ribbon_9 PF14369.6 35 ZNF615-204 - 742 5.5e-12 45.7 52.3 7 18 0.059 58 4.1 0.1 20 31 407 420 399 420 0.72 zinc-ribbon zinc_ribbon_9 PF14369.6 35 ZNF615-204 - 742 5.5e-12 45.7 52.3 8 18 0.018 18 5.7 0.2 15 31 431 448 425 449 0.67 zinc-ribbon zinc_ribbon_9 PF14369.6 35 ZNF615-204 - 742 5.5e-12 45.7 52.3 9 18 0.05 49 4.3 0.0 18 31 464 476 455 478 0.69 zinc-ribbon zinc_ribbon_9 PF14369.6 35 ZNF615-204 - 742 5.5e-12 45.7 52.3 10 18 0.0053 5.3 7.4 0.0 15 31 487 504 481 506 0.71 zinc-ribbon zinc_ribbon_9 PF14369.6 35 ZNF615-204 - 742 5.5e-12 45.7 52.3 11 18 0.13 1.3e+02 3.0 0.0 20 31 520 532 509 532 0.66 zinc-ribbon zinc_ribbon_9 PF14369.6 35 ZNF615-204 - 742 5.5e-12 45.7 52.3 12 18 0.0018 1.8 8.9 0.1 22 33 550 562 541 563 0.71 zinc-ribbon zinc_ribbon_9 PF14369.6 35 ZNF615-204 - 742 5.5e-12 45.7 52.3 13 18 0.38 3.8e+02 1.5 0.0 12 30 568 587 565 588 0.65 zinc-ribbon zinc_ribbon_9 PF14369.6 35 ZNF615-204 - 742 5.5e-12 45.7 52.3 14 18 0.0094 9.3 6.6 0.0 22 31 606 616 595 618 0.70 zinc-ribbon zinc_ribbon_9 PF14369.6 35 ZNF615-204 - 742 5.5e-12 45.7 52.3 15 18 0.22 2.2e+02 2.2 0.1 22 31 634 644 621 644 0.64 zinc-ribbon zinc_ribbon_9 PF14369.6 35 ZNF615-204 - 742 5.5e-12 45.7 52.3 16 18 5.6 5.6e+03 -2.3 0.0 20 28 662 669 655 670 0.71 zinc-ribbon zinc_ribbon_9 PF14369.6 35 ZNF615-204 - 742 5.5e-12 45.7 52.3 17 18 0.56 5.6e+02 0.9 0.1 17 31 687 700 681 702 0.72 zinc-ribbon zinc_ribbon_9 PF14369.6 35 ZNF615-204 - 742 5.5e-12 45.7 52.3 18 18 2.4 2.4e+03 -1.1 0.1 23 31 720 728 707 730 0.72 zinc-ribbon zf_UBZ PF18439.1 32 ZNF615-204 - 742 3.8e-10 39.2 77.0 1 19 0.0067 6.7 6.4 0.1 3 15 215 227 213 234 0.76 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF615-204 - 742 3.8e-10 39.2 77.0 2 19 0.12 1.2e+02 2.4 0.1 3 15 243 255 241 262 0.79 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF615-204 - 742 3.8e-10 39.2 77.0 3 19 0.0084 8.4 6.1 0.5 2 17 270 286 269 290 0.79 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF615-204 - 742 3.8e-10 39.2 77.0 4 19 0.015 15 5.2 1.3 3 12 299 308 297 313 0.88 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF615-204 - 742 3.8e-10 39.2 77.0 5 19 0.17 1.7e+02 1.9 0.0 5 21 329 346 327 346 0.90 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF615-204 - 742 3.8e-10 39.2 77.0 6 19 0.0062 6.1 6.5 0.1 3 15 355 367 353 374 0.78 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF615-204 - 742 3.8e-10 39.2 77.0 7 19 0.075 75 3.0 0.0 3 15 383 395 381 402 0.74 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF615-204 - 742 3.8e-10 39.2 77.0 8 19 0.0037 3.6 7.2 0.5 3 14 411 422 409 426 0.87 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF615-204 - 742 3.8e-10 39.2 77.0 9 19 0.081 81 2.9 0.1 3 12 439 448 437 452 0.85 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF615-204 - 742 3.8e-10 39.2 77.0 10 19 0.074 73 3.1 0.1 3 14 467 478 465 486 0.78 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF615-204 - 742 3.8e-10 39.2 77.0 11 19 0.073 73 3.1 0.1 3 13 495 505 493 510 0.82 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF615-204 - 742 3.8e-10 39.2 77.0 12 19 0.0075 7.5 6.2 0.0 3 15 523 535 521 542 0.82 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF615-204 - 742 3.8e-10 39.2 77.0 13 19 0.046 46 3.7 0.1 3 14 551 562 549 567 0.84 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF615-204 - 742 3.8e-10 39.2 77.0 14 19 0.012 12 5.5 0.0 3 11 579 587 577 598 0.85 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF615-204 - 742 3.8e-10 39.2 77.0 15 19 0.054 54 3.5 0.1 3 13 607 617 605 625 0.85 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF615-204 - 742 3.8e-10 39.2 77.0 16 19 0.16 1.6e+02 2.0 1.4 3 13 635 645 633 657 0.79 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF615-204 - 742 3.8e-10 39.2 77.0 17 19 0.024 24 4.6 0.1 2 20 662 681 661 682 0.75 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF615-204 - 742 3.8e-10 39.2 77.0 18 19 0.016 16 5.2 0.1 3 12 691 700 689 707 0.87 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF615-204 - 742 3.8e-10 39.2 77.0 19 19 0.062 62 3.3 0.0 3 13 719 729 718 734 0.83 Ubiquitin-Binding Zinc Finger DUF3268 PF11672.8 118 ZNF615-204 - 742 8.9e-09 35.7 62.5 1 15 3.4 3.4e+03 -1.7 0.0 34 68 84 118 65 129 0.67 zinc-finger-containing domain DUF3268 PF11672.8 118 ZNF615-204 - 742 8.9e-09 35.7 62.5 2 15 4 4e+03 -1.9 0.0 19 37 202 221 197 232 0.70 zinc-finger-containing domain DUF3268 PF11672.8 118 ZNF615-204 - 742 8.9e-09 35.7 62.5 3 15 0.23 2.3e+02 2.1 0.3 3 38 215 250 213 261 0.76 zinc-finger-containing domain DUF3268 PF11672.8 118 ZNF615-204 - 742 8.9e-09 35.7 62.5 4 15 0.0096 9.5 6.6 0.8 2 39 242 279 241 295 0.71 zinc-finger-containing domain DUF3268 PF11672.8 118 ZNF615-204 - 742 8.9e-09 35.7 62.5 5 15 0.049 49 4.3 2.8 3 37 271 305 269 322 0.88 zinc-finger-containing domain DUF3268 PF11672.8 118 ZNF615-204 - 742 8.9e-09 35.7 62.5 6 15 0.063 63 3.9 1.9 2 37 298 333 297 338 0.84 zinc-finger-containing domain DUF3268 PF11672.8 118 ZNF615-204 - 742 8.9e-09 35.7 62.5 7 15 0.005 5 7.5 0.6 3 37 327 361 325 371 0.90 zinc-finger-containing domain DUF3268 PF11672.8 118 ZNF615-204 - 742 8.9e-09 35.7 62.5 8 15 0.00094 0.94 9.8 0.9 3 38 383 418 381 433 0.86 zinc-finger-containing domain DUF3268 PF11672.8 118 ZNF615-204 - 742 8.9e-09 35.7 62.5 9 15 0.0069 6.9 7.0 0.3 2 37 438 473 437 489 0.81 zinc-finger-containing domain DUF3268 PF11672.8 118 ZNF615-204 - 742 8.9e-09 35.7 62.5 10 15 0.00087 0.87 9.9 0.2 2 37 494 529 493 543 0.89 zinc-finger-containing domain DUF3268 PF11672.8 118 ZNF615-204 - 742 8.9e-09 35.7 62.5 11 15 0.0007 0.7 10.2 0.4 2 37 550 585 549 600 0.92 zinc-finger-containing domain DUF3268 PF11672.8 118 ZNF615-204 - 742 8.9e-09 35.7 62.5 12 15 0.00015 0.15 12.4 1.3 2 39 606 643 605 651 0.91 zinc-finger-containing domain DUF3268 PF11672.8 118 ZNF615-204 - 742 8.9e-09 35.7 62.5 13 15 2.4 2.4e+03 -1.1 0.1 26 39 658 671 642 683 0.73 zinc-finger-containing domain DUF3268 PF11672.8 118 ZNF615-204 - 742 8.9e-09 35.7 62.5 14 15 0.009 9 6.7 0.4 3 39 663 699 660 706 0.77 zinc-finger-containing domain DUF3268 PF11672.8 118 ZNF615-204 - 742 8.9e-09 35.7 62.5 15 15 0.00098 0.98 9.8 0.9 2 37 690 725 688 732 0.92 zinc-finger-containing domain zinc_ribbon_15 PF17032.5 86 ZNF615-204 - 742 4e-07 30.7 72.7 1 9 0.26 2.5e+02 2.5 0.3 47 75 195 224 175 230 0.57 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF615-204 - 742 4e-07 30.7 72.7 2 9 0.012 12 6.7 7.2 25 77 230 282 225 317 0.91 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF615-204 - 742 4e-07 30.7 72.7 3 9 0.029 29 5.5 5.8 32 75 321 364 299 372 0.83 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF615-204 - 742 4e-07 30.7 72.7 4 9 0.0028 2.8 8.8 1.8 34 75 379 420 372 427 0.84 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF615-204 - 742 4e-07 30.7 72.7 5 9 0.006 6 7.7 1.6 31 76 432 477 422 482 0.82 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF615-204 - 742 4e-07 30.7 72.7 6 9 0.011 11 6.9 0.2 34 78 491 535 482 541 0.83 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF615-204 - 742 4e-07 30.7 72.7 7 9 0.0028 2.8 8.8 0.7 35 76 548 589 538 597 0.84 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF615-204 - 742 4e-07 30.7 72.7 8 9 0.0031 3.1 8.6 2.4 32 77 601 646 591 648 0.83 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF615-204 - 742 4e-07 30.7 72.7 9 9 0.0066 6.5 7.6 4.7 23 77 648 702 645 732 0.79 zinc-ribbon family # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF615-204.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF615-204.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF615-204.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF615-204.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF615-204.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:10:58 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF615-205.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF615-205.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF615-205.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF615-205.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF615-205.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:10:58 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- KRAB PF01352.27 42 ZNF615-206 - 98 3.9e-25 87.2 0.7 1 1 2.9e-29 5.2e-25 86.8 0.7 1 42 7 48 7 48 0.98 KRAB box # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF615-206.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF615-206.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF615-206.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF615-206.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF615-206.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:10:58 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF615-207.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF615-207.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF615-207.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF615-207.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF615-207.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:10:59 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZNF615-208 - 742 6.6e-128 412.0 125.1 1 20 0.00013 0.13 12.7 0.1 7 25 207 225 206 226 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF615-208 - 742 6.6e-128 412.0 125.1 2 20 1.3e-09 1.3e-06 28.6 0.7 5 25 233 253 230 254 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF615-208 - 742 6.6e-128 412.0 125.1 3 20 1.8e-07 0.00018 21.8 2.6 2 25 258 281 257 282 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF615-208 - 742 6.6e-128 412.0 125.1 4 20 7.4e-09 7.4e-06 26.2 0.2 2 24 286 308 285 310 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF615-208 - 742 6.6e-128 412.0 125.1 5 20 4e-10 4e-07 30.2 0.8 2 26 314 338 313 338 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF615-208 - 742 6.6e-128 412.0 125.1 6 20 7.2e-09 7.2e-06 26.2 0.3 1 24 341 364 341 365 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF615-208 - 742 6.6e-128 412.0 125.1 7 20 1.4e-07 0.00014 22.1 1.9 2 25 370 393 369 393 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF615-208 - 742 6.6e-128 412.0 125.1 8 20 8.4e-09 8.4e-06 26.0 0.2 2 25 398 421 397 421 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF615-208 - 742 6.6e-128 412.0 125.1 9 20 1.8e-10 1.8e-07 31.3 0.4 2 25 426 449 426 449 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF615-208 - 742 6.6e-128 412.0 125.1 10 20 1.3e-10 1.3e-07 31.7 1.0 2 25 454 477 454 477 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF615-208 - 742 6.6e-128 412.0 125.1 11 20 1.4e-06 0.0014 19.0 0.1 2 25 482 505 481 505 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF615-208 - 742 6.6e-128 412.0 125.1 12 20 8.2e-09 8.1e-06 26.0 0.2 4 24 512 532 509 533 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF615-208 - 742 6.6e-128 412.0 125.1 13 20 2.1e-08 2.1e-05 24.7 0.2 2 25 538 561 537 562 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF615-208 - 742 6.6e-128 412.0 125.1 14 20 1.1e-09 1.1e-06 28.8 1.0 1 22 565 586 565 589 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF615-208 - 742 6.6e-128 412.0 125.1 15 20 1.9e-08 1.9e-05 24.9 0.1 2 25 594 617 593 617 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF615-208 - 742 6.6e-128 412.0 125.1 16 20 5.8e-10 5.7e-07 29.7 1.4 2 25 622 645 621 646 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF615-208 - 742 6.6e-128 412.0 125.1 17 20 5.3e-07 0.00053 20.3 0.3 3 23 651 671 650 674 0.90 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF615-208 - 742 6.6e-128 412.0 125.1 18 20 1.2e-11 1.2e-08 35.0 0.2 2 26 678 702 677 702 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF615-208 - 742 6.6e-128 412.0 125.1 19 20 3.3e-10 3.3e-07 30.4 0.3 1 26 705 730 705 730 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF615-208 - 742 6.6e-128 412.0 125.1 20 20 6.7 6.7e+03 -2.1 1.6 2 10 734 742 734 742 0.89 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZNF615-208 - 742 5.3e-90 291.2 144.1 1 19 4.5e-05 0.044 14.2 0.7 1 23 215 237 215 237 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF615-208 - 742 5.3e-90 291.2 144.1 2 19 5.6e-08 5.6e-05 23.4 2.9 1 23 243 265 243 265 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF615-208 - 742 5.3e-90 291.2 144.1 3 19 1.3e-06 0.0013 19.0 1.3 1 23 271 293 271 293 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF615-208 - 742 5.3e-90 291.2 144.1 4 19 1.3e-05 0.013 15.9 3.6 1 23 299 321 299 321 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF615-208 - 742 5.3e-90 291.2 144.1 5 19 2.7e-07 0.00027 21.2 1.6 3 23 329 349 329 349 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF615-208 - 742 5.3e-90 291.2 144.1 6 19 1.1e-05 0.011 16.2 1.2 1 23 355 377 355 377 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF615-208 - 742 5.3e-90 291.2 144.1 7 19 2.2e-06 0.0022 18.4 0.6 1 23 383 405 383 405 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF615-208 - 742 5.3e-90 291.2 144.1 8 19 7.6e-07 0.00075 19.8 4.9 1 23 411 433 411 433 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF615-208 - 742 5.3e-90 291.2 144.1 9 19 1.2e-07 0.00012 22.4 0.4 1 23 439 461 439 461 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF615-208 - 742 5.3e-90 291.2 144.1 10 19 5.2e-08 5.2e-05 23.5 0.7 1 23 467 489 467 489 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF615-208 - 742 5.3e-90 291.2 144.1 11 19 3.7e-08 3.7e-05 23.9 0.3 1 23 495 517 495 517 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF615-208 - 742 5.3e-90 291.2 144.1 12 19 1.9e-06 0.0019 18.6 0.1 1 23 523 545 523 545 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF615-208 - 742 5.3e-90 291.2 144.1 13 19 1.7e-08 1.7e-05 25.0 1.6 1 23 551 573 551 573 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF615-208 - 742 5.3e-90 291.2 144.1 14 19 2.2e-07 0.00022 21.5 0.1 1 23 579 601 579 601 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF615-208 - 742 5.3e-90 291.2 144.1 15 19 2.8e-07 0.00028 21.2 0.4 1 23 607 629 607 629 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF615-208 - 742 5.3e-90 291.2 144.1 16 19 3.5e-06 0.0035 17.7 5.6 1 23 635 657 635 657 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF615-208 - 742 5.3e-90 291.2 144.1 17 19 0.0003 0.3 11.6 0.4 1 23 663 685 663 685 0.95 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF615-208 - 742 5.3e-90 291.2 144.1 18 19 3.1e-10 3e-07 30.5 0.9 1 23 691 713 691 713 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF615-208 - 742 5.3e-90 291.2 144.1 19 19 1.1e-05 0.011 16.2 0.5 3 23 721 741 719 741 0.97 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZNF615-208 - 742 1.1e-56 184.6 137.7 1 19 0.00094 0.94 10.5 1.0 1 23 215 237 215 238 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF615-208 - 742 1.1e-56 184.6 137.7 2 19 8.3e-06 0.0083 16.9 2.1 1 23 243 265 243 266 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF615-208 - 742 1.1e-56 184.6 137.7 3 19 9.6e-06 0.0096 16.7 0.9 1 23 271 293 271 294 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF615-208 - 742 1.1e-56 184.6 137.7 4 19 8.8e-05 0.088 13.7 2.7 1 23 299 321 299 322 0.97 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF615-208 - 742 1.1e-56 184.6 137.7 5 19 6.1e-06 0.006 17.3 2.1 3 23 329 349 327 350 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF615-208 - 742 1.1e-56 184.6 137.7 6 19 5.1e-05 0.051 14.4 0.8 1 23 355 377 355 378 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF615-208 - 742 1.1e-56 184.6 137.7 7 19 2.5e-05 0.025 15.4 0.4 1 23 383 405 383 406 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF615-208 - 742 1.1e-56 184.6 137.7 8 19 0.00013 0.13 13.1 4.0 1 23 411 433 411 434 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF615-208 - 742 1.1e-56 184.6 137.7 9 19 5.4e-06 0.0054 17.5 0.3 1 23 439 461 439 462 0.97 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF615-208 - 742 1.1e-56 184.6 137.7 10 19 2.9e-05 0.029 15.2 0.5 1 23 467 489 467 490 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF615-208 - 742 1.1e-56 184.6 137.7 11 19 2.2e-05 0.022 15.6 0.2 1 23 495 517 495 518 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF615-208 - 742 1.1e-56 184.6 137.7 12 19 0.00053 0.53 11.3 0.1 1 23 523 545 523 546 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF615-208 - 742 1.1e-56 184.6 137.7 13 19 4.4e-06 0.0043 17.8 1.0 1 23 551 573 551 574 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF615-208 - 742 1.1e-56 184.6 137.7 14 19 0.00017 0.17 12.8 0.1 1 23 579 601 579 602 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF615-208 - 742 1.1e-56 184.6 137.7 15 19 3.9e-05 0.039 14.8 0.3 1 23 607 629 607 630 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF615-208 - 742 1.1e-56 184.6 137.7 16 19 0.00043 0.43 11.5 4.2 1 23 635 657 635 658 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF615-208 - 742 1.1e-56 184.6 137.7 17 19 0.0012 1.2 10.1 0.3 1 23 663 685 663 686 0.91 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF615-208 - 742 1.1e-56 184.6 137.7 18 19 5.9e-07 0.00059 20.5 0.6 1 23 691 713 691 714 0.97 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF615-208 - 742 1.1e-56 184.6 137.7 19 19 0.007 6.9 7.8 0.5 2 23 720 741 719 742 0.90 C2H2-type zinc finger KRAB PF01352.27 42 ZNF615-208 - 742 7.6e-24 83.1 0.7 1 1 1.3e-26 1.3e-23 82.3 0.7 1 42 7 48 7 48 0.98 KRAB box zf-C2H2_6 PF13912.6 27 ZNF615-208 - 742 4.1e-22 77.7 127.4 1 19 0.0011 1.1 9.3 0.2 1 11 214 224 214 227 0.91 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF615-208 - 742 4.1e-22 77.7 127.4 2 19 0.0015 1.5 8.9 1.5 2 24 243 265 243 267 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF615-208 - 742 4.1e-22 77.7 127.4 3 19 7.9e-05 0.078 13.0 2.2 1 25 270 294 270 295 0.91 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF615-208 - 742 4.1e-22 77.7 127.4 4 19 0.027 27 4.9 1.5 2 11 299 308 299 322 0.89 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF615-208 - 742 4.1e-22 77.7 127.4 5 19 7.9e-06 0.0078 16.2 3.4 2 24 327 349 327 352 0.95 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF615-208 - 742 4.1e-22 77.7 127.4 6 19 0.0045 4.5 7.4 0.3 2 11 355 364 355 379 0.84 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF615-208 - 742 4.1e-22 77.7 127.4 7 19 0.0012 1.1 9.3 0.6 2 24 383 405 383 408 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF615-208 - 742 4.1e-22 77.7 127.4 8 19 0.0038 3.8 7.6 3.5 2 24 411 433 410 436 0.87 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF615-208 - 742 4.1e-22 77.7 127.4 9 19 0.0038 3.8 7.6 0.2 2 11 439 448 439 462 0.88 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF615-208 - 742 4.1e-22 77.7 127.4 10 19 0.00065 0.65 10.1 0.2 2 25 467 490 467 492 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF615-208 - 742 4.1e-22 77.7 127.4 11 19 0.17 1.7e+02 2.4 0.2 2 12 495 505 495 518 0.86 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF615-208 - 742 4.1e-22 77.7 127.4 12 19 0.0017 1.7 8.7 0.1 2 24 523 545 523 548 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF615-208 - 742 4.1e-22 77.7 127.4 13 19 0.0008 0.8 9.8 1.2 2 24 551 573 551 576 0.92 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF615-208 - 742 4.1e-22 77.7 127.4 14 19 0.021 21 5.3 0.1 2 11 579 588 579 603 0.79 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF615-208 - 742 4.1e-22 77.7 127.4 15 19 0.0037 3.7 7.7 0.1 2 12 607 617 607 618 0.91 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF615-208 - 742 4.1e-22 77.7 127.4 16 19 0.0013 1.3 9.1 3.0 2 20 635 653 635 659 0.80 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF615-208 - 742 4.1e-22 77.7 127.4 17 19 0.15 1.5e+02 2.5 0.2 2 9 663 670 662 671 0.90 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF615-208 - 742 4.1e-22 77.7 127.4 18 19 0.0013 1.3 9.2 1.3 2 24 691 713 691 716 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF615-208 - 742 4.1e-22 77.7 127.4 19 19 0.019 19 5.4 0.5 2 25 719 742 719 742 0.91 C2H2-type zinc finger Zn-ribbon_8 PF09723.10 40 ZNF615-208 - 742 1.9e-16 59.9 82.7 1 14 0.0018 1.8 8.8 1.1 7 38 216 254 214 256 0.74 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF615-208 - 742 1.9e-16 59.9 82.7 2 14 0.0018 1.8 8.8 4.2 6 35 271 307 269 312 0.79 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF615-208 - 742 1.9e-16 59.9 82.7 3 14 0.063 62 3.8 6.8 6 35 299 335 298 368 0.66 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF615-208 - 742 1.9e-16 59.9 82.7 4 14 0.0071 7.1 6.8 1.3 6 34 355 390 353 395 0.79 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF615-208 - 742 1.9e-16 59.9 82.7 5 14 0.0011 1.1 9.5 1.4 6 34 383 418 382 423 0.80 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF615-208 - 742 1.9e-16 59.9 82.7 6 14 0.00038 0.38 10.9 4.2 6 34 411 446 410 451 0.92 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF615-208 - 742 1.9e-16 59.9 82.7 7 14 0.00041 0.41 10.8 2.6 6 34 439 474 438 480 0.89 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF615-208 - 742 1.9e-16 59.9 82.7 8 14 5.7e-05 0.057 13.5 0.8 6 34 467 502 466 510 0.90 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF615-208 - 742 1.9e-16 59.9 82.7 9 14 3.9e-05 0.039 14.1 0.6 6 34 495 530 494 538 0.90 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF615-208 - 742 1.9e-16 59.9 82.7 10 14 0.065 64 3.8 0.1 6 16 523 533 522 545 0.81 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF615-208 - 742 1.9e-16 59.9 82.7 11 14 9e-05 0.09 12.9 1.5 6 34 551 586 550 593 0.85 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF615-208 - 742 1.9e-16 59.9 82.7 12 14 0.00059 0.59 10.3 3.8 6 38 607 646 606 647 0.88 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF615-208 - 742 1.9e-16 59.9 82.7 13 14 0.00028 0.28 11.3 4.3 6 38 635 675 633 676 0.89 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF615-208 - 742 1.9e-16 59.9 82.7 14 14 1.5e-05 0.015 15.4 1.2 6 35 691 727 690 731 0.92 Zinc ribbon domain zinc_ribbon_9 PF14369.6 35 ZNF615-208 - 742 5.5e-12 45.7 52.3 1 18 0.063 63 4.0 0.0 20 32 212 225 201 227 0.74 zinc-ribbon zinc_ribbon_9 PF14369.6 35 ZNF615-208 - 742 5.5e-12 45.7 52.3 2 18 1.6 1.6e+03 -0.6 0.1 16 31 238 252 229 252 0.68 zinc-ribbon zinc_ribbon_9 PF14369.6 35 ZNF615-208 - 742 5.5e-12 45.7 52.3 3 18 0.57 5.7e+02 0.9 0.0 24 32 273 281 259 283 0.79 zinc-ribbon zinc_ribbon_9 PF14369.6 35 ZNF615-208 - 742 5.5e-12 45.7 52.3 4 18 0.09 90 3.5 0.0 23 32 300 309 286 311 0.79 zinc-ribbon zinc_ribbon_9 PF14369.6 35 ZNF615-208 - 742 5.5e-12 45.7 52.3 5 18 0.0014 1.4 9.3 0.2 22 33 354 366 341 368 0.75 zinc-ribbon zinc_ribbon_9 PF14369.6 35 ZNF615-208 - 742 5.5e-12 45.7 52.3 6 18 0.015 15 6.0 0.1 17 31 375 392 367 393 0.63 zinc-ribbon zinc_ribbon_9 PF14369.6 35 ZNF615-208 - 742 5.5e-12 45.7 52.3 7 18 0.059 58 4.1 0.1 20 31 407 420 399 420 0.72 zinc-ribbon zinc_ribbon_9 PF14369.6 35 ZNF615-208 - 742 5.5e-12 45.7 52.3 8 18 0.018 18 5.7 0.2 15 31 431 448 425 449 0.67 zinc-ribbon zinc_ribbon_9 PF14369.6 35 ZNF615-208 - 742 5.5e-12 45.7 52.3 9 18 0.05 49 4.3 0.0 18 31 464 476 455 478 0.69 zinc-ribbon zinc_ribbon_9 PF14369.6 35 ZNF615-208 - 742 5.5e-12 45.7 52.3 10 18 0.0053 5.3 7.4 0.0 15 31 487 504 481 506 0.71 zinc-ribbon zinc_ribbon_9 PF14369.6 35 ZNF615-208 - 742 5.5e-12 45.7 52.3 11 18 0.13 1.3e+02 3.0 0.0 20 31 520 532 509 532 0.66 zinc-ribbon zinc_ribbon_9 PF14369.6 35 ZNF615-208 - 742 5.5e-12 45.7 52.3 12 18 0.0018 1.8 8.9 0.1 22 33 550 562 541 563 0.71 zinc-ribbon zinc_ribbon_9 PF14369.6 35 ZNF615-208 - 742 5.5e-12 45.7 52.3 13 18 0.38 3.8e+02 1.5 0.0 12 30 568 587 565 588 0.65 zinc-ribbon zinc_ribbon_9 PF14369.6 35 ZNF615-208 - 742 5.5e-12 45.7 52.3 14 18 0.0094 9.3 6.6 0.0 22 31 606 616 595 618 0.70 zinc-ribbon zinc_ribbon_9 PF14369.6 35 ZNF615-208 - 742 5.5e-12 45.7 52.3 15 18 0.22 2.2e+02 2.2 0.1 22 31 634 644 621 644 0.64 zinc-ribbon zinc_ribbon_9 PF14369.6 35 ZNF615-208 - 742 5.5e-12 45.7 52.3 16 18 5.6 5.6e+03 -2.3 0.0 20 28 662 669 655 670 0.71 zinc-ribbon zinc_ribbon_9 PF14369.6 35 ZNF615-208 - 742 5.5e-12 45.7 52.3 17 18 0.56 5.6e+02 0.9 0.1 17 31 687 700 681 702 0.72 zinc-ribbon zinc_ribbon_9 PF14369.6 35 ZNF615-208 - 742 5.5e-12 45.7 52.3 18 18 2.4 2.4e+03 -1.1 0.1 23 31 720 728 707 730 0.72 zinc-ribbon zf_UBZ PF18439.1 32 ZNF615-208 - 742 3.8e-10 39.2 77.0 1 19 0.0067 6.7 6.4 0.1 3 15 215 227 213 234 0.76 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF615-208 - 742 3.8e-10 39.2 77.0 2 19 0.12 1.2e+02 2.4 0.1 3 15 243 255 241 262 0.79 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF615-208 - 742 3.8e-10 39.2 77.0 3 19 0.0084 8.4 6.1 0.5 2 17 270 286 269 290 0.79 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF615-208 - 742 3.8e-10 39.2 77.0 4 19 0.015 15 5.2 1.3 3 12 299 308 297 313 0.88 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF615-208 - 742 3.8e-10 39.2 77.0 5 19 0.17 1.7e+02 1.9 0.0 5 21 329 346 327 346 0.90 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF615-208 - 742 3.8e-10 39.2 77.0 6 19 0.0062 6.1 6.5 0.1 3 15 355 367 353 374 0.78 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF615-208 - 742 3.8e-10 39.2 77.0 7 19 0.075 75 3.0 0.0 3 15 383 395 381 402 0.74 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF615-208 - 742 3.8e-10 39.2 77.0 8 19 0.0037 3.6 7.2 0.5 3 14 411 422 409 426 0.87 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF615-208 - 742 3.8e-10 39.2 77.0 9 19 0.081 81 2.9 0.1 3 12 439 448 437 452 0.85 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF615-208 - 742 3.8e-10 39.2 77.0 10 19 0.074 73 3.1 0.1 3 14 467 478 465 486 0.78 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF615-208 - 742 3.8e-10 39.2 77.0 11 19 0.073 73 3.1 0.1 3 13 495 505 493 510 0.82 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF615-208 - 742 3.8e-10 39.2 77.0 12 19 0.0075 7.5 6.2 0.0 3 15 523 535 521 542 0.82 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF615-208 - 742 3.8e-10 39.2 77.0 13 19 0.046 46 3.7 0.1 3 14 551 562 549 567 0.84 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF615-208 - 742 3.8e-10 39.2 77.0 14 19 0.012 12 5.5 0.0 3 11 579 587 577 598 0.85 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF615-208 - 742 3.8e-10 39.2 77.0 15 19 0.054 54 3.5 0.1 3 13 607 617 605 625 0.85 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF615-208 - 742 3.8e-10 39.2 77.0 16 19 0.16 1.6e+02 2.0 1.4 3 13 635 645 633 657 0.79 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF615-208 - 742 3.8e-10 39.2 77.0 17 19 0.024 24 4.6 0.1 2 20 662 681 661 682 0.75 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF615-208 - 742 3.8e-10 39.2 77.0 18 19 0.016 16 5.2 0.1 3 12 691 700 689 707 0.87 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF615-208 - 742 3.8e-10 39.2 77.0 19 19 0.062 62 3.3 0.0 3 13 719 729 718 734 0.83 Ubiquitin-Binding Zinc Finger DUF3268 PF11672.8 118 ZNF615-208 - 742 8.9e-09 35.7 62.5 1 15 3.4 3.4e+03 -1.7 0.0 34 68 84 118 65 129 0.67 zinc-finger-containing domain DUF3268 PF11672.8 118 ZNF615-208 - 742 8.9e-09 35.7 62.5 2 15 4 4e+03 -1.9 0.0 19 37 202 221 197 232 0.70 zinc-finger-containing domain DUF3268 PF11672.8 118 ZNF615-208 - 742 8.9e-09 35.7 62.5 3 15 0.23 2.3e+02 2.1 0.3 3 38 215 250 213 261 0.76 zinc-finger-containing domain DUF3268 PF11672.8 118 ZNF615-208 - 742 8.9e-09 35.7 62.5 4 15 0.0096 9.5 6.6 0.8 2 39 242 279 241 295 0.71 zinc-finger-containing domain DUF3268 PF11672.8 118 ZNF615-208 - 742 8.9e-09 35.7 62.5 5 15 0.049 49 4.3 2.8 3 37 271 305 269 322 0.88 zinc-finger-containing domain DUF3268 PF11672.8 118 ZNF615-208 - 742 8.9e-09 35.7 62.5 6 15 0.063 63 3.9 1.9 2 37 298 333 297 338 0.84 zinc-finger-containing domain DUF3268 PF11672.8 118 ZNF615-208 - 742 8.9e-09 35.7 62.5 7 15 0.005 5 7.5 0.6 3 37 327 361 325 371 0.90 zinc-finger-containing domain DUF3268 PF11672.8 118 ZNF615-208 - 742 8.9e-09 35.7 62.5 8 15 0.00094 0.94 9.8 0.9 3 38 383 418 381 433 0.86 zinc-finger-containing domain DUF3268 PF11672.8 118 ZNF615-208 - 742 8.9e-09 35.7 62.5 9 15 0.0069 6.9 7.0 0.3 2 37 438 473 437 489 0.81 zinc-finger-containing domain DUF3268 PF11672.8 118 ZNF615-208 - 742 8.9e-09 35.7 62.5 10 15 0.00087 0.87 9.9 0.2 2 37 494 529 493 543 0.89 zinc-finger-containing domain DUF3268 PF11672.8 118 ZNF615-208 - 742 8.9e-09 35.7 62.5 11 15 0.0007 0.7 10.2 0.4 2 37 550 585 549 600 0.92 zinc-finger-containing domain DUF3268 PF11672.8 118 ZNF615-208 - 742 8.9e-09 35.7 62.5 12 15 0.00015 0.15 12.4 1.3 2 39 606 643 605 651 0.91 zinc-finger-containing domain DUF3268 PF11672.8 118 ZNF615-208 - 742 8.9e-09 35.7 62.5 13 15 2.4 2.4e+03 -1.1 0.1 26 39 658 671 642 683 0.73 zinc-finger-containing domain DUF3268 PF11672.8 118 ZNF615-208 - 742 8.9e-09 35.7 62.5 14 15 0.009 9 6.7 0.4 3 39 663 699 660 706 0.77 zinc-finger-containing domain DUF3268 PF11672.8 118 ZNF615-208 - 742 8.9e-09 35.7 62.5 15 15 0.00098 0.98 9.8 0.9 2 37 690 725 688 732 0.92 zinc-finger-containing domain zinc_ribbon_15 PF17032.5 86 ZNF615-208 - 742 4e-07 30.7 72.7 1 9 0.26 2.5e+02 2.5 0.3 47 75 195 224 175 230 0.57 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF615-208 - 742 4e-07 30.7 72.7 2 9 0.012 12 6.7 7.2 25 77 230 282 225 317 0.91 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF615-208 - 742 4e-07 30.7 72.7 3 9 0.029 29 5.5 5.8 32 75 321 364 299 372 0.83 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF615-208 - 742 4e-07 30.7 72.7 4 9 0.0028 2.8 8.8 1.8 34 75 379 420 372 427 0.84 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF615-208 - 742 4e-07 30.7 72.7 5 9 0.006 6 7.7 1.6 31 76 432 477 422 482 0.82 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF615-208 - 742 4e-07 30.7 72.7 6 9 0.011 11 6.9 0.2 34 78 491 535 482 541 0.83 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF615-208 - 742 4e-07 30.7 72.7 7 9 0.0028 2.8 8.8 0.7 35 76 548 589 538 597 0.84 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF615-208 - 742 4e-07 30.7 72.7 8 9 0.0031 3.1 8.6 2.4 32 77 601 646 591 648 0.83 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF615-208 - 742 4e-07 30.7 72.7 9 9 0.0066 6.5 7.6 4.7 23 77 648 702 645 732 0.79 zinc-ribbon family # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF615-208.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF615-208.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF615-208.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF615-208.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF615-208.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:10:59 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- KRAB PF01352.27 42 ZNF615-209 - 103 4.4e-25 87.1 0.7 1 1 3.3e-29 5.9e-25 86.7 0.7 1 42 12 53 12 53 0.98 KRAB box # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF615-209.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF615-209.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF615-209.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF615-209.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF615-209.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:11:00 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZNF615-210 - 623 1.4e-129 417.3 125.1 1 20 0.00011 0.11 13.0 0.1 7 25 88 106 87 107 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF615-210 - 623 1.4e-129 417.3 125.1 2 20 1.1e-09 1e-06 28.8 0.7 5 25 114 134 111 135 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF615-210 - 623 1.4e-129 417.3 125.1 3 20 1.6e-07 0.00015 22.1 2.6 2 25 139 162 138 163 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF615-210 - 623 1.4e-129 417.3 125.1 4 20 6.4e-09 6e-06 26.4 0.2 2 24 167 189 166 191 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF615-210 - 623 1.4e-129 417.3 125.1 5 20 3.4e-10 3.2e-07 30.5 0.8 2 26 195 219 194 219 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF615-210 - 623 1.4e-129 417.3 125.1 6 20 6.2e-09 5.8e-06 26.5 0.3 1 24 222 245 222 246 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF615-210 - 623 1.4e-129 417.3 125.1 7 20 1.2e-07 0.00012 22.4 1.9 2 25 251 274 250 274 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF615-210 - 623 1.4e-129 417.3 125.1 8 20 7.2e-09 6.8e-06 26.3 0.2 2 25 279 302 278 302 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF615-210 - 623 1.4e-129 417.3 125.1 9 20 1.5e-10 1.4e-07 31.6 0.4 2 25 307 330 307 330 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF615-210 - 623 1.4e-129 417.3 125.1 10 20 1.1e-10 1e-07 32.0 1.0 2 25 335 358 335 358 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF615-210 - 623 1.4e-129 417.3 125.1 11 20 1.2e-06 0.0011 19.3 0.1 2 25 363 386 362 386 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF615-210 - 623 1.4e-129 417.3 125.1 12 20 7e-09 6.6e-06 26.3 0.2 4 24 393 413 390 414 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF615-210 - 623 1.4e-129 417.3 125.1 13 20 1.8e-08 1.7e-05 25.0 0.2 2 25 419 442 418 443 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF615-210 - 623 1.4e-129 417.3 125.1 14 20 9.4e-10 8.9e-07 29.1 1.0 1 22 446 467 446 470 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF615-210 - 623 1.4e-129 417.3 125.1 15 20 1.6e-08 1.5e-05 25.2 0.1 2 25 475 498 474 498 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF615-210 - 623 1.4e-129 417.3 125.1 16 20 5e-10 4.7e-07 29.9 1.4 2 25 503 526 502 527 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF615-210 - 623 1.4e-129 417.3 125.1 17 20 4.6e-07 0.00043 20.6 0.3 3 23 532 552 531 555 0.90 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF615-210 - 623 1.4e-129 417.3 125.1 18 20 1e-11 9.7e-09 35.3 0.2 2 26 559 583 558 583 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF615-210 - 623 1.4e-129 417.3 125.1 19 20 2.9e-10 2.7e-07 30.7 0.3 1 26 586 611 586 611 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF615-210 - 623 1.4e-129 417.3 125.1 20 20 5.8 5.5e+03 -1.9 1.7 2 10 615 623 615 623 0.89 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZNF615-210 - 623 1.4e-91 296.2 144.1 1 19 3.8e-05 0.036 14.5 0.7 1 23 96 118 96 118 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF615-210 - 623 1.4e-91 296.2 144.1 2 19 4.8e-08 4.5e-05 23.7 2.9 1 23 124 146 124 146 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF615-210 - 623 1.4e-91 296.2 144.1 3 19 1.1e-06 0.0011 19.3 1.3 1 23 152 174 152 174 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF615-210 - 623 1.4e-91 296.2 144.1 4 19 1.2e-05 0.011 16.2 3.6 1 23 180 202 180 202 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF615-210 - 623 1.4e-91 296.2 144.1 5 19 2.3e-07 0.00022 21.5 1.6 3 23 210 230 210 230 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF615-210 - 623 1.4e-91 296.2 144.1 6 19 9.3e-06 0.0088 16.5 1.2 1 23 236 258 236 258 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF615-210 - 623 1.4e-91 296.2 144.1 7 19 1.9e-06 0.0018 18.7 0.6 1 23 264 286 264 286 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF615-210 - 623 1.4e-91 296.2 144.1 8 19 6.5e-07 0.00061 20.1 4.9 1 23 292 314 292 314 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF615-210 - 623 1.4e-91 296.2 144.1 9 19 1e-07 9.4e-05 22.7 0.4 1 23 320 342 320 342 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF615-210 - 623 1.4e-91 296.2 144.1 10 19 4.5e-08 4.2e-05 23.8 0.7 1 23 348 370 348 370 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF615-210 - 623 1.4e-91 296.2 144.1 11 19 3.2e-08 3e-05 24.2 0.3 1 23 376 398 376 398 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF615-210 - 623 1.4e-91 296.2 144.1 12 19 1.6e-06 0.0015 18.8 0.1 1 23 404 426 404 426 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF615-210 - 623 1.4e-91 296.2 144.1 13 19 1.5e-08 1.4e-05 25.3 1.6 1 23 432 454 432 454 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF615-210 - 623 1.4e-91 296.2 144.1 14 19 1.9e-07 0.00018 21.8 0.1 1 23 460 482 460 482 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF615-210 - 623 1.4e-91 296.2 144.1 15 19 2.4e-07 0.00023 21.4 0.4 1 23 488 510 488 510 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF615-210 - 623 1.4e-91 296.2 144.1 16 19 3e-06 0.0029 18.0 5.6 1 23 516 538 516 538 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF615-210 - 623 1.4e-91 296.2 144.1 17 19 0.00026 0.25 11.9 0.4 1 23 544 566 544 566 0.95 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF615-210 - 623 1.4e-91 296.2 144.1 18 19 2.6e-10 2.5e-07 30.8 0.9 1 23 572 594 572 594 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF615-210 - 623 1.4e-91 296.2 144.1 19 19 9.3e-06 0.0088 16.5 0.5 3 23 602 622 600 622 0.97 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZNF615-210 - 623 3.4e-59 192.3 134.4 1 19 0.00081 0.77 10.8 1.0 1 23 96 118 96 119 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF615-210 - 623 3.4e-59 192.3 134.4 2 19 7.2e-06 0.0068 17.2 2.1 1 23 124 146 124 147 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF615-210 - 623 3.4e-59 192.3 134.4 3 19 8.3e-06 0.0078 17.0 0.9 1 23 152 174 152 175 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF615-210 - 623 3.4e-59 192.3 134.4 4 19 7.6e-05 0.071 14.0 2.7 1 23 180 202 180 203 0.97 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF615-210 - 623 3.4e-59 192.3 134.4 5 19 5.2e-06 0.0049 17.6 2.1 3 23 210 230 208 231 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF615-210 - 623 3.4e-59 192.3 134.4 6 19 4.4e-05 0.041 14.7 0.8 1 23 236 258 236 259 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF615-210 - 623 3.4e-59 192.3 134.4 7 19 2.1e-05 0.02 15.7 0.4 1 23 264 286 264 287 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF615-210 - 623 3.4e-59 192.3 134.4 8 19 0.00011 0.11 13.4 4.0 1 23 292 314 292 315 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF615-210 - 623 3.4e-59 192.3 134.4 9 19 4.7e-06 0.0044 17.7 0.3 1 23 320 342 320 343 0.97 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF615-210 - 623 3.4e-59 192.3 134.4 10 19 2.5e-05 0.023 15.5 0.5 1 23 348 370 348 371 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF615-210 - 623 3.4e-59 192.3 134.4 11 19 1.9e-05 0.018 15.8 0.2 1 23 376 398 376 399 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF615-210 - 623 3.4e-59 192.3 134.4 12 19 0.00045 0.43 11.6 0.1 1 23 404 426 404 427 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF615-210 - 623 3.4e-59 192.3 134.4 13 19 3.7e-06 0.0035 18.0 1.0 1 23 432 454 432 455 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF615-210 - 623 3.4e-59 192.3 134.4 14 19 0.00015 0.14 13.1 0.1 1 23 460 482 460 483 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF615-210 - 623 3.4e-59 192.3 134.4 15 19 3.3e-05 0.032 15.1 0.3 1 23 488 510 488 511 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF615-210 - 623 3.4e-59 192.3 134.4 16 19 0.00037 0.35 11.8 4.2 1 23 516 538 516 539 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF615-210 - 623 3.4e-59 192.3 134.4 17 19 0.0011 1 10.4 0.3 1 23 544 566 544 567 0.91 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF615-210 - 623 3.4e-59 192.3 134.4 18 19 5.1e-07 0.00048 20.7 0.6 1 23 572 594 572 595 0.97 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF615-210 - 623 3.4e-59 192.3 134.4 19 19 0.006 5.6 8.1 0.5 2 23 601 622 600 623 0.90 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF615-210 - 623 1.9e-22 78.8 131.5 1 19 0.00097 0.91 9.6 0.2 1 11 95 105 95 108 0.91 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF615-210 - 623 1.9e-22 78.8 131.5 2 19 0.0013 1.2 9.2 1.5 2 24 124 146 124 148 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF615-210 - 623 1.9e-22 78.8 131.5 3 19 4.9e-05 0.046 13.7 1.9 1 25 151 175 151 177 0.92 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF615-210 - 623 1.9e-22 78.8 131.5 4 19 0.024 23 5.2 1.5 2 11 180 189 180 203 0.89 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF615-210 - 623 1.9e-22 78.8 131.5 5 19 6.8e-06 0.0064 16.5 3.4 2 24 208 230 208 233 0.95 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF615-210 - 623 1.9e-22 78.8 131.5 6 19 0.0039 3.7 7.7 0.3 2 11 236 245 236 260 0.84 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF615-210 - 623 1.9e-22 78.8 131.5 7 19 0.00099 0.94 9.6 0.6 2 24 264 286 264 289 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF615-210 - 623 1.9e-22 78.8 131.5 8 19 0.0033 3.1 7.9 3.5 2 24 292 314 291 317 0.87 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF615-210 - 623 1.9e-22 78.8 131.5 9 19 0.0033 3.1 7.9 0.2 2 11 320 329 320 343 0.88 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF615-210 - 623 1.9e-22 78.8 131.5 10 19 0.00056 0.53 10.4 0.2 2 25 348 371 348 373 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF615-210 - 623 1.9e-22 78.8 131.5 11 19 0.15 1.4e+02 2.7 0.2 2 12 376 386 376 399 0.86 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF615-210 - 623 1.9e-22 78.8 131.5 12 19 0.0015 1.4 9.0 0.1 2 24 404 426 404 429 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF615-210 - 623 1.9e-22 78.8 131.5 13 19 0.00069 0.65 10.1 1.2 2 24 432 454 432 457 0.92 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF615-210 - 623 1.9e-22 78.8 131.5 14 19 0.051 48 4.1 1.5 2 11 460 469 460 484 0.79 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF615-210 - 623 1.9e-22 78.8 131.5 15 19 0.0032 3 7.9 0.1 2 12 488 498 488 499 0.91 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF615-210 - 623 1.9e-22 78.8 131.5 16 19 0.0011 1.1 9.4 3.0 2 20 516 534 516 540 0.80 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF615-210 - 623 1.9e-22 78.8 131.5 17 19 0.13 1.3e+02 2.8 0.2 2 9 544 551 543 552 0.90 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF615-210 - 623 1.9e-22 78.8 131.5 18 19 0.0011 1 9.4 1.3 2 24 572 594 572 597 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF615-210 - 623 1.9e-22 78.8 131.5 19 19 0.017 16 5.7 0.5 2 25 600 623 600 623 0.91 C2H2-type zinc finger Zn-ribbon_8 PF09723.10 40 ZNF615-210 - 623 3.7e-17 62.1 83.7 1 14 0.0017 1.6 8.9 1.3 7 38 97 135 95 137 0.74 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF615-210 - 623 3.7e-17 62.1 83.7 2 14 0.0019 1.8 8.7 4.5 6 35 152 188 150 193 0.79 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF615-210 - 623 3.7e-17 62.1 83.7 3 14 0.081 76 3.5 7.4 6 35 180 216 178 250 0.66 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF615-210 - 623 3.7e-17 62.1 83.7 4 14 0.0058 5.5 7.2 1.2 6 34 236 271 235 277 0.79 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF615-210 - 623 3.7e-17 62.1 83.7 5 14 0.00084 0.79 9.9 1.3 6 34 264 299 263 304 0.80 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF615-210 - 623 3.7e-17 62.1 83.7 6 14 0.00031 0.29 11.3 4.2 6 34 292 327 291 332 0.92 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF615-210 - 623 3.7e-17 62.1 83.7 7 14 0.00037 0.35 11.0 2.6 6 34 320 355 319 360 0.89 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF615-210 - 623 3.7e-17 62.1 83.7 8 14 7.6e-05 0.072 13.2 1.2 6 34 348 383 346 388 0.91 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF615-210 - 623 3.7e-17 62.1 83.7 9 14 4e-05 0.038 14.1 0.8 6 34 376 411 375 417 0.90 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF615-210 - 623 3.7e-17 62.1 83.7 10 14 0.057 54 4.0 0.2 6 16 404 414 403 426 0.81 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF615-210 - 623 3.7e-17 62.1 83.7 11 14 7.2e-05 0.068 13.3 1.4 6 34 432 467 431 474 0.85 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF615-210 - 623 3.7e-17 62.1 83.7 12 14 0.0013 1.2 9.3 1.9 6 34 460 495 460 514 0.91 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF615-210 - 623 3.7e-17 62.1 83.7 13 14 0.00021 0.2 11.8 4.1 6 38 516 556 514 557 0.89 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF615-210 - 623 3.7e-17 62.1 83.7 14 14 1.2e-05 0.011 15.8 1.2 6 35 572 608 571 613 0.92 Zinc ribbon domain zinc_ribbon_9 PF14369.6 35 ZNF615-210 - 623 1.7e-13 50.6 51.8 1 18 0.054 51 4.2 0.0 20 32 93 106 82 108 0.74 zinc-ribbon zinc_ribbon_9 PF14369.6 35 ZNF615-210 - 623 1.7e-13 50.6 51.8 2 18 1.4 1.3e+03 -0.3 0.1 16 31 119 133 110 133 0.68 zinc-ribbon zinc_ribbon_9 PF14369.6 35 ZNF615-210 - 623 1.7e-13 50.6 51.8 3 18 0.5 4.7e+02 1.2 0.0 24 32 154 162 140 164 0.79 zinc-ribbon zinc_ribbon_9 PF14369.6 35 ZNF615-210 - 623 1.7e-13 50.6 51.8 4 18 0.078 74 3.7 0.0 23 32 181 190 167 192 0.79 zinc-ribbon zinc_ribbon_9 PF14369.6 35 ZNF615-210 - 623 1.7e-13 50.6 51.8 5 18 0.0012 1.1 9.5 0.2 22 33 235 247 222 249 0.75 zinc-ribbon zinc_ribbon_9 PF14369.6 35 ZNF615-210 - 623 1.7e-13 50.6 51.8 6 18 0.013 12 6.3 0.2 17 31 256 273 248 274 0.63 zinc-ribbon zinc_ribbon_9 PF14369.6 35 ZNF615-210 - 623 1.7e-13 50.6 51.8 7 18 0.051 48 4.3 0.1 20 31 288 301 280 301 0.72 zinc-ribbon zinc_ribbon_9 PF14369.6 35 ZNF615-210 - 623 1.7e-13 50.6 51.8 8 18 0.016 15 6.0 0.2 15 31 312 329 306 330 0.67 zinc-ribbon zinc_ribbon_9 PF14369.6 35 ZNF615-210 - 623 1.7e-13 50.6 51.8 9 18 0.043 41 4.6 0.0 18 31 345 357 336 359 0.69 zinc-ribbon zinc_ribbon_9 PF14369.6 35 ZNF615-210 - 623 1.7e-13 50.6 51.8 10 18 0.0046 4.3 7.7 0.0 15 31 368 385 362 387 0.71 zinc-ribbon zinc_ribbon_9 PF14369.6 35 ZNF615-210 - 623 1.7e-13 50.6 51.8 11 18 0.11 1e+02 3.3 0.0 19 31 400 413 390 413 0.66 zinc-ribbon zinc_ribbon_9 PF14369.6 35 ZNF615-210 - 623 1.7e-13 50.6 51.8 12 18 0.0016 1.5 9.2 0.1 22 33 431 443 422 444 0.71 zinc-ribbon zinc_ribbon_9 PF14369.6 35 ZNF615-210 - 623 1.7e-13 50.6 51.8 13 18 0.33 3.1e+02 1.7 0.0 12 30 449 468 446 469 0.65 zinc-ribbon zinc_ribbon_9 PF14369.6 35 ZNF615-210 - 623 1.7e-13 50.6 51.8 14 18 0.0081 7.7 6.9 0.0 22 31 487 497 476 499 0.70 zinc-ribbon zinc_ribbon_9 PF14369.6 35 ZNF615-210 - 623 1.7e-13 50.6 51.8 15 18 0.19 1.8e+02 2.5 0.1 22 31 515 525 502 525 0.64 zinc-ribbon zinc_ribbon_9 PF14369.6 35 ZNF615-210 - 623 1.7e-13 50.6 51.8 16 18 4.9 4.6e+03 -2.0 0.0 20 28 543 550 536 551 0.71 zinc-ribbon zinc_ribbon_9 PF14369.6 35 ZNF615-210 - 623 1.7e-13 50.6 51.8 17 18 0.49 4.6e+02 1.2 0.1 17 31 568 581 562 583 0.72 zinc-ribbon zinc_ribbon_9 PF14369.6 35 ZNF615-210 - 623 1.7e-13 50.6 51.8 18 18 1.8 1.7e+03 -0.7 0.1 23 31 601 609 588 612 0.72 zinc-ribbon zf_UBZ PF18439.1 32 ZNF615-210 - 623 1e-11 44.2 76.7 1 19 0.0058 5.5 6.7 0.1 3 15 96 108 94 115 0.76 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF615-210 - 623 1e-11 44.2 76.7 2 19 0.1 95 2.7 0.1 3 15 124 136 122 143 0.79 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF615-210 - 623 1e-11 44.2 76.7 3 19 0.0073 6.9 6.4 0.5 2 17 151 167 150 171 0.79 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF615-210 - 623 1e-11 44.2 76.7 4 19 0.013 13 5.5 1.3 3 12 180 189 178 194 0.88 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF615-210 - 623 1e-11 44.2 76.7 5 19 0.15 1.4e+02 2.2 0.0 5 21 210 227 208 227 0.90 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF615-210 - 623 1e-11 44.2 76.7 6 19 0.0054 5.1 6.8 0.1 3 15 236 248 234 255 0.78 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF615-210 - 623 1e-11 44.2 76.7 7 19 0.065 62 3.3 0.0 3 15 264 276 262 283 0.74 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF615-210 - 623 1e-11 44.2 76.7 8 19 0.0032 3 7.5 0.5 3 14 292 303 290 307 0.87 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF615-210 - 623 1e-11 44.2 76.7 9 19 0.071 67 3.2 0.1 3 12 320 329 318 333 0.85 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF615-210 - 623 1e-11 44.2 76.7 10 19 0.064 60 3.3 0.1 3 14 348 359 346 367 0.78 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF615-210 - 623 1e-11 44.2 76.7 11 19 0.064 60 3.4 0.1 3 13 376 386 374 391 0.82 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF615-210 - 623 1e-11 44.2 76.7 12 19 0.0065 6.1 6.5 0.0 3 15 404 416 402 423 0.82 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF615-210 - 623 1e-11 44.2 76.7 13 19 0.04 38 4.0 0.1 3 14 432 443 430 448 0.84 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF615-210 - 623 1e-11 44.2 76.7 14 19 0.011 10 5.8 0.0 3 11 460 468 458 479 0.84 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF615-210 - 623 1e-11 44.2 76.7 15 19 0.047 44 3.8 0.1 3 13 488 498 486 506 0.85 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF615-210 - 623 1e-11 44.2 76.7 16 19 0.14 1.3e+02 2.3 1.4 3 13 516 526 514 538 0.79 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF615-210 - 623 1e-11 44.2 76.7 17 19 0.021 20 4.9 0.1 2 20 543 562 542 563 0.75 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF615-210 - 623 1e-11 44.2 76.7 18 19 0.013 13 5.5 0.1 3 12 572 581 570 589 0.88 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF615-210 - 623 1e-11 44.2 76.7 19 19 0.054 51 3.6 0.0 3 13 600 610 599 615 0.83 Ubiquitin-Binding Zinc Finger DUF3268 PF11672.8 118 ZNF615-210 - 623 3.7e-10 40.1 59.8 1 14 3.2 3e+03 -1.5 0.0 18 37 82 102 77 114 0.71 zinc-finger-containing domain DUF3268 PF11672.8 118 ZNF615-210 - 623 3.7e-10 40.1 59.8 2 14 0.17 1.7e+02 2.6 0.3 3 38 96 131 94 149 0.77 zinc-finger-containing domain DUF3268 PF11672.8 118 ZNF615-210 - 623 3.7e-10 40.1 59.8 3 14 0.0089 8.4 6.8 0.9 2 38 123 159 122 175 0.71 zinc-finger-containing domain DUF3268 PF11672.8 118 ZNF615-210 - 623 3.7e-10 40.1 59.8 4 14 0.033 31 4.9 2.6 3 38 152 187 150 209 0.88 zinc-finger-containing domain DUF3268 PF11672.8 118 ZNF615-210 - 623 3.7e-10 40.1 59.8 5 14 0.039 37 4.7 1.8 2 38 179 215 178 222 0.83 zinc-finger-containing domain DUF3268 PF11672.8 118 ZNF615-210 - 623 3.7e-10 40.1 59.8 6 14 0.0042 4 7.8 0.7 3 37 208 242 206 253 0.90 zinc-finger-containing domain DUF3268 PF11672.8 118 ZNF615-210 - 623 3.7e-10 40.1 59.8 7 14 0.00078 0.74 10.2 0.9 3 38 264 299 262 315 0.86 zinc-finger-containing domain DUF3268 PF11672.8 118 ZNF615-210 - 623 3.7e-10 40.1 59.8 8 14 0.0059 5.5 7.3 0.3 2 37 319 354 318 370 0.81 zinc-finger-containing domain DUF3268 PF11672.8 118 ZNF615-210 - 623 3.7e-10 40.1 59.8 9 14 0.00073 0.69 10.2 0.2 2 37 375 410 374 425 0.89 zinc-finger-containing domain DUF3268 PF11672.8 118 ZNF615-210 - 623 3.7e-10 40.1 59.8 10 14 0.00059 0.56 10.5 0.4 2 37 431 466 430 482 0.92 zinc-finger-containing domain DUF3268 PF11672.8 118 ZNF615-210 - 623 3.7e-10 40.1 59.8 11 14 0.00013 0.13 12.6 1.3 2 39 487 524 486 532 0.91 zinc-finger-containing domain DUF3268 PF11672.8 118 ZNF615-210 - 623 3.7e-10 40.1 59.8 12 14 2 1.8e+03 -0.8 0.1 26 39 539 552 523 566 0.73 zinc-finger-containing domain DUF3268 PF11672.8 118 ZNF615-210 - 623 3.7e-10 40.1 59.8 13 14 0.0057 5.3 7.4 0.5 3 43 544 584 541 594 0.77 zinc-finger-containing domain DUF3268 PF11672.8 118 ZNF615-210 - 623 3.7e-10 40.1 59.8 14 14 0.00082 0.77 10.1 0.8 2 37 571 606 570 613 0.91 zinc-finger-containing domain zf-C2H2_jaz PF12171.8 27 ZNF615-210 - 623 1.6e-08 34.6 90.3 1 19 0.053 50 4.3 0.3 3 22 97 116 95 116 0.91 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF615-210 - 623 1.6e-08 34.6 90.3 2 19 0.0092 8.7 6.8 0.1 2 24 124 146 123 147 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF615-210 - 623 1.6e-08 34.6 90.3 3 19 7.7e-05 0.073 13.4 4.1 2 24 152 174 151 174 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF615-210 - 623 1.6e-08 34.6 90.3 4 19 1.7 1.6e+03 -0.5 1.8 2 14 180 192 179 208 0.76 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF615-210 - 623 1.6e-08 34.6 90.3 5 19 0.0013 1.3 9.4 0.4 4 24 210 230 207 230 0.95 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF615-210 - 623 1.6e-08 34.6 90.3 6 19 0.0067 6.3 7.2 0.1 2 20 236 254 235 258 0.88 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF615-210 - 623 1.6e-08 34.6 90.3 7 19 0.61 5.7e+02 1.0 0.2 2 23 264 285 263 286 0.86 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF615-210 - 623 1.6e-08 34.6 90.3 8 19 0.15 1.4e+02 2.9 1.3 2 23 292 313 291 314 0.84 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF615-210 - 623 1.6e-08 34.6 90.3 9 19 0.4 3.7e+02 1.6 0.1 2 12 320 330 319 342 0.84 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF615-210 - 623 1.6e-08 34.6 90.3 10 19 0.0014 1.3 9.4 0.0 2 24 348 370 347 370 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF615-210 - 623 1.6e-08 34.6 90.3 11 19 1.3 1.2e+03 -0.1 0.1 2 22 376 396 375 398 0.72 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF615-210 - 623 1.6e-08 34.6 90.3 12 19 0.89 8.4e+02 0.4 0.0 2 22 404 424 403 426 0.73 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF615-210 - 623 1.6e-08 34.6 90.3 13 19 0.012 11 6.4 0.2 2 24 432 454 431 454 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF615-210 - 623 1.6e-08 34.6 90.3 14 19 0.088 83 3.6 0.0 2 24 460 482 459 482 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF615-210 - 623 1.6e-08 34.6 90.3 15 19 0.028 26 5.2 0.1 2 23 488 509 487 510 0.89 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF615-210 - 623 1.6e-08 34.6 90.3 16 19 0.011 11 6.5 2.3 2 21 516 535 515 536 0.81 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF615-210 - 623 1.6e-08 34.6 90.3 17 19 0.13 1.2e+02 3.1 0.1 2 22 544 564 543 564 0.90 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF615-210 - 623 1.6e-08 34.6 90.3 18 19 0.099 94 3.5 0.2 2 22 572 592 571 594 0.90 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF615-210 - 623 1.6e-08 34.6 90.3 19 19 3.7 3.5e+03 -1.5 0.1 4 21 602 619 601 620 0.83 Zinc-finger double-stranded RNA-binding zinc_ribbon_15 PF17032.5 86 ZNF615-210 - 623 8.2e-08 32.9 73.2 1 10 0.19 1.8e+02 3.0 0.3 46 75 75 105 56 114 0.59 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF615-210 - 623 8.2e-08 32.9 73.2 2 10 0.00021 0.2 12.5 1.6 25 77 111 163 106 167 0.89 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF615-210 - 623 8.2e-08 32.9 73.2 3 10 0.11 1e+02 3.8 4.1 37 78 151 192 144 198 0.83 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF615-210 - 623 8.2e-08 32.9 73.2 4 10 0.025 24 5.8 5.9 32 75 202 245 180 254 0.83 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF615-210 - 623 8.2e-08 32.9 73.2 5 10 0.0023 2.2 9.1 1.7 34 75 260 301 253 308 0.84 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF615-210 - 623 8.2e-08 32.9 73.2 6 10 0.005 4.7 8.0 1.7 31 76 313 358 302 363 0.82 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF615-210 - 623 8.2e-08 32.9 73.2 7 10 0.009 8.5 7.2 0.2 34 78 372 416 363 422 0.83 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF615-210 - 623 8.2e-08 32.9 73.2 8 10 0.0029 2.7 8.8 0.8 35 76 429 470 423 475 0.83 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF615-210 - 623 8.2e-08 32.9 73.2 9 10 0.0023 2.2 9.1 2.3 32 77 482 527 470 529 0.83 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF615-210 - 623 8.2e-08 32.9 73.2 10 10 0.0055 5.2 7.9 4.8 23 77 529 583 524 613 0.80 zinc-ribbon family # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF615-210.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF615-210.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF615-210.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF615-210.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF615-210.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:11:00 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF615-211.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF615-211.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF615-211.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF615-211.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF615-211.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:11:01 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF615-212.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF615-212.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF615-212.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF615-212.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF615-212.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:11:01 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZNF615-213 - 731 4.7e-128 412.5 125.1 1 20 0.00013 0.13 12.8 0.1 7 25 196 214 195 215 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF615-213 - 731 4.7e-128 412.5 125.1 2 20 1.3e-09 1.3e-06 28.6 0.7 5 25 222 242 219 243 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF615-213 - 731 4.7e-128 412.5 125.1 3 20 1.8e-07 0.00018 21.8 2.6 2 25 247 270 246 271 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF615-213 - 731 4.7e-128 412.5 125.1 4 20 7.3e-09 7.3e-06 26.2 0.2 2 24 275 297 274 299 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF615-213 - 731 4.7e-128 412.5 125.1 5 20 3.9e-10 3.9e-07 30.2 0.8 2 26 303 327 302 327 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF615-213 - 731 4.7e-128 412.5 125.1 6 20 7.1e-09 7e-06 26.2 0.3 1 24 330 353 330 354 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF615-213 - 731 4.7e-128 412.5 125.1 7 20 1.4e-07 0.00014 22.1 1.9 2 25 359 382 358 382 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF615-213 - 731 4.7e-128 412.5 125.1 8 20 8.2e-09 8.2e-06 26.0 0.2 2 25 387 410 386 410 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF615-213 - 731 4.7e-128 412.5 125.1 9 20 1.8e-10 1.7e-07 31.3 0.4 2 25 415 438 415 438 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF615-213 - 731 4.7e-128 412.5 125.1 10 20 1.3e-10 1.2e-07 31.8 1.0 2 25 443 466 443 466 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF615-213 - 731 4.7e-128 412.5 125.1 11 20 1.3e-06 0.0013 19.0 0.1 2 25 471 494 470 494 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF615-213 - 731 4.7e-128 412.5 125.1 12 20 8e-09 8e-06 26.1 0.2 4 24 501 521 498 522 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF615-213 - 731 4.7e-128 412.5 125.1 13 20 2.1e-08 2e-05 24.8 0.2 2 25 527 550 526 551 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF615-213 - 731 4.7e-128 412.5 125.1 14 20 1.1e-09 1.1e-06 28.8 1.0 1 22 554 575 554 578 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF615-213 - 731 4.7e-128 412.5 125.1 15 20 1.8e-08 1.8e-05 24.9 0.1 2 25 583 606 582 606 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF615-213 - 731 4.7e-128 412.5 125.1 16 20 5.7e-10 5.6e-07 29.7 1.4 2 25 611 634 610 635 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF615-213 - 731 4.7e-128 412.5 125.1 17 20 5.2e-07 0.00052 20.3 0.3 3 23 640 660 639 663 0.90 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF615-213 - 731 4.7e-128 412.5 125.1 18 20 1.2e-11 1.2e-08 35.0 0.2 2 26 667 691 666 691 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF615-213 - 731 4.7e-128 412.5 125.1 19 20 3.3e-10 3.3e-07 30.4 0.3 1 26 694 719 694 719 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF615-213 - 731 4.7e-128 412.5 125.1 20 20 6.6 6.6e+03 -2.1 1.6 2 10 723 731 723 731 0.89 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZNF615-213 - 731 3.7e-90 291.6 144.1 1 19 4.4e-05 0.044 14.3 0.7 1 23 204 226 204 226 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF615-213 - 731 3.7e-90 291.6 144.1 2 19 5.5e-08 5.5e-05 23.4 2.9 1 23 232 254 232 254 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF615-213 - 731 3.7e-90 291.6 144.1 3 19 1.3e-06 0.0013 19.1 1.3 1 23 260 282 260 282 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF615-213 - 731 3.7e-90 291.6 144.1 4 19 1.3e-05 0.013 15.9 3.6 1 23 288 310 288 310 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF615-213 - 731 3.7e-90 291.6 144.1 5 19 2.7e-07 0.00027 21.2 1.6 3 23 318 338 318 338 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF615-213 - 731 3.7e-90 291.6 144.1 6 19 1.1e-05 0.011 16.2 1.2 1 23 344 366 344 366 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF615-213 - 731 3.7e-90 291.6 144.1 7 19 2.1e-06 0.0021 18.4 0.6 1 23 372 394 372 394 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF615-213 - 731 3.7e-90 291.6 144.1 8 19 7.4e-07 0.00074 19.8 4.9 1 23 400 422 400 422 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF615-213 - 731 3.7e-90 291.6 144.1 9 19 1.1e-07 0.00011 22.4 0.4 1 23 428 450 428 450 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF615-213 - 731 3.7e-90 291.6 144.1 10 19 5.1e-08 5.1e-05 23.5 0.7 1 23 456 478 456 478 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF615-213 - 731 3.7e-90 291.6 144.1 11 19 3.6e-08 3.6e-05 24.0 0.3 1 23 484 506 484 506 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF615-213 - 731 3.7e-90 291.6 144.1 12 19 1.9e-06 0.0018 18.6 0.1 1 23 512 534 512 534 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF615-213 - 731 3.7e-90 291.6 144.1 13 19 1.7e-08 1.7e-05 25.0 1.6 1 23 540 562 540 562 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF615-213 - 731 3.7e-90 291.6 144.1 14 19 2.2e-07 0.00022 21.5 0.1 1 23 568 590 568 590 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF615-213 - 731 3.7e-90 291.6 144.1 15 19 2.8e-07 0.00028 21.2 0.4 1 23 596 618 596 618 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF615-213 - 731 3.7e-90 291.6 144.1 16 19 3.5e-06 0.0034 17.7 5.6 1 23 624 646 624 646 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF615-213 - 731 3.7e-90 291.6 144.1 17 19 0.0003 0.3 11.6 0.4 1 23 652 674 652 674 0.95 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF615-213 - 731 3.7e-90 291.6 144.1 18 19 3e-10 3e-07 30.5 0.9 1 23 680 702 680 702 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF615-213 - 731 3.7e-90 291.6 144.1 19 19 1.1e-05 0.011 16.2 0.5 3 23 710 730 708 730 0.97 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZNF615-213 - 731 3.9e-57 185.9 137.1 1 20 9.7 9.6e+03 -2.0 0.0 14 22 86 94 76 95 0.68 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF615-213 - 731 3.9e-57 185.9 137.1 2 20 0.00093 0.92 10.5 1.0 1 23 204 226 204 227 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF615-213 - 731 3.9e-57 185.9 137.1 3 20 8.2e-06 0.0082 16.9 2.1 1 23 232 254 232 255 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF615-213 - 731 3.9e-57 185.9 137.1 4 20 9.5e-06 0.0094 16.7 0.9 1 23 260 282 260 283 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF615-213 - 731 3.9e-57 185.9 137.1 5 20 8.6e-05 0.086 13.7 2.7 1 23 288 310 288 311 0.97 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF615-213 - 731 3.9e-57 185.9 137.1 6 20 5.9e-06 0.0059 17.3 2.1 3 23 318 338 316 339 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF615-213 - 731 3.9e-57 185.9 137.1 7 20 5e-05 0.05 14.5 0.8 1 23 344 366 344 367 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF615-213 - 731 3.9e-57 185.9 137.1 8 20 2.4e-05 0.024 15.4 0.4 1 23 372 394 372 395 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF615-213 - 731 3.9e-57 185.9 137.1 9 20 0.00013 0.13 13.2 4.0 1 23 400 422 400 423 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF615-213 - 731 3.9e-57 185.9 137.1 10 20 5.3e-06 0.0053 17.5 0.3 1 23 428 450 428 451 0.97 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF615-213 - 731 3.9e-57 185.9 137.1 11 20 2.8e-05 0.028 15.2 0.5 1 23 456 478 456 479 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF615-213 - 731 3.9e-57 185.9 137.1 12 20 2.2e-05 0.022 15.6 0.2 1 23 484 506 484 507 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF615-213 - 731 3.9e-57 185.9 137.1 13 20 0.00052 0.52 11.3 0.1 1 23 512 534 512 535 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF615-213 - 731 3.9e-57 185.9 137.1 14 20 4.3e-06 0.0043 17.8 1.0 1 23 540 562 540 563 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF615-213 - 731 3.9e-57 185.9 137.1 15 20 0.00017 0.17 12.8 0.1 1 23 568 590 568 591 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF615-213 - 731 3.9e-57 185.9 137.1 16 20 3.8e-05 0.038 14.8 0.3 1 23 596 618 596 619 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF615-213 - 731 3.9e-57 185.9 137.1 17 20 0.00043 0.42 11.6 4.2 1 23 624 646 624 647 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF615-213 - 731 3.9e-57 185.9 137.1 18 20 0.0012 1.2 10.1 0.3 1 23 652 674 652 675 0.91 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF615-213 - 731 3.9e-57 185.9 137.1 19 20 5.8e-07 0.00058 20.5 0.6 1 23 680 702 680 703 0.97 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF615-213 - 731 3.9e-57 185.9 137.1 20 20 0.0068 6.8 7.8 0.5 2 23 709 730 708 731 0.90 C2H2-type zinc finger KRAB PF01352.27 42 ZNF615-213 - 731 7.5e-24 83.1 0.7 1 1 1.3e-26 1.3e-23 82.3 0.7 1 42 7 48 7 48 0.98 KRAB box zf-C2H2_6 PF13912.6 27 ZNF615-213 - 731 2.9e-22 78.1 127.4 1 19 0.0011 1.1 9.4 0.2 1 11 203 213 203 216 0.91 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF615-213 - 731 2.9e-22 78.1 127.4 2 19 0.0015 1.5 8.9 1.5 2 24 232 254 232 256 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF615-213 - 731 2.9e-22 78.1 127.4 3 19 7.7e-05 0.077 13.0 2.2 1 25 259 283 259 284 0.91 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF615-213 - 731 2.9e-22 78.1 127.4 4 19 0.027 27 4.9 1.5 2 11 288 297 288 311 0.89 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF615-213 - 731 2.9e-22 78.1 127.4 5 19 7.7e-06 0.0077 16.2 3.4 2 24 316 338 316 341 0.95 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF615-213 - 731 2.9e-22 78.1 127.4 6 19 0.0044 4.4 7.4 0.3 2 11 344 353 344 368 0.84 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF615-213 - 731 2.9e-22 78.1 127.4 7 19 0.0011 1.1 9.3 0.6 2 24 372 394 372 397 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF615-213 - 731 2.9e-22 78.1 127.4 8 19 0.0037 3.7 7.7 3.5 2 24 400 422 399 425 0.87 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF615-213 - 731 2.9e-22 78.1 127.4 9 19 0.0038 3.7 7.6 0.2 2 11 428 437 428 451 0.88 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF615-213 - 731 2.9e-22 78.1 127.4 10 19 0.00064 0.64 10.1 0.2 2 25 456 479 456 481 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF615-213 - 731 2.9e-22 78.1 127.4 11 19 0.17 1.6e+02 2.4 0.2 2 12 484 494 484 507 0.86 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF615-213 - 731 2.9e-22 78.1 127.4 12 19 0.0017 1.7 8.7 0.1 2 24 512 534 512 537 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF615-213 - 731 2.9e-22 78.1 127.4 13 19 0.00079 0.78 9.8 1.2 2 24 540 562 540 565 0.92 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF615-213 - 731 2.9e-22 78.1 127.4 14 19 0.021 21 5.3 0.1 2 11 568 577 568 592 0.79 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF615-213 - 731 2.9e-22 78.1 127.4 15 19 0.0036 3.6 7.7 0.1 2 12 596 606 596 607 0.91 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF615-213 - 731 2.9e-22 78.1 127.4 16 19 0.0013 1.3 9.1 3.0 2 20 624 642 624 648 0.80 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF615-213 - 731 2.9e-22 78.1 127.4 17 19 0.15 1.5e+02 2.5 0.2 2 9 652 659 651 660 0.90 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF615-213 - 731 2.9e-22 78.1 127.4 18 19 0.0012 1.2 9.2 1.3 2 24 680 702 680 705 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF615-213 - 731 2.9e-22 78.1 127.4 19 19 0.019 19 5.4 0.5 2 25 708 731 708 731 0.91 C2H2-type zinc finger Zn-ribbon_8 PF09723.10 40 ZNF615-213 - 731 2.2e-16 59.7 83.2 1 14 0.0017 1.7 8.8 1.1 7 38 205 243 203 245 0.74 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF615-213 - 731 2.2e-16 59.7 83.2 2 14 0.0026 2.6 8.2 4.7 6 35 260 296 259 301 0.79 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF615-213 - 731 2.2e-16 59.7 83.2 3 14 0.089 88 3.3 7.3 6 35 288 324 287 358 0.65 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF615-213 - 731 2.2e-16 59.7 83.2 4 14 0.011 11 6.2 1.7 6 34 344 379 343 382 0.79 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF615-213 - 731 2.2e-16 59.7 83.2 5 14 0.0011 1.1 9.5 1.3 6 34 372 407 370 411 0.80 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF615-213 - 731 2.2e-16 59.7 83.2 6 14 0.00029 0.29 11.3 3.9 6 34 400 435 399 442 0.92 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF615-213 - 731 2.2e-16 59.7 83.2 7 14 0.00037 0.37 10.9 2.5 6 34 428 463 427 469 0.89 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF615-213 - 731 2.2e-16 59.7 83.2 8 14 5.6e-05 0.055 13.6 0.7 6 34 456 491 455 499 0.90 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF615-213 - 731 2.2e-16 59.7 83.2 9 14 3.6e-05 0.036 14.2 0.5 6 34 484 519 483 527 0.90 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF615-213 - 731 2.2e-16 59.7 83.2 10 14 0.062 62 3.8 0.1 6 16 512 522 510 534 0.82 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF615-213 - 731 2.2e-16 59.7 83.2 11 14 9.5e-05 0.095 12.8 1.6 6 34 540 575 539 582 0.85 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF615-213 - 731 2.2e-16 59.7 83.2 12 14 0.00061 0.61 10.2 3.9 6 38 596 635 595 636 0.88 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF615-213 - 731 2.2e-16 59.7 83.2 13 14 0.00027 0.27 11.4 4.3 6 38 624 664 622 665 0.89 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF615-213 - 731 2.2e-16 59.7 83.2 14 14 1.5e-05 0.015 15.4 1.2 6 35 680 716 679 720 0.92 Zinc ribbon domain zinc_ribbon_9 PF14369.6 35 ZNF615-213 - 731 4.2e-12 46.1 52.3 1 18 0.062 62 4.0 0.0 20 32 201 214 190 216 0.74 zinc-ribbon zinc_ribbon_9 PF14369.6 35 ZNF615-213 - 731 4.2e-12 46.1 52.3 2 18 1.6 1.6e+03 -0.5 0.1 16 31 227 241 218 241 0.68 zinc-ribbon zinc_ribbon_9 PF14369.6 35 ZNF615-213 - 731 4.2e-12 46.1 52.3 3 18 0.57 5.6e+02 0.9 0.0 24 32 262 270 248 272 0.79 zinc-ribbon zinc_ribbon_9 PF14369.6 35 ZNF615-213 - 731 4.2e-12 46.1 52.3 4 18 0.089 88 3.5 0.0 23 32 289 298 275 300 0.79 zinc-ribbon zinc_ribbon_9 PF14369.6 35 ZNF615-213 - 731 4.2e-12 46.1 52.3 5 18 0.0014 1.4 9.3 0.2 22 33 343 355 330 357 0.75 zinc-ribbon zinc_ribbon_9 PF14369.6 35 ZNF615-213 - 731 4.2e-12 46.1 52.3 6 18 0.014 14 6.0 0.1 17 31 364 381 356 382 0.63 zinc-ribbon zinc_ribbon_9 PF14369.6 35 ZNF615-213 - 731 4.2e-12 46.1 52.3 7 18 0.058 57 4.1 0.1 20 31 396 409 388 409 0.72 zinc-ribbon zinc_ribbon_9 PF14369.6 35 ZNF615-213 - 731 4.2e-12 46.1 52.3 8 18 0.018 18 5.7 0.2 15 31 420 437 414 438 0.67 zinc-ribbon zinc_ribbon_9 PF14369.6 35 ZNF615-213 - 731 4.2e-12 46.1 52.3 9 18 0.049 49 4.3 0.0 18 31 453 465 444 467 0.69 zinc-ribbon zinc_ribbon_9 PF14369.6 35 ZNF615-213 - 731 4.2e-12 46.1 52.3 10 18 0.0052 5.2 7.4 0.0 15 31 476 493 470 495 0.71 zinc-ribbon zinc_ribbon_9 PF14369.6 35 ZNF615-213 - 731 4.2e-12 46.1 52.3 11 18 0.12 1.2e+02 3.0 0.0 20 31 509 521 498 521 0.66 zinc-ribbon zinc_ribbon_9 PF14369.6 35 ZNF615-213 - 731 4.2e-12 46.1 52.3 12 18 0.0018 1.8 8.9 0.1 22 33 539 551 530 552 0.71 zinc-ribbon zinc_ribbon_9 PF14369.6 35 ZNF615-213 - 731 4.2e-12 46.1 52.3 13 18 0.37 3.7e+02 1.5 0.0 12 30 557 576 554 577 0.65 zinc-ribbon zinc_ribbon_9 PF14369.6 35 ZNF615-213 - 731 4.2e-12 46.1 52.3 14 18 0.0092 9.2 6.6 0.0 22 31 595 605 584 607 0.70 zinc-ribbon zinc_ribbon_9 PF14369.6 35 ZNF615-213 - 731 4.2e-12 46.1 52.3 15 18 0.22 2.2e+02 2.2 0.1 22 31 623 633 610 633 0.64 zinc-ribbon zinc_ribbon_9 PF14369.6 35 ZNF615-213 - 731 4.2e-12 46.1 52.3 16 18 5.5 5.5e+03 -2.3 0.0 20 28 651 658 644 659 0.71 zinc-ribbon zinc_ribbon_9 PF14369.6 35 ZNF615-213 - 731 4.2e-12 46.1 52.3 17 18 0.55 5.5e+02 0.9 0.1 17 31 676 689 670 691 0.72 zinc-ribbon zinc_ribbon_9 PF14369.6 35 ZNF615-213 - 731 4.2e-12 46.1 52.3 18 18 2.4 2.4e+03 -1.1 0.1 23 31 709 717 696 719 0.72 zinc-ribbon zf_UBZ PF18439.1 32 ZNF615-213 - 731 2.8e-10 39.6 77.0 1 19 0.0066 6.5 6.4 0.1 3 15 204 216 202 223 0.76 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF615-213 - 731 2.8e-10 39.6 77.0 2 19 0.11 1.1e+02 2.5 0.1 3 15 232 244 230 251 0.79 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF615-213 - 731 2.8e-10 39.6 77.0 3 19 0.0083 8.2 6.1 0.5 2 17 259 275 258 279 0.79 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF615-213 - 731 2.8e-10 39.6 77.0 4 19 0.015 15 5.3 1.3 3 12 288 297 286 302 0.88 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF615-213 - 731 2.8e-10 39.6 77.0 5 19 0.16 1.6e+02 2.0 0.0 5 21 318 335 316 335 0.90 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF615-213 - 731 2.8e-10 39.6 77.0 6 19 0.0061 6 6.5 0.1 3 15 344 356 342 363 0.78 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF615-213 - 731 2.8e-10 39.6 77.0 7 19 0.074 74 3.1 0.0 3 15 372 384 370 391 0.74 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF615-213 - 731 2.8e-10 39.6 77.0 8 19 0.0036 3.6 7.3 0.5 3 14 400 411 398 415 0.87 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF615-213 - 731 2.8e-10 39.6 77.0 9 19 0.08 80 3.0 0.1 3 12 428 437 426 441 0.85 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF615-213 - 731 2.8e-10 39.6 77.0 10 19 0.072 72 3.1 0.1 3 14 456 467 454 475 0.78 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF615-213 - 731 2.8e-10 39.6 77.0 11 19 0.072 71 3.1 0.1 3 13 484 494 482 499 0.82 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF615-213 - 731 2.8e-10 39.6 77.0 12 19 0.0074 7.4 6.3 0.0 3 15 512 524 510 531 0.82 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF615-213 - 731 2.8e-10 39.6 77.0 13 19 0.045 45 3.7 0.1 3 14 540 551 538 556 0.84 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF615-213 - 731 2.8e-10 39.6 77.0 14 19 0.012 12 5.6 0.0 3 11 568 576 566 587 0.85 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF615-213 - 731 2.8e-10 39.6 77.0 15 19 0.053 53 3.5 0.1 3 13 596 606 594 614 0.85 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF615-213 - 731 2.8e-10 39.6 77.0 16 19 0.16 1.6e+02 2.0 1.4 3 13 624 634 622 646 0.79 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF615-213 - 731 2.8e-10 39.6 77.0 17 19 0.024 24 4.6 0.1 2 20 651 670 650 671 0.75 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF615-213 - 731 2.8e-10 39.6 77.0 18 19 0.015 15 5.2 0.1 3 12 680 689 678 696 0.87 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF615-213 - 731 2.8e-10 39.6 77.0 19 19 0.061 61 3.3 0.0 3 13 708 718 707 723 0.83 Ubiquitin-Binding Zinc Finger DUF3268 PF11672.8 118 ZNF615-213 - 731 1.7e-09 38.0 59.6 1 14 3.5 3.5e+03 -1.7 0.0 19 37 191 210 186 230 0.72 zinc-finger-containing domain DUF3268 PF11672.8 118 ZNF615-213 - 731 1.7e-09 38.0 59.6 2 14 0.2 2e+02 2.3 0.3 3 38 204 239 202 257 0.77 zinc-finger-containing domain DUF3268 PF11672.8 118 ZNF615-213 - 731 1.7e-09 38.0 59.6 3 14 0.009 9 6.7 0.8 2 39 231 268 230 284 0.71 zinc-finger-containing domain DUF3268 PF11672.8 118 ZNF615-213 - 731 1.7e-09 38.0 59.6 4 14 0.042 41 4.5 2.5 3 37 260 294 258 309 0.89 zinc-finger-containing domain DUF3268 PF11672.8 118 ZNF615-213 - 731 1.7e-09 38.0 59.6 5 14 0.054 54 4.2 1.9 2 38 287 323 286 328 0.83 zinc-finger-containing domain DUF3268 PF11672.8 118 ZNF615-213 - 731 1.7e-09 38.0 59.6 6 14 0.0049 4.9 7.5 0.6 3 37 316 350 314 360 0.90 zinc-finger-containing domain DUF3268 PF11672.8 118 ZNF615-213 - 731 1.7e-09 38.0 59.6 7 14 0.00093 0.92 9.8 0.9 3 38 372 407 370 422 0.86 zinc-finger-containing domain DUF3268 PF11672.8 118 ZNF615-213 - 731 1.7e-09 38.0 59.6 8 14 0.0068 6.7 7.1 0.3 2 37 427 462 426 478 0.81 zinc-finger-containing domain DUF3268 PF11672.8 118 ZNF615-213 - 731 1.7e-09 38.0 59.6 9 14 0.00086 0.86 10.0 0.2 2 37 483 518 482 532 0.89 zinc-finger-containing domain DUF3268 PF11672.8 118 ZNF615-213 - 731 1.7e-09 38.0 59.6 10 14 0.00069 0.68 10.3 0.4 2 37 539 574 538 589 0.92 zinc-finger-containing domain DUF3268 PF11672.8 118 ZNF615-213 - 731 1.7e-09 38.0 59.6 11 14 0.00015 0.15 12.4 1.3 2 39 595 632 594 640 0.91 zinc-finger-containing domain DUF3268 PF11672.8 118 ZNF615-213 - 731 1.7e-09 38.0 59.6 12 14 2.3 2.3e+03 -1.1 0.1 26 39 647 660 631 672 0.73 zinc-finger-containing domain DUF3268 PF11672.8 118 ZNF615-213 - 731 1.7e-09 38.0 59.6 13 14 0.0089 8.9 6.7 0.4 3 39 652 688 649 695 0.77 zinc-finger-containing domain DUF3268 PF11672.8 118 ZNF615-213 - 731 1.7e-09 38.0 59.6 14 14 0.00097 0.96 9.8 0.9 2 37 679 714 677 721 0.92 zinc-finger-containing domain zf-C2H2_jaz PF12171.8 27 ZNF615-213 - 731 9.3e-07 29.0 91.6 1 19 0.06 60 4.1 0.3 3 22 205 224 203 224 0.91 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF615-213 - 731 9.3e-07 29.0 91.6 2 19 0.01 10 6.5 0.1 2 24 232 254 231 255 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF615-213 - 731 9.3e-07 29.0 91.6 3 19 8.8e-05 0.088 13.1 4.1 2 24 260 282 259 282 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF615-213 - 731 9.3e-07 29.0 91.6 4 19 2 2e+03 -0.7 1.8 2 14 288 300 287 316 0.76 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF615-213 - 731 9.3e-07 29.0 91.6 5 19 0.0015 1.5 9.2 0.4 4 24 318 338 315 338 0.95 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF615-213 - 731 9.3e-07 29.0 91.6 6 19 0.0077 7.6 6.9 0.1 2 20 344 362 343 366 0.88 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF615-213 - 731 9.3e-07 29.0 91.6 7 19 0.69 6.9e+02 0.7 0.2 2 23 372 393 371 394 0.86 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF615-213 - 731 9.3e-07 29.0 91.6 8 19 0.17 1.7e+02 2.7 1.3 2 23 400 421 399 422 0.84 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF615-213 - 731 9.3e-07 29.0 91.6 9 19 0.45 4.5e+02 1.3 0.1 2 12 428 438 427 450 0.84 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF615-213 - 731 9.3e-07 29.0 91.6 10 19 0.0016 1.6 9.1 0.0 2 24 456 478 455 478 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF615-213 - 731 9.3e-07 29.0 91.6 11 19 1.5 1.5e+03 -0.4 0.1 2 22 484 504 483 506 0.72 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF615-213 - 731 9.3e-07 29.0 91.6 12 19 1 1e+03 0.2 0.0 2 22 512 532 511 534 0.72 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF615-213 - 731 9.3e-07 29.0 91.6 13 19 0.014 14 6.1 0.2 2 24 540 562 539 562 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF615-213 - 731 9.3e-07 29.0 91.6 14 19 0.1 1e+02 3.4 0.0 2 24 568 590 567 590 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF615-213 - 731 9.3e-07 29.0 91.6 15 19 0.032 32 5.0 0.1 2 23 596 617 595 618 0.89 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF615-213 - 731 9.3e-07 29.0 91.6 16 19 0.013 13 6.3 2.3 2 21 624 643 623 644 0.81 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF615-213 - 731 9.3e-07 29.0 91.6 17 19 0.15 1.5e+02 2.8 0.1 2 22 652 672 651 672 0.90 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF615-213 - 731 9.3e-07 29.0 91.6 18 19 0.11 1.1e+02 3.2 0.2 2 22 680 700 679 702 0.90 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF615-213 - 731 9.3e-07 29.0 91.6 19 19 4.6 4.5e+03 -1.9 0.1 4 21 710 727 710 728 0.82 Zinc-finger double-stranded RNA-binding # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF615-213.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF615-213.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF615-213.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF615-213.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF615-213.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:11:01 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZNF615-214 - 740 6.2e-128 412.1 125.1 1 20 0.00014 0.13 12.7 0.1 7 25 205 223 204 224 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF615-214 - 740 6.2e-128 412.1 125.1 2 20 1.4e-09 1.3e-06 28.6 0.7 5 25 231 251 228 252 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF615-214 - 740 6.2e-128 412.1 125.1 3 20 1.9e-07 0.00018 21.8 2.6 2 25 256 279 255 280 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF615-214 - 740 6.2e-128 412.1 125.1 4 20 7.8e-09 7.4e-06 26.2 0.2 2 24 284 306 283 308 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF615-214 - 740 6.2e-128 412.1 125.1 5 20 4.2e-10 3.9e-07 30.2 0.8 2 26 312 336 311 336 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF615-214 - 740 6.2e-128 412.1 125.1 6 20 7.6e-09 7.1e-06 26.2 0.3 1 24 339 362 339 363 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF615-214 - 740 6.2e-128 412.1 125.1 7 20 1.5e-07 0.00014 22.1 1.9 2 25 368 391 367 391 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF615-214 - 740 6.2e-128 412.1 125.1 8 20 8.8e-09 8.3e-06 26.0 0.2 2 25 396 419 395 419 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF615-214 - 740 6.2e-128 412.1 125.1 9 20 1.9e-10 1.8e-07 31.3 0.4 2 25 424 447 424 447 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF615-214 - 740 6.2e-128 412.1 125.1 10 20 1.3e-10 1.3e-07 31.7 1.0 2 25 452 475 452 475 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF615-214 - 740 6.2e-128 412.1 125.1 11 20 1.4e-06 0.0014 19.0 0.1 2 25 480 503 479 503 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF615-214 - 740 6.2e-128 412.1 125.1 12 20 8.6e-09 8.1e-06 26.0 0.2 4 24 510 530 507 531 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF615-214 - 740 6.2e-128 412.1 125.1 13 20 2.2e-08 2.1e-05 24.7 0.2 2 25 536 559 535 560 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF615-214 - 740 6.2e-128 412.1 125.1 14 20 1.1e-09 1.1e-06 28.8 1.0 1 22 563 584 563 587 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF615-214 - 740 6.2e-128 412.1 125.1 15 20 2e-08 1.9e-05 24.9 0.1 2 25 592 615 591 615 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF615-214 - 740 6.2e-128 412.1 125.1 16 20 6.1e-10 5.7e-07 29.7 1.4 2 25 620 643 619 644 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF615-214 - 740 6.2e-128 412.1 125.1 17 20 5.6e-07 0.00052 20.3 0.3 3 23 649 669 648 672 0.90 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF615-214 - 740 6.2e-128 412.1 125.1 18 20 1.3e-11 1.2e-08 35.0 0.2 2 26 676 700 675 700 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF615-214 - 740 6.2e-128 412.1 125.1 19 20 3.5e-10 3.3e-07 30.4 0.3 1 26 703 728 703 728 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF615-214 - 740 6.2e-128 412.1 125.1 20 20 7 6.6e+03 -2.1 1.6 2 10 732 740 732 740 0.89 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZNF615-214 - 740 5e-90 291.2 144.1 1 19 4.7e-05 0.044 14.2 0.7 1 23 213 235 213 235 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF615-214 - 740 5e-90 291.2 144.1 2 19 5.9e-08 5.5e-05 23.4 2.9 1 23 241 263 241 263 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF615-214 - 740 5e-90 291.2 144.1 3 19 1.4e-06 0.0013 19.0 1.3 1 23 269 291 269 291 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF615-214 - 740 5e-90 291.2 144.1 4 19 1.4e-05 0.013 15.9 3.6 1 23 297 319 297 319 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF615-214 - 740 5e-90 291.2 144.1 5 19 2.9e-07 0.00027 21.2 1.6 3 23 327 347 327 347 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF615-214 - 740 5e-90 291.2 144.1 6 19 1.1e-05 0.011 16.2 1.2 1 23 353 375 353 375 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF615-214 - 740 5e-90 291.2 144.1 7 19 2.3e-06 0.0021 18.4 0.6 1 23 381 403 381 403 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF615-214 - 740 5e-90 291.2 144.1 8 19 7.9e-07 0.00075 19.8 4.9 1 23 409 431 409 431 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF615-214 - 740 5e-90 291.2 144.1 9 19 1.2e-07 0.00012 22.4 0.4 1 23 437 459 437 459 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF615-214 - 740 5e-90 291.2 144.1 10 19 5.5e-08 5.2e-05 23.5 0.7 1 23 465 487 465 487 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF615-214 - 740 5e-90 291.2 144.1 11 19 3.9e-08 3.7e-05 24.0 0.3 1 23 493 515 493 515 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF615-214 - 740 5e-90 291.2 144.1 12 19 2e-06 0.0019 18.6 0.1 1 23 521 543 521 543 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF615-214 - 740 5e-90 291.2 144.1 13 19 1.8e-08 1.7e-05 25.0 1.6 1 23 549 571 549 571 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF615-214 - 740 5e-90 291.2 144.1 14 19 2.3e-07 0.00022 21.5 0.1 1 23 577 599 577 599 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF615-214 - 740 5e-90 291.2 144.1 15 19 3e-07 0.00028 21.2 0.4 1 23 605 627 605 627 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF615-214 - 740 5e-90 291.2 144.1 16 19 3.7e-06 0.0035 17.7 5.6 1 23 633 655 633 655 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF615-214 - 740 5e-90 291.2 144.1 17 19 0.00032 0.3 11.6 0.4 1 23 661 683 661 683 0.95 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF615-214 - 740 5e-90 291.2 144.1 18 19 3.2e-10 3e-07 30.5 0.9 1 23 689 711 689 711 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF615-214 - 740 5e-90 291.2 144.1 19 19 1.1e-05 0.011 16.2 0.5 3 23 719 739 717 739 0.97 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZNF615-214 - 740 1e-56 184.6 137.7 1 19 0.00099 0.94 10.5 1.0 1 23 213 235 213 236 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF615-214 - 740 1e-56 184.6 137.7 2 19 8.8e-06 0.0083 16.9 2.1 1 23 241 263 241 264 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF615-214 - 740 1e-56 184.6 137.7 3 19 1e-05 0.0096 16.7 0.9 1 23 269 291 269 292 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF615-214 - 740 1e-56 184.6 137.7 4 19 9.3e-05 0.087 13.7 2.7 1 23 297 319 297 320 0.97 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF615-214 - 740 1e-56 184.6 137.7 5 19 6.4e-06 0.006 17.3 2.1 3 23 327 347 325 348 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF615-214 - 740 1e-56 184.6 137.7 6 19 5.4e-05 0.051 14.4 0.8 1 23 353 375 353 376 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF615-214 - 740 1e-56 184.6 137.7 7 19 2.6e-05 0.025 15.4 0.4 1 23 381 403 381 404 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF615-214 - 740 1e-56 184.6 137.7 8 19 0.00014 0.13 13.1 4.0 1 23 409 431 409 432 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF615-214 - 740 1e-56 184.6 137.7 9 19 5.7e-06 0.0054 17.5 0.3 1 23 437 459 437 460 0.97 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF615-214 - 740 1e-56 184.6 137.7 10 19 3e-05 0.029 15.2 0.5 1 23 465 487 465 488 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF615-214 - 740 1e-56 184.6 137.7 11 19 2.3e-05 0.022 15.6 0.2 1 23 493 515 493 516 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF615-214 - 740 1e-56 184.6 137.7 12 19 0.00056 0.52 11.3 0.1 1 23 521 543 521 544 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF615-214 - 740 1e-56 184.6 137.7 13 19 4.6e-06 0.0043 17.8 1.0 1 23 549 571 549 572 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF615-214 - 740 1e-56 184.6 137.7 14 19 0.00018 0.17 12.8 0.1 1 23 577 599 577 600 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF615-214 - 740 1e-56 184.6 137.7 15 19 4.1e-05 0.039 14.8 0.3 1 23 605 627 605 628 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF615-214 - 740 1e-56 184.6 137.7 16 19 0.00046 0.43 11.5 4.2 1 23 633 655 633 656 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF615-214 - 740 1e-56 184.6 137.7 17 19 0.0013 1.2 10.1 0.3 1 23 661 683 661 684 0.91 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF615-214 - 740 1e-56 184.6 137.7 18 19 6.2e-07 0.00059 20.5 0.6 1 23 689 711 689 712 0.97 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF615-214 - 740 1e-56 184.6 137.7 19 19 0.0073 6.9 7.8 0.5 2 23 718 739 717 740 0.90 C2H2-type zinc finger KRAB PF01352.27 42 ZNF615-214 - 740 7.6e-24 83.1 0.7 1 1 1.4e-26 1.3e-23 82.3 0.7 1 42 7 48 7 48 0.98 KRAB box zf-C2H2_6 PF13912.6 27 ZNF615-214 - 740 3.9e-22 77.7 127.4 1 19 0.0012 1.1 9.3 0.2 1 11 212 222 212 225 0.91 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF615-214 - 740 3.9e-22 77.7 127.4 2 19 0.0016 1.5 8.9 1.5 2 24 241 263 241 265 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF615-214 - 740 3.9e-22 77.7 127.4 3 19 8.3e-05 0.078 13.0 2.2 1 25 268 292 268 293 0.91 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF615-214 - 740 3.9e-22 77.7 127.4 4 19 0.029 27 4.9 1.5 2 11 297 306 297 320 0.89 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF615-214 - 740 3.9e-22 77.7 127.4 5 19 8.3e-06 0.0078 16.2 3.4 2 24 325 347 325 350 0.95 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF615-214 - 740 3.9e-22 77.7 127.4 6 19 0.0047 4.4 7.4 0.3 2 11 353 362 353 377 0.84 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF615-214 - 740 3.9e-22 77.7 127.4 7 19 0.0012 1.1 9.3 0.6 2 24 381 403 381 406 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF615-214 - 740 3.9e-22 77.7 127.4 8 19 0.004 3.7 7.6 3.5 2 24 409 431 408 434 0.87 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF615-214 - 740 3.9e-22 77.7 127.4 9 19 0.004 3.8 7.6 0.2 2 11 437 446 437 460 0.88 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF615-214 - 740 3.9e-22 77.7 127.4 10 19 0.00068 0.64 10.1 0.2 2 25 465 488 465 490 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF615-214 - 740 3.9e-22 77.7 127.4 11 19 0.18 1.7e+02 2.4 0.2 2 12 493 503 493 516 0.86 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF615-214 - 740 3.9e-22 77.7 127.4 12 19 0.0018 1.7 8.7 0.1 2 24 521 543 521 546 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF615-214 - 740 3.9e-22 77.7 127.4 13 19 0.00084 0.8 9.8 1.2 2 24 549 571 549 574 0.92 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF615-214 - 740 3.9e-22 77.7 127.4 14 19 0.022 21 5.3 0.1 2 11 577 586 577 601 0.79 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF615-214 - 740 3.9e-22 77.7 127.4 15 19 0.0039 3.6 7.7 0.1 2 12 605 615 605 616 0.91 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF615-214 - 740 3.9e-22 77.7 127.4 16 19 0.0014 1.3 9.1 3.0 2 20 633 651 633 657 0.80 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF615-214 - 740 3.9e-22 77.7 127.4 17 19 0.16 1.5e+02 2.5 0.2 2 9 661 668 660 669 0.90 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF615-214 - 740 3.9e-22 77.7 127.4 18 19 0.0013 1.2 9.2 1.3 2 24 689 711 689 714 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF615-214 - 740 3.9e-22 77.7 127.4 19 19 0.02 19 5.4 0.5 2 25 717 740 717 740 0.91 C2H2-type zinc finger Zn-ribbon_8 PF09723.10 40 ZNF615-214 - 740 2e-16 59.8 82.8 1 14 0.0019 1.8 8.8 1.1 7 38 214 252 212 254 0.74 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF615-214 - 740 2e-16 59.8 82.8 2 14 0.0025 2.3 8.4 4.5 6 35 269 305 268 310 0.79 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF615-214 - 740 2e-16 59.8 82.8 3 14 0.084 79 3.5 7.1 6 35 297 333 296 367 0.65 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF615-214 - 740 2e-16 59.8 82.8 4 14 0.0072 6.8 6.9 1.2 6 34 353 388 352 393 0.79 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF615-214 - 740 2e-16 59.8 82.8 5 14 0.0014 1.3 9.2 1.6 6 34 381 416 380 419 0.80 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF615-214 - 740 2e-16 59.8 82.8 6 14 0.00038 0.36 11.0 4.2 6 34 409 444 408 451 0.92 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF615-214 - 740 2e-16 59.8 82.8 7 14 0.00044 0.41 10.8 2.6 6 34 437 472 436 478 0.89 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF615-214 - 740 2e-16 59.8 82.8 8 14 5.7e-05 0.054 13.6 0.7 6 34 465 500 463 508 0.90 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF615-214 - 740 2e-16 59.8 82.8 9 14 3.8e-05 0.036 14.2 0.5 6 34 493 528 492 536 0.90 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF615-214 - 740 2e-16 59.8 82.8 10 14 0.066 62 3.8 0.1 6 16 521 531 519 543 0.82 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF615-214 - 740 2e-16 59.8 82.8 11 14 9.5e-05 0.089 12.9 1.5 6 34 549 584 548 591 0.85 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF615-214 - 740 2e-16 59.8 82.8 12 14 0.0006 0.57 10.4 3.8 6 38 605 644 604 645 0.88 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF615-214 - 740 2e-16 59.8 82.8 13 14 0.0003 0.29 11.3 4.4 6 38 633 673 632 674 0.89 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF615-214 - 740 2e-16 59.8 82.8 14 14 1.6e-05 0.015 15.4 1.2 6 35 689 725 688 729 0.92 Zinc ribbon domain zinc_ribbon_9 PF14369.6 35 ZNF615-214 - 740 5.2e-12 45.8 52.3 1 18 0.066 62 4.0 0.0 20 32 210 223 199 225 0.74 zinc-ribbon zinc_ribbon_9 PF14369.6 35 ZNF615-214 - 740 5.2e-12 45.8 52.3 2 18 1.7 1.6e+03 -0.6 0.1 16 31 236 250 227 250 0.68 zinc-ribbon zinc_ribbon_9 PF14369.6 35 ZNF615-214 - 740 5.2e-12 45.8 52.3 3 18 0.6 5.7e+02 0.9 0.0 24 32 271 279 257 281 0.79 zinc-ribbon zinc_ribbon_9 PF14369.6 35 ZNF615-214 - 740 5.2e-12 45.8 52.3 4 18 0.095 90 3.5 0.0 23 32 298 307 284 309 0.79 zinc-ribbon zinc_ribbon_9 PF14369.6 35 ZNF615-214 - 740 5.2e-12 45.8 52.3 5 18 0.0015 1.4 9.3 0.2 22 33 352 364 339 366 0.75 zinc-ribbon zinc_ribbon_9 PF14369.6 35 ZNF615-214 - 740 5.2e-12 45.8 52.3 6 18 0.015 15 6.0 0.1 17 31 373 390 365 391 0.63 zinc-ribbon zinc_ribbon_9 PF14369.6 35 ZNF615-214 - 740 5.2e-12 45.8 52.3 7 18 0.062 58 4.1 0.1 20 31 405 418 397 418 0.72 zinc-ribbon zinc_ribbon_9 PF14369.6 35 ZNF615-214 - 740 5.2e-12 45.8 52.3 8 18 0.019 18 5.7 0.2 15 31 429 446 423 447 0.67 zinc-ribbon zinc_ribbon_9 PF14369.6 35 ZNF615-214 - 740 5.2e-12 45.8 52.3 9 18 0.052 49 4.3 0.0 18 31 462 474 453 476 0.69 zinc-ribbon zinc_ribbon_9 PF14369.6 35 ZNF615-214 - 740 5.2e-12 45.8 52.3 10 18 0.0056 5.3 7.4 0.0 15 31 485 502 479 504 0.71 zinc-ribbon zinc_ribbon_9 PF14369.6 35 ZNF615-214 - 740 5.2e-12 45.8 52.3 11 18 0.13 1.3e+02 3.0 0.0 20 31 518 530 507 530 0.66 zinc-ribbon zinc_ribbon_9 PF14369.6 35 ZNF615-214 - 740 5.2e-12 45.8 52.3 12 18 0.0019 1.8 8.9 0.1 22 33 548 560 539 561 0.71 zinc-ribbon zinc_ribbon_9 PF14369.6 35 ZNF615-214 - 740 5.2e-12 45.8 52.3 13 18 0.4 3.8e+02 1.5 0.0 12 30 566 585 563 586 0.65 zinc-ribbon zinc_ribbon_9 PF14369.6 35 ZNF615-214 - 740 5.2e-12 45.8 52.3 14 18 0.0099 9.3 6.6 0.0 22 31 604 614 593 616 0.70 zinc-ribbon zinc_ribbon_9 PF14369.6 35 ZNF615-214 - 740 5.2e-12 45.8 52.3 15 18 0.23 2.2e+02 2.2 0.1 22 31 632 642 619 642 0.64 zinc-ribbon zinc_ribbon_9 PF14369.6 35 ZNF615-214 - 740 5.2e-12 45.8 52.3 16 18 5.9 5.6e+03 -2.3 0.0 20 28 660 667 653 668 0.71 zinc-ribbon zinc_ribbon_9 PF14369.6 35 ZNF615-214 - 740 5.2e-12 45.8 52.3 17 18 0.59 5.6e+02 0.9 0.1 17 31 685 698 679 700 0.72 zinc-ribbon zinc_ribbon_9 PF14369.6 35 ZNF615-214 - 740 5.2e-12 45.8 52.3 18 18 2.6 2.4e+03 -1.1 0.1 23 31 718 726 705 728 0.72 zinc-ribbon zf_UBZ PF18439.1 32 ZNF615-214 - 740 3.6e-10 39.3 77.0 1 19 0.007 6.6 6.4 0.1 3 15 213 225 211 232 0.76 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF615-214 - 740 3.6e-10 39.3 77.0 2 19 0.12 1.1e+02 2.5 0.1 3 15 241 253 239 260 0.79 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF615-214 - 740 3.6e-10 39.3 77.0 3 19 0.0088 8.3 6.1 0.5 2 17 268 284 267 288 0.79 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF615-214 - 740 3.6e-10 39.3 77.0 4 19 0.016 15 5.2 1.3 3 12 297 306 295 311 0.88 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF615-214 - 740 3.6e-10 39.3 77.0 5 19 0.18 1.7e+02 1.9 0.0 5 21 327 344 325 344 0.90 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF615-214 - 740 3.6e-10 39.3 77.0 6 19 0.0065 6.1 6.5 0.1 3 15 353 365 351 372 0.78 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF615-214 - 740 3.6e-10 39.3 77.0 7 19 0.079 75 3.0 0.0 3 15 381 393 379 400 0.74 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF615-214 - 740 3.6e-10 39.3 77.0 8 19 0.0038 3.6 7.2 0.5 3 14 409 420 407 424 0.87 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF615-214 - 740 3.6e-10 39.3 77.0 9 19 0.085 81 2.9 0.1 3 12 437 446 435 450 0.85 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF615-214 - 740 3.6e-10 39.3 77.0 10 19 0.077 73 3.1 0.1 3 14 465 476 463 484 0.78 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF615-214 - 740 3.6e-10 39.3 77.0 11 19 0.077 72 3.1 0.1 3 13 493 503 491 508 0.82 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF615-214 - 740 3.6e-10 39.3 77.0 12 19 0.0079 7.5 6.3 0.0 3 15 521 533 519 540 0.82 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF615-214 - 740 3.6e-10 39.3 77.0 13 19 0.049 46 3.7 0.1 3 14 549 560 547 565 0.84 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF615-214 - 740 3.6e-10 39.3 77.0 14 19 0.013 12 5.5 0.0 3 11 577 585 575 596 0.85 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF615-214 - 740 3.6e-10 39.3 77.0 15 19 0.057 54 3.5 0.1 3 13 605 615 603 623 0.85 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF615-214 - 740 3.6e-10 39.3 77.0 16 19 0.17 1.6e+02 2.0 1.4 3 13 633 643 631 655 0.79 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF615-214 - 740 3.6e-10 39.3 77.0 17 19 0.025 24 4.6 0.1 2 20 660 679 659 680 0.75 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF615-214 - 740 3.6e-10 39.3 77.0 18 19 0.017 16 5.2 0.1 3 12 689 698 687 705 0.87 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF615-214 - 740 3.6e-10 39.3 77.0 19 19 0.065 62 3.3 0.0 3 13 717 727 716 732 0.83 Ubiquitin-Binding Zinc Finger DUF3268 PF11672.8 118 ZNF615-214 - 740 2.1e-09 37.7 59.7 1 14 4.2 4e+03 -1.9 0.0 19 37 200 219 195 230 0.70 zinc-finger-containing domain DUF3268 PF11672.8 118 ZNF615-214 - 740 2.1e-09 37.7 59.7 2 14 0.25 2.3e+02 2.1 0.3 3 38 213 248 211 259 0.76 zinc-finger-containing domain DUF3268 PF11672.8 118 ZNF615-214 - 740 2.1e-09 37.7 59.7 3 14 0.01 9.5 6.6 0.8 2 39 240 277 239 293 0.71 zinc-finger-containing domain DUF3268 PF11672.8 118 ZNF615-214 - 740 2.1e-09 37.7 59.7 4 14 0.052 49 4.3 2.8 3 37 269 303 267 320 0.88 zinc-finger-containing domain DUF3268 PF11672.8 118 ZNF615-214 - 740 2.1e-09 37.7 59.7 5 14 0.066 62 3.9 1.9 2 37 296 331 295 336 0.84 zinc-finger-containing domain DUF3268 PF11672.8 118 ZNF615-214 - 740 2.1e-09 37.7 59.7 6 14 0.0053 5 7.5 0.6 3 37 325 359 323 369 0.90 zinc-finger-containing domain DUF3268 PF11672.8 118 ZNF615-214 - 740 2.1e-09 37.7 59.7 7 14 0.00099 0.94 9.8 0.9 3 38 381 416 379 431 0.86 zinc-finger-containing domain DUF3268 PF11672.8 118 ZNF615-214 - 740 2.1e-09 37.7 59.7 8 14 0.0072 6.8 7.0 0.3 2 37 436 471 435 487 0.81 zinc-finger-containing domain DUF3268 PF11672.8 118 ZNF615-214 - 740 2.1e-09 37.7 59.7 9 14 0.00092 0.87 9.9 0.2 2 37 492 527 491 541 0.89 zinc-finger-containing domain DUF3268 PF11672.8 118 ZNF615-214 - 740 2.1e-09 37.7 59.7 10 14 0.00074 0.69 10.2 0.4 2 37 548 583 547 598 0.92 zinc-finger-containing domain DUF3268 PF11672.8 118 ZNF615-214 - 740 2.1e-09 37.7 59.7 11 14 0.00016 0.15 12.4 1.3 2 39 604 641 603 649 0.91 zinc-finger-containing domain DUF3268 PF11672.8 118 ZNF615-214 - 740 2.1e-09 37.7 59.7 12 14 2.5 2.3e+03 -1.1 0.1 26 39 656 669 640 681 0.73 zinc-finger-containing domain DUF3268 PF11672.8 118 ZNF615-214 - 740 2.1e-09 37.7 59.7 13 14 0.0095 9 6.7 0.4 3 39 661 697 658 704 0.77 zinc-finger-containing domain DUF3268 PF11672.8 118 ZNF615-214 - 740 2.1e-09 37.7 59.7 14 14 0.001 0.97 9.8 0.9 2 37 688 723 686 730 0.92 zinc-finger-containing domain zinc_ribbon_15 PF17032.5 86 ZNF615-214 - 740 4.7e-07 30.5 73.0 1 9 0.25 2.3e+02 2.6 0.3 47 75 193 222 173 229 0.58 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF615-214 - 740 4.7e-07 30.5 73.0 2 9 0.012 12 6.8 7.3 25 77 228 280 221 312 0.91 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF615-214 - 740 4.7e-07 30.5 73.0 3 9 0.037 35 5.2 6.0 32 75 319 362 297 368 0.82 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF615-214 - 740 4.7e-07 30.5 73.0 4 9 0.003 2.8 8.7 1.8 34 75 377 418 369 425 0.85 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF615-214 - 740 4.7e-07 30.5 73.0 5 9 0.0053 5 8.0 1.5 31 76 430 475 418 480 0.82 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF615-214 - 740 4.7e-07 30.5 73.0 6 9 0.011 10 6.9 0.2 34 78 489 533 480 539 0.83 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF615-214 - 740 4.7e-07 30.5 73.0 7 9 0.0033 3.2 8.6 0.8 35 76 546 587 538 595 0.84 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF615-214 - 740 4.7e-07 30.5 73.0 8 9 0.0051 4.8 8.0 3.3 32 77 599 644 589 648 0.83 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF615-214 - 740 4.7e-07 30.5 73.0 9 9 0.007 6.6 7.6 4.7 23 77 646 700 643 730 0.79 zinc-ribbon family # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF615-214.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF615-214.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF615-214.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF615-214.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF615-214.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:11:02 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF615-215.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF615-215.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF615-215.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF615-215.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF615-215.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:11:02 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF616-201.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF616-201.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF616-201.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF616-201.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF616-201.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:11:03 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- KRAB PF01352.27 42 ZNF616-202 - 69 1.5e-26 91.7 0.1 1 1 1.1e-30 2e-26 91.4 0.1 2 42 7 47 6 47 0.98 KRAB box # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF616-202.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF616-202.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF616-202.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF616-202.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF616-202.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:11:03 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- KRAB PF01352.27 42 ZNF616-203 - 74 1.9e-26 91.4 0.1 1 1 1.3e-30 2.4e-26 91.1 0.1 2 42 7 47 6 47 0.98 KRAB box # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF616-203.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF616-203.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF616-203.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF616-203.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF616-203.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:11:03 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZNF616-204 - 781 1.3e-145 468.0 163.8 1 22 0.00048 0.43 11.1 0.4 9 25 179 195 177 196 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF616-204 - 781 1.3e-145 468.0 163.8 2 22 6.5e-09 5.8e-06 26.5 1.6 2 24 200 222 199 224 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF616-204 - 781 1.3e-145 468.0 163.8 3 22 6.9e-05 0.062 13.8 0.4 2 24 228 250 228 252 0.87 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF616-204 - 781 1.3e-145 468.0 163.8 4 22 3.1e-09 2.8e-06 27.5 1.3 2 25 256 279 255 280 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF616-204 - 781 1.3e-145 468.0 163.8 5 22 4.7e-11 4.2e-08 33.3 0.8 1 25 283 307 283 308 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF616-204 - 781 1.3e-145 468.0 163.8 6 22 7.9e-10 7.1e-07 29.4 2.8 1 26 311 336 311 336 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF616-204 - 781 1.3e-145 468.0 163.8 7 22 1.7e-08 1.6e-05 25.1 0.6 1 26 339 364 339 364 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF616-204 - 781 1.3e-145 468.0 163.8 8 22 6.7e-08 6e-05 23.3 1.8 2 25 368 391 367 392 0.90 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF616-204 - 781 1.3e-145 468.0 163.8 9 22 2.3e-07 0.0002 21.6 1.6 2 25 396 419 395 420 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF616-204 - 781 1.3e-145 468.0 163.8 10 22 1.9e-08 1.7e-05 25.0 0.7 2 25 424 447 423 448 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF616-204 - 781 1.3e-145 468.0 163.8 11 22 1.2e-07 0.00011 22.5 0.4 2 25 452 475 451 475 0.89 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF616-204 - 781 1.3e-145 468.0 163.8 12 22 7.4e-11 6.6e-08 32.6 0.2 2 25 480 503 479 504 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF616-204 - 781 1.3e-145 468.0 163.8 13 22 1.4e-10 1.3e-07 31.7 0.6 2 25 508 531 507 532 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF616-204 - 781 1.3e-145 468.0 163.8 14 22 1.4e-11 1.2e-08 35.0 1.2 2 25 536 559 535 560 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF616-204 - 781 1.3e-145 468.0 163.8 15 22 4.2e-09 3.8e-06 27.1 0.5 2 25 564 587 563 588 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF616-204 - 781 1.3e-145 468.0 163.8 16 22 1.2e-10 1.1e-07 32.0 2.7 1 25 591 615 591 616 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF616-204 - 781 1.3e-145 468.0 163.8 17 22 3.9e-11 3.5e-08 33.5 0.4 2 25 620 643 619 644 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF616-204 - 781 1.3e-145 468.0 163.8 18 22 1.7e-09 1.6e-06 28.3 2.4 1 26 647 672 647 672 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF616-204 - 781 1.3e-145 468.0 163.8 19 22 2.7e-09 2.4e-06 27.7 0.6 1 26 675 700 675 700 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF616-204 - 781 1.3e-145 468.0 163.8 20 22 4.3e-11 3.9e-08 33.4 0.6 1 25 703 727 703 728 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF616-204 - 781 1.3e-145 468.0 163.8 21 22 4.6e-10 4.1e-07 30.1 2.4 1 24 731 754 731 756 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF616-204 - 781 1.3e-145 468.0 163.8 22 22 0.045 41 4.9 0.2 1 13 759 771 759 773 0.91 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZNF616-204 - 781 3.6e-119 383.0 182.9 1 21 3.1e-09 2.8e-06 27.5 0.1 1 23 185 207 185 207 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF616-204 - 781 3.6e-119 383.0 182.9 2 21 2.9e-07 0.00026 21.3 0.8 1 23 213 235 213 235 0.95 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF616-204 - 781 3.6e-119 383.0 182.9 3 21 4.7e-08 4.2e-05 23.8 1.8 1 23 241 263 241 263 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF616-204 - 781 3.6e-119 383.0 182.9 4 21 2e-09 1.8e-06 28.1 1.1 1 23 269 291 269 291 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF616-204 - 781 3.6e-119 383.0 182.9 5 21 1.5e-07 0.00013 22.2 2.7 1 23 297 319 297 319 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF616-204 - 781 3.6e-119 383.0 182.9 6 21 9.5e-10 8.5e-07 29.1 0.9 1 23 325 347 325 347 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF616-204 - 781 3.6e-119 383.0 182.9 7 21 2.4e-06 0.0021 18.4 4.4 1 23 353 375 353 375 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF616-204 - 781 3.6e-119 383.0 182.9 8 21 4e-09 3.6e-06 27.1 0.7 1 23 381 403 381 403 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF616-204 - 781 3.6e-119 383.0 182.9 9 21 2.3e-08 2.1e-05 24.7 1.8 2 23 410 431 409 431 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF616-204 - 781 3.6e-119 383.0 182.9 10 21 1.8e-07 0.00016 21.9 3.4 1 23 437 459 437 459 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF616-204 - 781 3.6e-119 383.0 182.9 11 21 3.6e-07 0.00032 21.0 0.8 1 23 465 487 465 487 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF616-204 - 781 3.6e-119 383.0 182.9 12 21 4.7e-08 4.2e-05 23.8 1.7 1 23 493 515 493 515 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF616-204 - 781 3.6e-119 383.0 182.9 13 21 6e-09 5.4e-06 26.6 0.9 1 23 521 543 521 543 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF616-204 - 781 3.6e-119 383.0 182.9 14 21 6.5e-08 5.8e-05 23.3 3.4 1 23 549 571 549 571 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF616-204 - 781 3.6e-119 383.0 182.9 15 21 1.2e-07 0.00011 22.5 1.8 1 23 577 599 577 599 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF616-204 - 781 3.6e-119 383.0 182.9 16 21 1.1e-08 1e-05 25.7 1.6 1 23 605 627 605 627 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF616-204 - 781 3.6e-119 383.0 182.9 17 21 3.2e-06 0.0028 18.0 2.6 1 23 633 655 633 655 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF616-204 - 781 3.6e-119 383.0 182.9 18 21 3.4e-10 3e-07 30.5 0.6 1 23 661 683 661 683 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF616-204 - 781 3.6e-119 383.0 182.9 19 21 2.7e-09 2.4e-06 27.7 3.7 1 23 689 711 689 711 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF616-204 - 781 3.6e-119 383.0 182.9 20 21 6.4e-06 0.0058 17.0 0.5 1 23 717 739 717 739 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF616-204 - 781 3.6e-119 383.0 182.9 21 21 5.8e-06 0.0052 17.2 3.0 1 23 745 767 745 767 0.98 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZNF616-204 - 781 4.8e-61 198.1 171.4 1 21 5.4e-05 0.048 14.5 0.2 1 23 185 207 185 208 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF616-204 - 781 4.8e-61 198.1 171.4 2 21 0.00097 0.87 10.6 0.9 1 23 213 235 213 236 0.90 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF616-204 - 781 4.8e-61 198.1 171.4 3 21 2.7e-05 0.024 15.4 1.2 1 23 241 263 241 264 0.90 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF616-204 - 781 4.8e-61 198.1 171.4 4 21 2.5e-05 0.022 15.5 1.1 1 23 269 291 269 292 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF616-204 - 781 4.8e-61 198.1 171.4 5 21 8.8e-05 0.079 13.8 2.2 1 23 297 319 297 320 0.91 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF616-204 - 781 4.8e-61 198.1 171.4 6 21 2e-05 0.018 15.8 0.5 1 23 325 347 325 348 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF616-204 - 781 4.8e-61 198.1 171.4 7 21 0.0014 1.3 10.1 3.6 1 23 353 375 353 376 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF616-204 - 781 4.8e-61 198.1 171.4 8 21 1.4e-05 0.012 16.4 0.7 1 23 381 403 381 404 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF616-204 - 781 4.8e-61 198.1 171.4 9 21 0.00012 0.11 13.4 1.9 2 23 410 431 409 432 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF616-204 - 781 4.8e-61 198.1 171.4 10 21 9.3e-05 0.084 13.8 3.2 1 23 437 459 437 460 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF616-204 - 781 4.8e-61 198.1 171.4 11 21 8.9e-05 0.08 13.8 0.7 1 23 465 487 465 488 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF616-204 - 781 4.8e-61 198.1 171.4 12 21 2.9e-05 0.026 15.4 1.4 1 23 493 515 493 516 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF616-204 - 781 4.8e-61 198.1 171.4 13 21 1.3e-06 0.0012 19.5 0.8 1 23 521 543 521 544 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF616-204 - 781 4.8e-61 198.1 171.4 14 21 1.1e-05 0.01 16.6 3.2 1 23 549 571 549 572 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF616-204 - 781 4.8e-61 198.1 171.4 15 21 3.6e-05 0.032 15.0 1.5 1 23 577 599 577 600 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF616-204 - 781 4.8e-61 198.1 171.4 16 21 2.9e-05 0.026 15.3 1.0 1 23 605 627 605 628 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF616-204 - 781 4.8e-61 198.1 171.4 17 21 0.00032 0.29 12.1 1.9 1 23 633 655 633 656 0.91 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF616-204 - 781 4.8e-61 198.1 171.4 18 21 1.1e-05 0.0095 16.7 0.3 1 23 661 683 661 684 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF616-204 - 781 4.8e-61 198.1 171.4 19 21 0.00014 0.13 13.2 3.0 1 23 689 711 689 712 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF616-204 - 781 4.8e-61 198.1 171.4 20 21 7.9e-05 0.071 14.0 0.5 1 23 717 739 717 740 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF616-204 - 781 4.8e-61 198.1 171.4 21 21 1.3e-05 0.011 16.4 2.1 1 23 745 767 745 768 0.97 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF616-204 - 781 1.7e-37 126.7 150.3 1 21 0.00078 0.7 10.0 0.3 2 21 185 204 184 209 0.81 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF616-204 - 781 1.7e-37 126.7 150.3 2 21 0.0012 1 9.4 0.4 2 13 213 224 213 232 0.89 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF616-204 - 781 1.7e-37 126.7 150.3 3 21 0.0067 6 7.0 0.3 2 12 241 251 240 252 0.88 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF616-204 - 781 1.7e-37 126.7 150.3 4 21 0.0005 0.45 10.6 0.8 2 12 269 279 269 284 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF616-204 - 781 1.7e-37 126.7 150.3 5 21 0.0014 1.2 9.2 0.3 2 12 297 307 297 318 0.91 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF616-204 - 781 1.7e-37 126.7 150.3 6 21 0.00026 0.23 11.5 0.8 2 18 325 341 325 344 0.82 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF616-204 - 781 1.7e-37 126.7 150.3 7 21 0.0011 0.97 9.5 1.9 2 22 353 373 353 378 0.76 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF616-204 - 781 1.7e-37 126.7 150.3 8 21 5.8e-05 0.052 13.6 0.7 2 23 381 402 380 404 0.86 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF616-204 - 781 1.7e-37 126.7 150.3 9 21 0.0015 1.3 9.1 0.4 3 13 410 420 410 431 0.81 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF616-204 - 781 1.7e-37 126.7 150.3 10 21 0.013 12 6.0 1.8 2 12 437 447 436 449 0.90 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF616-204 - 781 1.7e-37 126.7 150.3 11 21 0.00022 0.2 11.7 0.4 1 12 464 475 464 476 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF616-204 - 781 1.7e-37 126.7 150.3 12 21 0.00041 0.37 10.9 0.2 2 12 493 503 493 514 0.95 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF616-204 - 781 1.7e-37 126.7 150.3 13 21 0.00049 0.44 10.6 1.2 2 12 521 531 521 532 0.95 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF616-204 - 781 1.7e-37 126.7 150.3 14 21 0.00034 0.31 11.1 2.4 2 24 549 571 549 574 0.79 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF616-204 - 781 1.7e-37 126.7 150.3 15 21 1.1e-05 0.01 15.8 2.1 2 24 577 599 577 602 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF616-204 - 781 1.7e-37 126.7 150.3 16 21 0.00046 0.41 10.7 1.5 2 22 605 625 605 629 0.87 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF616-204 - 781 1.7e-37 126.7 150.3 17 21 0.0027 2.5 8.2 0.4 2 12 633 643 633 653 0.90 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF616-204 - 781 1.7e-37 126.7 150.3 18 21 1.9e-05 0.017 15.1 0.5 2 21 661 680 661 684 0.91 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF616-204 - 781 1.7e-37 126.7 150.3 19 21 0.00027 0.25 11.4 0.8 2 12 689 699 689 707 0.95 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF616-204 - 781 1.7e-37 126.7 150.3 20 21 0.00034 0.3 11.1 1.0 1 24 716 739 716 742 0.90 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF616-204 - 781 1.7e-37 126.7 150.3 21 21 0.00048 0.43 10.6 2.1 2 24 745 767 745 770 0.88 C2H2-type zinc finger Zn-ribbon_8 PF09723.10 40 ZNF616-204 - 781 2.5e-33 113.9 98.6 1 16 3.6e-06 0.0032 17.5 1.3 6 38 185 224 184 226 0.89 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF616-204 - 781 2.5e-33 113.9 98.6 2 16 2.8e-05 0.026 14.7 0.8 6 37 241 279 240 282 0.88 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF616-204 - 781 2.5e-33 113.9 98.6 3 16 9.8e-05 0.088 12.9 2.3 6 38 297 336 296 337 0.86 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF616-204 - 781 2.5e-33 113.9 98.6 4 16 3e-05 0.027 14.6 1.0 6 37 325 363 324 366 0.88 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF616-204 - 781 2.5e-33 113.9 98.6 5 16 8.9e-06 0.008 16.3 3.8 5 34 380 416 380 421 0.80 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF616-204 - 781 2.5e-33 113.9 98.6 6 16 9.8e-05 0.088 12.9 3.3 7 34 410 444 409 449 0.91 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF616-204 - 781 2.5e-33 113.9 98.6 7 16 0.0096 8.6 6.6 0.3 6 17 437 448 435 453 0.84 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF616-204 - 781 2.5e-33 113.9 98.6 8 16 4.5e-06 0.004 17.2 3.0 6 34 465 500 464 504 0.92 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF616-204 - 781 2.5e-33 113.9 98.6 9 16 1.3e-05 0.012 15.7 4.1 6 34 493 528 491 534 0.90 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF616-204 - 781 2.5e-33 113.9 98.6 10 16 5.3e-05 0.047 13.8 5.0 6 34 521 556 520 556 0.88 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF616-204 - 781 2.5e-33 113.9 98.6 11 16 4.2e-05 0.037 14.1 4.9 6 34 549 584 548 589 0.90 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF616-204 - 781 2.5e-33 113.9 98.6 12 16 4.3e-06 0.0039 17.3 2.4 6 36 605 643 604 647 0.88 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF616-204 - 781 2.5e-33 113.9 98.6 13 16 2.8e-05 0.025 14.7 3.7 6 38 633 672 631 673 0.88 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF616-204 - 781 2.5e-33 113.9 98.6 14 16 0.00033 0.3 11.2 4.8 6 34 661 696 660 696 0.88 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF616-204 - 781 2.5e-33 113.9 98.6 15 16 2.9e-05 0.026 14.6 2.1 6 39 689 729 687 730 0.89 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF616-204 - 781 2.5e-33 113.9 98.6 16 16 0.025 23 5.2 1.0 6 15 745 754 743 758 0.93 Zinc ribbon domain KRAB PF01352.27 42 ZNF616-204 - 781 7.4e-25 86.3 0.1 1 1 1.4e-27 1.3e-24 85.5 0.1 2 42 7 47 6 47 0.98 KRAB box zf-C2H2_jaz PF12171.8 27 ZNF616-204 - 781 7.8e-15 54.7 98.9 1 20 0.012 11 6.5 0.1 2 22 185 205 184 205 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF616-204 - 781 7.8e-15 54.7 98.9 2 20 0.025 22 5.5 0.1 2 20 213 231 212 232 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF616-204 - 781 7.8e-15 54.7 98.9 3 20 0.00047 0.42 10.9 1.3 4 24 243 263 240 263 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF616-204 - 781 7.8e-15 54.7 98.9 4 20 0.0052 4.7 7.6 0.2 2 22 269 289 268 289 0.91 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF616-204 - 781 7.8e-15 54.7 98.9 5 20 0.11 95 3.5 0.1 2 12 297 307 296 317 0.78 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF616-204 - 781 7.8e-15 54.7 98.9 6 20 0.00023 0.21 12.0 0.1 2 21 325 344 324 345 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF616-204 - 781 7.8e-15 54.7 98.9 7 20 0.11 98 3.4 0.4 2 18 353 369 352 373 0.81 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF616-204 - 781 7.8e-15 54.7 98.9 8 20 0.0021 1.8 8.9 0.1 1 21 380 400 380 401 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF616-204 - 781 7.8e-15 54.7 98.9 9 20 0.024 22 5.5 0.1 4 22 411 429 410 429 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF616-204 - 781 7.8e-15 54.7 98.9 10 20 2.2 2e+03 -0.7 1.2 2 21 437 456 436 457 0.85 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF616-204 - 781 7.8e-15 54.7 98.9 11 20 0.21 1.9e+02 2.5 0.2 2 21 465 484 464 485 0.83 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF616-204 - 781 7.8e-15 54.7 98.9 12 20 0.11 1e+02 3.4 0.1 2 20 493 511 492 513 0.83 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF616-204 - 781 7.8e-15 54.7 98.9 13 20 0.00011 0.1 12.9 0.0 2 21 521 540 520 541 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF616-204 - 781 7.8e-15 54.7 98.9 14 20 0.099 89 3.5 0.5 2 12 549 559 548 560 0.90 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF616-204 - 781 7.8e-15 54.7 98.9 15 20 2.2 2e+03 -0.8 0.2 2 12 577 587 576 596 0.86 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF616-204 - 781 7.8e-15 54.7 98.9 16 20 0.039 35 4.8 0.2 2 21 605 624 604 625 0.89 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF616-204 - 781 7.8e-15 54.7 98.9 17 20 0.00014 0.12 12.7 0.1 2 21 661 680 660 681 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF616-204 - 781 7.8e-15 54.7 98.9 18 20 0.0024 2.2 8.7 0.3 2 22 689 709 688 709 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF616-204 - 781 7.8e-15 54.7 98.9 19 20 0.068 61 4.1 0.1 2 21 717 736 716 737 0.80 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF616-204 - 781 7.8e-15 54.7 98.9 20 20 0.32 2.9e+02 1.9 0.4 2 12 745 755 744 764 0.82 Zinc-finger double-stranded RNA-binding zf_UBZ PF18439.1 32 ZNF616-204 - 781 2.2e-13 49.5 94.0 1 21 0.0014 1.2 8.8 0.1 2 18 184 201 183 204 0.80 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF616-204 - 781 2.2e-13 49.5 94.0 2 21 0.034 31 4.3 0.0 3 15 213 225 211 231 0.82 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF616-204 - 781 2.2e-13 49.5 94.0 3 21 0.11 1e+02 2.6 0.2 2 12 240 250 239 255 0.85 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF616-204 - 781 2.2e-13 49.5 94.0 4 21 0.0031 2.8 7.6 0.1 3 15 269 281 267 288 0.82 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF616-204 - 781 2.2e-13 49.5 94.0 5 21 0.34 3e+02 1.1 0.1 3 14 297 308 295 313 0.88 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF616-204 - 781 2.2e-13 49.5 94.0 6 21 0.02 18 5.0 0.1 3 15 325 337 323 344 0.79 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF616-204 - 781 2.2e-13 49.5 94.0 7 21 0.25 2.3e+02 1.5 0.5 3 13 353 363 351 372 0.81 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF616-204 - 781 2.2e-13 49.5 94.0 8 21 0.0061 5.5 6.7 0.1 2 14 380 392 379 399 0.85 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF616-204 - 781 2.2e-13 49.5 94.0 9 21 0.12 1.1e+02 2.5 0.6 4 15 410 421 409 428 0.78 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF616-204 - 781 2.2e-13 49.5 94.0 10 21 0.0074 6.6 6.4 0.1 2 15 436 449 435 454 0.86 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF616-204 - 781 2.2e-13 49.5 94.0 11 21 0.00088 0.79 9.4 0.1 3 20 465 483 463 484 0.83 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF616-204 - 781 2.2e-13 49.5 94.0 12 21 0.0029 2.6 7.7 0.1 3 17 493 507 491 511 0.87 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF616-204 - 781 2.2e-13 49.5 94.0 13 21 0.0039 3.5 7.3 0.1 3 15 521 533 519 540 0.81 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF616-204 - 781 2.2e-13 49.5 94.0 14 21 0.015 13 5.5 0.9 3 14 549 560 547 565 0.87 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF616-204 - 781 2.2e-13 49.5 94.0 15 21 0.073 65 3.2 0.2 3 13 577 587 575 591 0.85 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF616-204 - 781 2.2e-13 49.5 94.0 16 21 0.049 44 3.8 0.2 3 14 605 616 603 624 0.79 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF616-204 - 781 2.2e-13 49.5 94.0 17 21 0.096 86 2.8 0.1 3 13 633 643 631 649 0.88 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF616-204 - 781 2.2e-13 49.5 94.0 18 21 0.005 4.4 7.0 0.1 3 21 661 680 659 680 0.86 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF616-204 - 781 2.2e-13 49.5 94.0 19 21 0.0022 2 8.1 0.5 3 20 689 707 687 708 0.81 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF616-204 - 781 2.2e-13 49.5 94.0 20 21 0.35 3.1e+02 1.1 0.1 2 12 716 726 715 733 0.89 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF616-204 - 781 2.2e-13 49.5 94.0 21 21 0.039 35 4.1 0.6 3 13 745 755 743 763 0.87 Ubiquitin-Binding Zinc Finger C1_1 PF00130.22 53 ZNF616-204 - 781 9.4e-12 44.6 100.1 1 14 0.0022 2 8.4 4.6 4 37 206 249 178 253 0.79 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF616-204 - 781 9.4e-12 44.6 100.1 2 14 0.019 17 5.4 2.6 1 36 231 276 231 280 0.77 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF616-204 - 781 9.4e-12 44.6 100.1 3 14 0.013 12 5.9 3.0 5 36 263 304 255 306 0.77 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF616-204 - 781 9.4e-12 44.6 100.1 4 14 0.0021 1.9 8.5 2.4 5 37 291 333 287 334 0.83 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF616-204 - 781 9.4e-12 44.6 100.1 5 14 0.00014 0.13 12.2 4.3 1 50 315 378 315 380 0.87 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF616-204 - 781 9.4e-12 44.6 100.1 6 14 0.14 1.2e+02 2.6 0.3 10 23 379 392 373 400 0.69 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF616-204 - 781 9.4e-12 44.6 100.1 7 14 0.00074 0.66 9.9 3.0 6 38 403 446 398 454 0.86 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF616-204 - 781 9.4e-12 44.6 100.1 8 14 0.00099 0.89 9.5 2.8 2 38 455 502 451 507 0.89 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF616-204 - 781 9.4e-12 44.6 100.1 9 14 0.0018 1.6 8.7 1.8 5 38 487 530 483 533 0.82 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF616-204 - 781 9.4e-12 44.6 100.1 10 14 0.009 8.1 6.4 5.5 9 38 518 558 510 588 0.61 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF616-204 - 781 9.4e-12 44.6 100.1 11 14 0.025 23 5.0 5.2 4 37 598 641 567 649 0.77 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF616-204 - 781 9.4e-12 44.6 100.1 12 14 0.013 12 5.9 0.2 1 22 651 671 651 678 0.79 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF616-204 - 781 9.4e-12 44.6 100.1 13 14 0.00068 0.61 10.0 2.5 1 36 679 724 679 727 0.89 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF616-204 - 781 9.4e-12 44.6 100.1 14 14 0.035 31 4.6 0.8 8 22 741 758 734 767 0.71 Phorbol esters/diacylglycerol binding domain (C1 domain) zf-C2H2_11 PF16622.5 29 ZNF616-204 - 781 1e-11 44.4 119.7 1 21 0.0072 6.4 6.6 0.1 4 26 184 206 182 207 0.90 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF616-204 - 781 1e-11 44.4 119.7 2 21 0.26 2.3e+02 1.6 0.1 5 14 213 222 210 231 0.87 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF616-204 - 781 1e-11 44.4 119.7 3 21 0.29 2.6e+02 1.5 0.1 4 13 240 249 238 259 0.87 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF616-204 - 781 1e-11 44.4 119.7 4 21 0.17 1.6e+02 2.2 1.0 7 26 271 290 269 291 0.85 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF616-204 - 781 1e-11 44.4 119.7 5 21 0.017 15 5.4 0.8 5 23 297 315 294 319 0.88 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF616-204 - 781 1e-11 44.4 119.7 6 21 0.21 1.9e+02 1.9 0.1 5 14 325 334 323 346 0.79 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF616-204 - 781 1e-11 44.4 119.7 7 21 3.8 3.4e+03 -2.1 1.5 5 26 353 374 352 375 0.76 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF616-204 - 781 1e-11 44.4 119.7 8 21 0.00029 0.26 11.1 0.3 5 26 381 402 378 403 0.94 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF616-204 - 781 1e-11 44.4 119.7 9 21 0.00055 0.49 10.2 0.6 5 26 409 430 406 431 0.93 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF616-204 - 781 1e-11 44.4 119.7 10 21 0.0044 4 7.3 0.5 4 26 436 458 434 459 0.88 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF616-204 - 781 1e-11 44.4 119.7 11 21 0.00065 0.58 10.0 0.2 4 26 464 486 462 487 0.90 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF616-204 - 781 1e-11 44.4 119.7 12 21 0.0031 2.8 7.8 0.2 5 26 493 514 490 515 0.93 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF616-204 - 781 1e-11 44.4 119.7 13 21 0.00035 0.32 10.8 0.1 5 26 521 542 518 543 0.94 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF616-204 - 781 1e-11 44.4 119.7 14 21 0.024 22 4.9 1.0 5 26 549 570 546 571 0.88 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF616-204 - 781 1e-11 44.4 119.7 15 21 0.05 45 3.9 0.2 5 24 577 596 574 599 0.76 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF616-204 - 781 1e-11 44.4 119.7 16 21 0.00033 0.3 10.9 0.2 5 26 605 626 602 627 0.93 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF616-204 - 781 1e-11 44.4 119.7 17 21 0.011 9.5 6.1 0.7 5 23 633 651 630 655 0.88 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF616-204 - 781 1e-11 44.4 119.7 18 21 0.12 1.1e+02 2.7 0.1 5 23 661 679 660 683 0.73 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF616-204 - 781 1e-11 44.4 119.7 19 21 0.47 4.2e+02 0.8 0.2 5 14 689 698 687 710 0.75 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF616-204 - 781 1e-11 44.4 119.7 20 21 0.00023 0.21 11.4 1.3 5 26 717 738 715 739 0.95 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF616-204 - 781 1e-11 44.4 119.7 21 21 0.047 42 4.0 1.5 5 24 745 764 743 767 0.91 zinc-finger C2H2-type zinc_ribbon_15 PF17032.5 86 ZNF616-204 - 781 1.4e-10 41.8 94.1 1 12 0.00089 0.8 10.5 2.4 35 76 182 223 174 228 0.86 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF616-204 - 781 1.4e-10 41.8 94.1 2 12 0.00048 0.43 11.4 1.3 35 78 238 281 222 285 0.85 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF616-204 - 781 1.4e-10 41.8 94.1 3 12 0.026 24 5.8 0.9 32 78 291 337 287 342 0.79 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF616-204 - 781 1.4e-10 41.8 94.1 4 12 0.0077 6.9 7.5 3.5 34 77 349 392 339 397 0.83 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF616-204 - 781 1.4e-10 41.8 94.1 5 12 0.0064 5.8 7.7 5.0 35 77 406 448 399 452 0.85 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF616-204 - 781 1.4e-10 41.8 94.1 6 12 2.3e-05 0.02 15.6 1.3 29 78 456 505 450 511 0.89 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF616-204 - 781 1.4e-10 41.8 94.1 7 12 0.0014 1.2 9.9 2.6 32 76 515 559 510 565 0.85 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF616-204 - 781 1.4e-10 41.8 94.1 8 12 0.0014 1.2 9.9 1.5 33 77 572 616 565 620 0.85 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF616-204 - 781 1.4e-10 41.8 94.1 9 12 0.014 13 6.6 6.2 31 77 598 644 578 648 0.78 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF616-204 - 781 1.4e-10 41.8 94.1 10 12 0.0041 3.7 8.4 2.1 32 79 627 674 622 679 0.81 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF616-204 - 781 1.4e-10 41.8 94.1 11 12 0.0039 3.5 8.5 1.6 35 77 658 700 652 704 0.82 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF616-204 - 781 1.4e-10 41.8 94.1 12 12 0.029 26 5.6 5.5 36 74 687 725 680 758 0.71 zinc-ribbon family XPA_N PF01286.18 32 ZNF616-204 - 781 1.9e-10 40.6 92.1 1 21 0.0085 7.7 6.7 0.1 3 14 186 197 185 202 0.90 XPA protein N-terminal XPA_N PF01286.18 32 ZNF616-204 - 781 1.9e-10 40.6 92.1 2 21 0.00094 0.84 9.7 0.0 3 19 214 230 212 233 0.87 XPA protein N-terminal XPA_N PF01286.18 32 ZNF616-204 - 781 1.9e-10 40.6 92.1 3 21 0.11 1e+02 3.1 0.1 3 12 242 251 241 259 0.74 XPA protein N-terminal XPA_N PF01286.18 32 ZNF616-204 - 781 1.9e-10 40.6 92.1 4 21 0.0086 7.7 6.7 0.2 3 14 270 281 268 285 0.89 XPA protein N-terminal XPA_N PF01286.18 32 ZNF616-204 - 781 1.9e-10 40.6 92.1 5 21 0.39 3.5e+02 1.4 0.1 3 12 298 307 296 308 0.87 XPA protein N-terminal XPA_N PF01286.18 32 ZNF616-204 - 781 1.9e-10 40.6 92.1 6 21 0.004 3.6 7.7 0.2 3 14 326 337 324 341 0.91 XPA protein N-terminal XPA_N PF01286.18 32 ZNF616-204 - 781 1.9e-10 40.6 92.1 7 21 0.16 1.4e+02 2.6 0.1 3 11 354 362 352 365 0.86 XPA protein N-terminal XPA_N PF01286.18 32 ZNF616-204 - 781 1.9e-10 40.6 92.1 8 21 0.082 73 3.5 0.2 3 12 382 391 380 393 0.87 XPA protein N-terminal XPA_N PF01286.18 32 ZNF616-204 - 781 1.9e-10 40.6 92.1 9 21 0.26 2.3e+02 1.9 1.7 3 12 410 419 408 421 0.87 XPA protein N-terminal XPA_N PF01286.18 32 ZNF616-204 - 781 1.9e-10 40.6 92.1 10 21 1.7 1.5e+03 -0.7 0.2 3 9 438 444 437 446 0.87 XPA protein N-terminal XPA_N PF01286.18 32 ZNF616-204 - 781 1.9e-10 40.6 92.1 11 21 0.075 68 3.6 0.1 3 11 466 474 464 480 0.88 XPA protein N-terminal XPA_N PF01286.18 32 ZNF616-204 - 781 1.9e-10 40.6 92.1 12 21 0.06 54 4.0 0.1 3 12 494 503 492 508 0.87 XPA protein N-terminal XPA_N PF01286.18 32 ZNF616-204 - 781 1.9e-10 40.6 92.1 13 21 0.016 15 5.8 0.2 3 13 522 532 520 533 0.90 XPA protein N-terminal XPA_N PF01286.18 32 ZNF616-204 - 781 1.9e-10 40.6 92.1 14 21 0.057 52 4.0 0.8 3 12 550 559 548 564 0.88 XPA protein N-terminal XPA_N PF01286.18 32 ZNF616-204 - 781 1.9e-10 40.6 92.1 15 21 0.47 4.2e+02 1.1 0.1 3 9 578 584 576 587 0.89 XPA protein N-terminal XPA_N PF01286.18 32 ZNF616-204 - 781 1.9e-10 40.6 92.1 16 21 0.017 15 5.7 0.1 3 12 606 615 604 620 0.89 XPA protein N-terminal XPA_N PF01286.18 32 ZNF616-204 - 781 1.9e-10 40.6 92.1 17 21 0.63 5.6e+02 0.7 0.1 3 12 634 643 632 644 0.86 XPA protein N-terminal XPA_N PF01286.18 32 ZNF616-204 - 781 1.9e-10 40.6 92.1 18 21 0.0034 3.1 7.9 0.2 3 14 662 673 660 676 0.91 XPA protein N-terminal XPA_N PF01286.18 32 ZNF616-204 - 781 1.9e-10 40.6 92.1 19 21 0.006 5.4 7.1 0.1 3 14 690 701 688 706 0.88 XPA protein N-terminal XPA_N PF01286.18 32 ZNF616-204 - 781 1.9e-10 40.6 92.1 20 21 0.012 11 6.2 0.1 3 12 718 727 716 730 0.89 XPA protein N-terminal XPA_N PF01286.18 32 ZNF616-204 - 781 1.9e-10 40.6 92.1 21 21 0.047 42 4.3 0.6 3 11 746 754 744 760 0.91 XPA protein N-terminal ADK_lid PF05191.14 36 ZNF616-204 - 781 9.8e-08 31.9 97.0 1 11 0.029 26 4.9 4.6 3 29 186 220 185 253 0.65 Adenylate kinase, active site lid ADK_lid PF05191.14 36 ZNF616-204 - 781 9.8e-08 31.9 97.0 2 11 0.00013 0.12 12.4 0.9 3 34 270 309 269 310 0.74 Adenylate kinase, active site lid ADK_lid PF05191.14 36 ZNF616-204 - 781 9.8e-08 31.9 97.0 3 11 5.4e-05 0.048 13.6 1.4 4 34 327 365 325 366 0.82 Adenylate kinase, active site lid ADK_lid PF05191.14 36 ZNF616-204 - 781 9.8e-08 31.9 97.0 4 11 0.01 9.4 6.3 3.3 4 35 383 422 381 422 0.75 Adenylate kinase, active site lid ADK_lid PF05191.14 36 ZNF616-204 - 781 9.8e-08 31.9 97.0 5 11 0.0091 8.2 6.5 3.8 4 29 439 472 437 478 0.72 Adenylate kinase, active site lid ADK_lid PF05191.14 36 ZNF616-204 - 781 9.8e-08 31.9 97.0 6 11 0.012 11 6.1 2.0 4 33 467 504 465 506 0.69 Adenylate kinase, active site lid ADK_lid PF05191.14 36 ZNF616-204 - 781 9.8e-08 31.9 97.0 7 11 0.49 4.4e+02 1.0 8.7 4 29 523 556 493 562 0.61 Adenylate kinase, active site lid ADK_lid PF05191.14 36 ZNF616-204 - 781 9.8e-08 31.9 97.0 8 11 0.13 1.2e+02 2.8 5.3 4 29 551 584 549 588 0.77 Adenylate kinase, active site lid ADK_lid PF05191.14 36 ZNF616-204 - 781 9.8e-08 31.9 97.0 9 11 0.45 4e+02 1.1 9.9 4 34 579 645 568 646 0.53 Adenylate kinase, active site lid ADK_lid PF05191.14 36 ZNF616-204 - 781 9.8e-08 31.9 97.0 10 11 0.00033 0.3 11.1 1.9 4 29 663 696 661 699 0.81 Adenylate kinase, active site lid ADK_lid PF05191.14 36 ZNF616-204 - 781 9.8e-08 31.9 97.0 11 11 0.0014 1.3 9.1 2.3 1 35 716 758 716 758 0.78 Adenylate kinase, active site lid # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF616-204.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF616-204.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF616-204.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF616-204.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF616-204.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:11:04 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF616-205.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF616-205.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF616-205.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF616-205.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF616-205.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:11:05 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZNF619-201 - 560 5.3e-68 222.6 76.3 1 11 0.3 3.6e+02 1.9 0.2 14 24 187 197 172 198 0.78 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF619-201 - 560 5.3e-68 222.6 76.3 2 11 3e-09 3.6e-06 27.1 4.7 5 25 206 226 203 227 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF619-201 - 560 5.3e-68 222.6 76.3 3 11 3e-11 3.6e-08 33.5 0.3 2 25 231 254 230 255 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF619-201 - 560 5.3e-68 222.6 76.3 4 11 1e-08 1.2e-05 25.5 0.9 1 25 258 282 258 283 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF619-201 - 560 5.3e-68 222.6 76.3 5 11 1.3e-11 1.6e-08 34.6 2.8 2 25 287 310 286 311 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF619-201 - 560 5.3e-68 222.6 76.3 6 11 1.1e-08 1.3e-05 25.4 0.5 5 23 318 336 317 339 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF619-201 - 560 5.3e-68 222.6 76.3 7 11 2.9e-11 3.5e-08 33.5 1.3 3 24 344 365 343 367 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF619-201 - 560 5.3e-68 222.6 76.3 8 11 2.2e-06 0.0026 18.1 2.2 4 25 373 394 371 395 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF619-201 - 560 5.3e-68 222.6 76.3 9 11 3.2e-10 3.9e-07 30.2 0.4 5 25 402 422 399 423 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF619-201 - 560 5.3e-68 222.6 76.3 10 11 3.4e-12 4.1e-09 36.5 0.6 2 24 427 449 426 450 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF619-201 - 560 5.3e-68 222.6 76.3 11 11 0.17 2.1e+02 2.6 0.1 4 14 457 467 454 495 0.77 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZNF619-201 - 560 3.5e-41 137.4 80.7 1 10 0.002 2.4 8.8 3.5 1 23 188 210 188 210 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF619-201 - 560 3.5e-41 137.4 80.7 2 10 1.4e-08 1.7e-05 25.0 2.8 1 23 216 238 216 238 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF619-201 - 560 3.5e-41 137.4 80.7 3 10 4.4e-08 5.3e-05 23.5 1.0 1 23 244 266 244 266 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF619-201 - 560 3.5e-41 137.4 80.7 4 10 9.5e-10 1.1e-06 28.7 1.1 1 23 272 294 272 294 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF619-201 - 560 3.5e-41 137.4 80.7 5 10 0.0031 3.7 8.2 3.8 1 23 300 322 300 322 0.89 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF619-201 - 560 3.5e-41 137.4 80.7 6 10 2.9e-07 0.00034 20.9 0.2 1 23 328 350 328 350 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF619-201 - 560 3.5e-41 137.4 80.7 7 10 9.4e-06 0.011 16.1 2.8 1 23 356 378 356 378 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF619-201 - 560 3.5e-41 137.4 80.7 8 10 7e-05 0.084 13.4 3.4 1 23 384 406 384 406 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF619-201 - 560 3.5e-41 137.4 80.7 9 10 1.6e-08 1.9e-05 24.9 0.4 1 23 412 434 412 434 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF619-201 - 560 3.5e-41 137.4 80.7 10 10 1.8e-05 0.022 15.2 0.2 1 23 440 462 440 462 0.97 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZNF619-201 - 560 2.7e-24 83.7 77.9 1 10 0.18 2.2e+02 3.1 2.4 1 23 188 210 188 211 0.80 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF619-201 - 560 2.7e-24 83.7 77.9 2 10 2e-06 0.0023 18.6 1.7 1 23 216 238 216 239 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF619-201 - 560 2.7e-24 83.7 77.9 3 10 9.8e-06 0.012 16.4 0.8 1 23 244 266 244 267 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF619-201 - 560 2.7e-24 83.7 77.9 4 10 1.2e-06 0.0014 19.3 0.6 1 23 272 294 272 295 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF619-201 - 560 2.7e-24 83.7 77.9 5 10 0.00019 0.22 12.4 3.3 1 23 300 322 300 323 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF619-201 - 560 2.7e-24 83.7 77.9 6 10 4.1e-05 0.049 14.5 0.3 1 23 328 350 328 351 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF619-201 - 560 2.7e-24 83.7 77.9 7 10 0.00033 0.39 11.7 2.8 1 23 356 378 356 379 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF619-201 - 560 2.7e-24 83.7 77.9 8 10 0.0055 6.5 7.9 3.2 1 23 384 406 384 407 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF619-201 - 560 2.7e-24 83.7 77.9 9 10 1.3e-05 0.015 16.1 0.5 1 23 412 434 412 435 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF619-201 - 560 2.7e-24 83.7 77.9 10 10 0.00044 0.52 11.3 0.5 1 23 440 462 440 463 0.93 C2H2-type zinc finger Zn-ribbon_8 PF09723.10 40 ZNF619-201 - 560 7.7e-11 41.9 57.2 1 9 0.00034 0.41 10.8 4.9 6 36 188 225 187 226 0.85 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF619-201 - 560 7.7e-11 41.9 57.2 2 9 6.7e-06 0.008 16.3 3.8 6 35 216 252 215 256 0.92 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF619-201 - 560 7.7e-11 41.9 57.2 3 9 3.8e-06 0.0046 17.1 2.7 6 34 272 307 271 310 0.91 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF619-201 - 560 7.7e-11 41.9 57.2 4 9 0.00081 0.97 9.6 7.4 6 35 300 336 299 340 0.86 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF619-201 - 560 7.7e-11 41.9 57.2 5 9 6.9e-05 0.083 13.0 4.8 6 38 328 367 326 369 0.92 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF619-201 - 560 7.7e-11 41.9 57.2 6 9 0.0017 2 8.6 4.5 6 32 356 389 354 392 0.88 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF619-201 - 560 7.7e-11 41.9 57.2 7 9 9e-05 0.11 12.7 5.2 6 38 384 423 383 425 0.89 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF619-201 - 560 7.7e-11 41.9 57.2 8 9 1.2e-05 0.014 15.5 5.7 6 36 412 449 410 452 0.91 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF619-201 - 560 7.7e-11 41.9 57.2 9 9 0.0066 7.9 6.7 0.7 6 16 440 450 439 462 0.83 Zinc ribbon domain zf-C2H2_6 PF13912.6 27 ZNF619-201 - 560 4.5e-09 36.1 68.6 1 10 3.4 4.1e+03 -2.0 0.5 2 8 188 194 188 195 0.91 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF619-201 - 560 4.5e-09 36.1 68.6 2 10 0.00029 0.35 10.9 1.0 2 13 216 227 216 238 0.88 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF619-201 - 560 4.5e-09 36.1 68.6 3 10 0.85 1e+03 -0.1 0.5 2 12 244 254 244 255 0.86 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF619-201 - 560 4.5e-09 36.1 68.6 4 10 0.00095 1.1 9.3 0.5 2 18 272 288 272 295 0.79 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF619-201 - 560 4.5e-09 36.1 68.6 5 10 0.015 18 5.4 4.5 2 12 300 310 300 313 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF619-201 - 560 4.5e-09 36.1 68.6 6 10 1.7e-05 0.02 14.9 0.4 2 24 328 350 328 353 0.89 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF619-201 - 560 4.5e-09 36.1 68.6 7 10 0.00042 0.5 10.4 1.0 2 12 356 366 356 367 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF619-201 - 560 4.5e-09 36.1 68.6 8 10 0.0073 8.7 6.5 0.3 2 12 384 394 383 394 0.92 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF619-201 - 560 4.5e-09 36.1 68.6 9 10 0.00016 0.2 11.7 0.9 2 12 412 422 412 423 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF619-201 - 560 4.5e-09 36.1 68.6 10 10 0.00063 0.75 9.9 0.8 2 12 440 450 440 450 0.94 C2H2-type zinc finger # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF619-201.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF619-201.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF619-201.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF619-201.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF619-201.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:11:05 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZNF619-202 - 567 6.2e-68 222.4 76.3 1 11 0.31 3.7e+02 1.8 0.2 14 24 194 204 179 205 0.78 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF619-202 - 567 6.2e-68 222.4 76.3 2 11 3.1e-09 3.7e-06 27.1 4.7 5 25 213 233 210 234 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF619-202 - 567 6.2e-68 222.4 76.3 3 11 3.1e-11 3.7e-08 33.4 0.3 2 25 238 261 237 262 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF619-202 - 567 6.2e-68 222.4 76.3 4 11 1e-08 1.3e-05 25.4 0.9 1 25 265 289 265 290 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF619-202 - 567 6.2e-68 222.4 76.3 5 11 1.4e-11 1.6e-08 34.6 2.8 2 25 294 317 293 318 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF619-202 - 567 6.2e-68 222.4 76.3 6 11 1.1e-08 1.3e-05 25.3 0.5 5 23 325 343 324 346 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF619-202 - 567 6.2e-68 222.4 76.3 7 11 2.9e-11 3.5e-08 33.5 1.3 3 24 351 372 350 374 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF619-202 - 567 6.2e-68 222.4 76.3 8 11 2.2e-06 0.0027 18.1 2.2 4 25 380 401 378 402 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF619-202 - 567 6.2e-68 222.4 76.3 9 11 3.3e-10 3.9e-07 30.2 0.4 5 25 409 429 406 430 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF619-202 - 567 6.2e-68 222.4 76.3 10 11 3.4e-12 4.1e-09 36.5 0.6 2 24 434 456 433 457 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF619-202 - 567 6.2e-68 222.4 76.3 11 11 0.18 2.1e+02 2.6 0.1 4 14 464 474 461 502 0.77 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZNF619-202 - 567 4.1e-41 137.2 80.7 1 10 0.002 2.4 8.8 3.5 1 23 195 217 195 217 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF619-202 - 567 4.1e-41 137.2 80.7 2 10 1.4e-08 1.7e-05 25.0 2.8 1 23 223 245 223 245 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF619-202 - 567 4.1e-41 137.2 80.7 3 10 4.5e-08 5.3e-05 23.4 1.0 1 23 251 273 251 273 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF619-202 - 567 4.1e-41 137.2 80.7 4 10 9.7e-10 1.2e-06 28.7 1.1 1 23 279 301 279 301 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF619-202 - 567 4.1e-41 137.2 80.7 5 10 0.0031 3.7 8.2 3.8 1 23 307 329 307 329 0.89 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF619-202 - 567 4.1e-41 137.2 80.7 6 10 2.9e-07 0.00035 20.9 0.2 1 23 335 357 335 357 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF619-202 - 567 4.1e-41 137.2 80.7 7 10 9.5e-06 0.011 16.1 2.8 1 23 363 385 363 385 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF619-202 - 567 4.1e-41 137.2 80.7 8 10 7.1e-05 0.085 13.3 3.4 1 23 391 413 391 413 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF619-202 - 567 4.1e-41 137.2 80.7 9 10 1.6e-08 1.9e-05 24.8 0.4 1 23 419 441 419 441 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF619-202 - 567 4.1e-41 137.2 80.7 10 10 1.9e-05 0.022 15.2 0.2 1 23 447 469 447 469 0.97 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZNF619-202 - 567 3.1e-24 83.6 77.9 1 10 0.19 2.2e+02 3.1 2.4 1 23 195 217 195 218 0.80 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF619-202 - 567 3.1e-24 83.6 77.9 2 10 2e-06 0.0024 18.6 1.7 1 23 223 245 223 246 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF619-202 - 567 3.1e-24 83.6 77.9 3 10 1e-05 0.012 16.4 0.8 1 23 251 273 251 274 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF619-202 - 567 3.1e-24 83.6 77.9 4 10 1.2e-06 0.0014 19.3 0.6 1 23 279 301 279 302 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF619-202 - 567 3.1e-24 83.6 77.9 5 10 0.00019 0.23 12.4 3.3 1 23 307 329 307 330 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF619-202 - 567 3.1e-24 83.6 77.9 6 10 4.1e-05 0.049 14.5 0.3 1 23 335 357 335 358 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF619-202 - 567 3.1e-24 83.6 77.9 7 10 0.00034 0.4 11.6 2.8 1 23 363 385 363 386 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF619-202 - 567 3.1e-24 83.6 77.9 8 10 0.0055 6.6 7.9 3.2 1 23 391 413 391 414 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF619-202 - 567 3.1e-24 83.6 77.9 9 10 1.3e-05 0.015 16.1 0.5 1 23 419 441 419 442 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF619-202 - 567 3.1e-24 83.6 77.9 10 10 0.00045 0.53 11.3 0.5 1 23 447 469 447 470 0.93 C2H2-type zinc finger Zn-ribbon_8 PF09723.10 40 ZNF619-202 - 567 5.1e-11 42.5 56.5 1 9 0.00035 0.42 10.8 4.9 6 36 195 232 194 233 0.85 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF619-202 - 567 5.1e-11 42.5 56.5 2 9 6.7e-06 0.008 16.3 3.8 6 35 223 259 222 263 0.92 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF619-202 - 567 5.1e-11 42.5 56.5 3 9 4.1e-06 0.0049 17.0 2.8 6 34 279 314 278 317 0.91 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF619-202 - 567 5.1e-11 42.5 56.5 4 9 0.00068 0.81 9.9 7.1 6 35 307 343 306 347 0.86 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF619-202 - 567 5.1e-11 42.5 56.5 5 9 5.2e-05 0.063 13.4 4.3 6 38 335 374 333 376 0.92 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF619-202 - 567 5.1e-11 42.5 56.5 6 9 0.0016 2 8.6 4.5 6 32 363 396 362 400 0.88 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF619-202 - 567 5.1e-11 42.5 56.5 7 9 0.0001 0.12 12.5 5.4 6 38 391 430 388 432 0.89 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF619-202 - 567 5.1e-11 42.5 56.5 8 9 1.1e-05 0.013 15.6 5.6 6 36 419 456 418 459 0.91 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF619-202 - 567 5.1e-11 42.5 56.5 9 9 0.007 8.3 6.6 0.7 6 16 447 457 446 467 0.83 Zinc ribbon domain zf-C2H2_6 PF13912.6 27 ZNF619-202 - 567 5.2e-09 35.9 68.6 1 10 3.4 4.1e+03 -2.1 0.5 2 8 195 201 195 202 0.91 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF619-202 - 567 5.2e-09 35.9 68.6 2 10 0.0003 0.35 10.9 1.0 2 13 223 234 223 245 0.88 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF619-202 - 567 5.2e-09 35.9 68.6 3 10 0.86 1e+03 -0.1 0.5 2 12 251 261 251 262 0.86 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF619-202 - 567 5.2e-09 35.9 68.6 4 10 0.00097 1.2 9.3 0.5 2 18 279 295 279 302 0.79 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF619-202 - 567 5.2e-09 35.9 68.6 5 10 0.016 19 5.4 4.5 2 12 307 317 307 320 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF619-202 - 567 5.2e-09 35.9 68.6 6 10 1.7e-05 0.02 14.9 0.4 2 24 335 357 335 360 0.89 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF619-202 - 567 5.2e-09 35.9 68.6 7 10 0.00042 0.51 10.4 1.0 2 12 363 373 363 374 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF619-202 - 567 5.2e-09 35.9 68.6 8 10 0.0074 8.8 6.4 0.3 2 12 391 401 390 401 0.92 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF619-202 - 567 5.2e-09 35.9 68.6 9 10 0.00017 0.2 11.7 0.9 2 12 419 429 419 430 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF619-202 - 567 5.2e-09 35.9 68.6 10 10 0.00064 0.76 9.9 0.8 2 12 447 457 447 457 0.94 C2H2-type zinc finger # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF619-202.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF619-202.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF619-202.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF619-202.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF619-202.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:11:06 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZNF619-203 - 481 8.3e-69 225.2 76.3 1 11 0.29 3e+02 2.1 0.2 14 24 108 118 93 119 0.78 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF619-203 - 481 8.3e-69 225.2 76.3 2 11 2.9e-09 3e-06 27.4 4.7 5 25 127 147 124 148 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF619-203 - 481 8.3e-69 225.2 76.3 3 11 2.9e-11 3e-08 33.7 0.3 2 25 152 175 151 176 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF619-203 - 481 8.3e-69 225.2 76.3 4 11 9.8e-09 1e-05 25.7 0.9 1 25 179 203 179 204 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF619-203 - 481 8.3e-69 225.2 76.3 5 11 1.3e-11 1.3e-08 34.8 2.8 2 25 208 231 207 232 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF619-203 - 481 8.3e-69 225.2 76.3 6 11 1.1e-08 1.1e-05 25.6 0.5 5 23 239 257 238 260 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF619-203 - 481 8.3e-69 225.2 76.3 7 11 2.7e-11 2.9e-08 33.8 1.3 3 24 265 286 264 288 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF619-203 - 481 8.3e-69 225.2 76.3 8 11 2.1e-06 0.0022 18.4 2.2 4 25 294 315 292 316 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF619-203 - 481 8.3e-69 225.2 76.3 9 11 3.1e-10 3.2e-07 30.5 0.4 5 25 323 343 320 344 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF619-203 - 481 8.3e-69 225.2 76.3 10 11 3.2e-12 3.4e-09 36.7 0.6 2 24 348 370 347 371 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF619-203 - 481 8.3e-69 225.2 76.3 11 11 0.16 1.7e+02 2.9 0.1 4 14 378 388 375 416 0.77 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZNF619-203 - 481 6.4e-42 139.7 80.7 1 10 0.0019 2 9.0 3.5 1 23 109 131 109 131 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF619-203 - 481 6.4e-42 139.7 80.7 2 10 1.3e-08 1.4e-05 25.3 2.8 1 23 137 159 137 159 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF619-203 - 481 6.4e-42 139.7 80.7 3 10 4.2e-08 4.4e-05 23.7 1.0 1 23 165 187 165 187 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF619-203 - 481 6.4e-42 139.7 80.7 4 10 9e-10 9.5e-07 28.9 1.1 1 23 193 215 193 215 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF619-203 - 481 6.4e-42 139.7 80.7 5 10 0.0029 3.1 8.4 3.8 1 23 221 243 221 243 0.89 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF619-203 - 481 6.4e-42 139.7 80.7 6 10 2.7e-07 0.00028 21.1 0.2 1 23 249 271 249 271 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF619-203 - 481 6.4e-42 139.7 80.7 7 10 8.9e-06 0.0093 16.4 2.8 1 23 277 299 277 299 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF619-203 - 481 6.4e-42 139.7 80.7 8 10 6.6e-05 0.07 13.6 3.4 1 23 305 327 305 327 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF619-203 - 481 6.4e-42 139.7 80.7 9 10 1.5e-08 1.6e-05 25.1 0.4 1 23 333 355 333 355 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF619-203 - 481 6.4e-42 139.7 80.7 10 10 1.7e-05 0.018 15.5 0.2 1 23 361 383 361 383 0.97 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZNF619-203 - 481 5e-25 86.0 77.9 1 10 0.17 1.8e+02 3.4 2.4 1 23 109 131 109 132 0.80 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF619-203 - 481 5e-25 86.0 77.9 2 10 1.8e-06 0.0019 18.8 1.7 1 23 137 159 137 160 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF619-203 - 481 5e-25 86.0 77.9 3 10 9.3e-06 0.0098 16.7 0.8 1 23 165 187 165 188 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF619-203 - 481 5e-25 86.0 77.9 4 10 1.1e-06 0.0012 19.5 0.6 1 23 193 215 193 216 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF619-203 - 481 5e-25 86.0 77.9 5 10 0.00018 0.19 12.7 3.3 1 23 221 243 221 244 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF619-203 - 481 5e-25 86.0 77.9 6 10 3.8e-05 0.04 14.7 0.3 1 23 249 271 249 272 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF619-203 - 481 5e-25 86.0 77.9 7 10 0.00031 0.33 11.9 2.8 1 23 277 299 277 300 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF619-203 - 481 5e-25 86.0 77.9 8 10 0.0052 5.4 8.1 3.2 1 23 305 327 305 328 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF619-203 - 481 5e-25 86.0 77.9 9 10 1.2e-05 0.013 16.3 0.5 1 23 333 355 333 356 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF619-203 - 481 5e-25 86.0 77.9 10 10 0.00041 0.44 11.5 0.5 1 23 361 383 361 384 0.93 C2H2-type zinc finger Zn-ribbon_8 PF09723.10 40 ZNF619-203 - 481 4.5e-11 42.7 58.1 1 9 0.00036 0.38 10.9 5.1 6 36 109 146 108 147 0.85 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF619-203 - 481 4.5e-11 42.7 58.1 2 9 6.2e-06 0.0065 16.6 3.8 6 35 137 173 136 177 0.92 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF619-203 - 481 4.5e-11 42.7 58.1 3 9 1.4e-05 0.014 15.5 4.6 6 34 193 228 192 232 0.91 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF619-203 - 481 4.5e-11 42.7 58.1 4 9 0.00075 0.79 9.9 7.4 6 35 221 257 220 261 0.86 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF619-203 - 481 4.5e-11 42.7 58.1 5 9 5.5e-05 0.058 13.5 4.5 6 38 249 288 248 290 0.92 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF619-203 - 481 4.5e-11 42.7 58.1 6 9 0.0017 1.8 8.8 4.7 6 32 277 310 276 314 0.88 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF619-203 - 481 4.5e-11 42.7 58.1 7 9 0.00011 0.11 12.6 5.6 6 38 305 344 304 346 0.89 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF619-203 - 481 4.5e-11 42.7 58.1 8 9 1e-05 0.011 15.8 5.6 6 36 333 370 332 373 0.91 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF619-203 - 481 4.5e-11 42.7 58.1 9 9 0.0065 6.9 6.9 0.7 6 16 361 371 360 382 0.83 Zinc ribbon domain zf-C2H2_6 PF13912.6 27 ZNF619-203 - 481 9.3e-10 38.3 68.6 1 10 3.3 3.4e+03 -1.8 0.5 2 8 109 115 109 116 0.91 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF619-203 - 481 9.3e-10 38.3 68.6 2 10 0.00028 0.29 11.2 1.0 2 13 137 148 137 159 0.88 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF619-203 - 481 9.3e-10 38.3 68.6 3 10 0.82 8.6e+02 0.1 0.5 2 12 165 175 165 176 0.86 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF619-203 - 481 9.3e-10 38.3 68.6 4 10 0.0009 0.95 9.5 0.5 2 18 193 209 193 216 0.79 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF619-203 - 481 9.3e-10 38.3 68.6 5 10 0.015 16 5.7 4.5 2 12 221 231 221 234 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF619-203 - 481 9.3e-10 38.3 68.6 6 10 1.6e-05 0.017 15.1 0.4 2 24 249 271 249 274 0.89 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF619-203 - 481 9.3e-10 38.3 68.6 7 10 0.0004 0.42 10.7 1.0 2 12 277 287 277 288 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF619-203 - 481 9.3e-10 38.3 68.6 8 10 0.007 7.4 6.7 0.3 2 12 305 315 304 315 0.92 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF619-203 - 481 9.3e-10 38.3 68.6 9 10 0.00016 0.16 12.0 0.9 2 12 333 343 333 344 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF619-203 - 481 9.3e-10 38.3 68.6 10 10 0.0006 0.63 10.1 0.8 2 12 361 371 361 371 0.94 C2H2-type zinc finger zf_UBZ PF18439.1 32 ZNF619-203 - 481 8.9e-07 28.4 58.2 1 10 0.047 50 3.6 1.9 3 24 109 125 107 128 0.84 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF619-203 - 481 8.9e-07 28.4 58.2 2 10 0.0024 2.6 7.7 0.2 3 13 137 147 135 156 0.80 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF619-203 - 481 8.9e-07 28.4 58.2 3 10 0.00068 0.72 9.5 0.5 3 21 165 184 163 184 0.87 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF619-203 - 481 8.9e-07 28.4 58.2 4 10 0.0077 8.2 6.1 0.1 3 15 193 205 191 212 0.80 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF619-203 - 481 8.9e-07 28.4 58.2 5 10 0.045 47 3.7 2.6 3 15 221 233 219 239 0.87 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF619-203 - 481 8.9e-07 28.4 58.2 6 10 0.002 2.1 8.0 0.2 3 16 249 262 247 268 0.80 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF619-203 - 481 8.9e-07 28.4 58.2 7 10 0.0045 4.8 6.9 0.5 3 21 277 296 275 300 0.81 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF619-203 - 481 8.9e-07 28.4 58.2 8 10 0.12 1.3e+02 2.3 0.6 3 16 305 318 303 323 0.86 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF619-203 - 481 8.9e-07 28.4 58.2 9 10 0.001 1.1 8.9 0.3 3 20 333 351 331 352 0.81 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF619-203 - 481 8.9e-07 28.4 58.2 10 10 0.0028 2.9 7.6 0.3 3 24 361 383 359 388 0.88 Ubiquitin-Binding Zinc Finger # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF619-203.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF619-203.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF619-203.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF619-203.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF619-203.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:11:06 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZNF619-204 - 481 8.3e-69 225.2 76.3 1 11 0.29 3e+02 2.1 0.2 14 24 108 118 93 119 0.78 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF619-204 - 481 8.3e-69 225.2 76.3 2 11 2.9e-09 3e-06 27.4 4.7 5 25 127 147 124 148 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF619-204 - 481 8.3e-69 225.2 76.3 3 11 2.9e-11 3e-08 33.7 0.3 2 25 152 175 151 176 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF619-204 - 481 8.3e-69 225.2 76.3 4 11 9.8e-09 1e-05 25.7 0.9 1 25 179 203 179 204 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF619-204 - 481 8.3e-69 225.2 76.3 5 11 1.3e-11 1.3e-08 34.8 2.8 2 25 208 231 207 232 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF619-204 - 481 8.3e-69 225.2 76.3 6 11 1.1e-08 1.1e-05 25.6 0.5 5 23 239 257 238 260 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF619-204 - 481 8.3e-69 225.2 76.3 7 11 2.7e-11 2.9e-08 33.8 1.3 3 24 265 286 264 288 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF619-204 - 481 8.3e-69 225.2 76.3 8 11 2.1e-06 0.0022 18.4 2.2 4 25 294 315 292 316 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF619-204 - 481 8.3e-69 225.2 76.3 9 11 3.1e-10 3.2e-07 30.5 0.4 5 25 323 343 320 344 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF619-204 - 481 8.3e-69 225.2 76.3 10 11 3.2e-12 3.4e-09 36.7 0.6 2 24 348 370 347 371 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF619-204 - 481 8.3e-69 225.2 76.3 11 11 0.16 1.7e+02 2.9 0.1 4 14 378 388 375 416 0.77 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZNF619-204 - 481 6.4e-42 139.7 80.7 1 10 0.0019 2 9.0 3.5 1 23 109 131 109 131 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF619-204 - 481 6.4e-42 139.7 80.7 2 10 1.3e-08 1.4e-05 25.3 2.8 1 23 137 159 137 159 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF619-204 - 481 6.4e-42 139.7 80.7 3 10 4.2e-08 4.4e-05 23.7 1.0 1 23 165 187 165 187 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF619-204 - 481 6.4e-42 139.7 80.7 4 10 9e-10 9.5e-07 28.9 1.1 1 23 193 215 193 215 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF619-204 - 481 6.4e-42 139.7 80.7 5 10 0.0029 3.1 8.4 3.8 1 23 221 243 221 243 0.89 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF619-204 - 481 6.4e-42 139.7 80.7 6 10 2.7e-07 0.00028 21.1 0.2 1 23 249 271 249 271 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF619-204 - 481 6.4e-42 139.7 80.7 7 10 8.9e-06 0.0093 16.4 2.8 1 23 277 299 277 299 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF619-204 - 481 6.4e-42 139.7 80.7 8 10 6.6e-05 0.07 13.6 3.4 1 23 305 327 305 327 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF619-204 - 481 6.4e-42 139.7 80.7 9 10 1.5e-08 1.6e-05 25.1 0.4 1 23 333 355 333 355 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF619-204 - 481 6.4e-42 139.7 80.7 10 10 1.7e-05 0.018 15.5 0.2 1 23 361 383 361 383 0.97 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZNF619-204 - 481 5e-25 86.0 77.9 1 10 0.17 1.8e+02 3.4 2.4 1 23 109 131 109 132 0.80 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF619-204 - 481 5e-25 86.0 77.9 2 10 1.8e-06 0.0019 18.8 1.7 1 23 137 159 137 160 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF619-204 - 481 5e-25 86.0 77.9 3 10 9.3e-06 0.0098 16.7 0.8 1 23 165 187 165 188 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF619-204 - 481 5e-25 86.0 77.9 4 10 1.1e-06 0.0012 19.5 0.6 1 23 193 215 193 216 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF619-204 - 481 5e-25 86.0 77.9 5 10 0.00018 0.19 12.7 3.3 1 23 221 243 221 244 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF619-204 - 481 5e-25 86.0 77.9 6 10 3.8e-05 0.04 14.7 0.3 1 23 249 271 249 272 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF619-204 - 481 5e-25 86.0 77.9 7 10 0.00031 0.33 11.9 2.8 1 23 277 299 277 300 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF619-204 - 481 5e-25 86.0 77.9 8 10 0.0052 5.4 8.1 3.2 1 23 305 327 305 328 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF619-204 - 481 5e-25 86.0 77.9 9 10 1.2e-05 0.013 16.3 0.5 1 23 333 355 333 356 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF619-204 - 481 5e-25 86.0 77.9 10 10 0.00041 0.44 11.5 0.5 1 23 361 383 361 384 0.93 C2H2-type zinc finger Zn-ribbon_8 PF09723.10 40 ZNF619-204 - 481 4.5e-11 42.7 58.1 1 9 0.00036 0.38 10.9 5.1 6 36 109 146 108 147 0.85 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF619-204 - 481 4.5e-11 42.7 58.1 2 9 6.2e-06 0.0065 16.6 3.8 6 35 137 173 136 177 0.92 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF619-204 - 481 4.5e-11 42.7 58.1 3 9 1.4e-05 0.014 15.5 4.6 6 34 193 228 192 232 0.91 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF619-204 - 481 4.5e-11 42.7 58.1 4 9 0.00075 0.79 9.9 7.4 6 35 221 257 220 261 0.86 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF619-204 - 481 4.5e-11 42.7 58.1 5 9 5.5e-05 0.058 13.5 4.5 6 38 249 288 248 290 0.92 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF619-204 - 481 4.5e-11 42.7 58.1 6 9 0.0017 1.8 8.8 4.7 6 32 277 310 276 314 0.88 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF619-204 - 481 4.5e-11 42.7 58.1 7 9 0.00011 0.11 12.6 5.6 6 38 305 344 304 346 0.89 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF619-204 - 481 4.5e-11 42.7 58.1 8 9 1e-05 0.011 15.8 5.6 6 36 333 370 332 373 0.91 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF619-204 - 481 4.5e-11 42.7 58.1 9 9 0.0065 6.9 6.9 0.7 6 16 361 371 360 382 0.83 Zinc ribbon domain zf-C2H2_6 PF13912.6 27 ZNF619-204 - 481 9.3e-10 38.3 68.6 1 10 3.3 3.4e+03 -1.8 0.5 2 8 109 115 109 116 0.91 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF619-204 - 481 9.3e-10 38.3 68.6 2 10 0.00028 0.29 11.2 1.0 2 13 137 148 137 159 0.88 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF619-204 - 481 9.3e-10 38.3 68.6 3 10 0.82 8.6e+02 0.1 0.5 2 12 165 175 165 176 0.86 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF619-204 - 481 9.3e-10 38.3 68.6 4 10 0.0009 0.95 9.5 0.5 2 18 193 209 193 216 0.79 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF619-204 - 481 9.3e-10 38.3 68.6 5 10 0.015 16 5.7 4.5 2 12 221 231 221 234 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF619-204 - 481 9.3e-10 38.3 68.6 6 10 1.6e-05 0.017 15.1 0.4 2 24 249 271 249 274 0.89 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF619-204 - 481 9.3e-10 38.3 68.6 7 10 0.0004 0.42 10.7 1.0 2 12 277 287 277 288 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF619-204 - 481 9.3e-10 38.3 68.6 8 10 0.007 7.4 6.7 0.3 2 12 305 315 304 315 0.92 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF619-204 - 481 9.3e-10 38.3 68.6 9 10 0.00016 0.16 12.0 0.9 2 12 333 343 333 344 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF619-204 - 481 9.3e-10 38.3 68.6 10 10 0.0006 0.63 10.1 0.8 2 12 361 371 361 371 0.94 C2H2-type zinc finger zf_UBZ PF18439.1 32 ZNF619-204 - 481 8.9e-07 28.4 58.2 1 10 0.047 50 3.6 1.9 3 24 109 125 107 128 0.84 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF619-204 - 481 8.9e-07 28.4 58.2 2 10 0.0024 2.6 7.7 0.2 3 13 137 147 135 156 0.80 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF619-204 - 481 8.9e-07 28.4 58.2 3 10 0.00068 0.72 9.5 0.5 3 21 165 184 163 184 0.87 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF619-204 - 481 8.9e-07 28.4 58.2 4 10 0.0077 8.2 6.1 0.1 3 15 193 205 191 212 0.80 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF619-204 - 481 8.9e-07 28.4 58.2 5 10 0.045 47 3.7 2.6 3 15 221 233 219 239 0.87 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF619-204 - 481 8.9e-07 28.4 58.2 6 10 0.002 2.1 8.0 0.2 3 16 249 262 247 268 0.80 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF619-204 - 481 8.9e-07 28.4 58.2 7 10 0.0045 4.8 6.9 0.5 3 21 277 296 275 300 0.81 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF619-204 - 481 8.9e-07 28.4 58.2 8 10 0.12 1.3e+02 2.3 0.6 3 16 305 318 303 323 0.86 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF619-204 - 481 8.9e-07 28.4 58.2 9 10 0.001 1.1 8.9 0.3 3 20 333 351 331 352 0.81 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF619-204 - 481 8.9e-07 28.4 58.2 10 10 0.0028 2.9 7.6 0.3 3 24 361 383 359 388 0.88 Ubiquitin-Binding Zinc Finger # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF619-204.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF619-204.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF619-204.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF619-204.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF619-204.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:11:06 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZNF619-205 - 532 3e-68 223.4 76.3 1 11 0.29 3.4e+02 1.9 0.2 14 24 159 169 144 170 0.78 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF619-205 - 532 3e-68 223.4 76.3 2 11 2.8e-09 3.4e-06 27.2 4.7 5 25 178 198 175 199 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF619-205 - 532 3e-68 223.4 76.3 3 11 2.9e-11 3.4e-08 33.5 0.3 2 25 203 226 202 227 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF619-205 - 532 3e-68 223.4 76.3 4 11 9.7e-09 1.2e-05 25.5 0.9 1 25 230 254 230 255 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF619-205 - 532 3e-68 223.4 76.3 5 11 1.3e-11 1.5e-08 34.7 2.8 2 25 259 282 258 283 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF619-205 - 532 3e-68 223.4 76.3 6 11 1e-08 1.2e-05 25.4 0.5 5 23 290 308 289 311 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF619-205 - 532 3e-68 223.4 76.3 7 11 2.7e-11 3.3e-08 33.6 1.3 3 24 316 337 315 339 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF619-205 - 532 3e-68 223.4 76.3 8 11 2.1e-06 0.0025 18.2 2.2 4 25 345 366 343 367 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF619-205 - 532 3e-68 223.4 76.3 9 11 3e-10 3.6e-07 30.3 0.4 5 25 374 394 371 395 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF619-205 - 532 3e-68 223.4 76.3 10 11 3.2e-12 3.8e-09 36.6 0.6 2 24 399 421 398 422 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF619-205 - 532 3e-68 223.4 76.3 11 11 0.16 1.9e+02 2.7 0.1 4 14 429 439 426 467 0.77 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZNF619-205 - 532 2.1e-41 138.1 80.7 1 10 0.0019 2.2 8.9 3.5 1 23 160 182 160 182 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF619-205 - 532 2.1e-41 138.1 80.7 2 10 1.3e-08 1.6e-05 25.1 2.8 1 23 188 210 188 210 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF619-205 - 532 2.1e-41 138.1 80.7 3 10 4.1e-08 4.9e-05 23.5 1.0 1 23 216 238 216 238 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF619-205 - 532 2.1e-41 138.1 80.7 4 10 9e-10 1.1e-06 28.8 1.1 1 23 244 266 244 266 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF619-205 - 532 2.1e-41 138.1 80.7 5 10 0.0029 3.5 8.3 3.8 1 23 272 294 272 294 0.89 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF619-205 - 532 2.1e-41 138.1 80.7 6 10 2.7e-07 0.00032 21.0 0.2 1 23 300 322 300 322 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF619-205 - 532 2.1e-41 138.1 80.7 7 10 8.8e-06 0.011 16.2 2.8 1 23 328 350 328 350 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF619-205 - 532 2.1e-41 138.1 80.7 8 10 6.6e-05 0.079 13.5 3.4 1 23 356 378 356 378 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF619-205 - 532 2.1e-41 138.1 80.7 9 10 1.5e-08 1.8e-05 24.9 0.4 1 23 384 406 384 406 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF619-205 - 532 2.1e-41 138.1 80.7 10 10 1.7e-05 0.021 15.3 0.2 1 23 412 434 412 434 0.97 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZNF619-205 - 532 1.7e-24 84.4 77.9 1 10 0.17 2.1e+02 3.2 2.4 1 23 160 182 160 183 0.80 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF619-205 - 532 1.7e-24 84.4 77.9 2 10 1.8e-06 0.0022 18.7 1.7 1 23 188 210 188 211 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF619-205 - 532 1.7e-24 84.4 77.9 3 10 9.2e-06 0.011 16.5 0.8 1 23 216 238 216 239 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF619-205 - 532 1.7e-24 84.4 77.9 4 10 1.1e-06 0.0013 19.4 0.6 1 23 244 266 244 267 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF619-205 - 532 1.7e-24 84.4 77.9 5 10 0.00018 0.21 12.5 3.3 1 23 272 294 272 295 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF619-205 - 532 1.7e-24 84.4 77.9 6 10 3.8e-05 0.046 14.6 0.3 1 23 300 322 300 323 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF619-205 - 532 1.7e-24 84.4 77.9 7 10 0.00031 0.37 11.7 2.8 1 23 328 350 328 351 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF619-205 - 532 1.7e-24 84.4 77.9 8 10 0.0051 6.1 8.0 3.2 1 23 356 378 356 379 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF619-205 - 532 1.7e-24 84.4 77.9 9 10 1.2e-05 0.014 16.2 0.5 1 23 384 406 384 407 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF619-205 - 532 1.7e-24 84.4 77.9 10 10 0.00041 0.49 11.4 0.5 1 23 412 434 412 435 0.93 C2H2-type zinc finger Zn-ribbon_8 PF09723.10 40 ZNF619-205 - 532 8.8e-11 41.7 57.9 1 9 0.00038 0.45 10.7 5.2 6 36 160 197 159 198 0.85 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF619-205 - 532 8.8e-11 41.7 57.9 2 9 6.3e-06 0.0075 16.4 3.9 6 35 188 224 187 228 0.92 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF619-205 - 532 8.8e-11 41.7 57.9 3 9 1.1e-05 0.013 15.6 4.3 6 34 244 279 243 283 0.91 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF619-205 - 532 8.8e-11 41.7 57.9 4 9 0.00084 1 9.6 7.5 6 35 272 308 271 312 0.86 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF619-205 - 532 8.8e-11 41.7 57.9 5 9 6.2e-05 0.074 13.2 4.7 6 38 300 339 299 341 0.92 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF619-205 - 532 8.8e-11 41.7 57.9 6 9 0.0018 2.1 8.5 4.7 6 32 328 361 326 364 0.88 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF619-205 - 532 8.8e-11 41.7 57.9 7 9 0.00011 0.13 12.4 5.6 6 38 356 395 355 397 0.89 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF619-205 - 532 8.8e-11 41.7 57.9 8 9 9.8e-06 0.012 15.7 5.6 6 36 384 421 382 424 0.91 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF619-205 - 532 8.8e-11 41.7 57.9 9 9 0.0061 7.3 6.8 0.7 6 16 412 422 410 434 0.84 Zinc ribbon domain zf-C2H2_6 PF13912.6 27 ZNF619-205 - 532 2.7e-09 36.8 68.6 1 10 3.2 3.8e+03 -2.0 0.5 2 8 160 166 160 167 0.91 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF619-205 - 532 2.7e-09 36.8 68.6 2 10 0.00028 0.33 11.0 1.0 2 13 188 199 188 210 0.88 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF619-205 - 532 2.7e-09 36.8 68.6 3 10 0.8 9.6e+02 -0.0 0.5 2 12 216 226 216 227 0.86 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF619-205 - 532 2.7e-09 36.8 68.6 4 10 0.0009 1.1 9.4 0.5 2 18 244 260 244 267 0.79 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF619-205 - 532 2.7e-09 36.8 68.6 5 10 0.015 17 5.5 4.5 2 12 272 282 272 285 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF619-205 - 532 2.7e-09 36.8 68.6 6 10 1.6e-05 0.019 15.0 0.4 2 24 300 322 300 325 0.89 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF619-205 - 532 2.7e-09 36.8 68.6 7 10 0.00039 0.47 10.5 1.0 2 12 328 338 328 339 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF619-205 - 532 2.7e-09 36.8 68.6 8 10 0.0069 8.2 6.5 0.3 2 12 356 366 355 366 0.92 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF619-205 - 532 2.7e-09 36.8 68.6 9 10 0.00015 0.18 11.8 0.9 2 12 384 394 384 395 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF619-205 - 532 2.7e-09 36.8 68.6 10 10 0.00059 0.71 9.9 0.8 2 12 412 422 412 422 0.94 C2H2-type zinc finger # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF619-205.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF619-205.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF619-205.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF619-205.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF619-205.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:11:07 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF619-206.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF619-206.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF619-206.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF619-206.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF619-206.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:11:07 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZNF619-207 - 481 8.3e-69 225.2 76.3 1 11 0.29 3e+02 2.1 0.2 14 24 108 118 93 119 0.78 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF619-207 - 481 8.3e-69 225.2 76.3 2 11 2.9e-09 3e-06 27.4 4.7 5 25 127 147 124 148 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF619-207 - 481 8.3e-69 225.2 76.3 3 11 2.9e-11 3e-08 33.7 0.3 2 25 152 175 151 176 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF619-207 - 481 8.3e-69 225.2 76.3 4 11 9.8e-09 1e-05 25.7 0.9 1 25 179 203 179 204 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF619-207 - 481 8.3e-69 225.2 76.3 5 11 1.3e-11 1.3e-08 34.8 2.8 2 25 208 231 207 232 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF619-207 - 481 8.3e-69 225.2 76.3 6 11 1.1e-08 1.1e-05 25.6 0.5 5 23 239 257 238 260 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF619-207 - 481 8.3e-69 225.2 76.3 7 11 2.7e-11 2.9e-08 33.8 1.3 3 24 265 286 264 288 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF619-207 - 481 8.3e-69 225.2 76.3 8 11 2.1e-06 0.0022 18.4 2.2 4 25 294 315 292 316 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF619-207 - 481 8.3e-69 225.2 76.3 9 11 3.1e-10 3.2e-07 30.5 0.4 5 25 323 343 320 344 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF619-207 - 481 8.3e-69 225.2 76.3 10 11 3.2e-12 3.4e-09 36.7 0.6 2 24 348 370 347 371 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF619-207 - 481 8.3e-69 225.2 76.3 11 11 0.16 1.7e+02 2.9 0.1 4 14 378 388 375 416 0.77 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZNF619-207 - 481 6.4e-42 139.7 80.7 1 10 0.0019 2 9.0 3.5 1 23 109 131 109 131 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF619-207 - 481 6.4e-42 139.7 80.7 2 10 1.3e-08 1.4e-05 25.3 2.8 1 23 137 159 137 159 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF619-207 - 481 6.4e-42 139.7 80.7 3 10 4.2e-08 4.4e-05 23.7 1.0 1 23 165 187 165 187 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF619-207 - 481 6.4e-42 139.7 80.7 4 10 9e-10 9.5e-07 28.9 1.1 1 23 193 215 193 215 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF619-207 - 481 6.4e-42 139.7 80.7 5 10 0.0029 3.1 8.4 3.8 1 23 221 243 221 243 0.89 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF619-207 - 481 6.4e-42 139.7 80.7 6 10 2.7e-07 0.00028 21.1 0.2 1 23 249 271 249 271 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF619-207 - 481 6.4e-42 139.7 80.7 7 10 8.9e-06 0.0093 16.4 2.8 1 23 277 299 277 299 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF619-207 - 481 6.4e-42 139.7 80.7 8 10 6.6e-05 0.07 13.6 3.4 1 23 305 327 305 327 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF619-207 - 481 6.4e-42 139.7 80.7 9 10 1.5e-08 1.6e-05 25.1 0.4 1 23 333 355 333 355 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF619-207 - 481 6.4e-42 139.7 80.7 10 10 1.7e-05 0.018 15.5 0.2 1 23 361 383 361 383 0.97 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZNF619-207 - 481 5e-25 86.0 77.9 1 10 0.17 1.8e+02 3.4 2.4 1 23 109 131 109 132 0.80 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF619-207 - 481 5e-25 86.0 77.9 2 10 1.8e-06 0.0019 18.8 1.7 1 23 137 159 137 160 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF619-207 - 481 5e-25 86.0 77.9 3 10 9.3e-06 0.0098 16.7 0.8 1 23 165 187 165 188 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF619-207 - 481 5e-25 86.0 77.9 4 10 1.1e-06 0.0012 19.5 0.6 1 23 193 215 193 216 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF619-207 - 481 5e-25 86.0 77.9 5 10 0.00018 0.19 12.7 3.3 1 23 221 243 221 244 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF619-207 - 481 5e-25 86.0 77.9 6 10 3.8e-05 0.04 14.7 0.3 1 23 249 271 249 272 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF619-207 - 481 5e-25 86.0 77.9 7 10 0.00031 0.33 11.9 2.8 1 23 277 299 277 300 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF619-207 - 481 5e-25 86.0 77.9 8 10 0.0052 5.4 8.1 3.2 1 23 305 327 305 328 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF619-207 - 481 5e-25 86.0 77.9 9 10 1.2e-05 0.013 16.3 0.5 1 23 333 355 333 356 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF619-207 - 481 5e-25 86.0 77.9 10 10 0.00041 0.44 11.5 0.5 1 23 361 383 361 384 0.93 C2H2-type zinc finger Zn-ribbon_8 PF09723.10 40 ZNF619-207 - 481 4.5e-11 42.7 58.1 1 9 0.00036 0.38 10.9 5.1 6 36 109 146 108 147 0.85 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF619-207 - 481 4.5e-11 42.7 58.1 2 9 6.2e-06 0.0065 16.6 3.8 6 35 137 173 136 177 0.92 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF619-207 - 481 4.5e-11 42.7 58.1 3 9 1.4e-05 0.014 15.5 4.6 6 34 193 228 192 232 0.91 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF619-207 - 481 4.5e-11 42.7 58.1 4 9 0.00075 0.79 9.9 7.4 6 35 221 257 220 261 0.86 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF619-207 - 481 4.5e-11 42.7 58.1 5 9 5.5e-05 0.058 13.5 4.5 6 38 249 288 248 290 0.92 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF619-207 - 481 4.5e-11 42.7 58.1 6 9 0.0017 1.8 8.8 4.7 6 32 277 310 276 314 0.88 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF619-207 - 481 4.5e-11 42.7 58.1 7 9 0.00011 0.11 12.6 5.6 6 38 305 344 304 346 0.89 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF619-207 - 481 4.5e-11 42.7 58.1 8 9 1e-05 0.011 15.8 5.6 6 36 333 370 332 373 0.91 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF619-207 - 481 4.5e-11 42.7 58.1 9 9 0.0065 6.9 6.9 0.7 6 16 361 371 360 382 0.83 Zinc ribbon domain zf-C2H2_6 PF13912.6 27 ZNF619-207 - 481 9.3e-10 38.3 68.6 1 10 3.3 3.4e+03 -1.8 0.5 2 8 109 115 109 116 0.91 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF619-207 - 481 9.3e-10 38.3 68.6 2 10 0.00028 0.29 11.2 1.0 2 13 137 148 137 159 0.88 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF619-207 - 481 9.3e-10 38.3 68.6 3 10 0.82 8.6e+02 0.1 0.5 2 12 165 175 165 176 0.86 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF619-207 - 481 9.3e-10 38.3 68.6 4 10 0.0009 0.95 9.5 0.5 2 18 193 209 193 216 0.79 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF619-207 - 481 9.3e-10 38.3 68.6 5 10 0.015 16 5.7 4.5 2 12 221 231 221 234 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF619-207 - 481 9.3e-10 38.3 68.6 6 10 1.6e-05 0.017 15.1 0.4 2 24 249 271 249 274 0.89 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF619-207 - 481 9.3e-10 38.3 68.6 7 10 0.0004 0.42 10.7 1.0 2 12 277 287 277 288 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF619-207 - 481 9.3e-10 38.3 68.6 8 10 0.007 7.4 6.7 0.3 2 12 305 315 304 315 0.92 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF619-207 - 481 9.3e-10 38.3 68.6 9 10 0.00016 0.16 12.0 0.9 2 12 333 343 333 344 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF619-207 - 481 9.3e-10 38.3 68.6 10 10 0.0006 0.63 10.1 0.8 2 12 361 371 361 371 0.94 C2H2-type zinc finger zf_UBZ PF18439.1 32 ZNF619-207 - 481 8.9e-07 28.4 58.2 1 10 0.047 50 3.6 1.9 3 24 109 125 107 128 0.84 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF619-207 - 481 8.9e-07 28.4 58.2 2 10 0.0024 2.6 7.7 0.2 3 13 137 147 135 156 0.80 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF619-207 - 481 8.9e-07 28.4 58.2 3 10 0.00068 0.72 9.5 0.5 3 21 165 184 163 184 0.87 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF619-207 - 481 8.9e-07 28.4 58.2 4 10 0.0077 8.2 6.1 0.1 3 15 193 205 191 212 0.80 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF619-207 - 481 8.9e-07 28.4 58.2 5 10 0.045 47 3.7 2.6 3 15 221 233 219 239 0.87 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF619-207 - 481 8.9e-07 28.4 58.2 6 10 0.002 2.1 8.0 0.2 3 16 249 262 247 268 0.80 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF619-207 - 481 8.9e-07 28.4 58.2 7 10 0.0045 4.8 6.9 0.5 3 21 277 296 275 300 0.81 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF619-207 - 481 8.9e-07 28.4 58.2 8 10 0.12 1.3e+02 2.3 0.6 3 16 305 318 303 323 0.86 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF619-207 - 481 8.9e-07 28.4 58.2 9 10 0.001 1.1 8.9 0.3 3 20 333 351 331 352 0.81 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF619-207 - 481 8.9e-07 28.4 58.2 10 10 0.0028 2.9 7.6 0.3 3 24 361 383 359 388 0.88 Ubiquitin-Binding Zinc Finger # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF619-207.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF619-207.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF619-207.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF619-207.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF619-207.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:11:08 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZNF619-208 - 532 3e-68 223.4 76.3 1 11 0.29 3.4e+02 1.9 0.2 14 24 159 169 144 170 0.78 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF619-208 - 532 3e-68 223.4 76.3 2 11 2.8e-09 3.4e-06 27.2 4.7 5 25 178 198 175 199 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF619-208 - 532 3e-68 223.4 76.3 3 11 2.9e-11 3.4e-08 33.5 0.3 2 25 203 226 202 227 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF619-208 - 532 3e-68 223.4 76.3 4 11 9.7e-09 1.2e-05 25.5 0.9 1 25 230 254 230 255 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF619-208 - 532 3e-68 223.4 76.3 5 11 1.3e-11 1.5e-08 34.7 2.8 2 25 259 282 258 283 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF619-208 - 532 3e-68 223.4 76.3 6 11 1e-08 1.2e-05 25.4 0.5 5 23 290 308 289 311 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF619-208 - 532 3e-68 223.4 76.3 7 11 2.7e-11 3.3e-08 33.6 1.3 3 24 316 337 315 339 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF619-208 - 532 3e-68 223.4 76.3 8 11 2.1e-06 0.0025 18.2 2.2 4 25 345 366 343 367 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF619-208 - 532 3e-68 223.4 76.3 9 11 3e-10 3.6e-07 30.3 0.4 5 25 374 394 371 395 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF619-208 - 532 3e-68 223.4 76.3 10 11 3.2e-12 3.8e-09 36.6 0.6 2 24 399 421 398 422 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF619-208 - 532 3e-68 223.4 76.3 11 11 0.16 1.9e+02 2.7 0.1 4 14 429 439 426 467 0.77 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZNF619-208 - 532 2.1e-41 138.1 80.7 1 10 0.0019 2.2 8.9 3.5 1 23 160 182 160 182 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF619-208 - 532 2.1e-41 138.1 80.7 2 10 1.3e-08 1.6e-05 25.1 2.8 1 23 188 210 188 210 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF619-208 - 532 2.1e-41 138.1 80.7 3 10 4.1e-08 4.9e-05 23.5 1.0 1 23 216 238 216 238 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF619-208 - 532 2.1e-41 138.1 80.7 4 10 9e-10 1.1e-06 28.8 1.1 1 23 244 266 244 266 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF619-208 - 532 2.1e-41 138.1 80.7 5 10 0.0029 3.5 8.3 3.8 1 23 272 294 272 294 0.89 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF619-208 - 532 2.1e-41 138.1 80.7 6 10 2.7e-07 0.00032 21.0 0.2 1 23 300 322 300 322 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF619-208 - 532 2.1e-41 138.1 80.7 7 10 8.8e-06 0.011 16.2 2.8 1 23 328 350 328 350 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF619-208 - 532 2.1e-41 138.1 80.7 8 10 6.6e-05 0.079 13.5 3.4 1 23 356 378 356 378 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF619-208 - 532 2.1e-41 138.1 80.7 9 10 1.5e-08 1.8e-05 24.9 0.4 1 23 384 406 384 406 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF619-208 - 532 2.1e-41 138.1 80.7 10 10 1.7e-05 0.021 15.3 0.2 1 23 412 434 412 434 0.97 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZNF619-208 - 532 1.7e-24 84.4 77.9 1 10 0.17 2.1e+02 3.2 2.4 1 23 160 182 160 183 0.80 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF619-208 - 532 1.7e-24 84.4 77.9 2 10 1.8e-06 0.0022 18.7 1.7 1 23 188 210 188 211 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF619-208 - 532 1.7e-24 84.4 77.9 3 10 9.2e-06 0.011 16.5 0.8 1 23 216 238 216 239 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF619-208 - 532 1.7e-24 84.4 77.9 4 10 1.1e-06 0.0013 19.4 0.6 1 23 244 266 244 267 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF619-208 - 532 1.7e-24 84.4 77.9 5 10 0.00018 0.21 12.5 3.3 1 23 272 294 272 295 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF619-208 - 532 1.7e-24 84.4 77.9 6 10 3.8e-05 0.046 14.6 0.3 1 23 300 322 300 323 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF619-208 - 532 1.7e-24 84.4 77.9 7 10 0.00031 0.37 11.7 2.8 1 23 328 350 328 351 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF619-208 - 532 1.7e-24 84.4 77.9 8 10 0.0051 6.1 8.0 3.2 1 23 356 378 356 379 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF619-208 - 532 1.7e-24 84.4 77.9 9 10 1.2e-05 0.014 16.2 0.5 1 23 384 406 384 407 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF619-208 - 532 1.7e-24 84.4 77.9 10 10 0.00041 0.49 11.4 0.5 1 23 412 434 412 435 0.93 C2H2-type zinc finger Zn-ribbon_8 PF09723.10 40 ZNF619-208 - 532 8.8e-11 41.7 57.9 1 9 0.00038 0.45 10.7 5.2 6 36 160 197 159 198 0.85 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF619-208 - 532 8.8e-11 41.7 57.9 2 9 6.3e-06 0.0075 16.4 3.9 6 35 188 224 187 228 0.92 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF619-208 - 532 8.8e-11 41.7 57.9 3 9 1.1e-05 0.013 15.6 4.3 6 34 244 279 243 283 0.91 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF619-208 - 532 8.8e-11 41.7 57.9 4 9 0.00084 1 9.6 7.5 6 35 272 308 271 312 0.86 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF619-208 - 532 8.8e-11 41.7 57.9 5 9 6.2e-05 0.074 13.2 4.7 6 38 300 339 299 341 0.92 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF619-208 - 532 8.8e-11 41.7 57.9 6 9 0.0018 2.1 8.5 4.7 6 32 328 361 326 364 0.88 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF619-208 - 532 8.8e-11 41.7 57.9 7 9 0.00011 0.13 12.4 5.6 6 38 356 395 355 397 0.89 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF619-208 - 532 8.8e-11 41.7 57.9 8 9 9.8e-06 0.012 15.7 5.6 6 36 384 421 382 424 0.91 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF619-208 - 532 8.8e-11 41.7 57.9 9 9 0.0061 7.3 6.8 0.7 6 16 412 422 410 434 0.84 Zinc ribbon domain zf-C2H2_6 PF13912.6 27 ZNF619-208 - 532 2.7e-09 36.8 68.6 1 10 3.2 3.8e+03 -2.0 0.5 2 8 160 166 160 167 0.91 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF619-208 - 532 2.7e-09 36.8 68.6 2 10 0.00028 0.33 11.0 1.0 2 13 188 199 188 210 0.88 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF619-208 - 532 2.7e-09 36.8 68.6 3 10 0.8 9.6e+02 -0.0 0.5 2 12 216 226 216 227 0.86 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF619-208 - 532 2.7e-09 36.8 68.6 4 10 0.0009 1.1 9.4 0.5 2 18 244 260 244 267 0.79 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF619-208 - 532 2.7e-09 36.8 68.6 5 10 0.015 17 5.5 4.5 2 12 272 282 272 285 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF619-208 - 532 2.7e-09 36.8 68.6 6 10 1.6e-05 0.019 15.0 0.4 2 24 300 322 300 325 0.89 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF619-208 - 532 2.7e-09 36.8 68.6 7 10 0.00039 0.47 10.5 1.0 2 12 328 338 328 339 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF619-208 - 532 2.7e-09 36.8 68.6 8 10 0.0069 8.2 6.5 0.3 2 12 356 366 355 366 0.92 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF619-208 - 532 2.7e-09 36.8 68.6 9 10 0.00015 0.18 11.8 0.9 2 12 384 394 384 395 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF619-208 - 532 2.7e-09 36.8 68.6 10 10 0.00059 0.71 9.9 0.8 2 12 412 422 412 422 0.94 C2H2-type zinc finger # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF619-208.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF619-208.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF619-208.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF619-208.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF619-208.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:11:08 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZNF619-209 - 481 8.3e-69 225.2 76.3 1 11 0.29 3e+02 2.1 0.2 14 24 108 118 93 119 0.78 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF619-209 - 481 8.3e-69 225.2 76.3 2 11 2.9e-09 3e-06 27.4 4.7 5 25 127 147 124 148 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF619-209 - 481 8.3e-69 225.2 76.3 3 11 2.9e-11 3e-08 33.7 0.3 2 25 152 175 151 176 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF619-209 - 481 8.3e-69 225.2 76.3 4 11 9.8e-09 1e-05 25.7 0.9 1 25 179 203 179 204 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF619-209 - 481 8.3e-69 225.2 76.3 5 11 1.3e-11 1.3e-08 34.8 2.8 2 25 208 231 207 232 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF619-209 - 481 8.3e-69 225.2 76.3 6 11 1.1e-08 1.1e-05 25.6 0.5 5 23 239 257 238 260 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF619-209 - 481 8.3e-69 225.2 76.3 7 11 2.7e-11 2.9e-08 33.8 1.3 3 24 265 286 264 288 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF619-209 - 481 8.3e-69 225.2 76.3 8 11 2.1e-06 0.0022 18.4 2.2 4 25 294 315 292 316 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF619-209 - 481 8.3e-69 225.2 76.3 9 11 3.1e-10 3.2e-07 30.5 0.4 5 25 323 343 320 344 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF619-209 - 481 8.3e-69 225.2 76.3 10 11 3.2e-12 3.4e-09 36.7 0.6 2 24 348 370 347 371 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF619-209 - 481 8.3e-69 225.2 76.3 11 11 0.16 1.7e+02 2.9 0.1 4 14 378 388 375 416 0.77 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZNF619-209 - 481 6.4e-42 139.7 80.7 1 10 0.0019 2 9.0 3.5 1 23 109 131 109 131 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF619-209 - 481 6.4e-42 139.7 80.7 2 10 1.3e-08 1.4e-05 25.3 2.8 1 23 137 159 137 159 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF619-209 - 481 6.4e-42 139.7 80.7 3 10 4.2e-08 4.4e-05 23.7 1.0 1 23 165 187 165 187 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF619-209 - 481 6.4e-42 139.7 80.7 4 10 9e-10 9.5e-07 28.9 1.1 1 23 193 215 193 215 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF619-209 - 481 6.4e-42 139.7 80.7 5 10 0.0029 3.1 8.4 3.8 1 23 221 243 221 243 0.89 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF619-209 - 481 6.4e-42 139.7 80.7 6 10 2.7e-07 0.00028 21.1 0.2 1 23 249 271 249 271 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF619-209 - 481 6.4e-42 139.7 80.7 7 10 8.9e-06 0.0093 16.4 2.8 1 23 277 299 277 299 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF619-209 - 481 6.4e-42 139.7 80.7 8 10 6.6e-05 0.07 13.6 3.4 1 23 305 327 305 327 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF619-209 - 481 6.4e-42 139.7 80.7 9 10 1.5e-08 1.6e-05 25.1 0.4 1 23 333 355 333 355 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF619-209 - 481 6.4e-42 139.7 80.7 10 10 1.7e-05 0.018 15.5 0.2 1 23 361 383 361 383 0.97 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZNF619-209 - 481 5e-25 86.0 77.9 1 10 0.17 1.8e+02 3.4 2.4 1 23 109 131 109 132 0.80 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF619-209 - 481 5e-25 86.0 77.9 2 10 1.8e-06 0.0019 18.8 1.7 1 23 137 159 137 160 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF619-209 - 481 5e-25 86.0 77.9 3 10 9.3e-06 0.0098 16.7 0.8 1 23 165 187 165 188 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF619-209 - 481 5e-25 86.0 77.9 4 10 1.1e-06 0.0012 19.5 0.6 1 23 193 215 193 216 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF619-209 - 481 5e-25 86.0 77.9 5 10 0.00018 0.19 12.7 3.3 1 23 221 243 221 244 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF619-209 - 481 5e-25 86.0 77.9 6 10 3.8e-05 0.04 14.7 0.3 1 23 249 271 249 272 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF619-209 - 481 5e-25 86.0 77.9 7 10 0.00031 0.33 11.9 2.8 1 23 277 299 277 300 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF619-209 - 481 5e-25 86.0 77.9 8 10 0.0052 5.4 8.1 3.2 1 23 305 327 305 328 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF619-209 - 481 5e-25 86.0 77.9 9 10 1.2e-05 0.013 16.3 0.5 1 23 333 355 333 356 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF619-209 - 481 5e-25 86.0 77.9 10 10 0.00041 0.44 11.5 0.5 1 23 361 383 361 384 0.93 C2H2-type zinc finger Zn-ribbon_8 PF09723.10 40 ZNF619-209 - 481 4.5e-11 42.7 58.1 1 9 0.00036 0.38 10.9 5.1 6 36 109 146 108 147 0.85 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF619-209 - 481 4.5e-11 42.7 58.1 2 9 6.2e-06 0.0065 16.6 3.8 6 35 137 173 136 177 0.92 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF619-209 - 481 4.5e-11 42.7 58.1 3 9 1.4e-05 0.014 15.5 4.6 6 34 193 228 192 232 0.91 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF619-209 - 481 4.5e-11 42.7 58.1 4 9 0.00075 0.79 9.9 7.4 6 35 221 257 220 261 0.86 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF619-209 - 481 4.5e-11 42.7 58.1 5 9 5.5e-05 0.058 13.5 4.5 6 38 249 288 248 290 0.92 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF619-209 - 481 4.5e-11 42.7 58.1 6 9 0.0017 1.8 8.8 4.7 6 32 277 310 276 314 0.88 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF619-209 - 481 4.5e-11 42.7 58.1 7 9 0.00011 0.11 12.6 5.6 6 38 305 344 304 346 0.89 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF619-209 - 481 4.5e-11 42.7 58.1 8 9 1e-05 0.011 15.8 5.6 6 36 333 370 332 373 0.91 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF619-209 - 481 4.5e-11 42.7 58.1 9 9 0.0065 6.9 6.9 0.7 6 16 361 371 360 382 0.83 Zinc ribbon domain zf-C2H2_6 PF13912.6 27 ZNF619-209 - 481 9.3e-10 38.3 68.6 1 10 3.3 3.4e+03 -1.8 0.5 2 8 109 115 109 116 0.91 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF619-209 - 481 9.3e-10 38.3 68.6 2 10 0.00028 0.29 11.2 1.0 2 13 137 148 137 159 0.88 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF619-209 - 481 9.3e-10 38.3 68.6 3 10 0.82 8.6e+02 0.1 0.5 2 12 165 175 165 176 0.86 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF619-209 - 481 9.3e-10 38.3 68.6 4 10 0.0009 0.95 9.5 0.5 2 18 193 209 193 216 0.79 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF619-209 - 481 9.3e-10 38.3 68.6 5 10 0.015 16 5.7 4.5 2 12 221 231 221 234 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF619-209 - 481 9.3e-10 38.3 68.6 6 10 1.6e-05 0.017 15.1 0.4 2 24 249 271 249 274 0.89 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF619-209 - 481 9.3e-10 38.3 68.6 7 10 0.0004 0.42 10.7 1.0 2 12 277 287 277 288 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF619-209 - 481 9.3e-10 38.3 68.6 8 10 0.007 7.4 6.7 0.3 2 12 305 315 304 315 0.92 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF619-209 - 481 9.3e-10 38.3 68.6 9 10 0.00016 0.16 12.0 0.9 2 12 333 343 333 344 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF619-209 - 481 9.3e-10 38.3 68.6 10 10 0.0006 0.63 10.1 0.8 2 12 361 371 361 371 0.94 C2H2-type zinc finger zf_UBZ PF18439.1 32 ZNF619-209 - 481 8.9e-07 28.4 58.2 1 10 0.047 50 3.6 1.9 3 24 109 125 107 128 0.84 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF619-209 - 481 8.9e-07 28.4 58.2 2 10 0.0024 2.6 7.7 0.2 3 13 137 147 135 156 0.80 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF619-209 - 481 8.9e-07 28.4 58.2 3 10 0.00068 0.72 9.5 0.5 3 21 165 184 163 184 0.87 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF619-209 - 481 8.9e-07 28.4 58.2 4 10 0.0077 8.2 6.1 0.1 3 15 193 205 191 212 0.80 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF619-209 - 481 8.9e-07 28.4 58.2 5 10 0.045 47 3.7 2.6 3 15 221 233 219 239 0.87 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF619-209 - 481 8.9e-07 28.4 58.2 6 10 0.002 2.1 8.0 0.2 3 16 249 262 247 268 0.80 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF619-209 - 481 8.9e-07 28.4 58.2 7 10 0.0045 4.8 6.9 0.5 3 21 277 296 275 300 0.81 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF619-209 - 481 8.9e-07 28.4 58.2 8 10 0.12 1.3e+02 2.3 0.6 3 16 305 318 303 323 0.86 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF619-209 - 481 8.9e-07 28.4 58.2 9 10 0.001 1.1 8.9 0.3 3 20 333 351 331 352 0.81 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF619-209 - 481 8.9e-07 28.4 58.2 10 10 0.0028 2.9 7.6 0.3 3 24 361 383 359 388 0.88 Ubiquitin-Binding Zinc Finger # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF619-209.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF619-209.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF619-209.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF619-209.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF619-209.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:11:09 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZNF619-210 - 567 6.2e-68 222.4 76.3 1 11 0.31 3.7e+02 1.8 0.2 14 24 194 204 179 205 0.78 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF619-210 - 567 6.2e-68 222.4 76.3 2 11 3.1e-09 3.7e-06 27.1 4.7 5 25 213 233 210 234 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF619-210 - 567 6.2e-68 222.4 76.3 3 11 3.1e-11 3.7e-08 33.4 0.3 2 25 238 261 237 262 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF619-210 - 567 6.2e-68 222.4 76.3 4 11 1e-08 1.3e-05 25.4 0.9 1 25 265 289 265 290 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF619-210 - 567 6.2e-68 222.4 76.3 5 11 1.4e-11 1.6e-08 34.6 2.8 2 25 294 317 293 318 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF619-210 - 567 6.2e-68 222.4 76.3 6 11 1.1e-08 1.3e-05 25.3 0.5 5 23 325 343 324 346 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF619-210 - 567 6.2e-68 222.4 76.3 7 11 2.9e-11 3.5e-08 33.5 1.3 3 24 351 372 350 374 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF619-210 - 567 6.2e-68 222.4 76.3 8 11 2.2e-06 0.0027 18.1 2.2 4 25 380 401 378 402 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF619-210 - 567 6.2e-68 222.4 76.3 9 11 3.3e-10 3.9e-07 30.2 0.4 5 25 409 429 406 430 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF619-210 - 567 6.2e-68 222.4 76.3 10 11 3.4e-12 4.1e-09 36.5 0.6 2 24 434 456 433 457 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF619-210 - 567 6.2e-68 222.4 76.3 11 11 0.18 2.1e+02 2.6 0.1 4 14 464 474 461 502 0.77 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZNF619-210 - 567 4.1e-41 137.2 80.7 1 10 0.002 2.4 8.8 3.5 1 23 195 217 195 217 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF619-210 - 567 4.1e-41 137.2 80.7 2 10 1.4e-08 1.7e-05 25.0 2.8 1 23 223 245 223 245 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF619-210 - 567 4.1e-41 137.2 80.7 3 10 4.5e-08 5.3e-05 23.4 1.0 1 23 251 273 251 273 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF619-210 - 567 4.1e-41 137.2 80.7 4 10 9.7e-10 1.2e-06 28.7 1.1 1 23 279 301 279 301 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF619-210 - 567 4.1e-41 137.2 80.7 5 10 0.0031 3.7 8.2 3.8 1 23 307 329 307 329 0.89 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF619-210 - 567 4.1e-41 137.2 80.7 6 10 2.9e-07 0.00035 20.9 0.2 1 23 335 357 335 357 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF619-210 - 567 4.1e-41 137.2 80.7 7 10 9.5e-06 0.011 16.1 2.8 1 23 363 385 363 385 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF619-210 - 567 4.1e-41 137.2 80.7 8 10 7.1e-05 0.085 13.3 3.4 1 23 391 413 391 413 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF619-210 - 567 4.1e-41 137.2 80.7 9 10 1.6e-08 1.9e-05 24.8 0.4 1 23 419 441 419 441 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF619-210 - 567 4.1e-41 137.2 80.7 10 10 1.9e-05 0.022 15.2 0.2 1 23 447 469 447 469 0.97 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZNF619-210 - 567 3.1e-24 83.6 77.9 1 10 0.19 2.2e+02 3.1 2.4 1 23 195 217 195 218 0.80 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF619-210 - 567 3.1e-24 83.6 77.9 2 10 2e-06 0.0024 18.6 1.7 1 23 223 245 223 246 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF619-210 - 567 3.1e-24 83.6 77.9 3 10 1e-05 0.012 16.4 0.8 1 23 251 273 251 274 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF619-210 - 567 3.1e-24 83.6 77.9 4 10 1.2e-06 0.0014 19.3 0.6 1 23 279 301 279 302 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF619-210 - 567 3.1e-24 83.6 77.9 5 10 0.00019 0.23 12.4 3.3 1 23 307 329 307 330 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF619-210 - 567 3.1e-24 83.6 77.9 6 10 4.1e-05 0.049 14.5 0.3 1 23 335 357 335 358 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF619-210 - 567 3.1e-24 83.6 77.9 7 10 0.00034 0.4 11.6 2.8 1 23 363 385 363 386 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF619-210 - 567 3.1e-24 83.6 77.9 8 10 0.0055 6.6 7.9 3.2 1 23 391 413 391 414 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF619-210 - 567 3.1e-24 83.6 77.9 9 10 1.3e-05 0.015 16.1 0.5 1 23 419 441 419 442 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF619-210 - 567 3.1e-24 83.6 77.9 10 10 0.00045 0.53 11.3 0.5 1 23 447 469 447 470 0.93 C2H2-type zinc finger Zn-ribbon_8 PF09723.10 40 ZNF619-210 - 567 5.1e-11 42.5 56.5 1 9 0.00035 0.42 10.8 4.9 6 36 195 232 194 233 0.85 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF619-210 - 567 5.1e-11 42.5 56.5 2 9 6.7e-06 0.008 16.3 3.8 6 35 223 259 222 263 0.92 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF619-210 - 567 5.1e-11 42.5 56.5 3 9 4.1e-06 0.0049 17.0 2.8 6 34 279 314 278 317 0.91 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF619-210 - 567 5.1e-11 42.5 56.5 4 9 0.00068 0.81 9.9 7.1 6 35 307 343 306 347 0.86 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF619-210 - 567 5.1e-11 42.5 56.5 5 9 5.2e-05 0.063 13.4 4.3 6 38 335 374 333 376 0.92 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF619-210 - 567 5.1e-11 42.5 56.5 6 9 0.0016 2 8.6 4.5 6 32 363 396 362 400 0.88 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF619-210 - 567 5.1e-11 42.5 56.5 7 9 0.0001 0.12 12.5 5.4 6 38 391 430 388 432 0.89 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF619-210 - 567 5.1e-11 42.5 56.5 8 9 1.1e-05 0.013 15.6 5.6 6 36 419 456 418 459 0.91 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF619-210 - 567 5.1e-11 42.5 56.5 9 9 0.007 8.3 6.6 0.7 6 16 447 457 446 467 0.83 Zinc ribbon domain zf-C2H2_6 PF13912.6 27 ZNF619-210 - 567 5.2e-09 35.9 68.6 1 10 3.4 4.1e+03 -2.1 0.5 2 8 195 201 195 202 0.91 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF619-210 - 567 5.2e-09 35.9 68.6 2 10 0.0003 0.35 10.9 1.0 2 13 223 234 223 245 0.88 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF619-210 - 567 5.2e-09 35.9 68.6 3 10 0.86 1e+03 -0.1 0.5 2 12 251 261 251 262 0.86 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF619-210 - 567 5.2e-09 35.9 68.6 4 10 0.00097 1.2 9.3 0.5 2 18 279 295 279 302 0.79 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF619-210 - 567 5.2e-09 35.9 68.6 5 10 0.016 19 5.4 4.5 2 12 307 317 307 320 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF619-210 - 567 5.2e-09 35.9 68.6 6 10 1.7e-05 0.02 14.9 0.4 2 24 335 357 335 360 0.89 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF619-210 - 567 5.2e-09 35.9 68.6 7 10 0.00042 0.51 10.4 1.0 2 12 363 373 363 374 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF619-210 - 567 5.2e-09 35.9 68.6 8 10 0.0074 8.8 6.4 0.3 2 12 391 401 390 401 0.92 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF619-210 - 567 5.2e-09 35.9 68.6 9 10 0.00017 0.2 11.7 0.9 2 12 419 429 419 430 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF619-210 - 567 5.2e-09 35.9 68.6 10 10 0.00064 0.76 9.9 0.8 2 12 447 457 447 457 0.94 C2H2-type zinc finger # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF619-210.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF619-210.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF619-210.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF619-210.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF619-210.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:11:09 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZNF620-201 - 422 2.7e-58 191.9 56.7 1 9 0.049 52 4.5 0.0 14 24 195 205 184 207 0.74 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF620-201 - 422 2.7e-58 191.9 56.7 2 9 2.3e-07 0.00024 21.4 8.2 4 25 213 234 210 235 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF620-201 - 422 2.7e-58 191.9 56.7 3 9 2.3e-09 2.4e-06 27.7 0.4 2 22 239 259 239 263 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF620-201 - 422 2.7e-58 191.9 56.7 4 9 1.9e-12 2e-09 37.5 0.1 1 26 266 291 266 291 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF620-201 - 422 2.7e-58 191.9 56.7 5 9 1.1e-07 0.00012 22.3 2.3 4 25 297 318 295 319 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF620-201 - 422 2.7e-58 191.9 56.7 6 9 4.7e-10 5e-07 29.9 0.8 2 23 323 344 322 347 0.90 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF620-201 - 422 2.7e-58 191.9 56.7 7 9 8.7e-13 9.1e-10 38.5 0.3 1 25 350 374 350 375 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF620-201 - 422 2.7e-58 191.9 56.7 8 9 5.6e-12 5.9e-09 35.9 0.5 3 25 380 402 379 402 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF620-201 - 422 2.7e-58 191.9 56.7 9 9 0.034 36 5.0 0.2 5 16 410 421 407 421 0.90 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZNF620-201 - 422 8.3e-32 107.9 55.7 1 8 0.0036 3.8 8.2 3.1 1 20 196 215 196 218 0.93 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF620-201 - 422 8.3e-32 107.9 55.7 2 8 6.6e-08 7e-05 23.1 0.6 1 23 224 246 224 246 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF620-201 - 422 8.3e-32 107.9 55.7 3 8 6.4e-06 0.0067 16.8 0.1 1 23 252 274 252 274 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF620-201 - 422 8.3e-32 107.9 55.7 4 8 5.9e-07 0.00062 20.1 1.0 1 23 280 302 280 302 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF620-201 - 422 8.3e-32 107.9 55.7 5 8 8.5e-06 0.009 16.4 3.7 1 23 308 330 308 330 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF620-201 - 422 8.3e-32 107.9 55.7 6 8 2.3e-07 0.00024 21.4 0.4 1 23 336 358 336 358 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF620-201 - 422 8.3e-32 107.9 55.7 7 8 3.5e-08 3.7e-05 23.9 0.2 1 23 364 386 364 386 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF620-201 - 422 8.3e-32 107.9 55.7 8 8 0.00033 0.35 11.4 1.9 1 23 392 414 392 414 0.93 Zinc finger, C2H2 type KRAB PF01352.27 42 ZNF620-201 - 422 7.1e-25 86.4 0.2 1 1 1.1e-27 1.2e-24 85.7 0.2 1 42 10 51 10 51 0.99 KRAB box zf-C2H2_4 PF13894.6 24 ZNF620-201 - 422 1.1e-20 72.5 56.7 1 8 0.0041 4.3 8.4 2.8 1 21 196 216 196 218 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF620-201 - 422 1.1e-20 72.5 56.7 2 8 3.1e-05 0.033 15.0 0.5 1 23 224 246 224 247 0.88 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF620-201 - 422 1.1e-20 72.5 56.7 3 8 2.3e-05 0.024 15.5 0.2 1 23 252 274 252 275 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF620-201 - 422 1.1e-20 72.5 56.7 4 8 1.3e-05 0.014 16.2 1.4 1 23 280 302 280 303 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF620-201 - 422 1.1e-20 72.5 56.7 5 8 0.0041 4.3 8.4 3.8 1 23 308 330 308 331 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF620-201 - 422 1.1e-20 72.5 56.7 6 8 7.8e-06 0.0082 16.9 0.4 1 23 336 358 336 359 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF620-201 - 422 1.1e-20 72.5 56.7 7 8 3.4e-05 0.036 14.9 0.3 1 23 364 386 364 387 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF620-201 - 422 1.1e-20 72.5 56.7 8 8 0.00076 0.8 10.7 2.3 1 23 392 414 392 415 0.86 C2H2-type zinc finger zf-C2H2_jaz PF12171.8 27 ZNF620-201 - 422 3.1e-16 59.2 33.3 1 8 0.0019 2 8.8 0.5 2 22 196 216 195 216 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF620-201 - 422 3.1e-16 59.2 33.3 2 8 0.0026 2.7 8.4 0.6 2 12 224 234 223 243 0.78 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF620-201 - 422 3.1e-16 59.2 33.3 3 8 8.4e-05 0.089 13.1 0.0 2 22 252 272 251 272 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF620-201 - 422 3.1e-16 59.2 33.3 4 8 2.9e-06 0.0031 17.8 0.1 2 22 280 300 279 300 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF620-201 - 422 3.1e-16 59.2 33.3 5 8 0.39 4.1e+02 1.4 1.8 2 22 308 328 307 328 0.91 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF620-201 - 422 3.1e-16 59.2 33.3 6 8 0.00029 0.3 11.4 0.0 2 22 336 356 335 356 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF620-201 - 422 3.1e-16 59.2 33.3 7 8 0.00077 0.81 10.1 0.2 2 22 364 384 363 384 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF620-201 - 422 3.1e-16 59.2 33.3 8 8 0.0067 7 7.1 0.2 2 12 392 402 391 402 0.90 Zinc-finger double-stranded RNA-binding zf-C2H2_6 PF13912.6 27 ZNF620-201 - 422 1.9e-15 56.4 49.1 1 8 0.39 4.1e+02 1.1 0.4 2 11 196 205 195 205 0.85 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF620-201 - 422 1.9e-15 56.4 49.1 2 8 0.00059 0.63 10.1 0.5 2 13 224 235 223 242 0.91 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF620-201 - 422 1.9e-15 56.4 49.1 3 8 1.7e-05 0.018 15.0 0.3 2 24 252 274 252 277 0.91 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF620-201 - 422 1.9e-15 56.4 49.1 4 8 0.00013 0.14 12.2 1.5 2 13 280 291 280 292 0.96 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF620-201 - 422 1.9e-15 56.4 49.1 5 8 0.0037 3.9 7.6 0.2 2 12 308 318 307 318 0.92 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF620-201 - 422 1.9e-15 56.4 49.1 6 8 9.9e-07 0.001 19.0 0.6 2 24 336 358 336 361 0.92 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF620-201 - 422 1.9e-15 56.4 49.1 7 8 0.00065 0.69 10.0 1.0 2 12 364 374 364 375 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF620-201 - 422 1.9e-15 56.4 49.1 8 8 0.00017 0.18 11.9 1.3 2 12 392 402 392 402 0.95 C2H2-type zinc finger Zn-ribbon_8 PF09723.10 40 ZNF620-201 - 422 8.2e-10 38.6 41.6 1 6 0.0045 4.7 7.4 2.0 6 29 196 217 195 222 0.77 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF620-201 - 422 8.2e-10 38.6 41.6 2 6 3.2e-05 0.034 14.3 0.7 6 34 224 259 223 266 0.84 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF620-201 - 422 8.2e-10 38.6 41.6 3 6 0.0014 1.5 9.0 4.8 6 32 280 313 279 317 0.87 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF620-201 - 422 8.2e-10 38.6 41.6 4 6 7.6e-05 0.08 13.1 6.3 6 36 308 345 307 347 0.87 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF620-201 - 422 8.2e-10 38.6 41.6 5 6 3.2e-05 0.034 14.3 2.7 6 35 364 400 363 403 0.91 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF620-201 - 422 8.2e-10 38.6 41.6 6 6 0.0093 9.8 6.4 0.3 6 16 392 402 391 417 0.83 Zinc ribbon domain # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF620-201.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF620-201.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF620-201.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF620-201.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF620-201.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:11:10 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZNF620-202 - 308 4e-58 191.4 62.1 1 9 0.037 35 5.1 0.0 14 24 81 91 70 93 0.74 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF620-202 - 308 4e-58 191.4 62.1 2 9 1.7e-07 0.00016 21.9 8.2 4 25 99 120 96 121 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF620-202 - 308 4e-58 191.4 62.1 3 9 1.7e-09 1.6e-06 28.2 0.4 2 22 125 145 125 149 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF620-202 - 308 4e-58 191.4 62.1 4 9 1.4e-12 1.3e-09 38.0 0.1 1 26 152 177 152 177 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF620-202 - 308 4e-58 191.4 62.1 5 9 8.6e-08 8.1e-05 22.9 2.3 4 25 183 204 181 205 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF620-202 - 308 4e-58 191.4 62.1 6 9 3.6e-10 3.4e-07 30.4 0.8 2 23 209 230 208 233 0.90 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF620-202 - 308 4e-58 191.4 62.1 7 9 6.5e-13 6.1e-10 39.1 0.3 1 25 236 260 236 261 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF620-202 - 308 4e-58 191.4 62.1 8 9 4.2e-12 4e-09 36.5 0.5 3 25 266 288 265 288 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF620-202 - 308 4e-58 191.4 62.1 9 9 0.027 25 5.5 0.2 5 16 296 307 293 307 0.90 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZNF620-202 - 308 4.2e-33 112.0 55.7 1 8 0.0027 2.5 8.7 3.1 1 20 82 101 82 104 0.93 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF620-202 - 308 4.2e-33 112.0 55.7 2 8 5e-08 4.7e-05 23.6 0.6 1 23 110 132 110 132 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF620-202 - 308 4.2e-33 112.0 55.7 3 8 4.8e-06 0.0045 17.4 0.1 1 23 138 160 138 160 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF620-202 - 308 4.2e-33 112.0 55.7 4 8 4.4e-07 0.00042 20.6 1.0 1 23 166 188 166 188 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF620-202 - 308 4.2e-33 112.0 55.7 5 8 6.4e-06 0.006 17.0 3.7 1 23 194 216 194 216 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF620-202 - 308 4.2e-33 112.0 55.7 6 8 1.7e-07 0.00016 21.9 0.4 1 23 222 244 222 244 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF620-202 - 308 4.2e-33 112.0 55.7 7 8 2.6e-08 2.5e-05 24.5 0.2 1 23 250 272 250 272 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF620-202 - 308 4.2e-33 112.0 55.7 8 8 0.00025 0.24 11.9 1.9 1 23 278 300 278 300 0.93 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZNF620-202 - 308 6.3e-20 70.2 63.3 1 8 0.0031 2.9 9.0 2.8 1 21 82 102 82 104 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF620-202 - 308 6.3e-20 70.2 63.3 2 8 2.3e-05 0.022 15.6 0.5 1 23 110 132 110 133 0.88 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF620-202 - 308 6.3e-20 70.2 63.3 3 8 1.7e-05 0.016 16.0 0.2 1 23 138 160 138 161 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF620-202 - 308 6.3e-20 70.2 63.3 4 8 9.6e-06 0.0091 16.8 1.4 1 23 166 188 166 189 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF620-202 - 308 6.3e-20 70.2 63.3 5 8 0.0031 2.9 9.0 3.8 1 23 194 216 194 217 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF620-202 - 308 6.3e-20 70.2 63.3 6 8 5.8e-06 0.0055 17.4 0.4 1 23 222 244 222 245 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF620-202 - 308 6.3e-20 70.2 63.3 7 8 2.6e-05 0.024 15.4 0.3 1 23 250 272 250 273 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF620-202 - 308 6.3e-20 70.2 63.3 8 8 0.00057 0.53 11.3 2.3 1 23 278 300 278 301 0.86 C2H2-type zinc finger zf-C2H2_jaz PF12171.8 27 ZNF620-202 - 308 1.6e-17 63.3 33.3 1 8 0.0015 1.4 9.3 0.5 2 22 82 102 81 102 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF620-202 - 308 1.6e-17 63.3 33.3 2 8 0.002 1.9 8.9 0.6 2 12 110 120 109 129 0.78 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF620-202 - 308 1.6e-17 63.3 33.3 3 8 6.4e-05 0.061 13.6 0.0 2 22 138 158 137 158 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF620-202 - 308 1.6e-17 63.3 33.3 4 8 2.2e-06 0.0021 18.3 0.1 2 22 166 186 165 186 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF620-202 - 308 1.6e-17 63.3 33.3 5 8 0.3 2.8e+02 2.0 1.9 2 22 194 214 193 214 0.91 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF620-202 - 308 1.6e-17 63.3 33.3 6 8 0.00022 0.21 11.9 0.0 2 22 222 242 221 242 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF620-202 - 308 1.6e-17 63.3 33.3 7 8 0.00058 0.55 10.6 0.2 2 22 250 270 249 270 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF620-202 - 308 1.6e-17 63.3 33.3 8 8 0.0052 4.9 7.6 0.2 2 12 278 288 277 288 0.90 Zinc-finger double-stranded RNA-binding zf-C2H2_6 PF13912.6 27 ZNF620-202 - 308 3.8e-14 52.3 57.4 1 8 0.3 2.9e+02 1.6 0.4 2 11 82 91 81 91 0.85 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF620-202 - 308 3.8e-14 52.3 57.4 2 8 0.00046 0.43 10.6 0.5 2 13 110 121 109 128 0.91 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF620-202 - 308 3.8e-14 52.3 57.4 3 8 1.3e-05 0.012 15.6 0.3 2 24 138 160 138 163 0.91 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF620-202 - 308 3.8e-14 52.3 57.4 4 8 0.0001 0.098 12.7 1.5 2 13 166 177 166 178 0.96 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF620-202 - 308 3.8e-14 52.3 57.4 5 8 0.0029 2.7 8.1 0.2 2 12 194 204 193 204 0.92 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF620-202 - 308 3.8e-14 52.3 57.4 6 8 7.5e-07 0.0007 19.5 0.6 2 24 222 244 222 247 0.92 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF620-202 - 308 3.8e-14 52.3 57.4 7 8 0.00051 0.48 10.5 1.0 2 12 250 260 250 261 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF620-202 - 308 3.8e-14 52.3 57.4 8 8 0.00013 0.12 12.4 1.3 2 12 278 288 278 288 0.95 C2H2-type zinc finger Zn-ribbon_8 PF09723.10 40 ZNF620-202 - 308 1.2e-10 41.3 41.7 1 6 0.0034 3.2 7.9 2.0 6 29 82 103 81 108 0.77 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF620-202 - 308 1.2e-10 41.3 41.7 2 6 2.4e-05 0.023 14.8 0.7 6 34 110 145 109 150 0.84 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF620-202 - 308 1.2e-10 41.3 41.7 3 6 0.0013 1.2 9.3 5.1 6 32 166 199 165 203 0.87 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF620-202 - 308 1.2e-10 41.3 41.7 4 6 6.3e-05 0.06 13.5 6.5 6 36 194 231 193 233 0.87 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF620-202 - 308 1.2e-10 41.3 41.7 5 6 4.1e-05 0.039 14.1 3.5 6 35 250 286 249 288 0.90 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF620-202 - 308 1.2e-10 41.3 41.7 6 6 0.0072 6.8 6.9 0.4 6 16 278 288 276 304 0.82 Zinc ribbon domain zf_UBZ PF18439.1 32 ZNF620-202 - 308 2.3e-07 30.3 35.3 1 9 9.1 8.6e+03 -3.5 0.0 19 23 11 15 9 15 0.82 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF620-202 - 308 2.3e-07 30.3 35.3 2 9 0.047 44 3.8 0.2 2 13 81 92 81 101 0.78 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF620-202 - 308 2.3e-07 30.3 35.3 3 9 0.0078 7.4 6.3 0.1 2 12 109 119 108 125 0.87 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF620-202 - 308 2.3e-07 30.3 35.3 4 9 0.0017 1.6 8.4 0.1 3 21 138 157 136 157 0.89 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF620-202 - 308 2.3e-07 30.3 35.3 5 9 0.00039 0.37 10.4 0.2 3 24 166 188 164 189 0.85 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF620-202 - 308 2.3e-07 30.3 35.3 6 9 0.099 94 2.7 0.8 3 18 194 210 192 213 0.79 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF620-202 - 308 2.3e-07 30.3 35.3 7 9 0.00016 0.15 11.7 0.2 3 21 222 241 220 241 0.93 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF620-202 - 308 2.3e-07 30.3 35.3 8 9 0.0094 8.8 6.0 0.2 3 20 250 268 248 269 0.77 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF620-202 - 308 2.3e-07 30.3 35.3 9 9 0.13 1.2e+02 2.4 0.2 3 13 278 288 276 289 0.88 Ubiquitin-Binding Zinc Finger # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF620-202.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF620-202.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF620-202.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF620-202.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF620-202.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:11:10 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF620-203.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF620-203.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF620-203.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF620-203.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF620-203.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:11:10 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF620-204.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF620-204.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF620-204.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF620-204.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF620-204.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:11:11 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZNF620-205 - 383 9.2e-59 193.4 56.7 1 9 0.044 46 4.7 0.0 14 24 156 166 145 168 0.74 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF620-205 - 383 9.2e-59 193.4 56.7 2 9 2e-07 0.00021 21.5 8.2 4 25 174 195 171 196 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF620-205 - 383 9.2e-59 193.4 56.7 3 9 2e-09 2.2e-06 27.9 0.4 2 22 200 220 200 224 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF620-205 - 383 9.2e-59 193.4 56.7 4 9 1.7e-12 1.7e-09 37.6 0.1 1 26 227 252 227 252 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF620-205 - 383 9.2e-59 193.4 56.7 5 9 1e-07 0.00011 22.5 2.3 4 25 258 279 256 280 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF620-205 - 383 9.2e-59 193.4 56.7 6 9 4.2e-10 4.4e-07 30.0 0.8 2 23 284 305 283 308 0.90 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF620-205 - 383 9.2e-59 193.4 56.7 7 9 7.7e-13 8.1e-10 38.7 0.3 1 25 311 335 311 336 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF620-205 - 383 9.2e-59 193.4 56.7 8 9 5e-12 5.3e-09 36.1 0.5 3 25 341 363 340 363 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF620-205 - 383 9.2e-59 193.4 56.7 9 9 0.031 32 5.2 0.2 5 16 371 382 368 382 0.90 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZNF620-205 - 383 3.2e-32 109.2 55.7 1 8 0.0032 3.3 8.3 3.1 1 20 157 176 157 179 0.93 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF620-205 - 383 3.2e-32 109.2 55.7 2 8 5.9e-08 6.2e-05 23.2 0.6 1 23 185 207 185 207 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF620-205 - 383 3.2e-32 109.2 55.7 3 8 5.6e-06 0.0059 17.0 0.1 1 23 213 235 213 235 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF620-205 - 383 3.2e-32 109.2 55.7 4 8 5.2e-07 0.00055 20.2 1.0 1 23 241 263 241 263 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF620-205 - 383 3.2e-32 109.2 55.7 5 8 7.5e-06 0.0079 16.6 3.7 1 23 269 291 269 291 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF620-205 - 383 3.2e-32 109.2 55.7 6 8 2e-07 0.00021 21.5 0.4 1 23 297 319 297 319 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF620-205 - 383 3.2e-32 109.2 55.7 7 8 3.1e-08 3.3e-05 24.1 0.2 1 23 325 347 325 347 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF620-205 - 383 3.2e-32 109.2 55.7 8 8 0.0003 0.31 11.6 1.9 1 23 353 375 353 375 0.93 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZNF620-205 - 383 4.3e-21 73.8 56.7 1 8 0.0036 3.8 8.6 2.8 1 21 157 177 157 179 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF620-205 - 383 4.3e-21 73.8 56.7 2 8 2.8e-05 0.029 15.2 0.5 1 23 185 207 185 208 0.88 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF620-205 - 383 4.3e-21 73.8 56.7 3 8 2e-05 0.021 15.6 0.2 1 23 213 235 213 236 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF620-205 - 383 4.3e-21 73.8 56.7 4 8 1.1e-05 0.012 16.4 1.4 1 23 241 263 241 264 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF620-205 - 383 4.3e-21 73.8 56.7 5 8 0.0036 3.8 8.6 3.8 1 23 269 291 269 292 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF620-205 - 383 4.3e-21 73.8 56.7 6 8 6.9e-06 0.0073 17.1 0.4 1 23 297 319 297 320 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF620-205 - 383 4.3e-21 73.8 56.7 7 8 3e-05 0.032 15.1 0.3 1 23 325 347 325 348 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF620-205 - 383 4.3e-21 73.8 56.7 8 8 0.00067 0.71 10.9 2.3 1 23 353 375 353 376 0.86 C2H2-type zinc finger zf-C2H2_jaz PF12171.8 27 ZNF620-205 - 383 1.3e-16 60.4 33.3 1 8 0.0017 1.8 8.9 0.5 2 22 157 177 156 177 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF620-205 - 383 1.3e-16 60.4 33.3 2 8 0.0023 2.4 8.5 0.6 2 12 185 195 184 204 0.78 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF620-205 - 383 1.3e-16 60.4 33.3 3 8 7.5e-05 0.079 13.3 0.0 2 22 213 233 212 233 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF620-205 - 383 1.3e-16 60.4 33.3 4 8 2.6e-06 0.0027 17.9 0.1 2 22 241 261 240 261 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF620-205 - 383 1.3e-16 60.4 33.3 5 8 0.35 3.7e+02 1.6 1.8 2 22 269 289 268 289 0.91 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF620-205 - 383 1.3e-16 60.4 33.3 6 8 0.00026 0.27 11.6 0.0 2 22 297 317 296 317 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF620-205 - 383 1.3e-16 60.4 33.3 7 8 0.00068 0.72 10.2 0.2 2 22 325 345 324 345 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF620-205 - 383 1.3e-16 60.4 33.3 8 8 0.006 6.3 7.2 0.2 2 12 353 363 352 363 0.90 Zinc-finger double-stranded RNA-binding zf-C2H2_6 PF13912.6 27 ZNF620-205 - 383 3.3e-13 49.3 57.5 1 8 0.35 3.7e+02 1.3 0.4 2 11 157 166 156 166 0.85 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF620-205 - 383 3.3e-13 49.3 57.5 2 8 0.00053 0.56 10.3 0.5 2 13 185 196 184 203 0.91 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF620-205 - 383 3.3e-13 49.3 57.5 3 8 1.5e-05 0.016 15.2 0.3 2 24 213 235 213 238 0.91 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF620-205 - 383 3.3e-13 49.3 57.5 4 8 0.00012 0.13 12.3 1.5 2 13 241 252 241 253 0.96 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF620-205 - 383 3.3e-13 49.3 57.5 5 8 0.0033 3.5 7.7 0.2 2 12 269 279 268 279 0.92 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF620-205 - 383 3.3e-13 49.3 57.5 6 8 8.8e-07 0.00092 19.1 0.6 2 24 297 319 297 322 0.92 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF620-205 - 383 3.3e-13 49.3 57.5 7 8 0.00058 0.62 10.1 1.0 2 12 325 335 325 336 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF620-205 - 383 3.3e-13 49.3 57.5 8 8 0.00015 0.16 12.0 1.3 2 12 353 363 353 363 0.95 C2H2-type zinc finger Zn-ribbon_8 PF09723.10 40 ZNF620-205 - 383 3.7e-10 39.7 41.5 1 6 0.004 4.2 7.6 2.0 6 29 157 178 156 183 0.77 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF620-205 - 383 3.7e-10 39.7 41.5 2 6 2.2e-05 0.023 14.8 0.3 6 34 185 220 184 229 0.85 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF620-205 - 383 3.7e-10 39.7 41.5 3 6 0.0012 1.3 9.2 4.9 6 32 241 274 239 279 0.87 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF620-205 - 383 3.7e-10 39.7 41.5 4 6 6.4e-05 0.068 13.3 6.3 6 36 269 306 268 308 0.87 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF620-205 - 383 3.7e-10 39.7 41.5 5 6 3.5e-05 0.036 14.2 3.0 6 35 325 361 324 363 0.90 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF620-205 - 383 3.7e-10 39.7 41.5 6 6 0.0086 9.1 6.5 0.4 6 16 353 363 352 378 0.83 Zinc ribbon domain zf_UBZ PF18439.1 32 ZNF620-205 - 383 4.8e-07 29.3 33.4 1 8 0.054 57 3.4 0.2 2 13 156 167 156 176 0.78 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF620-205 - 383 4.8e-07 29.3 33.4 2 8 0.009 9.5 5.9 0.1 2 12 184 194 183 200 0.87 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF620-205 - 383 4.8e-07 29.3 33.4 3 8 0.002 2.1 8.0 0.1 3 21 213 232 211 232 0.89 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF620-205 - 383 4.8e-07 29.3 33.4 4 8 0.00045 0.48 10.1 0.2 3 24 241 263 239 264 0.85 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF620-205 - 383 4.8e-07 29.3 33.4 5 8 0.12 1.2e+02 2.4 0.8 3 18 269 285 267 288 0.79 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF620-205 - 383 4.8e-07 29.3 33.4 6 8 0.00018 0.19 11.3 0.2 3 21 297 316 295 316 0.93 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF620-205 - 383 4.8e-07 29.3 33.4 7 8 0.011 11 5.7 0.2 3 20 325 343 323 344 0.77 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF620-205 - 383 4.8e-07 29.3 33.4 8 8 0.14 1.5e+02 2.1 0.2 3 13 353 363 351 364 0.88 Ubiquitin-Binding Zinc Finger # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF620-205.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF620-205.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF620-205.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF620-205.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF620-205.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:11:11 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- KRAB PF01352.27 42 ZNF621-201 - 157 1.4e-24 85.4 0.1 1 1 1.2e-28 2.1e-24 84.9 0.1 1 42 10 51 10 51 0.99 KRAB box # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF621-201.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF621-201.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF621-201.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF621-201.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF621-201.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:11:11 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZNF621-202 - 439 8.7e-52 171.4 45.8 1 8 0.0024 2.4 8.7 0.3 11 24 147 160 144 162 0.86 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF621-202 - 439 8.7e-52 171.4 45.8 2 8 2.7e-11 2.7e-08 33.9 1.6 2 26 166 190 165 190 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF621-202 - 439 8.7e-52 171.4 45.8 3 8 4.4e-07 0.00044 20.6 0.2 5 22 197 214 195 218 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF621-202 - 439 8.7e-52 171.4 45.8 4 8 1.3e-12 1.3e-09 38.0 0.5 1 25 221 245 221 246 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF621-202 - 439 8.7e-52 171.4 45.8 5 8 4.5e-08 4.5e-05 23.7 1.4 2 25 250 273 249 274 0.90 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF621-202 - 439 8.7e-52 171.4 45.8 6 8 1.9e-11 1.9e-08 34.4 0.7 5 25 281 301 278 302 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF621-202 - 439 8.7e-52 171.4 45.8 7 8 9.9e-12 9.9e-09 35.2 1.2 4 25 308 329 307 329 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF621-202 - 439 8.7e-52 171.4 45.8 8 8 0.024 24 5.6 0.0 2 15 334 348 333 362 0.68 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZNF621-202 - 439 6.8e-31 105.0 42.8 1 7 2.8e-08 2.8e-05 24.3 1.1 1 23 151 173 151 173 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF621-202 - 439 6.8e-31 105.0 42.8 2 7 9.4e-06 0.0093 16.4 2.4 1 23 179 201 179 201 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF621-202 - 439 6.8e-31 105.0 42.8 3 7 5e-07 0.0005 20.4 0.2 1 23 207 229 207 229 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF621-202 - 439 6.8e-31 105.0 42.8 4 7 4.7e-08 4.7e-05 23.6 0.4 1 23 235 257 235 257 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF621-202 - 439 6.8e-31 105.0 42.8 5 7 5.6e-05 0.056 13.9 1.6 1 23 263 285 263 285 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF621-202 - 439 6.8e-31 105.0 42.8 6 7 3.8e-06 0.0038 17.6 0.3 1 23 291 313 291 313 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF621-202 - 439 6.8e-31 105.0 42.8 7 7 1.8e-05 0.018 15.5 0.4 1 23 319 341 319 341 0.98 Zinc finger, C2H2 type KRAB PF01352.27 42 ZNF621-202 - 439 6.6e-24 83.3 0.1 1 1 1.1e-26 1e-23 82.6 0.1 1 42 10 51 10 51 0.99 KRAB box zf-C2H2_4 PF13894.6 24 ZNF621-202 - 439 1.8e-17 62.5 43.6 1 7 1.1e-05 0.011 16.5 0.8 1 23 151 173 151 174 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF621-202 - 439 1.8e-17 62.5 43.6 2 7 8.6e-06 0.0085 16.8 1.8 1 23 179 201 179 202 0.97 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF621-202 - 439 1.8e-17 62.5 43.6 3 7 2e-05 0.02 15.7 0.2 1 23 207 229 207 230 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF621-202 - 439 1.8e-17 62.5 43.6 4 7 1.8e-05 0.018 15.8 0.5 1 23 235 257 235 258 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF621-202 - 439 1.8e-17 62.5 43.6 5 7 0.063 63 4.8 2.2 1 23 263 285 263 286 0.90 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF621-202 - 439 1.8e-17 62.5 43.6 6 7 0.0033 3.2 8.8 0.3 1 23 291 313 291 314 0.74 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF621-202 - 439 1.8e-17 62.5 43.6 7 7 0.00045 0.45 11.5 0.6 1 23 319 341 319 342 0.86 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF621-202 - 439 7.7e-13 48.1 43.7 1 7 0.00046 0.46 10.5 0.8 2 20 151 169 150 175 0.79 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF621-202 - 439 7.7e-13 48.1 43.7 2 7 0.0002 0.2 11.7 2.9 2 24 179 201 179 202 0.83 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF621-202 - 439 7.7e-13 48.1 43.7 3 7 5.9e-06 0.0059 16.6 0.6 2 24 207 229 207 232 0.92 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF621-202 - 439 7.7e-13 48.1 43.7 4 7 0.0003 0.29 11.2 0.6 2 12 235 245 235 247 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF621-202 - 439 7.7e-13 48.1 43.7 5 7 0.014 14 5.8 0.2 2 11 263 272 262 273 0.89 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF621-202 - 439 7.7e-13 48.1 43.7 6 7 0.0026 2.6 8.2 0.6 2 11 291 300 291 302 0.92 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF621-202 - 439 7.7e-13 48.1 43.7 7 7 0.00032 0.32 11.0 0.7 2 12 319 329 319 341 0.91 C2H2-type zinc finger Zn-ribbon_8 PF09723.10 40 ZNF621-202 - 439 1.3e-09 38.0 29.6 1 5 3.3e-06 0.0032 17.5 2.1 6 35 151 187 150 192 0.88 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF621-202 - 439 1.3e-09 38.0 29.6 2 5 6.8e-06 0.0068 16.5 2.3 6 38 207 246 206 248 0.94 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF621-202 - 439 1.3e-09 38.0 29.6 3 5 0.00015 0.15 12.2 4.2 6 38 263 302 261 305 0.87 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF621-202 - 439 1.3e-09 38.0 29.6 4 5 1.7e-05 0.017 15.2 3.4 6 35 291 327 289 330 0.89 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF621-202 - 439 1.3e-09 38.0 29.6 5 5 0.018 18 5.6 0.3 6 16 319 329 317 347 0.80 Zinc ribbon domain # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF621-202.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF621-202.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF621-202.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF621-202.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF621-202.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:11:12 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZNF621-203 - 439 8.7e-52 171.4 45.8 1 8 0.0024 2.4 8.7 0.3 11 24 147 160 144 162 0.86 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF621-203 - 439 8.7e-52 171.4 45.8 2 8 2.7e-11 2.7e-08 33.9 1.6 2 26 166 190 165 190 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF621-203 - 439 8.7e-52 171.4 45.8 3 8 4.4e-07 0.00044 20.6 0.2 5 22 197 214 195 218 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF621-203 - 439 8.7e-52 171.4 45.8 4 8 1.3e-12 1.3e-09 38.0 0.5 1 25 221 245 221 246 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF621-203 - 439 8.7e-52 171.4 45.8 5 8 4.5e-08 4.5e-05 23.7 1.4 2 25 250 273 249 274 0.90 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF621-203 - 439 8.7e-52 171.4 45.8 6 8 1.9e-11 1.9e-08 34.4 0.7 5 25 281 301 278 302 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF621-203 - 439 8.7e-52 171.4 45.8 7 8 9.9e-12 9.9e-09 35.2 1.2 4 25 308 329 307 329 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF621-203 - 439 8.7e-52 171.4 45.8 8 8 0.024 24 5.6 0.0 2 15 334 348 333 362 0.68 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZNF621-203 - 439 6.8e-31 105.0 42.8 1 7 2.8e-08 2.8e-05 24.3 1.1 1 23 151 173 151 173 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF621-203 - 439 6.8e-31 105.0 42.8 2 7 9.4e-06 0.0093 16.4 2.4 1 23 179 201 179 201 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF621-203 - 439 6.8e-31 105.0 42.8 3 7 5e-07 0.0005 20.4 0.2 1 23 207 229 207 229 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF621-203 - 439 6.8e-31 105.0 42.8 4 7 4.7e-08 4.7e-05 23.6 0.4 1 23 235 257 235 257 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF621-203 - 439 6.8e-31 105.0 42.8 5 7 5.6e-05 0.056 13.9 1.6 1 23 263 285 263 285 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF621-203 - 439 6.8e-31 105.0 42.8 6 7 3.8e-06 0.0038 17.6 0.3 1 23 291 313 291 313 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF621-203 - 439 6.8e-31 105.0 42.8 7 7 1.8e-05 0.018 15.5 0.4 1 23 319 341 319 341 0.98 Zinc finger, C2H2 type KRAB PF01352.27 42 ZNF621-203 - 439 6.6e-24 83.3 0.1 1 1 1.1e-26 1e-23 82.6 0.1 1 42 10 51 10 51 0.99 KRAB box zf-C2H2_4 PF13894.6 24 ZNF621-203 - 439 1.8e-17 62.5 43.6 1 7 1.1e-05 0.011 16.5 0.8 1 23 151 173 151 174 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF621-203 - 439 1.8e-17 62.5 43.6 2 7 8.6e-06 0.0085 16.8 1.8 1 23 179 201 179 202 0.97 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF621-203 - 439 1.8e-17 62.5 43.6 3 7 2e-05 0.02 15.7 0.2 1 23 207 229 207 230 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF621-203 - 439 1.8e-17 62.5 43.6 4 7 1.8e-05 0.018 15.8 0.5 1 23 235 257 235 258 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF621-203 - 439 1.8e-17 62.5 43.6 5 7 0.063 63 4.8 2.2 1 23 263 285 263 286 0.90 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF621-203 - 439 1.8e-17 62.5 43.6 6 7 0.0033 3.2 8.8 0.3 1 23 291 313 291 314 0.74 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF621-203 - 439 1.8e-17 62.5 43.6 7 7 0.00045 0.45 11.5 0.6 1 23 319 341 319 342 0.86 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF621-203 - 439 7.7e-13 48.1 43.7 1 7 0.00046 0.46 10.5 0.8 2 20 151 169 150 175 0.79 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF621-203 - 439 7.7e-13 48.1 43.7 2 7 0.0002 0.2 11.7 2.9 2 24 179 201 179 202 0.83 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF621-203 - 439 7.7e-13 48.1 43.7 3 7 5.9e-06 0.0059 16.6 0.6 2 24 207 229 207 232 0.92 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF621-203 - 439 7.7e-13 48.1 43.7 4 7 0.0003 0.29 11.2 0.6 2 12 235 245 235 247 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF621-203 - 439 7.7e-13 48.1 43.7 5 7 0.014 14 5.8 0.2 2 11 263 272 262 273 0.89 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF621-203 - 439 7.7e-13 48.1 43.7 6 7 0.0026 2.6 8.2 0.6 2 11 291 300 291 302 0.92 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF621-203 - 439 7.7e-13 48.1 43.7 7 7 0.00032 0.32 11.0 0.7 2 12 319 329 319 341 0.91 C2H2-type zinc finger Zn-ribbon_8 PF09723.10 40 ZNF621-203 - 439 1.3e-09 38.0 29.6 1 5 3.3e-06 0.0032 17.5 2.1 6 35 151 187 150 192 0.88 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF621-203 - 439 1.3e-09 38.0 29.6 2 5 6.8e-06 0.0068 16.5 2.3 6 38 207 246 206 248 0.94 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF621-203 - 439 1.3e-09 38.0 29.6 3 5 0.00015 0.15 12.2 4.2 6 38 263 302 261 305 0.87 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF621-203 - 439 1.3e-09 38.0 29.6 4 5 1.7e-05 0.017 15.2 3.4 6 35 291 327 289 330 0.89 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF621-203 - 439 1.3e-09 38.0 29.6 5 5 0.018 18 5.6 0.3 6 16 319 329 317 347 0.80 Zinc ribbon domain # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF621-203.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF621-203.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF621-203.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF621-203.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF621-203.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:11:12 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZNF621-204 - 404 3.9e-52 172.5 45.8 1 8 0.0024 2.2 8.9 0.3 11 24 112 125 109 127 0.86 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF621-204 - 404 3.9e-52 172.5 45.8 2 8 2.7e-11 2.4e-08 34.0 1.6 2 26 131 155 130 155 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF621-204 - 404 3.9e-52 172.5 45.8 3 8 4.4e-07 0.0004 20.7 0.2 5 22 162 179 160 183 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF621-204 - 404 3.9e-52 172.5 45.8 4 8 1.3e-12 1.2e-09 38.2 0.5 1 25 186 210 186 211 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF621-204 - 404 3.9e-52 172.5 45.8 5 8 4.5e-08 4e-05 23.8 1.4 2 25 215 238 214 239 0.90 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF621-204 - 404 3.9e-52 172.5 45.8 6 8 1.9e-11 1.7e-08 34.5 0.7 5 25 246 266 243 267 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF621-204 - 404 3.9e-52 172.5 45.8 7 8 1e-11 9e-09 35.4 1.2 4 25 273 294 272 294 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF621-204 - 404 3.9e-52 172.5 45.8 8 8 0.024 22 5.7 0.0 2 15 299 313 298 327 0.68 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZNF621-204 - 404 3.3e-31 106.0 42.8 1 7 2.8e-08 2.5e-05 24.5 1.1 1 23 116 138 116 138 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF621-204 - 404 3.3e-31 106.0 42.8 2 7 9.4e-06 0.0084 16.5 2.4 1 23 144 166 144 166 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF621-204 - 404 3.3e-31 106.0 42.8 3 7 5.1e-07 0.00045 20.5 0.2 1 23 172 194 172 194 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF621-204 - 404 3.3e-31 106.0 42.8 4 7 4.8e-08 4.3e-05 23.7 0.4 1 23 200 222 200 222 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF621-204 - 404 3.3e-31 106.0 42.8 5 7 5.6e-05 0.05 14.1 1.6 1 23 228 250 228 250 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF621-204 - 404 3.3e-31 106.0 42.8 6 7 3.8e-06 0.0034 17.7 0.3 1 23 256 278 256 278 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF621-204 - 404 3.3e-31 106.0 42.8 7 7 1.8e-05 0.016 15.6 0.4 1 23 284 306 284 306 0.98 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZNF621-204 - 404 8.5e-18 63.5 43.6 1 7 1.2e-05 0.01 16.6 0.8 1 23 116 138 116 139 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF621-204 - 404 8.5e-18 63.5 43.6 2 7 8.6e-06 0.0077 17.0 1.8 1 23 144 166 144 167 0.97 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF621-204 - 404 8.5e-18 63.5 43.6 3 7 2e-05 0.018 15.8 0.2 1 23 172 194 172 195 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF621-204 - 404 8.5e-18 63.5 43.6 4 7 1.8e-05 0.016 16.0 0.5 1 23 200 222 200 223 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF621-204 - 404 8.5e-18 63.5 43.6 5 7 0.063 57 5.0 2.2 1 23 228 250 228 251 0.90 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF621-204 - 404 8.5e-18 63.5 43.6 6 7 0.0033 2.9 9.0 0.3 1 23 256 278 256 279 0.74 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF621-204 - 404 8.5e-18 63.5 43.6 7 7 0.00045 0.4 11.6 0.6 1 23 284 306 284 307 0.86 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF621-204 - 404 3.9e-13 49.0 43.7 1 7 0.00046 0.42 10.7 0.8 2 20 116 134 115 140 0.79 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF621-204 - 404 3.9e-13 49.0 43.7 2 7 0.0002 0.18 11.8 2.9 2 24 144 166 144 167 0.83 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF621-204 - 404 3.9e-13 49.0 43.7 3 7 5.9e-06 0.0053 16.7 0.6 2 24 172 194 172 197 0.92 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF621-204 - 404 3.9e-13 49.0 43.7 4 7 0.0003 0.27 11.3 0.6 2 12 200 210 200 212 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF621-204 - 404 3.9e-13 49.0 43.7 5 7 0.015 13 5.9 0.2 2 11 228 237 227 238 0.89 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF621-204 - 404 3.9e-13 49.0 43.7 6 7 0.0026 2.4 8.3 0.6 2 11 256 265 256 267 0.92 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF621-204 - 404 3.9e-13 49.0 43.7 7 7 0.00033 0.29 11.2 0.7 2 12 284 294 284 306 0.91 C2H2-type zinc finger Zn-ribbon_8 PF09723.10 40 ZNF621-204 - 404 1.3e-09 38.0 30.3 1 5 5.7e-06 0.0051 16.9 2.8 6 35 116 152 115 155 0.87 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF621-204 - 404 1.3e-09 38.0 30.3 2 5 6.8e-06 0.0061 16.7 2.3 6 38 172 211 171 213 0.94 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF621-204 - 404 1.3e-09 38.0 30.3 3 5 0.00013 0.12 12.5 4.1 6 38 228 267 227 270 0.87 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF621-204 - 404 1.3e-09 38.0 30.3 4 5 1.6e-05 0.015 15.4 3.3 6 35 256 292 255 295 0.89 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF621-204 - 404 1.3e-09 38.0 30.3 5 5 0.018 16 5.7 0.3 6 16 284 294 283 312 0.79 Zinc ribbon domain # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF621-204.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF621-204.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF621-204.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF621-204.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF621-204.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:11:13 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF621-205.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF621-205.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF621-205.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF621-205.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF621-205.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:11:13 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF621-206.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF621-206.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF621-206.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF621-206.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF621-206.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:11:13 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- KRAB PF01352.27 42 ZNF621-207 - 118 6.3e-25 86.5 0.2 1 2 6.7e-29 1.2e-24 85.6 0.1 1 42 10 51 10 51 0.99 KRAB box KRAB PF01352.27 42 ZNF621-207 - 118 6.3e-25 86.5 0.2 2 2 0.24 4.3e+03 -2.5 0.0 24 29 99 104 90 112 0.57 KRAB box # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF621-207.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF621-207.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF621-207.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF621-207.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF621-207.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:11:14 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF621-208.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF621-208.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF621-208.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF621-208.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF621-208.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:11:14 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZNF623-201 - 496 1.1e-102 332.2 66.0 1 14 0.097 79 3.9 0.0 17 25 85 93 74 93 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF623-201 - 496 1.1e-102 332.2 66.0 2 14 4.7e-10 3.8e-07 30.2 0.0 1 25 97 121 97 122 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF623-201 - 496 1.1e-102 332.2 66.0 3 14 8.5e-09 6.9e-06 26.2 0.5 1 26 125 150 125 150 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF623-201 - 496 1.1e-102 332.2 66.0 4 14 3.3e-09 2.7e-06 27.5 0.7 2 24 154 176 153 177 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF623-201 - 496 1.1e-102 332.2 66.0 5 14 1.1e-10 9.2e-08 32.2 0.3 1 25 181 205 181 206 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF623-201 - 496 1.1e-102 332.2 66.0 6 14 3.4e-11 2.8e-08 33.8 0.2 2 24 210 232 210 234 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF623-201 - 496 1.1e-102 332.2 66.0 7 14 2.5e-08 2e-05 24.8 1.3 2 26 238 262 237 262 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF623-201 - 496 1.1e-102 332.2 66.0 8 14 2e-10 1.6e-07 31.4 0.1 2 24 266 288 265 290 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF623-201 - 496 1.1e-102 332.2 66.0 9 14 6.1e-10 5e-07 29.9 0.2 2 25 294 317 293 318 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF623-201 - 496 1.1e-102 332.2 66.0 10 14 4.5e-10 3.6e-07 30.3 0.5 1 24 321 344 321 345 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF623-201 - 496 1.1e-102 332.2 66.0 11 14 2.6e-10 2.1e-07 31.1 0.2 2 25 350 373 349 374 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF623-201 - 496 1.1e-102 332.2 66.0 12 14 3.3e-09 2.7e-06 27.6 0.4 1 24 377 400 377 402 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF623-201 - 496 1.1e-102 332.2 66.0 13 14 2.3e-09 1.9e-06 28.0 0.1 4 24 408 428 405 430 0.90 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF623-201 - 496 1.1e-102 332.2 66.0 14 14 1.3e-05 0.011 16.2 0.1 2 25 434 457 433 458 0.87 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZNF623-201 - 496 2.9e-80 260.5 83.6 1 13 1.2e-07 0.0001 22.6 0.4 2 23 84 105 84 105 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF623-201 - 496 2.9e-80 260.5 83.6 2 13 2.9e-08 2.4e-05 24.5 0.9 1 23 111 133 111 133 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF623-201 - 496 2.9e-80 260.5 83.6 3 13 2.4e-07 0.00019 21.7 0.3 1 23 139 161 139 161 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF623-201 - 496 2.9e-80 260.5 83.6 4 13 3.2e-08 2.6e-05 24.4 3.4 1 23 167 189 167 189 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF623-201 - 496 2.9e-80 260.5 83.6 5 13 2.3e-09 1.8e-06 28.0 0.3 1 23 195 217 195 217 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF623-201 - 496 2.9e-80 260.5 83.6 6 13 2.8e-09 2.3e-06 27.7 0.5 1 23 223 245 223 245 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF623-201 - 496 2.9e-80 260.5 83.6 7 13 5.6e-09 4.6e-06 26.8 0.9 1 23 251 273 251 273 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF623-201 - 496 2.9e-80 260.5 83.6 8 13 9.2e-09 7.5e-06 26.1 0.2 1 23 279 301 279 301 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF623-201 - 496 2.9e-80 260.5 83.6 9 13 4.3e-09 3.5e-06 27.2 1.4 1 23 307 329 307 329 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF623-201 - 496 2.9e-80 260.5 83.6 10 13 4e-07 0.00032 21.0 0.4 1 23 335 357 335 357 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF623-201 - 496 2.9e-80 260.5 83.6 11 13 1.3e-06 0.0011 19.3 0.7 1 23 363 385 363 385 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF623-201 - 496 2.9e-80 260.5 83.6 12 13 1.9e-07 0.00016 21.9 0.1 1 23 391 413 391 413 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF623-201 - 496 2.9e-80 260.5 83.6 13 13 5e-08 4.1e-05 23.8 0.7 1 23 419 441 419 441 0.98 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZNF623-201 - 496 4.2e-41 136.0 81.5 1 13 6.9e-06 0.0056 17.4 0.1 2 23 84 105 83 106 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF623-201 - 496 4.2e-41 136.0 81.5 2 13 5.7e-05 0.047 14.6 0.6 1 23 111 133 111 134 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF623-201 - 496 4.2e-41 136.0 81.5 3 13 0.00035 0.28 12.1 0.4 1 23 139 161 139 162 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF623-201 - 496 4.2e-41 136.0 81.5 4 13 0.00013 0.1 13.5 3.3 1 23 167 189 167 190 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF623-201 - 496 4.2e-41 136.0 81.5 5 13 5.5e-06 0.0045 17.7 0.4 1 23 195 217 195 218 0.91 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF623-201 - 496 4.2e-41 136.0 81.5 6 13 1.2e-05 0.0095 16.7 0.4 1 23 223 245 223 246 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF623-201 - 496 4.2e-41 136.0 81.5 7 13 0.00016 0.13 13.2 0.7 1 23 251 273 251 274 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF623-201 - 496 4.2e-41 136.0 81.5 8 13 4.8e-05 0.039 14.8 0.3 1 23 279 301 279 302 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF623-201 - 496 4.2e-41 136.0 81.5 9 13 4.8e-05 0.039 14.8 0.9 1 23 307 329 307 330 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF623-201 - 496 4.2e-41 136.0 81.5 10 13 0.00016 0.13 13.2 0.5 1 23 335 357 335 358 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF623-201 - 496 4.2e-41 136.0 81.5 11 13 7e-05 0.057 14.3 1.0 1 23 363 385 363 386 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF623-201 - 496 4.2e-41 136.0 81.5 12 13 0.0006 0.49 11.4 0.2 1 23 391 413 391 414 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF623-201 - 496 4.2e-41 136.0 81.5 13 13 1.8e-05 0.015 16.1 0.6 1 23 419 441 419 442 0.96 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF623-201 - 496 9e-17 60.6 86.4 1 14 0.0008 0.65 10.1 0.0 4 24 85 105 84 108 0.83 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF623-201 - 496 9e-17 60.6 86.4 2 14 0.0029 2.4 8.3 1.0 2 22 111 131 111 135 0.82 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF623-201 - 496 9e-17 60.6 86.4 3 14 0.00016 0.13 12.3 0.3 2 24 139 161 138 164 0.91 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF623-201 - 496 9e-17 60.6 86.4 4 14 0.052 42 4.3 1.5 2 11 167 176 167 190 0.90 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF623-201 - 496 9e-17 60.6 86.4 5 14 0.0017 1.4 9.0 1.1 2 12 195 205 195 207 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF623-201 - 496 9e-17 60.6 86.4 6 14 0.00025 0.2 11.7 0.2 2 11 223 232 223 241 0.83 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF623-201 - 496 9e-17 60.6 86.4 7 14 7.6e-05 0.062 13.3 0.7 2 22 251 271 250 275 0.87 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF623-201 - 496 9e-17 60.6 86.4 8 14 0.0023 1.8 8.6 0.2 2 11 279 288 279 301 0.89 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF623-201 - 496 9e-17 60.6 86.4 9 14 0.0012 0.99 9.5 0.7 2 12 307 317 307 325 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF623-201 - 496 9e-17 60.6 86.4 10 14 0.0018 1.5 8.9 0.3 2 11 335 344 334 344 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF623-201 - 496 9e-17 60.6 86.4 11 14 0.0022 1.8 8.6 3.3 1 11 362 372 362 385 0.92 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF623-201 - 496 9e-17 60.6 86.4 12 14 0.097 79 3.4 1.0 2 11 391 400 391 400 0.95 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF623-201 - 496 9e-17 60.6 86.4 13 14 0.01 8.3 6.5 0.8 2 11 419 428 419 428 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF623-201 - 496 9e-17 60.6 86.4 14 14 8.4 6.8e+03 -2.8 0.0 2 6 447 451 446 458 0.75 C2H2-type zinc finger zf_UBZ PF18439.1 32 ZNF623-201 - 496 2.5e-13 49.4 53.8 1 13 0.052 42 3.8 0.0 4 14 84 94 81 102 0.79 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF623-201 - 496 2.5e-13 49.4 53.8 2 13 0.00046 0.38 10.4 0.2 3 21 111 130 109 130 0.91 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF623-201 - 496 2.5e-13 49.4 53.8 3 13 0.17 1.4e+02 2.2 0.0 3 21 139 158 137 158 0.82 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF623-201 - 496 2.5e-13 49.4 53.8 4 13 0.031 25 4.5 0.8 3 17 167 182 165 186 0.75 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF623-201 - 496 2.5e-13 49.4 53.8 5 13 0.01 8.5 6.1 0.1 3 16 195 208 193 214 0.83 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF623-201 - 496 2.5e-13 49.4 53.8 6 13 0.021 17 5.1 0.1 3 14 223 234 221 241 0.83 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF623-201 - 496 2.5e-13 49.4 53.8 7 13 0.00053 0.43 10.2 0.8 2 21 250 270 249 270 0.93 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF623-201 - 496 2.5e-13 49.4 53.8 8 13 0.02 16 5.2 0.1 3 21 279 298 277 298 0.84 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF623-201 - 496 2.5e-13 49.4 53.8 9 13 0.0002 0.16 11.6 0.1 3 21 307 326 305 326 0.93 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF623-201 - 496 2.5e-13 49.4 53.8 10 13 0.081 66 3.2 0.1 3 12 335 344 333 349 0.86 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF623-201 - 496 2.5e-13 49.4 53.8 11 13 0.00092 0.75 9.4 0.4 3 21 363 382 362 382 0.94 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF623-201 - 496 2.5e-13 49.4 53.8 12 13 0.019 15 5.2 0.1 3 16 391 405 389 410 0.78 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF623-201 - 496 2.5e-13 49.4 53.8 13 13 0.038 31 4.3 0.0 3 20 419 437 417 438 0.79 Ubiquitin-Binding Zinc Finger XPA_N PF01286.18 32 ZNF623-201 - 496 1e-12 47.8 55.1 1 13 0.28 2.3e+02 1.9 0.1 4 12 85 93 82 96 0.87 XPA protein N-terminal XPA_N PF01286.18 32 ZNF623-201 - 496 1e-12 47.8 55.1 2 13 0.002 1.7 8.8 0.1 3 14 112 123 110 129 0.84 XPA protein N-terminal XPA_N PF01286.18 32 ZNF623-201 - 496 1e-12 47.8 55.1 3 13 1.1 8.7e+02 0.1 0.1 3 11 140 148 138 150 0.62 XPA protein N-terminal XPA_N PF01286.18 32 ZNF623-201 - 496 1e-12 47.8 55.1 4 13 0.036 29 4.8 1.7 3 14 168 179 166 180 0.92 XPA protein N-terminal XPA_N PF01286.18 32 ZNF623-201 - 496 1e-12 47.8 55.1 5 13 0.00036 0.29 11.2 0.2 3 17 196 210 194 212 0.92 XPA protein N-terminal XPA_N PF01286.18 32 ZNF623-201 - 496 1e-12 47.8 55.1 6 13 0.005 4.1 7.5 0.1 3 14 224 235 222 244 0.82 XPA protein N-terminal XPA_N PF01286.18 32 ZNF623-201 - 496 1e-12 47.8 55.1 7 13 0.011 8.8 6.5 0.2 3 11 252 260 250 268 0.90 XPA protein N-terminal XPA_N PF01286.18 32 ZNF623-201 - 496 1e-12 47.8 55.1 8 13 0.005 4.1 7.5 0.1 3 14 280 291 278 297 0.84 XPA protein N-terminal XPA_N PF01286.18 32 ZNF623-201 - 496 1e-12 47.8 55.1 9 13 0.014 11 6.1 0.1 3 13 308 318 306 321 0.87 XPA protein N-terminal XPA_N PF01286.18 32 ZNF623-201 - 496 1e-12 47.8 55.1 10 13 0.0012 1 9.5 0.2 3 18 336 352 335 354 0.80 XPA protein N-terminal XPA_N PF01286.18 32 ZNF623-201 - 496 1e-12 47.8 55.1 11 13 0.0059 4.8 7.3 0.3 3 12 364 373 363 376 0.90 XPA protein N-terminal XPA_N PF01286.18 32 ZNF623-201 - 496 1e-12 47.8 55.1 12 13 0.0053 4.3 7.5 0.2 3 14 392 403 390 409 0.86 XPA protein N-terminal XPA_N PF01286.18 32 ZNF623-201 - 496 1e-12 47.8 55.1 13 13 1 8.2e+02 0.2 0.0 3 12 420 429 418 431 0.85 XPA protein N-terminal Zn-ribbon_8 PF09723.10 40 ZNF623-201 - 496 1.9e-12 47.1 63.7 1 11 0.00032 0.26 11.4 0.2 8 34 85 118 83 122 0.92 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF623-201 - 496 1.9e-12 47.1 63.7 2 11 0.0051 4.2 7.6 3.0 6 34 139 174 138 177 0.88 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF623-201 - 496 1.9e-12 47.1 63.7 3 11 0.013 11 6.3 6.2 6 34 167 202 166 205 0.88 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF623-201 - 496 1.9e-12 47.1 63.7 4 11 8.8e-05 0.072 13.2 3.7 6 35 195 231 194 236 0.91 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF623-201 - 496 1.9e-12 47.1 63.7 5 11 0.00013 0.11 12.7 5.3 5 35 250 287 249 291 0.89 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF623-201 - 496 1.9e-12 47.1 63.7 6 11 0.033 27 5.0 0.4 6 16 279 289 278 301 0.82 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF623-201 - 496 1.9e-12 47.1 63.7 7 11 9.8e-05 0.08 13.1 4.9 6 34 307 342 306 345 0.87 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF623-201 - 496 1.9e-12 47.1 63.7 8 11 8.6e-05 0.07 13.3 4.3 6 35 335 372 334 377 0.90 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF623-201 - 496 1.9e-12 47.1 63.7 9 11 0.00046 0.38 10.9 4.9 6 34 363 398 362 402 0.89 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF623-201 - 496 1.9e-12 47.1 63.7 10 11 0.001 0.85 9.8 1.3 6 34 391 426 390 432 0.84 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF623-201 - 496 1.9e-12 47.1 63.7 11 11 0.098 80 3.5 0.8 6 29 419 449 418 456 0.77 Zinc ribbon domain zf-C2H2_jaz PF12171.8 27 ZNF623-201 - 496 3.1e-12 46.4 55.2 1 13 0.03 24 5.4 0.0 4 24 85 105 84 106 0.89 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF623-201 - 496 3.1e-12 46.4 55.2 2 13 0.065 53 4.3 0.0 2 22 111 131 110 131 0.89 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF623-201 - 496 3.1e-12 46.4 55.2 3 13 0.55 4.4e+02 1.3 0.2 3 13 140 150 139 159 0.75 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF623-201 - 496 3.1e-12 46.4 55.2 4 13 0.47 3.8e+02 1.5 0.8 2 21 167 186 166 187 0.87 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF623-201 - 496 3.1e-12 46.4 55.2 5 13 0.001 0.83 10.0 0.0 2 22 195 215 194 215 0.90 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF623-201 - 496 3.1e-12 46.4 55.2 6 13 0.00042 0.34 11.2 0.1 2 21 223 242 222 243 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF623-201 - 496 3.1e-12 46.4 55.2 7 13 0.00056 0.46 10.8 0.5 1 22 250 271 250 271 0.95 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF623-201 - 496 3.1e-12 46.4 55.2 8 13 0.00098 0.8 10.1 0.1 2 22 279 299 278 299 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF623-201 - 496 3.1e-12 46.4 55.2 9 13 0.039 32 5.0 0.3 2 22 307 327 306 327 0.91 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF623-201 - 496 3.1e-12 46.4 55.2 10 13 1.4 1.1e+03 0.0 0.4 2 11 335 344 334 355 0.76 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF623-201 - 496 3.1e-12 46.4 55.2 11 13 0.059 48 4.4 0.8 2 22 363 383 362 383 0.84 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF623-201 - 496 3.1e-12 46.4 55.2 12 13 0.041 33 4.9 0.1 2 20 391 409 390 410 0.84 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF623-201 - 496 3.1e-12 46.4 55.2 13 13 0.0011 0.87 10.0 0.2 2 22 419 439 418 439 0.93 Zinc-finger double-stranded RNA-binding DZR PF12773.7 49 ZNF623-201 - 496 3.1e-10 39.9 38.9 1 2 0.00091 0.74 9.9 0.2 8 36 78 118 74 126 0.83 Double zinc ribbon DZR PF12773.7 49 ZNF623-201 - 496 3.1e-10 39.9 38.9 2 2 0.023 19 5.4 5.6 13 49 139 201 129 201 0.76 Double zinc ribbon Zn_Tnp_IS1595 PF12760.7 46 ZNF623-201 - 496 2e-08 34.0 60.5 1 11 0.46 3.8e+02 1.2 0.9 30 45 101 118 81 119 0.74 Transposase zinc-ribbon domain Zn_Tnp_IS1595 PF12760.7 46 ZNF623-201 - 496 2e-08 34.0 60.5 2 11 0.21 1.7e+02 2.3 2.1 20 45 112 146 107 147 0.66 Transposase zinc-ribbon domain Zn_Tnp_IS1595 PF12760.7 46 ZNF623-201 - 496 2e-08 34.0 60.5 3 11 0.054 44 4.2 2.9 19 45 139 174 125 175 0.75 Transposase zinc-ribbon domain Zn_Tnp_IS1595 PF12760.7 46 ZNF623-201 - 496 2e-08 34.0 60.5 4 11 0.052 42 4.2 7.9 19 45 167 202 164 203 0.70 Transposase zinc-ribbon domain Zn_Tnp_IS1595 PF12760.7 46 ZNF623-201 - 496 2e-08 34.0 60.5 5 11 0.018 15 5.7 0.2 31 45 215 230 206 231 0.75 Transposase zinc-ribbon domain Zn_Tnp_IS1595 PF12760.7 46 ZNF623-201 - 496 2e-08 34.0 60.5 6 11 0.00034 0.27 11.2 0.6 28 45 240 258 234 259 0.87 Transposase zinc-ribbon domain Zn_Tnp_IS1595 PF12760.7 46 ZNF623-201 - 496 2e-08 34.0 60.5 7 11 0.03 24 5.0 0.1 31 45 271 286 263 287 0.76 Transposase zinc-ribbon domain Zn_Tnp_IS1595 PF12760.7 46 ZNF623-201 - 496 2e-08 34.0 60.5 8 11 4.1e-05 0.033 14.2 2.0 19 45 307 342 292 343 0.87 Transposase zinc-ribbon domain Zn_Tnp_IS1595 PF12760.7 46 ZNF623-201 - 496 2e-08 34.0 60.5 9 11 0.0029 2.4 8.2 0.2 34 45 353 370 346 371 0.72 Transposase zinc-ribbon domain Zn_Tnp_IS1595 PF12760.7 46 ZNF623-201 - 496 2e-08 34.0 60.5 10 11 0.097 79 3.3 0.1 35 45 388 398 374 399 0.75 Transposase zinc-ribbon domain Zn_Tnp_IS1595 PF12760.7 46 ZNF623-201 - 496 2e-08 34.0 60.5 11 11 0.0025 2 8.4 0.1 19 41 419 450 404 451 0.84 Transposase zinc-ribbon domain zinc_ribbon_15 PF17032.5 86 ZNF623-201 - 496 5.9e-07 30.2 47.0 1 10 0.72 5.9e+02 1.3 0.1 25 78 42 95 32 102 0.65 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF623-201 - 496 5.9e-07 30.2 47.0 2 10 0.0059 4.8 8.0 0.4 37 74 110 147 102 152 0.84 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF623-201 - 496 5.9e-07 30.2 47.0 3 10 0.0061 4.9 8.0 2.2 30 77 159 206 154 209 0.85 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF623-201 - 496 5.9e-07 30.2 47.0 4 10 0.00022 0.18 12.5 1.7 30 77 215 262 207 266 0.86 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF623-201 - 496 5.9e-07 30.2 47.0 5 10 0.00037 0.31 11.8 1.1 30 81 271 322 265 325 0.85 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF623-201 - 496 5.9e-07 30.2 47.0 6 10 0.00079 0.65 10.8 1.2 30 74 299 343 294 348 0.84 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF623-201 - 496 5.9e-07 30.2 47.0 7 10 0.00083 0.68 10.7 1.4 30 76 327 373 320 381 0.84 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF623-201 - 496 5.9e-07 30.2 47.0 8 10 0.0013 1 10.1 4.2 21 77 346 402 337 406 0.84 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF623-201 - 496 5.9e-07 30.2 47.0 9 10 0.025 21 6.0 0.5 31 81 384 434 374 437 0.78 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF623-201 - 496 5.9e-07 30.2 47.0 10 10 0.28 2.3e+02 2.6 0.2 33 74 416 455 403 464 0.72 zinc-ribbon family # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF623-201.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF623-201.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF623-201.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF623-201.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF623-201.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:11:15 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZNF623-202 - 536 4e-102 330.5 66.0 1 14 0.12 86 3.8 0.0 17 25 125 133 114 133 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF623-202 - 536 4e-102 330.5 66.0 2 14 5.6e-10 4.2e-07 30.1 0.0 1 25 137 161 137 162 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF623-202 - 536 4e-102 330.5 66.0 3 14 1e-08 7.6e-06 26.1 0.5 1 26 165 190 165 190 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF623-202 - 536 4e-102 330.5 66.0 4 14 4e-09 3e-06 27.4 0.7 2 24 194 216 193 217 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF623-202 - 536 4e-102 330.5 66.0 5 14 1.3e-10 1e-07 32.1 0.3 1 25 221 245 221 246 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF623-202 - 536 4e-102 330.5 66.0 6 14 4.1e-11 3.1e-08 33.7 0.2 2 24 250 272 250 274 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF623-202 - 536 4e-102 330.5 66.0 7 14 3e-08 2.2e-05 24.6 1.3 2 26 278 302 277 302 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF623-202 - 536 4e-102 330.5 66.0 8 14 2.4e-10 1.8e-07 31.3 0.1 2 24 306 328 305 330 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF623-202 - 536 4e-102 330.5 66.0 9 14 7.3e-10 5.5e-07 29.7 0.2 2 25 334 357 333 358 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF623-202 - 536 4e-102 330.5 66.0 10 14 5.3e-10 4e-07 30.2 0.5 1 24 361 384 361 385 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF623-202 - 536 4e-102 330.5 66.0 11 14 3.1e-10 2.3e-07 30.9 0.2 2 25 390 413 389 414 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF623-202 - 536 4e-102 330.5 66.0 12 14 3.9e-09 2.9e-06 27.4 0.4 1 24 417 440 417 442 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF623-202 - 536 4e-102 330.5 66.0 13 14 2.8e-09 2.1e-06 27.9 0.1 4 24 448 468 445 470 0.90 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF623-202 - 536 4e-102 330.5 66.0 14 14 1.5e-05 0.012 16.1 0.1 2 25 474 497 473 498 0.87 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZNF623-202 - 536 9.7e-80 258.8 83.6 1 13 1.5e-07 0.00011 22.4 0.4 2 23 124 145 124 145 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF623-202 - 536 9.7e-80 258.8 83.6 2 13 3.5e-08 2.6e-05 24.4 0.9 1 23 151 173 151 173 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF623-202 - 536 9.7e-80 258.8 83.6 3 13 2.8e-07 0.00021 21.5 0.3 1 23 179 201 179 201 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF623-202 - 536 9.7e-80 258.8 83.6 4 13 3.9e-08 2.9e-05 24.3 3.4 1 23 207 229 207 229 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF623-202 - 536 9.7e-80 258.8 83.6 5 13 2.7e-09 2e-06 27.9 0.3 1 23 235 257 235 257 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF623-202 - 536 9.7e-80 258.8 83.6 6 13 3.4e-09 2.5e-06 27.6 0.5 1 23 263 285 263 285 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF623-202 - 536 9.7e-80 258.8 83.6 7 13 6.8e-09 5e-06 26.7 0.9 1 23 291 313 291 313 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF623-202 - 536 9.7e-80 258.8 83.6 8 13 1.1e-08 8.3e-06 26.0 0.2 1 23 319 341 319 341 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF623-202 - 536 9.7e-80 258.8 83.6 9 13 5.2e-09 3.9e-06 27.0 1.4 1 23 347 369 347 369 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF623-202 - 536 9.7e-80 258.8 83.6 10 13 4.7e-07 0.00035 20.8 0.4 1 23 375 397 375 397 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF623-202 - 536 9.7e-80 258.8 83.6 11 13 1.6e-06 0.0012 19.2 0.7 1 23 403 425 403 425 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF623-202 - 536 9.7e-80 258.8 83.6 12 13 2.3e-07 0.00017 21.8 0.1 1 23 431 453 431 453 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF623-202 - 536 9.7e-80 258.8 83.6 13 13 6e-08 4.5e-05 23.7 0.7 1 23 459 481 459 481 0.98 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZNF623-202 - 536 1.4e-40 134.4 81.5 1 13 8.3e-06 0.0062 17.3 0.1 2 23 124 145 123 146 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF623-202 - 536 1.4e-40 134.4 81.5 2 13 6.9e-05 0.051 14.4 0.6 1 23 151 173 151 174 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF623-202 - 536 1.4e-40 134.4 81.5 3 13 0.00042 0.31 12.0 0.4 1 23 179 201 179 202 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF623-202 - 536 1.4e-40 134.4 81.5 4 13 0.00015 0.11 13.3 3.3 1 23 207 229 207 230 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF623-202 - 536 1.4e-40 134.4 81.5 5 13 6.6e-06 0.0049 17.6 0.4 1 23 235 257 235 258 0.91 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF623-202 - 536 1.4e-40 134.4 81.5 6 13 1.4e-05 0.01 16.6 0.4 1 23 263 285 263 286 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF623-202 - 536 1.4e-40 134.4 81.5 7 13 0.00019 0.14 13.0 0.7 1 23 291 313 291 314 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF623-202 - 536 1.4e-40 134.4 81.5 8 13 5.7e-05 0.043 14.7 0.3 1 23 319 341 319 342 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF623-202 - 536 1.4e-40 134.4 81.5 9 13 5.8e-05 0.043 14.7 0.9 1 23 347 369 347 370 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF623-202 - 536 1.4e-40 134.4 81.5 10 13 0.00019 0.14 13.1 0.5 1 23 375 397 375 398 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF623-202 - 536 1.4e-40 134.4 81.5 11 13 8.4e-05 0.062 14.2 1.0 1 23 403 425 403 426 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF623-202 - 536 1.4e-40 134.4 81.5 12 13 0.00072 0.54 11.2 0.2 1 23 431 453 431 454 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF623-202 - 536 1.4e-40 134.4 81.5 13 13 2.2e-05 0.016 16.0 0.6 1 23 459 481 459 482 0.96 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF623-202 - 536 2.4e-16 59.3 86.2 1 14 0.00095 0.71 9.9 0.0 4 24 125 145 124 148 0.83 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF623-202 - 536 2.4e-16 59.3 86.2 2 14 0.0035 2.6 8.1 1.0 2 22 151 171 151 175 0.82 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF623-202 - 536 2.4e-16 59.3 86.2 3 14 0.0002 0.15 12.1 0.3 2 24 179 201 178 204 0.91 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF623-202 - 536 2.4e-16 59.3 86.2 4 14 0.062 46 4.2 1.5 2 11 207 216 207 230 0.90 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF623-202 - 536 2.4e-16 59.3 86.2 5 14 0.002 1.5 8.9 1.1 2 12 235 245 235 247 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF623-202 - 536 2.4e-16 59.3 86.2 6 14 0.00029 0.22 11.6 0.2 2 11 263 272 263 281 0.83 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF623-202 - 536 2.4e-16 59.3 86.2 7 14 9.1e-05 0.068 13.2 0.7 2 22 291 311 290 315 0.87 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF623-202 - 536 2.4e-16 59.3 86.2 8 14 0.0027 2 8.5 0.2 2 11 319 328 319 341 0.90 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF623-202 - 536 2.4e-16 59.3 86.2 9 14 0.0014 1.1 9.4 0.7 2 12 347 357 347 365 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF623-202 - 536 2.4e-16 59.3 86.2 10 14 0.0021 1.6 8.8 0.3 2 11 375 384 374 384 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF623-202 - 536 2.4e-16 59.3 86.2 11 14 0.0022 1.7 8.7 3.0 1 11 402 412 402 425 0.92 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF623-202 - 536 2.4e-16 59.3 86.2 12 14 0.11 86 3.3 1.0 2 11 431 440 431 440 0.95 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF623-202 - 536 2.4e-16 59.3 86.2 13 14 0.012 9 6.4 0.8 2 11 459 468 459 468 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF623-202 - 536 2.4e-16 59.3 86.2 14 14 9.9 7.4e+03 -2.9 0.0 2 6 487 491 486 498 0.75 C2H2-type zinc finger zf_UBZ PF18439.1 32 ZNF623-202 - 536 8.7e-13 47.6 54.0 1 13 0.062 46 3.7 0.0 4 14 124 134 121 142 0.79 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF623-202 - 536 8.7e-13 47.6 54.0 2 13 0.00056 0.41 10.3 0.2 3 21 151 170 149 170 0.91 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF623-202 - 536 8.7e-13 47.6 54.0 3 13 0.2 1.5e+02 2.1 0.0 3 21 179 198 177 198 0.82 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF623-202 - 536 8.7e-13 47.6 54.0 4 13 0.037 28 4.4 0.8 3 17 207 222 205 226 0.75 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF623-202 - 536 8.7e-13 47.6 54.0 5 13 0.012 9.3 5.9 0.1 3 16 235 248 233 254 0.83 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF623-202 - 536 8.7e-13 47.6 54.0 6 13 0.025 19 5.0 0.1 3 14 263 274 261 281 0.83 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF623-202 - 536 8.7e-13 47.6 54.0 7 13 0.00064 0.47 10.1 0.8 2 21 290 310 289 310 0.93 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF623-202 - 536 8.7e-13 47.6 54.0 8 13 0.027 20 4.9 0.2 3 21 319 338 318 338 0.83 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF623-202 - 536 8.7e-13 47.6 54.0 9 13 0.00024 0.18 11.4 0.1 3 21 347 366 345 366 0.93 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF623-202 - 536 8.7e-13 47.6 54.0 10 13 0.096 72 3.1 0.1 3 12 375 384 373 389 0.86 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF623-202 - 536 8.7e-13 47.6 54.0 11 13 0.0011 0.82 9.3 0.4 3 21 403 422 402 422 0.94 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF623-202 - 536 8.7e-13 47.6 54.0 12 13 0.023 17 5.1 0.1 3 16 431 445 429 450 0.78 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF623-202 - 536 8.7e-13 47.6 54.0 13 13 0.045 34 4.2 0.0 3 20 459 477 457 478 0.79 Ubiquitin-Binding Zinc Finger Zn-ribbon_8 PF09723.10 40 ZNF623-202 - 536 1.5e-12 47.4 62.2 1 10 0.00038 0.29 11.3 0.2 8 34 125 158 123 162 0.92 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF623-202 - 536 1.5e-12 47.4 62.2 2 10 0.0075 5.6 7.2 3.3 6 34 179 214 178 217 0.88 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF623-202 - 536 1.5e-12 47.4 62.2 3 10 0.013 10 6.4 6.1 6 34 207 242 206 246 0.87 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF623-202 - 536 1.5e-12 47.4 62.2 4 10 6.2e-05 0.046 13.8 3.0 6 35 235 271 234 276 0.91 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF623-202 - 536 1.5e-12 47.4 62.2 5 10 0.0001 0.078 13.1 4.8 5 35 290 327 289 335 0.89 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF623-202 - 536 1.5e-12 47.4 62.2 6 10 0.00011 0.079 13.1 4.7 6 34 347 382 346 385 0.87 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF623-202 - 536 1.5e-12 47.4 62.2 7 10 9.7e-05 0.072 13.2 4.1 6 34 375 410 374 416 0.90 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF623-202 - 536 1.5e-12 47.4 62.2 8 10 0.00051 0.38 10.9 4.8 6 34 403 438 402 442 0.89 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF623-202 - 536 1.5e-12 47.4 62.2 9 10 0.0011 0.84 9.8 1.2 6 34 431 466 430 472 0.84 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF623-202 - 536 1.5e-12 47.4 62.2 10 10 0.099 74 3.6 0.6 6 29 459 489 458 497 0.77 Zinc ribbon domain XPA_N PF01286.18 32 ZNF623-202 - 536 3e-12 46.3 55.1 1 13 0.34 2.5e+02 1.8 0.1 4 12 125 133 122 136 0.87 XPA protein N-terminal XPA_N PF01286.18 32 ZNF623-202 - 536 3e-12 46.3 55.1 2 13 0.0024 1.8 8.7 0.1 3 14 152 163 150 169 0.84 XPA protein N-terminal XPA_N PF01286.18 32 ZNF623-202 - 536 3e-12 46.3 55.1 3 13 1.3 9.5e+02 -0.0 0.1 3 11 180 188 178 190 0.62 XPA protein N-terminal XPA_N PF01286.18 32 ZNF623-202 - 536 3e-12 46.3 55.1 4 13 0.043 32 4.7 1.7 3 14 208 219 206 220 0.92 XPA protein N-terminal XPA_N PF01286.18 32 ZNF623-202 - 536 3e-12 46.3 55.1 5 13 0.00043 0.32 11.1 0.2 3 17 236 250 234 252 0.92 XPA protein N-terminal XPA_N PF01286.18 32 ZNF623-202 - 536 3e-12 46.3 55.1 6 13 0.0059 4.4 7.4 0.1 3 14 264 275 262 284 0.82 XPA protein N-terminal XPA_N PF01286.18 32 ZNF623-202 - 536 3e-12 46.3 55.1 7 13 0.013 9.5 6.4 0.2 3 11 292 300 290 308 0.90 XPA protein N-terminal XPA_N PF01286.18 32 ZNF623-202 - 536 3e-12 46.3 55.1 8 13 0.0059 4.4 7.4 0.1 3 14 320 331 318 337 0.84 XPA protein N-terminal XPA_N PF01286.18 32 ZNF623-202 - 536 3e-12 46.3 55.1 9 13 0.017 12 6.0 0.1 3 13 348 358 346 361 0.87 XPA protein N-terminal XPA_N PF01286.18 32 ZNF623-202 - 536 3e-12 46.3 55.1 10 13 0.0015 1.1 9.3 0.2 3 18 376 392 375 394 0.80 XPA protein N-terminal XPA_N PF01286.18 32 ZNF623-202 - 536 3e-12 46.3 55.1 11 13 0.007 5.2 7.2 0.3 3 12 404 413 403 416 0.90 XPA protein N-terminal XPA_N PF01286.18 32 ZNF623-202 - 536 3e-12 46.3 55.1 12 13 0.0063 4.7 7.3 0.2 3 14 432 443 430 449 0.86 XPA protein N-terminal XPA_N PF01286.18 32 ZNF623-202 - 536 3e-12 46.3 55.1 13 13 1.2 9e+02 0.0 0.0 3 12 460 469 458 471 0.85 XPA protein N-terminal zf-C2H2_jaz PF12171.8 27 ZNF623-202 - 536 9.3e-12 44.9 55.2 1 13 0.035 26 5.2 0.0 4 24 125 145 124 146 0.89 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF623-202 - 536 9.3e-12 44.9 55.2 2 13 0.078 58 4.1 0.0 2 22 151 171 150 171 0.89 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF623-202 - 536 9.3e-12 44.9 55.2 3 13 0.65 4.9e+02 1.2 0.2 3 13 180 190 179 199 0.75 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF623-202 - 536 9.3e-12 44.9 55.2 4 13 0.56 4.2e+02 1.4 0.8 2 21 207 226 206 227 0.87 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF623-202 - 536 9.3e-12 44.9 55.2 5 13 0.0012 0.9 9.9 0.0 2 22 235 255 234 255 0.90 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF623-202 - 536 9.3e-12 44.9 55.2 6 13 0.00051 0.38 11.1 0.1 2 21 263 282 262 283 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF623-202 - 536 9.3e-12 44.9 55.2 7 13 0.00067 0.5 10.7 0.5 1 22 290 311 290 311 0.95 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF623-202 - 536 9.3e-12 44.9 55.2 8 13 0.0012 0.88 9.9 0.1 2 22 319 339 318 339 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF623-202 - 536 9.3e-12 44.9 55.2 9 13 0.047 35 4.8 0.3 2 22 347 367 346 367 0.91 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF623-202 - 536 9.3e-12 44.9 55.2 10 13 1.6 1.2e+03 -0.1 0.4 2 11 375 384 374 395 0.76 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF623-202 - 536 9.3e-12 44.9 55.2 11 13 0.071 53 4.3 0.8 2 22 403 423 402 423 0.84 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF623-202 - 536 9.3e-12 44.9 55.2 12 13 0.049 36 4.8 0.1 2 20 431 449 430 450 0.84 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF623-202 - 536 9.3e-12 44.9 55.2 13 13 0.0013 0.95 9.8 0.2 2 22 459 479 458 479 0.93 Zinc-finger double-stranded RNA-binding DZR PF12773.7 49 ZNF623-202 - 536 5.2e-10 39.2 38.7 1 6 0.0011 0.82 9.7 0.2 8 36 118 158 114 166 0.83 Double zinc ribbon DZR PF12773.7 49 ZNF623-202 - 536 5.2e-10 39.2 38.7 2 6 0.23 1.7e+02 2.3 13.4 1 49 209 297 169 305 0.82 Double zinc ribbon DZR PF12773.7 49 ZNF623-202 - 536 5.2e-10 39.2 38.7 3 6 0.018 13 5.9 2.0 13 38 291 328 281 334 0.79 Double zinc ribbon DZR PF12773.7 49 ZNF623-202 - 536 5.2e-10 39.2 38.7 4 6 0.0012 0.91 9.6 11.5 1 49 293 381 293 383 0.86 Double zinc ribbon DZR PF12773.7 49 ZNF623-202 - 536 5.2e-10 39.2 38.7 5 6 0.016 12 6.0 0.9 14 37 376 411 365 420 0.70 Double zinc ribbon DZR PF12773.7 49 ZNF623-202 - 536 5.2e-10 39.2 38.7 6 6 0.00021 0.16 12.0 3.4 1 44 405 474 377 477 0.79 Double zinc ribbon Zn_Tnp_IS1595 PF12760.7 46 ZNF623-202 - 536 6.9e-08 32.3 60.9 1 11 0.59 4.4e+02 0.9 1.0 30 45 141 158 121 159 0.74 Transposase zinc-ribbon domain Zn_Tnp_IS1595 PF12760.7 46 ZNF623-202 - 536 6.9e-08 32.3 60.9 2 11 0.25 1.8e+02 2.2 2.1 20 45 152 186 147 187 0.66 Transposase zinc-ribbon domain Zn_Tnp_IS1595 PF12760.7 46 ZNF623-202 - 536 6.9e-08 32.3 60.9 3 11 0.065 49 4.0 2.9 19 45 179 214 165 215 0.75 Transposase zinc-ribbon domain Zn_Tnp_IS1595 PF12760.7 46 ZNF623-202 - 536 6.9e-08 32.3 60.9 4 11 0.049 37 4.4 7.8 19 45 207 242 203 243 0.71 Transposase zinc-ribbon domain Zn_Tnp_IS1595 PF12760.7 46 ZNF623-202 - 536 6.9e-08 32.3 60.9 5 11 0.022 16 5.5 0.2 31 45 255 270 246 271 0.75 Transposase zinc-ribbon domain Zn_Tnp_IS1595 PF12760.7 46 ZNF623-202 - 536 6.9e-08 32.3 60.9 6 11 0.0004 0.3 11.1 0.6 28 45 280 298 274 299 0.87 Transposase zinc-ribbon domain Zn_Tnp_IS1595 PF12760.7 46 ZNF623-202 - 536 6.9e-08 32.3 60.9 7 11 0.036 27 4.9 0.1 31 45 311 326 303 327 0.76 Transposase zinc-ribbon domain Zn_Tnp_IS1595 PF12760.7 46 ZNF623-202 - 536 6.9e-08 32.3 60.9 8 11 5.4e-05 0.04 13.9 2.1 19 45 347 382 333 383 0.87 Transposase zinc-ribbon domain Zn_Tnp_IS1595 PF12760.7 46 ZNF623-202 - 536 6.9e-08 32.3 60.9 9 11 0.0035 2.6 8.1 0.2 34 45 393 410 386 411 0.72 Transposase zinc-ribbon domain Zn_Tnp_IS1595 PF12760.7 46 ZNF623-202 - 536 6.9e-08 32.3 60.9 10 11 0.12 86 3.2 0.1 35 45 428 438 414 439 0.75 Transposase zinc-ribbon domain Zn_Tnp_IS1595 PF12760.7 46 ZNF623-202 - 536 6.9e-08 32.3 60.9 11 11 0.003 2.3 8.3 0.1 19 41 459 490 444 491 0.84 Transposase zinc-ribbon domain zinc_ribbon_15 PF17032.5 86 ZNF623-202 - 536 9.7e-07 29.5 46.7 1 9 0.91 6.8e+02 1.1 0.1 25 78 82 135 73 141 0.63 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF623-202 - 536 9.7e-07 29.5 46.7 2 9 0.0066 4.9 8.0 0.3 36 74 149 187 138 192 0.85 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF623-202 - 536 9.7e-07 29.5 46.7 3 9 0.0072 5.4 7.8 2.2 30 77 199 246 193 249 0.85 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF623-202 - 536 9.7e-07 29.5 46.7 4 9 0.00026 0.2 12.5 1.7 30 77 255 302 247 307 0.86 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF623-202 - 536 9.7e-07 29.5 46.7 5 9 0.00047 0.35 11.6 1.2 30 81 311 362 305 366 0.85 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF623-202 - 536 9.7e-07 29.5 46.7 6 9 0.00088 0.66 10.8 1.1 30 74 339 383 334 388 0.84 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF623-202 - 536 9.7e-07 29.5 46.7 7 9 0.0009 0.67 10.7 1.1 30 76 367 413 362 421 0.84 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF623-202 - 536 9.7e-07 29.5 46.7 8 9 0.0067 5 7.9 6.4 21 77 386 442 377 474 0.87 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF623-202 - 536 9.7e-07 29.5 46.7 9 9 0.3 2.3e+02 2.6 2.0 40 81 433 474 432 504 0.59 zinc-ribbon family # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF623-202.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF623-202.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF623-202.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF623-202.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF623-202.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:11:15 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZNF623-203 - 496 1.1e-102 332.2 66.0 1 14 0.097 79 3.9 0.0 17 25 85 93 74 93 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF623-203 - 496 1.1e-102 332.2 66.0 2 14 4.7e-10 3.8e-07 30.2 0.0 1 25 97 121 97 122 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF623-203 - 496 1.1e-102 332.2 66.0 3 14 8.5e-09 6.9e-06 26.2 0.5 1 26 125 150 125 150 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF623-203 - 496 1.1e-102 332.2 66.0 4 14 3.3e-09 2.7e-06 27.5 0.7 2 24 154 176 153 177 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF623-203 - 496 1.1e-102 332.2 66.0 5 14 1.1e-10 9.2e-08 32.2 0.3 1 25 181 205 181 206 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF623-203 - 496 1.1e-102 332.2 66.0 6 14 3.4e-11 2.8e-08 33.8 0.2 2 24 210 232 210 234 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF623-203 - 496 1.1e-102 332.2 66.0 7 14 2.5e-08 2e-05 24.8 1.3 2 26 238 262 237 262 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF623-203 - 496 1.1e-102 332.2 66.0 8 14 2e-10 1.6e-07 31.4 0.1 2 24 266 288 265 290 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF623-203 - 496 1.1e-102 332.2 66.0 9 14 6.1e-10 5e-07 29.9 0.2 2 25 294 317 293 318 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF623-203 - 496 1.1e-102 332.2 66.0 10 14 4.5e-10 3.6e-07 30.3 0.5 1 24 321 344 321 345 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF623-203 - 496 1.1e-102 332.2 66.0 11 14 2.6e-10 2.1e-07 31.1 0.2 2 25 350 373 349 374 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF623-203 - 496 1.1e-102 332.2 66.0 12 14 3.3e-09 2.7e-06 27.6 0.4 1 24 377 400 377 402 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF623-203 - 496 1.1e-102 332.2 66.0 13 14 2.3e-09 1.9e-06 28.0 0.1 4 24 408 428 405 430 0.90 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF623-203 - 496 1.1e-102 332.2 66.0 14 14 1.3e-05 0.011 16.2 0.1 2 25 434 457 433 458 0.87 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZNF623-203 - 496 2.9e-80 260.5 83.6 1 13 1.2e-07 0.0001 22.6 0.4 2 23 84 105 84 105 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF623-203 - 496 2.9e-80 260.5 83.6 2 13 2.9e-08 2.4e-05 24.5 0.9 1 23 111 133 111 133 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF623-203 - 496 2.9e-80 260.5 83.6 3 13 2.4e-07 0.00019 21.7 0.3 1 23 139 161 139 161 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF623-203 - 496 2.9e-80 260.5 83.6 4 13 3.2e-08 2.6e-05 24.4 3.4 1 23 167 189 167 189 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF623-203 - 496 2.9e-80 260.5 83.6 5 13 2.3e-09 1.8e-06 28.0 0.3 1 23 195 217 195 217 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF623-203 - 496 2.9e-80 260.5 83.6 6 13 2.8e-09 2.3e-06 27.7 0.5 1 23 223 245 223 245 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF623-203 - 496 2.9e-80 260.5 83.6 7 13 5.6e-09 4.6e-06 26.8 0.9 1 23 251 273 251 273 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF623-203 - 496 2.9e-80 260.5 83.6 8 13 9.2e-09 7.5e-06 26.1 0.2 1 23 279 301 279 301 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF623-203 - 496 2.9e-80 260.5 83.6 9 13 4.3e-09 3.5e-06 27.2 1.4 1 23 307 329 307 329 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF623-203 - 496 2.9e-80 260.5 83.6 10 13 4e-07 0.00032 21.0 0.4 1 23 335 357 335 357 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF623-203 - 496 2.9e-80 260.5 83.6 11 13 1.3e-06 0.0011 19.3 0.7 1 23 363 385 363 385 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF623-203 - 496 2.9e-80 260.5 83.6 12 13 1.9e-07 0.00016 21.9 0.1 1 23 391 413 391 413 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF623-203 - 496 2.9e-80 260.5 83.6 13 13 5e-08 4.1e-05 23.8 0.7 1 23 419 441 419 441 0.98 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZNF623-203 - 496 4.2e-41 136.0 81.5 1 13 6.9e-06 0.0056 17.4 0.1 2 23 84 105 83 106 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF623-203 - 496 4.2e-41 136.0 81.5 2 13 5.7e-05 0.047 14.6 0.6 1 23 111 133 111 134 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF623-203 - 496 4.2e-41 136.0 81.5 3 13 0.00035 0.28 12.1 0.4 1 23 139 161 139 162 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF623-203 - 496 4.2e-41 136.0 81.5 4 13 0.00013 0.1 13.5 3.3 1 23 167 189 167 190 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF623-203 - 496 4.2e-41 136.0 81.5 5 13 5.5e-06 0.0045 17.7 0.4 1 23 195 217 195 218 0.91 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF623-203 - 496 4.2e-41 136.0 81.5 6 13 1.2e-05 0.0095 16.7 0.4 1 23 223 245 223 246 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF623-203 - 496 4.2e-41 136.0 81.5 7 13 0.00016 0.13 13.2 0.7 1 23 251 273 251 274 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF623-203 - 496 4.2e-41 136.0 81.5 8 13 4.8e-05 0.039 14.8 0.3 1 23 279 301 279 302 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF623-203 - 496 4.2e-41 136.0 81.5 9 13 4.8e-05 0.039 14.8 0.9 1 23 307 329 307 330 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF623-203 - 496 4.2e-41 136.0 81.5 10 13 0.00016 0.13 13.2 0.5 1 23 335 357 335 358 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF623-203 - 496 4.2e-41 136.0 81.5 11 13 7e-05 0.057 14.3 1.0 1 23 363 385 363 386 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF623-203 - 496 4.2e-41 136.0 81.5 12 13 0.0006 0.49 11.4 0.2 1 23 391 413 391 414 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF623-203 - 496 4.2e-41 136.0 81.5 13 13 1.8e-05 0.015 16.1 0.6 1 23 419 441 419 442 0.96 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF623-203 - 496 9e-17 60.6 86.4 1 14 0.0008 0.65 10.1 0.0 4 24 85 105 84 108 0.83 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF623-203 - 496 9e-17 60.6 86.4 2 14 0.0029 2.4 8.3 1.0 2 22 111 131 111 135 0.82 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF623-203 - 496 9e-17 60.6 86.4 3 14 0.00016 0.13 12.3 0.3 2 24 139 161 138 164 0.91 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF623-203 - 496 9e-17 60.6 86.4 4 14 0.052 42 4.3 1.5 2 11 167 176 167 190 0.90 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF623-203 - 496 9e-17 60.6 86.4 5 14 0.0017 1.4 9.0 1.1 2 12 195 205 195 207 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF623-203 - 496 9e-17 60.6 86.4 6 14 0.00025 0.2 11.7 0.2 2 11 223 232 223 241 0.83 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF623-203 - 496 9e-17 60.6 86.4 7 14 7.6e-05 0.062 13.3 0.7 2 22 251 271 250 275 0.87 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF623-203 - 496 9e-17 60.6 86.4 8 14 0.0023 1.8 8.6 0.2 2 11 279 288 279 301 0.89 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF623-203 - 496 9e-17 60.6 86.4 9 14 0.0012 0.99 9.5 0.7 2 12 307 317 307 325 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF623-203 - 496 9e-17 60.6 86.4 10 14 0.0018 1.5 8.9 0.3 2 11 335 344 334 344 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF623-203 - 496 9e-17 60.6 86.4 11 14 0.0022 1.8 8.6 3.3 1 11 362 372 362 385 0.92 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF623-203 - 496 9e-17 60.6 86.4 12 14 0.097 79 3.4 1.0 2 11 391 400 391 400 0.95 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF623-203 - 496 9e-17 60.6 86.4 13 14 0.01 8.3 6.5 0.8 2 11 419 428 419 428 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF623-203 - 496 9e-17 60.6 86.4 14 14 8.4 6.8e+03 -2.8 0.0 2 6 447 451 446 458 0.75 C2H2-type zinc finger zf_UBZ PF18439.1 32 ZNF623-203 - 496 2.5e-13 49.4 53.8 1 13 0.052 42 3.8 0.0 4 14 84 94 81 102 0.79 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF623-203 - 496 2.5e-13 49.4 53.8 2 13 0.00046 0.38 10.4 0.2 3 21 111 130 109 130 0.91 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF623-203 - 496 2.5e-13 49.4 53.8 3 13 0.17 1.4e+02 2.2 0.0 3 21 139 158 137 158 0.82 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF623-203 - 496 2.5e-13 49.4 53.8 4 13 0.031 25 4.5 0.8 3 17 167 182 165 186 0.75 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF623-203 - 496 2.5e-13 49.4 53.8 5 13 0.01 8.5 6.1 0.1 3 16 195 208 193 214 0.83 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF623-203 - 496 2.5e-13 49.4 53.8 6 13 0.021 17 5.1 0.1 3 14 223 234 221 241 0.83 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF623-203 - 496 2.5e-13 49.4 53.8 7 13 0.00053 0.43 10.2 0.8 2 21 250 270 249 270 0.93 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF623-203 - 496 2.5e-13 49.4 53.8 8 13 0.02 16 5.2 0.1 3 21 279 298 277 298 0.84 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF623-203 - 496 2.5e-13 49.4 53.8 9 13 0.0002 0.16 11.6 0.1 3 21 307 326 305 326 0.93 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF623-203 - 496 2.5e-13 49.4 53.8 10 13 0.081 66 3.2 0.1 3 12 335 344 333 349 0.86 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF623-203 - 496 2.5e-13 49.4 53.8 11 13 0.00092 0.75 9.4 0.4 3 21 363 382 362 382 0.94 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF623-203 - 496 2.5e-13 49.4 53.8 12 13 0.019 15 5.2 0.1 3 16 391 405 389 410 0.78 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF623-203 - 496 2.5e-13 49.4 53.8 13 13 0.038 31 4.3 0.0 3 20 419 437 417 438 0.79 Ubiquitin-Binding Zinc Finger XPA_N PF01286.18 32 ZNF623-203 - 496 1e-12 47.8 55.1 1 13 0.28 2.3e+02 1.9 0.1 4 12 85 93 82 96 0.87 XPA protein N-terminal XPA_N PF01286.18 32 ZNF623-203 - 496 1e-12 47.8 55.1 2 13 0.002 1.7 8.8 0.1 3 14 112 123 110 129 0.84 XPA protein N-terminal XPA_N PF01286.18 32 ZNF623-203 - 496 1e-12 47.8 55.1 3 13 1.1 8.7e+02 0.1 0.1 3 11 140 148 138 150 0.62 XPA protein N-terminal XPA_N PF01286.18 32 ZNF623-203 - 496 1e-12 47.8 55.1 4 13 0.036 29 4.8 1.7 3 14 168 179 166 180 0.92 XPA protein N-terminal XPA_N PF01286.18 32 ZNF623-203 - 496 1e-12 47.8 55.1 5 13 0.00036 0.29 11.2 0.2 3 17 196 210 194 212 0.92 XPA protein N-terminal XPA_N PF01286.18 32 ZNF623-203 - 496 1e-12 47.8 55.1 6 13 0.005 4.1 7.5 0.1 3 14 224 235 222 244 0.82 XPA protein N-terminal XPA_N PF01286.18 32 ZNF623-203 - 496 1e-12 47.8 55.1 7 13 0.011 8.8 6.5 0.2 3 11 252 260 250 268 0.90 XPA protein N-terminal XPA_N PF01286.18 32 ZNF623-203 - 496 1e-12 47.8 55.1 8 13 0.005 4.1 7.5 0.1 3 14 280 291 278 297 0.84 XPA protein N-terminal XPA_N PF01286.18 32 ZNF623-203 - 496 1e-12 47.8 55.1 9 13 0.014 11 6.1 0.1 3 13 308 318 306 321 0.87 XPA protein N-terminal XPA_N PF01286.18 32 ZNF623-203 - 496 1e-12 47.8 55.1 10 13 0.0012 1 9.5 0.2 3 18 336 352 335 354 0.80 XPA protein N-terminal XPA_N PF01286.18 32 ZNF623-203 - 496 1e-12 47.8 55.1 11 13 0.0059 4.8 7.3 0.3 3 12 364 373 363 376 0.90 XPA protein N-terminal XPA_N PF01286.18 32 ZNF623-203 - 496 1e-12 47.8 55.1 12 13 0.0053 4.3 7.5 0.2 3 14 392 403 390 409 0.86 XPA protein N-terminal XPA_N PF01286.18 32 ZNF623-203 - 496 1e-12 47.8 55.1 13 13 1 8.2e+02 0.2 0.0 3 12 420 429 418 431 0.85 XPA protein N-terminal Zn-ribbon_8 PF09723.10 40 ZNF623-203 - 496 1.9e-12 47.1 63.7 1 11 0.00032 0.26 11.4 0.2 8 34 85 118 83 122 0.92 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF623-203 - 496 1.9e-12 47.1 63.7 2 11 0.0051 4.2 7.6 3.0 6 34 139 174 138 177 0.88 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF623-203 - 496 1.9e-12 47.1 63.7 3 11 0.013 11 6.3 6.2 6 34 167 202 166 205 0.88 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF623-203 - 496 1.9e-12 47.1 63.7 4 11 8.8e-05 0.072 13.2 3.7 6 35 195 231 194 236 0.91 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF623-203 - 496 1.9e-12 47.1 63.7 5 11 0.00013 0.11 12.7 5.3 5 35 250 287 249 291 0.89 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF623-203 - 496 1.9e-12 47.1 63.7 6 11 0.033 27 5.0 0.4 6 16 279 289 278 301 0.82 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF623-203 - 496 1.9e-12 47.1 63.7 7 11 9.8e-05 0.08 13.1 4.9 6 34 307 342 306 345 0.87 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF623-203 - 496 1.9e-12 47.1 63.7 8 11 8.6e-05 0.07 13.3 4.3 6 35 335 372 334 377 0.90 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF623-203 - 496 1.9e-12 47.1 63.7 9 11 0.00046 0.38 10.9 4.9 6 34 363 398 362 402 0.89 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF623-203 - 496 1.9e-12 47.1 63.7 10 11 0.001 0.85 9.8 1.3 6 34 391 426 390 432 0.84 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF623-203 - 496 1.9e-12 47.1 63.7 11 11 0.098 80 3.5 0.8 6 29 419 449 418 456 0.77 Zinc ribbon domain zf-C2H2_jaz PF12171.8 27 ZNF623-203 - 496 3.1e-12 46.4 55.2 1 13 0.03 24 5.4 0.0 4 24 85 105 84 106 0.89 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF623-203 - 496 3.1e-12 46.4 55.2 2 13 0.065 53 4.3 0.0 2 22 111 131 110 131 0.89 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF623-203 - 496 3.1e-12 46.4 55.2 3 13 0.55 4.4e+02 1.3 0.2 3 13 140 150 139 159 0.75 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF623-203 - 496 3.1e-12 46.4 55.2 4 13 0.47 3.8e+02 1.5 0.8 2 21 167 186 166 187 0.87 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF623-203 - 496 3.1e-12 46.4 55.2 5 13 0.001 0.83 10.0 0.0 2 22 195 215 194 215 0.90 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF623-203 - 496 3.1e-12 46.4 55.2 6 13 0.00042 0.34 11.2 0.1 2 21 223 242 222 243 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF623-203 - 496 3.1e-12 46.4 55.2 7 13 0.00056 0.46 10.8 0.5 1 22 250 271 250 271 0.95 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF623-203 - 496 3.1e-12 46.4 55.2 8 13 0.00098 0.8 10.1 0.1 2 22 279 299 278 299 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF623-203 - 496 3.1e-12 46.4 55.2 9 13 0.039 32 5.0 0.3 2 22 307 327 306 327 0.91 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF623-203 - 496 3.1e-12 46.4 55.2 10 13 1.4 1.1e+03 0.0 0.4 2 11 335 344 334 355 0.76 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF623-203 - 496 3.1e-12 46.4 55.2 11 13 0.059 48 4.4 0.8 2 22 363 383 362 383 0.84 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF623-203 - 496 3.1e-12 46.4 55.2 12 13 0.041 33 4.9 0.1 2 20 391 409 390 410 0.84 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF623-203 - 496 3.1e-12 46.4 55.2 13 13 0.0011 0.87 10.0 0.2 2 22 419 439 418 439 0.93 Zinc-finger double-stranded RNA-binding DZR PF12773.7 49 ZNF623-203 - 496 3.1e-10 39.9 38.9 1 2 0.00091 0.74 9.9 0.2 8 36 78 118 74 126 0.83 Double zinc ribbon DZR PF12773.7 49 ZNF623-203 - 496 3.1e-10 39.9 38.9 2 2 0.023 19 5.4 5.6 13 49 139 201 129 201 0.76 Double zinc ribbon Zn_Tnp_IS1595 PF12760.7 46 ZNF623-203 - 496 2e-08 34.0 60.5 1 11 0.46 3.8e+02 1.2 0.9 30 45 101 118 81 119 0.74 Transposase zinc-ribbon domain Zn_Tnp_IS1595 PF12760.7 46 ZNF623-203 - 496 2e-08 34.0 60.5 2 11 0.21 1.7e+02 2.3 2.1 20 45 112 146 107 147 0.66 Transposase zinc-ribbon domain Zn_Tnp_IS1595 PF12760.7 46 ZNF623-203 - 496 2e-08 34.0 60.5 3 11 0.054 44 4.2 2.9 19 45 139 174 125 175 0.75 Transposase zinc-ribbon domain Zn_Tnp_IS1595 PF12760.7 46 ZNF623-203 - 496 2e-08 34.0 60.5 4 11 0.052 42 4.2 7.9 19 45 167 202 164 203 0.70 Transposase zinc-ribbon domain Zn_Tnp_IS1595 PF12760.7 46 ZNF623-203 - 496 2e-08 34.0 60.5 5 11 0.018 15 5.7 0.2 31 45 215 230 206 231 0.75 Transposase zinc-ribbon domain Zn_Tnp_IS1595 PF12760.7 46 ZNF623-203 - 496 2e-08 34.0 60.5 6 11 0.00034 0.27 11.2 0.6 28 45 240 258 234 259 0.87 Transposase zinc-ribbon domain Zn_Tnp_IS1595 PF12760.7 46 ZNF623-203 - 496 2e-08 34.0 60.5 7 11 0.03 24 5.0 0.1 31 45 271 286 263 287 0.76 Transposase zinc-ribbon domain Zn_Tnp_IS1595 PF12760.7 46 ZNF623-203 - 496 2e-08 34.0 60.5 8 11 4.1e-05 0.033 14.2 2.0 19 45 307 342 292 343 0.87 Transposase zinc-ribbon domain Zn_Tnp_IS1595 PF12760.7 46 ZNF623-203 - 496 2e-08 34.0 60.5 9 11 0.0029 2.4 8.2 0.2 34 45 353 370 346 371 0.72 Transposase zinc-ribbon domain Zn_Tnp_IS1595 PF12760.7 46 ZNF623-203 - 496 2e-08 34.0 60.5 10 11 0.097 79 3.3 0.1 35 45 388 398 374 399 0.75 Transposase zinc-ribbon domain Zn_Tnp_IS1595 PF12760.7 46 ZNF623-203 - 496 2e-08 34.0 60.5 11 11 0.0025 2 8.4 0.1 19 41 419 450 404 451 0.84 Transposase zinc-ribbon domain zinc_ribbon_15 PF17032.5 86 ZNF623-203 - 496 5.9e-07 30.2 47.0 1 10 0.72 5.9e+02 1.3 0.1 25 78 42 95 32 102 0.65 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF623-203 - 496 5.9e-07 30.2 47.0 2 10 0.0059 4.8 8.0 0.4 37 74 110 147 102 152 0.84 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF623-203 - 496 5.9e-07 30.2 47.0 3 10 0.0061 4.9 8.0 2.2 30 77 159 206 154 209 0.85 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF623-203 - 496 5.9e-07 30.2 47.0 4 10 0.00022 0.18 12.5 1.7 30 77 215 262 207 266 0.86 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF623-203 - 496 5.9e-07 30.2 47.0 5 10 0.00037 0.31 11.8 1.1 30 81 271 322 265 325 0.85 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF623-203 - 496 5.9e-07 30.2 47.0 6 10 0.00079 0.65 10.8 1.2 30 74 299 343 294 348 0.84 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF623-203 - 496 5.9e-07 30.2 47.0 7 10 0.00083 0.68 10.7 1.4 30 76 327 373 320 381 0.84 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF623-203 - 496 5.9e-07 30.2 47.0 8 10 0.0013 1 10.1 4.2 21 77 346 402 337 406 0.84 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF623-203 - 496 5.9e-07 30.2 47.0 9 10 0.025 21 6.0 0.5 31 81 384 434 374 437 0.78 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF623-203 - 496 5.9e-07 30.2 47.0 10 10 0.28 2.3e+02 2.6 0.2 33 74 416 455 403 464 0.72 zinc-ribbon family # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF623-203.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF623-203.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF623-203.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF623-203.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF623-203.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:11:16 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZNF624-201 - 865 1.1e-159 512.5 157.2 1 22 0.0004 0.4 11.2 3.5 11 24 272 285 267 287 0.90 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF624-201 - 865 1.1e-159 512.5 157.2 2 22 1.4e-10 1.4e-07 31.7 1.1 3 25 292 314 291 315 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF624-201 - 865 1.1e-159 512.5 157.2 3 22 7.1e-11 7.1e-08 32.5 0.9 2 24 319 341 318 342 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF624-201 - 865 1.1e-159 512.5 157.2 4 22 7.2e-11 7.2e-08 32.5 0.3 1 25 346 370 346 371 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF624-201 - 865 1.1e-159 512.5 157.2 5 22 1.4e-10 1.3e-07 31.7 0.1 2 25 375 398 374 399 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF624-201 - 865 1.1e-159 512.5 157.2 6 22 8.7e-10 8.7e-07 29.1 0.6 2 26 403 427 402 427 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF624-201 - 865 1.1e-159 512.5 157.2 7 22 2.4e-10 2.4e-07 30.9 1.9 2 26 431 455 430 455 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF624-201 - 865 1.1e-159 512.5 157.2 8 22 2.6e-09 2.6e-06 27.6 0.6 3 25 460 482 459 483 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF624-201 - 865 1.1e-159 512.5 157.2 9 22 1e-11 1e-08 35.2 0.2 2 25 487 510 486 511 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF624-201 - 865 1.1e-159 512.5 157.2 10 22 4.3e-11 4.3e-08 33.2 0.6 1 25 514 538 514 539 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF624-201 - 865 1.1e-159 512.5 157.2 11 22 5.2e-09 5.2e-06 26.6 2.6 2 24 543 565 543 565 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF624-201 - 865 1.1e-159 512.5 157.2 12 22 7.1e-07 0.00071 19.9 0.1 5 24 574 593 570 594 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF624-201 - 865 1.1e-159 512.5 157.2 13 22 8.8e-10 8.8e-07 29.1 1.9 1 26 598 623 598 623 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF624-201 - 865 1.1e-159 512.5 157.2 14 22 5.2e-10 5.1e-07 29.8 1.5 1 25 626 650 626 651 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF624-201 - 865 1.1e-159 512.5 157.2 15 22 8.3e-11 8.2e-08 32.3 1.0 4 26 657 679 654 679 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF624-201 - 865 1.1e-159 512.5 157.2 16 22 8.3e-11 8.2e-08 32.3 0.9 2 26 683 707 682 707 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF624-201 - 865 1.1e-159 512.5 157.2 17 22 9.6e-11 9.6e-08 32.1 0.8 2 25 711 734 710 735 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF624-201 - 865 1.1e-159 512.5 157.2 18 22 1.6e-09 1.6e-06 28.3 1.7 3 25 740 762 738 763 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF624-201 - 865 1.1e-159 512.5 157.2 19 22 3.7e-08 3.7e-05 24.0 1.6 2 23 767 788 766 791 0.89 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF624-201 - 865 1.1e-159 512.5 157.2 20 22 7.7e-11 7.6e-08 32.4 0.4 2 25 795 818 794 819 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF624-201 - 865 1.1e-159 512.5 157.2 21 22 1.1e-10 1.1e-07 32.0 0.8 2 25 823 846 822 847 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF624-201 - 865 1.1e-159 512.5 157.2 22 22 1.8 1.8e+03 -0.3 0.1 2 13 851 862 850 864 0.83 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZNF624-201 - 865 2.5e-125 402.4 158.8 1 21 1.9e-06 0.0019 18.6 3.7 1 23 276 298 276 298 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF624-201 - 865 2.5e-125 402.4 158.8 2 21 3.2e-08 3.1e-05 24.2 0.8 1 23 304 326 304 326 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF624-201 - 865 2.5e-125 402.4 158.8 3 21 5.3e-09 5.2e-06 26.6 0.1 1 23 332 354 332 354 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF624-201 - 865 2.5e-125 402.4 158.8 4 21 6.7e-07 0.00067 20.0 1.1 1 21 360 380 360 381 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF624-201 - 865 2.5e-125 402.4 158.8 5 21 5.6e-09 5.6e-06 26.5 0.6 1 23 388 410 388 410 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF624-201 - 865 2.5e-125 402.4 158.8 6 21 1.8e-09 1.8e-06 28.1 1.3 1 23 416 438 416 438 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF624-201 - 865 2.5e-125 402.4 158.8 7 21 9.4e-07 0.00093 19.5 0.9 1 23 444 466 444 466 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF624-201 - 865 2.5e-125 402.4 158.8 8 21 2.8e-09 2.8e-06 27.5 0.4 1 23 472 494 472 494 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF624-201 - 865 2.5e-125 402.4 158.8 9 21 8.2e-08 8.2e-05 22.8 0.2 1 23 500 522 500 522 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF624-201 - 865 2.5e-125 402.4 158.8 10 21 5.5e-07 0.00055 20.3 4.3 1 23 528 550 528 550 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF624-201 - 865 2.5e-125 402.4 158.8 11 21 1.5e-08 1.5e-05 25.1 0.4 1 23 556 578 556 578 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF624-201 - 865 2.5e-125 402.4 158.8 12 21 1.2e-07 0.00012 22.3 1.1 1 23 584 606 584 606 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF624-201 - 865 2.5e-125 402.4 158.8 13 21 7.2e-07 0.00072 19.9 0.8 1 23 612 634 612 634 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF624-201 - 865 2.5e-125 402.4 158.8 14 21 6.3e-10 6.2e-07 29.5 2.4 1 23 640 662 640 662 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF624-201 - 865 2.5e-125 402.4 158.8 15 21 4.8e-09 4.8e-06 26.7 1.3 1 23 668 690 668 690 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF624-201 - 865 2.5e-125 402.4 158.8 16 21 4.1e-09 4.1e-06 27.0 1.4 1 23 696 718 696 718 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF624-201 - 865 2.5e-125 402.4 158.8 17 21 8.3e-07 0.00083 19.7 1.1 1 23 724 746 724 746 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF624-201 - 865 2.5e-125 402.4 158.8 18 21 2.4e-08 2.4e-05 24.5 0.5 1 23 752 774 752 774 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF624-201 - 865 2.5e-125 402.4 158.8 19 21 3.9e-07 0.00039 20.7 1.2 1 23 780 802 780 802 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF624-201 - 865 2.5e-125 402.4 158.8 20 21 2.5e-09 2.5e-06 27.6 0.8 1 23 808 830 808 830 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF624-201 - 865 2.5e-125 402.4 158.8 21 21 8.3e-10 8.3e-07 29.1 0.7 1 23 836 858 836 858 0.99 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZNF624-201 - 865 1.5e-65 212.1 148.5 1 21 0.00082 0.82 10.7 2.8 1 23 276 298 276 299 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF624-201 - 865 1.5e-65 212.1 148.5 2 21 4.9e-06 0.0049 17.6 0.7 1 23 304 326 304 327 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF624-201 - 865 1.5e-65 212.1 148.5 3 21 0.00028 0.27 12.2 0.2 1 23 332 354 332 355 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF624-201 - 865 1.5e-65 212.1 148.5 4 21 1.4e-05 0.014 16.2 0.9 1 21 360 380 360 382 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF624-201 - 865 1.5e-65 212.1 148.5 5 21 5e-07 0.0005 20.7 0.6 1 23 388 410 388 411 0.97 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF624-201 - 865 1.5e-65 212.1 148.5 6 21 2.1e-06 0.0021 18.7 0.9 1 23 416 438 416 439 0.97 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF624-201 - 865 1.5e-65 212.1 148.5 7 21 0.00015 0.15 13.0 0.5 1 23 444 466 444 467 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF624-201 - 865 1.5e-65 212.1 148.5 8 21 4.3e-06 0.0042 17.8 0.3 1 23 472 494 472 495 0.97 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF624-201 - 865 1.5e-65 212.1 148.5 9 21 0.00083 0.83 10.7 0.1 1 23 500 522 500 523 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF624-201 - 865 1.5e-65 212.1 148.5 10 21 0.00072 0.71 10.9 3.3 1 23 528 550 528 551 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF624-201 - 865 1.5e-65 212.1 148.5 11 21 3.6e-05 0.036 14.9 0.3 1 23 556 578 556 579 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF624-201 - 865 1.5e-65 212.1 148.5 12 21 0.00046 0.46 11.5 0.9 1 23 584 606 584 607 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF624-201 - 865 1.5e-65 212.1 148.5 13 21 0.00032 0.32 11.9 0.6 1 23 612 634 612 635 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF624-201 - 865 1.5e-65 212.1 148.5 14 21 3.4e-06 0.0033 18.1 1.4 1 23 640 662 640 663 0.97 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF624-201 - 865 1.5e-65 212.1 148.5 15 21 3.2e-05 0.032 15.1 0.9 1 23 668 690 668 691 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF624-201 - 865 1.5e-65 212.1 148.5 16 21 8.7e-07 0.00087 19.9 0.8 1 23 696 718 696 719 0.97 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF624-201 - 865 1.5e-65 212.1 148.5 17 21 0.00072 0.72 10.9 1.1 1 23 724 746 724 747 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF624-201 - 865 1.5e-65 212.1 148.5 18 21 5.5e-06 0.0055 17.5 0.5 1 23 752 774 752 775 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF624-201 - 865 1.5e-65 212.1 148.5 19 21 0.0048 4.8 8.3 1.0 1 23 780 802 780 803 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF624-201 - 865 1.5e-65 212.1 148.5 20 21 3.1e-06 0.0031 18.2 0.6 1 23 808 830 808 831 0.97 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF624-201 - 865 1.5e-65 212.1 148.5 21 21 8.4e-06 0.0084 16.9 0.7 1 23 836 858 836 859 0.96 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF624-201 - 865 3e-26 90.8 144.7 1 21 0.0023 2.3 8.3 3.8 2 26 276 300 276 301 0.91 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF624-201 - 865 3e-26 90.8 144.7 2 21 0.00035 0.35 10.9 0.8 2 12 304 314 304 327 0.85 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF624-201 - 865 3e-26 90.8 144.7 3 21 0.004 4 7.6 0.2 2 11 332 341 332 356 0.88 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF624-201 - 865 3e-26 90.8 144.7 4 21 0.0013 1.3 9.1 1.3 2 12 360 370 360 380 0.85 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF624-201 - 865 3e-26 90.8 144.7 5 21 0.0021 2.1 8.4 1.0 2 12 388 398 388 398 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF624-201 - 865 3e-26 90.8 144.7 6 21 0.033 33 4.6 0.5 2 12 416 426 416 438 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF624-201 - 865 3e-26 90.8 144.7 7 21 0.0021 2.1 8.5 1.1 2 12 444 454 444 455 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF624-201 - 865 3e-26 90.8 144.7 8 21 6.6e-05 0.066 13.2 0.2 2 24 472 494 472 497 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF624-201 - 865 3e-26 90.8 144.7 9 21 7.2e-05 0.072 13.1 0.2 2 22 500 520 500 524 0.87 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF624-201 - 865 3e-26 90.8 144.7 10 21 0.012 12 6.0 1.7 2 11 528 537 528 550 0.91 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF624-201 - 865 3e-26 90.8 144.7 11 21 0.0011 1.1 9.4 0.2 2 20 556 574 556 581 0.78 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF624-201 - 865 3e-26 90.8 144.7 12 21 0.011 11 6.2 0.4 2 12 584 594 584 594 0.91 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF624-201 - 865 3e-26 90.8 144.7 13 21 0.0027 2.7 8.1 0.5 2 24 612 634 612 636 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF624-201 - 865 3e-26 90.8 144.7 14 21 0.02 20 5.3 1.3 2 24 640 662 640 665 0.85 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF624-201 - 865 3e-26 90.8 144.7 15 21 0.0064 6.4 6.9 0.7 2 24 668 690 668 693 0.75 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF624-201 - 865 3e-26 90.8 144.7 16 21 1.2e-05 0.012 15.5 1.4 2 24 696 718 696 721 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF624-201 - 865 3e-26 90.8 144.7 17 21 0.086 86 3.3 0.6 2 12 724 734 724 747 0.87 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF624-201 - 865 3e-26 90.8 144.7 18 21 3.8e-05 0.038 14.0 0.3 2 24 752 774 752 777 0.89 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF624-201 - 865 3e-26 90.8 144.7 19 21 0.15 1.4e+02 2.6 0.7 2 9 780 787 780 788 0.91 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF624-201 - 865 3e-26 90.8 144.7 20 21 0.0025 2.4 8.2 0.4 2 13 808 819 808 831 0.88 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF624-201 - 865 3e-26 90.8 144.7 21 21 2.2e-05 0.022 14.7 1.1 2 26 836 860 836 861 0.90 C2H2-type zinc finger KRAB PF01352.27 42 ZNF624-201 - 865 2.9e-25 87.6 0.1 1 1 5.7e-28 5.7e-25 86.7 0.1 1 42 53 94 53 94 0.99 KRAB box Zn-ribbon_8 PF09723.10 40 ZNF624-201 - 865 8e-25 86.7 110.5 1 18 0.0026 2.6 8.3 5.1 6 35 276 312 275 315 0.87 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF624-201 - 865 8e-25 86.7 110.5 2 18 0.00019 0.19 11.9 5.0 6 34 304 339 303 341 0.89 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF624-201 - 865 8e-25 86.7 110.5 3 18 1.8e-05 0.018 15.1 1.6 6 35 332 368 331 375 0.90 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF624-201 - 865 8e-25 86.7 110.5 4 18 0.00036 0.36 11.0 4.0 6 35 360 396 359 400 0.89 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF624-201 - 865 8e-25 86.7 110.5 5 18 0.00022 0.22 11.6 4.4 6 36 388 425 387 427 0.87 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF624-201 - 865 8e-25 86.7 110.5 6 18 2.2e-05 0.022 14.8 4.5 6 34 416 451 415 454 0.88 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF624-201 - 865 8e-25 86.7 110.5 7 18 9.4e-06 0.0094 16.1 2.2 6 36 444 481 443 483 0.92 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF624-201 - 865 8e-25 86.7 110.5 8 18 2.9e-05 0.029 14.5 4.3 6 34 500 535 499 538 0.88 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF624-201 - 865 8e-25 86.7 110.5 9 18 7.2e-05 0.072 13.2 4.2 6 36 528 565 527 569 0.91 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF624-201 - 865 8e-25 86.7 110.5 10 18 4.7e-06 0.0047 17.0 1.5 6 35 556 592 555 597 0.90 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF624-201 - 865 8e-25 86.7 110.5 11 18 0.00041 0.41 10.8 3.5 6 35 612 648 610 652 0.75 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF624-201 - 865 8e-25 86.7 110.5 12 18 0.0013 1.3 9.2 4.2 6 34 640 675 637 680 0.91 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF624-201 - 865 8e-25 86.7 110.5 13 18 0.0017 1.6 8.9 6.2 6 34 668 703 665 709 0.91 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF624-201 - 865 8e-25 86.7 110.5 14 18 0.002 2 8.6 0.4 6 17 696 707 695 719 0.82 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF624-201 - 865 8e-25 86.7 110.5 15 18 3.8e-06 0.0038 17.3 1.7 6 38 724 763 723 764 0.87 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF624-201 - 865 8e-25 86.7 110.5 16 18 0.0016 1.6 8.9 3.1 6 34 752 787 751 792 0.83 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF624-201 - 865 8e-25 86.7 110.5 17 18 4.1e-05 0.041 14.0 4.0 6 36 808 845 807 849 0.87 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF624-201 - 865 8e-25 86.7 110.5 18 18 0.0048 4.8 7.4 0.2 6 16 836 846 835 861 0.75 Zinc ribbon domain zf-C2H2_jaz PF12171.8 27 ZNF624-201 - 865 7.5e-19 67.5 97.8 1 20 0.021 21 5.6 1.3 2 24 276 298 275 300 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF624-201 - 865 7.5e-19 67.5 97.8 2 20 0.0071 7 7.1 0.2 2 22 304 324 303 324 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF624-201 - 865 7.5e-19 67.5 97.8 3 20 0.037 37 4.8 0.0 2 22 332 352 331 352 0.91 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF624-201 - 865 7.5e-19 67.5 97.8 4 20 1.7 1.7e+03 -0.6 0.6 4 12 362 370 359 380 0.82 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF624-201 - 865 7.5e-19 67.5 97.8 5 20 0.0054 5.4 7.4 0.7 2 24 388 410 387 411 0.91 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF624-201 - 865 7.5e-19 67.5 97.8 6 20 0.0076 7.6 7.0 0.9 2 24 416 438 415 438 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF624-201 - 865 7.5e-19 67.5 97.8 7 20 0.033 33 4.9 0.4 4 21 446 463 443 464 0.86 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF624-201 - 865 7.5e-19 67.5 97.8 8 20 0.0011 1.1 9.7 0.1 2 24 472 494 471 494 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF624-201 - 865 7.5e-19 67.5 97.8 9 20 0.0032 3.2 8.2 0.2 2 22 500 520 499 520 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF624-201 - 865 7.5e-19 67.5 97.8 10 20 0.35 3.5e+02 1.7 0.4 2 13 528 539 527 539 0.91 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF624-201 - 865 7.5e-19 67.5 97.8 11 20 0.15 1.5e+02 2.9 0.0 2 21 556 575 555 576 0.82 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF624-201 - 865 7.5e-19 67.5 97.8 12 20 0.007 6.9 7.1 0.4 2 22 612 632 611 632 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF624-201 - 865 7.5e-19 67.5 97.8 13 20 0.007 6.9 7.1 0.6 2 24 640 662 639 662 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF624-201 - 865 7.5e-19 67.5 97.8 14 20 0.0023 2.2 8.6 0.3 2 22 668 688 667 688 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF624-201 - 865 7.5e-19 67.5 97.8 15 20 0.00086 0.86 10.0 0.5 2 24 696 718 695 718 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF624-201 - 865 7.5e-19 67.5 97.8 16 20 1.9 1.9e+03 -0.7 0.4 2 14 724 736 723 744 0.74 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF624-201 - 865 7.5e-19 67.5 97.8 17 20 0.017 17 5.8 0.0 2 24 752 774 751 774 0.91 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF624-201 - 865 7.5e-19 67.5 97.8 18 20 0.0018 1.8 8.9 0.0 2 22 780 800 779 800 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF624-201 - 865 7.5e-19 67.5 97.8 19 20 0.00015 0.15 12.4 0.0 2 22 808 828 807 828 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF624-201 - 865 7.5e-19 67.5 97.8 20 20 0.0012 1.2 9.5 0.0 2 22 836 856 835 856 0.93 Zinc-finger double-stranded RNA-binding XPA_N PF01286.18 32 ZNF624-201 - 865 4.5e-12 45.8 89.2 1 21 0.27 2.7e+02 1.7 0.1 3 12 277 286 275 294 0.83 XPA protein N-terminal XPA_N PF01286.18 32 ZNF624-201 - 865 4.5e-12 45.8 89.2 2 21 0.0017 1.7 8.8 0.2 3 19 305 322 303 322 0.84 XPA protein N-terminal XPA_N PF01286.18 32 ZNF624-201 - 865 4.5e-12 45.8 89.2 3 21 0.0076 7.6 6.7 0.1 3 14 333 344 331 348 0.88 XPA protein N-terminal XPA_N PF01286.18 32 ZNF624-201 - 865 4.5e-12 45.8 89.2 4 21 0.99 9.9e+02 -0.1 0.1 3 12 361 370 359 371 0.75 XPA protein N-terminal XPA_N PF01286.18 32 ZNF624-201 - 865 4.5e-12 45.8 89.2 5 21 0.004 3.9 7.6 0.2 3 13 389 399 387 406 0.82 XPA protein N-terminal XPA_N PF01286.18 32 ZNF624-201 - 865 4.5e-12 45.8 89.2 6 21 0.0027 2.7 8.1 0.1 3 17 417 432 415 434 0.79 XPA protein N-terminal XPA_N PF01286.18 32 ZNF624-201 - 865 4.5e-12 45.8 89.2 7 21 0.013 13 5.9 0.1 3 14 445 456 443 462 0.83 XPA protein N-terminal XPA_N PF01286.18 32 ZNF624-201 - 865 4.5e-12 45.8 89.2 8 21 0.5 5e+02 0.8 0.1 3 10 473 480 472 483 0.87 XPA protein N-terminal XPA_N PF01286.18 32 ZNF624-201 - 865 4.5e-12 45.8 89.2 9 21 0.031 30 4.7 0.2 3 11 501 509 499 511 0.88 XPA protein N-terminal XPA_N PF01286.18 32 ZNF624-201 - 865 4.5e-12 45.8 89.2 10 21 0.02 20 5.3 0.1 3 12 529 538 527 540 0.88 XPA protein N-terminal XPA_N PF01286.18 32 ZNF624-201 - 865 4.5e-12 45.8 89.2 11 21 0.002 1.9 8.6 0.1 3 14 557 568 555 569 0.91 XPA protein N-terminal XPA_N PF01286.18 32 ZNF624-201 - 865 4.5e-12 45.8 89.2 12 21 0.34 3.4e+02 1.4 0.2 4 11 586 593 584 597 0.90 XPA protein N-terminal XPA_N PF01286.18 32 ZNF624-201 - 865 4.5e-12 45.8 89.2 13 21 0.47 4.7e+02 1.0 0.2 3 12 613 622 611 623 0.88 XPA protein N-terminal XPA_N PF01286.18 32 ZNF624-201 - 865 4.5e-12 45.8 89.2 14 21 0.033 33 4.6 0.1 3 16 641 655 639 658 0.79 XPA protein N-terminal XPA_N PF01286.18 32 ZNF624-201 - 865 4.5e-12 45.8 89.2 15 21 0.017 17 5.6 0.2 3 13 669 679 667 684 0.85 XPA protein N-terminal XPA_N PF01286.18 32 ZNF624-201 - 865 4.5e-12 45.8 89.2 16 21 0.07 69 3.6 0.1 3 12 697 706 695 708 0.87 XPA protein N-terminal XPA_N PF01286.18 32 ZNF624-201 - 865 4.5e-12 45.8 89.2 17 21 0.085 85 3.3 0.5 3 12 725 734 723 735 0.89 XPA protein N-terminal XPA_N PF01286.18 32 ZNF624-201 - 865 4.5e-12 45.8 89.2 18 21 0.041 40 4.4 0.0 3 16 753 767 751 772 0.77 XPA protein N-terminal XPA_N PF01286.18 32 ZNF624-201 - 865 4.5e-12 45.8 89.2 19 21 0.33 3.3e+02 1.4 0.7 3 9 781 787 779 792 0.88 XPA protein N-terminal XPA_N PF01286.18 32 ZNF624-201 - 865 4.5e-12 45.8 89.2 20 21 0.0065 6.5 6.9 0.2 3 12 809 818 807 820 0.88 XPA protein N-terminal XPA_N PF01286.18 32 ZNF624-201 - 865 4.5e-12 45.8 89.2 21 21 0.0057 5.7 7.1 0.2 3 14 837 848 835 852 0.90 XPA protein N-terminal zf-C2H2_11 PF16622.5 29 ZNF624-201 - 865 1.3e-08 34.5 81.6 1 19 0.0083 8.2 6.3 0.1 6 26 305 325 302 326 0.89 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF624-201 - 865 1.3e-08 34.5 81.6 2 19 0.0059 5.9 6.7 0.1 5 26 332 353 329 356 0.90 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF624-201 - 865 1.3e-08 34.5 81.6 3 19 0.0045 4.5 7.1 1.0 5 26 360 381 357 382 0.93 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF624-201 - 865 1.3e-08 34.5 81.6 4 19 0.0017 1.7 8.5 0.1 5 23 388 406 385 408 0.93 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF624-201 - 865 1.3e-08 34.5 81.6 5 19 0.63 6.3e+02 0.3 0.1 5 14 416 425 413 435 0.78 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF624-201 - 865 1.3e-08 34.5 81.6 6 19 0.041 41 4.1 0.0 5 14 444 453 440 465 0.82 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF624-201 - 865 1.3e-08 34.5 81.6 7 19 0.0018 1.8 8.4 0.0 5 24 472 491 469 493 0.88 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF624-201 - 865 1.3e-08 34.5 81.6 8 19 1.3 1.3e+03 -0.7 0.0 6 14 501 509 499 518 0.88 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF624-201 - 865 1.3e-08 34.5 81.6 9 19 0.27 2.7e+02 1.4 0.3 5 14 528 537 525 549 0.81 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF624-201 - 865 1.3e-08 34.5 81.6 10 19 0.01 10 6.0 0.3 5 26 556 577 553 578 0.86 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF624-201 - 865 1.3e-08 34.5 81.6 11 19 0.48 4.8e+02 0.6 0.3 7 26 586 605 583 606 0.85 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF624-201 - 865 1.3e-08 34.5 81.6 12 19 0.0025 2.5 7.9 0.0 5 26 612 633 609 634 0.91 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF624-201 - 865 1.3e-08 34.5 81.6 13 19 0.52 5.2e+02 0.5 0.2 5 14 640 649 639 655 0.87 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF624-201 - 865 1.3e-08 34.5 81.6 14 19 0.44 4.4e+02 0.8 0.1 5 19 668 682 665 690 0.77 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF624-201 - 865 1.3e-08 34.5 81.6 15 19 0.0018 1.7 8.4 0.1 5 23 696 714 693 717 0.84 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF624-201 - 865 1.3e-08 34.5 81.6 16 19 0.13 1.3e+02 2.4 0.0 5 15 724 734 721 745 0.86 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF624-201 - 865 1.3e-08 34.5 81.6 17 19 8 8e+03 -3.3 0.4 6 14 753 761 752 761 0.76 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF624-201 - 865 1.3e-08 34.5 81.6 18 19 0.33 3.3e+02 1.2 0.0 5 14 808 817 806 829 0.86 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF624-201 - 865 1.3e-08 34.5 81.6 19 19 0.00022 0.22 11.3 0.2 5 26 836 857 833 858 0.93 zinc-finger C2H2-type # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF624-201.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF624-201.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF624-201.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF624-201.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF624-201.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:11:16 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF624-202.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF624-202.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF624-202.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF624-202.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF624-202.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:11:17 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZNF624-203 - 739 2.3e-161 517.8 157.2 1 22 0.00034 0.34 11.4 3.5 11 24 146 159 141 161 0.90 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF624-203 - 739 2.3e-161 517.8 157.2 2 22 1.1e-10 1.1e-07 31.9 1.1 3 25 166 188 165 189 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF624-203 - 739 2.3e-161 517.8 157.2 3 22 6e-11 5.9e-08 32.8 0.9 2 24 193 215 192 216 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF624-203 - 739 2.3e-161 517.8 157.2 4 22 6e-11 6e-08 32.8 0.3 1 25 220 244 220 245 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF624-203 - 739 2.3e-161 517.8 157.2 5 22 1.1e-10 1.1e-07 31.9 0.1 2 25 249 272 248 273 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF624-203 - 739 2.3e-161 517.8 157.2 6 22 7.3e-10 7.3e-07 29.3 0.6 2 26 277 301 276 301 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF624-203 - 739 2.3e-161 517.8 157.2 7 22 2e-10 2e-07 31.1 1.9 2 26 305 329 304 329 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF624-203 - 739 2.3e-161 517.8 157.2 8 22 2.1e-09 2.1e-06 27.9 0.6 3 25 334 356 333 357 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF624-203 - 739 2.3e-161 517.8 157.2 9 22 8.4e-12 8.4e-09 35.5 0.2 2 25 361 384 360 385 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF624-203 - 739 2.3e-161 517.8 157.2 10 22 3.6e-11 3.6e-08 33.5 0.6 1 25 388 412 388 413 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF624-203 - 739 2.3e-161 517.8 157.2 11 22 4.4e-09 4.4e-06 26.9 2.6 2 24 417 439 417 439 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF624-203 - 739 2.3e-161 517.8 157.2 12 22 6e-07 0.00059 20.1 0.1 5 24 448 467 444 468 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF624-203 - 739 2.3e-161 517.8 157.2 13 22 7.4e-10 7.3e-07 29.3 1.9 1 26 472 497 472 497 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF624-203 - 739 2.3e-161 517.8 157.2 14 22 4.3e-10 4.3e-07 30.1 1.5 1 25 500 524 500 525 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF624-203 - 739 2.3e-161 517.8 157.2 15 22 6.9e-11 6.9e-08 32.6 1.0 4 26 531 553 528 553 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF624-203 - 739 2.3e-161 517.8 157.2 16 22 6.9e-11 6.9e-08 32.6 0.9 2 26 557 581 556 581 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF624-203 - 739 2.3e-161 517.8 157.2 17 22 8e-11 8e-08 32.4 0.8 2 25 585 608 584 609 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF624-203 - 739 2.3e-161 517.8 157.2 18 22 1.3e-09 1.3e-06 28.5 1.7 3 25 614 636 612 637 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF624-203 - 739 2.3e-161 517.8 157.2 19 22 3.1e-08 3.1e-05 24.2 1.6 2 23 641 662 640 665 0.89 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF624-203 - 739 2.3e-161 517.8 157.2 20 22 6.4e-11 6.4e-08 32.7 0.4 2 25 669 692 668 693 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF624-203 - 739 2.3e-161 517.8 157.2 21 22 8.9e-11 8.8e-08 32.2 0.8 2 25 697 720 696 721 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF624-203 - 739 2.3e-161 517.8 157.2 22 22 1.5 1.5e+03 -0.1 0.1 2 13 725 736 724 738 0.83 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZNF624-203 - 739 6.2e-127 407.5 158.8 1 21 1.6e-06 0.0016 18.8 3.7 1 23 150 172 150 172 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF624-203 - 739 6.2e-127 407.5 158.8 2 21 2.6e-08 2.6e-05 24.4 0.8 1 23 178 200 178 200 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF624-203 - 739 6.2e-127 407.5 158.8 3 21 4.4e-09 4.4e-06 26.9 0.1 1 23 206 228 206 228 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF624-203 - 739 6.2e-127 407.5 158.8 4 21 5.6e-07 0.00056 20.2 1.1 1 21 234 254 234 255 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF624-203 - 739 6.2e-127 407.5 158.8 5 21 4.7e-09 4.7e-06 26.8 0.6 1 23 262 284 262 284 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF624-203 - 739 6.2e-127 407.5 158.8 6 21 1.5e-09 1.5e-06 28.3 1.3 1 23 290 312 290 312 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF624-203 - 739 6.2e-127 407.5 158.8 7 21 7.8e-07 0.00078 19.8 0.9 1 23 318 340 318 340 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF624-203 - 739 6.2e-127 407.5 158.8 8 21 2.3e-09 2.3e-06 27.7 0.4 1 23 346 368 346 368 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF624-203 - 739 6.2e-127 407.5 158.8 9 21 6.9e-08 6.8e-05 23.1 0.2 1 23 374 396 374 396 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF624-203 - 739 6.2e-127 407.5 158.8 10 21 4.6e-07 0.00046 20.5 4.3 1 23 402 424 402 424 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF624-203 - 739 6.2e-127 407.5 158.8 11 21 1.3e-08 1.3e-05 25.4 0.4 1 23 430 452 430 452 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF624-203 - 739 6.2e-127 407.5 158.8 12 21 1e-07 0.0001 22.5 1.1 1 23 458 480 458 480 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF624-203 - 739 6.2e-127 407.5 158.8 13 21 6e-07 0.0006 20.1 0.8 1 23 486 508 486 508 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF624-203 - 739 6.2e-127 407.5 158.8 14 21 5.2e-10 5.2e-07 29.8 2.4 1 23 514 536 514 536 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF624-203 - 739 6.2e-127 407.5 158.8 15 21 4e-09 4e-06 27.0 1.3 1 23 542 564 542 564 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF624-203 - 739 6.2e-127 407.5 158.8 16 21 3.4e-09 3.4e-06 27.2 1.4 1 23 570 592 570 592 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF624-203 - 739 6.2e-127 407.5 158.8 17 21 6.9e-07 0.00069 19.9 1.1 1 23 598 620 598 620 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF624-203 - 739 6.2e-127 407.5 158.8 18 21 2e-08 2e-05 24.8 0.5 1 23 626 648 626 648 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF624-203 - 739 6.2e-127 407.5 158.8 19 21 3.2e-07 0.00032 21.0 1.2 1 23 654 676 654 676 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF624-203 - 739 6.2e-127 407.5 158.8 20 21 2.1e-09 2.1e-06 27.9 0.8 1 23 682 704 682 704 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF624-203 - 739 6.2e-127 407.5 158.8 21 21 6.9e-10 6.9e-07 29.4 0.7 1 23 710 732 710 732 0.99 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZNF624-203 - 739 3.8e-67 217.1 148.5 1 21 0.00068 0.68 10.9 2.8 1 23 150 172 150 173 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF624-203 - 739 3.8e-67 217.1 148.5 2 21 4.1e-06 0.004 17.9 0.7 1 23 178 200 178 201 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF624-203 - 739 3.8e-67 217.1 148.5 3 21 0.00023 0.23 12.4 0.2 1 23 206 228 206 229 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF624-203 - 739 3.8e-67 217.1 148.5 4 21 1.1e-05 0.011 16.5 0.9 1 21 234 254 234 256 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF624-203 - 739 3.8e-67 217.1 148.5 5 21 4.2e-07 0.00041 20.9 0.6 1 23 262 284 262 285 0.97 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF624-203 - 739 3.8e-67 217.1 148.5 6 21 1.8e-06 0.0018 19.0 0.9 1 23 290 312 290 313 0.97 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF624-203 - 739 3.8e-67 217.1 148.5 7 21 0.00013 0.13 13.2 0.5 1 23 318 340 318 341 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF624-203 - 739 3.8e-67 217.1 148.5 8 21 3.5e-06 0.0035 18.0 0.3 1 23 346 368 346 369 0.97 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF624-203 - 739 3.8e-67 217.1 148.5 9 21 0.00069 0.69 10.9 0.1 1 23 374 396 374 397 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF624-203 - 739 3.8e-67 217.1 148.5 10 21 0.0006 0.59 11.1 3.3 1 23 402 424 402 425 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF624-203 - 739 3.8e-67 217.1 148.5 11 21 3e-05 0.03 15.2 0.3 1 23 430 452 430 453 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF624-203 - 739 3.8e-67 217.1 148.5 12 21 0.00038 0.38 11.7 0.9 1 23 458 480 458 481 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF624-203 - 739 3.8e-67 217.1 148.5 13 21 0.00027 0.27 12.2 0.6 1 23 486 508 486 509 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF624-203 - 739 3.8e-67 217.1 148.5 14 21 2.8e-06 0.0028 18.4 1.4 1 23 514 536 514 537 0.97 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF624-203 - 739 3.8e-67 217.1 148.5 15 21 2.7e-05 0.027 15.3 0.9 1 23 542 564 542 565 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF624-203 - 739 3.8e-67 217.1 148.5 16 21 7.3e-07 0.00072 20.2 0.8 1 23 570 592 570 593 0.97 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF624-203 - 739 3.8e-67 217.1 148.5 17 21 0.0006 0.6 11.1 1.1 1 23 598 620 598 621 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF624-203 - 739 3.8e-67 217.1 148.5 18 21 4.6e-06 0.0045 17.7 0.5 1 23 626 648 626 649 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF624-203 - 739 3.8e-67 217.1 148.5 19 21 0.004 4 8.5 1.0 1 23 654 676 654 677 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF624-203 - 739 3.8e-67 217.1 148.5 20 21 2.6e-06 0.0026 18.5 0.6 1 23 682 704 682 705 0.97 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF624-203 - 739 3.8e-67 217.1 148.5 21 21 7e-06 0.007 17.1 0.7 1 23 710 732 710 733 0.96 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF624-203 - 739 8.1e-28 95.9 144.7 1 21 0.0019 1.9 8.6 3.8 2 26 150 174 150 175 0.91 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF624-203 - 739 8.1e-28 95.9 144.7 2 21 0.0003 0.3 11.2 0.8 2 12 178 188 178 201 0.85 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF624-203 - 739 8.1e-28 95.9 144.7 3 21 0.0034 3.4 7.8 0.2 2 11 206 215 206 230 0.88 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF624-203 - 739 8.1e-28 95.9 144.7 4 21 0.0011 1.1 9.3 1.3 2 12 234 244 234 254 0.85 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF624-203 - 739 8.1e-28 95.9 144.7 5 21 0.0018 1.8 8.7 1.0 2 12 262 272 262 272 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF624-203 - 739 8.1e-28 95.9 144.7 6 21 0.028 28 4.9 0.5 2 12 290 300 290 312 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF624-203 - 739 8.1e-28 95.9 144.7 7 21 0.0018 1.8 8.7 1.1 2 12 318 328 318 329 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF624-203 - 739 8.1e-28 95.9 144.7 8 21 5.5e-05 0.055 13.5 0.2 2 24 346 368 346 371 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF624-203 - 739 8.1e-28 95.9 144.7 9 21 6e-05 0.06 13.4 0.2 2 22 374 394 374 398 0.87 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF624-203 - 739 8.1e-28 95.9 144.7 10 21 0.01 10 6.3 1.7 2 11 402 411 402 424 0.91 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF624-203 - 739 8.1e-28 95.9 144.7 11 21 0.0009 0.89 9.6 0.2 2 20 430 448 430 455 0.78 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF624-203 - 739 8.1e-28 95.9 144.7 12 21 0.0091 9.1 6.4 0.4 2 12 458 468 458 468 0.91 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF624-203 - 739 8.1e-28 95.9 144.7 13 21 0.0023 2.3 8.3 0.5 2 24 486 508 486 510 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF624-203 - 739 8.1e-28 95.9 144.7 14 21 0.017 17 5.5 1.3 2 24 514 536 514 539 0.85 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF624-203 - 739 8.1e-28 95.9 144.7 15 21 0.0053 5.3 7.2 0.7 2 24 542 564 542 567 0.75 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF624-203 - 739 8.1e-28 95.9 144.7 16 21 1e-05 0.01 15.8 1.4 2 24 570 592 570 595 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF624-203 - 739 8.1e-28 95.9 144.7 17 21 0.072 72 3.5 0.6 2 12 598 608 598 621 0.86 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF624-203 - 739 8.1e-28 95.9 144.7 18 21 3.2e-05 0.032 14.2 0.3 2 24 626 648 626 651 0.89 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF624-203 - 739 8.1e-28 95.9 144.7 19 21 0.12 1.2e+02 2.8 0.7 2 9 654 661 654 662 0.91 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF624-203 - 739 8.1e-28 95.9 144.7 20 21 0.0021 2.1 8.5 0.4 2 13 682 693 682 705 0.88 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF624-203 - 739 8.1e-28 95.9 144.7 21 21 1.9e-05 0.019 15.0 1.1 2 26 710 734 710 735 0.90 C2H2-type zinc finger Zn-ribbon_8 PF09723.10 40 ZNF624-203 - 739 2e-25 88.6 112.2 1 18 0.0024 2.4 8.3 5.3 6 35 150 186 149 189 0.87 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF624-203 - 739 2e-25 88.6 112.2 2 18 0.00024 0.23 11.6 5.2 6 34 178 213 177 214 0.89 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF624-203 - 739 2e-25 88.6 112.2 3 18 1.3e-05 0.013 15.6 1.2 6 34 206 241 205 245 0.90 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF624-203 - 739 2e-25 88.6 112.2 4 18 0.00036 0.36 11.0 4.3 6 35 234 270 233 274 0.89 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF624-203 - 739 2e-25 88.6 112.2 5 18 0.00017 0.17 12.0 4.4 6 37 262 300 261 302 0.87 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF624-203 - 739 2e-25 88.6 112.2 6 18 1.3e-05 0.013 15.6 4.2 6 35 290 326 288 330 0.88 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF624-203 - 739 2e-25 88.6 112.2 7 18 8.1e-06 0.0081 16.3 2.2 6 36 318 355 317 357 0.92 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF624-203 - 739 2e-25 88.6 112.2 8 18 2.7e-05 0.027 14.6 4.5 6 34 374 409 373 412 0.88 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF624-203 - 739 2e-25 88.6 112.2 9 18 6.9e-05 0.069 13.3 4.4 6 36 402 439 401 443 0.91 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF624-203 - 739 2e-25 88.6 112.2 10 18 4.3e-06 0.0043 17.1 1.6 6 35 430 466 429 470 0.90 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF624-203 - 739 2e-25 88.6 112.2 11 18 0.00047 0.47 10.6 3.7 6 35 486 522 484 524 0.75 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF624-203 - 739 2e-25 88.6 112.2 12 18 0.0012 1.2 9.3 4.3 6 34 514 549 512 553 0.91 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF624-203 - 739 2e-25 88.6 112.2 13 18 0.00087 0.87 9.8 5.4 6 34 542 577 541 581 0.91 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF624-203 - 739 2e-25 88.6 112.2 14 18 0.0016 1.6 8.9 0.3 6 17 570 581 569 593 0.82 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF624-203 - 739 2e-25 88.6 112.2 15 18 3.1e-06 0.0031 17.6 1.7 6 38 598 637 597 638 0.87 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF624-203 - 739 2e-25 88.6 112.2 16 18 0.0016 1.6 8.9 3.4 6 34 626 661 625 665 0.83 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF624-203 - 739 2e-25 88.6 112.2 17 18 3.9e-05 0.039 14.1 4.1 6 36 682 719 681 721 0.86 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF624-203 - 739 2e-25 88.6 112.2 18 18 0.0041 4.1 7.6 0.2 6 16 710 720 709 735 0.75 Zinc ribbon domain zf-C2H2_jaz PF12171.8 27 ZNF624-203 - 739 1.9e-18 66.3 103.8 1 20 0.018 17 5.8 1.3 2 24 150 172 149 174 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF624-203 - 739 1.9e-18 66.3 103.8 2 20 0.0059 5.9 7.3 0.2 2 22 178 198 177 198 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF624-203 - 739 1.9e-18 66.3 103.8 3 20 0.031 31 5.0 0.0 2 22 206 226 205 226 0.91 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF624-203 - 739 1.9e-18 66.3 103.8 4 20 1.5 1.5e+03 -0.3 0.6 4 12 236 244 233 254 0.82 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF624-203 - 739 1.9e-18 66.3 103.8 5 20 0.0045 4.5 7.7 0.7 2 24 262 284 261 285 0.91 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF624-203 - 739 1.9e-18 66.3 103.8 6 20 0.0064 6.4 7.2 0.9 2 24 290 312 289 312 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF624-203 - 739 1.9e-18 66.3 103.8 7 20 0.028 27 5.2 0.4 4 21 320 337 317 338 0.86 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF624-203 - 739 1.9e-18 66.3 103.8 8 20 0.0009 0.89 9.9 0.1 2 24 346 368 345 368 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF624-203 - 739 1.9e-18 66.3 103.8 9 20 0.0027 2.7 8.4 0.2 2 22 374 394 373 394 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF624-203 - 739 1.9e-18 66.3 103.8 10 20 0.29 2.9e+02 1.9 0.4 2 13 402 413 401 413 0.91 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF624-203 - 739 1.9e-18 66.3 103.8 11 20 0.12 1.2e+02 3.1 0.0 2 21 430 449 429 450 0.82 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF624-203 - 739 1.9e-18 66.3 103.8 12 20 0.0058 5.8 7.3 0.4 2 22 486 506 485 506 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF624-203 - 739 1.9e-18 66.3 103.8 13 20 0.0058 5.8 7.3 0.6 2 24 514 536 513 536 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF624-203 - 739 1.9e-18 66.3 103.8 14 20 0.0019 1.9 8.9 0.3 2 22 542 562 541 562 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF624-203 - 739 1.9e-18 66.3 103.8 15 20 0.00072 0.72 10.2 0.5 2 24 570 592 569 592 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF624-203 - 739 1.9e-18 66.3 103.8 16 20 1.6 1.6e+03 -0.4 0.4 2 14 598 610 597 618 0.74 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF624-203 - 739 1.9e-18 66.3 103.8 17 20 0.014 14 6.1 0.0 2 24 626 648 625 648 0.91 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF624-203 - 739 1.9e-18 66.3 103.8 18 20 0.0015 1.5 9.2 0.0 2 22 654 674 653 674 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF624-203 - 739 1.9e-18 66.3 103.8 19 20 0.00012 0.12 12.7 0.0 2 22 682 702 681 702 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF624-203 - 739 1.9e-18 66.3 103.8 20 20 0.001 1 9.7 0.0 2 22 710 730 709 730 0.93 Zinc-finger double-stranded RNA-binding C1_1 PF00130.22 53 ZNF624-203 - 739 7.3e-13 48.2 86.6 1 14 0.058 58 3.7 0.4 29 39 150 160 142 164 0.70 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF624-203 - 739 7.3e-13 48.2 86.6 2 14 0.07 70 3.4 7.4 9 36 175 213 167 248 0.59 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF624-203 - 739 7.3e-13 48.2 86.6 3 14 0.0017 1.7 8.6 2.6 2 37 225 270 224 274 0.83 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF624-203 - 739 7.3e-13 48.2 86.6 4 14 0.00067 0.67 9.9 0.4 9 38 259 299 251 302 0.82 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF624-203 - 739 7.3e-13 48.2 86.6 5 14 0.00046 0.46 10.4 0.5 6 37 284 326 280 330 0.85 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF624-203 - 739 7.3e-13 48.2 86.6 6 14 0.0056 5.6 6.9 3.1 5 37 312 354 307 382 0.85 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF624-203 - 739 7.3e-13 48.2 86.6 7 14 0.0051 5.1 7.1 1.8 4 37 366 410 364 418 0.80 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF624-203 - 739 7.3e-13 48.2 86.6 8 14 0.003 2.9 7.8 3.3 5 36 396 437 388 442 0.84 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF624-203 - 739 7.3e-13 48.2 86.6 9 14 0.0012 1.2 9.1 1.9 4 37 451 494 448 500 0.84 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF624-203 - 739 7.3e-13 48.2 86.6 10 14 0.0029 2.9 7.8 0.8 9 37 511 550 503 554 0.83 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF624-203 - 739 7.3e-13 48.2 86.6 11 14 0.00076 0.76 9.7 0.7 6 37 537 578 531 579 0.82 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF624-203 - 739 7.3e-13 48.2 86.6 12 14 0.00039 0.39 10.6 0.9 4 37 563 606 559 612 0.83 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF624-203 - 739 7.3e-13 48.2 86.6 13 14 0.068 68 3.5 0.1 9 21 623 635 615 642 0.75 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF624-203 - 739 7.3e-13 48.2 86.6 14 14 0.00088 0.88 9.5 5.2 2 36 644 689 644 732 0.91 Phorbol esters/diacylglycerol binding domain (C1 domain) XPA_N PF01286.18 32 ZNF624-203 - 739 1.6e-12 47.3 92.4 1 21 0.23 2.3e+02 1.9 0.1 3 12 151 160 149 168 0.83 XPA protein N-terminal XPA_N PF01286.18 32 ZNF624-203 - 739 1.6e-12 47.3 92.4 2 21 0.0014 1.4 9.0 0.2 3 19 179 196 177 196 0.84 XPA protein N-terminal XPA_N PF01286.18 32 ZNF624-203 - 739 1.6e-12 47.3 92.4 3 21 0.0064 6.4 6.9 0.1 3 14 207 218 205 222 0.88 XPA protein N-terminal XPA_N PF01286.18 32 ZNF624-203 - 739 1.6e-12 47.3 92.4 4 21 1.3 1.3e+03 -0.4 0.8 3 12 235 244 233 246 0.76 XPA protein N-terminal XPA_N PF01286.18 32 ZNF624-203 - 739 1.6e-12 47.3 92.4 5 21 0.0033 3.3 7.8 0.2 3 13 263 273 261 280 0.82 XPA protein N-terminal XPA_N PF01286.18 32 ZNF624-203 - 739 1.6e-12 47.3 92.4 6 21 0.0023 2.3 8.3 0.1 3 17 291 306 289 308 0.79 XPA protein N-terminal XPA_N PF01286.18 32 ZNF624-203 - 739 1.6e-12 47.3 92.4 7 21 0.011 11 6.2 0.1 3 14 319 330 317 336 0.83 XPA protein N-terminal XPA_N PF01286.18 32 ZNF624-203 - 739 1.6e-12 47.3 92.4 8 21 0.43 4.2e+02 1.1 0.1 3 10 347 354 346 357 0.87 XPA protein N-terminal XPA_N PF01286.18 32 ZNF624-203 - 739 1.6e-12 47.3 92.4 9 21 0.026 26 5.0 0.2 3 11 375 383 373 385 0.88 XPA protein N-terminal XPA_N PF01286.18 32 ZNF624-203 - 739 1.6e-12 47.3 92.4 10 21 0.017 17 5.6 0.1 3 12 403 412 401 414 0.88 XPA protein N-terminal XPA_N PF01286.18 32 ZNF624-203 - 739 1.6e-12 47.3 92.4 11 21 0.0016 1.6 8.8 0.1 3 14 431 442 429 443 0.91 XPA protein N-terminal XPA_N PF01286.18 32 ZNF624-203 - 739 1.6e-12 47.3 92.4 12 21 0.29 2.9e+02 1.6 0.2 4 11 460 467 458 471 0.90 XPA protein N-terminal XPA_N PF01286.18 32 ZNF624-203 - 739 1.6e-12 47.3 92.4 13 21 0.39 3.9e+02 1.2 0.2 3 12 487 496 485 497 0.88 XPA protein N-terminal XPA_N PF01286.18 32 ZNF624-203 - 739 1.6e-12 47.3 92.4 14 21 0.028 28 4.9 0.1 3 16 515 529 513 532 0.79 XPA protein N-terminal XPA_N PF01286.18 32 ZNF624-203 - 739 1.6e-12 47.3 92.4 15 21 0.014 14 5.8 0.2 3 13 543 553 541 558 0.85 XPA protein N-terminal XPA_N PF01286.18 32 ZNF624-203 - 739 1.6e-12 47.3 92.4 16 21 0.059 58 3.8 0.1 3 12 571 580 569 582 0.87 XPA protein N-terminal XPA_N PF01286.18 32 ZNF624-203 - 739 1.6e-12 47.3 92.4 17 21 0.072 71 3.6 0.5 3 12 599 608 597 609 0.89 XPA protein N-terminal XPA_N PF01286.18 32 ZNF624-203 - 739 1.6e-12 47.3 92.4 18 21 0.034 34 4.6 0.0 3 16 627 641 625 646 0.77 XPA protein N-terminal XPA_N PF01286.18 32 ZNF624-203 - 739 1.6e-12 47.3 92.4 19 21 0.28 2.8e+02 1.7 0.7 3 9 655 661 653 666 0.88 XPA protein N-terminal XPA_N PF01286.18 32 ZNF624-203 - 739 1.6e-12 47.3 92.4 20 21 0.0055 5.5 7.1 0.2 3 12 683 692 681 694 0.88 XPA protein N-terminal XPA_N PF01286.18 32 ZNF624-203 - 739 1.6e-12 47.3 92.4 21 21 0.0048 4.8 7.3 0.2 3 14 711 722 709 726 0.90 XPA protein N-terminal zf-C2H2_11 PF16622.5 29 ZNF624-203 - 739 1.5e-10 40.7 79.8 1 20 0.0069 6.9 6.5 0.1 6 26 179 199 176 200 0.89 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF624-203 - 739 1.5e-10 40.7 79.8 2 20 0.0049 4.9 7.0 0.1 5 26 206 227 203 230 0.90 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF624-203 - 739 1.5e-10 40.7 79.8 3 20 0.0038 3.8 7.4 1.0 5 26 234 255 231 256 0.93 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF624-203 - 739 1.5e-10 40.7 79.8 4 20 0.0014 1.4 8.7 0.1 5 23 262 280 259 282 0.93 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF624-203 - 739 1.5e-10 40.7 79.8 5 20 0.53 5.3e+02 0.5 0.1 5 14 290 299 287 309 0.78 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF624-203 - 739 1.5e-10 40.7 79.8 6 20 0.034 34 4.3 0.0 5 14 318 327 314 339 0.82 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF624-203 - 739 1.5e-10 40.7 79.8 7 20 0.0015 1.5 8.6 0.0 5 24 346 365 343 367 0.89 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF624-203 - 739 1.5e-10 40.7 79.8 8 20 1.1 1.1e+03 -0.5 0.0 6 14 375 383 373 393 0.88 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF624-203 - 739 1.5e-10 40.7 79.8 9 20 0.23 2.3e+02 1.7 0.3 5 14 402 411 399 423 0.81 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF624-203 - 739 1.5e-10 40.7 79.8 10 20 0.0087 8.7 6.2 0.3 5 26 430 451 427 452 0.86 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF624-203 - 739 1.5e-10 40.7 79.8 11 20 0.4 4e+02 0.9 0.3 7 26 460 479 457 480 0.85 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF624-203 - 739 1.5e-10 40.7 79.8 12 20 0.0021 2.1 8.2 0.0 5 26 486 507 483 508 0.91 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF624-203 - 739 1.5e-10 40.7 79.8 13 20 0.44 4.4e+02 0.8 0.2 5 14 514 523 513 529 0.87 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF624-203 - 739 1.5e-10 40.7 79.8 14 20 0.37 3.7e+02 1.0 0.1 5 19 542 556 539 564 0.77 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF624-203 - 739 1.5e-10 40.7 79.8 15 20 0.0015 1.5 8.7 0.1 5 23 570 588 567 591 0.84 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF624-203 - 739 1.5e-10 40.7 79.8 16 20 0.11 1.1e+02 2.7 0.0 5 15 598 608 595 619 0.86 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF624-203 - 739 1.5e-10 40.7 79.8 17 20 5.2 5.2e+03 -2.7 0.2 5 14 626 635 625 635 0.78 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF624-203 - 739 1.5e-10 40.7 79.8 18 20 6.4 6.4e+03 -3.0 1.0 7 11 656 660 654 670 0.87 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF624-203 - 739 1.5e-10 40.7 79.8 19 20 0.28 2.8e+02 1.4 0.0 5 14 682 691 680 703 0.86 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF624-203 - 739 1.5e-10 40.7 79.8 20 20 0.00018 0.18 11.6 0.2 5 26 710 731 707 732 0.93 zinc-finger C2H2-type zf-C2HE PF16278.5 64 ZNF624-203 - 739 2e-07 31.4 127.5 1 18 0.14 1.4e+02 3.0 1.3 29 47 141 159 121 168 0.77 C2HE / C2H2 / C2HC zinc-binding finger zf-C2HE PF16278.5 64 ZNF624-203 - 739 2e-07 31.4 127.5 2 18 0.01 10 6.6 1.4 27 48 168 188 160 201 0.78 C2HE / C2H2 / C2HC zinc-binding finger zf-C2HE PF16278.5 64 ZNF624-203 - 739 2e-07 31.4 127.5 3 18 0.035 34 5.0 0.3 34 48 202 216 189 222 0.79 C2HE / C2H2 / C2HC zinc-binding finger zf-C2HE PF16278.5 64 ZNF624-203 - 739 2e-07 31.4 127.5 4 18 0.0069 6.9 7.2 1.1 32 57 229 252 217 255 0.81 C2HE / C2H2 / C2HC zinc-binding finger zf-C2HE PF16278.5 64 ZNF624-203 - 739 2e-07 31.4 127.5 5 18 0.1 1e+02 3.5 1.6 34 60 258 283 247 285 0.68 C2HE / C2H2 / C2HC zinc-binding finger zf-C2HE PF16278.5 64 ZNF624-203 - 739 2e-07 31.4 127.5 6 18 0.14 1.4e+02 3.0 0.9 23 50 276 302 272 303 0.76 C2HE / C2H2 / C2HC zinc-binding finger zf-C2HE PF16278.5 64 ZNF624-203 - 739 2e-07 31.4 127.5 7 18 0.004 4 8.0 1.5 27 50 308 330 302 331 0.78 C2HE / C2H2 / C2HC zinc-binding finger zf-C2HE PF16278.5 64 ZNF624-203 - 739 2e-07 31.4 127.5 8 18 0.0062 6.2 7.4 0.1 35 61 343 368 335 371 0.87 C2HE / C2H2 / C2HC zinc-binding finger zf-C2HE PF16278.5 64 ZNF624-203 - 739 2e-07 31.4 127.5 9 18 0.0044 4.4 7.8 0.1 36 57 372 392 369 399 0.88 C2HE / C2H2 / C2HC zinc-binding finger zf-C2HE PF16278.5 64 ZNF624-203 - 739 2e-07 31.4 127.5 10 18 0.035 34 5.0 0.3 35 49 399 413 393 414 0.88 C2HE / C2H2 / C2HC zinc-binding finger zf-C2HE PF16278.5 64 ZNF624-203 - 739 2e-07 31.4 127.5 11 18 0.026 26 5.3 0.3 35 49 427 441 414 444 0.85 C2HE / C2H2 / C2HC zinc-binding finger zf-C2HE PF16278.5 64 ZNF624-203 - 739 2e-07 31.4 127.5 12 18 0.00017 0.17 12.3 6.1 35 61 483 508 447 510 0.84 C2HE / C2H2 / C2HC zinc-binding finger zf-C2HE PF16278.5 64 ZNF624-203 - 739 2e-07 31.4 127.5 13 18 0.49 4.9e+02 1.3 0.2 36 48 512 524 511 527 0.84 C2HE / C2H2 / C2HC zinc-binding finger zf-C2HE PF16278.5 64 ZNF624-203 - 739 2e-07 31.4 127.5 14 18 0.018 18 5.9 1.0 35 57 539 560 531 567 0.75 C2HE / C2H2 / C2HC zinc-binding finger zf-C2HE PF16278.5 64 ZNF624-203 - 739 2e-07 31.4 127.5 15 18 0.016 16 6.1 7.3 32 61 593 620 555 623 0.83 C2HE / C2H2 / C2HC zinc-binding finger zf-C2HE PF16278.5 64 ZNF624-203 - 739 2e-07 31.4 127.5 16 18 1.4 1.4e+03 -0.2 3.5 35 57 651 672 621 679 0.81 C2HE / C2H2 / C2HC zinc-binding finger zf-C2HE PF16278.5 64 ZNF624-203 - 739 2e-07 31.4 127.5 17 18 0.12 1.2e+02 3.2 0.2 36 61 680 704 677 707 0.83 C2HE / C2H2 / C2HC zinc-binding finger zf-C2HE PF16278.5 64 ZNF624-203 - 739 2e-07 31.4 127.5 18 18 0.067 67 4.0 0.6 36 49 708 720 704 732 0.78 C2HE / C2H2 / C2HC zinc-binding finger zf_UBZ PF18439.1 32 ZNF624-203 - 739 3.7e-07 29.6 94.8 1 21 0.27 2.7e+02 1.3 0.2 3 12 150 159 148 169 0.82 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF624-203 - 739 3.7e-07 29.6 94.8 2 21 0.005 5 6.8 0.2 3 16 178 191 176 197 0.80 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF624-203 - 739 3.7e-07 29.6 94.8 3 21 0.02 20 4.9 0.1 3 16 206 220 204 225 0.77 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF624-203 - 739 3.7e-07 29.6 94.8 4 21 0.12 1.2e+02 2.4 0.6 3 20 234 252 232 253 0.77 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF624-203 - 739 3.7e-07 29.6 94.8 5 21 0.0012 1.2 8.8 0.1 3 20 262 280 260 281 0.81 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF624-203 - 739 3.7e-07 29.6 94.8 6 21 0.02 20 4.9 0.2 3 12 290 299 288 303 0.88 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF624-203 - 739 3.7e-07 29.6 94.8 7 21 0.013 13 5.5 0.1 3 13 318 328 316 336 0.87 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF624-203 - 739 3.7e-07 29.6 94.8 8 21 0.3 3e+02 1.1 0.1 3 11 346 354 344 360 0.84 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF624-203 - 739 3.7e-07 29.6 94.8 9 21 0.0089 8.8 6.0 0.1 3 21 374 393 372 393 0.89 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF624-203 - 739 3.7e-07 29.6 94.8 10 21 0.085 85 2.9 0.2 3 12 402 411 400 413 0.87 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF624-203 - 739 3.7e-07 29.6 94.8 11 21 0.038 38 4.0 0.1 3 12 430 439 428 446 0.86 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF624-203 - 739 3.7e-07 29.6 94.8 12 21 0.035 35 4.1 0.1 3 13 458 468 456 476 0.85 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF624-203 - 739 3.7e-07 29.6 94.8 13 21 0.21 2.1e+02 1.6 0.2 3 21 486 505 484 505 0.84 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF624-203 - 739 3.7e-07 29.6 94.8 14 21 0.12 1.2e+02 2.4 0.2 3 12 514 523 512 528 0.87 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF624-203 - 739 3.7e-07 29.6 94.8 15 21 0.13 1.3e+02 2.3 0.2 3 18 542 558 540 561 0.77 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF624-203 - 739 3.7e-07 29.6 94.8 16 21 0.0081 8 6.1 0.1 3 20 570 588 568 589 0.82 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF624-203 - 739 3.7e-07 29.6 94.8 17 21 0.0091 9 6.0 0.3 3 21 598 617 596 617 0.90 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF624-203 - 739 3.7e-07 29.6 94.8 18 21 0.3 3e+02 1.1 0.2 3 12 626 635 624 637 0.87 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF624-203 - 739 3.7e-07 29.6 94.8 19 21 0.033 33 4.2 0.5 3 10 654 661 652 673 0.83 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF624-203 - 739 3.7e-07 29.6 94.8 20 21 0.0047 4.7 6.9 0.1 3 17 682 697 680 701 0.78 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF624-203 - 739 3.7e-07 29.6 94.8 21 21 0.018 17 5.1 0.1 3 17 710 725 708 729 0.78 Ubiquitin-Binding Zinc Finger zinc_ribbon_15 PF17032.5 86 ZNF624-203 - 739 4.2e-07 30.6 97.7 1 14 0.0022 2.2 9.1 4.3 32 76 144 188 121 193 0.88 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF624-203 - 739 4.2e-07 30.6 97.7 2 14 0.018 18 6.2 3.1 31 76 199 244 192 249 0.85 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF624-203 - 739 4.2e-07 30.6 97.7 3 14 0.00014 0.14 13.0 2.9 31 78 255 302 250 305 0.87 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF624-203 - 739 4.2e-07 30.6 97.7 4 14 0.0024 2.4 9.0 4.2 34 79 286 331 280 336 0.84 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF624-203 - 739 4.2e-07 30.6 97.7 5 14 0.03 30 5.4 3.8 32 78 312 358 301 361 0.79 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF624-203 - 739 4.2e-07 30.6 97.7 6 14 0.0013 1.3 9.9 6.2 17 81 326 389 319 392 0.79 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF624-203 - 739 4.2e-07 30.6 97.7 7 14 0.0045 4.5 8.1 2.1 29 74 365 410 359 420 0.84 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF624-203 - 739 4.2e-07 30.6 97.7 8 14 0.067 67 4.3 2.4 31 75 395 439 389 445 0.81 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF624-203 - 739 4.2e-07 30.6 97.7 9 14 0.13 1.3e+02 3.4 6.2 30 75 422 467 403 474 0.80 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF624-203 - 739 4.2e-07 30.6 97.7 10 14 0.59 5.9e+02 1.3 8.0 38 77 486 525 472 556 0.58 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF624-203 - 739 4.2e-07 30.6 97.7 11 14 0.00044 0.44 11.3 3.5 30 81 534 585 524 588 0.85 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF624-203 - 739 4.2e-07 30.6 97.7 12 14 0.12 1.2e+02 3.6 5.6 38 75 598 635 589 669 0.63 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF624-203 - 739 4.2e-07 30.6 97.7 13 14 0.017 17 6.3 1.8 29 81 645 697 639 700 0.78 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF624-203 - 739 4.2e-07 30.6 97.7 14 14 0.001 1 10.1 1.2 33 78 677 722 672 725 0.87 zinc-ribbon family # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF624-203.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF624-203.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF624-203.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF624-203.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF624-203.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:11:17 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF624-204.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF624-204.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF624-204.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF624-204.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF624-204.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:11:18 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF624-205.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF624-205.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF624-205.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF624-205.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF624-205.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:11:18 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- KRAB PF01352.27 42 ZNF626-201 - 92 5.7e-24 83.5 0.1 1 1 4.7e-28 8.4e-24 83.0 0.1 2 42 4 44 3 44 0.97 KRAB box # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF626-201.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF626-201.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF626-201.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF626-201.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF626-201.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:11:18 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF626-202.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF626-202.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF626-202.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF626-202.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF626-202.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:11:19 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZNF626-203 - 528 1.4e-97 316.2 104.9 1 12 1.2e-06 0.001 19.4 0.7 7 26 165 184 163 184 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF626-203 - 528 1.4e-97 316.2 104.9 2 12 1.4e-09 1.2e-06 28.7 2.9 2 26 188 212 187 212 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF626-203 - 528 1.4e-97 316.2 104.9 3 12 1.7e-12 1.4e-09 37.9 4.0 1 26 215 240 215 240 0.97 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF626-203 - 528 1.4e-97 316.2 104.9 4 12 4.4e-11 3.6e-08 33.5 1.8 2 24 244 266 243 267 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF626-203 - 528 1.4e-97 316.2 104.9 5 12 6.7e-10 5.4e-07 29.7 1.3 2 25 272 295 271 296 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF626-203 - 528 1.4e-97 316.2 104.9 6 12 4.5e-11 3.7e-08 33.4 1.7 2 26 300 324 299 324 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF626-203 - 528 1.4e-97 316.2 104.9 7 12 1.2e-09 1e-06 28.9 2.6 2 26 328 352 327 352 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF626-203 - 528 1.4e-97 316.2 104.9 8 12 1.3e-11 1.1e-08 35.1 2.3 2 26 356 380 355 380 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF626-203 - 528 1.4e-97 316.2 104.9 9 12 2.4e-11 1.9e-08 34.3 1.0 1 26 383 408 383 408 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF626-203 - 528 1.4e-97 316.2 104.9 10 12 2.2e-11 1.8e-08 34.4 1.0 1 25 411 435 411 436 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF626-203 - 528 1.4e-97 316.2 104.9 11 12 7e-10 5.7e-07 29.7 4.2 2 26 440 464 440 464 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF626-203 - 528 1.4e-97 316.2 104.9 12 12 2.2e-11 1.8e-08 34.4 1.0 1 25 467 491 467 492 0.96 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZNF626-203 - 528 1e-63 208.4 89.7 1 12 5e-05 0.041 14.3 0.3 5 23 177 195 174 195 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF626-203 - 528 1e-63 208.4 89.7 2 12 8.6e-07 0.0007 19.9 4.8 1 23 201 223 201 223 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF626-203 - 528 1e-63 208.4 89.7 3 12 3.5e-08 2.9e-05 24.3 3.4 1 23 229 251 229 251 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF626-203 - 528 1e-63 208.4 89.7 4 12 8.2e-07 0.00067 20.0 0.5 1 23 257 279 257 279 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF626-203 - 528 1e-63 208.4 89.7 5 12 2.8e-08 2.3e-05 24.6 0.5 1 23 285 307 285 307 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF626-203 - 528 1e-63 208.4 89.7 6 12 5.6e-08 4.6e-05 23.6 2.0 1 23 313 335 313 335 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF626-203 - 528 1e-63 208.4 89.7 7 12 1.4e-08 1.2e-05 25.5 1.4 1 23 341 363 341 363 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF626-203 - 528 1e-63 208.4 89.7 8 12 6.4e-09 5.2e-06 26.6 0.5 1 23 369 391 369 391 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF626-203 - 528 1e-63 208.4 89.7 9 12 7.2e-09 5.8e-06 26.5 1.3 1 23 397 419 397 419 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF626-203 - 528 1e-63 208.4 89.7 10 12 2.8e-07 0.00023 21.5 0.5 1 23 425 447 425 447 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF626-203 - 528 1e-63 208.4 89.7 11 12 1.4e-06 0.0011 19.3 2.9 1 23 453 475 453 475 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF626-203 - 528 1e-63 208.4 89.7 12 12 7.5e-06 0.0061 16.9 0.1 1 21 481 501 481 502 0.94 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZNF626-203 - 528 5.6e-38 126.3 83.0 1 12 0.009 7.3 7.7 0.1 6 23 178 195 175 196 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF626-203 - 528 5.6e-38 126.3 83.0 2 12 0.00013 0.11 13.4 4.2 1 23 201 223 201 224 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF626-203 - 528 5.6e-38 126.3 83.0 3 12 4.9e-05 0.04 14.8 2.5 1 23 229 251 229 252 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF626-203 - 528 5.6e-38 126.3 83.0 4 12 4.8e-06 0.0039 17.9 0.5 1 23 257 279 257 280 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF626-203 - 528 5.6e-38 126.3 83.0 5 12 2.2e-05 0.018 15.9 0.4 1 23 285 307 285 308 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF626-203 - 528 5.6e-38 126.3 83.0 6 12 4e-05 0.033 15.0 1.3 1 23 313 335 313 336 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF626-203 - 528 5.6e-38 126.3 83.0 7 12 1.5e-05 0.012 16.4 1.0 1 23 341 363 341 364 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF626-203 - 528 5.6e-38 126.3 83.0 8 12 1.1e-05 0.009 16.8 0.4 1 23 369 391 369 392 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF626-203 - 528 5.6e-38 126.3 83.0 9 12 1.2e-05 0.01 16.6 1.0 1 23 397 419 397 420 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF626-203 - 528 5.6e-38 126.3 83.0 10 12 6.7e-05 0.055 14.3 0.4 1 23 425 447 425 448 0.86 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF626-203 - 528 5.6e-38 126.3 83.0 11 12 7e-06 0.0057 17.4 2.6 1 23 453 475 453 476 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF626-203 - 528 5.6e-38 126.3 83.0 12 12 0.00049 0.4 11.6 0.1 1 21 481 501 481 502 0.83 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF626-203 - 528 4e-24 84.1 95.9 1 12 0.0057 4.7 7.3 0.6 6 24 177 195 177 197 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF626-203 - 528 4e-24 84.1 95.9 2 12 0.0055 4.5 7.4 5.0 2 24 201 223 201 226 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF626-203 - 528 4e-24 84.1 95.9 3 12 0.00021 0.17 11.9 4.0 2 24 229 251 229 254 0.95 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF626-203 - 528 4e-24 84.1 95.9 4 12 0.0034 2.7 8.1 0.4 2 13 257 268 257 279 0.87 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF626-203 - 528 4e-24 84.1 95.9 5 12 0.00011 0.087 12.9 0.5 2 24 285 307 285 310 0.92 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF626-203 - 528 4e-24 84.1 95.9 6 12 6.1e-06 0.005 16.8 1.7 2 24 313 335 313 337 0.95 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF626-203 - 528 4e-24 84.1 95.9 7 12 4.9e-05 0.04 13.9 1.7 2 24 341 363 341 366 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF626-203 - 528 4e-24 84.1 95.9 8 12 1.5e-05 0.012 15.6 0.5 2 24 369 391 369 394 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF626-203 - 528 4e-24 84.1 95.9 9 12 2e-06 0.0016 18.4 2.1 2 24 397 419 397 422 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF626-203 - 528 4e-24 84.1 95.9 10 12 0.0013 1 9.4 0.4 2 24 425 447 425 450 0.86 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF626-203 - 528 4e-24 84.1 95.9 11 12 0.00023 0.19 11.8 4.0 2 24 453 475 452 478 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF626-203 - 528 4e-24 84.1 95.9 12 12 0.0061 5 7.2 0.3 2 12 481 491 481 499 0.92 C2H2-type zinc finger XPA_N PF01286.18 32 ZNF626-203 - 528 3.7e-23 81.3 54.5 1 12 0.92 7.5e+02 0.3 0.0 6 12 177 183 176 190 0.88 XPA protein N-terminal XPA_N PF01286.18 32 ZNF626-203 - 528 3.7e-23 81.3 54.5 2 12 0.0021 1.8 8.7 1.0 3 14 202 213 200 217 0.90 XPA protein N-terminal XPA_N PF01286.18 32 ZNF626-203 - 528 3.7e-23 81.3 54.5 3 12 0.00058 0.47 10.5 0.1 3 14 230 241 228 247 0.86 XPA protein N-terminal XPA_N PF01286.18 32 ZNF626-203 - 528 3.7e-23 81.3 54.5 4 12 0.0005 0.41 10.7 0.2 3 14 258 269 256 275 0.88 XPA protein N-terminal XPA_N PF01286.18 32 ZNF626-203 - 528 3.7e-23 81.3 54.5 5 12 0.00091 0.74 9.9 0.1 3 14 286 297 284 304 0.85 XPA protein N-terminal XPA_N PF01286.18 32 ZNF626-203 - 528 3.7e-23 81.3 54.5 6 12 0.00016 0.13 12.4 0.4 3 19 314 330 312 332 0.87 XPA protein N-terminal XPA_N PF01286.18 32 ZNF626-203 - 528 3.7e-23 81.3 54.5 7 12 0.0011 0.92 9.6 0.1 3 14 342 353 340 359 0.85 XPA protein N-terminal XPA_N PF01286.18 32 ZNF626-203 - 528 3.7e-23 81.3 54.5 8 12 0.00088 0.72 10.0 0.2 3 14 370 381 368 386 0.90 XPA protein N-terminal XPA_N PF01286.18 32 ZNF626-203 - 528 3.7e-23 81.3 54.5 9 12 0.0012 1 9.5 0.1 3 14 398 409 396 415 0.87 XPA protein N-terminal XPA_N PF01286.18 32 ZNF626-203 - 528 3.7e-23 81.3 54.5 10 12 0.00021 0.17 11.9 0.1 3 18 426 441 424 444 0.85 XPA protein N-terminal XPA_N PF01286.18 32 ZNF626-203 - 528 3.7e-23 81.3 54.5 11 12 0.0038 3.1 7.9 1.2 3 14 454 465 453 471 0.85 XPA protein N-terminal XPA_N PF01286.18 32 ZNF626-203 - 528 3.7e-23 81.3 54.5 12 12 0.00021 0.17 12.0 0.1 3 19 482 498 480 500 0.85 XPA protein N-terminal KRAB PF01352.27 42 ZNF626-203 - 528 9.3e-23 79.6 0.1 1 1 2e-25 1.6e-22 78.8 0.1 2 42 4 44 3 44 0.97 KRAB box zf-C2H2_jaz PF12171.8 27 ZNF626-203 - 528 5e-18 64.9 64.6 1 13 8.4 6.9e+03 -2.5 0.2 7 12 147 152 146 152 0.85 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF626-203 - 528 5e-18 64.9 64.6 2 13 3.5 2.9e+03 -1.3 0.1 6 22 177 193 176 193 0.75 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF626-203 - 528 5e-18 64.9 64.6 3 13 0.019 16 6.0 1.8 2 22 201 221 200 221 0.89 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF626-203 - 528 5e-18 64.9 64.6 4 13 4e-05 0.032 14.5 1.0 2 22 229 249 228 251 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF626-203 - 528 5e-18 64.9 64.6 5 13 0.23 1.8e+02 2.5 0.1 2 21 257 276 256 277 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF626-203 - 528 5e-18 64.9 64.6 6 13 0.00011 0.087 13.1 0.0 2 21 285 304 284 305 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF626-203 - 528 5e-18 64.9 64.6 7 13 0.00015 0.12 12.7 0.7 2 22 313 333 312 333 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF626-203 - 528 5e-18 64.9 64.6 8 13 0.00094 0.77 10.1 0.1 2 22 341 361 340 361 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF626-203 - 528 5e-18 64.9 64.6 9 13 8.5e-05 0.069 13.5 0.1 2 21 369 388 368 389 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF626-203 - 528 5e-18 64.9 64.6 10 13 0.0012 1 9.7 0.4 2 22 397 417 396 417 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF626-203 - 528 5e-18 64.9 64.6 11 13 0.0056 4.6 7.6 0.1 2 21 425 444 424 445 0.90 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF626-203 - 528 5e-18 64.9 64.6 12 13 0.012 10 6.6 2.5 2 22 453 473 453 473 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF626-203 - 528 5e-18 64.9 64.6 13 13 0.0024 2 8.8 0.1 2 22 481 501 480 501 0.93 Zinc-finger double-stranded RNA-binding zf_UBZ PF18439.1 32 ZNF626-203 - 528 1.5e-15 56.5 56.0 1 13 0.75 6.2e+02 0.1 0.0 24 29 80 85 80 86 0.96 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF626-203 - 528 1.5e-15 56.5 56.0 2 13 3.5 2.8e+03 -2.0 0.0 7 20 177 191 177 192 0.78 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF626-203 - 528 1.5e-15 56.5 56.0 3 13 0.005 4.1 7.1 1.3 3 20 201 219 199 220 0.81 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF626-203 - 528 1.5e-15 56.5 56.0 4 13 0.00083 0.67 9.6 0.4 3 20 229 247 227 248 0.87 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF626-203 - 528 1.5e-15 56.5 56.0 5 13 0.0041 3.4 7.4 0.1 3 15 257 269 255 276 0.75 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF626-203 - 528 1.5e-15 56.5 56.0 6 13 0.002 1.6 8.3 0.1 3 20 285 303 283 304 0.83 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF626-203 - 528 1.5e-15 56.5 56.0 7 13 0.0095 7.8 6.2 0.2 3 20 313 331 311 332 0.78 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF626-203 - 528 1.5e-15 56.5 56.0 8 13 0.0032 2.6 7.7 0.1 3 20 341 359 339 360 0.78 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF626-203 - 528 1.5e-15 56.5 56.0 9 13 0.00042 0.34 10.5 0.2 3 20 369 387 367 388 0.91 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF626-203 - 528 1.5e-15 56.5 56.0 10 13 0.0031 2.6 7.7 0.1 3 20 397 415 395 416 0.79 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF626-203 - 528 1.5e-15 56.5 56.0 11 13 0.0022 1.8 8.2 0.1 3 16 425 439 423 444 0.79 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF626-203 - 528 1.5e-15 56.5 56.0 12 13 0.0012 0.94 9.1 0.7 3 20 453 471 451 472 0.87 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF626-203 - 528 1.5e-15 56.5 56.0 13 13 0.0016 1.3 8.7 0.2 3 20 481 499 479 500 0.81 Ubiquitin-Binding Zinc Finger zf-C2H2_11 PF16622.5 29 ZNF626-203 - 528 2.4e-09 36.8 41.5 1 11 0.00016 0.13 12.1 1.1 5 26 201 222 200 223 0.92 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF626-203 - 528 2.4e-09 36.8 41.5 2 11 0.12 1e+02 2.8 0.1 5 15 229 239 226 249 0.74 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF626-203 - 528 2.4e-09 36.8 41.5 3 11 6e-05 0.049 13.4 0.1 5 26 257 278 254 279 0.91 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF626-203 - 528 2.4e-09 36.8 41.5 4 11 0.041 33 4.3 0.1 5 26 285 306 282 307 0.83 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF626-203 - 528 2.4e-09 36.8 41.5 5 11 0.93 7.6e+02 0.0 0.1 5 26 313 334 311 335 0.80 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF626-203 - 528 2.4e-09 36.8 41.5 6 11 0.033 27 4.7 0.1 5 25 341 361 338 363 0.73 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF626-203 - 528 2.4e-09 36.8 41.5 7 11 0.11 90 3.0 0.0 5 18 369 382 366 391 0.72 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF626-203 - 528 2.4e-09 36.8 41.5 8 11 0.056 45 3.9 0.1 5 17 397 411 394 418 0.71 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF626-203 - 528 2.4e-09 36.8 41.5 9 11 0.0079 6.5 6.6 0.2 5 26 425 446 423 447 0.93 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF626-203 - 528 2.4e-09 36.8 41.5 10 11 0.16 1.3e+02 2.4 0.9 5 23 453 471 452 475 0.76 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF626-203 - 528 2.4e-09 36.8 41.5 11 11 0.041 34 4.3 0.0 5 26 481 502 479 503 0.83 zinc-finger C2H2-type Zn-ribbon_8 PF09723.10 40 ZNF626-203 - 528 2.7e-09 37.0 78.2 1 12 4.4 3.5e+03 -1.8 0.0 10 20 177 187 177 194 0.75 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF626-203 - 528 2.7e-09 37.0 78.2 2 12 0.00072 0.58 10.3 8.9 6 35 201 237 200 240 0.84 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF626-203 - 528 2.7e-09 37.0 78.2 3 12 0.0017 1.4 9.1 6.5 6 34 229 264 226 266 0.81 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF626-203 - 528 2.7e-09 37.0 78.2 4 12 0.00064 0.52 10.5 5.6 6 38 257 296 256 297 0.77 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF626-203 - 528 2.7e-09 37.0 78.2 5 12 0.0034 2.7 8.2 7.1 6 34 285 320 284 324 0.84 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF626-203 - 528 2.7e-09 37.0 78.2 6 12 0.0017 1.4 9.1 7.7 6 35 313 349 312 351 0.83 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF626-203 - 528 2.7e-09 37.0 78.2 7 12 0.00011 0.091 12.9 6.6 6 38 341 380 339 381 0.87 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF626-203 - 528 2.7e-09 37.0 78.2 8 12 0.00045 0.37 11.0 6.7 6 35 369 405 368 407 0.85 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF626-203 - 528 2.7e-09 37.0 78.2 9 12 0.0008 0.65 10.2 7.1 6 35 397 433 396 437 0.87 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF626-203 - 528 2.7e-09 37.0 78.2 10 12 0.0027 2.2 8.5 0.6 6 16 425 435 424 450 0.86 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF626-203 - 528 2.7e-09 37.0 78.2 11 12 0.0041 3.3 7.9 9.2 6 35 453 489 452 492 0.87 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF626-203 - 528 2.7e-09 37.0 78.2 12 12 0.0035 2.9 8.1 0.8 6 16 481 491 480 499 0.86 Zinc ribbon domain # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF626-203.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF626-203.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF626-203.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF626-203.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF626-203.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:11:19 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZNF626-204 - 540 1.2e-108 351.1 128.9 1 14 1.2e-06 0.001 19.4 0.7 7 26 165 184 163 184 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF626-204 - 540 1.2e-108 351.1 128.9 2 14 1.4e-09 1.2e-06 28.7 2.9 2 26 188 212 187 212 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF626-204 - 540 1.2e-108 351.1 128.9 3 14 1.7e-12 1.4e-09 37.9 4.0 1 26 215 240 215 240 0.97 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF626-204 - 540 1.2e-108 351.1 128.9 4 14 4.3e-11 3.7e-08 33.5 1.8 2 24 244 266 243 267 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF626-204 - 540 1.2e-108 351.1 128.9 5 14 6.6e-10 5.6e-07 29.7 1.3 2 25 272 295 271 296 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF626-204 - 540 1.2e-108 351.1 128.9 6 14 4.4e-11 3.8e-08 33.4 1.7 2 26 300 324 299 324 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF626-204 - 540 1.2e-108 351.1 128.9 7 14 1.2e-09 1e-06 28.9 2.6 2 26 328 352 327 352 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF626-204 - 540 1.2e-108 351.1 128.9 8 14 1.3e-11 1.1e-08 35.1 2.3 2 26 356 380 355 380 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF626-204 - 540 1.2e-108 351.1 128.9 9 14 2.3e-11 2e-08 34.3 1.0 1 26 383 408 383 408 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF626-204 - 540 1.2e-108 351.1 128.9 10 14 2.2e-11 1.9e-08 34.4 1.0 1 25 411 435 411 436 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF626-204 - 540 1.2e-108 351.1 128.9 11 14 1.4e-10 1.2e-07 31.9 2.2 2 26 440 464 440 464 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF626-204 - 540 1.2e-108 351.1 128.9 12 14 6.5e-10 5.6e-07 29.7 4.8 1 26 467 492 467 492 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF626-204 - 540 1.2e-108 351.1 128.9 13 14 6.6e-11 5.6e-08 32.9 4.5 1 26 495 520 495 520 0.97 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF626-204 - 540 1.2e-108 351.1 128.9 14 14 2.7e-06 0.0023 18.3 1.6 2 18 524 540 523 540 0.93 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZNF626-204 - 540 3.5e-71 231.9 108.0 1 13 4.9e-05 0.042 14.3 0.3 5 23 177 195 174 195 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF626-204 - 540 3.5e-71 231.9 108.0 2 13 8.4e-07 0.00072 19.9 4.8 1 23 201 223 201 223 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF626-204 - 540 3.5e-71 231.9 108.0 3 13 3.5e-08 3e-05 24.2 3.4 1 23 229 251 229 251 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF626-204 - 540 3.5e-71 231.9 108.0 4 13 8e-07 0.00068 19.9 0.5 1 23 257 279 257 279 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF626-204 - 540 3.5e-71 231.9 108.0 5 13 2.7e-08 2.3e-05 24.6 0.5 1 23 285 307 285 307 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF626-204 - 540 3.5e-71 231.9 108.0 6 13 5.5e-08 4.7e-05 23.6 2.0 1 23 313 335 313 335 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF626-204 - 540 3.5e-71 231.9 108.0 7 13 1.4e-08 1.2e-05 25.5 1.4 1 23 341 363 341 363 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF626-204 - 540 3.5e-71 231.9 108.0 8 13 6.2e-09 5.3e-06 26.6 0.5 1 23 369 391 369 391 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF626-204 - 540 3.5e-71 231.9 108.0 9 13 7e-09 6e-06 26.4 1.3 1 23 397 419 397 419 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF626-204 - 540 3.5e-71 231.9 108.0 10 13 2.7e-07 0.00023 21.4 0.5 1 23 425 447 425 447 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF626-204 - 540 3.5e-71 231.9 108.0 11 13 7.1e-09 6.1e-06 26.4 1.9 1 23 453 475 453 475 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF626-204 - 540 3.5e-71 231.9 108.0 12 13 1.4e-07 0.00012 22.4 3.4 1 23 481 503 481 503 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF626-204 - 540 3.5e-71 231.9 108.0 13 13 2.3e-07 0.0002 21.7 4.2 1 23 509 531 509 531 0.97 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZNF626-204 - 540 8.3e-38 125.8 98.9 1 13 0.0088 7.5 7.7 0.1 6 23 178 195 175 196 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF626-204 - 540 8.3e-38 125.8 98.9 2 13 0.00013 0.11 13.4 4.2 1 23 201 223 201 224 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF626-204 - 540 8.3e-38 125.8 98.9 3 13 4.8e-05 0.041 14.7 2.5 1 23 229 251 229 252 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF626-204 - 540 8.3e-38 125.8 98.9 4 13 4.7e-06 0.004 17.9 0.5 1 23 257 279 257 280 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF626-204 - 540 8.3e-38 125.8 98.9 5 13 2.1e-05 0.018 15.8 0.4 1 23 285 307 285 308 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF626-204 - 540 8.3e-38 125.8 98.9 6 13 4e-05 0.034 15.0 1.3 1 23 313 335 313 336 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF626-204 - 540 8.3e-38 125.8 98.9 7 13 1.5e-05 0.013 16.3 1.0 1 23 341 363 341 364 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF626-204 - 540 8.3e-38 125.8 98.9 8 13 1.1e-05 0.0092 16.7 0.4 1 23 369 391 369 392 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF626-204 - 540 8.3e-38 125.8 98.9 9 13 1.2e-05 0.01 16.6 1.0 1 23 397 419 397 420 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF626-204 - 540 8.3e-38 125.8 98.9 10 13 6.6e-05 0.056 14.3 0.4 1 23 425 447 425 448 0.86 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF626-204 - 540 8.3e-38 125.8 98.9 11 13 2.1e-05 0.018 15.8 1.5 1 23 453 475 453 476 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF626-204 - 540 8.3e-38 125.8 98.9 12 13 0.00068 0.58 11.1 2.5 1 23 481 503 481 504 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF626-204 - 540 8.3e-38 125.8 98.9 13 13 0.0004 0.35 11.8 3.3 1 23 509 531 509 532 0.95 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF626-204 - 540 1.4e-26 91.9 111.2 1 13 0.0056 4.8 7.3 0.6 6 24 177 195 177 197 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF626-204 - 540 1.4e-26 91.9 111.2 2 13 0.0054 4.6 7.3 5.0 2 24 201 223 201 226 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF626-204 - 540 1.4e-26 91.9 111.2 3 13 0.00021 0.18 11.9 4.0 2 24 229 251 229 254 0.95 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF626-204 - 540 1.4e-26 91.9 111.2 4 13 0.0033 2.8 8.0 0.4 2 13 257 268 257 279 0.87 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF626-204 - 540 1.4e-26 91.9 111.2 5 13 0.0001 0.089 12.8 0.5 2 24 285 307 285 310 0.92 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF626-204 - 540 1.4e-26 91.9 111.2 6 13 6e-06 0.0051 16.8 1.7 2 24 313 335 313 337 0.95 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF626-204 - 540 1.4e-26 91.9 111.2 7 13 4.8e-05 0.041 13.9 1.7 2 24 341 363 341 366 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF626-204 - 540 1.4e-26 91.9 111.2 8 13 1.5e-05 0.013 15.5 0.5 2 24 369 391 369 394 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF626-204 - 540 1.4e-26 91.9 111.2 9 13 2e-06 0.0017 18.3 2.1 2 24 397 419 397 422 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF626-204 - 540 1.4e-26 91.9 111.2 10 13 0.0012 1.1 9.4 0.4 2 24 425 447 425 450 0.86 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF626-204 - 540 1.4e-26 91.9 111.2 11 13 0.00026 0.22 11.5 2.0 2 24 453 475 452 478 0.92 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF626-204 - 540 1.4e-26 91.9 111.2 12 13 9.6e-06 0.0082 16.1 3.7 2 24 481 503 480 506 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF626-204 - 540 1.4e-26 91.9 111.2 13 13 0.0035 3 7.9 4.1 2 24 509 531 509 534 0.93 C2H2-type zinc finger XPA_N PF01286.18 32 ZNF626-204 - 540 1.8e-24 85.4 58.2 1 13 0.9 7.7e+02 0.3 0.0 6 12 177 183 176 190 0.88 XPA protein N-terminal XPA_N PF01286.18 32 ZNF626-204 - 540 1.8e-24 85.4 58.2 2 13 0.0021 1.8 8.7 1.0 3 14 202 213 200 217 0.90 XPA protein N-terminal XPA_N PF01286.18 32 ZNF626-204 - 540 1.8e-24 85.4 58.2 3 13 0.00056 0.48 10.5 0.1 3 14 230 241 228 247 0.86 XPA protein N-terminal XPA_N PF01286.18 32 ZNF626-204 - 540 1.8e-24 85.4 58.2 4 13 0.00049 0.42 10.7 0.2 3 14 258 269 256 275 0.88 XPA protein N-terminal XPA_N PF01286.18 32 ZNF626-204 - 540 1.8e-24 85.4 58.2 5 13 0.00089 0.76 9.9 0.1 3 14 286 297 284 304 0.85 XPA protein N-terminal XPA_N PF01286.18 32 ZNF626-204 - 540 1.8e-24 85.4 58.2 6 13 0.00015 0.13 12.3 0.4 3 19 314 330 312 332 0.87 XPA protein N-terminal XPA_N PF01286.18 32 ZNF626-204 - 540 1.8e-24 85.4 58.2 7 13 0.0011 0.95 9.6 0.1 3 14 342 353 340 359 0.85 XPA protein N-terminal XPA_N PF01286.18 32 ZNF626-204 - 540 1.8e-24 85.4 58.2 8 13 0.00086 0.73 9.9 0.2 3 14 370 381 368 386 0.90 XPA protein N-terminal XPA_N PF01286.18 32 ZNF626-204 - 540 1.8e-24 85.4 58.2 9 13 0.0012 1 9.4 0.1 3 14 398 409 396 415 0.87 XPA protein N-terminal XPA_N PF01286.18 32 ZNF626-204 - 540 1.8e-24 85.4 58.2 10 13 0.00021 0.18 11.9 0.1 3 18 426 441 424 444 0.85 XPA protein N-terminal XPA_N PF01286.18 32 ZNF626-204 - 540 1.8e-24 85.4 58.2 11 13 0.00053 0.46 10.6 0.2 3 15 454 466 453 472 0.83 XPA protein N-terminal XPA_N PF01286.18 32 ZNF626-204 - 540 1.8e-24 85.4 58.2 12 13 0.011 9.3 6.4 0.6 3 12 482 491 481 496 0.92 XPA protein N-terminal XPA_N PF01286.18 32 ZNF626-204 - 540 1.8e-24 85.4 58.2 13 13 0.00088 0.75 9.9 0.1 3 14 510 521 508 527 0.83 XPA protein N-terminal KRAB PF01352.27 42 ZNF626-204 - 540 9.7e-23 79.6 0.1 1 1 1.9e-25 1.7e-22 78.8 0.1 2 42 4 44 3 44 0.97 KRAB box zf-C2H2_jaz PF12171.8 27 ZNF626-204 - 540 1.7e-20 72.8 74.7 1 14 8.3 7e+03 -2.5 0.2 7 12 147 152 146 152 0.85 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF626-204 - 540 1.7e-20 72.8 74.7 2 14 3.4 2.9e+03 -1.3 0.1 6 22 177 193 176 193 0.75 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF626-204 - 540 1.7e-20 72.8 74.7 3 14 0.019 16 5.9 1.8 2 22 201 221 200 221 0.89 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF626-204 - 540 1.7e-20 72.8 74.7 4 14 3.9e-05 0.033 14.5 1.0 2 22 229 249 228 251 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF626-204 - 540 1.7e-20 72.8 74.7 5 14 0.22 1.9e+02 2.5 0.1 2 21 257 276 256 277 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF626-204 - 540 1.7e-20 72.8 74.7 6 14 0.0001 0.089 13.1 0.0 2 21 285 304 284 305 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF626-204 - 540 1.7e-20 72.8 74.7 7 14 0.00014 0.12 12.7 0.7 2 22 313 333 312 333 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF626-204 - 540 1.7e-20 72.8 74.7 8 14 0.00092 0.79 10.1 0.1 2 22 341 361 340 361 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF626-204 - 540 1.7e-20 72.8 74.7 9 14 8.3e-05 0.071 13.4 0.1 2 21 369 388 368 389 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF626-204 - 540 1.7e-20 72.8 74.7 10 14 0.0012 1 9.7 0.4 2 22 397 417 396 417 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF626-204 - 540 1.7e-20 72.8 74.7 11 14 0.0055 4.7 7.6 0.1 2 21 425 444 424 445 0.90 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF626-204 - 540 1.7e-20 72.8 74.7 12 14 0.00062 0.53 10.6 0.5 2 21 453 472 453 473 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF626-204 - 540 1.7e-20 72.8 74.7 13 14 0.0049 4.2 7.8 3.8 2 22 481 501 481 501 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF626-204 - 540 1.7e-20 72.8 74.7 14 14 0.00027 0.23 11.8 0.2 2 22 509 529 508 529 0.93 Zinc-finger double-stranded RNA-binding zf_UBZ PF18439.1 32 ZNF626-204 - 540 9.1e-17 60.4 62.4 1 14 0.74 6.3e+02 0.1 0.0 24 29 80 85 80 86 0.96 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF626-204 - 540 9.1e-17 60.4 62.4 2 14 3.4 2.9e+03 -2.0 0.0 7 20 177 191 177 192 0.78 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF626-204 - 540 9.1e-17 60.4 62.4 3 14 0.0049 4.2 7.0 1.3 3 20 201 219 199 220 0.81 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF626-204 - 540 9.1e-17 60.4 62.4 4 14 0.00081 0.69 9.6 0.4 3 20 229 247 227 248 0.87 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF626-204 - 540 9.1e-17 60.4 62.4 5 14 0.004 3.4 7.3 0.1 3 15 257 269 255 276 0.75 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF626-204 - 540 9.1e-17 60.4 62.4 6 14 0.002 1.7 8.3 0.1 3 20 285 303 283 304 0.83 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF626-204 - 540 9.1e-17 60.4 62.4 7 14 0.0093 8 6.2 0.2 3 20 313 331 311 332 0.78 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF626-204 - 540 9.1e-17 60.4 62.4 8 14 0.0032 2.7 7.7 0.1 3 20 341 359 339 360 0.78 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF626-204 - 540 9.1e-17 60.4 62.4 9 14 0.00041 0.35 10.5 0.2 3 20 369 387 367 388 0.91 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF626-204 - 540 9.1e-17 60.4 62.4 10 14 0.0031 2.6 7.7 0.1 3 20 397 415 395 416 0.79 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF626-204 - 540 9.1e-17 60.4 62.4 11 14 0.0022 1.9 8.2 0.1 3 16 425 439 423 444 0.79 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF626-204 - 540 9.1e-17 60.4 62.4 12 14 0.0019 1.6 8.4 0.3 3 20 453 471 451 472 0.79 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF626-204 - 540 9.1e-17 60.4 62.4 13 14 0.0044 3.8 7.2 0.4 3 20 481 499 479 500 0.83 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF626-204 - 540 9.1e-17 60.4 62.4 14 14 0.00027 0.23 11.1 0.4 3 24 509 531 507 532 0.87 Ubiquitin-Binding Zinc Finger Zn-ribbon_8 PF09723.10 40 ZNF626-204 - 540 3e-11 43.2 83.4 1 13 4.3 3.6e+03 -1.8 0.0 10 20 177 187 177 194 0.75 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF626-204 - 540 3e-11 43.2 83.4 2 13 0.00079 0.68 10.1 9.1 6 35 201 237 200 240 0.84 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF626-204 - 540 3e-11 43.2 83.4 3 13 0.0014 1.2 9.3 6.2 6 34 229 264 227 266 0.81 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF626-204 - 540 3e-11 43.2 83.4 4 13 0.00061 0.52 10.5 5.6 6 38 257 296 256 297 0.77 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF626-204 - 540 3e-11 43.2 83.4 5 13 0.0062 5.3 7.3 7.2 6 33 285 319 283 320 0.84 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF626-204 - 540 3e-11 43.2 83.4 6 13 0.0014 1.2 9.3 7.6 6 35 313 349 312 352 0.83 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF626-204 - 540 3e-11 43.2 83.4 7 13 0.0001 0.089 12.9 6.6 6 38 341 380 340 382 0.87 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF626-204 - 540 3e-11 43.2 83.4 8 13 0.0005 0.42 10.8 6.8 6 35 369 405 368 407 0.85 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF626-204 - 540 3e-11 43.2 83.4 9 13 0.0014 1.2 9.3 7.3 6 34 397 432 396 434 0.88 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF626-204 - 540 3e-11 43.2 83.4 10 13 0.00051 0.44 10.7 6.8 6 38 425 464 424 466 0.84 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF626-204 - 540 3e-11 43.2 83.4 11 13 0.0038 3.2 7.9 0.8 6 17 453 464 452 472 0.84 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF626-204 - 540 3e-11 43.2 83.4 12 13 0.0038 3.2 7.9 0.4 6 20 481 495 480 504 0.84 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF626-204 - 540 3e-11 43.2 83.4 13 13 0.0013 1.1 9.4 0.9 6 20 509 523 508 540 0.79 Zinc ribbon domain zf-C2H2_11 PF16622.5 29 ZNF626-204 - 540 5.8e-07 29.2 47.7 1 12 0.00016 0.13 12.0 1.1 5 26 201 222 200 223 0.92 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF626-204 - 540 5.8e-07 29.2 47.7 2 12 0.12 1e+02 2.8 0.1 5 15 229 239 226 249 0.74 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF626-204 - 540 5.8e-07 29.2 47.7 3 12 5.9e-05 0.051 13.4 0.1 5 26 257 278 254 279 0.91 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF626-204 - 540 5.8e-07 29.2 47.7 4 12 0.04 34 4.3 0.1 5 26 285 306 282 307 0.83 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF626-204 - 540 5.8e-07 29.2 47.7 5 12 0.91 7.8e+02 -0.0 0.1 5 26 313 334 311 335 0.80 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF626-204 - 540 5.8e-07 29.2 47.7 6 12 0.032 27 4.6 0.1 5 25 341 361 338 363 0.73 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF626-204 - 540 5.8e-07 29.2 47.7 7 12 0.11 92 2.9 0.0 5 18 369 382 366 391 0.72 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF626-204 - 540 5.8e-07 29.2 47.7 8 12 0.055 47 3.9 0.1 5 17 397 411 394 418 0.71 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF626-204 - 540 5.8e-07 29.2 47.7 9 12 0.0078 6.6 6.6 0.2 5 26 425 446 423 447 0.93 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF626-204 - 540 5.8e-07 29.2 47.7 10 12 0.14 1.2e+02 2.5 0.4 5 23 453 471 452 475 0.72 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF626-204 - 540 5.8e-07 29.2 47.7 11 12 6.7 5.7e+03 -2.8 0.2 5 11 481 487 481 490 0.77 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF626-204 - 540 5.8e-07 29.2 47.7 12 12 0.13 1.1e+02 2.6 0.2 5 14 509 518 507 529 0.78 zinc-finger C2H2-type # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF626-204.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF626-204.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF626-204.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF626-204.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF626-204.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:11:20 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZNF627-201 - 461 6.1e-80 260.4 91.0 1 12 0.00027 0.24 11.9 0.1 1 14 115 128 115 144 0.79 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF627-201 - 461 6.1e-80 260.4 91.0 2 12 1.4e-06 0.0012 19.1 0.3 1 24 147 176 147 178 0.83 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF627-201 - 461 6.1e-80 260.4 91.0 3 12 9.2e-08 8.2e-05 22.9 0.3 3 25 183 205 181 206 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF627-201 - 461 6.1e-80 260.4 91.0 4 12 1.9e-10 1.7e-07 31.4 3.2 4 25 212 233 210 234 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF627-201 - 461 6.1e-80 260.4 91.0 5 12 4.5e-10 4e-07 30.2 2.1 5 25 241 261 238 262 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF627-201 - 461 6.1e-80 260.4 91.0 6 12 2.8e-10 2.5e-07 30.8 2.8 5 25 269 289 266 290 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF627-201 - 461 6.1e-80 260.4 91.0 7 12 6.2e-09 5.6e-06 26.5 1.5 3 23 295 315 293 318 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF627-201 - 461 6.1e-80 260.4 91.0 8 12 8.2e-11 7.3e-08 32.5 0.4 2 24 322 344 321 345 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF627-201 - 461 6.1e-80 260.4 91.0 9 12 1.1e-09 9.7e-07 29.0 2.6 2 25 350 373 349 374 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF627-201 - 461 6.1e-80 260.4 91.0 10 12 1.1e-11 9.6e-09 35.3 2.9 2 25 378 401 377 402 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF627-201 - 461 6.1e-80 260.4 91.0 11 12 3.8e-11 3.4e-08 33.5 1.9 3 25 407 429 405 430 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF627-201 - 461 6.1e-80 260.4 91.0 12 12 0.00016 0.14 12.6 0.3 2 16 434 448 433 450 0.91 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZNF627-201 - 461 5.2e-41 136.9 84.5 1 11 0.00048 0.43 11.1 0.0 3 23 101 123 100 123 0.93 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF627-201 - 461 5.2e-41 136.9 84.5 2 11 1.4e-06 0.0012 19.2 0.3 1 23 167 189 167 189 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF627-201 - 461 5.2e-41 136.9 84.5 3 11 9.5e-08 8.5e-05 22.8 0.7 1 23 195 217 195 217 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF627-201 - 461 5.2e-41 136.9 84.5 4 11 8.3e-05 0.074 13.5 2.4 1 23 223 245 223 245 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF627-201 - 461 5.2e-41 136.9 84.5 5 11 0.00043 0.39 11.3 2.8 1 23 251 273 251 273 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF627-201 - 461 5.2e-41 136.9 84.5 6 11 2.8e-05 0.025 15.0 2.3 1 23 279 301 279 301 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF627-201 - 461 5.2e-41 136.9 84.5 7 11 0.00056 0.5 10.9 0.9 1 23 307 329 307 329 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF627-201 - 461 5.2e-41 136.9 84.5 8 11 9.4e-08 8.4e-05 22.8 1.0 1 23 335 357 335 357 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF627-201 - 461 5.2e-41 136.9 84.5 9 11 3e-05 0.027 14.9 3.6 1 23 363 385 363 385 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF627-201 - 461 5.2e-41 136.9 84.5 10 11 2.6e-08 2.3e-05 24.6 2.8 1 23 391 413 391 413 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF627-201 - 461 5.2e-41 136.9 84.5 11 11 2.9e-07 0.00026 21.3 1.3 1 23 419 441 419 441 0.98 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZNF627-201 - 461 2.3e-36 121.3 84.5 1 11 0.43 3.8e+02 2.4 0.0 6 23 106 123 100 124 0.76 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF627-201 - 461 2.3e-36 121.3 84.5 2 11 3.4e-06 0.0031 18.2 0.3 3 23 169 189 167 190 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF627-201 - 461 2.3e-36 121.3 84.5 3 11 1.3e-05 0.012 16.4 0.7 1 23 195 217 195 218 0.85 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF627-201 - 461 2.3e-36 121.3 84.5 4 11 6.1e-06 0.0055 17.4 2.1 1 23 223 245 223 246 0.90 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF627-201 - 461 2.3e-36 121.3 84.5 5 11 5.3e-06 0.0048 17.6 2.3 1 23 251 273 251 274 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF627-201 - 461 2.3e-36 121.3 84.5 6 11 4.9e-06 0.0044 17.7 2.4 1 23 279 301 279 302 0.97 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF627-201 - 461 2.3e-36 121.3 84.5 7 11 1.5e-05 0.013 16.2 1.2 1 23 307 329 307 330 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF627-201 - 461 2.3e-36 121.3 84.5 8 11 1.1e-05 0.0095 16.7 0.9 1 23 335 357 335 358 0.97 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF627-201 - 461 2.3e-36 121.3 84.5 9 11 9.6e-06 0.0086 16.8 3.1 3 23 365 385 363 386 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF627-201 - 461 2.3e-36 121.3 84.5 10 11 9e-06 0.0081 16.9 1.9 1 23 391 413 391 414 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF627-201 - 461 2.3e-36 121.3 84.5 11 11 6.3e-06 0.0057 17.4 1.1 1 23 419 441 419 442 0.93 C2H2-type zinc finger KRAB PF01352.27 42 ZNF627-201 - 461 3.2e-24 84.3 0.1 1 1 5.5e-27 5e-24 83.7 0.1 1 42 3 44 3 44 0.99 KRAB box zf-C2H2_6 PF13912.6 27 ZNF627-201 - 461 1.9e-13 50.0 73.4 1 10 2.6e-06 0.0023 17.9 0.1 2 25 167 190 167 192 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF627-201 - 461 1.9e-13 50.0 73.4 2 10 0.0014 1.3 9.1 0.9 2 11 195 204 195 206 0.92 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF627-201 - 461 1.9e-13 50.0 73.4 3 10 0.0012 1 9.4 0.9 2 12 223 233 223 233 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF627-201 - 461 1.9e-13 50.0 73.4 4 10 0.0056 5.1 7.2 3.2 2 12 251 261 251 263 0.95 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF627-201 - 461 1.9e-13 50.0 73.4 5 10 0.0012 1.1 9.4 2.4 2 24 279 301 279 304 0.79 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF627-201 - 461 1.9e-13 50.0 73.4 6 10 0.00093 0.83 9.7 0.9 2 24 307 329 306 331 0.87 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF627-201 - 461 1.9e-13 50.0 73.4 7 10 0.0019 1.7 8.7 0.8 2 11 335 344 335 345 0.95 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF627-201 - 461 1.9e-13 50.0 73.4 8 10 0.034 30 4.8 2.4 2 12 363 373 363 383 0.91 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF627-201 - 461 1.9e-13 50.0 73.4 9 10 0.0049 4.4 7.4 1.1 2 12 391 401 391 403 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF627-201 - 461 1.9e-13 50.0 73.4 10 10 0.00063 0.56 10.3 0.8 2 12 419 429 419 431 0.93 C2H2-type zinc finger Zn-ribbon_8 PF09723.10 40 ZNF627-201 - 461 2.7e-10 40.2 59.0 1 10 0.002 1.8 8.7 0.0 6 22 167 183 166 189 0.86 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF627-201 - 461 2.7e-10 40.2 59.0 2 10 4.7e-05 0.042 14.0 4.3 6 34 195 230 194 235 0.85 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF627-201 - 461 2.7e-10 40.2 59.0 3 10 0.00061 0.55 10.4 6.8 6 34 223 258 221 261 0.84 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF627-201 - 461 2.7e-10 40.2 59.0 4 10 0.00072 0.64 10.2 7.7 6 35 251 287 249 289 0.83 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF627-201 - 461 2.7e-10 40.2 59.0 5 10 0.013 12 6.1 8.3 6 36 279 316 278 319 0.69 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF627-201 - 461 2.7e-10 40.2 59.0 6 10 0.074 66 3.7 0.6 6 16 307 317 306 326 0.75 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF627-201 - 461 2.7e-10 40.2 59.0 7 10 5e-05 0.045 13.9 3.1 6 34 335 370 334 373 0.84 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF627-201 - 461 2.7e-10 40.2 59.0 8 10 0.00041 0.37 10.9 5.4 6 38 363 402 362 404 0.86 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF627-201 - 461 2.7e-10 40.2 59.0 9 10 3.8e-05 0.034 14.2 4.8 6 38 391 430 390 432 0.84 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF627-201 - 461 2.7e-10 40.2 59.0 10 10 0.0044 4 7.6 0.6 6 17 419 430 418 441 0.85 Zinc ribbon domain Zn_ribbon_SprT PF17283.2 38 ZNF627-201 - 461 3.1e-08 33.4 51.5 1 8 0.0043 3.9 7.5 1.1 9 35 143 177 143 192 0.90 SprT-like zinc ribbon domain Zn_ribbon_SprT PF17283.2 38 ZNF627-201 - 461 3.1e-08 33.4 51.5 2 8 8.2e-06 0.0073 16.2 1.3 5 36 195 234 194 236 0.93 SprT-like zinc ribbon domain Zn_ribbon_SprT PF17283.2 38 ZNF627-201 - 461 3.1e-08 33.4 51.5 3 8 0.028 25 4.9 2.1 10 36 234 262 233 264 0.82 SprT-like zinc ribbon domain Zn_ribbon_SprT PF17283.2 38 ZNF627-201 - 461 3.1e-08 33.4 51.5 4 8 0.02 18 5.3 2.3 10 35 262 289 260 292 0.86 SprT-like zinc ribbon domain Zn_ribbon_SprT PF17283.2 38 ZNF627-201 - 461 3.1e-08 33.4 51.5 5 8 0.49 4.4e+02 0.9 3.8 5 35 279 317 278 320 0.84 SprT-like zinc ribbon domain Zn_ribbon_SprT PF17283.2 38 ZNF627-201 - 461 3.1e-08 33.4 51.5 6 8 0.0061 5.5 7.0 1.7 7 33 309 343 306 346 0.85 SprT-like zinc ribbon domain Zn_ribbon_SprT PF17283.2 38 ZNF627-201 - 461 3.1e-08 33.4 51.5 7 8 4.7e-06 0.0042 17.0 1.1 5 36 335 374 334 376 0.93 SprT-like zinc ribbon domain Zn_ribbon_SprT PF17283.2 38 ZNF627-201 - 461 3.1e-08 33.4 51.5 8 8 8.4e-05 0.075 12.9 4.4 5 32 391 426 390 430 0.94 SprT-like zinc ribbon domain # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF627-201.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF627-201.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF627-201.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF627-201.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF627-201.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:11:20 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF627-202.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF627-202.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF627-202.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF627-202.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF627-202.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:11:21 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF627-203.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF627-203.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF627-203.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF627-203.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF627-203.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:11:21 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZNF627-204 - 351 1.6e-81 265.4 91.0 1 12 0.00021 0.17 12.3 0.1 1 14 5 18 5 34 0.79 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF627-204 - 351 1.6e-81 265.4 91.0 2 12 1.1e-06 0.00086 19.6 0.3 1 24 37 66 37 68 0.83 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF627-204 - 351 1.6e-81 265.4 91.0 3 12 7.2e-08 5.9e-05 23.3 0.3 3 25 73 95 71 96 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF627-204 - 351 1.6e-81 265.4 91.0 4 12 1.5e-10 1.2e-07 31.8 3.2 4 25 102 123 100 124 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF627-204 - 351 1.6e-81 265.4 91.0 5 12 3.5e-10 2.9e-07 30.6 2.1 5 25 131 151 128 152 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF627-204 - 351 1.6e-81 265.4 91.0 6 12 2.2e-10 1.8e-07 31.2 2.8 5 25 159 179 156 180 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF627-204 - 351 1.6e-81 265.4 91.0 7 12 4.9e-09 4e-06 27.0 1.5 3 23 185 205 183 208 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF627-204 - 351 1.6e-81 265.4 91.0 8 12 6.4e-11 5.2e-08 33.0 0.4 2 24 212 234 211 235 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF627-204 - 351 1.6e-81 265.4 91.0 9 12 8.4e-10 6.9e-07 29.4 2.6 2 25 240 263 239 264 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF627-204 - 351 1.6e-81 265.4 91.0 10 12 8.4e-12 6.9e-09 35.7 2.9 2 25 268 291 267 292 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF627-204 - 351 1.6e-81 265.4 91.0 11 12 3e-11 2.4e-08 34.0 1.9 3 25 297 319 295 320 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF627-204 - 351 1.6e-81 265.4 91.0 12 12 0.00013 0.1 13.0 0.3 2 16 324 338 323 340 0.91 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZNF627-204 - 351 1.7e-39 132.1 87.8 1 11 0.039 32 5.2 0.0 13 23 3 13 2 13 0.92 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF627-204 - 351 1.7e-39 132.1 87.8 2 11 1.1e-06 0.00087 19.6 0.3 1 23 57 79 57 79 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF627-204 - 351 1.7e-39 132.1 87.8 3 11 7.5e-08 6.1e-05 23.3 0.7 1 23 85 107 85 107 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF627-204 - 351 1.7e-39 132.1 87.8 4 11 6.5e-05 0.053 14.0 2.4 1 23 113 135 113 135 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF627-204 - 351 1.7e-39 132.1 87.8 5 11 0.00034 0.28 11.7 2.8 1 23 141 163 141 163 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF627-204 - 351 1.7e-39 132.1 87.8 6 11 2.2e-05 0.018 15.5 2.3 1 23 169 191 169 191 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF627-204 - 351 1.7e-39 132.1 87.8 7 11 0.00044 0.36 11.4 0.9 1 23 197 219 197 219 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF627-204 - 351 1.7e-39 132.1 87.8 8 11 7.4e-08 6e-05 23.3 1.0 1 23 225 247 225 247 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF627-204 - 351 1.7e-39 132.1 87.8 9 11 2.4e-05 0.019 15.4 3.6 1 23 253 275 253 275 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF627-204 - 351 1.7e-39 132.1 87.8 10 11 2e-08 1.7e-05 25.0 2.8 1 23 281 303 281 303 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF627-204 - 351 1.7e-39 132.1 87.8 11 11 2.3e-07 0.00018 21.7 1.3 1 23 309 331 309 331 0.98 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZNF627-204 - 351 3.2e-37 124.0 85.3 1 11 1.1 9e+02 1.2 0.0 14 23 4 13 2 14 0.85 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF627-204 - 351 3.2e-37 124.0 85.3 2 11 2.7e-06 0.0022 18.7 0.3 3 23 59 79 57 80 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF627-204 - 351 3.2e-37 124.0 85.3 3 11 1.1e-05 0.0086 16.8 0.7 1 23 85 107 85 108 0.85 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF627-204 - 351 3.2e-37 124.0 85.3 4 11 4.8e-06 0.0039 17.9 2.1 1 23 113 135 113 136 0.90 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF627-204 - 351 3.2e-37 124.0 85.3 5 11 4.1e-06 0.0034 18.1 2.3 1 23 141 163 141 164 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF627-204 - 351 3.2e-37 124.0 85.3 6 11 3.9e-06 0.0032 18.2 2.4 1 23 169 191 169 192 0.97 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF627-204 - 351 3.2e-37 124.0 85.3 7 11 1.2e-05 0.0096 16.7 1.2 1 23 197 219 197 220 0.97 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF627-204 - 351 3.2e-37 124.0 85.3 8 11 8.3e-06 0.0067 17.2 0.9 1 23 225 247 225 248 0.97 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF627-204 - 351 3.2e-37 124.0 85.3 9 11 7.5e-06 0.0061 17.3 3.1 3 23 255 275 253 276 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF627-204 - 351 3.2e-37 124.0 85.3 10 11 7e-06 0.0057 17.4 1.9 1 23 281 303 281 304 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF627-204 - 351 3.2e-37 124.0 85.3 11 11 4.9e-06 0.004 17.9 1.1 1 23 309 331 309 332 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF627-204 - 351 8.5e-15 54.3 73.5 1 10 2e-06 0.0017 18.3 0.1 2 25 57 80 57 82 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF627-204 - 351 8.5e-15 54.3 73.5 2 10 0.0012 0.95 9.5 0.9 2 11 85 94 85 96 0.92 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF627-204 - 351 8.5e-15 54.3 73.5 3 10 0.00093 0.76 9.8 0.9 2 12 113 123 113 123 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF627-204 - 351 8.5e-15 54.3 73.5 4 10 0.0046 3.7 7.7 3.2 2 12 141 151 141 153 0.95 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF627-204 - 351 8.5e-15 54.3 73.5 5 10 0.00093 0.76 9.8 2.4 2 24 169 191 169 194 0.79 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF627-204 - 351 8.5e-15 54.3 73.5 6 10 0.00073 0.6 10.2 0.9 2 24 197 219 196 221 0.87 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF627-204 - 351 8.5e-15 54.3 73.5 7 10 0.0015 1.3 9.2 0.8 2 11 225 234 225 235 0.95 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF627-204 - 351 8.5e-15 54.3 73.5 8 10 0.027 22 5.2 2.4 2 12 253 263 253 273 0.91 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF627-204 - 351 8.5e-15 54.3 73.5 9 10 0.004 3.3 7.8 1.1 2 12 281 291 281 293 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF627-204 - 351 8.5e-15 54.3 73.5 10 10 0.00051 0.41 10.7 0.8 2 12 309 319 309 321 0.93 C2H2-type zinc finger Zn-ribbon_8 PF09723.10 40 ZNF627-204 - 351 1.9e-10 40.7 61.8 1 10 0.0016 1.3 9.2 0.0 6 22 57 73 56 79 0.86 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF627-204 - 351 1.9e-10 40.7 61.8 2 10 1.9e-05 0.015 15.4 3.4 6 34 85 120 84 123 0.85 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF627-204 - 351 1.9e-10 40.7 61.8 3 10 0.0021 1.7 8.8 9.0 6 34 113 148 112 154 0.84 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF627-204 - 351 1.9e-10 40.7 61.8 4 10 0.00054 0.44 10.7 7.6 6 35 141 177 140 179 0.82 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF627-204 - 351 1.9e-10 40.7 61.8 5 10 0.005 4.1 7.6 7.1 6 36 169 206 168 207 0.68 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF627-204 - 351 1.9e-10 40.7 61.8 6 10 0.065 53 4.0 0.8 6 16 197 207 194 216 0.76 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF627-204 - 351 1.9e-10 40.7 61.8 7 10 3.3e-05 0.027 14.6 2.9 6 34 225 260 224 263 0.84 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF627-204 - 351 1.9e-10 40.7 61.8 8 10 0.00031 0.25 11.5 5.3 6 38 253 292 252 293 0.86 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF627-204 - 351 1.9e-10 40.7 61.8 9 10 3.7e-05 0.03 14.4 5.1 6 38 281 320 279 321 0.84 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF627-204 - 351 1.9e-10 40.7 61.8 10 10 0.0036 3 8.1 0.6 6 17 309 320 308 331 0.85 Zinc ribbon domain Zn_ribbon_SprT PF17283.2 38 ZNF627-204 - 351 4.9e-10 39.1 49.0 1 9 0.0017 1.4 8.9 0.1 9 35 33 67 33 71 0.93 SprT-like zinc ribbon domain Zn_ribbon_SprT PF17283.2 38 ZNF627-204 - 351 4.9e-10 39.1 49.0 2 9 3.1e-05 0.025 14.5 0.4 5 32 57 92 56 95 0.93 SprT-like zinc ribbon domain Zn_ribbon_SprT PF17283.2 38 ZNF627-204 - 351 4.9e-10 39.1 49.0 3 9 7.2e-06 0.0058 16.5 1.5 5 36 85 124 84 126 0.93 SprT-like zinc ribbon domain Zn_ribbon_SprT PF17283.2 38 ZNF627-204 - 351 4.9e-10 39.1 49.0 4 9 0.021 17 5.4 2.1 10 36 124 152 122 154 0.83 SprT-like zinc ribbon domain Zn_ribbon_SprT PF17283.2 38 ZNF627-204 - 351 4.9e-10 39.1 49.0 5 9 0.019 15 5.5 2.6 10 35 152 179 150 182 0.86 SprT-like zinc ribbon domain Zn_ribbon_SprT PF17283.2 38 ZNF627-204 - 351 4.9e-10 39.1 49.0 6 9 0.35 2.9e+02 1.5 3.7 5 35 169 207 168 210 0.84 SprT-like zinc ribbon domain Zn_ribbon_SprT PF17283.2 38 ZNF627-204 - 351 4.9e-10 39.1 49.0 7 9 0.034 28 4.7 2.8 7 31 199 231 196 231 0.88 SprT-like zinc ribbon domain Zn_ribbon_SprT PF17283.2 38 ZNF627-204 - 351 4.9e-10 39.1 49.0 8 9 3.8e-06 0.0031 17.4 1.2 5 36 225 264 224 266 0.93 SprT-like zinc ribbon domain Zn_ribbon_SprT PF17283.2 38 ZNF627-204 - 351 4.9e-10 39.1 49.0 9 9 6.4e-05 0.052 13.5 4.4 5 32 281 316 280 320 0.94 SprT-like zinc ribbon domain zf-C2H2_jaz PF12171.8 27 ZNF627-204 - 351 9.8e-07 28.9 54.5 1 10 0.015 12 6.3 0.0 2 24 57 79 56 80 0.87 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF627-204 - 351 9.8e-07 28.9 54.5 2 10 0.0016 1.3 9.4 0.1 2 24 85 107 84 107 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF627-204 - 351 9.8e-07 28.9 54.5 3 10 0.2 1.6e+02 2.7 1.5 2 22 113 133 112 135 0.75 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF627-204 - 351 9.8e-07 28.9 54.5 4 10 0.25 2.1e+02 2.4 1.9 2 23 141 162 140 163 0.77 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF627-204 - 351 9.8e-07 28.9 54.5 5 10 0.011 9.4 6.7 0.7 2 24 169 191 168 191 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF627-204 - 351 9.8e-07 28.9 54.5 6 10 0.51 4.1e+02 1.4 0.2 2 9 197 204 196 205 0.90 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF627-204 - 351 9.8e-07 28.9 54.5 7 10 0.003 2.5 8.5 0.2 2 24 225 247 224 247 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF627-204 - 351 9.8e-07 28.9 54.5 8 10 0.0056 4.6 7.6 0.9 2 22 253 273 252 273 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF627-204 - 351 9.8e-07 28.9 54.5 9 10 0.011 9 6.7 0.6 2 24 281 303 280 303 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF627-204 - 351 9.8e-07 28.9 54.5 10 10 0.00067 0.54 10.6 0.2 2 22 309 329 308 329 0.95 Zinc-finger double-stranded RNA-binding # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF627-204.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF627-204.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF627-204.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF627-204.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF627-204.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:11:22 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF627-205.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF627-205.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF627-205.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF627-205.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF627-205.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:11:22 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF627-206.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF627-206.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF627-206.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF627-206.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF627-206.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:11:22 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZNF629-201 - 869 1.6e-114 369.7 133.6 1 21 0.017 10 6.7 0.4 12 25 147 160 146 161 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF629-201 - 869 1.6e-114 369.7 133.6 2 21 6.3e-09 3.8e-06 27.1 0.3 2 25 165 188 164 189 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF629-201 - 869 1.6e-114 369.7 133.6 3 21 9.8e-11 5.8e-08 32.8 4.1 1 25 192 216 192 216 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF629-201 - 869 1.6e-114 369.7 133.6 4 21 5.6e-12 3.3e-09 36.7 0.9 1 25 220 244 220 245 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF629-201 - 869 1.6e-114 369.7 133.6 5 21 8.2e-10 4.9e-07 29.9 1.2 1 24 248 271 248 273 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF629-201 - 869 1.6e-114 369.7 133.6 6 21 2e-11 1.2e-08 35.0 0.2 2 25 277 300 276 301 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF629-201 - 869 1.6e-114 369.7 133.6 7 21 5.1e-09 3.1e-06 27.4 0.3 1 24 304 327 304 329 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF629-201 - 869 1.6e-114 369.7 133.6 8 21 3.7e-11 2.2e-08 34.1 1.1 2 26 333 357 332 357 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF629-201 - 869 1.6e-114 369.7 133.6 9 21 6.8e-09 4e-06 27.0 1.1 2 25 361 384 360 384 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF629-201 - 869 1.6e-114 369.7 133.6 10 21 9e-12 5.4e-09 36.1 1.1 2 25 389 412 388 412 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF629-201 - 869 1.6e-114 369.7 133.6 11 21 1.1e-06 0.00068 19.9 0.0 1 24 416 439 416 440 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF629-201 - 869 1.6e-114 369.7 133.6 12 21 2.2e-11 1.3e-08 34.8 0.4 2 24 445 467 444 469 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF629-201 - 869 1.6e-114 369.7 133.6 13 21 9.2e-12 5.5e-09 36.0 2.2 1 25 472 496 472 497 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF629-201 - 869 1.6e-114 369.7 133.6 14 21 2e-06 0.0012 19.2 0.0 1 24 500 523 500 525 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF629-201 - 869 1.6e-114 369.7 133.6 15 21 0.0064 3.9 8.1 0.3 11 25 565 579 563 580 0.90 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF629-201 - 869 1.6e-114 369.7 133.6 16 21 0.0061 3.7 8.2 0.2 3 16 585 598 584 598 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF629-201 - 869 1.6e-114 369.7 133.6 17 21 3.3 2e+03 -0.5 0.2 17 24 664 671 658 672 0.81 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF629-201 - 869 1.6e-114 369.7 133.6 18 21 0.018 11 6.7 5.1 13 24 712 723 677 724 0.61 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF629-201 - 869 1.6e-114 369.7 133.6 19 21 0.0085 5.1 7.7 0.0 5 24 758 777 755 778 0.82 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF629-201 - 869 1.6e-114 369.7 133.6 20 21 0.012 7 7.3 0.2 1 14 782 795 782 795 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF629-201 - 869 1.6e-114 369.7 133.6 21 21 0.003 1.8 9.1 0.2 12 25 839 852 835 853 0.90 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZNF629-201 - 869 5.2e-102 329.0 135.5 1 19 1.7e-09 9.9e-07 28.9 0.5 1 23 150 172 150 172 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF629-201 - 869 5.2e-102 329.0 135.5 2 19 8.6e-09 5.2e-06 26.6 3.0 2 23 179 200 179 200 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF629-201 - 869 5.2e-102 329.0 135.5 3 19 1.2e-08 7.2e-06 26.2 2.2 1 23 206 228 206 228 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF629-201 - 869 5.2e-102 329.0 135.5 4 19 1.9e-08 1.1e-05 25.6 1.3 1 23 234 256 234 256 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF629-201 - 869 5.2e-102 329.0 135.5 5 19 1.9e-07 0.00012 22.4 0.5 1 23 262 284 262 284 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF629-201 - 869 5.2e-102 329.0 135.5 6 19 5e-08 3e-05 24.2 1.7 1 23 290 312 290 312 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF629-201 - 869 5.2e-102 329.0 135.5 7 19 1.4e-09 8.5e-07 29.1 1.1 1 23 318 340 318 340 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF629-201 - 869 5.2e-102 329.0 135.5 8 19 4.5e-08 2.7e-05 24.4 1.6 1 23 346 368 346 368 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF629-201 - 869 5.2e-102 329.0 135.5 9 19 4e-08 2.4e-05 24.6 0.9 1 23 374 396 374 396 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF629-201 - 869 5.2e-102 329.0 135.5 10 19 8.2e-10 4.9e-07 29.8 0.3 1 23 402 424 402 424 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF629-201 - 869 5.2e-102 329.0 135.5 11 19 4.6e-08 2.8e-05 24.3 0.2 1 23 430 452 430 452 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF629-201 - 869 5.2e-102 329.0 135.5 12 19 1.5e-09 9e-07 29.0 3.4 1 23 458 480 458 480 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF629-201 - 869 5.2e-102 329.0 135.5 13 19 2e-10 1.2e-07 31.8 0.7 1 23 486 508 486 508 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF629-201 - 869 5.2e-102 329.0 135.5 14 19 0.00029 0.18 12.4 0.1 1 23 514 536 514 536 0.94 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF629-201 - 869 5.2e-102 329.0 135.5 15 19 0.00059 0.35 11.4 0.4 1 23 569 591 569 591 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF629-201 - 869 5.2e-102 329.0 135.5 16 19 0.00026 0.16 12.5 0.8 1 23 662 684 662 684 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF629-201 - 869 5.2e-102 329.0 135.5 17 19 1.7e-05 0.01 16.3 0.3 1 23 714 736 714 736 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF629-201 - 869 5.2e-102 329.0 135.5 18 19 0.00015 0.09 13.3 0.5 1 23 768 790 768 790 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF629-201 - 869 5.2e-102 329.0 135.5 19 19 0.1 61 4.4 0.2 1 20 842 861 842 864 0.87 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZNF629-201 - 869 2.4e-65 211.5 128.8 1 19 2.9e-06 0.0017 19.0 0.6 1 23 150 172 150 173 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF629-201 - 869 2.4e-65 211.5 128.8 2 19 3e-05 0.018 15.9 2.2 2 23 179 200 178 201 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF629-201 - 869 2.4e-65 211.5 128.8 3 19 6.3e-05 0.038 14.8 2.3 1 23 206 228 206 229 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF629-201 - 869 2.4e-65 211.5 128.8 4 19 2.8e-05 0.017 15.9 1.0 1 23 234 256 234 257 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF629-201 - 869 2.4e-65 211.5 128.8 5 19 0.00035 0.21 12.5 0.4 1 23 262 284 262 285 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF629-201 - 869 2.4e-65 211.5 128.8 6 19 3.6e-06 0.0022 18.7 0.9 1 23 290 312 290 313 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF629-201 - 869 2.4e-65 211.5 128.8 7 19 8.5e-06 0.0051 17.5 0.8 1 23 318 340 318 341 0.97 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF629-201 - 869 2.4e-65 211.5 128.8 8 19 0.00014 0.086 13.7 1.2 1 23 346 368 346 369 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF629-201 - 869 2.4e-65 211.5 128.8 9 19 3.3e-07 0.0002 21.9 0.7 1 23 374 396 374 397 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF629-201 - 869 2.4e-65 211.5 128.8 10 19 1.9e-06 0.0011 19.6 0.4 1 23 402 424 402 425 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF629-201 - 869 2.4e-65 211.5 128.8 11 19 0.00034 0.2 12.6 0.1 1 23 430 452 430 453 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF629-201 - 869 2.4e-65 211.5 128.8 12 19 8.6e-06 0.0051 17.5 2.2 1 23 458 480 458 481 0.97 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF629-201 - 869 2.4e-65 211.5 128.8 13 19 1.1e-07 6.3e-05 23.5 0.6 1 23 486 508 486 509 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF629-201 - 869 2.4e-65 211.5 128.8 14 19 0.0013 0.78 10.7 0.2 1 23 514 536 514 537 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF629-201 - 869 2.4e-65 211.5 128.8 15 19 0.0025 1.5 9.8 0.2 1 23 569 591 569 592 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF629-201 - 869 2.4e-65 211.5 128.8 16 19 1.1e-05 0.0066 17.2 0.5 1 23 662 684 662 685 0.97 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF629-201 - 869 2.4e-65 211.5 128.8 17 19 0.00031 0.19 12.7 0.5 1 23 714 736 714 737 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF629-201 - 869 2.4e-65 211.5 128.8 18 19 4.6e-05 0.028 15.3 0.4 1 23 768 790 768 791 0.97 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF629-201 - 869 2.4e-65 211.5 128.8 19 19 0.0066 3.9 8.6 0.3 1 19 842 860 842 864 0.87 C2H2-type zinc finger zf-C2H2_jaz PF12171.8 27 ZNF629-201 - 869 6e-27 93.3 72.9 1 20 0.61 3.7e+02 1.6 0.1 2 12 150 160 149 170 0.85 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF629-201 - 869 6e-27 93.3 72.9 2 20 0.022 13 6.2 0.7 4 24 180 200 177 200 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF629-201 - 869 6e-27 93.3 72.9 3 20 0.2 1.2e+02 3.1 0.7 2 24 206 228 205 228 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF629-201 - 869 6e-27 93.3 72.9 4 20 0.0027 1.6 9.1 1.0 2 24 234 256 233 256 0.95 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF629-201 - 869 6e-27 93.3 72.9 5 20 0.014 8.2 6.8 0.1 2 23 262 283 261 284 0.91 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF629-201 - 869 6e-27 93.3 72.9 6 20 0.017 10 6.5 0.2 2 22 290 310 289 310 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF629-201 - 869 6e-27 93.3 72.9 7 20 0.00027 0.16 12.3 0.2 2 24 318 340 317 340 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF629-201 - 869 6e-27 93.3 72.9 8 20 0.00015 0.09 13.1 0.2 2 24 346 368 345 369 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF629-201 - 869 6e-27 93.3 72.9 9 20 0.0017 0.99 9.8 0.0 2 24 374 396 373 396 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF629-201 - 869 6e-27 93.3 72.9 10 20 0.0036 2.1 8.7 0.0 2 22 402 422 401 422 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF629-201 - 869 6e-27 93.3 72.9 11 20 0.0092 5.5 7.4 0.0 2 22 430 450 429 450 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF629-201 - 869 6e-27 93.3 72.9 12 20 0.0018 1.1 9.7 0.4 2 24 458 480 457 480 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF629-201 - 869 6e-27 93.3 72.9 13 20 0.00054 0.32 11.3 0.1 2 24 486 508 485 508 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF629-201 - 869 6e-27 93.3 72.9 14 20 0.12 69 3.9 0.2 2 20 514 532 513 533 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF629-201 - 869 6e-27 93.3 72.9 15 20 0.00014 0.083 13.2 0.0 2 22 569 589 568 589 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF629-201 - 869 6e-27 93.3 72.9 16 20 0.012 7.1 7.0 0.1 2 23 662 683 661 685 0.91 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF629-201 - 869 6e-27 93.3 72.9 17 20 2.7 1.6e+03 -0.4 0.1 2 11 714 723 713 734 0.73 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF629-201 - 869 6e-27 93.3 72.9 18 20 2.5 1.5e+03 -0.4 0.1 12 23 750 761 750 761 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF629-201 - 869 6e-27 93.3 72.9 19 20 0.52 3.1e+02 1.8 0.0 2 23 768 789 767 790 0.89 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF629-201 - 869 6e-27 93.3 72.9 20 20 2.7 1.6e+03 -0.5 0.0 4 21 844 861 842 862 0.88 Zinc-finger double-stranded RNA-binding zf_UBZ PF18439.1 32 ZNF629-201 - 869 5.6e-23 80.2 76.3 1 19 0.00038 0.23 11.1 0.1 3 20 150 168 148 169 0.86 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF629-201 - 869 5.6e-23 80.2 76.3 2 19 0.0079 4.7 6.9 0.3 4 20 179 196 177 197 0.79 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF629-201 - 869 5.6e-23 80.2 76.3 3 19 0.006 3.6 7.3 0.5 3 20 206 224 204 225 0.76 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF629-201 - 869 5.6e-23 80.2 76.3 4 19 0.17 1e+02 2.6 0.3 3 15 234 246 232 253 0.77 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF629-201 - 869 5.6e-23 80.2 76.3 5 19 0.27 1.6e+02 2.0 0.1 3 21 262 281 260 281 0.87 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF629-201 - 869 5.6e-23 80.2 76.3 6 19 0.0046 2.7 7.6 0.2 3 15 290 302 288 309 0.75 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF629-201 - 869 5.6e-23 80.2 76.3 7 19 0.00052 0.31 10.7 0.3 3 21 318 337 316 337 0.93 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF629-201 - 869 5.6e-23 80.2 76.3 8 19 0.078 47 3.7 0.2 3 15 346 358 344 365 0.78 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF629-201 - 869 5.6e-23 80.2 76.3 9 19 0.052 31 4.3 0.0 2 18 373 390 372 393 0.76 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF629-201 - 869 5.6e-23 80.2 76.3 10 19 0.00051 0.3 10.7 0.1 3 19 402 419 400 421 0.81 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF629-201 - 869 5.6e-23 80.2 76.3 11 19 0.0057 3.4 7.3 0.1 3 15 430 442 428 449 0.81 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF629-201 - 869 5.6e-23 80.2 76.3 12 19 0.0076 4.6 6.9 0.2 3 15 458 470 456 477 0.79 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF629-201 - 869 5.6e-23 80.2 76.3 13 19 0.00072 0.43 10.2 0.2 3 16 486 500 484 504 0.81 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF629-201 - 869 5.6e-23 80.2 76.3 14 19 0.00012 0.075 12.6 0.2 2 20 513 532 512 533 0.92 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF629-201 - 869 5.6e-23 80.2 76.3 15 19 7 4.2e+03 -2.5 0.1 4 20 570 587 569 588 0.75 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF629-201 - 869 5.6e-23 80.2 76.3 16 19 0.0028 1.7 8.3 0.1 2 16 661 676 660 681 0.78 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF629-201 - 869 5.6e-23 80.2 76.3 17 19 0.016 9.8 5.9 0.1 3 17 714 729 712 733 0.76 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF629-201 - 869 5.6e-23 80.2 76.3 18 19 0.082 49 3.6 0.0 3 20 768 786 766 787 0.81 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF629-201 - 869 5.6e-23 80.2 76.3 19 19 0.032 19 4.9 0.0 3 13 842 852 840 860 0.83 Ubiquitin-Binding Zinc Finger zf-C2H2_6 PF13912.6 27 ZNF629-201 - 869 3.4e-22 77.9 124.7 1 19 0.0011 0.68 10.0 0.6 2 12 150 160 150 161 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF629-201 - 869 3.4e-22 77.9 124.7 2 19 0.0086 5.1 7.2 1.3 4 12 180 188 179 202 0.76 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF629-201 - 869 3.4e-22 77.9 124.7 3 19 0.39 2.4e+02 1.9 1.6 2 24 206 228 206 231 0.86 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF629-201 - 869 3.4e-22 77.9 124.7 4 19 8e-06 0.0048 16.9 1.4 2 24 234 256 234 259 0.95 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF629-201 - 869 3.4e-22 77.9 124.7 5 19 0.23 1.3e+02 2.7 0.5 2 24 262 284 262 287 0.92 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF629-201 - 869 3.4e-22 77.9 124.7 6 19 0.00079 0.47 10.5 1.1 2 22 290 310 290 314 0.82 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF629-201 - 869 3.4e-22 77.9 124.7 7 19 0.00031 0.19 11.8 1.1 2 24 318 340 318 343 0.88 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF629-201 - 869 3.4e-22 77.9 124.7 8 19 0.00091 0.55 10.3 2.5 2 26 346 370 346 371 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF629-201 - 869 3.4e-22 77.9 124.7 9 19 0.0021 1.3 9.2 0.5 2 11 374 383 374 385 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF629-201 - 869 3.4e-22 77.9 124.7 10 19 4.5e-05 0.027 14.5 0.2 2 26 402 426 402 427 0.91 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF629-201 - 869 3.4e-22 77.9 124.7 11 19 0.21 1.3e+02 2.8 0.0 2 11 430 439 430 450 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF629-201 - 869 3.4e-22 77.9 124.7 12 19 0.0017 1 9.5 1.7 2 24 458 480 458 483 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF629-201 - 869 3.4e-22 77.9 124.7 13 19 2.7e-07 0.00016 21.6 0.3 2 27 486 511 486 511 0.96 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF629-201 - 869 3.4e-22 77.9 124.7 14 19 0.2 1.2e+02 2.8 0.2 2 11 514 523 513 537 0.85 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF629-201 - 869 3.4e-22 77.9 124.7 15 19 0.1 62 3.8 0.4 2 12 569 579 569 579 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF629-201 - 869 3.4e-22 77.9 124.7 16 19 0.093 55 3.9 0.7 2 11 662 671 661 671 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF629-201 - 869 3.4e-22 77.9 124.7 17 19 0.05 30 4.8 1.1 2 11 714 723 714 724 0.92 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF629-201 - 869 3.4e-22 77.9 124.7 18 19 0.25 1.5e+02 2.6 0.2 2 24 768 790 768 793 0.81 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF629-201 - 869 3.4e-22 77.9 124.7 19 19 0.00081 0.49 10.5 0.1 2 25 842 865 842 867 0.94 C2H2-type zinc finger Zn-ribbon_8 PF09723.10 40 ZNF629-201 - 869 7e-17 61.3 81.6 1 19 3e-05 0.018 15.2 1.0 6 35 150 186 149 190 0.86 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF629-201 - 869 7e-17 61.3 81.6 2 19 0.0011 0.63 10.2 5.1 8 34 180 213 176 216 0.89 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF629-201 - 869 7e-17 61.3 81.6 3 19 0.011 6.8 6.9 6.4 6 35 206 242 204 247 0.88 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF629-201 - 869 7e-17 61.3 81.6 4 19 0.0056 3.4 7.9 4.6 6 34 234 269 233 274 0.90 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF629-201 - 869 7e-17 61.3 81.6 5 19 0.00075 0.45 10.7 3.9 6 34 262 297 260 302 0.87 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF629-201 - 869 7e-17 61.3 81.6 6 19 8e-05 0.048 13.8 3.9 6 34 290 325 288 329 0.94 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF629-201 - 869 7e-17 61.3 81.6 7 19 0.0088 5.2 7.3 0.5 6 16 318 328 317 340 0.83 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF629-201 - 869 7e-17 61.3 81.6 8 19 5.8e-05 0.035 14.2 1.2 6 35 346 382 345 385 0.86 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF629-201 - 869 7e-17 61.3 81.6 9 19 2.1e-05 0.013 15.6 1.9 6 34 374 409 372 414 0.90 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF629-201 - 869 7e-17 61.3 81.6 10 19 5.4e-05 0.032 14.3 0.9 6 34 402 437 401 440 0.93 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF629-201 - 869 7e-17 61.3 81.6 11 19 0.00027 0.16 12.1 0.9 6 35 430 466 428 471 0.90 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF629-201 - 869 7e-17 61.3 81.6 12 19 2.1e-05 0.013 15.7 2.7 6 35 458 494 456 498 0.81 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF629-201 - 869 7e-17 61.3 81.6 13 19 0.00041 0.24 11.5 2.4 6 34 486 521 484 525 0.84 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF629-201 - 869 7e-17 61.3 81.6 14 19 0.18 1.1e+02 3.0 0.2 6 16 514 524 513 533 0.82 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF629-201 - 869 7e-17 61.3 81.6 15 19 2.6 1.6e+03 -0.7 0.1 7 16 570 579 569 594 0.79 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF629-201 - 869 7e-17 61.3 81.6 16 19 0.23 1.4e+02 2.7 0.0 6 15 662 671 658 680 0.82 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF629-201 - 869 7e-17 61.3 81.6 17 19 0.52 3.1e+02 1.6 0.2 6 14 714 722 710 728 0.68 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF629-201 - 869 7e-17 61.3 81.6 18 19 0.14 86 3.4 0.1 6 17 768 779 767 792 0.77 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF629-201 - 869 7e-17 61.3 81.6 19 19 0.033 20 5.4 0.0 26 34 840 849 833 858 0.68 Zinc ribbon domain C1_4 PF07975.12 55 ZNF629-201 - 869 7.5e-11 42.1 50.7 1 15 2 1.2e+03 -0.2 0.0 25 38 149 162 139 174 0.73 TFIIH C1-like domain C1_4 PF07975.12 55 ZNF629-201 - 869 7.5e-11 42.1 50.7 2 15 0.02 12 6.2 3.2 1 48 179 228 179 231 0.79 TFIIH C1-like domain C1_4 PF07975.12 55 ZNF629-201 - 869 7.5e-11 42.1 50.7 3 15 0.00013 0.08 13.2 1.6 1 49 235 285 235 287 0.86 TFIIH C1-like domain C1_4 PF07975.12 55 ZNF629-201 - 869 7.5e-11 42.1 50.7 4 15 0.083 50 4.2 0.2 21 49 285 313 279 315 0.81 TFIIH C1-like domain C1_4 PF07975.12 55 ZNF629-201 - 869 7.5e-11 42.1 50.7 5 15 0.023 14 6.0 1.7 2 37 292 329 291 343 0.76 TFIIH C1-like domain C1_4 PF07975.12 55 ZNF629-201 - 869 7.5e-11 42.1 50.7 6 15 0.038 22 5.3 2.5 2 35 320 355 318 368 0.83 TFIIH C1-like domain C1_4 PF07975.12 55 ZNF629-201 - 869 7.5e-11 42.1 50.7 7 15 0.006 3.6 7.9 0.6 1 48 347 396 347 398 0.80 TFIIH C1-like domain C1_4 PF07975.12 55 ZNF629-201 - 869 7.5e-11 42.1 50.7 8 15 0.0012 0.74 10.1 0.2 2 49 376 425 375 428 0.77 TFIIH C1-like domain C1_4 PF07975.12 55 ZNF629-201 - 869 7.5e-11 42.1 50.7 9 15 0.06 36 4.7 0.6 2 48 404 452 403 456 0.70 TFIIH C1-like domain C1_4 PF07975.12 55 ZNF629-201 - 869 7.5e-11 42.1 50.7 10 15 0.13 81 3.6 1.5 2 35 432 467 431 483 0.78 TFIIH C1-like domain C1_4 PF07975.12 55 ZNF629-201 - 869 7.5e-11 42.1 50.7 11 15 0.37 2.2e+02 2.2 5.6 1 39 459 499 459 521 0.74 TFIIH C1-like domain C1_4 PF07975.12 55 ZNF629-201 - 869 7.5e-11 42.1 50.7 12 15 0.3 1.8e+02 2.4 0.0 20 35 656 671 642 684 0.78 TFIIH C1-like domain C1_4 PF07975.12 55 ZNF629-201 - 869 7.5e-11 42.1 50.7 13 15 0.00058 0.35 11.2 0.0 25 49 713 737 705 739 0.90 TFIIH C1-like domain C1_4 PF07975.12 55 ZNF629-201 - 869 7.5e-11 42.1 50.7 14 15 0.85 5.1e+02 1.0 0.0 24 35 766 777 746 780 0.83 TFIIH C1-like domain C1_4 PF07975.12 55 ZNF629-201 - 869 7.5e-11 42.1 50.7 15 15 2.9 1.7e+03 -0.7 0.0 21 35 837 851 823 865 0.72 TFIIH C1-like domain DZR PF12773.7 49 ZNF629-201 - 869 1e-10 41.5 65.4 1 5 0.00017 0.1 12.7 3.6 1 42 432 499 420 503 0.76 Double zinc ribbon DZR PF12773.7 49 ZNF629-201 - 869 1e-10 41.5 65.4 2 5 0.0036 2.1 8.4 0.6 1 37 488 577 488 584 0.79 Double zinc ribbon DZR PF12773.7 49 ZNF629-201 - 869 1e-10 41.5 65.4 3 5 0.019 11 6.1 0.0 10 37 659 722 638 729 0.80 Double zinc ribbon DZR PF12773.7 49 ZNF629-201 - 869 1e-10 41.5 65.4 4 5 0.092 55 3.9 0.5 15 35 716 774 664 783 0.53 Double zinc ribbon DZR PF12773.7 49 ZNF629-201 - 869 1e-10 41.5 65.4 5 5 0.056 34 4.6 0.1 9 27 838 856 817 865 0.69 Double zinc ribbon # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF629-201.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF629-201.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF629-201.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF629-201.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF629-201.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:11:23 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-C2H2 PF00096.26 23 ZNF639-201 - 485 2.3e-15 56.1 55.4 1 9 8.7e-05 0.16 12.5 1.4 1 23 204 227 204 227 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF639-201 - 485 2.3e-15 56.1 55.4 2 9 1.8e-05 0.032 14.7 0.3 2 23 234 255 234 255 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF639-201 - 485 2.3e-15 56.1 55.4 3 9 0.00085 1.5 9.4 0.3 1 23 260 283 260 283 0.93 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF639-201 - 485 2.3e-15 56.1 55.4 4 9 0.00035 0.62 10.6 0.3 3 23 291 311 289 311 0.95 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF639-201 - 485 2.3e-15 56.1 55.4 5 9 0.019 33 5.2 0.9 1 23 317 340 317 340 0.88 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF639-201 - 485 2.3e-15 56.1 55.4 6 9 0.0038 6.7 7.4 0.5 1 23 374 397 374 397 0.94 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF639-201 - 485 2.3e-15 56.1 55.4 7 9 1.7e-05 0.03 14.8 2.9 1 23 403 425 403 425 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF639-201 - 485 2.3e-15 56.1 55.4 8 9 0.0042 7.5 7.2 0.3 1 22 431 452 431 454 0.88 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF639-201 - 485 2.3e-15 56.1 55.4 9 9 0.00093 1.7 9.3 0.4 1 20 460 479 460 482 0.93 Zinc finger, C2H2 type zf-H2C2_5 PF13909.6 26 ZNF639-201 - 485 1.1e-12 47.5 32.8 1 6 1e-06 0.0019 17.9 2.7 1 25 204 228 204 229 0.95 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 ZNF639-201 - 485 1.1e-12 47.5 32.8 2 6 2e-07 0.00037 20.2 0.3 3 24 262 283 260 284 0.94 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 ZNF639-201 - 485 1.1e-12 47.5 32.8 3 6 0.086 1.5e+02 2.2 1.1 1 7 289 295 289 312 0.69 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 ZNF639-201 - 485 1.1e-12 47.5 32.8 4 6 0.066 1.2e+02 2.6 0.4 2 22 318 338 317 341 0.86 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 ZNF639-201 - 485 1.1e-12 47.5 32.8 5 6 0.011 20 5.0 0.2 3 25 376 398 374 399 0.88 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 ZNF639-201 - 485 1.1e-12 47.5 32.8 6 6 8.1e-07 0.0014 18.3 0.2 2 25 432 455 431 456 0.93 C2H2-type zinc-finger domain zf-C2H2_4 PF13894.6 24 ZNF639-201 - 485 1.9e-12 46.9 56.9 1 9 0.00016 0.28 12.1 1.4 1 24 204 227 204 227 0.90 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF639-201 - 485 1.9e-12 46.9 56.9 2 9 0.00017 0.3 12.0 0.2 2 23 234 255 233 256 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF639-201 - 485 1.9e-12 46.9 56.9 3 9 0.016 29 5.9 0.2 1 22 260 281 260 283 0.69 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF639-201 - 485 1.9e-12 46.9 56.9 4 9 2.7e-05 0.049 14.5 0.9 1 23 289 311 289 312 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF639-201 - 485 1.9e-12 46.9 56.9 5 9 0.018 31 5.7 1.1 1 24 317 340 317 340 0.90 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF639-201 - 485 1.9e-12 46.9 56.9 6 9 0.0093 17 6.6 0.6 1 24 374 397 374 397 0.84 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF639-201 - 485 1.9e-12 46.9 56.9 7 9 3.6e-05 0.064 14.1 2.4 1 23 403 425 403 426 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF639-201 - 485 1.9e-12 46.9 56.9 8 9 0.047 83 4.4 0.3 1 24 431 454 431 454 0.69 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF639-201 - 485 1.9e-12 46.9 56.9 9 9 0.0041 7.4 7.7 0.4 1 23 460 482 460 483 0.91 C2H2-type zinc finger zf-H2C2_2 PF13465.6 26 ZNF639-201 - 485 5.2e-11 42.5 47.7 1 9 0.096 1.7e+02 2.9 0.5 15 25 204 214 199 216 0.80 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF639-201 - 485 5.2e-11 42.5 47.7 2 9 0.01 18 5.9 0.4 1 26 218 244 218 244 0.87 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF639-201 - 485 5.2e-11 42.5 47.7 3 9 0.0018 3.3 8.3 0.6 5 24 251 269 248 270 0.83 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF639-201 - 485 5.2e-11 42.5 47.7 4 9 0.0019 3.5 8.2 0.1 1 25 274 299 274 300 0.90 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF639-201 - 485 5.2e-11 42.5 47.7 5 9 0.79 1.4e+03 -0.0 2.6 2 21 304 323 303 327 0.82 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF639-201 - 485 5.2e-11 42.5 47.7 6 9 1.1 2e+03 -0.5 1.1 12 22 371 381 370 383 0.83 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF639-201 - 485 5.2e-11 42.5 47.7 7 9 4.5e-08 8.2e-05 22.9 0.1 1 26 388 414 388 414 0.90 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF639-201 - 485 5.2e-11 42.5 47.7 8 9 0.00012 0.22 12.0 0.1 4 25 420 441 420 442 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF639-201 - 485 5.2e-11 42.5 47.7 9 9 0.00037 0.66 10.5 0.2 2 26 446 471 445 471 0.87 Zinc-finger double domain # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF639-201.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF639-201.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF639-201.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF639-201.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF639-201.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:11:23 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF639-202.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF639-202.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF639-202.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF639-202.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF639-202.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:11:24 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF639-203.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF639-203.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF639-203.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF639-203.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF639-203.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:11:24 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF639-204.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF639-204.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF639-204.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF639-204.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF639-204.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:11:24 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF639-205.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF639-205.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF639-205.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF639-205.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF639-205.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:11:25 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-C2H2 PF00096.26 23 ZNF639-206 - 485 2.3e-15 56.1 55.4 1 9 8.7e-05 0.16 12.5 1.4 1 23 204 227 204 227 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF639-206 - 485 2.3e-15 56.1 55.4 2 9 1.8e-05 0.032 14.7 0.3 2 23 234 255 234 255 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF639-206 - 485 2.3e-15 56.1 55.4 3 9 0.00085 1.5 9.4 0.3 1 23 260 283 260 283 0.93 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF639-206 - 485 2.3e-15 56.1 55.4 4 9 0.00035 0.62 10.6 0.3 3 23 291 311 289 311 0.95 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF639-206 - 485 2.3e-15 56.1 55.4 5 9 0.019 33 5.2 0.9 1 23 317 340 317 340 0.88 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF639-206 - 485 2.3e-15 56.1 55.4 6 9 0.0038 6.7 7.4 0.5 1 23 374 397 374 397 0.94 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF639-206 - 485 2.3e-15 56.1 55.4 7 9 1.7e-05 0.03 14.8 2.9 1 23 403 425 403 425 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF639-206 - 485 2.3e-15 56.1 55.4 8 9 0.0042 7.5 7.2 0.3 1 22 431 452 431 454 0.88 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF639-206 - 485 2.3e-15 56.1 55.4 9 9 0.00093 1.7 9.3 0.4 1 20 460 479 460 482 0.93 Zinc finger, C2H2 type zf-H2C2_5 PF13909.6 26 ZNF639-206 - 485 1.1e-12 47.5 32.8 1 6 1e-06 0.0019 17.9 2.7 1 25 204 228 204 229 0.95 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 ZNF639-206 - 485 1.1e-12 47.5 32.8 2 6 2e-07 0.00037 20.2 0.3 3 24 262 283 260 284 0.94 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 ZNF639-206 - 485 1.1e-12 47.5 32.8 3 6 0.086 1.5e+02 2.2 1.1 1 7 289 295 289 312 0.69 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 ZNF639-206 - 485 1.1e-12 47.5 32.8 4 6 0.066 1.2e+02 2.6 0.4 2 22 318 338 317 341 0.86 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 ZNF639-206 - 485 1.1e-12 47.5 32.8 5 6 0.011 20 5.0 0.2 3 25 376 398 374 399 0.88 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 ZNF639-206 - 485 1.1e-12 47.5 32.8 6 6 8.1e-07 0.0014 18.3 0.2 2 25 432 455 431 456 0.93 C2H2-type zinc-finger domain zf-C2H2_4 PF13894.6 24 ZNF639-206 - 485 1.9e-12 46.9 56.9 1 9 0.00016 0.28 12.1 1.4 1 24 204 227 204 227 0.90 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF639-206 - 485 1.9e-12 46.9 56.9 2 9 0.00017 0.3 12.0 0.2 2 23 234 255 233 256 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF639-206 - 485 1.9e-12 46.9 56.9 3 9 0.016 29 5.9 0.2 1 22 260 281 260 283 0.69 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF639-206 - 485 1.9e-12 46.9 56.9 4 9 2.7e-05 0.049 14.5 0.9 1 23 289 311 289 312 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF639-206 - 485 1.9e-12 46.9 56.9 5 9 0.018 31 5.7 1.1 1 24 317 340 317 340 0.90 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF639-206 - 485 1.9e-12 46.9 56.9 6 9 0.0093 17 6.6 0.6 1 24 374 397 374 397 0.84 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF639-206 - 485 1.9e-12 46.9 56.9 7 9 3.6e-05 0.064 14.1 2.4 1 23 403 425 403 426 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF639-206 - 485 1.9e-12 46.9 56.9 8 9 0.047 83 4.4 0.3 1 24 431 454 431 454 0.69 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF639-206 - 485 1.9e-12 46.9 56.9 9 9 0.0041 7.4 7.7 0.4 1 23 460 482 460 483 0.91 C2H2-type zinc finger zf-H2C2_2 PF13465.6 26 ZNF639-206 - 485 5.2e-11 42.5 47.7 1 9 0.096 1.7e+02 2.9 0.5 15 25 204 214 199 216 0.80 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF639-206 - 485 5.2e-11 42.5 47.7 2 9 0.01 18 5.9 0.4 1 26 218 244 218 244 0.87 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF639-206 - 485 5.2e-11 42.5 47.7 3 9 0.0018 3.3 8.3 0.6 5 24 251 269 248 270 0.83 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF639-206 - 485 5.2e-11 42.5 47.7 4 9 0.0019 3.5 8.2 0.1 1 25 274 299 274 300 0.90 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF639-206 - 485 5.2e-11 42.5 47.7 5 9 0.79 1.4e+03 -0.0 2.6 2 21 304 323 303 327 0.82 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF639-206 - 485 5.2e-11 42.5 47.7 6 9 1.1 2e+03 -0.5 1.1 12 22 371 381 370 383 0.83 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF639-206 - 485 5.2e-11 42.5 47.7 7 9 4.5e-08 8.2e-05 22.9 0.1 1 26 388 414 388 414 0.90 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF639-206 - 485 5.2e-11 42.5 47.7 8 9 0.00012 0.22 12.0 0.1 4 25 420 441 420 442 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF639-206 - 485 5.2e-11 42.5 47.7 9 9 0.00037 0.66 10.5 0.2 2 26 446 471 445 471 0.87 Zinc-finger double domain # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF639-206.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF639-206.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF639-206.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF639-206.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF639-206.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:11:25 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF639-207.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF639-207.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF639-207.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF639-207.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF639-207.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:11:25 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF639-208.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF639-208.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF639-208.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF639-208.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF639-208.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:11:26 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-C2H2 PF00096.26 23 ZNF639-209 - 485 2.3e-15 56.1 55.4 1 9 8.7e-05 0.16 12.5 1.4 1 23 204 227 204 227 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF639-209 - 485 2.3e-15 56.1 55.4 2 9 1.8e-05 0.032 14.7 0.3 2 23 234 255 234 255 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF639-209 - 485 2.3e-15 56.1 55.4 3 9 0.00085 1.5 9.4 0.3 1 23 260 283 260 283 0.93 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF639-209 - 485 2.3e-15 56.1 55.4 4 9 0.00035 0.62 10.6 0.3 3 23 291 311 289 311 0.95 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF639-209 - 485 2.3e-15 56.1 55.4 5 9 0.019 33 5.2 0.9 1 23 317 340 317 340 0.88 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF639-209 - 485 2.3e-15 56.1 55.4 6 9 0.0038 6.7 7.4 0.5 1 23 374 397 374 397 0.94 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF639-209 - 485 2.3e-15 56.1 55.4 7 9 1.7e-05 0.03 14.8 2.9 1 23 403 425 403 425 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF639-209 - 485 2.3e-15 56.1 55.4 8 9 0.0042 7.5 7.2 0.3 1 22 431 452 431 454 0.88 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF639-209 - 485 2.3e-15 56.1 55.4 9 9 0.00093 1.7 9.3 0.4 1 20 460 479 460 482 0.93 Zinc finger, C2H2 type zf-H2C2_5 PF13909.6 26 ZNF639-209 - 485 1.1e-12 47.5 32.8 1 6 1e-06 0.0019 17.9 2.7 1 25 204 228 204 229 0.95 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 ZNF639-209 - 485 1.1e-12 47.5 32.8 2 6 2e-07 0.00037 20.2 0.3 3 24 262 283 260 284 0.94 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 ZNF639-209 - 485 1.1e-12 47.5 32.8 3 6 0.086 1.5e+02 2.2 1.1 1 7 289 295 289 312 0.69 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 ZNF639-209 - 485 1.1e-12 47.5 32.8 4 6 0.066 1.2e+02 2.6 0.4 2 22 318 338 317 341 0.86 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 ZNF639-209 - 485 1.1e-12 47.5 32.8 5 6 0.011 20 5.0 0.2 3 25 376 398 374 399 0.88 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 ZNF639-209 - 485 1.1e-12 47.5 32.8 6 6 8.1e-07 0.0014 18.3 0.2 2 25 432 455 431 456 0.93 C2H2-type zinc-finger domain zf-C2H2_4 PF13894.6 24 ZNF639-209 - 485 1.9e-12 46.9 56.9 1 9 0.00016 0.28 12.1 1.4 1 24 204 227 204 227 0.90 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF639-209 - 485 1.9e-12 46.9 56.9 2 9 0.00017 0.3 12.0 0.2 2 23 234 255 233 256 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF639-209 - 485 1.9e-12 46.9 56.9 3 9 0.016 29 5.9 0.2 1 22 260 281 260 283 0.69 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF639-209 - 485 1.9e-12 46.9 56.9 4 9 2.7e-05 0.049 14.5 0.9 1 23 289 311 289 312 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF639-209 - 485 1.9e-12 46.9 56.9 5 9 0.018 31 5.7 1.1 1 24 317 340 317 340 0.90 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF639-209 - 485 1.9e-12 46.9 56.9 6 9 0.0093 17 6.6 0.6 1 24 374 397 374 397 0.84 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF639-209 - 485 1.9e-12 46.9 56.9 7 9 3.6e-05 0.064 14.1 2.4 1 23 403 425 403 426 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF639-209 - 485 1.9e-12 46.9 56.9 8 9 0.047 83 4.4 0.3 1 24 431 454 431 454 0.69 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF639-209 - 485 1.9e-12 46.9 56.9 9 9 0.0041 7.4 7.7 0.4 1 23 460 482 460 483 0.91 C2H2-type zinc finger zf-H2C2_2 PF13465.6 26 ZNF639-209 - 485 5.2e-11 42.5 47.7 1 9 0.096 1.7e+02 2.9 0.5 15 25 204 214 199 216 0.80 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF639-209 - 485 5.2e-11 42.5 47.7 2 9 0.01 18 5.9 0.4 1 26 218 244 218 244 0.87 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF639-209 - 485 5.2e-11 42.5 47.7 3 9 0.0018 3.3 8.3 0.6 5 24 251 269 248 270 0.83 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF639-209 - 485 5.2e-11 42.5 47.7 4 9 0.0019 3.5 8.2 0.1 1 25 274 299 274 300 0.90 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF639-209 - 485 5.2e-11 42.5 47.7 5 9 0.79 1.4e+03 -0.0 2.6 2 21 304 323 303 327 0.82 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF639-209 - 485 5.2e-11 42.5 47.7 6 9 1.1 2e+03 -0.5 1.1 12 22 371 381 370 383 0.83 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF639-209 - 485 5.2e-11 42.5 47.7 7 9 4.5e-08 8.2e-05 22.9 0.1 1 26 388 414 388 414 0.90 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF639-209 - 485 5.2e-11 42.5 47.7 8 9 0.00012 0.22 12.0 0.1 4 25 420 441 420 442 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF639-209 - 485 5.2e-11 42.5 47.7 9 9 0.00037 0.66 10.5 0.2 2 26 446 471 445 471 0.87 Zinc-finger double domain # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF639-209.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF639-209.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF639-209.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF639-209.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF639-209.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:11:26 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-C2H2 PF00096.26 23 ZNF639-210 - 441 9.1e-16 57.4 55.4 1 9 7.7e-05 0.14 12.7 1.4 1 23 160 183 160 183 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF639-210 - 441 9.1e-16 57.4 55.4 2 9 1.6e-05 0.029 14.8 0.3 2 23 190 211 190 211 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF639-210 - 441 9.1e-16 57.4 55.4 3 9 0.00075 1.4 9.6 0.3 1 23 216 239 216 239 0.93 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF639-210 - 441 9.1e-16 57.4 55.4 4 9 0.00031 0.55 10.8 0.3 3 23 247 267 245 267 0.95 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF639-210 - 441 9.1e-16 57.4 55.4 5 9 0.017 30 5.3 0.9 1 23 273 296 273 296 0.88 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF639-210 - 441 9.1e-16 57.4 55.4 6 9 0.0033 6 7.5 0.5 1 23 330 353 330 353 0.94 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF639-210 - 441 9.1e-16 57.4 55.4 7 9 1.5e-05 0.027 14.9 2.9 1 23 359 381 359 381 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF639-210 - 441 9.1e-16 57.4 55.4 8 9 0.0037 6.7 7.4 0.3 1 22 387 408 387 410 0.88 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF639-210 - 441 9.1e-16 57.4 55.4 9 9 0.00083 1.5 9.4 0.4 1 20 416 435 416 438 0.93 Zinc finger, C2H2 type zf-H2C2_5 PF13909.6 26 ZNF639-210 - 441 5.5e-13 48.4 32.8 1 6 9.3e-07 0.0017 18.1 2.7 1 25 160 184 160 185 0.95 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 ZNF639-210 - 441 5.5e-13 48.4 32.8 2 6 1.8e-07 0.00033 20.4 0.3 3 24 218 239 216 240 0.94 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 ZNF639-210 - 441 5.5e-13 48.4 32.8 3 6 0.077 1.4e+02 2.4 1.1 1 7 245 251 245 268 0.69 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 ZNF639-210 - 441 5.5e-13 48.4 32.8 4 6 0.059 1.1e+02 2.7 0.4 2 22 274 294 273 297 0.86 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 ZNF639-210 - 441 5.5e-13 48.4 32.8 5 6 0.01 18 5.2 0.2 3 25 332 354 330 355 0.88 C2H2-type zinc-finger domain zf-H2C2_5 PF13909.6 26 ZNF639-210 - 441 5.5e-13 48.4 32.8 6 6 7.2e-07 0.0013 18.4 0.2 2 25 388 411 387 412 0.93 C2H2-type zinc-finger domain zf-C2H2_4 PF13894.6 24 ZNF639-210 - 441 7.9e-13 48.1 56.9 1 9 0.00014 0.25 12.3 1.4 1 24 160 183 160 183 0.90 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF639-210 - 441 7.9e-13 48.1 56.9 2 9 0.00015 0.26 12.2 0.2 2 23 190 211 189 212 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF639-210 - 441 7.9e-13 48.1 56.9 3 9 0.014 26 6.0 0.2 1 22 216 237 216 239 0.69 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF639-210 - 441 7.9e-13 48.1 56.9 4 9 2.4e-05 0.043 14.7 0.9 1 23 245 267 245 268 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF639-210 - 441 7.9e-13 48.1 56.9 5 9 0.016 28 5.9 1.1 1 24 273 296 273 296 0.90 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF639-210 - 441 7.9e-13 48.1 56.9 6 9 0.0083 15 6.8 0.6 1 24 330 353 330 353 0.84 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF639-210 - 441 7.9e-13 48.1 56.9 7 9 3.2e-05 0.057 14.3 2.4 1 23 359 381 359 382 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF639-210 - 441 7.9e-13 48.1 56.9 8 9 0.041 74 4.6 0.3 1 24 387 410 387 410 0.69 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF639-210 - 441 7.9e-13 48.1 56.9 9 9 0.0037 6.5 7.9 0.4 1 23 416 438 416 439 0.91 C2H2-type zinc finger zf-H2C2_2 PF13465.6 26 ZNF639-210 - 441 2.1e-11 43.7 47.7 1 9 0.086 1.5e+02 3.0 0.5 15 25 160 170 155 172 0.80 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF639-210 - 441 2.1e-11 43.7 47.7 2 9 0.0091 16 6.1 0.4 1 26 174 200 174 200 0.87 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF639-210 - 441 2.1e-11 43.7 47.7 3 9 0.0016 2.9 8.5 0.6 5 24 207 225 204 226 0.83 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF639-210 - 441 2.1e-11 43.7 47.7 4 9 0.0017 3.1 8.4 0.1 1 25 230 255 230 256 0.90 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF639-210 - 441 2.1e-11 43.7 47.7 5 9 0.7 1.3e+03 0.1 2.6 2 21 260 279 259 283 0.82 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF639-210 - 441 2.1e-11 43.7 47.7 6 9 1 1.8e+03 -0.4 1.1 12 22 327 337 326 339 0.83 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF639-210 - 441 2.1e-11 43.7 47.7 7 9 4e-08 7.3e-05 23.0 0.1 1 26 344 370 344 370 0.90 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF639-210 - 441 2.1e-11 43.7 47.7 8 9 0.00011 0.2 12.2 0.1 4 25 376 397 376 398 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF639-210 - 441 2.1e-11 43.7 47.7 9 9 0.00033 0.59 10.7 0.2 2 26 402 427 401 427 0.87 Zinc-finger double domain # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF639-210.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF639-210.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF639-210.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF639-210.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF639-210.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:11:27 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-C2H2 PF00096.26 23 ZNF641-201 - 438 3.1e-17 62.0 56.8 1 5 2.1e-05 0.02 15.3 1.9 1 23 264 286 264 286 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF641-201 - 438 3.1e-17 62.0 56.8 2 5 3.5e-06 0.0033 17.8 6.3 1 23 292 314 292 314 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF641-201 - 438 3.1e-17 62.0 56.8 3 5 1.8e-05 0.017 15.6 4.9 2 23 321 342 320 342 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF641-201 - 438 3.1e-17 62.0 56.8 4 5 1.8e-06 0.0017 18.7 7.4 1 23 372 394 371 394 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF641-201 - 438 3.1e-17 62.0 56.8 5 5 1.4e-06 0.0013 19.1 4.9 1 23 400 422 400 422 0.98 Zinc finger, C2H2 type KRAB PF01352.27 42 ZNF641-201 - 438 1.9e-16 59.4 0.0 1 1 3.6e-19 3.4e-16 58.6 0.0 1 42 108 150 108 150 0.98 KRAB box zf-H2C2_2 PF13465.6 26 ZNF641-201 - 438 3.2e-16 58.9 47.8 1 6 0.0004 0.38 11.3 0.2 13 25 262 274 261 274 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF641-201 - 438 3.2e-16 58.9 47.8 2 6 1.7e-09 1.6e-06 28.2 1.8 1 25 278 302 278 303 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF641-201 - 438 3.2e-16 58.9 47.8 3 6 0.015 14 6.3 5.8 1 25 306 330 306 331 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF641-201 - 438 3.2e-16 58.9 47.8 4 6 0.16 1.5e+02 3.1 5.0 13 25 356 382 334 383 0.56 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF641-201 - 438 3.2e-16 58.9 47.8 5 6 7.1e-10 6.7e-07 29.5 1.3 1 25 386 410 386 411 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF641-201 - 438 3.2e-16 58.9 47.8 6 6 0.075 70 4.1 0.4 1 14 414 427 414 429 0.92 Zinc-finger double domain zf-C2H2_4 PF13894.6 24 ZNF641-201 - 438 1.1e-12 47.6 49.5 1 5 0.00046 0.44 11.5 2.1 1 23 264 286 264 287 0.86 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF641-201 - 438 1.1e-12 47.6 49.5 2 5 0.00021 0.2 12.6 4.4 1 23 292 314 292 315 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF641-201 - 438 1.1e-12 47.6 49.5 3 5 0.0001 0.094 13.6 3.6 2 23 321 342 320 343 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF641-201 - 438 1.1e-12 47.6 49.5 4 5 1.3e-05 0.012 16.3 4.4 1 23 372 394 372 395 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF641-201 - 438 1.1e-12 47.6 49.5 5 5 3.9e-06 0.0036 18.0 3.8 1 23 400 422 400 423 0.97 C2H2-type zinc finger # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF641-201.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF641-201.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF641-201.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF641-201.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF641-201.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:11:27 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-C2H2 PF00096.26 23 ZNF641-202 - 415 2.2e-17 62.4 56.8 1 5 2.1e-05 0.019 15.4 1.9 1 23 241 263 241 263 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF641-202 - 415 2.2e-17 62.4 56.8 2 5 3.4e-06 0.0031 17.9 6.3 1 23 269 291 269 291 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF641-202 - 415 2.2e-17 62.4 56.8 3 5 1.7e-05 0.016 15.7 4.9 2 23 298 319 297 319 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF641-202 - 415 2.2e-17 62.4 56.8 4 5 1.7e-06 0.0016 18.8 7.4 1 23 349 371 348 371 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF641-202 - 415 2.2e-17 62.4 56.8 5 5 1.4e-06 0.0012 19.1 4.9 1 23 377 399 377 399 0.98 Zinc finger, C2H2 type zf-H2C2_2 PF13465.6 26 ZNF641-202 - 415 2.3e-16 59.4 48.0 1 6 0.0004 0.36 11.3 0.2 13 25 239 251 238 251 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF641-202 - 415 2.3e-16 59.4 48.0 2 6 1.7e-09 1.5e-06 28.3 1.8 1 25 255 279 255 280 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF641-202 - 415 2.3e-16 59.4 48.0 3 6 0.015 13 6.4 5.8 1 25 283 307 283 308 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF641-202 - 415 2.3e-16 59.4 48.0 4 6 0.18 1.6e+02 3.0 5.2 13 25 333 359 311 360 0.56 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF641-202 - 415 2.3e-16 59.4 48.0 5 6 7e-10 6.3e-07 29.6 1.3 1 25 363 387 363 388 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF641-202 - 415 2.3e-16 59.4 48.0 6 6 0.074 66 4.2 0.4 1 14 391 404 391 406 0.92 Zinc-finger double domain zf-C2H2_4 PF13894.6 24 ZNF641-202 - 415 7.8e-13 48.1 49.5 1 5 0.00045 0.41 11.6 2.1 1 23 241 263 241 264 0.86 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF641-202 - 415 7.8e-13 48.1 49.5 2 5 0.00021 0.18 12.7 4.4 1 23 269 291 269 292 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF641-202 - 415 7.8e-13 48.1 49.5 3 5 9.9e-05 0.088 13.7 3.6 2 23 298 319 297 320 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF641-202 - 415 7.8e-13 48.1 49.5 4 5 1.3e-05 0.012 16.4 4.4 1 23 349 371 349 372 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF641-202 - 415 7.8e-13 48.1 49.5 5 5 3.8e-06 0.0034 18.1 3.8 1 23 377 399 377 400 0.97 C2H2-type zinc finger # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF641-202.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF641-202.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF641-202.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF641-202.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF641-202.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:11:27 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-C2H2 PF00096.26 23 ZNF641-203 - 438 3.1e-17 62.0 56.8 1 5 2.1e-05 0.02 15.3 1.9 1 23 264 286 264 286 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF641-203 - 438 3.1e-17 62.0 56.8 2 5 3.5e-06 0.0033 17.8 6.3 1 23 292 314 292 314 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF641-203 - 438 3.1e-17 62.0 56.8 3 5 1.8e-05 0.017 15.6 4.9 2 23 321 342 320 342 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF641-203 - 438 3.1e-17 62.0 56.8 4 5 1.8e-06 0.0017 18.7 7.4 1 23 372 394 371 394 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF641-203 - 438 3.1e-17 62.0 56.8 5 5 1.4e-06 0.0013 19.1 4.9 1 23 400 422 400 422 0.98 Zinc finger, C2H2 type KRAB PF01352.27 42 ZNF641-203 - 438 1.9e-16 59.4 0.0 1 1 3.6e-19 3.4e-16 58.6 0.0 1 42 108 150 108 150 0.98 KRAB box zf-H2C2_2 PF13465.6 26 ZNF641-203 - 438 3.2e-16 58.9 47.8 1 6 0.0004 0.38 11.3 0.2 13 25 262 274 261 274 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF641-203 - 438 3.2e-16 58.9 47.8 2 6 1.7e-09 1.6e-06 28.2 1.8 1 25 278 302 278 303 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF641-203 - 438 3.2e-16 58.9 47.8 3 6 0.015 14 6.3 5.8 1 25 306 330 306 331 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF641-203 - 438 3.2e-16 58.9 47.8 4 6 0.16 1.5e+02 3.1 5.0 13 25 356 382 334 383 0.56 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF641-203 - 438 3.2e-16 58.9 47.8 5 6 7.1e-10 6.7e-07 29.5 1.3 1 25 386 410 386 411 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF641-203 - 438 3.2e-16 58.9 47.8 6 6 0.075 70 4.1 0.4 1 14 414 427 414 429 0.92 Zinc-finger double domain zf-C2H2_4 PF13894.6 24 ZNF641-203 - 438 1.1e-12 47.6 49.5 1 5 0.00046 0.44 11.5 2.1 1 23 264 286 264 287 0.86 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF641-203 - 438 1.1e-12 47.6 49.5 2 5 0.00021 0.2 12.6 4.4 1 23 292 314 292 315 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF641-203 - 438 1.1e-12 47.6 49.5 3 5 0.0001 0.094 13.6 3.6 2 23 321 342 320 343 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF641-203 - 438 1.1e-12 47.6 49.5 4 5 1.3e-05 0.012 16.3 4.4 1 23 372 394 372 395 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF641-203 - 438 1.1e-12 47.6 49.5 5 5 3.9e-06 0.0036 18.0 3.8 1 23 400 422 400 423 0.97 C2H2-type zinc finger # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF641-203.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF641-203.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF641-203.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF641-203.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF641-203.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:11:28 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF641-204.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF641-204.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF641-204.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF641-204.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF641-204.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:11:28 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-C2H2 PF00096.26 23 ZNF641-205 - 424 2.6e-17 62.2 56.8 1 5 2.1e-05 0.019 15.4 1.9 1 23 250 272 250 272 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF641-205 - 424 2.6e-17 62.2 56.8 2 5 3.5e-06 0.0031 17.9 6.3 1 23 278 300 278 300 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF641-205 - 424 2.6e-17 62.2 56.8 3 5 1.8e-05 0.016 15.6 4.9 2 23 307 328 306 328 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF641-205 - 424 2.6e-17 62.2 56.8 4 5 1.8e-06 0.0016 18.8 7.4 1 23 358 380 357 380 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF641-205 - 424 2.6e-17 62.2 56.8 5 5 1.4e-06 0.0013 19.1 4.9 1 23 386 408 386 408 0.98 Zinc finger, C2H2 type KRAB PF01352.27 42 ZNF641-205 - 424 1.8e-16 59.5 0.0 1 1 3.6e-19 3.2e-16 58.7 0.0 1 42 94 136 94 136 0.98 KRAB box zf-H2C2_2 PF13465.6 26 ZNF641-205 - 424 3e-16 59.0 48.1 1 6 0.00041 0.37 11.3 0.2 13 25 248 260 247 260 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF641-205 - 424 3e-16 59.0 48.1 2 6 1.8e-09 1.6e-06 28.3 1.8 1 25 264 288 264 289 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF641-205 - 424 3e-16 59.0 48.1 3 6 0.015 14 6.4 5.8 1 25 292 316 292 317 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF641-205 - 424 3e-16 59.0 48.1 4 6 0.2 1.8e+02 2.8 5.3 13 25 342 368 320 369 0.56 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF641-205 - 424 3e-16 59.0 48.1 5 6 7.2e-10 6.4e-07 29.5 1.3 1 25 372 396 372 397 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF641-205 - 424 3e-16 59.0 48.1 6 6 0.076 68 4.1 0.4 1 14 400 413 400 415 0.92 Zinc-finger double domain zf-C2H2_4 PF13894.6 24 ZNF641-205 - 424 9e-13 47.9 49.5 1 5 0.00047 0.42 11.6 2.1 1 23 250 272 250 273 0.86 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF641-205 - 424 9e-13 47.9 49.5 2 5 0.00021 0.19 12.7 4.4 1 23 278 300 278 301 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF641-205 - 424 9e-13 47.9 49.5 3 5 0.0001 0.091 13.7 3.6 2 23 307 328 306 329 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF641-205 - 424 9e-13 47.9 49.5 4 5 1.3e-05 0.012 16.4 4.4 1 23 358 380 358 381 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF641-205 - 424 9e-13 47.9 49.5 5 5 3.9e-06 0.0035 18.1 3.8 1 23 386 408 386 409 0.97 C2H2-type zinc finger # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF641-205.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF641-205.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF641-205.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF641-205.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF641-205.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:11:29 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF641-206.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF641-206.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF641-206.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF641-206.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF641-206.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:11:29 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF641-207.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF641-207.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF641-207.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF641-207.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF641-207.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:11:29 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF641-208.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF641-208.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF641-208.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF641-208.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF641-208.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:11:30 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF641-209.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF641-209.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF641-209.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF641-209.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF641-209.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:11:30 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF641-210.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF641-210.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF641-210.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF641-210.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF641-210.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:11:30 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-C2H2_4 PF13894.6 24 ZNF644-201 - 1327 5e-17 61.1 47.6 1 8 5.9e-05 0.15 13.0 4.4 1 23 410 432 410 433 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF644-201 - 1327 5e-17 61.1 47.6 2 8 3.7e-07 0.00094 19.8 0.3 1 23 448 470 448 471 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF644-201 - 1327 5e-17 61.1 47.6 3 8 0.0016 4 8.5 1.0 2 23 497 518 496 519 0.88 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF644-201 - 1327 5e-17 61.1 47.6 4 8 0.4 1e+03 1.0 1.3 1 20 525 544 525 548 0.77 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF644-201 - 1327 5e-17 61.1 47.6 5 8 0.0049 13 7.0 0.9 1 24 586 609 586 609 0.82 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF644-201 - 1327 5e-17 61.1 47.6 6 8 6.5e-06 0.017 15.9 0.1 2 23 964 985 963 986 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF644-201 - 1327 5e-17 61.1 47.6 7 8 5.7e-06 0.015 16.1 0.2 1 23 1038 1060 1038 1061 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF644-201 - 1327 5e-17 61.1 47.6 8 8 0.0075 19 6.4 0.1 2 23 1262 1287 1261 1288 0.92 C2H2-type zinc finger # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF644-201.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF644-201.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF644-201.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF644-201.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF644-201.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:11:31 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF644-202.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF644-202.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF644-202.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF644-202.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF644-202.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:11:31 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF644-203.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF644-203.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF644-203.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF644-203.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF644-203.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:11:31 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-C2H2_4 PF13894.6 24 ZNF644-204 - 1327 5e-17 61.1 47.6 1 8 5.9e-05 0.15 13.0 4.4 1 23 410 432 410 433 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF644-204 - 1327 5e-17 61.1 47.6 2 8 3.7e-07 0.00094 19.8 0.3 1 23 448 470 448 471 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF644-204 - 1327 5e-17 61.1 47.6 3 8 0.0016 4 8.5 1.0 2 23 497 518 496 519 0.88 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF644-204 - 1327 5e-17 61.1 47.6 4 8 0.4 1e+03 1.0 1.3 1 20 525 544 525 548 0.77 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF644-204 - 1327 5e-17 61.1 47.6 5 8 0.0049 13 7.0 0.9 1 24 586 609 586 609 0.82 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF644-204 - 1327 5e-17 61.1 47.6 6 8 6.5e-06 0.017 15.9 0.1 2 23 964 985 963 986 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF644-204 - 1327 5e-17 61.1 47.6 7 8 5.7e-06 0.015 16.1 0.2 1 23 1038 1060 1038 1061 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF644-204 - 1327 5e-17 61.1 47.6 8 8 0.0075 19 6.4 0.1 2 23 1262 1287 1261 1288 0.92 C2H2-type zinc finger # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF644-204.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF644-204.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF644-204.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF644-204.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF644-204.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:11:32 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF644-205.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF644-205.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF644-205.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF644-205.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF644-205.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:11:32 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF644-206.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF644-206.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF644-206.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF644-206.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF644-206.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:11:32 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF644-207.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF644-207.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF644-207.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF644-207.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF644-207.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:11:33 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF644-208.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF644-208.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF644-208.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF644-208.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF644-208.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:11:33 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF644-209.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF644-209.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF644-209.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF644-209.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF644-209.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:11:34 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF644-210.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF644-210.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF644-210.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF644-210.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF644-210.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:11:34 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF644-211.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF644-211.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF644-211.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF644-211.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF644-211.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:11:34 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-C2H2_4 PF13894.6 24 ZNF644-212 - 650 5.8e-16 57.8 31.0 1 6 2.5e-07 0.00041 20.9 0.3 1 23 20 42 20 43 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF644-212 - 650 5.8e-16 57.8 31.0 2 6 0.0011 1.8 9.6 1.0 2 23 69 90 68 91 0.88 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF644-212 - 650 5.8e-16 57.8 31.0 3 6 0.28 4.6e+02 2.1 1.3 1 20 97 116 97 120 0.77 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF644-212 - 650 5.8e-16 57.8 31.0 4 6 0.0034 5.6 8.1 0.9 1 24 158 181 158 181 0.82 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF644-212 - 650 5.8e-16 57.8 31.0 5 6 4.5e-06 0.0073 17.1 0.1 2 23 536 557 535 558 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF644-212 - 650 5.8e-16 57.8 31.0 6 6 4e-06 0.0065 17.2 0.2 1 23 610 632 610 633 0.94 C2H2-type zinc finger zf-C2H2 PF00096.26 23 ZNF644-212 - 650 1.3e-07 31.7 34.0 1 7 9.3e-08 0.00015 22.0 0.5 1 23 20 42 20 42 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF644-212 - 650 1.3e-07 31.7 34.0 2 7 0.36 5.9e+02 1.2 1.5 2 20 69 87 68 90 0.48 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF644-212 - 650 1.3e-07 31.7 34.0 3 7 0.84 1.4e+03 0.1 1.5 1 19 97 115 96 120 0.73 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF644-212 - 650 1.3e-07 31.7 34.0 4 7 0.00027 0.45 11.1 0.9 1 23 158 181 158 181 0.93 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF644-212 - 650 1.3e-07 31.7 34.0 5 7 1.9 3.2e+03 -1.0 0.0 11 21 367 377 366 378 0.88 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF644-212 - 650 1.3e-07 31.7 34.0 6 7 0.00047 0.77 10.3 0.0 3 23 537 557 536 557 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF644-212 - 650 1.3e-07 31.7 34.0 7 7 0.022 36 5.1 0.2 1 23 610 632 610 632 0.95 Zinc finger, C2H2 type # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF644-212.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF644-212.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF644-212.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF644-212.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF644-212.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:11:35 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZNF649-201 - 505 3e-67 220.3 67.4 1 11 3e-06 0.0049 17.2 1.2 4 25 167 188 165 189 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF649-201 - 505 3e-67 220.3 67.4 2 11 2.3e-10 3.8e-07 30.2 2.3 2 24 193 215 192 217 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF649-201 - 505 3e-67 220.3 67.4 3 11 2.1e-07 0.00034 20.9 1.5 2 24 221 243 220 245 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF649-201 - 505 3e-67 220.3 67.4 4 11 9.6e-08 0.00016 22.0 0.7 2 24 249 271 248 273 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF649-201 - 505 3e-67 220.3 67.4 5 11 4.5e-10 7.3e-07 29.3 0.3 2 25 277 300 276 301 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF649-201 - 505 3e-67 220.3 67.4 6 11 6.7e-11 1.1e-07 31.9 0.5 2 24 305 327 305 329 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF649-201 - 505 3e-67 220.3 67.4 7 11 3.9e-10 6.4e-07 29.5 0.1 1 25 332 356 332 357 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF649-201 - 505 3e-67 220.3 67.4 8 11 6e-09 9.8e-06 25.8 0.3 2 21 361 380 361 381 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF649-201 - 505 3e-67 220.3 67.4 9 11 1.6e-11 2.7e-08 33.9 0.2 2 26 389 413 388 413 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF649-201 - 505 3e-67 220.3 67.4 10 11 4.7e-07 0.00076 19.8 1.0 4 24 419 439 416 441 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF649-201 - 505 3e-67 220.3 67.4 11 11 0.094 1.5e+02 3.0 0.3 2 13 445 456 445 462 0.90 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZNF649-201 - 505 4.1e-46 152.9 77.6 1 11 0.017 28 5.4 0.5 8 23 157 172 156 172 0.90 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF649-201 - 505 4.1e-46 152.9 77.6 2 11 2.3e-06 0.0037 17.6 1.5 1 23 178 200 178 200 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF649-201 - 505 4.1e-46 152.9 77.6 3 11 1.3e-05 0.021 15.3 1.7 1 23 206 228 206 228 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF649-201 - 505 4.1e-46 152.9 77.6 4 11 8.7e-05 0.14 12.7 0.7 3 23 236 256 236 256 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF649-201 - 505 4.1e-46 152.9 77.6 5 11 8.4e-09 1.4e-05 25.3 0.2 3 23 264 284 262 284 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF649-201 - 505 4.1e-46 152.9 77.6 6 11 7.3e-10 1.2e-06 28.6 1.5 1 23 290 312 290 312 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF649-201 - 505 4.1e-46 152.9 77.6 7 11 1.1e-08 1.8e-05 25.0 0.8 1 23 318 340 318 340 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF649-201 - 505 4.1e-46 152.9 77.6 8 11 8.4e-07 0.0014 19.0 0.6 5 23 350 368 346 368 0.94 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF649-201 - 505 4.1e-46 152.9 77.6 9 11 3.9e-08 6.4e-05 23.2 0.4 1 23 374 396 374 396 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF649-201 - 505 4.1e-46 152.9 77.6 10 11 1.2e-07 0.0002 21.6 2.1 1 23 402 424 402 424 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF649-201 - 505 4.1e-46 152.9 77.6 11 11 0.00064 1 9.9 1.5 3 23 432 452 430 452 0.97 Zinc finger, C2H2 type KRAB PF01352.27 42 ZNF649-201 - 505 5.5e-25 86.7 0.9 1 1 5.8e-28 9.5e-25 86.0 0.9 1 42 7 48 7 48 0.98 KRAB box zf-C2H2_4 PF13894.6 24 ZNF649-201 - 505 1.9e-24 84.2 77.8 1 11 0.21 3.4e+02 2.5 0.2 11 23 160 172 156 173 0.87 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF649-201 - 505 1.9e-24 84.2 77.8 2 11 0.00014 0.22 12.4 1.2 1 23 178 200 178 201 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF649-201 - 505 1.9e-24 84.2 77.8 3 11 0.00019 0.31 12.0 1.8 1 23 206 228 206 229 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF649-201 - 505 1.9e-24 84.2 77.8 4 11 0.00068 1.1 10.3 1.4 3 23 236 256 234 257 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF649-201 - 505 1.9e-24 84.2 77.8 5 11 3.5e-05 0.057 14.3 0.2 2 23 263 284 262 285 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF649-201 - 505 1.9e-24 84.2 77.8 6 11 5.5e-06 0.009 16.8 1.6 1 23 290 312 290 313 0.91 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF649-201 - 505 1.9e-24 84.2 77.8 7 11 4e-05 0.066 14.1 0.5 1 23 318 340 318 341 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF649-201 - 505 1.9e-24 84.2 77.8 8 11 0.00027 0.44 11.5 1.0 2 23 347 368 346 369 0.90 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF649-201 - 505 1.9e-24 84.2 77.8 9 11 3.8e-06 0.0063 17.3 0.7 1 23 374 396 374 397 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF649-201 - 505 1.9e-24 84.2 77.8 10 11 4.9e-06 0.008 16.9 1.3 1 23 402 424 402 425 0.97 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF649-201 - 505 1.9e-24 84.2 77.8 11 11 0.009 15 6.8 1.8 2 23 431 452 430 453 0.91 C2H2-type zinc finger # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF649-201.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF649-201.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF649-201.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF649-201.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF649-201.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:11:35 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF649-202.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF649-202.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF649-202.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF649-202.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF649-202.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:11:35 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF649-203.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF649-203.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF649-203.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF649-203.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF649-203.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:11:36 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF649-204.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF649-204.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF649-204.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF649-204.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF649-204.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:11:36 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF649-205.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF649-205.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF649-205.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF649-205.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF649-205.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:11:36 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF649-206.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF649-206.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF649-206.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF649-206.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF649-206.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:11:37 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZNF649-207 - 477 8.4e-63 206.2 58.6 1 10 3.3e-06 0.0046 17.3 1.2 4 25 167 188 165 189 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF649-207 - 477 8.4e-63 206.2 58.6 2 10 2.6e-10 3.6e-07 30.3 2.3 2 24 193 215 192 217 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF649-207 - 477 8.4e-63 206.2 58.6 3 10 1.1e-07 0.00015 22.1 0.7 2 24 221 243 220 245 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF649-207 - 477 8.4e-63 206.2 58.6 4 10 4.9e-10 6.8e-07 29.4 0.3 2 25 249 272 248 273 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF649-207 - 477 8.4e-63 206.2 58.6 5 10 7.4e-11 1e-07 32.0 0.5 2 24 277 299 277 301 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF649-207 - 477 8.4e-63 206.2 58.6 6 10 4.4e-10 6e-07 29.6 0.1 1 25 304 328 304 329 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF649-207 - 477 8.4e-63 206.2 58.6 7 10 6.7e-09 9.2e-06 25.9 0.3 2 21 333 352 333 353 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF649-207 - 477 8.4e-63 206.2 58.6 8 10 1.8e-11 2.5e-08 34.0 0.2 2 26 361 385 360 385 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF649-207 - 477 8.4e-63 206.2 58.6 9 10 5.2e-07 0.00071 19.9 1.0 4 24 391 411 388 413 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF649-207 - 477 8.4e-63 206.2 58.6 10 10 0.1 1.4e+02 3.1 0.3 2 13 417 428 417 434 0.90 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZNF649-207 - 477 8.8e-44 145.6 70.3 1 10 0.019 26 5.5 0.5 8 23 157 172 156 172 0.90 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF649-207 - 477 8.8e-44 145.6 70.3 2 10 2.5e-06 0.0035 17.7 1.5 1 23 178 200 178 200 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF649-207 - 477 8.8e-44 145.6 70.3 3 10 2.3e-05 0.031 14.7 1.7 1 23 206 228 206 228 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF649-207 - 477 8.8e-44 145.6 70.3 4 10 9.2e-09 1.3e-05 25.4 0.2 3 23 236 256 234 256 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF649-207 - 477 8.8e-44 145.6 70.3 5 10 8.1e-10 1.1e-06 28.7 1.5 1 23 262 284 262 284 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF649-207 - 477 8.8e-44 145.6 70.3 6 10 1.2e-08 1.6e-05 25.1 0.8 1 23 290 312 290 312 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF649-207 - 477 8.8e-44 145.6 70.3 7 10 9.2e-07 0.0013 19.1 0.6 5 23 322 340 318 340 0.94 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF649-207 - 477 8.8e-44 145.6 70.3 8 10 4.3e-08 6e-05 23.3 0.4 1 23 346 368 346 368 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF649-207 - 477 8.8e-44 145.6 70.3 9 10 1.4e-07 0.00019 21.7 2.1 1 23 374 396 374 396 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF649-207 - 477 8.8e-44 145.6 70.3 10 10 0.00071 0.98 10.0 1.5 3 23 404 424 402 424 0.97 Zinc finger, C2H2 type KRAB PF01352.27 42 ZNF649-207 - 477 5.2e-25 86.8 0.9 1 1 6.4e-28 8.8e-25 86.1 0.9 1 42 7 48 7 48 0.98 KRAB box zf-C2H2_4 PF13894.6 24 ZNF649-207 - 477 4.2e-23 80.0 69.1 1 10 0.23 3.2e+02 2.6 0.2 11 23 160 172 156 173 0.87 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF649-207 - 477 4.2e-23 80.0 69.1 2 10 0.00015 0.21 12.5 1.2 1 23 178 200 178 201 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF649-207 - 477 4.2e-23 80.0 69.1 3 10 0.00037 0.51 11.3 1.8 1 23 206 228 206 229 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF649-207 - 477 4.2e-23 80.0 69.1 4 10 3.8e-05 0.053 14.4 0.2 2 23 235 256 234 257 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF649-207 - 477 4.2e-23 80.0 69.1 5 10 6.1e-06 0.0083 16.9 1.6 1 23 262 284 262 285 0.91 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF649-207 - 477 4.2e-23 80.0 69.1 6 10 4.4e-05 0.061 14.2 0.5 1 23 290 312 290 313 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF649-207 - 477 4.2e-23 80.0 69.1 7 10 0.00029 0.41 11.6 1.0 2 23 319 340 318 341 0.90 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF649-207 - 477 4.2e-23 80.0 69.1 8 10 4.2e-06 0.0058 17.4 0.7 1 23 346 368 346 369 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF649-207 - 477 4.2e-23 80.0 69.1 9 10 5.4e-06 0.0074 17.0 1.3 1 23 374 396 374 397 0.97 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF649-207 - 477 4.2e-23 80.0 69.1 10 10 0.0099 14 6.9 1.8 2 23 403 424 402 425 0.91 C2H2-type zinc finger # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF649-207.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF649-207.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF649-207.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF649-207.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF649-207.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:11:37 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-C2H2 PF00096.26 23 ZNF652-201 - 606 6e-36 120.9 61.7 1 9 1.4e-07 0.00014 22.1 0.5 2 23 246 268 245 268 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF652-201 - 606 6e-36 120.9 61.7 2 9 0.00046 0.46 11.0 0.1 3 22 274 293 273 293 0.94 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF652-201 - 606 6e-36 120.9 61.7 3 9 2.3e-05 0.023 15.2 0.8 2 23 300 322 299 322 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF652-201 - 606 6e-36 120.9 61.7 4 9 4.3e-05 0.043 14.3 1.6 1 23 329 351 329 351 0.94 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF652-201 - 606 6e-36 120.9 61.7 5 9 2.3e-07 0.00023 21.4 1.6 1 23 357 379 357 379 0.94 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF652-201 - 606 6e-36 120.9 61.7 6 9 4.3e-07 0.00043 20.6 2.0 1 23 385 407 385 407 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF652-201 - 606 6e-36 120.9 61.7 7 9 3.5e-05 0.035 14.6 1.4 1 23 413 435 413 435 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF652-201 - 606 6e-36 120.9 61.7 8 9 1.4e-08 1.4e-05 25.3 1.5 1 23 441 463 441 463 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF652-201 - 606 6e-36 120.9 61.7 9 9 2.1e-05 0.021 15.3 0.3 1 20 469 488 469 490 0.94 Zinc finger, C2H2 type zf-H2C2_2 PF13465.6 26 ZNF652-201 - 606 8e-28 95.6 68.6 1 9 0.074 74 4.0 2.1 13 26 242 256 236 256 0.84 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF652-201 - 606 8e-28 95.6 68.6 2 9 0.048 48 4.6 2.1 2 25 260 282 259 282 0.78 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF652-201 - 606 8e-28 95.6 68.6 3 9 0.012 12 6.5 1.4 12 26 296 310 290 310 0.90 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF652-201 - 606 8e-28 95.6 68.6 4 9 0.0019 1.9 9.0 2.1 4 24 316 338 313 340 0.83 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF652-201 - 606 8e-28 95.6 68.6 5 9 7e-07 0.0007 19.9 2.9 2 26 344 368 343 368 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF652-201 - 606 8e-28 95.6 68.6 6 9 6.4e-07 0.00064 20.0 0.5 2 24 372 394 371 396 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF652-201 - 606 8e-28 95.6 68.6 7 9 6.4e-05 0.063 13.7 0.1 2 25 400 423 399 423 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF652-201 - 606 8e-28 95.6 68.6 8 9 2.6e-09 2.6e-06 27.6 1.0 4 26 430 452 427 452 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF652-201 - 606 8e-28 95.6 68.6 9 9 1.6e-10 1.6e-07 31.5 1.3 1 24 455 478 455 479 0.94 Zinc-finger double domain zf-C2H2_4 PF13894.6 24 ZNF652-201 - 606 4.5e-26 89.3 62.7 1 9 9.6e-05 0.095 13.6 0.5 2 24 246 268 245 268 0.91 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF652-201 - 606 4.5e-26 89.3 62.7 2 9 0.011 11 7.2 0.1 2 22 273 293 272 294 0.89 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF652-201 - 606 4.5e-26 89.3 62.7 3 9 0.00029 0.29 12.1 1.3 2 24 300 322 299 322 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF652-201 - 606 4.5e-26 89.3 62.7 4 9 4.8e-05 0.048 14.5 1.6 1 23 329 351 329 352 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF652-201 - 606 4.5e-26 89.3 62.7 5 9 3.1e-05 0.03 15.1 1.7 1 23 357 379 357 380 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF652-201 - 606 4.5e-26 89.3 62.7 6 9 1.7e-05 0.017 15.9 0.9 1 23 385 407 385 408 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF652-201 - 606 4.5e-26 89.3 62.7 7 9 1.5e-05 0.015 16.1 1.1 1 23 413 435 413 436 0.89 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF652-201 - 606 4.5e-26 89.3 62.7 8 9 1.1e-07 0.00011 22.7 0.8 1 23 441 463 441 464 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF652-201 - 606 4.5e-26 89.3 62.7 9 9 0.00022 0.22 12.4 1.1 1 22 469 490 469 491 0.90 C2H2-type zinc finger zf-met PF12874.7 25 ZNF652-201 - 606 5.9e-11 42.4 46.4 1 9 0.025 25 5.4 0.1 2 21 246 265 245 266 0.93 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF652-201 - 606 5.9e-11 42.4 46.4 2 9 0.028 28 5.3 0.7 2 20 300 318 299 320 0.86 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF652-201 - 606 5.9e-11 42.4 46.4 3 9 2.1e-05 0.021 15.2 1.2 1 20 329 348 329 352 0.93 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF652-201 - 606 5.9e-11 42.4 46.4 4 9 0.0011 1 9.8 0.8 1 19 357 375 357 379 0.93 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF652-201 - 606 5.9e-11 42.4 46.4 5 9 0.021 21 5.7 1.1 1 21 385 405 385 407 0.92 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF652-201 - 606 5.9e-11 42.4 46.4 6 9 0.047 46 4.6 1.2 1 22 413 434 413 436 0.90 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF652-201 - 606 5.9e-11 42.4 46.4 7 9 2.1e-06 0.0021 18.4 0.1 1 20 441 460 441 464 0.91 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF652-201 - 606 5.9e-11 42.4 46.4 8 9 0.0089 8.9 6.9 0.1 3 19 471 487 469 489 0.92 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF652-201 - 606 5.9e-11 42.4 46.4 9 9 7.3 7.2e+03 -2.4 0.0 12 20 588 596 587 597 0.87 Zinc-finger of C2H2 type zf-C2H2_jaz PF12171.8 27 ZNF652-201 - 606 2.3e-08 34.1 49.6 1 10 0.29 2.9e+02 1.9 0.1 3 22 246 265 244 265 0.88 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF652-201 - 606 2.3e-08 34.1 49.6 2 10 9.1 9.1e+03 -2.9 0.2 4 20 274 290 273 293 0.62 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF652-201 - 606 2.3e-08 34.1 49.6 3 10 0.0067 6.6 7.1 1.4 4 22 301 319 299 319 0.89 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF652-201 - 606 2.3e-08 34.1 49.6 4 10 0.00057 0.57 10.5 1.4 1 21 328 348 328 349 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF652-201 - 606 2.3e-08 34.1 49.6 5 10 5.2e-05 0.052 13.9 0.0 2 20 357 375 356 375 0.95 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF652-201 - 606 2.3e-08 34.1 49.6 6 10 0.012 12 6.3 0.7 2 22 385 405 384 405 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF652-201 - 606 2.3e-08 34.1 49.6 7 10 0.00015 0.15 12.3 3.1 1 24 412 435 412 435 0.97 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF652-201 - 606 2.3e-08 34.1 49.6 8 10 0.00018 0.18 12.1 0.0 2 24 441 463 440 463 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF652-201 - 606 2.3e-08 34.1 49.6 9 10 4 4e+03 -1.7 0.1 3 20 470 487 468 488 0.69 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF652-201 - 606 2.3e-08 34.1 49.6 10 10 5 5e+03 -2.0 0.1 13 24 588 599 587 600 0.85 Zinc-finger double-stranded RNA-binding # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF652-201.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF652-201.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF652-201.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF652-201.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF652-201.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:11:37 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-C2H2 PF00096.26 23 ZNF652-202 - 606 6e-36 120.9 61.7 1 9 1.4e-07 0.00014 22.1 0.5 2 23 246 268 245 268 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF652-202 - 606 6e-36 120.9 61.7 2 9 0.00046 0.46 11.0 0.1 3 22 274 293 273 293 0.94 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF652-202 - 606 6e-36 120.9 61.7 3 9 2.3e-05 0.023 15.2 0.8 2 23 300 322 299 322 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF652-202 - 606 6e-36 120.9 61.7 4 9 4.3e-05 0.043 14.3 1.6 1 23 329 351 329 351 0.94 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF652-202 - 606 6e-36 120.9 61.7 5 9 2.3e-07 0.00023 21.4 1.6 1 23 357 379 357 379 0.94 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF652-202 - 606 6e-36 120.9 61.7 6 9 4.3e-07 0.00043 20.6 2.0 1 23 385 407 385 407 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF652-202 - 606 6e-36 120.9 61.7 7 9 3.5e-05 0.035 14.6 1.4 1 23 413 435 413 435 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF652-202 - 606 6e-36 120.9 61.7 8 9 1.4e-08 1.4e-05 25.3 1.5 1 23 441 463 441 463 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF652-202 - 606 6e-36 120.9 61.7 9 9 2.1e-05 0.021 15.3 0.3 1 20 469 488 469 490 0.94 Zinc finger, C2H2 type zf-H2C2_2 PF13465.6 26 ZNF652-202 - 606 8e-28 95.6 68.6 1 9 0.074 74 4.0 2.1 13 26 242 256 236 256 0.84 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF652-202 - 606 8e-28 95.6 68.6 2 9 0.048 48 4.6 2.1 2 25 260 282 259 282 0.78 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF652-202 - 606 8e-28 95.6 68.6 3 9 0.012 12 6.5 1.4 12 26 296 310 290 310 0.90 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF652-202 - 606 8e-28 95.6 68.6 4 9 0.0019 1.9 9.0 2.1 4 24 316 338 313 340 0.83 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF652-202 - 606 8e-28 95.6 68.6 5 9 7e-07 0.0007 19.9 2.9 2 26 344 368 343 368 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF652-202 - 606 8e-28 95.6 68.6 6 9 6.4e-07 0.00064 20.0 0.5 2 24 372 394 371 396 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF652-202 - 606 8e-28 95.6 68.6 7 9 6.4e-05 0.063 13.7 0.1 2 25 400 423 399 423 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF652-202 - 606 8e-28 95.6 68.6 8 9 2.6e-09 2.6e-06 27.6 1.0 4 26 430 452 427 452 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF652-202 - 606 8e-28 95.6 68.6 9 9 1.6e-10 1.6e-07 31.5 1.3 1 24 455 478 455 479 0.94 Zinc-finger double domain zf-C2H2_4 PF13894.6 24 ZNF652-202 - 606 4.5e-26 89.3 62.7 1 9 9.6e-05 0.095 13.6 0.5 2 24 246 268 245 268 0.91 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF652-202 - 606 4.5e-26 89.3 62.7 2 9 0.011 11 7.2 0.1 2 22 273 293 272 294 0.89 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF652-202 - 606 4.5e-26 89.3 62.7 3 9 0.00029 0.29 12.1 1.3 2 24 300 322 299 322 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF652-202 - 606 4.5e-26 89.3 62.7 4 9 4.8e-05 0.048 14.5 1.6 1 23 329 351 329 352 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF652-202 - 606 4.5e-26 89.3 62.7 5 9 3.1e-05 0.03 15.1 1.7 1 23 357 379 357 380 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF652-202 - 606 4.5e-26 89.3 62.7 6 9 1.7e-05 0.017 15.9 0.9 1 23 385 407 385 408 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF652-202 - 606 4.5e-26 89.3 62.7 7 9 1.5e-05 0.015 16.1 1.1 1 23 413 435 413 436 0.89 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF652-202 - 606 4.5e-26 89.3 62.7 8 9 1.1e-07 0.00011 22.7 0.8 1 23 441 463 441 464 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF652-202 - 606 4.5e-26 89.3 62.7 9 9 0.00022 0.22 12.4 1.1 1 22 469 490 469 491 0.90 C2H2-type zinc finger zf-met PF12874.7 25 ZNF652-202 - 606 5.9e-11 42.4 46.4 1 9 0.025 25 5.4 0.1 2 21 246 265 245 266 0.93 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF652-202 - 606 5.9e-11 42.4 46.4 2 9 0.028 28 5.3 0.7 2 20 300 318 299 320 0.86 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF652-202 - 606 5.9e-11 42.4 46.4 3 9 2.1e-05 0.021 15.2 1.2 1 20 329 348 329 352 0.93 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF652-202 - 606 5.9e-11 42.4 46.4 4 9 0.0011 1 9.8 0.8 1 19 357 375 357 379 0.93 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF652-202 - 606 5.9e-11 42.4 46.4 5 9 0.021 21 5.7 1.1 1 21 385 405 385 407 0.92 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF652-202 - 606 5.9e-11 42.4 46.4 6 9 0.047 46 4.6 1.2 1 22 413 434 413 436 0.90 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF652-202 - 606 5.9e-11 42.4 46.4 7 9 2.1e-06 0.0021 18.4 0.1 1 20 441 460 441 464 0.91 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF652-202 - 606 5.9e-11 42.4 46.4 8 9 0.0089 8.9 6.9 0.1 3 19 471 487 469 489 0.92 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF652-202 - 606 5.9e-11 42.4 46.4 9 9 7.3 7.2e+03 -2.4 0.0 12 20 588 596 587 597 0.87 Zinc-finger of C2H2 type zf-C2H2_jaz PF12171.8 27 ZNF652-202 - 606 2.3e-08 34.1 49.6 1 10 0.29 2.9e+02 1.9 0.1 3 22 246 265 244 265 0.88 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF652-202 - 606 2.3e-08 34.1 49.6 2 10 9.1 9.1e+03 -2.9 0.2 4 20 274 290 273 293 0.62 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF652-202 - 606 2.3e-08 34.1 49.6 3 10 0.0067 6.6 7.1 1.4 4 22 301 319 299 319 0.89 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF652-202 - 606 2.3e-08 34.1 49.6 4 10 0.00057 0.57 10.5 1.4 1 21 328 348 328 349 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF652-202 - 606 2.3e-08 34.1 49.6 5 10 5.2e-05 0.052 13.9 0.0 2 20 357 375 356 375 0.95 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF652-202 - 606 2.3e-08 34.1 49.6 6 10 0.012 12 6.3 0.7 2 22 385 405 384 405 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF652-202 - 606 2.3e-08 34.1 49.6 7 10 0.00015 0.15 12.3 3.1 1 24 412 435 412 435 0.97 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF652-202 - 606 2.3e-08 34.1 49.6 8 10 0.00018 0.18 12.1 0.0 2 24 441 463 440 463 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF652-202 - 606 2.3e-08 34.1 49.6 9 10 4 4e+03 -1.7 0.1 3 20 470 487 468 488 0.69 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF652-202 - 606 2.3e-08 34.1 49.6 10 10 5 5e+03 -2.0 0.1 13 24 588 599 587 600 0.85 Zinc-finger double-stranded RNA-binding # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF652-202.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF652-202.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF652-202.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF652-202.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF652-202.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:11:38 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZNF652-203 - 426 4e-31 106.0 45.3 1 7 0.0094 5.3 7.7 0.2 15 26 119 130 113 130 0.85 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF652-203 - 426 4e-31 106.0 45.3 2 7 0.0023 1.3 9.6 2.1 4 24 136 158 133 160 0.83 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF652-203 - 426 4e-31 106.0 45.3 3 7 8.1e-07 0.00046 20.5 2.9 2 26 164 188 163 188 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF652-203 - 426 4e-31 106.0 45.3 4 7 7.4e-07 0.00042 20.6 0.5 2 24 192 214 191 216 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF652-203 - 426 4e-31 106.0 45.3 5 7 7.4e-05 0.041 14.3 0.1 2 25 220 243 219 243 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF652-203 - 426 4e-31 106.0 45.3 6 7 3e-09 1.7e-06 28.2 1.0 4 26 250 272 247 272 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF652-203 - 426 4e-31 106.0 45.3 7 7 1.8e-10 1e-07 32.0 1.3 1 24 275 298 275 299 0.94 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZNF652-203 - 426 5.9e-29 98.9 50.3 1 7 3.9e-05 0.022 15.2 0.7 2 23 120 142 119 142 0.95 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF652-203 - 426 5.9e-29 98.9 50.3 2 7 5e-05 0.028 14.9 1.6 1 23 149 171 149 171 0.95 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF652-203 - 426 5.9e-29 98.9 50.3 3 7 2.7e-07 0.00015 22.0 1.6 1 23 177 199 177 199 0.94 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF652-203 - 426 5.9e-29 98.9 50.3 4 7 5e-07 0.00028 21.2 2.0 1 23 205 227 205 227 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF652-203 - 426 5.9e-29 98.9 50.3 5 7 4e-05 0.023 15.2 1.4 1 23 233 255 233 255 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF652-203 - 426 5.9e-29 98.9 50.3 6 7 1.6e-08 9.2e-06 25.8 1.5 1 23 261 283 261 283 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF652-203 - 426 5.9e-29 98.9 50.3 7 7 2.5e-05 0.014 15.8 0.3 1 20 289 308 289 310 0.94 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZNF652-203 - 426 5.8e-23 79.6 51.8 1 7 0.00048 0.27 12.2 1.3 2 24 120 142 119 142 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF652-203 - 426 5.8e-23 79.6 51.8 2 7 5.6e-05 0.031 15.1 1.6 1 23 149 171 149 172 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF652-203 - 426 5.8e-23 79.6 51.8 3 7 3.5e-05 0.02 15.7 1.7 1 23 177 199 177 200 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF652-203 - 426 5.8e-23 79.6 51.8 4 7 2e-05 0.011 16.5 0.9 1 23 205 227 205 228 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF652-203 - 426 5.8e-23 79.6 51.8 5 7 1.7e-05 0.0097 16.7 1.1 1 23 233 255 233 256 0.89 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF652-203 - 426 5.8e-23 79.6 51.8 6 7 1.3e-07 7.1e-05 23.3 0.8 1 23 261 283 261 284 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF652-203 - 426 5.8e-23 79.6 51.8 7 7 0.00026 0.15 13.0 1.1 1 22 289 310 289 311 0.90 C2H2-type zinc finger zf-C2H2_jaz PF12171.8 27 ZNF652-203 - 426 1e-11 44.8 39.6 1 8 0.003 1.7 9.1 1.0 3 22 120 139 119 139 0.87 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF652-203 - 426 1e-11 44.8 39.6 2 8 0.00068 0.38 11.1 1.4 1 21 148 168 148 169 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF652-203 - 426 1e-11 44.8 39.6 3 8 6.1e-05 0.034 14.4 0.0 2 20 177 195 176 195 0.95 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF652-203 - 426 1e-11 44.8 39.6 4 8 0.014 8 6.9 0.7 2 22 205 225 204 225 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF652-203 - 426 1e-11 44.8 39.6 5 8 0.00018 0.1 12.9 3.1 1 24 232 255 232 255 0.97 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF652-203 - 426 1e-11 44.8 39.6 6 8 0.00021 0.12 12.7 0.0 2 24 261 283 260 283 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF652-203 - 426 1e-11 44.8 39.6 7 8 4.8 2.7e+03 -1.2 0.1 3 20 290 307 288 308 0.70 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF652-203 - 426 1e-11 44.8 39.6 8 8 6 3.3e+03 -1.5 0.1 13 24 408 419 407 420 0.85 Zinc-finger double-stranded RNA-binding zf-met PF12874.7 25 ZNF652-203 - 426 2.2e-11 43.7 41.9 1 8 0.034 19 5.8 0.6 2 20 120 138 119 140 0.86 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF652-203 - 426 2.2e-11 43.7 41.9 2 8 2.4e-05 0.014 15.8 1.2 1 20 149 168 149 172 0.93 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF652-203 - 426 2.2e-11 43.7 41.9 3 8 0.0012 0.69 10.4 0.8 1 19 177 195 177 199 0.93 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF652-203 - 426 2.2e-11 43.7 41.9 4 8 0.025 14 6.2 1.1 1 21 205 225 205 227 0.92 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF652-203 - 426 2.2e-11 43.7 41.9 5 8 0.055 31 5.2 1.2 1 22 233 254 233 256 0.90 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF652-203 - 426 2.2e-11 43.7 41.9 6 8 2.5e-06 0.0014 19.0 0.1 1 20 261 280 261 284 0.91 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF652-203 - 426 2.2e-11 43.7 41.9 7 8 0.011 5.9 7.4 0.1 3 19 291 307 289 309 0.92 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF652-203 - 426 2.2e-11 43.7 41.9 8 8 8.7 4.9e+03 -1.8 0.0 12 20 408 416 407 417 0.87 Zinc-finger of C2H2 type zf-C2H2_6 PF13912.6 27 ZNF652-203 - 426 2.9e-08 33.5 45.2 1 7 0.0018 1 9.5 0.7 3 20 120 137 120 142 0.91 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF652-203 - 426 2.9e-08 33.5 45.2 2 7 0.75 4.2e+02 1.1 1.3 2 20 149 167 148 173 0.72 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF652-203 - 426 2.9e-08 33.5 45.2 3 7 0.0044 2.5 8.2 1.5 2 24 177 199 177 202 0.81 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF652-203 - 426 2.9e-08 33.5 45.2 4 7 0.00038 0.21 11.6 1.1 2 24 205 227 205 230 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF652-203 - 426 2.9e-08 33.5 45.2 5 7 0.006 3.4 7.8 0.6 3 24 234 255 233 258 0.92 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF652-203 - 426 2.9e-08 33.5 45.2 6 7 1.2e-05 0.007 16.3 0.2 2 24 261 283 261 286 0.95 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF652-203 - 426 2.9e-08 33.5 45.2 7 7 0.0094 5.3 7.2 1.1 2 23 289 311 289 313 0.76 C2H2-type zinc finger # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF652-203.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF652-203.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF652-203.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF652-203.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF652-203.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:11:39 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF652-204.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF652-204.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF652-204.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF652-204.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF652-204.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:11:39 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-C2H2 PF00096.26 23 ZNF654-201 - 581 2.4e-11 43.4 34.6 1 6 7.2e-07 0.0011 19.3 0.6 1 23 25 47 25 47 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF654-201 - 581 2.4e-11 43.4 34.6 2 6 7.8e-05 0.12 12.9 0.1 1 23 199 224 199 224 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF654-201 - 581 2.4e-11 43.4 34.6 3 6 0.00044 0.66 10.6 3.5 2 23 241 262 241 262 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF654-201 - 581 2.4e-11 43.4 34.6 4 6 0.0011 1.6 9.3 2.7 1 23 268 292 268 292 0.91 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF654-201 - 581 2.4e-11 43.4 34.6 5 6 0.41 6.1e+02 1.2 0.2 2 23 298 321 298 321 0.88 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF654-201 - 581 2.4e-11 43.4 34.6 6 6 0.002 3 8.5 0.1 2 20 545 563 544 565 0.93 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZNF654-201 - 581 1.5e-07 31.7 39.7 1 7 1.7 2.5e+03 -0.2 0.1 6 23 3 19 1 20 0.69 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF654-201 - 581 1.5e-07 31.7 39.7 2 7 2.2e-06 0.0032 18.2 0.4 1 23 25 47 25 48 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF654-201 - 581 1.5e-07 31.7 39.7 3 7 0.0083 12 7.0 0.1 1 24 199 224 199 224 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF654-201 - 581 1.5e-07 31.7 39.7 4 7 2.9e-05 0.044 14.6 2.7 2 23 241 262 241 263 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF654-201 - 581 1.5e-07 31.7 39.7 5 7 0.019 28 5.9 2.6 1 23 268 292 268 293 0.91 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF654-201 - 581 1.5e-07 31.7 39.7 6 7 0.2 2.9e+02 2.7 0.3 3 23 299 321 298 322 0.85 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF654-201 - 581 1.5e-07 31.7 39.7 7 7 0.016 24 6.1 0.2 2 22 545 565 544 567 0.90 C2H2-type zinc finger # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF654-201.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF654-201.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF654-201.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF654-201.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF654-201.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:11:39 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF654-202.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF654-202.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF654-202.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF654-202.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF654-202.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:11:40 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF654-203.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF654-203.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF654-203.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF654-203.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF654-203.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:11:40 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-C2H2 PF00096.26 23 ZNF654-204 - 1128 3.3e-08 33.6 41.7 1 7 0.39 6.4e+02 1.1 0.6 1 10 545 554 545 566 0.74 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF654-204 - 1128 3.3e-08 33.6 41.7 2 7 1.4e-06 0.0023 18.3 0.6 1 23 572 594 572 594 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF654-204 - 1128 3.3e-08 33.6 41.7 3 7 0.00015 0.25 11.9 0.1 1 23 746 771 746 771 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF654-204 - 1128 3.3e-08 33.6 41.7 4 7 0.00086 1.4 9.5 3.5 2 23 788 809 788 809 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF654-204 - 1128 3.3e-08 33.6 41.7 5 7 0.0021 3.5 8.3 2.7 1 23 815 839 815 839 0.91 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF654-204 - 1128 3.3e-08 33.6 41.7 6 7 0.81 1.3e+03 0.2 0.2 2 23 845 868 845 868 0.88 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF654-204 - 1128 3.3e-08 33.6 41.7 7 7 0.0039 6.3 7.5 0.1 2 20 1092 1110 1091 1112 0.93 Zinc finger, C2H2 type # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF654-204.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF654-204.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF654-204.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF654-204.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF654-204.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:11:40 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZNF658-201 - 1059 1.6e-170 546.7 168.2 1 24 0.0049 5.5 7.6 0.7 2 24 368 393 367 395 0.89 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF658-201 - 1059 1.6e-170 546.7 168.2 2 24 6.7e-05 0.075 13.5 0.4 1 24 398 421 398 421 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF658-201 - 1059 1.6e-170 546.7 168.2 3 24 0.0034 3.8 8.1 0.4 11 24 436 449 424 449 0.78 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF658-201 - 1059 1.6e-170 546.7 168.2 4 24 5.5e-05 0.062 13.8 0.8 1 25 454 478 454 479 0.83 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF658-201 - 1059 1.6e-170 546.7 168.2 5 24 8.2e-08 9.2e-05 22.7 0.3 5 25 504 528 502 529 0.83 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF658-201 - 1059 1.6e-170 546.7 168.2 6 24 3.3e-11 3.7e-08 33.4 2.7 1 26 532 557 532 557 0.97 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF658-201 - 1059 1.6e-170 546.7 168.2 7 24 2e-11 2.2e-08 34.1 1.2 1 25 560 584 560 585 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF658-201 - 1059 1.6e-170 546.7 168.2 8 24 1.6e-12 1.8e-09 37.6 0.6 1 26 588 613 588 613 0.97 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF658-201 - 1059 1.6e-170 546.7 168.2 9 24 1.5e-10 1.7e-07 31.3 1.4 1 26 616 641 616 641 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF658-201 - 1059 1.6e-170 546.7 168.2 10 24 1.1e-10 1.2e-07 31.8 0.6 2 25 645 668 645 669 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF658-201 - 1059 1.6e-170 546.7 168.2 11 24 2.2e-11 2.5e-08 34.0 0.8 1 26 672 697 672 697 0.97 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF658-201 - 1059 1.6e-170 546.7 168.2 12 24 3.8e-11 4.3e-08 33.2 1.0 1 26 700 725 700 725 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF658-201 - 1059 1.6e-170 546.7 168.2 13 24 5.4e-10 6.1e-07 29.6 0.2 1 24 728 751 728 753 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF658-201 - 1059 1.6e-170 546.7 168.2 14 24 5e-12 5.6e-09 36.0 1.2 2 25 757 780 756 781 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF658-201 - 1059 1.6e-170 546.7 168.2 15 24 4.5e-11 5e-08 33.0 0.4 2 25 785 808 784 809 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF658-201 - 1059 1.6e-170 546.7 168.2 16 24 5.5e-11 6.2e-08 32.7 0.1 2 25 813 836 812 837 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF658-201 - 1059 1.6e-170 546.7 168.2 17 24 4.4e-10 4.9e-07 29.9 2.2 4 25 843 864 840 865 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF658-201 - 1059 1.6e-170 546.7 168.2 18 24 5.2e-11 5.8e-08 32.8 1.2 1 25 868 892 868 893 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF658-201 - 1059 1.6e-170 546.7 168.2 19 24 1.1e-09 1.2e-06 28.7 0.6 1 25 896 920 896 921 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF658-201 - 1059 1.6e-170 546.7 168.2 20 24 1.1e-09 1.2e-06 28.6 1.0 3 26 926 949 924 949 0.90 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF658-201 - 1059 1.6e-170 546.7 168.2 21 24 5.8e-10 6.5e-07 29.5 0.2 2 25 953 976 952 977 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF658-201 - 1059 1.6e-170 546.7 168.2 22 24 4e-12 4.5e-09 36.3 0.4 1 25 980 1004 980 1005 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF658-201 - 1059 1.6e-170 546.7 168.2 23 24 4e-12 4.5e-09 36.3 0.3 2 26 1009 1033 1008 1033 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF658-201 - 1059 1.6e-170 546.7 168.2 24 24 0.038 43 4.8 0.3 5 17 1041 1053 1036 1055 0.85 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZNF658-201 - 1059 7.3e-115 369.5 186.9 1 28 1.6 1.8e+03 -0.3 0.0 10 22 252 263 243 263 0.82 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF658-201 - 1059 7.3e-115 369.5 186.9 2 28 7.2 8.1e+03 -2.3 0.1 14 23 286 296 278 296 0.65 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF658-201 - 1059 7.3e-115 369.5 186.9 3 28 0.73 8.2e+02 0.8 0.1 5 22 329 346 328 346 0.89 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF658-201 - 1059 7.3e-115 369.5 186.9 4 28 1.1 1.2e+03 0.2 0.1 12 23 364 375 356 375 0.77 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF658-201 - 1059 7.3e-115 369.5 186.9 5 28 0.00058 0.65 10.6 2.1 5 21 388 404 386 406 0.92 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF658-201 - 1059 7.3e-115 369.5 186.9 6 28 1.3 1.4e+03 0.0 0.3 5 15 416 426 415 430 0.86 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF658-201 - 1059 7.3e-115 369.5 186.9 7 28 4.2e-09 4.7e-06 26.8 1.5 1 23 440 462 440 462 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF658-201 - 1059 7.3e-115 369.5 186.9 8 28 0.21 2.4e+02 2.5 0.2 3 13 468 480 467 481 0.86 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF658-201 - 1059 7.3e-115 369.5 186.9 9 28 4.1 4.6e+03 -1.6 0.0 13 21 502 510 496 511 0.80 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF658-201 - 1059 7.3e-115 369.5 186.9 10 28 3.5e-07 0.00039 20.7 1.6 1 23 518 540 518 540 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF658-201 - 1059 7.3e-115 369.5 186.9 11 28 4.5e-07 0.00051 20.4 3.8 1 23 546 568 546 568 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF658-201 - 1059 7.3e-115 369.5 186.9 12 28 6.4e-10 7.2e-07 29.3 0.4 1 23 574 596 574 596 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF658-201 - 1059 7.3e-115 369.5 186.9 13 28 1.4e-07 0.00016 22.0 2.2 1 23 602 624 602 624 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF658-201 - 1059 7.3e-115 369.5 186.9 14 28 2.5e-07 0.00028 21.2 0.4 1 23 630 652 630 652 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF658-201 - 1059 7.3e-115 369.5 186.9 15 28 3e-09 3.3e-06 27.2 0.4 1 23 658 680 658 680 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF658-201 - 1059 7.3e-115 369.5 186.9 16 28 3.5e-08 3.9e-05 23.9 0.9 1 23 686 708 686 708 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF658-201 - 1059 7.3e-115 369.5 186.9 17 28 1e-07 0.00011 22.4 0.5 1 23 714 736 714 736 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF658-201 - 1059 7.3e-115 369.5 186.9 18 28 5.4e-06 0.006 17.0 2.1 1 23 742 764 742 764 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF658-201 - 1059 7.3e-115 369.5 186.9 19 28 3.1e-07 0.00035 20.9 1.0 1 23 770 792 770 792 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF658-201 - 1059 7.3e-115 369.5 186.9 20 28 5.3e-08 6e-05 23.3 0.1 1 23 798 820 798 820 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF658-201 - 1059 7.3e-115 369.5 186.9 21 28 8.2e-08 9.2e-05 22.7 4.5 1 23 826 848 826 848 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF658-201 - 1059 7.3e-115 369.5 186.9 22 28 1.1e-08 1.3e-05 25.4 0.4 1 23 854 876 854 876 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF658-201 - 1059 7.3e-115 369.5 186.9 23 28 7.9e-09 8.8e-06 25.9 1.1 1 22 882 903 882 903 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF658-201 - 1059 7.3e-115 369.5 186.9 24 28 4.4e-07 0.00049 20.4 0.5 1 23 910 932 910 932 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF658-201 - 1059 7.3e-115 369.5 186.9 25 28 5.9e-09 6.6e-06 26.3 0.8 1 23 938 960 938 960 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF658-201 - 1059 7.3e-115 369.5 186.9 26 28 5.7e-10 6.4e-07 29.5 1.8 1 23 966 988 966 988 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF658-201 - 1059 7.3e-115 369.5 186.9 27 28 5e-09 5.6e-06 26.5 0.2 1 23 994 1016 994 1016 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF658-201 - 1059 7.3e-115 369.5 186.9 28 28 2.2e-07 0.00025 21.3 1.0 1 23 1022 1045 1022 1045 0.97 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZNF658-201 - 1059 3.6e-60 195.4 171.8 1 25 3 3.4e+03 -0.6 0.0 9 22 251 263 243 264 0.79 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF658-201 - 1059 3.6e-60 195.4 171.8 2 25 0.48 5.4e+02 1.9 0.1 5 22 329 346 325 348 0.84 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF658-201 - 1059 3.6e-60 195.4 171.8 3 25 0.19 2.2e+02 3.1 1.9 6 23 389 406 386 407 0.89 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF658-201 - 1059 3.6e-60 195.4 171.8 4 25 4.9 5.5e+03 -1.2 0.3 5 15 416 426 415 430 0.77 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF658-201 - 1059 3.6e-60 195.4 171.8 5 25 1.4e-05 0.015 16.1 1.4 1 23 440 462 440 463 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF658-201 - 1059 3.6e-60 195.4 171.8 6 25 4.3 4.8e+03 -1.0 0.1 6 13 473 480 467 487 0.74 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF658-201 - 1059 3.6e-60 195.4 171.8 7 25 2e-05 0.023 15.5 1.2 1 23 518 540 518 541 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF658-201 - 1059 3.6e-60 195.4 171.8 8 25 0.00067 0.75 10.8 3.7 1 23 546 568 546 569 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF658-201 - 1059 3.6e-60 195.4 171.8 9 25 6.6e-06 0.0073 17.1 0.3 1 23 574 596 574 597 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF658-201 - 1059 3.6e-60 195.4 171.8 10 25 0.00025 0.29 12.1 1.7 1 23 602 624 602 625 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF658-201 - 1059 3.6e-60 195.4 171.8 11 25 0.00058 0.65 11.0 0.5 1 23 630 652 630 653 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF658-201 - 1059 3.6e-60 195.4 171.8 12 25 5.9e-06 0.0066 17.2 0.3 1 23 658 680 658 681 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF658-201 - 1059 3.6e-60 195.4 171.8 13 25 0.00032 0.35 11.8 0.7 1 23 686 708 686 709 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF658-201 - 1059 3.6e-60 195.4 171.8 14 25 0.00019 0.21 12.5 0.5 1 23 714 736 714 737 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF658-201 - 1059 3.6e-60 195.4 171.8 15 25 1.3e-05 0.014 16.1 1.4 1 23 742 764 742 765 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF658-201 - 1059 3.6e-60 195.4 171.8 16 25 8.7e-06 0.0098 16.7 0.9 1 23 770 792 770 793 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF658-201 - 1059 3.6e-60 195.4 171.8 17 25 1.6e-05 0.018 15.8 0.1 1 23 798 820 798 821 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF658-201 - 1059 3.6e-60 195.4 171.8 18 25 3.1e-05 0.035 15.0 3.6 1 23 826 848 826 849 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF658-201 - 1059 3.6e-60 195.4 171.8 19 25 4.7e-06 0.0053 17.5 0.3 1 23 854 876 854 877 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF658-201 - 1059 3.6e-60 195.4 171.8 20 25 8.3e-06 0.0093 16.7 0.8 1 22 882 903 882 905 0.91 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF658-201 - 1059 3.6e-60 195.4 171.8 21 25 1.9e-05 0.021 15.6 0.7 1 23 910 932 910 933 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF658-201 - 1059 3.6e-60 195.4 171.8 22 25 3.8e-05 0.042 14.7 0.6 1 23 938 960 938 961 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF658-201 - 1059 3.6e-60 195.4 171.8 23 25 4.3e-06 0.0048 17.6 1.3 1 23 966 988 966 989 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF658-201 - 1059 3.6e-60 195.4 171.8 24 25 3.3e-05 0.037 14.9 0.2 1 23 994 1016 994 1017 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF658-201 - 1059 3.6e-60 195.4 171.8 25 25 8.7e-06 0.0097 16.7 0.9 1 24 1022 1045 1022 1045 0.91 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF658-201 - 1059 9.1e-34 114.8 136.2 1 20 0.002 2.3 8.3 1.9 2 24 440 462 439 465 0.80 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF658-201 - 1059 9.1e-34 114.8 136.2 2 20 0.0007 0.78 9.8 1.1 2 24 518 540 518 543 0.89 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF658-201 - 1059 9.1e-34 114.8 136.2 3 20 0.1 1.1e+02 2.9 2.3 2 12 546 556 546 557 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF658-201 - 1059 9.1e-34 114.8 136.2 4 20 2.3e-05 0.025 14.6 0.3 2 24 574 596 574 599 0.92 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF658-201 - 1059 9.1e-34 114.8 136.2 5 20 0.0041 4.6 7.4 1.4 2 22 602 622 602 626 0.90 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF658-201 - 1059 9.1e-34 114.8 136.2 6 20 0.00024 0.27 11.3 0.5 2 22 630 650 630 654 0.87 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF658-201 - 1059 9.1e-34 114.8 136.2 7 20 3.2e-06 0.0035 17.3 0.4 2 24 658 680 658 682 0.92 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF658-201 - 1059 9.1e-34 114.8 136.2 8 20 0.035 39 4.4 0.4 2 12 686 696 686 708 0.89 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF658-201 - 1059 9.1e-34 114.8 136.2 9 20 0.00029 0.32 11.0 0.6 2 20 714 732 714 736 0.92 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF658-201 - 1059 9.1e-34 114.8 136.2 10 20 0.00023 0.26 11.4 0.6 2 11 742 751 741 766 0.77 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF658-201 - 1059 9.1e-34 114.8 136.2 11 20 0.0012 1.3 9.1 0.8 2 12 770 780 770 792 0.90 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF658-201 - 1059 9.1e-34 114.8 136.2 12 20 2.6e-05 0.029 14.4 0.1 2 22 798 818 798 822 0.88 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF658-201 - 1059 9.1e-34 114.8 136.2 13 20 0.0017 1.9 8.6 2.2 2 12 826 836 826 848 0.85 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF658-201 - 1059 9.1e-34 114.8 136.2 14 20 5.2e-05 0.058 13.4 0.4 2 22 854 874 854 878 0.89 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF658-201 - 1059 9.1e-34 114.8 136.2 15 20 0.0003 0.34 11.0 0.9 2 23 882 903 882 904 0.95 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF658-201 - 1059 9.1e-34 114.8 136.2 16 20 0.0004 0.44 10.6 1.2 2 12 910 920 910 921 0.95 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF658-201 - 1059 9.1e-34 114.8 136.2 17 20 0.014 16 5.7 0.4 2 11 938 947 938 949 0.91 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF658-201 - 1059 9.1e-34 114.8 136.2 18 20 0.0083 9.3 6.4 0.4 2 12 966 976 965 986 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF658-201 - 1059 9.1e-34 114.8 136.2 19 20 0.0023 2.5 8.2 0.2 2 11 994 1003 994 1009 0.95 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF658-201 - 1059 9.1e-34 114.8 136.2 20 20 1.9e-05 0.022 14.8 0.4 2 21 1022 1041 1022 1048 0.84 C2H2-type zinc finger KRAB PF01352.27 42 ZNF658-201 - 1059 7.9e-22 76.6 0.1 1 1 1.4e-24 1.5e-21 75.7 0.1 1 42 7 48 7 48 0.99 KRAB box zf-C2H2_jaz PF12171.8 27 ZNF658-201 - 1059 9.5e-20 70.4 98.6 1 21 3.6 4e+03 -1.7 0.4 7 22 389 404 389 404 0.90 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF658-201 - 1059 9.5e-20 70.4 98.6 2 21 4.3 4.9e+03 -2.0 1.5 2 21 440 459 440 460 0.75 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF658-201 - 1059 9.5e-20 70.4 98.6 3 21 0.00011 0.12 12.6 0.1 2 22 518 538 517 538 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF658-201 - 1059 9.5e-20 70.4 98.6 4 21 0.00059 0.66 10.3 0.8 2 21 546 565 545 566 0.88 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF658-201 - 1059 9.5e-20 70.4 98.6 5 21 0.079 88 3.6 0.1 2 22 574 594 573 594 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF658-201 - 1059 9.5e-20 70.4 98.6 6 21 0.0011 1.3 9.4 0.7 2 20 602 620 601 621 0.96 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF658-201 - 1059 9.5e-20 70.4 98.6 7 21 0.0013 1.5 9.2 0.1 2 22 630 650 629 650 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF658-201 - 1059 9.5e-20 70.4 98.6 8 21 0.042 47 4.4 0.0 2 22 658 678 657 678 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF658-201 - 1059 9.5e-20 70.4 98.6 9 21 0.001 1.1 9.6 0.4 2 22 686 706 685 706 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF658-201 - 1059 9.5e-20 70.4 98.6 10 21 5.7e-05 0.064 13.6 0.6 2 22 714 734 713 734 0.95 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF658-201 - 1059 9.5e-20 70.4 98.6 11 21 0.19 2.2e+02 2.3 0.1 2 11 742 751 741 762 0.80 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF658-201 - 1059 9.5e-20 70.4 98.6 12 21 0.68 7.6e+02 0.6 0.1 2 21 770 789 769 790 0.83 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF658-201 - 1059 9.5e-20 70.4 98.6 13 21 0.1 1.1e+02 3.2 0.1 2 20 798 816 797 818 0.75 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF658-201 - 1059 9.5e-20 70.4 98.6 14 21 0.67 7.5e+02 0.6 0.7 2 12 826 836 825 846 0.85 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF658-201 - 1059 9.5e-20 70.4 98.6 15 21 0.00024 0.27 11.6 0.1 2 20 854 872 853 873 0.96 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF658-201 - 1059 9.5e-20 70.4 98.6 16 21 0.00043 0.48 10.8 0.1 2 24 882 904 881 905 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF658-201 - 1059 9.5e-20 70.4 98.6 17 21 0.012 14 6.1 0.1 2 21 910 929 909 930 0.85 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF658-201 - 1059 9.5e-20 70.4 98.6 18 21 0.0046 5.2 7.5 0.0 2 22 938 958 937 958 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF658-201 - 1059 9.5e-20 70.4 98.6 19 21 0.1 1.2e+02 3.2 0.7 2 22 966 986 965 986 0.89 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF658-201 - 1059 9.5e-20 70.4 98.6 20 21 0.031 35 4.8 0.1 2 22 994 1014 993 1014 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF658-201 - 1059 9.5e-20 70.4 98.6 21 21 0.0035 3.9 7.9 0.0 2 20 1022 1040 1021 1040 0.93 Zinc-finger double-stranded RNA-binding Zn-ribbon_8 PF09723.10 40 ZNF658-201 - 1059 1.5e-16 60.2 122.1 1 18 8.5 9.6e+03 -3.2 0.0 5 15 296 306 292 313 0.74 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF658-201 - 1059 1.5e-16 60.2 122.1 2 18 0.045 50 4.1 1.8 6 16 440 450 439 476 0.79 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF658-201 - 1059 1.5e-16 60.2 122.1 3 18 0.0026 2.9 8.1 4.6 6 34 518 553 517 559 0.91 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF658-201 - 1059 1.5e-16 60.2 122.1 4 18 0.00011 0.12 12.5 3.6 6 34 574 609 573 614 0.92 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF658-201 - 1059 1.5e-16 60.2 122.1 5 18 0.00012 0.14 12.3 4.4 6 34 630 665 629 668 0.92 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF658-201 - 1059 1.5e-16 60.2 122.1 6 18 0.0024 2.7 8.2 6.1 6 34 658 693 657 697 0.91 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF658-201 - 1059 1.5e-16 60.2 122.1 7 18 0.013 15 5.8 6.9 6 34 686 721 684 725 0.91 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF658-201 - 1059 1.5e-16 60.2 122.1 8 18 0.018 20 5.4 7.7 6 34 714 749 713 755 0.86 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF658-201 - 1059 1.5e-16 60.2 122.1 9 18 0.0021 2.3 8.4 6.1 6 35 742 778 741 782 0.85 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF658-201 - 1059 1.5e-16 60.2 122.1 10 18 0.0016 1.7 8.8 4.0 6 34 770 805 768 808 0.81 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF658-201 - 1059 1.5e-16 60.2 122.1 11 18 2.6e-05 0.029 14.5 2.2 6 36 798 835 796 839 0.90 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF658-201 - 1059 1.5e-16 60.2 122.1 12 18 0.00014 0.16 12.1 7.0 6 35 826 862 825 865 0.93 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF658-201 - 1059 1.5e-16 60.2 122.1 13 18 0.00016 0.17 12.0 5.3 6 38 854 893 853 895 0.90 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF658-201 - 1059 1.5e-16 60.2 122.1 14 18 0.00067 0.75 10.0 5.3 6 34 882 917 880 917 0.82 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF658-201 - 1059 1.5e-16 60.2 122.1 15 18 0.00014 0.16 12.1 4.4 6 35 910 946 909 950 0.92 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF658-201 - 1059 1.5e-16 60.2 122.1 16 18 0.00025 0.28 11.3 3.7 6 35 938 974 937 978 0.90 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF658-201 - 1059 1.5e-16 60.2 122.1 17 18 1.1e-05 0.012 15.7 4.6 6 35 966 1002 964 1006 0.91 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF658-201 - 1059 1.5e-16 60.2 122.1 18 18 7.1e-06 0.0079 16.3 3.7 6 38 994 1033 993 1035 0.90 Zinc ribbon domain zf-met PF12874.7 25 ZNF658-201 - 1059 1.4e-13 50.7 147.2 1 21 0.01 11 6.5 0.3 6 20 389 403 389 404 0.94 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF658-201 - 1059 1.4e-13 50.7 147.2 2 21 0.08 90 3.7 2.6 1 22 440 461 440 463 0.92 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF658-201 - 1059 1.4e-13 50.7 147.2 3 21 0.058 65 4.1 0.7 1 21 518 538 518 541 0.88 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF658-201 - 1059 1.4e-13 50.7 147.2 4 21 0.0073 8.2 7.0 2.5 1 20 546 565 546 568 0.92 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF658-201 - 1059 1.4e-13 50.7 147.2 5 21 0.0004 0.44 11.0 0.5 1 21 574 594 574 597 0.92 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF658-201 - 1059 1.4e-13 50.7 147.2 6 21 0.00039 0.43 11.0 0.8 1 19 602 620 602 623 0.97 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF658-201 - 1059 1.4e-13 50.7 147.2 7 21 0.0013 1.5 9.4 0.5 1 21 630 650 630 653 0.92 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF658-201 - 1059 1.4e-13 50.7 147.2 8 21 0.0011 1.2 9.6 0.4 1 21 658 678 658 681 0.92 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF658-201 - 1059 1.4e-13 50.7 147.2 9 21 0.00015 0.17 12.3 1.0 1 21 686 706 686 709 0.92 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF658-201 - 1059 1.4e-13 50.7 147.2 10 21 0.00011 0.12 12.8 1.3 1 22 714 735 714 737 0.92 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF658-201 - 1059 1.4e-13 50.7 147.2 11 21 0.57 6.4e+02 1.0 0.3 1 19 742 760 742 764 0.79 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF658-201 - 1059 1.4e-13 50.7 147.2 12 21 0.23 2.6e+02 2.2 0.9 1 21 770 790 770 793 0.88 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF658-201 - 1059 1.4e-13 50.7 147.2 13 21 0.002 2.2 8.8 0.2 1 21 798 818 798 821 0.90 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF658-201 - 1059 1.4e-13 50.7 147.2 14 21 4.2 4.8e+03 -1.8 2.3 1 20 826 845 826 849 0.81 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF658-201 - 1059 1.4e-13 50.7 147.2 15 21 0.00089 1 9.9 0.2 1 19 854 872 854 875 0.97 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF658-201 - 1059 1.4e-13 50.7 147.2 16 21 0.00043 0.48 10.9 0.3 1 21 882 902 882 904 0.94 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF658-201 - 1059 1.4e-13 50.7 147.2 17 21 0.085 96 3.6 0.8 1 20 910 929 910 932 0.90 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF658-201 - 1059 1.4e-13 50.7 147.2 18 21 0.0011 1.2 9.6 0.3 1 21 938 958 938 961 0.91 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF658-201 - 1059 1.4e-13 50.7 147.2 19 21 0.0021 2.3 8.7 1.5 1 21 966 986 966 989 0.92 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF658-201 - 1059 1.4e-13 50.7 147.2 20 21 0.25 2.8e+02 2.1 0.3 1 21 994 1014 994 1017 0.90 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF658-201 - 1059 1.4e-13 50.7 147.2 21 21 0.036 40 4.8 0.0 1 19 1022 1040 1022 1040 0.94 Zinc-finger of C2H2 type # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF658-201.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF658-201.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF658-201.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF658-201.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF658-201.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:11:41 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF658-202.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF658-202.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF658-202.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF658-202.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF658-202.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:11:42 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF658-203.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF658-203.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF658-203.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF658-203.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF658-203.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:11:42 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF658-204.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF658-204.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF658-204.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF658-204.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF658-204.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:11:42 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF658-205.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF658-205.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF658-205.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF658-205.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF658-205.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:11:43 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZNF658-206 - 1059 1.6e-170 546.7 168.2 1 24 0.0049 5.5 7.6 0.7 2 24 368 393 367 395 0.89 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF658-206 - 1059 1.6e-170 546.7 168.2 2 24 6.7e-05 0.075 13.5 0.4 1 24 398 421 398 421 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF658-206 - 1059 1.6e-170 546.7 168.2 3 24 0.0034 3.8 8.1 0.4 11 24 436 449 424 449 0.78 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF658-206 - 1059 1.6e-170 546.7 168.2 4 24 5.5e-05 0.062 13.8 0.8 1 25 454 478 454 479 0.83 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF658-206 - 1059 1.6e-170 546.7 168.2 5 24 8.2e-08 9.2e-05 22.7 0.3 5 25 504 528 502 529 0.83 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF658-206 - 1059 1.6e-170 546.7 168.2 6 24 3.3e-11 3.7e-08 33.4 2.7 1 26 532 557 532 557 0.97 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF658-206 - 1059 1.6e-170 546.7 168.2 7 24 2e-11 2.2e-08 34.1 1.2 1 25 560 584 560 585 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF658-206 - 1059 1.6e-170 546.7 168.2 8 24 1.6e-12 1.8e-09 37.6 0.6 1 26 588 613 588 613 0.97 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF658-206 - 1059 1.6e-170 546.7 168.2 9 24 1.5e-10 1.7e-07 31.3 1.4 1 26 616 641 616 641 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF658-206 - 1059 1.6e-170 546.7 168.2 10 24 1.1e-10 1.2e-07 31.8 0.6 2 25 645 668 645 669 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF658-206 - 1059 1.6e-170 546.7 168.2 11 24 2.2e-11 2.5e-08 34.0 0.8 1 26 672 697 672 697 0.97 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF658-206 - 1059 1.6e-170 546.7 168.2 12 24 3.8e-11 4.3e-08 33.2 1.0 1 26 700 725 700 725 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF658-206 - 1059 1.6e-170 546.7 168.2 13 24 5.4e-10 6.1e-07 29.6 0.2 1 24 728 751 728 753 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF658-206 - 1059 1.6e-170 546.7 168.2 14 24 5e-12 5.6e-09 36.0 1.2 2 25 757 780 756 781 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF658-206 - 1059 1.6e-170 546.7 168.2 15 24 4.5e-11 5e-08 33.0 0.4 2 25 785 808 784 809 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF658-206 - 1059 1.6e-170 546.7 168.2 16 24 5.5e-11 6.2e-08 32.7 0.1 2 25 813 836 812 837 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF658-206 - 1059 1.6e-170 546.7 168.2 17 24 4.4e-10 4.9e-07 29.9 2.2 4 25 843 864 840 865 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF658-206 - 1059 1.6e-170 546.7 168.2 18 24 5.2e-11 5.8e-08 32.8 1.2 1 25 868 892 868 893 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF658-206 - 1059 1.6e-170 546.7 168.2 19 24 1.1e-09 1.2e-06 28.7 0.6 1 25 896 920 896 921 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF658-206 - 1059 1.6e-170 546.7 168.2 20 24 1.1e-09 1.2e-06 28.6 1.0 3 26 926 949 924 949 0.90 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF658-206 - 1059 1.6e-170 546.7 168.2 21 24 5.8e-10 6.5e-07 29.5 0.2 2 25 953 976 952 977 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF658-206 - 1059 1.6e-170 546.7 168.2 22 24 4e-12 4.5e-09 36.3 0.4 1 25 980 1004 980 1005 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF658-206 - 1059 1.6e-170 546.7 168.2 23 24 4e-12 4.5e-09 36.3 0.3 2 26 1009 1033 1008 1033 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF658-206 - 1059 1.6e-170 546.7 168.2 24 24 0.038 43 4.8 0.3 5 17 1041 1053 1036 1055 0.85 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZNF658-206 - 1059 7.3e-115 369.5 186.9 1 28 1.6 1.8e+03 -0.3 0.0 10 22 252 263 243 263 0.82 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF658-206 - 1059 7.3e-115 369.5 186.9 2 28 7.2 8.1e+03 -2.3 0.1 14 23 286 296 278 296 0.65 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF658-206 - 1059 7.3e-115 369.5 186.9 3 28 0.73 8.2e+02 0.8 0.1 5 22 329 346 328 346 0.89 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF658-206 - 1059 7.3e-115 369.5 186.9 4 28 1.1 1.2e+03 0.2 0.1 12 23 364 375 356 375 0.77 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF658-206 - 1059 7.3e-115 369.5 186.9 5 28 0.00058 0.65 10.6 2.1 5 21 388 404 386 406 0.92 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF658-206 - 1059 7.3e-115 369.5 186.9 6 28 1.3 1.4e+03 0.0 0.3 5 15 416 426 415 430 0.86 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF658-206 - 1059 7.3e-115 369.5 186.9 7 28 4.2e-09 4.7e-06 26.8 1.5 1 23 440 462 440 462 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF658-206 - 1059 7.3e-115 369.5 186.9 8 28 0.21 2.4e+02 2.5 0.2 3 13 468 480 467 481 0.86 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF658-206 - 1059 7.3e-115 369.5 186.9 9 28 4.1 4.6e+03 -1.6 0.0 13 21 502 510 496 511 0.80 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF658-206 - 1059 7.3e-115 369.5 186.9 10 28 3.5e-07 0.00039 20.7 1.6 1 23 518 540 518 540 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF658-206 - 1059 7.3e-115 369.5 186.9 11 28 4.5e-07 0.00051 20.4 3.8 1 23 546 568 546 568 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF658-206 - 1059 7.3e-115 369.5 186.9 12 28 6.4e-10 7.2e-07 29.3 0.4 1 23 574 596 574 596 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF658-206 - 1059 7.3e-115 369.5 186.9 13 28 1.4e-07 0.00016 22.0 2.2 1 23 602 624 602 624 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF658-206 - 1059 7.3e-115 369.5 186.9 14 28 2.5e-07 0.00028 21.2 0.4 1 23 630 652 630 652 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF658-206 - 1059 7.3e-115 369.5 186.9 15 28 3e-09 3.3e-06 27.2 0.4 1 23 658 680 658 680 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF658-206 - 1059 7.3e-115 369.5 186.9 16 28 3.5e-08 3.9e-05 23.9 0.9 1 23 686 708 686 708 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF658-206 - 1059 7.3e-115 369.5 186.9 17 28 1e-07 0.00011 22.4 0.5 1 23 714 736 714 736 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF658-206 - 1059 7.3e-115 369.5 186.9 18 28 5.4e-06 0.006 17.0 2.1 1 23 742 764 742 764 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF658-206 - 1059 7.3e-115 369.5 186.9 19 28 3.1e-07 0.00035 20.9 1.0 1 23 770 792 770 792 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF658-206 - 1059 7.3e-115 369.5 186.9 20 28 5.3e-08 6e-05 23.3 0.1 1 23 798 820 798 820 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF658-206 - 1059 7.3e-115 369.5 186.9 21 28 8.2e-08 9.2e-05 22.7 4.5 1 23 826 848 826 848 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF658-206 - 1059 7.3e-115 369.5 186.9 22 28 1.1e-08 1.3e-05 25.4 0.4 1 23 854 876 854 876 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF658-206 - 1059 7.3e-115 369.5 186.9 23 28 7.9e-09 8.8e-06 25.9 1.1 1 22 882 903 882 903 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF658-206 - 1059 7.3e-115 369.5 186.9 24 28 4.4e-07 0.00049 20.4 0.5 1 23 910 932 910 932 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF658-206 - 1059 7.3e-115 369.5 186.9 25 28 5.9e-09 6.6e-06 26.3 0.8 1 23 938 960 938 960 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF658-206 - 1059 7.3e-115 369.5 186.9 26 28 5.7e-10 6.4e-07 29.5 1.8 1 23 966 988 966 988 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF658-206 - 1059 7.3e-115 369.5 186.9 27 28 5e-09 5.6e-06 26.5 0.2 1 23 994 1016 994 1016 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF658-206 - 1059 7.3e-115 369.5 186.9 28 28 2.2e-07 0.00025 21.3 1.0 1 23 1022 1045 1022 1045 0.97 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZNF658-206 - 1059 3.6e-60 195.4 171.8 1 25 3 3.4e+03 -0.6 0.0 9 22 251 263 243 264 0.79 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF658-206 - 1059 3.6e-60 195.4 171.8 2 25 0.48 5.4e+02 1.9 0.1 5 22 329 346 325 348 0.84 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF658-206 - 1059 3.6e-60 195.4 171.8 3 25 0.19 2.2e+02 3.1 1.9 6 23 389 406 386 407 0.89 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF658-206 - 1059 3.6e-60 195.4 171.8 4 25 4.9 5.5e+03 -1.2 0.3 5 15 416 426 415 430 0.77 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF658-206 - 1059 3.6e-60 195.4 171.8 5 25 1.4e-05 0.015 16.1 1.4 1 23 440 462 440 463 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF658-206 - 1059 3.6e-60 195.4 171.8 6 25 4.3 4.8e+03 -1.0 0.1 6 13 473 480 467 487 0.74 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF658-206 - 1059 3.6e-60 195.4 171.8 7 25 2e-05 0.023 15.5 1.2 1 23 518 540 518 541 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF658-206 - 1059 3.6e-60 195.4 171.8 8 25 0.00067 0.75 10.8 3.7 1 23 546 568 546 569 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF658-206 - 1059 3.6e-60 195.4 171.8 9 25 6.6e-06 0.0073 17.1 0.3 1 23 574 596 574 597 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF658-206 - 1059 3.6e-60 195.4 171.8 10 25 0.00025 0.29 12.1 1.7 1 23 602 624 602 625 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF658-206 - 1059 3.6e-60 195.4 171.8 11 25 0.00058 0.65 11.0 0.5 1 23 630 652 630 653 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF658-206 - 1059 3.6e-60 195.4 171.8 12 25 5.9e-06 0.0066 17.2 0.3 1 23 658 680 658 681 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF658-206 - 1059 3.6e-60 195.4 171.8 13 25 0.00032 0.35 11.8 0.7 1 23 686 708 686 709 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF658-206 - 1059 3.6e-60 195.4 171.8 14 25 0.00019 0.21 12.5 0.5 1 23 714 736 714 737 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF658-206 - 1059 3.6e-60 195.4 171.8 15 25 1.3e-05 0.014 16.1 1.4 1 23 742 764 742 765 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF658-206 - 1059 3.6e-60 195.4 171.8 16 25 8.7e-06 0.0098 16.7 0.9 1 23 770 792 770 793 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF658-206 - 1059 3.6e-60 195.4 171.8 17 25 1.6e-05 0.018 15.8 0.1 1 23 798 820 798 821 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF658-206 - 1059 3.6e-60 195.4 171.8 18 25 3.1e-05 0.035 15.0 3.6 1 23 826 848 826 849 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF658-206 - 1059 3.6e-60 195.4 171.8 19 25 4.7e-06 0.0053 17.5 0.3 1 23 854 876 854 877 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF658-206 - 1059 3.6e-60 195.4 171.8 20 25 8.3e-06 0.0093 16.7 0.8 1 22 882 903 882 905 0.91 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF658-206 - 1059 3.6e-60 195.4 171.8 21 25 1.9e-05 0.021 15.6 0.7 1 23 910 932 910 933 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF658-206 - 1059 3.6e-60 195.4 171.8 22 25 3.8e-05 0.042 14.7 0.6 1 23 938 960 938 961 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF658-206 - 1059 3.6e-60 195.4 171.8 23 25 4.3e-06 0.0048 17.6 1.3 1 23 966 988 966 989 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF658-206 - 1059 3.6e-60 195.4 171.8 24 25 3.3e-05 0.037 14.9 0.2 1 23 994 1016 994 1017 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF658-206 - 1059 3.6e-60 195.4 171.8 25 25 8.7e-06 0.0097 16.7 0.9 1 24 1022 1045 1022 1045 0.91 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF658-206 - 1059 9.1e-34 114.8 136.2 1 20 0.002 2.3 8.3 1.9 2 24 440 462 439 465 0.80 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF658-206 - 1059 9.1e-34 114.8 136.2 2 20 0.0007 0.78 9.8 1.1 2 24 518 540 518 543 0.89 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF658-206 - 1059 9.1e-34 114.8 136.2 3 20 0.1 1.1e+02 2.9 2.3 2 12 546 556 546 557 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF658-206 - 1059 9.1e-34 114.8 136.2 4 20 2.3e-05 0.025 14.6 0.3 2 24 574 596 574 599 0.92 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF658-206 - 1059 9.1e-34 114.8 136.2 5 20 0.0041 4.6 7.4 1.4 2 22 602 622 602 626 0.90 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF658-206 - 1059 9.1e-34 114.8 136.2 6 20 0.00024 0.27 11.3 0.5 2 22 630 650 630 654 0.87 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF658-206 - 1059 9.1e-34 114.8 136.2 7 20 3.2e-06 0.0035 17.3 0.4 2 24 658 680 658 682 0.92 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF658-206 - 1059 9.1e-34 114.8 136.2 8 20 0.035 39 4.4 0.4 2 12 686 696 686 708 0.89 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF658-206 - 1059 9.1e-34 114.8 136.2 9 20 0.00029 0.32 11.0 0.6 2 20 714 732 714 736 0.92 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF658-206 - 1059 9.1e-34 114.8 136.2 10 20 0.00023 0.26 11.4 0.6 2 11 742 751 741 766 0.77 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF658-206 - 1059 9.1e-34 114.8 136.2 11 20 0.0012 1.3 9.1 0.8 2 12 770 780 770 792 0.90 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF658-206 - 1059 9.1e-34 114.8 136.2 12 20 2.6e-05 0.029 14.4 0.1 2 22 798 818 798 822 0.88 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF658-206 - 1059 9.1e-34 114.8 136.2 13 20 0.0017 1.9 8.6 2.2 2 12 826 836 826 848 0.85 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF658-206 - 1059 9.1e-34 114.8 136.2 14 20 5.2e-05 0.058 13.4 0.4 2 22 854 874 854 878 0.89 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF658-206 - 1059 9.1e-34 114.8 136.2 15 20 0.0003 0.34 11.0 0.9 2 23 882 903 882 904 0.95 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF658-206 - 1059 9.1e-34 114.8 136.2 16 20 0.0004 0.44 10.6 1.2 2 12 910 920 910 921 0.95 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF658-206 - 1059 9.1e-34 114.8 136.2 17 20 0.014 16 5.7 0.4 2 11 938 947 938 949 0.91 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF658-206 - 1059 9.1e-34 114.8 136.2 18 20 0.0083 9.3 6.4 0.4 2 12 966 976 965 986 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF658-206 - 1059 9.1e-34 114.8 136.2 19 20 0.0023 2.5 8.2 0.2 2 11 994 1003 994 1009 0.95 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF658-206 - 1059 9.1e-34 114.8 136.2 20 20 1.9e-05 0.022 14.8 0.4 2 21 1022 1041 1022 1048 0.84 C2H2-type zinc finger KRAB PF01352.27 42 ZNF658-206 - 1059 7.9e-22 76.6 0.1 1 1 1.4e-24 1.5e-21 75.7 0.1 1 42 7 48 7 48 0.99 KRAB box zf-C2H2_jaz PF12171.8 27 ZNF658-206 - 1059 9.5e-20 70.4 98.6 1 21 3.6 4e+03 -1.7 0.4 7 22 389 404 389 404 0.90 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF658-206 - 1059 9.5e-20 70.4 98.6 2 21 4.3 4.9e+03 -2.0 1.5 2 21 440 459 440 460 0.75 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF658-206 - 1059 9.5e-20 70.4 98.6 3 21 0.00011 0.12 12.6 0.1 2 22 518 538 517 538 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF658-206 - 1059 9.5e-20 70.4 98.6 4 21 0.00059 0.66 10.3 0.8 2 21 546 565 545 566 0.88 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF658-206 - 1059 9.5e-20 70.4 98.6 5 21 0.079 88 3.6 0.1 2 22 574 594 573 594 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF658-206 - 1059 9.5e-20 70.4 98.6 6 21 0.0011 1.3 9.4 0.7 2 20 602 620 601 621 0.96 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF658-206 - 1059 9.5e-20 70.4 98.6 7 21 0.0013 1.5 9.2 0.1 2 22 630 650 629 650 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF658-206 - 1059 9.5e-20 70.4 98.6 8 21 0.042 47 4.4 0.0 2 22 658 678 657 678 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF658-206 - 1059 9.5e-20 70.4 98.6 9 21 0.001 1.1 9.6 0.4 2 22 686 706 685 706 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF658-206 - 1059 9.5e-20 70.4 98.6 10 21 5.7e-05 0.064 13.6 0.6 2 22 714 734 713 734 0.95 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF658-206 - 1059 9.5e-20 70.4 98.6 11 21 0.19 2.2e+02 2.3 0.1 2 11 742 751 741 762 0.80 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF658-206 - 1059 9.5e-20 70.4 98.6 12 21 0.68 7.6e+02 0.6 0.1 2 21 770 789 769 790 0.83 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF658-206 - 1059 9.5e-20 70.4 98.6 13 21 0.1 1.1e+02 3.2 0.1 2 20 798 816 797 818 0.75 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF658-206 - 1059 9.5e-20 70.4 98.6 14 21 0.67 7.5e+02 0.6 0.7 2 12 826 836 825 846 0.85 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF658-206 - 1059 9.5e-20 70.4 98.6 15 21 0.00024 0.27 11.6 0.1 2 20 854 872 853 873 0.96 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF658-206 - 1059 9.5e-20 70.4 98.6 16 21 0.00043 0.48 10.8 0.1 2 24 882 904 881 905 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF658-206 - 1059 9.5e-20 70.4 98.6 17 21 0.012 14 6.1 0.1 2 21 910 929 909 930 0.85 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF658-206 - 1059 9.5e-20 70.4 98.6 18 21 0.0046 5.2 7.5 0.0 2 22 938 958 937 958 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF658-206 - 1059 9.5e-20 70.4 98.6 19 21 0.1 1.2e+02 3.2 0.7 2 22 966 986 965 986 0.89 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF658-206 - 1059 9.5e-20 70.4 98.6 20 21 0.031 35 4.8 0.1 2 22 994 1014 993 1014 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF658-206 - 1059 9.5e-20 70.4 98.6 21 21 0.0035 3.9 7.9 0.0 2 20 1022 1040 1021 1040 0.93 Zinc-finger double-stranded RNA-binding Zn-ribbon_8 PF09723.10 40 ZNF658-206 - 1059 1.5e-16 60.2 122.1 1 18 8.5 9.6e+03 -3.2 0.0 5 15 296 306 292 313 0.74 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF658-206 - 1059 1.5e-16 60.2 122.1 2 18 0.045 50 4.1 1.8 6 16 440 450 439 476 0.79 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF658-206 - 1059 1.5e-16 60.2 122.1 3 18 0.0026 2.9 8.1 4.6 6 34 518 553 517 559 0.91 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF658-206 - 1059 1.5e-16 60.2 122.1 4 18 0.00011 0.12 12.5 3.6 6 34 574 609 573 614 0.92 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF658-206 - 1059 1.5e-16 60.2 122.1 5 18 0.00012 0.14 12.3 4.4 6 34 630 665 629 668 0.92 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF658-206 - 1059 1.5e-16 60.2 122.1 6 18 0.0024 2.7 8.2 6.1 6 34 658 693 657 697 0.91 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF658-206 - 1059 1.5e-16 60.2 122.1 7 18 0.013 15 5.8 6.9 6 34 686 721 684 725 0.91 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF658-206 - 1059 1.5e-16 60.2 122.1 8 18 0.018 20 5.4 7.7 6 34 714 749 713 755 0.86 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF658-206 - 1059 1.5e-16 60.2 122.1 9 18 0.0021 2.3 8.4 6.1 6 35 742 778 741 782 0.85 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF658-206 - 1059 1.5e-16 60.2 122.1 10 18 0.0016 1.7 8.8 4.0 6 34 770 805 768 808 0.81 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF658-206 - 1059 1.5e-16 60.2 122.1 11 18 2.6e-05 0.029 14.5 2.2 6 36 798 835 796 839 0.90 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF658-206 - 1059 1.5e-16 60.2 122.1 12 18 0.00014 0.16 12.1 7.0 6 35 826 862 825 865 0.93 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF658-206 - 1059 1.5e-16 60.2 122.1 13 18 0.00016 0.17 12.0 5.3 6 38 854 893 853 895 0.90 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF658-206 - 1059 1.5e-16 60.2 122.1 14 18 0.00067 0.75 10.0 5.3 6 34 882 917 880 917 0.82 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF658-206 - 1059 1.5e-16 60.2 122.1 15 18 0.00014 0.16 12.1 4.4 6 35 910 946 909 950 0.92 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF658-206 - 1059 1.5e-16 60.2 122.1 16 18 0.00025 0.28 11.3 3.7 6 35 938 974 937 978 0.90 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF658-206 - 1059 1.5e-16 60.2 122.1 17 18 1.1e-05 0.012 15.7 4.6 6 35 966 1002 964 1006 0.91 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF658-206 - 1059 1.5e-16 60.2 122.1 18 18 7.1e-06 0.0079 16.3 3.7 6 38 994 1033 993 1035 0.90 Zinc ribbon domain zf-met PF12874.7 25 ZNF658-206 - 1059 1.4e-13 50.7 147.2 1 21 0.01 11 6.5 0.3 6 20 389 403 389 404 0.94 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF658-206 - 1059 1.4e-13 50.7 147.2 2 21 0.08 90 3.7 2.6 1 22 440 461 440 463 0.92 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF658-206 - 1059 1.4e-13 50.7 147.2 3 21 0.058 65 4.1 0.7 1 21 518 538 518 541 0.88 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF658-206 - 1059 1.4e-13 50.7 147.2 4 21 0.0073 8.2 7.0 2.5 1 20 546 565 546 568 0.92 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF658-206 - 1059 1.4e-13 50.7 147.2 5 21 0.0004 0.44 11.0 0.5 1 21 574 594 574 597 0.92 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF658-206 - 1059 1.4e-13 50.7 147.2 6 21 0.00039 0.43 11.0 0.8 1 19 602 620 602 623 0.97 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF658-206 - 1059 1.4e-13 50.7 147.2 7 21 0.0013 1.5 9.4 0.5 1 21 630 650 630 653 0.92 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF658-206 - 1059 1.4e-13 50.7 147.2 8 21 0.0011 1.2 9.6 0.4 1 21 658 678 658 681 0.92 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF658-206 - 1059 1.4e-13 50.7 147.2 9 21 0.00015 0.17 12.3 1.0 1 21 686 706 686 709 0.92 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF658-206 - 1059 1.4e-13 50.7 147.2 10 21 0.00011 0.12 12.8 1.3 1 22 714 735 714 737 0.92 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF658-206 - 1059 1.4e-13 50.7 147.2 11 21 0.57 6.4e+02 1.0 0.3 1 19 742 760 742 764 0.79 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF658-206 - 1059 1.4e-13 50.7 147.2 12 21 0.23 2.6e+02 2.2 0.9 1 21 770 790 770 793 0.88 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF658-206 - 1059 1.4e-13 50.7 147.2 13 21 0.002 2.2 8.8 0.2 1 21 798 818 798 821 0.90 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF658-206 - 1059 1.4e-13 50.7 147.2 14 21 4.2 4.8e+03 -1.8 2.3 1 20 826 845 826 849 0.81 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF658-206 - 1059 1.4e-13 50.7 147.2 15 21 0.00089 1 9.9 0.2 1 19 854 872 854 875 0.97 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF658-206 - 1059 1.4e-13 50.7 147.2 16 21 0.00043 0.48 10.9 0.3 1 21 882 902 882 904 0.94 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF658-206 - 1059 1.4e-13 50.7 147.2 17 21 0.085 96 3.6 0.8 1 20 910 929 910 932 0.90 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF658-206 - 1059 1.4e-13 50.7 147.2 18 21 0.0011 1.2 9.6 0.3 1 21 938 958 938 961 0.91 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF658-206 - 1059 1.4e-13 50.7 147.2 19 21 0.0021 2.3 8.7 1.5 1 21 966 986 966 989 0.92 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF658-206 - 1059 1.4e-13 50.7 147.2 20 21 0.25 2.8e+02 2.1 0.3 1 21 994 1014 994 1017 0.90 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF658-206 - 1059 1.4e-13 50.7 147.2 21 21 0.036 40 4.8 0.0 1 19 1022 1040 1022 1040 0.94 Zinc-finger of C2H2 type # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF658-206.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF658-206.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF658-206.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF658-206.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF658-206.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:11:43 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZNF658-207 - 617 1.5e-32 110.6 54.8 1 9 3.8 5.7e+03 -1.9 0.1 8 18 290 300 289 306 0.78 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF658-207 - 617 1.5e-32 110.6 54.8 2 9 0.002 2.9 8.5 0.7 2 24 368 393 367 395 0.89 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF658-207 - 617 1.5e-32 110.6 54.8 3 9 2.7e-05 0.04 14.3 0.4 1 24 398 421 398 421 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF658-207 - 617 1.5e-32 110.6 54.8 4 9 0.0014 2 9.0 0.4 11 24 436 449 424 449 0.78 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF658-207 - 617 1.5e-32 110.6 54.8 5 9 2.2e-05 0.033 14.6 0.8 1 25 454 478 454 479 0.83 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF658-207 - 617 1.5e-32 110.6 54.8 6 9 3.3e-08 4.9e-05 23.6 0.3 5 25 504 528 502 529 0.83 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF658-207 - 617 1.5e-32 110.6 54.8 7 9 1.3e-11 2e-08 34.3 2.7 1 26 532 557 532 557 0.97 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF658-207 - 617 1.5e-32 110.6 54.8 8 9 8.1e-12 1.2e-08 35.0 1.2 1 25 560 584 560 585 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF658-207 - 617 1.5e-32 110.6 54.8 9 9 0.017 26 5.5 0.1 1 11 588 598 588 600 0.93 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZNF658-207 - 617 1.8e-23 81.6 67.0 1 13 0.67 1e+03 0.5 0.0 10 22 252 263 243 263 0.82 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF658-207 - 617 1.8e-23 81.6 67.0 2 13 2.7 4e+03 -1.4 0.1 6 23 279 296 277 296 0.66 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF658-207 - 617 1.8e-23 81.6 67.0 3 13 8.8 1.3e+04 -3.0 0.0 7 16 303 312 297 313 0.60 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF658-207 - 617 1.8e-23 81.6 67.0 4 13 0.3 4.5e+02 1.6 0.1 5 22 329 346 328 346 0.89 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF658-207 - 617 1.8e-23 81.6 67.0 5 13 0.46 6.8e+02 1.1 0.1 12 23 364 375 356 375 0.77 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF658-207 - 617 1.8e-23 81.6 67.0 6 13 0.00024 0.35 11.4 2.1 5 21 388 404 386 406 0.92 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF658-207 - 617 1.8e-23 81.6 67.0 7 13 0.53 7.9e+02 0.8 0.3 5 15 416 426 415 430 0.86 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF658-207 - 617 1.8e-23 81.6 67.0 8 13 1.7e-09 2.5e-06 27.6 1.5 1 23 440 462 440 462 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF658-207 - 617 1.8e-23 81.6 67.0 9 13 0.088 1.3e+02 3.3 0.2 3 13 468 480 467 481 0.86 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF658-207 - 617 1.8e-23 81.6 67.0 10 13 1.5 2.3e+03 -0.6 0.0 12 21 501 510 494 511 0.80 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF658-207 - 617 1.8e-23 81.6 67.0 11 13 1.4e-07 0.00021 21.5 1.6 1 23 518 540 518 540 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF658-207 - 617 1.8e-23 81.6 67.0 12 13 1.8e-07 0.00027 21.2 3.8 1 23 546 568 546 568 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF658-207 - 617 1.8e-23 81.6 67.0 13 13 2.6e-10 3.9e-07 30.2 0.4 1 23 574 596 574 596 0.98 Zinc finger, C2H2 type KRAB PF01352.27 42 ZNF658-207 - 617 3.9e-22 77.6 0.1 1 1 5.3e-25 8e-22 76.6 0.1 1 42 7 48 7 48 0.99 KRAB box zf-C2H2_4 PF13894.6 24 ZNF658-207 - 617 7.9e-07 29.4 66.3 1 10 1.2 1.8e+03 0.2 0.0 8 22 250 263 243 264 0.79 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF658-207 - 617 7.9e-07 29.4 66.3 2 10 8.7 1.3e+04 -2.4 0.1 6 24 279 296 277 296 0.54 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF658-207 - 617 7.9e-07 29.4 66.3 3 10 0.19 2.9e+02 2.7 0.1 5 22 329 346 325 348 0.84 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF658-207 - 617 7.9e-07 29.4 66.3 4 10 0.078 1.2e+02 4.0 1.9 6 23 389 406 386 407 0.89 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF658-207 - 617 7.9e-07 29.4 66.3 5 10 2 3e+03 -0.4 0.3 5 15 416 426 415 430 0.77 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF658-207 - 617 7.9e-07 29.4 66.3 6 10 5.4e-06 0.0081 16.9 1.4 1 23 440 462 440 463 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF658-207 - 617 7.9e-07 29.4 66.3 7 10 1.5 2.2e+03 -0.0 0.1 5 13 470 480 466 487 0.73 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF658-207 - 617 7.9e-07 29.4 66.3 8 10 8e-06 0.012 16.4 1.2 1 23 518 540 518 541 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF658-207 - 617 7.9e-07 29.4 66.3 9 10 0.00027 0.4 11.6 3.7 1 23 546 568 546 569 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF658-207 - 617 7.9e-07 29.4 66.3 10 10 2.6e-06 0.0039 17.9 0.3 1 23 574 596 574 597 0.93 C2H2-type zinc finger # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF658-207.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF658-207.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF658-207.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF658-207.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF658-207.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:11:44 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZNF660-201 - 331 2.7e-78 255.2 70.4 1 11 0.0014 0.7 10.4 0.1 12 25 47 60 41 61 0.82 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF660-201 - 331 2.7e-78 255.2 70.4 2 11 6.6e-12 3.4e-09 36.7 1.9 1 26 64 89 64 89 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF660-201 - 331 2.7e-78 255.2 70.4 3 11 2e-10 1e-07 32.0 0.2 1 25 92 116 92 116 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF660-201 - 331 2.7e-78 255.2 70.4 4 11 9.9e-10 5.1e-07 29.8 0.6 1 25 120 144 120 145 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF660-201 - 331 2.7e-78 255.2 70.4 5 11 3.6e-10 1.9e-07 31.2 0.4 2 25 149 172 148 173 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF660-201 - 331 2.7e-78 255.2 70.4 6 11 2.3e-08 1.2e-05 25.5 2.9 1 24 176 199 176 201 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF660-201 - 331 2.7e-78 255.2 70.4 7 11 3.6e-11 1.8e-08 34.4 0.2 4 24 207 227 205 228 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF660-201 - 331 2.7e-78 255.2 70.4 8 11 1.2e-09 6.2e-07 29.6 1.3 2 26 233 257 232 257 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF660-201 - 331 2.7e-78 255.2 70.4 9 11 4.8e-12 2.5e-09 37.1 0.5 1 25 260 284 260 285 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF660-201 - 331 2.7e-78 255.2 70.4 10 11 8.5e-10 4.4e-07 30.0 1.8 5 24 292 311 290 313 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF660-201 - 331 2.7e-78 255.2 70.4 11 11 0.27 1.4e+02 3.2 0.2 2 13 317 328 316 329 0.85 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZNF660-201 - 331 1.3e-63 208.0 68.3 1 10 6.4e-09 3.3e-06 27.3 0.1 1 23 50 72 50 72 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF660-201 - 331 1.3e-63 208.0 68.3 2 10 8.5e-10 4.4e-07 30.0 1.7 1 23 78 100 78 100 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF660-201 - 331 1.3e-63 208.0 68.3 3 10 1.2e-08 6e-06 26.4 1.1 1 23 106 128 106 128 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF660-201 - 331 1.3e-63 208.0 68.3 4 10 5.4e-09 2.8e-06 27.5 1.0 1 23 134 156 134 156 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF660-201 - 331 1.3e-63 208.0 68.3 5 10 2.3e-08 1.2e-05 25.5 0.8 1 23 162 184 162 184 0.95 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF660-201 - 331 1.3e-63 208.0 68.3 6 10 3.2e-05 0.016 15.6 2.1 1 23 190 212 190 212 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF660-201 - 331 1.3e-63 208.0 68.3 7 10 9.3e-07 0.00047 20.4 0.4 1 23 218 240 218 240 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF660-201 - 331 1.3e-63 208.0 68.3 8 10 2.4e-09 1.2e-06 28.6 0.5 1 23 246 268 246 268 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF660-201 - 331 1.3e-63 208.0 68.3 9 10 2.5e-08 1.3e-05 25.4 1.0 1 23 274 296 274 296 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF660-201 - 331 1.3e-63 208.0 68.3 10 10 1.6e-08 8.2e-06 26.0 1.4 1 23 302 324 302 324 0.99 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZNF660-201 - 331 9.5e-36 119.4 65.1 1 10 3.5e-05 0.018 15.8 0.1 1 23 50 72 50 73 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF660-201 - 331 9.5e-36 119.4 65.1 2 10 5.1e-05 0.026 15.3 1.6 1 23 78 100 78 101 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF660-201 - 331 9.5e-36 119.4 65.1 3 10 4.8e-06 0.0025 18.5 1.0 1 23 106 128 106 129 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF660-201 - 331 9.5e-36 119.4 65.1 4 10 1.3e-05 0.0066 17.2 1.0 1 23 134 156 134 157 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF660-201 - 331 9.5e-36 119.4 65.1 5 10 2e-05 0.01 16.6 0.7 1 23 162 184 162 185 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF660-201 - 331 9.5e-36 119.4 65.1 6 10 0.0004 0.2 12.6 1.2 1 23 190 212 190 213 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF660-201 - 331 9.5e-36 119.4 65.1 7 10 8.6e-05 0.044 14.6 0.4 1 23 218 240 218 241 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF660-201 - 331 9.5e-36 119.4 65.1 8 10 5.9e-06 0.003 18.2 0.3 1 23 246 268 246 269 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF660-201 - 331 9.5e-36 119.4 65.1 9 10 2.4e-05 0.012 16.3 0.7 1 23 274 296 274 297 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF660-201 - 331 9.5e-36 119.4 65.1 10 10 9.3e-06 0.0048 17.6 1.0 1 23 302 324 302 325 0.97 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF660-201 - 331 1e-19 70.0 76.5 1 10 0.00078 0.4 10.7 0.2 2 14 50 62 49 73 0.78 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF660-201 - 331 1e-19 70.0 76.5 2 10 0.0006 0.31 11.1 1.3 2 21 78 97 78 101 0.77 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF660-201 - 331 1e-19 70.0 76.5 3 10 0.001 0.52 10.4 1.2 2 12 106 116 106 116 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF660-201 - 331 1e-19 70.0 76.5 4 10 2.4e-05 0.012 15.6 1.4 2 24 134 156 133 159 0.88 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF660-201 - 331 1e-19 70.0 76.5 5 10 0.0013 0.66 10.1 1.4 2 26 162 186 162 187 0.92 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF660-201 - 331 1e-19 70.0 76.5 6 10 0.0098 5 7.2 2.7 1 10 189 198 189 201 0.92 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF660-201 - 331 1e-19 70.0 76.5 7 10 2.6e-05 0.013 15.4 0.4 2 26 218 242 218 243 0.90 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF660-201 - 331 1e-19 70.0 76.5 8 10 0.00011 0.055 13.5 0.3 2 22 246 266 246 270 0.83 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF660-201 - 331 1e-19 70.0 76.5 9 10 0.0026 1.3 9.1 3.7 2 12 274 284 274 300 0.81 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF660-201 - 331 1e-19 70.0 76.5 10 10 0.00027 0.14 12.2 2.4 2 25 302 325 302 327 0.92 C2H2-type zinc finger zf-C2H2_jaz PF12171.8 27 ZNF660-201 - 331 5.4e-18 64.8 37.8 1 10 0.0059 3 8.2 0.1 1 22 49 70 49 70 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF660-201 - 331 5.4e-18 64.8 37.8 2 10 0.00049 0.25 11.7 0.1 2 21 78 97 77 98 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF660-201 - 331 5.4e-18 64.8 37.8 3 10 0.011 5.4 7.4 0.1 2 20 106 124 105 125 0.90 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF660-201 - 331 5.4e-18 64.8 37.8 4 10 0.0099 5.1 7.5 0.0 2 20 134 152 133 152 0.86 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF660-201 - 331 5.4e-18 64.8 37.8 5 10 0.00011 0.057 13.7 0.0 2 22 162 182 161 182 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF660-201 - 331 5.4e-18 64.8 37.8 6 10 0.019 9.8 6.6 0.6 2 21 190 209 189 210 0.85 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF660-201 - 331 5.4e-18 64.8 37.8 7 10 0.0021 1.1 9.7 0.1 2 22 218 238 217 238 0.90 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF660-201 - 331 5.4e-18 64.8 37.8 8 10 0.0017 0.85 10.0 0.1 2 22 246 266 245 266 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF660-201 - 331 5.4e-18 64.8 37.8 9 10 0.024 12 6.3 0.2 2 24 274 296 273 298 0.88 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF660-201 - 331 5.4e-18 64.8 37.8 10 10 0.065 34 4.9 1.2 2 22 302 322 301 325 0.90 Zinc-finger double-stranded RNA-binding zf_UBZ PF18439.1 32 ZNF660-201 - 331 7.4e-16 57.4 39.2 1 10 0.00067 0.35 10.5 0.1 2 17 49 65 48 69 0.80 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF660-201 - 331 7.4e-16 57.4 39.2 2 10 0.0039 2 8.1 0.1 3 15 78 90 76 96 0.87 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF660-201 - 331 7.4e-16 57.4 39.2 3 10 0.00089 0.46 10.1 0.1 3 13 106 116 104 121 0.89 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF660-201 - 331 7.4e-16 57.4 39.2 4 10 0.0013 0.66 9.6 0.2 2 18 133 150 132 153 0.79 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF660-201 - 331 7.4e-16 57.4 39.2 5 10 0.0082 4.2 7.0 0.1 3 21 162 181 160 181 0.91 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF660-201 - 331 7.4e-16 57.4 39.2 6 10 0.048 25 4.6 0.8 3 11 190 198 188 209 0.82 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF660-201 - 331 7.4e-16 57.4 39.2 7 10 0.00024 0.12 11.9 0.2 3 21 218 237 216 237 0.92 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF660-201 - 331 7.4e-16 57.4 39.2 8 10 0.02 10 5.8 0.1 3 15 246 258 244 265 0.80 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF660-201 - 331 7.4e-16 57.4 39.2 9 10 0.013 6.5 6.4 0.1 3 15 274 286 272 292 0.84 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF660-201 - 331 7.4e-16 57.4 39.2 10 10 0.011 5.6 6.7 0.2 3 20 302 320 300 321 0.72 Ubiquitin-Binding Zinc Finger Zn-ribbon_8 PF09723.10 40 ZNF660-201 - 331 3.4e-15 55.9 48.5 1 9 5.9e-05 0.03 14.4 4.6 5 34 49 85 49 89 0.88 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF660-201 - 331 3.4e-15 55.9 48.5 2 9 0.00016 0.082 13.0 4.1 6 34 78 113 76 115 0.87 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF660-201 - 331 3.4e-15 55.9 48.5 3 9 8.8e-06 0.0045 17.1 3.0 6 38 106 145 104 147 0.93 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF660-201 - 331 3.4e-15 55.9 48.5 4 9 0.00013 0.064 13.4 3.4 6 38 134 173 132 173 0.87 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF660-201 - 331 3.4e-15 55.9 48.5 5 9 9.7e-05 0.05 13.7 2.6 6 34 162 197 161 200 0.93 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF660-201 - 331 3.4e-15 55.9 48.5 6 9 0.00011 0.055 13.6 4.7 6 35 218 254 217 259 0.88 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF660-201 - 331 3.4e-15 55.9 48.5 7 9 1.5e-05 0.0078 16.3 4.2 6 37 246 284 244 286 0.90 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF660-201 - 331 3.4e-15 55.9 48.5 8 9 3.1e-05 0.016 15.3 3.6 6 35 274 310 273 313 0.79 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF660-201 - 331 3.4e-15 55.9 48.5 9 9 0.039 20 5.4 0.4 6 15 302 311 300 327 0.81 Zinc ribbon domain XPA_N PF01286.18 32 ZNF660-201 - 331 1.2e-11 44.4 44.1 1 10 0.0027 1.4 9.0 0.0 3 14 51 62 49 67 0.90 XPA protein N-terminal XPA_N PF01286.18 32 ZNF660-201 - 331 1.2e-11 44.4 44.1 2 10 0.0024 1.2 9.2 0.4 3 14 79 90 77 91 0.90 XPA protein N-terminal XPA_N PF01286.18 32 ZNF660-201 - 331 1.2e-11 44.4 44.1 3 10 0.017 8.8 6.5 0.1 3 12 107 116 105 124 0.84 XPA protein N-terminal XPA_N PF01286.18 32 ZNF660-201 - 331 1.2e-11 44.4 44.1 4 10 0.0044 2.2 8.4 0.6 3 14 135 146 134 147 0.91 XPA protein N-terminal XPA_N PF01286.18 32 ZNF660-201 - 331 1.2e-11 44.4 44.1 5 10 0.0055 2.8 8.0 0.1 4 14 164 174 161 179 0.89 XPA protein N-terminal XPA_N PF01286.18 32 ZNF660-201 - 331 1.2e-11 44.4 44.1 6 10 0.4 2.1e+02 2.1 2.0 3 10 191 198 190 201 0.88 XPA protein N-terminal XPA_N PF01286.18 32 ZNF660-201 - 331 1.2e-11 44.4 44.1 7 10 0.0046 2.4 8.3 0.2 3 11 219 227 217 229 0.90 XPA protein N-terminal XPA_N PF01286.18 32 ZNF660-201 - 331 1.2e-11 44.4 44.1 8 10 0.011 5.7 7.1 0.1 3 12 247 256 245 258 0.89 XPA protein N-terminal XPA_N PF01286.18 32 ZNF660-201 - 331 1.2e-11 44.4 44.1 9 10 0.0085 4.4 7.4 0.2 3 12 275 284 273 287 0.87 XPA protein N-terminal XPA_N PF01286.18 32 ZNF660-201 - 331 1.2e-11 44.4 44.1 10 10 0.13 67 3.6 0.1 3 10 303 310 301 319 0.85 XPA protein N-terminal zf-C2H2_11 PF16622.5 29 ZNF660-201 - 331 1.7e-08 34.1 45.7 1 10 0.013 6.7 6.6 0.1 7 26 52 71 49 72 0.88 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF660-201 - 331 1.7e-08 34.1 45.7 2 10 0.0018 0.93 9.3 0.2 5 26 78 99 75 100 0.92 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF660-201 - 331 1.7e-08 34.1 45.7 3 10 0.0098 5 7.0 1.1 7 24 108 125 105 128 0.89 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF660-201 - 331 1.7e-08 34.1 45.7 4 10 0.0086 4.4 7.1 0.6 3 24 132 154 131 156 0.75 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF660-201 - 331 1.7e-08 34.1 45.7 5 10 0.0079 4 7.3 0.7 7 26 164 183 161 184 0.91 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF660-201 - 331 1.7e-08 34.1 45.7 6 10 1 5.2e+02 0.5 1.2 5 11 190 196 188 203 0.86 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF660-201 - 331 1.7e-08 34.1 45.7 7 10 0.48 2.5e+02 1.6 0.0 7 23 220 236 217 239 0.78 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF660-201 - 331 1.7e-08 34.1 45.7 8 10 0.0006 0.31 10.8 0.0 5 23 246 264 243 268 0.83 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF660-201 - 331 1.7e-08 34.1 45.7 9 10 0.039 20 5.1 0.1 5 20 274 291 271 296 0.83 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF660-201 - 331 1.7e-08 34.1 45.7 10 10 0.046 23 4.8 0.3 5 18 302 317 299 320 0.74 zinc-finger C2H2-type DZR PF12773.7 49 ZNF660-201 - 331 9.8e-08 31.9 45.6 1 1 0.00023 0.12 12.4 2.0 13 37 274 310 264 317 0.87 Double zinc ribbon zinc_ribbon_15 PF17032.5 86 ZNF660-201 - 331 5.1e-07 30.4 45.9 1 7 0.16 84 4.0 1.0 64 78 39 62 10 68 0.62 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF660-201 - 331 5.1e-07 30.4 45.9 2 7 0.00074 0.38 11.5 2.7 31 79 43 91 39 96 0.84 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF660-201 - 331 5.1e-07 30.4 45.9 3 7 0.003 1.5 9.6 1.3 38 76 106 144 97 148 0.84 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF660-201 - 331 5.1e-07 30.4 45.9 4 7 0.00058 0.3 11.9 4.0 30 78 154 202 149 208 0.86 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF660-201 - 331 5.1e-07 30.4 45.9 5 7 0.00078 0.4 11.5 1.7 31 78 211 258 205 261 0.85 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF660-201 - 331 5.1e-07 30.4 45.9 6 7 0.00052 0.27 12.0 2.5 31 76 267 312 261 317 0.87 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF660-201 - 331 5.1e-07 30.4 45.9 7 7 0.038 20 6.0 0.4 29 61 293 325 284 329 0.75 zinc-ribbon family # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF660-201.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF660-201.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF660-201.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF660-201.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF660-201.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:11:44 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF660-202.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF660-202.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF660-202.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF660-202.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF660-202.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:11:44 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF660-203.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF660-203.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF660-203.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF660-203.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF660-203.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:11:45 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF660-204.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF660-204.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF660-204.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF660-204.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF660-204.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:11:45 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZNF662-201 - 452 1.8e-60 198.8 55.5 1 9 0.088 93 3.7 0.3 11 25 213 228 205 229 0.69 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF662-201 - 452 1.8e-60 198.8 55.5 2 9 3.6e-07 0.00038 20.7 0.7 2 25 233 256 232 257 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF662-201 - 452 1.8e-60 198.8 55.5 3 9 8.6e-09 9e-06 25.9 1.6 4 25 263 284 260 284 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF662-201 - 452 1.8e-60 198.8 55.5 4 9 1.5e-12 1.6e-09 37.8 0.2 1 25 288 312 288 313 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF662-201 - 452 1.8e-60 198.8 55.5 5 9 1.8e-12 1.9e-09 37.5 1.0 1 26 316 341 316 341 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF662-201 - 452 1.8e-60 198.8 55.5 6 9 1.6e-11 1.7e-08 34.5 0.4 1 24 344 367 344 367 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF662-201 - 452 1.8e-60 198.8 55.5 7 9 1.4e-10 1.5e-07 31.5 1.9 1 24 372 395 372 397 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF662-201 - 452 1.8e-60 198.8 55.5 8 9 1.4e-11 1.5e-08 34.7 0.6 1 25 400 424 400 425 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF662-201 - 452 1.8e-60 198.8 55.5 9 9 0.0028 3 8.4 0.2 2 17 429 444 429 446 0.91 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZNF662-201 - 452 1.5e-40 135.4 58.0 1 8 6.4e-07 0.00068 20.0 1.3 1 23 218 240 218 240 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF662-201 - 452 1.5e-40 135.4 58.0 2 8 4.3e-05 0.046 14.2 3.0 3 23 248 268 246 268 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF662-201 - 452 1.5e-40 135.4 58.0 3 8 2.5e-06 0.0026 18.1 0.1 1 23 274 296 274 296 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF662-201 - 452 1.5e-40 135.4 58.0 4 8 1.3e-08 1.4e-05 25.3 0.6 1 23 302 324 302 324 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF662-201 - 452 1.5e-40 135.4 58.0 5 8 1.3e-09 1.3e-06 28.5 1.1 1 23 330 352 330 352 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF662-201 - 452 1.5e-40 135.4 58.0 6 8 1.9e-06 0.0021 18.4 0.2 1 23 358 380 358 380 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF662-201 - 452 1.5e-40 135.4 58.0 7 8 1.3e-05 0.014 15.8 6.0 1 23 386 408 386 408 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF662-201 - 452 1.5e-40 135.4 58.0 8 8 8.4e-10 8.9e-07 29.0 0.8 1 23 414 436 414 436 0.99 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZNF662-201 - 452 1.5e-23 81.5 55.3 1 8 1.1e-05 0.012 16.4 0.9 1 23 218 240 218 241 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF662-201 - 452 1.5e-23 81.5 55.3 2 8 0.0053 5.6 8.1 2.9 2 23 247 268 246 269 0.89 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF662-201 - 452 1.5e-23 81.5 55.3 3 8 0.0035 3.6 8.7 0.3 1 23 274 296 274 297 0.86 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF662-201 - 452 1.5e-23 81.5 55.3 4 8 5.3e-06 0.0056 17.4 0.5 1 23 302 324 302 325 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF662-201 - 452 1.5e-23 81.5 55.3 5 8 5.8e-07 0.00061 20.4 0.7 1 23 330 352 330 353 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF662-201 - 452 1.5e-23 81.5 55.3 6 8 0.00038 0.4 11.7 0.3 1 23 358 380 358 381 0.86 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF662-201 - 452 1.5e-23 81.5 55.3 7 8 3e-05 0.032 15.1 4.9 1 23 386 408 386 409 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF662-201 - 452 1.5e-23 81.5 55.3 8 8 7.1e-06 0.0075 17.0 0.4 1 23 414 436 414 437 0.89 C2H2-type zinc finger KRAB PF01352.27 42 ZNF662-201 - 452 1.8e-22 78.7 0.0 1 1 2.9e-25 3.1e-22 77.9 0.0 1 42 32 73 32 73 0.99 KRAB box zf-C2H2_6 PF13912.6 27 ZNF662-201 - 452 5e-09 35.9 47.9 1 8 0.57 6e+02 0.6 3.3 2 11 218 227 217 228 0.90 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF662-201 - 452 5e-09 35.9 47.9 2 8 0.001 1.1 9.4 0.4 1 12 245 256 245 256 0.92 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF662-201 - 452 5e-09 35.9 47.9 3 8 0.0049 5.2 7.2 0.2 2 12 274 284 274 296 0.84 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF662-201 - 452 5e-09 35.9 47.9 4 8 4.1e-05 0.043 13.8 1.1 2 24 302 324 302 327 0.90 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF662-201 - 452 5e-09 35.9 47.9 5 8 0.00012 0.13 12.3 0.3 2 20 330 348 330 354 0.77 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF662-201 - 452 5e-09 35.9 47.9 6 8 0.042 44 4.2 0.2 2 11 358 367 358 368 0.95 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF662-201 - 452 5e-09 35.9 47.9 7 8 0.0082 8.7 6.5 0.9 2 11 386 395 386 395 0.98 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF662-201 - 452 5e-09 35.9 47.9 8 8 0.00054 0.57 10.3 0.6 2 24 414 436 414 438 0.95 C2H2-type zinc finger Zn-ribbon_8 PF09723.10 40 ZNF662-201 - 452 7.5e-08 32.4 44.0 1 7 0.0039 4.1 7.6 9.1 6 34 218 253 217 256 0.91 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF662-201 - 452 7.5e-08 32.4 44.0 2 7 0.003 3.1 8.0 5.0 6 34 246 281 244 284 0.90 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF662-201 - 452 7.5e-08 32.4 44.0 3 7 0.0013 1.4 9.1 4.7 6 34 274 309 272 312 0.92 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF662-201 - 452 7.5e-08 32.4 44.0 4 7 8.7e-06 0.0092 16.1 4.1 6 38 302 341 301 343 0.91 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF662-201 - 452 7.5e-08 32.4 44.0 5 7 8.5e-06 0.009 16.1 3.8 6 34 330 365 329 366 0.94 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF662-201 - 452 7.5e-08 32.4 44.0 6 7 6.5e-05 0.068 13.3 2.8 6 34 358 393 357 398 0.92 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF662-201 - 452 7.5e-08 32.4 44.0 7 7 0.00088 0.93 9.7 0.3 6 22 414 436 413 446 0.69 Zinc ribbon domain # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF662-201.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF662-201.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF662-201.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF662-201.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF662-201.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:11:46 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF662-202.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF662-202.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF662-202.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF662-202.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF662-202.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:11:46 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF662-203.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF662-203.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF662-203.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF662-203.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF662-203.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:11:47 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZNF662-204 - 426 9.4e-61 199.7 55.5 1 9 0.082 87 3.8 0.3 11 25 187 202 179 203 0.69 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF662-204 - 426 9.4e-61 199.7 55.5 2 9 3.4e-07 0.00036 20.8 0.7 2 25 207 230 206 231 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF662-204 - 426 9.4e-61 199.7 55.5 3 9 8e-09 8.4e-06 26.0 1.6 4 25 237 258 234 258 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF662-204 - 426 9.4e-61 199.7 55.5 4 9 1.4e-12 1.5e-09 37.9 0.2 1 25 262 286 262 287 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF662-204 - 426 9.4e-61 199.7 55.5 5 9 1.7e-12 1.7e-09 37.6 1.0 1 26 290 315 290 315 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF662-204 - 426 9.4e-61 199.7 55.5 6 9 1.5e-11 1.6e-08 34.6 0.4 1 24 318 341 318 341 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF662-204 - 426 9.4e-61 199.7 55.5 7 9 1.3e-10 1.4e-07 31.6 1.9 1 24 346 369 346 371 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF662-204 - 426 9.4e-61 199.7 55.5 8 9 1.3e-11 1.4e-08 34.8 0.6 1 25 374 398 374 399 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF662-204 - 426 9.4e-61 199.7 55.5 9 9 0.0026 2.8 8.5 0.2 2 17 403 418 403 420 0.91 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZNF662-204 - 426 8.3e-41 136.2 58.0 1 8 6e-07 0.00063 20.1 1.3 1 23 192 214 192 214 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF662-204 - 426 8.3e-41 136.2 58.0 2 8 4e-05 0.042 14.3 3.0 3 23 222 242 220 242 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF662-204 - 426 8.3e-41 136.2 58.0 3 8 2.3e-06 0.0024 18.2 0.1 1 23 248 270 248 270 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF662-204 - 426 8.3e-41 136.2 58.0 4 8 1.3e-08 1.3e-05 25.3 0.6 1 23 276 298 276 298 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF662-204 - 426 8.3e-41 136.2 58.0 5 8 1.2e-09 1.2e-06 28.6 1.1 1 23 304 326 304 326 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF662-204 - 426 8.3e-41 136.2 58.0 6 8 1.8e-06 0.0019 18.5 0.2 1 23 332 354 332 354 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF662-204 - 426 8.3e-41 136.2 58.0 7 8 1.2e-05 0.013 15.9 6.0 1 23 360 382 360 382 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF662-204 - 426 8.3e-41 136.2 58.0 8 8 7.9e-10 8.3e-07 29.1 0.8 1 23 388 410 388 410 0.99 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZNF662-204 - 426 7.4e-24 82.4 55.3 1 8 1e-05 0.011 16.5 0.9 1 23 192 214 192 215 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF662-204 - 426 7.4e-24 82.4 55.3 2 8 0.0049 5.2 8.2 2.9 2 23 221 242 220 243 0.89 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF662-204 - 426 7.4e-24 82.4 55.3 3 8 0.0032 3.4 8.8 0.3 1 23 248 270 248 271 0.86 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF662-204 - 426 7.4e-24 82.4 55.3 4 8 4.9e-06 0.0052 17.5 0.5 1 23 276 298 276 299 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF662-204 - 426 7.4e-24 82.4 55.3 5 8 5.4e-07 0.00056 20.5 0.7 1 23 304 326 304 327 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF662-204 - 426 7.4e-24 82.4 55.3 6 8 0.00035 0.37 11.8 0.3 1 23 332 354 332 355 0.86 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF662-204 - 426 7.4e-24 82.4 55.3 7 8 2.8e-05 0.029 15.2 4.9 1 23 360 382 360 383 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF662-204 - 426 7.4e-24 82.4 55.3 8 8 6.6e-06 0.0069 17.1 0.4 1 23 388 410 388 411 0.89 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF662-204 - 426 2.8e-09 36.7 47.9 1 8 0.54 5.7e+02 0.7 3.3 2 11 192 201 191 202 0.90 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF662-204 - 426 2.8e-09 36.7 47.9 2 8 0.00094 0.99 9.5 0.4 1 12 219 230 219 230 0.92 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF662-204 - 426 2.8e-09 36.7 47.9 3 8 0.0046 4.8 7.3 0.2 2 12 248 258 248 270 0.84 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF662-204 - 426 2.8e-09 36.7 47.9 4 8 3.8e-05 0.04 13.9 1.1 2 24 276 298 276 301 0.90 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF662-204 - 426 2.8e-09 36.7 47.9 5 8 0.00012 0.12 12.4 0.3 2 20 304 322 304 328 0.77 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF662-204 - 426 2.8e-09 36.7 47.9 6 8 0.039 41 4.3 0.2 2 11 332 341 332 342 0.95 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF662-204 - 426 2.8e-09 36.7 47.9 7 8 0.0077 8.1 6.6 0.9 2 11 360 369 360 369 0.98 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF662-204 - 426 2.8e-09 36.7 47.9 8 8 0.0005 0.53 10.4 0.6 2 24 388 410 388 412 0.95 C2H2-type zinc finger Zn-ribbon_8 PF09723.10 40 ZNF662-204 - 426 4.6e-08 33.0 44.1 1 7 0.0035 3.7 7.8 9.2 6 34 192 227 191 232 0.91 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF662-204 - 426 4.6e-08 33.0 44.1 2 7 0.0032 3.4 7.9 5.2 6 34 220 255 218 258 0.90 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF662-204 - 426 4.6e-08 33.0 44.1 3 7 0.001 1.1 9.5 4.6 6 34 248 283 246 288 0.91 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF662-204 - 426 4.6e-08 33.0 44.1 4 7 7.4e-06 0.0078 16.3 4.0 6 38 276 315 275 317 0.91 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF662-204 - 426 4.6e-08 33.0 44.1 5 7 4.6e-06 0.0049 17.0 3.3 6 34 304 339 303 342 0.94 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF662-204 - 426 4.6e-08 33.0 44.1 6 7 6.1e-05 0.064 13.4 2.8 6 34 332 367 331 372 0.92 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF662-204 - 426 4.6e-08 33.0 44.1 7 7 0.00082 0.87 9.8 0.3 6 22 388 410 387 420 0.69 Zinc ribbon domain # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF662-204.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF662-204.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF662-204.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF662-204.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF662-204.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:11:47 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZNF662-205 - 318 4.4e-62 203.9 55.5 1 9 0.068 61 4.3 0.3 11 25 79 94 71 95 0.69 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF662-205 - 318 4.4e-62 203.9 55.5 2 9 2.8e-07 0.00025 21.3 0.7 2 25 99 122 98 123 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF662-205 - 318 4.4e-62 203.9 55.5 3 9 6.5e-09 5.8e-06 26.5 1.6 4 25 129 150 126 150 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF662-205 - 318 4.4e-62 203.9 55.5 4 9 1.1e-12 1e-09 38.4 0.2 1 25 154 178 154 179 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF662-205 - 318 4.4e-62 203.9 55.5 5 9 1.3e-12 1.2e-09 38.1 1.0 1 26 182 207 182 207 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF662-205 - 318 4.4e-62 203.9 55.5 6 9 1.2e-11 1.1e-08 35.1 0.4 1 24 210 233 210 233 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF662-205 - 318 4.4e-62 203.9 55.5 7 9 1.1e-10 9.6e-08 32.1 1.9 1 24 238 261 238 263 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF662-205 - 318 4.4e-62 203.9 55.5 8 9 1.1e-11 9.5e-09 35.3 0.6 1 25 266 290 266 291 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF662-205 - 318 4.4e-62 203.9 55.5 9 9 0.0022 2 9.0 0.2 2 17 295 310 295 312 0.91 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZNF662-205 - 318 4.6e-42 140.2 58.0 1 8 4.9e-07 0.00044 20.6 1.3 1 23 84 106 84 106 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF662-205 - 318 4.6e-42 140.2 58.0 2 8 3.3e-05 0.03 14.8 3.0 3 23 114 134 112 134 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF662-205 - 318 4.6e-42 140.2 58.0 3 8 1.9e-06 0.0017 18.7 0.1 1 23 140 162 140 162 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF662-205 - 318 4.6e-42 140.2 58.0 4 8 1e-08 9.1e-06 25.8 0.6 1 23 168 190 168 190 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF662-205 - 318 4.6e-42 140.2 58.0 5 8 9.7e-10 8.7e-07 29.1 1.1 1 23 196 218 196 218 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF662-205 - 318 4.6e-42 140.2 58.0 6 8 1.5e-06 0.0013 19.0 0.2 1 23 224 246 224 246 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF662-205 - 318 4.6e-42 140.2 58.0 7 8 1e-05 0.0091 16.4 6.0 1 23 252 274 252 274 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF662-205 - 318 4.6e-42 140.2 58.0 8 8 6.4e-10 5.7e-07 29.6 0.8 1 23 280 302 280 302 0.99 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZNF662-205 - 318 4.4e-25 86.2 55.3 1 8 8.3e-06 0.0075 17.0 0.9 1 23 84 106 84 107 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF662-205 - 318 4.4e-25 86.2 55.3 2 8 0.004 3.6 8.7 2.9 2 23 113 134 112 135 0.89 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF662-205 - 318 4.4e-25 86.2 55.3 3 8 0.0026 2.3 9.3 0.3 1 23 140 162 140 163 0.86 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF662-205 - 318 4.4e-25 86.2 55.3 4 8 4e-06 0.0036 18.0 0.5 1 23 168 190 168 191 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF662-205 - 318 4.4e-25 86.2 55.3 5 8 4.3e-07 0.00039 21.0 0.7 1 23 196 218 196 219 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF662-205 - 318 4.4e-25 86.2 55.3 6 8 0.00028 0.25 12.3 0.3 1 23 224 246 224 247 0.86 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF662-205 - 318 4.4e-25 86.2 55.3 7 8 2.3e-05 0.02 15.7 4.9 1 23 252 274 252 275 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF662-205 - 318 4.4e-25 86.2 55.3 8 8 5.3e-06 0.0048 17.6 0.4 1 23 280 302 280 303 0.89 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF662-205 - 318 1.7e-10 40.7 47.9 1 8 0.45 4.1e+02 1.1 3.3 2 11 84 93 83 94 0.90 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF662-205 - 318 1.7e-10 40.7 47.9 2 8 0.0008 0.71 9.9 0.4 1 12 111 122 111 122 0.92 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF662-205 - 318 1.7e-10 40.7 47.9 3 8 0.0038 3.4 7.8 0.2 2 12 140 150 140 162 0.84 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF662-205 - 318 1.7e-10 40.7 47.9 4 8 3.1e-05 0.028 14.4 1.1 2 24 168 190 168 193 0.90 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF662-205 - 318 1.7e-10 40.7 47.9 5 8 9.5e-05 0.085 12.9 0.3 2 20 196 214 196 220 0.77 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF662-205 - 318 1.7e-10 40.7 47.9 6 8 0.033 29 4.8 0.2 2 11 224 233 224 234 0.95 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF662-205 - 318 1.7e-10 40.7 47.9 7 8 0.0065 5.8 7.0 0.9 2 11 252 261 252 261 0.98 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF662-205 - 318 1.7e-10 40.7 47.9 8 8 0.00041 0.37 10.9 0.6 2 24 280 302 280 304 0.95 C2H2-type zinc finger Zn-ribbon_8 PF09723.10 40 ZNF662-205 - 318 1.2e-08 34.9 44.9 1 7 0.0025 2.2 8.5 9.0 6 34 84 119 83 124 0.91 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF662-205 - 318 1.2e-08 34.9 44.9 2 7 0.0015 1.4 9.1 4.6 6 34 112 147 111 152 0.90 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF662-205 - 318 1.2e-08 34.9 44.9 3 7 0.0011 1 9.5 5.1 6 34 140 175 137 179 0.92 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF662-205 - 318 1.2e-08 34.9 44.9 4 7 6.2e-06 0.0055 16.8 4.0 6 38 168 207 167 209 0.91 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF662-205 - 318 1.2e-08 34.9 44.9 5 7 5.5e-06 0.0049 16.9 3.7 6 34 196 231 195 233 0.94 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF662-205 - 318 1.2e-08 34.9 44.9 6 7 4.6e-05 0.041 14.0 2.7 6 34 224 259 223 262 0.92 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF662-205 - 318 1.2e-08 34.9 44.9 7 7 0.00067 0.6 10.3 0.3 6 22 280 302 279 312 0.69 Zinc ribbon domain zf_UBZ PF18439.1 32 ZNF662-205 - 318 1e-07 31.4 35.3 1 8 8.5e-05 0.076 12.6 2.0 3 21 84 103 83 103 0.95 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF662-205 - 318 1e-07 31.4 35.3 2 8 0.035 31 4.3 0.1 3 13 112 122 110 126 0.85 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF662-205 - 318 1e-07 31.4 35.3 3 8 0.17 1.5e+02 2.1 0.1 3 11 140 148 138 151 0.84 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF662-205 - 318 1e-07 31.4 35.3 4 8 0.00096 0.86 9.3 0.2 3 21 168 187 166 187 0.92 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF662-205 - 318 1e-07 31.4 35.3 5 8 0.00067 0.6 9.7 0.1 3 20 196 214 194 215 0.79 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF662-205 - 318 1e-07 31.4 35.3 6 8 0.021 19 5.0 0.1 3 20 224 242 222 243 0.72 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF662-205 - 318 1e-07 31.4 35.3 7 8 0.16 1.4e+02 2.1 0.9 4 12 253 261 251 266 0.88 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF662-205 - 318 1e-07 31.4 35.3 8 8 0.0082 7.4 6.3 0.1 3 15 280 292 278 298 0.87 Ubiquitin-Binding Zinc Finger # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF662-205.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF662-205.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF662-205.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF662-205.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF662-205.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:11:48 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZNF664-201 - 261 9.4e-62 202.9 78.3 1 10 0.025 23 5.6 0.3 14 25 2 13 1 14 0.88 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF664-201 - 261 9.4e-62 202.9 78.3 2 10 2.5e-08 2.3e-05 24.6 4.2 2 24 18 40 17 42 0.90 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF664-201 - 261 9.4e-62 202.9 78.3 3 10 2.9e-08 2.7e-05 24.4 0.4 6 26 48 70 45 70 0.87 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF664-201 - 261 9.4e-62 202.9 78.3 4 10 1.8e-11 1.7e-08 34.5 2.8 2 25 74 97 73 97 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF664-201 - 261 9.4e-62 202.9 78.3 5 10 1.2e-11 1.1e-08 35.1 0.3 1 26 101 126 101 126 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF664-201 - 261 9.4e-62 202.9 78.3 6 10 1.4e-10 1.4e-07 31.7 3.8 4 26 132 154 129 154 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF664-201 - 261 9.4e-62 202.9 78.3 7 10 1e-10 9.8e-08 32.1 2.4 5 25 161 181 158 182 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF664-201 - 261 9.4e-62 202.9 78.3 8 10 3.2e-08 3e-05 24.2 1.5 5 25 189 209 188 210 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF664-201 - 261 9.4e-62 202.9 78.3 9 10 2.1e-11 2e-08 34.3 0.7 5 25 217 237 216 238 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF664-201 - 261 9.4e-62 202.9 78.3 10 10 0.11 1e+02 3.6 0.9 5 14 245 254 244 256 0.88 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZNF664-201 - 261 1.6e-46 154.2 82.5 1 9 7.9e-06 0.0075 16.7 1.0 1 23 3 25 3 25 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF664-201 - 261 1.6e-46 154.2 82.5 2 9 0.00022 0.21 12.1 4.5 1 23 31 53 31 53 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF664-201 - 261 1.6e-46 154.2 82.5 3 9 3.9e-08 3.7e-05 23.9 1.8 1 23 59 81 59 81 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF664-201 - 261 1.6e-46 154.2 82.5 4 9 4.6e-08 4.4e-05 23.7 1.3 1 23 87 109 87 109 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF664-201 - 261 1.6e-46 154.2 82.5 5 9 4.8e-09 4.5e-06 26.8 1.6 1 23 115 137 115 137 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF664-201 - 261 1.6e-46 154.2 82.5 6 9 8e-08 7.6e-05 23.0 4.6 1 23 143 165 143 165 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF664-201 - 261 1.6e-46 154.2 82.5 7 9 8.1e-09 7.6e-06 26.1 2.3 1 23 171 193 171 193 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF664-201 - 261 1.6e-46 154.2 82.5 8 9 2.7e-08 2.5e-05 24.4 3.9 1 23 199 221 199 221 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF664-201 - 261 1.6e-46 154.2 82.5 9 9 1.2e-08 1.1e-05 25.6 1.6 1 23 227 249 227 249 0.99 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZNF664-201 - 261 2.5e-23 80.7 80.1 1 9 0.0001 0.098 13.6 0.8 1 23 3 25 3 26 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF664-201 - 261 2.5e-23 80.7 80.1 2 9 0.0031 2.9 9.0 3.7 1 23 31 53 31 54 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF664-201 - 261 2.5e-23 80.7 80.1 3 9 3e-07 0.00028 21.5 0.7 1 23 59 81 59 82 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF664-201 - 261 2.5e-23 80.7 80.1 4 9 7.6e-05 0.072 14.0 1.4 1 23 87 109 87 110 0.89 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF664-201 - 261 2.5e-23 80.7 80.1 5 9 1.8e-05 0.017 15.9 1.6 1 23 115 137 115 138 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF664-201 - 261 2.5e-23 80.7 80.1 6 9 0.0011 1.1 10.3 4.3 1 23 143 165 143 166 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF664-201 - 261 2.5e-23 80.7 80.1 7 9 4.7e-05 0.044 14.6 2.5 1 23 171 193 171 194 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF664-201 - 261 2.5e-23 80.7 80.1 8 9 0.00018 0.17 12.8 4.0 1 23 199 221 199 222 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF664-201 - 261 2.5e-23 80.7 80.1 9 9 1.4e-05 0.013 16.3 1.8 1 23 227 249 227 250 0.95 C2H2-type zinc finger XPA_N PF01286.18 32 ZNF664-201 - 261 1.9e-07 31.0 42.7 1 9 4.7 4.4e+03 -2.2 0.1 21 26 4 9 2 10 0.53 XPA protein N-terminal XPA_N PF01286.18 32 ZNF664-201 - 261 1.9e-07 31.0 42.7 2 9 0.015 15 5.8 0.4 3 11 32 40 30 44 0.88 XPA protein N-terminal XPA_N PF01286.18 32 ZNF664-201 - 261 1.9e-07 31.0 42.7 3 9 0.0063 5.9 7.0 0.3 3 13 60 70 59 74 0.89 XPA protein N-terminal XPA_N PF01286.18 32 ZNF664-201 - 261 1.9e-07 31.0 42.7 4 9 0.0054 5.1 7.2 0.1 3 14 88 99 86 104 0.85 XPA protein N-terminal XPA_N PF01286.18 32 ZNF664-201 - 261 1.9e-07 31.0 42.7 5 9 0.0091 8.6 6.5 0.1 3 14 116 127 114 128 0.91 XPA protein N-terminal XPA_N PF01286.18 32 ZNF664-201 - 261 1.9e-07 31.0 42.7 6 9 0.002 1.9 8.6 0.3 3 12 144 153 142 158 0.88 XPA protein N-terminal XPA_N PF01286.18 32 ZNF664-201 - 261 1.9e-07 31.0 42.7 7 9 0.0016 1.5 8.9 0.3 3 14 172 183 170 184 0.91 XPA protein N-terminal XPA_N PF01286.18 32 ZNF664-201 - 261 1.9e-07 31.0 42.7 8 9 0.12 1.1e+02 2.9 0.9 3 14 200 211 198 212 0.89 XPA protein N-terminal XPA_N PF01286.18 32 ZNF664-201 - 261 1.9e-07 31.0 42.7 9 9 0.0003 0.28 11.3 0.7 3 14 228 239 226 240 0.92 XPA protein N-terminal # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF664-201.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF664-201.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF664-201.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF664-201.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF664-201.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:11:48 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZNF664-202 - 261 9.4e-62 202.9 78.3 1 10 0.025 23 5.6 0.3 14 25 2 13 1 14 0.88 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF664-202 - 261 9.4e-62 202.9 78.3 2 10 2.5e-08 2.3e-05 24.6 4.2 2 24 18 40 17 42 0.90 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF664-202 - 261 9.4e-62 202.9 78.3 3 10 2.9e-08 2.7e-05 24.4 0.4 6 26 48 70 45 70 0.87 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF664-202 - 261 9.4e-62 202.9 78.3 4 10 1.8e-11 1.7e-08 34.5 2.8 2 25 74 97 73 97 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF664-202 - 261 9.4e-62 202.9 78.3 5 10 1.2e-11 1.1e-08 35.1 0.3 1 26 101 126 101 126 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF664-202 - 261 9.4e-62 202.9 78.3 6 10 1.4e-10 1.4e-07 31.7 3.8 4 26 132 154 129 154 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF664-202 - 261 9.4e-62 202.9 78.3 7 10 1e-10 9.8e-08 32.1 2.4 5 25 161 181 158 182 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF664-202 - 261 9.4e-62 202.9 78.3 8 10 3.2e-08 3e-05 24.2 1.5 5 25 189 209 188 210 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF664-202 - 261 9.4e-62 202.9 78.3 9 10 2.1e-11 2e-08 34.3 0.7 5 25 217 237 216 238 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF664-202 - 261 9.4e-62 202.9 78.3 10 10 0.11 1e+02 3.6 0.9 5 14 245 254 244 256 0.88 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZNF664-202 - 261 1.6e-46 154.2 82.5 1 9 7.9e-06 0.0075 16.7 1.0 1 23 3 25 3 25 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF664-202 - 261 1.6e-46 154.2 82.5 2 9 0.00022 0.21 12.1 4.5 1 23 31 53 31 53 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF664-202 - 261 1.6e-46 154.2 82.5 3 9 3.9e-08 3.7e-05 23.9 1.8 1 23 59 81 59 81 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF664-202 - 261 1.6e-46 154.2 82.5 4 9 4.6e-08 4.4e-05 23.7 1.3 1 23 87 109 87 109 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF664-202 - 261 1.6e-46 154.2 82.5 5 9 4.8e-09 4.5e-06 26.8 1.6 1 23 115 137 115 137 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF664-202 - 261 1.6e-46 154.2 82.5 6 9 8e-08 7.6e-05 23.0 4.6 1 23 143 165 143 165 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF664-202 - 261 1.6e-46 154.2 82.5 7 9 8.1e-09 7.6e-06 26.1 2.3 1 23 171 193 171 193 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF664-202 - 261 1.6e-46 154.2 82.5 8 9 2.7e-08 2.5e-05 24.4 3.9 1 23 199 221 199 221 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF664-202 - 261 1.6e-46 154.2 82.5 9 9 1.2e-08 1.1e-05 25.6 1.6 1 23 227 249 227 249 0.99 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZNF664-202 - 261 2.5e-23 80.7 80.1 1 9 0.0001 0.098 13.6 0.8 1 23 3 25 3 26 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF664-202 - 261 2.5e-23 80.7 80.1 2 9 0.0031 2.9 9.0 3.7 1 23 31 53 31 54 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF664-202 - 261 2.5e-23 80.7 80.1 3 9 3e-07 0.00028 21.5 0.7 1 23 59 81 59 82 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF664-202 - 261 2.5e-23 80.7 80.1 4 9 7.6e-05 0.072 14.0 1.4 1 23 87 109 87 110 0.89 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF664-202 - 261 2.5e-23 80.7 80.1 5 9 1.8e-05 0.017 15.9 1.6 1 23 115 137 115 138 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF664-202 - 261 2.5e-23 80.7 80.1 6 9 0.0011 1.1 10.3 4.3 1 23 143 165 143 166 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF664-202 - 261 2.5e-23 80.7 80.1 7 9 4.7e-05 0.044 14.6 2.5 1 23 171 193 171 194 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF664-202 - 261 2.5e-23 80.7 80.1 8 9 0.00018 0.17 12.8 4.0 1 23 199 221 199 222 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF664-202 - 261 2.5e-23 80.7 80.1 9 9 1.4e-05 0.013 16.3 1.8 1 23 227 249 227 250 0.95 C2H2-type zinc finger XPA_N PF01286.18 32 ZNF664-202 - 261 1.9e-07 31.0 42.7 1 9 4.7 4.4e+03 -2.2 0.1 21 26 4 9 2 10 0.53 XPA protein N-terminal XPA_N PF01286.18 32 ZNF664-202 - 261 1.9e-07 31.0 42.7 2 9 0.015 15 5.8 0.4 3 11 32 40 30 44 0.88 XPA protein N-terminal XPA_N PF01286.18 32 ZNF664-202 - 261 1.9e-07 31.0 42.7 3 9 0.0063 5.9 7.0 0.3 3 13 60 70 59 74 0.89 XPA protein N-terminal XPA_N PF01286.18 32 ZNF664-202 - 261 1.9e-07 31.0 42.7 4 9 0.0054 5.1 7.2 0.1 3 14 88 99 86 104 0.85 XPA protein N-terminal XPA_N PF01286.18 32 ZNF664-202 - 261 1.9e-07 31.0 42.7 5 9 0.0091 8.6 6.5 0.1 3 14 116 127 114 128 0.91 XPA protein N-terminal XPA_N PF01286.18 32 ZNF664-202 - 261 1.9e-07 31.0 42.7 6 9 0.002 1.9 8.6 0.3 3 12 144 153 142 158 0.88 XPA protein N-terminal XPA_N PF01286.18 32 ZNF664-202 - 261 1.9e-07 31.0 42.7 7 9 0.0016 1.5 8.9 0.3 3 14 172 183 170 184 0.91 XPA protein N-terminal XPA_N PF01286.18 32 ZNF664-202 - 261 1.9e-07 31.0 42.7 8 9 0.12 1.1e+02 2.9 0.9 3 14 200 211 198 212 0.89 XPA protein N-terminal XPA_N PF01286.18 32 ZNF664-202 - 261 1.9e-07 31.0 42.7 9 9 0.0003 0.28 11.3 0.7 3 14 228 239 226 240 0.92 XPA protein N-terminal # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF664-202.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF664-202.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF664-202.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF664-202.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF664-202.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:11:48 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF664-203.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF664-203.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF664-203.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF664-203.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF664-203.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:11:49 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZNF664-204 - 261 9.4e-62 202.9 78.3 1 10 0.025 23 5.6 0.3 14 25 2 13 1 14 0.88 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF664-204 - 261 9.4e-62 202.9 78.3 2 10 2.5e-08 2.3e-05 24.6 4.2 2 24 18 40 17 42 0.90 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF664-204 - 261 9.4e-62 202.9 78.3 3 10 2.9e-08 2.7e-05 24.4 0.4 6 26 48 70 45 70 0.87 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF664-204 - 261 9.4e-62 202.9 78.3 4 10 1.8e-11 1.7e-08 34.5 2.8 2 25 74 97 73 97 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF664-204 - 261 9.4e-62 202.9 78.3 5 10 1.2e-11 1.1e-08 35.1 0.3 1 26 101 126 101 126 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF664-204 - 261 9.4e-62 202.9 78.3 6 10 1.4e-10 1.4e-07 31.7 3.8 4 26 132 154 129 154 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF664-204 - 261 9.4e-62 202.9 78.3 7 10 1e-10 9.8e-08 32.1 2.4 5 25 161 181 158 182 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF664-204 - 261 9.4e-62 202.9 78.3 8 10 3.2e-08 3e-05 24.2 1.5 5 25 189 209 188 210 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF664-204 - 261 9.4e-62 202.9 78.3 9 10 2.1e-11 2e-08 34.3 0.7 5 25 217 237 216 238 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF664-204 - 261 9.4e-62 202.9 78.3 10 10 0.11 1e+02 3.6 0.9 5 14 245 254 244 256 0.88 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZNF664-204 - 261 1.6e-46 154.2 82.5 1 9 7.9e-06 0.0075 16.7 1.0 1 23 3 25 3 25 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF664-204 - 261 1.6e-46 154.2 82.5 2 9 0.00022 0.21 12.1 4.5 1 23 31 53 31 53 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF664-204 - 261 1.6e-46 154.2 82.5 3 9 3.9e-08 3.7e-05 23.9 1.8 1 23 59 81 59 81 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF664-204 - 261 1.6e-46 154.2 82.5 4 9 4.6e-08 4.4e-05 23.7 1.3 1 23 87 109 87 109 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF664-204 - 261 1.6e-46 154.2 82.5 5 9 4.8e-09 4.5e-06 26.8 1.6 1 23 115 137 115 137 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF664-204 - 261 1.6e-46 154.2 82.5 6 9 8e-08 7.6e-05 23.0 4.6 1 23 143 165 143 165 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF664-204 - 261 1.6e-46 154.2 82.5 7 9 8.1e-09 7.6e-06 26.1 2.3 1 23 171 193 171 193 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF664-204 - 261 1.6e-46 154.2 82.5 8 9 2.7e-08 2.5e-05 24.4 3.9 1 23 199 221 199 221 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF664-204 - 261 1.6e-46 154.2 82.5 9 9 1.2e-08 1.1e-05 25.6 1.6 1 23 227 249 227 249 0.99 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZNF664-204 - 261 2.5e-23 80.7 80.1 1 9 0.0001 0.098 13.6 0.8 1 23 3 25 3 26 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF664-204 - 261 2.5e-23 80.7 80.1 2 9 0.0031 2.9 9.0 3.7 1 23 31 53 31 54 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF664-204 - 261 2.5e-23 80.7 80.1 3 9 3e-07 0.00028 21.5 0.7 1 23 59 81 59 82 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF664-204 - 261 2.5e-23 80.7 80.1 4 9 7.6e-05 0.072 14.0 1.4 1 23 87 109 87 110 0.89 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF664-204 - 261 2.5e-23 80.7 80.1 5 9 1.8e-05 0.017 15.9 1.6 1 23 115 137 115 138 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF664-204 - 261 2.5e-23 80.7 80.1 6 9 0.0011 1.1 10.3 4.3 1 23 143 165 143 166 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF664-204 - 261 2.5e-23 80.7 80.1 7 9 4.7e-05 0.044 14.6 2.5 1 23 171 193 171 194 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF664-204 - 261 2.5e-23 80.7 80.1 8 9 0.00018 0.17 12.8 4.0 1 23 199 221 199 222 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF664-204 - 261 2.5e-23 80.7 80.1 9 9 1.4e-05 0.013 16.3 1.8 1 23 227 249 227 250 0.95 C2H2-type zinc finger XPA_N PF01286.18 32 ZNF664-204 - 261 1.9e-07 31.0 42.7 1 9 4.7 4.4e+03 -2.2 0.1 21 26 4 9 2 10 0.53 XPA protein N-terminal XPA_N PF01286.18 32 ZNF664-204 - 261 1.9e-07 31.0 42.7 2 9 0.015 15 5.8 0.4 3 11 32 40 30 44 0.88 XPA protein N-terminal XPA_N PF01286.18 32 ZNF664-204 - 261 1.9e-07 31.0 42.7 3 9 0.0063 5.9 7.0 0.3 3 13 60 70 59 74 0.89 XPA protein N-terminal XPA_N PF01286.18 32 ZNF664-204 - 261 1.9e-07 31.0 42.7 4 9 0.0054 5.1 7.2 0.1 3 14 88 99 86 104 0.85 XPA protein N-terminal XPA_N PF01286.18 32 ZNF664-204 - 261 1.9e-07 31.0 42.7 5 9 0.0091 8.6 6.5 0.1 3 14 116 127 114 128 0.91 XPA protein N-terminal XPA_N PF01286.18 32 ZNF664-204 - 261 1.9e-07 31.0 42.7 6 9 0.002 1.9 8.6 0.3 3 12 144 153 142 158 0.88 XPA protein N-terminal XPA_N PF01286.18 32 ZNF664-204 - 261 1.9e-07 31.0 42.7 7 9 0.0016 1.5 8.9 0.3 3 14 172 183 170 184 0.91 XPA protein N-terminal XPA_N PF01286.18 32 ZNF664-204 - 261 1.9e-07 31.0 42.7 8 9 0.12 1.1e+02 2.9 0.9 3 14 200 211 198 212 0.89 XPA protein N-terminal XPA_N PF01286.18 32 ZNF664-204 - 261 1.9e-07 31.0 42.7 9 9 0.0003 0.28 11.3 0.7 3 14 228 239 226 240 0.92 XPA protein N-terminal # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF664-204.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF664-204.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF664-204.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF664-204.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF664-204.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:11:49 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF664-205.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF664-205.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF664-205.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF664-205.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF664-205.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:11:50 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF664-206.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF664-206.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF664-206.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF664-206.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF664-206.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:11:50 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZNF664-207 - 261 9.4e-62 202.9 78.3 1 10 0.025 23 5.6 0.3 14 25 2 13 1 14 0.88 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF664-207 - 261 9.4e-62 202.9 78.3 2 10 2.5e-08 2.3e-05 24.6 4.2 2 24 18 40 17 42 0.90 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF664-207 - 261 9.4e-62 202.9 78.3 3 10 2.9e-08 2.7e-05 24.4 0.4 6 26 48 70 45 70 0.87 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF664-207 - 261 9.4e-62 202.9 78.3 4 10 1.8e-11 1.7e-08 34.5 2.8 2 25 74 97 73 97 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF664-207 - 261 9.4e-62 202.9 78.3 5 10 1.2e-11 1.1e-08 35.1 0.3 1 26 101 126 101 126 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF664-207 - 261 9.4e-62 202.9 78.3 6 10 1.4e-10 1.4e-07 31.7 3.8 4 26 132 154 129 154 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF664-207 - 261 9.4e-62 202.9 78.3 7 10 1e-10 9.8e-08 32.1 2.4 5 25 161 181 158 182 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF664-207 - 261 9.4e-62 202.9 78.3 8 10 3.2e-08 3e-05 24.2 1.5 5 25 189 209 188 210 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF664-207 - 261 9.4e-62 202.9 78.3 9 10 2.1e-11 2e-08 34.3 0.7 5 25 217 237 216 238 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF664-207 - 261 9.4e-62 202.9 78.3 10 10 0.11 1e+02 3.6 0.9 5 14 245 254 244 256 0.88 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZNF664-207 - 261 1.6e-46 154.2 82.5 1 9 7.9e-06 0.0075 16.7 1.0 1 23 3 25 3 25 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF664-207 - 261 1.6e-46 154.2 82.5 2 9 0.00022 0.21 12.1 4.5 1 23 31 53 31 53 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF664-207 - 261 1.6e-46 154.2 82.5 3 9 3.9e-08 3.7e-05 23.9 1.8 1 23 59 81 59 81 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF664-207 - 261 1.6e-46 154.2 82.5 4 9 4.6e-08 4.4e-05 23.7 1.3 1 23 87 109 87 109 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF664-207 - 261 1.6e-46 154.2 82.5 5 9 4.8e-09 4.5e-06 26.8 1.6 1 23 115 137 115 137 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF664-207 - 261 1.6e-46 154.2 82.5 6 9 8e-08 7.6e-05 23.0 4.6 1 23 143 165 143 165 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF664-207 - 261 1.6e-46 154.2 82.5 7 9 8.1e-09 7.6e-06 26.1 2.3 1 23 171 193 171 193 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF664-207 - 261 1.6e-46 154.2 82.5 8 9 2.7e-08 2.5e-05 24.4 3.9 1 23 199 221 199 221 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF664-207 - 261 1.6e-46 154.2 82.5 9 9 1.2e-08 1.1e-05 25.6 1.6 1 23 227 249 227 249 0.99 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZNF664-207 - 261 2.5e-23 80.7 80.1 1 9 0.0001 0.098 13.6 0.8 1 23 3 25 3 26 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF664-207 - 261 2.5e-23 80.7 80.1 2 9 0.0031 2.9 9.0 3.7 1 23 31 53 31 54 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF664-207 - 261 2.5e-23 80.7 80.1 3 9 3e-07 0.00028 21.5 0.7 1 23 59 81 59 82 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF664-207 - 261 2.5e-23 80.7 80.1 4 9 7.6e-05 0.072 14.0 1.4 1 23 87 109 87 110 0.89 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF664-207 - 261 2.5e-23 80.7 80.1 5 9 1.8e-05 0.017 15.9 1.6 1 23 115 137 115 138 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF664-207 - 261 2.5e-23 80.7 80.1 6 9 0.0011 1.1 10.3 4.3 1 23 143 165 143 166 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF664-207 - 261 2.5e-23 80.7 80.1 7 9 4.7e-05 0.044 14.6 2.5 1 23 171 193 171 194 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF664-207 - 261 2.5e-23 80.7 80.1 8 9 0.00018 0.17 12.8 4.0 1 23 199 221 199 222 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF664-207 - 261 2.5e-23 80.7 80.1 9 9 1.4e-05 0.013 16.3 1.8 1 23 227 249 227 250 0.95 C2H2-type zinc finger XPA_N PF01286.18 32 ZNF664-207 - 261 1.9e-07 31.0 42.7 1 9 4.7 4.4e+03 -2.2 0.1 21 26 4 9 2 10 0.53 XPA protein N-terminal XPA_N PF01286.18 32 ZNF664-207 - 261 1.9e-07 31.0 42.7 2 9 0.015 15 5.8 0.4 3 11 32 40 30 44 0.88 XPA protein N-terminal XPA_N PF01286.18 32 ZNF664-207 - 261 1.9e-07 31.0 42.7 3 9 0.0063 5.9 7.0 0.3 3 13 60 70 59 74 0.89 XPA protein N-terminal XPA_N PF01286.18 32 ZNF664-207 - 261 1.9e-07 31.0 42.7 4 9 0.0054 5.1 7.2 0.1 3 14 88 99 86 104 0.85 XPA protein N-terminal XPA_N PF01286.18 32 ZNF664-207 - 261 1.9e-07 31.0 42.7 5 9 0.0091 8.6 6.5 0.1 3 14 116 127 114 128 0.91 XPA protein N-terminal XPA_N PF01286.18 32 ZNF664-207 - 261 1.9e-07 31.0 42.7 6 9 0.002 1.9 8.6 0.3 3 12 144 153 142 158 0.88 XPA protein N-terminal XPA_N PF01286.18 32 ZNF664-207 - 261 1.9e-07 31.0 42.7 7 9 0.0016 1.5 8.9 0.3 3 14 172 183 170 184 0.91 XPA protein N-terminal XPA_N PF01286.18 32 ZNF664-207 - 261 1.9e-07 31.0 42.7 8 9 0.12 1.1e+02 2.9 0.9 3 14 200 211 198 212 0.89 XPA protein N-terminal XPA_N PF01286.18 32 ZNF664-207 - 261 1.9e-07 31.0 42.7 9 9 0.0003 0.28 11.3 0.7 3 14 228 239 226 240 0.92 XPA protein N-terminal # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF664-207.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF664-207.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF664-207.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF664-207.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF664-207.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:11:50 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF664-208.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF664-208.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF664-208.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF664-208.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF664-208.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:11:51 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF664-209.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF664-209.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF664-209.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF664-209.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF664-209.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:11:51 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF664-210.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF664-210.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF664-210.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF664-210.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF664-210.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:11:51 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF664-211.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF664-211.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF664-211.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF664-211.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF664-211.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:11:52 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF664-212.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF664-212.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF664-212.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF664-212.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF664-212.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:11:52 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF664-213.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF664-213.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF664-213.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF664-213.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF664-213.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:11:53 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF664-214.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF664-214.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF664-214.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF664-214.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF664-214.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:11:53 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZNF667-201 - 610 3.7e-92 299.0 115.0 1 17 3.8e-06 0.0037 17.6 1.6 7 25 136 154 135 155 0.89 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF667-201 - 610 3.7e-92 299.0 115.0 2 17 1.8e-10 1.8e-07 31.2 0.5 1 25 158 182 158 183 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF667-201 - 610 3.7e-92 299.0 115.0 3 17 9.3e-07 0.00092 19.5 1.2 5 25 190 210 189 211 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF667-201 - 610 3.7e-92 299.0 115.0 4 17 0.00099 0.99 10.0 1.3 5 25 218 263 215 264 0.79 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF667-201 - 610 3.7e-92 299.0 115.0 5 17 0.00031 0.31 11.6 2.3 2 26 268 292 267 292 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF667-201 - 610 3.7e-92 299.0 115.0 6 17 0.79 7.9e+02 0.8 0.1 4 13 298 307 296 309 0.85 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF667-201 - 610 3.7e-92 299.0 115.0 7 17 1.5e-05 0.015 15.7 0.2 7 25 322 340 314 341 0.90 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF667-201 - 610 3.7e-92 299.0 115.0 8 17 2.9e-10 2.9e-07 30.6 1.9 2 25 345 368 345 369 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF667-201 - 610 3.7e-92 299.0 115.0 9 17 8.2e-07 0.00081 19.7 0.7 5 24 376 395 373 397 0.89 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF667-201 - 610 3.7e-92 299.0 115.0 10 17 4.1e-08 4.1e-05 23.8 1.9 2 25 401 425 400 425 0.90 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF667-201 - 610 3.7e-92 299.0 115.0 11 17 1.7e-07 0.00017 21.8 1.0 1 25 429 453 429 454 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF667-201 - 610 3.7e-92 299.0 115.0 12 17 1.1e-11 1.1e-08 35.1 0.6 4 26 460 482 458 482 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF667-201 - 610 3.7e-92 299.0 115.0 13 17 6.3e-11 6.3e-08 32.7 0.3 1 25 485 509 485 510 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF667-201 - 610 3.7e-92 299.0 115.0 14 17 2.2e-11 2.2e-08 34.1 1.2 1 25 513 537 513 538 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF667-201 - 610 3.7e-92 299.0 115.0 15 17 3.3e-11 3.3e-08 33.6 0.2 2 26 542 566 541 566 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF667-201 - 610 3.7e-92 299.0 115.0 16 17 6.4e-11 6.4e-08 32.7 0.6 1 25 569 593 569 594 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF667-201 - 610 3.7e-92 299.0 115.0 17 17 2 2e+03 -0.5 0.1 2 13 598 609 597 610 0.86 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZNF667-201 - 610 2.4e-75 245.0 116.5 1 16 1.8e-08 1.8e-05 24.9 1.2 2 23 145 166 144 166 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF667-201 - 610 2.4e-75 245.0 116.5 2 16 4.3e-05 0.043 14.3 0.5 1 23 172 194 172 194 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF667-201 - 610 2.4e-75 245.0 116.5 3 16 1.3e-07 0.00013 22.2 1.3 1 23 200 222 200 222 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF667-201 - 610 2.4e-75 245.0 116.5 4 16 0.0036 3.6 8.2 0.1 5 23 229 247 226 247 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF667-201 - 610 2.4e-75 245.0 116.5 5 16 2.5e-05 0.025 15.0 2.7 2 23 254 275 253 275 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF667-201 - 610 2.4e-75 245.0 116.5 6 16 0.00053 0.53 10.8 0.4 5 23 285 303 282 303 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF667-201 - 610 2.4e-75 245.0 116.5 7 16 4.2e-06 0.0042 17.5 1.0 1 23 330 352 330 352 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF667-201 - 610 2.4e-75 245.0 116.5 8 16 8.6e-08 8.6e-05 22.8 1.6 1 23 358 380 358 380 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF667-201 - 610 2.4e-75 245.0 116.5 9 16 5.7e-06 0.0057 17.1 5.2 1 23 386 408 386 408 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF667-201 - 610 2.4e-75 245.0 116.5 10 16 2e-07 0.0002 21.6 0.2 1 23 415 437 415 437 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF667-201 - 610 2.4e-75 245.0 116.5 11 16 1e-07 0.0001 22.6 1.1 1 23 443 465 443 465 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF667-201 - 610 2.4e-75 245.0 116.5 12 16 4.4e-08 4.4e-05 23.7 1.8 1 23 471 493 471 493 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF667-201 - 610 2.4e-75 245.0 116.5 13 16 6.5e-08 6.4e-05 23.2 0.3 1 23 499 521 499 521 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF667-201 - 610 2.4e-75 245.0 116.5 14 16 1.3e-07 0.00013 22.2 1.0 1 23 527 549 527 549 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF667-201 - 610 2.4e-75 245.0 116.5 15 16 8.3e-09 8.2e-06 26.0 0.2 1 23 555 577 555 577 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF667-201 - 610 2.4e-75 245.0 116.5 16 16 5.3e-09 5.3e-06 26.6 1.0 1 23 583 605 583 605 0.99 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZNF667-201 - 610 9.3e-36 119.4 109.8 1 16 0.0001 0.1 13.5 0.8 2 23 145 166 144 167 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF667-201 - 610 9.3e-36 119.4 109.8 2 16 0.0041 4.1 8.5 0.5 1 23 172 194 172 195 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF667-201 - 610 9.3e-36 119.4 109.8 3 16 8.8e-05 0.088 13.7 0.5 1 23 200 222 200 223 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF667-201 - 610 9.3e-36 119.4 109.8 4 16 0.16 1.6e+02 3.6 0.2 6 23 230 247 228 248 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF667-201 - 610 9.3e-36 119.4 109.8 5 16 0.0012 1.2 10.2 2.3 2 23 254 275 253 276 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF667-201 - 610 9.3e-36 119.4 109.8 6 16 0.11 1e+02 4.1 0.2 5 23 285 303 283 304 0.87 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF667-201 - 610 9.3e-36 119.4 109.8 7 16 0.0005 0.5 11.4 0.7 1 23 330 352 330 353 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF667-201 - 610 9.3e-36 119.4 109.8 8 16 0.00058 0.58 11.2 0.9 1 23 358 380 358 381 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF667-201 - 610 9.3e-36 119.4 109.8 9 16 0.0048 4.8 8.3 4.5 1 23 386 408 386 409 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF667-201 - 610 9.3e-36 119.4 109.8 10 16 7.1e-05 0.071 14.0 0.2 1 23 415 437 415 438 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF667-201 - 610 9.3e-36 119.4 109.8 11 16 0.00035 0.35 11.8 1.1 1 23 443 465 443 466 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF667-201 - 610 9.3e-36 119.4 109.8 12 16 0.00015 0.15 13.0 1.3 1 23 471 493 471 494 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF667-201 - 610 9.3e-36 119.4 109.8 13 16 9.4e-06 0.0094 16.7 0.4 1 23 499 521 499 522 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF667-201 - 610 9.3e-36 119.4 109.8 14 16 0.00015 0.15 13.0 0.8 1 23 527 549 527 550 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF667-201 - 610 9.3e-36 119.4 109.8 15 16 1e-06 0.001 19.7 0.2 1 23 555 577 555 578 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF667-201 - 610 9.3e-36 119.4 109.8 16 16 3.4e-06 0.0034 18.1 0.8 1 23 583 605 583 606 0.96 C2H2-type zinc finger KRAB PF01352.27 42 ZNF667-201 - 610 6.1e-23 80.2 0.0 1 1 1e-25 1e-22 79.5 0.0 1 42 13 54 13 54 0.98 KRAB box zf-C2H2_6 PF13912.6 27 ZNF667-201 - 610 1.4e-17 63.2 100.8 1 15 0.087 86 3.3 0.8 3 12 145 154 145 159 0.91 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF667-201 - 610 1.4e-17 63.2 100.8 2 15 0.13 1.3e+02 2.7 0.5 2 12 172 182 172 186 0.91 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF667-201 - 610 1.4e-17 63.2 100.8 3 15 0.00032 0.32 11.1 0.3 2 24 200 222 199 224 0.85 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF667-201 - 610 1.4e-17 63.2 100.8 4 15 0.09 89 3.2 1.6 4 24 255 275 254 278 0.89 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF667-201 - 610 1.4e-17 63.2 100.8 5 15 0.0053 5.3 7.2 0.2 2 22 330 350 330 355 0.82 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF667-201 - 610 1.4e-17 63.2 100.8 6 15 0.00082 0.82 9.7 0.2 2 24 358 380 358 383 0.90 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF667-201 - 610 1.4e-17 63.2 100.8 7 15 0.89 8.8e+02 0.1 4.9 2 24 386 408 385 411 0.83 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF667-201 - 610 1.4e-17 63.2 100.8 8 15 0.0014 1.4 9.0 0.2 2 12 415 425 414 426 0.91 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF667-201 - 610 1.4e-17 63.2 100.8 9 15 7.4e-05 0.074 13.1 0.7 2 24 443 465 443 468 0.89 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF667-201 - 610 1.4e-17 63.2 100.8 10 15 0.0031 3.1 7.9 1.3 2 24 471 493 471 495 0.90 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF667-201 - 610 1.4e-17 63.2 100.8 11 15 0.00068 0.68 10.0 0.4 2 12 499 509 499 510 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF667-201 - 610 1.4e-17 63.2 100.8 12 15 2.1 2.1e+03 -1.1 0.1 19 26 512 519 511 520 0.85 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF667-201 - 610 1.4e-17 63.2 100.8 13 15 6.2e-05 0.062 13.3 0.9 2 24 527 549 527 552 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF667-201 - 610 1.4e-17 63.2 100.8 14 15 1.1e-08 1.1e-05 25.3 0.8 2 26 555 579 555 580 0.96 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF667-201 - 610 1.4e-17 63.2 100.8 15 15 0.00062 0.62 10.1 1.7 2 26 583 607 583 608 0.92 C2H2-type zinc finger Zn-ribbon_8 PF09723.10 40 ZNF667-201 - 610 5.5e-12 45.6 73.7 1 13 0.001 1 9.6 2.6 7 38 145 183 143 185 0.84 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF667-201 - 610 5.5e-12 45.6 73.7 2 13 0.0019 1.9 8.7 3.0 6 35 172 208 171 213 0.85 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF667-201 - 610 5.5e-12 45.6 73.7 3 13 0.037 37 4.6 1.3 7 29 201 230 198 237 0.69 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF667-201 - 610 5.5e-12 45.6 73.7 4 13 0.032 32 4.7 2.0 10 36 236 262 228 266 0.71 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF667-201 - 610 5.5e-12 45.6 73.7 5 13 0.029 29 4.9 1.1 7 20 254 267 252 294 0.80 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF667-201 - 610 5.5e-12 45.6 73.7 6 13 0.00011 0.11 12.6 1.4 6 38 330 369 329 371 0.86 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF667-201 - 610 5.5e-12 45.6 73.7 7 13 0.068 68 3.7 6.9 6 34 386 422 385 425 0.83 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF667-201 - 610 5.5e-12 45.6 73.7 8 13 0.001 1 9.6 3.0 6 34 415 450 414 455 0.83 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF667-201 - 610 5.5e-12 45.6 73.7 9 13 0.00043 0.43 10.7 4.1 6 36 443 480 442 484 0.88 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF667-201 - 610 5.5e-12 45.6 73.7 10 13 0.00024 0.24 11.6 5.4 6 35 471 507 470 510 0.81 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF667-201 - 610 5.5e-12 45.6 73.7 11 13 9.8e-05 0.098 12.8 4.0 6 36 499 536 498 540 0.80 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF667-201 - 610 5.5e-12 45.6 73.7 12 13 0.015 15 5.8 0.2 6 18 527 539 526 546 0.83 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF667-201 - 610 5.5e-12 45.6 73.7 13 13 4.7e-06 0.0046 17.0 2.4 6 38 555 594 554 595 0.88 Zinc ribbon domain zf-C2H2_jaz PF12171.8 27 ZNF667-201 - 610 5e-11 42.6 58.4 1 13 0.0099 9.8 6.6 0.1 3 22 145 164 143 164 0.91 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF667-201 - 610 5e-11 42.6 58.4 2 13 0.2 2e+02 2.4 0.1 2 12 172 182 171 192 0.78 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF667-201 - 610 5e-11 42.6 58.4 3 13 2 2e+03 -0.8 0.4 7 22 258 273 255 273 0.91 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF667-201 - 610 5e-11 42.6 58.4 4 13 0.066 65 4.0 0.0 7 22 286 301 286 301 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF667-201 - 610 5e-11 42.6 58.4 5 13 0.04 40 4.6 0.1 2 22 358 378 357 378 0.89 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF667-201 - 610 5e-11 42.6 58.4 6 13 0.3 3e+02 1.9 4.1 4 22 388 406 386 406 0.88 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF667-201 - 610 5e-11 42.6 58.4 7 13 0.00029 0.29 11.5 0.1 2 22 415 435 414 435 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF667-201 - 610 5e-11 42.6 58.4 8 13 0.038 38 4.7 0.3 2 22 443 463 442 463 0.91 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF667-201 - 610 5e-11 42.6 58.4 9 13 0.0083 8.2 6.8 0.1 4 22 473 491 470 491 0.90 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF667-201 - 610 5e-11 42.6 58.4 10 13 0.032 32 5.0 0.2 2 22 499 519 498 519 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF667-201 - 610 5e-11 42.6 58.4 11 13 0.0013 1.3 9.4 0.1 2 24 527 549 526 549 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF667-201 - 610 5e-11 42.6 58.4 12 13 0.00012 0.12 12.7 0.1 2 24 555 577 554 578 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF667-201 - 610 5e-11 42.6 58.4 13 13 0.02 20 5.6 0.5 2 24 583 605 582 606 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_11 PF16622.5 29 ZNF667-201 - 610 6.4e-08 32.2 72.8 1 13 0.00046 0.46 10.3 0.4 6 26 145 165 142 166 0.90 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF667-201 - 610 6.4e-08 32.2 72.8 2 13 0.023 23 4.9 0.8 4 26 199 221 197 222 0.91 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF667-201 - 610 6.4e-08 32.2 72.8 3 13 0.0015 1.5 8.7 1.7 4 23 252 271 250 275 0.77 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF667-201 - 610 6.4e-08 32.2 72.8 4 13 8.4 8.4e+03 -3.3 0.1 7 14 283 290 279 290 0.69 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF667-201 - 610 6.4e-08 32.2 72.8 5 13 5 5e+03 -2.6 0.5 24 29 295 300 292 300 0.86 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF667-201 - 610 6.4e-08 32.2 72.8 6 13 0.03 29 4.5 0.0 4 15 329 340 327 351 0.70 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF667-201 - 610 6.4e-08 32.2 72.8 7 13 0.036 36 4.2 0.1 7 25 417 435 415 437 0.85 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF667-201 - 610 6.4e-08 32.2 72.8 8 13 2.8 2.8e+03 -1.8 0.1 5 21 443 459 440 464 0.69 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF667-201 - 610 6.4e-08 32.2 72.8 9 13 2.3e-07 0.00022 20.9 0.3 5 26 471 492 468 493 0.94 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF667-201 - 610 6.4e-08 32.2 72.8 10 13 0.012 12 5.7 0.1 7 26 501 520 498 521 0.91 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF667-201 - 610 6.4e-08 32.2 72.8 11 13 0.081 81 3.1 0.2 7 23 529 545 526 547 0.85 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF667-201 - 610 6.4e-08 32.2 72.8 12 13 0.00083 0.83 9.5 0.1 6 24 556 574 553 575 0.91 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF667-201 - 610 6.4e-08 32.2 72.8 13 13 0.00056 0.56 10.0 0.3 6 23 584 601 580 603 0.93 zinc-finger C2H2-type zf-C2H2_8 PF15909.5 98 ZNF667-201 - 610 1.2e-07 31.9 64.6 1 8 0.00016 0.16 12.3 3.5 17 91 124 196 108 202 0.82 C2H2-type zinc ribbon zf-C2H2_8 PF15909.5 98 ZNF667-201 - 610 1.2e-07 31.9 64.6 2 8 0.19 1.9e+02 2.5 0.4 40 77 202 238 194 254 0.66 C2H2-type zinc ribbon zf-C2H2_8 PF15909.5 98 ZNF667-201 - 610 1.2e-07 31.9 64.6 3 8 0.00075 0.75 10.1 3.2 36 72 251 289 227 306 0.74 C2H2-type zinc ribbon zf-C2H2_8 PF15909.5 98 ZNF667-201 - 610 1.2e-07 31.9 64.6 4 8 0.00041 0.41 11.0 3.1 25 88 319 379 306 384 0.78 C2H2-type zinc ribbon zf-C2H2_8 PF15909.5 98 ZNF667-201 - 610 1.2e-07 31.9 64.6 5 8 0.0019 1.9 8.8 5.3 34 90 384 438 378 440 0.82 C2H2-type zinc ribbon zf-C2H2_8 PF15909.5 98 ZNF667-201 - 610 1.2e-07 31.9 64.6 6 8 0.00052 0.52 10.6 3.5 29 91 436 495 427 501 0.82 C2H2-type zinc ribbon zf-C2H2_8 PF15909.5 98 ZNF667-201 - 610 1.2e-07 31.9 64.6 7 8 0.045 45 4.4 0.5 41 85 502 545 494 554 0.79 C2H2-type zinc ribbon zf-C2H2_8 PF15909.5 98 ZNF667-201 - 610 1.2e-07 31.9 64.6 8 8 0.0041 4.1 7.8 1.9 36 91 555 607 544 610 0.79 C2H2-type zinc ribbon # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF667-201.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF667-201.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF667-201.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF667-201.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF667-201.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:11:53 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZNF667-202 - 610 3.7e-92 299.0 115.0 1 17 3.8e-06 0.0037 17.6 1.6 7 25 136 154 135 155 0.89 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF667-202 - 610 3.7e-92 299.0 115.0 2 17 1.8e-10 1.8e-07 31.2 0.5 1 25 158 182 158 183 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF667-202 - 610 3.7e-92 299.0 115.0 3 17 9.3e-07 0.00092 19.5 1.2 5 25 190 210 189 211 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF667-202 - 610 3.7e-92 299.0 115.0 4 17 0.00099 0.99 10.0 1.3 5 25 218 263 215 264 0.79 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF667-202 - 610 3.7e-92 299.0 115.0 5 17 0.00031 0.31 11.6 2.3 2 26 268 292 267 292 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF667-202 - 610 3.7e-92 299.0 115.0 6 17 0.79 7.9e+02 0.8 0.1 4 13 298 307 296 309 0.85 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF667-202 - 610 3.7e-92 299.0 115.0 7 17 1.5e-05 0.015 15.7 0.2 7 25 322 340 314 341 0.90 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF667-202 - 610 3.7e-92 299.0 115.0 8 17 2.9e-10 2.9e-07 30.6 1.9 2 25 345 368 345 369 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF667-202 - 610 3.7e-92 299.0 115.0 9 17 8.2e-07 0.00081 19.7 0.7 5 24 376 395 373 397 0.89 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF667-202 - 610 3.7e-92 299.0 115.0 10 17 4.1e-08 4.1e-05 23.8 1.9 2 25 401 425 400 425 0.90 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF667-202 - 610 3.7e-92 299.0 115.0 11 17 1.7e-07 0.00017 21.8 1.0 1 25 429 453 429 454 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF667-202 - 610 3.7e-92 299.0 115.0 12 17 1.1e-11 1.1e-08 35.1 0.6 4 26 460 482 458 482 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF667-202 - 610 3.7e-92 299.0 115.0 13 17 6.3e-11 6.3e-08 32.7 0.3 1 25 485 509 485 510 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF667-202 - 610 3.7e-92 299.0 115.0 14 17 2.2e-11 2.2e-08 34.1 1.2 1 25 513 537 513 538 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF667-202 - 610 3.7e-92 299.0 115.0 15 17 3.3e-11 3.3e-08 33.6 0.2 2 26 542 566 541 566 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF667-202 - 610 3.7e-92 299.0 115.0 16 17 6.4e-11 6.4e-08 32.7 0.6 1 25 569 593 569 594 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF667-202 - 610 3.7e-92 299.0 115.0 17 17 2 2e+03 -0.5 0.1 2 13 598 609 597 610 0.86 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZNF667-202 - 610 2.4e-75 245.0 116.5 1 16 1.8e-08 1.8e-05 24.9 1.2 2 23 145 166 144 166 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF667-202 - 610 2.4e-75 245.0 116.5 2 16 4.3e-05 0.043 14.3 0.5 1 23 172 194 172 194 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF667-202 - 610 2.4e-75 245.0 116.5 3 16 1.3e-07 0.00013 22.2 1.3 1 23 200 222 200 222 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF667-202 - 610 2.4e-75 245.0 116.5 4 16 0.0036 3.6 8.2 0.1 5 23 229 247 226 247 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF667-202 - 610 2.4e-75 245.0 116.5 5 16 2.5e-05 0.025 15.0 2.7 2 23 254 275 253 275 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF667-202 - 610 2.4e-75 245.0 116.5 6 16 0.00053 0.53 10.8 0.4 5 23 285 303 282 303 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF667-202 - 610 2.4e-75 245.0 116.5 7 16 4.2e-06 0.0042 17.5 1.0 1 23 330 352 330 352 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF667-202 - 610 2.4e-75 245.0 116.5 8 16 8.6e-08 8.6e-05 22.8 1.6 1 23 358 380 358 380 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF667-202 - 610 2.4e-75 245.0 116.5 9 16 5.7e-06 0.0057 17.1 5.2 1 23 386 408 386 408 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF667-202 - 610 2.4e-75 245.0 116.5 10 16 2e-07 0.0002 21.6 0.2 1 23 415 437 415 437 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF667-202 - 610 2.4e-75 245.0 116.5 11 16 1e-07 0.0001 22.6 1.1 1 23 443 465 443 465 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF667-202 - 610 2.4e-75 245.0 116.5 12 16 4.4e-08 4.4e-05 23.7 1.8 1 23 471 493 471 493 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF667-202 - 610 2.4e-75 245.0 116.5 13 16 6.5e-08 6.4e-05 23.2 0.3 1 23 499 521 499 521 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF667-202 - 610 2.4e-75 245.0 116.5 14 16 1.3e-07 0.00013 22.2 1.0 1 23 527 549 527 549 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF667-202 - 610 2.4e-75 245.0 116.5 15 16 8.3e-09 8.2e-06 26.0 0.2 1 23 555 577 555 577 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF667-202 - 610 2.4e-75 245.0 116.5 16 16 5.3e-09 5.3e-06 26.6 1.0 1 23 583 605 583 605 0.99 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZNF667-202 - 610 9.3e-36 119.4 109.8 1 16 0.0001 0.1 13.5 0.8 2 23 145 166 144 167 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF667-202 - 610 9.3e-36 119.4 109.8 2 16 0.0041 4.1 8.5 0.5 1 23 172 194 172 195 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF667-202 - 610 9.3e-36 119.4 109.8 3 16 8.8e-05 0.088 13.7 0.5 1 23 200 222 200 223 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF667-202 - 610 9.3e-36 119.4 109.8 4 16 0.16 1.6e+02 3.6 0.2 6 23 230 247 228 248 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF667-202 - 610 9.3e-36 119.4 109.8 5 16 0.0012 1.2 10.2 2.3 2 23 254 275 253 276 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF667-202 - 610 9.3e-36 119.4 109.8 6 16 0.11 1e+02 4.1 0.2 5 23 285 303 283 304 0.87 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF667-202 - 610 9.3e-36 119.4 109.8 7 16 0.0005 0.5 11.4 0.7 1 23 330 352 330 353 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF667-202 - 610 9.3e-36 119.4 109.8 8 16 0.00058 0.58 11.2 0.9 1 23 358 380 358 381 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF667-202 - 610 9.3e-36 119.4 109.8 9 16 0.0048 4.8 8.3 4.5 1 23 386 408 386 409 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF667-202 - 610 9.3e-36 119.4 109.8 10 16 7.1e-05 0.071 14.0 0.2 1 23 415 437 415 438 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF667-202 - 610 9.3e-36 119.4 109.8 11 16 0.00035 0.35 11.8 1.1 1 23 443 465 443 466 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF667-202 - 610 9.3e-36 119.4 109.8 12 16 0.00015 0.15 13.0 1.3 1 23 471 493 471 494 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF667-202 - 610 9.3e-36 119.4 109.8 13 16 9.4e-06 0.0094 16.7 0.4 1 23 499 521 499 522 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF667-202 - 610 9.3e-36 119.4 109.8 14 16 0.00015 0.15 13.0 0.8 1 23 527 549 527 550 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF667-202 - 610 9.3e-36 119.4 109.8 15 16 1e-06 0.001 19.7 0.2 1 23 555 577 555 578 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF667-202 - 610 9.3e-36 119.4 109.8 16 16 3.4e-06 0.0034 18.1 0.8 1 23 583 605 583 606 0.96 C2H2-type zinc finger KRAB PF01352.27 42 ZNF667-202 - 610 6.1e-23 80.2 0.0 1 1 1e-25 1e-22 79.5 0.0 1 42 13 54 13 54 0.98 KRAB box zf-C2H2_6 PF13912.6 27 ZNF667-202 - 610 1.4e-17 63.2 100.8 1 15 0.087 86 3.3 0.8 3 12 145 154 145 159 0.91 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF667-202 - 610 1.4e-17 63.2 100.8 2 15 0.13 1.3e+02 2.7 0.5 2 12 172 182 172 186 0.91 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF667-202 - 610 1.4e-17 63.2 100.8 3 15 0.00032 0.32 11.1 0.3 2 24 200 222 199 224 0.85 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF667-202 - 610 1.4e-17 63.2 100.8 4 15 0.09 89 3.2 1.6 4 24 255 275 254 278 0.89 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF667-202 - 610 1.4e-17 63.2 100.8 5 15 0.0053 5.3 7.2 0.2 2 22 330 350 330 355 0.82 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF667-202 - 610 1.4e-17 63.2 100.8 6 15 0.00082 0.82 9.7 0.2 2 24 358 380 358 383 0.90 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF667-202 - 610 1.4e-17 63.2 100.8 7 15 0.89 8.8e+02 0.1 4.9 2 24 386 408 385 411 0.83 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF667-202 - 610 1.4e-17 63.2 100.8 8 15 0.0014 1.4 9.0 0.2 2 12 415 425 414 426 0.91 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF667-202 - 610 1.4e-17 63.2 100.8 9 15 7.4e-05 0.074 13.1 0.7 2 24 443 465 443 468 0.89 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF667-202 - 610 1.4e-17 63.2 100.8 10 15 0.0031 3.1 7.9 1.3 2 24 471 493 471 495 0.90 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF667-202 - 610 1.4e-17 63.2 100.8 11 15 0.00068 0.68 10.0 0.4 2 12 499 509 499 510 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF667-202 - 610 1.4e-17 63.2 100.8 12 15 2.1 2.1e+03 -1.1 0.1 19 26 512 519 511 520 0.85 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF667-202 - 610 1.4e-17 63.2 100.8 13 15 6.2e-05 0.062 13.3 0.9 2 24 527 549 527 552 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF667-202 - 610 1.4e-17 63.2 100.8 14 15 1.1e-08 1.1e-05 25.3 0.8 2 26 555 579 555 580 0.96 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF667-202 - 610 1.4e-17 63.2 100.8 15 15 0.00062 0.62 10.1 1.7 2 26 583 607 583 608 0.92 C2H2-type zinc finger Zn-ribbon_8 PF09723.10 40 ZNF667-202 - 610 5.5e-12 45.6 73.7 1 13 0.001 1 9.6 2.6 7 38 145 183 143 185 0.84 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF667-202 - 610 5.5e-12 45.6 73.7 2 13 0.0019 1.9 8.7 3.0 6 35 172 208 171 213 0.85 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF667-202 - 610 5.5e-12 45.6 73.7 3 13 0.037 37 4.6 1.3 7 29 201 230 198 237 0.69 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF667-202 - 610 5.5e-12 45.6 73.7 4 13 0.032 32 4.7 2.0 10 36 236 262 228 266 0.71 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF667-202 - 610 5.5e-12 45.6 73.7 5 13 0.029 29 4.9 1.1 7 20 254 267 252 294 0.80 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF667-202 - 610 5.5e-12 45.6 73.7 6 13 0.00011 0.11 12.6 1.4 6 38 330 369 329 371 0.86 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF667-202 - 610 5.5e-12 45.6 73.7 7 13 0.068 68 3.7 6.9 6 34 386 422 385 425 0.83 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF667-202 - 610 5.5e-12 45.6 73.7 8 13 0.001 1 9.6 3.0 6 34 415 450 414 455 0.83 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF667-202 - 610 5.5e-12 45.6 73.7 9 13 0.00043 0.43 10.7 4.1 6 36 443 480 442 484 0.88 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF667-202 - 610 5.5e-12 45.6 73.7 10 13 0.00024 0.24 11.6 5.4 6 35 471 507 470 510 0.81 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF667-202 - 610 5.5e-12 45.6 73.7 11 13 9.8e-05 0.098 12.8 4.0 6 36 499 536 498 540 0.80 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF667-202 - 610 5.5e-12 45.6 73.7 12 13 0.015 15 5.8 0.2 6 18 527 539 526 546 0.83 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF667-202 - 610 5.5e-12 45.6 73.7 13 13 4.7e-06 0.0046 17.0 2.4 6 38 555 594 554 595 0.88 Zinc ribbon domain zf-C2H2_jaz PF12171.8 27 ZNF667-202 - 610 5e-11 42.6 58.4 1 13 0.0099 9.8 6.6 0.1 3 22 145 164 143 164 0.91 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF667-202 - 610 5e-11 42.6 58.4 2 13 0.2 2e+02 2.4 0.1 2 12 172 182 171 192 0.78 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF667-202 - 610 5e-11 42.6 58.4 3 13 2 2e+03 -0.8 0.4 7 22 258 273 255 273 0.91 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF667-202 - 610 5e-11 42.6 58.4 4 13 0.066 65 4.0 0.0 7 22 286 301 286 301 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF667-202 - 610 5e-11 42.6 58.4 5 13 0.04 40 4.6 0.1 2 22 358 378 357 378 0.89 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF667-202 - 610 5e-11 42.6 58.4 6 13 0.3 3e+02 1.9 4.1 4 22 388 406 386 406 0.88 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF667-202 - 610 5e-11 42.6 58.4 7 13 0.00029 0.29 11.5 0.1 2 22 415 435 414 435 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF667-202 - 610 5e-11 42.6 58.4 8 13 0.038 38 4.7 0.3 2 22 443 463 442 463 0.91 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF667-202 - 610 5e-11 42.6 58.4 9 13 0.0083 8.2 6.8 0.1 4 22 473 491 470 491 0.90 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF667-202 - 610 5e-11 42.6 58.4 10 13 0.032 32 5.0 0.2 2 22 499 519 498 519 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF667-202 - 610 5e-11 42.6 58.4 11 13 0.0013 1.3 9.4 0.1 2 24 527 549 526 549 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF667-202 - 610 5e-11 42.6 58.4 12 13 0.00012 0.12 12.7 0.1 2 24 555 577 554 578 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF667-202 - 610 5e-11 42.6 58.4 13 13 0.02 20 5.6 0.5 2 24 583 605 582 606 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_11 PF16622.5 29 ZNF667-202 - 610 6.4e-08 32.2 72.8 1 13 0.00046 0.46 10.3 0.4 6 26 145 165 142 166 0.90 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF667-202 - 610 6.4e-08 32.2 72.8 2 13 0.023 23 4.9 0.8 4 26 199 221 197 222 0.91 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF667-202 - 610 6.4e-08 32.2 72.8 3 13 0.0015 1.5 8.7 1.7 4 23 252 271 250 275 0.77 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF667-202 - 610 6.4e-08 32.2 72.8 4 13 8.4 8.4e+03 -3.3 0.1 7 14 283 290 279 290 0.69 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF667-202 - 610 6.4e-08 32.2 72.8 5 13 5 5e+03 -2.6 0.5 24 29 295 300 292 300 0.86 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF667-202 - 610 6.4e-08 32.2 72.8 6 13 0.03 29 4.5 0.0 4 15 329 340 327 351 0.70 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF667-202 - 610 6.4e-08 32.2 72.8 7 13 0.036 36 4.2 0.1 7 25 417 435 415 437 0.85 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF667-202 - 610 6.4e-08 32.2 72.8 8 13 2.8 2.8e+03 -1.8 0.1 5 21 443 459 440 464 0.69 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF667-202 - 610 6.4e-08 32.2 72.8 9 13 2.3e-07 0.00022 20.9 0.3 5 26 471 492 468 493 0.94 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF667-202 - 610 6.4e-08 32.2 72.8 10 13 0.012 12 5.7 0.1 7 26 501 520 498 521 0.91 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF667-202 - 610 6.4e-08 32.2 72.8 11 13 0.081 81 3.1 0.2 7 23 529 545 526 547 0.85 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF667-202 - 610 6.4e-08 32.2 72.8 12 13 0.00083 0.83 9.5 0.1 6 24 556 574 553 575 0.91 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF667-202 - 610 6.4e-08 32.2 72.8 13 13 0.00056 0.56 10.0 0.3 6 23 584 601 580 603 0.93 zinc-finger C2H2-type zf-C2H2_8 PF15909.5 98 ZNF667-202 - 610 1.2e-07 31.9 64.6 1 8 0.00016 0.16 12.3 3.5 17 91 124 196 108 202 0.82 C2H2-type zinc ribbon zf-C2H2_8 PF15909.5 98 ZNF667-202 - 610 1.2e-07 31.9 64.6 2 8 0.19 1.9e+02 2.5 0.4 40 77 202 238 194 254 0.66 C2H2-type zinc ribbon zf-C2H2_8 PF15909.5 98 ZNF667-202 - 610 1.2e-07 31.9 64.6 3 8 0.00075 0.75 10.1 3.2 36 72 251 289 227 306 0.74 C2H2-type zinc ribbon zf-C2H2_8 PF15909.5 98 ZNF667-202 - 610 1.2e-07 31.9 64.6 4 8 0.00041 0.41 11.0 3.1 25 88 319 379 306 384 0.78 C2H2-type zinc ribbon zf-C2H2_8 PF15909.5 98 ZNF667-202 - 610 1.2e-07 31.9 64.6 5 8 0.0019 1.9 8.8 5.3 34 90 384 438 378 440 0.82 C2H2-type zinc ribbon zf-C2H2_8 PF15909.5 98 ZNF667-202 - 610 1.2e-07 31.9 64.6 6 8 0.00052 0.52 10.6 3.5 29 91 436 495 427 501 0.82 C2H2-type zinc ribbon zf-C2H2_8 PF15909.5 98 ZNF667-202 - 610 1.2e-07 31.9 64.6 7 8 0.045 45 4.4 0.5 41 85 502 545 494 554 0.79 C2H2-type zinc ribbon zf-C2H2_8 PF15909.5 98 ZNF667-202 - 610 1.2e-07 31.9 64.6 8 8 0.0041 4.1 7.8 1.9 36 91 555 607 544 610 0.79 C2H2-type zinc ribbon # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF667-202.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF667-202.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF667-202.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF667-202.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF667-202.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:11:54 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF667-203.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF667-203.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF667-203.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF667-203.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF667-203.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:11:54 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF667-204.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF667-204.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF667-204.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF667-204.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF667-204.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:11:55 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF667-205.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF667-205.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF667-205.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF667-205.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF667-205.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:11:55 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZNF667-206 - 392 7.5e-78 253.8 89.1 1 15 5.6 5e+03 -1.8 0.0 6 17 1 12 1 18 0.81 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF667-206 - 392 7.5e-78 253.8 89.1 2 15 0.002 1.8 9.1 0.5 3 25 23 45 21 46 0.84 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF667-206 - 392 7.5e-78 253.8 89.1 3 15 0.0002 0.18 12.3 2.3 2 26 50 74 49 74 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF667-206 - 392 7.5e-78 253.8 89.1 4 15 0.53 4.8e+02 1.5 0.1 4 13 80 89 78 91 0.85 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF667-206 - 392 7.5e-78 253.8 89.1 5 15 9.9e-06 0.0089 16.4 0.2 7 25 104 122 96 123 0.90 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF667-206 - 392 7.5e-78 253.8 89.1 6 15 1.9e-10 1.7e-07 31.3 1.9 2 25 127 150 127 151 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF667-206 - 392 7.5e-78 253.8 89.1 7 15 5.4e-07 0.00048 20.4 0.7 5 24 158 177 155 179 0.89 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF667-206 - 392 7.5e-78 253.8 89.1 8 15 2.6e-08 2.4e-05 24.6 1.9 2 25 183 207 182 207 0.90 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF667-206 - 392 7.5e-78 253.8 89.1 9 15 1.1e-07 0.0001 22.6 1.0 1 25 211 235 211 236 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF667-206 - 392 7.5e-78 253.8 89.1 10 15 7e-12 6.2e-09 35.9 0.6 4 26 242 264 240 264 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF667-206 - 392 7.5e-78 253.8 89.1 11 15 4.1e-11 3.7e-08 33.4 0.3 1 25 267 291 267 292 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF667-206 - 392 7.5e-78 253.8 89.1 12 15 1.5e-11 1.3e-08 34.9 1.2 1 25 295 319 295 320 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF667-206 - 392 7.5e-78 253.8 89.1 13 15 2.2e-11 1.9e-08 34.3 0.2 2 26 324 348 323 348 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF667-206 - 392 7.5e-78 253.8 89.1 14 15 4.2e-11 3.7e-08 33.4 0.6 1 25 351 375 351 376 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF667-206 - 392 7.5e-78 253.8 89.1 15 15 1.3 1.2e+03 0.2 0.1 2 13 380 391 379 392 0.86 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZNF667-206 - 392 7.9e-64 208.7 92.7 1 13 0.0024 2.1 8.9 0.1 5 23 11 29 8 29 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF667-206 - 392 7.9e-64 208.7 92.7 2 13 1.7e-05 0.015 15.7 2.7 2 23 36 57 35 57 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF667-206 - 392 7.9e-64 208.7 92.7 3 13 0.00035 0.32 11.6 0.4 5 23 67 85 64 85 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF667-206 - 392 7.9e-64 208.7 92.7 4 13 2.7e-06 0.0024 18.2 1.0 1 23 112 134 112 134 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF667-206 - 392 7.9e-64 208.7 92.7 5 13 5.6e-08 5.1e-05 23.5 1.6 1 23 140 162 140 162 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF667-206 - 392 7.9e-64 208.7 92.7 6 13 3.7e-06 0.0033 17.8 5.2 1 23 168 190 168 190 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF667-206 - 392 7.9e-64 208.7 92.7 7 13 1.3e-07 0.00012 22.3 0.2 1 23 197 219 197 219 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF667-206 - 392 7.9e-64 208.7 92.7 8 13 6.6e-08 5.9e-05 23.3 1.1 1 23 225 247 225 247 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF667-206 - 392 7.9e-64 208.7 92.7 9 13 2.9e-08 2.6e-05 24.4 1.8 1 23 253 275 253 275 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF667-206 - 392 7.9e-64 208.7 92.7 10 13 4.2e-08 3.8e-05 23.9 0.3 1 23 281 303 281 303 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF667-206 - 392 7.9e-64 208.7 92.7 11 13 8.6e-08 7.7e-05 22.9 1.0 1 23 309 331 309 331 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF667-206 - 392 7.9e-64 208.7 92.7 12 13 5.4e-09 4.8e-06 26.7 0.2 1 23 337 359 337 359 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF667-206 - 392 7.9e-64 208.7 92.7 13 13 3.5e-09 3.1e-06 27.3 1.0 1 23 365 387 365 387 0.99 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZNF667-206 - 392 4.6e-32 107.9 88.4 1 13 0.1 92 4.3 0.2 6 23 12 29 10 30 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF667-206 - 392 4.6e-32 107.9 88.4 2 13 0.00075 0.67 10.9 2.3 2 23 36 57 35 58 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF667-206 - 392 4.6e-32 107.9 88.4 3 13 0.069 62 4.8 0.2 5 23 67 85 65 86 0.87 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF667-206 - 392 4.6e-32 107.9 88.4 4 13 0.00032 0.29 12.1 0.7 1 23 112 134 112 135 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF667-206 - 392 4.6e-32 107.9 88.4 5 13 0.00038 0.34 11.9 0.9 1 23 140 162 140 163 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF667-206 - 392 4.6e-32 107.9 88.4 6 13 0.0031 2.8 9.0 4.5 1 23 168 190 168 191 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF667-206 - 392 4.6e-32 107.9 88.4 7 13 4.6e-05 0.041 14.7 0.2 1 23 197 219 197 220 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF667-206 - 392 4.6e-32 107.9 88.4 8 13 0.00023 0.2 12.6 1.1 1 23 225 247 225 248 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF667-206 - 392 4.6e-32 107.9 88.4 9 13 9.5e-05 0.085 13.7 1.3 1 23 253 275 253 276 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF667-206 - 392 4.6e-32 107.9 88.4 10 13 6.1e-06 0.0055 17.4 0.4 1 23 281 303 281 304 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF667-206 - 392 4.6e-32 107.9 88.4 11 13 9.8e-05 0.088 13.7 0.8 1 23 309 331 309 332 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF667-206 - 392 4.6e-32 107.9 88.4 12 13 6.6e-07 0.00059 20.5 0.2 1 23 337 359 337 360 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF667-206 - 392 4.6e-32 107.9 88.4 13 13 2.2e-06 0.002 18.8 0.8 1 23 365 387 365 388 0.96 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF667-206 - 392 4.6e-19 67.9 80.5 1 12 0.059 53 4.0 1.6 4 24 37 57 36 60 0.89 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF667-206 - 392 4.6e-19 67.9 80.5 2 12 0.0035 3.2 7.9 0.2 2 22 112 132 112 137 0.82 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF667-206 - 392 4.6e-19 67.9 80.5 3 12 0.00054 0.48 10.5 0.2 2 24 140 162 140 165 0.90 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF667-206 - 392 4.6e-19 67.9 80.5 4 12 0.59 5.2e+02 0.8 4.9 2 24 168 190 167 193 0.83 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF667-206 - 392 4.6e-19 67.9 80.5 5 12 0.00097 0.87 9.7 0.2 2 12 197 207 196 208 0.91 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF667-206 - 392 4.6e-19 67.9 80.5 6 12 4.8e-05 0.043 13.8 0.7 2 24 225 247 225 250 0.89 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF667-206 - 392 4.6e-19 67.9 80.5 7 12 0.0021 1.9 8.6 1.3 2 24 253 275 253 277 0.90 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF667-206 - 392 4.6e-19 67.9 80.5 8 12 0.00046 0.41 10.7 0.4 2 12 281 291 281 292 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF667-206 - 392 4.6e-19 67.9 80.5 9 12 1.5 1.3e+03 -0.5 0.1 19 26 294 301 293 302 0.85 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF667-206 - 392 4.6e-19 67.9 80.5 10 12 4e-05 0.036 14.1 0.9 2 24 309 331 309 334 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF667-206 - 392 4.6e-19 67.9 80.5 11 12 7e-09 6.3e-06 26.1 0.8 2 26 337 361 337 362 0.96 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF667-206 - 392 4.6e-19 67.9 80.5 12 12 0.0004 0.36 10.9 1.7 2 26 365 389 365 390 0.92 C2H2-type zinc finger Zn-ribbon_8 PF09723.10 40 ZNF667-206 - 392 6.6e-11 42.2 60.4 1 10 0.022 20 5.4 2.1 10 36 18 44 11 48 0.71 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF667-206 - 392 6.6e-11 42.2 60.4 2 10 0.028 25 5.1 1.6 7 20 36 49 35 75 0.80 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF667-206 - 392 6.6e-11 42.2 60.4 3 10 7.6e-05 0.068 13.3 1.5 6 38 112 151 111 153 0.86 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF667-206 - 392 6.6e-11 42.2 60.4 4 10 0.11 1e+02 3.1 7.8 6 34 168 204 167 204 0.83 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF667-206 - 392 6.6e-11 42.2 60.4 5 10 0.00074 0.66 10.1 3.3 6 34 197 232 196 237 0.83 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF667-206 - 392 6.6e-11 42.2 60.4 6 10 0.00034 0.3 11.2 4.4 6 36 225 262 224 266 0.88 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF667-206 - 392 6.6e-11 42.2 60.4 7 10 0.00041 0.37 11.0 5.5 6 34 253 288 251 288 0.82 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF667-206 - 392 6.6e-11 42.2 60.4 8 10 6.6e-05 0.059 13.5 4.1 6 36 281 318 280 322 0.80 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF667-206 - 392 6.6e-11 42.2 60.4 9 10 0.0098 8.8 6.5 0.2 6 18 309 321 308 329 0.83 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF667-206 - 392 6.6e-11 42.2 60.4 10 10 2.9e-06 0.0026 17.8 2.4 6 38 337 376 336 377 0.88 Zinc ribbon domain zf-C2H2_jaz PF12171.8 27 ZNF667-206 - 392 6.6e-11 42.2 53.9 1 12 1.4 1.2e+03 -0.1 0.4 7 22 40 55 37 55 0.91 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF667-206 - 392 6.6e-11 42.2 53.9 2 12 0.044 39 4.7 0.0 7 22 68 83 68 83 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF667-206 - 392 6.6e-11 42.2 53.9 3 12 9.1 8.2e+03 -2.7 0.1 2 13 112 123 111 131 0.76 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF667-206 - 392 6.6e-11 42.2 53.9 4 12 0.027 24 5.4 0.1 2 22 140 160 139 160 0.89 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF667-206 - 392 6.6e-11 42.2 53.9 5 12 0.2 1.8e+02 2.6 4.1 4 22 170 188 168 188 0.88 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF667-206 - 392 6.6e-11 42.2 53.9 6 12 0.00019 0.17 12.2 0.1 2 22 197 217 196 217 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF667-206 - 392 6.6e-11 42.2 53.9 7 12 0.025 22 5.5 0.3 2 22 225 245 224 245 0.91 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF667-206 - 392 6.6e-11 42.2 53.9 8 12 0.0055 4.9 7.6 0.1 4 22 255 273 252 273 0.90 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF667-206 - 392 6.6e-11 42.2 53.9 9 12 0.021 19 5.7 0.2 2 22 281 301 280 301 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF667-206 - 392 6.6e-11 42.2 53.9 10 12 0.00085 0.76 10.1 0.1 2 24 309 331 308 331 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF667-206 - 392 6.6e-11 42.2 53.9 11 12 8e-05 0.072 13.4 0.1 2 24 337 359 336 360 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF667-206 - 392 6.6e-11 42.2 53.9 12 12 0.013 12 6.4 0.5 2 24 365 387 364 388 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_11 PF16622.5 29 ZNF667-206 - 392 5.2e-07 29.3 63.1 1 12 0.001 0.89 9.4 1.7 4 23 34 53 32 57 0.78 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF667-206 - 392 5.2e-07 29.3 63.1 2 12 4.9 4.4e+03 -2.5 0.1 4 14 62 72 60 72 0.71 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF667-206 - 392 5.2e-07 29.3 63.1 3 12 3.4 3.1e+03 -1.9 0.5 24 29 77 82 74 82 0.86 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF667-206 - 392 5.2e-07 29.3 63.1 4 12 0.02 18 5.2 0.0 4 15 111 122 109 133 0.70 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF667-206 - 392 5.2e-07 29.3 63.1 5 12 6 5.3e+03 -2.7 0.9 6 10 169 173 168 183 0.77 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF667-206 - 392 5.2e-07 29.3 63.1 6 12 0.024 21 5.0 0.1 7 25 199 217 197 219 0.85 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF667-206 - 392 5.2e-07 29.3 63.1 7 12 1.7 1.5e+03 -1.0 0.2 5 25 225 245 222 247 0.72 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF667-206 - 392 5.2e-07 29.3 63.1 8 12 1.5e-07 0.00013 21.6 0.3 5 26 253 274 250 275 0.94 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF667-206 - 392 5.2e-07 29.3 63.1 9 12 0.008 7.2 6.5 0.1 6 26 282 302 280 303 0.91 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF667-206 - 392 5.2e-07 29.3 63.1 10 12 0.054 48 3.8 0.2 7 23 311 327 308 329 0.85 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF667-206 - 392 5.2e-07 29.3 63.1 11 12 0.00055 0.49 10.2 0.1 6 24 338 356 335 357 0.91 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF667-206 - 392 5.2e-07 29.3 63.1 12 12 0.00037 0.33 10.7 0.3 6 23 366 383 362 385 0.93 zinc-finger C2H2-type zf-C2H2_8 PF15909.5 98 ZNF667-206 - 392 6.4e-07 29.6 51.8 1 6 0.00037 0.33 11.3 3.0 36 72 33 71 10 90 0.73 C2H2-type zinc ribbon zf-C2H2_8 PF15909.5 98 ZNF667-206 - 392 6.4e-07 29.6 51.8 2 6 0.00026 0.24 11.7 3.2 24 88 100 161 88 166 0.78 C2H2-type zinc ribbon zf-C2H2_8 PF15909.5 98 ZNF667-206 - 392 6.4e-07 29.6 51.8 3 6 0.00079 0.71 10.2 5.1 34 91 166 221 161 224 0.84 C2H2-type zinc ribbon zf-C2H2_8 PF15909.5 98 ZNF667-206 - 392 6.4e-07 29.6 51.8 4 6 0.00016 0.14 12.5 2.5 29 91 218 277 208 281 0.82 C2H2-type zinc ribbon zf-C2H2_8 PF15909.5 98 ZNF667-206 - 392 6.4e-07 29.6 51.8 5 6 0.03 27 5.1 0.5 42 85 285 327 277 336 0.79 C2H2-type zinc ribbon zf-C2H2_8 PF15909.5 98 ZNF667-206 - 392 6.4e-07 29.6 51.8 6 6 0.0019 1.7 9.0 1.8 30 91 330 389 322 392 0.78 C2H2-type zinc ribbon # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF667-206.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF667-206.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF667-206.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF667-206.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF667-206.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:11:55 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZNF667-207 - 553 5.3e-93 301.7 115.1 1 17 3.2e-06 0.0033 17.8 1.6 7 25 79 97 78 98 0.89 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF667-207 - 553 5.3e-93 301.7 115.1 2 17 1.5e-10 1.6e-07 31.4 0.5 1 25 101 125 101 126 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF667-207 - 553 5.3e-93 301.7 115.1 3 17 7.8e-07 0.00082 19.7 1.2 5 25 133 153 132 154 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF667-207 - 553 5.3e-93 301.7 115.1 4 17 0.00085 0.89 10.1 1.4 5 25 161 206 158 207 0.79 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF667-207 - 553 5.3e-93 301.7 115.1 5 17 0.00026 0.27 11.7 2.3 2 26 211 235 210 235 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF667-207 - 553 5.3e-93 301.7 115.1 6 17 0.67 7e+02 0.9 0.1 4 13 241 250 239 252 0.85 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF667-207 - 553 5.3e-93 301.7 115.1 7 17 1.3e-05 0.013 15.9 0.2 7 25 265 283 257 284 0.90 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF667-207 - 553 5.3e-93 301.7 115.1 8 17 2.5e-10 2.6e-07 30.8 1.9 2 25 288 311 288 312 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF667-207 - 553 5.3e-93 301.7 115.1 9 17 6.9e-07 0.00073 19.9 0.7 5 24 319 338 316 340 0.89 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF667-207 - 553 5.3e-93 301.7 115.1 10 17 3.4e-08 3.6e-05 24.0 1.9 2 25 344 368 343 368 0.90 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF667-207 - 553 5.3e-93 301.7 115.1 11 17 1.4e-07 0.00015 22.0 1.0 1 25 372 396 372 397 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF667-207 - 553 5.3e-93 301.7 115.1 12 17 9e-12 9.5e-09 35.3 0.6 4 26 403 425 401 425 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF667-207 - 553 5.3e-93 301.7 115.1 13 17 5.3e-11 5.6e-08 32.9 0.3 1 25 428 452 428 453 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF667-207 - 553 5.3e-93 301.7 115.1 14 17 1.9e-11 2e-08 34.3 1.2 1 25 456 480 456 481 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF667-207 - 553 5.3e-93 301.7 115.1 15 17 2.8e-11 2.9e-08 33.7 0.2 2 26 485 509 484 509 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF667-207 - 553 5.3e-93 301.7 115.1 16 17 5.4e-11 5.7e-08 32.8 0.6 1 25 512 536 512 537 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF667-207 - 553 5.3e-93 301.7 115.1 17 17 1.7 1.8e+03 -0.3 0.1 2 13 541 552 540 553 0.86 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZNF667-207 - 553 4.1e-76 247.4 116.5 1 16 1.5e-08 1.6e-05 25.1 1.2 2 23 88 109 87 109 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF667-207 - 553 4.1e-76 247.4 116.5 2 16 3.6e-05 0.038 14.4 0.5 1 23 115 137 115 137 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF667-207 - 553 4.1e-76 247.4 116.5 3 16 1.1e-07 0.00012 22.4 1.3 1 23 143 165 143 165 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF667-207 - 553 4.1e-76 247.4 116.5 4 16 0.0031 3.2 8.4 0.1 5 23 172 190 169 190 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF667-207 - 553 4.1e-76 247.4 116.5 5 16 2.1e-05 0.023 15.2 2.7 2 23 197 218 196 218 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF667-207 - 553 4.1e-76 247.4 116.5 6 16 0.00045 0.47 11.0 0.4 5 23 228 246 225 246 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF667-207 - 553 4.1e-76 247.4 116.5 7 16 3.5e-06 0.0037 17.6 1.0 1 23 273 295 273 295 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF667-207 - 553 4.1e-76 247.4 116.5 8 16 7.3e-08 7.7e-05 22.9 1.6 1 23 301 323 301 323 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF667-207 - 553 4.1e-76 247.4 116.5 9 16 4.8e-06 0.005 17.2 5.2 1 23 329 351 329 351 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF667-207 - 553 4.1e-76 247.4 116.5 10 16 1.7e-07 0.00018 21.8 0.2 1 23 358 380 358 380 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF667-207 - 553 4.1e-76 247.4 116.5 11 16 8.5e-08 9e-05 22.7 1.1 1 23 386 408 386 408 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF667-207 - 553 4.1e-76 247.4 116.5 12 16 3.7e-08 3.9e-05 23.9 1.8 1 23 414 436 414 436 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF667-207 - 553 4.1e-76 247.4 116.5 13 16 5.4e-08 5.7e-05 23.3 0.3 1 23 442 464 442 464 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF667-207 - 553 4.1e-76 247.4 116.5 14 16 1.1e-07 0.00012 22.4 1.0 1 23 470 492 470 492 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF667-207 - 553 4.1e-76 247.4 116.5 15 16 6.9e-09 7.3e-06 26.2 0.2 1 23 498 520 498 520 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF667-207 - 553 4.1e-76 247.4 116.5 16 16 4.5e-09 4.7e-06 26.8 1.0 1 23 526 548 526 548 0.99 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZNF667-207 - 553 1.4e-36 122.0 109.8 1 16 8.5e-05 0.09 13.7 0.8 2 23 88 109 87 110 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF667-207 - 553 1.4e-36 122.0 109.8 2 16 0.0035 3.7 8.7 0.5 1 23 115 137 115 138 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF667-207 - 553 1.4e-36 122.0 109.8 3 16 7.4e-05 0.078 13.9 0.5 1 23 143 165 143 166 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF667-207 - 553 1.4e-36 122.0 109.8 4 16 0.13 1.4e+02 3.7 0.2 6 23 173 190 171 191 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF667-207 - 553 1.4e-36 122.0 109.8 5 16 0.00097 1 10.4 2.3 2 23 197 218 196 219 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF667-207 - 553 1.4e-36 122.0 109.8 6 16 0.089 94 4.3 0.2 5 23 228 246 226 247 0.87 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF667-207 - 553 1.4e-36 122.0 109.8 7 16 0.00042 0.44 11.5 0.7 1 23 273 295 273 296 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF667-207 - 553 1.4e-36 122.0 109.8 8 16 0.00049 0.51 11.3 0.9 1 23 301 323 301 324 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF667-207 - 553 1.4e-36 122.0 109.8 9 16 0.0041 4.3 8.4 4.5 1 23 329 351 329 352 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF667-207 - 553 1.4e-36 122.0 109.8 10 16 6e-05 0.063 14.1 0.2 1 23 358 380 358 381 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF667-207 - 553 1.4e-36 122.0 109.8 11 16 0.00029 0.31 12.0 1.1 1 23 386 408 386 409 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF667-207 - 553 1.4e-36 122.0 109.8 12 16 0.00012 0.13 13.2 1.3 1 23 414 436 414 437 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF667-207 - 553 1.4e-36 122.0 109.8 13 16 7.9e-06 0.0083 16.9 0.4 1 23 442 464 442 465 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF667-207 - 553 1.4e-36 122.0 109.8 14 16 0.00013 0.13 13.1 0.8 1 23 470 492 470 493 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF667-207 - 553 1.4e-36 122.0 109.8 15 16 8.5e-07 0.0009 19.9 0.2 1 23 498 520 498 521 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF667-207 - 553 1.4e-36 122.0 109.8 16 16 2.9e-06 0.003 18.3 0.8 1 23 526 548 526 549 0.96 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF667-207 - 553 2.6e-18 65.6 100.8 1 15 0.073 78 3.4 0.8 3 12 88 97 88 102 0.91 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF667-207 - 553 2.6e-18 65.6 100.8 2 15 0.11 1.2e+02 2.9 0.5 2 12 115 125 115 129 0.91 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF667-207 - 553 2.6e-18 65.6 100.8 3 15 0.00027 0.28 11.2 0.3 2 24 143 165 142 167 0.85 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF667-207 - 553 2.6e-18 65.6 100.8 4 15 0.076 80 3.4 1.6 4 24 198 218 197 221 0.89 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF667-207 - 553 2.6e-18 65.6 100.8 5 15 0.0045 4.8 7.3 0.2 2 22 273 293 273 298 0.82 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF667-207 - 553 2.6e-18 65.6 100.8 6 15 0.00069 0.73 9.9 0.2 2 24 301 323 301 326 0.90 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF667-207 - 553 2.6e-18 65.6 100.8 7 15 0.75 7.9e+02 0.2 4.9 2 24 329 351 328 354 0.83 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF667-207 - 553 2.6e-18 65.6 100.8 8 15 0.0012 1.3 9.1 0.2 2 12 358 368 357 369 0.91 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF667-207 - 553 2.6e-18 65.6 100.8 9 15 6.2e-05 0.066 13.2 0.7 2 24 386 408 386 411 0.89 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF667-207 - 553 2.6e-18 65.6 100.8 10 15 0.0027 2.8 8.0 1.3 2 24 414 436 414 438 0.90 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF667-207 - 553 2.6e-18 65.6 100.8 11 15 0.00058 0.61 10.2 0.4 2 12 442 452 442 453 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF667-207 - 553 2.6e-18 65.6 100.8 12 15 1.8 1.9e+03 -1.0 0.1 19 26 455 462 454 463 0.85 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF667-207 - 553 2.6e-18 65.6 100.8 13 15 5.2e-05 0.055 13.5 0.9 2 24 470 492 470 495 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF667-207 - 553 2.6e-18 65.6 100.8 14 15 9e-09 9.5e-06 25.5 0.8 2 26 498 522 498 523 0.96 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF667-207 - 553 2.6e-18 65.6 100.8 15 15 0.00052 0.55 10.3 1.7 2 26 526 550 526 551 0.92 C2H2-type zinc finger Zn-ribbon_8 PF09723.10 40 ZNF667-207 - 553 2e-12 47.0 73.9 1 13 0.00083 0.88 9.7 2.6 7 38 88 126 86 128 0.84 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF667-207 - 553 2e-12 47.0 73.9 2 13 0.0016 1.7 8.8 3.0 6 35 115 151 114 156 0.85 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF667-207 - 553 2e-12 47.0 73.9 3 13 0.018 19 5.5 0.5 7 29 144 173 141 179 0.69 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF667-207 - 553 2e-12 47.0 73.9 4 13 0.028 30 4.8 2.1 10 36 179 205 171 209 0.71 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF667-207 - 553 2e-12 47.0 73.9 5 13 0.027 29 4.9 1.2 7 20 197 210 196 237 0.80 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF667-207 - 553 2e-12 47.0 73.9 6 13 0.00011 0.12 12.6 1.6 6 38 273 312 272 314 0.86 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF667-207 - 553 2e-12 47.0 73.9 7 13 0.068 71 3.6 7.2 6 34 329 365 328 368 0.83 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF667-207 - 553 2e-12 47.0 73.9 8 13 0.00093 0.98 9.6 3.2 6 34 358 393 357 398 0.83 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF667-207 - 553 2e-12 47.0 73.9 9 13 0.00032 0.34 11.1 3.9 6 36 386 423 385 427 0.88 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF667-207 - 553 2e-12 47.0 73.9 10 13 0.00047 0.49 10.5 5.3 6 34 414 449 413 449 0.82 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF667-207 - 553 2e-12 47.0 73.9 11 13 7.1e-05 0.075 13.2 3.8 6 36 442 479 441 484 0.80 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF667-207 - 553 2e-12 47.0 73.9 12 13 0.013 14 5.9 0.2 6 18 470 482 469 489 0.83 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF667-207 - 553 2e-12 47.0 73.9 13 13 3.9e-06 0.0041 17.2 2.4 6 38 498 537 497 538 0.88 Zinc ribbon domain zf-C2H2_jaz PF12171.8 27 ZNF667-207 - 553 2.9e-10 40.1 62.9 1 13 0.0083 8.8 6.8 0.1 3 22 88 107 86 107 0.91 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF667-207 - 553 2.9e-10 40.1 62.9 2 13 0.17 1.8e+02 2.6 0.1 2 12 115 125 114 135 0.78 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF667-207 - 553 2.9e-10 40.1 62.9 3 13 1.7 1.8e+03 -0.6 0.4 7 22 201 216 198 216 0.91 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF667-207 - 553 2.9e-10 40.1 62.9 4 13 0.056 59 4.1 0.0 7 22 229 244 229 244 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF667-207 - 553 2.9e-10 40.1 62.9 5 13 0.034 36 4.8 0.1 2 22 301 321 300 321 0.89 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF667-207 - 553 2.9e-10 40.1 62.9 6 13 0.25 2.6e+02 2.0 4.1 4 22 331 349 329 349 0.88 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF667-207 - 553 2.9e-10 40.1 62.9 7 13 0.00024 0.25 11.7 0.1 2 22 358 378 357 378 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF667-207 - 553 2.9e-10 40.1 62.9 8 13 0.032 34 4.9 0.3 2 22 386 406 385 406 0.91 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF667-207 - 553 2.9e-10 40.1 62.9 9 13 0.007 7.3 7.0 0.1 4 22 416 434 413 434 0.90 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF667-207 - 553 2.9e-10 40.1 62.9 10 13 0.027 28 5.1 0.2 2 22 442 462 441 462 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF667-207 - 553 2.9e-10 40.1 62.9 11 13 0.0011 1.1 9.6 0.1 2 24 470 492 469 492 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF667-207 - 553 2.9e-10 40.1 62.9 12 13 0.0001 0.11 12.8 0.1 2 24 498 520 497 521 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF667-207 - 553 2.9e-10 40.1 62.9 13 13 0.017 18 5.8 0.5 2 24 526 548 525 549 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_11 PF16622.5 29 ZNF667-207 - 553 1.6e-08 34.1 72.8 1 13 0.00039 0.41 10.4 0.4 6 26 88 108 85 109 0.90 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF667-207 - 553 1.6e-08 34.1 72.8 2 13 0.02 21 5.0 0.8 4 26 142 164 140 165 0.91 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF667-207 - 553 1.6e-08 34.1 72.8 3 13 0.0013 1.3 8.8 1.7 4 23 195 214 193 218 0.77 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF667-207 - 553 1.6e-08 34.1 72.8 4 13 7.2 7.6e+03 -3.2 0.1 7 14 226 233 222 233 0.69 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF667-207 - 553 1.6e-08 34.1 72.8 5 13 4.2 4.5e+03 -2.5 0.5 24 29 238 243 235 243 0.86 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF667-207 - 553 1.6e-08 34.1 72.8 6 13 0.025 26 4.7 0.0 4 15 272 283 270 294 0.70 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF667-207 - 553 1.6e-08 34.1 72.8 7 13 0.03 32 4.4 0.1 7 25 360 378 358 380 0.85 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF667-207 - 553 1.6e-08 34.1 72.8 8 13 2.4 2.5e+03 -1.7 0.1 5 21 386 402 383 407 0.69 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF667-207 - 553 1.6e-08 34.1 72.8 9 13 1.9e-07 0.0002 21.0 0.3 5 26 414 435 411 436 0.94 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF667-207 - 553 1.6e-08 34.1 72.8 10 13 0.01 11 5.9 0.1 6 26 443 463 441 464 0.91 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF667-207 - 553 1.6e-08 34.1 72.8 11 13 0.068 72 3.3 0.2 7 23 472 488 469 490 0.85 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF667-207 - 553 1.6e-08 34.1 72.8 12 13 0.0007 0.74 9.6 0.1 6 24 499 517 496 518 0.91 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF667-207 - 553 1.6e-08 34.1 72.8 13 13 0.00047 0.5 10.2 0.3 6 23 527 544 523 546 0.93 zinc-finger C2H2-type zf-C2H2_8 PF15909.5 98 ZNF667-207 - 553 4.7e-08 33.2 64.7 1 8 0.00014 0.14 12.4 3.6 17 91 67 139 51 145 0.82 C2H2-type zinc ribbon zf-C2H2_8 PF15909.5 98 ZNF667-207 - 553 4.7e-08 33.2 64.7 2 8 0.16 1.6e+02 2.6 0.4 40 78 145 182 137 197 0.66 C2H2-type zinc ribbon zf-C2H2_8 PF15909.5 98 ZNF667-207 - 553 4.7e-08 33.2 64.7 3 8 0.00056 0.59 10.5 3.2 36 72 194 232 170 251 0.73 C2H2-type zinc ribbon zf-C2H2_8 PF15909.5 98 ZNF667-207 - 553 4.7e-08 33.2 64.7 4 8 0.00036 0.38 11.1 3.2 25 88 262 322 249 327 0.78 C2H2-type zinc ribbon zf-C2H2_8 PF15909.5 98 ZNF667-207 - 553 4.7e-08 33.2 64.7 5 8 0.0012 1.2 9.4 5.3 34 91 327 382 321 385 0.84 C2H2-type zinc ribbon zf-C2H2_8 PF15909.5 98 ZNF667-207 - 553 4.7e-08 33.2 64.7 6 8 0.00028 0.29 11.4 2.8 29 91 379 438 370 443 0.82 C2H2-type zinc ribbon zf-C2H2_8 PF15909.5 98 ZNF667-207 - 553 4.7e-08 33.2 64.7 7 8 0.037 39 4.6 0.4 41 85 445 488 437 497 0.79 C2H2-type zinc ribbon zf-C2H2_8 PF15909.5 98 ZNF667-207 - 553 4.7e-08 33.2 64.7 8 8 0.0033 3.5 8.0 1.9 36 91 498 550 487 553 0.79 C2H2-type zinc ribbon # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF667-207.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF667-207.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF667-207.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF667-207.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF667-207.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:11:56 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZNF667-208 - 392 7.5e-78 253.8 89.1 1 15 5.6 5e+03 -1.8 0.0 6 17 1 12 1 18 0.81 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF667-208 - 392 7.5e-78 253.8 89.1 2 15 0.002 1.8 9.1 0.5 3 25 23 45 21 46 0.84 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF667-208 - 392 7.5e-78 253.8 89.1 3 15 0.0002 0.18 12.3 2.3 2 26 50 74 49 74 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF667-208 - 392 7.5e-78 253.8 89.1 4 15 0.53 4.8e+02 1.5 0.1 4 13 80 89 78 91 0.85 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF667-208 - 392 7.5e-78 253.8 89.1 5 15 9.9e-06 0.0089 16.4 0.2 7 25 104 122 96 123 0.90 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF667-208 - 392 7.5e-78 253.8 89.1 6 15 1.9e-10 1.7e-07 31.3 1.9 2 25 127 150 127 151 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF667-208 - 392 7.5e-78 253.8 89.1 7 15 5.4e-07 0.00048 20.4 0.7 5 24 158 177 155 179 0.89 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF667-208 - 392 7.5e-78 253.8 89.1 8 15 2.6e-08 2.4e-05 24.6 1.9 2 25 183 207 182 207 0.90 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF667-208 - 392 7.5e-78 253.8 89.1 9 15 1.1e-07 0.0001 22.6 1.0 1 25 211 235 211 236 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF667-208 - 392 7.5e-78 253.8 89.1 10 15 7e-12 6.2e-09 35.9 0.6 4 26 242 264 240 264 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF667-208 - 392 7.5e-78 253.8 89.1 11 15 4.1e-11 3.7e-08 33.4 0.3 1 25 267 291 267 292 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF667-208 - 392 7.5e-78 253.8 89.1 12 15 1.5e-11 1.3e-08 34.9 1.2 1 25 295 319 295 320 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF667-208 - 392 7.5e-78 253.8 89.1 13 15 2.2e-11 1.9e-08 34.3 0.2 2 26 324 348 323 348 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF667-208 - 392 7.5e-78 253.8 89.1 14 15 4.2e-11 3.7e-08 33.4 0.6 1 25 351 375 351 376 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF667-208 - 392 7.5e-78 253.8 89.1 15 15 1.3 1.2e+03 0.2 0.1 2 13 380 391 379 392 0.86 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZNF667-208 - 392 7.9e-64 208.7 92.7 1 13 0.0024 2.1 8.9 0.1 5 23 11 29 8 29 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF667-208 - 392 7.9e-64 208.7 92.7 2 13 1.7e-05 0.015 15.7 2.7 2 23 36 57 35 57 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF667-208 - 392 7.9e-64 208.7 92.7 3 13 0.00035 0.32 11.6 0.4 5 23 67 85 64 85 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF667-208 - 392 7.9e-64 208.7 92.7 4 13 2.7e-06 0.0024 18.2 1.0 1 23 112 134 112 134 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF667-208 - 392 7.9e-64 208.7 92.7 5 13 5.6e-08 5.1e-05 23.5 1.6 1 23 140 162 140 162 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF667-208 - 392 7.9e-64 208.7 92.7 6 13 3.7e-06 0.0033 17.8 5.2 1 23 168 190 168 190 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF667-208 - 392 7.9e-64 208.7 92.7 7 13 1.3e-07 0.00012 22.3 0.2 1 23 197 219 197 219 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF667-208 - 392 7.9e-64 208.7 92.7 8 13 6.6e-08 5.9e-05 23.3 1.1 1 23 225 247 225 247 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF667-208 - 392 7.9e-64 208.7 92.7 9 13 2.9e-08 2.6e-05 24.4 1.8 1 23 253 275 253 275 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF667-208 - 392 7.9e-64 208.7 92.7 10 13 4.2e-08 3.8e-05 23.9 0.3 1 23 281 303 281 303 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF667-208 - 392 7.9e-64 208.7 92.7 11 13 8.6e-08 7.7e-05 22.9 1.0 1 23 309 331 309 331 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF667-208 - 392 7.9e-64 208.7 92.7 12 13 5.4e-09 4.8e-06 26.7 0.2 1 23 337 359 337 359 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF667-208 - 392 7.9e-64 208.7 92.7 13 13 3.5e-09 3.1e-06 27.3 1.0 1 23 365 387 365 387 0.99 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZNF667-208 - 392 4.6e-32 107.9 88.4 1 13 0.1 92 4.3 0.2 6 23 12 29 10 30 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF667-208 - 392 4.6e-32 107.9 88.4 2 13 0.00075 0.67 10.9 2.3 2 23 36 57 35 58 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF667-208 - 392 4.6e-32 107.9 88.4 3 13 0.069 62 4.8 0.2 5 23 67 85 65 86 0.87 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF667-208 - 392 4.6e-32 107.9 88.4 4 13 0.00032 0.29 12.1 0.7 1 23 112 134 112 135 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF667-208 - 392 4.6e-32 107.9 88.4 5 13 0.00038 0.34 11.9 0.9 1 23 140 162 140 163 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF667-208 - 392 4.6e-32 107.9 88.4 6 13 0.0031 2.8 9.0 4.5 1 23 168 190 168 191 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF667-208 - 392 4.6e-32 107.9 88.4 7 13 4.6e-05 0.041 14.7 0.2 1 23 197 219 197 220 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF667-208 - 392 4.6e-32 107.9 88.4 8 13 0.00023 0.2 12.6 1.1 1 23 225 247 225 248 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF667-208 - 392 4.6e-32 107.9 88.4 9 13 9.5e-05 0.085 13.7 1.3 1 23 253 275 253 276 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF667-208 - 392 4.6e-32 107.9 88.4 10 13 6.1e-06 0.0055 17.4 0.4 1 23 281 303 281 304 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF667-208 - 392 4.6e-32 107.9 88.4 11 13 9.8e-05 0.088 13.7 0.8 1 23 309 331 309 332 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF667-208 - 392 4.6e-32 107.9 88.4 12 13 6.6e-07 0.00059 20.5 0.2 1 23 337 359 337 360 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF667-208 - 392 4.6e-32 107.9 88.4 13 13 2.2e-06 0.002 18.8 0.8 1 23 365 387 365 388 0.96 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF667-208 - 392 4.6e-19 67.9 80.5 1 12 0.059 53 4.0 1.6 4 24 37 57 36 60 0.89 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF667-208 - 392 4.6e-19 67.9 80.5 2 12 0.0035 3.2 7.9 0.2 2 22 112 132 112 137 0.82 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF667-208 - 392 4.6e-19 67.9 80.5 3 12 0.00054 0.48 10.5 0.2 2 24 140 162 140 165 0.90 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF667-208 - 392 4.6e-19 67.9 80.5 4 12 0.59 5.2e+02 0.8 4.9 2 24 168 190 167 193 0.83 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF667-208 - 392 4.6e-19 67.9 80.5 5 12 0.00097 0.87 9.7 0.2 2 12 197 207 196 208 0.91 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF667-208 - 392 4.6e-19 67.9 80.5 6 12 4.8e-05 0.043 13.8 0.7 2 24 225 247 225 250 0.89 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF667-208 - 392 4.6e-19 67.9 80.5 7 12 0.0021 1.9 8.6 1.3 2 24 253 275 253 277 0.90 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF667-208 - 392 4.6e-19 67.9 80.5 8 12 0.00046 0.41 10.7 0.4 2 12 281 291 281 292 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF667-208 - 392 4.6e-19 67.9 80.5 9 12 1.5 1.3e+03 -0.5 0.1 19 26 294 301 293 302 0.85 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF667-208 - 392 4.6e-19 67.9 80.5 10 12 4e-05 0.036 14.1 0.9 2 24 309 331 309 334 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF667-208 - 392 4.6e-19 67.9 80.5 11 12 7e-09 6.3e-06 26.1 0.8 2 26 337 361 337 362 0.96 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF667-208 - 392 4.6e-19 67.9 80.5 12 12 0.0004 0.36 10.9 1.7 2 26 365 389 365 390 0.92 C2H2-type zinc finger Zn-ribbon_8 PF09723.10 40 ZNF667-208 - 392 6.6e-11 42.2 60.4 1 10 0.022 20 5.4 2.1 10 36 18 44 11 48 0.71 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF667-208 - 392 6.6e-11 42.2 60.4 2 10 0.028 25 5.1 1.6 7 20 36 49 35 75 0.80 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF667-208 - 392 6.6e-11 42.2 60.4 3 10 7.6e-05 0.068 13.3 1.5 6 38 112 151 111 153 0.86 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF667-208 - 392 6.6e-11 42.2 60.4 4 10 0.11 1e+02 3.1 7.8 6 34 168 204 167 204 0.83 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF667-208 - 392 6.6e-11 42.2 60.4 5 10 0.00074 0.66 10.1 3.3 6 34 197 232 196 237 0.83 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF667-208 - 392 6.6e-11 42.2 60.4 6 10 0.00034 0.3 11.2 4.4 6 36 225 262 224 266 0.88 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF667-208 - 392 6.6e-11 42.2 60.4 7 10 0.00041 0.37 11.0 5.5 6 34 253 288 251 288 0.82 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF667-208 - 392 6.6e-11 42.2 60.4 8 10 6.6e-05 0.059 13.5 4.1 6 36 281 318 280 322 0.80 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF667-208 - 392 6.6e-11 42.2 60.4 9 10 0.0098 8.8 6.5 0.2 6 18 309 321 308 329 0.83 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF667-208 - 392 6.6e-11 42.2 60.4 10 10 2.9e-06 0.0026 17.8 2.4 6 38 337 376 336 377 0.88 Zinc ribbon domain zf-C2H2_jaz PF12171.8 27 ZNF667-208 - 392 6.6e-11 42.2 53.9 1 12 1.4 1.2e+03 -0.1 0.4 7 22 40 55 37 55 0.91 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF667-208 - 392 6.6e-11 42.2 53.9 2 12 0.044 39 4.7 0.0 7 22 68 83 68 83 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF667-208 - 392 6.6e-11 42.2 53.9 3 12 9.1 8.2e+03 -2.7 0.1 2 13 112 123 111 131 0.76 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF667-208 - 392 6.6e-11 42.2 53.9 4 12 0.027 24 5.4 0.1 2 22 140 160 139 160 0.89 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF667-208 - 392 6.6e-11 42.2 53.9 5 12 0.2 1.8e+02 2.6 4.1 4 22 170 188 168 188 0.88 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF667-208 - 392 6.6e-11 42.2 53.9 6 12 0.00019 0.17 12.2 0.1 2 22 197 217 196 217 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF667-208 - 392 6.6e-11 42.2 53.9 7 12 0.025 22 5.5 0.3 2 22 225 245 224 245 0.91 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF667-208 - 392 6.6e-11 42.2 53.9 8 12 0.0055 4.9 7.6 0.1 4 22 255 273 252 273 0.90 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF667-208 - 392 6.6e-11 42.2 53.9 9 12 0.021 19 5.7 0.2 2 22 281 301 280 301 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF667-208 - 392 6.6e-11 42.2 53.9 10 12 0.00085 0.76 10.1 0.1 2 24 309 331 308 331 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF667-208 - 392 6.6e-11 42.2 53.9 11 12 8e-05 0.072 13.4 0.1 2 24 337 359 336 360 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF667-208 - 392 6.6e-11 42.2 53.9 12 12 0.013 12 6.4 0.5 2 24 365 387 364 388 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_11 PF16622.5 29 ZNF667-208 - 392 5.2e-07 29.3 63.1 1 12 0.001 0.89 9.4 1.7 4 23 34 53 32 57 0.78 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF667-208 - 392 5.2e-07 29.3 63.1 2 12 4.9 4.4e+03 -2.5 0.1 4 14 62 72 60 72 0.71 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF667-208 - 392 5.2e-07 29.3 63.1 3 12 3.4 3.1e+03 -1.9 0.5 24 29 77 82 74 82 0.86 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF667-208 - 392 5.2e-07 29.3 63.1 4 12 0.02 18 5.2 0.0 4 15 111 122 109 133 0.70 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF667-208 - 392 5.2e-07 29.3 63.1 5 12 6 5.3e+03 -2.7 0.9 6 10 169 173 168 183 0.77 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF667-208 - 392 5.2e-07 29.3 63.1 6 12 0.024 21 5.0 0.1 7 25 199 217 197 219 0.85 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF667-208 - 392 5.2e-07 29.3 63.1 7 12 1.7 1.5e+03 -1.0 0.2 5 25 225 245 222 247 0.72 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF667-208 - 392 5.2e-07 29.3 63.1 8 12 1.5e-07 0.00013 21.6 0.3 5 26 253 274 250 275 0.94 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF667-208 - 392 5.2e-07 29.3 63.1 9 12 0.008 7.2 6.5 0.1 6 26 282 302 280 303 0.91 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF667-208 - 392 5.2e-07 29.3 63.1 10 12 0.054 48 3.8 0.2 7 23 311 327 308 329 0.85 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF667-208 - 392 5.2e-07 29.3 63.1 11 12 0.00055 0.49 10.2 0.1 6 24 338 356 335 357 0.91 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF667-208 - 392 5.2e-07 29.3 63.1 12 12 0.00037 0.33 10.7 0.3 6 23 366 383 362 385 0.93 zinc-finger C2H2-type zf-C2H2_8 PF15909.5 98 ZNF667-208 - 392 6.4e-07 29.6 51.8 1 6 0.00037 0.33 11.3 3.0 36 72 33 71 10 90 0.73 C2H2-type zinc ribbon zf-C2H2_8 PF15909.5 98 ZNF667-208 - 392 6.4e-07 29.6 51.8 2 6 0.00026 0.24 11.7 3.2 24 88 100 161 88 166 0.78 C2H2-type zinc ribbon zf-C2H2_8 PF15909.5 98 ZNF667-208 - 392 6.4e-07 29.6 51.8 3 6 0.00079 0.71 10.2 5.1 34 91 166 221 161 224 0.84 C2H2-type zinc ribbon zf-C2H2_8 PF15909.5 98 ZNF667-208 - 392 6.4e-07 29.6 51.8 4 6 0.00016 0.14 12.5 2.5 29 91 218 277 208 281 0.82 C2H2-type zinc ribbon zf-C2H2_8 PF15909.5 98 ZNF667-208 - 392 6.4e-07 29.6 51.8 5 6 0.03 27 5.1 0.5 42 85 285 327 277 336 0.79 C2H2-type zinc ribbon zf-C2H2_8 PF15909.5 98 ZNF667-208 - 392 6.4e-07 29.6 51.8 6 6 0.0019 1.7 9.0 1.8 30 91 330 389 322 392 0.78 C2H2-type zinc ribbon # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF667-208.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF667-208.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF667-208.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF667-208.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF667-208.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:11:58 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZNF669-201 - 464 3.3e-58 191.7 74.9 1 10 0.0027 3 8.4 0.2 10 26 184 200 182 200 0.89 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF669-201 - 464 3.3e-58 191.7 74.9 2 10 8.1e-07 0.00091 19.6 0.5 2 26 204 233 204 233 0.85 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF669-201 - 464 3.3e-58 191.7 74.9 3 10 1.2e-06 0.0014 19.0 0.2 2 24 237 259 236 260 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF669-201 - 464 3.3e-58 191.7 74.9 4 10 4.4e-12 4.9e-09 36.2 1.9 3 25 266 288 264 288 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF669-201 - 464 3.3e-58 191.7 74.9 5 10 2.8e-10 3.1e-07 30.5 2.6 5 24 296 315 295 316 0.97 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF669-201 - 464 3.3e-58 191.7 74.9 6 10 6.2e-10 6.9e-07 29.4 5.5 2 25 321 344 320 345 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF669-201 - 464 3.3e-58 191.7 74.9 7 10 2.1e-10 2.3e-07 30.9 0.4 1 25 348 372 348 373 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF669-201 - 464 3.3e-58 191.7 74.9 8 10 2.5e-09 2.8e-06 27.5 2.0 5 25 380 400 377 401 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF669-201 - 464 3.3e-58 191.7 74.9 9 10 1.4e-10 1.6e-07 31.4 2.3 5 26 408 429 404 429 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF669-201 - 464 3.3e-58 191.7 74.9 10 10 0.2 2.2e+02 2.5 0.6 1 9 432 440 432 444 0.89 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZNF669-201 - 464 2.5e-36 122.1 87.1 1 10 0.25 2.8e+02 2.3 0.3 5 13 67 75 64 76 0.87 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF669-201 - 464 2.5e-36 122.1 87.1 2 10 7.3e-08 8.2e-05 22.9 1.6 2 23 190 211 189 211 0.94 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF669-201 - 464 2.5e-36 122.1 87.1 3 10 8.8e-06 0.0099 16.3 0.3 1 23 222 244 222 244 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF669-201 - 464 2.5e-36 122.1 87.1 4 10 2.6e-07 0.00029 21.1 1.2 1 23 250 272 250 272 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF669-201 - 464 2.5e-36 122.1 87.1 5 10 8.2e-05 0.091 13.3 1.7 1 23 278 300 278 300 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF669-201 - 464 2.5e-36 122.1 87.1 6 10 4.7e-06 0.0052 17.2 5.6 1 23 306 328 306 328 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF669-201 - 464 2.5e-36 122.1 87.1 7 10 0.00052 0.58 10.7 3.8 1 23 334 356 334 356 0.95 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF669-201 - 464 2.5e-36 122.1 87.1 8 10 4.8e-08 5.4e-05 23.4 3.3 1 23 362 384 362 384 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF669-201 - 464 2.5e-36 122.1 87.1 9 10 9.6e-07 0.0011 19.3 1.4 1 23 390 412 390 412 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF669-201 - 464 2.5e-36 122.1 87.1 10 10 9.2e-09 1e-05 25.7 3.7 1 23 418 440 418 440 0.98 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZNF669-201 - 464 2.6e-26 90.0 84.3 1 10 5.3 6e+03 -1.3 0.6 6 14 68 76 64 79 0.74 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF669-201 - 464 2.6e-26 90.0 84.3 2 10 2.8e-06 0.0031 18.2 2.0 2 23 190 211 189 212 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF669-201 - 464 2.6e-26 90.0 84.3 3 10 7.5e-07 0.00084 20.0 0.4 1 23 222 244 222 245 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF669-201 - 464 2.6e-26 90.0 84.3 4 10 3e-05 0.033 15.0 0.9 1 23 250 272 250 273 0.97 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF669-201 - 464 2.6e-26 90.0 84.3 5 10 9.5e-05 0.11 13.4 1.7 1 23 278 300 278 301 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF669-201 - 464 2.6e-26 90.0 84.3 6 10 3e-05 0.034 15.0 4.7 1 23 306 328 306 329 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF669-201 - 464 2.6e-26 90.0 84.3 7 10 0.00027 0.3 12.0 3.0 1 19 334 352 334 356 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF669-201 - 464 2.6e-26 90.0 84.3 8 10 3.6e-06 0.004 17.9 3.0 1 23 362 384 362 385 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF669-201 - 464 2.6e-26 90.0 84.3 9 10 0.00012 0.13 13.2 1.3 1 23 390 412 390 413 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF669-201 - 464 2.6e-26 90.0 84.3 10 10 9.7e-06 0.011 16.5 2.2 1 23 418 440 418 441 0.96 C2H2-type zinc finger KRAB PF01352.27 42 ZNF669-201 - 464 6.4e-25 86.5 0.4 1 1 9.1e-28 1e-24 85.9 0.4 1 42 89 130 89 130 0.99 KRAB box zf-C2H2_6 PF13912.6 27 ZNF669-201 - 464 5.6e-12 45.3 70.4 1 9 0.0011 1.3 9.1 0.3 3 12 190 199 190 202 0.92 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF669-201 - 464 5.6e-12 45.3 70.4 2 9 0.0075 8.5 6.5 0.2 2 21 222 241 221 246 0.77 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF669-201 - 464 5.6e-12 45.3 70.4 3 9 0.00031 0.34 10.9 0.6 1 24 249 272 249 275 0.81 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF669-201 - 464 5.6e-12 45.3 70.4 4 9 0.0021 2.4 8.3 1.0 2 11 278 287 278 288 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF669-201 - 464 5.6e-12 45.3 70.4 5 9 0.0011 1.3 9.2 4.0 2 12 306 316 306 328 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF669-201 - 464 5.6e-12 45.3 70.4 6 9 0.01 11 6.1 2.9 2 20 334 352 334 356 0.86 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF669-201 - 464 5.6e-12 45.3 70.4 7 9 1.2e-06 0.0013 18.7 3.9 2 24 362 384 362 387 0.96 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF669-201 - 464 5.6e-12 45.3 70.4 8 9 0.00094 1.1 9.4 0.9 2 20 390 408 390 414 0.87 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF669-201 - 464 5.6e-12 45.3 70.4 9 9 0.0031 3.5 7.7 2.1 2 24 418 440 418 443 0.91 C2H2-type zinc finger # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF669-201.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF669-201.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF669-201.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF669-201.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF669-201.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:11:58 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- KRAB PF01352.27 42 ZNF669-202 - 71 1.6e-25 88.5 1.0 1 1 1.3e-29 2.3e-25 88.0 1.0 1 41 3 43 3 44 0.97 KRAB box # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF669-202.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF669-202.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF669-202.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF669-202.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF669-202.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:11:58 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- KRAB PF01352.27 42 ZNF669-203 - 61 7.2e-25 86.4 0.8 1 1 5.3e-29 9.5e-25 86.0 0.8 1 40 3 42 3 42 0.98 KRAB box # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF669-203.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF669-203.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF669-203.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF669-203.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF669-203.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:11:59 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZNF669-204 - 378 3.1e-59 194.9 74.9 1 10 0.0022 2.3 8.8 0.2 10 26 98 114 96 114 0.89 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF669-204 - 378 3.1e-59 194.9 74.9 2 10 6.7e-07 0.0007 19.9 0.5 2 26 118 147 118 147 0.85 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF669-204 - 378 3.1e-59 194.9 74.9 3 10 1e-06 0.0011 19.3 0.2 2 24 151 173 150 174 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF669-204 - 378 3.1e-59 194.9 74.9 4 10 3.6e-12 3.8e-09 36.6 1.9 3 25 180 202 178 202 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF669-204 - 378 3.1e-59 194.9 74.9 5 10 2.3e-10 2.4e-07 30.8 2.6 5 24 210 229 209 230 0.97 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF669-204 - 378 3.1e-59 194.9 74.9 6 10 5.1e-10 5.4e-07 29.8 5.5 2 25 235 258 234 259 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF669-204 - 378 3.1e-59 194.9 74.9 7 10 1.7e-10 1.8e-07 31.3 0.4 1 25 262 286 262 287 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF669-204 - 378 3.1e-59 194.9 74.9 8 10 2.1e-09 2.2e-06 27.8 2.0 5 25 294 314 291 315 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF669-204 - 378 3.1e-59 194.9 74.9 9 10 1.2e-10 1.2e-07 31.8 2.3 5 26 322 343 318 343 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF669-204 - 378 3.1e-59 194.9 74.9 10 10 0.17 1.8e+02 2.8 0.6 1 9 346 354 346 358 0.89 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZNF669-204 - 378 9e-38 126.7 81.2 1 9 6e-08 6.4e-05 23.2 1.6 2 23 104 125 103 125 0.94 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF669-204 - 378 9e-38 126.7 81.2 2 9 7.3e-06 0.0077 16.6 0.3 1 23 136 158 136 158 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF669-204 - 378 9e-38 126.7 81.2 3 9 2.1e-07 0.00022 21.5 1.2 1 23 164 186 164 186 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF669-204 - 378 9e-38 126.7 81.2 4 9 6.7e-05 0.071 13.6 1.7 1 23 192 214 192 214 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF669-204 - 378 9e-38 126.7 81.2 5 9 3.9e-06 0.0041 17.5 5.6 1 23 220 242 220 242 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF669-204 - 378 9e-38 126.7 81.2 6 9 0.00043 0.45 11.1 3.8 1 23 248 270 248 270 0.95 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF669-204 - 378 9e-38 126.7 81.2 7 9 4e-08 4.2e-05 23.8 3.3 1 23 276 298 276 298 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF669-204 - 378 9e-38 126.7 81.2 8 9 8e-07 0.00084 19.7 1.4 1 23 304 326 304 326 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF669-204 - 378 9e-38 126.7 81.2 9 9 7.6e-09 8e-06 26.0 3.7 1 23 332 354 332 354 0.98 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZNF669-204 - 378 4.9e-29 98.5 77.3 1 9 2.3e-06 0.0024 18.5 2.0 2 23 104 125 103 126 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF669-204 - 378 4.9e-29 98.5 77.3 2 9 6.2e-07 0.00065 20.3 0.4 1 23 136 158 136 159 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF669-204 - 378 4.9e-29 98.5 77.3 3 9 2.4e-05 0.026 15.4 0.9 1 23 164 186 164 187 0.97 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF669-204 - 378 4.9e-29 98.5 77.3 4 9 7.8e-05 0.082 13.8 1.7 1 23 192 214 192 215 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF669-204 - 378 4.9e-29 98.5 77.3 5 9 2.5e-05 0.026 15.3 4.7 1 23 220 242 220 243 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF669-204 - 378 4.9e-29 98.5 77.3 6 9 0.00022 0.23 12.4 3.0 1 19 248 266 248 270 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF669-204 - 378 4.9e-29 98.5 77.3 7 9 3e-06 0.0031 18.2 3.0 1 23 276 298 276 299 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF669-204 - 378 4.9e-29 98.5 77.3 8 9 9.6e-05 0.1 13.5 1.3 1 23 304 326 304 327 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF669-204 - 378 4.9e-29 98.5 77.3 9 9 8e-06 0.0084 16.9 2.2 1 23 332 354 332 355 0.96 C2H2-type zinc finger KRAB PF01352.27 42 ZNF669-204 - 378 4.9e-25 86.9 0.4 1 1 7.3e-28 7.7e-25 86.3 0.4 1 42 3 44 3 44 0.99 KRAB box zf-C2H2_6 PF13912.6 27 ZNF669-204 - 378 7.6e-13 48.1 70.4 1 9 0.00096 1 9.5 0.3 3 12 104 113 104 116 0.92 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF669-204 - 378 7.6e-13 48.1 70.4 2 9 0.0063 6.6 6.9 0.2 2 21 136 155 135 160 0.77 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF669-204 - 378 7.6e-13 48.1 70.4 3 9 0.00026 0.27 11.3 0.6 1 24 163 186 163 189 0.81 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF669-204 - 378 7.6e-13 48.1 70.4 4 9 0.0018 1.9 8.6 1.0 2 11 192 201 192 202 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF669-204 - 378 7.6e-13 48.1 70.4 5 9 0.00094 0.99 9.5 4.0 2 12 220 230 220 242 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF669-204 - 378 7.6e-13 48.1 70.4 6 9 0.0085 9 6.4 2.9 2 20 248 266 248 270 0.86 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF669-204 - 378 7.6e-13 48.1 70.4 7 9 9.5e-07 0.001 19.0 3.9 2 24 276 298 276 301 0.96 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF669-204 - 378 7.6e-13 48.1 70.4 8 9 0.00078 0.83 9.7 0.9 2 20 304 322 304 328 0.87 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF669-204 - 378 7.6e-13 48.1 70.4 9 9 0.0026 2.7 8.1 2.1 2 24 332 354 332 357 0.91 C2H2-type zinc finger Zn-ribbon_8 PF09723.10 40 ZNF669-204 - 378 1.5e-07 31.4 53.6 1 9 0.41 4.3e+02 1.1 0.2 7 15 104 112 97 119 0.80 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF669-204 - 378 1.5e-07 31.4 53.6 2 9 0.0013 1.4 9.1 3.4 5 34 135 171 135 172 0.69 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF669-204 - 378 1.5e-07 31.4 53.6 3 9 0.00014 0.14 12.3 3.6 6 35 164 200 162 202 0.84 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF669-204 - 378 1.5e-07 31.4 53.6 4 9 0.00014 0.15 12.2 6.8 6 36 192 229 191 230 0.82 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF669-204 - 378 1.5e-07 31.4 53.6 5 9 0.0043 4.6 7.4 2.7 6 22 220 236 219 243 0.79 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF669-204 - 378 1.5e-07 31.4 53.6 6 9 0.00072 0.76 10.0 6.1 6 38 248 287 247 288 0.82 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF669-204 - 378 1.5e-07 31.4 53.6 7 9 0.00058 0.61 10.2 0.6 6 20 276 290 275 297 0.88 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF669-204 - 378 1.5e-07 31.4 53.6 8 9 2.2e-05 0.023 14.8 3.6 6 38 304 343 303 345 0.77 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF669-204 - 378 1.5e-07 31.4 53.6 9 9 0.01 11 6.3 0.5 6 17 332 343 330 352 0.80 Zinc ribbon domain # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF669-204.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF669-204.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF669-204.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF669-204.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF669-204.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:11:59 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF669-205.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF669-205.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF669-205.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF669-205.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF669-205.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:12:00 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZNF670-201 - 389 1.8e-59 195.6 95.9 1 12 0.0016 1.9 9.1 2.5 9 24 97 112 94 114 0.87 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF670-201 - 389 1.8e-59 195.6 95.9 2 12 1.3e-05 0.015 15.7 1.2 2 22 118 138 117 139 0.90 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF670-201 - 389 1.8e-59 195.6 95.9 3 12 0.00044 0.52 10.8 0.8 11 25 137 151 137 152 0.90 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF670-201 - 389 1.8e-59 195.6 95.9 4 12 0.022 26 5.4 0.1 3 16 157 170 155 178 0.87 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF670-201 - 389 1.8e-59 195.6 95.9 5 12 3.1e-05 0.037 14.5 3.2 10 25 192 207 191 208 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF670-201 - 389 1.8e-59 195.6 95.9 6 12 2e-11 2.4e-08 34.0 2.5 2 25 212 235 211 235 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF670-201 - 389 1.8e-59 195.6 95.9 7 12 4.1e-13 4.9e-10 39.4 1.0 1 25 239 263 239 264 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF670-201 - 389 1.8e-59 195.6 95.9 8 12 3.7e-10 4.4e-07 30.0 3.3 5 25 271 291 270 292 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF670-201 - 389 1.8e-59 195.6 95.9 9 12 2.3e-11 2.8e-08 33.8 1.7 2 26 296 320 296 320 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF670-201 - 389 1.8e-59 195.6 95.9 10 12 2.7e-08 3.2e-05 24.1 2.5 4 26 326 348 323 348 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF670-201 - 389 1.8e-59 195.6 95.9 11 12 1.1e-12 1.3e-09 38.0 3.1 1 25 351 375 351 376 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF670-201 - 389 1.8e-59 195.6 95.9 12 12 9 1.1e+04 -2.8 0.2 1 7 379 385 379 385 0.77 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZNF670-201 - 389 7.2e-36 120.7 87.0 1 11 7.5 9e+03 -2.5 0.0 7 17 81 91 81 91 0.84 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF670-201 - 389 7.2e-36 120.7 87.0 2 11 0.00083 0.99 10.0 6.1 2 23 104 125 103 125 0.95 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF670-201 - 389 7.2e-36 120.7 87.0 3 11 0.84 1e+03 0.5 0.2 1 8 131 138 131 140 0.85 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF670-201 - 389 7.2e-36 120.7 87.0 4 11 1.3e-05 0.015 15.7 1.4 1 23 141 163 141 163 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF670-201 - 389 7.2e-36 120.7 87.0 5 11 7.5e-08 9e-05 22.7 4.5 1 23 197 219 197 219 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF670-201 - 389 7.2e-36 120.7 87.0 6 11 3.4e-08 4.1e-05 23.8 2.3 1 23 225 247 225 247 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF670-201 - 389 7.2e-36 120.7 87.0 7 11 9.7e-08 0.00012 22.4 0.4 1 23 253 275 253 275 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF670-201 - 389 7.2e-36 120.7 87.0 8 11 0.0034 4.1 8.0 1.9 1 23 281 303 281 303 0.95 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF670-201 - 389 7.2e-36 120.7 87.0 9 11 1.7e-08 2.1e-05 24.7 2.9 1 23 309 331 309 331 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF670-201 - 389 7.2e-36 120.7 87.0 10 11 6.6e-09 7.9e-06 26.0 0.8 3 23 339 359 337 359 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF670-201 - 389 7.2e-36 120.7 87.0 11 11 5.8e-06 0.0069 16.8 1.7 1 21 365 385 365 386 0.95 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZNF670-201 - 389 4.4e-32 108.0 84.4 1 10 2.4e-05 0.028 15.2 5.5 2 23 104 125 103 126 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF670-201 - 389 4.4e-32 108.0 84.4 2 10 1.5 1.8e+03 0.2 0.3 1 8 131 138 131 140 0.83 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF670-201 - 389 4.4e-32 108.0 84.4 3 10 3.6e-06 0.0043 17.8 1.1 1 23 141 163 141 164 0.97 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF670-201 - 389 4.4e-32 108.0 84.4 4 10 6.5e-06 0.0078 17.0 3.1 1 23 197 219 197 220 0.91 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF670-201 - 389 4.4e-32 108.0 84.4 5 10 2.1e-06 0.0025 18.5 2.1 1 23 225 247 225 248 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF670-201 - 389 4.4e-32 108.0 84.4 6 10 9.3e-06 0.011 16.5 0.4 1 23 253 275 253 276 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF670-201 - 389 4.4e-32 108.0 84.4 7 10 2.1e-05 0.025 15.4 2.0 1 23 281 303 281 304 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF670-201 - 389 4.4e-32 108.0 84.4 8 10 7.2e-06 0.0086 16.8 2.7 1 23 309 331 309 332 0.97 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF670-201 - 389 4.4e-32 108.0 84.4 9 10 1.7e-07 0.0002 21.9 0.8 2 23 338 359 337 360 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF670-201 - 389 4.4e-32 108.0 84.4 10 10 2.1e-06 0.0026 18.5 2.0 1 22 365 386 365 387 0.94 C2H2-type zinc finger KRAB PF01352.27 42 ZNF670-201 - 389 6.1e-25 86.6 0.1 1 1 8.1e-28 9.7e-25 86.0 0.1 1 42 3 44 3 44 0.99 KRAB box zf-C2H2_6 PF13912.6 27 ZNF670-201 - 389 3.4e-17 62.0 84.6 1 10 0.0016 1.9 8.6 0.5 3 11 104 112 104 113 0.96 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF670-201 - 389 3.4e-17 62.0 84.6 2 10 1.1 1.3e+03 -0.5 0.4 2 7 131 136 130 138 0.90 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF670-201 - 389 3.4e-17 62.0 84.6 3 10 0.00031 0.38 10.8 0.9 2 24 141 163 140 165 0.86 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF670-201 - 389 3.4e-17 62.0 84.6 4 10 0.00025 0.29 11.2 3.5 2 24 197 219 196 222 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF670-201 - 389 3.4e-17 62.0 84.6 5 10 0.00031 0.37 10.9 3.1 2 24 225 247 225 250 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF670-201 - 389 3.4e-17 62.0 84.6 6 10 5.1e-06 0.0061 16.5 0.8 2 24 253 275 253 278 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF670-201 - 389 3.4e-17 62.0 84.6 7 10 0.011 13 6.0 1.4 2 25 281 304 281 306 0.91 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF670-201 - 389 3.4e-17 62.0 84.6 8 10 2.7e-05 0.032 14.2 4.8 2 24 309 331 309 333 0.97 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF670-201 - 389 3.4e-17 62.0 84.6 9 10 4.5e-08 5.4e-05 23.1 1.8 2 24 337 359 337 362 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF670-201 - 389 3.4e-17 62.0 84.6 10 10 0.00053 0.63 10.1 3.2 2 24 365 387 365 388 0.90 C2H2-type zinc finger zf-C2H2_jaz PF12171.8 27 ZNF670-201 - 389 2.6e-10 40.3 62.6 1 10 0.0014 1.7 9.0 1.4 4 24 105 125 104 126 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF670-201 - 389 2.6e-10 40.3 62.6 2 10 1.3 1.5e+03 -0.4 0.2 2 7 131 136 130 139 0.87 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF670-201 - 389 2.6e-10 40.3 62.6 3 10 0.0056 6.7 7.1 0.3 4 22 143 161 140 163 0.90 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF670-201 - 389 2.6e-10 40.3 62.6 4 10 0.00011 0.13 12.6 4.1 2 24 197 219 196 219 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF670-201 - 389 2.6e-10 40.3 62.6 5 10 0.0052 6.2 7.2 0.9 2 24 225 247 224 247 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF670-201 - 389 2.6e-10 40.3 62.6 6 10 0.00089 1.1 9.7 0.1 2 24 253 275 252 275 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF670-201 - 389 2.6e-10 40.3 62.6 7 10 0.014 17 5.8 0.2 2 24 281 303 280 304 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF670-201 - 389 2.6e-10 40.3 62.6 8 10 0.046 55 4.2 2.7 2 24 309 331 308 331 0.89 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF670-201 - 389 2.6e-10 40.3 62.6 9 10 4.1e-06 0.0049 17.1 0.1 4 24 339 359 336 359 0.95 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF670-201 - 389 2.6e-10 40.3 62.6 10 10 0.027 32 5.0 0.5 2 22 365 385 364 385 0.93 Zinc-finger double-stranded RNA-binding # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF670-201.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF670-201.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF670-201.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF670-201.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF670-201.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:12:00 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZNF671-201 - 534 1.4e-61 202.3 63.4 1 12 0.0021 1.6 9.3 0.2 5 24 178 201 176 202 0.75 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF671-201 - 534 1.4e-61 202.3 63.4 2 12 0.57 4.2e+02 1.6 0.2 6 21 232 247 229 251 0.79 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF671-201 - 534 1.4e-61 202.3 63.4 3 12 0.0052 3.9 8.1 0.1 11 26 281 296 266 296 0.87 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF671-201 - 534 1.4e-61 202.3 63.4 4 12 3.2e-11 2.4e-08 34.0 0.3 2 25 300 323 299 324 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF671-201 - 534 1.4e-61 202.3 63.4 5 12 7.6e-10 5.7e-07 29.7 0.9 2 25 328 351 327 352 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF671-201 - 534 1.4e-61 202.3 63.4 6 12 5e-09 3.7e-06 27.1 0.2 2 26 356 380 355 380 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF671-201 - 534 1.4e-61 202.3 63.4 7 12 1.1e-08 8.2e-06 26.0 0.1 1 25 383 407 383 408 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF671-201 - 534 1.4e-61 202.3 63.4 8 12 1.2e-11 9.3e-09 35.3 0.2 2 25 412 435 411 436 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF671-201 - 534 1.4e-61 202.3 63.4 9 12 0.0018 1.3 9.6 1.6 1 25 439 461 439 462 0.87 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF671-201 - 534 1.4e-61 202.3 63.4 10 12 3.2e-11 2.4e-08 34.0 0.7 2 25 466 489 465 490 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF671-201 - 534 1.4e-61 202.3 63.4 11 12 1.1e-08 8.1e-06 26.0 0.1 1 24 493 516 493 518 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF671-201 - 534 1.4e-61 202.3 63.4 12 12 0.3 2.3e+02 2.5 0.1 2 13 522 533 521 534 0.89 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZNF671-201 - 534 2.5e-53 175.6 69.0 1 12 0.18 1.4e+02 3.2 0.0 1 16 164 179 164 181 0.82 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF671-201 - 534 2.5e-53 175.6 69.0 2 12 0.48 3.6e+02 1.9 0.2 1 20 192 211 192 213 0.77 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF671-201 - 534 2.5e-53 175.6 69.0 3 12 0.69 5.2e+02 1.4 0.0 6 21 243 261 239 262 0.86 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF671-201 - 534 2.5e-53 175.6 69.0 4 12 3.8e-09 2.8e-06 27.5 1.2 1 23 285 307 285 307 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF671-201 - 534 2.5e-53 175.6 69.0 5 12 4.6e-08 3.4e-05 24.0 1.3 1 23 313 335 313 335 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF671-201 - 534 2.5e-53 175.6 69.0 6 12 5.8e-07 0.00043 20.6 0.2 1 23 341 363 341 363 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF671-201 - 534 2.5e-53 175.6 69.0 7 12 3.9e-09 2.9e-06 27.4 0.8 1 23 369 391 369 391 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF671-201 - 534 2.5e-53 175.6 69.0 8 12 1.6e-08 1.2e-05 25.5 2.2 1 23 397 419 397 419 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF671-201 - 534 2.5e-53 175.6 69.0 9 12 3e-09 2.3e-06 27.8 0.6 1 23 425 447 425 447 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF671-201 - 534 2.5e-53 175.6 69.0 10 12 0.00013 0.1 13.1 1.6 1 23 451 473 451 473 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF671-201 - 534 2.5e-53 175.6 69.0 11 12 4.8e-08 3.6e-05 24.0 0.3 1 23 479 501 479 501 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF671-201 - 534 2.5e-53 175.6 69.0 12 12 1.7e-07 0.00012 22.3 0.3 1 23 507 529 507 529 0.99 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZNF671-201 - 534 4.3e-32 108.0 71.5 1 12 0.31 2.3e+02 3.0 0.2 1 18 164 181 164 183 0.76 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF671-201 - 534 4.3e-32 108.0 71.5 2 12 0.033 25 6.1 0.1 1 21 192 212 192 214 0.90 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF671-201 - 534 4.3e-32 108.0 71.5 3 12 2.6 1.9e+03 0.2 0.0 3 21 243 261 241 263 0.78 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF671-201 - 534 4.3e-32 108.0 71.5 4 12 1.9e-05 0.014 16.2 0.7 1 23 285 307 285 308 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF671-201 - 534 4.3e-32 108.0 71.5 5 12 0.00011 0.086 13.7 1.2 1 23 313 335 313 336 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF671-201 - 534 4.3e-32 108.0 71.5 6 12 0.00025 0.18 12.7 0.3 1 23 341 363 341 364 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF671-201 - 534 4.3e-32 108.0 71.5 7 12 7.3e-06 0.0055 17.4 0.8 1 23 369 391 369 392 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF671-201 - 534 4.3e-32 108.0 71.5 8 12 1.9e-05 0.014 16.2 2.0 1 23 397 419 397 420 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF671-201 - 534 4.3e-32 108.0 71.5 9 12 2.1e-06 0.0016 19.1 1.1 1 23 425 447 425 448 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF671-201 - 534 4.3e-32 108.0 71.5 10 12 1e-05 0.0076 17.0 2.0 1 23 451 473 451 474 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF671-201 - 534 4.3e-32 108.0 71.5 11 12 4.6e-06 0.0034 18.1 0.4 1 23 479 501 479 502 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF671-201 - 534 4.3e-32 108.0 71.5 12 12 0.00017 0.12 13.2 0.2 1 23 507 529 507 530 0.94 C2H2-type zinc finger KRAB PF01352.27 42 ZNF671-201 - 534 1.3e-21 75.9 1.2 1 1 3e-24 2.2e-21 75.2 1.2 2 42 49 89 48 89 0.98 KRAB box zf-C2H2_6 PF13912.6 27 ZNF671-201 - 534 3.4e-12 46.1 66.0 1 11 0.26 1.9e+02 2.2 0.2 2 8 164 170 163 170 0.90 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF671-201 - 534 3.4e-12 46.1 66.0 2 11 1.9 1.4e+03 -0.6 0.2 2 11 192 201 192 201 0.86 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF671-201 - 534 3.4e-12 46.1 66.0 3 11 0.0037 2.7 8.1 0.3 1 13 284 296 284 308 0.81 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF671-201 - 534 3.4e-12 46.1 66.0 4 11 0.00055 0.41 10.7 2.1 2 21 313 332 313 337 0.91 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF671-201 - 534 3.4e-12 46.1 66.0 5 11 3.6e-06 0.0027 17.6 0.3 2 24 341 363 341 366 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF671-201 - 534 3.4e-12 46.1 66.0 6 11 0.1 75 3.5 1.2 2 20 369 387 368 391 0.89 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF671-201 - 534 3.4e-12 46.1 66.0 7 11 0.00055 0.41 10.7 0.8 2 13 397 408 397 421 0.83 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF671-201 - 534 3.4e-12 46.1 66.0 8 11 0.00063 0.47 10.5 0.6 2 12 425 435 425 443 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF671-201 - 534 3.4e-12 46.1 66.0 9 11 0.0036 2.7 8.1 1.7 2 24 451 473 450 476 0.87 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF671-201 - 534 3.4e-12 46.1 66.0 10 11 0.0027 2 8.5 0.2 2 12 479 489 479 501 0.84 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF671-201 - 534 3.4e-12 46.1 66.0 11 11 0.0062 4.6 7.3 0.1 2 11 507 516 507 527 0.92 C2H2-type zinc finger zf_UBZ PF18439.1 32 ZNF671-201 - 534 1.4e-11 43.7 42.2 1 11 0.86 6.4e+02 0.1 0.1 2 9 163 170 162 176 0.84 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF671-201 - 534 1.4e-11 43.7 42.2 2 11 0.0015 1.2 8.8 0.0 3 21 192 211 190 211 0.94 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF671-201 - 534 1.4e-11 43.7 42.2 3 11 0.18 1.3e+02 2.3 0.1 3 13 285 295 283 304 0.78 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF671-201 - 534 1.4e-11 43.7 42.2 4 11 0.01 7.7 6.2 0.2 3 17 313 328 311 332 0.81 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF671-201 - 534 1.4e-11 43.7 42.2 5 11 0.01 7.7 6.2 0.1 3 14 341 352 339 360 0.75 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF671-201 - 534 1.4e-11 43.7 42.2 6 11 0.013 9.4 5.9 0.1 3 15 369 381 367 388 0.82 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF671-201 - 534 1.4e-11 43.7 42.2 7 11 0.0013 0.98 9.1 0.1 3 13 397 407 395 412 0.90 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF671-201 - 534 1.4e-11 43.7 42.2 8 11 0.0029 2.1 8.0 0.1 3 15 425 437 423 443 0.86 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF671-201 - 534 1.4e-11 43.7 42.2 9 11 0.00093 0.69 9.6 0.7 2 20 450 469 449 470 0.81 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF671-201 - 534 1.4e-11 43.7 42.2 10 11 0.02 15 5.3 0.2 3 12 479 488 477 493 0.87 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF671-201 - 534 1.4e-11 43.7 42.2 11 11 0.0096 7.2 6.3 0.2 3 12 507 516 505 521 0.87 Ubiquitin-Binding Zinc Finger Zn-ribbon_8 PF09723.10 40 ZNF671-201 - 534 2.4e-07 30.8 56.8 1 11 3.4 2.6e+03 -1.3 0.1 16 33 153 170 150 172 0.71 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF671-201 - 534 2.4e-07 30.8 56.8 2 11 0.1 78 3.5 0.2 6 15 192 201 191 212 0.89 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF671-201 - 534 2.4e-07 30.8 56.8 3 11 0.001 0.76 9.9 4.2 7 34 286 320 283 324 0.91 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF671-201 - 534 2.4e-07 30.8 56.8 4 11 0.0031 2.3 8.4 6.6 6 34 313 348 312 353 0.90 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF671-201 - 534 2.4e-07 30.8 56.8 5 11 0.022 16 5.7 0.7 6 19 341 354 340 363 0.82 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF671-201 - 534 2.4e-07 30.8 56.8 6 11 0.00033 0.25 11.5 3.8 6 38 369 408 368 410 0.91 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF671-201 - 534 2.4e-07 30.8 56.8 7 11 0.00023 0.17 12.0 5.6 6 35 397 433 396 437 0.84 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF671-201 - 534 2.4e-07 30.8 56.8 8 11 0.012 9.2 6.5 0.7 6 16 425 435 424 441 0.85 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF671-201 - 534 2.4e-07 30.8 56.8 9 11 2.2e-05 0.017 15.2 4.3 5 37 450 489 450 492 0.87 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF671-201 - 534 2.4e-07 30.8 56.8 10 11 0.00069 0.52 10.5 4.3 6 36 479 516 478 521 0.78 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF671-201 - 534 2.4e-07 30.8 56.8 11 11 0.014 10 6.3 0.5 6 17 507 518 506 526 0.85 Zinc ribbon domain DZR PF12773.7 49 ZNF671-201 - 534 6.6e-07 29.3 38.1 1 1 0.0073 5.4 7.1 0.1 12 37 163 200 156 207 0.87 Double zinc ribbon # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF671-201.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF671-201.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF671-201.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF671-201.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF671-201.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:12:01 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- KRAB PF01352.27 42 ZNF671-202 - 93 4.3e-22 77.5 2.0 1 1 3.6e-26 6.5e-22 76.9 2.0 2 42 49 89 48 89 0.97 KRAB box # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF671-202.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF671-202.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF671-202.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF671-202.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF671-202.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:12:01 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF671-203.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF671-203.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF671-203.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF671-203.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF671-203.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:12:01 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF671-204.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF671-204.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF671-204.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF671-204.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF671-204.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:12:02 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZNF671-205 - 457 1.4e-62 205.4 63.3 1 12 0.0018 1.3 9.6 0.2 5 24 101 124 99 125 0.75 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF671-205 - 457 1.4e-62 205.4 63.3 2 12 0.49 3.5e+02 1.9 0.2 6 21 155 170 152 174 0.79 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF671-205 - 457 1.4e-62 205.4 63.3 3 12 0.0045 3.3 8.3 0.1 11 26 204 219 189 219 0.87 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF671-205 - 457 1.4e-62 205.4 63.3 4 12 2.8e-11 2e-08 34.3 0.3 2 25 223 246 222 247 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF671-205 - 457 1.4e-62 205.4 63.3 5 12 6.6e-10 4.7e-07 29.9 0.9 2 25 251 274 250 275 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF671-205 - 457 1.4e-62 205.4 63.3 6 12 4.3e-09 3.1e-06 27.4 0.2 2 26 279 303 278 303 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF671-205 - 457 1.4e-62 205.4 63.3 7 12 9.5e-09 6.8e-06 26.3 0.1 1 25 306 330 306 331 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF671-205 - 457 1.4e-62 205.4 63.3 8 12 1.1e-11 7.7e-09 35.6 0.2 2 25 335 358 334 359 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF671-205 - 457 1.4e-62 205.4 63.3 9 12 0.0015 1.1 9.8 1.6 1 25 362 384 362 385 0.87 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF671-205 - 457 1.4e-62 205.4 63.3 10 12 2.7e-11 2e-08 34.3 0.7 2 25 389 412 388 413 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF671-205 - 457 1.4e-62 205.4 63.3 11 12 9.4e-09 6.7e-06 26.3 0.1 1 24 416 439 416 441 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF671-205 - 457 1.4e-62 205.4 63.3 12 12 0.26 1.9e+02 2.7 0.1 2 13 445 456 444 457 0.89 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZNF671-205 - 457 3e-54 178.6 69.0 1 12 0.16 1.2e+02 3.5 0.0 1 17 87 103 87 104 0.82 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF671-205 - 457 3e-54 178.6 69.0 2 12 0.42 3e+02 2.2 0.2 1 20 115 134 115 136 0.77 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF671-205 - 457 3e-54 178.6 69.0 3 12 0.6 4.3e+02 1.7 0.0 6 21 166 184 162 185 0.86 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF671-205 - 457 3e-54 178.6 69.0 4 12 3.3e-09 2.3e-06 27.7 1.1 1 23 208 230 208 230 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF671-205 - 457 3e-54 178.6 69.0 5 12 4e-08 2.8e-05 24.3 1.3 1 23 236 258 236 258 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF671-205 - 457 3e-54 178.6 69.0 6 12 5e-07 0.00036 20.8 0.2 1 23 264 286 264 286 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF671-205 - 457 3e-54 178.6 69.0 7 12 3.4e-09 2.4e-06 27.7 0.8 1 23 292 314 292 314 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF671-205 - 457 3e-54 178.6 69.0 8 12 1.4e-08 1e-05 25.7 2.2 1 23 320 342 320 342 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF671-205 - 457 3e-54 178.6 69.0 9 12 2.6e-09 1.9e-06 28.0 0.6 1 23 348 370 348 370 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF671-205 - 457 3e-54 178.6 69.0 10 12 0.00012 0.083 13.4 1.6 1 23 374 396 374 396 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF671-205 - 457 3e-54 178.6 69.0 11 12 4.1e-08 2.9e-05 24.2 0.3 1 23 402 424 402 424 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF671-205 - 457 3e-54 178.6 69.0 12 12 1.4e-07 0.0001 22.5 0.3 1 23 430 452 430 452 0.99 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZNF671-205 - 457 5.6e-33 110.8 71.6 1 12 0.27 2e+02 3.3 0.2 1 18 87 104 87 106 0.76 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF671-205 - 457 5.6e-33 110.8 71.6 2 12 0.028 20 6.3 0.1 1 21 115 135 115 137 0.90 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF671-205 - 457 5.6e-33 110.8 71.6 3 12 2 1.4e+03 0.6 0.0 3 21 166 184 164 187 0.78 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF671-205 - 457 5.6e-33 110.8 71.6 4 12 1.6e-05 0.012 16.4 0.7 1 23 208 230 208 231 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF671-205 - 457 5.6e-33 110.8 71.6 5 12 9.9e-05 0.071 14.0 1.2 1 23 236 258 236 259 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF671-205 - 457 5.6e-33 110.8 71.6 6 12 0.00021 0.15 13.0 0.3 1 23 264 286 264 287 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF671-205 - 457 5.6e-33 110.8 71.6 7 12 6.3e-06 0.0045 17.7 0.8 1 23 292 314 292 315 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF671-205 - 457 5.6e-33 110.8 71.6 8 12 1.6e-05 0.012 16.4 2.0 1 23 320 342 320 343 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF671-205 - 457 5.6e-33 110.8 71.6 9 12 1.8e-06 0.0013 19.4 1.1 1 23 348 370 348 371 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF671-205 - 457 5.6e-33 110.8 71.6 10 12 8.7e-06 0.0063 17.3 2.0 1 23 374 396 374 397 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF671-205 - 457 5.6e-33 110.8 71.6 11 12 4e-06 0.0029 18.3 0.4 1 23 402 424 402 425 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF671-205 - 457 5.6e-33 110.8 71.6 12 12 0.00014 0.1 13.5 0.2 1 23 430 452 430 453 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF671-205 - 457 5.1e-13 48.7 66.0 1 11 0.23 1.6e+02 2.4 0.2 2 8 87 93 86 93 0.90 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF671-205 - 457 5.1e-13 48.7 66.0 2 11 1.6 1.2e+03 -0.3 0.2 2 11 115 124 115 124 0.86 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF671-205 - 457 5.1e-13 48.7 66.0 3 11 0.0032 2.3 8.3 0.3 1 13 207 219 207 231 0.81 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF671-205 - 457 5.1e-13 48.7 66.0 4 11 0.00047 0.34 11.0 2.1 2 21 236 255 236 260 0.91 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF671-205 - 457 5.1e-13 48.7 66.0 5 11 3.2e-06 0.0023 17.9 0.3 2 24 264 286 264 289 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF671-205 - 457 5.1e-13 48.7 66.0 6 11 0.087 62 3.7 1.2 2 20 292 310 291 314 0.89 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF671-205 - 457 5.1e-13 48.7 66.0 7 11 0.00048 0.34 11.0 0.8 2 13 320 331 320 344 0.83 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF671-205 - 457 5.1e-13 48.7 66.0 8 11 0.00055 0.4 10.8 0.6 2 12 348 358 348 366 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF671-205 - 457 5.1e-13 48.7 66.0 9 11 0.0031 2.2 8.4 1.7 2 24 374 396 373 399 0.87 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF671-205 - 457 5.1e-13 48.7 66.0 10 11 0.0023 1.7 8.8 0.2 2 12 402 412 402 424 0.84 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF671-205 - 457 5.1e-13 48.7 66.0 11 11 0.0054 3.9 7.6 0.1 2 11 430 439 430 450 0.92 C2H2-type zinc finger zf_UBZ PF18439.1 32 ZNF671-205 - 457 2.2e-12 46.3 42.2 1 11 0.76 5.4e+02 0.3 0.1 2 9 86 93 85 99 0.84 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF671-205 - 457 2.2e-12 46.3 42.2 2 11 0.0013 0.96 9.1 0.0 3 21 115 134 113 134 0.94 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF671-205 - 457 2.2e-12 46.3 42.2 3 11 0.15 1.1e+02 2.5 0.1 3 13 208 218 206 227 0.78 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF671-205 - 457 2.2e-12 46.3 42.2 4 11 0.0089 6.4 6.5 0.2 3 17 236 251 234 255 0.81 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF671-205 - 457 2.2e-12 46.3 42.2 5 11 0.009 6.5 6.5 0.1 3 14 264 275 262 283 0.75 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF671-205 - 457 2.2e-12 46.3 42.2 6 11 0.011 7.8 6.2 0.1 3 15 292 304 290 311 0.82 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF671-205 - 457 2.2e-12 46.3 42.2 7 11 0.0012 0.82 9.3 0.1 3 13 320 330 318 335 0.90 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF671-205 - 457 2.2e-12 46.3 42.2 8 11 0.0025 1.8 8.2 0.1 3 15 348 360 346 366 0.86 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF671-205 - 457 2.2e-12 46.3 42.2 9 11 0.00081 0.58 9.8 0.7 2 20 373 392 372 393 0.81 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF671-205 - 457 2.2e-12 46.3 42.2 10 11 0.017 12 5.6 0.2 3 12 402 411 400 416 0.87 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF671-205 - 457 2.2e-12 46.3 42.2 11 11 0.0084 6 6.5 0.2 3 12 430 439 428 444 0.87 Ubiquitin-Binding Zinc Finger Zn-ribbon_8 PF09723.10 40 ZNF671-205 - 457 8.7e-08 32.2 57.4 1 10 2.8 2e+03 -1.0 0.0 16 33 76 93 73 96 0.72 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF671-205 - 457 8.7e-08 32.2 57.4 2 10 0.091 65 3.8 0.2 6 15 115 124 114 135 0.89 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF671-205 - 457 8.7e-08 32.2 57.4 3 10 0.0012 0.88 9.7 4.7 7 34 209 243 206 247 0.91 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF671-205 - 457 8.7e-08 32.2 57.4 4 10 0.0031 2.2 8.4 6.8 6 34 236 271 235 276 0.90 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF671-205 - 457 8.7e-08 32.2 57.4 5 10 0.019 14 5.9 0.7 6 19 264 277 263 286 0.82 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF671-205 - 457 8.7e-08 32.2 57.4 6 10 0.00031 0.22 11.7 3.9 6 38 292 331 291 333 0.91 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF671-205 - 457 8.7e-08 32.2 57.4 7 10 0.00016 0.11 12.6 5.3 6 35 320 356 319 360 0.84 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF671-205 - 457 8.7e-08 32.2 57.4 8 10 0.01 7.3 6.8 0.7 6 16 348 358 347 365 0.85 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF671-205 - 457 8.7e-08 32.2 57.4 9 10 2.6e-05 0.018 15.1 4.7 5 37 373 412 373 415 0.87 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF671-205 - 457 8.7e-08 32.2 57.4 10 10 0.013 9.2 6.5 0.5 6 17 430 441 429 448 0.85 Zinc ribbon domain DZR PF12773.7 49 ZNF671-205 - 457 1.9e-07 31.0 38.1 1 1 0.0062 4.4 7.4 0.1 12 37 86 123 79 130 0.87 Double zinc ribbon # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF671-205.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF671-205.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF671-205.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF671-205.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF671-205.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:12:02 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZNF671-206 - 436 7.3e-63 206.4 63.3 1 12 0.0018 1.2 9.7 0.2 5 24 80 103 78 104 0.75 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF671-206 - 436 7.3e-63 206.4 63.3 2 12 0.48 3.3e+02 2.0 0.2 6 21 134 149 131 153 0.79 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF671-206 - 436 7.3e-63 206.4 63.3 3 12 0.0045 3.1 8.4 0.1 11 26 183 198 168 198 0.87 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF671-206 - 436 7.3e-63 206.4 63.3 4 12 2.7e-11 1.9e-08 34.4 0.3 2 25 202 225 201 226 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF671-206 - 436 7.3e-63 206.4 63.3 5 12 6.5e-10 4.5e-07 30.0 0.9 2 25 230 253 229 254 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF671-206 - 436 7.3e-63 206.4 63.3 6 12 4.2e-09 2.9e-06 27.4 0.2 2 26 258 282 257 282 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF671-206 - 436 7.3e-63 206.4 63.3 7 12 9.3e-09 6.4e-06 26.4 0.1 1 25 285 309 285 310 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF671-206 - 436 7.3e-63 206.4 63.3 8 12 1.1e-11 7.3e-09 35.7 0.2 2 25 314 337 313 338 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF671-206 - 436 7.3e-63 206.4 63.3 9 12 0.0015 1 9.9 1.6 1 25 341 363 341 364 0.87 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF671-206 - 436 7.3e-63 206.4 63.3 10 12 2.7e-11 1.9e-08 34.4 0.7 2 25 368 391 367 392 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF671-206 - 436 7.3e-63 206.4 63.3 11 12 9.2e-09 6.4e-06 26.4 0.1 1 24 395 418 395 420 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF671-206 - 436 7.3e-63 206.4 63.3 12 12 0.26 1.8e+02 2.8 0.1 2 13 424 435 423 436 0.89 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZNF671-206 - 436 1.6e-54 179.4 69.0 1 12 0.16 1.1e+02 3.6 0.0 1 17 66 82 66 83 0.82 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF671-206 - 436 1.6e-54 179.4 69.0 2 12 0.41 2.8e+02 2.3 0.2 1 20 94 113 94 115 0.77 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF671-206 - 436 1.6e-54 179.4 69.0 3 12 0.59 4.1e+02 1.8 0.0 6 21 145 163 141 164 0.86 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF671-206 - 436 1.6e-54 179.4 69.0 4 12 3.2e-09 2.2e-06 27.8 1.1 1 23 187 209 187 209 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF671-206 - 436 1.6e-54 179.4 69.0 5 12 3.9e-08 2.7e-05 24.4 1.3 1 23 215 237 215 237 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF671-206 - 436 1.6e-54 179.4 69.0 6 12 4.9e-07 0.00034 20.9 0.2 1 23 243 265 243 265 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF671-206 - 436 1.6e-54 179.4 69.0 7 12 3.3e-09 2.3e-06 27.7 0.8 1 23 271 293 271 293 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF671-206 - 436 1.6e-54 179.4 69.0 8 12 1.4e-08 9.5e-06 25.8 2.2 1 23 299 321 299 321 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF671-206 - 436 1.6e-54 179.4 69.0 9 12 2.6e-09 1.8e-06 28.1 0.6 1 23 327 349 327 349 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF671-206 - 436 1.6e-54 179.4 69.0 10 12 0.00011 0.079 13.5 1.6 1 23 353 375 353 375 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF671-206 - 436 1.6e-54 179.4 69.0 11 12 4e-08 2.8e-05 24.3 0.3 1 23 381 403 381 403 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF671-206 - 436 1.6e-54 179.4 69.0 12 12 1.4e-07 9.7e-05 22.6 0.3 1 23 409 431 409 431 0.99 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZNF671-206 - 436 2.9e-33 111.6 71.6 1 12 0.27 1.8e+02 3.4 0.2 1 18 66 83 66 85 0.76 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF671-206 - 436 2.9e-33 111.6 71.6 2 12 0.028 19 6.4 0.1 1 21 94 114 94 116 0.90 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF671-206 - 436 2.9e-33 111.6 71.6 3 12 1.9 1.3e+03 0.7 0.0 3 21 145 163 143 166 0.78 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF671-206 - 436 2.9e-33 111.6 71.6 4 12 1.6e-05 0.011 16.5 0.7 1 23 187 209 187 210 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF671-206 - 436 2.9e-33 111.6 71.6 5 12 9.7e-05 0.067 14.1 1.2 1 23 215 237 215 238 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF671-206 - 436 2.9e-33 111.6 71.6 6 12 0.00021 0.14 13.0 0.3 1 23 243 265 243 266 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF671-206 - 436 2.9e-33 111.6 71.6 7 12 6.2e-06 0.0043 17.8 0.8 1 23 271 293 271 294 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF671-206 - 436 2.9e-33 111.6 71.6 8 12 1.6e-05 0.011 16.5 2.0 1 23 299 321 299 322 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF671-206 - 436 2.9e-33 111.6 71.6 9 12 1.8e-06 0.0012 19.5 1.1 1 23 327 349 327 350 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF671-206 - 436 2.9e-33 111.6 71.6 10 12 8.6e-06 0.0059 17.3 2.0 1 23 353 375 353 376 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF671-206 - 436 2.9e-33 111.6 71.6 11 12 3.9e-06 0.0027 18.4 0.4 1 23 381 403 381 404 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF671-206 - 436 2.9e-33 111.6 71.6 12 12 0.00014 0.097 13.6 0.2 1 23 409 431 409 432 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF671-206 - 436 2.9e-13 49.5 66.0 1 11 0.22 1.5e+02 2.5 0.2 2 8 66 72 65 72 0.90 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF671-206 - 436 2.9e-13 49.5 66.0 2 11 1.6 1.1e+03 -0.3 0.2 2 11 94 103 94 103 0.86 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF671-206 - 436 2.9e-13 49.5 66.0 3 11 0.0031 2.2 8.4 0.3 1 13 186 198 186 210 0.81 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF671-206 - 436 2.9e-13 49.5 66.0 4 11 0.00047 0.32 11.0 2.1 2 21 215 234 215 239 0.91 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF671-206 - 436 2.9e-13 49.5 66.0 5 11 3.1e-06 0.0021 18.0 0.3 2 24 243 265 243 268 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF671-206 - 436 2.9e-13 49.5 66.0 6 11 0.086 59 3.8 1.2 2 20 271 289 270 293 0.89 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF671-206 - 436 2.9e-13 49.5 66.0 7 11 0.00047 0.32 11.0 0.8 2 13 299 310 299 323 0.83 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF671-206 - 436 2.9e-13 49.5 66.0 8 11 0.00054 0.38 10.8 0.6 2 12 327 337 327 345 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF671-206 - 436 2.9e-13 49.5 66.0 9 11 0.003 2.1 8.4 1.7 2 24 353 375 352 378 0.87 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF671-206 - 436 2.9e-13 49.5 66.0 10 11 0.0023 1.6 8.8 0.2 2 12 381 391 381 403 0.84 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF671-206 - 436 2.9e-13 49.5 66.0 11 11 0.0053 3.7 7.7 0.1 2 11 409 418 409 429 0.92 C2H2-type zinc finger zf_UBZ PF18439.1 32 ZNF671-206 - 436 1.2e-12 47.1 42.2 1 11 0.75 5.1e+02 0.4 0.1 2 9 65 72 64 78 0.84 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF671-206 - 436 1.2e-12 47.1 42.2 2 11 0.0013 0.91 9.2 0.0 3 21 94 113 92 113 0.94 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF671-206 - 436 1.2e-12 47.1 42.2 3 11 0.15 1.1e+02 2.6 0.1 3 13 187 197 185 206 0.78 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF671-206 - 436 1.2e-12 47.1 42.2 4 11 0.0088 6.1 6.5 0.2 3 17 215 230 213 234 0.81 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF671-206 - 436 1.2e-12 47.1 42.2 5 11 0.0089 6.1 6.5 0.1 3 14 243 254 241 262 0.75 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF671-206 - 436 1.2e-12 47.1 42.2 6 11 0.011 7.4 6.3 0.1 3 15 271 283 269 290 0.82 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF671-206 - 436 1.2e-12 47.1 42.2 7 11 0.0011 0.78 9.4 0.1 3 13 299 309 297 314 0.90 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF671-206 - 436 1.2e-12 47.1 42.2 8 11 0.0025 1.7 8.3 0.1 3 15 327 339 325 345 0.86 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF671-206 - 436 1.2e-12 47.1 42.2 9 11 0.00079 0.55 9.9 0.7 2 20 352 371 351 372 0.81 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF671-206 - 436 1.2e-12 47.1 42.2 10 11 0.017 12 5.6 0.2 3 12 381 390 379 395 0.87 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF671-206 - 436 1.2e-12 47.1 42.2 11 11 0.0083 5.7 6.6 0.2 3 12 409 418 407 423 0.87 Ubiquitin-Binding Zinc Finger Zn-ribbon_8 PF09723.10 40 ZNF671-206 - 436 7.4e-08 32.4 57.8 1 11 2.7 1.9e+03 -0.9 0.0 16 33 55 72 52 75 0.72 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF671-206 - 436 7.4e-08 32.4 57.8 2 11 0.089 62 3.8 0.2 6 15 94 103 93 114 0.89 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF671-206 - 436 7.4e-08 32.4 57.8 3 11 0.0013 0.91 9.7 4.8 7 34 188 222 185 226 0.91 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF671-206 - 436 7.4e-08 32.4 57.8 4 11 0.0035 2.4 8.3 7.0 6 34 215 250 214 255 0.90 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF671-206 - 436 7.4e-08 32.4 57.8 5 11 0.019 13 6.0 0.7 6 19 243 256 242 265 0.82 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF671-206 - 436 7.4e-08 32.4 57.8 6 11 0.00039 0.27 11.4 4.3 6 38 271 310 270 313 0.91 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF671-206 - 436 7.4e-08 32.4 57.8 7 11 0.00016 0.11 12.6 5.4 6 35 299 335 298 339 0.84 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF671-206 - 436 7.4e-08 32.4 57.8 8 11 0.01 7.2 6.8 0.7 6 16 327 337 326 343 0.85 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF671-206 - 436 7.4e-08 32.4 57.8 9 11 2.4e-05 0.017 15.3 4.7 5 37 352 391 352 394 0.87 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF671-206 - 436 7.4e-08 32.4 57.8 10 11 0.00082 0.56 10.4 4.8 6 36 381 418 380 423 0.78 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF671-206 - 436 7.4e-08 32.4 57.8 11 11 0.012 8.5 6.6 0.5 6 17 409 420 408 428 0.85 Zinc ribbon domain DZR PF12773.7 49 ZNF671-206 - 436 1.1e-07 31.8 37.9 1 1 0.006 4.2 7.5 0.1 11 37 64 102 58 109 0.87 Double zinc ribbon # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF671-206.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF671-206.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF671-206.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF671-206.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF671-206.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:12:03 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZNF674-201 - 575 2.4e-89 290.1 93.4 1 15 2.7 2.5e+03 -0.8 0.0 16 22 116 122 96 122 0.89 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF674-201 - 575 2.4e-89 290.1 93.4 2 15 2.7e-07 0.00025 21.4 0.0 1 24 204 227 204 229 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF674-201 - 575 2.4e-89 290.1 93.4 3 15 1.7e-10 1.5e-07 31.5 1.0 1 25 232 256 232 257 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF674-201 - 575 2.4e-89 290.1 93.4 4 15 1.1e-11 9.5e-09 35.3 0.2 4 24 263 283 261 285 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF674-201 - 575 2.4e-89 290.1 93.4 5 15 1.2e-11 1.1e-08 35.1 1.6 2 26 289 313 288 313 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF674-201 - 575 2.4e-89 290.1 93.4 6 15 0.28 2.5e+02 2.3 0.6 1 16 316 331 316 337 0.76 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF674-201 - 575 2.4e-89 290.1 93.4 7 15 0.28 2.5e+02 2.3 0.4 7 18 344 354 343 357 0.84 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF674-201 - 575 2.4e-89 290.1 93.4 8 15 2.4e-08 2.1e-05 24.7 1.9 3 24 367 388 365 389 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF674-201 - 575 2.4e-89 290.1 93.4 9 15 9.2e-12 8.2e-09 35.5 0.6 1 25 393 417 393 417 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF674-201 - 575 2.4e-89 290.1 93.4 10 15 3.2e-09 2.9e-06 27.5 2.9 1 25 421 445 421 446 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF674-201 - 575 2.4e-89 290.1 93.4 11 15 1.5e-10 1.3e-07 31.7 0.3 5 25 453 473 450 474 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF674-201 - 575 2.4e-89 290.1 93.4 12 15 9.6e-11 8.6e-08 32.3 0.7 2 25 478 501 478 502 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF674-201 - 575 2.4e-89 290.1 93.4 13 15 1.1e-11 1e-08 35.2 0.6 2 25 506 529 505 529 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF674-201 - 575 2.4e-89 290.1 93.4 14 15 1.7e-09 1.6e-06 28.3 1.1 5 25 537 557 534 557 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF674-201 - 575 2.4e-89 290.1 93.4 15 15 0.018 16 6.1 0.1 2 13 562 573 561 575 0.87 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZNF674-201 - 575 2.1e-66 216.8 95.9 1 13 5.4 4.9e+03 -1.6 0.2 2 8 116 122 116 124 0.85 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF674-201 - 575 2.1e-66 216.8 95.9 2 13 6.2e-10 5.5e-07 29.7 0.3 1 23 218 240 218 240 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF674-201 - 575 2.1e-66 216.8 95.9 3 13 2e-07 0.00018 21.8 1.3 1 23 246 268 246 268 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF674-201 - 575 2.1e-66 216.8 95.9 4 13 1.4e-09 1.2e-06 28.6 0.9 1 23 274 296 274 296 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF674-201 - 575 2.1e-66 216.8 95.9 5 13 3.6e-08 3.3e-05 24.1 2.6 1 23 302 324 302 324 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF674-201 - 575 2.1e-66 216.8 95.9 6 13 9.4 8.4e+03 -2.4 0.6 17 23 367 373 367 373 0.89 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF674-201 - 575 2.1e-66 216.8 95.9 7 13 1.1e-08 1e-05 25.7 2.3 1 23 379 401 379 401 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF674-201 - 575 2.1e-66 216.8 95.9 8 13 3.4e-08 3e-05 24.2 3.9 1 23 407 429 407 429 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF674-201 - 575 2.1e-66 216.8 95.9 9 13 5.3e-07 0.00048 20.4 0.3 1 23 435 457 435 457 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF674-201 - 575 2.1e-66 216.8 95.9 10 13 2e-08 1.8e-05 24.9 0.3 1 23 463 485 463 485 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF674-201 - 575 2.1e-66 216.8 95.9 11 13 1.7e-09 1.5e-06 28.3 1.4 1 23 491 513 491 513 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF674-201 - 575 2.1e-66 216.8 95.9 12 13 2.1e-08 1.9e-05 24.9 1.7 1 23 519 541 519 541 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF674-201 - 575 2.1e-66 216.8 95.9 13 13 6e-09 5.4e-06 26.6 0.6 1 23 547 569 547 569 0.99 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZNF674-201 - 575 1.2e-40 134.7 90.8 1 13 4.7 4.2e+03 -0.9 0.3 2 8 116 122 116 124 0.83 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF674-201 - 575 1.2e-40 134.7 90.8 2 13 5.5e-06 0.0049 17.6 0.3 1 23 218 240 218 241 0.97 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF674-201 - 575 1.2e-40 134.7 90.8 3 13 2.9e-05 0.026 15.4 1.6 1 23 246 268 246 269 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF674-201 - 575 1.2e-40 134.7 90.8 4 13 1.6e-06 0.0015 19.2 0.7 1 23 274 296 274 297 0.97 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF674-201 - 575 1.2e-40 134.7 90.8 5 13 1.3e-06 0.0011 19.6 1.7 1 23 302 324 302 325 0.97 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF674-201 - 575 1.2e-40 134.7 90.8 6 13 4.9 4.4e+03 -0.9 0.2 17 23 367 373 352 374 0.76 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF674-201 - 575 1.2e-40 134.7 90.8 7 13 8.8e-06 0.0079 17.0 2.0 1 23 379 401 379 402 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF674-201 - 575 1.2e-40 134.7 90.8 8 13 9.3e-07 0.00083 20.0 3.1 1 23 407 429 407 430 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF674-201 - 575 1.2e-40 134.7 90.8 9 13 5.3e-05 0.047 14.5 0.3 1 23 435 457 435 458 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF674-201 - 575 1.2e-40 134.7 90.8 10 13 4e-06 0.0036 18.0 0.4 1 23 463 485 463 486 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF674-201 - 575 1.2e-40 134.7 90.8 11 13 9.5e-06 0.0085 16.9 0.9 1 23 491 513 491 514 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF674-201 - 575 1.2e-40 134.7 90.8 12 13 1e-05 0.0093 16.7 1.6 1 23 519 541 519 542 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF674-201 - 575 1.2e-40 134.7 90.8 13 13 2.8e-06 0.0025 18.5 0.5 1 23 547 569 547 570 0.97 C2H2-type zinc finger KRAB PF01352.27 42 ZNF674-201 - 575 1.1e-24 85.8 1.0 1 1 2.2e-27 2e-24 85.0 1.0 1 42 7 48 7 48 0.98 KRAB box zf-C2H2_6 PF13912.6 27 ZNF674-201 - 575 7.7e-12 44.9 79.1 1 12 3.4 3e+03 -1.6 1.4 3 9 116 122 116 122 0.85 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF674-201 - 575 7.7e-12 44.9 79.1 2 12 0.0003 0.27 11.3 0.3 2 11 218 227 217 241 0.88 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF674-201 - 575 7.7e-12 44.9 79.1 3 12 0.064 57 3.9 2.1 2 24 246 268 246 271 0.91 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF674-201 - 575 7.7e-12 44.9 79.1 4 12 0.00015 0.14 12.2 0.8 2 24 274 296 274 299 0.80 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF674-201 - 575 7.7e-12 44.9 79.1 5 12 0.00014 0.13 12.3 1.1 2 24 302 324 302 327 0.95 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF674-201 - 575 7.7e-12 44.9 79.1 6 12 0.00037 0.34 11.0 0.7 2 12 379 389 378 389 0.92 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF674-201 - 575 7.7e-12 44.9 79.1 7 12 0.00019 0.17 11.9 0.3 2 12 407 417 407 418 0.95 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF674-201 - 575 7.7e-12 44.9 79.1 8 12 0.2 1.8e+02 2.3 0.2 2 12 435 445 435 446 0.92 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF674-201 - 575 7.7e-12 44.9 79.1 9 12 0.0013 1.2 9.3 0.4 2 12 463 473 463 485 0.89 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF674-201 - 575 7.7e-12 44.9 79.1 10 12 0.0051 4.6 7.4 0.6 2 22 491 511 491 515 0.83 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF674-201 - 575 7.7e-12 44.9 79.1 11 12 0.00094 0.85 9.7 0.8 2 12 519 529 519 542 0.87 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF674-201 - 575 7.7e-12 44.9 79.1 12 12 0.048 43 4.3 0.9 2 24 547 569 547 571 0.88 C2H2-type zinc finger zf-C2H2_jaz PF12171.8 27 ZNF674-201 - 575 2.2e-10 40.5 59.2 1 12 1.2 1.1e+03 0.1 0.8 4 10 117 123 116 124 0.85 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF674-201 - 575 2.2e-10 40.5 59.2 2 12 0.0018 1.6 9.1 0.3 2 24 218 240 217 240 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF674-201 - 575 2.2e-10 40.5 59.2 3 12 0.00075 0.67 10.3 1.2 2 24 246 268 245 268 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF674-201 - 575 2.2e-10 40.5 59.2 4 12 0.00019 0.17 12.2 0.4 2 24 274 296 273 296 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF674-201 - 575 2.2e-10 40.5 59.2 5 12 0.00081 0.73 10.2 0.7 2 24 302 324 301 325 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF674-201 - 575 2.2e-10 40.5 59.2 6 12 0.64 5.8e+02 1.0 0.2 2 21 379 398 378 399 0.84 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF674-201 - 575 2.2e-10 40.5 59.2 7 12 0.0031 2.8 8.3 0.3 2 20 407 425 406 429 0.86 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF674-201 - 575 2.2e-10 40.5 59.2 8 12 1.6 1.5e+03 -0.3 0.0 2 22 435 455 434 455 0.85 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF674-201 - 575 2.2e-10 40.5 59.2 9 12 0.18 1.6e+02 2.7 0.1 2 21 463 482 462 483 0.81 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF674-201 - 575 2.2e-10 40.5 59.2 10 12 0.00084 0.75 10.2 0.2 2 22 491 511 490 511 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF674-201 - 575 2.2e-10 40.5 59.2 11 12 0.22 2e+02 2.4 0.2 2 20 519 537 518 541 0.78 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF674-201 - 575 2.2e-10 40.5 59.2 12 12 0.00083 0.75 10.2 0.1 2 24 547 569 546 569 0.95 Zinc-finger double-stranded RNA-binding Zn-ribbon_8 PF09723.10 40 ZNF674-201 - 575 2.1e-09 37.3 60.5 1 9 0.0011 0.94 9.6 5.2 6 34 218 253 217 259 0.88 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF674-201 - 575 2.1e-09 37.3 60.5 2 9 0.0048 4.3 7.5 2.9 6 32 274 307 272 313 0.84 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF674-201 - 575 2.1e-09 37.3 60.5 3 9 2.8 2.5e+03 -1.3 0.1 10 31 334 355 330 362 0.69 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF674-201 - 575 2.1e-09 37.3 60.5 4 9 1.4e-05 0.012 15.7 1.2 6 35 379 415 378 421 0.93 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF674-201 - 575 2.1e-09 37.3 60.5 5 9 1.3e-05 0.012 15.7 3.1 6 35 435 471 434 476 0.91 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF674-201 - 575 2.1e-09 37.3 60.5 6 9 8.7e-05 0.078 13.1 4.5 6 38 463 502 462 504 0.91 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF674-201 - 575 2.1e-09 37.3 60.5 7 9 5.5e-05 0.05 13.7 3.4 6 34 491 526 490 532 0.92 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF674-201 - 575 2.1e-09 37.3 60.5 8 9 0.00028 0.25 11.5 4.4 6 34 519 554 518 557 0.88 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF674-201 - 575 2.1e-09 37.3 60.5 9 9 0.0061 5.4 7.2 0.3 6 16 547 557 545 572 0.81 Zinc ribbon domain # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF674-201.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF674-201.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF674-201.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF674-201.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF674-201.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:12:03 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF674-202.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF674-202.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF674-202.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF674-202.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF674-202.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:12:03 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF674-203.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF674-203.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF674-203.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF674-203.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF674-203.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:12:04 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF674-204.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF674-204.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF674-204.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF674-204.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF674-204.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:12:04 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- KRAB PF01352.27 42 ZNF674-205 - 89 6.5e-26 89.7 1.0 1 1 4.7e-30 8.4e-26 89.4 1.0 1 42 7 48 7 48 0.98 KRAB box # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF674-205.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF674-205.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF674-205.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF674-205.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF674-205.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:12:04 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- KRAB PF01352.27 42 ZNF674-206 - 84 5.6e-26 89.9 1.0 1 1 4.1e-30 7.3e-26 89.6 1.0 1 42 7 48 7 48 0.98 KRAB box # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF674-206.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF674-206.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF674-206.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF674-206.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF674-206.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:12:05 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZNF674-207 - 581 2.8e-89 289.9 93.4 1 15 2.8 2.5e+03 -0.8 0.0 16 22 122 128 102 128 0.89 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF674-207 - 581 2.8e-89 289.9 93.4 2 15 2.8e-07 0.00025 21.3 0.0 1 24 210 233 210 235 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF674-207 - 581 2.8e-89 289.9 93.4 3 15 1.7e-10 1.5e-07 31.5 1.0 1 25 238 262 238 263 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF674-207 - 581 2.8e-89 289.9 93.4 4 15 1.1e-11 9.6e-09 35.3 0.2 4 24 269 289 267 291 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF674-207 - 581 2.8e-89 289.9 93.4 5 15 1.2e-11 1.1e-08 35.1 1.6 2 26 295 319 294 319 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF674-207 - 581 2.8e-89 289.9 93.4 6 15 0.29 2.6e+02 2.3 0.6 1 16 322 337 322 343 0.76 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF674-207 - 581 2.8e-89 289.9 93.4 7 15 0.28 2.6e+02 2.3 0.4 7 18 350 360 349 363 0.84 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF674-207 - 581 2.8e-89 289.9 93.4 8 15 2.4e-08 2.2e-05 24.7 1.9 3 24 373 394 371 395 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF674-207 - 581 2.8e-89 289.9 93.4 9 15 9.3e-12 8.3e-09 35.5 0.6 1 25 399 423 399 423 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF674-207 - 581 2.8e-89 289.9 93.4 10 15 3.2e-09 2.9e-06 27.4 2.9 1 25 427 451 427 452 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF674-207 - 581 2.8e-89 289.9 93.4 11 15 1.5e-10 1.3e-07 31.7 0.3 5 25 459 479 456 480 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF674-207 - 581 2.8e-89 289.9 93.4 12 15 9.8e-11 8.7e-08 32.3 0.7 2 25 484 507 484 508 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF674-207 - 581 2.8e-89 289.9 93.4 13 15 1.1e-11 1e-08 35.2 0.6 2 25 512 535 511 535 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF674-207 - 581 2.8e-89 289.9 93.4 14 15 1.8e-09 1.6e-06 28.3 1.1 5 25 543 563 540 563 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF674-207 - 581 2.8e-89 289.9 93.4 15 15 0.018 16 6.1 0.1 2 13 568 579 567 581 0.87 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZNF674-207 - 581 2.5e-66 216.6 95.9 1 13 5.5 4.9e+03 -1.7 0.2 2 8 122 128 122 130 0.85 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF674-207 - 581 2.5e-66 216.6 95.9 2 13 6.2e-10 5.6e-07 29.7 0.3 1 23 224 246 224 246 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF674-207 - 581 2.5e-66 216.6 95.9 3 13 2e-07 0.00018 21.8 1.3 1 23 252 274 252 274 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF674-207 - 581 2.5e-66 216.6 95.9 4 13 1.4e-09 1.2e-06 28.6 0.9 1 23 280 302 280 302 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF674-207 - 581 2.5e-66 216.6 95.9 5 13 3.7e-08 3.3e-05 24.1 2.6 1 23 308 330 308 330 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF674-207 - 581 2.5e-66 216.6 95.9 6 13 9.5 8.5e+03 -2.4 0.6 17 23 373 379 373 379 0.89 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF674-207 - 581 2.5e-66 216.6 95.9 7 13 1.1e-08 1e-05 25.7 2.3 1 23 385 407 385 407 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF674-207 - 581 2.5e-66 216.6 95.9 8 13 3.4e-08 3e-05 24.2 3.9 1 23 413 435 413 435 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF674-207 - 581 2.5e-66 216.6 95.9 9 13 5.4e-07 0.00049 20.4 0.3 1 23 441 463 441 463 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF674-207 - 581 2.5e-66 216.6 95.9 10 13 2.1e-08 1.8e-05 24.9 0.3 1 23 469 491 469 491 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF674-207 - 581 2.5e-66 216.6 95.9 11 13 1.7e-09 1.5e-06 28.3 1.4 1 23 497 519 497 519 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF674-207 - 581 2.5e-66 216.6 95.9 12 13 2.1e-08 1.9e-05 24.9 1.7 1 23 525 547 525 547 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF674-207 - 581 2.5e-66 216.6 95.9 13 13 6.1e-09 5.4e-06 26.6 0.6 1 23 553 575 553 575 0.99 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZNF674-207 - 581 1.4e-40 134.5 90.8 1 13 4.8 4.3e+03 -0.9 0.3 2 8 122 128 122 130 0.83 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF674-207 - 581 1.4e-40 134.5 90.8 2 13 5.6e-06 0.005 17.6 0.3 1 23 224 246 224 247 0.97 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF674-207 - 581 1.4e-40 134.5 90.8 3 13 2.9e-05 0.026 15.3 1.6 1 23 252 274 252 275 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF674-207 - 581 1.4e-40 134.5 90.8 4 13 1.7e-06 0.0015 19.2 0.7 1 23 280 302 280 303 0.97 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF674-207 - 581 1.4e-40 134.5 90.8 5 13 1.3e-06 0.0012 19.5 1.7 1 23 308 330 308 331 0.97 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF674-207 - 581 1.4e-40 134.5 90.8 6 13 5 4.5e+03 -1.0 0.2 17 23 373 379 358 380 0.76 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF674-207 - 581 1.4e-40 134.5 90.8 7 13 8.9e-06 0.008 16.9 2.0 1 23 385 407 385 408 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF674-207 - 581 1.4e-40 134.5 90.8 8 13 9.4e-07 0.00084 20.0 3.1 1 23 413 435 413 436 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF674-207 - 581 1.4e-40 134.5 90.8 9 13 5.3e-05 0.048 14.5 0.3 1 23 441 463 441 464 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF674-207 - 581 1.4e-40 134.5 90.8 10 13 4.1e-06 0.0036 18.0 0.4 1 23 469 491 469 492 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF674-207 - 581 1.4e-40 134.5 90.8 11 13 9.6e-06 0.0086 16.8 0.9 1 23 497 519 497 520 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF674-207 - 581 1.4e-40 134.5 90.8 12 13 1e-05 0.0094 16.7 1.6 1 23 525 547 525 548 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF674-207 - 581 1.4e-40 134.5 90.8 13 13 2.8e-06 0.0025 18.5 0.5 1 23 553 575 553 576 0.97 C2H2-type zinc finger KRAB PF01352.27 42 ZNF674-207 - 581 1.1e-24 85.8 1.0 1 1 2.2e-27 2e-24 85.0 1.0 1 42 7 48 7 48 0.98 KRAB box zf-C2H2_6 PF13912.6 27 ZNF674-207 - 581 8.9e-12 44.7 79.1 1 12 3.4 3.1e+03 -1.6 1.4 3 9 122 128 122 128 0.85 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF674-207 - 581 8.9e-12 44.7 79.1 2 12 0.00031 0.28 11.3 0.3 2 11 224 233 223 247 0.88 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF674-207 - 581 8.9e-12 44.7 79.1 3 12 0.064 58 3.9 2.1 2 24 252 274 252 277 0.91 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF674-207 - 581 8.9e-12 44.7 79.1 4 12 0.00016 0.14 12.2 0.8 2 24 280 302 280 305 0.80 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF674-207 - 581 8.9e-12 44.7 79.1 5 12 0.00015 0.13 12.3 1.1 2 24 308 330 308 333 0.95 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF674-207 - 581 8.9e-12 44.7 79.1 6 12 0.00038 0.34 11.0 0.7 2 12 385 395 384 395 0.92 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF674-207 - 581 8.9e-12 44.7 79.1 7 12 0.0002 0.18 11.9 0.3 2 12 413 423 413 424 0.95 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF674-207 - 581 8.9e-12 44.7 79.1 8 12 0.2 1.8e+02 2.3 0.2 2 12 441 451 441 452 0.92 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF674-207 - 581 8.9e-12 44.7 79.1 9 12 0.0013 1.2 9.2 0.4 2 12 469 479 469 491 0.89 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF674-207 - 581 8.9e-12 44.7 79.1 10 12 0.0052 4.6 7.3 0.6 2 22 497 517 497 521 0.83 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF674-207 - 581 8.9e-12 44.7 79.1 11 12 0.00096 0.86 9.7 0.8 2 12 525 535 525 548 0.87 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF674-207 - 581 8.9e-12 44.7 79.1 12 12 0.049 44 4.2 0.9 2 24 553 575 553 577 0.88 C2H2-type zinc finger zf-C2H2_jaz PF12171.8 27 ZNF674-207 - 581 2.6e-10 40.3 59.2 1 12 1.2 1.1e+03 0.1 0.8 4 10 123 129 122 130 0.85 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF674-207 - 581 2.6e-10 40.3 59.2 2 12 0.0018 1.6 9.1 0.3 2 24 224 246 223 246 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF674-207 - 581 2.6e-10 40.3 59.2 3 12 0.00076 0.68 10.3 1.2 2 24 252 274 251 274 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF674-207 - 581 2.6e-10 40.3 59.2 4 12 0.00019 0.17 12.2 0.4 2 24 280 302 279 302 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF674-207 - 581 2.6e-10 40.3 59.2 5 12 0.00082 0.74 10.2 0.7 2 24 308 330 307 331 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF674-207 - 581 2.6e-10 40.3 59.2 6 12 0.65 5.8e+02 0.9 0.2 2 21 385 404 384 405 0.84 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF674-207 - 581 2.6e-10 40.3 59.2 7 12 0.0032 2.8 8.3 0.3 2 20 413 431 412 435 0.86 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF674-207 - 581 2.6e-10 40.3 59.2 8 12 1.6 1.5e+03 -0.3 0.0 2 22 441 461 440 461 0.85 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF674-207 - 581 2.6e-10 40.3 59.2 9 12 0.18 1.6e+02 2.7 0.1 2 21 469 488 468 489 0.81 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF674-207 - 581 2.6e-10 40.3 59.2 10 12 0.00085 0.76 10.1 0.2 2 22 497 517 496 517 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF674-207 - 581 2.6e-10 40.3 59.2 11 12 0.23 2e+02 2.4 0.2 2 20 525 543 524 547 0.78 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF674-207 - 581 2.6e-10 40.3 59.2 12 12 0.00085 0.76 10.1 0.1 2 24 553 575 552 575 0.95 Zinc-finger double-stranded RNA-binding Zn-ribbon_8 PF09723.10 40 ZNF674-207 - 581 2.2e-09 37.3 60.4 1 9 0.0011 0.98 9.6 5.2 6 34 224 259 223 265 0.88 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF674-207 - 581 2.2e-09 37.3 60.4 2 9 0.0049 4.4 7.5 2.9 6 32 280 313 278 319 0.84 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF674-207 - 581 2.2e-09 37.3 60.4 3 9 2.8 2.6e+03 -1.3 0.1 10 31 340 361 336 368 0.69 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF674-207 - 581 2.2e-09 37.3 60.4 4 9 1.4e-05 0.012 15.7 1.2 6 35 385 421 384 427 0.93 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF674-207 - 581 2.2e-09 37.3 60.4 5 9 1.3e-05 0.012 15.7 3.1 6 35 441 477 440 482 0.91 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF674-207 - 581 2.2e-09 37.3 60.4 6 9 8.5e-05 0.076 13.1 4.5 6 38 469 508 468 510 0.91 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF674-207 - 581 2.2e-09 37.3 60.4 7 9 5e-05 0.045 13.9 3.2 6 34 497 532 496 538 0.92 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF674-207 - 581 2.2e-09 37.3 60.4 8 9 0.0002 0.18 11.9 4.1 6 34 525 560 524 566 0.88 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF674-207 - 581 2.2e-09 37.3 60.4 9 9 0.0062 5.6 7.2 0.3 6 16 553 563 552 578 0.80 Zinc ribbon domain # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF674-207.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF674-207.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF674-207.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF674-207.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF674-207.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:12:05 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZNF675-201 - 568 2e-89 290.4 132.5 1 16 1.3 1.2e+03 0.2 0.1 12 25 141 154 138 155 0.75 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF675-201 - 568 2e-89 290.4 132.5 2 16 1.2e-05 0.012 16.1 4.5 4 24 161 181 158 181 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF675-201 - 568 2e-89 290.4 132.5 3 16 0.017 16 6.1 2.7 1 23 186 208 186 211 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF675-201 - 568 2e-89 290.4 132.5 4 16 0.0011 1 9.9 3.3 2 25 215 238 214 239 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF675-201 - 568 2e-89 290.4 132.5 5 16 2.4e-05 0.023 15.1 1.2 12 25 253 266 252 267 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF675-201 - 568 2e-89 290.4 132.5 6 16 6e-11 5.7e-08 32.8 1.4 1 25 270 294 270 295 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF675-201 - 568 2e-89 290.4 132.5 7 16 4.9e-09 4.6e-06 26.8 0.2 1 25 298 322 298 323 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF675-201 - 568 2e-89 290.4 132.5 8 16 1.8e-11 1.7e-08 34.5 1.5 2 25 327 350 326 351 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF675-201 - 568 2e-89 290.4 132.5 9 16 1.6e-09 1.5e-06 28.3 0.8 2 25 355 378 354 379 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF675-201 - 568 2e-89 290.4 132.5 10 16 2.1e-10 2e-07 31.1 4.7 1 26 382 407 382 407 0.97 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF675-201 - 568 2e-89 290.4 132.5 11 16 5.2e-12 4.9e-09 36.2 1.0 1 25 410 434 410 435 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF675-201 - 568 2e-89 290.4 132.5 12 16 1.8e-10 1.7e-07 31.3 2.1 2 24 439 461 438 463 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF675-201 - 568 2e-89 290.4 132.5 13 16 6.5e-09 6.2e-06 26.4 2.6 2 26 467 491 466 491 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF675-201 - 568 2e-89 290.4 132.5 14 16 8.5e-12 8e-09 35.5 1.2 1 25 494 518 494 519 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF675-201 - 568 2e-89 290.4 132.5 15 16 3.8e-10 3.6e-07 30.3 1.0 2 25 523 546 522 547 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF675-201 - 568 2e-89 290.4 132.5 16 16 0.001 0.95 10.0 0.4 1 13 550 562 550 564 0.94 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZNF675-201 - 568 4.6e-75 244.1 114.3 1 15 9 8.5e+03 -2.4 1.1 6 23 146 166 144 166 0.74 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF675-201 - 568 4.6e-75 244.1 114.3 2 15 1e-06 0.00098 19.5 3.9 1 21 172 192 172 193 0.95 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF675-201 - 568 4.6e-75 244.1 114.3 3 15 8.7e-05 0.082 13.4 1.0 2 21 201 220 200 221 0.93 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF675-201 - 568 4.6e-75 244.1 114.3 4 15 4.4e-05 0.041 14.3 0.8 1 17 228 244 228 245 0.95 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF675-201 - 568 4.6e-75 244.1 114.3 5 15 2.1e-08 1.9e-05 24.8 1.2 1 23 256 278 256 278 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF675-201 - 568 4.6e-75 244.1 114.3 6 15 2.8e-08 2.7e-05 24.4 0.9 1 23 284 306 284 306 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF675-201 - 568 4.6e-75 244.1 114.3 7 15 2e-08 1.9e-05 24.8 0.4 1 23 312 334 312 334 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF675-201 - 568 4.6e-75 244.1 114.3 8 15 2.9e-08 2.7e-05 24.4 0.6 1 23 340 362 340 362 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF675-201 - 568 4.6e-75 244.1 114.3 9 15 1.8e-09 1.7e-06 28.1 0.6 1 23 368 390 368 390 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF675-201 - 568 4.6e-75 244.1 114.3 10 15 1.1e-08 9.9e-06 25.7 2.6 1 23 396 418 396 418 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF675-201 - 568 4.6e-75 244.1 114.3 11 15 3e-08 2.8e-05 24.3 1.0 1 23 424 446 424 446 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF675-201 - 568 4.6e-75 244.1 114.3 12 15 9.7e-08 9.2e-05 22.7 0.4 1 23 452 474 452 474 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF675-201 - 568 4.6e-75 244.1 114.3 13 15 9.6e-09 9.1e-06 25.9 2.6 1 23 480 502 480 502 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF675-201 - 568 4.6e-75 244.1 114.3 14 15 3.8e-08 3.6e-05 24.0 0.4 1 23 508 530 508 530 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF675-201 - 568 4.6e-75 244.1 114.3 15 15 5.7e-08 5.4e-05 23.4 1.1 1 23 536 558 536 558 0.98 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZNF675-201 - 568 1.3e-35 119.0 108.1 1 14 0.00015 0.14 13.0 3.7 1 21 172 192 172 194 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF675-201 - 568 1.3e-35 119.0 108.1 2 14 0.025 24 6.1 1.1 2 21 201 220 200 222 0.91 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF675-201 - 568 1.3e-35 119.0 108.1 3 14 0.013 12 7.0 0.5 1 16 228 243 228 248 0.85 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF675-201 - 568 1.3e-35 119.0 108.1 4 14 3.8e-05 0.035 14.9 1.0 1 23 256 278 256 279 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF675-201 - 568 1.3e-35 119.0 108.1 5 14 2.8e-05 0.026 15.3 0.7 1 23 284 306 284 307 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF675-201 - 568 1.3e-35 119.0 108.1 6 14 1.9e-05 0.018 15.8 0.3 1 23 312 334 312 335 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF675-201 - 568 1.3e-35 119.0 108.1 7 14 4.4e-05 0.042 14.7 0.5 1 23 340 362 340 363 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF675-201 - 568 1.3e-35 119.0 108.1 8 14 1.5e-05 0.014 16.2 0.5 1 23 368 390 368 391 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF675-201 - 568 1.3e-35 119.0 108.1 9 14 5.9e-05 0.055 14.3 2.1 1 23 396 418 396 419 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF675-201 - 568 1.3e-35 119.0 108.1 10 14 2.1e-05 0.02 15.7 1.0 1 23 424 446 424 447 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF675-201 - 568 1.3e-35 119.0 108.1 11 14 6.8e-05 0.064 14.1 0.5 1 23 452 474 452 475 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF675-201 - 568 1.3e-35 119.0 108.1 12 14 6.8e-05 0.064 14.1 2.1 1 23 480 502 480 503 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF675-201 - 568 1.3e-35 119.0 108.1 13 14 2.5e-05 0.024 15.4 0.5 1 23 508 530 508 531 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF675-201 - 568 1.3e-35 119.0 108.1 14 14 8.9e-05 0.084 13.8 0.8 1 23 536 558 536 559 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF675-201 - 568 5.1e-23 80.6 124.4 1 13 0.0013 1.2 9.2 3.1 2 24 172 194 172 197 0.85 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF675-201 - 568 5.1e-23 80.6 124.4 2 13 0.00024 0.23 11.5 0.8 2 18 228 244 227 248 0.87 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF675-201 - 568 5.1e-23 80.6 124.4 3 13 0.0008 0.76 9.9 1.5 2 24 256 278 256 281 0.90 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF675-201 - 568 5.1e-23 80.6 124.4 4 13 7.6e-07 0.00072 19.5 1.4 2 24 284 306 284 309 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF675-201 - 568 5.1e-23 80.6 124.4 5 13 0.00052 0.49 10.5 0.4 2 24 312 334 312 337 0.92 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF675-201 - 568 5.1e-23 80.6 124.4 6 13 0.00038 0.36 10.9 1.2 2 21 340 359 340 363 0.91 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF675-201 - 568 5.1e-23 80.6 124.4 7 13 3.9e-06 0.0037 17.2 0.8 2 24 368 390 368 393 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF675-201 - 568 5.1e-23 80.6 124.4 8 13 4.8e-06 0.0046 16.9 3.2 2 24 396 418 396 421 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF675-201 - 568 5.1e-23 80.6 124.4 9 13 0.00012 0.11 12.5 2.9 2 24 424 446 424 449 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF675-201 - 568 5.1e-23 80.6 124.4 10 13 0.003 2.8 8.0 1.4 2 24 452 474 452 477 0.89 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF675-201 - 568 5.1e-23 80.6 124.4 11 13 9.9e-05 0.094 12.7 3.1 2 24 480 502 480 505 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF675-201 - 568 5.1e-23 80.6 124.4 12 13 0.00012 0.11 12.5 0.8 2 24 508 530 508 533 0.92 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF675-201 - 568 5.1e-23 80.6 124.4 13 13 0.00061 0.57 10.2 1.0 2 24 536 558 536 561 0.94 C2H2-type zinc finger KRAB PF01352.27 42 ZNF675-201 - 568 8.1e-23 79.8 0.2 1 1 1.5e-25 1.4e-22 79.0 0.2 2 42 4 44 3 44 0.98 KRAB box zf_UBZ PF18439.1 32 ZNF675-201 - 568 8.4e-22 76.5 76.4 1 15 0.2 1.9e+02 1.8 0.1 7 22 145 160 145 162 0.92 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF675-201 - 568 8.4e-22 76.5 76.4 2 15 0.084 80 3.0 0.6 3 12 172 181 170 190 0.87 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF675-201 - 568 8.4e-22 76.5 76.4 3 15 0.16 1.5e+02 2.0 1.8 4 20 201 218 199 219 0.81 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF675-201 - 568 8.4e-22 76.5 76.4 4 15 0.027 26 4.5 0.2 3 14 228 239 226 245 0.81 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF675-201 - 568 8.4e-22 76.5 76.4 5 15 0.0017 1.6 8.4 0.4 3 20 256 274 254 275 0.82 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF675-201 - 568 8.4e-22 76.5 76.4 6 15 0.0022 2.1 8.0 0.1 3 20 284 302 282 303 0.82 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF675-201 - 568 8.4e-22 76.5 76.4 7 15 0.00085 0.8 9.4 0.2 3 20 312 330 310 331 0.85 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF675-201 - 568 8.4e-22 76.5 76.4 8 15 0.00012 0.11 12.1 0.2 3 20 340 358 338 359 0.93 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF675-201 - 568 8.4e-22 76.5 76.4 9 15 0.00025 0.24 11.0 0.2 3 20 368 386 366 387 0.92 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF675-201 - 568 8.4e-22 76.5 76.4 10 15 0.001 0.97 9.1 0.2 3 20 396 414 394 415 0.89 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF675-201 - 568 8.4e-22 76.5 76.4 11 15 0.00012 0.11 12.1 0.2 3 20 424 442 422 443 0.93 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF675-201 - 568 8.4e-22 76.5 76.4 12 15 7.4e-05 0.07 12.7 0.3 3 20 452 470 450 471 0.91 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF675-201 - 568 8.4e-22 76.5 76.4 13 15 0.00066 0.62 9.7 0.4 3 20 480 498 479 499 0.90 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF675-201 - 568 8.4e-22 76.5 76.4 14 15 3.9e-05 0.037 13.6 0.3 3 20 508 526 506 527 0.93 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF675-201 - 568 8.4e-22 76.5 76.4 15 15 0.0026 2.5 7.8 0.1 3 20 536 554 534 555 0.79 Ubiquitin-Binding Zinc Finger zf-C2H2_jaz PF12171.8 27 ZNF675-201 - 568 4.8e-21 74.5 78.3 1 15 7.9 7.4e+03 -2.6 0.2 7 12 146 151 145 151 0.85 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF675-201 - 568 4.8e-21 74.5 78.3 2 15 0.1 99 3.4 0.5 2 11 172 181 171 193 0.78 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF675-201 - 568 4.8e-21 74.5 78.3 3 15 0.22 2.1e+02 2.4 1.1 4 22 202 220 201 220 0.89 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF675-201 - 568 4.8e-21 74.5 78.3 4 15 0.0046 4.3 7.7 0.5 2 12 228 238 227 238 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF675-201 - 568 4.8e-21 74.5 78.3 5 15 0.0041 3.9 7.9 0.3 2 21 256 275 255 276 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF675-201 - 568 4.8e-21 74.5 78.3 6 15 0.035 33 4.9 0.6 2 21 284 303 283 304 0.80 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF675-201 - 568 4.8e-21 74.5 78.3 7 15 0.0025 2.4 8.6 0.0 2 22 312 332 311 332 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF675-201 - 568 4.8e-21 74.5 78.3 8 15 0.00024 0.23 11.8 0.2 2 22 340 360 339 360 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF675-201 - 568 4.8e-21 74.5 78.3 9 15 0.0001 0.098 13.0 0.1 2 22 368 388 367 388 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF675-201 - 568 4.8e-21 74.5 78.3 10 15 3e-05 0.028 14.7 0.3 2 22 396 416 395 416 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF675-201 - 568 4.8e-21 74.5 78.3 11 15 0.00023 0.22 11.9 0.2 2 22 424 444 423 444 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF675-201 - 568 4.8e-21 74.5 78.3 12 15 0.0023 2.2 8.7 0.3 2 22 452 472 451 472 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF675-201 - 568 4.8e-21 74.5 78.3 13 15 4.7e-05 0.044 14.1 0.2 2 22 480 500 479 500 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF675-201 - 568 4.8e-21 74.5 78.3 14 15 0.001 0.97 9.8 0.1 2 21 508 527 507 528 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF675-201 - 568 4.8e-21 74.5 78.3 15 15 0.0051 4.9 7.6 1.0 2 22 536 556 535 556 0.93 Zinc-finger double-stranded RNA-binding XPA_N PF01286.18 32 ZNF675-201 - 568 2.4e-20 72.2 70.2 1 14 0.036 34 4.6 0.7 3 12 173 182 171 189 0.90 XPA protein N-terminal XPA_N PF01286.18 32 ZNF675-201 - 568 2.4e-20 72.2 70.2 2 14 0.089 84 3.3 1.7 3 14 201 212 200 218 0.83 XPA protein N-terminal XPA_N PF01286.18 32 ZNF675-201 - 568 2.4e-20 72.2 70.2 3 14 0.042 40 4.4 0.6 3 12 229 238 228 240 0.89 XPA protein N-terminal XPA_N PF01286.18 32 ZNF675-201 - 568 2.4e-20 72.2 70.2 4 14 0.0003 0.29 11.2 0.2 3 17 257 271 255 275 0.83 XPA protein N-terminal XPA_N PF01286.18 32 ZNF675-201 - 568 2.4e-20 72.2 70.2 5 14 0.0038 3.6 7.7 0.2 3 12 285 294 283 300 0.90 XPA protein N-terminal XPA_N PF01286.18 32 ZNF675-201 - 568 2.4e-20 72.2 70.2 6 14 0.00058 0.55 10.3 0.1 3 14 313 324 311 330 0.86 XPA protein N-terminal XPA_N PF01286.18 32 ZNF675-201 - 568 2.4e-20 72.2 70.2 7 14 0.00099 0.93 9.6 0.2 3 14 341 352 339 358 0.85 XPA protein N-terminal XPA_N PF01286.18 32 ZNF675-201 - 568 2.4e-20 72.2 70.2 8 14 0.0012 1.1 9.3 0.2 3 14 369 380 367 385 0.90 XPA protein N-terminal XPA_N PF01286.18 32 ZNF675-201 - 568 2.4e-20 72.2 70.2 9 14 0.001 0.98 9.5 0.1 3 14 397 408 395 414 0.86 XPA protein N-terminal XPA_N PF01286.18 32 ZNF675-201 - 568 2.4e-20 72.2 70.2 10 14 0.00099 0.93 9.6 0.2 3 14 425 436 423 442 0.85 XPA protein N-terminal XPA_N PF01286.18 32 ZNF675-201 - 568 2.4e-20 72.2 70.2 11 14 0.00059 0.56 10.3 0.2 3 14 453 464 451 470 0.85 XPA protein N-terminal XPA_N PF01286.18 32 ZNF675-201 - 568 2.4e-20 72.2 70.2 12 14 0.00064 0.6 10.2 0.2 3 14 481 492 479 498 0.88 XPA protein N-terminal XPA_N PF01286.18 32 ZNF675-201 - 568 2.4e-20 72.2 70.2 13 14 0.00089 0.84 9.7 0.3 3 14 509 520 507 526 0.85 XPA protein N-terminal XPA_N PF01286.18 32 ZNF675-201 - 568 2.4e-20 72.2 70.2 14 14 0.012 11 6.2 0.1 3 14 537 548 535 553 0.90 XPA protein N-terminal Zn-ribbon_8 PF09723.10 40 ZNF675-201 - 568 4e-14 52.5 91.2 1 13 1.1 1e+03 -0.1 8.9 6 36 172 209 171 212 0.68 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF675-201 - 568 4e-14 52.5 91.2 2 13 2.1 2e+03 -1.0 2.4 7 25 201 219 194 226 0.68 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF675-201 - 568 4e-14 52.5 91.2 3 13 0.0018 1.7 8.8 0.5 6 20 228 242 227 250 0.85 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF675-201 - 568 4e-14 52.5 91.2 4 13 0.0014 1.4 9.1 0.1 6 17 256 267 255 278 0.82 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF675-201 - 568 4e-14 52.5 91.2 5 13 2.6e-05 0.024 14.7 4.5 6 36 284 321 283 324 0.80 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF675-201 - 568 4e-14 52.5 91.2 6 13 0.00022 0.21 11.7 4.7 6 38 312 351 311 352 0.83 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF675-201 - 568 4e-14 52.5 91.2 7 13 0.00082 0.78 9.9 0.5 6 23 340 357 339 363 0.82 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF675-201 - 568 4e-14 52.5 91.2 8 13 1.5e-05 0.015 15.4 6.3 6 35 368 404 367 408 0.87 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF675-201 - 568 4e-14 52.5 91.2 9 13 0.00022 0.21 11.7 5.7 6 34 424 459 423 460 0.73 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF675-201 - 568 4e-14 52.5 91.2 10 13 0.0046 4.4 7.5 0.7 6 19 452 465 451 474 0.76 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF675-201 - 568 4e-14 52.5 91.2 11 13 0.00011 0.099 12.8 6.2 6 38 480 519 479 520 0.82 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF675-201 - 568 4e-14 52.5 91.2 12 13 0.0012 1.2 9.4 0.6 6 22 508 524 507 530 0.82 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF675-201 - 568 4e-14 52.5 91.2 13 13 0.0097 9.2 6.5 0.1 6 18 536 548 535 558 0.80 Zinc ribbon domain # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF675-201.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF675-201.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF675-201.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF675-201.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF675-201.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:12:06 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- KRAB PF01352.27 42 ZNF675-202 - 79 3.2e-24 84.3 0.2 1 1 2.5e-28 4.5e-24 83.8 0.2 1 42 3 44 3 44 0.98 KRAB box # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF675-202.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF675-202.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF675-202.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF675-202.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF675-202.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:12:06 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- KRAB PF01352.27 42 ZNF675-203 - 88 4.3e-24 83.9 0.2 1 1 3.3e-28 6e-24 83.4 0.2 1 42 3 44 3 44 0.98 KRAB box # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF675-203.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF675-203.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF675-203.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF675-203.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF675-203.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:12:06 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- KRAB PF01352.27 42 ZNF675-204 - 77 3.1e-24 84.3 0.2 1 1 2.4e-28 4.3e-24 83.9 0.2 1 42 3 44 3 44 0.98 KRAB box # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF675-204.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF675-204.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF675-204.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF675-204.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF675-204.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:12:07 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF675-205.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF675-205.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF675-205.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF675-205.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF675-205.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:12:07 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZNF675-206 - 492 1.5e-90 293.9 132.5 1 16 1.3 1e+03 0.4 0.1 12 25 65 78 62 79 0.76 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF675-206 - 492 1.5e-90 293.9 132.5 2 16 1.2e-05 0.0098 16.3 4.5 4 24 85 105 82 105 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF675-206 - 492 1.5e-90 293.9 132.5 3 16 0.017 14 6.4 2.7 1 23 110 132 110 135 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF675-206 - 492 1.5e-90 293.9 132.5 4 16 0.0011 0.87 10.1 3.3 2 25 139 162 138 163 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF675-206 - 492 1.5e-90 293.9 132.5 5 16 2.3e-05 0.019 15.4 1.2 12 25 177 190 176 191 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF675-206 - 492 1.5e-90 293.9 132.5 6 16 5.9e-11 4.8e-08 33.1 1.4 1 25 194 218 194 219 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF675-206 - 492 1.5e-90 293.9 132.5 7 16 4.7e-09 3.9e-06 27.1 0.2 1 25 222 246 222 247 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF675-206 - 492 1.5e-90 293.9 132.5 8 16 1.8e-11 1.4e-08 34.7 1.5 2 25 251 274 250 275 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF675-206 - 492 1.5e-90 293.9 132.5 9 16 1.6e-09 1.3e-06 28.6 0.8 2 25 279 302 278 303 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF675-206 - 492 1.5e-90 293.9 132.5 10 16 2e-10 1.7e-07 31.4 4.7 1 26 306 331 306 331 0.97 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF675-206 - 492 1.5e-90 293.9 132.5 11 16 5.1e-12 4.1e-09 36.4 1.0 1 25 334 358 334 359 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF675-206 - 492 1.5e-90 293.9 132.5 12 16 1.8e-10 1.5e-07 31.5 2.1 2 24 363 385 362 387 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF675-206 - 492 1.5e-90 293.9 132.5 13 16 6.4e-09 5.2e-06 26.6 2.6 2 26 391 415 390 415 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF675-206 - 492 1.5e-90 293.9 132.5 14 16 8.3e-12 6.8e-09 35.8 1.2 1 25 418 442 418 443 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF675-206 - 492 1.5e-90 293.9 132.5 15 16 3.7e-10 3e-07 30.6 1.0 2 25 447 470 446 471 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF675-206 - 492 1.5e-90 293.9 132.5 16 16 0.00099 0.81 10.2 0.4 1 13 474 486 474 488 0.94 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZNF675-206 - 492 4.1e-76 247.4 114.3 1 15 8.8 7.2e+03 -2.2 1.1 6 23 70 90 68 90 0.74 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF675-206 - 492 4.1e-76 247.4 114.3 2 15 1e-06 0.00083 19.7 3.9 1 21 96 116 96 117 0.95 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF675-206 - 492 4.1e-76 247.4 114.3 3 15 8.5e-05 0.069 13.6 1.0 2 21 125 144 124 145 0.93 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF675-206 - 492 4.1e-76 247.4 114.3 4 15 4.3e-05 0.035 14.6 0.8 1 17 152 168 152 169 0.95 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF675-206 - 492 4.1e-76 247.4 114.3 5 15 2e-08 1.6e-05 25.1 1.2 1 23 180 202 180 202 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF675-206 - 492 4.1e-76 247.4 114.3 6 15 2.8e-08 2.2e-05 24.6 0.9 1 23 208 230 208 230 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF675-206 - 492 4.1e-76 247.4 114.3 7 15 2e-08 1.6e-05 25.1 0.4 1 23 236 258 236 258 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF675-206 - 492 4.1e-76 247.4 114.3 8 15 2.8e-08 2.3e-05 24.6 0.6 1 23 264 286 264 286 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF675-206 - 492 4.1e-76 247.4 114.3 9 15 1.8e-09 1.4e-06 28.4 0.6 1 23 292 314 292 314 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF675-206 - 492 4.1e-76 247.4 114.3 10 15 1e-08 8.4e-06 26.0 2.6 1 23 320 342 320 342 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF675-206 - 492 4.1e-76 247.4 114.3 11 15 2.9e-08 2.4e-05 24.5 1.0 1 23 348 370 348 370 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF675-206 - 492 4.1e-76 247.4 114.3 12 15 9.5e-08 7.7e-05 22.9 0.4 1 23 376 398 376 398 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF675-206 - 492 4.1e-76 247.4 114.3 13 15 9.4e-09 7.7e-06 26.1 2.6 1 23 404 426 404 426 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF675-206 - 492 4.1e-76 247.4 114.3 14 15 3.7e-08 3e-05 24.2 0.4 1 23 432 454 432 454 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF675-206 - 492 4.1e-76 247.4 114.3 15 15 5.6e-08 4.5e-05 23.7 1.1 1 23 460 482 460 482 0.98 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZNF675-206 - 492 1.2e-36 122.2 108.1 1 14 0.00015 0.12 13.3 3.7 1 21 96 116 96 118 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF675-206 - 492 1.2e-36 122.2 108.1 2 14 0.025 20 6.4 1.1 2 21 125 144 124 146 0.91 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF675-206 - 492 1.2e-36 122.2 108.1 3 14 0.013 10 7.2 0.5 1 16 152 167 152 172 0.85 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF675-206 - 492 1.2e-36 122.2 108.1 4 14 3.7e-05 0.03 15.2 1.0 1 23 180 202 180 203 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF675-206 - 492 1.2e-36 122.2 108.1 5 14 2.7e-05 0.022 15.6 0.7 1 23 208 230 208 231 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF675-206 - 492 1.2e-36 122.2 108.1 6 14 1.9e-05 0.015 16.1 0.3 1 23 236 258 236 259 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF675-206 - 492 1.2e-36 122.2 108.1 7 14 4.3e-05 0.035 14.9 0.5 1 23 264 286 264 287 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF675-206 - 492 1.2e-36 122.2 108.1 8 14 1.4e-05 0.012 16.4 0.5 1 23 292 314 292 315 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF675-206 - 492 1.2e-36 122.2 108.1 9 14 5.7e-05 0.047 14.6 2.1 1 23 320 342 320 343 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF675-206 - 492 1.2e-36 122.2 108.1 10 14 2e-05 0.017 16.0 1.0 1 23 348 370 348 371 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF675-206 - 492 1.2e-36 122.2 108.1 11 14 6.6e-05 0.054 14.4 0.5 1 23 376 398 376 399 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF675-206 - 492 1.2e-36 122.2 108.1 12 14 6.6e-05 0.054 14.4 2.1 1 23 404 426 404 427 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF675-206 - 492 1.2e-36 122.2 108.1 13 14 2.5e-05 0.02 15.7 0.5 1 23 432 454 432 455 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF675-206 - 492 1.2e-36 122.2 108.1 14 14 8.7e-05 0.071 14.0 0.8 1 23 460 482 460 483 0.94 C2H2-type zinc finger zf_UBZ PF18439.1 32 ZNF675-206 - 492 7.5e-23 79.8 76.4 1 15 0.19 1.6e+02 2.0 0.1 7 22 69 84 69 86 0.92 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF675-206 - 492 7.5e-23 79.8 76.4 2 15 0.083 68 3.2 0.6 3 12 96 105 94 114 0.87 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF675-206 - 492 7.5e-23 79.8 76.4 3 15 0.16 1.3e+02 2.3 1.8 4 20 125 142 123 143 0.81 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF675-206 - 492 7.5e-23 79.8 76.4 4 15 0.027 22 4.7 0.2 3 14 152 163 150 169 0.81 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF675-206 - 492 7.5e-23 79.8 76.4 5 15 0.0016 1.3 8.6 0.4 3 20 180 198 178 199 0.82 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF675-206 - 492 7.5e-23 79.8 76.4 6 15 0.0022 1.8 8.3 0.1 3 20 208 226 206 227 0.82 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF675-206 - 492 7.5e-23 79.8 76.4 7 15 0.00083 0.68 9.6 0.2 3 20 236 254 234 255 0.85 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF675-206 - 492 7.5e-23 79.8 76.4 8 15 0.00011 0.093 12.3 0.2 3 20 264 282 262 283 0.93 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF675-206 - 492 7.5e-23 79.8 76.4 9 15 0.00025 0.2 11.3 0.2 3 20 292 310 290 311 0.92 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF675-206 - 492 7.5e-23 79.8 76.4 10 15 0.001 0.82 9.3 0.2 3 20 320 338 318 339 0.89 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF675-206 - 492 7.5e-23 79.8 76.4 11 15 0.00011 0.093 12.3 0.2 3 20 348 366 346 367 0.93 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF675-206 - 492 7.5e-23 79.8 76.4 12 15 7.3e-05 0.059 13.0 0.3 3 20 376 394 374 395 0.91 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF675-206 - 492 7.5e-23 79.8 76.4 13 15 0.00065 0.53 9.9 0.4 3 20 404 422 403 423 0.90 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF675-206 - 492 7.5e-23 79.8 76.4 14 15 3.9e-05 0.031 13.8 0.3 3 20 432 450 430 451 0.93 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF675-206 - 492 7.5e-23 79.8 76.4 15 15 0.0026 2.1 8.0 0.1 3 20 460 478 458 479 0.79 Ubiquitin-Binding Zinc Finger zf-C2H2_6 PF13912.6 27 ZNF675-206 - 492 3.5e-22 77.9 130.4 1 13 0.0013 1.1 9.4 3.1 2 24 96 118 96 121 0.85 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF675-206 - 492 3.5e-22 77.9 130.4 2 13 0.00024 0.19 11.7 0.8 2 18 152 168 151 172 0.87 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF675-206 - 492 3.5e-22 77.9 130.4 3 13 0.00078 0.64 10.1 1.5 2 24 180 202 180 205 0.90 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF675-206 - 492 3.5e-22 77.9 130.4 4 13 7.4e-07 0.00061 19.7 1.4 2 24 208 230 208 233 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF675-206 - 492 3.5e-22 77.9 130.4 5 13 0.00051 0.41 10.7 0.4 2 24 236 258 236 261 0.92 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF675-206 - 492 3.5e-22 77.9 130.4 6 13 0.00037 0.3 11.1 1.2 2 21 264 283 264 287 0.91 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF675-206 - 492 3.5e-22 77.9 130.4 7 13 3.8e-06 0.0031 17.5 0.8 2 24 292 314 292 317 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF675-206 - 492 3.5e-22 77.9 130.4 8 13 4.7e-06 0.0039 17.2 3.2 2 24 320 342 320 345 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF675-206 - 492 3.5e-22 77.9 130.4 9 13 0.00011 0.093 12.8 2.9 2 24 348 370 348 373 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF675-206 - 492 3.5e-22 77.9 130.4 10 13 0.0029 2.4 8.3 1.4 2 24 376 398 376 401 0.89 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF675-206 - 492 3.5e-22 77.9 130.4 11 13 9.7e-05 0.079 13.0 3.1 2 24 404 426 404 429 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF675-206 - 492 3.5e-22 77.9 130.4 12 13 0.00011 0.093 12.8 0.8 2 24 432 454 432 457 0.92 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF675-206 - 492 3.5e-22 77.9 130.4 13 13 0.00059 0.48 10.5 1.0 2 24 460 482 460 485 0.94 C2H2-type zinc finger zf-C2H2_jaz PF12171.8 27 ZNF675-206 - 492 4.6e-22 77.8 78.3 1 15 7.8 6.4e+03 -2.4 0.2 7 12 70 75 69 75 0.85 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF675-206 - 492 4.6e-22 77.8 78.3 2 15 0.1 84 3.6 0.5 2 11 96 105 95 117 0.78 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF675-206 - 492 4.6e-22 77.8 78.3 3 15 0.21 1.8e+02 2.6 1.1 4 22 126 144 125 144 0.89 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF675-206 - 492 4.6e-22 77.8 78.3 4 15 0.0045 3.7 8.0 0.5 2 12 152 162 151 162 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF675-206 - 492 4.6e-22 77.8 78.3 5 15 0.004 3.3 8.1 0.3 2 21 180 199 179 200 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF675-206 - 492 4.6e-22 77.8 78.3 6 15 0.034 28 5.1 0.6 2 21 208 227 207 228 0.80 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF675-206 - 492 4.6e-22 77.8 78.3 7 15 0.0025 2 8.8 0.0 2 22 236 256 235 256 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF675-206 - 492 4.6e-22 77.8 78.3 8 15 0.00024 0.19 12.0 0.2 2 22 264 284 263 284 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF675-206 - 492 4.6e-22 77.8 78.3 9 15 0.0001 0.083 13.2 0.1 2 22 292 312 291 312 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF675-206 - 492 4.6e-22 77.8 78.3 10 15 2.9e-05 0.024 14.9 0.3 2 22 320 340 319 340 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF675-206 - 492 4.6e-22 77.8 78.3 11 15 0.00023 0.19 12.1 0.2 2 22 348 368 347 368 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF675-206 - 492 4.6e-22 77.8 78.3 12 15 0.0022 1.8 8.9 0.3 2 22 376 396 375 396 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF675-206 - 492 4.6e-22 77.8 78.3 13 15 4.6e-05 0.037 14.3 0.2 2 22 404 424 403 424 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF675-206 - 492 4.6e-22 77.8 78.3 14 15 0.001 0.82 10.0 0.1 2 21 432 451 431 452 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF675-206 - 492 4.6e-22 77.8 78.3 15 15 0.005 4.1 7.8 1.0 2 22 460 480 459 480 0.93 Zinc-finger double-stranded RNA-binding XPA_N PF01286.18 32 ZNF675-206 - 492 2.6e-21 75.3 70.2 1 14 0.035 29 4.8 0.7 3 12 97 106 95 113 0.90 XPA protein N-terminal XPA_N PF01286.18 32 ZNF675-206 - 492 2.6e-21 75.3 70.2 2 14 0.088 71 3.6 1.7 3 14 125 136 124 142 0.83 XPA protein N-terminal XPA_N PF01286.18 32 ZNF675-206 - 492 2.6e-21 75.3 70.2 3 14 0.042 34 4.6 0.6 3 12 153 162 152 164 0.89 XPA protein N-terminal XPA_N PF01286.18 32 ZNF675-206 - 492 2.6e-21 75.3 70.2 4 14 0.0003 0.24 11.5 0.2 3 17 181 195 179 199 0.83 XPA protein N-terminal XPA_N PF01286.18 32 ZNF675-206 - 492 2.6e-21 75.3 70.2 5 14 0.0037 3 7.9 0.2 3 12 209 218 207 224 0.90 XPA protein N-terminal XPA_N PF01286.18 32 ZNF675-206 - 492 2.6e-21 75.3 70.2 6 14 0.00057 0.47 10.6 0.1 3 14 237 248 235 254 0.86 XPA protein N-terminal XPA_N PF01286.18 32 ZNF675-206 - 492 2.6e-21 75.3 70.2 7 14 0.00097 0.79 9.8 0.2 3 14 265 276 263 282 0.85 XPA protein N-terminal XPA_N PF01286.18 32 ZNF675-206 - 492 2.6e-21 75.3 70.2 8 14 0.0012 0.97 9.5 0.2 3 14 293 304 291 309 0.90 XPA protein N-terminal XPA_N PF01286.18 32 ZNF675-206 - 492 2.6e-21 75.3 70.2 9 14 0.001 0.83 9.7 0.1 3 14 321 332 319 338 0.86 XPA protein N-terminal XPA_N PF01286.18 32 ZNF675-206 - 492 2.6e-21 75.3 70.2 10 14 0.00097 0.79 9.8 0.2 3 14 349 360 347 366 0.85 XPA protein N-terminal XPA_N PF01286.18 32 ZNF675-206 - 492 2.6e-21 75.3 70.2 11 14 0.00058 0.48 10.5 0.2 3 14 377 388 375 394 0.85 XPA protein N-terminal XPA_N PF01286.18 32 ZNF675-206 - 492 2.6e-21 75.3 70.2 12 14 0.00063 0.51 10.4 0.2 3 14 405 416 403 422 0.87 XPA protein N-terminal XPA_N PF01286.18 32 ZNF675-206 - 492 2.6e-21 75.3 70.2 13 14 0.00087 0.71 10.0 0.3 3 14 433 444 431 450 0.85 XPA protein N-terminal XPA_N PF01286.18 32 ZNF675-206 - 492 2.6e-21 75.3 70.2 14 14 0.012 9.4 6.4 0.1 3 14 461 472 459 477 0.90 XPA protein N-terminal Zn-ribbon_8 PF09723.10 40 ZNF675-206 - 492 4.9e-15 55.3 91.0 1 13 1.1 9.3e+02 0.1 9.0 6 36 96 133 95 135 0.67 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF675-206 - 492 4.9e-15 55.3 91.0 2 13 2.2 1.8e+03 -0.9 2.5 7 25 125 143 118 150 0.68 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF675-206 - 492 4.9e-15 55.3 91.0 3 13 0.0018 1.5 9.0 0.5 6 20 152 166 151 174 0.85 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF675-206 - 492 4.9e-15 55.3 91.0 4 13 0.0014 1.2 9.4 0.1 6 17 180 191 179 202 0.82 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF675-206 - 492 4.9e-15 55.3 91.0 5 13 3.1e-05 0.025 14.7 4.8 6 36 208 245 207 248 0.80 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF675-206 - 492 4.9e-15 55.3 91.0 6 13 0.00028 0.23 11.6 4.9 6 37 236 274 235 275 0.83 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF675-206 - 492 4.9e-15 55.3 91.0 7 13 0.0008 0.66 10.2 0.5 6 23 264 281 263 287 0.82 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF675-206 - 492 4.9e-15 55.3 91.0 8 13 1.4e-05 0.011 15.8 6.1 6 35 292 328 291 332 0.87 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF675-206 - 492 4.9e-15 55.3 91.0 9 13 0.00021 0.17 12.0 5.6 6 34 348 383 347 384 0.73 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF675-206 - 492 4.9e-15 55.3 91.0 10 13 0.0043 3.5 7.8 0.6 6 19 376 389 375 398 0.76 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF675-206 - 492 4.9e-15 55.3 91.0 11 13 0.00011 0.092 12.9 6.3 6 38 404 443 403 444 0.82 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF675-206 - 492 4.9e-15 55.3 91.0 12 13 0.0012 1 9.6 0.6 6 22 432 448 431 454 0.82 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF675-206 - 492 4.9e-15 55.3 91.0 13 13 0.0096 7.8 6.7 0.1 6 18 460 472 459 482 0.80 Zinc ribbon domain zinc_ribbon_15 PF17032.5 86 ZNF675-206 - 492 1e-06 29.4 78.9 1 10 0.1 84 4.0 11.3 33 79 92 137 57 142 0.75 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF675-206 - 492 1e-06 29.4 78.9 2 10 0.0057 4.6 8.1 5.5 35 78 149 192 139 198 0.87 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF675-206 - 492 1e-06 29.4 78.9 3 10 0.00079 0.65 10.8 2.0 35 78 205 248 197 253 0.83 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF675-206 - 492 1e-06 29.4 78.9 4 10 0.00036 0.3 11.9 3.2 32 79 258 305 251 310 0.85 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF675-206 - 492 1e-06 29.4 78.9 5 10 0.00033 0.27 12.0 3.8 33 78 287 332 283 338 0.86 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF675-206 - 492 1e-06 29.4 78.9 6 10 0.00041 0.33 11.7 3.7 30 78 312 360 307 366 0.86 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF675-206 - 492 1e-06 29.4 78.9 7 10 0.00026 0.21 12.3 3.0 32 78 342 388 334 394 0.86 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF675-206 - 492 1e-06 29.4 78.9 8 10 0.0015 1.2 9.9 2.9 32 78 370 416 364 422 0.80 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF675-206 - 492 1e-06 29.4 78.9 9 10 0.00056 0.46 11.3 2.8 32 78 398 444 393 450 0.85 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF675-206 - 492 1e-06 29.4 78.9 10 10 0.0016 1.3 9.8 3.1 32 79 426 473 419 478 0.84 zinc-ribbon family # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF675-206.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF675-206.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF675-206.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF675-206.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF675-206.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:12:08 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- KRAB PF01352.27 42 ZNF675-207 - 118 8.4e-24 83.0 0.2 1 1 6.5e-28 1.2e-23 82.5 0.2 1 42 3 44 3 44 0.98 KRAB box # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF675-207.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF675-207.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF675-207.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF675-207.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF675-207.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:12:08 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- KRAB PF01352.27 42 ZNF675-208 - 101 5.8e-24 83.5 0.2 1 1 4.6e-28 8.3e-24 83.0 0.2 1 42 3 44 3 44 0.98 KRAB box # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF675-208.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF675-208.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF675-208.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF675-208.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF675-208.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:12:09 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- KRAB PF01352.27 42 ZNF675-209 - 117 7.3e-24 83.2 0.2 1 1 6.4e-28 1.1e-23 82.5 0.2 1 42 3 44 3 44 0.98 KRAB box # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF675-209.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF675-209.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF675-209.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF675-209.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF675-209.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:12:09 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZNF677-201 - 584 1e-82 269.1 79.2 1 12 0.055 47 4.6 0.1 7 17 204 214 203 216 0.89 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF677-201 - 584 1e-82 269.1 79.2 2 12 3.5e-05 0.03 14.8 0.9 7 25 255 273 249 274 0.89 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF677-201 - 584 1e-82 269.1 79.2 3 12 2.7e-10 2.3e-07 30.9 0.3 1 25 277 301 277 302 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF677-201 - 584 1e-82 269.1 79.2 4 12 1.9e-11 1.6e-08 34.6 0.8 1 24 305 328 305 330 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF677-201 - 584 1e-82 269.1 79.2 5 12 1.9e-11 1.6e-08 34.6 0.2 1 24 333 356 333 358 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF677-201 - 584 1e-82 269.1 79.2 6 12 2.7e-11 2.3e-08 34.1 0.5 1 25 361 385 361 386 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF677-201 - 584 1e-82 269.1 79.2 7 12 4e-10 3.4e-07 30.4 0.4 1 26 389 414 389 414 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF677-201 - 584 1e-82 269.1 79.2 8 12 4.1e-09 3.5e-06 27.2 1.1 1 24 417 440 417 442 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF677-201 - 584 1e-82 269.1 79.2 9 12 9.8e-12 8.4e-09 35.5 0.6 1 24 445 468 445 470 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF677-201 - 584 1e-82 269.1 79.2 10 12 1.9e-11 1.6e-08 34.6 1.3 1 25 473 497 473 498 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF677-201 - 584 1e-82 269.1 79.2 11 12 5.3e-12 4.6e-09 36.3 1.3 1 25 501 525 501 526 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF677-201 - 584 1e-82 269.1 79.2 12 12 0.52 4.5e+02 1.6 3.8 1 13 529 541 529 545 0.84 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZNF677-201 - 584 2.4e-63 207.2 81.1 1 11 1.9e-10 1.6e-07 31.4 1.0 1 23 263 285 263 285 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF677-201 - 584 2.4e-63 207.2 81.1 2 11 8.4e-10 7.2e-07 29.3 2.7 1 23 291 313 291 313 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF677-201 - 584 2.4e-63 207.2 81.1 3 11 2.8e-09 2.4e-06 27.7 1.4 1 23 319 341 319 341 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF677-201 - 584 2.4e-63 207.2 81.1 4 11 8.7e-08 7.4e-05 23.0 0.5 1 23 347 369 347 369 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF677-201 - 584 2.4e-63 207.2 81.1 5 11 1.1e-07 9e-05 22.7 0.6 1 23 375 397 375 397 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF677-201 - 584 2.4e-63 207.2 81.1 6 11 1.3e-08 1.1e-05 25.6 3.6 1 23 403 425 403 425 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF677-201 - 584 2.4e-63 207.2 81.1 7 11 3.7e-08 3.1e-05 24.2 0.6 1 23 431 453 431 453 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF677-201 - 584 2.4e-63 207.2 81.1 8 11 9.5e-08 8.2e-05 22.9 2.7 1 23 459 481 459 481 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF677-201 - 584 2.4e-63 207.2 81.1 9 11 2.9e-08 2.5e-05 24.5 1.0 1 23 487 509 487 509 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF677-201 - 584 2.4e-63 207.2 81.1 10 11 6.6e-09 5.6e-06 26.5 0.8 1 23 515 537 515 537 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF677-201 - 584 2.4e-63 207.2 81.1 11 11 7.5 6.4e+03 -2.0 0.1 14 21 556 563 553 572 0.57 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZNF677-201 - 584 1.5e-29 100.1 71.7 1 10 1.1e-05 0.0092 16.7 0.6 1 23 263 285 263 286 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF677-201 - 584 1.5e-29 100.1 71.7 2 10 1.6e-05 0.013 16.2 2.2 1 23 291 313 291 314 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF677-201 - 584 1.5e-29 100.1 71.7 3 10 4.4e-05 0.037 14.9 1.2 1 23 319 341 319 342 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF677-201 - 584 1.5e-29 100.1 71.7 4 10 0.00033 0.28 12.1 0.6 1 23 347 369 347 370 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF677-201 - 584 1.5e-29 100.1 71.7 5 10 7.2e-05 0.061 14.2 0.5 1 23 375 397 375 398 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF677-201 - 584 1.5e-29 100.1 71.7 6 10 3.2e-05 0.028 15.3 2.3 1 23 403 425 403 426 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF677-201 - 584 1.5e-29 100.1 71.7 7 10 0.00028 0.24 12.3 0.7 1 23 431 453 431 454 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF677-201 - 584 1.5e-29 100.1 71.7 8 10 0.0011 0.91 10.5 2.0 1 23 459 481 459 482 0.97 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF677-201 - 584 1.5e-29 100.1 71.7 9 10 9.6e-06 0.0082 16.9 0.7 1 23 487 509 487 510 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF677-201 - 584 1.5e-29 100.1 71.7 10 10 1.3e-05 0.011 16.5 0.4 1 23 515 537 515 538 0.94 C2H2-type zinc finger KRAB PF01352.27 42 ZNF677-201 - 584 2e-26 91.3 0.2 1 2 8.4e-29 7.2e-26 89.6 0.3 3 42 9 48 7 48 0.97 KRAB box KRAB PF01352.27 42 ZNF677-201 - 584 2e-26 91.3 0.2 2 2 3.7 3.1e+03 -2.1 0.0 21 33 72 84 56 85 0.58 KRAB box zf-C2H2_6 PF13912.6 27 ZNF677-201 - 584 6.3e-12 45.2 72.0 1 10 0.0017 1.5 8.9 1.1 2 24 263 285 262 288 0.89 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF677-201 - 584 6.3e-12 45.2 72.0 2 10 0.00071 0.6 10.2 2.3 2 24 291 313 291 316 0.87 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF677-201 - 584 6.3e-12 45.2 72.0 3 10 0.081 69 3.6 0.7 2 10 319 327 319 339 0.95 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF677-201 - 584 6.3e-12 45.2 72.0 4 10 0.005 4.3 7.5 0.5 2 11 347 356 347 357 0.96 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF677-201 - 584 6.3e-12 45.2 72.0 5 10 0.00015 0.13 12.3 0.6 2 24 375 397 375 400 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF677-201 - 584 6.3e-12 45.2 72.0 6 10 0.007 6 7.0 1.8 2 12 403 413 403 421 0.92 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF677-201 - 584 6.3e-12 45.2 72.0 7 10 0.0081 6.9 6.8 0.3 2 11 431 440 431 453 0.86 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF677-201 - 584 6.3e-12 45.2 72.0 8 10 0.017 15 5.7 1.6 2 24 459 481 459 484 0.86 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF677-201 - 584 6.3e-12 45.2 72.0 9 10 4.3e-05 0.037 14.1 1.3 2 24 487 509 487 512 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF677-201 - 584 6.3e-12 45.2 72.0 10 10 4.1e-05 0.035 14.1 0.6 2 24 515 537 515 539 0.92 C2H2-type zinc finger Zn-ribbon_8 PF09723.10 40 ZNF677-201 - 584 3e-10 40.0 53.3 1 8 3.7e-05 0.032 14.4 3.2 6 35 263 299 262 302 0.88 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF677-201 - 584 3e-10 40.0 53.3 2 8 0.00046 0.39 10.9 5.4 6 34 291 326 290 331 0.91 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF677-201 - 584 3e-10 40.0 53.3 3 8 0.0015 1.3 9.2 4.0 6 34 319 354 318 360 0.89 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF677-201 - 584 3e-10 40.0 53.3 4 8 0.0018 1.6 8.9 6.0 6 36 375 412 374 415 0.76 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF677-201 - 584 3e-10 40.0 53.3 5 8 0.00081 0.69 10.1 3.1 6 34 403 438 402 442 0.86 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF677-201 - 584 3e-10 40.0 53.3 6 8 0.05 42 4.4 0.4 6 15 459 468 458 474 0.86 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF677-201 - 584 3e-10 40.0 53.3 7 8 0.00097 0.82 9.8 0.1 6 20 487 501 486 509 0.82 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF677-201 - 584 3e-10 40.0 53.3 8 8 0.00039 0.34 11.1 0.9 6 22 515 537 514 545 0.64 Zinc ribbon domain XPA_N PF01286.18 32 ZNF677-201 - 584 1.9e-07 31.0 35.6 1 9 0.0091 7.8 6.6 0.2 3 14 264 275 263 281 0.87 XPA protein N-terminal XPA_N PF01286.18 32 ZNF677-201 - 584 1.9e-07 31.0 35.6 2 9 0.02 17 5.5 0.8 3 12 292 301 290 306 0.89 XPA protein N-terminal XPA_N PF01286.18 32 ZNF677-201 - 584 1.9e-07 31.0 35.6 3 9 0.0066 5.7 7.1 0.0 3 13 348 358 346 365 0.76 XPA protein N-terminal XPA_N PF01286.18 32 ZNF677-201 - 584 1.9e-07 31.0 35.6 4 9 0.015 13 6.0 0.2 3 12 376 385 374 392 0.89 XPA protein N-terminal XPA_N PF01286.18 32 ZNF677-201 - 584 1.9e-07 31.0 35.6 5 9 0.019 16 5.6 0.4 3 13 404 414 402 420 0.88 XPA protein N-terminal XPA_N PF01286.18 32 ZNF677-201 - 584 1.9e-07 31.0 35.6 6 9 0.19 1.6e+02 2.4 0.1 3 14 432 443 430 446 0.88 XPA protein N-terminal XPA_N PF01286.18 32 ZNF677-201 - 584 1.9e-07 31.0 35.6 7 9 0.043 37 4.5 0.1 3 12 460 469 458 477 0.76 XPA protein N-terminal XPA_N PF01286.18 32 ZNF677-201 - 584 1.9e-07 31.0 35.6 8 9 0.012 10 6.3 0.1 3 12 488 497 486 504 0.89 XPA protein N-terminal XPA_N PF01286.18 32 ZNF677-201 - 584 1.9e-07 31.0 35.6 9 9 0.013 11 6.1 0.2 3 12 516 525 514 526 0.88 XPA protein N-terminal # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF677-201.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF677-201.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF677-201.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF677-201.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF677-201.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:12:09 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF677-202.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF677-202.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF677-202.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF677-202.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF677-202.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:12:10 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF677-203.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF677-203.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF677-203.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF677-203.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF677-203.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:12:10 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- KRAB PF01352.27 42 ZNF677-204 - 80 1.8e-27 94.7 0.3 1 1 1.3e-31 2.4e-27 94.3 0.3 3 42 9 48 7 48 0.97 KRAB box # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF677-204.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF677-204.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF677-204.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF677-204.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF677-204.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:12:10 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF677-205.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF677-205.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF677-205.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF677-205.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF677-205.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:12:11 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZNF677-206 - 584 1e-82 269.1 79.2 1 12 0.055 47 4.6 0.1 7 17 204 214 203 216 0.89 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF677-206 - 584 1e-82 269.1 79.2 2 12 3.5e-05 0.03 14.8 0.9 7 25 255 273 249 274 0.89 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF677-206 - 584 1e-82 269.1 79.2 3 12 2.7e-10 2.3e-07 30.9 0.3 1 25 277 301 277 302 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF677-206 - 584 1e-82 269.1 79.2 4 12 1.9e-11 1.6e-08 34.6 0.8 1 24 305 328 305 330 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF677-206 - 584 1e-82 269.1 79.2 5 12 1.9e-11 1.6e-08 34.6 0.2 1 24 333 356 333 358 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF677-206 - 584 1e-82 269.1 79.2 6 12 2.7e-11 2.3e-08 34.1 0.5 1 25 361 385 361 386 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF677-206 - 584 1e-82 269.1 79.2 7 12 4e-10 3.4e-07 30.4 0.4 1 26 389 414 389 414 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF677-206 - 584 1e-82 269.1 79.2 8 12 4.1e-09 3.5e-06 27.2 1.1 1 24 417 440 417 442 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF677-206 - 584 1e-82 269.1 79.2 9 12 9.8e-12 8.4e-09 35.5 0.6 1 24 445 468 445 470 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF677-206 - 584 1e-82 269.1 79.2 10 12 1.9e-11 1.6e-08 34.6 1.3 1 25 473 497 473 498 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF677-206 - 584 1e-82 269.1 79.2 11 12 5.3e-12 4.6e-09 36.3 1.3 1 25 501 525 501 526 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF677-206 - 584 1e-82 269.1 79.2 12 12 0.52 4.5e+02 1.6 3.8 1 13 529 541 529 545 0.84 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZNF677-206 - 584 2.4e-63 207.2 81.1 1 11 1.9e-10 1.6e-07 31.4 1.0 1 23 263 285 263 285 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF677-206 - 584 2.4e-63 207.2 81.1 2 11 8.4e-10 7.2e-07 29.3 2.7 1 23 291 313 291 313 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF677-206 - 584 2.4e-63 207.2 81.1 3 11 2.8e-09 2.4e-06 27.7 1.4 1 23 319 341 319 341 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF677-206 - 584 2.4e-63 207.2 81.1 4 11 8.7e-08 7.4e-05 23.0 0.5 1 23 347 369 347 369 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF677-206 - 584 2.4e-63 207.2 81.1 5 11 1.1e-07 9e-05 22.7 0.6 1 23 375 397 375 397 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF677-206 - 584 2.4e-63 207.2 81.1 6 11 1.3e-08 1.1e-05 25.6 3.6 1 23 403 425 403 425 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF677-206 - 584 2.4e-63 207.2 81.1 7 11 3.7e-08 3.1e-05 24.2 0.6 1 23 431 453 431 453 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF677-206 - 584 2.4e-63 207.2 81.1 8 11 9.5e-08 8.2e-05 22.9 2.7 1 23 459 481 459 481 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF677-206 - 584 2.4e-63 207.2 81.1 9 11 2.9e-08 2.5e-05 24.5 1.0 1 23 487 509 487 509 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF677-206 - 584 2.4e-63 207.2 81.1 10 11 6.6e-09 5.6e-06 26.5 0.8 1 23 515 537 515 537 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF677-206 - 584 2.4e-63 207.2 81.1 11 11 7.5 6.4e+03 -2.0 0.1 14 21 556 563 553 572 0.57 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZNF677-206 - 584 1.5e-29 100.1 71.7 1 10 1.1e-05 0.0092 16.7 0.6 1 23 263 285 263 286 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF677-206 - 584 1.5e-29 100.1 71.7 2 10 1.6e-05 0.013 16.2 2.2 1 23 291 313 291 314 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF677-206 - 584 1.5e-29 100.1 71.7 3 10 4.4e-05 0.037 14.9 1.2 1 23 319 341 319 342 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF677-206 - 584 1.5e-29 100.1 71.7 4 10 0.00033 0.28 12.1 0.6 1 23 347 369 347 370 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF677-206 - 584 1.5e-29 100.1 71.7 5 10 7.2e-05 0.061 14.2 0.5 1 23 375 397 375 398 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF677-206 - 584 1.5e-29 100.1 71.7 6 10 3.2e-05 0.028 15.3 2.3 1 23 403 425 403 426 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF677-206 - 584 1.5e-29 100.1 71.7 7 10 0.00028 0.24 12.3 0.7 1 23 431 453 431 454 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF677-206 - 584 1.5e-29 100.1 71.7 8 10 0.0011 0.91 10.5 2.0 1 23 459 481 459 482 0.97 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF677-206 - 584 1.5e-29 100.1 71.7 9 10 9.6e-06 0.0082 16.9 0.7 1 23 487 509 487 510 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF677-206 - 584 1.5e-29 100.1 71.7 10 10 1.3e-05 0.011 16.5 0.4 1 23 515 537 515 538 0.94 C2H2-type zinc finger KRAB PF01352.27 42 ZNF677-206 - 584 2e-26 91.3 0.2 1 2 8.4e-29 7.2e-26 89.6 0.3 3 42 9 48 7 48 0.97 KRAB box KRAB PF01352.27 42 ZNF677-206 - 584 2e-26 91.3 0.2 2 2 3.7 3.1e+03 -2.1 0.0 21 33 72 84 56 85 0.58 KRAB box zf-C2H2_6 PF13912.6 27 ZNF677-206 - 584 6.3e-12 45.2 72.0 1 10 0.0017 1.5 8.9 1.1 2 24 263 285 262 288 0.89 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF677-206 - 584 6.3e-12 45.2 72.0 2 10 0.00071 0.6 10.2 2.3 2 24 291 313 291 316 0.87 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF677-206 - 584 6.3e-12 45.2 72.0 3 10 0.081 69 3.6 0.7 2 10 319 327 319 339 0.95 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF677-206 - 584 6.3e-12 45.2 72.0 4 10 0.005 4.3 7.5 0.5 2 11 347 356 347 357 0.96 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF677-206 - 584 6.3e-12 45.2 72.0 5 10 0.00015 0.13 12.3 0.6 2 24 375 397 375 400 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF677-206 - 584 6.3e-12 45.2 72.0 6 10 0.007 6 7.0 1.8 2 12 403 413 403 421 0.92 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF677-206 - 584 6.3e-12 45.2 72.0 7 10 0.0081 6.9 6.8 0.3 2 11 431 440 431 453 0.86 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF677-206 - 584 6.3e-12 45.2 72.0 8 10 0.017 15 5.7 1.6 2 24 459 481 459 484 0.86 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF677-206 - 584 6.3e-12 45.2 72.0 9 10 4.3e-05 0.037 14.1 1.3 2 24 487 509 487 512 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF677-206 - 584 6.3e-12 45.2 72.0 10 10 4.1e-05 0.035 14.1 0.6 2 24 515 537 515 539 0.92 C2H2-type zinc finger Zn-ribbon_8 PF09723.10 40 ZNF677-206 - 584 3e-10 40.0 53.3 1 8 3.7e-05 0.032 14.4 3.2 6 35 263 299 262 302 0.88 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF677-206 - 584 3e-10 40.0 53.3 2 8 0.00046 0.39 10.9 5.4 6 34 291 326 290 331 0.91 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF677-206 - 584 3e-10 40.0 53.3 3 8 0.0015 1.3 9.2 4.0 6 34 319 354 318 360 0.89 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF677-206 - 584 3e-10 40.0 53.3 4 8 0.0018 1.6 8.9 6.0 6 36 375 412 374 415 0.76 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF677-206 - 584 3e-10 40.0 53.3 5 8 0.00081 0.69 10.1 3.1 6 34 403 438 402 442 0.86 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF677-206 - 584 3e-10 40.0 53.3 6 8 0.05 42 4.4 0.4 6 15 459 468 458 474 0.86 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF677-206 - 584 3e-10 40.0 53.3 7 8 0.00097 0.82 9.8 0.1 6 20 487 501 486 509 0.82 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF677-206 - 584 3e-10 40.0 53.3 8 8 0.00039 0.34 11.1 0.9 6 22 515 537 514 545 0.64 Zinc ribbon domain XPA_N PF01286.18 32 ZNF677-206 - 584 1.9e-07 31.0 35.6 1 9 0.0091 7.8 6.6 0.2 3 14 264 275 263 281 0.87 XPA protein N-terminal XPA_N PF01286.18 32 ZNF677-206 - 584 1.9e-07 31.0 35.6 2 9 0.02 17 5.5 0.8 3 12 292 301 290 306 0.89 XPA protein N-terminal XPA_N PF01286.18 32 ZNF677-206 - 584 1.9e-07 31.0 35.6 3 9 0.0066 5.7 7.1 0.0 3 13 348 358 346 365 0.76 XPA protein N-terminal XPA_N PF01286.18 32 ZNF677-206 - 584 1.9e-07 31.0 35.6 4 9 0.015 13 6.0 0.2 3 12 376 385 374 392 0.89 XPA protein N-terminal XPA_N PF01286.18 32 ZNF677-206 - 584 1.9e-07 31.0 35.6 5 9 0.019 16 5.6 0.4 3 13 404 414 402 420 0.88 XPA protein N-terminal XPA_N PF01286.18 32 ZNF677-206 - 584 1.9e-07 31.0 35.6 6 9 0.19 1.6e+02 2.4 0.1 3 14 432 443 430 446 0.88 XPA protein N-terminal XPA_N PF01286.18 32 ZNF677-206 - 584 1.9e-07 31.0 35.6 7 9 0.043 37 4.5 0.1 3 12 460 469 458 477 0.76 XPA protein N-terminal XPA_N PF01286.18 32 ZNF677-206 - 584 1.9e-07 31.0 35.6 8 9 0.012 10 6.3 0.1 3 12 488 497 486 504 0.89 XPA protein N-terminal XPA_N PF01286.18 32 ZNF677-206 - 584 1.9e-07 31.0 35.6 9 9 0.013 11 6.1 0.2 3 12 516 525 514 526 0.88 XPA protein N-terminal # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF677-206.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF677-206.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF677-206.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF677-206.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF677-206.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:12:11 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- KRAB PF01352.27 42 ZNF677-207 - 71 1.4e-27 95.1 0.3 1 1 9.5e-32 1.7e-27 94.8 0.3 3 42 9 48 7 48 0.97 KRAB box # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF677-207.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF677-207.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF677-207.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF677-207.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF677-207.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:12:12 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- KRAB PF01352.27 42 ZNF677-208 - 77 1.6e-27 94.9 0.3 1 1 1.2e-31 2.1e-27 94.5 0.3 3 42 9 48 7 48 0.97 KRAB box # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF677-208.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF677-208.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF677-208.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF677-208.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF677-208.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:12:12 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF677-209.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF677-209.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF677-209.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF677-209.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF677-209.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:12:12 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- KRAB PF01352.27 42 ZNF677-210 - 68 1.2e-27 95.2 0.3 1 1 8.5e-32 1.5e-27 94.9 0.3 3 42 9 48 7 48 0.97 KRAB box # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF677-210.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF677-210.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF677-210.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF677-210.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF677-210.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:12:12 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- KRAB PF01352.27 42 ZNF677-211 - 68 1.2e-27 95.2 0.3 1 1 8.5e-32 1.5e-27 94.9 0.3 3 42 9 48 7 48 0.97 KRAB box # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF677-211.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF677-211.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF677-211.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF677-211.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF677-211.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:12:13 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZNF678-201 - 525 4.3e-128 412.6 131.3 1 16 0.0053 5.3 7.6 0.6 10 24 92 106 88 107 0.89 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF678-201 - 525 4.3e-128 412.6 131.3 2 16 2.8e-11 2.8e-08 33.8 1.4 2 25 112 135 112 136 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF678-201 - 525 4.3e-128 412.6 131.3 3 16 2.4e-12 2.4e-09 37.2 1.2 1 25 139 163 139 163 0.97 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF678-201 - 525 4.3e-128 412.6 131.3 4 16 2.5e-11 2.5e-08 34.0 1.0 2 25 168 191 167 191 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF678-201 - 525 4.3e-128 412.6 131.3 5 16 2e-10 2e-07 31.1 0.6 2 25 196 219 195 220 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF678-201 - 525 4.3e-128 412.6 131.3 6 16 5.1e-11 5e-08 33.0 5.0 1 25 223 247 223 248 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF678-201 - 525 4.3e-128 412.6 131.3 7 16 5.3e-11 5.2e-08 33.0 0.5 1 25 251 275 251 276 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF678-201 - 525 4.3e-128 412.6 131.3 8 16 6.8e-13 6.8e-10 38.9 2.2 1 25 279 303 279 304 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF678-201 - 525 4.3e-128 412.6 131.3 9 16 3.3e-13 3.3e-10 39.9 1.2 1 25 307 331 307 332 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF678-201 - 525 4.3e-128 412.6 131.3 10 16 2e-11 2e-08 34.3 2.3 1 25 335 359 335 360 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF678-201 - 525 4.3e-128 412.6 131.3 11 16 2.5e-12 2.5e-09 37.1 2.1 1 25 363 387 363 388 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF678-201 - 525 4.3e-128 412.6 131.3 12 16 1.5e-11 1.5e-08 34.7 0.7 1 26 391 416 391 416 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF678-201 - 525 4.3e-128 412.6 131.3 13 16 3.7e-11 3.7e-08 33.4 3.5 1 24 419 442 419 444 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF678-201 - 525 4.3e-128 412.6 131.3 14 16 2.9e-11 2.9e-08 33.8 1.0 2 25 448 471 447 472 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF678-201 - 525 4.3e-128 412.6 131.3 15 16 6.3e-11 6.3e-08 32.7 2.1 1 24 475 498 475 500 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF678-201 - 525 4.3e-128 412.6 131.3 16 16 1.2 1.2e+03 0.2 0.4 10 21 512 523 503 524 0.70 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZNF678-201 - 525 2.1e-69 226.3 142.8 1 17 4.3 4.3e+03 -1.5 0.0 11 20 48 57 45 59 0.77 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF678-201 - 525 2.1e-69 226.3 142.8 2 17 0.031 31 5.3 0.3 1 23 97 119 97 119 0.93 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF678-201 - 525 2.1e-69 226.3 142.8 3 17 1.8e-09 1.8e-06 28.1 3.3 1 23 125 147 125 147 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF678-201 - 525 2.1e-69 226.3 142.8 4 17 2.1e-07 0.00021 21.6 0.3 1 23 153 175 153 175 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF678-201 - 525 2.1e-69 226.3 142.8 5 17 3.2e-07 0.00031 21.0 0.5 1 23 181 203 181 203 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF678-201 - 525 2.1e-69 226.3 142.8 6 17 1e-08 1e-05 25.7 0.5 1 23 209 231 209 231 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF678-201 - 525 2.1e-69 226.3 142.8 7 17 7.5e-05 0.075 13.5 5.0 1 23 237 259 237 259 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF678-201 - 525 2.1e-69 226.3 142.8 8 17 6.3e-07 0.00062 20.1 4.0 1 23 265 287 265 287 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF678-201 - 525 2.1e-69 226.3 142.8 9 17 2.4e-08 2.4e-05 24.6 0.7 1 23 293 315 293 315 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF678-201 - 525 2.1e-69 226.3 142.8 10 17 4.4e-08 4.4e-05 23.7 5.4 1 23 321 343 321 343 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF678-201 - 525 2.1e-69 226.3 142.8 11 17 8.2e-09 8.1e-06 26.0 1.6 1 23 349 371 349 371 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF678-201 - 525 2.1e-69 226.3 142.8 12 17 3.8e-08 3.8e-05 23.9 1.9 1 23 377 399 377 399 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF678-201 - 525 2.1e-69 226.3 142.8 13 17 1.3e-08 1.3e-05 25.4 5.2 1 23 405 427 405 427 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF678-201 - 525 2.1e-69 226.3 142.8 14 17 1.2e-06 0.0012 19.2 1.3 1 23 433 455 433 455 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF678-201 - 525 2.1e-69 226.3 142.8 15 17 1e-08 1e-05 25.7 1.1 1 23 461 483 461 483 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF678-201 - 525 2.1e-69 226.3 142.8 16 17 0.0021 2.1 9.0 1.7 1 14 489 502 489 502 0.91 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF678-201 - 525 2.1e-69 226.3 142.8 17 17 7 7e+03 -2.1 1.4 2 7 518 523 517 523 0.87 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZNF678-201 - 525 5.8e-39 129.4 132.2 1 15 0.00059 0.58 11.1 0.4 1 23 97 119 97 120 0.88 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF678-201 - 525 5.8e-39 129.4 132.2 2 15 4.1e-06 0.004 17.9 2.6 1 23 125 147 125 148 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF678-201 - 525 5.8e-39 129.4 132.2 3 15 8.6e-05 0.085 13.7 0.5 1 23 153 175 153 176 0.87 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF678-201 - 525 5.8e-39 129.4 132.2 4 15 0.00046 0.46 11.5 0.7 1 23 181 203 181 204 0.87 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF678-201 - 525 5.8e-39 129.4 132.2 5 15 3.4e-05 0.034 15.0 0.5 1 23 209 231 209 232 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF678-201 - 525 5.8e-39 129.4 132.2 6 15 0.00073 0.73 10.8 4.1 1 23 237 259 237 260 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF678-201 - 525 5.8e-39 129.4 132.2 7 15 1.9e-05 0.019 15.7 3.1 1 23 265 287 265 288 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF678-201 - 525 5.8e-39 129.4 132.2 8 15 1.3e-05 0.013 16.2 0.7 1 23 293 315 293 316 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF678-201 - 525 5.8e-39 129.4 132.2 9 15 8.5e-06 0.0084 16.9 4.5 1 23 321 343 321 344 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF678-201 - 525 5.8e-39 129.4 132.2 10 15 8.3e-06 0.0083 16.9 1.0 1 23 349 371 349 372 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF678-201 - 525 5.8e-39 129.4 132.2 11 15 2.9e-05 0.029 15.2 1.4 1 23 377 399 377 400 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF678-201 - 525 5.8e-39 129.4 132.2 12 15 2.4e-05 0.024 15.4 4.7 1 23 405 427 405 428 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF678-201 - 525 5.8e-39 129.4 132.2 13 15 0.00012 0.12 13.3 1.1 1 23 433 455 433 456 0.85 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF678-201 - 525 5.8e-39 129.4 132.2 14 15 9.8e-06 0.0098 16.7 1.0 1 23 461 483 461 484 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF678-201 - 525 5.8e-39 129.4 132.2 15 15 0.027 27 6.0 0.8 1 14 489 501 489 508 0.81 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF678-201 - 525 1.1e-30 105.0 135.9 1 15 0.33 3.3e+02 1.5 1.0 2 22 97 117 96 121 0.73 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF678-201 - 525 1.1e-30 105.0 135.9 2 15 1.4e-06 0.0014 18.6 2.6 2 24 125 147 125 150 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF678-201 - 525 1.1e-30 105.0 135.9 3 15 1.6e-05 0.016 15.2 0.4 2 24 153 175 153 178 0.88 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF678-201 - 525 1.1e-30 105.0 135.9 4 15 7.6e-06 0.0076 16.2 0.4 2 25 181 204 181 206 0.92 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF678-201 - 525 1.1e-30 105.0 135.9 5 15 1.8e-05 0.018 15.0 0.4 2 24 209 231 209 234 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF678-201 - 525 1.1e-30 105.0 135.9 6 15 3.4e-05 0.034 14.2 4.3 2 24 237 259 237 262 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF678-201 - 525 1.1e-30 105.0 135.9 7 15 0.0097 9.7 6.3 2.4 2 22 265 285 265 289 0.81 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF678-201 - 525 1.1e-30 105.0 135.9 8 15 1.7e-05 0.017 15.1 0.9 2 24 293 315 293 318 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF678-201 - 525 1.1e-30 105.0 135.9 9 15 0.0029 2.9 8.0 4.6 2 24 321 343 321 346 0.91 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF678-201 - 525 1.1e-30 105.0 135.9 10 15 1.1e-05 0.011 15.8 1.1 2 24 349 371 349 374 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF678-201 - 525 1.1e-30 105.0 135.9 11 15 5.5e-07 0.00055 19.9 2.0 2 24 377 399 377 401 0.95 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF678-201 - 525 1.1e-30 105.0 135.9 12 15 0.0015 1.5 8.9 5.2 2 24 405 427 405 430 0.92 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF678-201 - 525 1.1e-30 105.0 135.9 13 15 0.0016 1.6 8.8 0.7 2 11 433 442 433 457 0.88 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF678-201 - 525 1.1e-30 105.0 135.9 14 15 9.1e-06 0.0091 16.0 1.3 2 24 461 483 461 486 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF678-201 - 525 1.1e-30 105.0 135.9 15 15 0.002 2 8.5 1.1 1 11 488 498 488 499 0.92 C2H2-type zinc finger Zn-ribbon_8 PF09723.10 40 ZNF678-201 - 525 5.9e-20 71.1 99.4 1 15 0.012 12 6.1 6.3 6 34 97 132 96 137 0.75 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF678-201 - 525 5.9e-20 71.1 99.4 2 15 0.00046 0.45 10.7 7.7 6 34 125 160 124 163 0.89 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF678-201 - 525 5.9e-20 71.1 99.4 3 15 0.0013 1.3 9.2 0.2 6 18 153 165 152 175 0.81 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF678-201 - 525 5.9e-20 71.1 99.4 4 15 2.9e-05 0.029 14.5 2.5 6 36 181 218 180 221 0.82 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF678-201 - 525 5.9e-20 71.1 99.4 5 15 0.0063 6.2 7.0 0.4 6 21 209 224 208 231 0.82 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF678-201 - 525 5.9e-20 71.1 99.4 6 15 0.026 26 5.1 0.9 6 21 237 252 236 259 0.84 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF678-201 - 525 5.9e-20 71.1 99.4 7 15 0.00024 0.24 11.6 8.5 6 35 265 301 264 303 0.88 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF678-201 - 525 5.9e-20 71.1 99.4 8 15 0.00014 0.14 12.3 8.6 6 38 293 332 292 334 0.75 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF678-201 - 525 5.9e-20 71.1 99.4 9 15 0.0032 3.2 8.0 2.1 6 19 321 334 320 343 0.81 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF678-201 - 525 5.9e-20 71.1 99.4 10 15 0.00027 0.27 11.4 0.2 6 21 349 364 348 371 0.84 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF678-201 - 525 5.9e-20 71.1 99.4 11 15 0.00022 0.22 11.7 0.2 6 22 377 393 376 398 0.87 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF678-201 - 525 5.9e-20 71.1 99.4 12 15 0.00059 0.59 10.3 8.7 6 34 405 440 404 444 0.84 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF678-201 - 525 5.9e-20 71.1 99.4 13 15 0.00022 0.21 11.7 6.2 6 35 433 469 431 472 0.86 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF678-201 - 525 5.9e-20 71.1 99.4 14 15 0.00037 0.37 10.9 0.6 6 22 461 477 460 483 0.85 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF678-201 - 525 5.9e-20 71.1 99.4 15 15 5.8e-05 0.058 13.5 2.5 6 34 489 524 488 525 0.83 Zinc ribbon domain zf-C2H2_11 PF16622.5 29 ZNF678-201 - 525 1.1e-11 44.2 80.5 1 17 8.8 8.8e+03 -3.4 0.1 19 24 52 57 50 57 0.80 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF678-201 - 525 1.1e-11 44.2 80.5 2 17 4.4e-05 0.043 13.6 0.4 5 26 97 118 94 119 0.89 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF678-201 - 525 1.1e-11 44.2 80.5 3 17 0.035 35 4.3 0.2 5 26 125 146 122 147 0.87 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF678-201 - 525 1.1e-11 44.2 80.5 4 17 0.3 3e+02 1.3 0.0 5 14 153 162 150 174 0.83 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF678-201 - 525 1.1e-11 44.2 80.5 5 17 8.9 8.9e+03 -3.4 0.1 5 10 181 186 181 190 0.78 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF678-201 - 525 1.1e-11 44.2 80.5 6 17 0.02 20 5.1 0.0 7 26 211 230 208 231 0.90 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF678-201 - 525 1.1e-11 44.2 80.5 7 17 2.9 2.9e+03 -1.9 0.6 5 14 237 246 236 258 0.66 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF678-201 - 525 1.1e-11 44.2 80.5 8 17 0.0016 1.6 8.6 0.3 5 26 265 286 262 287 0.94 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF678-201 - 525 1.1e-11 44.2 80.5 9 17 6.1e-06 0.0061 16.3 0.1 5 26 293 314 290 315 0.94 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF678-201 - 525 1.1e-11 44.2 80.5 10 17 0.025 25 4.7 1.4 5 26 321 342 318 343 0.80 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF678-201 - 525 1.1e-11 44.2 80.5 11 17 0.00042 0.42 10.4 0.1 5 26 349 370 346 371 0.90 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF678-201 - 525 1.1e-11 44.2 80.5 12 17 0.00042 0.42 10.4 0.2 5 26 377 398 374 399 0.94 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF678-201 - 525 1.1e-11 44.2 80.5 13 17 0.43 4.3e+02 0.8 0.8 5 14 405 414 404 426 0.80 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF678-201 - 525 1.1e-11 44.2 80.5 14 17 0.0015 1.4 8.7 0.2 5 26 433 454 430 455 0.92 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF678-201 - 525 1.1e-11 44.2 80.5 15 17 0.00018 0.18 11.6 0.0 5 26 461 482 457 483 0.92 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF678-201 - 525 1.1e-11 44.2 80.5 16 17 0.31 3.1e+02 1.2 0.4 5 14 489 498 487 503 0.84 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF678-201 - 525 1.1e-11 44.2 80.5 17 17 3 3e+03 -1.9 0.7 6 11 518 523 517 524 0.85 zinc-finger C2H2-type zf_UBZ PF18439.1 32 ZNF678-201 - 525 5.7e-11 41.8 85.1 1 16 0.14 1.3e+02 2.2 0.1 3 20 97 115 95 116 0.80 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF678-201 - 525 5.7e-11 41.8 85.1 2 16 0.0081 8.1 6.1 0.7 3 12 125 134 123 143 0.89 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF678-201 - 525 5.7e-11 41.8 85.1 3 16 0.00074 0.73 9.5 0.1 3 20 153 171 151 172 0.84 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF678-201 - 525 5.7e-11 41.8 85.1 4 16 0.00041 0.41 10.3 0.1 3 20 181 199 179 200 0.92 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF678-201 - 525 5.7e-11 41.8 85.1 5 16 0.0011 1.1 8.9 0.2 3 20 209 227 207 228 0.84 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF678-201 - 525 5.7e-11 41.8 85.1 6 16 0.26 2.6e+02 1.3 0.9 3 20 237 255 235 256 0.79 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF678-201 - 525 5.7e-11 41.8 85.1 7 16 0.032 32 4.2 0.8 3 13 265 275 263 280 0.86 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF678-201 - 525 5.7e-11 41.8 85.1 8 16 0.0034 3.4 7.4 0.1 3 15 293 305 291 312 0.78 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF678-201 - 525 5.7e-11 41.8 85.1 9 16 0.0053 5.3 6.7 1.1 3 13 321 331 319 340 0.84 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF678-201 - 525 5.7e-11 41.8 85.1 10 16 0.0029 2.9 7.5 0.2 3 20 349 367 347 368 0.84 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF678-201 - 525 5.7e-11 41.8 85.1 11 16 0.0037 3.7 7.2 0.1 3 20 377 395 375 396 0.84 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF678-201 - 525 5.7e-11 41.8 85.1 12 16 0.006 6 6.5 1.7 3 14 405 416 403 424 0.77 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF678-201 - 525 5.7e-11 41.8 85.1 13 16 0.0074 7.4 6.3 0.1 3 15 433 445 431 451 0.83 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF678-201 - 525 5.7e-11 41.8 85.1 14 16 0.0031 3.1 7.5 0.2 3 15 461 473 459 480 0.78 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF678-201 - 525 5.7e-11 41.8 85.1 15 16 0.015 15 5.3 0.2 2 13 488 499 487 504 0.81 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF678-201 - 525 5.7e-11 41.8 85.1 16 16 1.6 1.6e+03 -1.2 0.4 4 10 518 524 516 525 0.83 Ubiquitin-Binding Zinc Finger XPA_N PF01286.18 32 ZNF678-201 - 525 1.7e-07 31.2 91.5 1 16 0.068 67 3.6 0.1 4 11 99 106 98 114 0.90 XPA protein N-terminal XPA_N PF01286.18 32 ZNF678-201 - 525 1.7e-07 31.2 91.5 2 16 0.04 40 4.4 1.4 3 11 126 134 124 137 0.87 XPA protein N-terminal XPA_N PF01286.18 32 ZNF678-201 - 525 1.7e-07 31.2 91.5 3 16 0.012 12 6.0 0.0 3 11 154 162 152 170 0.89 XPA protein N-terminal XPA_N PF01286.18 32 ZNF678-201 - 525 1.7e-07 31.2 91.5 4 16 0.025 25 5.0 0.1 3 11 182 190 180 195 0.90 XPA protein N-terminal XPA_N PF01286.18 32 ZNF678-201 - 525 1.7e-07 31.2 91.5 5 16 0.0095 9.5 6.4 0.2 4 12 211 219 209 224 0.92 XPA protein N-terminal XPA_N PF01286.18 32 ZNF678-201 - 525 1.7e-07 31.2 91.5 6 16 0.63 6.3e+02 0.5 2.6 3 12 238 247 236 249 0.88 XPA protein N-terminal XPA_N PF01286.18 32 ZNF678-201 - 525 1.7e-07 31.2 91.5 7 16 0.13 1.3e+02 2.7 1.0 3 11 266 274 264 280 0.86 XPA protein N-terminal XPA_N PF01286.18 32 ZNF678-201 - 525 1.7e-07 31.2 91.5 8 16 0.0031 3.1 7.9 0.3 3 12 294 303 292 304 0.88 XPA protein N-terminal XPA_N PF01286.18 32 ZNF678-201 - 525 1.7e-07 31.2 91.5 9 16 0.0089 8.8 6.5 0.8 3 12 322 331 320 338 0.89 XPA protein N-terminal XPA_N PF01286.18 32 ZNF678-201 - 525 1.7e-07 31.2 91.5 10 16 0.007 7 6.8 0.2 3 12 350 359 348 364 0.90 XPA protein N-terminal XPA_N PF01286.18 32 ZNF678-201 - 525 1.7e-07 31.2 91.5 11 16 0.0083 8.3 6.6 0.4 3 12 378 387 376 390 0.89 XPA protein N-terminal XPA_N PF01286.18 32 ZNF678-201 - 525 1.7e-07 31.2 91.5 12 16 0.015 15 5.8 0.9 3 12 406 415 404 422 0.87 XPA protein N-terminal XPA_N PF01286.18 32 ZNF678-201 - 525 1.7e-07 31.2 91.5 13 16 0.0011 1.1 9.4 0.2 3 14 434 445 432 451 0.83 XPA protein N-terminal XPA_N PF01286.18 32 ZNF678-201 - 525 1.7e-07 31.2 91.5 14 16 0.0039 3.9 7.6 0.4 3 12 462 471 460 474 0.89 XPA protein N-terminal XPA_N PF01286.18 32 ZNF678-201 - 525 1.7e-07 31.2 91.5 15 16 0.0023 2.3 8.3 0.2 3 14 490 501 488 508 0.86 XPA protein N-terminal XPA_N PF01286.18 32 ZNF678-201 - 525 1.7e-07 31.2 91.5 16 16 0.42 4.2e+02 1.1 0.6 2 9 517 524 516 525 0.85 XPA protein N-terminal MRP-S23 PF10484.9 128 ZNF678-201 - 525 9.1e-07 29.2 0.0 1 9 0.0032 3.2 8.0 0.0 5 34 127 156 125 156 0.91 Mitochondrial ribosomal protein S23 MRP-S23 PF10484.9 128 ZNF678-201 - 525 9.1e-07 29.2 0.0 2 9 0.91 9.1e+02 0.1 0.0 7 34 157 184 153 190 0.89 Mitochondrial ribosomal protein S23 MRP-S23 PF10484.9 128 ZNF678-201 - 525 9.1e-07 29.2 0.0 3 9 0.58 5.8e+02 0.7 0.0 6 31 212 237 211 246 0.90 Mitochondrial ribosomal protein S23 MRP-S23 PF10484.9 128 ZNF678-201 - 525 9.1e-07 29.2 0.0 4 9 0.15 1.5e+02 2.6 0.0 5 31 267 293 264 296 0.91 Mitochondrial ribosomal protein S23 MRP-S23 PF10484.9 128 ZNF678-201 - 525 9.1e-07 29.2 0.0 5 9 0.51 5.1e+02 0.9 0.0 5 30 295 320 293 324 0.91 Mitochondrial ribosomal protein S23 MRP-S23 PF10484.9 128 ZNF678-201 - 525 9.1e-07 29.2 0.0 6 9 0.83 8.3e+02 0.2 0.0 6 31 324 349 322 353 0.90 Mitochondrial ribosomal protein S23 MRP-S23 PF10484.9 128 ZNF678-201 - 525 9.1e-07 29.2 0.0 7 9 0.61 6e+02 0.7 0.0 5 31 351 377 349 386 0.90 Mitochondrial ribosomal protein S23 MRP-S23 PF10484.9 128 ZNF678-201 - 525 9.1e-07 29.2 0.0 8 9 0.26 2.6e+02 1.8 0.0 5 31 407 433 405 442 0.92 Mitochondrial ribosomal protein S23 MRP-S23 PF10484.9 128 ZNF678-201 - 525 9.1e-07 29.2 0.0 9 9 7 7e+03 -2.8 0.0 8 31 438 461 434 468 0.79 Mitochondrial ribosomal protein S23 # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF678-201.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF678-201.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF678-201.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF678-201.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF678-201.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:12:13 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZNF678-202 - 482 7.5e-129 415.0 131.1 1 16 0.0054 4.8 7.8 0.6 10 24 49 63 45 64 0.89 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF678-202 - 482 7.5e-129 415.0 131.1 2 16 2.8e-11 2.5e-08 34.0 1.4 2 25 69 92 69 93 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF678-202 - 482 7.5e-129 415.0 131.1 3 16 2.4e-12 2.1e-09 37.4 1.2 1 25 96 120 96 120 0.97 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF678-202 - 482 7.5e-129 415.0 131.1 4 16 2.5e-11 2.3e-08 34.1 1.0 2 25 125 148 124 148 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF678-202 - 482 7.5e-129 415.0 131.1 5 16 2e-10 1.8e-07 31.3 0.6 2 25 153 176 152 177 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF678-202 - 482 7.5e-129 415.0 131.1 6 16 5.1e-11 4.5e-08 33.2 5.0 1 25 180 204 180 205 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF678-202 - 482 7.5e-129 415.0 131.1 7 16 5.3e-11 4.7e-08 33.1 0.5 1 25 208 232 208 233 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF678-202 - 482 7.5e-129 415.0 131.1 8 16 6.8e-13 6.1e-10 39.1 2.2 1 25 236 260 236 261 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF678-202 - 482 7.5e-129 415.0 131.1 9 16 3.3e-13 3e-10 40.0 1.2 1 25 264 288 264 289 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF678-202 - 482 7.5e-129 415.0 131.1 10 16 2e-11 1.8e-08 34.4 2.3 1 25 292 316 292 317 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF678-202 - 482 7.5e-129 415.0 131.1 11 16 2.5e-12 2.3e-09 37.3 2.1 1 25 320 344 320 345 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF678-202 - 482 7.5e-129 415.0 131.1 12 16 1.5e-11 1.3e-08 34.8 0.7 1 26 348 373 348 373 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF678-202 - 482 7.5e-129 415.0 131.1 13 16 3.8e-11 3.4e-08 33.6 3.5 1 24 376 399 376 401 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF678-202 - 482 7.5e-129 415.0 131.1 14 16 2.9e-11 2.6e-08 33.9 1.0 2 25 405 428 404 429 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF678-202 - 482 7.5e-129 415.0 131.1 15 16 6.4e-11 5.7e-08 32.8 2.1 1 24 432 455 432 457 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF678-202 - 482 7.5e-129 415.0 131.1 16 16 1.1 9.6e+02 0.5 0.3 10 21 469 480 459 481 0.69 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZNF678-202 - 482 4.2e-70 228.5 142.8 1 17 4.3 3.9e+03 -1.3 0.0 11 20 5 14 2 16 0.77 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF678-202 - 482 4.2e-70 228.5 142.8 2 17 0.031 28 5.4 0.3 1 23 54 76 54 76 0.93 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF678-202 - 482 4.2e-70 228.5 142.8 3 17 1.8e-09 1.6e-06 28.2 3.3 1 23 82 104 82 104 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF678-202 - 482 4.2e-70 228.5 142.8 4 17 2.1e-07 0.00019 21.7 0.3 1 23 110 132 110 132 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF678-202 - 482 4.2e-70 228.5 142.8 5 17 3.2e-07 0.00028 21.1 0.5 1 23 138 160 138 160 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF678-202 - 482 4.2e-70 228.5 142.8 6 17 1.1e-08 9.4e-06 25.8 0.5 1 23 166 188 166 188 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF678-202 - 482 4.2e-70 228.5 142.8 7 17 7.5e-05 0.068 13.7 5.0 1 23 194 216 194 216 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF678-202 - 482 4.2e-70 228.5 142.8 8 17 6.3e-07 0.00056 20.2 4.0 1 23 222 244 222 244 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF678-202 - 482 4.2e-70 228.5 142.8 9 17 2.4e-08 2.1e-05 24.7 0.7 1 23 250 272 250 272 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF678-202 - 482 4.2e-70 228.5 142.8 10 17 4.4e-08 4e-05 23.8 5.4 1 23 278 300 278 300 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF678-202 - 482 4.2e-70 228.5 142.8 11 17 8.2e-09 7.3e-06 26.1 1.6 1 23 306 328 306 328 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF678-202 - 482 4.2e-70 228.5 142.8 12 17 3.8e-08 3.4e-05 24.1 1.9 1 23 334 356 334 356 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF678-202 - 482 4.2e-70 228.5 142.8 13 17 1.3e-08 1.1e-05 25.6 5.2 1 23 362 384 362 384 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF678-202 - 482 4.2e-70 228.5 142.8 14 17 1.2e-06 0.0011 19.3 1.3 1 23 390 412 390 412 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF678-202 - 482 4.2e-70 228.5 142.8 15 17 1e-08 9e-06 25.9 1.1 1 23 418 440 418 440 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF678-202 - 482 4.2e-70 228.5 142.8 16 17 0.0021 1.9 9.1 1.7 1 14 446 459 446 459 0.91 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF678-202 - 482 4.2e-70 228.5 142.8 17 17 7.1 6.4e+03 -2.0 1.4 2 7 475 480 474 480 0.87 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZNF678-202 - 482 1.2e-39 131.5 132.2 1 15 0.00059 0.53 11.3 0.4 1 23 54 76 54 77 0.88 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF678-202 - 482 1.2e-39 131.5 132.2 2 15 4.1e-06 0.0036 18.0 2.6 1 23 82 104 82 105 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF678-202 - 482 1.2e-39 131.5 132.2 3 15 8.6e-05 0.077 13.9 0.5 1 23 110 132 110 133 0.87 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF678-202 - 482 1.2e-39 131.5 132.2 4 15 0.00046 0.41 11.6 0.7 1 23 138 160 138 161 0.87 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF678-202 - 482 1.2e-39 131.5 132.2 5 15 3.4e-05 0.031 15.1 0.5 1 23 166 188 166 189 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF678-202 - 482 1.2e-39 131.5 132.2 6 15 0.00073 0.65 11.0 4.1 1 23 194 216 194 217 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF678-202 - 482 1.2e-39 131.5 132.2 7 15 2e-05 0.017 15.9 3.1 1 23 222 244 222 245 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF678-202 - 482 1.2e-39 131.5 132.2 8 15 1.3e-05 0.012 16.4 0.7 1 23 250 272 250 273 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF678-202 - 482 1.2e-39 131.5 132.2 9 15 8.5e-06 0.0076 17.0 4.5 1 23 278 300 278 301 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF678-202 - 482 1.2e-39 131.5 132.2 10 15 8.3e-06 0.0074 17.0 1.0 1 23 306 328 306 329 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF678-202 - 482 1.2e-39 131.5 132.2 11 15 2.9e-05 0.026 15.3 1.4 1 23 334 356 334 357 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF678-202 - 482 1.2e-39 131.5 132.2 12 15 2.4e-05 0.022 15.6 4.7 1 23 362 384 362 385 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF678-202 - 482 1.2e-39 131.5 132.2 13 15 0.00012 0.11 13.4 1.1 1 23 390 412 390 413 0.85 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF678-202 - 482 1.2e-39 131.5 132.2 14 15 9.8e-06 0.0088 16.8 1.0 1 23 418 440 418 441 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF678-202 - 482 1.2e-39 131.5 132.2 15 15 0.027 24 6.1 0.8 1 14 446 458 446 465 0.81 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF678-202 - 482 2.6e-31 107.0 136.1 1 15 0.35 3.1e+02 1.5 1.1 2 22 54 74 53 78 0.73 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF678-202 - 482 2.6e-31 107.0 136.1 2 15 1.4e-06 0.0013 18.7 2.6 2 24 82 104 82 107 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF678-202 - 482 2.6e-31 107.0 136.1 3 15 1.6e-05 0.015 15.3 0.4 2 24 110 132 110 135 0.88 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF678-202 - 482 2.6e-31 107.0 136.1 4 15 7.6e-06 0.0069 16.4 0.4 2 25 138 161 138 163 0.92 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF678-202 - 482 2.6e-31 107.0 136.1 5 15 1.8e-05 0.016 15.2 0.4 2 24 166 188 166 191 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF678-202 - 482 2.6e-31 107.0 136.1 6 15 3.4e-05 0.031 14.3 4.3 2 24 194 216 194 219 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF678-202 - 482 2.6e-31 107.0 136.1 7 15 0.0098 8.8 6.5 2.4 2 22 222 242 222 246 0.81 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF678-202 - 482 2.6e-31 107.0 136.1 8 15 1.7e-05 0.015 15.3 0.9 2 24 250 272 250 275 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF678-202 - 482 2.6e-31 107.0 136.1 9 15 0.003 2.7 8.1 4.6 2 24 278 300 278 303 0.91 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF678-202 - 482 2.6e-31 107.0 136.1 10 15 1.1e-05 0.0096 15.9 1.1 2 24 306 328 306 331 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF678-202 - 482 2.6e-31 107.0 136.1 11 15 5.5e-07 0.0005 20.0 2.0 2 24 334 356 334 358 0.95 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF678-202 - 482 2.6e-31 107.0 136.1 12 15 0.0015 1.3 9.1 5.2 2 24 362 384 362 387 0.92 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF678-202 - 482 2.6e-31 107.0 136.1 13 15 0.0016 1.5 8.9 0.7 2 11 390 399 390 414 0.88 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF678-202 - 482 2.6e-31 107.0 136.1 14 15 9.2e-06 0.0082 16.1 1.3 2 24 418 440 418 443 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF678-202 - 482 2.6e-31 107.0 136.1 15 15 0.002 1.8 8.6 1.1 1 11 445 455 445 456 0.92 C2H2-type zinc finger Zn-ribbon_8 PF09723.10 40 ZNF678-202 - 482 1.8e-20 72.7 99.6 1 15 0.0026 2.4 8.4 4.1 6 34 54 89 53 93 0.76 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF678-202 - 482 1.8e-20 72.7 99.6 2 15 0.00065 0.58 10.3 7.8 6 34 82 117 80 117 0.89 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF678-202 - 482 1.8e-20 72.7 99.6 3 15 0.0013 1.2 9.3 0.2 6 18 110 122 109 132 0.81 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF678-202 - 482 1.8e-20 72.7 99.6 4 15 2.9e-05 0.026 14.6 2.5 6 36 138 175 137 178 0.82 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF678-202 - 482 1.8e-20 72.7 99.6 5 15 0.0063 5.7 7.2 0.4 6 21 166 181 165 188 0.82 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF678-202 - 482 1.8e-20 72.7 99.6 6 15 0.026 23 5.2 0.9 6 21 194 209 193 216 0.84 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF678-202 - 482 1.8e-20 72.7 99.6 7 15 0.00024 0.22 11.7 8.5 6 35 222 258 221 260 0.88 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF678-202 - 482 1.8e-20 72.7 99.6 8 15 0.00014 0.13 12.4 8.6 6 38 250 289 248 290 0.74 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF678-202 - 482 1.8e-20 72.7 99.6 9 15 0.0031 2.8 8.1 2.1 6 19 278 291 277 300 0.81 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF678-202 - 482 1.8e-20 72.7 99.6 10 15 0.00027 0.24 11.5 0.2 6 21 306 321 305 328 0.84 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF678-202 - 482 1.8e-20 72.7 99.6 11 15 0.00023 0.2 11.8 0.2 6 22 334 350 333 355 0.87 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF678-202 - 482 1.8e-20 72.7 99.6 12 15 0.00076 0.68 10.1 9.0 6 34 362 397 361 401 0.84 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF678-202 - 482 1.8e-20 72.7 99.6 13 15 0.00028 0.25 11.5 6.2 6 34 390 425 388 427 0.86 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF678-202 - 482 1.8e-20 72.7 99.6 14 15 0.00038 0.34 11.1 0.6 6 22 418 434 417 440 0.85 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF678-202 - 482 1.8e-20 72.7 99.6 15 15 5.8e-05 0.052 13.7 2.5 6 34 446 481 445 482 0.83 Zinc ribbon domain zf-C2H2_11 PF16622.5 29 ZNF678-202 - 482 2.8e-12 46.1 80.4 1 17 9 8e+03 -3.3 0.1 19 24 9 14 7 14 0.80 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF678-202 - 482 2.8e-12 46.1 80.4 2 17 4.4e-05 0.039 13.7 0.4 5 26 54 75 51 76 0.89 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF678-202 - 482 2.8e-12 46.1 80.4 3 17 0.035 32 4.4 0.2 5 26 82 103 79 104 0.87 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF678-202 - 482 2.8e-12 46.1 80.4 4 17 0.31 2.7e+02 1.4 0.0 5 14 110 119 107 131 0.83 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF678-202 - 482 2.8e-12 46.1 80.4 5 17 9 8.1e+03 -3.3 0.1 5 10 138 143 138 147 0.78 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF678-202 - 482 2.8e-12 46.1 80.4 6 17 0.02 18 5.2 0.0 7 26 168 187 165 188 0.90 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF678-202 - 482 2.8e-12 46.1 80.4 7 17 2.7 2.5e+03 -1.6 0.6 5 14 194 203 192 215 0.68 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF678-202 - 482 2.8e-12 46.1 80.4 8 17 0.0016 1.4 8.7 0.3 5 26 222 243 219 244 0.94 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF678-202 - 482 2.8e-12 46.1 80.4 9 17 6.2e-06 0.0055 16.4 0.1 5 26 250 271 247 272 0.94 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF678-202 - 482 2.8e-12 46.1 80.4 10 17 0.025 23 4.9 1.4 5 26 278 299 275 300 0.80 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF678-202 - 482 2.8e-12 46.1 80.4 11 17 0.00043 0.38 10.5 0.1 5 26 306 327 303 328 0.90 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF678-202 - 482 2.8e-12 46.1 80.4 12 17 0.00043 0.38 10.5 0.2 5 26 334 355 331 356 0.94 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF678-202 - 482 2.8e-12 46.1 80.4 13 17 0.44 3.9e+02 0.9 0.8 5 14 362 371 361 383 0.80 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF678-202 - 482 2.8e-12 46.1 80.4 14 17 0.0015 1.3 8.8 0.2 5 26 390 411 387 412 0.92 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF678-202 - 482 2.8e-12 46.1 80.4 15 17 0.00018 0.16 11.7 0.0 5 26 418 439 414 440 0.92 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF678-202 - 482 2.8e-12 46.1 80.4 16 17 0.31 2.8e+02 1.4 0.4 5 14 446 455 444 460 0.84 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF678-202 - 482 2.8e-12 46.1 80.4 17 17 3.1 2.8e+03 -1.8 0.7 6 11 475 480 474 481 0.85 zinc-finger C2H2-type zf_UBZ PF18439.1 32 ZNF678-202 - 482 1.3e-11 43.9 85.1 1 16 0.14 1.2e+02 2.4 0.1 3 20 54 72 52 73 0.80 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF678-202 - 482 1.3e-11 43.9 85.1 2 16 0.0082 7.3 6.3 0.7 3 12 82 91 80 100 0.89 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF678-202 - 482 1.3e-11 43.9 85.1 3 16 0.00074 0.67 9.6 0.1 3 20 110 128 108 129 0.84 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF678-202 - 482 1.3e-11 43.9 85.1 4 16 0.00041 0.37 10.4 0.1 3 20 138 156 136 157 0.92 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF678-202 - 482 1.3e-11 43.9 85.1 5 16 0.0011 1 9.0 0.2 3 20 166 184 164 185 0.84 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF678-202 - 482 1.3e-11 43.9 85.1 6 16 0.26 2.3e+02 1.5 0.9 3 20 194 212 192 213 0.79 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF678-202 - 482 1.3e-11 43.9 85.1 7 16 0.033 29 4.4 0.8 3 13 222 232 220 237 0.86 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF678-202 - 482 1.3e-11 43.9 85.1 8 16 0.0034 3.1 7.5 0.1 3 15 250 262 248 269 0.78 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF678-202 - 482 1.3e-11 43.9 85.1 9 16 0.0053 4.8 6.9 1.1 3 13 278 288 276 297 0.84 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF678-202 - 482 1.3e-11 43.9 85.1 10 16 0.003 2.7 7.7 0.2 3 20 306 324 304 325 0.84 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF678-202 - 482 1.3e-11 43.9 85.1 11 16 0.0037 3.3 7.4 0.1 3 20 334 352 332 353 0.84 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF678-202 - 482 1.3e-11 43.9 85.1 12 16 0.0061 5.5 6.7 1.7 3 14 362 373 360 381 0.77 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF678-202 - 482 1.3e-11 43.9 85.1 13 16 0.0075 6.7 6.4 0.1 3 15 390 402 388 408 0.83 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF678-202 - 482 1.3e-11 43.9 85.1 14 16 0.0032 2.8 7.6 0.2 3 15 418 430 416 437 0.78 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF678-202 - 482 1.3e-11 43.9 85.1 15 16 0.015 14 5.4 0.2 2 13 445 456 444 461 0.81 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF678-202 - 482 1.3e-11 43.9 85.1 16 16 1.6 1.4e+03 -1.0 0.4 4 10 475 481 473 482 0.83 Ubiquitin-Binding Zinc Finger XPA_N PF01286.18 32 ZNF678-202 - 482 3.9e-08 33.2 91.5 1 16 0.068 61 3.8 0.1 4 11 56 63 55 71 0.90 XPA protein N-terminal XPA_N PF01286.18 32 ZNF678-202 - 482 3.9e-08 33.2 91.5 2 16 0.041 37 4.5 1.4 3 11 83 91 81 94 0.87 XPA protein N-terminal XPA_N PF01286.18 32 ZNF678-202 - 482 3.9e-08 33.2 91.5 3 16 0.013 11 6.1 0.0 3 11 111 119 109 127 0.89 XPA protein N-terminal XPA_N PF01286.18 32 ZNF678-202 - 482 3.9e-08 33.2 91.5 4 16 0.025 23 5.2 0.1 3 11 139 147 137 152 0.90 XPA protein N-terminal XPA_N PF01286.18 32 ZNF678-202 - 482 3.9e-08 33.2 91.5 5 16 0.0096 8.6 6.5 0.2 4 12 168 176 166 181 0.92 XPA protein N-terminal XPA_N PF01286.18 32 ZNF678-202 - 482 3.9e-08 33.2 91.5 6 16 0.64 5.7e+02 0.7 2.6 3 12 195 204 193 206 0.88 XPA protein N-terminal XPA_N PF01286.18 32 ZNF678-202 - 482 3.9e-08 33.2 91.5 7 16 0.14 1.2e+02 2.8 1.0 3 11 223 231 221 237 0.86 XPA protein N-terminal XPA_N PF01286.18 32 ZNF678-202 - 482 3.9e-08 33.2 91.5 8 16 0.0032 2.8 8.0 0.3 3 12 251 260 249 261 0.88 XPA protein N-terminal XPA_N PF01286.18 32 ZNF678-202 - 482 3.9e-08 33.2 91.5 9 16 0.0089 8 6.6 0.8 3 12 279 288 277 295 0.89 XPA protein N-terminal XPA_N PF01286.18 32 ZNF678-202 - 482 3.9e-08 33.2 91.5 10 16 0.0071 6.4 6.9 0.2 3 12 307 316 305 321 0.90 XPA protein N-terminal XPA_N PF01286.18 32 ZNF678-202 - 482 3.9e-08 33.2 91.5 11 16 0.0084 7.5 6.7 0.4 3 12 335 344 333 347 0.89 XPA protein N-terminal XPA_N PF01286.18 32 ZNF678-202 - 482 3.9e-08 33.2 91.5 12 16 0.015 13 5.9 0.9 3 12 363 372 361 379 0.87 XPA protein N-terminal XPA_N PF01286.18 32 ZNF678-202 - 482 3.9e-08 33.2 91.5 13 16 0.0011 1 9.5 0.2 3 14 391 402 389 408 0.83 XPA protein N-terminal XPA_N PF01286.18 32 ZNF678-202 - 482 3.9e-08 33.2 91.5 14 16 0.004 3.6 7.7 0.4 3 12 419 428 417 431 0.89 XPA protein N-terminal XPA_N PF01286.18 32 ZNF678-202 - 482 3.9e-08 33.2 91.5 15 16 0.0024 2.1 8.4 0.2 3 14 447 458 445 465 0.86 XPA protein N-terminal XPA_N PF01286.18 32 ZNF678-202 - 482 3.9e-08 33.2 91.5 16 16 0.43 3.8e+02 1.2 0.6 2 9 474 481 473 482 0.85 XPA protein N-terminal MRP-S23 PF10484.9 128 ZNF678-202 - 482 4.4e-07 30.2 0.0 1 9 0.0032 2.9 8.2 0.0 5 34 84 113 82 113 0.91 Mitochondrial ribosomal protein S23 MRP-S23 PF10484.9 128 ZNF678-202 - 482 4.4e-07 30.2 0.0 2 9 0.9 8e+02 0.3 0.0 7 34 114 141 110 148 0.89 Mitochondrial ribosomal protein S23 MRP-S23 PF10484.9 128 ZNF678-202 - 482 4.4e-07 30.2 0.0 3 9 0.55 4.9e+02 1.0 0.0 6 31 169 194 167 203 0.90 Mitochondrial ribosomal protein S23 MRP-S23 PF10484.9 128 ZNF678-202 - 482 4.4e-07 30.2 0.0 4 9 0.16 1.4e+02 2.7 0.0 5 31 224 250 221 253 0.91 Mitochondrial ribosomal protein S23 MRP-S23 PF10484.9 128 ZNF678-202 - 482 4.4e-07 30.2 0.0 5 9 0.51 4.6e+02 1.0 0.0 5 30 252 277 250 281 0.91 Mitochondrial ribosomal protein S23 MRP-S23 PF10484.9 128 ZNF678-202 - 482 4.4e-07 30.2 0.0 6 9 0.81 7.3e+02 0.4 0.0 6 31 281 306 278 309 0.90 Mitochondrial ribosomal protein S23 MRP-S23 PF10484.9 128 ZNF678-202 - 482 4.4e-07 30.2 0.0 7 9 0.61 5.4e+02 0.8 0.0 5 31 308 334 306 343 0.90 Mitochondrial ribosomal protein S23 MRP-S23 PF10484.9 128 ZNF678-202 - 482 4.4e-07 30.2 0.0 8 9 0.28 2.6e+02 1.9 0.0 5 31 364 390 362 393 0.91 Mitochondrial ribosomal protein S23 MRP-S23 PF10484.9 128 ZNF678-202 - 482 4.4e-07 30.2 0.0 9 9 6.8 6.1e+03 -2.6 0.0 8 31 395 418 391 427 0.80 Mitochondrial ribosomal protein S23 DUF3741 PF12552.8 45 ZNF678-202 - 482 7.4e-07 29.0 11.7 1 12 0.72 6.4e+02 0.4 0.0 6 22 71 87 68 92 0.89 Protein of unknown function (DUF3741) DUF3741 PF12552.8 45 ZNF678-202 - 482 7.4e-07 29.0 11.7 2 12 2.5 2.2e+03 -1.3 0.0 6 22 99 115 95 119 0.87 Protein of unknown function (DUF3741) DUF3741 PF12552.8 45 ZNF678-202 - 482 7.4e-07 29.0 11.7 3 12 3.2 2.9e+03 -1.7 0.0 5 23 126 144 124 148 0.82 Protein of unknown function (DUF3741) DUF3741 PF12552.8 45 ZNF678-202 - 482 7.4e-07 29.0 11.7 4 12 0.011 9.8 6.2 0.0 6 27 183 204 179 208 0.86 Protein of unknown function (DUF3741) DUF3741 PF12552.8 45 ZNF678-202 - 482 7.4e-07 29.0 11.7 5 12 0.4 3.6e+02 1.2 0.0 6 25 211 230 207 232 0.84 Protein of unknown function (DUF3741) DUF3741 PF12552.8 45 ZNF678-202 - 482 7.4e-07 29.0 11.7 6 12 9.8 8.8e+03 -3.2 0.0 9 22 242 255 240 259 0.83 Protein of unknown function (DUF3741) DUF3741 PF12552.8 45 ZNF678-202 - 482 7.4e-07 29.0 11.7 7 12 0.24 2.1e+02 1.9 0.0 8 22 269 283 265 287 0.92 Protein of unknown function (DUF3741) DUF3741 PF12552.8 45 ZNF678-202 - 482 7.4e-07 29.0 11.7 8 12 0.78 7e+02 0.3 0.0 4 22 293 311 290 312 0.88 Protein of unknown function (DUF3741) DUF3741 PF12552.8 45 ZNF678-202 - 482 7.4e-07 29.0 11.7 9 12 0.014 12 5.9 0.0 6 31 323 348 319 349 0.87 Protein of unknown function (DUF3741) DUF3741 PF12552.8 45 ZNF678-202 - 482 7.4e-07 29.0 11.7 10 12 0.096 86 3.2 0.0 7 22 380 395 375 399 0.87 Protein of unknown function (DUF3741) DUF3741 PF12552.8 45 ZNF678-202 - 482 7.4e-07 29.0 11.7 11 12 0.088 79 3.3 0.0 5 31 406 432 404 434 0.89 Protein of unknown function (DUF3741) DUF3741 PF12552.8 45 ZNF678-202 - 482 7.4e-07 29.0 11.7 12 12 1.8 1.6e+03 -0.8 0.0 7 22 436 451 432 452 0.90 Protein of unknown function (DUF3741) # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF678-202.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF678-202.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF678-202.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF678-202.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF678-202.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:12:14 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF678-203.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF678-203.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF678-203.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF678-203.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF678-203.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:12:14 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- KRAB PF01352.27 42 ZNF678-204 - 89 8.1e-25 86.2 0.1 1 1 1.1e-28 1e-24 85.9 0.1 2 42 44 84 43 84 0.97 KRAB box # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF678-204.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF678-204.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF678-204.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF678-204.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF678-204.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:12:15 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- KRAB PF01352.27 42 ZNF678-205 - 89 8.1e-25 86.2 0.1 1 1 1.1e-28 1e-24 85.9 0.1 2 42 44 84 43 84 0.97 KRAB box # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF678-205.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF678-205.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF678-205.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF678-205.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF678-205.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:12:15 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZNF680-201 - 530 1.9e-93 303.0 97.7 1 14 0.79 5.3e+02 1.3 0.1 10 24 149 163 147 165 0.80 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF680-201 - 530 1.9e-93 303.0 97.7 2 14 3e-05 0.02 15.3 1.7 3 24 170 191 168 191 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF680-201 - 530 1.9e-93 303.0 97.7 3 14 3.4e-08 2.2e-05 24.6 0.9 1 23 196 218 196 220 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF680-201 - 530 1.9e-93 303.0 97.7 4 14 3.4e-10 2.3e-07 30.9 0.3 2 25 225 248 224 249 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF680-201 - 530 1.9e-93 303.0 97.7 5 14 2.3e-08 1.5e-05 25.2 1.3 2 25 253 276 252 276 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF680-201 - 530 1.9e-93 303.0 97.7 6 14 1.6e-10 1.1e-07 32.0 1.2 2 25 281 304 280 304 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF680-201 - 530 1.9e-93 303.0 97.7 7 14 8.1e-11 5.4e-08 32.9 1.0 2 25 309 332 308 333 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF680-201 - 530 1.9e-93 303.0 97.7 8 14 2.9e-12 1.9e-09 37.5 1.7 1 25 336 360 336 361 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF680-201 - 530 1.9e-93 303.0 97.7 9 14 2.2e-11 1.5e-08 34.7 0.7 1 24 364 387 364 389 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF680-201 - 530 1.9e-93 303.0 97.7 10 14 6.6e-13 4.4e-10 39.5 0.5 1 25 392 416 392 416 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF680-201 - 530 1.9e-93 303.0 97.7 11 14 3e-09 2e-06 27.9 1.3 1 25 420 444 420 444 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF680-201 - 530 1.9e-93 303.0 97.7 12 14 3.3e-07 0.00022 21.5 0.2 2 24 449 471 448 472 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF680-201 - 530 1.9e-93 303.0 97.7 13 14 1.5e-08 9.8e-06 25.8 0.9 2 25 477 500 476 501 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF680-201 - 530 1.9e-93 303.0 97.7 14 14 3e-06 0.002 18.5 1.2 1 26 504 529 504 529 0.92 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZNF680-201 - 530 4.4e-59 193.8 82.5 1 12 4.3e-08 2.9e-05 24.3 4.9 1 23 182 204 182 204 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF680-201 - 530 4.4e-59 193.8 82.5 2 12 0.0011 0.71 10.4 0.1 1 23 210 232 210 232 0.92 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF680-201 - 530 4.4e-59 193.8 82.5 3 12 1.8e-08 1.2e-05 25.5 0.6 1 23 238 260 238 260 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF680-201 - 530 4.4e-59 193.8 82.5 4 12 0.00039 0.26 11.8 0.3 1 23 266 288 266 288 0.91 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF680-201 - 530 4.4e-59 193.8 82.5 5 12 0.00022 0.14 12.6 1.9 1 23 294 316 294 316 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF680-201 - 530 4.4e-59 193.8 82.5 6 12 7e-08 4.7e-05 23.6 1.4 1 23 322 344 322 344 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF680-201 - 530 4.4e-59 193.8 82.5 7 12 4.5e-08 3e-05 24.2 0.6 1 23 350 372 350 372 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF680-201 - 530 4.4e-59 193.8 82.5 8 12 5.1e-10 3.4e-07 30.4 0.2 1 23 378 400 378 400 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF680-201 - 530 4.4e-59 193.8 82.5 9 12 7.9e-08 5.2e-05 23.5 1.9 1 23 406 428 406 428 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF680-201 - 530 4.4e-59 193.8 82.5 10 12 1.6e-05 0.01 16.2 0.5 1 23 434 456 434 456 0.95 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF680-201 - 530 4.4e-59 193.8 82.5 11 12 0.00011 0.074 13.5 0.1 1 23 462 484 462 484 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF680-201 - 530 4.4e-59 193.8 82.5 12 12 3.7e-09 2.5e-06 27.6 2.8 1 23 490 512 490 512 0.98 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZNF680-201 - 530 1.3e-35 119.0 79.8 1 12 5.7e-05 0.038 14.8 4.3 1 23 182 204 182 205 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF680-201 - 530 1.3e-35 119.0 79.8 2 12 0.017 11 7.2 0.2 1 23 210 232 210 233 0.83 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF680-201 - 530 1.3e-35 119.0 79.8 3 12 7.2e-06 0.0048 17.6 0.3 1 23 238 260 238 261 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF680-201 - 530 1.3e-35 119.0 79.8 4 12 0.00023 0.15 12.9 0.5 1 23 266 288 266 289 0.84 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF680-201 - 530 1.3e-35 119.0 79.8 5 12 0.0037 2.5 9.2 1.5 1 23 294 316 294 317 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF680-201 - 530 1.3e-35 119.0 79.8 6 12 2.1e-05 0.014 16.2 1.1 1 23 322 344 322 345 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF680-201 - 530 1.3e-35 119.0 79.8 7 12 2.4e-05 0.016 16.0 0.5 1 23 350 372 350 373 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF680-201 - 530 1.3e-35 119.0 79.8 8 12 1.7e-05 0.011 16.5 0.2 1 23 378 400 378 401 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF680-201 - 530 1.3e-35 119.0 79.8 9 12 8.4e-06 0.0056 17.4 1.7 1 23 406 428 406 429 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF680-201 - 530 1.3e-35 119.0 79.8 10 12 0.00023 0.15 13.0 0.4 1 23 434 456 434 457 0.90 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF680-201 - 530 1.3e-35 119.0 79.8 11 12 0.0015 1 10.4 0.1 1 23 462 484 462 485 0.89 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF680-201 - 530 1.3e-35 119.0 79.8 12 12 6.8e-06 0.0045 17.7 2.1 1 23 490 512 490 513 0.96 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF680-201 - 530 1.8e-24 85.2 91.9 1 12 0.00012 0.079 13.0 2.3 1 20 181 200 181 206 0.84 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF680-201 - 530 1.8e-24 85.2 91.9 2 12 0.00011 0.074 13.1 0.3 2 24 210 232 209 235 0.89 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF680-201 - 530 1.8e-24 85.2 91.9 3 12 0.00024 0.16 12.0 0.7 2 24 238 260 238 263 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF680-201 - 530 1.8e-24 85.2 91.9 4 12 0.0058 3.8 7.6 0.8 2 21 266 285 266 289 0.79 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF680-201 - 530 1.8e-24 85.2 91.9 5 12 4.2e-05 0.028 14.4 0.9 2 24 294 316 294 319 0.91 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF680-201 - 530 1.8e-24 85.2 91.9 6 12 5.6e-06 0.0037 17.2 1.5 2 24 322 344 322 347 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF680-201 - 530 1.8e-24 85.2 91.9 7 12 8.2e-06 0.0054 16.7 1.0 2 24 350 372 350 375 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF680-201 - 530 1.8e-24 85.2 91.9 8 12 0.00033 0.22 11.6 0.3 2 24 378 400 377 403 0.92 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF680-201 - 530 1.8e-24 85.2 91.9 9 12 0.00095 0.63 10.1 2.7 2 24 406 428 406 431 0.92 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF680-201 - 530 1.8e-24 85.2 91.9 10 12 0.0053 3.5 7.7 0.8 2 21 434 453 433 456 0.80 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF680-201 - 530 1.8e-24 85.2 91.9 11 12 0.0005 0.33 11.0 0.1 2 12 462 472 461 484 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF680-201 - 530 1.8e-24 85.2 91.9 12 12 0.001 0.69 10.0 2.6 2 24 490 512 490 515 0.93 C2H2-type zinc finger KRAB PF01352.27 42 ZNF680-201 - 530 4.4e-23 80.7 0.1 1 1 1.2e-25 7.7e-23 79.9 0.1 1 42 12 53 12 53 0.98 KRAB box zf-C2H2_11 PF16622.5 29 ZNF680-201 - 530 2.5e-16 59.1 40.3 1 12 0.31 2.1e+02 1.8 4.1 5 26 182 203 180 204 0.89 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF680-201 - 530 2.5e-16 59.1 40.3 2 12 0.039 26 4.7 0.1 2 11 207 216 206 218 0.91 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF680-201 - 530 2.5e-16 59.1 40.3 3 12 0.023 15 5.4 0.0 5 26 238 259 235 260 0.87 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF680-201 - 530 2.5e-16 59.1 40.3 4 12 0.00076 0.5 10.2 0.1 5 26 266 287 262 288 0.90 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF680-201 - 530 2.5e-16 59.1 40.3 5 12 5.7 3.8e+03 -2.2 0.1 6 14 295 303 294 315 0.67 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF680-201 - 530 2.5e-16 59.1 40.3 6 12 0.093 62 3.5 0.0 5 25 322 342 319 344 0.79 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF680-201 - 530 2.5e-16 59.1 40.3 7 12 0.014 9 6.2 0.0 5 26 350 371 347 372 0.89 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF680-201 - 530 2.5e-16 59.1 40.3 8 12 0.00099 0.66 9.8 0.1 3 26 376 399 375 400 0.92 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF680-201 - 530 2.5e-16 59.1 40.3 9 12 0.00023 0.15 11.8 0.3 5 26 406 427 403 428 0.94 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF680-201 - 530 2.5e-16 59.1 40.3 10 12 0.00068 0.45 10.3 0.1 2 24 431 453 430 456 0.83 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF680-201 - 530 2.5e-16 59.1 40.3 11 12 0.02 13 5.6 0.0 3 26 460 483 459 484 0.83 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF680-201 - 530 2.5e-16 59.1 40.3 12 12 0.0045 3 7.7 0.2 5 26 490 511 487 512 0.91 zinc-finger C2H2-type zf_UBZ PF18439.1 32 ZNF680-201 - 530 2.2e-14 52.7 54.3 1 13 8 5.3e+03 -2.9 0.2 11 21 89 99 88 99 0.79 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF680-201 - 530 2.2e-14 52.7 54.3 2 13 0.034 23 4.7 0.9 3 12 182 191 180 200 0.82 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF680-201 - 530 2.2e-14 52.7 54.3 3 13 0.004 2.6 7.7 0.1 1 12 208 219 208 228 0.86 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF680-201 - 530 2.2e-14 52.7 54.3 4 13 0.0043 2.8 7.6 0.2 3 15 238 250 236 257 0.81 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF680-201 - 530 2.2e-14 52.7 54.3 5 13 0.0058 3.9 7.2 0.1 3 15 266 278 264 284 0.84 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF680-201 - 530 2.2e-14 52.7 54.3 6 13 0.019 13 5.5 0.1 3 12 294 303 292 312 0.88 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF680-201 - 530 2.2e-14 52.7 54.3 7 13 0.015 9.8 5.9 0.2 3 15 322 334 320 341 0.77 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF680-201 - 530 2.2e-14 52.7 54.3 8 13 0.0056 3.7 7.2 0.1 3 14 350 361 348 369 0.79 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF680-201 - 530 2.2e-14 52.7 54.3 9 13 8.2e-05 0.054 13.1 0.2 2 20 377 396 376 397 0.92 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF680-201 - 530 2.2e-14 52.7 54.3 10 13 0.015 9.9 5.9 0.2 3 12 406 415 404 417 0.87 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF680-201 - 530 2.2e-14 52.7 54.3 11 13 0.0019 1.3 8.7 0.1 1 13 432 444 432 453 0.80 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF680-201 - 530 2.2e-14 52.7 54.3 12 13 0.014 9.3 5.9 0.0 2 12 461 471 460 480 0.86 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF680-201 - 530 2.2e-14 52.7 54.3 13 13 0.0058 3.8 7.2 0.2 3 15 490 502 488 509 0.81 Ubiquitin-Binding Zinc Finger Zn-ribbon_8 PF09723.10 40 ZNF680-201 - 530 6.9e-12 45.3 80.9 1 13 9.2 6.1e+03 -2.6 0.1 10 22 155 167 154 173 0.72 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF680-201 - 530 6.9e-12 45.3 80.9 2 13 0.065 43 4.3 8.5 6 34 182 217 181 218 0.78 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF680-201 - 530 6.9e-12 45.3 80.9 3 13 0.016 11 6.3 0.6 6 15 210 219 209 230 0.82 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF680-201 - 530 6.9e-12 45.3 80.9 4 13 0.0002 0.14 12.3 6.1 6 34 238 273 237 276 0.85 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF680-201 - 530 6.9e-12 45.3 80.9 5 13 0.0033 2.2 8.5 5.5 6 34 266 301 265 304 0.74 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF680-201 - 530 6.9e-12 45.3 80.9 6 13 0.037 25 5.1 0.5 6 18 294 306 293 316 0.82 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF680-201 - 530 6.9e-12 45.3 80.9 7 13 0.0013 0.86 9.8 0.2 6 21 322 337 321 345 0.82 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF680-201 - 530 6.9e-12 45.3 80.9 8 13 0.00051 0.34 11.1 6.4 6 34 350 385 349 386 0.80 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF680-201 - 530 6.9e-12 45.3 80.9 9 13 0.0014 0.9 9.7 7.1 6 34 378 413 376 416 0.86 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF680-201 - 530 6.9e-12 45.3 80.9 10 13 0.00082 0.54 10.4 7.7 6 34 406 441 404 442 0.88 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF680-201 - 530 6.9e-12 45.3 80.9 11 13 0.00088 0.58 10.3 0.4 6 20 434 448 432 455 0.85 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF680-201 - 530 6.9e-12 45.3 80.9 12 13 1.2e-05 0.0081 16.3 3.4 6 38 462 501 461 503 0.82 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF680-201 - 530 6.9e-12 45.3 80.9 13 13 0.0028 1.9 8.7 0.6 6 18 490 502 489 511 0.82 Zinc ribbon domain XPA_N PF01286.18 32 ZNF680-201 - 530 1.1e-10 41.3 66.3 1 12 0.024 16 5.6 1.4 3 12 183 192 182 200 0.88 XPA protein N-terminal XPA_N PF01286.18 32 ZNF680-201 - 530 1.1e-10 41.3 66.3 2 12 0.13 86 3.3 0.3 3 9 211 217 210 220 0.86 XPA protein N-terminal XPA_N PF01286.18 32 ZNF680-201 - 530 1.1e-10 41.3 66.3 3 12 0.00081 0.54 10.4 0.2 3 14 239 250 237 255 0.91 XPA protein N-terminal XPA_N PF01286.18 32 ZNF680-201 - 530 1.1e-10 41.3 66.3 4 12 0.0061 4.1 7.5 0.3 3 12 267 276 265 284 0.86 XPA protein N-terminal XPA_N PF01286.18 32 ZNF680-201 - 530 1.1e-10 41.3 66.3 5 12 0.015 9.7 6.3 0.4 3 11 295 303 293 304 0.89 XPA protein N-terminal XPA_N PF01286.18 32 ZNF680-201 - 530 1.1e-10 41.3 66.3 6 12 0.017 11 6.2 0.7 3 12 323 332 321 337 0.90 XPA protein N-terminal XPA_N PF01286.18 32 ZNF680-201 - 530 1.1e-10 41.3 66.3 7 12 0.0063 4.2 7.5 0.4 3 12 351 360 349 361 0.88 XPA protein N-terminal XPA_N PF01286.18 32 ZNF680-201 - 530 1.1e-10 41.3 66.3 8 12 0.0012 0.83 9.8 0.3 3 14 379 390 378 395 0.92 XPA protein N-terminal XPA_N PF01286.18 32 ZNF680-201 - 530 1.1e-10 41.3 66.3 9 12 0.014 9.3 6.4 1.3 3 12 407 416 405 419 0.89 XPA protein N-terminal XPA_N PF01286.18 32 ZNF680-201 - 530 1.1e-10 41.3 66.3 10 12 0.011 7.1 6.8 0.2 3 12 435 444 434 450 0.91 XPA protein N-terminal XPA_N PF01286.18 32 ZNF680-201 - 530 1.1e-10 41.3 66.3 11 12 0.15 1e+02 3.1 0.2 3 11 463 471 462 472 0.84 XPA protein N-terminal XPA_N PF01286.18 32 ZNF680-201 - 530 1.1e-10 41.3 66.3 12 12 0.0011 0.75 9.9 0.1 3 14 491 502 489 508 0.86 XPA protein N-terminal zf-C2H2_8 PF15909.5 98 ZNF680-201 - 530 1.3e-10 41.4 50.3 1 6 0.0001 0.067 13.5 5.2 28 86 173 229 156 236 0.78 C2H2-type zinc ribbon zf-C2H2_8 PF15909.5 98 ZNF680-201 - 530 1.3e-10 41.4 50.3 2 6 7.8e-05 0.052 13.9 1.2 36 86 238 285 229 293 0.84 C2H2-type zinc ribbon zf-C2H2_8 PF15909.5 98 ZNF680-201 - 530 1.3e-10 41.4 50.3 3 6 0.00044 0.29 11.4 1.9 37 88 295 343 288 349 0.85 C2H2-type zinc ribbon zf-C2H2_8 PF15909.5 98 ZNF680-201 - 530 1.3e-10 41.4 50.3 4 6 0.00024 0.16 12.3 1.5 37 88 351 399 344 405 0.84 C2H2-type zinc ribbon zf-C2H2_8 PF15909.5 98 ZNF680-201 - 530 1.3e-10 41.4 50.3 5 6 0.00084 0.56 10.5 2.5 38 86 408 453 401 463 0.83 C2H2-type zinc ribbon zf-C2H2_8 PF15909.5 98 ZNF680-201 - 530 1.3e-10 41.4 50.3 6 6 0.0054 3.6 7.9 2.7 33 88 459 511 441 522 0.74 C2H2-type zinc ribbon zf-trcl PF13451.6 48 ZNF680-201 - 530 3.8e-07 29.9 59.6 1 10 0.033 22 5.1 1.5 3 14 180 191 179 195 0.90 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF680-201 - 530 3.8e-07 29.9 59.6 2 10 0.15 1e+02 2.9 3.9 5 43 210 247 206 252 0.61 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF680-201 - 530 3.8e-07 29.9 59.6 3 10 0.017 11 5.9 0.2 2 14 263 275 262 279 0.86 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF680-201 - 530 3.8e-07 29.9 59.6 4 10 0.00057 0.38 10.7 0.3 2 18 291 307 290 309 0.94 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF680-201 - 530 3.8e-07 29.9 59.6 5 10 0.015 9.8 6.2 0.3 3 14 320 331 318 336 0.89 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF680-201 - 530 3.8e-07 29.9 59.6 6 10 0.031 21 5.1 0.1 3 14 348 359 346 364 0.84 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF680-201 - 530 3.8e-07 29.9 59.6 7 10 0.013 8.9 6.3 0.1 3 15 376 388 374 396 0.88 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF680-201 - 530 3.8e-07 29.9 59.6 8 10 0.047 31 4.5 0.2 3 14 404 415 402 416 0.87 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF680-201 - 530 3.8e-07 29.9 59.6 9 10 0.028 19 5.3 0.2 3 15 432 444 430 448 0.84 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF680-201 - 530 3.8e-07 29.9 59.6 10 10 0.006 4 7.4 3.0 3 42 460 498 458 502 0.82 Probable zinc-ribbon domain # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF680-201.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF680-201.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF680-201.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF680-201.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF680-201.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:12:15 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- KRAB PF01352.27 42 ZNF680-202 - 123 5.1e-24 83.7 0.1 1 1 4.3e-28 7.6e-24 83.1 0.1 1 42 12 53 12 53 0.98 KRAB box # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF680-202.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF680-202.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF680-202.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF680-202.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF680-202.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:12:16 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF680-203.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF680-203.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF680-203.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF680-203.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF680-203.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:12:16 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF680-204.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF680-204.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF680-204.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF680-204.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF680-204.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:12:16 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF680-205.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF680-205.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF680-205.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF680-205.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF680-205.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:12:17 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZNF681-201 - 645 2.8e-99 321.5 130.0 1 18 1.1 1.1e+03 0.3 0.1 10 22 137 149 136 153 0.77 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF681-201 - 645 2.8e-99 321.5 130.0 2 18 0.026 26 5.5 0.6 1 18 156 173 156 181 0.85 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF681-201 - 645 2.8e-99 321.5 130.0 3 18 0.00018 0.18 12.3 0.5 1 25 184 208 184 208 0.90 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF681-201 - 645 2.8e-99 321.5 130.0 4 18 1.1e-05 0.011 16.1 1.6 3 25 214 236 213 237 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF681-201 - 645 2.8e-99 321.5 130.0 5 18 1.5 1.5e+03 -0.1 0.1 3 25 242 264 240 265 0.66 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF681-201 - 645 2.8e-99 321.5 130.0 6 18 2.6e-06 0.0026 18.1 0.3 4 25 271 292 264 293 0.73 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF681-201 - 645 2.8e-99 321.5 130.0 7 18 0.001 1 9.9 0.2 2 25 297 320 296 321 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF681-201 - 645 2.8e-99 321.5 130.0 8 18 5e-12 5e-09 36.2 1.5 1 25 324 348 324 349 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF681-201 - 645 2.8e-99 321.5 130.0 9 18 2.5e-11 2.5e-08 34.0 1.4 1 25 352 376 352 377 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF681-201 - 645 2.8e-99 321.5 130.0 10 18 1.2e-10 1.2e-07 31.9 2.3 1 25 380 404 380 405 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF681-201 - 645 2.8e-99 321.5 130.0 11 18 4.7e-11 4.7e-08 33.1 1.6 1 25 408 432 408 433 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF681-201 - 645 2.8e-99 321.5 130.0 12 18 8.5e-10 8.4e-07 29.1 0.9 1 25 436 460 436 461 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF681-201 - 645 2.8e-99 321.5 130.0 13 18 3.7e-12 3.7e-09 36.6 1.0 1 25 464 488 464 489 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF681-201 - 645 2.8e-99 321.5 130.0 14 18 1.6e-09 1.6e-06 28.2 1.7 2 24 493 515 493 517 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF681-201 - 645 2.8e-99 321.5 130.0 15 18 4.8e-11 4.8e-08 33.1 3.0 2 26 521 545 520 545 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF681-201 - 645 2.8e-99 321.5 130.0 16 18 3.8e-10 3.8e-07 30.2 0.7 1 25 548 572 548 573 0.90 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF681-201 - 645 2.8e-99 321.5 130.0 17 18 5.8e-13 5.8e-10 39.1 2.4 1 25 576 600 576 601 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF681-201 - 645 2.8e-99 321.5 130.0 18 18 0.00049 0.49 10.9 0.3 1 24 604 627 604 629 0.80 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZNF681-201 - 645 3.3e-69 225.7 121.6 1 18 3 3e+03 -1.0 1.1 6 23 144 164 142 164 0.83 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF681-201 - 645 3.3e-69 225.7 121.6 2 18 0.46 4.6e+02 1.6 0.0 7 20 176 189 176 191 0.90 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF681-201 - 645 3.3e-69 225.7 121.6 3 18 2.2e-06 0.0022 18.3 0.6 1 23 198 220 198 220 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF681-201 - 645 3.3e-69 225.7 121.6 4 18 7.8e-05 0.078 13.5 0.3 1 20 226 245 226 247 0.94 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF681-201 - 645 3.3e-69 225.7 121.6 5 18 0.01 10 6.8 0.4 5 23 258 276 256 276 0.90 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF681-201 - 645 3.3e-69 225.7 121.6 6 18 0.0025 2.5 8.8 0.1 5 23 286 304 284 304 0.94 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF681-201 - 645 3.3e-69 225.7 121.6 7 18 3.8e-06 0.0038 17.6 0.7 5 23 314 332 313 332 0.94 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF681-201 - 645 3.3e-69 225.7 121.6 8 18 7.8e-09 7.8e-06 26.1 1.4 1 23 338 360 338 360 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF681-201 - 645 3.3e-69 225.7 121.6 9 18 2.6e-08 2.6e-05 24.4 1.5 1 23 366 388 366 388 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF681-201 - 645 3.3e-69 225.7 121.6 10 18 1.9e-08 1.9e-05 24.9 2.4 1 23 394 416 394 416 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF681-201 - 645 3.3e-69 225.7 121.6 11 18 5.6e-07 0.00056 20.2 0.4 1 23 422 444 422 444 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF681-201 - 645 3.3e-69 225.7 121.6 12 18 1.2e-08 1.2e-05 25.5 0.9 1 23 450 472 450 472 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF681-201 - 645 3.3e-69 225.7 121.6 13 18 5.6e-07 0.00055 20.2 0.5 1 23 478 500 478 500 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF681-201 - 645 3.3e-69 225.7 121.6 14 18 7.6e-08 7.5e-05 23.0 1.1 1 23 506 528 506 528 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF681-201 - 645 3.3e-69 225.7 121.6 15 18 1.8e-07 0.00018 21.8 1.8 1 23 534 556 534 556 0.95 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF681-201 - 645 3.3e-69 225.7 121.6 16 18 1.8e-09 1.8e-06 28.1 2.0 1 23 562 584 562 584 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF681-201 - 645 3.3e-69 225.7 121.6 17 18 3.8e-08 3.8e-05 23.9 0.5 1 23 590 612 590 612 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF681-201 - 645 3.3e-69 225.7 121.6 18 18 1.1 1.1e+03 0.4 0.7 6 21 623 638 621 639 0.89 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZNF681-201 - 645 8.3e-28 94.7 111.4 1 17 9.8 9.8e+03 -2.0 0.4 9 23 150 164 143 165 0.77 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF681-201 - 645 8.3e-28 94.7 111.4 2 17 0.00033 0.33 11.9 0.3 1 23 198 220 198 221 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF681-201 - 645 8.3e-28 94.7 111.4 3 17 0.016 16 6.7 0.3 1 20 226 245 226 247 0.91 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF681-201 - 645 8.3e-28 94.7 111.4 4 17 0.88 8.8e+02 1.2 0.2 5 20 258 273 257 277 0.63 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF681-201 - 645 8.3e-28 94.7 111.4 5 17 0.22 2.2e+02 3.1 0.0 5 23 286 304 285 305 0.89 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF681-201 - 645 8.3e-28 94.7 111.4 6 17 0.0066 6.6 7.9 0.4 5 23 314 332 313 333 0.90 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF681-201 - 645 8.3e-28 94.7 111.4 7 17 1.8e-05 0.017 15.9 1.1 1 23 338 360 338 361 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF681-201 - 645 8.3e-28 94.7 111.4 8 17 7.8e-05 0.078 13.9 1.1 1 23 366 388 366 389 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF681-201 - 645 8.3e-28 94.7 111.4 9 17 4.6e-05 0.045 14.6 1.9 1 23 394 416 394 417 0.91 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF681-201 - 645 8.3e-28 94.7 111.4 10 17 0.0048 4.8 8.3 0.3 1 23 422 444 422 445 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF681-201 - 645 8.3e-28 94.7 111.4 11 17 4e-05 0.04 14.8 0.7 1 23 450 472 450 473 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF681-201 - 645 8.3e-28 94.7 111.4 12 17 8.4e-05 0.083 13.8 0.4 1 23 478 500 478 501 0.86 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF681-201 - 645 8.3e-28 94.7 111.4 13 17 0.00014 0.14 13.1 1.0 1 23 506 528 506 529 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF681-201 - 645 8.3e-28 94.7 111.4 14 17 0.00088 0.87 10.6 1.6 1 23 534 556 534 557 0.87 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF681-201 - 645 8.3e-28 94.7 111.4 15 17 1e-05 0.01 16.6 1.5 1 23 562 584 562 585 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF681-201 - 645 8.3e-28 94.7 111.4 16 17 3.7e-05 0.037 14.9 0.4 1 23 590 612 590 613 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF681-201 - 645 8.3e-28 94.7 111.4 17 17 0.48 4.8e+02 2.1 0.3 6 21 623 638 621 640 0.88 C2H2-type zinc finger KRAB PF01352.27 42 ZNF681-201 - 645 7.5e-22 76.7 0.2 1 1 1.5e-24 1.5e-21 75.8 0.2 1 42 3 44 3 44 0.97 KRAB box XPA_N PF01286.18 32 ZNF681-201 - 645 1.1e-18 66.9 62.9 1 15 0.0026 2.6 8.2 0.2 3 18 199 214 198 217 0.84 XPA protein N-terminal XPA_N PF01286.18 32 ZNF681-201 - 645 1.1e-18 66.9 62.9 2 15 0.42 4.2e+02 1.1 1.8 3 10 227 234 226 237 0.86 XPA protein N-terminal XPA_N PF01286.18 32 ZNF681-201 - 645 1.1e-18 66.9 62.9 3 15 0.85 8.5e+02 0.1 0.1 5 14 257 266 257 271 0.86 XPA protein N-terminal XPA_N PF01286.18 32 ZNF681-201 - 645 1.1e-18 66.9 62.9 4 15 0.12 1.2e+02 2.8 0.1 5 15 285 295 285 301 0.82 XPA protein N-terminal XPA_N PF01286.18 32 ZNF681-201 - 645 1.1e-18 66.9 62.9 5 15 0.15 1.5e+02 2.5 0.0 6 14 314 322 313 328 0.84 XPA protein N-terminal XPA_N PF01286.18 32 ZNF681-201 - 645 1.1e-18 66.9 62.9 6 15 0.00047 0.47 10.6 0.1 3 14 339 350 337 356 0.87 XPA protein N-terminal XPA_N PF01286.18 32 ZNF681-201 - 645 1.1e-18 66.9 62.9 7 15 0.00065 0.64 10.1 0.1 3 16 367 380 365 385 0.82 XPA protein N-terminal XPA_N PF01286.18 32 ZNF681-201 - 645 1.1e-18 66.9 62.9 8 15 0.00068 0.68 10.0 0.1 3 14 395 406 393 412 0.86 XPA protein N-terminal XPA_N PF01286.18 32 ZNF681-201 - 645 1.1e-18 66.9 62.9 9 15 0.21 2.1e+02 2.0 0.2 3 10 423 430 421 437 0.82 XPA protein N-terminal XPA_N PF01286.18 32 ZNF681-201 - 645 1.1e-18 66.9 62.9 10 15 0.0043 4.3 7.5 0.3 3 12 451 460 449 465 0.90 XPA protein N-terminal XPA_N PF01286.18 32 ZNF681-201 - 645 1.1e-18 66.9 62.9 11 15 0.00022 0.22 11.6 0.1 3 19 479 495 477 497 0.85 XPA protein N-terminal XPA_N PF01286.18 32 ZNF681-201 - 645 1.1e-18 66.9 62.9 12 15 0.0024 2.4 8.3 0.3 3 14 507 518 506 524 0.83 XPA protein N-terminal XPA_N PF01286.18 32 ZNF681-201 - 645 1.1e-18 66.9 62.9 13 15 0.00097 0.97 9.5 0.1 3 14 535 546 533 553 0.85 XPA protein N-terminal XPA_N PF01286.18 32 ZNF681-201 - 645 1.1e-18 66.9 62.9 14 15 0.00089 0.88 9.7 0.1 3 14 563 574 561 580 0.86 XPA protein N-terminal XPA_N PF01286.18 32 ZNF681-201 - 645 1.1e-18 66.9 62.9 15 15 0.0041 4.1 7.5 0.2 3 14 591 602 589 605 0.91 XPA protein N-terminal zf_UBZ PF18439.1 32 ZNF681-201 - 645 1.4e-14 53.4 66.2 1 15 4.9 4.8e+03 -2.7 0.1 24 28 80 84 80 86 0.88 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF681-201 - 645 1.4e-14 53.4 66.2 2 15 0.0086 8.6 6.1 0.1 2 13 197 208 196 216 0.84 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF681-201 - 645 1.4e-14 53.4 66.2 3 15 0.0077 7.7 6.2 0.8 2 12 225 235 224 245 0.75 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF681-201 - 645 1.4e-14 53.4 66.2 4 15 2.3 2.3e+03 -1.7 0.0 6 20 285 300 285 301 0.83 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF681-201 - 645 1.4e-14 53.4 66.2 5 15 4.6 4.6e+03 -2.7 0.0 7 15 314 322 313 326 0.78 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF681-201 - 645 1.4e-14 53.4 66.2 6 15 0.0031 3.1 7.5 0.2 3 15 338 350 336 357 0.81 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF681-201 - 645 1.4e-14 53.4 66.2 7 15 0.0044 4.4 7.0 0.3 3 20 366 384 364 385 0.79 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF681-201 - 645 1.4e-14 53.4 66.2 8 15 0.0037 3.7 7.2 0.2 3 15 394 406 392 413 0.81 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF681-201 - 645 1.4e-14 53.4 66.2 9 15 0.00095 0.95 9.1 0.3 3 20 422 440 420 441 0.91 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF681-201 - 645 1.4e-14 53.4 66.2 10 15 0.0024 2.4 7.8 0.1 3 20 450 468 448 469 0.82 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF681-201 - 645 1.4e-14 53.4 66.2 11 15 0.002 2 8.1 0.2 3 17 478 493 476 497 0.78 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF681-201 - 645 1.4e-14 53.4 66.2 12 15 7.2e-05 0.072 12.7 0.2 2 20 505 524 504 525 0.93 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF681-201 - 645 1.4e-14 53.4 66.2 13 15 0.00073 0.72 9.5 0.4 3 20 534 552 532 553 0.82 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF681-201 - 645 1.4e-14 53.4 66.2 14 15 0.0026 2.6 7.7 0.3 3 15 562 574 560 581 0.81 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF681-201 - 645 1.4e-14 53.4 66.2 15 15 0.003 3 7.5 0.1 3 15 590 602 588 609 0.80 Ubiquitin-Binding Zinc Finger Zn-ribbon_8 PF09723.10 40 ZNF681-201 - 645 4.5e-12 45.9 83.8 1 14 6.2e-05 0.062 13.4 3.4 6 35 198 234 197 238 0.87 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF681-201 - 645 4.5e-12 45.9 83.8 2 14 6.6 6.6e+03 -2.7 0.0 6 17 254 265 254 272 0.79 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF681-201 - 645 4.5e-12 45.9 83.8 3 14 1.9 1.9e+03 -0.9 0.5 6 16 282 292 281 321 0.63 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF681-201 - 645 4.5e-12 45.9 83.8 4 14 4 4e+03 -1.9 0.1 9 17 313 321 311 331 0.75 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF681-201 - 645 4.5e-12 45.9 83.8 5 14 5.5e-05 0.055 13.6 5.9 6 37 338 376 336 378 0.88 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF681-201 - 645 4.5e-12 45.9 83.8 6 14 0.0028 2.8 8.1 0.8 6 16 366 376 365 385 0.83 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF681-201 - 645 4.5e-12 45.9 83.8 7 14 9.9e-06 0.0099 16.0 2.9 6 35 394 430 393 434 0.83 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF681-201 - 645 4.5e-12 45.9 83.8 8 14 0.0003 0.3 11.2 6.6 6 34 450 485 449 488 0.78 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF681-201 - 645 4.5e-12 45.9 83.8 9 14 0.0031 3.1 8.0 0.7 6 17 478 489 477 500 0.85 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF681-201 - 645 4.5e-12 45.9 83.8 10 14 0.00051 0.51 10.5 7.0 6 34 506 541 504 545 0.81 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF681-201 - 645 4.5e-12 45.9 83.8 11 14 0.0012 1.2 9.3 6.5 6 35 534 570 532 573 0.83 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF681-201 - 645 4.5e-12 45.9 83.8 12 14 0.00038 0.38 10.9 6.4 6 35 562 598 561 601 0.84 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF681-201 - 645 4.5e-12 45.9 83.8 13 14 0.0047 4.7 7.4 0.6 6 17 590 601 588 610 0.85 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF681-201 - 645 4.5e-12 45.9 83.8 14 14 0.7 7e+02 0.5 0.1 7 22 619 634 618 639 0.77 Zinc ribbon domain zf-C2H2_6 PF13912.6 27 ZNF681-201 - 645 4.5e-09 36.1 112.4 1 16 0.022 21 5.2 0.7 11 24 151 164 142 167 0.83 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF681-201 - 645 4.5e-09 36.1 112.4 2 16 0.41 4.1e+02 1.2 1.0 2 12 198 208 197 208 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF681-201 - 645 4.5e-09 36.1 112.4 3 16 0.001 1 9.4 0.5 2 21 226 245 225 248 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF681-201 - 645 4.5e-09 36.1 112.4 4 16 2.6 2.6e+03 -1.4 0.1 6 12 258 264 257 264 0.88 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF681-201 - 645 4.5e-09 36.1 112.4 5 16 0.51 5e+02 0.8 0.0 6 24 286 304 285 307 0.78 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF681-201 - 645 4.5e-09 36.1 112.4 6 16 0.38 3.8e+02 1.3 0.3 5 21 313 329 313 334 0.74 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF681-201 - 645 4.5e-09 36.1 112.4 7 16 0.0046 4.6 7.3 1.1 2 21 338 357 338 362 0.79 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF681-201 - 645 4.5e-09 36.1 112.4 8 16 0.00083 0.83 9.7 1.1 2 24 366 388 366 391 0.90 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF681-201 - 645 4.5e-09 36.1 112.4 9 16 0.0026 2.6 8.1 2.6 2 24 394 416 394 419 0.88 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF681-201 - 645 4.5e-09 36.1 112.4 10 16 1.3 1.3e+03 -0.5 0.6 2 20 422 440 422 445 0.67 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF681-201 - 645 4.5e-09 36.1 112.4 11 16 1.1e-06 0.0011 18.9 1.0 2 24 450 472 450 475 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF681-201 - 645 4.5e-09 36.1 112.4 12 16 0.00072 0.72 9.9 0.6 2 24 478 500 478 503 0.90 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF681-201 - 645 4.5e-09 36.1 112.4 13 16 0.00072 0.72 9.9 2.1 2 24 506 528 505 531 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF681-201 - 645 4.5e-09 36.1 112.4 14 16 0.028 28 4.9 1.2 2 12 534 544 534 556 0.79 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF681-201 - 645 4.5e-09 36.1 112.4 15 16 0.0088 8.8 6.5 1.7 2 24 562 584 562 587 0.86 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF681-201 - 645 4.5e-09 36.1 112.4 16 16 6.6e-05 0.065 13.2 1.5 2 24 590 612 590 615 0.94 C2H2-type zinc finger # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF681-201.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF681-201.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF681-201.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF681-201.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF681-201.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:12:17 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF681-202.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF681-202.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF681-202.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF681-202.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF681-202.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:12:17 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF681-203.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF681-203.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF681-203.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF681-203.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF681-203.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:12:18 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZNF682-201 - 466 4.6e-81 263.9 115.2 1 12 2.7e-06 0.003 17.9 0.5 8 26 134 152 132 152 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF682-201 - 466 4.6e-81 263.9 115.2 2 12 2.2e-05 0.025 15.0 1.2 1 25 155 179 155 179 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF682-201 - 466 4.6e-81 263.9 115.2 3 12 5.7e-12 6.3e-09 35.9 2.1 2 25 184 207 183 207 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF682-201 - 466 4.6e-81 263.9 115.2 4 12 1.7e-11 1.9e-08 34.3 3.2 1 24 211 234 211 235 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF682-201 - 466 4.6e-81 263.9 115.2 5 12 7.3e-11 8.2e-08 32.3 1.1 3 25 241 263 240 264 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF682-201 - 466 4.6e-81 263.9 115.2 6 12 9.5e-10 1.1e-06 28.8 7.2 1 26 267 292 267 292 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF682-201 - 466 4.6e-81 263.9 115.2 7 12 1.8e-11 2e-08 34.3 0.8 3 26 297 320 296 320 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF682-201 - 466 4.6e-81 263.9 115.2 8 12 2e-09 2.2e-06 27.8 2.1 2 26 324 348 324 348 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF682-201 - 466 4.6e-81 263.9 115.2 9 12 5.7e-12 6.3e-09 35.9 2.1 2 25 352 375 351 375 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF682-201 - 466 4.6e-81 263.9 115.2 10 12 1.5e-11 1.7e-08 34.5 0.7 2 25 380 403 380 404 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF682-201 - 466 4.6e-81 263.9 115.2 11 12 2.1e-09 2.3e-06 27.8 4.4 1 26 407 432 407 432 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF682-201 - 466 4.6e-81 263.9 115.2 12 12 0.0031 3.5 8.2 3.2 1 26 435 460 435 460 0.93 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZNF682-201 - 466 1e-46 154.8 116.6 1 13 0.027 31 5.3 0.2 5 18 117 130 116 130 0.91 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF682-201 - 466 1e-46 154.8 116.6 2 13 5.1e-06 0.0057 17.1 2.2 1 23 141 163 141 163 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF682-201 - 466 1e-46 154.8 116.6 3 13 2.3e-05 0.025 15.0 2.5 2 23 170 191 169 191 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF682-201 - 466 1e-46 154.8 116.6 4 13 1e-06 0.0011 19.3 2.0 1 23 197 219 197 219 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF682-201 - 466 1e-46 154.8 116.6 5 13 0.0018 2 9.0 3.5 1 23 225 247 225 247 0.94 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF682-201 - 466 1e-46 154.8 116.6 6 13 3.7e-08 4.2e-05 23.8 4.2 1 23 253 275 253 275 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF682-201 - 466 1e-46 154.8 116.6 7 13 5.6e-08 6.2e-05 23.2 4.1 1 23 281 303 281 303 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF682-201 - 466 1e-46 154.8 116.6 8 13 7.8e-06 0.0087 16.5 0.2 1 23 309 331 309 331 0.93 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF682-201 - 466 1e-46 154.8 116.6 9 13 2.1e-08 2.4e-05 24.6 3.8 1 23 337 359 337 359 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF682-201 - 466 1e-46 154.8 116.6 10 13 6.4e-05 0.071 13.6 0.2 1 23 365 387 365 387 0.92 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF682-201 - 466 1e-46 154.8 116.6 11 13 5.6e-08 6.3e-05 23.2 4.7 1 23 393 415 393 415 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF682-201 - 466 1e-46 154.8 116.6 12 13 5.2e-08 5.8e-05 23.3 2.5 1 21 421 441 421 442 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF682-201 - 466 1e-46 154.8 116.6 13 13 0.0085 9.5 6.9 2.1 3 17 449 465 448 466 0.90 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZNF682-201 - 466 1.3e-21 75.4 111.5 1 13 3 3.4e+03 -0.6 0.1 6 17 118 129 115 130 0.78 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF682-201 - 466 1.3e-21 75.4 111.5 2 13 5.6e-06 0.0063 17.3 1.9 1 23 141 163 141 164 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF682-201 - 466 1.3e-21 75.4 111.5 3 13 0.004 4.5 8.4 2.6 2 23 170 191 169 192 0.83 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF682-201 - 466 1.3e-21 75.4 111.5 4 13 0.00034 0.38 11.7 2.3 1 23 197 219 197 220 0.88 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF682-201 - 466 1.3e-21 75.4 111.5 5 13 0.0046 5.2 8.2 4.0 1 23 225 247 225 248 0.88 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF682-201 - 466 1.3e-21 75.4 111.5 6 13 0.00019 0.21 12.5 2.7 1 23 253 275 253 276 0.91 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF682-201 - 466 1.3e-21 75.4 111.5 7 13 0.00011 0.13 13.2 3.5 1 23 281 303 281 304 0.82 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF682-201 - 466 1.3e-21 75.4 111.5 8 13 9.9e-05 0.11 13.4 0.2 1 23 309 331 309 332 0.89 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF682-201 - 466 1.3e-21 75.4 111.5 9 13 6.7e-05 0.075 13.9 2.7 1 23 337 359 337 360 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF682-201 - 466 1.3e-21 75.4 111.5 10 13 0.00029 0.33 11.9 0.3 1 23 365 387 365 388 0.87 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF682-201 - 466 1.3e-21 75.4 111.5 11 13 1.9e-05 0.021 15.6 3.7 1 23 393 415 393 416 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF682-201 - 466 1.3e-21 75.4 111.5 12 13 4.4e-05 0.049 14.5 2.4 1 21 421 441 421 443 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF682-201 - 466 1.3e-21 75.4 111.5 13 13 2.1 2.4e+03 -0.1 1.3 3 16 449 464 447 466 0.78 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF682-201 - 466 3.3e-12 46.1 101.7 1 12 6.5 7.3e+03 -2.8 0.1 6 13 117 124 116 129 0.75 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF682-201 - 466 3.3e-12 46.1 101.7 2 12 0.00025 0.28 11.2 1.9 2 24 141 163 140 166 0.86 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF682-201 - 466 3.3e-12 46.1 101.7 3 12 0.00031 0.35 10.9 0.6 3 24 170 191 170 194 0.92 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF682-201 - 466 3.3e-12 46.1 101.7 4 12 9.1e-05 0.1 12.6 2.7 2 24 197 219 197 222 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF682-201 - 466 3.3e-12 46.1 101.7 5 12 0.012 13 5.9 1.5 2 12 225 235 225 235 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF682-201 - 466 3.3e-12 46.1 101.7 6 12 0.17 1.9e+02 2.2 2.3 2 24 253 275 253 277 0.89 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF682-201 - 466 3.3e-12 46.1 101.7 7 12 0.0017 1.9 8.6 2.4 2 12 281 291 281 304 0.87 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF682-201 - 466 3.3e-12 46.1 101.7 8 12 0.00011 0.12 12.4 0.5 2 21 309 328 309 333 0.90 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF682-201 - 466 3.3e-12 46.1 101.7 9 12 4.3e-05 0.048 13.7 2.2 2 24 337 359 337 362 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF682-201 - 466 3.3e-12 46.1 101.7 10 12 0.0014 1.5 8.9 0.3 2 23 365 386 365 390 0.81 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF682-201 - 466 3.3e-12 46.1 101.7 11 12 0.0005 0.57 10.3 3.2 2 24 393 415 393 418 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF682-201 - 466 3.3e-12 46.1 101.7 12 12 0.00013 0.14 12.2 3.4 1 22 420 441 420 442 0.95 C2H2-type zinc finger Zn-ribbon_8 PF09723.10 40 ZNF682-201 - 466 2.4e-11 43.6 71.8 1 9 7.2e-05 0.081 13.1 1.7 6 35 141 177 140 183 0.83 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF682-201 - 466 2.4e-11 43.6 71.8 2 9 0.0004 0.45 10.7 8.0 6 34 197 232 196 235 0.89 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF682-201 - 466 2.4e-11 43.6 71.8 3 9 6.5e-05 0.073 13.2 6.1 6 38 225 264 224 266 0.84 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF682-201 - 466 2.4e-11 43.6 71.8 4 9 0.0045 5 7.3 0.3 6 18 253 265 252 275 0.81 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF682-201 - 466 2.4e-11 43.6 71.8 5 9 0.0012 1.3 9.2 8.3 6 34 281 316 280 318 0.80 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF682-201 - 466 2.4e-11 43.6 71.8 6 9 0.0021 2.4 8.4 0.6 6 16 309 319 308 332 0.84 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF682-201 - 466 2.4e-11 43.6 71.8 7 9 0.0014 1.6 8.9 0.2 6 19 337 350 336 361 0.87 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF682-201 - 466 2.4e-11 43.6 71.8 8 9 1.5e-05 0.017 15.2 4.5 6 38 365 404 363 406 0.89 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF682-201 - 466 2.4e-11 43.6 71.8 9 9 0.024 26 5.0 6.1 6 23 421 438 418 459 0.71 Zinc ribbon domain zf_UBZ PF18439.1 32 ZNF682-201 - 466 2.2e-08 33.5 58.7 1 11 0.019 22 4.8 0.1 3 15 141 153 139 159 0.87 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF682-201 - 466 2.2e-08 33.5 58.7 2 11 0.023 25 4.6 0.5 4 12 170 178 168 183 0.89 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF682-201 - 466 2.2e-08 33.5 58.7 3 11 0.0077 8.6 6.1 0.2 3 12 197 206 195 208 0.87 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF682-201 - 466 2.2e-08 33.5 58.7 4 11 0.0085 9.5 5.9 0.3 3 12 225 234 223 235 0.86 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF682-201 - 466 2.2e-08 33.5 58.7 5 11 0.0046 5.2 6.8 0.2 3 15 253 265 251 272 0.79 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF682-201 - 466 2.2e-08 33.5 58.7 6 11 0.018 20 4.9 0.6 3 12 281 290 279 296 0.87 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF682-201 - 466 2.2e-08 33.5 58.7 7 11 0.00016 0.18 11.4 0.2 3 20 309 327 307 328 0.91 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF682-201 - 466 2.2e-08 33.5 58.7 8 11 0.0081 9 6.0 0.2 3 13 337 347 335 355 0.85 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF682-201 - 466 2.2e-08 33.5 58.7 9 11 0.0014 1.6 8.4 0.1 3 20 365 383 363 384 0.83 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF682-201 - 466 2.2e-08 33.5 58.7 10 11 0.02 22 4.7 1.1 3 12 393 402 391 406 0.88 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF682-201 - 466 2.2e-08 33.5 58.7 11 11 0.0045 5.1 6.8 1.9 2 20 420 439 419 440 0.79 Ubiquitin-Binding Zinc Finger XPA_N PF01286.18 32 ZNF682-201 - 466 6.2e-08 32.5 68.8 1 11 0.12 1.3e+02 2.7 0.4 3 12 142 151 141 153 0.89 XPA protein N-terminal XPA_N PF01286.18 32 ZNF682-201 - 466 6.2e-08 32.5 68.8 2 11 0.0048 5.4 7.2 1.5 3 17 170 185 169 187 0.75 XPA protein N-terminal XPA_N PF01286.18 32 ZNF682-201 - 466 6.2e-08 32.5 68.8 3 11 0.0038 4.3 7.5 0.2 3 11 198 206 196 208 0.90 XPA protein N-terminal XPA_N PF01286.18 32 ZNF682-201 - 466 6.2e-08 32.5 68.8 4 11 0.0024 2.7 8.1 0.2 3 12 226 235 224 236 0.90 XPA protein N-terminal XPA_N PF01286.18 32 ZNF682-201 - 466 6.2e-08 32.5 68.8 5 11 0.03 33 4.6 0.0 3 12 254 263 252 271 0.86 XPA protein N-terminal XPA_N PF01286.18 32 ZNF682-201 - 466 6.2e-08 32.5 68.8 6 11 0.0021 2.4 8.3 0.5 3 18 282 297 280 300 0.83 XPA protein N-terminal XPA_N PF01286.18 32 ZNF682-201 - 466 6.2e-08 32.5 68.8 7 11 0.0003 0.34 11.0 0.1 3 16 310 323 308 329 0.83 XPA protein N-terminal XPA_N PF01286.18 32 ZNF682-201 - 466 6.2e-08 32.5 68.8 8 11 0.014 16 5.7 0.3 3 18 338 354 336 355 0.79 XPA protein N-terminal XPA_N PF01286.18 32 ZNF682-201 - 466 6.2e-08 32.5 68.8 9 11 0.0012 1.3 9.1 0.1 3 14 366 377 364 383 0.83 XPA protein N-terminal XPA_N PF01286.18 32 ZNF682-201 - 466 6.2e-08 32.5 68.8 10 11 0.0044 5 7.3 0.8 3 12 394 403 392 408 0.90 XPA protein N-terminal XPA_N PF01286.18 32 ZNF682-201 - 466 6.2e-08 32.5 68.8 11 11 0.0045 5 7.2 1.2 3 12 422 431 420 436 0.90 XPA protein N-terminal # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF682-201.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF682-201.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF682-201.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF682-201.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF682-201.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:12:18 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZNF682-202 - 466 4.6e-81 263.9 115.2 1 12 2.7e-06 0.003 17.9 0.5 8 26 134 152 132 152 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF682-202 - 466 4.6e-81 263.9 115.2 2 12 2.2e-05 0.025 15.0 1.2 1 25 155 179 155 179 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF682-202 - 466 4.6e-81 263.9 115.2 3 12 5.7e-12 6.3e-09 35.9 2.1 2 25 184 207 183 207 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF682-202 - 466 4.6e-81 263.9 115.2 4 12 1.7e-11 1.9e-08 34.3 3.2 1 24 211 234 211 235 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF682-202 - 466 4.6e-81 263.9 115.2 5 12 7.3e-11 8.2e-08 32.3 1.1 3 25 241 263 240 264 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF682-202 - 466 4.6e-81 263.9 115.2 6 12 9.5e-10 1.1e-06 28.8 7.2 1 26 267 292 267 292 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF682-202 - 466 4.6e-81 263.9 115.2 7 12 1.8e-11 2e-08 34.3 0.8 3 26 297 320 296 320 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF682-202 - 466 4.6e-81 263.9 115.2 8 12 2e-09 2.2e-06 27.8 2.1 2 26 324 348 324 348 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF682-202 - 466 4.6e-81 263.9 115.2 9 12 5.7e-12 6.3e-09 35.9 2.1 2 25 352 375 351 375 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF682-202 - 466 4.6e-81 263.9 115.2 10 12 1.5e-11 1.7e-08 34.5 0.7 2 25 380 403 380 404 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF682-202 - 466 4.6e-81 263.9 115.2 11 12 2.1e-09 2.3e-06 27.8 4.4 1 26 407 432 407 432 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF682-202 - 466 4.6e-81 263.9 115.2 12 12 0.0031 3.5 8.2 3.2 1 26 435 460 435 460 0.93 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZNF682-202 - 466 1e-46 154.8 116.6 1 13 0.027 31 5.3 0.2 5 18 117 130 116 130 0.91 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF682-202 - 466 1e-46 154.8 116.6 2 13 5.1e-06 0.0057 17.1 2.2 1 23 141 163 141 163 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF682-202 - 466 1e-46 154.8 116.6 3 13 2.3e-05 0.025 15.0 2.5 2 23 170 191 169 191 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF682-202 - 466 1e-46 154.8 116.6 4 13 1e-06 0.0011 19.3 2.0 1 23 197 219 197 219 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF682-202 - 466 1e-46 154.8 116.6 5 13 0.0018 2 9.0 3.5 1 23 225 247 225 247 0.94 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF682-202 - 466 1e-46 154.8 116.6 6 13 3.7e-08 4.2e-05 23.8 4.2 1 23 253 275 253 275 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF682-202 - 466 1e-46 154.8 116.6 7 13 5.6e-08 6.2e-05 23.2 4.1 1 23 281 303 281 303 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF682-202 - 466 1e-46 154.8 116.6 8 13 7.8e-06 0.0087 16.5 0.2 1 23 309 331 309 331 0.93 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF682-202 - 466 1e-46 154.8 116.6 9 13 2.1e-08 2.4e-05 24.6 3.8 1 23 337 359 337 359 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF682-202 - 466 1e-46 154.8 116.6 10 13 6.4e-05 0.071 13.6 0.2 1 23 365 387 365 387 0.92 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF682-202 - 466 1e-46 154.8 116.6 11 13 5.6e-08 6.3e-05 23.2 4.7 1 23 393 415 393 415 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF682-202 - 466 1e-46 154.8 116.6 12 13 5.2e-08 5.8e-05 23.3 2.5 1 21 421 441 421 442 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF682-202 - 466 1e-46 154.8 116.6 13 13 0.0085 9.5 6.9 2.1 3 17 449 465 448 466 0.90 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZNF682-202 - 466 1.3e-21 75.4 111.5 1 13 3 3.4e+03 -0.6 0.1 6 17 118 129 115 130 0.78 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF682-202 - 466 1.3e-21 75.4 111.5 2 13 5.6e-06 0.0063 17.3 1.9 1 23 141 163 141 164 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF682-202 - 466 1.3e-21 75.4 111.5 3 13 0.004 4.5 8.4 2.6 2 23 170 191 169 192 0.83 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF682-202 - 466 1.3e-21 75.4 111.5 4 13 0.00034 0.38 11.7 2.3 1 23 197 219 197 220 0.88 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF682-202 - 466 1.3e-21 75.4 111.5 5 13 0.0046 5.2 8.2 4.0 1 23 225 247 225 248 0.88 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF682-202 - 466 1.3e-21 75.4 111.5 6 13 0.00019 0.21 12.5 2.7 1 23 253 275 253 276 0.91 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF682-202 - 466 1.3e-21 75.4 111.5 7 13 0.00011 0.13 13.2 3.5 1 23 281 303 281 304 0.82 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF682-202 - 466 1.3e-21 75.4 111.5 8 13 9.9e-05 0.11 13.4 0.2 1 23 309 331 309 332 0.89 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF682-202 - 466 1.3e-21 75.4 111.5 9 13 6.7e-05 0.075 13.9 2.7 1 23 337 359 337 360 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF682-202 - 466 1.3e-21 75.4 111.5 10 13 0.00029 0.33 11.9 0.3 1 23 365 387 365 388 0.87 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF682-202 - 466 1.3e-21 75.4 111.5 11 13 1.9e-05 0.021 15.6 3.7 1 23 393 415 393 416 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF682-202 - 466 1.3e-21 75.4 111.5 12 13 4.4e-05 0.049 14.5 2.4 1 21 421 441 421 443 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF682-202 - 466 1.3e-21 75.4 111.5 13 13 2.1 2.4e+03 -0.1 1.3 3 16 449 464 447 466 0.78 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF682-202 - 466 3.3e-12 46.1 101.7 1 12 6.5 7.3e+03 -2.8 0.1 6 13 117 124 116 129 0.75 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF682-202 - 466 3.3e-12 46.1 101.7 2 12 0.00025 0.28 11.2 1.9 2 24 141 163 140 166 0.86 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF682-202 - 466 3.3e-12 46.1 101.7 3 12 0.00031 0.35 10.9 0.6 3 24 170 191 170 194 0.92 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF682-202 - 466 3.3e-12 46.1 101.7 4 12 9.1e-05 0.1 12.6 2.7 2 24 197 219 197 222 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF682-202 - 466 3.3e-12 46.1 101.7 5 12 0.012 13 5.9 1.5 2 12 225 235 225 235 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF682-202 - 466 3.3e-12 46.1 101.7 6 12 0.17 1.9e+02 2.2 2.3 2 24 253 275 253 277 0.89 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF682-202 - 466 3.3e-12 46.1 101.7 7 12 0.0017 1.9 8.6 2.4 2 12 281 291 281 304 0.87 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF682-202 - 466 3.3e-12 46.1 101.7 8 12 0.00011 0.12 12.4 0.5 2 21 309 328 309 333 0.90 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF682-202 - 466 3.3e-12 46.1 101.7 9 12 4.3e-05 0.048 13.7 2.2 2 24 337 359 337 362 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF682-202 - 466 3.3e-12 46.1 101.7 10 12 0.0014 1.5 8.9 0.3 2 23 365 386 365 390 0.81 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF682-202 - 466 3.3e-12 46.1 101.7 11 12 0.0005 0.57 10.3 3.2 2 24 393 415 393 418 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF682-202 - 466 3.3e-12 46.1 101.7 12 12 0.00013 0.14 12.2 3.4 1 22 420 441 420 442 0.95 C2H2-type zinc finger Zn-ribbon_8 PF09723.10 40 ZNF682-202 - 466 2.4e-11 43.6 71.8 1 9 7.2e-05 0.081 13.1 1.7 6 35 141 177 140 183 0.83 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF682-202 - 466 2.4e-11 43.6 71.8 2 9 0.0004 0.45 10.7 8.0 6 34 197 232 196 235 0.89 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF682-202 - 466 2.4e-11 43.6 71.8 3 9 6.5e-05 0.073 13.2 6.1 6 38 225 264 224 266 0.84 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF682-202 - 466 2.4e-11 43.6 71.8 4 9 0.0045 5 7.3 0.3 6 18 253 265 252 275 0.81 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF682-202 - 466 2.4e-11 43.6 71.8 5 9 0.0012 1.3 9.2 8.3 6 34 281 316 280 318 0.80 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF682-202 - 466 2.4e-11 43.6 71.8 6 9 0.0021 2.4 8.4 0.6 6 16 309 319 308 332 0.84 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF682-202 - 466 2.4e-11 43.6 71.8 7 9 0.0014 1.6 8.9 0.2 6 19 337 350 336 361 0.87 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF682-202 - 466 2.4e-11 43.6 71.8 8 9 1.5e-05 0.017 15.2 4.5 6 38 365 404 363 406 0.89 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF682-202 - 466 2.4e-11 43.6 71.8 9 9 0.024 26 5.0 6.1 6 23 421 438 418 459 0.71 Zinc ribbon domain zf_UBZ PF18439.1 32 ZNF682-202 - 466 2.2e-08 33.5 58.7 1 11 0.019 22 4.8 0.1 3 15 141 153 139 159 0.87 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF682-202 - 466 2.2e-08 33.5 58.7 2 11 0.023 25 4.6 0.5 4 12 170 178 168 183 0.89 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF682-202 - 466 2.2e-08 33.5 58.7 3 11 0.0077 8.6 6.1 0.2 3 12 197 206 195 208 0.87 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF682-202 - 466 2.2e-08 33.5 58.7 4 11 0.0085 9.5 5.9 0.3 3 12 225 234 223 235 0.86 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF682-202 - 466 2.2e-08 33.5 58.7 5 11 0.0046 5.2 6.8 0.2 3 15 253 265 251 272 0.79 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF682-202 - 466 2.2e-08 33.5 58.7 6 11 0.018 20 4.9 0.6 3 12 281 290 279 296 0.87 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF682-202 - 466 2.2e-08 33.5 58.7 7 11 0.00016 0.18 11.4 0.2 3 20 309 327 307 328 0.91 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF682-202 - 466 2.2e-08 33.5 58.7 8 11 0.0081 9 6.0 0.2 3 13 337 347 335 355 0.85 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF682-202 - 466 2.2e-08 33.5 58.7 9 11 0.0014 1.6 8.4 0.1 3 20 365 383 363 384 0.83 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF682-202 - 466 2.2e-08 33.5 58.7 10 11 0.02 22 4.7 1.1 3 12 393 402 391 406 0.88 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF682-202 - 466 2.2e-08 33.5 58.7 11 11 0.0045 5.1 6.8 1.9 2 20 420 439 419 440 0.79 Ubiquitin-Binding Zinc Finger XPA_N PF01286.18 32 ZNF682-202 - 466 6.2e-08 32.5 68.8 1 11 0.12 1.3e+02 2.7 0.4 3 12 142 151 141 153 0.89 XPA protein N-terminal XPA_N PF01286.18 32 ZNF682-202 - 466 6.2e-08 32.5 68.8 2 11 0.0048 5.4 7.2 1.5 3 17 170 185 169 187 0.75 XPA protein N-terminal XPA_N PF01286.18 32 ZNF682-202 - 466 6.2e-08 32.5 68.8 3 11 0.0038 4.3 7.5 0.2 3 11 198 206 196 208 0.90 XPA protein N-terminal XPA_N PF01286.18 32 ZNF682-202 - 466 6.2e-08 32.5 68.8 4 11 0.0024 2.7 8.1 0.2 3 12 226 235 224 236 0.90 XPA protein N-terminal XPA_N PF01286.18 32 ZNF682-202 - 466 6.2e-08 32.5 68.8 5 11 0.03 33 4.6 0.0 3 12 254 263 252 271 0.86 XPA protein N-terminal XPA_N PF01286.18 32 ZNF682-202 - 466 6.2e-08 32.5 68.8 6 11 0.0021 2.4 8.3 0.5 3 18 282 297 280 300 0.83 XPA protein N-terminal XPA_N PF01286.18 32 ZNF682-202 - 466 6.2e-08 32.5 68.8 7 11 0.0003 0.34 11.0 0.1 3 16 310 323 308 329 0.83 XPA protein N-terminal XPA_N PF01286.18 32 ZNF682-202 - 466 6.2e-08 32.5 68.8 8 11 0.014 16 5.7 0.3 3 18 338 354 336 355 0.79 XPA protein N-terminal XPA_N PF01286.18 32 ZNF682-202 - 466 6.2e-08 32.5 68.8 9 11 0.0012 1.3 9.1 0.1 3 14 366 377 364 383 0.83 XPA protein N-terminal XPA_N PF01286.18 32 ZNF682-202 - 466 6.2e-08 32.5 68.8 10 11 0.0044 5 7.3 0.8 3 12 394 403 392 408 0.90 XPA protein N-terminal XPA_N PF01286.18 32 ZNF682-202 - 466 6.2e-08 32.5 68.8 11 11 0.0045 5 7.2 1.2 3 12 422 431 420 436 0.90 XPA protein N-terminal # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF682-202.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF682-202.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF682-202.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF682-202.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF682-202.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:12:19 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZNF682-203 - 498 1.2e-80 262.6 115.2 1 12 2.7e-06 0.0033 17.8 0.5 8 26 166 184 164 184 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF682-203 - 498 1.2e-80 262.6 115.2 2 12 2.3e-05 0.027 14.9 1.2 1 25 187 211 187 211 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF682-203 - 498 1.2e-80 262.6 115.2 3 12 5.7e-12 6.9e-09 35.7 2.1 2 25 216 239 215 239 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF682-203 - 498 1.2e-80 262.6 115.2 4 12 1.8e-11 2.1e-08 34.2 3.2 1 24 243 266 243 267 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF682-203 - 498 1.2e-80 262.6 115.2 5 12 7.4e-11 8.9e-08 32.2 1.1 3 25 273 295 272 296 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF682-203 - 498 1.2e-80 262.6 115.2 6 12 9.6e-10 1.2e-06 28.7 7.2 1 26 299 324 299 324 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF682-203 - 498 1.2e-80 262.6 115.2 7 12 1.8e-11 2.1e-08 34.2 0.8 3 26 329 352 328 352 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF682-203 - 498 1.2e-80 262.6 115.2 8 12 2e-09 2.4e-06 27.7 2.1 2 26 356 380 356 380 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF682-203 - 498 1.2e-80 262.6 115.2 9 12 5.7e-12 6.9e-09 35.7 2.1 2 25 384 407 383 407 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF682-203 - 498 1.2e-80 262.6 115.2 10 12 1.6e-11 1.9e-08 34.4 0.7 2 25 412 435 412 436 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF682-203 - 498 1.2e-80 262.6 115.2 11 12 2.1e-09 2.5e-06 27.6 4.4 1 26 439 464 439 464 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF682-203 - 498 1.2e-80 262.6 115.2 12 12 0.0032 3.8 8.1 3.2 1 26 467 492 467 492 0.93 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZNF682-203 - 498 2.7e-46 153.5 116.6 1 13 0.028 33 5.2 0.2 5 18 149 162 148 162 0.91 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF682-203 - 498 2.7e-46 153.5 116.6 2 13 5.2e-06 0.0062 16.9 2.2 1 23 173 195 173 195 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF682-203 - 498 2.7e-46 153.5 116.6 3 13 2.3e-05 0.027 14.9 2.5 2 23 202 223 201 223 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF682-203 - 498 2.7e-46 153.5 116.6 4 13 1e-06 0.0012 19.2 2.0 1 23 229 251 229 251 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF682-203 - 498 2.7e-46 153.5 116.6 5 13 0.0018 2.2 8.9 3.5 1 23 257 279 257 279 0.94 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF682-203 - 498 2.7e-46 153.5 116.6 6 13 3.8e-08 4.5e-05 23.7 4.2 1 23 285 307 285 307 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF682-203 - 498 2.7e-46 153.5 116.6 7 13 5.6e-08 6.7e-05 23.1 4.1 1 23 313 335 313 335 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF682-203 - 498 2.7e-46 153.5 116.6 8 13 7.9e-06 0.0095 16.4 0.2 1 23 341 363 341 363 0.93 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF682-203 - 498 2.7e-46 153.5 116.6 9 13 2.1e-08 2.6e-05 24.4 3.8 1 23 369 391 369 391 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF682-203 - 498 2.7e-46 153.5 116.6 10 13 6.5e-05 0.077 13.5 0.2 1 23 397 419 397 419 0.92 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF682-203 - 498 2.7e-46 153.5 116.6 11 13 5.7e-08 6.8e-05 23.1 4.7 1 23 425 447 425 447 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF682-203 - 498 2.7e-46 153.5 116.6 12 13 5.2e-08 6.3e-05 23.2 2.5 1 21 453 473 453 474 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF682-203 - 498 2.7e-46 153.5 116.6 13 13 0.0086 10 6.8 2.1 3 17 481 497 480 498 0.90 Zinc finger, C2H2 type KRAB PF01352.27 42 ZNF682-203 - 498 5.2e-23 80.4 0.2 1 1 8.9e-26 1.1e-22 79.4 0.2 2 42 4 44 3 44 0.98 KRAB box zf-C2H2_4 PF13894.6 24 ZNF682-203 - 498 3.5e-21 74.1 111.5 1 13 3.1 3.7e+03 -0.7 0.1 6 17 150 161 147 162 0.78 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF682-203 - 498 3.5e-21 74.1 111.5 2 13 5.7e-06 0.0068 17.2 1.9 1 23 173 195 173 196 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF682-203 - 498 3.5e-21 74.1 111.5 3 13 0.0041 4.9 8.3 2.6 2 23 202 223 201 224 0.83 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF682-203 - 498 3.5e-21 74.1 111.5 4 13 0.00035 0.41 11.6 2.3 1 23 229 251 229 252 0.88 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF682-203 - 498 3.5e-21 74.1 111.5 5 13 0.0047 5.6 8.1 4.0 1 23 257 279 257 280 0.88 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF682-203 - 498 3.5e-21 74.1 111.5 6 13 0.00019 0.23 12.4 2.7 1 23 285 307 285 308 0.91 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF682-203 - 498 3.5e-21 74.1 111.5 7 13 0.00011 0.14 13.1 3.5 1 23 313 335 313 336 0.82 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF682-203 - 498 3.5e-21 74.1 111.5 8 13 0.0001 0.12 13.3 0.2 1 23 341 363 341 364 0.89 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF682-203 - 498 3.5e-21 74.1 111.5 9 13 6.8e-05 0.081 13.8 2.7 1 23 369 391 369 392 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF682-203 - 498 3.5e-21 74.1 111.5 10 13 0.0003 0.36 11.8 0.3 1 23 397 419 397 420 0.87 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF682-203 - 498 3.5e-21 74.1 111.5 11 13 1.9e-05 0.023 15.5 3.7 1 23 425 447 425 448 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF682-203 - 498 3.5e-21 74.1 111.5 12 13 4.5e-05 0.053 14.4 2.4 1 21 453 473 453 475 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF682-203 - 498 3.5e-21 74.1 111.5 13 13 2.2 2.6e+03 -0.2 1.3 3 16 481 496 479 498 0.78 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF682-203 - 498 5.1e-13 48.7 97.9 1 11 0.00026 0.31 11.1 1.9 2 24 173 195 172 198 0.86 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF682-203 - 498 5.1e-13 48.7 97.9 2 11 0.00031 0.38 10.8 0.6 3 24 202 223 202 226 0.92 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF682-203 - 498 5.1e-13 48.7 97.9 3 11 9.2e-05 0.11 12.5 2.7 2 24 229 251 229 254 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF682-203 - 498 5.1e-13 48.7 97.9 4 11 0.012 14 5.8 1.5 2 12 257 267 257 267 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF682-203 - 498 5.1e-13 48.7 97.9 5 11 0.17 2.1e+02 2.1 2.3 2 24 285 307 285 309 0.89 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF682-203 - 498 5.1e-13 48.7 97.9 6 11 0.0017 2 8.5 2.4 2 12 313 323 313 336 0.87 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF682-203 - 498 5.1e-13 48.7 97.9 7 11 0.00011 0.13 12.3 0.5 2 21 341 360 341 365 0.90 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF682-203 - 498 5.1e-13 48.7 97.9 8 11 4.4e-05 0.052 13.6 2.2 2 24 369 391 369 394 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF682-203 - 498 5.1e-13 48.7 97.9 9 11 0.0014 1.6 8.8 0.3 2 23 397 418 397 422 0.81 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF682-203 - 498 5.1e-13 48.7 97.9 10 11 0.00051 0.61 10.1 3.2 2 24 425 447 425 450 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF682-203 - 498 5.1e-13 48.7 97.9 11 11 0.00013 0.15 12.1 3.4 1 22 452 473 452 474 0.95 C2H2-type zinc finger Zn-ribbon_8 PF09723.10 40 ZNF682-203 - 498 3.2e-11 43.2 71.3 1 9 7.3e-05 0.088 12.9 1.7 6 35 173 209 172 215 0.83 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF682-203 - 498 3.2e-11 43.2 71.3 2 9 0.00043 0.51 10.5 8.1 6 34 229 264 228 267 0.89 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF682-203 - 498 3.2e-11 43.2 71.3 3 9 7e-05 0.083 13.0 6.2 6 38 257 296 256 298 0.84 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF682-203 - 498 3.2e-11 43.2 71.3 4 9 0.0046 5.5 7.2 0.3 6 18 285 297 283 307 0.81 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF682-203 - 498 3.2e-11 43.2 71.3 5 9 0.0012 1.4 9.1 8.3 6 34 313 348 312 350 0.80 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF682-203 - 498 3.2e-11 43.2 71.3 6 9 0.0021 2.5 8.3 0.6 6 16 341 351 340 364 0.84 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF682-203 - 498 3.2e-11 43.2 71.3 7 9 0.0015 1.7 8.8 0.2 6 19 369 382 368 393 0.87 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF682-203 - 498 3.2e-11 43.2 71.3 8 9 1.3e-05 0.015 15.4 4.2 6 38 397 436 396 438 0.89 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF682-203 - 498 3.2e-11 43.2 71.3 9 9 0.021 25 5.1 5.9 6 23 453 470 450 491 0.71 Zinc ribbon domain zf_UBZ PF18439.1 32 ZNF682-203 - 498 5e-08 32.4 58.7 1 11 0.02 23 4.7 0.1 3 15 173 185 171 191 0.87 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF682-203 - 498 5e-08 32.4 58.7 2 11 0.023 27 4.5 0.5 4 12 202 210 200 215 0.89 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF682-203 - 498 5e-08 32.4 58.7 3 11 0.0077 9.2 6.0 0.2 3 12 229 238 227 240 0.87 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF682-203 - 498 5e-08 32.4 58.7 4 11 0.0086 10 5.8 0.3 3 12 257 266 255 267 0.86 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF682-203 - 498 5e-08 32.4 58.7 5 11 0.0047 5.6 6.7 0.2 3 15 285 297 283 304 0.79 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF682-203 - 498 5e-08 32.4 58.7 6 11 0.018 21 4.8 0.6 3 12 313 322 311 328 0.87 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF682-203 - 498 5e-08 32.4 58.7 7 11 0.00016 0.19 11.3 0.2 3 20 341 359 339 360 0.91 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF682-203 - 498 5e-08 32.4 58.7 8 11 0.0081 9.7 5.9 0.2 3 13 369 379 367 387 0.85 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF682-203 - 498 5e-08 32.4 58.7 9 11 0.0014 1.7 8.3 0.1 3 20 397 415 395 416 0.83 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF682-203 - 498 5e-08 32.4 58.7 10 11 0.02 24 4.6 1.1 3 12 425 434 423 438 0.88 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF682-203 - 498 5e-08 32.4 58.7 11 11 0.0046 5.5 6.7 1.9 2 20 452 471 451 472 0.79 Ubiquitin-Binding Zinc Finger XPA_N PF01286.18 32 ZNF682-203 - 498 1.5e-07 31.4 68.8 1 11 0.12 1.4e+02 2.6 0.4 3 12 174 183 173 185 0.89 XPA protein N-terminal XPA_N PF01286.18 32 ZNF682-203 - 498 1.5e-07 31.4 68.8 2 11 0.0048 5.8 7.1 1.5 3 17 202 217 201 219 0.75 XPA protein N-terminal XPA_N PF01286.18 32 ZNF682-203 - 498 1.5e-07 31.4 68.8 3 11 0.0039 4.6 7.4 0.2 3 11 230 238 228 240 0.90 XPA protein N-terminal XPA_N PF01286.18 32 ZNF682-203 - 498 1.5e-07 31.4 68.8 4 11 0.0024 2.9 8.0 0.2 3 12 258 267 256 268 0.90 XPA protein N-terminal XPA_N PF01286.18 32 ZNF682-203 - 498 1.5e-07 31.4 68.8 5 11 0.03 36 4.5 0.0 3 12 286 295 284 303 0.86 XPA protein N-terminal XPA_N PF01286.18 32 ZNF682-203 - 498 1.5e-07 31.4 68.8 6 11 0.0022 2.6 8.2 0.5 3 18 314 329 312 332 0.83 XPA protein N-terminal XPA_N PF01286.18 32 ZNF682-203 - 498 1.5e-07 31.4 68.8 7 11 0.00031 0.37 10.9 0.1 3 16 342 355 340 361 0.83 XPA protein N-terminal XPA_N PF01286.18 32 ZNF682-203 - 498 1.5e-07 31.4 68.8 8 11 0.014 17 5.5 0.3 3 18 370 386 368 387 0.79 XPA protein N-terminal XPA_N PF01286.18 32 ZNF682-203 - 498 1.5e-07 31.4 68.8 9 11 0.0012 1.4 9.0 0.1 3 14 398 409 396 415 0.83 XPA protein N-terminal XPA_N PF01286.18 32 ZNF682-203 - 498 1.5e-07 31.4 68.8 10 11 0.0045 5.3 7.2 0.8 3 12 426 435 424 440 0.90 XPA protein N-terminal XPA_N PF01286.18 32 ZNF682-203 - 498 1.5e-07 31.4 68.8 11 11 0.0045 5.4 7.1 1.2 3 12 454 463 452 468 0.90 XPA protein N-terminal # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF682-203.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF682-203.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF682-203.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF682-203.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF682-203.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:12:19 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- KRAB PF01352.27 42 ZNF682-204 - 103 5.4e-24 83.6 0.2 1 1 4.3e-28 7.7e-24 83.1 0.2 1 42 3 44 3 44 0.98 KRAB box # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF682-204.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF682-204.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF682-204.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF682-204.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF682-204.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:12:19 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF682-205.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF682-205.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF682-205.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF682-205.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF682-205.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:12:20 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- KRAB PF01352.27 42 ZNF682-206 - 76 2.7e-24 84.5 0.2 1 1 2e-28 3.6e-24 84.1 0.2 1 42 3 44 3 44 0.98 KRAB box # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF682-206.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF682-206.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF682-206.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF682-206.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF682-206.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:12:20 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZNF682-207 - 422 1.1e-81 265.8 115.2 1 12 2.7e-06 0.0027 18.1 0.5 8 26 90 108 88 108 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF682-207 - 422 1.1e-81 265.8 115.2 2 12 2.2e-05 0.022 15.2 1.2 1 25 111 135 111 135 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF682-207 - 422 1.1e-81 265.8 115.2 3 12 5.6e-12 5.6e-09 36.0 2.1 2 25 140 163 139 163 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF682-207 - 422 1.1e-81 265.8 115.2 4 12 1.7e-11 1.7e-08 34.5 3.2 1 24 167 190 167 191 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF682-207 - 422 1.1e-81 265.8 115.2 5 12 7.3e-11 7.3e-08 32.5 1.1 3 25 197 219 196 220 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF682-207 - 422 1.1e-81 265.8 115.2 6 12 9.5e-10 9.4e-07 29.0 7.2 1 26 223 248 223 248 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF682-207 - 422 1.1e-81 265.8 115.2 7 12 1.8e-11 1.7e-08 34.5 0.8 3 26 253 276 252 276 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF682-207 - 422 1.1e-81 265.8 115.2 8 12 1.9e-09 1.9e-06 28.0 2.1 2 26 280 304 280 304 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF682-207 - 422 1.1e-81 265.8 115.2 9 12 5.6e-12 5.6e-09 36.0 2.1 2 25 308 331 307 331 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF682-207 - 422 1.1e-81 265.8 115.2 10 12 1.5e-11 1.5e-08 34.7 0.7 2 25 336 359 336 360 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF682-207 - 422 1.1e-81 265.8 115.2 11 12 2.1e-09 2e-06 27.9 4.4 1 26 363 388 363 388 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF682-207 - 422 1.1e-81 265.8 115.2 12 12 0.0031 3.1 8.4 3.2 1 26 391 416 391 416 0.93 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZNF682-207 - 422 2.4e-47 156.8 116.7 1 13 0.027 27 5.5 0.2 5 18 73 86 71 86 0.91 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF682-207 - 422 2.4e-47 156.8 116.7 2 13 5.1e-06 0.005 17.2 2.2 1 23 97 119 97 119 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF682-207 - 422 2.4e-47 156.8 116.7 3 13 2.3e-05 0.022 15.2 2.5 2 23 126 147 125 147 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF682-207 - 422 2.4e-47 156.8 116.7 4 13 9.9e-07 0.00099 19.4 2.0 1 23 153 175 153 175 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF682-207 - 422 2.4e-47 156.8 116.7 5 13 0.0018 1.8 9.2 3.5 1 23 181 203 181 203 0.94 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF682-207 - 422 2.4e-47 156.8 116.7 6 13 3.7e-08 3.7e-05 23.9 4.2 1 23 209 231 209 231 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF682-207 - 422 2.4e-47 156.8 116.7 7 13 5.5e-08 5.5e-05 23.4 4.1 1 23 237 259 237 259 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF682-207 - 422 2.4e-47 156.8 116.7 8 13 7.8e-06 0.0077 16.6 0.2 1 23 265 287 265 287 0.93 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF682-207 - 422 2.4e-47 156.8 116.7 9 13 2.1e-08 2.1e-05 24.7 3.8 1 23 293 315 293 315 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF682-207 - 422 2.4e-47 156.8 116.7 10 13 6.3e-05 0.063 13.8 0.2 1 23 321 343 321 343 0.92 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF682-207 - 422 2.4e-47 156.8 116.7 11 13 5.6e-08 5.5e-05 23.4 4.7 1 23 349 371 349 371 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF682-207 - 422 2.4e-47 156.8 116.7 12 13 5.1e-08 5.1e-05 23.5 2.5 1 21 377 397 377 398 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF682-207 - 422 2.4e-47 156.8 116.7 13 13 0.0085 8.5 7.1 2.1 3 17 405 421 404 422 0.90 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZNF682-207 - 422 3.1e-22 77.3 111.5 1 13 3 3e+03 -0.4 0.1 6 17 74 85 71 86 0.78 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF682-207 - 422 3.1e-22 77.3 111.5 2 13 5.6e-06 0.0056 17.4 1.9 1 23 97 119 97 120 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF682-207 - 422 3.1e-22 77.3 111.5 3 13 0.004 4 8.5 2.6 2 23 126 147 125 148 0.83 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF682-207 - 422 3.1e-22 77.3 111.5 4 13 0.00034 0.34 11.9 2.3 1 23 153 175 153 176 0.88 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF682-207 - 422 3.1e-22 77.3 111.5 5 13 0.0046 4.6 8.4 4.0 1 23 181 203 181 204 0.88 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF682-207 - 422 3.1e-22 77.3 111.5 6 13 0.00019 0.19 12.7 2.7 1 23 209 231 209 232 0.91 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF682-207 - 422 3.1e-22 77.3 111.5 7 13 0.00011 0.11 13.4 3.5 1 23 237 259 237 260 0.82 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF682-207 - 422 3.1e-22 77.3 111.5 8 13 9.9e-05 0.098 13.5 0.2 1 23 265 287 265 288 0.89 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF682-207 - 422 3.1e-22 77.3 111.5 9 13 6.6e-05 0.066 14.1 2.7 1 23 293 315 293 316 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF682-207 - 422 3.1e-22 77.3 111.5 10 13 0.00029 0.29 12.1 0.3 1 23 321 343 321 344 0.87 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF682-207 - 422 3.1e-22 77.3 111.5 11 13 1.9e-05 0.019 15.8 3.7 1 23 349 371 349 372 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF682-207 - 422 3.1e-22 77.3 111.5 12 13 4.4e-05 0.044 14.6 2.4 1 21 377 397 377 399 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF682-207 - 422 3.1e-22 77.3 111.5 13 13 2.1 2.1e+03 0.0 1.3 3 16 405 420 403 422 0.78 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF682-207 - 422 8.4e-13 48.0 101.8 1 12 6.5 6.5e+03 -2.7 0.1 6 13 73 80 72 85 0.75 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF682-207 - 422 8.4e-13 48.0 101.8 2 12 0.00025 0.25 11.4 1.9 2 24 97 119 96 122 0.86 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF682-207 - 422 8.4e-13 48.0 101.8 3 12 0.00031 0.31 11.1 0.6 3 24 126 147 126 150 0.92 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF682-207 - 422 8.4e-13 48.0 101.8 4 12 9.1e-05 0.09 12.8 2.7 2 24 153 175 153 178 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF682-207 - 422 8.4e-13 48.0 101.8 5 12 0.012 12 6.1 1.5 2 12 181 191 181 191 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF682-207 - 422 8.4e-13 48.0 101.8 6 12 0.17 1.7e+02 2.4 2.3 2 24 209 231 209 233 0.89 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF682-207 - 422 8.4e-13 48.0 101.8 7 12 0.0017 1.7 8.7 2.4 2 12 237 247 237 260 0.87 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF682-207 - 422 8.4e-13 48.0 101.8 8 12 0.00011 0.11 12.5 0.5 2 21 265 284 265 289 0.90 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF682-207 - 422 8.4e-13 48.0 101.8 9 12 4.3e-05 0.043 13.8 2.2 2 24 293 315 293 318 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF682-207 - 422 8.4e-13 48.0 101.8 10 12 0.0013 1.3 9.1 0.3 2 24 321 343 321 346 0.81 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF682-207 - 422 8.4e-13 48.0 101.8 11 12 0.0005 0.5 10.4 3.2 2 24 349 371 349 374 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF682-207 - 422 8.4e-13 48.0 101.8 12 12 0.00013 0.13 12.3 3.4 1 22 376 397 376 398 0.95 C2H2-type zinc finger Zn-ribbon_8 PF09723.10 40 ZNF682-207 - 422 9.1e-12 44.9 71.9 1 10 5.4e-05 0.053 13.6 1.3 6 35 97 133 96 140 0.84 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF682-207 - 422 9.1e-12 44.9 71.9 2 10 0.0004 0.4 10.8 8.0 6 34 153 188 152 191 0.89 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF682-207 - 422 9.1e-12 44.9 71.9 3 10 7.1e-05 0.071 13.2 6.3 6 38 181 220 179 222 0.84 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF682-207 - 422 9.1e-12 44.9 71.9 4 10 0.0046 4.5 7.5 0.3 6 18 209 221 208 231 0.81 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF682-207 - 422 9.1e-12 44.9 71.9 5 10 0.0012 1.2 9.3 8.4 6 34 237 272 236 274 0.80 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF682-207 - 422 9.1e-12 44.9 71.9 6 10 0.0022 2.2 8.5 0.7 6 16 265 275 264 288 0.84 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF682-207 - 422 9.1e-12 44.9 71.9 7 10 0.0015 1.5 9.0 0.3 6 19 293 306 292 316 0.87 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF682-207 - 422 9.1e-12 44.9 71.9 8 10 1.7e-05 0.017 15.2 4.6 6 38 321 360 320 362 0.89 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF682-207 - 422 9.1e-12 44.9 71.9 9 10 0.0088 8.8 6.5 0.9 6 17 349 360 348 368 0.84 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF682-207 - 422 9.1e-12 44.9 71.9 10 10 0.027 27 5.0 6.3 6 22 377 393 374 414 0.72 Zinc ribbon domain zf_UBZ PF18439.1 32 ZNF682-207 - 422 6.6e-09 35.2 58.7 1 11 0.019 19 4.9 0.1 3 15 97 109 95 115 0.87 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF682-207 - 422 6.6e-09 35.2 58.7 2 11 0.023 23 4.7 0.5 4 12 126 134 124 139 0.89 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF682-207 - 422 6.6e-09 35.2 58.7 3 11 0.0077 7.7 6.2 0.2 3 12 153 162 151 164 0.87 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF682-207 - 422 6.6e-09 35.2 58.7 4 11 0.0086 8.5 6.1 0.3 3 12 181 190 179 191 0.86 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF682-207 - 422 6.6e-09 35.2 58.7 5 11 0.0046 4.6 6.9 0.2 3 15 209 221 207 228 0.79 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF682-207 - 422 6.6e-09 35.2 58.7 6 11 0.018 18 5.0 0.6 3 12 237 246 235 252 0.87 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF682-207 - 422 6.6e-09 35.2 58.7 7 11 0.00016 0.16 11.6 0.2 3 20 265 283 263 284 0.91 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF682-207 - 422 6.6e-09 35.2 58.7 8 11 0.0081 8.1 6.1 0.2 3 13 293 303 291 311 0.85 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF682-207 - 422 6.6e-09 35.2 58.7 9 11 0.0014 1.4 8.6 0.1 3 20 321 339 319 340 0.83 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF682-207 - 422 6.6e-09 35.2 58.7 10 11 0.02 20 4.9 1.1 3 12 349 358 347 362 0.88 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF682-207 - 422 6.6e-09 35.2 58.7 11 11 0.0046 4.5 6.9 1.9 2 20 376 395 375 396 0.79 Ubiquitin-Binding Zinc Finger XPA_N PF01286.18 32 ZNF682-207 - 422 1.8e-08 34.3 68.8 1 11 0.12 1.2e+02 2.9 0.4 3 12 98 107 97 109 0.89 XPA protein N-terminal XPA_N PF01286.18 32 ZNF682-207 - 422 1.8e-08 34.3 68.8 2 11 0.0048 4.8 7.3 1.5 3 17 126 141 125 143 0.75 XPA protein N-terminal XPA_N PF01286.18 32 ZNF682-207 - 422 1.8e-08 34.3 68.8 3 11 0.0039 3.8 7.6 0.2 3 11 154 162 152 164 0.90 XPA protein N-terminal XPA_N PF01286.18 32 ZNF682-207 - 422 1.8e-08 34.3 68.8 4 11 0.0024 2.4 8.3 0.2 3 12 182 191 180 192 0.90 XPA protein N-terminal XPA_N PF01286.18 32 ZNF682-207 - 422 1.8e-08 34.3 68.8 5 11 0.03 30 4.8 0.0 3 12 210 219 208 227 0.85 XPA protein N-terminal XPA_N PF01286.18 32 ZNF682-207 - 422 1.8e-08 34.3 68.8 6 11 0.0021 2.1 8.4 0.5 3 18 238 253 236 256 0.83 XPA protein N-terminal XPA_N PF01286.18 32 ZNF682-207 - 422 1.8e-08 34.3 68.8 7 11 0.0003 0.3 11.1 0.1 3 16 266 279 264 285 0.83 XPA protein N-terminal XPA_N PF01286.18 32 ZNF682-207 - 422 1.8e-08 34.3 68.8 8 11 0.014 14 5.8 0.3 3 18 294 310 292 311 0.79 XPA protein N-terminal XPA_N PF01286.18 32 ZNF682-207 - 422 1.8e-08 34.3 68.8 9 11 0.0012 1.2 9.3 0.1 3 14 322 333 320 339 0.83 XPA protein N-terminal XPA_N PF01286.18 32 ZNF682-207 - 422 1.8e-08 34.3 68.8 10 11 0.0045 4.4 7.4 0.8 3 12 350 359 348 364 0.90 XPA protein N-terminal XPA_N PF01286.18 32 ZNF682-207 - 422 1.8e-08 34.3 68.8 11 11 0.0045 4.5 7.4 1.2 3 12 378 387 376 392 0.90 XPA protein N-terminal # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF682-207.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF682-207.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF682-207.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF682-207.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF682-207.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:12:21 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- KRAB PF01352.27 42 ZNF682-208 - 82 3.2e-24 84.3 0.2 1 1 2.5e-28 4.4e-24 83.8 0.2 1 42 3 44 3 44 0.98 KRAB box # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF682-208.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF682-208.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF682-208.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF682-208.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF682-208.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:12:21 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZNF682-209 - 504 1.5e-80 262.3 115.2 1 13 9.9 1.3e+04 -3.0 0.4 13 25 149 161 147 162 0.76 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF682-209 - 504 1.5e-80 262.3 115.2 2 13 2.6e-06 0.0033 17.8 0.5 8 26 172 190 170 190 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF682-209 - 504 1.5e-80 262.3 115.2 3 13 2.2e-05 0.028 14.9 1.2 1 25 193 217 193 217 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF682-209 - 504 1.5e-80 262.3 115.2 4 13 5.4e-12 7e-09 35.7 2.1 2 25 222 245 221 245 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF682-209 - 504 1.5e-80 262.3 115.2 5 13 1.7e-11 2.1e-08 34.2 3.2 1 24 249 272 249 273 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF682-209 - 504 1.5e-80 262.3 115.2 6 13 7e-11 9e-08 32.2 1.1 3 25 279 301 278 302 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF682-209 - 504 1.5e-80 262.3 115.2 7 13 9.1e-10 1.2e-06 28.7 7.2 1 26 305 330 305 330 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF682-209 - 504 1.5e-80 262.3 115.2 8 13 1.7e-11 2.2e-08 34.2 0.8 3 26 335 358 334 358 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF682-209 - 504 1.5e-80 262.3 115.2 9 13 1.9e-09 2.4e-06 27.7 2.1 2 26 362 386 362 386 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF682-209 - 504 1.5e-80 262.3 115.2 10 13 5.4e-12 7e-09 35.7 2.1 2 25 390 413 389 413 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF682-209 - 504 1.5e-80 262.3 115.2 11 13 1.5e-11 1.9e-08 34.4 0.7 2 25 418 441 418 442 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF682-209 - 504 1.5e-80 262.3 115.2 12 13 2e-09 2.5e-06 27.6 4.4 1 26 445 470 445 470 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF682-209 - 504 1.5e-80 262.3 115.2 13 13 0.003 3.9 8.1 3.2 1 26 473 498 473 498 0.93 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZNF682-209 - 504 3.2e-46 153.3 116.6 1 13 0.026 33 5.2 0.2 5 18 155 168 154 168 0.91 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF682-209 - 504 3.2e-46 153.3 116.6 2 13 4.9e-06 0.0062 16.9 2.2 1 23 179 201 179 201 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF682-209 - 504 3.2e-46 153.3 116.6 3 13 2.2e-05 0.028 14.9 2.5 2 23 208 229 207 229 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF682-209 - 504 3.2e-46 153.3 116.6 4 13 9.6e-07 0.0012 19.1 2.0 1 23 235 257 235 257 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF682-209 - 504 3.2e-46 153.3 116.6 5 13 0.0017 2.2 8.9 3.5 1 23 263 285 263 285 0.94 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF682-209 - 504 3.2e-46 153.3 116.6 6 13 3.6e-08 4.6e-05 23.6 4.2 1 23 291 313 291 313 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF682-209 - 504 3.2e-46 153.3 116.6 7 13 5.3e-08 6.8e-05 23.1 4.1 1 23 319 341 319 341 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF682-209 - 504 3.2e-46 153.3 116.6 8 13 7.5e-06 0.0096 16.3 0.2 1 23 347 369 347 369 0.93 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF682-209 - 504 3.2e-46 153.3 116.6 9 13 2e-08 2.6e-05 24.4 3.8 1 23 375 397 375 397 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF682-209 - 504 3.2e-46 153.3 116.6 10 13 6.1e-05 0.078 13.5 0.2 1 23 403 425 403 425 0.92 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF682-209 - 504 3.2e-46 153.3 116.6 11 13 5.4e-08 6.9e-05 23.1 4.7 1 23 431 453 431 453 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF682-209 - 504 3.2e-46 153.3 116.6 12 13 5e-08 6.3e-05 23.2 2.5 1 21 459 479 459 480 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF682-209 - 504 3.2e-46 153.3 116.6 13 13 0.0082 10 6.8 2.1 3 17 487 503 486 504 0.90 Zinc finger, C2H2 type KRAB PF01352.27 42 ZNF682-209 - 504 5.3e-23 80.4 0.2 1 1 8.4e-26 1.1e-22 79.4 0.2 2 42 10 50 9 50 0.98 KRAB box zf-C2H2_4 PF13894.6 24 ZNF682-209 - 504 4.1e-21 73.8 111.5 1 13 2.9 3.7e+03 -0.7 0.1 6 17 156 167 153 168 0.78 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF682-209 - 504 4.1e-21 73.8 111.5 2 13 5.4e-06 0.0069 17.1 1.9 1 23 179 201 179 202 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF682-209 - 504 4.1e-21 73.8 111.5 3 13 0.0039 5 8.2 2.6 2 23 208 229 207 230 0.83 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF682-209 - 504 4.1e-21 73.8 111.5 4 13 0.00033 0.42 11.6 2.3 1 23 235 257 235 258 0.88 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF682-209 - 504 4.1e-21 73.8 111.5 5 13 0.0044 5.7 8.1 4.0 1 23 263 285 263 286 0.88 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF682-209 - 504 4.1e-21 73.8 111.5 6 13 0.00018 0.23 12.4 2.7 1 23 291 313 291 314 0.91 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF682-209 - 504 4.1e-21 73.8 111.5 7 13 0.00011 0.14 13.1 3.5 1 23 319 341 319 342 0.82 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF682-209 - 504 4.1e-21 73.8 111.5 8 13 9.6e-05 0.12 13.2 0.2 1 23 347 369 347 370 0.89 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF682-209 - 504 4.1e-21 73.8 111.5 9 13 6.4e-05 0.082 13.8 2.7 1 23 375 397 375 398 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF682-209 - 504 4.1e-21 73.8 111.5 10 13 0.00028 0.36 11.8 0.3 1 23 403 425 403 426 0.87 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF682-209 - 504 4.1e-21 73.8 111.5 11 13 1.8e-05 0.023 15.5 3.7 1 23 431 453 431 454 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF682-209 - 504 4.1e-21 73.8 111.5 12 13 4.2e-05 0.054 14.4 2.4 1 21 459 479 459 481 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF682-209 - 504 4.1e-21 73.8 111.5 13 13 2.1 2.6e+03 -0.2 1.3 3 16 487 502 485 504 0.78 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF682-209 - 504 6e-13 48.4 97.9 1 11 0.00024 0.31 11.1 1.9 2 24 179 201 178 204 0.86 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF682-209 - 504 6e-13 48.4 97.9 2 11 0.0003 0.38 10.8 0.6 3 24 208 229 208 232 0.92 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF682-209 - 504 6e-13 48.4 97.9 3 11 8.7e-05 0.11 12.5 2.7 2 24 235 257 235 260 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF682-209 - 504 6e-13 48.4 97.9 4 11 0.011 14 5.8 1.5 2 12 263 273 263 273 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF682-209 - 504 6e-13 48.4 97.9 5 11 0.16 2.1e+02 2.1 2.3 2 24 291 313 291 315 0.89 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF682-209 - 504 6e-13 48.4 97.9 6 11 0.0016 2.1 8.5 2.4 2 12 319 329 319 342 0.87 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF682-209 - 504 6e-13 48.4 97.9 7 11 0.00011 0.14 12.2 0.5 2 21 347 366 347 371 0.90 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF682-209 - 504 6e-13 48.4 97.9 8 11 4.2e-05 0.053 13.5 2.2 2 24 375 397 375 400 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF682-209 - 504 6e-13 48.4 97.9 9 11 0.0013 1.7 8.8 0.3 2 23 403 424 403 428 0.81 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF682-209 - 504 6e-13 48.4 97.9 10 11 0.00049 0.62 10.1 3.2 2 24 431 453 431 456 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF682-209 - 504 6e-13 48.4 97.9 11 11 0.00012 0.16 12.0 3.4 1 22 458 479 458 480 0.95 C2H2-type zinc finger Zn-ribbon_8 PF09723.10 40 ZNF682-209 - 504 3.7e-11 42.9 71.3 1 9 7e-05 0.089 12.9 1.7 6 35 179 215 178 221 0.83 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF682-209 - 504 3.7e-11 42.9 71.3 2 9 0.00041 0.53 10.5 8.1 6 34 235 270 234 273 0.89 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF682-209 - 504 3.7e-11 42.9 71.3 3 9 7.1e-05 0.091 12.9 6.3 6 38 263 302 262 304 0.84 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF682-209 - 504 3.7e-11 42.9 71.3 4 9 0.0043 5.6 7.2 0.3 6 18 291 303 290 313 0.81 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF682-209 - 504 3.7e-11 42.9 71.3 5 9 0.00072 0.92 9.7 7.9 6 34 319 354 318 358 0.80 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF682-209 - 504 3.7e-11 42.9 71.3 6 9 0.002 2.6 8.2 0.6 6 16 347 357 346 370 0.84 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF682-209 - 504 3.7e-11 42.9 71.3 7 9 0.0014 1.8 8.8 0.2 6 19 375 388 374 399 0.87 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF682-209 - 504 3.7e-11 42.9 71.3 8 9 1.2e-05 0.016 15.3 4.2 6 38 403 442 402 444 0.89 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF682-209 - 504 3.7e-11 42.9 71.3 9 9 0.02 25 5.1 5.9 6 23 459 476 456 497 0.71 Zinc ribbon domain zf_UBZ PF18439.1 32 ZNF682-209 - 504 5.8e-08 32.2 58.7 1 11 0.019 24 4.6 0.1 3 15 179 191 177 197 0.87 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF682-209 - 504 5.8e-08 32.2 58.7 2 11 0.022 28 4.4 0.5 4 12 208 216 206 221 0.89 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF682-209 - 504 5.8e-08 32.2 58.7 3 11 0.0073 9.4 5.9 0.2 3 12 235 244 233 246 0.87 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF682-209 - 504 5.8e-08 32.2 58.7 4 11 0.0081 10 5.8 0.3 3 12 263 272 261 273 0.86 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF682-209 - 504 5.8e-08 32.2 58.7 5 11 0.0044 5.7 6.6 0.2 3 15 291 303 289 310 0.79 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF682-209 - 504 5.8e-08 32.2 58.7 6 11 0.017 22 4.8 0.6 3 12 319 328 317 334 0.87 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF682-209 - 504 5.8e-08 32.2 58.7 7 11 0.00015 0.2 11.3 0.2 3 20 347 365 345 366 0.91 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF682-209 - 504 5.8e-08 32.2 58.7 8 11 0.0077 9.9 5.9 0.2 3 13 375 385 373 393 0.85 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF682-209 - 504 5.8e-08 32.2 58.7 9 11 0.0013 1.7 8.3 0.1 3 20 403 421 401 422 0.83 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF682-209 - 504 5.8e-08 32.2 58.7 10 11 0.019 24 4.6 1.1 3 12 431 440 429 444 0.88 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF682-209 - 504 5.8e-08 32.2 58.7 11 11 0.0044 5.6 6.7 1.9 2 20 458 477 457 478 0.79 Ubiquitin-Binding Zinc Finger XPA_N PF01286.18 32 ZNF682-209 - 504 1.7e-07 31.2 68.8 1 12 9.5 1.2e+04 -3.6 0.5 27 32 128 133 128 133 0.76 XPA protein N-terminal XPA_N PF01286.18 32 ZNF682-209 - 504 1.7e-07 31.2 68.8 2 12 0.11 1.4e+02 2.6 0.4 3 12 180 189 179 191 0.89 XPA protein N-terminal XPA_N PF01286.18 32 ZNF682-209 - 504 1.7e-07 31.2 68.8 3 12 0.0046 5.9 7.0 1.5 3 17 208 223 207 225 0.75 XPA protein N-terminal XPA_N PF01286.18 32 ZNF682-209 - 504 1.7e-07 31.2 68.8 4 12 0.0037 4.7 7.3 0.2 3 11 236 244 234 246 0.90 XPA protein N-terminal XPA_N PF01286.18 32 ZNF682-209 - 504 1.7e-07 31.2 68.8 5 12 0.0023 2.9 8.0 0.2 3 12 264 273 262 274 0.90 XPA protein N-terminal XPA_N PF01286.18 32 ZNF682-209 - 504 1.7e-07 31.2 68.8 6 12 0.029 37 4.5 0.0 3 12 292 301 290 309 0.86 XPA protein N-terminal XPA_N PF01286.18 32 ZNF682-209 - 504 1.7e-07 31.2 68.8 7 12 0.002 2.6 8.2 0.5 3 18 320 335 318 338 0.83 XPA protein N-terminal XPA_N PF01286.18 32 ZNF682-209 - 504 1.7e-07 31.2 68.8 8 12 0.00029 0.37 10.9 0.1 3 16 348 361 346 367 0.83 XPA protein N-terminal XPA_N PF01286.18 32 ZNF682-209 - 504 1.7e-07 31.2 68.8 9 12 0.014 17 5.5 0.3 3 18 376 392 374 393 0.79 XPA protein N-terminal XPA_N PF01286.18 32 ZNF682-209 - 504 1.7e-07 31.2 68.8 10 12 0.0011 1.4 9.0 0.1 3 14 404 415 402 421 0.83 XPA protein N-terminal XPA_N PF01286.18 32 ZNF682-209 - 504 1.7e-07 31.2 68.8 11 12 0.0042 5.4 7.1 0.8 3 12 432 441 430 446 0.90 XPA protein N-terminal XPA_N PF01286.18 32 ZNF682-209 - 504 1.7e-07 31.2 68.8 12 12 0.0043 5.5 7.1 1.2 3 12 460 469 458 474 0.90 XPA protein N-terminal # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF682-209.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF682-209.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF682-209.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF682-209.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF682-209.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:12:21 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF682-210.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF682-210.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF682-210.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF682-210.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF682-210.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:12:22 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF682-211.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF682-211.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF682-211.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF682-211.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF682-211.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:12:22 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZNF682-212 - 422 1.1e-81 265.8 115.2 1 12 2.7e-06 0.0027 18.1 0.5 8 26 90 108 88 108 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF682-212 - 422 1.1e-81 265.8 115.2 2 12 2.2e-05 0.022 15.2 1.2 1 25 111 135 111 135 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF682-212 - 422 1.1e-81 265.8 115.2 3 12 5.6e-12 5.6e-09 36.0 2.1 2 25 140 163 139 163 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF682-212 - 422 1.1e-81 265.8 115.2 4 12 1.7e-11 1.7e-08 34.5 3.2 1 24 167 190 167 191 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF682-212 - 422 1.1e-81 265.8 115.2 5 12 7.3e-11 7.3e-08 32.5 1.1 3 25 197 219 196 220 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF682-212 - 422 1.1e-81 265.8 115.2 6 12 9.5e-10 9.4e-07 29.0 7.2 1 26 223 248 223 248 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF682-212 - 422 1.1e-81 265.8 115.2 7 12 1.8e-11 1.7e-08 34.5 0.8 3 26 253 276 252 276 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF682-212 - 422 1.1e-81 265.8 115.2 8 12 1.9e-09 1.9e-06 28.0 2.1 2 26 280 304 280 304 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF682-212 - 422 1.1e-81 265.8 115.2 9 12 5.6e-12 5.6e-09 36.0 2.1 2 25 308 331 307 331 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF682-212 - 422 1.1e-81 265.8 115.2 10 12 1.5e-11 1.5e-08 34.7 0.7 2 25 336 359 336 360 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF682-212 - 422 1.1e-81 265.8 115.2 11 12 2.1e-09 2e-06 27.9 4.4 1 26 363 388 363 388 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF682-212 - 422 1.1e-81 265.8 115.2 12 12 0.0031 3.1 8.4 3.2 1 26 391 416 391 416 0.93 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZNF682-212 - 422 2.4e-47 156.8 116.7 1 13 0.027 27 5.5 0.2 5 18 73 86 71 86 0.91 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF682-212 - 422 2.4e-47 156.8 116.7 2 13 5.1e-06 0.005 17.2 2.2 1 23 97 119 97 119 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF682-212 - 422 2.4e-47 156.8 116.7 3 13 2.3e-05 0.022 15.2 2.5 2 23 126 147 125 147 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF682-212 - 422 2.4e-47 156.8 116.7 4 13 9.9e-07 0.00099 19.4 2.0 1 23 153 175 153 175 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF682-212 - 422 2.4e-47 156.8 116.7 5 13 0.0018 1.8 9.2 3.5 1 23 181 203 181 203 0.94 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF682-212 - 422 2.4e-47 156.8 116.7 6 13 3.7e-08 3.7e-05 23.9 4.2 1 23 209 231 209 231 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF682-212 - 422 2.4e-47 156.8 116.7 7 13 5.5e-08 5.5e-05 23.4 4.1 1 23 237 259 237 259 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF682-212 - 422 2.4e-47 156.8 116.7 8 13 7.8e-06 0.0077 16.6 0.2 1 23 265 287 265 287 0.93 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF682-212 - 422 2.4e-47 156.8 116.7 9 13 2.1e-08 2.1e-05 24.7 3.8 1 23 293 315 293 315 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF682-212 - 422 2.4e-47 156.8 116.7 10 13 6.3e-05 0.063 13.8 0.2 1 23 321 343 321 343 0.92 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF682-212 - 422 2.4e-47 156.8 116.7 11 13 5.6e-08 5.5e-05 23.4 4.7 1 23 349 371 349 371 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF682-212 - 422 2.4e-47 156.8 116.7 12 13 5.1e-08 5.1e-05 23.5 2.5 1 21 377 397 377 398 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF682-212 - 422 2.4e-47 156.8 116.7 13 13 0.0085 8.5 7.1 2.1 3 17 405 421 404 422 0.90 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZNF682-212 - 422 3.1e-22 77.3 111.5 1 13 3 3e+03 -0.4 0.1 6 17 74 85 71 86 0.78 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF682-212 - 422 3.1e-22 77.3 111.5 2 13 5.6e-06 0.0056 17.4 1.9 1 23 97 119 97 120 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF682-212 - 422 3.1e-22 77.3 111.5 3 13 0.004 4 8.5 2.6 2 23 126 147 125 148 0.83 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF682-212 - 422 3.1e-22 77.3 111.5 4 13 0.00034 0.34 11.9 2.3 1 23 153 175 153 176 0.88 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF682-212 - 422 3.1e-22 77.3 111.5 5 13 0.0046 4.6 8.4 4.0 1 23 181 203 181 204 0.88 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF682-212 - 422 3.1e-22 77.3 111.5 6 13 0.00019 0.19 12.7 2.7 1 23 209 231 209 232 0.91 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF682-212 - 422 3.1e-22 77.3 111.5 7 13 0.00011 0.11 13.4 3.5 1 23 237 259 237 260 0.82 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF682-212 - 422 3.1e-22 77.3 111.5 8 13 9.9e-05 0.098 13.5 0.2 1 23 265 287 265 288 0.89 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF682-212 - 422 3.1e-22 77.3 111.5 9 13 6.6e-05 0.066 14.1 2.7 1 23 293 315 293 316 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF682-212 - 422 3.1e-22 77.3 111.5 10 13 0.00029 0.29 12.1 0.3 1 23 321 343 321 344 0.87 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF682-212 - 422 3.1e-22 77.3 111.5 11 13 1.9e-05 0.019 15.8 3.7 1 23 349 371 349 372 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF682-212 - 422 3.1e-22 77.3 111.5 12 13 4.4e-05 0.044 14.6 2.4 1 21 377 397 377 399 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF682-212 - 422 3.1e-22 77.3 111.5 13 13 2.1 2.1e+03 0.0 1.3 3 16 405 420 403 422 0.78 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF682-212 - 422 8.4e-13 48.0 101.8 1 12 6.5 6.5e+03 -2.7 0.1 6 13 73 80 72 85 0.75 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF682-212 - 422 8.4e-13 48.0 101.8 2 12 0.00025 0.25 11.4 1.9 2 24 97 119 96 122 0.86 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF682-212 - 422 8.4e-13 48.0 101.8 3 12 0.00031 0.31 11.1 0.6 3 24 126 147 126 150 0.92 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF682-212 - 422 8.4e-13 48.0 101.8 4 12 9.1e-05 0.09 12.8 2.7 2 24 153 175 153 178 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF682-212 - 422 8.4e-13 48.0 101.8 5 12 0.012 12 6.1 1.5 2 12 181 191 181 191 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF682-212 - 422 8.4e-13 48.0 101.8 6 12 0.17 1.7e+02 2.4 2.3 2 24 209 231 209 233 0.89 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF682-212 - 422 8.4e-13 48.0 101.8 7 12 0.0017 1.7 8.7 2.4 2 12 237 247 237 260 0.87 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF682-212 - 422 8.4e-13 48.0 101.8 8 12 0.00011 0.11 12.5 0.5 2 21 265 284 265 289 0.90 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF682-212 - 422 8.4e-13 48.0 101.8 9 12 4.3e-05 0.043 13.8 2.2 2 24 293 315 293 318 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF682-212 - 422 8.4e-13 48.0 101.8 10 12 0.0013 1.3 9.1 0.3 2 24 321 343 321 346 0.81 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF682-212 - 422 8.4e-13 48.0 101.8 11 12 0.0005 0.5 10.4 3.2 2 24 349 371 349 374 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF682-212 - 422 8.4e-13 48.0 101.8 12 12 0.00013 0.13 12.3 3.4 1 22 376 397 376 398 0.95 C2H2-type zinc finger Zn-ribbon_8 PF09723.10 40 ZNF682-212 - 422 9.1e-12 44.9 71.9 1 10 5.4e-05 0.053 13.6 1.3 6 35 97 133 96 140 0.84 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF682-212 - 422 9.1e-12 44.9 71.9 2 10 0.0004 0.4 10.8 8.0 6 34 153 188 152 191 0.89 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF682-212 - 422 9.1e-12 44.9 71.9 3 10 7.1e-05 0.071 13.2 6.3 6 38 181 220 179 222 0.84 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF682-212 - 422 9.1e-12 44.9 71.9 4 10 0.0046 4.5 7.5 0.3 6 18 209 221 208 231 0.81 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF682-212 - 422 9.1e-12 44.9 71.9 5 10 0.0012 1.2 9.3 8.4 6 34 237 272 236 274 0.80 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF682-212 - 422 9.1e-12 44.9 71.9 6 10 0.0022 2.2 8.5 0.7 6 16 265 275 264 288 0.84 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF682-212 - 422 9.1e-12 44.9 71.9 7 10 0.0015 1.5 9.0 0.3 6 19 293 306 292 316 0.87 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF682-212 - 422 9.1e-12 44.9 71.9 8 10 1.7e-05 0.017 15.2 4.6 6 38 321 360 320 362 0.89 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF682-212 - 422 9.1e-12 44.9 71.9 9 10 0.0088 8.8 6.5 0.9 6 17 349 360 348 368 0.84 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF682-212 - 422 9.1e-12 44.9 71.9 10 10 0.027 27 5.0 6.3 6 22 377 393 374 414 0.72 Zinc ribbon domain zf_UBZ PF18439.1 32 ZNF682-212 - 422 6.6e-09 35.2 58.7 1 11 0.019 19 4.9 0.1 3 15 97 109 95 115 0.87 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF682-212 - 422 6.6e-09 35.2 58.7 2 11 0.023 23 4.7 0.5 4 12 126 134 124 139 0.89 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF682-212 - 422 6.6e-09 35.2 58.7 3 11 0.0077 7.7 6.2 0.2 3 12 153 162 151 164 0.87 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF682-212 - 422 6.6e-09 35.2 58.7 4 11 0.0086 8.5 6.1 0.3 3 12 181 190 179 191 0.86 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF682-212 - 422 6.6e-09 35.2 58.7 5 11 0.0046 4.6 6.9 0.2 3 15 209 221 207 228 0.79 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF682-212 - 422 6.6e-09 35.2 58.7 6 11 0.018 18 5.0 0.6 3 12 237 246 235 252 0.87 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF682-212 - 422 6.6e-09 35.2 58.7 7 11 0.00016 0.16 11.6 0.2 3 20 265 283 263 284 0.91 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF682-212 - 422 6.6e-09 35.2 58.7 8 11 0.0081 8.1 6.1 0.2 3 13 293 303 291 311 0.85 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF682-212 - 422 6.6e-09 35.2 58.7 9 11 0.0014 1.4 8.6 0.1 3 20 321 339 319 340 0.83 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF682-212 - 422 6.6e-09 35.2 58.7 10 11 0.02 20 4.9 1.1 3 12 349 358 347 362 0.88 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF682-212 - 422 6.6e-09 35.2 58.7 11 11 0.0046 4.5 6.9 1.9 2 20 376 395 375 396 0.79 Ubiquitin-Binding Zinc Finger XPA_N PF01286.18 32 ZNF682-212 - 422 1.8e-08 34.3 68.8 1 11 0.12 1.2e+02 2.9 0.4 3 12 98 107 97 109 0.89 XPA protein N-terminal XPA_N PF01286.18 32 ZNF682-212 - 422 1.8e-08 34.3 68.8 2 11 0.0048 4.8 7.3 1.5 3 17 126 141 125 143 0.75 XPA protein N-terminal XPA_N PF01286.18 32 ZNF682-212 - 422 1.8e-08 34.3 68.8 3 11 0.0039 3.8 7.6 0.2 3 11 154 162 152 164 0.90 XPA protein N-terminal XPA_N PF01286.18 32 ZNF682-212 - 422 1.8e-08 34.3 68.8 4 11 0.0024 2.4 8.3 0.2 3 12 182 191 180 192 0.90 XPA protein N-terminal XPA_N PF01286.18 32 ZNF682-212 - 422 1.8e-08 34.3 68.8 5 11 0.03 30 4.8 0.0 3 12 210 219 208 227 0.85 XPA protein N-terminal XPA_N PF01286.18 32 ZNF682-212 - 422 1.8e-08 34.3 68.8 6 11 0.0021 2.1 8.4 0.5 3 18 238 253 236 256 0.83 XPA protein N-terminal XPA_N PF01286.18 32 ZNF682-212 - 422 1.8e-08 34.3 68.8 7 11 0.0003 0.3 11.1 0.1 3 16 266 279 264 285 0.83 XPA protein N-terminal XPA_N PF01286.18 32 ZNF682-212 - 422 1.8e-08 34.3 68.8 8 11 0.014 14 5.8 0.3 3 18 294 310 292 311 0.79 XPA protein N-terminal XPA_N PF01286.18 32 ZNF682-212 - 422 1.8e-08 34.3 68.8 9 11 0.0012 1.2 9.3 0.1 3 14 322 333 320 339 0.83 XPA protein N-terminal XPA_N PF01286.18 32 ZNF682-212 - 422 1.8e-08 34.3 68.8 10 11 0.0045 4.4 7.4 0.8 3 12 350 359 348 364 0.90 XPA protein N-terminal XPA_N PF01286.18 32 ZNF682-212 - 422 1.8e-08 34.3 68.8 11 11 0.0045 4.5 7.4 1.2 3 12 378 387 376 392 0.90 XPA protein N-terminal # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF682-212.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF682-212.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF682-212.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF682-212.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF682-212.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:12:23 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF682-213.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF682-213.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF682-213.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF682-213.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF682-213.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:12:23 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- KRAB PF01352.27 42 ZNF684-201 - 92 3.8e-25 87.2 0.8 1 1 2.9e-29 5.1e-25 86.8 0.8 1 42 7 48 7 48 0.99 KRAB box # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF684-201.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF684-201.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF684-201.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF684-201.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF684-201.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:12:23 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- KRAB PF01352.27 42 ZNF684-202 - 119 5.8e-25 86.7 0.8 1 1 5.1e-29 9.2e-25 86.0 0.8 1 42 7 48 7 48 0.99 KRAB box # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF684-202.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF684-202.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF684-202.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF684-202.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF684-202.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:12:24 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZNF684-203 - 378 1.3e-56 186.6 58.6 1 9 1.5e-05 0.0094 16.3 0.6 10 26 154 170 151 170 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF684-203 - 378 1.3e-56 186.6 58.6 2 9 3.8e-08 2.4e-05 24.5 4.0 2 25 174 197 173 198 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF684-203 - 378 1.3e-56 186.6 58.6 3 9 7.5e-08 4.8e-05 23.6 1.1 1 24 201 224 201 226 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF684-203 - 378 1.3e-56 186.6 58.6 4 9 1e-11 6.5e-09 35.8 0.3 2 25 230 253 229 253 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF684-203 - 378 1.3e-56 186.6 58.6 5 9 2.5e-07 0.00016 21.9 2.5 2 25 258 281 257 282 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF684-203 - 378 1.3e-56 186.6 58.6 6 9 5.9e-12 3.8e-09 36.6 0.4 1 26 285 310 285 310 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF684-203 - 378 1.3e-56 186.6 58.6 7 9 2e-10 1.3e-07 31.8 0.2 2 24 314 336 314 338 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF684-203 - 378 1.3e-56 186.6 58.6 8 9 1.2e-10 7.9e-08 32.4 0.9 1 25 341 365 341 366 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF684-203 - 378 1.3e-56 186.6 58.6 9 9 4.3 2.8e+03 -0.9 0.1 1 10 369 378 369 378 0.85 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZNF684-203 - 378 6.7e-42 139.7 55.5 1 8 1e-06 0.00067 20.0 3.3 1 23 159 181 159 181 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF684-203 - 378 6.7e-42 139.7 55.5 2 8 1.1e-08 7.2e-06 26.2 0.8 1 23 187 209 187 209 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF684-203 - 378 6.7e-42 139.7 55.5 3 8 1.5e-08 9.5e-06 25.8 0.6 1 23 215 237 215 237 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF684-203 - 378 6.7e-42 139.7 55.5 4 8 9.4e-06 0.006 17.0 1.2 1 23 243 265 243 265 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF684-203 - 378 6.7e-42 139.7 55.5 5 8 7.2e-07 0.00046 20.5 3.5 1 23 271 293 271 293 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF684-203 - 378 6.7e-42 139.7 55.5 6 8 1.9e-05 0.012 16.0 0.1 1 23 299 321 299 321 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF684-203 - 378 6.7e-42 139.7 55.5 7 8 1.4e-06 0.00092 19.5 1.2 1 23 327 349 327 349 0.95 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF684-203 - 378 6.7e-42 139.7 55.5 8 8 2.4e-09 1.5e-06 28.3 0.3 1 23 355 377 355 377 0.98 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZNF684-203 - 378 3.3e-26 89.7 53.9 1 8 2.1e-05 0.014 16.2 2.8 1 23 159 181 159 182 0.97 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF684-203 - 378 3.3e-26 89.7 53.9 2 8 3.8e-05 0.024 15.4 0.6 1 23 187 209 187 210 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF684-203 - 378 3.3e-26 89.7 53.9 3 8 0.0005 0.32 12.0 0.7 1 23 215 237 215 238 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF684-203 - 378 3.3e-26 89.7 53.9 4 8 4.7e-06 0.003 18.3 1.2 1 23 243 265 243 266 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF684-203 - 378 3.3e-26 89.7 53.9 5 8 2.1e-05 0.013 16.2 2.9 1 23 271 293 271 294 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF684-203 - 378 3.3e-26 89.7 53.9 6 8 0.0002 0.13 13.2 0.1 1 23 299 321 299 322 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF684-203 - 378 3.3e-26 89.7 53.9 7 8 4.6e-05 0.03 15.2 1.0 1 23 327 349 327 350 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF684-203 - 378 3.3e-26 89.7 53.9 8 8 1.6e-05 0.01 16.6 0.3 1 23 355 377 355 378 0.95 C2H2-type zinc finger KRAB PF01352.27 42 ZNF684-203 - 378 3.3e-24 84.3 0.8 1 1 1e-26 6.4e-24 83.3 0.8 1 42 7 48 7 48 0.99 KRAB box Zn-ribbon_8 PF09723.10 40 ZNF684-203 - 378 2.1e-08 34.1 33.0 1 7 0.00048 0.31 11.2 5.8 6 38 159 198 158 200 0.71 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF684-203 - 378 2.1e-08 34.1 33.0 2 7 0.0011 0.72 10.0 2.5 6 34 187 222 186 228 0.89 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF684-203 - 378 2.1e-08 34.1 33.0 3 7 0.00034 0.22 11.7 3.1 6 35 215 251 214 253 0.90 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF684-203 - 378 2.1e-08 34.1 33.0 4 7 0.00088 0.56 10.4 6.1 6 36 243 280 242 281 0.82 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF684-203 - 378 2.1e-08 34.1 33.0 5 7 0.0017 1.1 9.5 2.8 6 34 271 306 270 308 0.86 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF684-203 - 378 2.1e-08 34.1 33.0 6 7 0.0024 1.6 8.9 0.2 6 35 299 335 297 340 0.89 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF684-203 - 378 2.1e-08 34.1 33.0 7 7 0.0052 3.3 7.9 0.1 6 16 355 365 354 377 0.80 Zinc ribbon domain zf-C2H2_6 PF13912.6 27 ZNF684-203 - 378 4.3e-07 29.8 50.8 1 8 0.00017 0.11 12.5 0.7 1 12 158 169 158 170 0.91 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF684-203 - 378 4.3e-07 29.8 50.8 2 8 0.27 1.7e+02 2.4 2.2 2 13 187 198 187 210 0.76 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF684-203 - 378 4.3e-07 29.8 50.8 3 8 0.28 1.8e+02 2.3 0.1 2 11 215 224 215 225 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF684-203 - 378 4.3e-07 29.8 50.8 4 8 0.00036 0.23 11.5 1.0 2 12 243 253 243 265 0.87 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF684-203 - 378 4.3e-07 29.8 50.8 5 8 8.5e-06 0.0055 16.7 3.4 2 24 271 293 270 296 0.91 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF684-203 - 378 4.3e-07 29.8 50.8 6 8 0.043 28 4.9 0.1 2 20 299 317 299 323 0.79 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF684-203 - 378 4.3e-07 29.8 50.8 7 8 0.6 3.8e+02 1.2 0.5 2 11 327 336 327 341 0.90 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF684-203 - 378 4.3e-07 29.8 50.8 8 8 0.0099 6.4 6.9 0.5 2 20 355 373 355 377 0.78 C2H2-type zinc finger # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF684-203.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF684-203.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF684-203.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF684-203.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF684-203.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:12:24 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF684-204.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF684-204.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF684-204.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF684-204.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF684-204.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:12:24 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF684-205.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF684-205.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF684-205.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF684-205.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF684-205.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:12:25 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZNF684-206 - 266 3.1e-58 191.7 58.6 1 9 1.3e-05 0.0061 16.9 0.6 10 26 42 58 39 58 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF684-206 - 266 3.1e-58 191.7 58.6 2 9 3.3e-08 1.5e-05 25.2 4.0 2 25 62 85 61 86 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF684-206 - 266 3.1e-58 191.7 58.6 3 9 6.6e-08 3e-05 24.2 1.1 1 24 89 112 89 114 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF684-206 - 266 3.1e-58 191.7 58.6 4 9 9e-12 4.1e-09 36.4 0.3 2 25 118 141 117 141 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF684-206 - 266 3.1e-58 191.7 58.6 5 9 2.2e-07 0.0001 22.6 2.5 2 25 146 169 145 170 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF684-206 - 266 3.1e-58 191.7 58.6 6 9 5.2e-12 2.4e-09 37.2 0.4 1 26 173 198 173 198 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF684-206 - 266 3.1e-58 191.7 58.6 7 9 1.7e-10 8e-08 32.4 0.2 2 24 202 224 202 226 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF684-206 - 266 3.1e-58 191.7 58.6 8 9 1.1e-10 5e-08 33.0 0.9 1 25 229 253 229 254 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF684-206 - 266 3.1e-58 191.7 58.6 9 9 4 1.8e+03 -0.4 0.1 1 10 257 266 257 266 0.85 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZNF684-206 - 266 2e-43 144.4 55.5 1 8 9.2e-07 0.00042 20.6 3.3 1 23 47 69 47 69 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF684-206 - 266 2e-43 144.4 55.5 2 8 1e-08 4.6e-06 26.8 0.8 1 23 75 97 75 97 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF684-206 - 266 2e-43 144.4 55.5 3 8 1.3e-08 6.1e-06 26.4 0.6 1 23 103 125 103 125 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF684-206 - 266 2e-43 144.4 55.5 4 8 8.3e-06 0.0038 17.6 1.2 1 23 131 153 131 153 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF684-206 - 266 2e-43 144.4 55.5 5 8 6.4e-07 0.0003 21.1 3.5 1 23 159 181 159 181 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF684-206 - 266 2e-43 144.4 55.5 6 8 1.7e-05 0.0077 16.6 0.1 1 23 187 209 187 209 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF684-206 - 266 2e-43 144.4 55.5 7 8 1.3e-06 0.00058 20.2 1.2 1 23 215 237 215 237 0.95 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF684-206 - 266 2e-43 144.4 55.5 8 8 2.1e-09 9.8e-07 28.9 0.3 1 23 243 265 243 265 0.98 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZNF684-206 - 266 1e-27 94.4 53.9 1 8 1.9e-05 0.0087 16.8 2.8 1 23 47 69 47 70 0.97 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF684-206 - 266 1e-27 94.4 53.9 2 8 3.3e-05 0.015 16.1 0.6 1 23 75 97 75 98 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF684-206 - 266 1e-27 94.4 53.9 3 8 0.00044 0.2 12.6 0.7 1 23 103 125 103 126 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF684-206 - 266 1e-27 94.4 53.9 4 8 4.1e-06 0.0019 18.9 1.2 1 23 131 153 131 154 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF684-206 - 266 1e-27 94.4 53.9 5 8 1.8e-05 0.0084 16.9 2.9 1 23 159 181 159 182 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF684-206 - 266 1e-27 94.4 53.9 6 8 0.00018 0.082 13.8 0.1 1 23 187 209 187 210 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF684-206 - 266 1e-27 94.4 53.9 7 8 4.1e-05 0.019 15.8 1.0 1 23 215 237 215 238 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF684-206 - 266 1e-27 94.4 53.9 8 8 1.4e-05 0.0065 17.2 0.3 1 23 243 265 243 266 0.95 C2H2-type zinc finger Zn-ribbon_8 PF09723.10 40 ZNF684-206 - 266 2.7e-09 37.0 33.6 1 7 0.00048 0.22 11.7 6.0 6 38 47 86 46 88 0.71 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF684-206 - 266 2.7e-09 37.0 33.6 2 7 0.0011 0.51 10.5 2.7 6 34 75 110 74 116 0.89 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF684-206 - 266 2.7e-09 37.0 33.6 3 7 0.0003 0.14 12.3 3.2 6 35 103 139 102 141 0.90 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF684-206 - 266 2.7e-09 37.0 33.6 4 7 0.00071 0.32 11.1 6.0 6 36 131 168 130 169 0.82 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF684-206 - 266 2.7e-09 37.0 33.6 5 7 0.0012 0.56 10.4 2.7 6 34 159 194 157 197 0.86 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF684-206 - 266 2.7e-09 37.0 33.6 6 7 0.0022 0.99 9.6 0.3 6 35 187 223 186 228 0.89 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF684-206 - 266 2.7e-09 37.0 33.6 7 7 0.0047 2.2 8.5 0.1 6 16 243 253 242 265 0.79 Zinc ribbon domain zf-C2H2_6 PF13912.6 27 ZNF684-206 - 266 8.9e-09 35.1 50.3 1 8 0.00016 0.074 13.1 0.7 1 12 46 57 46 58 0.91 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF684-206 - 266 8.9e-09 35.1 50.3 2 8 0.29 1.3e+02 2.7 2.3 2 13 75 86 75 97 0.76 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF684-206 - 266 8.9e-09 35.1 50.3 3 8 0.26 1.2e+02 2.8 0.1 2 11 103 112 103 113 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF684-206 - 266 8.9e-09 35.1 50.3 4 8 0.00033 0.15 12.1 1.0 2 12 131 141 131 153 0.87 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF684-206 - 266 8.9e-09 35.1 50.3 5 8 7.6e-06 0.0035 17.3 3.4 2 24 159 181 158 184 0.91 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF684-206 - 266 8.9e-09 35.1 50.3 6 8 0.039 18 5.5 0.1 2 20 187 205 187 211 0.79 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF684-206 - 266 8.9e-09 35.1 50.3 7 8 0.49 2.2e+02 2.0 0.3 2 11 215 224 215 230 0.91 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF684-206 - 266 8.9e-09 35.1 50.3 8 8 0.009 4.1 7.5 0.5 2 20 243 261 243 265 0.78 C2H2-type zinc finger DZR PF12773.7 49 ZNF684-206 - 266 1.6e-07 31.2 24.8 1 3 0.013 5.8 7.0 11.8 1 44 77 146 38 149 0.71 Double zinc ribbon DZR PF12773.7 49 ZNF684-206 - 266 1.6e-07 31.2 24.8 2 3 0.0027 1.2 9.2 0.4 12 37 158 195 151 201 0.83 Double zinc ribbon DZR PF12773.7 49 ZNF684-206 - 266 1.6e-07 31.2 24.8 3 3 0.00019 0.087 12.9 0.5 13 43 215 257 205 258 0.86 Double zinc ribbon zf-C2H2_jaz PF12171.8 27 ZNF684-206 - 266 4.1e-07 30.1 42.0 1 8 0.023 11 6.5 3.9 2 23 47 68 46 72 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF684-206 - 266 4.1e-07 30.1 42.0 2 8 0.14 65 4.0 0.2 2 22 75 95 74 95 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF684-206 - 266 4.1e-07 30.1 42.0 3 8 0.7 3.2e+02 1.8 0.1 2 22 103 123 102 123 0.88 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF684-206 - 266 4.1e-07 30.1 42.0 4 8 0.0012 0.55 10.6 1.6 2 24 131 153 130 153 0.95 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF684-206 - 266 4.1e-07 30.1 42.0 5 8 0.009 4.1 7.8 0.6 2 12 159 169 158 177 0.85 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF684-206 - 266 4.1e-07 30.1 42.0 6 8 0.00059 0.27 11.6 0.0 4 22 189 207 186 207 0.91 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF684-206 - 266 4.1e-07 30.1 42.0 7 8 0.00093 0.43 10.9 0.4 2 22 215 235 214 237 0.89 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF684-206 - 266 4.1e-07 30.1 42.0 8 8 1.6 7.4e+02 0.6 0.2 2 22 243 263 242 263 0.85 Zinc-finger double-stranded RNA-binding # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF684-206.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF684-206.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF684-206.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF684-206.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF684-206.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:12:25 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZNF684-207 - 378 1.3e-56 186.6 58.6 1 9 1.5e-05 0.0094 16.3 0.6 10 26 154 170 151 170 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF684-207 - 378 1.3e-56 186.6 58.6 2 9 3.8e-08 2.4e-05 24.5 4.0 2 25 174 197 173 198 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF684-207 - 378 1.3e-56 186.6 58.6 3 9 7.5e-08 4.8e-05 23.6 1.1 1 24 201 224 201 226 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF684-207 - 378 1.3e-56 186.6 58.6 4 9 1e-11 6.5e-09 35.8 0.3 2 25 230 253 229 253 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF684-207 - 378 1.3e-56 186.6 58.6 5 9 2.5e-07 0.00016 21.9 2.5 2 25 258 281 257 282 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF684-207 - 378 1.3e-56 186.6 58.6 6 9 5.9e-12 3.8e-09 36.6 0.4 1 26 285 310 285 310 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF684-207 - 378 1.3e-56 186.6 58.6 7 9 2e-10 1.3e-07 31.8 0.2 2 24 314 336 314 338 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF684-207 - 378 1.3e-56 186.6 58.6 8 9 1.2e-10 7.9e-08 32.4 0.9 1 25 341 365 341 366 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF684-207 - 378 1.3e-56 186.6 58.6 9 9 4.3 2.8e+03 -0.9 0.1 1 10 369 378 369 378 0.85 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZNF684-207 - 378 6.7e-42 139.7 55.5 1 8 1e-06 0.00067 20.0 3.3 1 23 159 181 159 181 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF684-207 - 378 6.7e-42 139.7 55.5 2 8 1.1e-08 7.2e-06 26.2 0.8 1 23 187 209 187 209 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF684-207 - 378 6.7e-42 139.7 55.5 3 8 1.5e-08 9.5e-06 25.8 0.6 1 23 215 237 215 237 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF684-207 - 378 6.7e-42 139.7 55.5 4 8 9.4e-06 0.006 17.0 1.2 1 23 243 265 243 265 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF684-207 - 378 6.7e-42 139.7 55.5 5 8 7.2e-07 0.00046 20.5 3.5 1 23 271 293 271 293 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF684-207 - 378 6.7e-42 139.7 55.5 6 8 1.9e-05 0.012 16.0 0.1 1 23 299 321 299 321 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF684-207 - 378 6.7e-42 139.7 55.5 7 8 1.4e-06 0.00092 19.5 1.2 1 23 327 349 327 349 0.95 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF684-207 - 378 6.7e-42 139.7 55.5 8 8 2.4e-09 1.5e-06 28.3 0.3 1 23 355 377 355 377 0.98 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZNF684-207 - 378 3.3e-26 89.7 53.9 1 8 2.1e-05 0.014 16.2 2.8 1 23 159 181 159 182 0.97 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF684-207 - 378 3.3e-26 89.7 53.9 2 8 3.8e-05 0.024 15.4 0.6 1 23 187 209 187 210 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF684-207 - 378 3.3e-26 89.7 53.9 3 8 0.0005 0.32 12.0 0.7 1 23 215 237 215 238 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF684-207 - 378 3.3e-26 89.7 53.9 4 8 4.7e-06 0.003 18.3 1.2 1 23 243 265 243 266 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF684-207 - 378 3.3e-26 89.7 53.9 5 8 2.1e-05 0.013 16.2 2.9 1 23 271 293 271 294 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF684-207 - 378 3.3e-26 89.7 53.9 6 8 0.0002 0.13 13.2 0.1 1 23 299 321 299 322 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF684-207 - 378 3.3e-26 89.7 53.9 7 8 4.6e-05 0.03 15.2 1.0 1 23 327 349 327 350 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF684-207 - 378 3.3e-26 89.7 53.9 8 8 1.6e-05 0.01 16.6 0.3 1 23 355 377 355 378 0.95 C2H2-type zinc finger KRAB PF01352.27 42 ZNF684-207 - 378 3.3e-24 84.3 0.8 1 1 1e-26 6.4e-24 83.3 0.8 1 42 7 48 7 48 0.99 KRAB box Zn-ribbon_8 PF09723.10 40 ZNF684-207 - 378 2.1e-08 34.1 33.0 1 7 0.00048 0.31 11.2 5.8 6 38 159 198 158 200 0.71 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF684-207 - 378 2.1e-08 34.1 33.0 2 7 0.0011 0.72 10.0 2.5 6 34 187 222 186 228 0.89 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF684-207 - 378 2.1e-08 34.1 33.0 3 7 0.00034 0.22 11.7 3.1 6 35 215 251 214 253 0.90 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF684-207 - 378 2.1e-08 34.1 33.0 4 7 0.00088 0.56 10.4 6.1 6 36 243 280 242 281 0.82 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF684-207 - 378 2.1e-08 34.1 33.0 5 7 0.0017 1.1 9.5 2.8 6 34 271 306 270 308 0.86 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF684-207 - 378 2.1e-08 34.1 33.0 6 7 0.0024 1.6 8.9 0.2 6 35 299 335 297 340 0.89 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF684-207 - 378 2.1e-08 34.1 33.0 7 7 0.0052 3.3 7.9 0.1 6 16 355 365 354 377 0.80 Zinc ribbon domain zf-C2H2_6 PF13912.6 27 ZNF684-207 - 378 4.3e-07 29.8 50.8 1 8 0.00017 0.11 12.5 0.7 1 12 158 169 158 170 0.91 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF684-207 - 378 4.3e-07 29.8 50.8 2 8 0.27 1.7e+02 2.4 2.2 2 13 187 198 187 210 0.76 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF684-207 - 378 4.3e-07 29.8 50.8 3 8 0.28 1.8e+02 2.3 0.1 2 11 215 224 215 225 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF684-207 - 378 4.3e-07 29.8 50.8 4 8 0.00036 0.23 11.5 1.0 2 12 243 253 243 265 0.87 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF684-207 - 378 4.3e-07 29.8 50.8 5 8 8.5e-06 0.0055 16.7 3.4 2 24 271 293 270 296 0.91 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF684-207 - 378 4.3e-07 29.8 50.8 6 8 0.043 28 4.9 0.1 2 20 299 317 299 323 0.79 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF684-207 - 378 4.3e-07 29.8 50.8 7 8 0.6 3.8e+02 1.2 0.5 2 11 327 336 327 341 0.90 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF684-207 - 378 4.3e-07 29.8 50.8 8 8 0.0099 6.4 6.9 0.5 2 20 355 373 355 377 0.78 C2H2-type zinc finger # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF684-207.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF684-207.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF684-207.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF684-207.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF684-207.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:12:26 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-C2H2_11 PF16622.5 29 ZNF687-201 - 1237 4.8e-18 64.6 9.9 1 11 1.2e-05 0.023 14.4 0.0 5 23 533 551 531 553 0.94 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF687-201 - 1237 4.8e-18 64.6 9.9 2 11 0.32 6.4e+02 0.2 1.5 5 11 673 679 670 681 0.85 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF687-201 - 1237 4.8e-18 64.6 9.9 3 11 2.2 4.4e+03 -2.4 0.2 7 14 735 742 733 742 0.85 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF687-201 - 1237 4.8e-18 64.6 9.9 4 11 1.5 2.9e+03 -1.9 0.3 5 28 764 787 763 787 0.85 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF687-201 - 1237 4.8e-18 64.6 9.9 5 11 0.32 6.4e+02 0.2 0.2 5 23 827 845 827 846 0.90 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF687-201 - 1237 4.8e-18 64.6 9.9 6 11 5.1 1e+04 -3.6 0.1 5 15 858 868 856 874 0.83 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF687-201 - 1237 4.8e-18 64.6 9.9 7 11 1.1 2.2e+03 -1.5 0.2 9 15 964 970 963 970 0.82 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF687-201 - 1237 4.8e-18 64.6 9.9 8 11 2.7e-07 0.00054 19.7 1.2 7 28 995 1016 993 1017 0.96 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF687-201 - 1237 4.8e-18 64.6 9.9 9 11 0.00067 1.3 8.8 0.8 7 28 1028 1049 1025 1049 0.93 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF687-201 - 1237 4.8e-18 64.6 9.9 10 11 6.7e-18 1.3e-14 53.6 0.4 3 29 1133 1159 1131 1159 0.95 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF687-201 - 1237 4.8e-18 64.6 9.9 11 11 2.8 5.5e+03 -2.8 0.9 7 23 1202 1218 1200 1220 0.63 zinc-finger C2H2-type zf-C2H2_4 PF13894.6 24 ZNF687-201 - 1237 6.7e-18 63.9 98.2 1 14 0.0043 8.6 7.5 0.1 1 20 533 552 533 555 0.91 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF687-201 - 1237 6.7e-18 63.9 98.2 2 14 0.11 2.2e+02 3.1 3.3 2 23 562 585 561 586 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF687-201 - 1237 6.7e-18 63.9 98.2 3 14 0.081 1.6e+02 3.5 0.4 1 21 673 693 673 695 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF687-201 - 1237 6.7e-18 63.9 98.2 4 14 0.0095 19 6.4 1.5 2 23 706 727 705 728 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF687-201 - 1237 6.7e-18 63.9 98.2 5 14 0.005 9.9 7.3 0.1 1 21 733 752 733 753 0.87 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF687-201 - 1237 6.7e-18 63.9 98.2 6 14 0.00015 0.29 12.1 0.2 1 24 764 787 764 787 0.97 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF687-201 - 1237 6.7e-18 63.9 98.2 7 14 0.0037 7.4 7.7 1.4 1 24 792 815 792 815 0.88 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF687-201 - 1237 6.7e-18 63.9 98.2 8 14 0.0017 3.5 8.7 1.5 1 23 827 849 827 850 0.83 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF687-201 - 1237 6.7e-18 63.9 98.2 9 14 0.00056 1.1 10.3 0.6 1 24 858 881 858 881 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF687-201 - 1237 6.7e-18 63.9 98.2 10 14 0.00012 0.23 12.4 0.7 2 24 964 986 963 986 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF687-201 - 1237 6.7e-18 63.9 98.2 11 14 8.5e-06 0.017 15.9 2.2 1 22 993 1014 993 1016 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF687-201 - 1237 6.7e-18 63.9 98.2 12 14 0.003 5.9 8.0 0.5 1 24 1023 1049 1023 1049 0.86 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF687-201 - 1237 6.7e-18 63.9 98.2 13 14 0.0012 2.3 9.3 1.1 2 24 1136 1158 1135 1158 0.90 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF687-201 - 1237 6.7e-18 63.9 98.2 14 14 2.6e-05 0.052 14.4 1.5 2 23 1201 1222 1200 1223 0.96 C2H2-type zinc finger zf-C2H2 PF00096.26 23 ZNF687-201 - 1237 1.7e-14 53.3 100.0 1 14 0.01 21 5.8 0.1 1 20 533 552 533 554 0.94 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF687-201 - 1237 1.7e-14 53.3 100.0 2 14 0.41 8.2e+02 0.8 3.1 2 23 562 585 561 585 0.94 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF687-201 - 1237 1.7e-14 53.3 100.0 3 14 0.083 1.7e+02 3.0 0.4 1 19 673 691 673 694 0.92 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF687-201 - 1237 1.7e-14 53.3 100.0 4 14 0.00067 1.3 9.6 1.8 2 23 706 727 706 727 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF687-201 - 1237 1.7e-14 53.3 100.0 5 14 0.017 35 5.1 0.9 1 21 733 752 733 757 0.92 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF687-201 - 1237 1.7e-14 53.3 100.0 6 14 0.0031 6.2 7.5 0.1 1 23 764 787 764 787 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF687-201 - 1237 1.7e-14 53.3 100.0 7 14 0.004 8 7.1 0.9 1 22 792 813 792 815 0.78 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF687-201 - 1237 1.7e-14 53.3 100.0 8 14 8.5e-05 0.17 12.4 2.0 1 23 827 849 827 849 0.93 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF687-201 - 1237 1.7e-14 53.3 100.0 9 14 0.0077 15 6.3 0.5 1 23 858 881 858 881 0.95 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF687-201 - 1237 1.7e-14 53.3 100.0 10 14 0.011 22 5.8 0.3 2 23 964 986 963 986 0.95 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF687-201 - 1237 1.7e-14 53.3 100.0 11 14 4.6e-06 0.0093 16.4 1.9 1 23 993 1016 993 1016 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF687-201 - 1237 1.7e-14 53.3 100.0 12 14 0.0059 12 6.6 0.6 1 23 1023 1049 1023 1049 0.95 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF687-201 - 1237 1.7e-14 53.3 100.0 13 14 2.3e-05 0.046 14.2 0.9 2 23 1136 1158 1135 1158 0.93 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF687-201 - 1237 1.7e-14 53.3 100.0 14 14 5.3e-06 0.011 16.2 2.7 2 23 1201 1222 1200 1222 0.97 Zinc finger, C2H2 type # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF687-201.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF687-201.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF687-201.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF687-201.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF687-201.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:12:26 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-C2H2_11 PF16622.5 29 ZNF687-202 - 1237 4.8e-18 64.6 9.9 1 11 1.2e-05 0.023 14.4 0.0 5 23 533 551 531 553 0.94 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF687-202 - 1237 4.8e-18 64.6 9.9 2 11 0.32 6.4e+02 0.2 1.5 5 11 673 679 670 681 0.85 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF687-202 - 1237 4.8e-18 64.6 9.9 3 11 2.2 4.4e+03 -2.4 0.2 7 14 735 742 733 742 0.85 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF687-202 - 1237 4.8e-18 64.6 9.9 4 11 1.5 2.9e+03 -1.9 0.3 5 28 764 787 763 787 0.85 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF687-202 - 1237 4.8e-18 64.6 9.9 5 11 0.32 6.4e+02 0.2 0.2 5 23 827 845 827 846 0.90 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF687-202 - 1237 4.8e-18 64.6 9.9 6 11 5.1 1e+04 -3.6 0.1 5 15 858 868 856 874 0.83 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF687-202 - 1237 4.8e-18 64.6 9.9 7 11 1.1 2.2e+03 -1.5 0.2 9 15 964 970 963 970 0.82 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF687-202 - 1237 4.8e-18 64.6 9.9 8 11 2.7e-07 0.00054 19.7 1.2 7 28 995 1016 993 1017 0.96 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF687-202 - 1237 4.8e-18 64.6 9.9 9 11 0.00067 1.3 8.8 0.8 7 28 1028 1049 1025 1049 0.93 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF687-202 - 1237 4.8e-18 64.6 9.9 10 11 6.7e-18 1.3e-14 53.6 0.4 3 29 1133 1159 1131 1159 0.95 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF687-202 - 1237 4.8e-18 64.6 9.9 11 11 2.8 5.5e+03 -2.8 0.9 7 23 1202 1218 1200 1220 0.63 zinc-finger C2H2-type zf-C2H2_4 PF13894.6 24 ZNF687-202 - 1237 6.7e-18 63.9 98.2 1 14 0.0043 8.6 7.5 0.1 1 20 533 552 533 555 0.91 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF687-202 - 1237 6.7e-18 63.9 98.2 2 14 0.11 2.2e+02 3.1 3.3 2 23 562 585 561 586 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF687-202 - 1237 6.7e-18 63.9 98.2 3 14 0.081 1.6e+02 3.5 0.4 1 21 673 693 673 695 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF687-202 - 1237 6.7e-18 63.9 98.2 4 14 0.0095 19 6.4 1.5 2 23 706 727 705 728 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF687-202 - 1237 6.7e-18 63.9 98.2 5 14 0.005 9.9 7.3 0.1 1 21 733 752 733 753 0.87 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF687-202 - 1237 6.7e-18 63.9 98.2 6 14 0.00015 0.29 12.1 0.2 1 24 764 787 764 787 0.97 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF687-202 - 1237 6.7e-18 63.9 98.2 7 14 0.0037 7.4 7.7 1.4 1 24 792 815 792 815 0.88 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF687-202 - 1237 6.7e-18 63.9 98.2 8 14 0.0017 3.5 8.7 1.5 1 23 827 849 827 850 0.83 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF687-202 - 1237 6.7e-18 63.9 98.2 9 14 0.00056 1.1 10.3 0.6 1 24 858 881 858 881 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF687-202 - 1237 6.7e-18 63.9 98.2 10 14 0.00012 0.23 12.4 0.7 2 24 964 986 963 986 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF687-202 - 1237 6.7e-18 63.9 98.2 11 14 8.5e-06 0.017 15.9 2.2 1 22 993 1014 993 1016 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF687-202 - 1237 6.7e-18 63.9 98.2 12 14 0.003 5.9 8.0 0.5 1 24 1023 1049 1023 1049 0.86 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF687-202 - 1237 6.7e-18 63.9 98.2 13 14 0.0012 2.3 9.3 1.1 2 24 1136 1158 1135 1158 0.90 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF687-202 - 1237 6.7e-18 63.9 98.2 14 14 2.6e-05 0.052 14.4 1.5 2 23 1201 1222 1200 1223 0.96 C2H2-type zinc finger zf-C2H2 PF00096.26 23 ZNF687-202 - 1237 1.7e-14 53.3 100.0 1 14 0.01 21 5.8 0.1 1 20 533 552 533 554 0.94 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF687-202 - 1237 1.7e-14 53.3 100.0 2 14 0.41 8.2e+02 0.8 3.1 2 23 562 585 561 585 0.94 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF687-202 - 1237 1.7e-14 53.3 100.0 3 14 0.083 1.7e+02 3.0 0.4 1 19 673 691 673 694 0.92 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF687-202 - 1237 1.7e-14 53.3 100.0 4 14 0.00067 1.3 9.6 1.8 2 23 706 727 706 727 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF687-202 - 1237 1.7e-14 53.3 100.0 5 14 0.017 35 5.1 0.9 1 21 733 752 733 757 0.92 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF687-202 - 1237 1.7e-14 53.3 100.0 6 14 0.0031 6.2 7.5 0.1 1 23 764 787 764 787 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF687-202 - 1237 1.7e-14 53.3 100.0 7 14 0.004 8 7.1 0.9 1 22 792 813 792 815 0.78 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF687-202 - 1237 1.7e-14 53.3 100.0 8 14 8.5e-05 0.17 12.4 2.0 1 23 827 849 827 849 0.93 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF687-202 - 1237 1.7e-14 53.3 100.0 9 14 0.0077 15 6.3 0.5 1 23 858 881 858 881 0.95 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF687-202 - 1237 1.7e-14 53.3 100.0 10 14 0.011 22 5.8 0.3 2 23 964 986 963 986 0.95 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF687-202 - 1237 1.7e-14 53.3 100.0 11 14 4.6e-06 0.0093 16.4 1.9 1 23 993 1016 993 1016 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF687-202 - 1237 1.7e-14 53.3 100.0 12 14 0.0059 12 6.6 0.6 1 23 1023 1049 1023 1049 0.95 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF687-202 - 1237 1.7e-14 53.3 100.0 13 14 2.3e-05 0.046 14.2 0.9 2 23 1136 1158 1135 1158 0.93 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF687-202 - 1237 1.7e-14 53.3 100.0 14 14 5.3e-06 0.011 16.2 2.7 2 23 1201 1222 1200 1222 0.97 Zinc finger, C2H2 type # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF687-202.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF687-202.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF687-202.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF687-202.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF687-202.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:12:27 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-C2H2_4 PF13894.6 24 ZNF687-203 - 691 3.6e-16 58.5 74.3 1 11 0.0025 4.4 8.4 0.1 1 20 121 140 121 143 0.91 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF687-203 - 691 3.6e-16 58.5 74.3 2 11 0.061 1.1e+02 4.1 3.3 2 23 150 173 149 174 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF687-203 - 691 3.6e-16 58.5 74.3 3 11 0.046 83 4.4 0.4 1 21 261 281 261 283 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF687-203 - 691 3.6e-16 58.5 74.3 4 11 0.0054 9.7 7.3 1.5 2 23 294 315 293 316 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF687-203 - 691 3.6e-16 58.5 74.3 5 11 0.0028 5.1 8.2 0.1 1 21 321 340 321 341 0.87 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF687-203 - 691 3.6e-16 58.5 74.3 6 11 8.3e-05 0.15 13.0 0.2 1 24 352 375 352 375 0.97 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF687-203 - 691 3.6e-16 58.5 74.3 7 11 0.0021 3.8 8.6 1.4 1 24 380 403 380 403 0.88 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF687-203 - 691 3.6e-16 58.5 74.3 8 11 0.001 1.8 9.6 1.5 1 23 415 437 415 438 0.83 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF687-203 - 691 3.6e-16 58.5 74.3 9 11 0.00032 0.57 11.2 0.6 1 24 446 469 446 469 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF687-203 - 691 3.6e-16 58.5 74.3 10 11 6.5e-05 0.12 13.3 0.7 2 24 552 574 551 574 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF687-203 - 691 3.6e-16 58.5 74.3 11 11 4.8e-06 0.0086 16.8 2.2 1 22 581 602 581 604 0.92 C2H2-type zinc finger zf-C2H2 PF00096.26 23 ZNF687-203 - 691 3.7e-10 39.7 77.9 1 11 0.006 11 6.7 0.1 1 20 121 140 121 142 0.94 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF687-203 - 691 3.7e-10 39.7 77.9 2 11 0.24 4.2e+02 1.7 3.1 2 23 150 173 149 173 0.94 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF687-203 - 691 3.7e-10 39.7 77.9 3 11 0.13 2.4e+02 2.5 2.0 1 19 261 279 258 282 0.90 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF687-203 - 691 3.7e-10 39.7 77.9 4 11 0.00038 0.69 10.5 1.8 2 23 294 315 294 315 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF687-203 - 691 3.7e-10 39.7 77.9 5 11 0.01 18 6.0 0.9 1 21 321 340 321 345 0.92 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF687-203 - 691 3.7e-10 39.7 77.9 6 11 0.0018 3.2 8.4 0.1 1 23 352 375 352 375 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF687-203 - 691 3.7e-10 39.7 77.9 7 11 0.0023 4.2 8.0 0.9 1 22 380 401 380 403 0.78 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF687-203 - 691 3.7e-10 39.7 77.9 8 11 4.9e-05 0.088 13.3 2.0 1 23 415 437 415 437 0.93 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF687-203 - 691 3.7e-10 39.7 77.9 9 11 0.0044 7.9 7.2 0.5 1 23 446 469 446 469 0.95 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF687-203 - 691 3.7e-10 39.7 77.9 10 11 0.0063 11 6.7 0.3 2 23 552 574 551 574 0.95 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF687-203 - 691 3.7e-10 39.7 77.9 11 11 2.7e-06 0.0048 17.3 1.9 1 23 581 604 581 604 0.97 Zinc finger, C2H2 type # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF687-203.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF687-203.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF687-203.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF687-203.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF687-203.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:12:27 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-C2H2_11 PF16622.5 29 ZNF687-204 - 113 5.5e-16 58.0 0.4 1 2 2.5e-19 5.5e-16 58.0 0.4 3 29 9 35 7 35 0.95 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF687-204 - 113 5.5e-16 58.0 0.4 2 2 0.097 2.2e+02 1.7 0.8 7 24 78 95 75 98 0.71 zinc-finger C2H2-type zf-C2H2 PF00096.26 23 ZNF687-204 - 113 2.1e-08 34.2 10.2 1 2 9.2e-07 0.0021 18.4 0.9 2 23 12 34 11 34 0.93 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF687-204 - 113 2.1e-08 34.2 10.2 2 2 2.1e-07 0.00048 20.4 2.7 2 23 77 98 76 98 0.97 Zinc finger, C2H2 type # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF687-204.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF687-204.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF687-204.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF687-204.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF687-204.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:12:27 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF687-205.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF687-205.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF687-205.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF687-205.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF687-205.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:12:28 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF687-206.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF687-206.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF687-206.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF687-206.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF687-206.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:12:28 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-C2H2_4 PF13894.6 24 ZNF687-207 - 137 1.7e-09 37.7 19.4 1 4 0.0013 1.1 10.2 1.5 2 23 19 40 18 41 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF687-207 - 137 1.7e-09 37.7 19.4 2 4 0.0007 0.63 11.0 0.1 1 21 46 65 46 66 0.88 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF687-207 - 137 1.7e-09 37.7 19.4 3 4 1.9e-05 0.017 15.9 0.2 1 24 77 100 77 100 0.97 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF687-207 - 137 1.7e-09 37.7 19.4 4 4 0.00049 0.44 11.5 1.4 1 24 105 128 105 128 0.88 C2H2-type zinc finger zf-C2H2 PF00096.26 23 ZNF687-207 - 137 1.2e-07 31.7 21.4 1 4 9.3e-05 0.084 13.4 1.8 2 23 19 40 19 40 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF687-207 - 137 1.2e-07 31.7 21.4 2 4 0.0024 2.2 8.9 0.9 1 21 46 65 46 70 0.92 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF687-207 - 137 1.2e-07 31.7 21.4 3 4 0.00042 0.38 11.3 0.1 1 23 77 100 77 100 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF687-207 - 137 1.2e-07 31.7 21.4 4 4 0.00059 0.53 10.9 0.9 1 23 105 128 105 128 0.80 Zinc finger, C2H2 type # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF687-207.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF687-207.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF687-207.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF687-207.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF687-207.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:12:28 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-C2H2 PF00096.26 23 ZNF691-201 - 315 4.5e-44 146.5 56.7 1 7 1.3e-08 5.2e-06 26.6 0.8 1 23 115 137 115 137 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF691-201 - 315 4.5e-44 146.5 56.7 2 7 1.5e-08 6.2e-06 26.4 1.5 1 23 143 165 143 165 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF691-201 - 315 4.5e-44 146.5 56.7 3 7 3.7e-08 1.5e-05 25.1 2.0 1 23 171 193 171 193 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF691-201 - 315 4.5e-44 146.5 56.7 4 7 5.3e-09 2.2e-06 27.8 1.2 1 23 199 221 199 221 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF691-201 - 315 4.5e-44 146.5 56.7 5 7 1.7e-06 0.00069 19.9 4.5 1 23 227 249 227 249 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF691-201 - 315 4.5e-44 146.5 56.7 6 7 6.8e-08 2.8e-05 24.3 0.3 1 23 255 277 255 277 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF691-201 - 315 4.5e-44 146.5 56.7 7 7 1.6e-09 6.4e-07 29.5 4.0 1 23 283 305 283 305 0.99 Zinc finger, C2H2 type zf-H2C2_2 PF13465.6 26 ZNF691-201 - 315 6.2e-38 127.6 54.3 1 8 0.0076 3.1 8.4 0.5 12 26 112 126 105 126 0.88 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF691-201 - 315 6.2e-38 127.6 54.3 2 8 1.1e-12 4.6e-10 39.5 1.0 1 25 129 153 129 154 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF691-201 - 315 6.2e-38 127.6 54.3 3 8 2.5e-06 0.001 19.4 3.2 4 25 160 181 157 182 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF691-201 - 315 6.2e-38 127.6 54.3 4 8 1.6e-08 6.7e-06 26.3 0.1 1 25 185 209 185 210 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF691-201 - 315 6.2e-38 127.6 54.3 5 8 0.0093 3.8 8.1 1.5 4 26 216 238 214 238 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF691-201 - 315 6.2e-38 127.6 54.3 6 8 2.6e-08 1e-05 25.7 1.8 5 25 245 265 244 266 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF691-201 - 315 6.2e-38 127.6 54.3 7 8 8.9e-09 3.6e-06 27.1 2.4 4 25 272 293 269 294 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF691-201 - 315 6.2e-38 127.6 54.3 8 8 0.059 24 5.6 0.1 1 12 297 308 297 310 0.91 Zinc-finger double domain zf-C2H2_4 PF13894.6 24 ZNF691-201 - 315 1.4e-29 100.2 49.7 1 7 3.9e-06 0.0016 19.1 0.4 1 23 115 137 115 138 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF691-201 - 315 1.4e-29 100.2 49.7 2 7 3.3e-05 0.014 16.2 0.9 1 23 143 165 143 166 0.90 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF691-201 - 315 1.4e-29 100.2 49.7 3 7 1.5e-05 0.006 17.3 1.1 1 23 171 193 171 194 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF691-201 - 315 1.4e-29 100.2 49.7 4 7 2.2e-06 0.00089 19.9 0.9 1 23 199 221 199 222 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF691-201 - 315 1.4e-29 100.2 49.7 5 7 2.7e-05 0.011 16.5 4.0 1 23 227 249 227 250 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF691-201 - 315 1.4e-29 100.2 49.7 6 7 2.2e-06 0.0009 19.9 0.3 1 23 255 277 255 278 0.97 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF691-201 - 315 1.4e-29 100.2 49.7 7 7 6.4e-07 0.00026 21.6 2.5 1 23 283 305 283 306 0.96 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF691-201 - 315 7.7e-19 67.2 48.6 1 7 4.5e-05 0.018 15.0 0.2 2 24 115 137 115 140 0.91 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF691-201 - 315 7.7e-19 67.2 48.6 2 7 0.00029 0.12 12.4 1.7 2 12 143 153 143 154 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF691-201 - 315 7.7e-19 67.2 48.6 3 7 0.0012 0.47 10.5 1.6 1 24 170 193 170 196 0.88 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF691-201 - 315 7.7e-19 67.2 48.6 4 7 0.00011 0.046 13.7 0.2 2 12 199 209 199 224 0.82 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF691-201 - 315 7.7e-19 67.2 48.6 5 7 0.042 17 5.5 3.7 2 24 227 249 227 252 0.75 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF691-201 - 315 7.7e-19 67.2 48.6 6 7 5.8e-07 0.00024 21.0 0.3 2 26 255 279 255 280 0.96 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF691-201 - 315 7.7e-19 67.2 48.6 7 7 7.5e-06 0.0031 17.5 2.2 2 25 283 306 283 308 0.95 C2H2-type zinc finger zf-C2H2_jaz PF12171.8 27 ZNF691-201 - 315 3.4e-18 65.4 26.6 1 7 8.4e-05 0.034 14.4 0.1 2 22 115 135 114 135 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF691-201 - 315 3.4e-18 65.4 26.6 2 7 0.0049 2 8.8 0.0 2 22 143 163 142 163 0.90 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF691-201 - 315 3.4e-18 65.4 26.6 3 7 0.29 1.2e+02 3.2 0.6 2 21 171 190 170 191 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF691-201 - 315 3.4e-18 65.4 26.6 4 7 0.012 4.8 7.6 0.1 2 20 199 217 198 222 0.85 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF691-201 - 315 3.4e-18 65.4 26.6 5 7 0.00078 0.32 11.4 1.3 2 20 227 245 226 249 0.89 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF691-201 - 315 3.4e-18 65.4 26.6 6 7 1.5e-05 0.0062 16.8 0.0 2 24 255 277 254 278 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF691-201 - 315 3.4e-18 65.4 26.6 7 7 6.4e-06 0.0026 18.0 0.3 2 24 283 305 282 306 0.94 Zinc-finger double-stranded RNA-binding Zn-ribbon_8 PF09723.10 40 ZNF691-201 - 315 2.6e-10 40.2 31.1 1 5 6e-05 0.024 14.7 2.4 6 38 115 154 114 154 0.89 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF691-201 - 315 2.6e-10 40.2 31.1 2 5 1.1e-05 0.0045 17.1 5.5 6 38 143 182 141 184 0.90 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF691-201 - 315 2.6e-10 40.2 31.1 3 5 0.00014 0.056 13.6 2.4 6 34 199 234 198 241 0.86 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF691-201 - 315 2.6e-10 40.2 31.1 4 5 2.8e-05 0.011 15.8 3.7 6 38 255 294 254 295 0.91 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF691-201 - 315 2.6e-10 40.2 31.1 5 5 0.0066 2.7 8.2 0.2 6 17 283 294 282 305 0.81 Zinc ribbon domain zf_UBZ PF18439.1 32 ZNF691-201 - 315 7.4e-10 38.2 25.7 1 7 0.0037 1.5 8.5 0.1 3 20 115 133 113 134 0.82 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF691-201 - 315 7.4e-10 38.2 25.7 2 7 0.00094 0.38 10.4 0.2 3 15 143 155 141 162 0.80 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF691-201 - 315 7.4e-10 38.2 25.7 3 7 0.0031 1.3 8.7 0.7 2 21 170 190 169 190 0.88 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF691-201 - 315 7.4e-10 38.2 25.7 4 7 0.0046 1.9 8.2 0.1 3 15 199 211 197 218 0.83 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF691-201 - 315 7.4e-10 38.2 25.7 5 7 0.022 9 6.0 0.4 3 15 227 239 225 246 0.83 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF691-201 - 315 7.4e-10 38.2 25.7 6 7 0.017 6.8 6.4 0.1 3 20 255 273 253 274 0.78 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF691-201 - 315 7.4e-10 38.2 25.7 7 7 0.055 23 4.7 0.1 3 15 283 295 281 302 0.80 Ubiquitin-Binding Zinc Finger # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF691-201.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF691-201.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF691-201.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF691-201.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF691-201.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:12:29 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF691-202.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF691-202.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF691-202.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF691-202.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF691-202.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:12:29 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-C2H2 PF00096.26 23 ZNF691-203 - 306 3.6e-44 146.8 56.7 1 7 1.3e-08 5.1e-06 26.7 0.8 1 23 106 128 106 128 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF691-203 - 306 3.6e-44 146.8 56.7 2 7 1.5e-08 6e-06 26.4 1.5 1 23 134 156 134 156 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF691-203 - 306 3.6e-44 146.8 56.7 3 7 3.7e-08 1.5e-05 25.2 2.0 1 23 162 184 162 184 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF691-203 - 306 3.6e-44 146.8 56.7 4 7 5.2e-09 2.1e-06 27.9 1.2 1 23 190 212 190 212 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF691-203 - 306 3.6e-44 146.8 56.7 5 7 1.7e-06 0.00067 20.0 4.5 1 23 218 240 218 240 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF691-203 - 306 3.6e-44 146.8 56.7 6 7 6.7e-08 2.7e-05 24.4 0.3 1 23 246 268 246 268 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF691-203 - 306 3.6e-44 146.8 56.7 7 7 1.6e-09 6.2e-07 29.5 4.0 1 23 274 296 274 296 0.99 Zinc finger, C2H2 type zf-H2C2_2 PF13465.6 26 ZNF691-203 - 306 4.7e-38 127.9 54.3 1 8 0.0075 3 8.4 0.5 12 26 103 117 96 117 0.88 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF691-203 - 306 4.7e-38 127.9 54.3 2 8 1.1e-12 4.4e-10 39.5 1.0 1 25 120 144 120 145 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF691-203 - 306 4.7e-38 127.9 54.3 3 8 2.5e-06 0.00098 19.4 3.2 4 25 151 172 148 173 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF691-203 - 306 4.7e-38 127.9 54.3 4 8 1.6e-08 6.4e-06 26.4 0.1 1 25 176 200 176 201 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF691-203 - 306 4.7e-38 127.9 54.3 5 8 0.0091 3.6 8.2 1.5 4 26 207 229 205 229 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF691-203 - 306 4.7e-38 127.9 54.3 6 8 2.5e-08 1e-05 25.7 1.8 5 25 236 256 235 257 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF691-203 - 306 4.7e-38 127.9 54.3 7 8 8.7e-09 3.5e-06 27.2 2.4 4 25 263 284 260 285 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF691-203 - 306 4.7e-38 127.9 54.3 8 8 0.058 23 5.6 0.1 1 12 288 299 288 301 0.91 Zinc-finger double domain zf-C2H2_4 PF13894.6 24 ZNF691-203 - 306 1.2e-29 100.4 49.7 1 7 3.9e-06 0.0015 19.2 0.4 1 23 106 128 106 129 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF691-203 - 306 1.2e-29 100.4 49.7 2 7 3.3e-05 0.013 16.3 0.9 1 23 134 156 134 157 0.90 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF691-203 - 306 1.2e-29 100.4 49.7 3 7 1.4e-05 0.0058 17.4 1.1 1 23 162 184 162 185 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF691-203 - 306 1.2e-29 100.4 49.7 4 7 2.2e-06 0.00086 19.9 0.9 1 23 190 212 190 213 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF691-203 - 306 1.2e-29 100.4 49.7 5 7 2.6e-05 0.01 16.6 4.0 1 23 218 240 218 241 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF691-203 - 306 1.2e-29 100.4 49.7 6 7 2.2e-06 0.00087 19.9 0.3 1 23 246 268 246 269 0.97 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF691-203 - 306 1.2e-29 100.4 49.7 7 7 6.3e-07 0.00025 21.6 2.5 1 23 274 296 274 297 0.96 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF691-203 - 306 6.1e-19 67.6 48.6 1 7 4.5e-05 0.018 15.0 0.2 2 24 106 128 106 131 0.91 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF691-203 - 306 6.1e-19 67.6 48.6 2 7 0.00028 0.11 12.5 1.7 2 12 134 144 134 145 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF691-203 - 306 6.1e-19 67.6 48.6 3 7 0.0011 0.45 10.6 1.6 1 24 161 184 161 187 0.88 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF691-203 - 306 6.1e-19 67.6 48.6 4 7 0.00011 0.045 13.8 0.2 2 12 190 200 190 215 0.82 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF691-203 - 306 6.1e-19 67.6 48.6 5 7 0.041 16 5.6 3.7 2 24 218 240 218 243 0.75 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF691-203 - 306 6.1e-19 67.6 48.6 6 7 5.7e-07 0.00023 21.1 0.3 2 26 246 270 246 271 0.96 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF691-203 - 306 6.1e-19 67.6 48.6 7 7 7.4e-06 0.0029 17.5 2.2 2 25 274 297 274 299 0.95 C2H2-type zinc finger zf-C2H2_jaz PF12171.8 27 ZNF691-203 - 306 2.7e-18 65.8 26.6 1 7 8.3e-05 0.033 14.5 0.1 2 22 106 126 105 126 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF691-203 - 306 2.7e-18 65.8 26.6 2 7 0.0048 1.9 8.9 0.0 2 22 134 154 133 154 0.90 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF691-203 - 306 2.7e-18 65.8 26.6 3 7 0.29 1.1e+02 3.2 0.6 2 21 162 181 161 182 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF691-203 - 306 2.7e-18 65.8 26.6 4 7 0.012 4.6 7.6 0.1 2 20 190 208 189 213 0.85 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF691-203 - 306 2.7e-18 65.8 26.6 5 7 0.00077 0.31 11.4 1.3 2 20 218 236 217 240 0.89 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF691-203 - 306 2.7e-18 65.8 26.6 6 7 1.5e-05 0.006 16.8 0.0 2 24 246 268 245 269 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF691-203 - 306 2.7e-18 65.8 26.6 7 7 6.3e-06 0.0025 18.0 0.3 2 24 274 296 273 297 0.94 Zinc-finger double-stranded RNA-binding Zn-ribbon_8 PF09723.10 40 ZNF691-203 - 306 2.2e-10 40.5 31.0 1 5 5.9e-05 0.024 14.8 2.4 6 38 106 145 105 145 0.90 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF691-203 - 306 2.2e-10 40.5 31.0 2 5 1.1e-05 0.0043 17.1 5.5 6 38 134 173 132 175 0.90 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF691-203 - 306 2.2e-10 40.5 31.0 3 5 0.00014 0.055 13.6 2.4 6 34 190 225 189 229 0.85 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF691-203 - 306 2.2e-10 40.5 31.0 4 5 2.8e-05 0.011 15.8 3.8 6 38 246 285 245 286 0.91 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF691-203 - 306 2.2e-10 40.5 31.0 5 5 0.0066 2.6 8.2 0.2 6 17 274 285 273 296 0.81 Zinc ribbon domain zf_UBZ PF18439.1 32 ZNF691-203 - 306 5.9e-10 38.6 25.7 1 7 0.0036 1.4 8.5 0.1 3 20 106 124 104 125 0.82 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF691-203 - 306 5.9e-10 38.6 25.7 2 7 0.00093 0.37 10.4 0.2 3 15 134 146 132 153 0.80 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF691-203 - 306 5.9e-10 38.6 25.7 3 7 0.0031 1.2 8.8 0.7 2 21 161 181 160 181 0.88 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF691-203 - 306 5.9e-10 38.6 25.7 4 7 0.0045 1.8 8.2 0.1 3 15 190 202 188 209 0.83 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF691-203 - 306 5.9e-10 38.6 25.7 5 7 0.022 8.7 6.0 0.4 3 15 218 230 216 237 0.83 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF691-203 - 306 5.9e-10 38.6 25.7 6 7 0.016 6.5 6.4 0.1 3 20 246 264 244 265 0.78 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF691-203 - 306 5.9e-10 38.6 25.7 7 7 0.055 22 4.8 0.1 3 15 274 286 272 293 0.80 Ubiquitin-Binding Zinc Finger # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF691-203.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF691-203.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF691-203.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF691-203.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF691-203.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:12:30 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-C2H2 PF00096.26 23 ZNF691-204 - 315 4.5e-44 146.5 56.7 1 7 1.3e-08 5.2e-06 26.6 0.8 1 23 115 137 115 137 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF691-204 - 315 4.5e-44 146.5 56.7 2 7 1.5e-08 6.2e-06 26.4 1.5 1 23 143 165 143 165 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF691-204 - 315 4.5e-44 146.5 56.7 3 7 3.7e-08 1.5e-05 25.1 2.0 1 23 171 193 171 193 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF691-204 - 315 4.5e-44 146.5 56.7 4 7 5.3e-09 2.2e-06 27.8 1.2 1 23 199 221 199 221 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF691-204 - 315 4.5e-44 146.5 56.7 5 7 1.7e-06 0.00069 19.9 4.5 1 23 227 249 227 249 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF691-204 - 315 4.5e-44 146.5 56.7 6 7 6.8e-08 2.8e-05 24.3 0.3 1 23 255 277 255 277 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF691-204 - 315 4.5e-44 146.5 56.7 7 7 1.6e-09 6.4e-07 29.5 4.0 1 23 283 305 283 305 0.99 Zinc finger, C2H2 type zf-H2C2_2 PF13465.6 26 ZNF691-204 - 315 6.2e-38 127.6 54.3 1 8 0.0076 3.1 8.4 0.5 12 26 112 126 105 126 0.88 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF691-204 - 315 6.2e-38 127.6 54.3 2 8 1.1e-12 4.6e-10 39.5 1.0 1 25 129 153 129 154 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF691-204 - 315 6.2e-38 127.6 54.3 3 8 2.5e-06 0.001 19.4 3.2 4 25 160 181 157 182 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF691-204 - 315 6.2e-38 127.6 54.3 4 8 1.6e-08 6.7e-06 26.3 0.1 1 25 185 209 185 210 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF691-204 - 315 6.2e-38 127.6 54.3 5 8 0.0093 3.8 8.1 1.5 4 26 216 238 214 238 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF691-204 - 315 6.2e-38 127.6 54.3 6 8 2.6e-08 1e-05 25.7 1.8 5 25 245 265 244 266 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF691-204 - 315 6.2e-38 127.6 54.3 7 8 8.9e-09 3.6e-06 27.1 2.4 4 25 272 293 269 294 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF691-204 - 315 6.2e-38 127.6 54.3 8 8 0.059 24 5.6 0.1 1 12 297 308 297 310 0.91 Zinc-finger double domain zf-C2H2_4 PF13894.6 24 ZNF691-204 - 315 1.4e-29 100.2 49.7 1 7 3.9e-06 0.0016 19.1 0.4 1 23 115 137 115 138 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF691-204 - 315 1.4e-29 100.2 49.7 2 7 3.3e-05 0.014 16.2 0.9 1 23 143 165 143 166 0.90 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF691-204 - 315 1.4e-29 100.2 49.7 3 7 1.5e-05 0.006 17.3 1.1 1 23 171 193 171 194 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF691-204 - 315 1.4e-29 100.2 49.7 4 7 2.2e-06 0.00089 19.9 0.9 1 23 199 221 199 222 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF691-204 - 315 1.4e-29 100.2 49.7 5 7 2.7e-05 0.011 16.5 4.0 1 23 227 249 227 250 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF691-204 - 315 1.4e-29 100.2 49.7 6 7 2.2e-06 0.0009 19.9 0.3 1 23 255 277 255 278 0.97 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF691-204 - 315 1.4e-29 100.2 49.7 7 7 6.4e-07 0.00026 21.6 2.5 1 23 283 305 283 306 0.96 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF691-204 - 315 7.7e-19 67.2 48.6 1 7 4.5e-05 0.018 15.0 0.2 2 24 115 137 115 140 0.91 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF691-204 - 315 7.7e-19 67.2 48.6 2 7 0.00029 0.12 12.4 1.7 2 12 143 153 143 154 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF691-204 - 315 7.7e-19 67.2 48.6 3 7 0.0012 0.47 10.5 1.6 1 24 170 193 170 196 0.88 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF691-204 - 315 7.7e-19 67.2 48.6 4 7 0.00011 0.046 13.7 0.2 2 12 199 209 199 224 0.82 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF691-204 - 315 7.7e-19 67.2 48.6 5 7 0.042 17 5.5 3.7 2 24 227 249 227 252 0.75 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF691-204 - 315 7.7e-19 67.2 48.6 6 7 5.8e-07 0.00024 21.0 0.3 2 26 255 279 255 280 0.96 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF691-204 - 315 7.7e-19 67.2 48.6 7 7 7.5e-06 0.0031 17.5 2.2 2 25 283 306 283 308 0.95 C2H2-type zinc finger zf-C2H2_jaz PF12171.8 27 ZNF691-204 - 315 3.4e-18 65.4 26.6 1 7 8.4e-05 0.034 14.4 0.1 2 22 115 135 114 135 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF691-204 - 315 3.4e-18 65.4 26.6 2 7 0.0049 2 8.8 0.0 2 22 143 163 142 163 0.90 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF691-204 - 315 3.4e-18 65.4 26.6 3 7 0.29 1.2e+02 3.2 0.6 2 21 171 190 170 191 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF691-204 - 315 3.4e-18 65.4 26.6 4 7 0.012 4.8 7.6 0.1 2 20 199 217 198 222 0.85 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF691-204 - 315 3.4e-18 65.4 26.6 5 7 0.00078 0.32 11.4 1.3 2 20 227 245 226 249 0.89 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF691-204 - 315 3.4e-18 65.4 26.6 6 7 1.5e-05 0.0062 16.8 0.0 2 24 255 277 254 278 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF691-204 - 315 3.4e-18 65.4 26.6 7 7 6.4e-06 0.0026 18.0 0.3 2 24 283 305 282 306 0.94 Zinc-finger double-stranded RNA-binding Zn-ribbon_8 PF09723.10 40 ZNF691-204 - 315 2.6e-10 40.2 31.1 1 5 6e-05 0.024 14.7 2.4 6 38 115 154 114 154 0.89 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF691-204 - 315 2.6e-10 40.2 31.1 2 5 1.1e-05 0.0045 17.1 5.5 6 38 143 182 141 184 0.90 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF691-204 - 315 2.6e-10 40.2 31.1 3 5 0.00014 0.056 13.6 2.4 6 34 199 234 198 241 0.86 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF691-204 - 315 2.6e-10 40.2 31.1 4 5 2.8e-05 0.011 15.8 3.7 6 38 255 294 254 295 0.91 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF691-204 - 315 2.6e-10 40.2 31.1 5 5 0.0066 2.7 8.2 0.2 6 17 283 294 282 305 0.81 Zinc ribbon domain zf_UBZ PF18439.1 32 ZNF691-204 - 315 7.4e-10 38.2 25.7 1 7 0.0037 1.5 8.5 0.1 3 20 115 133 113 134 0.82 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF691-204 - 315 7.4e-10 38.2 25.7 2 7 0.00094 0.38 10.4 0.2 3 15 143 155 141 162 0.80 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF691-204 - 315 7.4e-10 38.2 25.7 3 7 0.0031 1.3 8.7 0.7 2 21 170 190 169 190 0.88 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF691-204 - 315 7.4e-10 38.2 25.7 4 7 0.0046 1.9 8.2 0.1 3 15 199 211 197 218 0.83 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF691-204 - 315 7.4e-10 38.2 25.7 5 7 0.022 9 6.0 0.4 3 15 227 239 225 246 0.83 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF691-204 - 315 7.4e-10 38.2 25.7 6 7 0.017 6.8 6.4 0.1 3 20 255 273 253 274 0.78 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF691-204 - 315 7.4e-10 38.2 25.7 7 7 0.055 23 4.7 0.1 3 15 283 295 281 302 0.80 Ubiquitin-Binding Zinc Finger # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF691-204.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF691-204.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF691-204.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF691-204.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF691-204.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:12:30 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-C2H2 PF00096.26 23 ZNF691-205 - 311 3.6e-44 146.8 56.7 1 7 1.3e-08 5.2e-06 26.6 0.8 1 23 111 133 111 133 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF691-205 - 311 3.6e-44 146.8 56.7 2 7 1.5e-08 6.1e-06 26.4 1.5 1 23 139 161 139 161 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF691-205 - 311 3.6e-44 146.8 56.7 3 7 3.7e-08 1.5e-05 25.2 2.0 1 23 167 189 167 189 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF691-205 - 311 3.6e-44 146.8 56.7 4 7 5.2e-09 2.1e-06 27.8 1.2 1 23 195 217 195 217 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF691-205 - 311 3.6e-44 146.8 56.7 5 7 1.7e-06 0.00068 19.9 4.5 1 23 223 245 223 245 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF691-205 - 311 3.6e-44 146.8 56.7 6 7 6.6e-08 2.7e-05 24.4 0.3 1 23 251 273 251 273 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF691-205 - 311 3.6e-44 146.8 56.7 7 7 1.6e-09 6.3e-07 29.5 4.0 1 23 279 301 279 301 0.99 Zinc finger, C2H2 type zf-H2C2_2 PF13465.6 26 ZNF691-205 - 311 5.2e-38 127.8 54.3 1 8 0.0075 3.1 8.4 0.5 12 26 108 122 101 122 0.88 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF691-205 - 311 5.2e-38 127.8 54.3 2 8 1.1e-12 4.5e-10 39.5 1.0 1 25 125 149 125 150 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF691-205 - 311 5.2e-38 127.8 54.3 3 8 2.5e-06 0.001 19.4 3.2 4 25 156 177 153 178 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF691-205 - 311 5.2e-38 127.8 54.3 4 8 1.6e-08 6.5e-06 26.3 0.1 1 25 181 205 181 206 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF691-205 - 311 5.2e-38 127.8 54.3 5 8 0.0091 3.7 8.1 1.5 4 26 212 234 210 234 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF691-205 - 311 5.2e-38 127.8 54.3 6 8 2.5e-08 1e-05 25.7 1.8 5 25 241 261 240 262 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF691-205 - 311 5.2e-38 127.8 54.3 7 8 8.7e-09 3.6e-06 27.2 2.4 4 25 268 289 265 290 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF691-205 - 311 5.2e-38 127.8 54.3 8 8 0.058 24 5.6 0.1 1 12 293 304 293 306 0.91 Zinc-finger double domain zf-C2H2_4 PF13894.6 24 ZNF691-205 - 311 1.2e-29 100.4 49.7 1 7 3.9e-06 0.0016 19.1 0.4 1 23 111 133 111 134 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF691-205 - 311 1.2e-29 100.4 49.7 2 7 3.3e-05 0.013 16.2 0.9 1 23 139 161 139 162 0.90 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF691-205 - 311 1.2e-29 100.4 49.7 3 7 1.4e-05 0.0059 17.4 1.1 1 23 167 189 167 190 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF691-205 - 311 1.2e-29 100.4 49.7 4 7 2.2e-06 0.00088 19.9 0.9 1 23 195 217 195 218 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF691-205 - 311 1.2e-29 100.4 49.7 5 7 2.6e-05 0.011 16.5 4.0 1 23 223 245 223 246 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF691-205 - 311 1.2e-29 100.4 49.7 6 7 2.2e-06 0.00089 19.9 0.3 1 23 251 273 251 274 0.97 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF691-205 - 311 1.2e-29 100.4 49.7 7 7 6.2e-07 0.00025 21.6 2.5 1 23 279 301 279 302 0.96 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF691-205 - 311 6.3e-19 67.5 48.6 1 7 4.5e-05 0.018 15.0 0.2 2 24 111 133 111 136 0.91 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF691-205 - 311 6.3e-19 67.5 48.6 2 7 0.00028 0.11 12.5 1.7 2 12 139 149 139 150 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF691-205 - 311 6.3e-19 67.5 48.6 3 7 0.0011 0.46 10.5 1.6 1 24 166 189 166 192 0.88 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF691-205 - 311 6.3e-19 67.5 48.6 4 7 0.00011 0.046 13.7 0.2 2 12 195 205 195 220 0.82 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF691-205 - 311 6.3e-19 67.5 48.6 5 7 0.041 17 5.6 3.7 2 24 223 245 223 248 0.75 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF691-205 - 311 6.3e-19 67.5 48.6 6 7 5.7e-07 0.00023 21.1 0.3 2 26 251 275 251 276 0.96 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF691-205 - 311 6.3e-19 67.5 48.6 7 7 7.4e-06 0.003 17.5 2.2 2 25 279 302 279 304 0.95 C2H2-type zinc finger zf-C2H2_jaz PF12171.8 27 ZNF691-205 - 311 3e-18 65.6 26.6 1 7 8.3e-05 0.034 14.4 0.1 2 22 111 131 110 131 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF691-205 - 311 3e-18 65.6 26.6 2 7 0.0048 1.9 8.8 0.0 2 22 139 159 138 159 0.90 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF691-205 - 311 3e-18 65.6 26.6 3 7 0.29 1.2e+02 3.2 0.6 2 21 167 186 166 187 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF691-205 - 311 3e-18 65.6 26.6 4 7 0.012 4.7 7.6 0.1 2 20 195 213 194 218 0.85 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF691-205 - 311 3e-18 65.6 26.6 5 7 0.00076 0.31 11.4 1.3 2 20 223 241 222 245 0.89 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF691-205 - 311 3e-18 65.6 26.6 6 7 1.5e-05 0.0061 16.8 0.0 2 24 251 273 250 274 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF691-205 - 311 3e-18 65.6 26.6 7 7 6.3e-06 0.0026 18.0 0.3 2 24 279 301 278 302 0.94 Zinc-finger double-stranded RNA-binding Zn-ribbon_8 PF09723.10 40 ZNF691-205 - 311 2.4e-10 40.4 31.1 1 5 5.9e-05 0.024 14.8 2.4 6 38 111 150 110 150 0.90 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF691-205 - 311 2.4e-10 40.4 31.1 2 5 1.1e-05 0.0044 17.1 5.5 6 38 139 178 137 180 0.90 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF691-205 - 311 2.4e-10 40.4 31.1 3 5 0.00014 0.055 13.6 2.4 6 34 195 230 194 237 0.86 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF691-205 - 311 2.4e-10 40.4 31.1 4 5 2.7e-05 0.011 15.8 3.7 6 38 251 290 250 291 0.91 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF691-205 - 311 2.4e-10 40.4 31.1 5 5 0.0065 2.7 8.2 0.2 6 17 279 290 278 301 0.81 Zinc ribbon domain zf_UBZ PF18439.1 32 ZNF691-205 - 311 6.8e-10 38.4 25.7 1 7 0.0036 1.5 8.5 0.1 3 20 111 129 109 130 0.82 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF691-205 - 311 6.8e-10 38.4 25.7 2 7 0.00093 0.38 10.4 0.2 3 15 139 151 137 158 0.80 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF691-205 - 311 6.8e-10 38.4 25.7 3 7 0.0031 1.2 8.7 0.7 2 21 166 186 165 186 0.88 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF691-205 - 311 6.8e-10 38.4 25.7 4 7 0.0045 1.8 8.2 0.1 3 15 195 207 193 214 0.83 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF691-205 - 311 6.8e-10 38.4 25.7 5 7 0.022 8.9 6.0 0.4 3 15 223 235 221 242 0.83 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF691-205 - 311 6.8e-10 38.4 25.7 6 7 0.016 6.7 6.4 0.1 3 20 251 269 249 270 0.78 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF691-205 - 311 6.8e-10 38.4 25.7 7 7 0.054 22 4.7 0.1 3 15 279 291 277 298 0.80 Ubiquitin-Binding Zinc Finger # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF691-205.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF691-205.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF691-205.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF691-205.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF691-205.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:12:31 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-C2H2 PF00096.26 23 ZNF691-206 - 284 1.9e-44 147.7 56.7 1 7 1.2e-08 4.6e-06 26.8 0.8 1 23 84 106 84 106 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF691-206 - 284 1.9e-44 147.7 56.7 2 7 1.4e-08 5.5e-06 26.6 1.5 1 23 112 134 112 134 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF691-206 - 284 1.9e-44 147.7 56.7 3 7 3.4e-08 1.3e-05 25.3 2.0 1 23 140 162 140 162 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF691-206 - 284 1.9e-44 147.7 56.7 4 7 4.9e-09 1.9e-06 28.0 1.2 1 23 168 190 168 190 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF691-206 - 284 1.9e-44 147.7 56.7 5 7 1.6e-06 0.00061 20.1 4.5 1 23 196 218 196 218 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF691-206 - 284 1.9e-44 147.7 56.7 6 7 6.2e-08 2.4e-05 24.5 0.3 1 23 224 246 224 246 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF691-206 - 284 1.9e-44 147.7 56.7 7 7 1.4e-09 5.6e-07 29.7 4.0 1 23 252 274 252 274 0.99 Zinc finger, C2H2 type zf-H2C2_2 PF13465.6 26 ZNF691-206 - 284 2.2e-38 129.0 54.3 1 8 0.007 2.7 8.6 0.5 12 26 81 95 74 95 0.88 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF691-206 - 284 2.2e-38 129.0 54.3 2 8 1e-12 4e-10 39.6 1.0 1 25 98 122 98 123 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF691-206 - 284 2.2e-38 129.0 54.3 3 8 2.3e-06 0.00089 19.6 3.2 4 25 129 150 126 151 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF691-206 - 284 2.2e-38 129.0 54.3 4 8 1.5e-08 5.8e-06 26.5 0.1 1 25 154 178 154 179 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF691-206 - 284 2.2e-38 129.0 54.3 5 8 0.0085 3.3 8.3 1.5 4 26 185 207 183 207 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF691-206 - 284 2.2e-38 129.0 54.3 6 8 2.3e-08 9.1e-06 25.9 1.8 5 25 214 234 213 235 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF691-206 - 284 2.2e-38 129.0 54.3 7 8 8.1e-09 3.2e-06 27.3 2.4 4 25 241 262 238 263 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF691-206 - 284 2.2e-38 129.0 54.3 8 8 0.055 21 5.7 0.1 1 12 266 277 266 279 0.91 Zinc-finger double domain zf-C2H2_4 PF13894.6 24 ZNF691-206 - 284 6.1e-30 101.3 49.7 1 7 3.6e-06 0.0014 19.3 0.4 1 23 84 106 84 107 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF691-206 - 284 6.1e-30 101.3 49.7 2 7 3e-05 0.012 16.4 0.9 1 23 112 134 112 135 0.90 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF691-206 - 284 6.1e-30 101.3 49.7 3 7 1.3e-05 0.0052 17.5 1.1 1 23 140 162 140 163 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF691-206 - 284 6.1e-30 101.3 49.7 4 7 2e-06 0.00078 20.1 0.9 1 23 168 190 168 191 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF691-206 - 284 6.1e-30 101.3 49.7 5 7 2.4e-05 0.0095 16.7 4.0 1 23 196 218 196 219 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF691-206 - 284 6.1e-30 101.3 49.7 6 7 2e-06 0.00079 20.1 0.3 1 23 224 246 224 247 0.97 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF691-206 - 284 6.1e-30 101.3 49.7 7 7 5.8e-07 0.00023 21.8 2.5 1 23 252 274 252 275 0.96 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF691-206 - 284 3.2e-19 68.4 48.6 1 7 4.2e-05 0.016 15.2 0.2 2 24 84 106 84 109 0.91 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF691-206 - 284 3.2e-19 68.4 48.6 2 7 0.00027 0.1 12.6 1.7 2 12 112 122 112 123 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF691-206 - 284 3.2e-19 68.4 48.6 3 7 0.0011 0.41 10.7 1.6 1 24 139 162 139 165 0.88 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF691-206 - 284 3.2e-19 68.4 48.6 4 7 0.0001 0.041 13.9 0.2 2 12 168 178 168 193 0.82 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF691-206 - 284 3.2e-19 68.4 48.6 5 7 0.038 15 5.7 3.7 2 24 196 218 196 221 0.75 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF691-206 - 284 3.2e-19 68.4 48.6 6 7 5.3e-07 0.00021 21.2 0.3 2 26 224 248 224 249 0.96 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF691-206 - 284 3.2e-19 68.4 48.6 7 7 6.9e-06 0.0027 17.7 2.2 2 25 252 275 252 277 0.95 C2H2-type zinc finger zf-C2H2_jaz PF12171.8 27 ZNF691-206 - 284 1.4e-18 66.6 26.6 1 7 7.7e-05 0.03 14.6 0.1 2 22 84 104 83 104 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF691-206 - 284 1.4e-18 66.6 26.6 2 7 0.0045 1.7 9.0 0.0 2 22 112 132 111 132 0.90 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF691-206 - 284 1.4e-18 66.6 26.6 3 7 0.27 1e+02 3.3 0.6 2 21 140 159 139 160 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF691-206 - 284 1.4e-18 66.6 26.6 4 7 0.011 4.2 7.8 0.1 2 20 168 186 167 191 0.85 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF691-206 - 284 1.4e-18 66.6 26.6 5 7 0.00071 0.28 11.5 1.3 2 20 196 214 195 218 0.89 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF691-206 - 284 1.4e-18 66.6 26.6 6 7 1.4e-05 0.0055 17.0 0.0 2 24 224 246 223 247 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF691-206 - 284 1.4e-18 66.6 26.6 7 7 5.8e-06 0.0023 18.2 0.3 2 24 252 274 251 275 0.94 Zinc-finger double-stranded RNA-binding Zn-ribbon_8 PF09723.10 40 ZNF691-206 - 284 9.5e-11 41.6 30.6 1 5 3.8e-05 0.015 15.4 2.2 6 38 84 123 83 124 0.90 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF691-206 - 284 9.5e-11 41.6 30.6 2 5 8.7e-06 0.0034 17.5 5.4 6 38 112 151 110 153 0.90 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF691-206 - 284 9.5e-11 41.6 30.6 3 5 0.0001 0.041 14.0 2.2 6 34 168 203 167 208 0.85 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF691-206 - 284 9.5e-11 41.6 30.6 4 5 2.8e-05 0.011 15.8 3.9 6 38 224 263 223 264 0.91 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF691-206 - 284 9.5e-11 41.6 30.6 5 5 0.0062 2.4 8.3 0.2 6 17 252 263 251 274 0.81 Zinc ribbon domain zf_UBZ PF18439.1 32 ZNF691-206 - 284 3.2e-10 39.4 25.7 1 7 0.0034 1.3 8.7 0.1 3 20 84 102 82 103 0.82 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF691-206 - 284 3.2e-10 39.4 25.7 2 7 0.00087 0.34 10.5 0.2 3 15 112 124 110 131 0.80 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF691-206 - 284 3.2e-10 39.4 25.7 3 7 0.0029 1.1 8.9 0.7 2 21 139 159 138 159 0.88 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF691-206 - 284 3.2e-10 39.4 25.7 4 7 0.0042 1.6 8.3 0.1 3 15 168 180 166 187 0.83 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF691-206 - 284 3.2e-10 39.4 25.7 5 7 0.02 8 6.2 0.4 3 15 196 208 194 215 0.83 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF691-206 - 284 3.2e-10 39.4 25.7 6 7 0.015 6 6.6 0.1 3 20 224 242 222 243 0.78 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF691-206 - 284 3.2e-10 39.4 25.7 7 7 0.051 20 4.9 0.1 3 15 252 264 250 271 0.80 Ubiquitin-Binding Zinc Finger # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF691-206.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF691-206.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF691-206.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF691-206.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF691-206.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:12:31 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF691-207.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF691-207.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF691-207.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF691-207.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF691-207.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:12:32 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-C2H2 PF00096.26 23 ZNF691-208 - 284 1.9e-44 147.7 56.7 1 7 1.2e-08 4.6e-06 26.8 0.8 1 23 84 106 84 106 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF691-208 - 284 1.9e-44 147.7 56.7 2 7 1.4e-08 5.5e-06 26.6 1.5 1 23 112 134 112 134 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF691-208 - 284 1.9e-44 147.7 56.7 3 7 3.4e-08 1.3e-05 25.3 2.0 1 23 140 162 140 162 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF691-208 - 284 1.9e-44 147.7 56.7 4 7 4.9e-09 1.9e-06 28.0 1.2 1 23 168 190 168 190 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF691-208 - 284 1.9e-44 147.7 56.7 5 7 1.6e-06 0.00061 20.1 4.5 1 23 196 218 196 218 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF691-208 - 284 1.9e-44 147.7 56.7 6 7 6.2e-08 2.4e-05 24.5 0.3 1 23 224 246 224 246 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF691-208 - 284 1.9e-44 147.7 56.7 7 7 1.4e-09 5.6e-07 29.7 4.0 1 23 252 274 252 274 0.99 Zinc finger, C2H2 type zf-H2C2_2 PF13465.6 26 ZNF691-208 - 284 2.2e-38 129.0 54.3 1 8 0.007 2.7 8.6 0.5 12 26 81 95 74 95 0.88 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF691-208 - 284 2.2e-38 129.0 54.3 2 8 1e-12 4e-10 39.6 1.0 1 25 98 122 98 123 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF691-208 - 284 2.2e-38 129.0 54.3 3 8 2.3e-06 0.00089 19.6 3.2 4 25 129 150 126 151 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF691-208 - 284 2.2e-38 129.0 54.3 4 8 1.5e-08 5.8e-06 26.5 0.1 1 25 154 178 154 179 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF691-208 - 284 2.2e-38 129.0 54.3 5 8 0.0085 3.3 8.3 1.5 4 26 185 207 183 207 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF691-208 - 284 2.2e-38 129.0 54.3 6 8 2.3e-08 9.1e-06 25.9 1.8 5 25 214 234 213 235 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF691-208 - 284 2.2e-38 129.0 54.3 7 8 8.1e-09 3.2e-06 27.3 2.4 4 25 241 262 238 263 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF691-208 - 284 2.2e-38 129.0 54.3 8 8 0.055 21 5.7 0.1 1 12 266 277 266 279 0.91 Zinc-finger double domain zf-C2H2_4 PF13894.6 24 ZNF691-208 - 284 6.1e-30 101.3 49.7 1 7 3.6e-06 0.0014 19.3 0.4 1 23 84 106 84 107 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF691-208 - 284 6.1e-30 101.3 49.7 2 7 3e-05 0.012 16.4 0.9 1 23 112 134 112 135 0.90 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF691-208 - 284 6.1e-30 101.3 49.7 3 7 1.3e-05 0.0052 17.5 1.1 1 23 140 162 140 163 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF691-208 - 284 6.1e-30 101.3 49.7 4 7 2e-06 0.00078 20.1 0.9 1 23 168 190 168 191 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF691-208 - 284 6.1e-30 101.3 49.7 5 7 2.4e-05 0.0095 16.7 4.0 1 23 196 218 196 219 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF691-208 - 284 6.1e-30 101.3 49.7 6 7 2e-06 0.00079 20.1 0.3 1 23 224 246 224 247 0.97 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF691-208 - 284 6.1e-30 101.3 49.7 7 7 5.8e-07 0.00023 21.8 2.5 1 23 252 274 252 275 0.96 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF691-208 - 284 3.2e-19 68.4 48.6 1 7 4.2e-05 0.016 15.2 0.2 2 24 84 106 84 109 0.91 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF691-208 - 284 3.2e-19 68.4 48.6 2 7 0.00027 0.1 12.6 1.7 2 12 112 122 112 123 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF691-208 - 284 3.2e-19 68.4 48.6 3 7 0.0011 0.41 10.7 1.6 1 24 139 162 139 165 0.88 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF691-208 - 284 3.2e-19 68.4 48.6 4 7 0.0001 0.041 13.9 0.2 2 12 168 178 168 193 0.82 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF691-208 - 284 3.2e-19 68.4 48.6 5 7 0.038 15 5.7 3.7 2 24 196 218 196 221 0.75 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF691-208 - 284 3.2e-19 68.4 48.6 6 7 5.3e-07 0.00021 21.2 0.3 2 26 224 248 224 249 0.96 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF691-208 - 284 3.2e-19 68.4 48.6 7 7 6.9e-06 0.0027 17.7 2.2 2 25 252 275 252 277 0.95 C2H2-type zinc finger zf-C2H2_jaz PF12171.8 27 ZNF691-208 - 284 1.4e-18 66.6 26.6 1 7 7.7e-05 0.03 14.6 0.1 2 22 84 104 83 104 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF691-208 - 284 1.4e-18 66.6 26.6 2 7 0.0045 1.7 9.0 0.0 2 22 112 132 111 132 0.90 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF691-208 - 284 1.4e-18 66.6 26.6 3 7 0.27 1e+02 3.3 0.6 2 21 140 159 139 160 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF691-208 - 284 1.4e-18 66.6 26.6 4 7 0.011 4.2 7.8 0.1 2 20 168 186 167 191 0.85 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF691-208 - 284 1.4e-18 66.6 26.6 5 7 0.00071 0.28 11.5 1.3 2 20 196 214 195 218 0.89 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF691-208 - 284 1.4e-18 66.6 26.6 6 7 1.4e-05 0.0055 17.0 0.0 2 24 224 246 223 247 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF691-208 - 284 1.4e-18 66.6 26.6 7 7 5.8e-06 0.0023 18.2 0.3 2 24 252 274 251 275 0.94 Zinc-finger double-stranded RNA-binding Zn-ribbon_8 PF09723.10 40 ZNF691-208 - 284 9.5e-11 41.6 30.6 1 5 3.8e-05 0.015 15.4 2.2 6 38 84 123 83 124 0.90 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF691-208 - 284 9.5e-11 41.6 30.6 2 5 8.7e-06 0.0034 17.5 5.4 6 38 112 151 110 153 0.90 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF691-208 - 284 9.5e-11 41.6 30.6 3 5 0.0001 0.041 14.0 2.2 6 34 168 203 167 208 0.85 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF691-208 - 284 9.5e-11 41.6 30.6 4 5 2.8e-05 0.011 15.8 3.9 6 38 224 263 223 264 0.91 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF691-208 - 284 9.5e-11 41.6 30.6 5 5 0.0062 2.4 8.3 0.2 6 17 252 263 251 274 0.81 Zinc ribbon domain zf_UBZ PF18439.1 32 ZNF691-208 - 284 3.2e-10 39.4 25.7 1 7 0.0034 1.3 8.7 0.1 3 20 84 102 82 103 0.82 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF691-208 - 284 3.2e-10 39.4 25.7 2 7 0.00087 0.34 10.5 0.2 3 15 112 124 110 131 0.80 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF691-208 - 284 3.2e-10 39.4 25.7 3 7 0.0029 1.1 8.9 0.7 2 21 139 159 138 159 0.88 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF691-208 - 284 3.2e-10 39.4 25.7 4 7 0.0042 1.6 8.3 0.1 3 15 168 180 166 187 0.83 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF691-208 - 284 3.2e-10 39.4 25.7 5 7 0.02 8 6.2 0.4 3 15 196 208 194 215 0.83 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF691-208 - 284 3.2e-10 39.4 25.7 6 7 0.015 6 6.6 0.1 3 20 224 242 222 243 0.78 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF691-208 - 284 3.2e-10 39.4 25.7 7 7 0.051 20 4.9 0.1 3 15 252 264 250 271 0.80 Ubiquitin-Binding Zinc Finger # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF691-208.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF691-208.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF691-208.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF691-208.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF691-208.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:12:32 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- KRAB PF01352.27 42 ZNF69-201 - 149 9.3e-14 50.8 0.2 1 1 8.8e-18 1.6e-13 50.1 0.2 14 42 22 50 20 50 0.97 KRAB box # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF69-201.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF69-201.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF69-201.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF69-201.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF69-201.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:12:32 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZNF69-202 - 566 3.1e-100 324.5 113.8 1 14 2.7e-09 2.7e-06 27.5 1.1 2 25 173 202 172 203 0.86 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF69-202 - 566 3.1e-100 324.5 113.8 2 14 1.9e-07 0.00019 21.7 2.4 3 24 208 229 206 231 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF69-202 - 566 3.1e-100 324.5 113.8 3 14 1.1e-10 1.1e-07 32.0 0.8 5 25 238 258 236 259 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF69-202 - 566 3.1e-100 324.5 113.8 4 14 8.1e-11 8.1e-08 32.4 1.3 2 25 263 286 262 287 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF69-202 - 566 3.1e-100 324.5 113.8 5 14 9.2e-11 9.2e-08 32.2 3.0 2 25 291 314 291 315 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF69-202 - 566 3.1e-100 324.5 113.8 6 14 4e-07 0.0004 20.7 0.8 5 23 322 340 318 343 0.90 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF69-202 - 566 3.1e-100 324.5 113.8 7 14 2.5e-09 2.5e-06 27.6 0.4 2 24 347 369 346 369 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF69-202 - 566 3.1e-100 324.5 113.8 8 14 2.2e-10 2.2e-07 31.0 3.6 2 26 375 399 374 399 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF69-202 - 566 3.1e-100 324.5 113.8 9 14 6.7e-13 6.7e-10 38.9 0.9 1 25 402 426 402 427 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF69-202 - 566 3.1e-100 324.5 113.8 10 14 4.5e-10 4.5e-07 30.0 1.0 1 25 430 454 430 455 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF69-202 - 566 3.1e-100 324.5 113.8 11 14 1.7e-08 1.6e-05 25.1 2.4 4 24 467 487 458 489 0.90 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF69-202 - 566 3.1e-100 324.5 113.8 12 14 7e-11 7e-08 32.6 0.5 1 26 492 517 492 517 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF69-202 - 566 3.1e-100 324.5 113.8 13 14 2.5e-11 2.5e-08 34.0 3.5 2 24 521 543 520 544 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF69-202 - 566 3.1e-100 324.5 113.8 14 14 0.0019 1.9 9.1 0.7 2 18 549 565 549 566 0.91 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZNF69-202 - 566 1.5e-51 170.1 116.5 1 14 1 1e+03 0.5 0.0 5 12 99 106 97 107 0.87 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF69-202 - 566 1.5e-51 170.1 116.5 2 14 3.7e-06 0.0037 17.6 1.0 1 23 192 214 192 214 0.95 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF69-202 - 566 1.5e-51 170.1 116.5 3 14 0.0079 7.9 7.2 4.3 1 23 220 242 220 242 0.95 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF69-202 - 566 1.5e-51 170.1 116.5 4 14 4.2e-08 4.2e-05 23.8 1.0 1 23 248 270 248 270 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF69-202 - 566 1.5e-51 170.1 116.5 5 14 4e-05 0.04 14.4 4.7 1 23 276 298 276 298 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF69-202 - 566 1.5e-51 170.1 116.5 6 14 6.7e-05 0.066 13.7 1.9 1 23 304 326 304 326 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF69-202 - 566 1.5e-51 170.1 116.5 7 14 1.9e-06 0.0019 18.6 0.6 1 23 332 354 332 354 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF69-202 - 566 1.5e-51 170.1 116.5 8 14 8.3e-07 0.00083 19.7 2.2 1 23 360 382 360 382 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF69-202 - 566 1.5e-51 170.1 116.5 9 14 1.7e-07 0.00017 21.9 2.6 1 23 388 410 388 410 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF69-202 - 566 1.5e-51 170.1 116.5 10 14 2e-08 2e-05 24.8 2.1 1 23 416 438 416 438 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF69-202 - 566 1.5e-51 170.1 116.5 11 14 2.3e-07 0.00023 21.4 0.7 1 23 444 468 444 468 0.94 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF69-202 - 566 1.5e-51 170.1 116.5 12 14 5.6e-05 0.056 13.9 3.9 1 23 478 500 478 500 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF69-202 - 566 1.5e-51 170.1 116.5 13 14 3e-07 0.0003 21.1 1.4 1 23 506 528 506 528 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF69-202 - 566 1.5e-51 170.1 116.5 14 14 4.7e-07 0.00047 20.5 0.4 1 23 534 556 534 556 0.99 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZNF69-202 - 566 1.8e-46 152.7 109.0 1 14 1.6 1.6e+03 0.5 0.0 4 12 98 106 98 111 0.82 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF69-202 - 566 1.8e-46 152.7 109.0 2 14 4.3e-06 0.0043 17.8 1.1 1 23 192 214 192 215 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF69-202 - 566 1.8e-46 152.7 109.0 3 14 0.00037 0.37 11.8 4.0 1 23 220 242 220 243 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF69-202 - 566 1.8e-46 152.7 109.0 4 14 6.8e-07 0.00068 20.3 0.8 1 23 248 270 248 271 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF69-202 - 566 1.8e-46 152.7 109.0 5 14 2.3e-05 0.023 15.5 3.8 1 23 276 298 276 299 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF69-202 - 566 1.8e-46 152.7 109.0 6 14 9.6e-06 0.0096 16.7 1.8 1 23 304 326 304 327 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF69-202 - 566 1.8e-46 152.7 109.0 7 14 3.4e-06 0.0034 18.1 0.5 1 23 332 354 332 355 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF69-202 - 566 1.8e-46 152.7 109.0 8 14 1.5e-07 0.00015 22.3 2.1 1 23 360 382 360 383 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF69-202 - 566 1.8e-46 152.7 109.0 9 14 6.3e-05 0.063 14.2 2.0 1 23 388 410 388 411 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF69-202 - 566 1.8e-46 152.7 109.0 10 14 9.7e-05 0.097 13.6 1.5 1 19 416 434 416 439 0.88 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF69-202 - 566 1.8e-46 152.7 109.0 11 14 7.3e-06 0.0072 17.1 0.2 1 22 444 465 444 467 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF69-202 - 566 1.8e-46 152.7 109.0 12 14 5.6e-07 0.00055 20.5 3.4 1 23 478 500 478 501 0.97 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF69-202 - 566 1.8e-46 152.7 109.0 13 14 6.4e-07 0.00064 20.3 1.3 1 23 506 528 506 529 0.97 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF69-202 - 566 1.8e-46 152.7 109.0 14 14 0.0019 1.9 9.6 0.2 1 19 534 552 534 557 0.76 C2H2-type zinc finger zf-C2H2_jaz PF12171.8 27 ZNF69-202 - 566 6.8e-24 83.6 73.0 1 13 1.5e-05 0.015 15.6 0.1 2 21 192 211 191 212 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF69-202 - 566 6.8e-24 83.6 73.0 2 13 0.45 4.4e+02 1.3 1.9 2 12 220 230 219 240 0.86 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF69-202 - 566 6.8e-24 83.6 73.0 3 13 0.0018 1.8 9.0 0.3 2 24 248 270 247 270 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF69-202 - 566 6.8e-24 83.6 73.0 4 13 0.0033 3.3 8.1 0.6 2 22 276 296 275 296 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF69-202 - 566 6.8e-24 83.6 73.0 5 13 0.85 8.5e+02 0.4 1.1 4 23 306 325 304 327 0.74 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF69-202 - 566 6.8e-24 83.6 73.0 6 13 0.0045 4.5 7.7 0.0 2 22 332 352 331 352 0.95 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF69-202 - 566 6.8e-24 83.6 73.0 7 13 1.1e-06 0.0011 19.2 1.9 2 24 360 382 359 383 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF69-202 - 566 6.8e-24 83.6 73.0 8 13 0.00053 0.53 10.6 0.3 2 22 388 408 387 408 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF69-202 - 566 6.8e-24 83.6 73.0 9 13 0.0012 1.1 9.6 0.2 2 20 416 434 415 438 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF69-202 - 566 6.8e-24 83.6 73.0 10 13 8.7e-07 0.00087 19.5 0.3 2 24 444 466 443 469 0.91 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF69-202 - 566 6.8e-24 83.6 73.0 11 13 0.00014 0.14 12.5 1.2 2 24 478 500 477 500 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF69-202 - 566 6.8e-24 83.6 73.0 12 13 0.00097 0.97 9.8 1.2 2 24 506 528 505 528 0.95 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF69-202 - 566 6.8e-24 83.6 73.0 13 13 0.028 28 5.1 0.0 2 20 534 552 533 557 0.88 Zinc-finger double-stranded RNA-binding KRAB PF01352.27 42 ZNF69-202 - 566 7.1e-23 80.0 0.1 1 1 1.1e-25 1.1e-22 79.4 0.1 1 42 23 64 23 64 0.99 KRAB box zf-C2H2_6 PF13912.6 27 ZNF69-202 - 566 6e-22 77.1 107.2 1 13 0.0019 1.9 8.6 0.7 2 11 192 201 192 204 0.90 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF69-202 - 566 6e-22 77.1 107.2 2 13 0.25 2.5e+02 1.8 4.5 2 12 220 230 220 232 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF69-202 - 566 6e-22 77.1 107.2 3 13 1e-05 0.01 15.8 1.3 2 24 248 270 248 273 0.91 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF69-202 - 566 6e-22 77.1 107.2 4 13 0.00024 0.24 11.4 0.9 2 13 276 287 276 287 0.96 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF69-202 - 566 6e-22 77.1 107.2 5 13 0.0025 2.5 8.2 1.4 1 11 303 313 303 319 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF69-202 - 566 6e-22 77.1 107.2 6 13 5.9e-05 0.059 13.4 0.7 2 24 332 354 332 357 0.87 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF69-202 - 566 6e-22 77.1 107.2 7 13 0.002 2 8.5 3.6 2 25 360 383 360 385 0.88 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF69-202 - 566 6e-22 77.1 107.2 8 13 0.0032 3.2 7.9 0.7 2 11 388 397 388 410 0.89 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF69-202 - 566 6e-22 77.1 107.2 9 13 0.00016 0.16 12.0 1.2 2 13 416 427 416 440 0.84 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF69-202 - 566 6e-22 77.1 107.2 10 13 3.9e-07 0.00039 20.3 1.2 2 22 444 464 444 468 0.92 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF69-202 - 566 6e-22 77.1 107.2 11 13 0.031 31 4.7 4.3 2 24 478 500 478 503 0.88 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF69-202 - 566 6e-22 77.1 107.2 12 13 0.0002 0.2 11.7 1.9 2 24 506 528 505 531 0.88 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF69-202 - 566 6e-22 77.1 107.2 13 13 7.4e-06 0.0074 16.3 0.4 2 25 534 557 534 558 0.95 C2H2-type zinc finger # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF69-202.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF69-202.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF69-202.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF69-202.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF69-202.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:12:33 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF69-203.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF69-203.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF69-203.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF69-203.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF69-203.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:12:33 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-C2H2 PF00096.26 23 ZNF692-201 - 519 8.9e-20 70.0 32.9 1 5 8e-05 0.09 13.3 1.6 3 23 330 353 328 353 0.91 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF692-201 - 519 8.9e-20 70.0 32.9 2 5 4.1e-07 0.00046 20.5 1.8 1 23 359 383 359 383 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF692-201 - 519 8.9e-20 70.0 32.9 3 5 1.8e-07 0.0002 21.6 0.6 1 23 389 411 389 411 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF692-201 - 519 8.9e-20 70.0 32.9 4 5 1.4e-06 0.0015 18.9 2.0 2 23 418 439 417 439 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF692-201 - 519 8.9e-20 70.0 32.9 5 5 1.5e-05 0.017 15.6 0.3 1 23 448 471 448 471 0.97 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZNF692-201 - 519 1e-11 44.6 31.8 1 5 0.00027 0.31 12.0 1.2 3 24 330 353 329 353 0.89 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF692-201 - 519 1e-11 44.6 31.8 2 5 1.9e-05 0.022 15.6 1.9 1 23 359 383 359 384 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF692-201 - 519 1e-11 44.6 31.8 3 5 2.1e-05 0.023 15.5 0.5 1 23 389 411 389 412 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF692-201 - 519 1e-11 44.6 31.8 4 5 0.024 27 6.0 1.3 2 23 418 439 417 440 0.70 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF692-201 - 519 1e-11 44.6 31.8 5 5 4.2e-05 0.047 14.6 0.5 1 24 448 471 448 471 0.95 C2H2-type zinc finger zf-H2C2_2 PF13465.6 26 ZNF692-201 - 519 2.3e-11 43.6 26.5 1 4 0.02 22 5.7 5.9 2 25 345 371 344 372 0.88 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF692-201 - 519 2.3e-11 43.6 26.5 2 4 8.5e-05 0.096 13.2 0.9 1 25 375 399 371 400 0.83 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF692-201 - 519 2.3e-11 43.6 26.5 3 4 5.5e-08 6.2e-05 23.2 0.5 1 23 403 425 403 428 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF692-201 - 519 2.3e-11 43.6 26.5 4 4 2.7e-05 0.031 14.7 0.3 1 25 431 458 431 459 0.83 Zinc-finger double domain # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF692-201.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF692-201.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF692-201.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF692-201.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF692-201.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:12:34 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-C2H2 PF00096.26 23 ZNF692-202 - 474 5.1e-20 70.7 32.9 1 5 6.7e-05 0.08 13.4 1.6 3 23 285 308 283 308 0.91 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF692-202 - 474 5.1e-20 70.7 32.9 2 5 3.5e-07 0.00042 20.6 1.8 1 23 314 338 314 338 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF692-202 - 474 5.1e-20 70.7 32.9 3 5 1.5e-07 0.00018 21.8 0.6 1 23 344 366 344 366 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF692-202 - 474 5.1e-20 70.7 32.9 4 5 1.1e-06 0.0014 19.0 2.0 2 23 373 394 372 394 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF692-202 - 474 5.1e-20 70.7 32.9 5 5 1.3e-05 0.015 15.7 0.3 1 23 403 426 403 426 0.97 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZNF692-202 - 474 5.8e-12 45.4 31.8 1 5 0.00023 0.27 12.2 1.2 3 24 285 308 284 308 0.89 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF692-202 - 474 5.8e-12 45.4 31.8 2 5 1.6e-05 0.02 15.7 1.9 1 23 314 338 314 339 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF692-202 - 474 5.8e-12 45.4 31.8 3 5 1.7e-05 0.021 15.7 0.5 1 23 344 366 344 367 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF692-202 - 474 5.8e-12 45.4 31.8 4 5 0.02 24 6.1 1.3 2 23 373 394 372 395 0.70 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF692-202 - 474 5.8e-12 45.4 31.8 5 5 3.5e-05 0.042 14.7 0.5 1 24 403 426 403 426 0.95 C2H2-type zinc finger zf-H2C2_2 PF13465.6 26 ZNF692-202 - 474 1.4e-11 44.3 26.4 1 4 0.016 20 5.9 5.9 2 25 300 326 299 327 0.88 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF692-202 - 474 1.4e-11 44.3 26.4 2 4 7.1e-05 0.085 13.3 0.9 1 25 330 354 326 355 0.83 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF692-202 - 474 1.4e-11 44.3 26.4 3 4 4.6e-08 5.6e-05 23.4 0.5 1 23 358 380 358 383 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF692-202 - 474 1.4e-11 44.3 26.4 4 4 2.3e-05 0.027 14.9 0.3 1 25 386 413 386 414 0.83 Zinc-finger double domain # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF692-202.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF692-202.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF692-202.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF692-202.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF692-202.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:12:34 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-C2H2 PF00096.26 23 ZNF692-203 - 120 1.7e-08 34.5 10.3 1 2 5.3e-06 0.012 16.1 1.6 3 23 52 75 50 75 0.91 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF692-203 - 120 1.7e-08 34.5 10.3 2 2 2.7e-08 6e-05 23.3 1.8 1 23 81 105 81 105 0.96 Zinc finger, C2H2 type # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF692-203.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF692-203.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF692-203.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF692-203.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF692-203.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:12:34 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-C2H2 PF00096.26 23 ZNF692-204 - 524 9.1e-20 69.9 32.9 1 5 8.1e-05 0.091 13.3 1.6 3 23 335 358 333 358 0.91 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF692-204 - 524 9.1e-20 69.9 32.9 2 5 4.2e-07 0.00047 20.5 1.8 1 23 364 388 364 388 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF692-204 - 524 9.1e-20 69.9 32.9 3 5 1.8e-07 0.0002 21.6 0.6 1 23 394 416 394 416 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF692-204 - 524 9.1e-20 69.9 32.9 4 5 1.4e-06 0.0015 18.8 2.0 2 23 423 444 422 444 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF692-204 - 524 9.1e-20 69.9 32.9 5 5 1.5e-05 0.017 15.6 0.3 1 23 453 476 453 476 0.97 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZNF692-204 - 524 1.1e-11 44.6 31.8 1 5 0.00028 0.31 12.0 1.2 3 24 335 358 334 358 0.89 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF692-204 - 524 1.1e-11 44.6 31.8 2 5 2e-05 0.022 15.6 1.9 1 23 364 388 364 389 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF692-204 - 524 1.1e-11 44.6 31.8 3 5 2.1e-05 0.023 15.5 0.5 1 23 394 416 394 417 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF692-204 - 524 1.1e-11 44.6 31.8 4 5 0.024 27 6.0 1.3 2 23 423 444 422 445 0.70 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF692-204 - 524 1.1e-11 44.6 31.8 5 5 4.2e-05 0.047 14.5 0.5 1 24 453 476 453 476 0.95 C2H2-type zinc finger zf-H2C2_2 PF13465.6 26 ZNF692-204 - 524 2.4e-11 43.5 26.5 1 4 0.02 22 5.7 5.9 2 25 350 376 349 377 0.88 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF692-204 - 524 2.4e-11 43.5 26.5 2 4 8.6e-05 0.097 13.1 0.9 1 25 380 404 376 405 0.83 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF692-204 - 524 2.4e-11 43.5 26.5 3 4 5.6e-08 6.3e-05 23.2 0.5 1 23 408 430 408 433 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF692-204 - 524 2.4e-11 43.5 26.5 4 4 2.8e-05 0.031 14.7 0.3 1 25 436 463 436 464 0.83 Zinc-finger double domain # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF692-204.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF692-204.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF692-204.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF692-204.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF692-204.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:12:35 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF692-205.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF692-205.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF692-205.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF692-205.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF692-205.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:12:35 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-C2H2 PF00096.26 23 ZNF692-206 - 315 5.1e-21 73.9 32.9 1 5 5.4e-05 0.048 14.1 1.6 3 23 126 149 124 149 0.91 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF692-206 - 315 5.1e-21 73.9 32.9 2 5 2.8e-07 0.00025 21.3 1.8 1 23 155 179 155 179 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF692-206 - 315 5.1e-21 73.9 32.9 3 5 1.2e-07 0.00011 22.5 0.6 1 23 185 207 185 207 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF692-206 - 315 5.1e-21 73.9 32.9 4 5 9.1e-07 0.00082 19.7 2.0 2 23 214 235 213 235 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF692-206 - 315 5.1e-21 73.9 32.9 5 5 1e-05 0.0091 16.4 0.3 1 23 244 267 244 267 0.97 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZNF692-206 - 315 7.9e-13 48.1 31.8 1 5 0.00018 0.16 12.9 1.2 3 24 126 149 125 149 0.89 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF692-206 - 315 7.9e-13 48.1 31.8 2 5 1.3e-05 0.012 16.4 1.9 1 23 155 179 155 180 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF692-206 - 315 7.9e-13 48.1 31.8 3 5 1.4e-05 0.012 16.3 0.5 1 23 185 207 185 208 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF692-206 - 315 7.9e-13 48.1 31.8 4 5 0.016 14 6.8 1.3 2 23 214 235 213 236 0.70 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF692-206 - 315 7.9e-13 48.1 31.8 5 5 2.8e-05 0.025 15.4 0.5 1 24 244 267 244 267 0.95 C2H2-type zinc finger zf-H2C2_2 PF13465.6 26 ZNF692-206 - 315 2.1e-12 46.9 26.6 1 4 0.012 11 6.6 5.8 2 25 141 167 140 168 0.88 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF692-206 - 315 2.1e-12 46.9 26.6 2 4 6.1e-05 0.055 13.9 1.0 1 25 171 195 167 196 0.83 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF692-206 - 315 2.1e-12 46.9 26.6 3 4 3.7e-08 3.3e-05 24.1 0.4 1 23 199 221 199 224 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF692-206 - 315 2.1e-12 46.9 26.6 4 4 1.8e-05 0.016 15.6 0.3 1 25 227 254 227 255 0.83 Zinc-finger double domain # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF692-206.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF692-206.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF692-206.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF692-206.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF692-206.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:12:35 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF692-207.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF692-207.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF692-207.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF692-207.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF692-207.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:12:36 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF692-208.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF692-208.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF692-208.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF692-208.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF692-208.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:12:36 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF692-209.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF692-209.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF692-209.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF692-209.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF692-209.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:12:36 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-C2H2 PF00096.26 23 ZNF692-210 - 192 2.1e-22 78.3 32.9 1 5 2.5e-05 0.024 15.1 1.6 3 23 3 26 1 26 0.91 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF692-210 - 192 2.1e-22 78.3 32.9 2 5 1.3e-07 0.00013 22.3 1.8 1 23 32 56 32 56 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF692-210 - 192 2.1e-22 78.3 32.9 3 5 5.5e-08 5.5e-05 23.4 0.6 1 23 62 84 62 84 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF692-210 - 192 2.1e-22 78.3 32.9 4 5 4.2e-07 0.00042 20.6 2.0 2 23 91 112 90 112 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF692-210 - 192 2.1e-22 78.3 32.9 5 5 4.6e-06 0.0046 17.3 0.3 1 23 121 144 121 144 0.97 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZNF692-210 - 192 3e-14 52.5 31.8 1 5 8.3e-05 0.083 13.8 1.2 3 24 3 26 2 26 0.89 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF692-210 - 192 3e-14 52.5 31.8 2 5 5.8e-06 0.0058 17.4 1.9 1 23 32 56 32 57 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF692-210 - 192 3e-14 52.5 31.8 3 5 6.3e-06 0.0063 17.3 0.5 1 23 62 84 62 85 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF692-210 - 192 3e-14 52.5 31.8 4 5 0.0074 7.3 7.7 1.3 2 23 91 112 90 113 0.70 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF692-210 - 192 3e-14 52.5 31.8 5 5 1.3e-05 0.013 16.3 0.5 1 24 121 144 121 144 0.95 C2H2-type zinc finger zf-H2C2_2 PF13465.6 26 ZNF692-210 - 192 1.9e-13 50.2 27.1 1 4 0.0064 6.4 7.4 6.0 2 25 18 44 17 45 0.88 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF692-210 - 192 1.9e-13 50.2 27.1 2 4 3e-05 0.03 14.8 1.2 1 25 48 72 44 73 0.83 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF692-210 - 192 1.9e-13 50.2 27.1 3 4 1.7e-08 1.7e-05 25.0 0.4 1 23 76 98 76 101 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF692-210 - 192 1.9e-13 50.2 27.1 4 4 8.1e-06 0.0081 16.6 0.3 1 25 104 131 104 132 0.83 Zinc-finger double domain # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF692-210.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF692-210.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF692-210.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF692-210.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF692-210.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:12:37 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-C2H2 PF00096.26 23 ZNF692-211 - 241 9.3e-22 76.2 32.9 1 5 3.9e-05 0.034 14.6 1.6 3 23 52 75 50 75 0.91 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF692-211 - 241 9.3e-22 76.2 32.9 2 5 2e-07 0.00017 21.8 1.8 1 23 81 105 81 105 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF692-211 - 241 9.3e-22 76.2 32.9 3 5 8.9e-08 7.6e-05 23.0 0.6 1 23 111 133 111 133 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF692-211 - 241 9.3e-22 76.2 32.9 4 5 6.7e-07 0.00058 20.2 2.0 2 23 140 161 139 161 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF692-211 - 241 9.3e-22 76.2 32.9 5 5 7.4e-06 0.0063 16.9 0.3 1 23 170 193 170 193 0.97 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZNF692-211 - 241 1.4e-13 50.4 31.8 1 5 0.00013 0.11 13.3 1.2 3 24 52 75 51 75 0.89 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF692-211 - 241 1.4e-13 50.4 31.8 2 5 9.4e-06 0.0081 16.9 1.9 1 23 81 105 81 106 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF692-211 - 241 1.4e-13 50.4 31.8 3 5 1e-05 0.0086 16.8 0.5 1 23 111 133 111 134 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF692-211 - 241 1.4e-13 50.4 31.8 4 5 0.012 10 7.3 1.3 2 23 140 161 139 162 0.70 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF692-211 - 241 1.4e-13 50.4 31.8 5 5 2e-05 0.017 15.9 0.5 1 24 170 193 170 193 0.95 C2H2-type zinc finger zf-H2C2_2 PF13465.6 26 ZNF692-211 - 241 6e-13 48.6 26.8 1 4 0.0093 8 7.1 5.9 2 25 67 93 66 94 0.88 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF692-211 - 241 6e-13 48.6 26.8 2 4 4.7e-05 0.04 14.4 1.1 1 25 97 121 93 122 0.83 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF692-211 - 241 6e-13 48.6 26.8 3 4 2.7e-08 2.3e-05 24.6 0.4 1 23 125 147 125 150 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF692-211 - 241 6e-13 48.6 26.8 4 4 1.3e-05 0.011 16.1 0.3 1 25 153 180 153 181 0.83 Zinc-finger double domain # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF692-211.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF692-211.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF692-211.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF692-211.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF692-211.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:12:37 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF692-212.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF692-212.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF692-212.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF692-212.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF692-212.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:12:38 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-C2H2 PF00096.26 23 ZNF692-213 - 71 2.7e-09 37.0 10.3 1 2 2.2e-06 0.0044 17.4 1.6 3 23 3 26 1 26 0.91 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF692-213 - 71 2.7e-09 37.0 10.3 2 2 1.1e-08 2.2e-05 24.6 1.8 1 23 32 56 32 56 0.97 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZNF692-213 - 71 2.2e-07 31.1 9.9 1 2 7.5e-06 0.015 16.1 1.2 3 24 3 26 2 26 0.89 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF692-213 - 71 2.2e-07 31.1 9.9 2 2 5e-07 0.001 19.7 2.0 1 23 32 56 32 57 0.94 C2H2-type zinc finger # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF692-213.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF692-213.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF692-213.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF692-213.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF692-213.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:12:38 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF692-214.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF692-214.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF692-214.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF692-214.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF692-214.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:12:38 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF692-215.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF692-215.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF692-215.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF692-215.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF692-215.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:12:39 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF692-216.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF692-216.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF692-216.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF692-216.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF692-216.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:12:39 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF692-218.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF692-218.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF692-218.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF692-218.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF692-218.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:12:39 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF692-219.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF692-219.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF692-219.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF692-219.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF692-219.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:12:40 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF692-220.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF692-220.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF692-220.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF692-220.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF692-220.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:12:40 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF692-221.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF692-221.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF692-221.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF692-221.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF692-221.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:12:40 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF692-222.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF692-222.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF692-222.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF692-222.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF692-222.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:12:41 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF692-223.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF692-223.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF692-223.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF692-223.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF692-223.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:12:41 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF692-224.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF692-224.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF692-224.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF692-224.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF692-224.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:12:41 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF692-225.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF692-225.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF692-225.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF692-225.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF692-225.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:12:42 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF692-226.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF692-226.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF692-226.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF692-226.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF692-226.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:12:42 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-C2H2 PF00096.26 23 ZNF692-227 - 241 9.3e-22 76.2 32.9 1 5 3.9e-05 0.034 14.6 1.6 3 23 52 75 50 75 0.91 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF692-227 - 241 9.3e-22 76.2 32.9 2 5 2e-07 0.00017 21.8 1.8 1 23 81 105 81 105 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF692-227 - 241 9.3e-22 76.2 32.9 3 5 8.9e-08 7.6e-05 23.0 0.6 1 23 111 133 111 133 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF692-227 - 241 9.3e-22 76.2 32.9 4 5 6.7e-07 0.00058 20.2 2.0 2 23 140 161 139 161 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF692-227 - 241 9.3e-22 76.2 32.9 5 5 7.4e-06 0.0063 16.9 0.3 1 23 170 193 170 193 0.97 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZNF692-227 - 241 1.4e-13 50.4 31.8 1 5 0.00013 0.11 13.3 1.2 3 24 52 75 51 75 0.89 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF692-227 - 241 1.4e-13 50.4 31.8 2 5 9.4e-06 0.0081 16.9 1.9 1 23 81 105 81 106 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF692-227 - 241 1.4e-13 50.4 31.8 3 5 1e-05 0.0086 16.8 0.5 1 23 111 133 111 134 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF692-227 - 241 1.4e-13 50.4 31.8 4 5 0.012 10 7.3 1.3 2 23 140 161 139 162 0.70 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF692-227 - 241 1.4e-13 50.4 31.8 5 5 2e-05 0.017 15.9 0.5 1 24 170 193 170 193 0.95 C2H2-type zinc finger zf-H2C2_2 PF13465.6 26 ZNF692-227 - 241 6e-13 48.6 26.8 1 4 0.0093 8 7.1 5.9 2 25 67 93 66 94 0.88 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF692-227 - 241 6e-13 48.6 26.8 2 4 4.7e-05 0.04 14.4 1.1 1 25 97 121 93 122 0.83 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF692-227 - 241 6e-13 48.6 26.8 3 4 2.7e-08 2.3e-05 24.6 0.4 1 23 125 147 125 150 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF692-227 - 241 6e-13 48.6 26.8 4 4 1.3e-05 0.011 16.1 0.3 1 25 153 180 153 181 0.83 Zinc-finger double domain # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF692-227.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF692-227.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF692-227.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF692-227.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF692-227.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:12:42 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF692-228.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF692-228.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF692-228.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF692-228.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF692-228.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:12:43 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF692-229.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF692-229.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF692-229.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF692-229.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF692-229.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:12:43 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF692-230.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF692-230.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF692-230.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF692-230.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF692-230.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:12:44 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZNF695-201 - 515 1.3e-77 253.0 116.2 1 14 0.16 1.7e+02 2.9 1.4 13 25 154 166 150 167 0.81 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF695-201 - 515 1.3e-77 253.0 116.2 2 14 3.2e-06 0.0034 17.7 1.6 8 21 177 190 171 193 0.88 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF695-201 - 515 1.3e-77 253.0 116.2 3 14 2.1e-08 2.2e-05 24.6 0.2 7 25 204 222 203 223 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF695-201 - 515 1.3e-77 253.0 116.2 4 14 0.091 96 3.7 2.9 7 25 232 250 231 251 0.88 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF695-201 - 515 1.3e-77 253.0 116.2 5 14 9.7e-06 0.01 16.2 1.9 7 25 260 278 259 278 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF695-201 - 515 1.3e-77 253.0 116.2 6 14 2.2e-11 2.4e-08 34.0 3.0 2 25 283 306 282 306 0.97 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF695-201 - 515 1.3e-77 253.0 116.2 7 14 2.9e-09 3e-06 27.4 2.8 2 25 311 334 310 334 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF695-201 - 515 1.3e-77 253.0 116.2 8 14 2.6e-10 2.7e-07 30.7 0.6 2 25 339 362 338 363 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF695-201 - 515 1.3e-77 253.0 116.2 9 14 1.5e-11 1.6e-08 34.6 2.2 1 25 366 390 366 390 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF695-201 - 515 1.3e-77 253.0 116.2 10 14 4.6e-11 4.8e-08 33.1 0.9 2 25 395 418 394 418 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF695-201 - 515 1.3e-77 253.0 116.2 11 14 5.8e-12 6.1e-09 35.9 1.0 2 25 423 446 422 446 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF695-201 - 515 1.3e-77 253.0 116.2 12 14 5.9e-12 6.2e-09 35.9 0.8 2 25 451 474 450 475 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF695-201 - 515 1.3e-77 253.0 116.2 13 14 2.9e-09 3e-06 27.4 5.9 1 26 478 503 478 503 0.97 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF695-201 - 515 1.3e-77 253.0 116.2 14 14 7.5 7.9e+03 -2.4 0.2 4 10 509 515 507 515 0.82 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZNF695-201 - 515 5.3e-41 136.8 104.9 1 13 0.0084 8.9 7.0 0.8 1 18 156 173 156 173 0.93 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF695-201 - 515 5.3e-41 136.8 104.9 2 13 0.38 4e+02 1.8 0.9 1 7 184 190 184 197 0.86 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF695-201 - 515 5.3e-41 136.8 104.9 3 13 0.12 1.3e+02 3.3 7.9 1 15 212 226 212 232 0.87 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF695-201 - 515 5.3e-41 136.8 104.9 4 13 0.029 30 5.3 2.3 2 17 241 256 240 257 0.90 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF695-201 - 515 5.3e-41 136.8 104.9 5 13 5.4e-06 0.0057 17.1 1.8 1 23 268 290 268 290 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF695-201 - 515 5.3e-41 136.8 104.9 6 13 1.5e-06 0.0016 18.8 1.4 1 23 296 318 296 318 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF695-201 - 515 5.3e-41 136.8 104.9 7 13 4.3e-08 4.5e-05 23.7 0.9 1 23 324 346 324 346 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF695-201 - 515 5.3e-41 136.8 104.9 8 13 4.4e-09 4.7e-06 26.8 1.6 1 23 352 374 352 374 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF695-201 - 515 5.3e-41 136.8 104.9 9 13 5.4e-06 0.0057 17.1 0.5 1 23 380 402 380 402 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF695-201 - 515 5.3e-41 136.8 104.9 10 13 3.6e-06 0.0037 17.6 0.8 1 23 408 430 408 430 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF695-201 - 515 5.3e-41 136.8 104.9 11 13 4.6e-06 0.0048 17.3 0.8 1 23 436 458 436 458 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF695-201 - 515 5.3e-41 136.8 104.9 12 13 1.4e-07 0.00015 22.0 1.4 1 23 464 486 464 486 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF695-201 - 515 5.3e-41 136.8 104.9 13 13 3.4e-08 3.6e-05 24.0 0.4 1 23 492 514 492 514 0.99 Zinc finger, C2H2 type KRAB PF01352.27 42 ZNF695-201 - 515 5.4e-25 86.8 0.0 1 1 1.2e-27 1.2e-24 85.6 0.0 2 42 4 44 3 44 0.97 KRAB box zf-C2H2_4 PF13894.6 24 ZNF695-201 - 515 7.9e-21 73.0 101.3 1 13 0.13 1.4e+02 3.8 0.4 1 16 156 171 156 173 0.78 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF695-201 - 515 7.9e-21 73.0 101.3 2 13 0.55 5.8e+02 1.8 0.7 1 9 184 192 184 198 0.78 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF695-201 - 515 7.9e-21 73.0 101.3 3 13 0.16 1.7e+02 3.5 5.4 1 15 212 226 212 239 0.78 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF695-201 - 515 7.9e-21 73.0 101.3 4 13 0.022 24 6.1 1.9 2 16 241 255 240 262 0.91 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF695-201 - 515 7.9e-21 73.0 101.3 5 13 0.00021 0.22 12.4 1.8 1 23 268 290 268 291 0.88 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF695-201 - 515 7.9e-21 73.0 101.3 6 13 0.0001 0.11 13.4 1.3 1 23 296 318 296 319 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF695-201 - 515 7.9e-21 73.0 101.3 7 13 2.9e-05 0.031 15.1 0.8 1 23 324 346 324 347 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF695-201 - 515 7.9e-21 73.0 101.3 8 13 4.9e-05 0.051 14.4 1.3 1 23 352 374 352 375 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF695-201 - 515 7.9e-21 73.0 101.3 9 13 0.00023 0.25 12.3 0.7 1 23 380 402 380 403 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF695-201 - 515 7.9e-21 73.0 101.3 10 13 0.00025 0.27 12.2 1.0 1 23 408 430 408 431 0.89 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF695-201 - 515 7.9e-21 73.0 101.3 11 13 0.00034 0.35 11.8 0.7 1 23 436 458 436 459 0.90 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF695-201 - 515 7.9e-21 73.0 101.3 12 13 4e-05 0.042 14.7 1.4 1 23 464 486 464 487 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF695-201 - 515 7.9e-21 73.0 101.3 13 13 1.8e-05 0.019 15.8 0.7 1 23 492 514 492 515 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF695-201 - 515 3.6e-11 42.8 102.3 1 13 0.014 15 5.7 1.7 2 24 156 178 155 181 0.91 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF695-201 - 515 3.6e-11 42.8 102.3 2 13 0.047 50 4.1 0.7 2 10 184 192 184 192 0.89 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF695-201 - 515 3.6e-11 42.8 102.3 3 13 0.016 17 5.5 1.0 2 12 212 222 212 222 0.92 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF695-201 - 515 3.6e-11 42.8 102.3 4 13 0.86 9e+02 0.0 3.0 3 14 241 252 241 255 0.84 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF695-201 - 515 3.6e-11 42.8 102.3 5 13 6.3e-05 0.066 13.2 2.1 2 24 268 290 267 293 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF695-201 - 515 3.6e-11 42.8 102.3 6 13 0.00022 0.23 11.5 1.7 2 25 296 319 296 321 0.89 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF695-201 - 515 3.6e-11 42.8 102.3 7 13 0.00019 0.2 11.7 0.9 2 24 324 346 324 349 0.89 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF695-201 - 515 3.6e-11 42.8 102.3 8 13 0.00043 0.45 10.6 1.0 2 24 352 374 351 377 0.90 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF695-201 - 515 3.6e-11 42.8 102.3 9 13 0.00091 0.96 9.5 0.8 2 24 380 402 380 405 0.90 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF695-201 - 515 3.6e-11 42.8 102.3 10 13 0.0013 1.4 9.0 1.1 2 24 408 430 408 433 0.89 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF695-201 - 515 3.6e-11 42.8 102.3 11 13 5.3e-05 0.056 13.5 0.6 2 24 436 458 436 461 0.90 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF695-201 - 515 3.6e-11 42.8 102.3 12 13 0.0092 9.7 6.3 2.3 2 21 464 483 464 489 0.78 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF695-201 - 515 3.6e-11 42.8 102.3 13 13 0.006 6.3 6.9 0.8 2 12 492 502 492 514 0.87 C2H2-type zinc finger XPA_N PF01286.18 32 ZNF695-201 - 515 3e-09 36.7 76.6 1 13 1.6 1.7e+03 -0.9 0.4 3 11 157 165 155 167 0.80 XPA protein N-terminal XPA_N PF01286.18 32 ZNF695-201 - 515 3e-09 36.7 76.6 2 13 0.52 5.5e+02 0.7 0.4 3 9 185 191 183 200 0.84 XPA protein N-terminal XPA_N PF01286.18 32 ZNF695-201 - 515 3e-09 36.7 76.6 3 13 0.098 1e+02 3.0 1.7 3 12 213 222 211 224 0.88 XPA protein N-terminal XPA_N PF01286.18 32 ZNF695-201 - 515 3e-09 36.7 76.6 4 13 2.7 2.8e+03 -1.6 6.6 3 12 241 250 240 252 0.89 XPA protein N-terminal XPA_N PF01286.18 32 ZNF695-201 - 515 3e-09 36.7 76.6 5 13 0.01 11 6.2 0.6 3 11 269 277 268 285 0.89 XPA protein N-terminal XPA_N PF01286.18 32 ZNF695-201 - 515 3e-09 36.7 76.6 6 13 0.0039 4.1 7.5 0.2 3 12 297 306 295 312 0.90 XPA protein N-terminal XPA_N PF01286.18 32 ZNF695-201 - 515 3e-09 36.7 76.6 7 13 0.0024 2.6 8.2 0.2 3 18 325 341 323 342 0.78 XPA protein N-terminal XPA_N PF01286.18 32 ZNF695-201 - 515 3e-09 36.7 76.6 8 13 0.00084 0.88 9.7 0.3 3 14 353 364 352 370 0.87 XPA protein N-terminal XPA_N PF01286.18 32 ZNF695-201 - 515 3e-09 36.7 76.6 9 13 0.0012 1.3 9.2 0.2 3 17 381 396 379 398 0.77 XPA protein N-terminal XPA_N PF01286.18 32 ZNF695-201 - 515 3e-09 36.7 76.6 10 13 0.0014 1.5 8.9 0.2 3 16 409 423 407 426 0.76 XPA protein N-terminal XPA_N PF01286.18 32 ZNF695-201 - 515 3e-09 36.7 76.6 11 13 0.0012 1.2 9.2 0.2 3 17 437 452 435 454 0.74 XPA protein N-terminal XPA_N PF01286.18 32 ZNF695-201 - 515 3e-09 36.7 76.6 12 13 0.00026 0.28 11.3 0.2 3 14 465 476 463 482 0.86 XPA protein N-terminal XPA_N PF01286.18 32 ZNF695-201 - 515 3e-09 36.7 76.6 13 13 0.00092 0.97 9.5 0.1 3 14 493 504 491 507 0.90 XPA protein N-terminal Zn-ribbon_8 PF09723.10 40 ZNF695-201 - 515 2.1e-08 34.1 92.0 1 13 0.12 1.3e+02 2.8 6.2 6 34 156 191 155 198 0.71 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF695-201 - 515 2.1e-08 34.1 92.0 2 13 0.043 46 4.3 8.2 6 35 184 220 183 224 0.83 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF695-201 - 515 2.1e-08 34.1 92.0 3 13 3.1 3.3e+03 -1.7 13.5 6 33 212 246 211 247 0.68 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF695-201 - 515 2.1e-08 34.1 92.0 4 13 0.049 52 4.1 9.9 7 34 241 275 239 278 0.85 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF695-201 - 515 2.1e-08 34.1 92.0 5 13 0.00017 0.18 12.0 8.2 6 34 268 303 267 306 0.89 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF695-201 - 515 2.1e-08 34.1 92.0 6 13 0.00036 0.38 10.9 7.4 6 34 296 331 293 334 0.84 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF695-201 - 515 2.1e-08 34.1 92.0 7 13 8e-05 0.084 13.0 5.0 6 34 324 359 323 360 0.89 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF695-201 - 515 2.1e-08 34.1 92.0 8 13 9.4e-05 0.099 12.8 6.1 6 35 352 388 350 391 0.89 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF695-201 - 515 2.1e-08 34.1 92.0 9 13 0.00012 0.12 12.5 5.5 6 35 380 416 378 418 0.83 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF695-201 - 515 2.1e-08 34.1 92.0 10 13 0.00016 0.17 12.0 5.4 6 34 408 443 407 446 0.87 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF695-201 - 515 2.1e-08 34.1 92.0 11 13 0.00029 0.31 11.2 5.3 6 34 436 471 435 475 0.86 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF695-201 - 515 2.1e-08 34.1 92.0 12 13 0.0011 1.2 9.4 6.9 6 34 464 499 463 502 0.82 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF695-201 - 515 2.1e-08 34.1 92.0 13 13 0.0016 1.7 8.8 0.7 6 18 492 504 491 514 0.79 Zinc ribbon domain zf_UBZ PF18439.1 32 ZNF695-201 - 515 8.5e-08 31.7 68.6 1 13 0.6 6.3e+02 0.1 0.1 2 12 155 165 154 169 0.77 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF695-201 - 515 8.5e-08 31.7 68.6 2 13 0.53 5.6e+02 0.3 1.2 3 10 184 191 182 195 0.86 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF695-201 - 515 8.5e-08 31.7 68.6 3 13 0.013 14 5.4 0.3 3 12 212 221 210 223 0.84 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF695-201 - 515 8.5e-08 31.7 68.6 4 13 0.79 8.3e+02 -0.3 2.0 4 12 241 249 238 251 0.79 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF695-201 - 515 8.5e-08 31.7 68.6 5 13 0.0045 4.8 6.9 0.9 2 12 267 277 266 281 0.88 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF695-201 - 515 8.5e-08 31.7 68.6 6 13 0.0012 1.3 8.7 0.2 3 15 296 308 294 315 0.78 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF695-201 - 515 8.5e-08 31.7 68.6 7 13 0.0027 2.8 7.6 0.1 3 13 324 334 322 342 0.83 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF695-201 - 515 8.5e-08 31.7 68.6 8 13 0.00015 0.16 11.6 0.5 2 20 351 370 350 371 0.92 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF695-201 - 515 8.5e-08 31.7 68.6 9 13 0.0091 9.6 5.9 0.2 3 12 380 389 378 392 0.88 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF695-201 - 515 8.5e-08 31.7 68.6 10 13 0.0077 8.1 6.1 0.1 3 12 408 417 406 426 0.88 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF695-201 - 515 8.5e-08 31.7 68.6 11 13 0.0078 8.2 6.1 0.1 3 12 436 445 434 448 0.88 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF695-201 - 515 8.5e-08 31.7 68.6 12 13 0.0061 6.4 6.5 0.2 3 12 464 473 462 482 0.82 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF695-201 - 515 8.5e-08 31.7 68.6 13 13 0.0009 0.95 9.1 0.2 3 20 492 510 490 511 0.83 Ubiquitin-Binding Zinc Finger # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF695-201.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF695-201.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF695-201.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF695-201.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF695-201.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:12:44 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- KRAB PF01352.27 42 ZNF695-202 - 133 4.8e-26 90.1 0.1 1 2 1.6e-29 1.5e-25 88.6 0.0 2 42 4 44 3 44 0.98 KRAB box KRAB PF01352.27 42 ZNF695-202 - 133 4.8e-26 90.1 0.1 2 2 0.23 2.1e+03 -1.5 0.0 28 36 107 115 104 117 0.80 KRAB box # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF695-202.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF695-202.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF695-202.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF695-202.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF695-202.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:12:44 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- KRAB PF01352.27 42 ZNF695-203 - 121 3.8e-26 90.5 0.2 1 2 6.8e-30 1.2e-25 88.8 0.0 2 42 4 44 3 44 0.98 KRAB box KRAB PF01352.27 42 ZNF695-203 - 121 3.8e-26 90.5 0.2 2 2 0.1 1.8e+03 -1.4 0.0 28 36 95 103 92 105 0.80 KRAB box # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF695-203.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF695-203.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF695-203.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF695-203.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF695-203.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:12:45 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- KRAB PF01352.27 42 ZNF695-204 - 172 7.6e-26 89.5 0.1 1 2 2.7e-29 2.4e-25 87.9 0.0 2 42 4 44 3 44 0.98 KRAB box KRAB PF01352.27 42 ZNF695-204 - 172 7.6e-26 89.5 0.1 2 2 0.34 3.1e+03 -2.1 0.0 28 36 107 115 105 117 0.81 KRAB box # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF695-204.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF695-204.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF695-204.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF695-204.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF695-204.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:12:45 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- KRAB PF01352.27 42 ZNF695-205 - 88 4.5e-26 90.2 0.0 1 1 6.6e-30 5.9e-26 89.8 0.0 2 42 4 44 3 44 0.98 KRAB box # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF695-205.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF695-205.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF695-205.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF695-205.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF695-205.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:12:46 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF695-206.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF695-206.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF695-206.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF695-206.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF695-206.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:12:46 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZNF696-201 - 374 5.4e-60 197.3 62.4 1 10 0.044 32 5.2 1.8 13 25 123 135 121 136 0.90 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF696-201 - 374 5.4e-60 197.3 62.4 2 10 2.7e-09 2e-06 28.0 1.0 4 26 142 164 141 164 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF696-201 - 374 5.4e-60 197.3 62.4 3 10 1.5e-08 1.1e-05 25.6 0.2 2 25 168 191 167 192 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF696-201 - 374 5.4e-60 197.3 62.4 4 10 1.3e-11 9e-09 35.4 0.1 1 25 195 219 195 220 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF696-201 - 374 5.4e-60 197.3 62.4 5 10 4.8e-08 3.4e-05 24.1 1.3 4 26 226 248 225 248 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF696-201 - 374 5.4e-60 197.3 62.4 6 10 4.9e-11 3.5e-08 33.5 0.6 1 25 251 275 251 276 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF696-201 - 374 5.4e-60 197.3 62.4 7 10 1.2e-09 8.4e-07 29.1 0.1 1 25 279 303 279 304 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF696-201 - 374 5.4e-60 197.3 62.4 8 10 4.9e-09 3.5e-06 27.2 2.3 2 24 308 330 308 331 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF696-201 - 374 5.4e-60 197.3 62.4 9 10 1.4e-09 9.8e-07 28.9 1.3 4 24 338 358 335 359 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF696-201 - 374 5.4e-60 197.3 62.4 10 10 5.5 3.9e+03 -1.4 0.6 1 9 363 371 362 373 0.86 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZNF696-201 - 374 3.2e-45 150.1 63.2 1 9 0.00028 0.2 12.2 0.8 1 23 125 147 125 147 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF696-201 - 374 3.2e-45 150.1 63.2 2 9 3.1e-08 2.3e-05 24.6 1.9 1 23 153 175 153 175 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF696-201 - 374 3.2e-45 150.1 63.2 3 9 1.2e-07 8.9e-05 22.7 0.1 1 23 181 203 181 203 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF696-201 - 374 3.2e-45 150.1 63.2 4 9 7.2e-07 0.00052 20.3 0.1 1 23 209 231 209 231 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF696-201 - 374 3.2e-45 150.1 63.2 5 9 5.7e-06 0.0041 17.5 3.5 1 23 237 259 237 260 0.95 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF696-201 - 374 3.2e-45 150.1 63.2 6 9 1e-08 7.2e-06 26.2 0.3 1 23 265 287 265 287 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF696-201 - 374 3.2e-45 150.1 63.2 7 9 3.5e-08 2.5e-05 24.5 0.7 1 23 293 315 293 315 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF696-201 - 374 3.2e-45 150.1 63.2 8 9 6.6e-07 0.00048 20.4 3.2 1 23 321 343 321 343 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF696-201 - 374 3.2e-45 150.1 63.2 9 9 9.7e-07 0.00069 19.9 2.5 1 23 349 371 349 371 0.98 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZNF696-201 - 374 2.1e-23 80.9 62.9 1 9 0.00089 0.64 11.0 1.2 1 23 125 147 125 148 0.89 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF696-201 - 374 2.1e-23 80.9 62.9 2 9 0.00037 0.26 12.2 2.0 1 23 153 175 153 176 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF696-201 - 374 2.1e-23 80.9 62.9 3 9 0.00013 0.096 13.6 0.2 1 23 181 203 181 204 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF696-201 - 374 2.1e-23 80.9 62.9 4 9 0.005 3.6 8.7 0.1 1 23 209 231 209 232 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF696-201 - 374 2.1e-23 80.9 62.9 5 9 3e-05 0.022 15.6 3.1 1 24 237 260 237 260 0.97 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF696-201 - 374 2.1e-23 80.9 62.9 6 9 7.3e-06 0.0053 17.5 0.4 1 23 265 287 265 288 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF696-201 - 374 2.1e-23 80.9 62.9 7 9 3.8e-05 0.027 15.3 0.6 1 23 293 315 293 316 0.89 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF696-201 - 374 2.1e-23 80.9 62.9 8 9 0.00026 0.19 12.7 2.5 1 23 321 343 321 344 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF696-201 - 374 2.1e-23 80.9 62.9 9 9 0.00011 0.08 13.8 1.4 1 23 349 371 349 372 0.94 C2H2-type zinc finger Zn-ribbon_8 PF09723.10 40 ZNF696-201 - 374 2.1e-08 34.1 39.4 1 8 0.0075 5.4 7.2 4.5 7 34 126 160 124 163 0.87 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF696-201 - 374 2.1e-08 34.1 39.4 2 8 0.00043 0.31 11.2 3.5 6 34 153 188 152 194 0.87 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF696-201 - 374 2.1e-08 34.1 39.4 3 8 0.00022 0.16 12.1 1.7 6 34 181 216 180 222 0.90 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF696-201 - 374 2.1e-08 34.1 39.4 4 8 0.018 13 6.0 0.2 6 17 209 220 208 230 0.80 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF696-201 - 374 2.1e-08 34.1 39.4 5 8 0.0013 0.94 9.6 5.1 6 35 237 273 236 277 0.83 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF696-201 - 374 2.1e-08 34.1 39.4 6 8 0.00019 0.14 12.3 3.6 6 38 265 304 264 304 0.87 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF696-201 - 374 2.1e-08 34.1 39.4 7 8 3.4e-05 0.024 14.7 1.2 6 37 293 331 292 334 0.87 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF696-201 - 374 2.1e-08 34.1 39.4 8 8 0.0092 6.6 6.9 0.1 6 16 349 359 348 369 0.83 Zinc ribbon domain zf_UBZ PF18439.1 32 ZNF696-201 - 374 8.3e-08 31.7 26.6 1 9 0.089 64 3.3 0.2 3 20 125 143 123 144 0.81 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF696-201 - 374 8.3e-08 31.7 26.6 2 9 0.0094 6.8 6.4 0.1 3 14 153 164 151 171 0.85 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF696-201 - 374 8.3e-08 31.7 26.6 3 9 0.013 9.1 6.0 0.0 3 15 181 193 179 200 0.75 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF696-201 - 374 8.3e-08 31.7 26.6 4 9 0.03 21 4.8 0.1 3 12 209 218 207 227 0.85 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF696-201 - 374 8.3e-08 31.7 26.6 5 9 0.0052 3.7 7.2 0.0 3 15 237 249 235 255 0.87 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF696-201 - 374 8.3e-08 31.7 26.6 6 9 0.002 1.4 8.5 0.2 3 21 265 284 263 284 0.91 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF696-201 - 374 8.3e-08 31.7 26.6 7 9 0.011 8 6.2 0.0 3 20 293 311 291 312 0.82 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF696-201 - 374 8.3e-08 31.7 26.6 8 9 2.3 1.6e+03 -1.2 0.1 4 11 322 329 320 332 0.80 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF696-201 - 374 8.3e-08 31.7 26.6 9 9 0.12 89 2.8 0.1 3 13 349 359 347 368 0.76 Ubiquitin-Binding Zinc Finger XPA_N PF01286.18 32 ZNF696-201 - 374 3.7e-07 30.1 33.1 1 9 6.2 4.5e+03 -2.2 1.2 4 13 127 136 126 137 0.81 XPA protein N-terminal XPA_N PF01286.18 32 ZNF696-201 - 374 3.7e-07 30.1 33.1 2 9 0.02 15 5.8 0.2 3 14 154 165 152 166 0.89 XPA protein N-terminal XPA_N PF01286.18 32 ZNF696-201 - 374 3.7e-07 30.1 33.1 3 9 0.00078 0.56 10.3 0.0 4 15 183 194 180 199 0.90 XPA protein N-terminal XPA_N PF01286.18 32 ZNF696-201 - 374 3.7e-07 30.1 33.1 4 9 0.095 68 3.6 0.1 4 12 211 219 208 220 0.88 XPA protein N-terminal XPA_N PF01286.18 32 ZNF696-201 - 374 3.7e-07 30.1 33.1 5 9 0.012 8.7 6.5 0.1 4 14 239 249 237 250 0.92 XPA protein N-terminal XPA_N PF01286.18 32 ZNF696-201 - 374 3.7e-07 30.1 33.1 6 9 0.0023 1.6 8.8 0.2 3 14 266 277 264 283 0.88 XPA protein N-terminal XPA_N PF01286.18 32 ZNF696-201 - 374 3.7e-07 30.1 33.1 7 9 0.012 8.9 6.5 0.2 4 16 295 308 293 311 0.76 XPA protein N-terminal XPA_N PF01286.18 32 ZNF696-201 - 374 3.7e-07 30.1 33.1 8 9 0.81 5.8e+02 0.6 0.1 3 11 322 330 320 332 0.86 XPA protein N-terminal XPA_N PF01286.18 32 ZNF696-201 - 374 3.7e-07 30.1 33.1 9 9 0.0088 6.3 6.9 0.0 3 15 350 362 348 366 0.90 XPA protein N-terminal # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF696-201.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF696-201.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF696-201.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF696-201.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF696-201.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:12:46 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF696-203.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF696-203.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF696-203.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF696-203.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF696-203.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:12:47 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF696-204.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF696-204.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF696-204.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF696-204.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF696-204.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:12:47 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF696-205.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF696-205.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF696-205.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF696-205.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF696-205.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:12:47 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF696-206.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF696-206.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF696-206.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF696-206.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF696-206.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:12:48 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-C2H2 PF00096.26 23 ZNF697-201 - 545 2.3e-56 185.2 75.2 1 11 6.1e-05 0.042 14.3 0.0 3 23 191 211 189 211 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF697-201 - 545 2.3e-56 185.2 75.2 2 11 2.1e-08 1.5e-05 25.2 0.8 1 23 261 283 261 283 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF697-201 - 545 2.3e-56 185.2 75.2 3 11 1.7e-05 0.012 16.1 0.3 3 23 291 311 290 311 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF697-201 - 545 2.3e-56 185.2 75.2 4 11 2.7e-07 0.00019 21.7 0.4 1 23 317 339 317 339 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF697-201 - 545 2.3e-56 185.2 75.2 5 11 1.9e-08 1.3e-05 25.4 0.4 1 23 353 375 353 375 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF697-201 - 545 2.3e-56 185.2 75.2 6 11 2.5e-06 0.0018 18.7 0.4 3 23 383 403 383 403 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF697-201 - 545 2.3e-56 185.2 75.2 7 11 5.2e-07 0.00036 20.8 3.1 1 23 409 431 409 431 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF697-201 - 545 2.3e-56 185.2 75.2 8 11 1.6e-08 1.1e-05 25.6 0.7 1 23 437 459 437 459 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF697-201 - 545 2.3e-56 185.2 75.2 9 11 2.4e-07 0.00017 21.9 2.4 1 23 465 487 465 487 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF697-201 - 545 2.3e-56 185.2 75.2 10 11 9.9e-08 6.8e-05 23.1 1.5 1 23 493 515 493 515 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF697-201 - 545 2.3e-56 185.2 75.2 11 11 2.1e-06 0.0014 18.9 3.1 1 23 521 543 521 543 0.97 Zinc finger, C2H2 type zf-H2C2_2 PF13465.6 26 ZNF697-201 - 545 5.2e-55 181.5 87.3 1 11 3.3 2.3e+03 -0.7 3.3 17 24 191 198 143 199 0.49 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF697-201 - 545 5.2e-55 181.5 87.3 2 11 0.0014 0.97 10.0 0.5 12 25 258 271 256 272 0.90 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF697-201 - 545 5.2e-55 181.5 87.3 3 11 1.4e-06 0.00094 19.5 0.1 2 25 276 299 275 299 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF697-201 - 545 5.2e-55 181.5 87.3 4 11 1.7e-10 1.2e-07 31.9 1.0 2 25 304 327 303 327 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF697-201 - 545 5.2e-55 181.5 87.3 5 11 0.009 6.2 7.4 0.1 2 25 328 363 327 364 0.60 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF697-201 - 545 5.2e-55 181.5 87.3 6 11 6.5e-08 4.5e-05 23.7 1.2 1 25 367 391 367 391 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF697-201 - 545 5.2e-55 181.5 87.3 7 11 9.9e-11 6.9e-08 32.6 0.2 1 25 395 419 395 419 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF697-201 - 545 5.2e-55 181.5 87.3 8 11 7.8e-08 5.4e-05 23.4 2.0 2 25 424 447 423 448 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF697-201 - 545 5.2e-55 181.5 87.3 9 11 3.3e-10 2.2e-07 31.0 1.0 1 25 451 475 451 476 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF697-201 - 545 5.2e-55 181.5 87.3 10 11 1.9e-11 1.3e-08 34.9 0.3 2 24 480 502 479 504 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF697-201 - 545 5.2e-55 181.5 87.3 11 11 3.5e-08 2.4e-05 24.5 2.5 1 25 507 531 507 532 0.94 Zinc-finger double domain zf-C2H2_4 PF13894.6 24 ZNF697-201 - 545 1.5e-33 112.5 73.4 1 11 0.00021 0.14 13.1 0.1 2 23 190 211 189 212 0.88 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF697-201 - 545 1.5e-33 112.5 73.4 2 11 1.4e-05 0.0095 16.7 0.5 1 23 261 283 261 284 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF697-201 - 545 1.5e-33 112.5 73.4 3 11 0.0017 1.2 10.2 0.4 3 23 291 311 290 312 0.91 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF697-201 - 545 1.5e-33 112.5 73.4 4 11 4.9e-06 0.0034 18.1 0.4 1 23 317 339 317 340 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF697-201 - 545 1.5e-33 112.5 73.4 5 11 5.1e-05 0.035 14.9 0.4 1 23 353 375 353 376 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF697-201 - 545 1.5e-33 112.5 73.4 6 11 0.0021 1.4 9.9 1.0 3 23 383 403 381 404 0.88 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF697-201 - 545 1.5e-33 112.5 73.4 7 11 2.3e-05 0.016 16.0 2.7 1 23 409 431 409 432 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF697-201 - 545 1.5e-33 112.5 73.4 8 11 2.1e-05 0.014 16.2 0.6 1 23 437 459 437 460 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF697-201 - 545 1.5e-33 112.5 73.4 9 11 5.8e-06 0.004 17.9 1.7 1 23 465 487 465 488 0.97 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF697-201 - 545 1.5e-33 112.5 73.4 10 11 4.3e-05 0.03 15.1 1.0 1 23 493 515 493 516 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF697-201 - 545 1.5e-33 112.5 73.4 11 11 0.00083 0.57 11.2 2.3 1 23 521 543 521 544 0.94 C2H2-type zinc finger Zn-ribbon_8 PF09723.10 40 ZNF697-201 - 545 1.2e-09 38.1 41.6 1 9 0.0048 3.3 7.9 0.0 19 34 181 196 175 199 0.63 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF697-201 - 545 1.2e-09 38.1 41.6 2 9 0.0092 6.4 7.0 2.6 6 33 261 295 260 296 0.79 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF697-201 - 545 1.2e-09 38.1 41.6 3 9 2.8e-05 0.019 15.1 0.2 8 34 291 324 290 327 0.88 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF697-201 - 545 1.2e-09 38.1 41.6 4 9 0.00096 0.66 10.1 1.2 6 35 353 389 352 393 0.90 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF697-201 - 545 1.2e-09 38.1 41.6 5 9 0.00064 0.44 10.7 2.6 8 34 383 416 382 420 0.92 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF697-201 - 545 1.2e-09 38.1 41.6 6 9 0.0059 4.1 7.6 4.6 6 34 409 444 408 448 0.72 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF697-201 - 545 1.2e-09 38.1 41.6 7 9 0.06 41 4.4 0.5 6 15 437 446 436 452 0.89 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF697-201 - 545 1.2e-09 38.1 41.6 8 9 0.0053 3.7 7.8 4.0 6 34 465 500 464 502 0.86 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF697-201 - 545 1.2e-09 38.1 41.6 9 9 0.0041 2.8 8.1 0.6 6 34 493 528 492 533 0.86 Zinc ribbon domain zf-C2H2_jaz PF12171.8 27 ZNF697-201 - 545 5.7e-09 36.0 22.6 1 11 8.8 6.1e+03 -2.3 0.0 4 21 191 208 190 209 0.75 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF697-201 - 545 5.7e-09 36.0 22.6 2 11 0.001 0.69 10.3 0.0 2 22 261 281 260 281 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF697-201 - 545 5.7e-09 36.0 22.6 3 11 2.9 2e+03 -0.8 0.1 4 21 291 308 291 309 0.79 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF697-201 - 545 5.7e-09 36.0 22.6 4 11 5.5 3.8e+03 -1.7 0.0 2 20 317 335 316 337 0.62 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF697-201 - 545 5.7e-09 36.0 22.6 5 11 0.021 15 6.0 0.0 2 22 353 373 352 373 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF697-201 - 545 5.7e-09 36.0 22.6 6 11 0.63 4.3e+02 1.4 0.0 4 22 383 401 381 401 0.90 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF697-201 - 545 5.7e-09 36.0 22.6 7 11 1.4 9.8e+02 0.2 0.3 2 23 409 430 408 432 0.74 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF697-201 - 545 5.7e-09 36.0 22.6 8 11 0.0033 2.3 8.6 0.0 2 22 437 457 436 457 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF697-201 - 545 5.7e-09 36.0 22.6 9 11 0.0022 1.5 9.2 0.3 2 24 465 487 464 487 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF697-201 - 545 5.7e-09 36.0 22.6 10 11 0.0049 3.3 8.1 0.1 2 21 493 512 492 513 0.88 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF697-201 - 545 5.7e-09 36.0 22.6 11 11 10 6.9e+03 -2.5 0.6 3 20 522 539 519 541 0.60 Zinc-finger double-stranded RNA-binding zf_UBZ PF18439.1 32 ZNF697-201 - 545 2.6e-08 33.3 35.3 1 11 0.0031 2.1 8.0 0.0 4 21 190 208 188 208 0.89 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF697-201 - 545 2.6e-08 33.3 35.3 2 11 0.096 66 3.2 0.0 3 14 261 272 259 280 0.81 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF697-201 - 545 2.6e-08 33.3 35.3 3 11 0.026 18 5.0 0.0 4 13 290 299 288 308 0.79 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF697-201 - 545 2.6e-08 33.3 35.3 4 11 0.0008 0.55 9.9 0.1 3 20 317 335 315 336 0.86 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF697-201 - 545 2.6e-08 33.3 35.3 5 11 0.26 1.8e+02 1.8 0.1 3 12 353 362 352 372 0.83 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF697-201 - 545 2.6e-08 33.3 35.3 6 11 0.16 1.1e+02 2.5 0.1 5 13 383 391 381 400 0.81 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF697-201 - 545 2.6e-08 33.3 35.3 7 11 0.0049 3.4 7.3 0.1 3 15 409 421 407 427 0.86 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF697-201 - 545 2.6e-08 33.3 35.3 8 11 0.089 61 3.3 0.1 3 11 437 445 435 451 0.88 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF697-201 - 545 2.6e-08 33.3 35.3 9 11 0.021 15 5.3 0.2 3 21 465 484 463 484 0.89 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF697-201 - 545 2.6e-08 33.3 35.3 10 11 0.022 15 5.3 0.1 3 15 493 505 491 511 0.85 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF697-201 - 545 2.6e-08 33.3 35.3 11 11 2.9 2e+03 -1.5 0.1 4 12 522 530 520 540 0.78 Ubiquitin-Binding Zinc Finger ADK_lid PF05191.14 36 ZNF697-201 - 545 2.7e-08 33.6 14.3 1 6 0.016 11 6.1 0.0 3 12 190 199 189 211 0.89 Adenylate kinase, active site lid ADK_lid PF05191.14 36 ZNF697-201 - 545 2.7e-08 33.6 14.3 2 6 0.001 0.7 9.9 0.2 4 36 263 303 261 303 0.78 Adenylate kinase, active site lid ADK_lid PF05191.14 36 ZNF697-201 - 545 2.7e-08 33.6 14.3 3 6 0.023 16 5.6 0.1 20 35 351 366 317 395 0.50 Adenylate kinase, active site lid ADK_lid PF05191.14 36 ZNF697-201 - 545 2.7e-08 33.6 14.3 4 6 0.0039 2.7 8.0 1.0 3 29 410 444 409 448 0.74 Adenylate kinase, active site lid ADK_lid PF05191.14 36 ZNF697-201 - 545 2.7e-08 33.6 14.3 5 6 0.24 1.7e+02 2.3 0.4 3 12 438 451 437 474 0.68 Adenylate kinase, active site lid ADK_lid PF05191.14 36 ZNF697-201 - 545 2.7e-08 33.6 14.3 6 6 0.034 23 5.1 0.0 3 29 494 528 493 531 0.76 Adenylate kinase, active site lid DZR PF12773.7 49 ZNF697-201 - 545 1.5e-07 31.3 31.7 1 2 0.0067 4.6 7.3 0.0 27 44 187 204 158 207 0.81 Double zinc ribbon DZR PF12773.7 49 ZNF697-201 - 545 1.5e-07 31.3 31.7 2 2 0.006 4.2 7.5 4.8 1 36 467 528 462 538 0.66 Double zinc ribbon # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF697-201.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF697-201.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF697-201.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF697-201.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF697-201.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:12:48 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZNF700-201 - 742 1.2e-144 465.0 173.5 1 21 0.3 3.3e+02 2.0 0.4 11 18 160 167 150 170 0.84 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF700-201 - 742 1.2e-144 465.0 173.5 2 21 2.1e-08 2.3e-05 24.6 0.5 7 24 186 203 185 204 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF700-201 - 742 1.2e-144 465.0 173.5 3 21 1.2e-07 0.00013 22.2 1.1 3 25 210 232 208 233 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF700-201 - 742 1.2e-144 465.0 173.5 4 21 1.1e-10 1.3e-07 31.8 1.7 5 25 240 260 238 261 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF700-201 - 742 1.2e-144 465.0 173.5 5 21 2.2e-11 2.5e-08 34.0 1.8 2 25 265 288 264 289 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF700-201 - 742 1.2e-144 465.0 173.5 6 21 1.9e-10 2.2e-07 31.0 3.0 4 25 295 316 292 317 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF700-201 - 742 1.2e-144 465.0 173.5 7 21 5.7e-08 6.4e-05 23.2 0.7 1 19 320 338 320 341 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF700-201 - 742 1.2e-144 465.0 173.5 8 21 2.8e-06 0.0032 17.8 0.2 2 24 349 371 348 373 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF700-201 - 742 1.2e-144 465.0 173.5 9 21 1.9e-09 2.1e-06 27.9 2.8 2 25 377 400 376 400 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF700-201 - 742 1.2e-144 465.0 173.5 10 21 4.8e-12 5.4e-09 36.1 1.6 2 25 405 428 404 429 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF700-201 - 742 1.2e-144 465.0 173.5 11 21 1.4e-09 1.5e-06 28.3 0.4 2 25 433 456 432 457 0.89 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF700-201 - 742 1.2e-144 465.0 173.5 12 21 1.6e-10 1.8e-07 31.2 1.1 1 25 460 484 460 485 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF700-201 - 742 1.2e-144 465.0 173.5 13 21 9.8e-06 0.011 16.1 1.3 10 24 493 517 484 519 0.70 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF700-201 - 742 1.2e-144 465.0 173.5 14 21 9.3e-10 1e-06 28.8 3.4 2 25 523 546 522 547 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF700-201 - 742 1.2e-144 465.0 173.5 15 21 8.5e-13 9.5e-10 38.5 1.6 1 25 550 574 550 575 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF700-201 - 742 1.2e-144 465.0 173.5 16 21 2.4e-11 2.6e-08 33.9 4.4 1 25 578 602 578 603 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF700-201 - 742 1.2e-144 465.0 173.5 17 21 2e-11 2.3e-08 34.1 1.4 1 25 606 630 606 631 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF700-201 - 742 1.2e-144 465.0 173.5 18 21 1.7e-11 1.9e-08 34.3 1.2 1 24 634 657 634 657 0.98 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF700-201 - 742 1.2e-144 465.0 173.5 19 21 1.2e-08 1.4e-05 25.3 2.5 3 26 664 687 662 687 0.90 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF700-201 - 742 1.2e-144 465.0 173.5 20 21 1.1e-08 1.2e-05 25.4 1.0 2 25 691 714 691 715 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF700-201 - 742 1.2e-144 465.0 173.5 21 21 2.1e-09 2.3e-06 27.7 1.0 5 25 722 742 718 742 0.93 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZNF700-201 - 742 2.7e-75 244.9 175.3 1 20 1.2 1.3e+03 0.1 0.0 5 12 99 106 97 107 0.87 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF700-201 - 742 2.7e-75 244.9 175.3 2 20 4.3e-06 0.0048 17.3 2.0 1 23 194 216 194 216 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF700-201 - 742 2.7e-75 244.9 175.3 3 20 4.1e-05 0.046 14.2 3.7 1 23 222 244 222 244 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF700-201 - 742 2.7e-75 244.9 175.3 4 20 4.6e-08 5.2e-05 23.5 0.8 1 23 250 272 250 272 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF700-201 - 742 2.7e-75 244.9 175.3 5 20 4.4e-05 0.049 14.1 6.3 1 23 278 300 278 300 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF700-201 - 742 2.7e-75 244.9 175.3 6 20 9.6e-09 1.1e-05 25.6 1.1 1 23 306 328 306 328 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF700-201 - 742 2.7e-75 244.9 175.3 7 20 1.2e-06 0.0014 19.0 1.6 1 23 362 384 362 384 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF700-201 - 742 2.7e-75 244.9 175.3 8 20 2.8e-06 0.0032 17.8 1.8 1 23 390 412 390 412 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF700-201 - 742 2.7e-75 244.9 175.3 9 20 1.6e-07 0.00018 21.8 0.2 1 23 418 440 418 440 0.94 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF700-201 - 742 2.7e-75 244.9 175.3 10 20 9e-09 1e-05 25.7 1.9 1 23 446 468 446 468 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF700-201 - 742 2.7e-75 244.9 175.3 11 20 1.7e-06 0.0019 18.6 1.4 1 23 474 498 474 498 0.94 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF700-201 - 742 2.7e-75 244.9 175.3 12 20 1.3e-05 0.015 15.7 1.6 1 23 508 530 508 530 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF700-201 - 742 2.7e-75 244.9 175.3 13 20 0.00092 1 9.9 5.9 1 23 536 558 536 558 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF700-201 - 742 2.7e-75 244.9 175.3 14 20 2.4e-08 2.7e-05 24.4 2.3 1 23 564 586 564 586 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF700-201 - 742 2.7e-75 244.9 175.3 15 20 7.3e-07 0.00081 19.7 2.2 1 23 592 614 592 614 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF700-201 - 742 2.7e-75 244.9 175.3 16 20 7.9e-09 8.9e-06 25.9 0.6 1 23 620 642 620 642 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF700-201 - 742 2.7e-75 244.9 175.3 17 20 3.2e-05 0.036 14.5 3.6 1 23 648 670 648 670 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF700-201 - 742 2.7e-75 244.9 175.3 18 20 0.0001 0.11 13.0 0.6 1 23 676 698 676 698 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF700-201 - 742 2.7e-75 244.9 175.3 19 20 3.6e-07 0.00041 20.7 1.7 1 23 704 726 704 726 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF700-201 - 742 2.7e-75 244.9 175.3 20 20 0.002 2.3 8.9 0.7 1 11 732 742 732 742 0.94 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZNF700-201 - 742 1.8e-58 190.1 161.1 1 20 1.9 2.2e+03 0.0 0.0 4 12 98 106 98 110 0.81 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF700-201 - 742 1.8e-58 190.1 161.1 2 20 1.6e-05 0.017 15.9 1.7 1 23 194 216 194 217 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF700-201 - 742 1.8e-58 190.1 161.1 3 20 6e-05 0.067 14.1 3.1 1 23 222 244 222 245 0.97 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF700-201 - 742 1.8e-58 190.1 161.1 4 20 1.8e-06 0.002 18.8 0.7 1 23 250 272 250 273 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF700-201 - 742 1.8e-58 190.1 161.1 5 20 0.00014 0.15 12.9 5.2 1 23 278 300 278 301 0.97 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF700-201 - 742 1.8e-58 190.1 161.1 6 20 8.4e-07 0.00094 19.8 1.0 1 23 306 328 306 329 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF700-201 - 742 1.8e-58 190.1 161.1 7 20 1.1e-06 0.0013 19.4 1.3 1 23 362 384 362 385 0.97 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF700-201 - 742 1.8e-58 190.1 161.1 8 20 3.6e-05 0.04 14.8 1.4 1 23 390 412 390 413 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF700-201 - 742 1.8e-58 190.1 161.1 9 20 3.2e-05 0.036 14.9 0.3 1 19 418 436 418 440 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF700-201 - 742 1.8e-58 190.1 161.1 10 20 8.1e-05 0.091 13.6 1.3 1 20 446 465 446 469 0.89 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF700-201 - 742 1.8e-58 190.1 161.1 11 20 7.1e-05 0.079 13.8 0.5 1 22 474 495 474 497 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF700-201 - 742 1.8e-58 190.1 161.1 12 20 4.8e-06 0.0053 17.5 1.4 1 23 508 530 508 531 0.97 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF700-201 - 742 1.8e-58 190.1 161.1 13 20 4.1e-06 0.0045 17.7 4.9 1 23 536 558 536 559 0.97 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF700-201 - 742 1.8e-58 190.1 161.1 14 20 2.6e-06 0.003 18.3 1.8 1 23 564 586 564 587 0.97 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF700-201 - 742 1.8e-58 190.1 161.1 15 20 2.2e-05 0.025 15.4 2.0 1 21 592 612 592 615 0.89 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF700-201 - 742 1.8e-58 190.1 161.1 16 20 2.3e-06 0.0026 18.5 0.6 1 23 620 642 620 643 0.97 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF700-201 - 742 1.8e-58 190.1 161.1 17 20 0.0016 1.8 9.6 4.2 1 23 648 670 648 671 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF700-201 - 742 1.8e-58 190.1 161.1 18 20 2.1e-05 0.024 15.5 0.3 1 23 676 698 676 699 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF700-201 - 742 1.8e-58 190.1 161.1 19 20 7e-05 0.079 13.8 1.4 1 23 704 726 704 727 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF700-201 - 742 1.8e-58 190.1 161.1 20 20 0.089 1e+02 4.2 0.4 1 11 732 742 732 742 0.92 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF700-201 - 742 1.5e-34 117.3 175.3 1 19 0.0039 4.4 7.4 0.8 2 11 194 203 194 203 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF700-201 - 742 1.5e-34 117.3 175.3 2 19 0.0056 6.2 6.9 3.4 2 14 222 234 221 235 0.92 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF700-201 - 742 1.5e-34 117.3 175.3 3 19 8.5e-05 0.095 12.7 0.8 2 13 250 261 250 274 0.80 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF700-201 - 742 1.5e-34 117.3 175.3 4 19 0.0077 8.6 6.5 4.9 2 25 278 301 278 303 0.79 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF700-201 - 742 1.5e-34 117.3 175.3 5 19 7.9e-06 0.0088 16.0 2.5 2 25 306 329 306 331 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF700-201 - 742 1.5e-34 117.3 175.3 6 19 0.00014 0.15 12.1 3.1 2 24 362 384 362 387 0.95 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF700-201 - 742 1.5e-34 117.3 175.3 7 19 0.00094 1 9.4 0.7 1 12 389 400 389 400 0.91 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF700-201 - 742 1.5e-34 117.3 175.3 8 19 8.6e-05 0.096 12.7 0.4 2 17 418 433 418 440 0.83 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF700-201 - 742 1.5e-34 117.3 175.3 9 19 2.3e-05 0.026 14.5 2.0 2 24 446 468 446 471 0.92 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF700-201 - 742 1.5e-34 117.3 175.3 10 19 0.00011 0.12 12.4 1.2 2 18 474 490 474 498 0.83 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF700-201 - 742 1.5e-34 117.3 175.3 11 19 0.00043 0.48 10.5 2.8 2 24 508 530 508 533 0.95 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF700-201 - 742 1.5e-34 117.3 175.3 12 19 0.00044 0.49 10.5 5.3 2 24 536 558 536 561 0.95 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF700-201 - 742 1.5e-34 117.3 175.3 13 19 1.2e-06 0.0014 18.6 2.4 2 24 564 586 564 589 0.95 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF700-201 - 742 1.5e-34 117.3 175.3 14 19 7.4e-05 0.083 12.9 3.5 2 24 592 614 592 617 0.95 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF700-201 - 742 1.5e-34 117.3 175.3 15 19 3e-07 0.00034 20.5 1.1 2 24 620 642 620 645 0.95 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF700-201 - 742 1.5e-34 117.3 175.3 16 19 0.033 37 4.5 4.5 2 25 648 671 648 673 0.75 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF700-201 - 742 1.5e-34 117.3 175.3 17 19 0.0087 9.8 6.3 0.5 2 24 676 698 676 699 0.82 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF700-201 - 742 1.5e-34 117.3 175.3 18 19 7.1e-07 0.0008 19.3 3.5 1 26 703 728 703 729 0.95 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF700-201 - 742 1.5e-34 117.3 175.3 19 19 0.027 31 4.7 0.6 2 12 732 742 732 742 0.94 C2H2-type zinc finger zf-C2H2_jaz PF12171.8 27 ZNF700-201 - 742 1.3e-22 79.5 128.6 1 19 0.0047 5.3 7.4 0.1 2 21 194 213 193 214 0.86 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF700-201 - 742 1.3e-22 79.5 128.6 2 19 0.032 36 4.8 2.5 2 24 222 244 221 244 0.90 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF700-201 - 742 1.3e-22 79.5 128.6 3 19 0.0033 3.7 7.9 0.3 2 24 250 272 249 272 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF700-201 - 742 1.3e-22 79.5 128.6 4 19 0.00012 0.13 12.6 3.9 2 24 278 300 277 300 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF700-201 - 742 1.3e-22 79.5 128.6 5 19 0.012 13 6.2 0.2 4 24 308 328 305 331 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF700-201 - 742 1.3e-22 79.5 128.6 6 19 2.5e-07 0.00028 21.1 1.4 2 24 362 384 361 384 0.95 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF700-201 - 742 1.3e-22 79.5 128.6 7 19 0.018 20 5.6 0.8 2 22 390 410 389 410 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF700-201 - 742 1.3e-22 79.5 128.6 8 19 0.00026 0.29 11.5 0.1 2 20 418 436 417 436 0.95 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF700-201 - 742 1.3e-22 79.5 128.6 9 19 0.0042 4.7 7.6 0.1 2 20 446 464 445 468 0.90 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF700-201 - 742 1.3e-22 79.5 128.6 10 19 0.0004 0.45 10.9 1.1 2 26 474 498 473 499 0.96 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF700-201 - 742 1.3e-22 79.5 128.6 11 19 5.6e-07 0.00063 20.0 1.9 2 24 508 530 507 530 0.95 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF700-201 - 742 1.3e-22 79.5 128.6 12 19 7.4 8.3e+03 -2.7 3.2 2 23 536 557 535 558 0.81 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF700-201 - 742 1.3e-22 79.5 128.6 13 19 5.2e-05 0.058 13.7 0.3 2 24 564 586 563 586 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF700-201 - 742 1.3e-22 79.5 128.6 14 19 0.033 37 4.8 0.7 2 20 592 610 591 614 0.91 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF700-201 - 742 1.3e-22 79.5 128.6 15 19 7.7e-06 0.0086 16.3 0.2 2 24 620 642 619 642 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF700-201 - 742 1.3e-22 79.5 128.6 16 19 0.38 4.2e+02 1.4 4.0 2 22 648 668 647 671 0.79 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF700-201 - 742 1.3e-22 79.5 128.6 17 19 0.043 48 4.4 0.1 2 20 676 694 675 699 0.86 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF700-201 - 742 1.3e-22 79.5 128.6 18 19 0.12 1.4e+02 2.9 0.7 2 12 704 714 703 714 0.90 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF700-201 - 742 1.3e-22 79.5 128.6 19 19 0.56 6.3e+02 0.8 0.2 2 12 732 742 731 742 0.88 Zinc-finger double-stranded RNA-binding KRAB PF01352.27 42 ZNF700-201 - 742 1.3e-21 76.0 0.1 1 1 1.7e-24 1.9e-21 75.4 0.1 1 42 23 64 23 64 0.98 KRAB box Zn-ribbon_8 PF09723.10 40 ZNF700-201 - 742 1.7e-08 34.4 132.4 1 19 2.1 2.3e+03 -1.2 0.1 10 29 99 126 98 128 0.64 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF700-201 - 742 1.7e-08 34.4 132.4 2 19 0.044 50 4.1 0.1 6 16 194 204 191 217 0.82 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF700-201 - 742 1.7e-08 34.4 132.4 3 19 0.0015 1.7 8.9 6.0 6 34 222 257 221 258 0.81 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF700-201 - 742 1.7e-08 34.4 132.4 4 19 0.0047 5.3 7.2 5.7 6 33 250 284 249 285 0.77 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF700-201 - 742 1.7e-08 34.4 132.4 5 19 0.0043 4.8 7.4 6.6 6 34 278 313 277 317 0.74 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF700-201 - 742 1.7e-08 34.4 132.4 6 19 0.0098 11 6.2 1.1 6 16 306 316 301 338 0.75 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF700-201 - 742 1.7e-08 34.4 132.4 7 19 0.033 37 4.5 0.3 6 21 362 377 361 385 0.75 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF700-201 - 742 1.7e-08 34.4 132.4 8 19 5.7e-05 0.064 13.4 4.6 6 36 390 427 389 430 0.74 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF700-201 - 742 1.7e-08 34.4 132.4 9 19 0.00054 0.61 10.3 5.6 6 36 418 455 417 458 0.85 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF700-201 - 742 1.7e-08 34.4 132.4 10 19 0.00048 0.54 10.4 6.2 6 36 446 483 444 487 0.82 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF700-201 - 742 1.7e-08 34.4 132.4 11 19 0.0046 5.2 7.3 0.9 6 19 474 490 472 498 0.74 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF700-201 - 742 1.7e-08 34.4 132.4 12 19 0.15 1.6e+02 2.5 5.7 6 35 508 544 507 546 0.58 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF700-201 - 742 1.7e-08 34.4 132.4 13 19 0.015 17 5.7 9.1 6 36 536 573 534 575 0.79 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF700-201 - 742 1.7e-08 34.4 132.4 14 19 0.00079 0.89 9.7 6.9 6 34 564 599 563 610 0.86 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF700-201 - 742 1.7e-08 34.4 132.4 15 19 0.0016 1.8 8.8 7.0 6 36 592 629 591 631 0.82 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF700-201 - 742 1.7e-08 34.4 132.4 16 19 0.0027 3 8.0 6.2 6 34 620 655 619 657 0.80 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF700-201 - 742 1.7e-08 34.4 132.4 17 19 0.025 28 4.9 8.9 6 34 648 683 646 691 0.77 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF700-201 - 742 1.7e-08 34.4 132.4 18 19 0.0093 10 6.3 0.2 6 17 676 690 675 698 0.78 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF700-201 - 742 1.7e-08 34.4 132.4 19 19 0.00023 0.26 11.5 5.6 6 34 704 739 703 742 0.71 Zinc ribbon domain # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF700-201.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF700-201.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF700-201.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF700-201.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF700-201.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:12:49 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZNF700-202 - 724 6.7e-145 465.7 173.5 1 21 0.32 3.2e+02 2.0 0.4 11 18 142 149 132 152 0.84 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF700-202 - 724 6.7e-145 465.7 173.5 2 21 2.3e-08 2.3e-05 24.6 0.5 7 24 168 185 167 186 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF700-202 - 724 6.7e-145 465.7 173.5 3 21 1.3e-07 0.00013 22.2 1.1 3 25 192 214 190 215 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF700-202 - 724 6.7e-145 465.7 173.5 4 21 1.2e-10 1.2e-07 31.8 1.7 5 25 222 242 220 243 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF700-202 - 724 6.7e-145 465.7 173.5 5 21 2.4e-11 2.4e-08 34.0 1.8 2 25 247 270 246 271 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF700-202 - 724 6.7e-145 465.7 173.5 6 21 2.1e-10 2.1e-07 31.0 3.0 4 25 277 298 274 299 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF700-202 - 724 6.7e-145 465.7 173.5 7 21 6.3e-08 6.2e-05 23.2 0.7 1 19 302 320 302 323 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF700-202 - 724 6.7e-145 465.7 173.5 8 21 3.1e-06 0.0031 17.9 0.2 2 24 331 353 330 355 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF700-202 - 724 6.7e-145 465.7 173.5 9 21 2.1e-09 2e-06 27.9 2.8 2 25 359 382 358 382 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF700-202 - 724 6.7e-145 465.7 173.5 10 21 5.2e-12 5.2e-09 36.1 1.6 2 25 387 410 386 411 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF700-202 - 724 6.7e-145 465.7 173.5 11 21 1.5e-09 1.5e-06 28.4 0.4 2 25 415 438 414 439 0.89 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF700-202 - 724 6.7e-145 465.7 173.5 12 21 1.8e-10 1.8e-07 31.3 1.1 1 25 442 466 442 467 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF700-202 - 724 6.7e-145 465.7 173.5 13 21 1.1e-05 0.011 16.2 1.3 10 24 475 499 466 501 0.70 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF700-202 - 724 6.7e-145 465.7 173.5 14 21 1e-09 1e-06 28.9 3.4 2 25 505 528 504 529 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF700-202 - 724 6.7e-145 465.7 173.5 15 21 9.3e-13 9.2e-10 38.5 1.6 1 25 532 556 532 557 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF700-202 - 724 6.7e-145 465.7 173.5 16 21 2.6e-11 2.6e-08 33.9 4.4 1 25 560 584 560 585 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF700-202 - 724 6.7e-145 465.7 173.5 17 21 2.2e-11 2.2e-08 34.1 1.4 1 25 588 612 588 613 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF700-202 - 724 6.7e-145 465.7 173.5 18 21 1.9e-11 1.9e-08 34.4 1.2 1 24 616 639 616 639 0.98 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF700-202 - 724 6.7e-145 465.7 173.5 19 21 1.3e-08 1.3e-05 25.3 2.5 3 26 646 669 644 669 0.90 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF700-202 - 724 6.7e-145 465.7 173.5 20 21 1.2e-08 1.2e-05 25.5 1.0 2 25 673 696 673 697 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF700-202 - 724 6.7e-145 465.7 173.5 21 21 2.3e-09 2.3e-06 27.8 1.0 5 25 704 724 700 724 0.93 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZNF700-202 - 724 1.6e-75 245.6 175.3 1 20 1.3 1.3e+03 0.2 0.0 5 12 81 88 79 89 0.87 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF700-202 - 724 1.6e-75 245.6 175.3 2 20 4.6e-06 0.0046 17.3 2.0 1 23 176 198 176 198 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF700-202 - 724 1.6e-75 245.6 175.3 3 20 4.5e-05 0.044 14.2 3.7 1 23 204 226 204 226 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF700-202 - 724 1.6e-75 245.6 175.3 4 20 5.1e-08 5.1e-05 23.5 0.8 1 23 232 254 232 254 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF700-202 - 724 1.6e-75 245.6 175.3 5 20 4.8e-05 0.047 14.1 6.3 1 23 260 282 260 282 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF700-202 - 724 1.6e-75 245.6 175.3 6 20 1e-08 1e-05 25.7 1.1 1 23 288 310 288 310 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF700-202 - 724 1.6e-75 245.6 175.3 7 20 1.3e-06 0.0013 19.0 1.6 1 23 344 366 344 366 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF700-202 - 724 1.6e-75 245.6 175.3 8 20 3.1e-06 0.0031 17.9 1.8 1 23 372 394 372 394 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF700-202 - 724 1.6e-75 245.6 175.3 9 20 1.7e-07 0.00017 21.8 0.2 1 23 400 422 400 422 0.94 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF700-202 - 724 1.6e-75 245.6 175.3 10 20 9.8e-09 9.8e-06 25.8 1.9 1 23 428 450 428 450 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF700-202 - 724 1.6e-75 245.6 175.3 11 20 1.8e-06 0.0018 18.6 1.4 1 23 456 480 456 480 0.94 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF700-202 - 724 1.6e-75 245.6 175.3 12 20 1.5e-05 0.015 15.8 1.6 1 23 490 512 490 512 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF700-202 - 724 1.6e-75 245.6 175.3 13 20 0.001 1 10.0 5.9 1 23 518 540 518 540 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF700-202 - 724 1.6e-75 245.6 175.3 14 20 2.6e-08 2.6e-05 24.4 2.3 1 23 546 568 546 568 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF700-202 - 724 1.6e-75 245.6 175.3 15 20 7.9e-07 0.00079 19.8 2.2 1 23 574 596 574 596 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF700-202 - 724 1.6e-75 245.6 175.3 16 20 8.7e-09 8.6e-06 25.9 0.6 1 23 602 624 602 624 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF700-202 - 724 1.6e-75 245.6 175.3 17 20 3.5e-05 0.035 14.6 3.6 1 23 630 652 630 652 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF700-202 - 724 1.6e-75 245.6 175.3 18 20 0.00011 0.11 13.0 0.6 1 23 658 680 658 680 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF700-202 - 724 1.6e-75 245.6 175.3 19 20 4e-07 0.00039 20.7 1.7 1 23 686 708 686 708 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF700-202 - 724 1.6e-75 245.6 175.3 20 20 0.0022 2.2 8.9 0.7 1 11 714 724 714 724 0.94 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZNF700-202 - 724 1.2e-58 190.7 161.1 1 20 2.1 2.1e+03 0.1 0.0 4 12 80 88 80 92 0.81 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF700-202 - 724 1.2e-58 190.7 161.1 2 20 1.7e-05 0.017 15.9 1.7 1 23 176 198 176 199 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF700-202 - 724 1.2e-58 190.7 161.1 3 20 6.5e-05 0.065 14.1 3.1 1 23 204 226 204 227 0.97 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF700-202 - 724 1.2e-58 190.7 161.1 4 20 2e-06 0.0019 18.8 0.7 1 23 232 254 232 255 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF700-202 - 724 1.2e-58 190.7 161.1 5 20 0.00015 0.15 13.0 5.2 1 23 260 282 260 283 0.97 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF700-202 - 724 1.2e-58 190.7 161.1 6 20 9.2e-07 0.00091 19.9 1.0 1 23 288 310 288 311 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF700-202 - 724 1.2e-58 190.7 161.1 7 20 1.3e-06 0.0013 19.4 1.3 1 23 344 366 344 367 0.97 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF700-202 - 724 1.2e-58 190.7 161.1 8 20 3.9e-05 0.039 14.8 1.4 1 23 372 394 372 395 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF700-202 - 724 1.2e-58 190.7 161.1 9 20 3.5e-05 0.035 14.9 0.3 1 19 400 418 400 422 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF700-202 - 724 1.2e-58 190.7 161.1 10 20 8.9e-05 0.088 13.7 1.3 1 20 428 447 428 451 0.89 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF700-202 - 724 1.2e-58 190.7 161.1 11 20 7.7e-05 0.077 13.9 0.5 1 22 456 477 456 479 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF700-202 - 724 1.2e-58 190.7 161.1 12 20 5.2e-06 0.0052 17.5 1.4 1 23 490 512 490 513 0.97 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF700-202 - 724 1.2e-58 190.7 161.1 13 20 4.4e-06 0.0044 17.7 4.9 1 23 518 540 518 541 0.97 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF700-202 - 724 1.2e-58 190.7 161.1 14 20 2.9e-06 0.0029 18.3 1.8 1 23 546 568 546 569 0.97 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF700-202 - 724 1.2e-58 190.7 161.1 15 20 2.4e-05 0.024 15.4 2.0 1 21 574 594 574 597 0.89 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF700-202 - 724 1.2e-58 190.7 161.1 16 20 2.5e-06 0.0025 18.5 0.6 1 23 602 624 602 625 0.97 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF700-202 - 724 1.2e-58 190.7 161.1 17 20 0.0018 1.8 9.6 4.2 1 23 630 652 630 653 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF700-202 - 724 1.2e-58 190.7 161.1 18 20 2.3e-05 0.023 15.5 0.3 1 23 658 680 658 681 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF700-202 - 724 1.2e-58 190.7 161.1 19 20 7.7e-05 0.077 13.9 1.4 1 23 686 708 686 709 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF700-202 - 724 1.2e-58 190.7 161.1 20 20 0.098 97 4.2 0.4 1 11 714 724 714 724 0.92 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF700-202 - 724 9.3e-35 118.0 175.3 1 19 0.0043 4.2 7.5 0.8 2 11 176 185 176 185 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF700-202 - 724 9.3e-35 118.0 175.3 2 19 0.0061 6.1 7.0 3.4 2 14 204 216 203 217 0.92 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF700-202 - 724 9.3e-35 118.0 175.3 3 19 9.3e-05 0.093 12.8 0.8 2 13 232 243 232 256 0.80 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF700-202 - 724 9.3e-35 118.0 175.3 4 19 0.0084 8.4 6.5 4.9 2 25 260 283 260 285 0.79 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF700-202 - 724 9.3e-35 118.0 175.3 5 19 8.6e-06 0.0086 16.1 2.5 2 25 288 311 288 313 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF700-202 - 724 9.3e-35 118.0 175.3 6 19 0.00015 0.15 12.1 3.1 2 24 344 366 344 369 0.95 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF700-202 - 724 9.3e-35 118.0 175.3 7 19 0.001 1 9.4 0.7 1 12 371 382 371 382 0.91 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF700-202 - 724 9.3e-35 118.0 175.3 8 19 9.4e-05 0.093 12.8 0.4 2 17 400 415 400 422 0.83 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF700-202 - 724 9.3e-35 118.0 175.3 9 19 2.5e-05 0.025 14.6 2.0 2 24 428 450 428 453 0.92 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF700-202 - 724 9.3e-35 118.0 175.3 10 19 0.00012 0.12 12.4 1.2 2 18 456 472 456 480 0.83 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF700-202 - 724 9.3e-35 118.0 175.3 11 19 0.00047 0.47 10.5 2.8 2 24 490 512 490 515 0.95 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF700-202 - 724 9.3e-35 118.0 175.3 12 19 0.00048 0.48 10.5 5.3 2 24 518 540 518 543 0.95 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF700-202 - 724 9.3e-35 118.0 175.3 13 19 1.3e-06 0.0013 18.6 2.4 2 24 546 568 546 571 0.95 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF700-202 - 724 9.3e-35 118.0 175.3 14 19 8.1e-05 0.081 13.0 3.5 2 24 574 596 574 599 0.95 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF700-202 - 724 9.3e-35 118.0 175.3 15 19 3.3e-07 0.00033 20.6 1.1 2 24 602 624 602 627 0.95 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF700-202 - 724 9.3e-35 118.0 175.3 16 19 0.036 36 4.5 4.5 2 25 630 653 630 655 0.75 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF700-202 - 724 9.3e-35 118.0 175.3 17 19 0.0095 9.5 6.4 0.5 2 24 658 680 658 681 0.82 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF700-202 - 724 9.3e-35 118.0 175.3 18 19 7.8e-07 0.00078 19.4 3.5 1 26 685 710 685 711 0.95 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF700-202 - 724 9.3e-35 118.0 175.3 19 19 0.03 30 4.8 0.6 2 12 714 724 714 724 0.94 C2H2-type zinc finger zf-C2H2_jaz PF12171.8 27 ZNF700-202 - 724 7.9e-23 80.2 128.6 1 19 0.0052 5.2 7.5 0.1 2 21 176 195 175 196 0.86 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF700-202 - 724 7.9e-23 80.2 128.6 2 19 0.035 35 4.9 2.5 2 24 204 226 203 226 0.90 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF700-202 - 724 7.9e-23 80.2 128.6 3 19 0.0036 3.6 8.0 0.3 2 24 232 254 231 254 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF700-202 - 724 7.9e-23 80.2 128.6 4 19 0.00013 0.13 12.6 3.9 2 24 260 282 259 282 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF700-202 - 724 7.9e-23 80.2 128.6 5 19 0.013 13 6.2 0.2 4 24 290 310 287 313 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF700-202 - 724 7.9e-23 80.2 128.6 6 19 2.8e-07 0.00028 21.1 1.4 2 24 344 366 343 366 0.95 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF700-202 - 724 7.9e-23 80.2 128.6 7 19 0.019 19 5.7 0.8 2 22 372 392 371 392 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF700-202 - 724 7.9e-23 80.2 128.6 8 19 0.00028 0.28 11.5 0.1 2 20 400 418 399 418 0.95 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF700-202 - 724 7.9e-23 80.2 128.6 9 19 0.0046 4.6 7.7 0.1 2 20 428 446 427 450 0.90 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF700-202 - 724 7.9e-23 80.2 128.6 10 19 0.00044 0.44 10.9 1.1 2 26 456 480 455 481 0.96 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF700-202 - 724 7.9e-23 80.2 128.6 11 19 6.1e-07 0.00061 20.0 1.9 2 24 490 512 489 512 0.95 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF700-202 - 724 7.9e-23 80.2 128.6 12 19 8.1 8.1e+03 -2.7 3.2 2 23 518 539 517 540 0.81 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF700-202 - 724 7.9e-23 80.2 128.6 13 19 5.7e-05 0.057 13.7 0.3 2 24 546 568 545 568 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF700-202 - 724 7.9e-23 80.2 128.6 14 19 0.036 36 4.8 0.7 2 20 574 592 573 596 0.91 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF700-202 - 724 7.9e-23 80.2 128.6 15 19 8.4e-06 0.0083 16.4 0.2 2 24 602 624 601 624 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF700-202 - 724 7.9e-23 80.2 128.6 16 19 0.41 4.1e+02 1.4 4.0 2 22 630 650 629 653 0.79 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF700-202 - 724 7.9e-23 80.2 128.6 17 19 0.047 47 4.4 0.1 2 20 658 676 657 681 0.86 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF700-202 - 724 7.9e-23 80.2 128.6 18 19 0.14 1.4e+02 3.0 0.7 2 12 686 696 685 696 0.90 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF700-202 - 724 7.9e-23 80.2 128.6 19 19 0.61 6.1e+02 0.9 0.2 2 12 714 724 713 724 0.88 Zinc-finger double-stranded RNA-binding KRAB PF01352.27 42 ZNF700-202 - 724 1.2e-21 76.0 0.1 1 1 1.9e-24 1.9e-21 75.4 0.1 1 42 5 46 5 46 0.98 KRAB box Zn-ribbon_8 PF09723.10 40 ZNF700-202 - 724 7.1e-09 35.6 131.8 1 19 2.3 2.3e+03 -1.2 0.1 10 29 81 108 80 110 0.64 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF700-202 - 724 7.1e-09 35.6 131.8 2 19 0.048 48 4.2 0.1 6 16 176 186 173 199 0.82 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF700-202 - 724 7.1e-09 35.6 131.8 3 19 0.0011 1.1 9.4 6.1 6 34 204 239 203 242 0.80 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF700-202 - 724 7.1e-09 35.6 131.8 4 19 0.0033 3.2 7.9 5.4 6 33 232 266 231 268 0.78 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF700-202 - 724 7.1e-09 35.6 131.8 5 19 0.0045 4.5 7.5 6.6 6 34 260 295 258 299 0.75 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF700-202 - 724 7.1e-09 35.6 131.8 6 19 0.01 10 6.3 1.1 6 16 288 298 283 320 0.75 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF700-202 - 724 7.1e-09 35.6 131.8 7 19 0.036 36 4.6 0.3 6 21 344 359 343 367 0.75 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF700-202 - 724 7.1e-09 35.6 131.8 8 19 5.5e-05 0.054 13.6 4.4 6 36 372 409 371 412 0.74 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF700-202 - 724 7.1e-09 35.6 131.8 9 19 0.00054 0.54 10.4 5.5 6 36 400 437 399 440 0.85 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF700-202 - 724 7.1e-09 35.6 131.8 10 19 0.00052 0.51 10.5 6.2 6 36 428 465 426 469 0.82 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF700-202 - 724 7.1e-09 35.6 131.8 11 19 0.005 5 7.3 0.8 6 19 456 472 454 480 0.74 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF700-202 - 724 7.1e-09 35.6 131.8 12 19 0.16 1.6e+02 2.5 5.7 6 35 490 526 489 528 0.58 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF700-202 - 724 7.1e-09 35.6 131.8 13 19 0.013 13 6.0 8.8 6 36 518 555 516 557 0.79 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF700-202 - 724 7.1e-09 35.6 131.8 14 19 0.00032 0.32 11.2 5.4 6 34 546 581 545 584 0.84 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF700-202 - 724 7.1e-09 35.6 131.8 15 19 0.0017 1.7 8.8 7.0 6 36 574 611 573 613 0.82 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF700-202 - 724 7.1e-09 35.6 131.8 16 19 0.0034 3.4 7.9 6.4 6 34 602 637 601 639 0.80 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF700-202 - 724 7.1e-09 35.6 131.8 17 19 0.031 31 4.8 9.1 6 34 630 665 628 673 0.77 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF700-202 - 724 7.1e-09 35.6 131.8 18 19 0.01 10 6.3 0.2 6 17 658 672 657 680 0.78 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF700-202 - 724 7.1e-09 35.6 131.8 19 19 0.00025 0.25 11.5 5.6 6 34 686 721 685 724 0.71 Zinc ribbon domain # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF700-202.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF700-202.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF700-202.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF700-202.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF700-202.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:12:49 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZNF700-203 - 745 1.3e-144 464.8 173.6 1 21 0.3 3.3e+02 2.0 0.4 11 18 163 170 153 173 0.84 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF700-203 - 745 1.3e-144 464.8 173.6 2 21 2.1e-08 2.3e-05 24.6 0.5 7 24 189 206 188 207 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF700-203 - 745 1.3e-144 464.8 173.6 3 21 1.2e-07 0.00014 22.2 1.1 3 25 213 235 211 236 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF700-203 - 745 1.3e-144 464.8 173.6 4 21 1.1e-10 1.3e-07 31.8 1.7 5 25 243 263 241 264 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF700-203 - 745 1.3e-144 464.8 173.6 5 21 2.2e-11 2.5e-08 34.0 1.8 2 25 268 291 267 292 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF700-203 - 745 1.3e-144 464.8 173.6 6 21 1.9e-10 2.2e-07 31.0 3.0 4 25 298 319 295 320 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF700-203 - 745 1.3e-144 464.8 173.6 7 21 5.8e-08 6.4e-05 23.2 0.7 1 19 323 341 323 344 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF700-203 - 745 1.3e-144 464.8 173.6 8 21 2.9e-06 0.0032 17.8 0.2 2 24 352 374 351 376 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF700-203 - 745 1.3e-144 464.8 173.6 9 21 1.9e-09 2.1e-06 27.9 2.8 2 25 380 403 379 403 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF700-203 - 745 1.3e-144 464.8 173.6 10 21 4.8e-12 5.4e-09 36.1 1.6 2 25 408 431 407 432 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF700-203 - 745 1.3e-144 464.8 173.6 11 21 1.4e-09 1.5e-06 28.3 0.4 2 25 436 459 435 460 0.89 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF700-203 - 745 1.3e-144 464.8 173.6 12 21 1.7e-10 1.9e-07 31.2 1.1 1 25 463 487 463 488 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF700-203 - 745 1.3e-144 464.8 173.6 13 21 9.8e-06 0.011 16.1 1.3 10 24 496 520 487 522 0.70 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF700-203 - 745 1.3e-144 464.8 173.6 14 21 9.4e-10 1.1e-06 28.8 3.4 2 25 526 549 525 550 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF700-203 - 745 1.3e-144 464.8 173.6 15 21 8.5e-13 9.6e-10 38.5 1.6 1 25 553 577 553 578 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF700-203 - 745 1.3e-144 464.8 173.6 16 21 2.4e-11 2.7e-08 33.9 4.4 1 25 581 605 581 606 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF700-203 - 745 1.3e-144 464.8 173.6 17 21 2e-11 2.3e-08 34.1 1.4 1 25 609 633 609 634 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF700-203 - 745 1.3e-144 464.8 173.6 18 21 1.7e-11 1.9e-08 34.3 1.2 1 24 637 660 637 660 0.98 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF700-203 - 745 1.3e-144 464.8 173.6 19 21 1.2e-08 1.4e-05 25.3 2.5 3 26 667 690 665 690 0.90 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF700-203 - 745 1.3e-144 464.8 173.6 20 21 1.1e-08 1.3e-05 25.4 1.0 2 25 694 717 694 718 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF700-203 - 745 1.3e-144 464.8 173.6 21 21 2.1e-09 2.3e-06 27.7 1.0 5 25 725 745 721 745 0.93 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZNF700-203 - 745 2.9e-75 244.7 175.3 1 20 1.2 1.3e+03 0.1 0.0 5 12 102 109 100 110 0.87 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF700-203 - 745 2.9e-75 244.7 175.3 2 20 4.3e-06 0.0048 17.3 2.0 1 23 197 219 197 219 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF700-203 - 745 2.9e-75 244.7 175.3 3 20 4.1e-05 0.046 14.2 3.7 1 23 225 247 225 247 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF700-203 - 745 2.9e-75 244.7 175.3 4 20 4.7e-08 5.2e-05 23.5 0.8 1 23 253 275 253 275 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF700-203 - 745 2.9e-75 244.7 175.3 5 20 4.4e-05 0.049 14.1 6.3 1 23 281 303 281 303 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF700-203 - 745 2.9e-75 244.7 175.3 6 20 9.6e-09 1.1e-05 25.6 1.1 1 23 309 331 309 331 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF700-203 - 745 2.9e-75 244.7 175.3 7 20 1.2e-06 0.0014 19.0 1.6 1 23 365 387 365 387 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF700-203 - 745 2.9e-75 244.7 175.3 8 20 2.8e-06 0.0032 17.8 1.8 1 23 393 415 393 415 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF700-203 - 745 2.9e-75 244.7 175.3 9 20 1.6e-07 0.00018 21.8 0.2 1 23 421 443 421 443 0.94 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF700-203 - 745 2.9e-75 244.7 175.3 10 20 9e-09 1e-05 25.7 1.9 1 23 449 471 449 471 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF700-203 - 745 2.9e-75 244.7 175.3 11 20 1.7e-06 0.0019 18.6 1.4 1 23 477 501 477 501 0.94 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF700-203 - 745 2.9e-75 244.7 175.3 12 20 1.3e-05 0.015 15.7 1.6 1 23 511 533 511 533 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF700-203 - 745 2.9e-75 244.7 175.3 13 20 0.00092 1 9.9 5.9 1 23 539 561 539 561 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF700-203 - 745 2.9e-75 244.7 175.3 14 20 2.4e-08 2.7e-05 24.4 2.3 1 23 567 589 567 589 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF700-203 - 745 2.9e-75 244.7 175.3 15 20 7.3e-07 0.00082 19.7 2.2 1 23 595 617 595 617 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF700-203 - 745 2.9e-75 244.7 175.3 16 20 8e-09 8.9e-06 25.9 0.6 1 23 623 645 623 645 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF700-203 - 745 2.9e-75 244.7 175.3 17 20 3.2e-05 0.036 14.5 3.6 1 23 651 673 651 673 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF700-203 - 745 2.9e-75 244.7 175.3 18 20 0.0001 0.11 13.0 0.6 1 23 679 701 679 701 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF700-203 - 745 2.9e-75 244.7 175.3 19 20 3.6e-07 0.00041 20.7 1.7 1 23 707 729 707 729 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF700-203 - 745 2.9e-75 244.7 175.3 20 20 0.002 2.3 8.9 0.7 1 11 735 745 735 745 0.94 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZNF700-203 - 745 1.9e-58 190.0 161.1 1 20 1.9 2.2e+03 0.0 0.0 4 12 101 109 101 113 0.81 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF700-203 - 745 1.9e-58 190.0 161.1 2 20 1.6e-05 0.017 15.9 1.7 1 23 197 219 197 220 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF700-203 - 745 1.9e-58 190.0 161.1 3 20 6e-05 0.067 14.1 3.1 1 23 225 247 225 248 0.97 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF700-203 - 745 1.9e-58 190.0 161.1 4 20 1.8e-06 0.002 18.8 0.7 1 23 253 275 253 276 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF700-203 - 745 1.9e-58 190.0 161.1 5 20 0.00014 0.15 12.9 5.2 1 23 281 303 281 304 0.97 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF700-203 - 745 1.9e-58 190.0 161.1 6 20 8.4e-07 0.00094 19.8 1.0 1 23 309 331 309 332 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF700-203 - 745 1.9e-58 190.0 161.1 7 20 1.2e-06 0.0013 19.4 1.3 1 23 365 387 365 388 0.97 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF700-203 - 745 1.9e-58 190.0 161.1 8 20 3.6e-05 0.04 14.7 1.4 1 23 393 415 393 416 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF700-203 - 745 1.9e-58 190.0 161.1 9 20 3.3e-05 0.037 14.9 0.3 1 19 421 439 421 443 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF700-203 - 745 1.9e-58 190.0 161.1 10 20 8.2e-05 0.091 13.6 1.3 1 20 449 468 449 472 0.89 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF700-203 - 745 1.9e-58 190.0 161.1 11 20 7.1e-05 0.08 13.8 0.5 1 22 477 498 477 500 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF700-203 - 745 1.9e-58 190.0 161.1 12 20 4.8e-06 0.0054 17.5 1.4 1 23 511 533 511 534 0.97 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF700-203 - 745 1.9e-58 190.0 161.1 13 20 4.1e-06 0.0046 17.7 4.9 1 23 539 561 539 562 0.97 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF700-203 - 745 1.9e-58 190.0 161.1 14 20 2.7e-06 0.003 18.3 1.8 1 23 567 589 567 590 0.97 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF700-203 - 745 1.9e-58 190.0 161.1 15 20 2.2e-05 0.025 15.4 2.0 1 21 595 615 595 618 0.89 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF700-203 - 745 1.9e-58 190.0 161.1 16 20 2.3e-06 0.0026 18.5 0.6 1 23 623 645 623 646 0.97 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF700-203 - 745 1.9e-58 190.0 161.1 17 20 0.0016 1.8 9.6 4.2 1 23 651 673 651 674 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF700-203 - 745 1.9e-58 190.0 161.1 18 20 2.1e-05 0.024 15.5 0.3 1 23 679 701 679 702 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF700-203 - 745 1.9e-58 190.0 161.1 19 20 7.1e-05 0.079 13.8 1.4 1 23 707 729 707 730 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF700-203 - 745 1.9e-58 190.0 161.1 20 20 0.09 1e+02 4.2 0.4 1 11 735 745 735 745 0.92 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF700-203 - 745 1.6e-34 117.2 175.3 1 19 0.0039 4.4 7.4 0.8 2 11 197 206 197 206 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF700-203 - 745 1.6e-34 117.2 175.3 2 19 0.0056 6.3 6.9 3.4 2 14 225 237 224 238 0.92 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF700-203 - 745 1.6e-34 117.2 175.3 3 19 8.5e-05 0.096 12.7 0.8 2 13 253 264 253 277 0.80 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF700-203 - 745 1.6e-34 117.2 175.3 4 19 0.0077 8.7 6.5 4.9 2 25 281 304 281 306 0.79 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF700-203 - 745 1.6e-34 117.2 175.3 5 19 7.9e-06 0.0089 16.0 2.5 2 25 309 332 309 334 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF700-203 - 745 1.6e-34 117.2 175.3 6 19 0.00014 0.16 12.0 3.1 2 24 365 387 365 390 0.95 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF700-203 - 745 1.6e-34 117.2 175.3 7 19 0.00094 1.1 9.4 0.7 1 12 392 403 392 403 0.91 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF700-203 - 745 1.6e-34 117.2 175.3 8 19 8.6e-05 0.096 12.7 0.4 2 17 421 436 421 443 0.83 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF700-203 - 745 1.6e-34 117.2 175.3 9 19 2.3e-05 0.026 14.5 2.0 2 24 449 471 449 474 0.92 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF700-203 - 745 1.6e-34 117.2 175.3 10 19 0.00011 0.12 12.3 1.2 2 18 477 493 477 501 0.83 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF700-203 - 745 1.6e-34 117.2 175.3 11 19 0.00043 0.48 10.5 2.8 2 24 511 533 511 536 0.95 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF700-203 - 745 1.6e-34 117.2 175.3 12 19 0.00044 0.49 10.5 5.3 2 24 539 561 539 564 0.95 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF700-203 - 745 1.6e-34 117.2 175.3 13 19 1.2e-06 0.0014 18.6 2.4 2 24 567 589 567 592 0.95 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF700-203 - 745 1.6e-34 117.2 175.3 14 19 7.4e-05 0.083 12.9 3.5 2 24 595 617 595 620 0.95 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF700-203 - 745 1.6e-34 117.2 175.3 15 19 3e-07 0.00034 20.5 1.1 2 24 623 645 623 648 0.95 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF700-203 - 745 1.6e-34 117.2 175.3 16 19 0.033 37 4.4 4.5 2 25 651 674 651 676 0.75 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF700-203 - 745 1.6e-34 117.2 175.3 17 19 0.0087 9.8 6.3 0.5 2 24 679 701 679 702 0.82 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF700-203 - 745 1.6e-34 117.2 175.3 18 19 7.2e-07 0.0008 19.3 3.5 1 26 706 731 706 732 0.95 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF700-203 - 745 1.6e-34 117.2 175.3 19 19 0.028 31 4.7 0.6 2 12 735 745 735 745 0.94 C2H2-type zinc finger zf-C2H2_jaz PF12171.8 27 ZNF700-203 - 745 1.4e-22 79.4 128.6 1 19 0.0048 5.3 7.4 0.1 2 21 197 216 196 217 0.86 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF700-203 - 745 1.4e-22 79.4 128.6 2 19 0.032 36 4.8 2.5 2 24 225 247 224 247 0.90 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF700-203 - 745 1.4e-22 79.4 128.6 3 19 0.0033 3.7 7.9 0.3 2 24 253 275 252 275 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF700-203 - 745 1.4e-22 79.4 128.6 4 19 0.00012 0.13 12.6 3.9 2 24 281 303 280 303 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF700-203 - 745 1.4e-22 79.4 128.6 5 19 0.012 13 6.2 0.2 4 24 311 331 308 334 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF700-203 - 745 1.4e-22 79.4 128.6 6 19 2.6e-07 0.00029 21.1 1.4 2 24 365 387 364 387 0.95 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF700-203 - 745 1.4e-22 79.4 128.6 7 19 0.018 20 5.6 0.8 2 22 393 413 392 413 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF700-203 - 745 1.4e-22 79.4 128.6 8 19 0.00026 0.29 11.5 0.1 2 20 421 439 420 439 0.95 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF700-203 - 745 1.4e-22 79.4 128.6 9 19 0.0042 4.7 7.6 0.1 2 20 449 467 448 471 0.90 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF700-203 - 745 1.4e-22 79.4 128.6 10 19 0.0004 0.45 10.9 1.1 2 26 477 501 476 502 0.96 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF700-203 - 745 1.4e-22 79.4 128.6 11 19 5.6e-07 0.00063 20.0 1.9 2 24 511 533 510 533 0.95 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF700-203 - 745 1.4e-22 79.4 128.6 12 19 7.5 8.4e+03 -2.7 3.2 2 23 539 560 538 561 0.81 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF700-203 - 745 1.4e-22 79.4 128.6 13 19 5.2e-05 0.059 13.7 0.3 2 24 567 589 566 589 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF700-203 - 745 1.4e-22 79.4 128.6 14 19 0.033 37 4.7 0.7 2 20 595 613 594 617 0.91 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF700-203 - 745 1.4e-22 79.4 128.6 15 19 7.7e-06 0.0086 16.3 0.2 2 24 623 645 622 645 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF700-203 - 745 1.4e-22 79.4 128.6 16 19 0.38 4.3e+02 1.4 4.0 2 22 651 671 650 674 0.79 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF700-203 - 745 1.4e-22 79.4 128.6 17 19 0.043 49 4.4 0.1 2 20 679 697 678 702 0.86 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF700-203 - 745 1.4e-22 79.4 128.6 18 19 0.12 1.4e+02 2.9 0.7 2 12 707 717 706 717 0.90 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF700-203 - 745 1.4e-22 79.4 128.6 19 19 0.56 6.3e+02 0.8 0.2 2 12 735 745 734 745 0.88 Zinc-finger double-stranded RNA-binding KRAB PF01352.27 42 ZNF700-203 - 745 1.3e-21 76.0 0.1 1 1 1.7e-24 1.9e-21 75.4 0.1 1 42 26 67 26 67 0.98 KRAB box Zn-ribbon_8 PF09723.10 40 ZNF700-203 - 745 1.6e-08 34.5 132.3 1 19 2.1 2.3e+03 -1.2 0.1 10 29 102 129 101 131 0.64 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF700-203 - 745 1.6e-08 34.5 132.3 2 19 0.044 50 4.1 0.1 6 16 197 207 194 220 0.82 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF700-203 - 745 1.6e-08 34.5 132.3 3 19 0.00095 1.1 9.5 5.9 6 34 225 260 224 263 0.80 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF700-203 - 745 1.6e-08 34.5 132.3 4 19 0.0029 3.3 7.9 5.4 6 33 253 287 251 289 0.78 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF700-203 - 745 1.6e-08 34.5 132.3 5 19 0.004 4.5 7.5 6.5 6 34 281 316 279 319 0.74 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF700-203 - 745 1.6e-08 34.5 132.3 6 19 0.01 11 6.2 1.1 6 16 309 319 308 341 0.72 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF700-203 - 745 1.6e-08 34.5 132.3 7 19 0.033 37 4.5 0.3 6 21 365 380 364 388 0.75 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF700-203 - 745 1.6e-08 34.5 132.3 8 19 5.8e-05 0.065 13.4 4.6 6 36 393 430 392 433 0.74 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF700-203 - 745 1.6e-08 34.5 132.3 9 19 0.00054 0.61 10.3 5.6 6 36 421 458 420 461 0.85 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF700-203 - 745 1.6e-08 34.5 132.3 10 19 0.00048 0.54 10.4 6.2 6 36 449 486 447 490 0.82 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF700-203 - 745 1.6e-08 34.5 132.3 11 19 0.0047 5.2 7.3 0.9 6 19 477 493 475 501 0.74 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF700-203 - 745 1.6e-08 34.5 132.3 12 19 0.15 1.6e+02 2.5 5.7 6 35 511 547 510 549 0.58 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF700-203 - 745 1.6e-08 34.5 132.3 13 19 0.014 15 5.8 9.1 6 36 539 576 537 579 0.79 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF700-203 - 745 1.6e-08 34.5 132.3 14 19 0.00028 0.32 11.2 5.3 6 34 567 602 566 605 0.84 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF700-203 - 745 1.6e-08 34.5 132.3 15 19 0.0015 1.7 8.9 6.8 6 36 595 632 594 634 0.82 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF700-203 - 745 1.6e-08 34.5 132.3 16 19 0.0027 3 8.0 6.2 6 34 623 658 622 660 0.80 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF700-203 - 745 1.6e-08 34.5 132.3 17 19 0.026 29 4.9 9.0 6 34 651 686 649 694 0.77 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF700-203 - 745 1.6e-08 34.5 132.3 18 19 0.0094 11 6.3 0.3 6 17 679 693 678 701 0.78 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF700-203 - 745 1.6e-08 34.5 132.3 19 19 0.00023 0.26 11.4 5.6 6 34 707 742 706 745 0.71 Zinc ribbon domain # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF700-203.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF700-203.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF700-203.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF700-203.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF700-203.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:12:50 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZNF701-201 - 531 5.2e-58 191.0 83.1 1 11 6.3 4e+03 -1.5 0.2 3 15 190 202 190 203 0.85 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF701-201 - 531 5.2e-58 191.0 83.1 2 11 6.5 4.2e+03 -1.5 0.1 7 16 272 282 271 282 0.74 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF701-201 - 531 5.2e-58 191.0 83.1 3 11 1.1e-07 6.9e-05 23.1 0.6 2 24 296 318 296 320 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF701-201 - 531 5.2e-58 191.0 83.1 4 11 6e-07 0.00039 20.7 5.7 7 26 328 347 327 347 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF701-201 - 531 5.2e-58 191.0 83.1 5 11 6.4e-10 4.1e-07 30.1 0.2 2 25 351 374 350 375 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF701-201 - 531 5.2e-58 191.0 83.1 6 11 7.1e-12 4.5e-09 36.3 2.0 1 25 378 402 378 403 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF701-201 - 531 5.2e-58 191.0 83.1 7 11 2.6e-12 1.7e-09 37.7 3.3 1 25 406 430 406 431 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF701-201 - 531 5.2e-58 191.0 83.1 8 11 5.7e-10 3.7e-07 30.3 0.8 1 25 434 458 434 459 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF701-201 - 531 5.2e-58 191.0 83.1 9 11 8.2e-09 5.3e-06 26.6 1.2 2 26 463 487 462 487 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF701-201 - 531 5.2e-58 191.0 83.1 10 11 1.4e-09 8.7e-07 29.1 1.9 5 25 494 514 490 515 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF701-201 - 531 5.2e-58 191.0 83.1 11 11 0.013 8.1 7.1 2.4 1 13 518 530 518 531 0.94 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZNF701-201 - 531 6.6e-43 142.8 84.1 1 9 0.0053 3.4 8.3 0.0 7 23 287 303 287 303 0.95 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF701-201 - 531 6.6e-43 142.8 84.1 2 9 0.037 24 5.6 5.3 1 17 309 325 309 330 0.87 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF701-201 - 531 6.6e-43 142.8 84.1 3 9 5.6e-08 3.6e-05 24.0 0.7 1 23 336 358 336 358 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF701-201 - 531 6.6e-43 142.8 84.1 4 9 4e-10 2.5e-07 30.8 1.8 1 23 364 386 364 386 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF701-201 - 531 6.6e-43 142.8 84.1 5 9 5.3e-10 3.4e-07 30.4 3.2 1 23 392 414 392 414 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF701-201 - 531 6.6e-43 142.8 84.1 6 9 6.2e-07 0.0004 20.7 1.4 1 23 420 442 420 442 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF701-201 - 531 6.6e-43 142.8 84.1 7 9 2.3e-07 0.00015 22.1 0.4 1 23 448 470 448 470 0.95 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF701-201 - 531 6.6e-43 142.8 84.1 8 9 1.1e-06 0.00069 19.9 4.9 1 23 476 498 476 498 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF701-201 - 531 6.6e-43 142.8 84.1 9 9 3.7e-10 2.4e-07 30.9 3.1 1 23 504 526 504 526 0.99 Zinc finger, C2H2 type KRAB PF01352.27 42 ZNF701-201 - 531 2.7e-27 94.1 0.1 1 1 7.1e-30 4.5e-27 93.4 0.1 2 42 74 114 73 114 0.98 KRAB box zf-C2H2_4 PF13894.6 24 ZNF701-201 - 531 3.9e-20 70.8 71.0 1 9 2.3 1.4e+03 0.6 0.0 7 23 287 303 287 304 0.82 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF701-201 - 531 3.9e-20 70.8 71.0 2 9 0.076 48 5.2 6.4 1 19 309 327 309 330 0.91 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF701-201 - 531 3.9e-20 70.8 71.0 3 9 4.9e-05 0.031 15.1 0.6 1 23 336 358 336 359 0.91 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF701-201 - 531 3.9e-20 70.8 71.0 4 9 1.4e-05 0.0091 16.8 1.4 1 23 364 386 364 387 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF701-201 - 531 3.9e-20 70.8 71.0 5 9 3.1e-06 0.002 18.8 2.5 1 23 392 414 392 415 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF701-201 - 531 3.9e-20 70.8 71.0 6 9 0.00054 0.35 11.8 1.0 1 23 420 442 420 443 0.89 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF701-201 - 531 3.9e-20 70.8 71.0 7 9 0.0002 0.13 13.2 0.4 1 23 448 470 448 471 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF701-201 - 531 3.9e-20 70.8 71.0 8 9 0.0011 0.7 10.9 4.0 1 23 476 498 476 499 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF701-201 - 531 3.9e-20 70.8 71.0 9 9 7.7e-06 0.0049 17.6 2.1 1 23 504 526 504 527 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF701-201 - 531 2.1e-15 56.3 57.7 1 8 0.0022 1.4 9.0 0.7 2 12 309 319 308 320 0.92 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF701-201 - 531 2.1e-15 56.3 57.7 2 8 0.0005 0.32 11.0 0.7 2 24 336 358 336 361 0.83 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF701-201 - 531 2.1e-15 56.3 57.7 3 8 5e-05 0.032 14.2 1.3 2 22 364 384 364 388 0.87 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF701-201 - 531 2.1e-15 56.3 57.7 4 8 0.00087 0.56 10.3 1.4 2 24 392 414 392 417 0.86 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF701-201 - 531 2.1e-15 56.3 57.7 5 8 0.0016 1 9.5 0.7 2 12 420 430 420 431 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF701-201 - 531 2.1e-15 56.3 57.7 6 8 0.00012 0.078 13.0 0.5 2 21 448 467 448 470 0.89 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF701-201 - 531 2.1e-15 56.3 57.7 7 8 0.00055 0.35 10.9 2.7 1 13 475 487 475 500 0.76 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF701-201 - 531 2.1e-15 56.3 57.7 8 8 0.00011 0.073 13.1 1.6 2 22 504 524 504 528 0.86 C2H2-type zinc finger zf-C2H2_jaz PF12171.8 27 ZNF701-201 - 531 2.7e-09 37.1 45.7 1 9 3.7 2.3e+03 -1.0 0.0 9 21 288 300 287 300 0.83 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF701-201 - 531 2.7e-09 37.1 45.7 2 9 0.12 80 3.7 1.1 1 12 308 319 308 322 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF701-201 - 531 2.7e-09 37.1 45.7 3 9 0.0017 1.1 9.7 0.1 2 21 336 355 335 356 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF701-201 - 531 2.7e-09 37.1 45.7 4 9 0.021 14 6.1 0.3 2 20 364 382 363 382 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF701-201 - 531 2.7e-09 37.1 45.7 5 9 2.7e-05 0.017 15.4 0.3 2 21 392 411 391 412 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF701-201 - 531 2.7e-09 37.1 45.7 6 9 0.00017 0.11 12.8 0.4 2 20 420 438 419 439 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF701-201 - 531 2.7e-09 37.1 45.7 7 9 0.039 25 5.3 0.2 2 20 448 466 447 467 0.89 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF701-201 - 531 2.7e-09 37.1 45.7 8 9 0.2 1.3e+02 3.0 1.7 2 17 476 491 475 496 0.84 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF701-201 - 531 2.7e-09 37.1 45.7 9 9 0.0026 1.7 9.1 0.5 2 20 504 522 503 523 0.95 Zinc-finger double-stranded RNA-binding Zn-ribbon_8 PF09723.10 40 ZNF701-201 - 531 4e-09 36.4 47.1 1 7 0.11 73 3.6 11.1 5 34 308 343 308 345 0.86 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF701-201 - 531 4e-09 36.4 47.1 2 7 0.00033 0.21 11.7 4.2 6 34 336 371 335 371 0.85 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF701-201 - 531 4e-09 36.4 47.1 3 7 0.0017 1.1 9.5 0.5 6 17 364 375 362 385 0.84 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF701-201 - 531 4e-09 36.4 47.1 4 7 8.8e-05 0.056 13.6 3.6 6 38 392 431 391 433 0.89 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF701-201 - 531 4e-09 36.4 47.1 5 7 0.0003 0.19 11.8 4.7 6 34 448 483 447 483 0.93 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF701-201 - 531 4e-09 36.4 47.1 6 7 0.0019 1.2 9.3 0.9 6 17 476 487 475 499 0.84 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF701-201 - 531 4e-09 36.4 47.1 7 7 0.0017 1.1 9.4 0.2 6 17 504 515 503 524 0.85 Zinc ribbon domain zf-met PF12874.7 25 ZNF701-201 - 531 8.4e-09 35.5 52.8 1 8 0.67 4.3e+02 1.5 0.4 1 10 309 318 309 318 0.83 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF701-201 - 531 8.4e-09 35.5 52.8 2 8 0.0023 1.5 9.4 0.9 1 20 336 355 336 359 0.91 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF701-201 - 531 8.4e-09 35.5 52.8 3 8 0.019 12 6.4 1.5 1 19 364 382 364 386 0.93 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF701-201 - 531 8.4e-09 35.5 52.8 4 8 5.9e-05 0.038 14.4 0.7 1 20 392 411 392 415 0.91 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF701-201 - 531 8.4e-09 35.5 52.8 5 8 4.9e-05 0.031 14.7 0.6 1 20 420 439 420 442 0.94 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF701-201 - 531 8.4e-09 35.5 52.8 6 8 0.21 1.3e+02 3.1 0.8 1 19 448 466 448 470 0.91 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF701-201 - 531 8.4e-09 35.5 52.8 7 8 0.0035 2.2 8.8 2.4 1 19 476 494 476 496 0.94 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF701-201 - 531 8.4e-09 35.5 52.8 8 8 0.0016 1 9.9 0.3 1 19 504 522 504 522 0.96 Zinc-finger of C2H2 type # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF701-201.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF701-201.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF701-201.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF701-201.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF701-201.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:12:50 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZNF701-202 - 465 1e-58 193.2 83.1 1 11 5.6 3.5e+03 -1.2 0.2 3 15 124 136 124 137 0.85 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF701-202 - 465 1e-58 193.2 83.1 2 11 5.8 3.6e+03 -1.3 0.1 7 16 206 216 205 216 0.74 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF701-202 - 465 1e-58 193.2 83.1 3 11 9.5e-08 5.9e-05 23.3 0.6 2 24 230 252 230 254 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF701-202 - 465 1e-58 193.2 83.1 4 11 5.3e-07 0.00033 20.9 5.7 7 26 262 281 261 281 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF701-202 - 465 1e-58 193.2 83.1 5 11 5.7e-10 3.5e-07 30.3 0.2 2 25 285 308 284 309 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF701-202 - 465 1e-58 193.2 83.1 6 11 6.3e-12 3.9e-09 36.5 2.0 1 25 312 336 312 337 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF701-202 - 465 1e-58 193.2 83.1 7 11 2.3e-12 1.4e-09 37.9 3.3 1 25 340 364 340 365 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF701-202 - 465 1e-58 193.2 83.1 8 11 5.1e-10 3.1e-07 30.5 0.8 1 25 368 392 368 393 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF701-202 - 465 1e-58 193.2 83.1 9 11 7.3e-09 4.5e-06 26.8 1.2 2 26 397 421 396 421 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF701-202 - 465 1e-58 193.2 83.1 10 11 1.2e-09 7.4e-07 29.3 1.9 5 25 428 448 424 449 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF701-202 - 465 1e-58 193.2 83.1 11 11 0.011 6.9 7.3 2.4 1 13 452 464 452 465 0.94 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZNF701-202 - 465 1.1e-43 145.3 83.6 1 9 0.0047 2.9 8.5 0.0 7 23 221 237 221 237 0.95 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF701-202 - 465 1.1e-43 145.3 83.6 2 9 0.04 24 5.6 5.5 1 17 243 259 243 264 0.87 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF701-202 - 465 1.1e-43 145.3 83.6 3 9 4.9e-08 3e-05 24.2 0.7 1 23 270 292 270 292 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF701-202 - 465 1.1e-43 145.3 83.6 4 9 3.5e-10 2.2e-07 31.0 1.8 1 23 298 320 298 320 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF701-202 - 465 1.1e-43 145.3 83.6 5 9 4.7e-10 2.9e-07 30.6 3.2 1 23 326 348 326 348 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF701-202 - 465 1.1e-43 145.3 83.6 6 9 5.5e-07 0.00034 20.9 1.4 1 23 354 376 354 376 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF701-202 - 465 1.1e-43 145.3 83.6 7 9 2e-07 0.00013 22.3 0.4 1 23 382 404 382 404 0.95 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF701-202 - 465 1.1e-43 145.3 83.6 8 9 9.5e-07 0.00059 20.2 4.9 1 23 410 432 410 432 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF701-202 - 465 1.1e-43 145.3 83.6 9 9 3.2e-10 2e-07 31.1 3.1 1 23 438 460 438 460 0.99 Zinc finger, C2H2 type KRAB PF01352.27 42 ZNF701-202 - 465 2.3e-27 94.4 0.1 1 1 6.2e-30 3.8e-27 93.7 0.1 2 42 8 48 7 48 0.98 KRAB box zf-C2H2_4 PF13894.6 24 ZNF701-202 - 465 9.8e-21 72.7 71.0 1 9 2 1.2e+03 0.8 0.0 7 23 221 237 221 238 0.82 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF701-202 - 465 9.8e-21 72.7 71.0 2 9 0.067 41 5.4 6.4 1 19 243 261 243 264 0.91 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF701-202 - 465 9.8e-21 72.7 71.0 3 9 4.3e-05 0.026 15.3 0.6 1 23 270 292 270 293 0.91 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF701-202 - 465 9.8e-21 72.7 71.0 4 9 1.3e-05 0.0077 17.0 1.4 1 23 298 320 298 321 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF701-202 - 465 9.8e-21 72.7 71.0 5 9 2.8e-06 0.0017 19.0 2.5 1 23 326 348 326 349 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF701-202 - 465 9.8e-21 72.7 71.0 6 9 0.00048 0.3 12.1 1.0 1 23 354 376 354 377 0.89 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF701-202 - 465 9.8e-21 72.7 71.0 7 9 0.00018 0.11 13.4 0.4 1 23 382 404 382 405 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF701-202 - 465 9.8e-21 72.7 71.0 8 9 0.00096 0.59 11.1 4.0 1 23 410 432 410 433 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF701-202 - 465 9.8e-21 72.7 71.0 9 9 6.8e-06 0.0042 17.8 2.1 1 23 438 460 438 461 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF701-202 - 465 2.2e-15 56.2 59.6 1 8 0.0019 1.2 9.2 0.7 2 12 243 253 242 254 0.92 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF701-202 - 465 2.2e-15 56.2 59.6 2 8 0.00045 0.28 11.3 0.7 2 24 270 292 270 295 0.83 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF701-202 - 465 2.2e-15 56.2 59.6 3 8 4.5e-05 0.028 14.4 1.3 2 22 298 318 298 322 0.87 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF701-202 - 465 2.2e-15 56.2 59.6 4 8 0.00077 0.48 10.5 1.4 2 24 326 348 326 351 0.86 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF701-202 - 465 2.2e-15 56.2 59.6 5 8 0.0014 0.87 9.7 0.7 2 12 354 364 354 365 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF701-202 - 465 2.2e-15 56.2 59.6 6 8 0.00011 0.067 13.2 0.5 2 21 382 401 382 404 0.89 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF701-202 - 465 2.2e-15 56.2 59.6 7 8 0.0016 1 9.5 4.4 1 13 409 421 409 434 0.76 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF701-202 - 465 2.2e-15 56.2 59.6 8 8 0.0001 0.062 13.3 1.6 2 22 438 458 438 462 0.86 C2H2-type zinc finger zf-C2H2_jaz PF12171.8 27 ZNF701-202 - 465 7.2e-10 38.9 45.7 1 9 3.3 2e+03 -0.8 0.0 9 21 222 234 221 234 0.83 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF701-202 - 465 7.2e-10 38.9 45.7 2 9 0.11 69 3.9 1.1 1 12 242 253 242 256 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF701-202 - 465 7.2e-10 38.9 45.7 3 9 0.0015 0.91 9.9 0.1 2 21 270 289 269 290 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF701-202 - 465 7.2e-10 38.9 45.7 4 9 0.019 12 6.4 0.3 2 20 298 316 297 316 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF701-202 - 465 7.2e-10 38.9 45.7 5 9 2.4e-05 0.015 15.6 0.3 2 21 326 345 325 346 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF701-202 - 465 7.2e-10 38.9 45.7 6 9 0.00015 0.092 13.1 0.4 2 20 354 372 353 373 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF701-202 - 465 7.2e-10 38.9 45.7 7 9 0.035 21 5.5 0.2 2 20 382 400 381 401 0.89 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF701-202 - 465 7.2e-10 38.9 45.7 8 9 0.18 1.1e+02 3.2 1.7 2 17 410 425 409 430 0.84 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF701-202 - 465 7.2e-10 38.9 45.7 9 9 0.0023 1.4 9.3 0.5 2 20 438 456 437 457 0.95 Zinc-finger double-stranded RNA-binding Zn-ribbon_8 PF09723.10 40 ZNF701-202 - 465 1.9e-09 37.5 47.4 1 6 0.14 86 3.4 10.8 5 33 242 276 242 277 0.86 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF701-202 - 465 1.9e-09 37.5 47.4 2 6 0.00016 0.1 12.7 3.6 6 34 270 305 269 306 0.85 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF701-202 - 465 1.9e-09 37.5 47.4 3 6 0.0014 0.88 9.7 0.4 6 17 298 309 297 320 0.83 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF701-202 - 465 1.9e-09 37.5 47.4 4 6 7.7e-05 0.047 13.8 3.6 6 38 326 365 325 367 0.89 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF701-202 - 465 1.9e-09 37.5 47.4 5 6 0.00043 0.27 11.4 5.9 6 34 382 417 381 432 0.93 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF701-202 - 465 1.9e-09 37.5 47.4 6 6 0.0015 0.93 9.7 0.2 6 17 438 449 437 458 0.85 Zinc ribbon domain zf-met PF12874.7 25 ZNF701-202 - 465 1.7e-08 34.6 55.6 1 8 0.6 3.7e+02 1.7 0.4 1 10 243 252 243 252 0.83 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF701-202 - 465 1.7e-08 34.6 55.6 2 8 0.002 1.2 9.6 0.9 1 20 270 289 270 293 0.91 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF701-202 - 465 1.7e-08 34.6 55.6 3 8 0.017 10 6.7 1.5 1 19 298 316 298 320 0.93 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF701-202 - 465 1.7e-08 34.6 55.6 4 8 5.2e-05 0.032 14.6 0.7 1 20 326 345 326 349 0.91 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF701-202 - 465 1.7e-08 34.6 55.6 5 8 4.3e-05 0.027 14.9 0.6 1 20 354 373 354 376 0.94 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF701-202 - 465 1.7e-08 34.6 55.6 6 8 0.18 1.1e+02 3.4 0.8 1 19 382 400 382 404 0.91 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF701-202 - 465 1.7e-08 34.6 55.6 7 8 0.0031 1.9 9.0 2.4 1 19 410 428 410 430 0.94 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF701-202 - 465 1.7e-08 34.6 55.6 8 8 0.0014 0.85 10.1 0.3 1 19 438 456 438 456 0.96 Zinc-finger of C2H2 type # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF701-202.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF701-202.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF701-202.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF701-202.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF701-202.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:12:51 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF701-203.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF701-203.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF701-203.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF701-203.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF701-203.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:12:51 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZNF701-204 - 531 5.2e-58 191.0 83.1 1 11 6.3 4e+03 -1.5 0.2 3 15 190 202 190 203 0.85 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF701-204 - 531 5.2e-58 191.0 83.1 2 11 6.5 4.2e+03 -1.5 0.1 7 16 272 282 271 282 0.74 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF701-204 - 531 5.2e-58 191.0 83.1 3 11 1.1e-07 6.9e-05 23.1 0.6 2 24 296 318 296 320 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF701-204 - 531 5.2e-58 191.0 83.1 4 11 6e-07 0.00039 20.7 5.7 7 26 328 347 327 347 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF701-204 - 531 5.2e-58 191.0 83.1 5 11 6.4e-10 4.1e-07 30.1 0.2 2 25 351 374 350 375 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF701-204 - 531 5.2e-58 191.0 83.1 6 11 7.1e-12 4.5e-09 36.3 2.0 1 25 378 402 378 403 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF701-204 - 531 5.2e-58 191.0 83.1 7 11 2.6e-12 1.7e-09 37.7 3.3 1 25 406 430 406 431 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF701-204 - 531 5.2e-58 191.0 83.1 8 11 5.7e-10 3.7e-07 30.3 0.8 1 25 434 458 434 459 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF701-204 - 531 5.2e-58 191.0 83.1 9 11 8.2e-09 5.3e-06 26.6 1.2 2 26 463 487 462 487 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF701-204 - 531 5.2e-58 191.0 83.1 10 11 1.4e-09 8.7e-07 29.1 1.9 5 25 494 514 490 515 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF701-204 - 531 5.2e-58 191.0 83.1 11 11 0.013 8.1 7.1 2.4 1 13 518 530 518 531 0.94 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZNF701-204 - 531 6.6e-43 142.8 84.1 1 9 0.0053 3.4 8.3 0.0 7 23 287 303 287 303 0.95 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF701-204 - 531 6.6e-43 142.8 84.1 2 9 0.037 24 5.6 5.3 1 17 309 325 309 330 0.87 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF701-204 - 531 6.6e-43 142.8 84.1 3 9 5.6e-08 3.6e-05 24.0 0.7 1 23 336 358 336 358 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF701-204 - 531 6.6e-43 142.8 84.1 4 9 4e-10 2.5e-07 30.8 1.8 1 23 364 386 364 386 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF701-204 - 531 6.6e-43 142.8 84.1 5 9 5.3e-10 3.4e-07 30.4 3.2 1 23 392 414 392 414 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF701-204 - 531 6.6e-43 142.8 84.1 6 9 6.2e-07 0.0004 20.7 1.4 1 23 420 442 420 442 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF701-204 - 531 6.6e-43 142.8 84.1 7 9 2.3e-07 0.00015 22.1 0.4 1 23 448 470 448 470 0.95 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF701-204 - 531 6.6e-43 142.8 84.1 8 9 1.1e-06 0.00069 19.9 4.9 1 23 476 498 476 498 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF701-204 - 531 6.6e-43 142.8 84.1 9 9 3.7e-10 2.4e-07 30.9 3.1 1 23 504 526 504 526 0.99 Zinc finger, C2H2 type KRAB PF01352.27 42 ZNF701-204 - 531 2.7e-27 94.1 0.1 1 1 7.1e-30 4.5e-27 93.4 0.1 2 42 74 114 73 114 0.98 KRAB box zf-C2H2_4 PF13894.6 24 ZNF701-204 - 531 3.9e-20 70.8 71.0 1 9 2.3 1.4e+03 0.6 0.0 7 23 287 303 287 304 0.82 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF701-204 - 531 3.9e-20 70.8 71.0 2 9 0.076 48 5.2 6.4 1 19 309 327 309 330 0.91 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF701-204 - 531 3.9e-20 70.8 71.0 3 9 4.9e-05 0.031 15.1 0.6 1 23 336 358 336 359 0.91 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF701-204 - 531 3.9e-20 70.8 71.0 4 9 1.4e-05 0.0091 16.8 1.4 1 23 364 386 364 387 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF701-204 - 531 3.9e-20 70.8 71.0 5 9 3.1e-06 0.002 18.8 2.5 1 23 392 414 392 415 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF701-204 - 531 3.9e-20 70.8 71.0 6 9 0.00054 0.35 11.8 1.0 1 23 420 442 420 443 0.89 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF701-204 - 531 3.9e-20 70.8 71.0 7 9 0.0002 0.13 13.2 0.4 1 23 448 470 448 471 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF701-204 - 531 3.9e-20 70.8 71.0 8 9 0.0011 0.7 10.9 4.0 1 23 476 498 476 499 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF701-204 - 531 3.9e-20 70.8 71.0 9 9 7.7e-06 0.0049 17.6 2.1 1 23 504 526 504 527 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF701-204 - 531 2.1e-15 56.3 57.7 1 8 0.0022 1.4 9.0 0.7 2 12 309 319 308 320 0.92 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF701-204 - 531 2.1e-15 56.3 57.7 2 8 0.0005 0.32 11.0 0.7 2 24 336 358 336 361 0.83 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF701-204 - 531 2.1e-15 56.3 57.7 3 8 5e-05 0.032 14.2 1.3 2 22 364 384 364 388 0.87 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF701-204 - 531 2.1e-15 56.3 57.7 4 8 0.00087 0.56 10.3 1.4 2 24 392 414 392 417 0.86 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF701-204 - 531 2.1e-15 56.3 57.7 5 8 0.0016 1 9.5 0.7 2 12 420 430 420 431 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF701-204 - 531 2.1e-15 56.3 57.7 6 8 0.00012 0.078 13.0 0.5 2 21 448 467 448 470 0.89 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF701-204 - 531 2.1e-15 56.3 57.7 7 8 0.00055 0.35 10.9 2.7 1 13 475 487 475 500 0.76 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF701-204 - 531 2.1e-15 56.3 57.7 8 8 0.00011 0.073 13.1 1.6 2 22 504 524 504 528 0.86 C2H2-type zinc finger zf-C2H2_jaz PF12171.8 27 ZNF701-204 - 531 2.7e-09 37.1 45.7 1 9 3.7 2.3e+03 -1.0 0.0 9 21 288 300 287 300 0.83 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF701-204 - 531 2.7e-09 37.1 45.7 2 9 0.12 80 3.7 1.1 1 12 308 319 308 322 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF701-204 - 531 2.7e-09 37.1 45.7 3 9 0.0017 1.1 9.7 0.1 2 21 336 355 335 356 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF701-204 - 531 2.7e-09 37.1 45.7 4 9 0.021 14 6.1 0.3 2 20 364 382 363 382 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF701-204 - 531 2.7e-09 37.1 45.7 5 9 2.7e-05 0.017 15.4 0.3 2 21 392 411 391 412 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF701-204 - 531 2.7e-09 37.1 45.7 6 9 0.00017 0.11 12.8 0.4 2 20 420 438 419 439 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF701-204 - 531 2.7e-09 37.1 45.7 7 9 0.039 25 5.3 0.2 2 20 448 466 447 467 0.89 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF701-204 - 531 2.7e-09 37.1 45.7 8 9 0.2 1.3e+02 3.0 1.7 2 17 476 491 475 496 0.84 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF701-204 - 531 2.7e-09 37.1 45.7 9 9 0.0026 1.7 9.1 0.5 2 20 504 522 503 523 0.95 Zinc-finger double-stranded RNA-binding Zn-ribbon_8 PF09723.10 40 ZNF701-204 - 531 4e-09 36.4 47.1 1 7 0.11 73 3.6 11.1 5 34 308 343 308 345 0.86 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF701-204 - 531 4e-09 36.4 47.1 2 7 0.00033 0.21 11.7 4.2 6 34 336 371 335 371 0.85 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF701-204 - 531 4e-09 36.4 47.1 3 7 0.0017 1.1 9.5 0.5 6 17 364 375 362 385 0.84 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF701-204 - 531 4e-09 36.4 47.1 4 7 8.8e-05 0.056 13.6 3.6 6 38 392 431 391 433 0.89 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF701-204 - 531 4e-09 36.4 47.1 5 7 0.0003 0.19 11.8 4.7 6 34 448 483 447 483 0.93 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF701-204 - 531 4e-09 36.4 47.1 6 7 0.0019 1.2 9.3 0.9 6 17 476 487 475 499 0.84 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF701-204 - 531 4e-09 36.4 47.1 7 7 0.0017 1.1 9.4 0.2 6 17 504 515 503 524 0.85 Zinc ribbon domain zf-met PF12874.7 25 ZNF701-204 - 531 8.4e-09 35.5 52.8 1 8 0.67 4.3e+02 1.5 0.4 1 10 309 318 309 318 0.83 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF701-204 - 531 8.4e-09 35.5 52.8 2 8 0.0023 1.5 9.4 0.9 1 20 336 355 336 359 0.91 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF701-204 - 531 8.4e-09 35.5 52.8 3 8 0.019 12 6.4 1.5 1 19 364 382 364 386 0.93 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF701-204 - 531 8.4e-09 35.5 52.8 4 8 5.9e-05 0.038 14.4 0.7 1 20 392 411 392 415 0.91 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF701-204 - 531 8.4e-09 35.5 52.8 5 8 4.9e-05 0.031 14.7 0.6 1 20 420 439 420 442 0.94 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF701-204 - 531 8.4e-09 35.5 52.8 6 8 0.21 1.3e+02 3.1 0.8 1 19 448 466 448 470 0.91 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF701-204 - 531 8.4e-09 35.5 52.8 7 8 0.0035 2.2 8.8 2.4 1 19 476 494 476 496 0.94 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF701-204 - 531 8.4e-09 35.5 52.8 8 8 0.0016 1 9.9 0.3 1 19 504 522 504 522 0.96 Zinc-finger of C2H2 type # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF701-204.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF701-204.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF701-204.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF701-204.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF701-204.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:12:52 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF701-205.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF701-205.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF701-205.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF701-205.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF701-205.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:12:52 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF701-206.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF701-206.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF701-206.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF701-206.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF701-206.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:12:52 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZNF701-207 - 76 1.7e-11 44.0 15.0 1 3 1.3e-10 1.4e-07 31.7 0.7 7 26 17 36 8 36 0.89 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF701-207 - 76 1.7e-11 44.0 15.0 2 3 4.3e-07 0.00045 20.5 3.3 1 25 39 63 39 63 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF701-207 - 76 1.7e-11 44.0 15.0 3 3 4.9 5.2e+03 -1.8 0.1 3 9 69 75 68 75 0.74 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZNF701-207 - 76 2e-11 43.7 14.0 1 2 3.7e-09 3.9e-06 27.0 4.0 1 23 25 47 25 47 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF701-207 - 76 2e-11 43.7 14.0 2 2 1.2e-07 0.00012 22.3 2.4 2 23 54 75 53 75 0.96 Zinc finger, C2H2 type # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF701-207.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF701-207.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF701-207.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF701-207.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF701-207.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:12:53 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- nlz1 PF12402.8 58 ZNF703-201 - 590 6.3e-21 74.6 9.9 1 3 0.2 1.2e+03 -0.0 0.5 28 54 103 129 84 133 0.78 NocA-like zinc-finger protein 1 nlz1 PF12402.8 58 ZNF703-201 - 590 6.3e-21 74.6 9.9 2 3 3 1.8e+04 -6.6 3.3 43 55 174 186 166 187 0.63 NocA-like zinc-finger protein 1 nlz1 PF12402.8 58 ZNF703-201 - 590 6.3e-21 74.6 9.9 3 3 1.1e-24 6.3e-21 74.6 9.9 1 58 311 365 311 365 0.97 NocA-like zinc-finger protein 1 # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF703-201.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF703-201.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF703-201.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF703-201.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF703-201.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:12:53 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF704-201.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF704-201.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF704-201.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF704-201.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF704-201.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:12:54 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF704-202.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF704-202.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF704-202.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF704-202.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF704-202.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:12:54 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF704-203.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF704-203.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF704-203.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF704-203.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF704-203.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:12:54 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF704-204.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF704-204.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF704-204.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF704-204.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF704-204.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:12:55 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF704-205.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF704-205.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF704-205.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF704-205.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF704-205.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:12:55 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF704-206.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF704-206.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF704-206.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF704-206.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF704-206.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:12:55 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZNF705G-201 - 300 1.1e-29 101.5 44.9 1 7 0.57 2e+03 -0.5 0.7 12 17 113 118 86 129 0.71 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF705G-201 - 300 1.1e-29 101.5 44.9 2 7 0.00051 1.8 9.1 0.0 8 23 137 152 135 155 0.90 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF705G-201 - 300 1.1e-29 101.5 44.9 3 7 1e-06 0.0037 17.6 1.4 5 26 162 183 162 183 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF705G-201 - 300 1.1e-29 101.5 44.9 4 7 3.6e-11 1.3e-07 31.7 4.2 1 25 186 210 186 211 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF705G-201 - 300 1.1e-29 101.5 44.9 5 7 1.3e-09 4.7e-06 26.8 2.2 1 24 214 237 214 239 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF705G-201 - 300 1.1e-29 101.5 44.9 6 7 1.8e-07 0.00064 20.0 0.7 1 25 242 266 242 267 0.90 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF705G-201 - 300 1.1e-29 101.5 44.9 7 7 3.9e-08 0.00014 22.1 0.2 8 25 277 294 275 294 0.91 Zinc-finger double domain KRAB PF01352.27 42 ZNF705G-201 - 300 9.1e-23 79.6 0.1 1 1 4.4e-26 1.6e-22 78.9 0.1 2 42 7 47 6 47 0.98 KRAB box zf-C2H2 PF00096.26 23 ZNF705G-201 - 300 1.1e-07 31.9 59.6 1 8 3.7 1.3e+04 -3.0 0.6 17 23 86 93 84 93 0.82 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF705G-201 - 300 1.1e-07 31.9 59.6 2 8 0.11 4e+02 1.8 0.5 1 19 116 138 116 139 0.77 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF705G-201 - 300 1.1e-07 31.9 59.6 3 8 0.6 2.2e+03 -0.5 0.0 5 12 148 155 147 166 0.77 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF705G-201 - 300 1.1e-07 31.9 59.6 4 8 3e-06 0.011 16.2 6.9 1 23 172 194 172 194 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF705G-201 - 300 1.1e-07 31.9 59.6 5 8 6.4e-07 0.0023 18.3 8.3 1 23 200 222 200 222 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF705G-201 - 300 1.1e-07 31.9 59.6 6 8 2e-05 0.072 13.6 1.4 1 23 228 250 228 250 0.87 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF705G-201 - 300 1.1e-07 31.9 59.6 7 8 0.018 64 4.3 0.6 2 14 254 269 253 272 0.72 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF705G-201 - 300 1.1e-07 31.9 59.6 8 8 0.0006 2.2 8.9 0.1 2 17 285 300 284 300 0.90 Zinc finger, C2H2 type # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF705G-201.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF705G-201.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF705G-201.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF705G-201.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF705G-201.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:12:56 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZNF707-201 - 371 2.2e-34 116.4 54.7 1 7 1.3e-07 8.7e-05 22.8 0.2 2 24 191 213 190 214 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF707-201 - 371 2.2e-34 116.4 54.7 2 7 8.6e-11 5.9e-08 32.8 1.7 1 25 218 242 218 242 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF707-201 - 371 2.2e-34 116.4 54.7 3 7 2.9e-07 0.0002 21.6 1.3 2 26 247 271 246 271 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF707-201 - 371 2.2e-34 116.4 54.7 4 7 1.3e-09 9.3e-07 29.0 0.2 1 25 274 298 274 299 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF707-201 - 371 2.2e-34 116.4 54.7 5 7 3.2e-10 2.2e-07 31.0 1.2 1 24 302 325 302 326 0.97 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF707-201 - 371 2.2e-34 116.4 54.7 6 7 0.00014 0.097 13.1 3.3 3 26 332 355 330 355 0.90 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF707-201 - 371 2.2e-34 116.4 54.7 7 7 1.5 1e+03 0.4 1.9 3 10 360 367 359 370 0.81 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZNF707-201 - 371 6.4e-29 98.8 54.6 1 7 0.022 15 6.3 1.6 1 23 176 198 176 198 0.94 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF707-201 - 371 6.4e-29 98.8 54.6 2 7 1.7e-07 0.00012 22.4 0.3 1 23 204 226 204 226 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF707-201 - 371 6.4e-29 98.8 54.6 3 7 0.00052 0.36 11.4 0.9 1 23 232 254 232 254 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF707-201 - 371 6.4e-29 98.8 54.6 4 7 5.5e-10 3.8e-07 30.2 0.4 1 23 260 282 260 282 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF707-201 - 371 6.4e-29 98.8 54.6 5 7 5.4e-09 3.8e-06 27.1 1.8 1 23 288 310 288 310 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF707-201 - 371 6.4e-29 98.8 54.6 6 7 2.4e-05 0.017 15.6 0.4 1 23 316 338 316 338 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF707-201 - 371 6.4e-29 98.8 54.6 7 7 8.1e-07 0.00056 20.2 4.7 1 23 344 366 344 366 0.99 Zinc finger, C2H2 type KRAB PF01352.27 42 ZNF707-201 - 371 3.4e-23 81.0 0.0 1 1 8.9e-26 6.2e-23 80.2 0.0 1 42 7 48 7 48 0.98 KRAB box zf-C2H2_4 PF13894.6 24 ZNF707-201 - 371 7.8e-17 60.5 55.9 1 7 0.0029 2 9.5 1.7 1 23 176 198 176 199 0.91 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF707-201 - 371 7.8e-17 60.5 55.9 2 7 7.4e-06 0.0051 17.5 0.4 1 23 204 226 204 227 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF707-201 - 371 7.8e-17 60.5 55.9 3 7 7.5e-05 0.052 14.4 1.3 1 23 232 254 232 255 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF707-201 - 371 7.8e-17 60.5 55.9 4 7 1.3e-05 0.0089 16.8 0.4 1 23 260 282 260 283 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF707-201 - 371 7.8e-17 60.5 55.9 5 7 6.6e-06 0.0045 17.7 1.6 1 23 288 310 288 311 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF707-201 - 371 7.8e-17 60.5 55.9 6 7 0.0055 3.8 8.6 0.5 1 23 316 338 316 339 0.86 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF707-201 - 371 7.8e-17 60.5 55.9 7 7 0.00035 0.24 12.3 3.5 1 23 344 366 344 367 0.91 C2H2-type zinc finger # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF707-201.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF707-201.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF707-201.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF707-201.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF707-201.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:12:56 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZNF707-202 - 371 2.2e-34 116.4 54.7 1 7 1.3e-07 8.7e-05 22.8 0.2 2 24 191 213 190 214 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF707-202 - 371 2.2e-34 116.4 54.7 2 7 8.6e-11 5.9e-08 32.8 1.7 1 25 218 242 218 242 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF707-202 - 371 2.2e-34 116.4 54.7 3 7 2.9e-07 0.0002 21.6 1.3 2 26 247 271 246 271 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF707-202 - 371 2.2e-34 116.4 54.7 4 7 1.3e-09 9.3e-07 29.0 0.2 1 25 274 298 274 299 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF707-202 - 371 2.2e-34 116.4 54.7 5 7 3.2e-10 2.2e-07 31.0 1.2 1 24 302 325 302 326 0.97 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF707-202 - 371 2.2e-34 116.4 54.7 6 7 0.00014 0.097 13.1 3.3 3 26 332 355 330 355 0.90 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF707-202 - 371 2.2e-34 116.4 54.7 7 7 1.5 1e+03 0.4 1.9 3 10 360 367 359 370 0.81 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZNF707-202 - 371 6.4e-29 98.8 54.6 1 7 0.022 15 6.3 1.6 1 23 176 198 176 198 0.94 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF707-202 - 371 6.4e-29 98.8 54.6 2 7 1.7e-07 0.00012 22.4 0.3 1 23 204 226 204 226 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF707-202 - 371 6.4e-29 98.8 54.6 3 7 0.00052 0.36 11.4 0.9 1 23 232 254 232 254 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF707-202 - 371 6.4e-29 98.8 54.6 4 7 5.5e-10 3.8e-07 30.2 0.4 1 23 260 282 260 282 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF707-202 - 371 6.4e-29 98.8 54.6 5 7 5.4e-09 3.8e-06 27.1 1.8 1 23 288 310 288 310 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF707-202 - 371 6.4e-29 98.8 54.6 6 7 2.4e-05 0.017 15.6 0.4 1 23 316 338 316 338 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF707-202 - 371 6.4e-29 98.8 54.6 7 7 8.1e-07 0.00056 20.2 4.7 1 23 344 366 344 366 0.99 Zinc finger, C2H2 type KRAB PF01352.27 42 ZNF707-202 - 371 3.4e-23 81.0 0.0 1 1 8.9e-26 6.2e-23 80.2 0.0 1 42 7 48 7 48 0.98 KRAB box zf-C2H2_4 PF13894.6 24 ZNF707-202 - 371 7.8e-17 60.5 55.9 1 7 0.0029 2 9.5 1.7 1 23 176 198 176 199 0.91 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF707-202 - 371 7.8e-17 60.5 55.9 2 7 7.4e-06 0.0051 17.5 0.4 1 23 204 226 204 227 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF707-202 - 371 7.8e-17 60.5 55.9 3 7 7.5e-05 0.052 14.4 1.3 1 23 232 254 232 255 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF707-202 - 371 7.8e-17 60.5 55.9 4 7 1.3e-05 0.0089 16.8 0.4 1 23 260 282 260 283 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF707-202 - 371 7.8e-17 60.5 55.9 5 7 6.6e-06 0.0045 17.7 1.6 1 23 288 310 288 311 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF707-202 - 371 7.8e-17 60.5 55.9 6 7 0.0055 3.8 8.6 0.5 1 23 316 338 316 339 0.86 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF707-202 - 371 7.8e-17 60.5 55.9 7 7 0.00035 0.24 12.3 3.5 1 23 344 366 344 367 0.91 C2H2-type zinc finger # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF707-202.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF707-202.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF707-202.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF707-202.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF707-202.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:12:57 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- KRAB PF01352.27 42 ZNF707-203 - 55 1e-24 85.9 0.0 1 1 6.7e-29 1.2e-24 85.7 0.0 1 42 7 48 7 48 0.99 KRAB box # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF707-203.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF707-203.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF707-203.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF707-203.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF707-203.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:12:57 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF707-204.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF707-204.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF707-204.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF707-204.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF707-204.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:12:57 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- KRAB PF01352.27 42 ZNF707-205 - 55 1e-24 85.9 0.0 1 1 6.7e-29 1.2e-24 85.7 0.0 1 42 7 48 7 48 0.99 KRAB box # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF707-205.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF707-205.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF707-205.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF707-205.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF707-205.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:12:58 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- KRAB PF01352.27 42 ZNF707-206 - 105 4.7e-24 83.7 0.0 1 1 3.9e-28 6.9e-24 83.2 0.0 1 42 7 48 7 48 0.98 KRAB box # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF707-206.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF707-206.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF707-206.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF707-206.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF707-206.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:12:58 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF707-207.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF707-207.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF707-207.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF707-207.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF707-207.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:12:58 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- KRAB PF01352.27 42 ZNF707-208 - 103 4.4e-24 83.8 0.0 1 1 3.7e-28 6.6e-24 83.3 0.0 1 42 7 48 7 48 0.99 KRAB box # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF707-208.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF707-208.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF707-208.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF707-208.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF707-208.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:12:59 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF707-209.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF707-209.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF707-209.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF707-209.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF707-209.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:12:59 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF707-210.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF707-210.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF707-210.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF707-210.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF707-210.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:12:59 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- KRAB PF01352.27 42 ZNF707-211 - 55 1e-24 85.9 0.0 1 1 6.7e-29 1.2e-24 85.7 0.0 1 42 7 48 7 48 0.99 KRAB box # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF707-211.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF707-211.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF707-211.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF707-211.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF707-211.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:13:00 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZNF707-212 - 296 1.2e-33 114.0 59.9 1 7 1.1e-07 6.5e-05 23.2 0.2 2 24 116 138 115 139 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF707-212 - 296 1.2e-33 114.0 59.9 2 7 7.2e-11 4.4e-08 33.2 1.7 1 25 143 167 143 167 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF707-212 - 296 1.2e-33 114.0 59.9 3 7 2.4e-07 0.00015 22.0 1.3 2 26 172 196 171 196 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF707-212 - 296 1.2e-33 114.0 59.9 4 7 1.1e-09 6.9e-07 29.4 0.2 1 25 199 223 199 224 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF707-212 - 296 1.2e-33 114.0 59.9 5 7 2.6e-10 1.6e-07 31.4 1.2 1 24 227 250 227 251 0.97 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF707-212 - 296 1.2e-33 114.0 59.9 6 7 0.00012 0.073 13.5 3.3 3 26 257 280 255 280 0.90 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF707-212 - 296 1.2e-33 114.0 59.9 7 7 1.3 8e+02 0.8 1.9 3 10 285 292 284 295 0.81 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZNF707-212 - 296 2e-28 97.2 59.1 1 7 0.019 11 6.6 1.6 1 23 101 123 101 123 0.94 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF707-212 - 296 2e-28 97.2 59.1 2 7 1.4e-07 8.8e-05 22.8 0.3 1 23 129 151 129 151 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF707-212 - 296 2e-28 97.2 59.1 3 7 0.00044 0.27 11.8 0.9 1 23 157 179 157 179 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF707-212 - 296 2e-28 97.2 59.1 4 7 4.6e-10 2.9e-07 30.6 0.4 1 23 185 207 185 207 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF707-212 - 296 2e-28 97.2 59.1 5 7 4.6e-09 2.8e-06 27.5 1.8 1 23 213 235 213 235 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF707-212 - 296 2e-28 97.2 59.1 6 7 2e-05 0.013 16.0 0.4 1 23 241 263 241 263 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF707-212 - 296 2e-28 97.2 59.1 7 7 6.8e-07 0.00042 20.6 4.7 1 23 269 291 269 291 0.99 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZNF707-212 - 296 8.4e-18 63.5 55.6 1 7 0.0024 1.5 9.9 1.7 1 23 101 123 101 124 0.91 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF707-212 - 296 8.4e-18 63.5 55.6 2 7 6.1e-06 0.0038 17.9 0.4 1 23 129 151 129 152 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF707-212 - 296 8.4e-18 63.5 55.6 3 7 6.3e-05 0.039 14.8 1.3 1 23 157 179 157 180 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF707-212 - 296 8.4e-18 63.5 55.6 4 7 1.1e-05 0.0067 17.2 0.4 1 23 185 207 185 208 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF707-212 - 296 8.4e-18 63.5 55.6 5 7 5.5e-06 0.0034 18.1 1.6 1 23 213 235 213 236 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF707-212 - 296 8.4e-18 63.5 55.6 6 7 0.0046 2.9 9.0 0.5 1 23 241 263 241 264 0.86 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF707-212 - 296 8.4e-18 63.5 55.6 7 7 0.00029 0.18 12.7 3.5 1 23 269 291 269 292 0.91 C2H2-type zinc finger # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF707-212.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF707-212.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF707-212.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF707-212.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF707-212.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:13:00 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- KRAB PF01352.27 42 ZNF707-213 - 55 1e-24 85.9 0.0 1 1 6.7e-29 1.2e-24 85.7 0.0 1 42 7 48 7 48 0.99 KRAB box # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF707-213.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF707-213.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF707-213.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF707-213.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF707-213.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:13:01 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- KRAB PF01352.27 42 ZNF707-214 - 92 3.5e-24 84.2 0.0 1 1 2.8e-28 5.1e-24 83.7 0.0 1 42 7 48 7 48 0.99 KRAB box # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF707-214.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF707-214.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF707-214.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF707-214.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF707-214.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:13:01 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF707-215.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF707-215.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF707-215.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF707-215.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF707-215.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:13:01 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF707-216.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF707-216.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF707-216.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF707-216.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF707-216.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:13:02 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF707-217.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF707-217.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF707-217.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF707-217.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF707-217.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:13:02 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF707-218.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF707-218.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF707-218.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF707-218.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF707-218.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:13:02 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF707-219.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF707-219.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF707-219.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF707-219.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF707-219.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:13:03 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- KRAB PF01352.27 42 ZNF707-220 - 55 1e-24 85.9 0.0 1 1 6.7e-29 1.2e-24 85.7 0.0 1 42 7 48 7 48 0.99 KRAB box # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF707-220.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF707-220.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF707-220.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF707-220.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF707-220.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:13:03 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- KRAB PF01352.27 42 ZNF707-221 - 55 1e-24 85.9 0.0 1 1 6.7e-29 1.2e-24 85.7 0.0 1 42 7 48 7 48 0.99 KRAB box # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF707-221.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF707-221.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF707-221.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF707-221.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF707-221.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:13:03 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZNF707-222 - 371 2.2e-34 116.4 54.7 1 7 1.3e-07 8.7e-05 22.8 0.2 2 24 191 213 190 214 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF707-222 - 371 2.2e-34 116.4 54.7 2 7 8.6e-11 5.9e-08 32.8 1.7 1 25 218 242 218 242 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF707-222 - 371 2.2e-34 116.4 54.7 3 7 2.9e-07 0.0002 21.6 1.3 2 26 247 271 246 271 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF707-222 - 371 2.2e-34 116.4 54.7 4 7 1.3e-09 9.3e-07 29.0 0.2 1 25 274 298 274 299 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF707-222 - 371 2.2e-34 116.4 54.7 5 7 3.2e-10 2.2e-07 31.0 1.2 1 24 302 325 302 326 0.97 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF707-222 - 371 2.2e-34 116.4 54.7 6 7 0.00014 0.097 13.1 3.3 3 26 332 355 330 355 0.90 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF707-222 - 371 2.2e-34 116.4 54.7 7 7 1.5 1e+03 0.4 1.9 3 10 360 367 359 370 0.81 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZNF707-222 - 371 6.4e-29 98.8 54.6 1 7 0.022 15 6.3 1.6 1 23 176 198 176 198 0.94 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF707-222 - 371 6.4e-29 98.8 54.6 2 7 1.7e-07 0.00012 22.4 0.3 1 23 204 226 204 226 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF707-222 - 371 6.4e-29 98.8 54.6 3 7 0.00052 0.36 11.4 0.9 1 23 232 254 232 254 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF707-222 - 371 6.4e-29 98.8 54.6 4 7 5.5e-10 3.8e-07 30.2 0.4 1 23 260 282 260 282 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF707-222 - 371 6.4e-29 98.8 54.6 5 7 5.4e-09 3.8e-06 27.1 1.8 1 23 288 310 288 310 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF707-222 - 371 6.4e-29 98.8 54.6 6 7 2.4e-05 0.017 15.6 0.4 1 23 316 338 316 338 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF707-222 - 371 6.4e-29 98.8 54.6 7 7 8.1e-07 0.00056 20.2 4.7 1 23 344 366 344 366 0.99 Zinc finger, C2H2 type KRAB PF01352.27 42 ZNF707-222 - 371 3.4e-23 81.0 0.0 1 1 8.9e-26 6.2e-23 80.2 0.0 1 42 7 48 7 48 0.98 KRAB box zf-C2H2_4 PF13894.6 24 ZNF707-222 - 371 7.8e-17 60.5 55.9 1 7 0.0029 2 9.5 1.7 1 23 176 198 176 199 0.91 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF707-222 - 371 7.8e-17 60.5 55.9 2 7 7.4e-06 0.0051 17.5 0.4 1 23 204 226 204 227 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF707-222 - 371 7.8e-17 60.5 55.9 3 7 7.5e-05 0.052 14.4 1.3 1 23 232 254 232 255 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF707-222 - 371 7.8e-17 60.5 55.9 4 7 1.3e-05 0.0089 16.8 0.4 1 23 260 282 260 283 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF707-222 - 371 7.8e-17 60.5 55.9 5 7 6.6e-06 0.0045 17.7 1.6 1 23 288 310 288 311 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF707-222 - 371 7.8e-17 60.5 55.9 6 7 0.0055 3.8 8.6 0.5 1 23 316 338 316 339 0.86 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF707-222 - 371 7.8e-17 60.5 55.9 7 7 0.00035 0.24 12.3 3.5 1 23 344 366 344 367 0.91 C2H2-type zinc finger # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF707-222.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF707-222.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF707-222.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF707-222.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF707-222.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:13:04 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZNF707-223 - 371 2.2e-34 116.4 54.7 1 7 1.3e-07 8.7e-05 22.8 0.2 2 24 191 213 190 214 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF707-223 - 371 2.2e-34 116.4 54.7 2 7 8.6e-11 5.9e-08 32.8 1.7 1 25 218 242 218 242 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF707-223 - 371 2.2e-34 116.4 54.7 3 7 2.9e-07 0.0002 21.6 1.3 2 26 247 271 246 271 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF707-223 - 371 2.2e-34 116.4 54.7 4 7 1.3e-09 9.3e-07 29.0 0.2 1 25 274 298 274 299 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF707-223 - 371 2.2e-34 116.4 54.7 5 7 3.2e-10 2.2e-07 31.0 1.2 1 24 302 325 302 326 0.97 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF707-223 - 371 2.2e-34 116.4 54.7 6 7 0.00014 0.097 13.1 3.3 3 26 332 355 330 355 0.90 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF707-223 - 371 2.2e-34 116.4 54.7 7 7 1.5 1e+03 0.4 1.9 3 10 360 367 359 370 0.81 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZNF707-223 - 371 6.4e-29 98.8 54.6 1 7 0.022 15 6.3 1.6 1 23 176 198 176 198 0.94 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF707-223 - 371 6.4e-29 98.8 54.6 2 7 1.7e-07 0.00012 22.4 0.3 1 23 204 226 204 226 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF707-223 - 371 6.4e-29 98.8 54.6 3 7 0.00052 0.36 11.4 0.9 1 23 232 254 232 254 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF707-223 - 371 6.4e-29 98.8 54.6 4 7 5.5e-10 3.8e-07 30.2 0.4 1 23 260 282 260 282 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF707-223 - 371 6.4e-29 98.8 54.6 5 7 5.4e-09 3.8e-06 27.1 1.8 1 23 288 310 288 310 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF707-223 - 371 6.4e-29 98.8 54.6 6 7 2.4e-05 0.017 15.6 0.4 1 23 316 338 316 338 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF707-223 - 371 6.4e-29 98.8 54.6 7 7 8.1e-07 0.00056 20.2 4.7 1 23 344 366 344 366 0.99 Zinc finger, C2H2 type KRAB PF01352.27 42 ZNF707-223 - 371 3.4e-23 81.0 0.0 1 1 8.9e-26 6.2e-23 80.2 0.0 1 42 7 48 7 48 0.98 KRAB box zf-C2H2_4 PF13894.6 24 ZNF707-223 - 371 7.8e-17 60.5 55.9 1 7 0.0029 2 9.5 1.7 1 23 176 198 176 199 0.91 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF707-223 - 371 7.8e-17 60.5 55.9 2 7 7.4e-06 0.0051 17.5 0.4 1 23 204 226 204 227 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF707-223 - 371 7.8e-17 60.5 55.9 3 7 7.5e-05 0.052 14.4 1.3 1 23 232 254 232 255 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF707-223 - 371 7.8e-17 60.5 55.9 4 7 1.3e-05 0.0089 16.8 0.4 1 23 260 282 260 283 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF707-223 - 371 7.8e-17 60.5 55.9 5 7 6.6e-06 0.0045 17.7 1.6 1 23 288 310 288 311 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF707-223 - 371 7.8e-17 60.5 55.9 6 7 0.0055 3.8 8.6 0.5 1 23 316 338 316 339 0.86 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF707-223 - 371 7.8e-17 60.5 55.9 7 7 0.00035 0.24 12.3 3.5 1 23 344 366 344 367 0.91 C2H2-type zinc finger # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF707-223.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF707-223.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF707-223.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF707-223.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF707-223.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:13:04 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZNF707-224 - 298 1.3e-33 113.9 59.9 1 7 1.1e-07 6.6e-05 23.2 0.2 2 24 118 140 117 141 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF707-224 - 298 1.3e-33 113.9 59.9 2 7 7.2e-11 4.5e-08 33.2 1.7 1 25 145 169 145 169 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF707-224 - 298 1.3e-33 113.9 59.9 3 7 2.5e-07 0.00015 22.0 1.3 2 26 174 198 173 198 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF707-224 - 298 1.3e-33 113.9 59.9 4 7 1.1e-09 7e-07 29.4 0.2 1 25 201 225 201 226 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF707-224 - 298 1.3e-33 113.9 59.9 5 7 2.7e-10 1.6e-07 31.4 1.2 1 24 229 252 229 253 0.97 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF707-224 - 298 1.3e-33 113.9 59.9 6 7 0.00012 0.073 13.5 3.3 3 26 259 282 257 282 0.90 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF707-224 - 298 1.3e-33 113.9 59.9 7 7 1.3 8e+02 0.8 1.9 3 10 287 294 286 297 0.81 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZNF707-224 - 298 2.2e-28 97.1 59.1 1 7 0.019 12 6.6 1.6 1 23 103 125 103 125 0.94 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF707-224 - 298 2.2e-28 97.1 59.1 2 7 1.4e-07 8.9e-05 22.7 0.3 1 23 131 153 131 153 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF707-224 - 298 2.2e-28 97.1 59.1 3 7 0.00044 0.27 11.8 0.9 1 23 159 181 159 181 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF707-224 - 298 2.2e-28 97.1 59.1 4 7 4.7e-10 2.9e-07 30.6 0.4 1 23 187 209 187 209 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF707-224 - 298 2.2e-28 97.1 59.1 5 7 4.6e-09 2.8e-06 27.4 1.8 1 23 215 237 215 237 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF707-224 - 298 2.2e-28 97.1 59.1 6 7 2.1e-05 0.013 16.0 0.4 1 23 243 265 243 265 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF707-224 - 298 2.2e-28 97.1 59.1 7 7 6.9e-07 0.00042 20.6 4.7 1 23 271 293 271 293 0.99 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZNF707-224 - 298 9.3e-18 63.4 55.6 1 7 0.0024 1.5 9.9 1.7 1 23 103 125 103 126 0.91 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF707-224 - 298 9.3e-18 63.4 55.6 2 7 6.2e-06 0.0038 17.9 0.4 1 23 131 153 131 154 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF707-224 - 298 9.3e-18 63.4 55.6 3 7 6.3e-05 0.039 14.8 1.3 1 23 159 181 159 182 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF707-224 - 298 9.3e-18 63.4 55.6 4 7 1.1e-05 0.0067 17.2 0.4 1 23 187 209 187 210 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF707-224 - 298 9.3e-18 63.4 55.6 5 7 5.5e-06 0.0034 18.1 1.6 1 23 215 237 215 238 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF707-224 - 298 9.3e-18 63.4 55.6 6 7 0.0047 2.9 9.0 0.5 1 23 243 265 243 266 0.86 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF707-224 - 298 9.3e-18 63.4 55.6 7 7 0.00029 0.18 12.7 3.5 1 23 271 293 271 294 0.91 C2H2-type zinc finger # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF707-224.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF707-224.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF707-224.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF707-224.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF707-224.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:13:05 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF707-225.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF707-225.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF707-225.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF707-225.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF707-225.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:13:05 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF707-226.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF707-226.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF707-226.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF707-226.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF707-226.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:13:05 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- KRAB PF01352.27 42 ZNF707-227 - 55 1e-24 85.9 0.0 1 1 6.7e-29 1.2e-24 85.7 0.0 1 42 7 48 7 48 0.99 KRAB box # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF707-227.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF707-227.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF707-227.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF707-227.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF707-227.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:13:06 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF707-228.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF707-228.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF707-228.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF707-228.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF707-228.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:13:06 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- KRAB PF01352.27 42 ZNF707-229 - 105 4.7e-24 83.7 0.0 1 1 3.9e-28 6.9e-24 83.2 0.0 1 42 7 48 7 48 0.98 KRAB box # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF707-229.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF707-229.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF707-229.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF707-229.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF707-229.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:13:06 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZNF708-201 - 563 3.1e-119 384.6 131.1 1 16 3.1 1.8e+03 -0.4 0.3 10 24 135 149 120 151 0.74 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF708-201 - 563 3.1e-119 384.6 131.1 2 16 8.5e-09 4.9e-06 26.7 3.1 3 24 156 177 154 177 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF708-201 - 563 3.1e-119 384.6 131.1 3 16 2.9e-11 1.7e-08 34.5 0.6 2 26 183 207 182 207 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF708-201 - 563 3.1e-119 384.6 131.1 4 16 2.1e-11 1.2e-08 35.0 0.4 1 25 210 234 210 235 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF708-201 - 563 3.1e-119 384.6 131.1 5 16 1.8e-10 1e-07 32.0 0.6 2 25 239 262 238 263 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF708-201 - 563 3.1e-119 384.6 131.1 6 16 2.6e-12 1.5e-09 37.8 1.3 1 26 266 291 266 291 0.97 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF708-201 - 563 3.1e-119 384.6 131.1 7 16 7.7e-11 4.4e-08 33.2 1.0 1 25 294 318 294 318 0.97 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF708-201 - 563 3.1e-119 384.6 131.1 8 16 5.6e-11 3.3e-08 33.6 2.6 1 25 322 346 322 346 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF708-201 - 563 3.1e-119 384.6 131.1 9 16 8.1e-10 4.7e-07 30.0 1.5 2 25 351 374 350 375 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF708-201 - 563 3.1e-119 384.6 131.1 10 16 5.6e-10 3.2e-07 30.5 2.6 1 26 378 403 378 403 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF708-201 - 563 3.1e-119 384.6 131.1 11 16 7.3e-10 4.2e-07 30.1 1.6 2 25 407 430 406 430 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF708-201 - 563 3.1e-119 384.6 131.1 12 16 3.8e-08 2.2e-05 24.7 2.3 2 25 435 458 435 459 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF708-201 - 563 3.1e-119 384.6 131.1 13 16 1.7e-10 9.7e-08 32.1 1.7 1 24 462 485 462 486 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF708-201 - 563 3.1e-119 384.6 131.1 14 16 1.5e-10 8.5e-08 32.3 2.1 1 25 490 514 490 515 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF708-201 - 563 3.1e-119 384.6 131.1 15 16 2.5e-11 1.4e-08 34.7 0.6 2 25 519 542 518 543 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF708-201 - 563 3.1e-119 384.6 131.1 16 16 1e-06 0.00058 20.2 2.6 1 18 546 563 546 563 0.96 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZNF708-201 - 563 3.2e-79 257.2 107.5 1 15 0.43 2.5e+02 2.4 0.7 6 23 142 162 138 162 0.90 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF708-201 - 563 3.2e-79 257.2 107.5 2 15 9.9e-07 0.00057 20.2 1.8 1 23 168 190 168 190 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF708-201 - 563 3.2e-79 257.2 107.5 3 15 1.7e-08 9.6e-06 25.8 0.6 1 23 196 218 196 218 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF708-201 - 563 3.2e-79 257.2 107.5 4 15 2.7e-08 1.6e-05 25.1 0.5 1 23 224 246 224 246 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF708-201 - 563 3.2e-79 257.2 107.5 5 15 3.3e-09 1.9e-06 28.0 0.6 1 23 252 274 252 274 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF708-201 - 563 3.2e-79 257.2 107.5 6 15 3.2e-09 1.8e-06 28.1 0.9 1 23 280 302 280 302 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF708-201 - 563 3.2e-79 257.2 107.5 7 15 6.4e-08 3.7e-05 23.9 1.8 1 23 308 330 308 330 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF708-201 - 563 3.2e-79 257.2 107.5 8 15 8e-07 0.00046 20.5 0.5 1 23 336 358 336 358 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF708-201 - 563 3.2e-79 257.2 107.5 9 15 2.9e-08 1.7e-05 25.0 1.5 1 23 364 386 364 386 0.95 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF708-201 - 563 3.2e-79 257.2 107.5 10 15 7.5e-07 0.00043 20.6 0.8 1 23 392 414 392 414 0.95 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF708-201 - 563 3.2e-79 257.2 107.5 11 15 0.0003 0.17 12.4 0.3 1 23 420 442 420 442 0.90 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF708-201 - 563 3.2e-79 257.2 107.5 12 15 6.4e-08 3.7e-05 23.9 2.2 1 23 448 470 448 470 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF708-201 - 563 3.2e-79 257.2 107.5 13 15 4.1e-07 0.00024 21.4 1.2 1 23 476 498 476 498 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF708-201 - 563 3.2e-79 257.2 107.5 14 15 3e-08 1.7e-05 25.0 0.8 1 23 504 526 504 526 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF708-201 - 563 3.2e-79 257.2 107.5 15 15 1.1e-08 6.3e-06 26.4 0.5 1 23 532 554 532 554 0.99 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZNF708-201 - 563 4.7e-42 139.0 103.1 1 14 7.8e-05 0.045 14.6 2.0 1 23 168 190 168 191 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF708-201 - 563 4.7e-42 139.0 103.1 2 14 3.7e-05 0.021 15.6 0.5 1 23 196 218 196 219 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF708-201 - 563 4.7e-42 139.0 103.1 3 14 2e-05 0.012 16.4 0.4 1 23 224 246 224 247 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF708-201 - 563 4.7e-42 139.0 103.1 4 14 2.4e-05 0.014 16.2 0.5 1 23 252 274 252 275 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF708-201 - 563 4.7e-42 139.0 103.1 5 14 8.1e-06 0.0047 17.7 0.7 1 23 280 302 280 303 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF708-201 - 563 4.7e-42 139.0 103.1 6 14 0.0002 0.12 13.3 1.3 1 23 308 330 308 331 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF708-201 - 563 4.7e-42 139.0 103.1 7 14 0.00011 0.061 14.2 0.5 1 23 336 358 336 359 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF708-201 - 563 4.7e-42 139.0 103.1 8 14 3.9e-05 0.023 15.5 1.1 1 23 364 386 364 387 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF708-201 - 563 4.7e-42 139.0 103.1 9 14 0.00019 0.11 13.4 0.7 1 23 392 414 392 415 0.89 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF708-201 - 563 4.7e-42 139.0 103.1 10 14 0.0011 0.64 11.0 0.3 1 23 420 442 420 443 0.83 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF708-201 - 563 4.7e-42 139.0 103.1 11 14 1.5e-05 0.0085 16.9 1.3 1 23 448 470 448 471 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF708-201 - 563 4.7e-42 139.0 103.1 12 14 0.00023 0.14 13.1 1.0 1 23 476 498 476 499 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF708-201 - 563 4.7e-42 139.0 103.1 13 14 2.7e-05 0.016 16.0 0.6 1 23 504 526 504 527 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF708-201 - 563 4.7e-42 139.0 103.1 14 14 4e-05 0.023 15.5 0.5 1 23 532 554 532 555 0.94 C2H2-type zinc finger XPA_N PF01286.18 32 ZNF708-201 - 563 3.5e-26 90.9 63.0 1 14 0.018 10 6.3 1.2 3 12 169 178 167 186 0.81 XPA protein N-terminal XPA_N PF01286.18 32 ZNF708-201 - 563 3.5e-26 90.9 63.0 2 14 0.00067 0.39 10.8 0.2 3 14 197 208 195 215 0.85 XPA protein N-terminal XPA_N PF01286.18 32 ZNF708-201 - 563 3.5e-26 90.9 63.0 3 14 0.0009 0.52 10.4 0.1 3 14 225 236 223 241 0.90 XPA protein N-terminal XPA_N PF01286.18 32 ZNF708-201 - 563 3.5e-26 90.9 63.0 4 14 0.0022 1.3 9.2 0.2 3 14 253 264 252 270 0.89 XPA protein N-terminal XPA_N PF01286.18 32 ZNF708-201 - 563 3.5e-26 90.9 63.0 5 14 0.00045 0.26 11.4 0.2 3 14 281 292 279 299 0.85 XPA protein N-terminal XPA_N PF01286.18 32 ZNF708-201 - 563 3.5e-26 90.9 63.0 6 14 0.009 5.2 7.2 0.1 3 15 309 321 307 327 0.81 XPA protein N-terminal XPA_N PF01286.18 32 ZNF708-201 - 563 3.5e-26 90.9 63.0 7 14 0.0072 4.2 7.5 0.2 3 12 337 346 335 350 0.90 XPA protein N-terminal XPA_N PF01286.18 32 ZNF708-201 - 563 3.5e-26 90.9 63.0 8 14 0.0006 0.35 11.0 0.1 3 19 365 381 363 384 0.83 XPA protein N-terminal XPA_N PF01286.18 32 ZNF708-201 - 563 3.5e-26 90.9 63.0 9 14 0.001 0.58 10.3 0.2 3 14 393 404 391 408 0.91 XPA protein N-terminal XPA_N PF01286.18 32 ZNF708-201 - 563 3.5e-26 90.9 63.0 10 14 0.0069 4 7.6 0.1 3 12 421 430 419 436 0.91 XPA protein N-terminal XPA_N PF01286.18 32 ZNF708-201 - 563 3.5e-26 90.9 63.0 11 14 0.0021 1.2 9.2 0.3 3 14 449 460 447 467 0.84 XPA protein N-terminal XPA_N PF01286.18 32 ZNF708-201 - 563 3.5e-26 90.9 63.0 12 14 0.0023 1.3 9.1 0.2 3 15 477 489 475 495 0.80 XPA protein N-terminal XPA_N PF01286.18 32 ZNF708-201 - 563 3.5e-26 90.9 63.0 13 14 0.0013 0.78 9.8 0.2 3 14 505 516 503 522 0.84 XPA protein N-terminal XPA_N PF01286.18 32 ZNF708-201 - 563 3.5e-26 90.9 63.0 14 14 0.0011 0.65 10.1 0.1 3 14 533 544 531 548 0.92 XPA protein N-terminal KRAB PF01352.27 42 ZNF708-201 - 563 3.4e-23 81.0 0.4 1 1 9.9e-26 5.7e-23 80.3 0.4 1 42 3 44 3 44 0.98 KRAB box zf-C2H2_6 PF13912.6 27 ZNF708-201 - 563 4.8e-21 74.3 119.1 1 14 0.00042 0.24 11.4 2.2 2 20 168 186 168 191 0.86 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF708-201 - 563 4.8e-21 74.3 119.1 2 14 9.3e-05 0.054 13.5 0.9 2 24 196 218 196 221 0.92 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF708-201 - 563 4.8e-21 74.3 119.1 3 14 0.0047 2.7 8.1 0.5 2 21 224 243 224 248 0.78 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF708-201 - 563 4.8e-21 74.3 119.1 4 14 8.1e-06 0.0047 16.9 0.7 2 24 252 274 251 277 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF708-201 - 563 4.8e-21 74.3 119.1 5 14 0.00021 0.12 12.4 1.8 2 24 280 302 280 305 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF708-201 - 563 4.8e-21 74.3 119.1 6 14 0.014 8 6.6 1.9 2 24 308 330 308 333 0.89 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF708-201 - 563 4.8e-21 74.3 119.1 7 14 0.00022 0.13 12.3 0.7 2 24 336 358 336 361 0.91 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF708-201 - 563 4.8e-21 74.3 119.1 8 14 0.0043 2.5 8.2 1.3 2 21 364 383 364 386 0.83 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF708-201 - 563 4.8e-21 74.3 119.1 9 14 0.01 6 7.0 1.1 2 13 392 403 392 414 0.81 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF708-201 - 563 4.8e-21 74.3 119.1 10 14 0.0026 1.5 8.9 0.5 2 21 420 439 420 442 0.86 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF708-201 - 563 4.8e-21 74.3 119.1 11 14 0.00034 0.2 11.7 2.2 2 24 448 470 448 473 0.91 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF708-201 - 563 4.8e-21 74.3 119.1 12 14 0.055 32 4.7 4.3 2 11 476 485 476 499 0.82 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF708-201 - 563 4.8e-21 74.3 119.1 13 14 7e-05 0.041 13.9 1.0 2 24 504 526 504 529 0.91 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF708-201 - 563 4.8e-21 74.3 119.1 14 14 4.6e-05 0.026 14.5 1.0 2 26 532 556 532 557 0.93 C2H2-type zinc finger zf_UBZ PF18439.1 32 ZNF708-201 - 563 6.3e-20 70.5 65.2 1 15 0.16 93 2.7 0.0 24 30 80 86 80 88 0.89 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF708-201 - 563 6.3e-20 70.5 65.2 2 15 0.0069 4 7.1 1.0 3 21 168 187 166 187 0.87 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF708-201 - 563 6.3e-20 70.5 65.2 3 15 0.0029 1.7 8.3 0.2 3 20 196 214 194 215 0.80 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF708-201 - 563 6.3e-20 70.5 65.2 4 15 0.004 2.3 7.9 0.2 3 16 224 238 222 243 0.79 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF708-201 - 563 6.3e-20 70.5 65.2 5 15 0.0047 2.7 7.6 0.1 3 16 252 266 250 271 0.76 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF708-201 - 563 6.3e-20 70.5 65.2 6 15 0.0024 1.4 8.6 0.2 3 20 280 298 278 299 0.81 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF708-201 - 563 6.3e-20 70.5 65.2 7 15 0.02 12 5.6 0.1 3 20 308 326 306 327 0.79 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF708-201 - 563 6.3e-20 70.5 65.2 8 15 0.0019 1.1 8.9 0.1 3 18 336 352 334 355 0.79 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF708-201 - 563 6.3e-20 70.5 65.2 9 15 0.0066 3.8 7.2 0.2 3 15 364 376 362 383 0.80 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF708-201 - 563 6.3e-20 70.5 65.2 10 15 0.0066 3.8 7.2 0.1 3 15 392 404 390 411 0.81 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF708-201 - 563 6.3e-20 70.5 65.2 11 15 0.0028 1.6 8.4 0.1 3 15 420 432 418 439 0.83 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF708-201 - 563 6.3e-20 70.5 65.2 12 15 0.0052 3 7.5 0.2 3 13 448 458 446 467 0.81 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF708-201 - 563 6.3e-20 70.5 65.2 13 15 0.0015 0.86 9.3 0.3 3 20 476 494 474 495 0.80 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF708-201 - 563 6.3e-20 70.5 65.2 14 15 0.0083 4.8 6.9 0.1 3 18 504 520 502 523 0.79 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF708-201 - 563 6.3e-20 70.5 65.2 15 15 0.0037 2.1 8.0 0.2 3 20 532 550 530 551 0.81 Ubiquitin-Binding Zinc Finger zf-C2H2_jaz PF12171.8 27 ZNF708-201 - 563 9.3e-20 70.4 76.2 1 15 7.3 4.2e+03 -1.8 0.1 6 12 141 147 140 147 0.79 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF708-201 - 563 9.3e-20 70.4 76.2 2 15 0.019 11 6.5 0.7 2 21 168 187 167 188 0.88 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF708-201 - 563 9.3e-20 70.4 76.2 3 15 3.5e-05 0.02 15.2 0.3 2 21 196 215 195 216 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF708-201 - 563 9.3e-20 70.4 76.2 4 15 0.0022 1.3 9.4 0.1 2 21 224 243 223 244 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF708-201 - 563 9.3e-20 70.4 76.2 5 15 0.00044 0.26 11.6 0.3 2 21 252 271 251 272 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF708-201 - 563 9.3e-20 70.4 76.2 6 15 0.0002 0.11 12.8 0.6 2 22 280 300 279 300 0.95 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF708-201 - 563 9.3e-20 70.4 76.2 7 15 0.73 4.2e+02 1.4 0.1 2 21 308 327 307 328 0.79 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF708-201 - 563 9.3e-20 70.4 76.2 8 15 0.17 96 3.4 0.2 2 12 336 346 335 355 0.86 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF708-201 - 563 9.3e-20 70.4 76.2 9 15 0.00027 0.15 12.4 0.3 2 21 364 383 363 384 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF708-201 - 563 9.3e-20 70.4 76.2 10 15 0.0037 2.1 8.7 0.2 2 20 392 410 391 411 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF708-201 - 563 9.3e-20 70.4 76.2 11 15 0.21 1.2e+02 3.1 0.2 2 12 420 430 419 430 0.88 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF708-201 - 563 9.3e-20 70.4 76.2 12 15 0.00019 0.11 12.8 1.4 2 22 448 468 447 468 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF708-201 - 563 9.3e-20 70.4 76.2 13 15 0.012 7 7.1 0.2 2 20 476 494 475 495 0.85 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF708-201 - 563 9.3e-20 70.4 76.2 14 15 0.0016 0.92 9.9 0.3 2 21 504 523 503 524 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF708-201 - 563 9.3e-20 70.4 76.2 15 15 0.044 25 5.3 0.2 2 20 532 550 531 552 0.79 Zinc-finger double-stranded RNA-binding zf-C2H2_11 PF16622.5 29 ZNF708-201 - 563 4.8e-18 64.6 45.6 1 14 0.094 54 3.7 1.0 5 24 168 187 165 190 0.75 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF708-201 - 563 4.8e-18 64.6 45.6 2 14 0.089 52 3.7 0.0 5 26 196 217 193 218 0.78 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF708-201 - 563 4.8e-18 64.6 45.6 3 14 0.00099 0.57 10.0 0.0 5 26 224 245 221 246 0.91 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF708-201 - 563 4.8e-18 64.6 45.6 4 14 0.016 9.1 6.1 0.1 5 28 252 274 251 274 0.88 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF708-201 - 563 4.8e-18 64.6 45.6 5 14 0.13 76 3.2 0.1 5 23 280 298 277 302 0.75 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF708-201 - 563 4.8e-18 64.6 45.6 6 14 0.006 3.5 7.5 0.2 5 26 308 329 305 330 0.90 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF708-201 - 563 4.8e-18 64.6 45.6 7 14 0.0015 0.87 9.4 0.0 5 26 336 357 333 358 0.91 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF708-201 - 563 4.8e-18 64.6 45.6 8 14 0.093 54 3.7 0.0 5 23 364 382 360 386 0.75 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF708-201 - 563 4.8e-18 64.6 45.6 9 14 0.0057 3.3 7.6 0.0 5 26 392 413 389 414 0.86 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF708-201 - 563 4.8e-18 64.6 45.6 10 14 0.0016 0.9 9.3 0.1 5 26 420 441 418 442 0.91 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF708-201 - 563 4.8e-18 64.6 45.6 11 14 0.19 1.1e+02 2.7 0.1 5 14 448 457 445 464 0.75 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF708-201 - 563 4.8e-18 64.6 45.6 12 14 0.15 86 3.0 0.2 5 21 476 492 473 498 0.72 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF708-201 - 563 4.8e-18 64.6 45.6 13 14 0.0058 3.4 7.5 0.1 5 26 504 525 501 526 0.90 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF708-201 - 563 4.8e-18 64.6 45.6 14 14 0.0016 0.94 9.3 0.0 5 26 532 553 529 556 0.93 zinc-finger C2H2-type Zn-ribbon_8 PF09723.10 40 ZNF708-201 - 563 1.6e-16 60.1 90.8 1 14 0.014 8.2 6.6 8.4 6 38 168 207 167 208 0.72 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF708-201 - 563 1.6e-16 60.1 90.8 2 14 0.002 1.1 9.4 6.6 6 34 196 231 194 231 0.83 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF708-201 - 563 1.6e-16 60.1 90.8 3 14 0.00027 0.15 12.2 6.0 6 38 224 263 222 264 0.83 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF708-201 - 563 1.6e-16 60.1 90.8 4 14 0.00055 0.32 11.2 6.5 6 36 252 289 251 291 0.77 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF708-201 - 563 1.6e-16 60.1 90.8 5 14 0.0014 0.81 9.9 5.9 6 34 280 315 279 318 0.84 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF708-201 - 563 1.6e-16 60.1 90.8 6 14 0.011 6.3 7.0 0.3 6 17 308 319 307 330 0.84 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF708-201 - 563 1.6e-16 60.1 90.8 7 14 4.7e-05 0.027 14.6 5.5 6 38 336 375 335 376 0.72 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF708-201 - 563 1.6e-16 60.1 90.8 8 14 0.00031 0.18 11.9 6.5 6 38 364 403 363 404 0.78 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF708-201 - 563 1.6e-16 60.1 90.8 9 14 0.0032 1.8 8.7 0.6 6 18 392 404 391 414 0.86 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF708-201 - 563 1.6e-16 60.1 90.8 10 14 0.00028 0.16 12.1 5.5 6 34 420 455 419 456 0.76 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF708-201 - 563 1.6e-16 60.1 90.8 11 14 0.0008 0.46 10.6 7.8 6 34 448 483 446 485 0.87 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF708-201 - 563 1.6e-16 60.1 90.8 12 14 0.0011 0.65 10.2 6.0 6 35 476 512 475 516 0.85 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF708-201 - 563 1.6e-16 60.1 90.8 13 14 0.00048 0.28 11.3 5.3 6 34 504 539 502 540 0.79 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF708-201 - 563 1.6e-16 60.1 90.8 14 14 0.0042 2.4 8.3 1.5 6 18 532 550 529 563 0.69 Zinc ribbon domain zf-trcl PF13451.6 48 ZNF708-201 - 563 1.2e-10 41.1 61.3 1 13 0.036 21 5.1 0.6 4 15 167 178 165 187 0.88 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF708-201 - 563 1.2e-10 41.1 61.3 2 13 0.048 28 4.7 0.1 3 14 194 205 189 210 0.81 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF708-201 - 563 1.2e-10 41.1 61.3 3 13 0.048 28 4.7 0.1 3 14 222 233 220 237 0.85 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF708-201 - 563 1.2e-10 41.1 61.3 4 13 0.27 1.5e+02 2.3 4.9 5 46 252 292 249 294 0.60 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF708-201 - 563 1.2e-10 41.1 61.3 5 13 0.051 30 4.6 0.0 3 15 306 318 304 322 0.86 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF708-201 - 563 1.2e-10 41.1 61.3 6 13 0.025 15 5.6 0.1 3 14 334 345 332 353 0.82 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF708-201 - 563 1.2e-10 41.1 61.3 7 13 0.033 19 5.3 0.1 2 14 361 373 359 377 0.86 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF708-201 - 563 1.2e-10 41.1 61.3 8 13 0.022 13 5.8 0.1 3 15 390 402 388 408 0.89 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF708-201 - 563 1.2e-10 41.1 61.3 9 13 0.044 26 4.8 0.1 3 14 418 429 415 434 0.84 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF708-201 - 563 1.2e-10 41.1 61.3 10 13 7.6e-05 0.044 13.7 3.3 1 39 444 481 444 481 0.90 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF708-201 - 563 1.2e-10 41.1 61.3 11 13 0.0062 3.6 7.6 0.1 3 16 474 487 472 490 0.87 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF708-201 - 563 1.2e-10 41.1 61.3 12 13 0.021 12 5.9 0.1 3 14 502 513 500 517 0.86 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF708-201 - 563 1.2e-10 41.1 61.3 13 13 0.052 30 4.6 0.1 3 14 530 541 528 544 0.86 Probable zinc-ribbon domain C1_4 PF07975.12 55 ZNF708-201 - 563 1.6e-07 31.5 72.0 1 12 6.2 3.6e+03 -1.7 0.1 26 43 129 146 109 151 0.60 TFIIH C1-like domain C1_4 PF07975.12 55 ZNF708-201 - 563 1.6e-07 31.5 72.0 2 12 0.00024 0.14 12.4 2.8 15 49 155 191 138 193 0.74 TFIIH C1-like domain C1_4 PF07975.12 55 ZNF708-201 - 563 1.6e-07 31.5 72.0 3 12 0.0069 4 7.8 2.1 2 37 198 235 197 249 0.76 TFIIH C1-like domain C1_4 PF07975.12 55 ZNF708-201 - 563 1.6e-07 31.5 72.0 4 12 0.011 6.4 7.1 2.7 2 48 226 274 225 277 0.76 TFIIH C1-like domain C1_4 PF07975.12 55 ZNF708-201 - 563 1.6e-07 31.5 72.0 5 12 0.013 7.3 6.9 2.7 1 48 253 302 253 304 0.78 TFIIH C1-like domain C1_4 PF07975.12 55 ZNF708-201 - 563 1.6e-07 31.5 72.0 6 12 0.00017 0.096 12.9 1.6 1 49 281 331 281 333 0.86 TFIIH C1-like domain C1_4 PF07975.12 55 ZNF708-201 - 563 1.6e-07 31.5 72.0 7 12 0.086 50 4.2 0.2 25 48 335 358 331 361 0.82 TFIIH C1-like domain C1_4 PF07975.12 55 ZNF708-201 - 563 1.6e-07 31.5 72.0 8 12 0.017 9.9 6.5 2.8 2 48 366 414 365 417 0.73 TFIIH C1-like domain C1_4 PF07975.12 55 ZNF708-201 - 563 1.6e-07 31.5 72.0 9 12 0.011 6.3 7.1 3.3 2 38 394 432 393 444 0.75 TFIIH C1-like domain C1_4 PF07975.12 55 ZNF708-201 - 563 1.6e-07 31.5 72.0 10 12 0.13 77 3.6 4.4 2 48 422 470 421 472 0.69 TFIIH C1-like domain C1_4 PF07975.12 55 ZNF708-201 - 563 1.6e-07 31.5 72.0 11 12 0.0011 0.62 10.3 3.9 2 49 450 499 449 501 0.83 TFIIH C1-like domain C1_4 PF07975.12 55 ZNF708-201 - 563 1.6e-07 31.5 72.0 12 12 0.019 11 6.3 2.2 1 36 505 542 505 557 0.76 TFIIH C1-like domain # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF708-201.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF708-201.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF708-201.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF708-201.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF708-201.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:13:07 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZNF708-202 - 499 3.5e-120 387.6 131.1 1 16 2.7 1.6e+03 -0.2 0.3 10 24 71 85 56 87 0.74 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF708-202 - 499 3.5e-120 387.6 131.1 2 16 7.4e-09 4.3e-06 26.9 3.1 3 24 92 113 90 113 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF708-202 - 499 3.5e-120 387.6 131.1 3 16 2.5e-11 1.5e-08 34.7 0.6 2 26 119 143 118 143 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF708-202 - 499 3.5e-120 387.6 131.1 4 16 1.8e-11 1e-08 35.2 0.4 1 25 146 170 146 171 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF708-202 - 499 3.5e-120 387.6 131.1 5 16 1.6e-10 9e-08 32.2 0.6 2 25 175 198 174 199 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF708-202 - 499 3.5e-120 387.6 131.1 6 16 2.3e-12 1.3e-09 38.0 1.3 1 26 202 227 202 227 0.97 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF708-202 - 499 3.5e-120 387.6 131.1 7 16 6.6e-11 3.8e-08 33.4 1.0 1 25 230 254 230 254 0.97 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF708-202 - 499 3.5e-120 387.6 131.1 8 16 4.9e-11 2.8e-08 33.8 2.6 1 25 258 282 258 282 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF708-202 - 499 3.5e-120 387.6 131.1 9 16 7e-10 4e-07 30.2 1.5 2 25 287 310 286 311 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF708-202 - 499 3.5e-120 387.6 131.1 10 16 4.9e-10 2.8e-07 30.7 2.6 1 26 314 339 314 339 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF708-202 - 499 3.5e-120 387.6 131.1 11 16 6.3e-10 3.7e-07 30.3 1.6 2 25 343 366 342 366 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF708-202 - 499 3.5e-120 387.6 131.1 12 16 3.3e-08 1.9e-05 24.9 2.3 2 25 371 394 371 395 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF708-202 - 499 3.5e-120 387.6 131.1 13 16 1.4e-10 8.4e-08 32.3 1.7 1 24 398 421 398 422 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF708-202 - 499 3.5e-120 387.6 131.1 14 16 1.3e-10 7.4e-08 32.5 2.1 1 25 426 450 426 451 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF708-202 - 499 3.5e-120 387.6 131.1 15 16 2.2e-11 1.2e-08 34.9 0.6 2 25 455 478 454 479 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF708-202 - 499 3.5e-120 387.6 131.1 16 16 8.7e-07 0.0005 20.4 2.6 1 18 482 499 482 499 0.96 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZNF708-202 - 499 4.7e-80 259.8 107.5 1 15 0.38 2.2e+02 2.6 0.7 6 23 78 98 74 98 0.90 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF708-202 - 499 4.7e-80 259.8 107.5 2 15 8.6e-07 0.0005 20.4 1.8 1 23 104 126 104 126 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF708-202 - 499 4.7e-80 259.8 107.5 3 15 1.4e-08 8.3e-06 26.0 0.6 1 23 132 154 132 154 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF708-202 - 499 4.7e-80 259.8 107.5 4 15 2.4e-08 1.4e-05 25.3 0.5 1 23 160 182 160 182 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF708-202 - 499 4.7e-80 259.8 107.5 5 15 2.8e-09 1.6e-06 28.2 0.6 1 23 188 210 188 210 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF708-202 - 499 4.7e-80 259.8 107.5 6 15 2.7e-09 1.6e-06 28.3 0.9 1 23 216 238 216 238 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF708-202 - 499 4.7e-80 259.8 107.5 7 15 5.6e-08 3.2e-05 24.1 1.8 1 23 244 266 244 266 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF708-202 - 499 4.7e-80 259.8 107.5 8 15 6.9e-07 0.0004 20.7 0.5 1 23 272 294 272 294 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF708-202 - 499 4.7e-80 259.8 107.5 9 15 2.5e-08 1.5e-05 25.2 1.4 1 23 300 322 300 322 0.95 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF708-202 - 499 4.7e-80 259.8 107.5 10 15 6.5e-07 0.00038 20.8 0.8 1 23 328 350 328 350 0.95 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF708-202 - 499 4.7e-80 259.8 107.5 11 15 0.00026 0.15 12.6 0.3 1 23 356 378 356 378 0.90 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF708-202 - 499 4.7e-80 259.8 107.5 12 15 5.6e-08 3.2e-05 24.1 2.2 1 23 384 406 384 406 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF708-202 - 499 4.7e-80 259.8 107.5 13 15 3.6e-07 0.00021 21.6 1.2 1 23 412 434 412 434 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF708-202 - 499 4.7e-80 259.8 107.5 14 15 2.6e-08 1.5e-05 25.2 0.8 1 23 440 462 440 462 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF708-202 - 499 4.7e-80 259.8 107.5 15 15 9.4e-09 5.5e-06 26.6 0.5 1 23 468 490 468 490 0.99 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZNF708-202 - 499 6.3e-43 141.7 103.1 1 14 6.7e-05 0.039 14.8 2.0 1 23 104 126 104 127 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF708-202 - 499 6.3e-43 141.7 103.1 2 14 3.2e-05 0.018 15.8 0.5 1 23 132 154 132 155 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF708-202 - 499 6.3e-43 141.7 103.1 3 14 1.8e-05 0.01 16.6 0.4 1 23 160 182 160 183 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF708-202 - 499 6.3e-43 141.7 103.1 4 14 2e-05 0.012 16.4 0.5 1 23 188 210 188 211 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF708-202 - 499 6.3e-43 141.7 103.1 5 14 7e-06 0.0041 17.9 0.7 1 23 216 238 216 239 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF708-202 - 499 6.3e-43 141.7 103.1 6 14 0.00018 0.1 13.5 1.3 1 23 244 266 244 267 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF708-202 - 499 6.3e-43 141.7 103.1 7 14 9.1e-05 0.053 14.4 0.5 1 23 272 294 272 295 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF708-202 - 499 6.3e-43 141.7 103.1 8 14 3.4e-05 0.02 15.7 1.1 1 23 300 322 300 323 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF708-202 - 499 6.3e-43 141.7 103.1 9 14 0.00017 0.097 13.6 0.7 1 23 328 350 328 351 0.89 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF708-202 - 499 6.3e-43 141.7 103.1 10 14 0.00096 0.56 11.2 0.3 1 23 356 378 356 379 0.83 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF708-202 - 499 6.3e-43 141.7 103.1 11 14 1.3e-05 0.0073 17.1 1.3 1 23 384 406 384 407 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF708-202 - 499 6.3e-43 141.7 103.1 12 14 0.0002 0.12 13.3 1.0 1 23 412 434 412 435 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF708-202 - 499 6.3e-43 141.7 103.1 13 14 2.3e-05 0.013 16.2 0.6 1 23 440 462 440 463 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF708-202 - 499 6.3e-43 141.7 103.1 14 14 3.5e-05 0.02 15.7 0.5 1 23 468 490 468 491 0.94 C2H2-type zinc finger XPA_N PF01286.18 32 ZNF708-202 - 499 5.6e-27 93.5 63.0 1 14 0.015 8.9 6.5 1.2 3 12 105 114 103 122 0.81 XPA protein N-terminal XPA_N PF01286.18 32 ZNF708-202 - 499 5.6e-27 93.5 63.0 2 14 0.00058 0.34 11.0 0.2 3 14 133 144 131 151 0.85 XPA protein N-terminal XPA_N PF01286.18 32 ZNF708-202 - 499 5.6e-27 93.5 63.0 3 14 0.00078 0.45 10.6 0.1 3 14 161 172 159 177 0.90 XPA protein N-terminal XPA_N PF01286.18 32 ZNF708-202 - 499 5.6e-27 93.5 63.0 4 14 0.0019 1.1 9.3 0.2 3 14 189 200 188 206 0.89 XPA protein N-terminal XPA_N PF01286.18 32 ZNF708-202 - 499 5.6e-27 93.5 63.0 5 14 0.00039 0.23 11.5 0.2 3 14 217 228 215 235 0.85 XPA protein N-terminal XPA_N PF01286.18 32 ZNF708-202 - 499 5.6e-27 93.5 63.0 6 14 0.0079 4.6 7.4 0.1 3 15 245 257 243 263 0.81 XPA protein N-terminal XPA_N PF01286.18 32 ZNF708-202 - 499 5.6e-27 93.5 63.0 7 14 0.0063 3.7 7.7 0.2 3 12 273 282 271 286 0.90 XPA protein N-terminal XPA_N PF01286.18 32 ZNF708-202 - 499 5.6e-27 93.5 63.0 8 14 0.00052 0.3 11.1 0.1 3 19 301 317 299 320 0.83 XPA protein N-terminal XPA_N PF01286.18 32 ZNF708-202 - 499 5.6e-27 93.5 63.0 9 14 0.00087 0.51 10.4 0.2 3 14 329 340 327 344 0.91 XPA protein N-terminal XPA_N PF01286.18 32 ZNF708-202 - 499 5.6e-27 93.5 63.0 10 14 0.006 3.5 7.8 0.1 3 12 357 366 355 372 0.91 XPA protein N-terminal XPA_N PF01286.18 32 ZNF708-202 - 499 5.6e-27 93.5 63.0 11 14 0.0019 1.1 9.4 0.3 3 14 385 396 383 403 0.84 XPA protein N-terminal XPA_N PF01286.18 32 ZNF708-202 - 499 5.6e-27 93.5 63.0 12 14 0.002 1.2 9.3 0.2 3 15 413 425 411 431 0.80 XPA protein N-terminal XPA_N PF01286.18 32 ZNF708-202 - 499 5.6e-27 93.5 63.0 13 14 0.0012 0.68 10.0 0.2 3 14 441 452 439 458 0.84 XPA protein N-terminal XPA_N PF01286.18 32 ZNF708-202 - 499 5.6e-27 93.5 63.0 14 14 0.00098 0.57 10.3 0.1 3 14 469 480 467 484 0.92 XPA protein N-terminal zf-C2H2_6 PF13912.6 27 ZNF708-202 - 499 7e-22 76.9 119.3 1 14 0.00037 0.21 11.6 2.2 2 20 104 122 104 127 0.86 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF708-202 - 499 7e-22 76.9 119.3 2 14 8e-05 0.046 13.7 0.9 2 24 132 154 132 157 0.92 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF708-202 - 499 7e-22 76.9 119.3 3 14 0.0041 2.4 8.3 0.5 2 21 160 179 160 184 0.78 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF708-202 - 499 7e-22 76.9 119.3 4 14 7e-06 0.0041 17.1 0.7 2 24 188 210 187 213 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF708-202 - 499 7e-22 76.9 119.3 5 14 0.00018 0.1 12.6 1.8 2 24 216 238 216 241 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF708-202 - 499 7e-22 76.9 119.3 6 14 0.012 6.9 6.8 1.9 2 24 244 266 244 269 0.89 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF708-202 - 499 7e-22 76.9 119.3 7 14 0.00019 0.11 12.5 0.7 2 24 272 294 272 297 0.92 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF708-202 - 499 7e-22 76.9 119.3 8 14 0.0037 2.2 8.4 1.3 2 21 300 319 300 322 0.84 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF708-202 - 499 7e-22 76.9 119.3 9 14 0.0091 5.2 7.2 1.1 2 13 328 339 328 350 0.80 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF708-202 - 499 7e-22 76.9 119.3 10 14 0.0023 1.3 9.1 0.5 2 21 356 375 356 378 0.86 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF708-202 - 499 7e-22 76.9 119.3 11 14 0.00029 0.17 11.9 2.2 2 24 384 406 384 409 0.91 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF708-202 - 499 7e-22 76.9 119.3 12 14 0.055 32 4.7 4.4 2 11 412 421 412 435 0.82 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF708-202 - 499 7e-22 76.9 119.3 13 14 6.1e-05 0.035 14.1 1.0 2 24 440 462 440 465 0.91 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF708-202 - 499 7e-22 76.9 119.3 14 14 4e-05 0.023 14.7 1.0 2 26 468 492 468 493 0.93 C2H2-type zinc finger zf_UBZ PF18439.1 32 ZNF708-202 - 499 8.4e-21 73.3 65.2 1 15 0.14 82 2.9 0.0 24 30 16 22 16 24 0.89 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF708-202 - 499 8.4e-21 73.3 65.2 2 15 0.006 3.5 7.3 1.0 3 21 104 123 102 123 0.87 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF708-202 - 499 8.4e-21 73.3 65.2 3 15 0.0025 1.5 8.5 0.2 3 20 132 150 130 151 0.80 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF708-202 - 499 8.4e-21 73.3 65.2 4 15 0.0035 2 8.1 0.2 3 16 160 174 158 179 0.79 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF708-202 - 499 8.4e-21 73.3 65.2 5 15 0.0041 2.4 7.8 0.1 3 16 188 202 186 207 0.76 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF708-202 - 499 8.4e-21 73.3 65.2 6 15 0.0021 1.2 8.8 0.2 3 20 216 234 214 235 0.81 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF708-202 - 499 8.4e-21 73.3 65.2 7 15 0.017 10 5.8 0.1 3 20 244 262 242 263 0.79 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF708-202 - 499 8.4e-21 73.3 65.2 8 15 0.0017 0.96 9.1 0.1 3 18 272 288 270 291 0.79 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF708-202 - 499 8.4e-21 73.3 65.2 9 15 0.0058 3.3 7.4 0.2 3 15 300 312 298 319 0.80 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF708-202 - 499 8.4e-21 73.3 65.2 10 15 0.0057 3.3 7.4 0.1 3 15 328 340 326 347 0.81 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF708-202 - 499 8.4e-21 73.3 65.2 11 15 0.0024 1.4 8.6 0.1 3 15 356 368 354 375 0.83 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF708-202 - 499 8.4e-21 73.3 65.2 12 15 0.0046 2.6 7.7 0.2 3 13 384 394 382 403 0.81 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF708-202 - 499 8.4e-21 73.3 65.2 13 15 0.0013 0.75 9.4 0.3 3 20 412 430 410 431 0.80 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF708-202 - 499 8.4e-21 73.3 65.2 14 15 0.0072 4.2 7.1 0.1 3 18 440 456 438 459 0.79 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF708-202 - 499 8.4e-21 73.3 65.2 15 15 0.0032 1.9 8.2 0.2 3 20 468 486 466 487 0.81 Ubiquitin-Binding Zinc Finger zf-C2H2_jaz PF12171.8 27 ZNF708-202 - 499 1.2e-20 73.2 76.1 1 15 6.4 3.7e+03 -1.6 0.1 6 12 77 83 76 83 0.79 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF708-202 - 499 1.2e-20 73.2 76.1 2 15 0.016 9.4 6.7 0.7 2 21 104 123 103 124 0.88 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF708-202 - 499 1.2e-20 73.2 76.1 3 15 3.1e-05 0.018 15.3 0.3 2 21 132 151 131 152 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF708-202 - 499 1.2e-20 73.2 76.1 4 15 0.0019 1.1 9.6 0.1 2 21 160 179 159 180 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF708-202 - 499 1.2e-20 73.2 76.1 5 15 0.00039 0.22 11.8 0.3 2 21 188 207 187 208 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF708-202 - 499 1.2e-20 73.2 76.1 6 15 0.00017 0.099 13.0 0.6 2 22 216 236 215 236 0.95 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF708-202 - 499 1.2e-20 73.2 76.1 7 15 0.64 3.7e+02 1.6 0.1 2 21 244 263 243 264 0.79 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF708-202 - 499 1.2e-20 73.2 76.1 8 15 0.14 84 3.6 0.2 2 12 272 282 271 291 0.86 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF708-202 - 499 1.2e-20 73.2 76.1 9 15 0.00023 0.13 12.5 0.3 2 21 300 319 299 320 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF708-202 - 499 1.2e-20 73.2 76.1 10 15 0.0032 1.9 8.9 0.2 2 20 328 346 327 347 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF708-202 - 499 1.2e-20 73.2 76.1 11 15 0.18 1.1e+02 3.3 0.2 2 12 356 366 355 366 0.88 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF708-202 - 499 1.2e-20 73.2 76.1 12 15 0.00017 0.096 13.0 1.4 2 22 384 404 383 404 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF708-202 - 499 1.2e-20 73.2 76.1 13 15 0.01 6.1 7.3 0.2 2 20 412 430 411 431 0.85 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF708-202 - 499 1.2e-20 73.2 76.1 14 15 0.0014 0.8 10.1 0.3 2 21 440 459 439 460 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF708-202 - 499 1.2e-20 73.2 76.1 15 15 0.038 22 5.5 0.2 2 20 468 486 467 488 0.79 Zinc-finger double-stranded RNA-binding zf-C2H2_11 PF16622.5 29 ZNF708-202 - 499 7.7e-19 67.1 45.6 1 14 0.082 47 3.9 1.0 5 24 104 123 101 126 0.75 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF708-202 - 499 7.7e-19 67.1 45.6 2 14 0.078 45 3.9 0.0 5 26 132 153 129 154 0.78 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF708-202 - 499 7.7e-19 67.1 45.6 3 14 0.00086 0.5 10.2 0.0 5 26 160 181 157 182 0.91 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF708-202 - 499 7.7e-19 67.1 45.6 4 14 0.014 7.9 6.3 0.1 5 28 188 210 187 210 0.88 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF708-202 - 499 7.7e-19 67.1 45.6 5 14 0.11 66 3.4 0.1 5 23 216 234 213 238 0.75 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF708-202 - 499 7.7e-19 67.1 45.6 6 14 0.0052 3 7.7 0.2 5 26 244 265 241 266 0.90 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF708-202 - 499 7.7e-19 67.1 45.6 7 14 0.0013 0.76 9.6 0.0 5 26 272 293 269 294 0.91 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF708-202 - 499 7.7e-19 67.1 45.6 8 14 0.081 47 3.9 0.0 5 23 300 318 296 322 0.75 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF708-202 - 499 7.7e-19 67.1 45.6 9 14 0.0049 2.8 7.8 0.0 5 26 328 349 325 350 0.86 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF708-202 - 499 7.7e-19 67.1 45.6 10 14 0.0014 0.79 9.5 0.1 5 26 356 377 354 378 0.91 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF708-202 - 499 7.7e-19 67.1 45.6 11 14 0.17 97 2.9 0.1 5 14 384 393 381 400 0.75 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF708-202 - 499 7.7e-19 67.1 45.6 12 14 0.13 75 3.2 0.2 5 21 412 428 409 434 0.72 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF708-202 - 499 7.7e-19 67.1 45.6 13 14 0.0051 2.9 7.7 0.1 5 26 440 461 437 462 0.90 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF708-202 - 499 7.7e-19 67.1 45.6 14 14 0.0014 0.82 9.5 0.0 5 26 468 489 465 492 0.93 zinc-finger C2H2-type Zn-ribbon_8 PF09723.10 40 ZNF708-202 - 499 4.3e-17 61.9 91.3 1 14 0.018 10 6.3 8.9 6 38 104 143 103 144 0.72 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF708-202 - 499 4.3e-17 61.9 91.3 2 14 0.0013 0.73 10.0 7.0 6 34 132 167 130 169 0.83 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF708-202 - 499 4.3e-17 61.9 91.3 3 14 0.00025 0.15 12.2 6.1 6 38 160 199 159 200 0.83 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF708-202 - 499 4.3e-17 61.9 91.3 4 14 0.00056 0.32 11.1 6.4 6 35 188 224 186 226 0.78 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF708-202 - 499 4.3e-17 61.9 91.3 5 14 0.001 0.59 10.3 5.7 6 34 216 251 215 254 0.84 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF708-202 - 499 4.3e-17 61.9 91.3 6 14 0.0091 5.3 7.3 0.2 6 17 244 255 242 266 0.84 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF708-202 - 499 4.3e-17 61.9 91.3 7 14 5.4e-05 0.031 14.4 5.7 6 37 272 310 271 311 0.71 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF708-202 - 499 4.3e-17 61.9 91.3 8 14 0.00023 0.13 12.4 6.3 6 38 300 339 299 341 0.78 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF708-202 - 499 4.3e-17 61.9 91.3 9 14 0.0028 1.6 8.9 0.6 6 18 328 340 327 350 0.86 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF708-202 - 499 4.3e-17 61.9 91.3 10 14 0.00037 0.21 11.7 5.7 6 34 356 391 355 391 0.76 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF708-202 - 499 4.3e-17 61.9 91.3 11 14 0.00068 0.4 10.9 7.8 6 34 384 419 383 421 0.87 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF708-202 - 499 4.3e-17 61.9 91.3 12 14 0.0011 0.62 10.2 6.2 6 35 412 448 410 451 0.85 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF708-202 - 499 4.3e-17 61.9 91.3 13 14 0.00082 0.47 10.6 5.9 6 34 440 475 438 475 0.78 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF708-202 - 499 4.3e-17 61.9 91.3 14 14 0.0034 2 8.6 1.4 6 18 468 486 466 499 0.68 Zinc ribbon domain zf-trcl PF13451.6 48 ZNF708-202 - 499 3.2e-11 43.0 61.8 1 13 0.032 18 5.3 0.6 4 15 103 114 101 122 0.88 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF708-202 - 499 3.2e-11 43.0 61.8 2 13 0.044 25 4.8 0.2 3 14 130 141 126 146 0.80 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF708-202 - 499 3.2e-11 43.0 61.8 3 13 0.042 24 4.9 0.1 3 14 158 169 156 173 0.85 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF708-202 - 499 3.2e-11 43.0 61.8 4 13 0.23 1.3e+02 2.6 4.9 5 46 188 228 185 230 0.61 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF708-202 - 499 3.2e-11 43.0 61.8 5 13 0.045 26 4.8 0.0 3 15 242 254 240 258 0.86 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF708-202 - 499 3.2e-11 43.0 61.8 6 13 0.022 13 5.8 0.1 3 14 270 281 268 288 0.82 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF708-202 - 499 3.2e-11 43.0 61.8 7 13 0.028 16 5.4 0.1 2 14 297 309 295 313 0.86 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF708-202 - 499 3.2e-11 43.0 61.8 8 13 0.02 12 5.9 0.1 3 15 326 338 324 342 0.88 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF708-202 - 499 3.2e-11 43.0 61.8 9 13 0.039 22 5.0 0.1 3 14 354 365 352 370 0.83 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF708-202 - 499 3.2e-11 43.0 61.8 10 13 6.3e-05 0.036 14.0 3.3 1 39 380 417 380 417 0.90 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF708-202 - 499 3.2e-11 43.0 61.8 11 13 0.0054 3.1 7.7 0.1 3 16 410 423 408 426 0.87 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF708-202 - 499 3.2e-11 43.0 61.8 12 13 0.018 10 6.1 0.1 3 14 438 449 436 453 0.86 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF708-202 - 499 3.2e-11 43.0 61.8 13 13 0.045 26 4.8 0.1 3 14 466 477 464 480 0.86 Probable zinc-ribbon domain C1_4 PF07975.12 55 ZNF708-202 - 499 4.8e-08 33.1 72.4 1 13 5.6 3.2e+03 -1.6 0.1 26 43 65 82 44 86 0.59 TFIIH C1-like domain C1_4 PF07975.12 55 ZNF708-202 - 499 4.8e-08 33.1 72.4 2 13 0.0002 0.12 12.7 2.8 16 49 92 127 76 130 0.74 TFIIH C1-like domain C1_4 PF07975.12 55 ZNF708-202 - 499 4.8e-08 33.1 72.4 3 13 0.0054 3.1 8.1 2.0 2 36 134 170 133 184 0.76 TFIIH C1-like domain C1_4 PF07975.12 55 ZNF708-202 - 499 4.8e-08 33.1 72.4 4 13 0.009 5.2 7.4 2.6 2 48 162 210 161 213 0.76 TFIIH C1-like domain C1_4 PF07975.12 55 ZNF708-202 - 499 4.8e-08 33.1 72.4 5 13 0.0099 5.7 7.3 2.6 1 48 189 238 189 240 0.78 TFIIH C1-like domain C1_4 PF07975.12 55 ZNF708-202 - 499 4.8e-08 33.1 72.4 6 13 0.00014 0.08 13.2 1.6 1 49 217 267 217 269 0.86 TFIIH C1-like domain C1_4 PF07975.12 55 ZNF708-202 - 499 4.8e-08 33.1 72.4 7 13 0.075 43 4.4 0.2 25 48 271 294 267 297 0.82 TFIIH C1-like domain C1_4 PF07975.12 55 ZNF708-202 - 499 4.8e-08 33.1 72.4 8 13 0.014 8.3 6.7 2.7 2 48 302 350 301 352 0.72 TFIIH C1-like domain C1_4 PF07975.12 55 ZNF708-202 - 499 4.8e-08 33.1 72.4 9 13 0.0097 5.6 7.3 3.2 2 38 330 368 329 379 0.75 TFIIH C1-like domain C1_4 PF07975.12 55 ZNF708-202 - 499 4.8e-08 33.1 72.4 10 13 0.11 64 3.9 4.4 2 48 358 406 357 408 0.69 TFIIH C1-like domain C1_4 PF07975.12 55 ZNF708-202 - 499 4.8e-08 33.1 72.4 11 13 0.00081 0.47 10.7 3.7 2 49 386 435 385 438 0.84 TFIIH C1-like domain C1_4 PF07975.12 55 ZNF708-202 - 499 4.8e-08 33.1 72.4 12 13 0.23 1.4e+02 2.8 0.3 25 48 439 462 433 465 0.78 TFIIH C1-like domain C1_4 PF07975.12 55 ZNF708-202 - 499 4.8e-08 33.1 72.4 13 13 0.02 12 6.2 2.5 1 36 441 478 441 493 0.76 TFIIH C1-like domain zf-C2H2_8 PF15909.5 98 ZNF708-202 - 499 4.7e-07 30.0 58.1 1 11 0.0019 1.1 9.6 3.4 30 86 97 151 77 159 0.78 C2H2-type zinc ribbon zf-C2H2_8 PF15909.5 98 ZNF708-202 - 499 4.7e-07 30.0 58.1 2 11 0.018 10 6.5 0.4 43 86 137 179 136 184 0.82 C2H2-type zinc ribbon zf-C2H2_8 PF15909.5 98 ZNF708-202 - 499 4.7e-07 30.0 58.1 3 11 0.0017 0.97 9.8 1.1 38 88 162 209 155 215 0.81 C2H2-type zinc ribbon zf-C2H2_8 PF15909.5 98 ZNF708-202 - 499 4.7e-07 30.0 58.1 4 11 0.0038 2.2 8.6 2.5 34 88 186 237 182 245 0.81 C2H2-type zinc ribbon zf-C2H2_8 PF15909.5 98 ZNF708-202 - 499 4.7e-07 30.0 58.1 5 11 0.012 7.1 7.0 1.7 37 85 217 262 207 268 0.72 C2H2-type zinc ribbon zf-C2H2_8 PF15909.5 98 ZNF708-202 - 499 4.7e-07 30.0 58.1 6 11 0.00049 0.28 11.5 2.1 36 90 244 295 235 299 0.82 C2H2-type zinc ribbon zf-C2H2_8 PF15909.5 98 ZNF708-202 - 499 4.7e-07 30.0 58.1 7 11 0.009 5.2 7.4 4.5 21 85 255 318 251 327 0.61 C2H2-type zinc ribbon zf-C2H2_8 PF15909.5 98 ZNF708-202 - 499 4.7e-07 30.0 58.1 8 11 0.024 14 6.1 1.8 34 85 298 346 292 352 0.76 C2H2-type zinc ribbon zf-C2H2_8 PF15909.5 98 ZNF708-202 - 499 4.7e-07 30.0 58.1 9 11 0.01 6 7.2 3.3 34 90 326 379 310 384 0.74 C2H2-type zinc ribbon zf-C2H2_8 PF15909.5 98 ZNF708-202 - 499 4.7e-07 30.0 58.1 10 11 0.0068 4 7.8 2.5 33 85 381 430 376 438 0.74 C2H2-type zinc ribbon zf-C2H2_8 PF15909.5 98 ZNF708-202 - 499 4.7e-07 30.0 58.1 11 11 0.00053 0.31 11.4 2.9 33 89 437 490 421 496 0.75 C2H2-type zinc ribbon DNA_RNApol_7kD PF03604.13 32 ZNF708-202 - 499 5.8e-07 29.1 55.8 1 14 0.018 11 5.8 0.5 15 24 101 110 92 112 0.80 DNA directed RNA polymerase, 7 kDa subunit DNA_RNApol_7kD PF03604.13 32 ZNF708-202 - 499 5.8e-07 29.1 55.8 2 14 0.11 64 3.3 0.2 1 9 132 140 128 146 0.75 DNA directed RNA polymerase, 7 kDa subunit DNA_RNApol_7kD PF03604.13 32 ZNF708-202 - 499 5.8e-07 29.1 55.8 3 14 0.13 74 3.1 0.1 1 8 160 167 156 173 0.76 DNA directed RNA polymerase, 7 kDa subunit DNA_RNApol_7kD PF03604.13 32 ZNF708-202 - 499 5.8e-07 29.1 55.8 4 14 0.15 89 2.9 0.2 1 9 188 196 188 202 0.78 DNA directed RNA polymerase, 7 kDa subunit DNA_RNApol_7kD PF03604.13 32 ZNF708-202 - 499 5.8e-07 29.1 55.8 5 14 0.11 62 3.4 0.1 1 9 216 224 213 230 0.75 DNA directed RNA polymerase, 7 kDa subunit DNA_RNApol_7kD PF03604.13 32 ZNF708-202 - 499 5.8e-07 29.1 55.8 6 14 0.0013 0.72 9.6 0.1 1 13 244 256 244 258 0.89 DNA directed RNA polymerase, 7 kDa subunit DNA_RNApol_7kD PF03604.13 32 ZNF708-202 - 499 5.8e-07 29.1 55.8 7 14 0.079 46 3.8 0.1 1 11 272 282 269 286 0.79 DNA directed RNA polymerase, 7 kDa subunit DNA_RNApol_7kD PF03604.13 32 ZNF708-202 - 499 5.8e-07 29.1 55.8 8 14 0.1 60 3.4 0.1 1 8 300 307 289 312 0.73 DNA directed RNA polymerase, 7 kDa subunit DNA_RNApol_7kD PF03604.13 32 ZNF708-202 - 499 5.8e-07 29.1 55.8 9 14 0.11 63 3.4 0.1 1 8 328 335 320 341 0.78 DNA directed RNA polymerase, 7 kDa subunit DNA_RNApol_7kD PF03604.13 32 ZNF708-202 - 499 5.8e-07 29.1 55.8 10 14 0.046 27 4.6 0.1 1 12 356 367 355 369 0.86 DNA directed RNA polymerase, 7 kDa subunit DNA_RNApol_7kD PF03604.13 32 ZNF708-202 - 499 5.8e-07 29.1 55.8 11 14 0.079 46 3.8 0.1 1 9 384 392 374 398 0.76 DNA directed RNA polymerase, 7 kDa subunit DNA_RNApol_7kD PF03604.13 32 ZNF708-202 - 499 5.8e-07 29.1 55.8 12 14 0.06 35 4.2 0.1 1 12 412 423 410 426 0.79 DNA directed RNA polymerase, 7 kDa subunit DNA_RNApol_7kD PF03604.13 32 ZNF708-202 - 499 5.8e-07 29.1 55.8 13 14 0.041 24 4.7 0.2 18 24 440 446 431 450 0.78 DNA directed RNA polymerase, 7 kDa subunit DNA_RNApol_7kD PF03604.13 32 ZNF708-202 - 499 5.8e-07 29.1 55.8 14 14 0.1 60 3.4 0.1 1 9 468 476 465 482 0.75 DNA directed RNA polymerase, 7 kDa subunit # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF708-202.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF708-202.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF708-202.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF708-202.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF708-202.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:13:08 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF708-203.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF708-203.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF708-203.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF708-203.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF708-203.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:13:08 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF708-204.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF708-204.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF708-204.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF708-204.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF708-204.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:13:09 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZNF709-201 - 641 1.6e-144 464.6 189.8 1 20 0.00046 0.52 10.8 1.1 10 24 97 111 93 111 0.83 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF709-201 - 641 1.6e-144 464.6 189.8 2 20 9.3e-09 1e-05 25.7 4.4 1 25 116 150 116 150 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF709-201 - 641 1.6e-144 464.6 189.8 3 20 1.2e-10 1.3e-07 31.7 1.9 2 25 155 178 154 178 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF709-201 - 641 1.6e-144 464.6 189.8 4 20 5.6e-11 6.2e-08 32.7 1.0 3 24 184 205 182 207 0.90 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF709-201 - 641 1.6e-144 464.6 189.8 5 20 3.5e-11 3.9e-08 33.3 4.5 3 26 212 235 211 235 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF709-201 - 641 1.6e-144 464.6 189.8 6 20 2e-10 2.2e-07 31.0 2.2 2 25 239 262 238 263 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF709-201 - 641 1.6e-144 464.6 189.8 7 20 3.6e-09 4e-06 27.0 2.0 5 23 270 288 267 291 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF709-201 - 641 1.6e-144 464.6 189.8 8 20 2.4e-11 2.7e-08 33.9 2.5 2 25 295 318 294 318 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF709-201 - 641 1.6e-144 464.6 189.8 9 20 5.3e-11 6e-08 32.8 0.8 2 25 323 346 322 347 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF709-201 - 641 1.6e-144 464.6 189.8 10 20 1.8e-10 2e-07 31.1 1.6 1 25 350 374 350 375 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF709-201 - 641 1.6e-144 464.6 189.8 11 20 1.3e-10 1.4e-07 31.6 2.7 3 25 380 402 378 403 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF709-201 - 641 1.6e-144 464.6 189.8 12 20 2.7e-10 3.1e-07 30.5 4.8 2 25 407 430 406 431 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF709-201 - 641 1.6e-144 464.6 189.8 13 20 9.6e-11 1.1e-07 32.0 2.2 4 25 437 458 434 459 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF709-201 - 641 1.6e-144 464.6 189.8 14 20 2e-11 2.3e-08 34.1 1.0 2 25 463 486 462 486 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF709-201 - 641 1.6e-144 464.6 189.8 15 20 4.7e-11 5.2e-08 33.0 3.4 2 25 491 514 490 515 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF709-201 - 641 1.6e-144 464.6 189.8 16 20 4.7e-11 5.2e-08 33.0 3.4 2 25 519 542 518 543 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF709-201 - 641 1.6e-144 464.6 189.8 17 20 1e-10 1.2e-07 31.9 2.1 5 25 550 570 546 571 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF709-201 - 641 1.6e-144 464.6 189.8 18 20 1.6e-10 1.8e-07 31.3 2.3 3 25 576 598 574 599 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF709-201 - 641 1.6e-144 464.6 189.8 19 20 4.1e-10 4.6e-07 30.0 2.5 2 26 603 627 602 627 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF709-201 - 641 1.6e-144 464.6 189.8 20 20 0.87 9.8e+02 0.5 0.1 2 12 631 641 630 641 0.84 Zinc-finger double domain zf-C2H2_4 PF13894.6 24 ZNF709-201 - 641 1.2e-62 203.1 183.9 1 19 1.2e-06 0.0013 19.4 3.9 1 23 102 124 102 125 0.97 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF709-201 - 641 1.2e-62 203.1 183.9 2 19 1.2e-05 0.013 16.3 1.9 1 23 140 162 140 163 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF709-201 - 641 1.2e-62 203.1 183.9 3 19 8.9e-05 0.1 13.5 0.9 1 23 168 190 168 191 0.87 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF709-201 - 641 1.2e-62 203.1 183.9 4 19 2.1e-05 0.023 15.5 1.5 1 23 196 218 196 219 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF709-201 - 641 1.2e-62 203.1 183.9 5 19 1.6e-06 0.0018 19.0 3.5 1 23 224 246 224 247 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF709-201 - 641 1.2e-62 203.1 183.9 6 19 9e-06 0.01 16.6 1.2 1 23 252 274 252 275 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF709-201 - 641 1.2e-62 203.1 183.9 7 19 2.8e-05 0.031 15.1 2.2 1 23 280 302 280 303 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF709-201 - 641 1.2e-62 203.1 183.9 8 19 1.5e-05 0.017 15.9 2.1 1 23 308 330 308 331 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF709-201 - 641 1.2e-62 203.1 183.9 9 19 1.5e-05 0.017 15.9 0.2 3 23 338 358 336 359 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF709-201 - 641 1.2e-62 203.1 183.9 10 19 5.3e-06 0.0059 17.3 2.0 1 23 364 386 364 387 0.97 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF709-201 - 641 1.2e-62 203.1 183.9 11 19 5e-06 0.0056 17.4 3.7 1 23 392 414 392 415 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF709-201 - 641 1.2e-62 203.1 183.9 12 19 2.1e-05 0.024 15.5 3.8 1 23 420 442 420 443 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF709-201 - 641 1.2e-62 203.1 183.9 13 19 1.3e-05 0.015 16.1 3.0 1 23 448 470 448 471 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF709-201 - 641 1.2e-62 203.1 183.9 14 19 1.8e-05 0.02 15.7 1.9 1 23 476 498 476 499 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF709-201 - 641 1.2e-62 203.1 183.9 15 19 5e-06 0.0056 17.4 3.7 1 23 504 526 504 527 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF709-201 - 641 1.2e-62 203.1 183.9 16 19 2.8e-06 0.0031 18.2 2.0 1 23 532 554 532 555 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF709-201 - 641 1.2e-62 203.1 183.9 17 19 6.9e-06 0.0078 17.0 2.8 1 23 560 582 560 583 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF709-201 - 641 1.2e-62 203.1 183.9 18 19 1.1e-05 0.013 16.3 3.4 1 23 588 610 588 611 0.97 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF709-201 - 641 1.2e-62 203.1 183.9 19 19 2.2e-05 0.024 15.4 2.6 1 23 616 638 616 639 0.95 C2H2-type zinc finger zf-C2H2 PF00096.26 23 ZNF709-201 - 641 2.2e-60 197.9 188.8 1 19 0.00018 0.21 12.1 5.1 1 23 102 124 102 124 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF709-201 - 641 2.2e-60 197.9 188.8 2 19 2.6e-07 0.00029 21.1 2.5 1 23 140 162 140 162 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF709-201 - 641 2.2e-60 197.9 188.8 3 19 1.1e-06 0.0012 19.2 0.7 1 23 168 190 168 190 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF709-201 - 641 2.2e-60 197.9 188.8 4 19 2.1e-06 0.0024 18.2 2.4 1 23 196 218 196 218 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF709-201 - 641 2.2e-60 197.9 188.8 5 19 1.5e-08 1.6e-05 25.0 4.4 1 23 224 246 224 246 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF709-201 - 641 2.2e-60 197.9 188.8 6 19 4.7e-06 0.0053 17.2 1.7 1 23 252 274 252 274 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF709-201 - 641 2.2e-60 197.9 188.8 7 19 0.00059 0.66 10.5 2.3 1 23 280 302 280 302 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF709-201 - 641 2.2e-60 197.9 188.8 8 19 4e-08 4.5e-05 23.7 2.4 1 23 308 330 308 330 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF709-201 - 641 2.2e-60 197.9 188.8 9 19 4.9e-07 0.00055 20.3 0.4 1 23 336 358 336 358 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF709-201 - 641 2.2e-60 197.9 188.8 10 19 6.4e-06 0.0071 16.7 2.1 1 23 364 386 364 386 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF709-201 - 641 2.2e-60 197.9 188.8 11 19 4.5e-05 0.05 14.1 4.0 1 23 392 414 392 414 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF709-201 - 641 2.2e-60 197.9 188.8 12 19 0.00034 0.38 11.3 3.9 1 23 420 442 420 442 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF709-201 - 641 2.2e-60 197.9 188.8 13 19 6.4e-05 0.072 13.6 3.1 1 23 448 470 448 470 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF709-201 - 641 2.2e-60 197.9 188.8 14 19 4.1e-07 0.00045 20.5 2.1 1 23 476 498 476 498 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF709-201 - 641 2.2e-60 197.9 188.8 15 19 4.5e-05 0.05 14.1 4.0 1 23 504 526 504 526 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF709-201 - 641 2.2e-60 197.9 188.8 16 19 5e-05 0.056 13.9 2.1 1 23 532 554 532 554 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF709-201 - 641 2.2e-60 197.9 188.8 17 19 8.9e-05 0.099 13.1 2.9 1 23 560 582 560 582 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF709-201 - 641 2.2e-60 197.9 188.8 18 19 0.00031 0.35 11.4 4.0 1 23 588 610 588 610 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF709-201 - 641 2.2e-60 197.9 188.8 19 19 0.00044 0.5 10.9 2.4 1 23 616 638 616 638 0.97 Zinc finger, C2H2 type KRAB PF01352.27 42 ZNF709-201 - 641 1e-22 79.5 0.1 1 1 1.4e-25 1.5e-22 78.9 0.1 1 42 3 44 3 44 0.98 KRAB box zf-C2H2_6 PF13912.6 27 ZNF709-201 - 641 2.3e-19 68.9 169.7 1 20 0.00088 0.99 9.5 4.0 2 24 102 124 102 126 0.96 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF709-201 - 641 2.3e-19 68.9 169.7 2 20 0.00021 0.24 11.5 1.3 2 12 140 150 139 153 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF709-201 - 641 2.3e-19 68.9 169.7 3 20 0.0024 2.7 8.1 1.1 2 12 168 178 168 178 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF709-201 - 641 2.3e-19 68.9 169.7 4 20 8e-05 0.09 12.8 1.6 2 24 196 218 196 221 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF709-201 - 641 2.3e-19 68.9 169.7 5 20 0.00043 0.49 10.5 2.7 2 24 224 246 224 249 0.74 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF709-201 - 641 2.3e-19 68.9 169.7 6 20 1.1e-05 0.012 15.6 1.9 2 15 252 265 252 276 0.83 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF709-201 - 641 2.3e-19 68.9 169.7 7 20 0.056 63 3.7 1.0 2 11 280 289 280 300 0.89 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF709-201 - 641 2.3e-19 68.9 169.7 8 20 0.0094 11 6.2 1.5 2 12 308 318 308 320 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF709-201 - 641 2.3e-19 68.9 169.7 9 20 0.001 1.1 9.3 0.1 2 24 336 358 336 359 0.82 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF709-201 - 641 2.3e-19 68.9 169.7 10 20 0.0025 2.9 8.0 0.9 2 11 364 373 364 374 0.95 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF709-201 - 641 2.3e-19 68.9 169.7 11 20 0.002 2.2 8.4 4.0 2 24 392 414 392 417 0.87 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF709-201 - 641 2.3e-19 68.9 169.7 12 20 0.0017 1.9 8.6 2.0 2 12 420 430 420 442 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF709-201 - 641 2.3e-19 68.9 169.7 13 20 0.0024 2.7 8.1 2.1 2 12 448 458 448 470 0.90 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF709-201 - 641 2.3e-19 68.9 169.7 14 20 0.00061 0.69 10.0 2.1 2 24 476 498 476 501 0.85 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF709-201 - 641 2.3e-19 68.9 169.7 15 20 0.002 2.2 8.4 4.0 2 24 504 526 504 529 0.87 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF709-201 - 641 2.3e-19 68.9 169.7 16 20 0.0018 2.1 8.5 1.6 2 12 532 542 532 554 0.91 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF709-201 - 641 2.3e-19 68.9 169.7 17 20 0.0016 1.8 8.7 3.0 2 24 560 582 560 584 0.83 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF709-201 - 641 2.3e-19 68.9 169.7 18 20 0.0074 8.3 6.5 2.8 2 12 588 598 588 610 0.92 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF709-201 - 641 2.3e-19 68.9 169.7 19 20 0.009 10 6.3 0.5 2 12 616 626 616 627 0.91 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF709-201 - 641 2.3e-19 68.9 169.7 20 20 5 5.6e+03 -2.5 0.0 7 12 627 632 626 632 0.87 C2H2-type zinc finger Zn_ribbon_SprT PF17283.2 38 ZNF709-201 - 641 6.3e-13 48.4 108.9 1 12 0.012 13 5.8 3.0 5 23 102 120 101 132 0.92 SprT-like zinc ribbon domain Zn_ribbon_SprT PF17283.2 38 ZNF709-201 - 641 6.3e-13 48.4 108.9 2 12 2.1e-06 0.0023 17.8 3.2 5 32 140 175 139 178 0.94 SprT-like zinc ribbon domain Zn_ribbon_SprT PF17283.2 38 ZNF709-201 - 641 6.3e-13 48.4 108.9 3 12 0.0032 3.6 7.6 1.4 5 28 196 227 195 227 0.92 SprT-like zinc ribbon domain Zn_ribbon_SprT PF17283.2 38 ZNF709-201 - 641 6.3e-13 48.4 108.9 4 12 6.6e-07 0.00074 19.4 2.9 5 34 224 261 223 264 0.94 SprT-like zinc ribbon domain Zn_ribbon_SprT PF17283.2 38 ZNF709-201 - 641 6.3e-13 48.4 108.9 5 12 0.031 35 4.4 0.5 21 35 272 290 265 293 0.82 SprT-like zinc ribbon domain Zn_ribbon_SprT PF17283.2 38 ZNF709-201 - 641 6.3e-13 48.4 108.9 6 12 0.00039 0.44 10.5 1.0 5 32 308 343 307 348 0.91 SprT-like zinc ribbon domain Zn_ribbon_SprT PF17283.2 38 ZNF709-201 - 641 6.3e-13 48.4 108.9 7 12 0.00086 0.96 9.4 4.9 5 36 364 403 363 405 0.93 SprT-like zinc ribbon domain Zn_ribbon_SprT PF17283.2 38 ZNF709-201 - 641 6.3e-13 48.4 108.9 8 12 0.011 12 5.9 5.0 6 36 421 459 419 461 0.90 SprT-like zinc ribbon domain Zn_ribbon_SprT PF17283.2 38 ZNF709-201 - 641 6.3e-13 48.4 108.9 9 12 0.00016 0.18 11.7 1.8 5 36 476 515 475 517 0.93 SprT-like zinc ribbon domain Zn_ribbon_SprT PF17283.2 38 ZNF709-201 - 641 6.3e-13 48.4 108.9 10 12 0.0015 1.7 8.6 4.9 5 36 532 571 531 573 0.93 SprT-like zinc ribbon domain Zn_ribbon_SprT PF17283.2 38 ZNF709-201 - 641 6.3e-13 48.4 108.9 11 12 0.056 63 3.6 6.2 5 34 560 597 559 601 0.91 SprT-like zinc ribbon domain Zn_ribbon_SprT PF17283.2 38 ZNF709-201 - 641 6.3e-13 48.4 108.9 12 12 0.017 19 5.3 7.7 5 37 588 628 587 629 0.92 SprT-like zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF709-201 - 641 4e-12 46.1 139.1 1 16 0.32 3.6e+02 1.4 0.5 6 15 102 111 100 122 0.86 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF709-201 - 641 4e-12 46.1 139.1 2 16 0.00022 0.25 11.5 8.4 6 34 140 175 129 178 0.74 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF709-201 - 641 4e-12 46.1 139.1 3 16 9e-05 0.1 12.8 4.5 6 34 168 203 166 206 0.82 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF709-201 - 641 4e-12 46.1 139.1 4 16 0.00084 0.95 9.6 6.4 6 34 196 231 195 234 0.86 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF709-201 - 641 4e-12 46.1 139.1 5 16 0.0011 1.3 9.2 0.7 6 19 224 237 222 247 0.79 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF709-201 - 641 4e-12 46.1 139.1 6 16 4.1e-05 0.046 13.9 3.4 6 35 252 288 251 290 0.73 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF709-201 - 641 4e-12 46.1 139.1 7 16 1.8e-05 0.02 15.0 2.7 6 34 308 343 307 347 0.89 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF709-201 - 641 4e-12 46.1 139.1 8 16 0.00032 0.36 11.0 7.6 6 34 364 399 363 401 0.82 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF709-201 - 641 4e-12 46.1 139.1 9 16 0.0018 2 8.6 9.2 6 34 392 427 391 432 0.86 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF709-201 - 641 4e-12 46.1 139.1 10 16 0.0012 1.4 9.1 8.0 6 34 448 483 447 486 0.84 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF709-201 - 641 4e-12 46.1 139.1 11 16 0.00023 0.25 11.5 5.9 6 34 476 511 475 514 0.83 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF709-201 - 641 4e-12 46.1 139.1 12 16 0.0011 1.2 9.3 7.9 6 34 504 539 503 542 0.85 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF709-201 - 641 4e-12 46.1 139.1 13 16 0.0033 3.8 7.7 9.2 6 34 532 567 531 571 0.82 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF709-201 - 641 4e-12 46.1 139.1 14 16 0.05 56 4.0 7.8 6 32 560 593 558 593 0.73 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF709-201 - 641 4e-12 46.1 139.1 15 16 0.021 24 5.2 9.8 6 35 588 624 585 631 0.80 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF709-201 - 641 4e-12 46.1 139.1 16 16 0.013 15 5.8 0.9 6 16 616 626 614 636 0.80 Zinc ribbon domain zf-C2H2_jaz PF12171.8 27 ZNF709-201 - 641 2.7e-11 43.4 136.0 1 19 0.093 1e+02 3.3 2.0 2 24 102 124 101 128 0.89 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF709-201 - 641 2.7e-11 43.4 136.0 2 19 0.0035 3.9 7.9 1.2 2 24 140 162 139 162 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF709-201 - 641 2.7e-11 43.4 136.0 3 19 0.0026 3 8.3 0.4 2 24 168 190 167 190 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF709-201 - 641 2.7e-11 43.4 136.0 4 19 0.00058 0.65 10.4 0.1 2 22 196 216 195 216 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF709-201 - 641 2.7e-11 43.4 136.0 5 19 2.8e-07 0.00031 20.9 1.1 2 24 224 246 223 247 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF709-201 - 641 2.7e-11 43.4 136.0 6 19 0.074 83 3.6 1.2 2 24 252 274 251 274 0.89 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF709-201 - 641 2.7e-11 43.4 136.0 7 19 2.4 2.7e+03 -1.2 0.2 4 22 282 300 279 300 0.78 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF709-201 - 641 2.7e-11 43.4 136.0 8 19 0.068 76 3.8 0.2 2 22 308 328 307 328 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF709-201 - 641 2.7e-11 43.4 136.0 9 19 0.0085 9.5 6.6 0.0 2 21 336 355 335 356 0.86 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF709-201 - 641 2.7e-11 43.4 136.0 10 19 0.0038 4.3 7.8 1.1 2 24 364 386 363 386 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF709-201 - 641 2.7e-11 43.4 136.0 11 19 0.0078 8.7 6.8 4.0 2 24 392 414 391 420 0.88 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF709-201 - 641 2.7e-11 43.4 136.0 12 19 0.13 1.5e+02 2.8 2.0 2 24 420 442 419 442 0.89 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF709-201 - 641 2.7e-11 43.4 136.0 13 19 0.0067 7.5 7.0 0.6 2 22 448 468 447 468 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF709-201 - 641 2.7e-11 43.4 136.0 14 19 0.0017 1.9 8.9 0.8 2 24 476 498 475 498 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF709-201 - 641 2.7e-11 43.4 136.0 15 19 0.0027 3 8.2 1.8 2 24 504 526 503 526 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF709-201 - 641 2.7e-11 43.4 136.0 16 19 0.066 73 3.8 1.1 2 24 532 554 531 554 0.88 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF709-201 - 641 2.7e-11 43.4 136.0 17 19 0.017 19 5.7 1.0 2 24 560 582 559 582 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF709-201 - 641 2.7e-11 43.4 136.0 18 19 0.00097 1.1 9.6 2.2 2 24 588 610 587 610 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF709-201 - 641 2.7e-11 43.4 136.0 19 19 0.029 32 4.9 0.6 2 22 616 636 615 636 0.90 Zinc-finger double-stranded RNA-binding DUF3268 PF11672.8 118 ZNF709-201 - 641 1.8e-09 38.0 84.1 1 11 0.11 1.2e+02 3.0 2.9 15 39 124 148 100 165 0.69 zinc-finger-containing domain DUF3268 PF11672.8 118 ZNF709-201 - 641 1.8e-09 38.0 84.1 2 11 0.00013 0.14 12.5 1.3 3 38 140 175 133 190 0.91 zinc-finger-containing domain DUF3268 PF11672.8 118 ZNF709-201 - 641 1.8e-09 38.0 84.1 3 11 7e-05 0.079 13.3 1.4 2 40 167 205 166 216 0.87 zinc-finger-containing domain DUF3268 PF11672.8 118 ZNF709-201 - 641 1.8e-09 38.0 84.1 4 11 0.022 25 5.2 1.8 2 38 195 231 194 245 0.89 zinc-finger-containing domain DUF3268 PF11672.8 118 ZNF709-201 - 641 1.8e-09 38.0 84.1 5 11 0.00026 0.29 11.5 2.6 2 40 251 289 250 299 0.89 zinc-finger-containing domain DUF3268 PF11672.8 118 ZNF709-201 - 641 1.8e-09 38.0 84.1 6 11 0.019 21 5.4 0.3 2 37 307 342 306 352 0.85 zinc-finger-containing domain DUF3268 PF11672.8 118 ZNF709-201 - 641 1.8e-09 38.0 84.1 7 11 0.00083 0.93 9.8 2.4 3 40 364 401 362 416 0.77 zinc-finger-containing domain DUF3268 PF11672.8 118 ZNF709-201 - 641 1.8e-09 38.0 84.1 8 11 0.00022 0.24 11.7 2.6 2 40 419 457 418 470 0.86 zinc-finger-containing domain DUF3268 PF11672.8 118 ZNF709-201 - 641 1.8e-09 38.0 84.1 9 11 0.00027 0.3 11.4 1.5 2 40 475 513 474 528 0.77 zinc-finger-containing domain DUF3268 PF11672.8 118 ZNF709-201 - 641 1.8e-09 38.0 84.1 10 11 8.6e-05 0.096 13.0 3.7 2 47 531 582 530 585 0.84 zinc-finger-containing domain DUF3268 PF11672.8 118 ZNF709-201 - 641 1.8e-09 38.0 84.1 11 11 0.011 12 6.2 3.2 2 43 587 628 586 635 0.87 zinc-finger-containing domain # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF709-201.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF709-201.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF709-201.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF709-201.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF709-201.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:13:09 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF709-202.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF709-202.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF709-202.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF709-202.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF709-202.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:13:10 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF709-203.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF709-203.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF709-203.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF709-203.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF709-203.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:13:10 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-C2H2 PF00096.26 23 ZNF710-201 - 664 2e-47 157.0 105.7 1 11 7.6e-07 0.00059 20.1 0.4 2 23 296 317 295 317 0.95 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF710-201 - 664 2e-47 157.0 105.7 2 11 2.4e-06 0.0018 18.6 6.6 1 23 323 345 323 345 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF710-201 - 664 2e-47 157.0 105.7 3 11 6.1e-07 0.00048 20.4 7.5 1 23 351 373 351 373 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF710-201 - 664 2e-47 157.0 105.7 4 11 1.7e-06 0.0013 19.0 0.8 1 23 379 401 379 401 0.95 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF710-201 - 664 2e-47 157.0 105.7 5 11 1.1e-05 0.0088 16.5 2.2 1 23 407 429 405 429 0.94 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF710-201 - 664 2e-47 157.0 105.7 6 11 4e-07 0.00031 21.0 3.7 1 23 435 457 435 457 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF710-201 - 664 2e-47 157.0 105.7 7 11 1.3e-05 0.01 16.2 2.8 1 23 463 485 463 485 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF710-201 - 664 2e-47 157.0 105.7 8 11 2.2e-07 0.00017 21.9 0.3 1 23 491 513 491 513 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF710-201 - 664 2e-47 157.0 105.7 9 11 5.7e-07 0.00044 20.5 3.1 1 23 519 541 519 541 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF710-201 - 664 2e-47 157.0 105.7 10 11 2.1e-07 0.00016 21.9 2.8 1 23 547 569 547 569 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF710-201 - 664 2e-47 157.0 105.7 11 11 2.5e-06 0.002 18.5 2.1 1 23 575 598 575 598 0.98 Zinc finger, C2H2 type zf-H2C2_2 PF13465.6 26 ZNF710-201 - 664 7.3e-46 152.6 87.6 1 12 0.098 76 4.0 0.1 12 26 292 306 290 306 0.89 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF710-201 - 664 7.3e-46 152.6 87.6 2 12 2.8e-07 0.00022 21.5 1.2 1 26 309 334 309 334 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF710-201 - 664 7.3e-46 152.6 87.6 3 12 5.1e-07 0.0004 20.7 4.0 1 25 337 361 337 362 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF710-201 - 664 7.3e-46 152.6 87.6 4 12 8.7e-07 0.00068 19.9 3.1 1 25 365 389 365 390 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF710-201 - 664 7.3e-46 152.6 87.6 5 12 1.9 1.5e+03 -0.1 1.0 2 25 394 417 393 418 0.80 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF710-201 - 664 7.3e-46 152.6 87.6 6 12 2e-08 1.6e-05 25.1 1.0 2 24 422 444 421 446 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF710-201 - 664 7.3e-46 152.6 87.6 7 12 3.6e-06 0.0028 18.0 0.1 2 25 450 473 449 474 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF710-201 - 664 7.3e-46 152.6 87.6 8 12 2e-06 0.0015 18.8 2.1 1 25 477 501 477 501 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF710-201 - 664 7.3e-46 152.6 87.6 9 12 3.1e-08 2.4e-05 24.5 1.2 1 25 505 529 505 530 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF710-201 - 664 7.3e-46 152.6 87.6 10 12 3.4e-09 2.7e-06 27.6 1.3 2 25 534 557 533 558 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF710-201 - 664 7.3e-46 152.6 87.6 11 12 7e-07 0.00055 20.3 1.5 2 25 562 585 561 585 0.90 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF710-201 - 664 7.3e-46 152.6 87.6 12 12 0.031 24 5.6 0.2 1 10 589 598 589 602 0.79 Zinc-finger double domain zf-C2H2_4 PF13894.6 24 ZNF710-201 - 664 6.5e-38 126.1 97.7 1 11 2.4e-05 0.019 15.8 0.4 2 23 296 317 295 318 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF710-201 - 664 6.5e-38 126.1 97.7 2 11 2.9e-05 0.022 15.5 5.7 1 23 323 345 323 346 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF710-201 - 664 6.5e-38 126.1 97.7 3 11 0.00025 0.19 12.6 6.6 1 23 351 373 351 374 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF710-201 - 664 6.5e-38 126.1 97.7 4 11 2.7e-05 0.021 15.6 0.8 1 23 379 401 379 402 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF710-201 - 664 6.5e-38 126.1 97.7 5 11 2.2e-05 0.017 15.9 0.7 1 23 407 429 407 430 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF710-201 - 664 6.5e-38 126.1 97.7 6 11 8.5e-06 0.0066 17.2 2.8 1 23 435 457 435 458 0.97 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF710-201 - 664 6.5e-38 126.1 97.7 7 11 0.00011 0.085 13.7 3.1 1 23 463 485 463 486 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF710-201 - 664 6.5e-38 126.1 97.7 8 11 3.4e-06 0.0026 18.4 0.3 1 23 491 513 491 514 0.91 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF710-201 - 664 6.5e-38 126.1 97.7 9 11 2.1e-06 0.0016 19.1 2.6 1 23 519 541 519 542 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF710-201 - 664 6.5e-38 126.1 97.7 10 11 2.3e-06 0.0018 19.0 1.5 1 23 547 569 547 570 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF710-201 - 664 6.5e-38 126.1 97.7 11 11 2.1e-06 0.0017 19.1 1.9 1 24 575 598 575 598 0.95 C2H2-type zinc finger zf-C2H2_jaz PF12171.8 27 ZNF710-201 - 664 2e-10 40.6 67.3 1 11 0.0047 3.7 8.0 0.4 4 24 297 317 295 318 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF710-201 - 664 2e-10 40.6 67.3 2 11 0.00013 0.098 13.0 0.9 2 25 323 346 322 346 0.91 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF710-201 - 664 2e-10 40.6 67.3 3 11 0.051 40 4.6 1.2 2 21 351 370 350 371 0.85 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF710-201 - 664 2e-10 40.6 67.3 4 11 0.057 44 4.5 0.1 2 21 379 398 378 401 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF710-201 - 664 2e-10 40.6 67.3 5 11 0.00039 0.31 11.4 0.5 2 25 407 430 406 430 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF710-201 - 664 2e-10 40.6 67.3 6 11 0.00087 0.68 10.3 3.3 4 21 437 454 435 458 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF710-201 - 664 2e-10 40.6 67.3 7 11 0.2 1.5e+02 2.8 0.9 2 20 463 481 462 486 0.89 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF710-201 - 664 2e-10 40.6 67.3 8 11 0.0052 4.1 7.8 0.1 2 21 491 510 490 511 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF710-201 - 664 2e-10 40.6 67.3 9 11 0.13 1.1e+02 3.3 1.1 4 21 521 538 518 539 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF710-201 - 664 2e-10 40.6 67.3 10 11 5.4e-05 0.042 14.1 0.1 2 21 547 566 546 567 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF710-201 - 664 2e-10 40.6 67.3 11 11 0.16 1.3e+02 3.0 0.2 2 21 575 594 574 595 0.75 Zinc-finger double-stranded RNA-binding # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF710-201.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF710-201.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF710-201.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF710-201.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF710-201.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:13:10 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-C2H2 PF00096.26 23 ZNF710-202 - 381 4.4e-49 162.3 103.6 1 11 3.4e-05 0.025 15.0 0.1 6 23 2 19 1 19 0.95 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF710-202 - 381 4.4e-49 162.3 103.6 2 11 1.3e-06 0.00094 19.5 6.6 1 23 25 47 25 47 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF710-202 - 381 4.4e-49 162.3 103.6 3 11 3.3e-07 0.00024 21.4 7.5 1 23 53 75 53 75 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF710-202 - 381 4.4e-49 162.3 103.6 4 11 9.1e-07 0.00068 20.0 0.8 1 23 81 103 81 103 0.95 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF710-202 - 381 4.4e-49 162.3 103.6 5 11 6e-06 0.0045 17.4 2.3 1 23 109 131 107 131 0.94 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF710-202 - 381 4.4e-49 162.3 103.6 6 11 2.1e-07 0.00016 21.9 3.7 1 23 137 159 137 159 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF710-202 - 381 4.4e-49 162.3 103.6 7 11 7.2e-06 0.0054 17.1 2.8 1 23 165 187 165 187 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF710-202 - 381 4.4e-49 162.3 103.6 8 11 1.2e-07 8.7e-05 22.8 0.3 1 23 193 215 193 215 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF710-202 - 381 4.4e-49 162.3 103.6 9 11 3e-07 0.00023 21.5 3.1 1 23 221 243 221 243 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF710-202 - 381 4.4e-49 162.3 103.6 10 11 1.1e-07 8.4e-05 22.8 2.8 1 23 249 271 249 271 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF710-202 - 381 4.4e-49 162.3 103.6 11 11 1.3e-06 0.001 19.4 2.1 1 23 277 300 277 300 0.98 Zinc finger, C2H2 type zf-H2C2_2 PF13465.6 26 ZNF710-202 - 381 2.7e-48 160.3 84.0 1 11 1.5e-07 0.00011 22.4 1.2 1 26 11 36 11 36 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF710-202 - 381 2.7e-48 160.3 84.0 2 11 2.7e-07 0.0002 21.6 4.0 1 25 39 63 39 64 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF710-202 - 381 2.7e-48 160.3 84.0 3 11 4.7e-07 0.00035 20.9 3.1 1 25 67 91 67 92 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF710-202 - 381 2.7e-48 160.3 84.0 4 11 1 7.7e+02 0.8 1.0 2 25 96 119 95 120 0.81 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF710-202 - 381 2.7e-48 160.3 84.0 5 11 1.1e-08 8e-06 26.0 1.0 2 24 124 146 123 148 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF710-202 - 381 2.7e-48 160.3 84.0 6 11 1.9e-06 0.0015 18.9 0.1 2 25 152 175 151 176 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF710-202 - 381 2.7e-48 160.3 84.0 7 11 1.1e-06 0.00079 19.7 2.1 1 25 179 203 179 203 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF710-202 - 381 2.7e-48 160.3 84.0 8 11 1.7e-08 1.2e-05 25.5 1.2 1 25 207 231 207 232 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF710-202 - 381 2.7e-48 160.3 84.0 9 11 1.8e-09 1.4e-06 28.5 1.3 2 25 236 259 235 260 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF710-202 - 381 2.7e-48 160.3 84.0 10 11 3.8e-07 0.00028 21.2 1.5 2 25 264 287 263 287 0.90 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF710-202 - 381 2.7e-48 160.3 84.0 11 11 0.017 13 6.4 0.2 1 10 291 300 291 304 0.79 Zinc-finger double domain zf-C2H2_4 PF13894.6 24 ZNF710-202 - 381 2.5e-39 130.5 95.4 1 11 0.0027 2 9.5 0.1 6 23 2 19 1 20 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF710-202 - 381 2.5e-39 130.5 95.4 2 11 1.5e-05 0.011 16.5 5.7 1 23 25 47 25 48 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF710-202 - 381 2.5e-39 130.5 95.4 3 11 0.00013 0.099 13.5 6.6 1 23 53 75 53 76 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF710-202 - 381 2.5e-39 130.5 95.4 4 11 1.5e-05 0.011 16.5 0.8 1 23 81 103 81 104 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF710-202 - 381 2.5e-39 130.5 95.4 5 11 1.2e-05 0.0088 16.8 0.7 1 23 109 131 109 132 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF710-202 - 381 2.5e-39 130.5 95.4 6 11 4.5e-06 0.0034 18.1 2.8 1 23 137 159 137 160 0.97 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF710-202 - 381 2.5e-39 130.5 95.4 7 11 5.8e-05 0.043 14.7 3.1 1 23 165 187 165 188 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF710-202 - 381 2.5e-39 130.5 95.4 8 11 1.8e-06 0.0013 19.4 0.3 1 23 193 215 193 216 0.91 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF710-202 - 381 2.5e-39 130.5 95.4 9 11 1.1e-06 0.00082 20.0 2.6 1 23 221 243 221 244 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF710-202 - 381 2.5e-39 130.5 95.4 10 11 1.2e-06 0.0009 19.9 1.5 1 23 249 271 249 272 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF710-202 - 381 2.5e-39 130.5 95.4 11 11 1.1e-06 0.00085 20.0 1.9 1 24 277 300 277 300 0.95 C2H2-type zinc finger zf-C2H2_jaz PF12171.8 27 ZNF710-202 - 381 1.4e-13 50.7 63.8 1 11 0.015 11 6.4 0.0 7 24 2 19 1 21 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF710-202 - 381 1.4e-13 50.7 63.8 2 11 6.7e-05 0.05 13.9 0.9 2 25 25 48 24 48 0.91 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF710-202 - 381 1.4e-13 50.7 63.8 3 11 0.028 21 5.5 1.2 2 21 53 72 52 73 0.86 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF710-202 - 381 1.4e-13 50.7 63.8 4 11 0.031 23 5.4 0.1 2 21 81 100 80 103 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF710-202 - 381 1.4e-13 50.7 63.8 5 11 0.00021 0.16 12.3 0.5 2 25 109 132 108 132 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF710-202 - 381 1.4e-13 50.7 63.8 6 11 0.00048 0.35 11.2 3.3 4 21 139 156 137 160 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF710-202 - 381 1.4e-13 50.7 63.8 7 11 0.11 80 3.7 0.9 2 20 165 183 164 188 0.89 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF710-202 - 381 1.4e-13 50.7 63.8 8 11 0.0028 2.1 8.7 0.1 2 21 193 212 192 213 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF710-202 - 381 1.4e-13 50.7 63.8 9 11 0.074 55 4.2 1.1 4 21 223 240 220 241 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF710-202 - 381 1.4e-13 50.7 63.8 10 11 2.9e-05 0.022 15.1 0.1 2 21 249 268 248 269 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF710-202 - 381 1.4e-13 50.7 63.8 11 11 0.09 67 3.9 0.2 2 21 277 296 276 297 0.75 Zinc-finger double-stranded RNA-binding zf-C2H2_6 PF13912.6 27 ZNF710-202 - 381 4.7e-08 32.8 87.1 1 11 0.13 94 3.2 0.1 7 20 2 15 1 15 0.95 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF710-202 - 381 4.7e-08 32.8 87.1 2 11 0.37 2.7e+02 1.7 2.9 2 20 25 43 25 49 0.72 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF710-202 - 381 4.7e-08 32.8 87.1 3 11 0.032 24 5.1 6.6 2 12 53 63 53 72 0.90 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF710-202 - 381 4.7e-08 32.8 87.1 4 11 0.58 4.3e+02 1.1 1.4 2 21 81 100 81 105 0.77 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF710-202 - 381 4.7e-08 32.8 87.1 5 11 6.4e-05 0.048 13.7 1.2 2 25 109 132 108 134 0.95 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF710-202 - 381 4.7e-08 32.8 87.1 6 11 0.0054 4 7.5 2.2 2 21 137 156 136 160 0.80 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF710-202 - 381 4.7e-08 32.8 87.1 7 11 0.034 26 5.0 2.3 2 25 165 188 165 190 0.82 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF710-202 - 381 4.7e-08 32.8 87.1 8 11 0.004 3 8.0 0.2 2 21 193 212 192 215 0.81 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF710-202 - 381 4.7e-08 32.8 87.1 9 11 0.0012 0.9 9.6 0.7 2 24 221 243 221 246 0.92 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF710-202 - 381 4.7e-08 32.8 87.1 10 11 8.2e-08 6.1e-05 22.9 2.0 2 21 249 268 249 272 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF710-202 - 381 4.7e-08 32.8 87.1 11 11 0.069 52 4.0 0.8 2 12 277 287 277 301 0.78 C2H2-type zinc finger # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF710-202.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF710-202.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF710-202.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF710-202.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF710-202.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:13:11 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZNF710-203 - 96 2e-08 34.3 5.6 1 2 0.00014 0.085 13.3 0.1 6 25 1 20 1 21 0.89 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF710-203 - 96 2e-08 34.3 5.6 2 2 1.7e-07 0.0001 22.5 2.1 1 25 24 48 24 48 0.95 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZNF710-203 - 96 1.8e-07 31.2 7.2 1 2 1.2e-06 0.00072 19.9 2.8 1 23 10 32 10 32 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF710-203 - 96 1.8e-07 31.2 7.2 2 2 0.00014 0.083 13.4 0.1 1 18 38 55 38 55 0.91 Zinc finger, C2H2 type # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF710-203.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF710-203.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF710-203.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF710-203.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF710-203.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:13:11 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF710-204.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF710-204.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF710-204.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF710-204.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF710-204.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:13:12 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF710-205.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF710-205.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF710-205.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF710-205.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF710-205.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:13:12 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZNF71-201 - 489 3.9e-106 343.2 80.4 1 14 0.0032 1.6 9.3 0.8 12 25 127 140 125 141 0.84 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF71-201 - 489 3.9e-106 343.2 80.4 2 14 1.7e-10 8.5e-08 32.3 0.8 2 24 145 167 144 168 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF71-201 - 489 3.9e-106 343.2 80.4 3 14 6.3e-10 3.1e-07 30.5 0.1 2 25 173 196 172 197 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF71-201 - 489 3.9e-106 343.2 80.4 4 14 2.2e-11 1.1e-08 35.1 0.3 1 25 200 224 200 225 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF71-201 - 489 3.9e-106 343.2 80.4 5 14 2.5e-10 1.2e-07 31.8 0.1 1 25 228 252 228 253 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF71-201 - 489 3.9e-106 343.2 80.4 6 14 1e-10 5.1e-08 33.0 0.4 2 25 257 280 256 281 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF71-201 - 489 3.9e-106 343.2 80.4 7 14 5e-11 2.5e-08 34.0 2.6 1 25 284 308 284 309 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF71-201 - 489 3.9e-106 343.2 80.4 8 14 2e-10 1e-07 32.1 0.1 2 25 313 336 312 337 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF71-201 - 489 3.9e-106 343.2 80.4 9 14 8.7e-10 4.3e-07 30.1 0.3 2 25 341 364 340 365 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF71-201 - 489 3.9e-106 343.2 80.4 10 14 5.2e-10 2.6e-07 30.8 2.5 1 25 368 392 368 392 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF71-201 - 489 3.9e-106 343.2 80.4 11 14 3.8e-09 1.9e-06 28.0 0.0 2 25 397 420 396 421 0.90 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF71-201 - 489 3.9e-106 343.2 80.4 12 14 1.5e-09 7.2e-07 29.4 0.3 2 24 425 447 424 449 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF71-201 - 489 3.9e-106 343.2 80.4 13 14 1.6e-10 8e-08 32.4 0.4 2 25 453 476 452 477 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF71-201 - 489 3.9e-106 343.2 80.4 14 14 0.054 27 5.4 1.0 1 10 480 489 480 489 0.96 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZNF71-201 - 489 3.4e-86 279.2 84.7 1 14 6.9 3.4e+03 -1.2 0.1 7 17 108 118 108 119 0.87 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF71-201 - 489 3.4e-86 279.2 84.7 2 14 2.3e-09 1.1e-06 28.7 0.5 1 23 130 152 130 152 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF71-201 - 489 3.4e-86 279.2 84.7 3 14 5.1e-07 0.00025 21.3 1.2 1 23 158 180 158 180 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF71-201 - 489 3.4e-86 279.2 84.7 4 14 2.7e-09 1.4e-06 28.5 0.3 1 23 186 208 186 208 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF71-201 - 489 3.4e-86 279.2 84.7 5 14 8.2e-08 4.1e-05 23.8 0.4 1 23 214 236 214 236 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF71-201 - 489 3.4e-86 279.2 84.7 6 14 5.9e-09 2.9e-06 27.4 0.5 1 23 242 264 242 264 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF71-201 - 489 3.4e-86 279.2 84.7 7 14 5.9e-09 2.9e-06 27.4 1.0 1 23 270 292 270 292 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF71-201 - 489 3.4e-86 279.2 84.7 8 14 4.8e-08 2.4e-05 24.5 0.7 1 23 298 320 298 320 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF71-201 - 489 3.4e-86 279.2 84.7 9 14 1.7e-08 8.6e-06 25.9 0.4 1 23 326 348 326 348 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF71-201 - 489 3.4e-86 279.2 84.7 10 14 1.1e-08 5.2e-06 26.6 0.6 1 23 354 376 354 376 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF71-201 - 489 3.4e-86 279.2 84.7 11 14 4.7e-06 0.0023 18.3 1.1 1 23 382 404 382 404 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF71-201 - 489 3.4e-86 279.2 84.7 12 14 4.1e-08 2e-05 24.8 0.0 1 23 410 432 410 432 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF71-201 - 489 3.4e-86 279.2 84.7 13 14 4.6e-09 2.3e-06 27.8 0.6 1 23 438 460 438 460 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF71-201 - 489 3.4e-86 279.2 84.7 14 14 3.5e-10 1.8e-07 31.3 1.1 1 23 466 488 466 488 0.99 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZNF71-201 - 489 4.8e-42 139.0 80.8 1 13 2.7e-05 0.013 16.2 0.5 3 23 132 152 130 153 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF71-201 - 489 4.8e-42 139.0 80.8 2 13 0.0018 0.91 10.5 0.9 1 23 158 180 158 181 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF71-201 - 489 4.8e-42 139.0 80.8 3 13 6.5e-05 0.032 15.0 0.2 1 23 186 208 186 209 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF71-201 - 489 4.8e-42 139.0 80.8 4 13 5.9e-05 0.029 15.2 0.4 1 23 214 236 214 237 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF71-201 - 489 4.8e-42 139.0 80.8 5 13 4.8e-05 0.024 15.4 0.4 1 23 242 264 242 265 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF71-201 - 489 4.8e-42 139.0 80.8 6 13 1.3e-05 0.0063 17.2 0.8 1 23 270 292 270 293 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF71-201 - 489 4.8e-42 139.0 80.8 7 13 0.00016 0.079 13.8 0.7 1 23 298 320 298 321 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF71-201 - 489 4.8e-42 139.0 80.8 8 13 0.00011 0.054 14.4 0.3 1 23 326 348 326 349 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF71-201 - 489 4.8e-42 139.0 80.8 9 13 1.8e-05 0.0089 16.8 0.6 1 23 354 376 354 377 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF71-201 - 489 4.8e-42 139.0 80.8 10 13 0.00047 0.23 12.4 1.0 1 23 382 404 382 405 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF71-201 - 489 4.8e-42 139.0 80.8 11 13 0.00041 0.21 12.5 0.1 1 23 410 432 410 433 0.89 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF71-201 - 489 4.8e-42 139.0 80.8 12 13 7.7e-05 0.039 14.8 0.5 1 23 438 460 438 461 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF71-201 - 489 4.8e-42 139.0 80.8 13 13 1.7e-06 0.00085 20.0 0.5 1 23 466 488 466 489 0.95 C2H2-type zinc finger zf-C2H2_jaz PF12171.8 27 ZNF71-201 - 489 1.4e-25 88.9 33.1 1 13 0.003 1.5 9.2 0.1 2 22 130 150 129 150 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF71-201 - 489 1.4e-25 88.9 33.1 2 13 0.00026 0.13 12.6 0.1 2 22 158 178 157 178 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF71-201 - 489 1.4e-25 88.9 33.1 3 13 0.41 2e+02 2.4 0.0 2 24 186 208 185 208 0.89 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF71-201 - 489 1.4e-25 88.9 33.1 4 13 0.0023 1.2 9.6 0.0 2 22 214 234 213 234 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF71-201 - 489 1.4e-25 88.9 33.1 5 13 1.3 6.6e+02 0.8 0.1 2 24 242 264 241 264 0.87 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF71-201 - 489 1.4e-25 88.9 33.1 6 13 0.025 12 6.3 0.1 2 24 270 292 269 292 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF71-201 - 489 1.4e-25 88.9 33.1 7 13 0.00038 0.19 12.1 0.4 2 22 298 318 297 320 0.91 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF71-201 - 489 1.4e-25 88.9 33.1 8 13 0.18 88 3.6 0.0 2 22 326 346 325 346 0.90 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF71-201 - 489 1.4e-25 88.9 33.1 9 13 0.00014 0.07 13.4 0.1 2 22 354 374 353 374 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF71-201 - 489 1.4e-25 88.9 33.1 10 13 0.00067 0.33 11.3 0.2 2 21 382 401 381 402 0.91 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF71-201 - 489 1.4e-25 88.9 33.1 11 13 0.64 3.2e+02 1.8 0.0 2 21 410 429 409 430 0.84 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF71-201 - 489 1.4e-25 88.9 33.1 12 13 0.0047 2.3 8.6 0.0 2 22 438 458 437 458 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF71-201 - 489 1.4e-25 88.9 33.1 13 13 0.0011 0.57 10.5 0.0 2 22 466 486 465 486 0.93 Zinc-finger double-stranded RNA-binding zf_UBZ PF18439.1 32 ZNF71-201 - 489 9e-20 70.0 44.9 1 13 0.00078 0.39 10.4 0.1 2 20 129 148 128 149 0.80 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF71-201 - 489 9e-20 70.0 44.9 2 13 0.014 6.7 6.4 0.2 3 15 158 170 156 177 0.79 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF71-201 - 489 9e-20 70.0 44.9 3 13 0.041 20 4.9 0.0 3 15 186 198 184 205 0.80 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF71-201 - 489 9e-20 70.0 44.9 4 13 0.011 5.5 6.7 0.1 3 21 214 233 212 233 0.90 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF71-201 - 489 9e-20 70.0 44.9 5 13 0.036 18 5.0 0.0 3 15 242 254 240 260 0.87 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF71-201 - 489 9e-20 70.0 44.9 6 13 0.00012 0.062 12.9 0.3 3 21 270 289 268 289 0.94 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF71-201 - 489 9e-20 70.0 44.9 7 13 0.013 6.7 6.4 0.1 3 15 298 310 296 317 0.78 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF71-201 - 489 9e-20 70.0 44.9 8 13 0.0014 0.71 9.5 0.1 3 24 326 348 324 349 0.85 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF71-201 - 489 9e-20 70.0 44.9 9 13 0.00088 0.44 10.2 0.2 3 21 354 373 352 373 0.91 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF71-201 - 489 9e-20 70.0 44.9 10 13 1.4 7.2e+02 -0.1 0.3 3 12 382 391 380 395 0.87 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF71-201 - 489 9e-20 70.0 44.9 11 13 0.00093 0.46 10.1 0.1 3 21 410 429 408 429 0.90 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF71-201 - 489 9e-20 70.0 44.9 12 13 0.025 12 5.6 0.1 3 16 438 452 436 457 0.77 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF71-201 - 489 9e-20 70.0 44.9 13 13 0.012 6.1 6.5 0.0 3 16 466 480 464 485 0.78 Ubiquitin-Binding Zinc Finger Zn-ribbon_8 PF09723.10 40 ZNF71-201 - 489 9.3e-18 64.1 54.3 1 9 0.0002 0.1 12.8 2.5 6 34 130 165 129 172 0.89 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF71-201 - 489 9.3e-18 64.1 54.3 2 9 2e-05 0.01 15.9 1.2 6 38 186 225 185 227 0.92 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF71-201 - 489 9.3e-18 64.1 54.3 3 9 1.2e-06 0.00058 19.9 1.0 6 35 242 278 241 283 0.89 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF71-201 - 489 9.3e-18 64.1 54.3 4 9 0.00012 0.06 13.5 2.4 6 35 298 334 297 338 0.84 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF71-201 - 489 9.3e-18 64.1 54.3 5 9 0.037 18 5.5 0.2 6 16 326 336 324 348 0.85 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF71-201 - 489 9.3e-18 64.1 54.3 6 9 0.006 3 8.1 3.1 6 34 354 389 351 394 0.88 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF71-201 - 489 9.3e-18 64.1 54.3 7 9 0.014 6.9 6.9 2.4 6 35 382 418 381 423 0.81 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF71-201 - 489 9.3e-18 64.1 54.3 8 9 0.0001 0.051 13.7 1.9 6 34 410 445 408 450 0.93 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF71-201 - 489 9.3e-18 64.1 54.3 9 9 1.8e-05 0.0087 16.2 2.3 6 38 438 477 436 479 0.93 Zinc ribbon domain zf-C2H2_6 PF13912.6 27 ZNF71-201 - 489 4.7e-17 61.5 77.8 1 13 4.1e-05 0.021 14.8 0.4 2 24 130 152 129 155 0.90 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF71-201 - 489 4.7e-17 61.5 77.8 2 13 0.012 5.9 7.0 0.9 2 11 158 167 158 168 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF71-201 - 489 4.7e-17 61.5 77.8 3 13 0.3 1.5e+02 2.5 0.3 2 24 186 208 186 211 0.86 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF71-201 - 489 4.7e-17 61.5 77.8 4 13 4.9e-05 0.024 14.6 0.3 2 22 214 234 214 238 0.90 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF71-201 - 489 4.7e-17 61.5 77.8 5 13 2.1 1e+03 -0.2 0.3 2 13 242 253 242 266 0.68 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF71-201 - 489 4.7e-17 61.5 77.8 6 13 0.0019 0.93 9.6 0.6 2 24 270 292 270 295 0.91 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF71-201 - 489 4.7e-17 61.5 77.8 7 13 0.00012 0.058 13.4 1.5 2 24 298 320 298 323 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF71-201 - 489 4.7e-17 61.5 77.8 8 13 0.062 31 4.7 0.2 2 12 326 336 326 344 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF71-201 - 489 4.7e-17 61.5 77.8 9 13 6.1e-05 0.03 14.3 1.0 2 24 354 376 354 379 0.89 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF71-201 - 489 4.7e-17 61.5 77.8 10 13 0.1 51 4.0 0.5 2 11 382 391 382 400 0.92 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF71-201 - 489 4.7e-17 61.5 77.8 11 13 0.042 21 5.3 0.2 2 12 410 420 410 433 0.82 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF71-201 - 489 4.7e-17 61.5 77.8 12 13 0.017 8.2 6.6 0.3 2 11 438 447 438 461 0.80 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF71-201 - 489 4.7e-17 61.5 77.8 13 13 3.4e-05 0.017 15.1 0.5 2 24 466 488 466 489 0.94 C2H2-type zinc finger DZR PF12773.7 49 ZNF71-201 - 489 9.1e-09 35.2 49.5 1 3 0.063 31 4.7 10.2 1 49 132 220 124 232 0.71 Double zinc ribbon DZR PF12773.7 49 ZNF71-201 - 489 9.1e-09 35.2 49.5 2 3 2.8 1.4e+03 -0.6 20.4 15 49 244 304 204 372 0.62 Double zinc ribbon DZR PF12773.7 49 ZNF71-201 - 489 9.1e-09 35.2 49.5 3 3 0.048 24 5.1 12.4 13 49 410 472 347 483 0.74 Double zinc ribbon zinc_ribbon_15 PF17032.5 86 ZNF71-201 - 489 9.5e-09 35.9 42.7 1 7 0.0029 1.5 9.7 2.5 30 76 123 168 118 176 0.86 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF71-201 - 489 9.5e-09 35.9 42.7 2 7 0.0051 2.6 8.9 0.5 32 77 180 225 174 232 0.85 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF71-201 - 489 9.5e-09 35.9 42.7 3 7 0.00046 0.23 12.2 0.3 32 79 236 283 229 288 0.87 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF71-201 - 489 9.5e-09 35.9 42.7 4 7 0.00054 0.27 12.0 1.3 34 78 294 338 286 341 0.86 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF71-201 - 489 9.5e-09 35.9 42.7 5 7 0.094 47 4.8 4.8 36 76 352 392 338 422 0.84 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF71-201 - 489 9.5e-09 35.9 42.7 6 7 0.0024 1.2 9.9 0.4 35 77 407 449 395 453 0.80 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF71-201 - 489 9.5e-09 35.9 42.7 7 7 0.008 4 8.3 2.7 24 78 424 478 410 483 0.76 zinc-ribbon family Zn_ribbon_recom PF13408.6 58 ZNF71-201 - 489 4.7e-08 33.4 52.7 1 10 0.096 48 4.6 0.2 8 21 132 145 131 184 0.65 Recombinase zinc beta ribbon domain Zn_ribbon_recom PF13408.6 58 ZNF71-201 - 489 4.7e-08 33.4 52.7 2 10 0.0019 0.96 10.0 1.9 8 42 188 232 186 239 0.64 Recombinase zinc beta ribbon domain Zn_ribbon_recom PF13408.6 58 ZNF71-201 - 489 4.7e-08 33.4 52.7 3 10 0.011 5.7 7.5 0.5 8 26 244 270 242 272 0.65 Recombinase zinc beta ribbon domain Zn_ribbon_recom PF13408.6 58 ZNF71-201 - 489 4.7e-08 33.4 52.7 4 10 0.017 8.4 7.0 1.7 7 30 271 301 270 312 0.64 Recombinase zinc beta ribbon domain Zn_ribbon_recom PF13408.6 58 ZNF71-201 - 489 4.7e-08 33.4 52.7 5 10 0.24 1.2e+02 3.3 1.7 8 29 300 328 298 329 0.60 Recombinase zinc beta ribbon domain Zn_ribbon_recom PF13408.6 58 ZNF71-201 - 489 4.7e-08 33.4 52.7 6 10 0.056 28 5.3 0.3 7 18 327 338 326 346 0.83 Recombinase zinc beta ribbon domain Zn_ribbon_recom PF13408.6 58 ZNF71-201 - 489 4.7e-08 33.4 52.7 7 10 0.0004 0.2 12.2 0.8 8 36 356 394 354 404 0.68 Recombinase zinc beta ribbon domain Zn_ribbon_recom PF13408.6 58 ZNF71-201 - 489 4.7e-08 33.4 52.7 8 10 0.11 55 4.4 4.6 7 31 411 442 410 446 0.62 Recombinase zinc beta ribbon domain Zn_ribbon_recom PF13408.6 58 ZNF71-201 - 489 4.7e-08 33.4 52.7 9 10 0.11 54 4.4 0.6 7 18 439 450 438 466 0.67 Recombinase zinc beta ribbon domain Zn_ribbon_recom PF13408.6 58 ZNF71-201 - 489 4.7e-08 33.4 52.7 10 10 0.0094 4.7 7.8 0.6 7 20 467 480 465 487 0.86 Recombinase zinc beta ribbon domain XPA_N PF01286.18 32 ZNF71-201 - 489 8.9e-08 32.0 48.3 1 13 0.014 7.2 6.8 0.3 3 14 131 142 130 146 0.91 XPA protein N-terminal XPA_N PF01286.18 32 ZNF71-201 - 489 8.9e-08 32.0 48.3 2 13 0.19 95 3.2 0.4 3 11 159 167 157 170 0.88 XPA protein N-terminal XPA_N PF01286.18 32 ZNF71-201 - 489 8.9e-08 32.0 48.3 3 13 0.48 2.4e+02 1.9 0.1 4 12 188 196 186 197 0.88 XPA protein N-terminal XPA_N PF01286.18 32 ZNF71-201 - 489 8.9e-08 32.0 48.3 4 13 0.15 73 3.5 0.0 3 11 215 223 213 231 0.77 XPA protein N-terminal XPA_N PF01286.18 32 ZNF71-201 - 489 8.9e-08 32.0 48.3 5 13 0.44 2.2e+02 2.0 0.1 4 12 244 252 242 254 0.88 XPA protein N-terminal XPA_N PF01286.18 32 ZNF71-201 - 489 8.9e-08 32.0 48.3 6 13 0.24 1.2e+02 2.9 0.0 3 12 271 280 269 284 0.88 XPA protein N-terminal XPA_N PF01286.18 32 ZNF71-201 - 489 8.9e-08 32.0 48.3 7 13 0.0077 3.8 7.6 0.2 4 14 300 310 297 313 0.91 XPA protein N-terminal XPA_N PF01286.18 32 ZNF71-201 - 489 8.9e-08 32.0 48.3 8 13 0.0017 0.86 9.7 0.1 3 17 327 341 325 347 0.81 XPA protein N-terminal XPA_N PF01286.18 32 ZNF71-201 - 489 8.9e-08 32.0 48.3 9 13 0.027 13 5.9 0.3 3 12 355 364 353 372 0.85 XPA protein N-terminal XPA_N PF01286.18 32 ZNF71-201 - 489 8.9e-08 32.0 48.3 10 13 9.1 4.5e+03 -2.2 0.1 3 11 383 391 382 393 0.78 XPA protein N-terminal XPA_N PF01286.18 32 ZNF71-201 - 489 8.9e-08 32.0 48.3 11 13 0.0022 1.1 9.4 0.0 3 17 411 425 409 428 0.86 XPA protein N-terminal XPA_N PF01286.18 32 ZNF71-201 - 489 8.9e-08 32.0 48.3 12 13 0.61 3.1e+02 1.5 0.1 3 12 439 448 437 452 0.88 XPA protein N-terminal XPA_N PF01286.18 32 ZNF71-201 - 489 8.9e-08 32.0 48.3 13 13 0.085 42 4.3 0.1 3 12 467 476 465 477 0.88 XPA protein N-terminal DUF3268 PF11672.8 118 ZNF71-201 - 489 5.9e-07 29.8 36.4 1 9 0.1 51 4.2 0.2 3 39 130 166 128 183 0.73 zinc-finger-containing domain DUF3268 PF11672.8 118 ZNF71-201 - 489 5.9e-07 29.8 36.4 2 9 0.00021 0.1 12.9 0.5 3 38 158 193 156 208 0.88 zinc-finger-containing domain DUF3268 PF11672.8 118 ZNF71-201 - 489 5.9e-07 29.8 36.4 3 9 0.0015 0.73 10.2 1.0 3 39 186 222 184 234 0.88 zinc-finger-containing domain DUF3268 PF11672.8 118 ZNF71-201 - 489 5.9e-07 29.8 36.4 4 9 0.031 15 5.9 1.0 2 37 213 248 212 252 0.81 zinc-finger-containing domain DUF3268 PF11672.8 118 ZNF71-201 - 489 5.9e-07 29.8 36.4 5 9 0.002 0.99 9.8 0.7 3 38 242 277 239 291 0.83 zinc-finger-containing domain DUF3268 PF11672.8 118 ZNF71-201 - 489 5.9e-07 29.8 36.4 6 9 0.00039 0.2 12.0 0.5 2 38 297 333 296 351 0.91 zinc-finger-containing domain DUF3268 PF11672.8 118 ZNF71-201 - 489 5.9e-07 29.8 36.4 7 9 0.66 3.3e+02 1.6 0.7 3 38 354 389 352 395 0.74 zinc-finger-containing domain DUF3268 PF11672.8 118 ZNF71-201 - 489 5.9e-07 29.8 36.4 8 9 0.11 55 4.1 1.4 3 37 382 416 380 422 0.89 zinc-finger-containing domain DUF3268 PF11672.8 118 ZNF71-201 - 489 5.9e-07 29.8 36.4 9 9 0.0012 0.61 10.4 0.5 2 38 437 473 436 483 0.89 zinc-finger-containing domain # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF71-201.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF71-201.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF71-201.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF71-201.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF71-201.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:13:12 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF71-202.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF71-202.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF71-202.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF71-202.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF71-202.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:13:13 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZNF71-203 - 549 2.7e-105 340.5 80.4 1 14 0.0034 1.8 9.1 0.8 12 25 187 200 185 201 0.84 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF71-203 - 549 2.7e-105 340.5 80.4 2 14 1.8e-10 9.7e-08 32.1 0.8 2 24 205 227 204 228 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF71-203 - 549 2.7e-105 340.5 80.4 3 14 6.8e-10 3.6e-07 30.3 0.1 2 25 233 256 232 257 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF71-203 - 549 2.7e-105 340.5 80.4 4 14 2.4e-11 1.3e-08 34.9 0.3 1 25 260 284 260 285 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF71-203 - 549 2.7e-105 340.5 80.4 5 14 2.7e-10 1.4e-07 31.6 0.1 1 25 288 312 288 313 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF71-203 - 549 2.7e-105 340.5 80.4 6 14 1.1e-10 5.8e-08 32.8 0.4 2 25 317 340 316 341 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF71-203 - 549 2.7e-105 340.5 80.4 7 14 5.5e-11 2.9e-08 33.8 2.6 1 25 344 368 344 369 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF71-203 - 549 2.7e-105 340.5 80.4 8 14 2.2e-10 1.2e-07 31.9 0.1 2 25 373 396 372 397 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF71-203 - 549 2.7e-105 340.5 80.4 9 14 9.5e-10 5e-07 29.9 0.3 2 25 401 424 400 425 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF71-203 - 549 2.7e-105 340.5 80.4 10 14 5.7e-10 3e-07 30.6 2.5 1 25 428 452 428 452 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF71-203 - 549 2.7e-105 340.5 80.4 11 14 4.1e-09 2.2e-06 27.8 0.0 2 25 457 480 456 481 0.90 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF71-203 - 549 2.7e-105 340.5 80.4 12 14 1.6e-09 8.3e-07 29.2 0.3 2 24 485 507 484 509 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF71-203 - 549 2.7e-105 340.5 80.4 13 14 1.7e-10 9.1e-08 32.2 0.4 2 25 513 536 512 537 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF71-203 - 549 2.7e-105 340.5 80.4 14 14 0.058 31 5.2 1.0 1 10 540 549 540 549 0.96 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZNF71-203 - 549 2.1e-85 276.7 84.7 1 14 7.4 3.9e+03 -1.3 0.1 7 17 168 178 168 179 0.87 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF71-203 - 549 2.1e-85 276.7 84.7 2 14 2.5e-09 1.3e-06 28.5 0.5 1 23 190 212 190 212 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF71-203 - 549 2.1e-85 276.7 84.7 3 14 5.5e-07 0.00029 21.1 1.2 1 23 218 240 218 240 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF71-203 - 549 2.1e-85 276.7 84.7 4 14 2.9e-09 1.6e-06 28.3 0.3 1 23 246 268 246 268 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF71-203 - 549 2.1e-85 276.7 84.7 5 14 8.9e-08 4.7e-05 23.6 0.4 1 23 274 296 274 296 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF71-203 - 549 2.1e-85 276.7 84.7 6 14 6.4e-09 3.4e-06 27.2 0.5 1 23 302 324 302 324 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF71-203 - 549 2.1e-85 276.7 84.7 7 14 6.4e-09 3.4e-06 27.2 1.0 1 23 330 352 330 352 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF71-203 - 549 2.1e-85 276.7 84.7 8 14 5.2e-08 2.8e-05 24.3 0.7 1 23 358 380 358 380 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF71-203 - 549 2.1e-85 276.7 84.7 9 14 1.9e-08 9.9e-06 25.7 0.4 1 23 386 408 386 408 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF71-203 - 549 2.1e-85 276.7 84.7 10 14 1.1e-08 6e-06 26.4 0.6 1 23 414 436 414 436 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF71-203 - 549 2.1e-85 276.7 84.7 11 14 5.1e-06 0.0027 18.1 1.1 1 23 442 464 442 464 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF71-203 - 549 2.1e-85 276.7 84.7 12 14 4.4e-08 2.3e-05 24.6 0.0 1 23 470 492 470 492 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF71-203 - 549 2.1e-85 276.7 84.7 13 14 4.9e-09 2.6e-06 27.6 0.6 1 23 498 520 498 520 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF71-203 - 549 2.1e-85 276.7 84.7 14 14 3.8e-10 2e-07 31.1 1.1 1 23 526 548 526 548 0.99 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZNF71-203 - 549 3e-41 136.5 80.8 1 13 2.9e-05 0.015 16.0 0.5 3 23 192 212 190 213 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF71-203 - 549 3e-41 136.5 80.8 2 13 0.002 1 10.3 0.9 1 23 218 240 218 241 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF71-203 - 549 3e-41 136.5 80.8 3 13 7.1e-05 0.037 14.9 0.2 1 23 246 268 246 269 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF71-203 - 549 3e-41 136.5 80.8 4 13 6.4e-05 0.034 15.0 0.4 1 23 274 296 274 297 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF71-203 - 549 3e-41 136.5 80.8 5 13 5.3e-05 0.028 15.3 0.4 1 23 302 324 302 325 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF71-203 - 549 3e-41 136.5 80.8 6 13 1.4e-05 0.0073 17.1 0.8 1 23 330 352 330 353 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF71-203 - 549 3e-41 136.5 80.8 7 13 0.00017 0.091 13.7 0.7 1 23 358 380 358 381 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF71-203 - 549 3e-41 136.5 80.8 8 13 0.00012 0.062 14.2 0.3 1 23 386 408 386 409 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF71-203 - 549 3e-41 136.5 80.8 9 13 2e-05 0.01 16.6 0.6 1 23 414 436 414 437 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF71-203 - 549 3e-41 136.5 80.8 10 13 0.00051 0.27 12.2 1.0 1 23 442 464 442 465 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF71-203 - 549 3e-41 136.5 80.8 11 13 0.00045 0.24 12.4 0.1 1 23 470 492 470 493 0.89 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF71-203 - 549 3e-41 136.5 80.8 12 13 8.4e-05 0.044 14.6 0.5 1 23 498 520 498 521 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF71-203 - 549 3e-41 136.5 80.8 13 13 1.8e-06 0.00097 19.8 0.5 1 23 526 548 526 549 0.95 C2H2-type zinc finger KRAB PF01352.27 42 ZNF71-203 - 549 1.4e-27 95.1 0.7 1 1 5.2e-30 2.8e-27 94.1 0.7 1 42 13 54 13 54 0.99 KRAB box zf-C2H2_jaz PF12171.8 27 ZNF71-203 - 549 7.5e-25 86.6 33.1 1 13 0.0033 1.7 9.0 0.1 2 22 190 210 189 210 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF71-203 - 549 7.5e-25 86.6 33.1 2 13 0.00028 0.15 12.4 0.1 2 22 218 238 217 238 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF71-203 - 549 7.5e-25 86.6 33.1 3 13 0.44 2.3e+02 2.2 0.0 2 24 246 268 245 268 0.89 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF71-203 - 549 7.5e-25 86.6 33.1 4 13 0.0025 1.3 9.4 0.0 2 22 274 294 273 294 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF71-203 - 549 7.5e-25 86.6 33.1 5 13 1.4 7.6e+02 0.6 0.1 2 24 302 324 301 324 0.87 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF71-203 - 549 7.5e-25 86.6 33.1 6 13 0.027 14 6.1 0.1 2 24 330 352 329 352 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF71-203 - 549 7.5e-25 86.6 33.1 7 13 0.00041 0.22 11.9 0.4 2 22 358 378 357 380 0.91 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF71-203 - 549 7.5e-25 86.6 33.1 8 13 0.19 1e+02 3.4 0.0 2 22 386 406 385 406 0.90 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF71-203 - 549 7.5e-25 86.6 33.1 9 13 0.00015 0.081 13.2 0.1 2 22 414 434 413 434 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF71-203 - 549 7.5e-25 86.6 33.1 10 13 0.00072 0.38 11.1 0.2 2 21 442 461 441 462 0.91 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF71-203 - 549 7.5e-25 86.6 33.1 11 13 0.69 3.6e+02 1.6 0.0 2 21 470 489 469 490 0.84 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF71-203 - 549 7.5e-25 86.6 33.1 12 13 0.0051 2.7 8.4 0.0 2 22 498 518 497 518 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF71-203 - 549 7.5e-25 86.6 33.1 13 13 0.0012 0.66 10.3 0.0 2 22 526 546 525 546 0.93 Zinc-finger double-stranded RNA-binding zf_UBZ PF18439.1 32 ZNF71-203 - 549 4.6e-19 67.7 44.9 1 13 0.00084 0.45 10.2 0.1 2 20 189 208 188 209 0.80 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF71-203 - 549 4.6e-19 67.7 44.9 2 13 0.015 7.7 6.2 0.2 3 15 218 230 216 237 0.79 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF71-203 - 549 4.6e-19 67.7 44.9 3 13 0.044 23 4.7 0.0 3 15 246 258 244 265 0.80 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF71-203 - 549 4.6e-19 67.7 44.9 4 13 0.012 6.3 6.5 0.1 3 21 274 293 272 293 0.90 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF71-203 - 549 4.6e-19 67.7 44.9 5 13 0.039 20 4.8 0.0 3 15 302 314 300 320 0.87 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF71-203 - 549 4.6e-19 67.7 44.9 6 13 0.00013 0.071 12.7 0.3 3 21 330 349 328 349 0.94 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF71-203 - 549 4.6e-19 67.7 44.9 7 13 0.014 7.6 6.2 0.1 3 15 358 370 356 377 0.78 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF71-203 - 549 4.6e-19 67.7 44.9 8 13 0.0015 0.81 9.3 0.1 3 24 386 408 384 409 0.84 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF71-203 - 549 4.6e-19 67.7 44.9 9 13 0.00095 0.5 10.0 0.2 3 21 414 433 412 433 0.91 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF71-203 - 549 4.6e-19 67.7 44.9 10 13 1.5 8.2e+02 -0.3 0.3 3 12 442 451 440 455 0.87 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF71-203 - 549 4.6e-19 67.7 44.9 11 13 0.001 0.53 9.9 0.1 3 21 470 489 468 489 0.90 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF71-203 - 549 4.6e-19 67.7 44.9 12 13 0.027 14 5.4 0.1 3 16 498 512 496 517 0.77 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF71-203 - 549 4.6e-19 67.7 44.9 13 13 0.013 7 6.3 0.0 3 16 526 540 524 545 0.78 Ubiquitin-Binding Zinc Finger Zn-ribbon_8 PF09723.10 40 ZNF71-203 - 549 2.2e-17 62.9 53.9 1 9 0.00019 0.099 12.8 2.3 6 34 190 225 189 232 0.89 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF71-203 - 549 2.2e-17 62.9 53.9 2 9 2.2e-05 0.012 15.7 1.2 6 38 246 285 245 287 0.92 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF71-203 - 549 2.2e-17 62.9 53.9 3 9 1.3e-06 0.00067 19.7 1.0 6 35 302 338 301 343 0.89 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF71-203 - 549 2.2e-17 62.9 53.9 4 9 0.00013 0.066 13.3 2.4 6 35 358 394 357 398 0.84 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF71-203 - 549 2.2e-17 62.9 53.9 5 9 0.04 21 5.3 0.2 6 16 386 396 384 408 0.85 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF71-203 - 549 2.2e-17 62.9 53.9 6 9 0.0061 3.2 7.9 3.0 6 34 414 449 411 454 0.88 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF71-203 - 549 2.2e-17 62.9 53.9 7 9 0.013 7.1 6.8 2.2 6 35 442 478 441 483 0.80 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF71-203 - 549 2.2e-17 62.9 53.9 8 9 0.00011 0.059 13.5 1.8 6 34 470 505 469 510 0.93 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF71-203 - 549 2.2e-17 62.9 53.9 9 9 2.2e-05 0.012 15.8 2.5 6 38 498 537 496 539 0.93 Zinc ribbon domain zf-C2H2_6 PF13912.6 27 ZNF71-203 - 549 2.4e-16 59.3 77.7 1 13 4.5e-05 0.024 14.7 0.4 2 24 190 212 189 215 0.90 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF71-203 - 549 2.4e-16 59.3 77.7 2 13 0.013 6.7 6.8 0.9 2 11 218 227 218 228 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF71-203 - 549 2.4e-16 59.3 77.7 3 13 0.33 1.7e+02 2.3 0.3 2 24 246 268 246 271 0.86 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF71-203 - 549 2.4e-16 59.3 77.7 4 13 5.3e-05 0.028 14.4 0.3 2 22 274 294 274 298 0.90 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF71-203 - 549 2.4e-16 59.3 77.7 5 13 2.3 1.2e+03 -0.3 0.3 2 13 302 313 302 326 0.68 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF71-203 - 549 2.4e-16 59.3 77.7 6 13 0.002 1.1 9.4 0.6 2 24 330 352 330 355 0.91 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF71-203 - 549 2.4e-16 59.3 77.7 7 13 0.00013 0.067 13.2 1.5 2 24 358 380 358 383 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF71-203 - 549 2.4e-16 59.3 77.7 8 13 0.067 35 4.5 0.2 2 12 386 396 386 404 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF71-203 - 549 2.4e-16 59.3 77.7 9 13 6.6e-05 0.035 14.1 1.0 2 24 414 436 414 439 0.89 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF71-203 - 549 2.4e-16 59.3 77.7 10 13 0.11 58 3.9 0.5 2 11 442 451 442 460 0.92 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF71-203 - 549 2.4e-16 59.3 77.7 11 13 0.045 24 5.1 0.2 2 12 470 480 470 493 0.82 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF71-203 - 549 2.4e-16 59.3 77.7 12 13 0.018 9.4 6.4 0.3 2 11 498 507 498 521 0.80 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF71-203 - 549 2.4e-16 59.3 77.7 13 13 3.7e-05 0.02 14.9 0.5 2 24 526 548 526 549 0.94 C2H2-type zinc finger zinc_ribbon_15 PF17032.5 86 ZNF71-203 - 549 2.8e-08 34.4 42.8 1 6 0.0033 1.7 9.4 2.4 30 75 183 227 179 233 0.86 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF71-203 - 549 2.8e-08 34.4 42.8 2 6 0.0055 2.9 8.7 0.5 32 77 240 285 233 292 0.85 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF71-203 - 549 2.8e-08 34.4 42.8 3 6 0.00054 0.28 11.9 0.3 33 79 297 343 291 348 0.87 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF71-203 - 549 2.8e-08 34.4 42.8 4 6 0.00055 0.29 11.9 1.2 34 78 354 398 344 401 0.86 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF71-203 - 549 2.8e-08 34.4 42.8 5 6 0.11 57 4.6 4.8 36 76 412 452 398 481 0.85 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF71-203 - 549 2.8e-08 34.4 42.8 6 6 0.0046 2.4 8.9 2.6 24 74 484 534 454 544 0.57 zinc-ribbon family Zn_ribbon_recom PF13408.6 58 ZNF71-203 - 549 1.6e-07 31.7 52.6 1 10 0.11 60 4.3 0.2 8 21 192 205 191 234 0.60 Recombinase zinc beta ribbon domain Zn_ribbon_recom PF13408.6 58 ZNF71-203 - 549 1.6e-07 31.7 52.6 2 10 0.0021 1.1 9.8 1.9 8 42 248 292 246 299 0.64 Recombinase zinc beta ribbon domain Zn_ribbon_recom PF13408.6 58 ZNF71-203 - 549 1.6e-07 31.7 52.6 3 10 0.013 6.6 7.3 0.5 8 26 304 330 302 332 0.65 Recombinase zinc beta ribbon domain Zn_ribbon_recom PF13408.6 58 ZNF71-203 - 549 1.6e-07 31.7 52.6 4 10 0.022 12 6.5 1.9 7 30 331 361 330 371 0.64 Recombinase zinc beta ribbon domain Zn_ribbon_recom PF13408.6 58 ZNF71-203 - 549 1.6e-07 31.7 52.6 5 10 0.59 3.1e+02 2.0 4.2 8 30 360 389 358 394 0.58 Recombinase zinc beta ribbon domain Zn_ribbon_recom PF13408.6 58 ZNF71-203 - 549 1.6e-07 31.7 52.6 6 10 0.059 31 5.2 0.3 7 18 387 398 386 406 0.83 Recombinase zinc beta ribbon domain Zn_ribbon_recom PF13408.6 58 ZNF71-203 - 549 1.6e-07 31.7 52.6 7 10 0.00044 0.23 12.0 0.8 8 36 416 454 414 464 0.68 Recombinase zinc beta ribbon domain Zn_ribbon_recom PF13408.6 58 ZNF71-203 - 549 1.6e-07 31.7 52.6 8 10 0.042 22 5.6 0.2 7 17 471 481 470 499 0.69 Recombinase zinc beta ribbon domain Zn_ribbon_recom PF13408.6 58 ZNF71-203 - 549 1.6e-07 31.7 52.6 9 10 0.11 55 4.4 0.5 7 18 499 510 497 526 0.68 Recombinase zinc beta ribbon domain Zn_ribbon_recom PF13408.6 58 ZNF71-203 - 549 1.6e-07 31.7 52.6 10 10 0.011 6 7.5 0.7 7 19 527 539 526 546 0.85 Recombinase zinc beta ribbon domain XPA_N PF01286.18 32 ZNF71-203 - 549 7e-07 29.2 49.0 1 13 0.018 9.4 6.4 0.5 3 14 191 202 190 205 0.91 XPA protein N-terminal XPA_N PF01286.18 32 ZNF71-203 - 549 7e-07 29.2 49.0 2 13 0.2 1.1e+02 3.0 0.4 3 11 219 227 217 230 0.88 XPA protein N-terminal XPA_N PF01286.18 32 ZNF71-203 - 549 7e-07 29.2 49.0 3 13 0.51 2.7e+02 1.7 0.1 4 12 248 256 246 257 0.88 XPA protein N-terminal XPA_N PF01286.18 32 ZNF71-203 - 549 7e-07 29.2 49.0 4 13 0.16 83 3.4 0.0 3 11 275 283 273 291 0.77 XPA protein N-terminal XPA_N PF01286.18 32 ZNF71-203 - 549 7e-07 29.2 49.0 5 13 0.47 2.5e+02 1.8 0.1 4 12 304 312 302 314 0.88 XPA protein N-terminal XPA_N PF01286.18 32 ZNF71-203 - 549 7e-07 29.2 49.0 6 13 0.25 1.3e+02 2.7 0.0 3 12 331 340 329 344 0.88 XPA protein N-terminal XPA_N PF01286.18 32 ZNF71-203 - 549 7e-07 29.2 49.0 7 13 0.0083 4.4 7.4 0.2 4 14 360 370 357 373 0.91 XPA protein N-terminal XPA_N PF01286.18 32 ZNF71-203 - 549 7e-07 29.2 49.0 8 13 0.0019 0.98 9.5 0.1 3 17 387 401 385 407 0.81 XPA protein N-terminal XPA_N PF01286.18 32 ZNF71-203 - 549 7e-07 29.2 49.0 9 13 0.029 15 5.7 0.3 3 12 415 424 413 432 0.85 XPA protein N-terminal XPA_N PF01286.18 32 ZNF71-203 - 549 7e-07 29.2 49.0 10 13 9.7 5.1e+03 -2.4 0.1 3 11 443 451 442 453 0.78 XPA protein N-terminal XPA_N PF01286.18 32 ZNF71-203 - 549 7e-07 29.2 49.0 11 13 0.0024 1.2 9.2 0.0 3 17 471 485 469 488 0.86 XPA protein N-terminal XPA_N PF01286.18 32 ZNF71-203 - 549 7e-07 29.2 49.0 12 13 0.66 3.5e+02 1.4 0.1 3 12 499 508 497 512 0.88 XPA protein N-terminal XPA_N PF01286.18 32 ZNF71-203 - 549 7e-07 29.2 49.0 13 13 0.091 48 4.1 0.1 3 12 527 536 525 537 0.88 XPA protein N-terminal # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF71-203.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF71-203.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF71-203.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF71-203.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF71-203.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:13:13 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZNF713-201 - 470 4.7e-38 127.9 57.8 1 8 0.044 29 5.3 0.1 12 25 259 272 257 273 0.90 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF713-201 - 470 4.7e-38 127.9 57.8 2 8 0.27 1.8e+02 2.8 0.9 8 26 281 296 271 296 0.74 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF713-201 - 470 4.7e-38 127.9 57.8 3 8 1.7e-06 0.0011 19.3 1.1 10 25 308 323 308 324 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF713-201 - 470 4.7e-38 127.9 57.8 4 8 4.9e-08 3.3e-05 24.1 0.2 1 25 327 351 327 352 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF713-201 - 470 4.7e-38 127.9 57.8 5 8 2.1e-11 1.4e-08 34.8 0.8 2 25 356 379 355 380 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF713-201 - 470 4.7e-38 127.9 57.8 6 8 9.9e-11 6.6e-08 32.6 1.2 1 25 383 407 383 408 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF713-201 - 470 4.7e-38 127.9 57.8 7 8 6.8e-12 4.5e-09 36.3 1.9 1 25 411 435 411 436 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF713-201 - 470 4.7e-38 127.9 57.8 8 8 0.0027 1.8 9.1 3.5 1 18 439 458 439 459 0.89 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZNF713-201 - 470 6.3e-30 101.9 52.5 1 7 0.0032 2.1 9.0 0.1 5 21 266 282 265 283 0.92 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF713-201 - 470 6.3e-30 101.9 52.5 2 7 0.021 14 6.4 0.1 5 16 289 300 287 302 0.89 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF713-201 - 470 6.3e-30 101.9 52.5 3 7 2.3e-08 1.6e-05 25.1 1.8 1 23 313 335 313 335 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF713-201 - 470 6.3e-30 101.9 52.5 4 7 1e-07 7e-05 23.1 1.7 1 23 341 363 341 363 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF713-201 - 470 6.3e-30 101.9 52.5 5 7 2.9e-07 0.00019 21.7 2.3 1 23 369 391 369 391 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF713-201 - 470 6.3e-30 101.9 52.5 6 7 8.2e-08 5.5e-05 23.4 2.0 1 23 397 419 397 419 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF713-201 - 470 6.3e-30 101.9 52.5 7 7 1.5e-08 9.9e-06 25.7 1.5 1 23 425 447 425 447 0.98 Zinc finger, C2H2 type KRAB PF01352.27 42 ZNF713-201 - 470 2.3e-25 88.0 0.3 1 1 7.4e-28 4.9e-25 86.9 0.3 1 42 58 99 58 99 0.98 KRAB box zf-C2H2_4 PF13894.6 24 ZNF713-201 - 470 2.9e-14 52.5 47.5 1 7 1.3 8.4e+02 1.3 0.1 5 21 266 282 264 284 0.75 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF713-201 - 470 2.9e-14 52.5 47.5 2 7 3.2 2.1e+03 0.0 0.1 5 16 289 300 288 302 0.74 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF713-201 - 470 2.9e-14 52.5 47.5 3 7 2.4e-05 0.016 16.0 1.1 1 23 313 335 313 336 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF713-201 - 470 2.9e-14 52.5 47.5 4 7 0.00014 0.092 13.6 1.2 1 23 341 363 341 364 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF713-201 - 470 2.9e-14 52.5 47.5 5 7 5.2e-05 0.035 15.0 1.6 1 23 369 391 369 392 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF713-201 - 470 2.9e-14 52.5 47.5 6 7 3.4e-06 0.0023 18.6 1.5 1 23 397 419 397 420 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF713-201 - 470 2.9e-14 52.5 47.5 7 7 9.4e-06 0.0062 17.3 1.3 1 23 425 447 425 448 0.95 C2H2-type zinc finger # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF713-201.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF713-201.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF713-201.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF713-201.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF713-201.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:13:14 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZNF713-202 - 443 1.7e-38 129.4 57.2 1 8 0.041 27 5.4 0.1 12 25 232 245 230 246 0.90 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF713-202 - 443 1.7e-38 129.4 57.2 2 8 0.25 1.7e+02 2.9 0.9 8 26 254 269 244 269 0.74 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF713-202 - 443 1.7e-38 129.4 57.2 3 8 1.6e-06 0.001 19.4 1.1 10 25 281 296 281 297 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF713-202 - 443 1.7e-38 129.4 57.2 4 8 4.6e-08 3e-05 24.2 0.2 1 25 300 324 300 325 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF713-202 - 443 1.7e-38 129.4 57.2 5 8 1.9e-11 1.3e-08 34.9 0.8 2 25 329 352 328 353 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF713-202 - 443 1.7e-38 129.4 57.2 6 8 9.2e-11 6.1e-08 32.7 1.2 1 25 356 380 356 381 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF713-202 - 443 1.7e-38 129.4 57.2 7 8 6.3e-12 4.2e-09 36.4 1.9 1 25 384 408 384 409 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF713-202 - 443 1.7e-38 129.4 57.2 8 8 0.0026 1.7 9.2 3.5 1 18 412 431 412 432 0.89 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZNF713-202 - 443 3.6e-30 102.7 52.5 1 7 0.003 2 9.1 0.1 5 21 239 255 238 256 0.92 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF713-202 - 443 3.6e-30 102.7 52.5 2 7 0.02 13 6.5 0.1 5 16 262 273 260 275 0.89 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF713-202 - 443 3.6e-30 102.7 52.5 3 7 2.2e-08 1.4e-05 25.2 1.8 1 23 286 308 286 308 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF713-202 - 443 3.6e-30 102.7 52.5 4 7 9.8e-08 6.5e-05 23.2 1.7 1 23 314 336 314 336 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF713-202 - 443 3.6e-30 102.7 52.5 5 7 2.7e-07 0.00018 21.8 2.3 1 23 342 364 342 364 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF713-202 - 443 3.6e-30 102.7 52.5 6 7 7.7e-08 5.1e-05 23.5 2.0 1 23 370 392 370 392 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF713-202 - 443 3.6e-30 102.7 52.5 7 7 1.4e-08 9.2e-06 25.8 1.5 1 23 398 420 398 420 0.98 Zinc finger, C2H2 type KRAB PF01352.27 42 ZNF713-202 - 443 1.9e-25 88.2 0.3 1 1 6.8e-28 4.5e-25 87.0 0.3 1 42 31 72 31 72 0.98 KRAB box zf-C2H2_4 PF13894.6 24 ZNF713-202 - 443 1.8e-14 53.2 47.5 1 7 1.2 7.8e+02 1.4 0.1 5 21 239 255 237 257 0.75 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF713-202 - 443 1.8e-14 53.2 47.5 2 7 3 2e+03 0.1 0.1 5 16 262 273 261 275 0.74 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF713-202 - 443 1.8e-14 53.2 47.5 3 7 2.2e-05 0.015 16.1 1.1 1 23 286 308 286 309 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF713-202 - 443 1.8e-14 53.2 47.5 4 7 0.00013 0.086 13.7 1.2 1 23 314 336 314 337 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF713-202 - 443 1.8e-14 53.2 47.5 5 7 4.8e-05 0.032 15.1 1.6 1 23 342 364 342 365 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF713-202 - 443 1.8e-14 53.2 47.5 6 7 3.2e-06 0.0021 18.7 1.5 1 23 370 392 370 393 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF713-202 - 443 1.8e-14 53.2 47.5 7 7 8.7e-06 0.0058 17.4 1.3 1 23 398 420 398 421 0.95 C2H2-type zinc finger # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF713-202.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF713-202.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF713-202.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF713-202.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF713-202.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:13:14 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- KRAB PF01352.27 42 ZNF713-203 - 109 2.3e-26 91.2 0.3 1 1 2.4e-30 4.4e-26 90.3 0.3 1 42 31 72 31 72 0.98 KRAB box # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF713-203.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF713-203.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF713-203.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF713-203.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF713-203.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:13:14 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- KRAB PF01352.27 42 ZNF713-204 - 103 3.9e-26 90.4 0.3 1 2 2.1e-30 3.9e-26 90.4 0.3 1 42 31 72 31 72 0.98 KRAB box KRAB PF01352.27 42 ZNF713-204 - 103 3.9e-26 90.4 0.3 2 2 0.34 6.1e+03 -3.0 0.6 13 16 87 90 87 92 0.79 KRAB box # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF713-204.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF713-204.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF713-204.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF713-204.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF713-204.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:13:15 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF713-205.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF713-205.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF713-205.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF713-205.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF713-205.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:13:15 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZNF713-206 - 430 1.4e-38 129.6 57.4 1 8 0.039 26 5.5 0.1 12 25 219 232 217 233 0.90 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF713-206 - 430 1.4e-38 129.6 57.4 2 8 0.26 1.7e+02 2.9 1.0 8 26 241 256 231 256 0.74 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF713-206 - 430 1.4e-38 129.6 57.4 3 8 1.5e-06 0.001 19.4 1.1 10 25 268 283 268 284 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF713-206 - 430 1.4e-38 129.6 57.4 4 8 4.4e-08 2.9e-05 24.3 0.2 1 25 287 311 287 312 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF713-206 - 430 1.4e-38 129.6 57.4 5 8 1.9e-11 1.2e-08 34.9 0.8 2 25 316 339 315 340 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF713-206 - 430 1.4e-38 129.6 57.4 6 8 8.9e-11 5.9e-08 32.8 1.2 1 25 343 367 343 368 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF713-206 - 430 1.4e-38 129.6 57.4 7 8 6.1e-12 4e-09 36.5 1.9 1 25 371 395 371 396 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF713-206 - 430 1.4e-38 129.6 57.4 8 8 0.0025 1.6 9.3 3.5 1 18 399 418 399 419 0.89 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZNF713-206 - 430 2.9e-30 103.0 52.5 1 7 0.0029 1.9 9.1 0.1 5 21 226 242 225 243 0.92 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF713-206 - 430 2.9e-30 103.0 52.5 2 7 0.019 13 6.5 0.1 5 16 249 260 247 262 0.89 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF713-206 - 430 2.9e-30 103.0 52.5 3 7 2.1e-08 1.4e-05 25.3 1.8 1 23 273 295 273 295 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF713-206 - 430 2.9e-30 103.0 52.5 4 7 9.4e-08 6.3e-05 23.2 1.7 1 23 301 323 301 323 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF713-206 - 430 2.9e-30 103.0 52.5 5 7 2.6e-07 0.00017 21.8 2.3 1 23 329 351 329 351 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF713-206 - 430 2.9e-30 103.0 52.5 6 7 7.4e-08 4.9e-05 23.6 2.0 1 23 357 379 357 379 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF713-206 - 430 2.9e-30 103.0 52.5 7 7 1.3e-08 8.8e-06 25.9 1.5 1 23 385 407 385 407 0.98 Zinc finger, C2H2 type KRAB PF01352.27 42 ZNF713-206 - 430 2e-25 88.2 0.3 1 1 6.6e-28 4.4e-25 87.1 0.3 1 42 18 59 18 59 0.98 KRAB box zf-C2H2_4 PF13894.6 24 ZNF713-206 - 430 1.4e-14 53.5 47.5 1 7 1.1 7.6e+02 1.5 0.1 5 21 226 242 224 244 0.75 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF713-206 - 430 1.4e-14 53.5 47.5 2 7 2.9 1.9e+03 0.2 0.1 5 16 249 260 248 262 0.74 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF713-206 - 430 1.4e-14 53.5 47.5 3 7 2.1e-05 0.014 16.2 1.1 1 23 273 295 273 296 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF713-206 - 430 1.4e-14 53.5 47.5 4 7 0.00012 0.083 13.8 1.2 1 23 301 323 301 324 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF713-206 - 430 1.4e-14 53.5 47.5 5 7 4.7e-05 0.031 15.1 1.6 1 23 329 351 329 352 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF713-206 - 430 1.4e-14 53.5 47.5 6 7 3.1e-06 0.002 18.8 1.5 1 23 357 379 357 380 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF713-206 - 430 1.4e-14 53.5 47.5 7 7 8.4e-06 0.0056 17.4 1.3 1 23 385 407 385 408 0.95 C2H2-type zinc finger # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF713-206.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF713-206.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF713-206.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF713-206.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF713-206.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:13:16 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZNF714-201 - 519 4.3e-96 311.4 125.6 1 15 6.2 4.7e+03 -1.7 0.2 2 23 36 65 36 67 0.47 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF714-201 - 519 4.3e-96 311.4 125.6 2 15 1 7.7e+02 0.8 0.3 10 24 76 90 74 92 0.85 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF714-201 - 519 4.3e-96 311.4 125.6 3 15 1.2e-08 8.7e-06 25.9 3.5 3 24 97 118 95 118 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF714-201 - 519 4.3e-96 311.4 125.6 4 15 3.7e-07 0.00027 21.2 3.0 3 26 125 148 123 148 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF714-201 - 519 4.3e-96 311.4 125.6 5 15 2.1e-12 1.5e-09 37.8 4.2 2 26 152 176 151 176 0.97 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF714-201 - 519 4.3e-96 311.4 125.6 6 15 5.3e-09 4e-06 27.0 2.4 2 25 180 203 179 204 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF714-201 - 519 4.3e-96 311.4 125.6 7 15 1.5e-09 1.1e-06 28.8 3.6 1 26 207 232 207 232 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF714-201 - 519 4.3e-96 311.4 125.6 8 15 6.6e-08 4.9e-05 23.6 1.7 1 25 235 259 235 260 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF714-201 - 519 4.3e-96 311.4 125.6 9 15 2.7e-08 2e-05 24.8 0.8 2 25 264 287 263 287 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF714-201 - 519 4.3e-96 311.4 125.6 10 15 1.1e-11 8.3e-09 35.5 1.7 2 25 292 315 291 315 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF714-201 - 519 4.3e-96 311.4 125.6 11 15 6.1e-10 4.5e-07 30.0 3.9 1 26 319 344 319 344 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF714-201 - 519 4.3e-96 311.4 125.6 12 15 2e-10 1.5e-07 31.5 0.5 2 25 348 371 347 372 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF714-201 - 519 4.3e-96 311.4 125.6 13 15 9.2e-11 6.9e-08 32.6 0.7 1 25 375 399 375 400 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF714-201 - 519 4.3e-96 311.4 125.6 14 15 4.6e-12 3.4e-09 36.7 1.3 1 25 403 427 403 428 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF714-201 - 519 4.3e-96 311.4 125.6 15 15 2.3e-10 1.7e-07 31.3 0.4 1 25 431 455 431 456 0.96 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZNF714-201 - 519 7.2e-69 224.6 114.1 1 14 5.6 4.2e+03 -1.4 0.6 8 19 92 103 83 104 0.79 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF714-201 - 519 7.2e-69 224.6 114.1 2 14 0.0025 1.8 9.1 8.3 1 23 109 131 109 131 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF714-201 - 519 7.2e-69 224.6 114.1 3 14 9.9e-09 7.4e-06 26.1 2.2 1 23 137 159 137 159 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF714-201 - 519 7.2e-69 224.6 114.1 4 14 9e-08 6.8e-05 23.1 2.3 1 23 165 187 165 187 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF714-201 - 519 7.2e-69 224.6 114.1 5 14 6.4e-07 0.00048 20.4 3.4 1 23 193 215 193 215 0.95 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF714-201 - 519 7.2e-69 224.6 114.1 6 14 1.5e-07 0.00011 22.4 1.1 1 23 221 243 221 243 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF714-201 - 519 7.2e-69 224.6 114.1 7 14 1.6e-07 0.00012 22.3 1.2 1 23 249 271 249 271 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF714-201 - 519 7.2e-69 224.6 114.1 8 14 2.2e-06 0.0016 18.8 0.9 1 23 277 299 277 299 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF714-201 - 519 7.2e-69 224.6 114.1 9 14 9.7e-08 7.3e-05 23.0 1.3 1 23 305 327 305 327 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF714-201 - 519 7.2e-69 224.6 114.1 10 14 1.8e-07 0.00014 22.2 1.0 1 23 333 355 333 355 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF714-201 - 519 7.2e-69 224.6 114.1 11 14 4.8e-09 3.6e-06 27.1 0.4 1 23 361 383 361 383 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF714-201 - 519 7.2e-69 224.6 114.1 12 14 1.1e-09 8.1e-07 29.2 0.9 1 23 389 411 389 411 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF714-201 - 519 7.2e-69 224.6 114.1 13 14 6.2e-09 4.6e-06 26.8 0.4 1 23 417 439 417 439 0.95 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF714-201 - 519 7.2e-69 224.6 114.1 14 14 4e-08 3e-05 24.2 0.4 1 21 445 465 445 466 0.96 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZNF714-201 - 519 1.5e-32 109.5 99.2 1 13 0.013 9.7 7.3 6.3 1 23 109 131 109 132 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF714-201 - 519 1.5e-32 109.5 99.2 2 13 1.1e-05 0.0086 16.8 1.7 1 23 137 159 137 160 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF714-201 - 519 1.5e-32 109.5 99.2 3 13 0.00025 0.19 12.7 1.8 1 23 165 187 165 188 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF714-201 - 519 1.5e-32 109.5 99.2 4 13 0.0066 4.9 8.3 2.8 1 23 193 215 193 216 0.86 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF714-201 - 519 1.5e-32 109.5 99.2 5 13 0.00019 0.14 13.0 0.9 1 23 221 243 221 244 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF714-201 - 519 1.5e-32 109.5 99.2 6 13 0.00025 0.19 12.7 0.9 1 23 249 271 249 272 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF714-201 - 519 1.5e-32 109.5 99.2 7 13 9.8e-05 0.074 13.9 0.8 1 23 277 299 277 300 0.91 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF714-201 - 519 1.5e-32 109.5 99.2 8 13 0.00015 0.11 13.4 1.1 1 23 305 327 305 328 0.91 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF714-201 - 519 1.5e-32 109.5 99.2 9 13 0.00057 0.43 11.6 0.8 1 23 333 355 333 356 0.90 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF714-201 - 519 1.5e-32 109.5 99.2 10 13 2.7e-05 0.02 15.7 0.4 1 23 361 383 361 384 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF714-201 - 519 1.5e-32 109.5 99.2 11 13 1.1e-05 0.0083 16.9 0.6 1 23 389 411 389 412 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF714-201 - 519 1.5e-32 109.5 99.2 12 13 0.00017 0.13 13.2 0.3 1 19 417 435 417 439 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF714-201 - 519 1.5e-32 109.5 99.2 13 13 3.3e-05 0.025 15.4 0.3 1 21 445 465 445 467 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF714-201 - 519 1.3e-21 76.0 100.9 1 13 0.05 38 4.4 4.8 2 24 109 131 109 134 0.87 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF714-201 - 519 1.3e-21 76.0 100.9 2 13 2.6e-05 0.019 14.9 1.0 2 24 137 159 136 162 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF714-201 - 519 1.3e-21 76.0 100.9 3 13 0.0091 6.8 6.8 2.2 2 21 165 184 165 187 0.85 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF714-201 - 519 1.3e-21 76.0 100.9 4 13 0.035 26 5.0 1.7 2 11 193 202 193 215 0.80 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF714-201 - 519 1.3e-21 76.0 100.9 5 13 0.00011 0.085 12.9 1.3 2 24 221 244 221 247 0.88 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF714-201 - 519 1.3e-21 76.0 100.9 6 13 3.9e-05 0.029 14.4 0.9 2 24 249 271 249 274 0.92 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF714-201 - 519 1.3e-21 76.0 100.9 7 13 0.0029 2.2 8.4 1.2 2 24 277 299 276 302 0.88 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF714-201 - 519 1.3e-21 76.0 100.9 8 13 0.0048 3.6 7.7 1.2 2 21 305 324 305 327 0.82 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF714-201 - 519 1.3e-21 76.0 100.9 9 13 0.0069 5.2 7.2 0.8 2 12 333 343 333 356 0.82 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF714-201 - 519 1.3e-21 76.0 100.9 10 13 5.3e-05 0.039 14.0 0.8 2 24 361 383 361 386 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF714-201 - 519 1.3e-21 76.0 100.9 11 13 1.7e-06 0.0013 18.7 0.6 2 24 389 411 388 414 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF714-201 - 519 1.3e-21 76.0 100.9 12 13 3.2e-05 0.024 14.7 0.4 2 24 417 439 417 442 0.92 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF714-201 - 519 1.3e-21 76.0 100.9 13 13 0.0011 0.84 9.7 0.8 2 22 445 465 444 466 0.88 C2H2-type zinc finger XPA_N PF01286.18 32 ZNF714-201 - 519 4.6e-18 64.9 64.7 1 13 2.3 1.7e+03 -0.8 3.7 3 12 110 119 108 120 0.88 XPA protein N-terminal XPA_N PF01286.18 32 ZNF714-201 - 519 4.6e-18 64.9 64.7 2 13 0.11 81 3.4 0.7 3 12 138 147 137 149 0.87 XPA protein N-terminal XPA_N PF01286.18 32 ZNF714-201 - 519 4.6e-18 64.9 64.7 3 13 0.00071 0.53 10.4 0.2 3 14 166 177 164 184 0.86 XPA protein N-terminal XPA_N PF01286.18 32 ZNF714-201 - 519 4.6e-18 64.9 64.7 4 13 0.0016 1.2 9.2 0.1 3 17 194 208 192 213 0.79 XPA protein N-terminal XPA_N PF01286.18 32 ZNF714-201 - 519 4.6e-18 64.9 64.7 5 13 0.0055 4.1 7.5 0.1 3 12 222 231 220 238 0.90 XPA protein N-terminal XPA_N PF01286.18 32 ZNF714-201 - 519 4.6e-18 64.9 64.7 6 13 0.0027 2 8.5 0.3 3 18 250 266 248 267 0.79 XPA protein N-terminal XPA_N PF01286.18 32 ZNF714-201 - 519 4.6e-18 64.9 64.7 7 13 0.027 20 5.3 0.1 3 14 278 289 277 294 0.86 XPA protein N-terminal XPA_N PF01286.18 32 ZNF714-201 - 519 4.6e-18 64.9 64.7 8 13 0.00076 0.57 10.3 0.1 3 15 306 318 304 324 0.82 XPA protein N-terminal XPA_N PF01286.18 32 ZNF714-201 - 519 4.6e-18 64.9 64.7 9 13 0.0013 0.94 9.6 0.2 3 14 334 345 332 349 0.88 XPA protein N-terminal XPA_N PF01286.18 32 ZNF714-201 - 519 4.6e-18 64.9 64.7 10 13 0.00064 0.47 10.5 0.2 3 14 362 373 360 379 0.89 XPA protein N-terminal XPA_N PF01286.18 32 ZNF714-201 - 519 4.6e-18 64.9 64.7 11 13 0.0014 1.1 9.4 0.1 3 14 390 401 389 407 0.88 XPA protein N-terminal XPA_N PF01286.18 32 ZNF714-201 - 519 4.6e-18 64.9 64.7 12 13 0.0012 0.92 9.6 0.1 3 14 418 429 416 435 0.88 XPA protein N-terminal XPA_N PF01286.18 32 ZNF714-201 - 519 4.6e-18 64.9 64.7 13 13 0.00075 0.56 10.3 0.3 3 14 446 457 445 463 0.89 XPA protein N-terminal zf-C2H2_jaz PF12171.8 27 ZNF714-201 - 519 5.1e-17 61.7 82.4 1 13 5.6 4.2e+03 -1.8 0.1 7 12 83 88 82 88 0.85 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF714-201 - 519 5.1e-17 61.7 82.4 2 13 0.00085 0.63 10.4 0.6 4 21 139 156 136 157 0.87 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF714-201 - 519 5.1e-17 61.7 82.4 3 13 5.6e-05 0.042 14.1 0.2 2 21 165 184 164 184 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF714-201 - 519 5.1e-17 61.7 82.4 4 13 0.013 9.4 6.7 0.6 2 20 193 211 192 212 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF714-201 - 519 5.1e-17 61.7 82.4 5 13 0.0001 0.076 13.3 0.1 2 21 221 240 220 240 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF714-201 - 519 5.1e-17 61.7 82.4 6 13 0.0046 3.4 8.1 1.2 2 15 249 262 248 268 0.77 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF714-201 - 519 5.1e-17 61.7 82.4 7 13 0.0034 2.6 8.5 0.2 2 22 277 297 276 297 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF714-201 - 519 5.1e-17 61.7 82.4 8 13 0.018 13 6.2 0.2 2 20 305 323 304 324 0.87 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF714-201 - 519 5.1e-17 61.7 82.4 9 13 0.0067 5 7.5 0.4 2 20 333 351 332 352 0.88 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF714-201 - 519 5.1e-17 61.7 82.4 10 13 0.0017 1.3 9.4 0.3 2 21 361 380 360 381 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF714-201 - 519 5.1e-17 61.7 82.4 11 13 0.00015 0.11 12.8 0.2 2 22 389 409 388 409 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF714-201 - 519 5.1e-17 61.7 82.4 12 13 0.00038 0.28 11.5 0.2 2 20 417 435 416 436 0.95 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF714-201 - 519 5.1e-17 61.7 82.4 13 13 0.0006 0.45 10.9 0.4 2 22 445 465 444 465 0.94 Zinc-finger double-stranded RNA-binding zf_UBZ PF18439.1 32 ZNF714-201 - 519 2.5e-16 58.9 61.8 1 13 0.25 1.9e+02 1.8 0.8 3 12 109 118 107 127 0.87 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF714-201 - 519 2.5e-16 58.9 61.8 2 13 0.0025 1.9 8.2 0.2 1 14 135 148 135 156 0.81 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF714-201 - 519 2.5e-16 58.9 61.8 3 13 0.0015 1.1 8.9 0.4 3 20 165 183 163 184 0.87 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF714-201 - 519 2.5e-16 58.9 61.8 4 13 0.0039 2.9 7.6 0.5 3 20 193 211 191 212 0.80 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF714-201 - 519 2.5e-16 58.9 61.8 5 13 0.0017 1.2 8.7 0.2 3 20 221 239 219 240 0.87 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF714-201 - 519 2.5e-16 58.9 61.8 6 13 0.023 17 5.1 0.2 3 12 249 258 247 265 0.86 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF714-201 - 519 2.5e-16 58.9 61.8 7 13 0.0073 5.5 6.7 0.1 2 12 276 286 275 296 0.82 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF714-201 - 519 2.5e-16 58.9 61.8 8 13 0.0013 0.97 9.1 0.2 3 20 305 323 303 324 0.83 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF714-201 - 519 2.5e-16 58.9 61.8 9 13 0.002 1.5 8.4 0.2 3 17 333 347 331 352 0.81 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF714-201 - 519 2.5e-16 58.9 61.8 10 13 0.0023 1.8 8.3 0.2 3 20 361 379 359 380 0.80 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF714-201 - 519 2.5e-16 58.9 61.8 11 13 0.0018 1.3 8.6 0.1 3 20 389 407 387 408 0.83 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF714-201 - 519 2.5e-16 58.9 61.8 12 13 0.0028 2.1 8.0 0.1 3 20 417 435 415 436 0.80 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF714-201 - 519 2.5e-16 58.9 61.8 13 13 0.0011 0.81 9.3 0.2 2 17 444 460 443 464 0.79 Ubiquitin-Binding Zinc Finger Zn-ribbon_8 PF09723.10 40 ZNF714-201 - 519 2.4e-12 46.7 87.6 1 13 0.14 1e+02 3.1 0.7 6 15 109 118 108 129 0.83 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF714-201 - 519 2.4e-12 46.7 87.6 2 13 0.0036 2.7 8.2 7.2 6 34 137 172 136 174 0.70 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF714-201 - 519 2.4e-12 46.7 87.6 3 13 0.00097 0.73 10.0 6.8 6 34 165 200 164 203 0.89 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF714-201 - 519 2.4e-12 46.7 87.6 4 13 0.008 6 7.1 7.5 6 34 193 228 191 231 0.79 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF714-201 - 519 2.4e-12 46.7 87.6 5 13 0.0081 6.1 7.1 6.7 6 36 221 258 220 260 0.75 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF714-201 - 519 2.4e-12 46.7 87.6 6 13 0.0085 6.3 7.0 1.0 6 19 249 262 248 269 0.88 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF714-201 - 519 2.4e-12 46.7 87.6 7 13 0.00013 0.095 12.8 5.5 6 34 277 312 276 314 0.89 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF714-201 - 519 2.4e-12 46.7 87.6 8 13 0.00022 0.16 12.1 6.0 6 34 305 340 303 340 0.88 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF714-201 - 519 2.4e-12 46.7 87.6 9 13 5.6e-05 0.042 14.0 5.6 6 35 333 369 332 372 0.90 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF714-201 - 519 2.4e-12 46.7 87.6 10 13 0.0025 1.9 8.7 0.6 6 17 361 372 360 382 0.82 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF714-201 - 519 2.4e-12 46.7 87.6 11 13 0.00012 0.088 12.9 6.1 6 38 389 428 388 429 0.84 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF714-201 - 519 2.4e-12 46.7 87.6 12 13 0.0029 2.2 8.5 0.7 6 17 417 428 415 436 0.85 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF714-201 - 519 2.4e-12 46.7 87.6 13 13 0.00099 0.74 10.0 0.1 6 18 445 457 444 472 0.81 Zinc ribbon domain zf-C2H2_11 PF16622.5 29 ZNF714-201 - 519 1.4e-10 40.8 49.9 1 14 6.4 4.8e+03 -2.6 0.0 17 23 33 39 33 42 0.84 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF714-201 - 519 1.4e-10 40.8 49.9 2 14 2.5 1.9e+03 -1.2 2.6 5 26 109 130 106 131 0.86 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF714-201 - 519 1.4e-10 40.8 49.9 3 14 0.0089 6.6 6.6 0.2 2 24 134 156 133 159 0.83 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF714-201 - 519 1.4e-10 40.8 49.9 4 14 0.076 57 3.6 0.1 5 24 165 184 162 187 0.77 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF714-201 - 519 1.4e-10 40.8 49.9 5 14 0.12 87 3.0 0.1 5 14 193 202 190 214 0.77 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF714-201 - 519 1.4e-10 40.8 49.9 6 14 0.0067 5 7.0 0.0 5 26 221 242 218 244 0.93 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF714-201 - 519 1.4e-10 40.8 49.9 7 14 1.6 1.2e+03 -0.6 0.1 5 25 249 269 247 271 0.72 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF714-201 - 519 1.4e-10 40.8 49.9 8 14 0.0011 0.82 9.5 0.1 3 26 275 298 274 299 0.92 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF714-201 - 519 1.4e-10 40.8 49.9 9 14 0.046 34 4.3 0.1 5 25 305 325 302 327 0.79 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF714-201 - 519 1.4e-10 40.8 49.9 10 14 0.097 73 3.3 0.1 5 19 333 347 330 355 0.72 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF714-201 - 519 1.4e-10 40.8 49.9 11 14 0.0054 4 7.3 0.0 5 26 361 382 358 383 0.90 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF714-201 - 519 1.4e-10 40.8 49.9 12 14 0.066 49 3.8 0.2 5 26 389 410 388 411 0.82 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF714-201 - 519 1.4e-10 40.8 49.9 13 14 0.0073 5.5 6.8 0.0 5 26 417 438 414 439 0.90 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF714-201 - 519 1.4e-10 40.8 49.9 14 14 0.00018 0.13 12.0 0.1 3 26 443 466 442 467 0.93 zinc-finger C2H2-type # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF714-201.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF714-201.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF714-201.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF714-201.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF714-201.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:13:16 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZNF714-202 - 555 1.4e-95 309.8 125.6 1 15 7 5.1e+03 -1.8 0.2 2 23 72 101 72 103 0.47 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF714-202 - 555 1.4e-95 309.8 125.6 2 15 1.2 8.3e+02 0.7 0.3 10 24 112 126 110 128 0.85 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF714-202 - 555 1.4e-95 309.8 125.6 3 15 1.3e-08 9.4e-06 25.8 3.5 3 24 133 154 131 154 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF714-202 - 555 1.4e-95 309.8 125.6 4 15 4.1e-07 0.0003 21.1 3.0 3 26 161 184 159 184 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF714-202 - 555 1.4e-95 309.8 125.6 5 15 2.3e-12 1.7e-09 37.7 4.2 2 26 188 212 187 212 0.97 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF714-202 - 555 1.4e-95 309.8 125.6 6 15 6e-09 4.3e-06 26.9 2.4 2 25 216 239 215 240 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF714-202 - 555 1.4e-95 309.8 125.6 7 15 1.7e-09 1.2e-06 28.7 3.6 1 26 243 268 243 268 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF714-202 - 555 1.4e-95 309.8 125.6 8 15 7.4e-08 5.3e-05 23.4 1.7 1 25 271 295 271 296 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF714-202 - 555 1.4e-95 309.8 125.6 9 15 3e-08 2.2e-05 24.7 0.8 2 25 300 323 299 323 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF714-202 - 555 1.4e-95 309.8 125.6 10 15 1.3e-11 9e-09 35.4 1.7 2 25 328 351 327 351 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF714-202 - 555 1.4e-95 309.8 125.6 11 15 6.9e-10 4.9e-07 29.9 3.9 1 26 355 380 355 380 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF714-202 - 555 1.4e-95 309.8 125.6 12 15 2.3e-10 1.7e-07 31.4 0.5 2 25 384 407 383 408 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF714-202 - 555 1.4e-95 309.8 125.6 13 15 1e-10 7.4e-08 32.5 0.7 1 25 411 435 411 436 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF714-202 - 555 1.4e-95 309.8 125.6 14 15 5.2e-12 3.7e-09 36.6 1.3 1 25 439 463 439 464 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF714-202 - 555 1.4e-95 309.8 125.6 15 15 2.6e-10 1.9e-07 31.2 0.4 1 25 467 491 467 492 0.96 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZNF714-202 - 555 2.4e-68 223.0 114.1 1 14 6.3 4.5e+03 -1.5 0.6 8 19 128 139 119 140 0.79 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF714-202 - 555 2.4e-68 223.0 114.1 2 14 0.0028 2 9.0 8.3 1 23 145 167 145 167 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF714-202 - 555 2.4e-68 223.0 114.1 3 14 1.1e-08 8e-06 26.0 2.2 1 23 173 195 173 195 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF714-202 - 555 2.4e-68 223.0 114.1 4 14 1e-07 7.3e-05 23.0 2.3 1 23 201 223 201 223 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF714-202 - 555 2.4e-68 223.0 114.1 5 14 7.2e-07 0.00052 20.3 3.4 1 23 229 251 229 251 0.95 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF714-202 - 555 2.4e-68 223.0 114.1 6 14 1.7e-07 0.00012 22.3 1.1 1 23 257 279 257 279 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF714-202 - 555 2.4e-68 223.0 114.1 7 14 1.9e-07 0.00013 22.2 1.2 1 23 285 307 285 307 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF714-202 - 555 2.4e-68 223.0 114.1 8 14 2.4e-06 0.0017 18.7 0.9 1 23 313 335 313 335 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF714-202 - 555 2.4e-68 223.0 114.1 9 14 1.1e-07 7.9e-05 22.9 1.3 1 23 341 363 341 363 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF714-202 - 555 2.4e-68 223.0 114.1 10 14 2.1e-07 0.00015 22.0 1.0 1 23 369 391 369 391 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF714-202 - 555 2.4e-68 223.0 114.1 11 14 5.4e-09 3.9e-06 27.0 0.4 1 23 397 419 397 419 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF714-202 - 555 2.4e-68 223.0 114.1 12 14 1.2e-09 8.8e-07 29.1 0.9 1 23 425 447 425 447 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF714-202 - 555 2.4e-68 223.0 114.1 13 14 7e-09 5e-06 26.7 0.4 1 23 453 475 453 475 0.95 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF714-202 - 555 2.4e-68 223.0 114.1 14 14 4.5e-08 3.2e-05 24.1 0.4 1 21 481 501 481 502 0.96 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZNF714-202 - 555 4.7e-32 107.9 99.2 1 13 0.015 11 7.2 6.3 1 23 145 167 145 168 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF714-202 - 555 4.7e-32 107.9 99.2 2 13 1.3e-05 0.0093 16.7 1.7 1 23 173 195 173 196 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF714-202 - 555 4.7e-32 107.9 99.2 3 13 0.00028 0.2 12.6 1.8 1 23 201 223 201 224 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF714-202 - 555 4.7e-32 107.9 99.2 4 13 0.0074 5.3 8.2 2.8 1 23 229 251 229 252 0.86 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF714-202 - 555 4.7e-32 107.9 99.2 5 13 0.00021 0.15 12.9 0.9 1 23 257 279 257 280 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF714-202 - 555 4.7e-32 107.9 99.2 6 13 0.00028 0.2 12.6 0.9 1 23 285 307 285 308 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF714-202 - 555 4.7e-32 107.9 99.2 7 13 0.00011 0.08 13.8 0.8 1 23 313 335 313 336 0.91 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF714-202 - 555 4.7e-32 107.9 99.2 8 13 0.00017 0.12 13.3 1.1 1 23 341 363 341 364 0.91 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF714-202 - 555 4.7e-32 107.9 99.2 9 13 0.00064 0.46 11.5 0.8 1 23 369 391 369 392 0.90 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF714-202 - 555 4.7e-32 107.9 99.2 10 13 3e-05 0.022 15.6 0.4 1 23 397 419 397 420 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF714-202 - 555 4.7e-32 107.9 99.2 11 13 1.3e-05 0.009 16.8 0.6 1 23 425 447 425 448 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF714-202 - 555 4.7e-32 107.9 99.2 12 13 0.00019 0.14 13.1 0.3 1 19 453 471 453 475 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF714-202 - 555 4.7e-32 107.9 99.2 13 13 3.7e-05 0.027 15.3 0.3 1 21 481 501 481 503 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF714-202 - 555 3.8e-21 74.6 100.9 1 13 0.057 41 4.3 4.8 2 24 145 167 145 170 0.87 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF714-202 - 555 3.8e-21 74.6 100.9 2 13 2.9e-05 0.021 14.8 1.0 2 24 173 195 172 198 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF714-202 - 555 3.8e-21 74.6 100.9 3 13 0.01 7.3 6.7 2.2 2 21 201 220 201 223 0.85 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF714-202 - 555 3.8e-21 74.6 100.9 4 13 0.039 28 4.9 1.7 2 11 229 238 229 251 0.80 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF714-202 - 555 3.8e-21 74.6 100.9 5 13 0.00013 0.092 12.8 1.3 2 24 257 280 257 283 0.88 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF714-202 - 555 3.8e-21 74.6 100.9 6 13 4.4e-05 0.032 14.2 0.9 2 24 285 307 285 310 0.92 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF714-202 - 555 3.8e-21 74.6 100.9 7 13 0.0033 2.3 8.3 1.1 2 24 313 335 312 338 0.88 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF714-202 - 555 3.8e-21 74.6 100.9 8 13 0.0054 3.9 7.6 1.2 2 21 341 360 341 363 0.82 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF714-202 - 555 3.8e-21 74.6 100.9 9 13 0.0078 5.6 7.1 0.8 2 12 369 379 369 392 0.82 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF714-202 - 555 3.8e-21 74.6 100.9 10 13 5.9e-05 0.043 13.8 0.8 2 24 397 419 397 422 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF714-202 - 555 3.8e-21 74.6 100.9 11 13 1.9e-06 0.0014 18.6 0.6 2 24 425 447 424 450 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF714-202 - 555 3.8e-21 74.6 100.9 12 13 3.6e-05 0.026 14.5 0.4 2 24 453 475 453 478 0.92 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF714-202 - 555 3.8e-21 74.6 100.9 13 13 0.0013 0.91 9.6 0.8 2 22 481 501 480 502 0.88 C2H2-type zinc finger XPA_N PF01286.18 32 ZNF714-202 - 555 1.3e-17 63.5 64.7 1 13 2.5 1.8e+03 -0.9 3.7 3 12 146 155 144 156 0.88 XPA protein N-terminal XPA_N PF01286.18 32 ZNF714-202 - 555 1.3e-17 63.5 64.7 2 13 0.12 87 3.3 0.7 3 12 174 183 173 185 0.87 XPA protein N-terminal XPA_N PF01286.18 32 ZNF714-202 - 555 1.3e-17 63.5 64.7 3 13 0.0008 0.58 10.3 0.2 3 14 202 213 200 220 0.86 XPA protein N-terminal XPA_N PF01286.18 32 ZNF714-202 - 555 1.3e-17 63.5 64.7 4 13 0.0018 1.3 9.1 0.1 3 17 230 244 228 249 0.79 XPA protein N-terminal XPA_N PF01286.18 32 ZNF714-202 - 555 1.3e-17 63.5 64.7 5 13 0.0062 4.4 7.4 0.1 3 12 258 267 256 274 0.90 XPA protein N-terminal XPA_N PF01286.18 32 ZNF714-202 - 555 1.3e-17 63.5 64.7 6 13 0.003 2.2 8.4 0.3 3 18 286 302 284 303 0.79 XPA protein N-terminal XPA_N PF01286.18 32 ZNF714-202 - 555 1.3e-17 63.5 64.7 7 13 0.03 21 5.2 0.1 3 14 314 325 313 330 0.86 XPA protein N-terminal XPA_N PF01286.18 32 ZNF714-202 - 555 1.3e-17 63.5 64.7 8 13 0.00085 0.61 10.2 0.1 3 15 342 354 340 360 0.82 XPA protein N-terminal XPA_N PF01286.18 32 ZNF714-202 - 555 1.3e-17 63.5 64.7 9 13 0.0014 1 9.5 0.2 3 14 370 381 368 385 0.88 XPA protein N-terminal XPA_N PF01286.18 32 ZNF714-202 - 555 1.3e-17 63.5 64.7 10 13 0.00071 0.51 10.4 0.2 3 14 398 409 396 415 0.89 XPA protein N-terminal XPA_N PF01286.18 32 ZNF714-202 - 555 1.3e-17 63.5 64.7 11 13 0.0016 1.1 9.3 0.1 3 14 426 437 425 443 0.88 XPA protein N-terminal XPA_N PF01286.18 32 ZNF714-202 - 555 1.3e-17 63.5 64.7 12 13 0.0014 0.99 9.5 0.1 3 14 454 465 452 471 0.88 XPA protein N-terminal XPA_N PF01286.18 32 ZNF714-202 - 555 1.3e-17 63.5 64.7 13 13 0.00084 0.6 10.2 0.3 3 14 482 493 481 499 0.89 XPA protein N-terminal zf-C2H2_jaz PF12171.8 27 ZNF714-202 - 555 1.4e-16 60.3 82.4 1 13 6.2 4.5e+03 -1.9 0.1 7 12 119 124 118 124 0.85 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF714-202 - 555 1.4e-16 60.3 82.4 2 13 0.00095 0.68 10.3 0.6 4 21 175 192 172 193 0.87 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF714-202 - 555 1.4e-16 60.3 82.4 3 13 6.3e-05 0.045 14.0 0.2 2 21 201 220 200 220 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF714-202 - 555 1.4e-16 60.3 82.4 4 13 0.014 10 6.5 0.6 2 20 229 247 228 248 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF714-202 - 555 1.4e-16 60.3 82.4 5 13 0.00011 0.082 13.2 0.1 2 21 257 276 256 276 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF714-202 - 555 1.4e-16 60.3 82.4 6 13 0.0052 3.7 7.9 1.2 2 15 285 298 284 304 0.77 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF714-202 - 555 1.4e-16 60.3 82.4 7 13 0.0038 2.8 8.4 0.2 2 22 313 333 312 333 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF714-202 - 555 1.4e-16 60.3 82.4 8 13 0.02 14 6.1 0.2 2 20 341 359 340 360 0.87 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF714-202 - 555 1.4e-16 60.3 82.4 9 13 0.0075 5.4 7.4 0.4 2 20 369 387 368 388 0.88 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF714-202 - 555 1.4e-16 60.3 82.4 10 13 0.0019 1.4 9.3 0.3 2 21 397 416 396 417 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF714-202 - 555 1.4e-16 60.3 82.4 11 13 0.00016 0.12 12.7 0.2 2 22 425 445 424 445 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF714-202 - 555 1.4e-16 60.3 82.4 12 13 0.00042 0.3 11.4 0.2 2 20 453 471 452 472 0.95 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF714-202 - 555 1.4e-16 60.3 82.4 13 13 0.00068 0.49 10.8 0.4 2 22 481 501 480 501 0.94 Zinc-finger double-stranded RNA-binding zf_UBZ PF18439.1 32 ZNF714-202 - 555 7e-16 57.5 61.8 1 13 0.28 2e+02 1.7 0.8 3 12 145 154 143 163 0.87 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF714-202 - 555 7e-16 57.5 61.8 2 13 0.0028 2 8.1 0.2 1 14 171 184 171 192 0.81 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF714-202 - 555 7e-16 57.5 61.8 3 13 0.0017 1.2 8.8 0.4 3 20 201 219 199 220 0.87 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF714-202 - 555 7e-16 57.5 61.8 4 13 0.0043 3.1 7.5 0.5 3 20 229 247 227 248 0.80 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF714-202 - 555 7e-16 57.5 61.8 5 13 0.0019 1.3 8.6 0.2 3 20 257 275 255 276 0.87 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF714-202 - 555 7e-16 57.5 61.8 6 13 0.026 19 5.0 0.2 3 12 285 294 283 301 0.86 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF714-202 - 555 7e-16 57.5 61.8 7 13 0.0082 5.9 6.6 0.1 2 12 312 322 311 332 0.82 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF714-202 - 555 7e-16 57.5 61.8 8 13 0.0015 1 9.0 0.2 3 20 341 359 339 360 0.83 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF714-202 - 555 7e-16 57.5 61.8 9 13 0.0023 1.7 8.3 0.2 3 17 369 383 367 388 0.81 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF714-202 - 555 7e-16 57.5 61.8 10 13 0.0026 1.9 8.2 0.2 3 20 397 415 395 416 0.80 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF714-202 - 555 7e-16 57.5 61.8 11 13 0.002 1.4 8.5 0.1 3 20 425 443 423 444 0.83 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF714-202 - 555 7e-16 57.5 61.8 12 13 0.0031 2.2 7.9 0.1 3 20 453 471 451 472 0.80 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF714-202 - 555 7e-16 57.5 61.8 13 13 0.0012 0.88 9.2 0.2 2 17 480 496 479 500 0.79 Ubiquitin-Binding Zinc Finger Zn-ribbon_8 PF09723.10 40 ZNF714-202 - 555 5.2e-14 52.1 80.6 1 13 0.15 1.1e+02 3.0 0.7 6 15 145 154 144 165 0.83 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF714-202 - 555 5.2e-14 52.1 80.6 2 13 0.0066 4.8 7.4 7.2 6 34 173 208 172 208 0.69 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF714-202 - 555 5.2e-14 52.1 80.6 3 13 0.0011 0.81 9.8 6.9 6 34 201 236 200 239 0.89 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF714-202 - 555 5.2e-14 52.1 80.6 4 13 0.011 7.8 6.7 7.5 6 34 229 264 228 266 0.78 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF714-202 - 555 5.2e-14 52.1 80.6 5 13 0.0098 7 6.9 7.1 6 37 257 295 256 297 0.75 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF714-202 - 555 5.2e-14 52.1 80.6 6 13 0.0099 7.1 6.8 1.1 6 19 285 298 284 305 0.88 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF714-202 - 555 5.2e-14 52.1 80.6 7 13 7.5e-05 0.054 13.6 5.0 6 34 313 348 312 353 0.88 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF714-202 - 555 5.2e-14 52.1 80.6 8 13 0.0001 0.073 13.2 5.7 6 34 341 376 340 379 0.87 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF714-202 - 555 5.2e-14 52.1 80.6 9 13 7e-05 0.05 13.7 5.7 6 35 369 405 368 408 0.90 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF714-202 - 555 5.2e-14 52.1 80.6 10 13 0.0028 2 8.6 0.7 6 17 397 408 396 419 0.82 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF714-202 - 555 5.2e-14 52.1 80.6 11 13 0.00012 0.089 12.9 6.0 6 38 425 464 424 465 0.84 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF714-202 - 555 5.2e-14 52.1 80.6 12 13 0.0032 2.3 8.4 0.6 6 17 453 464 452 472 0.85 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF714-202 - 555 5.2e-14 52.1 80.6 13 13 0.0011 0.8 9.9 0.1 6 18 481 493 480 508 0.81 Zinc ribbon domain zf-C2H2_11 PF16622.5 29 ZNF714-202 - 555 3.8e-10 39.3 49.9 1 14 7.2 5.1e+03 -2.7 0.0 17 23 69 75 69 78 0.84 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF714-202 - 555 3.8e-10 39.3 49.9 2 14 2.8 2e+03 -1.4 2.6 5 26 145 166 142 167 0.86 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF714-202 - 555 3.8e-10 39.3 49.9 3 14 0.01 7.2 6.5 0.2 2 24 170 192 169 195 0.83 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF714-202 - 555 3.8e-10 39.3 49.9 4 14 0.086 62 3.5 0.1 5 24 201 220 198 223 0.77 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF714-202 - 555 3.8e-10 39.3 49.9 5 14 0.13 94 2.9 0.1 5 14 229 238 226 250 0.77 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF714-202 - 555 3.8e-10 39.3 49.9 6 14 0.0075 5.4 6.9 0.0 5 26 257 278 254 280 0.93 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF714-202 - 555 3.8e-10 39.3 49.9 7 14 1.8 1.3e+03 -0.7 0.1 5 25 285 305 283 307 0.72 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF714-202 - 555 3.8e-10 39.3 49.9 8 14 0.0012 0.89 9.4 0.1 3 26 311 334 310 335 0.92 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF714-202 - 555 3.8e-10 39.3 49.9 9 14 0.052 37 4.2 0.1 5 25 341 361 338 363 0.79 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF714-202 - 555 3.8e-10 39.3 49.9 10 14 0.11 78 3.2 0.1 5 19 369 383 366 391 0.72 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF714-202 - 555 3.8e-10 39.3 49.9 11 14 0.0061 4.4 7.2 0.0 5 26 397 418 394 419 0.90 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF714-202 - 555 3.8e-10 39.3 49.9 12 14 0.074 53 3.7 0.2 5 26 425 446 424 447 0.82 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF714-202 - 555 3.8e-10 39.3 49.9 13 14 0.0083 5.9 6.7 0.0 5 26 453 474 450 475 0.90 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF714-202 - 555 3.8e-10 39.3 49.9 14 14 0.0002 0.14 11.9 0.1 3 26 479 502 478 503 0.93 zinc-finger C2H2-type # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF714-202.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF714-202.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF714-202.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF714-202.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF714-202.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:13:17 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF714-203.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF714-203.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF714-203.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF714-203.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF714-203.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:13:17 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF714-204.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF714-204.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF714-204.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF714-204.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF714-204.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:13:17 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZNF714-205 - 555 1.4e-95 309.8 125.6 1 15 7 5.1e+03 -1.8 0.2 2 23 72 101 72 103 0.47 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF714-205 - 555 1.4e-95 309.8 125.6 2 15 1.2 8.3e+02 0.7 0.3 10 24 112 126 110 128 0.85 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF714-205 - 555 1.4e-95 309.8 125.6 3 15 1.3e-08 9.4e-06 25.8 3.5 3 24 133 154 131 154 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF714-205 - 555 1.4e-95 309.8 125.6 4 15 4.1e-07 0.0003 21.1 3.0 3 26 161 184 159 184 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF714-205 - 555 1.4e-95 309.8 125.6 5 15 2.3e-12 1.7e-09 37.7 4.2 2 26 188 212 187 212 0.97 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF714-205 - 555 1.4e-95 309.8 125.6 6 15 6e-09 4.3e-06 26.9 2.4 2 25 216 239 215 240 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF714-205 - 555 1.4e-95 309.8 125.6 7 15 1.7e-09 1.2e-06 28.7 3.6 1 26 243 268 243 268 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF714-205 - 555 1.4e-95 309.8 125.6 8 15 7.4e-08 5.3e-05 23.4 1.7 1 25 271 295 271 296 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF714-205 - 555 1.4e-95 309.8 125.6 9 15 3e-08 2.2e-05 24.7 0.8 2 25 300 323 299 323 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF714-205 - 555 1.4e-95 309.8 125.6 10 15 1.3e-11 9e-09 35.4 1.7 2 25 328 351 327 351 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF714-205 - 555 1.4e-95 309.8 125.6 11 15 6.9e-10 4.9e-07 29.9 3.9 1 26 355 380 355 380 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF714-205 - 555 1.4e-95 309.8 125.6 12 15 2.3e-10 1.7e-07 31.4 0.5 2 25 384 407 383 408 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF714-205 - 555 1.4e-95 309.8 125.6 13 15 1e-10 7.4e-08 32.5 0.7 1 25 411 435 411 436 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF714-205 - 555 1.4e-95 309.8 125.6 14 15 5.2e-12 3.7e-09 36.6 1.3 1 25 439 463 439 464 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF714-205 - 555 1.4e-95 309.8 125.6 15 15 2.6e-10 1.9e-07 31.2 0.4 1 25 467 491 467 492 0.96 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZNF714-205 - 555 2.4e-68 223.0 114.1 1 14 6.3 4.5e+03 -1.5 0.6 8 19 128 139 119 140 0.79 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF714-205 - 555 2.4e-68 223.0 114.1 2 14 0.0028 2 9.0 8.3 1 23 145 167 145 167 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF714-205 - 555 2.4e-68 223.0 114.1 3 14 1.1e-08 8e-06 26.0 2.2 1 23 173 195 173 195 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF714-205 - 555 2.4e-68 223.0 114.1 4 14 1e-07 7.3e-05 23.0 2.3 1 23 201 223 201 223 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF714-205 - 555 2.4e-68 223.0 114.1 5 14 7.2e-07 0.00052 20.3 3.4 1 23 229 251 229 251 0.95 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF714-205 - 555 2.4e-68 223.0 114.1 6 14 1.7e-07 0.00012 22.3 1.1 1 23 257 279 257 279 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF714-205 - 555 2.4e-68 223.0 114.1 7 14 1.9e-07 0.00013 22.2 1.2 1 23 285 307 285 307 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF714-205 - 555 2.4e-68 223.0 114.1 8 14 2.4e-06 0.0017 18.7 0.9 1 23 313 335 313 335 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF714-205 - 555 2.4e-68 223.0 114.1 9 14 1.1e-07 7.9e-05 22.9 1.3 1 23 341 363 341 363 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF714-205 - 555 2.4e-68 223.0 114.1 10 14 2.1e-07 0.00015 22.0 1.0 1 23 369 391 369 391 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF714-205 - 555 2.4e-68 223.0 114.1 11 14 5.4e-09 3.9e-06 27.0 0.4 1 23 397 419 397 419 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF714-205 - 555 2.4e-68 223.0 114.1 12 14 1.2e-09 8.8e-07 29.1 0.9 1 23 425 447 425 447 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF714-205 - 555 2.4e-68 223.0 114.1 13 14 7e-09 5e-06 26.7 0.4 1 23 453 475 453 475 0.95 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF714-205 - 555 2.4e-68 223.0 114.1 14 14 4.5e-08 3.2e-05 24.1 0.4 1 21 481 501 481 502 0.96 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZNF714-205 - 555 4.7e-32 107.9 99.2 1 13 0.015 11 7.2 6.3 1 23 145 167 145 168 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF714-205 - 555 4.7e-32 107.9 99.2 2 13 1.3e-05 0.0093 16.7 1.7 1 23 173 195 173 196 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF714-205 - 555 4.7e-32 107.9 99.2 3 13 0.00028 0.2 12.6 1.8 1 23 201 223 201 224 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF714-205 - 555 4.7e-32 107.9 99.2 4 13 0.0074 5.3 8.2 2.8 1 23 229 251 229 252 0.86 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF714-205 - 555 4.7e-32 107.9 99.2 5 13 0.00021 0.15 12.9 0.9 1 23 257 279 257 280 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF714-205 - 555 4.7e-32 107.9 99.2 6 13 0.00028 0.2 12.6 0.9 1 23 285 307 285 308 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF714-205 - 555 4.7e-32 107.9 99.2 7 13 0.00011 0.08 13.8 0.8 1 23 313 335 313 336 0.91 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF714-205 - 555 4.7e-32 107.9 99.2 8 13 0.00017 0.12 13.3 1.1 1 23 341 363 341 364 0.91 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF714-205 - 555 4.7e-32 107.9 99.2 9 13 0.00064 0.46 11.5 0.8 1 23 369 391 369 392 0.90 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF714-205 - 555 4.7e-32 107.9 99.2 10 13 3e-05 0.022 15.6 0.4 1 23 397 419 397 420 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF714-205 - 555 4.7e-32 107.9 99.2 11 13 1.3e-05 0.009 16.8 0.6 1 23 425 447 425 448 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF714-205 - 555 4.7e-32 107.9 99.2 12 13 0.00019 0.14 13.1 0.3 1 19 453 471 453 475 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF714-205 - 555 4.7e-32 107.9 99.2 13 13 3.7e-05 0.027 15.3 0.3 1 21 481 501 481 503 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF714-205 - 555 3.8e-21 74.6 100.9 1 13 0.057 41 4.3 4.8 2 24 145 167 145 170 0.87 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF714-205 - 555 3.8e-21 74.6 100.9 2 13 2.9e-05 0.021 14.8 1.0 2 24 173 195 172 198 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF714-205 - 555 3.8e-21 74.6 100.9 3 13 0.01 7.3 6.7 2.2 2 21 201 220 201 223 0.85 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF714-205 - 555 3.8e-21 74.6 100.9 4 13 0.039 28 4.9 1.7 2 11 229 238 229 251 0.80 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF714-205 - 555 3.8e-21 74.6 100.9 5 13 0.00013 0.092 12.8 1.3 2 24 257 280 257 283 0.88 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF714-205 - 555 3.8e-21 74.6 100.9 6 13 4.4e-05 0.032 14.2 0.9 2 24 285 307 285 310 0.92 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF714-205 - 555 3.8e-21 74.6 100.9 7 13 0.0033 2.3 8.3 1.1 2 24 313 335 312 338 0.88 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF714-205 - 555 3.8e-21 74.6 100.9 8 13 0.0054 3.9 7.6 1.2 2 21 341 360 341 363 0.82 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF714-205 - 555 3.8e-21 74.6 100.9 9 13 0.0078 5.6 7.1 0.8 2 12 369 379 369 392 0.82 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF714-205 - 555 3.8e-21 74.6 100.9 10 13 5.9e-05 0.043 13.8 0.8 2 24 397 419 397 422 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF714-205 - 555 3.8e-21 74.6 100.9 11 13 1.9e-06 0.0014 18.6 0.6 2 24 425 447 424 450 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF714-205 - 555 3.8e-21 74.6 100.9 12 13 3.6e-05 0.026 14.5 0.4 2 24 453 475 453 478 0.92 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF714-205 - 555 3.8e-21 74.6 100.9 13 13 0.0013 0.91 9.6 0.8 2 22 481 501 480 502 0.88 C2H2-type zinc finger XPA_N PF01286.18 32 ZNF714-205 - 555 1.3e-17 63.5 64.7 1 13 2.5 1.8e+03 -0.9 3.7 3 12 146 155 144 156 0.88 XPA protein N-terminal XPA_N PF01286.18 32 ZNF714-205 - 555 1.3e-17 63.5 64.7 2 13 0.12 87 3.3 0.7 3 12 174 183 173 185 0.87 XPA protein N-terminal XPA_N PF01286.18 32 ZNF714-205 - 555 1.3e-17 63.5 64.7 3 13 0.0008 0.58 10.3 0.2 3 14 202 213 200 220 0.86 XPA protein N-terminal XPA_N PF01286.18 32 ZNF714-205 - 555 1.3e-17 63.5 64.7 4 13 0.0018 1.3 9.1 0.1 3 17 230 244 228 249 0.79 XPA protein N-terminal XPA_N PF01286.18 32 ZNF714-205 - 555 1.3e-17 63.5 64.7 5 13 0.0062 4.4 7.4 0.1 3 12 258 267 256 274 0.90 XPA protein N-terminal XPA_N PF01286.18 32 ZNF714-205 - 555 1.3e-17 63.5 64.7 6 13 0.003 2.2 8.4 0.3 3 18 286 302 284 303 0.79 XPA protein N-terminal XPA_N PF01286.18 32 ZNF714-205 - 555 1.3e-17 63.5 64.7 7 13 0.03 21 5.2 0.1 3 14 314 325 313 330 0.86 XPA protein N-terminal XPA_N PF01286.18 32 ZNF714-205 - 555 1.3e-17 63.5 64.7 8 13 0.00085 0.61 10.2 0.1 3 15 342 354 340 360 0.82 XPA protein N-terminal XPA_N PF01286.18 32 ZNF714-205 - 555 1.3e-17 63.5 64.7 9 13 0.0014 1 9.5 0.2 3 14 370 381 368 385 0.88 XPA protein N-terminal XPA_N PF01286.18 32 ZNF714-205 - 555 1.3e-17 63.5 64.7 10 13 0.00071 0.51 10.4 0.2 3 14 398 409 396 415 0.89 XPA protein N-terminal XPA_N PF01286.18 32 ZNF714-205 - 555 1.3e-17 63.5 64.7 11 13 0.0016 1.1 9.3 0.1 3 14 426 437 425 443 0.88 XPA protein N-terminal XPA_N PF01286.18 32 ZNF714-205 - 555 1.3e-17 63.5 64.7 12 13 0.0014 0.99 9.5 0.1 3 14 454 465 452 471 0.88 XPA protein N-terminal XPA_N PF01286.18 32 ZNF714-205 - 555 1.3e-17 63.5 64.7 13 13 0.00084 0.6 10.2 0.3 3 14 482 493 481 499 0.89 XPA protein N-terminal zf-C2H2_jaz PF12171.8 27 ZNF714-205 - 555 1.4e-16 60.3 82.4 1 13 6.2 4.5e+03 -1.9 0.1 7 12 119 124 118 124 0.85 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF714-205 - 555 1.4e-16 60.3 82.4 2 13 0.00095 0.68 10.3 0.6 4 21 175 192 172 193 0.87 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF714-205 - 555 1.4e-16 60.3 82.4 3 13 6.3e-05 0.045 14.0 0.2 2 21 201 220 200 220 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF714-205 - 555 1.4e-16 60.3 82.4 4 13 0.014 10 6.5 0.6 2 20 229 247 228 248 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF714-205 - 555 1.4e-16 60.3 82.4 5 13 0.00011 0.082 13.2 0.1 2 21 257 276 256 276 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF714-205 - 555 1.4e-16 60.3 82.4 6 13 0.0052 3.7 7.9 1.2 2 15 285 298 284 304 0.77 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF714-205 - 555 1.4e-16 60.3 82.4 7 13 0.0038 2.8 8.4 0.2 2 22 313 333 312 333 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF714-205 - 555 1.4e-16 60.3 82.4 8 13 0.02 14 6.1 0.2 2 20 341 359 340 360 0.87 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF714-205 - 555 1.4e-16 60.3 82.4 9 13 0.0075 5.4 7.4 0.4 2 20 369 387 368 388 0.88 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF714-205 - 555 1.4e-16 60.3 82.4 10 13 0.0019 1.4 9.3 0.3 2 21 397 416 396 417 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF714-205 - 555 1.4e-16 60.3 82.4 11 13 0.00016 0.12 12.7 0.2 2 22 425 445 424 445 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF714-205 - 555 1.4e-16 60.3 82.4 12 13 0.00042 0.3 11.4 0.2 2 20 453 471 452 472 0.95 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF714-205 - 555 1.4e-16 60.3 82.4 13 13 0.00068 0.49 10.8 0.4 2 22 481 501 480 501 0.94 Zinc-finger double-stranded RNA-binding zf_UBZ PF18439.1 32 ZNF714-205 - 555 7e-16 57.5 61.8 1 13 0.28 2e+02 1.7 0.8 3 12 145 154 143 163 0.87 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF714-205 - 555 7e-16 57.5 61.8 2 13 0.0028 2 8.1 0.2 1 14 171 184 171 192 0.81 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF714-205 - 555 7e-16 57.5 61.8 3 13 0.0017 1.2 8.8 0.4 3 20 201 219 199 220 0.87 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF714-205 - 555 7e-16 57.5 61.8 4 13 0.0043 3.1 7.5 0.5 3 20 229 247 227 248 0.80 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF714-205 - 555 7e-16 57.5 61.8 5 13 0.0019 1.3 8.6 0.2 3 20 257 275 255 276 0.87 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF714-205 - 555 7e-16 57.5 61.8 6 13 0.026 19 5.0 0.2 3 12 285 294 283 301 0.86 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF714-205 - 555 7e-16 57.5 61.8 7 13 0.0082 5.9 6.6 0.1 2 12 312 322 311 332 0.82 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF714-205 - 555 7e-16 57.5 61.8 8 13 0.0015 1 9.0 0.2 3 20 341 359 339 360 0.83 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF714-205 - 555 7e-16 57.5 61.8 9 13 0.0023 1.7 8.3 0.2 3 17 369 383 367 388 0.81 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF714-205 - 555 7e-16 57.5 61.8 10 13 0.0026 1.9 8.2 0.2 3 20 397 415 395 416 0.80 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF714-205 - 555 7e-16 57.5 61.8 11 13 0.002 1.4 8.5 0.1 3 20 425 443 423 444 0.83 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF714-205 - 555 7e-16 57.5 61.8 12 13 0.0031 2.2 7.9 0.1 3 20 453 471 451 472 0.80 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF714-205 - 555 7e-16 57.5 61.8 13 13 0.0012 0.88 9.2 0.2 2 17 480 496 479 500 0.79 Ubiquitin-Binding Zinc Finger Zn-ribbon_8 PF09723.10 40 ZNF714-205 - 555 5.2e-14 52.1 80.6 1 13 0.15 1.1e+02 3.0 0.7 6 15 145 154 144 165 0.83 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF714-205 - 555 5.2e-14 52.1 80.6 2 13 0.0066 4.8 7.4 7.2 6 34 173 208 172 208 0.69 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF714-205 - 555 5.2e-14 52.1 80.6 3 13 0.0011 0.81 9.8 6.9 6 34 201 236 200 239 0.89 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF714-205 - 555 5.2e-14 52.1 80.6 4 13 0.011 7.8 6.7 7.5 6 34 229 264 228 266 0.78 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF714-205 - 555 5.2e-14 52.1 80.6 5 13 0.0098 7 6.9 7.1 6 37 257 295 256 297 0.75 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF714-205 - 555 5.2e-14 52.1 80.6 6 13 0.0099 7.1 6.8 1.1 6 19 285 298 284 305 0.88 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF714-205 - 555 5.2e-14 52.1 80.6 7 13 7.5e-05 0.054 13.6 5.0 6 34 313 348 312 353 0.88 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF714-205 - 555 5.2e-14 52.1 80.6 8 13 0.0001 0.073 13.2 5.7 6 34 341 376 340 379 0.87 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF714-205 - 555 5.2e-14 52.1 80.6 9 13 7e-05 0.05 13.7 5.7 6 35 369 405 368 408 0.90 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF714-205 - 555 5.2e-14 52.1 80.6 10 13 0.0028 2 8.6 0.7 6 17 397 408 396 419 0.82 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF714-205 - 555 5.2e-14 52.1 80.6 11 13 0.00012 0.089 12.9 6.0 6 38 425 464 424 465 0.84 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF714-205 - 555 5.2e-14 52.1 80.6 12 13 0.0032 2.3 8.4 0.6 6 17 453 464 452 472 0.85 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF714-205 - 555 5.2e-14 52.1 80.6 13 13 0.0011 0.8 9.9 0.1 6 18 481 493 480 508 0.81 Zinc ribbon domain zf-C2H2_11 PF16622.5 29 ZNF714-205 - 555 3.8e-10 39.3 49.9 1 14 7.2 5.1e+03 -2.7 0.0 17 23 69 75 69 78 0.84 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF714-205 - 555 3.8e-10 39.3 49.9 2 14 2.8 2e+03 -1.4 2.6 5 26 145 166 142 167 0.86 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF714-205 - 555 3.8e-10 39.3 49.9 3 14 0.01 7.2 6.5 0.2 2 24 170 192 169 195 0.83 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF714-205 - 555 3.8e-10 39.3 49.9 4 14 0.086 62 3.5 0.1 5 24 201 220 198 223 0.77 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF714-205 - 555 3.8e-10 39.3 49.9 5 14 0.13 94 2.9 0.1 5 14 229 238 226 250 0.77 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF714-205 - 555 3.8e-10 39.3 49.9 6 14 0.0075 5.4 6.9 0.0 5 26 257 278 254 280 0.93 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF714-205 - 555 3.8e-10 39.3 49.9 7 14 1.8 1.3e+03 -0.7 0.1 5 25 285 305 283 307 0.72 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF714-205 - 555 3.8e-10 39.3 49.9 8 14 0.0012 0.89 9.4 0.1 3 26 311 334 310 335 0.92 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF714-205 - 555 3.8e-10 39.3 49.9 9 14 0.052 37 4.2 0.1 5 25 341 361 338 363 0.79 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF714-205 - 555 3.8e-10 39.3 49.9 10 14 0.11 78 3.2 0.1 5 19 369 383 366 391 0.72 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF714-205 - 555 3.8e-10 39.3 49.9 11 14 0.0061 4.4 7.2 0.0 5 26 397 418 394 419 0.90 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF714-205 - 555 3.8e-10 39.3 49.9 12 14 0.074 53 3.7 0.2 5 26 425 446 424 447 0.82 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF714-205 - 555 3.8e-10 39.3 49.9 13 14 0.0083 5.9 6.7 0.0 5 26 453 474 450 475 0.90 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF714-205 - 555 3.8e-10 39.3 49.9 14 14 0.0002 0.14 11.9 0.1 3 26 479 502 478 503 0.93 zinc-finger C2H2-type # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF714-205.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF714-205.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF714-205.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF714-205.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF714-205.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:13:18 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZNF714-206 - 519 4.3e-96 311.4 125.6 1 15 6.2 4.7e+03 -1.7 0.2 2 23 36 65 36 67 0.47 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF714-206 - 519 4.3e-96 311.4 125.6 2 15 1 7.7e+02 0.8 0.3 10 24 76 90 74 92 0.85 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF714-206 - 519 4.3e-96 311.4 125.6 3 15 1.2e-08 8.7e-06 25.9 3.5 3 24 97 118 95 118 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF714-206 - 519 4.3e-96 311.4 125.6 4 15 3.7e-07 0.00027 21.2 3.0 3 26 125 148 123 148 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF714-206 - 519 4.3e-96 311.4 125.6 5 15 2.1e-12 1.5e-09 37.8 4.2 2 26 152 176 151 176 0.97 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF714-206 - 519 4.3e-96 311.4 125.6 6 15 5.3e-09 4e-06 27.0 2.4 2 25 180 203 179 204 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF714-206 - 519 4.3e-96 311.4 125.6 7 15 1.5e-09 1.1e-06 28.8 3.6 1 26 207 232 207 232 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF714-206 - 519 4.3e-96 311.4 125.6 8 15 6.6e-08 4.9e-05 23.6 1.7 1 25 235 259 235 260 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF714-206 - 519 4.3e-96 311.4 125.6 9 15 2.7e-08 2e-05 24.8 0.8 2 25 264 287 263 287 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF714-206 - 519 4.3e-96 311.4 125.6 10 15 1.1e-11 8.3e-09 35.5 1.7 2 25 292 315 291 315 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF714-206 - 519 4.3e-96 311.4 125.6 11 15 6.1e-10 4.5e-07 30.0 3.9 1 26 319 344 319 344 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF714-206 - 519 4.3e-96 311.4 125.6 12 15 2e-10 1.5e-07 31.5 0.5 2 25 348 371 347 372 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF714-206 - 519 4.3e-96 311.4 125.6 13 15 9.2e-11 6.9e-08 32.6 0.7 1 25 375 399 375 400 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF714-206 - 519 4.3e-96 311.4 125.6 14 15 4.6e-12 3.4e-09 36.7 1.3 1 25 403 427 403 428 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF714-206 - 519 4.3e-96 311.4 125.6 15 15 2.3e-10 1.7e-07 31.3 0.4 1 25 431 455 431 456 0.96 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZNF714-206 - 519 7.2e-69 224.6 114.1 1 14 5.6 4.2e+03 -1.4 0.6 8 19 92 103 83 104 0.79 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF714-206 - 519 7.2e-69 224.6 114.1 2 14 0.0025 1.8 9.1 8.3 1 23 109 131 109 131 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF714-206 - 519 7.2e-69 224.6 114.1 3 14 9.9e-09 7.4e-06 26.1 2.2 1 23 137 159 137 159 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF714-206 - 519 7.2e-69 224.6 114.1 4 14 9e-08 6.8e-05 23.1 2.3 1 23 165 187 165 187 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF714-206 - 519 7.2e-69 224.6 114.1 5 14 6.4e-07 0.00048 20.4 3.4 1 23 193 215 193 215 0.95 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF714-206 - 519 7.2e-69 224.6 114.1 6 14 1.5e-07 0.00011 22.4 1.1 1 23 221 243 221 243 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF714-206 - 519 7.2e-69 224.6 114.1 7 14 1.6e-07 0.00012 22.3 1.2 1 23 249 271 249 271 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF714-206 - 519 7.2e-69 224.6 114.1 8 14 2.2e-06 0.0016 18.8 0.9 1 23 277 299 277 299 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF714-206 - 519 7.2e-69 224.6 114.1 9 14 9.7e-08 7.3e-05 23.0 1.3 1 23 305 327 305 327 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF714-206 - 519 7.2e-69 224.6 114.1 10 14 1.8e-07 0.00014 22.2 1.0 1 23 333 355 333 355 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF714-206 - 519 7.2e-69 224.6 114.1 11 14 4.8e-09 3.6e-06 27.1 0.4 1 23 361 383 361 383 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF714-206 - 519 7.2e-69 224.6 114.1 12 14 1.1e-09 8.1e-07 29.2 0.9 1 23 389 411 389 411 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF714-206 - 519 7.2e-69 224.6 114.1 13 14 6.2e-09 4.6e-06 26.8 0.4 1 23 417 439 417 439 0.95 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF714-206 - 519 7.2e-69 224.6 114.1 14 14 4e-08 3e-05 24.2 0.4 1 21 445 465 445 466 0.96 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZNF714-206 - 519 1.5e-32 109.5 99.2 1 13 0.013 9.7 7.3 6.3 1 23 109 131 109 132 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF714-206 - 519 1.5e-32 109.5 99.2 2 13 1.1e-05 0.0086 16.8 1.7 1 23 137 159 137 160 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF714-206 - 519 1.5e-32 109.5 99.2 3 13 0.00025 0.19 12.7 1.8 1 23 165 187 165 188 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF714-206 - 519 1.5e-32 109.5 99.2 4 13 0.0066 4.9 8.3 2.8 1 23 193 215 193 216 0.86 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF714-206 - 519 1.5e-32 109.5 99.2 5 13 0.00019 0.14 13.0 0.9 1 23 221 243 221 244 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF714-206 - 519 1.5e-32 109.5 99.2 6 13 0.00025 0.19 12.7 0.9 1 23 249 271 249 272 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF714-206 - 519 1.5e-32 109.5 99.2 7 13 9.8e-05 0.074 13.9 0.8 1 23 277 299 277 300 0.91 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF714-206 - 519 1.5e-32 109.5 99.2 8 13 0.00015 0.11 13.4 1.1 1 23 305 327 305 328 0.91 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF714-206 - 519 1.5e-32 109.5 99.2 9 13 0.00057 0.43 11.6 0.8 1 23 333 355 333 356 0.90 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF714-206 - 519 1.5e-32 109.5 99.2 10 13 2.7e-05 0.02 15.7 0.4 1 23 361 383 361 384 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF714-206 - 519 1.5e-32 109.5 99.2 11 13 1.1e-05 0.0083 16.9 0.6 1 23 389 411 389 412 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF714-206 - 519 1.5e-32 109.5 99.2 12 13 0.00017 0.13 13.2 0.3 1 19 417 435 417 439 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF714-206 - 519 1.5e-32 109.5 99.2 13 13 3.3e-05 0.025 15.4 0.3 1 21 445 465 445 467 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF714-206 - 519 1.3e-21 76.0 100.9 1 13 0.05 38 4.4 4.8 2 24 109 131 109 134 0.87 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF714-206 - 519 1.3e-21 76.0 100.9 2 13 2.6e-05 0.019 14.9 1.0 2 24 137 159 136 162 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF714-206 - 519 1.3e-21 76.0 100.9 3 13 0.0091 6.8 6.8 2.2 2 21 165 184 165 187 0.85 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF714-206 - 519 1.3e-21 76.0 100.9 4 13 0.035 26 5.0 1.7 2 11 193 202 193 215 0.80 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF714-206 - 519 1.3e-21 76.0 100.9 5 13 0.00011 0.085 12.9 1.3 2 24 221 244 221 247 0.88 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF714-206 - 519 1.3e-21 76.0 100.9 6 13 3.9e-05 0.029 14.4 0.9 2 24 249 271 249 274 0.92 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF714-206 - 519 1.3e-21 76.0 100.9 7 13 0.0029 2.2 8.4 1.2 2 24 277 299 276 302 0.88 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF714-206 - 519 1.3e-21 76.0 100.9 8 13 0.0048 3.6 7.7 1.2 2 21 305 324 305 327 0.82 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF714-206 - 519 1.3e-21 76.0 100.9 9 13 0.0069 5.2 7.2 0.8 2 12 333 343 333 356 0.82 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF714-206 - 519 1.3e-21 76.0 100.9 10 13 5.3e-05 0.039 14.0 0.8 2 24 361 383 361 386 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF714-206 - 519 1.3e-21 76.0 100.9 11 13 1.7e-06 0.0013 18.7 0.6 2 24 389 411 388 414 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF714-206 - 519 1.3e-21 76.0 100.9 12 13 3.2e-05 0.024 14.7 0.4 2 24 417 439 417 442 0.92 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF714-206 - 519 1.3e-21 76.0 100.9 13 13 0.0011 0.84 9.7 0.8 2 22 445 465 444 466 0.88 C2H2-type zinc finger XPA_N PF01286.18 32 ZNF714-206 - 519 4.6e-18 64.9 64.7 1 13 2.3 1.7e+03 -0.8 3.7 3 12 110 119 108 120 0.88 XPA protein N-terminal XPA_N PF01286.18 32 ZNF714-206 - 519 4.6e-18 64.9 64.7 2 13 0.11 81 3.4 0.7 3 12 138 147 137 149 0.87 XPA protein N-terminal XPA_N PF01286.18 32 ZNF714-206 - 519 4.6e-18 64.9 64.7 3 13 0.00071 0.53 10.4 0.2 3 14 166 177 164 184 0.86 XPA protein N-terminal XPA_N PF01286.18 32 ZNF714-206 - 519 4.6e-18 64.9 64.7 4 13 0.0016 1.2 9.2 0.1 3 17 194 208 192 213 0.79 XPA protein N-terminal XPA_N PF01286.18 32 ZNF714-206 - 519 4.6e-18 64.9 64.7 5 13 0.0055 4.1 7.5 0.1 3 12 222 231 220 238 0.90 XPA protein N-terminal XPA_N PF01286.18 32 ZNF714-206 - 519 4.6e-18 64.9 64.7 6 13 0.0027 2 8.5 0.3 3 18 250 266 248 267 0.79 XPA protein N-terminal XPA_N PF01286.18 32 ZNF714-206 - 519 4.6e-18 64.9 64.7 7 13 0.027 20 5.3 0.1 3 14 278 289 277 294 0.86 XPA protein N-terminal XPA_N PF01286.18 32 ZNF714-206 - 519 4.6e-18 64.9 64.7 8 13 0.00076 0.57 10.3 0.1 3 15 306 318 304 324 0.82 XPA protein N-terminal XPA_N PF01286.18 32 ZNF714-206 - 519 4.6e-18 64.9 64.7 9 13 0.0013 0.94 9.6 0.2 3 14 334 345 332 349 0.88 XPA protein N-terminal XPA_N PF01286.18 32 ZNF714-206 - 519 4.6e-18 64.9 64.7 10 13 0.00064 0.47 10.5 0.2 3 14 362 373 360 379 0.89 XPA protein N-terminal XPA_N PF01286.18 32 ZNF714-206 - 519 4.6e-18 64.9 64.7 11 13 0.0014 1.1 9.4 0.1 3 14 390 401 389 407 0.88 XPA protein N-terminal XPA_N PF01286.18 32 ZNF714-206 - 519 4.6e-18 64.9 64.7 12 13 0.0012 0.92 9.6 0.1 3 14 418 429 416 435 0.88 XPA protein N-terminal XPA_N PF01286.18 32 ZNF714-206 - 519 4.6e-18 64.9 64.7 13 13 0.00075 0.56 10.3 0.3 3 14 446 457 445 463 0.89 XPA protein N-terminal zf-C2H2_jaz PF12171.8 27 ZNF714-206 - 519 5.1e-17 61.7 82.4 1 13 5.6 4.2e+03 -1.8 0.1 7 12 83 88 82 88 0.85 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF714-206 - 519 5.1e-17 61.7 82.4 2 13 0.00085 0.63 10.4 0.6 4 21 139 156 136 157 0.87 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF714-206 - 519 5.1e-17 61.7 82.4 3 13 5.6e-05 0.042 14.1 0.2 2 21 165 184 164 184 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF714-206 - 519 5.1e-17 61.7 82.4 4 13 0.013 9.4 6.7 0.6 2 20 193 211 192 212 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF714-206 - 519 5.1e-17 61.7 82.4 5 13 0.0001 0.076 13.3 0.1 2 21 221 240 220 240 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF714-206 - 519 5.1e-17 61.7 82.4 6 13 0.0046 3.4 8.1 1.2 2 15 249 262 248 268 0.77 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF714-206 - 519 5.1e-17 61.7 82.4 7 13 0.0034 2.6 8.5 0.2 2 22 277 297 276 297 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF714-206 - 519 5.1e-17 61.7 82.4 8 13 0.018 13 6.2 0.2 2 20 305 323 304 324 0.87 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF714-206 - 519 5.1e-17 61.7 82.4 9 13 0.0067 5 7.5 0.4 2 20 333 351 332 352 0.88 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF714-206 - 519 5.1e-17 61.7 82.4 10 13 0.0017 1.3 9.4 0.3 2 21 361 380 360 381 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF714-206 - 519 5.1e-17 61.7 82.4 11 13 0.00015 0.11 12.8 0.2 2 22 389 409 388 409 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF714-206 - 519 5.1e-17 61.7 82.4 12 13 0.00038 0.28 11.5 0.2 2 20 417 435 416 436 0.95 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF714-206 - 519 5.1e-17 61.7 82.4 13 13 0.0006 0.45 10.9 0.4 2 22 445 465 444 465 0.94 Zinc-finger double-stranded RNA-binding zf_UBZ PF18439.1 32 ZNF714-206 - 519 2.5e-16 58.9 61.8 1 13 0.25 1.9e+02 1.8 0.8 3 12 109 118 107 127 0.87 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF714-206 - 519 2.5e-16 58.9 61.8 2 13 0.0025 1.9 8.2 0.2 1 14 135 148 135 156 0.81 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF714-206 - 519 2.5e-16 58.9 61.8 3 13 0.0015 1.1 8.9 0.4 3 20 165 183 163 184 0.87 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF714-206 - 519 2.5e-16 58.9 61.8 4 13 0.0039 2.9 7.6 0.5 3 20 193 211 191 212 0.80 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF714-206 - 519 2.5e-16 58.9 61.8 5 13 0.0017 1.2 8.7 0.2 3 20 221 239 219 240 0.87 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF714-206 - 519 2.5e-16 58.9 61.8 6 13 0.023 17 5.1 0.2 3 12 249 258 247 265 0.86 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF714-206 - 519 2.5e-16 58.9 61.8 7 13 0.0073 5.5 6.7 0.1 2 12 276 286 275 296 0.82 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF714-206 - 519 2.5e-16 58.9 61.8 8 13 0.0013 0.97 9.1 0.2 3 20 305 323 303 324 0.83 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF714-206 - 519 2.5e-16 58.9 61.8 9 13 0.002 1.5 8.4 0.2 3 17 333 347 331 352 0.81 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF714-206 - 519 2.5e-16 58.9 61.8 10 13 0.0023 1.8 8.3 0.2 3 20 361 379 359 380 0.80 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF714-206 - 519 2.5e-16 58.9 61.8 11 13 0.0018 1.3 8.6 0.1 3 20 389 407 387 408 0.83 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF714-206 - 519 2.5e-16 58.9 61.8 12 13 0.0028 2.1 8.0 0.1 3 20 417 435 415 436 0.80 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF714-206 - 519 2.5e-16 58.9 61.8 13 13 0.0011 0.81 9.3 0.2 2 17 444 460 443 464 0.79 Ubiquitin-Binding Zinc Finger Zn-ribbon_8 PF09723.10 40 ZNF714-206 - 519 2.4e-12 46.7 87.6 1 13 0.14 1e+02 3.1 0.7 6 15 109 118 108 129 0.83 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF714-206 - 519 2.4e-12 46.7 87.6 2 13 0.0036 2.7 8.2 7.2 6 34 137 172 136 174 0.70 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF714-206 - 519 2.4e-12 46.7 87.6 3 13 0.00097 0.73 10.0 6.8 6 34 165 200 164 203 0.89 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF714-206 - 519 2.4e-12 46.7 87.6 4 13 0.008 6 7.1 7.5 6 34 193 228 191 231 0.79 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF714-206 - 519 2.4e-12 46.7 87.6 5 13 0.0081 6.1 7.1 6.7 6 36 221 258 220 260 0.75 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF714-206 - 519 2.4e-12 46.7 87.6 6 13 0.0085 6.3 7.0 1.0 6 19 249 262 248 269 0.88 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF714-206 - 519 2.4e-12 46.7 87.6 7 13 0.00013 0.095 12.8 5.5 6 34 277 312 276 314 0.89 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF714-206 - 519 2.4e-12 46.7 87.6 8 13 0.00022 0.16 12.1 6.0 6 34 305 340 303 340 0.88 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF714-206 - 519 2.4e-12 46.7 87.6 9 13 5.6e-05 0.042 14.0 5.6 6 35 333 369 332 372 0.90 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF714-206 - 519 2.4e-12 46.7 87.6 10 13 0.0025 1.9 8.7 0.6 6 17 361 372 360 382 0.82 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF714-206 - 519 2.4e-12 46.7 87.6 11 13 0.00012 0.088 12.9 6.1 6 38 389 428 388 429 0.84 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF714-206 - 519 2.4e-12 46.7 87.6 12 13 0.0029 2.2 8.5 0.7 6 17 417 428 415 436 0.85 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF714-206 - 519 2.4e-12 46.7 87.6 13 13 0.00099 0.74 10.0 0.1 6 18 445 457 444 472 0.81 Zinc ribbon domain zf-C2H2_11 PF16622.5 29 ZNF714-206 - 519 1.4e-10 40.8 49.9 1 14 6.4 4.8e+03 -2.6 0.0 17 23 33 39 33 42 0.84 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF714-206 - 519 1.4e-10 40.8 49.9 2 14 2.5 1.9e+03 -1.2 2.6 5 26 109 130 106 131 0.86 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF714-206 - 519 1.4e-10 40.8 49.9 3 14 0.0089 6.6 6.6 0.2 2 24 134 156 133 159 0.83 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF714-206 - 519 1.4e-10 40.8 49.9 4 14 0.076 57 3.6 0.1 5 24 165 184 162 187 0.77 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF714-206 - 519 1.4e-10 40.8 49.9 5 14 0.12 87 3.0 0.1 5 14 193 202 190 214 0.77 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF714-206 - 519 1.4e-10 40.8 49.9 6 14 0.0067 5 7.0 0.0 5 26 221 242 218 244 0.93 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF714-206 - 519 1.4e-10 40.8 49.9 7 14 1.6 1.2e+03 -0.6 0.1 5 25 249 269 247 271 0.72 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF714-206 - 519 1.4e-10 40.8 49.9 8 14 0.0011 0.82 9.5 0.1 3 26 275 298 274 299 0.92 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF714-206 - 519 1.4e-10 40.8 49.9 9 14 0.046 34 4.3 0.1 5 25 305 325 302 327 0.79 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF714-206 - 519 1.4e-10 40.8 49.9 10 14 0.097 73 3.3 0.1 5 19 333 347 330 355 0.72 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF714-206 - 519 1.4e-10 40.8 49.9 11 14 0.0054 4 7.3 0.0 5 26 361 382 358 383 0.90 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF714-206 - 519 1.4e-10 40.8 49.9 12 14 0.066 49 3.8 0.2 5 26 389 410 388 411 0.82 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF714-206 - 519 1.4e-10 40.8 49.9 13 14 0.0073 5.5 6.8 0.0 5 26 417 438 414 439 0.90 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF714-206 - 519 1.4e-10 40.8 49.9 14 14 0.00018 0.13 12.0 0.1 3 26 443 466 442 467 0.93 zinc-finger C2H2-type # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF714-206.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF714-206.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF714-206.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF714-206.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF714-206.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:13:19 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF714-207.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF714-207.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF714-207.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF714-207.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF714-207.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:13:19 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF714-208.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF714-208.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF714-208.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF714-208.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF714-208.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:13:19 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- KRAB PF01352.27 42 ZNF714-209 - 51 9.6e-25 86.0 0.4 1 1 6e-29 1.1e-24 85.8 0.4 2 42 4 44 3 44 0.98 KRAB box # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF714-209.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF714-209.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF714-209.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF714-209.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF714-209.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:13:20 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZNF714-210 - 400 9.9e-94 304.0 103.3 1 12 4.3e-07 0.0002 21.6 3.0 3 26 6 29 4 29 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF714-210 - 400 9.9e-94 304.0 103.3 2 12 2.4e-12 1.1e-09 38.2 4.2 2 26 33 57 32 57 0.97 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF714-210 - 400 9.9e-94 304.0 103.3 3 12 6.3e-09 2.9e-06 27.4 2.4 2 25 61 84 60 85 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF714-210 - 400 9.9e-94 304.0 103.3 4 12 1.7e-09 7.9e-07 29.2 3.6 1 26 88 113 88 113 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF714-210 - 400 9.9e-94 304.0 103.3 5 12 7.8e-08 3.6e-05 24.0 1.7 1 25 116 140 116 141 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF714-210 - 400 9.9e-94 304.0 103.3 6 12 3.2e-08 1.5e-05 25.2 0.8 2 25 145 168 144 168 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF714-210 - 400 9.9e-94 304.0 103.3 7 12 1.3e-11 6.1e-09 35.9 1.7 2 25 173 196 172 196 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF714-210 - 400 9.9e-94 304.0 103.3 8 12 7.2e-10 3.3e-07 30.4 3.9 1 26 200 225 200 225 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF714-210 - 400 9.9e-94 304.0 103.3 9 12 2.4e-10 1.1e-07 31.9 0.5 2 25 229 252 228 253 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF714-210 - 400 9.9e-94 304.0 103.3 10 12 1.1e-10 5e-08 33.0 0.7 1 25 256 280 256 281 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF714-210 - 400 9.9e-94 304.0 103.3 11 12 5.4e-12 2.5e-09 37.1 1.3 1 25 284 308 284 309 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF714-210 - 400 9.9e-94 304.0 103.3 12 12 2.7e-10 1.2e-07 31.8 0.4 1 25 312 336 312 337 0.96 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZNF714-210 - 400 2.5e-67 219.7 104.8 1 12 1.2e-08 5.4e-06 26.6 2.2 1 23 18 40 18 40 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF714-210 - 400 2.5e-67 219.7 104.8 2 12 1.1e-07 4.9e-05 23.5 2.3 1 23 46 68 46 68 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF714-210 - 400 2.5e-67 219.7 104.8 3 12 7.6e-07 0.00035 20.9 3.4 1 23 74 96 74 96 0.95 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF714-210 - 400 2.5e-67 219.7 104.8 4 12 1.8e-07 8.1e-05 22.9 1.1 1 23 102 124 102 124 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF714-210 - 400 2.5e-67 219.7 104.8 5 12 2e-07 9e-05 22.7 1.2 1 23 130 152 130 152 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF714-210 - 400 2.5e-67 219.7 104.8 6 12 2.6e-06 0.0012 19.2 0.9 1 23 158 180 158 180 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF714-210 - 400 2.5e-67 219.7 104.8 7 12 1.2e-07 5.3e-05 23.4 1.3 1 23 186 208 186 208 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF714-210 - 400 2.5e-67 219.7 104.8 8 12 2.2e-07 9.9e-05 22.6 1.0 1 23 214 236 214 236 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF714-210 - 400 2.5e-67 219.7 104.8 9 12 5.7e-09 2.6e-06 27.6 0.4 1 23 242 264 242 264 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF714-210 - 400 2.5e-67 219.7 104.8 10 12 1.3e-09 5.9e-07 29.6 0.9 1 23 270 292 270 292 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF714-210 - 400 2.5e-67 219.7 104.8 11 12 7.3e-09 3.4e-06 27.2 0.4 1 23 298 320 298 320 0.95 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF714-210 - 400 2.5e-67 219.7 104.8 12 12 4.8e-08 2.2e-05 24.7 0.4 1 21 326 346 326 347 0.96 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZNF714-210 - 400 4.7e-30 101.7 96.6 1 12 1.4e-05 0.0062 17.3 1.7 1 23 18 40 18 41 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF714-210 - 400 4.7e-30 101.7 96.6 2 12 0.0003 0.14 13.1 1.8 1 23 46 68 46 69 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF714-210 - 400 4.7e-30 101.7 96.6 3 12 0.0078 3.6 8.7 2.8 1 23 74 96 74 97 0.86 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF714-210 - 400 4.7e-30 101.7 96.6 4 12 0.00022 0.1 13.5 0.9 1 23 102 124 102 125 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF714-210 - 400 4.7e-30 101.7 96.6 5 12 0.00029 0.14 13.1 0.9 1 23 130 152 130 153 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF714-210 - 400 4.7e-30 101.7 96.6 6 12 0.00012 0.053 14.4 0.8 1 23 158 180 158 181 0.91 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF714-210 - 400 4.7e-30 101.7 96.6 7 12 0.00017 0.08 13.8 1.1 1 23 186 208 186 209 0.91 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF714-210 - 400 4.7e-30 101.7 96.6 8 12 0.00067 0.31 12.0 0.8 1 23 214 236 214 237 0.90 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF714-210 - 400 4.7e-30 101.7 96.6 9 12 3.2e-05 0.015 16.1 0.4 1 23 242 264 242 265 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF714-210 - 400 4.7e-30 101.7 96.6 10 12 1.3e-05 0.006 17.3 0.6 1 23 270 292 270 293 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF714-210 - 400 4.7e-30 101.7 96.6 11 12 0.0002 0.092 13.6 0.3 1 19 298 316 298 320 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF714-210 - 400 4.7e-30 101.7 96.6 12 12 3.9e-05 0.018 15.8 0.3 1 21 326 346 326 348 0.93 C2H2-type zinc finger zf-C2H2_jaz PF12171.8 27 ZNF714-210 - 400 1.1e-23 82.9 63.4 1 12 0.001 0.47 10.8 0.6 4 21 20 37 17 38 0.87 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF714-210 - 400 1.1e-23 82.9 63.4 2 12 6.7e-05 0.031 14.6 0.2 2 21 46 65 45 65 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF714-210 - 400 1.1e-23 82.9 63.4 3 12 0.015 6.9 7.1 0.6 2 20 74 92 73 93 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF714-210 - 400 1.1e-23 82.9 63.4 4 12 0.00012 0.056 13.8 0.1 2 21 102 121 101 121 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF714-210 - 400 1.1e-23 82.9 63.4 5 12 0.0055 2.5 8.5 1.2 2 16 130 144 129 149 0.77 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF714-210 - 400 1.1e-23 82.9 63.4 6 12 0.0041 1.9 8.9 0.2 2 22 158 178 157 178 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF714-210 - 400 1.1e-23 82.9 63.4 7 12 0.021 9.7 6.6 0.2 2 20 186 204 185 205 0.87 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF714-210 - 400 1.1e-23 82.9 63.4 8 12 0.008 3.7 8.0 0.4 2 20 214 232 213 233 0.88 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF714-210 - 400 1.1e-23 82.9 63.4 9 12 0.0021 0.95 9.8 0.3 2 21 242 261 241 262 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF714-210 - 400 1.1e-23 82.9 63.4 10 12 0.00017 0.08 13.3 0.2 2 22 270 290 269 290 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF714-210 - 400 1.1e-23 82.9 63.4 11 12 0.00045 0.21 11.9 0.2 2 20 298 316 297 317 0.95 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF714-210 - 400 1.1e-23 82.9 63.4 12 12 0.00072 0.33 11.3 0.4 2 22 326 346 325 346 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_6 PF13912.6 27 ZNF714-210 - 400 1.1e-23 82.7 88.2 1 12 3.1e-05 0.014 15.4 1.0 2 24 18 40 17 43 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF714-210 - 400 1.1e-23 82.7 88.2 2 12 0.011 5 7.2 2.2 2 21 46 65 46 68 0.85 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF714-210 - 400 1.1e-23 82.7 88.2 3 12 0.042 19 5.4 1.7 2 11 74 83 74 96 0.79 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF714-210 - 400 1.1e-23 82.7 88.2 4 12 0.00013 0.062 13.3 1.3 2 24 102 125 102 128 0.88 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF714-210 - 400 1.1e-23 82.7 88.2 5 12 4.7e-05 0.021 14.8 0.9 2 24 130 152 130 155 0.92 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF714-210 - 400 1.1e-23 82.7 88.2 6 12 0.0035 1.6 8.8 1.2 2 24 158 180 157 183 0.88 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF714-210 - 400 1.1e-23 82.7 88.2 7 12 0.0057 2.6 8.1 1.2 2 21 186 205 186 208 0.82 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF714-210 - 400 1.1e-23 82.7 88.2 8 12 0.0083 3.8 7.6 0.8 2 12 214 224 214 237 0.82 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF714-210 - 400 1.1e-23 82.7 88.2 9 12 6.2e-05 0.029 14.4 0.8 2 24 242 264 242 267 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF714-210 - 400 1.1e-23 82.7 88.2 10 12 2e-06 0.00094 19.1 0.6 2 24 270 292 269 295 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF714-210 - 400 1.1e-23 82.7 88.2 11 12 3.8e-05 0.017 15.1 0.4 2 24 298 320 298 323 0.92 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF714-210 - 400 1.1e-23 82.7 88.2 12 12 0.0013 0.62 10.1 0.8 2 22 326 346 325 347 0.88 C2H2-type zinc finger XPA_N PF01286.18 32 ZNF714-210 - 400 1.2e-21 76.5 53.2 1 12 0.13 61 3.8 0.7 3 12 19 28 18 30 0.87 XPA protein N-terminal XPA_N PF01286.18 32 ZNF714-210 - 400 1.2e-21 76.5 53.2 2 12 0.00086 0.4 10.8 0.2 3 14 47 58 45 65 0.86 XPA protein N-terminal XPA_N PF01286.18 32 ZNF714-210 - 400 1.2e-21 76.5 53.2 3 12 0.0019 0.9 9.6 0.1 3 17 75 89 73 94 0.79 XPA protein N-terminal XPA_N PF01286.18 32 ZNF714-210 - 400 1.2e-21 76.5 53.2 4 12 0.0067 3.1 7.9 0.1 3 12 103 112 101 119 0.90 XPA protein N-terminal XPA_N PF01286.18 32 ZNF714-210 - 400 1.2e-21 76.5 53.2 5 12 0.0032 1.5 8.9 0.3 3 18 131 147 129 148 0.79 XPA protein N-terminal XPA_N PF01286.18 32 ZNF714-210 - 400 1.2e-21 76.5 53.2 6 12 0.032 15 5.7 0.1 3 14 159 170 158 175 0.86 XPA protein N-terminal XPA_N PF01286.18 32 ZNF714-210 - 400 1.2e-21 76.5 53.2 7 12 0.00091 0.42 10.7 0.1 3 15 187 199 185 205 0.82 XPA protein N-terminal XPA_N PF01286.18 32 ZNF714-210 - 400 1.2e-21 76.5 53.2 8 12 0.0015 0.7 10.0 0.2 3 14 215 226 213 230 0.88 XPA protein N-terminal XPA_N PF01286.18 32 ZNF714-210 - 400 1.2e-21 76.5 53.2 9 12 0.00077 0.35 10.9 0.2 3 14 243 254 241 260 0.89 XPA protein N-terminal XPA_N PF01286.18 32 ZNF714-210 - 400 1.2e-21 76.5 53.2 10 12 0.0017 0.79 9.8 0.1 3 14 271 282 270 288 0.88 XPA protein N-terminal XPA_N PF01286.18 32 ZNF714-210 - 400 1.2e-21 76.5 53.2 11 12 0.0015 0.68 10.0 0.1 3 14 299 310 297 316 0.88 XPA protein N-terminal XPA_N PF01286.18 32 ZNF714-210 - 400 1.2e-21 76.5 53.2 12 12 0.00091 0.42 10.7 0.3 3 14 327 338 326 344 0.89 XPA protein N-terminal zf_UBZ PF18439.1 32 ZNF714-210 - 400 8.3e-19 66.9 54.2 1 12 0.003 1.4 8.6 0.2 1 14 16 29 16 37 0.81 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF714-210 - 400 8.3e-19 66.9 54.2 2 12 0.0018 0.82 9.3 0.4 3 20 46 64 44 65 0.87 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF714-210 - 400 8.3e-19 66.9 54.2 3 12 0.0046 2.1 8.0 0.5 3 20 74 92 72 93 0.81 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF714-210 - 400 8.3e-19 66.9 54.2 4 12 0.002 0.91 9.2 0.2 3 20 102 120 100 121 0.87 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF714-210 - 400 8.3e-19 66.9 54.2 5 12 0.028 13 5.5 0.2 3 12 130 139 128 146 0.86 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF714-210 - 400 8.3e-19 66.9 54.2 6 12 0.0088 4 7.1 0.1 2 12 157 167 156 177 0.82 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF714-210 - 400 8.3e-19 66.9 54.2 7 12 0.0015 0.71 9.5 0.2 3 20 186 204 184 205 0.83 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF714-210 - 400 8.3e-19 66.9 54.2 8 12 0.0025 1.1 8.9 0.2 3 17 214 228 212 233 0.81 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF714-210 - 400 8.3e-19 66.9 54.2 9 12 0.0028 1.3 8.7 0.2 3 20 242 260 240 261 0.80 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF714-210 - 400 8.3e-19 66.9 54.2 10 12 0.0021 0.98 9.1 0.1 3 20 270 288 268 289 0.83 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF714-210 - 400 8.3e-19 66.9 54.2 11 12 0.0033 1.5 8.5 0.1 3 20 298 316 296 317 0.80 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF714-210 - 400 8.3e-19 66.9 54.2 12 12 0.0013 0.6 9.7 0.2 2 17 325 341 324 345 0.79 Ubiquitin-Binding Zinc Finger Zn-ribbon_8 PF09723.10 40 ZNF714-210 - 400 7.9e-16 57.9 74.3 1 12 0.0017 0.77 9.9 0.3 6 21 18 33 17 43 0.85 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF714-210 - 400 7.9e-16 57.9 74.3 2 12 0.00095 0.44 10.7 6.6 6 34 46 81 45 84 0.89 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF714-210 - 400 7.9e-16 57.9 74.3 3 12 0.01 4.7 7.4 7.4 6 34 74 109 73 111 0.78 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF714-210 - 400 7.9e-16 57.9 74.3 4 12 0.011 5.2 7.3 7.2 6 37 102 140 101 142 0.75 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF714-210 - 400 7.9e-16 57.9 74.3 5 12 0.011 4.9 7.3 1.0 6 19 130 143 129 149 0.88 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF714-210 - 400 7.9e-16 57.9 74.3 6 12 9.4e-05 0.043 13.9 5.2 6 34 158 193 157 197 0.89 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF714-210 - 400 7.9e-16 57.9 74.3 7 12 0.00023 0.1 12.7 5.9 6 34 186 221 185 221 0.88 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF714-210 - 400 7.9e-16 57.9 74.3 8 12 0.00012 0.053 13.6 6.4 6 35 214 250 211 253 0.91 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF714-210 - 400 7.9e-16 57.9 74.3 9 12 0.0032 1.4 9.0 0.7 6 17 242 253 241 264 0.82 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF714-210 - 400 7.9e-16 57.9 74.3 10 12 0.00014 0.066 13.4 6.2 6 38 270 309 269 311 0.84 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF714-210 - 400 7.9e-16 57.9 74.3 11 12 0.0036 1.6 8.9 0.7 6 17 298 309 297 317 0.84 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF714-210 - 400 7.9e-16 57.9 74.3 12 12 0.0013 0.61 10.3 0.3 6 18 326 338 325 356 0.81 Zinc ribbon domain zf-C2H2_11 PF16622.5 29 ZNF714-210 - 400 6.3e-15 54.6 36.9 1 12 0.011 4.9 7.0 0.2 2 24 15 37 14 40 0.83 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF714-210 - 400 6.3e-15 54.6 36.9 2 12 0.091 42 4.0 0.1 5 24 46 65 43 68 0.77 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF714-210 - 400 6.3e-15 54.6 36.9 3 12 0.14 64 3.4 0.1 5 14 74 83 71 95 0.77 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF714-210 - 400 6.3e-15 54.6 36.9 4 12 0.008 3.7 7.4 0.0 5 26 102 123 99 125 0.93 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF714-210 - 400 6.3e-15 54.6 36.9 5 12 1.9 8.6e+02 -0.2 0.1 5 25 130 150 128 152 0.72 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF714-210 - 400 6.3e-15 54.6 36.9 6 12 0.0013 0.6 9.9 0.1 3 26 156 179 155 180 0.92 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF714-210 - 400 6.3e-15 54.6 36.9 7 12 0.055 25 4.7 0.1 5 25 186 206 183 208 0.79 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF714-210 - 400 6.3e-15 54.6 36.9 8 12 0.12 53 3.7 0.1 5 19 214 228 211 236 0.72 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF714-210 - 400 6.3e-15 54.6 36.9 9 12 0.0064 3 7.7 0.0 5 26 242 263 239 264 0.90 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF714-210 - 400 6.3e-15 54.6 36.9 10 12 0.079 36 4.2 0.2 5 26 270 291 269 292 0.82 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF714-210 - 400 6.3e-15 54.6 36.9 11 12 0.0087 4 7.3 0.0 5 26 298 319 295 320 0.90 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF714-210 - 400 6.3e-15 54.6 36.9 12 12 0.00021 0.096 12.5 0.1 3 26 324 347 323 348 0.93 zinc-finger C2H2-type zf-RING_7 PF02591.15 33 ZNF714-210 - 400 7.2e-07 29.3 44.9 1 12 1.1 5.1e+02 1.0 0.2 23 29 17 23 6 25 0.76 C4-type zinc ribbon domain zf-RING_7 PF02591.15 33 ZNF714-210 - 400 7.2e-07 29.3 44.9 2 12 0.022 10 6.4 0.1 15 30 37 52 34 53 0.88 C4-type zinc ribbon domain zf-RING_7 PF02591.15 33 ZNF714-210 - 400 7.2e-07 29.3 44.9 3 12 0.026 12 6.2 0.1 17 30 67 80 63 81 0.84 C4-type zinc ribbon domain zf-RING_7 PF02591.15 33 ZNF714-210 - 400 7.2e-07 29.3 44.9 4 12 0.063 29 5.0 0.1 17 30 95 108 91 109 0.83 C4-type zinc ribbon domain zf-RING_7 PF02591.15 33 ZNF714-210 - 400 7.2e-07 29.3 44.9 5 12 0.86 4e+02 1.3 0.1 18 29 124 135 119 136 0.77 C4-type zinc ribbon domain zf-RING_7 PF02591.15 33 ZNF714-210 - 400 7.2e-07 29.3 44.9 6 12 0.13 59 4.0 0.1 18 30 152 164 149 165 0.81 C4-type zinc ribbon domain zf-RING_7 PF02591.15 33 ZNF714-210 - 400 7.2e-07 29.3 44.9 7 12 0.037 17 5.7 0.2 15 30 177 192 175 193 0.89 C4-type zinc ribbon domain zf-RING_7 PF02591.15 33 ZNF714-210 - 400 7.2e-07 29.3 44.9 8 12 0.08 37 4.6 0.1 17 30 207 220 203 221 0.83 C4-type zinc ribbon domain zf-RING_7 PF02591.15 33 ZNF714-210 - 400 7.2e-07 29.3 44.9 9 12 0.12 53 4.1 0.1 18 30 236 248 230 249 0.81 C4-type zinc ribbon domain zf-RING_7 PF02591.15 33 ZNF714-210 - 400 7.2e-07 29.3 44.9 10 12 0.022 9.9 6.4 0.1 18 30 264 276 260 277 0.85 C4-type zinc ribbon domain zf-RING_7 PF02591.15 33 ZNF714-210 - 400 7.2e-07 29.3 44.9 11 12 0.03 14 6.0 0.1 15 30 289 304 286 305 0.89 C4-type zinc ribbon domain zf-RING_7 PF02591.15 33 ZNF714-210 - 400 7.2e-07 29.3 44.9 12 12 0.16 76 3.6 0.1 19 30 321 332 317 333 0.79 C4-type zinc ribbon domain # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF714-210.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF714-210.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF714-210.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF714-210.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF714-210.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:13:20 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZNF716-201 - 495 4.3e-85 276.7 95.0 1 12 0.00053 0.34 11.4 3.3 3 18 173 188 171 195 0.85 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF716-201 - 495 4.3e-85 276.7 95.0 2 12 1.7e-08 1.1e-05 25.6 1.8 2 25 200 223 199 224 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF716-201 - 495 4.3e-85 276.7 95.0 3 12 7.6e-12 4.9e-09 36.2 1.1 2 25 228 251 227 251 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF716-201 - 495 4.3e-85 276.7 95.0 4 12 1.7e-09 1.1e-06 28.8 0.4 1 25 255 279 255 280 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF716-201 - 495 4.3e-85 276.7 95.0 5 12 2.5e-09 1.6e-06 28.3 0.8 7 25 288 306 287 307 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF716-201 - 495 4.3e-85 276.7 95.0 6 12 6.9e-11 4.4e-08 33.2 0.8 2 25 311 334 310 334 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF716-201 - 495 4.3e-85 276.7 95.0 7 12 4.3e-10 2.8e-07 30.7 1.0 2 25 339 362 338 362 0.97 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF716-201 - 495 4.3e-85 276.7 95.0 8 12 1.9e-11 1.2e-08 35.0 0.7 2 25 367 390 366 390 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF716-201 - 495 4.3e-85 276.7 95.0 9 12 1.9e-10 1.2e-07 31.8 5.9 3 25 396 418 395 419 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF716-201 - 495 4.3e-85 276.7 95.0 10 12 1.1e-09 7.3e-07 29.3 1.9 2 25 423 446 422 446 0.97 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF716-201 - 495 4.3e-85 276.7 95.0 11 12 7e-11 4.5e-08 33.2 1.6 2 25 451 474 450 474 0.97 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF716-201 - 495 4.3e-85 276.7 95.0 12 12 0.00096 0.62 10.6 0.2 2 16 479 493 478 495 0.87 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZNF716-201 - 495 1.3e-41 138.7 90.3 1 12 3.6 2.3e+03 -0.6 2.6 4 23 160 179 160 179 0.92 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF716-201 - 495 1.3e-41 138.7 90.3 2 12 0.055 35 5.1 0.7 3 23 187 207 185 207 0.83 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF716-201 - 495 1.3e-41 138.7 90.3 3 12 1.2e-06 0.00078 19.8 3.8 1 23 213 235 213 235 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF716-201 - 495 1.3e-41 138.7 90.3 4 12 1.2e-06 0.00074 19.8 0.3 1 23 241 263 241 263 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF716-201 - 495 1.3e-41 138.7 90.3 5 12 5.6 3.6e+03 -1.2 0.1 3 13 271 281 269 284 0.66 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF716-201 - 495 1.3e-41 138.7 90.3 6 12 3.5e-09 2.3e-06 27.8 0.9 1 23 296 318 296 318 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF716-201 - 495 1.3e-41 138.7 90.3 7 12 2.4e-07 0.00015 22.0 0.5 1 23 324 346 324 346 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF716-201 - 495 1.3e-41 138.7 90.3 8 12 5.6e-08 3.6e-05 24.0 0.9 1 23 352 374 352 374 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF716-201 - 495 1.3e-41 138.7 90.3 9 12 4.3e-07 0.00028 21.2 1.3 1 23 380 402 380 402 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF716-201 - 495 1.3e-41 138.7 90.3 10 12 8.7e-06 0.0055 17.1 2.1 1 23 408 430 408 430 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF716-201 - 495 1.3e-41 138.7 90.3 11 12 5.4e-08 3.5e-05 24.0 1.8 1 23 436 458 436 458 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF716-201 - 495 1.3e-41 138.7 90.3 12 12 5e-05 0.032 14.7 2.0 1 23 464 486 464 486 0.98 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZNF716-201 - 495 1.2e-24 84.8 85.7 1 11 9.9 6.3e+03 -1.4 2.2 4 23 160 179 157 184 0.50 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF716-201 - 495 1.2e-24 84.8 85.7 2 11 0.8 5.1e+02 2.0 0.4 7 23 191 207 185 208 0.80 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF716-201 - 495 1.2e-24 84.8 85.7 3 11 2.3e-06 0.0015 19.2 3.0 1 23 213 235 213 236 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF716-201 - 495 1.2e-24 84.8 85.7 4 11 0.00022 0.14 13.1 0.5 1 23 241 263 241 264 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF716-201 - 495 1.2e-24 84.8 85.7 5 11 7e-06 0.0045 17.7 0.6 1 23 296 318 296 319 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF716-201 - 495 1.2e-24 84.8 85.7 6 11 1.9e-05 0.012 16.4 0.7 1 23 324 346 324 347 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF716-201 - 495 1.2e-24 84.8 85.7 7 11 5.6e-05 0.036 14.9 0.6 1 23 352 374 352 375 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF716-201 - 495 1.2e-24 84.8 85.7 8 11 8.2e-05 0.052 14.4 1.0 1 23 380 402 380 403 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF716-201 - 495 1.2e-24 84.8 85.7 9 11 6.9e-06 0.0044 17.7 1.9 1 23 408 430 408 431 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF716-201 - 495 1.2e-24 84.8 85.7 10 11 3.1e-05 0.02 15.7 1.2 1 23 436 458 436 459 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF716-201 - 495 1.2e-24 84.8 85.7 11 11 0.0024 1.5 9.8 1.7 1 23 464 486 464 487 0.85 C2H2-type zinc finger KRAB PF01352.27 42 ZNF716-201 - 495 4.4e-23 80.7 0.1 1 1 1.4e-25 8.9e-23 79.7 0.1 2 42 16 56 15 56 0.98 KRAB box zf-C2H2_11 PF16622.5 29 ZNF716-201 - 495 1.2e-17 63.3 37.0 1 9 0.00016 0.099 12.4 1.7 3 26 211 234 210 235 0.93 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF716-201 - 495 1.2e-17 63.3 37.0 2 9 1.4e-05 0.0092 15.7 0.0 5 26 241 262 238 263 0.94 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF716-201 - 495 1.2e-17 63.3 37.0 3 9 0.013 8.3 6.3 0.1 7 26 298 317 295 318 0.92 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF716-201 - 495 1.2e-17 63.3 37.0 4 9 0.0001 0.066 13.0 0.2 5 28 324 346 322 346 0.90 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF716-201 - 495 1.2e-17 63.3 37.0 5 9 0.0014 0.93 9.3 0.2 7 26 354 373 352 374 0.93 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF716-201 - 495 1.2e-17 63.3 37.0 6 9 0.44 2.8e+02 1.4 0.1 7 15 382 390 379 394 0.87 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF716-201 - 495 1.2e-17 63.3 37.0 7 9 0.00044 0.28 11.0 0.2 5 26 408 429 405 430 0.91 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF716-201 - 495 1.2e-17 63.3 37.0 8 9 0.00029 0.19 11.5 0.4 5 26 436 457 435 458 0.94 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF716-201 - 495 1.2e-17 63.3 37.0 9 9 0.44 2.8e+02 1.4 0.0 5 24 464 483 461 486 0.85 zinc-finger C2H2-type zf_UBZ PF18439.1 32 ZNF716-201 - 495 5.5e-13 48.3 44.0 1 10 4.2 2.7e+03 -1.9 0.1 24 32 92 100 92 100 0.90 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF716-201 - 495 5.5e-13 48.3 44.0 2 10 0.00098 0.63 9.7 1.0 2 16 212 227 211 232 0.79 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF716-201 - 495 5.5e-13 48.3 44.0 3 10 0.0052 3.3 7.4 0.1 3 15 241 253 239 260 0.77 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF716-201 - 495 5.5e-13 48.3 44.0 4 10 0.00068 0.44 10.2 0.1 3 18 296 312 294 315 0.79 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF716-201 - 495 5.5e-13 48.3 44.0 5 10 0.002 1.3 8.7 0.1 3 15 324 336 322 343 0.81 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF716-201 - 495 5.5e-13 48.3 44.0 6 10 0.0011 0.69 9.6 0.1 3 20 352 370 350 371 0.80 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF716-201 - 495 5.5e-13 48.3 44.0 7 10 0.001 0.66 9.6 0.1 3 15 380 392 378 399 0.83 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF716-201 - 495 5.5e-13 48.3 44.0 8 10 0.0072 4.6 6.9 0.9 3 15 408 420 406 427 0.80 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF716-201 - 495 5.5e-13 48.3 44.0 9 10 0.0064 4.1 7.1 0.1 3 20 436 454 434 455 0.80 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF716-201 - 495 5.5e-13 48.3 44.0 10 10 0.011 6.9 6.4 0.4 3 15 464 476 462 483 0.77 Ubiquitin-Binding Zinc Finger XPA_N PF01286.18 32 ZNF716-201 - 495 1.8e-12 47.1 43.5 1 10 0.01 6.6 6.9 1.4 3 14 214 225 213 230 0.86 XPA protein N-terminal XPA_N PF01286.18 32 ZNF716-201 - 495 1.8e-12 47.1 43.5 2 10 0.0047 3 8.0 0.1 3 14 242 253 240 257 0.87 XPA protein N-terminal XPA_N PF01286.18 32 ZNF716-201 - 495 1.8e-12 47.1 43.5 3 10 5.4 3.5e+03 -1.8 0.0 3 16 270 283 269 285 0.85 XPA protein N-terminal XPA_N PF01286.18 32 ZNF716-201 - 495 1.8e-12 47.1 43.5 4 10 0.00092 0.59 10.2 0.1 3 14 297 308 295 315 0.83 XPA protein N-terminal XPA_N PF01286.18 32 ZNF716-201 - 495 1.8e-12 47.1 43.5 5 10 0.0018 1.1 9.3 0.2 3 14 325 336 323 342 0.87 XPA protein N-terminal XPA_N PF01286.18 32 ZNF716-201 - 495 1.8e-12 47.1 43.5 6 10 0.0031 2 8.5 0.2 3 14 353 364 352 370 0.86 XPA protein N-terminal XPA_N PF01286.18 32 ZNF716-201 - 495 1.8e-12 47.1 43.5 7 10 0.0068 4.3 7.4 0.1 3 11 381 389 379 392 0.89 XPA protein N-terminal XPA_N PF01286.18 32 ZNF716-201 - 495 1.8e-12 47.1 43.5 8 10 0.0051 3.3 7.8 1.1 3 14 409 420 407 426 0.85 XPA protein N-terminal XPA_N PF01286.18 32 ZNF716-201 - 495 1.8e-12 47.1 43.5 9 10 0.0052 3.3 7.8 0.2 3 14 437 448 436 454 0.86 XPA protein N-terminal XPA_N PF01286.18 32 ZNF716-201 - 495 1.8e-12 47.1 43.5 10 10 0.018 12 6.1 0.2 3 12 465 474 463 479 0.90 XPA protein N-terminal zf-C2H2_jaz PF12171.8 27 ZNF716-201 - 495 3.8e-12 46.2 46.4 1 9 0.0025 1.6 9.1 0.9 2 22 213 233 212 233 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF716-201 - 495 3.8e-12 46.2 46.4 2 9 0.013 8.1 6.9 0.0 2 22 241 261 240 261 0.90 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF716-201 - 495 3.8e-12 46.2 46.4 3 9 5.1e-05 0.033 14.5 0.0 2 22 296 316 295 316 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF716-201 - 495 3.8e-12 46.2 46.4 4 9 0.0027 1.7 9.0 0.1 2 21 324 343 323 344 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF716-201 - 495 3.8e-12 46.2 46.4 5 9 0.05 32 5.0 0.1 2 21 352 371 351 372 0.89 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF716-201 - 495 3.8e-12 46.2 46.4 6 9 0.0071 4.5 7.7 0.1 2 24 380 402 379 402 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF716-201 - 495 3.8e-12 46.2 46.4 7 9 0.0028 1.8 8.9 1.1 2 21 408 427 407 428 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF716-201 - 495 3.8e-12 46.2 46.4 8 9 0.037 23 5.4 0.3 2 21 436 455 435 456 0.89 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF716-201 - 495 3.8e-12 46.2 46.4 9 9 0.0059 3.8 7.9 1.5 2 22 464 484 463 484 0.94 Zinc-finger double-stranded RNA-binding Zn-ribbon_8 PF09723.10 40 ZNF716-201 - 495 8.5e-08 32.2 63.7 1 11 1.6 1e+03 -0.1 0.1 6 19 185 198 184 206 0.80 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF716-201 - 495 8.5e-08 32.2 63.7 2 11 0.00083 0.53 10.4 9.0 6 34 213 248 212 251 0.87 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF716-201 - 495 8.5e-08 32.2 63.7 3 11 0.0071 4.6 7.5 2.9 6 22 241 263 240 273 0.67 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF716-201 - 495 8.5e-08 32.2 63.7 4 11 0.0047 3 8.0 2.0 6 38 269 307 268 309 0.77 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF716-201 - 495 8.5e-08 32.2 63.7 5 11 0.013 8.4 6.6 0.5 6 17 296 307 295 315 0.83 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF716-201 - 495 8.5e-08 32.2 63.7 6 11 0.00037 0.24 11.6 4.9 6 34 324 359 323 362 0.73 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF716-201 - 495 8.5e-08 32.2 63.7 7 11 0.00062 0.39 10.9 5.3 6 34 352 387 351 390 0.84 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF716-201 - 495 8.5e-08 32.2 63.7 8 11 0.0094 6 7.1 7.5 6 34 380 415 377 418 0.82 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF716-201 - 495 8.5e-08 32.2 63.7 9 11 0.0016 1.1 9.5 7.8 6 35 408 444 407 446 0.81 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF716-201 - 495 8.5e-08 32.2 63.7 10 11 0.0027 1.7 8.8 6.8 6 34 436 471 435 474 0.84 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF716-201 - 495 8.5e-08 32.2 63.7 11 11 0.016 10 6.3 0.9 6 16 464 474 463 485 0.81 Zinc ribbon domain zf-trcl PF13451.6 48 ZNF716-201 - 495 3.1e-07 30.2 48.7 1 8 0.06 39 4.3 1.0 3 14 211 222 209 226 0.88 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF716-201 - 495 3.1e-07 30.2 48.7 2 8 0.0013 0.86 9.6 0.1 3 19 239 255 237 259 0.90 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF716-201 - 495 3.1e-07 30.2 48.7 3 8 0.023 15 5.6 0.1 3 14 294 305 292 308 0.90 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF716-201 - 495 3.1e-07 30.2 48.7 4 8 0.078 50 3.9 0.1 4 14 323 333 321 338 0.83 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF716-201 - 495 3.1e-07 30.2 48.7 5 8 0.00073 0.47 10.4 0.5 3 18 350 365 349 366 0.88 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF716-201 - 495 3.1e-07 30.2 48.7 6 8 0.019 12 5.9 5.0 3 41 378 415 376 421 0.78 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF716-201 - 495 3.1e-07 30.2 48.7 7 8 0.00056 0.36 10.8 0.4 3 18 434 449 433 450 0.87 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF716-201 - 495 3.1e-07 30.2 48.7 8 8 0.019 12 5.8 0.1 3 17 462 476 460 479 0.87 Probable zinc-ribbon domain zf-RING_7 PF02591.15 33 ZNF716-201 - 495 3.9e-07 30.1 33.0 1 10 0.15 95 3.3 0.1 21 30 210 219 196 220 0.73 C4-type zinc ribbon domain zf-RING_7 PF02591.15 33 ZNF716-201 - 495 3.9e-07 30.1 33.0 2 10 0.0087 5.6 7.2 0.2 15 30 232 247 229 248 0.89 C4-type zinc ribbon domain zf-RING_7 PF02591.15 33 ZNF716-201 - 495 3.9e-07 30.1 33.0 3 10 5.5 3.5e+03 -1.7 0.0 15 28 260 273 259 273 0.85 C4-type zinc ribbon domain zf-RING_7 PF02591.15 33 ZNF716-201 - 495 3.9e-07 30.1 33.0 4 10 0.0033 2.1 8.6 0.1 14 30 286 302 285 303 0.94 C4-type zinc ribbon domain zf-RING_7 PF02591.15 33 ZNF716-201 - 495 3.9e-07 30.1 33.0 5 10 0.09 58 4.0 0.2 16 30 316 330 314 331 0.84 C4-type zinc ribbon domain zf-RING_7 PF02591.15 33 ZNF716-201 - 495 3.9e-07 30.1 33.0 6 10 0.006 3.8 7.8 0.0 18 30 346 358 337 359 0.85 C4-type zinc ribbon domain zf-RING_7 PF02591.15 33 ZNF716-201 - 495 3.9e-07 30.1 33.0 7 10 0.0077 4.9 7.4 0.1 15 30 371 386 368 387 0.89 C4-type zinc ribbon domain zf-RING_7 PF02591.15 33 ZNF716-201 - 495 3.9e-07 30.1 33.0 8 10 0.18 1.1e+02 3.0 0.2 20 30 404 414 399 415 0.78 C4-type zinc ribbon domain zf-RING_7 PF02591.15 33 ZNF716-201 - 495 3.9e-07 30.1 33.0 9 10 0.18 1.2e+02 3.0 0.1 17 30 429 442 424 443 0.86 C4-type zinc ribbon domain zf-RING_7 PF02591.15 33 ZNF716-201 - 495 3.9e-07 30.1 33.0 10 10 0.18 1.1e+02 3.0 0.2 15 29 455 469 452 470 0.87 C4-type zinc ribbon domain # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF716-201.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF716-201.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF716-201.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF716-201.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF716-201.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:13:21 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- KRAB PF01352.27 42 ZNF7-201 - 159 2.3e-22 78.4 0.0 1 1 1.9e-26 3.3e-22 77.8 0.0 2 42 15 55 14 55 0.97 KRAB box # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF7-201.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF7-201.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF7-201.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF7-201.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF7-201.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:13:21 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZNF7-202 - 697 6.6e-103 333.0 102.2 1 18 3.3 3.9e+03 -1.4 0.2 16 22 208 214 207 215 0.87 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF7-202 - 697 6.6e-103 333.0 102.2 2 18 7.4e-06 0.0088 16.4 2.4 8 24 250 270 248 271 0.85 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF7-202 - 697 6.6e-103 333.0 102.2 3 18 1.7e-11 2.1e-08 34.2 0.5 2 24 276 298 275 299 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF7-202 - 697 6.6e-103 333.0 102.2 4 18 3e-11 3.6e-08 33.5 0.2 2 25 304 327 303 328 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF7-202 - 697 6.6e-103 333.0 102.2 5 18 1.9e-08 2.3e-05 24.6 0.3 2 25 332 355 331 356 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF7-202 - 697 6.6e-103 333.0 102.2 6 18 4e-12 4.7e-09 36.3 0.5 2 25 360 383 359 384 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF7-202 - 697 6.6e-103 333.0 102.2 7 18 0.0086 10 6.7 0.0 2 13 388 399 387 403 0.90 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF7-202 - 697 6.6e-103 333.0 102.2 8 18 1.2e-09 1.5e-06 28.4 0.1 1 24 410 433 410 434 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF7-202 - 697 6.6e-103 333.0 102.2 9 18 8.8e-10 1e-06 28.8 2.1 2 25 439 462 438 463 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF7-202 - 697 6.6e-103 333.0 102.2 10 18 5.8e-12 6.9e-09 35.7 0.4 2 25 467 490 466 491 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF7-202 - 697 6.6e-103 333.0 102.2 11 18 1.3e-10 1.6e-07 31.4 0.2 1 25 494 518 494 519 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF7-202 - 697 6.6e-103 333.0 102.2 12 18 1.7e-10 2e-07 31.1 0.3 2 25 523 546 522 546 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF7-202 - 697 6.6e-103 333.0 102.2 13 18 9e-11 1.1e-07 32.0 0.2 2 25 551 574 550 575 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF7-202 - 697 6.6e-103 333.0 102.2 14 18 1.7e-08 2e-05 24.8 0.1 4 25 581 602 579 603 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF7-202 - 697 6.6e-103 333.0 102.2 15 18 1.6 1.9e+03 -0.4 0.0 2 10 607 615 606 628 0.88 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF7-202 - 697 6.6e-103 333.0 102.2 16 18 0.038 46 4.7 0.1 12 24 642 654 629 655 0.86 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF7-202 - 697 6.6e-103 333.0 102.2 17 18 1.7e-10 2e-07 31.1 0.6 4 25 662 683 659 684 0.90 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF7-202 - 697 6.6e-103 333.0 102.2 18 18 1.3 1.6e+03 -0.2 0.3 2 11 688 697 687 697 0.89 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZNF7-202 - 697 4.8e-78 253.5 105.8 1 17 0.088 1e+02 3.6 0.0 2 19 208 225 207 228 0.85 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF7-202 - 697 4.8e-78 253.5 105.8 2 17 2.7 3.2e+03 -1.1 1.4 2 11 235 244 234 246 0.83 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF7-202 - 697 4.8e-78 253.5 105.8 3 17 1.6e-07 0.00019 21.7 1.0 1 23 261 283 261 283 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF7-202 - 697 4.8e-78 253.5 105.8 4 17 9e-08 0.00011 22.5 0.7 1 23 289 311 289 311 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF7-202 - 697 4.8e-78 253.5 105.8 5 17 1.2e-08 1.5e-05 25.2 0.6 1 23 317 339 317 339 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF7-202 - 697 4.8e-78 253.5 105.8 6 17 2.6e-09 3.1e-06 27.3 0.5 3 23 347 367 345 367 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF7-202 - 697 4.8e-78 253.5 105.8 7 17 3.1e-09 3.7e-06 27.1 0.4 1 23 373 395 373 395 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF7-202 - 697 4.8e-78 253.5 105.8 8 17 0.37 4.5e+02 1.6 0.0 12 23 407 418 405 418 0.86 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF7-202 - 697 4.8e-78 253.5 105.8 9 17 0.00016 0.19 12.2 0.2 1 23 424 446 424 446 0.94 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF7-202 - 697 4.8e-78 253.5 105.8 10 17 4.7e-05 0.057 13.9 4.4 1 23 452 474 452 474 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF7-202 - 697 4.8e-78 253.5 105.8 11 17 1.1e-07 0.00013 22.2 0.4 1 23 480 502 480 502 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF7-202 - 697 4.8e-78 253.5 105.8 12 17 1.4e-09 1.6e-06 28.2 0.3 1 23 508 530 508 530 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF7-202 - 697 4.8e-78 253.5 105.8 13 17 3.4e-07 0.00041 20.7 0.3 1 23 536 558 536 558 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF7-202 - 697 4.8e-78 253.5 105.8 14 17 1.8e-08 2.1e-05 24.7 0.5 1 23 564 586 564 586 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF7-202 - 697 4.8e-78 253.5 105.8 15 17 4.1e-09 4.9e-06 26.7 0.3 1 23 592 614 592 614 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF7-202 - 697 4.8e-78 253.5 105.8 16 17 7.1e-06 0.0085 16.5 1.9 1 23 645 667 645 667 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF7-202 - 697 4.8e-78 253.5 105.8 17 17 4e-09 4.7e-06 26.7 1.2 1 23 673 695 673 695 0.99 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZNF7-202 - 697 2.7e-37 124.2 111.8 1 16 2.7 3.2e+03 -0.5 0.0 2 9 208 215 208 227 0.74 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF7-202 - 697 2.7e-37 124.2 111.8 2 16 6.5 7.8e+03 -1.7 4.8 2 24 235 256 234 256 0.84 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF7-202 - 697 2.7e-37 124.2 111.8 3 16 5e-05 0.059 14.2 1.3 1 23 261 283 261 284 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF7-202 - 697 2.7e-37 124.2 111.8 4 16 2.8e-05 0.033 15.0 0.7 1 23 289 311 289 312 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF7-202 - 697 2.7e-37 124.2 111.8 5 16 2.2e-05 0.026 15.3 0.7 1 23 317 339 317 340 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF7-202 - 697 2.7e-37 124.2 111.8 6 16 4.4e-06 0.0053 17.5 0.6 2 23 346 367 345 368 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF7-202 - 697 2.7e-37 124.2 111.8 7 16 4.7e-06 0.0056 17.4 0.5 1 23 373 395 373 396 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF7-202 - 697 2.7e-37 124.2 111.8 8 16 0.0016 2 9.5 0.4 1 23 424 446 424 447 0.85 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF7-202 - 697 2.7e-37 124.2 111.8 9 16 2.5e-05 0.03 15.1 3.2 1 23 452 474 452 475 0.97 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF7-202 - 697 2.7e-37 124.2 111.8 10 16 4.1e-05 0.049 14.5 0.5 1 23 480 502 480 503 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF7-202 - 697 2.7e-37 124.2 111.8 11 16 3.1e-05 0.037 14.9 0.4 1 23 508 530 508 531 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF7-202 - 697 2.7e-37 124.2 111.8 12 16 0.00017 0.2 12.6 0.4 1 23 536 558 536 559 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF7-202 - 697 2.7e-37 124.2 111.8 13 16 2.2e-05 0.027 15.3 0.3 1 23 564 586 564 587 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF7-202 - 697 2.7e-37 124.2 111.8 14 16 2.8e-05 0.033 15.0 0.4 1 23 592 614 592 615 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF7-202 - 697 2.7e-37 124.2 111.8 15 16 0.037 44 5.3 1.7 1 23 645 667 645 668 0.83 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF7-202 - 697 2.7e-37 124.2 111.8 16 16 1.2e-05 0.015 16.1 0.7 1 23 673 695 673 696 0.96 C2H2-type zinc finger KRAB PF01352.27 42 ZNF7-202 - 697 1.5e-21 75.7 0.0 1 1 2.4e-24 2.9e-21 74.8 0.0 2 42 15 55 14 55 0.97 KRAB box XPA_N PF01286.18 32 ZNF7-202 - 697 6e-13 48.6 76.0 1 16 0.067 80 3.4 0.2 3 10 208 215 206 218 0.84 XPA protein N-terminal XPA_N PF01286.18 32 ZNF7-202 - 697 6e-13 48.6 76.0 2 16 0.067 80 3.4 2.5 3 13 235 245 234 247 0.89 XPA protein N-terminal XPA_N PF01286.18 32 ZNF7-202 - 697 6e-13 48.6 76.0 3 16 0.14 1.6e+02 2.4 0.5 3 11 262 270 260 277 0.88 XPA protein N-terminal XPA_N PF01286.18 32 ZNF7-202 - 697 6e-13 48.6 76.0 4 16 0.0052 6.3 6.9 0.1 3 14 290 301 288 307 0.78 XPA protein N-terminal XPA_N PF01286.18 32 ZNF7-202 - 697 6e-13 48.6 76.0 5 16 0.00087 1 9.4 0.2 3 14 318 329 316 330 0.91 XPA protein N-terminal XPA_N PF01286.18 32 ZNF7-202 - 697 6e-13 48.6 76.0 6 16 0.0094 11 6.1 0.1 4 13 347 356 345 363 0.78 XPA protein N-terminal XPA_N PF01286.18 32 ZNF7-202 - 697 6e-13 48.6 76.0 7 16 0.0037 4.4 7.4 0.2 4 14 375 385 373 389 0.93 XPA protein N-terminal XPA_N PF01286.18 32 ZNF7-202 - 697 6e-13 48.6 76.0 8 16 0.0038 4.5 7.4 0.1 3 11 425 433 423 442 0.86 XPA protein N-terminal XPA_N PF01286.18 32 ZNF7-202 - 697 6e-13 48.6 76.0 9 16 0.084 1e+02 3.1 0.3 3 14 453 464 451 470 0.83 XPA protein N-terminal XPA_N PF01286.18 32 ZNF7-202 - 697 6e-13 48.6 76.0 10 16 0.0042 5.1 7.2 0.1 3 12 481 490 479 498 0.84 XPA protein N-terminal XPA_N PF01286.18 32 ZNF7-202 - 697 6e-13 48.6 76.0 11 16 0.011 13 5.9 0.2 3 14 509 520 507 521 0.91 XPA protein N-terminal XPA_N PF01286.18 32 ZNF7-202 - 697 6e-13 48.6 76.0 12 16 0.011 13 5.9 0.1 3 14 537 548 535 553 0.88 XPA protein N-terminal XPA_N PF01286.18 32 ZNF7-202 - 697 6e-13 48.6 76.0 13 16 0.0038 4.5 7.4 0.2 3 18 565 581 563 582 0.75 XPA protein N-terminal XPA_N PF01286.18 32 ZNF7-202 - 697 6e-13 48.6 76.0 14 16 0.00078 0.93 9.6 0.2 3 17 593 607 591 610 0.77 XPA protein N-terminal XPA_N PF01286.18 32 ZNF7-202 - 697 6e-13 48.6 76.0 15 16 0.087 1e+02 3.0 0.5 3 11 646 654 645 656 0.90 XPA protein N-terminal XPA_N PF01286.18 32 ZNF7-202 - 697 6e-13 48.6 76.0 16 16 0.011 13 5.9 0.1 3 14 674 685 672 691 0.87 XPA protein N-terminal Zn-ribbon_8 PF09723.10 40 ZNF7-202 - 697 1.1e-12 47.8 79.5 1 16 0.21 2.6e+02 1.9 0.5 7 34 208 214 191 219 0.65 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF7-202 - 697 1.1e-12 47.8 79.5 2 16 0.27 3.3e+02 1.5 3.8 7 35 208 242 206 247 0.65 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF7-202 - 697 1.1e-12 47.8 79.5 3 16 0.00017 0.2 11.8 5.3 6 36 261 298 260 300 0.90 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF7-202 - 697 1.1e-12 47.8 79.5 4 16 9.6e-05 0.11 12.6 4.5 6 34 289 324 288 329 0.92 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF7-202 - 697 1.1e-12 47.8 79.5 5 16 5.2e-05 0.063 13.4 4.0 6 36 317 354 316 357 0.91 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF7-202 - 697 1.1e-12 47.8 79.5 6 16 0.00017 0.21 11.7 3.3 6 35 345 381 344 385 0.87 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF7-202 - 697 1.1e-12 47.8 79.5 7 16 0.02 24 5.1 0.3 6 17 373 384 371 397 0.77 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF7-202 - 697 1.1e-12 47.8 79.5 8 16 0.0014 1.7 8.8 2.5 6 33 424 458 423 463 0.86 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF7-202 - 697 1.1e-12 47.8 79.5 9 16 0.025 30 4.9 4.8 6 34 452 487 451 492 0.86 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF7-202 - 697 1.1e-12 47.8 79.5 10 16 0.0001 0.12 12.5 2.0 6 35 480 516 478 520 0.91 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF7-202 - 697 1.1e-12 47.8 79.5 11 16 8.8e-05 0.1 12.7 1.5 6 34 508 543 506 548 0.90 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF7-202 - 697 1.1e-12 47.8 79.5 12 16 6.9e-05 0.082 13.0 2.7 6 35 536 572 534 576 0.90 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF7-202 - 697 1.1e-12 47.8 79.5 13 16 0.00016 0.19 11.9 4.3 6 38 564 603 563 605 0.83 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF7-202 - 697 1.1e-12 47.8 79.5 14 16 0.0082 9.8 6.4 0.6 6 17 592 603 591 616 0.83 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF7-202 - 697 1.1e-12 47.8 79.5 15 16 0.00021 0.25 11.5 1.5 7 38 646 684 621 685 0.91 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF7-202 - 697 1.1e-12 47.8 79.5 16 16 0.0015 1.8 8.7 0.1 6 19 673 686 672 693 0.81 Zinc ribbon domain zf_UBZ PF18439.1 32 ZNF7-202 - 697 1.7e-09 37.1 73.7 1 16 0.024 28 4.4 0.1 3 15 207 219 206 225 0.79 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF7-202 - 697 1.7e-09 37.1 73.7 2 16 0.29 3.4e+02 0.9 1.5 5 14 236 245 234 252 0.81 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF7-202 - 697 1.7e-09 37.1 73.7 3 16 0.0078 9.3 5.9 0.7 3 21 261 280 259 280 0.80 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF7-202 - 697 1.7e-09 37.1 73.7 4 16 0.0071 8.5 6.1 0.1 3 21 289 308 287 308 0.84 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF7-202 - 697 1.7e-09 37.1 73.7 5 16 0.0086 10 5.8 0.2 3 15 317 329 315 336 0.77 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF7-202 - 697 1.7e-09 37.1 73.7 6 16 0.044 53 3.5 0.1 3 17 345 360 344 364 0.77 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF7-202 - 697 1.7e-09 37.1 73.7 7 16 0.00027 0.32 10.6 0.1 3 21 373 392 371 392 0.92 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF7-202 - 697 1.7e-09 37.1 73.7 8 16 0.014 17 5.1 0.1 3 12 424 433 422 443 0.85 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF7-202 - 697 1.7e-09 37.1 73.7 9 16 0.37 4.5e+02 0.6 0.5 3 12 452 461 450 470 0.83 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF7-202 - 697 1.7e-09 37.1 73.7 10 16 0.016 19 4.9 0.2 3 12 480 489 478 499 0.78 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF7-202 - 697 1.7e-09 37.1 73.7 11 16 0.0045 5.4 6.7 0.1 3 15 508 520 506 527 0.82 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF7-202 - 697 1.7e-09 37.1 73.7 12 16 0.0047 5.6 6.7 0.1 3 20 536 554 534 555 0.84 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF7-202 - 697 1.7e-09 37.1 73.7 13 16 0.0079 9.5 5.9 0.1 3 16 564 578 562 583 0.80 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF7-202 - 697 1.7e-09 37.1 73.7 14 16 0.00071 0.85 9.3 0.2 3 21 592 611 590 611 0.88 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF7-202 - 697 1.7e-09 37.1 73.7 15 16 0.53 6.4e+02 0.1 0.4 3 11 645 653 643 655 0.82 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF7-202 - 697 1.7e-09 37.1 73.7 16 16 0.0085 10 5.8 0.1 3 21 673 692 671 692 0.84 Ubiquitin-Binding Zinc Finger zf-C2H2_6 PF13912.6 27 ZNF7-202 - 697 4e-08 33.1 105.4 1 16 1.8 2.1e+03 -1.1 0.5 3 9 208 214 208 215 0.90 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF7-202 - 697 4e-08 33.1 105.4 2 16 0.93 1.1e+03 -0.2 0.7 3 9 235 241 235 244 0.83 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF7-202 - 697 4e-08 33.1 105.4 3 16 0.001 1.2 9.2 1.2 2 12 261 271 261 283 0.84 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF7-202 - 697 4e-08 33.1 105.4 4 16 0.0012 1.4 9.0 0.3 2 12 289 299 289 309 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF7-202 - 697 4e-08 33.1 105.4 5 16 0.003 3.6 7.7 0.9 2 22 317 337 317 341 0.84 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF7-202 - 697 4e-08 33.1 105.4 6 16 0.003 3.5 7.7 1.1 2 24 345 367 345 370 0.91 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF7-202 - 697 4e-08 33.1 105.4 7 16 0.0023 2.8 8.1 0.5 2 12 373 383 373 385 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF7-202 - 697 4e-08 33.1 105.4 8 16 0.00067 0.81 9.8 0.1 2 12 424 434 424 436 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF7-202 - 697 4e-08 33.1 105.4 9 16 0.2 2.3e+02 1.9 2.2 2 24 452 474 452 477 0.74 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF7-202 - 697 4e-08 33.1 105.4 10 16 0.0004 0.48 10.5 0.8 2 22 480 500 480 504 0.84 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF7-202 - 697 4e-08 33.1 105.4 11 16 0.018 21 5.2 0.5 2 25 508 531 508 533 0.84 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF7-202 - 697 4e-08 33.1 105.4 12 16 0.0046 5.5 7.1 0.4 2 22 536 556 536 560 0.83 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF7-202 - 697 4e-08 33.1 105.4 13 16 0.0018 2.1 8.4 0.7 2 12 564 574 564 577 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF7-202 - 697 4e-08 33.1 105.4 14 16 0.00011 0.13 12.2 0.6 2 21 592 611 592 616 0.81 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF7-202 - 697 4e-08 33.1 105.4 15 16 7.1 8.5e+03 -3.1 0.4 2 11 645 654 644 655 0.84 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF7-202 - 697 4e-08 33.1 105.4 16 16 0.0089 11 6.2 0.7 2 25 673 696 673 697 0.85 C2H2-type zinc finger # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF7-202.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF7-202.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF7-202.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF7-202.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF7-202.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:13:22 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- KRAB PF01352.27 42 ZNF7-203 - 148 2.2e-22 78.4 0.0 1 1 1.6e-26 2.9e-22 78.0 0.0 2 42 4 44 3 44 0.97 KRAB box # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF7-203.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF7-203.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF7-203.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF7-203.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF7-203.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:13:22 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF7-204.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF7-204.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF7-204.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF7-204.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF7-204.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:13:22 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZNF7-205 - 590 1e-103 335.5 104.2 1 18 2.9 3.3e+03 -1.2 0.2 16 22 101 107 100 108 0.87 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF7-205 - 590 1e-103 335.5 104.2 2 18 6.5e-06 0.0073 16.7 2.4 8 24 143 163 141 164 0.85 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF7-205 - 590 1e-103 335.5 104.2 3 18 1.5e-11 1.7e-08 34.5 0.5 2 24 169 191 168 192 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF7-205 - 590 1e-103 335.5 104.2 4 18 2.6e-11 2.9e-08 33.7 0.2 2 25 197 220 196 221 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF7-205 - 590 1e-103 335.5 104.2 5 18 1.7e-08 1.9e-05 24.9 0.3 2 25 225 248 224 249 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF7-205 - 590 1e-103 335.5 104.2 6 18 3.5e-12 3.9e-09 36.5 0.5 2 25 253 276 252 277 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF7-205 - 590 1e-103 335.5 104.2 7 18 0.0076 8.5 7.0 0.0 2 13 281 292 280 296 0.90 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF7-205 - 590 1e-103 335.5 104.2 8 18 1.1e-09 1.2e-06 28.6 0.1 1 24 303 326 303 327 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF7-205 - 590 1e-103 335.5 104.2 9 18 7.7e-10 8.6e-07 29.1 2.1 2 25 332 355 331 356 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF7-205 - 590 1e-103 335.5 104.2 10 18 5.1e-12 5.7e-09 36.0 0.4 2 25 360 383 359 384 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF7-205 - 590 1e-103 335.5 104.2 11 18 1.2e-10 1.3e-07 31.7 0.2 1 25 387 411 387 412 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF7-205 - 590 1e-103 335.5 104.2 12 18 1.5e-10 1.7e-07 31.4 0.3 2 25 416 439 415 439 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF7-205 - 590 1e-103 335.5 104.2 13 18 7.9e-11 8.9e-08 32.2 0.2 2 25 444 467 443 468 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF7-205 - 590 1e-103 335.5 104.2 14 18 1.5e-08 1.6e-05 25.1 0.1 4 25 474 495 472 496 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF7-205 - 590 1e-103 335.5 104.2 15 18 1.4 1.6e+03 -0.2 0.0 2 10 500 508 499 518 0.87 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF7-205 - 590 1e-103 335.5 104.2 16 18 0.037 41 4.8 0.2 12 24 535 547 527 548 0.84 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF7-205 - 590 1e-103 335.5 104.2 17 18 1.5e-10 1.7e-07 31.4 0.6 4 25 555 576 552 577 0.90 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF7-205 - 590 1e-103 335.5 104.2 18 18 1.2 1.3e+03 0.1 0.3 2 11 581 590 580 590 0.89 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZNF7-205 - 590 2.4e-79 257.6 105.8 1 17 0.077 87 3.9 0.0 2 19 101 118 100 121 0.85 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF7-205 - 590 2.4e-79 257.6 105.8 2 17 2.4 2.7e+03 -0.8 1.4 2 11 128 137 127 139 0.83 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF7-205 - 590 2.4e-79 257.6 105.8 3 17 1.4e-07 0.00016 22.0 1.0 1 23 154 176 154 176 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF7-205 - 590 2.4e-79 257.6 105.8 4 17 7.9e-08 8.9e-05 22.7 0.7 1 23 182 204 182 204 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF7-205 - 590 2.4e-79 257.6 105.8 5 17 1.1e-08 1.2e-05 25.5 0.6 1 23 210 232 210 232 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF7-205 - 590 2.4e-79 257.6 105.8 6 17 2.3e-09 2.5e-06 27.6 0.5 3 23 240 260 238 260 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF7-205 - 590 2.4e-79 257.6 105.8 7 17 2.7e-09 3.1e-06 27.4 0.4 1 23 266 288 266 288 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF7-205 - 590 2.4e-79 257.6 105.8 8 17 0.33 3.7e+02 1.9 0.0 12 23 300 311 298 311 0.86 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF7-205 - 590 2.4e-79 257.6 105.8 9 17 0.00014 0.16 12.5 0.2 1 23 317 339 317 339 0.94 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF7-205 - 590 2.4e-79 257.6 105.8 10 17 4.2e-05 0.047 14.2 4.4 1 23 345 367 345 367 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF7-205 - 590 2.4e-79 257.6 105.8 11 17 9.7e-08 0.00011 22.5 0.4 1 23 373 395 373 395 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF7-205 - 590 2.4e-79 257.6 105.8 12 17 1.2e-09 1.3e-06 28.5 0.3 1 23 401 423 401 423 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF7-205 - 590 2.4e-79 257.6 105.8 13 17 3e-07 0.00033 20.9 0.3 1 23 429 451 429 451 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF7-205 - 590 2.4e-79 257.6 105.8 14 17 1.5e-08 1.7e-05 25.0 0.5 1 23 457 479 457 479 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF7-205 - 590 2.4e-79 257.6 105.8 15 17 3.6e-09 4e-06 27.0 0.3 1 23 485 507 485 507 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF7-205 - 590 2.4e-79 257.6 105.8 16 17 6.2e-06 0.007 16.8 1.9 1 23 538 560 538 560 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF7-205 - 590 2.4e-79 257.6 105.8 17 17 3.5e-09 3.9e-06 27.0 1.2 1 23 566 588 566 588 0.99 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZNF7-205 - 590 1.4e-38 128.2 111.8 1 16 2.4 2.6e+03 -0.2 0.0 2 9 101 108 101 120 0.74 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF7-205 - 590 1.4e-38 128.2 111.8 2 16 5.7 6.4e+03 -1.4 4.9 2 24 128 149 127 149 0.84 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF7-205 - 590 1.4e-38 128.2 111.8 3 16 4.4e-05 0.049 14.5 1.3 1 23 154 176 154 177 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF7-205 - 590 1.4e-38 128.2 111.8 4 16 2.4e-05 0.027 15.3 0.7 1 23 182 204 182 205 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF7-205 - 590 1.4e-38 128.2 111.8 5 16 1.9e-05 0.021 15.6 0.7 1 23 210 232 210 233 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF7-205 - 590 1.4e-38 128.2 111.8 6 16 3.9e-06 0.0043 17.8 0.6 2 23 239 260 238 261 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF7-205 - 590 1.4e-38 128.2 111.8 7 16 4.1e-06 0.0046 17.7 0.5 1 23 266 288 266 289 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF7-205 - 590 1.4e-38 128.2 111.8 8 16 0.0014 1.6 9.8 0.4 1 23 317 339 317 340 0.85 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF7-205 - 590 1.4e-38 128.2 111.8 9 16 2.2e-05 0.025 15.4 3.2 1 23 345 367 345 368 0.97 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF7-205 - 590 1.4e-38 128.2 111.8 10 16 3.6e-05 0.04 14.8 0.5 1 23 373 395 373 396 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF7-205 - 590 1.4e-38 128.2 111.8 11 16 2.7e-05 0.03 15.1 0.4 1 23 401 423 401 424 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF7-205 - 590 1.4e-38 128.2 111.8 12 16 0.00015 0.17 12.8 0.4 1 23 429 451 429 452 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF7-205 - 590 1.4e-38 128.2 111.8 13 16 2e-05 0.022 15.6 0.3 1 23 457 479 457 480 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF7-205 - 590 1.4e-38 128.2 111.8 14 16 2.4e-05 0.027 15.3 0.4 1 23 485 507 485 508 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF7-205 - 590 1.4e-38 128.2 111.8 15 16 0.032 36 5.6 1.7 1 23 538 560 538 561 0.83 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF7-205 - 590 1.4e-38 128.2 111.8 16 16 1.1e-05 0.012 16.4 0.7 1 23 566 588 566 589 0.96 C2H2-type zinc finger XPA_N PF01286.18 32 ZNF7-205 - 590 3.4e-14 52.6 76.0 1 16 0.059 66 3.7 0.2 3 10 101 108 99 111 0.84 XPA protein N-terminal XPA_N PF01286.18 32 ZNF7-205 - 590 3.4e-14 52.6 76.0 2 16 0.06 67 3.7 2.5 3 13 128 138 127 140 0.89 XPA protein N-terminal XPA_N PF01286.18 32 ZNF7-205 - 590 3.4e-14 52.6 76.0 3 16 0.12 1.4e+02 2.7 0.5 3 11 155 163 153 170 0.88 XPA protein N-terminal XPA_N PF01286.18 32 ZNF7-205 - 590 3.4e-14 52.6 76.0 4 16 0.0046 5.2 7.2 0.1 3 14 183 194 181 200 0.78 XPA protein N-terminal XPA_N PF01286.18 32 ZNF7-205 - 590 3.4e-14 52.6 76.0 5 16 0.00077 0.87 9.7 0.2 3 14 211 222 209 223 0.91 XPA protein N-terminal XPA_N PF01286.18 32 ZNF7-205 - 590 3.4e-14 52.6 76.0 6 16 0.0083 9.3 6.4 0.1 4 13 240 249 238 256 0.78 XPA protein N-terminal XPA_N PF01286.18 32 ZNF7-205 - 590 3.4e-14 52.6 76.0 7 16 0.0033 3.6 7.7 0.2 4 14 268 278 266 282 0.93 XPA protein N-terminal XPA_N PF01286.18 32 ZNF7-205 - 590 3.4e-14 52.6 76.0 8 16 0.0034 3.8 7.6 0.1 3 11 318 326 316 335 0.86 XPA protein N-terminal XPA_N PF01286.18 32 ZNF7-205 - 590 3.4e-14 52.6 76.0 9 16 0.075 84 3.3 0.3 3 14 346 357 344 363 0.83 XPA protein N-terminal XPA_N PF01286.18 32 ZNF7-205 - 590 3.4e-14 52.6 76.0 10 16 0.0038 4.2 7.5 0.1 3 12 374 383 372 391 0.84 XPA protein N-terminal XPA_N PF01286.18 32 ZNF7-205 - 590 3.4e-14 52.6 76.0 11 16 0.0098 11 6.2 0.2 3 14 402 413 400 414 0.91 XPA protein N-terminal XPA_N PF01286.18 32 ZNF7-205 - 590 3.4e-14 52.6 76.0 12 16 0.0098 11 6.2 0.1 3 14 430 441 428 446 0.88 XPA protein N-terminal XPA_N PF01286.18 32 ZNF7-205 - 590 3.4e-14 52.6 76.0 13 16 0.0034 3.8 7.6 0.2 3 18 458 474 456 475 0.75 XPA protein N-terminal XPA_N PF01286.18 32 ZNF7-205 - 590 3.4e-14 52.6 76.0 14 16 0.00069 0.77 9.8 0.2 3 17 486 500 484 503 0.77 XPA protein N-terminal XPA_N PF01286.18 32 ZNF7-205 - 590 3.4e-14 52.6 76.0 15 16 0.077 87 3.3 0.5 3 11 539 547 538 549 0.90 XPA protein N-terminal XPA_N PF01286.18 32 ZNF7-205 - 590 3.4e-14 52.6 76.0 16 16 0.0097 11 6.2 0.1 3 14 567 578 565 584 0.87 XPA protein N-terminal Zn-ribbon_8 PF09723.10 40 ZNF7-205 - 590 3.8e-13 49.3 80.9 1 16 0.59 6.7e+02 0.5 5.2 7 35 101 135 84 140 0.71 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF7-205 - 590 3.8e-13 49.3 80.9 2 16 0.93 1e+03 -0.1 0.7 7 14 128 135 126 144 0.79 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF7-205 - 590 3.8e-13 49.3 80.9 3 16 0.00015 0.17 12.0 5.3 6 36 154 191 153 193 0.90 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF7-205 - 590 3.8e-13 49.3 80.9 4 16 8.5e-05 0.095 12.8 4.5 6 34 182 217 181 221 0.92 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF7-205 - 590 3.8e-13 49.3 80.9 5 16 4.6e-05 0.052 13.7 4.1 6 36 210 247 209 250 0.91 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF7-205 - 590 3.8e-13 49.3 80.9 6 16 0.00016 0.17 12.0 3.4 6 35 238 274 237 279 0.87 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF7-205 - 590 3.8e-13 49.3 80.9 7 16 0.017 19 5.5 0.3 6 17 266 277 265 292 0.75 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF7-205 - 590 3.8e-13 49.3 80.9 8 16 0.00071 0.8 9.9 1.7 6 33 317 351 316 354 0.86 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF7-205 - 590 3.8e-13 49.3 80.9 9 16 0.028 31 4.8 5.2 6 34 345 380 343 385 0.87 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF7-205 - 590 3.8e-13 49.3 80.9 10 16 0.00011 0.12 12.5 2.3 6 35 373 409 372 413 0.91 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF7-205 - 590 3.8e-13 49.3 80.9 11 16 6.6e-05 0.074 13.2 1.4 6 34 401 436 399 444 0.90 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF7-205 - 590 3.8e-13 49.3 80.9 12 16 5.8e-05 0.065 13.4 2.6 6 35 429 465 428 469 0.90 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF7-205 - 590 3.8e-13 49.3 80.9 13 16 0.00017 0.19 11.9 4.5 6 38 457 496 456 497 0.82 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF7-205 - 590 3.8e-13 49.3 80.9 14 16 0.0069 7.7 6.7 0.6 6 17 485 496 482 509 0.83 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF7-205 - 590 3.8e-13 49.3 80.9 15 16 0.00016 0.18 12.0 1.3 7 38 539 577 514 578 0.91 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF7-205 - 590 3.8e-13 49.3 80.9 16 16 0.0014 1.5 9.0 0.1 6 19 566 579 565 586 0.81 Zinc ribbon domain zf_UBZ PF18439.1 32 ZNF7-205 - 590 1e-10 41.0 73.7 1 16 0.021 24 4.7 0.1 3 15 100 112 99 118 0.79 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF7-205 - 590 1e-10 41.0 73.7 2 16 0.25 2.8e+02 1.2 1.5 5 14 129 138 127 145 0.81 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF7-205 - 590 1e-10 41.0 73.7 3 16 0.0069 7.7 6.2 0.7 3 21 154 173 152 173 0.80 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF7-205 - 590 1e-10 41.0 73.7 4 16 0.0063 7 6.3 0.1 3 21 182 201 180 201 0.84 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF7-205 - 590 1e-10 41.0 73.7 5 16 0.0076 8.5 6.1 0.2 3 15 210 222 208 229 0.77 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF7-205 - 590 1e-10 41.0 73.7 6 16 0.039 44 3.8 0.1 3 17 238 253 237 257 0.77 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF7-205 - 590 1e-10 41.0 73.7 7 16 0.00023 0.26 10.9 0.1 3 21 266 285 264 285 0.92 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF7-205 - 590 1e-10 41.0 73.7 8 16 0.013 14 5.4 0.1 3 12 317 326 315 336 0.85 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF7-205 - 590 1e-10 41.0 73.7 9 16 0.33 3.7e+02 0.8 0.5 3 12 345 354 343 363 0.83 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF7-205 - 590 1e-10 41.0 73.7 10 16 0.014 16 5.2 0.2 3 12 373 382 371 392 0.78 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF7-205 - 590 1e-10 41.0 73.7 11 16 0.004 4.5 7.0 0.1 3 15 401 413 399 420 0.82 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF7-205 - 590 1e-10 41.0 73.7 12 16 0.0041 4.6 6.9 0.1 3 20 429 447 427 448 0.84 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF7-205 - 590 1e-10 41.0 73.7 13 16 0.007 7.8 6.2 0.1 3 16 457 471 455 476 0.80 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF7-205 - 590 1e-10 41.0 73.7 14 16 0.00063 0.7 9.5 0.2 3 21 485 504 483 504 0.88 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF7-205 - 590 1e-10 41.0 73.7 15 16 0.48 5.3e+02 0.3 0.4 3 11 538 546 536 548 0.82 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF7-205 - 590 1e-10 41.0 73.7 16 16 0.0075 8.4 6.1 0.1 3 21 566 585 564 585 0.84 Ubiquitin-Binding Zinc Finger zf-C2H2_6 PF13912.6 27 ZNF7-205 - 590 2.4e-09 37.0 105.4 1 16 1.6 1.8e+03 -0.9 0.5 3 9 101 107 101 108 0.90 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF7-205 - 590 2.4e-09 37.0 105.4 2 16 0.83 9.3e+02 0.0 0.7 3 9 128 134 128 137 0.83 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF7-205 - 590 2.4e-09 37.0 105.4 3 16 0.00089 1 9.5 1.2 2 12 154 164 154 176 0.84 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF7-205 - 590 2.4e-09 37.0 105.4 4 16 0.001 1.2 9.3 0.3 2 12 182 192 182 202 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF7-205 - 590 2.4e-09 37.0 105.4 5 16 0.0027 3 7.9 0.9 2 22 210 230 210 234 0.84 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF7-205 - 590 2.4e-09 37.0 105.4 6 16 0.0026 2.9 8.0 1.1 2 24 238 260 238 263 0.91 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF7-205 - 590 2.4e-09 37.0 105.4 7 16 0.0021 2.3 8.3 0.5 2 12 266 276 266 278 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF7-205 - 590 2.4e-09 37.0 105.4 8 16 0.0006 0.67 10.0 0.1 2 12 317 327 317 329 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF7-205 - 590 2.4e-09 37.0 105.4 9 16 0.17 1.9e+02 2.2 2.2 2 24 345 367 345 370 0.74 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF7-205 - 590 2.4e-09 37.0 105.4 10 16 0.00035 0.39 10.8 0.8 2 22 373 393 373 397 0.84 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF7-205 - 590 2.4e-09 37.0 105.4 11 16 0.016 17 5.5 0.5 2 25 401 424 401 426 0.84 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF7-205 - 590 2.4e-09 37.0 105.4 12 16 0.0041 4.6 7.4 0.4 2 22 429 449 429 453 0.83 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF7-205 - 590 2.4e-09 37.0 105.4 13 16 0.0016 1.8 8.7 0.7 2 12 457 467 457 470 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF7-205 - 590 2.4e-09 37.0 105.4 14 16 9.9e-05 0.11 12.5 0.6 2 21 485 504 485 509 0.81 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF7-205 - 590 2.4e-09 37.0 105.4 15 16 6.3 7.1e+03 -2.8 0.4 2 11 538 547 537 548 0.84 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF7-205 - 590 2.4e-09 37.0 105.4 16 16 0.0078 8.7 6.5 0.7 2 25 566 589 566 590 0.85 C2H2-type zinc finger # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF7-205.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF7-205.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF7-205.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF7-205.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF7-205.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:13:23 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- KRAB PF01352.27 42 ZNF7-206 - 134 1.8e-22 78.7 0.0 1 1 2.7e-26 2.4e-22 78.3 0.0 2 42 4 44 3 44 0.97 KRAB box # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF7-206.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF7-206.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF7-206.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF7-206.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF7-206.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:13:23 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZNF7-207 - 686 8e-103 332.7 102.9 1 18 3.2 3.8e+03 -1.4 0.2 16 22 197 203 196 204 0.87 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF7-207 - 686 8e-103 332.7 102.9 2 18 7.3e-06 0.0087 16.5 2.4 8 24 239 259 237 260 0.85 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF7-207 - 686 8e-103 332.7 102.9 3 18 1.7e-11 2e-08 34.3 0.5 2 24 265 287 264 288 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF7-207 - 686 8e-103 332.7 102.9 4 18 2.9e-11 3.5e-08 33.5 0.2 2 25 293 316 292 317 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF7-207 - 686 8e-103 332.7 102.9 5 18 1.9e-08 2.3e-05 24.6 0.3 2 25 321 344 320 345 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF7-207 - 686 8e-103 332.7 102.9 6 18 3.9e-12 4.7e-09 36.3 0.5 2 25 349 372 348 373 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF7-207 - 686 8e-103 332.7 102.9 7 18 0.0084 10 6.8 0.0 2 13 377 388 376 392 0.90 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF7-207 - 686 8e-103 332.7 102.9 8 18 1.2e-09 1.5e-06 28.4 0.1 1 24 399 422 399 423 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF7-207 - 686 8e-103 332.7 102.9 9 18 8.6e-10 1e-06 28.9 2.1 2 25 428 451 427 452 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF7-207 - 686 8e-103 332.7 102.9 10 18 5.7e-12 6.8e-09 35.8 0.4 2 25 456 479 455 480 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF7-207 - 686 8e-103 332.7 102.9 11 18 1.3e-10 1.6e-07 31.5 0.2 1 25 483 507 483 508 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF7-207 - 686 8e-103 332.7 102.9 12 18 1.7e-10 2e-07 31.1 0.3 2 25 512 535 511 535 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF7-207 - 686 8e-103 332.7 102.9 13 18 8.8e-11 1.1e-07 32.0 0.2 2 25 540 563 539 564 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF7-207 - 686 8e-103 332.7 102.9 14 18 1.6e-08 1.9e-05 24.8 0.1 4 25 570 591 568 592 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF7-207 - 686 8e-103 332.7 102.9 15 18 1.6 1.9e+03 -0.4 0.0 2 10 596 604 595 615 0.87 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF7-207 - 686 8e-103 332.7 102.9 16 18 0.039 47 4.7 0.2 12 24 631 643 619 644 0.86 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF7-207 - 686 8e-103 332.7 102.9 17 18 1.6e-10 2e-07 31.1 0.6 4 25 651 672 648 673 0.90 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF7-207 - 686 8e-103 332.7 102.9 18 18 1.3 1.6e+03 -0.2 0.3 2 11 677 686 676 686 0.89 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZNF7-207 - 686 3.6e-78 253.9 105.8 1 17 0.086 1e+02 3.6 0.0 2 19 197 214 196 217 0.85 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF7-207 - 686 3.6e-78 253.9 105.8 2 17 2.7 3.2e+03 -1.0 1.4 2 11 224 233 223 235 0.83 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF7-207 - 686 3.6e-78 253.9 105.8 3 17 1.5e-07 0.00019 21.7 1.0 1 23 250 272 250 272 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF7-207 - 686 3.6e-78 253.9 105.8 4 17 8.9e-08 0.00011 22.5 0.7 1 23 278 300 278 300 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF7-207 - 686 3.6e-78 253.9 105.8 5 17 1.2e-08 1.4e-05 25.2 0.6 1 23 306 328 306 328 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF7-207 - 686 3.6e-78 253.9 105.8 6 17 2.5e-09 3e-06 27.4 0.5 3 23 336 356 334 356 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF7-207 - 686 3.6e-78 253.9 105.8 7 17 3e-09 3.6e-06 27.1 0.4 1 23 362 384 362 384 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF7-207 - 686 3.6e-78 253.9 105.8 8 17 0.37 4.4e+02 1.7 0.0 12 23 396 407 394 407 0.86 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF7-207 - 686 3.6e-78 253.9 105.8 9 17 0.00016 0.19 12.3 0.2 1 23 413 435 413 435 0.94 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF7-207 - 686 3.6e-78 253.9 105.8 10 17 4.7e-05 0.056 13.9 4.4 1 23 441 463 441 463 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF7-207 - 686 3.6e-78 253.9 105.8 11 17 1.1e-07 0.00013 22.2 0.4 1 23 469 491 469 491 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF7-207 - 686 3.6e-78 253.9 105.8 12 17 1.3e-09 1.6e-06 28.2 0.3 1 23 497 519 497 519 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF7-207 - 686 3.6e-78 253.9 105.8 13 17 3.3e-07 0.0004 20.7 0.3 1 23 525 547 525 547 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF7-207 - 686 3.6e-78 253.9 105.8 14 17 1.7e-08 2.1e-05 24.7 0.5 1 23 553 575 553 575 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF7-207 - 686 3.6e-78 253.9 105.8 15 17 4e-09 4.8e-06 26.7 0.3 1 23 581 603 581 603 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF7-207 - 686 3.6e-78 253.9 105.8 16 17 7e-06 0.0083 16.5 1.9 1 23 634 656 634 656 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF7-207 - 686 3.6e-78 253.9 105.8 17 17 3.9e-09 4.6e-06 26.8 1.2 1 23 662 684 662 684 0.99 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZNF7-207 - 686 2.2e-37 124.5 111.8 1 16 2.6 3.1e+03 -0.5 0.0 2 9 197 204 197 216 0.74 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF7-207 - 686 2.2e-37 124.5 111.8 2 16 6.4 7.6e+03 -1.7 4.9 2 24 224 245 223 245 0.84 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF7-207 - 686 2.2e-37 124.5 111.8 3 16 4.9e-05 0.058 14.2 1.3 1 23 250 272 250 273 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF7-207 - 686 2.2e-37 124.5 111.8 4 16 2.7e-05 0.033 15.0 0.7 1 23 278 300 278 301 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF7-207 - 686 2.2e-37 124.5 111.8 5 16 2.1e-05 0.026 15.4 0.7 1 23 306 328 306 329 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF7-207 - 686 2.2e-37 124.5 111.8 6 16 4.3e-06 0.0052 17.5 0.6 2 23 335 356 334 357 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF7-207 - 686 2.2e-37 124.5 111.8 7 16 4.6e-06 0.0055 17.4 0.5 1 23 362 384 362 385 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF7-207 - 686 2.2e-37 124.5 111.8 8 16 0.0016 1.9 9.5 0.4 1 23 413 435 413 436 0.85 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF7-207 - 686 2.2e-37 124.5 111.8 9 16 2.5e-05 0.03 15.2 3.2 1 23 441 463 441 464 0.97 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF7-207 - 686 2.2e-37 124.5 111.8 10 16 4e-05 0.048 14.5 0.5 1 23 469 491 469 492 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF7-207 - 686 2.2e-37 124.5 111.8 11 16 3e-05 0.036 14.9 0.4 1 23 497 519 497 520 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF7-207 - 686 2.2e-37 124.5 111.8 12 16 0.00017 0.2 12.6 0.4 1 23 525 547 525 548 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF7-207 - 686 2.2e-37 124.5 111.8 13 16 2.2e-05 0.026 15.3 0.3 1 23 553 575 553 576 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF7-207 - 686 2.2e-37 124.5 111.8 14 16 2.7e-05 0.033 15.0 0.4 1 23 581 603 581 604 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF7-207 - 686 2.2e-37 124.5 111.8 15 16 0.036 43 5.3 1.7 1 23 634 656 634 657 0.83 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF7-207 - 686 2.2e-37 124.5 111.8 16 16 1.2e-05 0.014 16.2 0.7 1 23 662 684 662 685 0.96 C2H2-type zinc finger KRAB PF01352.27 42 ZNF7-207 - 686 1.5e-21 75.7 0.0 1 1 2.4e-24 2.8e-21 74.9 0.0 2 42 4 44 3 44 0.97 KRAB box XPA_N PF01286.18 32 ZNF7-207 - 686 4.6e-13 49.0 76.0 1 16 0.065 78 3.4 0.2 3 10 197 204 195 207 0.84 XPA protein N-terminal XPA_N PF01286.18 32 ZNF7-207 - 686 4.6e-13 49.0 76.0 2 16 0.066 79 3.4 2.5 3 13 224 234 223 236 0.89 XPA protein N-terminal XPA_N PF01286.18 32 ZNF7-207 - 686 4.6e-13 49.0 76.0 3 16 0.14 1.6e+02 2.4 0.5 3 11 251 259 249 266 0.88 XPA protein N-terminal XPA_N PF01286.18 32 ZNF7-207 - 686 4.6e-13 49.0 76.0 4 16 0.0051 6.2 7.0 0.1 3 14 279 290 277 296 0.78 XPA protein N-terminal XPA_N PF01286.18 32 ZNF7-207 - 686 4.6e-13 49.0 76.0 5 16 0.00086 1 9.5 0.2 3 14 307 318 305 319 0.91 XPA protein N-terminal XPA_N PF01286.18 32 ZNF7-207 - 686 4.6e-13 49.0 76.0 6 16 0.0092 11 6.2 0.1 4 13 336 345 334 352 0.78 XPA protein N-terminal XPA_N PF01286.18 32 ZNF7-207 - 686 4.6e-13 49.0 76.0 7 16 0.0036 4.3 7.5 0.2 4 14 364 374 362 378 0.93 XPA protein N-terminal XPA_N PF01286.18 32 ZNF7-207 - 686 4.6e-13 49.0 76.0 8 16 0.0037 4.5 7.4 0.1 3 11 414 422 412 431 0.86 XPA protein N-terminal XPA_N PF01286.18 32 ZNF7-207 - 686 4.6e-13 49.0 76.0 9 16 0.083 99 3.1 0.3 3 14 442 453 440 459 0.83 XPA protein N-terminal XPA_N PF01286.18 32 ZNF7-207 - 686 4.6e-13 49.0 76.0 10 16 0.0042 5 7.3 0.1 3 12 470 479 468 487 0.84 XPA protein N-terminal XPA_N PF01286.18 32 ZNF7-207 - 686 4.6e-13 49.0 76.0 11 16 0.011 13 5.9 0.2 3 14 498 509 496 510 0.91 XPA protein N-terminal XPA_N PF01286.18 32 ZNF7-207 - 686 4.6e-13 49.0 76.0 12 16 0.011 13 5.9 0.1 3 14 526 537 524 542 0.88 XPA protein N-terminal XPA_N PF01286.18 32 ZNF7-207 - 686 4.6e-13 49.0 76.0 13 16 0.0037 4.5 7.4 0.2 3 18 554 570 552 571 0.75 XPA protein N-terminal XPA_N PF01286.18 32 ZNF7-207 - 686 4.6e-13 49.0 76.0 14 16 0.00077 0.92 9.6 0.2 3 17 582 596 580 599 0.77 XPA protein N-terminal XPA_N PF01286.18 32 ZNF7-207 - 686 4.6e-13 49.0 76.0 15 16 0.085 1e+02 3.1 0.5 3 11 635 643 634 645 0.90 XPA protein N-terminal XPA_N PF01286.18 32 ZNF7-207 - 686 4.6e-13 49.0 76.0 16 16 0.011 13 5.9 0.1 3 14 663 674 661 680 0.87 XPA protein N-terminal Zn-ribbon_8 PF09723.10 40 ZNF7-207 - 686 1e-12 47.9 79.7 1 16 0.21 2.5e+02 1.9 0.5 7 34 197 203 180 208 0.65 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF7-207 - 686 1e-12 47.9 79.7 2 16 0.26 3.2e+02 1.6 3.8 7 35 197 231 195 236 0.65 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF7-207 - 686 1e-12 47.9 79.7 3 16 0.00016 0.2 11.8 5.3 6 36 250 287 249 290 0.90 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF7-207 - 686 1e-12 47.9 79.7 4 16 9.9e-05 0.12 12.5 4.6 6 34 278 313 277 318 0.92 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF7-207 - 686 1e-12 47.9 79.7 5 16 5.1e-05 0.061 13.5 4.0 6 36 306 343 305 346 0.91 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF7-207 - 686 1e-12 47.9 79.7 6 16 0.00016 0.2 11.8 3.3 6 35 334 370 333 374 0.87 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF7-207 - 686 1e-12 47.9 79.7 7 16 0.019 23 5.2 0.3 6 17 362 373 360 387 0.76 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF7-207 - 686 1e-12 47.9 79.7 8 16 0.0015 1.8 8.8 2.6 6 33 413 447 412 452 0.86 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF7-207 - 686 1e-12 47.9 79.7 9 16 0.031 38 4.5 5.1 6 34 441 476 440 480 0.86 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF7-207 - 686 1e-12 47.9 79.7 10 16 0.0001 0.12 12.5 2.0 6 35 469 505 468 509 0.91 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF7-207 - 686 1e-12 47.9 79.7 11 16 9.5e-05 0.11 12.6 1.6 6 34 497 532 495 536 0.90 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF7-207 - 686 1e-12 47.9 79.7 12 16 7.1e-05 0.084 13.0 2.8 6 35 525 561 523 565 0.90 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF7-207 - 686 1e-12 47.9 79.7 13 16 0.00016 0.19 11.8 4.4 6 38 553 592 552 594 0.83 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF7-207 - 686 1e-12 47.9 79.7 14 16 0.0081 9.6 6.4 0.6 6 17 581 592 580 605 0.83 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF7-207 - 686 1e-12 47.9 79.7 15 16 0.0002 0.24 11.6 1.4 7 38 635 673 610 674 0.91 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF7-207 - 686 1e-12 47.9 79.7 16 16 0.0015 1.8 8.7 0.1 6 19 662 675 661 682 0.81 Zinc ribbon domain zf_UBZ PF18439.1 32 ZNF7-207 - 686 1.3e-09 37.5 73.7 1 16 0.023 28 4.4 0.1 3 15 196 208 195 214 0.79 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF7-207 - 686 1.3e-09 37.5 73.7 2 16 0.28 3.4e+02 1.0 1.5 5 14 225 234 223 241 0.81 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF7-207 - 686 1.3e-09 37.5 73.7 3 16 0.0076 9.1 6.0 0.7 3 21 250 269 248 269 0.80 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF7-207 - 686 1.3e-09 37.5 73.7 4 16 0.007 8.3 6.1 0.1 3 21 278 297 276 297 0.84 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF7-207 - 686 1.3e-09 37.5 73.7 5 16 0.0084 10 5.8 0.2 3 15 306 318 304 325 0.77 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF7-207 - 686 1.3e-09 37.5 73.7 6 16 0.044 52 3.5 0.1 3 17 334 349 333 353 0.77 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF7-207 - 686 1.3e-09 37.5 73.7 7 16 0.00026 0.31 10.7 0.1 3 21 362 381 360 381 0.92 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF7-207 - 686 1.3e-09 37.5 73.7 8 16 0.014 17 5.1 0.1 3 12 413 422 411 432 0.85 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF7-207 - 686 1.3e-09 37.5 73.7 9 16 0.37 4.4e+02 0.6 0.5 3 12 441 450 439 459 0.83 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF7-207 - 686 1.3e-09 37.5 73.7 10 16 0.016 19 5.0 0.2 3 12 469 478 467 488 0.78 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF7-207 - 686 1.3e-09 37.5 73.7 11 16 0.0044 5.3 6.7 0.1 3 15 497 509 495 516 0.82 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF7-207 - 686 1.3e-09 37.5 73.7 12 16 0.0046 5.5 6.7 0.1 3 20 525 543 523 544 0.84 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF7-207 - 686 1.3e-09 37.5 73.7 13 16 0.0078 9.3 5.9 0.1 3 16 553 567 551 572 0.80 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF7-207 - 686 1.3e-09 37.5 73.7 14 16 0.0007 0.83 9.3 0.2 3 21 581 600 579 600 0.88 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF7-207 - 686 1.3e-09 37.5 73.7 15 16 0.53 6.3e+02 0.1 0.4 3 11 634 642 632 644 0.82 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF7-207 - 686 1.3e-09 37.5 73.7 16 16 0.0084 10 5.8 0.1 3 21 662 681 660 681 0.84 Ubiquitin-Binding Zinc Finger zf-C2H2_6 PF13912.6 27 ZNF7-207 - 686 3.1e-08 33.4 105.4 1 16 1.7 2.1e+03 -1.1 0.5 3 9 197 203 197 204 0.90 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF7-207 - 686 3.1e-08 33.4 105.4 2 16 0.92 1.1e+03 -0.2 0.7 3 9 224 230 224 233 0.83 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF7-207 - 686 3.1e-08 33.4 105.4 3 16 0.00099 1.2 9.2 1.2 2 12 250 260 250 272 0.84 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF7-207 - 686 3.1e-08 33.4 105.4 4 16 0.0011 1.4 9.0 0.3 2 12 278 288 278 298 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF7-207 - 686 3.1e-08 33.4 105.4 5 16 0.003 3.6 7.7 0.9 2 22 306 326 306 330 0.84 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF7-207 - 686 3.1e-08 33.4 105.4 6 16 0.0029 3.5 7.7 1.1 2 24 334 356 334 359 0.91 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF7-207 - 686 3.1e-08 33.4 105.4 7 16 0.0023 2.7 8.1 0.5 2 12 362 372 362 374 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF7-207 - 686 3.1e-08 33.4 105.4 8 16 0.00066 0.79 9.8 0.1 2 12 413 423 413 425 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF7-207 - 686 3.1e-08 33.4 105.4 9 16 0.19 2.3e+02 1.9 2.2 2 24 441 463 441 466 0.74 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF7-207 - 686 3.1e-08 33.4 105.4 10 16 0.00039 0.47 10.5 0.8 2 22 469 489 469 493 0.84 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF7-207 - 686 3.1e-08 33.4 105.4 11 16 0.017 21 5.3 0.5 2 25 497 520 497 522 0.84 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF7-207 - 686 3.1e-08 33.4 105.4 12 16 0.0045 5.4 7.1 0.4 2 22 525 545 525 549 0.83 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF7-207 - 686 3.1e-08 33.4 105.4 13 16 0.0018 2.1 8.4 0.7 2 12 553 563 553 566 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF7-207 - 686 3.1e-08 33.4 105.4 14 16 0.00011 0.13 12.3 0.6 2 21 581 600 581 605 0.81 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF7-207 - 686 3.1e-08 33.4 105.4 15 16 7 8.3e+03 -3.0 0.4 2 11 634 643 633 644 0.84 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF7-207 - 686 3.1e-08 33.4 105.4 16 16 0.0087 10 6.2 0.7 2 25 662 685 662 686 0.85 C2H2-type zinc finger # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF7-207.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF7-207.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF7-207.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF7-207.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF7-207.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:13:24 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF7-208.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF7-208.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF7-208.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF7-208.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF7-208.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:13:24 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- KRAB PF01352.27 42 ZNF7-209 - 86 6.8e-23 80.0 0.0 1 1 1e-26 9e-23 79.7 0.0 2 42 4 44 3 44 0.97 KRAB box # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF7-209.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF7-209.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF7-209.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF7-209.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF7-209.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:13:24 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF7-210.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF7-210.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF7-210.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF7-210.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF7-210.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:13:25 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- KRAB PF01352.27 42 ZNF7-211 - 124 1.4e-22 79.0 0.0 1 1 1.2e-26 2.1e-22 78.5 0.0 2 42 4 44 3 44 0.97 KRAB box # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF7-211.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF7-211.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF7-211.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF7-211.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF7-211.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:13:25 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF7-212.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF7-212.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF7-212.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF7-212.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF7-212.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:13:25 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF7-213.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF7-213.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF7-213.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF7-213.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF7-213.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:13:26 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF7-214.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF7-214.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF7-214.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF7-214.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF7-214.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:13:26 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF7-215.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF7-215.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF7-215.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF7-215.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF7-215.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:13:26 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF7-216.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF7-216.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF7-216.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF7-216.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF7-216.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:13:27 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF7-217.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF7-217.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF7-217.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF7-217.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF7-217.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:13:27 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZNF7-218 - 590 1e-103 335.5 104.2 1 18 2.9 3.3e+03 -1.2 0.2 16 22 101 107 100 108 0.87 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF7-218 - 590 1e-103 335.5 104.2 2 18 6.5e-06 0.0073 16.7 2.4 8 24 143 163 141 164 0.85 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF7-218 - 590 1e-103 335.5 104.2 3 18 1.5e-11 1.7e-08 34.5 0.5 2 24 169 191 168 192 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF7-218 - 590 1e-103 335.5 104.2 4 18 2.6e-11 2.9e-08 33.7 0.2 2 25 197 220 196 221 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF7-218 - 590 1e-103 335.5 104.2 5 18 1.7e-08 1.9e-05 24.9 0.3 2 25 225 248 224 249 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF7-218 - 590 1e-103 335.5 104.2 6 18 3.5e-12 3.9e-09 36.5 0.5 2 25 253 276 252 277 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF7-218 - 590 1e-103 335.5 104.2 7 18 0.0076 8.5 7.0 0.0 2 13 281 292 280 296 0.90 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF7-218 - 590 1e-103 335.5 104.2 8 18 1.1e-09 1.2e-06 28.6 0.1 1 24 303 326 303 327 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF7-218 - 590 1e-103 335.5 104.2 9 18 7.7e-10 8.6e-07 29.1 2.1 2 25 332 355 331 356 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF7-218 - 590 1e-103 335.5 104.2 10 18 5.1e-12 5.7e-09 36.0 0.4 2 25 360 383 359 384 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF7-218 - 590 1e-103 335.5 104.2 11 18 1.2e-10 1.3e-07 31.7 0.2 1 25 387 411 387 412 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF7-218 - 590 1e-103 335.5 104.2 12 18 1.5e-10 1.7e-07 31.4 0.3 2 25 416 439 415 439 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF7-218 - 590 1e-103 335.5 104.2 13 18 7.9e-11 8.9e-08 32.2 0.2 2 25 444 467 443 468 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF7-218 - 590 1e-103 335.5 104.2 14 18 1.5e-08 1.6e-05 25.1 0.1 4 25 474 495 472 496 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF7-218 - 590 1e-103 335.5 104.2 15 18 1.4 1.6e+03 -0.2 0.0 2 10 500 508 499 518 0.87 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF7-218 - 590 1e-103 335.5 104.2 16 18 0.037 41 4.8 0.2 12 24 535 547 527 548 0.84 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF7-218 - 590 1e-103 335.5 104.2 17 18 1.5e-10 1.7e-07 31.4 0.6 4 25 555 576 552 577 0.90 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF7-218 - 590 1e-103 335.5 104.2 18 18 1.2 1.3e+03 0.1 0.3 2 11 581 590 580 590 0.89 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZNF7-218 - 590 2.4e-79 257.6 105.8 1 17 0.077 87 3.9 0.0 2 19 101 118 100 121 0.85 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF7-218 - 590 2.4e-79 257.6 105.8 2 17 2.4 2.7e+03 -0.8 1.4 2 11 128 137 127 139 0.83 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF7-218 - 590 2.4e-79 257.6 105.8 3 17 1.4e-07 0.00016 22.0 1.0 1 23 154 176 154 176 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF7-218 - 590 2.4e-79 257.6 105.8 4 17 7.9e-08 8.9e-05 22.7 0.7 1 23 182 204 182 204 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF7-218 - 590 2.4e-79 257.6 105.8 5 17 1.1e-08 1.2e-05 25.5 0.6 1 23 210 232 210 232 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF7-218 - 590 2.4e-79 257.6 105.8 6 17 2.3e-09 2.5e-06 27.6 0.5 3 23 240 260 238 260 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF7-218 - 590 2.4e-79 257.6 105.8 7 17 2.7e-09 3.1e-06 27.4 0.4 1 23 266 288 266 288 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF7-218 - 590 2.4e-79 257.6 105.8 8 17 0.33 3.7e+02 1.9 0.0 12 23 300 311 298 311 0.86 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF7-218 - 590 2.4e-79 257.6 105.8 9 17 0.00014 0.16 12.5 0.2 1 23 317 339 317 339 0.94 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF7-218 - 590 2.4e-79 257.6 105.8 10 17 4.2e-05 0.047 14.2 4.4 1 23 345 367 345 367 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF7-218 - 590 2.4e-79 257.6 105.8 11 17 9.7e-08 0.00011 22.5 0.4 1 23 373 395 373 395 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF7-218 - 590 2.4e-79 257.6 105.8 12 17 1.2e-09 1.3e-06 28.5 0.3 1 23 401 423 401 423 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF7-218 - 590 2.4e-79 257.6 105.8 13 17 3e-07 0.00033 20.9 0.3 1 23 429 451 429 451 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF7-218 - 590 2.4e-79 257.6 105.8 14 17 1.5e-08 1.7e-05 25.0 0.5 1 23 457 479 457 479 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF7-218 - 590 2.4e-79 257.6 105.8 15 17 3.6e-09 4e-06 27.0 0.3 1 23 485 507 485 507 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF7-218 - 590 2.4e-79 257.6 105.8 16 17 6.2e-06 0.007 16.8 1.9 1 23 538 560 538 560 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF7-218 - 590 2.4e-79 257.6 105.8 17 17 3.5e-09 3.9e-06 27.0 1.2 1 23 566 588 566 588 0.99 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZNF7-218 - 590 1.4e-38 128.2 111.8 1 16 2.4 2.6e+03 -0.2 0.0 2 9 101 108 101 120 0.74 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF7-218 - 590 1.4e-38 128.2 111.8 2 16 5.7 6.4e+03 -1.4 4.9 2 24 128 149 127 149 0.84 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF7-218 - 590 1.4e-38 128.2 111.8 3 16 4.4e-05 0.049 14.5 1.3 1 23 154 176 154 177 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF7-218 - 590 1.4e-38 128.2 111.8 4 16 2.4e-05 0.027 15.3 0.7 1 23 182 204 182 205 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF7-218 - 590 1.4e-38 128.2 111.8 5 16 1.9e-05 0.021 15.6 0.7 1 23 210 232 210 233 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF7-218 - 590 1.4e-38 128.2 111.8 6 16 3.9e-06 0.0043 17.8 0.6 2 23 239 260 238 261 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF7-218 - 590 1.4e-38 128.2 111.8 7 16 4.1e-06 0.0046 17.7 0.5 1 23 266 288 266 289 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF7-218 - 590 1.4e-38 128.2 111.8 8 16 0.0014 1.6 9.8 0.4 1 23 317 339 317 340 0.85 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF7-218 - 590 1.4e-38 128.2 111.8 9 16 2.2e-05 0.025 15.4 3.2 1 23 345 367 345 368 0.97 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF7-218 - 590 1.4e-38 128.2 111.8 10 16 3.6e-05 0.04 14.8 0.5 1 23 373 395 373 396 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF7-218 - 590 1.4e-38 128.2 111.8 11 16 2.7e-05 0.03 15.1 0.4 1 23 401 423 401 424 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF7-218 - 590 1.4e-38 128.2 111.8 12 16 0.00015 0.17 12.8 0.4 1 23 429 451 429 452 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF7-218 - 590 1.4e-38 128.2 111.8 13 16 2e-05 0.022 15.6 0.3 1 23 457 479 457 480 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF7-218 - 590 1.4e-38 128.2 111.8 14 16 2.4e-05 0.027 15.3 0.4 1 23 485 507 485 508 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF7-218 - 590 1.4e-38 128.2 111.8 15 16 0.032 36 5.6 1.7 1 23 538 560 538 561 0.83 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF7-218 - 590 1.4e-38 128.2 111.8 16 16 1.1e-05 0.012 16.4 0.7 1 23 566 588 566 589 0.96 C2H2-type zinc finger XPA_N PF01286.18 32 ZNF7-218 - 590 3.4e-14 52.6 76.0 1 16 0.059 66 3.7 0.2 3 10 101 108 99 111 0.84 XPA protein N-terminal XPA_N PF01286.18 32 ZNF7-218 - 590 3.4e-14 52.6 76.0 2 16 0.06 67 3.7 2.5 3 13 128 138 127 140 0.89 XPA protein N-terminal XPA_N PF01286.18 32 ZNF7-218 - 590 3.4e-14 52.6 76.0 3 16 0.12 1.4e+02 2.7 0.5 3 11 155 163 153 170 0.88 XPA protein N-terminal XPA_N PF01286.18 32 ZNF7-218 - 590 3.4e-14 52.6 76.0 4 16 0.0046 5.2 7.2 0.1 3 14 183 194 181 200 0.78 XPA protein N-terminal XPA_N PF01286.18 32 ZNF7-218 - 590 3.4e-14 52.6 76.0 5 16 0.00077 0.87 9.7 0.2 3 14 211 222 209 223 0.91 XPA protein N-terminal XPA_N PF01286.18 32 ZNF7-218 - 590 3.4e-14 52.6 76.0 6 16 0.0083 9.3 6.4 0.1 4 13 240 249 238 256 0.78 XPA protein N-terminal XPA_N PF01286.18 32 ZNF7-218 - 590 3.4e-14 52.6 76.0 7 16 0.0033 3.6 7.7 0.2 4 14 268 278 266 282 0.93 XPA protein N-terminal XPA_N PF01286.18 32 ZNF7-218 - 590 3.4e-14 52.6 76.0 8 16 0.0034 3.8 7.6 0.1 3 11 318 326 316 335 0.86 XPA protein N-terminal XPA_N PF01286.18 32 ZNF7-218 - 590 3.4e-14 52.6 76.0 9 16 0.075 84 3.3 0.3 3 14 346 357 344 363 0.83 XPA protein N-terminal XPA_N PF01286.18 32 ZNF7-218 - 590 3.4e-14 52.6 76.0 10 16 0.0038 4.2 7.5 0.1 3 12 374 383 372 391 0.84 XPA protein N-terminal XPA_N PF01286.18 32 ZNF7-218 - 590 3.4e-14 52.6 76.0 11 16 0.0098 11 6.2 0.2 3 14 402 413 400 414 0.91 XPA protein N-terminal XPA_N PF01286.18 32 ZNF7-218 - 590 3.4e-14 52.6 76.0 12 16 0.0098 11 6.2 0.1 3 14 430 441 428 446 0.88 XPA protein N-terminal XPA_N PF01286.18 32 ZNF7-218 - 590 3.4e-14 52.6 76.0 13 16 0.0034 3.8 7.6 0.2 3 18 458 474 456 475 0.75 XPA protein N-terminal XPA_N PF01286.18 32 ZNF7-218 - 590 3.4e-14 52.6 76.0 14 16 0.00069 0.77 9.8 0.2 3 17 486 500 484 503 0.77 XPA protein N-terminal XPA_N PF01286.18 32 ZNF7-218 - 590 3.4e-14 52.6 76.0 15 16 0.077 87 3.3 0.5 3 11 539 547 538 549 0.90 XPA protein N-terminal XPA_N PF01286.18 32 ZNF7-218 - 590 3.4e-14 52.6 76.0 16 16 0.0097 11 6.2 0.1 3 14 567 578 565 584 0.87 XPA protein N-terminal Zn-ribbon_8 PF09723.10 40 ZNF7-218 - 590 3.8e-13 49.3 80.9 1 16 0.59 6.7e+02 0.5 5.2 7 35 101 135 84 140 0.71 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF7-218 - 590 3.8e-13 49.3 80.9 2 16 0.93 1e+03 -0.1 0.7 7 14 128 135 126 144 0.79 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF7-218 - 590 3.8e-13 49.3 80.9 3 16 0.00015 0.17 12.0 5.3 6 36 154 191 153 193 0.90 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF7-218 - 590 3.8e-13 49.3 80.9 4 16 8.5e-05 0.095 12.8 4.5 6 34 182 217 181 221 0.92 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF7-218 - 590 3.8e-13 49.3 80.9 5 16 4.6e-05 0.052 13.7 4.1 6 36 210 247 209 250 0.91 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF7-218 - 590 3.8e-13 49.3 80.9 6 16 0.00016 0.17 12.0 3.4 6 35 238 274 237 279 0.87 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF7-218 - 590 3.8e-13 49.3 80.9 7 16 0.017 19 5.5 0.3 6 17 266 277 265 292 0.75 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF7-218 - 590 3.8e-13 49.3 80.9 8 16 0.00071 0.8 9.9 1.7 6 33 317 351 316 354 0.86 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF7-218 - 590 3.8e-13 49.3 80.9 9 16 0.028 31 4.8 5.2 6 34 345 380 343 385 0.87 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF7-218 - 590 3.8e-13 49.3 80.9 10 16 0.00011 0.12 12.5 2.3 6 35 373 409 372 413 0.91 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF7-218 - 590 3.8e-13 49.3 80.9 11 16 6.6e-05 0.074 13.2 1.4 6 34 401 436 399 444 0.90 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF7-218 - 590 3.8e-13 49.3 80.9 12 16 5.8e-05 0.065 13.4 2.6 6 35 429 465 428 469 0.90 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF7-218 - 590 3.8e-13 49.3 80.9 13 16 0.00017 0.19 11.9 4.5 6 38 457 496 456 497 0.82 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF7-218 - 590 3.8e-13 49.3 80.9 14 16 0.0069 7.7 6.7 0.6 6 17 485 496 482 509 0.83 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF7-218 - 590 3.8e-13 49.3 80.9 15 16 0.00016 0.18 12.0 1.3 7 38 539 577 514 578 0.91 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF7-218 - 590 3.8e-13 49.3 80.9 16 16 0.0014 1.5 9.0 0.1 6 19 566 579 565 586 0.81 Zinc ribbon domain zf_UBZ PF18439.1 32 ZNF7-218 - 590 1e-10 41.0 73.7 1 16 0.021 24 4.7 0.1 3 15 100 112 99 118 0.79 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF7-218 - 590 1e-10 41.0 73.7 2 16 0.25 2.8e+02 1.2 1.5 5 14 129 138 127 145 0.81 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF7-218 - 590 1e-10 41.0 73.7 3 16 0.0069 7.7 6.2 0.7 3 21 154 173 152 173 0.80 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF7-218 - 590 1e-10 41.0 73.7 4 16 0.0063 7 6.3 0.1 3 21 182 201 180 201 0.84 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF7-218 - 590 1e-10 41.0 73.7 5 16 0.0076 8.5 6.1 0.2 3 15 210 222 208 229 0.77 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF7-218 - 590 1e-10 41.0 73.7 6 16 0.039 44 3.8 0.1 3 17 238 253 237 257 0.77 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF7-218 - 590 1e-10 41.0 73.7 7 16 0.00023 0.26 10.9 0.1 3 21 266 285 264 285 0.92 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF7-218 - 590 1e-10 41.0 73.7 8 16 0.013 14 5.4 0.1 3 12 317 326 315 336 0.85 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF7-218 - 590 1e-10 41.0 73.7 9 16 0.33 3.7e+02 0.8 0.5 3 12 345 354 343 363 0.83 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF7-218 - 590 1e-10 41.0 73.7 10 16 0.014 16 5.2 0.2 3 12 373 382 371 392 0.78 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF7-218 - 590 1e-10 41.0 73.7 11 16 0.004 4.5 7.0 0.1 3 15 401 413 399 420 0.82 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF7-218 - 590 1e-10 41.0 73.7 12 16 0.0041 4.6 6.9 0.1 3 20 429 447 427 448 0.84 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF7-218 - 590 1e-10 41.0 73.7 13 16 0.007 7.8 6.2 0.1 3 16 457 471 455 476 0.80 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF7-218 - 590 1e-10 41.0 73.7 14 16 0.00063 0.7 9.5 0.2 3 21 485 504 483 504 0.88 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF7-218 - 590 1e-10 41.0 73.7 15 16 0.48 5.3e+02 0.3 0.4 3 11 538 546 536 548 0.82 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF7-218 - 590 1e-10 41.0 73.7 16 16 0.0075 8.4 6.1 0.1 3 21 566 585 564 585 0.84 Ubiquitin-Binding Zinc Finger zf-C2H2_6 PF13912.6 27 ZNF7-218 - 590 2.4e-09 37.0 105.4 1 16 1.6 1.8e+03 -0.9 0.5 3 9 101 107 101 108 0.90 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF7-218 - 590 2.4e-09 37.0 105.4 2 16 0.83 9.3e+02 0.0 0.7 3 9 128 134 128 137 0.83 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF7-218 - 590 2.4e-09 37.0 105.4 3 16 0.00089 1 9.5 1.2 2 12 154 164 154 176 0.84 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF7-218 - 590 2.4e-09 37.0 105.4 4 16 0.001 1.2 9.3 0.3 2 12 182 192 182 202 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF7-218 - 590 2.4e-09 37.0 105.4 5 16 0.0027 3 7.9 0.9 2 22 210 230 210 234 0.84 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF7-218 - 590 2.4e-09 37.0 105.4 6 16 0.0026 2.9 8.0 1.1 2 24 238 260 238 263 0.91 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF7-218 - 590 2.4e-09 37.0 105.4 7 16 0.0021 2.3 8.3 0.5 2 12 266 276 266 278 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF7-218 - 590 2.4e-09 37.0 105.4 8 16 0.0006 0.67 10.0 0.1 2 12 317 327 317 329 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF7-218 - 590 2.4e-09 37.0 105.4 9 16 0.17 1.9e+02 2.2 2.2 2 24 345 367 345 370 0.74 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF7-218 - 590 2.4e-09 37.0 105.4 10 16 0.00035 0.39 10.8 0.8 2 22 373 393 373 397 0.84 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF7-218 - 590 2.4e-09 37.0 105.4 11 16 0.016 17 5.5 0.5 2 25 401 424 401 426 0.84 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF7-218 - 590 2.4e-09 37.0 105.4 12 16 0.0041 4.6 7.4 0.4 2 22 429 449 429 453 0.83 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF7-218 - 590 2.4e-09 37.0 105.4 13 16 0.0016 1.8 8.7 0.7 2 12 457 467 457 470 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF7-218 - 590 2.4e-09 37.0 105.4 14 16 9.9e-05 0.11 12.5 0.6 2 21 485 504 485 509 0.81 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF7-218 - 590 2.4e-09 37.0 105.4 15 16 6.3 7.1e+03 -2.8 0.4 2 11 538 547 537 548 0.84 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF7-218 - 590 2.4e-09 37.0 105.4 16 16 0.0078 8.7 6.5 0.7 2 25 566 589 566 590 0.85 C2H2-type zinc finger # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF7-218.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF7-218.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF7-218.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF7-218.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF7-218.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:13:28 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- KRAB PF01352.27 42 ZNF730-201 - 86 2.2e-23 81.6 0.6 1 1 1.7e-27 3e-23 81.2 0.6 2 42 13 53 12 53 0.98 KRAB box # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF730-201.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF730-201.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF730-201.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF730-201.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF730-201.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:13:28 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZNF730-202 - 503 9e-82 266.2 119.3 1 14 1.1 9.1e+02 0.6 1.6 2 24 130 154 129 156 0.66 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF730-202 - 503 9e-82 266.2 119.3 2 14 5.2e-08 4.2e-05 23.8 3.4 3 24 161 182 159 182 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF730-202 - 503 9e-82 266.2 119.3 3 14 6.1e-08 5e-05 23.5 0.7 1 25 187 211 187 212 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF730-202 - 503 9e-82 266.2 119.3 4 14 3.5e-05 0.028 14.8 2.2 10 25 223 238 217 238 0.85 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF730-202 - 503 9e-82 266.2 119.3 5 14 3.2e-10 2.6e-07 30.8 4.5 2 25 243 266 242 267 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF730-202 - 503 9e-82 266.2 119.3 6 14 3.4e-12 2.7e-09 37.0 1.0 1 25 270 294 270 295 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF730-202 - 503 9e-82 266.2 119.3 7 14 6.3e-10 5.1e-07 29.8 3.2 1 25 298 322 298 322 0.97 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF730-202 - 503 9e-82 266.2 119.3 8 14 3.5e-11 2.8e-08 33.8 1.7 2 25 327 350 326 351 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF730-202 - 503 9e-82 266.2 119.3 9 14 9.7e-09 7.9e-06 26.1 0.4 2 25 355 378 354 379 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF730-202 - 503 9e-82 266.2 119.3 10 14 7.3e-09 5.9e-06 26.5 0.7 3 25 384 406 383 407 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF730-202 - 503 9e-82 266.2 119.3 11 14 7.9e-11 6.5e-08 32.7 2.0 1 25 410 434 410 435 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF730-202 - 503 9e-82 266.2 119.3 12 14 8.3e-12 6.8e-09 35.8 0.9 2 25 439 462 438 463 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF730-202 - 503 9e-82 266.2 119.3 13 14 9.4e-09 7.7e-06 26.1 0.9 2 25 467 490 466 491 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF730-202 - 503 9e-82 266.2 119.3 14 14 6.6 5.4e+03 -1.9 2.8 1 10 494 503 494 503 0.92 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZNF730-202 - 503 3.6e-54 178.3 100.9 1 13 8.2 6.7e+03 -2.1 1.5 6 23 147 167 145 167 0.79 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF730-202 - 503 3.6e-54 178.3 100.9 2 13 6.5e-05 0.053 14.0 3.8 1 23 173 195 173 195 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF730-202 - 503 3.6e-54 178.3 100.9 3 13 1.7 1.4e+03 0.1 0.2 7 21 207 221 201 222 0.76 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF730-202 - 503 3.6e-54 178.3 100.9 4 13 2.5e-05 0.02 15.3 3.6 1 23 228 250 228 250 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF730-202 - 503 3.6e-54 178.3 100.9 5 13 5.5e-08 4.5e-05 23.7 2.1 1 23 256 278 256 278 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF730-202 - 503 3.6e-54 178.3 100.9 6 13 7e-09 5.7e-06 26.5 0.5 1 23 284 306 284 306 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF730-202 - 503 3.6e-54 178.3 100.9 7 13 3.8e-07 0.00031 21.0 1.4 1 23 312 334 312 334 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF730-202 - 503 3.6e-54 178.3 100.9 8 13 5.5e-09 4.5e-06 26.8 0.9 1 23 340 362 340 362 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF730-202 - 503 3.6e-54 178.3 100.9 9 13 5.6e-05 0.046 14.2 0.1 5 23 372 390 370 390 0.94 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF730-202 - 503 3.6e-54 178.3 100.9 10 13 1.1e-08 8.6e-06 25.9 1.9 1 23 396 418 396 418 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF730-202 - 503 3.6e-54 178.3 100.9 11 13 1.5e-08 1.3e-05 25.4 0.8 1 23 424 446 424 446 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF730-202 - 503 3.6e-54 178.3 100.9 12 13 4.9e-08 4e-05 23.8 0.3 1 23 452 474 452 474 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF730-202 - 503 3.6e-54 178.3 100.9 13 13 7.9e-08 6.5e-05 23.2 4.3 1 23 480 502 480 502 0.97 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZNF730-202 - 503 1.1e-26 91.2 87.9 1 11 0.0012 0.99 10.4 3.9 1 23 173 195 173 196 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF730-202 - 503 1.1e-26 91.2 87.9 2 11 0.0055 4.5 8.4 3.0 1 23 228 250 228 251 0.85 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF730-202 - 503 1.1e-26 91.2 87.9 3 11 0.00014 0.11 13.4 1.2 1 23 256 278 256 279 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF730-202 - 503 1.1e-26 91.2 87.9 4 11 2.7e-05 0.022 15.6 0.5 1 23 284 306 284 307 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF730-202 - 503 1.1e-26 91.2 87.9 5 11 0.00074 0.6 11.1 1.2 1 23 312 334 312 335 0.85 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF730-202 - 503 1.1e-26 91.2 87.9 6 11 1.3e-06 0.0011 19.6 0.6 1 23 340 362 340 363 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF730-202 - 503 1.1e-26 91.2 87.9 7 11 0.063 52 5.1 0.0 5 23 372 390 371 391 0.89 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF730-202 - 503 1.1e-26 91.2 87.9 8 11 1.1e-05 0.009 16.8 1.4 1 23 396 418 396 419 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF730-202 - 503 1.1e-26 91.2 87.9 9 11 1.5e-05 0.012 16.3 0.6 1 23 424 446 424 447 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF730-202 - 503 1.1e-26 91.2 87.9 10 11 2.7e-05 0.022 15.6 0.3 1 23 452 474 452 475 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF730-202 - 503 1.1e-26 91.2 87.9 11 11 8.8e-05 0.071 14.0 3.1 1 23 480 502 480 503 0.92 C2H2-type zinc finger KRAB PF01352.27 42 ZNF730-202 - 503 3.7e-22 77.7 0.6 1 1 7.8e-25 6.4e-22 76.9 0.6 2 42 4 44 3 44 0.98 KRAB box zf-C2H2_6 PF13912.6 27 ZNF730-202 - 503 5.8e-17 61.3 96.4 1 12 5.3 4.3e+03 -2.1 0.8 9 25 152 168 145 170 0.71 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF730-202 - 503 5.8e-17 61.3 96.4 2 12 0.13 1.1e+02 3.0 7.4 2 22 173 193 173 196 0.76 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF730-202 - 503 5.8e-17 61.3 96.4 3 12 0.0012 0.98 9.5 2.6 2 22 228 248 228 252 0.80 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF730-202 - 503 5.8e-17 61.3 96.4 4 12 0.00044 0.36 10.9 1.5 2 24 256 278 256 281 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF730-202 - 503 5.8e-17 61.3 96.4 5 12 1.2e-05 0.0096 15.9 1.9 2 26 284 308 284 309 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF730-202 - 503 5.8e-17 61.3 96.4 6 12 0.012 9.7 6.3 1.7 2 24 312 334 312 337 0.89 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF730-202 - 503 5.8e-17 61.3 96.4 7 12 4.1e-05 0.033 14.2 1.0 2 24 340 362 340 364 0.97 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF730-202 - 503 5.8e-17 61.3 96.4 8 12 0.58 4.7e+02 1.0 0.1 5 12 371 378 371 390 0.80 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF730-202 - 503 5.8e-17 61.3 96.4 9 12 5.1e-06 0.0042 17.1 1.6 2 24 396 418 395 421 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF730-202 - 503 5.8e-17 61.3 96.4 10 12 0.00092 0.75 9.9 0.7 2 24 424 446 424 449 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF730-202 - 503 5.8e-17 61.3 96.4 11 12 4.5e-05 0.037 14.1 0.4 2 24 452 474 452 477 0.92 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF730-202 - 503 5.8e-17 61.3 96.4 12 12 1.7e-05 0.014 15.4 2.2 2 22 480 500 479 502 0.90 C2H2-type zinc finger XPA_N PF01286.18 32 ZNF730-202 - 503 4.2e-14 52.3 48.3 1 12 0.03 25 5.0 0.9 3 12 174 183 172 189 0.91 XPA protein N-terminal XPA_N PF01286.18 32 ZNF730-202 - 503 4.2e-14 52.3 48.3 2 12 3.6 2.9e+03 -1.6 0.1 3 14 202 213 201 214 0.88 XPA protein N-terminal XPA_N PF01286.18 32 ZNF730-202 - 503 4.2e-14 52.3 48.3 3 12 0.01 8.5 6.5 0.1 3 11 229 237 227 239 0.90 XPA protein N-terminal XPA_N PF01286.18 32 ZNF730-202 - 503 4.2e-14 52.3 48.3 4 12 0.019 15 5.7 0.1 3 14 257 268 255 274 0.87 XPA protein N-terminal XPA_N PF01286.18 32 ZNF730-202 - 503 4.2e-14 52.3 48.3 5 12 0.00065 0.53 10.4 0.3 3 14 285 296 283 301 0.91 XPA protein N-terminal XPA_N PF01286.18 32 ZNF730-202 - 503 4.2e-14 52.3 48.3 6 12 0.0045 3.7 7.7 0.1 3 14 313 324 311 330 0.86 XPA protein N-terminal XPA_N PF01286.18 32 ZNF730-202 - 503 4.2e-14 52.3 48.3 7 12 0.0011 0.9 9.6 0.1 3 14 341 352 339 357 0.89 XPA protein N-terminal XPA_N PF01286.18 32 ZNF730-202 - 503 4.2e-14 52.3 48.3 8 12 0.18 1.4e+02 2.6 0.0 6 14 372 380 371 385 0.88 XPA protein N-terminal XPA_N PF01286.18 32 ZNF730-202 - 503 4.2e-14 52.3 48.3 9 12 0.0041 3.4 7.8 0.1 3 12 397 406 396 414 0.87 XPA protein N-terminal XPA_N PF01286.18 32 ZNF730-202 - 503 4.2e-14 52.3 48.3 10 12 0.0015 1.2 9.2 0.1 3 14 425 436 423 442 0.86 XPA protein N-terminal XPA_N PF01286.18 32 ZNF730-202 - 503 4.2e-14 52.3 48.3 11 12 0.0011 0.87 9.7 0.1 3 14 453 464 451 471 0.85 XPA protein N-terminal XPA_N PF01286.18 32 ZNF730-202 - 503 4.2e-14 52.3 48.3 12 12 0.014 11 6.1 0.3 3 11 481 489 480 492 0.91 XPA protein N-terminal zf_UBZ PF18439.1 32 ZNF730-202 - 503 1.9e-10 40.2 50.5 1 13 5.8 4.7e+03 -2.7 0.1 24 29 80 85 80 85 0.95 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF730-202 - 503 1.9e-10 40.2 50.5 2 13 0.059 48 3.7 0.7 3 12 173 182 171 192 0.80 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF730-202 - 503 1.9e-10 40.2 50.5 3 13 8.8 7.2e+03 -3.3 0.0 2 8 200 206 199 214 0.70 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF730-202 - 503 1.9e-10 40.2 50.5 4 13 0.022 18 5.0 0.1 3 12 228 237 226 246 0.88 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF730-202 - 503 1.9e-10 40.2 50.5 5 13 0.00095 0.78 9.4 0.1 3 20 256 274 254 275 0.87 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF730-202 - 503 1.9e-10 40.2 50.5 6 13 0.00012 0.096 12.3 0.2 3 20 284 302 282 303 0.93 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF730-202 - 503 1.9e-10 40.2 50.5 7 13 0.006 4.9 6.8 0.1 3 13 312 322 310 331 0.80 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF730-202 - 503 1.9e-10 40.2 50.5 8 13 0.0042 3.4 7.3 0.1 3 15 340 352 338 359 0.79 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF730-202 - 503 1.9e-10 40.2 50.5 9 13 5.4 4.4e+03 -2.6 0.0 7 14 372 379 371 383 0.79 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF730-202 - 503 1.9e-10 40.2 50.5 10 13 0.003 2.5 7.8 0.2 3 14 396 407 394 415 0.79 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF730-202 - 503 1.9e-10 40.2 50.5 11 13 0.0039 3.2 7.4 0.1 3 20 424 442 422 443 0.85 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF730-202 - 503 1.9e-10 40.2 50.5 12 13 0.0029 2.3 7.9 0.2 3 20 452 470 450 471 0.83 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF730-202 - 503 1.9e-10 40.2 50.5 13 13 0.027 22 4.7 0.1 3 12 480 489 478 496 0.88 Ubiquitin-Binding Zinc Finger Zn-ribbon_8 PF09723.10 40 ZNF730-202 - 503 2.6e-10 40.2 71.2 1 13 7.3 5.9e+03 -2.5 0.1 10 22 146 158 145 164 0.71 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF730-202 - 503 2.6e-10 40.2 71.2 2 13 0.016 13 6.0 0.3 6 20 173 187 172 195 0.79 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF730-202 - 503 2.6e-10 40.2 71.2 3 13 0.054 44 4.3 5.6 6 34 201 235 200 238 0.62 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF730-202 - 503 2.6e-10 40.2 71.2 4 13 0.00041 0.33 11.1 5.5 6 34 228 263 226 263 0.83 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF730-202 - 503 2.6e-10 40.2 71.2 5 13 0.019 16 5.7 0.9 6 16 256 266 254 276 0.84 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF730-202 - 503 2.6e-10 40.2 71.2 6 13 9.2e-05 0.075 13.2 6.4 6 35 284 320 283 322 0.88 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF730-202 - 503 2.6e-10 40.2 71.2 7 13 4.3e-05 0.035 14.2 5.1 6 38 312 351 311 353 0.89 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF730-202 - 503 2.6e-10 40.2 71.2 8 13 0.0018 1.4 9.1 0.5 6 19 340 353 339 362 0.81 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF730-202 - 503 2.6e-10 40.2 71.2 9 13 2.3 1.9e+03 -0.9 0.0 9 17 371 379 367 389 0.75 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF730-202 - 503 2.6e-10 40.2 71.2 10 13 0.00063 0.51 10.5 5.4 6 33 396 430 395 430 0.78 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF730-202 - 503 2.6e-10 40.2 71.2 11 13 0.00025 0.2 11.8 6.9 6 38 424 463 423 464 0.84 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF730-202 - 503 2.6e-10 40.2 71.2 12 13 4.8e-05 0.039 14.1 6.1 6 38 452 491 451 492 0.86 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF730-202 - 503 2.6e-10 40.2 71.2 13 13 0.0013 1 9.5 0.5 6 20 480 494 478 500 0.84 Zinc ribbon domain zf-C2H2_jaz PF12171.8 27 ZNF730-202 - 503 5.4e-08 32.9 64.7 1 13 0.17 1.4e+02 2.9 0.6 9 26 115 133 114 134 0.89 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF730-202 - 503 5.4e-08 32.9 64.7 2 13 8 6.5e+03 -2.4 0.2 7 12 147 152 146 152 0.85 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF730-202 - 503 5.4e-08 32.9 64.7 3 13 0.33 2.7e+02 2.0 0.6 2 11 173 182 172 182 0.86 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF730-202 - 503 5.4e-08 32.9 64.7 4 13 0.13 1e+02 3.3 0.8 2 12 228 238 227 247 0.91 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF730-202 - 503 5.4e-08 32.9 64.7 5 13 0.22 1.8e+02 2.6 0.5 4 22 258 276 255 276 0.89 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF730-202 - 503 5.4e-08 32.9 64.7 6 13 0.00071 0.58 10.5 0.4 2 22 284 304 283 304 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF730-202 - 503 5.4e-08 32.9 64.7 7 13 0.068 56 4.2 0.2 2 22 312 332 311 332 0.91 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF730-202 - 503 5.4e-08 32.9 64.7 8 13 0.00012 0.095 13.0 0.3 2 22 340 360 339 362 0.90 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF730-202 - 503 5.4e-08 32.9 64.7 9 13 2.4 1.9e+03 -0.7 0.1 6 20 372 386 371 387 0.85 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF730-202 - 503 5.4e-08 32.9 64.7 10 13 0.002 1.6 9.1 0.3 2 22 396 416 396 416 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF730-202 - 503 5.4e-08 32.9 64.7 11 13 0.0011 0.89 9.9 0.0 2 22 424 444 423 444 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF730-202 - 503 5.4e-08 32.9 64.7 12 13 8e-05 0.065 13.5 0.0 2 21 452 471 451 472 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF730-202 - 503 5.4e-08 32.9 64.7 13 13 0.11 89 3.6 0.5 2 13 480 491 479 500 0.77 Zinc-finger double-stranded RNA-binding # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF730-202.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF730-202.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF730-202.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF730-202.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF730-202.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:13:28 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF730-203.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF730-203.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF730-203.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF730-203.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF730-203.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:13:29 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZNF736-201 - 427 2.8e-59 195.0 103.3 1 11 1.5 2.1e+03 -0.5 1.0 16 24 146 154 126 154 0.86 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF736-201 - 427 2.8e-59 195.0 103.3 2 11 1.5 2.1e+03 -0.6 4.8 12 22 170 180 160 182 0.73 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF736-201 - 427 2.8e-59 195.0 103.3 3 11 6.1e-08 8.5e-05 22.8 5.4 2 26 188 212 187 212 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF736-201 - 427 2.8e-59 195.0 103.3 4 11 2e-11 2.8e-08 33.8 3.3 1 25 215 239 215 240 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF736-201 - 427 2.8e-59 195.0 103.3 5 11 5.2e-11 7.1e-08 32.5 3.8 2 26 244 268 243 268 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF736-201 - 427 2.8e-59 195.0 103.3 6 11 2.4e-11 3.4e-08 33.6 1.3 1 24 271 294 271 295 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF736-201 - 427 2.8e-59 195.0 103.3 7 11 1.3e-10 1.8e-07 31.3 0.4 1 25 299 323 299 323 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF736-201 - 427 2.8e-59 195.0 103.3 8 11 2.7e-11 3.8e-08 33.4 0.5 1 26 327 352 327 352 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF736-201 - 427 2.8e-59 195.0 103.3 9 11 5.7e-08 7.9e-05 22.9 5.2 4 26 358 380 356 380 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF736-201 - 427 2.8e-59 195.0 103.3 10 11 3.9e-11 5.4e-08 32.9 0.5 1 24 383 406 383 407 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF736-201 - 427 2.8e-59 195.0 103.3 11 11 0.0017 2.3 8.8 5.2 1 17 411 427 411 427 0.95 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZNF736-201 - 427 7.7e-33 111.1 87.9 1 10 0.29 4e+02 1.8 3.3 2 10 146 154 145 163 0.87 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF736-201 - 427 7.7e-33 111.1 87.9 2 10 0.00083 1.1 9.8 5.3 1 23 173 195 173 195 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF736-201 - 427 7.7e-33 111.1 87.9 3 10 9.8e-09 1.4e-05 25.3 1.1 1 23 201 223 201 223 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF736-201 - 427 7.7e-33 111.1 87.9 4 10 1.1e-06 0.0015 18.9 3.7 1 23 229 251 229 251 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF736-201 - 427 7.7e-33 111.1 87.9 5 10 2.3e-06 0.0031 17.9 2.7 1 23 257 279 257 279 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF736-201 - 427 7.7e-33 111.1 87.9 6 10 6.3e-05 0.087 13.3 0.3 1 23 285 307 285 307 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF736-201 - 427 7.7e-33 111.1 87.9 7 10 1.2e-06 0.0017 18.7 0.6 1 23 313 335 313 335 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF736-201 - 427 7.7e-33 111.1 87.9 8 10 1e-08 1.4e-05 25.3 0.6 1 23 341 363 341 363 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF736-201 - 427 7.7e-33 111.1 87.9 9 10 1.7e-05 0.024 15.1 4.8 1 23 369 391 369 391 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF736-201 - 427 7.7e-33 111.1 87.9 10 10 1.8e-05 0.025 15.0 1.2 1 23 397 419 397 419 0.99 Zinc finger, C2H2 type KRAB PF01352.27 42 ZNF736-201 - 427 3.5e-25 87.4 0.2 1 1 4.7e-28 6.5e-25 86.5 0.2 2 42 4 44 3 44 0.98 KRAB box zf-C2H2_4 PF13894.6 24 ZNF736-201 - 427 1.3e-19 69.2 87.1 1 10 0.41 5.7e+02 1.8 3.1 2 19 146 163 145 165 0.70 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF736-201 - 427 1.3e-19 69.2 87.1 2 10 0.011 15 6.7 4.2 1 23 173 195 173 196 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF736-201 - 427 1.3e-19 69.2 87.1 3 10 4.9e-05 0.068 14.1 1.2 1 23 201 223 201 224 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF736-201 - 427 1.3e-19 69.2 87.1 4 10 1.2e-06 0.0016 19.1 2.9 1 23 229 251 229 252 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF736-201 - 427 1.3e-19 69.2 87.1 5 10 3.6e-06 0.0049 17.6 2.3 1 23 257 279 257 280 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF736-201 - 427 1.3e-19 69.2 87.1 6 10 0.0044 6.1 8.0 0.4 1 23 285 307 285 308 0.85 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF736-201 - 427 1.3e-19 69.2 87.1 7 10 0.00068 0.94 10.5 0.8 1 23 313 335 313 336 0.86 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF736-201 - 427 1.3e-19 69.2 87.1 8 10 3.6e-06 0.0049 17.6 0.5 1 23 341 363 341 364 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF736-201 - 427 1.3e-19 69.2 87.1 9 10 4.9e-06 0.0067 17.2 3.8 1 23 369 391 369 392 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF736-201 - 427 1.3e-19 69.2 87.1 10 10 0.0031 4.3 8.5 1.4 1 23 397 419 397 420 0.88 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF736-201 - 427 1.6e-10 40.7 89.3 1 10 0.34 4.7e+02 1.0 0.4 4 12 147 155 146 155 0.89 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF736-201 - 427 1.6e-10 40.7 89.3 2 10 1.2 1.6e+03 -0.8 4.5 2 9 173 180 172 181 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF736-201 - 427 1.6e-10 40.7 89.3 3 10 7.7e-07 0.0011 18.9 3.9 2 24 201 223 200 226 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF736-201 - 427 1.6e-10 40.7 89.3 4 10 0.057 78 3.4 4.4 2 24 229 251 229 253 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF736-201 - 427 1.6e-10 40.7 89.3 5 10 9.5e-05 0.13 12.3 2.6 2 24 257 279 257 282 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF736-201 - 427 1.6e-10 40.7 89.3 6 10 0.00031 0.43 10.6 0.4 2 24 285 307 285 308 0.92 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF736-201 - 427 1.6e-10 40.7 89.3 7 10 5.8e-06 0.0079 16.2 1.0 2 24 313 335 313 338 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF736-201 - 427 1.6e-10 40.7 89.3 8 10 6.8e-05 0.094 12.7 0.4 2 26 341 365 341 366 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF736-201 - 427 1.6e-10 40.7 89.3 9 10 3.7e-05 0.051 13.6 3.4 2 24 369 391 369 394 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF736-201 - 427 1.6e-10 40.7 89.3 10 10 1 1.4e+03 -0.6 4.7 2 10 397 405 397 419 0.73 C2H2-type zinc finger # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF736-201.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF736-201.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF736-201.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF736-201.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF736-201.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:13:29 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZNF736-202 - 427 2.8e-59 195.0 103.3 1 11 1.5 2.1e+03 -0.5 1.0 16 24 146 154 126 154 0.86 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF736-202 - 427 2.8e-59 195.0 103.3 2 11 1.5 2.1e+03 -0.6 4.8 12 22 170 180 160 182 0.73 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF736-202 - 427 2.8e-59 195.0 103.3 3 11 6.1e-08 8.5e-05 22.8 5.4 2 26 188 212 187 212 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF736-202 - 427 2.8e-59 195.0 103.3 4 11 2e-11 2.8e-08 33.8 3.3 1 25 215 239 215 240 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF736-202 - 427 2.8e-59 195.0 103.3 5 11 5.2e-11 7.1e-08 32.5 3.8 2 26 244 268 243 268 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF736-202 - 427 2.8e-59 195.0 103.3 6 11 2.4e-11 3.4e-08 33.6 1.3 1 24 271 294 271 295 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF736-202 - 427 2.8e-59 195.0 103.3 7 11 1.3e-10 1.8e-07 31.3 0.4 1 25 299 323 299 323 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF736-202 - 427 2.8e-59 195.0 103.3 8 11 2.7e-11 3.8e-08 33.4 0.5 1 26 327 352 327 352 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF736-202 - 427 2.8e-59 195.0 103.3 9 11 5.7e-08 7.9e-05 22.9 5.2 4 26 358 380 356 380 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF736-202 - 427 2.8e-59 195.0 103.3 10 11 3.9e-11 5.4e-08 32.9 0.5 1 24 383 406 383 407 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF736-202 - 427 2.8e-59 195.0 103.3 11 11 0.0017 2.3 8.8 5.2 1 17 411 427 411 427 0.95 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZNF736-202 - 427 7.7e-33 111.1 87.9 1 10 0.29 4e+02 1.8 3.3 2 10 146 154 145 163 0.87 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF736-202 - 427 7.7e-33 111.1 87.9 2 10 0.00083 1.1 9.8 5.3 1 23 173 195 173 195 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF736-202 - 427 7.7e-33 111.1 87.9 3 10 9.8e-09 1.4e-05 25.3 1.1 1 23 201 223 201 223 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF736-202 - 427 7.7e-33 111.1 87.9 4 10 1.1e-06 0.0015 18.9 3.7 1 23 229 251 229 251 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF736-202 - 427 7.7e-33 111.1 87.9 5 10 2.3e-06 0.0031 17.9 2.7 1 23 257 279 257 279 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF736-202 - 427 7.7e-33 111.1 87.9 6 10 6.3e-05 0.087 13.3 0.3 1 23 285 307 285 307 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF736-202 - 427 7.7e-33 111.1 87.9 7 10 1.2e-06 0.0017 18.7 0.6 1 23 313 335 313 335 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF736-202 - 427 7.7e-33 111.1 87.9 8 10 1e-08 1.4e-05 25.3 0.6 1 23 341 363 341 363 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF736-202 - 427 7.7e-33 111.1 87.9 9 10 1.7e-05 0.024 15.1 4.8 1 23 369 391 369 391 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF736-202 - 427 7.7e-33 111.1 87.9 10 10 1.8e-05 0.025 15.0 1.2 1 23 397 419 397 419 0.99 Zinc finger, C2H2 type KRAB PF01352.27 42 ZNF736-202 - 427 3.5e-25 87.4 0.2 1 1 4.7e-28 6.5e-25 86.5 0.2 2 42 4 44 3 44 0.98 KRAB box zf-C2H2_4 PF13894.6 24 ZNF736-202 - 427 1.3e-19 69.2 87.1 1 10 0.41 5.7e+02 1.8 3.1 2 19 146 163 145 165 0.70 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF736-202 - 427 1.3e-19 69.2 87.1 2 10 0.011 15 6.7 4.2 1 23 173 195 173 196 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF736-202 - 427 1.3e-19 69.2 87.1 3 10 4.9e-05 0.068 14.1 1.2 1 23 201 223 201 224 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF736-202 - 427 1.3e-19 69.2 87.1 4 10 1.2e-06 0.0016 19.1 2.9 1 23 229 251 229 252 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF736-202 - 427 1.3e-19 69.2 87.1 5 10 3.6e-06 0.0049 17.6 2.3 1 23 257 279 257 280 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF736-202 - 427 1.3e-19 69.2 87.1 6 10 0.0044 6.1 8.0 0.4 1 23 285 307 285 308 0.85 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF736-202 - 427 1.3e-19 69.2 87.1 7 10 0.00068 0.94 10.5 0.8 1 23 313 335 313 336 0.86 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF736-202 - 427 1.3e-19 69.2 87.1 8 10 3.6e-06 0.0049 17.6 0.5 1 23 341 363 341 364 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF736-202 - 427 1.3e-19 69.2 87.1 9 10 4.9e-06 0.0067 17.2 3.8 1 23 369 391 369 392 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF736-202 - 427 1.3e-19 69.2 87.1 10 10 0.0031 4.3 8.5 1.4 1 23 397 419 397 420 0.88 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF736-202 - 427 1.6e-10 40.7 89.3 1 10 0.34 4.7e+02 1.0 0.4 4 12 147 155 146 155 0.89 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF736-202 - 427 1.6e-10 40.7 89.3 2 10 1.2 1.6e+03 -0.8 4.5 2 9 173 180 172 181 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF736-202 - 427 1.6e-10 40.7 89.3 3 10 7.7e-07 0.0011 18.9 3.9 2 24 201 223 200 226 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF736-202 - 427 1.6e-10 40.7 89.3 4 10 0.057 78 3.4 4.4 2 24 229 251 229 253 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF736-202 - 427 1.6e-10 40.7 89.3 5 10 9.5e-05 0.13 12.3 2.6 2 24 257 279 257 282 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF736-202 - 427 1.6e-10 40.7 89.3 6 10 0.00031 0.43 10.6 0.4 2 24 285 307 285 308 0.92 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF736-202 - 427 1.6e-10 40.7 89.3 7 10 5.8e-06 0.0079 16.2 1.0 2 24 313 335 313 338 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF736-202 - 427 1.6e-10 40.7 89.3 8 10 6.8e-05 0.094 12.7 0.4 2 26 341 365 341 366 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF736-202 - 427 1.6e-10 40.7 89.3 9 10 3.7e-05 0.051 13.6 3.4 2 24 369 391 369 394 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF736-202 - 427 1.6e-10 40.7 89.3 10 10 1 1.4e+03 -0.6 4.7 2 10 397 405 397 419 0.73 C2H2-type zinc finger # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF736-202.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF736-202.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF736-202.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF736-202.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF736-202.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:13:29 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF736-203.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF736-203.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF736-203.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF736-203.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF736-203.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:13:30 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF736-204.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF736-204.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF736-204.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF736-204.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF736-204.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:13:31 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- KRAB PF01352.27 42 ZNF736-205 - 79 2.3e-26 91.2 0.2 1 1 1.7e-30 3.1e-26 90.8 0.2 2 42 4 44 3 44 0.98 KRAB box # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF736-205.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF736-205.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF736-205.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF736-205.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF736-205.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:13:31 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF736-206.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF736-206.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF736-206.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF736-206.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF736-206.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:13:31 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF736-207.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF736-207.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF736-207.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF736-207.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF736-207.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:13:32 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF736-208.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF736-208.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF736-208.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF736-208.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF736-208.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:13:32 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZNF740-201 - 193 7.7e-15 54.6 20.2 1 3 0.19 2.9e+02 2.2 0.2 12 24 98 110 90 112 0.82 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF740-201 - 193 7.7e-15 54.6 20.2 2 3 1.3e-11 2e-08 34.3 0.2 1 24 115 138 115 140 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF740-201 - 193 7.7e-15 54.6 20.2 3 3 3.3e-10 5e-07 29.9 3.6 1 25 143 167 143 168 0.95 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZNF740-201 - 193 8.1e-11 41.8 28.4 1 4 8.6e-07 0.0013 19.1 3.3 1 23 101 123 101 123 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF740-201 - 193 8.1e-11 41.8 28.4 2 4 9.9e-09 1.5e-05 25.2 2.1 1 23 129 151 129 151 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF740-201 - 193 8.1e-11 41.8 28.4 3 4 3e-05 0.045 14.2 1.9 1 21 157 177 157 178 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF740-201 - 193 8.1e-11 41.8 28.4 4 4 8.7 1.3e+04 -3.0 0.3 3 7 179 183 179 188 0.77 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZNF740-201 - 193 1.3e-09 38.0 24.3 1 4 9.4e-07 0.0014 19.3 2.9 1 23 101 123 101 124 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF740-201 - 193 1.3e-09 38.0 24.3 2 4 3.9e-06 0.0059 17.3 1.5 1 23 129 151 129 152 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF740-201 - 193 1.3e-09 38.0 24.3 3 4 3.2e-05 0.048 14.5 2.4 1 22 157 178 157 180 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF740-201 - 193 1.3e-09 38.0 24.3 4 4 5.5 8.3e+03 -1.8 0.1 3 10 179 184 177 190 0.65 C2H2-type zinc finger # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF740-201.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF740-201.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF740-201.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF740-201.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF740-201.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:13:32 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF740-202.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF740-202.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF740-202.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF740-202.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF740-202.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:13:33 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF740-203.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF740-203.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF740-203.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF740-203.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF740-203.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:13:33 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF740-204.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF740-204.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF740-204.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF740-204.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF740-204.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:13:33 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZNF74-201 - 573 1.7e-82 268.5 84.0 1 14 2.3 3.2e+03 -1.2 0.1 12 19 107 114 105 114 0.88 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF74-201 - 573 1.7e-82 268.5 84.0 2 14 0.011 16 6.1 0.0 11 25 173 187 167 188 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF74-201 - 573 1.7e-82 268.5 84.0 3 14 2.6e-08 3.5e-05 24.0 0.5 2 25 192 215 191 215 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF74-201 - 573 1.7e-82 268.5 84.0 4 14 1.2e-09 1.7e-06 28.2 1.1 1 25 219 243 219 244 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF74-201 - 573 1.7e-82 268.5 84.0 5 14 2.1e-11 2.9e-08 33.8 0.9 1 25 247 271 247 272 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF74-201 - 573 1.7e-82 268.5 84.0 6 14 2.3e-11 3.2e-08 33.6 0.2 2 25 276 299 276 300 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF74-201 - 573 1.7e-82 268.5 84.0 7 14 9.8e-11 1.3e-07 31.7 4.7 1 25 303 327 303 328 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF74-201 - 573 1.7e-82 268.5 84.0 8 14 2.3e-09 3.1e-06 27.3 0.3 2 26 332 356 331 356 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF74-201 - 573 1.7e-82 268.5 84.0 9 14 6.9e-10 9.6e-07 29.0 1.8 2 25 360 383 359 384 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF74-201 - 573 1.7e-82 268.5 84.0 10 14 7.8e-10 1.1e-06 28.8 0.4 4 26 390 412 387 412 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF74-201 - 573 1.7e-82 268.5 84.0 11 14 4.2e-08 5.8e-05 23.3 0.7 4 25 418 439 415 440 0.90 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF74-201 - 573 1.7e-82 268.5 84.0 12 14 6.6e-11 9.1e-08 32.2 0.1 2 25 444 467 443 468 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF74-201 - 573 1.7e-82 268.5 84.0 13 14 1.5e-07 0.00021 21.6 0.7 2 24 472 494 472 495 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF74-201 - 573 1.7e-82 268.5 84.0 14 14 0.42 5.7e+02 1.2 0.2 1 14 499 512 499 515 0.84 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZNF74-201 - 573 4.2e-48 159.2 106.6 1 12 8.7e-09 1.2e-05 25.5 0.3 1 23 177 199 177 199 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF74-201 - 573 4.2e-48 159.2 106.6 2 12 1.2e-06 0.0017 18.7 0.3 1 23 205 227 205 227 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF74-201 - 573 4.2e-48 159.2 106.6 3 12 7.3e-06 0.01 16.3 3.0 1 23 233 255 233 255 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF74-201 - 573 4.2e-48 159.2 106.6 4 12 0.00011 0.16 12.5 2.0 1 23 261 283 261 283 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF74-201 - 573 4.2e-48 159.2 106.6 5 12 1.8e-08 2.4e-05 24.5 4.1 1 23 289 311 289 311 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF74-201 - 573 4.2e-48 159.2 106.6 6 12 4.6e-05 0.064 13.7 2.8 1 23 317 339 317 339 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF74-201 - 573 4.2e-48 159.2 106.6 7 12 6e-08 8.3e-05 22.8 2.0 1 23 345 367 345 367 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF74-201 - 573 4.2e-48 159.2 106.6 8 12 8e-05 0.11 13.0 2.6 1 23 373 395 373 395 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF74-201 - 573 4.2e-48 159.2 106.6 9 12 3.8e-08 5.3e-05 23.5 1.0 1 23 401 423 401 423 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF74-201 - 573 4.2e-48 159.2 106.6 10 12 0.00015 0.21 12.1 3.0 1 23 429 451 429 451 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF74-201 - 573 4.2e-48 159.2 106.6 11 12 2.1e-07 0.00029 21.1 4.0 1 23 457 479 457 479 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF74-201 - 573 4.2e-48 159.2 106.6 12 12 1.5e-06 0.0021 18.4 1.7 1 23 485 507 485 507 0.98 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZNF74-201 - 573 3.1e-26 89.8 106.7 1 12 0.00016 0.21 12.5 0.6 1 23 177 199 177 200 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF74-201 - 573 3.1e-26 89.8 106.7 2 12 0.00016 0.22 12.5 0.3 1 23 205 227 205 228 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF74-201 - 573 3.1e-26 89.8 106.7 3 12 7.3e-05 0.1 13.5 3.1 1 23 233 255 233 256 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF74-201 - 573 3.1e-26 89.8 106.7 4 12 6.6e-05 0.091 13.6 2.6 1 23 261 283 261 284 0.89 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF74-201 - 573 3.1e-26 89.8 106.7 5 12 0.0001 0.14 13.0 2.4 1 23 289 311 289 312 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF74-201 - 573 3.1e-26 89.8 106.7 6 12 3.9e-05 0.053 14.4 2.9 1 23 317 339 317 340 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF74-201 - 573 3.1e-26 89.8 106.7 7 12 2.9e-05 0.039 14.8 1.4 1 23 345 367 345 368 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF74-201 - 573 3.1e-26 89.8 106.7 8 12 7.5e-05 0.1 13.5 2.6 1 23 373 395 373 396 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF74-201 - 573 3.1e-26 89.8 106.7 9 12 1.4e-05 0.019 15.7 1.0 1 23 401 423 401 424 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF74-201 - 573 3.1e-26 89.8 106.7 10 12 0.024 33 5.7 3.5 3 23 431 451 429 452 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF74-201 - 573 3.1e-26 89.8 106.7 11 12 3e-05 0.041 14.7 3.7 1 23 457 479 457 480 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF74-201 - 573 3.1e-26 89.8 106.7 12 12 0.0013 1.8 9.6 2.0 1 23 485 507 485 508 0.86 C2H2-type zinc finger Zn-ribbon_8 PF09723.10 40 ZNF74-201 - 573 5.8e-08 32.7 61.7 1 12 0.01 14 5.9 0.1 5 17 176 188 176 197 0.82 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF74-201 - 573 5.8e-08 32.7 61.7 2 12 4.3e-05 0.059 13.5 1.6 6 34 205 240 204 243 0.91 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF74-201 - 573 5.8e-08 32.7 61.7 3 12 0.017 23 5.2 5.7 6 34 233 268 232 272 0.90 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF74-201 - 573 5.8e-08 32.7 61.7 4 12 0.058 79 3.5 0.6 6 16 261 271 260 281 0.81 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF74-201 - 573 5.8e-08 32.7 61.7 5 12 5.4e-05 0.074 13.2 2.6 6 34 289 324 288 327 0.89 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF74-201 - 573 5.8e-08 32.7 61.7 6 12 0.0069 9.5 6.4 5.0 6 34 317 352 316 357 0.84 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF74-201 - 573 5.8e-08 32.7 61.7 7 12 0.0095 13 6.0 3.3 6 34 345 380 344 381 0.84 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF74-201 - 573 5.8e-08 32.7 61.7 8 12 0.00035 0.48 10.6 3.6 6 34 373 408 372 411 0.88 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF74-201 - 573 5.8e-08 32.7 61.7 9 12 0.00069 0.94 9.6 1.1 6 32 401 434 400 439 0.88 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF74-201 - 573 5.8e-08 32.7 61.7 10 12 0.0052 7.1 6.8 3.7 6 35 429 465 428 470 0.83 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF74-201 - 573 5.8e-08 32.7 61.7 11 12 0.00088 1.2 9.3 6.5 6 34 457 492 456 495 0.91 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF74-201 - 573 5.8e-08 32.7 61.7 12 12 0.015 20 5.4 0.7 6 16 485 495 483 509 0.81 Zinc ribbon domain zf-C2H2_11 PF16622.5 29 ZNF74-201 - 573 1.8e-07 30.8 77.7 1 12 0.069 95 2.9 0.4 7 24 179 196 177 198 0.84 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF74-201 - 573 1.8e-07 30.8 77.7 2 12 0.00016 0.22 11.3 0.0 4 26 204 226 202 227 0.93 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF74-201 - 573 1.8e-07 30.8 77.7 3 12 0.0023 3.2 7.6 3.5 7 26 235 254 233 255 0.95 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF74-201 - 573 1.8e-07 30.8 77.7 4 12 0.19 2.6e+02 1.5 3.2 5 26 261 282 259 283 0.92 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF74-201 - 573 1.8e-07 30.8 77.7 5 12 0.0012 1.6 8.6 0.5 5 26 289 310 286 311 0.94 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF74-201 - 573 1.8e-07 30.8 77.7 6 12 0.00035 0.49 10.2 1.1 5 25 317 337 314 339 0.89 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF74-201 - 573 1.8e-07 30.8 77.7 7 12 0.69 9.6e+02 -0.3 0.3 5 21 345 361 344 365 0.79 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF74-201 - 573 1.8e-07 30.8 77.7 8 12 0.0032 4.4 7.1 0.7 5 26 373 394 370 395 0.93 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF74-201 - 573 1.8e-07 30.8 77.7 9 12 3.8e-05 0.052 13.3 0.2 5 26 401 422 398 423 0.93 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF74-201 - 573 1.8e-07 30.8 77.7 10 12 0.49 6.7e+02 0.2 2.2 7 26 431 450 428 451 0.90 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF74-201 - 573 1.8e-07 30.8 77.7 11 12 0.0005 0.69 9.7 1.5 5 26 457 478 454 479 0.90 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF74-201 - 573 1.8e-07 30.8 77.7 12 12 0.033 46 3.9 0.1 3 14 483 494 482 506 0.74 zinc-finger C2H2-type # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF74-201.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF74-201.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF74-201.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF74-201.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF74-201.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:13:34 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZNF74-202 - 644 1.8e-81 265.2 84.8 1 14 2.7 4.1e+03 -1.5 0.1 12 19 178 185 177 185 0.88 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF74-202 - 644 1.8e-81 265.2 84.8 2 14 0.012 18 6.0 0.0 11 25 244 258 238 259 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF74-202 - 644 1.8e-81 265.2 84.8 3 14 2.7e-08 4.1e-05 23.8 0.5 2 25 263 286 262 286 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF74-202 - 644 1.8e-81 265.2 84.8 4 14 1.3e-09 1.9e-06 28.0 1.1 1 25 290 314 290 315 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF74-202 - 644 1.8e-81 265.2 84.8 5 14 2.2e-11 3.4e-08 33.6 0.9 1 25 318 342 318 343 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF74-202 - 644 1.8e-81 265.2 84.8 6 14 2.5e-11 3.7e-08 33.4 0.2 2 25 347 370 347 371 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF74-202 - 644 1.8e-81 265.2 84.8 7 14 1e-10 1.5e-07 31.5 4.7 1 25 374 398 374 399 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF74-202 - 644 1.8e-81 265.2 84.8 8 14 2.4e-09 3.6e-06 27.1 0.3 2 26 403 427 402 427 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF74-202 - 644 1.8e-81 265.2 84.8 9 14 7.3e-10 1.1e-06 28.8 1.8 2 25 431 454 430 455 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF74-202 - 644 1.8e-81 265.2 84.8 10 14 8.3e-10 1.2e-06 28.6 0.4 4 26 461 483 458 483 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF74-202 - 644 1.8e-81 265.2 84.8 11 14 4.4e-08 6.6e-05 23.2 0.7 4 25 489 510 486 511 0.90 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF74-202 - 644 1.8e-81 265.2 84.8 12 14 7e-11 1e-07 32.0 0.1 2 25 515 538 514 539 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF74-202 - 644 1.8e-81 265.2 84.8 13 14 1.6e-07 0.00024 21.4 0.7 2 24 543 565 543 566 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF74-202 - 644 1.8e-81 265.2 84.8 14 14 0.44 6.5e+02 1.0 0.2 1 14 570 583 570 586 0.84 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZNF74-202 - 644 2.1e-47 157.0 106.6 1 12 9.2e-09 1.4e-05 25.3 0.3 1 23 248 270 248 270 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF74-202 - 644 2.1e-47 157.0 106.6 2 12 1.3e-06 0.0019 18.5 0.3 1 23 276 298 276 298 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF74-202 - 644 2.1e-47 157.0 106.6 3 12 7.7e-06 0.012 16.1 3.0 1 23 304 326 304 326 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF74-202 - 644 2.1e-47 157.0 106.6 4 12 0.00012 0.18 12.3 2.0 1 23 332 354 332 354 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF74-202 - 644 2.1e-47 157.0 106.6 5 12 1.9e-08 2.8e-05 24.3 4.1 1 23 360 382 360 382 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF74-202 - 644 2.1e-47 157.0 106.6 6 12 4.9e-05 0.073 13.6 2.8 1 23 388 410 388 410 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF74-202 - 644 2.1e-47 157.0 106.6 7 12 6.4e-08 9.5e-05 22.6 2.0 1 23 416 438 416 438 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF74-202 - 644 2.1e-47 157.0 106.6 8 12 8.5e-05 0.13 12.8 2.6 1 23 444 466 444 466 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF74-202 - 644 2.1e-47 157.0 106.6 9 12 4e-08 6e-05 23.3 1.0 1 23 472 494 472 494 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF74-202 - 644 2.1e-47 157.0 106.6 10 12 0.00016 0.24 11.9 3.0 1 23 500 522 500 522 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF74-202 - 644 2.1e-47 157.0 106.6 11 12 2.2e-07 0.00033 20.9 4.0 1 23 528 550 528 550 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF74-202 - 644 2.1e-47 157.0 106.6 12 12 1.6e-06 0.0024 18.2 1.7 1 23 556 578 556 578 0.98 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZNF74-202 - 644 1.6e-25 87.6 106.6 1 12 0.00017 0.25 12.3 0.6 1 23 248 270 248 271 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF74-202 - 644 1.6e-25 87.6 106.6 2 12 0.00017 0.25 12.3 0.3 1 23 276 298 276 299 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF74-202 - 644 1.6e-25 87.6 106.6 3 12 7.8e-05 0.12 13.3 3.1 1 23 304 326 304 327 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF74-202 - 644 1.6e-25 87.6 106.6 4 12 7e-05 0.1 13.5 2.6 1 23 332 354 332 355 0.89 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF74-202 - 644 1.6e-25 87.6 106.6 5 12 0.00011 0.16 12.9 2.4 1 23 360 382 360 383 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF74-202 - 644 1.6e-25 87.6 106.6 6 12 4.1e-05 0.061 14.2 2.9 1 23 388 410 388 411 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF74-202 - 644 1.6e-25 87.6 106.6 7 12 3e-05 0.045 14.6 1.4 1 23 416 438 416 439 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF74-202 - 644 1.6e-25 87.6 106.6 8 12 8e-05 0.12 13.3 2.6 1 23 444 466 444 467 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF74-202 - 644 1.6e-25 87.6 106.6 9 12 1.5e-05 0.022 15.5 1.0 1 23 472 494 472 495 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF74-202 - 644 1.6e-25 87.6 106.6 10 12 0.025 38 5.5 3.5 3 23 502 522 500 523 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF74-202 - 644 1.6e-25 87.6 106.6 11 12 3.2e-05 0.047 14.5 3.7 1 23 528 550 528 551 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF74-202 - 644 1.6e-25 87.6 106.6 12 12 0.0014 2.1 9.4 2.0 1 23 556 578 556 579 0.86 C2H2-type zinc finger KRAB PF01352.27 42 ZNF74-202 - 644 9.3e-25 86.0 0.2 1 1 1.1e-27 1.6e-24 85.2 0.2 1 42 42 83 42 83 0.98 KRAB box Zn-ribbon_8 PF09723.10 40 ZNF74-202 - 644 2.4e-07 30.8 62.0 1 12 0.011 16 5.7 0.1 5 17 247 259 247 268 0.82 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF74-202 - 644 2.4e-07 30.8 62.0 2 12 5.1e-05 0.076 13.2 1.8 6 34 276 311 275 314 0.91 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF74-202 - 644 2.4e-07 30.8 62.0 3 12 0.018 26 5.0 5.6 6 34 304 339 303 343 0.90 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF74-202 - 644 2.4e-07 30.8 62.0 4 12 0.059 89 3.3 0.6 6 16 332 342 331 352 0.81 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF74-202 - 644 2.4e-07 30.8 62.0 5 12 5.3e-05 0.079 13.1 2.5 6 34 360 395 359 398 0.89 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF74-202 - 644 2.4e-07 30.8 62.0 6 12 0.0074 11 6.2 5.0 6 34 388 423 386 428 0.84 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF74-202 - 644 2.4e-07 30.8 62.0 7 12 0.013 20 5.4 3.8 6 34 416 451 415 453 0.84 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF74-202 - 644 2.4e-07 30.8 62.0 8 12 0.00042 0.63 10.2 3.8 6 34 444 479 443 482 0.88 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF74-202 - 644 2.4e-07 30.8 62.0 9 12 0.00071 1.1 9.5 1.1 6 32 472 505 470 510 0.88 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF74-202 - 644 2.4e-07 30.8 62.0 10 12 0.0068 10 6.3 3.9 6 35 500 536 499 541 0.83 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF74-202 - 644 2.4e-07 30.8 62.0 11 12 0.0012 1.9 8.7 6.8 6 34 528 563 527 565 0.91 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF74-202 - 644 2.4e-07 30.8 62.0 12 12 0.016 24 5.1 0.7 6 16 556 566 555 580 0.81 Zinc ribbon domain zf-C2H2_11 PF16622.5 29 ZNF74-202 - 644 8.1e-07 28.7 77.7 1 12 0.073 1.1e+02 2.7 0.4 7 24 250 267 248 269 0.84 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF74-202 - 644 8.1e-07 28.7 77.7 2 12 0.00017 0.25 11.1 0.0 4 26 275 297 273 298 0.93 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF74-202 - 644 8.1e-07 28.7 77.7 3 12 0.0024 3.6 7.4 3.5 7 26 306 325 304 326 0.95 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF74-202 - 644 8.1e-07 28.7 77.7 4 12 0.2 3e+02 1.3 3.2 5 26 332 353 330 354 0.92 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF74-202 - 644 8.1e-07 28.7 77.7 5 12 0.0012 1.8 8.4 0.5 5 26 360 381 357 382 0.94 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF74-202 - 644 8.1e-07 28.7 77.7 6 12 0.00037 0.56 10.0 1.1 5 25 388 408 385 410 0.89 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF74-202 - 644 8.1e-07 28.7 77.7 7 12 0.73 1.1e+03 -0.5 0.3 5 21 416 432 415 436 0.79 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF74-202 - 644 8.1e-07 28.7 77.7 8 12 0.0034 5.1 7.0 0.7 5 26 444 465 441 466 0.93 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF74-202 - 644 8.1e-07 28.7 77.7 9 12 4e-05 0.059 13.1 0.2 5 26 472 493 469 494 0.93 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF74-202 - 644 8.1e-07 28.7 77.7 10 12 0.52 7.7e+02 -0.0 2.2 7 26 502 521 499 522 0.90 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF74-202 - 644 8.1e-07 28.7 77.7 11 12 0.00053 0.78 9.5 1.5 5 26 528 549 525 550 0.90 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF74-202 - 644 8.1e-07 28.7 77.7 12 12 0.035 52 3.7 0.1 3 14 554 565 553 577 0.74 zinc-finger C2H2-type # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF74-202.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF74-202.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF74-202.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF74-202.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF74-202.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:13:34 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZNF74-203 - 573 1.7e-82 268.5 84.0 1 14 2.3 3.2e+03 -1.2 0.1 12 19 107 114 105 114 0.88 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF74-203 - 573 1.7e-82 268.5 84.0 2 14 0.011 16 6.1 0.0 11 25 173 187 167 188 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF74-203 - 573 1.7e-82 268.5 84.0 3 14 2.6e-08 3.5e-05 24.0 0.5 2 25 192 215 191 215 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF74-203 - 573 1.7e-82 268.5 84.0 4 14 1.2e-09 1.7e-06 28.2 1.1 1 25 219 243 219 244 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF74-203 - 573 1.7e-82 268.5 84.0 5 14 2.1e-11 2.9e-08 33.8 0.9 1 25 247 271 247 272 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF74-203 - 573 1.7e-82 268.5 84.0 6 14 2.3e-11 3.2e-08 33.6 0.2 2 25 276 299 276 300 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF74-203 - 573 1.7e-82 268.5 84.0 7 14 9.8e-11 1.3e-07 31.7 4.7 1 25 303 327 303 328 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF74-203 - 573 1.7e-82 268.5 84.0 8 14 2.3e-09 3.1e-06 27.3 0.3 2 26 332 356 331 356 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF74-203 - 573 1.7e-82 268.5 84.0 9 14 6.9e-10 9.6e-07 29.0 1.8 2 25 360 383 359 384 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF74-203 - 573 1.7e-82 268.5 84.0 10 14 7.8e-10 1.1e-06 28.8 0.4 4 26 390 412 387 412 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF74-203 - 573 1.7e-82 268.5 84.0 11 14 4.2e-08 5.8e-05 23.3 0.7 4 25 418 439 415 440 0.90 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF74-203 - 573 1.7e-82 268.5 84.0 12 14 6.6e-11 9.1e-08 32.2 0.1 2 25 444 467 443 468 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF74-203 - 573 1.7e-82 268.5 84.0 13 14 1.5e-07 0.00021 21.6 0.7 2 24 472 494 472 495 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF74-203 - 573 1.7e-82 268.5 84.0 14 14 0.42 5.7e+02 1.2 0.2 1 14 499 512 499 515 0.84 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZNF74-203 - 573 4.2e-48 159.2 106.6 1 12 8.7e-09 1.2e-05 25.5 0.3 1 23 177 199 177 199 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF74-203 - 573 4.2e-48 159.2 106.6 2 12 1.2e-06 0.0017 18.7 0.3 1 23 205 227 205 227 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF74-203 - 573 4.2e-48 159.2 106.6 3 12 7.3e-06 0.01 16.3 3.0 1 23 233 255 233 255 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF74-203 - 573 4.2e-48 159.2 106.6 4 12 0.00011 0.16 12.5 2.0 1 23 261 283 261 283 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF74-203 - 573 4.2e-48 159.2 106.6 5 12 1.8e-08 2.4e-05 24.5 4.1 1 23 289 311 289 311 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF74-203 - 573 4.2e-48 159.2 106.6 6 12 4.6e-05 0.064 13.7 2.8 1 23 317 339 317 339 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF74-203 - 573 4.2e-48 159.2 106.6 7 12 6e-08 8.3e-05 22.8 2.0 1 23 345 367 345 367 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF74-203 - 573 4.2e-48 159.2 106.6 8 12 8e-05 0.11 13.0 2.6 1 23 373 395 373 395 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF74-203 - 573 4.2e-48 159.2 106.6 9 12 3.8e-08 5.3e-05 23.5 1.0 1 23 401 423 401 423 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF74-203 - 573 4.2e-48 159.2 106.6 10 12 0.00015 0.21 12.1 3.0 1 23 429 451 429 451 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF74-203 - 573 4.2e-48 159.2 106.6 11 12 2.1e-07 0.00029 21.1 4.0 1 23 457 479 457 479 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF74-203 - 573 4.2e-48 159.2 106.6 12 12 1.5e-06 0.0021 18.4 1.7 1 23 485 507 485 507 0.98 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZNF74-203 - 573 3.1e-26 89.8 106.7 1 12 0.00016 0.21 12.5 0.6 1 23 177 199 177 200 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF74-203 - 573 3.1e-26 89.8 106.7 2 12 0.00016 0.22 12.5 0.3 1 23 205 227 205 228 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF74-203 - 573 3.1e-26 89.8 106.7 3 12 7.3e-05 0.1 13.5 3.1 1 23 233 255 233 256 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF74-203 - 573 3.1e-26 89.8 106.7 4 12 6.6e-05 0.091 13.6 2.6 1 23 261 283 261 284 0.89 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF74-203 - 573 3.1e-26 89.8 106.7 5 12 0.0001 0.14 13.0 2.4 1 23 289 311 289 312 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF74-203 - 573 3.1e-26 89.8 106.7 6 12 3.9e-05 0.053 14.4 2.9 1 23 317 339 317 340 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF74-203 - 573 3.1e-26 89.8 106.7 7 12 2.9e-05 0.039 14.8 1.4 1 23 345 367 345 368 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF74-203 - 573 3.1e-26 89.8 106.7 8 12 7.5e-05 0.1 13.5 2.6 1 23 373 395 373 396 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF74-203 - 573 3.1e-26 89.8 106.7 9 12 1.4e-05 0.019 15.7 1.0 1 23 401 423 401 424 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF74-203 - 573 3.1e-26 89.8 106.7 10 12 0.024 33 5.7 3.5 3 23 431 451 429 452 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF74-203 - 573 3.1e-26 89.8 106.7 11 12 3e-05 0.041 14.7 3.7 1 23 457 479 457 480 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF74-203 - 573 3.1e-26 89.8 106.7 12 12 0.0013 1.8 9.6 2.0 1 23 485 507 485 508 0.86 C2H2-type zinc finger Zn-ribbon_8 PF09723.10 40 ZNF74-203 - 573 5.8e-08 32.7 61.7 1 12 0.01 14 5.9 0.1 5 17 176 188 176 197 0.82 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF74-203 - 573 5.8e-08 32.7 61.7 2 12 4.3e-05 0.059 13.5 1.6 6 34 205 240 204 243 0.91 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF74-203 - 573 5.8e-08 32.7 61.7 3 12 0.017 23 5.2 5.7 6 34 233 268 232 272 0.90 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF74-203 - 573 5.8e-08 32.7 61.7 4 12 0.058 79 3.5 0.6 6 16 261 271 260 281 0.81 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF74-203 - 573 5.8e-08 32.7 61.7 5 12 5.4e-05 0.074 13.2 2.6 6 34 289 324 288 327 0.89 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF74-203 - 573 5.8e-08 32.7 61.7 6 12 0.0069 9.5 6.4 5.0 6 34 317 352 316 357 0.84 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF74-203 - 573 5.8e-08 32.7 61.7 7 12 0.0095 13 6.0 3.3 6 34 345 380 344 381 0.84 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF74-203 - 573 5.8e-08 32.7 61.7 8 12 0.00035 0.48 10.6 3.6 6 34 373 408 372 411 0.88 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF74-203 - 573 5.8e-08 32.7 61.7 9 12 0.00069 0.94 9.6 1.1 6 32 401 434 400 439 0.88 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF74-203 - 573 5.8e-08 32.7 61.7 10 12 0.0052 7.1 6.8 3.7 6 35 429 465 428 470 0.83 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF74-203 - 573 5.8e-08 32.7 61.7 11 12 0.00088 1.2 9.3 6.5 6 34 457 492 456 495 0.91 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF74-203 - 573 5.8e-08 32.7 61.7 12 12 0.015 20 5.4 0.7 6 16 485 495 483 509 0.81 Zinc ribbon domain zf-C2H2_11 PF16622.5 29 ZNF74-203 - 573 1.8e-07 30.8 77.7 1 12 0.069 95 2.9 0.4 7 24 179 196 177 198 0.84 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF74-203 - 573 1.8e-07 30.8 77.7 2 12 0.00016 0.22 11.3 0.0 4 26 204 226 202 227 0.93 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF74-203 - 573 1.8e-07 30.8 77.7 3 12 0.0023 3.2 7.6 3.5 7 26 235 254 233 255 0.95 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF74-203 - 573 1.8e-07 30.8 77.7 4 12 0.19 2.6e+02 1.5 3.2 5 26 261 282 259 283 0.92 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF74-203 - 573 1.8e-07 30.8 77.7 5 12 0.0012 1.6 8.6 0.5 5 26 289 310 286 311 0.94 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF74-203 - 573 1.8e-07 30.8 77.7 6 12 0.00035 0.49 10.2 1.1 5 25 317 337 314 339 0.89 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF74-203 - 573 1.8e-07 30.8 77.7 7 12 0.69 9.6e+02 -0.3 0.3 5 21 345 361 344 365 0.79 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF74-203 - 573 1.8e-07 30.8 77.7 8 12 0.0032 4.4 7.1 0.7 5 26 373 394 370 395 0.93 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF74-203 - 573 1.8e-07 30.8 77.7 9 12 3.8e-05 0.052 13.3 0.2 5 26 401 422 398 423 0.93 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF74-203 - 573 1.8e-07 30.8 77.7 10 12 0.49 6.7e+02 0.2 2.2 7 26 431 450 428 451 0.90 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF74-203 - 573 1.8e-07 30.8 77.7 11 12 0.0005 0.69 9.7 1.5 5 26 457 478 454 479 0.90 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF74-203 - 573 1.8e-07 30.8 77.7 12 12 0.033 46 3.9 0.1 3 14 483 494 482 506 0.74 zinc-finger C2H2-type # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF74-203.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF74-203.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF74-203.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF74-203.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF74-203.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:13:35 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZNF74-204 - 541 7.1e-83 269.6 84.0 1 14 2.4 3e+03 -1.1 0.1 12 19 75 82 73 82 0.88 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF74-204 - 541 7.1e-83 269.6 84.0 2 14 0.012 15 6.2 0.0 11 25 141 155 135 156 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF74-204 - 541 7.1e-83 269.6 84.0 3 14 2.6e-08 3.3e-05 24.1 0.5 2 25 160 183 159 183 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF74-204 - 541 7.1e-83 269.6 84.0 4 14 1.2e-09 1.6e-06 28.3 1.1 1 25 187 211 187 212 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF74-204 - 541 7.1e-83 269.6 84.0 5 14 2.1e-11 2.7e-08 33.9 0.9 1 25 215 239 215 240 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF74-204 - 541 7.1e-83 269.6 84.0 6 14 2.3e-11 3e-08 33.7 0.2 2 25 244 267 244 268 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF74-204 - 541 7.1e-83 269.6 84.0 7 14 9.8e-11 1.3e-07 31.8 4.7 1 25 271 295 271 296 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF74-204 - 541 7.1e-83 269.6 84.0 8 14 2.3e-09 2.9e-06 27.4 0.3 2 26 300 324 299 324 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF74-204 - 541 7.1e-83 269.6 84.0 9 14 7e-10 8.9e-07 29.1 1.8 2 25 328 351 327 352 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF74-204 - 541 7.1e-83 269.6 84.0 10 14 7.9e-10 1e-06 28.9 0.4 4 26 358 380 355 380 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF74-204 - 541 7.1e-83 269.6 84.0 11 14 4.2e-08 5.4e-05 23.4 0.7 4 25 386 407 383 408 0.90 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF74-204 - 541 7.1e-83 269.6 84.0 12 14 6.6e-11 8.5e-08 32.3 0.1 2 25 412 435 411 436 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF74-204 - 541 7.1e-83 269.6 84.0 13 14 1.5e-07 0.00019 21.7 0.7 2 24 440 462 440 463 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF74-204 - 541 7.1e-83 269.6 84.0 14 14 0.42 5.4e+02 1.3 0.2 1 14 467 480 467 483 0.84 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZNF74-204 - 541 1.9e-48 160.2 106.6 1 12 8.7e-09 1.1e-05 25.6 0.3 1 23 145 167 145 167 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF74-204 - 541 1.9e-48 160.2 106.6 2 12 1.2e-06 0.0016 18.8 0.3 1 23 173 195 173 195 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF74-204 - 541 1.9e-48 160.2 106.6 3 12 7.3e-06 0.0094 16.4 3.0 1 23 201 223 201 223 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF74-204 - 541 1.9e-48 160.2 106.6 4 12 0.00011 0.15 12.6 2.0 1 23 229 251 229 251 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF74-204 - 541 1.9e-48 160.2 106.6 5 12 1.8e-08 2.3e-05 24.6 4.1 1 23 257 279 257 279 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF74-204 - 541 1.9e-48 160.2 106.6 6 12 4.7e-05 0.06 13.8 2.8 1 23 285 307 285 307 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF74-204 - 541 1.9e-48 160.2 106.6 7 12 6e-08 7.7e-05 22.9 2.0 1 23 313 335 313 335 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF74-204 - 541 1.9e-48 160.2 106.6 8 12 8.1e-05 0.1 13.1 2.6 1 23 341 363 341 363 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF74-204 - 541 1.9e-48 160.2 106.6 9 12 3.8e-08 4.9e-05 23.5 1.0 1 23 369 391 369 391 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF74-204 - 541 1.9e-48 160.2 106.6 10 12 0.00016 0.2 12.2 3.0 1 23 397 419 397 419 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF74-204 - 541 1.9e-48 160.2 106.6 11 12 2.1e-07 0.00027 21.2 4.0 1 23 425 447 425 447 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF74-204 - 541 1.9e-48 160.2 106.6 12 12 1.5e-06 0.002 18.5 1.7 1 23 453 475 453 475 0.98 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZNF74-204 - 541 1.4e-26 90.8 106.7 1 12 0.00016 0.2 12.6 0.6 1 23 145 167 145 168 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF74-204 - 541 1.4e-26 90.8 106.7 2 12 0.00016 0.2 12.6 0.3 1 23 173 195 173 196 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF74-204 - 541 1.4e-26 90.8 106.7 3 12 7.4e-05 0.094 13.6 3.1 1 23 201 223 201 224 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF74-204 - 541 1.4e-26 90.8 106.7 4 12 6.6e-05 0.085 13.7 2.6 1 23 229 251 229 252 0.89 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF74-204 - 541 1.4e-26 90.8 106.7 5 12 0.0001 0.13 13.1 2.4 1 23 257 279 257 280 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF74-204 - 541 1.4e-26 90.8 106.7 6 12 3.9e-05 0.05 14.5 2.9 1 23 285 307 285 308 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF74-204 - 541 1.4e-26 90.8 106.7 7 12 2.9e-05 0.037 14.9 1.4 1 23 313 335 313 336 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF74-204 - 541 1.4e-26 90.8 106.7 8 12 7.6e-05 0.097 13.6 2.6 1 23 341 363 341 364 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF74-204 - 541 1.4e-26 90.8 106.7 9 12 1.4e-05 0.018 15.8 1.0 1 23 369 391 369 392 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF74-204 - 541 1.4e-26 90.8 106.7 10 12 0.024 31 5.8 3.5 3 23 399 419 397 420 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF74-204 - 541 1.4e-26 90.8 106.7 11 12 3e-05 0.039 14.8 3.7 1 23 425 447 425 448 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF74-204 - 541 1.4e-26 90.8 106.7 12 12 0.0013 1.7 9.7 2.0 1 23 453 475 453 476 0.86 C2H2-type zinc finger Zn-ribbon_8 PF09723.10 40 ZNF74-204 - 541 4.1e-08 33.2 61.9 1 12 0.01 13 6.0 0.1 5 17 144 156 144 165 0.82 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF74-204 - 541 4.1e-08 33.2 61.9 2 12 4.3e-05 0.055 13.6 1.6 6 34 173 208 172 211 0.91 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF74-204 - 541 4.1e-08 33.2 61.9 3 12 0.0092 12 6.1 4.6 6 34 201 236 201 239 0.89 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF74-204 - 541 4.1e-08 33.2 61.9 4 12 0.058 74 3.6 0.6 6 16 229 239 228 249 0.81 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF74-204 - 541 4.1e-08 33.2 61.9 5 12 5.3e-05 0.067 13.3 2.6 6 34 257 292 256 295 0.89 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF74-204 - 541 4.1e-08 33.2 61.9 6 12 0.0068 8.8 6.5 5.0 6 34 285 320 284 327 0.84 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF74-204 - 541 4.1e-08 33.2 61.9 7 12 0.011 15 5.8 3.7 6 34 313 348 311 350 0.84 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF74-204 - 541 4.1e-08 33.2 61.9 8 12 0.00033 0.42 10.8 3.6 6 34 341 376 340 380 0.88 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF74-204 - 541 4.1e-08 33.2 61.9 9 12 0.00065 0.83 9.8 1.0 6 32 369 402 368 407 0.88 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF74-204 - 541 4.1e-08 33.2 61.9 10 12 0.006 7.6 6.7 3.9 6 35 397 433 396 438 0.83 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF74-204 - 541 4.1e-08 33.2 61.9 11 12 0.0011 1.4 9.1 6.8 6 34 425 460 424 463 0.91 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF74-204 - 541 4.1e-08 33.2 61.9 12 12 0.015 19 5.4 0.6 6 16 453 463 451 476 0.82 Zinc ribbon domain zf-C2H2_11 PF16622.5 29 ZNF74-204 - 541 8.2e-08 31.9 77.7 1 12 0.069 89 3.0 0.4 7 24 147 164 145 166 0.84 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF74-204 - 541 8.2e-08 31.9 77.7 2 12 0.00016 0.21 11.4 0.0 4 26 172 194 170 195 0.93 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF74-204 - 541 8.2e-08 31.9 77.7 3 12 0.0023 3 7.7 3.5 7 26 203 222 201 223 0.95 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF74-204 - 541 8.2e-08 31.9 77.7 4 12 0.19 2.4e+02 1.6 3.2 5 26 229 250 227 251 0.92 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF74-204 - 541 8.2e-08 31.9 77.7 5 12 0.0012 1.5 8.6 0.5 5 26 257 278 254 279 0.94 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF74-204 - 541 8.2e-08 31.9 77.7 6 12 0.00035 0.45 10.3 1.1 5 25 285 305 282 307 0.89 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF74-204 - 541 8.2e-08 31.9 77.7 7 12 0.7 9e+02 -0.2 0.3 5 22 313 330 312 333 0.79 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF74-204 - 541 8.2e-08 31.9 77.7 8 12 0.0032 4.2 7.2 0.7 5 26 341 362 338 363 0.93 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF74-204 - 541 8.2e-08 31.9 77.7 9 12 3.8e-05 0.048 13.4 0.2 5 26 369 390 366 391 0.93 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF74-204 - 541 8.2e-08 31.9 77.7 10 12 0.49 6.3e+02 0.3 2.2 7 26 399 418 396 419 0.90 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF74-204 - 541 8.2e-08 31.9 77.7 11 12 0.0005 0.64 9.8 1.5 5 26 425 446 422 447 0.90 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF74-204 - 541 8.2e-08 31.9 77.7 12 12 0.034 43 4.0 0.1 3 14 451 462 450 474 0.74 zinc-finger C2H2-type # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF74-204.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF74-204.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF74-204.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF74-204.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF74-204.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:13:35 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF74-205.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF74-205.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF74-205.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF74-205.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF74-205.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:13:36 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZNF74-206 - 573 1.7e-82 268.5 84.0 1 14 2.3 3.2e+03 -1.2 0.1 12 19 107 114 105 114 0.88 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF74-206 - 573 1.7e-82 268.5 84.0 2 14 0.011 16 6.1 0.0 11 25 173 187 167 188 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF74-206 - 573 1.7e-82 268.5 84.0 3 14 2.6e-08 3.5e-05 24.0 0.5 2 25 192 215 191 215 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF74-206 - 573 1.7e-82 268.5 84.0 4 14 1.2e-09 1.7e-06 28.2 1.1 1 25 219 243 219 244 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF74-206 - 573 1.7e-82 268.5 84.0 5 14 2.1e-11 2.9e-08 33.8 0.9 1 25 247 271 247 272 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF74-206 - 573 1.7e-82 268.5 84.0 6 14 2.3e-11 3.2e-08 33.6 0.2 2 25 276 299 276 300 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF74-206 - 573 1.7e-82 268.5 84.0 7 14 9.8e-11 1.3e-07 31.7 4.7 1 25 303 327 303 328 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF74-206 - 573 1.7e-82 268.5 84.0 8 14 2.3e-09 3.1e-06 27.3 0.3 2 26 332 356 331 356 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF74-206 - 573 1.7e-82 268.5 84.0 9 14 6.9e-10 9.6e-07 29.0 1.8 2 25 360 383 359 384 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF74-206 - 573 1.7e-82 268.5 84.0 10 14 7.8e-10 1.1e-06 28.8 0.4 4 26 390 412 387 412 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF74-206 - 573 1.7e-82 268.5 84.0 11 14 4.2e-08 5.8e-05 23.3 0.7 4 25 418 439 415 440 0.90 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF74-206 - 573 1.7e-82 268.5 84.0 12 14 6.6e-11 9.1e-08 32.2 0.1 2 25 444 467 443 468 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF74-206 - 573 1.7e-82 268.5 84.0 13 14 1.5e-07 0.00021 21.6 0.7 2 24 472 494 472 495 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF74-206 - 573 1.7e-82 268.5 84.0 14 14 0.42 5.7e+02 1.2 0.2 1 14 499 512 499 515 0.84 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZNF74-206 - 573 4.2e-48 159.2 106.6 1 12 8.7e-09 1.2e-05 25.5 0.3 1 23 177 199 177 199 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF74-206 - 573 4.2e-48 159.2 106.6 2 12 1.2e-06 0.0017 18.7 0.3 1 23 205 227 205 227 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF74-206 - 573 4.2e-48 159.2 106.6 3 12 7.3e-06 0.01 16.3 3.0 1 23 233 255 233 255 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF74-206 - 573 4.2e-48 159.2 106.6 4 12 0.00011 0.16 12.5 2.0 1 23 261 283 261 283 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF74-206 - 573 4.2e-48 159.2 106.6 5 12 1.8e-08 2.4e-05 24.5 4.1 1 23 289 311 289 311 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF74-206 - 573 4.2e-48 159.2 106.6 6 12 4.6e-05 0.064 13.7 2.8 1 23 317 339 317 339 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF74-206 - 573 4.2e-48 159.2 106.6 7 12 6e-08 8.3e-05 22.8 2.0 1 23 345 367 345 367 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF74-206 - 573 4.2e-48 159.2 106.6 8 12 8e-05 0.11 13.0 2.6 1 23 373 395 373 395 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF74-206 - 573 4.2e-48 159.2 106.6 9 12 3.8e-08 5.3e-05 23.5 1.0 1 23 401 423 401 423 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF74-206 - 573 4.2e-48 159.2 106.6 10 12 0.00015 0.21 12.1 3.0 1 23 429 451 429 451 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF74-206 - 573 4.2e-48 159.2 106.6 11 12 2.1e-07 0.00029 21.1 4.0 1 23 457 479 457 479 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF74-206 - 573 4.2e-48 159.2 106.6 12 12 1.5e-06 0.0021 18.4 1.7 1 23 485 507 485 507 0.98 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZNF74-206 - 573 3.1e-26 89.8 106.7 1 12 0.00016 0.21 12.5 0.6 1 23 177 199 177 200 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF74-206 - 573 3.1e-26 89.8 106.7 2 12 0.00016 0.22 12.5 0.3 1 23 205 227 205 228 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF74-206 - 573 3.1e-26 89.8 106.7 3 12 7.3e-05 0.1 13.5 3.1 1 23 233 255 233 256 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF74-206 - 573 3.1e-26 89.8 106.7 4 12 6.6e-05 0.091 13.6 2.6 1 23 261 283 261 284 0.89 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF74-206 - 573 3.1e-26 89.8 106.7 5 12 0.0001 0.14 13.0 2.4 1 23 289 311 289 312 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF74-206 - 573 3.1e-26 89.8 106.7 6 12 3.9e-05 0.053 14.4 2.9 1 23 317 339 317 340 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF74-206 - 573 3.1e-26 89.8 106.7 7 12 2.9e-05 0.039 14.8 1.4 1 23 345 367 345 368 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF74-206 - 573 3.1e-26 89.8 106.7 8 12 7.5e-05 0.1 13.5 2.6 1 23 373 395 373 396 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF74-206 - 573 3.1e-26 89.8 106.7 9 12 1.4e-05 0.019 15.7 1.0 1 23 401 423 401 424 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF74-206 - 573 3.1e-26 89.8 106.7 10 12 0.024 33 5.7 3.5 3 23 431 451 429 452 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF74-206 - 573 3.1e-26 89.8 106.7 11 12 3e-05 0.041 14.7 3.7 1 23 457 479 457 480 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF74-206 - 573 3.1e-26 89.8 106.7 12 12 0.0013 1.8 9.6 2.0 1 23 485 507 485 508 0.86 C2H2-type zinc finger Zn-ribbon_8 PF09723.10 40 ZNF74-206 - 573 5.8e-08 32.7 61.7 1 12 0.01 14 5.9 0.1 5 17 176 188 176 197 0.82 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF74-206 - 573 5.8e-08 32.7 61.7 2 12 4.3e-05 0.059 13.5 1.6 6 34 205 240 204 243 0.91 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF74-206 - 573 5.8e-08 32.7 61.7 3 12 0.017 23 5.2 5.7 6 34 233 268 232 272 0.90 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF74-206 - 573 5.8e-08 32.7 61.7 4 12 0.058 79 3.5 0.6 6 16 261 271 260 281 0.81 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF74-206 - 573 5.8e-08 32.7 61.7 5 12 5.4e-05 0.074 13.2 2.6 6 34 289 324 288 327 0.89 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF74-206 - 573 5.8e-08 32.7 61.7 6 12 0.0069 9.5 6.4 5.0 6 34 317 352 316 357 0.84 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF74-206 - 573 5.8e-08 32.7 61.7 7 12 0.0095 13 6.0 3.3 6 34 345 380 344 381 0.84 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF74-206 - 573 5.8e-08 32.7 61.7 8 12 0.00035 0.48 10.6 3.6 6 34 373 408 372 411 0.88 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF74-206 - 573 5.8e-08 32.7 61.7 9 12 0.00069 0.94 9.6 1.1 6 32 401 434 400 439 0.88 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF74-206 - 573 5.8e-08 32.7 61.7 10 12 0.0052 7.1 6.8 3.7 6 35 429 465 428 470 0.83 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF74-206 - 573 5.8e-08 32.7 61.7 11 12 0.00088 1.2 9.3 6.5 6 34 457 492 456 495 0.91 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF74-206 - 573 5.8e-08 32.7 61.7 12 12 0.015 20 5.4 0.7 6 16 485 495 483 509 0.81 Zinc ribbon domain zf-C2H2_11 PF16622.5 29 ZNF74-206 - 573 1.8e-07 30.8 77.7 1 12 0.069 95 2.9 0.4 7 24 179 196 177 198 0.84 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF74-206 - 573 1.8e-07 30.8 77.7 2 12 0.00016 0.22 11.3 0.0 4 26 204 226 202 227 0.93 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF74-206 - 573 1.8e-07 30.8 77.7 3 12 0.0023 3.2 7.6 3.5 7 26 235 254 233 255 0.95 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF74-206 - 573 1.8e-07 30.8 77.7 4 12 0.19 2.6e+02 1.5 3.2 5 26 261 282 259 283 0.92 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF74-206 - 573 1.8e-07 30.8 77.7 5 12 0.0012 1.6 8.6 0.5 5 26 289 310 286 311 0.94 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF74-206 - 573 1.8e-07 30.8 77.7 6 12 0.00035 0.49 10.2 1.1 5 25 317 337 314 339 0.89 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF74-206 - 573 1.8e-07 30.8 77.7 7 12 0.69 9.6e+02 -0.3 0.3 5 21 345 361 344 365 0.79 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF74-206 - 573 1.8e-07 30.8 77.7 8 12 0.0032 4.4 7.1 0.7 5 26 373 394 370 395 0.93 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF74-206 - 573 1.8e-07 30.8 77.7 9 12 3.8e-05 0.052 13.3 0.2 5 26 401 422 398 423 0.93 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF74-206 - 573 1.8e-07 30.8 77.7 10 12 0.49 6.7e+02 0.2 2.2 7 26 431 450 428 451 0.90 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF74-206 - 573 1.8e-07 30.8 77.7 11 12 0.0005 0.69 9.7 1.5 5 26 457 478 454 479 0.90 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF74-206 - 573 1.8e-07 30.8 77.7 12 12 0.033 46 3.9 0.1 3 14 483 494 482 506 0.74 zinc-finger C2H2-type # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF74-206.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF74-206.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF74-206.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF74-206.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF74-206.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:13:36 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZNF74-207 - 541 7e-83 269.7 84.0 1 14 2.4 3e+03 -1.1 0.1 12 19 75 82 73 82 0.88 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF74-207 - 541 7e-83 269.7 84.0 2 14 0.012 15 6.2 0.0 11 25 141 155 135 156 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF74-207 - 541 7e-83 269.7 84.0 3 14 2.6e-08 3.3e-05 24.1 0.5 2 25 160 183 159 183 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF74-207 - 541 7e-83 269.7 84.0 4 14 1.2e-09 1.6e-06 28.3 1.1 1 25 187 211 187 212 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF74-207 - 541 7e-83 269.7 84.0 5 14 2.1e-11 2.7e-08 33.9 0.9 1 25 215 239 215 240 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF74-207 - 541 7e-83 269.7 84.0 6 14 2.3e-11 3e-08 33.7 0.2 2 25 244 267 244 268 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF74-207 - 541 7e-83 269.7 84.0 7 14 9.8e-11 1.3e-07 31.8 4.7 1 25 271 295 271 296 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF74-207 - 541 7e-83 269.7 84.0 8 14 2.3e-09 2.9e-06 27.4 0.3 2 26 300 324 299 324 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF74-207 - 541 7e-83 269.7 84.0 9 14 7e-10 8.9e-07 29.1 1.8 2 25 328 351 327 352 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF74-207 - 541 7e-83 269.7 84.0 10 14 7.9e-10 1e-06 28.9 0.4 4 26 358 380 355 380 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF74-207 - 541 7e-83 269.7 84.0 11 14 4.2e-08 5.4e-05 23.4 0.7 4 25 386 407 383 408 0.90 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF74-207 - 541 7e-83 269.7 84.0 12 14 6.6e-11 8.5e-08 32.3 0.1 2 25 412 435 411 436 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF74-207 - 541 7e-83 269.7 84.0 13 14 1.5e-07 0.00019 21.7 0.7 2 24 440 462 440 463 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF74-207 - 541 7e-83 269.7 84.0 14 14 0.42 5.4e+02 1.3 0.2 1 14 467 480 467 483 0.84 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZNF74-207 - 541 1.9e-48 160.3 106.6 1 12 8.7e-09 1.1e-05 25.6 0.3 1 23 145 167 145 167 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF74-207 - 541 1.9e-48 160.3 106.6 2 12 1.2e-06 0.0016 18.8 0.3 1 23 173 195 173 195 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF74-207 - 541 1.9e-48 160.3 106.6 3 12 7.3e-06 0.0094 16.4 3.0 1 23 201 223 201 223 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF74-207 - 541 1.9e-48 160.3 106.6 4 12 0.00011 0.15 12.6 2.0 1 23 229 251 229 251 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF74-207 - 541 1.9e-48 160.3 106.6 5 12 1.8e-08 2.3e-05 24.6 4.1 1 23 257 279 257 279 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF74-207 - 541 1.9e-48 160.3 106.6 6 12 4.7e-05 0.06 13.8 2.8 1 23 285 307 285 307 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF74-207 - 541 1.9e-48 160.3 106.6 7 12 6e-08 7.7e-05 22.9 2.0 1 23 313 335 313 335 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF74-207 - 541 1.9e-48 160.3 106.6 8 12 8.1e-05 0.1 13.1 2.6 1 23 341 363 341 363 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF74-207 - 541 1.9e-48 160.3 106.6 9 12 3.8e-08 4.9e-05 23.5 1.0 1 23 369 391 369 391 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF74-207 - 541 1.9e-48 160.3 106.6 10 12 0.00016 0.2 12.2 3.0 1 23 397 419 397 419 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF74-207 - 541 1.9e-48 160.3 106.6 11 12 2.1e-07 0.00027 21.2 4.0 1 23 425 447 425 447 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF74-207 - 541 1.9e-48 160.3 106.6 12 12 1.5e-06 0.002 18.5 1.7 1 23 453 475 453 475 0.98 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZNF74-207 - 541 1.4e-26 90.9 106.7 1 12 0.00016 0.2 12.6 0.6 1 23 145 167 145 168 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF74-207 - 541 1.4e-26 90.9 106.7 2 12 0.00016 0.2 12.6 0.3 1 23 173 195 173 196 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF74-207 - 541 1.4e-26 90.9 106.7 3 12 7.4e-05 0.094 13.6 3.1 1 23 201 223 201 224 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF74-207 - 541 1.4e-26 90.9 106.7 4 12 6.6e-05 0.085 13.7 2.6 1 23 229 251 229 252 0.89 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF74-207 - 541 1.4e-26 90.9 106.7 5 12 0.0001 0.13 13.1 2.4 1 23 257 279 257 280 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF74-207 - 541 1.4e-26 90.9 106.7 6 12 3.9e-05 0.05 14.5 2.9 1 23 285 307 285 308 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF74-207 - 541 1.4e-26 90.9 106.7 7 12 2.9e-05 0.037 14.9 1.4 1 23 313 335 313 336 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF74-207 - 541 1.4e-26 90.9 106.7 8 12 7.6e-05 0.097 13.6 2.6 1 23 341 363 341 364 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF74-207 - 541 1.4e-26 90.9 106.7 9 12 1.4e-05 0.018 15.8 1.0 1 23 369 391 369 392 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF74-207 - 541 1.4e-26 90.9 106.7 10 12 0.024 31 5.8 3.5 3 23 399 419 397 420 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF74-207 - 541 1.4e-26 90.9 106.7 11 12 3e-05 0.039 14.8 3.7 1 23 425 447 425 448 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF74-207 - 541 1.4e-26 90.9 106.7 12 12 0.0013 1.7 9.7 2.0 1 23 453 475 453 476 0.86 C2H2-type zinc finger Zn-ribbon_8 PF09723.10 40 ZNF74-207 - 541 4e-08 33.2 61.9 1 12 0.01 13 6.0 0.1 5 17 144 156 144 165 0.82 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF74-207 - 541 4e-08 33.2 61.9 2 12 4.3e-05 0.055 13.6 1.6 6 34 173 208 172 211 0.91 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF74-207 - 541 4e-08 33.2 61.9 3 12 0.0092 12 6.1 4.6 6 34 201 236 201 239 0.89 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF74-207 - 541 4e-08 33.2 61.9 4 12 0.058 74 3.6 0.6 6 16 229 239 228 249 0.81 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF74-207 - 541 4e-08 33.2 61.9 5 12 5.3e-05 0.067 13.3 2.6 6 34 257 292 256 295 0.89 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF74-207 - 541 4e-08 33.2 61.9 6 12 0.0068 8.8 6.5 5.0 6 34 285 320 284 327 0.84 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF74-207 - 541 4e-08 33.2 61.9 7 12 0.011 15 5.8 3.7 6 34 313 348 311 350 0.84 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF74-207 - 541 4e-08 33.2 61.9 8 12 0.00033 0.42 10.8 3.6 6 34 341 376 340 380 0.88 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF74-207 - 541 4e-08 33.2 61.9 9 12 0.00065 0.83 9.8 1.0 6 32 369 402 368 407 0.88 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF74-207 - 541 4e-08 33.2 61.9 10 12 0.006 7.6 6.7 3.9 6 35 397 433 396 438 0.83 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF74-207 - 541 4e-08 33.2 61.9 11 12 0.0011 1.4 9.1 6.8 6 34 425 460 424 463 0.91 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF74-207 - 541 4e-08 33.2 61.9 12 12 0.015 19 5.4 0.6 6 16 453 463 451 476 0.82 Zinc ribbon domain zf-C2H2_11 PF16622.5 29 ZNF74-207 - 541 8.2e-08 31.9 77.7 1 12 0.069 89 3.0 0.4 7 24 147 164 145 166 0.84 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF74-207 - 541 8.2e-08 31.9 77.7 2 12 0.00016 0.21 11.4 0.0 4 26 172 194 170 195 0.93 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF74-207 - 541 8.2e-08 31.9 77.7 3 12 0.0023 3 7.7 3.5 7 26 203 222 201 223 0.95 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF74-207 - 541 8.2e-08 31.9 77.7 4 12 0.19 2.4e+02 1.6 3.2 5 26 229 250 227 251 0.92 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF74-207 - 541 8.2e-08 31.9 77.7 5 12 0.0012 1.5 8.6 0.5 5 26 257 278 254 279 0.94 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF74-207 - 541 8.2e-08 31.9 77.7 6 12 0.00035 0.45 10.3 1.1 5 25 285 305 282 307 0.89 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF74-207 - 541 8.2e-08 31.9 77.7 7 12 0.7 9e+02 -0.2 0.3 5 22 313 330 312 333 0.79 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF74-207 - 541 8.2e-08 31.9 77.7 8 12 0.0032 4.2 7.2 0.7 5 26 341 362 338 363 0.93 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF74-207 - 541 8.2e-08 31.9 77.7 9 12 3.8e-05 0.048 13.4 0.2 5 26 369 390 366 391 0.93 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF74-207 - 541 8.2e-08 31.9 77.7 10 12 0.49 6.3e+02 0.3 2.2 7 26 399 418 396 419 0.90 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF74-207 - 541 8.2e-08 31.9 77.7 11 12 0.0005 0.64 9.8 1.5 5 26 425 446 422 447 0.90 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF74-207 - 541 8.2e-08 31.9 77.7 12 12 0.034 43 4.0 0.1 3 14 451 462 450 474 0.74 zinc-finger C2H2-type # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF74-207.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF74-207.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF74-207.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF74-207.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF74-207.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:13:37 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZNF74-208 - 573 1.7e-82 268.5 84.0 1 14 2.3 3.2e+03 -1.2 0.1 12 19 107 114 105 114 0.88 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF74-208 - 573 1.7e-82 268.5 84.0 2 14 0.011 16 6.1 0.0 11 25 173 187 167 188 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF74-208 - 573 1.7e-82 268.5 84.0 3 14 2.6e-08 3.5e-05 24.0 0.5 2 25 192 215 191 215 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF74-208 - 573 1.7e-82 268.5 84.0 4 14 1.2e-09 1.7e-06 28.2 1.1 1 25 219 243 219 244 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF74-208 - 573 1.7e-82 268.5 84.0 5 14 2.1e-11 2.9e-08 33.8 0.9 1 25 247 271 247 272 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF74-208 - 573 1.7e-82 268.5 84.0 6 14 2.3e-11 3.2e-08 33.6 0.2 2 25 276 299 276 300 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF74-208 - 573 1.7e-82 268.5 84.0 7 14 9.8e-11 1.3e-07 31.7 4.7 1 25 303 327 303 328 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF74-208 - 573 1.7e-82 268.5 84.0 8 14 2.3e-09 3.1e-06 27.3 0.3 2 26 332 356 331 356 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF74-208 - 573 1.7e-82 268.5 84.0 9 14 6.9e-10 9.6e-07 29.0 1.8 2 25 360 383 359 384 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF74-208 - 573 1.7e-82 268.5 84.0 10 14 7.8e-10 1.1e-06 28.8 0.4 4 26 390 412 387 412 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF74-208 - 573 1.7e-82 268.5 84.0 11 14 4.2e-08 5.8e-05 23.3 0.7 4 25 418 439 415 440 0.90 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF74-208 - 573 1.7e-82 268.5 84.0 12 14 6.6e-11 9.1e-08 32.2 0.1 2 25 444 467 443 468 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF74-208 - 573 1.7e-82 268.5 84.0 13 14 1.5e-07 0.00021 21.6 0.7 2 24 472 494 472 495 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF74-208 - 573 1.7e-82 268.5 84.0 14 14 0.42 5.7e+02 1.2 0.2 1 14 499 512 499 515 0.84 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZNF74-208 - 573 4.2e-48 159.2 106.6 1 12 8.7e-09 1.2e-05 25.5 0.3 1 23 177 199 177 199 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF74-208 - 573 4.2e-48 159.2 106.6 2 12 1.2e-06 0.0017 18.7 0.3 1 23 205 227 205 227 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF74-208 - 573 4.2e-48 159.2 106.6 3 12 7.3e-06 0.01 16.3 3.0 1 23 233 255 233 255 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF74-208 - 573 4.2e-48 159.2 106.6 4 12 0.00011 0.16 12.5 2.0 1 23 261 283 261 283 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF74-208 - 573 4.2e-48 159.2 106.6 5 12 1.8e-08 2.4e-05 24.5 4.1 1 23 289 311 289 311 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF74-208 - 573 4.2e-48 159.2 106.6 6 12 4.6e-05 0.064 13.7 2.8 1 23 317 339 317 339 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF74-208 - 573 4.2e-48 159.2 106.6 7 12 6e-08 8.3e-05 22.8 2.0 1 23 345 367 345 367 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF74-208 - 573 4.2e-48 159.2 106.6 8 12 8e-05 0.11 13.0 2.6 1 23 373 395 373 395 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF74-208 - 573 4.2e-48 159.2 106.6 9 12 3.8e-08 5.3e-05 23.5 1.0 1 23 401 423 401 423 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF74-208 - 573 4.2e-48 159.2 106.6 10 12 0.00015 0.21 12.1 3.0 1 23 429 451 429 451 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF74-208 - 573 4.2e-48 159.2 106.6 11 12 2.1e-07 0.00029 21.1 4.0 1 23 457 479 457 479 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF74-208 - 573 4.2e-48 159.2 106.6 12 12 1.5e-06 0.0021 18.4 1.7 1 23 485 507 485 507 0.98 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZNF74-208 - 573 3.1e-26 89.8 106.7 1 12 0.00016 0.21 12.5 0.6 1 23 177 199 177 200 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF74-208 - 573 3.1e-26 89.8 106.7 2 12 0.00016 0.22 12.5 0.3 1 23 205 227 205 228 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF74-208 - 573 3.1e-26 89.8 106.7 3 12 7.3e-05 0.1 13.5 3.1 1 23 233 255 233 256 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF74-208 - 573 3.1e-26 89.8 106.7 4 12 6.6e-05 0.091 13.6 2.6 1 23 261 283 261 284 0.89 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF74-208 - 573 3.1e-26 89.8 106.7 5 12 0.0001 0.14 13.0 2.4 1 23 289 311 289 312 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF74-208 - 573 3.1e-26 89.8 106.7 6 12 3.9e-05 0.053 14.4 2.9 1 23 317 339 317 340 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF74-208 - 573 3.1e-26 89.8 106.7 7 12 2.9e-05 0.039 14.8 1.4 1 23 345 367 345 368 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF74-208 - 573 3.1e-26 89.8 106.7 8 12 7.5e-05 0.1 13.5 2.6 1 23 373 395 373 396 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF74-208 - 573 3.1e-26 89.8 106.7 9 12 1.4e-05 0.019 15.7 1.0 1 23 401 423 401 424 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF74-208 - 573 3.1e-26 89.8 106.7 10 12 0.024 33 5.7 3.5 3 23 431 451 429 452 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF74-208 - 573 3.1e-26 89.8 106.7 11 12 3e-05 0.041 14.7 3.7 1 23 457 479 457 480 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF74-208 - 573 3.1e-26 89.8 106.7 12 12 0.0013 1.8 9.6 2.0 1 23 485 507 485 508 0.86 C2H2-type zinc finger Zn-ribbon_8 PF09723.10 40 ZNF74-208 - 573 5.8e-08 32.7 61.7 1 12 0.01 14 5.9 0.1 5 17 176 188 176 197 0.82 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF74-208 - 573 5.8e-08 32.7 61.7 2 12 4.3e-05 0.059 13.5 1.6 6 34 205 240 204 243 0.91 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF74-208 - 573 5.8e-08 32.7 61.7 3 12 0.017 23 5.2 5.7 6 34 233 268 232 272 0.90 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF74-208 - 573 5.8e-08 32.7 61.7 4 12 0.058 79 3.5 0.6 6 16 261 271 260 281 0.81 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF74-208 - 573 5.8e-08 32.7 61.7 5 12 5.4e-05 0.074 13.2 2.6 6 34 289 324 288 327 0.89 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF74-208 - 573 5.8e-08 32.7 61.7 6 12 0.0069 9.5 6.4 5.0 6 34 317 352 316 357 0.84 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF74-208 - 573 5.8e-08 32.7 61.7 7 12 0.0095 13 6.0 3.3 6 34 345 380 344 381 0.84 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF74-208 - 573 5.8e-08 32.7 61.7 8 12 0.00035 0.48 10.6 3.6 6 34 373 408 372 411 0.88 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF74-208 - 573 5.8e-08 32.7 61.7 9 12 0.00069 0.94 9.6 1.1 6 32 401 434 400 439 0.88 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF74-208 - 573 5.8e-08 32.7 61.7 10 12 0.0052 7.1 6.8 3.7 6 35 429 465 428 470 0.83 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF74-208 - 573 5.8e-08 32.7 61.7 11 12 0.00088 1.2 9.3 6.5 6 34 457 492 456 495 0.91 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF74-208 - 573 5.8e-08 32.7 61.7 12 12 0.015 20 5.4 0.7 6 16 485 495 483 509 0.81 Zinc ribbon domain zf-C2H2_11 PF16622.5 29 ZNF74-208 - 573 1.8e-07 30.8 77.7 1 12 0.069 95 2.9 0.4 7 24 179 196 177 198 0.84 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF74-208 - 573 1.8e-07 30.8 77.7 2 12 0.00016 0.22 11.3 0.0 4 26 204 226 202 227 0.93 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF74-208 - 573 1.8e-07 30.8 77.7 3 12 0.0023 3.2 7.6 3.5 7 26 235 254 233 255 0.95 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF74-208 - 573 1.8e-07 30.8 77.7 4 12 0.19 2.6e+02 1.5 3.2 5 26 261 282 259 283 0.92 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF74-208 - 573 1.8e-07 30.8 77.7 5 12 0.0012 1.6 8.6 0.5 5 26 289 310 286 311 0.94 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF74-208 - 573 1.8e-07 30.8 77.7 6 12 0.00035 0.49 10.2 1.1 5 25 317 337 314 339 0.89 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF74-208 - 573 1.8e-07 30.8 77.7 7 12 0.69 9.6e+02 -0.3 0.3 5 21 345 361 344 365 0.79 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF74-208 - 573 1.8e-07 30.8 77.7 8 12 0.0032 4.4 7.1 0.7 5 26 373 394 370 395 0.93 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF74-208 - 573 1.8e-07 30.8 77.7 9 12 3.8e-05 0.052 13.3 0.2 5 26 401 422 398 423 0.93 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF74-208 - 573 1.8e-07 30.8 77.7 10 12 0.49 6.7e+02 0.2 2.2 7 26 431 450 428 451 0.90 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF74-208 - 573 1.8e-07 30.8 77.7 11 12 0.0005 0.69 9.7 1.5 5 26 457 478 454 479 0.90 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF74-208 - 573 1.8e-07 30.8 77.7 12 12 0.033 46 3.9 0.1 3 14 483 494 482 506 0.74 zinc-finger C2H2-type # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF74-208.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF74-208.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF74-208.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF74-208.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF74-208.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:13:37 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZNF74-209 - 644 1.8e-81 265.2 84.8 1 14 2.7 4.1e+03 -1.5 0.1 12 19 178 185 177 185 0.88 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF74-209 - 644 1.8e-81 265.2 84.8 2 14 0.012 18 6.0 0.0 11 25 244 258 238 259 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF74-209 - 644 1.8e-81 265.2 84.8 3 14 2.7e-08 4.1e-05 23.8 0.5 2 25 263 286 262 286 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF74-209 - 644 1.8e-81 265.2 84.8 4 14 1.3e-09 1.9e-06 28.0 1.1 1 25 290 314 290 315 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF74-209 - 644 1.8e-81 265.2 84.8 5 14 2.2e-11 3.4e-08 33.6 0.9 1 25 318 342 318 343 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF74-209 - 644 1.8e-81 265.2 84.8 6 14 2.5e-11 3.7e-08 33.4 0.2 2 25 347 370 347 371 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF74-209 - 644 1.8e-81 265.2 84.8 7 14 1e-10 1.5e-07 31.5 4.7 1 25 374 398 374 399 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF74-209 - 644 1.8e-81 265.2 84.8 8 14 2.4e-09 3.6e-06 27.1 0.3 2 26 403 427 402 427 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF74-209 - 644 1.8e-81 265.2 84.8 9 14 7.3e-10 1.1e-06 28.8 1.8 2 25 431 454 430 455 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF74-209 - 644 1.8e-81 265.2 84.8 10 14 8.3e-10 1.2e-06 28.6 0.4 4 26 461 483 458 483 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF74-209 - 644 1.8e-81 265.2 84.8 11 14 4.4e-08 6.6e-05 23.2 0.7 4 25 489 510 486 511 0.90 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF74-209 - 644 1.8e-81 265.2 84.8 12 14 7e-11 1e-07 32.0 0.1 2 25 515 538 514 539 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF74-209 - 644 1.8e-81 265.2 84.8 13 14 1.6e-07 0.00024 21.4 0.7 2 24 543 565 543 566 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF74-209 - 644 1.8e-81 265.2 84.8 14 14 0.44 6.5e+02 1.0 0.2 1 14 570 583 570 586 0.84 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZNF74-209 - 644 2.1e-47 157.0 106.6 1 12 9.2e-09 1.4e-05 25.3 0.3 1 23 248 270 248 270 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF74-209 - 644 2.1e-47 157.0 106.6 2 12 1.3e-06 0.0019 18.5 0.3 1 23 276 298 276 298 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF74-209 - 644 2.1e-47 157.0 106.6 3 12 7.7e-06 0.012 16.1 3.0 1 23 304 326 304 326 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF74-209 - 644 2.1e-47 157.0 106.6 4 12 0.00012 0.18 12.3 2.0 1 23 332 354 332 354 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF74-209 - 644 2.1e-47 157.0 106.6 5 12 1.9e-08 2.8e-05 24.3 4.1 1 23 360 382 360 382 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF74-209 - 644 2.1e-47 157.0 106.6 6 12 4.9e-05 0.073 13.6 2.8 1 23 388 410 388 410 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF74-209 - 644 2.1e-47 157.0 106.6 7 12 6.4e-08 9.5e-05 22.6 2.0 1 23 416 438 416 438 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF74-209 - 644 2.1e-47 157.0 106.6 8 12 8.5e-05 0.13 12.8 2.6 1 23 444 466 444 466 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF74-209 - 644 2.1e-47 157.0 106.6 9 12 4e-08 6e-05 23.3 1.0 1 23 472 494 472 494 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF74-209 - 644 2.1e-47 157.0 106.6 10 12 0.00016 0.24 11.9 3.0 1 23 500 522 500 522 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF74-209 - 644 2.1e-47 157.0 106.6 11 12 2.2e-07 0.00033 20.9 4.0 1 23 528 550 528 550 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF74-209 - 644 2.1e-47 157.0 106.6 12 12 1.6e-06 0.0024 18.2 1.7 1 23 556 578 556 578 0.98 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZNF74-209 - 644 1.6e-25 87.6 106.6 1 12 0.00017 0.25 12.3 0.6 1 23 248 270 248 271 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF74-209 - 644 1.6e-25 87.6 106.6 2 12 0.00017 0.25 12.3 0.3 1 23 276 298 276 299 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF74-209 - 644 1.6e-25 87.6 106.6 3 12 7.8e-05 0.12 13.3 3.1 1 23 304 326 304 327 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF74-209 - 644 1.6e-25 87.6 106.6 4 12 7e-05 0.1 13.5 2.6 1 23 332 354 332 355 0.89 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF74-209 - 644 1.6e-25 87.6 106.6 5 12 0.00011 0.16 12.9 2.4 1 23 360 382 360 383 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF74-209 - 644 1.6e-25 87.6 106.6 6 12 4.1e-05 0.061 14.2 2.9 1 23 388 410 388 411 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF74-209 - 644 1.6e-25 87.6 106.6 7 12 3e-05 0.045 14.6 1.4 1 23 416 438 416 439 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF74-209 - 644 1.6e-25 87.6 106.6 8 12 8e-05 0.12 13.3 2.6 1 23 444 466 444 467 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF74-209 - 644 1.6e-25 87.6 106.6 9 12 1.5e-05 0.022 15.5 1.0 1 23 472 494 472 495 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF74-209 - 644 1.6e-25 87.6 106.6 10 12 0.025 38 5.5 3.5 3 23 502 522 500 523 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF74-209 - 644 1.6e-25 87.6 106.6 11 12 3.2e-05 0.047 14.5 3.7 1 23 528 550 528 551 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF74-209 - 644 1.6e-25 87.6 106.6 12 12 0.0014 2.1 9.4 2.0 1 23 556 578 556 579 0.86 C2H2-type zinc finger KRAB PF01352.27 42 ZNF74-209 - 644 9.3e-25 86.0 0.2 1 1 1.1e-27 1.6e-24 85.2 0.2 1 42 42 83 42 83 0.98 KRAB box Zn-ribbon_8 PF09723.10 40 ZNF74-209 - 644 2.4e-07 30.8 62.0 1 12 0.011 16 5.7 0.1 5 17 247 259 247 268 0.82 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF74-209 - 644 2.4e-07 30.8 62.0 2 12 5.1e-05 0.076 13.2 1.8 6 34 276 311 275 314 0.91 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF74-209 - 644 2.4e-07 30.8 62.0 3 12 0.018 26 5.0 5.6 6 34 304 339 303 343 0.90 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF74-209 - 644 2.4e-07 30.8 62.0 4 12 0.059 89 3.3 0.6 6 16 332 342 331 352 0.81 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF74-209 - 644 2.4e-07 30.8 62.0 5 12 5.3e-05 0.079 13.1 2.5 6 34 360 395 359 398 0.89 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF74-209 - 644 2.4e-07 30.8 62.0 6 12 0.0074 11 6.2 5.0 6 34 388 423 386 428 0.84 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF74-209 - 644 2.4e-07 30.8 62.0 7 12 0.013 20 5.4 3.8 6 34 416 451 415 453 0.84 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF74-209 - 644 2.4e-07 30.8 62.0 8 12 0.00042 0.63 10.2 3.8 6 34 444 479 443 482 0.88 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF74-209 - 644 2.4e-07 30.8 62.0 9 12 0.00071 1.1 9.5 1.1 6 32 472 505 470 510 0.88 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF74-209 - 644 2.4e-07 30.8 62.0 10 12 0.0068 10 6.3 3.9 6 35 500 536 499 541 0.83 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF74-209 - 644 2.4e-07 30.8 62.0 11 12 0.0012 1.9 8.7 6.8 6 34 528 563 527 565 0.91 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF74-209 - 644 2.4e-07 30.8 62.0 12 12 0.016 24 5.1 0.7 6 16 556 566 555 580 0.81 Zinc ribbon domain zf-C2H2_11 PF16622.5 29 ZNF74-209 - 644 8.1e-07 28.7 77.7 1 12 0.073 1.1e+02 2.7 0.4 7 24 250 267 248 269 0.84 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF74-209 - 644 8.1e-07 28.7 77.7 2 12 0.00017 0.25 11.1 0.0 4 26 275 297 273 298 0.93 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF74-209 - 644 8.1e-07 28.7 77.7 3 12 0.0024 3.6 7.4 3.5 7 26 306 325 304 326 0.95 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF74-209 - 644 8.1e-07 28.7 77.7 4 12 0.2 3e+02 1.3 3.2 5 26 332 353 330 354 0.92 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF74-209 - 644 8.1e-07 28.7 77.7 5 12 0.0012 1.8 8.4 0.5 5 26 360 381 357 382 0.94 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF74-209 - 644 8.1e-07 28.7 77.7 6 12 0.00037 0.56 10.0 1.1 5 25 388 408 385 410 0.89 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF74-209 - 644 8.1e-07 28.7 77.7 7 12 0.73 1.1e+03 -0.5 0.3 5 21 416 432 415 436 0.79 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF74-209 - 644 8.1e-07 28.7 77.7 8 12 0.0034 5.1 7.0 0.7 5 26 444 465 441 466 0.93 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF74-209 - 644 8.1e-07 28.7 77.7 9 12 4e-05 0.059 13.1 0.2 5 26 472 493 469 494 0.93 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF74-209 - 644 8.1e-07 28.7 77.7 10 12 0.52 7.7e+02 -0.0 2.2 7 26 502 521 499 522 0.90 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF74-209 - 644 8.1e-07 28.7 77.7 11 12 0.00053 0.78 9.5 1.5 5 26 528 549 525 550 0.90 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF74-209 - 644 8.1e-07 28.7 77.7 12 12 0.035 52 3.7 0.1 3 14 554 565 553 577 0.74 zinc-finger C2H2-type # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF74-209.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF74-209.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF74-209.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF74-209.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF74-209.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:13:38 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- KRAB PF01352.27 42 ZNF747-201 - 191 4.8e-22 77.3 0.0 1 1 3.9e-26 6.9e-22 76.8 0.0 2 42 37 77 36 77 0.97 KRAB box # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF747-201.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF747-201.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF747-201.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF747-201.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF747-201.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:13:38 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- KRAB PF01352.27 42 ZNF747-202 - 190 4.8e-22 77.3 0.0 1 1 3.8e-26 6.9e-22 76.8 0.0 2 42 37 77 36 77 0.97 KRAB box # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF747-202.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF747-202.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF747-202.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF747-202.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF747-202.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:13:38 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZNF747-203 - 330 9.4e-23 79.6 23.3 1 4 0.22 1.4e+02 3.1 0.1 17 25 183 191 174 191 0.89 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF747-203 - 330 9.4e-23 79.6 23.3 2 4 3.9e-09 2.5e-06 27.7 1.1 2 26 196 220 195 220 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF747-203 - 330 9.4e-23 79.6 23.3 3 4 2.5e-09 1.6e-06 28.3 0.9 1 24 223 246 223 246 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF747-203 - 330 9.4e-23 79.6 23.3 4 4 2.7e-11 1.7e-08 34.5 1.0 1 24 251 274 251 275 0.94 Zinc-finger double domain KRAB PF01352.27 42 ZNF747-203 - 330 9.7e-22 76.4 0.0 1 1 2.5e-24 1.6e-21 75.6 0.0 2 42 37 77 36 77 0.97 KRAB box zf-C2H2 PF00096.26 23 ZNF747-203 - 330 1.3e-14 53.7 21.7 1 4 0.00029 0.18 12.3 0.2 3 23 183 203 183 203 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF747-203 - 330 1.3e-14 53.7 21.7 2 4 3e-06 0.0019 18.5 1.2 1 23 209 231 209 231 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF747-203 - 330 1.3e-14 53.7 21.7 3 4 7.9e-08 5e-05 23.5 1.2 1 23 237 259 237 259 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF747-203 - 330 1.3e-14 53.7 21.7 4 4 0.00029 0.19 12.3 1.0 1 20 265 284 265 287 0.92 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZNF747-203 - 330 6.4e-08 32.8 24.4 1 4 0.016 10 7.3 0.8 3 23 183 203 181 204 0.83 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF747-203 - 330 6.4e-08 32.8 24.4 2 4 0.0025 1.6 9.8 1.3 1 23 209 231 209 232 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF747-203 - 330 6.4e-08 32.8 24.4 3 4 9.2e-06 0.0059 17.3 0.9 1 23 237 259 237 260 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF747-203 - 330 6.4e-08 32.8 24.4 4 4 0.00016 0.1 13.5 1.3 1 23 265 287 265 288 0.91 C2H2-type zinc finger # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF747-203.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF747-203.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF747-203.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF747-203.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF747-203.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:13:39 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZNF749-201 - 778 1e-99 322.9 121.4 1 21 0.76 8.6e+02 0.7 0.1 1 17 98 114 98 116 0.73 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF749-201 - 778 1e-99 322.9 121.4 2 21 0.27 3.1e+02 2.1 0.0 9 25 146 162 142 163 0.88 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF749-201 - 778 1e-99 322.9 121.4 3 21 0.00032 0.36 11.4 0.1 2 24 211 233 210 235 0.82 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF749-201 - 778 1e-99 322.9 121.4 4 21 0.89 1e+03 0.5 0.0 8 24 245 261 243 263 0.79 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF749-201 - 778 1e-99 322.9 121.4 5 21 1.6e-05 0.018 15.4 1.0 1 26 266 309 266 309 0.74 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF749-201 - 778 1e-99 322.9 121.4 6 21 8.3e-09 9.3e-06 25.8 2.1 1 24 312 335 312 335 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF749-201 - 778 1e-99 322.9 121.4 7 21 1.2e-09 1.3e-06 28.5 0.7 2 24 341 363 340 363 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF749-201 - 778 1e-99 322.9 121.4 8 21 7.4e-11 8.3e-08 32.3 1.0 4 26 371 393 369 393 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF749-201 - 778 1e-99 322.9 121.4 9 21 1.6e-08 1.8e-05 24.9 0.3 2 25 397 420 396 420 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF749-201 - 778 1e-99 322.9 121.4 10 21 6.4e-11 7.2e-08 32.5 0.2 2 26 425 449 424 449 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF749-201 - 778 1e-99 322.9 121.4 11 21 9.9e-07 0.0011 19.3 0.4 1 26 452 494 452 494 0.77 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF749-201 - 778 1e-99 322.9 121.4 12 21 1.3e-10 1.4e-07 31.6 0.5 1 26 497 522 497 522 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF749-201 - 778 1e-99 322.9 121.4 13 21 4.5e-06 0.0051 17.2 0.2 1 26 525 567 525 567 0.75 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF749-201 - 778 1e-99 322.9 121.4 14 21 6.1e-07 0.00068 19.9 0.2 2 24 571 593 570 594 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF749-201 - 778 1e-99 322.9 121.4 15 21 1.6e-10 1.8e-07 31.3 2.0 2 25 599 622 598 623 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF749-201 - 778 1e-99 322.9 121.4 16 21 1.3e-11 1.4e-08 34.7 1.2 2 24 627 649 626 650 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF749-201 - 778 1e-99 322.9 121.4 17 21 1.3e-09 1.4e-06 28.4 0.4 5 22 658 675 654 677 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF749-201 - 778 1e-99 322.9 121.4 18 21 0.0002 0.22 12.0 5.1 8 24 685 705 683 707 0.76 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF749-201 - 778 1e-99 322.9 121.4 19 21 0.00037 0.41 11.2 0.0 5 25 714 734 710 735 0.88 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF749-201 - 778 1e-99 322.9 121.4 20 21 0.0013 1.5 9.4 0.3 7 25 743 761 742 762 0.87 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF749-201 - 778 1e-99 322.9 121.4 21 21 0.036 41 4.9 0.1 2 14 766 778 765 778 0.90 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZNF749-201 - 778 1.5e-58 192.1 147.2 1 23 6.9 7.8e+03 -2.3 0.1 3 18 86 101 85 102 0.64 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF749-201 - 778 1.5e-58 192.1 147.2 2 23 3.9 4.3e+03 -1.5 0.0 3 16 154 167 152 169 0.71 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF749-201 - 778 1.5e-58 192.1 147.2 3 23 0.016 18 6.0 0.9 7 23 202 218 202 218 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF749-201 - 778 1.5e-58 192.1 147.2 4 23 0.28 3.1e+02 2.1 0.0 5 18 228 241 227 241 0.90 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF749-201 - 778 1.5e-58 192.1 147.2 5 23 0.00012 0.13 12.8 0.2 7 23 258 274 258 274 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF749-201 - 778 1.5e-58 192.1 147.2 6 23 3.3e-06 0.0037 17.6 0.6 1 23 298 320 298 320 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF749-201 - 778 1.5e-58 192.1 147.2 7 23 5.9e-07 0.00066 20.0 1.9 1 23 326 348 326 348 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF749-201 - 778 1.5e-58 192.1 147.2 8 23 1.1e-05 0.012 16.0 0.5 1 23 354 376 354 376 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF749-201 - 778 1.5e-58 192.1 147.2 9 23 1.5e-07 0.00017 21.9 2.9 1 23 382 404 382 404 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF749-201 - 778 1.5e-58 192.1 147.2 10 23 1.5e-06 0.0017 18.7 1.1 1 23 410 432 410 432 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF749-201 - 778 1.5e-58 192.1 147.2 11 23 3.1e-08 3.5e-05 24.0 1.2 1 23 438 460 438 460 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF749-201 - 778 1.5e-58 192.1 147.2 12 23 0.37 4.1e+02 1.7 0.0 10 21 464 475 463 476 0.90 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF749-201 - 778 1.5e-58 192.1 147.2 13 23 3e-06 0.0033 17.8 0.4 1 23 483 505 483 505 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF749-201 - 778 1.5e-58 192.1 147.2 14 23 1.3e-06 0.0014 18.9 1.0 1 23 511 533 511 533 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF749-201 - 778 1.5e-58 192.1 147.2 15 23 0.37 4.1e+02 1.7 0.0 10 21 537 548 536 549 0.90 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF749-201 - 778 1.5e-58 192.1 147.2 16 23 0.00022 0.24 11.9 0.1 1 21 556 576 556 577 0.93 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF749-201 - 778 1.5e-58 192.1 147.2 17 23 3.6e-06 0.004 17.5 0.4 1 23 584 606 584 606 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF749-201 - 778 1.5e-58 192.1 147.2 18 23 2.1e-05 0.024 15.1 7.0 1 23 612 634 612 634 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF749-201 - 778 1.5e-58 192.1 147.2 19 23 5.3e-08 5.9e-05 23.3 0.6 1 23 640 662 640 662 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF749-201 - 778 1.5e-58 192.1 147.2 20 23 0.00052 0.58 10.7 2.1 1 21 668 688 668 689 0.95 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF749-201 - 778 1.5e-58 192.1 147.2 21 23 5.5e-05 0.062 13.8 2.4 1 23 696 718 696 718 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF749-201 - 778 1.5e-58 192.1 147.2 22 23 4.7 5.3e+03 -1.8 0.5 5 12 728 735 727 737 0.81 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF749-201 - 778 1.5e-58 192.1 147.2 23 23 0.00026 0.29 11.7 0.1 5 23 752 773 750 773 0.91 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZNF749-201 - 778 9.5e-30 100.7 142.2 1 21 1.6 1.8e+03 0.3 0.2 2 20 85 103 85 107 0.78 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF749-201 - 778 9.5e-30 100.7 142.2 2 21 1.5 1.7e+03 0.3 0.0 1 17 152 168 152 170 0.79 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF749-201 - 778 9.5e-30 100.7 142.2 3 21 0.76 8.5e+02 1.3 0.8 7 23 202 218 198 219 0.87 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF749-201 - 778 9.5e-30 100.7 142.2 4 21 2.4 2.7e+03 -0.3 0.0 5 23 228 246 227 247 0.84 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF749-201 - 778 9.5e-30 100.7 142.2 5 21 0.18 2e+02 3.3 0.1 7 23 258 274 258 275 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF749-201 - 778 9.5e-30 100.7 142.2 6 21 2.9e-06 0.0033 18.1 0.7 1 23 298 320 298 321 0.97 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF749-201 - 778 9.5e-30 100.7 142.2 7 21 0.00018 0.2 12.6 1.3 1 23 326 348 326 349 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF749-201 - 778 9.5e-30 100.7 142.2 8 21 3.7e-05 0.042 14.7 0.5 1 23 354 376 354 377 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF749-201 - 778 9.5e-30 100.7 142.2 9 21 0.00028 0.31 12.0 1.8 1 23 382 404 382 405 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF749-201 - 778 9.5e-30 100.7 142.2 10 21 3.8e-05 0.043 14.7 1.3 1 23 410 432 410 433 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF749-201 - 778 9.5e-30 100.7 142.2 11 21 3.1e-05 0.035 14.9 1.5 1 23 438 460 438 461 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF749-201 - 778 9.5e-30 100.7 142.2 12 21 3.7e-05 0.041 14.7 0.5 1 23 483 505 483 506 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF749-201 - 778 9.5e-30 100.7 142.2 13 21 3.6e-05 0.04 14.8 1.3 1 23 511 533 511 534 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF749-201 - 778 9.5e-30 100.7 142.2 14 21 0.00025 0.28 12.1 0.1 1 21 556 576 556 578 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF749-201 - 778 9.5e-30 100.7 142.2 15 21 0.0003 0.34 11.9 0.4 1 23 584 606 584 607 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF749-201 - 778 9.5e-30 100.7 142.2 16 21 0.00033 0.37 11.7 5.7 1 23 612 634 612 635 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF749-201 - 778 9.5e-30 100.7 142.2 17 21 7.3e-05 0.082 13.8 0.6 1 23 640 662 640 663 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF749-201 - 778 9.5e-30 100.7 142.2 18 21 0.43 4.8e+02 2.1 3.6 1 21 668 688 668 690 0.84 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF749-201 - 778 9.5e-30 100.7 142.2 19 21 0.00075 0.84 10.6 2.1 1 23 696 718 696 719 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF749-201 - 778 9.5e-30 100.7 142.2 20 21 3.7 4.2e+03 -0.9 0.3 5 15 728 738 727 745 0.70 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF749-201 - 778 9.5e-30 100.7 142.2 21 21 0.2 2.3e+02 3.1 0.1 7 23 757 773 751 774 0.80 C2H2-type zinc finger KRAB PF01352.27 42 ZNF749-201 - 778 1.7e-19 69.2 0.1 1 1 3e-22 3.3e-19 68.2 0.1 2 42 8 48 7 48 0.97 KRAB box zf-C2H2_jaz PF12171.8 27 ZNF749-201 - 778 5.9e-09 36.0 60.1 1 13 0.25 2.8e+02 1.9 0.1 9 22 259 272 258 272 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF749-201 - 778 5.9e-09 36.0 60.1 2 13 0.00044 0.49 10.7 0.1 2 24 298 320 297 320 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF749-201 - 778 5.9e-09 36.0 60.1 3 13 0.41 4.6e+02 1.3 0.0 2 21 354 373 353 374 0.81 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF749-201 - 778 5.9e-09 36.0 60.1 4 13 0.00051 0.57 10.5 0.2 2 22 382 402 381 402 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF749-201 - 778 5.9e-09 36.0 60.1 5 13 0.16 1.8e+02 2.6 0.6 2 22 410 430 409 430 0.89 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF749-201 - 778 5.9e-09 36.0 60.1 6 13 0.00097 1.1 9.6 0.7 2 22 438 458 437 458 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF749-201 - 778 5.9e-09 36.0 60.1 7 13 0.0032 3.6 8.0 0.0 2 22 483 503 482 503 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF749-201 - 778 5.9e-09 36.0 60.1 8 13 0.0013 1.5 9.2 0.5 2 22 511 531 510 531 0.95 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF749-201 - 778 5.9e-09 36.0 60.1 9 13 0.0014 1.6 9.1 0.0 2 22 556 576 555 576 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF749-201 - 778 5.9e-09 36.0 60.1 10 13 0.046 52 4.3 0.5 2 21 584 603 583 604 0.90 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF749-201 - 778 5.9e-09 36.0 60.1 11 13 0.017 19 5.7 0.2 2 21 640 659 639 660 0.87 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF749-201 - 778 5.9e-09 36.0 60.1 12 13 6.9 7.7e+03 -2.6 0.3 2 10 668 676 667 686 0.76 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF749-201 - 778 5.9e-09 36.0 60.1 13 13 3 3.4e+03 -1.5 0.8 2 24 696 718 695 718 0.87 Zinc-finger double-stranded RNA-binding zf-C2H2_6 PF13912.6 27 ZNF749-201 - 778 1.8e-08 34.2 117.6 1 18 2.5 2.8e+03 -1.5 0.9 16 24 210 218 203 221 0.84 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF749-201 - 778 1.8e-08 34.2 117.6 2 18 1 1.1e+03 -0.3 0.0 5 13 227 235 227 241 0.79 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF749-201 - 778 1.8e-08 34.2 117.6 3 18 5.7e-06 0.0063 16.5 1.9 2 24 298 320 298 323 0.96 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF749-201 - 778 1.8e-08 34.2 117.6 4 18 0.071 80 3.4 1.0 2 11 326 335 326 349 0.79 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF749-201 - 778 1.8e-08 34.2 117.6 5 18 0.00051 0.57 10.2 0.1 1 11 353 363 353 364 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF749-201 - 778 1.8e-08 34.2 117.6 6 18 0.0043 4.8 7.3 0.9 2 20 382 400 382 406 0.77 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF749-201 - 778 1.8e-08 34.2 117.6 7 18 0.00076 0.85 9.7 0.5 2 12 410 420 409 420 0.92 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF749-201 - 778 1.8e-08 34.2 117.6 8 18 0.0035 4 7.6 0.4 2 12 438 448 438 459 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF749-201 - 778 1.8e-08 34.2 117.6 9 18 0.00018 0.2 11.7 1.1 2 24 483 505 483 508 0.91 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF749-201 - 778 1.8e-08 34.2 117.6 10 18 0.02 22 5.2 0.5 2 12 511 521 511 531 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF749-201 - 778 1.8e-08 34.2 117.6 11 18 0.0003 0.33 11.0 0.8 2 21 556 575 556 576 0.91 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF749-201 - 778 1.8e-08 34.2 117.6 12 18 0.013 15 5.7 1.2 1 11 583 593 583 593 0.86 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF749-201 - 778 1.8e-08 34.2 117.6 13 18 0.074 83 3.4 2.4 2 13 612 623 612 624 0.91 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF749-201 - 778 1.8e-08 34.2 117.6 14 18 0.0029 3.3 7.8 0.5 2 12 640 650 640 663 0.81 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF749-201 - 778 1.8e-08 34.2 117.6 15 18 0.34 3.8e+02 1.3 0.5 2 9 668 675 668 679 0.89 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF749-201 - 778 1.8e-08 34.2 117.6 16 18 0.0044 4.9 7.3 1.7 2 24 696 718 696 721 0.92 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF749-201 - 778 1.8e-08 34.2 117.6 17 18 6 6.7e+03 -2.7 0.1 6 12 728 734 728 735 0.86 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF749-201 - 778 1.8e-08 34.2 117.6 18 18 0.34 3.8e+02 1.2 0.2 2 21 751 770 750 774 0.84 C2H2-type zinc finger # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF749-201.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF749-201.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF749-201.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF749-201.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF749-201.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:13:39 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF749-202.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF749-202.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF749-202.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF749-202.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF749-202.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:13:40 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF749-203.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF749-203.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF749-203.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF749-203.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF749-203.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:13:40 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF749-204.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF749-204.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF749-204.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF749-204.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF749-204.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:13:40 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- SCAN PF02023.17 90 ZNF75A-201 - 241 2.1e-38 130.0 2.6 1 1 2.1e-42 3.8e-38 129.2 2.6 3 89 46 132 44 133 0.96 SCAN domain # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF75A-201.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF75A-201.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF75A-201.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF75A-201.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF75A-201.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:13:41 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF75A-202.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF75A-202.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF75A-202.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF75A-202.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF75A-202.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:13:41 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF75A-203.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF75A-203.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF75A-203.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF75A-203.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF75A-203.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:13:41 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF75A-204.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF75A-204.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF75A-204.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF75A-204.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF75A-204.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:13:42 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-C2H2 PF00096.26 23 ZNF75A-205 - 296 3.7e-30 102.7 46.1 1 5 2.8e-09 1.5e-06 28.3 0.7 1 23 161 183 161 183 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF75A-205 - 296 3.7e-30 102.7 46.1 2 5 2.3e-06 0.0012 19.2 2.1 1 23 189 211 189 211 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF75A-205 - 296 3.7e-30 102.7 46.1 3 5 5.9e-09 3.1e-06 27.3 3.9 1 23 217 239 217 239 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF75A-205 - 296 3.7e-30 102.7 46.1 4 5 3.2e-09 1.7e-06 28.2 6.3 1 23 245 267 245 267 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF75A-205 - 296 3.7e-30 102.7 46.1 5 5 1.3e-07 7e-05 23.1 3.1 1 23 273 295 273 295 0.98 Zinc finger, C2H2 type zf-H2C2_2 PF13465.6 26 ZNF75A-205 - 296 2.7e-27 93.9 52.5 1 6 0.00022 0.12 12.9 3.0 11 24 157 170 148 171 0.77 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF75A-205 - 296 2.7e-27 93.9 52.5 2 6 6e-10 3.1e-07 30.5 1.1 2 24 176 198 175 199 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF75A-205 - 296 2.7e-27 93.9 52.5 3 6 4.4e-08 2.3e-05 24.6 0.3 1 25 203 227 203 228 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF75A-205 - 296 2.7e-27 93.9 52.5 4 6 1.2e-09 6.1e-07 29.6 5.0 2 25 232 255 231 256 0.90 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF75A-205 - 296 2.7e-27 93.9 52.5 5 6 1.9e-09 1e-06 28.9 1.8 1 25 259 283 259 284 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF75A-205 - 296 2.7e-27 93.9 52.5 6 6 4.4 2.3e+03 -0.7 0.7 2 9 288 295 287 296 0.86 Zinc-finger double domain zf-C2H2_4 PF13894.6 24 ZNF75A-205 - 296 1.2e-19 69.2 40.7 1 5 4.9e-06 0.0026 18.5 0.6 1 23 161 183 161 184 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF75A-205 - 296 1.2e-19 69.2 40.7 2 5 5.3e-05 0.028 15.3 1.5 1 23 189 211 189 212 0.90 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF75A-205 - 296 1.2e-19 69.2 40.7 3 5 1.4e-06 0.00072 20.2 2.9 1 23 217 239 217 240 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF75A-205 - 296 1.2e-19 69.2 40.7 4 5 1.6e-05 0.0083 16.9 4.7 1 23 245 267 245 268 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF75A-205 - 296 1.2e-19 69.2 40.7 5 5 9.2e-07 0.00049 20.7 1.8 1 23 273 295 273 296 0.96 C2H2-type zinc finger KRAB PF01352.27 42 ZNF75A-205 - 296 8.3e-19 67.0 0.5 1 1 3.2e-21 1.7e-18 66.0 0.5 9 42 1 34 1 34 0.98 KRAB box zf-C2H2_6 PF13912.6 27 ZNF75A-205 - 296 2.5e-11 43.3 37.2 1 5 3.7e-05 0.02 14.9 0.5 2 24 161 183 161 186 0.85 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF75A-205 - 296 2.5e-11 43.3 37.2 2 5 2.5e-06 0.0013 18.7 0.8 2 25 189 212 189 214 0.95 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF75A-205 - 296 2.5e-11 43.3 37.2 3 5 4.5e-05 0.024 14.7 3.5 2 24 217 239 217 242 0.95 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF75A-205 - 296 2.5e-11 43.3 37.2 4 5 0.00077 0.41 10.7 4.8 2 24 245 267 245 270 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF75A-205 - 296 2.5e-11 43.3 37.2 5 5 0.078 41 4.3 0.6 2 20 273 291 273 296 0.76 C2H2-type zinc finger zf-C2H2_jaz PF12171.8 27 ZNF75A-205 - 296 4.5e-09 36.4 33.0 1 6 0.017 8.9 6.7 0.8 9 27 109 127 108 127 0.89 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF75A-205 - 296 4.5e-09 36.4 33.0 2 6 0.00085 0.45 10.9 0.1 2 22 161 181 160 181 0.90 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF75A-205 - 296 4.5e-09 36.4 33.0 3 6 0.00026 0.14 12.5 1.1 2 25 189 212 188 212 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF75A-205 - 296 4.5e-09 36.4 33.0 4 6 0.047 25 5.3 1.5 2 24 217 239 216 239 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF75A-205 - 296 4.5e-09 36.4 33.0 5 6 0.0085 4.5 7.7 1.9 2 24 245 267 244 267 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF75A-205 - 296 4.5e-09 36.4 33.0 6 6 0.00029 0.15 12.4 0.0 2 22 273 293 272 293 0.94 Zinc-finger double-stranded RNA-binding zf_UBZ PF18439.1 32 ZNF75A-205 - 296 9.1e-07 28.4 16.4 1 5 0.0011 0.57 9.8 0.2 3 21 161 180 159 180 0.86 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF75A-205 - 296 9.1e-07 28.4 16.4 2 5 0.0086 4.5 6.9 0.1 3 18 189 205 187 208 0.74 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF75A-205 - 296 9.1e-07 28.4 16.4 3 5 0.0066 3.5 7.3 0.2 3 21 217 236 215 236 0.86 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF75A-205 - 296 9.1e-07 28.4 16.4 4 5 0.003 1.6 8.4 0.3 3 15 245 257 243 263 0.86 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF75A-205 - 296 9.1e-07 28.4 16.4 5 5 0.052 27 4.4 0.1 3 15 273 285 271 292 0.76 Ubiquitin-Binding Zinc Finger # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF75A-205.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF75A-205.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF75A-205.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF75A-205.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF75A-205.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:13:42 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- SCAN PF02023.17 90 ZNF75A-206 - 153 9.5e-39 131.1 2.6 1 1 6.9e-43 1.2e-38 130.7 2.6 3 89 46 132 44 133 0.96 SCAN domain # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF75A-206.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF75A-206.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF75A-206.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF75A-206.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF75A-206.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:13:42 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF75A-207.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF75A-207.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF75A-207.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF75A-207.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF75A-207.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:13:43 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF75A-208.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF75A-208.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF75A-208.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF75A-208.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF75A-208.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:13:43 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- SCAN PF02023.17 90 ZNF75A-209 - 153 9.5e-39 131.1 2.6 1 1 6.9e-43 1.2e-38 130.7 2.6 3 89 46 132 44 133 0.96 SCAN domain # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF75A-209.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF75A-209.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF75A-209.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF75A-209.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF75A-209.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:13:43 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-C2H2 PF00096.26 23 ZNF75A-210 - 296 3.7e-30 102.7 46.1 1 5 2.8e-09 1.5e-06 28.3 0.7 1 23 161 183 161 183 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF75A-210 - 296 3.7e-30 102.7 46.1 2 5 2.3e-06 0.0012 19.2 2.1 1 23 189 211 189 211 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF75A-210 - 296 3.7e-30 102.7 46.1 3 5 5.9e-09 3.1e-06 27.3 3.9 1 23 217 239 217 239 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF75A-210 - 296 3.7e-30 102.7 46.1 4 5 3.2e-09 1.7e-06 28.2 6.3 1 23 245 267 245 267 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF75A-210 - 296 3.7e-30 102.7 46.1 5 5 1.3e-07 7e-05 23.1 3.1 1 23 273 295 273 295 0.98 Zinc finger, C2H2 type zf-H2C2_2 PF13465.6 26 ZNF75A-210 - 296 2.7e-27 93.9 52.5 1 6 0.00022 0.12 12.9 3.0 11 24 157 170 148 171 0.77 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF75A-210 - 296 2.7e-27 93.9 52.5 2 6 6e-10 3.1e-07 30.5 1.1 2 24 176 198 175 199 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF75A-210 - 296 2.7e-27 93.9 52.5 3 6 4.4e-08 2.3e-05 24.6 0.3 1 25 203 227 203 228 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF75A-210 - 296 2.7e-27 93.9 52.5 4 6 1.2e-09 6.1e-07 29.6 5.0 2 25 232 255 231 256 0.90 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF75A-210 - 296 2.7e-27 93.9 52.5 5 6 1.9e-09 1e-06 28.9 1.8 1 25 259 283 259 284 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF75A-210 - 296 2.7e-27 93.9 52.5 6 6 4.4 2.3e+03 -0.7 0.7 2 9 288 295 287 296 0.86 Zinc-finger double domain zf-C2H2_4 PF13894.6 24 ZNF75A-210 - 296 1.2e-19 69.2 40.7 1 5 4.9e-06 0.0026 18.5 0.6 1 23 161 183 161 184 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF75A-210 - 296 1.2e-19 69.2 40.7 2 5 5.3e-05 0.028 15.3 1.5 1 23 189 211 189 212 0.90 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF75A-210 - 296 1.2e-19 69.2 40.7 3 5 1.4e-06 0.00072 20.2 2.9 1 23 217 239 217 240 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF75A-210 - 296 1.2e-19 69.2 40.7 4 5 1.6e-05 0.0083 16.9 4.7 1 23 245 267 245 268 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF75A-210 - 296 1.2e-19 69.2 40.7 5 5 9.2e-07 0.00049 20.7 1.8 1 23 273 295 273 296 0.96 C2H2-type zinc finger KRAB PF01352.27 42 ZNF75A-210 - 296 8.3e-19 67.0 0.5 1 1 3.2e-21 1.7e-18 66.0 0.5 9 42 1 34 1 34 0.98 KRAB box zf-C2H2_6 PF13912.6 27 ZNF75A-210 - 296 2.5e-11 43.3 37.2 1 5 3.7e-05 0.02 14.9 0.5 2 24 161 183 161 186 0.85 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF75A-210 - 296 2.5e-11 43.3 37.2 2 5 2.5e-06 0.0013 18.7 0.8 2 25 189 212 189 214 0.95 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF75A-210 - 296 2.5e-11 43.3 37.2 3 5 4.5e-05 0.024 14.7 3.5 2 24 217 239 217 242 0.95 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF75A-210 - 296 2.5e-11 43.3 37.2 4 5 0.00077 0.41 10.7 4.8 2 24 245 267 245 270 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF75A-210 - 296 2.5e-11 43.3 37.2 5 5 0.078 41 4.3 0.6 2 20 273 291 273 296 0.76 C2H2-type zinc finger zf-C2H2_jaz PF12171.8 27 ZNF75A-210 - 296 4.5e-09 36.4 33.0 1 6 0.017 8.9 6.7 0.8 9 27 109 127 108 127 0.89 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF75A-210 - 296 4.5e-09 36.4 33.0 2 6 0.00085 0.45 10.9 0.1 2 22 161 181 160 181 0.90 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF75A-210 - 296 4.5e-09 36.4 33.0 3 6 0.00026 0.14 12.5 1.1 2 25 189 212 188 212 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF75A-210 - 296 4.5e-09 36.4 33.0 4 6 0.047 25 5.3 1.5 2 24 217 239 216 239 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF75A-210 - 296 4.5e-09 36.4 33.0 5 6 0.0085 4.5 7.7 1.9 2 24 245 267 244 267 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF75A-210 - 296 4.5e-09 36.4 33.0 6 6 0.00029 0.15 12.4 0.0 2 22 273 293 272 293 0.94 Zinc-finger double-stranded RNA-binding zf_UBZ PF18439.1 32 ZNF75A-210 - 296 9.1e-07 28.4 16.4 1 5 0.0011 0.57 9.8 0.2 3 21 161 180 159 180 0.86 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF75A-210 - 296 9.1e-07 28.4 16.4 2 5 0.0086 4.5 6.9 0.1 3 18 189 205 187 208 0.74 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF75A-210 - 296 9.1e-07 28.4 16.4 3 5 0.0066 3.5 7.3 0.2 3 21 217 236 215 236 0.86 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF75A-210 - 296 9.1e-07 28.4 16.4 4 5 0.003 1.6 8.4 0.3 3 15 245 257 243 263 0.86 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF75A-210 - 296 9.1e-07 28.4 16.4 5 5 0.052 27 4.4 0.1 3 15 273 285 271 292 0.76 Ubiquitin-Binding Zinc Finger # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF75A-210.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF75A-210.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF75A-210.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF75A-210.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF75A-210.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:13:44 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- SCAN PF02023.17 90 ZNF75D-201 - 415 1.1e-37 127.7 3.5 1 1 4.8e-40 2.7e-37 126.5 3.5 1 88 45 132 45 134 0.97 SCAN domain zf-C2H2 PF00096.26 23 ZNF75D-201 - 415 7.7e-27 92.2 47.0 1 5 1.7e-08 9.4e-06 25.8 2.1 1 23 270 292 270 292 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF75D-201 - 415 7.7e-27 92.2 47.0 2 5 1.8e-05 0.01 16.2 2.8 1 23 298 320 298 320 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF75D-201 - 415 7.7e-27 92.2 47.0 3 5 7.1e-08 4e-05 23.8 5.2 1 23 326 348 326 348 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF75D-201 - 415 7.7e-27 92.2 47.0 4 5 2.1e-09 1.2e-06 28.7 2.6 1 23 354 376 354 376 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF75D-201 - 415 7.7e-27 92.2 47.0 5 5 3.3e-07 0.00018 21.8 3.5 1 23 382 404 382 404 0.98 Zinc finger, C2H2 type zf-H2C2_2 PF13465.6 26 ZNF75D-201 - 415 8.9e-26 89.1 57.0 1 6 2.1e-05 0.012 16.0 1.8 10 24 265 279 262 280 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF75D-201 - 415 8.9e-26 89.1 57.0 2 6 4.8e-09 2.7e-06 27.5 1.9 2 24 285 307 284 308 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF75D-201 - 415 8.9e-26 89.1 57.0 3 6 1.9e-07 0.00011 22.5 1.0 1 26 312 337 312 337 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF75D-201 - 415 8.9e-26 89.1 57.0 4 6 2.3e-10 1.3e-07 31.7 1.3 2 24 341 363 340 365 0.90 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF75D-201 - 415 8.9e-26 89.1 57.0 5 6 8.8e-10 4.9e-07 29.9 2.1 1 25 368 392 368 393 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF75D-201 - 415 8.9e-26 89.1 57.0 6 6 5.8 3.3e+03 -1.2 1.5 2 10 397 405 396 407 0.85 Zinc-finger double domain KRAB PF01352.27 42 ZNF75D-201 - 415 3.1e-20 71.6 0.6 1 1 1.2e-22 6.6e-20 70.5 0.6 2 42 140 180 139 180 0.98 KRAB box zf-C2H2_4 PF13894.6 24 ZNF75D-201 - 415 4.8e-16 58.1 41.9 1 5 2.5e-05 0.014 16.2 1.7 1 23 270 292 270 293 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF75D-201 - 415 4.8e-16 58.1 41.9 2 5 0.00016 0.09 13.7 1.9 1 23 298 320 298 321 0.90 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF75D-201 - 415 4.8e-16 58.1 41.9 3 5 8.8e-05 0.049 14.5 3.8 1 23 326 348 326 349 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF75D-201 - 415 4.8e-16 58.1 41.9 4 5 5.3e-06 0.003 18.3 1.7 1 23 354 376 354 377 0.97 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF75D-201 - 415 4.8e-16 58.1 41.9 5 5 4.7e-06 0.0026 18.4 2.7 1 23 382 404 382 405 0.96 C2H2-type zinc finger zf-C2H2_jaz PF12171.8 27 ZNF75D-201 - 415 7.1e-07 29.4 22.6 1 5 0.011 6.1 7.3 0.1 2 20 270 288 269 288 0.82 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF75D-201 - 415 7.1e-07 29.4 22.6 2 5 0.011 6.3 7.2 1.0 2 21 298 317 297 321 0.88 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF75D-201 - 415 7.1e-07 29.4 22.6 3 5 0.037 21 5.6 0.5 2 22 326 346 325 346 0.91 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF75D-201 - 415 7.1e-07 29.4 22.6 4 5 0.002 1.1 9.6 1.0 2 24 354 376 353 376 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF75D-201 - 415 7.1e-07 29.4 22.6 5 5 0.00022 0.12 12.7 0.1 2 22 382 402 381 402 0.94 Zinc-finger double-stranded RNA-binding # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF75D-201.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF75D-201.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF75D-201.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF75D-201.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF75D-201.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:13:44 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- SCAN PF02023.17 90 ZNF75D-202 - 510 1.5e-37 127.2 3.5 1 1 6.6e-40 3.8e-37 126.0 3.5 1 88 45 132 45 134 0.97 SCAN domain zf-H2C2_2 PF13465.6 26 ZNF75D-202 - 510 6e-27 92.8 51.2 1 6 2.6e-05 0.015 15.7 1.8 10 24 360 374 357 375 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF75D-202 - 510 6e-27 92.8 51.2 2 6 6e-09 3.5e-06 27.2 1.9 2 24 380 402 379 403 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF75D-202 - 510 6e-27 92.8 51.2 3 6 2.4e-07 0.00014 22.1 1.0 1 26 407 432 407 432 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF75D-202 - 510 6e-27 92.8 51.2 4 6 2.9e-10 1.7e-07 31.4 1.3 2 24 436 458 435 460 0.90 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF75D-202 - 510 6e-27 92.8 51.2 5 6 1.1e-09 6.3e-07 29.5 2.1 1 25 463 487 463 488 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF75D-202 - 510 6e-27 92.8 51.2 6 6 7.1 4.1e+03 -1.5 1.5 2 10 492 500 491 502 0.85 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZNF75D-202 - 510 2.7e-26 90.5 47.0 1 5 2.1e-08 1.2e-05 25.5 2.1 1 23 365 387 365 387 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF75D-202 - 510 2.7e-26 90.5 47.0 2 5 2.3e-05 0.013 15.9 2.8 1 23 393 415 393 415 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF75D-202 - 510 2.7e-26 90.5 47.0 3 5 8.8e-08 5.1e-05 23.5 5.2 1 23 421 443 421 443 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF75D-202 - 510 2.7e-26 90.5 47.0 4 5 2.6e-09 1.5e-06 28.3 2.6 1 23 449 471 449 471 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF75D-202 - 510 2.7e-26 90.5 47.0 5 5 4.1e-07 0.00023 21.4 3.5 1 23 477 499 477 499 0.98 Zinc finger, C2H2 type KRAB PF01352.27 42 ZNF75D-202 - 510 4e-20 71.2 0.6 1 1 1.5e-22 8.7e-20 70.1 0.6 2 42 235 275 234 275 0.98 KRAB box zf-C2H2_4 PF13894.6 24 ZNF75D-202 - 510 1.4e-15 56.6 41.9 1 5 3.2e-05 0.018 15.8 1.7 1 23 365 387 365 388 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF75D-202 - 510 1.4e-15 56.6 41.9 2 5 0.0002 0.12 13.3 1.9 1 23 393 415 393 416 0.90 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF75D-202 - 510 1.4e-15 56.6 41.9 3 5 0.00011 0.063 14.1 3.8 1 23 421 443 421 444 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF75D-202 - 510 1.4e-15 56.6 41.9 4 5 6.7e-06 0.0039 17.9 1.7 1 23 449 471 449 472 0.97 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF75D-202 - 510 1.4e-15 56.6 41.9 5 5 5.8e-06 0.0034 18.1 2.7 1 23 477 499 477 500 0.96 C2H2-type zinc finger # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF75D-202.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF75D-202.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF75D-202.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF75D-202.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF75D-202.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:13:45 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZNF75D-203 - 247 2.9e-29 100.2 50.6 1 6 1.4e-05 0.0063 16.9 1.8 10 24 97 111 94 112 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF75D-203 - 247 2.9e-29 100.2 50.6 2 6 3.2e-09 1.4e-06 28.5 1.9 2 24 117 139 116 140 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF75D-203 - 247 2.9e-29 100.2 50.6 3 6 1.3e-07 5.5e-05 23.4 1.0 1 26 144 169 144 169 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF75D-203 - 247 2.9e-29 100.2 50.6 4 6 1.5e-10 6.7e-08 32.6 1.3 2 24 173 195 172 197 0.90 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF75D-203 - 247 2.9e-29 100.2 50.6 5 6 5.8e-10 2.5e-07 30.8 2.1 1 25 200 224 200 225 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF75D-203 - 247 2.9e-29 100.2 50.6 6 6 2.8 1.2e+03 0.2 1.1 2 10 229 237 228 240 0.86 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZNF75D-203 - 247 3.4e-28 96.5 47.0 1 5 1.1e-08 4.8e-06 26.7 2.1 1 23 102 124 102 124 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF75D-203 - 247 3.4e-28 96.5 47.0 2 5 1.2e-05 0.0053 17.2 2.8 1 23 130 152 130 152 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF75D-203 - 247 3.4e-28 96.5 47.0 3 5 4.7e-08 2e-05 24.7 5.2 1 23 158 180 158 180 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF75D-203 - 247 3.4e-28 96.5 47.0 4 5 1.4e-09 6e-07 29.6 2.6 1 23 186 208 186 208 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF75D-203 - 247 3.4e-28 96.5 47.0 5 5 2.2e-07 9.4e-05 22.7 3.5 1 23 214 236 214 236 0.98 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZNF75D-203 - 247 2.6e-17 62.0 41.9 1 5 1.6e-05 0.0072 17.1 1.7 1 23 102 124 102 125 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF75D-203 - 247 2.6e-17 62.0 41.9 2 5 0.00011 0.046 14.6 1.9 1 23 130 152 130 153 0.90 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF75D-203 - 247 2.6e-17 62.0 41.9 3 5 5.7e-05 0.025 15.4 3.8 1 23 158 180 158 181 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF75D-203 - 247 2.6e-17 62.0 41.9 4 5 3.5e-06 0.0015 19.2 1.7 1 23 186 208 186 209 0.97 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF75D-203 - 247 2.6e-17 62.0 41.9 5 5 3e-06 0.0013 19.4 2.7 1 23 214 236 214 237 0.96 C2H2-type zinc finger zf-C2H2_jaz PF12171.8 27 ZNF75D-203 - 247 3.5e-08 33.5 22.6 1 5 0.0074 3.3 8.1 0.1 2 20 102 120 101 120 0.83 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF75D-203 - 247 3.5e-08 33.5 22.6 2 5 0.0075 3.3 8.1 1.0 2 21 130 149 129 153 0.88 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF75D-203 - 247 3.5e-08 33.5 22.6 3 5 0.025 11 6.5 0.5 2 22 158 178 157 178 0.91 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF75D-203 - 247 3.5e-08 33.5 22.6 4 5 0.0013 0.58 10.5 1.0 2 24 186 208 185 208 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF75D-203 - 247 3.5e-08 33.5 22.6 5 5 0.00015 0.063 13.6 0.1 2 22 214 234 213 234 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_6 PF13912.6 27 ZNF75D-203 - 247 8.6e-08 32.0 40.0 1 5 5.9e-05 0.026 14.5 1.1 2 21 102 121 102 126 0.84 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF75D-203 - 247 8.6e-08 32.0 40.0 2 5 0.00087 0.38 10.8 0.7 2 20 130 148 130 154 0.83 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF75D-203 - 247 8.6e-08 32.0 40.0 3 5 0.00074 0.32 11.0 2.8 2 24 158 180 158 183 0.90 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF75D-203 - 247 8.6e-08 32.0 40.0 4 5 0.0014 0.61 10.2 3.7 2 24 186 208 186 211 0.83 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF75D-203 - 247 8.6e-08 32.0 40.0 5 5 0.018 7.9 6.6 2.5 2 26 214 238 214 239 0.92 C2H2-type zinc finger # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF75D-203.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF75D-203.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF75D-203.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF75D-203.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF75D-203.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:13:45 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF75D-204.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF75D-204.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF75D-204.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF75D-204.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF75D-204.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:13:45 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZNF761-201 - 692 3.3e-117 378.2 183.4 1 20 0.074 63 4.2 0.1 8 25 154 171 151 172 0.88 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF761-201 - 692 3.3e-117 378.2 183.4 2 20 4.9e-05 0.042 14.3 0.2 2 25 176 198 176 199 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF761-201 - 692 3.3e-117 378.2 183.4 3 20 9.3e-09 7.9e-06 26.1 4.0 5 25 206 226 202 227 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF761-201 - 692 3.3e-117 378.2 183.4 4 20 4e-09 3.4e-06 27.2 4.7 5 24 234 253 230 254 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF761-201 - 692 3.3e-117 378.2 183.4 5 20 6.7e-10 5.7e-07 29.7 0.7 2 25 259 282 258 283 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF761-201 - 692 3.3e-117 378.2 183.4 6 20 1.6e-10 1.4e-07 31.6 4.3 2 26 287 311 286 311 0.97 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF761-201 - 692 3.3e-117 378.2 183.4 7 20 5.9e-08 5e-05 23.5 7.0 5 26 318 339 314 339 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF761-201 - 692 3.3e-117 378.2 183.4 8 20 2e-09 1.7e-06 28.2 2.6 5 24 346 365 342 366 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF761-201 - 692 3.3e-117 378.2 183.4 9 20 7e-07 0.0006 20.1 0.8 2 25 371 394 370 395 0.90 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF761-201 - 692 3.3e-117 378.2 183.4 10 20 7.3e-09 6.3e-06 26.4 2.6 5 24 402 421 398 422 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF761-201 - 692 3.3e-117 378.2 183.4 11 20 1.1e-12 9e-10 38.5 1.4 1 25 426 450 426 451 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF761-201 - 692 3.3e-117 378.2 183.4 12 20 1.1e-06 0.00097 19.5 4.7 5 25 458 478 454 478 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF761-201 - 692 3.3e-117 378.2 183.4 13 20 5.7e-09 4.9e-06 26.7 3.5 5 25 486 506 482 507 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF761-201 - 692 3.3e-117 378.2 183.4 14 20 3.7e-07 0.00031 21.0 0.2 2 24 511 533 510 535 0.88 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF761-201 - 692 3.3e-117 378.2 183.4 15 20 1.4e-09 1.2e-06 28.6 0.6 1 25 538 562 538 563 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF761-201 - 692 3.3e-117 378.2 183.4 16 20 9.6e-10 8.2e-07 29.2 2.9 5 24 570 589 566 590 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF761-201 - 692 3.3e-117 378.2 183.4 17 20 3.5e-11 3e-08 33.7 0.8 1 25 594 618 594 619 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF761-201 - 692 3.3e-117 378.2 183.4 18 20 3.3e-08 2.8e-05 24.3 3.3 5 25 626 646 626 647 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF761-201 - 692 3.3e-117 378.2 183.4 19 20 3.9e-08 3.3e-05 24.1 4.9 5 25 654 674 652 675 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF761-201 - 692 3.3e-117 378.2 183.4 20 20 0.035 29 5.3 0.1 2 14 679 691 678 692 0.82 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZNF761-201 - 692 6.4e-68 221.6 216.6 1 19 0.0007 0.6 10.7 0.1 7 23 167 183 161 183 0.84 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF761-201 - 692 6.4e-68 221.6 216.6 2 19 0.004 3.4 8.3 5.4 1 21 188 208 188 210 0.92 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF761-201 - 692 6.4e-68 221.6 216.6 3 19 2.3e-06 0.002 18.5 4.6 1 23 216 238 216 238 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF761-201 - 692 6.4e-68 221.6 216.6 4 19 5.5e-05 0.047 14.2 1.3 1 23 244 266 244 266 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF761-201 - 692 6.4e-68 221.6 216.6 5 19 3.3e-07 0.00028 21.1 4.0 1 23 272 294 272 294 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF761-201 - 692 6.4e-68 221.6 216.6 6 19 2.2e-05 0.018 15.4 9.0 1 23 300 322 300 322 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF761-201 - 692 6.4e-68 221.6 216.6 7 19 4.5e-06 0.0039 17.6 7.2 1 23 328 350 328 350 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF761-201 - 692 6.4e-68 221.6 216.6 8 19 7.6e-07 0.00065 20.0 1.0 1 23 356 378 356 378 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF761-201 - 692 6.4e-68 221.6 216.6 9 19 1.2e-06 0.00099 19.4 5.9 1 23 384 406 384 406 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF761-201 - 692 6.4e-68 221.6 216.6 10 19 3.2e-09 2.7e-06 27.5 1.5 1 23 412 434 412 434 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF761-201 - 692 6.4e-68 221.6 216.6 11 19 5.6e-06 0.0048 17.3 7.6 1 23 440 462 440 462 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF761-201 - 692 6.4e-68 221.6 216.6 12 19 7.5e-05 0.064 13.7 4.1 1 23 468 490 468 490 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF761-201 - 692 6.4e-68 221.6 216.6 13 19 3.2e-08 2.7e-05 24.3 2.7 1 23 496 518 496 518 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF761-201 - 692 6.4e-68 221.6 216.6 14 19 0.002 1.7 9.3 0.1 3 23 526 546 524 546 0.83 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF761-201 - 692 6.4e-68 221.6 216.6 15 19 1.5e-06 0.0013 19.1 5.0 1 23 552 574 552 574 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF761-201 - 692 6.4e-68 221.6 216.6 16 19 4.7e-08 4e-05 23.8 0.3 1 23 580 602 580 602 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF761-201 - 692 6.4e-68 221.6 216.6 17 19 3.5e-05 0.03 14.8 7.5 1 23 608 630 608 630 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF761-201 - 692 6.4e-68 221.6 216.6 18 19 1.1e-05 0.0095 16.3 5.4 1 23 636 658 636 658 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF761-201 - 692 6.4e-68 221.6 216.6 19 19 2.7e-07 0.00023 21.4 4.7 1 23 664 686 664 686 0.98 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZNF761-201 - 692 3.7e-32 108.2 189.3 1 19 0.22 1.9e+02 3.3 0.1 2 23 162 183 161 184 0.75 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF761-201 - 692 3.7e-32 108.2 189.3 2 19 0.013 11 7.1 4.8 1 21 188 208 188 210 0.89 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF761-201 - 692 3.7e-32 108.2 189.3 3 19 0.00017 0.14 13.0 3.5 1 23 216 238 216 239 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF761-201 - 692 3.7e-32 108.2 189.3 4 19 0.0014 1.2 10.2 1.1 1 23 244 266 244 267 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF761-201 - 692 3.7e-32 108.2 189.3 5 19 8.2e-05 0.07 14.0 2.5 1 23 272 294 272 295 0.89 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF761-201 - 692 3.7e-32 108.2 189.3 6 19 0.0035 3 8.9 7.2 1 23 300 322 300 323 0.90 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF761-201 - 692 3.7e-32 108.2 189.3 7 19 0.00075 0.64 11.0 5.7 1 23 328 350 328 351 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF761-201 - 692 3.7e-32 108.2 189.3 8 19 0.0025 2.1 9.4 0.8 1 23 356 378 356 379 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF761-201 - 692 3.7e-32 108.2 189.3 9 19 5.1e-05 0.043 14.7 4.2 1 23 384 406 384 407 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF761-201 - 692 3.7e-32 108.2 189.3 10 19 5.2e-05 0.045 14.6 1.1 1 23 412 434 412 435 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF761-201 - 692 3.7e-32 108.2 189.3 11 19 0.00064 0.55 11.2 5.8 1 23 440 462 440 463 0.88 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF761-201 - 692 3.7e-32 108.2 189.3 12 19 0.0013 1.1 10.3 3.7 1 23 468 490 468 491 0.89 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF761-201 - 692 3.7e-32 108.2 189.3 13 19 3.3e-06 0.0028 18.3 1.8 1 23 496 518 496 519 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF761-201 - 692 3.7e-32 108.2 189.3 14 19 3.4 2.9e+03 -0.4 0.1 2 23 525 546 524 547 0.77 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF761-201 - 692 3.7e-32 108.2 189.3 15 19 0.00012 0.11 13.4 3.7 1 23 552 574 552 575 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF761-201 - 692 3.7e-32 108.2 189.3 16 19 0.00017 0.14 13.1 0.3 1 23 580 602 580 603 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF761-201 - 692 3.7e-32 108.2 189.3 17 19 0.0013 1.1 10.3 5.8 1 23 608 630 608 631 0.87 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF761-201 - 692 3.7e-32 108.2 189.3 18 19 0.00025 0.21 12.5 4.5 1 23 636 658 636 659 0.90 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF761-201 - 692 3.7e-32 108.2 189.3 19 19 6.9e-05 0.059 14.2 3.5 1 23 664 686 664 687 0.95 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF761-201 - 692 4.2e-22 77.6 167.1 1 17 9.4e-05 0.08 13.0 4.7 2 24 188 210 187 213 0.95 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF761-201 - 692 4.2e-22 77.6 167.1 2 17 0.00024 0.2 11.7 3.7 2 24 216 238 216 241 0.92 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF761-201 - 692 4.2e-22 77.6 167.1 3 17 0.049 42 4.3 1.8 2 12 244 254 244 254 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF761-201 - 692 4.2e-22 77.6 167.1 4 17 0.00078 0.66 10.0 0.9 2 12 272 282 272 283 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF761-201 - 692 4.2e-22 77.6 167.1 5 17 0.0074 6.3 6.9 4.7 2 12 300 310 300 323 0.83 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF761-201 - 692 4.2e-22 77.6 167.1 6 17 0.0028 2.4 8.3 5.6 2 24 328 350 328 353 0.88 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF761-201 - 692 4.2e-22 77.6 167.1 7 17 0.13 1.1e+02 2.9 1.0 2 11 356 365 356 366 0.90 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF761-201 - 692 4.2e-22 77.6 167.1 8 17 1.2e-06 0.001 19.0 3.3 1 24 383 406 383 409 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF761-201 - 692 4.2e-22 77.6 167.1 9 17 0.0033 2.8 8.0 0.6 2 24 412 434 412 437 0.86 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF761-201 - 692 4.2e-22 77.6 167.1 10 17 0.0007 0.6 10.2 1.4 2 12 440 450 440 452 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF761-201 - 692 4.2e-22 77.6 167.1 11 17 0.00024 0.2 11.7 2.7 1 24 467 490 467 493 0.83 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF761-201 - 692 4.2e-22 77.6 167.1 12 17 0.00011 0.097 12.7 1.8 2 24 496 518 496 521 0.83 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF761-201 - 692 4.2e-22 77.6 167.1 13 17 4.4e-05 0.038 14.0 3.5 2 24 552 574 552 577 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF761-201 - 692 4.2e-22 77.6 167.1 14 17 7.5e-05 0.064 13.3 0.3 2 24 580 602 580 605 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF761-201 - 692 4.2e-22 77.6 167.1 15 17 0.00064 0.54 10.3 1.2 2 12 608 618 608 619 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF761-201 - 692 4.2e-22 77.6 167.1 16 17 0.022 19 5.4 3.5 2 13 636 647 636 659 0.80 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF761-201 - 692 4.2e-22 77.6 167.1 17 17 0.00059 0.5 10.4 3.7 2 24 664 686 664 689 0.89 C2H2-type zinc finger Zn-ribbon_8 PF09723.10 40 ZNF761-201 - 692 1.3e-14 54.0 122.0 1 17 0.024 21 5.4 0.4 6 34 161 195 160 200 0.55 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF761-201 - 692 1.3e-14 54.0 122.0 2 17 0.052 44 4.3 1.6 6 19 188 201 187 213 0.71 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF761-201 - 692 1.3e-14 54.0 122.0 3 17 0.0016 1.3 9.1 0.5 6 19 216 229 215 237 0.83 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF761-201 - 692 1.3e-14 54.0 122.0 4 17 0.00012 0.099 12.8 5.4 6 38 244 283 243 285 0.86 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF761-201 - 692 1.3e-14 54.0 122.0 5 17 0.0024 2.1 8.6 0.7 6 17 300 311 299 322 0.83 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF761-201 - 692 1.3e-14 54.0 122.0 6 17 0.021 18 5.5 7.9 6 33 328 362 327 364 0.74 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF761-201 - 692 1.3e-14 54.0 122.0 7 17 0.00084 0.71 10.0 6.2 6 38 356 395 355 397 0.79 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF761-201 - 692 1.3e-14 54.0 122.0 8 17 0.0011 0.92 9.7 0.5 6 19 384 397 383 404 0.83 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF761-201 - 692 1.3e-14 54.0 122.0 9 17 0.00033 0.28 11.3 6.1 6 38 412 451 411 453 0.88 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF761-201 - 692 1.3e-14 54.0 122.0 10 17 0.00014 0.12 12.5 6.1 6 37 468 506 467 509 0.77 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF761-201 - 692 1.3e-14 54.0 122.0 11 17 0.0034 2.9 8.1 2.1 6 17 496 510 494 528 0.73 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF761-201 - 692 1.3e-14 54.0 122.0 12 17 0.001 0.86 9.8 2.1 6 38 524 563 523 565 0.74 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF761-201 - 692 1.3e-14 54.0 122.0 13 17 0.0016 1.4 9.1 0.5 6 19 552 565 549 571 0.85 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF761-201 - 692 1.3e-14 54.0 122.0 14 17 0.0013 1.1 9.4 6.4 6 38 580 619 579 621 0.84 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF761-201 - 692 1.3e-14 54.0 122.0 15 17 0.0012 0.99 9.6 7.2 6 36 608 645 606 648 0.79 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF761-201 - 692 1.3e-14 54.0 122.0 16 17 0.0049 4.2 7.6 0.9 6 17 636 647 634 656 0.84 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF761-201 - 692 1.3e-14 54.0 122.0 17 17 0.0032 2.7 8.2 0.9 6 16 664 674 662 683 0.84 Zinc ribbon domain zf-C2H2_11 PF16622.5 29 ZNF761-201 - 692 8.2e-14 51.1 111.2 1 18 0.043 36 4.2 0.1 3 26 159 182 158 183 0.87 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF761-201 - 692 8.2e-14 51.1 111.2 2 18 9.9 8.5e+03 -3.4 1.2 6 14 189 197 188 208 0.70 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF761-201 - 692 8.2e-14 51.1 111.2 3 18 0.00072 0.61 9.9 1.5 4 25 215 236 213 238 0.90 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF761-201 - 692 8.2e-14 51.1 111.2 4 18 0.011 9.1 6.1 0.1 5 26 244 265 241 266 0.92 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF761-201 - 692 8.2e-14 51.1 111.2 5 18 0.0091 7.7 6.4 0.3 5 25 272 292 268 294 0.89 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF761-201 - 692 8.2e-14 51.1 111.2 6 18 0.011 9.5 6.1 2.9 5 25 300 320 297 322 0.89 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF761-201 - 692 8.2e-14 51.1 111.2 7 18 0.0016 1.3 8.8 2.3 5 25 328 348 325 350 0.92 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF761-201 - 692 8.2e-14 51.1 111.2 8 18 1.7 1.5e+03 -0.9 0.0 5 15 356 366 354 377 0.80 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF761-201 - 692 8.2e-14 51.1 111.2 9 18 0.00026 0.22 11.3 1.5 2 25 381 404 380 405 0.92 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF761-201 - 692 8.2e-14 51.1 111.2 10 18 0.0071 6.1 6.7 0.0 5 26 412 433 409 434 0.93 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF761-201 - 692 8.2e-14 51.1 111.2 11 18 0.078 66 3.4 1.2 5 20 440 455 437 461 0.78 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF761-201 - 692 8.2e-14 51.1 111.2 12 18 0.00032 0.28 11.0 1.3 4 25 467 488 465 490 0.91 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF761-201 - 692 8.2e-14 51.1 111.2 13 18 4.1e-06 0.0035 17.1 0.3 5 25 496 516 493 518 0.93 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF761-201 - 692 8.2e-14 51.1 111.2 14 18 0.00044 0.38 10.6 1.1 2 25 549 572 548 574 0.90 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF761-201 - 692 8.2e-14 51.1 111.2 15 18 0.36 3.1e+02 1.2 0.0 5 26 580 601 577 602 0.90 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF761-201 - 692 8.2e-14 51.1 111.2 16 18 0.081 69 3.3 0.1 5 15 608 618 605 621 0.88 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF761-201 - 692 8.2e-14 51.1 111.2 17 18 0.0019 1.7 8.5 1.1 5 23 636 654 633 657 0.87 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF761-201 - 692 8.2e-14 51.1 111.2 18 18 0.012 10 6.0 1.1 5 25 664 684 661 686 0.89 zinc-finger C2H2-type XPA_N PF01286.18 32 ZNF761-201 - 692 1.2e-11 44.4 88.0 1 18 2.9 2.5e+03 -1.4 0.0 4 18 163 177 162 180 0.85 XPA protein N-terminal XPA_N PF01286.18 32 ZNF761-201 - 692 1.2e-11 44.4 88.0 2 18 0.17 1.4e+02 2.6 0.2 19 25 187 193 183 199 0.57 XPA protein N-terminal XPA_N PF01286.18 32 ZNF761-201 - 692 1.2e-11 44.4 88.0 3 18 0.0084 7.2 6.8 0.2 3 13 217 227 215 231 0.88 XPA protein N-terminal XPA_N PF01286.18 32 ZNF761-201 - 692 1.2e-11 44.4 88.0 4 18 0.011 9.2 6.4 0.5 3 12 245 254 243 258 0.91 XPA protein N-terminal XPA_N PF01286.18 32 ZNF761-201 - 692 1.2e-11 44.4 88.0 5 18 0.0098 8.4 6.5 0.1 3 12 273 282 271 292 0.83 XPA protein N-terminal XPA_N PF01286.18 32 ZNF761-201 - 692 1.2e-11 44.4 88.0 6 18 0.014 12 6.0 0.2 3 12 301 310 299 315 0.89 XPA protein N-terminal XPA_N PF01286.18 32 ZNF761-201 - 692 1.2e-11 44.4 88.0 7 18 0.015 13 5.9 0.2 3 12 329 338 327 342 0.90 XPA protein N-terminal XPA_N PF01286.18 32 ZNF761-201 - 692 1.2e-11 44.4 88.0 8 18 0.15 1.2e+02 2.8 0.3 3 10 357 364 355 366 0.86 XPA protein N-terminal XPA_N PF01286.18 32 ZNF761-201 - 692 1.2e-11 44.4 88.0 9 18 0.012 10 6.2 0.1 3 12 385 394 383 397 0.87 XPA protein N-terminal XPA_N PF01286.18 32 ZNF761-201 - 692 1.2e-11 44.4 88.0 10 18 0.023 19 5.4 0.7 3 11 413 421 411 423 0.90 XPA protein N-terminal XPA_N PF01286.18 32 ZNF761-201 - 692 1.2e-11 44.4 88.0 11 18 0.0044 3.7 7.7 0.5 3 16 441 455 439 461 0.80 XPA protein N-terminal XPA_N PF01286.18 32 ZNF761-201 - 692 1.2e-11 44.4 88.0 12 18 0.017 15 5.7 0.1 3 11 469 477 467 479 0.89 XPA protein N-terminal XPA_N PF01286.18 32 ZNF761-201 - 692 1.2e-11 44.4 88.0 13 18 0.0047 4 7.6 0.2 3 13 497 507 495 512 0.87 XPA protein N-terminal XPA_N PF01286.18 32 ZNF761-201 - 692 1.2e-11 44.4 88.0 14 18 0.013 11 6.2 0.1 3 12 553 562 551 565 0.88 XPA protein N-terminal XPA_N PF01286.18 32 ZNF761-201 - 692 1.2e-11 44.4 88.0 15 18 0.015 13 5.9 0.3 3 11 581 589 579 591 0.89 XPA protein N-terminal XPA_N PF01286.18 32 ZNF761-201 - 692 1.2e-11 44.4 88.0 16 18 0.015 13 5.9 0.7 3 12 609 618 607 626 0.84 XPA protein N-terminal XPA_N PF01286.18 32 ZNF761-201 - 692 1.2e-11 44.4 88.0 17 18 0.014 12 6.1 0.2 3 12 637 646 635 651 0.89 XPA protein N-terminal XPA_N PF01286.18 32 ZNF761-201 - 692 1.2e-11 44.4 88.0 18 18 0.013 11 6.1 0.3 3 12 665 674 663 677 0.89 XPA protein N-terminal zf_UBZ PF18439.1 32 ZNF761-201 - 692 5.8e-08 32.2 104.4 1 17 0.036 31 4.3 0.3 1 20 186 206 186 207 0.79 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF761-201 - 692 5.8e-08 32.2 104.4 2 17 0.00096 0.82 9.3 0.5 3 20 216 234 214 235 0.89 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF761-201 - 692 5.8e-08 32.2 104.4 3 17 0.023 19 4.9 0.2 3 13 244 254 242 260 0.81 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF761-201 - 692 5.8e-08 32.2 104.4 4 17 0.031 27 4.5 0.2 3 12 272 281 270 288 0.85 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF761-201 - 692 5.8e-08 32.2 104.4 5 17 0.0098 8.4 6.1 2.2 3 20 300 318 298 319 0.87 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF761-201 - 692 5.8e-08 32.2 104.4 6 17 0.0052 4.4 7.0 1.2 3 20 328 346 326 347 0.87 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF761-201 - 692 5.8e-08 32.2 104.4 7 17 0.061 52 3.6 0.3 3 11 356 364 354 369 0.85 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF761-201 - 692 5.8e-08 32.2 104.4 8 17 0.0013 1.1 8.9 0.3 2 20 383 402 382 403 0.88 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF761-201 - 692 5.8e-08 32.2 104.4 9 17 0.033 28 4.4 0.2 3 12 412 421 410 430 0.85 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF761-201 - 692 5.8e-08 32.2 104.4 10 17 0.019 16 5.2 0.9 3 14 440 451 438 459 0.81 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF761-201 - 692 5.8e-08 32.2 104.4 11 17 0.012 11 5.8 0.5 3 14 468 479 466 487 0.76 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF761-201 - 692 5.8e-08 32.2 104.4 12 17 0.009 7.7 6.2 0.2 3 13 496 506 494 514 0.85 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF761-201 - 692 5.8e-08 32.2 104.4 13 17 0.0017 1.5 8.5 0.4 3 20 552 570 550 571 0.88 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF761-201 - 692 5.8e-08 32.2 104.4 14 17 0.024 20 4.9 0.1 3 13 580 590 578 598 0.82 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF761-201 - 692 5.8e-08 32.2 104.4 15 17 0.027 23 4.7 0.9 3 13 608 618 606 626 0.88 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF761-201 - 692 5.8e-08 32.2 104.4 16 17 0.013 11 5.7 1.3 3 20 636 654 634 655 0.80 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF761-201 - 692 5.8e-08 32.2 104.4 17 17 0.0052 4.4 7.0 0.7 3 20 664 682 662 683 0.84 Ubiquitin-Binding Zinc Finger # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF761-201.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF761-201.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF761-201.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF761-201.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF761-201.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:13:46 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZNF761-202 - 746 2.9e-116 375.2 184.0 1 20 0.085 69 4.1 0.1 8 25 208 225 205 226 0.88 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF761-202 - 746 2.9e-116 375.2 184.0 2 20 5.7e-05 0.046 14.2 0.2 2 25 230 252 230 253 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF761-202 - 746 2.9e-116 375.2 184.0 3 20 1.1e-08 8.6e-06 25.9 4.0 5 25 260 280 256 281 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF761-202 - 746 2.9e-116 375.2 184.0 4 20 4.5e-09 3.7e-06 27.1 4.7 5 24 288 307 284 308 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF761-202 - 746 2.9e-116 375.2 184.0 5 20 7.7e-10 6.3e-07 29.5 0.7 2 25 313 336 312 337 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF761-202 - 746 2.9e-116 375.2 184.0 6 20 1.8e-10 1.5e-07 31.5 4.3 2 26 341 365 340 365 0.97 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF761-202 - 746 2.9e-116 375.2 184.0 7 20 6.7e-08 5.5e-05 23.4 7.0 5 26 372 393 368 393 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF761-202 - 746 2.9e-116 375.2 184.0 8 20 2.3e-09 1.8e-06 28.1 2.6 5 24 400 419 396 420 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF761-202 - 746 2.9e-116 375.2 184.0 9 20 8e-07 0.00065 20.0 0.8 2 25 425 448 424 449 0.90 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF761-202 - 746 2.9e-116 375.2 184.0 10 20 8.4e-09 6.8e-06 26.3 2.6 5 24 456 475 452 476 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF761-202 - 746 2.9e-116 375.2 184.0 11 20 1.2e-12 9.8e-10 38.4 1.4 1 25 480 504 480 505 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF761-202 - 746 2.9e-116 375.2 184.0 12 20 1.3e-06 0.0011 19.4 4.7 5 25 512 532 508 532 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF761-202 - 746 2.9e-116 375.2 184.0 13 20 6.6e-09 5.3e-06 26.6 3.5 5 25 540 560 536 561 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF761-202 - 746 2.9e-116 375.2 184.0 14 20 4.2e-07 0.00034 20.9 0.2 2 24 565 587 564 589 0.88 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF761-202 - 746 2.9e-116 375.2 184.0 15 20 1.6e-09 1.3e-06 28.5 0.6 1 25 592 616 592 617 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF761-202 - 746 2.9e-116 375.2 184.0 16 20 1.1e-09 8.9e-07 29.1 2.9 5 24 624 643 620 644 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF761-202 - 746 2.9e-116 375.2 184.0 17 20 4e-11 3.3e-08 33.6 0.8 1 25 648 672 648 673 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF761-202 - 746 2.9e-116 375.2 184.0 18 20 3.7e-08 3e-05 24.2 3.3 5 25 680 700 680 701 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF761-202 - 746 2.9e-116 375.2 184.0 19 20 4.4e-08 3.6e-05 24.0 4.9 5 25 708 728 706 729 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF761-202 - 746 2.9e-116 375.2 184.0 20 20 0.039 32 5.2 0.1 2 14 733 745 732 746 0.82 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZNF761-202 - 746 1.1e-69 227.2 208.8 1 19 0.0008 0.65 10.6 0.1 7 23 221 237 215 237 0.84 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF761-202 - 746 1.1e-69 227.2 208.8 2 19 0.0046 3.7 8.2 5.4 1 21 242 262 242 264 0.92 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF761-202 - 746 1.1e-69 227.2 208.8 3 19 2.7e-06 0.0022 18.4 4.6 1 23 270 292 270 292 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF761-202 - 746 1.1e-69 227.2 208.8 4 19 6.3e-05 0.051 14.0 1.3 1 23 298 320 298 320 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF761-202 - 746 1.1e-69 227.2 208.8 5 19 3.8e-07 0.00031 21.0 4.0 1 23 326 348 326 348 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF761-202 - 746 1.1e-69 227.2 208.8 6 19 2.5e-05 0.02 15.3 9.0 1 23 354 376 354 376 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF761-202 - 746 1.1e-69 227.2 208.8 7 19 5.2e-06 0.0042 17.5 7.2 1 23 382 404 382 404 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF761-202 - 746 1.1e-69 227.2 208.8 8 19 8.7e-07 0.0007 19.9 1.0 1 23 410 432 410 432 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF761-202 - 746 1.1e-69 227.2 208.8 9 19 1.3e-06 0.0011 19.3 5.9 1 23 438 460 438 460 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF761-202 - 746 1.1e-69 227.2 208.8 10 19 3.6e-09 3e-06 27.4 1.5 1 23 466 488 466 488 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF761-202 - 746 1.1e-69 227.2 208.8 11 19 6.4e-06 0.0052 17.2 7.6 1 23 494 516 494 516 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF761-202 - 746 1.1e-69 227.2 208.8 12 19 8.5e-05 0.069 13.6 4.1 1 23 522 544 522 544 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF761-202 - 746 1.1e-69 227.2 208.8 13 19 3.7e-08 3e-05 24.2 2.7 1 23 550 572 550 572 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF761-202 - 746 1.1e-69 227.2 208.8 14 19 0.0022 1.8 9.2 0.1 3 23 580 600 578 600 0.83 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF761-202 - 746 1.1e-69 227.2 208.8 15 19 1.7e-06 0.0014 19.0 5.0 1 23 606 628 606 628 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF761-202 - 746 1.1e-69 227.2 208.8 16 19 5.4e-08 4.4e-05 23.7 0.3 1 23 634 656 634 656 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF761-202 - 746 1.1e-69 227.2 208.8 17 19 4e-05 0.032 14.7 7.5 1 23 662 684 662 684 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF761-202 - 746 1.1e-69 227.2 208.8 18 19 1.3e-05 0.01 16.2 5.4 1 23 690 712 690 712 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF761-202 - 746 1.1e-69 227.2 208.8 19 19 3.1e-07 0.00025 21.3 4.7 1 23 718 740 718 740 0.98 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZNF761-202 - 746 1.8e-31 106.1 189.3 1 19 0.26 2.1e+02 3.2 0.1 2 23 216 237 215 238 0.75 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF761-202 - 746 1.8e-31 106.1 189.3 2 19 0.015 12 7.0 4.8 1 21 242 262 242 264 0.89 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF761-202 - 746 1.8e-31 106.1 189.3 3 19 0.00019 0.16 12.9 3.5 1 23 270 292 270 293 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF761-202 - 746 1.8e-31 106.1 189.3 4 19 0.0016 1.3 10.1 1.1 1 23 298 320 298 321 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF761-202 - 746 1.8e-31 106.1 189.3 5 19 9.4e-05 0.077 13.9 2.5 1 23 326 348 326 349 0.89 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF761-202 - 746 1.8e-31 106.1 189.3 6 19 0.0041 3.3 8.8 7.2 1 23 354 376 354 377 0.90 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF761-202 - 746 1.8e-31 106.1 189.3 7 19 0.00086 0.7 10.9 5.7 1 23 382 404 382 405 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF761-202 - 746 1.8e-31 106.1 189.3 8 19 0.0029 2.3 9.3 0.8 1 23 410 432 410 433 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF761-202 - 746 1.8e-31 106.1 189.3 9 19 5.8e-05 0.047 14.5 4.2 1 23 438 460 438 461 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF761-202 - 746 1.8e-31 106.1 189.3 10 19 6e-05 0.049 14.5 1.1 1 23 466 488 466 489 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF761-202 - 746 1.8e-31 106.1 189.3 11 19 0.00074 0.6 11.1 5.8 1 23 494 516 494 517 0.88 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF761-202 - 746 1.8e-31 106.1 189.3 12 19 0.0015 1.2 10.2 3.7 1 23 522 544 522 545 0.89 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF761-202 - 746 1.8e-31 106.1 189.3 13 19 3.8e-06 0.0031 18.2 1.8 1 23 550 572 550 573 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF761-202 - 746 1.8e-31 106.1 189.3 14 19 3.9 3.2e+03 -0.5 0.1 2 23 579 600 578 601 0.77 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF761-202 - 746 1.8e-31 106.1 189.3 15 19 0.00014 0.12 13.3 3.7 1 23 606 628 606 629 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF761-202 - 746 1.8e-31 106.1 189.3 16 19 0.00019 0.15 12.9 0.3 1 23 634 656 634 657 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF761-202 - 746 1.8e-31 106.1 189.3 17 19 0.0015 1.2 10.1 5.8 1 23 662 684 662 685 0.87 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF761-202 - 746 1.8e-31 106.1 189.3 18 19 0.00028 0.23 12.4 4.5 1 23 690 712 690 713 0.90 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF761-202 - 746 1.8e-31 106.1 189.3 19 19 7.9e-05 0.064 14.1 3.5 1 23 718 740 718 741 0.95 C2H2-type zinc finger KRAB PF01352.27 42 ZNF761-202 - 746 3.7e-27 93.7 0.1 1 1 8.5e-30 6.9e-27 92.8 0.1 2 42 8 48 7 48 0.98 KRAB box zf-C2H2_6 PF13912.6 27 ZNF761-202 - 746 1.9e-21 75.5 167.1 1 17 0.00011 0.087 12.8 4.7 2 24 242 264 241 267 0.95 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF761-202 - 746 1.9e-21 75.5 167.1 2 17 0.00027 0.22 11.5 3.7 2 24 270 292 270 295 0.92 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF761-202 - 746 1.9e-21 75.5 167.1 3 17 0.056 45 4.2 1.8 2 12 298 308 298 308 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF761-202 - 746 1.9e-21 75.5 167.1 4 17 0.00088 0.72 9.9 0.9 2 12 326 336 326 337 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF761-202 - 746 1.9e-21 75.5 167.1 5 17 0.0084 6.9 6.8 4.7 2 12 354 364 354 377 0.83 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF761-202 - 746 1.9e-21 75.5 167.1 6 17 0.0032 2.6 8.1 5.6 2 24 382 404 382 407 0.88 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF761-202 - 746 1.9e-21 75.5 167.1 7 17 0.15 1.2e+02 2.8 1.0 2 11 410 419 410 420 0.90 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF761-202 - 746 1.9e-21 75.5 167.1 8 17 1.4e-06 0.0011 18.9 3.3 1 24 437 460 437 463 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF761-202 - 746 1.9e-21 75.5 167.1 9 17 0.0038 3.1 7.9 0.6 2 24 466 488 466 491 0.86 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF761-202 - 746 1.9e-21 75.5 167.1 10 17 0.0008 0.65 10.1 1.4 2 12 494 504 494 506 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF761-202 - 746 1.9e-21 75.5 167.1 11 17 0.00027 0.22 11.6 2.7 1 24 521 544 521 547 0.83 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF761-202 - 746 1.9e-21 75.5 167.1 12 17 0.00013 0.11 12.6 1.8 2 24 550 572 550 575 0.83 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF761-202 - 746 1.9e-21 75.5 167.1 13 17 5e-05 0.041 13.9 3.5 2 24 606 628 606 631 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF761-202 - 746 1.9e-21 75.5 167.1 14 17 8.6e-05 0.07 13.2 0.3 2 24 634 656 634 659 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF761-202 - 746 1.9e-21 75.5 167.1 15 17 0.00073 0.59 10.2 1.2 2 12 662 672 662 673 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF761-202 - 746 1.9e-21 75.5 167.1 16 17 0.025 20 5.3 3.5 2 13 690 701 690 713 0.80 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF761-202 - 746 1.9e-21 75.5 167.1 17 17 0.00067 0.55 10.3 3.7 2 24 718 740 718 743 0.89 C2H2-type zinc finger Zn-ribbon_8 PF09723.10 40 ZNF761-202 - 746 6.3e-14 51.8 122.6 1 17 0.022 18 5.5 0.4 6 34 215 249 214 256 0.54 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF761-202 - 746 6.3e-14 51.8 122.6 2 17 0.047 38 4.5 1.3 6 19 242 255 241 267 0.71 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF761-202 - 746 6.3e-14 51.8 122.6 3 17 0.0018 1.5 9.0 0.5 6 19 270 283 269 291 0.83 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF761-202 - 746 6.3e-14 51.8 122.6 4 17 0.00013 0.1 12.7 5.3 6 38 298 337 297 339 0.86 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF761-202 - 746 6.3e-14 51.8 122.6 5 17 0.0028 2.2 8.4 0.7 6 17 354 365 353 376 0.83 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF761-202 - 746 6.3e-14 51.8 122.6 6 17 0.026 21 5.3 8.2 6 33 382 416 381 419 0.75 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF761-202 - 746 6.3e-14 51.8 122.6 7 17 0.0011 0.91 9.7 6.5 6 38 410 449 409 451 0.79 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF761-202 - 746 6.3e-14 51.8 122.6 8 17 0.0012 1 9.5 0.5 6 19 438 451 437 458 0.83 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF761-202 - 746 6.3e-14 51.8 122.6 9 17 0.00044 0.36 11.0 6.3 6 38 466 505 465 507 0.88 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF761-202 - 746 6.3e-14 51.8 122.6 10 17 0.00015 0.12 12.5 6.0 6 37 522 560 521 563 0.77 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF761-202 - 746 6.3e-14 51.8 122.6 11 17 0.004 3.3 7.9 2.1 6 17 550 564 549 582 0.72 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF761-202 - 746 6.3e-14 51.8 122.6 12 17 0.0013 1.1 9.5 2.3 6 38 578 617 577 619 0.74 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF761-202 - 746 6.3e-14 51.8 122.6 13 17 0.0017 1.4 9.1 0.4 6 19 606 619 605 625 0.84 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF761-202 - 746 6.3e-14 51.8 122.6 14 17 0.0018 1.4 9.0 6.6 6 38 634 673 633 675 0.84 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF761-202 - 746 6.3e-14 51.8 122.6 15 17 0.0015 1.2 9.3 7.3 6 36 662 699 661 702 0.79 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF761-202 - 746 6.3e-14 51.8 122.6 16 17 0.0057 4.6 7.4 0.9 6 17 690 701 689 710 0.83 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF761-202 - 746 6.3e-14 51.8 122.6 17 17 0.0038 3.1 8.0 1.0 6 16 718 728 715 737 0.85 Zinc ribbon domain zf-C2H2_11 PF16622.5 29 ZNF761-202 - 746 3.3e-13 49.1 111.2 1 17 0.049 40 4.1 0.1 3 26 213 236 212 237 0.87 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF761-202 - 746 3.3e-13 49.1 111.2 2 17 0.00082 0.67 9.8 1.5 4 25 269 290 267 292 0.90 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF761-202 - 746 3.3e-13 49.1 111.2 3 17 0.012 9.9 6.0 0.1 5 26 298 319 295 320 0.92 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF761-202 - 746 3.3e-13 49.1 111.2 4 17 0.01 8.4 6.2 0.3 5 25 326 346 322 348 0.89 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF761-202 - 746 3.3e-13 49.1 111.2 5 17 0.013 10 6.0 2.9 5 25 354 374 351 376 0.89 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF761-202 - 746 3.3e-13 49.1 111.2 6 17 0.0018 1.4 8.7 2.3 5 25 382 402 379 404 0.92 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF761-202 - 746 3.3e-13 49.1 111.2 7 17 2 1.6e+03 -1.0 0.0 5 15 410 420 408 431 0.80 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF761-202 - 746 3.3e-13 49.1 111.2 8 17 0.00029 0.24 11.2 1.5 2 25 435 458 434 459 0.92 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF761-202 - 746 3.3e-13 49.1 111.2 9 17 0.0081 6.6 6.6 0.0 5 26 466 487 463 488 0.93 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF761-202 - 746 3.3e-13 49.1 111.2 10 17 0.088 72 3.3 1.2 5 20 494 509 491 515 0.78 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF761-202 - 746 3.3e-13 49.1 111.2 11 17 0.00037 0.3 10.9 1.3 4 25 521 542 519 544 0.91 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF761-202 - 746 3.3e-13 49.1 111.2 12 17 4.7e-06 0.0038 16.9 0.3 5 25 550 570 547 572 0.93 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF761-202 - 746 3.3e-13 49.1 111.2 13 17 0.0005 0.41 10.4 1.1 2 25 603 626 602 628 0.90 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF761-202 - 746 3.3e-13 49.1 111.2 14 17 0.42 3.4e+02 1.1 0.0 5 26 634 655 631 656 0.90 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF761-202 - 746 3.3e-13 49.1 111.2 15 17 0.092 75 3.2 0.1 5 15 662 672 659 675 0.88 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF761-202 - 746 3.3e-13 49.1 111.2 16 17 0.0022 1.8 8.4 1.1 5 23 690 708 687 711 0.87 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF761-202 - 746 3.3e-13 49.1 111.2 17 17 0.014 11 5.9 1.1 5 25 718 738 715 740 0.89 zinc-finger C2H2-type XPA_N PF01286.18 32 ZNF761-202 - 746 4.9e-11 42.5 88.0 1 18 3.3 2.7e+03 -1.5 0.0 4 18 217 231 216 234 0.85 XPA protein N-terminal XPA_N PF01286.18 32 ZNF761-202 - 746 4.9e-11 42.5 88.0 2 18 0.19 1.5e+02 2.5 0.2 19 25 241 247 237 253 0.57 XPA protein N-terminal XPA_N PF01286.18 32 ZNF761-202 - 746 4.9e-11 42.5 88.0 3 18 0.0096 7.8 6.6 0.2 3 13 271 281 269 285 0.88 XPA protein N-terminal XPA_N PF01286.18 32 ZNF761-202 - 746 4.9e-11 42.5 88.0 4 18 0.012 10 6.3 0.5 3 12 299 308 297 312 0.91 XPA protein N-terminal XPA_N PF01286.18 32 ZNF761-202 - 746 4.9e-11 42.5 88.0 5 18 0.011 9.1 6.4 0.1 3 12 327 336 325 346 0.83 XPA protein N-terminal XPA_N PF01286.18 32 ZNF761-202 - 746 4.9e-11 42.5 88.0 6 18 0.016 13 5.9 0.2 3 12 355 364 353 369 0.89 XPA protein N-terminal XPA_N PF01286.18 32 ZNF761-202 - 746 4.9e-11 42.5 88.0 7 18 0.018 14 5.8 0.2 3 12 383 392 381 396 0.90 XPA protein N-terminal XPA_N PF01286.18 32 ZNF761-202 - 746 4.9e-11 42.5 88.0 8 18 0.16 1.3e+02 2.7 0.3 3 10 411 418 409 420 0.86 XPA protein N-terminal XPA_N PF01286.18 32 ZNF761-202 - 746 4.9e-11 42.5 88.0 9 18 0.014 11 6.1 0.1 3 12 439 448 437 451 0.87 XPA protein N-terminal XPA_N PF01286.18 32 ZNF761-202 - 746 4.9e-11 42.5 88.0 10 18 0.026 21 5.3 0.7 3 11 467 475 465 477 0.90 XPA protein N-terminal XPA_N PF01286.18 32 ZNF761-202 - 746 4.9e-11 42.5 88.0 11 18 0.005 4.1 7.5 0.5 3 16 495 509 493 515 0.80 XPA protein N-terminal XPA_N PF01286.18 32 ZNF761-202 - 746 4.9e-11 42.5 88.0 12 18 0.02 16 5.6 0.1 3 11 523 531 521 533 0.89 XPA protein N-terminal XPA_N PF01286.18 32 ZNF761-202 - 746 4.9e-11 42.5 88.0 13 18 0.0053 4.3 7.5 0.2 3 13 551 561 549 566 0.87 XPA protein N-terminal XPA_N PF01286.18 32 ZNF761-202 - 746 4.9e-11 42.5 88.0 14 18 0.015 12 6.0 0.1 3 12 607 616 605 619 0.88 XPA protein N-terminal XPA_N PF01286.18 32 ZNF761-202 - 746 4.9e-11 42.5 88.0 15 18 0.018 14 5.8 0.3 3 11 635 643 633 645 0.89 XPA protein N-terminal XPA_N PF01286.18 32 ZNF761-202 - 746 4.9e-11 42.5 88.0 16 18 0.017 14 5.8 0.7 3 12 663 672 661 680 0.84 XPA protein N-terminal XPA_N PF01286.18 32 ZNF761-202 - 746 4.9e-11 42.5 88.0 17 18 0.015 13 6.0 0.2 3 12 691 700 689 705 0.89 XPA protein N-terminal XPA_N PF01286.18 32 ZNF761-202 - 746 4.9e-11 42.5 88.0 18 18 0.015 12 6.0 0.3 3 12 719 728 717 731 0.89 XPA protein N-terminal zf_UBZ PF18439.1 32 ZNF761-202 - 746 2.4e-07 30.2 104.4 1 17 0.041 34 4.2 0.3 1 20 240 260 240 261 0.79 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF761-202 - 746 2.4e-07 30.2 104.4 2 17 0.0011 0.89 9.2 0.5 3 20 270 288 268 289 0.89 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF761-202 - 746 2.4e-07 30.2 104.4 3 17 0.026 21 4.8 0.2 3 13 298 308 296 314 0.81 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF761-202 - 746 2.4e-07 30.2 104.4 4 17 0.036 29 4.4 0.2 3 12 326 335 324 342 0.85 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF761-202 - 746 2.4e-07 30.2 104.4 5 17 0.011 9.1 6.0 2.2 3 20 354 372 352 373 0.87 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF761-202 - 746 2.4e-07 30.2 104.4 6 17 0.0059 4.8 6.9 1.2 3 20 382 400 380 401 0.87 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF761-202 - 746 2.4e-07 30.2 104.4 7 17 0.069 56 3.4 0.3 3 11 410 418 408 423 0.85 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF761-202 - 746 2.4e-07 30.2 104.4 8 17 0.0015 1.2 8.7 0.3 2 20 437 456 436 457 0.88 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF761-202 - 746 2.4e-07 30.2 104.4 9 17 0.037 30 4.3 0.2 3 12 466 475 464 484 0.86 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF761-202 - 746 2.4e-07 30.2 104.4 10 17 0.022 18 5.1 0.9 3 14 494 505 492 513 0.81 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF761-202 - 746 2.4e-07 30.2 104.4 11 17 0.014 12 5.6 0.5 3 14 522 533 520 541 0.76 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF761-202 - 746 2.4e-07 30.2 104.4 12 17 0.01 8.3 6.1 0.2 3 13 550 560 548 568 0.85 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF761-202 - 746 2.4e-07 30.2 104.4 13 17 0.002 1.6 8.4 0.4 3 20 606 624 604 625 0.88 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF761-202 - 746 2.4e-07 30.2 104.4 14 17 0.027 22 4.8 0.1 3 13 634 644 632 652 0.82 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF761-202 - 746 2.4e-07 30.2 104.4 15 17 0.031 25 4.6 0.9 3 13 662 672 660 680 0.88 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF761-202 - 746 2.4e-07 30.2 104.4 16 17 0.015 12 5.6 1.3 3 20 690 708 688 709 0.80 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF761-202 - 746 2.4e-07 30.2 104.4 17 17 0.0059 4.8 6.9 0.7 3 20 718 736 716 737 0.84 Ubiquitin-Binding Zinc Finger # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF761-202.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF761-202.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF761-202.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF761-202.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF761-202.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:13:47 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZNF761-203 - 746 2.9e-116 375.2 184.0 1 20 0.085 69 4.1 0.1 8 25 208 225 205 226 0.88 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF761-203 - 746 2.9e-116 375.2 184.0 2 20 5.7e-05 0.046 14.2 0.2 2 25 230 252 230 253 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF761-203 - 746 2.9e-116 375.2 184.0 3 20 1.1e-08 8.6e-06 25.9 4.0 5 25 260 280 256 281 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF761-203 - 746 2.9e-116 375.2 184.0 4 20 4.5e-09 3.7e-06 27.1 4.7 5 24 288 307 284 308 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF761-203 - 746 2.9e-116 375.2 184.0 5 20 7.7e-10 6.3e-07 29.5 0.7 2 25 313 336 312 337 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF761-203 - 746 2.9e-116 375.2 184.0 6 20 1.8e-10 1.5e-07 31.5 4.3 2 26 341 365 340 365 0.97 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF761-203 - 746 2.9e-116 375.2 184.0 7 20 6.7e-08 5.5e-05 23.4 7.0 5 26 372 393 368 393 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF761-203 - 746 2.9e-116 375.2 184.0 8 20 2.3e-09 1.8e-06 28.1 2.6 5 24 400 419 396 420 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF761-203 - 746 2.9e-116 375.2 184.0 9 20 8e-07 0.00065 20.0 0.8 2 25 425 448 424 449 0.90 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF761-203 - 746 2.9e-116 375.2 184.0 10 20 8.4e-09 6.8e-06 26.3 2.6 5 24 456 475 452 476 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF761-203 - 746 2.9e-116 375.2 184.0 11 20 1.2e-12 9.8e-10 38.4 1.4 1 25 480 504 480 505 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF761-203 - 746 2.9e-116 375.2 184.0 12 20 1.3e-06 0.0011 19.4 4.7 5 25 512 532 508 532 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF761-203 - 746 2.9e-116 375.2 184.0 13 20 6.6e-09 5.3e-06 26.6 3.5 5 25 540 560 536 561 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF761-203 - 746 2.9e-116 375.2 184.0 14 20 4.2e-07 0.00034 20.9 0.2 2 24 565 587 564 589 0.88 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF761-203 - 746 2.9e-116 375.2 184.0 15 20 1.6e-09 1.3e-06 28.5 0.6 1 25 592 616 592 617 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF761-203 - 746 2.9e-116 375.2 184.0 16 20 1.1e-09 8.9e-07 29.1 2.9 5 24 624 643 620 644 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF761-203 - 746 2.9e-116 375.2 184.0 17 20 4e-11 3.3e-08 33.6 0.8 1 25 648 672 648 673 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF761-203 - 746 2.9e-116 375.2 184.0 18 20 3.7e-08 3e-05 24.2 3.3 5 25 680 700 680 701 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF761-203 - 746 2.9e-116 375.2 184.0 19 20 4.4e-08 3.6e-05 24.0 4.9 5 25 708 728 706 729 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF761-203 - 746 2.9e-116 375.2 184.0 20 20 0.039 32 5.2 0.1 2 14 733 745 732 746 0.82 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZNF761-203 - 746 1.1e-69 227.2 208.8 1 19 0.0008 0.65 10.6 0.1 7 23 221 237 215 237 0.84 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF761-203 - 746 1.1e-69 227.2 208.8 2 19 0.0046 3.7 8.2 5.4 1 21 242 262 242 264 0.92 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF761-203 - 746 1.1e-69 227.2 208.8 3 19 2.7e-06 0.0022 18.4 4.6 1 23 270 292 270 292 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF761-203 - 746 1.1e-69 227.2 208.8 4 19 6.3e-05 0.051 14.0 1.3 1 23 298 320 298 320 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF761-203 - 746 1.1e-69 227.2 208.8 5 19 3.8e-07 0.00031 21.0 4.0 1 23 326 348 326 348 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF761-203 - 746 1.1e-69 227.2 208.8 6 19 2.5e-05 0.02 15.3 9.0 1 23 354 376 354 376 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF761-203 - 746 1.1e-69 227.2 208.8 7 19 5.2e-06 0.0042 17.5 7.2 1 23 382 404 382 404 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF761-203 - 746 1.1e-69 227.2 208.8 8 19 8.7e-07 0.0007 19.9 1.0 1 23 410 432 410 432 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF761-203 - 746 1.1e-69 227.2 208.8 9 19 1.3e-06 0.0011 19.3 5.9 1 23 438 460 438 460 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF761-203 - 746 1.1e-69 227.2 208.8 10 19 3.6e-09 3e-06 27.4 1.5 1 23 466 488 466 488 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF761-203 - 746 1.1e-69 227.2 208.8 11 19 6.4e-06 0.0052 17.2 7.6 1 23 494 516 494 516 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF761-203 - 746 1.1e-69 227.2 208.8 12 19 8.5e-05 0.069 13.6 4.1 1 23 522 544 522 544 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF761-203 - 746 1.1e-69 227.2 208.8 13 19 3.7e-08 3e-05 24.2 2.7 1 23 550 572 550 572 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF761-203 - 746 1.1e-69 227.2 208.8 14 19 0.0022 1.8 9.2 0.1 3 23 580 600 578 600 0.83 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF761-203 - 746 1.1e-69 227.2 208.8 15 19 1.7e-06 0.0014 19.0 5.0 1 23 606 628 606 628 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF761-203 - 746 1.1e-69 227.2 208.8 16 19 5.4e-08 4.4e-05 23.7 0.3 1 23 634 656 634 656 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF761-203 - 746 1.1e-69 227.2 208.8 17 19 4e-05 0.032 14.7 7.5 1 23 662 684 662 684 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF761-203 - 746 1.1e-69 227.2 208.8 18 19 1.3e-05 0.01 16.2 5.4 1 23 690 712 690 712 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF761-203 - 746 1.1e-69 227.2 208.8 19 19 3.1e-07 0.00025 21.3 4.7 1 23 718 740 718 740 0.98 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZNF761-203 - 746 1.8e-31 106.1 189.3 1 19 0.26 2.1e+02 3.2 0.1 2 23 216 237 215 238 0.75 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF761-203 - 746 1.8e-31 106.1 189.3 2 19 0.015 12 7.0 4.8 1 21 242 262 242 264 0.89 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF761-203 - 746 1.8e-31 106.1 189.3 3 19 0.00019 0.16 12.9 3.5 1 23 270 292 270 293 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF761-203 - 746 1.8e-31 106.1 189.3 4 19 0.0016 1.3 10.1 1.1 1 23 298 320 298 321 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF761-203 - 746 1.8e-31 106.1 189.3 5 19 9.4e-05 0.077 13.9 2.5 1 23 326 348 326 349 0.89 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF761-203 - 746 1.8e-31 106.1 189.3 6 19 0.0041 3.3 8.8 7.2 1 23 354 376 354 377 0.90 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF761-203 - 746 1.8e-31 106.1 189.3 7 19 0.00086 0.7 10.9 5.7 1 23 382 404 382 405 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF761-203 - 746 1.8e-31 106.1 189.3 8 19 0.0029 2.3 9.3 0.8 1 23 410 432 410 433 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF761-203 - 746 1.8e-31 106.1 189.3 9 19 5.8e-05 0.047 14.5 4.2 1 23 438 460 438 461 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF761-203 - 746 1.8e-31 106.1 189.3 10 19 6e-05 0.049 14.5 1.1 1 23 466 488 466 489 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF761-203 - 746 1.8e-31 106.1 189.3 11 19 0.00074 0.6 11.1 5.8 1 23 494 516 494 517 0.88 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF761-203 - 746 1.8e-31 106.1 189.3 12 19 0.0015 1.2 10.2 3.7 1 23 522 544 522 545 0.89 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF761-203 - 746 1.8e-31 106.1 189.3 13 19 3.8e-06 0.0031 18.2 1.8 1 23 550 572 550 573 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF761-203 - 746 1.8e-31 106.1 189.3 14 19 3.9 3.2e+03 -0.5 0.1 2 23 579 600 578 601 0.77 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF761-203 - 746 1.8e-31 106.1 189.3 15 19 0.00014 0.12 13.3 3.7 1 23 606 628 606 629 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF761-203 - 746 1.8e-31 106.1 189.3 16 19 0.00019 0.15 12.9 0.3 1 23 634 656 634 657 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF761-203 - 746 1.8e-31 106.1 189.3 17 19 0.0015 1.2 10.1 5.8 1 23 662 684 662 685 0.87 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF761-203 - 746 1.8e-31 106.1 189.3 18 19 0.00028 0.23 12.4 4.5 1 23 690 712 690 713 0.90 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF761-203 - 746 1.8e-31 106.1 189.3 19 19 7.9e-05 0.064 14.1 3.5 1 23 718 740 718 741 0.95 C2H2-type zinc finger KRAB PF01352.27 42 ZNF761-203 - 746 3.7e-27 93.7 0.1 1 1 8.5e-30 6.9e-27 92.8 0.1 2 42 8 48 7 48 0.98 KRAB box zf-C2H2_6 PF13912.6 27 ZNF761-203 - 746 1.9e-21 75.5 167.1 1 17 0.00011 0.087 12.8 4.7 2 24 242 264 241 267 0.95 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF761-203 - 746 1.9e-21 75.5 167.1 2 17 0.00027 0.22 11.5 3.7 2 24 270 292 270 295 0.92 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF761-203 - 746 1.9e-21 75.5 167.1 3 17 0.056 45 4.2 1.8 2 12 298 308 298 308 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF761-203 - 746 1.9e-21 75.5 167.1 4 17 0.00088 0.72 9.9 0.9 2 12 326 336 326 337 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF761-203 - 746 1.9e-21 75.5 167.1 5 17 0.0084 6.9 6.8 4.7 2 12 354 364 354 377 0.83 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF761-203 - 746 1.9e-21 75.5 167.1 6 17 0.0032 2.6 8.1 5.6 2 24 382 404 382 407 0.88 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF761-203 - 746 1.9e-21 75.5 167.1 7 17 0.15 1.2e+02 2.8 1.0 2 11 410 419 410 420 0.90 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF761-203 - 746 1.9e-21 75.5 167.1 8 17 1.4e-06 0.0011 18.9 3.3 1 24 437 460 437 463 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF761-203 - 746 1.9e-21 75.5 167.1 9 17 0.0038 3.1 7.9 0.6 2 24 466 488 466 491 0.86 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF761-203 - 746 1.9e-21 75.5 167.1 10 17 0.0008 0.65 10.1 1.4 2 12 494 504 494 506 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF761-203 - 746 1.9e-21 75.5 167.1 11 17 0.00027 0.22 11.6 2.7 1 24 521 544 521 547 0.83 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF761-203 - 746 1.9e-21 75.5 167.1 12 17 0.00013 0.11 12.6 1.8 2 24 550 572 550 575 0.83 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF761-203 - 746 1.9e-21 75.5 167.1 13 17 5e-05 0.041 13.9 3.5 2 24 606 628 606 631 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF761-203 - 746 1.9e-21 75.5 167.1 14 17 8.6e-05 0.07 13.2 0.3 2 24 634 656 634 659 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF761-203 - 746 1.9e-21 75.5 167.1 15 17 0.00073 0.59 10.2 1.2 2 12 662 672 662 673 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF761-203 - 746 1.9e-21 75.5 167.1 16 17 0.025 20 5.3 3.5 2 13 690 701 690 713 0.80 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF761-203 - 746 1.9e-21 75.5 167.1 17 17 0.00067 0.55 10.3 3.7 2 24 718 740 718 743 0.89 C2H2-type zinc finger Zn-ribbon_8 PF09723.10 40 ZNF761-203 - 746 6.3e-14 51.8 122.6 1 17 0.022 18 5.5 0.4 6 34 215 249 214 256 0.54 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF761-203 - 746 6.3e-14 51.8 122.6 2 17 0.047 38 4.5 1.3 6 19 242 255 241 267 0.71 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF761-203 - 746 6.3e-14 51.8 122.6 3 17 0.0018 1.5 9.0 0.5 6 19 270 283 269 291 0.83 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF761-203 - 746 6.3e-14 51.8 122.6 4 17 0.00013 0.1 12.7 5.3 6 38 298 337 297 339 0.86 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF761-203 - 746 6.3e-14 51.8 122.6 5 17 0.0028 2.2 8.4 0.7 6 17 354 365 353 376 0.83 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF761-203 - 746 6.3e-14 51.8 122.6 6 17 0.026 21 5.3 8.2 6 33 382 416 381 419 0.75 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF761-203 - 746 6.3e-14 51.8 122.6 7 17 0.0011 0.91 9.7 6.5 6 38 410 449 409 451 0.79 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF761-203 - 746 6.3e-14 51.8 122.6 8 17 0.0012 1 9.5 0.5 6 19 438 451 437 458 0.83 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF761-203 - 746 6.3e-14 51.8 122.6 9 17 0.00044 0.36 11.0 6.3 6 38 466 505 465 507 0.88 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF761-203 - 746 6.3e-14 51.8 122.6 10 17 0.00015 0.12 12.5 6.0 6 37 522 560 521 563 0.77 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF761-203 - 746 6.3e-14 51.8 122.6 11 17 0.004 3.3 7.9 2.1 6 17 550 564 549 582 0.72 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF761-203 - 746 6.3e-14 51.8 122.6 12 17 0.0013 1.1 9.5 2.3 6 38 578 617 577 619 0.74 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF761-203 - 746 6.3e-14 51.8 122.6 13 17 0.0017 1.4 9.1 0.4 6 19 606 619 605 625 0.84 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF761-203 - 746 6.3e-14 51.8 122.6 14 17 0.0018 1.4 9.0 6.6 6 38 634 673 633 675 0.84 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF761-203 - 746 6.3e-14 51.8 122.6 15 17 0.0015 1.2 9.3 7.3 6 36 662 699 661 702 0.79 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF761-203 - 746 6.3e-14 51.8 122.6 16 17 0.0057 4.6 7.4 0.9 6 17 690 701 689 710 0.83 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF761-203 - 746 6.3e-14 51.8 122.6 17 17 0.0038 3.1 8.0 1.0 6 16 718 728 715 737 0.85 Zinc ribbon domain zf-C2H2_11 PF16622.5 29 ZNF761-203 - 746 3.3e-13 49.1 111.2 1 17 0.049 40 4.1 0.1 3 26 213 236 212 237 0.87 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF761-203 - 746 3.3e-13 49.1 111.2 2 17 0.00082 0.67 9.8 1.5 4 25 269 290 267 292 0.90 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF761-203 - 746 3.3e-13 49.1 111.2 3 17 0.012 9.9 6.0 0.1 5 26 298 319 295 320 0.92 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF761-203 - 746 3.3e-13 49.1 111.2 4 17 0.01 8.4 6.2 0.3 5 25 326 346 322 348 0.89 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF761-203 - 746 3.3e-13 49.1 111.2 5 17 0.013 10 6.0 2.9 5 25 354 374 351 376 0.89 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF761-203 - 746 3.3e-13 49.1 111.2 6 17 0.0018 1.4 8.7 2.3 5 25 382 402 379 404 0.92 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF761-203 - 746 3.3e-13 49.1 111.2 7 17 2 1.6e+03 -1.0 0.0 5 15 410 420 408 431 0.80 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF761-203 - 746 3.3e-13 49.1 111.2 8 17 0.00029 0.24 11.2 1.5 2 25 435 458 434 459 0.92 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF761-203 - 746 3.3e-13 49.1 111.2 9 17 0.0081 6.6 6.6 0.0 5 26 466 487 463 488 0.93 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF761-203 - 746 3.3e-13 49.1 111.2 10 17 0.088 72 3.3 1.2 5 20 494 509 491 515 0.78 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF761-203 - 746 3.3e-13 49.1 111.2 11 17 0.00037 0.3 10.9 1.3 4 25 521 542 519 544 0.91 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF761-203 - 746 3.3e-13 49.1 111.2 12 17 4.7e-06 0.0038 16.9 0.3 5 25 550 570 547 572 0.93 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF761-203 - 746 3.3e-13 49.1 111.2 13 17 0.0005 0.41 10.4 1.1 2 25 603 626 602 628 0.90 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF761-203 - 746 3.3e-13 49.1 111.2 14 17 0.42 3.4e+02 1.1 0.0 5 26 634 655 631 656 0.90 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF761-203 - 746 3.3e-13 49.1 111.2 15 17 0.092 75 3.2 0.1 5 15 662 672 659 675 0.88 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF761-203 - 746 3.3e-13 49.1 111.2 16 17 0.0022 1.8 8.4 1.1 5 23 690 708 687 711 0.87 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF761-203 - 746 3.3e-13 49.1 111.2 17 17 0.014 11 5.9 1.1 5 25 718 738 715 740 0.89 zinc-finger C2H2-type XPA_N PF01286.18 32 ZNF761-203 - 746 4.9e-11 42.5 88.0 1 18 3.3 2.7e+03 -1.5 0.0 4 18 217 231 216 234 0.85 XPA protein N-terminal XPA_N PF01286.18 32 ZNF761-203 - 746 4.9e-11 42.5 88.0 2 18 0.19 1.5e+02 2.5 0.2 19 25 241 247 237 253 0.57 XPA protein N-terminal XPA_N PF01286.18 32 ZNF761-203 - 746 4.9e-11 42.5 88.0 3 18 0.0096 7.8 6.6 0.2 3 13 271 281 269 285 0.88 XPA protein N-terminal XPA_N PF01286.18 32 ZNF761-203 - 746 4.9e-11 42.5 88.0 4 18 0.012 10 6.3 0.5 3 12 299 308 297 312 0.91 XPA protein N-terminal XPA_N PF01286.18 32 ZNF761-203 - 746 4.9e-11 42.5 88.0 5 18 0.011 9.1 6.4 0.1 3 12 327 336 325 346 0.83 XPA protein N-terminal XPA_N PF01286.18 32 ZNF761-203 - 746 4.9e-11 42.5 88.0 6 18 0.016 13 5.9 0.2 3 12 355 364 353 369 0.89 XPA protein N-terminal XPA_N PF01286.18 32 ZNF761-203 - 746 4.9e-11 42.5 88.0 7 18 0.018 14 5.8 0.2 3 12 383 392 381 396 0.90 XPA protein N-terminal XPA_N PF01286.18 32 ZNF761-203 - 746 4.9e-11 42.5 88.0 8 18 0.16 1.3e+02 2.7 0.3 3 10 411 418 409 420 0.86 XPA protein N-terminal XPA_N PF01286.18 32 ZNF761-203 - 746 4.9e-11 42.5 88.0 9 18 0.014 11 6.1 0.1 3 12 439 448 437 451 0.87 XPA protein N-terminal XPA_N PF01286.18 32 ZNF761-203 - 746 4.9e-11 42.5 88.0 10 18 0.026 21 5.3 0.7 3 11 467 475 465 477 0.90 XPA protein N-terminal XPA_N PF01286.18 32 ZNF761-203 - 746 4.9e-11 42.5 88.0 11 18 0.005 4.1 7.5 0.5 3 16 495 509 493 515 0.80 XPA protein N-terminal XPA_N PF01286.18 32 ZNF761-203 - 746 4.9e-11 42.5 88.0 12 18 0.02 16 5.6 0.1 3 11 523 531 521 533 0.89 XPA protein N-terminal XPA_N PF01286.18 32 ZNF761-203 - 746 4.9e-11 42.5 88.0 13 18 0.0053 4.3 7.5 0.2 3 13 551 561 549 566 0.87 XPA protein N-terminal XPA_N PF01286.18 32 ZNF761-203 - 746 4.9e-11 42.5 88.0 14 18 0.015 12 6.0 0.1 3 12 607 616 605 619 0.88 XPA protein N-terminal XPA_N PF01286.18 32 ZNF761-203 - 746 4.9e-11 42.5 88.0 15 18 0.018 14 5.8 0.3 3 11 635 643 633 645 0.89 XPA protein N-terminal XPA_N PF01286.18 32 ZNF761-203 - 746 4.9e-11 42.5 88.0 16 18 0.017 14 5.8 0.7 3 12 663 672 661 680 0.84 XPA protein N-terminal XPA_N PF01286.18 32 ZNF761-203 - 746 4.9e-11 42.5 88.0 17 18 0.015 13 6.0 0.2 3 12 691 700 689 705 0.89 XPA protein N-terminal XPA_N PF01286.18 32 ZNF761-203 - 746 4.9e-11 42.5 88.0 18 18 0.015 12 6.0 0.3 3 12 719 728 717 731 0.89 XPA protein N-terminal zf_UBZ PF18439.1 32 ZNF761-203 - 746 2.4e-07 30.2 104.4 1 17 0.041 34 4.2 0.3 1 20 240 260 240 261 0.79 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF761-203 - 746 2.4e-07 30.2 104.4 2 17 0.0011 0.89 9.2 0.5 3 20 270 288 268 289 0.89 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF761-203 - 746 2.4e-07 30.2 104.4 3 17 0.026 21 4.8 0.2 3 13 298 308 296 314 0.81 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF761-203 - 746 2.4e-07 30.2 104.4 4 17 0.036 29 4.4 0.2 3 12 326 335 324 342 0.85 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF761-203 - 746 2.4e-07 30.2 104.4 5 17 0.011 9.1 6.0 2.2 3 20 354 372 352 373 0.87 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF761-203 - 746 2.4e-07 30.2 104.4 6 17 0.0059 4.8 6.9 1.2 3 20 382 400 380 401 0.87 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF761-203 - 746 2.4e-07 30.2 104.4 7 17 0.069 56 3.4 0.3 3 11 410 418 408 423 0.85 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF761-203 - 746 2.4e-07 30.2 104.4 8 17 0.0015 1.2 8.7 0.3 2 20 437 456 436 457 0.88 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF761-203 - 746 2.4e-07 30.2 104.4 9 17 0.037 30 4.3 0.2 3 12 466 475 464 484 0.86 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF761-203 - 746 2.4e-07 30.2 104.4 10 17 0.022 18 5.1 0.9 3 14 494 505 492 513 0.81 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF761-203 - 746 2.4e-07 30.2 104.4 11 17 0.014 12 5.6 0.5 3 14 522 533 520 541 0.76 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF761-203 - 746 2.4e-07 30.2 104.4 12 17 0.01 8.3 6.1 0.2 3 13 550 560 548 568 0.85 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF761-203 - 746 2.4e-07 30.2 104.4 13 17 0.002 1.6 8.4 0.4 3 20 606 624 604 625 0.88 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF761-203 - 746 2.4e-07 30.2 104.4 14 17 0.027 22 4.8 0.1 3 13 634 644 632 652 0.82 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF761-203 - 746 2.4e-07 30.2 104.4 15 17 0.031 25 4.6 0.9 3 13 662 672 660 680 0.88 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF761-203 - 746 2.4e-07 30.2 104.4 16 17 0.015 12 5.6 1.3 3 20 690 708 688 709 0.80 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF761-203 - 746 2.4e-07 30.2 104.4 17 17 0.0059 4.8 6.9 0.7 3 20 718 736 716 737 0.84 Ubiquitin-Binding Zinc Finger # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF761-203.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF761-203.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF761-203.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF761-203.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF761-203.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:13:47 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF761-204.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF761-204.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF761-204.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF761-204.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF761-204.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:13:48 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- KRAB PF01352.27 42 ZNF761-205 - 70 8.3e-29 99.0 0.1 1 1 6.4e-33 1.1e-28 98.5 0.1 1 42 7 48 7 48 0.98 KRAB box # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF761-205.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF761-205.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF761-205.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF761-205.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF761-205.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:13:48 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZNF76-201 - 217 1.4e-26 91.6 22.1 1 4 4.5e-13 8.1e-10 38.7 1.3 1 26 20 47 20 47 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF76-201 - 217 1.4e-26 91.6 22.1 2 4 3.1e-11 5.5e-08 32.9 0.3 1 26 50 77 50 77 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF76-201 - 217 1.4e-26 91.6 22.1 3 4 8.3e-09 1.5e-05 25.2 2.2 5 26 84 107 82 107 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF76-201 - 217 1.4e-26 91.6 22.1 4 4 0.0037 6.7 7.3 0.2 1 12 110 121 110 131 0.86 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZNF76-201 - 217 5.1e-17 61.3 16.2 1 4 0.063 1.1e+02 3.5 0.1 14 23 19 28 17 28 0.89 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF76-201 - 217 5.1e-17 61.3 16.2 2 4 2.1e-09 3.7e-06 27.1 0.4 1 23 34 58 34 58 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF76-201 - 217 5.1e-17 61.3 16.2 3 4 5.9e-06 0.011 16.2 0.6 1 23 64 88 64 88 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF76-201 - 217 5.1e-17 61.3 16.2 4 4 3.4e-08 6e-05 23.3 0.8 1 23 94 118 94 118 0.99 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZNF76-201 - 217 7.3e-13 48.2 15.6 1 4 0.086 1.5e+02 3.6 0.1 12 23 17 28 11 29 0.82 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF76-201 - 217 7.3e-13 48.2 15.6 2 4 1.9e-07 0.00034 21.2 0.4 1 23 34 58 34 59 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF76-201 - 217 7.3e-13 48.2 15.6 3 4 9.6e-06 0.017 15.9 0.5 1 23 64 88 64 89 0.84 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF76-201 - 217 7.3e-13 48.2 15.6 4 4 9.3e-06 0.017 15.9 0.4 1 23 94 118 94 119 0.87 C2H2-type zinc finger # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF76-201.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF76-201.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF76-201.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF76-201.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF76-201.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:13:48 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZNF76-202 - 515 1.4e-36 123.3 46.1 1 6 5.8e-08 9.5e-05 22.7 0.8 1 26 181 208 181 208 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF76-202 - 515 1.4e-36 123.3 46.1 2 6 1.5e-12 2.5e-09 37.1 1.3 1 26 211 238 211 238 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF76-202 - 515 1.4e-36 123.3 46.1 3 6 1.1e-10 1.7e-07 31.3 0.3 1 26 241 268 241 268 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF76-202 - 515 1.4e-36 123.3 46.1 4 6 2.8e-08 4.5e-05 23.7 2.2 5 26 275 298 273 298 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF76-202 - 515 1.4e-36 123.3 46.1 5 6 5.5e-09 9e-06 25.9 0.5 1 25 301 327 301 328 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF76-202 - 515 1.4e-36 123.3 46.1 6 6 0.003 4.9 7.7 7.3 2 24 332 354 331 356 0.80 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZNF76-202 - 515 1.8e-29 100.5 46.2 1 7 2.3e-05 0.037 14.5 2.4 1 23 165 189 165 189 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF76-202 - 515 1.8e-29 100.5 46.2 2 7 1.7e-06 0.0027 18.1 0.3 1 23 195 219 195 219 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF76-202 - 515 1.8e-29 100.5 46.2 3 7 7e-09 1.1e-05 25.5 0.4 1 23 225 249 225 249 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF76-202 - 515 1.8e-29 100.5 46.2 4 7 2e-05 0.032 14.7 0.6 1 23 255 279 255 279 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF76-202 - 515 1.8e-29 100.5 46.2 5 7 1.1e-07 0.00018 21.7 0.8 1 23 285 309 285 309 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF76-202 - 515 1.8e-29 100.5 46.2 6 7 1.3e-05 0.021 15.3 1.1 1 23 315 339 315 339 0.95 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF76-202 - 515 1.8e-29 100.5 46.2 7 7 3.6e-07 0.00059 20.1 1.6 1 23 345 368 345 368 0.98 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZNF76-202 - 515 3e-19 68.0 43.6 1 7 0.0005 0.81 10.7 1.7 1 23 165 189 165 190 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF76-202 - 515 3e-19 68.0 43.6 2 7 1e-05 0.017 15.9 0.2 1 23 195 219 195 220 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF76-202 - 515 3e-19 68.0 43.6 3 7 6.6e-07 0.0011 19.7 0.4 1 23 225 249 225 250 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF76-202 - 515 3e-19 68.0 43.6 4 7 3.3e-05 0.054 14.4 0.5 1 23 255 279 255 280 0.84 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF76-202 - 515 3e-19 68.0 43.6 5 7 3.2e-05 0.051 14.4 0.4 1 23 285 309 285 310 0.87 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF76-202 - 515 3e-19 68.0 43.6 6 7 0.00041 0.67 11.0 2.1 1 23 315 339 315 341 0.79 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF76-202 - 515 3e-19 68.0 43.6 7 7 0.00085 1.4 10.0 0.9 1 24 345 368 345 368 0.93 C2H2-type zinc finger zf-C2H2_jaz PF12171.8 27 ZNF76-202 - 515 1.3e-07 31.7 6.5 1 6 3 4.9e+03 -2.0 0.0 7 22 172 187 172 187 0.86 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF76-202 - 515 1.3e-07 31.7 6.5 2 6 0.32 5.2e+02 1.1 0.0 7 24 202 219 200 219 0.90 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF76-202 - 515 1.3e-07 31.7 6.5 3 6 6.1e-05 0.1 12.9 0.1 5 24 230 249 230 249 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF76-202 - 515 1.3e-07 31.7 6.5 4 6 0.32 5.2e+02 1.1 0.0 7 24 262 279 262 279 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF76-202 - 515 1.3e-07 31.7 6.5 5 6 0.00074 1.2 9.5 0.0 6 22 291 307 290 307 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF76-202 - 515 1.3e-07 31.7 6.5 6 6 0.02 33 4.9 0.1 2 23 345 366 344 368 0.91 Zinc-finger double-stranded RNA-binding # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF76-202.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF76-202.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF76-202.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF76-202.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF76-202.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:13:49 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZNF76-203 - 570 2.9e-36 122.3 46.1 1 6 6.6e-08 0.00011 22.5 0.8 1 26 181 208 181 208 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF76-203 - 570 2.9e-36 122.3 46.1 2 6 1.7e-12 2.8e-09 37.0 1.3 1 26 211 238 211 238 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF76-203 - 570 2.9e-36 122.3 46.1 3 6 1.2e-10 1.9e-07 31.2 0.3 1 26 241 268 241 268 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF76-203 - 570 2.9e-36 122.3 46.1 4 6 3.1e-08 5.1e-05 23.5 2.2 5 26 275 298 273 298 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF76-203 - 570 2.9e-36 122.3 46.1 5 6 6.2e-09 1e-05 25.7 0.5 1 25 301 327 301 328 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF76-203 - 570 2.9e-36 122.3 46.1 6 6 0.0034 5.6 7.6 7.3 2 24 332 354 331 356 0.80 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZNF76-203 - 570 4.1e-29 99.4 46.2 1 7 2.5e-05 0.042 14.3 2.4 1 23 165 189 165 189 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF76-203 - 570 4.1e-29 99.4 46.2 2 7 1.9e-06 0.0031 17.9 0.3 1 23 195 219 195 219 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF76-203 - 570 4.1e-29 99.4 46.2 3 7 7.9e-09 1.3e-05 25.4 0.4 1 23 225 249 225 249 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF76-203 - 570 4.1e-29 99.4 46.2 4 7 2.2e-05 0.037 14.5 0.6 1 23 255 279 255 279 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF76-203 - 570 4.1e-29 99.4 46.2 5 7 1.3e-07 0.00021 21.6 0.8 1 23 285 309 285 309 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF76-203 - 570 4.1e-29 99.4 46.2 6 7 1.5e-05 0.024 15.1 1.1 1 23 315 339 315 339 0.95 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF76-203 - 570 4.1e-29 99.4 46.2 7 7 4.1e-07 0.00067 20.0 1.6 1 23 345 368 345 368 0.98 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZNF76-203 - 570 7e-19 66.9 43.6 1 7 0.00056 0.92 10.5 1.7 1 23 165 189 165 190 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF76-203 - 570 7e-19 66.9 43.6 2 7 1.2e-05 0.019 15.8 0.2 1 23 195 219 195 220 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF76-203 - 570 7e-19 66.9 43.6 3 7 7.4e-07 0.0012 19.5 0.4 1 23 225 249 225 250 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF76-203 - 570 7e-19 66.9 43.6 4 7 3.7e-05 0.061 14.2 0.5 1 23 255 279 255 280 0.84 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF76-203 - 570 7e-19 66.9 43.6 5 7 3.6e-05 0.058 14.3 0.4 1 23 285 309 285 310 0.87 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF76-203 - 570 7e-19 66.9 43.6 6 7 0.00046 0.75 10.8 2.1 1 23 315 339 315 341 0.79 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF76-203 - 570 7e-19 66.9 43.6 7 7 0.00096 1.6 9.8 0.9 1 24 345 368 345 368 0.93 C2H2-type zinc finger zf-C2H2_jaz PF12171.8 27 ZNF76-203 - 570 2.4e-07 30.9 6.5 1 6 3.4 5.5e+03 -2.2 0.0 7 22 172 187 172 187 0.86 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF76-203 - 570 2.4e-07 30.9 6.5 2 6 0.36 5.9e+02 0.9 0.0 7 24 202 219 200 219 0.90 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF76-203 - 570 2.4e-07 30.9 6.5 3 6 6.9e-05 0.11 12.8 0.1 5 24 230 249 230 249 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF76-203 - 570 2.4e-07 30.9 6.5 4 6 0.36 5.9e+02 0.9 0.0 7 24 262 279 262 279 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF76-203 - 570 2.4e-07 30.9 6.5 5 6 0.00083 1.4 9.3 0.0 6 22 291 307 290 307 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF76-203 - 570 2.4e-07 30.9 6.5 6 6 0.023 37 4.8 0.1 2 23 345 366 344 368 0.91 Zinc-finger double-stranded RNA-binding # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF76-203.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF76-203.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF76-203.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF76-203.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF76-203.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:13:49 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF76-204.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF76-204.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF76-204.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF76-204.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF76-204.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:13:50 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF76-205.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF76-205.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF76-205.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF76-205.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF76-205.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:13:50 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF76-206.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF76-206.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF76-206.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF76-206.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF76-206.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:13:50 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF76-208.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF76-208.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF76-208.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF76-208.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF76-208.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:13:51 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZNF76-209 - 333 7.6e-32 108.3 26.1 1 5 4.6e-08 5.5e-05 23.4 0.8 1 26 181 208 181 208 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF76-209 - 333 7.6e-32 108.3 26.1 2 5 1.2e-12 1.5e-09 37.9 1.3 1 26 211 238 211 238 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF76-209 - 333 7.6e-32 108.3 26.1 3 5 8.3e-11 9.9e-08 32.1 0.3 1 26 241 268 241 268 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF76-209 - 333 7.6e-32 108.3 26.1 4 5 2.2e-08 2.6e-05 24.4 2.2 5 26 275 298 273 298 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF76-209 - 333 7.6e-32 108.3 26.1 5 5 0.03 36 5.0 0.0 1 11 301 311 301 329 0.92 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZNF76-209 - 333 4.7e-23 80.3 29.0 1 5 1.8e-05 0.021 15.2 2.4 1 23 165 189 165 189 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF76-209 - 333 4.7e-23 80.3 29.0 2 5 1.3e-06 0.0016 18.8 0.3 1 23 195 219 195 219 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF76-209 - 333 4.7e-23 80.3 29.0 3 5 5.6e-09 6.7e-06 26.3 0.4 1 23 225 249 225 249 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF76-209 - 333 4.7e-23 80.3 29.0 4 5 1.6e-05 0.019 15.4 0.6 1 23 255 279 255 279 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF76-209 - 333 4.7e-23 80.3 29.0 5 5 9e-08 0.00011 22.5 0.8 1 23 285 309 285 309 0.99 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZNF76-209 - 333 2e-17 62.3 26.2 1 5 0.00039 0.47 11.4 1.7 1 23 165 189 165 190 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF76-209 - 333 2e-17 62.3 26.2 2 5 8.1e-06 0.0097 16.7 0.2 1 23 195 219 195 220 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF76-209 - 333 2e-17 62.3 26.2 3 5 5.2e-07 0.00062 20.4 0.4 1 23 225 249 225 250 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF76-209 - 333 2e-17 62.3 26.2 4 5 2.6e-05 0.031 15.1 0.5 1 23 255 279 255 280 0.84 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF76-209 - 333 2e-17 62.3 26.2 5 5 2.5e-05 0.03 15.2 0.4 1 23 285 309 285 310 0.87 C2H2-type zinc finger zf-C2H2_jaz PF12171.8 27 ZNF76-209 - 333 1.1e-07 31.9 2.7 1 5 2.5 3e+03 -1.3 0.0 7 22 172 187 172 187 0.86 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF76-209 - 333 1.1e-07 31.9 2.7 2 5 0.26 3.1e+02 1.8 0.0 7 24 202 219 200 219 0.91 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF76-209 - 333 1.1e-07 31.9 2.7 3 5 5e-05 0.06 13.7 0.1 5 24 230 249 230 249 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF76-209 - 333 1.1e-07 31.9 2.7 4 5 0.26 3.1e+02 1.8 0.0 7 24 262 279 262 279 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF76-209 - 333 1.1e-07 31.9 2.7 5 5 0.00061 0.73 10.2 0.0 6 22 291 307 290 307 0.93 Zinc-finger double-stranded RNA-binding # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF76-209.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF76-209.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF76-209.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF76-209.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF76-209.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:13:51 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF76-210.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF76-210.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF76-210.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF76-210.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF76-210.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:13:51 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF76-211.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF76-211.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF76-211.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF76-211.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF76-211.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:13:52 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZNF764-201 - 408 1.2e-45 152.0 40.8 1 7 0.32 1.9e+02 2.7 0.1 17 25 177 185 169 185 0.89 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF764-201 - 408 1.2e-45 152.0 40.8 2 7 2.2e-09 1.3e-06 28.5 1.9 2 26 190 214 189 214 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF764-201 - 408 1.2e-45 152.0 40.8 3 7 2.2e-08 1.3e-05 25.3 0.5 1 25 217 241 217 242 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF764-201 - 408 1.2e-45 152.0 40.8 4 7 5.9e-09 3.6e-06 27.2 0.1 1 25 245 269 245 270 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF764-201 - 408 1.2e-45 152.0 40.8 5 7 5.6e-10 3.3e-07 30.4 0.2 1 25 273 297 273 298 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF764-201 - 408 1.2e-45 152.0 40.8 6 7 1.8e-11 1.1e-08 35.2 1.9 1 24 301 324 301 326 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF764-201 - 408 1.2e-45 152.0 40.8 7 7 2.5e-09 1.5e-06 28.3 0.4 4 25 332 353 330 354 0.93 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZNF764-201 - 408 7.5e-37 123.8 39.3 1 7 0.0018 1.1 9.9 0.2 3 23 177 197 177 197 0.95 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF764-201 - 408 7.5e-37 123.8 39.3 2 7 2.4e-06 0.0014 18.9 1.9 1 23 203 225 203 225 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF764-201 - 408 7.5e-37 123.8 39.3 3 7 4.8e-08 2.9e-05 24.3 1.2 1 23 231 253 231 253 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF764-201 - 408 7.5e-37 123.8 39.3 4 7 5.1e-07 0.0003 21.1 0.4 3 23 261 281 259 281 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF764-201 - 408 7.5e-37 123.8 39.3 5 7 5.1e-10 3.1e-07 30.5 0.2 1 23 287 309 287 309 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF764-201 - 408 7.5e-37 123.8 39.3 6 7 4.7e-09 2.8e-06 27.5 1.4 1 23 315 337 315 337 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF764-201 - 408 7.5e-37 123.8 39.3 7 7 2e-05 0.012 16.0 0.1 1 20 343 362 343 365 0.94 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZNF764-201 - 408 1.6e-22 78.2 42.3 1 7 0.02 12 7.0 0.9 3 23 177 197 175 198 0.83 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF764-201 - 408 1.6e-22 78.2 42.3 2 7 0.0007 0.42 11.6 1.7 1 23 203 225 203 226 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF764-201 - 408 1.6e-22 78.2 42.3 3 7 0.00014 0.083 13.8 1.1 1 23 231 253 231 254 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF764-201 - 408 1.6e-22 78.2 42.3 4 7 5.3e-05 0.032 15.1 0.4 2 23 260 281 259 282 0.91 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF764-201 - 408 1.6e-22 78.2 42.3 5 7 7.6e-08 4.6e-05 23.9 0.1 1 23 287 309 287 310 0.97 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF764-201 - 408 1.6e-22 78.2 42.3 6 7 6.8e-06 0.0041 17.8 1.3 1 23 315 337 315 338 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF764-201 - 408 1.6e-22 78.2 42.3 7 7 2.5e-05 0.015 16.1 0.2 1 23 343 365 343 366 0.92 C2H2-type zinc finger KRAB PF01352.27 42 ZNF764-201 - 408 3.5e-21 74.6 0.0 1 1 1.2e-23 7e-21 73.6 0.0 2 42 26 66 25 66 0.98 KRAB box zf-C2H2_11 PF16622.5 29 ZNF764-201 - 408 2.6e-12 46.3 28.6 1 7 1.3 7.8e+02 -0.0 0.1 7 20 177 190 175 195 0.75 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF764-201 - 408 2.6e-12 46.3 28.6 2 7 9.7e-05 0.058 13.2 0.7 6 26 204 224 201 225 0.93 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF764-201 - 408 2.6e-12 46.3 28.6 3 7 1.1e-05 0.0064 16.2 1.0 5 26 231 252 228 253 0.92 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF764-201 - 408 2.6e-12 46.3 28.6 4 7 0.00038 0.23 11.3 0.5 7 26 261 280 258 281 0.93 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF764-201 - 408 2.6e-12 46.3 28.6 5 7 0.0004 0.24 11.2 0.0 7 25 289 307 284 309 0.91 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF764-201 - 408 2.6e-12 46.3 28.6 6 7 0.012 7.2 6.5 0.2 7 14 317 324 314 334 0.87 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF764-201 - 408 2.6e-12 46.3 28.6 7 7 0.13 76 3.2 0.1 7 19 345 357 342 365 0.76 zinc-finger C2H2-type # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF764-201.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF764-201.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF764-201.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF764-201.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF764-201.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:13:52 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZNF764-202 - 407 1.1e-45 152.0 40.8 1 7 0.31 1.9e+02 2.7 0.1 17 25 176 184 168 184 0.89 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF764-202 - 407 1.1e-45 152.0 40.8 2 7 2.2e-09 1.3e-06 28.5 1.9 2 26 189 213 188 213 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF764-202 - 407 1.1e-45 152.0 40.8 3 7 2.2e-08 1.3e-05 25.4 0.5 1 25 216 240 216 241 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF764-202 - 407 1.1e-45 152.0 40.8 4 7 5.9e-09 3.5e-06 27.2 0.1 1 25 244 268 244 269 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF764-202 - 407 1.1e-45 152.0 40.8 5 7 5.6e-10 3.3e-07 30.4 0.2 1 25 272 296 272 297 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF764-202 - 407 1.1e-45 152.0 40.8 6 7 1.8e-11 1.1e-08 35.2 1.9 1 24 300 323 300 325 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF764-202 - 407 1.1e-45 152.0 40.8 7 7 2.5e-09 1.5e-06 28.3 0.4 4 25 331 352 329 353 0.93 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZNF764-202 - 407 7.3e-37 123.8 39.3 1 7 0.0018 1.1 9.9 0.2 3 23 176 196 176 196 0.95 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF764-202 - 407 7.3e-37 123.8 39.3 2 7 2.4e-06 0.0014 18.9 1.9 1 23 202 224 202 224 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF764-202 - 407 7.3e-37 123.8 39.3 3 7 4.8e-08 2.9e-05 24.3 1.2 1 23 230 252 230 252 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF764-202 - 407 7.3e-37 123.8 39.3 4 7 5.1e-07 0.0003 21.1 0.4 3 23 260 280 258 280 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF764-202 - 407 7.3e-37 123.8 39.3 5 7 5.1e-10 3.1e-07 30.5 0.2 1 23 286 308 286 308 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF764-202 - 407 7.3e-37 123.8 39.3 6 7 4.7e-09 2.8e-06 27.5 1.4 1 23 314 336 314 336 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF764-202 - 407 7.3e-37 123.8 39.3 7 7 2e-05 0.012 16.0 0.1 1 20 342 361 342 364 0.94 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZNF764-202 - 407 1.6e-22 78.2 42.3 1 7 0.02 12 7.0 0.9 3 23 176 196 174 197 0.83 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF764-202 - 407 1.6e-22 78.2 42.3 2 7 0.0007 0.42 11.6 1.7 1 23 202 224 202 225 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF764-202 - 407 1.6e-22 78.2 42.3 3 7 0.00014 0.083 13.8 1.1 1 23 230 252 230 253 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF764-202 - 407 1.6e-22 78.2 42.3 4 7 5.3e-05 0.032 15.1 0.4 2 23 259 280 258 281 0.91 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF764-202 - 407 1.6e-22 78.2 42.3 5 7 7.6e-08 4.5e-05 23.9 0.1 1 23 286 308 286 309 0.97 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF764-202 - 407 1.6e-22 78.2 42.3 6 7 6.8e-06 0.0041 17.8 1.3 1 23 314 336 314 337 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF764-202 - 407 1.6e-22 78.2 42.3 7 7 2.5e-05 0.015 16.1 0.2 1 23 342 364 342 365 0.92 C2H2-type zinc finger KRAB PF01352.27 42 ZNF764-202 - 407 3.5e-21 74.6 0.0 1 1 1.2e-23 7e-21 73.6 0.0 2 42 26 66 25 66 0.98 KRAB box zf-C2H2_11 PF16622.5 29 ZNF764-202 - 407 2.5e-12 46.3 28.6 1 7 1.3 7.8e+02 -0.0 0.1 7 20 176 189 174 194 0.75 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF764-202 - 407 2.5e-12 46.3 28.6 2 7 9.7e-05 0.058 13.2 0.7 6 26 203 223 200 224 0.93 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF764-202 - 407 2.5e-12 46.3 28.6 3 7 1.1e-05 0.0063 16.2 1.0 5 26 230 251 227 252 0.92 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF764-202 - 407 2.5e-12 46.3 28.6 4 7 0.00038 0.23 11.3 0.5 7 26 260 279 257 280 0.93 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF764-202 - 407 2.5e-12 46.3 28.6 5 7 0.0004 0.24 11.2 0.0 7 25 288 306 283 308 0.91 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF764-202 - 407 2.5e-12 46.3 28.6 6 7 0.012 7.2 6.5 0.2 7 14 316 323 313 333 0.87 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF764-202 - 407 2.5e-12 46.3 28.6 7 7 0.13 76 3.2 0.1 7 19 344 356 341 364 0.76 zinc-finger C2H2-type # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF764-202.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF764-202.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF764-202.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF764-202.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF764-202.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:13:52 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- KRAB PF01352.27 42 ZNF764-203 - 111 6e-22 77.0 0.0 1 1 4.4e-26 7.8e-22 76.6 0.0 2 42 26 66 25 66 0.98 KRAB box # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF764-203.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF764-203.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF764-203.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF764-203.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF764-203.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:13:53 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZNF765-201 - 523 6.2e-68 222.4 113.0 1 13 2.9 2.2e+03 -0.6 0.2 3 13 75 85 75 88 0.85 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF765-201 - 523 6.2e-68 222.4 113.0 2 13 0.35 2.6e+02 2.3 0.2 8 23 208 223 205 226 0.77 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF765-201 - 523 6.2e-68 222.4 113.0 3 13 1e-08 7.5e-06 26.1 0.1 2 26 230 254 230 254 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF765-201 - 523 6.2e-68 222.4 113.0 4 13 3.3e-10 2.4e-07 30.8 4.0 4 25 260 281 257 282 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF765-201 - 523 6.2e-68 222.4 113.0 5 13 6e-09 4.5e-06 26.8 5.4 5 24 289 308 285 309 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF765-201 - 523 6.2e-68 222.4 113.0 6 13 7.2e-11 5.4e-08 32.9 0.9 2 25 314 337 313 338 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF765-201 - 523 6.2e-68 222.4 113.0 7 13 2.2e-09 1.6e-06 28.3 3.8 5 25 345 365 341 366 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF765-201 - 523 6.2e-68 222.4 113.0 8 13 4.2e-07 0.00032 21.0 10.6 5 26 373 394 368 394 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF765-201 - 523 6.2e-68 222.4 113.0 9 13 1.3e-10 9.9e-08 32.1 2.2 1 25 397 421 397 422 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF765-201 - 523 6.2e-68 222.4 113.0 10 13 4.4e-07 0.00033 21.0 3.1 7 25 430 448 429 450 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF765-201 - 523 6.2e-68 222.4 113.0 11 13 1.2e-09 8.7e-07 29.1 0.6 1 25 452 476 452 477 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF765-201 - 523 6.2e-68 222.4 113.0 12 13 9.9e-10 7.4e-07 29.3 1.8 1 25 480 504 480 505 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF765-201 - 523 6.2e-68 222.4 113.0 13 13 0.19 1.4e+02 3.1 0.3 1 15 508 522 508 523 0.89 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZNF765-201 - 523 2.1e-44 147.6 108.9 1 11 0.09 67 4.2 0.4 7 23 221 237 215 237 0.79 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF765-201 - 523 2.1e-44 147.6 108.9 2 11 1.2e-05 0.0086 16.5 3.4 1 21 243 263 243 265 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF765-201 - 523 2.1e-44 147.6 108.9 3 11 7.8e-06 0.0058 17.0 5.4 1 23 271 293 271 293 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF765-201 - 523 2.1e-44 147.6 108.9 4 11 1.4e-06 0.0011 19.3 2.8 1 23 299 321 299 321 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF765-201 - 523 2.1e-44 147.6 108.9 5 11 1.5e-06 0.0011 19.3 5.3 1 23 327 349 327 349 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF765-201 - 523 2.1e-44 147.6 108.9 6 11 1.7e-05 0.013 15.9 10.0 1 23 355 377 355 377 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF765-201 - 523 2.1e-44 147.6 108.9 7 11 2.1e-07 0.00016 21.9 6.1 1 23 383 405 383 405 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF765-201 - 523 2.1e-44 147.6 108.9 8 11 6.4e-05 0.048 14.1 0.2 1 16 411 426 411 428 0.88 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF765-201 - 523 2.1e-44 147.6 108.9 9 11 3.8e-08 2.9e-05 24.3 0.5 1 23 438 460 438 460 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF765-201 - 523 2.1e-44 147.6 108.9 10 11 4.4e-08 3.3e-05 24.1 4.7 1 23 466 488 466 488 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF765-201 - 523 2.1e-44 147.6 108.9 11 11 2.4e-08 1.8e-05 24.9 0.3 1 21 494 514 494 515 0.96 Zinc finger, C2H2 type KRAB PF01352.27 42 ZNF765-201 - 523 2.4e-27 94.3 0.1 1 1 5.9e-30 4.4e-27 93.4 0.1 2 42 8 48 7 48 0.98 KRAB box zf-C2H2_4 PF13894.6 24 ZNF765-201 - 523 6.8e-21 73.2 100.8 1 11 0.15 1.1e+02 4.0 0.4 2 23 216 237 215 238 0.79 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF765-201 - 523 6.8e-21 73.2 100.8 2 11 4.6e-05 0.035 15.0 2.6 1 21 243 263 243 265 0.90 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF765-201 - 523 6.8e-21 73.2 100.8 3 11 0.00037 0.28 12.1 3.9 1 23 271 293 271 294 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF765-201 - 523 6.8e-21 73.2 100.8 4 11 0.0003 0.22 12.4 2.2 1 23 299 321 299 322 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF765-201 - 523 6.8e-21 73.2 100.8 5 11 0.00013 0.098 13.5 4.0 1 23 327 349 327 350 0.89 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF765-201 - 523 6.8e-21 73.2 100.8 6 11 0.0021 1.6 9.8 8.0 1 23 355 377 355 378 0.91 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF765-201 - 523 6.8e-21 73.2 100.8 7 11 0.00021 0.15 12.9 4.4 1 23 383 405 383 406 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF765-201 - 523 6.8e-21 73.2 100.8 8 11 0.0062 4.7 8.3 0.6 1 15 411 425 411 432 0.85 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF765-201 - 523 6.8e-21 73.2 100.8 9 11 0.00037 0.27 12.2 0.5 1 23 438 460 438 461 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF765-201 - 523 6.8e-21 73.2 100.8 10 11 5.5e-05 0.041 14.7 3.1 1 23 466 488 466 489 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF765-201 - 523 6.8e-21 73.2 100.8 11 11 0.00025 0.18 12.7 0.3 1 21 494 514 494 516 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF765-201 - 523 3.9e-10 39.5 86.4 1 10 0.00013 0.1 12.6 2.9 2 13 243 254 242 268 0.84 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF765-201 - 523 3.9e-10 39.5 86.4 2 10 0.00065 0.49 10.5 4.0 2 24 271 293 271 296 0.88 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF765-201 - 523 3.9e-10 39.5 86.4 3 10 0.041 31 4.7 1.8 2 12 299 309 299 309 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF765-201 - 523 3.9e-10 39.5 86.4 4 10 0.0021 1.6 8.8 2.9 2 12 327 337 327 349 0.90 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF765-201 - 523 3.9e-10 39.5 86.4 5 10 0.00054 0.4 10.7 1.2 2 12 355 365 355 366 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF765-201 - 523 3.9e-10 39.5 86.4 6 10 0.00065 0.48 10.5 4.4 2 24 383 405 383 408 0.89 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF765-201 - 523 3.9e-10 39.5 86.4 7 10 0.00046 0.35 10.9 0.9 2 12 411 421 411 423 0.92 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF765-201 - 523 3.9e-10 39.5 86.4 8 10 0.065 49 4.1 0.7 2 12 438 448 438 460 0.87 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF765-201 - 523 3.9e-10 39.5 86.4 9 10 0.0002 0.15 12.1 3.0 2 22 466 486 466 490 0.87 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF765-201 - 523 3.9e-10 39.5 86.4 10 10 0.8 5.9e+02 0.6 0.2 2 21 494 513 494 515 0.76 C2H2-type zinc finger Zn-ribbon_8 PF09723.10 40 ZNF765-201 - 523 4.1e-07 30.0 69.3 1 9 0.00069 0.52 10.5 5.7 5 36 242 280 242 284 0.83 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF765-201 - 523 4.1e-07 30.0 69.3 2 9 0.0041 3.1 8.0 0.9 6 16 271 281 269 292 0.91 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF765-201 - 523 4.1e-07 30.0 69.3 3 9 0.00056 0.42 10.8 6.3 6 36 299 336 298 340 0.85 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF765-201 - 523 4.1e-07 30.0 69.3 4 9 0.00032 0.24 11.5 6.7 6 38 327 366 326 367 0.80 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF765-201 - 523 4.1e-07 30.0 69.3 5 9 0.026 20 5.4 7.5 6 32 355 388 354 389 0.76 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF765-201 - 523 4.1e-07 30.0 69.3 6 9 0.0014 1 9.5 5.9 6 37 383 421 382 424 0.76 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF765-201 - 523 4.1e-07 30.0 69.3 7 9 0.0023 1.7 8.8 7.2 6 34 411 445 409 448 0.84 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF765-201 - 523 4.1e-07 30.0 69.3 8 9 0.00014 0.11 12.7 6.1 6 38 438 477 436 479 0.88 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF765-201 - 523 4.1e-07 30.0 69.3 9 9 0.019 14 5.9 0.3 6 16 494 504 493 514 0.85 Zinc ribbon domain # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF765-201.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF765-201.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF765-201.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF765-201.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF765-201.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:13:53 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF765-202.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF765-202.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF765-202.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF765-202.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF765-202.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:13:54 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF765-203.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF765-203.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF765-203.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF765-203.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF765-203.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:13:54 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF765-204.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF765-204.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF765-204.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF765-204.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF765-204.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:13:54 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF765-205.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF765-205.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF765-205.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF765-205.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF765-205.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:13:55 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF765-206.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF765-206.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF765-206.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF765-206.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF765-206.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:13:55 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- V1R PF03402.14 265 ZNF765-207 - 53 3.7e-08 33.3 0.2 1 1 2.2e-12 3.9e-08 33.3 0.2 165 205 3 43 1 47 0.91 Vomeronasal organ pheromone receptor family, V1R # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF765-207.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF765-207.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF765-207.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF765-207.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF765-207.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:13:55 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF765-208.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF765-208.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF765-208.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF765-208.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF765-208.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:13:56 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZNF766-201 - 468 2.3e-59 195.3 80.2 1 10 0.55 3.4e+02 1.9 0.1 9 18 181 190 177 196 0.81 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF766-201 - 468 2.3e-59 195.3 80.2 2 10 0.023 14 6.3 0.7 5 23 205 223 202 224 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF766-201 - 468 2.3e-59 195.3 80.2 3 10 5.1e-07 0.00031 21.0 0.1 2 25 230 253 229 254 0.87 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF766-201 - 468 2.3e-59 195.3 80.2 4 10 5.3e-11 3.3e-08 33.6 0.8 2 25 258 281 257 282 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF766-201 - 468 2.3e-59 195.3 80.2 5 10 2.8e-09 1.7e-06 28.1 3.4 2 25 286 309 285 310 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF766-201 - 468 2.3e-59 195.3 80.2 6 10 4.9e-08 3e-05 24.2 0.5 2 25 314 337 313 337 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF766-201 - 468 2.3e-59 195.3 80.2 7 10 1.3e-10 8.3e-08 32.3 2.0 1 26 341 366 341 366 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF766-201 - 468 2.3e-59 195.3 80.2 8 10 3.5e-10 2.2e-07 31.0 1.7 2 25 370 393 369 394 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF766-201 - 468 2.3e-59 195.3 80.2 9 10 1.4e-11 8.4e-09 35.5 1.7 1 25 397 421 397 422 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF766-201 - 468 2.3e-59 195.3 80.2 10 10 6.5e-10 4e-07 30.2 4.5 1 26 425 450 425 450 0.94 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZNF766-201 - 468 7e-52 171.1 75.6 1 10 0.3 1.9e+02 2.8 0.0 7 23 193 209 187 209 0.79 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF766-201 - 468 7e-52 171.1 75.6 2 10 1.8e-05 0.011 16.1 0.1 2 21 216 235 216 236 0.95 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF766-201 - 468 7e-52 171.1 75.6 3 10 2.4e-06 0.0015 18.9 0.4 1 23 243 265 243 265 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF766-201 - 468 7e-52 171.1 75.6 4 10 1.4e-08 8.5e-06 25.9 0.8 1 23 271 293 271 293 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF766-201 - 468 7e-52 171.1 75.6 5 10 1.8e-07 0.00011 22.4 1.8 1 23 299 321 299 321 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF766-201 - 468 7e-52 171.1 75.6 6 10 4.4e-07 0.00027 21.2 1.8 1 23 327 349 327 349 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF766-201 - 468 7e-52 171.1 75.6 7 10 7.2e-08 4.4e-05 23.7 4.3 1 23 355 377 355 377 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF766-201 - 468 7e-52 171.1 75.6 8 10 4.1e-09 2.5e-06 27.6 3.2 1 23 383 405 383 405 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF766-201 - 468 7e-52 171.1 75.6 9 10 4.6e-10 2.8e-07 30.6 1.5 1 23 411 433 411 433 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF766-201 - 468 7e-52 171.1 75.6 10 10 3.5e-08 2.2e-05 24.7 4.1 1 23 439 462 439 462 0.98 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZNF766-201 - 468 8e-28 94.7 74.0 1 10 5.2 3.2e+03 -0.5 0.0 7 23 193 209 187 210 0.77 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF766-201 - 468 8e-28 94.7 74.0 2 10 0.0011 0.66 11.0 0.1 2 21 216 235 215 237 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF766-201 - 468 8e-28 94.7 74.0 3 10 5.5e-05 0.034 15.0 0.4 1 23 243 265 243 266 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF766-201 - 468 8e-28 94.7 74.0 4 10 4.7e-06 0.0029 18.3 0.6 1 23 271 293 271 294 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF766-201 - 468 8e-28 94.7 74.0 5 10 1e-05 0.0065 17.2 1.8 1 23 299 321 299 322 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF766-201 - 468 8e-28 94.7 74.0 6 10 2.2e-05 0.013 16.2 1.4 1 23 327 349 327 350 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF766-201 - 468 8e-28 94.7 74.0 7 10 0.00051 0.31 12.0 3.1 1 23 355 377 355 378 0.97 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF766-201 - 468 8e-28 94.7 74.0 8 10 1e-05 0.0064 17.2 2.9 1 23 383 405 383 406 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF766-201 - 468 8e-28 94.7 74.0 9 10 7.8e-06 0.0048 17.6 1.0 1 23 411 433 411 434 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF766-201 - 468 8e-28 94.7 74.0 10 10 0.00028 0.17 12.8 5.2 1 24 439 462 439 462 0.91 C2H2-type zinc finger KRAB PF01352.27 42 ZNF766-201 - 468 1.7e-26 91.6 0.1 1 1 5.1e-29 3.1e-26 90.7 0.1 2 42 9 49 8 49 0.98 KRAB box Zn-ribbon_8 PF09723.10 40 ZNF766-201 - 468 2.7e-16 59.4 41.7 1 8 0.00058 0.36 11.0 0.4 6 37 187 225 186 227 0.81 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF766-201 - 468 2.7e-16 59.4 41.7 2 8 0.0022 1.4 9.1 0.1 6 19 243 256 242 265 0.84 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF766-201 - 468 2.7e-16 59.4 41.7 3 8 6.7e-07 0.00041 20.4 1.4 6 34 271 306 270 309 0.90 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF766-201 - 468 2.7e-16 59.4 41.7 4 8 0.001 0.64 10.2 5.9 6 37 327 365 326 368 0.79 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF766-201 - 468 2.7e-16 59.4 41.7 5 8 0.0006 0.37 10.9 5.6 6 34 355 390 354 395 0.89 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF766-201 - 468 2.7e-16 59.4 41.7 6 8 7.7e-06 0.0047 17.0 4.1 6 34 383 418 382 418 0.93 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF766-201 - 468 2.7e-16 59.4 41.7 7 8 2e-05 0.013 15.6 2.9 6 34 411 446 410 451 0.91 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF766-201 - 468 2.7e-16 59.4 41.7 8 8 0.016 10 6.4 0.2 6 16 439 449 438 458 0.88 Zinc ribbon domain zf-C2H2_11 PF16622.5 29 ZNF766-201 - 468 1.6e-10 40.5 36.6 1 9 1.4 8.4e+02 -0.1 0.5 6 11 216 221 215 223 0.89 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF766-201 - 468 1.6e-10 40.5 36.6 2 9 0.034 21 5.0 0.0 5 23 243 261 240 264 0.89 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF766-201 - 468 1.6e-10 40.5 36.6 3 9 0.0005 0.31 10.9 0.1 3 26 269 292 267 293 0.90 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF766-201 - 468 1.6e-10 40.5 36.6 4 9 5.4e-05 0.033 13.9 0.2 5 26 299 320 296 321 0.94 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF766-201 - 468 1.6e-10 40.5 36.6 5 9 0.00021 0.13 12.1 1.2 5 26 327 348 326 349 0.94 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF766-201 - 468 1.6e-10 40.5 36.6 6 9 0.75 4.7e+02 0.7 0.1 5 23 355 373 352 375 0.80 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF766-201 - 468 1.6e-10 40.5 36.6 7 9 0.00084 0.52 10.1 0.4 5 26 383 404 380 405 0.91 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF766-201 - 468 1.6e-10 40.5 36.6 8 9 0.004 2.5 8.0 0.1 5 26 411 432 408 433 0.90 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF766-201 - 468 1.6e-10 40.5 36.6 9 9 2.6 1.6e+03 -1.0 0.2 5 14 439 448 437 452 0.83 zinc-finger C2H2-type zf-C2H2_6 PF13912.6 27 ZNF766-201 - 468 9e-10 38.3 78.3 1 11 5.2 3.2e+03 -1.7 0.1 2 11 187 196 187 197 0.80 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF766-201 - 468 9e-10 38.3 78.3 2 11 0.2 1.2e+02 2.8 0.6 3 10 216 223 216 223 0.90 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF766-201 - 468 9e-10 38.3 78.3 3 11 0.00024 0.15 12.1 0.4 2 14 243 255 243 266 0.85 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF766-201 - 468 9e-10 38.3 78.3 4 11 2.8e-05 0.018 15.1 0.5 2 24 271 293 271 296 0.84 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF766-201 - 468 9e-10 38.3 78.3 5 11 0.0047 2.9 8.0 1.9 2 13 299 310 299 311 0.96 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF766-201 - 468 9e-10 38.3 78.3 6 11 0.0011 0.68 10.0 2.0 2 21 327 346 326 349 0.89 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF766-201 - 468 9e-10 38.3 78.3 7 11 0.0018 1.1 9.3 2.7 2 24 355 377 355 380 0.85 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF766-201 - 468 9e-10 38.3 78.3 8 11 0.011 6.7 6.8 4.8 2 12 383 393 383 404 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF766-201 - 468 9e-10 38.3 78.3 9 11 0.0009 0.55 10.3 0.9 2 12 411 421 411 422 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF766-201 - 468 9e-10 38.3 78.3 10 11 5.4 3.3e+03 -1.8 0.1 19 26 424 431 423 432 0.82 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF766-201 - 468 9e-10 38.3 78.3 11 11 0.001 0.64 10.1 1.8 2 12 439 449 439 450 0.94 C2H2-type zinc finger C1_1 PF00130.22 53 ZNF766-201 - 468 2.6e-08 33.6 38.9 1 8 0.0088 5.5 7.0 0.2 1 22 205 225 205 231 0.74 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF766-201 - 468 2.6e-08 33.6 38.9 2 8 1.3e-05 0.0083 16.0 0.5 2 37 233 279 233 290 0.89 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF766-201 - 468 2.6e-08 33.6 38.9 3 8 0.026 16 5.5 5.7 4 35 292 333 288 335 0.83 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF766-201 - 468 2.6e-08 33.6 38.9 4 8 0.0071 4.4 7.3 0.5 2 24 317 339 316 346 0.86 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF766-201 - 468 2.6e-08 33.6 38.9 5 8 0.0027 1.7 8.6 2.6 5 37 349 391 345 394 0.82 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF766-201 - 468 2.6e-08 33.6 38.9 6 8 0.0031 1.9 8.4 2.3 6 37 377 419 366 423 0.79 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF766-201 - 468 2.6e-08 33.6 38.9 7 8 0.0023 1.4 8.9 2.6 6 38 406 448 401 452 0.82 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF766-201 - 468 2.6e-08 33.6 38.9 8 8 0.063 39 4.2 0.5 5 22 433 453 425 460 0.71 Phorbol esters/diacylglycerol binding domain (C1 domain) XPA_N PF01286.18 32 ZNF766-201 - 468 7.6e-08 32.3 24.1 1 9 0.092 57 3.9 0.1 2 12 215 225 214 233 0.84 XPA protein N-terminal XPA_N PF01286.18 32 ZNF766-201 - 468 7.6e-08 32.3 24.1 2 9 0.022 14 5.9 0.0 3 12 244 253 242 261 0.84 XPA protein N-terminal XPA_N PF01286.18 32 ZNF766-201 - 468 7.6e-08 32.3 24.1 3 9 0.044 27 4.9 0.0 3 12 272 281 270 289 0.82 XPA protein N-terminal XPA_N PF01286.18 32 ZNF766-201 - 468 7.6e-08 32.3 24.1 4 9 0.091 56 3.9 0.0 3 17 300 314 298 320 0.74 XPA protein N-terminal XPA_N PF01286.18 32 ZNF766-201 - 468 7.6e-08 32.3 24.1 5 9 0.026 16 5.6 0.1 3 12 328 337 327 345 0.87 XPA protein N-terminal XPA_N PF01286.18 32 ZNF766-201 - 468 7.6e-08 32.3 24.1 6 9 0.026 16 5.6 0.5 3 12 356 365 354 368 0.88 XPA protein N-terminal XPA_N PF01286.18 32 ZNF766-201 - 468 7.6e-08 32.3 24.1 7 9 0.044 27 4.9 0.0 3 12 384 393 382 400 0.88 XPA protein N-terminal XPA_N PF01286.18 32 ZNF766-201 - 468 7.6e-08 32.3 24.1 8 9 0.03 19 5.4 0.1 3 12 412 421 410 429 0.81 XPA protein N-terminal XPA_N PF01286.18 32 ZNF766-201 - 468 7.6e-08 32.3 24.1 9 9 0.43 2.6e+02 1.7 0.0 3 14 440 451 438 457 0.79 XPA protein N-terminal zinc_ribbon_15 PF17032.5 86 ZNF766-201 - 468 1.4e-07 32.2 35.7 1 5 0.048 30 5.5 0.5 39 78 188 227 178 231 0.73 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF766-201 - 468 1.4e-07 32.2 35.7 2 5 0.00062 0.38 11.5 0.8 29 75 234 280 230 285 0.85 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF766-201 - 468 1.4e-07 32.2 35.7 3 5 0.00035 0.22 12.3 2.2 29 76 290 337 283 345 0.87 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF766-201 - 468 1.4e-07 32.2 35.7 4 5 0.00057 0.35 11.6 2.5 34 76 351 393 344 398 0.86 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF766-201 - 468 1.4e-07 32.2 35.7 5 5 0.0004 0.24 12.1 1.6 31 79 404 452 400 457 0.85 zinc-ribbon family # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF766-201.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF766-201.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF766-201.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF766-201.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF766-201.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:13:56 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZNF766-202 - 471 6.3e-59 193.9 73.4 1 10 0.51 3.4e+02 1.9 0.1 9 18 196 205 192 211 0.81 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF766-202 - 471 6.3e-59 193.9 73.4 2 10 0.022 15 6.3 0.7 5 23 220 238 217 239 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF766-202 - 471 6.3e-59 193.9 73.4 3 10 4.8e-07 0.00032 21.0 0.1 2 25 245 268 244 269 0.87 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF766-202 - 471 6.3e-59 193.9 73.4 4 10 5e-11 3.3e-08 33.6 0.8 2 25 273 296 272 297 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF766-202 - 471 6.3e-59 193.9 73.4 5 10 2.6e-09 1.8e-06 28.1 3.4 2 25 301 324 300 325 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF766-202 - 471 6.3e-59 193.9 73.4 6 10 4.6e-08 3e-05 24.2 0.5 2 25 329 352 328 352 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF766-202 - 471 6.3e-59 193.9 73.4 7 10 1.3e-10 8.4e-08 32.3 2.0 1 26 356 381 356 381 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF766-202 - 471 6.3e-59 193.9 73.4 8 10 3.3e-10 2.2e-07 31.0 1.7 2 25 385 408 384 409 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF766-202 - 471 6.3e-59 193.9 73.4 9 10 1.3e-11 8.4e-09 35.5 1.7 1 25 412 436 412 437 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF766-202 - 471 6.3e-59 193.9 73.4 10 10 3e-08 2e-05 24.8 2.2 1 21 440 460 440 462 0.93 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZNF766-202 - 471 1.9e-46 154.0 69.0 1 10 0.29 1.9e+02 2.8 0.0 7 23 208 224 202 224 0.79 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF766-202 - 471 1.9e-46 154.0 69.0 2 10 1.7e-05 0.011 16.1 0.1 2 21 231 250 231 251 0.95 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF766-202 - 471 1.9e-46 154.0 69.0 3 10 2.2e-06 0.0015 18.9 0.4 1 23 258 280 258 280 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF766-202 - 471 1.9e-46 154.0 69.0 4 10 1.3e-08 8.6e-06 25.9 0.8 1 23 286 308 286 308 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF766-202 - 471 1.9e-46 154.0 69.0 5 10 1.7e-07 0.00012 22.4 1.8 1 23 314 336 314 336 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF766-202 - 471 1.9e-46 154.0 69.0 6 10 4.2e-07 0.00028 21.2 1.8 1 23 342 364 342 364 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF766-202 - 471 1.9e-46 154.0 69.0 7 10 6.7e-08 4.5e-05 23.7 4.3 1 23 370 392 370 392 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF766-202 - 471 1.9e-46 154.0 69.0 8 10 3.8e-09 2.5e-06 27.6 3.2 1 23 398 420 398 420 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF766-202 - 471 1.9e-46 154.0 69.0 9 10 4.3e-10 2.9e-07 30.6 1.5 1 23 426 448 426 448 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF766-202 - 471 1.9e-46 154.0 69.0 10 10 0.064 42 4.9 0.2 1 9 454 462 454 463 0.88 Zinc finger, C2H2 type KRAB PF01352.27 42 ZNF766-202 - 471 1.7e-26 91.5 0.1 1 1 4.8e-29 3.2e-26 90.7 0.1 2 42 24 64 23 64 0.98 KRAB box zf-C2H2_4 PF13894.6 24 ZNF766-202 - 471 6.5e-26 88.8 65.2 1 10 4.9 3.3e+03 -0.5 0.0 7 23 208 224 202 225 0.77 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF766-202 - 471 6.5e-26 88.8 65.2 2 10 0.001 0.67 11.0 0.1 2 21 231 250 230 252 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF766-202 - 471 6.5e-26 88.8 65.2 3 10 5.1e-05 0.034 15.0 0.4 1 23 258 280 258 281 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF766-202 - 471 6.5e-26 88.8 65.2 4 10 4.4e-06 0.0029 18.3 0.6 1 23 286 308 286 309 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF766-202 - 471 6.5e-26 88.8 65.2 5 10 9.8e-06 0.0065 17.2 1.8 1 23 314 336 314 337 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF766-202 - 471 6.5e-26 88.8 65.2 6 10 2e-05 0.013 16.2 1.4 1 23 342 364 342 365 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF766-202 - 471 6.5e-26 88.8 65.2 7 10 0.00048 0.32 12.0 3.1 1 23 370 392 370 393 0.97 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF766-202 - 471 6.5e-26 88.8 65.2 8 10 9.7e-06 0.0065 17.2 2.9 1 23 398 420 398 421 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF766-202 - 471 6.5e-26 88.8 65.2 9 10 7.3e-06 0.0048 17.6 1.0 1 23 426 448 426 449 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF766-202 - 471 6.5e-26 88.8 65.2 10 10 0.36 2.4e+02 3.0 0.1 1 10 454 463 454 468 0.80 C2H2-type zinc finger Zn-ribbon_8 PF09723.10 40 ZNF766-202 - 471 2e-16 59.8 39.2 1 7 0.00054 0.36 11.0 0.4 6 37 202 240 201 242 0.81 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF766-202 - 471 2e-16 59.8 39.2 2 7 0.0021 1.4 9.1 0.1 6 19 258 271 257 280 0.84 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF766-202 - 471 2e-16 59.8 39.2 3 7 6.3e-07 0.00042 20.4 1.4 6 34 286 321 285 324 0.90 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF766-202 - 471 2e-16 59.8 39.2 4 7 0.00085 0.56 10.4 5.7 6 37 342 380 341 383 0.79 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF766-202 - 471 2e-16 59.8 39.2 5 7 0.0016 1 9.5 6.3 6 34 370 405 369 407 0.92 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF766-202 - 471 2e-16 59.8 39.2 6 7 0.00046 0.3 11.2 0.4 6 20 398 412 397 423 0.80 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF766-202 - 471 2e-16 59.8 39.2 7 7 9.5e-06 0.0063 16.6 1.0 6 33 426 460 425 463 0.92 Zinc ribbon domain zf-C2H2_11 PF16622.5 29 ZNF766-202 - 471 1.6e-10 40.6 37.0 1 9 1.3 8.5e+02 -0.2 0.5 6 11 231 236 230 238 0.89 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF766-202 - 471 1.6e-10 40.6 37.0 2 9 0.032 21 5.0 0.0 5 23 258 276 255 279 0.89 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF766-202 - 471 1.6e-10 40.6 37.0 3 9 0.00047 0.31 10.8 0.1 3 26 284 307 282 308 0.90 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF766-202 - 471 1.6e-10 40.6 37.0 4 9 5e-05 0.033 13.9 0.2 5 26 314 335 311 336 0.94 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF766-202 - 471 1.6e-10 40.6 37.0 5 9 0.00019 0.13 12.1 1.2 5 26 342 363 341 364 0.94 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF766-202 - 471 1.6e-10 40.6 37.0 6 9 0.71 4.7e+02 0.7 0.1 5 23 370 388 367 390 0.80 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF766-202 - 471 1.6e-10 40.6 37.0 7 9 0.00079 0.53 10.1 0.4 5 26 398 419 395 420 0.91 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF766-202 - 471 1.6e-10 40.6 37.0 8 9 0.0037 2.5 7.9 0.1 5 26 426 447 423 448 0.90 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF766-202 - 471 1.6e-10 40.6 37.0 9 9 1.5 9.7e+02 -0.3 0.2 5 12 454 461 452 463 0.88 zinc-finger C2H2-type zf-C2H2_6 PF13912.6 27 ZNF766-202 - 471 1.4e-09 37.7 72.7 1 11 4.9 3.2e+03 -1.7 0.1 2 11 202 211 202 212 0.80 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF766-202 - 471 1.4e-09 37.7 72.7 2 11 0.19 1.3e+02 2.8 0.6 3 10 231 238 231 238 0.90 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF766-202 - 471 1.4e-09 37.7 72.7 3 11 0.00022 0.15 12.1 0.4 2 14 258 270 258 281 0.85 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF766-202 - 471 1.4e-09 37.7 72.7 4 11 2.7e-05 0.018 15.1 0.5 2 24 286 308 286 311 0.84 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF766-202 - 471 1.4e-09 37.7 72.7 5 11 0.0044 2.9 8.0 1.9 2 13 314 325 314 326 0.96 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF766-202 - 471 1.4e-09 37.7 72.7 6 11 0.001 0.69 10.0 2.0 2 21 342 361 341 364 0.89 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF766-202 - 471 1.4e-09 37.7 72.7 7 11 0.0017 1.1 9.3 2.7 2 24 370 392 370 395 0.85 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF766-202 - 471 1.4e-09 37.7 72.7 8 11 0.01 6.8 6.8 4.8 2 12 398 408 398 419 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF766-202 - 471 1.4e-09 37.7 72.7 9 11 0.00084 0.56 10.3 0.9 2 12 426 436 426 437 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF766-202 - 471 1.4e-09 37.7 72.7 10 11 5 3.3e+03 -1.8 0.1 19 26 439 446 438 447 0.82 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF766-202 - 471 1.4e-09 37.7 72.7 11 11 0.022 15 5.7 0.1 2 15 454 467 454 468 0.84 C2H2-type zinc finger C1_1 PF00130.22 53 ZNF766-202 - 471 3.4e-08 33.2 38.5 1 7 0.0083 5.5 7.0 0.2 1 22 220 240 220 246 0.74 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF766-202 - 471 3.4e-08 33.2 38.5 2 7 1.6e-05 0.01 15.7 0.8 2 37 248 294 248 297 0.87 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF766-202 - 471 3.4e-08 33.2 38.5 3 7 0.03 20 5.2 0.1 5 22 280 296 276 305 0.75 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF766-202 - 471 3.4e-08 33.2 38.5 4 7 0.035 23 4.9 6.6 4 36 307 349 304 351 0.82 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF766-202 - 471 3.4e-08 33.2 38.5 5 7 0.12 79 3.3 9.7 2 38 332 379 331 409 0.62 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF766-202 - 471 3.4e-08 33.2 38.5 6 7 0.0064 4.3 7.3 3.1 6 37 392 434 381 435 0.78 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF766-202 - 471 3.4e-08 33.2 38.5 7 7 0.0011 0.75 9.7 1.4 6 36 421 461 416 465 0.82 Phorbol esters/diacylglycerol binding domain (C1 domain) zinc_ribbon_15 PF17032.5 86 ZNF766-202 - 471 7.5e-07 29.8 35.3 1 5 0.043 29 5.5 0.5 39 78 203 242 193 248 0.74 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF766-202 - 471 7.5e-07 29.8 35.3 2 5 0.00059 0.39 11.5 0.8 29 75 249 295 245 300 0.85 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF766-202 - 471 7.5e-07 29.8 35.3 3 5 0.00034 0.23 12.2 2.1 29 76 305 352 298 357 0.87 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF766-202 - 471 7.5e-07 29.8 35.3 4 5 0.0005 0.33 11.7 2.5 34 77 366 409 358 415 0.87 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF766-202 - 471 7.5e-07 29.8 35.3 5 5 0.0024 1.6 9.5 1.4 31 73 419 461 414 467 0.86 zinc-ribbon family # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF766-202.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF766-202.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF766-202.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF766-202.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF766-202.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:13:57 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF766-203.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF766-203.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF766-203.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF766-203.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF766-203.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:13:57 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF766-204.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF766-204.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF766-204.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF766-204.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF766-204.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:13:58 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF766-205.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF766-205.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF766-205.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF766-205.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF766-205.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:13:58 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- KRAB PF01352.27 42 ZNF766-206 - 105 1.9e-27 94.6 0.1 1 1 1.4e-31 2.6e-27 94.2 0.1 2 42 9 49 8 49 0.98 KRAB box # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF766-206.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF766-206.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF766-206.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF766-206.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF766-206.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:13:58 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF766-207.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF766-207.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF766-207.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF766-207.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF766-207.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:13:59 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- KRAB PF01352.27 42 ZNF766-208 - 100 1.7e-27 94.8 0.1 1 1 1.3e-31 2.3e-27 94.3 0.1 2 42 4 44 3 44 0.98 KRAB box # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF766-208.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF766-208.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF766-208.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF766-208.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF766-208.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:13:59 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF766-209.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF766-209.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF766-209.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF766-209.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF766-209.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:13:59 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-C2H2 PF00096.26 23 ZNF768-201 - 540 1.9e-65 213.8 68.3 1 10 1.2e-06 0.00075 19.8 0.1 3 23 263 283 262 283 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF768-201 - 540 1.9e-65 213.8 68.3 2 10 1.4e-09 8.7e-07 29.1 0.9 1 23 289 311 289 311 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF768-201 - 540 1.9e-65 213.8 68.3 3 10 2.9e-09 1.8e-06 28.1 0.9 1 23 317 339 317 339 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF768-201 - 540 1.9e-65 213.8 68.3 4 10 3.8e-09 2.3e-06 27.7 2.0 1 23 345 367 345 367 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF768-201 - 540 1.9e-65 213.8 68.3 5 10 3e-08 1.9e-05 24.9 3.5 1 23 373 395 373 395 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF768-201 - 540 1.9e-65 213.8 68.3 6 10 5.9e-07 0.00036 20.8 0.1 1 23 401 423 401 423 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF768-201 - 540 1.9e-65 213.8 68.3 7 10 3.4e-07 0.00021 21.6 0.1 1 23 429 451 429 451 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF768-201 - 540 1.9e-65 213.8 68.3 8 10 5.3e-10 3.3e-07 30.4 1.0 1 23 457 479 457 479 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF768-201 - 540 1.9e-65 213.8 68.3 9 10 1.1e-06 0.00069 19.9 3.8 1 23 485 507 485 507 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF768-201 - 540 1.9e-65 213.8 68.3 10 10 8.1e-11 5e-08 33.0 0.6 1 23 513 535 513 535 0.99 Zinc finger, C2H2 type zf-H2C2_2 PF13465.6 26 ZNF768-201 - 540 3e-63 207.6 62.0 1 11 2 1.3e+03 0.1 0.1 17 25 263 271 263 272 0.86 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF768-201 - 540 3e-63 207.6 62.0 2 11 2.5e-11 1.5e-08 34.7 0.3 3 25 277 299 276 300 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF768-201 - 540 3e-63 207.6 62.0 3 11 2.6e-11 1.6e-08 34.6 0.4 2 25 304 327 303 328 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF768-201 - 540 3e-63 207.6 62.0 4 11 4.4e-11 2.7e-08 33.9 1.7 2 25 332 355 331 356 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF768-201 - 540 3e-63 207.6 62.0 5 11 1.8e-05 0.011 16.1 4.6 2 25 360 383 359 384 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF768-201 - 540 3e-63 207.6 62.0 6 11 1.2e-09 7.5e-07 29.3 0.1 1 25 387 411 387 412 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF768-201 - 540 3e-63 207.6 62.0 7 11 5.3e-08 3.3e-05 24.1 0.4 5 25 419 439 415 440 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF768-201 - 540 3e-63 207.6 62.0 8 11 1.1e-05 0.0068 16.8 0.1 5 25 447 467 444 468 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF768-201 - 540 3e-63 207.6 62.0 9 11 7.1e-09 4.4e-06 26.9 0.2 3 24 473 494 472 494 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF768-201 - 540 3e-63 207.6 62.0 10 11 4.1e-09 2.5e-06 27.6 0.5 4 25 502 523 500 524 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF768-201 - 540 3e-63 207.6 62.0 11 11 1.6 9.9e+02 0.5 0.2 1 9 527 535 527 536 0.89 Zinc-finger double domain zf-C2H2_4 PF13894.6 24 ZNF768-201 - 540 1.4e-42 140.6 64.0 1 10 0.00016 0.1 13.5 0.1 2 23 262 283 261 284 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF768-201 - 540 1.4e-42 140.6 64.0 2 10 1.2e-06 0.00071 20.2 0.9 1 23 289 311 289 312 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF768-201 - 540 1.4e-42 140.6 64.0 3 10 3.7e-07 0.00023 21.8 0.7 1 23 317 339 317 340 0.97 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF768-201 - 540 1.4e-42 140.6 64.0 4 10 1.6e-07 9.9e-05 22.9 1.5 1 23 345 367 345 368 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF768-201 - 540 1.4e-42 140.6 64.0 5 10 8.4e-05 0.052 14.4 3.0 1 23 373 395 373 396 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF768-201 - 540 1.4e-42 140.6 64.0 6 10 2e-05 0.012 16.4 0.1 1 23 401 423 401 424 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF768-201 - 540 1.4e-42 140.6 64.0 7 10 3e-05 0.018 15.8 0.2 1 23 429 451 429 452 0.86 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF768-201 - 540 1.4e-42 140.6 64.0 8 10 1e-06 0.00062 20.4 0.6 1 23 457 479 457 480 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF768-201 - 540 1.4e-42 140.6 64.0 9 10 0.00016 0.096 13.6 3.6 1 23 485 507 485 508 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF768-201 - 540 1.4e-42 140.6 64.0 10 10 6e-07 0.00037 21.1 0.2 1 23 513 535 513 536 0.96 C2H2-type zinc finger zf-C2H2_jaz PF12171.8 27 ZNF768-201 - 540 5.4e-19 68.0 32.4 1 10 0.038 24 5.4 0.0 3 22 262 281 260 281 0.91 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF768-201 - 540 5.4e-19 68.0 32.4 2 10 0.00017 0.11 12.9 0.8 2 24 289 311 288 311 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF768-201 - 540 5.4e-19 68.0 32.4 3 10 0.0079 4.9 7.6 0.1 2 24 317 339 316 340 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF768-201 - 540 5.4e-19 68.0 32.4 4 10 6e-06 0.0037 17.5 0.6 2 26 345 369 344 369 0.97 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF768-201 - 540 5.4e-19 68.0 32.4 5 10 0.5 3.1e+02 1.8 0.4 2 22 373 393 372 393 0.88 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF768-201 - 540 5.4e-19 68.0 32.4 6 10 0.12 74 3.8 0.0 2 17 401 416 400 424 0.78 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF768-201 - 540 5.4e-19 68.0 32.4 7 10 0.046 29 5.1 0.0 2 18 429 445 428 451 0.79 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF768-201 - 540 5.4e-19 68.0 32.4 8 10 1.1e-05 0.0065 16.7 0.2 2 24 457 479 456 479 0.95 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF768-201 - 540 5.4e-19 68.0 32.4 9 10 0.053 33 4.9 0.1 2 20 485 503 484 504 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF768-201 - 540 5.4e-19 68.0 32.4 10 10 0.0057 3.5 8.0 0.1 2 24 513 535 512 536 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_6 PF13912.6 27 ZNF768-201 - 540 5.2e-12 45.4 57.6 1 10 0.0021 1.3 9.1 0.1 3 24 262 283 262 286 0.87 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF768-201 - 540 5.2e-12 45.4 57.6 2 10 5.9e-05 0.036 14.1 1.1 2 24 289 311 289 314 0.95 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF768-201 - 540 5.2e-12 45.4 57.6 3 10 0.094 58 3.8 0.2 2 11 317 326 317 331 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF768-201 - 540 5.2e-12 45.4 57.6 4 10 0.064 39 4.4 0.4 2 12 345 355 345 359 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF768-201 - 540 5.2e-12 45.4 57.6 5 10 0.15 96 3.2 3.9 2 24 373 395 373 398 0.87 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF768-201 - 540 5.2e-12 45.4 57.6 6 10 0.001 0.62 10.1 0.2 2 25 401 424 401 426 0.90 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF768-201 - 540 5.2e-12 45.4 57.6 7 10 0.00052 0.32 11.0 0.1 2 13 429 440 429 453 0.74 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF768-201 - 540 5.2e-12 45.4 57.6 8 10 0.0017 1.1 9.4 0.4 2 24 457 479 456 482 0.92 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF768-201 - 540 5.2e-12 45.4 57.6 9 10 0.064 40 4.4 1.3 2 11 485 494 485 496 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF768-201 - 540 5.2e-12 45.4 57.6 10 10 0.00078 0.48 10.5 0.2 2 24 513 535 513 537 0.95 C2H2-type zinc finger zf-met PF12874.7 25 ZNF768-201 - 540 8.7e-10 38.7 56.4 1 10 0.0084 5.2 7.6 0.0 3 21 263 281 262 284 0.91 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF768-201 - 540 8.7e-10 38.7 56.4 2 10 0.0019 1.2 9.6 1.2 1 21 289 309 289 312 0.91 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF768-201 - 540 8.7e-10 38.7 56.4 3 10 0.05 31 5.1 0.1 1 21 317 337 317 339 0.92 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF768-201 - 540 8.7e-10 38.7 56.4 4 10 0.22 1.4e+02 3.1 1.8 1 25 345 369 345 369 0.93 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF768-201 - 540 8.7e-10 38.7 56.4 5 10 0.69 4.3e+02 1.5 3.5 1 21 373 393 373 395 0.93 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF768-201 - 540 8.7e-10 38.7 56.4 6 10 0.00024 0.15 12.5 0.1 1 23 401 423 401 424 0.94 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF768-201 - 540 8.7e-10 38.7 56.4 7 10 0.54 3.4e+02 1.8 0.1 1 20 429 448 429 451 0.85 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF768-201 - 540 8.7e-10 38.7 56.4 8 10 1.1e-05 0.007 16.7 0.4 1 23 457 479 457 480 0.95 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF768-201 - 540 8.7e-10 38.7 56.4 9 10 0.0019 1.2 9.7 1.4 1 19 485 503 485 507 0.94 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF768-201 - 540 8.7e-10 38.7 56.4 10 10 0.11 66 4.1 0.2 1 21 513 533 513 536 0.91 Zinc-finger of C2H2 type zf_UBZ PF18439.1 32 ZNF768-201 - 540 1.1e-09 37.7 36.6 1 10 1.3 8.2e+02 -0.3 0.1 4 12 262 270 261 280 0.83 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF768-201 - 540 1.1e-09 37.7 36.6 2 10 0.058 36 4.1 0.2 3 21 289 308 287 308 0.87 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF768-201 - 540 1.1e-09 37.7 36.6 3 10 0.001 0.62 9.7 0.0 3 15 317 329 315 336 0.83 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF768-201 - 540 1.1e-09 37.7 36.6 4 10 0.025 15 5.2 0.1 3 12 345 354 343 364 0.82 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF768-201 - 540 1.1e-09 37.7 36.6 5 10 0.0041 2.5 7.7 0.7 3 21 373 392 371 392 0.92 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF768-201 - 540 1.1e-09 37.7 36.6 6 10 0.11 67 3.2 0.1 3 14 401 412 399 419 0.86 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF768-201 - 540 1.1e-09 37.7 36.6 7 10 0.0061 3.7 7.2 0.1 3 12 429 438 427 444 0.83 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF768-201 - 540 1.1e-09 37.7 36.6 8 10 0.00042 0.26 10.9 0.1 2 20 456 475 455 476 0.84 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF768-201 - 540 1.1e-09 37.7 36.6 9 10 1.3 8.1e+02 -0.3 0.4 3 12 485 494 484 504 0.73 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF768-201 - 540 1.1e-09 37.7 36.6 10 10 0.00098 0.6 9.7 0.1 3 20 513 531 511 532 0.86 Ubiquitin-Binding Zinc Finger RNA_pol_Rpb1_R PF05001.13 14 ZNF768-201 - 540 1.6e-09 37.6 23.0 1 5 0.0016 1 9.9 0.1 2 13 60 71 60 72 0.92 RNA polymerase Rpb1 C-terminal repeat RNA_pol_Rpb1_R PF05001.13 14 ZNF768-201 - 540 1.6e-09 37.6 23.0 2 5 0.0033 2.1 8.9 0.0 2 14 74 86 74 86 0.96 RNA polymerase Rpb1 C-terminal repeat RNA_pol_Rpb1_R PF05001.13 14 ZNF768-201 - 540 1.6e-09 37.6 23.0 3 5 0.055 34 5.0 1.0 2 12 95 105 95 106 0.94 RNA polymerase Rpb1 C-terminal repeat RNA_pol_Rpb1_R PF05001.13 14 ZNF768-201 - 540 1.6e-09 37.6 23.0 4 5 0.00049 0.3 11.5 0.5 4 14 118 128 117 128 0.95 RNA polymerase Rpb1 C-terminal repeat RNA_pol_Rpb1_R PF05001.13 14 ZNF768-201 - 540 1.6e-09 37.6 23.0 5 5 7.5e-05 0.046 14.1 1.8 2 14 130 142 130 142 0.96 RNA polymerase Rpb1 C-terminal repeat zf-Di19 PF05605.12 54 ZNF768-201 - 540 4.1e-09 36.6 36.9 1 7 0.0008 0.49 10.7 0.2 5 50 263 309 259 313 0.77 Drought induced 19 protein (Di19), zinc-binding zf-Di19 PF05605.12 54 ZNF768-201 - 540 4.1e-09 36.6 36.9 2 7 0.0042 2.6 8.4 0.1 3 28 317 342 315 345 0.72 Drought induced 19 protein (Di19), zinc-binding zf-Di19 PF05605.12 54 ZNF768-201 - 540 4.1e-09 36.6 36.9 3 7 0.00099 0.61 10.4 5.6 3 42 345 383 343 397 0.66 Drought induced 19 protein (Di19), zinc-binding zf-Di19 PF05605.12 54 ZNF768-201 - 540 4.1e-09 36.6 36.9 4 7 0.059 36 4.7 1.5 3 43 373 412 371 425 0.70 Drought induced 19 protein (Di19), zinc-binding zf-Di19 PF05605.12 54 ZNF768-201 - 540 4.1e-09 36.6 36.9 5 7 0.00053 0.33 11.3 0.4 3 44 401 441 399 452 0.75 Drought induced 19 protein (Di19), zinc-binding zf-Di19 PF05605.12 54 ZNF768-201 - 540 4.1e-09 36.6 36.9 6 7 0.00021 0.13 12.6 3.3 2 40 456 493 455 509 0.72 Drought induced 19 protein (Di19), zinc-binding zf-Di19 PF05605.12 54 ZNF768-201 - 540 4.1e-09 36.6 36.9 7 7 0.058 36 4.8 3.0 3 50 485 533 483 537 0.78 Drought induced 19 protein (Di19), zinc-binding Zn-ribbon_8 PF09723.10 40 ZNF768-201 - 540 5.9e-09 35.9 40.1 1 8 0.093 58 3.9 1.3 8 34 263 296 256 300 0.80 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF768-201 - 540 5.9e-09 35.9 40.1 2 8 8.5e-05 0.053 13.7 2.2 6 34 289 324 288 329 0.91 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF768-201 - 540 5.9e-09 35.9 40.1 3 8 4.7e-06 0.0029 17.7 1.5 6 34 317 352 316 355 0.90 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF768-201 - 540 5.9e-09 35.9 40.1 4 8 0.013 8.3 6.6 6.1 6 34 345 380 344 385 0.88 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF768-201 - 540 5.9e-09 35.9 40.1 5 8 0.4 2.4e+02 1.9 1.4 6 16 373 383 372 393 0.79 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF768-201 - 540 5.9e-09 35.9 40.1 6 8 0.00038 0.23 11.6 1.7 6 34 401 436 400 441 0.81 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF768-201 - 540 5.9e-09 35.9 40.1 7 8 0.00014 0.087 13.0 1.9 6 34 457 492 453 497 0.89 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF768-201 - 540 5.9e-09 35.9 40.1 8 8 0.0038 2.3 8.4 0.1 6 17 513 524 512 537 0.82 Zinc ribbon domain # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF768-201.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF768-201.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF768-201.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF768-201.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF768-201.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:14:00 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-C2H2 PF00096.26 23 ZNF768-202 - 509 9.4e-66 214.8 68.3 1 10 1.1e-06 0.00069 19.9 0.1 3 23 232 252 231 252 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF768-202 - 509 9.4e-66 214.8 68.3 2 10 1.3e-09 8.1e-07 29.2 0.9 1 23 258 280 258 280 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF768-202 - 509 9.4e-66 214.8 68.3 3 10 2.7e-09 1.7e-06 28.2 0.9 1 23 286 308 286 308 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF768-202 - 509 9.4e-66 214.8 68.3 4 10 3.5e-09 2.2e-06 27.8 2.0 1 23 314 336 314 336 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF768-202 - 509 9.4e-66 214.8 68.3 5 10 2.8e-08 1.7e-05 25.0 3.5 1 23 342 364 342 364 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF768-202 - 509 9.4e-66 214.8 68.3 6 10 5.5e-07 0.00034 20.9 0.1 1 23 370 392 370 392 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF768-202 - 509 9.4e-66 214.8 68.3 7 10 3.2e-07 0.0002 21.6 0.1 1 23 398 420 398 420 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF768-202 - 509 9.4e-66 214.8 68.3 8 10 5e-10 3.1e-07 30.5 1.0 1 23 426 448 426 448 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF768-202 - 509 9.4e-66 214.8 68.3 9 10 1e-06 0.00064 20.0 3.8 1 23 454 476 454 476 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF768-202 - 509 9.4e-66 214.8 68.3 10 10 7.5e-11 4.7e-08 33.1 0.6 1 23 482 504 482 504 0.99 Zinc finger, C2H2 type zf-H2C2_2 PF13465.6 26 ZNF768-202 - 509 1.5e-63 208.6 62.0 1 11 1.9 1.2e+03 0.2 0.1 17 25 232 240 232 241 0.86 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF768-202 - 509 1.5e-63 208.6 62.0 2 11 2.3e-11 1.4e-08 34.7 0.3 3 25 246 268 245 269 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF768-202 - 509 1.5e-63 208.6 62.0 3 11 2.5e-11 1.5e-08 34.7 0.4 2 25 273 296 272 297 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF768-202 - 509 1.5e-63 208.6 62.0 4 11 4.1e-11 2.5e-08 34.0 1.7 2 25 301 324 300 325 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF768-202 - 509 1.5e-63 208.6 62.0 5 11 1.7e-05 0.01 16.2 4.6 2 25 329 352 328 353 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF768-202 - 509 1.5e-63 208.6 62.0 6 11 1.1e-09 7e-07 29.4 0.1 1 25 356 380 356 381 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF768-202 - 509 1.5e-63 208.6 62.0 7 11 4.9e-08 3e-05 24.2 0.4 5 25 388 408 384 409 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF768-202 - 509 1.5e-63 208.6 62.0 8 11 1e-05 0.0063 16.9 0.1 5 25 416 436 413 437 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF768-202 - 509 1.5e-63 208.6 62.0 9 11 6.6e-09 4.1e-06 27.0 0.2 3 24 442 463 441 463 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF768-202 - 509 1.5e-63 208.6 62.0 10 11 3.8e-09 2.4e-06 27.7 0.5 4 25 471 492 469 493 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF768-202 - 509 1.5e-63 208.6 62.0 11 11 1.5 9.3e+02 0.6 0.2 1 9 496 504 496 505 0.89 Zinc-finger double domain zf-C2H2_4 PF13894.6 24 ZNF768-202 - 509 7e-43 141.6 64.0 1 10 0.00015 0.095 13.6 0.1 2 23 231 252 230 253 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF768-202 - 509 7e-43 141.6 64.0 2 10 1.1e-06 0.00066 20.3 0.9 1 23 258 280 258 281 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF768-202 - 509 7e-43 141.6 64.0 3 10 3.4e-07 0.00021 21.8 0.7 1 23 286 308 286 309 0.97 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF768-202 - 509 7e-43 141.6 64.0 4 10 1.5e-07 9.3e-05 23.0 1.5 1 23 314 336 314 337 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF768-202 - 509 7e-43 141.6 64.0 5 10 7.8e-05 0.048 14.5 3.0 1 23 342 364 342 365 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF768-202 - 509 7e-43 141.6 64.0 6 10 1.8e-05 0.011 16.5 0.1 1 23 370 392 370 393 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF768-202 - 509 7e-43 141.6 64.0 7 10 2.8e-05 0.017 15.9 0.2 1 23 398 420 398 421 0.86 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF768-202 - 509 7e-43 141.6 64.0 8 10 9.4e-07 0.00058 20.5 0.6 1 23 426 448 426 449 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF768-202 - 509 7e-43 141.6 64.0 9 10 0.00014 0.09 13.7 3.6 1 23 454 476 454 477 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF768-202 - 509 7e-43 141.6 64.0 10 10 5.6e-07 0.00035 21.2 0.2 1 23 482 504 482 505 0.96 C2H2-type zinc finger zf-C2H2_jaz PF12171.8 27 ZNF768-202 - 509 2.7e-19 68.9 32.4 1 10 0.036 22 5.5 0.0 3 22 231 250 229 250 0.91 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF768-202 - 509 2.7e-19 68.9 32.4 2 10 0.00016 0.099 13.0 0.8 2 24 258 280 257 280 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF768-202 - 509 2.7e-19 68.9 32.4 3 10 0.0074 4.5 7.7 0.1 2 24 286 308 285 309 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF768-202 - 509 2.7e-19 68.9 32.4 4 10 5.6e-06 0.0035 17.6 0.6 2 26 314 338 313 338 0.97 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF768-202 - 509 2.7e-19 68.9 32.4 5 10 0.46 2.9e+02 1.9 0.4 2 22 342 362 341 362 0.88 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF768-202 - 509 2.7e-19 68.9 32.4 6 10 0.11 69 3.9 0.0 2 17 370 385 369 393 0.78 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF768-202 - 509 2.7e-19 68.9 32.4 7 10 0.043 27 5.2 0.0 2 18 398 414 397 420 0.79 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF768-202 - 509 2.7e-19 68.9 32.4 8 10 9.9e-06 0.0061 16.8 0.2 2 24 426 448 425 448 0.95 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF768-202 - 509 2.7e-19 68.9 32.4 9 10 0.05 31 5.0 0.1 2 20 454 472 453 473 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF768-202 - 509 2.7e-19 68.9 32.4 10 10 0.0053 3.3 8.1 0.1 2 24 482 504 481 505 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_6 PF13912.6 27 ZNF768-202 - 509 2.6e-12 46.4 57.6 1 10 0.002 1.2 9.2 0.1 3 24 231 252 231 255 0.87 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF768-202 - 509 2.6e-12 46.4 57.6 2 10 5.5e-05 0.034 14.2 1.1 2 24 258 280 258 283 0.95 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF768-202 - 509 2.6e-12 46.4 57.6 3 10 0.088 55 3.9 0.2 2 11 286 295 286 300 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF768-202 - 509 2.6e-12 46.4 57.6 4 10 0.06 37 4.5 0.4 2 12 314 324 314 328 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF768-202 - 509 2.6e-12 46.4 57.6 5 10 0.14 89 3.2 3.9 2 24 342 364 342 367 0.87 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF768-202 - 509 2.6e-12 46.4 57.6 6 10 0.00094 0.58 10.2 0.2 2 25 370 393 370 395 0.90 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF768-202 - 509 2.6e-12 46.4 57.6 7 10 0.00048 0.3 11.1 0.1 2 13 398 409 398 422 0.74 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF768-202 - 509 2.6e-12 46.4 57.6 8 10 0.0016 0.99 9.5 0.4 2 24 426 448 425 451 0.92 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF768-202 - 509 2.6e-12 46.4 57.6 9 10 0.06 37 4.5 1.3 2 11 454 463 454 465 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF768-202 - 509 2.6e-12 46.4 57.6 10 10 0.00072 0.45 10.6 0.2 2 24 482 504 482 506 0.95 C2H2-type zinc finger zf-met PF12874.7 25 ZNF768-202 - 509 4.4e-10 39.6 56.4 1 10 0.0079 4.9 7.7 0.0 3 21 232 250 231 253 0.91 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF768-202 - 509 4.4e-10 39.6 56.4 2 10 0.0018 1.1 9.7 1.2 1 21 258 278 258 281 0.91 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF768-202 - 509 4.4e-10 39.6 56.4 3 10 0.047 29 5.2 0.1 1 21 286 306 286 308 0.92 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF768-202 - 509 4.4e-10 39.6 56.4 4 10 0.21 1.3e+02 3.2 1.8 1 25 314 338 314 338 0.93 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF768-202 - 509 4.4e-10 39.6 56.4 5 10 0.64 4e+02 1.6 3.5 1 21 342 362 342 364 0.93 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF768-202 - 509 4.4e-10 39.6 56.4 6 10 0.00022 0.14 12.6 0.1 1 23 370 392 370 393 0.94 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF768-202 - 509 4.4e-10 39.6 56.4 7 10 0.51 3.1e+02 1.9 0.1 1 20 398 417 398 420 0.85 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF768-202 - 509 4.4e-10 39.6 56.4 8 10 1.1e-05 0.0066 16.8 0.4 1 23 426 448 426 449 0.95 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF768-202 - 509 4.4e-10 39.6 56.4 9 10 0.0018 1.1 9.8 1.4 1 19 454 472 454 476 0.94 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF768-202 - 509 4.4e-10 39.6 56.4 10 10 0.1 62 4.2 0.2 1 21 482 502 482 505 0.91 Zinc-finger of C2H2 type zf_UBZ PF18439.1 32 ZNF768-202 - 509 5.9e-10 38.6 36.6 1 10 1.2 7.7e+02 -0.2 0.1 4 12 231 239 230 249 0.83 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF768-202 - 509 5.9e-10 38.6 36.6 2 10 0.054 33 4.2 0.2 3 21 258 277 256 277 0.87 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF768-202 - 509 5.9e-10 38.6 36.6 3 10 0.00093 0.58 9.8 0.0 3 15 286 298 284 305 0.83 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF768-202 - 509 5.9e-10 38.6 36.6 4 10 0.023 14 5.3 0.1 3 12 314 323 312 333 0.82 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF768-202 - 509 5.9e-10 38.6 36.6 5 10 0.0038 2.4 7.8 0.7 3 21 342 361 340 361 0.92 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF768-202 - 509 5.9e-10 38.6 36.6 6 10 0.1 63 3.3 0.1 3 14 370 381 368 388 0.86 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF768-202 - 509 5.9e-10 38.6 36.6 7 10 0.0057 3.5 7.3 0.1 3 12 398 407 396 413 0.83 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF768-202 - 509 5.9e-10 38.6 36.6 8 10 0.00039 0.24 11.0 0.1 2 20 425 444 424 445 0.84 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF768-202 - 509 5.9e-10 38.6 36.6 9 10 1.2 7.6e+02 -0.2 0.4 3 12 454 463 453 473 0.73 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF768-202 - 509 5.9e-10 38.6 36.6 10 10 0.00091 0.56 9.8 0.1 3 20 482 500 480 501 0.86 Ubiquitin-Binding Zinc Finger RNA_pol_Rpb1_R PF05001.13 14 ZNF768-202 - 509 1.2e-09 38.0 23.0 1 5 0.0015 0.93 10.0 0.1 2 13 29 40 29 41 0.92 RNA polymerase Rpb1 C-terminal repeat RNA_pol_Rpb1_R PF05001.13 14 ZNF768-202 - 509 1.2e-09 38.0 23.0 2 5 0.0031 1.9 9.0 0.0 2 14 43 55 43 55 0.96 RNA polymerase Rpb1 C-terminal repeat RNA_pol_Rpb1_R PF05001.13 14 ZNF768-202 - 509 1.2e-09 38.0 23.0 3 5 0.051 32 5.1 1.0 2 12 64 74 64 75 0.94 RNA polymerase Rpb1 C-terminal repeat RNA_pol_Rpb1_R PF05001.13 14 ZNF768-202 - 509 1.2e-09 38.0 23.0 4 5 0.00046 0.28 11.6 0.5 4 14 87 97 86 97 0.95 RNA polymerase Rpb1 C-terminal repeat RNA_pol_Rpb1_R PF05001.13 14 ZNF768-202 - 509 1.2e-09 38.0 23.0 5 5 7e-05 0.043 14.2 1.8 2 14 99 111 99 111 0.96 RNA polymerase Rpb1 C-terminal repeat zf-Di19 PF05605.12 54 ZNF768-202 - 509 2.7e-09 37.2 37.0 1 7 0.00074 0.46 10.8 0.2 5 50 232 278 228 282 0.77 Drought induced 19 protein (Di19), zinc-binding zf-Di19 PF05605.12 54 ZNF768-202 - 509 2.7e-09 37.2 37.0 2 7 0.0039 2.4 8.5 0.1 3 28 286 311 284 314 0.72 Drought induced 19 protein (Di19), zinc-binding zf-Di19 PF05605.12 54 ZNF768-202 - 509 2.7e-09 37.2 37.0 3 7 0.00096 0.6 10.5 5.6 3 42 314 352 312 366 0.66 Drought induced 19 protein (Di19), zinc-binding zf-Di19 PF05605.12 54 ZNF768-202 - 509 2.7e-09 37.2 37.0 4 7 0.055 34 4.8 1.5 3 43 342 381 340 394 0.70 Drought induced 19 protein (Di19), zinc-binding zf-Di19 PF05605.12 54 ZNF768-202 - 509 2.7e-09 37.2 37.0 5 7 0.00049 0.3 11.4 0.4 3 44 370 410 368 421 0.75 Drought induced 19 protein (Di19), zinc-binding zf-Di19 PF05605.12 54 ZNF768-202 - 509 2.7e-09 37.2 37.0 6 7 0.0002 0.12 12.7 3.3 2 40 425 462 424 478 0.72 Drought induced 19 protein (Di19), zinc-binding zf-Di19 PF05605.12 54 ZNF768-202 - 509 2.7e-09 37.2 37.0 7 7 0.055 34 4.8 3.0 3 50 454 502 452 506 0.78 Drought induced 19 protein (Di19), zinc-binding Zn-ribbon_8 PF09723.10 40 ZNF768-202 - 509 4.9e-09 36.2 40.5 1 8 0.076 47 4.2 1.1 8 34 232 265 231 270 0.76 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF768-202 - 509 4.9e-09 36.2 40.5 2 8 7.5e-05 0.047 13.8 2.1 6 34 258 293 257 297 0.91 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF768-202 - 509 4.9e-09 36.2 40.5 3 8 4.1e-06 0.0026 17.9 1.4 6 34 286 321 285 324 0.90 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF768-202 - 509 4.9e-09 36.2 40.5 4 8 0.015 9.5 6.4 6.5 6 34 314 349 313 356 0.88 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF768-202 - 509 4.9e-09 36.2 40.5 5 8 0.48 3e+02 1.6 1.9 6 15 342 351 339 362 0.80 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF768-202 - 509 4.9e-09 36.2 40.5 6 8 0.00035 0.22 11.7 1.7 6 34 370 405 369 410 0.81 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF768-202 - 509 4.9e-09 36.2 40.5 7 8 0.00016 0.097 12.8 2.1 6 34 426 461 425 466 0.89 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF768-202 - 509 4.9e-09 36.2 40.5 8 8 0.0035 2.2 8.5 0.1 6 17 482 493 481 506 0.81 Zinc ribbon domain # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF768-202.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF768-202.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF768-202.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF768-202.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF768-202.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:14:00 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-C2H2 PF00096.26 23 ZNF770-201 - 691 3.4e-39 131.1 110.9 1 14 9.1e-07 0.0012 19.1 1.6 1 23 27 49 27 49 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF770-201 - 691 3.4e-39 131.1 110.9 2 14 2.3e-07 0.00031 21.0 3.8 1 23 55 77 55 77 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF770-201 - 691 3.4e-39 131.1 110.9 3 14 1.6e-05 0.022 15.2 4.8 1 23 81 103 81 103 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF770-201 - 691 3.4e-39 131.1 110.9 4 14 5.5e-07 0.00076 19.8 0.6 1 23 160 182 160 182 0.94 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF770-201 - 691 3.4e-39 131.1 110.9 5 14 2.5e-07 0.00035 20.9 3.9 1 23 188 210 188 210 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF770-201 - 691 3.4e-39 131.1 110.9 6 14 0.0003 0.41 11.2 3.9 1 23 216 238 216 238 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF770-201 - 691 3.4e-39 131.1 110.9 7 14 0.0043 5.9 7.6 0.8 1 12 294 305 294 313 0.84 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF770-201 - 691 3.4e-39 131.1 110.9 8 14 5.5 7.6e+03 -2.2 0.1 10 17 326 333 325 334 0.85 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF770-201 - 691 3.4e-39 131.1 110.9 9 14 8.3 1.1e+04 -2.8 0.1 3 12 454 465 453 466 0.78 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF770-201 - 691 3.4e-39 131.1 110.9 10 14 5e-06 0.0068 16.8 1.6 2 23 476 497 475 497 0.94 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF770-201 - 691 3.4e-39 131.1 110.9 11 14 4.3e-08 5.9e-05 23.3 1.9 3 23 505 525 503 525 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF770-201 - 691 3.4e-39 131.1 110.9 12 14 10 1.4e+04 -3.1 0.1 6 19 535 548 534 548 0.85 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF770-201 - 691 3.4e-39 131.1 110.9 13 14 1e-07 0.00014 22.1 1.0 1 23 625 647 625 647 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF770-201 - 691 3.4e-39 131.1 110.9 14 14 1.3e-07 0.00018 21.8 1.5 1 23 653 675 653 675 0.98 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZNF770-201 - 691 8.1e-32 107.2 100.0 1 12 2.9e-05 0.04 14.7 1.3 1 23 27 49 27 50 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF770-201 - 691 8.1e-32 107.2 100.0 2 12 3.2e-05 0.044 14.6 3.6 1 23 55 77 55 78 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF770-201 - 691 8.1e-32 107.2 100.0 3 12 6.7e-05 0.092 13.6 3.7 1 23 81 103 81 104 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF770-201 - 691 8.1e-32 107.2 100.0 4 12 6.5e-07 0.0009 19.9 0.5 1 23 160 182 160 183 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF770-201 - 691 8.1e-32 107.2 100.0 5 12 6.4e-05 0.088 13.7 3.5 1 23 188 210 188 211 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF770-201 - 691 8.1e-32 107.2 100.0 6 12 0.00024 0.33 11.9 3.9 1 23 216 238 216 239 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF770-201 - 691 8.1e-32 107.2 100.0 7 12 0.0022 3.1 8.9 1.3 1 19 294 312 294 313 0.89 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF770-201 - 691 8.1e-32 107.2 100.0 8 12 2.9e-05 0.039 14.8 1.7 2 23 476 497 475 498 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF770-201 - 691 8.1e-32 107.2 100.0 9 12 2.9e-06 0.004 17.9 1.2 1 23 503 525 503 526 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF770-201 - 691 8.1e-32 107.2 100.0 10 12 0.63 8.7e+02 1.3 0.0 5 19 534 548 533 550 0.91 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF770-201 - 691 8.1e-32 107.2 100.0 11 12 4.1e-06 0.0057 17.4 0.7 1 23 625 647 625 648 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF770-201 - 691 8.1e-32 107.2 100.0 12 12 8.1e-06 0.011 16.5 2.3 1 23 653 675 653 676 0.96 C2H2-type zinc finger zf-H2C2_2 PF13465.6 26 ZNF770-201 - 691 2.3e-26 91.0 103.3 1 14 0.22 3.1e+02 2.1 0.7 13 25 25 37 22 38 0.86 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF770-201 - 691 2.3e-26 91.0 103.3 2 14 3e-10 4.2e-07 30.1 1.7 2 25 42 65 41 66 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF770-201 - 691 2.3e-26 91.0 103.3 3 14 0.0073 10 6.8 4.1 1 26 69 92 69 92 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF770-201 - 691 2.3e-26 91.0 103.3 4 14 0.038 53 4.5 0.1 12 24 157 169 150 171 0.85 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF770-201 - 691 2.3e-26 91.0 103.3 5 14 6.2e-09 8.5e-06 26.0 0.4 2 25 175 198 174 199 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF770-201 - 691 2.3e-26 91.0 103.3 6 14 0.00029 0.39 11.2 4.7 1 25 202 226 202 226 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF770-201 - 691 2.3e-26 91.0 103.3 7 14 1.7 2.4e+03 -0.7 0.4 2 13 231 242 230 245 0.79 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF770-201 - 691 2.3e-26 91.0 103.3 8 14 0.0011 1.5 9.4 1.1 14 25 293 304 283 305 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF770-201 - 691 2.3e-26 91.0 103.3 9 14 0.42 5.8e+02 1.2 1.6 16 24 476 484 469 486 0.84 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF770-201 - 691 2.3e-26 91.0 103.3 10 14 2.3e-07 0.00031 21.0 0.5 2 25 490 513 489 514 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF770-201 - 691 2.3e-26 91.0 103.3 11 14 0.0086 12 6.5 0.4 1 15 517 531 517 539 0.90 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF770-201 - 691 2.3e-26 91.0 103.3 12 14 0.0015 2.1 8.9 1.1 10 25 616 635 609 636 0.72 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF770-201 - 691 2.3e-26 91.0 103.3 13 14 2.1e-09 2.9e-06 27.5 0.4 2 25 640 663 639 664 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF770-201 - 691 2.3e-26 91.0 103.3 14 14 2.3 3.1e+03 -1.1 1.3 2 14 668 680 667 681 0.87 Zinc-finger double domain zf-C2H2_jaz PF12171.8 27 ZNF770-201 - 691 6.3e-11 42.3 68.1 1 12 0.026 36 4.8 0.3 2 21 27 46 26 47 0.91 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF770-201 - 691 6.3e-11 42.3 68.1 2 12 0.0052 7.2 7.0 0.3 2 18 55 71 54 78 0.74 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF770-201 - 691 6.3e-11 42.3 68.1 3 12 7.1e-06 0.0098 16.2 2.5 2 21 81 100 80 101 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF770-201 - 691 6.3e-11 42.3 68.1 4 12 4.3e-05 0.059 13.7 0.0 2 21 160 179 159 180 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF770-201 - 691 6.3e-11 42.3 68.1 5 12 0.0072 9.9 6.6 0.8 2 23 188 209 187 211 0.86 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF770-201 - 691 6.3e-11 42.3 68.1 6 12 0.037 51 4.3 3.2 2 21 216 235 215 236 0.88 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF770-201 - 691 6.3e-11 42.3 68.1 7 12 0.52 7.2e+02 0.7 1.4 2 20 294 312 293 312 0.88 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF770-201 - 691 6.3e-11 42.3 68.1 8 12 0.056 78 3.7 0.2 4 21 477 494 477 495 0.89 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF770-201 - 691 6.3e-11 42.3 68.1 9 12 0.0076 10 6.5 0.6 4 24 505 525 502 526 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF770-201 - 691 6.3e-11 42.3 68.1 10 12 1.4 2e+03 -0.8 0.1 6 20 534 548 533 548 0.91 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF770-201 - 691 6.3e-11 42.3 68.1 11 12 7.8e-05 0.11 12.8 0.0 2 21 625 644 624 645 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF770-201 - 691 6.3e-11 42.3 68.1 12 12 0.0056 7.8 6.9 0.2 2 21 653 672 652 675 0.83 Zinc-finger double-stranded RNA-binding # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF770-201.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF770-201.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF770-201.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF770-201.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF770-201.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:14:01 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF770-202.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF770-202.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF770-202.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF770-202.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF770-202.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:14:01 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZNF77-201 - 545 4.6e-83 270.3 146.5 1 16 0.0041 4.9 7.7 0.3 13 26 140 153 128 153 0.80 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF77-201 - 545 4.6e-83 270.3 146.5 2 16 0.11 1.3e+02 3.3 3.1 7 23 156 170 155 173 0.78 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF77-201 - 545 4.6e-83 270.3 146.5 3 16 1.6 1.9e+03 -0.5 0.2 6 17 181 192 181 194 0.87 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF77-201 - 545 4.6e-83 270.3 146.5 4 16 0.001 1.2 9.7 2.1 11 24 208 221 204 223 0.88 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF77-201 - 545 4.6e-83 270.3 146.5 5 16 2.3e-06 0.0027 18.0 2.9 2 24 227 249 226 249 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF77-201 - 545 4.6e-83 270.3 146.5 6 16 1.3e-12 1.6e-09 37.8 3.3 2 25 255 278 254 279 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF77-201 - 545 4.6e-83 270.3 146.5 7 16 4.1e-10 5e-07 29.9 6.8 2 25 283 306 282 307 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF77-201 - 545 4.6e-83 270.3 146.5 8 16 6.6e-08 7.9e-05 22.9 7.0 2 25 311 334 310 335 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF77-201 - 545 4.6e-83 270.3 146.5 9 16 7.1e-10 8.5e-07 29.1 1.1 1 25 338 362 338 363 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF77-201 - 545 4.6e-83 270.3 146.5 10 16 1.5e-12 1.8e-09 37.6 1.0 1 25 366 390 366 391 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF77-201 - 545 4.6e-83 270.3 146.5 11 16 7.2e-10 8.6e-07 29.1 2.4 2 25 395 418 394 419 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF77-201 - 545 4.6e-83 270.3 146.5 12 16 5.6e-11 6.7e-08 32.6 3.5 1 25 422 446 422 447 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF77-201 - 545 4.6e-83 270.3 146.5 13 16 1.7e-11 2e-08 34.3 1.1 1 26 450 475 450 475 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF77-201 - 545 4.6e-83 270.3 146.5 14 16 3.8e-09 4.6e-06 26.8 2.8 2 25 479 502 478 503 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF77-201 - 545 4.6e-83 270.3 146.5 15 16 1.3e-11 1.5e-08 34.6 1.2 1 25 506 530 506 531 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF77-201 - 545 4.6e-83 270.3 146.5 16 16 0.88 1.1e+03 0.4 0.1 1 9 534 542 534 544 0.85 Zinc-finger double domain zf-C2H2_4 PF13894.6 24 ZNF77-201 - 545 5.7e-46 151.2 141.3 1 14 0.56 6.7e+02 1.6 0.0 4 20 117 133 115 135 0.85 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF77-201 - 545 5.7e-46 151.2 141.3 2 14 0.069 83 4.4 0.4 2 14 143 155 142 158 0.82 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF77-201 - 545 5.7e-46 151.2 141.3 3 14 2.4e-06 0.0028 18.3 3.1 1 24 212 235 212 235 0.98 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF77-201 - 545 5.7e-46 151.2 141.3 4 14 3.1e-06 0.0037 18.0 2.4 1 23 240 262 240 263 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF77-201 - 545 5.7e-46 151.2 141.3 5 14 1.7e-06 0.0021 18.8 2.6 1 23 268 290 268 291 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF77-201 - 545 5.7e-46 151.2 141.3 6 14 1.6e-07 0.00019 22.0 6.0 1 23 296 318 296 319 0.97 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF77-201 - 545 5.7e-46 151.2 141.3 7 14 0.00059 0.7 10.9 6.8 2 23 325 346 324 347 0.87 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF77-201 - 545 5.7e-46 151.2 141.3 8 14 2.2e-07 0.00027 21.5 0.6 1 23 352 374 352 375 0.97 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF77-201 - 545 5.7e-46 151.2 141.3 9 14 7.8e-07 0.00093 19.8 2.7 1 23 380 402 380 403 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF77-201 - 545 5.7e-46 151.2 141.3 10 14 3.6e-06 0.0043 17.8 0.9 1 23 408 430 408 431 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF77-201 - 545 5.7e-46 151.2 141.3 11 14 1.1e-06 0.0013 19.3 6.8 1 23 436 458 436 459 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF77-201 - 545 5.7e-46 151.2 141.3 12 14 1.4e-05 0.016 16.0 2.3 1 23 464 486 464 487 0.89 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF77-201 - 545 5.7e-46 151.2 141.3 13 14 3.5e-07 0.00041 20.9 1.9 1 23 492 514 492 515 0.97 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF77-201 - 545 5.7e-46 151.2 141.3 14 14 2e-07 0.00024 21.7 0.4 1 23 520 542 520 543 0.96 C2H2-type zinc finger zf-C2H2 PF00096.26 23 ZNF77-201 - 545 8.5e-46 151.9 141.6 1 15 0.032 38 5.0 0.1 4 20 117 133 111 135 0.89 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF77-201 - 545 8.5e-46 151.9 141.6 2 15 0.017 20 5.9 0.3 2 12 143 153 142 155 0.87 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF77-201 - 545 8.5e-46 151.9 141.6 3 15 2.2 2.6e+03 -0.8 1.6 2 10 163 171 163 172 0.82 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF77-201 - 545 8.5e-46 151.9 141.6 4 15 0.00033 0.4 11.2 3.0 1 23 212 234 212 235 0.95 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF77-201 - 545 8.5e-46 151.9 141.6 5 15 8.3e-07 0.00099 19.4 3.3 1 23 240 262 240 262 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF77-201 - 545 8.5e-46 151.9 141.6 6 15 2.7e-06 0.0032 17.8 2.5 1 23 268 290 268 290 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF77-201 - 545 8.5e-46 151.9 141.6 7 15 4.3e-05 0.051 14.1 7.2 1 23 296 318 296 318 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF77-201 - 545 8.5e-46 151.9 141.6 8 15 0.00057 0.68 10.5 7.7 2 23 325 346 324 346 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF77-201 - 545 8.5e-46 151.9 141.6 9 15 2.4e-10 2.9e-07 30.6 0.7 1 23 352 374 352 374 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF77-201 - 545 8.5e-46 151.9 141.6 10 15 8.6e-05 0.1 13.1 3.1 1 23 380 402 380 402 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF77-201 - 545 8.5e-46 151.9 141.6 11 15 2.2e-08 2.6e-05 24.4 0.9 1 23 408 430 408 430 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF77-201 - 545 8.5e-46 151.9 141.6 12 15 3.2e-05 0.038 14.4 7.0 1 23 436 458 436 458 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF77-201 - 545 8.5e-46 151.9 141.6 13 15 3e-07 0.00036 20.8 2.3 1 23 464 486 464 486 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF77-201 - 545 8.5e-46 151.9 141.6 14 15 1.3e-06 0.0016 18.8 1.8 1 23 492 514 492 514 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF77-201 - 545 8.5e-46 151.9 141.6 15 15 2.2e-08 2.6e-05 24.4 0.7 1 23 520 542 520 542 0.99 Zinc finger, C2H2 type KRAB PF01352.27 42 ZNF77-201 - 545 6.5e-23 80.1 0.1 1 1 9.2e-26 1.1e-22 79.4 0.1 2 42 4 44 3 44 0.97 KRAB box zf-C2H2_6 PF13912.6 27 ZNF77-201 - 545 2.7e-17 62.3 127.7 1 14 0.033 40 4.4 0.8 3 12 143 152 143 153 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF77-201 - 545 2.7e-17 62.3 127.7 2 14 1 1.2e+03 -0.4 0.3 3 8 163 168 162 169 0.86 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF77-201 - 545 2.7e-17 62.3 127.7 3 14 0.1 1.2e+02 2.8 5.5 2 11 212 221 211 237 0.81 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF77-201 - 545 2.7e-17 62.3 127.7 4 14 2.5e-05 0.03 14.3 2.3 2 24 240 262 239 265 0.92 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF77-201 - 545 2.7e-17 62.3 127.7 5 14 0.00069 0.83 9.7 1.0 2 12 268 278 268 278 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF77-201 - 545 2.7e-17 62.3 127.7 6 14 0.004 4.8 7.3 6.0 2 24 296 318 296 321 0.91 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF77-201 - 545 2.7e-17 62.3 127.7 7 14 0.0013 1.5 8.9 5.8 4 25 326 347 325 349 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF77-201 - 545 2.7e-17 62.3 127.7 8 14 6.7e-08 8e-05 22.5 0.4 2 24 352 374 352 377 0.95 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF77-201 - 545 2.7e-17 62.3 127.7 9 14 0.0029 3.5 7.8 0.3 2 11 380 389 380 390 0.92 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF77-201 - 545 2.7e-17 62.3 127.7 10 14 0.0025 3 7.9 1.0 2 24 408 430 408 433 0.84 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF77-201 - 545 2.7e-17 62.3 127.7 11 14 0.0058 6.9 6.8 7.2 2 25 436 459 436 461 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF77-201 - 545 2.7e-17 62.3 127.7 12 14 0.0026 3.1 7.9 2.3 2 13 464 475 464 488 0.78 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF77-201 - 545 2.7e-17 62.3 127.7 13 14 0.0011 1.3 9.1 2.1 2 24 492 514 492 517 0.89 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF77-201 - 545 2.7e-17 62.3 127.7 14 14 6.1e-08 7.3e-05 22.7 1.0 2 24 520 542 520 544 0.97 C2H2-type zinc finger Zn-ribbon_8 PF09723.10 40 ZNF77-201 - 545 4.5e-09 36.3 96.5 1 10 5.1e-05 0.061 13.5 8.5 7 35 143 170 143 174 0.85 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF77-201 - 545 4.5e-09 36.3 96.5 2 10 0.00097 1.2 9.4 3.8 6 34 212 247 211 250 0.80 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF77-201 - 545 4.5e-09 36.3 96.5 3 10 0.0014 1.6 8.9 8.5 6 34 268 303 267 306 0.87 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF77-201 - 545 4.5e-09 36.3 96.5 4 10 0.0021 2.5 8.3 9.0 6 35 296 332 295 334 0.79 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF77-201 - 545 4.5e-09 36.3 96.5 5 10 6.1e-06 0.0073 16.4 2.2 6 34 352 387 351 390 0.89 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF77-201 - 545 4.5e-09 36.3 96.5 6 10 0.0031 3.7 7.7 5.3 6 34 408 443 405 447 0.82 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF77-201 - 545 4.5e-09 36.3 96.5 7 10 0.033 40 4.4 1.0 6 16 436 446 435 461 0.81 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF77-201 - 545 4.5e-09 36.3 96.5 8 10 0.00098 1.2 9.3 6.0 6 34 464 499 463 502 0.78 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF77-201 - 545 4.5e-09 36.3 96.5 9 10 0.0056 6.7 6.9 7.8 6 36 492 529 491 532 0.86 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF77-201 - 545 4.5e-09 36.3 96.5 10 10 0.0011 1.3 9.2 0.5 6 20 520 534 519 541 0.84 Zinc ribbon domain zf-C2H2_jaz PF12171.8 27 ZNF77-201 - 545 3e-08 33.7 83.2 1 13 5.7 6.8e+03 -2.4 0.3 4 14 144 154 142 155 0.81 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF77-201 - 545 3e-08 33.7 83.2 2 13 0.012 14 6.1 2.3 2 24 212 234 211 235 0.95 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF77-201 - 545 3e-08 33.7 83.2 3 13 0.09 1.1e+02 3.3 0.2 2 11 240 249 239 249 0.89 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF77-201 - 545 3e-08 33.7 83.2 4 13 0.002 2.4 8.6 0.7 2 24 268 290 267 290 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF77-201 - 545 3e-08 33.7 83.2 5 13 0.0086 10 6.5 3.4 2 24 296 318 295 318 0.88 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF77-201 - 545 3e-08 33.7 83.2 6 13 0.71 8.5e+02 0.4 1.1 4 11 326 333 326 342 0.91 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF77-201 - 545 3e-08 33.7 83.2 7 13 0.0013 1.5 9.2 0.0 2 22 352 372 351 372 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF77-201 - 545 3e-08 33.7 83.2 8 13 0.056 66 4.0 0.4 2 24 380 402 379 403 0.91 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF77-201 - 545 3e-08 33.7 83.2 9 13 0.086 1e+02 3.3 0.2 4 24 410 430 407 430 0.88 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF77-201 - 545 3e-08 33.7 83.2 10 13 7.2e-05 0.086 13.2 2.4 2 24 436 458 435 459 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF77-201 - 545 3e-08 33.7 83.2 11 13 0.0001 0.12 12.7 2.5 2 24 464 486 463 487 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF77-201 - 545 3e-08 33.7 83.2 12 13 0.0076 9.1 6.7 0.3 2 24 492 514 491 514 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF77-201 - 545 3e-08 33.7 83.2 13 13 0.00072 0.86 10.0 0.1 2 24 520 542 519 543 0.93 Zinc-finger double-stranded RNA-binding # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF77-201.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF77-201.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF77-201.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF77-201.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF77-201.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:14:02 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF77-202.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF77-202.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF77-202.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF77-202.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF77-202.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:14:02 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZNF772-201 - 489 6.6e-65 212.8 66.9 1 11 1.8e-06 0.0018 18.6 0.8 1 24 158 181 158 181 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF772-201 - 489 6.6e-65 212.8 66.9 2 11 0.0034 3.4 8.3 0.3 2 16 187 201 186 213 0.86 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF772-201 - 489 6.6e-65 212.8 66.9 3 11 0.0011 1.1 9.8 5.3 8 25 259 276 244 277 0.90 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF772-201 - 489 6.6e-65 212.8 66.9 4 11 9.5e-12 9.5e-09 35.3 0.2 1 25 280 304 280 305 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF772-201 - 489 6.6e-65 212.8 66.9 5 11 1.4e-09 1.4e-06 28.5 0.1 2 26 309 333 309 333 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF772-201 - 489 6.6e-65 212.8 66.9 6 11 7.1e-10 7.1e-07 29.4 0.4 1 26 336 361 336 361 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF772-201 - 489 6.6e-65 212.8 66.9 7 11 6.5e-11 6.5e-08 32.7 0.6 2 26 365 389 364 389 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF772-201 - 489 6.6e-65 212.8 66.9 8 11 1.3e-07 0.00013 22.2 0.1 2 25 393 416 392 417 0.89 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF772-201 - 489 6.6e-65 212.8 66.9 9 11 4.6e-11 4.6e-08 33.1 0.2 2 26 421 445 420 445 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF772-201 - 489 6.6e-65 212.8 66.9 10 11 1.1e-10 1.1e-07 31.9 0.7 2 25 449 472 448 473 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF772-201 - 489 6.6e-65 212.8 66.9 11 11 0.036 36 5.0 0.1 2 14 477 489 476 489 0.90 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZNF772-201 - 489 1.4e-48 160.7 73.7 1 11 0.00034 0.34 11.5 0.1 1 23 144 166 144 166 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF772-201 - 489 1.4e-48 160.7 73.7 2 11 7.6e-05 0.076 13.5 4.6 1 23 172 194 172 194 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF772-201 - 489 1.4e-48 160.7 73.7 3 11 4.3 4.3e+03 -1.5 0.4 2 8 254 263 253 264 0.83 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF772-201 - 489 1.4e-48 160.7 73.7 4 11 5.9e-10 5.9e-07 29.6 1.2 1 23 266 288 266 288 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF772-201 - 489 1.4e-48 160.7 73.7 5 11 4.8e-07 0.00047 20.4 0.1 1 23 294 316 294 316 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF772-201 - 489 1.4e-48 160.7 73.7 6 11 3.4e-10 3.4e-07 30.3 0.3 1 23 322 344 322 344 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF772-201 - 489 1.4e-48 160.7 73.7 7 11 2.6e-07 0.00026 21.3 1.3 1 23 350 372 350 372 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF772-201 - 489 1.4e-48 160.7 73.7 8 11 8.7e-06 0.0086 16.5 1.6 1 23 378 400 378 400 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF772-201 - 489 1.4e-48 160.7 73.7 9 11 1.3e-06 0.0013 19.1 0.1 1 23 406 428 406 428 0.91 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF772-201 - 489 1.4e-48 160.7 73.7 10 11 1.8e-06 0.0018 18.6 4.2 1 23 434 456 434 456 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF772-201 - 489 1.4e-48 160.7 73.7 11 11 2.3e-08 2.3e-05 24.6 0.3 1 23 462 484 462 484 0.98 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZNF772-201 - 489 3e-29 99.2 68.7 1 10 0.017 17 6.6 0.1 1 23 144 166 144 167 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF772-201 - 489 3e-29 99.2 68.7 2 10 0.0006 0.6 11.1 4.7 1 23 172 194 172 195 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF772-201 - 489 3e-29 99.2 68.7 3 10 2.9e-07 0.00029 21.4 1.1 1 23 266 288 266 289 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF772-201 - 489 3e-29 99.2 68.7 4 10 3.4e-05 0.034 15.0 0.2 1 23 294 316 294 317 0.88 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF772-201 - 489 3e-29 99.2 68.7 5 10 2.1e-05 0.021 15.6 0.4 1 23 322 344 322 345 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF772-201 - 489 3e-29 99.2 68.7 6 10 0.00013 0.13 13.2 1.3 1 23 350 372 350 373 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF772-201 - 489 3e-29 99.2 68.7 7 10 6.4e-05 0.063 14.1 1.7 1 23 378 400 378 401 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF772-201 - 489 3e-29 99.2 68.7 8 10 0.0002 0.19 12.6 0.2 1 23 406 428 406 429 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF772-201 - 489 3e-29 99.2 68.7 9 10 0.0012 1.2 10.1 3.8 1 23 434 456 434 457 0.81 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF772-201 - 489 3e-29 99.2 68.7 10 10 9.1e-07 0.00091 19.9 0.5 1 23 462 484 462 485 0.96 C2H2-type zinc finger KRAB PF01352.27 42 ZNF772-201 - 489 4.2e-22 77.5 2.3 1 1 7.4e-25 7.3e-22 76.7 2.3 2 42 27 67 26 67 0.98 KRAB box zf-C2H2_jaz PF12171.8 27 ZNF772-201 - 489 4e-13 49.3 41.2 1 9 0.021 21 5.6 3.1 2 22 172 192 171 195 0.77 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF772-201 - 489 4e-13 49.3 41.2 2 9 0.00022 0.22 11.9 0.6 2 22 266 286 265 286 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF772-201 - 489 4e-13 49.3 41.2 3 9 0.042 42 4.6 0.0 2 13 294 305 293 314 0.80 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF772-201 - 489 4e-13 49.3 41.2 4 9 0.00084 0.83 10.0 0.0 2 22 322 342 321 342 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF772-201 - 489 4e-13 49.3 41.2 5 9 0.0013 1.3 9.4 0.2 2 22 350 370 349 370 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF772-201 - 489 4e-13 49.3 41.2 6 9 0.0041 4.1 7.8 0.4 2 21 378 397 377 398 0.88 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF772-201 - 489 4e-13 49.3 41.2 7 9 0.00025 0.25 11.7 0.1 2 22 406 426 405 426 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF772-201 - 489 4e-13 49.3 41.2 8 9 0.0088 8.8 6.8 1.0 2 20 434 452 433 453 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF772-201 - 489 4e-13 49.3 41.2 9 9 0.055 55 4.2 0.0 2 22 462 482 461 482 0.89 Zinc-finger double-stranded RNA-binding Zn-ribbon_8 PF09723.10 40 ZNF772-201 - 489 2.2e-08 34.0 43.5 1 9 1.5 1.5e+03 -0.6 0.0 6 15 144 153 142 168 0.71 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF772-201 - 489 2.2e-08 34.0 43.5 2 9 0.41 4.1e+02 1.2 0.7 6 15 172 181 170 194 0.86 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF772-201 - 489 2.2e-08 34.0 43.5 3 9 1.6e-05 0.016 15.3 4.4 6 38 266 305 265 308 0.90 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF772-201 - 489 2.2e-08 34.0 43.5 4 9 0.0051 5.1 7.3 0.4 6 16 294 304 292 316 0.85 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF772-201 - 489 2.2e-08 34.0 43.5 5 9 1.6e-05 0.016 15.3 0.7 6 35 322 358 320 364 0.92 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF772-201 - 489 2.2e-08 34.0 43.5 6 9 0.022 22 5.3 0.6 6 15 378 387 376 396 0.90 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF772-201 - 489 2.2e-08 34.0 43.5 7 9 0.00019 0.19 11.9 1.8 6 35 406 442 405 448 0.90 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF772-201 - 489 2.2e-08 34.0 43.5 8 9 0.00015 0.15 12.2 4.5 6 38 434 473 431 475 0.88 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF772-201 - 489 2.2e-08 34.0 43.5 9 9 0.0034 3.4 7.9 0.4 6 19 462 475 461 480 0.84 Zinc ribbon domain zf-C2H2_6 PF13912.6 27 ZNF772-201 - 489 6.7e-08 32.3 66.5 1 10 0.9 9e+02 0.1 0.1 1 12 143 154 143 168 0.74 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF772-201 - 489 6.7e-08 32.3 66.5 2 10 3.4 3.4e+03 -1.8 4.2 4 24 174 194 172 197 0.75 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF772-201 - 489 6.7e-08 32.3 66.5 3 10 3.1e-06 0.0031 17.5 2.3 1 24 265 288 265 291 0.90 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF772-201 - 489 6.7e-08 32.3 66.5 4 10 0.0022 2.2 8.4 0.5 2 12 294 304 294 305 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF772-201 - 489 6.7e-08 32.3 66.5 5 10 0.0014 1.4 9.0 0.4 2 20 322 340 322 345 0.78 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF772-201 - 489 6.7e-08 32.3 66.5 6 10 0.0052 5.2 7.2 1.1 2 12 350 360 350 361 0.90 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF772-201 - 489 6.7e-08 32.3 66.5 7 10 0.0022 2.2 8.4 1.7 2 20 378 396 378 400 0.82 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF772-201 - 489 6.7e-08 32.3 66.5 8 10 0.19 1.9e+02 2.2 0.2 2 24 406 428 406 431 0.87 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF772-201 - 489 6.7e-08 32.3 66.5 9 10 0.0017 1.6 8.8 0.8 2 12 434 444 434 454 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF772-201 - 489 6.7e-08 32.3 66.5 10 10 0.00025 0.25 11.4 0.2 2 18 462 478 462 485 0.79 C2H2-type zinc finger zf_UBZ PF18439.1 32 ZNF772-201 - 489 5.1e-07 29.2 39.1 1 10 0.092 92 2.8 0.0 3 21 144 163 142 163 0.87 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF772-201 - 489 5.1e-07 29.2 39.1 2 10 4.1 4.1e+03 -2.5 0.5 3 15 172 184 171 191 0.68 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF772-201 - 489 5.1e-07 29.2 39.1 3 10 0.00034 0.34 10.5 0.3 2 20 265 284 264 285 0.80 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF772-201 - 489 5.1e-07 29.2 39.1 4 10 0.0071 7.1 6.3 0.1 3 20 294 312 292 313 0.79 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF772-201 - 489 5.1e-07 29.2 39.1 5 10 0.11 1.1e+02 2.5 0.1 3 15 322 334 321 341 0.83 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF772-201 - 489 5.1e-07 29.2 39.1 6 10 0.0057 5.7 6.6 0.3 3 17 350 365 348 369 0.76 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF772-201 - 489 5.1e-07 29.2 39.1 7 10 0.012 11 5.7 0.2 3 12 378 387 376 390 0.89 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF772-201 - 489 5.1e-07 29.2 39.1 8 10 0.049 48 3.7 0.1 3 21 406 425 404 425 0.89 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF772-201 - 489 5.1e-07 29.2 39.1 9 10 0.0013 1.3 8.7 0.2 3 14 434 445 432 453 0.85 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF772-201 - 489 5.1e-07 29.2 39.1 10 10 0.0083 8.3 6.1 0.1 3 12 462 471 460 477 0.87 Ubiquitin-Binding Zinc Finger # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF772-201.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF772-201.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF772-201.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF772-201.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF772-201.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:14:02 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZNF772-202 - 448 3.4e-65 213.8 67.6 1 11 1.9e-06 0.0016 18.8 0.8 1 24 117 140 117 140 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF772-202 - 448 3.4e-65 213.8 67.6 2 11 0.0036 3 8.4 0.3 2 16 146 160 145 172 0.86 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF772-202 - 448 3.4e-65 213.8 67.6 3 11 0.0018 1.6 9.3 5.9 8 25 218 235 199 236 0.90 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF772-202 - 448 3.4e-65 213.8 67.6 4 11 1e-11 8.5e-09 35.4 0.2 1 25 239 263 239 264 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF772-202 - 448 3.4e-65 213.8 67.6 5 11 1.5e-09 1.2e-06 28.6 0.1 2 26 268 292 268 292 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF772-202 - 448 3.4e-65 213.8 67.6 6 11 7.5e-10 6.4e-07 29.5 0.4 1 26 295 320 295 320 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF772-202 - 448 3.4e-65 213.8 67.6 7 11 6.8e-11 5.8e-08 32.8 0.6 2 26 324 348 323 348 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF772-202 - 448 3.4e-65 213.8 67.6 8 11 1.4e-07 0.00012 22.3 0.1 2 25 352 375 351 376 0.89 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF772-202 - 448 3.4e-65 213.8 67.6 9 11 4.9e-11 4.2e-08 33.3 0.2 2 26 380 404 379 404 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF772-202 - 448 3.4e-65 213.8 67.6 10 11 1.2e-10 9.9e-08 32.1 0.7 2 25 408 431 407 432 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF772-202 - 448 3.4e-65 213.8 67.6 11 11 0.038 33 5.1 0.1 2 14 436 448 435 448 0.90 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZNF772-202 - 448 5.3e-49 162.0 73.7 1 11 0.00036 0.3 11.6 0.1 1 23 103 125 103 125 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF772-202 - 448 5.3e-49 162.0 73.7 2 11 8e-05 0.068 13.7 4.6 1 23 131 153 131 153 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF772-202 - 448 5.3e-49 162.0 73.7 3 11 4.5 3.9e+03 -1.3 0.4 2 8 213 222 212 223 0.83 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF772-202 - 448 5.3e-49 162.0 73.7 4 11 6.2e-10 5.3e-07 29.7 1.2 1 23 225 247 225 247 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF772-202 - 448 5.3e-49 162.0 73.7 5 11 5e-07 0.00043 20.6 0.1 1 23 253 275 253 275 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF772-202 - 448 5.3e-49 162.0 73.7 6 11 3.6e-10 3.1e-07 30.5 0.3 1 23 281 303 281 303 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF772-202 - 448 5.3e-49 162.0 73.7 7 11 2.7e-07 0.00023 21.4 1.3 1 23 309 331 309 331 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF772-202 - 448 5.3e-49 162.0 73.7 8 11 9.1e-06 0.0078 16.6 1.6 1 23 337 359 337 359 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF772-202 - 448 5.3e-49 162.0 73.7 9 11 1.4e-06 0.0012 19.2 0.1 1 23 365 387 365 387 0.91 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF772-202 - 448 5.3e-49 162.0 73.7 10 11 1.9e-06 0.0016 18.8 4.2 1 23 393 415 393 415 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF772-202 - 448 5.3e-49 162.0 73.7 11 11 2.4e-08 2.1e-05 24.7 0.3 1 23 421 443 421 443 0.98 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZNF772-202 - 448 1e-29 100.6 68.7 1 10 0.018 15 6.7 0.1 1 23 103 125 103 126 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF772-202 - 448 1e-29 100.6 68.7 2 10 0.00063 0.54 11.2 4.7 1 23 131 153 131 154 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF772-202 - 448 1e-29 100.6 68.7 3 10 3.1e-07 0.00026 21.5 1.1 1 23 225 247 225 248 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF772-202 - 448 1e-29 100.6 68.7 4 10 3.6e-05 0.031 15.1 0.2 1 23 253 275 253 276 0.88 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF772-202 - 448 1e-29 100.6 68.7 5 10 2.2e-05 0.019 15.8 0.4 1 23 281 303 281 304 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF772-202 - 448 1e-29 100.6 68.7 6 10 0.00013 0.11 13.3 1.3 1 23 309 331 309 332 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF772-202 - 448 1e-29 100.6 68.7 7 10 6.7e-05 0.057 14.3 1.7 1 23 337 359 337 360 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF772-202 - 448 1e-29 100.6 68.7 8 10 0.0002 0.17 12.8 0.2 1 23 365 387 365 388 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF772-202 - 448 1e-29 100.6 68.7 9 10 0.0013 1.1 10.3 3.8 1 23 393 415 393 416 0.81 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF772-202 - 448 1e-29 100.6 68.7 10 10 9.5e-07 0.00081 20.0 0.5 1 23 421 443 421 444 0.96 C2H2-type zinc finger KRAB PF01352.27 42 ZNF772-202 - 448 3.7e-22 77.7 2.3 1 1 7.7e-25 6.6e-22 76.9 2.3 2 42 27 67 26 67 0.98 KRAB box zf-C2H2_jaz PF12171.8 27 ZNF772-202 - 448 1.6e-13 50.5 41.2 1 9 0.022 19 5.7 3.1 2 22 131 151 130 154 0.78 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF772-202 - 448 1.6e-13 50.5 41.2 2 9 0.00023 0.2 12.0 0.6 2 22 225 245 224 245 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF772-202 - 448 1.6e-13 50.5 41.2 3 9 0.044 38 4.7 0.0 2 13 253 264 252 273 0.80 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF772-202 - 448 1.6e-13 50.5 41.2 4 9 0.00088 0.75 10.2 0.0 2 22 281 301 280 301 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF772-202 - 448 1.6e-13 50.5 41.2 5 9 0.0013 1.1 9.6 0.2 2 22 309 329 308 329 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF772-202 - 448 1.6e-13 50.5 41.2 6 9 0.0044 3.7 7.9 0.4 2 21 337 356 336 357 0.88 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF772-202 - 448 1.6e-13 50.5 41.2 7 9 0.00026 0.22 11.8 0.1 2 22 365 385 364 385 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF772-202 - 448 1.6e-13 50.5 41.2 8 9 0.0093 7.9 6.9 1.0 2 20 393 411 392 412 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF772-202 - 448 1.6e-13 50.5 41.2 9 9 0.058 49 4.4 0.0 2 22 421 441 420 441 0.89 Zinc-finger double-stranded RNA-binding Zn-ribbon_8 PF09723.10 40 ZNF772-202 - 448 1.2e-08 35.0 43.6 1 9 1.6 1.4e+03 -0.5 0.0 6 15 103 112 101 127 0.71 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF772-202 - 448 1.2e-08 35.0 43.6 2 9 0.44 3.7e+02 1.3 0.7 6 15 131 140 129 153 0.86 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF772-202 - 448 1.2e-08 35.0 43.6 3 9 1.9e-05 0.016 15.3 4.5 6 38 225 264 224 267 0.90 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF772-202 - 448 1.2e-08 35.0 43.6 4 9 0.0053 4.6 7.5 0.4 6 16 253 263 252 275 0.85 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF772-202 - 448 1.2e-08 35.0 43.6 5 9 1.7e-05 0.014 15.5 0.7 6 35 281 317 279 323 0.92 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF772-202 - 448 1.2e-08 35.0 43.6 6 9 0.023 19 5.4 0.6 6 15 337 346 335 355 0.90 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF772-202 - 448 1.2e-08 35.0 43.6 7 9 0.00019 0.16 12.1 1.7 6 35 365 401 364 407 0.90 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF772-202 - 448 1.2e-08 35.0 43.6 8 9 0.00018 0.15 12.2 4.7 6 38 393 432 390 434 0.88 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF772-202 - 448 1.2e-08 35.0 43.6 9 9 0.004 3.4 7.9 0.4 6 19 421 434 420 438 0.84 Zinc ribbon domain zf-C2H2_6 PF13912.6 27 ZNF772-202 - 448 1.5e-08 34.4 65.8 1 10 0.95 8.1e+02 0.2 0.1 1 12 102 113 102 127 0.74 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF772-202 - 448 1.5e-08 34.4 65.8 2 10 3.6 3.1e+03 -1.7 4.3 4 24 133 153 131 156 0.75 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF772-202 - 448 1.5e-08 34.4 65.8 3 10 3.2e-06 0.0028 17.6 2.3 1 24 224 247 224 250 0.90 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF772-202 - 448 1.5e-08 34.4 65.8 4 10 0.0024 2 8.5 0.5 2 12 253 263 253 264 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF772-202 - 448 1.5e-08 34.4 65.8 5 10 0.0015 1.3 9.1 0.4 2 20 281 299 281 304 0.79 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF772-202 - 448 1.5e-08 34.4 65.8 6 10 0.0055 4.7 7.3 1.1 2 12 309 319 309 320 0.90 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF772-202 - 448 1.5e-08 34.4 65.8 7 10 0.0023 2 8.5 1.7 2 20 337 355 337 359 0.82 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF772-202 - 448 1.5e-08 34.4 65.8 8 10 0.2 1.7e+02 2.4 0.2 2 24 365 387 365 390 0.87 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF772-202 - 448 1.5e-08 34.4 65.8 9 10 0.0015 1.2 9.2 0.5 2 12 393 403 393 414 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF772-202 - 448 1.5e-08 34.4 65.8 10 10 0.00026 0.22 11.5 0.2 2 18 421 437 421 444 0.79 C2H2-type zinc finger zf_UBZ PF18439.1 32 ZNF772-202 - 448 2e-07 30.5 39.1 1 10 0.097 83 2.9 0.0 3 21 103 122 101 122 0.87 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF772-202 - 448 2e-07 30.5 39.1 2 10 4.3 3.7e+03 -2.4 0.5 3 15 131 143 130 150 0.68 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF772-202 - 448 2e-07 30.5 39.1 3 10 0.00036 0.31 10.7 0.3 2 20 224 243 223 244 0.80 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF772-202 - 448 2e-07 30.5 39.1 4 10 0.0075 6.4 6.5 0.1 3 20 253 271 251 272 0.79 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF772-202 - 448 2e-07 30.5 39.1 5 10 0.12 1e+02 2.6 0.1 3 15 281 293 280 300 0.83 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF772-202 - 448 2e-07 30.5 39.1 6 10 0.0061 5.2 6.8 0.3 3 17 309 324 307 328 0.76 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF772-202 - 448 2e-07 30.5 39.1 7 10 0.012 10 5.8 0.2 3 12 337 346 335 349 0.89 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF772-202 - 448 2e-07 30.5 39.1 8 10 0.051 44 3.8 0.1 3 21 365 384 363 384 0.89 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF772-202 - 448 2e-07 30.5 39.1 9 10 0.0014 1.2 8.8 0.2 3 14 393 404 391 412 0.85 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF772-202 - 448 2e-07 30.5 39.1 10 10 0.0088 7.5 6.2 0.1 3 12 421 430 419 436 0.87 Ubiquitin-Binding Zinc Finger # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF772-202.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF772-202.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF772-202.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF772-202.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF772-202.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:14:03 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZNF772-203 - 377 2.6e-66 217.3 67.3 1 11 1.7e-06 0.0013 19.0 0.8 1 24 46 69 46 69 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF772-203 - 377 2.6e-66 217.3 67.3 2 11 0.0032 2.5 8.7 0.3 1 16 74 89 74 101 0.86 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF772-203 - 377 2.6e-66 217.3 67.3 3 11 0.0013 1 9.9 5.7 8 25 147 164 127 165 0.90 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF772-203 - 377 2.6e-66 217.3 67.3 4 11 8.8e-12 6.9e-09 35.7 0.2 1 25 168 192 168 193 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF772-203 - 377 2.6e-66 217.3 67.3 5 11 1.3e-09 1e-06 28.9 0.1 2 26 197 221 197 221 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF772-203 - 377 2.6e-66 217.3 67.3 6 11 6.6e-10 5.2e-07 29.8 0.4 1 26 224 249 224 249 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF772-203 - 377 2.6e-66 217.3 67.3 7 11 6e-11 4.7e-08 33.1 0.6 2 26 253 277 252 277 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF772-203 - 377 2.6e-66 217.3 67.3 8 11 1.3e-07 9.7e-05 22.6 0.1 2 25 281 304 280 305 0.89 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF772-203 - 377 2.6e-66 217.3 67.3 9 11 4.3e-11 3.4e-08 33.6 0.2 2 26 309 333 308 333 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF772-203 - 377 2.6e-66 217.3 67.3 10 11 1e-10 8e-08 32.4 0.7 2 25 337 360 336 361 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF772-203 - 377 2.6e-66 217.3 67.3 11 11 0.034 27 5.4 0.1 2 14 365 377 364 377 0.90 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZNF772-203 - 377 5.9e-50 165.0 73.7 1 11 0.00032 0.25 11.9 0.1 1 23 32 54 32 54 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF772-203 - 377 5.9e-50 165.0 73.7 2 11 7.1e-05 0.055 13.9 4.6 1 23 60 82 60 82 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF772-203 - 377 5.9e-50 165.0 73.7 3 11 4.1 3.2e+03 -1.1 0.4 2 8 142 151 141 152 0.83 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF772-203 - 377 5.9e-50 165.0 73.7 4 11 5.5e-10 4.3e-07 30.0 1.2 1 23 154 176 154 176 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF772-203 - 377 5.9e-50 165.0 73.7 5 11 4.4e-07 0.00035 20.9 0.1 1 23 182 204 182 204 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF772-203 - 377 5.9e-50 165.0 73.7 6 11 3.2e-10 2.5e-07 30.8 0.3 1 23 210 232 210 232 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF772-203 - 377 5.9e-50 165.0 73.7 7 11 2.4e-07 0.00019 21.7 1.3 1 23 238 260 238 260 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF772-203 - 377 5.9e-50 165.0 73.7 8 11 8e-06 0.0063 16.9 1.6 1 23 266 288 266 288 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF772-203 - 377 5.9e-50 165.0 73.7 9 11 1.2e-06 0.00096 19.5 0.1 1 23 294 316 294 316 0.91 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF772-203 - 377 5.9e-50 165.0 73.7 10 11 1.7e-06 0.0013 19.1 4.2 1 23 322 344 322 344 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF772-203 - 377 5.9e-50 165.0 73.7 11 11 2.1e-08 1.7e-05 25.0 0.3 1 23 350 372 350 372 0.98 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZNF772-203 - 377 2.4e-29 99.5 72.8 1 10 0.016 12 7.0 0.1 1 23 32 54 32 55 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF772-203 - 377 2.4e-29 99.5 72.8 2 10 0.00056 0.43 11.5 4.7 1 23 60 82 60 83 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF772-203 - 377 2.4e-29 99.5 72.8 3 10 2.7e-07 0.00021 21.8 1.1 1 23 154 176 154 177 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF772-203 - 377 2.4e-29 99.5 72.8 4 10 3.2e-05 0.025 15.4 0.2 1 23 182 204 182 205 0.88 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF772-203 - 377 2.4e-29 99.5 72.8 5 10 2e-05 0.015 16.1 0.4 1 23 210 232 210 233 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF772-203 - 377 2.4e-29 99.5 72.8 6 10 0.00012 0.092 13.6 1.3 1 23 238 260 238 261 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF772-203 - 377 2.4e-29 99.5 72.8 7 10 5.9e-05 0.046 14.6 1.7 1 23 266 288 266 289 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF772-203 - 377 2.4e-29 99.5 72.8 8 10 0.00018 0.14 13.1 0.2 1 23 294 316 294 317 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF772-203 - 377 2.4e-29 99.5 72.8 9 10 0.0012 0.9 10.5 3.8 1 23 322 344 322 345 0.81 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF772-203 - 377 2.4e-29 99.5 72.8 10 10 8.4e-07 0.00066 20.3 0.5 1 23 350 372 350 373 0.96 C2H2-type zinc finger zf-C2H2_jaz PF12171.8 27 ZNF772-203 - 377 2.4e-14 53.1 41.2 1 9 0.02 15 6.0 3.1 2 22 60 80 59 83 0.78 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF772-203 - 377 2.4e-14 53.1 41.2 2 9 0.00021 0.16 12.3 0.6 2 22 154 174 153 174 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF772-203 - 377 2.4e-14 53.1 41.2 3 9 0.04 31 5.0 0.0 2 13 182 193 181 202 0.80 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF772-203 - 377 2.4e-14 53.1 41.2 4 9 0.00078 0.61 10.4 0.0 2 22 210 230 209 230 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF772-203 - 377 2.4e-14 53.1 41.2 5 9 0.0012 0.93 9.9 0.2 2 22 238 258 237 258 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF772-203 - 377 2.4e-14 53.1 41.2 6 9 0.0039 3 8.2 0.4 2 21 266 285 265 286 0.88 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF772-203 - 377 2.4e-14 53.1 41.2 7 9 0.00023 0.18 12.1 0.1 2 22 294 314 293 314 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF772-203 - 377 2.4e-14 53.1 41.2 8 9 0.0083 6.4 7.2 1.0 2 20 322 340 321 341 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF772-203 - 377 2.4e-14 53.1 41.2 9 9 0.051 40 4.7 0.0 2 22 350 370 349 370 0.89 Zinc-finger double-stranded RNA-binding Zn-ribbon_8 PF09723.10 40 ZNF772-203 - 377 1.9e-09 37.5 43.2 1 9 1.5 1.1e+03 -0.2 0.0 6 16 32 42 30 56 0.70 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF772-203 - 377 1.9e-09 37.5 43.2 2 9 0.41 3.2e+02 1.6 0.7 6 15 60 69 59 82 0.85 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF772-203 - 377 1.9e-09 37.5 43.2 3 9 1.6e-05 0.013 15.6 4.5 6 38 154 193 153 196 0.90 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF772-203 - 377 1.9e-09 37.5 43.2 4 9 0.0048 3.7 7.7 0.4 6 16 182 192 181 204 0.85 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF772-203 - 377 1.9e-09 37.5 43.2 5 9 1.2e-05 0.0097 16.0 0.5 6 35 210 246 208 253 0.92 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF772-203 - 377 1.9e-09 37.5 43.2 6 9 0.02 16 5.7 0.6 6 15 266 275 264 284 0.90 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF772-203 - 377 1.9e-09 37.5 43.2 7 9 0.00017 0.14 12.3 1.8 6 35 294 330 293 336 0.90 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF772-203 - 377 1.9e-09 37.5 43.2 8 9 0.00016 0.12 12.5 4.7 6 38 322 361 319 363 0.88 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF772-203 - 377 1.9e-09 37.5 43.2 9 9 0.0033 2.6 8.3 0.4 6 19 350 363 349 368 0.84 Zinc ribbon domain zf-C2H2_6 PF13912.6 27 ZNF772-203 - 377 7.8e-09 35.3 67.7 1 9 0.85 6.6e+02 0.5 0.1 1 12 31 42 31 56 0.74 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF772-203 - 377 7.8e-09 35.3 67.7 2 9 2.9e-06 0.0022 17.9 2.3 1 24 153 176 153 179 0.90 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF772-203 - 377 7.8e-09 35.3 67.7 3 9 0.0021 1.7 8.8 0.5 2 12 182 192 182 193 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF772-203 - 377 7.8e-09 35.3 67.7 4 9 0.0013 1 9.4 0.4 2 20 210 228 210 233 0.79 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF772-203 - 377 7.8e-09 35.3 67.7 5 9 0.005 3.9 7.6 1.1 2 12 238 248 238 249 0.90 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF772-203 - 377 7.8e-09 35.3 67.7 6 9 0.0021 1.6 8.8 1.7 2 20 266 284 266 288 0.82 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF772-203 - 377 7.8e-09 35.3 67.7 7 9 0.18 1.4e+02 2.7 0.2 2 24 294 316 294 319 0.87 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF772-203 - 377 7.8e-09 35.3 67.7 8 9 0.0013 1 9.4 0.5 2 12 322 332 322 343 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF772-203 - 377 7.8e-09 35.3 67.7 9 9 0.00024 0.18 11.8 0.2 2 18 350 366 350 373 0.79 C2H2-type zinc finger zf_UBZ PF18439.1 32 ZNF772-203 - 377 3.1e-08 33.0 39.1 1 10 0.087 68 3.2 0.0 3 21 32 51 30 51 0.88 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF772-203 - 377 3.1e-08 33.0 39.1 2 10 3.9 3e+03 -2.1 0.6 3 15 60 72 59 79 0.68 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF772-203 - 377 3.1e-08 33.0 39.1 3 10 0.00032 0.25 11.0 0.3 2 20 153 172 152 173 0.80 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF772-203 - 377 3.1e-08 33.0 39.1 4 10 0.0067 5.2 6.7 0.1 3 20 182 200 180 201 0.79 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF772-203 - 377 3.1e-08 33.0 39.1 5 10 0.11 83 2.9 0.1 3 15 210 222 209 229 0.83 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF772-203 - 377 3.1e-08 33.0 39.1 6 10 0.0054 4.2 7.0 0.3 3 17 238 253 236 257 0.76 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF772-203 - 377 3.1e-08 33.0 39.1 7 10 0.011 8.6 6.1 0.2 3 12 266 275 264 278 0.89 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF772-203 - 377 3.1e-08 33.0 39.1 8 10 0.046 36 4.1 0.1 3 21 294 313 292 313 0.89 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF772-203 - 377 3.1e-08 33.0 39.1 9 10 0.0012 0.95 9.1 0.2 3 14 322 333 320 341 0.85 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF772-203 - 377 3.1e-08 33.0 39.1 10 10 0.0079 6.2 6.5 0.1 3 12 350 359 348 365 0.87 Ubiquitin-Binding Zinc Finger # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF772-203.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF772-203.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF772-203.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF772-203.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF772-203.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:14:03 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZNF772-204 - 377 2.6e-66 217.3 67.3 1 11 1.7e-06 0.0013 19.0 0.8 1 24 46 69 46 69 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF772-204 - 377 2.6e-66 217.3 67.3 2 11 0.0032 2.5 8.7 0.3 1 16 74 89 74 101 0.86 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF772-204 - 377 2.6e-66 217.3 67.3 3 11 0.0013 1 9.9 5.7 8 25 147 164 127 165 0.90 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF772-204 - 377 2.6e-66 217.3 67.3 4 11 8.8e-12 6.9e-09 35.7 0.2 1 25 168 192 168 193 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF772-204 - 377 2.6e-66 217.3 67.3 5 11 1.3e-09 1e-06 28.9 0.1 2 26 197 221 197 221 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF772-204 - 377 2.6e-66 217.3 67.3 6 11 6.6e-10 5.2e-07 29.8 0.4 1 26 224 249 224 249 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF772-204 - 377 2.6e-66 217.3 67.3 7 11 6e-11 4.7e-08 33.1 0.6 2 26 253 277 252 277 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF772-204 - 377 2.6e-66 217.3 67.3 8 11 1.3e-07 9.7e-05 22.6 0.1 2 25 281 304 280 305 0.89 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF772-204 - 377 2.6e-66 217.3 67.3 9 11 4.3e-11 3.4e-08 33.6 0.2 2 26 309 333 308 333 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF772-204 - 377 2.6e-66 217.3 67.3 10 11 1e-10 8e-08 32.4 0.7 2 25 337 360 336 361 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF772-204 - 377 2.6e-66 217.3 67.3 11 11 0.034 27 5.4 0.1 2 14 365 377 364 377 0.90 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZNF772-204 - 377 5.9e-50 165.0 73.7 1 11 0.00032 0.25 11.9 0.1 1 23 32 54 32 54 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF772-204 - 377 5.9e-50 165.0 73.7 2 11 7.1e-05 0.055 13.9 4.6 1 23 60 82 60 82 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF772-204 - 377 5.9e-50 165.0 73.7 3 11 4.1 3.2e+03 -1.1 0.4 2 8 142 151 141 152 0.83 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF772-204 - 377 5.9e-50 165.0 73.7 4 11 5.5e-10 4.3e-07 30.0 1.2 1 23 154 176 154 176 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF772-204 - 377 5.9e-50 165.0 73.7 5 11 4.4e-07 0.00035 20.9 0.1 1 23 182 204 182 204 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF772-204 - 377 5.9e-50 165.0 73.7 6 11 3.2e-10 2.5e-07 30.8 0.3 1 23 210 232 210 232 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF772-204 - 377 5.9e-50 165.0 73.7 7 11 2.4e-07 0.00019 21.7 1.3 1 23 238 260 238 260 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF772-204 - 377 5.9e-50 165.0 73.7 8 11 8e-06 0.0063 16.9 1.6 1 23 266 288 266 288 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF772-204 - 377 5.9e-50 165.0 73.7 9 11 1.2e-06 0.00096 19.5 0.1 1 23 294 316 294 316 0.91 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF772-204 - 377 5.9e-50 165.0 73.7 10 11 1.7e-06 0.0013 19.1 4.2 1 23 322 344 322 344 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF772-204 - 377 5.9e-50 165.0 73.7 11 11 2.1e-08 1.7e-05 25.0 0.3 1 23 350 372 350 372 0.98 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZNF772-204 - 377 2.4e-29 99.5 72.8 1 10 0.016 12 7.0 0.1 1 23 32 54 32 55 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF772-204 - 377 2.4e-29 99.5 72.8 2 10 0.00056 0.43 11.5 4.7 1 23 60 82 60 83 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF772-204 - 377 2.4e-29 99.5 72.8 3 10 2.7e-07 0.00021 21.8 1.1 1 23 154 176 154 177 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF772-204 - 377 2.4e-29 99.5 72.8 4 10 3.2e-05 0.025 15.4 0.2 1 23 182 204 182 205 0.88 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF772-204 - 377 2.4e-29 99.5 72.8 5 10 2e-05 0.015 16.1 0.4 1 23 210 232 210 233 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF772-204 - 377 2.4e-29 99.5 72.8 6 10 0.00012 0.092 13.6 1.3 1 23 238 260 238 261 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF772-204 - 377 2.4e-29 99.5 72.8 7 10 5.9e-05 0.046 14.6 1.7 1 23 266 288 266 289 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF772-204 - 377 2.4e-29 99.5 72.8 8 10 0.00018 0.14 13.1 0.2 1 23 294 316 294 317 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF772-204 - 377 2.4e-29 99.5 72.8 9 10 0.0012 0.9 10.5 3.8 1 23 322 344 322 345 0.81 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF772-204 - 377 2.4e-29 99.5 72.8 10 10 8.4e-07 0.00066 20.3 0.5 1 23 350 372 350 373 0.96 C2H2-type zinc finger zf-C2H2_jaz PF12171.8 27 ZNF772-204 - 377 2.4e-14 53.1 41.2 1 9 0.02 15 6.0 3.1 2 22 60 80 59 83 0.78 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF772-204 - 377 2.4e-14 53.1 41.2 2 9 0.00021 0.16 12.3 0.6 2 22 154 174 153 174 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF772-204 - 377 2.4e-14 53.1 41.2 3 9 0.04 31 5.0 0.0 2 13 182 193 181 202 0.80 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF772-204 - 377 2.4e-14 53.1 41.2 4 9 0.00078 0.61 10.4 0.0 2 22 210 230 209 230 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF772-204 - 377 2.4e-14 53.1 41.2 5 9 0.0012 0.93 9.9 0.2 2 22 238 258 237 258 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF772-204 - 377 2.4e-14 53.1 41.2 6 9 0.0039 3 8.2 0.4 2 21 266 285 265 286 0.88 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF772-204 - 377 2.4e-14 53.1 41.2 7 9 0.00023 0.18 12.1 0.1 2 22 294 314 293 314 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF772-204 - 377 2.4e-14 53.1 41.2 8 9 0.0083 6.4 7.2 1.0 2 20 322 340 321 341 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF772-204 - 377 2.4e-14 53.1 41.2 9 9 0.051 40 4.7 0.0 2 22 350 370 349 370 0.89 Zinc-finger double-stranded RNA-binding Zn-ribbon_8 PF09723.10 40 ZNF772-204 - 377 1.9e-09 37.5 43.2 1 9 1.5 1.1e+03 -0.2 0.0 6 16 32 42 30 56 0.70 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF772-204 - 377 1.9e-09 37.5 43.2 2 9 0.41 3.2e+02 1.6 0.7 6 15 60 69 59 82 0.85 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF772-204 - 377 1.9e-09 37.5 43.2 3 9 1.6e-05 0.013 15.6 4.5 6 38 154 193 153 196 0.90 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF772-204 - 377 1.9e-09 37.5 43.2 4 9 0.0048 3.7 7.7 0.4 6 16 182 192 181 204 0.85 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF772-204 - 377 1.9e-09 37.5 43.2 5 9 1.2e-05 0.0097 16.0 0.5 6 35 210 246 208 253 0.92 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF772-204 - 377 1.9e-09 37.5 43.2 6 9 0.02 16 5.7 0.6 6 15 266 275 264 284 0.90 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF772-204 - 377 1.9e-09 37.5 43.2 7 9 0.00017 0.14 12.3 1.8 6 35 294 330 293 336 0.90 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF772-204 - 377 1.9e-09 37.5 43.2 8 9 0.00016 0.12 12.5 4.7 6 38 322 361 319 363 0.88 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF772-204 - 377 1.9e-09 37.5 43.2 9 9 0.0033 2.6 8.3 0.4 6 19 350 363 349 368 0.84 Zinc ribbon domain zf-C2H2_6 PF13912.6 27 ZNF772-204 - 377 7.8e-09 35.3 67.7 1 9 0.85 6.6e+02 0.5 0.1 1 12 31 42 31 56 0.74 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF772-204 - 377 7.8e-09 35.3 67.7 2 9 2.9e-06 0.0022 17.9 2.3 1 24 153 176 153 179 0.90 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF772-204 - 377 7.8e-09 35.3 67.7 3 9 0.0021 1.7 8.8 0.5 2 12 182 192 182 193 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF772-204 - 377 7.8e-09 35.3 67.7 4 9 0.0013 1 9.4 0.4 2 20 210 228 210 233 0.79 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF772-204 - 377 7.8e-09 35.3 67.7 5 9 0.005 3.9 7.6 1.1 2 12 238 248 238 249 0.90 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF772-204 - 377 7.8e-09 35.3 67.7 6 9 0.0021 1.6 8.8 1.7 2 20 266 284 266 288 0.82 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF772-204 - 377 7.8e-09 35.3 67.7 7 9 0.18 1.4e+02 2.7 0.2 2 24 294 316 294 319 0.87 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF772-204 - 377 7.8e-09 35.3 67.7 8 9 0.0013 1 9.4 0.5 2 12 322 332 322 343 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF772-204 - 377 7.8e-09 35.3 67.7 9 9 0.00024 0.18 11.8 0.2 2 18 350 366 350 373 0.79 C2H2-type zinc finger zf_UBZ PF18439.1 32 ZNF772-204 - 377 3.1e-08 33.0 39.1 1 10 0.087 68 3.2 0.0 3 21 32 51 30 51 0.88 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF772-204 - 377 3.1e-08 33.0 39.1 2 10 3.9 3e+03 -2.1 0.6 3 15 60 72 59 79 0.68 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF772-204 - 377 3.1e-08 33.0 39.1 3 10 0.00032 0.25 11.0 0.3 2 20 153 172 152 173 0.80 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF772-204 - 377 3.1e-08 33.0 39.1 4 10 0.0067 5.2 6.7 0.1 3 20 182 200 180 201 0.79 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF772-204 - 377 3.1e-08 33.0 39.1 5 10 0.11 83 2.9 0.1 3 15 210 222 209 229 0.83 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF772-204 - 377 3.1e-08 33.0 39.1 6 10 0.0054 4.2 7.0 0.3 3 17 238 253 236 257 0.76 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF772-204 - 377 3.1e-08 33.0 39.1 7 10 0.011 8.6 6.1 0.2 3 12 266 275 264 278 0.89 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF772-204 - 377 3.1e-08 33.0 39.1 8 10 0.046 36 4.1 0.1 3 21 294 313 292 313 0.89 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF772-204 - 377 3.1e-08 33.0 39.1 9 10 0.0012 0.95 9.1 0.2 3 14 322 333 320 341 0.85 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF772-204 - 377 3.1e-08 33.0 39.1 10 10 0.0079 6.2 6.5 0.1 3 12 350 359 348 365 0.87 Ubiquitin-Binding Zinc Finger # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF772-204.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF772-204.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF772-204.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF772-204.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF772-204.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:14:04 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF772-205.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF772-205.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF772-205.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF772-205.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF772-205.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:14:04 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF772-206.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF772-206.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF772-206.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF772-206.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF772-206.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:14:05 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF772-207.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF772-207.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF772-207.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF772-207.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF772-207.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:14:05 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF772-208.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF772-208.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF772-208.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF772-208.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF772-208.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:14:05 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF772-209.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF772-209.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF772-209.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF772-209.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF772-209.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:14:06 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZNF773-201 - 442 3.9e-70 229.4 75.6 1 11 0.34 2.1e+02 2.6 0.1 2 15 112 125 111 126 0.86 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF773-201 - 442 3.9e-70 229.4 75.6 2 11 0.00092 0.57 10.7 8.1 5 25 165 201 162 202 0.61 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF773-201 - 442 3.9e-70 229.4 75.6 3 11 2.6e-11 1.6e-08 34.6 0.9 2 26 206 230 206 230 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF773-201 - 442 3.9e-70 229.4 75.6 4 11 6.4e-08 4e-05 23.9 0.1 4 25 236 257 233 258 0.90 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF773-201 - 442 3.9e-70 229.4 75.6 5 11 8.3e-12 5.1e-09 36.1 0.6 2 26 262 286 261 286 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF773-201 - 442 3.9e-70 229.4 75.6 6 11 6.1e-09 3.8e-06 27.1 0.6 2 24 290 312 289 313 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF773-201 - 442 3.9e-70 229.4 75.6 7 11 3.3e-11 2e-08 34.2 2.6 1 26 317 342 317 342 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF773-201 - 442 3.9e-70 229.4 75.6 8 11 7.6e-10 4.7e-07 29.9 0.1 2 25 346 369 345 370 0.90 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF773-201 - 442 3.9e-70 229.4 75.6 9 11 5.2e-10 3.2e-07 30.5 1.0 1 25 373 397 373 398 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF773-201 - 442 3.9e-70 229.4 75.6 10 11 3.1e-10 1.9e-07 31.2 2.3 1 26 401 426 401 426 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF773-201 - 442 3.9e-70 229.4 75.6 11 11 0.0089 5.5 7.6 0.2 1 12 429 440 429 441 0.93 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZNF773-201 - 442 1.1e-51 170.5 76.8 1 10 2.5 1.5e+03 -0.1 0.0 13 23 109 119 108 128 0.87 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF773-201 - 442 1.1e-51 170.5 76.8 2 10 1.5e-08 9.2e-06 25.8 0.4 1 23 191 213 191 213 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF773-201 - 442 1.1e-51 170.5 76.8 3 10 2.3e-07 0.00014 22.1 1.1 1 23 219 241 219 241 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF773-201 - 442 1.1e-51 170.5 76.8 4 10 9.6e-09 6e-06 26.4 0.2 3 23 249 269 247 269 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF773-201 - 442 1.1e-51 170.5 76.8 5 10 1.2e-07 7.7e-05 22.9 3.7 1 23 275 297 275 297 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF773-201 - 442 1.1e-51 170.5 76.8 6 10 6.3e-08 3.9e-05 23.9 1.0 1 23 303 325 303 325 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF773-201 - 442 1.1e-51 170.5 76.8 7 10 1.6e-07 0.0001 22.6 2.5 1 23 331 353 331 353 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF773-201 - 442 1.1e-51 170.5 76.8 8 10 4.2e-08 2.6e-05 24.4 1.3 1 23 359 381 359 381 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF773-201 - 442 1.1e-51 170.5 76.8 9 10 1.8e-08 1.1e-05 25.6 1.1 1 23 387 409 387 409 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF773-201 - 442 1.1e-51 170.5 76.8 10 10 6.8e-08 4.2e-05 23.8 3.5 1 23 415 437 415 437 0.98 Zinc finger, C2H2 type KRAB PF01352.27 42 ZNF773-201 - 442 5.4e-24 83.6 0.9 1 1 1.5e-26 9.2e-24 82.8 0.9 2 42 15 55 14 55 0.99 KRAB box zf-C2H2_4 PF13894.6 24 ZNF773-201 - 442 3e-23 80.5 77.3 1 10 6.1 3.8e+03 -0.7 0.0 9 23 155 169 152 170 0.81 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF773-201 - 442 3e-23 80.5 77.3 2 10 3.9e-05 0.024 15.4 0.6 1 23 191 213 191 214 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF773-201 - 442 3e-23 80.5 77.3 3 10 0.00069 0.43 11.6 1.2 1 23 219 241 219 242 0.91 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF773-201 - 442 3e-23 80.5 77.3 4 10 1.5e-05 0.0095 16.7 0.2 2 23 248 269 247 270 0.91 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF773-201 - 442 3e-23 80.5 77.3 5 10 0.00075 0.46 11.5 2.7 1 23 275 297 275 298 0.90 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF773-201 - 442 3e-23 80.5 77.3 6 10 4.7e-05 0.029 15.2 1.1 1 23 303 325 303 326 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF773-201 - 442 3e-23 80.5 77.3 7 10 4.2e-05 0.026 15.4 2.5 1 23 331 353 331 354 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF773-201 - 442 3e-23 80.5 77.3 8 10 2e-05 0.013 16.3 1.5 1 23 359 381 359 382 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF773-201 - 442 3e-23 80.5 77.3 9 10 3.4e-05 0.021 15.6 1.2 1 23 387 409 387 410 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF773-201 - 442 3e-23 80.5 77.3 10 10 0.00077 0.48 11.4 2.8 1 23 415 437 415 438 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF773-201 - 442 2.9e-12 46.3 63.8 1 9 0.00033 0.2 11.7 0.5 1 12 190 201 190 209 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF773-201 - 442 2.9e-12 46.3 63.8 2 9 0.00055 0.34 11.0 0.8 2 12 219 229 219 241 0.88 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF773-201 - 442 2.9e-12 46.3 63.8 3 9 0.002 1.2 9.2 0.2 2 24 247 269 247 272 0.86 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF773-201 - 442 2.9e-12 46.3 63.8 4 9 0.0069 4.3 7.5 1.0 2 12 275 285 275 286 0.91 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF773-201 - 442 2.9e-12 46.3 63.8 5 9 6.9e-05 0.043 13.8 1.3 2 24 303 325 303 328 0.90 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF773-201 - 442 2.9e-12 46.3 63.8 6 9 0.019 12 6.1 1.0 2 11 331 340 331 353 0.82 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF773-201 - 442 2.9e-12 46.3 63.8 7 9 5.5e-05 0.034 14.2 2.2 2 24 359 381 359 384 0.95 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF773-201 - 442 2.9e-12 46.3 63.8 8 9 0.039 24 5.1 1.1 2 20 387 405 387 410 0.76 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF773-201 - 442 2.9e-12 46.3 63.8 9 9 0.007 4.3 7.4 2.0 2 24 415 437 415 440 0.92 C2H2-type zinc finger zf_UBZ PF18439.1 32 ZNF773-201 - 442 1.9e-11 43.3 37.5 1 10 7.9 4.9e+03 -2.8 0.1 12 21 107 116 106 116 0.87 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF773-201 - 442 1.9e-11 43.3 37.5 2 10 0.0057 3.5 7.3 0.1 2 12 190 200 189 210 0.83 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF773-201 - 442 1.9e-11 43.3 37.5 3 10 0.0084 5.2 6.8 0.2 3 14 219 230 217 233 0.86 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF773-201 - 442 1.9e-11 43.3 37.5 4 10 0.0012 0.74 9.5 0.0 3 21 247 266 246 266 0.90 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF773-201 - 442 1.9e-11 43.3 37.5 5 10 0.0038 2.3 7.9 0.2 3 15 275 287 273 294 0.77 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF773-201 - 442 1.9e-11 43.3 37.5 6 10 0.0029 1.8 8.2 0.1 3 20 303 321 301 322 0.83 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF773-201 - 442 1.9e-11 43.3 37.5 7 10 0.012 7.6 6.2 0.1 3 13 331 341 329 349 0.83 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF773-201 - 442 1.9e-11 43.3 37.5 8 10 0.00049 0.3 10.7 0.2 3 20 359 377 357 378 0.90 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF773-201 - 442 1.9e-11 43.3 37.5 9 10 0.021 13 5.5 0.1 3 20 387 405 385 406 0.80 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF773-201 - 442 1.9e-11 43.3 37.5 10 10 0.057 35 4.1 0.2 3 15 415 427 413 433 0.82 Ubiquitin-Binding Zinc Finger zinc_ribbon_15 PF17032.5 86 ZNF773-201 - 442 2.9e-09 37.5 25.2 1 6 0.0007 0.44 11.3 0.9 34 79 187 232 181 235 0.87 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF773-201 - 442 2.9e-09 37.5 25.2 2 6 0.00084 0.52 11.1 0.5 31 78 242 287 232 293 0.80 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF773-201 - 442 2.9e-09 37.5 25.2 3 6 0.00027 0.16 12.7 0.4 29 78 266 315 262 319 0.86 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF773-201 - 442 2.9e-09 37.5 25.2 4 6 0.0012 0.77 10.6 0.7 36 78 301 343 289 346 0.83 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF773-201 - 442 2.9e-09 37.5 25.2 5 6 0.00046 0.28 11.9 0.9 32 78 325 371 318 376 0.87 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF773-201 - 442 2.9e-09 37.5 25.2 6 6 0.00017 0.1 13.3 3.2 26 78 347 399 344 431 0.69 zinc-ribbon family zf-C2H2_jaz PF12171.8 27 ZNF773-201 - 442 5.8e-08 32.8 48.2 1 9 0.094 58 4.1 0.6 2 22 191 211 190 211 0.90 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF773-201 - 442 5.8e-08 32.8 48.2 2 9 0.27 1.7e+02 2.7 0.3 2 15 219 232 218 237 0.84 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF773-201 - 442 5.8e-08 32.8 48.2 3 9 0.022 13 6.2 0.1 4 22 249 267 247 267 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF773-201 - 442 5.8e-08 32.8 48.2 4 9 0.0038 2.4 8.6 0.3 2 20 275 293 274 294 0.96 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF773-201 - 442 5.8e-08 32.8 48.2 5 9 0.068 42 4.6 0.1 2 22 303 323 302 323 0.90 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF773-201 - 442 5.8e-08 32.8 48.2 6 9 0.0031 1.9 8.9 0.5 2 22 331 351 330 351 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF773-201 - 442 5.8e-08 32.8 48.2 7 9 0.0012 0.75 10.2 0.2 2 22 359 379 358 379 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF773-201 - 442 5.8e-08 32.8 48.2 8 9 0.0013 0.78 10.1 0.2 2 22 387 407 386 407 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF773-201 - 442 5.8e-08 32.8 48.2 9 9 0.0018 1.1 9.6 0.1 2 21 415 434 414 435 0.93 Zinc-finger double-stranded RNA-binding C1_1 PF00130.22 53 ZNF773-201 - 442 3.3e-07 30.1 37.8 1 8 0.065 40 4.2 0.4 24 37 186 199 176 203 0.76 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF773-201 - 442 3.3e-07 30.1 37.8 2 8 0.063 39 4.2 0.3 9 24 216 231 207 235 0.75 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF773-201 - 442 3.3e-07 30.1 37.8 3 8 0.00029 0.18 11.7 0.6 1 38 237 284 237 288 0.88 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF773-201 - 442 3.3e-07 30.1 37.8 4 8 0.013 8.1 6.4 3.1 2 36 266 310 263 312 0.79 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF773-201 - 442 3.3e-07 30.1 37.8 5 8 0.0029 1.8 8.5 2.8 9 38 300 340 293 344 0.78 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF773-201 - 442 3.3e-07 30.1 37.8 6 8 6.3e-05 0.039 13.9 2.4 2 36 349 394 349 399 0.88 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF773-201 - 442 3.3e-07 30.1 37.8 7 8 0.0096 5.9 6.9 2.7 4 35 380 421 375 422 0.78 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF773-201 - 442 3.3e-07 30.1 37.8 8 8 0.035 22 5.0 0.4 2 23 406 426 405 434 0.74 Phorbol esters/diacylglycerol binding domain (C1 domain) Zn-ribbon_8 PF09723.10 40 ZNF773-201 - 442 4.8e-07 29.8 47.9 1 8 6.9 4.2e+03 -2.0 0.1 31 39 119 128 118 128 0.83 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF773-201 - 442 4.8e-07 29.8 47.9 2 8 0.00067 0.41 10.8 4.5 6 34 191 226 190 231 0.90 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF773-201 - 442 4.8e-07 29.8 47.9 3 8 0.022 13 6.0 0.5 6 16 219 229 218 241 0.86 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF773-201 - 442 4.8e-07 29.8 47.9 4 8 0.00011 0.069 13.3 1.5 6 36 247 284 245 287 0.88 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF773-201 - 442 4.8e-07 29.8 47.9 5 8 7.7e-05 0.048 13.8 2.2 6 34 303 338 302 344 0.91 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF773-201 - 442 4.8e-07 29.8 47.9 6 8 0.015 9.5 6.4 6.1 6 33 359 393 358 394 0.79 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF773-201 - 442 4.8e-07 29.8 47.9 7 8 0.0014 0.89 9.7 5.1 6 34 387 422 386 426 0.91 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF773-201 - 442 4.8e-07 29.8 47.9 8 8 0.036 22 5.3 1.0 6 16 415 425 413 431 0.82 Zinc ribbon domain # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF773-201.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF773-201.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF773-201.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF773-201.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF773-201.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:14:06 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- KRAB PF01352.27 42 ZNF773-202 - 101 4.3e-25 87.1 0.9 1 1 4.2e-29 7.5e-25 86.3 0.9 2 42 14 54 13 54 0.99 KRAB box # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF773-202.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF773-202.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF773-202.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF773-202.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF773-202.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:14:06 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- KRAB PF01352.27 42 ZNF773-203 - 117 6e-25 86.6 0.9 1 1 5.8e-29 1e-24 85.9 0.9 2 42 15 55 14 55 0.99 KRAB box # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF773-203.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF773-203.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF773-203.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF773-203.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF773-203.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:14:07 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZNF773-204 - 441 3.8e-70 229.4 75.6 1 11 0.34 2.1e+02 2.6 0.1 2 15 111 124 110 125 0.86 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF773-204 - 441 3.8e-70 229.4 75.6 2 11 0.00092 0.57 10.7 8.1 5 25 164 200 161 201 0.61 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF773-204 - 441 3.8e-70 229.4 75.6 3 11 2.6e-11 1.6e-08 34.6 0.9 2 26 205 229 205 229 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF773-204 - 441 3.8e-70 229.4 75.6 4 11 6.4e-08 4e-05 23.9 0.1 4 25 235 256 232 257 0.90 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF773-204 - 441 3.8e-70 229.4 75.6 5 11 8.3e-12 5.1e-09 36.2 0.6 2 26 261 285 260 285 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF773-204 - 441 3.8e-70 229.4 75.6 6 11 6.1e-09 3.8e-06 27.1 0.6 2 24 289 311 288 312 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF773-204 - 441 3.8e-70 229.4 75.6 7 11 3.3e-11 2e-08 34.3 2.6 1 26 316 341 316 341 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF773-204 - 441 3.8e-70 229.4 75.6 8 11 7.6e-10 4.7e-07 29.9 0.1 2 25 345 368 344 369 0.90 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF773-204 - 441 3.8e-70 229.4 75.6 9 11 5.2e-10 3.2e-07 30.5 1.0 1 25 372 396 372 397 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF773-204 - 441 3.8e-70 229.4 75.6 10 11 3.1e-10 1.9e-07 31.2 2.3 1 26 400 425 400 425 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF773-204 - 441 3.8e-70 229.4 75.6 11 11 0.0088 5.5 7.6 0.2 1 12 428 439 428 440 0.93 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZNF773-204 - 441 1e-51 170.6 76.8 1 10 2.5 1.5e+03 -0.1 0.0 13 23 108 118 107 127 0.87 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF773-204 - 441 1e-51 170.6 76.8 2 10 1.5e-08 9.2e-06 25.8 0.4 1 23 190 212 190 212 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF773-204 - 441 1e-51 170.6 76.8 3 10 2.3e-07 0.00014 22.1 1.1 1 23 218 240 218 240 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF773-204 - 441 1e-51 170.6 76.8 4 10 9.6e-09 5.9e-06 26.4 0.2 3 23 248 268 246 268 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF773-204 - 441 1e-51 170.6 76.8 5 10 1.2e-07 7.6e-05 22.9 3.7 1 23 274 296 274 296 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF773-204 - 441 1e-51 170.6 76.8 6 10 6.3e-08 3.9e-05 23.9 1.0 1 23 302 324 302 324 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF773-204 - 441 1e-51 170.6 76.8 7 10 1.6e-07 0.0001 22.6 2.5 1 23 330 352 330 352 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF773-204 - 441 1e-51 170.6 76.8 8 10 4.1e-08 2.6e-05 24.4 1.3 1 23 358 380 358 380 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF773-204 - 441 1e-51 170.6 76.8 9 10 1.8e-08 1.1e-05 25.6 1.1 1 23 386 408 386 408 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF773-204 - 441 1e-51 170.6 76.8 10 10 6.8e-08 4.2e-05 23.8 3.5 1 23 414 436 414 436 0.98 Zinc finger, C2H2 type KRAB PF01352.27 42 ZNF773-204 - 441 5.4e-24 83.6 0.9 1 1 1.5e-26 9.1e-24 82.8 0.9 2 42 14 54 13 54 0.99 KRAB box zf-C2H2_4 PF13894.6 24 ZNF773-204 - 441 2.9e-23 80.5 77.3 1 10 6.1 3.7e+03 -0.7 0.0 9 23 154 168 151 169 0.81 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF773-204 - 441 2.9e-23 80.5 77.3 2 10 3.9e-05 0.024 15.4 0.6 1 23 190 212 190 213 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF773-204 - 441 2.9e-23 80.5 77.3 3 10 0.00069 0.43 11.6 1.2 1 23 218 240 218 241 0.91 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF773-204 - 441 2.9e-23 80.5 77.3 4 10 1.5e-05 0.0095 16.7 0.2 2 23 247 268 246 269 0.91 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF773-204 - 441 2.9e-23 80.5 77.3 5 10 0.00075 0.46 11.5 2.7 1 23 274 296 274 297 0.90 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF773-204 - 441 2.9e-23 80.5 77.3 6 10 4.7e-05 0.029 15.2 1.1 1 23 302 324 302 325 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF773-204 - 441 2.9e-23 80.5 77.3 7 10 4.1e-05 0.026 15.4 2.5 1 23 330 352 330 353 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF773-204 - 441 2.9e-23 80.5 77.3 8 10 2e-05 0.013 16.3 1.5 1 23 358 380 358 381 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF773-204 - 441 2.9e-23 80.5 77.3 9 10 3.4e-05 0.021 15.6 1.2 1 23 386 408 386 409 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF773-204 - 441 2.9e-23 80.5 77.3 10 10 0.00077 0.47 11.4 2.8 1 23 414 436 414 437 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF773-204 - 441 2.8e-12 46.3 63.8 1 9 0.00033 0.2 11.7 0.5 1 12 189 200 189 208 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF773-204 - 441 2.8e-12 46.3 63.8 2 9 0.00055 0.34 11.0 0.8 2 12 218 228 218 240 0.88 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF773-204 - 441 2.8e-12 46.3 63.8 3 9 0.002 1.2 9.2 0.2 2 24 246 268 246 271 0.86 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF773-204 - 441 2.8e-12 46.3 63.8 4 9 0.0069 4.2 7.5 1.0 2 12 274 284 274 285 0.91 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF773-204 - 441 2.8e-12 46.3 63.8 5 9 6.9e-05 0.043 13.8 1.3 2 24 302 324 302 327 0.90 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF773-204 - 441 2.8e-12 46.3 63.8 6 9 0.019 12 6.1 1.0 2 11 330 339 330 352 0.82 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF773-204 - 441 2.8e-12 46.3 63.8 7 9 5.5e-05 0.034 14.2 2.2 2 24 358 380 358 383 0.95 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF773-204 - 441 2.8e-12 46.3 63.8 8 9 0.039 24 5.1 1.1 2 20 386 404 386 409 0.76 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF773-204 - 441 2.8e-12 46.3 63.8 9 9 0.007 4.3 7.4 2.0 2 24 414 436 414 439 0.92 C2H2-type zinc finger zf_UBZ PF18439.1 32 ZNF773-204 - 441 1.9e-11 43.4 37.5 1 10 7.9 4.9e+03 -2.8 0.1 12 21 106 115 105 115 0.87 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF773-204 - 441 1.9e-11 43.4 37.5 2 10 0.0057 3.5 7.3 0.1 2 12 189 199 188 209 0.83 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF773-204 - 441 1.9e-11 43.4 37.5 3 10 0.0083 5.2 6.8 0.2 3 14 218 229 216 232 0.86 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF773-204 - 441 1.9e-11 43.4 37.5 4 10 0.0012 0.73 9.5 0.0 3 21 246 265 245 265 0.90 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF773-204 - 441 1.9e-11 43.4 37.5 5 10 0.0038 2.3 7.9 0.2 3 15 274 286 272 293 0.77 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF773-204 - 441 1.9e-11 43.4 37.5 6 10 0.0029 1.8 8.2 0.1 3 20 302 320 300 321 0.83 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF773-204 - 441 1.9e-11 43.4 37.5 7 10 0.012 7.6 6.2 0.1 3 13 330 340 328 348 0.83 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF773-204 - 441 1.9e-11 43.4 37.5 8 10 0.00049 0.3 10.7 0.2 3 20 358 376 356 377 0.90 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF773-204 - 441 1.9e-11 43.4 37.5 9 10 0.021 13 5.5 0.1 3 20 386 404 384 405 0.80 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF773-204 - 441 1.9e-11 43.4 37.5 10 10 0.056 35 4.1 0.2 3 15 414 426 412 432 0.82 Ubiquitin-Binding Zinc Finger zinc_ribbon_15 PF17032.5 86 ZNF773-204 - 441 2.9e-09 37.6 25.2 1 6 0.0007 0.43 11.3 0.9 34 79 186 231 180 234 0.87 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF773-204 - 441 2.9e-09 37.6 25.2 2 6 0.00084 0.52 11.1 0.5 31 78 241 286 231 292 0.80 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF773-204 - 441 2.9e-09 37.6 25.2 3 6 0.00026 0.16 12.7 0.4 29 78 265 314 261 318 0.86 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF773-204 - 441 2.9e-09 37.6 25.2 4 6 0.0012 0.77 10.6 0.7 36 78 300 342 288 345 0.83 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF773-204 - 441 2.9e-09 37.6 25.2 5 6 0.00046 0.28 12.0 0.9 32 78 324 370 317 375 0.87 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF773-204 - 441 2.9e-09 37.6 25.2 6 6 0.00017 0.1 13.4 3.2 26 78 346 398 343 430 0.69 zinc-ribbon family zf-C2H2_jaz PF12171.8 27 ZNF773-204 - 441 5.7e-08 32.9 48.2 1 9 0.094 58 4.1 0.6 2 22 190 210 189 210 0.90 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF773-204 - 441 5.7e-08 32.9 48.2 2 9 0.27 1.7e+02 2.7 0.3 2 15 218 231 217 236 0.84 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF773-204 - 441 5.7e-08 32.9 48.2 3 9 0.022 13 6.2 0.1 4 22 248 266 246 266 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF773-204 - 441 5.7e-08 32.9 48.2 4 9 0.0038 2.4 8.6 0.3 2 20 274 292 273 293 0.96 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF773-204 - 441 5.7e-08 32.9 48.2 5 9 0.068 42 4.6 0.1 2 22 302 322 301 322 0.90 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF773-204 - 441 5.7e-08 32.9 48.2 6 9 0.0031 1.9 8.9 0.5 2 22 330 350 329 350 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF773-204 - 441 5.7e-08 32.9 48.2 7 9 0.0012 0.74 10.2 0.2 2 22 358 378 357 378 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF773-204 - 441 5.7e-08 32.9 48.2 8 9 0.0013 0.78 10.1 0.2 2 22 386 406 385 406 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF773-204 - 441 5.7e-08 32.9 48.2 9 9 0.0018 1.1 9.6 0.1 2 21 414 433 413 434 0.93 Zinc-finger double-stranded RNA-binding C1_1 PF00130.22 53 ZNF773-204 - 441 3.5e-07 30.0 38.0 1 8 0.065 40 4.2 0.4 24 37 185 198 175 202 0.76 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF773-204 - 441 3.5e-07 30.0 38.0 2 8 0.066 41 4.2 0.3 9 24 215 230 208 234 0.74 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF773-204 - 441 3.5e-07 30.0 38.0 3 8 0.0003 0.18 11.7 0.6 1 38 236 283 236 287 0.88 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF773-204 - 441 3.5e-07 30.0 38.0 4 8 0.013 8.1 6.4 3.1 2 36 265 309 262 311 0.79 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF773-204 - 441 3.5e-07 30.0 38.0 5 8 0.0029 1.8 8.5 2.8 9 38 299 339 292 343 0.78 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF773-204 - 441 3.5e-07 30.0 38.0 6 8 6.2e-05 0.038 13.9 2.4 2 36 348 393 348 398 0.88 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF773-204 - 441 3.5e-07 30.0 38.0 7 8 0.0095 5.9 6.9 2.7 4 35 379 420 374 421 0.78 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF773-204 - 441 3.5e-07 30.0 38.0 8 8 0.035 22 5.0 0.4 2 23 405 425 404 433 0.74 Phorbol esters/diacylglycerol binding domain (C1 domain) Zn-ribbon_8 PF09723.10 40 ZNF773-204 - 441 4.7e-07 29.8 47.9 1 8 6.8 4.2e+03 -2.0 0.1 31 39 118 127 117 127 0.83 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF773-204 - 441 4.7e-07 29.8 47.9 2 8 0.00066 0.41 10.8 4.5 6 34 190 225 189 230 0.90 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF773-204 - 441 4.7e-07 29.8 47.9 3 8 0.022 13 6.0 0.5 6 16 218 228 217 240 0.86 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF773-204 - 441 4.7e-07 29.8 47.9 4 8 0.00011 0.069 13.3 1.5 6 36 246 283 244 286 0.88 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF773-204 - 441 4.7e-07 29.8 47.9 5 8 7.7e-05 0.048 13.8 2.2 6 34 302 337 301 343 0.91 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF773-204 - 441 4.7e-07 29.8 47.9 6 8 0.015 9.5 6.4 6.1 6 33 358 392 357 393 0.79 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF773-204 - 441 4.7e-07 29.8 47.9 7 8 0.0014 0.89 9.7 5.1 6 34 386 421 385 425 0.91 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF773-204 - 441 4.7e-07 29.8 47.9 8 8 0.036 22 5.3 1.0 6 16 414 424 412 430 0.82 Zinc ribbon domain # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF773-204.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF773-204.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF773-204.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF773-204.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF773-204.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:14:07 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- RNase_H PF00075.24 143 ZNF773-205 - 259 1e-10 42.0 0.0 1 1 1.7e-14 1.5e-10 41.4 0.0 6 138 106 227 102 232 0.76 RNase H # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF773-205.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF773-205.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF773-205.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF773-205.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF773-205.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:14:08 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF773-206.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF773-206.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF773-206.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF773-206.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF773-206.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:14:08 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-C2H2 PF00096.26 23 ZNF775-201 - 537 2e-57 188.6 89.2 1 11 1.1e-07 6.9e-05 23.1 0.4 1 23 107 129 107 129 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF775-201 - 537 2e-57 188.6 89.2 2 11 4.7e-08 3e-05 24.2 2.2 1 23 135 157 135 157 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF775-201 - 537 2e-57 188.6 89.2 3 11 1.7e-05 0.011 16.1 6.0 1 23 163 185 163 185 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF775-201 - 537 2e-57 188.6 89.2 4 11 1.2e-05 0.0076 16.6 4.5 1 23 191 213 191 213 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF775-201 - 537 2e-57 188.6 89.2 5 11 1.4e-07 9e-05 22.7 0.2 1 23 281 303 281 303 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF775-201 - 537 2e-57 188.6 89.2 6 11 6.9e-09 4.4e-06 26.8 0.7 1 23 309 331 309 331 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF775-201 - 537 2e-57 188.6 89.2 7 11 3.6e-07 0.00023 21.4 6.1 1 23 337 359 337 359 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF775-201 - 537 2e-57 188.6 89.2 8 11 4.4e-06 0.0028 18.0 1.0 2 23 367 388 367 388 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF775-201 - 537 2e-57 188.6 89.2 9 11 1.9e-07 0.00012 22.3 0.1 1 23 446 468 446 468 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF775-201 - 537 2e-57 188.6 89.2 10 11 5.7e-09 3.6e-06 27.1 1.2 1 23 474 496 474 496 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF775-201 - 537 2e-57 188.6 89.2 11 11 5.6e-07 0.00036 20.8 1.1 1 23 502 524 502 524 0.96 Zinc finger, C2H2 type zf-H2C2_2 PF13465.6 26 ZNF775-201 - 537 5.9e-52 171.9 83.1 1 12 0.17 1.1e+02 3.5 0.1 11 25 103 117 101 117 0.88 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF775-201 - 537 5.9e-52 171.9 83.1 2 12 6.5e-10 4.2e-07 30.1 0.6 2 25 122 145 121 146 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF775-201 - 537 5.9e-52 171.9 83.1 3 12 4.1e-11 2.6e-08 33.9 3.1 1 25 149 173 149 174 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF775-201 - 537 5.9e-52 171.9 83.1 4 12 0.029 18 5.9 8.9 1 26 177 202 177 202 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF775-201 - 537 5.9e-52 171.9 83.1 5 12 0.22 1.4e+02 3.2 0.2 15 25 281 291 275 291 0.82 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF775-201 - 537 5.9e-52 171.9 83.1 6 12 2.8e-10 1.8e-07 31.3 0.1 2 25 296 319 295 320 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF775-201 - 537 5.9e-52 171.9 83.1 7 12 1.1e-10 7.1e-08 32.5 2.5 1 24 323 346 323 348 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF775-201 - 537 5.9e-52 171.9 83.1 8 12 0.0019 1.2 9.7 1.2 1 24 351 375 351 377 0.84 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF775-201 - 537 5.9e-52 171.9 83.1 9 12 0.3 1.9e+02 2.7 0.1 17 25 448 456 441 456 0.82 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF775-201 - 537 5.9e-52 171.9 83.1 10 12 3.1e-10 2e-07 31.1 0.1 1 25 460 484 460 485 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF775-201 - 537 5.9e-52 171.9 83.1 11 12 2.6e-11 1.7e-08 34.5 0.3 1 25 488 512 488 513 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF775-201 - 537 5.9e-52 171.9 83.1 12 12 1.1 7.3e+02 0.9 0.2 1 10 516 525 516 533 0.86 Zinc-finger double domain zf-C2H2_4 PF13894.6 24 ZNF775-201 - 537 1.7e-37 124.8 87.4 1 11 0.00072 0.46 11.5 0.8 1 23 107 129 107 130 0.88 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF775-201 - 537 1.7e-37 124.8 87.4 2 11 3.5e-05 0.022 15.6 1.9 1 23 135 157 135 158 0.90 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF775-201 - 537 1.7e-37 124.8 87.4 3 11 7.1e-06 0.0046 17.7 5.9 1 23 163 185 163 186 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF775-201 - 537 1.7e-37 124.8 87.4 4 11 0.0021 1.3 10.0 3.6 1 23 191 213 191 214 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF775-201 - 537 1.7e-37 124.8 87.4 5 11 0.00079 0.51 11.3 0.3 1 23 281 303 281 304 0.89 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF775-201 - 537 1.7e-37 124.8 87.4 6 11 2.4e-07 0.00016 22.3 0.4 1 23 309 331 309 332 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF775-201 - 537 1.7e-37 124.8 87.4 7 11 5.6e-07 0.00036 21.1 4.5 1 23 337 359 337 360 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF775-201 - 537 1.7e-37 124.8 87.4 8 11 1.7e-05 0.011 16.5 0.7 2 23 367 388 367 389 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF775-201 - 537 1.7e-37 124.8 87.4 9 11 0.00087 0.56 11.2 0.2 1 23 446 468 446 469 0.86 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF775-201 - 537 1.7e-37 124.8 87.4 10 11 4.8e-07 0.00031 21.3 0.6 1 23 474 496 474 497 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF775-201 - 537 1.7e-37 124.8 87.4 11 11 5.1e-06 0.0032 18.2 1.3 1 23 502 524 502 525 0.94 C2H2-type zinc finger Zn-ribbon_8 PF09723.10 40 ZNF775-201 - 537 2.6e-15 56.3 44.4 1 8 4.3e-05 0.027 14.6 0.0 6 35 107 143 106 148 0.86 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF775-201 - 537 2.6e-15 56.3 44.4 2 8 0.0015 0.95 9.6 3.8 6 34 135 170 134 176 0.82 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF775-201 - 537 2.6e-15 56.3 44.4 3 8 0.0058 3.7 7.7 7.9 6 33 163 197 161 204 0.90 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF775-201 - 537 2.6e-15 56.3 44.4 4 8 4.5e-07 0.00029 20.9 0.1 6 35 281 317 280 322 0.88 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF775-201 - 537 2.6e-15 56.3 44.4 5 8 5.1e-05 0.032 14.3 4.5 6 35 309 345 308 350 0.80 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF775-201 - 537 2.6e-15 56.3 44.4 6 8 0.64 4.1e+02 1.2 9.0 8 37 339 376 338 378 0.72 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF775-201 - 537 2.6e-15 56.3 44.4 7 8 9.5e-07 0.00061 19.9 0.5 6 35 446 482 445 486 0.89 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF775-201 - 537 2.6e-15 56.3 44.4 8 8 0.023 15 5.8 0.2 6 16 502 512 491 531 0.66 Zinc ribbon domain zf-C2H2_6 PF13912.6 27 ZNF775-201 - 537 3.3e-14 52.5 74.7 1 11 0.14 89 3.3 0.6 1 24 106 129 106 132 0.80 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF775-201 - 537 3.3e-14 52.5 74.7 2 11 0.07 45 4.2 2.1 2 24 135 157 135 160 0.86 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF775-201 - 537 3.3e-14 52.5 74.7 3 11 0.0015 0.97 9.5 4.8 2 26 163 187 163 188 0.95 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF775-201 - 537 3.3e-14 52.5 74.7 4 11 0.0067 4.3 7.5 2.5 2 24 191 213 190 215 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF775-201 - 537 3.3e-14 52.5 74.7 5 11 0.0004 0.26 11.4 0.1 2 12 281 291 280 304 0.79 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF775-201 - 537 3.3e-14 52.5 74.7 6 11 0.00014 0.092 12.8 0.1 2 24 309 331 309 334 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF775-201 - 537 3.3e-14 52.5 74.7 7 11 0.0044 2.8 8.0 2.8 2 25 337 360 337 361 0.96 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF775-201 - 537 3.3e-14 52.5 74.7 8 11 0.0034 2.2 8.4 0.5 4 24 368 388 367 389 0.95 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF775-201 - 537 3.3e-14 52.5 74.7 9 11 0.00023 0.15 12.1 0.1 2 18 446 462 445 469 0.78 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF775-201 - 537 3.3e-14 52.5 74.7 10 11 4.4e-05 0.028 14.4 0.1 2 24 474 496 474 499 0.95 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF775-201 - 537 3.3e-14 52.5 74.7 11 11 0.049 32 4.7 1.2 2 26 502 526 502 527 0.94 C2H2-type zinc finger DUF3268 PF11672.8 118 ZNF775-201 - 537 2.6e-07 31.0 21.2 1 6 0.00019 0.12 12.7 0.2 4 41 108 145 106 154 0.88 zinc-finger-containing domain DUF3268 PF11672.8 118 ZNF775-201 - 537 2.6e-07 31.0 21.2 2 6 2.7 1.8e+03 -0.7 1.2 4 43 164 203 158 217 0.61 zinc-finger-containing domain DUF3268 PF11672.8 118 ZNF775-201 - 537 2.6e-07 31.0 21.2 3 6 7.4e-05 0.048 14.0 0.1 4 40 282 318 279 328 0.88 zinc-finger-containing domain DUF3268 PF11672.8 118 ZNF775-201 - 537 2.6e-07 31.0 21.2 4 6 0.68 4.4e+02 1.2 0.1 4 42 338 377 335 389 0.64 zinc-finger-containing domain DUF3268 PF11672.8 118 ZNF775-201 - 537 2.6e-07 31.0 21.2 5 6 0.00027 0.17 12.2 0.1 4 39 447 482 444 492 0.88 zinc-finger-containing domain DUF3268 PF11672.8 118 ZNF775-201 - 537 2.6e-07 31.0 21.2 6 6 0.019 12 6.2 0.3 5 37 476 508 476 516 0.90 zinc-finger-containing domain zf_UBZ PF18439.1 32 ZNF775-201 - 537 3.1e-07 29.8 44.9 1 11 0.0047 3 7.5 0.0 2 15 106 119 105 126 0.82 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF775-201 - 537 3.1e-07 29.8 44.9 2 11 0.0041 2.6 7.7 0.1 3 20 135 153 133 154 0.79 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF775-201 - 537 3.1e-07 29.8 44.9 3 11 0.53 3.4e+02 0.9 1.4 4 15 164 175 162 182 0.77 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF775-201 - 537 3.1e-07 29.8 44.9 4 11 0.48 3e+02 1.1 1.4 2 12 190 200 189 203 0.79 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF775-201 - 537 3.1e-07 29.8 44.9 5 11 0.0092 5.9 6.6 0.1 2 15 280 293 279 300 0.80 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF775-201 - 537 3.1e-07 29.8 44.9 6 11 0.0045 2.9 7.6 0.1 3 15 309 321 307 328 0.79 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF775-201 - 537 3.1e-07 29.8 44.9 7 11 0.42 2.7e+02 1.3 0.1 3 12 337 346 336 354 0.83 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF775-201 - 537 3.1e-07 29.8 44.9 8 11 0.43 2.8e+02 1.2 0.4 4 12 367 375 365 385 0.77 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF775-201 - 537 3.1e-07 29.8 44.9 9 11 0.0029 1.9 8.2 0.1 2 16 445 460 444 465 0.80 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF775-201 - 537 3.1e-07 29.8 44.9 10 11 0.0024 1.5 8.4 0.1 3 14 474 485 472 493 0.81 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF775-201 - 537 3.1e-07 29.8 44.9 11 11 0.053 34 4.1 0.1 3 15 502 514 500 521 0.80 Ubiquitin-Binding Zinc Finger DZR PF12773.7 49 ZNF775-201 - 537 4.7e-07 29.7 44.7 1 3 1.6 1.1e+03 -0.2 14.0 10 48 132 196 101 203 0.66 Double zinc ribbon DZR PF12773.7 49 ZNF775-201 - 537 4.7e-07 29.7 44.7 2 3 0.0011 0.73 9.9 9.8 1 48 283 371 274 381 0.52 Double zinc ribbon DZR PF12773.7 49 ZNF775-201 - 537 4.7e-07 29.7 44.7 3 3 0.00012 0.076 13.0 5.0 15 49 448 508 439 531 0.57 Double zinc ribbon CpXC PF14353.6 118 ZNF775-201 - 537 6.8e-07 29.4 36.2 1 11 0.24 1.5e+02 2.4 0.0 38 60 107 129 99 132 0.89 CpXC protein CpXC PF14353.6 118 ZNF775-201 - 537 6.8e-07 29.4 36.2 2 11 0.76 4.9e+02 0.8 0.1 39 59 136 156 133 159 0.80 CpXC protein CpXC PF14353.6 118 ZNF775-201 - 537 6.8e-07 29.4 36.2 3 11 0.11 70 3.5 0.9 38 61 163 186 161 190 0.89 CpXC protein CpXC PF14353.6 118 ZNF775-201 - 537 6.8e-07 29.4 36.2 4 11 0.073 47 4.1 0.4 37 60 190 213 187 216 0.88 CpXC protein CpXC PF14353.6 118 ZNF775-201 - 537 6.8e-07 29.4 36.2 5 11 0.041 26 4.9 0.0 35 58 278 301 275 304 0.84 CpXC protein CpXC PF14353.6 118 ZNF775-201 - 537 6.8e-07 29.4 36.2 6 11 0.027 18 5.4 0.6 3 54 283 325 283 334 0.66 CpXC protein CpXC PF14353.6 118 ZNF775-201 - 537 6.8e-07 29.4 36.2 7 11 0.17 1.1e+02 2.9 1.5 24 57 322 356 311 367 0.64 CpXC protein CpXC PF14353.6 118 ZNF775-201 - 537 6.8e-07 29.4 36.2 8 11 0.0029 1.8 8.6 1.0 37 72 365 400 339 419 0.86 CpXC protein CpXC PF14353.6 118 ZNF775-201 - 537 6.8e-07 29.4 36.2 9 11 0.038 24 5.0 0.0 35 58 443 466 440 472 0.86 CpXC protein CpXC PF14353.6 118 ZNF775-201 - 537 6.8e-07 29.4 36.2 10 11 0.1 65 3.6 0.1 39 59 475 495 471 498 0.82 CpXC protein CpXC PF14353.6 118 ZNF775-201 - 537 6.8e-07 29.4 36.2 11 11 0.012 7.8 6.6 0.2 38 72 502 536 500 537 0.90 CpXC protein # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF775-201.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF775-201.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF775-201.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF775-201.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF775-201.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:14:08 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF775-202.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF775-202.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF775-202.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF775-202.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF775-202.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:14:09 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZNF776-201 - 518 3.2e-68 223.3 85.8 1 12 0.89 1.6e+03 -0.2 0.2 6 15 133 142 128 157 0.67 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF776-201 - 518 3.2e-68 223.3 85.8 2 12 0.78 1.4e+03 -0.0 0.1 2 18 223 239 220 247 0.76 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF776-201 - 518 3.2e-68 223.3 85.8 3 12 1.1e-06 0.002 18.5 0.0 2 25 251 274 250 275 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF776-201 - 518 3.2e-68 223.3 85.8 4 12 1.4e-11 2.5e-08 34.0 2.1 1 26 278 303 278 303 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF776-201 - 518 3.2e-68 223.3 85.8 5 12 1.3e-12 2.4e-09 37.2 0.4 1 26 306 331 306 331 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF776-201 - 518 3.2e-68 223.3 85.8 6 12 4.1e-11 7.3e-08 32.5 1.4 2 26 335 359 334 359 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF776-201 - 518 3.2e-68 223.3 85.8 7 12 9.4e-11 1.7e-07 31.3 0.1 1 25 362 386 362 387 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF776-201 - 518 3.2e-68 223.3 85.8 8 12 3.2e-11 5.8e-08 32.8 4.1 1 25 390 414 390 415 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF776-201 - 518 3.2e-68 223.3 85.8 9 12 1.5e-09 2.6e-06 27.6 5.3 1 24 418 441 418 443 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF776-201 - 518 3.2e-68 223.3 85.8 10 12 2.3e-07 0.00041 20.7 1.8 2 24 447 469 446 471 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF776-201 - 518 3.2e-68 223.3 85.8 11 12 1.8e-08 3.3e-05 24.1 0.9 2 25 475 498 474 499 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF776-201 - 518 3.2e-68 223.3 85.8 12 12 5e-05 0.09 13.3 2.8 1 17 502 518 502 518 0.96 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZNF776-201 - 518 1.9e-46 154.0 97.8 1 11 0.0069 12 6.5 0.1 5 21 209 228 207 229 0.86 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF776-201 - 518 1.9e-46 154.0 97.8 2 11 3.7 6.7e+03 -2.1 0.1 7 19 242 254 236 255 0.61 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF776-201 - 518 1.9e-46 154.0 97.8 3 11 1.9e-06 0.0035 17.7 0.9 1 23 264 286 264 286 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF776-201 - 518 1.9e-46 154.0 97.8 4 11 1.2e-08 2.2e-05 24.7 3.0 1 23 292 314 292 314 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF776-201 - 518 1.9e-46 154.0 97.8 5 11 1e-08 1.9e-05 24.9 3.9 1 23 320 342 320 342 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF776-201 - 518 1.9e-46 154.0 97.8 6 11 7.4e-09 1.3e-05 25.3 3.5 1 23 348 370 348 370 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF776-201 - 518 1.9e-46 154.0 97.8 7 11 1.4e-07 0.00026 21.3 1.9 1 23 376 398 376 398 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF776-201 - 518 1.9e-46 154.0 97.8 8 11 2.6e-08 4.7e-05 23.6 4.6 1 23 404 426 404 426 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF776-201 - 518 1.9e-46 154.0 97.8 9 11 5.8e-07 0.001 19.4 2.9 1 23 432 454 432 454 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF776-201 - 518 1.9e-46 154.0 97.8 10 11 5.4e-07 0.00098 19.5 3.8 1 23 460 482 460 482 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF776-201 - 518 1.9e-46 154.0 97.8 11 11 3.1e-09 5.6e-06 26.5 2.6 1 23 488 510 488 510 0.97 Zinc finger, C2H2 type KRAB PF01352.27 42 ZNF776-201 - 518 9.8e-22 76.3 0.3 1 1 1e-24 1.8e-21 75.5 0.3 2 42 14 54 13 54 0.98 KRAB box zf-C2H2_4 PF13894.6 24 ZNF776-201 - 518 5.9e-20 70.3 94.0 1 12 10 1.8e+04 -3.6 0.0 14 20 75 81 73 82 0.75 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF776-201 - 518 5.9e-20 70.3 94.0 2 12 1.8 3.2e+03 -0.5 0.0 7 21 214 228 208 229 0.74 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF776-201 - 518 5.9e-20 70.3 94.0 3 12 2.4 4.3e+03 -0.9 0.1 6 19 238 254 236 256 0.76 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF776-201 - 518 5.9e-20 70.3 94.0 4 12 0.00014 0.26 12.2 1.2 1 23 264 286 264 287 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF776-201 - 518 5.9e-20 70.3 94.0 5 12 7.8e-05 0.14 13.1 2.6 1 23 292 314 292 315 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF776-201 - 518 5.9e-20 70.3 94.0 6 12 9.6e-06 0.017 15.9 3.4 1 23 320 342 320 343 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF776-201 - 518 5.9e-20 70.3 94.0 7 12 3.9e-05 0.07 14.0 3.0 1 23 348 370 348 371 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF776-201 - 518 5.9e-20 70.3 94.0 8 12 1.9e-05 0.033 15.0 1.8 1 23 376 398 376 399 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF776-201 - 518 5.9e-20 70.3 94.0 9 12 8.6e-05 0.15 12.9 3.7 1 23 404 426 404 427 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF776-201 - 518 5.9e-20 70.3 94.0 10 12 4e-05 0.071 14.0 2.9 1 23 432 454 432 455 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF776-201 - 518 5.9e-20 70.3 94.0 11 12 0.00013 0.24 12.3 3.7 1 23 460 482 460 483 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF776-201 - 518 5.9e-20 70.3 94.0 12 12 7e-05 0.13 13.2 2.4 1 23 488 510 488 511 0.93 C2H2-type zinc finger # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF776-201.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF776-201.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF776-201.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF776-201.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF776-201.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:14:09 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- KRAB PF01352.27 42 ZNF776-202 - 58 2.3e-23 81.6 0.3 1 1 1.5e-27 2.7e-23 81.3 0.3 2 42 14 54 13 54 0.98 KRAB box # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF776-202.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF776-202.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF776-202.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF776-202.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF776-202.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:14:09 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF776-203.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF776-203.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF776-203.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF776-203.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF776-203.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:14:10 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF776-204.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF776-204.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF776-204.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF776-204.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF776-204.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:14:10 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF776-205.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF776-205.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF776-205.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF776-205.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF776-205.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:14:10 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZNF777-201 - 831 2.2e-48 160.6 79.4 1 11 1.5e-05 0.016 15.6 0.0 8 24 539 555 524 556 0.90 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF777-201 - 831 2.2e-48 160.6 79.4 2 11 7.5e-06 0.0079 16.6 0.2 2 25 561 584 560 585 0.87 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF777-201 - 831 2.2e-48 160.6 79.4 3 11 4.3 4.6e+03 -1.6 0.3 2 11 589 598 588 600 0.85 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF777-201 - 831 2.2e-48 160.6 79.4 4 11 7.6e-06 0.008 16.6 1.4 11 26 632 647 631 647 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF777-201 - 831 2.2e-48 160.6 79.4 5 11 4.8e-11 5.1e-08 33.0 1.6 1 24 650 673 650 674 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF777-201 - 831 2.2e-48 160.6 79.4 6 11 0.00015 0.15 12.5 0.1 2 25 679 704 678 705 0.90 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF777-201 - 831 2.2e-48 160.6 79.4 7 11 1.8e-11 1.9e-08 34.4 2.7 1 25 708 732 708 733 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF777-201 - 831 2.2e-48 160.6 79.4 8 11 3.6e-08 3.8e-05 23.9 3.4 2 24 737 759 736 761 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF777-201 - 831 2.2e-48 160.6 79.4 9 11 2.9e-09 3.1e-06 27.4 2.2 1 25 764 788 764 789 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF777-201 - 831 2.2e-48 160.6 79.4 10 11 4.1e-06 0.0043 17.4 6.0 2 25 793 816 792 817 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF777-201 - 831 2.2e-48 160.6 79.4 11 11 0.0019 2 9.0 0.3 1 12 820 831 820 831 0.93 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZNF777-201 - 831 2.2e-39 131.7 90.5 1 9 4e-07 0.00042 20.6 0.5 1 23 546 568 546 568 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF777-201 - 831 2.2e-39 131.7 90.5 2 9 2.1e-06 0.0022 18.4 1.1 1 23 574 596 574 596 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF777-201 - 831 2.2e-39 131.7 90.5 3 9 5.7e-08 6.1e-05 23.3 3.1 1 23 636 658 636 658 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF777-201 - 831 2.2e-39 131.7 90.5 4 9 1.6e-06 0.0017 18.7 1.5 1 23 664 686 664 686 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF777-201 - 831 2.2e-39 131.7 90.5 5 9 9.7e-10 1e-06 28.9 2.9 1 23 694 716 694 716 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF777-201 - 831 2.2e-39 131.7 90.5 6 9 4.9e-06 0.0052 17.2 3.5 1 23 722 744 722 744 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF777-201 - 831 2.2e-39 131.7 90.5 7 9 3.7e-07 0.00039 20.7 4.3 1 23 750 772 750 772 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF777-201 - 831 2.2e-39 131.7 90.5 8 9 4.1e-06 0.0043 17.4 5.5 1 23 778 800 778 800 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF777-201 - 831 2.2e-39 131.7 90.5 9 9 4.6e-05 0.048 14.1 7.9 1 23 806 828 806 828 0.99 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZNF777-201 - 831 1.1e-21 75.6 83.8 1 9 0.0012 1.3 10.0 0.2 1 23 546 568 546 569 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF777-201 - 831 1.1e-21 75.6 83.8 2 9 0.015 15 6.7 1.2 1 23 574 596 574 597 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF777-201 - 831 1.1e-21 75.6 83.8 3 9 5.1e-05 0.054 14.4 2.5 1 23 636 658 636 659 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF777-201 - 831 1.1e-21 75.6 83.8 4 9 0.0018 1.9 9.5 1.0 1 23 664 686 664 687 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF777-201 - 831 1.1e-21 75.6 83.8 5 9 1.3e-07 0.00014 22.4 2.3 1 23 694 716 694 717 0.97 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF777-201 - 831 1.1e-21 75.6 83.8 6 9 4.3e-06 0.0045 17.7 3.8 1 23 722 744 722 745 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF777-201 - 831 1.1e-21 75.6 83.8 7 9 6.4e-05 0.067 14.1 3.4 1 23 750 772 750 773 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF777-201 - 831 1.1e-21 75.6 83.8 8 9 0.00026 0.27 12.2 4.7 1 23 778 800 778 801 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF777-201 - 831 1.1e-21 75.6 83.8 9 9 5.7e-05 0.06 14.2 6.4 1 23 806 828 806 829 0.96 C2H2-type zinc finger KRAB PF01352.27 42 ZNF777-201 - 831 8.3e-20 70.2 0.5 1 1 2e-22 2.1e-19 68.9 0.5 1 42 284 325 284 325 0.98 KRAB box DUF3669 PF12417.8 72 ZNF777-201 - 831 1.9e-09 37.6 0.1 1 1 4.4e-12 4.6e-09 36.4 0.1 2 71 189 254 188 255 0.91 Zinc finger protein zf-C2H2_jaz PF12171.8 27 ZNF777-201 - 831 9.1e-07 29.0 53.4 1 10 1.5 1.6e+03 -0.5 0.0 13 25 226 238 225 238 0.80 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF777-201 - 831 9.1e-07 29.0 53.4 2 10 0.32 3.4e+02 1.7 0.1 2 12 546 556 545 569 0.85 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF777-201 - 831 9.1e-07 29.0 53.4 3 10 0.0066 6.9 7.1 0.4 2 22 574 594 573 594 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF777-201 - 831 9.1e-07 29.0 53.4 4 10 0.0014 1.5 9.2 1.0 2 22 636 656 635 658 0.90 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF777-201 - 831 9.1e-07 29.0 53.4 5 10 0.024 26 5.3 0.1 2 20 664 682 663 684 0.76 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF777-201 - 831 9.1e-07 29.0 53.4 6 10 8.4e-05 0.089 13.1 0.2 2 24 694 716 693 716 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF777-201 - 831 9.1e-07 29.0 53.4 7 10 9e-05 0.095 13.0 1.0 2 22 722 742 721 742 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF777-201 - 831 9.1e-07 29.0 53.4 8 10 0.003 3.2 8.2 0.1 2 21 750 769 749 770 0.90 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF777-201 - 831 9.1e-07 29.0 53.4 9 10 1.9 2e+03 -0.8 1.1 4 21 780 797 777 798 0.83 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF777-201 - 831 9.1e-07 29.0 53.4 10 10 0.056 59 4.1 2.6 2 24 806 828 805 828 0.92 Zinc-finger double-stranded RNA-binding # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF777-201.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF777-201.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF777-201.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF777-201.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF777-201.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:14:11 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZNF778-201 - 687 3.7e-110 355.9 123.9 1 19 3.3 4e+03 -1.4 0.1 20 26 133 139 132 139 0.84 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF778-201 - 687 3.7e-110 355.9 123.9 2 19 0.00083 1 9.9 0.2 9 25 205 221 203 222 0.88 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF778-201 - 687 3.7e-110 355.9 123.9 3 19 0.27 3.2e+02 2.0 0.2 8 23 232 247 230 248 0.76 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF778-201 - 687 3.7e-110 355.9 123.9 4 19 6e-07 0.00071 19.9 0.8 1 25 253 277 253 277 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF778-201 - 687 3.7e-110 355.9 123.9 5 19 2.9e-06 0.0035 17.7 0.2 1 23 281 303 281 305 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF778-201 - 687 3.7e-110 355.9 123.9 6 19 4.6e-07 0.00055 20.2 1.0 2 26 310 334 310 334 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF778-201 - 687 3.7e-110 355.9 123.9 7 19 5.7e-11 6.8e-08 32.6 0.2 2 25 338 361 338 361 0.97 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF778-201 - 687 3.7e-110 355.9 123.9 8 19 2.7e-12 3.2e-09 36.8 0.6 1 24 365 388 365 388 0.97 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF778-201 - 687 3.7e-110 355.9 123.9 9 19 7.6e-12 9.1e-09 35.4 0.7 1 25 393 417 393 417 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF778-201 - 687 3.7e-110 355.9 123.9 10 19 1.2e-11 1.5e-08 34.7 0.4 1 25 421 445 421 445 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF778-201 - 687 3.7e-110 355.9 123.9 11 19 6.6e-13 7.9e-10 38.7 1.0 1 25 449 473 449 474 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF778-201 - 687 3.7e-110 355.9 123.9 12 19 1e-07 0.00012 22.3 1.4 2 26 478 502 478 502 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF778-201 - 687 3.7e-110 355.9 123.9 13 19 1.1e-10 1.3e-07 31.7 0.4 2 25 506 529 506 529 0.97 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF778-201 - 687 3.7e-110 355.9 123.9 14 19 2.7e-13 3.2e-10 40.0 0.6 1 26 533 558 533 558 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF778-201 - 687 3.7e-110 355.9 123.9 15 19 4.4e-10 5.3e-07 29.8 0.4 2 26 562 586 561 586 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF778-201 - 687 3.7e-110 355.9 123.9 16 19 1.6e-08 1.9e-05 24.8 1.2 1 24 589 612 589 613 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF778-201 - 687 3.7e-110 355.9 123.9 17 19 4e-08 4.8e-05 23.6 4.3 4 25 620 641 616 642 0.87 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF778-201 - 687 3.7e-110 355.9 123.9 18 19 0.00019 0.23 12.0 0.6 2 26 646 670 646 670 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF778-201 - 687 3.7e-110 355.9 123.9 19 19 0.068 82 3.9 0.5 2 15 674 687 674 687 0.93 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZNF778-201 - 687 7.2e-91 293.9 134.6 1 20 0.0032 3.9 8.1 0.2 3 22 75 96 74 96 0.91 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF778-201 - 687 7.2e-91 293.9 134.6 2 20 0.37 4.5e+02 1.6 0.0 5 15 132 142 131 145 0.80 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF778-201 - 687 7.2e-91 293.9 134.6 3 20 2.9 3.5e+03 -1.2 0.0 6 17 160 171 158 172 0.87 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF778-201 - 687 7.2e-91 293.9 134.6 4 20 0.0019 2.3 8.9 0.2 1 16 211 226 211 227 0.87 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF778-201 - 687 7.2e-91 293.9 134.6 5 20 0.00012 0.14 12.6 0.0 3 23 239 261 238 261 0.94 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF778-201 - 687 7.2e-91 293.9 134.6 6 20 1.6e-05 0.02 15.4 0.3 2 22 268 288 267 288 0.92 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF778-201 - 687 7.2e-91 293.9 134.6 7 20 6.8e-05 0.081 13.4 0.5 1 23 295 317 295 317 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF778-201 - 687 7.2e-91 293.9 134.6 8 20 1.3e-06 0.0016 18.8 1.5 1 23 323 345 323 345 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF778-201 - 687 7.2e-91 293.9 134.6 9 20 1.2e-07 0.00015 22.1 2.9 1 23 351 373 351 373 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF778-201 - 687 7.2e-91 293.9 134.6 10 20 3.5e-09 4.2e-06 26.9 1.8 1 23 379 401 379 401 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF778-201 - 687 7.2e-91 293.9 134.6 11 20 5.1e-09 6.1e-06 26.4 0.3 1 23 407 429 407 429 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF778-201 - 687 7.2e-91 293.9 134.6 12 20 1.8e-09 2.1e-06 27.9 0.8 1 23 435 457 435 457 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF778-201 - 687 7.2e-91 293.9 134.6 13 20 1e-07 0.00012 22.3 0.3 1 23 463 485 463 485 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF778-201 - 687 7.2e-91 293.9 134.6 14 20 3.2e-07 0.00038 20.7 3.1 1 23 491 513 491 513 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF778-201 - 687 7.2e-91 293.9 134.6 15 20 5.7e-10 6.8e-07 29.4 0.7 1 23 519 541 519 541 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF778-201 - 687 7.2e-91 293.9 134.6 16 20 1.2e-10 1.5e-07 31.5 1.0 1 23 547 569 547 569 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF778-201 - 687 7.2e-91 293.9 134.6 17 20 8.4e-09 1e-05 25.7 1.0 1 23 575 597 575 597 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF778-201 - 687 7.2e-91 293.9 134.6 18 20 8.9e-08 0.00011 22.5 2.0 1 23 603 625 603 625 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF778-201 - 687 7.2e-91 293.9 134.6 19 20 6.1e-07 0.00073 19.9 0.8 1 22 631 652 631 652 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF778-201 - 687 7.2e-91 293.9 134.6 20 20 5.7e-08 6.8e-05 23.1 5.0 1 23 659 681 659 681 0.98 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZNF778-201 - 687 1.1e-52 172.1 128.7 1 20 0.0019 2.3 9.3 0.2 4 22 78 96 75 98 0.90 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF778-201 - 687 1.1e-52 172.1 128.7 2 20 1.8 2.2e+03 0.0 0.0 5 13 132 140 131 144 0.83 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF778-201 - 687 1.1e-52 172.1 128.7 3 20 1.7 2.1e+03 0.1 0.0 5 17 159 171 158 177 0.81 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF778-201 - 687 1.1e-52 172.1 128.7 4 20 0.05 60 4.9 0.1 1 16 211 226 211 234 0.69 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF778-201 - 687 1.1e-52 172.1 128.7 5 20 0.045 54 5.0 0.1 3 23 239 261 237 262 0.88 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF778-201 - 687 1.1e-52 172.1 128.7 6 20 5.6e-05 0.067 14.1 0.2 2 22 268 288 267 290 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF778-201 - 687 1.1e-52 172.1 128.7 7 20 0.16 1.9e+02 3.3 0.8 1 19 295 313 295 318 0.81 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF778-201 - 687 1.1e-52 172.1 128.7 8 20 1.3e-05 0.016 16.0 1.5 1 23 323 345 323 346 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF778-201 - 687 1.1e-52 172.1 128.7 9 20 1.5e-06 0.0018 19.0 2.1 1 23 351 373 351 374 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF778-201 - 687 1.1e-52 172.1 128.7 10 20 2.4e-06 0.0029 18.3 1.5 1 23 379 401 379 402 0.97 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF778-201 - 687 1.1e-52 172.1 128.7 11 20 3.8e-05 0.045 14.6 0.3 1 23 407 429 407 430 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF778-201 - 687 1.1e-52 172.1 128.7 12 20 1.8e-07 0.00022 21.8 0.5 1 23 435 457 435 458 0.97 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF778-201 - 687 1.1e-52 172.1 128.7 13 20 1.2e-05 0.015 16.1 0.3 1 23 463 485 463 486 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF778-201 - 687 1.1e-52 172.1 128.7 14 20 1.1e-05 0.013 16.3 2.5 1 23 491 513 491 514 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF778-201 - 687 1.1e-52 172.1 128.7 15 20 2.9e-06 0.0035 18.1 0.5 1 23 519 541 519 542 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF778-201 - 687 1.1e-52 172.1 128.7 16 20 3e-07 0.00035 21.1 0.9 1 23 547 569 547 570 0.97 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF778-201 - 687 1.1e-52 172.1 128.7 17 20 2.2e-06 0.0027 18.4 0.9 1 23 575 597 575 598 0.97 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF778-201 - 687 1.1e-52 172.1 128.7 18 20 0.0019 2.3 9.3 1.2 1 19 603 621 603 625 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF778-201 - 687 1.1e-52 172.1 128.7 19 20 0.0001 0.12 13.3 0.7 1 22 631 652 631 653 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF778-201 - 687 1.1e-52 172.1 128.7 20 20 8.4e-05 0.1 13.5 4.1 1 23 659 681 659 682 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF778-201 - 687 9.8e-21 73.3 122.4 1 18 5.7 6.8e+03 -2.8 0.1 5 12 78 85 78 93 0.81 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF778-201 - 687 9.8e-21 73.3 122.4 2 18 0.73 8.7e+02 0.1 0.1 6 13 132 139 132 140 0.91 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF778-201 - 687 9.8e-21 73.3 122.4 3 18 0.0053 6.4 6.9 0.2 2 13 211 222 211 224 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF778-201 - 687 9.8e-21 73.3 122.4 4 18 0.0031 3.7 7.6 0.5 3 17 268 282 268 285 0.76 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF778-201 - 687 9.8e-21 73.3 122.4 5 18 0.18 2.1e+02 2.0 2.2 2 24 295 317 295 320 0.86 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF778-201 - 687 9.8e-21 73.3 122.4 6 18 0.74 8.8e+02 0.1 0.6 2 12 323 333 323 334 0.86 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF778-201 - 687 9.8e-21 73.3 122.4 7 18 0.0059 7.1 6.8 1.2 2 12 351 361 351 374 0.85 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF778-201 - 687 9.8e-21 73.3 122.4 8 18 0.0069 8.2 6.5 2.0 2 24 379 401 379 404 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF778-201 - 687 9.8e-21 73.3 122.4 9 18 0.00085 1 9.5 0.5 2 20 407 425 407 431 0.85 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF778-201 - 687 9.8e-21 73.3 122.4 10 18 6.6e-06 0.0079 16.2 1.4 2 24 435 457 435 460 0.95 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF778-201 - 687 9.8e-21 73.3 122.4 11 18 6e-05 0.072 13.1 0.4 2 25 463 486 463 488 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF778-201 - 687 9.8e-21 73.3 122.4 12 18 0.0098 12 6.1 2.1 2 12 491 501 491 509 0.91 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF778-201 - 687 9.8e-21 73.3 122.4 13 18 0.00018 0.21 11.6 0.5 2 24 519 541 519 544 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF778-201 - 687 9.8e-21 73.3 122.4 14 18 6.6e-05 0.079 13.0 0.6 2 24 547 569 547 572 0.85 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF778-201 - 687 9.8e-21 73.3 122.4 15 18 3.3e-07 0.00039 20.3 1.1 2 24 575 597 575 600 0.95 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF778-201 - 687 9.8e-21 73.3 122.4 16 18 0.0021 2.5 8.2 0.1 2 12 603 613 603 614 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF778-201 - 687 9.8e-21 73.3 122.4 17 18 5.5e-06 0.0066 16.4 1.5 2 24 631 653 631 656 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF778-201 - 687 9.8e-21 73.3 122.4 18 18 0.0056 6.7 6.8 1.1 1 12 658 669 658 671 0.93 C2H2-type zinc finger zf-C2H2_jaz PF12171.8 27 ZNF778-201 - 687 5.8e-15 55.1 75.5 1 16 5.3 6.3e+03 -2.4 0.1 2 11 211 220 210 221 0.83 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF778-201 - 687 5.8e-15 55.1 75.5 2 16 0.2 2.4e+02 2.2 0.0 4 21 269 286 268 290 0.79 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF778-201 - 687 5.8e-15 55.1 75.5 3 16 3 3.6e+03 -1.6 0.5 2 10 295 303 294 306 0.83 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF778-201 - 687 5.8e-15 55.1 75.5 4 16 5.7e-05 0.068 13.5 0.3 2 22 323 343 322 343 0.91 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF778-201 - 687 5.8e-15 55.1 75.5 5 16 0.73 8.7e+02 0.4 0.3 2 11 351 360 350 361 0.87 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF778-201 - 687 5.8e-15 55.1 75.5 6 16 0.037 44 4.5 0.2 2 24 379 401 378 401 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF778-201 - 687 5.8e-15 55.1 75.5 7 16 0.067 80 3.7 0.1 2 20 407 425 406 425 0.84 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF778-201 - 687 5.8e-15 55.1 75.5 8 16 0.0022 2.6 8.4 0.0 2 24 435 457 434 457 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF778-201 - 687 5.8e-15 55.1 75.5 9 16 0.0028 3.3 8.1 0.3 2 24 463 485 462 485 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF778-201 - 687 5.8e-15 55.1 75.5 10 16 0.00039 0.46 10.8 0.8 2 21 491 510 490 511 0.91 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF778-201 - 687 5.8e-15 55.1 75.5 11 16 0.00055 0.65 10.3 0.1 2 24 519 541 518 541 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF778-201 - 687 5.8e-15 55.1 75.5 12 16 6.3e-05 0.076 13.3 0.1 2 24 547 569 546 569 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF778-201 - 687 5.8e-15 55.1 75.5 13 16 9.2e-05 0.11 12.8 0.2 2 24 575 597 574 597 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF778-201 - 687 5.8e-15 55.1 75.5 14 16 0.42 5e+02 1.2 0.4 2 20 603 621 602 621 0.82 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF778-201 - 687 5.8e-15 55.1 75.5 15 16 0.006 7.2 7.0 0.4 2 23 631 652 630 652 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF778-201 - 687 5.8e-15 55.1 75.5 16 16 0.031 38 4.7 1.9 2 14 659 671 658 677 0.90 Zinc-finger double-stranded RNA-binding Zn-ribbon_8 PF09723.10 40 ZNF778-201 - 687 4.9e-09 36.2 89.6 1 17 5.4 6.4e+03 -2.6 0.0 9 18 78 87 76 94 0.77 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF778-201 - 687 4.9e-09 36.2 89.6 2 17 0.12 1.4e+02 2.7 0.3 28 35 211 219 197 223 0.59 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF778-201 - 687 4.9e-09 36.2 89.6 3 17 0.29 3.5e+02 1.4 1.5 8 16 213 221 211 250 0.66 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF778-201 - 687 4.9e-09 36.2 89.6 4 17 0.17 2.1e+02 2.1 3.6 19 35 258 275 239 279 0.70 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF778-201 - 687 4.9e-09 36.2 89.6 5 17 0.061 73 3.6 8.1 7 34 268 302 266 304 0.71 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF778-201 - 687 4.9e-09 36.2 89.6 6 17 1.5 1.8e+03 -0.9 6.0 6 15 295 304 294 333 0.63 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF778-201 - 687 4.9e-09 36.2 89.6 7 17 1.7 2e+03 -1.0 0.2 6 15 323 332 322 340 0.85 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF778-201 - 687 4.9e-09 36.2 89.6 8 17 0.0067 8 6.7 5.0 6 34 351 386 348 390 0.81 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF778-201 - 687 4.9e-09 36.2 89.6 9 17 9.6e-06 0.012 15.8 3.6 6 34 407 442 406 445 0.77 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF778-201 - 687 4.9e-09 36.2 89.6 10 17 3.1e-06 0.0037 17.3 2.5 6 39 435 475 433 476 0.85 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF778-201 - 687 4.9e-09 36.2 89.6 11 17 0.0035 4.1 7.6 2.1 6 34 463 498 462 502 0.79 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF778-201 - 687 4.9e-09 36.2 89.6 12 17 3e-05 0.035 14.2 2.9 6 34 519 554 518 557 0.75 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF778-201 - 687 4.9e-09 36.2 89.6 13 17 3.4e-05 0.041 14.0 1.1 6 34 547 582 546 586 0.83 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF778-201 - 687 4.9e-09 36.2 89.6 14 17 0.00019 0.23 11.6 2.1 6 36 575 612 574 615 0.85 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF778-201 - 687 4.9e-09 36.2 89.6 15 17 0.00017 0.2 11.8 2.7 6 38 603 642 601 644 0.82 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF778-201 - 687 4.9e-09 36.2 89.6 16 17 0.0071 8.5 6.6 5.1 6 34 631 666 629 669 0.75 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF778-201 - 687 4.9e-09 36.2 89.6 17 17 0.022 26 5.0 0.6 6 16 659 669 658 684 0.86 Zinc ribbon domain zf-trcl PF13451.6 48 ZNF778-201 - 687 6.9e-08 32.3 74.2 1 14 0.0058 7 6.6 0.1 5 18 211 224 209 225 0.89 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF778-201 - 687 6.9e-08 32.3 74.2 2 14 0.037 44 4.1 0.5 3 15 265 277 263 281 0.87 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF778-201 - 687 6.9e-08 32.3 74.2 3 14 0.15 1.7e+02 2.2 1.5 3 12 293 302 291 304 0.85 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF778-201 - 687 6.9e-08 32.3 74.2 4 14 0.36 4.2e+02 0.9 0.1 2 14 320 332 319 333 0.87 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF778-201 - 687 6.9e-08 32.3 74.2 5 14 0.095 1.1e+02 2.8 0.1 3 15 349 361 349 363 0.90 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF778-201 - 687 6.9e-08 32.3 74.2 6 14 0.0017 2 8.3 0.6 3 15 377 389 375 393 0.87 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF778-201 - 687 6.9e-08 32.3 74.2 7 14 0.0019 2.2 8.2 0.1 3 15 405 417 403 422 0.87 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF778-201 - 687 6.9e-08 32.3 74.2 8 14 0.015 18 5.3 0.1 3 15 433 445 431 449 0.89 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF778-201 - 687 6.9e-08 32.3 74.2 9 14 0.27 3.2e+02 1.3 4.1 3 13 461 471 459 504 0.57 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF778-201 - 687 6.9e-08 32.3 74.2 10 14 0.0029 3.5 7.6 0.1 3 15 517 529 517 536 0.87 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF778-201 - 687 6.9e-08 32.3 74.2 11 14 0.042 50 3.9 0.1 3 15 545 557 543 560 0.88 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF778-201 - 687 6.9e-08 32.3 74.2 12 14 0.011 13 5.8 0.1 3 14 573 584 571 588 0.89 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF778-201 - 687 6.9e-08 32.3 74.2 13 14 0.08 95 3.0 3.4 3 41 601 638 599 642 0.58 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF778-201 - 687 6.9e-08 32.3 74.2 14 14 0.0029 3.5 7.6 0.4 3 14 657 668 655 671 0.88 Probable zinc-ribbon domain XPA_N PF01286.18 32 ZNF778-201 - 687 1.9e-07 31.0 78.1 1 18 8 9.5e+03 -3.2 0.1 6 12 132 138 132 139 0.83 XPA protein N-terminal XPA_N PF01286.18 32 ZNF778-201 - 687 1.9e-07 31.0 78.1 2 18 5.8 6.9e+03 -2.8 0.0 7 16 160 170 159 172 0.64 XPA protein N-terminal XPA_N PF01286.18 32 ZNF778-201 - 687 1.9e-07 31.0 78.1 3 18 0.0067 8 6.6 0.0 3 14 212 223 210 227 0.77 XPA protein N-terminal XPA_N PF01286.18 32 ZNF778-201 - 687 1.9e-07 31.0 78.1 4 18 0.014 17 5.6 0.8 3 12 268 277 266 283 0.91 XPA protein N-terminal XPA_N PF01286.18 32 ZNF778-201 - 687 1.9e-07 31.0 78.1 5 18 0.078 93 3.2 0.3 3 18 296 311 294 314 0.85 XPA protein N-terminal XPA_N PF01286.18 32 ZNF778-201 - 687 1.9e-07 31.0 78.1 6 18 0.56 6.7e+02 0.5 0.4 4 15 325 336 323 341 0.80 XPA protein N-terminal XPA_N PF01286.18 32 ZNF778-201 - 687 1.9e-07 31.0 78.1 7 18 0.4 4.7e+02 0.9 0.0 3 12 352 361 350 362 0.88 XPA protein N-terminal XPA_N PF01286.18 32 ZNF778-201 - 687 1.9e-07 31.0 78.1 8 18 0.0026 3.1 7.9 0.6 3 14 380 391 378 394 0.93 XPA protein N-terminal XPA_N PF01286.18 32 ZNF778-201 - 687 1.9e-07 31.0 78.1 9 18 0.0098 12 6.1 0.2 3 14 408 419 406 423 0.90 XPA protein N-terminal XPA_N PF01286.18 32 ZNF778-201 - 687 1.9e-07 31.0 78.1 10 18 0.041 49 4.1 0.1 3 12 436 445 434 448 0.90 XPA protein N-terminal XPA_N PF01286.18 32 ZNF778-201 - 687 1.9e-07 31.0 78.1 11 18 0.034 40 4.4 0.1 3 18 464 479 462 481 0.88 XPA protein N-terminal XPA_N PF01286.18 32 ZNF778-201 - 687 1.9e-07 31.0 78.1 12 18 0.96 1.2e+03 -0.3 0.6 4 14 493 503 490 508 0.75 XPA protein N-terminal XPA_N PF01286.18 32 ZNF778-201 - 687 1.9e-07 31.0 78.1 13 18 0.006 7.2 6.7 0.1 3 14 520 531 518 535 0.90 XPA protein N-terminal XPA_N PF01286.18 32 ZNF778-201 - 687 1.9e-07 31.0 78.1 14 18 0.027 32 4.7 0.1 3 14 548 559 546 562 0.90 XPA protein N-terminal XPA_N PF01286.18 32 ZNF778-201 - 687 1.9e-07 31.0 78.1 15 18 0.0014 1.7 8.7 0.1 3 14 576 587 574 592 0.90 XPA protein N-terminal XPA_N PF01286.18 32 ZNF778-201 - 687 1.9e-07 31.0 78.1 16 18 0.0082 9.8 6.3 0.1 3 14 604 615 602 620 0.87 XPA protein N-terminal XPA_N PF01286.18 32 ZNF778-201 - 687 1.9e-07 31.0 78.1 17 18 0.018 21 5.2 0.2 3 18 632 647 630 649 0.85 XPA protein N-terminal XPA_N PF01286.18 32 ZNF778-201 - 687 1.9e-07 31.0 78.1 18 18 0.013 15 5.7 1.6 3 14 660 671 659 677 0.85 XPA protein N-terminal # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF778-201.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF778-201.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF778-201.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF778-201.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF778-201.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:14:11 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZNF778-202 - 757 3e-109 353.0 123.9 1 19 3.7 4.4e+03 -1.6 0.1 20 26 203 209 202 209 0.84 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF778-202 - 757 3e-109 353.0 123.9 2 19 0.00093 1.1 9.8 0.2 9 25 275 291 273 292 0.88 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF778-202 - 757 3e-109 353.0 123.9 3 19 0.3 3.5e+02 1.9 0.2 8 23 302 317 300 318 0.76 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF778-202 - 757 3e-109 353.0 123.9 4 19 6.7e-07 0.0008 19.7 0.8 1 25 323 347 323 347 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF778-202 - 757 3e-109 353.0 123.9 5 19 3.3e-06 0.0039 17.6 0.2 1 23 351 373 351 375 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF778-202 - 757 3e-109 353.0 123.9 6 19 5.1e-07 0.00062 20.1 1.0 2 26 380 404 380 404 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF778-202 - 757 3e-109 353.0 123.9 7 19 6.4e-11 7.6e-08 32.4 0.2 2 25 408 431 408 431 0.97 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF778-202 - 757 3e-109 353.0 123.9 8 19 3e-12 3.6e-09 36.6 0.6 1 24 435 458 435 458 0.97 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF778-202 - 757 3e-109 353.0 123.9 9 19 8.5e-12 1e-08 35.2 0.7 1 25 463 487 463 487 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF778-202 - 757 3e-109 353.0 123.9 10 19 1.4e-11 1.7e-08 34.5 0.4 1 25 491 515 491 515 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF778-202 - 757 3e-109 353.0 123.9 11 19 7.4e-13 8.9e-10 38.6 1.0 1 25 519 543 519 544 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF778-202 - 757 3e-109 353.0 123.9 12 19 1.1e-07 0.00014 22.2 1.4 2 26 548 572 548 572 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF778-202 - 757 3e-109 353.0 123.9 13 19 1.3e-10 1.5e-07 31.5 0.4 2 25 576 599 576 599 0.97 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF778-202 - 757 3e-109 353.0 123.9 14 19 3e-13 3.6e-10 39.8 0.6 1 26 603 628 603 628 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF778-202 - 757 3e-109 353.0 123.9 15 19 5e-10 5.9e-07 29.6 0.4 2 26 632 656 631 656 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF778-202 - 757 3e-109 353.0 123.9 16 19 1.8e-08 2.2e-05 24.7 1.2 1 24 659 682 659 683 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF778-202 - 757 3e-109 353.0 123.9 17 19 4.5e-08 5.3e-05 23.4 4.3 4 25 690 711 686 712 0.87 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF778-202 - 757 3e-109 353.0 123.9 18 19 0.00021 0.25 11.8 0.6 2 26 716 740 716 740 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF778-202 - 757 3e-109 353.0 123.9 19 19 0.076 91 3.7 0.5 2 15 744 757 744 757 0.93 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZNF778-202 - 757 6.1e-90 291.0 134.6 1 20 0.0036 4.3 8.0 0.2 3 22 145 166 144 166 0.90 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF778-202 - 757 6.1e-90 291.0 134.6 2 20 0.42 5e+02 1.5 0.0 5 15 202 212 201 215 0.80 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF778-202 - 757 6.1e-90 291.0 134.6 3 20 3.2 3.8e+03 -1.3 0.0 6 17 230 241 228 242 0.87 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF778-202 - 757 6.1e-90 291.0 134.6 4 20 0.0021 2.5 8.7 0.2 1 16 281 296 281 297 0.87 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF778-202 - 757 6.1e-90 291.0 134.6 5 20 0.00013 0.16 12.5 0.0 3 23 309 331 308 331 0.94 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF778-202 - 757 6.1e-90 291.0 134.6 6 20 1.8e-05 0.022 15.2 0.3 2 22 338 358 337 358 0.92 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF778-202 - 757 6.1e-90 291.0 134.6 7 20 7.6e-05 0.09 13.3 0.5 1 23 365 387 365 387 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF778-202 - 757 6.1e-90 291.0 134.6 8 20 1.5e-06 0.0017 18.7 1.5 1 23 393 415 393 415 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF778-202 - 757 6.1e-90 291.0 134.6 9 20 1.4e-07 0.00016 21.9 2.9 1 23 421 443 421 443 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF778-202 - 757 6.1e-90 291.0 134.6 10 20 3.9e-09 4.7e-06 26.8 1.8 1 23 449 471 449 471 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF778-202 - 757 6.1e-90 291.0 134.6 11 20 5.7e-09 6.9e-06 26.2 0.3 1 23 477 499 477 499 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF778-202 - 757 6.1e-90 291.0 134.6 12 20 2e-09 2.4e-06 27.7 0.8 1 23 505 527 505 527 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF778-202 - 757 6.1e-90 291.0 134.6 13 20 1.2e-07 0.00014 22.1 0.3 1 23 533 555 533 555 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF778-202 - 757 6.1e-90 291.0 134.6 14 20 3.6e-07 0.00043 20.6 3.1 1 23 561 583 561 583 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF778-202 - 757 6.1e-90 291.0 134.6 15 20 6.4e-10 7.6e-07 29.3 0.7 1 23 589 611 589 611 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF778-202 - 757 6.1e-90 291.0 134.6 16 20 1.4e-10 1.6e-07 31.4 1.0 1 23 617 639 617 639 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF778-202 - 757 6.1e-90 291.0 134.6 17 20 9.4e-09 1.1e-05 25.6 1.0 1 23 645 667 645 667 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF778-202 - 757 6.1e-90 291.0 134.6 18 20 1e-07 0.00012 22.3 2.0 1 23 673 695 673 695 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF778-202 - 757 6.1e-90 291.0 134.6 19 20 6.8e-07 0.00082 19.7 0.8 1 22 701 722 701 722 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF778-202 - 757 6.1e-90 291.0 134.6 20 20 6.4e-08 7.6e-05 22.9 5.0 1 23 729 751 729 751 0.98 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZNF778-202 - 757 9.4e-52 169.2 128.7 1 20 0.0022 2.6 9.1 0.2 4 22 148 166 145 168 0.90 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF778-202 - 757 9.4e-52 169.2 128.7 2 20 2 2.4e+03 -0.1 0.0 5 13 202 210 201 214 0.83 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF778-202 - 757 9.4e-52 169.2 128.7 3 20 1.9 2.3e+03 -0.1 0.0 5 17 229 241 228 247 0.81 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF778-202 - 757 9.4e-52 169.2 128.7 4 20 0.056 67 4.7 0.1 1 16 281 296 281 304 0.69 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF778-202 - 757 9.4e-52 169.2 128.7 5 20 0.051 61 4.9 0.1 3 23 309 331 307 332 0.88 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF778-202 - 757 9.4e-52 169.2 128.7 6 20 6.3e-05 0.075 13.9 0.2 2 22 338 358 337 360 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF778-202 - 757 9.4e-52 169.2 128.7 7 20 0.18 2.2e+02 3.1 0.8 1 19 365 383 365 388 0.81 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF778-202 - 757 9.4e-52 169.2 128.7 8 20 1.5e-05 0.018 15.9 1.5 1 23 393 415 393 416 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF778-202 - 757 9.4e-52 169.2 128.7 9 20 1.7e-06 0.002 18.8 2.1 1 23 421 443 421 444 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF778-202 - 757 9.4e-52 169.2 128.7 10 20 2.7e-06 0.0032 18.2 1.5 1 23 449 471 449 472 0.97 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF778-202 - 757 9.4e-52 169.2 128.7 11 20 4.2e-05 0.051 14.4 0.3 1 23 477 499 477 500 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF778-202 - 757 9.4e-52 169.2 128.7 12 20 2.1e-07 0.00025 21.6 0.5 1 23 505 527 505 528 0.97 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF778-202 - 757 9.4e-52 169.2 128.7 13 20 1.4e-05 0.017 15.9 0.3 1 23 533 555 533 556 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF778-202 - 757 9.4e-52 169.2 128.7 14 20 1.2e-05 0.014 16.2 2.5 1 23 561 583 561 584 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF778-202 - 757 9.4e-52 169.2 128.7 15 20 3.2e-06 0.0039 17.9 0.5 1 23 589 611 589 612 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF778-202 - 757 9.4e-52 169.2 128.7 16 20 3.3e-07 0.0004 21.0 0.9 1 23 617 639 617 640 0.97 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF778-202 - 757 9.4e-52 169.2 128.7 17 20 2.5e-06 0.003 18.3 0.9 1 23 645 667 645 668 0.97 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF778-202 - 757 9.4e-52 169.2 128.7 18 20 0.0021 2.5 9.2 1.2 1 19 673 691 673 695 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF778-202 - 757 9.4e-52 169.2 128.7 19 20 0.00011 0.13 13.1 0.7 1 22 701 722 701 723 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF778-202 - 757 9.4e-52 169.2 128.7 20 20 9.5e-05 0.11 13.4 4.1 1 23 729 751 729 752 0.93 C2H2-type zinc finger KRAB PF01352.27 42 ZNF778-202 - 757 6.9e-27 92.8 0.6 1 1 1e-29 1.2e-26 92.0 0.6 2 42 42 82 41 82 0.98 KRAB box zf-C2H2_6 PF13912.6 27 ZNF778-202 - 757 3.9e-20 71.4 121.8 1 18 8.2 9.8e+03 -3.3 0.0 5 12 148 155 148 157 0.86 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF778-202 - 757 3.9e-20 71.4 121.8 2 18 0.81 9.6e+02 -0.0 0.1 6 13 202 209 202 210 0.91 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF778-202 - 757 3.9e-20 71.4 121.8 3 18 0.0059 7.1 6.8 0.2 2 13 281 292 281 294 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF778-202 - 757 3.9e-20 71.4 121.8 4 18 0.0035 4.2 7.5 0.5 3 17 338 352 338 355 0.76 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF778-202 - 757 3.9e-20 71.4 121.8 5 18 0.2 2.4e+02 1.9 2.2 2 24 365 387 365 390 0.86 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF778-202 - 757 3.9e-20 71.4 121.8 6 18 0.82 9.8e+02 -0.1 0.6 2 12 393 403 393 404 0.86 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF778-202 - 757 3.9e-20 71.4 121.8 7 18 0.0066 7.9 6.6 1.2 2 12 421 431 421 444 0.85 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF778-202 - 757 3.9e-20 71.4 121.8 8 18 0.0077 9.2 6.4 2.0 2 24 449 471 449 474 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF778-202 - 757 3.9e-20 71.4 121.8 9 18 0.00094 1.1 9.3 0.5 2 20 477 495 477 501 0.85 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF778-202 - 757 3.9e-20 71.4 121.8 10 18 7.4e-06 0.0088 16.0 1.4 2 24 505 527 505 530 0.95 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF778-202 - 757 3.9e-20 71.4 121.8 11 18 6.7e-05 0.08 13.0 0.4 2 25 533 556 533 558 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF778-202 - 757 3.9e-20 71.4 121.8 12 18 0.011 13 5.9 2.1 2 12 561 571 561 579 0.91 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF778-202 - 757 3.9e-20 71.4 121.8 13 18 0.0002 0.23 11.5 0.5 2 24 589 611 589 614 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF778-202 - 757 3.9e-20 71.4 121.8 14 18 7.4e-05 0.088 12.8 0.6 2 24 617 639 617 642 0.85 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF778-202 - 757 3.9e-20 71.4 121.8 15 18 3.6e-07 0.00043 20.2 1.1 2 24 645 667 645 670 0.95 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF778-202 - 757 3.9e-20 71.4 121.8 16 18 0.0023 2.8 8.0 0.1 2 12 673 683 673 684 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF778-202 - 757 3.9e-20 71.4 121.8 17 18 6.2e-06 0.0074 16.3 1.5 2 24 701 723 701 726 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF778-202 - 757 3.9e-20 71.4 121.8 18 18 0.0063 7.5 6.7 1.1 1 12 728 739 728 741 0.93 C2H2-type zinc finger zf-C2H2_jaz PF12171.8 27 ZNF778-202 - 757 7.4e-14 51.6 76.8 1 16 5.9 7e+03 -2.5 0.1 2 11 281 290 280 291 0.83 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF778-202 - 757 7.4e-14 51.6 76.8 2 16 0.22 2.7e+02 2.0 0.0 4 21 339 356 338 360 0.79 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF778-202 - 757 7.4e-14 51.6 76.8 3 16 5 6e+03 -2.3 0.9 2 9 365 372 364 375 0.83 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF778-202 - 757 7.4e-14 51.6 76.8 4 16 6.4e-05 0.076 13.3 0.3 2 22 393 413 392 413 0.91 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF778-202 - 757 7.4e-14 51.6 76.8 5 16 0.81 9.7e+02 0.2 0.3 2 11 421 430 420 431 0.87 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF778-202 - 757 7.4e-14 51.6 76.8 6 16 0.041 49 4.4 0.2 2 24 449 471 448 471 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF778-202 - 757 7.4e-14 51.6 76.8 7 16 0.075 90 3.5 0.1 2 20 477 495 476 495 0.84 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF778-202 - 757 7.4e-14 51.6 76.8 8 16 0.0024 2.9 8.3 0.0 2 24 505 527 504 527 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF778-202 - 757 7.4e-14 51.6 76.8 9 16 0.0031 3.7 7.9 0.3 2 24 533 555 532 555 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF778-202 - 757 7.4e-14 51.6 76.8 10 16 0.00043 0.52 10.7 0.8 2 21 561 580 560 581 0.91 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF778-202 - 757 7.4e-14 51.6 76.8 11 16 0.00061 0.73 10.2 0.1 2 24 589 611 588 611 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF778-202 - 757 7.4e-14 51.6 76.8 12 16 7.1e-05 0.084 13.2 0.1 2 24 617 639 616 639 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF778-202 - 757 7.4e-14 51.6 76.8 13 16 0.0001 0.12 12.7 0.2 2 24 645 667 644 667 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF778-202 - 757 7.4e-14 51.6 76.8 14 16 0.47 5.6e+02 1.0 0.4 2 20 673 691 672 691 0.82 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF778-202 - 757 7.4e-14 51.6 76.8 15 16 0.0067 8 6.9 0.4 2 23 701 722 700 722 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF778-202 - 757 7.4e-14 51.6 76.8 16 16 0.035 42 4.6 1.9 2 14 729 741 728 747 0.90 Zinc-finger double-stranded RNA-binding Zn-ribbon_8 PF09723.10 40 ZNF778-202 - 757 4.3e-09 36.3 87.5 1 17 6 7.2e+03 -2.8 0.0 9 18 148 157 146 164 0.77 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF778-202 - 757 4.3e-09 36.3 87.5 2 17 0.14 1.7e+02 2.5 0.4 28 35 281 289 267 294 0.60 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF778-202 - 757 4.3e-09 36.3 87.5 3 17 0.2 2.4e+02 1.9 1.2 8 16 283 291 273 318 0.70 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF778-202 - 757 4.3e-09 36.3 87.5 4 17 0.062 74 3.6 2.0 19 35 328 345 309 349 0.70 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF778-202 - 757 4.3e-09 36.3 87.5 5 17 0.024 29 4.9 6.7 7 34 338 372 337 375 0.71 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF778-202 - 757 4.3e-09 36.3 87.5 6 17 0.99 1.2e+03 -0.3 5.3 6 15 365 374 364 403 0.63 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF778-202 - 757 4.3e-09 36.3 87.5 7 17 1.9 2.3e+03 -1.2 0.1 6 15 393 402 392 408 0.84 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF778-202 - 757 4.3e-09 36.3 87.5 8 17 0.0065 7.7 6.7 4.8 6 34 421 456 418 460 0.81 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF778-202 - 757 4.3e-09 36.3 87.5 9 17 9.8e-06 0.012 15.7 3.4 6 34 477 512 476 515 0.77 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF778-202 - 757 4.3e-09 36.3 87.5 10 17 3.6e-06 0.0043 17.1 2.5 6 39 505 545 504 546 0.85 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF778-202 - 757 4.3e-09 36.3 87.5 11 17 0.0039 4.7 7.4 2.1 6 34 533 568 532 572 0.79 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF778-202 - 757 4.3e-09 36.3 87.5 12 17 5.5e-05 0.066 13.3 2.9 6 34 589 624 588 625 0.75 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF778-202 - 757 4.3e-09 36.3 87.5 13 17 3.8e-05 0.046 13.9 1.1 6 34 617 652 616 656 0.83 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF778-202 - 757 4.3e-09 36.3 87.5 14 17 0.00023 0.27 11.4 2.2 6 36 645 682 643 685 0.85 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF778-202 - 757 4.3e-09 36.3 87.5 15 17 0.00025 0.29 11.3 3.0 6 38 673 712 672 714 0.81 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF778-202 - 757 4.3e-09 36.3 87.5 16 17 0.0082 9.8 6.4 5.2 6 34 701 736 699 739 0.75 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF778-202 - 757 4.3e-09 36.3 87.5 17 17 0.025 30 4.8 0.5 6 16 729 739 728 753 0.87 Zinc ribbon domain zf-trcl PF13451.6 48 ZNF778-202 - 757 3.9e-07 29.9 74.3 1 14 0.0065 7.8 6.5 0.1 5 18 281 294 279 295 0.89 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF778-202 - 757 3.9e-07 29.9 74.3 2 14 0.041 49 3.9 0.5 3 15 335 347 333 351 0.87 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF778-202 - 757 3.9e-07 29.9 74.3 3 14 0.16 1.9e+02 2.0 1.5 3 12 363 372 361 374 0.85 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF778-202 - 757 3.9e-07 29.9 74.3 4 14 0.4 4.7e+02 0.8 0.1 2 14 390 402 389 403 0.87 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF778-202 - 757 3.9e-07 29.9 74.3 5 14 0.11 1.3e+02 2.6 0.1 3 15 419 431 419 433 0.90 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF778-202 - 757 3.9e-07 29.9 74.3 6 14 0.0019 2.3 8.2 0.6 3 15 447 459 445 463 0.87 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF778-202 - 757 3.9e-07 29.9 74.3 7 14 0.0021 2.5 8.1 0.1 3 15 475 487 473 493 0.87 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF778-202 - 757 3.9e-07 29.9 74.3 8 14 0.017 20 5.2 0.1 3 15 503 515 501 519 0.89 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF778-202 - 757 3.9e-07 29.9 74.3 9 14 0.27 3.3e+02 1.3 4.0 3 13 531 541 529 574 0.57 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF778-202 - 757 3.9e-07 29.9 74.3 10 14 0.0033 3.9 7.4 0.1 3 15 587 599 587 606 0.87 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF778-202 - 757 3.9e-07 29.9 74.3 11 14 0.047 56 3.7 0.1 3 15 615 627 613 630 0.88 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF778-202 - 757 3.9e-07 29.9 74.3 12 14 0.012 14 5.6 0.1 3 14 643 654 641 658 0.89 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF778-202 - 757 3.9e-07 29.9 74.3 13 14 0.095 1.1e+02 2.8 3.5 3 41 671 708 669 712 0.58 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF778-202 - 757 3.9e-07 29.9 74.3 14 14 0.0033 3.9 7.4 0.4 3 14 727 738 725 741 0.88 Probable zinc-ribbon domain # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF778-202.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF778-202.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF778-202.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF778-202.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF778-202.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:14:12 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF778-203.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF778-203.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF778-203.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF778-203.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF778-203.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:14:12 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF778-204.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF778-204.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF778-204.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF778-204.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF778-204.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:14:13 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF778-205.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF778-205.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF778-205.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF778-205.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF778-205.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:14:13 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF778-206.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF778-206.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF778-206.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF778-206.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF778-206.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:14:13 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZNF778-207 - 729 1.3e-109 354.1 123.9 1 19 3.6 4.3e+03 -1.5 0.1 20 26 175 181 174 181 0.84 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF778-207 - 729 1.3e-109 354.1 123.9 2 19 0.00089 1.1 9.9 0.2 9 25 247 263 245 264 0.88 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF778-207 - 729 1.3e-109 354.1 123.9 3 19 0.28 3.4e+02 1.9 0.2 8 23 274 289 272 290 0.76 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF778-207 - 729 1.3e-109 354.1 123.9 4 19 6.4e-07 0.00076 19.8 0.8 1 25 295 319 295 319 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF778-207 - 729 1.3e-109 354.1 123.9 5 19 3.1e-06 0.0037 17.6 0.2 1 23 323 345 323 347 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF778-207 - 729 1.3e-109 354.1 123.9 6 19 4.9e-07 0.00059 20.2 1.0 2 26 352 376 352 376 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF778-207 - 729 1.3e-109 354.1 123.9 7 19 6.1e-11 7.3e-08 32.5 0.2 2 25 380 403 380 403 0.97 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF778-207 - 729 1.3e-109 354.1 123.9 8 19 2.9e-12 3.4e-09 36.7 0.6 1 24 407 430 407 430 0.97 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF778-207 - 729 1.3e-109 354.1 123.9 9 19 8.1e-12 9.7e-09 35.3 0.7 1 25 435 459 435 459 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF778-207 - 729 1.3e-109 354.1 123.9 10 19 1.3e-11 1.6e-08 34.6 0.4 1 25 463 487 463 487 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF778-207 - 729 1.3e-109 354.1 123.9 11 19 7.1e-13 8.5e-10 38.6 1.0 1 25 491 515 491 516 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF778-207 - 729 1.3e-109 354.1 123.9 12 19 1.1e-07 0.00013 22.2 1.4 2 26 520 544 520 544 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF778-207 - 729 1.3e-109 354.1 123.9 13 19 1.2e-10 1.4e-07 31.6 0.4 2 25 548 571 548 571 0.97 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF778-207 - 729 1.3e-109 354.1 123.9 14 19 2.9e-13 3.4e-10 39.9 0.6 1 26 575 600 575 600 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF778-207 - 729 1.3e-109 354.1 123.9 15 19 4.8e-10 5.7e-07 29.7 0.4 2 26 604 628 603 628 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF778-207 - 729 1.3e-109 354.1 123.9 16 19 1.7e-08 2.1e-05 24.8 1.2 1 24 631 654 631 655 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF778-207 - 729 1.3e-109 354.1 123.9 17 19 4.3e-08 5.1e-05 23.5 4.3 4 25 662 683 658 684 0.87 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF778-207 - 729 1.3e-109 354.1 123.9 18 19 0.0002 0.24 11.9 0.6 2 26 688 712 688 712 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF778-207 - 729 1.3e-109 354.1 123.9 19 19 0.073 87 3.8 0.5 2 15 716 729 716 729 0.93 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZNF778-207 - 729 2.7e-90 292.1 134.6 1 20 0.0035 4.1 8.0 0.2 3 22 117 138 116 138 0.90 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF778-207 - 729 2.7e-90 292.1 134.6 2 20 0.4 4.8e+02 1.5 0.0 5 15 174 184 173 187 0.80 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF778-207 - 729 2.7e-90 292.1 134.6 3 20 3.1 3.7e+03 -1.3 0.0 6 17 202 213 200 214 0.87 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF778-207 - 729 2.7e-90 292.1 134.6 4 20 0.002 2.4 8.8 0.2 1 16 253 268 253 269 0.87 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF778-207 - 729 2.7e-90 292.1 134.6 5 20 0.00013 0.15 12.6 0.0 3 23 281 303 280 303 0.94 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF778-207 - 729 2.7e-90 292.1 134.6 6 20 1.8e-05 0.021 15.3 0.3 2 22 310 330 309 330 0.92 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF778-207 - 729 2.7e-90 292.1 134.6 7 20 7.2e-05 0.086 13.3 0.5 1 23 337 359 337 359 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF778-207 - 729 2.7e-90 292.1 134.6 8 20 1.4e-06 0.0017 18.7 1.5 1 23 365 387 365 387 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF778-207 - 729 2.7e-90 292.1 134.6 9 20 1.3e-07 0.00016 22.0 2.9 1 23 393 415 393 415 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF778-207 - 729 2.7e-90 292.1 134.6 10 20 3.7e-09 4.5e-06 26.8 1.8 1 23 421 443 421 443 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF778-207 - 729 2.7e-90 292.1 134.6 11 20 5.5e-09 6.6e-06 26.3 0.3 1 23 449 471 449 471 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF778-207 - 729 2.7e-90 292.1 134.6 12 20 1.9e-09 2.3e-06 27.8 0.8 1 23 477 499 477 499 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF778-207 - 729 2.7e-90 292.1 134.6 13 20 1.1e-07 0.00013 22.2 0.3 1 23 505 527 505 527 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF778-207 - 729 2.7e-90 292.1 134.6 14 20 3.4e-07 0.00041 20.6 3.1 1 23 533 555 533 555 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF778-207 - 729 2.7e-90 292.1 134.6 15 20 6.1e-10 7.3e-07 29.3 0.7 1 23 561 583 561 583 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF778-207 - 729 2.7e-90 292.1 134.6 16 20 1.3e-10 1.6e-07 31.4 1.0 1 23 589 611 589 611 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF778-207 - 729 2.7e-90 292.1 134.6 17 20 9e-09 1.1e-05 25.6 1.0 1 23 617 639 617 639 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF778-207 - 729 2.7e-90 292.1 134.6 18 20 9.6e-08 0.00011 22.4 2.0 1 23 645 667 645 667 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF778-207 - 729 2.7e-90 292.1 134.6 19 20 6.5e-07 0.00078 19.8 0.8 1 22 673 694 673 694 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF778-207 - 729 2.7e-90 292.1 134.6 20 20 6.1e-08 7.3e-05 23.0 5.0 1 23 701 723 701 723 0.98 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZNF778-207 - 729 4.3e-52 170.2 128.7 1 20 0.0021 2.5 9.2 0.2 4 22 120 138 117 140 0.90 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF778-207 - 729 4.3e-52 170.2 128.7 2 20 1.9 2.3e+03 -0.0 0.0 5 13 174 182 173 186 0.83 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF778-207 - 729 4.3e-52 170.2 128.7 3 20 1.9 2.2e+03 -0.0 0.0 5 17 201 213 200 219 0.81 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF778-207 - 729 4.3e-52 170.2 128.7 4 20 0.054 64 4.8 0.1 1 16 253 268 253 276 0.69 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF778-207 - 729 4.3e-52 170.2 128.7 5 20 0.049 58 4.9 0.1 3 23 281 303 279 304 0.88 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF778-207 - 729 4.3e-52 170.2 128.7 6 20 6e-05 0.072 14.0 0.2 2 22 310 330 309 332 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF778-207 - 729 4.3e-52 170.2 128.7 7 20 0.17 2.1e+02 3.2 0.8 1 19 337 355 337 360 0.81 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF778-207 - 729 4.3e-52 170.2 128.7 8 20 1.4e-05 0.017 15.9 1.5 1 23 365 387 365 388 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF778-207 - 729 4.3e-52 170.2 128.7 9 20 1.6e-06 0.0019 18.9 2.1 1 23 393 415 393 416 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF778-207 - 729 4.3e-52 170.2 128.7 10 20 2.6e-06 0.0031 18.2 1.5 1 23 421 443 421 444 0.97 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF778-207 - 729 4.3e-52 170.2 128.7 11 20 4.1e-05 0.049 14.5 0.3 1 23 449 471 449 472 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF778-207 - 729 4.3e-52 170.2 128.7 12 20 2e-07 0.00024 21.7 0.5 1 23 477 499 477 500 0.97 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF778-207 - 729 4.3e-52 170.2 128.7 13 20 1.3e-05 0.016 16.0 0.3 1 23 505 527 505 528 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF778-207 - 729 4.3e-52 170.2 128.7 14 20 1.1e-05 0.014 16.2 2.5 1 23 533 555 533 556 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF778-207 - 729 4.3e-52 170.2 128.7 15 20 3.1e-06 0.0037 18.0 0.5 1 23 561 583 561 584 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF778-207 - 729 4.3e-52 170.2 128.7 16 20 3.2e-07 0.00038 21.1 0.9 1 23 589 611 589 612 0.97 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF778-207 - 729 4.3e-52 170.2 128.7 17 20 2.4e-06 0.0028 18.3 0.9 1 23 617 639 617 640 0.97 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF778-207 - 729 4.3e-52 170.2 128.7 18 20 0.002 2.4 9.2 1.2 1 19 645 663 645 667 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF778-207 - 729 4.3e-52 170.2 128.7 19 20 0.00011 0.13 13.2 0.7 1 22 673 694 673 695 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF778-207 - 729 4.3e-52 170.2 128.7 20 20 9e-05 0.11 13.4 4.1 1 23 701 723 701 724 0.93 C2H2-type zinc finger KRAB PF01352.27 42 ZNF778-207 - 729 6.6e-27 92.9 0.6 1 1 9.8e-30 1.2e-26 92.1 0.6 2 42 42 82 41 82 0.98 KRAB box zf-C2H2_6 PF13912.6 27 ZNF778-207 - 729 2.3e-20 72.1 122.0 1 18 7.8 9.3e+03 -3.2 0.0 5 12 120 127 120 130 0.87 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF778-207 - 729 2.3e-20 72.1 122.0 2 18 0.78 9.3e+02 0.0 0.1 6 13 174 181 174 182 0.91 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF778-207 - 729 2.3e-20 72.1 122.0 3 18 0.0057 6.8 6.8 0.2 2 13 253 264 253 266 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF778-207 - 729 2.3e-20 72.1 122.0 4 18 0.0033 4 7.6 0.5 3 17 310 324 310 327 0.76 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF778-207 - 729 2.3e-20 72.1 122.0 5 18 0.19 2.3e+02 1.9 2.2 2 24 337 359 337 362 0.86 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF778-207 - 729 2.3e-20 72.1 122.0 6 18 0.78 9.4e+02 -0.0 0.6 2 12 365 375 365 376 0.86 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF778-207 - 729 2.3e-20 72.1 122.0 7 18 0.0063 7.6 6.7 1.2 2 12 393 403 393 416 0.85 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF778-207 - 729 2.3e-20 72.1 122.0 8 18 0.0074 8.8 6.5 2.0 2 24 421 443 421 446 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF778-207 - 729 2.3e-20 72.1 122.0 9 18 0.00091 1.1 9.4 0.5 2 20 449 467 449 473 0.85 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF778-207 - 729 2.3e-20 72.1 122.0 10 18 7.1e-06 0.0085 16.1 1.4 2 24 477 499 477 502 0.95 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF778-207 - 729 2.3e-20 72.1 122.0 11 18 6.4e-05 0.077 13.0 0.4 2 25 505 528 505 530 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF778-207 - 729 2.3e-20 72.1 122.0 12 18 0.01 13 6.0 2.1 2 12 533 543 533 551 0.91 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF778-207 - 729 2.3e-20 72.1 122.0 13 18 0.00019 0.22 11.5 0.5 2 24 561 583 561 586 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF778-207 - 729 2.3e-20 72.1 122.0 14 18 7.1e-05 0.084 12.9 0.6 2 24 589 611 589 614 0.85 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF778-207 - 729 2.3e-20 72.1 122.0 15 18 3.5e-07 0.00042 20.3 1.1 2 24 617 639 617 642 0.95 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF778-207 - 729 2.3e-20 72.1 122.0 16 18 0.0023 2.7 8.1 0.1 2 12 645 655 645 656 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF778-207 - 729 2.3e-20 72.1 122.0 17 18 5.9e-06 0.0071 16.3 1.5 2 24 673 695 673 698 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF778-207 - 729 2.3e-20 72.1 122.0 18 18 0.006 7.2 6.7 1.1 1 12 700 711 700 713 0.93 C2H2-type zinc finger zf-C2H2_jaz PF12171.8 27 ZNF778-207 - 729 1.6e-14 53.7 75.5 1 16 5.6 6.7e+03 -2.4 0.1 2 11 253 262 252 263 0.83 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF778-207 - 729 1.6e-14 53.7 75.5 2 16 0.21 2.5e+02 2.1 0.0 4 21 311 328 310 332 0.79 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF778-207 - 729 1.6e-14 53.7 75.5 3 16 3.2 3.8e+03 -1.6 0.5 2 10 337 345 336 348 0.83 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF778-207 - 729 1.6e-14 53.7 75.5 4 16 6.1e-05 0.073 13.4 0.3 2 22 365 385 364 385 0.91 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF778-207 - 729 1.6e-14 53.7 75.5 5 16 0.78 9.3e+02 0.3 0.3 2 11 393 402 392 403 0.87 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF778-207 - 729 1.6e-14 53.7 75.5 6 16 0.039 47 4.4 0.2 2 24 421 443 420 443 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF778-207 - 729 1.6e-14 53.7 75.5 7 16 0.072 86 3.6 0.1 2 20 449 467 448 467 0.84 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF778-207 - 729 1.6e-14 53.7 75.5 8 16 0.0023 2.8 8.3 0.0 2 24 477 499 476 499 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF778-207 - 729 1.6e-14 53.7 75.5 9 16 0.003 3.6 8.0 0.3 2 24 505 527 504 527 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF778-207 - 729 1.6e-14 53.7 75.5 10 16 0.00041 0.49 10.7 0.8 2 21 533 552 532 553 0.91 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF778-207 - 729 1.6e-14 53.7 75.5 11 16 0.00059 0.7 10.3 0.1 2 24 561 583 560 583 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF778-207 - 729 1.6e-14 53.7 75.5 12 16 6.8e-05 0.081 13.2 0.1 2 24 589 611 588 611 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF778-207 - 729 1.6e-14 53.7 75.5 13 16 9.9e-05 0.12 12.7 0.2 2 24 617 639 616 639 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF778-207 - 729 1.6e-14 53.7 75.5 14 16 0.45 5.4e+02 1.1 0.4 2 20 645 663 644 663 0.82 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF778-207 - 729 1.6e-14 53.7 75.5 15 16 0.0064 7.7 6.9 0.4 2 23 673 694 672 694 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF778-207 - 729 1.6e-14 53.7 75.5 16 16 0.034 40 4.6 1.9 2 14 701 713 700 719 0.90 Zinc-finger double-stranded RNA-binding Zn-ribbon_8 PF09723.10 40 ZNF778-207 - 729 3.4e-09 36.7 87.9 1 17 5.8 6.9e+03 -2.7 0.0 9 18 120 129 118 136 0.77 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF778-207 - 729 3.4e-09 36.7 87.9 2 17 0.13 1.5e+02 2.6 0.3 28 35 253 261 239 266 0.60 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF778-207 - 729 3.4e-09 36.7 87.9 3 17 0.2 2.4e+02 1.9 1.3 8 16 255 263 245 292 0.70 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF778-207 - 729 3.4e-09 36.7 87.9 4 17 0.043 51 4.1 1.5 19 35 300 317 284 321 0.69 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF778-207 - 729 3.4e-09 36.7 87.9 5 17 0.034 40 4.4 7.1 7 34 310 344 309 346 0.71 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF778-207 - 729 3.4e-09 36.7 87.9 6 17 0.99 1.2e+03 -0.3 5.3 6 15 337 346 336 375 0.63 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF778-207 - 729 3.4e-09 36.7 87.9 7 17 1.8 2.1e+03 -1.1 0.1 6 15 365 374 364 381 0.84 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF778-207 - 729 3.4e-09 36.7 87.9 8 17 0.006 7.2 6.8 4.7 6 34 393 428 390 432 0.81 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF778-207 - 729 3.4e-09 36.7 87.9 9 17 1e-05 0.012 15.7 3.6 6 34 449 484 448 487 0.77 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF778-207 - 729 3.4e-09 36.7 87.9 10 17 3.3e-06 0.0039 17.3 2.4 6 39 477 517 475 518 0.85 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF778-207 - 729 3.4e-09 36.7 87.9 11 17 0.0036 4.3 7.5 2.0 6 34 505 540 504 544 0.79 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF778-207 - 729 3.4e-09 36.7 87.9 12 17 3.2e-05 0.038 14.1 2.9 6 34 561 596 560 599 0.75 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF778-207 - 729 3.4e-09 36.7 87.9 13 17 3.7e-05 0.045 13.9 1.1 6 34 589 624 588 628 0.83 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF778-207 - 729 3.4e-09 36.7 87.9 14 17 0.0002 0.24 11.6 2.0 6 36 617 654 615 657 0.85 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF778-207 - 729 3.4e-09 36.7 87.9 15 17 0.0002 0.24 11.6 2.8 6 38 645 684 644 686 0.81 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF778-207 - 729 3.4e-09 36.7 87.9 16 17 0.0075 8.9 6.5 5.2 6 34 673 708 671 712 0.76 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF778-207 - 729 3.4e-09 36.7 87.9 17 17 0.025 30 4.9 0.6 6 16 701 711 700 725 0.87 Zinc ribbon domain zf-trcl PF13451.6 48 ZNF778-207 - 729 1.8e-07 30.9 74.1 1 14 0.0062 7.4 6.5 0.1 5 18 253 266 251 267 0.89 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF778-207 - 729 1.8e-07 30.9 74.1 2 14 0.04 47 4.0 0.5 3 15 307 319 305 323 0.87 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF778-207 - 729 1.8e-07 30.9 74.1 3 14 0.16 1.9e+02 2.1 1.5 3 12 335 344 333 346 0.85 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF778-207 - 729 1.8e-07 30.9 74.1 4 14 0.38 4.5e+02 0.8 0.1 2 14 362 374 361 375 0.87 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF778-207 - 729 1.8e-07 30.9 74.1 5 14 0.1 1.2e+02 2.7 0.1 3 15 391 403 391 405 0.90 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF778-207 - 729 1.8e-07 30.9 74.1 6 14 0.0018 2.2 8.3 0.6 3 15 419 431 417 435 0.87 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF778-207 - 729 1.8e-07 30.9 74.1 7 14 0.002 2.4 8.1 0.1 3 15 447 459 445 464 0.87 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF778-207 - 729 1.8e-07 30.9 74.1 8 14 0.016 19 5.2 0.1 3 15 475 487 473 491 0.89 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF778-207 - 729 1.8e-07 30.9 74.1 9 14 0.26 3.1e+02 1.4 3.9 3 13 503 513 501 546 0.57 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF778-207 - 729 1.8e-07 30.9 74.1 10 14 0.0031 3.7 7.5 0.1 3 15 559 571 559 578 0.87 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF778-207 - 729 1.8e-07 30.9 74.1 11 14 0.045 54 3.8 0.1 3 15 587 599 585 602 0.88 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF778-207 - 729 1.8e-07 30.9 74.1 12 14 0.011 14 5.7 0.1 3 14 615 626 613 630 0.89 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF778-207 - 729 1.8e-07 30.9 74.1 13 14 0.091 1.1e+02 2.8 3.5 3 41 643 680 641 684 0.58 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF778-207 - 729 1.8e-07 30.9 74.1 14 14 0.0031 3.7 7.5 0.4 3 14 699 710 697 713 0.88 Probable zinc-ribbon domain XPA_N PF01286.18 32 ZNF778-207 - 729 8.2e-07 29.0 78.7 1 18 8.5 1e+04 -3.3 0.1 6 12 174 180 174 181 0.83 XPA protein N-terminal XPA_N PF01286.18 32 ZNF778-207 - 729 8.2e-07 29.0 78.7 2 18 7.8 9.3e+03 -3.2 0.1 7 16 202 212 201 213 0.63 XPA protein N-terminal XPA_N PF01286.18 32 ZNF778-207 - 729 8.2e-07 29.0 78.7 3 18 0.0072 8.6 6.5 0.0 3 14 254 265 252 269 0.77 XPA protein N-terminal XPA_N PF01286.18 32 ZNF778-207 - 729 8.2e-07 29.0 78.7 4 18 0.015 18 5.5 0.8 3 12 310 319 308 325 0.91 XPA protein N-terminal XPA_N PF01286.18 32 ZNF778-207 - 729 8.2e-07 29.0 78.7 5 18 0.083 1e+02 3.1 0.3 3 18 338 353 336 356 0.85 XPA protein N-terminal XPA_N PF01286.18 32 ZNF778-207 - 729 8.2e-07 29.0 78.7 6 18 0.6 7.1e+02 0.4 0.4 4 15 367 378 365 383 0.80 XPA protein N-terminal XPA_N PF01286.18 32 ZNF778-207 - 729 8.2e-07 29.0 78.7 7 18 0.42 5.1e+02 0.8 0.0 3 12 394 403 392 404 0.88 XPA protein N-terminal XPA_N PF01286.18 32 ZNF778-207 - 729 8.2e-07 29.0 78.7 8 18 0.0028 3.3 7.8 0.6 3 14 422 433 420 436 0.93 XPA protein N-terminal XPA_N PF01286.18 32 ZNF778-207 - 729 8.2e-07 29.0 78.7 9 18 0.01 13 6.0 0.2 3 14 450 461 448 465 0.90 XPA protein N-terminal XPA_N PF01286.18 32 ZNF778-207 - 729 8.2e-07 29.0 78.7 10 18 0.044 52 4.0 0.1 3 12 478 487 476 490 0.90 XPA protein N-terminal XPA_N PF01286.18 32 ZNF778-207 - 729 8.2e-07 29.0 78.7 11 18 0.036 43 4.3 0.1 3 18 506 521 504 523 0.88 XPA protein N-terminal XPA_N PF01286.18 32 ZNF778-207 - 729 8.2e-07 29.0 78.7 12 18 1 1.2e+03 -0.4 0.6 4 14 535 545 532 550 0.75 XPA protein N-terminal XPA_N PF01286.18 32 ZNF778-207 - 729 8.2e-07 29.0 78.7 13 18 0.0065 7.7 6.7 0.1 3 14 562 573 560 577 0.90 XPA protein N-terminal XPA_N PF01286.18 32 ZNF778-207 - 729 8.2e-07 29.0 78.7 14 18 0.028 34 4.6 0.1 3 14 590 601 588 604 0.90 XPA protein N-terminal XPA_N PF01286.18 32 ZNF778-207 - 729 8.2e-07 29.0 78.7 15 18 0.0015 1.8 8.7 0.1 3 14 618 629 616 634 0.90 XPA protein N-terminal XPA_N PF01286.18 32 ZNF778-207 - 729 8.2e-07 29.0 78.7 16 18 0.0088 10 6.2 0.1 3 14 646 657 644 662 0.87 XPA protein N-terminal XPA_N PF01286.18 32 ZNF778-207 - 729 8.2e-07 29.0 78.7 17 18 0.019 23 5.1 0.2 3 18 674 689 672 691 0.85 XPA protein N-terminal XPA_N PF01286.18 32 ZNF778-207 - 729 8.2e-07 29.0 78.7 18 18 0.013 16 5.6 1.6 3 14 702 713 701 719 0.85 XPA protein N-terminal # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF778-207.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF778-207.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF778-207.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF778-207.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF778-207.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:14:14 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZNF780A-201 - 641 1.4e-133 429.9 123.0 1 18 0.00018 0.13 12.7 2.2 13 25 163 175 150 176 0.87 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF780A-201 - 641 1.4e-133 429.9 123.0 2 18 1.5e-10 1.1e-07 32.0 0.2 1 24 179 202 179 203 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF780A-201 - 641 1.4e-133 429.9 123.0 3 18 5.7e-11 4.1e-08 33.3 1.8 2 25 208 231 207 231 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF780A-201 - 641 1.4e-133 429.9 123.0 4 18 3.9e-10 2.8e-07 30.7 1.0 2 25 236 259 236 260 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF780A-201 - 641 1.4e-133 429.9 123.0 5 18 1.3e-09 9.5e-07 29.0 0.1 1 25 263 287 263 288 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF780A-201 - 641 1.4e-133 429.9 123.0 6 18 1.7e-07 0.00012 22.3 1.0 1 25 291 315 291 316 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF780A-201 - 641 1.4e-133 429.9 123.0 7 18 5e-10 3.6e-07 30.3 1.4 3 25 321 343 319 343 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF780A-201 - 641 1.4e-133 429.9 123.0 8 18 1e-11 7.4e-09 35.7 0.8 2 25 348 371 347 371 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF780A-201 - 641 1.4e-133 429.9 123.0 9 18 1.8e-11 1.3e-08 34.9 1.1 2 25 376 399 375 400 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF780A-201 - 641 1.4e-133 429.9 123.0 10 18 2.1e-08 1.5e-05 25.2 0.1 1 25 403 427 403 428 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF780A-201 - 641 1.4e-133 429.9 123.0 11 18 1.2e-06 0.00084 19.7 1.0 1 25 431 455 431 456 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF780A-201 - 641 1.4e-133 429.9 123.0 12 18 7.7e-10 5.5e-07 29.7 0.1 3 25 461 483 459 484 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF780A-201 - 641 1.4e-133 429.9 123.0 13 18 4.5e-11 3.2e-08 33.6 0.3 1 24 487 510 487 511 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF780A-201 - 641 1.4e-133 429.9 123.0 14 18 8.1e-11 5.8e-08 32.8 2.2 2 25 516 539 515 540 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF780A-201 - 641 1.4e-133 429.9 123.0 15 18 6.3e-11 4.5e-08 33.2 0.9 1 24 543 566 543 567 0.97 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF780A-201 - 641 1.4e-133 429.9 123.0 16 18 4.2e-11 3e-08 33.7 2.3 1 24 571 594 571 595 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF780A-201 - 641 1.4e-133 429.9 123.0 17 18 3.8e-11 2.7e-08 33.9 0.7 2 25 600 623 599 623 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF780A-201 - 641 1.4e-133 429.9 123.0 18 18 0.011 7.6 7.2 0.1 2 13 628 639 627 640 0.94 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZNF780A-201 - 641 2.1e-79 257.8 122.9 1 17 4.2e-08 3e-05 24.2 0.4 1 23 165 187 165 187 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF780A-201 - 641 2.1e-79 257.8 122.9 2 17 5.9e-05 0.043 14.3 3.1 1 23 193 215 193 215 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF780A-201 - 641 2.1e-79 257.8 122.9 3 17 2.7e-06 0.0019 18.5 0.3 1 23 221 243 221 243 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF780A-201 - 641 2.1e-79 257.8 122.9 4 17 1.2e-09 8.8e-07 29.1 0.6 1 23 249 271 249 271 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF780A-201 - 641 2.1e-79 257.8 122.9 5 17 4.2e-07 0.0003 21.1 0.4 1 23 277 299 277 299 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF780A-201 - 641 2.1e-79 257.8 122.9 6 17 8.6e-05 0.062 13.8 2.5 1 23 305 327 305 327 0.91 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF780A-201 - 641 2.1e-79 257.8 122.9 7 17 1.1e-06 0.00076 19.8 0.4 1 23 333 355 333 355 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF780A-201 - 641 2.1e-79 257.8 122.9 8 17 6.1e-06 0.0044 17.4 0.4 1 23 361 383 361 383 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF780A-201 - 641 2.1e-79 257.8 122.9 9 17 1.2e-09 8.8e-07 29.1 0.6 1 23 389 411 389 411 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF780A-201 - 641 2.1e-79 257.8 122.9 10 17 4.2e-07 0.0003 21.1 0.4 1 23 417 439 417 439 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF780A-201 - 641 2.1e-79 257.8 122.9 11 17 0.0011 0.81 10.3 3.1 1 23 445 467 445 467 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF780A-201 - 641 2.1e-79 257.8 122.9 12 17 1.1e-07 7.9e-05 22.9 0.1 1 23 473 495 473 495 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF780A-201 - 641 2.1e-79 257.8 122.9 13 17 1e-05 0.0072 16.7 0.9 1 23 501 523 501 523 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF780A-201 - 641 2.1e-79 257.8 122.9 14 17 2.8e-07 0.0002 21.6 1.1 1 23 529 551 529 551 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF780A-201 - 641 2.1e-79 257.8 122.9 15 17 6.1e-06 0.0043 17.4 3.5 1 23 557 579 557 579 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF780A-201 - 641 2.1e-79 257.8 122.9 16 17 3.6e-06 0.0025 18.1 1.6 1 23 585 607 585 607 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF780A-201 - 641 2.1e-79 257.8 122.9 17 17 2.8e-07 0.0002 21.6 0.4 1 23 613 635 613 635 0.97 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZNF780A-201 - 641 3.8e-46 151.7 123.0 1 17 3.4e-05 0.024 15.4 0.4 1 23 165 187 165 188 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF780A-201 - 641 3.8e-46 151.7 123.0 2 17 0.0035 2.5 9.2 2.8 1 23 193 215 193 216 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF780A-201 - 641 3.8e-46 151.7 123.0 3 17 0.00022 0.16 12.9 0.3 1 23 221 243 221 244 0.88 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF780A-201 - 641 3.8e-46 151.7 123.0 4 17 1.3e-05 0.009 16.8 0.7 1 23 249 271 249 272 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF780A-201 - 641 3.8e-46 151.7 123.0 5 17 4.4e-05 0.032 15.1 0.4 1 23 277 299 277 300 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF780A-201 - 641 3.8e-46 151.7 123.0 6 17 0.0028 2 9.5 2.7 1 23 305 327 305 328 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF780A-201 - 641 3.8e-46 151.7 123.0 7 17 5.4e-05 0.039 14.8 0.5 1 23 333 355 333 356 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF780A-201 - 641 3.8e-46 151.7 123.0 8 17 3.7e-05 0.027 15.3 0.4 1 23 361 383 361 384 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF780A-201 - 641 3.8e-46 151.7 123.0 9 17 1.3e-05 0.0092 16.8 0.5 1 23 389 411 389 412 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF780A-201 - 641 3.8e-46 151.7 123.0 10 17 4.4e-05 0.032 15.1 0.4 1 23 417 439 417 440 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF780A-201 - 641 3.8e-46 151.7 123.0 11 17 0.024 17 6.5 3.0 1 23 445 467 445 468 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF780A-201 - 641 3.8e-46 151.7 123.0 12 17 0.00031 0.22 12.5 0.2 1 23 473 495 473 496 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF780A-201 - 641 3.8e-46 151.7 123.0 13 17 1.8e-05 0.013 16.3 0.9 1 23 501 523 501 524 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF780A-201 - 641 3.8e-46 151.7 123.0 14 17 0.00046 0.33 11.9 0.8 1 23 529 551 529 552 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF780A-201 - 641 3.8e-46 151.7 123.0 15 17 0.00035 0.25 12.3 3.1 1 23 557 579 557 580 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF780A-201 - 641 3.8e-46 151.7 123.0 16 17 0.00011 0.077 13.9 1.6 1 23 585 607 585 608 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF780A-201 - 641 3.8e-46 151.7 123.0 17 17 6.6e-06 0.0047 17.6 0.4 1 23 613 635 613 636 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF780A-201 - 641 4e-33 112.8 128.8 1 17 0.00032 0.23 11.5 0.8 2 21 165 184 165 189 0.88 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF780A-201 - 641 4e-33 112.8 128.8 2 17 0.0019 1.4 9.0 1.1 2 12 193 203 193 203 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF780A-201 - 641 4e-33 112.8 128.8 3 17 0.00012 0.088 12.8 0.4 2 21 221 240 221 244 0.90 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF780A-201 - 641 4e-33 112.8 128.8 4 17 3.2e-05 0.023 14.7 0.9 2 20 249 267 248 272 0.81 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF780A-201 - 641 4e-33 112.8 128.8 5 17 3.2e-05 0.023 14.7 1.3 2 24 277 299 277 302 0.90 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF780A-201 - 641 4e-33 112.8 128.8 6 17 0.008 5.8 7.0 2.4 2 20 305 323 305 325 0.96 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF780A-201 - 641 4e-33 112.8 128.8 7 17 0.00046 0.33 11.0 0.5 2 21 333 352 333 357 0.80 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF780A-201 - 641 4e-33 112.8 128.8 8 17 0.0002 0.14 12.1 0.5 2 21 361 380 361 384 0.92 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF780A-201 - 641 4e-33 112.8 128.8 9 17 6e-05 0.043 13.8 1.0 2 20 389 407 389 411 0.81 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF780A-201 - 641 4e-33 112.8 128.8 10 17 3.2e-05 0.023 14.7 1.3 2 24 417 439 417 442 0.90 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF780A-201 - 641 4e-33 112.8 128.8 11 17 0.77 5.5e+02 0.7 1.6 2 24 445 467 445 468 0.87 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF780A-201 - 641 4e-33 112.8 128.8 12 17 0.0006 0.43 10.6 0.4 2 21 473 492 473 497 0.89 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF780A-201 - 641 4e-33 112.8 128.8 13 17 0.00013 0.093 12.8 2.1 2 24 501 523 501 526 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF780A-201 - 641 4e-33 112.8 128.8 14 17 3e-06 0.0021 18.0 1.3 2 24 529 551 529 554 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF780A-201 - 641 4e-33 112.8 128.8 15 17 0.016 12 6.1 4.6 2 12 557 567 557 577 0.85 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF780A-201 - 641 4e-33 112.8 128.8 16 17 0.00089 0.64 10.1 0.2 2 12 585 595 585 605 0.95 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF780A-201 - 641 4e-33 112.8 128.8 17 17 8.3e-05 0.06 13.4 0.4 2 21 613 632 613 635 0.80 C2H2-type zinc finger KRAB PF01352.27 42 ZNF780A-201 - 641 3.3e-26 90.6 0.1 1 1 7.7e-29 5.5e-26 89.9 0.1 1 42 5 46 5 46 0.99 KRAB box zf-C2H2_jaz PF12171.8 27 ZNF780A-201 - 641 5.1e-25 87.2 76.2 1 16 2.7e-05 0.019 15.2 0.2 2 21 165 184 164 185 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF780A-201 - 641 5.1e-25 87.2 76.2 2 16 0.0039 2.8 8.3 0.5 2 22 193 213 192 213 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF780A-201 - 641 5.1e-25 87.2 76.2 3 16 0.42 3e+02 1.9 0.1 2 12 221 231 220 241 0.85 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF780A-201 - 641 5.1e-25 87.2 76.2 4 16 1.5e-05 0.011 16.0 0.3 2 21 249 268 248 269 0.95 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF780A-201 - 641 5.1e-25 87.2 76.2 5 16 0.0012 0.86 10.0 0.1 2 22 277 297 276 297 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF780A-201 - 641 5.1e-25 87.2 76.2 6 16 0.84 6e+02 0.9 1.9 2 21 305 324 304 325 0.89 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF780A-201 - 641 5.1e-25 87.2 76.2 7 16 0.099 71 3.9 0.1 2 11 333 342 332 353 0.88 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF780A-201 - 641 5.1e-25 87.2 76.2 8 16 0.051 37 4.8 0.1 2 22 361 381 360 381 0.91 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF780A-201 - 641 5.1e-25 87.2 76.2 9 16 8.8e-06 0.0063 16.8 0.2 2 21 389 408 388 409 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF780A-201 - 641 5.1e-25 87.2 76.2 10 16 0.0012 0.86 10.0 0.1 2 22 417 437 416 437 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF780A-201 - 641 5.1e-25 87.2 76.2 11 16 0.00094 0.68 10.3 0.0 2 21 473 492 472 493 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF780A-201 - 641 5.1e-25 87.2 76.2 12 16 0.079 57 4.2 0.6 2 23 501 522 500 523 0.79 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF780A-201 - 641 5.1e-25 87.2 76.2 13 16 0.0013 0.91 9.9 0.1 2 21 529 548 528 549 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF780A-201 - 641 5.1e-25 87.2 76.2 14 16 0.039 28 5.2 0.5 2 21 557 576 556 577 0.80 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF780A-201 - 641 5.1e-25 87.2 76.2 15 16 0.0049 3.5 8.0 0.2 2 22 585 605 584 605 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF780A-201 - 641 5.1e-25 87.2 76.2 16 16 0.0017 1.2 9.5 0.1 2 22 613 633 612 633 0.92 Zinc-finger double-stranded RNA-binding Zn-ribbon_8 PF09723.10 40 ZNF780A-201 - 641 1.5e-19 69.8 90.3 1 14 2.6e-05 0.018 15.1 4.0 6 36 165 202 164 206 0.90 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF780A-201 - 641 1.5e-19 69.8 90.3 2 14 0.047 34 4.7 11.1 6 34 193 228 192 261 0.77 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF780A-201 - 641 1.5e-19 69.8 90.3 3 14 0.011 8 6.7 0.6 6 17 249 260 248 272 0.81 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF780A-201 - 641 1.5e-19 69.8 90.3 4 14 9.7e-06 0.0069 16.5 1.8 6 34 277 312 276 316 0.88 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF780A-201 - 641 1.5e-19 69.8 90.3 5 14 8.1e-05 0.058 13.5 3.1 6 34 333 368 332 371 0.90 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF780A-201 - 641 1.5e-19 69.8 90.3 6 14 0.0016 1.2 9.4 5.1 6 36 361 398 360 400 0.71 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF780A-201 - 641 1.5e-19 69.8 90.3 7 14 0.011 7.7 6.7 0.6 6 17 389 400 388 412 0.81 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF780A-201 - 641 1.5e-19 69.8 90.3 8 14 0.00041 0.29 11.3 3.9 6 33 417 451 414 459 0.88 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF780A-201 - 641 1.5e-19 69.8 90.3 9 14 7.5e-06 0.0054 16.8 3.2 6 36 473 510 472 513 0.91 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF780A-201 - 641 1.5e-19 69.8 90.3 10 14 0.00061 0.44 10.7 6.1 6 37 501 539 500 542 0.87 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF780A-201 - 641 1.5e-19 69.8 90.3 11 14 0.0038 2.7 8.2 5.1 6 36 529 566 527 570 0.87 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF780A-201 - 641 1.5e-19 69.8 90.3 12 14 0.00025 0.18 11.9 3.9 6 36 557 594 555 598 0.88 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF780A-201 - 641 1.5e-19 69.8 90.3 13 14 0.0017 1.2 9.3 5.4 6 34 585 620 584 623 0.86 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF780A-201 - 641 1.5e-19 69.8 90.3 14 14 0.01 7.4 6.8 0.4 6 16 613 623 612 634 0.84 Zinc ribbon domain zf_UBZ PF18439.1 32 ZNF780A-201 - 641 1.1e-09 37.7 79.1 1 17 0.0021 1.5 8.5 0.2 3 21 165 184 163 184 0.86 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF780A-201 - 641 1.1e-09 37.7 79.1 2 17 0.005 3.6 7.3 0.5 3 24 193 215 191 216 0.89 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF780A-201 - 641 1.1e-09 37.7 79.1 3 17 0.069 49 3.6 0.0 3 14 221 232 219 239 0.84 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF780A-201 - 641 1.1e-09 37.7 79.1 4 17 0.0066 4.7 6.9 0.1 3 20 249 267 247 268 0.81 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF780A-201 - 641 1.1e-09 37.7 79.1 5 17 0.058 42 3.9 0.1 3 12 277 286 275 296 0.81 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF780A-201 - 641 1.1e-09 37.7 79.1 6 17 0.025 18 5.0 0.9 3 20 305 323 303 324 0.90 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF780A-201 - 641 1.1e-09 37.7 79.1 7 17 0.055 39 3.9 0.1 3 13 333 343 331 352 0.82 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF780A-201 - 641 1.1e-09 37.7 79.1 8 17 0.046 33 4.2 0.1 3 18 361 377 359 380 0.78 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF780A-201 - 641 1.1e-09 37.7 79.1 9 17 0.0077 5.5 6.7 0.2 3 20 389 407 387 408 0.81 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF780A-201 - 641 1.1e-09 37.7 79.1 10 17 0.058 42 3.9 0.1 3 12 417 426 415 436 0.81 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF780A-201 - 641 1.1e-09 37.7 79.1 11 17 0.43 3.1e+02 1.1 1.8 3 21 445 464 443 464 0.91 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF780A-201 - 641 1.1e-09 37.7 79.1 12 17 0.036 26 4.5 0.1 3 14 473 484 471 492 0.75 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF780A-201 - 641 1.1e-09 37.7 79.1 13 17 0.012 8.3 6.1 0.1 3 21 501 520 499 520 0.84 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF780A-201 - 641 1.1e-09 37.7 79.1 14 17 0.059 42 3.8 0.1 3 13 529 539 527 548 0.78 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF780A-201 - 641 1.1e-09 37.7 79.1 15 17 0.042 30 4.3 0.2 3 15 557 569 555 576 0.81 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF780A-201 - 641 1.1e-09 37.7 79.1 16 17 0.02 14 5.4 0.3 3 20 585 603 583 604 0.79 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF780A-201 - 641 1.1e-09 37.7 79.1 17 17 0.0034 2.4 7.8 0.1 3 20 613 631 611 632 0.85 Ubiquitin-Binding Zinc Finger zinc_ribbon_15 PF17032.5 86 ZNF780A-201 - 641 2e-07 31.7 67.2 1 11 0.0066 4.7 8.0 2.7 33 81 161 208 155 211 0.82 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF780A-201 - 641 2e-07 31.7 67.2 2 11 0.0025 1.8 9.4 1.0 21 78 204 261 201 264 0.84 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF780A-201 - 641 2e-07 31.7 67.2 3 11 0.0025 1.8 9.4 4.6 31 75 242 286 222 292 0.88 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF780A-201 - 641 2e-07 31.7 67.2 4 11 0.005 3.6 8.4 2.4 26 74 293 341 289 348 0.89 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF780A-201 - 641 2e-07 31.7 67.2 5 11 0.012 8.5 7.2 4.8 24 74 319 369 305 376 0.79 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF780A-201 - 641 2e-07 31.7 67.2 6 11 0.0025 1.8 9.4 1.0 30 78 353 401 341 407 0.85 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF780A-201 - 641 2e-07 31.7 67.2 7 11 0.0014 0.99 10.2 1.4 34 75 385 426 380 435 0.87 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF780A-201 - 641 2e-07 31.7 67.2 8 11 0.075 54 4.6 2.3 38 75 417 454 404 459 0.86 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF780A-201 - 641 2e-07 31.7 67.2 9 11 0.00082 0.59 10.9 1.2 25 74 460 509 453 515 0.88 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF780A-201 - 641 2e-07 31.7 67.2 10 11 0.0079 5.7 7.8 1.2 32 75 523 566 512 571 0.85 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF780A-201 - 641 2e-07 31.7 67.2 11 11 0.00095 0.68 10.7 0.5 21 74 568 621 565 628 0.88 zinc-ribbon family # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF780A-201.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF780A-201.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF780A-201.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF780A-201.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF780A-201.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:14:15 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- KRAB PF01352.27 42 ZNF780A-202 - 158 4.6e-27 93.4 0.1 1 1 7.8e-31 7e-27 92.8 0.1 1 42 21 62 21 62 0.99 KRAB box # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF780A-202.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF780A-202.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF780A-202.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF780A-202.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF780A-202.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:14:15 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZNF780A-203 - 641 1.4e-133 429.9 123.0 1 18 0.00018 0.13 12.7 2.2 13 25 163 175 150 176 0.87 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF780A-203 - 641 1.4e-133 429.9 123.0 2 18 1.5e-10 1.1e-07 32.0 0.2 1 24 179 202 179 203 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF780A-203 - 641 1.4e-133 429.9 123.0 3 18 5.7e-11 4.1e-08 33.3 1.8 2 25 208 231 207 231 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF780A-203 - 641 1.4e-133 429.9 123.0 4 18 3.9e-10 2.8e-07 30.7 1.0 2 25 236 259 236 260 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF780A-203 - 641 1.4e-133 429.9 123.0 5 18 1.3e-09 9.5e-07 29.0 0.1 1 25 263 287 263 288 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF780A-203 - 641 1.4e-133 429.9 123.0 6 18 1.7e-07 0.00012 22.3 1.0 1 25 291 315 291 316 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF780A-203 - 641 1.4e-133 429.9 123.0 7 18 5e-10 3.6e-07 30.3 1.4 3 25 321 343 319 343 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF780A-203 - 641 1.4e-133 429.9 123.0 8 18 1e-11 7.4e-09 35.7 0.8 2 25 348 371 347 371 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF780A-203 - 641 1.4e-133 429.9 123.0 9 18 1.8e-11 1.3e-08 34.9 1.1 2 25 376 399 375 400 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF780A-203 - 641 1.4e-133 429.9 123.0 10 18 2.1e-08 1.5e-05 25.2 0.1 1 25 403 427 403 428 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF780A-203 - 641 1.4e-133 429.9 123.0 11 18 1.2e-06 0.00084 19.7 1.0 1 25 431 455 431 456 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF780A-203 - 641 1.4e-133 429.9 123.0 12 18 7.7e-10 5.5e-07 29.7 0.1 3 25 461 483 459 484 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF780A-203 - 641 1.4e-133 429.9 123.0 13 18 4.5e-11 3.2e-08 33.6 0.3 1 24 487 510 487 511 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF780A-203 - 641 1.4e-133 429.9 123.0 14 18 8.1e-11 5.8e-08 32.8 2.2 2 25 516 539 515 540 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF780A-203 - 641 1.4e-133 429.9 123.0 15 18 6.3e-11 4.5e-08 33.2 0.9 1 24 543 566 543 567 0.97 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF780A-203 - 641 1.4e-133 429.9 123.0 16 18 4.2e-11 3e-08 33.7 2.3 1 24 571 594 571 595 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF780A-203 - 641 1.4e-133 429.9 123.0 17 18 3.8e-11 2.7e-08 33.9 0.7 2 25 600 623 599 623 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF780A-203 - 641 1.4e-133 429.9 123.0 18 18 0.011 7.6 7.2 0.1 2 13 628 639 627 640 0.94 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZNF780A-203 - 641 2.1e-79 257.8 122.9 1 17 4.2e-08 3e-05 24.2 0.4 1 23 165 187 165 187 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF780A-203 - 641 2.1e-79 257.8 122.9 2 17 5.9e-05 0.043 14.3 3.1 1 23 193 215 193 215 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF780A-203 - 641 2.1e-79 257.8 122.9 3 17 2.7e-06 0.0019 18.5 0.3 1 23 221 243 221 243 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF780A-203 - 641 2.1e-79 257.8 122.9 4 17 1.2e-09 8.8e-07 29.1 0.6 1 23 249 271 249 271 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF780A-203 - 641 2.1e-79 257.8 122.9 5 17 4.2e-07 0.0003 21.1 0.4 1 23 277 299 277 299 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF780A-203 - 641 2.1e-79 257.8 122.9 6 17 8.6e-05 0.062 13.8 2.5 1 23 305 327 305 327 0.91 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF780A-203 - 641 2.1e-79 257.8 122.9 7 17 1.1e-06 0.00076 19.8 0.4 1 23 333 355 333 355 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF780A-203 - 641 2.1e-79 257.8 122.9 8 17 6.1e-06 0.0044 17.4 0.4 1 23 361 383 361 383 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF780A-203 - 641 2.1e-79 257.8 122.9 9 17 1.2e-09 8.8e-07 29.1 0.6 1 23 389 411 389 411 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF780A-203 - 641 2.1e-79 257.8 122.9 10 17 4.2e-07 0.0003 21.1 0.4 1 23 417 439 417 439 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF780A-203 - 641 2.1e-79 257.8 122.9 11 17 0.0011 0.81 10.3 3.1 1 23 445 467 445 467 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF780A-203 - 641 2.1e-79 257.8 122.9 12 17 1.1e-07 7.9e-05 22.9 0.1 1 23 473 495 473 495 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF780A-203 - 641 2.1e-79 257.8 122.9 13 17 1e-05 0.0072 16.7 0.9 1 23 501 523 501 523 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF780A-203 - 641 2.1e-79 257.8 122.9 14 17 2.8e-07 0.0002 21.6 1.1 1 23 529 551 529 551 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF780A-203 - 641 2.1e-79 257.8 122.9 15 17 6.1e-06 0.0043 17.4 3.5 1 23 557 579 557 579 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF780A-203 - 641 2.1e-79 257.8 122.9 16 17 3.6e-06 0.0025 18.1 1.6 1 23 585 607 585 607 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF780A-203 - 641 2.1e-79 257.8 122.9 17 17 2.8e-07 0.0002 21.6 0.4 1 23 613 635 613 635 0.97 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZNF780A-203 - 641 3.8e-46 151.7 123.0 1 17 3.4e-05 0.024 15.4 0.4 1 23 165 187 165 188 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF780A-203 - 641 3.8e-46 151.7 123.0 2 17 0.0035 2.5 9.2 2.8 1 23 193 215 193 216 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF780A-203 - 641 3.8e-46 151.7 123.0 3 17 0.00022 0.16 12.9 0.3 1 23 221 243 221 244 0.88 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF780A-203 - 641 3.8e-46 151.7 123.0 4 17 1.3e-05 0.009 16.8 0.7 1 23 249 271 249 272 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF780A-203 - 641 3.8e-46 151.7 123.0 5 17 4.4e-05 0.032 15.1 0.4 1 23 277 299 277 300 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF780A-203 - 641 3.8e-46 151.7 123.0 6 17 0.0028 2 9.5 2.7 1 23 305 327 305 328 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF780A-203 - 641 3.8e-46 151.7 123.0 7 17 5.4e-05 0.039 14.8 0.5 1 23 333 355 333 356 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF780A-203 - 641 3.8e-46 151.7 123.0 8 17 3.7e-05 0.027 15.3 0.4 1 23 361 383 361 384 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF780A-203 - 641 3.8e-46 151.7 123.0 9 17 1.3e-05 0.0092 16.8 0.5 1 23 389 411 389 412 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF780A-203 - 641 3.8e-46 151.7 123.0 10 17 4.4e-05 0.032 15.1 0.4 1 23 417 439 417 440 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF780A-203 - 641 3.8e-46 151.7 123.0 11 17 0.024 17 6.5 3.0 1 23 445 467 445 468 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF780A-203 - 641 3.8e-46 151.7 123.0 12 17 0.00031 0.22 12.5 0.2 1 23 473 495 473 496 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF780A-203 - 641 3.8e-46 151.7 123.0 13 17 1.8e-05 0.013 16.3 0.9 1 23 501 523 501 524 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF780A-203 - 641 3.8e-46 151.7 123.0 14 17 0.00046 0.33 11.9 0.8 1 23 529 551 529 552 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF780A-203 - 641 3.8e-46 151.7 123.0 15 17 0.00035 0.25 12.3 3.1 1 23 557 579 557 580 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF780A-203 - 641 3.8e-46 151.7 123.0 16 17 0.00011 0.077 13.9 1.6 1 23 585 607 585 608 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF780A-203 - 641 3.8e-46 151.7 123.0 17 17 6.6e-06 0.0047 17.6 0.4 1 23 613 635 613 636 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF780A-203 - 641 4e-33 112.8 128.8 1 17 0.00032 0.23 11.5 0.8 2 21 165 184 165 189 0.88 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF780A-203 - 641 4e-33 112.8 128.8 2 17 0.0019 1.4 9.0 1.1 2 12 193 203 193 203 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF780A-203 - 641 4e-33 112.8 128.8 3 17 0.00012 0.088 12.8 0.4 2 21 221 240 221 244 0.90 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF780A-203 - 641 4e-33 112.8 128.8 4 17 3.2e-05 0.023 14.7 0.9 2 20 249 267 248 272 0.81 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF780A-203 - 641 4e-33 112.8 128.8 5 17 3.2e-05 0.023 14.7 1.3 2 24 277 299 277 302 0.90 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF780A-203 - 641 4e-33 112.8 128.8 6 17 0.008 5.8 7.0 2.4 2 20 305 323 305 325 0.96 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF780A-203 - 641 4e-33 112.8 128.8 7 17 0.00046 0.33 11.0 0.5 2 21 333 352 333 357 0.80 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF780A-203 - 641 4e-33 112.8 128.8 8 17 0.0002 0.14 12.1 0.5 2 21 361 380 361 384 0.92 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF780A-203 - 641 4e-33 112.8 128.8 9 17 6e-05 0.043 13.8 1.0 2 20 389 407 389 411 0.81 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF780A-203 - 641 4e-33 112.8 128.8 10 17 3.2e-05 0.023 14.7 1.3 2 24 417 439 417 442 0.90 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF780A-203 - 641 4e-33 112.8 128.8 11 17 0.77 5.5e+02 0.7 1.6 2 24 445 467 445 468 0.87 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF780A-203 - 641 4e-33 112.8 128.8 12 17 0.0006 0.43 10.6 0.4 2 21 473 492 473 497 0.89 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF780A-203 - 641 4e-33 112.8 128.8 13 17 0.00013 0.093 12.8 2.1 2 24 501 523 501 526 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF780A-203 - 641 4e-33 112.8 128.8 14 17 3e-06 0.0021 18.0 1.3 2 24 529 551 529 554 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF780A-203 - 641 4e-33 112.8 128.8 15 17 0.016 12 6.1 4.6 2 12 557 567 557 577 0.85 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF780A-203 - 641 4e-33 112.8 128.8 16 17 0.00089 0.64 10.1 0.2 2 12 585 595 585 605 0.95 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF780A-203 - 641 4e-33 112.8 128.8 17 17 8.3e-05 0.06 13.4 0.4 2 21 613 632 613 635 0.80 C2H2-type zinc finger KRAB PF01352.27 42 ZNF780A-203 - 641 3.3e-26 90.6 0.1 1 1 7.7e-29 5.5e-26 89.9 0.1 1 42 5 46 5 46 0.99 KRAB box zf-C2H2_jaz PF12171.8 27 ZNF780A-203 - 641 5.1e-25 87.2 76.2 1 16 2.7e-05 0.019 15.2 0.2 2 21 165 184 164 185 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF780A-203 - 641 5.1e-25 87.2 76.2 2 16 0.0039 2.8 8.3 0.5 2 22 193 213 192 213 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF780A-203 - 641 5.1e-25 87.2 76.2 3 16 0.42 3e+02 1.9 0.1 2 12 221 231 220 241 0.85 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF780A-203 - 641 5.1e-25 87.2 76.2 4 16 1.5e-05 0.011 16.0 0.3 2 21 249 268 248 269 0.95 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF780A-203 - 641 5.1e-25 87.2 76.2 5 16 0.0012 0.86 10.0 0.1 2 22 277 297 276 297 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF780A-203 - 641 5.1e-25 87.2 76.2 6 16 0.84 6e+02 0.9 1.9 2 21 305 324 304 325 0.89 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF780A-203 - 641 5.1e-25 87.2 76.2 7 16 0.099 71 3.9 0.1 2 11 333 342 332 353 0.88 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF780A-203 - 641 5.1e-25 87.2 76.2 8 16 0.051 37 4.8 0.1 2 22 361 381 360 381 0.91 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF780A-203 - 641 5.1e-25 87.2 76.2 9 16 8.8e-06 0.0063 16.8 0.2 2 21 389 408 388 409 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF780A-203 - 641 5.1e-25 87.2 76.2 10 16 0.0012 0.86 10.0 0.1 2 22 417 437 416 437 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF780A-203 - 641 5.1e-25 87.2 76.2 11 16 0.00094 0.68 10.3 0.0 2 21 473 492 472 493 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF780A-203 - 641 5.1e-25 87.2 76.2 12 16 0.079 57 4.2 0.6 2 23 501 522 500 523 0.79 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF780A-203 - 641 5.1e-25 87.2 76.2 13 16 0.0013 0.91 9.9 0.1 2 21 529 548 528 549 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF780A-203 - 641 5.1e-25 87.2 76.2 14 16 0.039 28 5.2 0.5 2 21 557 576 556 577 0.80 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF780A-203 - 641 5.1e-25 87.2 76.2 15 16 0.0049 3.5 8.0 0.2 2 22 585 605 584 605 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF780A-203 - 641 5.1e-25 87.2 76.2 16 16 0.0017 1.2 9.5 0.1 2 22 613 633 612 633 0.92 Zinc-finger double-stranded RNA-binding Zn-ribbon_8 PF09723.10 40 ZNF780A-203 - 641 1.5e-19 69.8 90.3 1 14 2.6e-05 0.018 15.1 4.0 6 36 165 202 164 206 0.90 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF780A-203 - 641 1.5e-19 69.8 90.3 2 14 0.047 34 4.7 11.1 6 34 193 228 192 261 0.77 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF780A-203 - 641 1.5e-19 69.8 90.3 3 14 0.011 8 6.7 0.6 6 17 249 260 248 272 0.81 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF780A-203 - 641 1.5e-19 69.8 90.3 4 14 9.7e-06 0.0069 16.5 1.8 6 34 277 312 276 316 0.88 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF780A-203 - 641 1.5e-19 69.8 90.3 5 14 8.1e-05 0.058 13.5 3.1 6 34 333 368 332 371 0.90 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF780A-203 - 641 1.5e-19 69.8 90.3 6 14 0.0016 1.2 9.4 5.1 6 36 361 398 360 400 0.71 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF780A-203 - 641 1.5e-19 69.8 90.3 7 14 0.011 7.7 6.7 0.6 6 17 389 400 388 412 0.81 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF780A-203 - 641 1.5e-19 69.8 90.3 8 14 0.00041 0.29 11.3 3.9 6 33 417 451 414 459 0.88 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF780A-203 - 641 1.5e-19 69.8 90.3 9 14 7.5e-06 0.0054 16.8 3.2 6 36 473 510 472 513 0.91 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF780A-203 - 641 1.5e-19 69.8 90.3 10 14 0.00061 0.44 10.7 6.1 6 37 501 539 500 542 0.87 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF780A-203 - 641 1.5e-19 69.8 90.3 11 14 0.0038 2.7 8.2 5.1 6 36 529 566 527 570 0.87 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF780A-203 - 641 1.5e-19 69.8 90.3 12 14 0.00025 0.18 11.9 3.9 6 36 557 594 555 598 0.88 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF780A-203 - 641 1.5e-19 69.8 90.3 13 14 0.0017 1.2 9.3 5.4 6 34 585 620 584 623 0.86 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF780A-203 - 641 1.5e-19 69.8 90.3 14 14 0.01 7.4 6.8 0.4 6 16 613 623 612 634 0.84 Zinc ribbon domain zf_UBZ PF18439.1 32 ZNF780A-203 - 641 1.1e-09 37.7 79.1 1 17 0.0021 1.5 8.5 0.2 3 21 165 184 163 184 0.86 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF780A-203 - 641 1.1e-09 37.7 79.1 2 17 0.005 3.6 7.3 0.5 3 24 193 215 191 216 0.89 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF780A-203 - 641 1.1e-09 37.7 79.1 3 17 0.069 49 3.6 0.0 3 14 221 232 219 239 0.84 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF780A-203 - 641 1.1e-09 37.7 79.1 4 17 0.0066 4.7 6.9 0.1 3 20 249 267 247 268 0.81 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF780A-203 - 641 1.1e-09 37.7 79.1 5 17 0.058 42 3.9 0.1 3 12 277 286 275 296 0.81 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF780A-203 - 641 1.1e-09 37.7 79.1 6 17 0.025 18 5.0 0.9 3 20 305 323 303 324 0.90 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF780A-203 - 641 1.1e-09 37.7 79.1 7 17 0.055 39 3.9 0.1 3 13 333 343 331 352 0.82 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF780A-203 - 641 1.1e-09 37.7 79.1 8 17 0.046 33 4.2 0.1 3 18 361 377 359 380 0.78 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF780A-203 - 641 1.1e-09 37.7 79.1 9 17 0.0077 5.5 6.7 0.2 3 20 389 407 387 408 0.81 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF780A-203 - 641 1.1e-09 37.7 79.1 10 17 0.058 42 3.9 0.1 3 12 417 426 415 436 0.81 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF780A-203 - 641 1.1e-09 37.7 79.1 11 17 0.43 3.1e+02 1.1 1.8 3 21 445 464 443 464 0.91 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF780A-203 - 641 1.1e-09 37.7 79.1 12 17 0.036 26 4.5 0.1 3 14 473 484 471 492 0.75 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF780A-203 - 641 1.1e-09 37.7 79.1 13 17 0.012 8.3 6.1 0.1 3 21 501 520 499 520 0.84 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF780A-203 - 641 1.1e-09 37.7 79.1 14 17 0.059 42 3.8 0.1 3 13 529 539 527 548 0.78 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF780A-203 - 641 1.1e-09 37.7 79.1 15 17 0.042 30 4.3 0.2 3 15 557 569 555 576 0.81 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF780A-203 - 641 1.1e-09 37.7 79.1 16 17 0.02 14 5.4 0.3 3 20 585 603 583 604 0.79 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF780A-203 - 641 1.1e-09 37.7 79.1 17 17 0.0034 2.4 7.8 0.1 3 20 613 631 611 632 0.85 Ubiquitin-Binding Zinc Finger zinc_ribbon_15 PF17032.5 86 ZNF780A-203 - 641 2e-07 31.7 67.2 1 11 0.0066 4.7 8.0 2.7 33 81 161 208 155 211 0.82 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF780A-203 - 641 2e-07 31.7 67.2 2 11 0.0025 1.8 9.4 1.0 21 78 204 261 201 264 0.84 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF780A-203 - 641 2e-07 31.7 67.2 3 11 0.0025 1.8 9.4 4.6 31 75 242 286 222 292 0.88 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF780A-203 - 641 2e-07 31.7 67.2 4 11 0.005 3.6 8.4 2.4 26 74 293 341 289 348 0.89 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF780A-203 - 641 2e-07 31.7 67.2 5 11 0.012 8.5 7.2 4.8 24 74 319 369 305 376 0.79 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF780A-203 - 641 2e-07 31.7 67.2 6 11 0.0025 1.8 9.4 1.0 30 78 353 401 341 407 0.85 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF780A-203 - 641 2e-07 31.7 67.2 7 11 0.0014 0.99 10.2 1.4 34 75 385 426 380 435 0.87 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF780A-203 - 641 2e-07 31.7 67.2 8 11 0.075 54 4.6 2.3 38 75 417 454 404 459 0.86 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF780A-203 - 641 2e-07 31.7 67.2 9 11 0.00082 0.59 10.9 1.2 25 74 460 509 453 515 0.88 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF780A-203 - 641 2e-07 31.7 67.2 10 11 0.0079 5.7 7.8 1.2 32 75 523 566 512 571 0.85 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF780A-203 - 641 2e-07 31.7 67.2 11 11 0.00095 0.68 10.7 0.5 21 74 568 621 565 628 0.88 zinc-ribbon family # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF780A-203.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF780A-203.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF780A-203.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF780A-203.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF780A-203.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:14:16 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZNF780A-204 - 642 1.5e-133 429.9 123.0 1 18 0.00018 0.13 12.7 2.2 13 25 164 176 151 177 0.87 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF780A-204 - 642 1.5e-133 429.9 123.0 2 18 1.5e-10 1.1e-07 32.0 0.2 1 24 180 203 180 204 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF780A-204 - 642 1.5e-133 429.9 123.0 3 18 5.8e-11 4.1e-08 33.3 1.8 2 25 209 232 208 232 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF780A-204 - 642 1.5e-133 429.9 123.0 4 18 3.9e-10 2.8e-07 30.7 1.0 2 25 237 260 237 261 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF780A-204 - 642 1.5e-133 429.9 123.0 5 18 1.3e-09 9.5e-07 29.0 0.1 1 25 264 288 264 289 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF780A-204 - 642 1.5e-133 429.9 123.0 6 18 1.7e-07 0.00012 22.3 1.0 1 25 292 316 292 317 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF780A-204 - 642 1.5e-133 429.9 123.0 7 18 5e-10 3.6e-07 30.3 1.4 3 25 322 344 320 344 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF780A-204 - 642 1.5e-133 429.9 123.0 8 18 1e-11 7.4e-09 35.6 0.8 2 25 349 372 348 372 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF780A-204 - 642 1.5e-133 429.9 123.0 9 18 1.8e-11 1.3e-08 34.9 1.1 2 25 377 400 376 401 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF780A-204 - 642 1.5e-133 429.9 123.0 10 18 2.1e-08 1.5e-05 25.2 0.1 1 25 404 428 404 429 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF780A-204 - 642 1.5e-133 429.9 123.0 11 18 1.2e-06 0.00084 19.7 1.0 1 25 432 456 432 457 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF780A-204 - 642 1.5e-133 429.9 123.0 12 18 7.7e-10 5.5e-07 29.7 0.1 3 25 462 484 460 485 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF780A-204 - 642 1.5e-133 429.9 123.0 13 18 4.5e-11 3.3e-08 33.6 0.3 1 24 488 511 488 512 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF780A-204 - 642 1.5e-133 429.9 123.0 14 18 8.1e-11 5.8e-08 32.8 2.2 2 25 517 540 516 541 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF780A-204 - 642 1.5e-133 429.9 123.0 15 18 6.3e-11 4.5e-08 33.2 0.9 1 24 544 567 544 568 0.97 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF780A-204 - 642 1.5e-133 429.9 123.0 16 18 4.2e-11 3e-08 33.7 2.3 1 24 572 595 572 596 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF780A-204 - 642 1.5e-133 429.9 123.0 17 18 3.8e-11 2.7e-08 33.9 0.7 2 25 601 624 600 624 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF780A-204 - 642 1.5e-133 429.9 123.0 18 18 0.011 7.6 7.2 0.1 2 13 629 640 628 641 0.94 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZNF780A-204 - 642 2.2e-79 257.7 122.9 1 17 4.2e-08 3e-05 24.2 0.4 1 23 166 188 166 188 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF780A-204 - 642 2.2e-79 257.7 122.9 2 17 5.9e-05 0.043 14.3 3.1 1 23 194 216 194 216 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF780A-204 - 642 2.2e-79 257.7 122.9 3 17 2.7e-06 0.002 18.5 0.3 1 23 222 244 222 244 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF780A-204 - 642 2.2e-79 257.7 122.9 4 17 1.2e-09 8.8e-07 29.1 0.6 1 23 250 272 250 272 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF780A-204 - 642 2.2e-79 257.7 122.9 5 17 4.2e-07 0.0003 21.1 0.4 1 23 278 300 278 300 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF780A-204 - 642 2.2e-79 257.7 122.9 6 17 8.6e-05 0.062 13.8 2.5 1 23 306 328 306 328 0.91 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF780A-204 - 642 2.2e-79 257.7 122.9 7 17 1.1e-06 0.00076 19.8 0.4 1 23 334 356 334 356 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF780A-204 - 642 2.2e-79 257.7 122.9 8 17 6.1e-06 0.0044 17.4 0.4 1 23 362 384 362 384 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF780A-204 - 642 2.2e-79 257.7 122.9 9 17 1.2e-09 8.8e-07 29.1 0.6 1 23 390 412 390 412 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF780A-204 - 642 2.2e-79 257.7 122.9 10 17 4.2e-07 0.0003 21.1 0.4 1 23 418 440 418 440 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF780A-204 - 642 2.2e-79 257.7 122.9 11 17 0.0011 0.81 10.3 3.1 1 23 446 468 446 468 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF780A-204 - 642 2.2e-79 257.7 122.9 12 17 1.1e-07 7.9e-05 22.9 0.1 1 23 474 496 474 496 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF780A-204 - 642 2.2e-79 257.7 122.9 13 17 1e-05 0.0072 16.7 0.9 1 23 502 524 502 524 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF780A-204 - 642 2.2e-79 257.7 122.9 14 17 2.8e-07 0.0002 21.6 1.1 1 23 530 552 530 552 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF780A-204 - 642 2.2e-79 257.7 122.9 15 17 6.1e-06 0.0044 17.4 3.5 1 23 558 580 558 580 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF780A-204 - 642 2.2e-79 257.7 122.9 16 17 3.6e-06 0.0026 18.1 1.6 1 23 586 608 586 608 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF780A-204 - 642 2.2e-79 257.7 122.9 17 17 2.8e-07 0.0002 21.6 0.4 1 23 614 636 614 636 0.97 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZNF780A-204 - 642 3.9e-46 151.7 123.0 1 17 3.4e-05 0.025 15.4 0.4 1 23 166 188 166 189 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF780A-204 - 642 3.9e-46 151.7 123.0 2 17 0.0035 2.5 9.1 2.8 1 23 194 216 194 217 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF780A-204 - 642 3.9e-46 151.7 123.0 3 17 0.00022 0.16 12.9 0.3 1 23 222 244 222 245 0.88 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF780A-204 - 642 3.9e-46 151.7 123.0 4 17 1.3e-05 0.009 16.8 0.7 1 23 250 272 250 273 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF780A-204 - 642 3.9e-46 151.7 123.0 5 17 4.4e-05 0.032 15.1 0.4 1 23 278 300 278 301 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF780A-204 - 642 3.9e-46 151.7 123.0 6 17 0.0028 2 9.5 2.7 1 23 306 328 306 329 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF780A-204 - 642 3.9e-46 151.7 123.0 7 17 5.4e-05 0.039 14.8 0.5 1 23 334 356 334 357 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF780A-204 - 642 3.9e-46 151.7 123.0 8 17 3.7e-05 0.027 15.3 0.4 1 23 362 384 362 385 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF780A-204 - 642 3.9e-46 151.7 123.0 9 17 1.3e-05 0.0092 16.7 0.5 1 23 390 412 390 413 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF780A-204 - 642 3.9e-46 151.7 123.0 10 17 4.4e-05 0.032 15.1 0.4 1 23 418 440 418 441 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF780A-204 - 642 3.9e-46 151.7 123.0 11 17 0.024 18 6.5 3.0 1 23 446 468 446 469 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF780A-204 - 642 3.9e-46 151.7 123.0 12 17 0.00031 0.22 12.5 0.2 1 23 474 496 474 497 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF780A-204 - 642 3.9e-46 151.7 123.0 13 17 1.8e-05 0.013 16.3 0.9 1 23 502 524 502 525 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF780A-204 - 642 3.9e-46 151.7 123.0 14 17 0.00046 0.33 11.9 0.8 1 23 530 552 530 553 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF780A-204 - 642 3.9e-46 151.7 123.0 15 17 0.00035 0.25 12.3 3.1 1 23 558 580 558 581 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF780A-204 - 642 3.9e-46 151.7 123.0 16 17 0.00011 0.077 13.9 1.6 1 23 586 608 586 609 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF780A-204 - 642 3.9e-46 151.7 123.0 17 17 6.6e-06 0.0048 17.6 0.4 1 23 614 636 614 637 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF780A-204 - 642 4.2e-33 112.7 128.8 1 17 0.00032 0.23 11.5 0.8 2 21 166 185 166 190 0.88 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF780A-204 - 642 4.2e-33 112.7 128.8 2 17 0.0019 1.4 9.0 1.1 2 12 194 204 194 204 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF780A-204 - 642 4.2e-33 112.7 128.8 3 17 0.00012 0.088 12.8 0.4 2 21 222 241 222 245 0.90 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF780A-204 - 642 4.2e-33 112.7 128.8 4 17 3.2e-05 0.023 14.7 0.9 2 20 250 268 249 273 0.81 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF780A-204 - 642 4.2e-33 112.7 128.8 5 17 3.2e-05 0.023 14.7 1.3 2 24 278 300 278 303 0.90 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF780A-204 - 642 4.2e-33 112.7 128.8 6 17 0.0081 5.8 7.0 2.4 2 20 306 324 306 326 0.96 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF780A-204 - 642 4.2e-33 112.7 128.8 7 17 0.00046 0.33 11.0 0.5 2 21 334 353 334 358 0.80 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF780A-204 - 642 4.2e-33 112.7 128.8 8 17 0.0002 0.15 12.1 0.5 2 21 362 381 362 385 0.92 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF780A-204 - 642 4.2e-33 112.7 128.8 9 17 6e-05 0.043 13.8 1.0 2 20 390 408 390 412 0.81 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF780A-204 - 642 4.2e-33 112.7 128.8 10 17 3.2e-05 0.023 14.7 1.3 2 24 418 440 418 443 0.90 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF780A-204 - 642 4.2e-33 112.7 128.8 11 17 0.77 5.5e+02 0.7 1.6 2 24 446 468 446 469 0.87 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF780A-204 - 642 4.2e-33 112.7 128.8 12 17 0.0006 0.43 10.6 0.4 2 21 474 493 474 498 0.89 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF780A-204 - 642 4.2e-33 112.7 128.8 13 17 0.00013 0.093 12.8 2.1 2 24 502 524 502 527 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF780A-204 - 642 4.2e-33 112.7 128.8 14 17 3e-06 0.0021 18.0 1.3 2 24 530 552 530 555 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF780A-204 - 642 4.2e-33 112.7 128.8 15 17 0.016 12 6.1 4.6 2 12 558 568 558 578 0.85 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF780A-204 - 642 4.2e-33 112.7 128.8 16 17 0.0009 0.64 10.1 0.2 2 12 586 596 586 606 0.95 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF780A-204 - 642 4.2e-33 112.7 128.8 17 17 8.4e-05 0.06 13.4 0.4 2 21 614 633 614 636 0.80 C2H2-type zinc finger KRAB PF01352.27 42 ZNF780A-204 - 642 3.3e-25 87.4 0.2 1 1 8.4e-28 6e-25 86.6 0.2 1 41 5 45 5 45 0.99 KRAB box zf-C2H2_jaz PF12171.8 27 ZNF780A-204 - 642 5.3e-25 87.1 76.2 1 16 2.7e-05 0.019 15.2 0.2 2 21 166 185 165 186 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF780A-204 - 642 5.3e-25 87.1 76.2 2 16 0.0039 2.8 8.3 0.5 2 22 194 214 193 214 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF780A-204 - 642 5.3e-25 87.1 76.2 3 16 0.42 3e+02 1.9 0.1 2 12 222 232 221 242 0.85 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF780A-204 - 642 5.3e-25 87.1 76.2 4 16 1.5e-05 0.011 16.0 0.3 2 21 250 269 249 270 0.95 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF780A-204 - 642 5.3e-25 87.1 76.2 5 16 0.0012 0.86 10.0 0.1 2 22 278 298 277 298 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF780A-204 - 642 5.3e-25 87.1 76.2 6 16 0.84 6e+02 0.9 1.9 2 21 306 325 305 326 0.89 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF780A-204 - 642 5.3e-25 87.1 76.2 7 16 0.099 71 3.9 0.1 2 11 334 343 333 354 0.88 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF780A-204 - 642 5.3e-25 87.1 76.2 8 16 0.051 37 4.8 0.1 2 22 362 382 361 382 0.91 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF780A-204 - 642 5.3e-25 87.1 76.2 9 16 8.8e-06 0.0063 16.8 0.2 2 21 390 409 389 410 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF780A-204 - 642 5.3e-25 87.1 76.2 10 16 0.0012 0.86 10.0 0.1 2 22 418 438 417 438 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF780A-204 - 642 5.3e-25 87.1 76.2 11 16 0.00094 0.68 10.3 0.0 2 21 474 493 473 494 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF780A-204 - 642 5.3e-25 87.1 76.2 12 16 0.079 57 4.2 0.6 2 23 502 523 501 524 0.79 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF780A-204 - 642 5.3e-25 87.1 76.2 13 16 0.0013 0.91 9.9 0.1 2 21 530 549 529 550 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF780A-204 - 642 5.3e-25 87.1 76.2 14 16 0.039 28 5.2 0.5 2 21 558 577 557 578 0.80 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF780A-204 - 642 5.3e-25 87.1 76.2 15 16 0.0049 3.5 8.0 0.2 2 22 586 606 585 606 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF780A-204 - 642 5.3e-25 87.1 76.2 16 16 0.0017 1.2 9.5 0.1 2 22 614 634 613 634 0.92 Zinc-finger double-stranded RNA-binding Zn-ribbon_8 PF09723.10 40 ZNF780A-204 - 642 1.6e-19 69.7 90.3 1 14 2.6e-05 0.019 15.1 4.0 6 36 166 203 165 207 0.90 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF780A-204 - 642 1.6e-19 69.7 90.3 2 14 0.053 38 4.5 11.2 6 34 194 229 193 261 0.78 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF780A-204 - 642 1.6e-19 69.7 90.3 3 14 0.011 8 6.7 0.6 6 17 250 261 249 273 0.81 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF780A-204 - 642 1.6e-19 69.7 90.3 4 14 9.7e-06 0.007 16.5 1.8 6 34 278 313 277 317 0.88 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF780A-204 - 642 1.6e-19 69.7 90.3 5 14 8e-05 0.058 13.5 3.1 6 34 334 369 333 372 0.90 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF780A-204 - 642 1.6e-19 69.7 90.3 6 14 0.0016 1.2 9.4 5.1 6 36 362 399 361 401 0.71 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF780A-204 - 642 1.6e-19 69.7 90.3 7 14 0.011 7.8 6.7 0.6 6 17 390 401 389 413 0.81 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF780A-204 - 642 1.6e-19 69.7 90.3 8 14 0.00041 0.29 11.3 3.9 6 33 418 452 415 460 0.88 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF780A-204 - 642 1.6e-19 69.7 90.3 9 14 7.5e-06 0.0054 16.8 3.2 6 36 474 511 473 514 0.91 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF780A-204 - 642 1.6e-19 69.7 90.3 10 14 0.00061 0.44 10.7 6.1 6 37 502 540 501 543 0.87 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF780A-204 - 642 1.6e-19 69.7 90.3 11 14 0.0038 2.8 8.2 5.1 6 36 530 567 528 571 0.87 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF780A-204 - 642 1.6e-19 69.7 90.3 12 14 0.00025 0.18 11.9 3.9 6 36 558 595 556 599 0.88 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF780A-204 - 642 1.6e-19 69.7 90.3 13 14 0.0017 1.2 9.3 5.4 6 34 586 621 585 624 0.86 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF780A-204 - 642 1.6e-19 69.7 90.3 14 14 0.01 7.4 6.8 0.4 6 16 614 624 613 635 0.84 Zinc ribbon domain zf_UBZ PF18439.1 32 ZNF780A-204 - 642 1.2e-09 37.6 79.1 1 17 0.0021 1.5 8.5 0.2 3 21 166 185 164 185 0.86 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF780A-204 - 642 1.2e-09 37.6 79.1 2 17 0.005 3.6 7.3 0.5 3 24 194 216 192 217 0.89 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF780A-204 - 642 1.2e-09 37.6 79.1 3 17 0.069 49 3.6 0.0 3 14 222 233 220 240 0.84 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF780A-204 - 642 1.2e-09 37.6 79.1 4 17 0.0066 4.7 6.9 0.1 3 20 250 268 248 269 0.81 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF780A-204 - 642 1.2e-09 37.6 79.1 5 17 0.058 42 3.9 0.1 3 12 278 287 276 297 0.81 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF780A-204 - 642 1.2e-09 37.6 79.1 6 17 0.025 18 5.0 0.9 3 20 306 324 304 325 0.90 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF780A-204 - 642 1.2e-09 37.6 79.1 7 17 0.055 39 3.9 0.1 3 13 334 344 332 353 0.82 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF780A-204 - 642 1.2e-09 37.6 79.1 8 17 0.046 33 4.2 0.1 3 18 362 378 360 381 0.78 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF780A-204 - 642 1.2e-09 37.6 79.1 9 17 0.0077 5.6 6.7 0.2 3 20 390 408 388 409 0.81 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF780A-204 - 642 1.2e-09 37.6 79.1 10 17 0.058 42 3.9 0.1 3 12 418 427 416 437 0.81 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF780A-204 - 642 1.2e-09 37.6 79.1 11 17 0.43 3.1e+02 1.1 1.8 3 21 446 465 444 465 0.91 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF780A-204 - 642 1.2e-09 37.6 79.1 12 17 0.037 26 4.5 0.1 3 14 474 485 472 493 0.75 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF780A-204 - 642 1.2e-09 37.6 79.1 13 17 0.012 8.3 6.1 0.1 3 21 502 521 500 521 0.84 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF780A-204 - 642 1.2e-09 37.6 79.1 14 17 0.059 42 3.8 0.1 3 13 530 540 528 549 0.78 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF780A-204 - 642 1.2e-09 37.6 79.1 15 17 0.042 30 4.3 0.2 3 15 558 570 556 577 0.81 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF780A-204 - 642 1.2e-09 37.6 79.1 16 17 0.02 14 5.4 0.3 3 20 586 604 584 605 0.79 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF780A-204 - 642 1.2e-09 37.6 79.1 17 17 0.0034 2.4 7.8 0.1 3 20 614 632 612 633 0.85 Ubiquitin-Binding Zinc Finger zinc_ribbon_15 PF17032.5 86 ZNF780A-204 - 642 2e-07 31.6 67.2 1 11 0.0066 4.7 8.0 2.7 33 81 162 209 156 212 0.82 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF780A-204 - 642 2e-07 31.6 67.2 2 11 0.0025 1.8 9.4 1.0 21 78 205 262 202 265 0.84 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF780A-204 - 642 2e-07 31.6 67.2 3 11 0.0025 1.8 9.4 4.6 31 75 243 287 223 293 0.88 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF780A-204 - 642 2e-07 31.6 67.2 4 11 0.005 3.6 8.4 2.4 26 74 294 342 290 349 0.89 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF780A-204 - 642 2e-07 31.6 67.2 5 11 0.012 8.5 7.2 4.8 24 74 320 370 306 377 0.79 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF780A-204 - 642 2e-07 31.6 67.2 6 11 0.0025 1.8 9.4 1.1 30 78 354 402 342 408 0.85 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF780A-204 - 642 2e-07 31.6 67.2 7 11 0.0014 0.99 10.2 1.4 34 75 386 427 381 436 0.87 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF780A-204 - 642 2e-07 31.6 67.2 8 11 0.075 54 4.6 2.3 38 75 418 455 405 460 0.86 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF780A-204 - 642 2e-07 31.6 67.2 9 11 0.00082 0.59 10.9 1.2 25 74 461 510 454 516 0.88 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF780A-204 - 642 2e-07 31.6 67.2 10 11 0.0079 5.7 7.8 1.2 32 75 524 567 513 572 0.85 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF780A-204 - 642 2e-07 31.6 67.2 11 11 0.00096 0.69 10.7 0.5 21 74 569 622 566 629 0.88 zinc-ribbon family # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF780A-204.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF780A-204.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF780A-204.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF780A-204.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF780A-204.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:14:16 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF780A-205.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF780A-205.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF780A-205.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF780A-205.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF780A-205.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:14:17 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZNF780A-206 - 641 1.4e-133 429.9 123.0 1 18 0.00018 0.13 12.7 2.2 13 25 163 175 150 176 0.87 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF780A-206 - 641 1.4e-133 429.9 123.0 2 18 1.5e-10 1.1e-07 32.0 0.2 1 24 179 202 179 203 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF780A-206 - 641 1.4e-133 429.9 123.0 3 18 5.7e-11 4.1e-08 33.3 1.8 2 25 208 231 207 231 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF780A-206 - 641 1.4e-133 429.9 123.0 4 18 3.9e-10 2.8e-07 30.7 1.0 2 25 236 259 236 260 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF780A-206 - 641 1.4e-133 429.9 123.0 5 18 1.3e-09 9.5e-07 29.0 0.1 1 25 263 287 263 288 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF780A-206 - 641 1.4e-133 429.9 123.0 6 18 1.7e-07 0.00012 22.3 1.0 1 25 291 315 291 316 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF780A-206 - 641 1.4e-133 429.9 123.0 7 18 5e-10 3.6e-07 30.3 1.4 3 25 321 343 319 343 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF780A-206 - 641 1.4e-133 429.9 123.0 8 18 1e-11 7.4e-09 35.7 0.8 2 25 348 371 347 371 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF780A-206 - 641 1.4e-133 429.9 123.0 9 18 1.8e-11 1.3e-08 34.9 1.1 2 25 376 399 375 400 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF780A-206 - 641 1.4e-133 429.9 123.0 10 18 2.1e-08 1.5e-05 25.2 0.1 1 25 403 427 403 428 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF780A-206 - 641 1.4e-133 429.9 123.0 11 18 1.2e-06 0.00084 19.7 1.0 1 25 431 455 431 456 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF780A-206 - 641 1.4e-133 429.9 123.0 12 18 7.7e-10 5.5e-07 29.7 0.1 3 25 461 483 459 484 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF780A-206 - 641 1.4e-133 429.9 123.0 13 18 4.5e-11 3.2e-08 33.6 0.3 1 24 487 510 487 511 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF780A-206 - 641 1.4e-133 429.9 123.0 14 18 8.1e-11 5.8e-08 32.8 2.2 2 25 516 539 515 540 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF780A-206 - 641 1.4e-133 429.9 123.0 15 18 6.3e-11 4.5e-08 33.2 0.9 1 24 543 566 543 567 0.97 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF780A-206 - 641 1.4e-133 429.9 123.0 16 18 4.2e-11 3e-08 33.7 2.3 1 24 571 594 571 595 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF780A-206 - 641 1.4e-133 429.9 123.0 17 18 3.8e-11 2.7e-08 33.9 0.7 2 25 600 623 599 623 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF780A-206 - 641 1.4e-133 429.9 123.0 18 18 0.011 7.6 7.2 0.1 2 13 628 639 627 640 0.94 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZNF780A-206 - 641 2.1e-79 257.8 122.9 1 17 4.2e-08 3e-05 24.2 0.4 1 23 165 187 165 187 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF780A-206 - 641 2.1e-79 257.8 122.9 2 17 5.9e-05 0.043 14.3 3.1 1 23 193 215 193 215 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF780A-206 - 641 2.1e-79 257.8 122.9 3 17 2.7e-06 0.0019 18.5 0.3 1 23 221 243 221 243 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF780A-206 - 641 2.1e-79 257.8 122.9 4 17 1.2e-09 8.8e-07 29.1 0.6 1 23 249 271 249 271 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF780A-206 - 641 2.1e-79 257.8 122.9 5 17 4.2e-07 0.0003 21.1 0.4 1 23 277 299 277 299 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF780A-206 - 641 2.1e-79 257.8 122.9 6 17 8.6e-05 0.062 13.8 2.5 1 23 305 327 305 327 0.91 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF780A-206 - 641 2.1e-79 257.8 122.9 7 17 1.1e-06 0.00076 19.8 0.4 1 23 333 355 333 355 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF780A-206 - 641 2.1e-79 257.8 122.9 8 17 6.1e-06 0.0044 17.4 0.4 1 23 361 383 361 383 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF780A-206 - 641 2.1e-79 257.8 122.9 9 17 1.2e-09 8.8e-07 29.1 0.6 1 23 389 411 389 411 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF780A-206 - 641 2.1e-79 257.8 122.9 10 17 4.2e-07 0.0003 21.1 0.4 1 23 417 439 417 439 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF780A-206 - 641 2.1e-79 257.8 122.9 11 17 0.0011 0.81 10.3 3.1 1 23 445 467 445 467 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF780A-206 - 641 2.1e-79 257.8 122.9 12 17 1.1e-07 7.9e-05 22.9 0.1 1 23 473 495 473 495 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF780A-206 - 641 2.1e-79 257.8 122.9 13 17 1e-05 0.0072 16.7 0.9 1 23 501 523 501 523 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF780A-206 - 641 2.1e-79 257.8 122.9 14 17 2.8e-07 0.0002 21.6 1.1 1 23 529 551 529 551 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF780A-206 - 641 2.1e-79 257.8 122.9 15 17 6.1e-06 0.0043 17.4 3.5 1 23 557 579 557 579 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF780A-206 - 641 2.1e-79 257.8 122.9 16 17 3.6e-06 0.0025 18.1 1.6 1 23 585 607 585 607 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF780A-206 - 641 2.1e-79 257.8 122.9 17 17 2.8e-07 0.0002 21.6 0.4 1 23 613 635 613 635 0.97 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZNF780A-206 - 641 3.8e-46 151.7 123.0 1 17 3.4e-05 0.024 15.4 0.4 1 23 165 187 165 188 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF780A-206 - 641 3.8e-46 151.7 123.0 2 17 0.0035 2.5 9.2 2.8 1 23 193 215 193 216 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF780A-206 - 641 3.8e-46 151.7 123.0 3 17 0.00022 0.16 12.9 0.3 1 23 221 243 221 244 0.88 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF780A-206 - 641 3.8e-46 151.7 123.0 4 17 1.3e-05 0.009 16.8 0.7 1 23 249 271 249 272 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF780A-206 - 641 3.8e-46 151.7 123.0 5 17 4.4e-05 0.032 15.1 0.4 1 23 277 299 277 300 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF780A-206 - 641 3.8e-46 151.7 123.0 6 17 0.0028 2 9.5 2.7 1 23 305 327 305 328 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF780A-206 - 641 3.8e-46 151.7 123.0 7 17 5.4e-05 0.039 14.8 0.5 1 23 333 355 333 356 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF780A-206 - 641 3.8e-46 151.7 123.0 8 17 3.7e-05 0.027 15.3 0.4 1 23 361 383 361 384 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF780A-206 - 641 3.8e-46 151.7 123.0 9 17 1.3e-05 0.0092 16.8 0.5 1 23 389 411 389 412 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF780A-206 - 641 3.8e-46 151.7 123.0 10 17 4.4e-05 0.032 15.1 0.4 1 23 417 439 417 440 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF780A-206 - 641 3.8e-46 151.7 123.0 11 17 0.024 17 6.5 3.0 1 23 445 467 445 468 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF780A-206 - 641 3.8e-46 151.7 123.0 12 17 0.00031 0.22 12.5 0.2 1 23 473 495 473 496 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF780A-206 - 641 3.8e-46 151.7 123.0 13 17 1.8e-05 0.013 16.3 0.9 1 23 501 523 501 524 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF780A-206 - 641 3.8e-46 151.7 123.0 14 17 0.00046 0.33 11.9 0.8 1 23 529 551 529 552 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF780A-206 - 641 3.8e-46 151.7 123.0 15 17 0.00035 0.25 12.3 3.1 1 23 557 579 557 580 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF780A-206 - 641 3.8e-46 151.7 123.0 16 17 0.00011 0.077 13.9 1.6 1 23 585 607 585 608 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF780A-206 - 641 3.8e-46 151.7 123.0 17 17 6.6e-06 0.0047 17.6 0.4 1 23 613 635 613 636 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF780A-206 - 641 4e-33 112.8 128.8 1 17 0.00032 0.23 11.5 0.8 2 21 165 184 165 189 0.88 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF780A-206 - 641 4e-33 112.8 128.8 2 17 0.0019 1.4 9.0 1.1 2 12 193 203 193 203 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF780A-206 - 641 4e-33 112.8 128.8 3 17 0.00012 0.088 12.8 0.4 2 21 221 240 221 244 0.90 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF780A-206 - 641 4e-33 112.8 128.8 4 17 3.2e-05 0.023 14.7 0.9 2 20 249 267 248 272 0.81 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF780A-206 - 641 4e-33 112.8 128.8 5 17 3.2e-05 0.023 14.7 1.3 2 24 277 299 277 302 0.90 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF780A-206 - 641 4e-33 112.8 128.8 6 17 0.008 5.8 7.0 2.4 2 20 305 323 305 325 0.96 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF780A-206 - 641 4e-33 112.8 128.8 7 17 0.00046 0.33 11.0 0.5 2 21 333 352 333 357 0.80 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF780A-206 - 641 4e-33 112.8 128.8 8 17 0.0002 0.14 12.1 0.5 2 21 361 380 361 384 0.92 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF780A-206 - 641 4e-33 112.8 128.8 9 17 6e-05 0.043 13.8 1.0 2 20 389 407 389 411 0.81 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF780A-206 - 641 4e-33 112.8 128.8 10 17 3.2e-05 0.023 14.7 1.3 2 24 417 439 417 442 0.90 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF780A-206 - 641 4e-33 112.8 128.8 11 17 0.77 5.5e+02 0.7 1.6 2 24 445 467 445 468 0.87 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF780A-206 - 641 4e-33 112.8 128.8 12 17 0.0006 0.43 10.6 0.4 2 21 473 492 473 497 0.89 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF780A-206 - 641 4e-33 112.8 128.8 13 17 0.00013 0.093 12.8 2.1 2 24 501 523 501 526 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF780A-206 - 641 4e-33 112.8 128.8 14 17 3e-06 0.0021 18.0 1.3 2 24 529 551 529 554 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF780A-206 - 641 4e-33 112.8 128.8 15 17 0.016 12 6.1 4.6 2 12 557 567 557 577 0.85 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF780A-206 - 641 4e-33 112.8 128.8 16 17 0.00089 0.64 10.1 0.2 2 12 585 595 585 605 0.95 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF780A-206 - 641 4e-33 112.8 128.8 17 17 8.3e-05 0.06 13.4 0.4 2 21 613 632 613 635 0.80 C2H2-type zinc finger KRAB PF01352.27 42 ZNF780A-206 - 641 3.3e-26 90.6 0.1 1 1 7.7e-29 5.5e-26 89.9 0.1 1 42 5 46 5 46 0.99 KRAB box zf-C2H2_jaz PF12171.8 27 ZNF780A-206 - 641 5.1e-25 87.2 76.2 1 16 2.7e-05 0.019 15.2 0.2 2 21 165 184 164 185 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF780A-206 - 641 5.1e-25 87.2 76.2 2 16 0.0039 2.8 8.3 0.5 2 22 193 213 192 213 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF780A-206 - 641 5.1e-25 87.2 76.2 3 16 0.42 3e+02 1.9 0.1 2 12 221 231 220 241 0.85 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF780A-206 - 641 5.1e-25 87.2 76.2 4 16 1.5e-05 0.011 16.0 0.3 2 21 249 268 248 269 0.95 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF780A-206 - 641 5.1e-25 87.2 76.2 5 16 0.0012 0.86 10.0 0.1 2 22 277 297 276 297 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF780A-206 - 641 5.1e-25 87.2 76.2 6 16 0.84 6e+02 0.9 1.9 2 21 305 324 304 325 0.89 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF780A-206 - 641 5.1e-25 87.2 76.2 7 16 0.099 71 3.9 0.1 2 11 333 342 332 353 0.88 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF780A-206 - 641 5.1e-25 87.2 76.2 8 16 0.051 37 4.8 0.1 2 22 361 381 360 381 0.91 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF780A-206 - 641 5.1e-25 87.2 76.2 9 16 8.8e-06 0.0063 16.8 0.2 2 21 389 408 388 409 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF780A-206 - 641 5.1e-25 87.2 76.2 10 16 0.0012 0.86 10.0 0.1 2 22 417 437 416 437 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF780A-206 - 641 5.1e-25 87.2 76.2 11 16 0.00094 0.68 10.3 0.0 2 21 473 492 472 493 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF780A-206 - 641 5.1e-25 87.2 76.2 12 16 0.079 57 4.2 0.6 2 23 501 522 500 523 0.79 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF780A-206 - 641 5.1e-25 87.2 76.2 13 16 0.0013 0.91 9.9 0.1 2 21 529 548 528 549 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF780A-206 - 641 5.1e-25 87.2 76.2 14 16 0.039 28 5.2 0.5 2 21 557 576 556 577 0.80 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF780A-206 - 641 5.1e-25 87.2 76.2 15 16 0.0049 3.5 8.0 0.2 2 22 585 605 584 605 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF780A-206 - 641 5.1e-25 87.2 76.2 16 16 0.0017 1.2 9.5 0.1 2 22 613 633 612 633 0.92 Zinc-finger double-stranded RNA-binding Zn-ribbon_8 PF09723.10 40 ZNF780A-206 - 641 1.5e-19 69.8 90.3 1 14 2.6e-05 0.018 15.1 4.0 6 36 165 202 164 206 0.90 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF780A-206 - 641 1.5e-19 69.8 90.3 2 14 0.047 34 4.7 11.1 6 34 193 228 192 261 0.77 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF780A-206 - 641 1.5e-19 69.8 90.3 3 14 0.011 8 6.7 0.6 6 17 249 260 248 272 0.81 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF780A-206 - 641 1.5e-19 69.8 90.3 4 14 9.7e-06 0.0069 16.5 1.8 6 34 277 312 276 316 0.88 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF780A-206 - 641 1.5e-19 69.8 90.3 5 14 8.1e-05 0.058 13.5 3.1 6 34 333 368 332 371 0.90 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF780A-206 - 641 1.5e-19 69.8 90.3 6 14 0.0016 1.2 9.4 5.1 6 36 361 398 360 400 0.71 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF780A-206 - 641 1.5e-19 69.8 90.3 7 14 0.011 7.7 6.7 0.6 6 17 389 400 388 412 0.81 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF780A-206 - 641 1.5e-19 69.8 90.3 8 14 0.00041 0.29 11.3 3.9 6 33 417 451 414 459 0.88 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF780A-206 - 641 1.5e-19 69.8 90.3 9 14 7.5e-06 0.0054 16.8 3.2 6 36 473 510 472 513 0.91 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF780A-206 - 641 1.5e-19 69.8 90.3 10 14 0.00061 0.44 10.7 6.1 6 37 501 539 500 542 0.87 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF780A-206 - 641 1.5e-19 69.8 90.3 11 14 0.0038 2.7 8.2 5.1 6 36 529 566 527 570 0.87 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF780A-206 - 641 1.5e-19 69.8 90.3 12 14 0.00025 0.18 11.9 3.9 6 36 557 594 555 598 0.88 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF780A-206 - 641 1.5e-19 69.8 90.3 13 14 0.0017 1.2 9.3 5.4 6 34 585 620 584 623 0.86 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF780A-206 - 641 1.5e-19 69.8 90.3 14 14 0.01 7.4 6.8 0.4 6 16 613 623 612 634 0.84 Zinc ribbon domain zf_UBZ PF18439.1 32 ZNF780A-206 - 641 1.1e-09 37.7 79.1 1 17 0.0021 1.5 8.5 0.2 3 21 165 184 163 184 0.86 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF780A-206 - 641 1.1e-09 37.7 79.1 2 17 0.005 3.6 7.3 0.5 3 24 193 215 191 216 0.89 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF780A-206 - 641 1.1e-09 37.7 79.1 3 17 0.069 49 3.6 0.0 3 14 221 232 219 239 0.84 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF780A-206 - 641 1.1e-09 37.7 79.1 4 17 0.0066 4.7 6.9 0.1 3 20 249 267 247 268 0.81 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF780A-206 - 641 1.1e-09 37.7 79.1 5 17 0.058 42 3.9 0.1 3 12 277 286 275 296 0.81 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF780A-206 - 641 1.1e-09 37.7 79.1 6 17 0.025 18 5.0 0.9 3 20 305 323 303 324 0.90 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF780A-206 - 641 1.1e-09 37.7 79.1 7 17 0.055 39 3.9 0.1 3 13 333 343 331 352 0.82 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF780A-206 - 641 1.1e-09 37.7 79.1 8 17 0.046 33 4.2 0.1 3 18 361 377 359 380 0.78 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF780A-206 - 641 1.1e-09 37.7 79.1 9 17 0.0077 5.5 6.7 0.2 3 20 389 407 387 408 0.81 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF780A-206 - 641 1.1e-09 37.7 79.1 10 17 0.058 42 3.9 0.1 3 12 417 426 415 436 0.81 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF780A-206 - 641 1.1e-09 37.7 79.1 11 17 0.43 3.1e+02 1.1 1.8 3 21 445 464 443 464 0.91 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF780A-206 - 641 1.1e-09 37.7 79.1 12 17 0.036 26 4.5 0.1 3 14 473 484 471 492 0.75 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF780A-206 - 641 1.1e-09 37.7 79.1 13 17 0.012 8.3 6.1 0.1 3 21 501 520 499 520 0.84 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF780A-206 - 641 1.1e-09 37.7 79.1 14 17 0.059 42 3.8 0.1 3 13 529 539 527 548 0.78 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF780A-206 - 641 1.1e-09 37.7 79.1 15 17 0.042 30 4.3 0.2 3 15 557 569 555 576 0.81 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF780A-206 - 641 1.1e-09 37.7 79.1 16 17 0.02 14 5.4 0.3 3 20 585 603 583 604 0.79 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF780A-206 - 641 1.1e-09 37.7 79.1 17 17 0.0034 2.4 7.8 0.1 3 20 613 631 611 632 0.85 Ubiquitin-Binding Zinc Finger zinc_ribbon_15 PF17032.5 86 ZNF780A-206 - 641 2e-07 31.7 67.2 1 11 0.0066 4.7 8.0 2.7 33 81 161 208 155 211 0.82 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF780A-206 - 641 2e-07 31.7 67.2 2 11 0.0025 1.8 9.4 1.0 21 78 204 261 201 264 0.84 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF780A-206 - 641 2e-07 31.7 67.2 3 11 0.0025 1.8 9.4 4.6 31 75 242 286 222 292 0.88 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF780A-206 - 641 2e-07 31.7 67.2 4 11 0.005 3.6 8.4 2.4 26 74 293 341 289 348 0.89 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF780A-206 - 641 2e-07 31.7 67.2 5 11 0.012 8.5 7.2 4.8 24 74 319 369 305 376 0.79 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF780A-206 - 641 2e-07 31.7 67.2 6 11 0.0025 1.8 9.4 1.0 30 78 353 401 341 407 0.85 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF780A-206 - 641 2e-07 31.7 67.2 7 11 0.0014 0.99 10.2 1.4 34 75 385 426 380 435 0.87 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF780A-206 - 641 2e-07 31.7 67.2 8 11 0.075 54 4.6 2.3 38 75 417 454 404 459 0.86 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF780A-206 - 641 2e-07 31.7 67.2 9 11 0.00082 0.59 10.9 1.2 25 74 460 509 453 515 0.88 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF780A-206 - 641 2e-07 31.7 67.2 10 11 0.0079 5.7 7.8 1.2 32 75 523 566 512 571 0.85 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF780A-206 - 641 2e-07 31.7 67.2 11 11 0.00095 0.68 10.7 0.5 21 74 568 621 565 628 0.88 zinc-ribbon family # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF780A-206.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF780A-206.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF780A-206.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF780A-206.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF780A-206.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:14:17 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF780A-207.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF780A-207.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF780A-207.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF780A-207.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF780A-207.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:14:18 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF780A-208.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF780A-208.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF780A-208.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF780A-208.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF780A-208.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:14:18 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF780A-209.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF780A-209.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF780A-209.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF780A-209.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF780A-209.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:14:18 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF780A-210.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF780A-210.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF780A-210.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF780A-210.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF780A-210.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:14:19 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF780A-211.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF780A-211.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF780A-211.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF780A-211.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF780A-211.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:14:19 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZNF781-201 - 327 1.1e-25 88.8 26.3 1 4 0.00011 0.19 12.2 0.4 8 22 26 40 24 44 0.86 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF781-201 - 327 1.1e-25 88.8 26.3 2 4 3.6e-10 6.5e-07 29.5 2.3 1 24 47 70 47 72 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF781-201 - 327 1.1e-25 88.8 26.3 3 4 4.4e-10 7.9e-07 29.2 2.3 3 25 77 99 76 100 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF781-201 - 327 1.1e-25 88.8 26.3 4 4 3.7e-11 6.7e-08 32.6 1.1 1 25 103 127 103 128 0.94 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZNF781-201 - 327 1.2e-16 60.1 27.0 1 4 3.7e-08 6.6e-05 23.2 1.5 1 23 33 55 33 55 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF781-201 - 327 1.2e-16 60.1 27.0 2 4 1.1e-05 0.02 15.3 4.4 1 23 61 83 61 83 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF781-201 - 327 1.2e-16 60.1 27.0 3 4 1.8e-08 3.2e-05 24.1 2.5 1 23 89 111 89 111 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF781-201 - 327 1.2e-16 60.1 27.0 4 4 0.00045 0.8 10.3 0.1 1 16 117 132 117 134 0.92 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZNF781-201 - 327 1.2e-09 38.2 26.5 1 5 7.1e-05 0.13 13.2 0.9 1 19 33 51 33 55 0.87 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF781-201 - 327 1.2e-09 38.2 26.5 2 5 1.8e-06 0.0032 18.2 4.2 1 23 61 83 61 84 0.97 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF781-201 - 327 1.2e-09 38.2 26.5 3 5 1.8e-05 0.032 15.1 1.7 1 23 89 111 89 112 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF781-201 - 327 1.2e-09 38.2 26.5 4 5 0.044 79 4.5 0.1 1 16 117 132 117 134 0.84 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF781-201 - 327 1.2e-09 38.2 26.5 5 5 6.5 1.2e+04 -2.2 0.0 9 20 143 154 142 155 0.83 C2H2-type zinc finger # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF781-201.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF781-201.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF781-201.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF781-201.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF781-201.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:14:19 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF781-202.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF781-202.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF781-202.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF781-202.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF781-202.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:14:20 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZNF781-203 - 327 1.1e-25 88.8 26.3 1 4 0.00011 0.19 12.2 0.4 8 22 26 40 24 44 0.86 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF781-203 - 327 1.1e-25 88.8 26.3 2 4 3.6e-10 6.5e-07 29.5 2.3 1 24 47 70 47 72 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF781-203 - 327 1.1e-25 88.8 26.3 3 4 4.4e-10 7.9e-07 29.2 2.3 3 25 77 99 76 100 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF781-203 - 327 1.1e-25 88.8 26.3 4 4 3.7e-11 6.7e-08 32.6 1.1 1 25 103 127 103 128 0.94 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZNF781-203 - 327 1.2e-16 60.1 27.0 1 4 3.7e-08 6.6e-05 23.2 1.5 1 23 33 55 33 55 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF781-203 - 327 1.2e-16 60.1 27.0 2 4 1.1e-05 0.02 15.3 4.4 1 23 61 83 61 83 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF781-203 - 327 1.2e-16 60.1 27.0 3 4 1.8e-08 3.2e-05 24.1 2.5 1 23 89 111 89 111 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF781-203 - 327 1.2e-16 60.1 27.0 4 4 0.00045 0.8 10.3 0.1 1 16 117 132 117 134 0.92 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZNF781-203 - 327 1.2e-09 38.2 26.5 1 5 7.1e-05 0.13 13.2 0.9 1 19 33 51 33 55 0.87 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF781-203 - 327 1.2e-09 38.2 26.5 2 5 1.8e-06 0.0032 18.2 4.2 1 23 61 83 61 84 0.97 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF781-203 - 327 1.2e-09 38.2 26.5 3 5 1.8e-05 0.032 15.1 1.7 1 23 89 111 89 112 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF781-203 - 327 1.2e-09 38.2 26.5 4 5 0.044 79 4.5 0.1 1 16 117 132 117 134 0.84 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF781-203 - 327 1.2e-09 38.2 26.5 5 5 6.5 1.2e+04 -2.2 0.0 9 20 143 154 142 155 0.83 C2H2-type zinc finger # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF781-203.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF781-203.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF781-203.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF781-203.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF781-203.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:14:20 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF781-204.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF781-204.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF781-204.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF781-204.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF781-204.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:14:21 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZNF782-201 - 567 5.4e-98 317.4 105.9 1 14 0.031 22 5.7 1.8 5 16 167 182 165 185 0.74 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF782-201 - 567 5.4e-98 317.4 105.9 2 14 0.0016 1.1 9.8 0.5 3 23 222 242 221 244 0.90 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF782-201 - 567 5.4e-98 317.4 105.9 3 14 1.2e-10 8.4e-08 32.3 0.5 3 25 246 272 244 273 0.81 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF782-201 - 567 5.4e-98 317.4 105.9 4 14 3.9e-12 2.8e-09 37.0 0.8 2 25 277 300 276 301 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF782-201 - 567 5.4e-98 317.4 105.9 5 14 3.5e-11 2.5e-08 34.0 1.5 2 25 305 328 304 329 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF782-201 - 567 5.4e-98 317.4 105.9 6 14 9.5e-11 6.8e-08 32.6 1.3 5 26 336 357 333 357 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF782-201 - 567 5.4e-98 317.4 105.9 7 14 5.2e-12 3.7e-09 36.6 1.0 1 25 360 384 360 384 0.97 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF782-201 - 567 5.4e-98 317.4 105.9 8 14 2.9e-11 2.1e-08 34.2 2.0 1 25 388 412 388 413 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF782-201 - 567 5.4e-98 317.4 105.9 9 14 1.1e-08 8e-06 26.0 1.8 2 25 417 440 416 441 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF782-201 - 567 5.4e-98 317.4 105.9 10 14 3.1e-11 2.2e-08 34.2 2.0 1 25 444 468 444 469 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF782-201 - 567 5.4e-98 317.4 105.9 11 14 7.5e-12 5.4e-09 36.1 0.4 1 25 472 496 472 497 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF782-201 - 567 5.4e-98 317.4 105.9 12 14 6.3e-11 4.5e-08 33.2 0.3 2 25 501 524 500 525 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF782-201 - 567 5.4e-98 317.4 105.9 13 14 6.4e-12 4.6e-09 36.3 1.0 1 25 528 552 528 553 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF782-201 - 567 5.4e-98 317.4 105.9 14 14 5.2 3.7e+03 -1.3 0.0 1 11 556 566 556 567 0.85 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZNF782-201 - 567 3.6e-76 247.6 116.2 1 15 0.0065 4.7 7.9 2.8 7 23 159 175 159 175 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF782-201 - 567 3.6e-76 247.6 116.2 2 15 0.0016 1.2 9.8 0.2 7 23 184 200 184 200 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF782-201 - 567 3.6e-76 247.6 116.2 3 15 0.00066 0.47 11.0 0.4 6 23 211 228 211 228 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF782-201 - 567 3.6e-76 247.6 116.2 4 15 0.068 49 4.7 0.1 5 17 238 250 237 251 0.90 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF782-201 - 567 3.6e-76 247.6 116.2 5 15 4.9e-09 3.5e-06 27.2 0.8 1 23 262 284 262 284 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF782-201 - 567 3.6e-76 247.6 116.2 6 15 4.7e-09 3.4e-06 27.2 0.3 1 23 290 312 290 312 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF782-201 - 567 3.6e-76 247.6 116.2 7 15 7.2e-08 5.1e-05 23.5 1.7 1 23 318 340 318 340 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF782-201 - 567 3.6e-76 247.6 116.2 8 15 3.1e-08 2.2e-05 24.6 2.8 1 23 346 368 346 368 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF782-201 - 567 3.6e-76 247.6 116.2 9 15 3.8e-08 2.7e-05 24.4 2.8 1 23 374 396 374 396 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF782-201 - 567 3.6e-76 247.6 116.2 10 15 1.8e-07 0.00013 22.2 1.6 1 23 402 424 402 424 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF782-201 - 567 3.6e-76 247.6 116.2 11 15 5.3e-09 3.8e-06 27.0 4.7 1 23 430 452 430 452 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF782-201 - 567 3.6e-76 247.6 116.2 12 15 6.5e-10 4.7e-07 29.9 1.3 1 23 458 480 458 480 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF782-201 - 567 3.6e-76 247.6 116.2 13 15 1.6e-08 1.1e-05 25.6 0.6 1 23 486 508 486 508 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF782-201 - 567 3.6e-76 247.6 116.2 14 15 1.4e-09 9.7e-07 28.9 0.7 1 23 514 536 514 536 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF782-201 - 567 3.6e-76 247.6 116.2 15 15 1.6e-08 1.1e-05 25.5 1.7 1 23 542 564 542 564 0.98 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZNF782-201 - 567 2.4e-44 146.1 110.1 1 14 0.83 6e+02 1.8 1.8 7 21 159 173 148 175 0.73 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF782-201 - 567 2.4e-44 146.1 110.1 2 14 0.59 4.2e+02 2.2 0.1 7 23 184 200 184 201 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF782-201 - 567 2.4e-44 146.1 110.1 3 14 0.017 13 7.0 0.5 6 23 211 228 208 229 0.91 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF782-201 - 567 2.4e-44 146.1 110.1 4 14 1.3e-07 9.3e-05 23.0 0.8 1 23 262 284 262 285 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF782-201 - 567 2.4e-44 146.1 110.1 5 14 2e-05 0.014 16.2 0.2 1 23 290 312 290 313 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF782-201 - 567 2.4e-44 146.1 110.1 6 14 2.2e-05 0.016 16.0 1.4 1 23 318 340 318 341 0.88 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF782-201 - 567 2.4e-44 146.1 110.1 7 14 3e-06 0.0022 18.7 1.8 1 23 346 368 346 369 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF782-201 - 567 2.4e-44 146.1 110.1 8 14 4.9e-06 0.0035 18.1 2.0 1 23 374 396 374 397 0.97 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF782-201 - 567 2.4e-44 146.1 110.1 9 14 1.8e-05 0.013 16.3 1.1 1 23 402 424 402 425 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF782-201 - 567 2.4e-44 146.1 110.1 10 14 4.7e-06 0.0034 18.1 3.5 1 23 430 452 430 453 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF782-201 - 567 2.4e-44 146.1 110.1 11 14 4.7e-07 0.00034 21.2 0.9 1 23 458 480 458 481 0.97 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF782-201 - 567 2.4e-44 146.1 110.1 12 14 3.2e-06 0.0023 18.6 0.7 1 23 486 508 486 509 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF782-201 - 567 2.4e-44 146.1 110.1 13 14 2.3e-06 0.0017 19.0 0.5 1 23 514 536 514 537 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF782-201 - 567 2.4e-44 146.1 110.1 14 14 3.1e-07 0.00022 21.8 1.1 1 23 542 564 542 565 0.96 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF782-201 - 567 3.7e-23 81.0 96.2 1 11 9.7e-05 0.07 13.2 1.0 2 24 262 284 262 287 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF782-201 - 567 3.7e-23 81.0 96.2 2 11 0.0093 6.6 6.8 0.4 2 24 290 312 290 315 0.88 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF782-201 - 567 3.7e-23 81.0 96.2 3 11 6.6e-05 0.048 13.7 1.3 2 24 318 340 318 343 0.81 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF782-201 - 567 3.7e-23 81.0 96.2 4 11 6.3e-07 0.00045 20.1 2.1 2 24 346 368 346 371 0.95 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF782-201 - 567 3.7e-23 81.0 96.2 5 11 0.00017 0.13 12.3 3.3 2 24 374 396 374 399 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF782-201 - 567 3.7e-23 81.0 96.2 6 11 0.0017 1.2 9.2 2.2 2 22 402 422 402 426 0.87 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF782-201 - 567 3.7e-23 81.0 96.2 7 11 0.073 52 4.0 4.1 2 24 430 452 430 455 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF782-201 - 567 3.7e-23 81.0 96.2 8 11 5.3e-06 0.0038 17.2 1.8 2 24 458 480 458 483 0.95 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF782-201 - 567 3.7e-23 81.0 96.2 9 11 1.4e-05 0.0098 15.9 1.3 2 24 486 508 486 511 0.95 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF782-201 - 567 3.7e-23 81.0 96.2 10 11 0.00054 0.39 10.8 0.8 2 24 514 536 514 539 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF782-201 - 567 3.7e-23 81.0 96.2 11 11 1.5e-05 0.011 15.7 1.6 2 25 542 565 542 566 0.96 C2H2-type zinc finger Zn-ribbon_8 PF09723.10 40 ZNF782-201 - 567 4.5e-11 42.7 64.9 1 12 5 3.6e+03 -1.8 0.1 14 34 220 241 218 246 0.59 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF782-201 - 567 4.5e-11 42.7 64.9 2 12 0.015 11 6.2 3.1 19 35 253 270 233 275 0.60 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF782-201 - 567 4.5e-11 42.7 64.9 3 12 0.0046 3.3 7.9 5.1 6 34 262 297 260 302 0.88 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF782-201 - 567 4.5e-11 42.7 64.9 4 12 0.0087 6.3 7.0 4.6 6 34 290 325 289 328 0.87 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF782-201 - 567 4.5e-11 42.7 64.9 5 12 0.00069 0.49 10.5 5.4 6 34 318 353 316 358 0.90 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF782-201 - 567 4.5e-11 42.7 64.9 6 12 0.0044 3.1 8.0 0.4 6 20 346 360 345 368 0.85 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF782-201 - 567 4.5e-11 42.7 64.9 7 12 0.00021 0.15 12.2 4.0 6 34 374 409 373 414 0.88 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF782-201 - 567 4.5e-11 42.7 64.9 8 12 0.00069 0.49 10.5 4.3 6 35 402 438 401 442 0.83 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF782-201 - 567 4.5e-11 42.7 64.9 9 12 0.00015 0.11 12.6 5.6 6 38 430 469 428 471 0.88 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF782-201 - 567 4.5e-11 42.7 64.9 10 12 0.0051 3.7 7.8 0.8 6 16 458 468 457 477 0.86 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF782-201 - 567 4.5e-11 42.7 64.9 11 12 9.9e-05 0.071 13.2 4.9 6 35 486 522 485 527 0.89 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF782-201 - 567 4.5e-11 42.7 64.9 12 12 0.00089 0.64 10.2 0.2 6 27 542 562 541 566 0.70 Zinc ribbon domain zf-C2H2_jaz PF12171.8 27 ZNF782-201 - 567 3.5e-09 36.7 58.6 1 13 0.96 6.9e+02 0.7 0.0 6 14 35 43 34 45 0.83 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF782-201 - 567 3.5e-09 36.7 58.6 2 13 0.95 6.8e+02 0.7 0.0 9 24 185 200 184 201 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF782-201 - 567 3.5e-09 36.7 58.6 3 13 0.00026 0.18 12.1 0.1 2 24 262 284 261 284 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF782-201 - 567 3.5e-09 36.7 58.6 4 13 0.28 2e+02 2.4 0.1 2 23 290 311 289 312 0.83 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF782-201 - 567 3.5e-09 36.7 58.6 5 13 0.02 15 6.0 0.8 2 23 318 339 317 340 0.83 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF782-201 - 567 3.5e-09 36.7 58.6 6 13 7.8e-05 0.056 13.7 0.2 2 24 346 368 345 368 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF782-201 - 567 3.5e-09 36.7 58.6 7 13 0.099 71 3.9 0.4 2 20 374 392 373 396 0.78 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF782-201 - 567 3.5e-09 36.7 58.6 8 13 0.39 2.8e+02 2.0 0.1 2 20 402 420 401 420 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF782-201 - 567 3.5e-09 36.7 58.6 9 13 1.8 1.3e+03 -0.1 1.2 2 20 430 448 429 452 0.84 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF782-201 - 567 3.5e-09 36.7 58.6 10 13 0.001 0.72 10.2 0.2 4 24 460 480 457 480 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF782-201 - 567 3.5e-09 36.7 58.6 11 13 0.00019 0.14 12.5 0.3 2 24 486 508 485 508 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF782-201 - 567 3.5e-09 36.7 58.6 12 13 0.77 5.5e+02 1.0 0.4 2 24 514 536 513 536 0.91 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF782-201 - 567 3.5e-09 36.7 58.6 13 13 0.041 29 5.1 0.2 2 22 542 562 541 562 0.92 Zinc-finger double-stranded RNA-binding zf_UBZ PF18439.1 32 ZNF782-201 - 567 2.7e-08 33.3 44.7 1 11 0.0013 0.94 9.1 0.2 3 16 262 275 260 281 0.80 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF782-201 - 567 2.7e-08 33.3 44.7 2 11 0.25 1.8e+02 1.8 0.1 3 13 290 300 288 303 0.86 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF782-201 - 567 2.7e-08 33.3 44.7 3 11 0.1 74 3.1 0.3 3 12 318 327 316 330 0.88 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF782-201 - 567 2.7e-08 33.3 44.7 4 11 0.028 20 4.9 0.1 3 13 346 356 344 360 0.88 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF782-201 - 567 2.7e-08 33.3 44.7 5 11 0.0082 5.8 6.6 0.1 3 13 374 384 372 391 0.89 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF782-201 - 567 2.7e-08 33.3 44.7 6 11 0.09 64 3.3 0.1 3 12 402 411 400 420 0.85 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF782-201 - 567 2.7e-08 33.3 44.7 7 11 0.19 1.4e+02 2.2 0.1 3 14 430 441 428 448 0.86 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF782-201 - 567 2.7e-08 33.3 44.7 8 11 0.0041 2.9 7.5 0.2 3 13 458 468 456 477 0.84 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF782-201 - 567 2.7e-08 33.3 44.7 9 11 0.015 11 5.7 0.2 3 15 486 498 484 505 0.85 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF782-201 - 567 2.7e-08 33.3 44.7 10 11 0.091 65 3.2 0.1 3 14 514 525 512 533 0.83 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF782-201 - 567 2.7e-08 33.3 44.7 11 11 0.0002 0.14 11.8 0.2 3 21 542 561 540 561 0.94 Ubiquitin-Binding Zinc Finger DUF3268 PF11672.8 118 ZNF782-201 - 567 7.3e-08 32.8 34.1 1 7 0.05 36 4.7 0.3 8 38 239 269 232 281 0.77 zinc-finger-containing domain DUF3268 PF11672.8 118 ZNF782-201 - 567 7.3e-08 32.8 34.1 2 7 0.0087 6.2 7.2 0.6 2 45 261 304 260 314 0.79 zinc-finger-containing domain DUF3268 PF11672.8 118 ZNF782-201 - 567 7.3e-08 32.8 34.1 3 7 0.0041 3 8.2 0.2 3 39 318 354 316 368 0.88 zinc-finger-containing domain DUF3268 PF11672.8 118 ZNF782-201 - 567 7.3e-08 32.8 34.1 4 7 0.0016 1.1 9.6 0.6 3 43 374 414 372 420 0.88 zinc-finger-containing domain DUF3268 PF11672.8 118 ZNF782-201 - 567 7.3e-08 32.8 34.1 5 7 2.1e-05 0.015 15.6 1.3 2 42 429 469 428 475 0.89 zinc-finger-containing domain DUF3268 PF11672.8 118 ZNF782-201 - 567 7.3e-08 32.8 34.1 6 7 1.2 8.7e+02 0.3 0.1 23 38 478 493 464 508 0.72 zinc-finger-containing domain DUF3268 PF11672.8 118 ZNF782-201 - 567 7.3e-08 32.8 34.1 7 7 0.00016 0.12 12.7 0.6 2 38 513 549 512 559 0.91 zinc-finger-containing domain # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF782-201.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF782-201.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF782-201.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF782-201.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF782-201.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:14:21 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF782-202.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF782-202.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF782-202.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF782-202.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF782-202.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:14:21 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF782-203.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF782-203.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF782-203.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF782-203.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF782-203.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:14:22 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF782-204.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF782-204.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF782-204.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF782-204.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF782-204.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:14:22 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZNF782-205 - 699 1.2e-98 319.5 99.2 1 14 0.038 28 5.3 1.8 5 16 299 314 297 317 0.74 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF782-205 - 699 1.2e-98 319.5 99.2 2 14 0.0019 1.4 9.5 0.5 3 23 354 374 353 376 0.90 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF782-205 - 699 1.2e-98 319.5 99.2 3 14 1.4e-10 1.1e-07 32.0 0.5 3 25 378 404 376 405 0.81 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF782-205 - 699 1.2e-98 319.5 99.2 4 14 4.8e-12 3.6e-09 36.6 0.8 2 25 409 432 408 433 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF782-205 - 699 1.2e-98 319.5 99.2 5 14 4.2e-11 3.2e-08 33.6 1.5 2 25 437 460 436 461 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF782-205 - 699 1.2e-98 319.5 99.2 6 14 1.2e-10 8.7e-08 32.3 1.3 5 26 468 489 465 489 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF782-205 - 699 1.2e-98 319.5 99.2 7 14 6.3e-12 4.7e-09 36.3 1.0 1 25 492 516 492 516 0.97 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF782-205 - 699 1.2e-98 319.5 99.2 8 14 3.5e-11 2.6e-08 33.9 2.0 1 25 520 544 520 545 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF782-205 - 699 1.2e-98 319.5 99.2 9 14 1.4e-08 1e-05 25.7 1.8 2 25 549 572 548 573 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF782-205 - 699 1.2e-98 319.5 99.2 10 14 3.7e-11 2.8e-08 33.8 2.0 1 25 576 600 576 601 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF782-205 - 699 1.2e-98 319.5 99.2 11 14 9.2e-12 6.9e-09 35.7 0.4 1 25 604 628 604 629 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF782-205 - 699 1.2e-98 319.5 99.2 12 14 7.8e-11 5.8e-08 32.8 0.3 2 25 633 656 632 657 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF782-205 - 699 1.2e-98 319.5 99.2 13 14 7.9e-12 5.9e-09 36.0 1.0 1 25 660 684 660 685 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF782-205 - 699 1.2e-98 319.5 99.2 14 14 6.3 4.7e+03 -1.7 0.0 1 11 688 698 688 699 0.85 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZNF782-205 - 699 1.2e-74 242.8 116.2 1 15 0.0079 5.9 7.5 2.8 7 23 291 307 291 307 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF782-205 - 699 1.2e-74 242.8 116.2 2 15 0.002 1.5 9.4 0.2 7 23 316 332 316 332 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF782-205 - 699 1.2e-74 242.8 116.2 3 15 0.0008 0.6 10.7 0.4 6 23 343 360 343 360 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF782-205 - 699 1.2e-74 242.8 116.2 4 15 0.083 62 4.3 0.1 5 17 370 382 369 383 0.90 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF782-205 - 699 1.2e-74 242.8 116.2 5 15 6e-09 4.5e-06 26.8 0.8 1 23 394 416 394 416 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF782-205 - 699 1.2e-74 242.8 116.2 6 15 5.8e-09 4.3e-06 26.9 0.3 1 23 422 444 422 444 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF782-205 - 699 1.2e-74 242.8 116.2 7 15 8.8e-08 6.6e-05 23.2 1.7 1 23 450 472 450 472 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF782-205 - 699 1.2e-74 242.8 116.2 8 15 3.8e-08 2.8e-05 24.3 2.8 1 23 478 500 478 500 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF782-205 - 699 1.2e-74 242.8 116.2 9 15 4.6e-08 3.4e-05 24.0 2.8 1 23 506 528 506 528 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF782-205 - 699 1.2e-74 242.8 116.2 10 15 2.3e-07 0.00017 21.9 1.6 1 23 534 556 534 556 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF782-205 - 699 1.2e-74 242.8 116.2 11 15 6.6e-09 4.9e-06 26.7 4.7 1 23 562 584 562 584 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF782-205 - 699 1.2e-74 242.8 116.2 12 15 8e-10 6e-07 29.6 1.3 1 23 590 612 590 612 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF782-205 - 699 1.2e-74 242.8 116.2 13 15 1.9e-08 1.4e-05 25.2 0.6 1 23 618 640 618 640 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF782-205 - 699 1.2e-74 242.8 116.2 14 15 1.7e-09 1.2e-06 28.6 0.7 1 23 646 668 646 668 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF782-205 - 699 1.2e-74 242.8 116.2 15 15 2e-08 1.5e-05 25.2 1.7 1 23 674 696 674 696 0.98 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZNF782-205 - 699 4.9e-44 145.2 106.4 1 14 0.97 7.2e+02 1.5 1.7 7 21 291 305 281 307 0.73 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF782-205 - 699 4.9e-44 145.2 106.4 2 14 0.72 5.4e+02 1.9 0.1 7 23 316 332 316 333 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF782-205 - 699 4.9e-44 145.2 106.4 3 14 0.021 16 6.7 0.5 6 23 343 360 340 361 0.91 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF782-205 - 699 4.9e-44 145.2 106.4 4 14 1.6e-07 0.00012 22.6 0.8 1 23 394 416 394 417 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF782-205 - 699 4.9e-44 145.2 106.4 5 14 2.4e-05 0.018 15.8 0.2 1 23 422 444 422 445 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF782-205 - 699 4.9e-44 145.2 106.4 6 14 2.7e-05 0.02 15.7 1.4 1 23 450 472 450 473 0.88 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF782-205 - 699 4.9e-44 145.2 106.4 7 14 3.7e-06 0.0028 18.4 1.8 1 23 478 500 478 501 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF782-205 - 699 4.9e-44 145.2 106.4 8 14 6e-06 0.0045 17.7 2.0 1 23 506 528 506 529 0.97 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF782-205 - 699 4.9e-44 145.2 106.4 9 14 2.3e-05 0.017 15.9 1.1 1 23 534 556 534 557 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF782-205 - 699 4.9e-44 145.2 106.4 10 14 5.8e-06 0.0043 17.8 3.5 1 23 562 584 562 585 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF782-205 - 699 4.9e-44 145.2 106.4 11 14 5.8e-07 0.00043 20.9 0.9 1 23 590 612 590 613 0.97 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF782-205 - 699 4.9e-44 145.2 106.4 12 14 3.9e-06 0.0029 18.3 0.7 1 23 618 640 618 641 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF782-205 - 699 4.9e-44 145.2 106.4 13 14 2.9e-06 0.0022 18.7 0.5 1 23 646 668 646 669 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF782-205 - 699 4.9e-44 145.2 106.4 14 14 3.8e-07 0.00028 21.5 1.1 1 23 674 696 674 697 0.96 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF782-205 - 699 3e-23 81.3 91.9 1 11 0.00012 0.089 12.8 1.0 2 24 394 416 394 419 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF782-205 - 699 3e-23 81.3 91.9 2 11 0.011 8.5 6.5 0.4 2 24 422 444 422 447 0.88 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF782-205 - 699 3e-23 81.3 91.9 3 11 8.1e-05 0.06 13.4 1.2 2 24 450 472 450 475 0.81 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF782-205 - 699 3e-23 81.3 91.9 4 11 7.7e-07 0.00057 19.8 2.1 2 24 478 500 478 503 0.95 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF782-205 - 699 3e-23 81.3 91.9 5 11 0.00021 0.16 12.0 3.3 2 24 506 528 506 531 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF782-205 - 699 3e-23 81.3 91.9 6 11 0.0021 1.5 8.9 2.2 2 22 534 554 534 558 0.87 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF782-205 - 699 3e-23 81.3 91.9 7 11 0.089 66 3.7 4.1 2 24 562 584 562 587 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF782-205 - 699 3e-23 81.3 91.9 8 11 6.5e-06 0.0049 16.8 1.8 2 24 590 612 590 615 0.95 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF782-205 - 699 3e-23 81.3 91.9 9 11 1.7e-05 0.013 15.5 1.3 2 24 618 640 618 643 0.95 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF782-205 - 699 3e-23 81.3 91.9 10 11 0.00066 0.49 10.4 0.8 2 24 646 668 646 671 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF782-205 - 699 3e-23 81.3 91.9 11 11 1.9e-05 0.014 15.4 1.6 2 25 674 697 674 698 0.96 C2H2-type zinc finger KRAB PF01352.27 42 ZNF782-205 - 699 2.8e-22 78.1 0.5 1 1 6.8e-25 5.1e-22 77.2 0.5 1 42 7 48 7 48 0.99 KRAB box Zn-ribbon_8 PF09723.10 40 ZNF782-205 - 699 3.5e-10 39.8 64.9 1 11 0.023 17 5.6 3.3 19 35 385 402 365 406 0.60 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF782-205 - 699 3.5e-10 39.8 64.9 2 11 0.0082 6.1 7.0 5.5 6 34 394 429 391 433 0.88 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF782-205 - 699 3.5e-10 39.8 64.9 3 11 0.016 12 6.1 4.9 6 34 422 457 421 459 0.88 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF782-205 - 699 3.5e-10 39.8 64.9 4 11 0.00084 0.62 10.2 5.4 6 34 450 485 449 490 0.90 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF782-205 - 699 3.5e-10 39.8 64.9 5 11 0.0058 4.4 7.5 0.6 6 20 478 492 475 500 0.86 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF782-205 - 699 3.5e-10 39.8 64.9 6 11 0.00025 0.19 11.9 3.9 6 34 506 541 505 546 0.88 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF782-205 - 699 3.5e-10 39.8 64.9 7 11 0.00086 0.64 10.2 4.3 6 35 534 570 532 574 0.84 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF782-205 - 699 3.5e-10 39.8 64.9 8 11 0.00021 0.16 12.1 5.7 6 38 562 601 561 603 0.88 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF782-205 - 699 3.5e-10 39.8 64.9 9 11 0.0066 5 7.3 0.9 6 16 590 600 588 608 0.87 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF782-205 - 699 3.5e-10 39.8 64.9 10 11 9.8e-05 0.074 13.2 4.6 6 35 618 654 617 659 0.89 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF782-205 - 699 3.5e-10 39.8 64.9 11 11 0.0011 0.81 9.9 0.2 6 27 674 694 673 698 0.70 Zinc ribbon domain zf-C2H2_jaz PF12171.8 27 ZNF782-205 - 699 5.4e-08 32.9 58.6 1 13 1.2 8.6e+02 0.4 0.0 6 14 167 175 166 177 0.83 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF782-205 - 699 5.4e-08 32.9 58.6 2 13 1.2 8.6e+02 0.4 0.0 9 24 317 332 316 333 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF782-205 - 699 5.4e-08 32.9 58.6 3 13 0.00031 0.23 11.8 0.1 2 24 394 416 393 416 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF782-205 - 699 5.4e-08 32.9 58.6 4 13 0.34 2.5e+02 2.1 0.1 2 23 422 443 421 444 0.82 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF782-205 - 699 5.4e-08 32.9 58.6 5 13 0.025 19 5.7 0.8 2 23 450 471 449 472 0.83 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF782-205 - 699 5.4e-08 32.9 58.6 6 13 9.6e-05 0.071 13.4 0.2 2 24 478 500 477 500 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF782-205 - 699 5.4e-08 32.9 58.6 7 13 0.12 90 3.5 0.4 2 20 506 524 505 528 0.78 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF782-205 - 699 5.4e-08 32.9 58.6 8 13 0.47 3.5e+02 1.6 0.1 2 20 534 552 533 552 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF782-205 - 699 5.4e-08 32.9 58.6 9 13 2.2 1.6e+03 -0.5 1.2 2 20 562 580 561 584 0.84 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF782-205 - 699 5.4e-08 32.9 58.6 10 13 0.0012 0.91 9.9 0.2 4 24 592 612 589 612 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF782-205 - 699 5.4e-08 32.9 58.6 11 13 0.00023 0.18 12.2 0.3 2 24 618 640 617 640 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF782-205 - 699 5.4e-08 32.9 58.6 12 13 0.94 7e+02 0.7 0.4 2 24 646 668 645 668 0.91 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF782-205 - 699 5.4e-08 32.9 58.6 13 13 0.05 37 4.8 0.2 2 22 674 694 673 694 0.92 Zinc-finger double-stranded RNA-binding DUF3268 PF11672.8 118 ZNF782-205 - 699 2.1e-07 31.3 33.4 1 7 0.056 42 4.5 0.3 8 38 371 401 363 416 0.77 zinc-finger-containing domain DUF3268 PF11672.8 118 ZNF782-205 - 699 2.1e-07 31.3 33.4 2 7 0.011 7.9 6.8 0.6 2 45 393 436 392 446 0.79 zinc-finger-containing domain DUF3268 PF11672.8 118 ZNF782-205 - 699 2.1e-07 31.3 33.4 3 7 0.0052 3.9 7.8 0.2 3 39 450 486 448 499 0.88 zinc-finger-containing domain DUF3268 PF11672.8 118 ZNF782-205 - 699 2.1e-07 31.3 33.4 4 7 0.0019 1.4 9.2 0.6 3 43 506 546 504 552 0.88 zinc-finger-containing domain DUF3268 PF11672.8 118 ZNF782-205 - 699 2.1e-07 31.3 33.4 5 7 2.7e-05 0.02 15.2 1.4 2 42 561 601 560 608 0.89 zinc-finger-containing domain DUF3268 PF11672.8 118 ZNF782-205 - 699 2.1e-07 31.3 33.4 6 7 0.44 3.3e+02 1.6 0.3 8 38 595 625 595 639 0.80 zinc-finger-containing domain DUF3268 PF11672.8 118 ZNF782-205 - 699 2.1e-07 31.3 33.4 7 7 0.0002 0.15 12.4 0.6 2 38 645 681 644 691 0.91 zinc-finger-containing domain zf_UBZ PF18439.1 32 ZNF782-205 - 699 3.4e-07 29.7 44.7 1 11 0.0016 1.2 8.8 0.2 3 16 394 407 392 413 0.80 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF782-205 - 699 3.4e-07 29.7 44.7 2 11 0.3 2.2e+02 1.5 0.1 3 13 422 432 420 435 0.86 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF782-205 - 699 3.4e-07 29.7 44.7 3 11 0.12 93 2.7 0.3 3 12 450 459 448 462 0.88 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF782-205 - 699 3.4e-07 29.7 44.7 4 11 0.034 26 4.5 0.1 3 13 478 488 476 492 0.88 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF782-205 - 699 3.4e-07 29.7 44.7 5 11 0.0099 7.4 6.3 0.1 3 13 506 516 504 523 0.89 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF782-205 - 699 3.4e-07 29.7 44.7 6 11 0.11 81 2.9 0.1 3 12 534 543 532 552 0.85 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF782-205 - 699 3.4e-07 29.7 44.7 7 11 0.24 1.8e+02 1.9 0.1 3 14 562 573 560 580 0.86 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF782-205 - 699 3.4e-07 29.7 44.7 8 11 0.005 3.7 7.2 0.2 3 13 590 600 588 609 0.84 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF782-205 - 699 3.4e-07 29.7 44.7 9 11 0.019 14 5.4 0.2 3 15 618 630 616 637 0.85 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF782-205 - 699 3.4e-07 29.7 44.7 10 11 0.11 83 2.9 0.1 3 14 646 657 644 665 0.83 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF782-205 - 699 3.4e-07 29.7 44.7 11 11 0.00024 0.18 11.4 0.2 3 21 674 693 672 693 0.94 Ubiquitin-Binding Zinc Finger C1_1 PF00130.22 53 ZNF782-205 - 699 7.5e-07 28.9 50.5 1 10 0.15 1.1e+02 2.8 2.4 10 42 134 168 128 172 0.89 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF782-205 - 699 7.5e-07 28.9 50.5 2 10 0.4 3e+02 1.4 0.4 19 36 373 401 365 406 0.54 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF782-205 - 699 7.5e-07 28.9 50.5 3 10 0.021 16 5.5 2.8 7 37 417 458 383 462 0.82 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF782-205 - 699 7.5e-07 28.9 50.5 4 10 0.057 43 4.1 2.7 9 36 447 485 438 487 0.79 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF782-205 - 699 7.5e-07 28.9 50.5 5 10 0.0013 0.95 9.4 0.8 9 37 475 514 466 518 0.83 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF782-205 - 699 7.5e-07 28.9 50.5 6 10 0.013 10 6.1 0.7 2 23 525 544 523 551 0.71 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF782-205 - 699 7.5e-07 28.9 50.5 7 10 0.00014 0.11 12.4 2.6 1 38 552 599 552 602 0.83 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF782-205 - 699 7.5e-07 28.9 50.5 8 10 0.006 4.5 7.3 1.7 3 37 582 626 580 630 0.79 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF782-205 - 699 7.5e-07 28.9 50.5 9 10 0.0035 2.6 8.0 0.8 9 38 615 655 608 658 0.79 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF782-205 - 699 7.5e-07 28.9 50.5 10 10 0.00017 0.12 12.2 0.2 7 38 641 683 635 692 0.84 Phorbol esters/diacylglycerol binding domain (C1 domain) # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF782-205.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF782-205.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF782-205.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF782-205.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF782-205.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:14:23 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF782-206.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF782-206.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF782-206.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF782-206.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF782-206.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:14:23 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF782-207.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF782-207.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF782-207.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF782-207.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF782-207.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:14:23 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZNF782-208 - 699 1.2e-98 319.5 99.2 1 14 0.038 28 5.3 1.8 5 16 299 314 297 317 0.74 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF782-208 - 699 1.2e-98 319.5 99.2 2 14 0.0019 1.4 9.5 0.5 3 23 354 374 353 376 0.90 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF782-208 - 699 1.2e-98 319.5 99.2 3 14 1.4e-10 1.1e-07 32.0 0.5 3 25 378 404 376 405 0.81 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF782-208 - 699 1.2e-98 319.5 99.2 4 14 4.8e-12 3.6e-09 36.6 0.8 2 25 409 432 408 433 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF782-208 - 699 1.2e-98 319.5 99.2 5 14 4.2e-11 3.2e-08 33.6 1.5 2 25 437 460 436 461 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF782-208 - 699 1.2e-98 319.5 99.2 6 14 1.2e-10 8.7e-08 32.3 1.3 5 26 468 489 465 489 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF782-208 - 699 1.2e-98 319.5 99.2 7 14 6.3e-12 4.7e-09 36.3 1.0 1 25 492 516 492 516 0.97 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF782-208 - 699 1.2e-98 319.5 99.2 8 14 3.5e-11 2.6e-08 33.9 2.0 1 25 520 544 520 545 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF782-208 - 699 1.2e-98 319.5 99.2 9 14 1.4e-08 1e-05 25.7 1.8 2 25 549 572 548 573 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF782-208 - 699 1.2e-98 319.5 99.2 10 14 3.7e-11 2.8e-08 33.8 2.0 1 25 576 600 576 601 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF782-208 - 699 1.2e-98 319.5 99.2 11 14 9.2e-12 6.9e-09 35.7 0.4 1 25 604 628 604 629 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF782-208 - 699 1.2e-98 319.5 99.2 12 14 7.8e-11 5.8e-08 32.8 0.3 2 25 633 656 632 657 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF782-208 - 699 1.2e-98 319.5 99.2 13 14 7.9e-12 5.9e-09 36.0 1.0 1 25 660 684 660 685 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF782-208 - 699 1.2e-98 319.5 99.2 14 14 6.3 4.7e+03 -1.7 0.0 1 11 688 698 688 699 0.85 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZNF782-208 - 699 1.2e-74 242.8 116.2 1 15 0.0079 5.9 7.5 2.8 7 23 291 307 291 307 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF782-208 - 699 1.2e-74 242.8 116.2 2 15 0.002 1.5 9.4 0.2 7 23 316 332 316 332 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF782-208 - 699 1.2e-74 242.8 116.2 3 15 0.0008 0.6 10.7 0.4 6 23 343 360 343 360 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF782-208 - 699 1.2e-74 242.8 116.2 4 15 0.083 62 4.3 0.1 5 17 370 382 369 383 0.90 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF782-208 - 699 1.2e-74 242.8 116.2 5 15 6e-09 4.5e-06 26.8 0.8 1 23 394 416 394 416 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF782-208 - 699 1.2e-74 242.8 116.2 6 15 5.8e-09 4.3e-06 26.9 0.3 1 23 422 444 422 444 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF782-208 - 699 1.2e-74 242.8 116.2 7 15 8.8e-08 6.6e-05 23.2 1.7 1 23 450 472 450 472 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF782-208 - 699 1.2e-74 242.8 116.2 8 15 3.8e-08 2.8e-05 24.3 2.8 1 23 478 500 478 500 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF782-208 - 699 1.2e-74 242.8 116.2 9 15 4.6e-08 3.4e-05 24.0 2.8 1 23 506 528 506 528 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF782-208 - 699 1.2e-74 242.8 116.2 10 15 2.3e-07 0.00017 21.9 1.6 1 23 534 556 534 556 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF782-208 - 699 1.2e-74 242.8 116.2 11 15 6.6e-09 4.9e-06 26.7 4.7 1 23 562 584 562 584 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF782-208 - 699 1.2e-74 242.8 116.2 12 15 8e-10 6e-07 29.6 1.3 1 23 590 612 590 612 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF782-208 - 699 1.2e-74 242.8 116.2 13 15 1.9e-08 1.4e-05 25.2 0.6 1 23 618 640 618 640 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF782-208 - 699 1.2e-74 242.8 116.2 14 15 1.7e-09 1.2e-06 28.6 0.7 1 23 646 668 646 668 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF782-208 - 699 1.2e-74 242.8 116.2 15 15 2e-08 1.5e-05 25.2 1.7 1 23 674 696 674 696 0.98 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZNF782-208 - 699 4.9e-44 145.2 106.4 1 14 0.97 7.2e+02 1.5 1.7 7 21 291 305 281 307 0.73 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF782-208 - 699 4.9e-44 145.2 106.4 2 14 0.72 5.4e+02 1.9 0.1 7 23 316 332 316 333 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF782-208 - 699 4.9e-44 145.2 106.4 3 14 0.021 16 6.7 0.5 6 23 343 360 340 361 0.91 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF782-208 - 699 4.9e-44 145.2 106.4 4 14 1.6e-07 0.00012 22.6 0.8 1 23 394 416 394 417 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF782-208 - 699 4.9e-44 145.2 106.4 5 14 2.4e-05 0.018 15.8 0.2 1 23 422 444 422 445 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF782-208 - 699 4.9e-44 145.2 106.4 6 14 2.7e-05 0.02 15.7 1.4 1 23 450 472 450 473 0.88 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF782-208 - 699 4.9e-44 145.2 106.4 7 14 3.7e-06 0.0028 18.4 1.8 1 23 478 500 478 501 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF782-208 - 699 4.9e-44 145.2 106.4 8 14 6e-06 0.0045 17.7 2.0 1 23 506 528 506 529 0.97 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF782-208 - 699 4.9e-44 145.2 106.4 9 14 2.3e-05 0.017 15.9 1.1 1 23 534 556 534 557 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF782-208 - 699 4.9e-44 145.2 106.4 10 14 5.8e-06 0.0043 17.8 3.5 1 23 562 584 562 585 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF782-208 - 699 4.9e-44 145.2 106.4 11 14 5.8e-07 0.00043 20.9 0.9 1 23 590 612 590 613 0.97 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF782-208 - 699 4.9e-44 145.2 106.4 12 14 3.9e-06 0.0029 18.3 0.7 1 23 618 640 618 641 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF782-208 - 699 4.9e-44 145.2 106.4 13 14 2.9e-06 0.0022 18.7 0.5 1 23 646 668 646 669 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF782-208 - 699 4.9e-44 145.2 106.4 14 14 3.8e-07 0.00028 21.5 1.1 1 23 674 696 674 697 0.96 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF782-208 - 699 3e-23 81.3 91.9 1 11 0.00012 0.089 12.8 1.0 2 24 394 416 394 419 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF782-208 - 699 3e-23 81.3 91.9 2 11 0.011 8.5 6.5 0.4 2 24 422 444 422 447 0.88 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF782-208 - 699 3e-23 81.3 91.9 3 11 8.1e-05 0.06 13.4 1.2 2 24 450 472 450 475 0.81 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF782-208 - 699 3e-23 81.3 91.9 4 11 7.7e-07 0.00057 19.8 2.1 2 24 478 500 478 503 0.95 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF782-208 - 699 3e-23 81.3 91.9 5 11 0.00021 0.16 12.0 3.3 2 24 506 528 506 531 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF782-208 - 699 3e-23 81.3 91.9 6 11 0.0021 1.5 8.9 2.2 2 22 534 554 534 558 0.87 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF782-208 - 699 3e-23 81.3 91.9 7 11 0.089 66 3.7 4.1 2 24 562 584 562 587 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF782-208 - 699 3e-23 81.3 91.9 8 11 6.5e-06 0.0049 16.8 1.8 2 24 590 612 590 615 0.95 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF782-208 - 699 3e-23 81.3 91.9 9 11 1.7e-05 0.013 15.5 1.3 2 24 618 640 618 643 0.95 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF782-208 - 699 3e-23 81.3 91.9 10 11 0.00066 0.49 10.4 0.8 2 24 646 668 646 671 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF782-208 - 699 3e-23 81.3 91.9 11 11 1.9e-05 0.014 15.4 1.6 2 25 674 697 674 698 0.96 C2H2-type zinc finger KRAB PF01352.27 42 ZNF782-208 - 699 2.8e-22 78.1 0.5 1 1 6.8e-25 5.1e-22 77.2 0.5 1 42 7 48 7 48 0.99 KRAB box Zn-ribbon_8 PF09723.10 40 ZNF782-208 - 699 3.5e-10 39.8 64.9 1 11 0.023 17 5.6 3.3 19 35 385 402 365 406 0.60 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF782-208 - 699 3.5e-10 39.8 64.9 2 11 0.0082 6.1 7.0 5.5 6 34 394 429 391 433 0.88 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF782-208 - 699 3.5e-10 39.8 64.9 3 11 0.016 12 6.1 4.9 6 34 422 457 421 459 0.88 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF782-208 - 699 3.5e-10 39.8 64.9 4 11 0.00084 0.62 10.2 5.4 6 34 450 485 449 490 0.90 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF782-208 - 699 3.5e-10 39.8 64.9 5 11 0.0058 4.4 7.5 0.6 6 20 478 492 475 500 0.86 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF782-208 - 699 3.5e-10 39.8 64.9 6 11 0.00025 0.19 11.9 3.9 6 34 506 541 505 546 0.88 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF782-208 - 699 3.5e-10 39.8 64.9 7 11 0.00086 0.64 10.2 4.3 6 35 534 570 532 574 0.84 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF782-208 - 699 3.5e-10 39.8 64.9 8 11 0.00021 0.16 12.1 5.7 6 38 562 601 561 603 0.88 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF782-208 - 699 3.5e-10 39.8 64.9 9 11 0.0066 5 7.3 0.9 6 16 590 600 588 608 0.87 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF782-208 - 699 3.5e-10 39.8 64.9 10 11 9.8e-05 0.074 13.2 4.6 6 35 618 654 617 659 0.89 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF782-208 - 699 3.5e-10 39.8 64.9 11 11 0.0011 0.81 9.9 0.2 6 27 674 694 673 698 0.70 Zinc ribbon domain zf-C2H2_jaz PF12171.8 27 ZNF782-208 - 699 5.4e-08 32.9 58.6 1 13 1.2 8.6e+02 0.4 0.0 6 14 167 175 166 177 0.83 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF782-208 - 699 5.4e-08 32.9 58.6 2 13 1.2 8.6e+02 0.4 0.0 9 24 317 332 316 333 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF782-208 - 699 5.4e-08 32.9 58.6 3 13 0.00031 0.23 11.8 0.1 2 24 394 416 393 416 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF782-208 - 699 5.4e-08 32.9 58.6 4 13 0.34 2.5e+02 2.1 0.1 2 23 422 443 421 444 0.82 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF782-208 - 699 5.4e-08 32.9 58.6 5 13 0.025 19 5.7 0.8 2 23 450 471 449 472 0.83 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF782-208 - 699 5.4e-08 32.9 58.6 6 13 9.6e-05 0.071 13.4 0.2 2 24 478 500 477 500 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF782-208 - 699 5.4e-08 32.9 58.6 7 13 0.12 90 3.5 0.4 2 20 506 524 505 528 0.78 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF782-208 - 699 5.4e-08 32.9 58.6 8 13 0.47 3.5e+02 1.6 0.1 2 20 534 552 533 552 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF782-208 - 699 5.4e-08 32.9 58.6 9 13 2.2 1.6e+03 -0.5 1.2 2 20 562 580 561 584 0.84 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF782-208 - 699 5.4e-08 32.9 58.6 10 13 0.0012 0.91 9.9 0.2 4 24 592 612 589 612 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF782-208 - 699 5.4e-08 32.9 58.6 11 13 0.00023 0.18 12.2 0.3 2 24 618 640 617 640 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF782-208 - 699 5.4e-08 32.9 58.6 12 13 0.94 7e+02 0.7 0.4 2 24 646 668 645 668 0.91 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF782-208 - 699 5.4e-08 32.9 58.6 13 13 0.05 37 4.8 0.2 2 22 674 694 673 694 0.92 Zinc-finger double-stranded RNA-binding DUF3268 PF11672.8 118 ZNF782-208 - 699 2.1e-07 31.3 33.4 1 7 0.056 42 4.5 0.3 8 38 371 401 363 416 0.77 zinc-finger-containing domain DUF3268 PF11672.8 118 ZNF782-208 - 699 2.1e-07 31.3 33.4 2 7 0.011 7.9 6.8 0.6 2 45 393 436 392 446 0.79 zinc-finger-containing domain DUF3268 PF11672.8 118 ZNF782-208 - 699 2.1e-07 31.3 33.4 3 7 0.0052 3.9 7.8 0.2 3 39 450 486 448 499 0.88 zinc-finger-containing domain DUF3268 PF11672.8 118 ZNF782-208 - 699 2.1e-07 31.3 33.4 4 7 0.0019 1.4 9.2 0.6 3 43 506 546 504 552 0.88 zinc-finger-containing domain DUF3268 PF11672.8 118 ZNF782-208 - 699 2.1e-07 31.3 33.4 5 7 2.7e-05 0.02 15.2 1.4 2 42 561 601 560 608 0.89 zinc-finger-containing domain DUF3268 PF11672.8 118 ZNF782-208 - 699 2.1e-07 31.3 33.4 6 7 0.44 3.3e+02 1.6 0.3 8 38 595 625 595 639 0.80 zinc-finger-containing domain DUF3268 PF11672.8 118 ZNF782-208 - 699 2.1e-07 31.3 33.4 7 7 0.0002 0.15 12.4 0.6 2 38 645 681 644 691 0.91 zinc-finger-containing domain zf_UBZ PF18439.1 32 ZNF782-208 - 699 3.4e-07 29.7 44.7 1 11 0.0016 1.2 8.8 0.2 3 16 394 407 392 413 0.80 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF782-208 - 699 3.4e-07 29.7 44.7 2 11 0.3 2.2e+02 1.5 0.1 3 13 422 432 420 435 0.86 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF782-208 - 699 3.4e-07 29.7 44.7 3 11 0.12 93 2.7 0.3 3 12 450 459 448 462 0.88 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF782-208 - 699 3.4e-07 29.7 44.7 4 11 0.034 26 4.5 0.1 3 13 478 488 476 492 0.88 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF782-208 - 699 3.4e-07 29.7 44.7 5 11 0.0099 7.4 6.3 0.1 3 13 506 516 504 523 0.89 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF782-208 - 699 3.4e-07 29.7 44.7 6 11 0.11 81 2.9 0.1 3 12 534 543 532 552 0.85 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF782-208 - 699 3.4e-07 29.7 44.7 7 11 0.24 1.8e+02 1.9 0.1 3 14 562 573 560 580 0.86 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF782-208 - 699 3.4e-07 29.7 44.7 8 11 0.005 3.7 7.2 0.2 3 13 590 600 588 609 0.84 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF782-208 - 699 3.4e-07 29.7 44.7 9 11 0.019 14 5.4 0.2 3 15 618 630 616 637 0.85 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF782-208 - 699 3.4e-07 29.7 44.7 10 11 0.11 83 2.9 0.1 3 14 646 657 644 665 0.83 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF782-208 - 699 3.4e-07 29.7 44.7 11 11 0.00024 0.18 11.4 0.2 3 21 674 693 672 693 0.94 Ubiquitin-Binding Zinc Finger C1_1 PF00130.22 53 ZNF782-208 - 699 7.5e-07 28.9 50.5 1 10 0.15 1.1e+02 2.8 2.4 10 42 134 168 128 172 0.89 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF782-208 - 699 7.5e-07 28.9 50.5 2 10 0.4 3e+02 1.4 0.4 19 36 373 401 365 406 0.54 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF782-208 - 699 7.5e-07 28.9 50.5 3 10 0.021 16 5.5 2.8 7 37 417 458 383 462 0.82 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF782-208 - 699 7.5e-07 28.9 50.5 4 10 0.057 43 4.1 2.7 9 36 447 485 438 487 0.79 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF782-208 - 699 7.5e-07 28.9 50.5 5 10 0.0013 0.95 9.4 0.8 9 37 475 514 466 518 0.83 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF782-208 - 699 7.5e-07 28.9 50.5 6 10 0.013 10 6.1 0.7 2 23 525 544 523 551 0.71 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF782-208 - 699 7.5e-07 28.9 50.5 7 10 0.00014 0.11 12.4 2.6 1 38 552 599 552 602 0.83 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF782-208 - 699 7.5e-07 28.9 50.5 8 10 0.006 4.5 7.3 1.7 3 37 582 626 580 630 0.79 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF782-208 - 699 7.5e-07 28.9 50.5 9 10 0.0035 2.6 8.0 0.8 9 38 615 655 608 658 0.79 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF782-208 - 699 7.5e-07 28.9 50.5 10 10 0.00017 0.12 12.2 0.2 7 38 641 683 635 692 0.84 Phorbol esters/diacylglycerol binding domain (C1 domain) # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF782-208.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF782-208.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF782-208.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF782-208.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF782-208.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:14:24 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- KRAB PF01352.27 42 ZNF783-201 - 281 6.7e-20 70.5 0.2 1 3 0.34 3e+03 -2.1 0.2 32 38 113 119 112 120 0.87 KRAB box KRAB PF01352.27 42 ZNF783-201 - 281 6.7e-20 70.5 0.2 2 3 7.5e-24 6.7e-20 70.5 0.2 1 42 142 183 142 183 0.99 KRAB box KRAB PF01352.27 42 ZNF783-201 - 281 6.7e-20 70.5 0.2 3 3 1.4 1.3e+04 -4.0 0.0 19 26 237 244 237 244 0.81 KRAB box DUF3669 PF12417.8 72 ZNF783-201 - 281 6.5e-11 42.3 0.2 1 2 0.15 1.3e+03 -0.4 0.0 34 57 26 48 23 55 0.80 Zinc finger protein DUF3669 PF12417.8 72 ZNF783-201 - 281 6.5e-11 42.3 0.2 2 2 2e-14 1.8e-10 40.8 0.1 1 71 43 112 43 113 0.93 Zinc finger protein # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF783-201.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF783-201.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF783-201.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF783-201.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF783-201.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:14:24 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-C2H2 PF00096.26 23 ZNF783-202 - 546 1.7e-22 78.6 27.5 1 4 3.5e-08 1.8e-05 24.9 0.3 1 23 349 371 349 371 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF783-202 - 546 1.7e-22 78.6 27.5 2 4 0.0029 1.5 9.4 4.0 1 23 436 458 436 458 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF783-202 - 546 1.7e-22 78.6 27.5 3 4 9.1e-10 4.7e-07 29.9 0.4 3 23 468 488 467 488 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF783-202 - 546 1.7e-22 78.6 27.5 4 4 3.4e-09 1.7e-06 28.1 3.7 1 23 494 516 494 516 0.99 Zinc finger, C2H2 type KRAB PF01352.27 42 ZNF783-202 - 546 1.7e-19 69.2 0.2 1 1 3.3e-22 1.7e-19 69.2 0.2 1 42 142 183 142 183 0.99 KRAB box zf-C2H2_4 PF13894.6 24 ZNF783-202 - 546 2e-13 49.9 23.1 1 4 0.00013 0.066 14.1 0.2 1 23 349 371 349 372 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF783-202 - 546 2e-13 49.9 23.1 2 4 0.11 55 5.0 3.5 1 23 436 458 436 459 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF783-202 - 546 2e-13 49.9 23.1 3 4 1.8e-06 0.00094 19.8 0.2 2 23 467 488 466 489 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF783-202 - 546 2e-13 49.9 23.1 4 4 1.8e-07 9.4e-05 22.9 1.8 1 23 494 516 494 517 0.96 C2H2-type zinc finger zf-H2C2_2 PF13465.6 26 ZNF783-202 - 546 4.3e-12 45.9 21.8 1 5 0.064 33 5.1 0.0 13 24 347 358 336 359 0.87 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF783-202 - 546 4.3e-12 45.9 21.8 2 5 6.8 3.5e+03 -1.3 0.1 1 9 363 371 363 376 0.85 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF783-202 - 546 4.3e-12 45.9 21.8 3 5 0.25 1.3e+02 3.3 0.3 13 24 434 445 432 447 0.87 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF783-202 - 546 4.3e-12 45.9 21.8 4 5 7.4e-05 0.038 14.4 0.0 2 25 451 476 450 477 0.85 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF783-202 - 546 4.3e-12 45.9 21.8 5 5 1e-11 5.3e-09 36.1 0.4 2 25 481 504 480 505 0.93 Zinc-finger double domain DUF3669 PF12417.8 72 ZNF783-202 - 546 2.1e-10 40.6 0.2 1 1 1e-12 5.3e-10 39.4 0.1 1 71 43 112 43 113 0.92 Zinc finger protein # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF783-202.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF783-202.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF783-202.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF783-202.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF783-202.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:14:25 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- KRAB PF01352.27 42 ZNF783-203 - 281 6.7e-20 70.5 0.2 1 3 0.34 3e+03 -2.1 0.2 32 38 113 119 112 120 0.87 KRAB box KRAB PF01352.27 42 ZNF783-203 - 281 6.7e-20 70.5 0.2 2 3 7.5e-24 6.7e-20 70.5 0.2 1 42 142 183 142 183 0.99 KRAB box KRAB PF01352.27 42 ZNF783-203 - 281 6.7e-20 70.5 0.2 3 3 1.4 1.3e+04 -4.0 0.0 19 26 237 244 237 244 0.81 KRAB box DUF3669 PF12417.8 72 ZNF783-203 - 281 6.5e-11 42.3 0.2 1 2 0.15 1.3e+03 -0.4 0.0 34 57 26 48 23 55 0.80 Zinc finger protein DUF3669 PF12417.8 72 ZNF783-203 - 281 6.5e-11 42.3 0.2 2 2 2e-14 1.8e-10 40.8 0.1 1 71 43 112 43 113 0.93 Zinc finger protein # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF783-203.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF783-203.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF783-203.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF783-203.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF783-203.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:14:25 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF783-204.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF783-204.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF783-204.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF783-204.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF783-204.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:14:25 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF783-205.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF783-205.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF783-205.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF783-205.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF783-205.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:14:25 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZNF784-201 - 323 2.6e-22 78.2 32.3 1 7 0.053 1.2e+02 3.4 0.2 14 24 62 74 56 75 0.81 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF784-201 - 323 2.6e-22 78.2 32.3 2 7 6.7 1.5e+04 -3.3 0.2 16 21 102 107 100 109 0.80 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF784-201 - 323 2.6e-22 78.2 32.3 3 7 4.9e-10 1.1e-06 28.8 0.3 1 25 115 139 115 140 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF784-201 - 323 2.6e-22 78.2 32.3 4 7 0.0088 20 5.9 0.6 13 22 194 203 192 207 0.86 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF784-201 - 323 2.6e-22 78.2 32.3 5 7 5e-10 1.1e-06 28.8 0.3 2 25 211 234 210 235 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF784-201 - 323 2.6e-22 78.2 32.3 6 7 2.8e-10 6.3e-07 29.5 0.1 2 26 239 263 239 263 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF784-201 - 323 2.6e-22 78.2 32.3 7 7 0.065 1.5e+02 3.1 0.3 1 9 266 274 266 280 0.78 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZNF784-201 - 323 4.5e-19 67.8 41.6 1 6 0.32 7.3e+02 1.0 0.3 1 16 65 80 65 87 0.79 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF784-201 - 323 4.5e-19 67.8 41.6 2 6 2.6e-05 0.058 13.9 3.2 2 23 102 123 101 123 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF784-201 - 323 4.5e-19 67.8 41.6 3 6 6.8e-06 0.015 15.7 0.6 1 23 129 151 129 151 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF784-201 - 323 4.5e-19 67.8 41.6 4 6 4.3e-06 0.0096 16.3 1.0 1 23 196 218 196 218 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF784-201 - 323 4.5e-19 67.8 41.6 5 6 1.2e-06 0.0027 18.0 0.2 1 23 224 246 224 246 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF784-201 - 323 4.5e-19 67.8 41.6 6 6 2.2e-09 4.9e-06 26.7 4.3 1 23 252 274 252 274 0.99 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZNF784-201 - 323 2e-13 49.9 41.3 1 6 0.011 25 6.1 1.0 1 23 65 87 65 88 0.89 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF784-201 - 323 2e-13 49.9 41.3 2 6 0.011 25 6.0 3.2 2 23 102 123 101 124 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF784-201 - 323 2e-13 49.9 41.3 3 6 0.00011 0.24 12.4 0.5 1 23 129 151 129 152 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF784-201 - 323 2e-13 49.9 41.3 4 6 6.4e-06 0.014 16.1 0.8 1 23 196 218 196 219 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF784-201 - 323 2e-13 49.9 41.3 5 6 2.3e-05 0.051 14.4 0.3 1 23 224 246 224 247 0.86 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF784-201 - 323 2e-13 49.9 41.3 6 6 3.5e-07 0.00079 20.1 2.7 1 23 252 274 252 275 0.97 C2H2-type zinc finger zf-C2H2_jaz PF12171.8 27 ZNF784-201 - 323 2.8e-08 33.8 17.2 1 6 1.4 3.1e+03 -1.4 0.2 3 12 66 75 64 87 0.65 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF784-201 - 323 2.8e-08 33.8 17.2 2 6 0.8 1.8e+03 -0.6 0.1 4 21 103 120 101 121 0.82 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF784-201 - 323 2.8e-08 33.8 17.2 3 6 0.08 1.8e+02 2.6 0.1 2 12 129 139 128 139 0.90 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF784-201 - 323 2.8e-08 33.8 17.2 4 6 0.00024 0.53 10.6 0.0 2 22 196 216 195 216 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF784-201 - 323 2.8e-08 33.8 17.2 5 6 0.1 2.3e+02 2.2 0.0 4 20 226 242 223 242 0.83 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF784-201 - 323 2.8e-08 33.8 17.2 6 6 5.2e-09 1.2e-05 25.5 1.9 2 24 252 274 251 276 0.93 Zinc-finger double-stranded RNA-binding zf-met PF12874.7 25 ZNF784-201 - 323 1.3e-07 31.7 22.0 1 6 0.32 7.1e+02 0.8 0.1 1 6 65 70 65 75 0.86 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF784-201 - 323 1.3e-07 31.7 22.0 2 6 0.0031 7 7.2 0.3 3 20 103 120 101 121 0.94 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF784-201 - 323 1.3e-07 31.7 22.0 3 6 0.23 5.2e+02 1.2 0.0 1 11 129 139 129 148 0.76 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF784-201 - 323 1.3e-07 31.7 22.0 4 6 0.037 83 3.8 0.1 1 21 196 216 196 219 0.91 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF784-201 - 323 1.3e-07 31.7 22.0 5 6 0.00037 0.82 10.1 0.1 1 21 224 244 224 247 0.90 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF784-201 - 323 1.3e-07 31.7 22.0 6 6 6.6e-07 0.0015 18.9 2.5 1 23 252 274 252 276 0.90 Zinc-finger of C2H2 type # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF784-201.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF784-201.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF784-201.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF784-201.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF784-201.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:14:26 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZNF784-202 - 141 7.9e-18 64.0 15.5 1 4 0.0086 7 7.3 0.6 13 22 12 21 10 25 0.86 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF784-202 - 141 7.9e-18 64.0 15.5 2 4 4.2e-10 3.4e-07 30.4 0.3 2 25 29 52 28 53 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF784-202 - 141 7.9e-18 64.0 15.5 3 4 2.4e-10 2e-07 31.1 0.1 2 26 57 81 57 81 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF784-202 - 141 7.9e-18 64.0 15.5 4 4 0.064 52 4.5 0.3 1 9 84 92 84 98 0.78 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZNF784-202 - 141 1.2e-15 57.0 17.8 1 3 3.7e-06 0.003 17.9 1.0 1 23 14 36 14 36 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF784-202 - 141 1.2e-15 57.0 17.8 2 3 1.1e-06 0.00086 19.6 0.2 1 23 42 64 42 64 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF784-202 - 141 1.2e-15 57.0 17.8 3 3 1.9e-09 1.5e-06 28.3 4.3 1 23 70 92 70 92 0.99 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZNF784-202 - 141 2.2e-12 46.7 15.7 1 3 5.4e-06 0.0044 17.7 0.8 1 23 14 36 14 37 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF784-202 - 141 2.2e-12 46.7 15.7 2 3 1.9e-05 0.016 16.0 0.3 1 23 42 64 42 65 0.86 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF784-202 - 141 2.2e-12 46.7 15.7 3 3 3e-07 0.00024 21.7 2.7 1 23 70 92 70 93 0.97 C2H2-type zinc finger zf-C2H2_jaz PF12171.8 27 ZNF784-202 - 141 1.7e-11 44.1 4.2 1 3 0.00021 0.17 12.2 0.0 2 22 14 34 13 34 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF784-202 - 141 1.7e-11 44.1 4.2 2 3 0.092 75 3.8 0.0 4 20 44 60 41 61 0.85 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF784-202 - 141 1.7e-11 44.1 4.2 3 3 4.5e-09 3.6e-06 27.1 1.9 2 24 70 92 69 94 0.93 Zinc-finger double-stranded RNA-binding zf-met PF12874.7 25 ZNF784-202 - 141 5.1e-08 33.1 10.4 1 3 0.033 27 5.3 0.1 1 21 14 34 14 37 0.91 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF784-202 - 141 5.1e-08 33.1 10.4 2 3 0.00032 0.26 11.7 0.1 1 21 42 62 42 65 0.90 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF784-202 - 141 5.1e-08 33.1 10.4 3 3 5.7e-07 0.00047 20.5 2.5 1 24 70 93 70 94 0.90 Zinc-finger of C2H2 type # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF784-202.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF784-202.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF784-202.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF784-202.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF784-202.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:14:26 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-C2H2 PF00096.26 23 ZNF785-201 - 405 3.7e-37 124.7 38.5 1 7 6.4e-09 3.7e-06 27.1 0.8 1 23 172 194 172 194 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF785-201 - 405 3.7e-37 124.7 38.5 2 7 0.00031 0.18 12.3 1.2 1 23 200 222 200 222 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF785-201 - 405 3.7e-37 124.7 38.5 3 7 3.7e-08 2.2e-05 24.7 0.2 1 23 228 250 228 250 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF785-201 - 405 3.7e-37 124.7 38.5 4 7 1.9e-06 0.0011 19.3 0.9 1 23 256 278 256 278 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF785-201 - 405 3.7e-37 124.7 38.5 5 7 1.4e-06 0.0008 19.7 0.3 1 23 284 306 284 306 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF785-201 - 405 3.7e-37 124.7 38.5 6 7 5.6e-09 3.2e-06 27.3 0.7 1 23 312 334 312 334 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF785-201 - 405 3.7e-37 124.7 38.5 7 7 2.6e-06 0.0015 18.9 0.1 1 20 340 359 340 362 0.94 Zinc finger, C2H2 type zf-H2C2_2 PF13465.6 26 ZNF785-201 - 405 6e-37 124.5 40.3 1 7 0.023 13 6.4 0.1 14 25 171 182 165 183 0.89 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF785-201 - 405 6e-37 124.5 40.3 2 7 1.8e-06 0.0011 19.3 0.1 2 25 187 210 187 211 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF785-201 - 405 6e-37 124.5 40.3 3 7 1.8e-08 1e-05 25.7 0.5 2 25 215 238 214 239 0.90 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF785-201 - 405 6e-37 124.5 40.3 4 7 6.1e-08 3.5e-05 24.0 0.4 4 25 245 266 242 267 0.89 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF785-201 - 405 6e-37 124.5 40.3 5 7 3.8e-09 2.2e-06 27.8 0.3 5 25 274 294 271 295 0.90 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF785-201 - 405 6e-37 124.5 40.3 6 7 5.9e-10 3.4e-07 30.4 0.4 5 25 302 322 299 323 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF785-201 - 405 6e-37 124.5 40.3 7 7 8.1e-06 0.0047 17.3 0.3 4 26 329 351 327 351 0.93 Zinc-finger double domain zf-C2H2_4 PF13894.6 24 ZNF785-201 - 405 6.3e-22 76.4 37.6 1 7 3.8e-05 0.022 15.6 0.9 1 23 172 194 172 195 0.87 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF785-201 - 405 6.3e-22 76.4 37.6 2 7 0.00041 0.24 12.4 1.2 1 23 200 222 200 223 0.91 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF785-201 - 405 6.3e-22 76.4 37.6 3 7 6.8e-06 0.0039 17.9 0.1 1 23 228 250 228 251 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF785-201 - 405 6.3e-22 76.4 37.6 4 7 0.0012 0.72 10.9 0.7 1 23 256 278 256 279 0.91 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF785-201 - 405 6.3e-22 76.4 37.6 5 7 0.0022 1.3 10.1 0.3 1 23 284 306 284 307 0.84 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF785-201 - 405 6.3e-22 76.4 37.6 6 7 3.2e-06 0.0019 18.9 0.5 1 23 312 334 312 335 0.88 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF785-201 - 405 6.3e-22 76.4 37.6 7 7 7e-05 0.041 14.7 0.2 1 23 340 362 340 363 0.93 C2H2-type zinc finger KRAB PF01352.27 42 ZNF785-201 - 405 2.8e-21 74.9 0.0 1 1 1e-23 5.9e-21 73.8 0.0 2 42 29 69 28 69 0.97 KRAB box zf-LYAR PF08790.11 28 ZNF785-201 - 405 7e-09 35.4 12.1 1 7 0.034 20 5.2 0.0 2 12 173 183 172 191 0.83 LYAR-type C2HC zinc finger zf-LYAR PF08790.11 28 ZNF785-201 - 405 7e-09 35.4 12.1 2 7 0.016 9 6.3 0.1 1 15 200 214 200 218 0.91 LYAR-type C2HC zinc finger zf-LYAR PF08790.11 28 ZNF785-201 - 405 7e-09 35.4 12.1 3 7 0.07 41 4.2 0.0 3 12 230 239 228 247 0.77 LYAR-type C2HC zinc finger zf-LYAR PF08790.11 28 ZNF785-201 - 405 7e-09 35.4 12.1 4 7 0.14 80 3.3 0.2 1 11 256 266 256 269 0.87 LYAR-type C2HC zinc finger zf-LYAR PF08790.11 28 ZNF785-201 - 405 7e-09 35.4 12.1 5 7 0.016 9.5 6.2 0.1 1 13 284 296 284 300 0.87 LYAR-type C2HC zinc finger zf-LYAR PF08790.11 28 ZNF785-201 - 405 7e-09 35.4 12.1 6 7 0.081 47 4.0 0.0 3 13 314 324 312 327 0.83 LYAR-type C2HC zinc finger zf-LYAR PF08790.11 28 ZNF785-201 - 405 7e-09 35.4 12.1 7 7 0.0066 3.8 7.5 0.0 1 18 340 358 340 359 0.78 LYAR-type C2HC zinc finger Zn-ribbon_8 PF09723.10 40 ZNF785-201 - 405 1.2e-07 31.7 26.7 1 4 0.27 1.6e+02 2.5 3.3 25 35 169 180 124 183 0.83 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF785-201 - 405 1.2e-07 31.7 26.7 2 4 4.7e-05 0.027 14.6 2.3 6 38 200 239 199 240 0.87 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF785-201 - 405 1.2e-07 31.7 26.7 3 4 5.5e-05 0.032 14.4 1.3 6 33 256 290 255 294 0.87 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF785-201 - 405 1.2e-07 31.7 26.7 4 4 0.00013 0.072 13.2 0.2 6 38 312 351 311 353 0.81 Zinc ribbon domain zf-trcl PF13451.6 48 ZNF785-201 - 405 8.1e-07 28.8 7.8 1 7 0.19 1.1e+02 2.8 0.0 6 16 173 183 170 190 0.86 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF785-201 - 405 8.1e-07 28.8 7.8 2 7 1.6 9e+02 -0.1 0.1 3 14 198 209 196 212 0.82 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF785-201 - 405 8.1e-07 28.8 7.8 3 7 0.13 74 3.4 0.0 3 14 226 237 224 238 0.87 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF785-201 - 405 8.1e-07 28.8 7.8 4 7 0.0089 5.1 7.1 0.0 3 16 254 267 252 269 0.89 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF785-201 - 405 8.1e-07 28.8 7.8 5 7 0.13 75 3.3 0.0 3 18 282 297 280 298 0.87 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF785-201 - 405 8.1e-07 28.8 7.8 6 7 0.0054 3.1 7.7 0.0 3 17 310 324 308 326 0.89 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF785-201 - 405 8.1e-07 28.8 7.8 7 7 0.77 4.5e+02 0.9 0.1 4 14 339 349 336 352 0.85 Probable zinc-ribbon domain # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF785-201.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF785-201.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF785-201.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF785-201.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF785-201.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:14:27 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-C2H2 PF00096.26 23 ZNF785-202 - 390 2.7e-37 125.2 38.5 1 7 6.3e-09 3.6e-06 27.1 0.8 1 23 157 179 157 179 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF785-202 - 390 2.7e-37 125.2 38.5 2 7 0.00031 0.17 12.4 1.2 1 23 185 207 185 207 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF785-202 - 390 2.7e-37 125.2 38.5 3 7 3.7e-08 2.1e-05 24.7 0.2 1 23 213 235 213 235 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF785-202 - 390 2.7e-37 125.2 38.5 4 7 1.9e-06 0.001 19.4 0.9 1 23 241 263 241 263 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF785-202 - 390 2.7e-37 125.2 38.5 5 7 1.4e-06 0.00076 19.8 0.3 1 23 269 291 269 291 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF785-202 - 390 2.7e-37 125.2 38.5 6 7 5.5e-09 3.1e-06 27.3 0.7 1 23 297 319 297 319 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF785-202 - 390 2.7e-37 125.2 38.5 7 7 2.5e-06 0.0014 18.9 0.1 1 20 325 344 325 347 0.94 Zinc finger, C2H2 type zf-H2C2_2 PF13465.6 26 ZNF785-202 - 390 4.2e-37 125.0 40.3 1 7 0.022 13 6.5 0.1 14 25 156 167 150 168 0.89 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF785-202 - 390 4.2e-37 125.0 40.3 2 7 1.8e-06 0.001 19.4 0.1 2 25 172 195 172 196 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF785-202 - 390 4.2e-37 125.0 40.3 3 7 1.8e-08 9.9e-06 25.8 0.5 2 25 200 223 199 224 0.90 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF785-202 - 390 4.2e-37 125.0 40.3 4 7 6e-08 3.4e-05 24.1 0.4 4 25 230 251 227 252 0.89 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF785-202 - 390 4.2e-37 125.0 40.3 5 7 3.7e-09 2.1e-06 27.9 0.3 5 25 259 279 256 280 0.90 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF785-202 - 390 4.2e-37 125.0 40.3 6 7 5.8e-10 3.2e-07 30.5 0.4 5 25 287 307 284 308 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF785-202 - 390 4.2e-37 125.0 40.3 7 7 8e-06 0.0045 17.4 0.3 4 26 314 336 312 336 0.93 Zinc-finger double domain zf-C2H2_4 PF13894.6 24 ZNF785-202 - 390 4.5e-22 76.8 37.6 1 7 3.7e-05 0.021 15.6 0.9 1 23 157 179 157 180 0.87 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF785-202 - 390 4.5e-22 76.8 37.6 2 7 0.0004 0.22 12.4 1.2 1 23 185 207 185 208 0.91 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF785-202 - 390 4.5e-22 76.8 37.6 3 7 6.7e-06 0.0038 18.0 0.1 1 23 213 235 213 236 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF785-202 - 390 4.5e-22 76.8 37.6 4 7 0.0012 0.69 10.9 0.7 1 23 241 263 241 264 0.91 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF785-202 - 390 4.5e-22 76.8 37.6 5 7 0.0022 1.2 10.2 0.3 1 23 269 291 269 292 0.84 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF785-202 - 390 4.5e-22 76.8 37.6 6 7 3.2e-06 0.0018 19.0 0.5 1 23 297 319 297 320 0.88 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF785-202 - 390 4.5e-22 76.8 37.6 7 7 6.9e-05 0.039 14.8 0.2 1 23 325 347 325 348 0.93 C2H2-type zinc finger KRAB PF01352.27 42 ZNF785-202 - 390 2.7e-21 74.9 0.0 1 1 1e-23 5.6e-21 73.9 0.0 2 42 29 69 28 69 0.97 KRAB box zf-LYAR PF08790.11 28 ZNF785-202 - 390 5.2e-09 35.8 12.1 1 7 0.034 19 5.3 0.0 2 12 158 168 157 176 0.83 LYAR-type C2HC zinc finger zf-LYAR PF08790.11 28 ZNF785-202 - 390 5.2e-09 35.8 12.1 2 7 0.015 8.6 6.4 0.1 1 15 185 199 185 203 0.91 LYAR-type C2HC zinc finger zf-LYAR PF08790.11 28 ZNF785-202 - 390 5.2e-09 35.8 12.1 3 7 0.07 39 4.3 0.0 3 12 215 224 213 232 0.77 LYAR-type C2HC zinc finger zf-LYAR PF08790.11 28 ZNF785-202 - 390 5.2e-09 35.8 12.1 4 7 0.14 77 3.3 0.2 1 11 241 251 241 254 0.87 LYAR-type C2HC zinc finger zf-LYAR PF08790.11 28 ZNF785-202 - 390 5.2e-09 35.8 12.1 5 7 0.016 9.1 6.3 0.1 1 13 269 281 269 285 0.87 LYAR-type C2HC zinc finger zf-LYAR PF08790.11 28 ZNF785-202 - 390 5.2e-09 35.8 12.1 6 7 0.08 45 4.1 0.0 3 13 299 309 297 312 0.83 LYAR-type C2HC zinc finger zf-LYAR PF08790.11 28 ZNF785-202 - 390 5.2e-09 35.8 12.1 7 7 0.0065 3.6 7.6 0.0 1 18 325 343 325 344 0.78 LYAR-type C2HC zinc finger Zn-ribbon_8 PF09723.10 40 ZNF785-202 - 390 9.4e-08 32.1 26.7 1 4 0.23 1.3e+02 2.8 3.1 25 35 154 165 109 168 0.83 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF785-202 - 390 9.4e-08 32.1 26.7 2 4 4.6e-05 0.026 14.7 2.3 6 38 185 224 184 225 0.87 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF785-202 - 390 9.4e-08 32.1 26.7 3 4 5.4e-05 0.03 14.4 1.3 6 33 241 275 240 279 0.87 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF785-202 - 390 9.4e-08 32.1 26.7 4 4 0.00013 0.07 13.3 0.2 6 38 297 336 296 338 0.81 Zinc ribbon domain zf-trcl PF13451.6 48 ZNF785-202 - 390 6.2e-07 29.2 7.8 1 7 0.19 1.1e+02 2.9 0.0 6 16 158 168 155 175 0.86 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF785-202 - 390 6.2e-07 29.2 7.8 2 7 1.5 8.6e+02 -0.1 0.1 3 14 183 194 181 197 0.82 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF785-202 - 390 6.2e-07 29.2 7.8 3 7 0.13 71 3.4 0.0 3 14 211 222 209 223 0.87 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF785-202 - 390 6.2e-07 29.2 7.8 4 7 0.0088 4.9 7.1 0.0 3 16 239 252 237 254 0.89 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF785-202 - 390 6.2e-07 29.2 7.8 5 7 0.13 71 3.4 0.0 3 18 267 282 265 283 0.87 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF785-202 - 390 6.2e-07 29.2 7.8 6 7 0.0054 3 7.8 0.0 3 17 295 309 293 311 0.89 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF785-202 - 390 6.2e-07 29.2 7.8 7 7 0.75 4.2e+02 0.9 0.1 4 14 324 334 321 338 0.85 Probable zinc-ribbon domain zf_UBZ PF18439.1 32 ZNF785-202 - 390 1e-06 28.2 16.4 1 7 0.0099 5.6 6.7 0.1 4 21 158 176 156 176 0.84 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF785-202 - 390 1e-06 28.2 16.4 2 7 0.11 63 3.3 0.1 3 20 185 203 183 204 0.78 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF785-202 - 390 1e-06 28.2 16.4 3 7 0.0093 5.2 6.7 0.1 3 12 213 222 211 231 0.87 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF785-202 - 390 1e-06 28.2 16.4 4 7 0.078 43 3.8 0.1 3 12 241 250 239 256 0.88 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF785-202 - 390 1e-06 28.2 16.4 5 7 0.17 98 2.7 0.1 3 12 269 278 267 284 0.81 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF785-202 - 390 1e-06 28.2 16.4 6 7 0.0039 2.2 7.9 0.0 3 20 297 315 295 316 0.77 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF785-202 - 390 1e-06 28.2 16.4 7 7 0.13 73 3.1 0.1 3 15 325 337 323 344 0.76 Ubiquitin-Binding Zinc Finger # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF785-202.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF785-202.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF785-202.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF785-202.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF785-202.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:14:27 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF785-203.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF785-203.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF785-203.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF785-203.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF785-203.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:14:27 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF785-204.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF785-204.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF785-204.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF785-204.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF785-204.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:14:28 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZNF786-201 - 696 7e-75 244.4 123.5 1 18 0.066 62 4.3 2.4 11 25 150 164 115 165 0.59 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF786-201 - 696 7e-75 244.4 123.5 2 18 0.46 4.4e+02 1.6 0.0 2 15 169 182 169 183 0.86 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF786-201 - 696 7e-75 244.4 123.5 3 18 0.0022 2 9.0 0.8 4 23 192 218 191 220 0.88 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF786-201 - 696 7e-75 244.4 123.5 4 18 9.3 8.8e+03 -2.5 0.4 14 21 282 289 273 291 0.74 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF786-201 - 696 7e-75 244.4 123.5 5 18 1.2e-05 0.012 16.0 3.9 9 24 305 320 302 321 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF786-201 - 696 7e-75 244.4 123.5 6 18 4.6e-05 0.043 14.3 0.7 5 25 329 349 326 350 0.83 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF786-201 - 696 7e-75 244.4 123.5 7 18 5.1e-09 4.8e-06 26.8 0.6 2 25 354 377 353 378 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF786-201 - 696 7e-75 244.4 123.5 8 18 3.7e-09 3.5e-06 27.2 0.4 2 24 382 404 381 405 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF786-201 - 696 7e-75 244.4 123.5 9 18 4.8e-07 0.00045 20.5 0.4 2 26 410 434 409 434 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF786-201 - 696 7e-75 244.4 123.5 10 18 1.2e-09 1.1e-06 28.8 1.4 2 24 438 460 437 461 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF786-201 - 696 7e-75 244.4 123.5 11 18 8.7e-06 0.0082 16.5 2.1 2 26 466 490 466 490 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF786-201 - 696 7e-75 244.4 123.5 12 18 3.5e-10 3.3e-07 30.4 0.7 2 24 494 516 493 517 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF786-201 - 696 7e-75 244.4 123.5 13 18 1.7e-10 1.6e-07 31.4 0.5 2 24 522 544 521 545 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF786-201 - 696 7e-75 244.4 123.5 14 18 0.01 9.8 6.8 0.1 3 24 551 571 549 573 0.81 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF786-201 - 696 7e-75 244.4 123.5 15 18 2.5e-12 2.4e-09 37.2 1.4 2 24 577 599 576 600 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF786-201 - 696 7e-75 244.4 123.5 16 18 1.9e-09 1.8e-06 28.1 0.7 2 24 605 627 604 628 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF786-201 - 696 7e-75 244.4 123.5 17 18 2.8e-07 0.00026 21.3 0.6 4 24 635 655 632 657 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF786-201 - 696 7e-75 244.4 123.5 18 18 0.14 1.3e+02 3.2 0.1 2 11 661 670 660 674 0.85 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZNF786-201 - 696 1.7e-57 188.8 121.0 1 16 0.18 1.7e+02 3.0 0.1 5 23 105 123 103 123 0.90 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF786-201 - 696 1.7e-57 188.8 121.0 2 16 1.1e-06 0.001 19.4 1.6 1 23 154 176 154 176 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF786-201 - 696 1.7e-57 188.8 121.0 3 16 1.7 1.6e+03 -0.1 0.2 2 9 284 291 283 299 0.79 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF786-201 - 696 1.7e-57 188.8 121.0 4 16 0.00024 0.22 12.0 4.6 1 23 311 333 311 333 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF786-201 - 696 1.7e-57 188.8 121.0 5 16 3.2e-06 0.003 17.9 2.2 1 23 339 361 339 361 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF786-201 - 696 1.7e-57 188.8 121.0 6 16 1.3e-07 0.00012 22.3 1.4 1 23 367 389 367 389 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF786-201 - 696 1.7e-57 188.8 121.0 7 16 3.6e-07 0.00034 20.9 0.3 1 23 395 417 395 417 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF786-201 - 696 1.7e-57 188.8 121.0 8 16 4.6e-06 0.0043 17.4 4.2 1 23 423 445 423 445 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF786-201 - 696 1.7e-57 188.8 121.0 9 16 0.00097 0.91 10.1 2.7 1 23 451 473 451 473 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF786-201 - 696 1.7e-57 188.8 121.0 10 16 7.9e-09 7.5e-06 26.1 0.4 1 23 479 501 479 501 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF786-201 - 696 1.7e-57 188.8 121.0 11 16 1e-07 9.6e-05 22.6 0.8 1 23 507 529 507 529 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF786-201 - 696 1.7e-57 188.8 121.0 12 16 3.9e-06 0.0037 17.6 0.3 1 23 535 557 535 557 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF786-201 - 696 1.7e-57 188.8 121.0 13 16 7.7e-05 0.073 13.6 0.9 5 23 566 584 564 584 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF786-201 - 696 1.7e-57 188.8 121.0 14 16 1.2e-06 0.0011 19.3 0.6 1 23 590 612 590 612 0.95 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF786-201 - 696 1.7e-57 188.8 121.0 15 16 7.6e-06 0.0071 16.7 4.0 1 23 618 640 618 640 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF786-201 - 696 1.7e-57 188.8 121.0 16 16 1.3e-07 0.00012 22.3 0.1 1 23 646 668 646 668 0.97 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZNF786-201 - 696 3.5e-32 108.3 129.5 1 16 0.42 4e+02 2.3 0.4 4 23 104 123 104 124 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF786-201 - 696 3.5e-32 108.3 129.5 2 16 3.4e-06 0.0032 18.2 1.9 1 23 154 176 154 177 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF786-201 - 696 3.5e-32 108.3 129.5 3 16 3.8 3.6e+03 -0.7 0.4 2 10 284 292 283 299 0.78 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF786-201 - 696 3.5e-32 108.3 129.5 4 16 0.0013 1.2 10.1 3.2 1 23 311 333 311 334 0.87 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF786-201 - 696 3.5e-32 108.3 129.5 5 16 0.00034 0.32 11.9 2.3 1 23 339 361 339 362 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF786-201 - 696 3.5e-32 108.3 129.5 6 16 2.8e-05 0.026 15.3 0.9 1 23 367 389 367 390 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF786-201 - 696 3.5e-32 108.3 129.5 7 16 2.3e-05 0.022 15.6 0.3 1 23 395 417 395 418 0.90 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF786-201 - 696 3.5e-32 108.3 129.5 8 16 0.00025 0.24 12.3 4.2 1 23 423 445 423 446 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF786-201 - 696 3.5e-32 108.3 129.5 9 16 0.0028 2.7 9.1 2.2 1 23 451 473 451 474 0.85 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF786-201 - 696 3.5e-32 108.3 129.5 10 16 3.2e-05 0.031 15.1 0.5 1 23 479 501 479 502 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF786-201 - 696 3.5e-32 108.3 129.5 11 16 4.3e-06 0.004 17.9 0.9 1 23 507 529 507 530 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF786-201 - 696 3.5e-32 108.3 129.5 12 16 8.5e-05 0.081 13.8 0.4 1 23 535 557 535 558 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF786-201 - 696 3.5e-32 108.3 129.5 13 16 0.0034 3.2 8.8 1.1 3 23 565 584 563 585 0.91 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF786-201 - 696 3.5e-32 108.3 129.5 14 16 7.2e-05 0.068 14.0 0.7 1 23 590 612 590 613 0.90 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF786-201 - 696 3.5e-32 108.3 129.5 15 16 5.2e-05 0.049 14.5 2.8 1 23 618 640 618 641 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF786-201 - 696 3.5e-32 108.3 129.5 16 16 0.00033 0.31 12.0 0.1 1 23 646 668 646 669 0.95 C2H2-type zinc finger # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF786-201.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF786-201.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF786-201.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF786-201.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF786-201.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:14:28 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZNF786-202 - 782 6.4e-74 241.3 123.3 1 17 0.061 61 4.3 2.2 11 25 236 250 201 251 0.60 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF786-202 - 782 6.4e-74 241.3 123.3 2 17 0.5 5e+02 1.4 0.0 2 15 255 268 255 269 0.86 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF786-202 - 782 6.4e-74 241.3 123.3 3 17 0.0024 2.3 8.8 0.8 4 23 278 304 277 306 0.88 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF786-202 - 782 6.4e-74 241.3 123.3 4 17 1.3e-05 0.013 15.9 3.9 9 24 391 406 388 407 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF786-202 - 782 6.4e-74 241.3 123.3 5 17 5e-05 0.049 14.1 0.7 5 25 415 435 412 436 0.83 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF786-202 - 782 6.4e-74 241.3 123.3 6 17 5.5e-09 5.5e-06 26.6 0.6 2 25 440 463 439 464 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF786-202 - 782 6.4e-74 241.3 123.3 7 17 4e-09 4e-06 27.0 0.4 2 24 468 490 467 491 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF786-202 - 782 6.4e-74 241.3 123.3 8 17 5.2e-07 0.00052 20.3 0.4 2 26 496 520 495 520 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF786-202 - 782 6.4e-74 241.3 123.3 9 17 1.3e-09 1.3e-06 28.6 1.4 2 24 524 546 523 547 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF786-202 - 782 6.4e-74 241.3 123.3 10 17 9.4e-06 0.0094 16.4 2.1 2 26 552 576 552 576 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF786-202 - 782 6.4e-74 241.3 123.3 11 17 3.8e-10 3.8e-07 30.3 0.7 2 24 580 602 579 603 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF786-202 - 782 6.4e-74 241.3 123.3 12 17 1.9e-10 1.9e-07 31.2 0.5 2 24 608 630 607 631 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF786-202 - 782 6.4e-74 241.3 123.3 13 17 0.011 11 6.6 0.1 3 24 637 657 635 659 0.81 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF786-202 - 782 6.4e-74 241.3 123.3 14 17 2.7e-12 2.7e-09 37.0 1.4 2 24 663 685 662 686 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF786-202 - 782 6.4e-74 241.3 123.3 15 17 2.1e-09 2e-06 27.9 0.7 2 24 691 713 690 714 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF786-202 - 782 6.4e-74 241.3 123.3 16 17 3e-07 0.0003 21.1 0.6 4 24 721 741 718 743 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF786-202 - 782 6.4e-74 241.3 123.3 17 17 0.15 1.5e+02 3.0 0.1 2 11 747 756 746 760 0.85 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZNF786-202 - 782 1.8e-56 185.5 121.6 1 16 0.21 2.1e+02 2.7 0.2 5 23 191 209 190 209 0.90 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF786-202 - 782 1.8e-56 185.5 121.6 2 16 1.2e-06 0.0012 19.2 1.6 1 23 240 262 240 262 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF786-202 - 782 1.8e-56 185.5 121.6 3 16 1.8 1.8e+03 -0.3 0.2 2 9 370 377 369 385 0.79 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF786-202 - 782 1.8e-56 185.5 121.6 4 16 0.00026 0.25 11.9 4.6 1 23 397 419 397 419 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF786-202 - 782 1.8e-56 185.5 121.6 5 16 3.5e-06 0.0035 17.7 2.2 1 23 425 447 425 447 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF786-202 - 782 1.8e-56 185.5 121.6 6 16 1.4e-07 0.00014 22.2 1.4 1 23 453 475 453 475 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF786-202 - 782 1.8e-56 185.5 121.6 7 16 3.9e-07 0.00039 20.7 0.3 1 23 481 503 481 503 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF786-202 - 782 1.8e-56 185.5 121.6 8 16 5e-06 0.005 17.2 4.2 1 23 509 531 509 531 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF786-202 - 782 1.8e-56 185.5 121.6 9 16 0.001 1 9.9 2.7 1 23 537 559 537 559 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF786-202 - 782 1.8e-56 185.5 121.6 10 16 8.6e-09 8.5e-06 25.9 0.4 1 23 565 587 565 587 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF786-202 - 782 1.8e-56 185.5 121.6 11 16 1.1e-07 0.00011 22.5 0.8 1 23 593 615 593 615 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF786-202 - 782 1.8e-56 185.5 121.6 12 16 4.3e-06 0.0042 17.5 0.3 1 23 621 643 621 643 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF786-202 - 782 1.8e-56 185.5 121.6 13 16 8.4e-05 0.083 13.4 0.9 5 23 652 670 650 670 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF786-202 - 782 1.8e-56 185.5 121.6 14 16 1.3e-06 0.0013 19.1 0.6 1 23 676 698 676 698 0.95 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF786-202 - 782 1.8e-56 185.5 121.6 15 16 8.2e-06 0.0082 16.6 4.0 1 23 704 726 704 726 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF786-202 - 782 1.8e-56 185.5 121.6 16 16 1.4e-07 0.00014 22.1 0.1 1 23 732 754 732 754 0.97 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZNF786-202 - 782 6.3e-31 104.4 130.7 1 16 0.46 4.5e+02 2.1 0.4 4 23 190 209 190 210 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF786-202 - 782 6.3e-31 104.4 130.7 2 16 3.7e-06 0.0037 18.0 1.9 1 23 240 262 240 263 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF786-202 - 782 6.3e-31 104.4 130.7 3 16 4.9 4.9e+03 -1.1 0.5 2 9 370 377 369 384 0.78 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF786-202 - 782 6.3e-31 104.4 130.7 4 16 0.0014 1.4 9.9 3.2 1 23 397 419 397 420 0.87 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF786-202 - 782 6.3e-31 104.4 130.7 5 16 0.00037 0.37 11.8 2.3 1 23 425 447 425 448 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF786-202 - 782 6.3e-31 104.4 130.7 6 16 3e-05 0.03 15.2 0.9 1 23 453 475 453 476 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF786-202 - 782 6.3e-31 104.4 130.7 7 16 2.5e-05 0.025 15.4 0.3 1 23 481 503 481 504 0.90 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF786-202 - 782 6.3e-31 104.4 130.7 8 16 0.00028 0.28 12.2 4.2 1 23 509 531 509 532 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF786-202 - 782 6.3e-31 104.4 130.7 9 16 0.0031 3 8.9 2.2 1 23 537 559 537 560 0.85 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF786-202 - 782 6.3e-31 104.4 130.7 10 16 3.5e-05 0.035 14.9 0.5 1 23 565 587 565 588 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF786-202 - 782 6.3e-31 104.4 130.7 11 16 4.6e-06 0.0046 17.7 0.9 1 23 593 615 593 616 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF786-202 - 782 6.3e-31 104.4 130.7 12 16 9.3e-05 0.092 13.6 0.4 1 23 621 643 621 644 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF786-202 - 782 6.3e-31 104.4 130.7 13 16 0.0037 3.7 8.6 1.1 3 23 651 670 649 671 0.91 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF786-202 - 782 6.3e-31 104.4 130.7 14 16 7.8e-05 0.078 13.9 0.7 1 23 676 698 676 699 0.90 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF786-202 - 782 6.3e-31 104.4 130.7 15 16 5.7e-05 0.056 14.3 2.8 1 23 704 726 704 727 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF786-202 - 782 6.3e-31 104.4 130.7 16 16 0.00036 0.36 11.8 0.1 1 23 732 754 732 755 0.95 C2H2-type zinc finger KRAB PF01352.27 42 ZNF786-202 - 782 1.9e-19 69.0 0.8 1 1 3.2e-22 3.2e-19 68.3 0.8 1 42 8 49 8 49 0.98 KRAB box # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF786-202.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF786-202.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF786-202.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF786-202.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF786-202.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:14:29 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZNF789-201 - 425 1.5e-35 120.0 61.2 1 10 1.6 2e+03 -0.5 0.2 11 21 126 140 122 144 0.74 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF789-201 - 425 1.5e-35 120.0 61.2 2 10 0.0062 7.4 7.2 0.0 12 23 198 209 190 211 0.80 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF789-201 - 425 1.5e-35 120.0 61.2 3 10 3.5e-06 0.0042 17.5 0.3 4 25 218 239 216 240 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF789-201 - 425 1.5e-35 120.0 61.2 4 10 0.00014 0.17 12.4 6.0 1 25 243 267 243 268 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF789-201 - 425 1.5e-35 120.0 61.2 5 10 9.3e-11 1.1e-07 31.9 3.7 2 25 272 295 271 296 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF789-201 - 425 1.5e-35 120.0 61.2 6 10 7.5e-08 8.9e-05 22.7 0.4 2 25 300 323 299 324 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF789-201 - 425 1.5e-35 120.0 61.2 7 10 3.4e-05 0.041 14.3 1.6 5 25 331 351 331 352 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF789-201 - 425 1.5e-35 120.0 61.2 8 10 3.1e-08 3.7e-05 23.9 0.2 2 25 356 379 355 379 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF789-201 - 425 1.5e-35 120.0 61.2 9 10 3.3e-08 3.9e-05 23.9 0.1 1 25 383 407 383 407 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF789-201 - 425 1.5e-35 120.0 61.2 10 10 1.7 2.1e+03 -0.5 0.1 3 12 413 422 411 422 0.82 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZNF789-201 - 425 1.3e-33 113.6 70.7 1 10 1.7 2.1e+03 -0.5 0.4 1 14 130 147 130 148 0.82 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF789-201 - 425 1.3e-33 113.6 70.7 2 10 0.12 1.5e+02 3.1 0.0 7 21 179 193 179 194 0.90 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF789-201 - 425 1.3e-33 113.6 70.7 3 10 5.3e-06 0.0063 16.9 0.2 1 23 201 223 201 223 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF789-201 - 425 1.3e-33 113.6 70.7 4 10 2.9e-06 0.0034 17.7 1.6 1 20 229 248 229 251 0.94 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF789-201 - 425 1.3e-33 113.6 70.7 5 10 6.4e-08 7.6e-05 22.9 4.1 1 23 257 279 257 279 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF789-201 - 425 1.3e-33 113.6 70.7 6 10 5e-08 6e-05 23.3 1.3 1 23 285 307 285 307 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF789-201 - 425 1.3e-33 113.6 70.7 7 10 0.00099 1.2 9.7 4.5 1 23 313 335 313 335 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF789-201 - 425 1.3e-33 113.6 70.7 8 10 1.2e-07 0.00015 22.0 0.6 1 23 341 363 341 363 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF789-201 - 425 1.3e-33 113.6 70.7 9 10 4.1e-08 5e-05 23.5 1.1 1 23 369 391 369 391 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF789-201 - 425 1.3e-33 113.6 70.7 10 10 1.4e-05 0.017 15.6 1.7 1 23 397 419 397 419 0.97 Zinc finger, C2H2 type KRAB PF01352.27 42 ZNF789-201 - 425 5.4e-23 80.4 0.6 1 1 1e-25 1.2e-22 79.2 0.6 2 42 11 51 10 51 0.97 KRAB box zf-C2H2_4 PF13894.6 24 ZNF789-201 - 425 6.9e-15 54.5 69.9 1 10 4.2 5.1e+03 -1.1 0.2 3 14 132 147 130 152 0.65 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF789-201 - 425 6.9e-15 54.5 69.9 2 10 4.1 4.9e+03 -1.1 0.0 7 21 179 193 179 194 0.79 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF789-201 - 425 6.9e-15 54.5 69.9 3 10 0.0016 1.9 9.6 0.4 1 23 201 223 201 224 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF789-201 - 425 6.9e-15 54.5 69.9 4 10 0.00044 0.52 11.3 2.0 1 20 229 248 229 251 0.90 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF789-201 - 425 6.9e-15 54.5 69.9 5 10 0.0018 2.2 9.4 3.4 1 23 257 279 257 280 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF789-201 - 425 6.9e-15 54.5 69.9 6 10 6.8e-06 0.0081 16.9 1.1 1 23 285 307 285 308 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF789-201 - 425 6.9e-15 54.5 69.9 7 10 0.0087 10 7.2 4.5 1 23 313 335 313 336 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF789-201 - 425 6.9e-15 54.5 69.9 8 10 2.3e-05 0.028 15.2 0.5 1 23 341 363 341 364 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF789-201 - 425 6.9e-15 54.5 69.9 9 10 1.2e-05 0.015 16.1 1.0 1 23 369 391 369 392 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF789-201 - 425 6.9e-15 54.5 69.9 10 10 0.00094 1.1 10.3 2.0 1 23 397 419 397 420 0.85 C2H2-type zinc finger # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF789-201.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF789-201.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF789-201.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF789-201.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF789-201.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:14:29 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- KRAB PF01352.27 42 ZNF789-202 - 62 2.5e-24 84.6 0.6 1 1 3.3e-28 2.9e-24 84.4 0.6 2 42 11 51 10 51 0.97 KRAB box # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF789-202.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF789-202.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF789-202.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF789-202.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF789-202.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:14:30 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- KRAB PF01352.27 42 ZNF789-203 - 55 1.8e-24 85.1 0.6 1 1 1.1e-28 2e-24 84.9 0.6 2 42 4 44 3 44 0.97 KRAB box # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF789-203.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF789-203.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF789-203.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF789-203.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF789-203.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:14:30 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- KRAB PF01352.27 42 ZNF789-204 - 118 9.6e-24 82.8 0.6 1 1 8.3e-28 1.5e-23 82.2 0.6 2 42 4 44 3 44 0.97 KRAB box # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF789-204.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF789-204.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF789-204.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF789-204.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF789-204.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:14:30 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF789-205.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF789-205.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF789-205.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF789-205.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF789-205.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:14:31 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF789-206.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF789-206.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF789-206.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF789-206.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF789-206.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:14:31 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF789-207.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF789-207.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF789-207.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF789-207.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF789-207.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:14:31 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF789-208.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF789-208.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF789-208.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF789-208.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF789-208.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:14:32 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF789-209.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF789-209.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF789-209.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF789-209.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF789-209.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:14:32 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF789-210.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF789-210.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF789-210.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF789-210.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF789-210.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:14:32 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- KRAB PF01352.27 42 ZNF789-211 - 56 1.8e-24 85.1 0.6 1 1 1.2e-28 2.1e-24 84.9 0.6 2 42 4 44 3 44 0.97 KRAB box # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF789-211.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF789-211.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF789-211.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF789-211.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF789-211.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:14:33 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF789-212.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF789-212.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF789-212.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF789-212.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF789-212.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:14:33 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZNF790-201 - 636 2.8e-91 296.2 107.5 1 14 0.46 3.9e+02 1.7 0.2 4 14 187 197 186 208 0.67 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF790-201 - 636 2.8e-91 296.2 107.5 2 14 2.1e-06 0.0018 18.6 1.8 8 25 219 236 217 236 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF790-201 - 636 2.8e-91 296.2 107.5 3 14 3e-10 2.6e-07 30.8 1.1 2 24 241 263 240 264 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF790-201 - 636 2.8e-91 296.2 107.5 4 14 4e-10 3.4e-07 30.4 1.7 2 25 269 292 268 293 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF790-201 - 636 2.8e-91 296.2 107.5 5 14 6.5e-13 5.6e-10 39.2 0.4 1 25 296 320 296 321 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF790-201 - 636 2.8e-91 296.2 107.5 6 14 4.2e-12 3.6e-09 36.6 1.8 1 26 324 349 324 349 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF790-201 - 636 2.8e-91 296.2 107.5 7 14 3e-10 2.6e-07 30.8 1.8 1 24 352 375 352 377 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF790-201 - 636 2.8e-91 296.2 107.5 8 14 1.5e-07 0.00013 22.2 0.3 1 24 380 403 380 404 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF790-201 - 636 2.8e-91 296.2 107.5 9 14 4.2e-11 3.6e-08 33.5 2.3 1 25 408 432 408 432 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF790-201 - 636 2.8e-91 296.2 107.5 10 14 1.2e-06 0.001 19.4 2.5 2 26 437 461 436 461 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF790-201 - 636 2.8e-91 296.2 107.5 11 14 6.8e-10 5.8e-07 29.7 2.0 2 24 465 487 464 489 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF790-201 - 636 2.8e-91 296.2 107.5 12 14 5.6e-12 4.8e-09 36.2 0.5 2 24 493 515 492 516 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF790-201 - 636 2.8e-91 296.2 107.5 13 14 2.1e-10 1.8e-07 31.2 0.3 2 24 521 543 520 544 0.97 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF790-201 - 636 2.8e-91 296.2 107.5 14 14 0.072 61 4.3 1.3 2 18 549 565 548 573 0.87 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZNF790-201 - 636 1.7e-50 166.8 112.4 1 14 2.8e-07 0.00024 21.4 0.8 1 23 226 248 226 248 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF790-201 - 636 1.7e-50 166.8 112.4 2 14 1.6e-07 0.00014 22.1 3.2 1 23 254 276 254 276 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF790-201 - 636 1.7e-50 166.8 112.4 3 14 1.6e-06 0.0013 19.0 1.3 1 23 282 304 282 304 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF790-201 - 636 1.7e-50 166.8 112.4 4 14 1.3e-08 1.1e-05 25.6 2.3 1 23 310 332 310 332 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF790-201 - 636 1.7e-50 166.8 112.4 5 14 7.6e-09 6.5e-06 26.3 1.4 1 23 338 360 338 360 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF790-201 - 636 1.7e-50 166.8 112.4 6 14 2.5e-07 0.00022 21.5 0.3 1 23 366 388 366 388 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF790-201 - 636 1.7e-50 166.8 112.4 7 14 9.2e-07 0.00078 19.8 0.9 1 23 394 416 394 416 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF790-201 - 636 1.7e-50 166.8 112.4 8 14 1.2e-05 0.01 16.2 0.3 1 23 422 444 422 444 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF790-201 - 636 1.7e-50 166.8 112.4 9 14 2.3e-05 0.019 15.4 1.9 1 23 450 472 450 472 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF790-201 - 636 1.7e-50 166.8 112.4 10 14 7e-08 5.9e-05 23.3 0.8 1 23 478 500 478 500 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF790-201 - 636 1.7e-50 166.8 112.4 11 14 0.00032 0.27 11.8 1.2 1 23 506 528 506 528 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF790-201 - 636 1.7e-50 166.8 112.4 12 14 7.1e-06 0.006 17.0 0.3 1 23 534 556 534 556 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF790-201 - 636 1.7e-50 166.8 112.4 13 14 0.27 2.3e+02 2.6 0.1 9 21 597 609 595 610 0.89 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF790-201 - 636 1.7e-50 166.8 112.4 14 14 4.9 4.2e+03 -1.4 0.1 8 17 624 633 623 634 0.86 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZNF790-201 - 636 9.2e-30 100.8 90.0 1 13 2.7e-05 0.023 15.5 0.7 1 23 226 248 226 249 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF790-201 - 636 9.2e-30 100.8 90.0 2 13 0.00016 0.14 13.1 2.7 1 23 254 276 254 277 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF790-201 - 636 9.2e-30 100.8 90.0 3 13 6.1e-06 0.0052 17.5 1.2 1 23 282 304 282 305 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF790-201 - 636 9.2e-30 100.8 90.0 4 13 8.3e-05 0.071 14.0 1.8 1 23 310 332 310 333 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF790-201 - 636 9.2e-30 100.8 90.0 5 13 5.2e-05 0.045 14.6 1.0 1 23 338 360 338 361 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF790-201 - 636 9.2e-30 100.8 90.0 6 13 0.0013 1.1 10.3 0.3 1 23 366 388 366 389 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF790-201 - 636 9.2e-30 100.8 90.0 7 13 0.008 6.9 7.8 1.0 1 23 394 416 394 417 0.83 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF790-201 - 636 9.2e-30 100.8 90.0 8 13 4.8e-05 0.041 14.7 0.4 1 23 422 444 422 445 0.90 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF790-201 - 636 9.2e-30 100.8 90.0 9 13 0.00015 0.13 13.2 1.5 1 23 450 472 450 473 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF790-201 - 636 9.2e-30 100.8 90.0 10 13 6.3e-06 0.0054 17.5 0.6 1 23 478 500 478 501 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF790-201 - 636 9.2e-30 100.8 90.0 11 13 0.0012 1 10.4 0.3 1 23 506 528 506 529 0.89 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF790-201 - 636 9.2e-30 100.8 90.0 12 13 0.0012 1 10.3 0.5 1 23 534 556 534 557 0.87 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF790-201 - 636 9.2e-30 100.8 90.0 13 13 4.5 3.9e+03 -0.8 0.3 17 24 567 574 561 574 0.79 C2H2-type zinc finger KRAB PF01352.27 42 ZNF790-201 - 636 4.9e-25 86.9 2.1 1 1 1.1e-27 9.5e-25 86.0 2.1 2 42 5 45 4 45 0.98 KRAB box zf-C2H2_6 PF13912.6 27 ZNF790-201 - 636 2.3e-18 65.7 94.5 1 13 4.4 3.8e+03 -1.9 0.1 5 11 201 207 201 207 0.91 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF790-201 - 636 2.3e-18 65.7 94.5 2 13 2.1e-07 0.00018 21.4 1.2 2 24 226 248 225 251 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF790-201 - 636 2.3e-18 65.7 94.5 3 13 0.063 54 3.9 1.0 2 12 254 264 254 276 0.91 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF790-201 - 636 2.3e-18 65.7 94.5 4 13 7.6e-05 0.065 13.3 1.6 2 24 282 304 281 307 0.87 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF790-201 - 636 2.3e-18 65.7 94.5 5 13 0.0091 7.8 6.6 0.9 2 13 310 321 310 333 0.77 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF790-201 - 636 2.3e-18 65.7 94.5 6 13 7.8e-05 0.067 13.2 1.8 2 22 338 358 338 362 0.88 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF790-201 - 636 2.3e-18 65.7 94.5 7 13 0.00015 0.12 12.4 0.3 2 20 366 384 365 386 0.84 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF790-201 - 636 2.3e-18 65.7 94.5 8 13 0.87 7.4e+02 0.3 1.2 2 11 394 403 394 403 0.89 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF790-201 - 636 2.3e-18 65.7 94.5 9 13 0.00073 0.63 10.1 1.2 2 11 422 431 422 432 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF790-201 - 636 2.3e-18 65.7 94.5 10 13 0.00031 0.27 11.3 0.7 2 11 450 459 449 470 0.95 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF790-201 - 636 2.3e-18 65.7 94.5 11 13 1.2e-05 0.01 15.8 1.3 2 24 478 500 477 503 0.92 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF790-201 - 636 2.3e-18 65.7 94.5 12 13 0.0097 8.3 6.5 0.1 2 11 506 515 506 528 0.88 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF790-201 - 636 2.3e-18 65.7 94.5 13 13 0.00011 0.096 12.7 0.5 2 24 534 556 534 558 0.88 C2H2-type zinc finger Zn-ribbon_8 PF09723.10 40 ZNF790-201 - 636 2.1e-13 50.1 74.0 1 10 0.00025 0.22 11.7 4.0 6 35 226 262 225 264 0.71 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF790-201 - 636 2.1e-13 50.1 74.0 2 10 0.00095 0.81 9.8 5.4 6 34 254 289 253 291 0.87 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF790-201 - 636 2.1e-13 50.1 74.0 3 10 0.00078 0.67 10.1 7.7 6 35 282 318 280 323 0.89 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF790-201 - 636 2.1e-13 50.1 74.0 4 10 5.5e-06 0.0047 17.0 2.9 6 35 338 374 337 377 0.91 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF790-201 - 636 2.1e-13 50.1 74.0 5 10 0.0021 1.8 8.8 5.4 6 35 394 430 393 432 0.89 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF790-201 - 636 2.1e-13 50.1 74.0 6 10 0.0002 0.17 12.0 6.3 6 34 422 457 420 459 0.85 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF790-201 - 636 2.1e-13 50.1 74.0 7 10 0.00059 0.51 10.5 7.7 6 35 450 486 449 489 0.87 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF790-201 - 636 2.1e-13 50.1 74.0 8 10 0.00038 0.32 11.1 7.0 6 34 478 513 476 514 0.93 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF790-201 - 636 2.1e-13 50.1 74.0 9 10 8.8e-06 0.0075 16.4 3.3 6 34 506 541 505 544 0.94 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF790-201 - 636 2.1e-13 50.1 74.0 10 10 4.4 3.8e+03 -1.9 0.0 6 16 562 572 546 584 0.70 Zinc ribbon domain zf-trcl PF13451.6 48 ZNF790-201 - 636 4e-10 39.4 59.2 1 12 0.024 20 5.2 0.2 3 14 224 235 222 237 0.90 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF790-201 - 636 4e-10 39.4 59.2 2 12 0.00041 0.35 10.8 0.4 3 17 252 266 250 268 0.88 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF790-201 - 636 4e-10 39.4 59.2 3 12 1.3 1.1e+03 -0.4 7.9 3 46 280 322 278 324 0.66 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF790-201 - 636 4e-10 39.4 59.2 4 12 0.025 21 5.1 0.1 3 15 336 348 334 349 0.89 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF790-201 - 636 4e-10 39.4 59.2 5 12 0.075 64 3.6 0.3 4 15 365 376 363 378 0.85 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF790-201 - 636 4e-10 39.4 59.2 6 12 0.008 6.8 6.7 0.0 3 18 392 407 391 411 0.91 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF790-201 - 636 4e-10 39.4 59.2 7 12 0.00079 0.67 9.9 0.1 3 17 420 434 419 440 0.90 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF790-201 - 636 4e-10 39.4 59.2 8 12 0.03 26 4.8 0.2 3 15 448 460 446 464 0.86 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF790-201 - 636 4e-10 39.4 59.2 9 12 0.086 74 3.4 0.4 4 14 477 487 475 489 0.86 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF790-201 - 636 4e-10 39.4 59.2 10 12 0.016 14 5.7 0.0 4 17 505 518 503 521 0.86 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF790-201 - 636 4e-10 39.4 59.2 11 12 0.00028 0.24 11.3 0.4 4 18 533 547 531 568 0.82 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF790-201 - 636 4e-10 39.4 59.2 12 12 0.57 4.9e+02 0.7 0.1 22 37 575 590 563 591 0.84 Probable zinc-ribbon domain zf_UBZ PF18439.1 32 ZNF790-201 - 636 9.8e-10 37.9 54.9 1 13 7.1 6.1e+03 -3.1 0.0 7 15 202 210 201 212 0.80 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF790-201 - 636 9.8e-10 37.9 54.9 2 13 0.00092 0.78 9.4 0.1 2 15 225 238 224 245 0.82 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF790-201 - 636 9.8e-10 37.9 54.9 3 13 0.03 26 4.5 0.1 3 15 254 266 252 273 0.79 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF790-201 - 636 9.8e-10 37.9 54.9 4 13 0.0028 2.4 7.9 0.7 2 21 281 301 280 301 0.84 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF790-201 - 636 9.8e-10 37.9 54.9 5 13 0.15 1.3e+02 2.3 0.3 3 14 310 321 308 329 0.82 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF790-201 - 636 9.8e-10 37.9 54.9 6 13 0.022 18 5.0 0.3 3 15 338 350 336 357 0.74 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF790-201 - 636 9.8e-10 37.9 54.9 7 13 0.039 33 4.2 0.3 2 20 365 384 364 385 0.74 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF790-201 - 636 9.8e-10 37.9 54.9 8 13 0.022 19 5.0 0.1 3 11 394 402 392 413 0.80 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF790-201 - 636 9.8e-10 37.9 54.9 9 13 0.019 16 5.2 0.1 3 13 422 432 420 441 0.81 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF790-201 - 636 9.8e-10 37.9 54.9 10 13 0.00098 0.84 9.3 0.4 2 21 449 469 448 469 0.85 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF790-201 - 636 9.8e-10 37.9 54.9 11 13 0.01 8.9 6.0 0.2 2 12 477 487 476 497 0.80 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF790-201 - 636 9.8e-10 37.9 54.9 12 13 0.0091 7.8 6.2 0.1 3 13 506 516 504 525 0.79 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF790-201 - 636 9.8e-10 37.9 54.9 13 13 0.004 3.4 7.3 0.1 2 12 533 543 532 553 0.83 Ubiquitin-Binding Zinc Finger XPA_N PF01286.18 32 ZNF790-201 - 636 1.6e-08 34.4 54.4 1 13 6.4 5.5e+03 -2.5 0.0 6 12 202 208 201 209 0.85 XPA protein N-terminal XPA_N PF01286.18 32 ZNF790-201 - 636 1.6e-08 34.4 54.4 2 13 0.022 19 5.4 0.3 3 11 227 235 226 239 0.90 XPA protein N-terminal XPA_N PF01286.18 32 ZNF790-201 - 636 1.6e-08 34.4 54.4 3 13 0.052 44 4.2 0.3 3 11 255 263 253 270 0.89 XPA protein N-terminal XPA_N PF01286.18 32 ZNF790-201 - 636 1.6e-08 34.4 54.4 4 13 0.051 44 4.2 1.7 3 11 283 291 282 295 0.91 XPA protein N-terminal XPA_N PF01286.18 32 ZNF790-201 - 636 1.6e-08 34.4 54.4 5 13 0.058 49 4.1 0.1 3 12 311 320 309 328 0.82 XPA protein N-terminal XPA_N PF01286.18 32 ZNF790-201 - 636 1.6e-08 34.4 54.4 6 13 0.0082 7 6.8 0.1 3 12 339 348 337 356 0.87 XPA protein N-terminal XPA_N PF01286.18 32 ZNF790-201 - 636 1.6e-08 34.4 54.4 7 13 0.01 8.8 6.5 0.1 3 11 367 375 365 387 0.89 XPA protein N-terminal XPA_N PF01286.18 32 ZNF790-201 - 636 1.6e-08 34.4 54.4 8 13 0.15 1.3e+02 2.8 0.1 3 10 395 402 393 407 0.86 XPA protein N-terminal XPA_N PF01286.18 32 ZNF790-201 - 636 1.6e-08 34.4 54.4 9 13 0.011 9.5 6.4 0.1 3 17 423 438 421 440 0.77 XPA protein N-terminal XPA_N PF01286.18 32 ZNF790-201 - 636 1.6e-08 34.4 54.4 10 13 0.0079 6.7 6.8 0.3 3 12 451 460 450 462 0.91 XPA protein N-terminal XPA_N PF01286.18 32 ZNF790-201 - 636 1.6e-08 34.4 54.4 11 13 0.03 26 5.0 0.7 3 11 479 487 478 489 0.92 XPA protein N-terminal XPA_N PF01286.18 32 ZNF790-201 - 636 1.6e-08 34.4 54.4 12 13 0.0035 3 8.0 0.1 3 12 507 516 505 524 0.85 XPA protein N-terminal XPA_N PF01286.18 32 ZNF790-201 - 636 1.6e-08 34.4 54.4 13 13 0.024 21 5.3 0.0 3 11 535 543 533 551 0.89 XPA protein N-terminal zf-C2H2_jaz PF12171.8 27 ZNF790-201 - 636 2.4e-07 30.9 62.3 1 13 0.008 6.8 7.1 0.0 2 21 226 245 225 246 0.86 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF790-201 - 636 2.4e-07 30.9 62.3 2 13 0.061 52 4.3 0.5 2 21 254 273 253 274 0.89 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF790-201 - 636 2.4e-07 30.9 62.3 3 13 0.052 44 4.5 0.3 2 20 282 300 281 302 0.77 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF790-201 - 636 2.4e-07 30.9 62.3 4 13 0.055 47 4.4 0.6 2 21 310 329 309 330 0.88 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF790-201 - 636 2.4e-07 30.9 62.3 5 13 0.0069 5.9 7.3 0.1 2 22 338 358 337 358 0.91 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF790-201 - 636 2.4e-07 30.9 62.3 6 13 0.0012 1 9.7 0.2 2 22 366 386 365 386 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF790-201 - 636 2.4e-07 30.9 62.3 7 13 8.3 7e+03 -2.5 0.2 2 20 394 412 393 414 0.70 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF790-201 - 636 2.4e-07 30.9 62.3 8 13 0.016 14 6.1 0.2 2 22 422 442 421 442 0.88 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF790-201 - 636 2.4e-07 30.9 62.3 9 13 0.0023 2 8.8 0.8 2 22 450 470 449 470 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF790-201 - 636 2.4e-07 30.9 62.3 10 13 0.0034 2.9 8.3 0.4 2 22 478 498 477 498 0.91 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF790-201 - 636 2.4e-07 30.9 62.3 11 13 0.091 77 3.7 0.0 2 20 506 524 505 526 0.74 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF790-201 - 636 2.4e-07 30.9 62.3 12 13 0.013 11 6.5 0.0 2 22 534 554 533 554 0.87 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF790-201 - 636 2.4e-07 30.9 62.3 13 13 3 2.5e+03 -1.1 1.5 10 22 597 609 597 609 0.92 Zinc-finger double-stranded RNA-binding # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF790-201.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF790-201.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF790-201.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF790-201.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF790-201.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:14:33 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF790-202.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF790-202.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF790-202.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF790-202.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF790-202.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:14:34 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF790-203.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF790-203.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF790-203.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF790-203.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF790-203.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:14:34 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF790-204.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF790-204.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF790-204.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF790-204.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF790-204.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:14:35 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF790-205.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF790-205.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF790-205.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF790-205.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF790-205.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:14:35 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZNF790-206 - 636 2.8e-91 296.2 107.5 1 14 0.46 3.9e+02 1.7 0.2 4 14 187 197 186 208 0.67 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF790-206 - 636 2.8e-91 296.2 107.5 2 14 2.1e-06 0.0018 18.6 1.8 8 25 219 236 217 236 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF790-206 - 636 2.8e-91 296.2 107.5 3 14 3e-10 2.6e-07 30.8 1.1 2 24 241 263 240 264 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF790-206 - 636 2.8e-91 296.2 107.5 4 14 4e-10 3.4e-07 30.4 1.7 2 25 269 292 268 293 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF790-206 - 636 2.8e-91 296.2 107.5 5 14 6.5e-13 5.6e-10 39.2 0.4 1 25 296 320 296 321 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF790-206 - 636 2.8e-91 296.2 107.5 6 14 4.2e-12 3.6e-09 36.6 1.8 1 26 324 349 324 349 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF790-206 - 636 2.8e-91 296.2 107.5 7 14 3e-10 2.6e-07 30.8 1.8 1 24 352 375 352 377 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF790-206 - 636 2.8e-91 296.2 107.5 8 14 1.5e-07 0.00013 22.2 0.3 1 24 380 403 380 404 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF790-206 - 636 2.8e-91 296.2 107.5 9 14 4.2e-11 3.6e-08 33.5 2.3 1 25 408 432 408 432 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF790-206 - 636 2.8e-91 296.2 107.5 10 14 1.2e-06 0.001 19.4 2.5 2 26 437 461 436 461 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF790-206 - 636 2.8e-91 296.2 107.5 11 14 6.8e-10 5.8e-07 29.7 2.0 2 24 465 487 464 489 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF790-206 - 636 2.8e-91 296.2 107.5 12 14 5.6e-12 4.8e-09 36.2 0.5 2 24 493 515 492 516 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF790-206 - 636 2.8e-91 296.2 107.5 13 14 2.1e-10 1.8e-07 31.2 0.3 2 24 521 543 520 544 0.97 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF790-206 - 636 2.8e-91 296.2 107.5 14 14 0.072 61 4.3 1.3 2 18 549 565 548 573 0.87 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZNF790-206 - 636 1.7e-50 166.8 112.4 1 14 2.8e-07 0.00024 21.4 0.8 1 23 226 248 226 248 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF790-206 - 636 1.7e-50 166.8 112.4 2 14 1.6e-07 0.00014 22.1 3.2 1 23 254 276 254 276 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF790-206 - 636 1.7e-50 166.8 112.4 3 14 1.6e-06 0.0013 19.0 1.3 1 23 282 304 282 304 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF790-206 - 636 1.7e-50 166.8 112.4 4 14 1.3e-08 1.1e-05 25.6 2.3 1 23 310 332 310 332 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF790-206 - 636 1.7e-50 166.8 112.4 5 14 7.6e-09 6.5e-06 26.3 1.4 1 23 338 360 338 360 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF790-206 - 636 1.7e-50 166.8 112.4 6 14 2.5e-07 0.00022 21.5 0.3 1 23 366 388 366 388 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF790-206 - 636 1.7e-50 166.8 112.4 7 14 9.2e-07 0.00078 19.8 0.9 1 23 394 416 394 416 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF790-206 - 636 1.7e-50 166.8 112.4 8 14 1.2e-05 0.01 16.2 0.3 1 23 422 444 422 444 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF790-206 - 636 1.7e-50 166.8 112.4 9 14 2.3e-05 0.019 15.4 1.9 1 23 450 472 450 472 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF790-206 - 636 1.7e-50 166.8 112.4 10 14 7e-08 5.9e-05 23.3 0.8 1 23 478 500 478 500 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF790-206 - 636 1.7e-50 166.8 112.4 11 14 0.00032 0.27 11.8 1.2 1 23 506 528 506 528 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF790-206 - 636 1.7e-50 166.8 112.4 12 14 7.1e-06 0.006 17.0 0.3 1 23 534 556 534 556 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF790-206 - 636 1.7e-50 166.8 112.4 13 14 0.27 2.3e+02 2.6 0.1 9 21 597 609 595 610 0.89 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF790-206 - 636 1.7e-50 166.8 112.4 14 14 4.9 4.2e+03 -1.4 0.1 8 17 624 633 623 634 0.86 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZNF790-206 - 636 9.2e-30 100.8 90.0 1 13 2.7e-05 0.023 15.5 0.7 1 23 226 248 226 249 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF790-206 - 636 9.2e-30 100.8 90.0 2 13 0.00016 0.14 13.1 2.7 1 23 254 276 254 277 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF790-206 - 636 9.2e-30 100.8 90.0 3 13 6.1e-06 0.0052 17.5 1.2 1 23 282 304 282 305 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF790-206 - 636 9.2e-30 100.8 90.0 4 13 8.3e-05 0.071 14.0 1.8 1 23 310 332 310 333 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF790-206 - 636 9.2e-30 100.8 90.0 5 13 5.2e-05 0.045 14.6 1.0 1 23 338 360 338 361 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF790-206 - 636 9.2e-30 100.8 90.0 6 13 0.0013 1.1 10.3 0.3 1 23 366 388 366 389 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF790-206 - 636 9.2e-30 100.8 90.0 7 13 0.008 6.9 7.8 1.0 1 23 394 416 394 417 0.83 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF790-206 - 636 9.2e-30 100.8 90.0 8 13 4.8e-05 0.041 14.7 0.4 1 23 422 444 422 445 0.90 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF790-206 - 636 9.2e-30 100.8 90.0 9 13 0.00015 0.13 13.2 1.5 1 23 450 472 450 473 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF790-206 - 636 9.2e-30 100.8 90.0 10 13 6.3e-06 0.0054 17.5 0.6 1 23 478 500 478 501 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF790-206 - 636 9.2e-30 100.8 90.0 11 13 0.0012 1 10.4 0.3 1 23 506 528 506 529 0.89 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF790-206 - 636 9.2e-30 100.8 90.0 12 13 0.0012 1 10.3 0.5 1 23 534 556 534 557 0.87 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF790-206 - 636 9.2e-30 100.8 90.0 13 13 4.5 3.9e+03 -0.8 0.3 17 24 567 574 561 574 0.79 C2H2-type zinc finger KRAB PF01352.27 42 ZNF790-206 - 636 4.9e-25 86.9 2.1 1 1 1.1e-27 9.5e-25 86.0 2.1 2 42 5 45 4 45 0.98 KRAB box zf-C2H2_6 PF13912.6 27 ZNF790-206 - 636 2.3e-18 65.7 94.5 1 13 4.4 3.8e+03 -1.9 0.1 5 11 201 207 201 207 0.91 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF790-206 - 636 2.3e-18 65.7 94.5 2 13 2.1e-07 0.00018 21.4 1.2 2 24 226 248 225 251 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF790-206 - 636 2.3e-18 65.7 94.5 3 13 0.063 54 3.9 1.0 2 12 254 264 254 276 0.91 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF790-206 - 636 2.3e-18 65.7 94.5 4 13 7.6e-05 0.065 13.3 1.6 2 24 282 304 281 307 0.87 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF790-206 - 636 2.3e-18 65.7 94.5 5 13 0.0091 7.8 6.6 0.9 2 13 310 321 310 333 0.77 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF790-206 - 636 2.3e-18 65.7 94.5 6 13 7.8e-05 0.067 13.2 1.8 2 22 338 358 338 362 0.88 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF790-206 - 636 2.3e-18 65.7 94.5 7 13 0.00015 0.12 12.4 0.3 2 20 366 384 365 386 0.84 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF790-206 - 636 2.3e-18 65.7 94.5 8 13 0.87 7.4e+02 0.3 1.2 2 11 394 403 394 403 0.89 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF790-206 - 636 2.3e-18 65.7 94.5 9 13 0.00073 0.63 10.1 1.2 2 11 422 431 422 432 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF790-206 - 636 2.3e-18 65.7 94.5 10 13 0.00031 0.27 11.3 0.7 2 11 450 459 449 470 0.95 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF790-206 - 636 2.3e-18 65.7 94.5 11 13 1.2e-05 0.01 15.8 1.3 2 24 478 500 477 503 0.92 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF790-206 - 636 2.3e-18 65.7 94.5 12 13 0.0097 8.3 6.5 0.1 2 11 506 515 506 528 0.88 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF790-206 - 636 2.3e-18 65.7 94.5 13 13 0.00011 0.096 12.7 0.5 2 24 534 556 534 558 0.88 C2H2-type zinc finger Zn-ribbon_8 PF09723.10 40 ZNF790-206 - 636 2.1e-13 50.1 74.0 1 10 0.00025 0.22 11.7 4.0 6 35 226 262 225 264 0.71 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF790-206 - 636 2.1e-13 50.1 74.0 2 10 0.00095 0.81 9.8 5.4 6 34 254 289 253 291 0.87 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF790-206 - 636 2.1e-13 50.1 74.0 3 10 0.00078 0.67 10.1 7.7 6 35 282 318 280 323 0.89 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF790-206 - 636 2.1e-13 50.1 74.0 4 10 5.5e-06 0.0047 17.0 2.9 6 35 338 374 337 377 0.91 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF790-206 - 636 2.1e-13 50.1 74.0 5 10 0.0021 1.8 8.8 5.4 6 35 394 430 393 432 0.89 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF790-206 - 636 2.1e-13 50.1 74.0 6 10 0.0002 0.17 12.0 6.3 6 34 422 457 420 459 0.85 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF790-206 - 636 2.1e-13 50.1 74.0 7 10 0.00059 0.51 10.5 7.7 6 35 450 486 449 489 0.87 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF790-206 - 636 2.1e-13 50.1 74.0 8 10 0.00038 0.32 11.1 7.0 6 34 478 513 476 514 0.93 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF790-206 - 636 2.1e-13 50.1 74.0 9 10 8.8e-06 0.0075 16.4 3.3 6 34 506 541 505 544 0.94 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF790-206 - 636 2.1e-13 50.1 74.0 10 10 4.4 3.8e+03 -1.9 0.0 6 16 562 572 546 584 0.70 Zinc ribbon domain zf-trcl PF13451.6 48 ZNF790-206 - 636 4e-10 39.4 59.2 1 12 0.024 20 5.2 0.2 3 14 224 235 222 237 0.90 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF790-206 - 636 4e-10 39.4 59.2 2 12 0.00041 0.35 10.8 0.4 3 17 252 266 250 268 0.88 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF790-206 - 636 4e-10 39.4 59.2 3 12 1.3 1.1e+03 -0.4 7.9 3 46 280 322 278 324 0.66 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF790-206 - 636 4e-10 39.4 59.2 4 12 0.025 21 5.1 0.1 3 15 336 348 334 349 0.89 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF790-206 - 636 4e-10 39.4 59.2 5 12 0.075 64 3.6 0.3 4 15 365 376 363 378 0.85 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF790-206 - 636 4e-10 39.4 59.2 6 12 0.008 6.8 6.7 0.0 3 18 392 407 391 411 0.91 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF790-206 - 636 4e-10 39.4 59.2 7 12 0.00079 0.67 9.9 0.1 3 17 420 434 419 440 0.90 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF790-206 - 636 4e-10 39.4 59.2 8 12 0.03 26 4.8 0.2 3 15 448 460 446 464 0.86 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF790-206 - 636 4e-10 39.4 59.2 9 12 0.086 74 3.4 0.4 4 14 477 487 475 489 0.86 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF790-206 - 636 4e-10 39.4 59.2 10 12 0.016 14 5.7 0.0 4 17 505 518 503 521 0.86 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF790-206 - 636 4e-10 39.4 59.2 11 12 0.00028 0.24 11.3 0.4 4 18 533 547 531 568 0.82 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF790-206 - 636 4e-10 39.4 59.2 12 12 0.57 4.9e+02 0.7 0.1 22 37 575 590 563 591 0.84 Probable zinc-ribbon domain zf_UBZ PF18439.1 32 ZNF790-206 - 636 9.8e-10 37.9 54.9 1 13 7.1 6.1e+03 -3.1 0.0 7 15 202 210 201 212 0.80 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF790-206 - 636 9.8e-10 37.9 54.9 2 13 0.00092 0.78 9.4 0.1 2 15 225 238 224 245 0.82 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF790-206 - 636 9.8e-10 37.9 54.9 3 13 0.03 26 4.5 0.1 3 15 254 266 252 273 0.79 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF790-206 - 636 9.8e-10 37.9 54.9 4 13 0.0028 2.4 7.9 0.7 2 21 281 301 280 301 0.84 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF790-206 - 636 9.8e-10 37.9 54.9 5 13 0.15 1.3e+02 2.3 0.3 3 14 310 321 308 329 0.82 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF790-206 - 636 9.8e-10 37.9 54.9 6 13 0.022 18 5.0 0.3 3 15 338 350 336 357 0.74 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF790-206 - 636 9.8e-10 37.9 54.9 7 13 0.039 33 4.2 0.3 2 20 365 384 364 385 0.74 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF790-206 - 636 9.8e-10 37.9 54.9 8 13 0.022 19 5.0 0.1 3 11 394 402 392 413 0.80 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF790-206 - 636 9.8e-10 37.9 54.9 9 13 0.019 16 5.2 0.1 3 13 422 432 420 441 0.81 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF790-206 - 636 9.8e-10 37.9 54.9 10 13 0.00098 0.84 9.3 0.4 2 21 449 469 448 469 0.85 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF790-206 - 636 9.8e-10 37.9 54.9 11 13 0.01 8.9 6.0 0.2 2 12 477 487 476 497 0.80 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF790-206 - 636 9.8e-10 37.9 54.9 12 13 0.0091 7.8 6.2 0.1 3 13 506 516 504 525 0.79 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF790-206 - 636 9.8e-10 37.9 54.9 13 13 0.004 3.4 7.3 0.1 2 12 533 543 532 553 0.83 Ubiquitin-Binding Zinc Finger XPA_N PF01286.18 32 ZNF790-206 - 636 1.6e-08 34.4 54.4 1 13 6.4 5.5e+03 -2.5 0.0 6 12 202 208 201 209 0.85 XPA protein N-terminal XPA_N PF01286.18 32 ZNF790-206 - 636 1.6e-08 34.4 54.4 2 13 0.022 19 5.4 0.3 3 11 227 235 226 239 0.90 XPA protein N-terminal XPA_N PF01286.18 32 ZNF790-206 - 636 1.6e-08 34.4 54.4 3 13 0.052 44 4.2 0.3 3 11 255 263 253 270 0.89 XPA protein N-terminal XPA_N PF01286.18 32 ZNF790-206 - 636 1.6e-08 34.4 54.4 4 13 0.051 44 4.2 1.7 3 11 283 291 282 295 0.91 XPA protein N-terminal XPA_N PF01286.18 32 ZNF790-206 - 636 1.6e-08 34.4 54.4 5 13 0.058 49 4.1 0.1 3 12 311 320 309 328 0.82 XPA protein N-terminal XPA_N PF01286.18 32 ZNF790-206 - 636 1.6e-08 34.4 54.4 6 13 0.0082 7 6.8 0.1 3 12 339 348 337 356 0.87 XPA protein N-terminal XPA_N PF01286.18 32 ZNF790-206 - 636 1.6e-08 34.4 54.4 7 13 0.01 8.8 6.5 0.1 3 11 367 375 365 387 0.89 XPA protein N-terminal XPA_N PF01286.18 32 ZNF790-206 - 636 1.6e-08 34.4 54.4 8 13 0.15 1.3e+02 2.8 0.1 3 10 395 402 393 407 0.86 XPA protein N-terminal XPA_N PF01286.18 32 ZNF790-206 - 636 1.6e-08 34.4 54.4 9 13 0.011 9.5 6.4 0.1 3 17 423 438 421 440 0.77 XPA protein N-terminal XPA_N PF01286.18 32 ZNF790-206 - 636 1.6e-08 34.4 54.4 10 13 0.0079 6.7 6.8 0.3 3 12 451 460 450 462 0.91 XPA protein N-terminal XPA_N PF01286.18 32 ZNF790-206 - 636 1.6e-08 34.4 54.4 11 13 0.03 26 5.0 0.7 3 11 479 487 478 489 0.92 XPA protein N-terminal XPA_N PF01286.18 32 ZNF790-206 - 636 1.6e-08 34.4 54.4 12 13 0.0035 3 8.0 0.1 3 12 507 516 505 524 0.85 XPA protein N-terminal XPA_N PF01286.18 32 ZNF790-206 - 636 1.6e-08 34.4 54.4 13 13 0.024 21 5.3 0.0 3 11 535 543 533 551 0.89 XPA protein N-terminal zf-C2H2_jaz PF12171.8 27 ZNF790-206 - 636 2.4e-07 30.9 62.3 1 13 0.008 6.8 7.1 0.0 2 21 226 245 225 246 0.86 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF790-206 - 636 2.4e-07 30.9 62.3 2 13 0.061 52 4.3 0.5 2 21 254 273 253 274 0.89 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF790-206 - 636 2.4e-07 30.9 62.3 3 13 0.052 44 4.5 0.3 2 20 282 300 281 302 0.77 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF790-206 - 636 2.4e-07 30.9 62.3 4 13 0.055 47 4.4 0.6 2 21 310 329 309 330 0.88 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF790-206 - 636 2.4e-07 30.9 62.3 5 13 0.0069 5.9 7.3 0.1 2 22 338 358 337 358 0.91 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF790-206 - 636 2.4e-07 30.9 62.3 6 13 0.0012 1 9.7 0.2 2 22 366 386 365 386 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF790-206 - 636 2.4e-07 30.9 62.3 7 13 8.3 7e+03 -2.5 0.2 2 20 394 412 393 414 0.70 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF790-206 - 636 2.4e-07 30.9 62.3 8 13 0.016 14 6.1 0.2 2 22 422 442 421 442 0.88 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF790-206 - 636 2.4e-07 30.9 62.3 9 13 0.0023 2 8.8 0.8 2 22 450 470 449 470 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF790-206 - 636 2.4e-07 30.9 62.3 10 13 0.0034 2.9 8.3 0.4 2 22 478 498 477 498 0.91 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF790-206 - 636 2.4e-07 30.9 62.3 11 13 0.091 77 3.7 0.0 2 20 506 524 505 526 0.74 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF790-206 - 636 2.4e-07 30.9 62.3 12 13 0.013 11 6.5 0.0 2 22 534 554 533 554 0.87 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF790-206 - 636 2.4e-07 30.9 62.3 13 13 3 2.5e+03 -1.1 1.5 10 22 597 609 597 609 0.92 Zinc-finger double-stranded RNA-binding # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF790-206.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF790-206.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF790-206.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF790-206.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF790-206.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:14:35 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZNF790-207 - 636 2.8e-91 296.2 107.5 1 14 0.46 3.9e+02 1.7 0.2 4 14 187 197 186 208 0.67 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF790-207 - 636 2.8e-91 296.2 107.5 2 14 2.1e-06 0.0018 18.6 1.8 8 25 219 236 217 236 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF790-207 - 636 2.8e-91 296.2 107.5 3 14 3e-10 2.6e-07 30.8 1.1 2 24 241 263 240 264 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF790-207 - 636 2.8e-91 296.2 107.5 4 14 4e-10 3.4e-07 30.4 1.7 2 25 269 292 268 293 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF790-207 - 636 2.8e-91 296.2 107.5 5 14 6.5e-13 5.6e-10 39.2 0.4 1 25 296 320 296 321 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF790-207 - 636 2.8e-91 296.2 107.5 6 14 4.2e-12 3.6e-09 36.6 1.8 1 26 324 349 324 349 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF790-207 - 636 2.8e-91 296.2 107.5 7 14 3e-10 2.6e-07 30.8 1.8 1 24 352 375 352 377 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF790-207 - 636 2.8e-91 296.2 107.5 8 14 1.5e-07 0.00013 22.2 0.3 1 24 380 403 380 404 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF790-207 - 636 2.8e-91 296.2 107.5 9 14 4.2e-11 3.6e-08 33.5 2.3 1 25 408 432 408 432 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF790-207 - 636 2.8e-91 296.2 107.5 10 14 1.2e-06 0.001 19.4 2.5 2 26 437 461 436 461 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF790-207 - 636 2.8e-91 296.2 107.5 11 14 6.8e-10 5.8e-07 29.7 2.0 2 24 465 487 464 489 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF790-207 - 636 2.8e-91 296.2 107.5 12 14 5.6e-12 4.8e-09 36.2 0.5 2 24 493 515 492 516 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF790-207 - 636 2.8e-91 296.2 107.5 13 14 2.1e-10 1.8e-07 31.2 0.3 2 24 521 543 520 544 0.97 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF790-207 - 636 2.8e-91 296.2 107.5 14 14 0.072 61 4.3 1.3 2 18 549 565 548 573 0.87 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZNF790-207 - 636 1.7e-50 166.8 112.4 1 14 2.8e-07 0.00024 21.4 0.8 1 23 226 248 226 248 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF790-207 - 636 1.7e-50 166.8 112.4 2 14 1.6e-07 0.00014 22.1 3.2 1 23 254 276 254 276 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF790-207 - 636 1.7e-50 166.8 112.4 3 14 1.6e-06 0.0013 19.0 1.3 1 23 282 304 282 304 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF790-207 - 636 1.7e-50 166.8 112.4 4 14 1.3e-08 1.1e-05 25.6 2.3 1 23 310 332 310 332 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF790-207 - 636 1.7e-50 166.8 112.4 5 14 7.6e-09 6.5e-06 26.3 1.4 1 23 338 360 338 360 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF790-207 - 636 1.7e-50 166.8 112.4 6 14 2.5e-07 0.00022 21.5 0.3 1 23 366 388 366 388 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF790-207 - 636 1.7e-50 166.8 112.4 7 14 9.2e-07 0.00078 19.8 0.9 1 23 394 416 394 416 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF790-207 - 636 1.7e-50 166.8 112.4 8 14 1.2e-05 0.01 16.2 0.3 1 23 422 444 422 444 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF790-207 - 636 1.7e-50 166.8 112.4 9 14 2.3e-05 0.019 15.4 1.9 1 23 450 472 450 472 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF790-207 - 636 1.7e-50 166.8 112.4 10 14 7e-08 5.9e-05 23.3 0.8 1 23 478 500 478 500 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF790-207 - 636 1.7e-50 166.8 112.4 11 14 0.00032 0.27 11.8 1.2 1 23 506 528 506 528 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF790-207 - 636 1.7e-50 166.8 112.4 12 14 7.1e-06 0.006 17.0 0.3 1 23 534 556 534 556 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF790-207 - 636 1.7e-50 166.8 112.4 13 14 0.27 2.3e+02 2.6 0.1 9 21 597 609 595 610 0.89 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF790-207 - 636 1.7e-50 166.8 112.4 14 14 4.9 4.2e+03 -1.4 0.1 8 17 624 633 623 634 0.86 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZNF790-207 - 636 9.2e-30 100.8 90.0 1 13 2.7e-05 0.023 15.5 0.7 1 23 226 248 226 249 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF790-207 - 636 9.2e-30 100.8 90.0 2 13 0.00016 0.14 13.1 2.7 1 23 254 276 254 277 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF790-207 - 636 9.2e-30 100.8 90.0 3 13 6.1e-06 0.0052 17.5 1.2 1 23 282 304 282 305 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF790-207 - 636 9.2e-30 100.8 90.0 4 13 8.3e-05 0.071 14.0 1.8 1 23 310 332 310 333 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF790-207 - 636 9.2e-30 100.8 90.0 5 13 5.2e-05 0.045 14.6 1.0 1 23 338 360 338 361 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF790-207 - 636 9.2e-30 100.8 90.0 6 13 0.0013 1.1 10.3 0.3 1 23 366 388 366 389 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF790-207 - 636 9.2e-30 100.8 90.0 7 13 0.008 6.9 7.8 1.0 1 23 394 416 394 417 0.83 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF790-207 - 636 9.2e-30 100.8 90.0 8 13 4.8e-05 0.041 14.7 0.4 1 23 422 444 422 445 0.90 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF790-207 - 636 9.2e-30 100.8 90.0 9 13 0.00015 0.13 13.2 1.5 1 23 450 472 450 473 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF790-207 - 636 9.2e-30 100.8 90.0 10 13 6.3e-06 0.0054 17.5 0.6 1 23 478 500 478 501 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF790-207 - 636 9.2e-30 100.8 90.0 11 13 0.0012 1 10.4 0.3 1 23 506 528 506 529 0.89 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF790-207 - 636 9.2e-30 100.8 90.0 12 13 0.0012 1 10.3 0.5 1 23 534 556 534 557 0.87 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF790-207 - 636 9.2e-30 100.8 90.0 13 13 4.5 3.9e+03 -0.8 0.3 17 24 567 574 561 574 0.79 C2H2-type zinc finger KRAB PF01352.27 42 ZNF790-207 - 636 4.9e-25 86.9 2.1 1 1 1.1e-27 9.5e-25 86.0 2.1 2 42 5 45 4 45 0.98 KRAB box zf-C2H2_6 PF13912.6 27 ZNF790-207 - 636 2.3e-18 65.7 94.5 1 13 4.4 3.8e+03 -1.9 0.1 5 11 201 207 201 207 0.91 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF790-207 - 636 2.3e-18 65.7 94.5 2 13 2.1e-07 0.00018 21.4 1.2 2 24 226 248 225 251 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF790-207 - 636 2.3e-18 65.7 94.5 3 13 0.063 54 3.9 1.0 2 12 254 264 254 276 0.91 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF790-207 - 636 2.3e-18 65.7 94.5 4 13 7.6e-05 0.065 13.3 1.6 2 24 282 304 281 307 0.87 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF790-207 - 636 2.3e-18 65.7 94.5 5 13 0.0091 7.8 6.6 0.9 2 13 310 321 310 333 0.77 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF790-207 - 636 2.3e-18 65.7 94.5 6 13 7.8e-05 0.067 13.2 1.8 2 22 338 358 338 362 0.88 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF790-207 - 636 2.3e-18 65.7 94.5 7 13 0.00015 0.12 12.4 0.3 2 20 366 384 365 386 0.84 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF790-207 - 636 2.3e-18 65.7 94.5 8 13 0.87 7.4e+02 0.3 1.2 2 11 394 403 394 403 0.89 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF790-207 - 636 2.3e-18 65.7 94.5 9 13 0.00073 0.63 10.1 1.2 2 11 422 431 422 432 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF790-207 - 636 2.3e-18 65.7 94.5 10 13 0.00031 0.27 11.3 0.7 2 11 450 459 449 470 0.95 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF790-207 - 636 2.3e-18 65.7 94.5 11 13 1.2e-05 0.01 15.8 1.3 2 24 478 500 477 503 0.92 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF790-207 - 636 2.3e-18 65.7 94.5 12 13 0.0097 8.3 6.5 0.1 2 11 506 515 506 528 0.88 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF790-207 - 636 2.3e-18 65.7 94.5 13 13 0.00011 0.096 12.7 0.5 2 24 534 556 534 558 0.88 C2H2-type zinc finger Zn-ribbon_8 PF09723.10 40 ZNF790-207 - 636 2.1e-13 50.1 74.0 1 10 0.00025 0.22 11.7 4.0 6 35 226 262 225 264 0.71 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF790-207 - 636 2.1e-13 50.1 74.0 2 10 0.00095 0.81 9.8 5.4 6 34 254 289 253 291 0.87 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF790-207 - 636 2.1e-13 50.1 74.0 3 10 0.00078 0.67 10.1 7.7 6 35 282 318 280 323 0.89 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF790-207 - 636 2.1e-13 50.1 74.0 4 10 5.5e-06 0.0047 17.0 2.9 6 35 338 374 337 377 0.91 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF790-207 - 636 2.1e-13 50.1 74.0 5 10 0.0021 1.8 8.8 5.4 6 35 394 430 393 432 0.89 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF790-207 - 636 2.1e-13 50.1 74.0 6 10 0.0002 0.17 12.0 6.3 6 34 422 457 420 459 0.85 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF790-207 - 636 2.1e-13 50.1 74.0 7 10 0.00059 0.51 10.5 7.7 6 35 450 486 449 489 0.87 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF790-207 - 636 2.1e-13 50.1 74.0 8 10 0.00038 0.32 11.1 7.0 6 34 478 513 476 514 0.93 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF790-207 - 636 2.1e-13 50.1 74.0 9 10 8.8e-06 0.0075 16.4 3.3 6 34 506 541 505 544 0.94 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF790-207 - 636 2.1e-13 50.1 74.0 10 10 4.4 3.8e+03 -1.9 0.0 6 16 562 572 546 584 0.70 Zinc ribbon domain zf-trcl PF13451.6 48 ZNF790-207 - 636 4e-10 39.4 59.2 1 12 0.024 20 5.2 0.2 3 14 224 235 222 237 0.90 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF790-207 - 636 4e-10 39.4 59.2 2 12 0.00041 0.35 10.8 0.4 3 17 252 266 250 268 0.88 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF790-207 - 636 4e-10 39.4 59.2 3 12 1.3 1.1e+03 -0.4 7.9 3 46 280 322 278 324 0.66 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF790-207 - 636 4e-10 39.4 59.2 4 12 0.025 21 5.1 0.1 3 15 336 348 334 349 0.89 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF790-207 - 636 4e-10 39.4 59.2 5 12 0.075 64 3.6 0.3 4 15 365 376 363 378 0.85 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF790-207 - 636 4e-10 39.4 59.2 6 12 0.008 6.8 6.7 0.0 3 18 392 407 391 411 0.91 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF790-207 - 636 4e-10 39.4 59.2 7 12 0.00079 0.67 9.9 0.1 3 17 420 434 419 440 0.90 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF790-207 - 636 4e-10 39.4 59.2 8 12 0.03 26 4.8 0.2 3 15 448 460 446 464 0.86 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF790-207 - 636 4e-10 39.4 59.2 9 12 0.086 74 3.4 0.4 4 14 477 487 475 489 0.86 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF790-207 - 636 4e-10 39.4 59.2 10 12 0.016 14 5.7 0.0 4 17 505 518 503 521 0.86 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF790-207 - 636 4e-10 39.4 59.2 11 12 0.00028 0.24 11.3 0.4 4 18 533 547 531 568 0.82 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF790-207 - 636 4e-10 39.4 59.2 12 12 0.57 4.9e+02 0.7 0.1 22 37 575 590 563 591 0.84 Probable zinc-ribbon domain zf_UBZ PF18439.1 32 ZNF790-207 - 636 9.8e-10 37.9 54.9 1 13 7.1 6.1e+03 -3.1 0.0 7 15 202 210 201 212 0.80 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF790-207 - 636 9.8e-10 37.9 54.9 2 13 0.00092 0.78 9.4 0.1 2 15 225 238 224 245 0.82 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF790-207 - 636 9.8e-10 37.9 54.9 3 13 0.03 26 4.5 0.1 3 15 254 266 252 273 0.79 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF790-207 - 636 9.8e-10 37.9 54.9 4 13 0.0028 2.4 7.9 0.7 2 21 281 301 280 301 0.84 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF790-207 - 636 9.8e-10 37.9 54.9 5 13 0.15 1.3e+02 2.3 0.3 3 14 310 321 308 329 0.82 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF790-207 - 636 9.8e-10 37.9 54.9 6 13 0.022 18 5.0 0.3 3 15 338 350 336 357 0.74 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF790-207 - 636 9.8e-10 37.9 54.9 7 13 0.039 33 4.2 0.3 2 20 365 384 364 385 0.74 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF790-207 - 636 9.8e-10 37.9 54.9 8 13 0.022 19 5.0 0.1 3 11 394 402 392 413 0.80 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF790-207 - 636 9.8e-10 37.9 54.9 9 13 0.019 16 5.2 0.1 3 13 422 432 420 441 0.81 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF790-207 - 636 9.8e-10 37.9 54.9 10 13 0.00098 0.84 9.3 0.4 2 21 449 469 448 469 0.85 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF790-207 - 636 9.8e-10 37.9 54.9 11 13 0.01 8.9 6.0 0.2 2 12 477 487 476 497 0.80 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF790-207 - 636 9.8e-10 37.9 54.9 12 13 0.0091 7.8 6.2 0.1 3 13 506 516 504 525 0.79 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF790-207 - 636 9.8e-10 37.9 54.9 13 13 0.004 3.4 7.3 0.1 2 12 533 543 532 553 0.83 Ubiquitin-Binding Zinc Finger XPA_N PF01286.18 32 ZNF790-207 - 636 1.6e-08 34.4 54.4 1 13 6.4 5.5e+03 -2.5 0.0 6 12 202 208 201 209 0.85 XPA protein N-terminal XPA_N PF01286.18 32 ZNF790-207 - 636 1.6e-08 34.4 54.4 2 13 0.022 19 5.4 0.3 3 11 227 235 226 239 0.90 XPA protein N-terminal XPA_N PF01286.18 32 ZNF790-207 - 636 1.6e-08 34.4 54.4 3 13 0.052 44 4.2 0.3 3 11 255 263 253 270 0.89 XPA protein N-terminal XPA_N PF01286.18 32 ZNF790-207 - 636 1.6e-08 34.4 54.4 4 13 0.051 44 4.2 1.7 3 11 283 291 282 295 0.91 XPA protein N-terminal XPA_N PF01286.18 32 ZNF790-207 - 636 1.6e-08 34.4 54.4 5 13 0.058 49 4.1 0.1 3 12 311 320 309 328 0.82 XPA protein N-terminal XPA_N PF01286.18 32 ZNF790-207 - 636 1.6e-08 34.4 54.4 6 13 0.0082 7 6.8 0.1 3 12 339 348 337 356 0.87 XPA protein N-terminal XPA_N PF01286.18 32 ZNF790-207 - 636 1.6e-08 34.4 54.4 7 13 0.01 8.8 6.5 0.1 3 11 367 375 365 387 0.89 XPA protein N-terminal XPA_N PF01286.18 32 ZNF790-207 - 636 1.6e-08 34.4 54.4 8 13 0.15 1.3e+02 2.8 0.1 3 10 395 402 393 407 0.86 XPA protein N-terminal XPA_N PF01286.18 32 ZNF790-207 - 636 1.6e-08 34.4 54.4 9 13 0.011 9.5 6.4 0.1 3 17 423 438 421 440 0.77 XPA protein N-terminal XPA_N PF01286.18 32 ZNF790-207 - 636 1.6e-08 34.4 54.4 10 13 0.0079 6.7 6.8 0.3 3 12 451 460 450 462 0.91 XPA protein N-terminal XPA_N PF01286.18 32 ZNF790-207 - 636 1.6e-08 34.4 54.4 11 13 0.03 26 5.0 0.7 3 11 479 487 478 489 0.92 XPA protein N-terminal XPA_N PF01286.18 32 ZNF790-207 - 636 1.6e-08 34.4 54.4 12 13 0.0035 3 8.0 0.1 3 12 507 516 505 524 0.85 XPA protein N-terminal XPA_N PF01286.18 32 ZNF790-207 - 636 1.6e-08 34.4 54.4 13 13 0.024 21 5.3 0.0 3 11 535 543 533 551 0.89 XPA protein N-terminal zf-C2H2_jaz PF12171.8 27 ZNF790-207 - 636 2.4e-07 30.9 62.3 1 13 0.008 6.8 7.1 0.0 2 21 226 245 225 246 0.86 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF790-207 - 636 2.4e-07 30.9 62.3 2 13 0.061 52 4.3 0.5 2 21 254 273 253 274 0.89 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF790-207 - 636 2.4e-07 30.9 62.3 3 13 0.052 44 4.5 0.3 2 20 282 300 281 302 0.77 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF790-207 - 636 2.4e-07 30.9 62.3 4 13 0.055 47 4.4 0.6 2 21 310 329 309 330 0.88 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF790-207 - 636 2.4e-07 30.9 62.3 5 13 0.0069 5.9 7.3 0.1 2 22 338 358 337 358 0.91 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF790-207 - 636 2.4e-07 30.9 62.3 6 13 0.0012 1 9.7 0.2 2 22 366 386 365 386 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF790-207 - 636 2.4e-07 30.9 62.3 7 13 8.3 7e+03 -2.5 0.2 2 20 394 412 393 414 0.70 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF790-207 - 636 2.4e-07 30.9 62.3 8 13 0.016 14 6.1 0.2 2 22 422 442 421 442 0.88 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF790-207 - 636 2.4e-07 30.9 62.3 9 13 0.0023 2 8.8 0.8 2 22 450 470 449 470 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF790-207 - 636 2.4e-07 30.9 62.3 10 13 0.0034 2.9 8.3 0.4 2 22 478 498 477 498 0.91 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF790-207 - 636 2.4e-07 30.9 62.3 11 13 0.091 77 3.7 0.0 2 20 506 524 505 526 0.74 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF790-207 - 636 2.4e-07 30.9 62.3 12 13 0.013 11 6.5 0.0 2 22 534 554 533 554 0.87 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF790-207 - 636 2.4e-07 30.9 62.3 13 13 3 2.5e+03 -1.1 1.5 10 22 597 609 597 609 0.92 Zinc-finger double-stranded RNA-binding # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF790-207.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF790-207.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF790-207.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF790-207.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF790-207.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:14:36 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZNF790-208 - 636 2.8e-91 296.2 107.5 1 14 0.46 3.9e+02 1.7 0.2 4 14 187 197 186 208 0.67 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF790-208 - 636 2.8e-91 296.2 107.5 2 14 2.1e-06 0.0018 18.6 1.8 8 25 219 236 217 236 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF790-208 - 636 2.8e-91 296.2 107.5 3 14 3e-10 2.6e-07 30.8 1.1 2 24 241 263 240 264 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF790-208 - 636 2.8e-91 296.2 107.5 4 14 4e-10 3.4e-07 30.4 1.7 2 25 269 292 268 293 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF790-208 - 636 2.8e-91 296.2 107.5 5 14 6.5e-13 5.6e-10 39.2 0.4 1 25 296 320 296 321 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF790-208 - 636 2.8e-91 296.2 107.5 6 14 4.2e-12 3.6e-09 36.6 1.8 1 26 324 349 324 349 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF790-208 - 636 2.8e-91 296.2 107.5 7 14 3e-10 2.6e-07 30.8 1.8 1 24 352 375 352 377 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF790-208 - 636 2.8e-91 296.2 107.5 8 14 1.5e-07 0.00013 22.2 0.3 1 24 380 403 380 404 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF790-208 - 636 2.8e-91 296.2 107.5 9 14 4.2e-11 3.6e-08 33.5 2.3 1 25 408 432 408 432 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF790-208 - 636 2.8e-91 296.2 107.5 10 14 1.2e-06 0.001 19.4 2.5 2 26 437 461 436 461 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF790-208 - 636 2.8e-91 296.2 107.5 11 14 6.8e-10 5.8e-07 29.7 2.0 2 24 465 487 464 489 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF790-208 - 636 2.8e-91 296.2 107.5 12 14 5.6e-12 4.8e-09 36.2 0.5 2 24 493 515 492 516 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF790-208 - 636 2.8e-91 296.2 107.5 13 14 2.1e-10 1.8e-07 31.2 0.3 2 24 521 543 520 544 0.97 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF790-208 - 636 2.8e-91 296.2 107.5 14 14 0.072 61 4.3 1.3 2 18 549 565 548 573 0.87 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZNF790-208 - 636 1.7e-50 166.8 112.4 1 14 2.8e-07 0.00024 21.4 0.8 1 23 226 248 226 248 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF790-208 - 636 1.7e-50 166.8 112.4 2 14 1.6e-07 0.00014 22.1 3.2 1 23 254 276 254 276 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF790-208 - 636 1.7e-50 166.8 112.4 3 14 1.6e-06 0.0013 19.0 1.3 1 23 282 304 282 304 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF790-208 - 636 1.7e-50 166.8 112.4 4 14 1.3e-08 1.1e-05 25.6 2.3 1 23 310 332 310 332 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF790-208 - 636 1.7e-50 166.8 112.4 5 14 7.6e-09 6.5e-06 26.3 1.4 1 23 338 360 338 360 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF790-208 - 636 1.7e-50 166.8 112.4 6 14 2.5e-07 0.00022 21.5 0.3 1 23 366 388 366 388 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF790-208 - 636 1.7e-50 166.8 112.4 7 14 9.2e-07 0.00078 19.8 0.9 1 23 394 416 394 416 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF790-208 - 636 1.7e-50 166.8 112.4 8 14 1.2e-05 0.01 16.2 0.3 1 23 422 444 422 444 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF790-208 - 636 1.7e-50 166.8 112.4 9 14 2.3e-05 0.019 15.4 1.9 1 23 450 472 450 472 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF790-208 - 636 1.7e-50 166.8 112.4 10 14 7e-08 5.9e-05 23.3 0.8 1 23 478 500 478 500 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF790-208 - 636 1.7e-50 166.8 112.4 11 14 0.00032 0.27 11.8 1.2 1 23 506 528 506 528 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF790-208 - 636 1.7e-50 166.8 112.4 12 14 7.1e-06 0.006 17.0 0.3 1 23 534 556 534 556 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF790-208 - 636 1.7e-50 166.8 112.4 13 14 0.27 2.3e+02 2.6 0.1 9 21 597 609 595 610 0.89 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF790-208 - 636 1.7e-50 166.8 112.4 14 14 4.9 4.2e+03 -1.4 0.1 8 17 624 633 623 634 0.86 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZNF790-208 - 636 9.2e-30 100.8 90.0 1 13 2.7e-05 0.023 15.5 0.7 1 23 226 248 226 249 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF790-208 - 636 9.2e-30 100.8 90.0 2 13 0.00016 0.14 13.1 2.7 1 23 254 276 254 277 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF790-208 - 636 9.2e-30 100.8 90.0 3 13 6.1e-06 0.0052 17.5 1.2 1 23 282 304 282 305 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF790-208 - 636 9.2e-30 100.8 90.0 4 13 8.3e-05 0.071 14.0 1.8 1 23 310 332 310 333 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF790-208 - 636 9.2e-30 100.8 90.0 5 13 5.2e-05 0.045 14.6 1.0 1 23 338 360 338 361 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF790-208 - 636 9.2e-30 100.8 90.0 6 13 0.0013 1.1 10.3 0.3 1 23 366 388 366 389 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF790-208 - 636 9.2e-30 100.8 90.0 7 13 0.008 6.9 7.8 1.0 1 23 394 416 394 417 0.83 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF790-208 - 636 9.2e-30 100.8 90.0 8 13 4.8e-05 0.041 14.7 0.4 1 23 422 444 422 445 0.90 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF790-208 - 636 9.2e-30 100.8 90.0 9 13 0.00015 0.13 13.2 1.5 1 23 450 472 450 473 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF790-208 - 636 9.2e-30 100.8 90.0 10 13 6.3e-06 0.0054 17.5 0.6 1 23 478 500 478 501 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF790-208 - 636 9.2e-30 100.8 90.0 11 13 0.0012 1 10.4 0.3 1 23 506 528 506 529 0.89 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF790-208 - 636 9.2e-30 100.8 90.0 12 13 0.0012 1 10.3 0.5 1 23 534 556 534 557 0.87 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF790-208 - 636 9.2e-30 100.8 90.0 13 13 4.5 3.9e+03 -0.8 0.3 17 24 567 574 561 574 0.79 C2H2-type zinc finger KRAB PF01352.27 42 ZNF790-208 - 636 4.9e-25 86.9 2.1 1 1 1.1e-27 9.5e-25 86.0 2.1 2 42 5 45 4 45 0.98 KRAB box zf-C2H2_6 PF13912.6 27 ZNF790-208 - 636 2.3e-18 65.7 94.5 1 13 4.4 3.8e+03 -1.9 0.1 5 11 201 207 201 207 0.91 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF790-208 - 636 2.3e-18 65.7 94.5 2 13 2.1e-07 0.00018 21.4 1.2 2 24 226 248 225 251 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF790-208 - 636 2.3e-18 65.7 94.5 3 13 0.063 54 3.9 1.0 2 12 254 264 254 276 0.91 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF790-208 - 636 2.3e-18 65.7 94.5 4 13 7.6e-05 0.065 13.3 1.6 2 24 282 304 281 307 0.87 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF790-208 - 636 2.3e-18 65.7 94.5 5 13 0.0091 7.8 6.6 0.9 2 13 310 321 310 333 0.77 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF790-208 - 636 2.3e-18 65.7 94.5 6 13 7.8e-05 0.067 13.2 1.8 2 22 338 358 338 362 0.88 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF790-208 - 636 2.3e-18 65.7 94.5 7 13 0.00015 0.12 12.4 0.3 2 20 366 384 365 386 0.84 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF790-208 - 636 2.3e-18 65.7 94.5 8 13 0.87 7.4e+02 0.3 1.2 2 11 394 403 394 403 0.89 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF790-208 - 636 2.3e-18 65.7 94.5 9 13 0.00073 0.63 10.1 1.2 2 11 422 431 422 432 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF790-208 - 636 2.3e-18 65.7 94.5 10 13 0.00031 0.27 11.3 0.7 2 11 450 459 449 470 0.95 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF790-208 - 636 2.3e-18 65.7 94.5 11 13 1.2e-05 0.01 15.8 1.3 2 24 478 500 477 503 0.92 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF790-208 - 636 2.3e-18 65.7 94.5 12 13 0.0097 8.3 6.5 0.1 2 11 506 515 506 528 0.88 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF790-208 - 636 2.3e-18 65.7 94.5 13 13 0.00011 0.096 12.7 0.5 2 24 534 556 534 558 0.88 C2H2-type zinc finger Zn-ribbon_8 PF09723.10 40 ZNF790-208 - 636 2.1e-13 50.1 74.0 1 10 0.00025 0.22 11.7 4.0 6 35 226 262 225 264 0.71 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF790-208 - 636 2.1e-13 50.1 74.0 2 10 0.00095 0.81 9.8 5.4 6 34 254 289 253 291 0.87 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF790-208 - 636 2.1e-13 50.1 74.0 3 10 0.00078 0.67 10.1 7.7 6 35 282 318 280 323 0.89 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF790-208 - 636 2.1e-13 50.1 74.0 4 10 5.5e-06 0.0047 17.0 2.9 6 35 338 374 337 377 0.91 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF790-208 - 636 2.1e-13 50.1 74.0 5 10 0.0021 1.8 8.8 5.4 6 35 394 430 393 432 0.89 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF790-208 - 636 2.1e-13 50.1 74.0 6 10 0.0002 0.17 12.0 6.3 6 34 422 457 420 459 0.85 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF790-208 - 636 2.1e-13 50.1 74.0 7 10 0.00059 0.51 10.5 7.7 6 35 450 486 449 489 0.87 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF790-208 - 636 2.1e-13 50.1 74.0 8 10 0.00038 0.32 11.1 7.0 6 34 478 513 476 514 0.93 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF790-208 - 636 2.1e-13 50.1 74.0 9 10 8.8e-06 0.0075 16.4 3.3 6 34 506 541 505 544 0.94 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF790-208 - 636 2.1e-13 50.1 74.0 10 10 4.4 3.8e+03 -1.9 0.0 6 16 562 572 546 584 0.70 Zinc ribbon domain zf-trcl PF13451.6 48 ZNF790-208 - 636 4e-10 39.4 59.2 1 12 0.024 20 5.2 0.2 3 14 224 235 222 237 0.90 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF790-208 - 636 4e-10 39.4 59.2 2 12 0.00041 0.35 10.8 0.4 3 17 252 266 250 268 0.88 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF790-208 - 636 4e-10 39.4 59.2 3 12 1.3 1.1e+03 -0.4 7.9 3 46 280 322 278 324 0.66 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF790-208 - 636 4e-10 39.4 59.2 4 12 0.025 21 5.1 0.1 3 15 336 348 334 349 0.89 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF790-208 - 636 4e-10 39.4 59.2 5 12 0.075 64 3.6 0.3 4 15 365 376 363 378 0.85 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF790-208 - 636 4e-10 39.4 59.2 6 12 0.008 6.8 6.7 0.0 3 18 392 407 391 411 0.91 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF790-208 - 636 4e-10 39.4 59.2 7 12 0.00079 0.67 9.9 0.1 3 17 420 434 419 440 0.90 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF790-208 - 636 4e-10 39.4 59.2 8 12 0.03 26 4.8 0.2 3 15 448 460 446 464 0.86 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF790-208 - 636 4e-10 39.4 59.2 9 12 0.086 74 3.4 0.4 4 14 477 487 475 489 0.86 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF790-208 - 636 4e-10 39.4 59.2 10 12 0.016 14 5.7 0.0 4 17 505 518 503 521 0.86 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF790-208 - 636 4e-10 39.4 59.2 11 12 0.00028 0.24 11.3 0.4 4 18 533 547 531 568 0.82 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF790-208 - 636 4e-10 39.4 59.2 12 12 0.57 4.9e+02 0.7 0.1 22 37 575 590 563 591 0.84 Probable zinc-ribbon domain zf_UBZ PF18439.1 32 ZNF790-208 - 636 9.8e-10 37.9 54.9 1 13 7.1 6.1e+03 -3.1 0.0 7 15 202 210 201 212 0.80 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF790-208 - 636 9.8e-10 37.9 54.9 2 13 0.00092 0.78 9.4 0.1 2 15 225 238 224 245 0.82 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF790-208 - 636 9.8e-10 37.9 54.9 3 13 0.03 26 4.5 0.1 3 15 254 266 252 273 0.79 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF790-208 - 636 9.8e-10 37.9 54.9 4 13 0.0028 2.4 7.9 0.7 2 21 281 301 280 301 0.84 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF790-208 - 636 9.8e-10 37.9 54.9 5 13 0.15 1.3e+02 2.3 0.3 3 14 310 321 308 329 0.82 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF790-208 - 636 9.8e-10 37.9 54.9 6 13 0.022 18 5.0 0.3 3 15 338 350 336 357 0.74 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF790-208 - 636 9.8e-10 37.9 54.9 7 13 0.039 33 4.2 0.3 2 20 365 384 364 385 0.74 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF790-208 - 636 9.8e-10 37.9 54.9 8 13 0.022 19 5.0 0.1 3 11 394 402 392 413 0.80 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF790-208 - 636 9.8e-10 37.9 54.9 9 13 0.019 16 5.2 0.1 3 13 422 432 420 441 0.81 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF790-208 - 636 9.8e-10 37.9 54.9 10 13 0.00098 0.84 9.3 0.4 2 21 449 469 448 469 0.85 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF790-208 - 636 9.8e-10 37.9 54.9 11 13 0.01 8.9 6.0 0.2 2 12 477 487 476 497 0.80 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF790-208 - 636 9.8e-10 37.9 54.9 12 13 0.0091 7.8 6.2 0.1 3 13 506 516 504 525 0.79 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF790-208 - 636 9.8e-10 37.9 54.9 13 13 0.004 3.4 7.3 0.1 2 12 533 543 532 553 0.83 Ubiquitin-Binding Zinc Finger XPA_N PF01286.18 32 ZNF790-208 - 636 1.6e-08 34.4 54.4 1 13 6.4 5.5e+03 -2.5 0.0 6 12 202 208 201 209 0.85 XPA protein N-terminal XPA_N PF01286.18 32 ZNF790-208 - 636 1.6e-08 34.4 54.4 2 13 0.022 19 5.4 0.3 3 11 227 235 226 239 0.90 XPA protein N-terminal XPA_N PF01286.18 32 ZNF790-208 - 636 1.6e-08 34.4 54.4 3 13 0.052 44 4.2 0.3 3 11 255 263 253 270 0.89 XPA protein N-terminal XPA_N PF01286.18 32 ZNF790-208 - 636 1.6e-08 34.4 54.4 4 13 0.051 44 4.2 1.7 3 11 283 291 282 295 0.91 XPA protein N-terminal XPA_N PF01286.18 32 ZNF790-208 - 636 1.6e-08 34.4 54.4 5 13 0.058 49 4.1 0.1 3 12 311 320 309 328 0.82 XPA protein N-terminal XPA_N PF01286.18 32 ZNF790-208 - 636 1.6e-08 34.4 54.4 6 13 0.0082 7 6.8 0.1 3 12 339 348 337 356 0.87 XPA protein N-terminal XPA_N PF01286.18 32 ZNF790-208 - 636 1.6e-08 34.4 54.4 7 13 0.01 8.8 6.5 0.1 3 11 367 375 365 387 0.89 XPA protein N-terminal XPA_N PF01286.18 32 ZNF790-208 - 636 1.6e-08 34.4 54.4 8 13 0.15 1.3e+02 2.8 0.1 3 10 395 402 393 407 0.86 XPA protein N-terminal XPA_N PF01286.18 32 ZNF790-208 - 636 1.6e-08 34.4 54.4 9 13 0.011 9.5 6.4 0.1 3 17 423 438 421 440 0.77 XPA protein N-terminal XPA_N PF01286.18 32 ZNF790-208 - 636 1.6e-08 34.4 54.4 10 13 0.0079 6.7 6.8 0.3 3 12 451 460 450 462 0.91 XPA protein N-terminal XPA_N PF01286.18 32 ZNF790-208 - 636 1.6e-08 34.4 54.4 11 13 0.03 26 5.0 0.7 3 11 479 487 478 489 0.92 XPA protein N-terminal XPA_N PF01286.18 32 ZNF790-208 - 636 1.6e-08 34.4 54.4 12 13 0.0035 3 8.0 0.1 3 12 507 516 505 524 0.85 XPA protein N-terminal XPA_N PF01286.18 32 ZNF790-208 - 636 1.6e-08 34.4 54.4 13 13 0.024 21 5.3 0.0 3 11 535 543 533 551 0.89 XPA protein N-terminal zf-C2H2_jaz PF12171.8 27 ZNF790-208 - 636 2.4e-07 30.9 62.3 1 13 0.008 6.8 7.1 0.0 2 21 226 245 225 246 0.86 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF790-208 - 636 2.4e-07 30.9 62.3 2 13 0.061 52 4.3 0.5 2 21 254 273 253 274 0.89 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF790-208 - 636 2.4e-07 30.9 62.3 3 13 0.052 44 4.5 0.3 2 20 282 300 281 302 0.77 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF790-208 - 636 2.4e-07 30.9 62.3 4 13 0.055 47 4.4 0.6 2 21 310 329 309 330 0.88 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF790-208 - 636 2.4e-07 30.9 62.3 5 13 0.0069 5.9 7.3 0.1 2 22 338 358 337 358 0.91 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF790-208 - 636 2.4e-07 30.9 62.3 6 13 0.0012 1 9.7 0.2 2 22 366 386 365 386 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF790-208 - 636 2.4e-07 30.9 62.3 7 13 8.3 7e+03 -2.5 0.2 2 20 394 412 393 414 0.70 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF790-208 - 636 2.4e-07 30.9 62.3 8 13 0.016 14 6.1 0.2 2 22 422 442 421 442 0.88 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF790-208 - 636 2.4e-07 30.9 62.3 9 13 0.0023 2 8.8 0.8 2 22 450 470 449 470 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF790-208 - 636 2.4e-07 30.9 62.3 10 13 0.0034 2.9 8.3 0.4 2 22 478 498 477 498 0.91 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF790-208 - 636 2.4e-07 30.9 62.3 11 13 0.091 77 3.7 0.0 2 20 506 524 505 526 0.74 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF790-208 - 636 2.4e-07 30.9 62.3 12 13 0.013 11 6.5 0.0 2 22 534 554 533 554 0.87 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF790-208 - 636 2.4e-07 30.9 62.3 13 13 3 2.5e+03 -1.1 1.5 10 22 597 609 597 609 0.92 Zinc-finger double-stranded RNA-binding # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF790-208.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF790-208.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF790-208.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF790-208.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF790-208.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:14:36 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZNF791-201 - 576 1.9e-134 432.7 149.0 1 19 0.85 8.5e+02 0.7 0.1 6 13 63 70 56 85 0.80 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF791-201 - 576 1.9e-134 432.7 149.0 2 19 0.00013 0.13 12.8 0.5 11 24 96 109 91 109 0.88 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF791-201 - 576 1.9e-134 432.7 149.0 3 19 4.2e-10 4.2e-07 30.1 2.2 1 25 114 142 114 143 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF791-201 - 576 1.9e-134 432.7 149.0 4 19 1e-11 1e-08 35.2 2.5 2 24 147 169 146 171 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF791-201 - 576 1.9e-134 432.7 149.0 5 19 2.2e-09 2.2e-06 27.8 2.2 2 23 175 196 175 199 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF791-201 - 576 1.9e-134 432.7 149.0 6 19 8.2e-12 8.1e-09 35.5 1.4 1 25 202 226 202 227 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF791-201 - 576 1.9e-134 432.7 149.0 7 19 1.6e-10 1.6e-07 31.4 0.4 3 25 232 254 230 255 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF791-201 - 576 1.9e-134 432.7 149.0 8 19 8.9e-09 8.9e-06 25.9 0.3 5 24 262 281 259 282 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF791-201 - 576 1.9e-134 432.7 149.0 9 19 1.5e-10 1.5e-07 31.5 3.0 2 25 287 310 287 311 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF791-201 - 576 1.9e-134 432.7 149.0 10 19 1.4e-10 1.4e-07 31.6 0.7 5 25 318 338 315 339 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF791-201 - 576 1.9e-134 432.7 149.0 11 19 6.9e-12 6.9e-09 35.7 1.1 1 25 342 366 342 367 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF791-201 - 576 1.9e-134 432.7 149.0 12 19 8e-11 7.9e-08 32.4 3.9 3 25 372 394 370 395 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF791-201 - 576 1.9e-134 432.7 149.0 13 19 1.6e-11 1.6e-08 34.6 1.0 2 25 399 422 398 423 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF791-201 - 576 1.9e-134 432.7 149.0 14 19 3.3e-10 3.3e-07 30.4 0.2 1 24 426 449 426 450 0.97 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF791-201 - 576 1.9e-134 432.7 149.0 15 19 5.1e-12 5.1e-09 36.2 2.4 1 25 454 478 454 479 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF791-201 - 576 1.9e-134 432.7 149.0 16 19 7.9e-11 7.9e-08 32.4 1.4 5 24 486 505 483 507 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF791-201 - 576 1.9e-134 432.7 149.0 17 19 1.5e-11 1.5e-08 34.7 1.4 3 25 512 534 510 534 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF791-201 - 576 1.9e-134 432.7 149.0 18 19 2.3e-08 2.3e-05 24.6 1.1 2 25 539 562 538 562 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF791-201 - 576 1.9e-134 432.7 149.0 19 19 0.19 1.9e+02 2.7 1.6 1 10 566 575 566 576 0.89 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZNF791-201 - 576 5.9e-77 250.1 140.0 1 17 1.3e-09 1.3e-06 28.5 0.9 1 23 100 122 100 122 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF791-201 - 576 5.9e-77 250.1 140.0 2 17 1.8e-06 0.0018 18.6 2.7 1 23 132 154 132 154 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF791-201 - 576 5.9e-77 250.1 140.0 3 17 2e-05 0.02 15.3 4.5 1 23 160 182 160 182 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF791-201 - 576 5.9e-77 250.1 140.0 4 17 5.6e-05 0.056 13.9 1.2 1 23 188 210 188 210 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF791-201 - 576 5.9e-77 250.1 140.0 5 17 2.3e-05 0.023 15.1 2.2 1 23 216 238 216 238 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF791-201 - 576 5.9e-77 250.1 140.0 6 17 5e-06 0.005 17.2 0.7 1 23 244 266 244 266 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF791-201 - 576 5.9e-77 250.1 140.0 7 17 1.1e-07 0.0001 22.5 0.4 1 23 272 294 272 294 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF791-201 - 576 5.9e-77 250.1 140.0 8 17 0.00035 0.35 11.4 2.2 1 23 300 322 300 322 0.95 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF791-201 - 576 5.9e-77 250.1 140.0 9 17 5.3e-08 5.2e-05 23.5 0.5 1 23 328 350 328 350 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF791-201 - 576 5.9e-77 250.1 140.0 10 17 6.3e-08 6.3e-05 23.2 1.5 1 23 356 378 356 378 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF791-201 - 576 5.9e-77 250.1 140.0 11 17 3.4e-07 0.00034 20.9 1.3 1 23 384 406 384 406 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF791-201 - 576 5.9e-77 250.1 140.0 12 17 1.6e-07 0.00016 21.9 0.8 1 23 412 434 412 434 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF791-201 - 576 5.9e-77 250.1 140.0 13 17 9.5e-09 9.4e-06 25.8 0.6 1 23 440 462 440 462 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF791-201 - 576 5.9e-77 250.1 140.0 14 17 0.00012 0.12 12.9 3.4 1 23 468 490 468 490 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF791-201 - 576 5.9e-77 250.1 140.0 15 17 1.1e-07 0.00011 22.5 0.4 1 23 496 518 496 518 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF791-201 - 576 5.9e-77 250.1 140.0 16 17 4.3e-07 0.00043 20.6 3.5 1 23 524 546 524 546 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF791-201 - 576 5.9e-77 250.1 140.0 17 17 2.7e-08 2.6e-05 24.4 1.0 2 23 553 574 552 574 0.97 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZNF791-201 - 576 1.6e-64 208.9 132.6 1 17 1.2e-07 0.00012 22.6 0.6 1 23 100 122 100 123 0.97 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF791-201 - 576 1.6e-64 208.9 132.6 2 17 8.7e-06 0.0087 16.8 2.6 1 23 132 154 132 155 0.97 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF791-201 - 576 1.6e-64 208.9 132.6 3 17 3.1e-06 0.0031 18.2 2.5 1 23 160 182 160 183 0.97 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF791-201 - 576 1.6e-64 208.9 132.6 4 17 1.3e-05 0.012 16.3 1.6 1 23 188 210 188 211 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF791-201 - 576 1.6e-64 208.9 132.6 5 17 1.4e-06 0.0014 19.3 2.3 1 23 216 238 216 239 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF791-201 - 576 1.6e-64 208.9 132.6 6 17 5.9e-06 0.0059 17.4 0.5 1 23 244 266 244 267 0.97 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF791-201 - 576 1.6e-64 208.9 132.6 7 17 0.00018 0.18 12.7 0.5 1 23 272 294 272 295 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF791-201 - 576 1.6e-64 208.9 132.6 8 17 2.3e-05 0.023 15.5 1.8 1 23 300 322 300 323 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF791-201 - 576 1.6e-64 208.9 132.6 9 17 3.9e-06 0.0039 17.9 0.7 1 23 328 350 328 351 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF791-201 - 576 1.6e-64 208.9 132.6 10 17 1.1e-05 0.011 16.5 1.1 1 23 356 378 356 379 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF791-201 - 576 1.6e-64 208.9 132.6 11 17 1.5e-05 0.015 16.1 0.7 1 23 384 406 384 407 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF791-201 - 576 1.6e-64 208.9 132.6 12 17 1.2e-06 0.0012 19.5 0.6 1 23 412 434 412 435 0.97 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF791-201 - 576 1.6e-64 208.9 132.6 13 17 3.2e-06 0.0031 18.2 0.5 1 23 440 462 440 463 0.97 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF791-201 - 576 1.6e-64 208.9 132.6 14 17 1.1e-05 0.011 16.5 2.8 1 23 468 490 468 491 0.90 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF791-201 - 576 1.6e-64 208.9 132.6 15 17 6.4e-06 0.0063 17.2 0.4 1 23 496 518 496 519 0.97 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF791-201 - 576 1.6e-64 208.9 132.6 16 17 7.2e-05 0.072 14.0 2.6 1 23 524 546 524 547 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF791-201 - 576 1.6e-64 208.9 132.6 17 17 6.4e-07 0.00063 20.4 0.9 2 23 553 574 552 575 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF791-201 - 576 5.3e-33 112.4 132.9 1 17 5.4e-08 5.4e-05 23.1 0.4 2 24 100 122 100 124 0.97 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF791-201 - 576 5.3e-33 112.4 132.9 2 17 3.6e-05 0.035 14.1 3.6 2 24 132 154 132 157 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF791-201 - 576 5.3e-33 112.4 132.9 3 17 0.001 1 9.5 1.3 2 11 160 169 160 182 0.90 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF791-201 - 576 5.3e-33 112.4 132.9 4 17 0.012 12 6.0 1.3 2 12 188 198 188 210 0.81 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF791-201 - 576 5.3e-33 112.4 132.9 5 17 0.0021 2 8.5 1.9 2 12 216 226 216 239 0.88 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF791-201 - 576 5.3e-33 112.4 132.9 6 17 0.00011 0.11 12.5 0.6 2 24 244 266 244 268 0.95 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF791-201 - 576 5.3e-33 112.4 132.9 7 17 0.0043 4.3 7.4 1.4 2 11 272 281 272 281 0.96 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF791-201 - 576 5.3e-33 112.4 132.9 8 17 0.0021 2.1 8.5 0.9 2 12 300 310 300 310 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF791-201 - 576 5.3e-33 112.4 132.9 9 17 0.00049 0.49 10.5 2.1 2 12 328 338 328 338 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF791-201 - 576 5.3e-33 112.4 132.9 10 17 0.00036 0.36 10.9 0.9 2 14 356 368 356 379 0.87 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF791-201 - 576 5.3e-33 112.4 132.9 11 17 9.3e-06 0.0093 16.0 0.7 2 24 384 406 384 409 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF791-201 - 576 5.3e-33 112.4 132.9 12 17 2.5e-06 0.0025 17.8 0.3 2 24 412 434 412 436 0.97 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF791-201 - 576 5.3e-33 112.4 132.9 13 17 0.0042 4.2 7.5 0.1 2 24 440 462 440 465 0.92 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF791-201 - 576 5.3e-33 112.4 132.9 14 17 0.023 22 5.2 5.2 2 12 468 478 468 493 0.89 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF791-201 - 576 5.3e-33 112.4 132.9 15 17 4e-05 0.04 13.9 0.4 2 24 496 518 496 521 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF791-201 - 576 5.3e-33 112.4 132.9 16 17 0.0016 1.6 8.8 1.3 2 12 524 534 524 534 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF791-201 - 576 5.3e-33 112.4 132.9 17 17 6.2e-05 0.062 13.3 1.9 3 24 553 574 553 576 0.95 C2H2-type zinc finger zf-C2H2_jaz PF12171.8 27 ZNF791-201 - 576 2.3e-23 81.9 86.6 1 17 0.0015 1.5 9.2 0.0 2 24 100 122 99 122 0.95 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF791-201 - 576 2.3e-23 81.9 86.6 2 17 0.0003 0.3 11.4 2.8 2 24 132 154 131 154 0.95 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF791-201 - 576 2.3e-23 81.9 86.6 3 17 0.00062 0.62 10.4 1.1 2 24 160 182 159 183 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF791-201 - 576 2.3e-23 81.9 86.6 4 17 0.34 3.4e+02 1.7 0.1 2 22 188 208 187 208 0.85 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF791-201 - 576 2.3e-23 81.9 86.6 5 17 0.022 22 5.5 1.0 2 24 216 238 215 238 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF791-201 - 576 2.3e-23 81.9 86.6 6 17 0.00012 0.12 12.7 0.2 2 24 244 266 243 267 0.90 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF791-201 - 576 2.3e-23 81.9 86.6 7 17 0.013 13 6.2 0.1 2 22 272 292 271 292 0.86 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF791-201 - 576 2.3e-23 81.9 86.6 8 17 0.43 4.2e+02 1.4 0.8 2 15 300 313 299 320 0.73 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF791-201 - 576 2.3e-23 81.9 86.6 9 17 0.019 19 5.7 0.1 2 12 328 338 327 348 0.76 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF791-201 - 576 2.3e-23 81.9 86.6 10 17 0.00042 0.42 11.0 0.5 2 24 356 378 355 378 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF791-201 - 576 2.3e-23 81.9 86.6 11 17 0.091 91 3.5 0.6 2 22 384 404 383 406 0.86 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF791-201 - 576 2.3e-23 81.9 86.6 12 17 1.5e-06 0.0015 18.8 0.3 2 23 412 433 411 434 0.91 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF791-201 - 576 2.3e-23 81.9 86.6 13 17 0.0038 3.8 7.9 0.0 2 24 440 462 439 462 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF791-201 - 576 2.3e-23 81.9 86.6 14 17 0.51 5.1e+02 1.1 1.8 2 12 468 478 467 490 0.74 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF791-201 - 576 2.3e-23 81.9 86.6 15 17 0.00065 0.65 10.4 0.0 2 22 496 516 495 516 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF791-201 - 576 2.3e-23 81.9 86.6 16 17 0.001 1 9.7 0.3 2 21 524 543 523 544 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF791-201 - 576 2.3e-23 81.9 86.6 17 17 0.0063 6.3 7.2 0.0 2 22 552 572 551 572 0.93 Zinc-finger double-stranded RNA-binding KRAB PF01352.27 42 ZNF791-201 - 576 1.2e-22 79.3 0.1 1 1 1.9e-25 1.9e-22 78.6 0.1 1 42 3 44 3 44 0.98 KRAB box Zn-ribbon_8 PF09723.10 40 ZNF791-201 - 576 1.7e-19 69.6 96.4 1 13 0.014 14 5.9 0.0 6 20 100 114 99 120 0.86 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF791-201 - 576 1.7e-19 69.6 96.4 2 13 0.0064 6.3 7.0 0.7 6 22 132 148 131 155 0.82 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF791-201 - 576 1.7e-19 69.6 96.4 3 13 0.00019 0.19 11.9 5.5 6 36 160 197 159 200 0.74 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF791-201 - 576 1.7e-19 69.6 96.4 4 13 0.00048 0.48 10.6 6.7 6 34 216 251 215 254 0.82 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF791-201 - 576 1.7e-19 69.6 96.4 5 13 0.00036 0.35 11.0 5.6 6 36 272 309 271 311 0.88 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF791-201 - 576 1.7e-19 69.6 96.4 6 13 0.00033 0.33 11.1 5.9 6 34 300 335 299 337 0.85 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF791-201 - 576 1.7e-19 69.6 96.4 7 13 1.6e-06 0.0016 18.5 3.1 6 39 328 368 327 369 0.90 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF791-201 - 576 1.7e-19 69.6 96.4 8 13 0.0012 1.2 9.4 0.3 6 19 356 369 355 377 0.84 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF791-201 - 576 1.7e-19 69.6 96.4 9 13 4.2e-05 0.042 14.0 3.4 6 34 384 419 383 423 0.91 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF791-201 - 576 1.7e-19 69.6 96.4 10 13 0.0038 3.8 7.7 0.1 6 15 440 449 439 463 0.89 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF791-201 - 576 1.7e-19 69.6 96.4 11 13 0.00032 0.32 11.1 6.7 6 34 468 503 467 506 0.90 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF791-201 - 576 1.7e-19 69.6 96.4 12 13 6e-05 0.059 13.5 3.9 6 34 524 559 523 564 0.72 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF791-201 - 576 1.7e-19 69.6 96.4 13 13 0.019 19 5.5 0.3 7 18 553 564 545 570 0.78 Zinc ribbon domain zf-trcl PF13451.6 48 ZNF791-201 - 576 7.4e-17 61.0 78.1 1 15 0.86 8.6e+02 -0.1 0.1 3 14 98 109 98 111 0.86 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF791-201 - 576 7.4e-17 61.0 78.1 2 15 0.012 12 5.9 0.3 3 19 130 146 128 150 0.79 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF791-201 - 576 7.4e-17 61.0 78.1 3 15 0.00012 0.12 12.3 4.5 3 41 158 195 156 198 0.86 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF791-201 - 576 7.4e-17 61.0 78.1 4 15 0.043 42 4.1 0.6 3 14 214 225 212 229 0.88 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF791-201 - 576 7.4e-17 61.0 78.1 5 15 0.0084 8.4 6.4 0.1 3 15 242 254 240 257 0.91 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF791-201 - 576 7.4e-17 61.0 78.1 6 15 7.9e-05 0.079 12.9 0.0 2 16 269 283 268 285 0.93 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF791-201 - 576 7.4e-17 61.0 78.1 7 15 0.015 15 5.6 0.6 3 14 298 309 296 316 0.87 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF791-201 - 576 7.4e-17 61.0 78.1 8 15 0.011 11 6.0 0.2 3 14 326 337 324 338 0.89 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF791-201 - 576 7.4e-17 61.0 78.1 9 15 0.014 14 5.6 0.1 3 14 354 365 352 367 0.88 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF791-201 - 576 7.4e-17 61.0 78.1 10 15 0.017 17 5.4 0.0 3 15 382 394 380 397 0.87 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF791-201 - 576 7.4e-17 61.0 78.1 11 15 0.049 49 3.9 0.1 3 15 410 422 408 424 0.89 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF791-201 - 576 7.4e-17 61.0 78.1 12 15 0.00015 0.15 12.0 0.0 2 17 437 452 436 455 0.89 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF791-201 - 576 7.4e-17 61.0 78.1 13 15 0.05 50 3.9 0.7 3 14 466 477 464 480 0.88 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF791-201 - 576 7.4e-17 61.0 78.1 14 15 0.00011 0.11 12.4 2.6 3 41 494 531 492 532 0.87 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF791-201 - 576 7.4e-17 61.0 78.1 15 15 0.001 1 9.3 3.6 3 41 522 559 520 565 0.90 Probable zinc-ribbon domain Zn_ribbon_SprT PF17283.2 38 ZNF791-201 - 576 9.5e-16 57.4 74.0 1 13 6.8 6.8e+03 -2.9 0.0 9 20 79 90 79 95 0.84 SprT-like zinc ribbon domain Zn_ribbon_SprT PF17283.2 38 ZNF791-201 - 576 9.5e-16 57.4 74.0 2 13 0.00031 0.31 11.0 0.4 5 32 100 139 99 145 0.92 SprT-like zinc ribbon domain Zn_ribbon_SprT PF17283.2 38 ZNF791-201 - 576 9.5e-16 57.4 74.0 3 13 2.9e-05 0.029 14.3 4.2 5 34 132 169 131 172 0.94 SprT-like zinc ribbon domain Zn_ribbon_SprT PF17283.2 38 ZNF791-201 - 576 9.5e-16 57.4 74.0 4 13 4.4e-05 0.043 13.7 3.9 5 37 160 200 159 201 0.95 SprT-like zinc ribbon domain Zn_ribbon_SprT PF17283.2 38 ZNF791-201 - 576 9.5e-16 57.4 74.0 5 13 0.0016 1.6 8.7 3.8 5 32 216 251 208 258 0.93 SprT-like zinc ribbon domain Zn_ribbon_SprT PF17283.2 38 ZNF791-201 - 576 9.5e-16 57.4 74.0 6 13 7e-05 0.069 13.1 1.5 5 36 272 311 271 313 0.93 SprT-like zinc ribbon domain Zn_ribbon_SprT PF17283.2 38 ZNF791-201 - 576 9.5e-16 57.4 74.0 7 13 0.001 1 9.4 2.3 5 32 328 363 327 369 0.93 SprT-like zinc ribbon domain Zn_ribbon_SprT PF17283.2 38 ZNF791-201 - 576 9.5e-16 57.4 74.0 8 13 0.00012 0.12 12.3 2.7 5 35 356 394 355 397 0.95 SprT-like zinc ribbon domain Zn_ribbon_SprT PF17283.2 38 ZNF791-201 - 576 9.5e-16 57.4 74.0 9 13 0.00018 0.18 11.8 1.1 5 35 384 422 383 425 0.93 SprT-like zinc ribbon domain Zn_ribbon_SprT PF17283.2 38 ZNF791-201 - 576 9.5e-16 57.4 74.0 10 13 0.00013 0.13 12.2 1.5 5 36 440 479 439 481 0.93 SprT-like zinc ribbon domain Zn_ribbon_SprT PF17283.2 38 ZNF791-201 - 576 9.5e-16 57.4 74.0 11 13 0.043 43 4.1 3.5 5 32 468 503 468 510 0.87 SprT-like zinc ribbon domain Zn_ribbon_SprT PF17283.2 38 ZNF791-201 - 576 9.5e-16 57.4 74.0 12 13 0.00016 0.16 11.9 0.5 5 33 496 532 495 535 0.93 SprT-like zinc ribbon domain Zn_ribbon_SprT PF17283.2 38 ZNF791-201 - 576 9.5e-16 57.4 74.0 13 13 1.9e-05 0.019 14.9 2.1 5 35 524 562 523 565 0.92 SprT-like zinc ribbon domain zf-C2H2_11 PF16622.5 29 ZNF791-201 - 576 5e-12 45.4 84.4 1 17 0.0041 4.1 7.3 0.5 6 25 101 120 99 121 0.93 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF791-201 - 576 5e-12 45.4 84.4 2 17 0.062 62 3.5 0.1 5 23 132 150 129 152 0.91 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF791-201 - 576 5e-12 45.4 84.4 3 17 0.11 1e+02 2.7 0.3 5 15 160 170 157 180 0.75 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF791-201 - 576 5e-12 45.4 84.4 4 17 0.035 35 4.3 1.4 6 26 189 209 186 210 0.92 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF791-201 - 576 5e-12 45.4 84.4 5 17 0.026 25 4.7 1.0 6 23 217 234 214 236 0.87 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF791-201 - 576 5e-12 45.4 84.4 6 17 0.0086 8.6 6.2 0.3 7 25 246 264 243 266 0.88 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF791-201 - 576 5e-12 45.4 84.4 7 17 0.1 1e+02 2.8 0.1 5 23 272 290 271 294 0.71 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF791-201 - 576 5e-12 45.4 84.4 8 17 0.049 49 3.8 1.0 5 26 300 321 297 322 0.81 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF791-201 - 576 5e-12 45.4 84.4 9 17 0.0033 3.3 7.5 0.0 5 25 328 348 325 350 0.87 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF791-201 - 576 5e-12 45.4 84.4 10 17 0.05 50 3.8 0.1 5 15 356 366 353 370 0.88 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF791-201 - 576 5e-12 45.4 84.4 11 17 0.33 3.2e+02 1.2 0.0 6 23 385 402 383 404 0.77 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF791-201 - 576 5e-12 45.4 84.4 12 17 0.098 97 2.9 0.1 6 25 413 432 410 434 0.85 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF791-201 - 576 5e-12 45.4 84.4 13 17 0.032 32 4.4 0.0 5 23 440 458 437 460 0.79 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF791-201 - 576 5e-12 45.4 84.4 14 17 0.22 2.2e+02 1.7 1.0 6 16 469 479 466 487 0.84 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF791-201 - 576 5e-12 45.4 84.4 15 17 0.043 43 4.0 0.1 6 26 497 517 494 518 0.91 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF791-201 - 576 5e-12 45.4 84.4 16 17 2.3e-05 0.023 14.5 0.7 5 26 524 545 521 546 0.94 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF791-201 - 576 5e-12 45.4 84.4 17 17 4.3e-07 0.00043 20.0 0.5 7 26 554 573 551 574 0.94 zinc-finger C2H2-type DUF3268 PF11672.8 118 ZNF791-201 - 576 3.9e-10 40.1 57.2 1 8 0.12 1.2e+02 3.0 0.5 2 38 99 139 98 153 0.66 zinc-finger-containing domain DUF3268 PF11672.8 118 ZNF791-201 - 576 3.9e-10 40.1 57.2 2 8 0.0014 1.4 9.2 1.6 2 42 159 199 158 212 0.81 zinc-finger-containing domain DUF3268 PF11672.8 118 ZNF791-201 - 576 3.9e-10 40.1 57.2 3 8 0.00018 0.18 12.2 1.7 2 39 215 252 214 263 0.87 zinc-finger-containing domain DUF3268 PF11672.8 118 ZNF791-201 - 576 3.9e-10 40.1 57.2 4 8 0.00064 0.64 10.4 0.8 3 45 272 314 270 324 0.87 zinc-finger-containing domain DUF3268 PF11672.8 118 ZNF791-201 - 576 3.9e-10 40.1 57.2 5 8 0.00085 0.85 10.0 0.7 2 44 327 375 326 381 0.80 zinc-finger-containing domain DUF3268 PF11672.8 118 ZNF791-201 - 576 3.9e-10 40.1 57.2 6 8 0.00043 0.43 10.9 0.5 2 37 383 418 382 428 0.91 zinc-finger-containing domain DUF3268 PF11672.8 118 ZNF791-201 - 576 3.9e-10 40.1 57.2 7 8 8.5e-05 0.084 13.2 1.5 3 47 440 490 438 493 0.87 zinc-finger-containing domain DUF3268 PF11672.8 118 ZNF791-201 - 576 3.9e-10 40.1 57.2 8 8 0.0084 8.3 6.8 2.4 2 45 495 538 494 561 0.88 zinc-finger-containing domain zf_UBZ PF18439.1 32 ZNF791-201 - 576 1.9e-09 36.9 83.6 1 17 0.3 3e+02 1.1 0.1 3 12 100 109 98 118 0.87 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF791-201 - 576 1.9e-09 36.9 83.6 2 17 0.056 56 3.5 0.3 3 14 132 143 130 151 0.75 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF791-201 - 576 1.9e-09 36.9 83.6 3 17 0.01 10 5.8 0.4 3 13 160 170 158 179 0.80 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF791-201 - 576 1.9e-09 36.9 83.6 4 17 0.017 17 5.1 0.6 3 15 188 200 186 207 0.80 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF791-201 - 576 1.9e-09 36.9 83.6 5 17 0.011 11 5.7 0.9 3 15 216 228 214 235 0.83 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF791-201 - 576 1.9e-09 36.9 83.6 6 17 0.0024 2.4 7.8 0.1 3 20 244 262 242 263 0.87 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF791-201 - 576 1.9e-09 36.9 83.6 7 17 0.018 18 5.1 0.1 3 12 272 281 270 287 0.84 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF791-201 - 576 1.9e-09 36.9 83.6 8 17 0.034 33 4.2 1.7 3 17 300 315 298 319 0.76 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF791-201 - 576 1.9e-09 36.9 83.6 9 17 0.0034 3.4 7.4 0.1 3 13 328 338 326 345 0.89 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF791-201 - 576 1.9e-09 36.9 83.6 10 17 0.014 13 5.4 0.2 3 13 356 366 354 369 0.88 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF791-201 - 576 1.9e-09 36.9 83.6 11 17 0.015 15 5.2 0.1 3 12 384 393 382 402 0.86 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF791-201 - 576 1.9e-09 36.9 83.6 12 17 0.13 1.3e+02 2.3 0.2 3 13 412 422 410 430 0.84 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF791-201 - 576 1.9e-09 36.9 83.6 13 17 0.014 14 5.3 0.0 3 20 440 458 438 459 0.82 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF791-201 - 576 1.9e-09 36.9 83.6 14 17 0.017 17 5.1 1.0 3 15 468 480 466 483 0.86 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF791-201 - 576 1.9e-09 36.9 83.6 15 17 0.02 20 4.9 0.1 3 13 496 506 494 515 0.76 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF791-201 - 576 1.9e-09 36.9 83.6 16 17 0.00074 0.74 9.5 0.3 3 20 524 542 522 543 0.89 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF791-201 - 576 1.9e-09 36.9 83.6 17 17 0.014 14 5.3 0.1 4 20 553 570 551 571 0.80 Ubiquitin-Binding Zinc Finger XPA_N PF01286.18 32 ZNF791-201 - 576 1.6e-07 31.2 84.9 1 17 0.29 2.9e+02 1.6 0.0 3 12 101 110 99 114 0.90 XPA protein N-terminal XPA_N PF01286.18 32 ZNF791-201 - 576 1.6e-07 31.2 84.9 2 17 0.017 17 5.6 0.6 3 12 133 142 131 147 0.86 XPA protein N-terminal XPA_N PF01286.18 32 ZNF791-201 - 576 1.6e-07 31.2 84.9 3 17 0.041 41 4.3 0.1 3 11 161 169 159 171 0.90 XPA protein N-terminal XPA_N PF01286.18 32 ZNF791-201 - 576 1.6e-07 31.2 84.9 4 17 0.25 2.5e+02 1.8 1.0 3 12 189 198 187 203 0.84 XPA protein N-terminal XPA_N PF01286.18 32 ZNF791-201 - 576 1.6e-07 31.2 84.9 5 17 0.082 81 3.4 1.8 3 14 217 228 215 229 0.86 XPA protein N-terminal XPA_N PF01286.18 32 ZNF791-201 - 576 1.6e-07 31.2 84.9 6 17 0.021 21 5.3 0.0 4 11 246 253 243 259 0.90 XPA protein N-terminal XPA_N PF01286.18 32 ZNF791-201 - 576 1.6e-07 31.2 84.9 7 17 0.0086 8.6 6.5 0.2 3 11 273 281 271 288 0.87 XPA protein N-terminal XPA_N PF01286.18 32 ZNF791-201 - 576 1.6e-07 31.2 84.9 8 17 0.045 44 4.2 0.9 3 13 301 311 299 313 0.85 XPA protein N-terminal XPA_N PF01286.18 32 ZNF791-201 - 576 1.6e-07 31.2 84.9 9 17 0.011 11 6.1 0.3 3 11 329 337 327 339 0.88 XPA protein N-terminal XPA_N PF01286.18 32 ZNF791-201 - 576 1.6e-07 31.2 84.9 10 17 0.0052 5.1 7.2 0.1 3 12 357 366 355 373 0.85 XPA protein N-terminal XPA_N PF01286.18 32 ZNF791-201 - 576 1.6e-07 31.2 84.9 11 17 0.03 30 4.8 0.2 3 11 385 393 383 395 0.89 XPA protein N-terminal XPA_N PF01286.18 32 ZNF791-201 - 576 1.6e-07 31.2 84.9 12 17 0.033 33 4.6 0.3 3 11 413 421 411 423 0.88 XPA protein N-terminal XPA_N PF01286.18 32 ZNF791-201 - 576 1.6e-07 31.2 84.9 13 17 0.17 1.7e+02 2.3 0.1 3 11 441 449 439 451 0.87 XPA protein N-terminal XPA_N PF01286.18 32 ZNF791-201 - 576 1.6e-07 31.2 84.9 14 17 0.0099 9.9 6.3 0.5 3 16 469 482 467 486 0.84 XPA protein N-terminal XPA_N PF01286.18 32 ZNF791-201 - 576 1.6e-07 31.2 84.9 15 17 0.013 13 5.9 0.1 3 11 497 505 495 507 0.90 XPA protein N-terminal XPA_N PF01286.18 32 ZNF791-201 - 576 1.6e-07 31.2 84.9 16 17 0.0081 8.1 6.6 0.1 3 11 525 533 523 538 0.90 XPA protein N-terminal XPA_N PF01286.18 32 ZNF791-201 - 576 1.6e-07 31.2 84.9 17 17 0.0075 7.5 6.7 0.2 2 14 552 564 551 568 0.89 XPA protein N-terminal # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF791-201.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF791-201.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF791-201.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF791-201.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF791-201.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:14:37 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZNF791-202 - 467 6e-134 431.1 138.7 1 17 4e-10 3.2e-07 30.5 2.2 1 25 5 33 5 34 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF791-202 - 467 6e-134 431.1 138.7 2 17 9.5e-12 7.8e-09 35.6 2.5 2 24 38 60 37 62 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF791-202 - 467 6e-134 431.1 138.7 3 17 2.1e-09 1.7e-06 28.2 2.2 2 23 66 87 66 90 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF791-202 - 467 6e-134 431.1 138.7 4 17 7.8e-12 6.3e-09 35.9 1.4 1 25 93 117 93 118 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF791-202 - 467 6e-134 431.1 138.7 5 17 1.5e-10 1.3e-07 31.8 0.4 3 25 123 145 121 146 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF791-202 - 467 6e-134 431.1 138.7 6 17 8.5e-09 6.9e-06 26.3 0.3 5 24 153 172 150 173 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF791-202 - 467 6e-134 431.1 138.7 7 17 1.4e-10 1.1e-07 31.9 3.0 2 25 178 201 178 202 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF791-202 - 467 6e-134 431.1 138.7 8 17 1.3e-10 1.1e-07 32.0 0.7 5 25 209 229 206 230 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF791-202 - 467 6e-134 431.1 138.7 9 17 6.6e-12 5.4e-09 36.1 1.1 1 25 233 257 233 258 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF791-202 - 467 6e-134 431.1 138.7 10 17 7.6e-11 6.2e-08 32.7 3.9 3 25 263 285 261 286 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF791-202 - 467 6e-134 431.1 138.7 11 17 1.5e-11 1.3e-08 34.9 1.0 2 25 290 313 289 314 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF791-202 - 467 6e-134 431.1 138.7 12 17 3.1e-10 2.6e-07 30.8 0.2 1 24 317 340 317 341 0.97 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF791-202 - 467 6e-134 431.1 138.7 13 17 4.8e-12 3.9e-09 36.5 2.4 1 25 345 369 345 370 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF791-202 - 467 6e-134 431.1 138.7 14 17 7.5e-11 6.1e-08 32.7 1.4 5 24 377 396 374 398 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF791-202 - 467 6e-134 431.1 138.7 15 17 1.4e-11 1.2e-08 35.0 1.4 3 25 403 425 401 425 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF791-202 - 467 6e-134 431.1 138.7 16 17 2.2e-08 1.8e-05 25.0 1.1 2 25 430 453 429 453 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF791-202 - 467 6e-134 431.1 138.7 17 17 0.18 1.5e+02 3.1 1.6 1 10 457 466 457 467 0.89 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZNF791-202 - 467 2.5e-71 232.3 141.5 1 17 0.018 14 6.3 1.8 12 23 2 13 1 13 0.92 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF791-202 - 467 2.5e-71 232.3 141.5 2 17 1.7e-06 0.0014 18.9 2.7 1 23 23 45 23 45 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF791-202 - 467 2.5e-71 232.3 141.5 3 17 1.9e-05 0.015 15.7 4.5 1 23 51 73 51 73 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF791-202 - 467 2.5e-71 232.3 141.5 4 17 5.3e-05 0.043 14.3 1.2 1 23 79 101 79 101 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF791-202 - 467 2.5e-71 232.3 141.5 5 17 2.2e-05 0.018 15.5 2.2 1 23 107 129 107 129 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF791-202 - 467 2.5e-71 232.3 141.5 6 17 4.8e-06 0.0039 17.6 0.7 1 23 135 157 135 157 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF791-202 - 467 2.5e-71 232.3 141.5 7 17 1e-07 8.1e-05 22.9 0.4 1 23 163 185 163 185 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF791-202 - 467 2.5e-71 232.3 141.5 8 17 0.00034 0.27 11.8 2.2 1 23 191 213 191 213 0.95 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF791-202 - 467 2.5e-71 232.3 141.5 9 17 5e-08 4.1e-05 23.8 0.5 1 23 219 241 219 241 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF791-202 - 467 2.5e-71 232.3 141.5 10 17 6e-08 4.9e-05 23.6 1.5 1 23 247 269 247 269 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF791-202 - 467 2.5e-71 232.3 141.5 11 17 3.3e-07 0.00027 21.2 1.3 1 23 275 297 275 297 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF791-202 - 467 2.5e-71 232.3 141.5 12 17 1.5e-07 0.00012 22.3 0.8 1 23 303 325 303 325 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF791-202 - 467 2.5e-71 232.3 141.5 13 17 9e-09 7.3e-06 26.1 0.6 1 23 331 353 331 353 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF791-202 - 467 2.5e-71 232.3 141.5 14 17 0.00011 0.094 13.2 3.4 1 23 359 381 359 381 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF791-202 - 467 2.5e-71 232.3 141.5 15 17 1e-07 8.3e-05 22.8 0.4 1 23 387 409 387 409 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF791-202 - 467 2.5e-71 232.3 141.5 16 17 4.1e-07 0.00033 20.9 3.5 1 23 415 437 415 437 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF791-202 - 467 2.5e-71 232.3 141.5 17 17 2.5e-08 2.1e-05 24.7 1.0 2 23 444 465 443 465 0.97 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZNF791-202 - 467 6.8e-60 194.5 132.4 1 17 0.28 2.3e+02 3.0 0.5 14 23 4 13 1 14 0.85 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF791-202 - 467 6.8e-60 194.5 132.4 2 17 8.3e-06 0.0068 17.2 2.6 1 23 23 45 23 46 0.97 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF791-202 - 467 6.8e-60 194.5 132.4 3 17 3e-06 0.0024 18.6 2.5 1 23 51 73 51 74 0.97 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF791-202 - 467 6.8e-60 194.5 132.4 4 17 1.2e-05 0.0097 16.7 1.6 1 23 79 101 79 102 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF791-202 - 467 6.8e-60 194.5 132.4 5 17 1.3e-06 0.0011 19.6 2.3 1 23 107 129 107 130 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF791-202 - 467 6.8e-60 194.5 132.4 6 17 5.6e-06 0.0046 17.7 0.5 1 23 135 157 135 158 0.97 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF791-202 - 467 6.8e-60 194.5 132.4 7 17 0.00017 0.14 13.1 0.5 1 23 163 185 163 186 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF791-202 - 467 6.8e-60 194.5 132.4 8 17 2.2e-05 0.018 15.9 1.8 1 23 191 213 191 214 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF791-202 - 467 6.8e-60 194.5 132.4 9 17 3.7e-06 0.003 18.2 0.7 1 23 219 241 219 242 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF791-202 - 467 6.8e-60 194.5 132.4 10 17 1.1e-05 0.0087 16.8 1.1 1 23 247 269 247 270 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF791-202 - 467 6.8e-60 194.5 132.4 11 17 1.4e-05 0.012 16.4 0.7 1 23 275 297 275 298 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF791-202 - 467 6.8e-60 194.5 132.4 12 17 1.2e-06 0.00094 19.8 0.6 1 23 303 325 303 326 0.97 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF791-202 - 467 6.8e-60 194.5 132.4 13 17 3e-06 0.0024 18.5 0.5 1 23 331 353 331 354 0.97 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF791-202 - 467 6.8e-60 194.5 132.4 14 17 1.1e-05 0.0088 16.8 2.8 1 23 359 381 359 382 0.90 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF791-202 - 467 6.8e-60 194.5 132.4 15 17 6e-06 0.0049 17.6 0.4 1 23 387 409 387 410 0.97 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF791-202 - 467 6.8e-60 194.5 132.4 16 17 6.9e-05 0.056 14.3 2.6 1 23 415 437 415 438 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF791-202 - 467 6.8e-60 194.5 132.4 17 17 6e-07 0.00049 20.7 0.9 2 23 444 465 443 466 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF791-202 - 467 3.1e-27 94.0 135.2 1 17 0.32 2.6e+02 1.8 0.3 16 24 5 13 2 15 0.86 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF791-202 - 467 3.1e-27 94.0 135.2 2 17 3.4e-05 0.028 14.4 3.6 2 24 23 45 23 48 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF791-202 - 467 3.1e-27 94.0 135.2 3 17 0.00097 0.79 9.8 1.3 2 11 51 60 51 73 0.90 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF791-202 - 467 3.1e-27 94.0 135.2 4 17 0.012 9.4 6.4 1.3 2 12 79 89 79 101 0.81 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF791-202 - 467 3.1e-27 94.0 135.2 5 17 0.002 1.6 8.8 1.9 2 12 107 117 107 130 0.88 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF791-202 - 467 3.1e-27 94.0 135.2 6 17 0.0001 0.085 12.9 0.6 2 24 135 157 135 159 0.95 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF791-202 - 467 3.1e-27 94.0 135.2 7 17 0.0042 3.4 7.8 1.4 2 11 163 172 163 172 0.96 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF791-202 - 467 3.1e-27 94.0 135.2 8 17 0.002 1.6 8.8 0.9 2 12 191 201 191 201 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF791-202 - 467 3.1e-27 94.0 135.2 9 17 0.00047 0.39 10.8 2.1 2 12 219 229 219 229 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF791-202 - 467 3.1e-27 94.0 135.2 10 17 0.00035 0.28 11.2 0.9 2 14 247 259 247 270 0.87 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF791-202 - 467 3.1e-27 94.0 135.2 11 17 8.9e-06 0.0072 16.3 0.7 2 24 275 297 275 300 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF791-202 - 467 3.1e-27 94.0 135.2 12 17 2.4e-06 0.0019 18.1 0.3 2 24 303 325 303 327 0.97 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF791-202 - 467 3.1e-27 94.0 135.2 13 17 0.0061 4.9 7.3 0.7 2 24 331 353 331 356 0.92 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF791-202 - 467 3.1e-27 94.0 135.2 14 17 0.023 18 5.4 5.3 2 12 359 369 359 384 0.88 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF791-202 - 467 3.1e-27 94.0 135.2 15 17 3.9e-05 0.031 14.3 0.4 2 24 387 409 387 412 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF791-202 - 467 3.1e-27 94.0 135.2 16 17 0.0016 1.3 9.1 1.3 2 12 415 425 415 425 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF791-202 - 467 3.1e-27 94.0 135.2 17 17 5.9e-05 0.048 13.7 1.9 3 24 444 465 444 467 0.95 C2H2-type zinc finger zf-C2H2_jaz PF12171.8 27 ZNF791-202 - 467 7.3e-21 73.9 90.0 1 17 5.3 4.3e+03 -1.8 0.2 16 24 5 13 4 13 0.83 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF791-202 - 467 7.3e-21 73.9 90.0 2 17 0.00029 0.24 11.8 2.8 2 24 23 45 22 45 0.95 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF791-202 - 467 7.3e-21 73.9 90.0 3 17 0.00059 0.48 10.8 1.1 2 24 51 73 50 74 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF791-202 - 467 7.3e-21 73.9 90.0 4 17 0.32 2.6e+02 2.0 0.1 2 22 79 99 78 99 0.85 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF791-202 - 467 7.3e-21 73.9 90.0 5 17 0.021 17 5.8 1.0 2 24 107 129 106 129 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF791-202 - 467 7.3e-21 73.9 90.0 6 17 0.00011 0.091 13.1 0.2 2 24 135 157 134 158 0.90 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF791-202 - 467 7.3e-21 73.9 90.0 7 17 0.013 10 6.5 0.1 2 22 163 183 162 183 0.86 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF791-202 - 467 7.3e-21 73.9 90.0 8 17 0.41 3.3e+02 1.7 0.8 2 16 191 205 190 211 0.73 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF791-202 - 467 7.3e-21 73.9 90.0 9 17 0.018 15 6.0 0.1 2 12 219 229 218 239 0.76 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF791-202 - 467 7.3e-21 73.9 90.0 10 17 0.0004 0.33 11.3 0.5 2 24 247 269 246 269 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF791-202 - 467 7.3e-21 73.9 90.0 11 17 0.087 71 3.9 0.6 2 22 275 295 274 297 0.86 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF791-202 - 467 7.3e-21 73.9 90.0 12 17 1.4e-06 0.0012 19.1 0.3 2 23 303 324 302 325 0.91 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF791-202 - 467 7.3e-21 73.9 90.0 13 17 0.0037 3 8.2 0.0 2 24 331 353 330 353 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF791-202 - 467 7.3e-21 73.9 90.0 14 17 0.49 4e+02 1.5 1.8 2 12 359 369 358 381 0.74 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF791-202 - 467 7.3e-21 73.9 90.0 15 17 0.00062 0.51 10.7 0.0 2 22 387 407 386 407 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF791-202 - 467 7.3e-21 73.9 90.0 16 17 0.001 0.81 10.0 0.3 2 21 415 434 414 435 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF791-202 - 467 7.3e-21 73.9 90.0 17 17 0.006 4.9 7.6 0.0 2 22 443 463 442 463 0.93 Zinc-finger double-stranded RNA-binding zf-trcl PF13451.6 48 ZNF791-202 - 467 4.8e-19 68.0 73.7 1 14 0.011 9.2 6.3 0.2 3 19 21 37 20 41 0.79 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF791-202 - 467 4.8e-19 68.0 73.7 2 14 0.00012 0.094 12.6 4.5 3 41 49 86 47 89 0.86 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF791-202 - 467 4.8e-19 68.0 73.7 3 14 0.041 34 4.5 0.6 3 14 105 116 103 120 0.88 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF791-202 - 467 4.8e-19 68.0 73.7 4 14 0.0081 6.6 6.7 0.1 3 15 133 145 131 148 0.91 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF791-202 - 467 4.8e-19 68.0 73.7 5 14 7.6e-05 0.062 13.2 0.0 2 16 160 174 159 176 0.93 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF791-202 - 467 4.8e-19 68.0 73.7 6 14 0.014 12 5.9 0.6 3 14 189 200 187 207 0.87 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF791-202 - 467 4.8e-19 68.0 73.7 7 14 0.01 8.5 6.4 0.2 3 14 217 228 215 229 0.89 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF791-202 - 467 4.8e-19 68.0 73.7 8 14 0.014 11 6.0 0.1 3 14 245 256 243 258 0.88 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF791-202 - 467 4.8e-19 68.0 73.7 9 14 0.016 13 5.7 0.0 3 15 273 285 271 288 0.87 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF791-202 - 467 4.8e-19 68.0 73.7 10 14 0.045 37 4.3 0.1 3 15 301 313 299 316 0.89 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF791-202 - 467 4.8e-19 68.0 73.7 11 14 0.00014 0.12 12.3 0.0 2 17 328 343 327 346 0.89 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF791-202 - 467 4.8e-19 68.0 73.7 12 14 0.048 39 4.2 0.7 3 14 357 368 355 371 0.88 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF791-202 - 467 4.8e-19 68.0 73.7 13 14 0.0001 0.082 12.8 2.5 3 41 385 422 383 423 0.87 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF791-202 - 467 4.8e-19 68.0 73.7 14 14 0.0011 0.92 9.5 3.7 3 41 413 450 411 452 0.90 Probable zinc-ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF791-202 - 467 6e-19 67.9 94.2 1 13 0.0061 5 7.3 0.7 6 22 23 39 22 46 0.82 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF791-202 - 467 6e-19 67.9 94.2 2 13 0.0002 0.17 12.1 5.7 6 36 51 88 50 91 0.74 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF791-202 - 467 6e-19 67.9 94.2 3 13 0.003 2.4 8.3 5.7 6 34 79 114 78 117 0.88 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF791-202 - 467 6e-19 67.9 94.2 4 13 0.00052 0.42 10.8 6.9 6 34 107 142 106 146 0.82 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF791-202 - 467 6e-19 67.9 94.2 5 13 0.0003 0.24 11.5 5.5 6 36 163 200 162 203 0.88 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF791-202 - 467 6e-19 67.9 94.2 6 13 0.00016 0.13 12.4 5.6 6 34 191 226 190 231 0.83 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF791-202 - 467 6e-19 67.9 94.2 7 13 1.5e-06 0.0012 18.9 3.1 6 39 219 259 218 260 0.90 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF791-202 - 467 6e-19 67.9 94.2 8 13 0.0011 0.91 9.7 0.3 6 19 247 260 245 268 0.84 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF791-202 - 467 6e-19 67.9 94.2 9 13 5.8e-05 0.048 13.8 3.9 6 34 275 310 274 313 0.91 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF791-202 - 467 6e-19 67.9 94.2 10 13 0.0037 3 8.0 0.1 6 15 331 340 330 354 0.89 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF791-202 - 467 6e-19 67.9 94.2 11 13 0.00028 0.23 11.6 6.6 6 34 359 394 358 397 0.90 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF791-202 - 467 6e-19 67.9 94.2 12 13 5.6e-05 0.046 13.9 3.9 6 34 415 450 414 455 0.72 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF791-202 - 467 6e-19 67.9 94.2 13 13 0.018 15 5.8 0.3 7 18 444 455 436 461 0.78 Zinc ribbon domain Zn_ribbon_SprT PF17283.2 38 ZNF791-202 - 467 2.2e-14 53.0 74.2 1 11 1.7e-05 0.013 15.3 3.5 5 34 23 60 22 63 0.94 SprT-like zinc ribbon domain Zn_ribbon_SprT PF17283.2 38 ZNF791-202 - 467 2.2e-14 53.0 74.2 2 11 5.3e-05 0.043 13.7 4.3 5 37 51 91 50 92 0.95 SprT-like zinc ribbon domain Zn_ribbon_SprT PF17283.2 38 ZNF791-202 - 467 2.2e-14 53.0 74.2 3 11 0.0015 1.2 9.1 3.8 5 32 107 142 99 149 0.93 SprT-like zinc ribbon domain Zn_ribbon_SprT PF17283.2 38 ZNF791-202 - 467 2.2e-14 53.0 74.2 4 11 0.00011 0.088 12.7 2.2 5 36 163 202 162 204 0.93 SprT-like zinc ribbon domain Zn_ribbon_SprT PF17283.2 38 ZNF791-202 - 467 2.2e-14 53.0 74.2 5 11 0.001 0.81 9.6 2.4 5 32 219 254 218 259 0.93 SprT-like zinc ribbon domain Zn_ribbon_SprT PF17283.2 38 ZNF791-202 - 467 2.2e-14 53.0 74.2 6 11 0.00012 0.098 12.6 2.8 5 35 247 285 246 288 0.95 SprT-like zinc ribbon domain Zn_ribbon_SprT PF17283.2 38 ZNF791-202 - 467 2.2e-14 53.0 74.2 7 11 0.00018 0.15 12.0 1.3 5 35 275 313 274 316 0.93 SprT-like zinc ribbon domain Zn_ribbon_SprT PF17283.2 38 ZNF791-202 - 467 2.2e-14 53.0 74.2 8 11 0.00012 0.1 12.5 1.5 5 36 331 370 330 372 0.93 SprT-like zinc ribbon domain Zn_ribbon_SprT PF17283.2 38 ZNF791-202 - 467 2.2e-14 53.0 74.2 9 11 0.052 43 4.1 3.8 5 32 359 394 359 401 0.87 SprT-like zinc ribbon domain Zn_ribbon_SprT PF17283.2 38 ZNF791-202 - 467 2.2e-14 53.0 74.2 10 11 0.00024 0.2 11.6 0.9 5 32 387 422 386 425 0.94 SprT-like zinc ribbon domain Zn_ribbon_SprT PF17283.2 38 ZNF791-202 - 467 2.2e-14 53.0 74.2 11 11 1.9e-05 0.015 15.2 2.1 5 35 415 453 414 456 0.92 SprT-like zinc ribbon domain zf-C2H2_11 PF16622.5 29 ZNF791-202 - 467 2.1e-11 43.3 84.8 1 17 0.75 6.1e+02 0.3 0.7 19 25 5 11 4 12 0.90 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF791-202 - 467 2.1e-11 43.3 84.8 2 17 0.059 48 3.8 0.1 5 23 23 41 20 43 0.91 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF791-202 - 467 2.1e-11 43.3 84.8 3 17 0.1 82 3.1 0.3 5 15 51 61 48 71 0.75 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF791-202 - 467 2.1e-11 43.3 84.8 4 17 0.033 27 4.6 1.4 6 26 80 100 77 101 0.92 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF791-202 - 467 2.1e-11 43.3 84.8 5 17 0.025 20 5.0 1.0 6 23 108 125 105 127 0.87 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF791-202 - 467 2.1e-11 43.3 84.8 6 17 0.0082 6.7 6.6 0.3 7 25 137 155 134 157 0.88 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF791-202 - 467 2.1e-11 43.3 84.8 7 17 0.097 79 3.1 0.1 5 23 163 181 162 185 0.71 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF791-202 - 467 2.1e-11 43.3 84.8 8 17 0.047 38 4.1 1.0 5 26 191 212 188 213 0.81 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF791-202 - 467 2.1e-11 43.3 84.8 9 17 0.0032 2.6 7.9 0.0 5 25 219 239 216 241 0.87 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF791-202 - 467 2.1e-11 43.3 84.8 10 17 0.048 39 4.1 0.1 5 15 247 257 244 261 0.88 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF791-202 - 467 2.1e-11 43.3 84.8 11 17 0.3 2.5e+02 1.6 0.0 6 23 276 293 273 295 0.78 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF791-202 - 467 2.1e-11 43.3 84.8 12 17 0.093 76 3.2 0.1 6 25 304 323 301 325 0.85 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF791-202 - 467 2.1e-11 43.3 84.8 13 17 0.031 25 4.7 0.0 5 23 331 349 328 351 0.79 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF791-202 - 467 2.1e-11 43.3 84.8 14 17 0.21 1.7e+02 2.1 1.0 6 16 360 370 357 378 0.84 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF791-202 - 467 2.1e-11 43.3 84.8 15 17 0.041 33 4.3 0.1 6 26 388 408 385 409 0.91 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF791-202 - 467 2.1e-11 43.3 84.8 16 17 2.2e-05 0.018 14.8 0.7 5 26 415 436 412 437 0.94 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF791-202 - 467 2.1e-11 43.3 84.8 17 17 4.1e-07 0.00034 20.3 0.5 7 26 445 464 442 465 0.94 zinc-finger C2H2-type zf_UBZ PF18439.1 32 ZNF791-202 - 467 3.4e-11 42.5 80.2 1 16 0.054 44 3.8 0.3 3 14 23 34 21 42 0.75 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF791-202 - 467 3.4e-11 42.5 80.2 2 16 0.01 8.1 6.1 0.4 3 13 51 61 49 70 0.80 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF791-202 - 467 3.4e-11 42.5 80.2 3 16 0.016 13 5.5 0.6 3 15 79 91 77 98 0.80 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF791-202 - 467 3.4e-11 42.5 80.2 4 16 0.011 8.9 6.0 0.9 3 15 107 119 105 126 0.83 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF791-202 - 467 3.4e-11 42.5 80.2 5 16 0.0023 1.9 8.2 0.1 3 20 135 153 133 154 0.87 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF791-202 - 467 3.4e-11 42.5 80.2 6 16 0.017 14 5.4 0.1 3 12 163 172 161 178 0.84 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF791-202 - 467 3.4e-11 42.5 80.2 7 16 0.031 25 4.5 1.7 3 18 191 207 189 210 0.76 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF791-202 - 467 3.4e-11 42.5 80.2 8 16 0.0033 2.7 7.7 0.1 3 13 219 229 217 236 0.89 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF791-202 - 467 3.4e-11 42.5 80.2 9 16 0.013 11 5.8 0.2 3 13 247 257 245 260 0.88 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF791-202 - 467 3.4e-11 42.5 80.2 10 16 0.015 12 5.6 0.1 3 12 275 284 273 293 0.86 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF791-202 - 467 3.4e-11 42.5 80.2 11 16 0.13 1e+02 2.6 0.2 3 13 303 313 301 321 0.84 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF791-202 - 467 3.4e-11 42.5 80.2 12 16 0.014 11 5.7 0.0 3 20 331 349 329 350 0.82 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF791-202 - 467 3.4e-11 42.5 80.2 13 16 0.016 13 5.4 1.0 3 15 359 371 357 374 0.86 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF791-202 - 467 3.4e-11 42.5 80.2 14 16 0.02 16 5.2 0.1 3 13 387 397 385 406 0.76 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF791-202 - 467 3.4e-11 42.5 80.2 15 16 0.00071 0.58 9.8 0.3 3 20 415 433 413 434 0.89 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF791-202 - 467 3.4e-11 42.5 80.2 16 16 0.014 11 5.7 0.1 4 20 444 461 442 462 0.80 Ubiquitin-Binding Zinc Finger DUF3268 PF11672.8 118 ZNF791-202 - 467 2.6e-09 37.4 58.9 1 8 3.6 3e+03 -1.5 0.1 27 38 19 30 9 47 0.76 zinc-finger-containing domain DUF3268 PF11672.8 118 ZNF791-202 - 467 2.6e-09 37.4 58.9 2 8 0.0033 2.7 8.4 2.9 2 42 50 90 49 104 0.81 zinc-finger-containing domain DUF3268 PF11672.8 118 ZNF791-202 - 467 2.6e-09 37.4 58.9 3 8 0.00036 0.29 11.5 2.9 2 39 106 143 105 160 0.87 zinc-finger-containing domain DUF3268 PF11672.8 118 ZNF791-202 - 467 2.6e-09 37.4 58.9 4 8 0.00069 0.56 10.5 1.0 3 45 163 205 161 216 0.87 zinc-finger-containing domain DUF3268 PF11672.8 118 ZNF791-202 - 467 2.6e-09 37.4 58.9 5 8 0.00081 0.66 10.3 0.7 2 45 218 267 217 272 0.80 zinc-finger-containing domain DUF3268 PF11672.8 118 ZNF791-202 - 467 2.6e-09 37.4 58.9 6 8 0.0004 0.33 11.3 0.5 2 37 274 309 273 319 0.91 zinc-finger-containing domain DUF3268 PF11672.8 118 ZNF791-202 - 467 2.6e-09 37.4 58.9 7 8 7.8e-05 0.064 13.6 1.5 3 47 331 381 329 384 0.87 zinc-finger-containing domain DUF3268 PF11672.8 118 ZNF791-202 - 467 2.6e-09 37.4 58.9 8 8 0.01 8.1 6.8 2.8 2 45 386 429 385 454 0.87 zinc-finger-containing domain C1_1 PF00130.22 53 ZNF791-202 - 467 2.7e-09 36.7 72.5 1 13 0.0028 2.3 8.2 4.1 8 37 19 59 12 64 0.85 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF791-202 - 467 2.7e-09 36.7 72.5 2 13 2 1.7e+03 -1.0 13.4 9 36 48 86 38 144 0.75 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF791-202 - 467 2.7e-09 36.7 72.5 3 13 0.016 13 5.8 6.4 3 36 155 198 125 200 0.79 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF791-202 - 467 2.7e-09 36.7 72.5 4 13 0.019 15 5.5 6.2 9 36 188 226 180 228 0.82 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF791-202 - 467 2.7e-09 36.7 72.5 5 13 0.00068 0.56 10.1 1.9 9 36 216 254 207 256 0.84 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF791-202 - 467 2.7e-09 36.7 72.5 6 13 0.0014 1.2 9.1 1.4 5 37 241 283 234 285 0.82 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF791-202 - 467 2.7e-09 36.7 72.5 7 13 0.0046 3.8 7.5 0.9 9 36 272 310 263 312 0.81 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF791-202 - 467 2.7e-09 36.7 72.5 8 13 0.0046 3.7 7.5 0.6 9 37 300 339 293 341 0.76 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF791-202 - 467 2.7e-09 36.7 72.5 9 13 0.0033 2.7 8.0 1.6 1 36 321 366 321 371 0.84 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF791-202 - 467 2.7e-09 36.7 72.5 10 13 0.0079 6.5 6.7 2.8 9 36 356 394 348 396 0.83 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF791-202 - 467 2.7e-09 36.7 72.5 11 13 0.0018 1.5 8.8 1.7 9 36 384 422 376 427 0.82 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF791-202 - 467 2.7e-09 36.7 72.5 12 13 0.026 21 5.1 0.3 6 22 409 425 405 435 0.72 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF791-202 - 467 2.7e-09 36.7 72.5 13 13 0.0074 6 6.8 0.4 5 21 436 452 427 465 0.77 Phorbol esters/diacylglycerol binding domain (C1 domain) XPA_N PF01286.18 32 ZNF791-202 - 467 6.7e-09 35.6 81.9 1 16 0.016 13 5.9 0.6 3 12 24 33 22 38 0.86 XPA protein N-terminal XPA_N PF01286.18 32 ZNF791-202 - 467 6.7e-09 35.6 81.9 2 16 0.04 33 4.6 0.1 3 11 52 60 50 62 0.90 XPA protein N-terminal XPA_N PF01286.18 32 ZNF791-202 - 467 6.7e-09 35.6 81.9 3 16 0.24 1.9e+02 2.2 1.0 3 12 80 89 78 94 0.84 XPA protein N-terminal XPA_N PF01286.18 32 ZNF791-202 - 467 6.7e-09 35.6 81.9 4 16 0.079 64 3.7 1.8 3 14 108 119 106 120 0.86 XPA protein N-terminal XPA_N PF01286.18 32 ZNF791-202 - 467 6.7e-09 35.6 81.9 5 16 0.02 16 5.6 0.0 4 11 137 144 134 150 0.90 XPA protein N-terminal XPA_N PF01286.18 32 ZNF791-202 - 467 6.7e-09 35.6 81.9 6 16 0.0083 6.8 6.8 0.2 3 11 164 172 162 179 0.86 XPA protein N-terminal XPA_N PF01286.18 32 ZNF791-202 - 467 6.7e-09 35.6 81.9 7 16 0.043 35 4.5 0.9 3 13 192 202 190 204 0.85 XPA protein N-terminal XPA_N PF01286.18 32 ZNF791-202 - 467 6.7e-09 35.6 81.9 8 16 0.011 9 6.4 0.3 3 11 220 228 218 230 0.88 XPA protein N-terminal XPA_N PF01286.18 32 ZNF791-202 - 467 6.7e-09 35.6 81.9 9 16 0.005 4.1 7.5 0.1 3 12 248 257 246 264 0.85 XPA protein N-terminal XPA_N PF01286.18 32 ZNF791-202 - 467 6.7e-09 35.6 81.9 10 16 0.029 24 5.1 0.2 3 11 276 284 274 286 0.89 XPA protein N-terminal XPA_N PF01286.18 32 ZNF791-202 - 467 6.7e-09 35.6 81.9 11 16 0.032 26 5.0 0.3 3 11 304 312 302 314 0.88 XPA protein N-terminal XPA_N PF01286.18 32 ZNF791-202 - 467 6.7e-09 35.6 81.9 12 16 0.17 1.4e+02 2.7 0.1 3 11 332 340 330 342 0.87 XPA protein N-terminal XPA_N PF01286.18 32 ZNF791-202 - 467 6.7e-09 35.6 81.9 13 16 0.0096 7.8 6.6 0.5 3 16 360 373 358 377 0.84 XPA protein N-terminal XPA_N PF01286.18 32 ZNF791-202 - 467 6.7e-09 35.6 81.9 14 16 0.012 10 6.3 0.1 3 11 388 396 386 398 0.90 XPA protein N-terminal XPA_N PF01286.18 32 ZNF791-202 - 467 6.7e-09 35.6 81.9 15 16 0.0079 6.4 6.9 0.1 3 11 416 424 414 429 0.90 XPA protein N-terminal XPA_N PF01286.18 32 ZNF791-202 - 467 6.7e-09 35.6 81.9 16 16 0.0073 5.9 7.0 0.2 2 14 443 455 442 459 0.89 XPA protein N-terminal C1_4 PF07975.12 55 ZNF791-202 - 467 2.1e-07 31.1 78.3 1 14 0.03 24 5.2 0.4 10 35 7 32 3 34 0.78 TFIIH C1-like domain C1_4 PF07975.12 55 ZNF791-202 - 467 2.1e-07 31.1 78.3 2 14 0.14 1.1e+02 3.1 5.8 1 35 24 60 24 73 0.79 TFIIH C1-like domain C1_4 PF07975.12 55 ZNF791-202 - 467 2.1e-07 31.1 78.3 3 14 0.024 19 5.6 4.0 2 49 53 102 52 105 0.79 TFIIH C1-like domain C1_4 PF07975.12 55 ZNF791-202 - 467 2.1e-07 31.1 78.3 4 14 0.0022 1.8 8.9 4.2 2 49 81 130 80 133 0.77 TFIIH C1-like domain C1_4 PF07975.12 55 ZNF791-202 - 467 2.1e-07 31.1 78.3 5 14 0.0026 2.1 8.6 1.7 2 49 137 186 136 189 0.81 TFIIH C1-like domain C1_4 PF07975.12 55 ZNF791-202 - 467 2.1e-07 31.1 78.3 6 14 0.00045 0.37 11.1 3.0 2 49 165 214 164 216 0.79 TFIIH C1-like domain C1_4 PF07975.12 55 ZNF791-202 - 467 2.1e-07 31.1 78.3 7 14 0.19 1.5e+02 2.7 3.4 2 48 221 269 220 272 0.67 TFIIH C1-like domain C1_4 PF07975.12 55 ZNF791-202 - 467 2.1e-07 31.1 78.3 8 14 0.0019 1.5 9.1 2.0 2 49 249 298 248 300 0.80 TFIIH C1-like domain C1_4 PF07975.12 55 ZNF791-202 - 467 2.1e-07 31.1 78.3 9 14 0.029 23 5.3 2.5 2 35 277 312 276 314 0.73 TFIIH C1-like domain C1_4 PF07975.12 55 ZNF791-202 - 467 2.1e-07 31.1 78.3 10 14 0.0034 2.8 8.2 1.2 1 49 304 354 304 356 0.81 TFIIH C1-like domain C1_4 PF07975.12 55 ZNF791-202 - 467 2.1e-07 31.1 78.3 11 14 0.0068 5.6 7.3 3.4 2 49 333 382 332 384 0.78 TFIIH C1-like domain C1_4 PF07975.12 55 ZNF791-202 - 467 2.1e-07 31.1 78.3 12 14 0.43 3.5e+02 1.5 5.0 2 35 361 396 360 411 0.71 TFIIH C1-like domain C1_4 PF07975.12 55 ZNF791-202 - 467 2.1e-07 31.1 78.3 13 14 0.026 21 5.4 3.4 2 49 389 438 388 441 0.75 TFIIH C1-like domain C1_4 PF07975.12 55 ZNF791-202 - 467 2.1e-07 31.1 78.3 14 14 0.13 1.1e+02 3.2 2.4 2 49 417 466 416 467 0.69 TFIIH C1-like domain # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF791-202.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF791-202.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF791-202.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF791-202.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF791-202.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:14:38 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF791-203.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF791-203.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF791-203.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF791-203.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF791-203.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:14:38 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF791-204.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF791-204.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF791-204.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF791-204.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF791-204.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:14:39 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF791-205.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF791-205.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF791-205.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF791-205.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF791-205.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:14:39 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF791-206.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF791-206.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF791-206.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF791-206.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF791-206.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:14:39 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZNF79-201 - 498 6.4e-100 323.5 68.3 1 12 0.00046 0.41 11.2 0.5 13 25 191 203 175 204 0.89 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF79-201 - 498 6.4e-100 323.5 68.3 2 12 8.7e-13 7.8e-10 38.7 0.4 1 25 207 231 207 232 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF79-201 - 498 6.4e-100 323.5 68.3 3 12 3.2e-11 2.8e-08 33.8 0.1 2 25 236 259 235 260 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF79-201 - 498 6.4e-100 323.5 68.3 4 12 2.6e-12 2.3e-09 37.2 1.0 1 25 263 287 263 288 0.97 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF79-201 - 498 6.4e-100 323.5 68.3 5 12 1.5e-12 1.3e-09 38.0 0.3 1 26 291 316 291 316 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF79-201 - 498 6.4e-100 323.5 68.3 6 12 1.1e-12 1e-09 38.4 1.3 1 25 319 343 319 344 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF79-201 - 498 6.4e-100 323.5 68.3 7 12 1.3e-10 1.2e-07 31.8 0.1 4 25 350 371 347 372 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF79-201 - 498 6.4e-100 323.5 68.3 8 12 7.9e-13 7.1e-10 38.9 0.8 1 25 375 399 375 400 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF79-201 - 498 6.4e-100 323.5 68.3 9 12 4.3e-10 3.9e-07 30.2 0.9 2 25 404 427 403 428 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF79-201 - 498 6.4e-100 323.5 68.3 10 12 7.6e-11 6.8e-08 32.6 0.2 1 25 431 455 431 456 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF79-201 - 498 6.4e-100 323.5 68.3 11 12 1.1e-11 1e-08 35.2 0.8 1 25 459 483 459 484 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF79-201 - 498 6.4e-100 323.5 68.3 12 12 0.24 2.2e+02 2.5 0.1 1 12 487 498 487 498 0.86 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZNF79-201 - 498 1.5e-68 223.6 77.3 1 11 2.7e-07 0.00024 21.4 2.3 1 23 193 215 193 215 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF79-201 - 498 1.5e-68 223.6 77.3 2 11 2.8e-09 2.5e-06 27.6 0.2 1 23 221 243 221 243 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF79-201 - 498 1.5e-68 223.6 77.3 3 11 4.2e-10 3.8e-07 30.2 0.9 1 23 249 271 249 271 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF79-201 - 498 1.5e-68 223.6 77.3 4 11 5.4e-08 4.8e-05 23.6 1.1 1 23 277 299 277 299 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF79-201 - 498 1.5e-68 223.6 77.3 5 11 8.3e-10 7.5e-07 29.3 1.7 1 23 305 327 305 327 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF79-201 - 498 1.5e-68 223.6 77.3 6 11 3.3e-07 0.0003 21.1 1.3 1 23 333 355 333 355 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF79-201 - 498 1.5e-68 223.6 77.3 7 11 8.3e-09 7.4e-06 26.1 0.3 1 23 361 383 361 383 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF79-201 - 498 1.5e-68 223.6 77.3 8 11 3.6e-09 3.2e-06 27.3 0.5 1 23 389 411 389 411 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF79-201 - 498 1.5e-68 223.6 77.3 9 11 2e-07 0.00018 21.8 1.0 1 23 417 439 417 439 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF79-201 - 498 1.5e-68 223.6 77.3 10 11 4.2e-09 3.7e-06 27.1 0.4 1 23 445 467 445 467 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF79-201 - 498 1.5e-68 223.6 77.3 11 11 2.2e-06 0.0019 18.5 2.0 1 23 473 495 473 495 0.98 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZNF79-201 - 498 9.2e-40 131.9 81.1 1 12 2.8 2.5e+03 -0.2 0.1 2 21 171 190 170 192 0.81 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF79-201 - 498 9.2e-40 131.9 81.1 2 12 4.7e-06 0.0042 17.8 2.5 1 23 193 215 193 216 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF79-201 - 498 9.2e-40 131.9 81.1 3 12 4.5e-06 0.0041 17.9 0.4 1 23 221 243 221 244 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF79-201 - 498 9.2e-40 131.9 81.1 4 12 2.4e-06 0.0021 18.7 0.6 1 23 249 271 249 272 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF79-201 - 498 9.2e-40 131.9 81.1 5 12 8.2e-06 0.0074 17.0 1.4 1 23 277 299 277 300 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF79-201 - 498 9.2e-40 131.9 81.1 6 12 3.5e-05 0.031 15.1 1.0 1 23 305 327 305 328 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF79-201 - 498 9.2e-40 131.9 81.1 7 12 1.9e-05 0.017 15.9 1.5 1 23 333 355 333 356 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF79-201 - 498 9.2e-40 131.9 81.1 8 12 3.7e-05 0.033 15.0 0.3 1 23 361 383 361 384 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF79-201 - 498 9.2e-40 131.9 81.1 9 12 3.8e-06 0.0034 18.1 0.5 1 23 389 411 389 412 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF79-201 - 498 9.2e-40 131.9 81.1 10 12 3.5e-05 0.031 15.1 0.9 1 23 417 439 417 440 0.88 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF79-201 - 498 9.2e-40 131.9 81.1 11 12 8.8e-06 0.0079 17.0 0.4 1 23 445 467 445 468 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF79-201 - 498 9.2e-40 131.9 81.1 12 12 7.8e-06 0.007 17.1 1.8 1 23 473 495 473 496 0.96 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF79-201 - 498 1.1e-20 73.1 84.2 1 11 0.00014 0.13 12.3 4.8 2 24 193 215 193 218 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF79-201 - 498 1.1e-20 73.1 84.2 2 11 7.6e-05 0.068 13.2 0.7 2 22 221 241 221 245 0.87 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF79-201 - 498 1.1e-20 73.1 84.2 3 11 1.9e-05 0.017 15.1 1.3 2 24 249 271 249 274 0.95 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF79-201 - 498 1.1e-20 73.1 84.2 4 11 0.0021 1.8 8.6 1.2 2 20 277 295 277 301 0.79 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF79-201 - 498 1.1e-20 73.1 84.2 5 11 0.00062 0.56 10.3 1.4 2 24 305 327 305 330 0.95 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF79-201 - 498 1.1e-20 73.1 84.2 6 11 0.00037 0.34 11.0 2.1 2 20 333 351 333 357 0.80 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF79-201 - 498 1.1e-20 73.1 84.2 7 11 0.0015 1.3 9.1 0.6 2 24 361 383 361 386 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF79-201 - 498 1.1e-20 73.1 84.2 8 11 3.2e-06 0.0029 17.6 0.9 2 24 389 411 389 414 0.95 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF79-201 - 498 1.1e-20 73.1 84.2 9 11 0.0041 3.7 7.7 0.9 2 20 417 435 417 439 0.82 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF79-201 - 498 1.1e-20 73.1 84.2 10 11 0.00056 0.51 10.4 0.7 2 13 445 456 445 467 0.79 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF79-201 - 498 1.1e-20 73.1 84.2 11 11 0.00064 0.58 10.2 0.6 2 12 473 483 473 483 0.94 C2H2-type zinc finger Zn-ribbon_8 PF09723.10 40 ZNF79-201 - 498 3.4e-11 43.1 65.6 1 11 0.00047 0.42 10.8 7.0 6 35 193 229 192 233 0.90 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF79-201 - 498 3.4e-11 43.1 65.6 2 11 5.8e-05 0.052 13.7 4.5 6 35 221 257 220 261 0.91 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF79-201 - 498 3.4e-11 43.1 65.6 3 11 0.001 0.9 9.7 5.1 6 34 249 284 248 287 0.91 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF79-201 - 498 3.4e-11 43.1 65.6 4 11 0.001 0.89 9.7 6.8 6 36 277 314 275 317 0.92 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF79-201 - 498 3.4e-11 43.1 65.6 5 11 0.0069 6.2 7.0 0.3 6 17 305 316 303 328 0.84 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF79-201 - 498 3.4e-11 43.1 65.6 6 11 6.5e-05 0.058 13.5 4.3 6 35 333 369 332 373 0.92 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF79-201 - 498 3.4e-11 43.1 65.6 7 11 3.5e-05 0.031 14.4 2.7 6 35 361 397 359 401 0.88 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF79-201 - 498 3.4e-11 43.1 65.6 8 11 6.6e-05 0.059 13.5 4.0 6 34 389 424 388 428 0.91 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF79-201 - 498 3.4e-11 43.1 65.6 9 11 0.011 9.8 6.4 0.5 6 16 417 427 416 435 0.83 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF79-201 - 498 3.4e-11 43.1 65.6 10 11 0.00017 0.15 12.2 5.8 6 36 445 482 444 484 0.86 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF79-201 - 498 3.4e-11 43.1 65.6 11 11 0.027 24 5.2 1.3 6 16 473 483 471 492 0.86 Zinc ribbon domain zf_UBZ PF18439.1 32 ZNF79-201 - 498 6.4e-11 41.6 52.9 1 11 0.041 36 4.0 0.5 3 13 193 203 191 212 0.79 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF79-201 - 498 6.4e-11 41.6 52.9 2 11 0.00044 0.39 10.3 0.3 3 21 221 240 219 240 0.89 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF79-201 - 498 6.4e-11 41.6 52.9 3 11 0.0025 2.2 7.9 0.1 3 20 249 267 247 268 0.84 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF79-201 - 498 6.4e-11 41.6 52.9 4 11 0.037 33 4.2 0.9 3 15 277 289 275 296 0.76 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF79-201 - 498 6.4e-11 41.6 52.9 5 11 0.0051 4.6 6.9 0.1 3 20 305 323 303 324 0.80 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF79-201 - 498 6.4e-11 41.6 52.9 6 11 0.0076 6.8 6.4 0.6 3 13 333 343 331 352 0.84 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF79-201 - 498 6.4e-11 41.6 52.9 7 11 0.0082 7.3 6.3 0.0 3 21 361 380 359 380 0.85 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF79-201 - 498 6.4e-11 41.6 52.9 8 11 0.0017 1.5 8.5 0.1 3 15 389 401 387 408 0.84 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF79-201 - 498 6.4e-11 41.6 52.9 9 11 0.0027 2.4 7.8 0.2 3 16 417 431 415 436 0.82 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF79-201 - 498 6.4e-11 41.6 52.9 10 11 0.0044 3.9 7.1 0.3 3 21 445 464 443 464 0.89 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF79-201 - 498 6.4e-11 41.6 52.9 11 11 0.01 9.2 6.0 0.6 3 15 473 485 471 492 0.79 Ubiquitin-Binding Zinc Finger zf-C2H2_jaz PF12171.8 27 ZNF79-201 - 498 3.7e-10 39.8 60.0 1 11 0.68 6.1e+02 0.9 3.0 2 24 193 215 192 215 0.90 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF79-201 - 498 3.7e-10 39.8 60.0 2 11 0.0026 2.3 8.6 0.1 2 22 221 241 220 241 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF79-201 - 498 3.7e-10 39.8 60.0 3 11 0.0065 5.8 7.3 0.3 2 24 249 271 248 271 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF79-201 - 498 3.7e-10 39.8 60.0 4 11 0.0013 1.2 9.5 0.5 2 22 277 297 276 297 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF79-201 - 498 3.7e-10 39.8 60.0 5 11 0.00071 0.64 10.4 0.3 2 24 305 327 304 327 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF79-201 - 498 3.7e-10 39.8 60.0 6 11 0.65 5.8e+02 1.0 1.5 2 12 333 343 332 353 0.75 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF79-201 - 498 3.7e-10 39.8 60.0 7 11 0.00041 0.37 11.2 0.1 2 24 361 383 360 383 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF79-201 - 498 3.7e-10 39.8 60.0 8 11 0.018 16 5.9 0.6 2 24 389 411 388 411 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF79-201 - 498 3.7e-10 39.8 60.0 9 11 0.0054 4.9 7.6 0.1 2 20 417 435 416 435 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF79-201 - 498 3.7e-10 39.8 60.0 10 11 0.0033 2.9 8.3 0.2 2 22 445 465 444 465 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF79-201 - 498 3.7e-10 39.8 60.0 11 11 0.015 13 6.2 0.2 2 22 473 493 472 493 0.92 Zinc-finger double-stranded RNA-binding zinc_ribbon_15 PF17032.5 86 ZNF79-201 - 498 9.1e-09 36.0 51.5 1 6 0.0019 1.7 9.4 4.3 32 78 188 233 174 236 0.85 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF79-201 - 498 9.1e-09 36.0 51.5 2 6 0.00017 0.15 12.8 3.4 29 75 240 286 235 292 0.87 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF79-201 - 498 9.1e-09 36.0 51.5 3 6 0.00034 0.3 11.8 3.0 30 76 297 343 291 348 0.84 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF79-201 - 498 9.1e-09 36.0 51.5 4 6 3.9e-05 0.035 14.8 2.7 24 79 347 402 340 407 0.89 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF79-201 - 498 9.1e-09 36.0 51.5 5 6 0.4 3.6e+02 2.0 0.1 33 51 412 430 404 437 0.67 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF79-201 - 498 9.1e-09 36.0 51.5 6 6 0.0003 0.27 12.0 3.0 34 81 441 488 432 491 0.86 zinc-ribbon family zf-C2H2_11 PF16622.5 29 ZNF79-201 - 498 1e-08 34.8 57.9 1 11 0.01 9.2 6.1 2.3 7 23 195 211 193 213 0.94 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF79-201 - 498 1e-08 34.8 57.9 2 11 0.00065 0.58 10.0 0.5 6 26 222 242 219 243 0.93 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF79-201 - 498 1e-08 34.8 57.9 3 11 0.00018 0.17 11.7 0.1 5 24 249 268 246 270 0.91 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF79-201 - 498 1e-08 34.8 57.9 4 11 0.096 86 3.0 0.4 5 26 277 298 274 299 0.89 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF79-201 - 498 1e-08 34.8 57.9 5 11 0.77 6.9e+02 0.1 0.1 6 17 306 317 304 325 0.72 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF79-201 - 498 1e-08 34.8 57.9 6 11 0.048 43 4.0 0.8 5 16 333 344 330 355 0.77 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF79-201 - 498 1e-08 34.8 57.9 7 11 0.014 13 5.7 0.1 5 23 361 379 358 382 0.87 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF79-201 - 498 1e-08 34.8 57.9 8 11 0.022 20 5.1 0.1 5 17 389 401 386 408 0.82 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF79-201 - 498 1e-08 34.8 57.9 9 11 0.00019 0.17 11.7 0.2 5 26 417 438 414 439 0.92 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF79-201 - 498 1e-08 34.8 57.9 10 11 0.00038 0.34 10.7 0.2 6 26 446 466 443 467 0.93 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF79-201 - 498 1e-08 34.8 57.9 11 11 0.28 2.5e+02 1.6 1.0 6 23 474 491 472 494 0.81 zinc-finger C2H2-type XPA_N PF01286.18 32 ZNF79-201 - 498 3.4e-08 33.4 54.7 1 11 0.042 38 4.4 0.4 4 11 195 202 192 208 0.90 XPA protein N-terminal XPA_N PF01286.18 32 ZNF79-201 - 498 3.4e-08 33.4 54.7 2 11 0.0032 2.9 8.0 0.6 3 14 222 233 220 236 0.92 XPA protein N-terminal XPA_N PF01286.18 32 ZNF79-201 - 498 3.4e-08 33.4 54.7 3 11 0.037 33 4.6 0.1 3 12 250 259 248 261 0.88 XPA protein N-terminal XPA_N PF01286.18 32 ZNF79-201 - 498 3.4e-08 33.4 54.7 4 11 0.015 13 5.9 0.7 3 13 278 288 276 295 0.87 XPA protein N-terminal XPA_N PF01286.18 32 ZNF79-201 - 498 3.4e-08 33.4 54.7 5 11 0.014 12 6.0 0.1 3 14 306 317 304 323 0.86 XPA protein N-terminal XPA_N PF01286.18 32 ZNF79-201 - 498 3.4e-08 33.4 54.7 6 11 0.017 15 5.7 0.1 3 11 334 342 332 344 0.89 XPA protein N-terminal XPA_N PF01286.18 32 ZNF79-201 - 498 3.4e-08 33.4 54.7 7 11 0.03 27 4.9 0.0 3 14 362 373 360 379 0.86 XPA protein N-terminal XPA_N PF01286.18 32 ZNF79-201 - 498 3.4e-08 33.4 54.7 8 11 0.0023 2 8.5 0.4 3 14 390 401 388 402 0.91 XPA protein N-terminal XPA_N PF01286.18 32 ZNF79-201 - 498 3.4e-08 33.4 54.7 9 11 0.017 15 5.7 0.4 3 14 418 429 416 432 0.90 XPA protein N-terminal XPA_N PF01286.18 32 ZNF79-201 - 498 3.4e-08 33.4 54.7 10 11 0.0025 2.3 8.4 0.3 3 14 446 457 444 462 0.91 XPA protein N-terminal XPA_N PF01286.18 32 ZNF79-201 - 498 3.4e-08 33.4 54.7 11 11 0.035 32 4.7 1.6 3 13 474 484 472 486 0.85 XPA protein N-terminal # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF79-201.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF79-201.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF79-201.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF79-201.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF79-201.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:14:40 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZNF79-202 - 474 3.2e-100 324.5 68.3 1 12 0.00048 0.39 11.2 0.5 13 25 167 179 151 180 0.89 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF79-202 - 474 3.2e-100 324.5 68.3 2 12 9e-13 7.3e-10 38.8 0.4 1 25 183 207 183 208 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF79-202 - 474 3.2e-100 324.5 68.3 3 12 3.3e-11 2.7e-08 33.9 0.1 2 25 212 235 211 236 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF79-202 - 474 3.2e-100 324.5 68.3 4 12 2.7e-12 2.2e-09 37.3 1.0 1 25 239 263 239 264 0.97 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF79-202 - 474 3.2e-100 324.5 68.3 5 12 1.5e-12 1.2e-09 38.1 0.3 1 26 267 292 267 292 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF79-202 - 474 3.2e-100 324.5 68.3 6 12 1.2e-12 9.5e-10 38.5 1.3 1 25 295 319 295 320 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF79-202 - 474 3.2e-100 324.5 68.3 7 12 1.4e-10 1.1e-07 31.9 0.1 4 25 326 347 323 348 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF79-202 - 474 3.2e-100 324.5 68.3 8 12 8.2e-13 6.7e-10 38.9 0.8 1 25 351 375 351 376 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF79-202 - 474 3.2e-100 324.5 68.3 9 12 4.5e-10 3.7e-07 30.3 0.9 2 25 380 403 379 404 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF79-202 - 474 3.2e-100 324.5 68.3 10 12 7.9e-11 6.4e-08 32.7 0.2 1 25 407 431 407 432 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF79-202 - 474 3.2e-100 324.5 68.3 11 12 1.2e-11 9.6e-09 35.3 0.8 1 25 435 459 435 460 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF79-202 - 474 3.2e-100 324.5 68.3 12 12 0.25 2.1e+02 2.6 0.1 1 12 463 474 463 474 0.86 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZNF79-202 - 474 8e-69 224.5 77.3 1 11 2.8e-07 0.00023 21.4 2.3 1 23 169 191 169 191 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF79-202 - 474 8e-69 224.5 77.3 2 11 2.9e-09 2.4e-06 27.7 0.2 1 23 197 219 197 219 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF79-202 - 474 8e-69 224.5 77.3 3 11 4.3e-10 3.5e-07 30.3 0.9 1 23 225 247 225 247 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF79-202 - 474 8e-69 224.5 77.3 4 11 5.6e-08 4.5e-05 23.7 1.1 1 23 253 275 253 275 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF79-202 - 474 8e-69 224.5 77.3 5 11 8.6e-10 7e-07 29.4 1.7 1 23 281 303 281 303 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF79-202 - 474 8e-69 224.5 77.3 6 11 3.4e-07 0.00028 21.2 1.3 1 23 309 331 309 331 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF79-202 - 474 8e-69 224.5 77.3 7 11 8.6e-09 7e-06 26.2 0.3 1 23 337 359 337 359 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF79-202 - 474 8e-69 224.5 77.3 8 11 3.7e-09 3e-06 27.4 0.5 1 23 365 387 365 387 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF79-202 - 474 8e-69 224.5 77.3 9 11 2e-07 0.00017 21.9 1.0 1 23 393 415 393 415 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF79-202 - 474 8e-69 224.5 77.3 10 11 4.3e-09 3.5e-06 27.2 0.4 1 23 421 443 421 443 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF79-202 - 474 8e-69 224.5 77.3 11 11 2.2e-06 0.0018 18.6 2.0 1 23 449 471 449 471 0.98 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZNF79-202 - 474 4.5e-40 132.8 81.1 1 12 2.9 2.3e+03 -0.1 0.1 2 21 147 166 146 168 0.81 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF79-202 - 474 4.5e-40 132.8 81.1 2 12 4.8e-06 0.0039 17.9 2.5 1 23 169 191 169 192 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF79-202 - 474 4.5e-40 132.8 81.1 3 12 4.7e-06 0.0038 17.9 0.4 1 23 197 219 197 220 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF79-202 - 474 4.5e-40 132.8 81.1 4 12 2.5e-06 0.002 18.8 0.6 1 23 225 247 225 248 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF79-202 - 474 4.5e-40 132.8 81.1 5 12 8.5e-06 0.0069 17.1 1.4 1 23 253 275 253 276 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF79-202 - 474 4.5e-40 132.8 81.1 6 12 3.6e-05 0.03 15.2 1.0 1 23 281 303 281 304 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF79-202 - 474 4.5e-40 132.8 81.1 7 12 2e-05 0.016 16.0 1.5 1 23 309 331 309 332 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF79-202 - 474 4.5e-40 132.8 81.1 8 12 3.8e-05 0.031 15.1 0.3 1 23 337 359 337 360 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF79-202 - 474 4.5e-40 132.8 81.1 9 12 3.9e-06 0.0032 18.2 0.5 1 23 365 387 365 388 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF79-202 - 474 4.5e-40 132.8 81.1 10 12 3.6e-05 0.029 15.2 0.9 1 23 393 415 393 416 0.88 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF79-202 - 474 4.5e-40 132.8 81.1 11 12 9.1e-06 0.0074 17.0 0.4 1 23 421 443 421 444 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF79-202 - 474 4.5e-40 132.8 81.1 12 12 8e-06 0.0066 17.2 1.8 1 23 449 471 449 472 0.96 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF79-202 - 474 5.9e-21 74.0 84.2 1 11 0.00015 0.12 12.4 4.8 2 24 169 191 169 194 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF79-202 - 474 5.9e-21 74.0 84.2 2 11 7.9e-05 0.064 13.3 0.7 2 22 197 217 197 221 0.87 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF79-202 - 474 5.9e-21 74.0 84.2 3 11 2e-05 0.016 15.2 1.3 2 24 225 247 225 250 0.95 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF79-202 - 474 5.9e-21 74.0 84.2 4 11 0.0021 1.7 8.7 1.2 2 20 253 271 253 277 0.79 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF79-202 - 474 5.9e-21 74.0 84.2 5 11 0.00064 0.52 10.4 1.4 2 24 281 303 281 306 0.95 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF79-202 - 474 5.9e-21 74.0 84.2 6 11 0.00039 0.32 11.1 2.1 2 20 309 327 309 333 0.80 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF79-202 - 474 5.9e-21 74.0 84.2 7 11 0.0016 1.3 9.1 0.6 2 24 337 359 337 362 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF79-202 - 474 5.9e-21 74.0 84.2 8 11 3.4e-06 0.0027 17.6 0.9 2 24 365 387 365 390 0.95 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF79-202 - 474 5.9e-21 74.0 84.2 9 11 0.0043 3.5 7.7 0.9 2 20 393 411 393 415 0.82 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF79-202 - 474 5.9e-21 74.0 84.2 10 11 0.00059 0.48 10.5 0.7 2 13 421 432 421 443 0.79 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF79-202 - 474 5.9e-21 74.0 84.2 11 11 0.00067 0.54 10.3 0.6 2 12 449 459 449 459 0.94 C2H2-type zinc finger Zn-ribbon_8 PF09723.10 40 ZNF79-202 - 474 3.4e-11 43.1 66.3 1 11 0.00045 0.36 11.0 7.0 6 35 169 205 167 209 0.91 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF79-202 - 474 3.4e-11 43.1 66.3 2 11 6e-05 0.049 13.8 4.6 6 35 197 233 195 237 0.91 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF79-202 - 474 3.4e-11 43.1 66.3 3 11 0.001 0.85 9.8 5.1 6 34 225 260 224 263 0.91 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF79-202 - 474 3.4e-11 43.1 66.3 4 11 0.0011 0.88 9.7 6.8 6 36 253 290 252 293 0.91 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF79-202 - 474 3.4e-11 43.1 66.3 5 11 0.0075 6.1 7.0 0.3 6 17 281 292 280 303 0.83 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF79-202 - 474 3.4e-11 43.1 66.3 6 11 8.7e-05 0.071 13.2 4.6 6 35 309 345 308 349 0.92 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF79-202 - 474 3.4e-11 43.1 66.3 7 11 6.2e-05 0.051 13.7 2.9 6 34 337 372 335 374 0.89 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF79-202 - 474 3.4e-11 43.1 66.3 8 11 7.2e-05 0.059 13.5 4.0 6 34 365 400 364 404 0.91 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF79-202 - 474 3.4e-11 43.1 66.3 9 11 0.011 9.4 6.5 0.6 6 16 393 403 392 411 0.83 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF79-202 - 474 3.4e-11 43.1 66.3 10 11 0.00017 0.14 12.3 5.7 6 36 421 458 420 460 0.86 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF79-202 - 474 3.4e-11 43.1 66.3 11 11 0.028 23 5.2 1.3 6 16 449 459 447 468 0.86 Zinc ribbon domain zf_UBZ PF18439.1 32 ZNF79-202 - 474 3.5e-11 42.5 52.9 1 11 0.042 34 4.1 0.5 3 13 169 179 167 188 0.79 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF79-202 - 474 3.5e-11 42.5 52.9 2 11 0.00046 0.37 10.4 0.3 3 21 197 216 195 216 0.89 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF79-202 - 474 3.5e-11 42.5 52.9 3 11 0.0026 2.1 8.0 0.1 3 20 225 243 223 244 0.84 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF79-202 - 474 3.5e-11 42.5 52.9 4 11 0.038 31 4.3 0.9 3 15 253 265 251 272 0.76 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF79-202 - 474 3.5e-11 42.5 52.9 5 11 0.0053 4.3 7.0 0.1 3 20 281 299 279 300 0.81 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF79-202 - 474 3.5e-11 42.5 52.9 6 11 0.0079 6.5 6.5 0.6 3 13 309 319 307 328 0.84 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF79-202 - 474 3.5e-11 42.5 52.9 7 11 0.0085 6.9 6.4 0.0 3 21 337 356 335 356 0.85 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF79-202 - 474 3.5e-11 42.5 52.9 8 11 0.0018 1.4 8.5 0.1 3 15 365 377 363 384 0.84 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF79-202 - 474 3.5e-11 42.5 52.9 9 11 0.0028 2.3 7.9 0.2 3 16 393 407 391 412 0.82 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF79-202 - 474 3.5e-11 42.5 52.9 10 11 0.0046 3.7 7.2 0.3 3 21 421 440 419 440 0.89 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF79-202 - 474 3.5e-11 42.5 52.9 11 11 0.011 8.7 6.0 0.6 3 15 449 461 447 468 0.79 Ubiquitin-Binding Zinc Finger zf-C2H2_jaz PF12171.8 27 ZNF79-202 - 474 1.9e-10 40.7 60.0 1 11 0.71 5.8e+02 1.0 3.0 2 24 169 191 168 191 0.90 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF79-202 - 474 1.9e-10 40.7 60.0 2 11 0.0027 2.2 8.7 0.1 2 22 197 217 196 217 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF79-202 - 474 1.9e-10 40.7 60.0 3 11 0.0067 5.5 7.4 0.3 2 24 225 247 224 247 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF79-202 - 474 1.9e-10 40.7 60.0 4 11 0.0014 1.1 9.6 0.5 2 22 253 273 252 273 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF79-202 - 474 1.9e-10 40.7 60.0 5 11 0.00074 0.6 10.5 0.3 2 24 281 303 280 303 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF79-202 - 474 1.9e-10 40.7 60.0 6 11 0.67 5.5e+02 1.0 1.5 2 12 309 319 308 329 0.75 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF79-202 - 474 1.9e-10 40.7 60.0 7 11 0.00042 0.34 11.2 0.1 2 24 337 359 336 359 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF79-202 - 474 1.9e-10 40.7 60.0 8 11 0.019 15 6.0 0.6 2 24 365 387 364 387 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF79-202 - 474 1.9e-10 40.7 60.0 9 11 0.0056 4.6 7.6 0.1 2 20 393 411 392 411 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF79-202 - 474 1.9e-10 40.7 60.0 10 11 0.0034 2.8 8.3 0.2 2 22 421 441 420 441 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF79-202 - 474 1.9e-10 40.7 60.0 11 11 0.015 12 6.3 0.2 2 22 449 469 448 469 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_11 PF16622.5 29 ZNF79-202 - 474 5.6e-09 35.6 57.9 1 11 0.011 8.7 6.2 2.3 7 23 171 187 169 189 0.94 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF79-202 - 474 5.6e-09 35.6 57.9 2 11 0.00067 0.55 10.0 0.5 6 26 198 218 195 219 0.93 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF79-202 - 474 5.6e-09 35.6 57.9 3 11 0.00019 0.16 11.8 0.1 5 24 225 244 222 246 0.91 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF79-202 - 474 5.6e-09 35.6 57.9 4 11 0.099 81 3.1 0.4 5 26 253 274 250 275 0.89 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF79-202 - 474 5.6e-09 35.6 57.9 5 11 0.8 6.5e+02 0.2 0.1 6 17 282 293 280 301 0.72 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF79-202 - 474 5.6e-09 35.6 57.9 6 11 0.049 40 4.1 0.8 5 16 309 320 306 331 0.77 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF79-202 - 474 5.6e-09 35.6 57.9 7 11 0.015 12 5.8 0.1 5 23 337 355 334 358 0.87 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF79-202 - 474 5.6e-09 35.6 57.9 8 11 0.023 19 5.1 0.1 5 17 365 377 362 384 0.82 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF79-202 - 474 5.6e-09 35.6 57.9 9 11 0.0002 0.16 11.7 0.2 5 26 393 414 390 415 0.92 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF79-202 - 474 5.6e-09 35.6 57.9 10 11 0.00039 0.32 10.8 0.2 6 26 422 442 419 443 0.93 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF79-202 - 474 5.6e-09 35.6 57.9 11 11 0.29 2.3e+02 1.6 1.0 6 23 450 467 448 470 0.81 zinc-finger C2H2-type zinc_ribbon_15 PF17032.5 86 ZNF79-202 - 474 6.2e-09 36.5 51.5 1 7 0.002 1.6 9.5 4.2 32 78 164 209 155 212 0.84 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF79-202 - 474 6.2e-09 36.5 51.5 2 7 0.00017 0.14 12.9 3.4 29 75 216 262 210 268 0.87 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF79-202 - 474 6.2e-09 36.5 51.5 3 7 0.00043 0.35 11.6 3.1 30 75 273 318 266 323 0.84 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF79-202 - 474 6.2e-09 36.5 51.5 4 7 3.8e-05 0.031 15.0 2.6 24 79 323 378 316 383 0.89 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF79-202 - 474 6.2e-09 36.5 51.5 5 7 0.00044 0.36 11.6 2.5 34 77 361 404 354 408 0.86 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF79-202 - 474 6.2e-09 36.5 51.5 6 7 0.37 3e+02 2.2 0.2 32 51 387 406 378 416 0.70 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF79-202 - 474 6.2e-09 36.5 51.5 7 7 0.0003 0.24 12.1 3.0 34 81 417 464 408 467 0.86 zinc-ribbon family XPA_N PF01286.18 32 ZNF79-202 - 474 1.8e-08 34.2 54.7 1 11 0.044 36 4.5 0.4 4 11 171 178 168 184 0.90 XPA protein N-terminal XPA_N PF01286.18 32 ZNF79-202 - 474 1.8e-08 34.2 54.7 2 11 0.0033 2.7 8.1 0.6 3 14 198 209 196 212 0.92 XPA protein N-terminal XPA_N PF01286.18 32 ZNF79-202 - 474 1.8e-08 34.2 54.7 3 11 0.039 32 4.7 0.1 3 12 226 235 224 237 0.88 XPA protein N-terminal XPA_N PF01286.18 32 ZNF79-202 - 474 1.8e-08 34.2 54.7 4 11 0.015 13 6.0 0.7 3 13 254 264 252 271 0.87 XPA protein N-terminal XPA_N PF01286.18 32 ZNF79-202 - 474 1.8e-08 34.2 54.7 5 11 0.014 12 6.1 0.1 3 14 282 293 280 299 0.86 XPA protein N-terminal XPA_N PF01286.18 32 ZNF79-202 - 474 1.8e-08 34.2 54.7 6 11 0.017 14 5.8 0.1 3 11 310 318 308 320 0.89 XPA protein N-terminal XPA_N PF01286.18 32 ZNF79-202 - 474 1.8e-08 34.2 54.7 7 11 0.031 26 5.0 0.0 3 14 338 349 336 355 0.86 XPA protein N-terminal XPA_N PF01286.18 32 ZNF79-202 - 474 1.8e-08 34.2 54.7 8 11 0.0023 1.9 8.6 0.4 3 14 366 377 364 378 0.91 XPA protein N-terminal XPA_N PF01286.18 32 ZNF79-202 - 474 1.8e-08 34.2 54.7 9 11 0.017 14 5.8 0.4 3 14 394 405 392 408 0.90 XPA protein N-terminal XPA_N PF01286.18 32 ZNF79-202 - 474 1.8e-08 34.2 54.7 10 11 0.0026 2.1 8.4 0.3 3 14 422 433 420 438 0.91 XPA protein N-terminal XPA_N PF01286.18 32 ZNF79-202 - 474 1.8e-08 34.2 54.7 11 11 0.037 30 4.8 1.6 3 13 450 460 448 462 0.85 XPA protein N-terminal # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF79-202.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF79-202.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF79-202.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF79-202.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF79-202.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:14:40 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZNF79-203 - 474 3.2e-100 324.5 68.3 1 12 0.00048 0.39 11.2 0.5 13 25 167 179 151 180 0.89 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF79-203 - 474 3.2e-100 324.5 68.3 2 12 9e-13 7.3e-10 38.8 0.4 1 25 183 207 183 208 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF79-203 - 474 3.2e-100 324.5 68.3 3 12 3.3e-11 2.7e-08 33.9 0.1 2 25 212 235 211 236 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF79-203 - 474 3.2e-100 324.5 68.3 4 12 2.7e-12 2.2e-09 37.3 1.0 1 25 239 263 239 264 0.97 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF79-203 - 474 3.2e-100 324.5 68.3 5 12 1.5e-12 1.2e-09 38.1 0.3 1 26 267 292 267 292 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF79-203 - 474 3.2e-100 324.5 68.3 6 12 1.2e-12 9.5e-10 38.5 1.3 1 25 295 319 295 320 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF79-203 - 474 3.2e-100 324.5 68.3 7 12 1.4e-10 1.1e-07 31.9 0.1 4 25 326 347 323 348 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF79-203 - 474 3.2e-100 324.5 68.3 8 12 8.2e-13 6.7e-10 38.9 0.8 1 25 351 375 351 376 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF79-203 - 474 3.2e-100 324.5 68.3 9 12 4.5e-10 3.7e-07 30.3 0.9 2 25 380 403 379 404 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF79-203 - 474 3.2e-100 324.5 68.3 10 12 7.9e-11 6.4e-08 32.7 0.2 1 25 407 431 407 432 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF79-203 - 474 3.2e-100 324.5 68.3 11 12 1.2e-11 9.6e-09 35.3 0.8 1 25 435 459 435 460 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF79-203 - 474 3.2e-100 324.5 68.3 12 12 0.25 2.1e+02 2.6 0.1 1 12 463 474 463 474 0.86 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZNF79-203 - 474 8e-69 224.5 77.3 1 11 2.8e-07 0.00023 21.4 2.3 1 23 169 191 169 191 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF79-203 - 474 8e-69 224.5 77.3 2 11 2.9e-09 2.4e-06 27.7 0.2 1 23 197 219 197 219 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF79-203 - 474 8e-69 224.5 77.3 3 11 4.3e-10 3.5e-07 30.3 0.9 1 23 225 247 225 247 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF79-203 - 474 8e-69 224.5 77.3 4 11 5.6e-08 4.5e-05 23.7 1.1 1 23 253 275 253 275 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF79-203 - 474 8e-69 224.5 77.3 5 11 8.6e-10 7e-07 29.4 1.7 1 23 281 303 281 303 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF79-203 - 474 8e-69 224.5 77.3 6 11 3.4e-07 0.00028 21.2 1.3 1 23 309 331 309 331 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF79-203 - 474 8e-69 224.5 77.3 7 11 8.6e-09 7e-06 26.2 0.3 1 23 337 359 337 359 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF79-203 - 474 8e-69 224.5 77.3 8 11 3.7e-09 3e-06 27.4 0.5 1 23 365 387 365 387 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF79-203 - 474 8e-69 224.5 77.3 9 11 2e-07 0.00017 21.9 1.0 1 23 393 415 393 415 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF79-203 - 474 8e-69 224.5 77.3 10 11 4.3e-09 3.5e-06 27.2 0.4 1 23 421 443 421 443 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF79-203 - 474 8e-69 224.5 77.3 11 11 2.2e-06 0.0018 18.6 2.0 1 23 449 471 449 471 0.98 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZNF79-203 - 474 4.5e-40 132.8 81.1 1 12 2.9 2.3e+03 -0.1 0.1 2 21 147 166 146 168 0.81 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF79-203 - 474 4.5e-40 132.8 81.1 2 12 4.8e-06 0.0039 17.9 2.5 1 23 169 191 169 192 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF79-203 - 474 4.5e-40 132.8 81.1 3 12 4.7e-06 0.0038 17.9 0.4 1 23 197 219 197 220 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF79-203 - 474 4.5e-40 132.8 81.1 4 12 2.5e-06 0.002 18.8 0.6 1 23 225 247 225 248 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF79-203 - 474 4.5e-40 132.8 81.1 5 12 8.5e-06 0.0069 17.1 1.4 1 23 253 275 253 276 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF79-203 - 474 4.5e-40 132.8 81.1 6 12 3.6e-05 0.03 15.2 1.0 1 23 281 303 281 304 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF79-203 - 474 4.5e-40 132.8 81.1 7 12 2e-05 0.016 16.0 1.5 1 23 309 331 309 332 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF79-203 - 474 4.5e-40 132.8 81.1 8 12 3.8e-05 0.031 15.1 0.3 1 23 337 359 337 360 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF79-203 - 474 4.5e-40 132.8 81.1 9 12 3.9e-06 0.0032 18.2 0.5 1 23 365 387 365 388 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF79-203 - 474 4.5e-40 132.8 81.1 10 12 3.6e-05 0.029 15.2 0.9 1 23 393 415 393 416 0.88 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF79-203 - 474 4.5e-40 132.8 81.1 11 12 9.1e-06 0.0074 17.0 0.4 1 23 421 443 421 444 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF79-203 - 474 4.5e-40 132.8 81.1 12 12 8e-06 0.0066 17.2 1.8 1 23 449 471 449 472 0.96 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF79-203 - 474 5.9e-21 74.0 84.2 1 11 0.00015 0.12 12.4 4.8 2 24 169 191 169 194 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF79-203 - 474 5.9e-21 74.0 84.2 2 11 7.9e-05 0.064 13.3 0.7 2 22 197 217 197 221 0.87 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF79-203 - 474 5.9e-21 74.0 84.2 3 11 2e-05 0.016 15.2 1.3 2 24 225 247 225 250 0.95 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF79-203 - 474 5.9e-21 74.0 84.2 4 11 0.0021 1.7 8.7 1.2 2 20 253 271 253 277 0.79 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF79-203 - 474 5.9e-21 74.0 84.2 5 11 0.00064 0.52 10.4 1.4 2 24 281 303 281 306 0.95 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF79-203 - 474 5.9e-21 74.0 84.2 6 11 0.00039 0.32 11.1 2.1 2 20 309 327 309 333 0.80 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF79-203 - 474 5.9e-21 74.0 84.2 7 11 0.0016 1.3 9.1 0.6 2 24 337 359 337 362 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF79-203 - 474 5.9e-21 74.0 84.2 8 11 3.4e-06 0.0027 17.6 0.9 2 24 365 387 365 390 0.95 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF79-203 - 474 5.9e-21 74.0 84.2 9 11 0.0043 3.5 7.7 0.9 2 20 393 411 393 415 0.82 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF79-203 - 474 5.9e-21 74.0 84.2 10 11 0.00059 0.48 10.5 0.7 2 13 421 432 421 443 0.79 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF79-203 - 474 5.9e-21 74.0 84.2 11 11 0.00067 0.54 10.3 0.6 2 12 449 459 449 459 0.94 C2H2-type zinc finger Zn-ribbon_8 PF09723.10 40 ZNF79-203 - 474 3.4e-11 43.1 66.3 1 11 0.00045 0.36 11.0 7.0 6 35 169 205 167 209 0.91 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF79-203 - 474 3.4e-11 43.1 66.3 2 11 6e-05 0.049 13.8 4.6 6 35 197 233 195 237 0.91 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF79-203 - 474 3.4e-11 43.1 66.3 3 11 0.001 0.85 9.8 5.1 6 34 225 260 224 263 0.91 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF79-203 - 474 3.4e-11 43.1 66.3 4 11 0.0011 0.88 9.7 6.8 6 36 253 290 252 293 0.91 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF79-203 - 474 3.4e-11 43.1 66.3 5 11 0.0075 6.1 7.0 0.3 6 17 281 292 280 303 0.83 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF79-203 - 474 3.4e-11 43.1 66.3 6 11 8.7e-05 0.071 13.2 4.6 6 35 309 345 308 349 0.92 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF79-203 - 474 3.4e-11 43.1 66.3 7 11 6.2e-05 0.051 13.7 2.9 6 34 337 372 335 374 0.89 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF79-203 - 474 3.4e-11 43.1 66.3 8 11 7.2e-05 0.059 13.5 4.0 6 34 365 400 364 404 0.91 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF79-203 - 474 3.4e-11 43.1 66.3 9 11 0.011 9.4 6.5 0.6 6 16 393 403 392 411 0.83 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF79-203 - 474 3.4e-11 43.1 66.3 10 11 0.00017 0.14 12.3 5.7 6 36 421 458 420 460 0.86 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF79-203 - 474 3.4e-11 43.1 66.3 11 11 0.028 23 5.2 1.3 6 16 449 459 447 468 0.86 Zinc ribbon domain zf_UBZ PF18439.1 32 ZNF79-203 - 474 3.5e-11 42.5 52.9 1 11 0.042 34 4.1 0.5 3 13 169 179 167 188 0.79 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF79-203 - 474 3.5e-11 42.5 52.9 2 11 0.00046 0.37 10.4 0.3 3 21 197 216 195 216 0.89 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF79-203 - 474 3.5e-11 42.5 52.9 3 11 0.0026 2.1 8.0 0.1 3 20 225 243 223 244 0.84 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF79-203 - 474 3.5e-11 42.5 52.9 4 11 0.038 31 4.3 0.9 3 15 253 265 251 272 0.76 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF79-203 - 474 3.5e-11 42.5 52.9 5 11 0.0053 4.3 7.0 0.1 3 20 281 299 279 300 0.81 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF79-203 - 474 3.5e-11 42.5 52.9 6 11 0.0079 6.5 6.5 0.6 3 13 309 319 307 328 0.84 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF79-203 - 474 3.5e-11 42.5 52.9 7 11 0.0085 6.9 6.4 0.0 3 21 337 356 335 356 0.85 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF79-203 - 474 3.5e-11 42.5 52.9 8 11 0.0018 1.4 8.5 0.1 3 15 365 377 363 384 0.84 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF79-203 - 474 3.5e-11 42.5 52.9 9 11 0.0028 2.3 7.9 0.2 3 16 393 407 391 412 0.82 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF79-203 - 474 3.5e-11 42.5 52.9 10 11 0.0046 3.7 7.2 0.3 3 21 421 440 419 440 0.89 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF79-203 - 474 3.5e-11 42.5 52.9 11 11 0.011 8.7 6.0 0.6 3 15 449 461 447 468 0.79 Ubiquitin-Binding Zinc Finger zf-C2H2_jaz PF12171.8 27 ZNF79-203 - 474 1.9e-10 40.7 60.0 1 11 0.71 5.8e+02 1.0 3.0 2 24 169 191 168 191 0.90 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF79-203 - 474 1.9e-10 40.7 60.0 2 11 0.0027 2.2 8.7 0.1 2 22 197 217 196 217 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF79-203 - 474 1.9e-10 40.7 60.0 3 11 0.0067 5.5 7.4 0.3 2 24 225 247 224 247 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF79-203 - 474 1.9e-10 40.7 60.0 4 11 0.0014 1.1 9.6 0.5 2 22 253 273 252 273 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF79-203 - 474 1.9e-10 40.7 60.0 5 11 0.00074 0.6 10.5 0.3 2 24 281 303 280 303 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF79-203 - 474 1.9e-10 40.7 60.0 6 11 0.67 5.5e+02 1.0 1.5 2 12 309 319 308 329 0.75 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF79-203 - 474 1.9e-10 40.7 60.0 7 11 0.00042 0.34 11.2 0.1 2 24 337 359 336 359 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF79-203 - 474 1.9e-10 40.7 60.0 8 11 0.019 15 6.0 0.6 2 24 365 387 364 387 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF79-203 - 474 1.9e-10 40.7 60.0 9 11 0.0056 4.6 7.6 0.1 2 20 393 411 392 411 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF79-203 - 474 1.9e-10 40.7 60.0 10 11 0.0034 2.8 8.3 0.2 2 22 421 441 420 441 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF79-203 - 474 1.9e-10 40.7 60.0 11 11 0.015 12 6.3 0.2 2 22 449 469 448 469 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_11 PF16622.5 29 ZNF79-203 - 474 5.6e-09 35.6 57.9 1 11 0.011 8.7 6.2 2.3 7 23 171 187 169 189 0.94 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF79-203 - 474 5.6e-09 35.6 57.9 2 11 0.00067 0.55 10.0 0.5 6 26 198 218 195 219 0.93 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF79-203 - 474 5.6e-09 35.6 57.9 3 11 0.00019 0.16 11.8 0.1 5 24 225 244 222 246 0.91 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF79-203 - 474 5.6e-09 35.6 57.9 4 11 0.099 81 3.1 0.4 5 26 253 274 250 275 0.89 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF79-203 - 474 5.6e-09 35.6 57.9 5 11 0.8 6.5e+02 0.2 0.1 6 17 282 293 280 301 0.72 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF79-203 - 474 5.6e-09 35.6 57.9 6 11 0.049 40 4.1 0.8 5 16 309 320 306 331 0.77 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF79-203 - 474 5.6e-09 35.6 57.9 7 11 0.015 12 5.8 0.1 5 23 337 355 334 358 0.87 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF79-203 - 474 5.6e-09 35.6 57.9 8 11 0.023 19 5.1 0.1 5 17 365 377 362 384 0.82 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF79-203 - 474 5.6e-09 35.6 57.9 9 11 0.0002 0.16 11.7 0.2 5 26 393 414 390 415 0.92 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF79-203 - 474 5.6e-09 35.6 57.9 10 11 0.00039 0.32 10.8 0.2 6 26 422 442 419 443 0.93 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF79-203 - 474 5.6e-09 35.6 57.9 11 11 0.29 2.3e+02 1.6 1.0 6 23 450 467 448 470 0.81 zinc-finger C2H2-type zinc_ribbon_15 PF17032.5 86 ZNF79-203 - 474 6.2e-09 36.5 51.5 1 7 0.002 1.6 9.5 4.2 32 78 164 209 155 212 0.84 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF79-203 - 474 6.2e-09 36.5 51.5 2 7 0.00017 0.14 12.9 3.4 29 75 216 262 210 268 0.87 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF79-203 - 474 6.2e-09 36.5 51.5 3 7 0.00043 0.35 11.6 3.1 30 75 273 318 266 323 0.84 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF79-203 - 474 6.2e-09 36.5 51.5 4 7 3.8e-05 0.031 15.0 2.6 24 79 323 378 316 383 0.89 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF79-203 - 474 6.2e-09 36.5 51.5 5 7 0.00044 0.36 11.6 2.5 34 77 361 404 354 408 0.86 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF79-203 - 474 6.2e-09 36.5 51.5 6 7 0.37 3e+02 2.2 0.2 32 51 387 406 378 416 0.70 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF79-203 - 474 6.2e-09 36.5 51.5 7 7 0.0003 0.24 12.1 3.0 34 81 417 464 408 467 0.86 zinc-ribbon family XPA_N PF01286.18 32 ZNF79-203 - 474 1.8e-08 34.2 54.7 1 11 0.044 36 4.5 0.4 4 11 171 178 168 184 0.90 XPA protein N-terminal XPA_N PF01286.18 32 ZNF79-203 - 474 1.8e-08 34.2 54.7 2 11 0.0033 2.7 8.1 0.6 3 14 198 209 196 212 0.92 XPA protein N-terminal XPA_N PF01286.18 32 ZNF79-203 - 474 1.8e-08 34.2 54.7 3 11 0.039 32 4.7 0.1 3 12 226 235 224 237 0.88 XPA protein N-terminal XPA_N PF01286.18 32 ZNF79-203 - 474 1.8e-08 34.2 54.7 4 11 0.015 13 6.0 0.7 3 13 254 264 252 271 0.87 XPA protein N-terminal XPA_N PF01286.18 32 ZNF79-203 - 474 1.8e-08 34.2 54.7 5 11 0.014 12 6.1 0.1 3 14 282 293 280 299 0.86 XPA protein N-terminal XPA_N PF01286.18 32 ZNF79-203 - 474 1.8e-08 34.2 54.7 6 11 0.017 14 5.8 0.1 3 11 310 318 308 320 0.89 XPA protein N-terminal XPA_N PF01286.18 32 ZNF79-203 - 474 1.8e-08 34.2 54.7 7 11 0.031 26 5.0 0.0 3 14 338 349 336 355 0.86 XPA protein N-terminal XPA_N PF01286.18 32 ZNF79-203 - 474 1.8e-08 34.2 54.7 8 11 0.0023 1.9 8.6 0.4 3 14 366 377 364 378 0.91 XPA protein N-terminal XPA_N PF01286.18 32 ZNF79-203 - 474 1.8e-08 34.2 54.7 9 11 0.017 14 5.8 0.4 3 14 394 405 392 408 0.90 XPA protein N-terminal XPA_N PF01286.18 32 ZNF79-203 - 474 1.8e-08 34.2 54.7 10 11 0.0026 2.1 8.4 0.3 3 14 422 433 420 438 0.91 XPA protein N-terminal XPA_N PF01286.18 32 ZNF79-203 - 474 1.8e-08 34.2 54.7 11 11 0.037 30 4.8 1.6 3 13 450 460 448 462 0.85 XPA protein N-terminal # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF79-203.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF79-203.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF79-203.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF79-203.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF79-203.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:14:41 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZNF79-204 - 364 7.1e-102 329.7 68.3 1 12 0.00044 0.28 11.7 0.5 13 25 57 69 41 70 0.89 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF79-204 - 364 7.1e-102 329.7 68.3 2 12 8.2e-13 5.3e-10 39.3 0.4 1 25 73 97 73 98 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF79-204 - 364 7.1e-102 329.7 68.3 3 12 3e-11 1.9e-08 34.3 0.1 2 25 102 125 101 126 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF79-204 - 364 7.1e-102 329.7 68.3 4 12 2.4e-12 1.6e-09 37.8 1.0 1 25 129 153 129 154 0.97 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF79-204 - 364 7.1e-102 329.7 68.3 5 12 1.4e-12 8.9e-10 38.6 0.3 1 26 157 182 157 182 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF79-204 - 364 7.1e-102 329.7 68.3 6 12 1.1e-12 6.9e-10 38.9 1.3 1 25 185 209 185 210 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF79-204 - 364 7.1e-102 329.7 68.3 7 12 1.3e-10 8.1e-08 32.4 0.1 4 25 216 237 213 238 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF79-204 - 364 7.1e-102 329.7 68.3 8 12 7.5e-13 4.8e-10 39.4 0.8 1 25 241 265 241 266 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF79-204 - 364 7.1e-102 329.7 68.3 9 12 4.1e-10 2.6e-07 30.7 0.9 2 25 270 293 269 294 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF79-204 - 364 7.1e-102 329.7 68.3 10 12 7.2e-11 4.6e-08 33.1 0.2 1 25 297 321 297 322 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF79-204 - 364 7.1e-102 329.7 68.3 11 12 1.1e-11 6.9e-09 35.7 0.8 1 25 325 349 325 350 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF79-204 - 364 7.1e-102 329.7 68.3 12 12 0.24 1.5e+02 3.0 0.1 1 12 353 364 353 364 0.86 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZNF79-204 - 364 2.4e-70 229.3 77.3 1 11 2.6e-07 0.00017 21.9 2.3 1 23 59 81 59 81 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF79-204 - 364 2.4e-70 229.3 77.3 2 11 2.7e-09 1.7e-06 28.1 0.2 1 23 87 109 87 109 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF79-204 - 364 2.4e-70 229.3 77.3 3 11 4e-10 2.6e-07 30.7 0.9 1 23 115 137 115 137 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF79-204 - 364 2.4e-70 229.3 77.3 4 11 5.1e-08 3.3e-05 24.1 1.1 1 23 143 165 143 165 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF79-204 - 364 2.4e-70 229.3 77.3 5 11 7.9e-10 5.1e-07 29.8 1.7 1 23 171 193 171 193 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF79-204 - 364 2.4e-70 229.3 77.3 6 11 3.2e-07 0.0002 21.6 1.3 1 23 199 221 199 221 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF79-204 - 364 2.4e-70 229.3 77.3 7 11 7.9e-09 5e-06 26.7 0.3 1 23 227 249 227 249 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF79-204 - 364 2.4e-70 229.3 77.3 8 11 3.4e-09 2.2e-06 27.8 0.5 1 23 255 277 255 277 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF79-204 - 364 2.4e-70 229.3 77.3 9 11 1.9e-07 0.00012 22.3 1.0 1 23 283 305 283 305 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF79-204 - 364 2.4e-70 229.3 77.3 10 11 4e-09 2.5e-06 27.6 0.4 1 23 311 333 311 333 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF79-204 - 364 2.4e-70 229.3 77.3 11 11 2.1e-06 0.0013 19.0 2.0 1 23 339 361 339 361 0.98 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZNF79-204 - 364 1.1e-41 137.8 81.1 1 12 2.7 1.7e+03 0.4 0.1 2 21 37 56 36 58 0.81 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF79-204 - 364 1.1e-41 137.8 81.1 2 12 4.4e-06 0.0028 18.3 2.5 1 23 59 81 59 82 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF79-204 - 364 1.1e-41 137.8 81.1 3 12 4.3e-06 0.0027 18.4 0.4 1 23 87 109 87 110 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF79-204 - 364 1.1e-41 137.8 81.1 4 12 2.2e-06 0.0014 19.3 0.6 1 23 115 137 115 138 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF79-204 - 364 1.1e-41 137.8 81.1 5 12 7.8e-06 0.005 17.6 1.4 1 23 143 165 143 166 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF79-204 - 364 1.1e-41 137.8 81.1 6 12 3.3e-05 0.021 15.6 1.0 1 23 171 193 171 194 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF79-204 - 364 1.1e-41 137.8 81.1 7 12 1.8e-05 0.012 16.4 1.5 1 23 199 221 199 222 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF79-204 - 364 1.1e-41 137.8 81.1 8 12 3.5e-05 0.022 15.5 0.3 1 23 227 249 227 250 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF79-204 - 364 1.1e-41 137.8 81.1 9 12 3.6e-06 0.0023 18.6 0.5 1 23 255 277 255 278 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF79-204 - 364 1.1e-41 137.8 81.1 10 12 3.3e-05 0.021 15.6 0.9 1 23 283 305 283 306 0.88 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF79-204 - 364 1.1e-41 137.8 81.1 11 12 8.3e-06 0.0053 17.5 0.4 1 23 311 333 311 334 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF79-204 - 364 1.1e-41 137.8 81.1 12 12 7.4e-06 0.0047 17.6 1.8 1 23 339 361 339 362 0.96 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF79-204 - 364 2e-22 78.7 84.2 1 11 0.00014 0.089 12.8 4.8 2 24 59 81 59 84 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF79-204 - 364 2e-22 78.7 84.2 2 11 7.3e-05 0.047 13.7 0.7 2 22 87 107 87 111 0.87 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF79-204 - 364 2e-22 78.7 84.2 3 11 1.8e-05 0.012 15.6 1.3 2 24 115 137 115 140 0.95 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF79-204 - 364 2e-22 78.7 84.2 4 11 0.002 1.3 9.1 1.2 2 20 143 161 143 167 0.79 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF79-204 - 364 2e-22 78.7 84.2 5 11 0.00059 0.38 10.8 1.4 2 24 171 193 171 196 0.95 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF79-204 - 364 2e-22 78.7 84.2 6 11 0.00036 0.23 11.5 2.1 2 20 199 217 199 223 0.80 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF79-204 - 364 2e-22 78.7 84.2 7 11 0.0014 0.92 9.6 0.6 2 24 227 249 227 252 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF79-204 - 364 2e-22 78.7 84.2 8 11 3.1e-06 0.002 18.1 0.9 2 24 255 277 255 280 0.95 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF79-204 - 364 2e-22 78.7 84.2 9 11 0.004 2.6 8.2 0.9 2 20 283 301 283 305 0.82 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF79-204 - 364 2e-22 78.7 84.2 10 11 0.00055 0.35 10.9 0.7 2 13 311 322 311 333 0.79 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF79-204 - 364 2e-22 78.7 84.2 11 11 0.00063 0.4 10.7 0.6 2 12 339 349 339 349 0.94 C2H2-type zinc finger zf_UBZ PF18439.1 32 ZNF79-204 - 364 1.3e-12 47.1 52.9 1 11 0.04 25 4.6 0.5 3 13 59 69 57 78 0.79 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF79-204 - 364 1.3e-12 47.1 52.9 2 11 0.00042 0.27 10.9 0.3 3 21 87 106 85 106 0.89 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF79-204 - 364 1.3e-12 47.1 52.9 3 11 0.0024 1.5 8.4 0.1 3 20 115 133 113 134 0.84 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF79-204 - 364 1.3e-12 47.1 52.9 4 11 0.036 23 4.7 0.9 3 15 143 155 141 162 0.76 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF79-204 - 364 1.3e-12 47.1 52.9 5 11 0.0049 3.2 7.4 0.1 3 20 171 189 169 190 0.81 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF79-204 - 364 1.3e-12 47.1 52.9 6 11 0.0074 4.8 6.9 0.6 3 13 199 209 197 218 0.84 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF79-204 - 364 1.3e-12 47.1 52.9 7 11 0.0079 5.1 6.8 0.0 3 21 227 246 225 246 0.85 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF79-204 - 364 1.3e-12 47.1 52.9 8 11 0.0017 1.1 9.0 0.1 3 15 255 267 253 274 0.84 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF79-204 - 364 1.3e-12 47.1 52.9 9 11 0.0026 1.7 8.3 0.2 3 16 283 297 281 302 0.82 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF79-204 - 364 1.3e-12 47.1 52.9 10 11 0.0042 2.7 7.7 0.3 3 21 311 330 309 330 0.89 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF79-204 - 364 1.3e-12 47.1 52.9 11 11 0.01 6.4 6.5 0.6 3 15 339 351 337 358 0.79 Ubiquitin-Binding Zinc Finger zf-C2H2_jaz PF12171.8 27 ZNF79-204 - 364 6.2e-12 45.5 60.0 1 11 0.65 4.2e+02 1.4 3.0 2 24 59 81 58 81 0.90 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF79-204 - 364 6.2e-12 45.5 60.0 2 11 0.0025 1.6 9.1 0.1 2 22 87 107 86 107 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF79-204 - 364 6.2e-12 45.5 60.0 3 11 0.0062 4 7.9 0.3 2 24 115 137 114 137 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF79-204 - 364 6.2e-12 45.5 60.0 4 11 0.0013 0.83 10.0 0.5 2 22 143 163 142 163 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF79-204 - 364 6.2e-12 45.5 60.0 5 11 0.00068 0.44 10.9 0.3 2 24 171 193 170 193 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF79-204 - 364 6.2e-12 45.5 60.0 6 11 0.63 4e+02 1.5 1.5 2 12 199 209 198 219 0.75 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF79-204 - 364 6.2e-12 45.5 60.0 7 11 0.00039 0.25 11.7 0.1 2 24 227 249 226 249 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF79-204 - 364 6.2e-12 45.5 60.0 8 11 0.017 11 6.4 0.6 2 24 255 277 254 277 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF79-204 - 364 6.2e-12 45.5 60.0 9 11 0.0052 3.4 8.1 0.1 2 20 283 301 282 301 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF79-204 - 364 6.2e-12 45.5 60.0 10 11 0.0032 2 8.8 0.2 2 22 311 331 310 331 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF79-204 - 364 6.2e-12 45.5 60.0 11 11 0.014 9 6.7 0.2 2 22 339 359 338 359 0.92 Zinc-finger double-stranded RNA-binding Zn-ribbon_8 PF09723.10 40 ZNF79-204 - 364 1.1e-11 44.6 68.3 1 11 0.00054 0.34 11.0 7.3 6 35 59 95 57 98 0.91 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF79-204 - 364 1.1e-11 44.6 68.3 2 11 5.9e-05 0.038 14.1 4.7 6 35 87 123 85 128 0.91 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF79-204 - 364 1.1e-11 44.6 68.3 3 11 0.0017 1.1 9.5 5.5 6 33 115 149 114 151 0.92 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF79-204 - 364 1.1e-11 44.6 68.3 4 11 0.0012 0.77 9.9 7.0 6 36 143 180 142 182 0.91 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF79-204 - 364 1.1e-11 44.6 68.3 5 11 0.0069 4.4 7.5 0.3 6 17 171 182 170 194 0.83 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF79-204 - 364 1.1e-11 44.6 68.3 6 11 0.00011 0.073 13.2 5.1 6 35 199 235 198 238 0.92 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF79-204 - 364 1.1e-11 44.6 68.3 7 11 4.4e-05 0.028 14.5 3.1 6 35 227 263 226 266 0.88 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF79-204 - 364 1.1e-11 44.6 68.3 8 11 9.5e-05 0.061 13.5 4.6 6 34 255 290 253 294 0.91 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF79-204 - 364 1.1e-11 44.6 68.3 9 11 0.012 7.5 6.8 0.7 6 16 283 293 282 301 0.83 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF79-204 - 364 1.1e-11 44.6 68.3 10 11 0.0002 0.13 12.4 6.1 6 36 311 348 310 350 0.86 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF79-204 - 364 1.1e-11 44.6 68.3 11 11 0.028 18 5.6 1.5 6 16 339 349 338 359 0.85 Zinc ribbon domain zf-C2H2_11 PF16622.5 29 ZNF79-204 - 364 2.1e-10 40.1 57.9 1 11 0.01 6.4 6.6 2.3 7 23 61 77 59 79 0.94 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF79-204 - 364 2.1e-10 40.1 57.9 2 11 0.00062 0.4 10.5 0.5 6 26 88 108 85 109 0.93 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF79-204 - 364 2.1e-10 40.1 57.9 3 11 0.00018 0.11 12.2 0.1 5 24 115 134 112 136 0.91 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF79-204 - 364 2.1e-10 40.1 57.9 4 11 0.092 59 3.6 0.4 5 26 143 164 140 165 0.89 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF79-204 - 364 2.1e-10 40.1 57.9 5 11 0.75 4.8e+02 0.6 0.1 6 17 172 183 170 191 0.72 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF79-204 - 364 2.1e-10 40.1 57.9 6 11 0.046 30 4.5 0.8 5 16 199 210 196 221 0.77 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF79-204 - 364 2.1e-10 40.1 57.9 7 11 0.014 8.7 6.2 0.1 5 23 227 245 224 248 0.87 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF79-204 - 364 2.1e-10 40.1 57.9 8 11 0.022 14 5.6 0.1 5 17 255 267 252 274 0.82 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF79-204 - 364 2.1e-10 40.1 57.9 9 11 0.00018 0.12 12.2 0.2 5 26 283 304 280 305 0.92 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF79-204 - 364 2.1e-10 40.1 57.9 10 11 0.00036 0.23 11.2 0.2 6 26 312 332 309 333 0.93 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF79-204 - 364 2.1e-10 40.1 57.9 11 11 0.27 1.7e+02 2.1 1.0 6 23 340 357 338 360 0.81 zinc-finger C2H2-type XPA_N PF01286.18 32 ZNF79-204 - 364 7.3e-10 38.7 54.7 1 11 0.041 26 4.9 0.4 4 11 61 68 58 74 0.90 XPA protein N-terminal XPA_N PF01286.18 32 ZNF79-204 - 364 7.3e-10 38.7 54.7 2 11 0.0031 2 8.5 0.6 3 14 88 99 86 102 0.92 XPA protein N-terminal XPA_N PF01286.18 32 ZNF79-204 - 364 7.3e-10 38.7 54.7 3 11 0.037 23 5.1 0.1 3 12 116 125 114 127 0.88 XPA protein N-terminal XPA_N PF01286.18 32 ZNF79-204 - 364 7.3e-10 38.7 54.7 4 11 0.014 9.2 6.4 0.7 3 13 144 154 142 161 0.87 XPA protein N-terminal XPA_N PF01286.18 32 ZNF79-204 - 364 7.3e-10 38.7 54.7 5 11 0.013 8.6 6.5 0.1 3 14 172 183 170 189 0.86 XPA protein N-terminal XPA_N PF01286.18 32 ZNF79-204 - 364 7.3e-10 38.7 54.7 6 11 0.016 10 6.2 0.1 3 11 200 208 198 210 0.89 XPA protein N-terminal XPA_N PF01286.18 32 ZNF79-204 - 364 7.3e-10 38.7 54.7 7 11 0.029 19 5.4 0.0 3 14 228 239 226 245 0.86 XPA protein N-terminal XPA_N PF01286.18 32 ZNF79-204 - 364 7.3e-10 38.7 54.7 8 11 0.0022 1.4 9.0 0.4 3 14 256 267 254 268 0.91 XPA protein N-terminal XPA_N PF01286.18 32 ZNF79-204 - 364 7.3e-10 38.7 54.7 9 11 0.016 10 6.2 0.4 3 14 284 295 282 298 0.90 XPA protein N-terminal XPA_N PF01286.18 32 ZNF79-204 - 364 7.3e-10 38.7 54.7 10 11 0.0025 1.6 8.9 0.3 3 14 312 323 310 328 0.91 XPA protein N-terminal XPA_N PF01286.18 32 ZNF79-204 - 364 7.3e-10 38.7 54.7 11 11 0.035 22 5.2 1.6 3 13 340 350 338 352 0.85 XPA protein N-terminal zinc_ribbon_15 PF17032.5 86 ZNF79-204 - 364 1.2e-09 38.8 52.2 1 7 0.0016 1 10.2 4.2 31 78 53 99 39 102 0.85 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF79-204 - 364 1.2e-09 38.8 52.2 2 7 0.00017 0.11 13.3 3.6 28 75 105 152 99 158 0.87 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF79-204 - 364 1.2e-09 38.8 52.2 3 7 0.0004 0.26 12.1 3.2 30 75 163 208 157 213 0.84 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF79-204 - 364 1.2e-09 38.8 52.2 4 7 3.2e-05 0.02 15.6 2.2 25 79 214 268 208 272 0.91 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF79-204 - 364 1.2e-09 38.8 52.2 5 7 0.00034 0.22 12.3 2.2 34 78 251 295 246 298 0.86 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF79-204 - 364 1.2e-09 38.8 52.2 6 7 0.0014 0.87 10.4 2.3 31 78 276 323 270 325 0.84 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF79-204 - 364 1.2e-09 38.8 52.2 7 7 0.00029 0.18 12.5 3.1 34 81 307 354 298 357 0.86 zinc-ribbon family # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF79-204.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF79-204.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF79-204.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF79-204.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF79-204.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:14:41 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZNF792-201 - 632 1.1e-82 269.1 86.1 1 14 0.0045 5 7.7 0.6 1 18 146 163 146 167 0.90 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF792-201 - 632 1.1e-82 269.1 86.1 2 14 9 1e+04 -2.7 0.1 7 24 202 219 201 220 0.69 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF792-201 - 632 1.1e-82 269.1 86.1 3 14 7e-08 7.9e-05 22.9 0.5 2 25 269 292 268 293 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF792-201 - 632 1.1e-82 269.1 86.1 4 14 2.1e-06 0.0023 18.3 2.0 1 25 296 320 296 321 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF792-201 - 632 1.1e-82 269.1 86.1 5 14 1.1e-09 1.2e-06 28.6 0.7 1 25 324 348 324 349 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF792-201 - 632 1.1e-82 269.1 86.1 6 14 7.5e-12 8.4e-09 35.5 0.4 1 25 352 376 352 377 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF792-201 - 632 1.1e-82 269.1 86.1 7 14 1.3e-07 0.00015 22.1 3.6 1 25 380 404 380 405 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF792-201 - 632 1.1e-82 269.1 86.1 8 14 1.9e-09 2.2e-06 27.9 1.6 2 26 409 433 408 433 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF792-201 - 632 1.1e-82 269.1 86.1 9 14 1.3e-07 0.00014 22.1 0.1 2 25 437 460 436 461 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF792-201 - 632 1.1e-82 269.1 86.1 10 14 2.1e-11 2.3e-08 34.1 0.2 1 25 464 488 464 489 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF792-201 - 632 1.1e-82 269.1 86.1 11 14 1.1e-11 1.3e-08 34.9 0.5 1 25 492 516 492 517 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF792-201 - 632 1.1e-82 269.1 86.1 12 14 7.8e-12 8.7e-09 35.4 0.6 1 25 520 544 520 545 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF792-201 - 632 1.1e-82 269.1 86.1 13 14 2.7e-11 3e-08 33.7 0.5 1 25 548 572 548 573 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF792-201 - 632 1.1e-82 269.1 86.1 14 14 0.79 8.9e+02 0.6 0.1 2 13 577 588 577 599 0.73 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZNF792-201 - 632 7.4e-64 208.8 99.9 1 13 0.0035 3.9 8.1 1.0 2 23 133 154 131 154 0.93 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF792-201 - 632 7.4e-64 208.8 99.9 2 13 0.004 4.5 7.9 0.2 10 23 263 276 262 276 0.95 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF792-201 - 632 7.4e-64 208.8 99.9 3 13 1.1e-06 0.0013 19.1 0.3 1 23 282 304 282 304 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF792-201 - 632 7.4e-64 208.8 99.9 4 13 5.5e-07 0.00062 20.1 5.3 1 23 310 332 310 332 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF792-201 - 632 7.4e-64 208.8 99.9 5 13 5.3e-09 5.9e-06 26.5 1.5 1 23 338 360 338 360 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF792-201 - 632 7.4e-64 208.8 99.9 6 13 1.1e-08 1.3e-05 25.4 2.7 1 23 366 388 366 388 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF792-201 - 632 7.4e-64 208.8 99.9 7 13 5e-06 0.0056 17.1 3.1 1 23 394 416 394 416 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF792-201 - 632 7.4e-64 208.8 99.9 8 13 6.8e-07 0.00077 19.8 0.7 1 23 422 444 422 444 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF792-201 - 632 7.4e-64 208.8 99.9 9 13 4.1e-09 4.6e-06 26.8 0.5 3 23 452 472 452 472 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF792-201 - 632 7.4e-64 208.8 99.9 10 13 2.9e-08 3.2e-05 24.1 0.9 1 23 478 500 478 500 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF792-201 - 632 7.4e-64 208.8 99.9 11 13 1.6e-08 1.8e-05 24.9 1.8 1 23 506 528 506 528 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF792-201 - 632 7.4e-64 208.8 99.9 12 13 1.9e-09 2.1e-06 27.9 1.2 1 23 534 556 534 556 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF792-201 - 632 7.4e-64 208.8 99.9 13 13 7.2e-08 8.1e-05 22.9 0.2 1 23 562 584 562 584 0.98 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZNF792-201 - 632 9.2e-33 110.1 97.6 1 13 0.0066 7.4 7.7 0.5 2 23 133 154 132 155 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF792-201 - 632 9.2e-33 110.1 97.6 2 13 0.08 90 4.3 0.2 6 23 257 276 254 277 0.83 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF792-201 - 632 9.2e-33 110.1 97.6 3 13 0.00096 1.1 10.3 0.3 1 23 282 304 282 305 0.90 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF792-201 - 632 9.2e-33 110.1 97.6 4 13 0.00043 0.48 11.4 5.2 1 23 310 332 310 333 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF792-201 - 632 9.2e-33 110.1 97.6 5 13 0.00025 0.28 12.1 1.3 1 23 338 360 338 361 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF792-201 - 632 9.2e-33 110.1 97.6 6 13 5.6e-05 0.063 14.2 2.1 1 23 366 388 366 389 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF792-201 - 632 9.2e-33 110.1 97.6 7 13 2.6e-06 0.0029 18.3 3.4 1 23 394 416 394 417 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF792-201 - 632 9.2e-33 110.1 97.6 8 13 0.0007 0.78 10.7 0.7 1 23 422 444 422 445 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF792-201 - 632 9.2e-33 110.1 97.6 9 13 6.1e-05 0.069 14.0 0.8 3 23 452 472 450 473 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF792-201 - 632 9.2e-33 110.1 97.6 10 13 2.3e-05 0.026 15.4 0.9 1 23 478 500 478 501 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF792-201 - 632 9.2e-33 110.1 97.6 11 13 1.8e-05 0.02 15.7 1.3 1 23 506 528 506 529 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF792-201 - 632 9.2e-33 110.1 97.6 12 13 4.7e-07 0.00053 20.6 1.3 1 23 534 556 534 557 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF792-201 - 632 9.2e-33 110.1 97.6 13 13 1.4e-05 0.016 16.0 0.1 1 23 562 584 562 585 0.95 C2H2-type zinc finger KRAB PF01352.27 42 ZNF792-201 - 632 1.2e-22 79.3 0.4 1 1 1.9e-25 2.2e-22 78.4 0.4 1 42 13 54 13 54 0.98 KRAB box zf-C2H2_6 PF13912.6 27 ZNF792-201 - 632 3.5e-15 55.6 91.9 1 12 0.14 1.6e+02 2.5 0.1 4 26 134 156 133 157 0.78 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF792-201 - 632 3.5e-15 55.6 91.9 2 12 0.069 77 3.5 0.6 2 24 282 304 282 306 0.85 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF792-201 - 632 3.5e-15 55.6 91.9 3 12 0.083 93 3.2 5.1 2 24 310 332 310 335 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF792-201 - 632 3.5e-15 55.6 91.9 4 12 0.015 17 5.5 1.0 2 24 338 360 338 363 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF792-201 - 632 3.5e-15 55.6 91.9 5 12 0.0063 7 6.8 2.0 2 24 366 388 366 390 0.95 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF792-201 - 632 3.5e-15 55.6 91.9 6 12 2.2e-05 0.025 14.6 2.2 1 20 393 412 393 417 0.84 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF792-201 - 632 3.5e-15 55.6 91.9 7 12 0.00056 0.63 10.1 0.9 2 21 422 441 422 446 0.90 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF792-201 - 632 3.5e-15 55.6 91.9 8 12 0.00098 1.1 9.3 1.2 2 24 450 472 450 475 0.91 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF792-201 - 632 3.5e-15 55.6 91.9 9 12 6.4e-06 0.0072 16.3 1.3 2 24 478 500 478 503 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF792-201 - 632 3.5e-15 55.6 91.9 10 12 0.00046 0.51 10.4 1.7 2 24 506 528 506 531 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF792-201 - 632 3.5e-15 55.6 91.9 11 12 1.1e-06 0.0012 18.8 1.2 2 25 534 557 534 558 0.95 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF792-201 - 632 3.5e-15 55.6 91.9 12 12 0.0005 0.57 10.3 0.5 2 12 562 572 562 574 0.94 C2H2-type zinc finger zf_UBZ PF18439.1 32 ZNF792-201 - 632 4.6e-08 32.5 57.6 1 13 0.12 1.4e+02 2.2 0.6 2 21 131 151 130 151 0.87 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF792-201 - 632 4.6e-08 32.5 57.6 2 13 0.77 8.6e+02 -0.3 0.0 22 28 246 252 246 252 0.89 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF792-201 - 632 4.6e-08 32.5 57.6 3 13 0.013 15 5.3 0.0 3 21 282 301 280 301 0.87 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF792-201 - 632 4.6e-08 32.5 57.6 4 13 0.047 53 3.5 1.2 3 16 310 324 308 329 0.82 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF792-201 - 632 4.6e-08 32.5 57.6 5 13 0.019 21 4.8 0.1 3 20 338 356 336 357 0.81 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF792-201 - 632 4.6e-08 32.5 57.6 6 13 0.0065 7.2 6.3 0.2 3 14 366 377 364 384 0.84 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF792-201 - 632 4.6e-08 32.5 57.6 7 13 0.013 15 5.3 0.8 3 15 394 406 392 412 0.80 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF792-201 - 632 4.6e-08 32.5 57.6 8 13 0.0075 8.4 6.1 0.2 3 20 422 440 420 441 0.82 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF792-201 - 632 4.6e-08 32.5 57.6 9 13 0.024 27 4.5 0.2 5 21 452 469 450 469 0.91 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF792-201 - 632 4.6e-08 32.5 57.6 10 13 0.0016 1.8 8.2 0.1 3 20 478 496 476 497 0.92 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF792-201 - 632 4.6e-08 32.5 57.6 11 13 0.0017 1.8 8.2 0.1 3 20 506 524 504 525 0.81 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF792-201 - 632 4.6e-08 32.5 57.6 12 13 0.0036 4 7.1 0.1 3 18 534 550 532 553 0.76 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF792-201 - 632 4.6e-08 32.5 57.6 13 13 0.01 11 5.7 0.1 3 13 562 572 560 581 0.83 Ubiquitin-Binding Zinc Finger # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF792-201.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF792-201.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF792-201.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF792-201.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF792-201.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:14:42 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZNF792-202 - 565 2e-83 271.4 86.1 1 14 0.0039 4.4 7.9 0.6 1 18 79 96 79 100 0.90 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF792-202 - 565 2e-83 271.4 86.1 2 14 7.9 8.8e+03 -2.5 0.1 7 24 135 152 134 153 0.69 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF792-202 - 565 2e-83 271.4 86.1 3 14 6.2e-08 6.9e-05 23.1 0.5 2 25 202 225 201 226 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF792-202 - 565 2e-83 271.4 86.1 4 14 1.8e-06 0.002 18.4 2.0 1 25 229 253 229 254 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF792-202 - 565 2e-83 271.4 86.1 5 14 9.6e-10 1.1e-06 28.8 0.7 1 25 257 281 257 282 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF792-202 - 565 2e-83 271.4 86.1 6 14 6.5e-12 7.3e-09 35.7 0.4 1 25 285 309 285 310 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF792-202 - 565 2e-83 271.4 86.1 7 14 1.1e-07 0.00013 22.3 3.6 1 25 313 337 313 338 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF792-202 - 565 2e-83 271.4 86.1 8 14 1.7e-09 1.9e-06 28.0 1.6 2 26 342 366 341 366 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF792-202 - 565 2e-83 271.4 86.1 9 14 1.1e-07 0.00012 22.3 0.1 2 25 370 393 369 394 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF792-202 - 565 2e-83 271.4 86.1 10 14 1.8e-11 2e-08 34.3 0.2 1 25 397 421 397 422 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF792-202 - 565 2e-83 271.4 86.1 11 14 1e-11 1.1e-08 35.1 0.5 1 25 425 449 425 450 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF792-202 - 565 2e-83 271.4 86.1 12 14 6.8e-12 7.6e-09 35.6 0.6 1 25 453 477 453 478 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF792-202 - 565 2e-83 271.4 86.1 13 14 2.3e-11 2.6e-08 33.9 0.5 1 25 481 505 481 506 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF792-202 - 565 2e-83 271.4 86.1 14 14 0.7 7.8e+02 0.8 0.1 2 13 510 521 510 532 0.73 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZNF792-202 - 565 1.5e-64 211.0 99.9 1 13 0.003 3.4 8.3 1.0 2 23 66 87 64 87 0.93 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF792-202 - 565 1.5e-64 211.0 99.9 2 13 0.0036 4 8.1 0.2 10 23 196 209 195 209 0.95 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF792-202 - 565 1.5e-64 211.0 99.9 3 13 9.9e-07 0.0011 19.3 0.3 1 23 215 237 215 237 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF792-202 - 565 1.5e-64 211.0 99.9 4 13 4.8e-07 0.00054 20.3 5.3 1 23 243 265 243 265 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF792-202 - 565 1.5e-64 211.0 99.9 5 13 4.6e-09 5.2e-06 26.6 1.5 1 23 271 293 271 293 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF792-202 - 565 1.5e-64 211.0 99.9 6 13 9.8e-09 1.1e-05 25.6 2.7 1 23 299 321 299 321 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF792-202 - 565 1.5e-64 211.0 99.9 7 13 4.3e-06 0.0049 17.3 3.1 1 23 327 349 327 349 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF792-202 - 565 1.5e-64 211.0 99.9 8 13 6e-07 0.00067 20.0 0.7 1 23 355 377 355 377 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF792-202 - 565 1.5e-64 211.0 99.9 9 13 3.6e-09 4e-06 27.0 0.5 3 23 385 405 385 405 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF792-202 - 565 1.5e-64 211.0 99.9 10 13 2.5e-08 2.8e-05 24.3 0.9 1 23 411 433 411 433 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF792-202 - 565 1.5e-64 211.0 99.9 11 13 1.4e-08 1.6e-05 25.1 1.8 1 23 439 461 439 461 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF792-202 - 565 1.5e-64 211.0 99.9 12 13 1.6e-09 1.8e-06 28.0 1.2 1 23 467 489 467 489 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF792-202 - 565 1.5e-64 211.0 99.9 13 13 6.3e-08 7.1e-05 23.1 0.2 1 23 495 517 495 517 0.98 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZNF792-202 - 565 1.8e-33 112.3 97.6 1 13 0.0058 6.5 7.9 0.5 2 23 66 87 65 88 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF792-202 - 565 1.8e-33 112.3 97.6 2 13 0.07 79 4.5 0.2 6 23 190 209 187 210 0.83 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF792-202 - 565 1.8e-33 112.3 97.6 3 13 0.00084 0.94 10.5 0.3 1 23 215 237 215 238 0.90 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF792-202 - 565 1.8e-33 112.3 97.6 4 13 0.00038 0.42 11.6 5.2 1 23 243 265 243 266 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF792-202 - 565 1.8e-33 112.3 97.6 5 13 0.00022 0.25 12.3 1.3 1 23 271 293 271 294 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF792-202 - 565 1.8e-33 112.3 97.6 6 13 4.9e-05 0.055 14.3 2.1 1 23 299 321 299 322 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF792-202 - 565 1.8e-33 112.3 97.6 7 13 2.3e-06 0.0025 18.5 3.4 1 23 327 349 327 350 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF792-202 - 565 1.8e-33 112.3 97.6 8 13 0.00061 0.68 10.9 0.7 1 23 355 377 355 378 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF792-202 - 565 1.8e-33 112.3 97.6 9 13 5.4e-05 0.06 14.2 0.8 3 23 385 405 383 406 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF792-202 - 565 1.8e-33 112.3 97.6 10 13 2e-05 0.023 15.5 0.9 1 23 411 433 411 434 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF792-202 - 565 1.8e-33 112.3 97.6 11 13 1.5e-05 0.017 15.9 1.3 1 23 439 461 439 462 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF792-202 - 565 1.8e-33 112.3 97.6 12 13 4.1e-07 0.00046 20.8 1.3 1 23 467 489 467 490 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF792-202 - 565 1.8e-33 112.3 97.6 13 13 1.3e-05 0.014 16.2 0.1 1 23 495 517 495 518 0.95 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF792-202 - 565 7.6e-16 57.7 91.9 1 12 0.12 1.4e+02 2.6 0.1 4 26 67 89 66 90 0.78 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF792-202 - 565 7.6e-16 57.7 91.9 2 12 0.061 68 3.6 0.6 2 24 215 237 215 239 0.85 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF792-202 - 565 7.6e-16 57.7 91.9 3 12 0.073 82 3.4 5.1 2 24 243 265 243 268 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF792-202 - 565 7.6e-16 57.7 91.9 4 12 0.014 15 5.7 1.0 2 24 271 293 271 296 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF792-202 - 565 7.6e-16 57.7 91.9 5 12 0.0055 6.2 7.0 2.0 2 24 299 321 299 323 0.95 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF792-202 - 565 7.6e-16 57.7 91.9 6 12 2e-05 0.022 14.8 2.2 1 20 326 345 326 350 0.84 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF792-202 - 565 7.6e-16 57.7 91.9 7 12 0.00049 0.55 10.3 0.9 2 21 355 374 355 379 0.90 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF792-202 - 565 7.6e-16 57.7 91.9 8 12 0.00086 0.97 9.5 1.2 2 24 383 405 383 408 0.91 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF792-202 - 565 7.6e-16 57.7 91.9 9 12 5.6e-06 0.0063 16.5 1.3 2 24 411 433 411 436 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF792-202 - 565 7.6e-16 57.7 91.9 10 12 0.0004 0.45 10.6 1.7 2 24 439 461 439 464 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF792-202 - 565 7.6e-16 57.7 91.9 11 12 9.3e-07 0.001 19.0 1.2 2 25 467 490 467 491 0.95 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF792-202 - 565 7.6e-16 57.7 91.9 12 12 0.00045 0.5 10.4 0.5 2 12 495 505 495 507 0.94 C2H2-type zinc finger zf_UBZ PF18439.1 32 ZNF792-202 - 565 9.5e-09 34.7 57.6 1 13 0.11 1.2e+02 2.4 0.6 2 21 64 84 63 84 0.87 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF792-202 - 565 9.5e-09 34.7 57.6 2 13 0.68 7.6e+02 -0.2 0.0 22 28 179 185 179 185 0.89 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF792-202 - 565 9.5e-09 34.7 57.6 3 13 0.012 13 5.5 0.0 3 21 215 234 213 234 0.87 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF792-202 - 565 9.5e-09 34.7 57.6 4 13 0.041 46 3.7 1.2 3 16 243 257 241 262 0.82 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF792-202 - 565 9.5e-09 34.7 57.6 5 13 0.016 18 5.0 0.1 3 20 271 289 269 290 0.81 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF792-202 - 565 9.5e-09 34.7 57.6 6 13 0.0057 6.4 6.5 0.2 3 14 299 310 297 317 0.84 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF792-202 - 565 9.5e-09 34.7 57.6 7 13 0.012 13 5.5 0.8 3 15 327 339 325 345 0.80 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF792-202 - 565 9.5e-09 34.7 57.6 8 13 0.0066 7.4 6.3 0.2 3 20 355 373 353 374 0.82 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF792-202 - 565 9.5e-09 34.7 57.6 9 13 0.021 24 4.6 0.2 5 21 385 402 383 402 0.91 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF792-202 - 565 9.5e-09 34.7 57.6 10 13 0.0014 1.6 8.4 0.1 3 20 411 429 409 430 0.92 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF792-202 - 565 9.5e-09 34.7 57.6 11 13 0.0015 1.6 8.4 0.1 3 20 439 457 437 458 0.81 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF792-202 - 565 9.5e-09 34.7 57.6 12 13 0.0032 3.5 7.3 0.1 3 19 467 484 465 486 0.76 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF792-202 - 565 9.5e-09 34.7 57.6 13 13 0.0088 9.9 5.9 0.1 3 13 495 505 493 514 0.83 Ubiquitin-Binding Zinc Finger # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF792-202.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF792-202.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF792-202.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF792-202.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF792-202.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:14:42 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZNF793-201 - 406 2.3e-39 132.1 54.3 1 8 0.0058 8.1 7.1 0.1 11 25 184 198 175 199 0.86 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF793-201 - 406 2.3e-39 132.1 54.3 2 8 0.00017 0.24 11.9 0.5 12 24 224 236 219 236 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF793-201 - 406 2.3e-39 132.1 54.3 3 8 5e-10 6.9e-07 29.4 1.3 3 26 243 266 241 266 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF793-201 - 406 2.3e-39 132.1 54.3 4 8 2e-10 2.8e-07 30.7 0.5 2 25 270 293 269 294 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF793-201 - 406 2.3e-39 132.1 54.3 5 8 5.5e-10 7.6e-07 29.3 1.6 4 25 300 321 297 322 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF793-201 - 406 2.3e-39 132.1 54.3 6 8 2.7e-10 3.7e-07 30.3 1.0 2 25 326 349 325 350 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF793-201 - 406 2.3e-39 132.1 54.3 7 8 8e-09 1.1e-05 25.6 0.5 2 24 354 376 354 378 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF793-201 - 406 2.3e-39 132.1 54.3 8 8 0.035 48 4.6 0.3 1 14 381 394 381 396 0.82 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZNF793-201 - 406 3.1e-30 102.9 67.4 1 7 0.0072 9.9 6.8 0.1 3 16 190 203 190 205 0.89 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF793-201 - 406 3.1e-30 102.9 67.4 2 7 1.5e-07 0.0002 21.6 4.5 1 23 227 249 227 249 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF793-201 - 406 3.1e-30 102.9 67.4 3 7 5.6e-09 7.8e-06 26.1 1.4 3 23 257 277 255 277 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF793-201 - 406 3.1e-30 102.9 67.4 4 7 9.8e-07 0.0014 19.0 4.3 1 23 283 305 283 305 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF793-201 - 406 3.1e-30 102.9 67.4 5 7 7.5e-08 0.0001 22.5 0.7 1 23 311 333 311 333 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF793-201 - 406 3.1e-30 102.9 67.4 6 7 6.4e-09 8.9e-06 25.9 4.7 1 23 339 361 339 361 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF793-201 - 406 3.1e-30 102.9 67.4 7 7 1.4e-07 0.0002 21.6 0.3 3 23 369 389 367 389 0.97 Zinc finger, C2H2 type KRAB PF01352.27 42 ZNF793-201 - 406 7.4e-24 83.1 0.0 1 1 1.3e-26 1.7e-23 82.0 0.0 1 42 7 48 7 48 0.99 KRAB box zf-C2H2_4 PF13894.6 24 ZNF793-201 - 406 1.9e-15 56.2 62.6 1 7 0.033 46 5.2 0.1 3 15 190 202 189 205 0.80 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF793-201 - 406 1.9e-15 56.2 62.6 2 7 5.4e-05 0.074 13.9 4.3 1 23 227 249 227 250 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF793-201 - 406 1.9e-15 56.2 62.6 3 7 3.5e-05 0.049 14.5 0.9 2 23 256 277 255 278 0.91 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF793-201 - 406 1.9e-15 56.2 62.6 4 7 0.0016 2.1 9.4 3.6 1 23 283 305 283 306 0.83 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF793-201 - 406 1.9e-15 56.2 62.6 5 7 4.4e-06 0.0061 17.3 0.7 1 23 311 333 311 334 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF793-201 - 406 1.9e-15 56.2 62.6 6 7 4.2e-07 0.00058 20.5 4.2 1 23 339 361 339 362 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF793-201 - 406 1.9e-15 56.2 62.6 7 7 8.8e-05 0.12 13.3 0.2 2 23 368 389 367 390 0.91 C2H2-type zinc finger # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF793-201.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF793-201.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF793-201.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF793-201.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF793-201.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:14:43 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZNF793-202 - 305 9.1e-16 57.5 20.2 1 5 0.0044 5.7 7.6 0.1 11 25 90 104 81 105 0.86 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF793-202 - 305 9.1e-16 57.5 20.2 2 5 0.00013 0.17 12.4 0.5 12 24 130 142 125 142 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF793-202 - 305 9.1e-16 57.5 20.2 3 5 3.7e-10 4.8e-07 29.9 1.3 3 26 149 172 147 172 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF793-202 - 305 9.1e-16 57.5 20.2 4 5 5.9e-06 0.0076 16.6 0.2 2 17 176 191 175 193 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF793-202 - 305 9.1e-16 57.5 20.2 5 5 0.39 5e+02 1.4 0.1 6 13 207 214 200 218 0.71 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZNF793-202 - 305 4.9e-13 48.7 17.6 1 3 0.0055 7.1 7.3 0.1 3 16 96 109 96 111 0.89 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF793-202 - 305 4.9e-13 48.7 17.6 2 3 1.1e-07 0.00014 22.1 4.5 1 23 133 155 133 155 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF793-202 - 305 4.9e-13 48.7 17.6 3 3 4.2e-09 5.4e-06 26.6 1.4 3 23 163 183 161 183 0.97 Zinc finger, C2H2 type # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF793-202.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF793-202.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF793-202.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF793-202.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF793-202.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:14:43 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF793-203.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF793-203.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF793-203.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF793-203.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF793-203.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:14:43 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF793-204.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF793-204.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF793-204.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF793-204.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF793-204.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:14:44 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZNF793-205 - 406 2.3e-39 132.1 54.3 1 8 0.0058 8.1 7.1 0.1 11 25 184 198 175 199 0.86 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF793-205 - 406 2.3e-39 132.1 54.3 2 8 0.00017 0.24 11.9 0.5 12 24 224 236 219 236 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF793-205 - 406 2.3e-39 132.1 54.3 3 8 5e-10 6.9e-07 29.4 1.3 3 26 243 266 241 266 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF793-205 - 406 2.3e-39 132.1 54.3 4 8 2e-10 2.8e-07 30.7 0.5 2 25 270 293 269 294 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF793-205 - 406 2.3e-39 132.1 54.3 5 8 5.5e-10 7.6e-07 29.3 1.6 4 25 300 321 297 322 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF793-205 - 406 2.3e-39 132.1 54.3 6 8 2.7e-10 3.7e-07 30.3 1.0 2 25 326 349 325 350 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF793-205 - 406 2.3e-39 132.1 54.3 7 8 8e-09 1.1e-05 25.6 0.5 2 24 354 376 354 378 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF793-205 - 406 2.3e-39 132.1 54.3 8 8 0.035 48 4.6 0.3 1 14 381 394 381 396 0.82 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZNF793-205 - 406 3.1e-30 102.9 67.4 1 7 0.0072 9.9 6.8 0.1 3 16 190 203 190 205 0.89 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF793-205 - 406 3.1e-30 102.9 67.4 2 7 1.5e-07 0.0002 21.6 4.5 1 23 227 249 227 249 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF793-205 - 406 3.1e-30 102.9 67.4 3 7 5.6e-09 7.8e-06 26.1 1.4 3 23 257 277 255 277 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF793-205 - 406 3.1e-30 102.9 67.4 4 7 9.8e-07 0.0014 19.0 4.3 1 23 283 305 283 305 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF793-205 - 406 3.1e-30 102.9 67.4 5 7 7.5e-08 0.0001 22.5 0.7 1 23 311 333 311 333 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF793-205 - 406 3.1e-30 102.9 67.4 6 7 6.4e-09 8.9e-06 25.9 4.7 1 23 339 361 339 361 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF793-205 - 406 3.1e-30 102.9 67.4 7 7 1.4e-07 0.0002 21.6 0.3 3 23 369 389 367 389 0.97 Zinc finger, C2H2 type KRAB PF01352.27 42 ZNF793-205 - 406 7.4e-24 83.1 0.0 1 1 1.3e-26 1.7e-23 82.0 0.0 1 42 7 48 7 48 0.99 KRAB box zf-C2H2_4 PF13894.6 24 ZNF793-205 - 406 1.9e-15 56.2 62.6 1 7 0.033 46 5.2 0.1 3 15 190 202 189 205 0.80 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF793-205 - 406 1.9e-15 56.2 62.6 2 7 5.4e-05 0.074 13.9 4.3 1 23 227 249 227 250 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF793-205 - 406 1.9e-15 56.2 62.6 3 7 3.5e-05 0.049 14.5 0.9 2 23 256 277 255 278 0.91 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF793-205 - 406 1.9e-15 56.2 62.6 4 7 0.0016 2.1 9.4 3.6 1 23 283 305 283 306 0.83 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF793-205 - 406 1.9e-15 56.2 62.6 5 7 4.4e-06 0.0061 17.3 0.7 1 23 311 333 311 334 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF793-205 - 406 1.9e-15 56.2 62.6 6 7 4.2e-07 0.00058 20.5 4.2 1 23 339 361 339 362 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF793-205 - 406 1.9e-15 56.2 62.6 7 7 8.8e-05 0.12 13.3 0.2 2 23 368 389 367 390 0.91 C2H2-type zinc finger # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF793-205.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF793-205.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF793-205.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF793-205.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF793-205.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:14:44 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF793-206.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF793-206.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF793-206.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF793-206.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF793-206.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:14:44 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- KRAB PF01352.27 42 ZNF793-207 - 131 1.1e-24 85.7 0.1 1 2 1.5e-28 2.7e-24 84.5 0.0 1 42 7 48 7 48 0.99 KRAB box KRAB PF01352.27 42 ZNF793-207 - 131 1.1e-24 85.7 0.1 2 2 0.26 4.6e+03 -2.6 0.0 6 15 55 64 54 68 0.82 KRAB box # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF793-207.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF793-207.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF793-207.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF793-207.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF793-207.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:14:45 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZNF793-208 - 312 2.3e-42 141.6 47.8 1 8 0.0052 5.8 7.5 0.1 11 25 90 104 81 105 0.86 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF793-208 - 312 2.3e-42 141.6 47.8 2 8 0.00016 0.17 12.3 0.5 12 24 130 142 125 142 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF793-208 - 312 2.3e-42 141.6 47.8 3 8 4.4e-10 4.9e-07 29.9 1.3 3 26 149 172 147 172 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF793-208 - 312 2.3e-42 141.6 47.8 4 8 1.8e-10 2e-07 31.1 0.5 2 25 176 199 175 200 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF793-208 - 312 2.3e-42 141.6 47.8 5 8 4.9e-10 5.5e-07 29.7 1.6 4 25 206 227 203 228 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF793-208 - 312 2.3e-42 141.6 47.8 6 8 2.4e-10 2.6e-07 30.7 1.0 2 25 232 255 231 256 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF793-208 - 312 2.3e-42 141.6 47.8 7 8 7.1e-09 7.9e-06 26.1 0.5 2 24 260 282 260 284 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF793-208 - 312 2.3e-42 141.6 47.8 8 8 0.031 35 5.1 0.3 1 14 287 300 287 302 0.82 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZNF793-208 - 312 1.3e-34 116.7 55.7 1 7 0.0065 7.3 7.3 0.1 3 16 96 109 96 111 0.89 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF793-208 - 312 1.3e-34 116.7 55.7 2 7 1.3e-07 0.00015 22.1 4.5 1 23 133 155 133 155 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF793-208 - 312 1.3e-34 116.7 55.7 3 7 5e-09 5.6e-06 26.5 1.4 3 23 163 183 161 183 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF793-208 - 312 1.3e-34 116.7 55.7 4 7 8.7e-07 0.00097 19.5 4.3 1 23 189 211 189 211 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF793-208 - 312 1.3e-34 116.7 55.7 5 7 6.6e-08 7.4e-05 23.0 0.7 1 23 217 239 217 239 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF793-208 - 312 1.3e-34 116.7 55.7 6 7 5.7e-09 6.4e-06 26.3 4.7 1 23 245 267 245 267 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF793-208 - 312 1.3e-34 116.7 55.7 7 7 1.3e-07 0.00014 22.1 0.3 3 23 275 295 273 295 0.97 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZNF793-208 - 312 1.9e-19 68.7 52.3 1 7 0.03 33 5.7 0.1 3 15 96 108 95 111 0.80 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF793-208 - 312 1.9e-19 68.7 52.3 2 7 4.7e-05 0.053 14.4 4.3 1 23 133 155 133 156 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF793-208 - 312 1.9e-19 68.7 52.3 3 7 3.1e-05 0.035 14.9 0.9 2 23 162 183 161 184 0.91 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF793-208 - 312 1.9e-19 68.7 52.3 4 7 0.0014 1.5 9.8 3.6 1 23 189 211 189 212 0.83 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF793-208 - 312 1.9e-19 68.7 52.3 5 7 3.9e-06 0.0043 17.8 0.7 1 23 217 239 217 240 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF793-208 - 312 1.9e-19 68.7 52.3 6 7 3.7e-07 0.00042 20.9 4.2 1 23 245 267 245 268 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF793-208 - 312 1.9e-19 68.7 52.3 7 7 7.8e-05 0.087 13.7 0.2 2 23 274 295 273 296 0.91 C2H2-type zinc finger # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF793-208.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF793-208.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF793-208.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF793-208.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF793-208.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:14:45 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- KRAB PF01352.27 42 ZNF793-209 - 138 1.4e-24 85.4 0.1 1 2 1.7e-28 3e-24 84.4 0.0 1 42 7 48 7 48 0.99 KRAB box KRAB PF01352.27 42 ZNF793-209 - 138 1.4e-24 85.4 0.1 2 2 0.28 4.9e+03 -2.7 0.0 6 15 55 64 54 68 0.82 KRAB box # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF793-209.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF793-209.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF793-209.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF793-209.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF793-209.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:14:46 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF793-210.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF793-210.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF793-210.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF793-210.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF793-210.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:14:46 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZNF799-201 - 611 4e-116 374.7 166.8 1 18 1.6 1.8e+03 -0.3 0.2 11 21 95 105 94 107 0.82 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF799-201 - 611 4e-116 374.7 166.8 2 18 4.4e-11 4.9e-08 33.0 1.3 1 26 123 148 123 148 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF799-201 - 611 4e-116 374.7 166.8 3 18 1.2e-09 1.3e-06 28.5 0.1 1 24 151 174 151 175 0.98 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF799-201 - 611 4e-116 374.7 166.8 4 18 3.6e-10 4e-07 30.2 2.9 5 25 183 203 180 203 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF799-201 - 611 4e-116 374.7 166.8 5 18 4.4e-10 5e-07 29.9 1.6 2 24 208 230 207 231 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF799-201 - 611 4e-116 374.7 166.8 6 18 2.5e-10 2.8e-07 30.6 3.8 4 25 238 259 236 260 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF799-201 - 611 4e-116 374.7 166.8 7 18 7.5e-09 8.5e-06 26.0 3.1 1 26 263 288 263 288 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF799-201 - 611 4e-116 374.7 166.8 8 18 4.7e-07 0.00053 20.3 2.3 2 25 292 315 291 316 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF799-201 - 611 4e-116 374.7 166.8 9 18 1.4e-09 1.5e-06 28.3 1.7 1 23 319 341 319 344 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF799-201 - 611 4e-116 374.7 166.8 10 18 6e-10 6.8e-07 29.4 1.2 2 25 348 371 347 372 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF799-201 - 611 4e-116 374.7 166.8 11 18 8.8e-09 9.8e-06 25.8 3.8 2 24 376 398 376 399 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF799-201 - 611 4e-116 374.7 166.8 12 18 8.1e-08 9.1e-05 22.7 1.4 1 24 403 425 403 426 0.88 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF799-201 - 611 4e-116 374.7 166.8 13 18 2.5e-08 2.8e-05 24.3 3.4 2 25 431 454 430 455 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF799-201 - 611 4e-116 374.7 166.8 14 18 4.6e-11 5.2e-08 33.0 4.0 2 26 459 483 458 483 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF799-201 - 611 4e-116 374.7 166.8 15 18 4e-11 4.5e-08 33.2 0.5 1 25 486 510 486 510 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF799-201 - 611 4e-116 374.7 166.8 16 18 1.5e-09 1.7e-06 28.2 2.2 4 26 517 539 515 539 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF799-201 - 611 4e-116 374.7 166.8 17 18 4.2e-11 4.7e-08 33.1 0.3 2 26 543 567 543 567 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF799-201 - 611 4e-116 374.7 166.8 18 18 4.5e-07 0.0005 20.4 3.7 5 26 578 600 570 600 0.78 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZNF799-201 - 611 1e-60 198.9 164.2 1 18 0.036 40 4.9 1.4 7 23 115 131 102 131 0.88 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF799-201 - 611 1e-60 198.9 164.2 2 18 8.1e-09 9.1e-06 25.9 0.1 1 21 137 157 137 158 0.95 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF799-201 - 611 1e-60 198.9 164.2 3 18 3.5e-05 0.039 14.4 1.8 1 23 165 187 165 187 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF799-201 - 611 1e-60 198.9 164.2 4 18 5e-06 0.0056 17.1 3.0 1 23 193 215 193 215 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF799-201 - 611 1e-60 198.9 164.2 5 18 0.0001 0.12 12.9 3.3 1 23 221 243 221 243 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF799-201 - 611 1e-60 198.9 164.2 6 18 1.1e-07 0.00012 22.3 1.2 1 23 249 271 249 271 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF799-201 - 611 1e-60 198.9 164.2 7 18 1.4e-05 0.016 15.7 2.8 1 23 277 299 277 299 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF799-201 - 611 1e-60 198.9 164.2 8 18 1.2e-05 0.013 15.9 4.0 1 23 305 327 305 327 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF799-201 - 611 1e-60 198.9 164.2 9 18 9.4e-07 0.001 19.4 3.4 1 23 333 355 333 355 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF799-201 - 611 1e-60 198.9 164.2 10 18 1.1e-06 0.0012 19.1 1.9 1 23 361 383 361 383 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF799-201 - 611 1e-60 198.9 164.2 11 18 1.3e-06 0.0015 18.9 1.6 1 23 389 411 389 411 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF799-201 - 611 1e-60 198.9 164.2 12 18 0.0015 1.7 9.3 1.3 5 23 420 438 417 438 0.94 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF799-201 - 611 1e-60 198.9 164.2 13 18 0.00019 0.22 12.1 3.9 1 23 444 466 444 466 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF799-201 - 611 1e-60 198.9 164.2 14 18 3.9e-07 0.00044 20.6 1.8 1 23 472 494 472 494 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF799-201 - 611 1e-60 198.9 164.2 15 18 0.00022 0.25 11.9 1.4 1 23 500 522 500 522 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF799-201 - 611 1e-60 198.9 164.2 16 18 9.2e-06 0.01 16.2 2.0 1 23 528 550 528 550 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF799-201 - 611 1e-60 198.9 164.2 17 18 7.9e-08 8.8e-05 22.7 2.0 1 23 556 578 556 578 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF799-201 - 611 1e-60 198.9 164.2 18 18 9.4e-07 0.001 19.4 1.9 3 23 591 611 589 611 0.97 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZNF799-201 - 611 6.8e-52 169.6 156.8 1 18 0.17 2e+02 3.3 0.4 7 23 115 131 115 132 0.89 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF799-201 - 611 6.8e-52 169.6 156.8 2 18 3.8e-07 0.00042 20.9 0.1 1 21 137 157 137 159 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF799-201 - 611 6.8e-52 169.6 156.8 3 18 0.00053 0.59 11.1 2.0 1 23 165 187 165 188 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF799-201 - 611 6.8e-52 169.6 156.8 4 18 7.7e-06 0.0086 16.8 2.5 1 23 193 215 193 216 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF799-201 - 611 6.8e-52 169.6 156.8 5 18 1.1e-05 0.013 16.3 3.0 1 23 221 243 221 244 0.97 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF799-201 - 611 6.8e-52 169.6 156.8 6 18 1.7e-06 0.0019 18.9 0.9 1 23 249 271 249 272 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF799-201 - 611 6.8e-52 169.6 156.8 7 18 4.8e-05 0.054 14.4 2.5 1 23 277 299 277 300 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF799-201 - 611 6.8e-52 169.6 156.8 8 18 1.3e-06 0.0014 19.3 3.4 1 23 305 327 305 328 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF799-201 - 611 6.8e-52 169.6 156.8 9 18 4.4e-05 0.05 14.5 2.6 1 23 333 355 333 356 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF799-201 - 611 6.8e-52 169.6 156.8 10 18 9.6e-06 0.011 16.5 1.8 1 23 361 383 361 384 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF799-201 - 611 6.8e-52 169.6 156.8 11 18 9.4e-06 0.011 16.6 1.1 1 23 389 411 389 412 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF799-201 - 611 6.8e-52 169.6 156.8 12 18 0.0028 3.1 8.9 1.2 1 23 417 438 417 439 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF799-201 - 611 6.8e-52 169.6 156.8 13 18 5.8e-06 0.0065 17.2 3.6 1 23 444 466 444 467 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF799-201 - 611 6.8e-52 169.6 156.8 14 18 0.0024 2.7 9.1 1.6 1 23 472 494 472 495 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF799-201 - 611 6.8e-52 169.6 156.8 15 18 0.00094 1.1 10.3 1.9 1 23 500 522 500 523 0.90 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF799-201 - 611 6.8e-52 169.6 156.8 16 18 3.3e-05 0.037 14.9 1.7 1 23 528 550 528 551 0.83 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF799-201 - 611 6.8e-52 169.6 156.8 17 18 6.5e-07 0.00073 20.2 2.0 1 23 556 578 556 579 0.97 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF799-201 - 611 6.8e-52 169.6 156.8 18 18 4.2e-06 0.0047 17.7 1.7 2 23 590 611 589 611 0.95 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF799-201 - 611 1.6e-29 101.3 152.1 1 18 2.9 3.2e+03 -1.7 0.8 8 22 115 129 115 132 0.84 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF799-201 - 611 1.6e-29 101.3 152.1 2 18 1.4e-07 0.00016 21.6 0.4 2 22 137 157 137 158 0.95 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF799-201 - 611 1.6e-29 101.3 152.1 3 18 0.013 14 5.8 0.8 2 11 165 174 165 174 0.96 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF799-201 - 611 1.6e-29 101.3 152.1 4 18 0.0013 1.5 9.0 1.9 2 12 193 203 193 216 0.86 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF799-201 - 611 1.6e-29 101.3 152.1 5 18 0.00039 0.44 10.6 2.0 2 14 221 233 220 244 0.84 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF799-201 - 611 1.6e-29 101.3 152.1 6 18 4.9e-05 0.055 13.5 1.1 2 25 249 272 249 274 0.92 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF799-201 - 611 1.6e-29 101.3 152.1 7 18 0.0042 4.7 7.3 0.3 2 12 277 287 277 296 0.89 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF799-201 - 611 1.6e-29 101.3 152.1 8 18 0.0057 6.4 6.9 3.0 2 24 305 327 305 330 0.78 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF799-201 - 611 1.6e-29 101.3 152.1 9 18 0.0044 4.9 7.3 0.4 2 11 333 342 332 355 0.84 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF799-201 - 611 1.6e-29 101.3 152.1 10 18 0.00069 0.77 9.8 0.8 2 13 361 372 361 385 0.88 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF799-201 - 611 1.6e-29 101.3 152.1 11 18 0.0012 1.4 9.0 1.4 2 24 389 411 389 414 0.90 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF799-201 - 611 1.6e-29 101.3 152.1 12 18 1.2 1.3e+03 -0.5 1.3 5 24 420 438 417 441 0.81 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF799-201 - 611 1.6e-29 101.3 152.1 13 18 9.9e-06 0.011 15.7 4.8 2 24 444 466 444 469 0.96 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF799-201 - 611 1.6e-29 101.3 152.1 14 18 0.001 1.1 9.3 1.3 2 17 472 487 472 496 0.80 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF799-201 - 611 1.6e-29 101.3 152.1 15 18 0.00036 0.4 10.7 0.2 2 12 500 510 500 513 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF799-201 - 611 1.6e-29 101.3 152.1 16 18 0.0015 1.6 8.8 3.0 2 24 528 550 528 553 0.87 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF799-201 - 611 1.6e-29 101.3 152.1 17 18 2.3e-09 2.5e-06 27.3 5.3 2 27 556 581 556 581 0.97 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF799-201 - 611 1.6e-29 101.3 152.1 18 18 7e-07 0.00079 19.4 4.8 2 24 589 611 589 611 0.97 C2H2-type zinc finger zf-C2H2_11 PF16622.5 29 ZNF799-201 - 611 2.6e-17 62.3 88.4 1 15 1.8e-06 0.0021 17.8 0.1 6 24 138 156 136 158 0.92 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF799-201 - 611 2.6e-17 62.3 88.4 2 15 0.3 3.4e+02 1.1 0.1 5 14 165 174 163 178 0.83 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF799-201 - 611 2.6e-17 62.3 88.4 3 15 1.6 1.8e+03 -1.2 0.5 7 23 195 211 192 213 0.74 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF799-201 - 611 2.6e-17 62.3 88.4 4 15 6.6e-06 0.0074 16.0 0.3 7 23 251 267 248 269 0.94 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF799-201 - 611 2.6e-17 62.3 88.4 5 15 0.00029 0.32 10.8 0.4 6 26 278 298 273 299 0.89 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF799-201 - 611 2.6e-17 62.3 88.4 6 15 0.059 66 3.4 0.3 5 23 305 323 302 326 0.90 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF799-201 - 611 2.6e-17 62.3 88.4 7 15 0.011 13 5.7 3.3 7 26 335 354 333 355 0.93 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF799-201 - 611 2.6e-17 62.3 88.4 8 15 0.5 5.6e+02 0.4 0.0 5 15 361 371 358 380 0.73 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF799-201 - 611 2.6e-17 62.3 88.4 9 15 1.4e-05 0.016 14.9 0.3 5 23 389 407 386 409 0.94 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF799-201 - 611 2.6e-17 62.3 88.4 10 15 0.014 15 5.4 1.8 6 25 445 464 442 466 0.92 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF799-201 - 611 2.6e-17 62.3 88.4 11 15 0.078 87 3.0 0.1 6 26 473 493 470 494 0.90 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF799-201 - 611 2.6e-17 62.3 88.4 12 15 0.085 95 2.9 0.4 6 26 501 521 498 522 0.81 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF799-201 - 611 2.6e-17 62.3 88.4 13 15 0.025 27 4.6 0.3 6 18 529 541 526 547 0.79 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF799-201 - 611 2.6e-17 62.3 88.4 14 15 6.5e-06 0.0073 16.0 0.2 5 23 556 574 553 576 0.90 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF799-201 - 611 2.6e-17 62.3 88.4 15 15 1.2e-05 0.013 15.2 0.3 7 23 591 607 586 609 0.91 zinc-finger C2H2-type zf-C2H2_jaz PF12171.8 27 ZNF799-201 - 611 3.2e-15 56.0 107.1 1 18 0.91 1e+03 0.2 0.1 9 22 116 129 115 129 0.82 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF799-201 - 611 3.2e-15 56.0 107.1 2 18 9.4e-05 0.11 12.9 0.0 2 21 137 156 136 157 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF799-201 - 611 3.2e-15 56.0 107.1 3 18 0.012 14 6.1 0.2 2 23 165 186 164 187 0.85 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF799-201 - 611 3.2e-15 56.0 107.1 4 18 0.066 74 3.8 1.8 2 23 193 214 192 215 0.84 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF799-201 - 611 3.2e-15 56.0 107.1 5 18 0.18 2e+02 2.4 1.5 2 23 221 242 220 244 0.78 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF799-201 - 611 3.2e-15 56.0 107.1 6 18 0.0026 2.9 8.3 0.1 2 24 249 271 248 271 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF799-201 - 611 3.2e-15 56.0 107.1 7 18 0.017 19 5.7 0.3 2 21 277 296 276 297 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF799-201 - 611 3.2e-15 56.0 107.1 8 18 0.0003 0.33 11.3 0.7 2 24 305 327 304 327 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF799-201 - 611 3.2e-15 56.0 107.1 9 18 0.0095 11 6.5 0.2 2 21 333 352 332 353 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF799-201 - 611 3.2e-15 56.0 107.1 10 18 0.00014 0.16 12.3 0.5 2 24 361 383 360 383 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF799-201 - 611 3.2e-15 56.0 107.1 11 18 0.033 37 4.8 0.2 2 24 389 411 388 411 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF799-201 - 611 3.2e-15 56.0 107.1 12 18 0.048 54 4.2 0.4 7 24 421 438 421 439 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF799-201 - 611 3.2e-15 56.0 107.1 13 18 0.18 2.1e+02 2.4 1.7 2 12 444 454 443 466 0.82 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF799-201 - 611 3.2e-15 56.0 107.1 14 18 0.046 52 4.3 0.6 2 21 472 491 471 492 0.83 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF799-201 - 611 3.2e-15 56.0 107.1 15 18 0.089 1e+02 3.4 0.2 2 12 500 510 499 510 0.88 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF799-201 - 611 3.2e-15 56.0 107.1 16 18 0.00016 0.18 12.2 0.6 2 24 528 550 527 550 0.95 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF799-201 - 611 3.2e-15 56.0 107.1 17 18 6.2e-05 0.07 13.4 1.8 2 24 556 578 555 581 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF799-201 - 611 3.2e-15 56.0 107.1 18 18 0.00052 0.58 10.5 0.4 4 24 591 611 588 611 0.95 Zinc-finger double-stranded RNA-binding Zn-ribbon_8 PF09723.10 40 ZNF799-201 - 611 9.2e-12 44.9 93.3 1 18 4.4 4.9e+03 -2.3 0.0 9 20 46 57 39 62 0.79 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF799-201 - 611 9.2e-12 44.9 93.3 2 18 0.0038 4.3 7.5 0.1 6 18 137 149 136 161 0.83 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF799-201 - 611 9.2e-12 44.9 93.3 3 18 0.0017 1.9 8.7 2.6 6 34 165 200 164 203 0.81 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF799-201 - 611 9.2e-12 44.9 93.3 4 18 0.13 1.5e+02 2.6 6.3 6 34 193 228 192 231 0.75 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF799-201 - 611 9.2e-12 44.9 93.3 5 18 0.033 37 4.6 6.1 6 34 221 256 220 260 0.78 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF799-201 - 611 9.2e-12 44.9 93.3 6 18 0.0053 6 7.1 0.3 6 21 249 264 248 275 0.78 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF799-201 - 611 9.2e-12 44.9 93.3 7 18 0.00013 0.14 12.3 2.0 6 34 277 312 276 317 0.78 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF799-201 - 611 9.2e-12 44.9 93.3 8 18 0.011 12 6.1 3.9 7 35 306 341 305 343 0.70 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF799-201 - 611 9.2e-12 44.9 93.3 9 18 0.00069 0.78 9.9 1.4 6 34 333 368 331 371 0.82 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF799-201 - 611 9.2e-12 44.9 93.3 10 18 0.0032 3.5 7.8 2.8 7 35 362 397 361 400 0.73 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF799-201 - 611 9.2e-12 44.9 93.3 11 18 0.048 54 4.0 3.3 6 21 389 404 387 424 0.65 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF799-201 - 611 9.2e-12 44.9 93.3 12 18 1.2 1.4e+03 -0.5 0.3 6 20 417 430 416 438 0.74 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF799-201 - 611 9.2e-12 44.9 93.3 13 18 0.033 37 4.5 8.9 6 34 444 479 443 481 0.74 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF799-201 - 611 9.2e-12 44.9 93.3 14 18 0.00078 0.88 9.7 4.6 6 34 472 507 471 512 0.85 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF799-201 - 611 9.2e-12 44.9 93.3 15 18 0.00086 0.96 9.6 7.3 6 35 500 536 498 541 0.80 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF799-201 - 611 9.2e-12 44.9 93.3 16 18 0.0022 2.5 8.3 0.8 6 18 528 540 526 551 0.79 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF799-201 - 611 9.2e-12 44.9 93.3 17 18 0.00051 0.58 10.3 0.1 6 25 556 575 555 586 0.86 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF799-201 - 611 9.2e-12 44.9 93.3 18 18 0.0039 4.3 7.5 0.1 6 24 589 607 587 611 0.82 Zinc ribbon domain # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF799-201.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF799-201.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF799-201.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF799-201.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF799-201.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:14:46 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZNF799-202 - 643 1.2e-115 373.3 166.8 1 18 1.9 1.9e+03 -0.4 0.2 11 21 127 137 126 139 0.82 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF799-202 - 643 1.2e-115 373.3 166.8 2 18 5.2e-11 5.2e-08 33.0 1.3 1 26 155 180 155 180 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF799-202 - 643 1.2e-115 373.3 166.8 3 18 1.4e-09 1.4e-06 28.4 0.1 1 24 183 206 183 207 0.98 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF799-202 - 643 1.2e-115 373.3 166.8 4 18 4.3e-10 4.2e-07 30.1 2.9 5 25 215 235 212 235 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF799-202 - 643 1.2e-115 373.3 166.8 5 18 5.3e-10 5.3e-07 29.8 1.6 2 24 240 262 239 263 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF799-202 - 643 1.2e-115 373.3 166.8 6 18 3e-10 3e-07 30.6 3.8 4 25 270 291 268 292 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF799-202 - 643 1.2e-115 373.3 166.8 7 18 9e-09 9e-06 25.9 3.1 1 26 295 320 295 320 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF799-202 - 643 1.2e-115 373.3 166.8 8 18 5.6e-07 0.00056 20.2 2.3 2 25 324 347 323 348 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF799-202 - 643 1.2e-115 373.3 166.8 9 18 1.6e-09 1.6e-06 28.2 1.7 1 23 351 373 351 376 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF799-202 - 643 1.2e-115 373.3 166.8 10 18 7.2e-10 7.2e-07 29.4 1.2 2 25 380 403 379 404 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF799-202 - 643 1.2e-115 373.3 166.8 11 18 1e-08 1e-05 25.7 3.8 2 24 408 430 408 431 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF799-202 - 643 1.2e-115 373.3 166.8 12 18 9.7e-08 9.7e-05 22.6 1.4 1 24 435 457 435 458 0.88 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF799-202 - 643 1.2e-115 373.3 166.8 13 18 3e-08 3e-05 24.2 3.4 2 25 463 486 462 487 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF799-202 - 643 1.2e-115 373.3 166.8 14 18 5.5e-11 5.5e-08 32.9 4.0 2 26 491 515 490 515 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF799-202 - 643 1.2e-115 373.3 166.8 15 18 4.8e-11 4.8e-08 33.1 0.5 1 25 518 542 518 542 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF799-202 - 643 1.2e-115 373.3 166.8 16 18 1.9e-09 1.8e-06 28.1 2.2 4 26 549 571 547 571 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF799-202 - 643 1.2e-115 373.3 166.8 17 18 5e-11 5e-08 33.0 0.3 2 26 575 599 575 599 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF799-202 - 643 1.2e-115 373.3 166.8 18 18 5.4e-07 0.00053 20.3 3.7 5 26 610 632 602 632 0.78 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZNF799-202 - 643 2.9e-60 197.5 164.2 1 18 0.043 43 4.8 1.4 7 23 147 163 134 163 0.88 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF799-202 - 643 2.9e-60 197.5 164.2 2 18 9.7e-09 9.6e-06 25.8 0.1 1 21 169 189 169 190 0.95 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF799-202 - 643 2.9e-60 197.5 164.2 3 18 4.2e-05 0.042 14.3 1.8 1 23 197 219 197 219 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF799-202 - 643 2.9e-60 197.5 164.2 4 18 6e-06 0.006 17.0 3.0 1 23 225 247 225 247 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF799-202 - 643 2.9e-60 197.5 164.2 5 18 0.00012 0.12 12.9 3.3 1 23 253 275 253 275 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF799-202 - 643 2.9e-60 197.5 164.2 6 18 1.3e-07 0.00013 22.2 1.2 1 23 281 303 281 303 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF799-202 - 643 2.9e-60 197.5 164.2 7 18 1.7e-05 0.017 15.6 2.8 1 23 309 331 309 331 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF799-202 - 643 2.9e-60 197.5 164.2 8 18 1.4e-05 0.014 15.8 4.0 1 23 337 359 337 359 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF799-202 - 643 2.9e-60 197.5 164.2 9 18 1.1e-06 0.0011 19.3 3.4 1 23 365 387 365 387 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF799-202 - 643 2.9e-60 197.5 164.2 10 18 1.3e-06 0.0013 19.1 1.9 1 23 393 415 393 415 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF799-202 - 643 2.9e-60 197.5 164.2 11 18 1.5e-06 0.0015 18.8 1.6 1 23 421 443 421 443 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF799-202 - 643 2.9e-60 197.5 164.2 12 18 0.0018 1.8 9.2 1.3 5 23 452 470 449 470 0.94 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF799-202 - 643 2.9e-60 197.5 164.2 13 18 0.00023 0.23 12.0 3.9 1 23 476 498 476 498 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF799-202 - 643 2.9e-60 197.5 164.2 14 18 4.7e-07 0.00046 20.5 1.8 1 23 504 526 504 526 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF799-202 - 643 2.9e-60 197.5 164.2 15 18 0.00027 0.27 11.8 1.4 1 23 532 554 532 554 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF799-202 - 643 2.9e-60 197.5 164.2 16 18 1.1e-05 0.011 16.2 2.0 1 23 560 582 560 582 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF799-202 - 643 2.9e-60 197.5 164.2 17 18 9.4e-08 9.4e-05 22.7 2.0 1 23 588 610 588 610 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF799-202 - 643 2.9e-60 197.5 164.2 18 18 1.1e-06 0.0011 19.3 1.9 3 23 623 643 621 643 0.97 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZNF799-202 - 643 2e-51 168.2 156.8 1 18 0.21 2.1e+02 3.2 0.4 7 23 147 163 147 164 0.89 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF799-202 - 643 2e-51 168.2 156.8 2 18 4.5e-07 0.00045 20.8 0.1 1 21 169 189 169 191 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF799-202 - 643 2e-51 168.2 156.8 3 18 0.00063 0.63 11.0 2.0 1 23 197 219 197 220 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF799-202 - 643 2e-51 168.2 156.8 4 18 9.2e-06 0.0091 16.8 2.5 1 23 225 247 225 248 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF799-202 - 643 2e-51 168.2 156.8 5 18 1.3e-05 0.013 16.2 3.0 1 23 253 275 253 276 0.97 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF799-202 - 643 2e-51 168.2 156.8 6 18 2e-06 0.002 18.8 0.9 1 23 281 303 281 304 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF799-202 - 643 2e-51 168.2 156.8 7 18 5.7e-05 0.057 14.3 2.5 1 23 309 331 309 332 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF799-202 - 643 2e-51 168.2 156.8 8 18 1.5e-06 0.0015 19.2 3.4 1 23 337 359 337 360 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF799-202 - 643 2e-51 168.2 156.8 9 18 5.3e-05 0.053 14.4 2.6 1 23 365 387 365 388 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF799-202 - 643 2e-51 168.2 156.8 10 18 1.2e-05 0.011 16.4 1.8 1 23 393 415 393 416 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF799-202 - 643 2e-51 168.2 156.8 11 18 1.1e-05 0.011 16.5 1.1 1 23 421 443 421 444 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF799-202 - 643 2e-51 168.2 156.8 12 18 0.0033 3.3 8.8 1.2 1 23 449 470 449 471 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF799-202 - 643 2e-51 168.2 156.8 13 18 7e-06 0.0069 17.1 3.6 1 23 476 498 476 499 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF799-202 - 643 2e-51 168.2 156.8 14 18 0.0029 2.8 9.0 1.6 1 23 504 526 504 527 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF799-202 - 643 2e-51 168.2 156.8 15 18 0.0011 1.1 10.3 1.9 1 23 532 554 532 555 0.90 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF799-202 - 643 2e-51 168.2 156.8 16 18 4e-05 0.04 14.8 1.7 1 23 560 582 560 583 0.83 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF799-202 - 643 2e-51 168.2 156.8 17 18 7.7e-07 0.00077 20.1 2.0 1 23 588 610 588 611 0.97 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF799-202 - 643 2e-51 168.2 156.8 18 18 5e-06 0.005 17.6 1.7 2 23 622 643 621 643 0.95 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF799-202 - 643 4.5e-29 99.9 152.1 1 18 3.4 3.4e+03 -1.8 0.8 8 22 147 161 147 164 0.84 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF799-202 - 643 4.5e-29 99.9 152.1 2 18 1.7e-07 0.00016 21.5 0.4 2 22 169 189 169 190 0.95 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF799-202 - 643 4.5e-29 99.9 152.1 3 18 0.015 15 5.7 0.8 2 11 197 206 197 206 0.96 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF799-202 - 643 4.5e-29 99.9 152.1 4 18 0.0015 1.5 8.9 1.9 2 12 225 235 225 248 0.86 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF799-202 - 643 4.5e-29 99.9 152.1 5 18 0.00047 0.47 10.5 2.0 2 14 253 265 252 276 0.84 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF799-202 - 643 4.5e-29 99.9 152.1 6 18 5.9e-05 0.059 13.4 1.1 2 25 281 304 281 306 0.92 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF799-202 - 643 4.5e-29 99.9 152.1 7 18 0.005 5 7.3 0.3 2 12 309 319 309 328 0.89 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF799-202 - 643 4.5e-29 99.9 152.1 8 18 0.0068 6.7 6.8 3.0 2 24 337 359 337 362 0.78 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF799-202 - 643 4.5e-29 99.9 152.1 9 18 0.0052 5.2 7.2 0.4 2 11 365 374 364 387 0.84 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF799-202 - 643 4.5e-29 99.9 152.1 10 18 0.00082 0.82 9.8 0.8 2 13 393 404 393 417 0.88 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF799-202 - 643 4.5e-29 99.9 152.1 11 18 0.0015 1.4 9.0 1.4 2 24 421 443 421 446 0.90 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF799-202 - 643 4.5e-29 99.9 152.1 12 18 1.4 1.4e+03 -0.5 1.3 5 24 452 470 449 473 0.81 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF799-202 - 643 4.5e-29 99.9 152.1 13 18 1.2e-05 0.012 15.6 4.8 2 24 476 498 476 501 0.96 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF799-202 - 643 4.5e-29 99.9 152.1 14 18 0.0012 1.2 9.2 1.3 2 17 504 519 504 528 0.80 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF799-202 - 643 4.5e-29 99.9 152.1 15 18 0.00042 0.42 10.7 0.2 2 12 532 542 532 545 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF799-202 - 643 4.5e-29 99.9 152.1 16 18 0.0018 1.7 8.7 3.0 2 24 560 582 560 585 0.87 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF799-202 - 643 4.5e-29 99.9 152.1 17 18 2.7e-09 2.7e-06 27.2 5.3 2 27 588 613 588 613 0.97 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF799-202 - 643 4.5e-29 99.9 152.1 18 18 8.4e-07 0.00084 19.3 4.8 2 24 621 643 621 643 0.97 C2H2-type zinc finger KRAB PF01352.27 42 ZNF799-202 - 643 2.4e-19 68.7 0.0 1 1 3.9e-22 3.9e-19 68.0 0.0 1 42 3 44 3 44 0.97 KRAB box zf-C2H2_11 PF16622.5 29 ZNF799-202 - 643 9e-17 60.5 88.9 1 15 2.2e-06 0.0022 17.7 0.1 6 24 170 188 168 190 0.92 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF799-202 - 643 9e-17 60.5 88.9 2 15 0.36 3.6e+02 1.0 0.1 5 14 197 206 195 210 0.83 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF799-202 - 643 9e-17 60.5 88.9 3 15 1.9 1.9e+03 -1.3 0.5 7 23 227 243 224 245 0.74 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF799-202 - 643 9e-17 60.5 88.9 4 15 7.9e-06 0.0079 15.9 0.3 7 23 283 299 280 301 0.94 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF799-202 - 643 9e-17 60.5 88.9 5 15 0.00034 0.34 10.7 0.4 6 26 310 330 305 331 0.89 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF799-202 - 643 9e-17 60.5 88.9 6 15 0.07 70 3.3 0.3 5 23 337 355 334 358 0.90 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF799-202 - 643 9e-17 60.5 88.9 7 15 0.014 13 5.6 3.3 7 26 367 386 365 387 0.93 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF799-202 - 643 9e-17 60.5 88.9 8 15 0.6 6e+02 0.3 0.0 5 15 393 403 390 412 0.73 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF799-202 - 643 9e-17 60.5 88.9 9 15 1.7e-05 0.017 14.9 0.3 5 23 421 439 418 441 0.94 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF799-202 - 643 9e-17 60.5 88.9 10 15 0.016 16 5.3 1.8 6 25 477 496 474 498 0.92 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF799-202 - 643 9e-17 60.5 88.9 11 15 0.092 92 2.9 0.1 6 26 505 525 502 526 0.90 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF799-202 - 643 9e-17 60.5 88.9 12 15 0.1 1e+02 2.8 0.4 6 26 533 553 530 554 0.81 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF799-202 - 643 9e-17 60.5 88.9 13 15 0.029 29 4.5 0.3 6 18 561 573 558 579 0.79 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF799-202 - 643 9e-17 60.5 88.9 14 15 7.8e-06 0.0078 16.0 0.2 5 23 588 606 585 608 0.90 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF799-202 - 643 9e-17 60.5 88.9 15 15 1.4e-05 0.014 15.1 0.3 7 23 623 639 618 641 0.91 zinc-finger C2H2-type zf-C2H2_jaz PF12171.8 27 ZNF799-202 - 643 8.4e-15 54.6 107.1 1 18 1.1 1.1e+03 0.1 0.1 9 22 148 161 147 161 0.82 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF799-202 - 643 8.4e-15 54.6 107.1 2 18 0.00011 0.11 12.8 0.0 2 21 169 188 168 189 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF799-202 - 643 8.4e-15 54.6 107.1 3 18 0.015 15 6.0 0.2 2 23 197 218 196 219 0.85 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF799-202 - 643 8.4e-15 54.6 107.1 4 18 0.078 78 3.7 1.8 2 23 225 246 224 247 0.84 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF799-202 - 643 8.4e-15 54.6 107.1 5 18 0.21 2.1e+02 2.3 1.5 2 23 253 274 252 276 0.78 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF799-202 - 643 8.4e-15 54.6 107.1 6 18 0.0031 3.1 8.2 0.1 2 24 281 303 280 303 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF799-202 - 643 8.4e-15 54.6 107.1 7 18 0.021 21 5.6 0.3 2 21 309 328 308 329 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF799-202 - 643 8.4e-15 54.6 107.1 8 18 0.00035 0.35 11.2 0.7 2 24 337 359 336 359 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF799-202 - 643 8.4e-15 54.6 107.1 9 18 0.011 11 6.4 0.2 2 21 365 384 364 385 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF799-202 - 643 8.4e-15 54.6 107.1 10 18 0.00017 0.17 12.2 0.5 2 24 393 415 392 415 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF799-202 - 643 8.4e-15 54.6 107.1 11 18 0.04 39 4.7 0.2 2 24 421 443 420 443 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF799-202 - 643 8.4e-15 54.6 107.1 12 18 0.058 57 4.2 0.4 7 24 453 470 453 471 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF799-202 - 643 8.4e-15 54.6 107.1 13 18 0.22 2.2e+02 2.3 1.7 2 12 476 486 475 498 0.82 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF799-202 - 643 8.4e-15 54.6 107.1 14 18 0.055 55 4.2 0.6 2 21 504 523 503 524 0.83 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF799-202 - 643 8.4e-15 54.6 107.1 15 18 0.11 1.1e+02 3.3 0.2 2 12 532 542 531 542 0.88 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF799-202 - 643 8.4e-15 54.6 107.1 16 18 0.00019 0.19 12.1 0.6 2 24 560 582 559 582 0.95 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF799-202 - 643 8.4e-15 54.6 107.1 17 18 7.4e-05 0.074 13.4 1.8 2 24 588 610 587 613 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF799-202 - 643 8.4e-15 54.6 107.1 18 18 0.00062 0.61 10.4 0.4 4 24 623 643 620 643 0.95 Zinc-finger double-stranded RNA-binding Zn-ribbon_8 PF09723.10 40 ZNF799-202 - 643 1.2e-11 44.5 92.6 1 18 5.3 5.3e+03 -2.4 0.0 9 20 78 89 72 94 0.79 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF799-202 - 643 1.2e-11 44.5 92.6 2 18 0.0046 4.6 7.5 0.1 6 18 169 181 168 193 0.83 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF799-202 - 643 1.2e-11 44.5 92.6 3 18 0.0018 1.8 8.7 2.5 6 34 197 232 196 235 0.81 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF799-202 - 643 1.2e-11 44.5 92.6 4 18 0.21 2e+02 2.2 6.6 6 33 225 259 224 262 0.74 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF799-202 - 643 1.2e-11 44.5 92.6 5 18 0.046 45 4.3 6.2 6 34 253 288 252 291 0.79 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF799-202 - 643 1.2e-11 44.5 92.6 6 18 0.0003 0.3 11.3 3.3 6 34 281 316 280 316 0.78 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF799-202 - 643 1.2e-11 44.5 92.6 7 18 8.3e-05 0.083 13.0 1.0 6 34 309 344 308 347 0.78 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF799-202 - 643 1.2e-11 44.5 92.6 8 18 0.013 13 6.0 4.0 7 36 338 374 336 376 0.71 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF799-202 - 643 1.2e-11 44.5 92.6 9 18 0.00073 0.72 10.0 1.2 6 34 365 400 363 403 0.82 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF799-202 - 643 1.2e-11 44.5 92.6 10 18 0.0036 3.6 7.8 2.8 7 36 394 430 393 433 0.74 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF799-202 - 643 1.2e-11 44.5 92.6 11 18 0.073 73 3.6 3.8 6 22 421 437 419 457 0.64 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF799-202 - 643 1.2e-11 44.5 92.6 12 18 1.4 1.4e+03 -0.5 0.3 6 20 449 462 448 470 0.74 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF799-202 - 643 1.2e-11 44.5 92.6 13 18 0.038 38 4.5 8.8 6 34 476 511 475 513 0.73 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF799-202 - 643 1.2e-11 44.5 92.6 14 18 0.0018 1.8 8.7 5.5 6 34 504 539 502 542 0.85 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF799-202 - 643 1.2e-11 44.5 92.6 15 18 0.0011 1.1 9.5 7.4 6 35 532 568 530 574 0.80 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF799-202 - 643 1.2e-11 44.5 92.6 16 18 0.0026 2.6 8.3 0.7 6 18 560 572 559 583 0.79 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF799-202 - 643 1.2e-11 44.5 92.6 17 18 0.00061 0.61 10.2 0.1 6 25 588 607 587 618 0.86 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF799-202 - 643 1.2e-11 44.5 92.6 18 18 0.0046 4.6 7.4 0.1 6 24 621 639 619 643 0.82 Zinc ribbon domain # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF799-202.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF799-202.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF799-202.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF799-202.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF799-202.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:14:47 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZNF799-203 - 645 1.3e-115 373.2 166.8 1 18 1.9 1.9e+03 -0.4 0.2 11 21 129 139 128 141 0.82 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF799-203 - 645 1.3e-115 373.2 166.8 2 18 5.3e-11 5.2e-08 33.0 1.3 1 26 157 182 157 182 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF799-203 - 645 1.3e-115 373.2 166.8 3 18 1.4e-09 1.4e-06 28.4 0.1 1 24 185 208 185 209 0.98 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF799-203 - 645 1.3e-115 373.2 166.8 4 18 4.3e-10 4.3e-07 30.1 2.9 5 25 217 237 214 237 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF799-203 - 645 1.3e-115 373.2 166.8 5 18 5.3e-10 5.3e-07 29.8 1.6 2 24 242 264 241 265 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF799-203 - 645 1.3e-115 373.2 166.8 6 18 3e-10 3e-07 30.5 3.8 4 25 272 293 270 294 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF799-203 - 645 1.3e-115 373.2 166.8 7 18 9e-09 9e-06 25.9 3.1 1 26 297 322 297 322 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF799-203 - 645 1.3e-115 373.2 166.8 8 18 5.7e-07 0.00056 20.2 2.3 2 25 326 349 325 350 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF799-203 - 645 1.3e-115 373.2 166.8 9 18 1.6e-09 1.6e-06 28.2 1.7 1 23 353 375 353 378 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF799-203 - 645 1.3e-115 373.2 166.8 10 18 7.2e-10 7.2e-07 29.4 1.2 2 25 382 405 381 406 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF799-203 - 645 1.3e-115 373.2 166.8 11 18 1e-08 1e-05 25.7 3.8 2 24 410 432 410 433 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF799-203 - 645 1.3e-115 373.2 166.8 12 18 9.7e-08 9.7e-05 22.6 1.4 1 24 437 459 437 460 0.88 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF799-203 - 645 1.3e-115 373.2 166.8 13 18 3e-08 3e-05 24.2 3.4 2 25 465 488 464 489 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF799-203 - 645 1.3e-115 373.2 166.8 14 18 5.5e-11 5.5e-08 32.9 4.0 2 26 493 517 492 517 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF799-203 - 645 1.3e-115 373.2 166.8 15 18 4.8e-11 4.8e-08 33.1 0.5 1 25 520 544 520 544 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF799-203 - 645 1.3e-115 373.2 166.8 16 18 1.9e-09 1.9e-06 28.1 2.2 4 26 551 573 549 573 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF799-203 - 645 1.3e-115 373.2 166.8 17 18 5.1e-11 5e-08 33.0 0.3 2 26 577 601 577 601 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF799-203 - 645 1.3e-115 373.2 166.8 18 18 5.4e-07 0.00054 20.3 3.7 5 26 612 634 604 634 0.78 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZNF799-203 - 645 3.1e-60 197.4 164.2 1 18 0.043 43 4.8 1.4 7 23 149 165 136 165 0.88 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF799-203 - 645 3.1e-60 197.4 164.2 2 18 9.7e-09 9.7e-06 25.8 0.1 1 21 171 191 171 192 0.95 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF799-203 - 645 3.1e-60 197.4 164.2 3 18 4.2e-05 0.042 14.3 1.8 1 23 199 221 199 221 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF799-203 - 645 3.1e-60 197.4 164.2 4 18 6e-06 0.006 17.0 3.0 1 23 227 249 227 249 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF799-203 - 645 3.1e-60 197.4 164.2 5 18 0.00012 0.12 12.8 3.3 1 23 255 277 255 277 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF799-203 - 645 3.1e-60 197.4 164.2 6 18 1.3e-07 0.00013 22.2 1.2 1 23 283 305 283 305 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF799-203 - 645 3.1e-60 197.4 164.2 7 18 1.7e-05 0.017 15.6 2.8 1 23 311 333 311 333 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF799-203 - 645 3.1e-60 197.4 164.2 8 18 1.4e-05 0.014 15.8 4.0 1 23 339 361 339 361 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF799-203 - 645 3.1e-60 197.4 164.2 9 18 1.1e-06 0.0011 19.3 3.4 1 23 367 389 367 389 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF799-203 - 645 3.1e-60 197.4 164.2 10 18 1.3e-06 0.0013 19.1 1.9 1 23 395 417 395 417 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF799-203 - 645 3.1e-60 197.4 164.2 11 18 1.6e-06 0.0015 18.8 1.6 1 23 423 445 423 445 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF799-203 - 645 3.1e-60 197.4 164.2 12 18 0.0018 1.8 9.2 1.3 5 23 454 472 451 472 0.94 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF799-203 - 645 3.1e-60 197.4 164.2 13 18 0.00023 0.23 12.0 3.9 1 23 478 500 478 500 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF799-203 - 645 3.1e-60 197.4 164.2 14 18 4.7e-07 0.00047 20.5 1.8 1 23 506 528 506 528 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF799-203 - 645 3.1e-60 197.4 164.2 15 18 0.00027 0.27 11.8 1.4 1 23 534 556 534 556 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF799-203 - 645 3.1e-60 197.4 164.2 16 18 1.1e-05 0.011 16.2 2.0 1 23 562 584 562 584 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF799-203 - 645 3.1e-60 197.4 164.2 17 18 9.4e-08 9.4e-05 22.7 2.0 1 23 590 612 590 612 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF799-203 - 645 3.1e-60 197.4 164.2 18 18 1.1e-06 0.0011 19.3 1.9 3 23 625 645 623 645 0.97 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZNF799-203 - 645 2.1e-51 168.1 156.8 1 18 0.21 2.1e+02 3.2 0.4 7 23 149 165 149 166 0.89 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF799-203 - 645 2.1e-51 168.1 156.8 2 18 4.5e-07 0.00045 20.8 0.1 1 21 171 191 171 193 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF799-203 - 645 2.1e-51 168.1 156.8 3 18 0.00064 0.63 11.0 2.0 1 23 199 221 199 222 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF799-203 - 645 2.1e-51 168.1 156.8 4 18 9.2e-06 0.0092 16.8 2.5 1 23 227 249 227 250 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF799-203 - 645 2.1e-51 168.1 156.8 5 18 1.4e-05 0.013 16.2 3.0 1 23 255 277 255 278 0.97 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF799-203 - 645 2.1e-51 168.1 156.8 6 18 2e-06 0.002 18.8 0.9 1 23 283 305 283 306 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF799-203 - 645 2.1e-51 168.1 156.8 7 18 5.8e-05 0.057 14.3 2.5 1 23 311 333 311 334 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF799-203 - 645 2.1e-51 168.1 156.8 8 18 1.5e-06 0.0015 19.2 3.4 1 23 339 361 339 362 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF799-203 - 645 2.1e-51 168.1 156.8 9 18 5.3e-05 0.053 14.4 2.6 1 23 367 389 367 390 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF799-203 - 645 2.1e-51 168.1 156.8 10 18 1.2e-05 0.012 16.4 1.8 1 23 395 417 395 418 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF799-203 - 645 2.1e-51 168.1 156.8 11 18 1.1e-05 0.011 16.5 1.1 1 23 423 445 423 446 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF799-203 - 645 2.1e-51 168.1 156.8 12 18 0.0033 3.3 8.8 1.2 1 23 451 472 451 473 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF799-203 - 645 2.1e-51 168.1 156.8 13 18 7e-06 0.007 17.1 3.6 1 23 478 500 478 501 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF799-203 - 645 2.1e-51 168.1 156.8 14 18 0.0029 2.9 9.0 1.6 1 23 506 528 506 529 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF799-203 - 645 2.1e-51 168.1 156.8 15 18 0.0011 1.1 10.2 1.9 1 23 534 556 534 557 0.90 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF799-203 - 645 2.1e-51 168.1 156.8 16 18 4e-05 0.04 14.8 1.7 1 23 562 584 562 585 0.83 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF799-203 - 645 2.1e-51 168.1 156.8 17 18 7.8e-07 0.00077 20.1 2.0 1 23 590 612 590 613 0.97 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF799-203 - 645 2.1e-51 168.1 156.8 18 18 5e-06 0.005 17.6 1.7 2 23 624 645 623 645 0.95 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF799-203 - 645 4.8e-29 99.8 152.1 1 18 3.4 3.4e+03 -1.8 0.8 8 22 149 163 149 166 0.84 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF799-203 - 645 4.8e-29 99.8 152.1 2 18 1.7e-07 0.00017 21.5 0.4 2 22 171 191 171 192 0.95 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF799-203 - 645 4.8e-29 99.8 152.1 3 18 0.015 15 5.7 0.8 2 11 199 208 199 208 0.96 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF799-203 - 645 4.8e-29 99.8 152.1 4 18 0.0015 1.5 8.9 1.9 2 12 227 237 227 250 0.86 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF799-203 - 645 4.8e-29 99.8 152.1 5 18 0.00047 0.47 10.5 2.0 2 14 255 267 254 278 0.84 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF799-203 - 645 4.8e-29 99.8 152.1 6 18 5.9e-05 0.059 13.4 1.1 2 25 283 306 283 308 0.92 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF799-203 - 645 4.8e-29 99.8 152.1 7 18 0.005 5 7.2 0.3 2 12 311 321 311 330 0.89 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF799-203 - 645 4.8e-29 99.8 152.1 8 18 0.0068 6.8 6.8 3.0 2 24 339 361 339 364 0.78 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF799-203 - 645 4.8e-29 99.8 152.1 9 18 0.0053 5.2 7.2 0.4 2 11 367 376 366 389 0.84 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF799-203 - 645 4.8e-29 99.8 152.1 10 18 0.00082 0.82 9.7 0.8 2 13 395 406 395 419 0.88 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF799-203 - 645 4.8e-29 99.8 152.1 11 18 0.0015 1.5 9.0 1.4 2 24 423 445 423 448 0.90 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF799-203 - 645 4.8e-29 99.8 152.1 12 18 1.4 1.4e+03 -0.5 1.3 5 24 454 472 451 475 0.81 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF799-203 - 645 4.8e-29 99.8 152.1 13 18 1.2e-05 0.012 15.6 4.8 2 24 478 500 478 503 0.96 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF799-203 - 645 4.8e-29 99.8 152.1 14 18 0.0012 1.2 9.2 1.3 2 17 506 521 506 530 0.80 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF799-203 - 645 4.8e-29 99.8 152.1 15 18 0.00043 0.42 10.7 0.2 2 12 534 544 534 547 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF799-203 - 645 4.8e-29 99.8 152.1 16 18 0.0018 1.8 8.7 3.0 2 24 562 584 562 587 0.87 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF799-203 - 645 4.8e-29 99.8 152.1 17 18 2.7e-09 2.7e-06 27.2 5.3 2 27 590 615 590 615 0.97 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF799-203 - 645 4.8e-29 99.8 152.1 18 18 8.4e-07 0.00084 19.3 4.8 2 24 623 645 623 645 0.97 C2H2-type zinc finger KRAB PF01352.27 42 ZNF799-203 - 645 2.4e-19 68.7 0.0 1 1 3.9e-22 3.9e-19 68.0 0.0 1 42 5 46 5 46 0.97 KRAB box zf-C2H2_11 PF16622.5 29 ZNF799-203 - 645 9.5e-17 60.5 88.9 1 15 2.2e-06 0.0022 17.7 0.1 6 24 172 190 170 192 0.92 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF799-203 - 645 9.5e-17 60.5 88.9 2 15 0.36 3.6e+02 1.0 0.1 5 14 199 208 197 212 0.83 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF799-203 - 645 9.5e-17 60.5 88.9 3 15 1.9 1.9e+03 -1.3 0.5 7 23 229 245 226 247 0.74 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF799-203 - 645 9.5e-17 60.5 88.9 4 15 7.9e-06 0.0079 15.9 0.3 7 23 285 301 282 303 0.94 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF799-203 - 645 9.5e-17 60.5 88.9 5 15 0.00034 0.34 10.7 0.4 6 26 312 332 307 333 0.89 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF799-203 - 645 9.5e-17 60.5 88.9 6 15 0.07 70 3.3 0.3 5 23 339 357 336 360 0.90 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF799-203 - 645 9.5e-17 60.5 88.9 7 15 0.014 13 5.6 3.3 7 26 369 388 367 389 0.93 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF799-203 - 645 9.5e-17 60.5 88.9 8 15 0.6 6e+02 0.3 0.0 5 15 395 405 392 414 0.73 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF799-203 - 645 9.5e-17 60.5 88.9 9 15 1.7e-05 0.017 14.9 0.3 5 23 423 441 420 443 0.94 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF799-203 - 645 9.5e-17 60.5 88.9 10 15 0.016 16 5.3 1.8 6 25 479 498 476 500 0.92 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF799-203 - 645 9.5e-17 60.5 88.9 11 15 0.093 92 2.9 0.1 6 26 507 527 504 528 0.90 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF799-203 - 645 9.5e-17 60.5 88.9 12 15 0.1 1e+02 2.8 0.4 6 26 535 555 532 556 0.81 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF799-203 - 645 9.5e-17 60.5 88.9 13 15 0.029 29 4.5 0.3 6 18 563 575 560 581 0.79 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF799-203 - 645 9.5e-17 60.5 88.9 14 15 7.8e-06 0.0078 16.0 0.2 5 23 590 608 587 610 0.90 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF799-203 - 645 9.5e-17 60.5 88.9 15 15 1.4e-05 0.014 15.1 0.3 7 23 625 641 620 643 0.91 zinc-finger C2H2-type zf-C2H2_jaz PF12171.8 27 ZNF799-203 - 645 9e-15 54.5 107.1 1 18 1.1 1.1e+03 0.1 0.1 9 22 150 163 149 163 0.82 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF799-203 - 645 9e-15 54.5 107.1 2 18 0.00011 0.11 12.8 0.0 2 21 171 190 170 191 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF799-203 - 645 9e-15 54.5 107.1 3 18 0.015 15 6.0 0.2 2 23 199 220 198 221 0.85 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF799-203 - 645 9e-15 54.5 107.1 4 18 0.079 78 3.7 1.8 2 23 227 248 226 249 0.84 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF799-203 - 645 9e-15 54.5 107.1 5 18 0.21 2.1e+02 2.3 1.5 2 23 255 276 254 278 0.78 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF799-203 - 645 9e-15 54.5 107.1 6 18 0.0031 3.1 8.2 0.1 2 24 283 305 282 305 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF799-203 - 645 9e-15 54.5 107.1 7 18 0.021 21 5.6 0.3 2 21 311 330 310 331 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF799-203 - 645 9e-15 54.5 107.1 8 18 0.00036 0.35 11.2 0.7 2 24 339 361 338 361 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF799-203 - 645 9e-15 54.5 107.1 9 18 0.011 11 6.4 0.2 2 21 367 386 366 387 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF799-203 - 645 9e-15 54.5 107.1 10 18 0.00017 0.17 12.2 0.5 2 24 395 417 394 417 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF799-203 - 645 9e-15 54.5 107.1 11 18 0.04 40 4.7 0.2 2 24 423 445 422 445 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF799-203 - 645 9e-15 54.5 107.1 12 18 0.058 58 4.1 0.4 7 24 455 472 455 473 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF799-203 - 645 9e-15 54.5 107.1 13 18 0.22 2.2e+02 2.3 1.7 2 12 478 488 477 500 0.82 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF799-203 - 645 9e-15 54.5 107.1 14 18 0.055 55 4.2 0.6 2 21 506 525 505 526 0.83 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF799-203 - 645 9e-15 54.5 107.1 15 18 0.11 1.1e+02 3.3 0.2 2 12 534 544 533 544 0.88 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF799-203 - 645 9e-15 54.5 107.1 16 18 0.00019 0.19 12.1 0.6 2 24 562 584 561 584 0.95 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF799-203 - 645 9e-15 54.5 107.1 17 18 7.5e-05 0.074 13.4 1.8 2 24 590 612 589 615 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF799-203 - 645 9e-15 54.5 107.1 18 18 0.00062 0.62 10.4 0.4 4 24 625 645 622 645 0.95 Zinc-finger double-stranded RNA-binding Zn-ribbon_8 PF09723.10 40 ZNF799-203 - 645 5.3e-11 42.4 94.6 1 18 5.3 5.3e+03 -2.4 0.0 9 20 80 91 74 96 0.79 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF799-203 - 645 5.3e-11 42.4 94.6 2 18 0.0046 4.6 7.4 0.1 6 18 171 183 170 195 0.83 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF799-203 - 645 5.3e-11 42.4 94.6 3 18 0.0018 1.8 8.8 2.4 6 34 199 234 198 237 0.81 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF799-203 - 645 5.3e-11 42.4 94.6 4 18 0.21 2.1e+02 2.2 6.6 6 33 227 261 226 264 0.74 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF799-203 - 645 5.3e-11 42.4 94.6 5 18 0.045 45 4.3 6.2 6 34 255 290 254 293 0.79 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF799-203 - 645 5.3e-11 42.4 94.6 6 18 0.0003 0.3 11.2 3.3 6 34 283 318 282 318 0.78 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF799-203 - 645 5.3e-11 42.4 94.6 7 18 8.4e-05 0.084 13.0 1.0 6 34 311 346 310 349 0.78 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF799-203 - 645 5.3e-11 42.4 94.6 8 18 0.013 13 6.0 4.0 7 36 340 376 338 378 0.71 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF799-203 - 645 5.3e-11 42.4 94.6 9 18 0.00073 0.73 10.0 1.2 6 34 367 402 365 405 0.82 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF799-203 - 645 5.3e-11 42.4 94.6 10 18 0.0036 3.6 7.8 2.8 7 36 396 432 395 435 0.74 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF799-203 - 645 5.3e-11 42.4 94.6 11 18 0.071 71 3.6 3.7 6 22 423 439 421 459 0.64 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF799-203 - 645 5.3e-11 42.4 94.6 12 18 1.4 1.4e+03 -0.5 0.3 6 20 451 464 450 472 0.74 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF799-203 - 645 5.3e-11 42.4 94.6 13 18 0.038 38 4.5 8.8 6 34 478 513 477 515 0.73 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF799-203 - 645 5.3e-11 42.4 94.6 14 18 0.0018 1.8 8.7 5.5 6 34 506 541 504 544 0.85 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF799-203 - 645 5.3e-11 42.4 94.6 15 18 0.0011 1.1 9.5 7.4 6 35 534 570 532 576 0.80 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF799-203 - 645 5.3e-11 42.4 94.6 16 18 0.0026 2.6 8.3 0.7 6 18 562 574 561 585 0.79 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF799-203 - 645 5.3e-11 42.4 94.6 17 18 0.00032 0.32 11.1 3.0 6 33 590 629 589 630 0.71 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF799-203 - 645 5.3e-11 42.4 94.6 18 18 0.0048 4.8 7.4 0.1 6 24 623 641 622 645 0.82 Zinc ribbon domain # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF799-203.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF799-203.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF799-203.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF799-203.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF799-203.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:14:47 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF799-204.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF799-204.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF799-204.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF799-204.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF799-204.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:14:48 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-C2H2_assoc2 PF16624.5 97 ZNF800-201 - 664 7.6e-38 129.4 16.0 1 3 3 3.4e+03 -0.9 1.3 30 57 155 184 135 224 0.61 Unstructured region upstream of a zinc-finger zf-C2H2_assoc2 PF16624.5 97 ZNF800-201 - 664 7.6e-38 129.4 16.0 2 3 8.1 9e+03 -2.2 1.1 58 81 338 360 333 370 0.59 Unstructured region upstream of a zinc-finger zf-C2H2_assoc2 PF16624.5 97 ZNF800-201 - 664 7.6e-38 129.4 16.0 3 3 6.7e-41 7.6e-38 129.4 16.0 1 97 391 485 391 485 0.99 Unstructured region upstream of a zinc-finger zf-C2H2_4 PF13894.6 24 ZNF800-201 - 664 2.8e-16 58.8 55.8 1 7 0.027 30 5.8 0.5 1 21 69 89 69 91 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF800-201 - 664 2.8e-16 58.8 55.8 2 7 3.6e-06 0.004 17.9 2.0 2 24 231 253 230 253 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF800-201 - 664 2.8e-16 58.8 55.8 3 7 1.2e-05 0.013 16.2 1.8 2 24 288 310 287 310 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF800-201 - 664 2.8e-16 58.8 55.8 4 7 0.0002 0.22 12.5 3.0 2 24 360 382 359 382 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF800-201 - 664 2.8e-16 58.8 55.8 5 7 8.3e-06 0.0093 16.7 1.3 2 23 487 508 486 509 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF800-201 - 664 2.8e-16 58.8 55.8 6 7 0.00093 1 10.4 0.3 1 24 519 542 519 542 0.77 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF800-201 - 664 2.8e-16 58.8 55.8 7 7 0.00046 0.52 11.3 5.0 1 23 618 640 618 641 0.94 C2H2-type zinc finger zf-C2H2 PF00096.26 23 ZNF800-201 - 664 3.3e-15 55.6 58.3 1 7 0.26 2.9e+02 2.2 0.4 1 20 69 88 69 90 0.91 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF800-201 - 664 3.3e-15 55.6 58.3 2 7 0.00029 0.33 11.5 2.6 3 23 232 253 230 253 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF800-201 - 664 3.3e-15 55.6 58.3 3 7 0.0015 1.7 9.3 1.5 3 23 289 310 288 310 0.88 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF800-201 - 664 3.3e-15 55.6 58.3 4 7 1.3e-05 0.014 15.8 3.2 2 23 360 382 359 382 0.94 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF800-201 - 664 3.3e-15 55.6 58.3 5 7 2e-06 0.0023 18.3 1.6 2 23 487 508 486 508 0.95 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF800-201 - 664 3.3e-15 55.6 58.3 6 7 4.4e-05 0.049 14.1 0.5 1 23 519 542 519 542 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF800-201 - 664 3.3e-15 55.6 58.3 7 7 6.7e-06 0.0075 16.7 5.9 1 23 618 640 618 640 0.98 Zinc finger, C2H2 type zf-C2H2_11 PF16622.5 29 ZNF800-201 - 664 3.9e-14 52.1 11.8 1 7 2.7 3e+03 -1.9 0.4 9 13 70 74 69 76 0.84 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF800-201 - 664 3.9e-14 52.1 11.8 2 7 0.0086 9.7 6.1 4.5 7 29 232 254 229 254 0.98 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF800-201 - 664 3.9e-14 52.1 11.8 3 7 2.1 2.4e+03 -1.6 0.8 7 28 289 310 286 311 0.80 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF800-201 - 664 3.9e-14 52.1 11.8 4 7 4.5e-17 5e-14 51.7 5.3 1 29 355 383 355 383 0.97 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF800-201 - 664 3.9e-14 52.1 11.8 5 7 6.1e-05 0.069 12.9 0.5 7 24 488 505 486 507 0.94 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF800-201 - 664 3.9e-14 52.1 11.8 6 7 0.95 1.1e+03 -0.5 2.0 22 29 536 543 535 543 0.96 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF800-201 - 664 3.9e-14 52.1 11.8 7 7 0.011 12 5.7 1.5 4 23 617 636 614 641 0.84 zinc-finger C2H2-type zf-met PF12874.7 25 ZNF800-201 - 664 8.8e-09 35.5 27.4 1 6 0.041 46 4.6 0.0 1 19 69 87 69 89 0.87 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF800-201 - 664 8.8e-09 35.5 27.4 2 6 0.0083 9.3 6.8 0.2 2 20 231 249 230 250 0.84 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF800-201 - 664 8.8e-09 35.5 27.4 3 6 0.0005 0.56 10.7 0.5 2 20 288 306 287 307 0.93 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF800-201 - 664 8.8e-09 35.5 27.4 4 6 0.0002 0.22 11.9 0.4 3 21 361 379 360 380 0.95 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF800-201 - 664 8.8e-09 35.5 27.4 5 6 2.3e-06 0.0026 18.1 0.6 1 20 486 505 486 506 0.92 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF800-201 - 664 8.8e-09 35.5 27.4 6 6 5.6 6.3e+03 -2.2 1.0 1 6 519 524 518 526 0.87 Zinc-finger of C2H2 type # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF800-201.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF800-201.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF800-201.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF800-201.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF800-201.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:14:48 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-C2H2_assoc2 PF16624.5 97 ZNF800-202 - 664 7.6e-38 129.4 16.0 1 3 3 3.4e+03 -0.9 1.3 30 57 155 184 135 224 0.61 Unstructured region upstream of a zinc-finger zf-C2H2_assoc2 PF16624.5 97 ZNF800-202 - 664 7.6e-38 129.4 16.0 2 3 8.1 9e+03 -2.2 1.1 58 81 338 360 333 370 0.59 Unstructured region upstream of a zinc-finger zf-C2H2_assoc2 PF16624.5 97 ZNF800-202 - 664 7.6e-38 129.4 16.0 3 3 6.7e-41 7.6e-38 129.4 16.0 1 97 391 485 391 485 0.99 Unstructured region upstream of a zinc-finger zf-C2H2_4 PF13894.6 24 ZNF800-202 - 664 2.8e-16 58.8 55.8 1 7 0.027 30 5.8 0.5 1 21 69 89 69 91 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF800-202 - 664 2.8e-16 58.8 55.8 2 7 3.6e-06 0.004 17.9 2.0 2 24 231 253 230 253 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF800-202 - 664 2.8e-16 58.8 55.8 3 7 1.2e-05 0.013 16.2 1.8 2 24 288 310 287 310 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF800-202 - 664 2.8e-16 58.8 55.8 4 7 0.0002 0.22 12.5 3.0 2 24 360 382 359 382 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF800-202 - 664 2.8e-16 58.8 55.8 5 7 8.3e-06 0.0093 16.7 1.3 2 23 487 508 486 509 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF800-202 - 664 2.8e-16 58.8 55.8 6 7 0.00093 1 10.4 0.3 1 24 519 542 519 542 0.77 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF800-202 - 664 2.8e-16 58.8 55.8 7 7 0.00046 0.52 11.3 5.0 1 23 618 640 618 641 0.94 C2H2-type zinc finger zf-C2H2 PF00096.26 23 ZNF800-202 - 664 3.3e-15 55.6 58.3 1 7 0.26 2.9e+02 2.2 0.4 1 20 69 88 69 90 0.91 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF800-202 - 664 3.3e-15 55.6 58.3 2 7 0.00029 0.33 11.5 2.6 3 23 232 253 230 253 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF800-202 - 664 3.3e-15 55.6 58.3 3 7 0.0015 1.7 9.3 1.5 3 23 289 310 288 310 0.88 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF800-202 - 664 3.3e-15 55.6 58.3 4 7 1.3e-05 0.014 15.8 3.2 2 23 360 382 359 382 0.94 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF800-202 - 664 3.3e-15 55.6 58.3 5 7 2e-06 0.0023 18.3 1.6 2 23 487 508 486 508 0.95 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF800-202 - 664 3.3e-15 55.6 58.3 6 7 4.4e-05 0.049 14.1 0.5 1 23 519 542 519 542 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF800-202 - 664 3.3e-15 55.6 58.3 7 7 6.7e-06 0.0075 16.7 5.9 1 23 618 640 618 640 0.98 Zinc finger, C2H2 type zf-C2H2_11 PF16622.5 29 ZNF800-202 - 664 3.9e-14 52.1 11.8 1 7 2.7 3e+03 -1.9 0.4 9 13 70 74 69 76 0.84 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF800-202 - 664 3.9e-14 52.1 11.8 2 7 0.0086 9.7 6.1 4.5 7 29 232 254 229 254 0.98 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF800-202 - 664 3.9e-14 52.1 11.8 3 7 2.1 2.4e+03 -1.6 0.8 7 28 289 310 286 311 0.80 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF800-202 - 664 3.9e-14 52.1 11.8 4 7 4.5e-17 5e-14 51.7 5.3 1 29 355 383 355 383 0.97 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF800-202 - 664 3.9e-14 52.1 11.8 5 7 6.1e-05 0.069 12.9 0.5 7 24 488 505 486 507 0.94 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF800-202 - 664 3.9e-14 52.1 11.8 6 7 0.95 1.1e+03 -0.5 2.0 22 29 536 543 535 543 0.96 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF800-202 - 664 3.9e-14 52.1 11.8 7 7 0.011 12 5.7 1.5 4 23 617 636 614 641 0.84 zinc-finger C2H2-type zf-met PF12874.7 25 ZNF800-202 - 664 8.8e-09 35.5 27.4 1 6 0.041 46 4.6 0.0 1 19 69 87 69 89 0.87 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF800-202 - 664 8.8e-09 35.5 27.4 2 6 0.0083 9.3 6.8 0.2 2 20 231 249 230 250 0.84 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF800-202 - 664 8.8e-09 35.5 27.4 3 6 0.0005 0.56 10.7 0.5 2 20 288 306 287 307 0.93 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF800-202 - 664 8.8e-09 35.5 27.4 4 6 0.0002 0.22 11.9 0.4 3 21 361 379 360 380 0.95 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF800-202 - 664 8.8e-09 35.5 27.4 5 6 2.3e-06 0.0026 18.1 0.6 1 20 486 505 486 506 0.92 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF800-202 - 664 8.8e-09 35.5 27.4 6 6 5.6 6.3e+03 -2.2 1.0 1 6 519 524 518 526 0.87 Zinc-finger of C2H2 type # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF800-202.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF800-202.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF800-202.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF800-202.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF800-202.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:14:49 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-C2H2_assoc2 PF16624.5 97 ZNF800-203 - 664 7.6e-38 129.4 16.0 1 3 3 3.4e+03 -0.9 1.3 30 57 155 184 135 224 0.61 Unstructured region upstream of a zinc-finger zf-C2H2_assoc2 PF16624.5 97 ZNF800-203 - 664 7.6e-38 129.4 16.0 2 3 8.1 9e+03 -2.2 1.1 58 81 338 360 333 370 0.59 Unstructured region upstream of a zinc-finger zf-C2H2_assoc2 PF16624.5 97 ZNF800-203 - 664 7.6e-38 129.4 16.0 3 3 6.7e-41 7.6e-38 129.4 16.0 1 97 391 485 391 485 0.99 Unstructured region upstream of a zinc-finger zf-C2H2_4 PF13894.6 24 ZNF800-203 - 664 2.8e-16 58.8 55.8 1 7 0.027 30 5.8 0.5 1 21 69 89 69 91 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF800-203 - 664 2.8e-16 58.8 55.8 2 7 3.6e-06 0.004 17.9 2.0 2 24 231 253 230 253 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF800-203 - 664 2.8e-16 58.8 55.8 3 7 1.2e-05 0.013 16.2 1.8 2 24 288 310 287 310 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF800-203 - 664 2.8e-16 58.8 55.8 4 7 0.0002 0.22 12.5 3.0 2 24 360 382 359 382 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF800-203 - 664 2.8e-16 58.8 55.8 5 7 8.3e-06 0.0093 16.7 1.3 2 23 487 508 486 509 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF800-203 - 664 2.8e-16 58.8 55.8 6 7 0.00093 1 10.4 0.3 1 24 519 542 519 542 0.77 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF800-203 - 664 2.8e-16 58.8 55.8 7 7 0.00046 0.52 11.3 5.0 1 23 618 640 618 641 0.94 C2H2-type zinc finger zf-C2H2 PF00096.26 23 ZNF800-203 - 664 3.3e-15 55.6 58.3 1 7 0.26 2.9e+02 2.2 0.4 1 20 69 88 69 90 0.91 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF800-203 - 664 3.3e-15 55.6 58.3 2 7 0.00029 0.33 11.5 2.6 3 23 232 253 230 253 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF800-203 - 664 3.3e-15 55.6 58.3 3 7 0.0015 1.7 9.3 1.5 3 23 289 310 288 310 0.88 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF800-203 - 664 3.3e-15 55.6 58.3 4 7 1.3e-05 0.014 15.8 3.2 2 23 360 382 359 382 0.94 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF800-203 - 664 3.3e-15 55.6 58.3 5 7 2e-06 0.0023 18.3 1.6 2 23 487 508 486 508 0.95 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF800-203 - 664 3.3e-15 55.6 58.3 6 7 4.4e-05 0.049 14.1 0.5 1 23 519 542 519 542 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF800-203 - 664 3.3e-15 55.6 58.3 7 7 6.7e-06 0.0075 16.7 5.9 1 23 618 640 618 640 0.98 Zinc finger, C2H2 type zf-C2H2_11 PF16622.5 29 ZNF800-203 - 664 3.9e-14 52.1 11.8 1 7 2.7 3e+03 -1.9 0.4 9 13 70 74 69 76 0.84 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF800-203 - 664 3.9e-14 52.1 11.8 2 7 0.0086 9.7 6.1 4.5 7 29 232 254 229 254 0.98 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF800-203 - 664 3.9e-14 52.1 11.8 3 7 2.1 2.4e+03 -1.6 0.8 7 28 289 310 286 311 0.80 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF800-203 - 664 3.9e-14 52.1 11.8 4 7 4.5e-17 5e-14 51.7 5.3 1 29 355 383 355 383 0.97 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF800-203 - 664 3.9e-14 52.1 11.8 5 7 6.1e-05 0.069 12.9 0.5 7 24 488 505 486 507 0.94 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF800-203 - 664 3.9e-14 52.1 11.8 6 7 0.95 1.1e+03 -0.5 2.0 22 29 536 543 535 543 0.96 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF800-203 - 664 3.9e-14 52.1 11.8 7 7 0.011 12 5.7 1.5 4 23 617 636 614 641 0.84 zinc-finger C2H2-type zf-met PF12874.7 25 ZNF800-203 - 664 8.8e-09 35.5 27.4 1 6 0.041 46 4.6 0.0 1 19 69 87 69 89 0.87 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF800-203 - 664 8.8e-09 35.5 27.4 2 6 0.0083 9.3 6.8 0.2 2 20 231 249 230 250 0.84 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF800-203 - 664 8.8e-09 35.5 27.4 3 6 0.0005 0.56 10.7 0.5 2 20 288 306 287 307 0.93 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF800-203 - 664 8.8e-09 35.5 27.4 4 6 0.0002 0.22 11.9 0.4 3 21 361 379 360 380 0.95 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF800-203 - 664 8.8e-09 35.5 27.4 5 6 2.3e-06 0.0026 18.1 0.6 1 20 486 505 486 506 0.92 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF800-203 - 664 8.8e-09 35.5 27.4 6 6 5.6 6.3e+03 -2.2 1.0 1 6 519 524 518 526 0.87 Zinc-finger of C2H2 type # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF800-203.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF800-203.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF800-203.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF800-203.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF800-203.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:14:49 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF800-204.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF800-204.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF800-204.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF800-204.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF800-204.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:14:49 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF800-205.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF800-205.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF800-205.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF800-205.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF800-205.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:14:50 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF800-206.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF800-206.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF800-206.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF800-206.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF800-206.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:14:50 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF800-207.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF800-207.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF800-207.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF800-207.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF800-207.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:14:50 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-C2H2_4 PF13894.6 24 ZNF800-208 - 336 2.2e-08 34.2 17.5 1 3 0.01 13 6.9 0.5 1 21 69 89 69 91 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF800-208 - 336 2.2e-08 34.2 17.5 2 3 1.4e-06 0.0017 19.0 2.0 2 24 231 253 230 253 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF800-208 - 336 2.2e-08 34.2 17.5 3 3 4.6e-06 0.0058 17.4 1.8 2 24 288 310 287 310 0.94 C2H2-type zinc finger # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF800-208.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF800-208.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF800-208.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF800-208.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF800-208.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:14:51 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZNF805-201 - 494 5.6e-108 349.0 89.8 1 14 0.002 1.3 9.5 0.2 12 25 67 80 58 81 0.89 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF805-201 - 494 5.6e-108 349.0 89.8 2 14 2.3e-10 1.6e-07 31.4 0.6 2 25 85 108 85 109 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF805-201 - 494 5.6e-108 349.0 89.8 3 14 1.5e-09 1e-06 28.9 1.3 2 25 113 136 112 137 0.89 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF805-201 - 494 5.6e-108 349.0 89.8 4 14 2.5e-11 1.7e-08 34.5 3.0 1 26 140 165 140 165 0.97 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF805-201 - 494 5.6e-108 349.0 89.8 5 14 1.9e-09 1.3e-06 28.5 1.0 4 24 171 191 169 192 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF805-201 - 494 5.6e-108 349.0 89.8 6 14 4.7e-09 3.3e-06 27.3 1.0 3 26 198 221 196 221 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF805-201 - 494 5.6e-108 349.0 89.8 7 14 2.4e-11 1.7e-08 34.5 0.3 2 24 225 247 224 247 0.97 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF805-201 - 494 5.6e-108 349.0 89.8 8 14 8.1e-09 5.6e-06 26.6 1.1 4 26 255 277 252 277 0.87 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF805-201 - 494 5.6e-108 349.0 89.8 9 14 1.2e-12 8e-10 38.7 1.9 2 26 281 305 280 305 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF805-201 - 494 5.6e-108 349.0 89.8 10 14 9e-10 6.2e-07 29.6 1.2 5 26 312 333 309 333 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF805-201 - 494 5.6e-108 349.0 89.8 11 14 4.5e-12 3.1e-09 36.8 0.2 1 25 336 360 336 361 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF805-201 - 494 5.6e-108 349.0 89.8 12 14 1.5e-11 1.1e-08 35.2 0.2 1 24 364 387 364 387 0.97 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF805-201 - 494 5.6e-108 349.0 89.8 13 14 3.9e-12 2.7e-09 37.0 0.1 1 25 392 416 392 417 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF805-201 - 494 5.6e-108 349.0 89.8 14 14 0.0051 3.5 8.2 0.1 1 14 420 433 420 437 0.89 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZNF805-201 - 494 1.4e-66 217.4 102.7 1 13 2.4e-07 0.00017 21.9 0.8 1 23 70 92 70 92 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF805-201 - 494 1.4e-66 217.4 102.7 2 13 2e-06 0.0014 19.0 2.6 1 23 98 120 98 120 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF805-201 - 494 1.4e-66 217.4 102.7 3 13 2.1e-09 1.5e-06 28.4 2.8 1 23 126 148 126 148 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF805-201 - 494 1.4e-66 217.4 102.7 4 13 1.5e-06 0.001 19.4 3.3 1 23 154 176 154 176 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF805-201 - 494 1.4e-66 217.4 102.7 5 13 1.8e-06 0.0012 19.2 0.2 1 23 182 204 182 204 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF805-201 - 494 1.4e-66 217.4 102.7 6 13 4e-08 2.7e-05 24.3 2.7 1 23 210 232 210 232 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF805-201 - 494 1.4e-66 217.4 102.7 7 13 1.3e-05 0.009 16.4 0.7 1 23 238 260 238 260 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF805-201 - 494 1.4e-66 217.4 102.7 8 13 2.8e-08 2e-05 24.8 2.3 1 23 266 288 266 288 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF805-201 - 494 1.4e-66 217.4 102.7 9 13 5.8e-06 0.004 17.5 3.6 1 23 294 316 294 316 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF805-201 - 494 1.4e-66 217.4 102.7 10 13 1.1e-07 7.3e-05 23.0 0.2 1 23 322 344 322 344 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF805-201 - 494 1.4e-66 217.4 102.7 11 13 3.4e-09 2.3e-06 27.7 0.5 1 23 350 372 350 372 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF805-201 - 494 1.4e-66 217.4 102.7 12 13 0.0016 1.1 9.8 0.6 1 23 378 400 378 400 0.92 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF805-201 - 494 1.4e-66 217.4 102.7 13 13 1e-09 7e-07 29.4 0.9 1 23 406 428 406 428 0.99 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZNF805-201 - 494 1.1e-33 112.9 98.7 1 13 2.8e-05 0.019 15.8 0.9 1 23 70 92 70 93 0.87 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF805-201 - 494 1.1e-33 112.9 98.7 2 13 1.2e-05 0.008 16.9 1.7 1 20 98 118 98 121 0.73 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF805-201 - 494 1.1e-33 112.9 98.7 3 13 3e-05 0.021 15.7 2.1 1 23 126 148 126 149 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF805-201 - 494 1.1e-33 112.9 98.7 4 13 0.015 10 7.3 1.7 1 19 154 172 154 176 0.78 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF805-201 - 494 1.1e-33 112.9 98.7 5 13 6.6e-05 0.045 14.6 0.2 1 23 182 204 182 205 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF805-201 - 494 1.1e-33 112.9 98.7 6 13 0.072 50 5.1 2.4 1 23 210 232 210 233 0.78 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF805-201 - 494 1.1e-33 112.9 98.7 7 13 9.4e-05 0.065 14.1 1.1 1 23 238 260 238 261 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF805-201 - 494 1.1e-33 112.9 98.7 8 13 0.00032 0.22 12.4 1.8 1 23 266 288 266 289 0.90 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF805-201 - 494 1.1e-33 112.9 98.7 9 13 0.0026 1.8 9.6 3.5 1 23 294 316 294 317 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF805-201 - 494 1.1e-33 112.9 98.7 10 13 4.4e-06 0.0031 18.2 0.3 1 23 322 344 322 345 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF805-201 - 494 1.1e-33 112.9 98.7 11 13 2.1e-05 0.015 16.1 0.3 1 23 350 372 350 373 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF805-201 - 494 1.1e-33 112.9 98.7 12 13 0.00082 0.57 11.2 0.7 1 23 378 400 378 401 0.90 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF805-201 - 494 1.1e-33 112.9 98.7 13 13 2.8e-06 0.0019 18.8 0.9 1 23 406 428 406 429 0.96 C2H2-type zinc finger zf-C2H2_jaz PF12171.8 27 ZNF805-201 - 494 5.2e-17 61.7 61.9 1 13 0.0008 0.55 10.6 0.7 2 22 70 90 69 90 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF805-201 - 494 5.2e-17 61.7 61.9 2 13 0.00052 0.36 11.2 0.1 2 20 98 116 97 116 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF805-201 - 494 5.2e-17 61.7 61.9 3 13 0.002 1.4 9.3 0.4 2 22 126 146 125 146 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF805-201 - 494 5.2e-17 61.7 61.9 4 13 0.0036 2.5 8.5 0.6 2 24 154 176 153 176 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF805-201 - 494 5.2e-17 61.7 61.9 5 13 0.11 73 3.8 0.1 2 13 182 193 181 201 0.86 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF805-201 - 494 5.2e-17 61.7 61.9 6 13 0.023 16 6.0 1.0 2 18 210 226 209 232 0.79 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF805-201 - 494 5.2e-17 61.7 61.9 7 13 1.2 8.1e+02 0.5 0.8 2 11 238 247 237 257 0.83 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF805-201 - 494 5.2e-17 61.7 61.9 8 13 0.00049 0.34 11.3 0.3 2 22 266 286 265 286 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF805-201 - 494 5.2e-17 61.7 61.9 9 13 1.3 9.3e+02 0.3 0.8 2 20 294 312 293 314 0.74 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF805-201 - 494 5.2e-17 61.7 61.9 10 13 9.6e-05 0.066 13.5 0.1 2 22 322 342 321 342 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF805-201 - 494 5.2e-17 61.7 61.9 11 13 0.012 8.2 6.8 0.0 2 22 350 370 349 370 0.91 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF805-201 - 494 5.2e-17 61.7 61.9 12 13 0.04 28 5.2 0.2 2 11 378 387 377 387 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF805-201 - 494 5.2e-17 61.7 61.9 13 13 0.0002 0.14 12.5 0.0 2 22 406 426 405 426 0.94 Zinc-finger double-stranded RNA-binding XPA_N PF01286.18 32 ZNF805-201 - 494 1.9e-15 56.6 62.8 1 13 0.079 54 3.9 0.2 3 16 71 84 70 88 0.82 XPA protein N-terminal XPA_N PF01286.18 32 ZNF805-201 - 494 1.9e-15 56.6 62.8 2 13 0.00034 0.23 11.5 0.2 3 17 99 113 97 118 0.82 XPA protein N-terminal XPA_N PF01286.18 32 ZNF805-201 - 494 1.9e-15 56.6 62.8 3 13 0.0065 4.5 7.4 0.1 3 12 127 136 125 144 0.86 XPA protein N-terminal XPA_N PF01286.18 32 ZNF805-201 - 494 1.9e-15 56.6 62.8 4 13 0.018 12 6.0 0.2 3 12 155 164 153 165 0.89 XPA protein N-terminal XPA_N PF01286.18 32 ZNF805-201 - 494 1.9e-15 56.6 62.8 5 13 0.0094 6.5 6.9 0.3 3 13 183 193 181 193 0.90 XPA protein N-terminal XPA_N PF01286.18 32 ZNF805-201 - 494 1.9e-15 56.6 62.8 6 13 0.0024 1.6 8.8 0.1 3 17 211 226 209 228 0.82 XPA protein N-terminal XPA_N PF01286.18 32 ZNF805-201 - 494 1.9e-15 56.6 62.8 7 13 0.0023 1.6 8.8 0.6 3 14 239 250 237 255 0.92 XPA protein N-terminal XPA_N PF01286.18 32 ZNF805-201 - 494 1.9e-15 56.6 62.8 8 13 0.0023 1.6 8.8 0.1 3 16 267 281 265 284 0.78 XPA protein N-terminal XPA_N PF01286.18 32 ZNF805-201 - 494 1.9e-15 56.6 62.8 9 13 0.038 27 4.9 0.6 3 12 295 304 293 306 0.88 XPA protein N-terminal XPA_N PF01286.18 32 ZNF805-201 - 494 1.9e-15 56.6 62.8 10 13 0.009 6.2 7.0 0.2 3 12 323 332 321 342 0.88 XPA protein N-terminal XPA_N PF01286.18 32 ZNF805-201 - 494 1.9e-15 56.6 62.8 11 13 0.011 7.9 6.6 0.2 3 11 351 359 349 361 0.88 XPA protein N-terminal XPA_N PF01286.18 32 ZNF805-201 - 494 1.9e-15 56.6 62.8 12 13 0.0049 3.4 7.8 0.6 3 14 379 390 377 391 0.88 XPA protein N-terminal XPA_N PF01286.18 32 ZNF805-201 - 494 1.9e-15 56.6 62.8 13 13 0.0065 4.5 7.4 0.3 3 14 407 418 405 422 0.90 XPA protein N-terminal zf-C2H2_6 PF13912.6 27 ZNF805-201 - 494 3.8e-15 55.4 95.8 1 13 0.0014 0.97 9.5 1.4 2 12 70 80 69 81 0.91 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF805-201 - 494 3.8e-15 55.4 95.8 2 13 0.00017 0.12 12.4 1.0 2 12 98 108 98 113 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF805-201 - 494 3.8e-15 55.4 95.8 3 13 0.011 7.4 6.7 1.1 2 13 126 137 126 150 0.78 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF805-201 - 494 3.8e-15 55.4 95.8 4 13 0.0021 1.4 9.0 0.9 2 11 154 163 154 164 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF805-201 - 494 3.8e-15 55.4 95.8 5 13 0.0042 2.9 8.0 0.9 2 12 182 192 182 192 0.92 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF805-201 - 494 3.8e-15 55.4 95.8 6 13 0.0054 3.7 7.6 2.4 2 24 210 232 210 235 0.85 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF805-201 - 494 3.8e-15 55.4 95.8 7 13 0.0027 1.9 8.6 1.4 2 11 238 247 238 256 0.91 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF805-201 - 494 3.8e-15 55.4 95.8 8 13 0.043 30 4.8 0.8 2 12 266 276 266 277 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF805-201 - 494 3.8e-15 55.4 95.8 9 13 0.012 8.5 6.5 2.6 2 12 294 304 294 317 0.90 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF805-201 - 494 3.8e-15 55.4 95.8 10 13 0.00056 0.39 10.8 0.2 2 12 322 332 322 340 0.91 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF805-201 - 494 3.8e-15 55.4 95.8 11 13 0.0018 1.2 9.2 0.3 2 24 350 372 350 375 0.82 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF805-201 - 494 3.8e-15 55.4 95.8 12 13 0.0097 6.7 6.8 0.5 2 12 378 388 378 401 0.77 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF805-201 - 494 3.8e-15 55.4 95.8 13 13 3.3e-05 0.022 14.7 1.6 2 24 406 428 406 430 0.92 C2H2-type zinc finger Zn-ribbon_8 PF09723.10 40 ZNF805-201 - 494 9.4e-13 48.1 71.3 1 12 0.021 15 5.8 0.2 6 18 70 82 69 92 0.81 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF805-201 - 494 9.4e-13 48.1 71.3 2 12 4.1e-05 0.028 14.5 3.8 6 38 98 137 97 139 0.81 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF805-201 - 494 9.4e-13 48.1 71.3 3 12 0.00011 0.073 13.2 3.5 6 34 126 161 125 162 0.92 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF805-201 - 494 9.4e-13 48.1 71.3 4 12 9.5e-06 0.0065 16.6 2.2 6 36 154 191 153 194 0.89 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF805-201 - 494 9.4e-13 48.1 71.3 5 12 0.032 22 5.2 8.3 6 34 210 245 209 249 0.80 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF805-201 - 494 9.4e-13 48.1 71.3 6 12 0.065 45 4.3 1.6 6 15 238 247 237 253 0.89 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF805-201 - 494 9.4e-13 48.1 71.3 7 12 5.3e-05 0.036 14.2 2.4 6 35 266 302 265 305 0.91 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF805-201 - 494 9.4e-13 48.1 71.3 8 12 0.00066 0.45 10.7 5.6 6 35 294 330 293 334 0.88 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF805-201 - 494 9.4e-13 48.1 71.3 9 12 0.00027 0.19 11.9 4.4 6 38 322 361 321 363 0.83 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF805-201 - 494 9.4e-13 48.1 71.3 10 12 0.001 0.7 10.1 5.2 6 34 350 385 349 388 0.92 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF805-201 - 494 9.4e-13 48.1 71.3 11 12 0.0053 3.7 7.8 6.5 6 38 378 417 375 418 0.90 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF805-201 - 494 9.4e-13 48.1 71.3 12 12 0.0044 3 8.0 0.4 6 20 406 420 405 430 0.79 Zinc ribbon domain zf-C2H2_11 PF16622.5 29 ZNF805-201 - 494 5e-08 32.5 65.1 1 13 0.11 74 3.2 0.0 3 26 68 91 66 92 0.87 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF805-201 - 494 5e-08 32.5 65.1 2 13 0.0082 5.6 6.8 0.5 6 26 99 118 97 120 0.70 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF805-201 - 494 5e-08 32.5 65.1 3 13 0.012 8.3 6.3 0.4 5 26 126 147 123 148 0.88 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF805-201 - 494 5e-08 32.5 65.1 4 13 0.035 24 4.8 0.2 5 15 154 164 151 168 0.90 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF805-201 - 494 5e-08 32.5 65.1 5 13 0.5 3.5e+02 1.1 0.1 7 26 184 203 182 204 0.76 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF805-201 - 494 5e-08 32.5 65.1 6 13 0.73 5e+02 0.6 0.1 5 14 210 219 207 223 0.80 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF805-201 - 494 5e-08 32.5 65.1 7 13 0.076 53 3.7 0.4 6 26 239 259 236 260 0.87 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF805-201 - 494 5e-08 32.5 65.1 8 13 0.00047 0.33 10.8 0.5 6 26 267 287 264 288 0.93 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF805-201 - 494 5e-08 32.5 65.1 9 13 0.98 6.8e+02 0.2 2.1 7 15 296 304 294 313 0.86 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF805-201 - 494 5e-08 32.5 65.1 10 13 0.0035 2.4 8.0 0.1 6 26 323 343 320 344 0.91 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF805-201 - 494 5e-08 32.5 65.1 11 13 0.004 2.8 7.8 0.2 6 26 351 371 348 372 0.93 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF805-201 - 494 5e-08 32.5 65.1 12 13 0.0052 3.6 7.4 0.3 6 26 379 399 376 400 0.91 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF805-201 - 494 5e-08 32.5 65.1 13 13 0.00061 0.42 10.4 0.8 6 26 407 427 404 428 0.92 zinc-finger C2H2-type # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF805-201.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF805-201.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF805-201.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF805-201.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF805-201.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:14:51 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZNF805-202 - 625 2.4e-106 343.9 89.8 1 14 0.002 1.8 9.2 0.2 12 25 198 211 189 212 0.89 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF805-202 - 625 2.4e-106 343.9 89.8 2 14 2.4e-10 2.1e-07 31.0 0.6 2 25 216 239 216 240 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF805-202 - 625 2.4e-106 343.9 89.8 3 14 1.5e-09 1.3e-06 28.5 1.3 2 25 244 267 243 268 0.89 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF805-202 - 625 2.4e-106 343.9 89.8 4 14 2.5e-11 2.3e-08 34.1 3.0 1 26 271 296 271 296 0.97 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF805-202 - 625 2.4e-106 343.9 89.8 5 14 2e-09 1.8e-06 28.1 1.0 4 24 302 322 300 323 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF805-202 - 625 2.4e-106 343.9 89.8 6 14 4.8e-09 4.3e-06 26.9 1.0 3 26 329 352 327 352 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF805-202 - 625 2.4e-106 343.9 89.8 7 14 2.5e-11 2.2e-08 34.1 0.3 2 24 356 378 355 378 0.97 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF805-202 - 625 2.4e-106 343.9 89.8 8 14 8.2e-09 7.3e-06 26.2 1.1 4 26 386 408 383 408 0.87 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF805-202 - 625 2.4e-106 343.9 89.8 9 14 1.2e-12 1.1e-09 38.3 1.9 2 26 412 436 411 436 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF805-202 - 625 2.4e-106 343.9 89.8 10 14 9.2e-10 8.2e-07 29.2 1.2 5 26 443 464 440 464 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF805-202 - 625 2.4e-106 343.9 89.8 11 14 4.6e-12 4.1e-09 36.5 0.2 1 25 467 491 467 492 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF805-202 - 625 2.4e-106 343.9 89.8 12 14 1.6e-11 1.4e-08 34.8 0.2 1 24 495 518 495 518 0.97 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF805-202 - 625 2.4e-106 343.9 89.8 13 14 4e-12 3.6e-09 36.6 0.1 1 25 523 547 523 548 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF805-202 - 625 2.4e-106 343.9 89.8 14 14 0.0051 4.6 7.8 0.1 1 14 551 564 551 568 0.89 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZNF805-202 - 625 4.4e-65 212.7 102.7 1 13 2.5e-07 0.00022 21.5 0.8 1 23 201 223 201 223 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF805-202 - 625 4.4e-65 212.7 102.7 2 13 2e-06 0.0018 18.6 2.6 1 23 229 251 229 251 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF805-202 - 625 4.4e-65 212.7 102.7 3 13 2.2e-09 1.9e-06 28.0 2.8 1 23 257 279 257 279 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF805-202 - 625 4.4e-65 212.7 102.7 4 13 1.5e-06 0.0013 19.0 3.3 1 23 285 307 285 307 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF805-202 - 625 4.4e-65 212.7 102.7 5 13 1.8e-06 0.0016 18.8 0.2 1 23 313 335 313 335 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF805-202 - 625 4.4e-65 212.7 102.7 6 13 4.1e-08 3.6e-05 24.0 2.7 1 23 341 363 341 363 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF805-202 - 625 4.4e-65 212.7 102.7 7 13 1.3e-05 0.012 16.0 0.7 1 23 369 391 369 391 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF805-202 - 625 4.4e-65 212.7 102.7 8 13 2.9e-08 2.6e-05 24.4 2.3 1 23 397 419 397 419 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF805-202 - 625 4.4e-65 212.7 102.7 9 13 5.9e-06 0.0053 17.2 3.6 1 23 425 447 425 447 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF805-202 - 625 4.4e-65 212.7 102.7 10 13 1.1e-07 9.7e-05 22.6 0.2 1 23 453 475 453 475 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF805-202 - 625 4.4e-65 212.7 102.7 11 13 3.5e-09 3.1e-06 27.3 0.5 1 23 481 503 481 503 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF805-202 - 625 4.4e-65 212.7 102.7 12 13 0.0016 1.5 9.5 0.6 1 23 509 531 509 531 0.92 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF805-202 - 625 4.4e-65 212.7 102.7 13 13 1e-09 9.2e-07 29.0 0.9 1 23 537 559 537 559 0.99 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZNF805-202 - 625 3.7e-32 108.2 98.7 1 13 2.8e-05 0.025 15.4 0.9 1 23 201 223 201 224 0.87 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF805-202 - 625 3.7e-32 108.2 98.7 2 13 1.2e-05 0.011 16.6 1.7 1 20 229 249 229 252 0.73 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF805-202 - 625 3.7e-32 108.2 98.7 3 13 3.1e-05 0.027 15.3 2.1 1 23 257 279 257 280 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF805-202 - 625 3.7e-32 108.2 98.7 4 13 0.015 13 6.9 1.7 1 19 285 303 285 307 0.78 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF805-202 - 625 3.7e-32 108.2 98.7 5 13 6.7e-05 0.06 14.2 0.2 1 23 313 335 313 336 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF805-202 - 625 3.7e-32 108.2 98.7 6 13 0.073 66 4.8 2.4 1 23 341 363 341 364 0.78 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF805-202 - 625 3.7e-32 108.2 98.7 7 13 9.6e-05 0.086 13.7 1.1 1 23 369 391 369 392 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF805-202 - 625 3.7e-32 108.2 98.7 8 13 0.00033 0.3 12.1 1.8 1 23 397 419 397 420 0.90 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF805-202 - 625 3.7e-32 108.2 98.7 9 13 0.0026 2.4 9.3 3.5 1 23 425 447 425 448 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF805-202 - 625 3.7e-32 108.2 98.7 10 13 4.5e-06 0.0041 17.9 0.3 1 23 453 475 453 476 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF805-202 - 625 3.7e-32 108.2 98.7 11 13 2.2e-05 0.02 15.7 0.3 1 23 481 503 481 504 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF805-202 - 625 3.7e-32 108.2 98.7 12 13 0.00084 0.75 10.8 0.7 1 23 509 531 509 532 0.90 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF805-202 - 625 3.7e-32 108.2 98.7 13 13 2.9e-06 0.0026 18.5 0.9 1 23 537 559 537 560 0.96 C2H2-type zinc finger KRAB PF01352.27 42 ZNF805-202 - 625 6e-24 83.4 0.5 1 1 1.3e-26 1.1e-23 82.6 0.5 1 42 10 51 10 51 0.99 KRAB box zf-C2H2_jaz PF12171.8 27 ZNF805-202 - 625 1.5e-15 57.0 61.9 1 13 0.00081 0.73 10.2 0.7 2 22 201 221 200 221 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF805-202 - 625 1.5e-15 57.0 61.9 2 13 0.00052 0.47 10.8 0.1 2 20 229 247 228 247 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF805-202 - 625 1.5e-15 57.0 61.9 3 13 0.002 1.8 9.0 0.4 2 22 257 277 256 277 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF805-202 - 625 1.5e-15 57.0 61.9 4 13 0.0037 3.3 8.1 0.6 2 24 285 307 284 307 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF805-202 - 625 1.5e-15 57.0 61.9 5 13 0.11 95 3.5 0.1 2 13 313 324 312 332 0.86 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF805-202 - 625 1.5e-15 57.0 61.9 6 13 0.023 20 5.6 1.0 2 18 341 357 340 363 0.79 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF805-202 - 625 1.5e-15 57.0 61.9 7 13 1.2 1.1e+03 0.1 0.8 2 11 369 378 368 388 0.83 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF805-202 - 625 1.5e-15 57.0 61.9 8 13 0.0005 0.45 10.9 0.3 2 22 397 417 396 417 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF805-202 - 625 1.5e-15 57.0 61.9 9 13 1.4 1.2e+03 -0.1 0.8 2 20 425 443 424 445 0.74 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF805-202 - 625 1.5e-15 57.0 61.9 10 13 9.7e-05 0.087 13.1 0.1 2 22 453 473 452 473 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF805-202 - 625 1.5e-15 57.0 61.9 11 13 0.012 11 6.5 0.0 2 22 481 501 480 501 0.91 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF805-202 - 625 1.5e-15 57.0 61.9 12 13 0.04 36 4.8 0.2 2 11 509 518 508 518 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF805-202 - 625 1.5e-15 57.0 61.9 13 13 0.0002 0.18 12.1 0.0 2 22 537 557 536 557 0.94 Zinc-finger double-stranded RNA-binding XPA_N PF01286.18 32 ZNF805-202 - 625 6.7e-14 51.6 63.1 1 13 0.079 71 3.6 0.2 3 16 202 215 201 219 0.82 XPA protein N-terminal XPA_N PF01286.18 32 ZNF805-202 - 625 6.7e-14 51.6 63.1 2 13 0.00034 0.3 11.1 0.2 3 17 230 244 228 249 0.82 XPA protein N-terminal XPA_N PF01286.18 32 ZNF805-202 - 625 6.7e-14 51.6 63.1 3 13 0.0065 5.8 7.0 0.1 3 12 258 267 256 275 0.86 XPA protein N-terminal XPA_N PF01286.18 32 ZNF805-202 - 625 6.7e-14 51.6 63.1 4 13 0.018 16 5.7 0.2 3 12 286 295 284 296 0.89 XPA protein N-terminal XPA_N PF01286.18 32 ZNF805-202 - 625 6.7e-14 51.6 63.1 5 13 0.0093 8.4 6.5 0.3 3 13 314 324 312 324 0.90 XPA protein N-terminal XPA_N PF01286.18 32 ZNF805-202 - 625 6.7e-14 51.6 63.1 6 13 0.0024 2.1 8.4 0.1 3 17 342 357 340 359 0.82 XPA protein N-terminal XPA_N PF01286.18 32 ZNF805-202 - 625 6.7e-14 51.6 63.1 7 13 0.0026 2.3 8.3 0.7 3 14 370 381 368 385 0.92 XPA protein N-terminal XPA_N PF01286.18 32 ZNF805-202 - 625 6.7e-14 51.6 63.1 8 13 0.0023 2.1 8.5 0.1 3 16 398 412 396 415 0.78 XPA protein N-terminal XPA_N PF01286.18 32 ZNF805-202 - 625 6.7e-14 51.6 63.1 9 13 0.038 34 4.6 0.6 3 12 426 435 424 437 0.88 XPA protein N-terminal XPA_N PF01286.18 32 ZNF805-202 - 625 6.7e-14 51.6 63.1 10 13 0.009 8 6.6 0.2 3 12 454 463 452 473 0.88 XPA protein N-terminal XPA_N PF01286.18 32 ZNF805-202 - 625 6.7e-14 51.6 63.1 11 13 0.011 10 6.3 0.2 3 11 482 490 480 492 0.88 XPA protein N-terminal XPA_N PF01286.18 32 ZNF805-202 - 625 6.7e-14 51.6 63.1 12 13 0.0049 4.4 7.4 0.6 3 14 510 521 508 522 0.88 XPA protein N-terminal XPA_N PF01286.18 32 ZNF805-202 - 625 6.7e-14 51.6 63.1 13 13 0.0065 5.8 7.0 0.3 3 14 538 549 536 553 0.90 XPA protein N-terminal zf-C2H2_6 PF13912.6 27 ZNF805-202 - 625 8.3e-14 51.2 95.0 1 13 0.0014 1.3 9.2 1.4 2 12 201 211 200 212 0.91 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF805-202 - 625 8.3e-14 51.2 95.0 2 13 0.00017 0.15 12.1 1.0 2 12 229 239 229 244 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF805-202 - 625 8.3e-14 51.2 95.0 3 13 0.011 9.7 6.3 1.1 2 13 257 268 257 281 0.78 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF805-202 - 625 8.3e-14 51.2 95.0 4 13 0.0021 1.8 8.6 0.9 2 11 285 294 285 295 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF805-202 - 625 8.3e-14 51.2 95.0 5 13 0.0042 3.7 7.6 0.9 2 12 313 323 313 323 0.92 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF805-202 - 625 8.3e-14 51.2 95.0 6 13 0.0054 4.9 7.3 2.4 2 24 341 363 341 366 0.85 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF805-202 - 625 8.3e-14 51.2 95.0 7 13 0.0027 2.4 8.2 1.4 2 11 369 378 369 387 0.91 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF805-202 - 625 8.3e-14 51.2 95.0 8 13 0.043 39 4.4 0.8 2 12 397 407 397 408 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF805-202 - 625 8.3e-14 51.2 95.0 9 13 0.0082 7.3 6.7 2.1 2 12 425 435 425 448 0.90 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF805-202 - 625 8.3e-14 51.2 95.0 10 13 0.00056 0.5 10.4 0.2 2 12 453 463 453 471 0.91 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF805-202 - 625 8.3e-14 51.2 95.0 11 13 0.0018 1.6 8.8 0.3 2 24 481 503 481 506 0.82 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF805-202 - 625 8.3e-14 51.2 95.0 12 13 0.0098 8.8 6.5 0.5 2 12 509 519 509 532 0.77 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF805-202 - 625 8.3e-14 51.2 95.0 13 13 3.3e-05 0.03 14.3 1.6 2 24 537 559 537 561 0.92 C2H2-type zinc finger Zn-ribbon_8 PF09723.10 40 ZNF805-202 - 625 3.8e-12 46.1 70.0 1 11 0.022 19 5.4 0.2 6 18 201 213 200 223 0.81 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF805-202 - 625 3.8e-12 46.1 70.0 2 11 3.2e-05 0.029 14.5 3.5 6 38 229 268 228 270 0.81 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF805-202 - 625 3.8e-12 46.1 70.0 3 11 0.011 9.6 6.4 0.2 6 17 257 268 256 282 0.81 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF805-202 - 625 3.8e-12 46.1 70.0 4 11 9.3e-06 0.0083 16.2 2.1 6 36 285 322 284 325 0.89 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF805-202 - 625 3.8e-12 46.1 70.0 5 11 0.034 30 4.8 8.3 6 34 341 376 340 380 0.80 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF805-202 - 625 3.8e-12 46.1 70.0 6 11 5e-05 0.045 13.9 2.2 6 35 397 433 396 436 0.91 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF805-202 - 625 3.8e-12 46.1 70.0 7 11 0.0005 0.45 10.7 5.3 6 35 425 461 423 466 0.88 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF805-202 - 625 3.8e-12 46.1 70.0 8 11 0.00022 0.2 11.8 4.0 6 38 453 492 452 494 0.83 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF805-202 - 625 3.8e-12 46.1 70.0 9 11 0.00064 0.57 10.3 4.5 6 34 481 516 480 520 0.92 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF805-202 - 625 3.8e-12 46.1 70.0 10 11 0.0033 3 8.0 5.7 6 38 509 548 508 549 0.89 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF805-202 - 625 3.8e-12 46.1 70.0 11 11 0.0046 4.1 7.6 0.5 6 20 537 551 536 560 0.79 Zinc ribbon domain # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF805-202.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF805-202.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF805-202.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF805-202.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF805-202.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:14:52 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZNF808-201 - 903 1.5e-163 524.7 210.5 1 25 0.25 2.6e+02 2.3 0.1 2 17 90 117 89 119 0.69 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF808-201 - 903 1.5e-163 524.7 210.5 2 25 0.48 5.1e+02 1.4 0.4 8 25 224 241 221 242 0.87 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF808-201 - 903 1.5e-163 524.7 210.5 3 25 1.7e-06 0.0018 18.6 0.8 2 26 246 270 246 270 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF808-201 - 903 1.5e-163 524.7 210.5 4 25 2.1e-08 2.2e-05 24.7 6.8 5 25 277 297 274 298 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF808-201 - 903 1.5e-163 524.7 210.5 5 25 3.3e-07 0.00034 20.9 3.7 5 25 305 325 301 326 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF808-201 - 903 1.5e-163 524.7 210.5 6 25 1.9e-10 2e-07 31.1 0.1 1 25 329 353 329 354 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF808-201 - 903 1.5e-163 524.7 210.5 7 25 1.4e-10 1.4e-07 31.6 3.9 1 25 357 381 357 382 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF808-201 - 903 1.5e-163 524.7 210.5 8 25 7.3e-09 7.7e-06 26.1 1.7 2 26 386 410 385 410 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF808-201 - 903 1.5e-163 524.7 210.5 9 25 1.6e-10 1.7e-07 31.4 0.9 1 25 413 437 413 438 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF808-201 - 903 1.5e-163 524.7 210.5 10 25 1.4e-10 1.5e-07 31.5 3.3 2 25 442 465 441 466 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF808-201 - 903 1.5e-163 524.7 210.5 11 25 2.8e-10 3e-07 30.6 1.7 2 25 470 493 469 494 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF808-201 - 903 1.5e-163 524.7 210.5 12 25 1.1e-06 0.0011 19.3 3.8 5 26 501 522 499 522 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF808-201 - 903 1.5e-163 524.7 210.5 13 25 2e-07 0.00021 21.6 1.3 1 24 525 548 525 548 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF808-201 - 903 1.5e-163 524.7 210.5 14 25 3.9e-09 4.1e-06 27.0 0.6 4 25 556 577 554 578 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF808-201 - 903 1.5e-163 524.7 210.5 15 25 1.3e-12 1.3e-09 38.0 1.5 1 25 581 605 581 606 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF808-201 - 903 1.5e-163 524.7 210.5 16 25 5.2e-10 5.5e-07 29.7 0.2 1 25 609 633 609 633 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF808-201 - 903 1.5e-163 524.7 210.5 17 25 1.5e-10 1.6e-07 31.4 1.1 2 25 638 661 637 662 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF808-201 - 903 1.5e-163 524.7 210.5 18 25 2.2e-09 2.4e-06 27.7 0.8 1 25 665 689 665 690 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF808-201 - 903 1.5e-163 524.7 210.5 19 25 9.4e-09 9.9e-06 25.8 1.7 4 26 696 718 693 718 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF808-201 - 903 1.5e-163 524.7 210.5 20 25 2e-09 2.2e-06 27.9 2.2 5 25 725 745 721 746 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF808-201 - 903 1.5e-163 524.7 210.5 21 25 5.8e-07 0.00061 20.1 2.3 5 26 753 774 753 774 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF808-201 - 903 1.5e-163 524.7 210.5 22 25 3.1e-11 3.3e-08 33.6 0.7 1 26 777 802 777 802 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF808-201 - 903 1.5e-163 524.7 210.5 23 25 5.2e-11 5.5e-08 32.9 0.4 2 25 806 829 805 830 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF808-201 - 903 1.5e-163 524.7 210.5 24 25 1.5e-11 1.6e-08 34.6 3.5 1 25 833 857 833 858 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF808-201 - 903 1.5e-163 524.7 210.5 25 25 2.4e-11 2.6e-08 33.9 1.4 1 25 861 885 861 886 0.96 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZNF808-201 - 903 5e-102 329.0 236.1 1 25 1.2 1.2e+03 0.3 0.4 12 23 86 97 81 97 0.82 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF808-201 - 903 5e-102 329.0 236.1 2 25 0.51 5.4e+02 1.4 0.2 7 20 237 250 231 253 0.83 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF808-201 - 903 5e-102 329.0 236.1 3 25 0.087 92 3.8 7.2 1 21 259 279 259 281 0.90 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF808-201 - 903 5e-102 329.0 236.1 4 25 1.2e-05 0.012 16.0 7.6 1 23 287 309 287 309 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF808-201 - 903 5e-102 329.0 236.1 5 25 4.9e-08 5.2e-05 23.5 0.1 1 23 315 337 315 337 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF808-201 - 903 5e-102 329.0 236.1 6 25 9.1e-10 9.6e-07 28.9 2.6 1 23 343 365 343 365 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF808-201 - 903 5e-102 329.0 236.1 7 25 0.00024 0.26 11.8 3.6 1 23 371 393 371 393 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF808-201 - 903 5e-102 329.0 236.1 8 25 4.1e-08 4.3e-05 23.7 2.6 1 23 399 421 399 421 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF808-201 - 903 5e-102 329.0 236.1 9 25 2.8e-09 2.9e-06 27.4 1.2 1 23 427 449 427 449 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF808-201 - 903 5e-102 329.0 236.1 10 25 7.3e-06 0.0077 16.6 2.8 1 23 455 477 455 477 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF808-201 - 903 5e-102 329.0 236.1 11 25 4.9e-05 0.052 14.0 6.2 1 23 483 505 483 505 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF808-201 - 903 5e-102 329.0 236.1 12 25 9.7e-06 0.01 16.2 3.6 1 23 511 533 511 533 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF808-201 - 903 5e-102 329.0 236.1 13 25 5.3e-07 0.00056 20.2 0.5 1 23 539 561 539 561 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF808-201 - 903 5e-102 329.0 236.1 14 25 2.5e-09 2.6e-06 27.6 3.1 1 23 567 589 567 589 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF808-201 - 903 5e-102 329.0 236.1 15 25 2.2e-07 0.00023 21.4 0.2 1 23 595 617 595 617 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF808-201 - 903 5e-102 329.0 236.1 16 25 4.5e-06 0.0048 17.3 0.4 1 23 623 645 623 645 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF808-201 - 903 5e-102 329.0 236.1 17 25 5.2e-09 5.5e-06 26.6 1.6 1 23 651 673 651 673 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF808-201 - 903 5e-102 329.0 236.1 18 25 0.00021 0.22 12.1 2.7 1 23 679 701 679 701 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF808-201 - 903 5e-102 329.0 236.1 19 25 5.7e-06 0.006 17.0 4.6 1 23 707 729 707 729 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF808-201 - 903 5e-102 329.0 236.1 20 25 0.00011 0.11 13.0 4.5 1 23 735 757 735 757 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF808-201 - 903 5e-102 329.0 236.1 21 25 1e-07 0.00011 22.4 3.0 1 23 763 785 763 785 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF808-201 - 903 5e-102 329.0 236.1 22 25 2.4e-09 2.5e-06 27.6 0.5 1 23 791 813 791 813 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF808-201 - 903 5e-102 329.0 236.1 23 25 3.5e-08 3.7e-05 23.9 3.8 1 23 819 841 819 841 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF808-201 - 903 5e-102 329.0 236.1 24 25 2e-08 2.1e-05 24.7 2.7 1 23 847 869 847 869 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF808-201 - 903 5e-102 329.0 236.1 25 25 1.8e-08 1.9e-05 24.9 0.7 1 23 875 897 875 897 0.98 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZNF808-201 - 903 1.5e-53 174.8 219.3 1 24 0.2 2.1e+02 3.2 0.2 2 23 232 253 231 254 0.77 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF808-201 - 903 1.5e-53 174.8 219.3 2 24 0.19 2e+02 3.3 6.8 1 20 259 278 259 281 0.78 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF808-201 - 903 1.5e-53 174.8 219.3 3 24 0.00043 0.45 11.5 6.4 1 23 287 309 287 310 0.90 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF808-201 - 903 1.5e-53 174.8 219.3 4 24 8.4e-05 0.089 13.7 0.2 1 23 315 337 315 338 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF808-201 - 903 1.5e-53 174.8 219.3 5 24 1.1e-05 0.012 16.4 2.0 1 23 343 365 343 366 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF808-201 - 903 1.5e-53 174.8 219.3 6 24 0.0002 0.21 12.5 3.3 1 23 371 393 371 394 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF808-201 - 903 1.5e-53 174.8 219.3 7 24 0.00038 0.4 11.6 1.9 1 23 399 421 399 422 0.87 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF808-201 - 903 1.5e-53 174.8 219.3 8 24 3.2e-06 0.0034 18.1 1.1 1 23 427 449 427 450 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF808-201 - 903 1.5e-53 174.8 219.3 9 24 1.8e-05 0.02 15.7 2.1 1 23 455 477 455 478 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF808-201 - 903 1.5e-53 174.8 219.3 10 24 0.00022 0.23 12.4 5.0 1 23 483 505 483 506 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF808-201 - 903 1.5e-53 174.8 219.3 11 24 0.00078 0.82 10.7 2.2 1 23 511 533 511 534 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF808-201 - 903 1.5e-53 174.8 219.3 12 24 0.00021 0.22 12.4 0.4 1 23 539 561 539 562 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF808-201 - 903 1.5e-53 174.8 219.3 13 24 1.2e-05 0.012 16.4 2.2 1 23 567 589 567 590 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF808-201 - 903 1.5e-53 174.8 219.3 14 24 9.3e-05 0.098 13.6 0.3 1 23 595 617 595 618 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF808-201 - 903 1.5e-53 174.8 219.3 15 24 0.0033 3.5 8.7 0.3 1 23 623 645 623 646 0.91 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF808-201 - 903 1.5e-53 174.8 219.3 16 24 0.00026 0.28 12.1 0.9 1 23 651 673 651 674 0.84 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF808-201 - 903 1.5e-53 174.8 219.3 17 24 0.001 1.1 10.3 2.6 1 23 679 701 679 702 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF808-201 - 903 1.5e-53 174.8 219.3 18 24 7.9e-05 0.083 13.8 3.8 1 23 707 729 707 730 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF808-201 - 903 1.5e-53 174.8 219.3 19 24 7.6e-05 0.08 13.8 4.2 1 23 735 757 735 758 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF808-201 - 903 1.5e-53 174.8 219.3 20 24 0.0011 1.2 10.2 2.1 1 23 763 785 763 786 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF808-201 - 903 1.5e-53 174.8 219.3 21 24 1.4e-05 0.015 16.1 0.4 1 23 791 813 791 814 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF808-201 - 903 1.5e-53 174.8 219.3 22 24 3.3e-05 0.035 14.9 2.8 1 23 819 841 819 842 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF808-201 - 903 1.5e-53 174.8 219.3 23 24 6.9e-06 0.0073 17.1 2.0 1 23 847 869 847 870 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF808-201 - 903 1.5e-53 174.8 219.3 24 24 6.9e-06 0.0073 17.1 0.3 1 23 875 897 875 898 0.95 C2H2-type zinc finger KRAB PF01352.27 42 ZNF808-201 - 903 1.7e-20 72.4 0.0 1 1 2.8e-23 3e-20 71.6 0.0 2 42 24 64 23 64 0.96 KRAB box zf-C2H2_6 PF13912.6 27 ZNF808-201 - 903 1.1e-18 66.7 207.9 1 24 0.00084 0.89 9.6 7.1 2 24 259 281 258 284 0.95 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF808-201 - 903 1.1e-18 66.7 207.9 2 24 0.002 2.1 8.5 7.0 2 20 287 305 287 310 0.84 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF808-201 - 903 1.1e-18 66.7 207.9 3 24 7.2e-05 0.076 13.0 0.2 2 24 315 337 315 340 0.86 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF808-201 - 903 1.1e-18 66.7 207.9 4 24 0.0018 1.9 8.6 1.3 2 14 343 355 343 365 0.81 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF808-201 - 903 1.1e-18 66.7 207.9 5 24 0.014 15 5.7 0.8 2 11 371 380 371 381 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF808-201 - 903 1.1e-18 66.7 207.9 6 24 0.00042 0.45 10.6 1.7 2 20 399 417 398 421 0.86 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF808-201 - 903 1.1e-18 66.7 207.9 7 24 0.0014 1.5 8.9 0.9 2 24 427 449 427 452 0.81 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF808-201 - 903 1.1e-18 66.7 207.9 8 24 0.52 5.5e+02 0.7 3.0 2 11 455 464 455 466 0.87 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF808-201 - 903 1.1e-18 66.7 207.9 9 24 0.0024 2.6 8.2 3.2 2 24 483 505 482 508 0.85 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF808-201 - 903 1.1e-18 66.7 207.9 10 24 0.0044 4.7 7.3 1.0 2 12 511 521 511 533 0.77 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF808-201 - 903 1.1e-18 66.7 207.9 11 24 0.00024 0.25 11.4 0.2 2 11 539 548 538 562 0.89 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF808-201 - 903 1.1e-18 66.7 207.9 12 24 0.0008 0.84 9.7 2.3 2 24 567 589 567 592 0.87 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF808-201 - 903 1.1e-18 66.7 207.9 13 24 0.00028 0.3 11.1 0.6 2 24 595 617 595 620 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF808-201 - 903 1.1e-18 66.7 207.9 14 24 0.1 1.1e+02 3.0 0.3 2 11 623 632 623 633 0.86 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF808-201 - 903 1.1e-18 66.7 207.9 15 24 1e-06 0.0011 18.9 1.4 2 24 651 673 650 675 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF808-201 - 903 1.1e-18 66.7 207.9 16 24 0.011 12 6.0 2.8 2 11 679 688 678 694 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF808-201 - 903 1.1e-18 66.7 207.9 17 24 0.00087 0.92 9.6 2.4 2 22 707 727 707 732 0.76 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF808-201 - 903 1.1e-18 66.7 207.9 18 24 0.001 1.1 9.4 2.3 2 12 735 745 735 746 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF808-201 - 903 1.1e-18 66.7 207.9 19 24 9.6 1e+04 -3.3 0.0 7 14 752 759 751 759 0.78 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF808-201 - 903 1.1e-18 66.7 207.9 20 24 0.04 42 4.3 0.9 2 24 763 785 763 788 0.82 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF808-201 - 903 1.1e-18 66.7 207.9 21 24 0.0025 2.6 8.1 0.7 2 12 791 801 790 802 0.90 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF808-201 - 903 1.1e-18 66.7 207.9 22 24 0.045 47 4.1 5.5 2 13 819 830 819 840 0.82 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF808-201 - 903 1.1e-18 66.7 207.9 23 24 0.63 6.6e+02 0.5 4.5 2 13 847 858 847 868 0.84 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF808-201 - 903 1.1e-18 66.7 207.9 24 24 0.0028 3 8.0 0.6 2 12 875 885 875 886 0.94 C2H2-type zinc finger zf-met PF12874.7 25 ZNF808-201 - 903 6.7e-16 58.1 167.1 1 21 0.00055 0.58 10.6 1.6 1 19 259 277 259 279 0.94 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF808-201 - 903 6.7e-16 58.1 167.1 2 21 0.13 1.4e+02 3.0 3.2 1 19 287 305 287 305 0.93 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF808-201 - 903 6.7e-16 58.1 167.1 3 21 0.28 2.9e+02 2.0 0.3 1 20 315 334 315 338 0.87 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF808-201 - 903 6.7e-16 58.1 167.1 4 21 0.025 26 5.4 1.2 1 20 343 362 343 363 0.93 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF808-201 - 903 6.7e-16 58.1 167.1 5 21 0.0017 1.8 9.1 3.6 1 21 371 391 371 393 0.93 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF808-201 - 903 6.7e-16 58.1 167.1 6 21 0.0068 7.2 7.2 0.9 1 19 399 417 399 417 0.95 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF808-201 - 903 6.7e-16 58.1 167.1 7 21 0.00021 0.22 12.0 0.7 1 21 427 447 427 450 0.91 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF808-201 - 903 6.7e-16 58.1 167.1 8 21 9.3e-05 0.098 13.1 1.5 1 20 455 474 455 478 0.91 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF808-201 - 903 6.7e-16 58.1 167.1 9 21 0.00092 0.97 9.9 1.2 1 19 483 501 483 503 0.94 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF808-201 - 903 6.7e-16 58.1 167.1 10 21 7.5e-05 0.079 13.4 0.4 1 21 539 559 539 562 0.91 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF808-201 - 903 6.7e-16 58.1 167.1 11 21 0.032 34 5.0 0.7 1 19 567 585 567 587 0.94 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF808-201 - 903 6.7e-16 58.1 167.1 12 21 3e-05 0.032 14.6 0.4 1 21 595 615 595 618 0.91 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF808-201 - 903 6.7e-16 58.1 167.1 13 21 0.0046 4.8 7.7 0.3 1 21 623 643 623 646 0.90 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF808-201 - 903 6.7e-16 58.1 167.1 14 21 0.21 2.2e+02 2.5 0.7 1 16 651 666 651 667 0.88 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF808-201 - 903 6.7e-16 58.1 167.1 15 21 0.003 3.2 8.3 1.9 1 21 679 699 679 701 0.91 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF808-201 - 903 6.7e-16 58.1 167.1 16 21 0.0079 8.3 7.0 3.1 1 19 707 725 707 729 0.92 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF808-201 - 903 6.7e-16 58.1 167.1 17 21 0.023 24 5.5 2.0 1 19 735 753 735 755 0.94 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF808-201 - 903 6.7e-16 58.1 167.1 18 21 0.0014 1.5 9.3 0.2 1 21 791 811 791 814 0.91 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF808-201 - 903 6.7e-16 58.1 167.1 19 21 0.36 3.8e+02 1.7 1.3 1 19 819 837 819 839 0.94 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF808-201 - 903 6.7e-16 58.1 167.1 20 21 8e-06 0.0084 16.5 0.6 1 19 847 865 847 866 0.96 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF808-201 - 903 6.7e-16 58.1 167.1 21 21 0.13 1.4e+02 3.1 0.2 1 19 875 893 875 896 0.88 Zinc-finger of C2H2 type BolA PF01722.18 76 ZNF808-201 - 903 1.3e-15 57.5 46.6 1 16 2.6 2.7e+03 -1.3 0.0 46 72 90 118 87 121 0.74 BolA-like protein BolA PF01722.18 76 ZNF808-201 - 903 1.3e-15 57.5 46.6 2 16 0.08 84 3.5 0.1 19 51 249 279 228 310 0.87 BolA-like protein BolA PF01722.18 76 ZNF808-201 - 903 1.3e-15 57.5 46.6 3 16 0.035 37 4.7 0.1 21 53 333 365 323 371 0.81 BolA-like protein BolA PF01722.18 76 ZNF808-201 - 903 1.3e-15 57.5 46.6 4 16 0.059 63 4.0 0.9 14 53 354 393 351 394 0.84 BolA-like protein BolA PF01722.18 76 ZNF808-201 - 903 1.3e-15 57.5 46.6 5 16 0.016 17 5.8 0.6 17 52 385 420 377 422 0.83 BolA-like protein BolA PF01722.18 76 ZNF808-201 - 903 1.3e-15 57.5 46.6 6 16 0.0058 6.1 7.2 0.9 16 53 412 449 408 451 0.84 BolA-like protein BolA PF01722.18 76 ZNF808-201 - 903 1.3e-15 57.5 46.6 7 16 3.2e-05 0.033 14.4 0.1 20 53 444 477 437 482 0.83 BolA-like protein BolA PF01722.18 76 ZNF808-201 - 903 1.3e-15 57.5 46.6 8 16 0.34 3.6e+02 1.5 0.2 25 55 533 563 522 567 0.85 BolA-like protein BolA PF01722.18 76 ZNF808-201 - 903 1.3e-15 57.5 46.6 9 16 0.15 1.6e+02 2.7 0.6 30 52 566 588 557 591 0.79 BolA-like protein BolA PF01722.18 76 ZNF808-201 - 903 1.3e-15 57.5 46.6 10 16 0.0011 1.2 9.5 0.9 19 53 611 645 577 647 0.84 BolA-like protein BolA PF01722.18 76 ZNF808-201 - 903 1.3e-15 57.5 46.6 11 16 0.0041 4.4 7.7 0.0 24 56 672 704 660 711 0.85 BolA-like protein BolA PF01722.18 76 ZNF808-201 - 903 1.3e-15 57.5 46.6 12 16 0.57 6e+02 0.8 0.1 30 53 706 729 699 732 0.85 BolA-like protein BolA PF01722.18 76 ZNF808-201 - 903 1.3e-15 57.5 46.6 13 16 0.16 1.7e+02 2.6 0.1 15 52 719 756 714 759 0.81 BolA-like protein BolA PF01722.18 76 ZNF808-201 - 903 1.3e-15 57.5 46.6 14 16 0.0018 1.9 8.8 0.1 25 54 785 814 773 818 0.84 BolA-like protein BolA PF01722.18 76 ZNF808-201 - 903 1.3e-15 57.5 46.6 15 16 2.4e-05 0.025 14.9 2.0 14 53 830 869 827 871 0.91 BolA-like protein BolA PF01722.18 76 ZNF808-201 - 903 1.3e-15 57.5 46.6 16 16 2.8 3e+03 -1.4 0.0 26 54 870 898 867 899 0.84 BolA-like protein Zn-ribbon_8 PF09723.10 40 ZNF808-201 - 903 1.3e-15 57.2 133.3 1 23 0.11 1.1e+02 3.0 9.2 5 34 258 294 258 296 0.75 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF808-201 - 903 1.3e-15 57.2 133.3 2 23 0.0093 9.8 6.4 1.3 6 16 287 297 286 307 0.86 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF808-201 - 903 1.3e-15 57.2 133.3 3 23 1.1e-05 0.012 15.8 3.2 6 36 315 352 314 356 0.89 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF808-201 - 903 1.3e-15 57.2 133.3 4 23 0.0024 2.5 8.3 3.9 6 34 343 378 341 382 0.83 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF808-201 - 903 1.3e-15 57.2 133.3 5 23 0.071 75 3.6 4.9 6 34 371 406 368 407 0.82 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF808-201 - 903 1.3e-15 57.2 133.3 6 23 0.0022 2.3 8.4 0.5 6 19 399 412 397 419 0.82 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF808-201 - 903 1.3e-15 57.2 133.3 7 23 0.0028 2.9 8.1 4.8 6 34 427 462 426 465 0.82 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF808-201 - 903 1.3e-15 57.2 133.3 8 23 0.0042 4.4 7.5 5.4 6 38 455 494 454 496 0.88 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF808-201 - 903 1.3e-15 57.2 133.3 9 23 0.011 12 6.2 0.7 6 19 483 496 481 502 0.86 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF808-201 - 903 1.3e-15 57.2 133.3 10 23 0.0028 2.9 8.1 0.2 6 19 511 524 510 531 0.87 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF808-201 - 903 1.3e-15 57.2 133.3 11 23 0.00014 0.15 12.2 1.4 6 35 539 575 538 579 0.85 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF808-201 - 903 1.3e-15 57.2 133.3 12 23 0.0034 3.5 7.8 0.4 6 18 567 579 566 589 0.81 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF808-201 - 903 1.3e-15 57.2 133.3 13 23 0.023 25 5.1 4.1 6 33 595 629 594 633 0.76 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF808-201 - 903 1.3e-15 57.2 133.3 14 23 0.00044 0.47 10.6 2.8 6 34 623 658 622 661 0.86 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF808-201 - 903 1.3e-15 57.2 133.3 15 23 0.0047 5 7.3 5.0 6 34 651 686 649 693 0.79 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF808-201 - 903 1.3e-15 57.2 133.3 16 23 0.32 3.4e+02 1.5 1.0 6 15 679 688 676 698 0.89 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF808-201 - 903 1.3e-15 57.2 133.3 17 23 0.022 23 5.2 6.1 6 35 707 743 706 748 0.77 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF808-201 - 903 1.3e-15 57.2 133.3 18 23 0.054 57 3.9 0.6 6 16 735 745 734 753 0.87 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF808-201 - 903 1.3e-15 57.2 133.3 19 23 0.001 1.1 9.4 1.9 6 34 763 798 762 802 0.61 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF808-201 - 903 1.3e-15 57.2 133.3 20 23 0.0023 2.4 8.4 3.4 6 35 791 827 789 832 0.81 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF808-201 - 903 1.3e-15 57.2 133.3 21 23 0.0033 3.5 7.8 0.6 6 19 819 832 818 841 0.81 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF808-201 - 903 1.3e-15 57.2 133.3 22 23 7.6e-05 0.08 13.1 3.5 6 35 847 883 846 887 0.88 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF808-201 - 903 1.3e-15 57.2 133.3 23 23 0.0058 6.1 7.1 0.4 6 17 875 886 873 894 0.85 Zinc ribbon domain zf-C2H2_jaz PF12171.8 27 ZNF808-201 - 903 3.9e-13 49.3 127.0 1 21 0.17 1.8e+02 2.5 2.3 1 15 258 272 258 279 0.86 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF808-201 - 903 3.9e-13 49.3 127.0 2 21 0.058 61 4.1 0.3 2 12 287 297 286 303 0.89 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF808-201 - 903 3.9e-13 49.3 127.0 3 21 0.093 98 3.4 0.1 2 20 315 333 314 335 0.87 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF808-201 - 903 3.9e-13 49.3 127.0 4 21 0.037 39 4.7 0.7 2 22 343 363 342 363 0.91 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF808-201 - 903 3.9e-13 49.3 127.0 5 21 0.039 41 4.6 2.4 2 20 371 389 370 391 0.85 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF808-201 - 903 3.9e-13 49.3 127.0 6 21 0.011 12 6.4 0.8 2 20 399 417 398 417 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF808-201 - 903 3.9e-13 49.3 127.0 7 21 4.2e-05 0.045 14.1 0.3 2 22 427 447 426 447 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF808-201 - 903 3.9e-13 49.3 127.0 8 21 0.16 1.7e+02 2.6 0.5 2 20 455 473 454 475 0.78 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF808-201 - 903 3.9e-13 49.3 127.0 9 21 0.016 17 5.8 0.7 2 18 483 499 482 503 0.84 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF808-201 - 903 3.9e-13 49.3 127.0 10 21 0.0044 4.7 7.6 0.1 2 20 539 557 538 559 0.84 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF808-201 - 903 3.9e-13 49.3 127.0 11 21 0.045 47 4.4 0.4 2 21 567 586 566 587 0.90 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF808-201 - 903 3.9e-13 49.3 127.0 12 21 5.4e-05 0.057 13.7 0.1 2 22 595 615 594 615 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF808-201 - 903 3.9e-13 49.3 127.0 13 21 0.2 2.1e+02 2.4 0.0 2 20 623 641 622 643 0.75 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF808-201 - 903 3.9e-13 49.3 127.0 14 21 0.2 2.1e+02 2.3 0.2 2 12 651 661 650 670 0.87 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF808-201 - 903 3.9e-13 49.3 127.0 15 21 0.033 35 4.9 1.2 2 11 679 688 678 689 0.89 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF808-201 - 903 3.9e-13 49.3 127.0 16 21 0.0016 1.7 9.0 0.8 2 20 707 725 706 727 0.86 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF808-201 - 903 3.9e-13 49.3 127.0 17 21 0.031 33 4.9 0.7 2 12 735 745 734 755 0.82 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF808-201 - 903 3.9e-13 49.3 127.0 18 21 0.00091 0.95 9.8 0.2 2 22 791 811 790 811 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF808-201 - 903 3.9e-13 49.3 127.0 19 21 0.027 29 5.1 0.5 2 20 819 837 818 837 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF808-201 - 903 3.9e-13 49.3 127.0 20 21 2.6e-05 0.028 14.7 0.4 2 20 847 865 846 866 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF808-201 - 903 3.9e-13 49.3 127.0 21 21 0.041 43 4.6 0.2 2 20 875 893 874 895 0.87 Zinc-finger double-stranded RNA-binding zf-C2H2_11 PF16622.5 29 ZNF808-201 - 903 9.4e-09 34.9 143.1 1 22 0.012 13 5.7 3.0 5 25 287 307 284 309 0.89 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF808-201 - 903 9.4e-09 34.9 143.1 2 22 0.36 3.8e+02 1.0 0.0 5 14 315 324 314 336 0.82 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF808-201 - 903 9.4e-09 34.9 143.1 3 22 0.00035 0.37 10.6 0.7 5 25 343 363 340 365 0.91 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF808-201 - 903 9.4e-09 34.9 143.1 4 22 0.95 1e+03 -0.4 0.9 5 26 371 392 370 393 0.87 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF808-201 - 903 9.4e-09 34.9 143.1 5 22 1.4e-05 0.015 15.1 1.0 3 24 397 418 396 421 0.90 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF808-201 - 903 9.4e-09 34.9 143.1 6 22 0.0026 2.7 7.8 0.0 5 26 427 448 424 449 0.93 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF808-201 - 903 9.4e-09 34.9 143.1 7 22 0.00085 0.9 9.4 0.4 5 26 455 476 452 477 0.92 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF808-201 - 903 9.4e-09 34.9 143.1 8 22 0.092 97 2.9 4.3 3 25 481 503 480 505 0.91 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF808-201 - 903 9.4e-09 34.9 143.1 9 22 0.025 26 4.7 0.5 5 25 511 531 508 533 0.89 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF808-201 - 903 9.4e-09 34.9 143.1 10 22 1.7 1.8e+03 -1.2 0.0 3 12 537 546 536 560 0.74 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF808-201 - 903 9.4e-09 34.9 143.1 11 22 8.9e-05 0.094 12.5 1.1 5 25 567 587 565 589 0.93 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF808-201 - 903 9.4e-09 34.9 143.1 12 22 3.5 3.7e+03 -2.2 0.0 5 26 595 616 594 617 0.82 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF808-201 - 903 9.4e-09 34.9 143.1 13 22 0.0032 3.4 7.5 0.0 5 26 623 644 620 645 0.94 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF808-201 - 903 9.4e-09 34.9 143.1 14 22 9.4e-05 0.099 12.4 0.2 3 25 649 671 648 673 0.92 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF808-201 - 903 9.4e-09 34.9 143.1 15 22 2.8 3e+03 -1.9 0.3 4 11 678 685 676 700 0.67 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF808-201 - 903 9.4e-09 34.9 143.1 16 22 0.026 28 4.6 2.0 5 26 707 728 706 729 0.95 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF808-201 - 903 9.4e-09 34.9 143.1 17 22 0.96 1e+03 -0.4 2.0 5 25 735 755 732 757 0.86 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF808-201 - 903 9.4e-09 34.9 143.1 18 22 0.14 1.4e+02 2.3 0.2 5 25 763 783 760 785 0.83 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF808-201 - 903 9.4e-09 34.9 143.1 19 22 0.023 24 4.8 0.1 3 26 789 812 788 813 0.93 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF808-201 - 903 9.4e-09 34.9 143.1 20 22 7.4e-05 0.078 12.7 0.3 5 26 819 840 816 841 0.94 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF808-201 - 903 9.4e-09 34.9 143.1 21 22 0.0016 1.7 8.5 0.2 5 26 847 868 844 869 0.93 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF808-201 - 903 9.4e-09 34.9 143.1 22 22 0.022 23 4.9 0.1 5 24 875 894 872 897 0.81 zinc-finger C2H2-type C1_1 PF00130.22 53 ZNF808-201 - 903 1.1e-07 31.6 118.8 1 20 0.053 56 3.7 6.4 9 39 256 281 233 285 0.64 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF808-201 - 903 1.1e-07 31.6 118.8 2 20 0.29 3e+02 1.4 9.2 9 37 284 323 277 327 0.80 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF808-201 - 903 1.1e-07 31.6 118.8 3 20 0.0057 6 6.8 1.9 9 38 312 352 305 355 0.80 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF808-201 - 903 1.1e-07 31.6 118.8 4 20 0.02 21 5.1 4.2 5 38 337 380 333 390 0.77 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF808-201 - 903 1.1e-07 31.6 118.8 5 20 0.026 28 4.7 3.9 10 38 369 408 360 412 0.84 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF808-201 - 903 1.1e-07 31.6 118.8 6 20 0.0014 1.4 8.8 2.0 1 36 417 462 417 465 0.86 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF808-201 - 903 1.1e-07 31.6 118.8 7 20 0.008 8.4 6.4 5.6 6 50 450 508 444 510 0.85 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF808-201 - 903 1.1e-07 31.6 118.8 8 20 0.024 25 4.9 4.1 9 38 480 520 471 523 0.80 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF808-201 - 903 1.1e-07 31.6 118.8 9 20 0.0039 4.1 7.4 1.7 9 37 508 547 501 550 0.83 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF808-201 - 903 1.1e-07 31.6 118.8 10 20 0.0024 2.6 8.0 1.9 6 38 533 576 528 581 0.84 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF808-201 - 903 1.1e-07 31.6 118.8 11 20 0.00043 0.45 10.4 1.0 6 38 561 604 557 607 0.84 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF808-201 - 903 1.1e-07 31.6 118.8 12 20 0.003 3.1 7.8 0.3 9 36 592 630 581 633 0.81 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF808-201 - 903 1.1e-07 31.6 118.8 13 20 0.01 11 6.1 1.0 9 37 620 659 613 662 0.82 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF808-201 - 903 1.1e-07 31.6 118.8 14 20 0.0026 2.7 7.9 1.8 9 36 648 686 641 688 0.82 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF808-201 - 903 1.1e-07 31.6 118.8 15 20 0.0018 1.9 8.5 5.1 10 50 677 732 667 734 0.86 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF808-201 - 903 1.1e-07 31.6 118.8 16 20 0.0089 9.4 6.2 7.0 9 50 704 760 697 762 0.87 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF808-201 - 903 1.1e-07 31.6 118.8 17 20 0.062 65 3.5 4.6 9 36 732 770 725 772 0.74 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF808-201 - 903 1.1e-07 31.6 118.8 18 20 0.0025 2.7 8.0 0.2 9 36 760 798 753 800 0.85 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF808-201 - 903 1.1e-07 31.6 118.8 19 20 0.00068 0.72 9.8 2.0 2 38 809 856 809 863 0.85 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF808-201 - 903 1.1e-07 31.6 118.8 20 20 0.011 12 5.9 0.2 1 22 865 885 865 897 0.77 Phorbol esters/diacylglycerol binding domain (C1 domain) # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF808-201.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF808-201.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF808-201.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF808-201.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF808-201.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:14:53 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF808-202.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF808-202.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF808-202.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF808-202.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF808-202.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:14:53 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF808-203.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF808-203.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF808-203.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF808-203.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF808-203.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:14:53 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF808-204.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF808-204.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF808-204.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF808-204.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF808-204.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:14:54 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF808-205.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF808-205.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF808-205.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF808-205.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF808-205.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:14:54 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZNF808-206 - 834 1.7e-164 527.7 210.5 1 25 0.21 2.4e+02 2.4 0.1 2 17 21 48 20 50 0.69 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF808-206 - 834 1.7e-164 527.7 210.5 2 25 0.41 4.6e+02 1.5 0.4 8 25 155 172 152 173 0.87 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF808-206 - 834 1.7e-164 527.7 210.5 3 25 1.5e-06 0.0016 18.8 0.8 2 26 177 201 177 201 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF808-206 - 834 1.7e-164 527.7 210.5 4 25 1.8e-08 2e-05 24.8 6.8 5 25 208 228 205 229 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF808-206 - 834 1.7e-164 527.7 210.5 5 25 2.8e-07 0.00031 21.0 3.7 5 25 236 256 232 257 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF808-206 - 834 1.7e-164 527.7 210.5 6 25 1.7e-10 1.9e-07 31.2 0.1 1 25 260 284 260 285 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF808-206 - 834 1.7e-164 527.7 210.5 7 25 1.2e-10 1.3e-07 31.7 3.9 1 25 288 312 288 313 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF808-206 - 834 1.7e-164 527.7 210.5 8 25 6.3e-09 7e-06 26.2 1.7 2 26 317 341 316 341 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF808-206 - 834 1.7e-164 527.7 210.5 9 25 1.4e-10 1.5e-07 31.5 0.9 1 25 344 368 344 369 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF808-206 - 834 1.7e-164 527.7 210.5 10 25 1.2e-10 1.4e-07 31.6 3.3 2 25 373 396 372 397 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF808-206 - 834 1.7e-164 527.7 210.5 11 25 2.4e-10 2.7e-07 30.7 1.7 2 25 401 424 400 425 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF808-206 - 834 1.7e-164 527.7 210.5 12 25 9.2e-07 0.001 19.4 3.8 5 26 432 453 430 453 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF808-206 - 834 1.7e-164 527.7 210.5 13 25 1.7e-07 0.00019 21.7 1.3 1 24 456 479 456 479 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF808-206 - 834 1.7e-164 527.7 210.5 14 25 3.3e-09 3.7e-06 27.1 0.6 4 25 487 508 485 509 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF808-206 - 834 1.7e-164 527.7 210.5 15 25 1.1e-12 1.2e-09 38.1 1.5 1 25 512 536 512 537 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF808-206 - 834 1.7e-164 527.7 210.5 16 25 4.5e-10 5e-07 29.9 0.2 1 25 540 564 540 564 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF808-206 - 834 1.7e-164 527.7 210.5 17 25 1.3e-10 1.4e-07 31.6 1.1 2 25 569 592 568 593 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF808-206 - 834 1.7e-164 527.7 210.5 18 25 1.9e-09 2.2e-06 27.9 0.8 1 25 596 620 596 621 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF808-206 - 834 1.7e-164 527.7 210.5 19 25 8.1e-09 9.1e-06 25.9 1.7 4 26 627 649 624 649 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF808-206 - 834 1.7e-164 527.7 210.5 20 25 1.8e-09 2e-06 28.0 2.2 5 25 656 676 652 677 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF808-206 - 834 1.7e-164 527.7 210.5 21 25 5e-07 0.00056 20.2 2.3 5 26 684 705 684 705 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF808-206 - 834 1.7e-164 527.7 210.5 22 25 2.7e-11 3e-08 33.7 0.7 1 26 708 733 708 733 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF808-206 - 834 1.7e-164 527.7 210.5 23 25 4.5e-11 5e-08 33.0 0.4 2 25 737 760 736 761 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF808-206 - 834 1.7e-164 527.7 210.5 24 25 1.3e-11 1.5e-08 34.7 3.5 1 25 764 788 764 789 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF808-206 - 834 1.7e-164 527.7 210.5 25 25 2.1e-11 2.3e-08 34.1 1.4 1 25 792 816 792 817 0.96 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZNF808-206 - 834 5.8e-103 332.0 236.1 1 25 1 1.1e+03 0.4 0.4 12 23 17 28 12 28 0.82 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF808-206 - 834 5.8e-103 332.0 236.1 2 25 0.44 4.9e+02 1.5 0.2 7 20 168 181 162 184 0.83 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF808-206 - 834 5.8e-103 332.0 236.1 3 25 0.075 84 3.9 7.2 1 21 190 210 190 212 0.90 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF808-206 - 834 5.8e-103 332.0 236.1 4 25 1e-05 0.011 16.1 7.6 1 23 218 240 218 240 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF808-206 - 834 5.8e-103 332.0 236.1 5 25 4.2e-08 4.7e-05 23.6 0.1 1 23 246 268 246 268 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF808-206 - 834 5.8e-103 332.0 236.1 6 25 7.8e-10 8.8e-07 29.1 2.6 1 23 274 296 274 296 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF808-206 - 834 5.8e-103 332.0 236.1 7 25 0.00021 0.24 12.0 3.6 1 23 302 324 302 324 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF808-206 - 834 5.8e-103 332.0 236.1 8 25 3.5e-08 3.9e-05 23.9 2.6 1 23 330 352 330 352 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF808-206 - 834 5.8e-103 332.0 236.1 9 25 2.4e-09 2.7e-06 27.5 1.2 1 23 358 380 358 380 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF808-206 - 834 5.8e-103 332.0 236.1 10 25 6.2e-06 0.007 16.8 2.8 1 23 386 408 386 408 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF808-206 - 834 5.8e-103 332.0 236.1 11 25 4.2e-05 0.047 14.2 6.2 1 23 414 436 414 436 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF808-206 - 834 5.8e-103 332.0 236.1 12 25 8.3e-06 0.0093 16.4 3.6 1 23 442 464 442 464 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF808-206 - 834 5.8e-103 332.0 236.1 13 25 4.5e-07 0.00051 20.4 0.5 1 23 470 492 470 492 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF808-206 - 834 5.8e-103 332.0 236.1 14 25 2.1e-09 2.4e-06 27.7 3.1 1 23 498 520 498 520 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF808-206 - 834 5.8e-103 332.0 236.1 15 25 1.9e-07 0.00021 21.6 0.2 1 23 526 548 526 548 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF808-206 - 834 5.8e-103 332.0 236.1 16 25 3.9e-06 0.0044 17.4 0.4 1 23 554 576 554 576 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF808-206 - 834 5.8e-103 332.0 236.1 17 25 4.5e-09 5e-06 26.7 1.6 1 23 582 604 582 604 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF808-206 - 834 5.8e-103 332.0 236.1 18 25 0.00018 0.2 12.2 2.7 1 23 610 632 610 632 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF808-206 - 834 5.8e-103 332.0 236.1 19 25 4.9e-06 0.0055 17.1 4.6 1 23 638 660 638 660 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF808-206 - 834 5.8e-103 332.0 236.1 20 25 9.1e-05 0.1 13.1 4.5 1 23 666 688 666 688 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF808-206 - 834 5.8e-103 332.0 236.1 21 25 9e-08 0.0001 22.6 3.0 1 23 694 716 694 716 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF808-206 - 834 5.8e-103 332.0 236.1 22 25 2e-09 2.3e-06 27.8 0.5 1 23 722 744 722 744 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF808-206 - 834 5.8e-103 332.0 236.1 23 25 3e-08 3.4e-05 24.1 3.8 1 23 750 772 750 772 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF808-206 - 834 5.8e-103 332.0 236.1 24 25 1.7e-08 2e-05 24.8 2.7 1 23 778 800 778 800 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF808-206 - 834 5.8e-103 332.0 236.1 25 25 1.5e-08 1.7e-05 25.0 0.7 1 23 806 828 806 828 0.98 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZNF808-206 - 834 1.8e-54 177.6 219.3 1 24 0.17 1.9e+02 3.3 0.2 2 23 163 184 162 185 0.77 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF808-206 - 834 1.8e-54 177.6 219.3 2 24 0.16 1.8e+02 3.4 6.8 1 20 190 209 190 212 0.78 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF808-206 - 834 1.8e-54 177.6 219.3 3 24 0.00037 0.41 11.6 6.4 1 23 218 240 218 241 0.90 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF808-206 - 834 1.8e-54 177.6 219.3 4 24 7.2e-05 0.081 13.8 0.2 1 23 246 268 246 269 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF808-206 - 834 1.8e-54 177.6 219.3 5 24 9.5e-06 0.011 16.5 2.0 1 23 274 296 274 297 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF808-206 - 834 1.8e-54 177.6 219.3 6 24 0.00017 0.19 12.6 3.3 1 23 302 324 302 325 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF808-206 - 834 1.8e-54 177.6 219.3 7 24 0.00033 0.37 11.8 1.9 1 23 330 352 330 353 0.87 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF808-206 - 834 1.8e-54 177.6 219.3 8 24 2.8e-06 0.0031 18.2 1.1 1 23 358 380 358 381 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF808-206 - 834 1.8e-54 177.6 219.3 9 24 1.6e-05 0.018 15.9 2.1 1 23 386 408 386 409 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF808-206 - 834 1.8e-54 177.6 219.3 10 24 0.00019 0.21 12.5 5.0 1 23 414 436 414 437 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF808-206 - 834 1.8e-54 177.6 219.3 11 24 0.00067 0.75 10.8 2.2 1 23 442 464 442 465 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF808-206 - 834 1.8e-54 177.6 219.3 12 24 0.00018 0.2 12.6 0.4 1 23 470 492 470 493 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF808-206 - 834 1.8e-54 177.6 219.3 13 24 9.9e-06 0.011 16.5 2.2 1 23 498 520 498 521 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF808-206 - 834 1.8e-54 177.6 219.3 14 24 8e-05 0.089 13.7 0.3 1 23 526 548 526 549 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF808-206 - 834 1.8e-54 177.6 219.3 15 24 0.0029 3.2 8.8 0.3 1 23 554 576 554 577 0.91 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF808-206 - 834 1.8e-54 177.6 219.3 16 24 0.00023 0.25 12.3 0.9 1 23 582 604 582 605 0.84 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF808-206 - 834 1.8e-54 177.6 219.3 17 24 0.00087 0.98 10.4 2.6 1 23 610 632 610 633 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF808-206 - 834 1.8e-54 177.6 219.3 18 24 6.8e-05 0.076 13.9 3.8 1 23 638 660 638 661 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF808-206 - 834 1.8e-54 177.6 219.3 19 24 6.6e-05 0.073 13.9 4.2 1 23 666 688 666 689 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF808-206 - 834 1.8e-54 177.6 219.3 20 24 0.00096 1.1 10.3 2.1 1 23 694 716 694 717 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF808-206 - 834 1.8e-54 177.6 219.3 21 24 1.2e-05 0.013 16.2 0.4 1 23 722 744 722 745 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF808-206 - 834 1.8e-54 177.6 219.3 22 24 2.9e-05 0.032 15.1 2.8 1 23 750 772 750 773 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF808-206 - 834 1.8e-54 177.6 219.3 23 24 5.9e-06 0.0066 17.2 2.0 1 23 778 800 778 801 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF808-206 - 834 1.8e-54 177.6 219.3 24 24 5.9e-06 0.0066 17.2 0.3 1 23 806 828 806 829 0.95 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF808-206 - 834 1.7e-19 69.3 208.3 1 24 0.00072 0.81 9.8 7.1 2 24 190 212 189 215 0.95 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF808-206 - 834 1.7e-19 69.3 208.3 2 24 0.0017 1.9 8.6 7.0 2 20 218 236 218 241 0.84 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF808-206 - 834 1.7e-19 69.3 208.3 3 24 6.2e-05 0.069 13.2 0.2 2 24 246 268 246 271 0.86 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF808-206 - 834 1.7e-19 69.3 208.3 4 24 0.0015 1.7 8.7 1.3 2 14 274 286 274 296 0.81 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF808-206 - 834 1.7e-19 69.3 208.3 5 24 0.012 14 5.9 0.8 2 11 302 311 302 312 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF808-206 - 834 1.7e-19 69.3 208.3 6 24 0.00037 0.41 10.7 1.7 2 20 330 348 329 352 0.86 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF808-206 - 834 1.7e-19 69.3 208.3 7 24 0.0012 1.4 9.0 0.9 2 24 358 380 358 383 0.81 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF808-206 - 834 1.7e-19 69.3 208.3 8 24 0.45 5e+02 0.9 3.0 2 11 386 395 386 397 0.87 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF808-206 - 834 1.7e-19 69.3 208.3 9 24 0.0021 2.3 8.3 3.2 2 24 414 436 413 439 0.85 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF808-206 - 834 1.7e-19 69.3 208.3 10 24 0.0038 4.3 7.5 1.0 2 12 442 452 442 464 0.77 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF808-206 - 834 1.7e-19 69.3 208.3 11 24 0.00021 0.23 11.5 0.2 2 11 470 479 469 493 0.88 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF808-206 - 834 1.7e-19 69.3 208.3 12 24 0.00069 0.77 9.8 2.3 2 24 498 520 498 523 0.87 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF808-206 - 834 1.7e-19 69.3 208.3 13 24 0.00025 0.27 11.3 0.6 2 24 526 548 526 551 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF808-206 - 834 1.7e-19 69.3 208.3 14 24 0.087 97 3.1 0.3 2 11 554 563 554 564 0.86 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF808-206 - 834 1.7e-19 69.3 208.3 15 24 8.8e-07 0.00098 19.1 1.4 2 24 582 604 581 606 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF808-206 - 834 1.7e-19 69.3 208.3 16 24 0.0098 11 6.1 2.8 2 11 610 619 609 625 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF808-206 - 834 1.7e-19 69.3 208.3 17 24 0.00075 0.84 9.7 2.4 2 22 638 658 638 663 0.76 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF808-206 - 834 1.7e-19 69.3 208.3 18 24 0.00088 0.99 9.5 2.3 2 12 666 676 666 677 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF808-206 - 834 1.7e-19 69.3 208.3 19 24 8.3 9.3e+03 -3.2 0.0 7 14 683 690 682 690 0.78 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF808-206 - 834 1.7e-19 69.3 208.3 20 24 0.034 38 4.4 0.9 2 24 694 716 694 719 0.82 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF808-206 - 834 1.7e-19 69.3 208.3 21 24 0.0022 2.4 8.2 0.7 2 12 722 732 721 733 0.90 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF808-206 - 834 1.7e-19 69.3 208.3 22 24 0.042 47 4.1 5.6 2 13 750 761 750 771 0.82 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF808-206 - 834 1.7e-19 69.3 208.3 23 24 0.65 7.2e+02 0.3 4.7 2 13 778 789 778 799 0.84 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF808-206 - 834 1.7e-19 69.3 208.3 24 24 0.0024 2.7 8.1 0.6 2 12 806 816 806 817 0.94 C2H2-type zinc finger zf-met PF12874.7 25 ZNF808-206 - 834 1e-16 60.7 167.1 1 21 0.00047 0.53 10.8 1.6 1 19 190 208 190 210 0.94 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF808-206 - 834 1e-16 60.7 167.1 2 21 0.12 1.3e+02 3.2 3.2 1 19 218 236 218 236 0.93 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF808-206 - 834 1e-16 60.7 167.1 3 21 0.24 2.7e+02 2.2 0.3 1 20 246 265 246 269 0.87 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF808-206 - 834 1e-16 60.7 167.1 4 21 0.021 24 5.5 1.2 1 20 274 293 274 294 0.93 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF808-206 - 834 1e-16 60.7 167.1 5 21 0.0014 1.6 9.2 3.6 1 21 302 322 302 324 0.93 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF808-206 - 834 1e-16 60.7 167.1 6 21 0.0059 6.6 7.3 0.9 1 19 330 348 330 348 0.95 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF808-206 - 834 1e-16 60.7 167.1 7 21 0.00018 0.2 12.1 0.7 1 21 358 378 358 381 0.91 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF808-206 - 834 1e-16 60.7 167.1 8 21 8e-05 0.09 13.2 1.5 1 20 386 405 386 409 0.91 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF808-206 - 834 1e-16 60.7 167.1 9 21 0.00079 0.88 10.0 1.2 1 19 414 432 414 434 0.94 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF808-206 - 834 1e-16 60.7 167.1 10 21 6.4e-05 0.072 13.5 0.4 1 21 470 490 470 493 0.91 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF808-206 - 834 1e-16 60.7 167.1 11 21 0.028 31 5.1 0.7 1 19 498 516 498 518 0.94 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF808-206 - 834 1e-16 60.7 167.1 12 21 2.6e-05 0.029 14.8 0.4 1 21 526 546 526 549 0.91 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF808-206 - 834 1e-16 60.7 167.1 13 21 0.004 4.4 7.8 0.3 1 21 554 574 554 577 0.90 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF808-206 - 834 1e-16 60.7 167.1 14 21 0.18 2e+02 2.6 0.7 1 16 582 597 582 598 0.88 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF808-206 - 834 1e-16 60.7 167.1 15 21 0.0026 2.9 8.4 1.9 1 21 610 630 610 632 0.91 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF808-206 - 834 1e-16 60.7 167.1 16 21 0.0068 7.6 7.1 3.1 1 19 638 656 638 660 0.92 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF808-206 - 834 1e-16 60.7 167.1 17 21 0.02 22 5.6 2.0 1 19 666 684 666 686 0.94 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF808-206 - 834 1e-16 60.7 167.1 18 21 0.0012 1.3 9.5 0.2 1 21 722 742 722 745 0.91 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF808-206 - 834 1e-16 60.7 167.1 19 21 0.31 3.4e+02 1.8 1.3 1 19 750 768 750 770 0.94 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF808-206 - 834 1e-16 60.7 167.1 20 21 6.9e-06 0.0077 16.6 0.6 1 19 778 796 778 797 0.96 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF808-206 - 834 1e-16 60.7 167.1 21 21 0.11 1.3e+02 3.2 0.2 1 19 806 824 806 827 0.88 Zinc-finger of C2H2 type Zn-ribbon_8 PF09723.10 40 ZNF808-206 - 834 2.3e-16 59.6 133.1 1 22 0.076 85 3.4 9.1 5 34 189 225 189 228 0.74 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF808-206 - 834 2.3e-16 59.6 133.1 2 22 0.0086 9.7 6.4 1.4 6 16 218 228 217 238 0.86 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF808-206 - 834 2.3e-16 59.6 133.1 3 22 7.8e-06 0.0088 16.1 2.9 6 35 246 282 245 286 0.89 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF808-206 - 834 2.3e-16 59.6 133.1 4 22 0.002 2.3 8.4 3.9 6 34 274 309 273 314 0.83 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF808-206 - 834 2.3e-16 59.6 133.1 5 22 0.0015 1.7 8.8 0.2 6 19 330 343 327 350 0.82 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF808-206 - 834 2.3e-16 59.6 133.1 6 22 0.0024 2.7 8.2 4.8 6 34 358 393 357 396 0.82 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF808-206 - 834 2.3e-16 59.6 133.1 7 22 0.0035 3.9 7.7 5.4 6 38 386 425 385 427 0.88 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF808-206 - 834 2.3e-16 59.6 133.1 8 22 0.0096 11 6.3 0.7 6 19 414 427 412 433 0.86 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF808-206 - 834 2.3e-16 59.6 133.1 9 22 0.0024 2.7 8.2 0.2 6 19 442 455 441 462 0.87 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF808-206 - 834 2.3e-16 59.6 133.1 10 22 0.00013 0.15 12.2 1.5 6 35 470 506 469 510 0.85 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF808-206 - 834 2.3e-16 59.6 133.1 11 22 0.0029 3.2 7.9 0.4 6 18 498 510 497 520 0.81 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF808-206 - 834 2.3e-16 59.6 133.1 12 22 0.02 22 5.3 4.1 6 33 526 560 525 564 0.76 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF808-206 - 834 2.3e-16 59.6 133.1 13 22 0.00042 0.47 10.6 2.9 6 34 554 589 553 592 0.86 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF808-206 - 834 2.3e-16 59.6 133.1 14 22 0.0053 5.9 7.1 5.3 6 34 582 617 580 622 0.78 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF808-206 - 834 2.3e-16 59.6 133.1 15 22 0.24 2.7e+02 1.8 0.8 6 15 610 619 608 629 0.89 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF808-206 - 834 2.3e-16 59.6 133.1 16 22 0.022 24 5.1 6.4 6 35 638 674 637 679 0.77 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF808-206 - 834 2.3e-16 59.6 133.1 17 22 0.049 55 4.0 0.7 6 16 666 676 665 685 0.87 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF808-206 - 834 2.3e-16 59.6 133.1 18 22 0.00082 0.92 9.7 1.9 6 34 694 729 693 734 0.63 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF808-206 - 834 2.3e-16 59.6 133.1 19 22 0.0025 2.8 8.1 3.7 6 35 722 758 720 762 0.82 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF808-206 - 834 2.3e-16 59.6 133.1 20 22 0.0029 3.2 7.9 0.6 6 19 750 763 749 772 0.81 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF808-206 - 834 2.3e-16 59.6 133.1 21 22 6.1e-05 0.069 13.3 3.4 6 35 778 814 777 819 0.88 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF808-206 - 834 2.3e-16 59.6 133.1 22 22 0.0049 5.5 7.2 0.3 6 17 806 817 804 825 0.85 Zinc ribbon domain BolA PF01722.18 76 ZNF808-206 - 834 6.5e-16 58.4 47.3 1 17 2.2 2.5e+03 -1.2 0.0 46 72 21 49 18 52 0.74 BolA-like protein BolA PF01722.18 76 ZNF808-206 - 834 6.5e-16 58.4 47.3 2 17 0.068 77 3.7 0.1 19 51 180 210 158 241 0.87 BolA-like protein BolA PF01722.18 76 ZNF808-206 - 834 6.5e-16 58.4 47.3 3 17 0.03 33 4.8 0.1 21 53 264 296 253 302 0.81 BolA-like protein BolA PF01722.18 76 ZNF808-206 - 834 6.5e-16 58.4 47.3 4 17 0.048 53 4.2 0.8 15 53 286 324 283 326 0.85 BolA-like protein BolA PF01722.18 76 ZNF808-206 - 834 6.5e-16 58.4 47.3 5 17 0.014 16 5.9 0.5 18 52 317 351 312 353 0.82 BolA-like protein BolA PF01722.18 76 ZNF808-206 - 834 6.5e-16 58.4 47.3 6 17 0.0067 7.6 6.9 0.3 21 53 348 380 343 382 0.83 BolA-like protein BolA PF01722.18 76 ZNF808-206 - 834 6.5e-16 58.4 47.3 7 17 2.8e-05 0.031 14.5 0.1 20 53 375 408 368 412 0.83 BolA-like protein BolA PF01722.18 76 ZNF808-206 - 834 6.5e-16 58.4 47.3 8 17 0.28 3.1e+02 1.7 0.2 25 55 464 494 452 498 0.84 BolA-like protein BolA PF01722.18 76 ZNF808-206 - 834 6.5e-16 58.4 47.3 9 17 0.12 1.3e+02 2.9 0.8 27 52 494 519 486 522 0.78 BolA-like protein BolA PF01722.18 76 ZNF808-206 - 834 6.5e-16 58.4 47.3 10 17 0.05 56 4.1 1.4 14 53 509 548 506 549 0.86 BolA-like protein BolA PF01722.18 76 ZNF808-206 - 834 6.5e-16 58.4 47.3 11 17 0.00063 0.71 10.2 0.0 16 53 543 576 536 578 0.81 BolA-like protein BolA PF01722.18 76 ZNF808-206 - 834 6.5e-16 58.4 47.3 12 17 0.0036 4 7.8 0.0 24 56 603 635 591 642 0.85 BolA-like protein BolA PF01722.18 76 ZNF808-206 - 834 6.5e-16 58.4 47.3 13 17 0.5 5.6e+02 0.9 0.1 30 53 637 660 630 662 0.85 BolA-like protein BolA PF01722.18 76 ZNF808-206 - 834 6.5e-16 58.4 47.3 14 17 0.13 1.5e+02 2.8 0.1 14 52 649 687 644 690 0.80 BolA-like protein BolA PF01722.18 76 ZNF808-206 - 834 6.5e-16 58.4 47.3 15 17 0.0016 1.7 8.9 0.1 25 54 716 745 704 749 0.84 BolA-like protein BolA PF01722.18 76 ZNF808-206 - 834 6.5e-16 58.4 47.3 16 17 2e-05 0.022 15.0 2.0 14 53 761 800 758 802 0.91 BolA-like protein BolA PF01722.18 76 ZNF808-206 - 834 6.5e-16 58.4 47.3 17 17 2.4 2.7e+03 -1.3 0.0 26 54 801 829 798 830 0.84 BolA-like protein zf-C2H2_jaz PF12171.8 27 ZNF808-206 - 834 6.1e-14 51.9 127.0 1 21 0.15 1.7e+02 2.7 2.3 1 15 189 203 189 210 0.86 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF808-206 - 834 6.1e-14 51.9 127.0 2 21 0.05 56 4.2 0.3 2 12 218 228 217 234 0.89 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF808-206 - 834 6.1e-14 51.9 127.0 3 21 0.08 90 3.5 0.1 2 20 246 264 245 266 0.87 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF808-206 - 834 6.1e-14 51.9 127.0 4 21 0.032 36 4.8 0.7 2 22 274 294 273 294 0.91 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF808-206 - 834 6.1e-14 51.9 127.0 5 21 0.034 38 4.7 2.4 2 20 302 320 301 322 0.85 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF808-206 - 834 6.1e-14 51.9 127.0 6 21 0.0094 11 6.5 0.8 2 20 330 348 329 348 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF808-206 - 834 6.1e-14 51.9 127.0 7 21 3.6e-05 0.041 14.2 0.3 2 22 358 378 357 378 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF808-206 - 834 6.1e-14 51.9 127.0 8 21 0.14 1.6e+02 2.7 0.5 2 20 386 404 385 406 0.78 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF808-206 - 834 6.1e-14 51.9 127.0 9 21 0.014 16 6.0 0.7 2 18 414 430 413 434 0.84 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF808-206 - 834 6.1e-14 51.9 127.0 10 21 0.0038 4.3 7.7 0.1 2 20 470 488 469 490 0.84 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF808-206 - 834 6.1e-14 51.9 127.0 11 21 0.038 43 4.6 0.4 2 21 498 517 497 518 0.90 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF808-206 - 834 6.1e-14 51.9 127.0 12 21 4.7e-05 0.053 13.8 0.1 2 22 526 546 525 546 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF808-206 - 834 6.1e-14 51.9 127.0 13 21 0.17 1.9e+02 2.5 0.0 2 20 554 572 553 574 0.75 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF808-206 - 834 6.1e-14 51.9 127.0 14 21 0.18 2e+02 2.4 0.2 2 12 582 592 581 601 0.87 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF808-206 - 834 6.1e-14 51.9 127.0 15 21 0.028 32 5.0 1.2 2 11 610 619 609 620 0.89 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF808-206 - 834 6.1e-14 51.9 127.0 16 21 0.0014 1.6 9.1 0.8 2 20 638 656 637 658 0.86 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF808-206 - 834 6.1e-14 51.9 127.0 17 21 0.027 30 5.0 0.7 2 12 666 676 665 686 0.82 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF808-206 - 834 6.1e-14 51.9 127.0 18 21 0.00078 0.87 9.9 0.2 2 22 722 742 721 742 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF808-206 - 834 6.1e-14 51.9 127.0 19 21 0.023 26 5.2 0.5 2 20 750 768 749 768 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF808-206 - 834 6.1e-14 51.9 127.0 20 21 2.3e-05 0.025 14.8 0.4 2 20 778 796 777 797 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF808-206 - 834 6.1e-14 51.9 127.0 21 21 0.035 39 4.7 0.2 2 20 806 824 805 826 0.87 Zinc-finger double-stranded RNA-binding zf-C2H2_11 PF16622.5 29 ZNF808-206 - 834 1.6e-09 37.4 143.1 1 23 8.8 9.8e+03 -3.6 0.2 7 23 164 180 160 182 0.75 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF808-206 - 834 1.6e-09 37.4 143.1 2 23 0.01 12 5.8 3.0 5 25 218 238 215 240 0.89 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF808-206 - 834 1.6e-09 37.4 143.1 3 23 0.31 3.5e+02 1.1 0.0 5 14 246 255 245 267 0.82 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF808-206 - 834 1.6e-09 37.4 143.1 4 23 0.0003 0.33 10.7 0.7 5 25 274 294 271 296 0.91 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF808-206 - 834 1.6e-09 37.4 143.1 5 23 0.82 9.2e+02 -0.3 0.9 5 26 302 323 301 324 0.87 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF808-206 - 834 1.6e-09 37.4 143.1 6 23 1.2e-05 0.014 15.2 1.0 3 24 328 349 327 352 0.90 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF808-206 - 834 1.6e-09 37.4 143.1 7 23 0.0022 2.5 7.9 0.0 5 26 358 379 355 380 0.93 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF808-206 - 834 1.6e-09 37.4 143.1 8 23 0.00073 0.82 9.5 0.4 5 26 386 407 383 408 0.92 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF808-206 - 834 1.6e-09 37.4 143.1 9 23 0.079 89 3.0 4.3 3 25 412 434 411 436 0.91 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF808-206 - 834 1.6e-09 37.4 143.1 10 23 0.021 24 4.8 0.5 5 25 442 462 439 464 0.89 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF808-206 - 834 1.6e-09 37.4 143.1 11 23 1.4 1.6e+03 -1.0 0.0 3 12 468 477 467 491 0.74 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF808-206 - 834 1.6e-09 37.4 143.1 12 23 7.7e-05 0.086 12.6 1.1 5 25 498 518 496 520 0.93 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF808-206 - 834 1.6e-09 37.4 143.1 13 23 3 3.4e+03 -2.1 0.0 5 26 526 547 525 548 0.82 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF808-206 - 834 1.6e-09 37.4 143.1 14 23 0.0028 3.1 7.6 0.0 5 26 554 575 551 576 0.94 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF808-206 - 834 1.6e-09 37.4 143.1 15 23 8.1e-05 0.091 12.5 0.2 3 25 580 602 579 604 0.92 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF808-206 - 834 1.6e-09 37.4 143.1 16 23 2.4 2.7e+03 -1.8 0.3 4 11 609 616 607 631 0.67 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF808-206 - 834 1.6e-09 37.4 143.1 17 23 0.023 25 4.7 2.0 5 26 638 659 637 660 0.95 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF808-206 - 834 1.6e-09 37.4 143.1 18 23 0.83 9.3e+02 -0.3 2.0 5 25 666 686 663 688 0.86 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF808-206 - 834 1.6e-09 37.4 143.1 19 23 0.12 1.3e+02 2.4 0.2 5 25 694 714 691 716 0.83 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF808-206 - 834 1.6e-09 37.4 143.1 20 23 0.019 22 4.9 0.1 3 26 720 743 719 744 0.93 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF808-206 - 834 1.6e-09 37.4 143.1 21 23 6.4e-05 0.072 12.9 0.3 5 26 750 771 747 772 0.94 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF808-206 - 834 1.6e-09 37.4 143.1 22 23 0.0014 1.5 8.6 0.2 5 26 778 799 775 800 0.93 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF808-206 - 834 1.6e-09 37.4 143.1 23 23 0.019 21 5.0 0.1 5 24 806 825 803 828 0.81 zinc-finger C2H2-type C1_1 PF00130.22 53 ZNF808-206 - 834 8.7e-08 31.9 120.5 1 20 0.046 51 3.9 6.4 9 39 187 212 164 216 0.64 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF808-206 - 834 8.7e-08 31.9 120.5 2 20 0.21 2.4e+02 1.7 8.5 9 37 215 254 210 256 0.80 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF808-206 - 834 8.7e-08 31.9 120.5 3 20 0.0045 5.1 7.1 2.0 9 38 243 283 236 290 0.81 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF808-206 - 834 8.7e-08 31.9 120.5 4 20 0.029 32 4.5 4.6 5 37 268 310 264 316 0.77 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF808-206 - 834 8.7e-08 31.9 120.5 5 20 0.023 26 4.8 3.9 10 38 300 339 292 343 0.84 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF808-206 - 834 8.7e-08 31.9 120.5 6 20 0.0012 1.4 8.9 2.0 1 35 348 392 348 395 0.86 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF808-206 - 834 8.7e-08 31.9 120.5 7 20 0.0078 8.8 6.3 5.8 6 50 381 439 375 441 0.85 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF808-206 - 834 8.7e-08 31.9 120.5 8 20 0.031 35 4.4 4.7 9 38 411 451 402 454 0.80 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF808-206 - 834 8.7e-08 31.9 120.5 9 20 0.0043 4.8 7.1 1.6 9 37 439 478 435 479 0.83 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF808-206 - 834 8.7e-08 31.9 120.5 10 20 0.0019 2.2 8.3 1.8 6 38 464 507 459 512 0.84 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF808-206 - 834 8.7e-08 31.9 120.5 11 20 0.00033 0.37 10.7 0.8 6 38 492 535 488 538 0.84 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF808-206 - 834 8.7e-08 31.9 120.5 12 20 0.0025 2.8 7.9 0.3 9 36 523 561 512 564 0.81 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF808-206 - 834 8.7e-08 31.9 120.5 13 20 0.0077 8.7 6.3 1.0 9 37 551 590 543 594 0.82 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF808-206 - 834 8.7e-08 31.9 120.5 14 20 0.0019 2.2 8.3 1.7 9 36 579 617 571 620 0.82 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF808-206 - 834 8.7e-08 31.9 120.5 15 20 0.0015 1.7 8.6 5.1 10 50 608 663 598 665 0.86 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF808-206 - 834 8.7e-08 31.9 120.5 16 20 0.0085 9.6 6.2 7.3 9 50 635 691 627 693 0.87 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF808-206 - 834 8.7e-08 31.9 120.5 17 20 0.042 47 4.0 3.6 10 36 664 701 660 703 0.73 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF808-206 - 834 8.7e-08 31.9 120.5 18 20 0.002 2.3 8.2 0.2 9 36 691 729 684 732 0.85 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF808-206 - 834 8.7e-08 31.9 120.5 19 20 0.00042 0.48 10.4 1.4 2 37 740 786 740 790 0.84 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF808-206 - 834 8.7e-08 31.9 120.5 20 20 0.014 16 5.5 0.8 1 22 796 816 796 828 0.77 Phorbol esters/diacylglycerol binding domain (C1 domain) # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF808-206.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF808-206.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF808-206.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF808-206.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF808-206.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:14:55 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF81-201.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF81-201.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF81-201.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF81-201.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF81-201.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:14:55 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZNF81-202 - 661 3.8e-82 267.3 80.0 1 14 0.84 4.6e+02 1.5 1.0 2 22 233 253 232 255 0.73 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF81-202 - 661 3.8e-82 267.3 80.0 2 14 0.027 15 6.2 0.4 6 20 293 307 286 313 0.69 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF81-202 - 661 3.8e-82 267.3 80.0 3 14 0.00096 0.52 10.8 0.1 6 24 321 339 321 341 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF81-202 - 661 3.8e-82 267.3 80.0 4 14 2.3e-08 1.2e-05 25.5 1.8 2 24 345 367 344 369 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF81-202 - 661 3.8e-82 267.3 80.0 5 14 3.3e-09 1.8e-06 28.1 0.3 2 25 373 396 372 396 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF81-202 - 661 3.8e-82 267.3 80.0 6 14 3.3e-09 1.8e-06 28.1 1.3 1 25 400 424 400 425 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF81-202 - 661 3.8e-82 267.3 80.0 7 14 2.8e-06 0.0015 18.9 0.0 2 24 429 451 428 453 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF81-202 - 661 3.8e-82 267.3 80.0 8 14 6.6e-11 3.6e-08 33.5 0.5 1 24 456 479 456 481 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF81-202 - 661 3.8e-82 267.3 80.0 9 14 1.2e-09 6.7e-07 29.5 0.3 2 26 485 509 484 509 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF81-202 - 661 3.8e-82 267.3 80.0 10 14 4.4e-08 2.4e-05 24.6 0.2 1 25 512 536 512 537 0.97 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF81-202 - 661 3.8e-82 267.3 80.0 11 14 1.9e-08 1e-05 25.7 0.1 1 24 540 563 540 565 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF81-202 - 661 3.8e-82 267.3 80.0 12 14 1.9e-09 1e-06 28.9 1.4 2 25 569 592 568 593 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF81-202 - 661 3.8e-82 267.3 80.0 13 14 6.5e-09 3.5e-06 27.2 0.4 1 25 596 620 596 621 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF81-202 - 661 3.8e-82 267.3 80.0 14 14 7.7e-10 4.2e-07 30.1 0.7 1 25 624 648 624 649 0.95 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZNF81-202 - 661 6.3e-70 227.9 97.1 1 16 1.5 8.2e+02 0.8 0.4 7 19 196 208 196 211 0.87 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF81-202 - 661 6.3e-70 227.9 97.1 2 16 0.048 26 5.5 0.5 7 23 224 240 224 240 0.94 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF81-202 - 661 6.3e-70 227.9 97.1 3 16 3.5 1.9e+03 -0.4 0.2 3 16 246 261 245 263 0.79 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF81-202 - 661 6.3e-70 227.9 97.1 4 16 3.4 1.8e+03 -0.3 0.1 7 16 280 289 274 291 0.76 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF81-202 - 661 6.3e-70 227.9 97.1 5 16 6.3e-07 0.00034 20.9 0.2 1 23 330 352 330 352 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF81-202 - 661 6.3e-70 227.9 97.1 6 16 1.9e-07 0.00011 22.5 1.6 1 23 358 380 358 380 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF81-202 - 661 6.3e-70 227.9 97.1 7 16 1.7e-06 0.00094 19.5 0.1 1 23 386 408 386 408 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF81-202 - 661 6.3e-70 227.9 97.1 8 16 4.9e-08 2.7e-05 24.4 2.7 1 23 414 436 414 436 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF81-202 - 661 6.3e-70 227.9 97.1 9 16 3.6e-07 0.0002 21.7 0.2 1 23 442 464 442 464 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF81-202 - 661 6.3e-70 227.9 97.1 10 16 3.8e-09 2.1e-06 27.9 0.8 1 23 470 492 470 492 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF81-202 - 661 6.3e-70 227.9 97.1 11 16 7.6e-09 4.1e-06 26.9 0.8 1 23 498 520 498 520 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF81-202 - 661 6.3e-70 227.9 97.1 12 16 1.2e-07 6.6e-05 23.1 0.3 1 23 526 548 526 548 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF81-202 - 661 6.3e-70 227.9 97.1 13 16 1.8e-08 9.8e-06 25.8 0.1 1 23 554 576 554 576 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF81-202 - 661 6.3e-70 227.9 97.1 14 16 7.5e-09 4.1e-06 27.0 2.6 1 23 582 604 582 604 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF81-202 - 661 6.3e-70 227.9 97.1 15 16 1.2e-07 6.6e-05 23.1 0.3 1 23 610 632 610 632 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF81-202 - 661 6.3e-70 227.9 97.1 16 16 7.8e-07 0.00042 20.6 0.7 1 23 638 660 638 660 0.98 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZNF81-202 - 661 1.3e-38 128.3 85.0 1 14 0.39 2.1e+02 3.2 0.6 7 23 224 240 222 241 0.90 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF81-202 - 661 1.3e-38 128.3 85.0 2 14 9.8 5.3e+03 -1.2 0.1 5 17 250 262 246 263 0.79 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF81-202 - 661 1.3e-38 128.3 85.0 3 14 0.00015 0.083 13.8 0.2 1 23 330 352 330 353 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF81-202 - 661 1.3e-38 128.3 85.0 4 14 8e-06 0.0044 17.8 1.4 1 23 358 380 358 381 0.97 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF81-202 - 661 1.3e-38 128.3 85.0 5 14 8.4e-05 0.045 14.6 0.1 1 23 386 408 386 409 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF81-202 - 661 1.3e-38 128.3 85.0 6 14 9.1e-05 0.049 14.5 1.9 1 23 414 436 414 437 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF81-202 - 661 1.3e-38 128.3 85.0 7 14 0.0001 0.056 14.3 0.2 1 23 442 464 442 465 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF81-202 - 661 1.3e-38 128.3 85.0 8 14 2.6e-06 0.0014 19.3 0.7 1 23 470 492 470 493 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF81-202 - 661 1.3e-38 128.3 85.0 9 14 2.8e-06 0.0015 19.2 0.5 1 23 498 520 498 521 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF81-202 - 661 1.3e-38 128.3 85.0 10 14 0.00037 0.2 12.6 0.2 1 23 526 548 526 549 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF81-202 - 661 1.3e-38 128.3 85.0 11 14 0.00066 0.36 11.8 0.1 1 23 554 576 554 577 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF81-202 - 661 1.3e-38 128.3 85.0 12 14 1.4e-05 0.0075 17.0 2.2 1 23 582 604 582 605 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF81-202 - 661 1.3e-38 128.3 85.0 13 14 0.00037 0.2 12.6 0.2 1 23 610 632 610 633 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF81-202 - 661 1.3e-38 128.3 85.0 14 14 0.00025 0.13 13.1 0.5 1 23 638 660 638 661 0.84 C2H2-type zinc finger KRAB PF01352.27 42 ZNF81-202 - 661 1.5e-23 82.2 1.2 1 1 5e-26 2.7e-23 81.3 1.2 1 42 20 61 20 61 0.99 KRAB box zf-C2H2_6 PF13912.6 27 ZNF81-202 - 661 3e-16 59.0 70.4 1 12 0.00054 0.29 11.2 0.2 2 25 330 353 329 355 0.92 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF81-202 - 661 3e-16 59.0 70.4 2 12 0.0013 0.68 10.0 0.8 2 11 358 367 358 382 0.82 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF81-202 - 661 3e-16 59.0 70.4 3 12 0.00044 0.24 11.5 0.3 2 22 386 406 385 410 0.80 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF81-202 - 661 3e-16 59.0 70.4 4 12 0.00046 0.25 11.4 1.9 1 20 413 432 413 438 0.79 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF81-202 - 661 3e-16 59.0 70.4 5 12 0.13 72 3.6 0.1 2 11 442 451 441 452 0.88 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF81-202 - 661 3e-16 59.0 70.4 6 12 1.1e-05 0.0059 16.6 0.7 2 24 470 492 470 495 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF81-202 - 661 3e-16 59.0 70.4 7 12 4.5e-06 0.0024 17.8 0.7 2 24 498 520 498 523 0.95 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF81-202 - 661 3e-16 59.0 70.4 8 12 0.014 7.5 6.7 0.1 2 11 526 535 525 537 0.91 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF81-202 - 661 3e-16 59.0 70.4 9 12 3.3 1.8e+03 -0.9 0.1 2 11 554 563 554 576 0.71 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF81-202 - 661 3e-16 59.0 70.4 10 12 0.14 74 3.5 1.7 2 12 582 592 582 593 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF81-202 - 661 3e-16 59.0 70.4 11 12 0.021 11 6.1 0.1 2 11 610 619 610 621 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF81-202 - 661 3e-16 59.0 70.4 12 12 0.058 31 4.7 0.5 2 20 638 656 638 660 0.78 C2H2-type zinc finger zf_UBZ PF18439.1 32 ZNF81-202 - 661 5.5e-14 51.5 43.4 1 12 0.011 6.1 6.5 0.1 3 17 330 345 328 349 0.78 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF81-202 - 661 5.5e-14 51.5 43.4 2 12 0.044 24 4.6 0.1 3 12 358 367 356 377 0.80 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF81-202 - 661 5.5e-14 51.5 43.4 3 12 0.014 7.5 6.2 0.0 3 15 386 398 384 405 0.78 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF81-202 - 661 5.5e-14 51.5 43.4 4 12 0.037 20 4.9 0.2 2 13 413 424 412 433 0.81 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF81-202 - 661 5.5e-14 51.5 43.4 5 12 0.028 15 5.2 0.1 2 13 441 452 440 461 0.81 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF81-202 - 661 5.5e-14 51.5 43.4 6 12 0.00027 0.14 11.7 0.3 3 20 470 488 468 489 0.88 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF81-202 - 661 5.5e-14 51.5 43.4 7 12 0.021 12 5.6 0.1 3 20 498 516 496 517 0.75 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF81-202 - 661 5.5e-14 51.5 43.4 8 12 0.005 2.7 7.7 0.1 2 15 525 538 524 545 0.77 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF81-202 - 661 5.5e-14 51.5 43.4 9 12 0.011 6.2 6.5 0.1 3 21 554 573 552 573 0.83 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF81-202 - 661 5.5e-14 51.5 43.4 10 12 0.025 14 5.4 0.2 3 13 582 592 580 600 0.89 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF81-202 - 661 5.5e-14 51.5 43.4 11 12 0.012 6.5 6.4 0.1 3 15 610 622 608 629 0.77 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF81-202 - 661 5.5e-14 51.5 43.4 12 12 0.035 19 4.9 0.1 3 13 638 648 636 654 0.82 Ubiquitin-Binding Zinc Finger Zn-ribbon_8 PF09723.10 40 ZNF81-202 - 661 1e-13 51.1 52.7 1 11 0.0092 5 7.3 4.3 6 34 330 365 329 367 0.83 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF81-202 - 661 1e-13 51.1 52.7 2 11 0.0078 4.3 7.6 0.6 6 19 358 371 357 380 0.83 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF81-202 - 661 1e-13 51.1 52.7 3 11 0.0001 0.057 13.6 2.0 6 36 386 423 385 428 0.87 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF81-202 - 661 1e-13 51.1 52.7 4 11 0.00081 0.44 10.7 2.2 6 34 442 477 440 480 0.91 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF81-202 - 661 1e-13 51.1 52.7 5 11 0.00021 0.12 12.6 2.8 6 35 470 506 469 511 0.84 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF81-202 - 661 1e-13 51.1 52.7 6 11 0.00014 0.079 13.1 1.9 6 35 498 534 497 538 0.90 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF81-202 - 661 1e-13 51.1 52.7 7 11 8.7e-05 0.047 13.8 1.4 6 34 526 561 525 567 0.90 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF81-202 - 661 1e-13 51.1 52.7 8 11 0.00011 0.058 13.5 2.9 6 37 554 592 552 595 0.87 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF81-202 - 661 1e-13 51.1 52.7 9 11 7.6e-05 0.041 14.0 2.8 6 35 582 618 581 623 0.92 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF81-202 - 661 1e-13 51.1 52.7 10 11 0.0001 0.057 13.6 2.1 6 35 610 647 609 652 0.87 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF81-202 - 661 1e-13 51.1 52.7 11 11 0.007 3.8 7.7 0.2 6 16 638 648 637 658 0.80 Zinc ribbon domain zf-C2H2_jaz PF12171.8 27 ZNF81-202 - 661 1.4e-08 34.8 56.0 1 11 0.16 90 3.5 0.4 2 24 330 352 329 352 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF81-202 - 661 1.4e-08 34.8 56.0 2 11 0.078 42 4.6 0.5 2 23 358 379 357 380 0.90 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF81-202 - 661 1.4e-08 34.8 56.0 3 11 0.047 25 5.3 0.1 2 22 386 406 385 406 0.86 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF81-202 - 661 1.4e-08 34.8 56.0 4 11 0.12 65 4.0 0.8 2 22 414 434 413 434 0.91 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF81-202 - 661 1.4e-08 34.8 56.0 5 11 0.00039 0.21 11.9 0.1 2 22 470 490 469 490 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF81-202 - 661 1.4e-08 34.8 56.0 6 11 3.3e-05 0.018 15.3 0.4 2 24 498 520 497 520 0.95 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF81-202 - 661 1.4e-08 34.8 56.0 7 11 0.0064 3.5 8.0 0.4 2 21 526 545 525 546 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF81-202 - 661 1.4e-08 34.8 56.0 8 11 1.3 7e+02 0.7 0.0 2 22 554 574 553 574 0.89 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF81-202 - 661 1.4e-08 34.8 56.0 9 11 0.032 17 5.8 0.4 2 21 582 601 581 602 0.83 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF81-202 - 661 1.4e-08 34.8 56.0 10 11 0.0054 2.9 8.3 0.2 2 21 610 629 609 630 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF81-202 - 661 1.4e-08 34.8 56.0 11 11 0.37 2e+02 2.4 0.0 2 22 638 658 637 658 0.87 Zinc-finger double-stranded RNA-binding DZR PF12773.7 49 ZNF81-202 - 661 4.2e-08 33.1 50.1 1 3 0.5 2.7e+02 1.7 0.1 7 32 238 277 235 293 0.64 Double zinc ribbon DZR PF12773.7 49 ZNF81-202 - 661 4.2e-08 33.1 50.1 2 3 0.00085 0.46 10.5 0.3 11 37 328 366 321 373 0.85 Double zinc ribbon DZR PF12773.7 49 ZNF81-202 - 661 4.2e-08 33.1 50.1 3 3 0.01 5.5 7.1 14.3 1 49 416 504 376 504 0.90 Double zinc ribbon zf-C2H2_11 PF16622.5 29 ZNF81-202 - 661 7.6e-08 32.0 51.6 1 12 2 1.1e+03 -0.5 0.3 7 14 332 339 329 340 0.87 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF81-202 - 661 7.6e-08 32.0 51.6 2 12 0.018 10 6.0 0.2 5 23 358 376 355 379 0.92 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF81-202 - 661 7.6e-08 32.0 51.6 3 12 0.028 15 5.4 0.2 7 26 388 407 386 408 0.89 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF81-202 - 661 7.6e-08 32.0 51.6 4 12 0.0019 1 9.2 2.5 5 26 414 435 411 436 0.94 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF81-202 - 661 7.6e-08 32.0 51.6 5 12 0.3 1.6e+02 2.1 0.2 4 14 441 451 439 463 0.78 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF81-202 - 661 7.6e-08 32.0 51.6 6 12 0.019 10 6.0 0.2 6 26 471 491 468 492 0.92 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF81-202 - 661 7.6e-08 32.0 51.6 7 12 0.014 7.3 6.4 0.1 7 23 500 516 498 518 0.92 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF81-202 - 661 7.6e-08 32.0 51.6 8 12 0.014 7.5 6.4 0.1 4 26 525 547 523 548 0.85 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF81-202 - 661 7.6e-08 32.0 51.6 9 12 0.56 3e+02 1.3 0.1 7 14 556 563 554 575 0.81 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF81-202 - 661 7.6e-08 32.0 51.6 10 12 0.17 93 2.9 0.0 5 26 582 603 579 604 0.92 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF81-202 - 661 7.6e-08 32.0 51.6 11 12 0.038 21 5.0 0.1 7 26 612 631 610 632 0.89 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF81-202 - 661 7.6e-08 32.0 51.6 12 12 0.0015 0.81 9.5 0.2 5 26 638 659 636 660 0.94 zinc-finger C2H2-type zinc_ribbon_9 PF14369.6 35 ZNF81-202 - 661 3.2e-07 30.5 28.9 1 12 0.047 26 5.2 0.0 15 33 322 341 318 345 0.73 zinc-ribbon zinc_ribbon_9 PF14369.6 35 ZNF81-202 - 661 3.2e-07 30.5 28.9 2 12 0.28 1.5e+02 2.7 0.1 17 31 354 367 348 369 0.73 zinc-ribbon zinc_ribbon_9 PF14369.6 35 ZNF81-202 - 661 3.2e-07 30.5 28.9 3 12 0.71 3.8e+02 1.4 0.1 24 31 388 395 374 395 0.77 zinc-ribbon zinc_ribbon_9 PF14369.6 35 ZNF81-202 - 661 3.2e-07 30.5 28.9 4 12 0.84 4.6e+02 1.2 0.0 22 32 415 424 402 426 0.74 zinc-ribbon zinc_ribbon_9 PF14369.6 35 ZNF81-202 - 661 3.2e-07 30.5 28.9 5 12 0.019 10 6.5 0.0 13 33 434 453 430 455 0.75 zinc-ribbon zinc_ribbon_9 PF14369.6 35 ZNF81-202 - 661 3.2e-07 30.5 28.9 6 12 5.9 3.2e+03 -1.5 0.2 19 31 468 479 460 479 0.69 zinc-ribbon zinc_ribbon_9 PF14369.6 35 ZNF81-202 - 661 3.2e-07 30.5 28.9 7 12 0.2 1.1e+02 3.2 0.0 15 31 492 507 486 510 0.70 zinc-ribbon zinc_ribbon_9 PF14369.6 35 ZNF81-202 - 661 3.2e-07 30.5 28.9 8 12 0.27 1.5e+02 2.8 0.0 22 32 525 536 514 538 0.71 zinc-ribbon zinc_ribbon_9 PF14369.6 35 ZNF81-202 - 661 3.2e-07 30.5 28.9 9 12 0.11 60 4.0 0.0 14 33 547 565 542 568 0.75 zinc-ribbon zinc_ribbon_9 PF14369.6 35 ZNF81-202 - 661 3.2e-07 30.5 28.9 10 12 0.085 46 4.4 0.2 14 31 575 591 572 591 0.71 zinc-ribbon zinc_ribbon_9 PF14369.6 35 ZNF81-202 - 661 3.2e-07 30.5 28.9 11 12 0.14 78 3.7 0.0 15 32 602 620 596 622 0.67 zinc-ribbon zinc_ribbon_9 PF14369.6 35 ZNF81-202 - 661 3.2e-07 30.5 28.9 12 12 0.076 41 4.5 0.0 16 32 633 648 626 650 0.70 zinc-ribbon zinc_ribbon_15 PF17032.5 86 ZNF81-202 - 661 3.6e-07 30.8 50.5 1 7 3.2 1.7e+03 -0.2 0.3 36 75 244 283 228 290 0.75 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF81-202 - 661 3.6e-07 30.8 50.5 2 7 0.00058 0.32 11.8 2.4 29 74 321 366 305 372 0.89 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF81-202 - 661 3.6e-07 30.8 50.5 3 7 0.0015 0.82 10.5 1.2 32 78 380 426 374 430 0.84 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF81-202 - 661 3.6e-07 30.8 50.5 4 7 0.0061 3.3 8.5 0.8 32 78 436 482 431 486 0.84 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF81-202 - 661 3.6e-07 30.8 50.5 5 7 0.00013 0.071 13.9 2.4 33 81 493 541 485 545 0.86 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF81-202 - 661 3.6e-07 30.8 50.5 6 7 0.013 7 7.5 1.4 34 77 550 593 543 600 0.83 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF81-202 - 661 3.6e-07 30.8 50.5 7 7 0.0054 2.9 8.7 1.1 33 77 605 649 598 653 0.82 zinc-ribbon family zf-trcl PF13451.6 48 ZNF81-202 - 661 4.5e-07 29.6 49.1 1 11 0.086 47 4.0 0.1 3 15 328 340 326 344 0.87 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF81-202 - 661 4.5e-07 29.6 49.1 2 11 0.042 23 5.0 0.1 2 14 355 367 354 371 0.88 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF81-202 - 661 4.5e-07 29.6 49.1 3 11 1.1 6.1e+02 0.4 0.2 3 14 384 395 383 397 0.83 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF81-202 - 661 4.5e-07 29.6 49.1 4 11 0.26 1.4e+02 2.4 0.4 4 15 413 424 411 426 0.85 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF81-202 - 661 4.5e-07 29.6 49.1 5 11 0.051 28 4.7 0.1 4 15 441 452 439 456 0.84 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF81-202 - 661 4.5e-07 29.6 49.1 6 11 0.057 31 4.6 0.1 3 14 468 479 466 484 0.90 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF81-202 - 661 4.5e-07 29.6 49.1 7 11 0.035 19 5.2 0.1 3 15 496 508 494 511 0.90 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF81-202 - 661 4.5e-07 29.6 49.1 8 11 0.061 33 4.5 0.1 3 15 524 536 522 537 0.89 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF81-202 - 661 4.5e-07 29.6 49.1 9 11 0.00076 0.41 10.6 2.6 3 41 552 589 550 594 0.80 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF81-202 - 661 4.5e-07 29.6 49.1 10 11 0.04 22 5.0 0.1 3 15 608 620 606 621 0.90 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF81-202 - 661 4.5e-07 29.6 49.1 11 11 0.0027 1.5 8.8 0.2 2 15 635 648 634 650 0.93 Probable zinc-ribbon domain # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF81-202.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF81-202.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF81-202.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF81-202.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF81-202.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:14:56 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF81-203.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF81-203.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF81-203.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF81-203.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF81-203.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:14:56 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZNF81-204 - 661 3.8e-82 267.3 80.0 1 14 0.84 4.6e+02 1.5 1.0 2 22 233 253 232 255 0.73 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF81-204 - 661 3.8e-82 267.3 80.0 2 14 0.027 15 6.2 0.4 6 20 293 307 286 313 0.69 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF81-204 - 661 3.8e-82 267.3 80.0 3 14 0.00096 0.52 10.8 0.1 6 24 321 339 321 341 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF81-204 - 661 3.8e-82 267.3 80.0 4 14 2.3e-08 1.2e-05 25.5 1.8 2 24 345 367 344 369 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF81-204 - 661 3.8e-82 267.3 80.0 5 14 3.3e-09 1.8e-06 28.1 0.3 2 25 373 396 372 396 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF81-204 - 661 3.8e-82 267.3 80.0 6 14 3.3e-09 1.8e-06 28.1 1.3 1 25 400 424 400 425 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF81-204 - 661 3.8e-82 267.3 80.0 7 14 2.8e-06 0.0015 18.9 0.0 2 24 429 451 428 453 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF81-204 - 661 3.8e-82 267.3 80.0 8 14 6.6e-11 3.6e-08 33.5 0.5 1 24 456 479 456 481 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF81-204 - 661 3.8e-82 267.3 80.0 9 14 1.2e-09 6.7e-07 29.5 0.3 2 26 485 509 484 509 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF81-204 - 661 3.8e-82 267.3 80.0 10 14 4.4e-08 2.4e-05 24.6 0.2 1 25 512 536 512 537 0.97 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF81-204 - 661 3.8e-82 267.3 80.0 11 14 1.9e-08 1e-05 25.7 0.1 1 24 540 563 540 565 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF81-204 - 661 3.8e-82 267.3 80.0 12 14 1.9e-09 1e-06 28.9 1.4 2 25 569 592 568 593 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF81-204 - 661 3.8e-82 267.3 80.0 13 14 6.5e-09 3.5e-06 27.2 0.4 1 25 596 620 596 621 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF81-204 - 661 3.8e-82 267.3 80.0 14 14 7.7e-10 4.2e-07 30.1 0.7 1 25 624 648 624 649 0.95 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZNF81-204 - 661 6.3e-70 227.9 97.1 1 16 1.5 8.2e+02 0.8 0.4 7 19 196 208 196 211 0.87 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF81-204 - 661 6.3e-70 227.9 97.1 2 16 0.048 26 5.5 0.5 7 23 224 240 224 240 0.94 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF81-204 - 661 6.3e-70 227.9 97.1 3 16 3.5 1.9e+03 -0.4 0.2 3 16 246 261 245 263 0.79 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF81-204 - 661 6.3e-70 227.9 97.1 4 16 3.4 1.8e+03 -0.3 0.1 7 16 280 289 274 291 0.76 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF81-204 - 661 6.3e-70 227.9 97.1 5 16 6.3e-07 0.00034 20.9 0.2 1 23 330 352 330 352 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF81-204 - 661 6.3e-70 227.9 97.1 6 16 1.9e-07 0.00011 22.5 1.6 1 23 358 380 358 380 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF81-204 - 661 6.3e-70 227.9 97.1 7 16 1.7e-06 0.00094 19.5 0.1 1 23 386 408 386 408 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF81-204 - 661 6.3e-70 227.9 97.1 8 16 4.9e-08 2.7e-05 24.4 2.7 1 23 414 436 414 436 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF81-204 - 661 6.3e-70 227.9 97.1 9 16 3.6e-07 0.0002 21.7 0.2 1 23 442 464 442 464 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF81-204 - 661 6.3e-70 227.9 97.1 10 16 3.8e-09 2.1e-06 27.9 0.8 1 23 470 492 470 492 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF81-204 - 661 6.3e-70 227.9 97.1 11 16 7.6e-09 4.1e-06 26.9 0.8 1 23 498 520 498 520 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF81-204 - 661 6.3e-70 227.9 97.1 12 16 1.2e-07 6.6e-05 23.1 0.3 1 23 526 548 526 548 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF81-204 - 661 6.3e-70 227.9 97.1 13 16 1.8e-08 9.8e-06 25.8 0.1 1 23 554 576 554 576 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF81-204 - 661 6.3e-70 227.9 97.1 14 16 7.5e-09 4.1e-06 27.0 2.6 1 23 582 604 582 604 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF81-204 - 661 6.3e-70 227.9 97.1 15 16 1.2e-07 6.6e-05 23.1 0.3 1 23 610 632 610 632 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF81-204 - 661 6.3e-70 227.9 97.1 16 16 7.8e-07 0.00042 20.6 0.7 1 23 638 660 638 660 0.98 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZNF81-204 - 661 1.3e-38 128.3 85.0 1 14 0.39 2.1e+02 3.2 0.6 7 23 224 240 222 241 0.90 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF81-204 - 661 1.3e-38 128.3 85.0 2 14 9.8 5.3e+03 -1.2 0.1 5 17 250 262 246 263 0.79 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF81-204 - 661 1.3e-38 128.3 85.0 3 14 0.00015 0.083 13.8 0.2 1 23 330 352 330 353 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF81-204 - 661 1.3e-38 128.3 85.0 4 14 8e-06 0.0044 17.8 1.4 1 23 358 380 358 381 0.97 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF81-204 - 661 1.3e-38 128.3 85.0 5 14 8.4e-05 0.045 14.6 0.1 1 23 386 408 386 409 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF81-204 - 661 1.3e-38 128.3 85.0 6 14 9.1e-05 0.049 14.5 1.9 1 23 414 436 414 437 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF81-204 - 661 1.3e-38 128.3 85.0 7 14 0.0001 0.056 14.3 0.2 1 23 442 464 442 465 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF81-204 - 661 1.3e-38 128.3 85.0 8 14 2.6e-06 0.0014 19.3 0.7 1 23 470 492 470 493 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF81-204 - 661 1.3e-38 128.3 85.0 9 14 2.8e-06 0.0015 19.2 0.5 1 23 498 520 498 521 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF81-204 - 661 1.3e-38 128.3 85.0 10 14 0.00037 0.2 12.6 0.2 1 23 526 548 526 549 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF81-204 - 661 1.3e-38 128.3 85.0 11 14 0.00066 0.36 11.8 0.1 1 23 554 576 554 577 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF81-204 - 661 1.3e-38 128.3 85.0 12 14 1.4e-05 0.0075 17.0 2.2 1 23 582 604 582 605 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF81-204 - 661 1.3e-38 128.3 85.0 13 14 0.00037 0.2 12.6 0.2 1 23 610 632 610 633 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF81-204 - 661 1.3e-38 128.3 85.0 14 14 0.00025 0.13 13.1 0.5 1 23 638 660 638 661 0.84 C2H2-type zinc finger KRAB PF01352.27 42 ZNF81-204 - 661 1.5e-23 82.2 1.2 1 1 5e-26 2.7e-23 81.3 1.2 1 42 20 61 20 61 0.99 KRAB box zf-C2H2_6 PF13912.6 27 ZNF81-204 - 661 3e-16 59.0 70.4 1 12 0.00054 0.29 11.2 0.2 2 25 330 353 329 355 0.92 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF81-204 - 661 3e-16 59.0 70.4 2 12 0.0013 0.68 10.0 0.8 2 11 358 367 358 382 0.82 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF81-204 - 661 3e-16 59.0 70.4 3 12 0.00044 0.24 11.5 0.3 2 22 386 406 385 410 0.80 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF81-204 - 661 3e-16 59.0 70.4 4 12 0.00046 0.25 11.4 1.9 1 20 413 432 413 438 0.79 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF81-204 - 661 3e-16 59.0 70.4 5 12 0.13 72 3.6 0.1 2 11 442 451 441 452 0.88 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF81-204 - 661 3e-16 59.0 70.4 6 12 1.1e-05 0.0059 16.6 0.7 2 24 470 492 470 495 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF81-204 - 661 3e-16 59.0 70.4 7 12 4.5e-06 0.0024 17.8 0.7 2 24 498 520 498 523 0.95 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF81-204 - 661 3e-16 59.0 70.4 8 12 0.014 7.5 6.7 0.1 2 11 526 535 525 537 0.91 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF81-204 - 661 3e-16 59.0 70.4 9 12 3.3 1.8e+03 -0.9 0.1 2 11 554 563 554 576 0.71 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF81-204 - 661 3e-16 59.0 70.4 10 12 0.14 74 3.5 1.7 2 12 582 592 582 593 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF81-204 - 661 3e-16 59.0 70.4 11 12 0.021 11 6.1 0.1 2 11 610 619 610 621 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF81-204 - 661 3e-16 59.0 70.4 12 12 0.058 31 4.7 0.5 2 20 638 656 638 660 0.78 C2H2-type zinc finger zf_UBZ PF18439.1 32 ZNF81-204 - 661 5.5e-14 51.5 43.4 1 12 0.011 6.1 6.5 0.1 3 17 330 345 328 349 0.78 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF81-204 - 661 5.5e-14 51.5 43.4 2 12 0.044 24 4.6 0.1 3 12 358 367 356 377 0.80 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF81-204 - 661 5.5e-14 51.5 43.4 3 12 0.014 7.5 6.2 0.0 3 15 386 398 384 405 0.78 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF81-204 - 661 5.5e-14 51.5 43.4 4 12 0.037 20 4.9 0.2 2 13 413 424 412 433 0.81 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF81-204 - 661 5.5e-14 51.5 43.4 5 12 0.028 15 5.2 0.1 2 13 441 452 440 461 0.81 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF81-204 - 661 5.5e-14 51.5 43.4 6 12 0.00027 0.14 11.7 0.3 3 20 470 488 468 489 0.88 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF81-204 - 661 5.5e-14 51.5 43.4 7 12 0.021 12 5.6 0.1 3 20 498 516 496 517 0.75 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF81-204 - 661 5.5e-14 51.5 43.4 8 12 0.005 2.7 7.7 0.1 2 15 525 538 524 545 0.77 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF81-204 - 661 5.5e-14 51.5 43.4 9 12 0.011 6.2 6.5 0.1 3 21 554 573 552 573 0.83 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF81-204 - 661 5.5e-14 51.5 43.4 10 12 0.025 14 5.4 0.2 3 13 582 592 580 600 0.89 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF81-204 - 661 5.5e-14 51.5 43.4 11 12 0.012 6.5 6.4 0.1 3 15 610 622 608 629 0.77 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF81-204 - 661 5.5e-14 51.5 43.4 12 12 0.035 19 4.9 0.1 3 13 638 648 636 654 0.82 Ubiquitin-Binding Zinc Finger Zn-ribbon_8 PF09723.10 40 ZNF81-204 - 661 1e-13 51.1 52.7 1 11 0.0092 5 7.3 4.3 6 34 330 365 329 367 0.83 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF81-204 - 661 1e-13 51.1 52.7 2 11 0.0078 4.3 7.6 0.6 6 19 358 371 357 380 0.83 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF81-204 - 661 1e-13 51.1 52.7 3 11 0.0001 0.057 13.6 2.0 6 36 386 423 385 428 0.87 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF81-204 - 661 1e-13 51.1 52.7 4 11 0.00081 0.44 10.7 2.2 6 34 442 477 440 480 0.91 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF81-204 - 661 1e-13 51.1 52.7 5 11 0.00021 0.12 12.6 2.8 6 35 470 506 469 511 0.84 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF81-204 - 661 1e-13 51.1 52.7 6 11 0.00014 0.079 13.1 1.9 6 35 498 534 497 538 0.90 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF81-204 - 661 1e-13 51.1 52.7 7 11 8.7e-05 0.047 13.8 1.4 6 34 526 561 525 567 0.90 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF81-204 - 661 1e-13 51.1 52.7 8 11 0.00011 0.058 13.5 2.9 6 37 554 592 552 595 0.87 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF81-204 - 661 1e-13 51.1 52.7 9 11 7.6e-05 0.041 14.0 2.8 6 35 582 618 581 623 0.92 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF81-204 - 661 1e-13 51.1 52.7 10 11 0.0001 0.057 13.6 2.1 6 35 610 647 609 652 0.87 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF81-204 - 661 1e-13 51.1 52.7 11 11 0.007 3.8 7.7 0.2 6 16 638 648 637 658 0.80 Zinc ribbon domain zf-C2H2_jaz PF12171.8 27 ZNF81-204 - 661 1.4e-08 34.8 56.0 1 11 0.16 90 3.5 0.4 2 24 330 352 329 352 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF81-204 - 661 1.4e-08 34.8 56.0 2 11 0.078 42 4.6 0.5 2 23 358 379 357 380 0.90 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF81-204 - 661 1.4e-08 34.8 56.0 3 11 0.047 25 5.3 0.1 2 22 386 406 385 406 0.86 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF81-204 - 661 1.4e-08 34.8 56.0 4 11 0.12 65 4.0 0.8 2 22 414 434 413 434 0.91 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF81-204 - 661 1.4e-08 34.8 56.0 5 11 0.00039 0.21 11.9 0.1 2 22 470 490 469 490 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF81-204 - 661 1.4e-08 34.8 56.0 6 11 3.3e-05 0.018 15.3 0.4 2 24 498 520 497 520 0.95 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF81-204 - 661 1.4e-08 34.8 56.0 7 11 0.0064 3.5 8.0 0.4 2 21 526 545 525 546 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF81-204 - 661 1.4e-08 34.8 56.0 8 11 1.3 7e+02 0.7 0.0 2 22 554 574 553 574 0.89 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF81-204 - 661 1.4e-08 34.8 56.0 9 11 0.032 17 5.8 0.4 2 21 582 601 581 602 0.83 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF81-204 - 661 1.4e-08 34.8 56.0 10 11 0.0054 2.9 8.3 0.2 2 21 610 629 609 630 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF81-204 - 661 1.4e-08 34.8 56.0 11 11 0.37 2e+02 2.4 0.0 2 22 638 658 637 658 0.87 Zinc-finger double-stranded RNA-binding DZR PF12773.7 49 ZNF81-204 - 661 4.2e-08 33.1 50.1 1 3 0.5 2.7e+02 1.7 0.1 7 32 238 277 235 293 0.64 Double zinc ribbon DZR PF12773.7 49 ZNF81-204 - 661 4.2e-08 33.1 50.1 2 3 0.00085 0.46 10.5 0.3 11 37 328 366 321 373 0.85 Double zinc ribbon DZR PF12773.7 49 ZNF81-204 - 661 4.2e-08 33.1 50.1 3 3 0.01 5.5 7.1 14.3 1 49 416 504 376 504 0.90 Double zinc ribbon zf-C2H2_11 PF16622.5 29 ZNF81-204 - 661 7.6e-08 32.0 51.6 1 12 2 1.1e+03 -0.5 0.3 7 14 332 339 329 340 0.87 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF81-204 - 661 7.6e-08 32.0 51.6 2 12 0.018 10 6.0 0.2 5 23 358 376 355 379 0.92 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF81-204 - 661 7.6e-08 32.0 51.6 3 12 0.028 15 5.4 0.2 7 26 388 407 386 408 0.89 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF81-204 - 661 7.6e-08 32.0 51.6 4 12 0.0019 1 9.2 2.5 5 26 414 435 411 436 0.94 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF81-204 - 661 7.6e-08 32.0 51.6 5 12 0.3 1.6e+02 2.1 0.2 4 14 441 451 439 463 0.78 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF81-204 - 661 7.6e-08 32.0 51.6 6 12 0.019 10 6.0 0.2 6 26 471 491 468 492 0.92 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF81-204 - 661 7.6e-08 32.0 51.6 7 12 0.014 7.3 6.4 0.1 7 23 500 516 498 518 0.92 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF81-204 - 661 7.6e-08 32.0 51.6 8 12 0.014 7.5 6.4 0.1 4 26 525 547 523 548 0.85 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF81-204 - 661 7.6e-08 32.0 51.6 9 12 0.56 3e+02 1.3 0.1 7 14 556 563 554 575 0.81 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF81-204 - 661 7.6e-08 32.0 51.6 10 12 0.17 93 2.9 0.0 5 26 582 603 579 604 0.92 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF81-204 - 661 7.6e-08 32.0 51.6 11 12 0.038 21 5.0 0.1 7 26 612 631 610 632 0.89 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF81-204 - 661 7.6e-08 32.0 51.6 12 12 0.0015 0.81 9.5 0.2 5 26 638 659 636 660 0.94 zinc-finger C2H2-type zinc_ribbon_9 PF14369.6 35 ZNF81-204 - 661 3.2e-07 30.5 28.9 1 12 0.047 26 5.2 0.0 15 33 322 341 318 345 0.73 zinc-ribbon zinc_ribbon_9 PF14369.6 35 ZNF81-204 - 661 3.2e-07 30.5 28.9 2 12 0.28 1.5e+02 2.7 0.1 17 31 354 367 348 369 0.73 zinc-ribbon zinc_ribbon_9 PF14369.6 35 ZNF81-204 - 661 3.2e-07 30.5 28.9 3 12 0.71 3.8e+02 1.4 0.1 24 31 388 395 374 395 0.77 zinc-ribbon zinc_ribbon_9 PF14369.6 35 ZNF81-204 - 661 3.2e-07 30.5 28.9 4 12 0.84 4.6e+02 1.2 0.0 22 32 415 424 402 426 0.74 zinc-ribbon zinc_ribbon_9 PF14369.6 35 ZNF81-204 - 661 3.2e-07 30.5 28.9 5 12 0.019 10 6.5 0.0 13 33 434 453 430 455 0.75 zinc-ribbon zinc_ribbon_9 PF14369.6 35 ZNF81-204 - 661 3.2e-07 30.5 28.9 6 12 5.9 3.2e+03 -1.5 0.2 19 31 468 479 460 479 0.69 zinc-ribbon zinc_ribbon_9 PF14369.6 35 ZNF81-204 - 661 3.2e-07 30.5 28.9 7 12 0.2 1.1e+02 3.2 0.0 15 31 492 507 486 510 0.70 zinc-ribbon zinc_ribbon_9 PF14369.6 35 ZNF81-204 - 661 3.2e-07 30.5 28.9 8 12 0.27 1.5e+02 2.8 0.0 22 32 525 536 514 538 0.71 zinc-ribbon zinc_ribbon_9 PF14369.6 35 ZNF81-204 - 661 3.2e-07 30.5 28.9 9 12 0.11 60 4.0 0.0 14 33 547 565 542 568 0.75 zinc-ribbon zinc_ribbon_9 PF14369.6 35 ZNF81-204 - 661 3.2e-07 30.5 28.9 10 12 0.085 46 4.4 0.2 14 31 575 591 572 591 0.71 zinc-ribbon zinc_ribbon_9 PF14369.6 35 ZNF81-204 - 661 3.2e-07 30.5 28.9 11 12 0.14 78 3.7 0.0 15 32 602 620 596 622 0.67 zinc-ribbon zinc_ribbon_9 PF14369.6 35 ZNF81-204 - 661 3.2e-07 30.5 28.9 12 12 0.076 41 4.5 0.0 16 32 633 648 626 650 0.70 zinc-ribbon zinc_ribbon_15 PF17032.5 86 ZNF81-204 - 661 3.6e-07 30.8 50.5 1 7 3.2 1.7e+03 -0.2 0.3 36 75 244 283 228 290 0.75 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF81-204 - 661 3.6e-07 30.8 50.5 2 7 0.00058 0.32 11.8 2.4 29 74 321 366 305 372 0.89 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF81-204 - 661 3.6e-07 30.8 50.5 3 7 0.0015 0.82 10.5 1.2 32 78 380 426 374 430 0.84 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF81-204 - 661 3.6e-07 30.8 50.5 4 7 0.0061 3.3 8.5 0.8 32 78 436 482 431 486 0.84 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF81-204 - 661 3.6e-07 30.8 50.5 5 7 0.00013 0.071 13.9 2.4 33 81 493 541 485 545 0.86 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF81-204 - 661 3.6e-07 30.8 50.5 6 7 0.013 7 7.5 1.4 34 77 550 593 543 600 0.83 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF81-204 - 661 3.6e-07 30.8 50.5 7 7 0.0054 2.9 8.7 1.1 33 77 605 649 598 653 0.82 zinc-ribbon family zf-trcl PF13451.6 48 ZNF81-204 - 661 4.5e-07 29.6 49.1 1 11 0.086 47 4.0 0.1 3 15 328 340 326 344 0.87 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF81-204 - 661 4.5e-07 29.6 49.1 2 11 0.042 23 5.0 0.1 2 14 355 367 354 371 0.88 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF81-204 - 661 4.5e-07 29.6 49.1 3 11 1.1 6.1e+02 0.4 0.2 3 14 384 395 383 397 0.83 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF81-204 - 661 4.5e-07 29.6 49.1 4 11 0.26 1.4e+02 2.4 0.4 4 15 413 424 411 426 0.85 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF81-204 - 661 4.5e-07 29.6 49.1 5 11 0.051 28 4.7 0.1 4 15 441 452 439 456 0.84 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF81-204 - 661 4.5e-07 29.6 49.1 6 11 0.057 31 4.6 0.1 3 14 468 479 466 484 0.90 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF81-204 - 661 4.5e-07 29.6 49.1 7 11 0.035 19 5.2 0.1 3 15 496 508 494 511 0.90 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF81-204 - 661 4.5e-07 29.6 49.1 8 11 0.061 33 4.5 0.1 3 15 524 536 522 537 0.89 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF81-204 - 661 4.5e-07 29.6 49.1 9 11 0.00076 0.41 10.6 2.6 3 41 552 589 550 594 0.80 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF81-204 - 661 4.5e-07 29.6 49.1 10 11 0.04 22 5.0 0.1 3 15 608 620 606 621 0.90 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF81-204 - 661 4.5e-07 29.6 49.1 11 11 0.0027 1.5 8.8 0.2 2 15 635 648 634 650 0.93 Probable zinc-ribbon domain # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF81-204.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF81-204.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF81-204.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF81-204.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF81-204.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:14:57 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF81-205.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF81-205.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF81-205.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF81-205.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF81-205.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:14:57 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- KRAB PF01352.27 42 ZNF816-201 - 97 1.6e-23 82.1 0.0 1 1 1.3e-27 2.2e-23 81.6 0.0 2 42 24 64 23 64 0.97 KRAB box # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF816-201.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF816-201.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF816-201.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF816-201.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF816-201.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:14:57 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF816-202.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF816-202.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF816-202.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF816-202.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF816-202.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:14:58 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZNF816-203 - 651 4.6e-102 330.3 129.2 1 16 0.78 6.1e+02 1.1 0.1 2 13 90 101 89 104 0.88 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF816-203 - 651 4.6e-102 330.3 129.2 2 16 0.54 4.2e+02 1.7 0.4 13 25 227 239 198 240 0.64 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF816-203 - 651 4.6e-102 330.3 129.2 3 16 1.3e-06 0.001 19.4 1.2 2 25 244 267 244 268 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF816-203 - 651 4.6e-102 330.3 129.2 4 16 1.6e-07 0.00012 22.3 6.2 3 25 273 295 271 296 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF816-203 - 651 4.6e-102 330.3 129.2 5 16 1.3e-09 1e-06 28.8 2.3 5 25 303 323 299 324 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF816-203 - 651 4.6e-102 330.3 129.2 6 16 1e-09 7.9e-07 29.2 3.0 2 25 328 351 327 352 0.90 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF816-203 - 651 4.6e-102 330.3 129.2 7 16 1.7e-10 1.4e-07 31.6 0.2 1 25 355 379 355 380 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF816-203 - 651 4.6e-102 330.3 129.2 8 16 1e-06 0.00079 19.7 2.0 5 24 387 406 383 408 0.86 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF816-203 - 651 4.6e-102 330.3 129.2 9 16 8.4e-10 6.5e-07 29.5 1.8 1 25 411 435 411 436 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF816-203 - 651 4.6e-102 330.3 129.2 10 16 2.1e-10 1.6e-07 31.4 1.1 2 25 440 463 439 464 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF816-203 - 651 4.6e-102 330.3 129.2 11 16 1.8e-09 1.4e-06 28.5 1.9 1 25 467 491 467 492 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF816-203 - 651 4.6e-102 330.3 129.2 12 16 5.7e-10 4.5e-07 30.0 1.5 1 25 495 519 495 520 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF816-203 - 651 4.6e-102 330.3 129.2 13 16 1.9e-12 1.5e-09 37.8 2.8 1 25 523 547 523 548 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF816-203 - 651 4.6e-102 330.3 129.2 14 16 5.3e-11 4.1e-08 33.3 0.8 2 25 552 575 552 576 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF816-203 - 651 4.6e-102 330.3 129.2 15 16 4e-11 3.1e-08 33.7 0.3 2 25 580 603 580 604 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF816-203 - 651 4.6e-102 330.3 129.2 16 16 2.4e-10 1.9e-07 31.2 0.8 2 25 608 631 607 631 0.95 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZNF816-203 - 651 6.2e-70 228.0 145.1 1 15 2.8e-06 0.0022 18.4 1.3 3 23 229 251 228 251 0.93 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF816-203 - 651 6.2e-70 228.0 145.1 2 15 0.0018 1.4 9.5 4.5 1 21 257 277 257 279 0.93 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF816-203 - 651 6.2e-70 228.0 145.1 3 15 4.7e-06 0.0036 17.7 3.7 1 23 285 307 285 307 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF816-203 - 651 6.2e-70 228.0 145.1 4 15 4.5e-06 0.0035 17.7 4.5 1 23 313 335 313 335 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF816-203 - 651 6.2e-70 228.0 145.1 5 15 1.4e-07 0.00011 22.5 0.1 1 23 341 363 341 363 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF816-203 - 651 6.2e-70 228.0 145.1 6 15 8.8e-06 0.0069 16.8 5.0 1 23 369 391 369 391 0.94 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF816-203 - 651 6.2e-70 228.0 145.1 7 15 5.4e-07 0.00042 20.6 2.0 1 23 397 419 397 419 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF816-203 - 651 6.2e-70 228.0 145.1 8 15 8.5e-08 6.7e-05 23.1 0.7 1 23 425 447 425 447 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF816-203 - 651 6.2e-70 228.0 145.1 9 15 2.9e-07 0.00022 21.5 5.4 1 23 453 475 453 475 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF816-203 - 651 6.2e-70 228.0 145.1 10 15 1.5e-09 1.2e-06 28.7 2.1 1 23 481 503 481 503 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF816-203 - 651 6.2e-70 228.0 145.1 11 15 8.9e-10 6.9e-07 29.4 3.2 1 23 509 531 509 531 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF816-203 - 651 6.2e-70 228.0 145.1 12 15 1.3e-06 0.001 19.4 2.4 1 23 537 559 537 559 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF816-203 - 651 6.2e-70 228.0 145.1 13 15 1.3e-05 0.01 16.2 0.3 1 23 565 587 565 587 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF816-203 - 651 6.2e-70 228.0 145.1 14 15 1.6e-09 1.2e-06 28.6 0.4 1 23 593 615 593 615 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF816-203 - 651 6.2e-70 228.0 145.1 15 15 4.1e-08 3.2e-05 24.2 0.4 1 23 621 643 621 643 0.98 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZNF816-203 - 651 2.1e-37 124.5 135.4 1 15 0.002 1.6 9.8 1.1 5 23 231 251 227 252 0.78 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF816-203 - 651 2.1e-37 124.5 135.4 2 15 0.0075 5.9 8.0 3.5 1 19 257 275 257 279 0.77 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF816-203 - 651 2.1e-37 124.5 135.4 3 15 0.00019 0.15 13.0 2.9 1 23 285 307 285 308 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF816-203 - 651 2.1e-37 124.5 135.4 4 15 1.5e-05 0.011 16.5 3.8 1 23 313 335 313 336 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF816-203 - 651 2.1e-37 124.5 135.4 5 15 0.00011 0.084 13.8 0.1 1 23 341 363 341 364 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF816-203 - 651 2.1e-37 124.5 135.4 6 15 0.00012 0.093 13.6 4.3 1 23 369 391 369 392 0.88 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF816-203 - 651 2.1e-37 124.5 135.4 7 15 0.00032 0.25 12.3 1.2 1 23 397 419 397 420 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF816-203 - 651 2.1e-37 124.5 135.4 8 15 4.3e-05 0.034 15.0 0.8 1 23 425 447 425 448 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF816-203 - 651 2.1e-37 124.5 135.4 9 15 5.9e-05 0.046 14.6 3.8 1 23 453 475 453 476 0.91 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF816-203 - 651 2.1e-37 124.5 135.4 10 15 1.1e-05 0.0086 16.8 1.0 1 23 481 503 481 504 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF816-203 - 651 2.1e-37 124.5 135.4 11 15 6.4e-06 0.005 17.6 2.3 1 23 509 531 509 532 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF816-203 - 651 2.1e-37 124.5 135.4 12 15 0.00019 0.15 13.0 2.1 1 23 537 559 537 560 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF816-203 - 651 2.1e-37 124.5 135.4 13 15 0.00059 0.46 11.5 0.4 1 23 565 587 565 588 0.87 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF816-203 - 651 2.1e-37 124.5 135.4 14 15 6.6e-06 0.0051 17.5 0.5 1 23 593 615 593 616 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF816-203 - 651 2.1e-37 124.5 135.4 15 15 2.9e-05 0.023 15.5 0.2 1 23 621 643 621 644 0.95 C2H2-type zinc finger KRAB PF01352.27 42 ZNF816-203 - 651 7.3e-22 76.7 0.1 1 1 1.7e-24 1.3e-21 75.9 0.1 2 41 24 63 23 64 0.96 KRAB box Zn-ribbon_8 PF09723.10 40 ZNF816-203 - 651 5.2e-14 52.1 86.7 1 13 5.8 4.6e+03 -2.1 0.2 9 16 232 239 216 248 0.76 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF816-203 - 651 5.2e-14 52.1 86.7 2 13 0.0052 4 7.6 1.5 5 19 256 270 256 282 0.83 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF816-203 - 651 5.2e-14 52.1 86.7 3 13 0.00028 0.22 11.7 0.5 6 20 285 299 284 306 0.88 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF816-203 - 651 5.2e-14 52.1 86.7 4 13 0.0018 1.4 9.1 7.6 6 35 313 349 312 352 0.76 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF816-203 - 651 5.2e-14 52.1 86.7 5 13 7.5e-05 0.058 13.5 4.6 6 36 341 378 340 382 0.89 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF816-203 - 651 5.2e-14 52.1 86.7 6 13 0.014 11 6.2 7.7 6 34 369 404 367 411 0.73 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF816-203 - 651 5.2e-14 52.1 86.7 7 13 0.14 1.1e+02 3.1 0.9 6 15 397 406 395 416 0.85 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF816-203 - 651 5.2e-14 52.1 86.7 8 13 6.8e-05 0.053 13.6 2.7 6 38 425 464 424 466 0.90 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF816-203 - 651 5.2e-14 52.1 86.7 9 13 0.0048 3.7 7.7 0.1 6 18 481 493 480 502 0.84 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF816-203 - 651 5.2e-14 52.1 86.7 10 13 0.00088 0.69 10.1 4.5 6 35 509 545 508 549 0.85 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF816-203 - 651 5.2e-14 52.1 86.7 11 13 0.00027 0.21 11.7 3.5 6 34 565 600 564 600 0.93 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF816-203 - 651 5.2e-14 52.1 86.7 12 13 2.2e-06 0.0017 18.4 3.0 6 35 593 629 592 634 0.91 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF816-203 - 651 5.2e-14 52.1 86.7 13 13 0.0036 2.8 8.1 0.4 6 17 621 632 620 647 0.71 Zinc ribbon domain zf-C2H2_6 PF13912.6 27 ZNF816-203 - 651 1.1e-12 47.6 133.9 1 15 0.12 94 3.2 0.5 5 26 232 253 232 254 0.85 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF816-203 - 651 1.1e-12 47.6 133.9 2 15 0.0045 3.5 7.7 0.6 2 12 257 267 256 271 0.91 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF816-203 - 651 1.1e-12 47.6 133.9 3 15 0.00022 0.17 11.9 2.1 2 24 285 307 284 310 0.85 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF816-203 - 651 1.1e-12 47.6 133.9 4 15 0.00043 0.34 11.0 3.8 2 24 313 335 313 338 0.91 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF816-203 - 651 1.1e-12 47.6 133.9 5 15 2.6e-05 0.02 14.9 0.2 2 24 341 363 341 366 0.90 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF816-203 - 651 1.1e-12 47.6 133.9 6 15 0.00059 0.46 10.5 0.7 2 12 369 379 369 385 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF816-203 - 651 1.1e-12 47.6 133.9 7 15 1.2 9.1e+02 0.0 3.5 2 11 397 406 397 420 0.75 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF816-203 - 651 1.1e-12 47.6 133.9 8 15 4.8e-05 0.037 14.0 0.7 2 13 425 436 424 447 0.90 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF816-203 - 651 1.1e-12 47.6 133.9 9 15 0.0092 7.2 6.7 1.6 2 13 453 464 453 472 0.87 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF816-203 - 651 1.1e-12 47.6 133.9 10 15 0.00049 0.38 10.8 0.5 2 17 481 496 481 504 0.79 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF816-203 - 651 1.1e-12 47.6 133.9 11 15 0.00068 0.53 10.3 1.1 2 24 509 531 509 534 0.85 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF816-203 - 651 1.1e-12 47.6 133.9 12 15 0.00062 0.48 10.5 1.3 2 13 537 548 537 559 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF816-203 - 651 1.1e-12 47.6 133.9 13 15 0.059 46 4.2 1.3 2 12 565 575 565 576 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF816-203 - 651 1.1e-12 47.6 133.9 14 15 0.00013 0.1 12.7 0.7 2 24 593 615 593 618 0.83 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF816-203 - 651 1.1e-12 47.6 133.9 15 15 0.0018 1.4 9.0 0.6 2 12 621 631 621 643 0.79 C2H2-type zinc finger zf-C2H2_jaz PF12171.8 27 ZNF816-203 - 651 2.9e-10 40.2 76.4 1 14 0.16 1.2e+02 3.1 1.5 2 12 257 267 256 275 0.88 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF816-203 - 651 2.9e-10 40.2 76.4 2 14 0.2 1.6e+02 2.8 0.6 2 17 285 300 284 305 0.79 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF816-203 - 651 2.9e-10 40.2 76.4 3 14 0.018 14 6.1 0.5 2 20 313 331 312 333 0.85 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF816-203 - 651 2.9e-10 40.2 76.4 4 14 0.0058 4.5 7.7 0.0 2 21 341 360 340 361 0.91 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF816-203 - 651 2.9e-10 40.2 76.4 5 14 0.15 1.2e+02 3.2 1.6 2 18 369 385 368 387 0.83 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF816-203 - 651 2.9e-10 40.2 76.4 6 14 0.037 29 5.1 0.3 2 22 397 417 396 417 0.91 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF816-203 - 651 2.9e-10 40.2 76.4 7 14 1.5e-05 0.012 15.9 0.6 2 22 425 445 424 445 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF816-203 - 651 2.9e-10 40.2 76.4 8 14 0.43 3.4e+02 1.7 0.3 2 20 453 471 452 471 0.89 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF816-203 - 651 2.9e-10 40.2 76.4 9 14 0.032 25 5.3 0.0 2 20 481 499 480 499 0.91 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF816-203 - 651 2.9e-10 40.2 76.4 10 14 3.1e-05 0.024 14.9 0.2 2 21 509 528 508 529 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF816-203 - 651 2.9e-10 40.2 76.4 11 14 0.00022 0.17 12.2 0.7 2 21 537 556 536 557 0.89 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF816-203 - 651 2.9e-10 40.2 76.4 12 14 1.9 1.5e+03 -0.3 0.5 2 20 565 583 564 585 0.73 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF816-203 - 651 2.9e-10 40.2 76.4 13 14 0.021 16 5.9 0.3 2 22 593 613 592 613 0.91 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF816-203 - 651 2.9e-10 40.2 76.4 14 14 0.068 53 4.3 0.1 2 20 621 639 620 641 0.87 Zinc-finger double-stranded RNA-binding zf-C2H2_11 PF16622.5 29 ZNF816-203 - 651 6.4e-10 38.6 78.7 1 14 0.041 32 4.4 0.6 5 26 229 249 226 251 0.85 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF816-203 - 651 6.4e-10 38.6 78.7 2 14 0.0004 0.31 10.8 2.0 3 25 283 305 282 307 0.91 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF816-203 - 651 6.4e-10 38.6 78.7 3 14 0.00021 0.17 11.7 1.3 5 25 313 333 310 335 0.93 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF816-203 - 651 6.4e-10 38.6 78.7 4 14 0.15 1.1e+02 2.6 0.0 5 15 341 351 338 362 0.79 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF816-203 - 651 6.4e-10 38.6 78.7 5 14 0.0043 3.4 7.5 2.3 5 24 369 388 366 391 0.89 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF816-203 - 651 6.4e-10 38.6 78.7 6 14 0.11 84 3.1 0.1 5 26 397 418 394 419 0.90 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF816-203 - 651 6.4e-10 38.6 78.7 7 14 0.39 3.1e+02 1.3 0.1 3 24 423 444 422 447 0.79 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF816-203 - 651 6.4e-10 38.6 78.7 8 14 0.00074 0.58 10.0 1.2 5 23 453 471 450 474 0.91 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF816-203 - 651 6.4e-10 38.6 78.7 9 14 0.015 12 5.8 0.3 7 25 483 501 480 503 0.90 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF816-203 - 651 6.4e-10 38.6 78.7 10 14 0.0012 0.95 9.3 0.2 5 26 509 530 506 531 0.94 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF816-203 - 651 6.4e-10 38.6 78.7 11 14 0.72 5.6e+02 0.4 0.4 5 25 537 557 535 559 0.81 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF816-203 - 651 6.4e-10 38.6 78.7 12 14 1.4 1.1e+03 -0.5 0.1 5 25 565 585 563 587 0.83 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF816-203 - 651 6.4e-10 38.6 78.7 13 14 0.0012 0.9 9.4 0.0 5 25 593 613 590 615 0.91 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF816-203 - 651 6.4e-10 38.6 78.7 14 14 0.00096 0.75 9.6 0.1 5 26 621 642 618 643 0.88 zinc-finger C2H2-type zf-met PF12874.7 25 ZNF816-203 - 651 2.5e-08 34.0 92.5 1 14 0.033 26 5.4 0.4 1 11 257 267 257 272 0.87 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF816-203 - 651 2.5e-08 34.0 92.5 2 14 0.066 51 4.4 1.3 1 19 285 303 285 305 0.91 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF816-203 - 651 2.5e-08 34.0 92.5 3 14 0.036 28 5.3 1.2 1 19 313 331 313 333 0.94 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF816-203 - 651 2.5e-08 34.0 92.5 4 14 0.097 75 3.9 0.2 1 20 341 360 341 364 0.88 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF816-203 - 651 2.5e-08 34.0 92.5 5 14 0.027 21 5.7 3.2 1 19 369 387 369 387 0.97 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF816-203 - 651 2.5e-08 34.0 92.5 6 14 0.42 3.2e+02 1.9 0.4 1 19 397 415 397 420 0.86 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF816-203 - 651 2.5e-08 34.0 92.5 7 14 7.3e-06 0.0057 17.0 0.5 1 21 425 445 425 447 0.93 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF816-203 - 651 2.5e-08 34.0 92.5 8 14 0.35 2.7e+02 2.1 0.9 1 19 453 471 453 471 0.90 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF816-203 - 651 2.5e-08 34.0 92.5 9 14 0.023 18 5.9 0.1 1 19 481 499 481 499 0.95 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF816-203 - 651 2.5e-08 34.0 92.5 10 14 4e-05 0.031 14.7 0.4 1 20 509 528 509 532 0.91 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF816-203 - 651 2.5e-08 34.0 92.5 11 14 0.00012 0.09 13.2 1.8 1 21 537 557 537 560 0.92 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF816-203 - 651 2.5e-08 34.0 92.5 12 14 1.1 8.2e+02 0.6 0.7 1 21 565 585 565 587 0.87 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF816-203 - 651 2.5e-08 34.0 92.5 13 14 0.0078 6.1 7.4 0.8 1 21 593 613 593 615 0.92 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF816-203 - 651 2.5e-08 34.0 92.5 14 14 0.044 34 5.0 0.2 1 19 621 639 621 642 0.89 Zinc-finger of C2H2 type # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF816-203.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF816-203.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF816-203.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF816-203.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF816-203.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:14:58 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF816-204.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF816-204.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF816-204.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF816-204.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF816-204.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:14:59 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- KRAB PF01352.27 42 ZNF816-205 - 76 3.8e-23 80.8 0.2 1 1 7.9e-27 4.7e-23 80.6 0.2 2 41 24 63 23 64 0.95 KRAB box # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF816-205.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF816-205.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF816-205.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF816-205.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF816-205.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:14:59 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZNF816-206 - 651 4.6e-102 330.3 129.2 1 16 0.78 6.1e+02 1.1 0.1 2 13 90 101 89 104 0.88 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF816-206 - 651 4.6e-102 330.3 129.2 2 16 0.54 4.2e+02 1.7 0.4 13 25 227 239 198 240 0.64 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF816-206 - 651 4.6e-102 330.3 129.2 3 16 1.3e-06 0.001 19.4 1.2 2 25 244 267 244 268 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF816-206 - 651 4.6e-102 330.3 129.2 4 16 1.6e-07 0.00012 22.3 6.2 3 25 273 295 271 296 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF816-206 - 651 4.6e-102 330.3 129.2 5 16 1.3e-09 1e-06 28.8 2.3 5 25 303 323 299 324 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF816-206 - 651 4.6e-102 330.3 129.2 6 16 1e-09 7.9e-07 29.2 3.0 2 25 328 351 327 352 0.90 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF816-206 - 651 4.6e-102 330.3 129.2 7 16 1.7e-10 1.4e-07 31.6 0.2 1 25 355 379 355 380 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF816-206 - 651 4.6e-102 330.3 129.2 8 16 1e-06 0.00079 19.7 2.0 5 24 387 406 383 408 0.86 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF816-206 - 651 4.6e-102 330.3 129.2 9 16 8.4e-10 6.5e-07 29.5 1.8 1 25 411 435 411 436 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF816-206 - 651 4.6e-102 330.3 129.2 10 16 2.1e-10 1.6e-07 31.4 1.1 2 25 440 463 439 464 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF816-206 - 651 4.6e-102 330.3 129.2 11 16 1.8e-09 1.4e-06 28.5 1.9 1 25 467 491 467 492 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF816-206 - 651 4.6e-102 330.3 129.2 12 16 5.7e-10 4.5e-07 30.0 1.5 1 25 495 519 495 520 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF816-206 - 651 4.6e-102 330.3 129.2 13 16 1.9e-12 1.5e-09 37.8 2.8 1 25 523 547 523 548 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF816-206 - 651 4.6e-102 330.3 129.2 14 16 5.3e-11 4.1e-08 33.3 0.8 2 25 552 575 552 576 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF816-206 - 651 4.6e-102 330.3 129.2 15 16 4e-11 3.1e-08 33.7 0.3 2 25 580 603 580 604 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF816-206 - 651 4.6e-102 330.3 129.2 16 16 2.4e-10 1.9e-07 31.2 0.8 2 25 608 631 607 631 0.95 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZNF816-206 - 651 6.2e-70 228.0 145.1 1 15 2.8e-06 0.0022 18.4 1.3 3 23 229 251 228 251 0.93 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF816-206 - 651 6.2e-70 228.0 145.1 2 15 0.0018 1.4 9.5 4.5 1 21 257 277 257 279 0.93 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF816-206 - 651 6.2e-70 228.0 145.1 3 15 4.7e-06 0.0036 17.7 3.7 1 23 285 307 285 307 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF816-206 - 651 6.2e-70 228.0 145.1 4 15 4.5e-06 0.0035 17.7 4.5 1 23 313 335 313 335 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF816-206 - 651 6.2e-70 228.0 145.1 5 15 1.4e-07 0.00011 22.5 0.1 1 23 341 363 341 363 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF816-206 - 651 6.2e-70 228.0 145.1 6 15 8.8e-06 0.0069 16.8 5.0 1 23 369 391 369 391 0.94 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF816-206 - 651 6.2e-70 228.0 145.1 7 15 5.4e-07 0.00042 20.6 2.0 1 23 397 419 397 419 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF816-206 - 651 6.2e-70 228.0 145.1 8 15 8.5e-08 6.7e-05 23.1 0.7 1 23 425 447 425 447 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF816-206 - 651 6.2e-70 228.0 145.1 9 15 2.9e-07 0.00022 21.5 5.4 1 23 453 475 453 475 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF816-206 - 651 6.2e-70 228.0 145.1 10 15 1.5e-09 1.2e-06 28.7 2.1 1 23 481 503 481 503 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF816-206 - 651 6.2e-70 228.0 145.1 11 15 8.9e-10 6.9e-07 29.4 3.2 1 23 509 531 509 531 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF816-206 - 651 6.2e-70 228.0 145.1 12 15 1.3e-06 0.001 19.4 2.4 1 23 537 559 537 559 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF816-206 - 651 6.2e-70 228.0 145.1 13 15 1.3e-05 0.01 16.2 0.3 1 23 565 587 565 587 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF816-206 - 651 6.2e-70 228.0 145.1 14 15 1.6e-09 1.2e-06 28.6 0.4 1 23 593 615 593 615 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF816-206 - 651 6.2e-70 228.0 145.1 15 15 4.1e-08 3.2e-05 24.2 0.4 1 23 621 643 621 643 0.98 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZNF816-206 - 651 2.1e-37 124.5 135.4 1 15 0.002 1.6 9.8 1.1 5 23 231 251 227 252 0.78 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF816-206 - 651 2.1e-37 124.5 135.4 2 15 0.0075 5.9 8.0 3.5 1 19 257 275 257 279 0.77 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF816-206 - 651 2.1e-37 124.5 135.4 3 15 0.00019 0.15 13.0 2.9 1 23 285 307 285 308 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF816-206 - 651 2.1e-37 124.5 135.4 4 15 1.5e-05 0.011 16.5 3.8 1 23 313 335 313 336 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF816-206 - 651 2.1e-37 124.5 135.4 5 15 0.00011 0.084 13.8 0.1 1 23 341 363 341 364 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF816-206 - 651 2.1e-37 124.5 135.4 6 15 0.00012 0.093 13.6 4.3 1 23 369 391 369 392 0.88 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF816-206 - 651 2.1e-37 124.5 135.4 7 15 0.00032 0.25 12.3 1.2 1 23 397 419 397 420 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF816-206 - 651 2.1e-37 124.5 135.4 8 15 4.3e-05 0.034 15.0 0.8 1 23 425 447 425 448 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF816-206 - 651 2.1e-37 124.5 135.4 9 15 5.9e-05 0.046 14.6 3.8 1 23 453 475 453 476 0.91 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF816-206 - 651 2.1e-37 124.5 135.4 10 15 1.1e-05 0.0086 16.8 1.0 1 23 481 503 481 504 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF816-206 - 651 2.1e-37 124.5 135.4 11 15 6.4e-06 0.005 17.6 2.3 1 23 509 531 509 532 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF816-206 - 651 2.1e-37 124.5 135.4 12 15 0.00019 0.15 13.0 2.1 1 23 537 559 537 560 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF816-206 - 651 2.1e-37 124.5 135.4 13 15 0.00059 0.46 11.5 0.4 1 23 565 587 565 588 0.87 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF816-206 - 651 2.1e-37 124.5 135.4 14 15 6.6e-06 0.0051 17.5 0.5 1 23 593 615 593 616 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF816-206 - 651 2.1e-37 124.5 135.4 15 15 2.9e-05 0.023 15.5 0.2 1 23 621 643 621 644 0.95 C2H2-type zinc finger KRAB PF01352.27 42 ZNF816-206 - 651 7.3e-22 76.7 0.1 1 1 1.7e-24 1.3e-21 75.9 0.1 2 41 24 63 23 64 0.96 KRAB box Zn-ribbon_8 PF09723.10 40 ZNF816-206 - 651 5.2e-14 52.1 86.7 1 13 5.8 4.6e+03 -2.1 0.2 9 16 232 239 216 248 0.76 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF816-206 - 651 5.2e-14 52.1 86.7 2 13 0.0052 4 7.6 1.5 5 19 256 270 256 282 0.83 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF816-206 - 651 5.2e-14 52.1 86.7 3 13 0.00028 0.22 11.7 0.5 6 20 285 299 284 306 0.88 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF816-206 - 651 5.2e-14 52.1 86.7 4 13 0.0018 1.4 9.1 7.6 6 35 313 349 312 352 0.76 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF816-206 - 651 5.2e-14 52.1 86.7 5 13 7.5e-05 0.058 13.5 4.6 6 36 341 378 340 382 0.89 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF816-206 - 651 5.2e-14 52.1 86.7 6 13 0.014 11 6.2 7.7 6 34 369 404 367 411 0.73 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF816-206 - 651 5.2e-14 52.1 86.7 7 13 0.14 1.1e+02 3.1 0.9 6 15 397 406 395 416 0.85 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF816-206 - 651 5.2e-14 52.1 86.7 8 13 6.8e-05 0.053 13.6 2.7 6 38 425 464 424 466 0.90 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF816-206 - 651 5.2e-14 52.1 86.7 9 13 0.0048 3.7 7.7 0.1 6 18 481 493 480 502 0.84 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF816-206 - 651 5.2e-14 52.1 86.7 10 13 0.00088 0.69 10.1 4.5 6 35 509 545 508 549 0.85 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF816-206 - 651 5.2e-14 52.1 86.7 11 13 0.00027 0.21 11.7 3.5 6 34 565 600 564 600 0.93 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF816-206 - 651 5.2e-14 52.1 86.7 12 13 2.2e-06 0.0017 18.4 3.0 6 35 593 629 592 634 0.91 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF816-206 - 651 5.2e-14 52.1 86.7 13 13 0.0036 2.8 8.1 0.4 6 17 621 632 620 647 0.71 Zinc ribbon domain zf-C2H2_6 PF13912.6 27 ZNF816-206 - 651 1.1e-12 47.6 133.9 1 15 0.12 94 3.2 0.5 5 26 232 253 232 254 0.85 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF816-206 - 651 1.1e-12 47.6 133.9 2 15 0.0045 3.5 7.7 0.6 2 12 257 267 256 271 0.91 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF816-206 - 651 1.1e-12 47.6 133.9 3 15 0.00022 0.17 11.9 2.1 2 24 285 307 284 310 0.85 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF816-206 - 651 1.1e-12 47.6 133.9 4 15 0.00043 0.34 11.0 3.8 2 24 313 335 313 338 0.91 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF816-206 - 651 1.1e-12 47.6 133.9 5 15 2.6e-05 0.02 14.9 0.2 2 24 341 363 341 366 0.90 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF816-206 - 651 1.1e-12 47.6 133.9 6 15 0.00059 0.46 10.5 0.7 2 12 369 379 369 385 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF816-206 - 651 1.1e-12 47.6 133.9 7 15 1.2 9.1e+02 0.0 3.5 2 11 397 406 397 420 0.75 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF816-206 - 651 1.1e-12 47.6 133.9 8 15 4.8e-05 0.037 14.0 0.7 2 13 425 436 424 447 0.90 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF816-206 - 651 1.1e-12 47.6 133.9 9 15 0.0092 7.2 6.7 1.6 2 13 453 464 453 472 0.87 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF816-206 - 651 1.1e-12 47.6 133.9 10 15 0.00049 0.38 10.8 0.5 2 17 481 496 481 504 0.79 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF816-206 - 651 1.1e-12 47.6 133.9 11 15 0.00068 0.53 10.3 1.1 2 24 509 531 509 534 0.85 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF816-206 - 651 1.1e-12 47.6 133.9 12 15 0.00062 0.48 10.5 1.3 2 13 537 548 537 559 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF816-206 - 651 1.1e-12 47.6 133.9 13 15 0.059 46 4.2 1.3 2 12 565 575 565 576 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF816-206 - 651 1.1e-12 47.6 133.9 14 15 0.00013 0.1 12.7 0.7 2 24 593 615 593 618 0.83 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF816-206 - 651 1.1e-12 47.6 133.9 15 15 0.0018 1.4 9.0 0.6 2 12 621 631 621 643 0.79 C2H2-type zinc finger zf-C2H2_jaz PF12171.8 27 ZNF816-206 - 651 2.9e-10 40.2 76.4 1 14 0.16 1.2e+02 3.1 1.5 2 12 257 267 256 275 0.88 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF816-206 - 651 2.9e-10 40.2 76.4 2 14 0.2 1.6e+02 2.8 0.6 2 17 285 300 284 305 0.79 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF816-206 - 651 2.9e-10 40.2 76.4 3 14 0.018 14 6.1 0.5 2 20 313 331 312 333 0.85 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF816-206 - 651 2.9e-10 40.2 76.4 4 14 0.0058 4.5 7.7 0.0 2 21 341 360 340 361 0.91 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF816-206 - 651 2.9e-10 40.2 76.4 5 14 0.15 1.2e+02 3.2 1.6 2 18 369 385 368 387 0.83 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF816-206 - 651 2.9e-10 40.2 76.4 6 14 0.037 29 5.1 0.3 2 22 397 417 396 417 0.91 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF816-206 - 651 2.9e-10 40.2 76.4 7 14 1.5e-05 0.012 15.9 0.6 2 22 425 445 424 445 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF816-206 - 651 2.9e-10 40.2 76.4 8 14 0.43 3.4e+02 1.7 0.3 2 20 453 471 452 471 0.89 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF816-206 - 651 2.9e-10 40.2 76.4 9 14 0.032 25 5.3 0.0 2 20 481 499 480 499 0.91 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF816-206 - 651 2.9e-10 40.2 76.4 10 14 3.1e-05 0.024 14.9 0.2 2 21 509 528 508 529 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF816-206 - 651 2.9e-10 40.2 76.4 11 14 0.00022 0.17 12.2 0.7 2 21 537 556 536 557 0.89 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF816-206 - 651 2.9e-10 40.2 76.4 12 14 1.9 1.5e+03 -0.3 0.5 2 20 565 583 564 585 0.73 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF816-206 - 651 2.9e-10 40.2 76.4 13 14 0.021 16 5.9 0.3 2 22 593 613 592 613 0.91 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF816-206 - 651 2.9e-10 40.2 76.4 14 14 0.068 53 4.3 0.1 2 20 621 639 620 641 0.87 Zinc-finger double-stranded RNA-binding zf-C2H2_11 PF16622.5 29 ZNF816-206 - 651 6.4e-10 38.6 78.7 1 14 0.041 32 4.4 0.6 5 26 229 249 226 251 0.85 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF816-206 - 651 6.4e-10 38.6 78.7 2 14 0.0004 0.31 10.8 2.0 3 25 283 305 282 307 0.91 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF816-206 - 651 6.4e-10 38.6 78.7 3 14 0.00021 0.17 11.7 1.3 5 25 313 333 310 335 0.93 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF816-206 - 651 6.4e-10 38.6 78.7 4 14 0.15 1.1e+02 2.6 0.0 5 15 341 351 338 362 0.79 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF816-206 - 651 6.4e-10 38.6 78.7 5 14 0.0043 3.4 7.5 2.3 5 24 369 388 366 391 0.89 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF816-206 - 651 6.4e-10 38.6 78.7 6 14 0.11 84 3.1 0.1 5 26 397 418 394 419 0.90 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF816-206 - 651 6.4e-10 38.6 78.7 7 14 0.39 3.1e+02 1.3 0.1 3 24 423 444 422 447 0.79 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF816-206 - 651 6.4e-10 38.6 78.7 8 14 0.00074 0.58 10.0 1.2 5 23 453 471 450 474 0.91 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF816-206 - 651 6.4e-10 38.6 78.7 9 14 0.015 12 5.8 0.3 7 25 483 501 480 503 0.90 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF816-206 - 651 6.4e-10 38.6 78.7 10 14 0.0012 0.95 9.3 0.2 5 26 509 530 506 531 0.94 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF816-206 - 651 6.4e-10 38.6 78.7 11 14 0.72 5.6e+02 0.4 0.4 5 25 537 557 535 559 0.81 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF816-206 - 651 6.4e-10 38.6 78.7 12 14 1.4 1.1e+03 -0.5 0.1 5 25 565 585 563 587 0.83 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF816-206 - 651 6.4e-10 38.6 78.7 13 14 0.0012 0.9 9.4 0.0 5 25 593 613 590 615 0.91 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF816-206 - 651 6.4e-10 38.6 78.7 14 14 0.00096 0.75 9.6 0.1 5 26 621 642 618 643 0.88 zinc-finger C2H2-type zf-met PF12874.7 25 ZNF816-206 - 651 2.5e-08 34.0 92.5 1 14 0.033 26 5.4 0.4 1 11 257 267 257 272 0.87 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF816-206 - 651 2.5e-08 34.0 92.5 2 14 0.066 51 4.4 1.3 1 19 285 303 285 305 0.91 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF816-206 - 651 2.5e-08 34.0 92.5 3 14 0.036 28 5.3 1.2 1 19 313 331 313 333 0.94 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF816-206 - 651 2.5e-08 34.0 92.5 4 14 0.097 75 3.9 0.2 1 20 341 360 341 364 0.88 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF816-206 - 651 2.5e-08 34.0 92.5 5 14 0.027 21 5.7 3.2 1 19 369 387 369 387 0.97 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF816-206 - 651 2.5e-08 34.0 92.5 6 14 0.42 3.2e+02 1.9 0.4 1 19 397 415 397 420 0.86 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF816-206 - 651 2.5e-08 34.0 92.5 7 14 7.3e-06 0.0057 17.0 0.5 1 21 425 445 425 447 0.93 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF816-206 - 651 2.5e-08 34.0 92.5 8 14 0.35 2.7e+02 2.1 0.9 1 19 453 471 453 471 0.90 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF816-206 - 651 2.5e-08 34.0 92.5 9 14 0.023 18 5.9 0.1 1 19 481 499 481 499 0.95 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF816-206 - 651 2.5e-08 34.0 92.5 10 14 4e-05 0.031 14.7 0.4 1 20 509 528 509 532 0.91 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF816-206 - 651 2.5e-08 34.0 92.5 11 14 0.00012 0.09 13.2 1.8 1 21 537 557 537 560 0.92 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF816-206 - 651 2.5e-08 34.0 92.5 12 14 1.1 8.2e+02 0.6 0.7 1 21 565 585 565 587 0.87 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF816-206 - 651 2.5e-08 34.0 92.5 13 14 0.0078 6.1 7.4 0.8 1 21 593 613 593 615 0.92 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF816-206 - 651 2.5e-08 34.0 92.5 14 14 0.044 34 5.0 0.2 1 19 621 639 621 642 0.89 Zinc-finger of C2H2 type # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF816-206.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF816-206.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF816-206.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF816-206.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF816-206.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:15:00 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF816-207.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF816-207.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF816-207.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF816-207.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF816-207.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:15:00 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- KRAB PF01352.27 42 ZNF816-208 - 97 1.6e-23 82.1 0.0 1 1 1.3e-27 2.2e-23 81.6 0.0 2 42 24 64 23 64 0.97 KRAB box # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF816-208.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF816-208.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF816-208.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF816-208.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF816-208.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:15:00 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZNF8-201 - 575 1.1e-47 158.4 63.7 1 9 5.1e-05 0.057 13.9 1.1 11 26 253 268 248 268 0.88 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF8-201 - 575 1.1e-47 158.4 63.7 2 9 3.6e-10 4e-07 30.2 1.2 1 25 271 295 271 296 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF8-201 - 575 1.1e-47 158.4 63.7 3 9 4e-10 4.5e-07 30.0 1.0 1 24 299 322 299 323 0.97 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF8-201 - 575 1.1e-47 158.4 63.7 4 9 1.3e-10 1.4e-07 31.6 0.5 1 25 327 351 327 352 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF8-201 - 575 1.1e-47 158.4 63.7 5 9 5.3e-12 5.9e-09 36.0 1.1 4 25 358 379 355 380 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF8-201 - 575 1.1e-47 158.4 63.7 6 9 5.1e-08 5.7e-05 23.4 3.4 5 26 387 408 384 408 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF8-201 - 575 1.1e-47 158.4 63.7 7 9 5.5e-06 0.0062 16.9 0.1 2 17 412 427 411 429 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF8-201 - 575 1.1e-47 158.4 63.7 8 9 2e-05 0.023 15.1 0.7 7 24 459 476 438 478 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF8-201 - 575 1.1e-47 158.4 63.7 9 9 0.44 5e+02 1.4 1.8 1 12 481 492 481 496 0.80 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZNF8-201 - 575 3.4e-39 131.1 76.2 1 8 6.9e-09 7.7e-06 26.1 4.1 1 23 257 279 257 279 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF8-201 - 575 3.4e-39 131.1 76.2 2 8 1.5e-08 1.7e-05 25.0 0.3 1 23 285 307 285 307 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF8-201 - 575 3.4e-39 131.1 76.2 3 8 2.2e-07 0.00025 21.3 6.8 1 23 313 335 313 335 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF8-201 - 575 3.4e-39 131.1 76.2 4 8 1.3e-08 1.4e-05 25.3 0.6 1 23 341 363 341 363 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF8-201 - 575 3.4e-39 131.1 76.2 5 8 2.1e-07 0.00023 21.4 4.5 1 23 369 391 369 391 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF8-201 - 575 3.4e-39 131.1 76.2 6 8 2.6e-08 3e-05 24.2 4.3 1 23 397 419 397 419 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF8-201 - 575 3.4e-39 131.1 76.2 7 8 1.9e-08 2.1e-05 24.7 4.5 1 23 467 489 467 489 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF8-201 - 575 3.4e-39 131.1 76.2 8 8 0.31 3.5e+02 2.0 0.7 9 20 505 516 503 517 0.86 Zinc finger, C2H2 type KRAB PF01352.27 42 ZNF8-201 - 575 1.7e-24 85.2 0.0 1 1 2.7e-27 3.1e-24 84.4 0.0 1 42 24 65 24 65 0.98 KRAB box zf-C2H2_4 PF13894.6 24 ZNF8-201 - 575 7.1e-18 63.8 67.4 1 7 0.00012 0.14 13.1 2.6 1 23 257 279 257 280 0.90 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF8-201 - 575 7.1e-18 63.8 67.4 2 7 1.1e-05 0.013 16.3 0.4 1 23 285 307 285 308 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF8-201 - 575 7.1e-18 63.8 67.4 3 7 0.0023 2.5 9.2 5.7 1 23 313 335 313 336 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF8-201 - 575 7.1e-18 63.8 67.4 4 7 5.2e-06 0.0059 17.4 0.4 1 23 341 363 341 364 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF8-201 - 575 7.1e-18 63.8 67.4 5 7 2.6e-05 0.03 15.2 3.6 1 23 369 391 369 392 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF8-201 - 575 7.1e-18 63.8 67.4 6 7 2e-05 0.022 15.6 2.8 1 23 397 419 397 420 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF8-201 - 575 7.1e-18 63.8 67.4 7 7 3e-05 0.033 15.0 3.7 1 23 467 489 467 490 0.97 C2H2-type zinc finger # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF8-201.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF8-201.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF8-201.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF8-201.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF8-201.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:15:01 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZNF823-201 - 610 1.6e-109 353.8 154.3 1 18 5 6.4e+03 -2.1 0.0 15 24 66 80 62 82 0.56 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF823-201 - 610 1.6e-109 353.8 154.3 2 18 4.5 5.8e+03 -2.0 0.3 8 16 127 137 123 137 0.69 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF823-201 - 610 1.6e-109 353.8 154.3 3 18 2.2e-05 0.028 14.8 2.2 10 26 159 175 148 175 0.83 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF823-201 - 610 1.6e-109 353.8 154.3 4 18 4e-11 5.1e-08 33.0 0.5 1 25 178 202 178 202 0.97 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF823-201 - 610 1.6e-109 353.8 154.3 5 18 5.6e-10 7.2e-07 29.4 2.1 5 24 210 229 209 230 0.97 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF823-201 - 610 1.6e-109 353.8 154.3 6 18 5.4e-10 6.9e-07 29.4 0.9 2 24 235 257 234 258 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF823-201 - 610 1.6e-109 353.8 154.3 7 18 1.4e-10 1.7e-07 31.3 4.1 4 25 265 286 263 287 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF823-201 - 610 1.6e-109 353.8 154.3 8 18 1.4e-08 1.9e-05 24.9 3.0 4 25 293 314 292 315 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF823-201 - 610 1.6e-109 353.8 154.3 9 18 2.6e-09 3.4e-06 27.2 2.1 2 25 319 342 318 343 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF823-201 - 610 1.6e-109 353.8 154.3 10 18 1e-08 1.3e-05 25.4 1.6 3 23 348 368 346 371 0.89 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF823-201 - 610 1.6e-109 353.8 154.3 11 18 2.7e-08 3.5e-05 24.0 0.5 2 25 375 398 374 399 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF823-201 - 610 1.6e-109 353.8 154.3 12 18 6.8e-12 8.8e-09 35.4 1.9 2 25 403 426 403 426 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF823-201 - 610 1.6e-109 353.8 154.3 13 18 1e-07 0.00013 22.2 0.6 1 24 430 452 430 453 0.88 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF823-201 - 610 1.6e-109 353.8 154.3 14 18 5.8e-10 7.4e-07 29.3 3.2 2 25 458 481 457 482 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF823-201 - 610 1.6e-109 353.8 154.3 15 18 6.1e-11 7.8e-08 32.4 5.1 2 26 486 510 485 510 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF823-201 - 610 1.6e-109 353.8 154.3 16 18 3.5e-11 4.5e-08 33.2 0.5 1 25 513 537 513 537 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF823-201 - 610 1.6e-109 353.8 154.3 17 18 1.7e-11 2.1e-08 34.2 0.3 2 26 542 566 542 566 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF823-201 - 610 1.6e-109 353.8 154.3 18 18 7e-09 8.9e-06 25.9 0.5 2 23 570 591 570 594 0.92 Zinc-finger double domain zf-C2H2_4 PF13894.6 24 ZNF823-201 - 610 4.4e-49 160.9 146.5 1 17 8.3 1.1e+04 -2.1 0.1 5 10 75 80 67 83 0.83 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF823-201 - 610 4.4e-49 160.9 146.5 2 17 5.2e-08 6.7e-05 23.4 1.1 3 24 166 187 164 187 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF823-201 - 610 4.4e-49 160.9 146.5 3 17 0.00079 1 10.4 1.8 1 23 192 214 192 215 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF823-201 - 610 4.4e-49 160.9 146.5 4 17 3e-05 0.038 14.8 1.5 1 23 220 242 220 243 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF823-201 - 610 4.4e-49 160.9 146.5 5 17 9.3e-07 0.0012 19.5 1.1 1 23 248 270 248 271 0.97 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF823-201 - 610 4.4e-49 160.9 146.5 6 17 7.2e-05 0.092 13.6 4.0 1 23 276 298 276 299 0.83 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF823-201 - 610 4.4e-49 160.9 146.5 7 17 3.7e-05 0.047 14.5 5.0 1 23 304 326 304 327 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF823-201 - 610 4.4e-49 160.9 146.5 8 17 5.4e-06 0.0069 17.1 2.6 1 23 332 354 332 355 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF823-201 - 610 4.4e-49 160.9 146.5 9 17 1.1e-05 0.015 16.1 2.2 1 23 360 382 360 383 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF823-201 - 610 4.4e-49 160.9 146.5 10 17 4.7e-06 0.006 17.3 1.8 2 23 389 410 388 411 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF823-201 - 610 4.4e-49 160.9 146.5 11 17 1e-06 0.0013 19.4 0.3 1 23 416 438 416 439 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF823-201 - 610 4.4e-49 160.9 146.5 12 17 0.00011 0.14 13.1 0.9 1 23 444 465 444 466 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF823-201 - 610 4.4e-49 160.9 146.5 13 17 6.5e-06 0.0083 16.9 4.1 1 23 471 493 471 494 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF823-201 - 610 4.4e-49 160.9 146.5 14 17 0.0016 2 9.5 2.7 1 23 499 521 499 522 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF823-201 - 610 4.4e-49 160.9 146.5 15 17 0.00028 0.36 11.8 1.5 1 23 527 549 527 550 0.91 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF823-201 - 610 4.4e-49 160.9 146.5 16 17 1e-05 0.013 16.3 0.8 1 23 555 577 555 578 0.90 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF823-201 - 610 4.4e-49 160.9 146.5 17 17 8.4e-06 0.011 16.5 2.0 1 23 583 605 583 606 0.97 C2H2-type zinc finger zf-C2H2 PF00096.26 23 ZNF823-201 - 610 7.2e-48 158.5 160.5 1 19 6.2 7.9e+03 -2.3 0.1 13 20 60 67 59 69 0.79 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF823-201 - 610 7.2e-48 158.5 160.5 2 19 2.6 3.3e+03 -1.1 0.3 1 10 66 80 66 82 0.78 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF823-201 - 610 7.2e-48 158.5 160.5 3 19 3.5 4.5e+03 -1.5 0.3 7 21 142 156 142 156 0.83 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF823-201 - 610 7.2e-48 158.5 160.5 4 19 2.3e-07 0.00029 21.1 1.1 1 23 164 186 164 187 0.94 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF823-201 - 610 7.2e-48 158.5 160.5 5 19 2.7e-05 0.034 14.6 1.3 1 23 192 214 192 214 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF823-201 - 610 7.2e-48 158.5 160.5 6 19 5.7e-06 0.0073 16.7 1.6 1 23 220 242 220 242 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF823-201 - 610 7.2e-48 158.5 160.5 7 19 8.1e-07 0.001 19.4 1.6 1 23 248 270 248 270 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF823-201 - 610 7.2e-48 158.5 160.5 8 19 0.0054 6.9 7.3 5.3 1 23 276 298 276 298 0.93 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF823-201 - 610 7.2e-48 158.5 160.5 9 19 6.8e-06 0.0087 16.5 7.1 1 23 304 326 304 326 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF823-201 - 610 7.2e-48 158.5 160.5 10 19 0.0014 1.8 9.2 3.3 1 23 332 354 332 354 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF823-201 - 610 7.2e-48 158.5 160.5 11 19 2.2e-07 0.00028 21.2 2.6 1 23 360 382 360 382 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF823-201 - 610 7.2e-48 158.5 160.5 12 19 1.6e-05 0.02 15.3 1.9 2 23 389 410 388 410 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF823-201 - 610 7.2e-48 158.5 160.5 13 19 3.5e-07 0.00044 20.5 0.2 1 23 416 438 416 438 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF823-201 - 610 7.2e-48 158.5 160.5 14 19 0.00017 0.22 12.0 0.7 5 23 447 465 444 465 0.94 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF823-201 - 610 7.2e-48 158.5 160.5 15 19 0.00027 0.35 11.4 4.4 1 23 471 493 471 493 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF823-201 - 610 7.2e-48 158.5 160.5 16 19 4.1e-07 0.00053 20.3 3.1 1 23 499 521 499 521 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF823-201 - 610 7.2e-48 158.5 160.5 17 19 4e-05 0.052 14.0 0.9 1 23 527 549 527 549 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF823-201 - 610 7.2e-48 158.5 160.5 18 19 5.5e-06 0.007 16.8 0.9 1 23 555 577 555 577 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF823-201 - 610 7.2e-48 158.5 160.5 19 19 2.6e-06 0.0033 17.8 2.5 1 23 583 605 583 605 0.99 Zinc finger, C2H2 type zf-C2H2_6 PF13912.6 27 ZNF823-201 - 610 3.3e-23 81.2 144.8 1 18 1.6 2.1e+03 -1.1 0.0 5 12 74 81 74 82 0.87 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF823-201 - 610 3.3e-23 81.2 144.8 2 18 1.1 1.4e+03 -0.5 0.4 19 25 122 129 121 130 0.82 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF823-201 - 610 3.3e-23 81.2 144.8 3 18 1.5e-08 1.9e-05 24.5 1.3 2 25 164 187 164 188 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF823-201 - 610 3.3e-23 81.2 144.8 4 18 0.0062 7.9 6.6 0.6 2 11 192 201 192 202 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF823-201 - 610 3.3e-23 81.2 144.8 5 18 0.00093 1.2 9.2 2.1 2 12 220 230 220 234 0.91 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF823-201 - 610 3.3e-23 81.2 144.8 6 18 0.00011 0.15 12.1 0.5 1 12 247 258 247 261 0.90 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF823-201 - 610 3.3e-23 81.2 144.8 7 18 0.005 6.4 6.9 3.6 2 15 276 289 276 299 0.86 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF823-201 - 610 3.3e-23 81.2 144.8 8 18 0.0081 10 6.2 4.3 2 24 304 326 304 328 0.87 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF823-201 - 610 3.3e-23 81.2 144.8 9 18 0.0024 3.1 7.9 0.5 2 11 332 341 332 342 0.95 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF823-201 - 610 3.3e-23 81.2 144.8 10 18 0.00054 0.69 10.0 2.8 2 24 360 382 360 384 0.95 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF823-201 - 610 3.3e-23 81.2 144.8 11 18 0.0096 12 6.0 0.4 3 11 389 397 389 398 0.91 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF823-201 - 610 3.3e-23 81.2 144.8 12 18 0.00037 0.48 10.5 1.0 2 24 416 438 416 440 0.92 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF823-201 - 610 3.3e-23 81.2 144.8 13 18 1.7 2.1e+03 -1.1 0.6 6 12 447 453 444 465 0.76 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF823-201 - 610 3.3e-23 81.2 144.8 14 18 8.7e-05 0.11 12.5 6.8 2 24 471 493 471 494 0.98 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF823-201 - 610 3.3e-23 81.2 144.8 15 18 0.0031 4 7.6 1.7 2 21 499 518 499 524 0.82 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF823-201 - 610 3.3e-23 81.2 144.8 16 18 0.00032 0.41 10.7 0.4 2 12 527 537 527 548 0.91 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF823-201 - 610 3.3e-23 81.2 144.8 17 18 0.00025 0.32 11.1 1.3 2 24 555 577 555 580 0.95 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF823-201 - 610 3.3e-23 81.2 144.8 18 18 5.5e-09 7e-06 25.9 2.7 2 26 583 607 582 608 0.97 C2H2-type zinc finger KRAB PF01352.27 42 ZNF823-201 - 610 4.7e-21 74.1 0.1 1 1 6e-24 7.7e-21 73.5 0.1 1 39 3 41 3 44 0.95 KRAB box zf-C2H2_jaz PF12171.8 27 ZNF823-201 - 610 1.6e-12 47.3 97.8 1 17 1.6 2e+03 -0.8 0.7 12 22 146 156 143 156 0.80 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF823-201 - 610 1.6e-12 47.3 97.8 2 17 3.3e-05 0.042 14.1 0.0 2 21 164 183 163 184 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF823-201 - 610 1.6e-12 47.3 97.8 3 17 0.0079 10 6.6 0.2 2 24 192 214 191 214 0.87 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF823-201 - 610 1.6e-12 47.3 97.8 4 17 0.17 2.2e+02 2.3 0.5 2 11 220 229 219 240 0.85 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF823-201 - 610 1.6e-12 47.3 97.8 5 17 0.0014 1.8 9.0 0.7 2 24 248 270 247 270 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF823-201 - 610 1.6e-12 47.3 97.8 6 17 0.75 9.5e+02 0.3 0.3 2 12 276 286 275 286 0.88 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF823-201 - 610 1.6e-12 47.3 97.8 7 17 0.00094 1.2 9.5 0.9 2 21 304 323 303 324 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF823-201 - 610 1.6e-12 47.3 97.8 8 17 0.0012 1.6 9.1 0.5 2 24 332 354 331 354 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF823-201 - 610 1.6e-12 47.3 97.8 9 17 0.002 2.6 8.4 0.5 2 23 360 381 359 382 0.91 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF823-201 - 610 1.6e-12 47.3 97.8 10 17 0.0045 5.8 7.3 0.6 4 24 390 410 389 410 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF823-201 - 610 1.6e-12 47.3 97.8 11 17 0.066 85 3.6 0.1 4 23 418 437 415 438 0.88 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF823-201 - 610 1.6e-12 47.3 97.8 12 17 0.0054 6.9 7.1 1.2 7 24 448 465 446 465 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF823-201 - 610 1.6e-12 47.3 97.8 13 17 0.3 3.9e+02 1.5 2.6 2 12 471 481 470 493 0.81 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF823-201 - 610 1.6e-12 47.3 97.8 14 17 0.0021 2.7 8.4 0.8 2 22 499 519 498 519 0.91 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF823-201 - 610 1.6e-12 47.3 97.8 15 17 0.078 1e+02 3.4 0.2 2 12 527 537 526 537 0.88 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF823-201 - 610 1.6e-12 47.3 97.8 16 17 0.00044 0.57 10.5 0.1 2 24 555 577 554 577 0.95 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF823-201 - 610 1.6e-12 47.3 97.8 17 17 0.0019 2.5 8.5 0.4 2 24 583 605 582 606 0.94 Zinc-finger double-stranded RNA-binding Zn-ribbon_8 PF09723.10 40 ZNF823-201 - 610 3e-07 30.4 90.3 1 15 9.4 1.2e+04 -3.5 0.0 10 15 75 80 74 87 0.79 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF823-201 - 610 3e-07 30.4 90.3 2 15 0.0073 9.3 6.5 1.6 6 34 164 199 163 202 0.69 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF823-201 - 610 3e-07 30.4 90.3 3 15 0.0015 2 8.6 2.5 6 34 192 227 191 230 0.85 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF823-201 - 610 3e-07 30.4 90.3 4 15 0.43 5.6e+02 0.8 7.3 6 33 220 254 218 257 0.81 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF823-201 - 610 3e-07 30.4 90.3 5 15 0.12 1.5e+02 2.6 0.9 6 15 248 257 246 263 0.89 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF823-201 - 610 3e-07 30.4 90.3 6 15 0.0051 6.5 7.0 10.6 6 34 276 311 275 342 0.92 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF823-201 - 610 3e-07 30.4 90.3 7 15 0.049 62 3.8 5.4 7 34 333 367 331 367 0.76 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF823-201 - 610 3e-07 30.4 90.3 8 15 0.00052 0.67 10.1 1.0 6 34 360 395 359 398 0.74 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF823-201 - 610 3e-07 30.4 90.3 9 15 0.0025 3.3 7.9 0.1 6 18 416 428 414 439 0.78 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF823-201 - 610 3e-07 30.4 90.3 10 15 0.015 19 5.5 4.8 6 34 444 478 443 479 0.80 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF823-201 - 610 3e-07 30.4 90.3 11 15 0.052 66 3.7 8.3 6 33 471 505 470 507 0.71 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF823-201 - 610 3e-07 30.4 90.3 12 15 0.0022 2.8 8.1 6.1 6 34 499 534 497 537 0.82 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF823-201 - 610 3e-07 30.4 90.3 13 15 0.00028 0.36 11.0 5.1 6 38 527 566 525 568 0.89 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF823-201 - 610 3e-07 30.4 90.3 14 15 0.00018 0.23 11.6 2.5 6 36 555 592 554 595 0.69 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF823-201 - 610 3e-07 30.4 90.3 15 15 0.0044 5.7 7.2 0.2 6 23 583 600 582 605 0.82 Zinc ribbon domain # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF823-201.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF823-201.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF823-201.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF823-201.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF823-201.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:15:01 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF823-202.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF823-202.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF823-202.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF823-202.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF823-202.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:15:02 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- KRAB PF01352.27 42 ZNF823-203 - 67 1.2e-22 79.3 0.1 1 1 1.7e-26 1.5e-22 78.9 0.1 1 40 3 42 3 44 0.95 KRAB box # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF823-203.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF823-203.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF823-203.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF823-203.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF823-203.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:15:02 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF823-204.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF823-204.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF823-204.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF823-204.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF823-204.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:15:02 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF830-201.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF830-201.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF830-201.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF830-201.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF830-201.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:15:03 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF830-202.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF830-202.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF830-202.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF830-202.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF830-202.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:15:03 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZNF83-201 - 516 1.8e-105 341.0 119.1 1 16 1.3 6.1e+02 1.1 0.0 14 24 92 102 81 104 0.81 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF83-201 - 516 1.8e-105 341.0 119.1 2 16 3.1e-06 0.0015 18.9 1.2 3 25 109 131 107 132 0.89 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF83-201 - 516 1.8e-105 341.0 119.1 3 16 6.9e-11 3.3e-08 33.6 1.1 1 25 135 159 135 160 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF83-201 - 516 1.8e-105 341.0 119.1 4 16 7.9e-11 3.8e-08 33.4 1.2 1 25 163 187 163 188 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF83-201 - 516 1.8e-105 341.0 119.1 5 16 3.1e-10 1.5e-07 31.5 2.3 1 24 191 214 191 216 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF83-201 - 516 1.8e-105 341.0 119.1 6 16 7.8e-10 3.8e-07 30.3 1.4 1 25 219 243 219 244 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF83-201 - 516 1.8e-105 341.0 119.1 7 16 7.8e-10 3.8e-07 30.2 1.2 2 26 248 272 247 272 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF83-201 - 516 1.8e-105 341.0 119.1 8 16 8.1e-11 3.9e-08 33.4 2.4 1 26 275 300 275 300 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF83-201 - 516 1.8e-105 341.0 119.1 9 16 5.3e-10 2.6e-07 30.8 0.7 1 26 303 328 303 328 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF83-201 - 516 1.8e-105 341.0 119.1 10 16 6.8e-10 3.3e-07 30.4 0.3 1 25 331 355 331 356 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF83-201 - 516 1.8e-105 341.0 119.1 11 16 1.1e-09 5.2e-07 29.8 0.1 2 25 360 383 359 384 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF83-201 - 516 1.8e-105 341.0 119.1 12 16 7.9e-11 3.8e-08 33.4 1.9 1 25 387 411 387 412 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF83-201 - 516 1.8e-105 341.0 119.1 13 16 2.7e-08 1.3e-05 25.4 0.2 2 24 416 438 415 439 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF83-201 - 516 1.8e-105 341.0 119.1 14 16 1.4e-09 6.8e-07 29.4 1.9 2 25 444 467 443 467 0.89 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF83-201 - 516 1.8e-105 341.0 119.1 15 16 2e-06 0.00096 19.5 2.8 1 24 471 494 471 495 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF83-201 - 516 1.8e-105 341.0 119.1 16 16 0.02 9.8 6.8 0.2 2 14 500 512 499 516 0.84 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZNF83-201 - 516 1.9e-82 267.4 121.8 1 15 7.2 3.5e+03 -1.2 0.8 7 23 99 115 93 115 0.73 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF83-201 - 516 1.9e-82 267.4 121.8 2 15 3.4e-09 1.7e-06 28.2 0.5 1 23 121 143 121 143 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF83-201 - 516 1.9e-82 267.4 121.8 3 15 3.4e-07 0.00017 21.9 3.7 1 23 149 171 149 171 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF83-201 - 516 1.9e-82 267.4 121.8 4 15 6.2e-09 3e-06 27.4 0.9 1 23 177 199 177 199 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF83-201 - 516 1.9e-82 267.4 121.8 5 15 2.2e-06 0.0011 19.3 2.6 1 23 205 227 205 227 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF83-201 - 516 1.9e-82 267.4 121.8 6 15 1.5e-08 7.1e-06 26.2 0.3 1 23 233 255 233 255 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF83-201 - 516 1.9e-82 267.4 121.8 7 15 7e-07 0.00034 20.9 4.6 1 23 261 283 261 283 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF83-201 - 516 1.9e-82 267.4 121.8 8 15 3.7e-09 1.8e-06 28.1 1.5 1 23 289 311 289 311 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF83-201 - 516 1.9e-82 267.4 121.8 9 15 3.7e-09 1.8e-06 28.1 1.5 1 23 317 339 317 339 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF83-201 - 516 1.9e-82 267.4 121.8 10 15 8.5e-09 4.1e-06 26.9 0.3 1 23 345 367 345 367 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF83-201 - 516 1.9e-82 267.4 121.8 11 15 2.7e-08 1.3e-05 25.3 3.3 1 23 373 395 373 395 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF83-201 - 516 1.9e-82 267.4 121.8 12 15 2.6e-08 1.3e-05 25.4 0.4 1 23 401 423 401 423 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF83-201 - 516 1.9e-82 267.4 121.8 13 15 8.6e-07 0.00042 20.6 1.0 1 23 429 451 429 451 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF83-201 - 516 1.9e-82 267.4 121.8 14 15 2.7e-07 0.00013 22.2 1.5 1 23 457 479 457 479 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF83-201 - 516 1.9e-82 267.4 121.8 15 15 1.2e-07 5.6e-05 23.4 1.9 1 23 485 507 485 507 0.98 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZNF83-201 - 516 5.2e-48 157.5 107.1 1 14 1.1e-05 0.0052 17.5 0.4 1 23 121 143 121 144 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF83-201 - 516 5.2e-48 157.5 107.1 2 14 3.2e-05 0.016 16.0 2.6 1 23 149 171 149 172 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF83-201 - 516 5.2e-48 157.5 107.1 3 14 2.5e-05 0.012 16.4 0.8 1 23 177 199 177 200 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF83-201 - 516 5.2e-48 157.5 107.1 4 14 0.0002 0.097 13.6 2.0 1 23 205 227 205 228 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF83-201 - 516 5.2e-48 157.5 107.1 5 14 1.9e-05 0.0091 16.8 0.3 1 23 233 255 233 256 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF83-201 - 516 5.2e-48 157.5 107.1 6 14 0.00064 0.31 12.0 3.6 1 23 261 283 261 284 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF83-201 - 516 5.2e-48 157.5 107.1 7 14 2.7e-06 0.0013 19.4 1.7 1 23 289 311 289 312 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF83-201 - 516 5.2e-48 157.5 107.1 8 14 2.7e-06 0.0013 19.4 1.7 1 23 317 339 317 340 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF83-201 - 516 5.2e-48 157.5 107.1 9 14 9e-06 0.0043 17.8 0.2 1 23 345 367 345 368 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF83-201 - 516 5.2e-48 157.5 107.1 10 14 0.00017 0.084 13.8 2.4 1 23 373 395 373 396 0.90 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF83-201 - 516 5.2e-48 157.5 107.1 11 14 5e-06 0.0024 18.5 0.5 1 23 401 423 401 424 0.89 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF83-201 - 516 5.2e-48 157.5 107.1 12 14 6.8e-05 0.033 15.0 0.8 1 23 429 451 429 452 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF83-201 - 516 5.2e-48 157.5 107.1 13 14 0.00014 0.068 14.0 1.1 1 23 457 479 457 480 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF83-201 - 516 5.2e-48 157.5 107.1 14 14 5e-05 0.024 15.4 1.0 1 23 485 507 485 508 0.96 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF83-201 - 516 3.2e-21 74.8 123.3 1 15 3.4 1.7e+03 -0.8 0.1 1 12 92 103 92 105 0.78 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF83-201 - 516 3.2e-21 74.8 123.3 2 15 0.0012 0.6 10.2 0.3 2 22 121 141 120 145 0.84 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF83-201 - 516 3.2e-21 74.8 123.3 3 15 0.0096 4.7 7.3 5.5 2 13 149 160 149 170 0.74 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF83-201 - 516 3.2e-21 74.8 123.3 4 15 0.0016 0.77 9.8 2.9 2 14 177 189 177 199 0.79 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF83-201 - 516 3.2e-21 74.8 123.3 5 15 0.0025 1.2 9.2 4.5 2 21 205 224 205 227 0.76 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF83-201 - 516 3.2e-21 74.8 123.3 6 15 0.0013 0.64 10.1 0.4 2 12 233 243 233 252 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF83-201 - 516 3.2e-21 74.8 123.3 7 15 0.005 2.4 8.2 4.2 2 13 261 272 261 283 0.81 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF83-201 - 516 3.2e-21 74.8 123.3 8 15 0.0008 0.39 10.8 1.0 2 12 289 299 289 307 0.92 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF83-201 - 516 3.2e-21 74.8 123.3 9 15 0.0008 0.39 10.8 1.0 2 12 317 327 317 335 0.92 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF83-201 - 516 3.2e-21 74.8 123.3 10 15 0.00035 0.17 11.9 0.3 2 12 345 355 345 364 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF83-201 - 516 3.2e-21 74.8 123.3 11 15 0.032 15 5.7 4.6 2 12 373 383 373 394 0.92 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF83-201 - 516 3.2e-21 74.8 123.3 12 15 0.00033 0.16 12.0 0.8 2 12 401 411 401 412 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF83-201 - 516 3.2e-21 74.8 123.3 13 15 0.00015 0.074 13.1 0.8 1 22 428 449 428 453 0.79 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF83-201 - 516 3.2e-21 74.8 123.3 14 15 0.00036 0.18 11.9 1.0 2 21 457 476 457 481 0.87 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF83-201 - 516 3.2e-21 74.8 123.3 15 15 0.0018 0.89 9.6 1.2 1 12 484 495 484 495 0.92 C2H2-type zinc finger Zn-ribbon_8 PF09723.10 40 ZNF83-201 - 516 1.2e-19 70.1 76.7 1 15 0.073 35 4.6 0.8 5 15 120 130 92 133 0.52 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF83-201 - 516 1.2e-19 70.1 76.7 2 15 0.00033 0.16 12.1 2.4 5 34 120 156 119 156 0.92 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF83-201 - 516 1.2e-19 70.1 76.7 3 15 0.0012 0.56 10.4 0.3 6 20 149 163 148 171 0.84 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF83-201 - 516 1.2e-19 70.1 76.7 4 15 1.7e-05 0.0082 16.2 3.7 6 34 177 212 176 212 0.92 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF83-201 - 516 1.2e-19 70.1 76.7 5 15 0.00014 0.069 13.3 4.8 6 34 205 240 204 244 0.81 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF83-201 - 516 1.2e-19 70.1 76.7 6 15 0.0053 2.6 8.3 0.4 6 16 233 243 232 254 0.88 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF83-201 - 516 1.2e-19 70.1 76.7 7 15 3.9e-05 0.019 15.1 3.2 6 34 261 296 260 301 0.90 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF83-201 - 516 1.2e-19 70.1 76.7 8 15 0.003 1.5 9.0 0.4 6 17 289 300 288 307 0.86 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF83-201 - 516 1.2e-19 70.1 76.7 9 15 0.00023 0.11 12.6 4.6 6 34 317 352 316 356 0.84 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF83-201 - 516 1.2e-19 70.1 76.7 10 15 0.0059 2.9 8.1 5.3 6 33 345 379 344 380 0.77 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF83-201 - 516 1.2e-19 70.1 76.7 11 15 0.0034 1.6 8.9 5.9 6 34 373 408 371 412 0.89 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF83-201 - 516 1.2e-19 70.1 76.7 12 15 0.006 2.9 8.1 0.6 6 16 401 411 399 417 0.91 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF83-201 - 516 1.2e-19 70.1 76.7 13 15 0.00017 0.085 13.0 3.2 6 34 429 464 428 468 0.87 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF83-201 - 516 1.2e-19 70.1 76.7 14 15 0.012 6 7.1 0.3 6 19 457 470 455 479 0.81 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF83-201 - 516 1.2e-19 70.1 76.7 15 15 0.031 15 5.8 0.5 6 17 485 502 483 516 0.69 Zinc ribbon domain XPA_N PF01286.18 32 ZNF83-201 - 516 3.6e-15 55.7 46.1 1 14 0.23 1.1e+02 2.9 0.3 3 12 122 131 120 136 0.88 XPA protein N-terminal XPA_N PF01286.18 32 ZNF83-201 - 516 3.6e-15 55.7 46.1 2 14 0.044 21 5.2 0.1 3 12 150 159 148 166 0.89 XPA protein N-terminal XPA_N PF01286.18 32 ZNF83-201 - 516 3.6e-15 55.7 46.1 3 14 0.078 38 4.5 0.1 3 12 178 187 176 194 0.88 XPA protein N-terminal XPA_N PF01286.18 32 ZNF83-201 - 516 3.6e-15 55.7 46.1 4 14 0.044 21 5.3 0.1 3 12 206 215 204 222 0.89 XPA protein N-terminal XPA_N PF01286.18 32 ZNF83-201 - 516 3.6e-15 55.7 46.1 5 14 0.028 14 5.9 0.1 3 19 234 251 232 252 0.83 XPA protein N-terminal XPA_N PF01286.18 32 ZNF83-201 - 516 3.6e-15 55.7 46.1 6 14 2 9.5e+02 -0.0 0.1 3 11 262 270 259 273 0.65 XPA protein N-terminal XPA_N PF01286.18 32 ZNF83-201 - 516 3.6e-15 55.7 46.1 7 14 0.048 23 5.1 0.0 3 12 290 299 288 310 0.76 XPA protein N-terminal XPA_N PF01286.18 32 ZNF83-201 - 516 3.6e-15 55.7 46.1 8 14 0.048 23 5.1 0.0 3 12 318 327 316 338 0.76 XPA protein N-terminal XPA_N PF01286.18 32 ZNF83-201 - 516 3.6e-15 55.7 46.1 9 14 0.012 5.8 7.1 0.1 3 18 346 362 344 363 0.81 XPA protein N-terminal XPA_N PF01286.18 32 ZNF83-201 - 516 3.6e-15 55.7 46.1 10 14 0.0041 2 8.5 0.1 3 13 374 384 372 393 0.78 XPA protein N-terminal XPA_N PF01286.18 32 ZNF83-201 - 516 3.6e-15 55.7 46.1 11 14 0.0025 1.2 9.2 0.1 3 17 402 417 400 422 0.79 XPA protein N-terminal XPA_N PF01286.18 32 ZNF83-201 - 516 3.6e-15 55.7 46.1 12 14 0.082 40 4.4 0.1 3 11 430 438 428 444 0.87 XPA protein N-terminal XPA_N PF01286.18 32 ZNF83-201 - 516 3.6e-15 55.7 46.1 13 14 0.021 10 6.3 0.1 3 12 458 467 456 476 0.84 XPA protein N-terminal XPA_N PF01286.18 32 ZNF83-201 - 516 3.6e-15 55.7 46.1 14 14 0.003 1.5 9.0 0.1 3 18 486 502 485 505 0.85 XPA protein N-terminal zf-C2H2_jaz PF12171.8 27 ZNF83-201 - 516 7.3e-15 54.8 77.8 1 14 7e-05 0.034 14.5 0.8 1 22 120 141 120 141 0.95 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF83-201 - 516 7.3e-15 54.8 77.8 2 14 0.001 0.49 10.8 0.6 2 21 149 168 148 169 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF83-201 - 516 7.3e-15 54.8 77.8 3 14 0.047 23 5.4 0.6 2 22 177 197 176 197 0.90 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF83-201 - 516 7.3e-15 54.8 77.8 4 14 0.18 89 3.5 0.6 2 20 205 223 204 225 0.86 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF83-201 - 516 7.3e-15 54.8 77.8 5 14 0.085 41 4.6 0.1 2 21 233 252 232 253 0.91 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF83-201 - 516 7.3e-15 54.8 77.8 6 14 0.016 7.7 6.9 0.7 2 22 261 281 260 281 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF83-201 - 516 7.3e-15 54.8 77.8 7 14 0.00042 0.2 12.0 0.3 2 22 289 309 288 309 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF83-201 - 516 7.3e-15 54.8 77.8 8 14 0.00042 0.2 12.0 0.3 2 22 317 337 316 337 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF83-201 - 516 7.3e-15 54.8 77.8 9 14 0.0074 3.6 8.0 0.1 2 21 345 364 344 365 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF83-201 - 516 7.3e-15 54.8 77.8 10 14 0.0062 3 8.2 1.2 2 20 373 391 372 391 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF83-201 - 516 7.3e-15 54.8 77.8 11 14 0.11 51 4.3 0.4 2 18 401 417 400 421 0.76 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF83-201 - 516 7.3e-15 54.8 77.8 12 14 1.5 7.3e+02 0.6 0.1 2 11 429 438 428 447 0.91 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF83-201 - 516 7.3e-15 54.8 77.8 13 14 0.0058 2.8 8.3 0.1 2 20 457 475 456 475 0.96 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF83-201 - 516 7.3e-15 54.8 77.8 14 14 0.024 11 6.4 0.8 2 22 485 505 484 505 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_11 PF16622.5 29 ZNF83-201 - 516 2.5e-13 49.5 58.7 1 14 2.7 1.3e+03 -0.8 0.2 5 26 121 142 118 143 0.72 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF83-201 - 516 2.5e-13 49.5 58.7 2 14 0.028 13 5.6 0.3 5 26 149 170 146 171 0.92 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF83-201 - 516 2.5e-13 49.5 58.7 3 14 0.064 31 4.4 0.2 5 26 177 198 174 199 0.86 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF83-201 - 516 2.5e-13 49.5 58.7 4 14 0.054 26 4.7 0.3 5 26 205 226 202 227 0.88 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF83-201 - 516 2.5e-13 49.5 58.7 5 14 0.028 13 5.6 0.1 6 26 234 254 231 255 0.92 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF83-201 - 516 2.5e-13 49.5 58.7 6 14 1.2 5.6e+02 0.4 1.0 5 26 261 282 258 283 0.82 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF83-201 - 516 2.5e-13 49.5 58.7 7 14 0.00067 0.33 10.8 0.1 5 26 289 310 286 311 0.93 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF83-201 - 516 2.5e-13 49.5 58.7 8 14 0.00067 0.33 10.8 0.1 5 26 317 338 314 339 0.93 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF83-201 - 516 2.5e-13 49.5 58.7 9 14 0.0018 0.89 9.4 0.1 5 26 345 366 342 367 0.93 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF83-201 - 516 2.5e-13 49.5 58.7 10 14 0.3 1.5e+02 2.3 0.1 5 26 373 394 370 395 0.89 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF83-201 - 516 2.5e-13 49.5 58.7 11 14 0.039 19 5.1 0.0 5 26 401 422 398 423 0.86 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF83-201 - 516 2.5e-13 49.5 58.7 12 14 0.00044 0.21 11.4 0.1 4 26 428 450 426 451 0.93 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF83-201 - 516 2.5e-13 49.5 58.7 13 14 0.0007 0.34 10.7 0.2 5 26 457 478 454 479 0.91 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF83-201 - 516 2.5e-13 49.5 58.7 14 14 0.19 92 2.9 0.3 5 23 485 503 482 506 0.81 zinc-finger C2H2-type C1_1 PF00130.22 53 ZNF83-201 - 516 6e-13 48.5 72.8 1 12 4.9 2.4e+03 -1.5 0.2 14 39 73 103 63 105 0.60 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF83-201 - 516 6e-13 48.5 72.8 2 12 7.1e-05 0.034 14.0 4.0 1 40 111 160 111 167 0.91 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF83-201 - 516 6e-13 48.5 72.8 3 12 0.0001 0.048 13.5 2.5 7 40 172 216 163 219 0.85 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF83-201 - 516 6e-13 48.5 72.8 4 12 0.0003 0.15 12.0 2.1 6 40 228 272 219 276 0.86 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF83-201 - 516 6e-13 48.5 72.8 5 12 0.04 19 5.2 0.6 5 24 283 301 275 305 0.76 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF83-201 - 516 6e-13 48.5 72.8 6 12 0.0023 1.1 9.2 0.3 2 24 307 329 307 333 0.88 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF83-201 - 516 6e-13 48.5 72.8 7 12 0.00061 0.3 11.0 1.7 2 36 335 380 335 382 0.87 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF83-201 - 516 6e-13 48.5 72.8 8 12 0.0042 2 8.3 2.0 3 37 365 409 363 410 0.80 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF83-201 - 516 6e-13 48.5 72.8 9 12 0.00011 0.052 13.4 1.6 1 37 391 437 387 439 0.84 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF83-201 - 516 6e-13 48.5 72.8 10 12 0.0014 0.69 9.8 2.8 2 36 419 464 418 469 0.86 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF83-201 - 516 6e-13 48.5 72.8 11 12 0.0041 2 8.4 4.5 1 37 446 493 446 497 0.88 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF83-201 - 516 6e-13 48.5 72.8 12 12 0.098 47 4.0 1.3 4 22 478 502 475 516 0.62 Phorbol esters/diacylglycerol binding domain (C1 domain) zf_UBZ PF18439.1 32 ZNF83-201 - 516 1.5e-12 46.9 58.0 1 14 0.0098 4.7 6.9 0.1 2 21 120 140 119 140 0.87 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF83-201 - 516 1.5e-12 46.9 58.0 2 14 0.047 23 4.7 0.2 3 13 149 159 147 167 0.84 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF83-201 - 516 1.5e-12 46.9 58.0 3 14 0.021 10 5.8 0.3 3 20 177 195 175 196 0.77 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF83-201 - 516 1.5e-12 46.9 58.0 4 14 0.028 14 5.4 0.3 3 14 205 216 203 224 0.78 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF83-201 - 516 1.5e-12 46.9 58.0 5 14 0.025 12 5.6 0.1 3 15 233 245 231 252 0.83 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF83-201 - 516 1.5e-12 46.9 58.0 6 14 0.62 3e+02 1.1 0.4 3 20 261 279 259 280 0.77 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF83-201 - 516 1.5e-12 46.9 58.0 7 14 0.016 7.6 6.2 0.1 3 14 289 300 287 307 0.85 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF83-201 - 516 1.5e-12 46.9 58.0 8 14 0.016 7.6 6.2 0.1 3 14 317 328 315 335 0.85 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF83-201 - 516 1.5e-12 46.9 58.0 9 14 0.0094 4.6 6.9 0.1 3 16 345 359 343 364 0.78 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF83-201 - 516 1.5e-12 46.9 58.0 10 14 0.0066 3.2 7.4 0.6 3 15 373 385 371 392 0.80 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF83-201 - 516 1.5e-12 46.9 58.0 11 14 0.0018 0.88 9.2 0.1 3 15 401 413 399 417 0.86 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF83-201 - 516 1.5e-12 46.9 58.0 12 14 0.027 13 5.5 0.1 3 16 429 442 427 447 0.75 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF83-201 - 516 1.5e-12 46.9 58.0 13 14 0.019 9.1 6.0 0.1 3 18 457 473 455 476 0.79 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF83-201 - 516 1.5e-12 46.9 58.0 14 14 0.047 23 4.7 0.1 2 14 484 496 483 507 0.83 Ubiquitin-Binding Zinc Finger zinc_ribbon_15 PF17032.5 86 ZNF83-201 - 516 7.3e-12 45.9 57.9 1 9 0.0011 0.55 11.0 3.6 31 77 114 160 90 167 0.81 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF83-201 - 516 7.3e-12 45.9 57.9 2 9 0.001 0.5 11.1 2.0 32 76 171 215 166 220 0.86 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF83-201 - 516 7.3e-12 45.9 57.9 3 9 0.0014 0.67 10.8 2.0 31 78 198 245 191 248 0.85 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF83-201 - 516 7.3e-12 45.9 57.9 4 9 0.014 6.6 7.6 1.1 33 76 228 271 215 275 0.87 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF83-201 - 516 7.3e-12 45.9 57.9 5 9 0.013 6.2 7.6 4.7 30 78 253 301 235 304 0.78 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF83-201 - 516 7.3e-12 45.9 57.9 6 9 4.5e-05 0.022 15.5 1.1 26 78 305 357 303 362 0.91 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF83-201 - 516 7.3e-12 45.9 57.9 7 9 0.0012 0.6 10.9 2.1 35 78 370 413 362 418 0.86 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF83-201 - 516 7.3e-12 45.9 57.9 8 9 0.00011 0.055 14.2 0.8 29 76 420 467 415 475 0.89 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF83-201 - 516 7.3e-12 45.9 57.9 9 9 0.13 64 4.4 0.3 32 68 479 515 472 516 0.78 zinc-ribbon family HypA PF01155.19 112 ZNF83-201 - 516 3.6e-08 33.4 46.8 1 10 0.0014 0.68 10.0 1.5 64 95 114 157 90 163 0.79 Hydrogenase/urease nickel incorporation, metallochaperone, hypA HypA PF01155.19 112 ZNF83-201 - 516 3.6e-08 33.4 46.8 2 10 0.074 36 4.4 7.1 87 99 195 217 156 275 0.58 Hydrogenase/urease nickel incorporation, metallochaperone, hypA HypA PF01155.19 112 ZNF83-201 - 516 3.6e-08 33.4 46.8 3 10 0.0016 0.77 9.8 1.4 50 94 241 296 236 306 0.78 Hydrogenase/urease nickel incorporation, metallochaperone, hypA HypA PF01155.19 112 ZNF83-201 - 516 3.6e-08 33.4 46.8 4 10 0.0095 4.6 7.3 3.7 63 93 309 351 274 358 0.54 Hydrogenase/urease nickel incorporation, metallochaperone, hypA HypA PF01155.19 112 ZNF83-201 - 516 3.6e-08 33.4 46.8 5 10 0.0044 2.1 8.4 0.5 64 95 338 381 324 389 0.77 Hydrogenase/urease nickel incorporation, metallochaperone, hypA HypA PF01155.19 112 ZNF83-201 - 516 3.6e-08 33.4 46.8 6 10 0.0067 3.3 7.8 3.7 46 94 349 408 343 413 0.80 Hydrogenase/urease nickel incorporation, metallochaperone, hypA HypA PF01155.19 112 ZNF83-201 - 516 3.6e-08 33.4 46.8 7 10 0.005 2.4 8.2 0.6 64 94 394 436 381 441 0.79 Hydrogenase/urease nickel incorporation, metallochaperone, hypA HypA PF01155.19 112 ZNF83-201 - 516 3.6e-08 33.4 46.8 8 10 0.002 0.99 9.5 0.6 63 95 421 465 408 472 0.77 Hydrogenase/urease nickel incorporation, metallochaperone, hypA HypA PF01155.19 112 ZNF83-201 - 516 3.6e-08 33.4 46.8 9 10 0.0021 1 9.4 1.1 64 94 450 492 441 496 0.80 Hydrogenase/urease nickel incorporation, metallochaperone, hypA HypA PF01155.19 112 ZNF83-201 - 516 3.6e-08 33.4 46.8 10 10 0.22 1e+02 2.9 0.1 64 83 478 497 470 515 0.77 Hydrogenase/urease nickel incorporation, metallochaperone, hypA Zf_RING PF16744.5 73 ZNF83-201 - 516 4.2e-07 30.0 55.2 1 14 0.02 9.6 6.4 0.2 14 32 115 133 108 144 0.86 KIAA1045 RING finger Zf_RING PF16744.5 73 ZNF83-201 - 516 4.2e-07 30.0 55.2 2 14 0.0054 2.6 8.2 0.2 13 32 142 161 134 169 0.88 KIAA1045 RING finger Zf_RING PF16744.5 73 ZNF83-201 - 516 4.2e-07 30.0 55.2 3 14 0.19 90 3.3 0.1 13 31 170 188 163 196 0.87 KIAA1045 RING finger Zf_RING PF16744.5 73 ZNF83-201 - 516 4.2e-07 30.0 55.2 4 14 0.0054 2.6 8.2 0.3 13 32 198 217 187 227 0.86 KIAA1045 RING finger Zf_RING PF16744.5 73 ZNF83-201 - 516 4.2e-07 30.0 55.2 5 14 0.19 93 3.2 0.1 13 32 226 245 220 252 0.87 KIAA1045 RING finger Zf_RING PF16744.5 73 ZNF83-201 - 516 4.2e-07 30.0 55.2 6 14 0.00045 0.22 11.7 0.5 14 32 255 273 249 282 0.87 KIAA1045 RING finger Zf_RING PF16744.5 73 ZNF83-201 - 516 4.2e-07 30.0 55.2 7 14 0.11 55 4.0 0.1 13 32 282 302 276 309 0.84 KIAA1045 RING finger Zf_RING PF16744.5 73 ZNF83-201 - 516 4.2e-07 30.0 55.2 8 14 0.11 54 4.0 0.2 13 32 310 330 306 339 0.83 KIAA1045 RING finger Zf_RING PF16744.5 73 ZNF83-201 - 516 4.2e-07 30.0 55.2 9 14 0.28 1.4e+02 2.7 1.0 13 32 338 357 331 381 0.85 KIAA1045 RING finger Zf_RING PF16744.5 73 ZNF83-201 - 516 4.2e-07 30.0 55.2 10 14 2.2 1e+03 -0.1 0.1 15 31 368 384 364 390 0.78 KIAA1045 RING finger Zf_RING PF16744.5 73 ZNF83-201 - 516 4.2e-07 30.0 55.2 11 14 0.17 83 3.4 0.1 13 32 394 413 383 420 0.84 KIAA1045 RING finger Zf_RING PF16744.5 73 ZNF83-201 - 516 4.2e-07 30.0 55.2 12 14 0.13 62 3.8 0.1 13 30 422 439 420 455 0.79 KIAA1045 RING finger Zf_RING PF16744.5 73 ZNF83-201 - 516 4.2e-07 30.0 55.2 13 14 2.1 1e+03 -0.1 0.0 12 29 449 466 440 476 0.83 KIAA1045 RING finger Zf_RING PF16744.5 73 ZNF83-201 - 516 4.2e-07 30.0 55.2 14 14 0.32 1.5e+02 2.5 0.2 13 33 478 498 468 514 0.82 KIAA1045 RING finger # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF83-201.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF83-201.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF83-201.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF83-201.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF83-201.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:15:04 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZNF83-202 - 516 1.8e-105 341.0 119.1 1 16 1.3 6.1e+02 1.1 0.0 14 24 92 102 81 104 0.81 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF83-202 - 516 1.8e-105 341.0 119.1 2 16 3.1e-06 0.0015 18.9 1.2 3 25 109 131 107 132 0.89 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF83-202 - 516 1.8e-105 341.0 119.1 3 16 6.9e-11 3.3e-08 33.6 1.1 1 25 135 159 135 160 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF83-202 - 516 1.8e-105 341.0 119.1 4 16 7.9e-11 3.8e-08 33.4 1.2 1 25 163 187 163 188 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF83-202 - 516 1.8e-105 341.0 119.1 5 16 3.1e-10 1.5e-07 31.5 2.3 1 24 191 214 191 216 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF83-202 - 516 1.8e-105 341.0 119.1 6 16 7.8e-10 3.8e-07 30.3 1.4 1 25 219 243 219 244 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF83-202 - 516 1.8e-105 341.0 119.1 7 16 7.8e-10 3.8e-07 30.2 1.2 2 26 248 272 247 272 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF83-202 - 516 1.8e-105 341.0 119.1 8 16 8.1e-11 3.9e-08 33.4 2.4 1 26 275 300 275 300 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF83-202 - 516 1.8e-105 341.0 119.1 9 16 5.3e-10 2.6e-07 30.8 0.7 1 26 303 328 303 328 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF83-202 - 516 1.8e-105 341.0 119.1 10 16 6.8e-10 3.3e-07 30.4 0.3 1 25 331 355 331 356 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF83-202 - 516 1.8e-105 341.0 119.1 11 16 1.1e-09 5.2e-07 29.8 0.1 2 25 360 383 359 384 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF83-202 - 516 1.8e-105 341.0 119.1 12 16 7.9e-11 3.8e-08 33.4 1.9 1 25 387 411 387 412 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF83-202 - 516 1.8e-105 341.0 119.1 13 16 2.7e-08 1.3e-05 25.4 0.2 2 24 416 438 415 439 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF83-202 - 516 1.8e-105 341.0 119.1 14 16 1.4e-09 6.8e-07 29.4 1.9 2 25 444 467 443 467 0.89 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF83-202 - 516 1.8e-105 341.0 119.1 15 16 2e-06 0.00096 19.5 2.8 1 24 471 494 471 495 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF83-202 - 516 1.8e-105 341.0 119.1 16 16 0.02 9.8 6.8 0.2 2 14 500 512 499 516 0.84 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZNF83-202 - 516 1.9e-82 267.4 121.8 1 15 7.2 3.5e+03 -1.2 0.8 7 23 99 115 93 115 0.73 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF83-202 - 516 1.9e-82 267.4 121.8 2 15 3.4e-09 1.7e-06 28.2 0.5 1 23 121 143 121 143 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF83-202 - 516 1.9e-82 267.4 121.8 3 15 3.4e-07 0.00017 21.9 3.7 1 23 149 171 149 171 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF83-202 - 516 1.9e-82 267.4 121.8 4 15 6.2e-09 3e-06 27.4 0.9 1 23 177 199 177 199 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF83-202 - 516 1.9e-82 267.4 121.8 5 15 2.2e-06 0.0011 19.3 2.6 1 23 205 227 205 227 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF83-202 - 516 1.9e-82 267.4 121.8 6 15 1.5e-08 7.1e-06 26.2 0.3 1 23 233 255 233 255 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF83-202 - 516 1.9e-82 267.4 121.8 7 15 7e-07 0.00034 20.9 4.6 1 23 261 283 261 283 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF83-202 - 516 1.9e-82 267.4 121.8 8 15 3.7e-09 1.8e-06 28.1 1.5 1 23 289 311 289 311 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF83-202 - 516 1.9e-82 267.4 121.8 9 15 3.7e-09 1.8e-06 28.1 1.5 1 23 317 339 317 339 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF83-202 - 516 1.9e-82 267.4 121.8 10 15 8.5e-09 4.1e-06 26.9 0.3 1 23 345 367 345 367 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF83-202 - 516 1.9e-82 267.4 121.8 11 15 2.7e-08 1.3e-05 25.3 3.3 1 23 373 395 373 395 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF83-202 - 516 1.9e-82 267.4 121.8 12 15 2.6e-08 1.3e-05 25.4 0.4 1 23 401 423 401 423 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF83-202 - 516 1.9e-82 267.4 121.8 13 15 8.6e-07 0.00042 20.6 1.0 1 23 429 451 429 451 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF83-202 - 516 1.9e-82 267.4 121.8 14 15 2.7e-07 0.00013 22.2 1.5 1 23 457 479 457 479 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF83-202 - 516 1.9e-82 267.4 121.8 15 15 1.2e-07 5.6e-05 23.4 1.9 1 23 485 507 485 507 0.98 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZNF83-202 - 516 5.2e-48 157.5 107.1 1 14 1.1e-05 0.0052 17.5 0.4 1 23 121 143 121 144 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF83-202 - 516 5.2e-48 157.5 107.1 2 14 3.2e-05 0.016 16.0 2.6 1 23 149 171 149 172 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF83-202 - 516 5.2e-48 157.5 107.1 3 14 2.5e-05 0.012 16.4 0.8 1 23 177 199 177 200 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF83-202 - 516 5.2e-48 157.5 107.1 4 14 0.0002 0.097 13.6 2.0 1 23 205 227 205 228 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF83-202 - 516 5.2e-48 157.5 107.1 5 14 1.9e-05 0.0091 16.8 0.3 1 23 233 255 233 256 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF83-202 - 516 5.2e-48 157.5 107.1 6 14 0.00064 0.31 12.0 3.6 1 23 261 283 261 284 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF83-202 - 516 5.2e-48 157.5 107.1 7 14 2.7e-06 0.0013 19.4 1.7 1 23 289 311 289 312 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF83-202 - 516 5.2e-48 157.5 107.1 8 14 2.7e-06 0.0013 19.4 1.7 1 23 317 339 317 340 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF83-202 - 516 5.2e-48 157.5 107.1 9 14 9e-06 0.0043 17.8 0.2 1 23 345 367 345 368 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF83-202 - 516 5.2e-48 157.5 107.1 10 14 0.00017 0.084 13.8 2.4 1 23 373 395 373 396 0.90 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF83-202 - 516 5.2e-48 157.5 107.1 11 14 5e-06 0.0024 18.5 0.5 1 23 401 423 401 424 0.89 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF83-202 - 516 5.2e-48 157.5 107.1 12 14 6.8e-05 0.033 15.0 0.8 1 23 429 451 429 452 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF83-202 - 516 5.2e-48 157.5 107.1 13 14 0.00014 0.068 14.0 1.1 1 23 457 479 457 480 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF83-202 - 516 5.2e-48 157.5 107.1 14 14 5e-05 0.024 15.4 1.0 1 23 485 507 485 508 0.96 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF83-202 - 516 3.2e-21 74.8 123.3 1 15 3.4 1.7e+03 -0.8 0.1 1 12 92 103 92 105 0.78 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF83-202 - 516 3.2e-21 74.8 123.3 2 15 0.0012 0.6 10.2 0.3 2 22 121 141 120 145 0.84 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF83-202 - 516 3.2e-21 74.8 123.3 3 15 0.0096 4.7 7.3 5.5 2 13 149 160 149 170 0.74 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF83-202 - 516 3.2e-21 74.8 123.3 4 15 0.0016 0.77 9.8 2.9 2 14 177 189 177 199 0.79 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF83-202 - 516 3.2e-21 74.8 123.3 5 15 0.0025 1.2 9.2 4.5 2 21 205 224 205 227 0.76 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF83-202 - 516 3.2e-21 74.8 123.3 6 15 0.0013 0.64 10.1 0.4 2 12 233 243 233 252 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF83-202 - 516 3.2e-21 74.8 123.3 7 15 0.005 2.4 8.2 4.2 2 13 261 272 261 283 0.81 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF83-202 - 516 3.2e-21 74.8 123.3 8 15 0.0008 0.39 10.8 1.0 2 12 289 299 289 307 0.92 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF83-202 - 516 3.2e-21 74.8 123.3 9 15 0.0008 0.39 10.8 1.0 2 12 317 327 317 335 0.92 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF83-202 - 516 3.2e-21 74.8 123.3 10 15 0.00035 0.17 11.9 0.3 2 12 345 355 345 364 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF83-202 - 516 3.2e-21 74.8 123.3 11 15 0.032 15 5.7 4.6 2 12 373 383 373 394 0.92 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF83-202 - 516 3.2e-21 74.8 123.3 12 15 0.00033 0.16 12.0 0.8 2 12 401 411 401 412 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF83-202 - 516 3.2e-21 74.8 123.3 13 15 0.00015 0.074 13.1 0.8 1 22 428 449 428 453 0.79 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF83-202 - 516 3.2e-21 74.8 123.3 14 15 0.00036 0.18 11.9 1.0 2 21 457 476 457 481 0.87 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF83-202 - 516 3.2e-21 74.8 123.3 15 15 0.0018 0.89 9.6 1.2 1 12 484 495 484 495 0.92 C2H2-type zinc finger Zn-ribbon_8 PF09723.10 40 ZNF83-202 - 516 1.2e-19 70.1 76.7 1 15 0.073 35 4.6 0.8 5 15 120 130 92 133 0.52 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF83-202 - 516 1.2e-19 70.1 76.7 2 15 0.00033 0.16 12.1 2.4 5 34 120 156 119 156 0.92 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF83-202 - 516 1.2e-19 70.1 76.7 3 15 0.0012 0.56 10.4 0.3 6 20 149 163 148 171 0.84 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF83-202 - 516 1.2e-19 70.1 76.7 4 15 1.7e-05 0.0082 16.2 3.7 6 34 177 212 176 212 0.92 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF83-202 - 516 1.2e-19 70.1 76.7 5 15 0.00014 0.069 13.3 4.8 6 34 205 240 204 244 0.81 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF83-202 - 516 1.2e-19 70.1 76.7 6 15 0.0053 2.6 8.3 0.4 6 16 233 243 232 254 0.88 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF83-202 - 516 1.2e-19 70.1 76.7 7 15 3.9e-05 0.019 15.1 3.2 6 34 261 296 260 301 0.90 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF83-202 - 516 1.2e-19 70.1 76.7 8 15 0.003 1.5 9.0 0.4 6 17 289 300 288 307 0.86 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF83-202 - 516 1.2e-19 70.1 76.7 9 15 0.00023 0.11 12.6 4.6 6 34 317 352 316 356 0.84 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF83-202 - 516 1.2e-19 70.1 76.7 10 15 0.0059 2.9 8.1 5.3 6 33 345 379 344 380 0.77 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF83-202 - 516 1.2e-19 70.1 76.7 11 15 0.0034 1.6 8.9 5.9 6 34 373 408 371 412 0.89 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF83-202 - 516 1.2e-19 70.1 76.7 12 15 0.006 2.9 8.1 0.6 6 16 401 411 399 417 0.91 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF83-202 - 516 1.2e-19 70.1 76.7 13 15 0.00017 0.085 13.0 3.2 6 34 429 464 428 468 0.87 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF83-202 - 516 1.2e-19 70.1 76.7 14 15 0.012 6 7.1 0.3 6 19 457 470 455 479 0.81 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF83-202 - 516 1.2e-19 70.1 76.7 15 15 0.031 15 5.8 0.5 6 17 485 502 483 516 0.69 Zinc ribbon domain XPA_N PF01286.18 32 ZNF83-202 - 516 3.6e-15 55.7 46.1 1 14 0.23 1.1e+02 2.9 0.3 3 12 122 131 120 136 0.88 XPA protein N-terminal XPA_N PF01286.18 32 ZNF83-202 - 516 3.6e-15 55.7 46.1 2 14 0.044 21 5.2 0.1 3 12 150 159 148 166 0.89 XPA protein N-terminal XPA_N PF01286.18 32 ZNF83-202 - 516 3.6e-15 55.7 46.1 3 14 0.078 38 4.5 0.1 3 12 178 187 176 194 0.88 XPA protein N-terminal XPA_N PF01286.18 32 ZNF83-202 - 516 3.6e-15 55.7 46.1 4 14 0.044 21 5.3 0.1 3 12 206 215 204 222 0.89 XPA protein N-terminal XPA_N PF01286.18 32 ZNF83-202 - 516 3.6e-15 55.7 46.1 5 14 0.028 14 5.9 0.1 3 19 234 251 232 252 0.83 XPA protein N-terminal XPA_N PF01286.18 32 ZNF83-202 - 516 3.6e-15 55.7 46.1 6 14 2 9.5e+02 -0.0 0.1 3 11 262 270 259 273 0.65 XPA protein N-terminal XPA_N PF01286.18 32 ZNF83-202 - 516 3.6e-15 55.7 46.1 7 14 0.048 23 5.1 0.0 3 12 290 299 288 310 0.76 XPA protein N-terminal XPA_N PF01286.18 32 ZNF83-202 - 516 3.6e-15 55.7 46.1 8 14 0.048 23 5.1 0.0 3 12 318 327 316 338 0.76 XPA protein N-terminal XPA_N PF01286.18 32 ZNF83-202 - 516 3.6e-15 55.7 46.1 9 14 0.012 5.8 7.1 0.1 3 18 346 362 344 363 0.81 XPA protein N-terminal XPA_N PF01286.18 32 ZNF83-202 - 516 3.6e-15 55.7 46.1 10 14 0.0041 2 8.5 0.1 3 13 374 384 372 393 0.78 XPA protein N-terminal XPA_N PF01286.18 32 ZNF83-202 - 516 3.6e-15 55.7 46.1 11 14 0.0025 1.2 9.2 0.1 3 17 402 417 400 422 0.79 XPA protein N-terminal XPA_N PF01286.18 32 ZNF83-202 - 516 3.6e-15 55.7 46.1 12 14 0.082 40 4.4 0.1 3 11 430 438 428 444 0.87 XPA protein N-terminal XPA_N PF01286.18 32 ZNF83-202 - 516 3.6e-15 55.7 46.1 13 14 0.021 10 6.3 0.1 3 12 458 467 456 476 0.84 XPA protein N-terminal XPA_N PF01286.18 32 ZNF83-202 - 516 3.6e-15 55.7 46.1 14 14 0.003 1.5 9.0 0.1 3 18 486 502 485 505 0.85 XPA protein N-terminal zf-C2H2_jaz PF12171.8 27 ZNF83-202 - 516 7.3e-15 54.8 77.8 1 14 7e-05 0.034 14.5 0.8 1 22 120 141 120 141 0.95 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF83-202 - 516 7.3e-15 54.8 77.8 2 14 0.001 0.49 10.8 0.6 2 21 149 168 148 169 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF83-202 - 516 7.3e-15 54.8 77.8 3 14 0.047 23 5.4 0.6 2 22 177 197 176 197 0.90 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF83-202 - 516 7.3e-15 54.8 77.8 4 14 0.18 89 3.5 0.6 2 20 205 223 204 225 0.86 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF83-202 - 516 7.3e-15 54.8 77.8 5 14 0.085 41 4.6 0.1 2 21 233 252 232 253 0.91 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF83-202 - 516 7.3e-15 54.8 77.8 6 14 0.016 7.7 6.9 0.7 2 22 261 281 260 281 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF83-202 - 516 7.3e-15 54.8 77.8 7 14 0.00042 0.2 12.0 0.3 2 22 289 309 288 309 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF83-202 - 516 7.3e-15 54.8 77.8 8 14 0.00042 0.2 12.0 0.3 2 22 317 337 316 337 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF83-202 - 516 7.3e-15 54.8 77.8 9 14 0.0074 3.6 8.0 0.1 2 21 345 364 344 365 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF83-202 - 516 7.3e-15 54.8 77.8 10 14 0.0062 3 8.2 1.2 2 20 373 391 372 391 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF83-202 - 516 7.3e-15 54.8 77.8 11 14 0.11 51 4.3 0.4 2 18 401 417 400 421 0.76 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF83-202 - 516 7.3e-15 54.8 77.8 12 14 1.5 7.3e+02 0.6 0.1 2 11 429 438 428 447 0.91 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF83-202 - 516 7.3e-15 54.8 77.8 13 14 0.0058 2.8 8.3 0.1 2 20 457 475 456 475 0.96 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF83-202 - 516 7.3e-15 54.8 77.8 14 14 0.024 11 6.4 0.8 2 22 485 505 484 505 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_11 PF16622.5 29 ZNF83-202 - 516 2.5e-13 49.5 58.7 1 14 2.7 1.3e+03 -0.8 0.2 5 26 121 142 118 143 0.72 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF83-202 - 516 2.5e-13 49.5 58.7 2 14 0.028 13 5.6 0.3 5 26 149 170 146 171 0.92 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF83-202 - 516 2.5e-13 49.5 58.7 3 14 0.064 31 4.4 0.2 5 26 177 198 174 199 0.86 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF83-202 - 516 2.5e-13 49.5 58.7 4 14 0.054 26 4.7 0.3 5 26 205 226 202 227 0.88 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF83-202 - 516 2.5e-13 49.5 58.7 5 14 0.028 13 5.6 0.1 6 26 234 254 231 255 0.92 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF83-202 - 516 2.5e-13 49.5 58.7 6 14 1.2 5.6e+02 0.4 1.0 5 26 261 282 258 283 0.82 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF83-202 - 516 2.5e-13 49.5 58.7 7 14 0.00067 0.33 10.8 0.1 5 26 289 310 286 311 0.93 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF83-202 - 516 2.5e-13 49.5 58.7 8 14 0.00067 0.33 10.8 0.1 5 26 317 338 314 339 0.93 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF83-202 - 516 2.5e-13 49.5 58.7 9 14 0.0018 0.89 9.4 0.1 5 26 345 366 342 367 0.93 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF83-202 - 516 2.5e-13 49.5 58.7 10 14 0.3 1.5e+02 2.3 0.1 5 26 373 394 370 395 0.89 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF83-202 - 516 2.5e-13 49.5 58.7 11 14 0.039 19 5.1 0.0 5 26 401 422 398 423 0.86 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF83-202 - 516 2.5e-13 49.5 58.7 12 14 0.00044 0.21 11.4 0.1 4 26 428 450 426 451 0.93 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF83-202 - 516 2.5e-13 49.5 58.7 13 14 0.0007 0.34 10.7 0.2 5 26 457 478 454 479 0.91 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF83-202 - 516 2.5e-13 49.5 58.7 14 14 0.19 92 2.9 0.3 5 23 485 503 482 506 0.81 zinc-finger C2H2-type C1_1 PF00130.22 53 ZNF83-202 - 516 6e-13 48.5 72.8 1 12 4.9 2.4e+03 -1.5 0.2 14 39 73 103 63 105 0.60 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF83-202 - 516 6e-13 48.5 72.8 2 12 7.1e-05 0.034 14.0 4.0 1 40 111 160 111 167 0.91 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF83-202 - 516 6e-13 48.5 72.8 3 12 0.0001 0.048 13.5 2.5 7 40 172 216 163 219 0.85 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF83-202 - 516 6e-13 48.5 72.8 4 12 0.0003 0.15 12.0 2.1 6 40 228 272 219 276 0.86 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF83-202 - 516 6e-13 48.5 72.8 5 12 0.04 19 5.2 0.6 5 24 283 301 275 305 0.76 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF83-202 - 516 6e-13 48.5 72.8 6 12 0.0023 1.1 9.2 0.3 2 24 307 329 307 333 0.88 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF83-202 - 516 6e-13 48.5 72.8 7 12 0.00061 0.3 11.0 1.7 2 36 335 380 335 382 0.87 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF83-202 - 516 6e-13 48.5 72.8 8 12 0.0042 2 8.3 2.0 3 37 365 409 363 410 0.80 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF83-202 - 516 6e-13 48.5 72.8 9 12 0.00011 0.052 13.4 1.6 1 37 391 437 387 439 0.84 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF83-202 - 516 6e-13 48.5 72.8 10 12 0.0014 0.69 9.8 2.8 2 36 419 464 418 469 0.86 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF83-202 - 516 6e-13 48.5 72.8 11 12 0.0041 2 8.4 4.5 1 37 446 493 446 497 0.88 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF83-202 - 516 6e-13 48.5 72.8 12 12 0.098 47 4.0 1.3 4 22 478 502 475 516 0.62 Phorbol esters/diacylglycerol binding domain (C1 domain) zf_UBZ PF18439.1 32 ZNF83-202 - 516 1.5e-12 46.9 58.0 1 14 0.0098 4.7 6.9 0.1 2 21 120 140 119 140 0.87 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF83-202 - 516 1.5e-12 46.9 58.0 2 14 0.047 23 4.7 0.2 3 13 149 159 147 167 0.84 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF83-202 - 516 1.5e-12 46.9 58.0 3 14 0.021 10 5.8 0.3 3 20 177 195 175 196 0.77 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF83-202 - 516 1.5e-12 46.9 58.0 4 14 0.028 14 5.4 0.3 3 14 205 216 203 224 0.78 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF83-202 - 516 1.5e-12 46.9 58.0 5 14 0.025 12 5.6 0.1 3 15 233 245 231 252 0.83 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF83-202 - 516 1.5e-12 46.9 58.0 6 14 0.62 3e+02 1.1 0.4 3 20 261 279 259 280 0.77 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF83-202 - 516 1.5e-12 46.9 58.0 7 14 0.016 7.6 6.2 0.1 3 14 289 300 287 307 0.85 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF83-202 - 516 1.5e-12 46.9 58.0 8 14 0.016 7.6 6.2 0.1 3 14 317 328 315 335 0.85 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF83-202 - 516 1.5e-12 46.9 58.0 9 14 0.0094 4.6 6.9 0.1 3 16 345 359 343 364 0.78 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF83-202 - 516 1.5e-12 46.9 58.0 10 14 0.0066 3.2 7.4 0.6 3 15 373 385 371 392 0.80 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF83-202 - 516 1.5e-12 46.9 58.0 11 14 0.0018 0.88 9.2 0.1 3 15 401 413 399 417 0.86 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF83-202 - 516 1.5e-12 46.9 58.0 12 14 0.027 13 5.5 0.1 3 16 429 442 427 447 0.75 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF83-202 - 516 1.5e-12 46.9 58.0 13 14 0.019 9.1 6.0 0.1 3 18 457 473 455 476 0.79 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF83-202 - 516 1.5e-12 46.9 58.0 14 14 0.047 23 4.7 0.1 2 14 484 496 483 507 0.83 Ubiquitin-Binding Zinc Finger zinc_ribbon_15 PF17032.5 86 ZNF83-202 - 516 7.3e-12 45.9 57.9 1 9 0.0011 0.55 11.0 3.6 31 77 114 160 90 167 0.81 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF83-202 - 516 7.3e-12 45.9 57.9 2 9 0.001 0.5 11.1 2.0 32 76 171 215 166 220 0.86 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF83-202 - 516 7.3e-12 45.9 57.9 3 9 0.0014 0.67 10.8 2.0 31 78 198 245 191 248 0.85 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF83-202 - 516 7.3e-12 45.9 57.9 4 9 0.014 6.6 7.6 1.1 33 76 228 271 215 275 0.87 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF83-202 - 516 7.3e-12 45.9 57.9 5 9 0.013 6.2 7.6 4.7 30 78 253 301 235 304 0.78 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF83-202 - 516 7.3e-12 45.9 57.9 6 9 4.5e-05 0.022 15.5 1.1 26 78 305 357 303 362 0.91 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF83-202 - 516 7.3e-12 45.9 57.9 7 9 0.0012 0.6 10.9 2.1 35 78 370 413 362 418 0.86 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF83-202 - 516 7.3e-12 45.9 57.9 8 9 0.00011 0.055 14.2 0.8 29 76 420 467 415 475 0.89 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF83-202 - 516 7.3e-12 45.9 57.9 9 9 0.13 64 4.4 0.3 32 68 479 515 472 516 0.78 zinc-ribbon family HypA PF01155.19 112 ZNF83-202 - 516 3.6e-08 33.4 46.8 1 10 0.0014 0.68 10.0 1.5 64 95 114 157 90 163 0.79 Hydrogenase/urease nickel incorporation, metallochaperone, hypA HypA PF01155.19 112 ZNF83-202 - 516 3.6e-08 33.4 46.8 2 10 0.074 36 4.4 7.1 87 99 195 217 156 275 0.58 Hydrogenase/urease nickel incorporation, metallochaperone, hypA HypA PF01155.19 112 ZNF83-202 - 516 3.6e-08 33.4 46.8 3 10 0.0016 0.77 9.8 1.4 50 94 241 296 236 306 0.78 Hydrogenase/urease nickel incorporation, metallochaperone, hypA HypA PF01155.19 112 ZNF83-202 - 516 3.6e-08 33.4 46.8 4 10 0.0095 4.6 7.3 3.7 63 93 309 351 274 358 0.54 Hydrogenase/urease nickel incorporation, metallochaperone, hypA HypA PF01155.19 112 ZNF83-202 - 516 3.6e-08 33.4 46.8 5 10 0.0044 2.1 8.4 0.5 64 95 338 381 324 389 0.77 Hydrogenase/urease nickel incorporation, metallochaperone, hypA HypA PF01155.19 112 ZNF83-202 - 516 3.6e-08 33.4 46.8 6 10 0.0067 3.3 7.8 3.7 46 94 349 408 343 413 0.80 Hydrogenase/urease nickel incorporation, metallochaperone, hypA HypA PF01155.19 112 ZNF83-202 - 516 3.6e-08 33.4 46.8 7 10 0.005 2.4 8.2 0.6 64 94 394 436 381 441 0.79 Hydrogenase/urease nickel incorporation, metallochaperone, hypA HypA PF01155.19 112 ZNF83-202 - 516 3.6e-08 33.4 46.8 8 10 0.002 0.99 9.5 0.6 63 95 421 465 408 472 0.77 Hydrogenase/urease nickel incorporation, metallochaperone, hypA HypA PF01155.19 112 ZNF83-202 - 516 3.6e-08 33.4 46.8 9 10 0.0021 1 9.4 1.1 64 94 450 492 441 496 0.80 Hydrogenase/urease nickel incorporation, metallochaperone, hypA HypA PF01155.19 112 ZNF83-202 - 516 3.6e-08 33.4 46.8 10 10 0.22 1e+02 2.9 0.1 64 83 478 497 470 515 0.77 Hydrogenase/urease nickel incorporation, metallochaperone, hypA Zf_RING PF16744.5 73 ZNF83-202 - 516 4.2e-07 30.0 55.2 1 14 0.02 9.6 6.4 0.2 14 32 115 133 108 144 0.86 KIAA1045 RING finger Zf_RING PF16744.5 73 ZNF83-202 - 516 4.2e-07 30.0 55.2 2 14 0.0054 2.6 8.2 0.2 13 32 142 161 134 169 0.88 KIAA1045 RING finger Zf_RING PF16744.5 73 ZNF83-202 - 516 4.2e-07 30.0 55.2 3 14 0.19 90 3.3 0.1 13 31 170 188 163 196 0.87 KIAA1045 RING finger Zf_RING PF16744.5 73 ZNF83-202 - 516 4.2e-07 30.0 55.2 4 14 0.0054 2.6 8.2 0.3 13 32 198 217 187 227 0.86 KIAA1045 RING finger Zf_RING PF16744.5 73 ZNF83-202 - 516 4.2e-07 30.0 55.2 5 14 0.19 93 3.2 0.1 13 32 226 245 220 252 0.87 KIAA1045 RING finger Zf_RING PF16744.5 73 ZNF83-202 - 516 4.2e-07 30.0 55.2 6 14 0.00045 0.22 11.7 0.5 14 32 255 273 249 282 0.87 KIAA1045 RING finger Zf_RING PF16744.5 73 ZNF83-202 - 516 4.2e-07 30.0 55.2 7 14 0.11 55 4.0 0.1 13 32 282 302 276 309 0.84 KIAA1045 RING finger Zf_RING PF16744.5 73 ZNF83-202 - 516 4.2e-07 30.0 55.2 8 14 0.11 54 4.0 0.2 13 32 310 330 306 339 0.83 KIAA1045 RING finger Zf_RING PF16744.5 73 ZNF83-202 - 516 4.2e-07 30.0 55.2 9 14 0.28 1.4e+02 2.7 1.0 13 32 338 357 331 381 0.85 KIAA1045 RING finger Zf_RING PF16744.5 73 ZNF83-202 - 516 4.2e-07 30.0 55.2 10 14 2.2 1e+03 -0.1 0.1 15 31 368 384 364 390 0.78 KIAA1045 RING finger Zf_RING PF16744.5 73 ZNF83-202 - 516 4.2e-07 30.0 55.2 11 14 0.17 83 3.4 0.1 13 32 394 413 383 420 0.84 KIAA1045 RING finger Zf_RING PF16744.5 73 ZNF83-202 - 516 4.2e-07 30.0 55.2 12 14 0.13 62 3.8 0.1 13 30 422 439 420 455 0.79 KIAA1045 RING finger Zf_RING PF16744.5 73 ZNF83-202 - 516 4.2e-07 30.0 55.2 13 14 2.1 1e+03 -0.1 0.0 12 29 449 466 440 476 0.83 KIAA1045 RING finger Zf_RING PF16744.5 73 ZNF83-202 - 516 4.2e-07 30.0 55.2 14 14 0.32 1.5e+02 2.5 0.2 13 33 478 498 468 514 0.82 KIAA1045 RING finger # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF83-202.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF83-202.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF83-202.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF83-202.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF83-202.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:15:04 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZNF83-203 - 516 1.8e-105 341.0 119.1 1 16 1.3 6.1e+02 1.1 0.0 14 24 92 102 81 104 0.81 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF83-203 - 516 1.8e-105 341.0 119.1 2 16 3.1e-06 0.0015 18.9 1.2 3 25 109 131 107 132 0.89 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF83-203 - 516 1.8e-105 341.0 119.1 3 16 6.9e-11 3.3e-08 33.6 1.1 1 25 135 159 135 160 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF83-203 - 516 1.8e-105 341.0 119.1 4 16 7.9e-11 3.8e-08 33.4 1.2 1 25 163 187 163 188 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF83-203 - 516 1.8e-105 341.0 119.1 5 16 3.1e-10 1.5e-07 31.5 2.3 1 24 191 214 191 216 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF83-203 - 516 1.8e-105 341.0 119.1 6 16 7.8e-10 3.8e-07 30.3 1.4 1 25 219 243 219 244 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF83-203 - 516 1.8e-105 341.0 119.1 7 16 7.8e-10 3.8e-07 30.2 1.2 2 26 248 272 247 272 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF83-203 - 516 1.8e-105 341.0 119.1 8 16 8.1e-11 3.9e-08 33.4 2.4 1 26 275 300 275 300 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF83-203 - 516 1.8e-105 341.0 119.1 9 16 5.3e-10 2.6e-07 30.8 0.7 1 26 303 328 303 328 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF83-203 - 516 1.8e-105 341.0 119.1 10 16 6.8e-10 3.3e-07 30.4 0.3 1 25 331 355 331 356 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF83-203 - 516 1.8e-105 341.0 119.1 11 16 1.1e-09 5.2e-07 29.8 0.1 2 25 360 383 359 384 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF83-203 - 516 1.8e-105 341.0 119.1 12 16 7.9e-11 3.8e-08 33.4 1.9 1 25 387 411 387 412 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF83-203 - 516 1.8e-105 341.0 119.1 13 16 2.7e-08 1.3e-05 25.4 0.2 2 24 416 438 415 439 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF83-203 - 516 1.8e-105 341.0 119.1 14 16 1.4e-09 6.8e-07 29.4 1.9 2 25 444 467 443 467 0.89 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF83-203 - 516 1.8e-105 341.0 119.1 15 16 2e-06 0.00096 19.5 2.8 1 24 471 494 471 495 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF83-203 - 516 1.8e-105 341.0 119.1 16 16 0.02 9.8 6.8 0.2 2 14 500 512 499 516 0.84 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZNF83-203 - 516 1.9e-82 267.4 121.8 1 15 7.2 3.5e+03 -1.2 0.8 7 23 99 115 93 115 0.73 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF83-203 - 516 1.9e-82 267.4 121.8 2 15 3.4e-09 1.7e-06 28.2 0.5 1 23 121 143 121 143 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF83-203 - 516 1.9e-82 267.4 121.8 3 15 3.4e-07 0.00017 21.9 3.7 1 23 149 171 149 171 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF83-203 - 516 1.9e-82 267.4 121.8 4 15 6.2e-09 3e-06 27.4 0.9 1 23 177 199 177 199 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF83-203 - 516 1.9e-82 267.4 121.8 5 15 2.2e-06 0.0011 19.3 2.6 1 23 205 227 205 227 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF83-203 - 516 1.9e-82 267.4 121.8 6 15 1.5e-08 7.1e-06 26.2 0.3 1 23 233 255 233 255 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF83-203 - 516 1.9e-82 267.4 121.8 7 15 7e-07 0.00034 20.9 4.6 1 23 261 283 261 283 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF83-203 - 516 1.9e-82 267.4 121.8 8 15 3.7e-09 1.8e-06 28.1 1.5 1 23 289 311 289 311 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF83-203 - 516 1.9e-82 267.4 121.8 9 15 3.7e-09 1.8e-06 28.1 1.5 1 23 317 339 317 339 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF83-203 - 516 1.9e-82 267.4 121.8 10 15 8.5e-09 4.1e-06 26.9 0.3 1 23 345 367 345 367 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF83-203 - 516 1.9e-82 267.4 121.8 11 15 2.7e-08 1.3e-05 25.3 3.3 1 23 373 395 373 395 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF83-203 - 516 1.9e-82 267.4 121.8 12 15 2.6e-08 1.3e-05 25.4 0.4 1 23 401 423 401 423 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF83-203 - 516 1.9e-82 267.4 121.8 13 15 8.6e-07 0.00042 20.6 1.0 1 23 429 451 429 451 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF83-203 - 516 1.9e-82 267.4 121.8 14 15 2.7e-07 0.00013 22.2 1.5 1 23 457 479 457 479 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF83-203 - 516 1.9e-82 267.4 121.8 15 15 1.2e-07 5.6e-05 23.4 1.9 1 23 485 507 485 507 0.98 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZNF83-203 - 516 5.2e-48 157.5 107.1 1 14 1.1e-05 0.0052 17.5 0.4 1 23 121 143 121 144 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF83-203 - 516 5.2e-48 157.5 107.1 2 14 3.2e-05 0.016 16.0 2.6 1 23 149 171 149 172 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF83-203 - 516 5.2e-48 157.5 107.1 3 14 2.5e-05 0.012 16.4 0.8 1 23 177 199 177 200 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF83-203 - 516 5.2e-48 157.5 107.1 4 14 0.0002 0.097 13.6 2.0 1 23 205 227 205 228 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF83-203 - 516 5.2e-48 157.5 107.1 5 14 1.9e-05 0.0091 16.8 0.3 1 23 233 255 233 256 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF83-203 - 516 5.2e-48 157.5 107.1 6 14 0.00064 0.31 12.0 3.6 1 23 261 283 261 284 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF83-203 - 516 5.2e-48 157.5 107.1 7 14 2.7e-06 0.0013 19.4 1.7 1 23 289 311 289 312 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF83-203 - 516 5.2e-48 157.5 107.1 8 14 2.7e-06 0.0013 19.4 1.7 1 23 317 339 317 340 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF83-203 - 516 5.2e-48 157.5 107.1 9 14 9e-06 0.0043 17.8 0.2 1 23 345 367 345 368 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF83-203 - 516 5.2e-48 157.5 107.1 10 14 0.00017 0.084 13.8 2.4 1 23 373 395 373 396 0.90 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF83-203 - 516 5.2e-48 157.5 107.1 11 14 5e-06 0.0024 18.5 0.5 1 23 401 423 401 424 0.89 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF83-203 - 516 5.2e-48 157.5 107.1 12 14 6.8e-05 0.033 15.0 0.8 1 23 429 451 429 452 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF83-203 - 516 5.2e-48 157.5 107.1 13 14 0.00014 0.068 14.0 1.1 1 23 457 479 457 480 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF83-203 - 516 5.2e-48 157.5 107.1 14 14 5e-05 0.024 15.4 1.0 1 23 485 507 485 508 0.96 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF83-203 - 516 3.2e-21 74.8 123.3 1 15 3.4 1.7e+03 -0.8 0.1 1 12 92 103 92 105 0.78 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF83-203 - 516 3.2e-21 74.8 123.3 2 15 0.0012 0.6 10.2 0.3 2 22 121 141 120 145 0.84 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF83-203 - 516 3.2e-21 74.8 123.3 3 15 0.0096 4.7 7.3 5.5 2 13 149 160 149 170 0.74 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF83-203 - 516 3.2e-21 74.8 123.3 4 15 0.0016 0.77 9.8 2.9 2 14 177 189 177 199 0.79 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF83-203 - 516 3.2e-21 74.8 123.3 5 15 0.0025 1.2 9.2 4.5 2 21 205 224 205 227 0.76 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF83-203 - 516 3.2e-21 74.8 123.3 6 15 0.0013 0.64 10.1 0.4 2 12 233 243 233 252 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF83-203 - 516 3.2e-21 74.8 123.3 7 15 0.005 2.4 8.2 4.2 2 13 261 272 261 283 0.81 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF83-203 - 516 3.2e-21 74.8 123.3 8 15 0.0008 0.39 10.8 1.0 2 12 289 299 289 307 0.92 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF83-203 - 516 3.2e-21 74.8 123.3 9 15 0.0008 0.39 10.8 1.0 2 12 317 327 317 335 0.92 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF83-203 - 516 3.2e-21 74.8 123.3 10 15 0.00035 0.17 11.9 0.3 2 12 345 355 345 364 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF83-203 - 516 3.2e-21 74.8 123.3 11 15 0.032 15 5.7 4.6 2 12 373 383 373 394 0.92 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF83-203 - 516 3.2e-21 74.8 123.3 12 15 0.00033 0.16 12.0 0.8 2 12 401 411 401 412 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF83-203 - 516 3.2e-21 74.8 123.3 13 15 0.00015 0.074 13.1 0.8 1 22 428 449 428 453 0.79 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF83-203 - 516 3.2e-21 74.8 123.3 14 15 0.00036 0.18 11.9 1.0 2 21 457 476 457 481 0.87 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF83-203 - 516 3.2e-21 74.8 123.3 15 15 0.0018 0.89 9.6 1.2 1 12 484 495 484 495 0.92 C2H2-type zinc finger Zn-ribbon_8 PF09723.10 40 ZNF83-203 - 516 1.2e-19 70.1 76.7 1 15 0.073 35 4.6 0.8 5 15 120 130 92 133 0.52 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF83-203 - 516 1.2e-19 70.1 76.7 2 15 0.00033 0.16 12.1 2.4 5 34 120 156 119 156 0.92 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF83-203 - 516 1.2e-19 70.1 76.7 3 15 0.0012 0.56 10.4 0.3 6 20 149 163 148 171 0.84 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF83-203 - 516 1.2e-19 70.1 76.7 4 15 1.7e-05 0.0082 16.2 3.7 6 34 177 212 176 212 0.92 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF83-203 - 516 1.2e-19 70.1 76.7 5 15 0.00014 0.069 13.3 4.8 6 34 205 240 204 244 0.81 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF83-203 - 516 1.2e-19 70.1 76.7 6 15 0.0053 2.6 8.3 0.4 6 16 233 243 232 254 0.88 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF83-203 - 516 1.2e-19 70.1 76.7 7 15 3.9e-05 0.019 15.1 3.2 6 34 261 296 260 301 0.90 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF83-203 - 516 1.2e-19 70.1 76.7 8 15 0.003 1.5 9.0 0.4 6 17 289 300 288 307 0.86 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF83-203 - 516 1.2e-19 70.1 76.7 9 15 0.00023 0.11 12.6 4.6 6 34 317 352 316 356 0.84 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF83-203 - 516 1.2e-19 70.1 76.7 10 15 0.0059 2.9 8.1 5.3 6 33 345 379 344 380 0.77 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF83-203 - 516 1.2e-19 70.1 76.7 11 15 0.0034 1.6 8.9 5.9 6 34 373 408 371 412 0.89 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF83-203 - 516 1.2e-19 70.1 76.7 12 15 0.006 2.9 8.1 0.6 6 16 401 411 399 417 0.91 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF83-203 - 516 1.2e-19 70.1 76.7 13 15 0.00017 0.085 13.0 3.2 6 34 429 464 428 468 0.87 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF83-203 - 516 1.2e-19 70.1 76.7 14 15 0.012 6 7.1 0.3 6 19 457 470 455 479 0.81 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF83-203 - 516 1.2e-19 70.1 76.7 15 15 0.031 15 5.8 0.5 6 17 485 502 483 516 0.69 Zinc ribbon domain XPA_N PF01286.18 32 ZNF83-203 - 516 3.6e-15 55.7 46.1 1 14 0.23 1.1e+02 2.9 0.3 3 12 122 131 120 136 0.88 XPA protein N-terminal XPA_N PF01286.18 32 ZNF83-203 - 516 3.6e-15 55.7 46.1 2 14 0.044 21 5.2 0.1 3 12 150 159 148 166 0.89 XPA protein N-terminal XPA_N PF01286.18 32 ZNF83-203 - 516 3.6e-15 55.7 46.1 3 14 0.078 38 4.5 0.1 3 12 178 187 176 194 0.88 XPA protein N-terminal XPA_N PF01286.18 32 ZNF83-203 - 516 3.6e-15 55.7 46.1 4 14 0.044 21 5.3 0.1 3 12 206 215 204 222 0.89 XPA protein N-terminal XPA_N PF01286.18 32 ZNF83-203 - 516 3.6e-15 55.7 46.1 5 14 0.028 14 5.9 0.1 3 19 234 251 232 252 0.83 XPA protein N-terminal XPA_N PF01286.18 32 ZNF83-203 - 516 3.6e-15 55.7 46.1 6 14 2 9.5e+02 -0.0 0.1 3 11 262 270 259 273 0.65 XPA protein N-terminal XPA_N PF01286.18 32 ZNF83-203 - 516 3.6e-15 55.7 46.1 7 14 0.048 23 5.1 0.0 3 12 290 299 288 310 0.76 XPA protein N-terminal XPA_N PF01286.18 32 ZNF83-203 - 516 3.6e-15 55.7 46.1 8 14 0.048 23 5.1 0.0 3 12 318 327 316 338 0.76 XPA protein N-terminal XPA_N PF01286.18 32 ZNF83-203 - 516 3.6e-15 55.7 46.1 9 14 0.012 5.8 7.1 0.1 3 18 346 362 344 363 0.81 XPA protein N-terminal XPA_N PF01286.18 32 ZNF83-203 - 516 3.6e-15 55.7 46.1 10 14 0.0041 2 8.5 0.1 3 13 374 384 372 393 0.78 XPA protein N-terminal XPA_N PF01286.18 32 ZNF83-203 - 516 3.6e-15 55.7 46.1 11 14 0.0025 1.2 9.2 0.1 3 17 402 417 400 422 0.79 XPA protein N-terminal XPA_N PF01286.18 32 ZNF83-203 - 516 3.6e-15 55.7 46.1 12 14 0.082 40 4.4 0.1 3 11 430 438 428 444 0.87 XPA protein N-terminal XPA_N PF01286.18 32 ZNF83-203 - 516 3.6e-15 55.7 46.1 13 14 0.021 10 6.3 0.1 3 12 458 467 456 476 0.84 XPA protein N-terminal XPA_N PF01286.18 32 ZNF83-203 - 516 3.6e-15 55.7 46.1 14 14 0.003 1.5 9.0 0.1 3 18 486 502 485 505 0.85 XPA protein N-terminal zf-C2H2_jaz PF12171.8 27 ZNF83-203 - 516 7.3e-15 54.8 77.8 1 14 7e-05 0.034 14.5 0.8 1 22 120 141 120 141 0.95 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF83-203 - 516 7.3e-15 54.8 77.8 2 14 0.001 0.49 10.8 0.6 2 21 149 168 148 169 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF83-203 - 516 7.3e-15 54.8 77.8 3 14 0.047 23 5.4 0.6 2 22 177 197 176 197 0.90 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF83-203 - 516 7.3e-15 54.8 77.8 4 14 0.18 89 3.5 0.6 2 20 205 223 204 225 0.86 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF83-203 - 516 7.3e-15 54.8 77.8 5 14 0.085 41 4.6 0.1 2 21 233 252 232 253 0.91 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF83-203 - 516 7.3e-15 54.8 77.8 6 14 0.016 7.7 6.9 0.7 2 22 261 281 260 281 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF83-203 - 516 7.3e-15 54.8 77.8 7 14 0.00042 0.2 12.0 0.3 2 22 289 309 288 309 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF83-203 - 516 7.3e-15 54.8 77.8 8 14 0.00042 0.2 12.0 0.3 2 22 317 337 316 337 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF83-203 - 516 7.3e-15 54.8 77.8 9 14 0.0074 3.6 8.0 0.1 2 21 345 364 344 365 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF83-203 - 516 7.3e-15 54.8 77.8 10 14 0.0062 3 8.2 1.2 2 20 373 391 372 391 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF83-203 - 516 7.3e-15 54.8 77.8 11 14 0.11 51 4.3 0.4 2 18 401 417 400 421 0.76 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF83-203 - 516 7.3e-15 54.8 77.8 12 14 1.5 7.3e+02 0.6 0.1 2 11 429 438 428 447 0.91 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF83-203 - 516 7.3e-15 54.8 77.8 13 14 0.0058 2.8 8.3 0.1 2 20 457 475 456 475 0.96 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF83-203 - 516 7.3e-15 54.8 77.8 14 14 0.024 11 6.4 0.8 2 22 485 505 484 505 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_11 PF16622.5 29 ZNF83-203 - 516 2.5e-13 49.5 58.7 1 14 2.7 1.3e+03 -0.8 0.2 5 26 121 142 118 143 0.72 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF83-203 - 516 2.5e-13 49.5 58.7 2 14 0.028 13 5.6 0.3 5 26 149 170 146 171 0.92 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF83-203 - 516 2.5e-13 49.5 58.7 3 14 0.064 31 4.4 0.2 5 26 177 198 174 199 0.86 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF83-203 - 516 2.5e-13 49.5 58.7 4 14 0.054 26 4.7 0.3 5 26 205 226 202 227 0.88 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF83-203 - 516 2.5e-13 49.5 58.7 5 14 0.028 13 5.6 0.1 6 26 234 254 231 255 0.92 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF83-203 - 516 2.5e-13 49.5 58.7 6 14 1.2 5.6e+02 0.4 1.0 5 26 261 282 258 283 0.82 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF83-203 - 516 2.5e-13 49.5 58.7 7 14 0.00067 0.33 10.8 0.1 5 26 289 310 286 311 0.93 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF83-203 - 516 2.5e-13 49.5 58.7 8 14 0.00067 0.33 10.8 0.1 5 26 317 338 314 339 0.93 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF83-203 - 516 2.5e-13 49.5 58.7 9 14 0.0018 0.89 9.4 0.1 5 26 345 366 342 367 0.93 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF83-203 - 516 2.5e-13 49.5 58.7 10 14 0.3 1.5e+02 2.3 0.1 5 26 373 394 370 395 0.89 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF83-203 - 516 2.5e-13 49.5 58.7 11 14 0.039 19 5.1 0.0 5 26 401 422 398 423 0.86 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF83-203 - 516 2.5e-13 49.5 58.7 12 14 0.00044 0.21 11.4 0.1 4 26 428 450 426 451 0.93 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF83-203 - 516 2.5e-13 49.5 58.7 13 14 0.0007 0.34 10.7 0.2 5 26 457 478 454 479 0.91 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF83-203 - 516 2.5e-13 49.5 58.7 14 14 0.19 92 2.9 0.3 5 23 485 503 482 506 0.81 zinc-finger C2H2-type C1_1 PF00130.22 53 ZNF83-203 - 516 6e-13 48.5 72.8 1 12 4.9 2.4e+03 -1.5 0.2 14 39 73 103 63 105 0.60 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF83-203 - 516 6e-13 48.5 72.8 2 12 7.1e-05 0.034 14.0 4.0 1 40 111 160 111 167 0.91 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF83-203 - 516 6e-13 48.5 72.8 3 12 0.0001 0.048 13.5 2.5 7 40 172 216 163 219 0.85 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF83-203 - 516 6e-13 48.5 72.8 4 12 0.0003 0.15 12.0 2.1 6 40 228 272 219 276 0.86 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF83-203 - 516 6e-13 48.5 72.8 5 12 0.04 19 5.2 0.6 5 24 283 301 275 305 0.76 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF83-203 - 516 6e-13 48.5 72.8 6 12 0.0023 1.1 9.2 0.3 2 24 307 329 307 333 0.88 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF83-203 - 516 6e-13 48.5 72.8 7 12 0.00061 0.3 11.0 1.7 2 36 335 380 335 382 0.87 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF83-203 - 516 6e-13 48.5 72.8 8 12 0.0042 2 8.3 2.0 3 37 365 409 363 410 0.80 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF83-203 - 516 6e-13 48.5 72.8 9 12 0.00011 0.052 13.4 1.6 1 37 391 437 387 439 0.84 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF83-203 - 516 6e-13 48.5 72.8 10 12 0.0014 0.69 9.8 2.8 2 36 419 464 418 469 0.86 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF83-203 - 516 6e-13 48.5 72.8 11 12 0.0041 2 8.4 4.5 1 37 446 493 446 497 0.88 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF83-203 - 516 6e-13 48.5 72.8 12 12 0.098 47 4.0 1.3 4 22 478 502 475 516 0.62 Phorbol esters/diacylglycerol binding domain (C1 domain) zf_UBZ PF18439.1 32 ZNF83-203 - 516 1.5e-12 46.9 58.0 1 14 0.0098 4.7 6.9 0.1 2 21 120 140 119 140 0.87 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF83-203 - 516 1.5e-12 46.9 58.0 2 14 0.047 23 4.7 0.2 3 13 149 159 147 167 0.84 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF83-203 - 516 1.5e-12 46.9 58.0 3 14 0.021 10 5.8 0.3 3 20 177 195 175 196 0.77 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF83-203 - 516 1.5e-12 46.9 58.0 4 14 0.028 14 5.4 0.3 3 14 205 216 203 224 0.78 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF83-203 - 516 1.5e-12 46.9 58.0 5 14 0.025 12 5.6 0.1 3 15 233 245 231 252 0.83 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF83-203 - 516 1.5e-12 46.9 58.0 6 14 0.62 3e+02 1.1 0.4 3 20 261 279 259 280 0.77 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF83-203 - 516 1.5e-12 46.9 58.0 7 14 0.016 7.6 6.2 0.1 3 14 289 300 287 307 0.85 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF83-203 - 516 1.5e-12 46.9 58.0 8 14 0.016 7.6 6.2 0.1 3 14 317 328 315 335 0.85 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF83-203 - 516 1.5e-12 46.9 58.0 9 14 0.0094 4.6 6.9 0.1 3 16 345 359 343 364 0.78 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF83-203 - 516 1.5e-12 46.9 58.0 10 14 0.0066 3.2 7.4 0.6 3 15 373 385 371 392 0.80 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF83-203 - 516 1.5e-12 46.9 58.0 11 14 0.0018 0.88 9.2 0.1 3 15 401 413 399 417 0.86 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF83-203 - 516 1.5e-12 46.9 58.0 12 14 0.027 13 5.5 0.1 3 16 429 442 427 447 0.75 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF83-203 - 516 1.5e-12 46.9 58.0 13 14 0.019 9.1 6.0 0.1 3 18 457 473 455 476 0.79 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF83-203 - 516 1.5e-12 46.9 58.0 14 14 0.047 23 4.7 0.1 2 14 484 496 483 507 0.83 Ubiquitin-Binding Zinc Finger zinc_ribbon_15 PF17032.5 86 ZNF83-203 - 516 7.3e-12 45.9 57.9 1 9 0.0011 0.55 11.0 3.6 31 77 114 160 90 167 0.81 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF83-203 - 516 7.3e-12 45.9 57.9 2 9 0.001 0.5 11.1 2.0 32 76 171 215 166 220 0.86 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF83-203 - 516 7.3e-12 45.9 57.9 3 9 0.0014 0.67 10.8 2.0 31 78 198 245 191 248 0.85 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF83-203 - 516 7.3e-12 45.9 57.9 4 9 0.014 6.6 7.6 1.1 33 76 228 271 215 275 0.87 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF83-203 - 516 7.3e-12 45.9 57.9 5 9 0.013 6.2 7.6 4.7 30 78 253 301 235 304 0.78 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF83-203 - 516 7.3e-12 45.9 57.9 6 9 4.5e-05 0.022 15.5 1.1 26 78 305 357 303 362 0.91 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF83-203 - 516 7.3e-12 45.9 57.9 7 9 0.0012 0.6 10.9 2.1 35 78 370 413 362 418 0.86 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF83-203 - 516 7.3e-12 45.9 57.9 8 9 0.00011 0.055 14.2 0.8 29 76 420 467 415 475 0.89 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF83-203 - 516 7.3e-12 45.9 57.9 9 9 0.13 64 4.4 0.3 32 68 479 515 472 516 0.78 zinc-ribbon family HypA PF01155.19 112 ZNF83-203 - 516 3.6e-08 33.4 46.8 1 10 0.0014 0.68 10.0 1.5 64 95 114 157 90 163 0.79 Hydrogenase/urease nickel incorporation, metallochaperone, hypA HypA PF01155.19 112 ZNF83-203 - 516 3.6e-08 33.4 46.8 2 10 0.074 36 4.4 7.1 87 99 195 217 156 275 0.58 Hydrogenase/urease nickel incorporation, metallochaperone, hypA HypA PF01155.19 112 ZNF83-203 - 516 3.6e-08 33.4 46.8 3 10 0.0016 0.77 9.8 1.4 50 94 241 296 236 306 0.78 Hydrogenase/urease nickel incorporation, metallochaperone, hypA HypA PF01155.19 112 ZNF83-203 - 516 3.6e-08 33.4 46.8 4 10 0.0095 4.6 7.3 3.7 63 93 309 351 274 358 0.54 Hydrogenase/urease nickel incorporation, metallochaperone, hypA HypA PF01155.19 112 ZNF83-203 - 516 3.6e-08 33.4 46.8 5 10 0.0044 2.1 8.4 0.5 64 95 338 381 324 389 0.77 Hydrogenase/urease nickel incorporation, metallochaperone, hypA HypA PF01155.19 112 ZNF83-203 - 516 3.6e-08 33.4 46.8 6 10 0.0067 3.3 7.8 3.7 46 94 349 408 343 413 0.80 Hydrogenase/urease nickel incorporation, metallochaperone, hypA HypA PF01155.19 112 ZNF83-203 - 516 3.6e-08 33.4 46.8 7 10 0.005 2.4 8.2 0.6 64 94 394 436 381 441 0.79 Hydrogenase/urease nickel incorporation, metallochaperone, hypA HypA PF01155.19 112 ZNF83-203 - 516 3.6e-08 33.4 46.8 8 10 0.002 0.99 9.5 0.6 63 95 421 465 408 472 0.77 Hydrogenase/urease nickel incorporation, metallochaperone, hypA HypA PF01155.19 112 ZNF83-203 - 516 3.6e-08 33.4 46.8 9 10 0.0021 1 9.4 1.1 64 94 450 492 441 496 0.80 Hydrogenase/urease nickel incorporation, metallochaperone, hypA HypA PF01155.19 112 ZNF83-203 - 516 3.6e-08 33.4 46.8 10 10 0.22 1e+02 2.9 0.1 64 83 478 497 470 515 0.77 Hydrogenase/urease nickel incorporation, metallochaperone, hypA Zf_RING PF16744.5 73 ZNF83-203 - 516 4.2e-07 30.0 55.2 1 14 0.02 9.6 6.4 0.2 14 32 115 133 108 144 0.86 KIAA1045 RING finger Zf_RING PF16744.5 73 ZNF83-203 - 516 4.2e-07 30.0 55.2 2 14 0.0054 2.6 8.2 0.2 13 32 142 161 134 169 0.88 KIAA1045 RING finger Zf_RING PF16744.5 73 ZNF83-203 - 516 4.2e-07 30.0 55.2 3 14 0.19 90 3.3 0.1 13 31 170 188 163 196 0.87 KIAA1045 RING finger Zf_RING PF16744.5 73 ZNF83-203 - 516 4.2e-07 30.0 55.2 4 14 0.0054 2.6 8.2 0.3 13 32 198 217 187 227 0.86 KIAA1045 RING finger Zf_RING PF16744.5 73 ZNF83-203 - 516 4.2e-07 30.0 55.2 5 14 0.19 93 3.2 0.1 13 32 226 245 220 252 0.87 KIAA1045 RING finger Zf_RING PF16744.5 73 ZNF83-203 - 516 4.2e-07 30.0 55.2 6 14 0.00045 0.22 11.7 0.5 14 32 255 273 249 282 0.87 KIAA1045 RING finger Zf_RING PF16744.5 73 ZNF83-203 - 516 4.2e-07 30.0 55.2 7 14 0.11 55 4.0 0.1 13 32 282 302 276 309 0.84 KIAA1045 RING finger Zf_RING PF16744.5 73 ZNF83-203 - 516 4.2e-07 30.0 55.2 8 14 0.11 54 4.0 0.2 13 32 310 330 306 339 0.83 KIAA1045 RING finger Zf_RING PF16744.5 73 ZNF83-203 - 516 4.2e-07 30.0 55.2 9 14 0.28 1.4e+02 2.7 1.0 13 32 338 357 331 381 0.85 KIAA1045 RING finger Zf_RING PF16744.5 73 ZNF83-203 - 516 4.2e-07 30.0 55.2 10 14 2.2 1e+03 -0.1 0.1 15 31 368 384 364 390 0.78 KIAA1045 RING finger Zf_RING PF16744.5 73 ZNF83-203 - 516 4.2e-07 30.0 55.2 11 14 0.17 83 3.4 0.1 13 32 394 413 383 420 0.84 KIAA1045 RING finger Zf_RING PF16744.5 73 ZNF83-203 - 516 4.2e-07 30.0 55.2 12 14 0.13 62 3.8 0.1 13 30 422 439 420 455 0.79 KIAA1045 RING finger Zf_RING PF16744.5 73 ZNF83-203 - 516 4.2e-07 30.0 55.2 13 14 2.1 1e+03 -0.1 0.0 12 29 449 466 440 476 0.83 KIAA1045 RING finger Zf_RING PF16744.5 73 ZNF83-203 - 516 4.2e-07 30.0 55.2 14 14 0.32 1.5e+02 2.5 0.2 13 33 478 498 468 514 0.82 KIAA1045 RING finger # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF83-203.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF83-203.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF83-203.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF83-203.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF83-203.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:15:05 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZNF83-204 - 516 1.8e-105 341.0 119.1 1 16 1.3 6.1e+02 1.1 0.0 14 24 92 102 81 104 0.81 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF83-204 - 516 1.8e-105 341.0 119.1 2 16 3.1e-06 0.0015 18.9 1.2 3 25 109 131 107 132 0.89 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF83-204 - 516 1.8e-105 341.0 119.1 3 16 6.9e-11 3.3e-08 33.6 1.1 1 25 135 159 135 160 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF83-204 - 516 1.8e-105 341.0 119.1 4 16 7.9e-11 3.8e-08 33.4 1.2 1 25 163 187 163 188 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF83-204 - 516 1.8e-105 341.0 119.1 5 16 3.1e-10 1.5e-07 31.5 2.3 1 24 191 214 191 216 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF83-204 - 516 1.8e-105 341.0 119.1 6 16 7.8e-10 3.8e-07 30.3 1.4 1 25 219 243 219 244 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF83-204 - 516 1.8e-105 341.0 119.1 7 16 7.8e-10 3.8e-07 30.2 1.2 2 26 248 272 247 272 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF83-204 - 516 1.8e-105 341.0 119.1 8 16 8.1e-11 3.9e-08 33.4 2.4 1 26 275 300 275 300 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF83-204 - 516 1.8e-105 341.0 119.1 9 16 5.3e-10 2.6e-07 30.8 0.7 1 26 303 328 303 328 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF83-204 - 516 1.8e-105 341.0 119.1 10 16 6.8e-10 3.3e-07 30.4 0.3 1 25 331 355 331 356 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF83-204 - 516 1.8e-105 341.0 119.1 11 16 1.1e-09 5.2e-07 29.8 0.1 2 25 360 383 359 384 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF83-204 - 516 1.8e-105 341.0 119.1 12 16 7.9e-11 3.8e-08 33.4 1.9 1 25 387 411 387 412 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF83-204 - 516 1.8e-105 341.0 119.1 13 16 2.7e-08 1.3e-05 25.4 0.2 2 24 416 438 415 439 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF83-204 - 516 1.8e-105 341.0 119.1 14 16 1.4e-09 6.8e-07 29.4 1.9 2 25 444 467 443 467 0.89 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF83-204 - 516 1.8e-105 341.0 119.1 15 16 2e-06 0.00096 19.5 2.8 1 24 471 494 471 495 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF83-204 - 516 1.8e-105 341.0 119.1 16 16 0.02 9.8 6.8 0.2 2 14 500 512 499 516 0.84 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZNF83-204 - 516 1.9e-82 267.4 121.8 1 15 7.2 3.5e+03 -1.2 0.8 7 23 99 115 93 115 0.73 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF83-204 - 516 1.9e-82 267.4 121.8 2 15 3.4e-09 1.7e-06 28.2 0.5 1 23 121 143 121 143 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF83-204 - 516 1.9e-82 267.4 121.8 3 15 3.4e-07 0.00017 21.9 3.7 1 23 149 171 149 171 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF83-204 - 516 1.9e-82 267.4 121.8 4 15 6.2e-09 3e-06 27.4 0.9 1 23 177 199 177 199 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF83-204 - 516 1.9e-82 267.4 121.8 5 15 2.2e-06 0.0011 19.3 2.6 1 23 205 227 205 227 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF83-204 - 516 1.9e-82 267.4 121.8 6 15 1.5e-08 7.1e-06 26.2 0.3 1 23 233 255 233 255 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF83-204 - 516 1.9e-82 267.4 121.8 7 15 7e-07 0.00034 20.9 4.6 1 23 261 283 261 283 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF83-204 - 516 1.9e-82 267.4 121.8 8 15 3.7e-09 1.8e-06 28.1 1.5 1 23 289 311 289 311 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF83-204 - 516 1.9e-82 267.4 121.8 9 15 3.7e-09 1.8e-06 28.1 1.5 1 23 317 339 317 339 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF83-204 - 516 1.9e-82 267.4 121.8 10 15 8.5e-09 4.1e-06 26.9 0.3 1 23 345 367 345 367 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF83-204 - 516 1.9e-82 267.4 121.8 11 15 2.7e-08 1.3e-05 25.3 3.3 1 23 373 395 373 395 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF83-204 - 516 1.9e-82 267.4 121.8 12 15 2.6e-08 1.3e-05 25.4 0.4 1 23 401 423 401 423 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF83-204 - 516 1.9e-82 267.4 121.8 13 15 8.6e-07 0.00042 20.6 1.0 1 23 429 451 429 451 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF83-204 - 516 1.9e-82 267.4 121.8 14 15 2.7e-07 0.00013 22.2 1.5 1 23 457 479 457 479 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF83-204 - 516 1.9e-82 267.4 121.8 15 15 1.2e-07 5.6e-05 23.4 1.9 1 23 485 507 485 507 0.98 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZNF83-204 - 516 5.2e-48 157.5 107.1 1 14 1.1e-05 0.0052 17.5 0.4 1 23 121 143 121 144 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF83-204 - 516 5.2e-48 157.5 107.1 2 14 3.2e-05 0.016 16.0 2.6 1 23 149 171 149 172 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF83-204 - 516 5.2e-48 157.5 107.1 3 14 2.5e-05 0.012 16.4 0.8 1 23 177 199 177 200 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF83-204 - 516 5.2e-48 157.5 107.1 4 14 0.0002 0.097 13.6 2.0 1 23 205 227 205 228 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF83-204 - 516 5.2e-48 157.5 107.1 5 14 1.9e-05 0.0091 16.8 0.3 1 23 233 255 233 256 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF83-204 - 516 5.2e-48 157.5 107.1 6 14 0.00064 0.31 12.0 3.6 1 23 261 283 261 284 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF83-204 - 516 5.2e-48 157.5 107.1 7 14 2.7e-06 0.0013 19.4 1.7 1 23 289 311 289 312 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF83-204 - 516 5.2e-48 157.5 107.1 8 14 2.7e-06 0.0013 19.4 1.7 1 23 317 339 317 340 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF83-204 - 516 5.2e-48 157.5 107.1 9 14 9e-06 0.0043 17.8 0.2 1 23 345 367 345 368 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF83-204 - 516 5.2e-48 157.5 107.1 10 14 0.00017 0.084 13.8 2.4 1 23 373 395 373 396 0.90 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF83-204 - 516 5.2e-48 157.5 107.1 11 14 5e-06 0.0024 18.5 0.5 1 23 401 423 401 424 0.89 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF83-204 - 516 5.2e-48 157.5 107.1 12 14 6.8e-05 0.033 15.0 0.8 1 23 429 451 429 452 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF83-204 - 516 5.2e-48 157.5 107.1 13 14 0.00014 0.068 14.0 1.1 1 23 457 479 457 480 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF83-204 - 516 5.2e-48 157.5 107.1 14 14 5e-05 0.024 15.4 1.0 1 23 485 507 485 508 0.96 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF83-204 - 516 3.2e-21 74.8 123.3 1 15 3.4 1.7e+03 -0.8 0.1 1 12 92 103 92 105 0.78 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF83-204 - 516 3.2e-21 74.8 123.3 2 15 0.0012 0.6 10.2 0.3 2 22 121 141 120 145 0.84 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF83-204 - 516 3.2e-21 74.8 123.3 3 15 0.0096 4.7 7.3 5.5 2 13 149 160 149 170 0.74 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF83-204 - 516 3.2e-21 74.8 123.3 4 15 0.0016 0.77 9.8 2.9 2 14 177 189 177 199 0.79 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF83-204 - 516 3.2e-21 74.8 123.3 5 15 0.0025 1.2 9.2 4.5 2 21 205 224 205 227 0.76 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF83-204 - 516 3.2e-21 74.8 123.3 6 15 0.0013 0.64 10.1 0.4 2 12 233 243 233 252 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF83-204 - 516 3.2e-21 74.8 123.3 7 15 0.005 2.4 8.2 4.2 2 13 261 272 261 283 0.81 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF83-204 - 516 3.2e-21 74.8 123.3 8 15 0.0008 0.39 10.8 1.0 2 12 289 299 289 307 0.92 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF83-204 - 516 3.2e-21 74.8 123.3 9 15 0.0008 0.39 10.8 1.0 2 12 317 327 317 335 0.92 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF83-204 - 516 3.2e-21 74.8 123.3 10 15 0.00035 0.17 11.9 0.3 2 12 345 355 345 364 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF83-204 - 516 3.2e-21 74.8 123.3 11 15 0.032 15 5.7 4.6 2 12 373 383 373 394 0.92 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF83-204 - 516 3.2e-21 74.8 123.3 12 15 0.00033 0.16 12.0 0.8 2 12 401 411 401 412 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF83-204 - 516 3.2e-21 74.8 123.3 13 15 0.00015 0.074 13.1 0.8 1 22 428 449 428 453 0.79 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF83-204 - 516 3.2e-21 74.8 123.3 14 15 0.00036 0.18 11.9 1.0 2 21 457 476 457 481 0.87 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF83-204 - 516 3.2e-21 74.8 123.3 15 15 0.0018 0.89 9.6 1.2 1 12 484 495 484 495 0.92 C2H2-type zinc finger Zn-ribbon_8 PF09723.10 40 ZNF83-204 - 516 1.2e-19 70.1 76.7 1 15 0.073 35 4.6 0.8 5 15 120 130 92 133 0.52 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF83-204 - 516 1.2e-19 70.1 76.7 2 15 0.00033 0.16 12.1 2.4 5 34 120 156 119 156 0.92 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF83-204 - 516 1.2e-19 70.1 76.7 3 15 0.0012 0.56 10.4 0.3 6 20 149 163 148 171 0.84 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF83-204 - 516 1.2e-19 70.1 76.7 4 15 1.7e-05 0.0082 16.2 3.7 6 34 177 212 176 212 0.92 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF83-204 - 516 1.2e-19 70.1 76.7 5 15 0.00014 0.069 13.3 4.8 6 34 205 240 204 244 0.81 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF83-204 - 516 1.2e-19 70.1 76.7 6 15 0.0053 2.6 8.3 0.4 6 16 233 243 232 254 0.88 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF83-204 - 516 1.2e-19 70.1 76.7 7 15 3.9e-05 0.019 15.1 3.2 6 34 261 296 260 301 0.90 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF83-204 - 516 1.2e-19 70.1 76.7 8 15 0.003 1.5 9.0 0.4 6 17 289 300 288 307 0.86 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF83-204 - 516 1.2e-19 70.1 76.7 9 15 0.00023 0.11 12.6 4.6 6 34 317 352 316 356 0.84 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF83-204 - 516 1.2e-19 70.1 76.7 10 15 0.0059 2.9 8.1 5.3 6 33 345 379 344 380 0.77 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF83-204 - 516 1.2e-19 70.1 76.7 11 15 0.0034 1.6 8.9 5.9 6 34 373 408 371 412 0.89 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF83-204 - 516 1.2e-19 70.1 76.7 12 15 0.006 2.9 8.1 0.6 6 16 401 411 399 417 0.91 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF83-204 - 516 1.2e-19 70.1 76.7 13 15 0.00017 0.085 13.0 3.2 6 34 429 464 428 468 0.87 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF83-204 - 516 1.2e-19 70.1 76.7 14 15 0.012 6 7.1 0.3 6 19 457 470 455 479 0.81 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF83-204 - 516 1.2e-19 70.1 76.7 15 15 0.031 15 5.8 0.5 6 17 485 502 483 516 0.69 Zinc ribbon domain XPA_N PF01286.18 32 ZNF83-204 - 516 3.6e-15 55.7 46.1 1 14 0.23 1.1e+02 2.9 0.3 3 12 122 131 120 136 0.88 XPA protein N-terminal XPA_N PF01286.18 32 ZNF83-204 - 516 3.6e-15 55.7 46.1 2 14 0.044 21 5.2 0.1 3 12 150 159 148 166 0.89 XPA protein N-terminal XPA_N PF01286.18 32 ZNF83-204 - 516 3.6e-15 55.7 46.1 3 14 0.078 38 4.5 0.1 3 12 178 187 176 194 0.88 XPA protein N-terminal XPA_N PF01286.18 32 ZNF83-204 - 516 3.6e-15 55.7 46.1 4 14 0.044 21 5.3 0.1 3 12 206 215 204 222 0.89 XPA protein N-terminal XPA_N PF01286.18 32 ZNF83-204 - 516 3.6e-15 55.7 46.1 5 14 0.028 14 5.9 0.1 3 19 234 251 232 252 0.83 XPA protein N-terminal XPA_N PF01286.18 32 ZNF83-204 - 516 3.6e-15 55.7 46.1 6 14 2 9.5e+02 -0.0 0.1 3 11 262 270 259 273 0.65 XPA protein N-terminal XPA_N PF01286.18 32 ZNF83-204 - 516 3.6e-15 55.7 46.1 7 14 0.048 23 5.1 0.0 3 12 290 299 288 310 0.76 XPA protein N-terminal XPA_N PF01286.18 32 ZNF83-204 - 516 3.6e-15 55.7 46.1 8 14 0.048 23 5.1 0.0 3 12 318 327 316 338 0.76 XPA protein N-terminal XPA_N PF01286.18 32 ZNF83-204 - 516 3.6e-15 55.7 46.1 9 14 0.012 5.8 7.1 0.1 3 18 346 362 344 363 0.81 XPA protein N-terminal XPA_N PF01286.18 32 ZNF83-204 - 516 3.6e-15 55.7 46.1 10 14 0.0041 2 8.5 0.1 3 13 374 384 372 393 0.78 XPA protein N-terminal XPA_N PF01286.18 32 ZNF83-204 - 516 3.6e-15 55.7 46.1 11 14 0.0025 1.2 9.2 0.1 3 17 402 417 400 422 0.79 XPA protein N-terminal XPA_N PF01286.18 32 ZNF83-204 - 516 3.6e-15 55.7 46.1 12 14 0.082 40 4.4 0.1 3 11 430 438 428 444 0.87 XPA protein N-terminal XPA_N PF01286.18 32 ZNF83-204 - 516 3.6e-15 55.7 46.1 13 14 0.021 10 6.3 0.1 3 12 458 467 456 476 0.84 XPA protein N-terminal XPA_N PF01286.18 32 ZNF83-204 - 516 3.6e-15 55.7 46.1 14 14 0.003 1.5 9.0 0.1 3 18 486 502 485 505 0.85 XPA protein N-terminal zf-C2H2_jaz PF12171.8 27 ZNF83-204 - 516 7.3e-15 54.8 77.8 1 14 7e-05 0.034 14.5 0.8 1 22 120 141 120 141 0.95 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF83-204 - 516 7.3e-15 54.8 77.8 2 14 0.001 0.49 10.8 0.6 2 21 149 168 148 169 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF83-204 - 516 7.3e-15 54.8 77.8 3 14 0.047 23 5.4 0.6 2 22 177 197 176 197 0.90 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF83-204 - 516 7.3e-15 54.8 77.8 4 14 0.18 89 3.5 0.6 2 20 205 223 204 225 0.86 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF83-204 - 516 7.3e-15 54.8 77.8 5 14 0.085 41 4.6 0.1 2 21 233 252 232 253 0.91 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF83-204 - 516 7.3e-15 54.8 77.8 6 14 0.016 7.7 6.9 0.7 2 22 261 281 260 281 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF83-204 - 516 7.3e-15 54.8 77.8 7 14 0.00042 0.2 12.0 0.3 2 22 289 309 288 309 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF83-204 - 516 7.3e-15 54.8 77.8 8 14 0.00042 0.2 12.0 0.3 2 22 317 337 316 337 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF83-204 - 516 7.3e-15 54.8 77.8 9 14 0.0074 3.6 8.0 0.1 2 21 345 364 344 365 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF83-204 - 516 7.3e-15 54.8 77.8 10 14 0.0062 3 8.2 1.2 2 20 373 391 372 391 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF83-204 - 516 7.3e-15 54.8 77.8 11 14 0.11 51 4.3 0.4 2 18 401 417 400 421 0.76 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF83-204 - 516 7.3e-15 54.8 77.8 12 14 1.5 7.3e+02 0.6 0.1 2 11 429 438 428 447 0.91 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF83-204 - 516 7.3e-15 54.8 77.8 13 14 0.0058 2.8 8.3 0.1 2 20 457 475 456 475 0.96 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF83-204 - 516 7.3e-15 54.8 77.8 14 14 0.024 11 6.4 0.8 2 22 485 505 484 505 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_11 PF16622.5 29 ZNF83-204 - 516 2.5e-13 49.5 58.7 1 14 2.7 1.3e+03 -0.8 0.2 5 26 121 142 118 143 0.72 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF83-204 - 516 2.5e-13 49.5 58.7 2 14 0.028 13 5.6 0.3 5 26 149 170 146 171 0.92 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF83-204 - 516 2.5e-13 49.5 58.7 3 14 0.064 31 4.4 0.2 5 26 177 198 174 199 0.86 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF83-204 - 516 2.5e-13 49.5 58.7 4 14 0.054 26 4.7 0.3 5 26 205 226 202 227 0.88 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF83-204 - 516 2.5e-13 49.5 58.7 5 14 0.028 13 5.6 0.1 6 26 234 254 231 255 0.92 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF83-204 - 516 2.5e-13 49.5 58.7 6 14 1.2 5.6e+02 0.4 1.0 5 26 261 282 258 283 0.82 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF83-204 - 516 2.5e-13 49.5 58.7 7 14 0.00067 0.33 10.8 0.1 5 26 289 310 286 311 0.93 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF83-204 - 516 2.5e-13 49.5 58.7 8 14 0.00067 0.33 10.8 0.1 5 26 317 338 314 339 0.93 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF83-204 - 516 2.5e-13 49.5 58.7 9 14 0.0018 0.89 9.4 0.1 5 26 345 366 342 367 0.93 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF83-204 - 516 2.5e-13 49.5 58.7 10 14 0.3 1.5e+02 2.3 0.1 5 26 373 394 370 395 0.89 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF83-204 - 516 2.5e-13 49.5 58.7 11 14 0.039 19 5.1 0.0 5 26 401 422 398 423 0.86 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF83-204 - 516 2.5e-13 49.5 58.7 12 14 0.00044 0.21 11.4 0.1 4 26 428 450 426 451 0.93 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF83-204 - 516 2.5e-13 49.5 58.7 13 14 0.0007 0.34 10.7 0.2 5 26 457 478 454 479 0.91 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF83-204 - 516 2.5e-13 49.5 58.7 14 14 0.19 92 2.9 0.3 5 23 485 503 482 506 0.81 zinc-finger C2H2-type C1_1 PF00130.22 53 ZNF83-204 - 516 6e-13 48.5 72.8 1 12 4.9 2.4e+03 -1.5 0.2 14 39 73 103 63 105 0.60 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF83-204 - 516 6e-13 48.5 72.8 2 12 7.1e-05 0.034 14.0 4.0 1 40 111 160 111 167 0.91 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF83-204 - 516 6e-13 48.5 72.8 3 12 0.0001 0.048 13.5 2.5 7 40 172 216 163 219 0.85 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF83-204 - 516 6e-13 48.5 72.8 4 12 0.0003 0.15 12.0 2.1 6 40 228 272 219 276 0.86 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF83-204 - 516 6e-13 48.5 72.8 5 12 0.04 19 5.2 0.6 5 24 283 301 275 305 0.76 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF83-204 - 516 6e-13 48.5 72.8 6 12 0.0023 1.1 9.2 0.3 2 24 307 329 307 333 0.88 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF83-204 - 516 6e-13 48.5 72.8 7 12 0.00061 0.3 11.0 1.7 2 36 335 380 335 382 0.87 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF83-204 - 516 6e-13 48.5 72.8 8 12 0.0042 2 8.3 2.0 3 37 365 409 363 410 0.80 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF83-204 - 516 6e-13 48.5 72.8 9 12 0.00011 0.052 13.4 1.6 1 37 391 437 387 439 0.84 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF83-204 - 516 6e-13 48.5 72.8 10 12 0.0014 0.69 9.8 2.8 2 36 419 464 418 469 0.86 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF83-204 - 516 6e-13 48.5 72.8 11 12 0.0041 2 8.4 4.5 1 37 446 493 446 497 0.88 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF83-204 - 516 6e-13 48.5 72.8 12 12 0.098 47 4.0 1.3 4 22 478 502 475 516 0.62 Phorbol esters/diacylglycerol binding domain (C1 domain) zf_UBZ PF18439.1 32 ZNF83-204 - 516 1.5e-12 46.9 58.0 1 14 0.0098 4.7 6.9 0.1 2 21 120 140 119 140 0.87 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF83-204 - 516 1.5e-12 46.9 58.0 2 14 0.047 23 4.7 0.2 3 13 149 159 147 167 0.84 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF83-204 - 516 1.5e-12 46.9 58.0 3 14 0.021 10 5.8 0.3 3 20 177 195 175 196 0.77 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF83-204 - 516 1.5e-12 46.9 58.0 4 14 0.028 14 5.4 0.3 3 14 205 216 203 224 0.78 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF83-204 - 516 1.5e-12 46.9 58.0 5 14 0.025 12 5.6 0.1 3 15 233 245 231 252 0.83 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF83-204 - 516 1.5e-12 46.9 58.0 6 14 0.62 3e+02 1.1 0.4 3 20 261 279 259 280 0.77 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF83-204 - 516 1.5e-12 46.9 58.0 7 14 0.016 7.6 6.2 0.1 3 14 289 300 287 307 0.85 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF83-204 - 516 1.5e-12 46.9 58.0 8 14 0.016 7.6 6.2 0.1 3 14 317 328 315 335 0.85 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF83-204 - 516 1.5e-12 46.9 58.0 9 14 0.0094 4.6 6.9 0.1 3 16 345 359 343 364 0.78 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF83-204 - 516 1.5e-12 46.9 58.0 10 14 0.0066 3.2 7.4 0.6 3 15 373 385 371 392 0.80 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF83-204 - 516 1.5e-12 46.9 58.0 11 14 0.0018 0.88 9.2 0.1 3 15 401 413 399 417 0.86 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF83-204 - 516 1.5e-12 46.9 58.0 12 14 0.027 13 5.5 0.1 3 16 429 442 427 447 0.75 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF83-204 - 516 1.5e-12 46.9 58.0 13 14 0.019 9.1 6.0 0.1 3 18 457 473 455 476 0.79 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF83-204 - 516 1.5e-12 46.9 58.0 14 14 0.047 23 4.7 0.1 2 14 484 496 483 507 0.83 Ubiquitin-Binding Zinc Finger zinc_ribbon_15 PF17032.5 86 ZNF83-204 - 516 7.3e-12 45.9 57.9 1 9 0.0011 0.55 11.0 3.6 31 77 114 160 90 167 0.81 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF83-204 - 516 7.3e-12 45.9 57.9 2 9 0.001 0.5 11.1 2.0 32 76 171 215 166 220 0.86 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF83-204 - 516 7.3e-12 45.9 57.9 3 9 0.0014 0.67 10.8 2.0 31 78 198 245 191 248 0.85 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF83-204 - 516 7.3e-12 45.9 57.9 4 9 0.014 6.6 7.6 1.1 33 76 228 271 215 275 0.87 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF83-204 - 516 7.3e-12 45.9 57.9 5 9 0.013 6.2 7.6 4.7 30 78 253 301 235 304 0.78 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF83-204 - 516 7.3e-12 45.9 57.9 6 9 4.5e-05 0.022 15.5 1.1 26 78 305 357 303 362 0.91 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF83-204 - 516 7.3e-12 45.9 57.9 7 9 0.0012 0.6 10.9 2.1 35 78 370 413 362 418 0.86 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF83-204 - 516 7.3e-12 45.9 57.9 8 9 0.00011 0.055 14.2 0.8 29 76 420 467 415 475 0.89 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF83-204 - 516 7.3e-12 45.9 57.9 9 9 0.13 64 4.4 0.3 32 68 479 515 472 516 0.78 zinc-ribbon family HypA PF01155.19 112 ZNF83-204 - 516 3.6e-08 33.4 46.8 1 10 0.0014 0.68 10.0 1.5 64 95 114 157 90 163 0.79 Hydrogenase/urease nickel incorporation, metallochaperone, hypA HypA PF01155.19 112 ZNF83-204 - 516 3.6e-08 33.4 46.8 2 10 0.074 36 4.4 7.1 87 99 195 217 156 275 0.58 Hydrogenase/urease nickel incorporation, metallochaperone, hypA HypA PF01155.19 112 ZNF83-204 - 516 3.6e-08 33.4 46.8 3 10 0.0016 0.77 9.8 1.4 50 94 241 296 236 306 0.78 Hydrogenase/urease nickel incorporation, metallochaperone, hypA HypA PF01155.19 112 ZNF83-204 - 516 3.6e-08 33.4 46.8 4 10 0.0095 4.6 7.3 3.7 63 93 309 351 274 358 0.54 Hydrogenase/urease nickel incorporation, metallochaperone, hypA HypA PF01155.19 112 ZNF83-204 - 516 3.6e-08 33.4 46.8 5 10 0.0044 2.1 8.4 0.5 64 95 338 381 324 389 0.77 Hydrogenase/urease nickel incorporation, metallochaperone, hypA HypA PF01155.19 112 ZNF83-204 - 516 3.6e-08 33.4 46.8 6 10 0.0067 3.3 7.8 3.7 46 94 349 408 343 413 0.80 Hydrogenase/urease nickel incorporation, metallochaperone, hypA HypA PF01155.19 112 ZNF83-204 - 516 3.6e-08 33.4 46.8 7 10 0.005 2.4 8.2 0.6 64 94 394 436 381 441 0.79 Hydrogenase/urease nickel incorporation, metallochaperone, hypA HypA PF01155.19 112 ZNF83-204 - 516 3.6e-08 33.4 46.8 8 10 0.002 0.99 9.5 0.6 63 95 421 465 408 472 0.77 Hydrogenase/urease nickel incorporation, metallochaperone, hypA HypA PF01155.19 112 ZNF83-204 - 516 3.6e-08 33.4 46.8 9 10 0.0021 1 9.4 1.1 64 94 450 492 441 496 0.80 Hydrogenase/urease nickel incorporation, metallochaperone, hypA HypA PF01155.19 112 ZNF83-204 - 516 3.6e-08 33.4 46.8 10 10 0.22 1e+02 2.9 0.1 64 83 478 497 470 515 0.77 Hydrogenase/urease nickel incorporation, metallochaperone, hypA Zf_RING PF16744.5 73 ZNF83-204 - 516 4.2e-07 30.0 55.2 1 14 0.02 9.6 6.4 0.2 14 32 115 133 108 144 0.86 KIAA1045 RING finger Zf_RING PF16744.5 73 ZNF83-204 - 516 4.2e-07 30.0 55.2 2 14 0.0054 2.6 8.2 0.2 13 32 142 161 134 169 0.88 KIAA1045 RING finger Zf_RING PF16744.5 73 ZNF83-204 - 516 4.2e-07 30.0 55.2 3 14 0.19 90 3.3 0.1 13 31 170 188 163 196 0.87 KIAA1045 RING finger Zf_RING PF16744.5 73 ZNF83-204 - 516 4.2e-07 30.0 55.2 4 14 0.0054 2.6 8.2 0.3 13 32 198 217 187 227 0.86 KIAA1045 RING finger Zf_RING PF16744.5 73 ZNF83-204 - 516 4.2e-07 30.0 55.2 5 14 0.19 93 3.2 0.1 13 32 226 245 220 252 0.87 KIAA1045 RING finger Zf_RING PF16744.5 73 ZNF83-204 - 516 4.2e-07 30.0 55.2 6 14 0.00045 0.22 11.7 0.5 14 32 255 273 249 282 0.87 KIAA1045 RING finger Zf_RING PF16744.5 73 ZNF83-204 - 516 4.2e-07 30.0 55.2 7 14 0.11 55 4.0 0.1 13 32 282 302 276 309 0.84 KIAA1045 RING finger Zf_RING PF16744.5 73 ZNF83-204 - 516 4.2e-07 30.0 55.2 8 14 0.11 54 4.0 0.2 13 32 310 330 306 339 0.83 KIAA1045 RING finger Zf_RING PF16744.5 73 ZNF83-204 - 516 4.2e-07 30.0 55.2 9 14 0.28 1.4e+02 2.7 1.0 13 32 338 357 331 381 0.85 KIAA1045 RING finger Zf_RING PF16744.5 73 ZNF83-204 - 516 4.2e-07 30.0 55.2 10 14 2.2 1e+03 -0.1 0.1 15 31 368 384 364 390 0.78 KIAA1045 RING finger Zf_RING PF16744.5 73 ZNF83-204 - 516 4.2e-07 30.0 55.2 11 14 0.17 83 3.4 0.1 13 32 394 413 383 420 0.84 KIAA1045 RING finger Zf_RING PF16744.5 73 ZNF83-204 - 516 4.2e-07 30.0 55.2 12 14 0.13 62 3.8 0.1 13 30 422 439 420 455 0.79 KIAA1045 RING finger Zf_RING PF16744.5 73 ZNF83-204 - 516 4.2e-07 30.0 55.2 13 14 2.1 1e+03 -0.1 0.0 12 29 449 466 440 476 0.83 KIAA1045 RING finger Zf_RING PF16744.5 73 ZNF83-204 - 516 4.2e-07 30.0 55.2 14 14 0.32 1.5e+02 2.5 0.2 13 33 478 498 468 514 0.82 KIAA1045 RING finger # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF83-204.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF83-204.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF83-204.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF83-204.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF83-204.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:15:06 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZNF83-205 - 516 1.8e-105 341.0 119.1 1 16 1.3 6.1e+02 1.1 0.0 14 24 92 102 81 104 0.81 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF83-205 - 516 1.8e-105 341.0 119.1 2 16 3.1e-06 0.0015 18.9 1.2 3 25 109 131 107 132 0.89 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF83-205 - 516 1.8e-105 341.0 119.1 3 16 6.9e-11 3.3e-08 33.6 1.1 1 25 135 159 135 160 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF83-205 - 516 1.8e-105 341.0 119.1 4 16 7.9e-11 3.8e-08 33.4 1.2 1 25 163 187 163 188 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF83-205 - 516 1.8e-105 341.0 119.1 5 16 3.1e-10 1.5e-07 31.5 2.3 1 24 191 214 191 216 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF83-205 - 516 1.8e-105 341.0 119.1 6 16 7.8e-10 3.8e-07 30.3 1.4 1 25 219 243 219 244 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF83-205 - 516 1.8e-105 341.0 119.1 7 16 7.8e-10 3.8e-07 30.2 1.2 2 26 248 272 247 272 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF83-205 - 516 1.8e-105 341.0 119.1 8 16 8.1e-11 3.9e-08 33.4 2.4 1 26 275 300 275 300 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF83-205 - 516 1.8e-105 341.0 119.1 9 16 5.3e-10 2.6e-07 30.8 0.7 1 26 303 328 303 328 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF83-205 - 516 1.8e-105 341.0 119.1 10 16 6.8e-10 3.3e-07 30.4 0.3 1 25 331 355 331 356 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF83-205 - 516 1.8e-105 341.0 119.1 11 16 1.1e-09 5.2e-07 29.8 0.1 2 25 360 383 359 384 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF83-205 - 516 1.8e-105 341.0 119.1 12 16 7.9e-11 3.8e-08 33.4 1.9 1 25 387 411 387 412 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF83-205 - 516 1.8e-105 341.0 119.1 13 16 2.7e-08 1.3e-05 25.4 0.2 2 24 416 438 415 439 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF83-205 - 516 1.8e-105 341.0 119.1 14 16 1.4e-09 6.8e-07 29.4 1.9 2 25 444 467 443 467 0.89 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF83-205 - 516 1.8e-105 341.0 119.1 15 16 2e-06 0.00096 19.5 2.8 1 24 471 494 471 495 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF83-205 - 516 1.8e-105 341.0 119.1 16 16 0.02 9.8 6.8 0.2 2 14 500 512 499 516 0.84 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZNF83-205 - 516 1.9e-82 267.4 121.8 1 15 7.2 3.5e+03 -1.2 0.8 7 23 99 115 93 115 0.73 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF83-205 - 516 1.9e-82 267.4 121.8 2 15 3.4e-09 1.7e-06 28.2 0.5 1 23 121 143 121 143 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF83-205 - 516 1.9e-82 267.4 121.8 3 15 3.4e-07 0.00017 21.9 3.7 1 23 149 171 149 171 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF83-205 - 516 1.9e-82 267.4 121.8 4 15 6.2e-09 3e-06 27.4 0.9 1 23 177 199 177 199 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF83-205 - 516 1.9e-82 267.4 121.8 5 15 2.2e-06 0.0011 19.3 2.6 1 23 205 227 205 227 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF83-205 - 516 1.9e-82 267.4 121.8 6 15 1.5e-08 7.1e-06 26.2 0.3 1 23 233 255 233 255 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF83-205 - 516 1.9e-82 267.4 121.8 7 15 7e-07 0.00034 20.9 4.6 1 23 261 283 261 283 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF83-205 - 516 1.9e-82 267.4 121.8 8 15 3.7e-09 1.8e-06 28.1 1.5 1 23 289 311 289 311 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF83-205 - 516 1.9e-82 267.4 121.8 9 15 3.7e-09 1.8e-06 28.1 1.5 1 23 317 339 317 339 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF83-205 - 516 1.9e-82 267.4 121.8 10 15 8.5e-09 4.1e-06 26.9 0.3 1 23 345 367 345 367 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF83-205 - 516 1.9e-82 267.4 121.8 11 15 2.7e-08 1.3e-05 25.3 3.3 1 23 373 395 373 395 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF83-205 - 516 1.9e-82 267.4 121.8 12 15 2.6e-08 1.3e-05 25.4 0.4 1 23 401 423 401 423 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF83-205 - 516 1.9e-82 267.4 121.8 13 15 8.6e-07 0.00042 20.6 1.0 1 23 429 451 429 451 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF83-205 - 516 1.9e-82 267.4 121.8 14 15 2.7e-07 0.00013 22.2 1.5 1 23 457 479 457 479 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF83-205 - 516 1.9e-82 267.4 121.8 15 15 1.2e-07 5.6e-05 23.4 1.9 1 23 485 507 485 507 0.98 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZNF83-205 - 516 5.2e-48 157.5 107.1 1 14 1.1e-05 0.0052 17.5 0.4 1 23 121 143 121 144 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF83-205 - 516 5.2e-48 157.5 107.1 2 14 3.2e-05 0.016 16.0 2.6 1 23 149 171 149 172 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF83-205 - 516 5.2e-48 157.5 107.1 3 14 2.5e-05 0.012 16.4 0.8 1 23 177 199 177 200 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF83-205 - 516 5.2e-48 157.5 107.1 4 14 0.0002 0.097 13.6 2.0 1 23 205 227 205 228 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF83-205 - 516 5.2e-48 157.5 107.1 5 14 1.9e-05 0.0091 16.8 0.3 1 23 233 255 233 256 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF83-205 - 516 5.2e-48 157.5 107.1 6 14 0.00064 0.31 12.0 3.6 1 23 261 283 261 284 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF83-205 - 516 5.2e-48 157.5 107.1 7 14 2.7e-06 0.0013 19.4 1.7 1 23 289 311 289 312 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF83-205 - 516 5.2e-48 157.5 107.1 8 14 2.7e-06 0.0013 19.4 1.7 1 23 317 339 317 340 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF83-205 - 516 5.2e-48 157.5 107.1 9 14 9e-06 0.0043 17.8 0.2 1 23 345 367 345 368 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF83-205 - 516 5.2e-48 157.5 107.1 10 14 0.00017 0.084 13.8 2.4 1 23 373 395 373 396 0.90 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF83-205 - 516 5.2e-48 157.5 107.1 11 14 5e-06 0.0024 18.5 0.5 1 23 401 423 401 424 0.89 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF83-205 - 516 5.2e-48 157.5 107.1 12 14 6.8e-05 0.033 15.0 0.8 1 23 429 451 429 452 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF83-205 - 516 5.2e-48 157.5 107.1 13 14 0.00014 0.068 14.0 1.1 1 23 457 479 457 480 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF83-205 - 516 5.2e-48 157.5 107.1 14 14 5e-05 0.024 15.4 1.0 1 23 485 507 485 508 0.96 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF83-205 - 516 3.2e-21 74.8 123.3 1 15 3.4 1.7e+03 -0.8 0.1 1 12 92 103 92 105 0.78 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF83-205 - 516 3.2e-21 74.8 123.3 2 15 0.0012 0.6 10.2 0.3 2 22 121 141 120 145 0.84 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF83-205 - 516 3.2e-21 74.8 123.3 3 15 0.0096 4.7 7.3 5.5 2 13 149 160 149 170 0.74 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF83-205 - 516 3.2e-21 74.8 123.3 4 15 0.0016 0.77 9.8 2.9 2 14 177 189 177 199 0.79 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF83-205 - 516 3.2e-21 74.8 123.3 5 15 0.0025 1.2 9.2 4.5 2 21 205 224 205 227 0.76 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF83-205 - 516 3.2e-21 74.8 123.3 6 15 0.0013 0.64 10.1 0.4 2 12 233 243 233 252 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF83-205 - 516 3.2e-21 74.8 123.3 7 15 0.005 2.4 8.2 4.2 2 13 261 272 261 283 0.81 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF83-205 - 516 3.2e-21 74.8 123.3 8 15 0.0008 0.39 10.8 1.0 2 12 289 299 289 307 0.92 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF83-205 - 516 3.2e-21 74.8 123.3 9 15 0.0008 0.39 10.8 1.0 2 12 317 327 317 335 0.92 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF83-205 - 516 3.2e-21 74.8 123.3 10 15 0.00035 0.17 11.9 0.3 2 12 345 355 345 364 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF83-205 - 516 3.2e-21 74.8 123.3 11 15 0.032 15 5.7 4.6 2 12 373 383 373 394 0.92 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF83-205 - 516 3.2e-21 74.8 123.3 12 15 0.00033 0.16 12.0 0.8 2 12 401 411 401 412 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF83-205 - 516 3.2e-21 74.8 123.3 13 15 0.00015 0.074 13.1 0.8 1 22 428 449 428 453 0.79 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF83-205 - 516 3.2e-21 74.8 123.3 14 15 0.00036 0.18 11.9 1.0 2 21 457 476 457 481 0.87 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF83-205 - 516 3.2e-21 74.8 123.3 15 15 0.0018 0.89 9.6 1.2 1 12 484 495 484 495 0.92 C2H2-type zinc finger Zn-ribbon_8 PF09723.10 40 ZNF83-205 - 516 1.2e-19 70.1 76.7 1 15 0.073 35 4.6 0.8 5 15 120 130 92 133 0.52 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF83-205 - 516 1.2e-19 70.1 76.7 2 15 0.00033 0.16 12.1 2.4 5 34 120 156 119 156 0.92 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF83-205 - 516 1.2e-19 70.1 76.7 3 15 0.0012 0.56 10.4 0.3 6 20 149 163 148 171 0.84 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF83-205 - 516 1.2e-19 70.1 76.7 4 15 1.7e-05 0.0082 16.2 3.7 6 34 177 212 176 212 0.92 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF83-205 - 516 1.2e-19 70.1 76.7 5 15 0.00014 0.069 13.3 4.8 6 34 205 240 204 244 0.81 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF83-205 - 516 1.2e-19 70.1 76.7 6 15 0.0053 2.6 8.3 0.4 6 16 233 243 232 254 0.88 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF83-205 - 516 1.2e-19 70.1 76.7 7 15 3.9e-05 0.019 15.1 3.2 6 34 261 296 260 301 0.90 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF83-205 - 516 1.2e-19 70.1 76.7 8 15 0.003 1.5 9.0 0.4 6 17 289 300 288 307 0.86 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF83-205 - 516 1.2e-19 70.1 76.7 9 15 0.00023 0.11 12.6 4.6 6 34 317 352 316 356 0.84 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF83-205 - 516 1.2e-19 70.1 76.7 10 15 0.0059 2.9 8.1 5.3 6 33 345 379 344 380 0.77 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF83-205 - 516 1.2e-19 70.1 76.7 11 15 0.0034 1.6 8.9 5.9 6 34 373 408 371 412 0.89 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF83-205 - 516 1.2e-19 70.1 76.7 12 15 0.006 2.9 8.1 0.6 6 16 401 411 399 417 0.91 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF83-205 - 516 1.2e-19 70.1 76.7 13 15 0.00017 0.085 13.0 3.2 6 34 429 464 428 468 0.87 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF83-205 - 516 1.2e-19 70.1 76.7 14 15 0.012 6 7.1 0.3 6 19 457 470 455 479 0.81 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF83-205 - 516 1.2e-19 70.1 76.7 15 15 0.031 15 5.8 0.5 6 17 485 502 483 516 0.69 Zinc ribbon domain XPA_N PF01286.18 32 ZNF83-205 - 516 3.6e-15 55.7 46.1 1 14 0.23 1.1e+02 2.9 0.3 3 12 122 131 120 136 0.88 XPA protein N-terminal XPA_N PF01286.18 32 ZNF83-205 - 516 3.6e-15 55.7 46.1 2 14 0.044 21 5.2 0.1 3 12 150 159 148 166 0.89 XPA protein N-terminal XPA_N PF01286.18 32 ZNF83-205 - 516 3.6e-15 55.7 46.1 3 14 0.078 38 4.5 0.1 3 12 178 187 176 194 0.88 XPA protein N-terminal XPA_N PF01286.18 32 ZNF83-205 - 516 3.6e-15 55.7 46.1 4 14 0.044 21 5.3 0.1 3 12 206 215 204 222 0.89 XPA protein N-terminal XPA_N PF01286.18 32 ZNF83-205 - 516 3.6e-15 55.7 46.1 5 14 0.028 14 5.9 0.1 3 19 234 251 232 252 0.83 XPA protein N-terminal XPA_N PF01286.18 32 ZNF83-205 - 516 3.6e-15 55.7 46.1 6 14 2 9.5e+02 -0.0 0.1 3 11 262 270 259 273 0.65 XPA protein N-terminal XPA_N PF01286.18 32 ZNF83-205 - 516 3.6e-15 55.7 46.1 7 14 0.048 23 5.1 0.0 3 12 290 299 288 310 0.76 XPA protein N-terminal XPA_N PF01286.18 32 ZNF83-205 - 516 3.6e-15 55.7 46.1 8 14 0.048 23 5.1 0.0 3 12 318 327 316 338 0.76 XPA protein N-terminal XPA_N PF01286.18 32 ZNF83-205 - 516 3.6e-15 55.7 46.1 9 14 0.012 5.8 7.1 0.1 3 18 346 362 344 363 0.81 XPA protein N-terminal XPA_N PF01286.18 32 ZNF83-205 - 516 3.6e-15 55.7 46.1 10 14 0.0041 2 8.5 0.1 3 13 374 384 372 393 0.78 XPA protein N-terminal XPA_N PF01286.18 32 ZNF83-205 - 516 3.6e-15 55.7 46.1 11 14 0.0025 1.2 9.2 0.1 3 17 402 417 400 422 0.79 XPA protein N-terminal XPA_N PF01286.18 32 ZNF83-205 - 516 3.6e-15 55.7 46.1 12 14 0.082 40 4.4 0.1 3 11 430 438 428 444 0.87 XPA protein N-terminal XPA_N PF01286.18 32 ZNF83-205 - 516 3.6e-15 55.7 46.1 13 14 0.021 10 6.3 0.1 3 12 458 467 456 476 0.84 XPA protein N-terminal XPA_N PF01286.18 32 ZNF83-205 - 516 3.6e-15 55.7 46.1 14 14 0.003 1.5 9.0 0.1 3 18 486 502 485 505 0.85 XPA protein N-terminal zf-C2H2_jaz PF12171.8 27 ZNF83-205 - 516 7.3e-15 54.8 77.8 1 14 7e-05 0.034 14.5 0.8 1 22 120 141 120 141 0.95 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF83-205 - 516 7.3e-15 54.8 77.8 2 14 0.001 0.49 10.8 0.6 2 21 149 168 148 169 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF83-205 - 516 7.3e-15 54.8 77.8 3 14 0.047 23 5.4 0.6 2 22 177 197 176 197 0.90 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF83-205 - 516 7.3e-15 54.8 77.8 4 14 0.18 89 3.5 0.6 2 20 205 223 204 225 0.86 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF83-205 - 516 7.3e-15 54.8 77.8 5 14 0.085 41 4.6 0.1 2 21 233 252 232 253 0.91 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF83-205 - 516 7.3e-15 54.8 77.8 6 14 0.016 7.7 6.9 0.7 2 22 261 281 260 281 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF83-205 - 516 7.3e-15 54.8 77.8 7 14 0.00042 0.2 12.0 0.3 2 22 289 309 288 309 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF83-205 - 516 7.3e-15 54.8 77.8 8 14 0.00042 0.2 12.0 0.3 2 22 317 337 316 337 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF83-205 - 516 7.3e-15 54.8 77.8 9 14 0.0074 3.6 8.0 0.1 2 21 345 364 344 365 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF83-205 - 516 7.3e-15 54.8 77.8 10 14 0.0062 3 8.2 1.2 2 20 373 391 372 391 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF83-205 - 516 7.3e-15 54.8 77.8 11 14 0.11 51 4.3 0.4 2 18 401 417 400 421 0.76 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF83-205 - 516 7.3e-15 54.8 77.8 12 14 1.5 7.3e+02 0.6 0.1 2 11 429 438 428 447 0.91 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF83-205 - 516 7.3e-15 54.8 77.8 13 14 0.0058 2.8 8.3 0.1 2 20 457 475 456 475 0.96 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF83-205 - 516 7.3e-15 54.8 77.8 14 14 0.024 11 6.4 0.8 2 22 485 505 484 505 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_11 PF16622.5 29 ZNF83-205 - 516 2.5e-13 49.5 58.7 1 14 2.7 1.3e+03 -0.8 0.2 5 26 121 142 118 143 0.72 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF83-205 - 516 2.5e-13 49.5 58.7 2 14 0.028 13 5.6 0.3 5 26 149 170 146 171 0.92 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF83-205 - 516 2.5e-13 49.5 58.7 3 14 0.064 31 4.4 0.2 5 26 177 198 174 199 0.86 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF83-205 - 516 2.5e-13 49.5 58.7 4 14 0.054 26 4.7 0.3 5 26 205 226 202 227 0.88 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF83-205 - 516 2.5e-13 49.5 58.7 5 14 0.028 13 5.6 0.1 6 26 234 254 231 255 0.92 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF83-205 - 516 2.5e-13 49.5 58.7 6 14 1.2 5.6e+02 0.4 1.0 5 26 261 282 258 283 0.82 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF83-205 - 516 2.5e-13 49.5 58.7 7 14 0.00067 0.33 10.8 0.1 5 26 289 310 286 311 0.93 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF83-205 - 516 2.5e-13 49.5 58.7 8 14 0.00067 0.33 10.8 0.1 5 26 317 338 314 339 0.93 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF83-205 - 516 2.5e-13 49.5 58.7 9 14 0.0018 0.89 9.4 0.1 5 26 345 366 342 367 0.93 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF83-205 - 516 2.5e-13 49.5 58.7 10 14 0.3 1.5e+02 2.3 0.1 5 26 373 394 370 395 0.89 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF83-205 - 516 2.5e-13 49.5 58.7 11 14 0.039 19 5.1 0.0 5 26 401 422 398 423 0.86 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF83-205 - 516 2.5e-13 49.5 58.7 12 14 0.00044 0.21 11.4 0.1 4 26 428 450 426 451 0.93 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF83-205 - 516 2.5e-13 49.5 58.7 13 14 0.0007 0.34 10.7 0.2 5 26 457 478 454 479 0.91 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF83-205 - 516 2.5e-13 49.5 58.7 14 14 0.19 92 2.9 0.3 5 23 485 503 482 506 0.81 zinc-finger C2H2-type C1_1 PF00130.22 53 ZNF83-205 - 516 6e-13 48.5 72.8 1 12 4.9 2.4e+03 -1.5 0.2 14 39 73 103 63 105 0.60 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF83-205 - 516 6e-13 48.5 72.8 2 12 7.1e-05 0.034 14.0 4.0 1 40 111 160 111 167 0.91 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF83-205 - 516 6e-13 48.5 72.8 3 12 0.0001 0.048 13.5 2.5 7 40 172 216 163 219 0.85 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF83-205 - 516 6e-13 48.5 72.8 4 12 0.0003 0.15 12.0 2.1 6 40 228 272 219 276 0.86 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF83-205 - 516 6e-13 48.5 72.8 5 12 0.04 19 5.2 0.6 5 24 283 301 275 305 0.76 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF83-205 - 516 6e-13 48.5 72.8 6 12 0.0023 1.1 9.2 0.3 2 24 307 329 307 333 0.88 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF83-205 - 516 6e-13 48.5 72.8 7 12 0.00061 0.3 11.0 1.7 2 36 335 380 335 382 0.87 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF83-205 - 516 6e-13 48.5 72.8 8 12 0.0042 2 8.3 2.0 3 37 365 409 363 410 0.80 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF83-205 - 516 6e-13 48.5 72.8 9 12 0.00011 0.052 13.4 1.6 1 37 391 437 387 439 0.84 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF83-205 - 516 6e-13 48.5 72.8 10 12 0.0014 0.69 9.8 2.8 2 36 419 464 418 469 0.86 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF83-205 - 516 6e-13 48.5 72.8 11 12 0.0041 2 8.4 4.5 1 37 446 493 446 497 0.88 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF83-205 - 516 6e-13 48.5 72.8 12 12 0.098 47 4.0 1.3 4 22 478 502 475 516 0.62 Phorbol esters/diacylglycerol binding domain (C1 domain) zf_UBZ PF18439.1 32 ZNF83-205 - 516 1.5e-12 46.9 58.0 1 14 0.0098 4.7 6.9 0.1 2 21 120 140 119 140 0.87 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF83-205 - 516 1.5e-12 46.9 58.0 2 14 0.047 23 4.7 0.2 3 13 149 159 147 167 0.84 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF83-205 - 516 1.5e-12 46.9 58.0 3 14 0.021 10 5.8 0.3 3 20 177 195 175 196 0.77 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF83-205 - 516 1.5e-12 46.9 58.0 4 14 0.028 14 5.4 0.3 3 14 205 216 203 224 0.78 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF83-205 - 516 1.5e-12 46.9 58.0 5 14 0.025 12 5.6 0.1 3 15 233 245 231 252 0.83 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF83-205 - 516 1.5e-12 46.9 58.0 6 14 0.62 3e+02 1.1 0.4 3 20 261 279 259 280 0.77 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF83-205 - 516 1.5e-12 46.9 58.0 7 14 0.016 7.6 6.2 0.1 3 14 289 300 287 307 0.85 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF83-205 - 516 1.5e-12 46.9 58.0 8 14 0.016 7.6 6.2 0.1 3 14 317 328 315 335 0.85 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF83-205 - 516 1.5e-12 46.9 58.0 9 14 0.0094 4.6 6.9 0.1 3 16 345 359 343 364 0.78 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF83-205 - 516 1.5e-12 46.9 58.0 10 14 0.0066 3.2 7.4 0.6 3 15 373 385 371 392 0.80 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF83-205 - 516 1.5e-12 46.9 58.0 11 14 0.0018 0.88 9.2 0.1 3 15 401 413 399 417 0.86 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF83-205 - 516 1.5e-12 46.9 58.0 12 14 0.027 13 5.5 0.1 3 16 429 442 427 447 0.75 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF83-205 - 516 1.5e-12 46.9 58.0 13 14 0.019 9.1 6.0 0.1 3 18 457 473 455 476 0.79 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF83-205 - 516 1.5e-12 46.9 58.0 14 14 0.047 23 4.7 0.1 2 14 484 496 483 507 0.83 Ubiquitin-Binding Zinc Finger zinc_ribbon_15 PF17032.5 86 ZNF83-205 - 516 7.3e-12 45.9 57.9 1 9 0.0011 0.55 11.0 3.6 31 77 114 160 90 167 0.81 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF83-205 - 516 7.3e-12 45.9 57.9 2 9 0.001 0.5 11.1 2.0 32 76 171 215 166 220 0.86 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF83-205 - 516 7.3e-12 45.9 57.9 3 9 0.0014 0.67 10.8 2.0 31 78 198 245 191 248 0.85 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF83-205 - 516 7.3e-12 45.9 57.9 4 9 0.014 6.6 7.6 1.1 33 76 228 271 215 275 0.87 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF83-205 - 516 7.3e-12 45.9 57.9 5 9 0.013 6.2 7.6 4.7 30 78 253 301 235 304 0.78 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF83-205 - 516 7.3e-12 45.9 57.9 6 9 4.5e-05 0.022 15.5 1.1 26 78 305 357 303 362 0.91 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF83-205 - 516 7.3e-12 45.9 57.9 7 9 0.0012 0.6 10.9 2.1 35 78 370 413 362 418 0.86 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF83-205 - 516 7.3e-12 45.9 57.9 8 9 0.00011 0.055 14.2 0.8 29 76 420 467 415 475 0.89 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF83-205 - 516 7.3e-12 45.9 57.9 9 9 0.13 64 4.4 0.3 32 68 479 515 472 516 0.78 zinc-ribbon family HypA PF01155.19 112 ZNF83-205 - 516 3.6e-08 33.4 46.8 1 10 0.0014 0.68 10.0 1.5 64 95 114 157 90 163 0.79 Hydrogenase/urease nickel incorporation, metallochaperone, hypA HypA PF01155.19 112 ZNF83-205 - 516 3.6e-08 33.4 46.8 2 10 0.074 36 4.4 7.1 87 99 195 217 156 275 0.58 Hydrogenase/urease nickel incorporation, metallochaperone, hypA HypA PF01155.19 112 ZNF83-205 - 516 3.6e-08 33.4 46.8 3 10 0.0016 0.77 9.8 1.4 50 94 241 296 236 306 0.78 Hydrogenase/urease nickel incorporation, metallochaperone, hypA HypA PF01155.19 112 ZNF83-205 - 516 3.6e-08 33.4 46.8 4 10 0.0095 4.6 7.3 3.7 63 93 309 351 274 358 0.54 Hydrogenase/urease nickel incorporation, metallochaperone, hypA HypA PF01155.19 112 ZNF83-205 - 516 3.6e-08 33.4 46.8 5 10 0.0044 2.1 8.4 0.5 64 95 338 381 324 389 0.77 Hydrogenase/urease nickel incorporation, metallochaperone, hypA HypA PF01155.19 112 ZNF83-205 - 516 3.6e-08 33.4 46.8 6 10 0.0067 3.3 7.8 3.7 46 94 349 408 343 413 0.80 Hydrogenase/urease nickel incorporation, metallochaperone, hypA HypA PF01155.19 112 ZNF83-205 - 516 3.6e-08 33.4 46.8 7 10 0.005 2.4 8.2 0.6 64 94 394 436 381 441 0.79 Hydrogenase/urease nickel incorporation, metallochaperone, hypA HypA PF01155.19 112 ZNF83-205 - 516 3.6e-08 33.4 46.8 8 10 0.002 0.99 9.5 0.6 63 95 421 465 408 472 0.77 Hydrogenase/urease nickel incorporation, metallochaperone, hypA HypA PF01155.19 112 ZNF83-205 - 516 3.6e-08 33.4 46.8 9 10 0.0021 1 9.4 1.1 64 94 450 492 441 496 0.80 Hydrogenase/urease nickel incorporation, metallochaperone, hypA HypA PF01155.19 112 ZNF83-205 - 516 3.6e-08 33.4 46.8 10 10 0.22 1e+02 2.9 0.1 64 83 478 497 470 515 0.77 Hydrogenase/urease nickel incorporation, metallochaperone, hypA Zf_RING PF16744.5 73 ZNF83-205 - 516 4.2e-07 30.0 55.2 1 14 0.02 9.6 6.4 0.2 14 32 115 133 108 144 0.86 KIAA1045 RING finger Zf_RING PF16744.5 73 ZNF83-205 - 516 4.2e-07 30.0 55.2 2 14 0.0054 2.6 8.2 0.2 13 32 142 161 134 169 0.88 KIAA1045 RING finger Zf_RING PF16744.5 73 ZNF83-205 - 516 4.2e-07 30.0 55.2 3 14 0.19 90 3.3 0.1 13 31 170 188 163 196 0.87 KIAA1045 RING finger Zf_RING PF16744.5 73 ZNF83-205 - 516 4.2e-07 30.0 55.2 4 14 0.0054 2.6 8.2 0.3 13 32 198 217 187 227 0.86 KIAA1045 RING finger Zf_RING PF16744.5 73 ZNF83-205 - 516 4.2e-07 30.0 55.2 5 14 0.19 93 3.2 0.1 13 32 226 245 220 252 0.87 KIAA1045 RING finger Zf_RING PF16744.5 73 ZNF83-205 - 516 4.2e-07 30.0 55.2 6 14 0.00045 0.22 11.7 0.5 14 32 255 273 249 282 0.87 KIAA1045 RING finger Zf_RING PF16744.5 73 ZNF83-205 - 516 4.2e-07 30.0 55.2 7 14 0.11 55 4.0 0.1 13 32 282 302 276 309 0.84 KIAA1045 RING finger Zf_RING PF16744.5 73 ZNF83-205 - 516 4.2e-07 30.0 55.2 8 14 0.11 54 4.0 0.2 13 32 310 330 306 339 0.83 KIAA1045 RING finger Zf_RING PF16744.5 73 ZNF83-205 - 516 4.2e-07 30.0 55.2 9 14 0.28 1.4e+02 2.7 1.0 13 32 338 357 331 381 0.85 KIAA1045 RING finger Zf_RING PF16744.5 73 ZNF83-205 - 516 4.2e-07 30.0 55.2 10 14 2.2 1e+03 -0.1 0.1 15 31 368 384 364 390 0.78 KIAA1045 RING finger Zf_RING PF16744.5 73 ZNF83-205 - 516 4.2e-07 30.0 55.2 11 14 0.17 83 3.4 0.1 13 32 394 413 383 420 0.84 KIAA1045 RING finger Zf_RING PF16744.5 73 ZNF83-205 - 516 4.2e-07 30.0 55.2 12 14 0.13 62 3.8 0.1 13 30 422 439 420 455 0.79 KIAA1045 RING finger Zf_RING PF16744.5 73 ZNF83-205 - 516 4.2e-07 30.0 55.2 13 14 2.1 1e+03 -0.1 0.0 12 29 449 466 440 476 0.83 KIAA1045 RING finger Zf_RING PF16744.5 73 ZNF83-205 - 516 4.2e-07 30.0 55.2 14 14 0.32 1.5e+02 2.5 0.2 13 33 478 498 468 514 0.82 KIAA1045 RING finger # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF83-205.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF83-205.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF83-205.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF83-205.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF83-205.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:15:07 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- KRAB PF01352.27 42 ZNF83-206 - 95 2.3e-24 84.7 0.0 1 1 4.2e-28 3.8e-24 84.1 0.0 2 42 24 64 23 64 0.98 KRAB box # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF83-206.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF83-206.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF83-206.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF83-206.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF83-206.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:15:07 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- KRAB PF01352.27 42 ZNF83-207 - 53 1.5e-28 98.2 0.2 1 1 9.1e-33 1.6e-28 98.0 0.2 1 42 7 48 7 48 0.97 KRAB box # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF83-207.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF83-207.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF83-207.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF83-207.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF83-207.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:15:07 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- KRAB PF01352.27 42 ZNF83-208 - 95 2.3e-24 84.7 0.0 1 1 4.2e-28 3.8e-24 84.1 0.0 2 42 24 64 23 64 0.98 KRAB box # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF83-208.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF83-208.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF83-208.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF83-208.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF83-208.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:15:08 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- KRAB PF01352.27 42 ZNF83-209 - 125 1.8e-28 97.9 0.1 1 2 5.1e-32 4.6e-28 96.6 0.1 1 42 7 48 7 48 0.98 KRAB box KRAB PF01352.27 42 ZNF83-209 - 125 1.8e-28 97.9 0.1 2 2 0.38 3.4e+03 -2.2 0.0 28 36 115 123 114 124 0.84 KRAB box # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF83-209.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF83-209.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF83-209.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF83-209.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF83-209.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:15:08 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- KRAB PF01352.27 42 ZNF83-210 - 92 5.7e-28 96.3 0.2 1 1 4.4e-32 7.8e-28 95.9 0.2 1 42 7 48 7 48 0.97 KRAB box # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF83-210.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF83-210.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF83-210.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF83-210.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF83-210.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:15:09 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZNF83-211 - 516 1.8e-105 341.0 119.1 1 16 1.3 6.1e+02 1.1 0.0 14 24 92 102 81 104 0.81 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF83-211 - 516 1.8e-105 341.0 119.1 2 16 3.1e-06 0.0015 18.9 1.2 3 25 109 131 107 132 0.89 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF83-211 - 516 1.8e-105 341.0 119.1 3 16 6.9e-11 3.3e-08 33.6 1.1 1 25 135 159 135 160 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF83-211 - 516 1.8e-105 341.0 119.1 4 16 7.9e-11 3.8e-08 33.4 1.2 1 25 163 187 163 188 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF83-211 - 516 1.8e-105 341.0 119.1 5 16 3.1e-10 1.5e-07 31.5 2.3 1 24 191 214 191 216 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF83-211 - 516 1.8e-105 341.0 119.1 6 16 7.8e-10 3.8e-07 30.3 1.4 1 25 219 243 219 244 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF83-211 - 516 1.8e-105 341.0 119.1 7 16 7.8e-10 3.8e-07 30.2 1.2 2 26 248 272 247 272 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF83-211 - 516 1.8e-105 341.0 119.1 8 16 8.1e-11 3.9e-08 33.4 2.4 1 26 275 300 275 300 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF83-211 - 516 1.8e-105 341.0 119.1 9 16 5.3e-10 2.6e-07 30.8 0.7 1 26 303 328 303 328 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF83-211 - 516 1.8e-105 341.0 119.1 10 16 6.8e-10 3.3e-07 30.4 0.3 1 25 331 355 331 356 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF83-211 - 516 1.8e-105 341.0 119.1 11 16 1.1e-09 5.2e-07 29.8 0.1 2 25 360 383 359 384 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF83-211 - 516 1.8e-105 341.0 119.1 12 16 7.9e-11 3.8e-08 33.4 1.9 1 25 387 411 387 412 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF83-211 - 516 1.8e-105 341.0 119.1 13 16 2.7e-08 1.3e-05 25.4 0.2 2 24 416 438 415 439 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF83-211 - 516 1.8e-105 341.0 119.1 14 16 1.4e-09 6.8e-07 29.4 1.9 2 25 444 467 443 467 0.89 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF83-211 - 516 1.8e-105 341.0 119.1 15 16 2e-06 0.00096 19.5 2.8 1 24 471 494 471 495 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF83-211 - 516 1.8e-105 341.0 119.1 16 16 0.02 9.8 6.8 0.2 2 14 500 512 499 516 0.84 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZNF83-211 - 516 1.9e-82 267.4 121.8 1 15 7.2 3.5e+03 -1.2 0.8 7 23 99 115 93 115 0.73 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF83-211 - 516 1.9e-82 267.4 121.8 2 15 3.4e-09 1.7e-06 28.2 0.5 1 23 121 143 121 143 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF83-211 - 516 1.9e-82 267.4 121.8 3 15 3.4e-07 0.00017 21.9 3.7 1 23 149 171 149 171 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF83-211 - 516 1.9e-82 267.4 121.8 4 15 6.2e-09 3e-06 27.4 0.9 1 23 177 199 177 199 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF83-211 - 516 1.9e-82 267.4 121.8 5 15 2.2e-06 0.0011 19.3 2.6 1 23 205 227 205 227 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF83-211 - 516 1.9e-82 267.4 121.8 6 15 1.5e-08 7.1e-06 26.2 0.3 1 23 233 255 233 255 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF83-211 - 516 1.9e-82 267.4 121.8 7 15 7e-07 0.00034 20.9 4.6 1 23 261 283 261 283 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF83-211 - 516 1.9e-82 267.4 121.8 8 15 3.7e-09 1.8e-06 28.1 1.5 1 23 289 311 289 311 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF83-211 - 516 1.9e-82 267.4 121.8 9 15 3.7e-09 1.8e-06 28.1 1.5 1 23 317 339 317 339 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF83-211 - 516 1.9e-82 267.4 121.8 10 15 8.5e-09 4.1e-06 26.9 0.3 1 23 345 367 345 367 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF83-211 - 516 1.9e-82 267.4 121.8 11 15 2.7e-08 1.3e-05 25.3 3.3 1 23 373 395 373 395 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF83-211 - 516 1.9e-82 267.4 121.8 12 15 2.6e-08 1.3e-05 25.4 0.4 1 23 401 423 401 423 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF83-211 - 516 1.9e-82 267.4 121.8 13 15 8.6e-07 0.00042 20.6 1.0 1 23 429 451 429 451 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF83-211 - 516 1.9e-82 267.4 121.8 14 15 2.7e-07 0.00013 22.2 1.5 1 23 457 479 457 479 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF83-211 - 516 1.9e-82 267.4 121.8 15 15 1.2e-07 5.6e-05 23.4 1.9 1 23 485 507 485 507 0.98 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZNF83-211 - 516 5.2e-48 157.5 107.1 1 14 1.1e-05 0.0052 17.5 0.4 1 23 121 143 121 144 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF83-211 - 516 5.2e-48 157.5 107.1 2 14 3.2e-05 0.016 16.0 2.6 1 23 149 171 149 172 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF83-211 - 516 5.2e-48 157.5 107.1 3 14 2.5e-05 0.012 16.4 0.8 1 23 177 199 177 200 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF83-211 - 516 5.2e-48 157.5 107.1 4 14 0.0002 0.097 13.6 2.0 1 23 205 227 205 228 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF83-211 - 516 5.2e-48 157.5 107.1 5 14 1.9e-05 0.0091 16.8 0.3 1 23 233 255 233 256 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF83-211 - 516 5.2e-48 157.5 107.1 6 14 0.00064 0.31 12.0 3.6 1 23 261 283 261 284 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF83-211 - 516 5.2e-48 157.5 107.1 7 14 2.7e-06 0.0013 19.4 1.7 1 23 289 311 289 312 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF83-211 - 516 5.2e-48 157.5 107.1 8 14 2.7e-06 0.0013 19.4 1.7 1 23 317 339 317 340 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF83-211 - 516 5.2e-48 157.5 107.1 9 14 9e-06 0.0043 17.8 0.2 1 23 345 367 345 368 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF83-211 - 516 5.2e-48 157.5 107.1 10 14 0.00017 0.084 13.8 2.4 1 23 373 395 373 396 0.90 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF83-211 - 516 5.2e-48 157.5 107.1 11 14 5e-06 0.0024 18.5 0.5 1 23 401 423 401 424 0.89 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF83-211 - 516 5.2e-48 157.5 107.1 12 14 6.8e-05 0.033 15.0 0.8 1 23 429 451 429 452 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF83-211 - 516 5.2e-48 157.5 107.1 13 14 0.00014 0.068 14.0 1.1 1 23 457 479 457 480 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF83-211 - 516 5.2e-48 157.5 107.1 14 14 5e-05 0.024 15.4 1.0 1 23 485 507 485 508 0.96 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF83-211 - 516 3.2e-21 74.8 123.3 1 15 3.4 1.7e+03 -0.8 0.1 1 12 92 103 92 105 0.78 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF83-211 - 516 3.2e-21 74.8 123.3 2 15 0.0012 0.6 10.2 0.3 2 22 121 141 120 145 0.84 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF83-211 - 516 3.2e-21 74.8 123.3 3 15 0.0096 4.7 7.3 5.5 2 13 149 160 149 170 0.74 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF83-211 - 516 3.2e-21 74.8 123.3 4 15 0.0016 0.77 9.8 2.9 2 14 177 189 177 199 0.79 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF83-211 - 516 3.2e-21 74.8 123.3 5 15 0.0025 1.2 9.2 4.5 2 21 205 224 205 227 0.76 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF83-211 - 516 3.2e-21 74.8 123.3 6 15 0.0013 0.64 10.1 0.4 2 12 233 243 233 252 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF83-211 - 516 3.2e-21 74.8 123.3 7 15 0.005 2.4 8.2 4.2 2 13 261 272 261 283 0.81 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF83-211 - 516 3.2e-21 74.8 123.3 8 15 0.0008 0.39 10.8 1.0 2 12 289 299 289 307 0.92 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF83-211 - 516 3.2e-21 74.8 123.3 9 15 0.0008 0.39 10.8 1.0 2 12 317 327 317 335 0.92 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF83-211 - 516 3.2e-21 74.8 123.3 10 15 0.00035 0.17 11.9 0.3 2 12 345 355 345 364 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF83-211 - 516 3.2e-21 74.8 123.3 11 15 0.032 15 5.7 4.6 2 12 373 383 373 394 0.92 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF83-211 - 516 3.2e-21 74.8 123.3 12 15 0.00033 0.16 12.0 0.8 2 12 401 411 401 412 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF83-211 - 516 3.2e-21 74.8 123.3 13 15 0.00015 0.074 13.1 0.8 1 22 428 449 428 453 0.79 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF83-211 - 516 3.2e-21 74.8 123.3 14 15 0.00036 0.18 11.9 1.0 2 21 457 476 457 481 0.87 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF83-211 - 516 3.2e-21 74.8 123.3 15 15 0.0018 0.89 9.6 1.2 1 12 484 495 484 495 0.92 C2H2-type zinc finger Zn-ribbon_8 PF09723.10 40 ZNF83-211 - 516 1.2e-19 70.1 76.7 1 15 0.073 35 4.6 0.8 5 15 120 130 92 133 0.52 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF83-211 - 516 1.2e-19 70.1 76.7 2 15 0.00033 0.16 12.1 2.4 5 34 120 156 119 156 0.92 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF83-211 - 516 1.2e-19 70.1 76.7 3 15 0.0012 0.56 10.4 0.3 6 20 149 163 148 171 0.84 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF83-211 - 516 1.2e-19 70.1 76.7 4 15 1.7e-05 0.0082 16.2 3.7 6 34 177 212 176 212 0.92 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF83-211 - 516 1.2e-19 70.1 76.7 5 15 0.00014 0.069 13.3 4.8 6 34 205 240 204 244 0.81 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF83-211 - 516 1.2e-19 70.1 76.7 6 15 0.0053 2.6 8.3 0.4 6 16 233 243 232 254 0.88 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF83-211 - 516 1.2e-19 70.1 76.7 7 15 3.9e-05 0.019 15.1 3.2 6 34 261 296 260 301 0.90 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF83-211 - 516 1.2e-19 70.1 76.7 8 15 0.003 1.5 9.0 0.4 6 17 289 300 288 307 0.86 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF83-211 - 516 1.2e-19 70.1 76.7 9 15 0.00023 0.11 12.6 4.6 6 34 317 352 316 356 0.84 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF83-211 - 516 1.2e-19 70.1 76.7 10 15 0.0059 2.9 8.1 5.3 6 33 345 379 344 380 0.77 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF83-211 - 516 1.2e-19 70.1 76.7 11 15 0.0034 1.6 8.9 5.9 6 34 373 408 371 412 0.89 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF83-211 - 516 1.2e-19 70.1 76.7 12 15 0.006 2.9 8.1 0.6 6 16 401 411 399 417 0.91 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF83-211 - 516 1.2e-19 70.1 76.7 13 15 0.00017 0.085 13.0 3.2 6 34 429 464 428 468 0.87 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF83-211 - 516 1.2e-19 70.1 76.7 14 15 0.012 6 7.1 0.3 6 19 457 470 455 479 0.81 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF83-211 - 516 1.2e-19 70.1 76.7 15 15 0.031 15 5.8 0.5 6 17 485 502 483 516 0.69 Zinc ribbon domain XPA_N PF01286.18 32 ZNF83-211 - 516 3.6e-15 55.7 46.1 1 14 0.23 1.1e+02 2.9 0.3 3 12 122 131 120 136 0.88 XPA protein N-terminal XPA_N PF01286.18 32 ZNF83-211 - 516 3.6e-15 55.7 46.1 2 14 0.044 21 5.2 0.1 3 12 150 159 148 166 0.89 XPA protein N-terminal XPA_N PF01286.18 32 ZNF83-211 - 516 3.6e-15 55.7 46.1 3 14 0.078 38 4.5 0.1 3 12 178 187 176 194 0.88 XPA protein N-terminal XPA_N PF01286.18 32 ZNF83-211 - 516 3.6e-15 55.7 46.1 4 14 0.044 21 5.3 0.1 3 12 206 215 204 222 0.89 XPA protein N-terminal XPA_N PF01286.18 32 ZNF83-211 - 516 3.6e-15 55.7 46.1 5 14 0.028 14 5.9 0.1 3 19 234 251 232 252 0.83 XPA protein N-terminal XPA_N PF01286.18 32 ZNF83-211 - 516 3.6e-15 55.7 46.1 6 14 2 9.5e+02 -0.0 0.1 3 11 262 270 259 273 0.65 XPA protein N-terminal XPA_N PF01286.18 32 ZNF83-211 - 516 3.6e-15 55.7 46.1 7 14 0.048 23 5.1 0.0 3 12 290 299 288 310 0.76 XPA protein N-terminal XPA_N PF01286.18 32 ZNF83-211 - 516 3.6e-15 55.7 46.1 8 14 0.048 23 5.1 0.0 3 12 318 327 316 338 0.76 XPA protein N-terminal XPA_N PF01286.18 32 ZNF83-211 - 516 3.6e-15 55.7 46.1 9 14 0.012 5.8 7.1 0.1 3 18 346 362 344 363 0.81 XPA protein N-terminal XPA_N PF01286.18 32 ZNF83-211 - 516 3.6e-15 55.7 46.1 10 14 0.0041 2 8.5 0.1 3 13 374 384 372 393 0.78 XPA protein N-terminal XPA_N PF01286.18 32 ZNF83-211 - 516 3.6e-15 55.7 46.1 11 14 0.0025 1.2 9.2 0.1 3 17 402 417 400 422 0.79 XPA protein N-terminal XPA_N PF01286.18 32 ZNF83-211 - 516 3.6e-15 55.7 46.1 12 14 0.082 40 4.4 0.1 3 11 430 438 428 444 0.87 XPA protein N-terminal XPA_N PF01286.18 32 ZNF83-211 - 516 3.6e-15 55.7 46.1 13 14 0.021 10 6.3 0.1 3 12 458 467 456 476 0.84 XPA protein N-terminal XPA_N PF01286.18 32 ZNF83-211 - 516 3.6e-15 55.7 46.1 14 14 0.003 1.5 9.0 0.1 3 18 486 502 485 505 0.85 XPA protein N-terminal zf-C2H2_jaz PF12171.8 27 ZNF83-211 - 516 7.3e-15 54.8 77.8 1 14 7e-05 0.034 14.5 0.8 1 22 120 141 120 141 0.95 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF83-211 - 516 7.3e-15 54.8 77.8 2 14 0.001 0.49 10.8 0.6 2 21 149 168 148 169 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF83-211 - 516 7.3e-15 54.8 77.8 3 14 0.047 23 5.4 0.6 2 22 177 197 176 197 0.90 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF83-211 - 516 7.3e-15 54.8 77.8 4 14 0.18 89 3.5 0.6 2 20 205 223 204 225 0.86 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF83-211 - 516 7.3e-15 54.8 77.8 5 14 0.085 41 4.6 0.1 2 21 233 252 232 253 0.91 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF83-211 - 516 7.3e-15 54.8 77.8 6 14 0.016 7.7 6.9 0.7 2 22 261 281 260 281 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF83-211 - 516 7.3e-15 54.8 77.8 7 14 0.00042 0.2 12.0 0.3 2 22 289 309 288 309 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF83-211 - 516 7.3e-15 54.8 77.8 8 14 0.00042 0.2 12.0 0.3 2 22 317 337 316 337 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF83-211 - 516 7.3e-15 54.8 77.8 9 14 0.0074 3.6 8.0 0.1 2 21 345 364 344 365 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF83-211 - 516 7.3e-15 54.8 77.8 10 14 0.0062 3 8.2 1.2 2 20 373 391 372 391 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF83-211 - 516 7.3e-15 54.8 77.8 11 14 0.11 51 4.3 0.4 2 18 401 417 400 421 0.76 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF83-211 - 516 7.3e-15 54.8 77.8 12 14 1.5 7.3e+02 0.6 0.1 2 11 429 438 428 447 0.91 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF83-211 - 516 7.3e-15 54.8 77.8 13 14 0.0058 2.8 8.3 0.1 2 20 457 475 456 475 0.96 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF83-211 - 516 7.3e-15 54.8 77.8 14 14 0.024 11 6.4 0.8 2 22 485 505 484 505 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_11 PF16622.5 29 ZNF83-211 - 516 2.5e-13 49.5 58.7 1 14 2.7 1.3e+03 -0.8 0.2 5 26 121 142 118 143 0.72 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF83-211 - 516 2.5e-13 49.5 58.7 2 14 0.028 13 5.6 0.3 5 26 149 170 146 171 0.92 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF83-211 - 516 2.5e-13 49.5 58.7 3 14 0.064 31 4.4 0.2 5 26 177 198 174 199 0.86 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF83-211 - 516 2.5e-13 49.5 58.7 4 14 0.054 26 4.7 0.3 5 26 205 226 202 227 0.88 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF83-211 - 516 2.5e-13 49.5 58.7 5 14 0.028 13 5.6 0.1 6 26 234 254 231 255 0.92 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF83-211 - 516 2.5e-13 49.5 58.7 6 14 1.2 5.6e+02 0.4 1.0 5 26 261 282 258 283 0.82 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF83-211 - 516 2.5e-13 49.5 58.7 7 14 0.00067 0.33 10.8 0.1 5 26 289 310 286 311 0.93 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF83-211 - 516 2.5e-13 49.5 58.7 8 14 0.00067 0.33 10.8 0.1 5 26 317 338 314 339 0.93 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF83-211 - 516 2.5e-13 49.5 58.7 9 14 0.0018 0.89 9.4 0.1 5 26 345 366 342 367 0.93 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF83-211 - 516 2.5e-13 49.5 58.7 10 14 0.3 1.5e+02 2.3 0.1 5 26 373 394 370 395 0.89 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF83-211 - 516 2.5e-13 49.5 58.7 11 14 0.039 19 5.1 0.0 5 26 401 422 398 423 0.86 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF83-211 - 516 2.5e-13 49.5 58.7 12 14 0.00044 0.21 11.4 0.1 4 26 428 450 426 451 0.93 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF83-211 - 516 2.5e-13 49.5 58.7 13 14 0.0007 0.34 10.7 0.2 5 26 457 478 454 479 0.91 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF83-211 - 516 2.5e-13 49.5 58.7 14 14 0.19 92 2.9 0.3 5 23 485 503 482 506 0.81 zinc-finger C2H2-type C1_1 PF00130.22 53 ZNF83-211 - 516 6e-13 48.5 72.8 1 12 4.9 2.4e+03 -1.5 0.2 14 39 73 103 63 105 0.60 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF83-211 - 516 6e-13 48.5 72.8 2 12 7.1e-05 0.034 14.0 4.0 1 40 111 160 111 167 0.91 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF83-211 - 516 6e-13 48.5 72.8 3 12 0.0001 0.048 13.5 2.5 7 40 172 216 163 219 0.85 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF83-211 - 516 6e-13 48.5 72.8 4 12 0.0003 0.15 12.0 2.1 6 40 228 272 219 276 0.86 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF83-211 - 516 6e-13 48.5 72.8 5 12 0.04 19 5.2 0.6 5 24 283 301 275 305 0.76 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF83-211 - 516 6e-13 48.5 72.8 6 12 0.0023 1.1 9.2 0.3 2 24 307 329 307 333 0.88 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF83-211 - 516 6e-13 48.5 72.8 7 12 0.00061 0.3 11.0 1.7 2 36 335 380 335 382 0.87 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF83-211 - 516 6e-13 48.5 72.8 8 12 0.0042 2 8.3 2.0 3 37 365 409 363 410 0.80 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF83-211 - 516 6e-13 48.5 72.8 9 12 0.00011 0.052 13.4 1.6 1 37 391 437 387 439 0.84 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF83-211 - 516 6e-13 48.5 72.8 10 12 0.0014 0.69 9.8 2.8 2 36 419 464 418 469 0.86 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF83-211 - 516 6e-13 48.5 72.8 11 12 0.0041 2 8.4 4.5 1 37 446 493 446 497 0.88 Phorbol esters/diacylglycerol binding domain (C1 domain) C1_1 PF00130.22 53 ZNF83-211 - 516 6e-13 48.5 72.8 12 12 0.098 47 4.0 1.3 4 22 478 502 475 516 0.62 Phorbol esters/diacylglycerol binding domain (C1 domain) zf_UBZ PF18439.1 32 ZNF83-211 - 516 1.5e-12 46.9 58.0 1 14 0.0098 4.7 6.9 0.1 2 21 120 140 119 140 0.87 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF83-211 - 516 1.5e-12 46.9 58.0 2 14 0.047 23 4.7 0.2 3 13 149 159 147 167 0.84 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF83-211 - 516 1.5e-12 46.9 58.0 3 14 0.021 10 5.8 0.3 3 20 177 195 175 196 0.77 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF83-211 - 516 1.5e-12 46.9 58.0 4 14 0.028 14 5.4 0.3 3 14 205 216 203 224 0.78 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF83-211 - 516 1.5e-12 46.9 58.0 5 14 0.025 12 5.6 0.1 3 15 233 245 231 252 0.83 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF83-211 - 516 1.5e-12 46.9 58.0 6 14 0.62 3e+02 1.1 0.4 3 20 261 279 259 280 0.77 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF83-211 - 516 1.5e-12 46.9 58.0 7 14 0.016 7.6 6.2 0.1 3 14 289 300 287 307 0.85 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF83-211 - 516 1.5e-12 46.9 58.0 8 14 0.016 7.6 6.2 0.1 3 14 317 328 315 335 0.85 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF83-211 - 516 1.5e-12 46.9 58.0 9 14 0.0094 4.6 6.9 0.1 3 16 345 359 343 364 0.78 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF83-211 - 516 1.5e-12 46.9 58.0 10 14 0.0066 3.2 7.4 0.6 3 15 373 385 371 392 0.80 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF83-211 - 516 1.5e-12 46.9 58.0 11 14 0.0018 0.88 9.2 0.1 3 15 401 413 399 417 0.86 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF83-211 - 516 1.5e-12 46.9 58.0 12 14 0.027 13 5.5 0.1 3 16 429 442 427 447 0.75 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF83-211 - 516 1.5e-12 46.9 58.0 13 14 0.019 9.1 6.0 0.1 3 18 457 473 455 476 0.79 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF83-211 - 516 1.5e-12 46.9 58.0 14 14 0.047 23 4.7 0.1 2 14 484 496 483 507 0.83 Ubiquitin-Binding Zinc Finger zinc_ribbon_15 PF17032.5 86 ZNF83-211 - 516 7.3e-12 45.9 57.9 1 9 0.0011 0.55 11.0 3.6 31 77 114 160 90 167 0.81 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF83-211 - 516 7.3e-12 45.9 57.9 2 9 0.001 0.5 11.1 2.0 32 76 171 215 166 220 0.86 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF83-211 - 516 7.3e-12 45.9 57.9 3 9 0.0014 0.67 10.8 2.0 31 78 198 245 191 248 0.85 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF83-211 - 516 7.3e-12 45.9 57.9 4 9 0.014 6.6 7.6 1.1 33 76 228 271 215 275 0.87 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF83-211 - 516 7.3e-12 45.9 57.9 5 9 0.013 6.2 7.6 4.7 30 78 253 301 235 304 0.78 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF83-211 - 516 7.3e-12 45.9 57.9 6 9 4.5e-05 0.022 15.5 1.1 26 78 305 357 303 362 0.91 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF83-211 - 516 7.3e-12 45.9 57.9 7 9 0.0012 0.6 10.9 2.1 35 78 370 413 362 418 0.86 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF83-211 - 516 7.3e-12 45.9 57.9 8 9 0.00011 0.055 14.2 0.8 29 76 420 467 415 475 0.89 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF83-211 - 516 7.3e-12 45.9 57.9 9 9 0.13 64 4.4 0.3 32 68 479 515 472 516 0.78 zinc-ribbon family HypA PF01155.19 112 ZNF83-211 - 516 3.6e-08 33.4 46.8 1 10 0.0014 0.68 10.0 1.5 64 95 114 157 90 163 0.79 Hydrogenase/urease nickel incorporation, metallochaperone, hypA HypA PF01155.19 112 ZNF83-211 - 516 3.6e-08 33.4 46.8 2 10 0.074 36 4.4 7.1 87 99 195 217 156 275 0.58 Hydrogenase/urease nickel incorporation, metallochaperone, hypA HypA PF01155.19 112 ZNF83-211 - 516 3.6e-08 33.4 46.8 3 10 0.0016 0.77 9.8 1.4 50 94 241 296 236 306 0.78 Hydrogenase/urease nickel incorporation, metallochaperone, hypA HypA PF01155.19 112 ZNF83-211 - 516 3.6e-08 33.4 46.8 4 10 0.0095 4.6 7.3 3.7 63 93 309 351 274 358 0.54 Hydrogenase/urease nickel incorporation, metallochaperone, hypA HypA PF01155.19 112 ZNF83-211 - 516 3.6e-08 33.4 46.8 5 10 0.0044 2.1 8.4 0.5 64 95 338 381 324 389 0.77 Hydrogenase/urease nickel incorporation, metallochaperone, hypA HypA PF01155.19 112 ZNF83-211 - 516 3.6e-08 33.4 46.8 6 10 0.0067 3.3 7.8 3.7 46 94 349 408 343 413 0.80 Hydrogenase/urease nickel incorporation, metallochaperone, hypA HypA PF01155.19 112 ZNF83-211 - 516 3.6e-08 33.4 46.8 7 10 0.005 2.4 8.2 0.6 64 94 394 436 381 441 0.79 Hydrogenase/urease nickel incorporation, metallochaperone, hypA HypA PF01155.19 112 ZNF83-211 - 516 3.6e-08 33.4 46.8 8 10 0.002 0.99 9.5 0.6 63 95 421 465 408 472 0.77 Hydrogenase/urease nickel incorporation, metallochaperone, hypA HypA PF01155.19 112 ZNF83-211 - 516 3.6e-08 33.4 46.8 9 10 0.0021 1 9.4 1.1 64 94 450 492 441 496 0.80 Hydrogenase/urease nickel incorporation, metallochaperone, hypA HypA PF01155.19 112 ZNF83-211 - 516 3.6e-08 33.4 46.8 10 10 0.22 1e+02 2.9 0.1 64 83 478 497 470 515 0.77 Hydrogenase/urease nickel incorporation, metallochaperone, hypA Zf_RING PF16744.5 73 ZNF83-211 - 516 4.2e-07 30.0 55.2 1 14 0.02 9.6 6.4 0.2 14 32 115 133 108 144 0.86 KIAA1045 RING finger Zf_RING PF16744.5 73 ZNF83-211 - 516 4.2e-07 30.0 55.2 2 14 0.0054 2.6 8.2 0.2 13 32 142 161 134 169 0.88 KIAA1045 RING finger Zf_RING PF16744.5 73 ZNF83-211 - 516 4.2e-07 30.0 55.2 3 14 0.19 90 3.3 0.1 13 31 170 188 163 196 0.87 KIAA1045 RING finger Zf_RING PF16744.5 73 ZNF83-211 - 516 4.2e-07 30.0 55.2 4 14 0.0054 2.6 8.2 0.3 13 32 198 217 187 227 0.86 KIAA1045 RING finger Zf_RING PF16744.5 73 ZNF83-211 - 516 4.2e-07 30.0 55.2 5 14 0.19 93 3.2 0.1 13 32 226 245 220 252 0.87 KIAA1045 RING finger Zf_RING PF16744.5 73 ZNF83-211 - 516 4.2e-07 30.0 55.2 6 14 0.00045 0.22 11.7 0.5 14 32 255 273 249 282 0.87 KIAA1045 RING finger Zf_RING PF16744.5 73 ZNF83-211 - 516 4.2e-07 30.0 55.2 7 14 0.11 55 4.0 0.1 13 32 282 302 276 309 0.84 KIAA1045 RING finger Zf_RING PF16744.5 73 ZNF83-211 - 516 4.2e-07 30.0 55.2 8 14 0.11 54 4.0 0.2 13 32 310 330 306 339 0.83 KIAA1045 RING finger Zf_RING PF16744.5 73 ZNF83-211 - 516 4.2e-07 30.0 55.2 9 14 0.28 1.4e+02 2.7 1.0 13 32 338 357 331 381 0.85 KIAA1045 RING finger Zf_RING PF16744.5 73 ZNF83-211 - 516 4.2e-07 30.0 55.2 10 14 2.2 1e+03 -0.1 0.1 15 31 368 384 364 390 0.78 KIAA1045 RING finger Zf_RING PF16744.5 73 ZNF83-211 - 516 4.2e-07 30.0 55.2 11 14 0.17 83 3.4 0.1 13 32 394 413 383 420 0.84 KIAA1045 RING finger Zf_RING PF16744.5 73 ZNF83-211 - 516 4.2e-07 30.0 55.2 12 14 0.13 62 3.8 0.1 13 30 422 439 420 455 0.79 KIAA1045 RING finger Zf_RING PF16744.5 73 ZNF83-211 - 516 4.2e-07 30.0 55.2 13 14 2.1 1e+03 -0.1 0.0 12 29 449 466 440 476 0.83 KIAA1045 RING finger Zf_RING PF16744.5 73 ZNF83-211 - 516 4.2e-07 30.0 55.2 14 14 0.32 1.5e+02 2.5 0.2 13 33 478 498 468 514 0.82 KIAA1045 RING finger # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF83-211.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF83-211.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF83-211.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF83-211.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF83-211.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:15:09 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- KRAB PF01352.27 42 ZNF83-212 - 97 3e-24 84.4 0.0 1 1 2.2e-28 4e-24 84.0 0.0 2 42 24 64 23 64 0.98 KRAB box # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF83-212.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF83-212.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF83-212.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF83-212.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF83-212.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:15:10 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- KRAB PF01352.27 42 ZNF83-213 - 96 2.4e-24 84.7 0.0 1 1 4.3e-28 3.9e-24 84.0 0.0 2 42 24 64 23 64 0.98 KRAB box # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF83-213.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF83-213.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF83-213.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF83-213.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF83-213.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:15:10 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF83-214.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF83-214.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF83-214.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF83-214.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF83-214.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:15:10 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- KRAB PF01352.27 42 ZNF83-215 - 125 5e-29 99.7 0.1 1 2 2.6e-32 4.6e-28 96.6 0.1 1 42 7 48 7 48 0.98 KRAB box KRAB PF01352.27 42 ZNF83-215 - 125 5e-29 99.7 0.1 2 2 0.025 4.5e+02 0.6 0.0 27 36 70 79 66 80 0.79 KRAB box # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF83-215.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF83-215.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF83-215.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF83-215.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF83-215.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:15:11 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- KRAB PF01352.27 42 ZNF83-216 - 55 4.8e-29 99.7 0.1 1 1 3.1e-33 5.5e-29 99.5 0.1 1 42 7 48 7 48 0.98 KRAB box # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF83-216.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF83-216.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF83-216.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF83-216.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF83-216.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:15:11 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- KRAB PF01352.27 42 ZNF83-217 - 78 1.2e-28 98.5 0.1 1 1 8.6e-33 1.5e-28 98.1 0.1 1 42 7 48 7 48 0.98 KRAB box # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF83-217.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF83-217.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF83-217.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF83-217.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF83-217.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:15:11 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- KRAB PF01352.27 42 ZNF83-218 - 95 2.3e-24 84.7 0.0 1 1 4.2e-28 3.8e-24 84.1 0.0 2 42 24 64 23 64 0.98 KRAB box # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF83-218.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF83-218.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF83-218.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF83-218.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF83-218.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:15:12 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- KRAB PF01352.27 42 ZNF83-219 - 78 1.2e-28 98.5 0.1 1 1 8.6e-33 1.5e-28 98.1 0.1 1 42 7 48 7 48 0.98 KRAB box # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF83-219.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF83-219.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF83-219.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF83-219.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF83-219.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:15:12 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZNF837-201 - 531 3.3e-53 175.8 63.4 1 13 3.2 3.6e+03 -1.3 0.1 9 21 133 149 130 151 0.71 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF837-201 - 531 3.3e-53 175.8 63.4 2 13 3 3.4e+03 -1.2 0.2 16 24 226 234 222 235 0.82 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF837-201 - 531 3.3e-53 175.8 63.4 3 13 0.54 6e+02 1.1 0.1 16 23 248 255 241 257 0.76 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF837-201 - 531 3.3e-53 175.8 63.4 4 13 0.0012 1.3 9.6 0.1 13 26 269 282 263 282 0.86 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF837-201 - 531 3.3e-53 175.8 63.4 5 13 4.4e-11 4.9e-08 33.0 0.1 2 26 286 310 285 310 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF837-201 - 531 3.3e-53 175.8 63.4 6 13 0.059 66 4.2 1.1 1 23 313 347 313 350 0.70 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF837-201 - 531 3.3e-53 175.8 63.4 7 13 3.7e-05 0.041 14.3 0.3 11 24 359 372 358 373 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF837-201 - 531 3.3e-53 175.8 63.4 8 13 1.2e-12 1.4e-09 37.9 0.8 1 25 377 401 377 402 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF837-201 - 531 3.3e-53 175.8 63.4 9 13 5.9e-11 6.6e-08 32.6 1.0 1 25 405 429 405 429 0.98 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF837-201 - 531 3.3e-53 175.8 63.4 10 13 1.3e-08 1.5e-05 25.2 0.1 1 24 433 456 433 457 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF837-201 - 531 3.3e-53 175.8 63.4 11 13 9.9e-09 1.1e-05 25.6 0.2 2 26 462 486 461 486 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF837-201 - 531 3.3e-53 175.8 63.4 12 13 1.2e-10 1.3e-07 31.7 0.1 1 25 489 513 489 514 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF837-201 - 531 3.3e-53 175.8 63.4 13 13 1.2 1.4e+03 -0.0 0.6 1 11 517 527 517 528 0.88 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZNF837-201 - 531 1.4e-44 148.1 61.3 1 11 8.5 9.6e+03 -2.6 0.0 10 19 124 133 123 134 0.80 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF837-201 - 531 1.4e-44 148.1 61.3 2 11 0.12 1.4e+02 3.2 0.3 3 11 227 235 226 240 0.84 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF837-201 - 531 1.4e-44 148.1 61.3 3 11 0.39 4.4e+02 1.7 0.2 2 9 248 255 248 259 0.82 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF837-201 - 531 1.4e-44 148.1 61.3 4 11 1.1e-08 1.2e-05 25.5 0.3 1 23 271 293 271 293 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF837-201 - 531 1.4e-44 148.1 61.3 5 11 6.1e-08 6.9e-05 23.1 1.3 1 23 299 321 299 321 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF837-201 - 531 1.4e-44 148.1 61.3 6 11 5.4e-05 0.06 13.8 0.3 1 23 363 385 363 385 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF837-201 - 531 1.4e-44 148.1 61.3 7 11 2.7e-10 3e-07 30.5 0.5 1 23 391 413 391 413 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF837-201 - 531 1.4e-44 148.1 61.3 8 11 9.8e-07 0.0011 19.3 0.1 1 23 419 441 419 441 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF837-201 - 531 1.4e-44 148.1 61.3 9 11 2.2e-06 0.0025 18.2 1.6 3 23 449 469 447 469 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF837-201 - 531 1.4e-44 148.1 61.3 10 11 1.5e-08 1.7e-05 25.0 1.8 1 23 475 497 475 497 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF837-201 - 531 1.4e-44 148.1 61.3 11 11 4.5e-09 5e-06 26.7 0.4 1 23 503 525 503 525 0.98 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZNF837-201 - 531 6.5e-27 91.9 64.2 1 10 0.43 4.8e+02 2.1 0.2 2 11 226 235 225 240 0.80 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF837-201 - 531 6.5e-27 91.9 64.2 2 10 0.88 9.8e+02 1.1 0.2 2 9 248 255 247 259 0.84 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF837-201 - 531 6.5e-27 91.9 64.2 3 10 7.5e-06 0.0085 16.9 0.3 1 23 271 293 271 294 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF837-201 - 531 6.5e-27 91.9 64.2 4 10 3.3e-06 0.0037 18.0 1.5 1 23 299 321 299 322 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF837-201 - 531 6.5e-27 91.9 64.2 5 10 0.046 51 5.1 0.5 1 23 363 385 363 386 0.91 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF837-201 - 531 6.5e-27 91.9 64.2 6 10 2.9e-07 0.00032 21.3 0.5 1 23 391 413 391 414 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF837-201 - 531 6.5e-27 91.9 64.2 7 10 4.1e-06 0.0046 17.7 0.1 1 23 419 441 419 442 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF837-201 - 531 6.5e-27 91.9 64.2 8 10 5.4e-06 0.006 17.3 1.6 2 23 448 469 447 470 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF837-201 - 531 6.5e-27 91.9 64.2 9 10 1.5e-06 0.0017 19.0 1.4 1 23 475 497 475 498 0.97 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF837-201 - 531 6.5e-27 91.9 64.2 10 10 1.6e-05 0.018 15.8 0.2 1 23 503 525 503 526 0.96 C2H2-type zinc finger Zn-ribbon_8 PF09723.10 40 ZNF837-201 - 531 7.7e-08 32.3 59.3 1 8 5.5e-06 0.0062 16.6 4.7 8 36 227 256 223 259 0.82 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF837-201 - 531 7.7e-08 32.3 59.3 2 8 2.2e-05 0.025 14.7 3.1 6 38 271 310 270 312 0.91 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF837-201 - 531 7.7e-08 32.3 59.3 3 8 1.1 1.3e+03 -0.4 0.3 29 34 341 346 331 352 0.70 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF837-201 - 531 7.7e-08 32.3 59.3 4 8 6.2e-05 0.07 13.3 2.9 6 35 363 399 361 404 0.84 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF837-201 - 531 7.7e-08 32.3 59.3 5 8 7.2e-05 0.081 13.1 2.0 6 34 391 426 390 431 0.84 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF837-201 - 531 7.7e-08 32.3 59.3 6 8 0.0078 8.8 6.5 3.8 6 36 419 456 418 459 0.90 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF837-201 - 531 7.7e-08 32.3 59.3 7 8 0.0021 2.3 8.4 4.9 6 38 447 486 446 488 0.78 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF837-201 - 531 7.7e-08 32.3 59.3 8 8 0.011 12 6.1 0.1 6 20 503 517 502 524 0.81 Zinc ribbon domain zf-C2H2_jaz PF12171.8 27 ZNF837-201 - 531 3.9e-07 30.2 19.2 1 8 0.012 14 6.1 0.0 2 22 271 291 270 291 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF837-201 - 531 3.9e-07 30.2 19.2 2 8 0.62 6.9e+02 0.7 0.5 2 11 299 308 298 322 0.83 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF837-201 - 531 3.9e-07 30.2 19.2 3 8 0.91 1e+03 0.2 0.1 2 11 363 372 362 373 0.88 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF837-201 - 531 3.9e-07 30.2 19.2 4 8 0.0017 1.9 8.8 0.1 2 24 391 413 390 414 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF837-201 - 531 3.9e-07 30.2 19.2 5 8 0.00018 0.2 12.0 0.0 2 22 419 439 418 439 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF837-201 - 531 3.9e-07 30.2 19.2 6 8 0.017 19 5.7 0.1 4 22 449 467 447 467 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF837-201 - 531 3.9e-07 30.2 19.2 7 8 0.24 2.7e+02 2.0 0.1 2 24 475 497 474 497 0.90 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF837-201 - 531 3.9e-07 30.2 19.2 8 8 0.96 1.1e+03 0.1 0.0 2 22 503 523 502 523 0.88 Zinc-finger double-stranded RNA-binding # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF837-201.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF837-201.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF837-201.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF837-201.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF837-201.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:15:13 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZNF837-202 - 531 3.3e-53 175.8 63.4 1 13 3.2 3.6e+03 -1.3 0.1 9 21 133 149 130 151 0.71 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF837-202 - 531 3.3e-53 175.8 63.4 2 13 3 3.4e+03 -1.2 0.2 16 24 226 234 222 235 0.82 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF837-202 - 531 3.3e-53 175.8 63.4 3 13 0.54 6e+02 1.1 0.1 16 23 248 255 241 257 0.76 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF837-202 - 531 3.3e-53 175.8 63.4 4 13 0.0012 1.3 9.6 0.1 13 26 269 282 263 282 0.86 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF837-202 - 531 3.3e-53 175.8 63.4 5 13 4.4e-11 4.9e-08 33.0 0.1 2 26 286 310 285 310 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF837-202 - 531 3.3e-53 175.8 63.4 6 13 0.059 66 4.2 1.1 1 23 313 347 313 350 0.70 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF837-202 - 531 3.3e-53 175.8 63.4 7 13 3.7e-05 0.041 14.3 0.3 11 24 359 372 358 373 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF837-202 - 531 3.3e-53 175.8 63.4 8 13 1.2e-12 1.4e-09 37.9 0.8 1 25 377 401 377 402 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF837-202 - 531 3.3e-53 175.8 63.4 9 13 5.9e-11 6.6e-08 32.6 1.0 1 25 405 429 405 429 0.98 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF837-202 - 531 3.3e-53 175.8 63.4 10 13 1.3e-08 1.5e-05 25.2 0.1 1 24 433 456 433 457 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF837-202 - 531 3.3e-53 175.8 63.4 11 13 9.9e-09 1.1e-05 25.6 0.2 2 26 462 486 461 486 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF837-202 - 531 3.3e-53 175.8 63.4 12 13 1.2e-10 1.3e-07 31.7 0.1 1 25 489 513 489 514 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF837-202 - 531 3.3e-53 175.8 63.4 13 13 1.2 1.4e+03 -0.0 0.6 1 11 517 527 517 528 0.88 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZNF837-202 - 531 1.4e-44 148.1 61.3 1 11 8.5 9.6e+03 -2.6 0.0 10 19 124 133 123 134 0.80 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF837-202 - 531 1.4e-44 148.1 61.3 2 11 0.12 1.4e+02 3.2 0.3 3 11 227 235 226 240 0.84 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF837-202 - 531 1.4e-44 148.1 61.3 3 11 0.39 4.4e+02 1.7 0.2 2 9 248 255 248 259 0.82 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF837-202 - 531 1.4e-44 148.1 61.3 4 11 1.1e-08 1.2e-05 25.5 0.3 1 23 271 293 271 293 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF837-202 - 531 1.4e-44 148.1 61.3 5 11 6.1e-08 6.9e-05 23.1 1.3 1 23 299 321 299 321 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF837-202 - 531 1.4e-44 148.1 61.3 6 11 5.4e-05 0.06 13.8 0.3 1 23 363 385 363 385 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF837-202 - 531 1.4e-44 148.1 61.3 7 11 2.7e-10 3e-07 30.5 0.5 1 23 391 413 391 413 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF837-202 - 531 1.4e-44 148.1 61.3 8 11 9.8e-07 0.0011 19.3 0.1 1 23 419 441 419 441 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF837-202 - 531 1.4e-44 148.1 61.3 9 11 2.2e-06 0.0025 18.2 1.6 3 23 449 469 447 469 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF837-202 - 531 1.4e-44 148.1 61.3 10 11 1.5e-08 1.7e-05 25.0 1.8 1 23 475 497 475 497 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF837-202 - 531 1.4e-44 148.1 61.3 11 11 4.5e-09 5e-06 26.7 0.4 1 23 503 525 503 525 0.98 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZNF837-202 - 531 6.5e-27 91.9 64.2 1 10 0.43 4.8e+02 2.1 0.2 2 11 226 235 225 240 0.80 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF837-202 - 531 6.5e-27 91.9 64.2 2 10 0.88 9.8e+02 1.1 0.2 2 9 248 255 247 259 0.84 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF837-202 - 531 6.5e-27 91.9 64.2 3 10 7.5e-06 0.0085 16.9 0.3 1 23 271 293 271 294 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF837-202 - 531 6.5e-27 91.9 64.2 4 10 3.3e-06 0.0037 18.0 1.5 1 23 299 321 299 322 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF837-202 - 531 6.5e-27 91.9 64.2 5 10 0.046 51 5.1 0.5 1 23 363 385 363 386 0.91 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF837-202 - 531 6.5e-27 91.9 64.2 6 10 2.9e-07 0.00032 21.3 0.5 1 23 391 413 391 414 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF837-202 - 531 6.5e-27 91.9 64.2 7 10 4.1e-06 0.0046 17.7 0.1 1 23 419 441 419 442 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF837-202 - 531 6.5e-27 91.9 64.2 8 10 5.4e-06 0.006 17.3 1.6 2 23 448 469 447 470 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF837-202 - 531 6.5e-27 91.9 64.2 9 10 1.5e-06 0.0017 19.0 1.4 1 23 475 497 475 498 0.97 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF837-202 - 531 6.5e-27 91.9 64.2 10 10 1.6e-05 0.018 15.8 0.2 1 23 503 525 503 526 0.96 C2H2-type zinc finger Zn-ribbon_8 PF09723.10 40 ZNF837-202 - 531 7.7e-08 32.3 59.3 1 8 5.5e-06 0.0062 16.6 4.7 8 36 227 256 223 259 0.82 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF837-202 - 531 7.7e-08 32.3 59.3 2 8 2.2e-05 0.025 14.7 3.1 6 38 271 310 270 312 0.91 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF837-202 - 531 7.7e-08 32.3 59.3 3 8 1.1 1.3e+03 -0.4 0.3 29 34 341 346 331 352 0.70 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF837-202 - 531 7.7e-08 32.3 59.3 4 8 6.2e-05 0.07 13.3 2.9 6 35 363 399 361 404 0.84 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF837-202 - 531 7.7e-08 32.3 59.3 5 8 7.2e-05 0.081 13.1 2.0 6 34 391 426 390 431 0.84 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF837-202 - 531 7.7e-08 32.3 59.3 6 8 0.0078 8.8 6.5 3.8 6 36 419 456 418 459 0.90 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF837-202 - 531 7.7e-08 32.3 59.3 7 8 0.0021 2.3 8.4 4.9 6 38 447 486 446 488 0.78 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF837-202 - 531 7.7e-08 32.3 59.3 8 8 0.011 12 6.1 0.1 6 20 503 517 502 524 0.81 Zinc ribbon domain zf-C2H2_jaz PF12171.8 27 ZNF837-202 - 531 3.9e-07 30.2 19.2 1 8 0.012 14 6.1 0.0 2 22 271 291 270 291 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF837-202 - 531 3.9e-07 30.2 19.2 2 8 0.62 6.9e+02 0.7 0.5 2 11 299 308 298 322 0.83 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF837-202 - 531 3.9e-07 30.2 19.2 3 8 0.91 1e+03 0.2 0.1 2 11 363 372 362 373 0.88 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF837-202 - 531 3.9e-07 30.2 19.2 4 8 0.0017 1.9 8.8 0.1 2 24 391 413 390 414 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF837-202 - 531 3.9e-07 30.2 19.2 5 8 0.00018 0.2 12.0 0.0 2 22 419 439 418 439 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF837-202 - 531 3.9e-07 30.2 19.2 6 8 0.017 19 5.7 0.1 4 22 449 467 447 467 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF837-202 - 531 3.9e-07 30.2 19.2 7 8 0.24 2.7e+02 2.0 0.1 2 24 475 497 474 497 0.90 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF837-202 - 531 3.9e-07 30.2 19.2 8 8 0.96 1.1e+03 0.1 0.0 2 22 503 523 502 523 0.88 Zinc-finger double-stranded RNA-binding # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF837-202.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF837-202.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF837-202.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF837-202.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF837-202.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:15:13 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZNF84-201 - 738 2.7e-148 476.4 119.5 1 20 7.2e-06 0.0081 16.5 0.1 9 25 198 217 194 218 0.84 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF84-201 - 738 2.7e-148 476.4 119.5 2 20 0.17 1.9e+02 2.7 0.1 2 24 222 244 221 246 0.83 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF84-201 - 738 2.7e-148 476.4 119.5 3 20 1.3e-09 1.4e-06 28.4 2.3 5 25 253 273 250 274 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF84-201 - 738 2.7e-148 476.4 119.5 4 20 1.3e-11 1.5e-08 34.7 0.4 2 25 278 301 277 302 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF84-201 - 738 2.7e-148 476.4 119.5 5 20 4.1e-07 0.00046 20.5 0.3 2 25 306 329 305 330 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF84-201 - 738 2.7e-148 476.4 119.5 6 20 1.8e-11 2e-08 34.3 0.2 1 25 333 357 333 358 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF84-201 - 738 2.7e-148 476.4 119.5 7 20 7.9e-07 0.00088 19.6 1.9 2 24 362 384 361 385 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF84-201 - 738 2.7e-148 476.4 119.5 8 20 5.3e-11 6e-08 32.8 0.5 2 24 390 412 389 413 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF84-201 - 738 2.7e-148 476.4 119.5 9 20 3.9e-09 4.4e-06 26.9 0.2 2 25 418 441 417 442 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF84-201 - 738 2.7e-148 476.4 119.5 10 20 1.8e-08 2e-05 24.8 0.8 1 25 445 469 445 470 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF84-201 - 738 2.7e-148 476.4 119.5 11 20 3e-13 3.4e-10 39.9 0.4 2 25 474 497 473 498 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF84-201 - 738 2.7e-148 476.4 119.5 12 20 4.1e-11 4.6e-08 33.1 0.2 1 24 501 524 501 524 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF84-201 - 738 2.7e-148 476.4 119.5 13 20 5.7e-12 6.4e-09 35.9 0.7 1 25 529 553 529 554 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF84-201 - 738 2.7e-148 476.4 119.5 14 20 7.3e-11 8.1e-08 32.4 0.4 2 25 558 581 557 582 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF84-201 - 738 2.7e-148 476.4 119.5 15 20 5.3e-12 6e-09 35.9 0.6 2 24 586 608 585 609 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF84-201 - 738 2.7e-148 476.4 119.5 16 20 5.2e-12 5.8e-09 36.0 0.8 2 24 614 636 613 637 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF84-201 - 738 2.7e-148 476.4 119.5 17 20 8.1e-12 9e-09 35.4 0.2 2 25 642 665 641 666 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF84-201 - 738 2.7e-148 476.4 119.5 18 20 4.6e-09 5.2e-06 26.6 1.3 5 25 673 693 669 694 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF84-201 - 738 2.7e-148 476.4 119.5 19 20 2.3e-11 2.5e-08 34.0 0.1 2 25 698 721 697 722 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF84-201 - 738 2.7e-148 476.4 119.5 20 20 0.065 73 4.1 0.3 2 13 726 737 725 738 0.86 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZNF84-201 - 738 1e-107 346.9 144.4 1 19 1.5e-06 0.0017 18.7 2.3 1 23 207 229 207 229 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF84-201 - 738 1e-107 346.9 144.4 2 19 2.7e-07 0.0003 21.1 2.1 3 23 237 257 235 257 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF84-201 - 738 1e-107 346.9 144.4 3 19 1.7e-09 1.9e-06 28.0 1.6 1 23 263 285 263 285 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF84-201 - 738 1e-107 346.9 144.4 4 19 5.4e-10 6.1e-07 29.6 1.0 1 23 291 313 291 313 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF84-201 - 738 1e-107 346.9 144.4 5 19 7.1e-08 7.9e-05 22.9 0.2 3 23 321 341 319 341 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF84-201 - 738 1e-107 346.9 144.4 6 19 7.9e-09 8.9e-06 25.9 2.7 1 23 347 369 347 369 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF84-201 - 738 1e-107 346.9 144.4 7 19 2.5e-05 0.028 14.9 0.5 3 23 377 397 375 397 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF84-201 - 738 1e-107 346.9 144.4 8 19 1.4e-07 0.00016 21.9 1.1 1 23 403 425 403 425 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF84-201 - 738 1e-107 346.9 144.4 9 19 9.2e-07 0.001 19.4 1.1 5 23 435 453 432 453 0.95 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF84-201 - 738 1e-107 346.9 144.4 10 19 5.9e-10 6.6e-07 29.4 1.5 1 23 459 481 459 481 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF84-201 - 738 1e-107 346.9 144.4 11 19 2.5e-07 0.00028 21.2 0.3 1 23 487 509 487 509 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF84-201 - 738 1e-107 346.9 144.4 12 19 3.9e-09 4.4e-06 26.9 3.9 1 23 515 537 515 537 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF84-201 - 738 1e-107 346.9 144.4 13 19 6.2e-08 6.9e-05 23.1 0.2 1 23 543 565 543 565 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF84-201 - 738 1e-107 346.9 144.4 14 19 7.2e-09 8.1e-06 26.0 0.8 1 23 571 593 571 593 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF84-201 - 738 1e-107 346.9 144.4 15 19 7.1e-07 0.0008 19.7 1.0 1 23 599 621 599 621 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF84-201 - 738 1e-107 346.9 144.4 16 19 1.1e-07 0.00013 22.3 0.6 1 23 627 649 627 649 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF84-201 - 738 1e-107 346.9 144.4 17 19 3e-08 3.4e-05 24.1 1.6 1 23 655 677 655 677 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF84-201 - 738 1e-107 346.9 144.4 18 19 1.8e-07 0.0002 21.6 0.6 3 23 685 705 683 705 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF84-201 - 738 1e-107 346.9 144.4 19 19 3.4e-08 3.8e-05 23.9 0.6 1 23 711 733 711 733 0.97 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZNF84-201 - 738 3.7e-66 214.0 141.3 1 19 2.2e-05 0.025 15.4 1.4 1 23 207 229 207 230 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF84-201 - 738 3.7e-66 214.0 141.3 2 19 0.00013 0.15 13.0 1.3 2 23 236 257 235 258 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF84-201 - 738 3.7e-66 214.0 141.3 3 19 1.6e-06 0.0018 19.0 1.3 1 23 263 285 263 286 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF84-201 - 738 3.7e-66 214.0 141.3 4 19 7e-07 0.00078 20.1 1.1 1 23 291 313 291 314 0.97 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF84-201 - 738 3.7e-66 214.0 141.3 5 19 3.5e-05 0.039 14.8 0.1 2 23 320 341 319 342 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF84-201 - 738 3.7e-66 214.0 141.3 6 19 5.3e-06 0.006 17.3 2.3 1 23 347 369 347 370 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF84-201 - 738 3.7e-66 214.0 141.3 7 19 0.00061 0.68 10.9 0.4 1 23 375 397 375 398 0.91 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF84-201 - 738 3.7e-66 214.0 141.3 8 19 1.1e-05 0.012 16.4 0.8 1 23 403 425 403 426 0.97 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF84-201 - 738 3.7e-66 214.0 141.3 9 19 0.0002 0.22 12.5 2.0 3 23 433 453 431 454 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF84-201 - 738 3.7e-66 214.0 141.3 10 19 5.6e-07 0.00063 20.4 1.4 1 23 459 481 459 482 0.97 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF84-201 - 738 3.7e-66 214.0 141.3 11 19 1e-05 0.012 16.4 0.4 1 23 487 509 487 510 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF84-201 - 738 3.7e-66 214.0 141.3 12 19 3e-05 0.034 15.0 3.8 1 23 515 537 515 538 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF84-201 - 738 3.7e-66 214.0 141.3 13 19 7.6e-06 0.0085 16.8 0.3 1 23 543 565 543 566 0.97 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF84-201 - 738 3.7e-66 214.0 141.3 14 19 1.7e-05 0.019 15.8 0.7 1 23 571 593 571 594 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF84-201 - 738 3.7e-66 214.0 141.3 15 19 1.8e-06 0.002 18.8 1.0 1 23 599 621 599 622 0.97 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF84-201 - 738 3.7e-66 214.0 141.3 16 19 3.1e-05 0.035 15.0 0.5 1 23 627 649 627 650 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF84-201 - 738 3.7e-66 214.0 141.3 17 19 1.2e-05 0.013 16.2 1.5 1 23 655 677 655 678 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF84-201 - 738 3.7e-66 214.0 141.3 18 19 4.9e-05 0.055 14.3 0.6 2 23 684 705 683 706 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF84-201 - 738 3.7e-66 214.0 141.3 19 19 2e-06 0.0023 18.6 0.5 1 23 711 733 711 734 0.96 C2H2-type zinc finger KRAB PF01352.27 42 ZNF84-201 - 738 8.7e-23 79.7 0.4 1 1 1.8e-25 2.1e-22 78.5 0.4 3 42 9 48 7 48 0.97 KRAB box zf-C2H2_jaz PF12171.8 27 ZNF84-201 - 738 1.2e-17 63.6 98.1 1 19 0.021 24 5.4 0.3 2 21 207 226 206 227 0.86 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF84-201 - 738 1.2e-17 63.6 98.1 2 19 0.39 4.4e+02 1.3 0.5 4 20 237 253 235 257 0.87 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF84-201 - 738 1.2e-17 63.6 98.1 3 19 0.0043 4.8 7.6 0.9 2 24 263 285 262 285 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF84-201 - 738 1.2e-17 63.6 98.1 4 19 0.0043 4.8 7.6 0.1 2 24 291 313 290 313 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF84-201 - 738 1.2e-17 63.6 98.1 5 19 0.046 51 4.3 0.1 4 22 321 339 319 339 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF84-201 - 738 1.2e-17 63.6 98.1 6 19 0.00091 1 9.7 0.2 2 20 347 365 346 369 0.91 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF84-201 - 738 1.2e-17 63.6 98.1 7 19 0.92 1e+03 0.2 0.1 4 21 377 394 374 395 0.87 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF84-201 - 738 1.2e-17 63.6 98.1 8 19 9.4e-05 0.11 12.9 0.2 2 24 403 425 402 431 0.88 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF84-201 - 738 1.2e-17 63.6 98.1 9 19 1.1 1.2e+03 -0.1 0.3 4 20 433 449 432 450 0.79 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF84-201 - 738 1.2e-17 63.6 98.1 10 19 0.0021 2.4 8.6 0.2 2 24 459 481 458 481 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF84-201 - 738 1.2e-17 63.6 98.1 11 19 0.0013 1.5 9.2 0.1 2 22 487 507 486 507 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF84-201 - 738 1.2e-17 63.6 98.1 12 19 3.5 4e+03 -1.7 1.5 2 14 515 527 514 537 0.66 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF84-201 - 738 1.2e-17 63.6 98.1 13 19 0.0016 1.8 8.9 0.1 2 24 543 565 542 565 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF84-201 - 738 1.2e-17 63.6 98.1 14 19 0.015 17 5.9 0.4 2 22 571 591 570 591 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF84-201 - 738 1.2e-17 63.6 98.1 15 19 0.00069 0.77 10.1 0.2 2 24 599 621 598 621 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF84-201 - 738 1.2e-17 63.6 98.1 16 19 0.0014 1.6 9.2 0.3 2 22 627 647 626 647 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF84-201 - 738 1.2e-17 63.6 98.1 17 19 0.021 23 5.4 0.2 2 23 655 676 654 677 0.84 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF84-201 - 738 1.2e-17 63.6 98.1 18 19 0.0031 3.4 8.0 0.3 4 22 685 703 683 703 0.95 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF84-201 - 738 1.2e-17 63.6 98.1 19 19 9.4e-05 0.1 12.9 0.5 2 24 711 733 710 737 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_6 PF13912.6 27 ZNF84-201 - 738 5.1e-13 48.7 140.3 1 19 1.1e-05 0.013 15.5 0.7 2 24 207 229 206 231 0.95 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF84-201 - 738 5.1e-13 48.7 140.3 2 19 0.18 2e+02 2.2 0.6 2 12 235 245 234 259 0.79 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF84-201 - 738 5.1e-13 48.7 140.3 3 19 0.00055 0.62 10.1 2.6 2 24 263 285 263 288 0.92 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF84-201 - 738 5.1e-13 48.7 140.3 4 19 0.0023 2.6 8.1 1.4 2 24 291 313 291 316 0.90 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF84-201 - 738 5.1e-13 48.7 140.3 5 19 0.012 13 5.9 0.2 2 20 319 337 319 343 0.79 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF84-201 - 738 5.1e-13 48.7 140.3 6 19 0.0021 2.4 8.3 2.5 2 24 347 369 347 371 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF84-201 - 738 5.1e-13 48.7 140.3 7 19 6.4 7.2e+03 -2.8 0.5 2 11 375 384 375 384 0.88 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF84-201 - 738 5.1e-13 48.7 140.3 8 19 0.00015 0.17 11.9 0.6 2 24 403 425 403 428 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF84-201 - 738 5.1e-13 48.7 140.3 9 19 0.23 2.6e+02 1.8 1.0 2 12 431 441 431 454 0.79 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF84-201 - 738 5.1e-13 48.7 140.3 10 19 0.0029 3.3 7.8 1.0 2 24 459 481 459 484 0.81 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF84-201 - 738 5.1e-13 48.7 140.3 11 19 0.00042 0.47 10.5 0.5 2 12 487 497 487 509 0.84 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF84-201 - 738 5.1e-13 48.7 140.3 12 19 0.017 19 5.4 3.4 2 24 515 537 515 540 0.76 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF84-201 - 738 5.1e-13 48.7 140.3 13 19 3.2e-05 0.035 14.1 1.2 2 24 543 565 543 568 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF84-201 - 738 5.1e-13 48.7 140.3 14 19 0.22 2.4e+02 1.9 0.6 2 22 571 591 571 595 0.83 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF84-201 - 738 5.1e-13 48.7 140.3 15 19 0.0096 11 6.2 0.7 2 24 599 621 599 624 0.90 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF84-201 - 738 5.1e-13 48.7 140.3 16 19 0.0036 4.1 7.5 0.3 2 21 627 646 627 651 0.81 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF84-201 - 738 5.1e-13 48.7 140.3 17 19 0.00016 0.18 11.8 1.3 2 24 655 677 655 680 0.87 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF84-201 - 738 5.1e-13 48.7 140.3 18 19 0.056 63 3.7 0.5 2 12 683 693 683 694 0.90 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF84-201 - 738 5.1e-13 48.7 140.3 19 19 0.011 12 6.0 0.7 2 24 711 733 711 734 0.87 C2H2-type zinc finger zinc_ribbon_15 PF17032.5 86 ZNF84-201 - 738 1.9e-10 41.3 80.0 1 15 0.066 73 4.2 0.7 19 77 159 218 155 221 0.63 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF84-201 - 738 1.9e-10 41.3 80.0 2 15 0.0014 1.5 9.6 2.2 34 81 203 250 178 253 0.80 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF84-201 - 738 1.9e-10 41.3 80.0 3 15 0.00016 0.18 12.6 2.6 25 77 250 302 247 305 0.89 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF84-201 - 738 1.9e-10 41.3 80.0 4 15 0.00032 0.35 11.6 0.8 26 78 307 359 303 365 0.88 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF84-201 - 738 1.9e-10 41.3 80.0 5 15 0.0034 3.8 8.3 0.8 30 75 339 384 332 391 0.86 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF84-201 - 738 1.9e-10 41.3 80.0 6 15 0.016 18 6.2 4.4 31 77 396 442 362 448 0.68 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF84-201 - 738 1.9e-10 41.3 80.0 7 15 0.0073 8.2 7.3 1.3 33 78 426 471 416 479 0.84 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF84-201 - 738 1.9e-10 41.3 80.0 8 15 0.00018 0.2 12.4 1.6 35 78 456 499 444 505 0.86 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF84-201 - 738 1.9e-10 41.3 80.0 9 15 0.0048 5.4 7.8 2.9 33 78 482 527 474 530 0.84 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF84-201 - 738 1.9e-10 41.3 80.0 10 15 0.0041 4.6 8.1 3.5 33 77 510 554 504 562 0.84 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF84-201 - 738 1.9e-10 41.3 80.0 11 15 0.00047 0.53 11.1 2.9 32 79 537 584 529 589 0.86 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF84-201 - 738 1.9e-10 41.3 80.0 12 15 0.023 25 5.7 3.1 35 75 568 608 560 613 0.83 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF84-201 - 738 1.9e-10 41.3 80.0 13 15 0.0032 3.6 8.4 1.9 32 78 593 639 588 645 0.87 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF84-201 - 738 1.9e-10 41.3 80.0 14 15 0.0024 2.7 8.8 1.3 29 78 618 667 614 673 0.84 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF84-201 - 738 1.9e-10 41.3 80.0 15 15 0.0004 0.45 11.3 1.6 26 79 671 724 667 727 0.88 zinc-ribbon family # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF84-201.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF84-201.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF84-201.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF84-201.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF84-201.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:15:14 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZNF84-202 - 738 2.7e-148 476.4 119.5 1 20 7.2e-06 0.0081 16.5 0.1 9 25 198 217 194 218 0.84 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF84-202 - 738 2.7e-148 476.4 119.5 2 20 0.17 1.9e+02 2.7 0.1 2 24 222 244 221 246 0.83 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF84-202 - 738 2.7e-148 476.4 119.5 3 20 1.3e-09 1.4e-06 28.4 2.3 5 25 253 273 250 274 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF84-202 - 738 2.7e-148 476.4 119.5 4 20 1.3e-11 1.5e-08 34.7 0.4 2 25 278 301 277 302 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF84-202 - 738 2.7e-148 476.4 119.5 5 20 4.1e-07 0.00046 20.5 0.3 2 25 306 329 305 330 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF84-202 - 738 2.7e-148 476.4 119.5 6 20 1.8e-11 2e-08 34.3 0.2 1 25 333 357 333 358 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF84-202 - 738 2.7e-148 476.4 119.5 7 20 7.9e-07 0.00088 19.6 1.9 2 24 362 384 361 385 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF84-202 - 738 2.7e-148 476.4 119.5 8 20 5.3e-11 6e-08 32.8 0.5 2 24 390 412 389 413 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF84-202 - 738 2.7e-148 476.4 119.5 9 20 3.9e-09 4.4e-06 26.9 0.2 2 25 418 441 417 442 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF84-202 - 738 2.7e-148 476.4 119.5 10 20 1.8e-08 2e-05 24.8 0.8 1 25 445 469 445 470 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF84-202 - 738 2.7e-148 476.4 119.5 11 20 3e-13 3.4e-10 39.9 0.4 2 25 474 497 473 498 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF84-202 - 738 2.7e-148 476.4 119.5 12 20 4.1e-11 4.6e-08 33.1 0.2 1 24 501 524 501 524 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF84-202 - 738 2.7e-148 476.4 119.5 13 20 5.7e-12 6.4e-09 35.9 0.7 1 25 529 553 529 554 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF84-202 - 738 2.7e-148 476.4 119.5 14 20 7.3e-11 8.1e-08 32.4 0.4 2 25 558 581 557 582 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF84-202 - 738 2.7e-148 476.4 119.5 15 20 5.3e-12 6e-09 35.9 0.6 2 24 586 608 585 609 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF84-202 - 738 2.7e-148 476.4 119.5 16 20 5.2e-12 5.8e-09 36.0 0.8 2 24 614 636 613 637 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF84-202 - 738 2.7e-148 476.4 119.5 17 20 8.1e-12 9e-09 35.4 0.2 2 25 642 665 641 666 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF84-202 - 738 2.7e-148 476.4 119.5 18 20 4.6e-09 5.2e-06 26.6 1.3 5 25 673 693 669 694 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF84-202 - 738 2.7e-148 476.4 119.5 19 20 2.3e-11 2.5e-08 34.0 0.1 2 25 698 721 697 722 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF84-202 - 738 2.7e-148 476.4 119.5 20 20 0.065 73 4.1 0.3 2 13 726 737 725 738 0.86 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZNF84-202 - 738 1e-107 346.9 144.4 1 19 1.5e-06 0.0017 18.7 2.3 1 23 207 229 207 229 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF84-202 - 738 1e-107 346.9 144.4 2 19 2.7e-07 0.0003 21.1 2.1 3 23 237 257 235 257 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF84-202 - 738 1e-107 346.9 144.4 3 19 1.7e-09 1.9e-06 28.0 1.6 1 23 263 285 263 285 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF84-202 - 738 1e-107 346.9 144.4 4 19 5.4e-10 6.1e-07 29.6 1.0 1 23 291 313 291 313 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF84-202 - 738 1e-107 346.9 144.4 5 19 7.1e-08 7.9e-05 22.9 0.2 3 23 321 341 319 341 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF84-202 - 738 1e-107 346.9 144.4 6 19 7.9e-09 8.9e-06 25.9 2.7 1 23 347 369 347 369 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF84-202 - 738 1e-107 346.9 144.4 7 19 2.5e-05 0.028 14.9 0.5 3 23 377 397 375 397 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF84-202 - 738 1e-107 346.9 144.4 8 19 1.4e-07 0.00016 21.9 1.1 1 23 403 425 403 425 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF84-202 - 738 1e-107 346.9 144.4 9 19 9.2e-07 0.001 19.4 1.1 5 23 435 453 432 453 0.95 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF84-202 - 738 1e-107 346.9 144.4 10 19 5.9e-10 6.6e-07 29.4 1.5 1 23 459 481 459 481 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF84-202 - 738 1e-107 346.9 144.4 11 19 2.5e-07 0.00028 21.2 0.3 1 23 487 509 487 509 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF84-202 - 738 1e-107 346.9 144.4 12 19 3.9e-09 4.4e-06 26.9 3.9 1 23 515 537 515 537 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF84-202 - 738 1e-107 346.9 144.4 13 19 6.2e-08 6.9e-05 23.1 0.2 1 23 543 565 543 565 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF84-202 - 738 1e-107 346.9 144.4 14 19 7.2e-09 8.1e-06 26.0 0.8 1 23 571 593 571 593 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF84-202 - 738 1e-107 346.9 144.4 15 19 7.1e-07 0.0008 19.7 1.0 1 23 599 621 599 621 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF84-202 - 738 1e-107 346.9 144.4 16 19 1.1e-07 0.00013 22.3 0.6 1 23 627 649 627 649 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF84-202 - 738 1e-107 346.9 144.4 17 19 3e-08 3.4e-05 24.1 1.6 1 23 655 677 655 677 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF84-202 - 738 1e-107 346.9 144.4 18 19 1.8e-07 0.0002 21.6 0.6 3 23 685 705 683 705 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF84-202 - 738 1e-107 346.9 144.4 19 19 3.4e-08 3.8e-05 23.9 0.6 1 23 711 733 711 733 0.97 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZNF84-202 - 738 3.7e-66 214.0 141.3 1 19 2.2e-05 0.025 15.4 1.4 1 23 207 229 207 230 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF84-202 - 738 3.7e-66 214.0 141.3 2 19 0.00013 0.15 13.0 1.3 2 23 236 257 235 258 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF84-202 - 738 3.7e-66 214.0 141.3 3 19 1.6e-06 0.0018 19.0 1.3 1 23 263 285 263 286 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF84-202 - 738 3.7e-66 214.0 141.3 4 19 7e-07 0.00078 20.1 1.1 1 23 291 313 291 314 0.97 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF84-202 - 738 3.7e-66 214.0 141.3 5 19 3.5e-05 0.039 14.8 0.1 2 23 320 341 319 342 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF84-202 - 738 3.7e-66 214.0 141.3 6 19 5.3e-06 0.006 17.3 2.3 1 23 347 369 347 370 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF84-202 - 738 3.7e-66 214.0 141.3 7 19 0.00061 0.68 10.9 0.4 1 23 375 397 375 398 0.91 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF84-202 - 738 3.7e-66 214.0 141.3 8 19 1.1e-05 0.012 16.4 0.8 1 23 403 425 403 426 0.97 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF84-202 - 738 3.7e-66 214.0 141.3 9 19 0.0002 0.22 12.5 2.0 3 23 433 453 431 454 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF84-202 - 738 3.7e-66 214.0 141.3 10 19 5.6e-07 0.00063 20.4 1.4 1 23 459 481 459 482 0.97 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF84-202 - 738 3.7e-66 214.0 141.3 11 19 1e-05 0.012 16.4 0.4 1 23 487 509 487 510 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF84-202 - 738 3.7e-66 214.0 141.3 12 19 3e-05 0.034 15.0 3.8 1 23 515 537 515 538 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF84-202 - 738 3.7e-66 214.0 141.3 13 19 7.6e-06 0.0085 16.8 0.3 1 23 543 565 543 566 0.97 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF84-202 - 738 3.7e-66 214.0 141.3 14 19 1.7e-05 0.019 15.8 0.7 1 23 571 593 571 594 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF84-202 - 738 3.7e-66 214.0 141.3 15 19 1.8e-06 0.002 18.8 1.0 1 23 599 621 599 622 0.97 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF84-202 - 738 3.7e-66 214.0 141.3 16 19 3.1e-05 0.035 15.0 0.5 1 23 627 649 627 650 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF84-202 - 738 3.7e-66 214.0 141.3 17 19 1.2e-05 0.013 16.2 1.5 1 23 655 677 655 678 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF84-202 - 738 3.7e-66 214.0 141.3 18 19 4.9e-05 0.055 14.3 0.6 2 23 684 705 683 706 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF84-202 - 738 3.7e-66 214.0 141.3 19 19 2e-06 0.0023 18.6 0.5 1 23 711 733 711 734 0.96 C2H2-type zinc finger KRAB PF01352.27 42 ZNF84-202 - 738 8.7e-23 79.7 0.4 1 1 1.8e-25 2.1e-22 78.5 0.4 3 42 9 48 7 48 0.97 KRAB box zf-C2H2_jaz PF12171.8 27 ZNF84-202 - 738 1.2e-17 63.6 98.1 1 19 0.021 24 5.4 0.3 2 21 207 226 206 227 0.86 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF84-202 - 738 1.2e-17 63.6 98.1 2 19 0.39 4.4e+02 1.3 0.5 4 20 237 253 235 257 0.87 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF84-202 - 738 1.2e-17 63.6 98.1 3 19 0.0043 4.8 7.6 0.9 2 24 263 285 262 285 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF84-202 - 738 1.2e-17 63.6 98.1 4 19 0.0043 4.8 7.6 0.1 2 24 291 313 290 313 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF84-202 - 738 1.2e-17 63.6 98.1 5 19 0.046 51 4.3 0.1 4 22 321 339 319 339 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF84-202 - 738 1.2e-17 63.6 98.1 6 19 0.00091 1 9.7 0.2 2 20 347 365 346 369 0.91 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF84-202 - 738 1.2e-17 63.6 98.1 7 19 0.92 1e+03 0.2 0.1 4 21 377 394 374 395 0.87 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF84-202 - 738 1.2e-17 63.6 98.1 8 19 9.4e-05 0.11 12.9 0.2 2 24 403 425 402 431 0.88 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF84-202 - 738 1.2e-17 63.6 98.1 9 19 1.1 1.2e+03 -0.1 0.3 4 20 433 449 432 450 0.79 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF84-202 - 738 1.2e-17 63.6 98.1 10 19 0.0021 2.4 8.6 0.2 2 24 459 481 458 481 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF84-202 - 738 1.2e-17 63.6 98.1 11 19 0.0013 1.5 9.2 0.1 2 22 487 507 486 507 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF84-202 - 738 1.2e-17 63.6 98.1 12 19 3.5 4e+03 -1.7 1.5 2 14 515 527 514 537 0.66 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF84-202 - 738 1.2e-17 63.6 98.1 13 19 0.0016 1.8 8.9 0.1 2 24 543 565 542 565 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF84-202 - 738 1.2e-17 63.6 98.1 14 19 0.015 17 5.9 0.4 2 22 571 591 570 591 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF84-202 - 738 1.2e-17 63.6 98.1 15 19 0.00069 0.77 10.1 0.2 2 24 599 621 598 621 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF84-202 - 738 1.2e-17 63.6 98.1 16 19 0.0014 1.6 9.2 0.3 2 22 627 647 626 647 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF84-202 - 738 1.2e-17 63.6 98.1 17 19 0.021 23 5.4 0.2 2 23 655 676 654 677 0.84 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF84-202 - 738 1.2e-17 63.6 98.1 18 19 0.0031 3.4 8.0 0.3 4 22 685 703 683 703 0.95 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF84-202 - 738 1.2e-17 63.6 98.1 19 19 9.4e-05 0.1 12.9 0.5 2 24 711 733 710 737 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_6 PF13912.6 27 ZNF84-202 - 738 5.1e-13 48.7 140.3 1 19 1.1e-05 0.013 15.5 0.7 2 24 207 229 206 231 0.95 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF84-202 - 738 5.1e-13 48.7 140.3 2 19 0.18 2e+02 2.2 0.6 2 12 235 245 234 259 0.79 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF84-202 - 738 5.1e-13 48.7 140.3 3 19 0.00055 0.62 10.1 2.6 2 24 263 285 263 288 0.92 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF84-202 - 738 5.1e-13 48.7 140.3 4 19 0.0023 2.6 8.1 1.4 2 24 291 313 291 316 0.90 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF84-202 - 738 5.1e-13 48.7 140.3 5 19 0.012 13 5.9 0.2 2 20 319 337 319 343 0.79 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF84-202 - 738 5.1e-13 48.7 140.3 6 19 0.0021 2.4 8.3 2.5 2 24 347 369 347 371 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF84-202 - 738 5.1e-13 48.7 140.3 7 19 6.4 7.2e+03 -2.8 0.5 2 11 375 384 375 384 0.88 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF84-202 - 738 5.1e-13 48.7 140.3 8 19 0.00015 0.17 11.9 0.6 2 24 403 425 403 428 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF84-202 - 738 5.1e-13 48.7 140.3 9 19 0.23 2.6e+02 1.8 1.0 2 12 431 441 431 454 0.79 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF84-202 - 738 5.1e-13 48.7 140.3 10 19 0.0029 3.3 7.8 1.0 2 24 459 481 459 484 0.81 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF84-202 - 738 5.1e-13 48.7 140.3 11 19 0.00042 0.47 10.5 0.5 2 12 487 497 487 509 0.84 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF84-202 - 738 5.1e-13 48.7 140.3 12 19 0.017 19 5.4 3.4 2 24 515 537 515 540 0.76 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF84-202 - 738 5.1e-13 48.7 140.3 13 19 3.2e-05 0.035 14.1 1.2 2 24 543 565 543 568 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF84-202 - 738 5.1e-13 48.7 140.3 14 19 0.22 2.4e+02 1.9 0.6 2 22 571 591 571 595 0.83 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF84-202 - 738 5.1e-13 48.7 140.3 15 19 0.0096 11 6.2 0.7 2 24 599 621 599 624 0.90 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF84-202 - 738 5.1e-13 48.7 140.3 16 19 0.0036 4.1 7.5 0.3 2 21 627 646 627 651 0.81 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF84-202 - 738 5.1e-13 48.7 140.3 17 19 0.00016 0.18 11.8 1.3 2 24 655 677 655 680 0.87 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF84-202 - 738 5.1e-13 48.7 140.3 18 19 0.056 63 3.7 0.5 2 12 683 693 683 694 0.90 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF84-202 - 738 5.1e-13 48.7 140.3 19 19 0.011 12 6.0 0.7 2 24 711 733 711 734 0.87 C2H2-type zinc finger zinc_ribbon_15 PF17032.5 86 ZNF84-202 - 738 1.9e-10 41.3 80.0 1 15 0.066 73 4.2 0.7 19 77 159 218 155 221 0.63 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF84-202 - 738 1.9e-10 41.3 80.0 2 15 0.0014 1.5 9.6 2.2 34 81 203 250 178 253 0.80 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF84-202 - 738 1.9e-10 41.3 80.0 3 15 0.00016 0.18 12.6 2.6 25 77 250 302 247 305 0.89 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF84-202 - 738 1.9e-10 41.3 80.0 4 15 0.00032 0.35 11.6 0.8 26 78 307 359 303 365 0.88 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF84-202 - 738 1.9e-10 41.3 80.0 5 15 0.0034 3.8 8.3 0.8 30 75 339 384 332 391 0.86 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF84-202 - 738 1.9e-10 41.3 80.0 6 15 0.016 18 6.2 4.4 31 77 396 442 362 448 0.68 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF84-202 - 738 1.9e-10 41.3 80.0 7 15 0.0073 8.2 7.3 1.3 33 78 426 471 416 479 0.84 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF84-202 - 738 1.9e-10 41.3 80.0 8 15 0.00018 0.2 12.4 1.6 35 78 456 499 444 505 0.86 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF84-202 - 738 1.9e-10 41.3 80.0 9 15 0.0048 5.4 7.8 2.9 33 78 482 527 474 530 0.84 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF84-202 - 738 1.9e-10 41.3 80.0 10 15 0.0041 4.6 8.1 3.5 33 77 510 554 504 562 0.84 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF84-202 - 738 1.9e-10 41.3 80.0 11 15 0.00047 0.53 11.1 2.9 32 79 537 584 529 589 0.86 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF84-202 - 738 1.9e-10 41.3 80.0 12 15 0.023 25 5.7 3.1 35 75 568 608 560 613 0.83 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF84-202 - 738 1.9e-10 41.3 80.0 13 15 0.0032 3.6 8.4 1.9 32 78 593 639 588 645 0.87 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF84-202 - 738 1.9e-10 41.3 80.0 14 15 0.0024 2.7 8.8 1.3 29 78 618 667 614 673 0.84 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF84-202 - 738 1.9e-10 41.3 80.0 15 15 0.0004 0.45 11.3 1.6 26 79 671 724 667 727 0.88 zinc-ribbon family # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF84-202.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF84-202.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF84-202.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF84-202.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF84-202.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:15:14 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF84-203.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF84-203.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF84-203.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF84-203.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF84-203.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:15:15 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF84-204.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF84-204.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF84-204.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF84-204.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF84-204.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:15:15 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- KRAB PF01352.27 42 ZNF84-205 - 145 1.2e-23 82.4 0.4 1 1 1e-27 1.9e-23 81.8 0.4 3 42 9 48 7 48 0.97 KRAB box # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF84-205.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF84-205.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF84-205.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF84-205.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF84-205.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:15:15 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF84-206.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF84-206.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF84-206.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF84-206.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF84-206.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:15:16 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- KRAB PF01352.27 42 ZNF84-207 - 97 6e-24 83.4 0.4 1 1 4.5e-28 8.1e-24 83.0 0.4 3 42 9 48 7 48 0.97 KRAB box # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF84-207.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF84-207.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF84-207.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF84-207.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF84-207.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:15:16 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZNF84-208 - 738 2.7e-148 476.4 119.5 1 20 7.2e-06 0.0081 16.5 0.1 9 25 198 217 194 218 0.84 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF84-208 - 738 2.7e-148 476.4 119.5 2 20 0.17 1.9e+02 2.7 0.1 2 24 222 244 221 246 0.83 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF84-208 - 738 2.7e-148 476.4 119.5 3 20 1.3e-09 1.4e-06 28.4 2.3 5 25 253 273 250 274 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF84-208 - 738 2.7e-148 476.4 119.5 4 20 1.3e-11 1.5e-08 34.7 0.4 2 25 278 301 277 302 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF84-208 - 738 2.7e-148 476.4 119.5 5 20 4.1e-07 0.00046 20.5 0.3 2 25 306 329 305 330 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF84-208 - 738 2.7e-148 476.4 119.5 6 20 1.8e-11 2e-08 34.3 0.2 1 25 333 357 333 358 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF84-208 - 738 2.7e-148 476.4 119.5 7 20 7.9e-07 0.00088 19.6 1.9 2 24 362 384 361 385 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF84-208 - 738 2.7e-148 476.4 119.5 8 20 5.3e-11 6e-08 32.8 0.5 2 24 390 412 389 413 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF84-208 - 738 2.7e-148 476.4 119.5 9 20 3.9e-09 4.4e-06 26.9 0.2 2 25 418 441 417 442 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF84-208 - 738 2.7e-148 476.4 119.5 10 20 1.8e-08 2e-05 24.8 0.8 1 25 445 469 445 470 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF84-208 - 738 2.7e-148 476.4 119.5 11 20 3e-13 3.4e-10 39.9 0.4 2 25 474 497 473 498 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF84-208 - 738 2.7e-148 476.4 119.5 12 20 4.1e-11 4.6e-08 33.1 0.2 1 24 501 524 501 524 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF84-208 - 738 2.7e-148 476.4 119.5 13 20 5.7e-12 6.4e-09 35.9 0.7 1 25 529 553 529 554 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF84-208 - 738 2.7e-148 476.4 119.5 14 20 7.3e-11 8.1e-08 32.4 0.4 2 25 558 581 557 582 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF84-208 - 738 2.7e-148 476.4 119.5 15 20 5.3e-12 6e-09 35.9 0.6 2 24 586 608 585 609 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF84-208 - 738 2.7e-148 476.4 119.5 16 20 5.2e-12 5.8e-09 36.0 0.8 2 24 614 636 613 637 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF84-208 - 738 2.7e-148 476.4 119.5 17 20 8.1e-12 9e-09 35.4 0.2 2 25 642 665 641 666 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF84-208 - 738 2.7e-148 476.4 119.5 18 20 4.6e-09 5.2e-06 26.6 1.3 5 25 673 693 669 694 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF84-208 - 738 2.7e-148 476.4 119.5 19 20 2.3e-11 2.5e-08 34.0 0.1 2 25 698 721 697 722 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF84-208 - 738 2.7e-148 476.4 119.5 20 20 0.065 73 4.1 0.3 2 13 726 737 725 738 0.86 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZNF84-208 - 738 1e-107 346.9 144.4 1 19 1.5e-06 0.0017 18.7 2.3 1 23 207 229 207 229 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF84-208 - 738 1e-107 346.9 144.4 2 19 2.7e-07 0.0003 21.1 2.1 3 23 237 257 235 257 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF84-208 - 738 1e-107 346.9 144.4 3 19 1.7e-09 1.9e-06 28.0 1.6 1 23 263 285 263 285 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF84-208 - 738 1e-107 346.9 144.4 4 19 5.4e-10 6.1e-07 29.6 1.0 1 23 291 313 291 313 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF84-208 - 738 1e-107 346.9 144.4 5 19 7.1e-08 7.9e-05 22.9 0.2 3 23 321 341 319 341 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF84-208 - 738 1e-107 346.9 144.4 6 19 7.9e-09 8.9e-06 25.9 2.7 1 23 347 369 347 369 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF84-208 - 738 1e-107 346.9 144.4 7 19 2.5e-05 0.028 14.9 0.5 3 23 377 397 375 397 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF84-208 - 738 1e-107 346.9 144.4 8 19 1.4e-07 0.00016 21.9 1.1 1 23 403 425 403 425 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF84-208 - 738 1e-107 346.9 144.4 9 19 9.2e-07 0.001 19.4 1.1 5 23 435 453 432 453 0.95 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF84-208 - 738 1e-107 346.9 144.4 10 19 5.9e-10 6.6e-07 29.4 1.5 1 23 459 481 459 481 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF84-208 - 738 1e-107 346.9 144.4 11 19 2.5e-07 0.00028 21.2 0.3 1 23 487 509 487 509 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF84-208 - 738 1e-107 346.9 144.4 12 19 3.9e-09 4.4e-06 26.9 3.9 1 23 515 537 515 537 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF84-208 - 738 1e-107 346.9 144.4 13 19 6.2e-08 6.9e-05 23.1 0.2 1 23 543 565 543 565 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF84-208 - 738 1e-107 346.9 144.4 14 19 7.2e-09 8.1e-06 26.0 0.8 1 23 571 593 571 593 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF84-208 - 738 1e-107 346.9 144.4 15 19 7.1e-07 0.0008 19.7 1.0 1 23 599 621 599 621 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF84-208 - 738 1e-107 346.9 144.4 16 19 1.1e-07 0.00013 22.3 0.6 1 23 627 649 627 649 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF84-208 - 738 1e-107 346.9 144.4 17 19 3e-08 3.4e-05 24.1 1.6 1 23 655 677 655 677 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF84-208 - 738 1e-107 346.9 144.4 18 19 1.8e-07 0.0002 21.6 0.6 3 23 685 705 683 705 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF84-208 - 738 1e-107 346.9 144.4 19 19 3.4e-08 3.8e-05 23.9 0.6 1 23 711 733 711 733 0.97 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZNF84-208 - 738 3.7e-66 214.0 141.3 1 19 2.2e-05 0.025 15.4 1.4 1 23 207 229 207 230 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF84-208 - 738 3.7e-66 214.0 141.3 2 19 0.00013 0.15 13.0 1.3 2 23 236 257 235 258 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF84-208 - 738 3.7e-66 214.0 141.3 3 19 1.6e-06 0.0018 19.0 1.3 1 23 263 285 263 286 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF84-208 - 738 3.7e-66 214.0 141.3 4 19 7e-07 0.00078 20.1 1.1 1 23 291 313 291 314 0.97 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF84-208 - 738 3.7e-66 214.0 141.3 5 19 3.5e-05 0.039 14.8 0.1 2 23 320 341 319 342 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF84-208 - 738 3.7e-66 214.0 141.3 6 19 5.3e-06 0.006 17.3 2.3 1 23 347 369 347 370 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF84-208 - 738 3.7e-66 214.0 141.3 7 19 0.00061 0.68 10.9 0.4 1 23 375 397 375 398 0.91 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF84-208 - 738 3.7e-66 214.0 141.3 8 19 1.1e-05 0.012 16.4 0.8 1 23 403 425 403 426 0.97 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF84-208 - 738 3.7e-66 214.0 141.3 9 19 0.0002 0.22 12.5 2.0 3 23 433 453 431 454 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF84-208 - 738 3.7e-66 214.0 141.3 10 19 5.6e-07 0.00063 20.4 1.4 1 23 459 481 459 482 0.97 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF84-208 - 738 3.7e-66 214.0 141.3 11 19 1e-05 0.012 16.4 0.4 1 23 487 509 487 510 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF84-208 - 738 3.7e-66 214.0 141.3 12 19 3e-05 0.034 15.0 3.8 1 23 515 537 515 538 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF84-208 - 738 3.7e-66 214.0 141.3 13 19 7.6e-06 0.0085 16.8 0.3 1 23 543 565 543 566 0.97 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF84-208 - 738 3.7e-66 214.0 141.3 14 19 1.7e-05 0.019 15.8 0.7 1 23 571 593 571 594 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF84-208 - 738 3.7e-66 214.0 141.3 15 19 1.8e-06 0.002 18.8 1.0 1 23 599 621 599 622 0.97 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF84-208 - 738 3.7e-66 214.0 141.3 16 19 3.1e-05 0.035 15.0 0.5 1 23 627 649 627 650 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF84-208 - 738 3.7e-66 214.0 141.3 17 19 1.2e-05 0.013 16.2 1.5 1 23 655 677 655 678 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF84-208 - 738 3.7e-66 214.0 141.3 18 19 4.9e-05 0.055 14.3 0.6 2 23 684 705 683 706 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF84-208 - 738 3.7e-66 214.0 141.3 19 19 2e-06 0.0023 18.6 0.5 1 23 711 733 711 734 0.96 C2H2-type zinc finger KRAB PF01352.27 42 ZNF84-208 - 738 8.7e-23 79.7 0.4 1 1 1.8e-25 2.1e-22 78.5 0.4 3 42 9 48 7 48 0.97 KRAB box zf-C2H2_jaz PF12171.8 27 ZNF84-208 - 738 1.2e-17 63.6 98.1 1 19 0.021 24 5.4 0.3 2 21 207 226 206 227 0.86 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF84-208 - 738 1.2e-17 63.6 98.1 2 19 0.39 4.4e+02 1.3 0.5 4 20 237 253 235 257 0.87 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF84-208 - 738 1.2e-17 63.6 98.1 3 19 0.0043 4.8 7.6 0.9 2 24 263 285 262 285 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF84-208 - 738 1.2e-17 63.6 98.1 4 19 0.0043 4.8 7.6 0.1 2 24 291 313 290 313 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF84-208 - 738 1.2e-17 63.6 98.1 5 19 0.046 51 4.3 0.1 4 22 321 339 319 339 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF84-208 - 738 1.2e-17 63.6 98.1 6 19 0.00091 1 9.7 0.2 2 20 347 365 346 369 0.91 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF84-208 - 738 1.2e-17 63.6 98.1 7 19 0.92 1e+03 0.2 0.1 4 21 377 394 374 395 0.87 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF84-208 - 738 1.2e-17 63.6 98.1 8 19 9.4e-05 0.11 12.9 0.2 2 24 403 425 402 431 0.88 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF84-208 - 738 1.2e-17 63.6 98.1 9 19 1.1 1.2e+03 -0.1 0.3 4 20 433 449 432 450 0.79 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF84-208 - 738 1.2e-17 63.6 98.1 10 19 0.0021 2.4 8.6 0.2 2 24 459 481 458 481 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF84-208 - 738 1.2e-17 63.6 98.1 11 19 0.0013 1.5 9.2 0.1 2 22 487 507 486 507 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF84-208 - 738 1.2e-17 63.6 98.1 12 19 3.5 4e+03 -1.7 1.5 2 14 515 527 514 537 0.66 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF84-208 - 738 1.2e-17 63.6 98.1 13 19 0.0016 1.8 8.9 0.1 2 24 543 565 542 565 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF84-208 - 738 1.2e-17 63.6 98.1 14 19 0.015 17 5.9 0.4 2 22 571 591 570 591 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF84-208 - 738 1.2e-17 63.6 98.1 15 19 0.00069 0.77 10.1 0.2 2 24 599 621 598 621 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF84-208 - 738 1.2e-17 63.6 98.1 16 19 0.0014 1.6 9.2 0.3 2 22 627 647 626 647 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF84-208 - 738 1.2e-17 63.6 98.1 17 19 0.021 23 5.4 0.2 2 23 655 676 654 677 0.84 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF84-208 - 738 1.2e-17 63.6 98.1 18 19 0.0031 3.4 8.0 0.3 4 22 685 703 683 703 0.95 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF84-208 - 738 1.2e-17 63.6 98.1 19 19 9.4e-05 0.1 12.9 0.5 2 24 711 733 710 737 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_6 PF13912.6 27 ZNF84-208 - 738 5.1e-13 48.7 140.3 1 19 1.1e-05 0.013 15.5 0.7 2 24 207 229 206 231 0.95 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF84-208 - 738 5.1e-13 48.7 140.3 2 19 0.18 2e+02 2.2 0.6 2 12 235 245 234 259 0.79 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF84-208 - 738 5.1e-13 48.7 140.3 3 19 0.00055 0.62 10.1 2.6 2 24 263 285 263 288 0.92 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF84-208 - 738 5.1e-13 48.7 140.3 4 19 0.0023 2.6 8.1 1.4 2 24 291 313 291 316 0.90 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF84-208 - 738 5.1e-13 48.7 140.3 5 19 0.012 13 5.9 0.2 2 20 319 337 319 343 0.79 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF84-208 - 738 5.1e-13 48.7 140.3 6 19 0.0021 2.4 8.3 2.5 2 24 347 369 347 371 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF84-208 - 738 5.1e-13 48.7 140.3 7 19 6.4 7.2e+03 -2.8 0.5 2 11 375 384 375 384 0.88 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF84-208 - 738 5.1e-13 48.7 140.3 8 19 0.00015 0.17 11.9 0.6 2 24 403 425 403 428 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF84-208 - 738 5.1e-13 48.7 140.3 9 19 0.23 2.6e+02 1.8 1.0 2 12 431 441 431 454 0.79 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF84-208 - 738 5.1e-13 48.7 140.3 10 19 0.0029 3.3 7.8 1.0 2 24 459 481 459 484 0.81 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF84-208 - 738 5.1e-13 48.7 140.3 11 19 0.00042 0.47 10.5 0.5 2 12 487 497 487 509 0.84 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF84-208 - 738 5.1e-13 48.7 140.3 12 19 0.017 19 5.4 3.4 2 24 515 537 515 540 0.76 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF84-208 - 738 5.1e-13 48.7 140.3 13 19 3.2e-05 0.035 14.1 1.2 2 24 543 565 543 568 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF84-208 - 738 5.1e-13 48.7 140.3 14 19 0.22 2.4e+02 1.9 0.6 2 22 571 591 571 595 0.83 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF84-208 - 738 5.1e-13 48.7 140.3 15 19 0.0096 11 6.2 0.7 2 24 599 621 599 624 0.90 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF84-208 - 738 5.1e-13 48.7 140.3 16 19 0.0036 4.1 7.5 0.3 2 21 627 646 627 651 0.81 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF84-208 - 738 5.1e-13 48.7 140.3 17 19 0.00016 0.18 11.8 1.3 2 24 655 677 655 680 0.87 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF84-208 - 738 5.1e-13 48.7 140.3 18 19 0.056 63 3.7 0.5 2 12 683 693 683 694 0.90 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF84-208 - 738 5.1e-13 48.7 140.3 19 19 0.011 12 6.0 0.7 2 24 711 733 711 734 0.87 C2H2-type zinc finger zinc_ribbon_15 PF17032.5 86 ZNF84-208 - 738 1.9e-10 41.3 80.0 1 15 0.066 73 4.2 0.7 19 77 159 218 155 221 0.63 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF84-208 - 738 1.9e-10 41.3 80.0 2 15 0.0014 1.5 9.6 2.2 34 81 203 250 178 253 0.80 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF84-208 - 738 1.9e-10 41.3 80.0 3 15 0.00016 0.18 12.6 2.6 25 77 250 302 247 305 0.89 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF84-208 - 738 1.9e-10 41.3 80.0 4 15 0.00032 0.35 11.6 0.8 26 78 307 359 303 365 0.88 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF84-208 - 738 1.9e-10 41.3 80.0 5 15 0.0034 3.8 8.3 0.8 30 75 339 384 332 391 0.86 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF84-208 - 738 1.9e-10 41.3 80.0 6 15 0.016 18 6.2 4.4 31 77 396 442 362 448 0.68 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF84-208 - 738 1.9e-10 41.3 80.0 7 15 0.0073 8.2 7.3 1.3 33 78 426 471 416 479 0.84 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF84-208 - 738 1.9e-10 41.3 80.0 8 15 0.00018 0.2 12.4 1.6 35 78 456 499 444 505 0.86 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF84-208 - 738 1.9e-10 41.3 80.0 9 15 0.0048 5.4 7.8 2.9 33 78 482 527 474 530 0.84 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF84-208 - 738 1.9e-10 41.3 80.0 10 15 0.0041 4.6 8.1 3.5 33 77 510 554 504 562 0.84 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF84-208 - 738 1.9e-10 41.3 80.0 11 15 0.00047 0.53 11.1 2.9 32 79 537 584 529 589 0.86 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF84-208 - 738 1.9e-10 41.3 80.0 12 15 0.023 25 5.7 3.1 35 75 568 608 560 613 0.83 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF84-208 - 738 1.9e-10 41.3 80.0 13 15 0.0032 3.6 8.4 1.9 32 78 593 639 588 645 0.87 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF84-208 - 738 1.9e-10 41.3 80.0 14 15 0.0024 2.7 8.8 1.3 29 78 618 667 614 673 0.84 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF84-208 - 738 1.9e-10 41.3 80.0 15 15 0.0004 0.45 11.3 1.6 26 79 671 724 667 727 0.88 zinc-ribbon family # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF84-208.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF84-208.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF84-208.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF84-208.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF84-208.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:15:17 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- KRAB PF01352.27 42 ZNF84-209 - 97 6e-24 83.4 0.4 1 1 4.5e-28 8.1e-24 83.0 0.4 3 42 9 48 7 48 0.97 KRAB box # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF84-209.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF84-209.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF84-209.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF84-209.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF84-209.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:15:17 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF84-210.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF84-210.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF84-210.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF84-210.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF84-210.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:15:17 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- KRAB PF01352.27 42 ZNF84-211 - 97 6e-24 83.4 0.4 1 1 4.5e-28 8.1e-24 83.0 0.4 3 42 9 48 7 48 0.97 KRAB box # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF84-211.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF84-211.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF84-211.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF84-211.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF84-211.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:15:18 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- KRAB PF01352.27 42 ZNF84-212 - 84 3.9e-24 84.0 0.4 1 1 3.2e-28 5.7e-24 83.5 0.4 3 42 9 48 7 48 0.97 KRAB box # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF84-212.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF84-212.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF84-212.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF84-212.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF84-212.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:15:18 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF84-213.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF84-213.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF84-213.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF84-213.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF84-213.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:15:18 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF84-214.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF84-214.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF84-214.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF84-214.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF84-214.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:15:19 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZNF84-215 - 737 2.7e-148 476.5 119.5 1 20 7.2e-06 0.0081 16.6 0.1 9 25 197 216 193 217 0.84 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF84-215 - 737 2.7e-148 476.5 119.5 2 20 0.17 1.9e+02 2.8 0.1 2 24 221 243 220 245 0.83 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF84-215 - 737 2.7e-148 476.5 119.5 3 20 1.3e-09 1.4e-06 28.4 2.3 5 25 252 272 249 273 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF84-215 - 737 2.7e-148 476.5 119.5 4 20 1.3e-11 1.5e-08 34.7 0.4 2 25 277 300 276 301 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF84-215 - 737 2.7e-148 476.5 119.5 5 20 4.1e-07 0.00046 20.5 0.3 2 25 305 328 304 329 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF84-215 - 737 2.7e-148 476.5 119.5 6 20 1.8e-11 2e-08 34.3 0.2 1 25 332 356 332 357 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF84-215 - 737 2.7e-148 476.5 119.5 7 20 7.9e-07 0.00088 19.6 1.9 2 24 361 383 360 384 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF84-215 - 737 2.7e-148 476.5 119.5 8 20 5.3e-11 6e-08 32.8 0.5 2 24 389 411 388 412 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF84-215 - 737 2.7e-148 476.5 119.5 9 20 3.9e-09 4.4e-06 26.9 0.2 2 25 417 440 416 441 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF84-215 - 737 2.7e-148 476.5 119.5 10 20 1.8e-08 2e-05 24.8 0.8 1 25 444 468 444 469 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF84-215 - 737 2.7e-148 476.5 119.5 11 20 3e-13 3.4e-10 39.9 0.4 2 25 473 496 472 497 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF84-215 - 737 2.7e-148 476.5 119.5 12 20 4.1e-11 4.6e-08 33.1 0.2 1 24 500 523 500 523 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF84-215 - 737 2.7e-148 476.5 119.5 13 20 5.7e-12 6.3e-09 35.9 0.7 1 25 528 552 528 553 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF84-215 - 737 2.7e-148 476.5 119.5 14 20 7.3e-11 8.1e-08 32.4 0.4 2 25 557 580 556 581 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF84-215 - 737 2.7e-148 476.5 119.5 15 20 5.3e-12 6e-09 35.9 0.6 2 24 585 607 584 608 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF84-215 - 737 2.7e-148 476.5 119.5 16 20 5.2e-12 5.8e-09 36.0 0.8 2 24 613 635 612 636 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF84-215 - 737 2.7e-148 476.5 119.5 17 20 8.1e-12 9e-09 35.4 0.2 2 25 641 664 640 665 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF84-215 - 737 2.7e-148 476.5 119.5 18 20 4.6e-09 5.2e-06 26.6 1.3 5 25 672 692 668 693 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF84-215 - 737 2.7e-148 476.5 119.5 19 20 2.2e-11 2.5e-08 34.0 0.1 2 25 697 720 696 721 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF84-215 - 737 2.7e-148 476.5 119.5 20 20 0.065 73 4.1 0.3 2 13 725 736 724 737 0.86 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZNF84-215 - 737 1e-107 347.0 144.4 1 19 1.5e-06 0.0017 18.7 2.3 1 23 206 228 206 228 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF84-215 - 737 1e-107 347.0 144.4 2 19 2.7e-07 0.0003 21.1 2.1 3 23 236 256 234 256 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF84-215 - 737 1e-107 347.0 144.4 3 19 1.7e-09 1.9e-06 28.0 1.6 1 23 262 284 262 284 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF84-215 - 737 1e-107 347.0 144.4 4 19 5.4e-10 6.1e-07 29.6 1.0 1 23 290 312 290 312 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF84-215 - 737 1e-107 347.0 144.4 5 19 7.1e-08 7.9e-05 22.9 0.2 3 23 320 340 318 340 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF84-215 - 737 1e-107 347.0 144.4 6 19 7.9e-09 8.9e-06 25.9 2.7 1 23 346 368 346 368 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF84-215 - 737 1e-107 347.0 144.4 7 19 2.5e-05 0.028 14.9 0.5 3 23 376 396 374 396 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF84-215 - 737 1e-107 347.0 144.4 8 19 1.4e-07 0.00016 21.9 1.1 1 23 402 424 402 424 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF84-215 - 737 1e-107 347.0 144.4 9 19 9.2e-07 0.001 19.4 1.1 5 23 434 452 431 452 0.95 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF84-215 - 737 1e-107 347.0 144.4 10 19 5.9e-10 6.6e-07 29.4 1.5 1 23 458 480 458 480 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF84-215 - 737 1e-107 347.0 144.4 11 19 2.5e-07 0.00028 21.2 0.3 1 23 486 508 486 508 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF84-215 - 737 1e-107 347.0 144.4 12 19 3.9e-09 4.4e-06 26.9 3.9 1 23 514 536 514 536 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF84-215 - 737 1e-107 347.0 144.4 13 19 6.1e-08 6.9e-05 23.1 0.2 1 23 542 564 542 564 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF84-215 - 737 1e-107 347.0 144.4 14 19 7.2e-09 8.1e-06 26.0 0.8 1 23 570 592 570 592 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF84-215 - 737 1e-107 347.0 144.4 15 19 7.1e-07 0.0008 19.7 1.0 1 23 598 620 598 620 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF84-215 - 737 1e-107 347.0 144.4 16 19 1.1e-07 0.00013 22.3 0.6 1 23 626 648 626 648 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF84-215 - 737 1e-107 347.0 144.4 17 19 3e-08 3.4e-05 24.1 1.6 1 23 654 676 654 676 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF84-215 - 737 1e-107 347.0 144.4 18 19 1.8e-07 0.0002 21.6 0.6 3 23 684 704 682 704 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF84-215 - 737 1e-107 347.0 144.4 19 19 3.4e-08 3.8e-05 23.9 0.6 1 23 710 732 710 732 0.97 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZNF84-215 - 737 3.6e-66 214.1 141.3 1 19 2.2e-05 0.024 15.4 1.4 1 23 206 228 206 229 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF84-215 - 737 3.6e-66 214.1 141.3 2 19 0.00013 0.15 13.0 1.3 2 23 235 256 234 257 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF84-215 - 737 3.6e-66 214.1 141.3 3 19 1.6e-06 0.0018 19.0 1.3 1 23 262 284 262 285 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF84-215 - 737 3.6e-66 214.1 141.3 4 19 7e-07 0.00078 20.1 1.1 1 23 290 312 290 313 0.97 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF84-215 - 737 3.6e-66 214.1 141.3 5 19 3.5e-05 0.039 14.8 0.1 2 23 319 340 318 341 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF84-215 - 737 3.6e-66 214.1 141.3 6 19 5.3e-06 0.006 17.3 2.3 1 23 346 368 346 369 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF84-215 - 737 3.6e-66 214.1 141.3 7 19 0.00061 0.68 10.9 0.4 1 23 374 396 374 397 0.91 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF84-215 - 737 3.6e-66 214.1 141.3 8 19 1.1e-05 0.012 16.4 0.8 1 23 402 424 402 425 0.97 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF84-215 - 737 3.6e-66 214.1 141.3 9 19 0.0002 0.22 12.5 2.0 3 23 432 452 430 453 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF84-215 - 737 3.6e-66 214.1 141.3 10 19 5.6e-07 0.00063 20.4 1.4 1 23 458 480 458 481 0.97 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF84-215 - 737 3.6e-66 214.1 141.3 11 19 1e-05 0.012 16.4 0.4 1 23 486 508 486 509 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF84-215 - 737 3.6e-66 214.1 141.3 12 19 3e-05 0.034 15.0 3.8 1 23 514 536 514 537 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF84-215 - 737 3.6e-66 214.1 141.3 13 19 7.6e-06 0.0085 16.9 0.3 1 23 542 564 542 565 0.97 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF84-215 - 737 3.6e-66 214.1 141.3 14 19 1.7e-05 0.019 15.8 0.7 1 23 570 592 570 593 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF84-215 - 737 3.6e-66 214.1 141.3 15 19 1.8e-06 0.002 18.8 1.0 1 23 598 620 598 621 0.97 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF84-215 - 737 3.6e-66 214.1 141.3 16 19 3.1e-05 0.035 15.0 0.5 1 23 626 648 626 649 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF84-215 - 737 3.6e-66 214.1 141.3 17 19 1.2e-05 0.013 16.2 1.5 1 23 654 676 654 677 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF84-215 - 737 3.6e-66 214.1 141.3 18 19 4.9e-05 0.055 14.3 0.6 2 23 683 704 682 705 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF84-215 - 737 3.6e-66 214.1 141.3 19 19 2e-06 0.0023 18.6 0.5 1 23 710 732 710 733 0.96 C2H2-type zinc finger KRAB PF01352.27 42 ZNF84-215 - 737 8.7e-23 79.7 0.4 1 1 1.8e-25 2.1e-22 78.5 0.4 3 42 9 48 7 48 0.97 KRAB box zf-C2H2_jaz PF12171.8 27 ZNF84-215 - 737 1.2e-17 63.7 98.1 1 19 0.021 24 5.4 0.3 2 21 206 225 205 226 0.86 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF84-215 - 737 1.2e-17 63.7 98.1 2 19 0.39 4.4e+02 1.3 0.5 4 20 236 252 234 256 0.87 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF84-215 - 737 1.2e-17 63.7 98.1 3 19 0.0043 4.8 7.6 0.9 2 24 262 284 261 284 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF84-215 - 737 1.2e-17 63.7 98.1 4 19 0.0043 4.8 7.6 0.1 2 24 290 312 289 312 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF84-215 - 737 1.2e-17 63.7 98.1 5 19 0.046 51 4.3 0.1 4 22 320 338 318 338 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF84-215 - 737 1.2e-17 63.7 98.1 6 19 0.0009 1 9.7 0.2 2 20 346 364 345 368 0.91 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF84-215 - 737 1.2e-17 63.7 98.1 7 19 0.92 1e+03 0.2 0.1 4 21 376 393 373 394 0.87 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF84-215 - 737 1.2e-17 63.7 98.1 8 19 9.4e-05 0.11 12.9 0.2 2 24 402 424 401 430 0.88 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF84-215 - 737 1.2e-17 63.7 98.1 9 19 1.1 1.2e+03 -0.1 0.3 4 20 432 448 431 449 0.79 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF84-215 - 737 1.2e-17 63.7 98.1 10 19 0.0021 2.4 8.6 0.2 2 24 458 480 457 480 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF84-215 - 737 1.2e-17 63.7 98.1 11 19 0.0013 1.5 9.2 0.1 2 22 486 506 485 506 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF84-215 - 737 1.2e-17 63.7 98.1 12 19 3.5 4e+03 -1.7 1.5 2 14 514 526 513 536 0.66 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF84-215 - 737 1.2e-17 63.7 98.1 13 19 0.0016 1.8 8.9 0.1 2 24 542 564 541 564 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF84-215 - 737 1.2e-17 63.7 98.1 14 19 0.015 17 5.9 0.4 2 22 570 590 569 590 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF84-215 - 737 1.2e-17 63.7 98.1 15 19 0.00068 0.77 10.1 0.2 2 24 598 620 597 620 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF84-215 - 737 1.2e-17 63.7 98.1 16 19 0.0014 1.5 9.2 0.3 2 22 626 646 625 646 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF84-215 - 737 1.2e-17 63.7 98.1 17 19 0.021 23 5.4 0.2 2 23 654 675 653 676 0.84 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF84-215 - 737 1.2e-17 63.7 98.1 18 19 0.0031 3.4 8.1 0.3 4 22 684 702 682 702 0.95 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF84-215 - 737 1.2e-17 63.7 98.1 19 19 9.4e-05 0.1 12.9 0.5 2 24 710 732 709 736 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_6 PF13912.6 27 ZNF84-215 - 737 4.9e-13 48.7 140.3 1 19 1.1e-05 0.013 15.5 0.7 2 24 206 228 205 230 0.95 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF84-215 - 737 4.9e-13 48.7 140.3 2 19 0.18 2e+02 2.2 0.6 2 12 234 244 233 258 0.79 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF84-215 - 737 4.9e-13 48.7 140.3 3 19 0.00055 0.62 10.1 2.6 2 24 262 284 262 287 0.92 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF84-215 - 737 4.9e-13 48.7 140.3 4 19 0.0023 2.6 8.2 1.4 2 24 290 312 290 315 0.90 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF84-215 - 737 4.9e-13 48.7 140.3 5 19 0.012 13 5.9 0.2 2 20 318 336 318 342 0.79 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF84-215 - 737 4.9e-13 48.7 140.3 6 19 0.0021 2.4 8.3 2.5 2 24 346 368 346 370 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF84-215 - 737 4.9e-13 48.7 140.3 7 19 6.4 7.2e+03 -2.8 0.5 2 11 374 383 374 383 0.88 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF84-215 - 737 4.9e-13 48.7 140.3 8 19 0.00015 0.17 11.9 0.6 2 24 402 424 402 427 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF84-215 - 737 4.9e-13 48.7 140.3 9 19 0.23 2.6e+02 1.8 1.0 2 12 430 440 430 453 0.79 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF84-215 - 737 4.9e-13 48.7 140.3 10 19 0.0029 3.3 7.8 1.0 2 24 458 480 458 483 0.81 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF84-215 - 737 4.9e-13 48.7 140.3 11 19 0.00042 0.47 10.5 0.5 2 12 486 496 486 508 0.84 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF84-215 - 737 4.9e-13 48.7 140.3 12 19 0.017 19 5.4 3.4 2 24 514 536 514 539 0.76 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF84-215 - 737 4.9e-13 48.7 140.3 13 19 3.1e-05 0.035 14.1 1.2 2 24 542 564 542 567 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF84-215 - 737 4.9e-13 48.7 140.3 14 19 0.21 2.4e+02 1.9 0.6 2 22 570 590 570 594 0.83 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF84-215 - 737 4.9e-13 48.7 140.3 15 19 0.0096 11 6.2 0.7 2 24 598 620 598 623 0.90 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF84-215 - 737 4.9e-13 48.7 140.3 16 19 0.0036 4 7.5 0.3 2 21 626 645 626 650 0.81 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF84-215 - 737 4.9e-13 48.7 140.3 17 19 0.00016 0.18 11.8 1.3 2 24 654 676 654 679 0.87 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF84-215 - 737 4.9e-13 48.7 140.3 18 19 0.056 63 3.7 0.5 2 12 682 692 682 693 0.90 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF84-215 - 737 4.9e-13 48.7 140.3 19 19 0.011 12 6.0 0.7 2 24 710 732 710 733 0.87 C2H2-type zinc finger zinc_ribbon_15 PF17032.5 86 ZNF84-215 - 737 1.8e-10 41.4 80.0 1 14 0.065 73 4.2 0.7 19 77 158 217 154 220 0.63 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF84-215 - 737 1.8e-10 41.4 80.0 2 14 0.0013 1.5 9.6 2.2 34 81 202 249 177 252 0.80 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF84-215 - 737 1.8e-10 41.4 80.0 3 14 0.00016 0.18 12.6 2.6 25 77 249 301 246 304 0.89 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF84-215 - 737 1.8e-10 41.4 80.0 4 14 0.00032 0.36 11.6 0.8 26 78 306 358 302 364 0.88 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF84-215 - 737 1.8e-10 41.4 80.0 5 14 0.0034 3.8 8.3 0.8 30 75 338 383 331 390 0.86 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF84-215 - 737 1.8e-10 41.4 80.0 6 14 0.017 19 6.1 4.4 31 77 395 441 361 445 0.67 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF84-215 - 737 1.8e-10 41.4 80.0 7 14 0.00018 0.2 12.4 1.6 35 78 455 498 443 504 0.86 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF84-215 - 737 1.8e-10 41.4 80.0 8 14 0.0049 5.5 7.8 3.0 33 78 481 526 473 529 0.84 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF84-215 - 737 1.8e-10 41.4 80.0 9 14 0.0042 4.7 8.0 3.5 33 77 509 553 503 561 0.84 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF84-215 - 737 1.8e-10 41.4 80.0 10 14 0.00047 0.53 11.1 2.9 32 79 536 583 528 588 0.86 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF84-215 - 737 1.8e-10 41.4 80.0 11 14 0.022 25 5.7 3.1 35 75 567 607 559 612 0.83 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF84-215 - 737 1.8e-10 41.4 80.0 12 14 0.0033 3.7 8.4 1.9 32 78 592 638 587 644 0.87 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF84-215 - 737 1.8e-10 41.4 80.0 13 14 0.0024 2.7 8.8 1.3 29 78 617 666 613 672 0.84 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF84-215 - 737 1.8e-10 41.4 80.0 14 14 0.00039 0.44 11.3 1.6 26 79 670 723 666 726 0.88 zinc-ribbon family # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF84-215.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF84-215.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF84-215.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF84-215.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF84-215.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:15:19 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF84-216.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF84-216.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF84-216.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF84-216.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF84-216.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:15:20 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF843-201.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF843-201.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF843-201.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF843-201.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF843-201.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:15:20 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF843-202.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF843-202.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF843-202.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF843-202.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF843-202.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:15:21 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF843-203.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF843-203.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF843-203.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF843-203.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF843-203.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:15:21 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF846-201.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF846-201.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF846-201.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF846-201.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF846-201.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:15:21 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF846-202.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF846-202.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF846-202.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF846-202.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF846-202.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:15:22 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF846-203.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF846-203.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF846-203.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF846-203.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF846-203.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:15:22 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF846-204.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF846-204.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF846-204.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF846-204.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF846-204.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:15:22 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZNF846-205 - 249 5.4e-38 127.7 39.7 1 7 0.23 1.3e+02 3.3 0.3 4 13 2 11 1 14 0.89 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF846-205 - 249 5.4e-38 127.7 39.7 2 7 0.0084 4.7 7.8 0.7 7 25 61 79 56 80 0.88 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF846-205 - 249 5.4e-38 127.7 39.7 3 7 1.7e-09 9.6e-07 29.0 0.9 1 26 83 108 83 108 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF846-205 - 249 5.4e-38 127.7 39.7 4 7 9.6e-09 5.4e-06 26.6 0.4 5 26 115 136 109 136 0.84 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF846-205 - 249 5.4e-38 127.7 39.7 5 7 7.2e-12 4.1e-09 36.5 2.3 1 26 139 164 139 164 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF846-205 - 249 5.4e-38 127.7 39.7 6 7 1.5e-10 8.5e-08 32.3 0.6 2 26 168 192 167 192 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF846-205 - 249 5.4e-38 127.7 39.7 7 7 1.1e-05 0.0064 16.9 0.1 2 16 196 210 195 210 0.88 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZNF846-205 - 249 2.4e-27 93.8 47.4 1 5 2.9e-06 0.0016 18.8 2.6 2 23 70 91 69 91 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF846-205 - 249 2.4e-27 93.8 47.4 2 5 2e-08 1.1e-05 25.6 0.4 1 23 97 119 97 119 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF846-205 - 249 2.4e-27 93.8 47.4 3 5 2e-09 1.1e-06 28.7 0.3 1 23 125 147 125 147 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF846-205 - 249 2.4e-27 93.8 47.4 4 5 1.2e-08 6.5e-06 26.3 2.9 1 23 153 175 153 175 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF846-205 - 249 2.4e-27 93.8 47.4 5 5 9.4e-09 5.3e-06 26.6 0.1 1 23 181 203 181 203 0.99 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZNF846-205 - 249 4.2e-13 48.9 35.0 1 5 0.0073 4.1 8.5 2.4 2 23 70 91 69 92 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF846-205 - 249 4.2e-13 48.9 35.0 2 5 0.00012 0.068 14.0 0.4 1 19 97 115 97 119 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF846-205 - 249 4.2e-13 48.9 35.0 3 5 3.6e-06 0.002 18.8 0.4 1 23 125 147 125 148 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF846-205 - 249 4.2e-13 48.9 35.0 4 5 0.00017 0.094 13.6 1.9 1 23 153 175 153 176 0.84 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF846-205 - 249 4.2e-13 48.9 35.0 5 5 3.7e-05 0.021 15.6 0.1 1 23 181 203 181 204 0.95 C2H2-type zinc finger zf-C2H2_jaz PF12171.8 27 ZNF846-205 - 249 3.1e-09 36.9 15.3 1 5 9.1e-05 0.051 13.9 0.9 4 24 71 91 70 92 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF846-205 - 249 3.1e-09 36.9 15.3 2 5 0.0023 1.3 9.4 0.6 2 20 97 115 94 115 0.91 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF846-205 - 249 3.1e-09 36.9 15.3 3 5 0.0044 2.5 8.5 0.1 2 24 125 147 124 148 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF846-205 - 249 3.1e-09 36.9 15.3 4 5 0.0044 2.5 8.5 0.2 2 21 153 172 152 173 0.90 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF846-205 - 249 3.1e-09 36.9 15.3 5 5 0.23 1.3e+02 3.0 0.0 2 21 181 200 180 201 0.83 Zinc-finger double-stranded RNA-binding XPA_N PF01286.18 32 ZNF846-205 - 249 9e-09 35.2 19.2 1 5 1 5.7e+02 0.7 1.5 3 13 70 80 69 82 0.87 XPA protein N-terminal XPA_N PF01286.18 32 ZNF846-205 - 249 9e-09 35.2 19.2 2 5 0.0014 0.76 9.9 0.2 3 14 98 109 97 112 0.91 XPA protein N-terminal XPA_N PF01286.18 32 ZNF846-205 - 249 9e-09 35.2 19.2 3 5 0.00091 0.51 10.4 0.1 3 14 126 137 124 138 0.91 XPA protein N-terminal XPA_N PF01286.18 32 ZNF846-205 - 249 9e-09 35.2 19.2 4 5 7.6e-05 0.043 13.9 0.2 3 18 154 169 152 171 0.82 XPA protein N-terminal XPA_N PF01286.18 32 ZNF846-205 - 249 9e-09 35.2 19.2 5 5 0.0015 0.86 9.7 0.0 3 14 182 193 180 194 0.90 XPA protein N-terminal zf-trcl PF13451.6 48 ZNF846-205 - 249 2.8e-07 30.3 16.5 1 5 0.31 1.7e+02 2.2 1.1 4 14 68 78 64 82 0.73 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF846-205 - 249 2.8e-07 30.3 16.5 2 5 0.00042 0.24 11.3 0.1 2 14 94 106 93 110 0.92 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF846-205 - 249 2.8e-07 30.3 16.5 3 5 0.002 1.1 9.2 0.1 3 15 123 135 121 139 0.87 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF846-205 - 249 2.8e-07 30.3 16.5 4 5 0.0014 0.81 9.6 0.1 3 17 151 165 149 167 0.87 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF846-205 - 249 2.8e-07 30.3 16.5 5 5 0.02 11 6.0 0.1 3 15 179 191 178 195 0.89 Probable zinc-ribbon domain zf-C2H2_6 PF13912.6 27 ZNF846-205 - 249 9.7e-07 28.6 32.1 1 7 2.5 1.4e+03 -0.6 0.2 18 24 1 7 1 8 0.90 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF846-205 - 249 9.7e-07 28.6 32.1 2 7 5.6 3.1e+03 -1.7 0.0 12 18 17 23 17 24 0.86 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF846-205 - 249 9.7e-07 28.6 32.1 3 7 2.2 1.2e+03 -0.4 0.4 3 24 70 91 70 92 0.76 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF846-205 - 249 9.7e-07 28.6 32.1 4 7 0.00018 0.1 12.6 1.4 1 20 96 115 96 122 0.82 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF846-205 - 249 9.7e-07 28.6 32.1 5 7 0.00043 0.24 11.4 0.6 2 24 125 147 125 150 0.81 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF846-205 - 249 9.7e-07 28.6 32.1 6 7 0.00077 0.43 10.6 0.8 2 12 153 163 153 176 0.90 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF846-205 - 249 9.7e-07 28.6 32.1 7 7 0.00016 0.088 12.8 0.1 2 24 181 203 181 206 0.93 C2H2-type zinc finger # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF846-205.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF846-205.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF846-205.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF846-205.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF846-205.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:15:23 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF846-206.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF846-206.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF846-206.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF846-206.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF846-206.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:15:23 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF846-207.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF846-207.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF846-207.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF846-207.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF846-207.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:15:23 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZNF846-208 - 228 1.2e-38 129.8 39.0 1 7 0.21 1.2e+02 3.4 0.3 4 13 2 11 1 14 0.89 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF846-208 - 228 1.2e-38 129.8 39.0 2 7 0.0074 4.2 8.0 0.7 7 25 61 79 56 80 0.88 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF846-208 - 228 1.2e-38 129.8 39.0 3 7 1.5e-09 8.5e-07 29.1 0.9 1 26 83 108 83 108 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF846-208 - 228 1.2e-38 129.8 39.0 4 7 8.5e-09 4.8e-06 26.8 0.4 5 26 115 136 109 136 0.84 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF846-208 - 228 1.2e-38 129.8 39.0 5 7 6.4e-12 3.6e-09 36.6 2.3 1 26 139 164 139 164 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF846-208 - 228 1.2e-38 129.8 39.0 6 7 1.3e-10 7.6e-08 32.5 0.6 2 26 168 192 167 192 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF846-208 - 228 1.2e-38 129.8 39.0 7 7 6.7e-06 0.0038 17.6 0.0 2 16 196 210 195 213 0.87 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZNF846-208 - 228 1.9e-27 94.2 48.0 1 5 2.5e-06 0.0014 18.9 2.6 2 23 70 91 69 91 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF846-208 - 228 1.9e-27 94.2 48.0 2 5 1.8e-08 9.9e-06 25.7 0.4 1 23 97 119 97 119 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF846-208 - 228 1.9e-27 94.2 48.0 3 5 1.8e-09 1e-06 28.9 0.3 1 23 125 147 125 147 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF846-208 - 228 1.9e-27 94.2 48.0 4 5 1e-08 5.7e-06 26.5 2.9 1 23 153 175 153 175 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF846-208 - 228 1.9e-27 94.2 48.0 5 5 8.3e-09 4.7e-06 26.8 0.1 1 23 181 203 181 203 0.99 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZNF846-208 - 228 1.5e-13 50.3 34.3 1 5 0.0064 3.6 8.7 2.4 2 23 70 91 69 92 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF846-208 - 228 1.5e-13 50.3 34.3 2 5 0.00011 0.061 14.2 0.4 1 19 97 115 97 119 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF846-208 - 228 1.5e-13 50.3 34.3 3 5 3.2e-06 0.0018 19.0 0.4 1 23 125 147 125 148 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF846-208 - 228 1.5e-13 50.3 34.3 4 5 0.00015 0.084 13.8 1.9 1 23 153 175 153 176 0.84 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF846-208 - 228 1.5e-13 50.3 34.3 5 5 3.3e-05 0.018 15.8 0.1 1 23 181 203 181 204 0.95 C2H2-type zinc finger zf-C2H2_jaz PF12171.8 27 ZNF846-208 - 228 1.7e-09 37.7 15.3 1 5 8.1e-05 0.045 14.0 0.9 4 24 71 91 70 92 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF846-208 - 228 1.7e-09 37.7 15.3 2 5 0.002 1.1 9.6 0.6 2 20 97 115 94 115 0.91 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF846-208 - 228 1.7e-09 37.7 15.3 3 5 0.0039 2.2 8.7 0.1 2 24 125 147 124 148 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF846-208 - 228 1.7e-09 37.7 15.3 4 5 0.0039 2.2 8.7 0.2 2 21 153 172 152 173 0.90 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF846-208 - 228 1.7e-09 37.7 15.3 5 5 0.2 1.1e+02 3.2 0.0 2 21 181 200 180 201 0.83 Zinc-finger double-stranded RNA-binding XPA_N PF01286.18 32 ZNF846-208 - 228 8.7e-09 35.3 19.9 1 6 9.8 5.5e+03 -2.5 0.0 9 16 24 31 23 34 0.80 XPA protein N-terminal XPA_N PF01286.18 32 ZNF846-208 - 228 8.7e-09 35.3 19.9 2 6 0.92 5.2e+02 0.8 1.5 3 13 70 80 69 82 0.87 XPA protein N-terminal XPA_N PF01286.18 32 ZNF846-208 - 228 8.7e-09 35.3 19.9 3 6 0.0012 0.68 10.0 0.2 3 14 98 109 97 112 0.91 XPA protein N-terminal XPA_N PF01286.18 32 ZNF846-208 - 228 8.7e-09 35.3 19.9 4 6 0.00082 0.46 10.6 0.1 3 14 126 137 124 138 0.91 XPA protein N-terminal XPA_N PF01286.18 32 ZNF846-208 - 228 8.7e-09 35.3 19.9 5 6 6.8e-05 0.038 14.0 0.2 3 18 154 169 152 171 0.82 XPA protein N-terminal XPA_N PF01286.18 32 ZNF846-208 - 228 8.7e-09 35.3 19.9 6 6 0.0014 0.77 9.9 0.0 3 14 182 193 180 194 0.90 XPA protein N-terminal zf-trcl PF13451.6 48 ZNF846-208 - 228 1.7e-07 31.0 16.5 1 5 0.28 1.6e+02 2.3 1.1 4 14 68 78 64 82 0.73 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF846-208 - 228 1.7e-07 31.0 16.5 2 5 0.00038 0.21 11.5 0.1 2 14 94 106 93 110 0.92 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF846-208 - 228 1.7e-07 31.0 16.5 3 5 0.0018 1 9.3 0.1 3 15 123 135 121 139 0.87 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF846-208 - 228 1.7e-07 31.0 16.5 4 5 0.0013 0.73 9.8 0.1 3 17 151 165 149 167 0.87 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF846-208 - 228 1.7e-07 31.0 16.5 5 5 0.018 10 6.1 0.1 3 15 179 191 178 195 0.89 Probable zinc-ribbon domain zf-C2H2_6 PF13912.6 27 ZNF846-208 - 228 5.3e-07 29.5 32.1 1 7 2.3 1.3e+03 -0.4 0.2 18 24 1 7 1 8 0.90 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF846-208 - 228 5.3e-07 29.5 32.1 2 7 5.1 2.8e+03 -1.5 0.0 12 18 17 23 17 24 0.86 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF846-208 - 228 5.3e-07 29.5 32.1 3 7 1.9 1.1e+03 -0.2 0.4 3 24 70 91 70 92 0.76 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF846-208 - 228 5.3e-07 29.5 32.1 4 7 0.00016 0.09 12.8 1.4 1 20 96 115 96 122 0.82 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF846-208 - 228 5.3e-07 29.5 32.1 5 7 0.00038 0.21 11.6 0.6 2 24 125 147 125 150 0.81 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF846-208 - 228 5.3e-07 29.5 32.1 6 7 0.00069 0.39 10.8 0.8 2 12 153 163 153 176 0.90 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF846-208 - 228 5.3e-07 29.5 32.1 7 7 0.00014 0.078 13.0 0.1 2 24 181 203 181 206 0.93 C2H2-type zinc finger # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF846-208.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF846-208.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF846-208.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF846-208.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF846-208.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:15:24 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF846-209.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF846-209.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF846-209.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF846-209.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF846-209.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:15:24 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF846-210.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF846-210.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF846-210.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF846-210.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF846-210.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:15:24 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF846-211.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF846-211.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF846-211.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF846-211.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF846-211.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:15:25 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF846-212.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF846-212.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF846-212.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF846-212.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF846-212.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:15:25 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF85-201.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF85-201.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF85-201.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF85-201.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF85-201.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:15:26 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZNF85-202 - 595 3.6e-126 406.5 144.0 1 17 3.2 2.1e+03 -0.5 0.0 10 19 141 150 141 154 0.80 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF85-202 - 595 3.6e-126 406.5 144.0 2 17 7.6e-09 4.9e-06 26.7 3.5 3 24 162 183 160 184 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF85-202 - 595 3.6e-126 406.5 144.0 3 17 7.6e-08 4.9e-05 23.6 0.6 2 25 189 212 189 212 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF85-202 - 595 3.6e-126 406.5 144.0 4 17 6.9e-12 4.4e-09 36.4 1.5 2 25 217 240 216 241 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF85-202 - 595 3.6e-126 406.5 144.0 5 17 1.5e-11 9.4e-09 35.3 1.9 1 25 244 268 244 269 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF85-202 - 595 3.6e-126 406.5 144.0 6 17 1.9e-10 1.2e-07 31.8 1.4 2 25 273 296 272 297 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF85-202 - 595 3.6e-126 406.5 144.0 7 17 3.2e-11 2e-08 34.3 1.8 2 26 301 325 300 325 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF85-202 - 595 3.6e-126 406.5 144.0 8 17 3.4e-11 2.2e-08 34.2 1.3 1 25 328 352 328 353 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF85-202 - 595 3.6e-126 406.5 144.0 9 17 1.1e-09 7e-07 29.4 3.7 1 26 356 381 356 381 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF85-202 - 595 3.6e-126 406.5 144.0 10 17 2.3e-10 1.5e-07 31.5 5.2 1 26 384 409 384 409 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF85-202 - 595 3.6e-126 406.5 144.0 11 17 1.3e-10 8.3e-08 32.3 1.8 2 25 413 436 412 437 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF85-202 - 595 3.6e-126 406.5 144.0 12 17 1.9e-11 1.2e-08 35.0 1.7 2 25 441 464 440 465 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF85-202 - 595 3.6e-126 406.5 144.0 13 17 1.5e-10 9.8e-08 32.1 3.5 1 25 468 492 468 492 0.98 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF85-202 - 595 3.6e-126 406.5 144.0 14 17 3.3e-10 2.1e-07 31.0 0.4 3 25 498 520 497 521 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF85-202 - 595 3.6e-126 406.5 144.0 15 17 1.5e-11 9.3e-09 35.3 1.9 2 25 525 548 524 549 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF85-202 - 595 3.6e-126 406.5 144.0 16 17 1.7e-12 1.1e-09 38.3 2.4 1 25 552 576 552 576 0.98 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF85-202 - 595 3.6e-126 406.5 144.0 17 17 0.031 20 5.8 0.2 2 13 581 592 581 594 0.93 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZNF85-202 - 595 1.4e-81 264.6 114.7 1 15 5.2e-05 0.033 14.6 2.5 1 23 174 196 174 196 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF85-202 - 595 1.4e-81 264.6 114.7 2 15 6.8e-07 0.00043 20.6 0.6 1 23 202 224 202 224 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF85-202 - 595 1.4e-81 264.6 114.7 3 15 4.4e-09 2.8e-06 27.4 0.5 1 23 230 252 230 252 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF85-202 - 595 1.4e-81 264.6 114.7 4 15 1.7e-07 0.00011 22.5 1.2 1 23 258 280 258 280 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF85-202 - 595 1.4e-81 264.6 114.7 5 15 1e-08 6.6e-06 26.3 1.7 1 23 286 308 286 308 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF85-202 - 595 1.4e-81 264.6 114.7 6 15 8.5e-09 5.4e-06 26.6 0.5 1 23 314 336 314 336 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF85-202 - 595 1.4e-81 264.6 114.7 7 15 3.3e-07 0.00021 21.5 1.3 1 23 342 364 342 364 0.94 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF85-202 - 595 1.4e-81 264.6 114.7 8 15 1.7e-06 0.0011 19.3 4.4 1 23 370 392 370 392 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF85-202 - 595 1.4e-81 264.6 114.7 9 15 4.7e-08 3e-05 24.2 2.8 1 23 398 420 398 420 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF85-202 - 595 1.4e-81 264.6 114.7 10 15 4.9e-07 0.00032 21.0 1.3 1 23 426 448 426 448 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF85-202 - 595 1.4e-81 264.6 114.7 11 15 6.6e-09 4.2e-06 26.9 1.3 1 23 454 476 454 476 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF85-202 - 595 1.4e-81 264.6 114.7 12 15 1.1e-05 0.0071 16.8 0.1 1 23 482 504 482 504 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF85-202 - 595 1.4e-81 264.6 114.7 13 15 2.1e-08 1.3e-05 25.3 1.1 1 23 510 532 510 532 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF85-202 - 595 1.4e-81 264.6 114.7 14 15 1.2e-09 7.9e-07 29.2 0.7 1 23 538 560 538 560 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF85-202 - 595 1.4e-81 264.6 114.7 15 15 3.3e-05 0.021 15.2 0.3 1 23 566 588 566 588 0.96 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZNF85-202 - 595 2.5e-40 133.6 109.8 1 15 0.0019 1.2 10.1 2.1 1 23 174 196 174 197 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF85-202 - 595 2.5e-40 133.6 109.8 2 15 0.00033 0.21 12.5 0.7 1 23 202 224 202 225 0.91 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF85-202 - 595 2.5e-40 133.6 109.8 3 15 9.5e-06 0.0061 17.3 0.5 1 23 230 252 230 253 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF85-202 - 595 2.5e-40 133.6 109.8 4 15 2.3e-05 0.015 16.1 0.7 1 23 258 280 258 281 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF85-202 - 595 2.5e-40 133.6 109.8 5 15 9.5e-06 0.0061 17.3 1.1 1 23 286 308 286 309 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF85-202 - 595 2.5e-40 133.6 109.8 6 15 3.8e-05 0.024 15.4 0.4 1 23 314 336 314 337 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF85-202 - 595 2.5e-40 133.6 109.8 7 15 0.0002 0.13 13.2 1.1 1 23 342 364 342 365 0.91 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF85-202 - 595 2.5e-40 133.6 109.8 8 15 0.0026 1.7 9.7 3.2 1 23 370 392 370 393 0.91 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF85-202 - 595 2.5e-40 133.6 109.8 9 15 0.0002 0.13 13.2 2.1 1 23 398 420 398 421 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF85-202 - 595 2.5e-40 133.6 109.8 10 15 0.00018 0.11 13.3 1.3 1 23 426 448 426 449 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF85-202 - 595 2.5e-40 133.6 109.8 11 15 7.6e-06 0.0049 17.6 1.1 1 23 454 476 454 477 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF85-202 - 595 2.5e-40 133.6 109.8 12 15 0.0069 4.4 8.4 0.2 1 23 482 504 482 505 0.83 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF85-202 - 595 2.5e-40 133.6 109.8 13 15 1.3e-05 0.0084 16.9 1.0 1 23 510 532 510 533 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF85-202 - 595 2.5e-40 133.6 109.8 14 15 3.3e-05 0.021 15.6 0.5 1 23 538 560 538 561 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF85-202 - 595 2.5e-40 133.6 109.8 15 15 0.0064 4.1 8.5 0.5 1 23 566 588 566 589 0.85 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF85-202 - 595 1.5e-30 104.6 121.9 1 15 5e-05 0.032 14.2 1.8 2 24 174 196 174 199 0.92 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF85-202 - 595 1.5e-30 104.6 121.9 2 15 0.0017 1.1 9.4 1.0 2 24 202 224 201 227 0.89 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF85-202 - 595 1.5e-30 104.6 121.9 3 15 1.7e-05 0.011 15.7 1.1 2 24 230 252 230 255 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF85-202 - 595 1.5e-30 104.6 121.9 4 15 2.9e-06 0.0019 18.2 0.7 2 24 258 280 258 283 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF85-202 - 595 1.5e-30 104.6 121.9 5 15 1.7e-05 0.011 15.8 1.3 2 24 286 308 286 311 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF85-202 - 595 1.5e-30 104.6 121.9 6 15 6.1e-05 0.039 14.0 0.8 2 24 314 336 314 339 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF85-202 - 595 1.5e-30 104.6 121.9 7 15 0.0065 4.1 7.5 1.0 2 12 342 352 342 361 0.85 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF85-202 - 595 1.5e-30 104.6 121.9 8 15 0.003 1.9 8.6 3.6 2 24 370 392 370 395 0.92 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF85-202 - 595 1.5e-30 104.6 121.9 9 15 0.00087 0.56 10.3 2.8 2 24 398 420 398 423 0.87 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF85-202 - 595 1.5e-30 104.6 121.9 10 15 0.00025 0.16 12.0 2.4 2 24 426 448 426 451 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF85-202 - 595 1.5e-30 104.6 121.9 11 15 2.9e-05 0.019 15.0 2.6 2 25 454 477 454 479 0.95 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF85-202 - 595 1.5e-30 104.6 121.9 12 15 0.02 13 5.9 0.3 2 12 482 492 482 493 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF85-202 - 595 1.5e-30 104.6 121.9 13 15 0.00065 0.42 10.7 2.4 2 24 510 532 510 535 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF85-202 - 595 1.5e-30 104.6 121.9 14 15 0.00012 0.074 13.1 0.9 2 24 538 560 538 563 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF85-202 - 595 1.5e-30 104.6 121.9 15 15 0.00095 0.61 10.2 0.4 2 24 566 588 566 591 0.91 C2H2-type zinc finger KRAB PF01352.27 42 ZNF85-202 - 595 9.2e-24 82.8 0.1 1 1 2.4e-26 1.6e-23 82.1 0.1 1 42 3 44 3 44 0.98 KRAB box XPA_N PF01286.18 32 ZNF85-202 - 595 1.2e-23 82.9 69.4 1 15 0.12 75 3.5 0.7 3 12 175 184 173 192 0.85 XPA protein N-terminal XPA_N PF01286.18 32 ZNF85-202 - 595 1.2e-23 82.9 69.4 2 15 0.0046 3 8.0 0.2 3 14 203 214 202 219 0.87 XPA protein N-terminal XPA_N PF01286.18 32 ZNF85-202 - 595 1.2e-23 82.9 69.4 3 15 0.0011 0.69 10.0 0.2 3 14 231 242 229 245 0.92 XPA protein N-terminal XPA_N PF01286.18 32 ZNF85-202 - 595 1.2e-23 82.9 69.4 4 15 0.0062 4 7.6 0.2 3 11 259 267 257 273 0.90 XPA protein N-terminal XPA_N PF01286.18 32 ZNF85-202 - 595 1.2e-23 82.9 69.4 5 15 0.0026 1.7 8.8 0.1 3 14 287 298 285 304 0.86 XPA protein N-terminal XPA_N PF01286.18 32 ZNF85-202 - 595 1.2e-23 82.9 69.4 6 15 0.00051 0.33 11.0 0.2 3 14 315 326 313 332 0.88 XPA protein N-terminal XPA_N PF01286.18 32 ZNF85-202 - 595 1.2e-23 82.9 69.4 7 15 0.0017 1.1 9.4 0.0 3 19 343 359 341 362 0.84 XPA protein N-terminal XPA_N PF01286.18 32 ZNF85-202 - 595 1.2e-23 82.9 69.4 8 15 0.019 12 6.0 0.1 3 12 371 380 369 387 0.89 XPA protein N-terminal XPA_N PF01286.18 32 ZNF85-202 - 595 1.2e-23 82.9 69.4 9 15 0.0017 1.1 9.3 0.2 3 14 399 410 397 416 0.87 XPA protein N-terminal XPA_N PF01286.18 32 ZNF85-202 - 595 1.2e-23 82.9 69.4 10 15 0.0035 2.3 8.4 0.4 3 14 427 438 425 444 0.86 XPA protein N-terminal XPA_N PF01286.18 32 ZNF85-202 - 595 1.2e-23 82.9 69.4 11 15 0.0033 2.1 8.4 0.1 3 14 455 466 453 471 0.91 XPA protein N-terminal XPA_N PF01286.18 32 ZNF85-202 - 595 1.2e-23 82.9 69.4 12 15 0.012 7.6 6.7 0.2 3 12 483 492 481 493 0.89 XPA protein N-terminal XPA_N PF01286.18 32 ZNF85-202 - 595 1.2e-23 82.9 69.4 13 15 0.00078 0.5 10.5 0.2 3 14 511 522 509 528 0.86 XPA protein N-terminal XPA_N PF01286.18 32 ZNF85-202 - 595 1.2e-23 82.9 69.4 14 15 0.001 0.67 10.1 0.2 3 14 539 550 537 555 0.90 XPA protein N-terminal XPA_N PF01286.18 32 ZNF85-202 - 595 1.2e-23 82.9 69.4 15 15 0.0036 2.3 8.3 0.2 3 14 567 578 565 585 0.83 XPA protein N-terminal zf_UBZ PF18439.1 32 ZNF85-202 - 595 3.5e-18 64.9 72.9 1 16 1.1 7e+02 -0.1 0.0 24 29 81 86 81 87 0.96 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF85-202 - 595 3.5e-18 64.9 72.9 2 16 0.023 15 5.3 0.4 3 20 174 192 172 193 0.77 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF85-202 - 595 3.5e-18 64.9 72.9 3 16 0.008 5.1 6.8 0.1 2 13 201 212 200 221 0.80 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF85-202 - 595 3.5e-18 64.9 72.9 4 16 0.005 3.2 7.4 0.2 3 15 230 242 228 249 0.81 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF85-202 - 595 3.5e-18 64.9 72.9 5 16 0.0027 1.7 8.3 0.1 3 20 258 276 256 277 0.78 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF85-202 - 595 3.5e-18 64.9 72.9 6 16 0.0077 4.9 6.8 0.1 3 20 286 304 284 305 0.82 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF85-202 - 595 3.5e-18 64.9 72.9 7 16 0.0011 0.69 9.6 0.2 3 20 314 332 312 333 0.88 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF85-202 - 595 3.5e-18 64.9 72.9 8 16 0.0045 2.9 7.6 0.2 3 20 342 360 340 361 0.84 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF85-202 - 595 3.5e-18 64.9 72.9 9 16 0.006 3.9 7.2 0.4 3 17 370 385 368 389 0.77 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF85-202 - 595 3.5e-18 64.9 72.9 10 16 0.0054 3.5 7.3 0.3 3 20 398 416 396 417 0.81 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF85-202 - 595 3.5e-18 64.9 72.9 11 16 0.0018 1.1 8.9 0.6 3 20 426 444 424 445 0.93 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF85-202 - 595 3.5e-18 64.9 72.9 12 16 0.0065 4.2 7.1 0.2 3 16 454 468 452 473 0.78 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF85-202 - 595 3.5e-18 64.9 72.9 13 16 0.022 14 5.3 0.2 3 12 482 491 480 496 0.87 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF85-202 - 595 3.5e-18 64.9 72.9 14 16 0.0017 1.1 8.9 0.2 3 20 510 528 508 529 0.82 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF85-202 - 595 3.5e-18 64.9 72.9 15 16 0.0012 0.79 9.4 0.2 3 20 538 556 536 557 0.80 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF85-202 - 595 3.5e-18 64.9 72.9 16 16 0.028 18 5.0 0.1 3 13 566 576 564 582 0.85 Ubiquitin-Binding Zinc Finger Zn-ribbon_8 PF09723.10 40 ZNF85-202 - 595 1.4e-17 63.5 93.0 1 15 0.037 24 5.2 0.3 6 15 174 183 173 193 0.88 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF85-202 - 595 1.4e-17 63.5 93.0 2 15 0.00011 0.069 13.3 5.1 6 35 202 238 201 242 0.89 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF85-202 - 595 1.4e-17 63.5 93.0 3 15 8.7e-05 0.056 13.6 6.6 6 38 230 269 228 270 0.89 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF85-202 - 595 1.4e-17 63.5 93.0 4 15 2e-05 0.013 15.6 5.2 6 38 258 297 256 298 0.79 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF85-202 - 595 1.4e-17 63.5 93.0 5 15 8.5e-05 0.055 13.6 5.7 6 36 286 323 284 326 0.88 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF85-202 - 595 1.4e-17 63.5 93.0 6 15 0.00029 0.19 11.9 5.6 6 35 314 350 313 353 0.85 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF85-202 - 595 1.4e-17 63.5 93.0 7 15 0.0033 2.1 8.5 0.3 6 17 342 353 340 364 0.83 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF85-202 - 595 1.4e-17 63.5 93.0 8 15 0.00014 0.088 12.9 5.5 6 35 370 406 369 409 0.80 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF85-202 - 595 1.4e-17 63.5 93.0 9 15 0.0025 1.6 8.9 6.0 6 34 398 433 397 436 0.80 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF85-202 - 595 1.4e-17 63.5 93.0 10 15 0.0031 2 8.6 7.0 6 35 426 462 425 465 0.83 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF85-202 - 595 1.4e-17 63.5 93.0 11 15 0.00038 0.24 11.5 7.5 6 34 454 489 453 492 0.82 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF85-202 - 595 1.4e-17 63.5 93.0 12 15 0.00015 0.094 12.8 5.7 6 35 482 518 480 521 0.92 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF85-202 - 595 1.4e-17 63.5 93.0 13 15 0.00011 0.07 13.3 5.9 6 35 510 546 508 549 0.86 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF85-202 - 595 1.4e-17 63.5 93.0 14 15 0.017 11 6.3 7.2 6 33 538 572 536 575 0.87 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF85-202 - 595 1.4e-17 63.5 93.0 15 15 0.032 21 5.4 0.7 6 16 566 576 565 586 0.84 Zinc ribbon domain zf-C2H2_jaz PF12171.8 27 ZNF85-202 - 595 1e-16 60.7 89.1 1 15 4.9 3.1e+03 -1.4 0.1 2 11 174 183 173 187 0.88 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF85-202 - 595 1e-16 60.7 89.1 2 15 0.0072 4.6 7.6 0.4 2 22 202 222 202 222 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF85-202 - 595 1e-16 60.7 89.1 3 15 0.0018 1.2 9.5 0.6 2 22 230 250 229 250 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF85-202 - 595 1e-16 60.7 89.1 4 15 0.0018 1.2 9.5 0.2 2 20 258 276 257 277 0.89 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF85-202 - 595 1e-16 60.7 89.1 5 15 7.3e-05 0.047 14.0 0.1 2 22 286 306 285 306 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF85-202 - 595 1e-16 60.7 89.1 6 15 0.0013 0.84 10.0 0.2 2 21 314 333 313 334 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF85-202 - 595 1e-16 60.7 89.1 7 15 0.38 2.4e+02 2.2 0.4 2 21 342 361 341 362 0.91 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF85-202 - 595 1e-16 60.7 89.1 8 15 4.9 3.1e+03 -1.4 1.4 2 20 370 388 369 389 0.74 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF85-202 - 595 1e-16 60.7 89.1 9 15 0.00014 0.091 13.1 0.5 2 21 398 417 397 418 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF85-202 - 595 1e-16 60.7 89.1 10 15 0.0025 1.6 9.1 1.6 2 22 426 446 425 446 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF85-202 - 595 1e-16 60.7 89.1 11 15 0.0051 3.3 8.1 1.5 2 24 454 476 453 476 0.95 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF85-202 - 595 1e-16 60.7 89.1 12 15 0.012 7.7 6.9 0.0 2 20 482 500 481 501 0.79 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF85-202 - 595 1e-16 60.7 89.1 13 15 0.003 1.9 8.8 0.6 2 22 510 530 509 530 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF85-202 - 595 1e-16 60.7 89.1 14 15 0.0016 1.1 9.7 0.2 2 22 538 558 537 558 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF85-202 - 595 1e-16 60.7 89.1 15 15 0.00032 0.21 11.9 0.3 2 21 566 585 565 586 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_11 PF16622.5 29 ZNF85-202 - 595 1.3e-08 34.4 51.4 1 16 1.5 9.6e+02 -0.3 0.0 19 27 64 72 62 74 0.84 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF85-202 - 595 1.3e-08 34.4 51.4 2 16 0.053 34 4.3 1.8 5 26 174 195 172 196 0.89 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF85-202 - 595 1.3e-08 34.4 51.4 3 16 0.0055 3.5 7.5 0.1 5 26 202 223 200 224 0.93 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF85-202 - 595 1.3e-08 34.4 51.4 4 16 0.042 27 4.6 0.0 5 26 230 251 227 252 0.85 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF85-202 - 595 1.3e-08 34.4 51.4 5 16 0.19 1.2e+02 2.5 0.1 5 15 258 268 255 280 0.75 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF85-202 - 595 1.3e-08 34.4 51.4 6 16 0.015 9.4 6.1 0.1 5 26 286 307 283 308 0.90 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF85-202 - 595 1.3e-08 34.4 51.4 7 16 0.1 66 3.4 0.1 5 24 314 333 311 336 0.76 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF85-202 - 595 1.3e-08 34.4 51.4 8 16 0.15 96 2.9 0.1 5 23 342 360 339 364 0.76 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF85-202 - 595 1.3e-08 34.4 51.4 9 16 0.39 2.5e+02 1.5 0.1 5 14 370 379 367 392 0.79 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF85-202 - 595 1.3e-08 34.4 51.4 10 16 0.007 4.5 7.1 0.2 5 26 398 419 395 420 0.90 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF85-202 - 595 1.3e-08 34.4 51.4 11 16 2.5 1.6e+03 -1.0 0.1 5 14 426 435 424 447 0.71 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF85-202 - 595 1.3e-08 34.4 51.4 12 16 0.068 44 4.0 0.1 6 23 455 472 452 474 0.92 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF85-202 - 595 1.3e-08 34.4 51.4 13 16 0.28 1.8e+02 2.0 0.0 5 14 482 491 478 504 0.76 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF85-202 - 595 1.3e-08 34.4 51.4 14 16 0.019 12 5.7 0.1 5 26 510 531 507 532 0.88 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF85-202 - 595 1.3e-08 34.4 51.4 15 16 0.03 19 5.1 0.1 7 26 540 559 537 560 0.92 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF85-202 - 595 1.3e-08 34.4 51.4 16 16 0.45 2.9e+02 1.4 0.0 5 26 566 587 563 588 0.86 zinc-finger C2H2-type zf-trcl PF13451.6 48 ZNF85-202 - 595 5.4e-08 32.6 70.9 1 13 0.074 48 4.0 0.5 3 14 172 183 170 184 0.89 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF85-202 - 595 5.4e-08 32.6 70.9 2 13 0.018 12 5.9 5.0 5 46 202 242 200 244 0.79 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF85-202 - 595 5.4e-08 32.6 70.9 3 13 0.033 21 5.1 0.2 3 14 256 267 254 271 0.89 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF85-202 - 595 5.4e-08 32.6 70.9 4 13 0.02 13 5.8 0.1 3 14 284 295 282 300 0.87 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF85-202 - 595 5.4e-08 32.6 70.9 5 13 0.037 23 5.0 0.2 3 14 312 323 304 328 0.73 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF85-202 - 595 5.4e-08 32.6 70.9 6 13 0.02 13 5.8 0.1 3 14 340 351 338 356 0.82 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF85-202 - 595 5.4e-08 32.6 70.9 7 13 0.043 27 4.7 0.1 3 15 368 380 366 384 0.84 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF85-202 - 595 5.4e-08 32.6 70.9 8 13 0.024 15 5.5 5.3 3 46 396 438 394 440 0.77 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF85-202 - 595 5.4e-08 32.6 70.9 9 13 0.16 1e+02 2.9 0.1 3 14 452 463 450 468 0.85 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF85-202 - 595 5.4e-08 32.6 70.9 10 13 0.01 6.6 6.7 0.1 2 16 479 493 478 496 0.87 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF85-202 - 595 5.4e-08 32.6 70.9 11 13 0.043 28 4.7 0.1 3 14 508 519 506 524 0.84 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF85-202 - 595 5.4e-08 32.6 70.9 12 13 0.024 15 5.5 0.1 3 14 536 547 534 552 0.89 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF85-202 - 595 5.4e-08 32.6 70.9 13 13 0.024 15 5.5 0.2 3 17 564 578 562 580 0.87 Probable zinc-ribbon domain zinc_ribbon_15 PF17032.5 86 ZNF85-202 - 595 9e-08 32.8 79.8 1 8 0.025 16 6.3 5.9 33 76 169 212 135 220 0.83 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF85-202 - 595 9e-08 32.8 79.8 2 8 0.00076 0.49 11.2 3.3 32 76 224 268 217 273 0.86 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF85-202 - 595 9e-08 32.8 79.8 3 8 0.00064 0.41 11.4 3.1 35 79 283 327 268 333 0.84 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF85-202 - 595 9e-08 32.8 79.8 4 8 0.0022 1.4 9.7 2.5 35 76 339 380 329 385 0.83 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF85-202 - 595 9e-08 32.8 79.8 5 8 0.0019 1.2 9.9 4.2 34 79 394 439 381 444 0.83 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF85-202 - 595 9e-08 32.8 79.8 6 8 0.0011 0.69 10.7 4.6 31 73 447 489 441 495 0.88 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF85-202 - 595 9e-08 32.8 79.8 7 8 0.00024 0.16 12.8 3.8 34 79 506 551 495 556 0.84 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF85-202 - 595 9e-08 32.8 79.8 8 8 0.0019 1.2 9.9 3.5 31 75 531 575 528 580 0.86 zinc-ribbon family # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF85-202.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF85-202.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF85-202.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF85-202.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF85-202.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:15:26 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZNF85-203 - 530 4.3e-127 409.4 144.0 1 17 2.7 1.8e+03 -0.4 0.0 10 19 76 85 76 89 0.80 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF85-203 - 530 4.3e-127 409.4 144.0 2 17 6.4e-09 4.3e-06 26.9 3.5 3 24 97 118 95 119 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF85-203 - 530 4.3e-127 409.4 144.0 3 17 6.4e-08 4.3e-05 23.8 0.6 2 25 124 147 124 147 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF85-203 - 530 4.3e-127 409.4 144.0 4 17 5.8e-12 3.9e-09 36.5 1.5 2 25 152 175 151 176 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF85-203 - 530 4.3e-127 409.4 144.0 5 17 1.2e-11 8.2e-09 35.5 1.9 1 25 179 203 179 204 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF85-203 - 530 4.3e-127 409.4 144.0 6 17 1.6e-10 1.1e-07 32.0 1.4 2 25 208 231 207 232 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF85-203 - 530 4.3e-127 409.4 144.0 7 17 2.7e-11 1.8e-08 34.4 1.8 2 26 236 260 235 260 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF85-203 - 530 4.3e-127 409.4 144.0 8 17 2.8e-11 1.9e-08 34.4 1.3 1 25 263 287 263 288 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF85-203 - 530 4.3e-127 409.4 144.0 9 17 9.1e-10 6.1e-07 29.6 3.7 1 26 291 316 291 316 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF85-203 - 530 4.3e-127 409.4 144.0 10 17 2e-10 1.3e-07 31.7 5.2 1 26 319 344 319 344 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF85-203 - 530 4.3e-127 409.4 144.0 11 17 1.1e-10 7.3e-08 32.5 1.8 2 25 348 371 347 372 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF85-203 - 530 4.3e-127 409.4 144.0 12 17 1.6e-11 1e-08 35.2 1.7 2 25 376 399 375 400 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF85-203 - 530 4.3e-127 409.4 144.0 13 17 1.3e-10 8.5e-08 32.3 3.5 1 25 403 427 403 427 0.98 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF85-203 - 530 4.3e-127 409.4 144.0 14 17 2.8e-10 1.9e-07 31.2 0.4 3 25 433 455 432 456 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF85-203 - 530 4.3e-127 409.4 144.0 15 17 1.2e-11 8.1e-09 35.5 1.9 2 25 460 483 459 484 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF85-203 - 530 4.3e-127 409.4 144.0 16 17 1.4e-12 9.3e-10 38.5 2.4 1 25 487 511 487 511 0.98 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF85-203 - 530 4.3e-127 409.4 144.0 17 17 0.026 17 6.0 0.2 2 13 516 527 516 529 0.93 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZNF85-203 - 530 2e-82 267.3 114.7 1 15 4.3e-05 0.029 14.8 2.5 1 23 109 131 109 131 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF85-203 - 530 2e-82 267.3 114.7 2 15 5.7e-07 0.00038 20.8 0.6 1 23 137 159 137 159 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF85-203 - 530 2e-82 267.3 114.7 3 15 3.7e-09 2.5e-06 27.6 0.5 1 23 165 187 165 187 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF85-203 - 530 2e-82 267.3 114.7 4 15 1.4e-07 9.5e-05 22.6 1.2 1 23 193 215 193 215 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF85-203 - 530 2e-82 267.3 114.7 5 15 8.6e-09 5.7e-06 26.5 1.7 1 23 221 243 221 243 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF85-203 - 530 2e-82 267.3 114.7 6 15 7.2e-09 4.8e-06 26.7 0.5 1 23 249 271 249 271 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF85-203 - 530 2e-82 267.3 114.7 7 15 2.8e-07 0.00019 21.7 1.3 1 23 277 299 277 299 0.94 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF85-203 - 530 2e-82 267.3 114.7 8 15 1.4e-06 0.00095 19.5 4.4 1 23 305 327 305 327 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF85-203 - 530 2e-82 267.3 114.7 9 15 4e-08 2.6e-05 24.4 2.8 1 23 333 355 333 355 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF85-203 - 530 2e-82 267.3 114.7 10 15 4.1e-07 0.00028 21.2 1.3 1 23 361 383 361 383 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF85-203 - 530 2e-82 267.3 114.7 11 15 5.6e-09 3.7e-06 27.1 1.3 1 23 389 411 389 411 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF85-203 - 530 2e-82 267.3 114.7 12 15 9.3e-06 0.0062 16.9 0.1 1 23 417 439 417 439 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF85-203 - 530 2e-82 267.3 114.7 13 15 1.8e-08 1.2e-05 25.5 1.1 1 23 445 467 445 467 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF85-203 - 530 2e-82 267.3 114.7 14 15 1e-09 6.9e-07 29.4 0.7 1 23 473 495 473 495 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF85-203 - 530 2e-82 267.3 114.7 15 15 2.8e-05 0.019 15.4 0.3 1 23 501 523 501 523 0.96 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZNF85-203 - 530 3.7e-41 136.2 109.8 1 15 0.0016 1.1 10.3 2.1 1 23 109 131 109 132 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF85-203 - 530 3.7e-41 136.2 109.8 2 15 0.00028 0.18 12.7 0.7 1 23 137 159 137 160 0.91 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF85-203 - 530 3.7e-41 136.2 109.8 3 15 8e-06 0.0053 17.5 0.5 1 23 165 187 165 188 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF85-203 - 530 3.7e-41 136.2 109.8 4 15 2e-05 0.013 16.3 0.7 1 23 193 215 193 216 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF85-203 - 530 3.7e-41 136.2 109.8 5 15 8e-06 0.0053 17.5 1.1 1 23 221 243 221 244 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF85-203 - 530 3.7e-41 136.2 109.8 6 15 3.2e-05 0.021 15.6 0.4 1 23 249 271 249 272 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF85-203 - 530 3.7e-41 136.2 109.8 7 15 0.00017 0.11 13.4 1.1 1 23 277 299 277 300 0.91 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF85-203 - 530 3.7e-41 136.2 109.8 8 15 0.0022 1.4 9.9 3.2 1 23 305 327 305 328 0.91 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF85-203 - 530 3.7e-41 136.2 109.8 9 15 0.00016 0.11 13.4 2.1 1 23 333 355 333 356 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF85-203 - 530 3.7e-41 136.2 109.8 10 15 0.00015 0.1 13.5 1.3 1 23 361 383 361 384 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF85-203 - 530 3.7e-41 136.2 109.8 11 15 6.4e-06 0.0042 17.8 1.1 1 23 389 411 389 412 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF85-203 - 530 3.7e-41 136.2 109.8 12 15 0.0058 3.9 8.6 0.2 1 23 417 439 417 440 0.83 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF85-203 - 530 3.7e-41 136.2 109.8 13 15 1.1e-05 0.0073 17.1 1.0 1 23 445 467 445 468 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF85-203 - 530 3.7e-41 136.2 109.8 14 15 2.8e-05 0.018 15.8 0.5 1 23 473 495 473 496 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF85-203 - 530 3.7e-41 136.2 109.8 15 15 0.0054 3.6 8.7 0.5 1 23 501 523 501 524 0.85 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF85-203 - 530 2e-31 107.3 121.9 1 15 4.2e-05 0.028 14.4 1.8 2 24 109 131 109 134 0.92 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF85-203 - 530 2e-31 107.3 121.9 2 15 0.0014 0.95 9.5 1.0 2 24 137 159 136 162 0.89 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF85-203 - 530 2e-31 107.3 121.9 3 15 1.5e-05 0.0096 15.9 1.1 2 24 165 187 165 190 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF85-203 - 530 2e-31 107.3 121.9 4 15 2.5e-06 0.0016 18.3 0.7 2 24 193 215 193 218 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF85-203 - 530 2e-31 107.3 121.9 5 15 1.4e-05 0.0092 16.0 1.3 2 24 221 243 221 246 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF85-203 - 530 2e-31 107.3 121.9 6 15 5.1e-05 0.034 14.1 0.8 2 24 249 271 249 274 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF85-203 - 530 2e-31 107.3 121.9 7 15 0.0055 3.6 7.7 1.0 2 12 277 287 277 296 0.85 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF85-203 - 530 2e-31 107.3 121.9 8 15 0.0025 1.7 8.8 3.6 2 24 305 327 305 330 0.92 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF85-203 - 530 2e-31 107.3 121.9 9 15 0.00073 0.49 10.5 2.8 2 24 333 355 333 358 0.87 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF85-203 - 530 2e-31 107.3 121.9 10 15 0.00021 0.14 12.2 2.4 2 24 361 383 361 386 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF85-203 - 530 2e-31 107.3 121.9 11 15 2.5e-05 0.016 15.2 2.6 2 25 389 412 389 414 0.95 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF85-203 - 530 2e-31 107.3 121.9 12 15 0.017 12 6.1 0.3 2 12 417 427 417 428 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF85-203 - 530 2e-31 107.3 121.9 13 15 0.00055 0.36 10.9 2.4 2 24 445 467 445 470 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF85-203 - 530 2e-31 107.3 121.9 14 15 9.7e-05 0.064 13.3 0.9 2 24 473 495 473 498 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF85-203 - 530 2e-31 107.3 121.9 15 15 0.0008 0.53 10.4 0.4 2 24 501 523 501 526 0.91 C2H2-type zinc finger XPA_N PF01286.18 32 ZNF85-203 - 530 1.8e-24 85.5 69.4 1 15 0.099 66 3.7 0.7 3 12 110 119 108 127 0.85 XPA protein N-terminal XPA_N PF01286.18 32 ZNF85-203 - 530 1.8e-24 85.5 69.4 2 15 0.0039 2.6 8.2 0.2 3 14 138 149 137 154 0.87 XPA protein N-terminal XPA_N PF01286.18 32 ZNF85-203 - 530 1.8e-24 85.5 69.4 3 15 0.00092 0.61 10.2 0.2 3 14 166 177 164 180 0.92 XPA protein N-terminal XPA_N PF01286.18 32 ZNF85-203 - 530 1.8e-24 85.5 69.4 4 15 0.0053 3.5 7.7 0.2 3 11 194 202 192 208 0.90 XPA protein N-terminal XPA_N PF01286.18 32 ZNF85-203 - 530 1.8e-24 85.5 69.4 5 15 0.0022 1.5 9.0 0.1 3 14 222 233 220 239 0.86 XPA protein N-terminal XPA_N PF01286.18 32 ZNF85-203 - 530 1.8e-24 85.5 69.4 6 15 0.00043 0.29 11.2 0.2 3 14 250 261 248 267 0.88 XPA protein N-terminal XPA_N PF01286.18 32 ZNF85-203 - 530 1.8e-24 85.5 69.4 7 15 0.0014 0.94 9.6 0.0 3 19 278 294 276 297 0.84 XPA protein N-terminal XPA_N PF01286.18 32 ZNF85-203 - 530 1.8e-24 85.5 69.4 8 15 0.016 11 6.2 0.1 3 12 306 315 304 322 0.89 XPA protein N-terminal XPA_N PF01286.18 32 ZNF85-203 - 530 1.8e-24 85.5 69.4 9 15 0.0015 0.97 9.5 0.2 3 14 334 345 332 351 0.87 XPA protein N-terminal XPA_N PF01286.18 32 ZNF85-203 - 530 1.8e-24 85.5 69.4 10 15 0.003 2 8.5 0.4 3 14 362 373 360 379 0.86 XPA protein N-terminal XPA_N PF01286.18 32 ZNF85-203 - 530 1.8e-24 85.5 69.4 11 15 0.0028 1.9 8.6 0.1 3 14 390 401 388 406 0.91 XPA protein N-terminal XPA_N PF01286.18 32 ZNF85-203 - 530 1.8e-24 85.5 69.4 12 15 0.01 6.7 6.8 0.2 3 12 418 427 416 428 0.89 XPA protein N-terminal XPA_N PF01286.18 32 ZNF85-203 - 530 1.8e-24 85.5 69.4 13 15 0.00066 0.44 10.6 0.2 3 14 446 457 444 463 0.86 XPA protein N-terminal XPA_N PF01286.18 32 ZNF85-203 - 530 1.8e-24 85.5 69.4 14 15 0.00088 0.58 10.2 0.2 3 14 474 485 472 490 0.90 XPA protein N-terminal XPA_N PF01286.18 32 ZNF85-203 - 530 1.8e-24 85.5 69.4 15 15 0.003 2 8.5 0.2 3 14 502 513 500 520 0.83 XPA protein N-terminal zf_UBZ PF18439.1 32 ZNF85-203 - 530 4.6e-19 67.7 72.9 1 16 0.93 6.2e+02 0.1 0.0 24 29 16 21 16 22 0.96 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF85-203 - 530 4.6e-19 67.7 72.9 2 16 0.02 13 5.5 0.4 3 20 109 127 107 128 0.77 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF85-203 - 530 4.6e-19 67.7 72.9 3 16 0.0068 4.5 7.0 0.1 2 13 136 147 135 156 0.80 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF85-203 - 530 4.6e-19 67.7 72.9 4 16 0.0043 2.8 7.6 0.2 3 15 165 177 163 184 0.81 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF85-203 - 530 4.6e-19 67.7 72.9 5 16 0.0022 1.5 8.5 0.1 3 20 193 211 191 212 0.78 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF85-203 - 530 4.6e-19 67.7 72.9 6 16 0.0065 4.3 7.0 0.1 3 20 221 239 219 240 0.82 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF85-203 - 530 4.6e-19 67.7 72.9 7 16 0.00091 0.61 9.7 0.2 3 20 249 267 247 268 0.88 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF85-203 - 530 4.6e-19 67.7 72.9 8 16 0.0038 2.5 7.7 0.2 3 21 277 296 275 296 0.84 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF85-203 - 530 4.6e-19 67.7 72.9 9 16 0.0051 3.4 7.3 0.4 3 17 305 320 303 324 0.77 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF85-203 - 530 4.6e-19 67.7 72.9 10 16 0.0046 3 7.5 0.3 3 20 333 351 331 352 0.81 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF85-203 - 530 4.6e-19 67.7 72.9 11 16 0.0015 0.98 9.1 0.6 3 20 361 379 359 380 0.93 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF85-203 - 530 4.6e-19 67.7 72.9 12 16 0.0055 3.7 7.2 0.2 3 16 389 403 387 408 0.78 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF85-203 - 530 4.6e-19 67.7 72.9 13 16 0.019 13 5.5 0.2 3 12 417 426 415 431 0.87 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF85-203 - 530 4.6e-19 67.7 72.9 14 16 0.0014 0.95 9.1 0.2 3 20 445 463 443 464 0.82 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF85-203 - 530 4.6e-19 67.7 72.9 15 16 0.001 0.69 9.6 0.2 3 20 473 491 471 492 0.80 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF85-203 - 530 4.6e-19 67.7 72.9 16 16 0.023 16 5.2 0.1 3 13 501 511 499 517 0.85 Ubiquitin-Binding Zinc Finger Zn-ribbon_8 PF09723.10 40 ZNF85-203 - 530 2.4e-18 65.9 92.7 1 15 0.031 21 5.4 0.3 6 15 109 118 108 128 0.88 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF85-203 - 530 2.4e-18 65.9 92.7 2 15 9.8e-05 0.065 13.4 5.2 6 35 137 173 136 176 0.89 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF85-203 - 530 2.4e-18 65.9 92.7 3 15 7.1e-05 0.047 13.8 6.3 6 38 165 204 164 204 0.88 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF85-203 - 530 2.4e-18 65.9 92.7 4 15 1.4e-05 0.0095 16.0 5.0 6 38 193 232 191 233 0.79 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF85-203 - 530 2.4e-18 65.9 92.7 5 15 5.9e-05 0.039 14.1 5.4 6 36 221 258 220 261 0.88 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF85-203 - 530 2.4e-18 65.9 92.7 6 15 0.00024 0.16 12.1 5.7 6 35 249 285 247 288 0.86 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF85-203 - 530 2.4e-18 65.9 92.7 7 15 0.0029 1.9 8.7 0.4 6 17 277 288 276 299 0.82 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF85-203 - 530 2.4e-18 65.9 92.7 8 15 0.00011 0.075 13.2 5.4 6 35 305 341 304 343 0.80 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF85-203 - 530 2.4e-18 65.9 92.7 9 15 0.0036 2.4 8.4 6.1 6 33 333 367 332 368 0.80 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF85-203 - 530 2.4e-18 65.9 92.7 10 15 0.012 8.3 6.6 0.9 6 23 361 378 360 384 0.80 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF85-203 - 530 2.4e-18 65.9 92.7 11 15 0.00032 0.21 11.7 7.6 6 34 389 424 387 427 0.83 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF85-203 - 530 2.4e-18 65.9 92.7 12 15 0.00013 0.088 12.9 5.8 6 35 417 453 415 456 0.92 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF85-203 - 530 2.4e-18 65.9 92.7 13 15 8e-05 0.053 13.6 5.7 6 35 445 481 444 484 0.85 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF85-203 - 530 2.4e-18 65.9 92.7 14 15 0.0099 6.6 6.9 7.0 6 34 473 508 472 511 0.86 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF85-203 - 530 2.4e-18 65.9 92.7 15 15 0.027 18 5.6 0.7 6 16 501 511 500 521 0.84 Zinc ribbon domain zf-C2H2_jaz PF12171.8 27 ZNF85-203 - 530 7.8e-17 61.1 91.4 1 15 5.3 3.6e+03 -1.6 0.5 2 11 109 118 108 125 0.89 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF85-203 - 530 7.8e-17 61.1 91.4 2 15 0.0061 4.1 7.8 0.4 2 22 137 157 137 157 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF85-203 - 530 7.8e-17 61.1 91.4 3 15 0.0016 1 9.7 0.6 2 22 165 185 164 185 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF85-203 - 530 7.8e-17 61.1 91.4 4 15 0.0015 1 9.7 0.2 2 20 193 211 192 212 0.89 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF85-203 - 530 7.8e-17 61.1 91.4 5 15 6.1e-05 0.041 14.2 0.1 2 22 221 241 220 241 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF85-203 - 530 7.8e-17 61.1 91.4 6 15 0.0011 0.73 10.2 0.2 2 21 249 268 248 269 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF85-203 - 530 7.8e-17 61.1 91.4 7 15 0.32 2.1e+02 2.4 0.4 2 21 277 296 276 297 0.91 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF85-203 - 530 7.8e-17 61.1 91.4 8 15 4.1 2.8e+03 -1.2 1.4 2 20 305 323 304 324 0.74 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF85-203 - 530 7.8e-17 61.1 91.4 9 15 0.00012 0.08 13.3 0.5 2 21 333 352 332 353 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF85-203 - 530 7.8e-17 61.1 91.4 10 15 0.0021 1.4 9.3 1.6 2 22 361 381 360 381 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF85-203 - 530 7.8e-17 61.1 91.4 11 15 0.0043 2.8 8.3 1.5 2 24 389 411 388 411 0.95 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF85-203 - 530 7.8e-17 61.1 91.4 12 15 0.01 6.7 7.1 0.0 2 20 417 435 416 436 0.79 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF85-203 - 530 7.8e-17 61.1 91.4 13 15 0.0026 1.7 9.0 0.6 2 22 445 465 444 465 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF85-203 - 530 7.8e-17 61.1 91.4 14 15 0.0014 0.92 9.9 0.2 2 22 473 493 472 493 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF85-203 - 530 7.8e-17 61.1 91.4 15 15 0.00027 0.18 12.1 0.3 2 21 501 520 500 521 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_11 PF16622.5 29 ZNF85-203 - 530 1.4e-09 37.5 49.1 1 15 0.045 30 4.5 1.8 5 26 109 130 107 131 0.89 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF85-203 - 530 1.4e-09 37.5 49.1 2 15 0.0046 3.1 7.7 0.1 5 26 137 158 135 159 0.93 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF85-203 - 530 1.4e-09 37.5 49.1 3 15 0.036 24 4.8 0.0 5 26 165 186 162 187 0.85 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF85-203 - 530 1.4e-09 37.5 49.1 4 15 0.16 1.1e+02 2.7 0.1 5 15 193 203 190 215 0.75 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF85-203 - 530 1.4e-09 37.5 49.1 5 15 0.012 8.2 6.3 0.1 5 26 221 242 218 243 0.90 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF85-203 - 530 1.4e-09 37.5 49.1 6 15 0.087 58 3.6 0.1 5 24 249 268 246 271 0.76 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF85-203 - 530 1.4e-09 37.5 49.1 7 15 0.13 84 3.0 0.1 5 23 277 295 274 299 0.76 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF85-203 - 530 1.4e-09 37.5 49.1 8 15 0.33 2.2e+02 1.7 0.1 5 14 305 314 302 327 0.79 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF85-203 - 530 1.4e-09 37.5 49.1 9 15 0.0059 3.9 7.3 0.2 5 26 333 354 330 355 0.90 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF85-203 - 530 1.4e-09 37.5 49.1 10 15 2.1 1.4e+03 -0.9 0.1 5 14 361 370 359 382 0.71 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF85-203 - 530 1.4e-09 37.5 49.1 11 15 0.058 38 4.1 0.1 6 23 390 407 387 409 0.92 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF85-203 - 530 1.4e-09 37.5 49.1 12 15 0.24 1.6e+02 2.2 0.0 5 14 417 426 413 439 0.76 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF85-203 - 530 1.4e-09 37.5 49.1 13 15 0.016 11 5.9 0.1 5 26 445 466 442 467 0.88 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF85-203 - 530 1.4e-09 37.5 49.1 14 15 0.025 17 5.3 0.1 7 26 475 494 472 495 0.92 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF85-203 - 530 1.4e-09 37.5 49.1 15 15 0.38 2.5e+02 1.5 0.0 5 26 501 522 498 523 0.86 zinc-finger C2H2-type zf-trcl PF13451.6 48 ZNF85-203 - 530 1e-08 35.0 71.0 1 13 0.063 42 4.1 0.5 3 14 107 118 105 119 0.89 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF85-203 - 530 1e-08 35.0 71.0 2 13 0.016 10 6.1 5.0 5 46 137 177 135 179 0.79 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF85-203 - 530 1e-08 35.0 71.0 3 13 0.028 18 5.3 0.2 3 14 191 202 189 206 0.89 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF85-203 - 530 1e-08 35.0 71.0 4 13 0.017 11 6.0 0.1 3 14 219 230 217 235 0.87 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF85-203 - 530 1e-08 35.0 71.0 5 13 0.032 21 5.1 0.2 3 14 247 258 240 263 0.73 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF85-203 - 530 1e-08 35.0 71.0 6 13 0.017 11 6.0 0.1 3 14 275 286 273 291 0.82 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF85-203 - 530 1e-08 35.0 71.0 7 13 0.036 24 4.9 0.1 3 15 303 315 301 319 0.84 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF85-203 - 530 1e-08 35.0 71.0 8 13 0.021 14 5.7 5.4 3 46 331 373 329 375 0.77 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF85-203 - 530 1e-08 35.0 71.0 9 13 0.14 92 3.0 0.1 3 14 387 398 385 403 0.85 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF85-203 - 530 1e-08 35.0 71.0 10 13 0.0088 5.8 6.9 0.1 2 16 414 428 413 431 0.87 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF85-203 - 530 1e-08 35.0 71.0 11 13 0.036 24 4.9 0.1 3 14 443 454 441 459 0.84 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF85-203 - 530 1e-08 35.0 71.0 12 13 0.02 14 5.7 0.1 3 14 471 482 469 487 0.89 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF85-203 - 530 1e-08 35.0 71.0 13 13 0.02 14 5.7 0.2 3 17 499 513 497 515 0.87 Probable zinc-ribbon domain zinc_ribbon_15 PF17032.5 86 ZNF85-203 - 530 4e-08 33.9 80.1 1 8 0.029 19 6.1 6.3 33 76 104 147 70 155 0.83 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF85-203 - 530 4e-08 33.9 80.1 2 8 0.00061 0.4 11.4 3.2 32 76 159 203 154 208 0.86 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF85-203 - 530 4e-08 33.9 80.1 3 8 0.00052 0.35 11.7 3.0 35 79 218 262 205 268 0.85 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF85-203 - 530 4e-08 33.9 80.1 4 8 0.0017 1.1 10.0 2.4 35 76 274 315 264 320 0.83 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF85-203 - 530 4e-08 33.9 80.1 5 8 0.0017 1.1 10.0 4.4 34 79 329 374 315 379 0.83 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF85-203 - 530 4e-08 33.9 80.1 6 8 0.00074 0.49 11.2 4.4 31 73 382 424 376 431 0.88 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF85-203 - 530 4e-08 33.9 80.1 7 8 0.00021 0.14 12.9 3.8 34 79 441 486 430 491 0.84 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF85-203 - 530 4e-08 33.9 80.1 8 8 0.0018 1.2 9.9 3.8 31 75 466 510 463 516 0.86 zinc-ribbon family # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF85-203.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF85-203.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF85-203.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF85-203.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF85-203.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:15:27 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF85-204.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF85-204.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF85-204.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF85-204.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF85-204.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:15:27 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF85-205.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF85-205.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF85-205.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF85-205.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF85-205.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:15:28 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF85-206.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF85-206.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF85-206.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF85-206.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF85-206.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:15:28 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF85-207.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF85-207.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF85-207.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF85-207.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF85-207.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:15:28 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- KRAB PF01352.27 42 ZNF85-208 - 62 2e-25 88.1 0.1 1 1 1.3e-29 2.4e-25 87.9 0.1 1 42 3 44 3 44 0.98 KRAB box # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF85-208.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF85-208.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF85-208.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF85-208.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF85-208.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:15:29 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF85-209.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF85-209.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF85-209.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF85-209.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF85-209.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:15:29 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF85-210.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF85-210.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF85-210.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF85-210.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF85-210.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:15:29 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF85-211.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF85-211.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF85-211.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF85-211.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF85-211.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:15:30 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZNF85-212 - 536 5.4e-127 409.1 144.0 1 17 2.7 1.8e+03 -0.4 0.0 10 19 82 91 82 95 0.80 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF85-212 - 536 5.4e-127 409.1 144.0 2 17 6.3e-09 4.3e-06 26.9 3.5 3 24 103 124 101 125 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF85-212 - 536 5.4e-127 409.1 144.0 3 17 6.3e-08 4.3e-05 23.7 0.6 2 25 130 153 130 153 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF85-212 - 536 5.4e-127 409.1 144.0 4 17 5.7e-12 3.9e-09 36.5 1.5 2 25 158 181 157 182 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF85-212 - 536 5.4e-127 409.1 144.0 5 17 1.2e-11 8.3e-09 35.5 1.9 1 25 185 209 185 210 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF85-212 - 536 5.4e-127 409.1 144.0 6 17 1.6e-10 1.1e-07 32.0 1.4 2 25 214 237 213 238 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF85-212 - 536 5.4e-127 409.1 144.0 7 17 2.6e-11 1.8e-08 34.4 1.8 2 26 242 266 241 266 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF85-212 - 536 5.4e-127 409.1 144.0 8 17 2.8e-11 1.9e-08 34.3 1.3 1 25 269 293 269 294 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF85-212 - 536 5.4e-127 409.1 144.0 9 17 8.9e-10 6.1e-07 29.6 3.7 1 26 297 322 297 322 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF85-212 - 536 5.4e-127 409.1 144.0 10 17 1.9e-10 1.3e-07 31.7 5.2 1 26 325 350 325 350 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF85-212 - 536 5.4e-127 409.1 144.0 11 17 1.1e-10 7.4e-08 32.5 1.8 2 25 354 377 353 378 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF85-212 - 536 5.4e-127 409.1 144.0 12 17 1.5e-11 1.1e-08 35.2 1.7 2 25 382 405 381 406 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF85-212 - 536 5.4e-127 409.1 144.0 13 17 1.3e-10 8.7e-08 32.3 3.5 1 25 409 433 409 433 0.98 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF85-212 - 536 5.4e-127 409.1 144.0 14 17 2.7e-10 1.9e-07 31.2 0.4 3 25 439 461 438 462 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF85-212 - 536 5.4e-127 409.1 144.0 15 17 1.2e-11 8.2e-09 35.5 1.9 2 25 466 489 465 490 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF85-212 - 536 5.4e-127 409.1 144.0 16 17 1.4e-12 9.4e-10 38.5 2.4 1 25 493 517 493 517 0.98 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF85-212 - 536 5.4e-127 409.1 144.0 17 17 0.025 18 6.0 0.2 2 13 522 533 522 535 0.93 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZNF85-212 - 536 2.4e-82 267.0 114.7 1 15 4.2e-05 0.029 14.8 2.5 1 23 115 137 115 137 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF85-212 - 536 2.4e-82 267.0 114.7 2 15 5.6e-07 0.00038 20.7 0.6 1 23 143 165 143 165 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF85-212 - 536 2.4e-82 267.0 114.7 3 15 3.6e-09 2.5e-06 27.6 0.5 1 23 171 193 171 193 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF85-212 - 536 2.4e-82 267.0 114.7 4 15 1.4e-07 9.6e-05 22.6 1.2 1 23 199 221 199 221 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF85-212 - 536 2.4e-82 267.0 114.7 5 15 8.4e-09 5.8e-06 26.5 1.7 1 23 227 249 227 249 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF85-212 - 536 2.4e-82 267.0 114.7 6 15 7e-09 4.8e-06 26.7 0.5 1 23 255 277 255 277 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF85-212 - 536 2.4e-82 267.0 114.7 7 15 2.7e-07 0.00019 21.7 1.3 1 23 283 305 283 305 0.94 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF85-212 - 536 2.4e-82 267.0 114.7 8 15 1.4e-06 0.00096 19.5 4.4 1 23 311 333 311 333 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF85-212 - 536 2.4e-82 267.0 114.7 9 15 3.9e-08 2.7e-05 24.4 2.8 1 23 339 361 339 361 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF85-212 - 536 2.4e-82 267.0 114.7 10 15 4e-07 0.00028 21.2 1.3 1 23 367 389 367 389 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF85-212 - 536 2.4e-82 267.0 114.7 11 15 5.4e-09 3.8e-06 27.1 1.3 1 23 395 417 395 417 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF85-212 - 536 2.4e-82 267.0 114.7 12 15 9e-06 0.0062 16.9 0.1 1 23 423 445 423 445 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF85-212 - 536 2.4e-82 267.0 114.7 13 15 1.7e-08 1.2e-05 25.5 1.1 1 23 451 473 451 473 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF85-212 - 536 2.4e-82 267.0 114.7 14 15 1e-09 7e-07 29.4 0.7 1 23 479 501 479 501 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF85-212 - 536 2.4e-82 267.0 114.7 15 15 2.7e-05 0.019 15.4 0.3 1 23 507 529 507 529 0.96 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZNF85-212 - 536 4.4e-41 136.0 109.8 1 15 0.0016 1.1 10.3 2.1 1 23 115 137 115 138 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF85-212 - 536 4.4e-41 136.0 109.8 2 15 0.00027 0.19 12.7 0.7 1 23 143 165 143 166 0.91 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF85-212 - 536 4.4e-41 136.0 109.8 3 15 7.8e-06 0.0054 17.5 0.5 1 23 171 193 171 194 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF85-212 - 536 4.4e-41 136.0 109.8 4 15 1.9e-05 0.013 16.3 0.7 1 23 199 221 199 222 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF85-212 - 536 4.4e-41 136.0 109.8 5 15 7.8e-06 0.0054 17.5 1.1 1 23 227 249 227 250 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF85-212 - 536 4.4e-41 136.0 109.8 6 15 3.1e-05 0.021 15.6 0.4 1 23 255 277 255 278 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF85-212 - 536 4.4e-41 136.0 109.8 7 15 0.00016 0.11 13.4 1.1 1 23 283 305 283 306 0.91 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF85-212 - 536 4.4e-41 136.0 109.8 8 15 0.0021 1.5 9.9 3.2 1 23 311 333 311 334 0.91 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF85-212 - 536 4.4e-41 136.0 109.8 9 15 0.00016 0.11 13.4 2.1 1 23 339 361 339 362 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF85-212 - 536 4.4e-41 136.0 109.8 10 15 0.00015 0.1 13.5 1.3 1 23 367 389 367 390 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF85-212 - 536 4.4e-41 136.0 109.8 11 15 6.2e-06 0.0043 17.8 1.1 1 23 395 417 395 418 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF85-212 - 536 4.4e-41 136.0 109.8 12 15 0.0057 3.9 8.6 0.2 1 23 423 445 423 446 0.83 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF85-212 - 536 4.4e-41 136.0 109.8 13 15 1.1e-05 0.0074 17.0 1.0 1 23 451 473 451 474 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF85-212 - 536 4.4e-41 136.0 109.8 14 15 2.7e-05 0.019 15.8 0.5 1 23 479 501 479 502 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF85-212 - 536 4.4e-41 136.0 109.8 15 15 0.0052 3.6 8.7 0.5 1 23 507 529 507 530 0.85 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF85-212 - 536 2.5e-31 107.1 121.9 1 15 4.1e-05 0.028 14.4 1.8 2 24 115 137 115 140 0.92 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF85-212 - 536 2.5e-31 107.1 121.9 2 15 0.0014 0.96 9.5 1.0 2 24 143 165 142 168 0.89 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF85-212 - 536 2.5e-31 107.1 121.9 3 15 1.4e-05 0.0098 15.9 1.1 2 24 171 193 171 196 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF85-212 - 536 2.5e-31 107.1 121.9 4 15 2.4e-06 0.0017 18.3 0.7 2 24 199 221 199 224 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF85-212 - 536 2.5e-31 107.1 121.9 5 15 1.4e-05 0.0094 15.9 1.3 2 24 227 249 227 252 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF85-212 - 536 2.5e-31 107.1 121.9 6 15 5e-05 0.035 14.1 0.8 2 24 255 277 255 280 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF85-212 - 536 2.5e-31 107.1 121.9 7 15 0.0054 3.7 7.7 1.0 2 12 283 293 283 302 0.85 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF85-212 - 536 2.5e-31 107.1 121.9 8 15 0.0024 1.7 8.8 3.6 2 24 311 333 311 336 0.92 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF85-212 - 536 2.5e-31 107.1 121.9 9 15 0.00071 0.49 10.4 2.8 2 24 339 361 339 364 0.87 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF85-212 - 536 2.5e-31 107.1 121.9 10 15 0.0002 0.14 12.2 2.4 2 24 367 389 367 392 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF85-212 - 536 2.5e-31 107.1 121.9 11 15 2.4e-05 0.017 15.1 2.6 2 25 395 418 395 420 0.95 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF85-212 - 536 2.5e-31 107.1 121.9 12 15 0.017 12 6.1 0.3 2 12 423 433 423 434 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF85-212 - 536 2.5e-31 107.1 121.9 13 15 0.00054 0.37 10.8 2.4 2 24 451 473 451 476 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF85-212 - 536 2.5e-31 107.1 121.9 14 15 9.5e-05 0.065 13.2 0.9 2 24 479 501 479 504 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF85-212 - 536 2.5e-31 107.1 121.9 15 15 0.00078 0.54 10.3 0.4 2 24 507 529 507 532 0.91 C2H2-type zinc finger XPA_N PF01286.18 32 ZNF85-212 - 536 2.1e-24 85.2 69.4 1 15 0.096 66 3.7 0.7 3 12 116 125 114 133 0.85 XPA protein N-terminal XPA_N PF01286.18 32 ZNF85-212 - 536 2.1e-24 85.2 69.4 2 15 0.0038 2.6 8.1 0.2 3 14 144 155 143 160 0.87 XPA protein N-terminal XPA_N PF01286.18 32 ZNF85-212 - 536 2.1e-24 85.2 69.4 3 15 0.00089 0.62 10.2 0.2 3 14 172 183 170 186 0.92 XPA protein N-terminal XPA_N PF01286.18 32 ZNF85-212 - 536 2.1e-24 85.2 69.4 4 15 0.0051 3.5 7.7 0.2 3 11 200 208 198 214 0.90 XPA protein N-terminal XPA_N PF01286.18 32 ZNF85-212 - 536 2.1e-24 85.2 69.4 5 15 0.0021 1.5 9.0 0.1 3 14 228 239 226 245 0.86 XPA protein N-terminal XPA_N PF01286.18 32 ZNF85-212 - 536 2.1e-24 85.2 69.4 6 15 0.00042 0.29 11.2 0.2 3 14 256 267 254 273 0.88 XPA protein N-terminal XPA_N PF01286.18 32 ZNF85-212 - 536 2.1e-24 85.2 69.4 7 15 0.0014 0.95 9.6 0.0 3 19 284 300 282 303 0.84 XPA protein N-terminal XPA_N PF01286.18 32 ZNF85-212 - 536 2.1e-24 85.2 69.4 8 15 0.016 11 6.2 0.1 3 12 312 321 310 328 0.89 XPA protein N-terminal XPA_N PF01286.18 32 ZNF85-212 - 536 2.1e-24 85.2 69.4 9 15 0.0014 0.99 9.5 0.2 3 14 340 351 338 357 0.87 XPA protein N-terminal XPA_N PF01286.18 32 ZNF85-212 - 536 2.1e-24 85.2 69.4 10 15 0.0029 2 8.5 0.4 3 14 368 379 366 385 0.86 XPA protein N-terminal XPA_N PF01286.18 32 ZNF85-212 - 536 2.1e-24 85.2 69.4 11 15 0.0027 1.9 8.6 0.1 3 14 396 407 394 412 0.91 XPA protein N-terminal XPA_N PF01286.18 32 ZNF85-212 - 536 2.1e-24 85.2 69.4 12 15 0.0099 6.8 6.8 0.2 3 12 424 433 422 434 0.89 XPA protein N-terminal XPA_N PF01286.18 32 ZNF85-212 - 536 2.1e-24 85.2 69.4 13 15 0.00064 0.44 10.6 0.2 3 14 452 463 450 469 0.86 XPA protein N-terminal XPA_N PF01286.18 32 ZNF85-212 - 536 2.1e-24 85.2 69.4 14 15 0.00086 0.59 10.2 0.2 3 14 480 491 478 496 0.90 XPA protein N-terminal XPA_N PF01286.18 32 ZNF85-212 - 536 2.1e-24 85.2 69.4 15 15 0.0029 2 8.5 0.2 3 14 508 519 506 526 0.83 XPA protein N-terminal zf_UBZ PF18439.1 32 ZNF85-212 - 536 5.6e-19 67.4 72.9 1 16 0.91 6.3e+02 0.1 0.0 24 29 22 27 22 28 0.96 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF85-212 - 536 5.6e-19 67.4 72.9 2 16 0.019 13 5.5 0.4 3 20 115 133 113 134 0.77 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF85-212 - 536 5.6e-19 67.4 72.9 3 16 0.0066 4.6 6.9 0.1 2 13 142 153 141 162 0.80 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF85-212 - 536 5.6e-19 67.4 72.9 4 16 0.0042 2.9 7.6 0.2 3 15 171 183 169 190 0.81 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF85-212 - 536 5.6e-19 67.4 72.9 5 16 0.0022 1.5 8.5 0.1 3 20 199 217 197 218 0.78 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF85-212 - 536 5.6e-19 67.4 72.9 6 16 0.0063 4.4 7.0 0.1 3 20 227 245 225 246 0.82 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF85-212 - 536 5.6e-19 67.4 72.9 7 16 0.00089 0.61 9.7 0.2 3 20 255 273 253 274 0.88 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF85-212 - 536 5.6e-19 67.4 72.9 8 16 0.0037 2.6 7.7 0.2 3 21 283 302 281 302 0.84 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF85-212 - 536 5.6e-19 67.4 72.9 9 16 0.005 3.4 7.3 0.4 3 17 311 326 309 330 0.77 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF85-212 - 536 5.6e-19 67.4 72.9 10 16 0.0045 3.1 7.5 0.3 3 20 339 357 337 358 0.81 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF85-212 - 536 5.6e-19 67.4 72.9 11 16 0.0014 0.99 9.0 0.6 3 20 367 385 365 386 0.93 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF85-212 - 536 5.6e-19 67.4 72.9 12 16 0.0054 3.7 7.2 0.2 3 16 395 409 393 414 0.78 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF85-212 - 536 5.6e-19 67.4 72.9 13 16 0.019 13 5.5 0.2 3 12 423 432 421 437 0.87 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF85-212 - 536 5.6e-19 67.4 72.9 14 16 0.0014 0.96 9.1 0.2 3 20 451 469 449 470 0.82 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF85-212 - 536 5.6e-19 67.4 72.9 15 16 0.001 0.7 9.5 0.2 3 20 479 497 477 498 0.80 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF85-212 - 536 5.6e-19 67.4 72.9 16 16 0.023 16 5.2 0.1 3 13 507 517 505 523 0.85 Ubiquitin-Binding Zinc Finger Zn-ribbon_8 PF09723.10 40 ZNF85-212 - 536 3.5e-18 65.4 93.0 1 15 0.03 21 5.3 0.3 6 15 115 124 114 134 0.88 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF85-212 - 536 3.5e-18 65.4 93.0 2 15 9.6e-05 0.066 13.3 5.2 6 35 143 179 142 183 0.89 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF85-212 - 536 3.5e-18 65.4 93.0 3 15 6.6e-05 0.046 13.9 6.2 6 38 171 210 170 210 0.88 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF85-212 - 536 3.5e-18 65.4 93.0 4 15 1.5e-05 0.011 15.9 5.1 6 38 199 238 197 239 0.79 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF85-212 - 536 3.5e-18 65.4 93.0 5 15 5.9e-05 0.041 14.0 5.4 6 36 227 264 226 267 0.88 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF85-212 - 536 3.5e-18 65.4 93.0 6 15 0.00023 0.16 12.1 5.6 6 35 255 291 254 294 0.85 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF85-212 - 536 3.5e-18 65.4 93.0 7 15 0.0028 1.9 8.6 0.4 6 17 283 294 282 305 0.82 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF85-212 - 536 3.5e-18 65.4 93.0 8 15 0.00012 0.08 13.1 5.5 6 35 311 347 310 349 0.80 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF85-212 - 536 3.5e-18 65.4 93.0 9 15 0.0036 2.5 8.3 6.1 6 33 339 373 338 374 0.80 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF85-212 - 536 3.5e-18 65.4 93.0 10 15 0.012 8.2 6.6 0.9 6 23 367 384 366 394 0.81 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF85-212 - 536 3.5e-18 65.4 93.0 11 15 0.00024 0.17 12.1 7.2 6 34 395 430 393 434 0.83 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF85-212 - 536 3.5e-18 65.4 93.0 12 15 0.00012 0.083 13.0 5.5 6 34 423 458 421 461 0.92 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF85-212 - 536 3.5e-18 65.4 93.0 13 15 7.8e-05 0.054 13.6 5.7 6 35 451 487 450 490 0.85 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF85-212 - 536 3.5e-18 65.4 93.0 14 15 0.0096 6.6 6.9 7.0 6 34 479 514 478 517 0.86 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF85-212 - 536 3.5e-18 65.4 93.0 15 15 0.026 18 5.5 0.7 6 16 507 517 506 527 0.84 Zinc ribbon domain zf-C2H2_jaz PF12171.8 27 ZNF85-212 - 536 9.4e-17 60.8 91.4 1 15 5.2 3.6e+03 -1.6 0.5 2 11 115 124 114 131 0.89 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF85-212 - 536 9.4e-17 60.8 91.4 2 15 0.006 4.1 7.8 0.4 2 22 143 163 143 163 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF85-212 - 536 9.4e-17 60.8 91.4 3 15 0.0015 1 9.7 0.6 2 22 171 191 170 191 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF85-212 - 536 9.4e-17 60.8 91.4 4 15 0.0015 1 9.7 0.2 2 20 199 217 198 218 0.89 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF85-212 - 536 9.4e-17 60.8 91.4 5 15 6e-05 0.041 14.2 0.1 2 22 227 247 226 247 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF85-212 - 536 9.4e-17 60.8 91.4 6 15 0.0011 0.74 10.2 0.2 2 21 255 274 254 275 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF85-212 - 536 9.4e-17 60.8 91.4 7 15 0.31 2.1e+02 2.3 0.4 2 21 283 302 282 303 0.91 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF85-212 - 536 9.4e-17 60.8 91.4 8 15 4 2.8e+03 -1.2 1.4 2 20 311 329 310 330 0.74 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF85-212 - 536 9.4e-17 60.8 91.4 9 15 0.00012 0.081 13.2 0.5 2 21 339 358 338 359 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF85-212 - 536 9.4e-17 60.8 91.4 10 15 0.0021 1.4 9.3 1.6 2 22 367 387 366 387 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF85-212 - 536 9.4e-17 60.8 91.4 11 15 0.0042 2.9 8.3 1.5 2 24 395 417 394 417 0.95 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF85-212 - 536 9.4e-17 60.8 91.4 12 15 0.0099 6.8 7.1 0.0 2 20 423 441 422 442 0.79 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF85-212 - 536 9.4e-17 60.8 91.4 13 15 0.0025 1.7 9.0 0.6 2 22 451 471 450 471 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF85-212 - 536 9.4e-17 60.8 91.4 14 15 0.0014 0.93 9.9 0.2 2 22 479 499 478 499 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF85-212 - 536 9.4e-17 60.8 91.4 15 15 0.00027 0.18 12.1 0.3 2 21 507 526 506 527 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_11 PF16622.5 29 ZNF85-212 - 536 1.7e-09 37.3 49.1 1 15 0.044 30 4.5 1.8 5 26 115 136 113 137 0.89 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF85-212 - 536 1.7e-09 37.3 49.1 2 15 0.0045 3.1 7.6 0.1 5 26 143 164 141 165 0.93 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF85-212 - 536 1.7e-09 37.3 49.1 3 15 0.035 24 4.8 0.0 5 26 171 192 168 193 0.85 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF85-212 - 536 1.7e-09 37.3 49.1 4 15 0.16 1.1e+02 2.7 0.1 5 15 199 209 196 221 0.75 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF85-212 - 536 1.7e-09 37.3 49.1 5 15 0.012 8.3 6.3 0.1 5 26 227 248 224 249 0.90 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF85-212 - 536 1.7e-09 37.3 49.1 6 15 0.085 59 3.6 0.1 5 24 255 274 252 277 0.76 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF85-212 - 536 1.7e-09 37.3 49.1 7 15 0.12 85 3.0 0.1 5 23 283 301 280 305 0.76 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF85-212 - 536 1.7e-09 37.3 49.1 8 15 0.32 2.2e+02 1.7 0.1 5 14 311 320 308 333 0.79 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF85-212 - 536 1.7e-09 37.3 49.1 9 15 0.0058 4 7.3 0.2 5 26 339 360 336 361 0.90 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF85-212 - 536 1.7e-09 37.3 49.1 10 15 2.1 1.4e+03 -0.9 0.1 5 14 367 376 365 388 0.71 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF85-212 - 536 1.7e-09 37.3 49.1 11 15 0.056 39 4.1 0.1 6 23 396 413 393 415 0.92 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF85-212 - 536 1.7e-09 37.3 49.1 12 15 0.23 1.6e+02 2.2 0.0 5 14 423 432 419 445 0.76 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF85-212 - 536 1.7e-09 37.3 49.1 13 15 0.016 11 5.9 0.1 5 26 451 472 448 473 0.88 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF85-212 - 536 1.7e-09 37.3 49.1 14 15 0.025 17 5.3 0.1 7 26 481 500 478 501 0.92 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF85-212 - 536 1.7e-09 37.3 49.1 15 15 0.37 2.5e+02 1.5 0.0 5 26 507 528 504 529 0.86 zinc-finger C2H2-type zf-trcl PF13451.6 48 ZNF85-212 - 536 1.2e-08 34.7 71.0 1 13 0.061 42 4.1 0.5 3 14 113 124 111 125 0.89 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF85-212 - 536 1.2e-08 34.7 71.0 2 13 0.015 10 6.1 5.0 5 46 143 183 141 185 0.79 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF85-212 - 536 1.2e-08 34.7 71.0 3 13 0.027 19 5.3 0.2 3 14 197 208 195 212 0.89 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF85-212 - 536 1.2e-08 34.7 71.0 4 13 0.017 12 5.9 0.1 3 14 225 236 223 241 0.87 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF85-212 - 536 1.2e-08 34.7 71.0 5 13 0.031 21 5.1 0.2 3 14 253 264 246 269 0.73 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF85-212 - 536 1.2e-08 34.7 71.0 6 13 0.016 11 6.0 0.1 3 14 281 292 279 297 0.82 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF85-212 - 536 1.2e-08 34.7 71.0 7 13 0.035 24 4.9 0.1 3 15 309 321 307 325 0.84 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF85-212 - 536 1.2e-08 34.7 71.0 8 13 0.02 14 5.7 5.4 3 46 337 379 335 381 0.77 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF85-212 - 536 1.2e-08 34.7 71.0 9 13 0.14 93 3.0 0.1 3 14 393 404 391 409 0.85 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF85-212 - 536 1.2e-08 34.7 71.0 10 13 0.0085 5.9 6.9 0.1 2 16 420 434 419 437 0.87 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF85-212 - 536 1.2e-08 34.7 71.0 11 13 0.036 25 4.9 0.1 3 14 449 460 447 465 0.84 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF85-212 - 536 1.2e-08 34.7 71.0 12 13 0.02 14 5.7 0.1 3 14 477 488 475 493 0.89 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF85-212 - 536 1.2e-08 34.7 71.0 13 13 0.02 14 5.7 0.2 3 17 505 519 503 521 0.87 Probable zinc-ribbon domain zinc_ribbon_15 PF17032.5 86 ZNF85-212 - 536 5.2e-08 33.5 80.3 1 8 0.029 20 6.0 6.4 33 76 110 153 76 161 0.83 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF85-212 - 536 5.2e-08 33.5 80.3 2 8 0.00056 0.38 11.5 3.2 32 76 165 209 158 217 0.87 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF85-212 - 536 5.2e-08 33.5 80.3 3 8 0.00054 0.37 11.6 3.0 35 79 224 268 213 274 0.85 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF85-212 - 536 5.2e-08 33.5 80.3 4 8 0.0017 1.2 10.0 2.4 35 76 280 321 270 326 0.83 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF85-212 - 536 5.2e-08 33.5 80.3 5 8 0.0017 1.2 10.0 4.4 34 79 335 380 321 385 0.83 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF85-212 - 536 5.2e-08 33.5 80.3 6 8 0.00076 0.52 11.1 4.5 31 73 388 430 382 437 0.88 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF85-212 - 536 5.2e-08 33.5 80.3 7 8 0.00022 0.15 12.8 3.9 34 79 447 492 436 497 0.84 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF85-212 - 536 5.2e-08 33.5 80.3 8 8 0.044 31 5.4 9.0 31 74 472 515 453 522 0.67 zinc-ribbon family # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF85-212.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF85-212.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF85-212.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF85-212.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF85-212.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:15:30 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF85-213.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF85-213.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF85-213.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF85-213.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF85-213.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:15:31 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF85-214.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF85-214.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF85-214.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF85-214.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF85-214.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:15:31 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZNF860-201 - 632 6.6e-82 266.6 123.5 1 17 0.85 8.5e+02 0.7 0.1 2 13 89 100 88 103 0.88 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF860-201 - 632 6.6e-82 266.6 123.5 2 17 7.5 7.5e+03 -2.3 0.1 7 15 143 151 143 152 0.84 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF860-201 - 632 6.6e-82 266.6 123.5 3 17 0.15 1.5e+02 3.0 0.2 8 25 223 240 220 241 0.87 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF860-201 - 632 6.6e-82 266.6 123.5 4 17 4.8e-05 0.048 14.1 0.0 2 25 245 268 245 269 0.77 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF860-201 - 632 6.6e-82 266.6 123.5 5 17 2.4e-07 0.00024 21.4 6.5 5 25 276 296 273 297 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF860-201 - 632 6.6e-82 266.6 123.5 6 17 8.1e-11 8.1e-08 32.4 1.8 1 25 300 324 300 325 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF860-201 - 632 6.6e-82 266.6 123.5 7 17 1.7e-12 1.7e-09 37.6 1.9 1 25 328 352 328 353 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF860-201 - 632 6.6e-82 266.6 123.5 8 17 1.8e-11 1.8e-08 34.4 1.7 1 25 356 380 356 380 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF860-201 - 632 6.6e-82 266.6 123.5 9 17 0.00039 0.38 11.3 0.6 5 26 388 409 385 409 0.87 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF860-201 - 632 6.6e-82 266.6 123.5 10 17 6.6e-05 0.065 13.7 1.0 5 25 416 436 414 437 0.90 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF860-201 - 632 6.6e-82 266.6 123.5 11 17 6.5e-09 6.4e-06 26.4 3.9 2 26 441 465 440 465 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF860-201 - 632 6.6e-82 266.6 123.5 12 17 2.7e-10 2.6e-07 30.7 1.1 1 26 468 493 468 493 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF860-201 - 632 6.6e-82 266.6 123.5 13 17 2.7e-10 2.7e-07 30.7 0.1 1 25 496 520 496 521 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF860-201 - 632 6.6e-82 266.6 123.5 14 17 1.8e-09 1.8e-06 28.1 1.8 2 25 525 548 524 549 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF860-201 - 632 6.6e-82 266.6 123.5 15 17 1.3e-06 0.0013 19.0 0.1 4 18 555 569 554 576 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF860-201 - 632 6.6e-82 266.6 123.5 16 17 4.7e-07 0.00046 20.5 0.7 7 26 586 605 584 605 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF860-201 - 632 6.6e-82 266.6 123.5 17 17 4.5e-06 0.0045 17.4 2.6 4 24 611 631 608 632 0.93 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZNF860-201 - 632 6.2e-58 190.2 132.0 1 15 8.2 8.1e+03 -2.3 0.4 14 23 87 96 85 96 0.82 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF860-201 - 632 6.2e-58 190.2 132.0 2 15 0.23 2.2e+02 2.6 0.1 7 20 236 249 230 251 0.79 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF860-201 - 632 6.2e-58 190.2 132.0 3 15 0.0024 2.4 8.8 6.9 1 21 258 278 258 280 0.90 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF860-201 - 632 6.2e-58 190.2 132.0 4 15 7.4e-10 7.4e-07 29.3 1.7 1 23 286 308 286 308 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF860-201 - 632 6.2e-58 190.2 132.0 5 15 1.1e-10 1.1e-07 31.9 1.4 1 23 314 336 314 336 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF860-201 - 632 6.2e-58 190.2 132.0 6 15 1.9e-07 0.00019 21.7 3.2 1 23 342 364 342 364 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF860-201 - 632 6.2e-58 190.2 132.0 7 15 3.2e-08 3.2e-05 24.1 0.4 1 23 370 392 370 392 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF860-201 - 632 6.2e-58 190.2 132.0 8 15 6.9e-07 0.00069 19.9 0.9 1 23 398 420 398 420 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF860-201 - 632 6.2e-58 190.2 132.0 9 15 9.2e-09 9.2e-06 25.8 2.9 1 23 426 448 426 448 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF860-201 - 632 6.2e-58 190.2 132.0 10 15 7.2e-07 0.00072 19.9 1.8 1 23 454 476 454 476 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF860-201 - 632 6.2e-58 190.2 132.0 11 15 4.7e-08 4.7e-05 23.6 0.8 1 23 482 504 482 504 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF860-201 - 632 6.2e-58 190.2 132.0 12 15 6.6e-09 6.5e-06 26.3 1.4 1 23 510 532 510 532 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF860-201 - 632 6.2e-58 190.2 132.0 13 15 2.4e-05 0.024 15.1 5.2 1 23 538 560 538 560 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF860-201 - 632 6.2e-58 190.2 132.0 14 15 7.4 7.4e+03 -2.2 0.1 2 16 567 581 566 583 0.61 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF860-201 - 632 6.2e-58 190.2 132.0 15 15 1e-06 0.001 19.4 6.1 1 23 594 616 594 616 0.98 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZNF860-201 - 632 3.1e-28 96.0 113.1 1 13 0.2 2e+02 3.2 0.1 1 20 230 249 230 251 0.79 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF860-201 - 632 3.1e-28 96.0 113.1 2 13 0.0095 9.5 7.4 6.3 1 20 258 277 258 280 0.82 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF860-201 - 632 3.1e-28 96.0 113.1 3 13 3.8e-05 0.038 14.8 1.4 1 23 286 308 286 309 0.91 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF860-201 - 632 3.1e-28 96.0 113.1 4 13 1.3e-06 0.0013 19.4 1.0 1 23 314 336 314 337 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF860-201 - 632 3.1e-28 96.0 113.1 5 13 0.00025 0.25 12.3 2.2 1 23 342 364 342 365 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF860-201 - 632 3.1e-28 96.0 113.1 6 13 1.2e-05 0.012 16.3 0.2 1 23 370 392 370 393 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF860-201 - 632 3.1e-28 96.0 113.1 7 13 2e-05 0.02 15.7 0.6 1 23 398 420 398 421 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF860-201 - 632 3.1e-28 96.0 113.1 8 13 3.8e-05 0.038 14.8 2.3 1 23 426 448 426 449 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF860-201 - 632 3.1e-28 96.0 113.1 9 13 0.0004 0.4 11.6 1.4 1 23 454 476 454 477 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF860-201 - 632 3.1e-28 96.0 113.1 10 13 0.0002 0.2 12.6 0.6 1 23 482 504 482 505 0.91 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF860-201 - 632 3.1e-28 96.0 113.1 11 13 1.7e-05 0.017 15.9 1.1 1 23 510 532 510 533 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF860-201 - 632 3.1e-28 96.0 113.1 12 13 0.001 1 10.4 3.9 1 23 538 560 538 561 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF860-201 - 632 3.1e-28 96.0 113.1 13 13 0.0022 2.2 9.3 4.0 1 23 594 616 594 617 0.92 C2H2-type zinc finger KRAB PF01352.27 42 ZNF860-201 - 632 3.4e-22 77.8 0.1 1 1 5.8e-25 5.8e-22 77.1 0.1 2 42 24 64 23 64 0.97 KRAB box zf-C2H2_6 PF13912.6 27 ZNF860-201 - 632 9.9e-15 54.1 96.5 1 12 0.0033 3.3 7.8 5.2 2 12 258 268 257 281 0.91 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF860-201 - 632 9.9e-15 54.1 96.5 2 12 2e-05 0.02 14.9 1.9 2 24 286 308 286 311 0.90 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF860-201 - 632 9.9e-15 54.1 96.5 3 12 2.8e-05 0.028 14.4 0.5 2 24 314 336 314 339 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF860-201 - 632 9.9e-15 54.1 96.5 4 12 0.0014 1.4 9.0 1.0 2 20 342 360 342 366 0.77 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF860-201 - 632 9.9e-15 54.1 96.5 5 12 0.00096 0.96 9.5 0.7 2 14 370 382 370 392 0.78 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF860-201 - 632 9.9e-15 54.1 96.5 6 12 0.0091 9 6.4 1.1 2 12 398 408 397 409 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF860-201 - 632 9.9e-15 54.1 96.5 7 12 0.055 55 3.9 1.3 2 12 426 436 425 438 0.89 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF860-201 - 632 9.9e-15 54.1 96.5 8 12 0.00017 0.17 12.0 1.5 2 24 454 476 454 479 0.84 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF860-201 - 632 9.9e-15 54.1 96.5 9 12 9.8e-05 0.098 12.7 0.6 2 24 482 504 482 507 0.84 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF860-201 - 632 9.9e-15 54.1 96.5 10 12 0.00018 0.18 11.8 0.5 2 13 510 521 510 532 0.85 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF860-201 - 632 9.9e-15 54.1 96.5 11 12 1.7 1.7e+03 -0.8 5.0 2 12 538 548 538 560 0.92 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF860-201 - 632 9.9e-15 54.1 96.5 12 12 0.0021 2.1 8.4 0.9 1 13 593 605 593 606 0.94 C2H2-type zinc finger Zn-ribbon_8 PF09723.10 40 ZNF860-201 - 632 6.6e-11 42.1 77.4 1 12 2.6 2.6e+03 -1.3 0.1 6 16 230 240 229 248 0.82 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF860-201 - 632 6.6e-11 42.1 77.4 2 12 0.033 33 4.7 3.1 5 17 257 269 257 283 0.79 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF860-201 - 632 6.6e-11 42.1 77.4 3 12 0.001 1 9.5 0.1 6 17 286 297 285 307 0.84 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF860-201 - 632 6.6e-11 42.1 77.4 4 12 6.3e-05 0.063 13.4 3.9 6 38 314 353 313 354 0.89 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF860-201 - 632 6.6e-11 42.1 77.4 5 12 0.0013 1.3 9.2 3.8 6 33 370 404 369 405 0.90 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF860-201 - 632 6.6e-11 42.1 77.4 6 12 0.00045 0.45 10.7 4.0 6 38 398 437 397 439 0.81 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF860-201 - 632 6.6e-11 42.1 77.4 7 12 4.8e-06 0.0047 17.0 3.1 6 36 454 491 453 494 0.91 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF860-201 - 632 6.6e-11 42.1 77.4 8 12 5.3e-05 0.053 13.6 4.3 6 34 482 517 480 517 0.92 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF860-201 - 632 6.6e-11 42.1 77.4 9 12 0.0036 3.6 7.8 6.0 6 32 510 543 508 543 0.84 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF860-201 - 632 6.6e-11 42.1 77.4 10 12 0.019 19 5.5 2.6 6 17 538 549 537 570 0.75 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF860-201 - 632 6.6e-11 42.1 77.4 11 12 0.099 99 3.2 1.2 7 34 595 601 565 605 0.52 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF860-201 - 632 6.6e-11 42.1 77.4 12 12 0.066 66 3.7 1.9 7 22 595 616 593 632 0.71 Zinc ribbon domain zf-C2H2_jaz PF12171.8 27 ZNF860-201 - 632 1.3e-10 41.3 71.4 1 12 0.036 36 4.8 0.9 1 12 257 268 257 271 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF860-201 - 632 1.3e-10 41.3 71.4 2 12 0.018 18 5.8 0.4 2 20 286 304 285 304 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF860-201 - 632 1.3e-10 41.3 71.4 3 12 7.3e-06 0.0073 16.6 0.2 2 21 314 333 313 334 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF860-201 - 632 1.3e-10 41.3 71.4 4 12 0.00016 0.16 12.3 0.3 2 21 342 361 341 362 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF860-201 - 632 1.3e-10 41.3 71.4 5 12 0.015 14 6.1 0.1 2 20 370 388 369 390 0.88 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF860-201 - 632 1.3e-10 41.3 71.4 6 12 0.0045 4.5 7.7 0.9 2 22 398 418 397 418 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF860-201 - 632 1.3e-10 41.3 71.4 7 12 0.39 3.9e+02 1.5 0.9 2 24 426 448 425 448 0.89 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF860-201 - 632 1.3e-10 41.3 71.4 8 12 0.0026 2.6 8.4 0.6 2 21 454 473 453 474 0.91 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF860-201 - 632 1.3e-10 41.3 71.4 9 12 0.0037 3.7 7.9 0.2 2 21 482 501 481 502 0.91 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF860-201 - 632 1.3e-10 41.3 71.4 10 12 0.018 18 5.8 0.2 2 20 510 528 509 528 0.91 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF860-201 - 632 1.3e-10 41.3 71.4 11 12 0.0035 3.5 8.0 1.2 2 22 538 558 537 558 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF860-201 - 632 1.3e-10 41.3 71.4 12 12 0.26 2.6e+02 2.1 1.7 2 21 594 613 593 614 0.86 Zinc-finger double-stranded RNA-binding zf-met PF12874.7 25 ZNF860-201 - 632 9.4e-08 32.2 88.2 1 13 0.01 10 6.7 1.3 1 19 258 276 258 276 0.85 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF860-201 - 632 9.4e-08 32.2 88.2 2 13 0.0036 3.6 8.1 1.6 1 19 286 304 286 305 0.97 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF860-201 - 632 9.4e-08 32.2 88.2 3 13 5.7e-05 0.056 13.8 0.4 1 20 314 333 314 337 0.91 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF860-201 - 632 9.4e-08 32.2 88.2 4 13 0.00021 0.21 12.0 0.9 1 21 342 362 342 365 0.91 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF860-201 - 632 9.4e-08 32.2 88.2 5 13 0.079 78 3.9 0.2 1 19 370 388 370 391 0.88 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF860-201 - 632 9.4e-08 32.2 88.2 6 13 0.0086 8.6 6.9 1.4 1 21 398 418 398 420 0.91 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF860-201 - 632 9.4e-08 32.2 88.2 7 13 4.3 4.3e+03 -1.7 0.5 1 21 426 446 426 449 0.79 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF860-201 - 632 9.4e-08 32.2 88.2 8 13 0.34 3.4e+02 1.8 1.4 1 20 454 473 454 477 0.87 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF860-201 - 632 9.4e-08 32.2 88.2 9 13 0.0095 9.5 6.8 0.7 1 20 482 501 482 505 0.90 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF860-201 - 632 9.4e-08 32.2 88.2 10 13 0.0084 8.3 6.9 0.2 1 19 510 528 510 528 0.95 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF860-201 - 632 9.4e-08 32.2 88.2 11 13 0.00073 0.73 10.3 2.1 1 21 538 558 538 561 0.91 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF860-201 - 632 9.4e-08 32.2 88.2 12 13 0.012 12 6.4 0.6 2 21 595 614 594 616 0.90 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZNF860-201 - 632 9.4e-08 32.2 88.2 13 13 0.0089 8.8 6.9 0.4 8 23 614 629 613 630 0.89 Zinc-finger of C2H2 type # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF860-201.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF860-201.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF860-201.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF860-201.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF860-201.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:15:32 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF860-202.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF860-202.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF860-202.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF860-202.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF860-202.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:15:32 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZNF879-201 - 563 5.1e-106 342.8 87.0 1 14 0.2 1.5e+02 3.1 0.5 15 26 204 215 196 215 0.82 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF879-201 - 563 5.1e-106 342.8 87.0 2 14 2.3e-11 1.7e-08 34.5 1.3 1 25 218 242 218 243 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF879-201 - 563 5.1e-106 342.8 87.0 3 14 1.5e-10 1.1e-07 31.9 0.2 1 25 246 270 246 270 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF879-201 - 563 5.1e-106 342.8 87.0 4 14 1.7e-10 1.3e-07 31.7 1.1 5 25 278 298 274 298 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF879-201 - 563 5.1e-106 342.8 87.0 5 14 3.6e-11 2.7e-08 33.9 0.3 1 25 302 326 302 327 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF879-201 - 563 5.1e-106 342.8 87.0 6 14 7.4e-11 5.6e-08 32.9 0.6 2 26 331 355 330 355 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF879-201 - 563 5.1e-106 342.8 87.0 7 14 5.6e-10 4.2e-07 30.1 3.7 2 25 359 382 358 383 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF879-201 - 563 5.1e-106 342.8 87.0 8 14 1.2e-10 9.3e-08 32.2 0.1 4 25 389 410 386 411 0.90 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF879-201 - 563 5.1e-106 342.8 87.0 9 14 3.4e-11 2.6e-08 33.9 0.2 1 25 414 438 414 438 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF879-201 - 563 5.1e-106 342.8 87.0 10 14 2.9e-10 2.1e-07 31.0 1.1 2 26 443 467 442 467 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF879-201 - 563 5.1e-106 342.8 87.0 11 14 5.8e-10 4.3e-07 30.1 0.7 3 25 472 494 470 495 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF879-201 - 563 5.1e-106 342.8 87.0 12 14 2.5e-11 1.9e-08 34.4 0.1 1 25 498 522 498 523 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF879-201 - 563 5.1e-106 342.8 87.0 13 14 6.8e-13 5.1e-10 39.3 0.6 1 25 526 550 526 551 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF879-201 - 563 5.1e-106 342.8 87.0 14 14 2.1 1.6e+03 -0.2 0.3 1 9 554 562 554 563 0.87 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZNF879-201 - 563 1.6e-73 239.2 99.9 1 13 6.2e-07 0.00046 20.5 2.2 1 23 204 226 204 226 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF879-201 - 563 1.6e-73 239.2 99.9 2 13 1.6e-08 1.2e-05 25.4 1.8 1 23 232 254 232 254 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF879-201 - 563 1.6e-73 239.2 99.9 3 13 2.1e-06 0.0016 18.8 0.3 1 23 260 282 260 282 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF879-201 - 563 1.6e-73 239.2 99.9 4 13 3e-09 2.2e-06 27.8 1.2 1 23 288 310 288 310 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF879-201 - 563 1.6e-73 239.2 99.9 5 13 1e-07 7.8e-05 22.9 3.6 1 23 316 338 316 338 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF879-201 - 563 1.6e-73 239.2 99.9 6 13 1.2e-06 0.00091 19.6 2.1 1 23 344 366 344 366 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF879-201 - 563 1.6e-73 239.2 99.9 7 13 1.7e-07 0.00012 22.3 2.0 1 23 372 394 372 394 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF879-201 - 563 1.6e-73 239.2 99.9 8 13 1e-08 7.5e-06 26.1 0.1 1 23 400 422 400 422 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF879-201 - 563 1.6e-73 239.2 99.9 9 13 3.6e-05 0.027 14.9 0.8 1 23 428 450 428 450 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF879-201 - 563 1.6e-73 239.2 99.9 10 13 3.1e-06 0.0023 18.3 1.6 1 23 456 478 456 478 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF879-201 - 563 1.6e-73 239.2 99.9 11 13 7e-09 5.2e-06 26.6 0.3 1 23 484 506 484 506 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF879-201 - 563 1.6e-73 239.2 99.9 12 13 1.4e-09 1e-06 28.8 1.0 1 23 512 534 512 534 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF879-201 - 563 1.6e-73 239.2 99.9 13 13 4.1e-10 3.1e-07 30.5 1.6 1 23 540 562 540 562 0.99 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZNF879-201 - 563 2.7e-45 149.1 94.6 1 13 3.2e-05 0.024 15.5 1.6 1 23 204 226 204 227 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF879-201 - 563 2.7e-45 149.1 94.6 2 13 1e-05 0.0075 17.0 1.8 1 23 232 254 232 255 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF879-201 - 563 2.7e-45 149.1 94.6 3 13 6.4e-05 0.048 14.5 0.3 1 23 260 282 260 283 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF879-201 - 563 2.7e-45 149.1 94.6 4 13 1e-06 0.00075 20.1 0.8 1 23 288 310 288 311 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF879-201 - 563 2.7e-45 149.1 94.6 5 13 4.3e-05 0.032 15.1 3.1 1 23 316 338 316 339 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF879-201 - 563 2.7e-45 149.1 94.6 6 13 2.1e-06 0.0015 19.2 1.4 1 23 344 366 344 367 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF879-201 - 563 2.7e-45 149.1 94.6 7 13 0.00012 0.09 13.7 1.7 1 23 372 394 372 395 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF879-201 - 563 2.7e-45 149.1 94.6 8 13 8.1e-06 0.0061 17.3 0.2 1 23 400 422 400 423 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF879-201 - 563 2.7e-45 149.1 94.6 9 13 0.0062 4.6 8.3 0.7 1 23 428 450 428 451 0.80 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF879-201 - 563 2.7e-45 149.1 94.6 10 13 2e-05 0.015 16.1 1.1 1 23 456 478 456 479 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF879-201 - 563 2.7e-45 149.1 94.6 11 13 5.7e-05 0.043 14.7 0.3 1 23 484 506 484 507 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF879-201 - 563 2.7e-45 149.1 94.6 12 13 1.9e-06 0.0014 19.3 0.7 1 23 512 534 512 535 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF879-201 - 563 2.7e-45 149.1 94.6 13 13 1.1e-06 0.0008 20.1 1.2 1 23 540 562 540 563 0.97 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF879-201 - 563 3.2e-27 94.0 96.4 1 13 0.061 45 4.2 1.7 2 11 204 213 203 226 0.88 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF879-201 - 563 3.2e-27 94.0 96.4 2 13 0.00042 0.31 11.1 1.7 2 24 232 254 231 257 0.92 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF879-201 - 563 3.2e-27 94.0 96.4 3 13 3.2e-06 0.0024 17.8 0.4 2 24 260 282 260 285 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF879-201 - 563 3.2e-27 94.0 96.4 4 13 0.00015 0.11 12.5 1.3 2 21 288 307 288 312 0.81 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF879-201 - 563 3.2e-27 94.0 96.4 5 13 0.0051 3.8 7.6 3.0 2 22 316 336 316 340 0.88 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF879-201 - 563 3.2e-27 94.0 96.4 6 13 0.00013 0.096 12.7 0.7 2 15 344 357 344 367 0.83 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF879-201 - 563 3.2e-27 94.0 96.4 7 13 9.6e-05 0.072 13.1 1.0 2 24 372 394 372 397 0.87 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF879-201 - 563 3.2e-27 94.0 96.4 8 13 0.00026 0.2 11.7 0.5 2 24 400 422 400 425 0.88 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF879-201 - 563 3.2e-27 94.0 96.4 9 13 0.0013 0.94 9.5 0.2 2 12 428 438 428 450 0.87 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF879-201 - 563 3.2e-27 94.0 96.4 10 13 2.8e-05 0.021 14.8 1.9 2 24 456 478 456 481 0.92 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF879-201 - 563 3.2e-27 94.0 96.4 11 13 0.012 9.2 6.4 0.3 2 24 484 506 484 509 0.89 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF879-201 - 563 3.2e-27 94.0 96.4 12 13 8.3e-07 0.00062 19.7 0.5 2 24 512 534 512 537 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF879-201 - 563 3.2e-27 94.0 96.4 13 13 0.0001 0.078 13.0 3.2 2 24 540 562 540 563 0.97 C2H2-type zinc finger KRAB PF01352.27 42 ZNF879-201 - 563 3.4e-23 81.0 0.2 1 1 8e-26 6e-23 80.2 0.2 1 42 13 54 13 54 0.99 KRAB box Zn-ribbon_8 PF09723.10 40 ZNF879-201 - 563 4.7e-21 74.6 52.8 1 10 0.00064 0.48 10.6 1.9 6 34 204 239 203 243 0.85 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF879-201 - 563 4.7e-21 74.6 52.8 2 10 0.0016 1.2 9.3 3.4 6 34 232 267 231 270 0.81 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF879-201 - 563 4.7e-21 74.6 52.8 3 10 0.00017 0.13 12.4 3.5 6 35 260 296 258 298 0.90 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF879-201 - 563 4.7e-21 74.6 52.8 4 10 4.6e-05 0.034 14.3 5.5 6 35 288 324 287 328 0.91 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF879-201 - 563 4.7e-21 74.6 52.8 5 10 0.006 4.4 7.5 0.8 6 19 316 329 315 340 0.82 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF879-201 - 563 4.7e-21 74.6 52.8 6 10 0.00097 0.73 10.0 0.1 6 22 344 360 342 366 0.86 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF879-201 - 563 4.7e-21 74.6 52.8 7 10 2.2e-06 0.0016 18.5 1.3 6 35 372 408 371 412 0.90 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF879-201 - 563 4.7e-21 74.6 52.8 8 10 3.2e-06 0.0024 18.0 0.8 6 34 428 463 427 469 0.91 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF879-201 - 563 4.7e-21 74.6 52.8 9 10 1.7e-05 0.013 15.7 1.7 6 37 484 522 483 524 0.92 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF879-201 - 563 4.7e-21 74.6 52.8 10 10 0.0018 1.4 9.1 0.1 6 19 540 553 539 561 0.80 Zinc ribbon domain zf-C2H2_jaz PF12171.8 27 ZNF879-201 - 563 2e-16 59.8 62.6 1 13 0.012 8.9 6.7 2.1 2 22 204 224 203 224 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF879-201 - 563 2e-16 59.8 62.6 2 13 0.00022 0.16 12.3 0.4 2 22 232 252 231 252 0.95 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF879-201 - 563 2e-16 59.8 62.6 3 13 0.45 3.3e+02 1.7 0.0 2 12 260 270 259 280 0.83 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF879-201 - 563 2e-16 59.8 62.6 4 13 2.4e-06 0.0018 18.5 0.1 2 22 288 308 287 308 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF879-201 - 563 2e-16 59.8 62.6 5 13 2.7 2e+03 -0.7 0.6 2 12 316 326 315 334 0.81 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF879-201 - 563 2e-16 59.8 62.6 6 13 0.095 71 3.9 0.0 2 20 344 362 343 362 0.86 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF879-201 - 563 2e-16 59.8 62.6 7 13 0.31 2.3e+02 2.2 0.5 2 21 372 391 371 392 0.84 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF879-201 - 563 2e-16 59.8 62.6 8 13 0.0017 1.3 9.4 0.1 2 22 400 420 399 420 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF879-201 - 563 2e-16 59.8 62.6 9 13 1.3 9.4e+02 0.3 0.3 2 12 428 438 427 438 0.87 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF879-201 - 563 2e-16 59.8 62.6 10 13 0.00083 0.62 10.4 0.1 2 22 456 476 455 476 0.90 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF879-201 - 563 2e-16 59.8 62.6 11 13 0.0075 5.6 7.4 0.5 2 22 484 504 483 504 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF879-201 - 563 2e-16 59.8 62.6 12 13 0.00072 0.54 10.6 0.0 2 22 512 532 511 532 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF879-201 - 563 2e-16 59.8 62.6 13 13 6.3e-05 0.047 14.0 1.2 2 24 540 562 539 563 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_11 PF16622.5 29 ZNF879-201 - 563 2.1e-14 53.0 85.7 1 13 0.11 85 3.0 5.9 5 26 204 225 201 226 0.92 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF879-201 - 563 2.1e-14 53.0 85.7 2 13 0.0032 2.4 8.0 2.3 5 26 232 253 231 254 0.93 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF879-201 - 563 2.1e-14 53.0 85.7 3 13 0.024 18 5.2 0.9 7 26 262 281 260 282 0.90 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF879-201 - 563 2.1e-14 53.0 85.7 4 13 0.00034 0.25 11.1 0.3 5 26 288 309 286 310 0.94 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF879-201 - 563 2.1e-14 53.0 85.7 5 13 0.00046 0.34 10.7 2.2 5 26 316 337 313 338 0.93 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF879-201 - 563 2.1e-14 53.0 85.7 6 13 7.7e-07 0.00057 19.6 1.2 6 26 345 365 342 366 0.94 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF879-201 - 563 2.1e-14 53.0 85.7 7 13 0.053 40 4.1 0.6 6 26 373 393 370 394 0.87 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF879-201 - 563 2.1e-14 53.0 85.7 8 13 0.0062 4.6 7.1 0.3 7 26 402 421 399 422 0.93 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF879-201 - 563 2.1e-14 53.0 85.7 9 13 0.0044 3.3 7.6 0.1 5 26 428 449 425 450 0.90 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF879-201 - 563 2.1e-14 53.0 85.7 10 13 0.00055 0.41 10.4 0.2 6 26 457 477 454 478 0.92 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF879-201 - 563 2.1e-14 53.0 85.7 11 13 0.61 4.6e+02 0.7 0.1 5 26 484 505 481 506 0.88 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF879-201 - 563 2.1e-14 53.0 85.7 12 13 0.016 12 5.7 0.7 6 26 513 533 510 534 0.93 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF879-201 - 563 2.1e-14 53.0 85.7 13 13 0.00063 0.47 10.3 0.3 5 24 540 559 537 561 0.91 zinc-finger C2H2-type zf_UBZ PF18439.1 32 ZNF879-201 - 563 6.3e-12 44.9 54.1 1 13 0.036 27 4.5 0.8 2 20 203 222 202 223 0.82 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF879-201 - 563 6.3e-12 44.9 54.1 2 13 0.0024 1.8 8.2 0.1 3 20 232 250 230 251 0.90 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF879-201 - 563 6.3e-12 44.9 54.1 3 13 0.0025 1.9 8.2 0.1 3 15 260 272 258 279 0.81 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF879-201 - 563 6.3e-12 44.9 54.1 4 13 0.0031 2.3 7.9 0.1 3 20 288 306 286 307 0.82 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF879-201 - 563 6.3e-12 44.9 54.1 5 13 0.13 99 2.7 0.9 3 14 316 327 314 335 0.80 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF879-201 - 563 6.3e-12 44.9 54.1 6 13 0.04 30 4.3 0.1 3 14 344 355 342 360 0.82 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF879-201 - 563 6.3e-12 44.9 54.1 7 13 0.057 42 3.8 0.1 3 15 372 384 370 391 0.82 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF879-201 - 563 6.3e-12 44.9 54.1 8 13 0.00097 0.72 9.5 0.1 3 21 400 419 398 419 0.89 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF879-201 - 563 6.3e-12 44.9 54.1 9 13 0.046 34 4.1 0.1 3 13 428 438 426 442 0.88 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF879-201 - 563 6.3e-12 44.9 54.1 10 13 0.0026 1.9 8.1 0.1 3 20 456 474 454 475 0.81 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF879-201 - 563 6.3e-12 44.9 54.1 11 13 0.054 40 3.9 0.2 3 21 484 503 482 503 0.87 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF879-201 - 563 6.3e-12 44.9 54.1 12 13 0.12 88 2.8 0.0 3 20 512 530 510 531 0.85 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF879-201 - 563 6.3e-12 44.9 54.1 13 13 0.0011 0.8 9.4 0.2 3 21 540 559 538 559 0.87 Ubiquitin-Binding Zinc Finger XPA_N PF01286.18 32 ZNF879-201 - 563 8.4e-12 44.9 55.9 1 13 0.072 53 4.0 0.1 3 14 205 216 204 222 0.88 XPA protein N-terminal XPA_N PF01286.18 32 ZNF879-201 - 563 8.4e-12 44.9 55.9 2 13 0.0098 7.3 6.7 0.5 3 14 233 244 232 249 0.92 XPA protein N-terminal XPA_N PF01286.18 32 ZNF879-201 - 563 8.4e-12 44.9 55.9 3 13 0.044 33 4.6 0.1 3 11 261 269 259 272 0.88 XPA protein N-terminal XPA_N PF01286.18 32 ZNF879-201 - 563 8.4e-12 44.9 55.9 4 13 0.0013 1 9.5 0.2 3 14 289 300 287 306 0.87 XPA protein N-terminal XPA_N PF01286.18 32 ZNF879-201 - 563 8.4e-12 44.9 55.9 5 13 0.044 33 4.6 0.4 3 12 317 326 315 334 0.87 XPA protein N-terminal XPA_N PF01286.18 32 ZNF879-201 - 563 8.4e-12 44.9 55.9 6 13 0.051 38 4.4 0.0 3 12 345 354 343 364 0.80 XPA protein N-terminal XPA_N PF01286.18 32 ZNF879-201 - 563 8.4e-12 44.9 55.9 7 13 0.12 93 3.2 0.2 3 11 373 381 371 383 0.88 XPA protein N-terminal XPA_N PF01286.18 32 ZNF879-201 - 563 8.4e-12 44.9 55.9 8 13 0.0035 2.6 8.2 0.2 4 14 402 412 399 415 0.92 XPA protein N-terminal XPA_N PF01286.18 32 ZNF879-201 - 563 8.4e-12 44.9 55.9 9 13 0.02 15 5.7 0.1 3 11 429 437 427 439 0.89 XPA protein N-terminal XPA_N PF01286.18 32 ZNF879-201 - 563 8.4e-12 44.9 55.9 10 13 0.0095 7.1 6.8 0.2 3 12 457 466 455 467 0.88 XPA protein N-terminal XPA_N PF01286.18 32 ZNF879-201 - 563 8.4e-12 44.9 55.9 11 13 0.02 15 5.8 0.2 3 14 485 496 483 499 0.92 XPA protein N-terminal XPA_N PF01286.18 32 ZNF879-201 - 563 8.4e-12 44.9 55.9 12 13 0.035 26 4.9 0.1 3 14 513 524 511 530 0.84 XPA protein N-terminal XPA_N PF01286.18 32 ZNF879-201 - 563 8.4e-12 44.9 55.9 13 13 0.001 0.75 9.9 0.3 3 14 541 552 539 558 0.87 XPA protein N-terminal zf-trcl PF13451.6 48 ZNF879-201 - 563 5.9e-09 35.7 50.4 1 12 0.47 3.5e+02 1.2 5.8 5 45 204 243 201 246 0.66 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF879-201 - 563 5.9e-09 35.7 50.4 2 12 0.00093 0.7 9.8 0.1 3 18 258 273 256 275 0.91 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF879-201 - 563 5.9e-09 35.7 50.4 3 12 0.032 24 4.9 0.2 3 14 286 297 284 299 0.87 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF879-201 - 563 5.9e-09 35.7 50.4 4 12 0.06 45 4.0 0.1 3 14 314 325 312 327 0.87 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF879-201 - 563 5.9e-09 35.7 50.4 5 12 0.053 39 4.2 0.1 3 15 342 354 340 356 0.89 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF879-201 - 563 5.9e-09 35.7 50.4 6 12 0.067 50 3.9 0.1 3 16 370 383 368 386 0.84 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF879-201 - 563 5.9e-09 35.7 50.4 7 12 0.032 24 4.9 0.1 3 14 398 409 396 413 0.88 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF879-201 - 563 5.9e-09 35.7 50.4 8 12 0.0058 4.3 7.3 0.1 3 17 426 440 424 442 0.88 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF879-201 - 563 5.9e-09 35.7 50.4 9 12 0.024 18 5.3 0.1 3 14 454 465 452 470 0.89 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF879-201 - 563 5.9e-09 35.7 50.4 10 12 0.039 29 4.7 0.2 3 14 482 493 478 497 0.82 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF879-201 - 563 5.9e-09 35.7 50.4 11 12 0.071 53 3.8 0.1 3 14 510 521 508 525 0.88 Probable zinc-ribbon domain zf-trcl PF13451.6 48 ZNF879-201 - 563 5.9e-09 35.7 50.4 12 12 0.016 12 5.9 0.1 3 14 538 549 536 553 0.86 Probable zinc-ribbon domain zinc_ribbon_15 PF17032.5 86 ZNF879-201 - 563 3.2e-08 34.2 54.1 1 7 0.0027 2 9.2 4.1 32 78 198 244 184 247 0.86 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF879-201 - 563 3.2e-08 34.2 54.1 2 7 0.00063 0.47 11.2 5.3 30 76 224 270 205 275 0.91 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF879-201 - 563 3.2e-08 34.2 54.1 3 7 0.0017 1.3 9.8 2.9 30 76 280 326 270 330 0.84 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF879-201 - 563 3.2e-08 34.2 54.1 4 7 0.0066 4.9 8.0 1.5 27 76 333 382 328 387 0.85 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF879-201 - 563 3.2e-08 34.2 54.1 5 7 0.00051 0.38 11.5 1.5 30 74 392 436 383 442 0.86 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF879-201 - 563 3.2e-08 34.2 54.1 6 7 0.0042 3.2 8.6 2.8 32 78 450 496 444 501 0.84 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF879-201 - 563 3.2e-08 34.2 54.1 7 7 0.00022 0.16 12.7 1.6 29 78 503 552 498 555 0.87 zinc-ribbon family # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF879-201.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF879-201.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF879-201.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF879-201.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF879-201.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:15:33 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF879-202.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF879-202.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF879-202.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF879-202.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF879-202.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:15:33 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF879-203.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF879-203.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF879-203.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF879-203.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF879-203.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:15:33 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF879-204.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF879-204.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF879-204.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF879-204.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF879-204.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:15:34 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- KRAB PF01352.27 42 ZNF880-201 - 98 9.7e-25 86.0 0.0 1 1 1e-28 1.8e-24 85.1 0.0 2 42 7 47 6 47 0.98 KRAB box # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF880-201.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF880-201.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF880-201.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF880-201.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF880-201.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:15:34 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZNF880-202 - 577 8.7e-103 332.6 120.4 1 14 3.1e-06 0.0022 18.4 0.2 9 26 206 223 203 223 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF880-202 - 577 8.7e-103 332.6 120.4 2 14 5e-11 3.5e-08 33.5 1.4 1 25 226 250 226 251 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF880-202 - 577 8.7e-103 332.6 120.4 3 14 2e-11 1.4e-08 34.8 1.6 2 25 255 278 255 279 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF880-202 - 577 8.7e-103 332.6 120.4 4 14 1.7e-09 1.2e-06 28.7 3.2 1 25 282 306 282 307 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF880-202 - 577 8.7e-103 332.6 120.4 5 14 9.9e-11 6.8e-08 32.6 2.2 1 25 310 334 310 334 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF880-202 - 577 8.7e-103 332.6 120.4 6 14 5e-09 3.4e-06 27.2 0.2 1 25 338 362 338 363 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF880-202 - 577 8.7e-103 332.6 120.4 7 14 5.8e-12 4e-09 36.5 4.0 1 26 366 391 366 391 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF880-202 - 577 8.7e-103 332.6 120.4 8 14 1.3e-08 9.2e-06 25.9 1.7 2 24 395 417 395 418 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF880-202 - 577 8.7e-103 332.6 120.4 9 14 2e-10 1.4e-07 31.6 1.1 1 26 422 447 422 447 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF880-202 - 577 8.7e-103 332.6 120.4 10 14 1.8e-11 1.3e-08 34.9 0.8 1 26 450 475 450 475 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF880-202 - 577 8.7e-103 332.6 120.4 11 14 7.4e-10 5.1e-07 29.8 5.4 1 26 478 503 478 503 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF880-202 - 577 8.7e-103 332.6 120.4 12 14 2.7e-09 1.9e-06 28.1 2.7 1 26 506 531 506 531 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF880-202 - 577 8.7e-103 332.6 120.4 13 14 3.2e-10 2.2e-07 31.0 3.8 2 26 535 559 534 559 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF880-202 - 577 8.7e-103 332.6 120.4 14 14 0.00064 0.44 11.1 0.7 1 15 562 576 562 577 0.93 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZNF880-202 - 577 1.9e-75 245.3 126.2 1 13 3.8e-10 2.6e-07 30.7 0.7 1 23 212 234 212 234 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF880-202 - 577 1.9e-75 245.3 126.2 2 13 2.2e-08 1.5e-05 25.2 1.5 1 23 240 262 240 262 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF880-202 - 577 1.9e-75 245.3 126.2 3 13 9.1e-09 6.3e-06 26.4 5.6 1 23 268 290 268 290 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF880-202 - 577 1.9e-75 245.3 126.2 4 13 1.6e-09 1.1e-06 28.8 1.3 1 23 296 318 296 318 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF880-202 - 577 1.9e-75 245.3 126.2 5 13 4.6e-06 0.0032 17.8 0.0 1 23 324 346 324 346 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF880-202 - 577 1.9e-75 245.3 126.2 6 13 1e-09 7.1e-07 29.3 3.0 1 23 352 374 352 374 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF880-202 - 577 1.9e-75 245.3 126.2 7 13 7.3e-06 0.005 17.2 8.7 1 23 380 402 380 402 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF880-202 - 577 1.9e-75 245.3 126.2 8 13 4.1e-08 2.8e-05 24.3 0.5 1 23 408 430 408 430 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF880-202 - 577 1.9e-75 245.3 126.2 9 13 6e-05 0.042 14.3 4.3 1 23 436 458 436 458 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF880-202 - 577 1.9e-75 245.3 126.2 10 13 5.6e-09 3.8e-06 27.0 1.6 1 23 464 486 464 486 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF880-202 - 577 1.9e-75 245.3 126.2 11 13 3.5e-07 0.00024 21.4 7.0 1 23 492 514 492 514 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF880-202 - 577 1.9e-75 245.3 126.2 12 13 1.6e-07 0.00011 22.5 3.0 1 23 520 542 520 542 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF880-202 - 577 1.9e-75 245.3 126.2 13 13 6.9e-09 4.8e-06 26.7 4.0 1 23 548 570 548 570 0.99 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZNF880-202 - 577 1.2e-35 119.0 118.9 1 13 6e-06 0.0041 17.8 0.6 1 23 212 234 212 235 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF880-202 - 577 1.2e-35 119.0 118.9 2 13 0.00011 0.073 13.9 1.1 1 23 240 262 240 263 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF880-202 - 577 1.2e-35 119.0 118.9 3 13 8.9e-05 0.062 14.2 4.2 1 23 268 290 268 291 0.87 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF880-202 - 577 1.2e-35 119.0 118.9 4 13 4.9e-06 0.0034 18.1 1.0 1 23 296 318 296 319 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF880-202 - 577 1.2e-35 119.0 118.9 5 13 7.6e-05 0.053 14.4 0.1 1 23 324 346 324 347 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF880-202 - 577 1.2e-35 119.0 118.9 6 13 1.3e-05 0.0093 16.7 1.7 1 23 352 374 352 375 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF880-202 - 577 1.2e-35 119.0 118.9 7 13 0.0042 2.9 9.0 7.1 1 23 380 402 380 403 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF880-202 - 577 1.2e-35 119.0 118.9 8 13 7.1e-06 0.0049 17.6 0.6 1 23 408 430 408 431 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF880-202 - 577 1.2e-35 119.0 118.9 9 13 0.0015 1 10.4 3.6 1 23 436 458 436 459 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF880-202 - 577 1.2e-35 119.0 118.9 10 13 2.9e-05 0.02 15.7 0.7 1 23 464 486 464 487 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF880-202 - 577 1.2e-35 119.0 118.9 11 13 0.00074 0.51 11.3 5.7 1 23 492 514 492 515 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF880-202 - 577 1.2e-35 119.0 118.9 12 13 6.1e-05 0.042 14.7 2.4 1 23 520 542 520 543 0.91 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF880-202 - 577 1.2e-35 119.0 118.9 13 13 7.9e-05 0.055 14.3 2.1 1 23 548 570 548 571 0.93 C2H2-type zinc finger KRAB PF01352.27 42 ZNF880-202 - 577 1.8e-23 81.9 0.0 1 1 4.7e-26 3.3e-23 81.1 0.0 2 42 7 47 6 47 0.98 KRAB box Zn-ribbon_8 PF09723.10 40 ZNF880-202 - 577 1.8e-18 66.4 76.7 1 13 3.6 2.5e+03 -1.3 0.2 7 19 185 197 184 204 0.80 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF880-202 - 577 1.8e-18 66.4 76.7 2 13 1.1e-05 0.0074 16.4 2.4 6 38 212 251 211 253 0.90 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF880-202 - 577 1.8e-18 66.4 76.7 3 13 5.4e-05 0.037 14.1 4.2 6 34 240 275 239 279 0.91 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF880-202 - 577 1.8e-18 66.4 76.7 4 13 0.0019 1.3 9.2 0.6 6 17 268 279 267 289 0.84 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF880-202 - 577 1.8e-18 66.4 76.7 5 13 7.8e-07 0.00054 20.0 2.2 6 34 296 331 295 334 0.92 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF880-202 - 577 1.8e-18 66.4 76.7 6 13 3.2e-06 0.0022 18.1 3.5 6 34 352 387 351 393 0.91 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF880-202 - 577 1.8e-18 66.4 76.7 7 13 0.00045 0.31 11.2 8.3 6 36 380 417 379 420 0.91 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF880-202 - 577 1.8e-18 66.4 76.7 8 13 0.015 11 6.3 0.7 6 16 408 418 407 424 0.89 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF880-202 - 577 1.8e-18 66.4 76.7 9 13 0.00012 0.084 13.0 4.8 6 38 436 475 435 476 0.90 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF880-202 - 577 1.8e-18 66.4 76.7 10 13 0.00047 0.33 11.1 5.5 6 34 464 499 463 501 0.89 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF880-202 - 577 1.8e-18 66.4 76.7 11 13 0.02 14 5.9 0.6 6 17 492 503 490 514 0.83 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF880-202 - 577 1.8e-18 66.4 76.7 12 13 2.3e-05 0.016 15.3 5.4 6 38 520 559 519 560 0.90 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZNF880-202 - 577 1.8e-18 66.4 76.7 13 13 0.0017 1.2 9.3 0.7 6 17 548 559 546 567 0.87 Zinc ribbon domain zf-C2H2_6 PF13912.6 27 ZNF880-202 - 577 3.1e-18 65.3 108.3 1 13 0.00054 0.37 10.8 0.5 2 12 212 222 212 234 0.83 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF880-202 - 577 3.1e-18 65.3 108.3 2 13 0.0005 0.34 11.0 0.2 2 14 240 252 240 262 0.89 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF880-202 - 577 3.1e-18 65.3 108.3 3 13 0.082 57 3.9 7.9 2 12 268 278 268 289 0.80 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF880-202 - 577 3.1e-18 65.3 108.3 4 13 0.002 1.4 9.0 3.5 2 13 296 307 296 317 0.84 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF880-202 - 577 3.1e-18 65.3 108.3 5 13 6.7e-05 0.046 13.7 0.6 2 21 324 343 324 346 0.92 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF880-202 - 577 3.1e-18 65.3 108.3 6 13 0.0008 0.56 10.3 0.6 2 13 352 363 351 374 0.83 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF880-202 - 577 3.1e-18 65.3 108.3 7 13 0.00038 0.26 11.3 1.6 2 12 380 390 380 391 0.95 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF880-202 - 577 3.1e-18 65.3 108.3 8 13 0.0011 0.75 9.9 1.0 2 20 408 426 408 430 0.83 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF880-202 - 577 3.1e-18 65.3 108.3 9 13 0.0034 2.3 8.3 0.6 2 12 436 446 436 454 0.95 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF880-202 - 577 3.1e-18 65.3 108.3 10 13 0.0012 0.84 9.7 0.3 2 17 464 479 464 487 0.78 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF880-202 - 577 3.1e-18 65.3 108.3 11 13 0.03 21 5.3 8.1 2 12 492 502 492 513 0.85 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF880-202 - 577 3.1e-18 65.3 108.3 12 13 0.00076 0.52 10.4 1.6 2 12 520 530 519 531 0.93 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF880-202 - 577 3.1e-18 65.3 108.3 13 13 0.0041 2.8 8.0 0.9 2 17 548 563 548 571 0.78 C2H2-type zinc finger zf-C2H2_11 PF16622.5 29 ZNF880-202 - 577 4.4e-13 48.7 62.6 1 13 0.069 48 3.8 0.0 5 26 212 233 209 234 0.89 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF880-202 - 577 4.4e-13 48.7 62.6 2 13 0.0073 5 7.0 0.5 5 26 240 261 237 262 0.92 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF880-202 - 577 4.4e-13 48.7 62.6 3 13 0.0042 2.9 7.7 0.4 5 26 268 289 265 290 0.90 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF880-202 - 577 4.4e-13 48.7 62.6 4 13 0.0079 5.4 6.9 0.0 5 26 296 317 293 318 0.91 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF880-202 - 577 4.4e-13 48.7 62.6 5 13 0.0068 4.7 7.1 0.0 5 26 324 345 321 346 0.89 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF880-202 - 577 4.4e-13 48.7 62.6 6 13 0.008 5.5 6.8 0.8 5 26 352 373 351 374 0.94 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF880-202 - 577 4.4e-13 48.7 62.6 7 13 1.1 7.6e+02 -0.0 1.9 6 26 381 401 378 402 0.81 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF880-202 - 577 4.4e-13 48.7 62.6 8 13 0.21 1.4e+02 2.3 0.3 5 14 408 417 405 430 0.75 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF880-202 - 577 4.4e-13 48.7 62.6 9 13 0.077 53 3.7 0.4 5 24 436 455 433 457 0.90 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF880-202 - 577 4.4e-13 48.7 62.6 10 13 0.0042 2.9 7.7 0.0 5 26 464 485 461 486 0.91 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF880-202 - 577 4.4e-13 48.7 62.6 11 13 0.0035 2.4 8.0 1.6 5 26 492 513 489 514 0.94 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF880-202 - 577 4.4e-13 48.7 62.6 12 13 1.5e-05 0.01 15.6 0.2 3 26 518 541 517 542 0.93 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZNF880-202 - 577 4.4e-13 48.7 62.6 13 13 0.0021 1.5 8.7 0.1 5 26 548 569 545 570 0.91 zinc-finger C2H2-type zf-C2H2_jaz PF12171.8 27 ZNF880-202 - 577 9e-10 38.6 76.7 1 13 4.2e-06 0.0029 17.9 0.5 2 22 212 232 211 232 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF880-202 - 577 9e-10 38.6 76.7 2 13 0.018 13 6.3 0.1 2 22 240 260 239 260 0.91 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF880-202 - 577 9e-10 38.6 76.7 3 13 0.17 1.2e+02 3.1 1.0 2 20 268 286 267 286 0.85 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF880-202 - 577 9e-10 38.6 76.7 4 13 0.009 6.2 7.2 0.5 2 22 296 316 295 316 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF880-202 - 577 9e-10 38.6 76.7 5 13 0.015 11 6.5 0.0 2 21 324 343 323 344 0.88 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF880-202 - 577 9e-10 38.6 76.7 6 13 0.56 3.9e+02 1.5 1.1 3 22 353 372 352 372 0.86 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF880-202 - 577 9e-10 38.6 76.7 7 13 0.2 1.4e+02 2.9 2.1 2 12 380 390 379 398 0.85 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF880-202 - 577 9e-10 38.6 76.7 8 13 0.36 2.5e+02 2.1 0.1 2 20 408 426 407 428 0.80 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF880-202 - 577 9e-10 38.6 76.7 9 13 0.00032 0.22 11.8 0.5 2 22 436 456 435 456 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF880-202 - 577 9e-10 38.6 76.7 10 13 0.0096 6.6 7.1 0.2 2 20 464 482 463 483 0.95 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF880-202 - 577 9e-10 38.6 76.7 11 13 0.026 18 5.8 2.0 2 20 492 510 491 512 0.90 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF880-202 - 577 9e-10 38.6 76.7 12 13 0.012 8.5 6.8 1.9 2 22 520 540 519 540 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF880-202 - 577 9e-10 38.6 76.7 13 13 0.016 11 6.4 0.6 2 20 548 566 547 567 0.95 Zinc-finger double-stranded RNA-binding zinc_ribbon_15 PF17032.5 86 ZNF880-202 - 577 8.2e-08 32.9 59.4 1 11 0.55 3.8e+02 1.9 0.8 47 78 193 224 173 227 0.57 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF880-202 - 577 8.2e-08 32.9 59.4 2 11 0.0015 1 10.1 2.3 35 74 209 248 203 253 0.86 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF880-202 - 577 8.2e-08 32.9 59.4 3 11 0.00068 0.47 11.2 1.2 30 79 232 281 227 286 0.85 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF880-202 - 577 8.2e-08 32.9 59.4 4 11 0.00084 0.58 10.9 2.4 32 78 262 308 257 310 0.86 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF880-202 - 577 8.2e-08 32.9 59.4 5 11 0.00053 0.36 11.6 2.3 31 75 289 333 282 337 0.86 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF880-202 - 577 8.2e-08 32.9 59.4 6 11 0.00012 0.084 13.6 3.5 32 79 346 393 341 398 0.87 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF880-202 - 577 8.2e-08 32.9 59.4 7 11 0.044 31 5.4 3.7 22 76 392 446 390 450 0.87 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF880-202 - 577 8.2e-08 32.9 59.4 8 11 0.0012 0.8 10.5 1.3 34 79 432 477 425 482 0.85 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF880-202 - 577 8.2e-08 32.9 59.4 9 11 0.0035 2.4 8.9 2.2 33 78 459 504 450 510 0.86 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF880-202 - 577 8.2e-08 32.9 59.4 10 11 0.00025 0.17 12.6 2.8 32 77 486 531 482 534 0.86 zinc-ribbon family zinc_ribbon_15 PF17032.5 86 ZNF880-202 - 577 8.2e-08 32.9 59.4 11 11 0.00033 0.23 12.2 2.5 31 79 513 561 509 565 0.83 zinc-ribbon family XPA_N PF01286.18 32 ZNF880-202 - 577 4.1e-07 29.9 54.8 1 13 0.024 17 5.6 0.3 3 14 213 224 211 227 0.91 XPA protein N-terminal XPA_N PF01286.18 32 ZNF880-202 - 577 4.1e-07 29.9 54.8 2 13 0.049 34 4.6 0.0 3 12 241 250 239 257 0.86 XPA protein N-terminal XPA_N PF01286.18 32 ZNF880-202 - 577 4.1e-07 29.9 54.8 3 13 0.032 22 5.2 0.0 3 13 269 279 267 288 0.79 XPA protein N-terminal XPA_N PF01286.18 32 ZNF880-202 - 577 4.1e-07 29.9 54.8 4 13 0.09 62 3.7 0.1 3 11 297 305 295 307 0.87 XPA protein N-terminal XPA_N PF01286.18 32 ZNF880-202 - 577 4.1e-07 29.9 54.8 5 13 0.011 7.7 6.6 0.1 3 12 325 334 323 336 0.89 XPA protein N-terminal XPA_N PF01286.18 32 ZNF880-202 - 577 4.1e-07 29.9 54.8 6 13 0.32 2.2e+02 2.0 0.1 3 11 353 361 352 363 0.87 XPA protein N-terminal XPA_N PF01286.18 32 ZNF880-202 - 577 4.1e-07 29.9 54.8 7 13 0.054 37 4.5 0.7 3 13 381 391 379 399 0.79 XPA protein N-terminal XPA_N PF01286.18 32 ZNF880-202 - 577 4.1e-07 29.9 54.8 8 13 0.014 9.6 6.4 1.1 3 13 409 419 407 421 0.90 XPA protein N-terminal XPA_N PF01286.18 32 ZNF880-202 - 577 4.1e-07 29.9 54.8 9 13 0.18 1.3e+02 2.8 0.2 3 11 437 445 435 447 0.87 XPA protein N-terminal XPA_N PF01286.18 32 ZNF880-202 - 577 4.1e-07 29.9 54.8 10 13 0.0094 6.5 6.9 0.1 3 12 465 474 463 483 0.85 XPA protein N-terminal XPA_N PF01286.18 32 ZNF880-202 - 577 4.1e-07 29.9 54.8 11 13 0.13 90 3.2 0.1 3 12 493 502 491 510 0.83 XPA protein N-terminal XPA_N PF01286.18 32 ZNF880-202 - 577 4.1e-07 29.9 54.8 12 13 0.036 25 5.0 0.3 3 18 521 536 520 539 0.81 XPA protein N-terminal XPA_N PF01286.18 32 ZNF880-202 - 577 4.1e-07 29.9 54.8 13 13 0.043 30 4.8 0.1 3 12 549 558 547 567 0.85 XPA protein N-terminal zf_UBZ PF18439.1 32 ZNF880-202 - 577 5.6e-07 29.1 58.5 1 13 0.012 8.1 6.1 0.1 3 20 212 230 210 231 0.83 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF880-202 - 577 5.6e-07 29.1 58.5 2 13 0.081 56 3.5 0.1 3 12 240 249 238 258 0.86 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF880-202 - 577 5.6e-07 29.1 58.5 3 13 0.023 16 5.2 0.3 3 15 268 280 266 287 0.81 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF880-202 - 577 5.6e-07 29.1 58.5 4 13 0.022 15 5.3 0.1 3 15 296 308 294 315 0.79 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF880-202 - 577 5.6e-07 29.1 58.5 5 13 0.017 12 5.6 0.0 3 13 324 334 322 342 0.88 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF880-202 - 577 5.6e-07 29.1 58.5 6 13 0.022 15 5.3 0.1 3 15 352 364 350 371 0.79 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF880-202 - 577 5.6e-07 29.1 58.5 7 13 0.038 26 4.5 0.4 3 12 380 389 378 392 0.87 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF880-202 - 577 5.6e-07 29.1 58.5 8 13 0.16 1.1e+02 2.5 1.2 3 12 408 417 406 421 0.87 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF880-202 - 577 5.6e-07 29.1 58.5 9 13 0.1 71 3.1 0.3 3 21 436 455 434 459 0.77 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF880-202 - 577 5.6e-07 29.1 58.5 10 13 0.015 10 5.8 0.1 3 13 464 474 462 483 0.78 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF880-202 - 577 5.6e-07 29.1 58.5 11 13 0.0027 1.8 8.2 0.4 3 15 492 504 490 511 0.83 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF880-202 - 577 5.6e-07 29.1 58.5 12 13 0.006 4.2 7.1 0.2 2 14 519 531 518 539 0.86 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZNF880-202 - 577 5.6e-07 29.1 58.5 13 13 0.11 78 3.0 0.2 3 13 548 558 546 567 0.78 Ubiquitin-Binding Zinc Finger # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF880-202.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF880-202.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF880-202.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF880-202.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF880-202.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:15:34 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- KRAB PF01352.27 42 ZNF880-203 - 125 1.8e-24 85.1 0.0 1 1 1.7e-28 3e-24 84.4 0.0 2 42 7 47 6 47 0.98 KRAB box # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF880-203.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF880-203.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF880-203.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF880-203.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF880-203.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:15:35 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF880-204.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF880-204.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF880-204.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF880-204.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF880-204.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:15:35 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- KRAB PF01352.27 42 ZNF880-205 - 117 1.7e-24 85.2 0.0 1 1 1.5e-28 2.6e-24 84.6 0.0 2 42 7 47 6 47 0.98 KRAB box # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF880-205.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF880-205.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF880-205.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF880-205.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF880-205.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:15:36 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- KRAB PF01352.27 42 ZNF880-206 - 125 1.8e-24 85.1 0.0 1 1 1.7e-28 3e-24 84.4 0.0 2 42 7 47 6 47 0.98 KRAB box # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF880-206.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF880-206.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF880-206.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF880-206.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF880-206.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:15:36 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF883-201.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF883-201.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF883-201.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF883-201.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF883-201.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:15:36 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF883-202.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF883-202.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF883-202.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF883-202.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF883-202.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:15:37 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF883-203.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF883-203.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF883-203.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF883-203.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF883-203.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:15:37 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF883-204.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF883-204.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF883-204.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF883-204.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF883-204.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:15:37 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- Lipocalin PF00061.23 144 ZNF883-205 - 213 1.5e-16 60.9 0.4 1 1 1.1e-19 2.5e-16 60.2 0.4 77 143 135 201 114 202 0.92 Lipocalin / cytosolic fatty-acid binding protein family zf-H2C2_2 PF13465.6 26 ZNF883-205 - 213 9.4e-08 32.2 6.4 1 2 0.0038 8.5 7.0 0.7 13 25 11 23 3 24 0.88 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF883-205 - 213 9.4e-08 32.2 6.4 2 2 9.6e-10 2.1e-06 27.9 0.6 1 22 27 48 27 49 0.95 Zinc-finger double domain # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF883-205.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF883-205.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF883-205.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF883-205.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF883-205.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:15:38 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- Lipocalin PF00061.23 144 ZNF883-206 - 141 6.8e-17 62.0 0.3 1 1 9.4e-21 8.4e-17 61.7 0.3 77 143 63 129 40 130 0.92 Lipocalin / cytosolic fatty-acid binding protein family # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF883-206.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF883-206.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF883-206.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF883-206.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF883-206.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:15:38 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF883-207.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF883-207.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF883-207.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF883-207.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF883-207.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:15:38 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZNF891-201 - 544 2e-62 205.0 70.2 1 10 2.9 2.4e+03 -0.7 0.7 5 18 256 270 254 278 0.80 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF891-201 - 544 2e-62 205.0 70.2 2 10 7.4e-05 0.06 13.8 1.8 8 26 314 331 312 331 0.86 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF891-201 - 544 2e-62 205.0 70.2 3 10 3.2e-07 0.00026 21.3 1.2 7 25 340 358 338 359 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF891-201 - 544 2e-62 205.0 70.2 4 10 5.9e-13 4.8e-10 39.4 0.6 2 25 363 386 362 387 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF891-201 - 544 2e-62 205.0 70.2 5 10 5.9e-13 4.8e-10 39.4 0.5 1 26 390 415 390 415 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF891-201 - 544 2e-62 205.0 70.2 6 10 1.6e-10 1.3e-07 31.7 0.3 4 26 421 443 418 443 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF891-201 - 544 2e-62 205.0 70.2 7 10 3.2e-09 2.6e-06 27.6 0.8 1 25 446 470 446 470 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF891-201 - 544 2e-62 205.0 70.2 8 10 7.7e-13 6.3e-10 39.0 1.1 1 25 474 498 474 498 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF891-201 - 544 2e-62 205.0 70.2 9 10 2.4e-13 1.9e-10 40.7 0.1 1 25 502 526 502 527 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZNF891-201 - 544 2e-62 205.0 70.2 10 10 5 4.1e+03 -1.5 0.2 5 10 534 539 530 542 0.82 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZNF891-201 - 544 4.2e-46 152.9 58.4 1 9 7.7 6.3e+03 -2.0 0.8 5 11 215 221 214 228 0.73 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF891-201 - 544 4.2e-46 152.9 58.4 2 9 3.6e-05 0.03 14.8 0.1 1 17 320 336 320 337 0.93 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF891-201 - 544 4.2e-46 152.9 58.4 3 9 7e-10 5.7e-07 29.6 0.9 1 23 348 370 348 370 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF891-201 - 544 4.2e-46 152.9 58.4 4 9 6.6e-10 5.4e-07 29.7 0.9 1 23 376 398 376 398 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF891-201 - 544 4.2e-46 152.9 58.4 5 9 2.9e-08 2.4e-05 24.6 0.4 1 23 404 426 404 426 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF891-201 - 544 4.2e-46 152.9 58.4 6 9 8.5e-09 7e-06 26.2 1.6 1 23 432 454 432 454 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF891-201 - 544 4.2e-46 152.9 58.4 7 9 1e-08 8.5e-06 25.9 0.3 1 23 460 482 460 482 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF891-201 - 544 4.2e-46 152.9 58.4 8 9 7.6e-08 6.2e-05 23.2 0.9 1 23 488 510 488 510 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZNF891-201 - 544 4.2e-46 152.9 58.4 9 9 2.4e-06 0.002 18.5 0.2 1 23 516 538 516 538 0.95 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZNF891-201 - 544 2e-31 106.0 60.1 1 9 5.6 4.6e+03 -1.0 2.1 4 17 214 227 211 228 0.73 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF891-201 - 544 2e-31 106.0 60.1 2 9 0.0034 2.8 9.0 0.4 1 23 320 342 320 343 0.80 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF891-201 - 544 2e-31 106.0 60.1 3 9 2.7e-08 2.2e-05 24.9 0.7 1 23 348 370 348 371 0.97 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF891-201 - 544 2e-31 106.0 60.1 4 9 6.9e-08 5.6e-05 23.6 0.8 1 23 376 398 376 399 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF891-201 - 544 2e-31 106.0 60.1 5 9 1e-05 0.0084 16.9 0.4 1 23 404 426 404 427 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF891-201 - 544 2e-31 106.0 60.1 6 9 3.9e-06 0.0032 18.2 1.5 1 23 432 454 432 455 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF891-201 - 544 2e-31 106.0 60.1 7 9 9.5e-07 0.00077 20.1 0.3 1 23 460 482 460 483 0.97 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF891-201 - 544 2e-31 106.0 60.1 8 9 3.4e-06 0.0028 18.4 1.0 1 23 488 510 488 511 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZNF891-201 - 544 2e-31 106.0 60.1 9 9 4.6e-05 0.037 14.9 0.2 1 23 516 538 516 539 0.94 C2H2-type zinc finger KRAB PF01352.27 42 ZNF891-201 - 544 1.3e-24 85.5 1.2 1 1 3.2e-27 2.6e-24 84.6 1.2 1 41 42 82 42 83 0.97 KRAB box zf-C2H2_6 PF13912.6 27 ZNF891-201 - 544 1.7e-22 78.9 53.5 1 9 8.8 7.1e+03 -2.8 0.1 2 6 248 252 247 252 0.82 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF891-201 - 544 1.7e-22 78.9 53.5 2 9 2.3e-05 0.018 15.0 1.2 2 26 320 344 319 345 0.91 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF891-201 - 544 1.7e-22 78.9 53.5 3 9 5e-05 0.041 13.9 0.4 2 23 348 369 347 373 0.76 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF891-201 - 544 1.7e-22 78.9 53.5 4 9 8.5e-07 0.00069 19.5 1.6 2 24 376 398 376 401 0.96 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF891-201 - 544 1.7e-22 78.9 53.5 5 9 2.1e-05 0.017 15.1 0.6 2 24 404 426 404 429 0.88 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF891-201 - 544 1.7e-22 78.9 53.5 6 9 4.9e-05 0.04 13.9 1.9 2 24 432 454 431 457 0.87 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF891-201 - 544 1.7e-22 78.9 53.5 7 9 3.8e-06 0.0031 17.5 0.1 1 24 459 482 459 485 0.95 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF891-201 - 544 1.7e-22 78.9 53.5 8 9 0.0024 2 8.5 0.4 2 20 488 506 488 511 0.80 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZNF891-201 - 544 1.7e-22 78.9 53.5 9 9 0.0012 0.95 9.5 0.2 2 24 516 538 516 540 0.93 C2H2-type zinc finger zf-C2H2_jaz PF12171.8 27 ZNF891-201 - 544 8.3e-17 61.0 32.2 1 9 3.4 2.8e+03 -1.2 0.1 10 21 238 249 237 249 0.84 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF891-201 - 544 8.3e-17 61.0 32.2 2 9 0.23 1.9e+02 2.5 0.2 1 16 319 334 319 336 0.84 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF891-201 - 544 8.3e-17 61.0 32.2 3 9 3.7e-07 0.0003 21.0 0.3 1 24 347 370 347 370 0.96 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF891-201 - 544 8.3e-17 61.0 32.2 4 9 0.002 1.6 9.1 0.4 2 24 376 398 375 398 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF891-201 - 544 8.3e-17 61.0 32.2 5 9 0.02 16 5.9 0.0 2 22 404 424 403 424 0.91 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF891-201 - 544 8.3e-17 61.0 32.2 6 9 0.00024 0.2 12.0 0.7 2 22 432 452 431 452 0.95 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF891-201 - 544 8.3e-17 61.0 32.2 7 9 0.00023 0.19 12.1 0.0 2 24 460 482 459 482 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF891-201 - 544 8.3e-17 61.0 32.2 8 9 0.00098 0.8 10.1 0.0 2 22 488 508 487 508 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZNF891-201 - 544 8.3e-17 61.0 32.2 9 9 0.029 23 5.4 0.1 2 21 516 535 515 536 0.87 Zinc-finger double-stranded RNA-binding # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF891-201.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF891-201.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF891-201.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF891-201.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZNF891-201.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:15:39 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- SCAN PF02023.17 90 ZSCAN16-201 - 348 8.4e-43 144.1 2.8 1 1 3.2e-45 1.4e-42 143.4 2.8 2 89 38 125 37 126 0.98 SCAN domain zf-H2C2_2 PF13465.6 26 ZSCAN16-201 - 348 1.7e-29 100.9 23.2 1 5 0.00021 0.094 13.2 0.1 13 26 234 247 228 247 0.85 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZSCAN16-201 - 348 1.7e-29 100.9 23.2 2 5 1.2e-12 5.4e-10 39.2 0.6 1 24 250 273 250 275 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZSCAN16-201 - 348 1.7e-29 100.9 23.2 3 5 3e-08 1.3e-05 25.3 2.8 5 25 282 302 277 302 0.89 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZSCAN16-201 - 348 1.7e-29 100.9 23.2 4 5 1.8e-09 8.2e-07 29.2 0.2 2 21 307 326 306 329 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZSCAN16-201 - 348 1.7e-29 100.9 23.2 5 5 0.057 25 5.5 0.1 1 13 334 346 334 348 0.81 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZSCAN16-201 - 348 1.6e-24 84.9 27.9 1 4 2.1e-09 9.3e-07 29.0 3.9 1 23 236 258 236 258 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZSCAN16-201 - 348 1.6e-24 84.9 27.9 2 4 1.1e-07 4.7e-05 23.6 1.8 1 23 264 286 264 286 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZSCAN16-201 - 348 1.6e-24 84.9 27.9 3 4 2.9e-07 0.00013 22.2 0.3 1 23 292 314 292 314 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZSCAN16-201 - 348 1.6e-24 84.9 27.9 4 4 1.5e-08 6.7e-06 26.3 0.1 1 23 320 342 320 342 0.98 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZSCAN16-201 - 348 5.8e-15 54.7 26.0 1 4 1.6e-06 0.0007 20.2 2.8 1 23 236 258 236 259 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZSCAN16-201 - 348 5.8e-15 54.7 26.0 2 4 0.00027 0.12 13.2 1.4 1 23 264 286 264 287 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZSCAN16-201 - 348 5.8e-15 54.7 26.0 3 4 5.6e-06 0.0025 18.5 0.2 1 23 292 314 292 315 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZSCAN16-201 - 348 5.8e-15 54.7 26.0 4 4 8.7e-06 0.0039 17.9 0.1 1 23 320 342 320 343 0.95 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZSCAN16-201 - 348 3.7e-09 36.4 24.1 1 4 1.3e-06 0.00057 19.8 3.1 1 24 235 258 235 261 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZSCAN16-201 - 348 3.7e-09 36.4 24.1 2 4 0.021 9.5 6.3 4.2 2 11 264 273 264 286 0.85 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZSCAN16-201 - 348 3.7e-09 36.4 24.1 3 4 0.00089 0.4 10.7 0.4 2 20 292 310 292 316 0.80 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZSCAN16-201 - 348 3.7e-09 36.4 24.1 4 4 0.002 0.88 9.7 0.0 2 22 320 340 320 344 0.82 C2H2-type zinc finger zf-C2H2_jaz PF12171.8 27 ZSCAN16-201 - 348 2.3e-07 30.9 6.5 1 4 0.0003 0.13 12.5 1.8 2 24 236 258 235 258 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZSCAN16-201 - 348 2.3e-07 30.9 6.5 2 4 0.14 62 4.1 0.1 2 14 264 276 263 282 0.77 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZSCAN16-201 - 348 2.3e-07 30.9 6.5 3 4 0.004 1.8 8.9 0.0 2 22 292 312 291 312 0.90 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZSCAN16-201 - 348 2.3e-07 30.9 6.5 4 4 0.12 55 4.2 0.0 2 21 320 339 319 340 0.88 Zinc-finger double-stranded RNA-binding zf_UBZ PF18439.1 32 ZSCAN16-201 - 348 5.4e-07 29.1 10.4 1 4 0.00015 0.069 12.8 0.3 3 20 236 254 234 255 0.87 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZSCAN16-201 - 348 5.4e-07 29.1 10.4 2 4 0.0081 3.6 7.3 0.1 3 12 264 273 262 279 0.85 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZSCAN16-201 - 348 5.4e-07 29.1 10.4 3 4 0.02 8.9 6.0 0.1 3 13 292 302 290 311 0.82 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZSCAN16-201 - 348 5.4e-07 29.1 10.4 4 4 0.0068 3.1 7.5 0.1 3 17 320 335 318 347 0.81 Ubiquitin-Binding Zinc Finger XPA_N PF01286.18 32 ZSCAN16-201 - 348 1e-06 28.6 12.6 1 4 0.0016 0.73 9.9 0.7 3 14 237 248 235 253 0.90 XPA protein N-terminal XPA_N PF01286.18 32 ZSCAN16-201 - 348 1e-06 28.6 12.6 2 4 0.0032 1.4 9.0 0.1 3 12 265 274 263 280 0.88 XPA protein N-terminal XPA_N PF01286.18 32 ZSCAN16-201 - 348 1e-06 28.6 12.6 3 4 0.023 10 6.2 0.3 3 11 293 301 291 303 0.88 XPA protein N-terminal XPA_N PF01286.18 32 ZSCAN16-201 - 348 1e-06 28.6 12.6 4 4 0.0025 1.1 9.3 0.1 3 14 321 332 319 335 0.89 XPA protein N-terminal # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN16-201.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN16-201.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN16-201.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN16-201.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN16-201.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:15:39 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- SCAN PF02023.17 90 ZSCAN18-201 - 510 8.9e-35 118.4 0.7 1 1 4.5e-38 1.6e-34 117.6 0.7 2 89 46 133 45 134 0.97 SCAN domain # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN18-201.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN18-201.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN18-201.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN18-201.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN18-201.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:15:39 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN18-202.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN18-202.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN18-202.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN18-202.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN18-202.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:15:40 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN18-203.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN18-203.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN18-203.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN18-203.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN18-203.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:15:40 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- SCAN PF02023.17 90 ZSCAN18-204 - 279 3.4e-35 119.7 0.7 1 1 3.1e-39 5.6e-35 119.0 0.7 2 89 46 133 45 134 0.97 SCAN domain # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN18-204.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN18-204.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN18-204.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN18-204.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN18-204.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:15:40 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN18-205.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN18-205.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN18-205.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN18-205.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN18-205.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:15:41 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN18-207.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN18-207.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN18-207.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN18-207.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN18-207.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:15:41 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN18-208.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN18-208.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN18-208.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN18-208.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN18-208.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:15:41 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN18-209.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN18-209.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN18-209.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN18-209.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN18-209.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:15:42 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN18-210.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN18-210.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN18-210.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN18-210.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN18-210.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:15:42 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- SCAN PF02023.17 90 ZSCAN18-211 - 197 1.9e-35 120.6 0.7 1 1 1.5e-39 2.6e-35 120.1 0.7 2 89 46 133 45 134 0.97 SCAN domain # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN18-211.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN18-211.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN18-211.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN18-211.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN18-211.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:15:43 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- SCAN PF02023.17 90 ZSCAN18-212 - 566 1.1e-34 118.1 0.7 1 1 5.3e-38 1.9e-34 117.3 0.7 2 89 102 189 101 190 0.97 SCAN domain # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN18-212.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN18-212.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN18-212.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN18-212.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN18-212.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:15:43 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN18-214.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN18-214.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN18-214.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN18-214.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN18-214.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:15:43 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN18-215.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN18-215.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN18-215.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN18-215.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN18-215.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:15:44 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN18-216.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN18-216.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN18-216.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN18-216.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN18-216.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:15:44 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- SCAN PF02023.17 90 ZSCAN18-217 - 510 8.9e-35 118.4 0.7 1 1 4.5e-38 1.6e-34 117.6 0.7 2 89 46 133 45 134 0.97 SCAN domain # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN18-217.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN18-217.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN18-217.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN18-217.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN18-217.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:15:44 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZSCAN20-201 - 1043 3.7e-66 216.8 73.9 1 13 1.6 1.7e+03 -0.3 0.1 19 26 535 542 534 542 0.88 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZSCAN20-201 - 1043 3.7e-66 216.8 73.9 2 13 0.00026 0.27 11.7 0.2 12 25 707 720 699 721 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZSCAN20-201 - 1043 3.7e-66 216.8 73.9 3 13 1.9e-09 2e-06 27.9 1.1 4 25 727 748 724 749 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZSCAN20-201 - 1043 3.7e-66 216.8 73.9 4 13 3.2e-11 3.4e-08 33.5 0.4 1 25 752 776 752 777 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZSCAN20-201 - 1043 3.7e-66 216.8 73.9 5 13 8.6e-09 9.1e-06 25.9 0.2 1 25 780 804 780 805 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZSCAN20-201 - 1043 3.7e-66 216.8 73.9 6 13 0.077 81 3.9 0.0 1 18 808 825 808 826 0.87 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZSCAN20-201 - 1043 3.7e-66 216.8 73.9 7 13 0.00017 0.17 12.3 0.3 11 25 871 885 866 886 0.88 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZSCAN20-201 - 1043 3.7e-66 216.8 73.9 8 13 3.9e-11 4.1e-08 33.3 0.2 1 25 889 913 889 914 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZSCAN20-201 - 1043 3.7e-66 216.8 73.9 9 13 4.1e-09 4.3e-06 26.9 1.8 2 25 918 941 917 942 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZSCAN20-201 - 1043 3.7e-66 216.8 73.9 10 13 2.9e-09 3e-06 27.4 1.5 3 24 947 968 945 969 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZSCAN20-201 - 1043 3.7e-66 216.8 73.9 11 13 4.9e-10 5.2e-07 29.8 1.8 1 25 973 997 973 998 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZSCAN20-201 - 1043 3.7e-66 216.8 73.9 12 13 2.2e-10 2.3e-07 30.9 0.2 5 26 1005 1026 1001 1026 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZSCAN20-201 - 1043 3.7e-66 216.8 73.9 13 13 4.6 4.8e+03 -1.7 0.6 1 11 1029 1039 1029 1041 0.81 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZSCAN20-201 - 1043 1.4e-60 198.5 81.1 1 10 1e-06 0.0011 19.3 3.8 1 23 710 732 710 732 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZSCAN20-201 - 1043 1.4e-60 198.5 81.1 2 10 7.5e-09 7.9e-06 26.1 1.0 1 23 738 760 738 760 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZSCAN20-201 - 1043 1.4e-60 198.5 81.1 3 10 6.3e-09 6.6e-06 26.3 1.7 1 23 766 788 766 788 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZSCAN20-201 - 1043 1.4e-60 198.5 81.1 4 10 3e-09 3.2e-06 27.3 0.8 1 23 794 816 794 816 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZSCAN20-201 - 1043 1.4e-60 198.5 81.1 5 10 7.4e-09 7.8e-06 26.1 0.3 1 23 875 897 875 897 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZSCAN20-201 - 1043 1.4e-60 198.5 81.1 6 10 6.1e-09 6.5e-06 26.3 0.5 1 23 903 925 903 925 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZSCAN20-201 - 1043 1.4e-60 198.5 81.1 7 10 5.5e-08 5.8e-05 23.3 2.5 1 23 931 953 931 953 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZSCAN20-201 - 1043 1.4e-60 198.5 81.1 8 10 1.7e-08 1.8e-05 24.9 1.1 1 23 959 981 959 981 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZSCAN20-201 - 1043 1.4e-60 198.5 81.1 9 10 1.5e-08 1.6e-05 25.1 2.2 1 23 987 1009 987 1009 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZSCAN20-201 - 1043 1.4e-60 198.5 81.1 10 10 1e-07 0.00011 22.5 3.8 1 23 1015 1037 1015 1037 0.99 Zinc finger, C2H2 type SCAN PF02023.17 90 ZSCAN20-201 - 1043 3.9e-41 138.8 4.0 1 1 9.1e-44 9.6e-41 137.5 4.0 1 88 47 134 47 136 0.98 SCAN domain Myb_DNA-bind_4 PF13837.6 90 ZSCAN20-201 - 1043 1.9e-35 121.1 0.0 1 2 2.4e-19 2.5e-16 59.8 0.0 2 90 324 408 323 408 0.91 Myb/SANT-like DNA-binding domain Myb_DNA-bind_4 PF13837.6 90 ZSCAN20-201 - 1043 1.9e-35 121.1 0.0 2 2 8.2e-19 8.6e-16 58.1 0.0 2 90 484 568 483 568 0.91 Myb/SANT-like DNA-binding domain zf-C2H2_4 PF13894.6 24 ZSCAN20-201 - 1043 5.8e-29 98.3 75.2 1 11 0.00097 1 10.4 2.6 1 23 710 732 710 733 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZSCAN20-201 - 1043 5.8e-29 98.3 75.2 2 11 8.4e-06 0.0088 16.8 0.5 1 23 738 760 738 761 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZSCAN20-201 - 1043 5.8e-29 98.3 75.2 3 11 1.3e-05 0.013 16.2 1.1 1 23 766 788 766 789 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZSCAN20-201 - 1043 5.8e-29 98.3 75.2 4 11 0.0025 2.6 9.1 0.8 1 23 794 816 794 817 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZSCAN20-201 - 1043 5.8e-29 98.3 75.2 5 11 2.4 2.5e+03 -0.2 0.0 7 22 828 843 822 844 0.79 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZSCAN20-201 - 1043 5.8e-29 98.3 75.2 6 11 6.8e-06 0.0072 17.1 0.4 1 23 875 897 875 898 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZSCAN20-201 - 1043 5.8e-29 98.3 75.2 7 11 7.5e-06 0.0079 16.9 0.6 1 23 903 925 903 926 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZSCAN20-201 - 1043 5.8e-29 98.3 75.2 8 11 0.00011 0.12 13.3 2.3 1 23 931 953 931 954 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZSCAN20-201 - 1043 5.8e-29 98.3 75.2 9 11 0.00017 0.18 12.7 0.6 1 23 959 981 959 982 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZSCAN20-201 - 1043 5.8e-29 98.3 75.2 10 11 0.00013 0.14 13.1 1.8 1 23 987 1009 987 1010 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZSCAN20-201 - 1043 5.8e-29 98.3 75.2 11 11 3e-06 0.0032 18.2 1.8 1 23 1015 1037 1015 1038 0.97 C2H2-type zinc finger zf-C2H2_jaz PF12171.8 27 ZSCAN20-201 - 1043 3.4e-15 55.9 47.9 1 10 0.0073 7.7 6.9 0.5 2 22 710 730 709 730 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZSCAN20-201 - 1043 3.4e-15 55.9 47.9 2 10 0.00016 0.17 12.2 0.1 2 22 738 758 737 758 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZSCAN20-201 - 1043 3.4e-15 55.9 47.9 3 10 7.5e-05 0.079 13.3 0.2 2 22 766 786 765 786 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZSCAN20-201 - 1043 3.4e-15 55.9 47.9 4 10 0.12 1.3e+02 3.0 0.3 2 22 794 814 793 814 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZSCAN20-201 - 1043 3.4e-15 55.9 47.9 5 10 0.00091 0.96 9.8 0.0 2 22 875 895 874 895 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZSCAN20-201 - 1043 3.4e-15 55.9 47.9 6 10 1.9e-05 0.02 15.2 0.3 2 24 903 925 902 925 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZSCAN20-201 - 1043 3.4e-15 55.9 47.9 7 10 0.26 2.7e+02 2.0 0.4 2 22 931 951 930 951 0.90 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZSCAN20-201 - 1043 3.4e-15 55.9 47.9 8 10 0.0011 1.2 9.5 0.1 2 22 959 979 958 979 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZSCAN20-201 - 1043 3.4e-15 55.9 47.9 9 10 2.5 2.7e+03 -1.2 0.7 2 21 987 1006 986 1007 0.84 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZSCAN20-201 - 1043 3.4e-15 55.9 47.9 10 10 3.2e-05 0.033 14.5 1.0 2 24 1015 1037 1014 1038 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_11 PF16622.5 29 ZSCAN20-201 - 1043 7.8e-10 38.3 40.0 1 10 7.8e-05 0.082 12.7 0.0 5 26 738 759 735 760 0.93 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZSCAN20-201 - 1043 7.8e-10 38.3 40.0 2 10 0.0024 2.5 7.9 0.2 5 26 766 787 763 788 0.86 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZSCAN20-201 - 1043 7.8e-10 38.3 40.0 3 10 1.8 1.9e+03 -1.3 0.2 6 26 795 815 793 816 0.63 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZSCAN20-201 - 1043 7.8e-10 38.3 40.0 4 10 0.66 7e+02 0.1 0.0 6 23 823 840 820 842 0.90 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZSCAN20-201 - 1043 7.8e-10 38.3 40.0 5 10 0.0099 10 6.0 1.5 7 26 877 896 875 897 0.89 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZSCAN20-201 - 1043 7.8e-10 38.3 40.0 6 10 0.044 46 3.9 0.1 6 23 904 921 901 924 0.86 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZSCAN20-201 - 1043 7.8e-10 38.3 40.0 7 10 0.0008 0.84 9.4 0.4 5 16 931 942 928 952 0.81 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZSCAN20-201 - 1043 7.8e-10 38.3 40.0 8 10 0.077 81 3.1 0.1 5 13 959 967 956 980 0.83 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZSCAN20-201 - 1043 7.8e-10 38.3 40.0 9 10 0.00013 0.14 11.9 1.5 5 26 987 1008 984 1009 0.89 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZSCAN20-201 - 1043 7.8e-10 38.3 40.0 10 10 0.055 58 3.6 0.1 5 15 1015 1025 1012 1035 0.73 zinc-finger C2H2-type Myb_DNA-binding PF00249.31 46 ZSCAN20-201 - 1043 1.2e-08 35.0 0.8 1 2 5.3e-05 0.056 13.6 0.1 4 46 326 384 324 384 0.89 Myb-like DNA-binding domain Myb_DNA-binding PF00249.31 46 ZSCAN20-201 - 1043 1.2e-08 35.0 0.8 2 2 1.4e-06 0.0015 18.7 0.1 4 46 486 544 484 544 0.89 Myb-like DNA-binding domain Zn-ribbon_8 PF09723.10 40 ZSCAN20-201 - 1043 3.1e-07 30.4 51.2 1 10 0.0011 1.1 9.4 2.1 6 35 710 746 709 750 0.91 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZSCAN20-201 - 1043 3.1e-07 30.4 51.2 2 10 0.00014 0.15 12.2 2.2 6 34 738 773 736 776 0.92 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZSCAN20-201 - 1043 3.1e-07 30.4 51.2 3 10 0.00073 0.77 9.9 1.7 6 32 766 799 765 805 0.91 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZSCAN20-201 - 1043 3.1e-07 30.4 51.2 4 10 0.13 1.4e+02 2.7 0.3 6 30 794 825 792 832 0.70 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZSCAN20-201 - 1043 3.1e-07 30.4 51.2 5 10 0.0001 0.11 12.7 4.0 6 37 875 913 874 916 0.90 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZSCAN20-201 - 1043 3.1e-07 30.4 51.2 6 10 0.012 12 6.1 7.4 6 34 903 938 902 944 0.85 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZSCAN20-201 - 1043 3.1e-07 30.4 51.2 7 10 0.021 23 5.2 6.3 6 34 931 966 930 971 0.87 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZSCAN20-201 - 1043 3.1e-07 30.4 51.2 8 10 0.0015 1.6 8.9 4.0 6 34 959 994 957 994 0.92 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZSCAN20-201 - 1043 3.1e-07 30.4 51.2 9 10 0.00032 0.33 11.1 6.3 6 35 987 1023 986 1026 0.92 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZSCAN20-201 - 1043 3.1e-07 30.4 51.2 10 10 0.0027 2.8 8.1 0.5 6 19 1015 1028 1014 1036 0.80 Zinc ribbon domain # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN20-201.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN20-201.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN20-201.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN20-201.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN20-201.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:15:45 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- SCAN PF02023.17 90 ZSCAN20-202 - 433 1.1e-41 140.6 4.0 1 1 6e-45 2.7e-41 139.3 4.0 1 88 47 134 47 136 0.98 SCAN domain Myb_DNA-bind_4 PF13837.6 90 ZSCAN20-202 - 433 3.6e-17 62.5 0.0 1 1 1.6e-20 7e-17 61.6 0.0 2 90 270 354 269 354 0.91 Myb/SANT-like DNA-binding domain # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN20-202.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN20-202.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN20-202.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN20-202.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN20-202.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:15:45 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN20-203.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN20-203.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN20-203.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN20-203.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN20-203.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:15:45 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZSCAN21-201 - 473 9e-48 158.7 54.3 1 8 0.0097 6.4 7.4 0.2 11 26 273 288 268 288 0.89 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZSCAN21-201 - 473 9e-48 158.7 54.3 2 8 1.1e-11 7.4e-09 35.6 3.6 1 26 291 316 291 316 0.97 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZSCAN21-201 - 473 9e-48 158.7 54.3 3 8 0.00028 0.19 12.2 0.3 1 25 319 342 319 343 0.89 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZSCAN21-201 - 473 9e-48 158.7 54.3 4 8 3e-09 2e-06 28.0 0.3 2 25 347 370 346 370 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZSCAN21-201 - 473 9e-48 158.7 54.3 5 8 6.5e-12 4.3e-09 36.4 0.3 2 25 375 398 374 399 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZSCAN21-201 - 473 9e-48 158.7 54.3 6 8 3.1e-12 2.1e-09 37.4 1.8 1 26 402 427 402 427 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZSCAN21-201 - 473 9e-48 158.7 54.3 7 8 1e-06 0.00068 20.0 6.8 1 24 430 453 430 453 0.97 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZSCAN21-201 - 473 9e-48 158.7 54.3 8 8 0.00069 0.46 11.0 0.1 1 12 458 469 458 472 0.92 Zinc-finger double domain SCAN PF02023.17 90 ZSCAN21-201 - 473 1.3e-42 143.5 4.2 1 1 3.3e-45 2.2e-42 142.8 4.2 2 89 42 129 41 130 0.98 SCAN domain zf-C2H2 PF00096.26 23 ZSCAN21-201 - 473 4e-42 140.4 61.2 1 7 9.7e-10 6.5e-07 29.5 0.6 1 23 277 299 277 299 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZSCAN21-201 - 473 4e-42 140.4 61.2 2 7 5.8e-09 3.9e-06 27.0 3.3 1 23 305 327 305 327 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZSCAN21-201 - 473 4e-42 140.4 61.2 3 7 6.6e-06 0.0044 17.4 0.5 5 23 336 354 334 354 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZSCAN21-201 - 473 4e-42 140.4 61.2 4 7 6.9e-09 4.6e-06 26.8 0.3 1 23 360 382 360 382 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZSCAN21-201 - 473 4e-42 140.4 61.2 5 7 2.2e-08 1.5e-05 25.2 1.3 1 23 388 410 388 410 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZSCAN21-201 - 473 4e-42 140.4 61.2 6 7 5.2e-08 3.5e-05 24.0 5.7 1 23 416 438 416 438 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZSCAN21-201 - 473 4e-42 140.4 61.2 7 7 1.8e-07 0.00012 22.3 8.0 3 23 446 466 444 466 0.98 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZSCAN21-201 - 473 1.5e-21 75.2 56.5 1 7 4.5e-06 0.003 18.3 0.4 1 23 277 299 277 300 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZSCAN21-201 - 473 1.5e-21 75.2 56.5 2 7 0.00036 0.24 12.4 2.1 1 23 305 327 305 328 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZSCAN21-201 - 473 1.5e-21 75.2 56.5 3 7 0.0023 1.5 9.8 0.5 5 23 336 354 333 355 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZSCAN21-201 - 473 1.5e-21 75.2 56.5 4 7 2.4e-06 0.0016 19.1 0.2 1 23 360 382 360 383 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZSCAN21-201 - 473 1.5e-21 75.2 56.5 5 7 9.6e-06 0.0064 17.2 1.3 1 23 388 410 388 411 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZSCAN21-201 - 473 1.5e-21 75.2 56.5 6 7 0.00081 0.54 11.3 4.1 1 23 416 438 416 439 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZSCAN21-201 - 473 1.5e-21 75.2 56.5 7 7 6.5e-06 0.0043 17.8 7.5 1 23 444 466 444 467 0.95 C2H2-type zinc finger zf-C2H2_11 PF16622.5 29 ZSCAN21-201 - 473 7e-09 35.3 41.0 1 7 0.0017 1.1 9.0 0.5 7 25 279 297 277 299 0.95 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZSCAN21-201 - 473 7e-09 35.3 41.0 2 7 0.096 64 3.4 0.8 7 23 307 323 305 326 0.79 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZSCAN21-201 - 473 7e-09 35.3 41.0 3 7 3.7 2.4e+03 -1.6 0.7 8 26 335 353 335 354 0.81 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZSCAN21-201 - 473 7e-09 35.3 41.0 4 7 1.7e-07 0.00011 21.8 0.0 3 26 358 381 356 382 0.91 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZSCAN21-201 - 473 7e-09 35.3 41.0 5 7 0.0007 0.46 10.3 1.0 5 25 388 408 385 410 0.90 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZSCAN21-201 - 473 7e-09 35.3 41.0 6 7 0.012 7.8 6.4 0.2 5 26 416 437 413 438 0.90 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZSCAN21-201 - 473 7e-09 35.3 41.0 7 7 0.0016 1.1 9.1 3.7 7 25 446 464 443 466 0.92 zinc-finger C2H2-type Zn-ribbon_8 PF09723.10 40 ZSCAN21-201 - 473 3.1e-08 33.6 27.2 1 5 0.00027 0.18 12.0 1.8 6 34 277 312 276 316 0.86 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZSCAN21-201 - 473 3.1e-08 33.6 27.2 2 5 0.013 8.5 6.6 0.2 6 16 305 315 303 321 0.87 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZSCAN21-201 - 473 3.1e-08 33.6 27.2 3 5 0.0013 0.86 9.8 1.8 6 34 333 367 332 372 0.78 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZSCAN21-201 - 473 3.1e-08 33.6 27.2 4 5 0.00016 0.11 12.7 5.0 6 34 388 423 387 424 0.88 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZSCAN21-201 - 473 3.1e-08 33.6 27.2 5 5 7.4e-06 0.0049 16.9 2.3 6 34 416 451 414 456 0.92 Zinc ribbon domain # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN21-201.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN21-201.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN21-201.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN21-201.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN21-201.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:15:46 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN21-202.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN21-202.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN21-202.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN21-202.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN21-202.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:15:46 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- SCAN PF02023.17 90 ZSCAN21-203 - 450 1.1e-42 143.7 4.2 1 1 3.4e-46 2e-42 142.9 4.2 2 89 42 129 41 130 0.98 SCAN domain # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN21-203.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN21-203.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN21-203.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN21-203.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN21-203.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:15:47 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN21-204.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN21-204.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN21-204.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN21-204.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN21-204.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:15:47 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZSCAN21-205 - 436 4.3e-48 159.7 54.3 1 8 0.0085 5.8 7.5 0.2 11 26 236 251 231 251 0.89 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZSCAN21-205 - 436 4.3e-48 159.7 54.3 2 8 9.7e-12 6.7e-09 35.8 3.6 1 26 254 279 254 279 0.97 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZSCAN21-205 - 436 4.3e-48 159.7 54.3 3 8 0.00025 0.17 12.4 0.3 1 25 282 305 282 306 0.89 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZSCAN21-205 - 436 4.3e-48 159.7 54.3 4 8 2.6e-09 1.8e-06 28.1 0.3 2 25 310 333 309 333 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZSCAN21-205 - 436 4.3e-48 159.7 54.3 5 8 5.7e-12 3.9e-09 36.5 0.3 2 25 338 361 337 362 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZSCAN21-205 - 436 4.3e-48 159.7 54.3 6 8 2.7e-12 1.9e-09 37.5 1.8 1 26 365 390 365 390 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZSCAN21-205 - 436 4.3e-48 159.7 54.3 7 8 8.9e-07 0.00062 20.1 6.8 1 24 393 416 393 416 0.97 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZSCAN21-205 - 436 4.3e-48 159.7 54.3 8 8 0.00061 0.42 11.1 0.1 1 12 421 432 421 435 0.92 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZSCAN21-205 - 436 2.1e-42 141.2 61.2 1 7 8.5e-10 5.9e-07 29.6 0.6 1 23 240 262 240 262 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZSCAN21-205 - 436 2.1e-42 141.2 61.2 2 7 5.1e-09 3.5e-06 27.2 3.3 1 23 268 290 268 290 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZSCAN21-205 - 436 2.1e-42 141.2 61.2 3 7 5.7e-06 0.004 17.5 0.5 5 23 299 317 297 317 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZSCAN21-205 - 436 2.1e-42 141.2 61.2 4 7 6e-09 4.1e-06 26.9 0.3 1 23 323 345 323 345 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZSCAN21-205 - 436 2.1e-42 141.2 61.2 5 7 2e-08 1.4e-05 25.3 1.3 1 23 351 373 351 373 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZSCAN21-205 - 436 2.1e-42 141.2 61.2 6 7 4.6e-08 3.1e-05 24.2 5.7 1 23 379 401 379 401 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZSCAN21-205 - 436 2.1e-42 141.2 61.2 7 7 1.6e-07 0.00011 22.5 8.0 3 23 409 429 407 429 0.98 Zinc finger, C2H2 type SCAN PF02023.17 90 ZSCAN21-205 - 436 1.7e-22 79.0 0.1 1 1 4.5e-25 3.1e-22 78.2 0.1 2 52 42 92 41 116 0.94 SCAN domain zf-C2H2_4 PF13894.6 24 ZSCAN21-205 - 436 8.1e-22 76.0 56.5 1 7 3.9e-06 0.0027 18.4 0.4 1 23 240 262 240 263 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZSCAN21-205 - 436 8.1e-22 76.0 56.5 2 7 0.00031 0.21 12.5 2.1 1 23 268 290 268 291 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZSCAN21-205 - 436 8.1e-22 76.0 56.5 3 7 0.002 1.4 10.0 0.5 5 23 299 317 296 318 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZSCAN21-205 - 436 8.1e-22 76.0 56.5 4 7 2.1e-06 0.0014 19.2 0.2 1 23 323 345 323 346 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZSCAN21-205 - 436 8.1e-22 76.0 56.5 5 7 8.4e-06 0.0058 17.4 1.3 1 23 351 373 351 374 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZSCAN21-205 - 436 8.1e-22 76.0 56.5 6 7 0.0007 0.48 11.4 4.1 1 23 379 401 379 402 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZSCAN21-205 - 436 8.1e-22 76.0 56.5 7 7 5.7e-06 0.0039 17.9 7.5 1 23 407 429 407 430 0.95 C2H2-type zinc finger zf-C2H2_11 PF16622.5 29 ZSCAN21-205 - 436 3.8e-09 36.2 41.0 1 7 0.0015 1 9.2 0.5 7 25 242 260 240 262 0.95 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZSCAN21-205 - 436 3.8e-09 36.2 41.0 2 7 0.084 58 3.6 0.8 7 23 270 286 268 289 0.79 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZSCAN21-205 - 436 3.8e-09 36.2 41.0 3 7 3.2 2.2e+03 -1.5 0.7 8 26 298 316 298 317 0.81 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZSCAN21-205 - 436 3.8e-09 36.2 41.0 4 7 1.5e-07 0.0001 22.0 0.0 3 26 321 344 319 345 0.91 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZSCAN21-205 - 436 3.8e-09 36.2 41.0 5 7 0.00061 0.42 10.4 1.0 5 25 351 371 348 373 0.90 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZSCAN21-205 - 436 3.8e-09 36.2 41.0 6 7 0.01 7 6.5 0.2 5 26 379 400 376 401 0.90 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZSCAN21-205 - 436 3.8e-09 36.2 41.0 7 7 0.0014 0.99 9.2 3.7 7 25 409 427 406 429 0.92 zinc-finger C2H2-type Zn-ribbon_8 PF09723.10 40 ZSCAN21-205 - 436 2.7e-08 33.8 27.3 1 5 0.00023 0.16 12.1 1.8 6 34 240 275 239 279 0.86 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZSCAN21-205 - 436 2.7e-08 33.8 27.3 2 5 0.011 7.8 6.7 0.2 6 16 268 278 266 284 0.87 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZSCAN21-205 - 436 2.7e-08 33.8 27.3 3 5 0.0011 0.77 9.9 1.8 6 34 296 330 295 335 0.78 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZSCAN21-205 - 436 2.7e-08 33.8 27.3 4 5 0.00014 0.095 12.8 5.0 6 34 351 386 350 387 0.88 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZSCAN21-205 - 436 2.7e-08 33.8 27.3 5 5 6.7e-06 0.0046 17.0 2.4 6 34 379 414 377 419 0.92 Zinc ribbon domain # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN21-205.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN21-205.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN21-205.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN21-205.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN21-205.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:15:47 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZSCAN22-201 - 491 2.3e-62 204.8 49.6 1 9 0.25 2.3e+02 2.5 0.2 16 24 269 277 255 279 0.81 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZSCAN22-201 - 491 2.3e-62 204.8 49.6 2 9 3.1e-09 2.7e-06 27.5 0.5 1 25 282 306 282 307 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZSCAN22-201 - 491 2.3e-62 204.8 49.6 3 9 4.9e-09 4.4e-06 26.9 1.3 1 25 310 334 310 335 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZSCAN22-201 - 491 2.3e-62 204.8 49.6 4 9 1.9e-11 1.7e-08 34.5 1.7 1 25 338 362 338 363 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZSCAN22-201 - 491 2.3e-62 204.8 49.6 5 9 1.4e-12 1.2e-09 38.1 0.3 1 25 366 390 366 391 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZSCAN22-201 - 491 2.3e-62 204.8 49.6 6 9 1.4e-11 1.2e-08 34.9 0.4 1 25 394 418 394 419 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZSCAN22-201 - 491 2.3e-62 204.8 49.6 7 9 2.6e-12 2.3e-09 37.2 0.1 1 25 422 446 422 447 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZSCAN22-201 - 491 2.3e-62 204.8 49.6 8 9 1.4e-11 1.3e-08 34.9 0.2 2 25 451 474 450 475 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZSCAN22-201 - 491 2.3e-62 204.8 49.6 9 9 2.5 2.3e+03 -0.7 0.2 1 9 478 486 478 487 0.88 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZSCAN22-201 - 491 8.8e-50 164.5 53.6 1 8 2e-06 0.0018 18.6 0.8 2 23 269 290 268 290 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZSCAN22-201 - 491 8.8e-50 164.5 53.6 2 8 1.2e-07 0.00011 22.5 0.5 1 23 296 318 296 318 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZSCAN22-201 - 491 8.8e-50 164.5 53.6 3 8 9.8e-08 8.8e-05 22.7 3.1 1 23 324 346 324 346 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZSCAN22-201 - 491 8.8e-50 164.5 53.6 4 8 1.2e-09 1.1e-06 28.7 2.9 1 23 352 374 352 374 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZSCAN22-201 - 491 8.8e-50 164.5 53.6 5 8 2.9e-08 2.6e-05 24.4 0.9 1 23 380 402 380 402 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZSCAN22-201 - 491 8.8e-50 164.5 53.6 6 8 3.2e-08 2.8e-05 24.3 0.5 1 23 408 430 408 430 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZSCAN22-201 - 491 8.8e-50 164.5 53.6 7 8 1.5e-08 1.4e-05 25.3 0.2 1 23 436 458 436 458 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZSCAN22-201 - 491 8.8e-50 164.5 53.6 8 8 2.1e-10 1.9e-07 31.1 0.3 1 23 464 486 464 486 0.99 Zinc finger, C2H2 type SCAN PF02023.17 90 ZSCAN22-201 - 491 7.7e-39 131.4 0.7 1 1 1.9e-41 1.7e-38 130.3 0.7 1 87 45 131 45 134 0.97 SCAN domain zf-C2H2_4 PF13894.6 24 ZSCAN22-201 - 491 1.1e-29 100.5 53.2 1 8 2.3e-05 0.021 15.6 1.0 2 23 269 290 268 291 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZSCAN22-201 - 491 1.1e-29 100.5 53.2 2 8 3.9e-05 0.035 14.9 0.8 1 23 296 318 296 319 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZSCAN22-201 - 491 1.1e-29 100.5 53.2 3 8 5.2e-05 0.047 14.5 2.5 1 23 324 346 324 347 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZSCAN22-201 - 491 1.1e-29 100.5 53.2 4 8 4.8e-06 0.0043 17.8 2.1 1 23 352 374 352 375 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZSCAN22-201 - 491 1.1e-29 100.5 53.2 5 8 2.9e-05 0.026 15.3 0.8 1 23 380 402 380 403 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZSCAN22-201 - 491 1.1e-29 100.5 53.2 6 8 3.4e-07 0.0003 21.4 0.6 1 23 408 430 408 431 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZSCAN22-201 - 491 1.1e-29 100.5 53.2 7 8 3e-05 0.027 15.3 0.3 1 23 436 458 436 459 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZSCAN22-201 - 491 1.1e-29 100.5 53.2 8 8 1.4e-06 0.0013 19.4 0.2 1 23 464 486 464 487 0.96 C2H2-type zinc finger zf-C2H2_jaz PF12171.8 27 ZSCAN22-201 - 491 2.1e-18 66.1 24.7 1 8 9.3e-07 0.00084 19.6 1.3 3 24 269 290 267 291 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZSCAN22-201 - 491 2.1e-18 66.1 24.7 2 8 0.017 15 6.0 0.1 2 21 296 315 295 316 0.91 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZSCAN22-201 - 491 2.1e-18 66.1 24.7 3 8 0.001 0.9 9.9 0.2 2 22 324 344 323 344 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZSCAN22-201 - 491 2.1e-18 66.1 24.7 4 8 0.00053 0.47 10.8 0.1 2 22 352 372 351 372 0.93 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZSCAN22-201 - 491 2.1e-18 66.1 24.7 5 8 0.0032 2.8 8.3 0.1 2 22 380 400 379 400 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZSCAN22-201 - 491 2.1e-18 66.1 24.7 6 8 0.0066 5.9 7.3 0.0 2 22 408 428 407 428 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZSCAN22-201 - 491 2.1e-18 66.1 24.7 7 8 0.0084 7.6 7.0 0.1 4 22 438 456 435 456 0.90 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZSCAN22-201 - 491 2.1e-18 66.1 24.7 8 8 0.0018 1.6 9.1 0.0 2 22 464 484 463 484 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_6 PF13912.6 27 ZSCAN22-201 - 491 3.3e-13 49.3 57.6 1 8 5.1e-05 0.046 13.7 2.6 3 26 269 292 269 293 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZSCAN22-201 - 491 3.3e-13 49.3 57.6 2 8 0.0044 3.9 7.6 1.9 2 13 296 307 296 315 0.84 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZSCAN22-201 - 491 3.3e-13 49.3 57.6 3 8 5.1e-05 0.046 13.7 2.3 2 22 324 344 324 348 0.89 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZSCAN22-201 - 491 3.3e-13 49.3 57.6 4 8 0.0015 1.3 9.1 2.5 2 24 352 374 352 377 0.88 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZSCAN22-201 - 491 3.3e-13 49.3 57.6 5 8 0.0033 2.9 8.0 1.0 2 20 380 398 380 403 0.79 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZSCAN22-201 - 491 3.3e-13 49.3 57.6 6 8 0.00071 0.64 10.1 0.3 2 24 408 430 408 433 0.92 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZSCAN22-201 - 491 3.3e-13 49.3 57.6 7 8 0.003 2.7 8.1 0.2 2 24 436 458 436 461 0.89 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZSCAN22-201 - 491 3.3e-13 49.3 57.6 8 8 0.00014 0.12 12.4 0.3 2 24 464 486 464 486 0.93 C2H2-type zinc finger Zn-ribbon_8 PF09723.10 40 ZSCAN22-201 - 491 2.2e-07 30.9 37.3 1 8 0.0042 3.7 7.7 4.6 4 38 260 307 258 308 0.78 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZSCAN22-201 - 491 2.2e-07 30.9 37.3 2 8 8.2e-06 0.0073 16.4 2.2 6 39 296 336 295 337 0.86 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZSCAN22-201 - 491 2.2e-07 30.9 37.3 3 8 0.00028 0.25 11.5 4.4 7 38 325 363 320 364 0.91 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZSCAN22-201 - 491 2.2e-07 30.9 37.3 4 8 0.00012 0.11 12.6 4.4 6 35 352 388 350 392 0.90 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZSCAN22-201 - 491 2.2e-07 30.9 37.3 5 8 3.9e-05 0.035 14.2 2.8 6 34 380 415 379 418 0.92 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZSCAN22-201 - 491 2.2e-07 30.9 37.3 6 8 0.001 0.93 9.7 2.4 6 33 408 442 407 448 0.79 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZSCAN22-201 - 491 2.2e-07 30.9 37.3 7 8 0.0015 1.4 9.1 2.7 6 38 436 475 435 476 0.87 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZSCAN22-201 - 491 2.2e-07 30.9 37.3 8 8 0.004 3.6 7.8 0.2 6 17 464 475 463 481 0.86 Zinc ribbon domain zf-C2H2_11 PF16622.5 29 ZSCAN22-201 - 491 4.4e-07 29.5 41.5 1 8 0.017 16 5.4 0.9 4 23 267 286 265 288 0.89 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZSCAN22-201 - 491 4.4e-07 29.5 41.5 2 8 0.021 19 5.2 0.5 7 23 298 314 294 318 0.85 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZSCAN22-201 - 491 4.4e-07 29.5 41.5 3 8 0.016 14 5.5 0.6 5 26 324 345 323 346 0.90 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZSCAN22-201 - 491 4.4e-07 29.5 41.5 4 8 0.0065 5.9 6.8 0.6 5 25 352 372 349 374 0.89 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZSCAN22-201 - 491 4.4e-07 29.5 41.5 5 8 0.021 19 5.1 0.2 7 26 382 401 379 402 0.92 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZSCAN22-201 - 491 4.4e-07 29.5 41.5 6 8 4.5e-05 0.041 13.7 0.3 5 26 408 429 405 430 0.94 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZSCAN22-201 - 491 4.4e-07 29.5 41.5 7 8 0.036 32 4.4 0.1 5 26 436 457 433 458 0.89 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZSCAN22-201 - 491 4.4e-07 29.5 41.5 8 8 0.00077 0.69 9.7 0.2 5 26 464 485 461 486 0.94 zinc-finger C2H2-type XPA_N PF01286.18 32 ZSCAN22-201 - 491 7.8e-07 29.0 31.6 1 8 0.026 23 5.1 0.4 3 12 269 278 267 281 0.87 XPA protein N-terminal XPA_N PF01286.18 32 ZSCAN22-201 - 491 7.8e-07 29.0 31.6 2 8 0.0075 6.8 6.8 0.1 4 14 298 308 295 313 0.89 XPA protein N-terminal XPA_N PF01286.18 32 ZSCAN22-201 - 491 7.8e-07 29.0 31.6 3 8 0.0085 7.6 6.7 0.5 3 12 325 334 323 335 0.87 XPA protein N-terminal XPA_N PF01286.18 32 ZSCAN22-201 - 491 7.8e-07 29.0 31.6 4 8 0.0043 3.8 7.6 0.1 3 14 353 364 351 370 0.86 XPA protein N-terminal XPA_N PF01286.18 32 ZSCAN22-201 - 491 7.8e-07 29.0 31.6 5 8 0.0036 3.2 7.9 0.1 3 15 381 393 379 398 0.86 XPA protein N-terminal XPA_N PF01286.18 32 ZSCAN22-201 - 491 7.8e-07 29.0 31.6 6 8 0.029 26 5.0 0.2 3 13 409 419 407 426 0.89 XPA protein N-terminal XPA_N PF01286.18 32 ZSCAN22-201 - 491 7.8e-07 29.0 31.6 7 8 0.33 3e+02 1.6 0.2 3 14 437 448 435 450 0.83 XPA protein N-terminal XPA_N PF01286.18 32 ZSCAN22-201 - 491 7.8e-07 29.0 31.6 8 8 0.012 11 6.2 0.1 3 14 465 476 463 480 0.90 XPA protein N-terminal zf_UBZ PF18439.1 32 ZSCAN22-201 - 491 9.5e-07 28.3 35.0 1 8 0.026 24 4.7 0.3 4 21 269 287 267 287 0.86 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZSCAN22-201 - 491 9.5e-07 28.3 35.0 2 8 0.00067 0.6 9.8 0.2 3 21 296 315 294 315 0.87 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZSCAN22-201 - 491 9.5e-07 28.3 35.0 3 8 0.034 30 4.3 0.8 4 20 325 342 323 343 0.78 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZSCAN22-201 - 491 9.5e-07 28.3 35.0 4 8 0.0013 1.1 8.8 0.2 3 21 352 371 350 371 0.88 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZSCAN22-201 - 491 9.5e-07 28.3 35.0 5 8 0.0025 2.3 7.9 0.3 3 21 380 399 378 399 0.90 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZSCAN22-201 - 491 9.5e-07 28.3 35.0 6 8 0.087 78 3.0 0.3 3 13 408 418 406 426 0.87 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZSCAN22-201 - 491 9.5e-07 28.3 35.0 7 8 0.075 67 3.2 0.2 3 21 436 455 434 455 0.93 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZSCAN22-201 - 491 9.5e-07 28.3 35.0 8 8 0.0023 2.1 8.0 0.0 3 15 464 476 462 483 0.80 Ubiquitin-Binding Zinc Finger # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN22-201.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN22-201.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN22-201.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN22-201.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN22-201.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:15:48 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- SCAN PF02023.17 90 ZSCAN23-201 - 389 1.7e-43 146.3 5.0 1 1 8e-46 4.2e-43 145.1 5.0 2 89 45 132 44 133 0.98 SCAN domain zf-H2C2_2 PF13465.6 26 ZSCAN23-201 - 389 1.2e-39 133.0 22.9 1 6 0.001 0.54 10.8 0.1 11 25 245 259 239 260 0.89 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZSCAN23-201 - 389 1.2e-39 133.0 22.9 2 6 6e-11 3.2e-08 33.7 0.1 4 25 266 287 264 288 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZSCAN23-201 - 389 1.2e-39 133.0 22.9 3 6 5.3e-11 2.8e-08 33.8 0.2 2 25 292 315 291 316 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZSCAN23-201 - 389 1.2e-39 133.0 22.9 4 6 9.1e-11 4.8e-08 33.1 1.3 4 25 322 343 319 344 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZSCAN23-201 - 389 1.2e-39 133.0 22.9 5 6 9.5e-11 5e-08 33.0 0.3 2 24 348 370 348 372 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZSCAN23-201 - 389 1.2e-39 133.0 22.9 6 6 1.8 9.5e+02 0.5 0.0 1 11 375 385 375 386 0.86 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZSCAN23-201 - 389 1.3e-28 97.8 31.1 1 5 1.7e-07 8.9e-05 22.7 0.3 1 23 249 271 249 271 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZSCAN23-201 - 389 1.3e-28 97.8 31.1 2 5 2.5e-08 1.3e-05 25.4 0.3 1 23 277 299 277 299 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZSCAN23-201 - 389 1.3e-28 97.8 31.1 3 5 4.7e-08 2.5e-05 24.5 0.6 1 23 305 327 305 327 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZSCAN23-201 - 389 1.3e-28 97.8 31.1 4 5 1e-08 5.5e-06 26.5 1.8 1 23 333 355 333 355 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZSCAN23-201 - 389 1.3e-28 97.8 31.1 5 5 1e-05 0.0054 17.1 3.0 1 23 361 383 361 383 0.98 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZSCAN23-201 - 389 3.9e-19 67.7 29.4 1 5 1.4e-05 0.0076 17.0 0.3 1 23 249 271 249 272 0.86 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZSCAN23-201 - 389 3.9e-19 67.7 29.4 2 5 1.4e-05 0.0071 17.1 0.4 1 23 277 299 277 300 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZSCAN23-201 - 389 3.9e-19 67.7 29.4 3 5 2.1e-06 0.0011 19.6 0.7 1 23 305 327 305 328 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZSCAN23-201 - 389 3.9e-19 67.7 29.4 4 5 9.6e-06 0.0051 17.5 1.2 1 23 333 355 333 356 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZSCAN23-201 - 389 3.9e-19 67.7 29.4 5 5 0.00011 0.058 14.3 2.1 1 23 361 383 361 384 0.95 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZSCAN23-201 - 389 6.6e-12 45.1 28.4 1 5 4.7e-05 0.025 14.6 0.3 2 24 249 271 249 274 0.87 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZSCAN23-201 - 389 6.6e-12 45.1 28.4 2 5 0.001 0.54 10.3 0.4 2 13 277 288 277 300 0.78 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZSCAN23-201 - 389 6.6e-12 45.1 28.4 3 5 0.00035 0.19 11.8 0.8 1 24 304 327 304 330 0.82 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZSCAN23-201 - 389 6.6e-12 45.1 28.4 4 5 2.9e-05 0.015 15.2 0.6 2 24 333 355 333 358 0.90 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZSCAN23-201 - 389 6.6e-12 45.1 28.4 5 5 0.0014 0.74 9.9 2.0 2 24 361 383 361 384 0.95 C2H2-type zinc finger # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN23-201.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN23-201.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN23-201.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN23-201.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN23-201.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:15:48 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- SCAN PF02023.17 90 ZSCAN23-202 - 146 3.3e-44 148.6 5.0 1 1 5.3e-48 4.8e-44 148.1 5.0 2 89 45 132 44 133 0.98 SCAN domain # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN23-202.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN23-202.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN23-202.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN23-202.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN23-202.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:15:49 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN23-203.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN23-203.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN23-203.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN23-203.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN23-203.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:15:49 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZSCAN26-201 - 344 3.3e-41 137.9 67.2 1 9 0.15 1.2e+02 3.4 0.1 1 20 83 102 83 108 0.68 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZSCAN26-201 - 344 3.3e-41 137.9 67.2 2 9 0.019 15 6.2 6.0 4 24 114 157 111 159 0.65 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZSCAN26-201 - 344 3.3e-41 137.9 67.2 3 9 1.8e-11 1.4e-08 34.7 0.6 1 25 162 186 162 187 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZSCAN26-201 - 344 3.3e-41 137.9 67.2 4 9 7.4e-10 5.7e-07 29.7 0.5 2 25 191 214 190 215 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZSCAN26-201 - 344 3.3e-41 137.9 67.2 5 9 3e-08 2.4e-05 24.6 2.8 1 25 218 242 218 243 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZSCAN26-201 - 344 3.3e-41 137.9 67.2 6 9 0.00013 0.099 13.1 3.8 2 25 247 270 247 270 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZSCAN26-201 - 344 3.3e-41 137.9 67.2 7 9 1e-09 8e-07 29.2 1.1 1 24 274 297 274 298 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZSCAN26-201 - 344 3.3e-41 137.9 67.2 8 9 3.8e-09 2.9e-06 27.4 0.3 1 25 302 326 302 327 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZSCAN26-201 - 344 3.3e-41 137.9 67.2 9 9 0.16 1.3e+02 3.3 0.7 2 13 331 342 330 343 0.84 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZSCAN26-201 - 344 7.4e-36 120.6 73.1 1 10 1.3 9.9e+02 0.5 0.0 14 21 82 89 82 90 0.86 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZSCAN26-201 - 344 7.4e-36 120.6 73.1 2 10 1.1 8.7e+02 0.7 0.3 8 23 104 119 97 119 0.78 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZSCAN26-201 - 344 7.4e-36 120.6 73.1 3 10 7.9 6.1e+03 -1.9 0.0 11 21 130 140 124 141 0.74 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZSCAN26-201 - 344 7.4e-36 120.6 73.1 4 10 2.2e-08 1.7e-05 25.0 5.5 1 23 148 170 148 170 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZSCAN26-201 - 344 7.4e-36 120.6 73.1 5 10 2.1e-08 1.6e-05 25.1 0.1 1 23 176 198 176 198 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZSCAN26-201 - 344 7.4e-36 120.6 73.1 6 10 6.6e-07 0.00051 20.3 5.2 3 23 206 226 204 226 0.92 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZSCAN26-201 - 344 7.4e-36 120.6 73.1 7 10 4.3e-07 0.00033 20.9 3.1 2 23 233 254 232 254 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZSCAN26-201 - 344 7.4e-36 120.6 73.1 8 10 2e-07 0.00016 22.0 2.3 1 23 260 282 260 282 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZSCAN26-201 - 344 7.4e-36 120.6 73.1 9 10 1.9e-07 0.00014 22.1 1.4 1 23 288 310 288 310 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZSCAN26-201 - 344 7.4e-36 120.6 73.1 10 10 8.6e-08 6.7e-05 23.1 2.1 1 23 316 338 316 339 0.96 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZSCAN26-201 - 344 2.2e-20 71.6 67.6 1 9 7 5.5e+03 -1.2 0.2 8 23 104 119 97 120 0.66 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZSCAN26-201 - 344 2.2e-20 71.6 67.6 2 9 8 6.2e+03 -1.4 0.1 5 21 124 140 123 142 0.71 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZSCAN26-201 - 344 2.2e-20 71.6 67.6 3 9 0.00012 0.09 13.7 4.6 1 23 148 170 148 171 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZSCAN26-201 - 344 2.2e-20 71.6 67.6 4 9 2.2e-06 0.0017 19.0 0.1 1 23 176 198 176 199 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZSCAN26-201 - 344 2.2e-20 71.6 67.6 5 9 9.3e-06 0.0072 17.1 3.6 1 23 204 226 204 227 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZSCAN26-201 - 344 2.2e-20 71.6 67.6 6 9 0.00016 0.12 13.2 3.1 2 23 233 254 232 255 0.78 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZSCAN26-201 - 344 2.2e-20 71.6 67.6 7 9 0.00011 0.086 13.7 1.5 1 23 260 282 260 283 0.88 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZSCAN26-201 - 344 2.2e-20 71.6 67.6 8 9 2.6e-05 0.02 15.7 1.1 1 23 288 310 288 311 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZSCAN26-201 - 344 2.2e-20 71.6 67.6 9 9 3.2e-06 0.0025 18.5 2.0 1 24 316 339 316 339 0.98 C2H2-type zinc finger Zn-ribbon_8 PF09723.10 40 ZSCAN26-201 - 344 5.5e-09 36.0 29.2 1 6 8.6 6.7e+03 -2.7 0.0 10 23 61 73 60 80 0.65 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZSCAN26-201 - 344 5.5e-09 36.0 29.2 2 6 1.2 9.4e+02 0.1 0.2 5 15 96 106 95 134 0.77 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZSCAN26-201 - 344 5.5e-09 36.0 29.2 3 6 0.024 19 5.5 0.1 7 17 149 159 140 173 0.77 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZSCAN26-201 - 344 5.5e-09 36.0 29.2 4 6 9.1e-07 0.00071 19.6 0.1 6 38 176 215 175 217 0.89 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZSCAN26-201 - 344 5.5e-09 36.0 29.2 5 6 0.00023 0.18 12.0 5.4 7 33 233 266 204 275 0.60 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZSCAN26-201 - 344 5.5e-09 36.0 29.2 6 6 0.00018 0.14 12.3 1.9 6 38 288 327 287 329 0.84 Zinc ribbon domain XPA_N PF01286.18 32 ZSCAN26-201 - 344 2.6e-08 33.7 22.2 1 7 0.0031 2.4 8.3 0.1 3 14 149 160 148 164 0.90 XPA protein N-terminal XPA_N PF01286.18 32 ZSCAN26-201 - 344 2.6e-08 33.7 22.2 2 7 0.06 46 4.2 0.1 3 12 177 186 175 188 0.86 XPA protein N-terminal XPA_N PF01286.18 32 ZSCAN26-201 - 344 2.6e-08 33.7 22.2 3 7 0.019 15 5.7 0.0 4 14 206 216 203 221 0.86 XPA protein N-terminal XPA_N PF01286.18 32 ZSCAN26-201 - 344 2.6e-08 33.7 22.2 4 7 9.6e-05 0.075 13.1 0.6 3 19 233 249 231 251 0.92 XPA protein N-terminal XPA_N PF01286.18 32 ZSCAN26-201 - 344 2.6e-08 33.7 22.2 5 7 0.012 9.3 6.4 0.1 3 12 261 270 259 278 0.86 XPA protein N-terminal XPA_N PF01286.18 32 ZSCAN26-201 - 344 2.6e-08 33.7 22.2 6 7 0.31 2.4e+02 1.9 0.1 3 11 289 297 287 306 0.76 XPA protein N-terminal XPA_N PF01286.18 32 ZSCAN26-201 - 344 2.6e-08 33.7 22.2 7 7 0.044 34 4.6 0.1 3 12 317 326 315 337 0.80 XPA protein N-terminal zf-C2H2_11 PF16622.5 29 ZSCAN26-201 - 344 8.7e-08 31.8 47.5 1 7 0.0028 2.1 8.1 2.6 5 26 148 169 145 170 0.89 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZSCAN26-201 - 344 8.7e-08 31.8 47.5 2 7 0.00028 0.22 11.3 0.0 5 26 176 197 173 198 0.94 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZSCAN26-201 - 344 8.7e-08 31.8 47.5 3 7 0.001 0.79 9.5 3.1 7 26 206 225 203 226 0.95 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZSCAN26-201 - 344 8.7e-08 31.8 47.5 4 7 0.0012 0.91 9.3 1.8 5 26 232 253 229 256 0.93 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZSCAN26-201 - 344 8.7e-08 31.8 47.5 5 7 1.4e-05 0.011 15.4 1.6 3 26 258 281 256 282 0.93 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZSCAN26-201 - 344 8.7e-08 31.8 47.5 6 7 4.9 3.8e+03 -2.2 0.7 6 26 289 309 287 310 0.72 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZSCAN26-201 - 344 8.7e-08 31.8 47.5 7 7 0.011 8.8 6.2 0.5 5 29 316 340 312 340 0.78 zinc-finger C2H2-type # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN26-201.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN26-201.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN26-201.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN26-201.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN26-201.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:15:50 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- SCAN PF02023.17 90 ZSCAN26-202 - 479 3.7e-38 129.2 7.2 1 2 1.8e-40 1.6e-37 127.2 6.0 2 88 48 134 47 136 0.96 SCAN domain SCAN PF02023.17 90 ZSCAN26-202 - 479 3.7e-38 129.2 7.2 2 2 1.3 1.1e+03 -0.5 0.0 56 87 383 414 379 416 0.85 SCAN domain zf-H2C2_2 PF13465.6 26 ZSCAN26-202 - 479 5.7e-38 127.7 72.7 1 9 0.2 1.8e+02 2.8 0.1 1 20 218 237 218 243 0.68 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZSCAN26-202 - 479 5.7e-38 127.7 72.7 2 9 0.024 21 5.7 5.9 4 24 249 292 246 294 0.65 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZSCAN26-202 - 479 5.7e-38 127.7 72.7 3 9 2.4e-11 2.2e-08 34.2 0.6 1 25 297 321 297 322 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZSCAN26-202 - 479 5.7e-38 127.7 72.7 4 9 9.6e-10 8.6e-07 29.1 0.5 2 25 326 349 325 350 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZSCAN26-202 - 479 5.7e-38 127.7 72.7 5 9 4e-08 3.6e-05 24.0 2.8 1 25 353 377 353 378 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZSCAN26-202 - 479 5.7e-38 127.7 72.7 6 9 0.00017 0.15 12.6 3.8 2 25 382 405 382 405 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZSCAN26-202 - 479 5.7e-38 127.7 72.7 7 9 1.3e-09 1.2e-06 28.6 1.1 1 24 409 432 409 433 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZSCAN26-202 - 479 5.7e-38 127.7 72.7 8 9 5e-09 4.4e-06 26.9 0.3 1 25 437 461 437 462 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZSCAN26-202 - 479 5.7e-38 127.7 72.7 9 9 0.21 1.9e+02 2.8 0.7 2 13 466 477 465 478 0.84 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZSCAN26-202 - 479 2.5e-34 115.8 73.1 1 9 1.6 1.4e+03 0.0 0.0 14 21 217 224 217 225 0.86 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZSCAN26-202 - 479 2.5e-34 115.8 73.1 2 9 1.4 1.3e+03 0.2 0.3 8 23 239 254 232 254 0.78 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZSCAN26-202 - 479 2.5e-34 115.8 73.1 3 9 2.8e-08 2.5e-05 24.5 5.5 1 23 283 305 283 305 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZSCAN26-202 - 479 2.5e-34 115.8 73.1 4 9 2.7e-08 2.4e-05 24.5 0.1 1 23 311 333 311 333 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZSCAN26-202 - 479 2.5e-34 115.8 73.1 5 9 8.6e-07 0.00077 19.8 5.2 3 23 341 361 339 361 0.92 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZSCAN26-202 - 479 2.5e-34 115.8 73.1 6 9 5.6e-07 0.0005 20.4 3.1 2 23 368 389 367 389 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZSCAN26-202 - 479 2.5e-34 115.8 73.1 7 9 2.6e-07 0.00024 21.4 2.3 1 23 395 417 395 417 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZSCAN26-202 - 479 2.5e-34 115.8 73.1 8 9 2.4e-07 0.00022 21.5 1.4 1 23 423 445 423 445 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZSCAN26-202 - 479 2.5e-34 115.8 73.1 9 9 1.1e-07 0.0001 22.6 2.1 1 23 451 473 451 474 0.96 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZSCAN26-202 - 479 4.6e-19 67.5 67.7 1 8 9.1 8.2e+03 -1.8 0.2 8 23 239 254 232 255 0.65 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZSCAN26-202 - 479 4.6e-19 67.5 67.7 2 8 0.00015 0.14 13.1 4.6 1 23 283 305 283 306 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZSCAN26-202 - 479 4.6e-19 67.5 67.7 3 8 2.8e-06 0.0025 18.5 0.1 1 23 311 333 311 334 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZSCAN26-202 - 479 4.6e-19 67.5 67.7 4 8 1.2e-05 0.011 16.5 3.6 1 23 339 361 339 362 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZSCAN26-202 - 479 4.6e-19 67.5 67.7 5 8 0.00021 0.19 12.7 3.1 2 23 368 389 367 390 0.78 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZSCAN26-202 - 479 4.6e-19 67.5 67.7 6 8 0.00015 0.13 13.2 1.5 1 23 395 417 395 418 0.88 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZSCAN26-202 - 479 4.6e-19 67.5 67.7 7 8 3.4e-05 0.031 15.1 1.1 1 23 423 445 423 446 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZSCAN26-202 - 479 4.6e-19 67.5 67.7 8 8 4.3e-06 0.0038 17.9 2.0 1 24 451 474 451 474 0.98 C2H2-type zinc finger Zn-ribbon_8 PF09723.10 40 ZSCAN26-202 - 479 3.1e-07 30.4 31.7 1 5 1.9 1.7e+03 -0.8 0.3 5 15 231 241 231 268 0.77 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZSCAN26-202 - 479 3.1e-07 30.4 31.7 2 5 0.032 29 4.9 0.1 7 17 284 294 276 308 0.77 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZSCAN26-202 - 479 3.1e-07 30.4 31.7 3 5 1.6e-06 0.0015 18.6 0.5 6 38 311 350 310 352 0.89 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZSCAN26-202 - 479 3.1e-07 30.4 31.7 4 5 0.00011 0.096 12.8 3.0 7 34 368 402 367 407 0.86 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZSCAN26-202 - 479 3.1e-07 30.4 31.7 5 5 0.00025 0.22 11.7 1.9 6 38 423 462 422 464 0.84 Zinc ribbon domain XPA_N PF01286.18 32 ZSCAN26-202 - 479 3.3e-07 30.2 22.2 1 7 0.004 3.5 7.7 0.1 3 14 284 295 283 299 0.90 XPA protein N-terminal XPA_N PF01286.18 32 ZSCAN26-202 - 479 3.3e-07 30.2 22.2 2 7 0.075 67 3.6 0.1 3 12 312 321 310 323 0.86 XPA protein N-terminal XPA_N PF01286.18 32 ZSCAN26-202 - 479 3.3e-07 30.2 22.2 3 7 0.025 22 5.2 0.0 4 14 341 351 338 356 0.86 XPA protein N-terminal XPA_N PF01286.18 32 ZSCAN26-202 - 479 3.3e-07 30.2 22.2 4 7 0.00012 0.11 12.6 0.6 3 19 368 384 366 386 0.92 XPA protein N-terminal XPA_N PF01286.18 32 ZSCAN26-202 - 479 3.3e-07 30.2 22.2 5 7 0.015 14 5.9 0.1 3 12 396 405 394 413 0.86 XPA protein N-terminal XPA_N PF01286.18 32 ZSCAN26-202 - 479 3.3e-07 30.2 22.2 6 7 0.4 3.6e+02 1.3 0.1 3 11 424 432 422 441 0.76 XPA protein N-terminal XPA_N PF01286.18 32 ZSCAN26-202 - 479 3.3e-07 30.2 22.2 7 7 0.056 50 4.1 0.1 3 12 452 461 450 472 0.80 XPA protein N-terminal # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN26-202.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN26-202.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN26-202.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN26-202.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN26-202.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:15:50 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZSCAN26-203 - 270 1.3e-41 139.2 69.7 1 9 0.17 1.1e+02 3.5 0.4 1 20 9 28 9 34 0.68 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZSCAN26-203 - 270 1.3e-41 139.2 69.7 2 9 0.019 12 6.5 6.2 4 24 40 83 37 85 0.66 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZSCAN26-203 - 270 1.3e-41 139.2 69.7 3 9 1.6e-11 1e-08 35.2 0.6 1 25 88 112 88 113 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZSCAN26-203 - 270 1.3e-41 139.2 69.7 4 9 6.5e-10 4.2e-07 30.1 0.5 2 25 117 140 116 141 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZSCAN26-203 - 270 1.3e-41 139.2 69.7 5 9 2.7e-08 1.7e-05 25.0 2.8 1 25 144 168 144 169 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZSCAN26-203 - 270 1.3e-41 139.2 69.7 6 9 0.00011 0.073 13.5 3.8 2 25 173 196 173 196 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZSCAN26-203 - 270 1.3e-41 139.2 69.7 7 9 9.1e-10 5.9e-07 29.6 1.1 1 24 200 223 200 224 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZSCAN26-203 - 270 1.3e-41 139.2 69.7 8 9 3.3e-09 2.1e-06 27.9 0.3 1 25 228 252 228 253 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZSCAN26-203 - 270 1.3e-41 139.2 69.7 9 9 0.15 96 3.7 0.7 2 13 257 268 256 269 0.84 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZSCAN26-203 - 270 5.3e-37 124.2 73.1 1 10 1.2 7.5e+02 0.9 0.0 14 21 8 15 8 16 0.86 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZSCAN26-203 - 270 5.3e-37 124.2 73.1 2 10 1 6.4e+02 1.1 0.3 8 23 30 45 23 45 0.78 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZSCAN26-203 - 270 5.3e-37 124.2 73.1 3 10 7.2 4.6e+03 -1.6 0.0 11 21 56 66 50 67 0.74 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZSCAN26-203 - 270 5.3e-37 124.2 73.1 4 10 1.9e-08 1.2e-05 25.4 5.5 1 23 74 96 74 96 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZSCAN26-203 - 270 5.3e-37 124.2 73.1 5 10 1.8e-08 1.2e-05 25.5 0.1 1 23 102 124 102 124 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZSCAN26-203 - 270 5.3e-37 124.2 73.1 6 10 5.9e-07 0.00038 20.8 5.2 3 23 132 152 130 152 0.92 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZSCAN26-203 - 270 5.3e-37 124.2 73.1 7 10 3.8e-07 0.00024 21.4 3.1 2 23 159 180 158 180 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZSCAN26-203 - 270 5.3e-37 124.2 73.1 8 10 1.8e-07 0.00011 22.4 2.3 1 23 186 208 186 208 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZSCAN26-203 - 270 5.3e-37 124.2 73.1 9 10 1.7e-07 0.00011 22.5 1.4 1 23 214 236 214 236 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZSCAN26-203 - 270 5.3e-37 124.2 73.1 10 10 7.6e-08 4.9e-05 23.6 2.1 1 23 242 264 242 265 0.96 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZSCAN26-203 - 270 2.1e-21 74.8 67.6 1 9 6.3 4e+03 -0.8 0.2 8 23 30 45 23 46 0.66 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZSCAN26-203 - 270 2.1e-21 74.8 67.6 2 9 7.2 4.6e+03 -1.0 0.1 5 21 50 66 49 68 0.71 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZSCAN26-203 - 270 2.1e-21 74.8 67.6 3 9 0.0001 0.066 14.1 4.6 1 23 74 96 74 97 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZSCAN26-203 - 270 2.1e-21 74.8 67.6 4 9 1.9e-06 0.0012 19.5 0.1 1 23 102 124 102 125 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZSCAN26-203 - 270 2.1e-21 74.8 67.6 5 9 8.2e-06 0.0053 17.5 3.6 1 23 130 152 130 153 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZSCAN26-203 - 270 2.1e-21 74.8 67.6 6 9 0.00014 0.09 13.7 3.1 2 23 159 180 158 181 0.78 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZSCAN26-203 - 270 2.1e-21 74.8 67.6 7 9 9.8e-05 0.063 14.1 1.5 1 23 186 208 186 209 0.88 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZSCAN26-203 - 270 2.1e-21 74.8 67.6 8 9 2.3e-05 0.015 16.1 1.1 1 23 214 236 214 237 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZSCAN26-203 - 270 2.1e-21 74.8 67.6 9 9 2.9e-06 0.0018 18.9 2.0 1 24 242 265 242 265 0.98 C2H2-type zinc finger Zn-ribbon_8 PF09723.10 40 ZSCAN26-203 - 270 1.6e-09 37.7 29.1 1 6 1 6.6e+02 0.5 0.1 5 15 22 32 21 61 0.76 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZSCAN26-203 - 270 1.6e-09 37.7 29.1 2 6 0.022 14 5.9 0.1 7 17 75 85 66 99 0.77 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZSCAN26-203 - 270 1.6e-09 37.7 29.1 3 6 8.3e-07 0.00053 20.0 0.2 6 38 102 141 101 143 0.89 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZSCAN26-203 - 270 1.6e-09 37.7 29.1 4 6 5.2e-05 0.034 14.3 2.1 6 36 130 167 130 171 0.87 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZSCAN26-203 - 270 1.6e-09 37.7 29.1 5 6 0.00015 0.097 12.8 4.1 7 34 159 193 158 197 0.86 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZSCAN26-203 - 270 1.6e-09 37.7 29.1 6 6 0.0002 0.13 12.4 2.3 6 38 214 253 213 255 0.84 Zinc ribbon domain XPA_N PF01286.18 32 ZSCAN26-203 - 270 4e-09 36.4 22.2 1 7 0.0028 1.8 8.7 0.1 3 14 75 86 74 90 0.90 XPA protein N-terminal XPA_N PF01286.18 32 ZSCAN26-203 - 270 4e-09 36.4 22.2 2 7 0.055 35 4.5 0.1 3 12 103 112 101 114 0.86 XPA protein N-terminal XPA_N PF01286.18 32 ZSCAN26-203 - 270 4e-09 36.4 22.2 3 7 0.018 11 6.1 0.0 4 14 132 142 129 147 0.86 XPA protein N-terminal XPA_N PF01286.18 32 ZSCAN26-203 - 270 4e-09 36.4 22.2 4 7 8.7e-05 0.055 13.5 0.6 3 19 159 175 157 177 0.92 XPA protein N-terminal XPA_N PF01286.18 32 ZSCAN26-203 - 270 4e-09 36.4 22.2 5 7 0.011 7 6.8 0.1 3 12 187 196 185 204 0.86 XPA protein N-terminal XPA_N PF01286.18 32 ZSCAN26-203 - 270 4e-09 36.4 22.2 6 7 0.29 1.8e+02 2.3 0.1 3 11 215 223 213 232 0.76 XPA protein N-terminal XPA_N PF01286.18 32 ZSCAN26-203 - 270 4e-09 36.4 22.2 7 7 0.04 25 5.0 0.1 3 12 243 252 241 263 0.80 XPA protein N-terminal zf-C2H2_11 PF16622.5 29 ZSCAN26-203 - 270 1.3e-08 34.4 47.7 1 7 0.0025 1.6 8.6 2.6 5 26 74 95 71 96 0.89 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZSCAN26-203 - 270 1.3e-08 34.4 47.7 2 7 0.00025 0.16 11.8 0.0 5 26 102 123 99 124 0.94 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZSCAN26-203 - 270 1.3e-08 34.4 47.7 3 7 0.00091 0.58 10.0 3.1 7 26 132 151 129 152 0.95 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZSCAN26-203 - 270 1.3e-08 34.4 47.7 4 7 0.0011 0.72 9.7 1.9 5 26 158 179 155 182 0.93 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZSCAN26-203 - 270 1.3e-08 34.4 47.7 5 7 1.3e-05 0.0084 15.9 1.6 3 26 184 207 182 208 0.93 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZSCAN26-203 - 270 1.3e-08 34.4 47.7 6 7 4.4 2.8e+03 -1.8 0.7 6 26 215 235 213 236 0.72 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZSCAN26-203 - 270 1.3e-08 34.4 47.7 7 7 0.01 6.4 6.6 0.5 5 29 242 266 238 266 0.79 zinc-finger C2H2-type # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN26-203.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN26-203.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN26-203.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN26-203.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN26-203.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:15:50 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZSCAN26-204 - 344 3.3e-41 137.9 67.2 1 9 0.15 1.2e+02 3.4 0.1 1 20 83 102 83 108 0.68 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZSCAN26-204 - 344 3.3e-41 137.9 67.2 2 9 0.019 15 6.2 6.0 4 24 114 157 111 159 0.65 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZSCAN26-204 - 344 3.3e-41 137.9 67.2 3 9 1.8e-11 1.4e-08 34.7 0.6 1 25 162 186 162 187 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZSCAN26-204 - 344 3.3e-41 137.9 67.2 4 9 7.4e-10 5.7e-07 29.7 0.5 2 25 191 214 190 215 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZSCAN26-204 - 344 3.3e-41 137.9 67.2 5 9 3e-08 2.4e-05 24.6 2.8 1 25 218 242 218 243 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZSCAN26-204 - 344 3.3e-41 137.9 67.2 6 9 0.00013 0.099 13.1 3.8 2 25 247 270 247 270 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZSCAN26-204 - 344 3.3e-41 137.9 67.2 7 9 1e-09 8e-07 29.2 1.1 1 24 274 297 274 298 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZSCAN26-204 - 344 3.3e-41 137.9 67.2 8 9 3.8e-09 2.9e-06 27.4 0.3 1 25 302 326 302 327 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZSCAN26-204 - 344 3.3e-41 137.9 67.2 9 9 0.16 1.3e+02 3.3 0.7 2 13 331 342 330 343 0.84 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZSCAN26-204 - 344 7.4e-36 120.6 73.1 1 10 1.3 9.9e+02 0.5 0.0 14 21 82 89 82 90 0.86 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZSCAN26-204 - 344 7.4e-36 120.6 73.1 2 10 1.1 8.7e+02 0.7 0.3 8 23 104 119 97 119 0.78 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZSCAN26-204 - 344 7.4e-36 120.6 73.1 3 10 7.9 6.1e+03 -1.9 0.0 11 21 130 140 124 141 0.74 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZSCAN26-204 - 344 7.4e-36 120.6 73.1 4 10 2.2e-08 1.7e-05 25.0 5.5 1 23 148 170 148 170 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZSCAN26-204 - 344 7.4e-36 120.6 73.1 5 10 2.1e-08 1.6e-05 25.1 0.1 1 23 176 198 176 198 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZSCAN26-204 - 344 7.4e-36 120.6 73.1 6 10 6.6e-07 0.00051 20.3 5.2 3 23 206 226 204 226 0.92 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZSCAN26-204 - 344 7.4e-36 120.6 73.1 7 10 4.3e-07 0.00033 20.9 3.1 2 23 233 254 232 254 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZSCAN26-204 - 344 7.4e-36 120.6 73.1 8 10 2e-07 0.00016 22.0 2.3 1 23 260 282 260 282 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZSCAN26-204 - 344 7.4e-36 120.6 73.1 9 10 1.9e-07 0.00014 22.1 1.4 1 23 288 310 288 310 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZSCAN26-204 - 344 7.4e-36 120.6 73.1 10 10 8.6e-08 6.7e-05 23.1 2.1 1 23 316 338 316 339 0.96 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZSCAN26-204 - 344 2.2e-20 71.6 67.6 1 9 7 5.5e+03 -1.2 0.2 8 23 104 119 97 120 0.66 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZSCAN26-204 - 344 2.2e-20 71.6 67.6 2 9 8 6.2e+03 -1.4 0.1 5 21 124 140 123 142 0.71 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZSCAN26-204 - 344 2.2e-20 71.6 67.6 3 9 0.00012 0.09 13.7 4.6 1 23 148 170 148 171 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZSCAN26-204 - 344 2.2e-20 71.6 67.6 4 9 2.2e-06 0.0017 19.0 0.1 1 23 176 198 176 199 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZSCAN26-204 - 344 2.2e-20 71.6 67.6 5 9 9.3e-06 0.0072 17.1 3.6 1 23 204 226 204 227 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZSCAN26-204 - 344 2.2e-20 71.6 67.6 6 9 0.00016 0.12 13.2 3.1 2 23 233 254 232 255 0.78 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZSCAN26-204 - 344 2.2e-20 71.6 67.6 7 9 0.00011 0.086 13.7 1.5 1 23 260 282 260 283 0.88 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZSCAN26-204 - 344 2.2e-20 71.6 67.6 8 9 2.6e-05 0.02 15.7 1.1 1 23 288 310 288 311 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZSCAN26-204 - 344 2.2e-20 71.6 67.6 9 9 3.2e-06 0.0025 18.5 2.0 1 24 316 339 316 339 0.98 C2H2-type zinc finger Zn-ribbon_8 PF09723.10 40 ZSCAN26-204 - 344 5.5e-09 36.0 29.2 1 6 8.6 6.7e+03 -2.7 0.0 10 23 61 73 60 80 0.65 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZSCAN26-204 - 344 5.5e-09 36.0 29.2 2 6 1.2 9.4e+02 0.1 0.2 5 15 96 106 95 134 0.77 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZSCAN26-204 - 344 5.5e-09 36.0 29.2 3 6 0.024 19 5.5 0.1 7 17 149 159 140 173 0.77 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZSCAN26-204 - 344 5.5e-09 36.0 29.2 4 6 9.1e-07 0.00071 19.6 0.1 6 38 176 215 175 217 0.89 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZSCAN26-204 - 344 5.5e-09 36.0 29.2 5 6 0.00023 0.18 12.0 5.4 7 33 233 266 204 275 0.60 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZSCAN26-204 - 344 5.5e-09 36.0 29.2 6 6 0.00018 0.14 12.3 1.9 6 38 288 327 287 329 0.84 Zinc ribbon domain XPA_N PF01286.18 32 ZSCAN26-204 - 344 2.6e-08 33.7 22.2 1 7 0.0031 2.4 8.3 0.1 3 14 149 160 148 164 0.90 XPA protein N-terminal XPA_N PF01286.18 32 ZSCAN26-204 - 344 2.6e-08 33.7 22.2 2 7 0.06 46 4.2 0.1 3 12 177 186 175 188 0.86 XPA protein N-terminal XPA_N PF01286.18 32 ZSCAN26-204 - 344 2.6e-08 33.7 22.2 3 7 0.019 15 5.7 0.0 4 14 206 216 203 221 0.86 XPA protein N-terminal XPA_N PF01286.18 32 ZSCAN26-204 - 344 2.6e-08 33.7 22.2 4 7 9.6e-05 0.075 13.1 0.6 3 19 233 249 231 251 0.92 XPA protein N-terminal XPA_N PF01286.18 32 ZSCAN26-204 - 344 2.6e-08 33.7 22.2 5 7 0.012 9.3 6.4 0.1 3 12 261 270 259 278 0.86 XPA protein N-terminal XPA_N PF01286.18 32 ZSCAN26-204 - 344 2.6e-08 33.7 22.2 6 7 0.31 2.4e+02 1.9 0.1 3 11 289 297 287 306 0.76 XPA protein N-terminal XPA_N PF01286.18 32 ZSCAN26-204 - 344 2.6e-08 33.7 22.2 7 7 0.044 34 4.6 0.1 3 12 317 326 315 337 0.80 XPA protein N-terminal zf-C2H2_11 PF16622.5 29 ZSCAN26-204 - 344 8.7e-08 31.8 47.5 1 7 0.0028 2.1 8.1 2.6 5 26 148 169 145 170 0.89 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZSCAN26-204 - 344 8.7e-08 31.8 47.5 2 7 0.00028 0.22 11.3 0.0 5 26 176 197 173 198 0.94 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZSCAN26-204 - 344 8.7e-08 31.8 47.5 3 7 0.001 0.79 9.5 3.1 7 26 206 225 203 226 0.95 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZSCAN26-204 - 344 8.7e-08 31.8 47.5 4 7 0.0012 0.91 9.3 1.8 5 26 232 253 229 256 0.93 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZSCAN26-204 - 344 8.7e-08 31.8 47.5 5 7 1.4e-05 0.011 15.4 1.6 3 26 258 281 256 282 0.93 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZSCAN26-204 - 344 8.7e-08 31.8 47.5 6 7 4.9 3.8e+03 -2.2 0.7 6 26 289 309 287 310 0.72 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZSCAN26-204 - 344 8.7e-08 31.8 47.5 7 7 0.011 8.8 6.2 0.5 5 29 316 340 312 340 0.78 zinc-finger C2H2-type # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN26-204.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN26-204.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN26-204.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN26-204.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN26-204.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:15:51 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN26-205.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN26-205.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN26-205.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN26-205.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN26-205.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:15:51 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- SCAN PF02023.17 90 ZSCAN26-206 - 479 3.7e-38 129.2 7.2 1 2 1.8e-40 1.6e-37 127.2 6.0 2 88 48 134 47 136 0.96 SCAN domain SCAN PF02023.17 90 ZSCAN26-206 - 479 3.7e-38 129.2 7.2 2 2 1.3 1.1e+03 -0.5 0.0 56 87 383 414 379 416 0.85 SCAN domain zf-H2C2_2 PF13465.6 26 ZSCAN26-206 - 479 5.7e-38 127.7 72.7 1 9 0.2 1.8e+02 2.8 0.1 1 20 218 237 218 243 0.68 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZSCAN26-206 - 479 5.7e-38 127.7 72.7 2 9 0.024 21 5.7 5.9 4 24 249 292 246 294 0.65 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZSCAN26-206 - 479 5.7e-38 127.7 72.7 3 9 2.4e-11 2.2e-08 34.2 0.6 1 25 297 321 297 322 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZSCAN26-206 - 479 5.7e-38 127.7 72.7 4 9 9.6e-10 8.6e-07 29.1 0.5 2 25 326 349 325 350 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZSCAN26-206 - 479 5.7e-38 127.7 72.7 5 9 4e-08 3.6e-05 24.0 2.8 1 25 353 377 353 378 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZSCAN26-206 - 479 5.7e-38 127.7 72.7 6 9 0.00017 0.15 12.6 3.8 2 25 382 405 382 405 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZSCAN26-206 - 479 5.7e-38 127.7 72.7 7 9 1.3e-09 1.2e-06 28.6 1.1 1 24 409 432 409 433 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZSCAN26-206 - 479 5.7e-38 127.7 72.7 8 9 5e-09 4.4e-06 26.9 0.3 1 25 437 461 437 462 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZSCAN26-206 - 479 5.7e-38 127.7 72.7 9 9 0.21 1.9e+02 2.8 0.7 2 13 466 477 465 478 0.84 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZSCAN26-206 - 479 2.5e-34 115.8 73.1 1 9 1.6 1.4e+03 0.0 0.0 14 21 217 224 217 225 0.86 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZSCAN26-206 - 479 2.5e-34 115.8 73.1 2 9 1.4 1.3e+03 0.2 0.3 8 23 239 254 232 254 0.78 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZSCAN26-206 - 479 2.5e-34 115.8 73.1 3 9 2.8e-08 2.5e-05 24.5 5.5 1 23 283 305 283 305 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZSCAN26-206 - 479 2.5e-34 115.8 73.1 4 9 2.7e-08 2.4e-05 24.5 0.1 1 23 311 333 311 333 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZSCAN26-206 - 479 2.5e-34 115.8 73.1 5 9 8.6e-07 0.00077 19.8 5.2 3 23 341 361 339 361 0.92 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZSCAN26-206 - 479 2.5e-34 115.8 73.1 6 9 5.6e-07 0.0005 20.4 3.1 2 23 368 389 367 389 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZSCAN26-206 - 479 2.5e-34 115.8 73.1 7 9 2.6e-07 0.00024 21.4 2.3 1 23 395 417 395 417 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZSCAN26-206 - 479 2.5e-34 115.8 73.1 8 9 2.4e-07 0.00022 21.5 1.4 1 23 423 445 423 445 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZSCAN26-206 - 479 2.5e-34 115.8 73.1 9 9 1.1e-07 0.0001 22.6 2.1 1 23 451 473 451 474 0.96 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZSCAN26-206 - 479 4.6e-19 67.5 67.7 1 8 9.1 8.2e+03 -1.8 0.2 8 23 239 254 232 255 0.65 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZSCAN26-206 - 479 4.6e-19 67.5 67.7 2 8 0.00015 0.14 13.1 4.6 1 23 283 305 283 306 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZSCAN26-206 - 479 4.6e-19 67.5 67.7 3 8 2.8e-06 0.0025 18.5 0.1 1 23 311 333 311 334 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZSCAN26-206 - 479 4.6e-19 67.5 67.7 4 8 1.2e-05 0.011 16.5 3.6 1 23 339 361 339 362 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZSCAN26-206 - 479 4.6e-19 67.5 67.7 5 8 0.00021 0.19 12.7 3.1 2 23 368 389 367 390 0.78 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZSCAN26-206 - 479 4.6e-19 67.5 67.7 6 8 0.00015 0.13 13.2 1.5 1 23 395 417 395 418 0.88 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZSCAN26-206 - 479 4.6e-19 67.5 67.7 7 8 3.4e-05 0.031 15.1 1.1 1 23 423 445 423 446 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZSCAN26-206 - 479 4.6e-19 67.5 67.7 8 8 4.3e-06 0.0038 17.9 2.0 1 24 451 474 451 474 0.98 C2H2-type zinc finger Zn-ribbon_8 PF09723.10 40 ZSCAN26-206 - 479 3.1e-07 30.4 31.7 1 5 1.9 1.7e+03 -0.8 0.3 5 15 231 241 231 268 0.77 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZSCAN26-206 - 479 3.1e-07 30.4 31.7 2 5 0.032 29 4.9 0.1 7 17 284 294 276 308 0.77 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZSCAN26-206 - 479 3.1e-07 30.4 31.7 3 5 1.6e-06 0.0015 18.6 0.5 6 38 311 350 310 352 0.89 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZSCAN26-206 - 479 3.1e-07 30.4 31.7 4 5 0.00011 0.096 12.8 3.0 7 34 368 402 367 407 0.86 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZSCAN26-206 - 479 3.1e-07 30.4 31.7 5 5 0.00025 0.22 11.7 1.9 6 38 423 462 422 464 0.84 Zinc ribbon domain XPA_N PF01286.18 32 ZSCAN26-206 - 479 3.3e-07 30.2 22.2 1 7 0.004 3.5 7.7 0.1 3 14 284 295 283 299 0.90 XPA protein N-terminal XPA_N PF01286.18 32 ZSCAN26-206 - 479 3.3e-07 30.2 22.2 2 7 0.075 67 3.6 0.1 3 12 312 321 310 323 0.86 XPA protein N-terminal XPA_N PF01286.18 32 ZSCAN26-206 - 479 3.3e-07 30.2 22.2 3 7 0.025 22 5.2 0.0 4 14 341 351 338 356 0.86 XPA protein N-terminal XPA_N PF01286.18 32 ZSCAN26-206 - 479 3.3e-07 30.2 22.2 4 7 0.00012 0.11 12.6 0.6 3 19 368 384 366 386 0.92 XPA protein N-terminal XPA_N PF01286.18 32 ZSCAN26-206 - 479 3.3e-07 30.2 22.2 5 7 0.015 14 5.9 0.1 3 12 396 405 394 413 0.86 XPA protein N-terminal XPA_N PF01286.18 32 ZSCAN26-206 - 479 3.3e-07 30.2 22.2 6 7 0.4 3.6e+02 1.3 0.1 3 11 424 432 422 441 0.76 XPA protein N-terminal XPA_N PF01286.18 32 ZSCAN26-206 - 479 3.3e-07 30.2 22.2 7 7 0.056 50 4.1 0.1 3 12 452 461 450 472 0.80 XPA protein N-terminal # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN26-206.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN26-206.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN26-206.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN26-206.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN26-206.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:15:52 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- SCAN PF02023.17 90 ZSCAN26-207 - 478 3.7e-38 129.2 7.2 1 2 1.7e-40 1.6e-37 127.2 6.0 2 88 48 134 47 136 0.96 SCAN domain SCAN PF02023.17 90 ZSCAN26-207 - 478 3.7e-38 129.2 7.2 2 2 1.2 1.1e+03 -0.5 0.0 56 87 382 413 378 415 0.85 SCAN domain zf-H2C2_2 PF13465.6 26 ZSCAN26-207 - 478 5.5e-38 127.7 72.7 1 9 0.19 1.8e+02 2.8 0.1 1 20 217 236 217 242 0.68 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZSCAN26-207 - 478 5.5e-38 127.7 72.7 2 9 0.023 21 5.7 5.9 4 24 248 291 245 293 0.65 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZSCAN26-207 - 478 5.5e-38 127.7 72.7 3 9 2.3e-11 2.2e-08 34.2 0.6 1 25 296 320 296 321 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZSCAN26-207 - 478 5.5e-38 127.7 72.7 4 9 9.1e-10 8.6e-07 29.1 0.5 2 25 325 348 324 349 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZSCAN26-207 - 478 5.5e-38 127.7 72.7 5 9 3.8e-08 3.6e-05 24.0 2.8 1 25 352 376 352 377 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZSCAN26-207 - 478 5.5e-38 127.7 72.7 6 9 0.00016 0.15 12.6 3.8 2 25 381 404 381 404 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZSCAN26-207 - 478 5.5e-38 127.7 72.7 7 9 1.3e-09 1.2e-06 28.7 1.1 1 24 408 431 408 432 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZSCAN26-207 - 478 5.5e-38 127.7 72.7 8 9 4.7e-09 4.4e-06 26.9 0.3 1 25 436 460 436 461 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZSCAN26-207 - 478 5.5e-38 127.7 72.7 9 9 0.2 1.9e+02 2.8 0.7 2 13 465 476 464 477 0.84 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZSCAN26-207 - 478 2.4e-34 115.9 73.1 1 10 1.5 1.4e+03 0.0 0.0 14 21 216 223 216 224 0.86 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZSCAN26-207 - 478 2.4e-34 115.9 73.1 2 10 1.4 1.3e+03 0.2 0.3 8 23 238 253 231 253 0.78 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZSCAN26-207 - 478 2.4e-34 115.9 73.1 3 10 9.5 9e+03 -2.5 0.0 11 21 264 274 258 275 0.74 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZSCAN26-207 - 478 2.4e-34 115.9 73.1 4 10 2.7e-08 2.5e-05 24.5 5.5 1 23 282 304 282 304 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZSCAN26-207 - 478 2.4e-34 115.9 73.1 5 10 2.6e-08 2.4e-05 24.5 0.1 1 23 310 332 310 332 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZSCAN26-207 - 478 2.4e-34 115.9 73.1 6 10 8.1e-07 0.00077 19.8 5.2 3 23 340 360 338 360 0.92 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZSCAN26-207 - 478 2.4e-34 115.9 73.1 7 10 5.3e-07 0.0005 20.4 3.1 2 23 367 388 366 388 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZSCAN26-207 - 478 2.4e-34 115.9 73.1 8 10 2.5e-07 0.00024 21.4 2.3 1 23 394 416 394 416 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZSCAN26-207 - 478 2.4e-34 115.9 73.1 9 10 2.3e-07 0.00022 21.5 1.4 1 23 422 444 422 444 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZSCAN26-207 - 478 2.4e-34 115.9 73.1 10 10 1.1e-07 0.0001 22.6 2.1 1 23 450 472 450 473 0.96 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZSCAN26-207 - 478 4.5e-19 67.5 67.7 1 8 8.6 8.1e+03 -1.8 0.2 8 23 238 253 231 254 0.65 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZSCAN26-207 - 478 4.5e-19 67.5 67.7 2 8 0.00014 0.14 13.1 4.6 1 23 282 304 282 305 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZSCAN26-207 - 478 4.5e-19 67.5 67.7 3 8 2.7e-06 0.0025 18.5 0.1 1 23 310 332 310 333 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZSCAN26-207 - 478 4.5e-19 67.5 67.7 4 8 1.2e-05 0.011 16.5 3.6 1 23 338 360 338 361 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZSCAN26-207 - 478 4.5e-19 67.5 67.7 5 8 0.0002 0.19 12.7 3.1 2 23 367 388 366 389 0.78 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZSCAN26-207 - 478 4.5e-19 67.5 67.7 6 8 0.00014 0.13 13.2 1.5 1 23 394 416 394 417 0.88 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZSCAN26-207 - 478 4.5e-19 67.5 67.7 7 8 3.2e-05 0.031 15.1 1.1 1 23 422 444 422 445 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZSCAN26-207 - 478 4.5e-19 67.5 67.7 8 8 4e-06 0.0038 17.9 2.0 1 24 450 473 450 473 0.98 C2H2-type zinc finger Zn-ribbon_8 PF09723.10 40 ZSCAN26-207 - 478 3.1e-07 30.4 31.8 1 5 1.8 1.7e+03 -0.8 0.3 5 15 230 240 230 267 0.77 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZSCAN26-207 - 478 3.1e-07 30.4 31.8 2 5 0.03 28 4.9 0.1 7 17 283 293 275 307 0.77 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZSCAN26-207 - 478 3.1e-07 30.4 31.8 3 5 1.5e-06 0.0015 18.6 0.5 6 38 310 349 309 351 0.89 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZSCAN26-207 - 478 3.1e-07 30.4 31.8 4 5 0.0001 0.096 12.8 3.0 7 34 367 401 366 406 0.86 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZSCAN26-207 - 478 3.1e-07 30.4 31.8 5 5 0.00023 0.22 11.7 1.9 6 38 422 461 421 463 0.84 Zinc ribbon domain XPA_N PF01286.18 32 ZSCAN26-207 - 478 3.3e-07 30.2 22.2 1 7 0.0037 3.5 7.7 0.1 3 14 283 294 282 298 0.90 XPA protein N-terminal XPA_N PF01286.18 32 ZSCAN26-207 - 478 3.3e-07 30.2 22.2 2 7 0.071 67 3.6 0.1 3 12 311 320 309 322 0.86 XPA protein N-terminal XPA_N PF01286.18 32 ZSCAN26-207 - 478 3.3e-07 30.2 22.2 3 7 0.023 22 5.2 0.0 4 14 340 350 337 355 0.86 XPA protein N-terminal XPA_N PF01286.18 32 ZSCAN26-207 - 478 3.3e-07 30.2 22.2 4 7 0.00012 0.11 12.6 0.6 3 19 367 383 365 385 0.92 XPA protein N-terminal XPA_N PF01286.18 32 ZSCAN26-207 - 478 3.3e-07 30.2 22.2 5 7 0.014 14 5.9 0.1 3 12 395 404 393 412 0.86 XPA protein N-terminal XPA_N PF01286.18 32 ZSCAN26-207 - 478 3.3e-07 30.2 22.2 6 7 0.38 3.6e+02 1.3 0.1 3 11 423 431 421 440 0.76 XPA protein N-terminal XPA_N PF01286.18 32 ZSCAN26-207 - 478 3.3e-07 30.2 22.2 7 7 0.053 50 4.1 0.1 3 12 451 460 449 471 0.80 XPA protein N-terminal # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN26-207.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN26-207.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN26-207.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN26-207.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN26-207.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:15:52 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZSCAN29-201 - 363 2.4e-44 147.8 44.3 1 7 3 2.2e+03 -0.6 0.0 11 24 158 171 157 172 0.87 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZSCAN29-201 - 363 2.4e-44 147.8 44.3 2 7 3.1e-07 0.00022 21.5 0.1 2 25 176 199 175 200 0.89 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZSCAN29-201 - 363 2.4e-44 147.8 44.3 3 7 1.5e-10 1.1e-07 31.9 0.8 2 24 204 226 203 227 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZSCAN29-201 - 363 2.4e-44 147.8 44.3 4 7 1.1e-09 8.1e-07 29.2 1.6 4 25 234 255 231 256 0.90 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZSCAN29-201 - 363 2.4e-44 147.8 44.3 5 7 7.8e-12 5.6e-09 36.0 0.2 5 26 263 284 259 284 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZSCAN29-201 - 363 2.4e-44 147.8 44.3 6 7 2.9e-10 2e-07 31.1 2.6 1 25 287 311 287 312 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZSCAN29-201 - 363 2.4e-44 147.8 44.3 7 7 2.2e-07 0.00016 22.0 5.4 1 25 315 339 315 340 0.95 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZSCAN29-201 - 363 1.7e-38 128.9 53.0 1 7 7.6 5.5e+03 -1.8 0.1 8 23 169 183 168 183 0.67 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZSCAN29-201 - 363 1.7e-38 128.9 53.0 2 7 4.3e-09 3.1e-06 27.4 0.8 1 23 189 211 189 211 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZSCAN29-201 - 363 1.7e-38 128.9 53.0 3 7 3.1e-09 2.3e-06 27.8 1.5 1 23 217 239 217 239 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZSCAN29-201 - 363 1.7e-38 128.9 53.0 4 7 1e-09 7.4e-07 29.3 1.5 1 23 245 267 245 267 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZSCAN29-201 - 363 1.7e-38 128.9 53.0 5 7 6.4e-09 4.6e-06 26.8 2.3 1 23 273 295 273 295 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZSCAN29-201 - 363 1.7e-38 128.9 53.0 6 7 1.3e-09 9e-07 29.0 3.5 1 23 301 323 301 323 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZSCAN29-201 - 363 1.7e-38 128.9 53.0 7 7 4.8e-07 0.00034 20.9 2.6 3 23 331 351 329 351 0.93 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZSCAN29-201 - 363 1.4e-19 69.0 48.3 1 7 5.9 4.3e+03 -0.9 0.1 8 23 169 183 168 184 0.85 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZSCAN29-201 - 363 1.4e-19 69.0 48.3 2 7 4e-06 0.0029 18.3 0.5 1 23 189 211 189 212 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZSCAN29-201 - 363 1.4e-19 69.0 48.3 3 7 1.6e-05 0.012 16.4 0.7 1 23 217 239 217 240 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZSCAN29-201 - 363 1.4e-19 69.0 48.3 4 7 2e-05 0.014 16.2 1.3 1 23 245 267 245 268 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZSCAN29-201 - 363 1.4e-19 69.0 48.3 5 7 3e-06 0.0021 18.7 1.8 1 23 273 295 273 296 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZSCAN29-201 - 363 1.4e-19 69.0 48.3 6 7 1.9e-06 0.0014 19.3 2.7 1 23 301 323 301 324 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZSCAN29-201 - 363 1.4e-19 69.0 48.3 7 7 0.0021 1.5 9.9 2.3 2 19 330 347 329 351 0.91 C2H2-type zinc finger zf-C2H2_11 PF16622.5 29 ZSCAN29-201 - 363 2e-10 40.3 28.5 1 6 2e-05 0.014 15.1 0.3 4 26 188 210 186 211 0.92 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZSCAN29-201 - 363 2e-10 40.3 28.5 2 6 0.036 26 4.7 0.0 5 14 217 226 214 238 0.84 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZSCAN29-201 - 363 2e-10 40.3 28.5 3 6 0.00027 0.19 11.5 0.9 5 21 245 261 242 265 0.84 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZSCAN29-201 - 363 2e-10 40.3 28.5 4 6 0.0046 3.3 7.5 0.3 5 26 273 294 270 295 0.84 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZSCAN29-201 - 363 2e-10 40.3 28.5 5 6 0.15 1.1e+02 2.7 0.3 7 23 303 319 300 322 0.85 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZSCAN29-201 - 363 2e-10 40.3 28.5 6 6 1.7e-05 0.012 15.4 1.1 7 24 331 348 328 351 0.91 zinc-finger C2H2-type zf_UBZ PF18439.1 32 ZSCAN29-201 - 363 7.6e-08 31.8 24.2 1 6 0.0011 0.79 9.4 0.0 3 16 189 202 187 207 0.85 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZSCAN29-201 - 363 7.6e-08 31.8 24.2 2 6 0.012 8.6 6.1 0.1 3 16 217 231 215 236 0.78 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZSCAN29-201 - 363 7.6e-08 31.8 24.2 3 6 0.012 8.3 6.1 0.6 3 15 245 257 243 264 0.83 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZSCAN29-201 - 363 7.6e-08 31.8 24.2 4 6 0.0016 1.2 8.8 0.2 3 13 273 283 271 291 0.84 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZSCAN29-201 - 363 7.6e-08 31.8 24.2 5 6 0.00037 0.27 10.9 0.4 3 20 301 319 300 320 0.88 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZSCAN29-201 - 363 7.6e-08 31.8 24.2 6 6 0.033 24 4.6 0.6 3 17 329 344 327 347 0.79 Ubiquitin-Binding Zinc Finger Zn-ribbon_8 PF09723.10 40 ZSCAN29-201 - 363 4.1e-07 30.0 31.2 1 6 6 4.3e+03 -2.1 0.1 25 31 18 25 10 33 0.73 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZSCAN29-201 - 363 4.1e-07 30.0 31.2 2 6 6.1e-05 0.043 13.9 2.2 6 35 189 225 188 227 0.87 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZSCAN29-201 - 363 4.1e-07 30.0 31.2 3 6 0.0034 2.4 8.3 6.3 6 34 217 252 216 255 0.88 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZSCAN29-201 - 363 4.1e-07 30.0 31.2 4 6 0.048 34 4.6 2.0 6 18 245 257 242 268 0.82 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZSCAN29-201 - 363 4.1e-07 30.0 31.2 5 6 4.6e-07 0.00033 20.7 2.5 6 37 273 311 272 313 0.87 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZSCAN29-201 - 363 4.1e-07 30.0 31.2 6 6 0.034 24 5.1 0.4 6 18 329 341 328 351 0.81 Zinc ribbon domain zf-C2H2_jaz PF12171.8 27 ZSCAN29-201 - 363 1e-06 28.8 25.3 1 6 0.034 24 5.3 0.0 2 21 189 208 188 209 0.88 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZSCAN29-201 - 363 1e-06 28.8 25.3 2 6 0.00055 0.39 11.1 0.1 2 21 217 236 216 237 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZSCAN29-201 - 363 1e-06 28.8 25.3 3 6 1.3 9e+02 0.3 0.8 4 24 247 267 244 267 0.88 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZSCAN29-201 - 363 1e-06 28.8 25.3 4 6 0.0001 0.075 13.4 0.5 4 21 275 292 272 293 0.90 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZSCAN29-201 - 363 1e-06 28.8 25.3 5 6 0.0005 0.36 11.2 0.2 2 20 301 319 300 323 0.89 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZSCAN29-201 - 363 1e-06 28.8 25.3 6 6 1.1 7.9e+02 0.5 2.0 4 20 331 347 329 347 0.95 Zinc-finger double-stranded RNA-binding # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN29-201.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN29-201.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN29-201.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN29-201.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN29-201.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:15:52 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- SCAN PF02023.17 90 ZSCAN29-202 - 852 2.7e-43 145.7 3.1 1 1 1.4e-45 9.5e-43 143.9 3.1 1 88 14 101 14 103 0.98 SCAN domain zf-H2C2_2 PF13465.6 26 ZSCAN29-202 - 852 1e-41 139.5 44.3 1 7 8.2 5.7e+03 -1.9 0.0 11 24 647 660 646 661 0.86 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZSCAN29-202 - 852 1e-41 139.5 44.3 2 7 9e-07 0.00062 20.1 0.1 2 25 665 688 664 689 0.89 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZSCAN29-202 - 852 1e-41 139.5 44.3 3 7 4.4e-10 3e-07 30.5 0.8 2 24 693 715 692 716 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZSCAN29-202 - 852 1e-41 139.5 44.3 4 7 3.2e-09 2.2e-06 27.8 1.6 4 25 723 744 720 745 0.90 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZSCAN29-202 - 852 1e-41 139.5 44.3 5 7 2.3e-11 1.6e-08 34.6 0.2 5 26 752 773 748 773 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZSCAN29-202 - 852 1e-41 139.5 44.3 6 7 8.2e-10 5.7e-07 29.7 2.6 1 25 776 800 776 801 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZSCAN29-202 - 852 1e-41 139.5 44.3 7 7 6.4e-07 0.00044 20.6 5.4 1 25 804 828 804 829 0.95 Zinc-finger double domain Myb_DNA-bind_4 PF13837.6 90 ZSCAN29-202 - 852 8e-41 138.3 0.1 1 2 1.8e-21 1.2e-18 67.2 0.0 2 90 246 330 245 330 0.93 Myb/SANT-like DNA-binding domain Myb_DNA-bind_4 PF13837.6 90 ZSCAN29-202 - 852 8e-41 138.3 0.1 2 2 7.2e-22 5e-19 68.5 0.0 2 90 409 493 408 493 0.93 Myb/SANT-like DNA-binding domain zf-C2H2 PF00096.26 23 ZSCAN29-202 - 852 2.9e-37 125.1 48.9 1 6 1.2e-08 8.4e-06 26.0 0.8 1 23 678 700 678 700 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZSCAN29-202 - 852 2.9e-37 125.1 48.9 2 6 9e-09 6.2e-06 26.4 1.5 1 23 706 728 706 728 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZSCAN29-202 - 852 2.9e-37 125.1 48.9 3 6 3e-09 2e-06 27.9 1.5 1 23 734 756 734 756 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZSCAN29-202 - 852 2.9e-37 125.1 48.9 4 6 1.8e-08 1.3e-05 25.4 2.3 1 23 762 784 762 784 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZSCAN29-202 - 852 2.9e-37 125.1 48.9 5 6 3.6e-09 2.5e-06 27.6 3.5 1 23 790 812 790 812 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZSCAN29-202 - 852 2.9e-37 125.1 48.9 6 6 1.4e-06 0.00093 19.5 2.6 3 23 820 840 818 840 0.93 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZSCAN29-202 - 852 5.6e-16 57.9 52.7 1 6 1.2e-05 0.008 16.9 0.5 1 23 678 700 678 701 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZSCAN29-202 - 852 5.6e-16 57.9 52.7 2 6 4.7e-05 0.032 15.0 0.7 1 23 706 728 706 729 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZSCAN29-202 - 852 5.6e-16 57.9 52.7 3 6 5.7e-05 0.04 14.8 1.3 1 23 734 756 734 757 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZSCAN29-202 - 852 5.6e-16 57.9 52.7 4 6 8.7e-06 0.006 17.3 1.8 1 23 762 784 762 785 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZSCAN29-202 - 852 5.6e-16 57.9 52.7 5 6 5.6e-06 0.0038 17.9 2.7 1 23 790 812 790 813 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZSCAN29-202 - 852 5.6e-16 57.9 52.7 6 6 0.006 4.1 8.5 2.3 2 19 819 836 818 840 0.91 C2H2-type zinc finger zf-C2H2_11 PF16622.5 29 ZSCAN29-202 - 852 5.8e-08 32.4 28.5 1 6 5.6e-05 0.039 13.7 0.3 4 26 677 699 675 700 0.92 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZSCAN29-202 - 852 5.8e-08 32.4 28.5 2 6 0.098 68 3.4 0.0 5 14 706 715 703 727 0.84 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZSCAN29-202 - 852 5.8e-08 32.4 28.5 3 6 0.00074 0.51 10.1 0.9 5 21 734 750 731 754 0.84 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZSCAN29-202 - 852 5.8e-08 32.4 28.5 4 6 0.013 9 6.2 0.3 5 26 762 783 759 784 0.84 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZSCAN29-202 - 852 5.8e-08 32.4 28.5 5 6 0.41 2.8e+02 1.4 0.3 7 23 792 808 789 811 0.85 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZSCAN29-202 - 852 5.8e-08 32.4 28.5 6 6 4.7e-05 0.032 14.0 1.1 7 24 820 837 817 840 0.91 zinc-finger C2H2-type MADF_DNA_bdg PF10545.9 85 ZSCAN29-202 - 852 9.9e-07 29.0 0.3 1 2 0.00036 0.25 11.7 0.0 18 61 268 314 263 330 0.78 Alcohol dehydrogenase transcription factor Myb/SANT-like MADF_DNA_bdg PF10545.9 85 ZSCAN29-202 - 852 9.9e-07 29.0 0.3 2 2 4.9e-05 0.033 14.5 0.1 18 82 431 490 426 493 0.82 Alcohol dehydrogenase transcription factor Myb/SANT-like # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN29-202.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN29-202.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN29-202.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN29-202.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN29-202.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:15:53 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN29-203.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN29-203.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN29-203.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN29-203.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN29-203.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:15:53 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- SCAN PF02023.17 90 ZSCAN29-204 - 556 5.1e-43 144.8 3.1 1 2 2e-46 5.1e-43 144.8 3.1 1 88 13 100 13 102 0.98 SCAN domain SCAN PF02023.17 90 ZSCAN29-204 - 556 5.1e-43 144.8 3.1 2 2 3.6 9.3e+03 -3.5 0.1 1 13 457 469 457 473 0.81 SCAN domain Myb_DNA-bind_4 PF13837.6 90 ZSCAN29-204 - 556 2.9e-41 139.7 0.1 1 2 2.6e-22 6.8e-19 68.1 0.0 2 90 245 329 244 329 0.93 Myb/SANT-like DNA-binding domain Myb_DNA-bind_4 PF13837.6 90 ZSCAN29-204 - 556 2.9e-41 139.7 0.1 2 2 1.1e-22 2.7e-19 69.3 0.0 2 90 408 492 407 492 0.93 Myb/SANT-like DNA-binding domain MADF_DNA_bdg PF10545.9 85 ZSCAN29-204 - 556 4e-07 30.3 0.3 1 2 5.6e-05 0.14 12.4 0.0 18 61 267 313 262 329 0.77 Alcohol dehydrogenase transcription factor Myb/SANT-like MADF_DNA_bdg PF10545.9 85 ZSCAN29-204 - 556 4e-07 30.3 0.3 2 2 7.5e-06 0.019 15.3 0.1 18 82 430 489 425 492 0.82 Alcohol dehydrogenase transcription factor Myb/SANT-like # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN29-204.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN29-204.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN29-204.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN29-204.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN29-204.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:15:54 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN29-205.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN29-205.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN29-205.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN29-205.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN29-205.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:15:54 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZSCAN29-206 - 363 2.4e-44 147.8 44.3 1 7 3 2.2e+03 -0.6 0.0 11 24 158 171 157 172 0.87 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZSCAN29-206 - 363 2.4e-44 147.8 44.3 2 7 3.1e-07 0.00022 21.5 0.1 2 25 176 199 175 200 0.89 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZSCAN29-206 - 363 2.4e-44 147.8 44.3 3 7 1.5e-10 1.1e-07 31.9 0.8 2 24 204 226 203 227 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZSCAN29-206 - 363 2.4e-44 147.8 44.3 4 7 1.1e-09 8.1e-07 29.2 1.6 4 25 234 255 231 256 0.90 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZSCAN29-206 - 363 2.4e-44 147.8 44.3 5 7 7.8e-12 5.6e-09 36.0 0.2 5 26 263 284 259 284 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZSCAN29-206 - 363 2.4e-44 147.8 44.3 6 7 2.9e-10 2e-07 31.1 2.6 1 25 287 311 287 312 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZSCAN29-206 - 363 2.4e-44 147.8 44.3 7 7 2.2e-07 0.00016 22.0 5.4 1 25 315 339 315 340 0.95 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZSCAN29-206 - 363 1.7e-38 128.9 53.0 1 7 7.6 5.5e+03 -1.8 0.1 8 23 169 183 168 183 0.67 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZSCAN29-206 - 363 1.7e-38 128.9 53.0 2 7 4.3e-09 3.1e-06 27.4 0.8 1 23 189 211 189 211 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZSCAN29-206 - 363 1.7e-38 128.9 53.0 3 7 3.1e-09 2.3e-06 27.8 1.5 1 23 217 239 217 239 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZSCAN29-206 - 363 1.7e-38 128.9 53.0 4 7 1e-09 7.4e-07 29.3 1.5 1 23 245 267 245 267 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZSCAN29-206 - 363 1.7e-38 128.9 53.0 5 7 6.4e-09 4.6e-06 26.8 2.3 1 23 273 295 273 295 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZSCAN29-206 - 363 1.7e-38 128.9 53.0 6 7 1.3e-09 9e-07 29.0 3.5 1 23 301 323 301 323 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZSCAN29-206 - 363 1.7e-38 128.9 53.0 7 7 4.8e-07 0.00034 20.9 2.6 3 23 331 351 329 351 0.93 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZSCAN29-206 - 363 1.4e-19 69.0 48.3 1 7 5.9 4.3e+03 -0.9 0.1 8 23 169 183 168 184 0.85 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZSCAN29-206 - 363 1.4e-19 69.0 48.3 2 7 4e-06 0.0029 18.3 0.5 1 23 189 211 189 212 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZSCAN29-206 - 363 1.4e-19 69.0 48.3 3 7 1.6e-05 0.012 16.4 0.7 1 23 217 239 217 240 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZSCAN29-206 - 363 1.4e-19 69.0 48.3 4 7 2e-05 0.014 16.2 1.3 1 23 245 267 245 268 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZSCAN29-206 - 363 1.4e-19 69.0 48.3 5 7 3e-06 0.0021 18.7 1.8 1 23 273 295 273 296 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZSCAN29-206 - 363 1.4e-19 69.0 48.3 6 7 1.9e-06 0.0014 19.3 2.7 1 23 301 323 301 324 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZSCAN29-206 - 363 1.4e-19 69.0 48.3 7 7 0.0021 1.5 9.9 2.3 2 19 330 347 329 351 0.91 C2H2-type zinc finger zf-C2H2_11 PF16622.5 29 ZSCAN29-206 - 363 2e-10 40.3 28.5 1 6 2e-05 0.014 15.1 0.3 4 26 188 210 186 211 0.92 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZSCAN29-206 - 363 2e-10 40.3 28.5 2 6 0.036 26 4.7 0.0 5 14 217 226 214 238 0.84 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZSCAN29-206 - 363 2e-10 40.3 28.5 3 6 0.00027 0.19 11.5 0.9 5 21 245 261 242 265 0.84 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZSCAN29-206 - 363 2e-10 40.3 28.5 4 6 0.0046 3.3 7.5 0.3 5 26 273 294 270 295 0.84 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZSCAN29-206 - 363 2e-10 40.3 28.5 5 6 0.15 1.1e+02 2.7 0.3 7 23 303 319 300 322 0.85 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZSCAN29-206 - 363 2e-10 40.3 28.5 6 6 1.7e-05 0.012 15.4 1.1 7 24 331 348 328 351 0.91 zinc-finger C2H2-type zf_UBZ PF18439.1 32 ZSCAN29-206 - 363 7.6e-08 31.8 24.2 1 6 0.0011 0.79 9.4 0.0 3 16 189 202 187 207 0.85 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZSCAN29-206 - 363 7.6e-08 31.8 24.2 2 6 0.012 8.6 6.1 0.1 3 16 217 231 215 236 0.78 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZSCAN29-206 - 363 7.6e-08 31.8 24.2 3 6 0.012 8.3 6.1 0.6 3 15 245 257 243 264 0.83 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZSCAN29-206 - 363 7.6e-08 31.8 24.2 4 6 0.0016 1.2 8.8 0.2 3 13 273 283 271 291 0.84 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZSCAN29-206 - 363 7.6e-08 31.8 24.2 5 6 0.00037 0.27 10.9 0.4 3 20 301 319 300 320 0.88 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZSCAN29-206 - 363 7.6e-08 31.8 24.2 6 6 0.033 24 4.6 0.6 3 17 329 344 327 347 0.79 Ubiquitin-Binding Zinc Finger Zn-ribbon_8 PF09723.10 40 ZSCAN29-206 - 363 4.1e-07 30.0 31.2 1 6 6 4.3e+03 -2.1 0.1 25 31 18 25 10 33 0.73 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZSCAN29-206 - 363 4.1e-07 30.0 31.2 2 6 6.1e-05 0.043 13.9 2.2 6 35 189 225 188 227 0.87 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZSCAN29-206 - 363 4.1e-07 30.0 31.2 3 6 0.0034 2.4 8.3 6.3 6 34 217 252 216 255 0.88 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZSCAN29-206 - 363 4.1e-07 30.0 31.2 4 6 0.048 34 4.6 2.0 6 18 245 257 242 268 0.82 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZSCAN29-206 - 363 4.1e-07 30.0 31.2 5 6 4.6e-07 0.00033 20.7 2.5 6 37 273 311 272 313 0.87 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZSCAN29-206 - 363 4.1e-07 30.0 31.2 6 6 0.034 24 5.1 0.4 6 18 329 341 328 351 0.81 Zinc ribbon domain zf-C2H2_jaz PF12171.8 27 ZSCAN29-206 - 363 1e-06 28.8 25.3 1 6 0.034 24 5.3 0.0 2 21 189 208 188 209 0.88 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZSCAN29-206 - 363 1e-06 28.8 25.3 2 6 0.00055 0.39 11.1 0.1 2 21 217 236 216 237 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZSCAN29-206 - 363 1e-06 28.8 25.3 3 6 1.3 9e+02 0.3 0.8 4 24 247 267 244 267 0.88 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZSCAN29-206 - 363 1e-06 28.8 25.3 4 6 0.0001 0.075 13.4 0.5 4 21 275 292 272 293 0.90 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZSCAN29-206 - 363 1e-06 28.8 25.3 5 6 0.0005 0.36 11.2 0.2 2 20 301 319 300 323 0.89 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZSCAN29-206 - 363 1e-06 28.8 25.3 6 6 1.1 7.9e+02 0.5 2.0 4 20 331 347 329 347 0.95 Zinc-finger double-stranded RNA-binding # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN29-206.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN29-206.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN29-206.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN29-206.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN29-206.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:15:54 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN29-207.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN29-207.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN29-207.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN29-207.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN29-207.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:15:55 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- Myb_DNA-bind_4 PF13837.6 90 ZSCAN29-208 - 289 1.4e-19 70.3 0.0 1 1 5e-23 2.2e-19 69.6 0.0 2 90 126 210 125 210 0.93 Myb/SANT-like DNA-binding domain # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN29-208.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN29-208.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN29-208.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN29-208.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN29-208.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:15:55 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZSCAN30-201 - 494 2.4e-55 182.6 44.2 1 8 0.005 5 7.7 0.5 10 24 296 310 295 310 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZSCAN30-201 - 494 2.4e-55 182.6 44.2 2 8 3.7e-11 3.7e-08 33.4 0.4 2 25 316 339 315 339 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZSCAN30-201 - 494 2.4e-55 182.6 44.2 3 8 3.8e-10 3.7e-07 30.3 0.9 1 24 343 366 343 367 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZSCAN30-201 - 494 2.4e-55 182.6 44.2 4 8 7.1e-12 7.1e-09 35.7 0.2 2 25 372 395 371 396 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZSCAN30-201 - 494 2.4e-55 182.6 44.2 5 8 1.2e-09 1.2e-06 28.7 0.1 1 25 399 423 399 424 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZSCAN30-201 - 494 2.4e-55 182.6 44.2 6 8 3.1e-11 3.1e-08 33.7 0.2 4 25 430 451 428 452 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZSCAN30-201 - 494 2.4e-55 182.6 44.2 7 8 1.6e-12 1.6e-09 37.8 1.9 1 26 455 480 455 480 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZSCAN30-201 - 494 2.4e-55 182.6 44.2 8 8 0.12 1.2e+02 3.4 0.3 1 10 483 492 483 494 0.89 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZSCAN30-201 - 494 1.2e-41 138.9 40.2 1 7 1.1e-08 1.1e-05 25.6 2.0 1 23 301 323 301 323 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZSCAN30-201 - 494 1.2e-41 138.9 40.2 2 7 1.3e-08 1.3e-05 25.4 0.2 1 23 329 351 329 351 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZSCAN30-201 - 494 1.2e-41 138.9 40.2 3 7 5.5e-08 5.5e-05 23.4 0.9 1 23 357 379 357 379 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZSCAN30-201 - 494 1.2e-41 138.9 40.2 4 7 1.6e-08 1.6e-05 25.1 0.1 1 23 385 407 385 407 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZSCAN30-201 - 494 1.2e-41 138.9 40.2 5 7 0.00076 0.76 10.4 0.0 1 23 413 435 413 435 0.90 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZSCAN30-201 - 494 1.2e-41 138.9 40.2 6 7 6.9e-10 6.9e-07 29.4 0.4 1 23 441 463 441 463 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZSCAN30-201 - 494 1.2e-41 138.9 40.2 7 7 1.2e-07 0.00012 22.3 4.2 1 23 469 491 469 491 0.99 Zinc finger, C2H2 type SCAN PF02023.17 90 ZSCAN30-201 - 494 3.8e-41 138.8 6.5 1 1 8e-44 8e-41 137.8 6.5 1 89 44 132 44 133 0.98 SCAN domain zf-C2H2_4 PF13894.6 24 ZSCAN30-201 - 494 2.3e-23 80.9 40.2 1 7 0.00016 0.16 12.9 1.9 1 23 301 323 301 324 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZSCAN30-201 - 494 2.3e-23 80.9 40.2 2 7 8.3e-06 0.0083 16.9 0.3 1 23 329 351 329 352 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZSCAN30-201 - 494 2.3e-23 80.9 40.2 3 7 7.9e-06 0.0079 16.9 1.0 1 23 357 379 357 380 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZSCAN30-201 - 494 2.3e-23 80.9 40.2 4 7 5.3e-06 0.0052 17.5 0.2 1 23 385 407 385 408 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZSCAN30-201 - 494 2.3e-23 80.9 40.2 5 7 0.0049 4.9 8.3 0.0 1 23 413 435 413 436 0.90 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZSCAN30-201 - 494 2.3e-23 80.9 40.2 6 7 4.9e-06 0.0049 17.6 0.4 1 23 441 463 441 464 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZSCAN30-201 - 494 2.3e-23 80.9 40.2 7 7 4.3e-05 0.043 14.7 2.8 1 23 469 491 469 492 0.95 C2H2-type zinc finger zf-C2H2_jaz PF12171.8 27 ZSCAN30-201 - 494 2.4e-13 50.0 18.4 1 7 8.1 8.1e+03 -2.7 1.3 2 11 301 310 301 320 0.86 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZSCAN30-201 - 494 2.4e-13 50.0 18.4 2 7 0.011 11 6.4 0.0 2 22 329 349 328 349 0.90 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZSCAN30-201 - 494 2.4e-13 50.0 18.4 3 7 0.0049 4.9 7.6 0.0 2 21 357 376 356 377 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZSCAN30-201 - 494 2.4e-13 50.0 18.4 4 7 0.00032 0.32 11.3 0.0 2 22 385 405 384 405 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZSCAN30-201 - 494 2.4e-13 50.0 18.4 5 7 0.0019 1.9 8.9 0.0 2 22 413 433 412 433 0.91 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZSCAN30-201 - 494 2.4e-13 50.0 18.4 6 7 0.00031 0.31 11.4 0.2 2 22 441 461 440 461 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZSCAN30-201 - 494 2.4e-13 50.0 18.4 7 7 0.00015 0.15 12.4 0.3 2 24 469 491 468 491 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_6 PF13912.6 27 ZSCAN30-201 - 494 3e-09 36.6 43.9 1 7 5.8 5.8e+03 -2.5 2.6 2 11 301 310 300 311 0.91 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZSCAN30-201 - 494 3e-09 36.6 43.9 2 7 0.0027 2.7 8.1 0.2 2 12 329 339 329 347 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZSCAN30-201 - 494 3e-09 36.6 43.9 3 7 0.0039 3.9 7.6 0.9 2 24 357 379 357 382 0.86 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZSCAN30-201 - 494 3e-09 36.6 43.9 4 7 5.5e-06 0.0055 16.7 0.6 2 24 385 407 385 409 0.95 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZSCAN30-201 - 494 3e-09 36.6 43.9 5 7 0.071 71 3.6 0.1 2 20 413 431 412 436 0.77 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZSCAN30-201 - 494 3e-09 36.6 43.9 6 7 1e-05 0.01 15.8 0.7 2 24 441 463 441 466 0.89 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZSCAN30-201 - 494 3e-09 36.6 43.9 7 7 0.0001 0.1 12.6 2.6 2 24 469 491 469 494 0.94 C2H2-type zinc finger # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN30-201.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN30-201.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN30-201.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN30-201.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN30-201.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:15:55 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZSCAN30-202 - 494 2.4e-55 182.6 44.2 1 8 0.005 5 7.7 0.5 10 24 296 310 295 310 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZSCAN30-202 - 494 2.4e-55 182.6 44.2 2 8 3.7e-11 3.7e-08 33.4 0.4 2 25 316 339 315 339 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZSCAN30-202 - 494 2.4e-55 182.6 44.2 3 8 3.8e-10 3.7e-07 30.3 0.9 1 24 343 366 343 367 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZSCAN30-202 - 494 2.4e-55 182.6 44.2 4 8 7.1e-12 7.1e-09 35.7 0.2 2 25 372 395 371 396 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZSCAN30-202 - 494 2.4e-55 182.6 44.2 5 8 1.2e-09 1.2e-06 28.7 0.1 1 25 399 423 399 424 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZSCAN30-202 - 494 2.4e-55 182.6 44.2 6 8 3.1e-11 3.1e-08 33.7 0.2 4 25 430 451 428 452 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZSCAN30-202 - 494 2.4e-55 182.6 44.2 7 8 1.6e-12 1.6e-09 37.8 1.9 1 26 455 480 455 480 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZSCAN30-202 - 494 2.4e-55 182.6 44.2 8 8 0.12 1.2e+02 3.4 0.3 1 10 483 492 483 494 0.89 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZSCAN30-202 - 494 1.2e-41 138.9 40.2 1 7 1.1e-08 1.1e-05 25.6 2.0 1 23 301 323 301 323 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZSCAN30-202 - 494 1.2e-41 138.9 40.2 2 7 1.3e-08 1.3e-05 25.4 0.2 1 23 329 351 329 351 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZSCAN30-202 - 494 1.2e-41 138.9 40.2 3 7 5.5e-08 5.5e-05 23.4 0.9 1 23 357 379 357 379 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZSCAN30-202 - 494 1.2e-41 138.9 40.2 4 7 1.6e-08 1.6e-05 25.1 0.1 1 23 385 407 385 407 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZSCAN30-202 - 494 1.2e-41 138.9 40.2 5 7 0.00076 0.76 10.4 0.0 1 23 413 435 413 435 0.90 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZSCAN30-202 - 494 1.2e-41 138.9 40.2 6 7 6.9e-10 6.9e-07 29.4 0.4 1 23 441 463 441 463 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZSCAN30-202 - 494 1.2e-41 138.9 40.2 7 7 1.2e-07 0.00012 22.3 4.2 1 23 469 491 469 491 0.99 Zinc finger, C2H2 type SCAN PF02023.17 90 ZSCAN30-202 - 494 3.8e-41 138.8 6.5 1 1 8e-44 8e-41 137.8 6.5 1 89 44 132 44 133 0.98 SCAN domain zf-C2H2_4 PF13894.6 24 ZSCAN30-202 - 494 2.3e-23 80.9 40.2 1 7 0.00016 0.16 12.9 1.9 1 23 301 323 301 324 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZSCAN30-202 - 494 2.3e-23 80.9 40.2 2 7 8.3e-06 0.0083 16.9 0.3 1 23 329 351 329 352 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZSCAN30-202 - 494 2.3e-23 80.9 40.2 3 7 7.9e-06 0.0079 16.9 1.0 1 23 357 379 357 380 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZSCAN30-202 - 494 2.3e-23 80.9 40.2 4 7 5.3e-06 0.0052 17.5 0.2 1 23 385 407 385 408 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZSCAN30-202 - 494 2.3e-23 80.9 40.2 5 7 0.0049 4.9 8.3 0.0 1 23 413 435 413 436 0.90 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZSCAN30-202 - 494 2.3e-23 80.9 40.2 6 7 4.9e-06 0.0049 17.6 0.4 1 23 441 463 441 464 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZSCAN30-202 - 494 2.3e-23 80.9 40.2 7 7 4.3e-05 0.043 14.7 2.8 1 23 469 491 469 492 0.95 C2H2-type zinc finger zf-C2H2_jaz PF12171.8 27 ZSCAN30-202 - 494 2.4e-13 50.0 18.4 1 7 8.1 8.1e+03 -2.7 1.3 2 11 301 310 301 320 0.86 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZSCAN30-202 - 494 2.4e-13 50.0 18.4 2 7 0.011 11 6.4 0.0 2 22 329 349 328 349 0.90 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZSCAN30-202 - 494 2.4e-13 50.0 18.4 3 7 0.0049 4.9 7.6 0.0 2 21 357 376 356 377 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZSCAN30-202 - 494 2.4e-13 50.0 18.4 4 7 0.00032 0.32 11.3 0.0 2 22 385 405 384 405 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZSCAN30-202 - 494 2.4e-13 50.0 18.4 5 7 0.0019 1.9 8.9 0.0 2 22 413 433 412 433 0.91 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZSCAN30-202 - 494 2.4e-13 50.0 18.4 6 7 0.00031 0.31 11.4 0.2 2 22 441 461 440 461 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZSCAN30-202 - 494 2.4e-13 50.0 18.4 7 7 0.00015 0.15 12.4 0.3 2 24 469 491 468 491 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_6 PF13912.6 27 ZSCAN30-202 - 494 3e-09 36.6 43.9 1 7 5.8 5.8e+03 -2.5 2.6 2 11 301 310 300 311 0.91 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZSCAN30-202 - 494 3e-09 36.6 43.9 2 7 0.0027 2.7 8.1 0.2 2 12 329 339 329 347 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZSCAN30-202 - 494 3e-09 36.6 43.9 3 7 0.0039 3.9 7.6 0.9 2 24 357 379 357 382 0.86 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZSCAN30-202 - 494 3e-09 36.6 43.9 4 7 5.5e-06 0.0055 16.7 0.6 2 24 385 407 385 409 0.95 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZSCAN30-202 - 494 3e-09 36.6 43.9 5 7 0.071 71 3.6 0.1 2 20 413 431 412 436 0.77 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZSCAN30-202 - 494 3e-09 36.6 43.9 6 7 1e-05 0.01 15.8 0.7 2 24 441 463 441 466 0.89 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZSCAN30-202 - 494 3e-09 36.6 43.9 7 7 0.0001 0.1 12.6 2.6 2 24 469 491 469 494 0.94 C2H2-type zinc finger # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN30-202.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN30-202.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN30-202.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN30-202.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN30-202.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:15:56 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN30-203.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN30-203.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN30-203.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN30-203.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN30-203.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:15:56 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN30-204.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN30-204.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN30-204.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN30-204.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN30-204.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:15:57 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- SCAN PF02023.17 90 ZSCAN30-205 - 221 1.1e-41 140.5 6.5 1 1 2.9e-45 1.8e-41 139.9 6.5 1 89 44 132 44 133 0.98 SCAN domain # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN30-205.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN30-205.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN30-205.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN30-205.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN30-205.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:15:57 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZSCAN30-206 - 307 7.2e-58 190.6 41.9 1 8 0.0035 2.9 8.5 0.5 10 24 109 123 108 123 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZSCAN30-206 - 307 7.2e-58 190.6 41.9 2 8 2.5e-11 2.1e-08 34.2 0.4 2 25 129 152 128 152 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZSCAN30-206 - 307 7.2e-58 190.6 41.9 3 8 2.5e-10 2.1e-07 31.1 0.9 1 24 156 179 156 180 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZSCAN30-206 - 307 7.2e-58 190.6 41.9 4 8 4.8e-12 3.9e-09 36.5 0.2 2 25 185 208 184 209 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZSCAN30-206 - 307 7.2e-58 190.6 41.9 5 8 7.9e-10 6.5e-07 29.5 0.1 1 25 212 236 212 237 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZSCAN30-206 - 307 7.2e-58 190.6 41.9 6 8 2.1e-11 1.7e-08 34.5 0.2 4 25 243 264 241 265 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZSCAN30-206 - 307 7.2e-58 190.6 41.9 7 8 1.1e-12 8.6e-10 38.6 1.9 1 26 268 293 268 293 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZSCAN30-206 - 307 7.2e-58 190.6 41.9 8 8 0.085 69 4.1 0.3 1 10 296 305 296 307 0.89 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZSCAN30-206 - 307 2.3e-43 144.3 40.2 1 7 7.3e-09 5.9e-06 26.4 2.0 1 23 114 136 114 136 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZSCAN30-206 - 307 2.3e-43 144.3 40.2 2 7 8.8e-09 7.2e-06 26.2 0.2 1 23 142 164 142 164 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZSCAN30-206 - 307 2.3e-43 144.3 40.2 3 7 3.7e-08 3e-05 24.2 0.9 1 23 170 192 170 192 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZSCAN30-206 - 307 2.3e-43 144.3 40.2 4 7 1.1e-08 8.9e-06 25.9 0.1 1 23 198 220 198 220 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZSCAN30-206 - 307 2.3e-43 144.3 40.2 5 7 0.00052 0.42 11.2 0.0 1 23 226 248 226 248 0.90 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZSCAN30-206 - 307 2.3e-43 144.3 40.2 6 7 4.7e-10 3.8e-07 30.2 0.4 1 23 254 276 254 276 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZSCAN30-206 - 307 2.3e-43 144.3 40.2 7 7 8.4e-08 6.8e-05 23.1 4.2 1 23 282 304 282 304 0.99 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZSCAN30-206 - 307 4.7e-25 86.1 40.2 1 7 0.00011 0.09 13.7 1.9 1 23 114 136 114 137 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZSCAN30-206 - 307 4.7e-25 86.1 40.2 2 7 5.6e-06 0.0045 17.7 0.3 1 23 142 164 142 165 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZSCAN30-206 - 307 4.7e-25 86.1 40.2 3 7 5.3e-06 0.0043 17.8 1.0 1 23 170 192 170 193 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZSCAN30-206 - 307 4.7e-25 86.1 40.2 4 7 3.5e-06 0.0029 18.3 0.2 1 23 198 220 198 221 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZSCAN30-206 - 307 4.7e-25 86.1 40.2 5 7 0.0033 2.7 9.1 0.0 1 23 226 248 226 249 0.90 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZSCAN30-206 - 307 4.7e-25 86.1 40.2 6 7 3.3e-06 0.0027 18.4 0.4 1 23 254 276 254 277 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZSCAN30-206 - 307 4.7e-25 86.1 40.2 7 7 2.9e-05 0.023 15.5 2.8 1 23 282 304 282 305 0.95 C2H2-type zinc finger zf-C2H2_jaz PF12171.8 27 ZSCAN30-206 - 307 1.5e-13 50.6 23.1 1 8 9.8 8e+03 -2.7 0.2 14 22 83 91 82 92 0.82 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZSCAN30-206 - 307 1.5e-13 50.6 23.1 2 8 4.6 3.8e+03 -1.6 1.2 2 11 114 123 114 134 0.80 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZSCAN30-206 - 307 1.5e-13 50.6 23.1 3 8 0.0079 6.4 7.2 0.0 2 22 142 162 141 162 0.90 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZSCAN30-206 - 307 1.5e-13 50.6 23.1 4 8 0.0034 2.7 8.4 0.0 2 21 170 189 169 190 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZSCAN30-206 - 307 1.5e-13 50.6 23.1 5 8 0.00022 0.18 12.1 0.0 2 22 198 218 197 218 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZSCAN30-206 - 307 1.5e-13 50.6 23.1 6 8 0.0013 1.1 9.7 0.0 2 22 226 246 225 246 0.91 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZSCAN30-206 - 307 1.5e-13 50.6 23.1 7 8 0.00021 0.17 12.2 0.2 2 22 254 274 253 274 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZSCAN30-206 - 307 1.5e-13 50.6 23.1 8 8 9.9e-05 0.081 13.2 0.3 2 24 282 304 281 304 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_6 PF13912.6 27 ZSCAN30-206 - 307 6e-11 42.1 43.6 1 7 4.1 3.4e+03 -1.8 2.6 2 11 114 123 113 124 0.91 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZSCAN30-206 - 307 6e-11 42.1 43.6 2 7 0.0019 1.5 8.9 0.1 2 12 142 152 142 161 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZSCAN30-206 - 307 6e-11 42.1 43.6 3 7 0.0027 2.2 8.4 0.9 2 24 170 192 170 195 0.86 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZSCAN30-206 - 307 6e-11 42.1 43.6 4 7 3.7e-06 0.003 17.5 0.6 2 24 198 220 198 222 0.95 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZSCAN30-206 - 307 6e-11 42.1 43.6 5 7 0.046 38 4.4 0.1 2 20 226 244 225 250 0.77 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZSCAN30-206 - 307 6e-11 42.1 43.6 6 7 7e-06 0.0057 16.6 0.7 2 24 254 276 254 279 0.89 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZSCAN30-206 - 307 6e-11 42.1 43.6 7 7 7.1e-05 0.058 13.4 2.6 2 24 282 304 282 307 0.94 C2H2-type zinc finger XPA_N PF01286.18 32 ZSCAN30-206 - 307 8.4e-08 32.1 30.2 1 7 0.0012 0.95 9.6 1.1 3 14 115 126 114 132 0.89 XPA protein N-terminal XPA_N PF01286.18 32 ZSCAN30-206 - 307 8.4e-08 32.1 30.2 2 7 0.005 4.1 7.5 0.2 4 14 144 154 141 155 0.88 XPA protein N-terminal XPA_N PF01286.18 32 ZSCAN30-206 - 307 8.4e-08 32.1 30.2 3 7 0.017 14 5.8 1.1 3 14 171 182 169 183 0.88 XPA protein N-terminal XPA_N PF01286.18 32 ZSCAN30-206 - 307 8.4e-08 32.1 30.2 4 7 0.0067 5.5 7.1 0.1 3 14 199 210 197 213 0.90 XPA protein N-terminal XPA_N PF01286.18 32 ZSCAN30-206 - 307 8.4e-08 32.1 30.2 5 7 0.019 16 5.7 0.0 3 14 227 238 226 243 0.89 XPA protein N-terminal XPA_N PF01286.18 32 ZSCAN30-206 - 307 8.4e-08 32.1 30.2 6 7 0.0018 1.5 9.0 0.2 3 14 255 266 253 271 0.90 XPA protein N-terminal XPA_N PF01286.18 32 ZSCAN30-206 - 307 8.4e-08 32.1 30.2 7 7 0.039 32 4.7 0.1 3 12 283 292 281 300 0.82 XPA protein N-terminal # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN30-206.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN30-206.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN30-206.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN30-206.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN30-206.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:15:57 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN30-207.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN30-207.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN30-207.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN30-207.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN30-207.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:15:58 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- SCAN PF02023.17 90 ZSCAN30-208 - 145 4.4e-42 141.8 6.5 1 1 6.6e-46 5.9e-42 141.4 6.5 1 89 44 132 44 133 0.98 SCAN domain # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN30-208.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN30-208.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN30-208.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN30-208.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN30-208.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:15:58 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN30-209.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN30-209.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN30-209.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN30-209.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN30-209.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:15:58 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN30-210.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN30-210.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN30-210.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN30-210.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN30-210.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:15:59 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZSCAN30-211 - 307 7.2e-58 190.6 41.9 1 8 0.0035 2.9 8.5 0.5 10 24 109 123 108 123 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZSCAN30-211 - 307 7.2e-58 190.6 41.9 2 8 2.5e-11 2.1e-08 34.2 0.4 2 25 129 152 128 152 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZSCAN30-211 - 307 7.2e-58 190.6 41.9 3 8 2.5e-10 2.1e-07 31.1 0.9 1 24 156 179 156 180 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZSCAN30-211 - 307 7.2e-58 190.6 41.9 4 8 4.8e-12 3.9e-09 36.5 0.2 2 25 185 208 184 209 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZSCAN30-211 - 307 7.2e-58 190.6 41.9 5 8 7.9e-10 6.5e-07 29.5 0.1 1 25 212 236 212 237 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZSCAN30-211 - 307 7.2e-58 190.6 41.9 6 8 2.1e-11 1.7e-08 34.5 0.2 4 25 243 264 241 265 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZSCAN30-211 - 307 7.2e-58 190.6 41.9 7 8 1.1e-12 8.6e-10 38.6 1.9 1 26 268 293 268 293 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZSCAN30-211 - 307 7.2e-58 190.6 41.9 8 8 0.085 69 4.1 0.3 1 10 296 305 296 307 0.89 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZSCAN30-211 - 307 2.3e-43 144.3 40.2 1 7 7.3e-09 5.9e-06 26.4 2.0 1 23 114 136 114 136 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZSCAN30-211 - 307 2.3e-43 144.3 40.2 2 7 8.8e-09 7.2e-06 26.2 0.2 1 23 142 164 142 164 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZSCAN30-211 - 307 2.3e-43 144.3 40.2 3 7 3.7e-08 3e-05 24.2 0.9 1 23 170 192 170 192 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZSCAN30-211 - 307 2.3e-43 144.3 40.2 4 7 1.1e-08 8.9e-06 25.9 0.1 1 23 198 220 198 220 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZSCAN30-211 - 307 2.3e-43 144.3 40.2 5 7 0.00052 0.42 11.2 0.0 1 23 226 248 226 248 0.90 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZSCAN30-211 - 307 2.3e-43 144.3 40.2 6 7 4.7e-10 3.8e-07 30.2 0.4 1 23 254 276 254 276 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZSCAN30-211 - 307 2.3e-43 144.3 40.2 7 7 8.4e-08 6.8e-05 23.1 4.2 1 23 282 304 282 304 0.99 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZSCAN30-211 - 307 4.7e-25 86.1 40.2 1 7 0.00011 0.09 13.7 1.9 1 23 114 136 114 137 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZSCAN30-211 - 307 4.7e-25 86.1 40.2 2 7 5.6e-06 0.0045 17.7 0.3 1 23 142 164 142 165 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZSCAN30-211 - 307 4.7e-25 86.1 40.2 3 7 5.3e-06 0.0043 17.8 1.0 1 23 170 192 170 193 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZSCAN30-211 - 307 4.7e-25 86.1 40.2 4 7 3.5e-06 0.0029 18.3 0.2 1 23 198 220 198 221 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZSCAN30-211 - 307 4.7e-25 86.1 40.2 5 7 0.0033 2.7 9.1 0.0 1 23 226 248 226 249 0.90 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZSCAN30-211 - 307 4.7e-25 86.1 40.2 6 7 3.3e-06 0.0027 18.4 0.4 1 23 254 276 254 277 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZSCAN30-211 - 307 4.7e-25 86.1 40.2 7 7 2.9e-05 0.023 15.5 2.8 1 23 282 304 282 305 0.95 C2H2-type zinc finger zf-C2H2_jaz PF12171.8 27 ZSCAN30-211 - 307 1.5e-13 50.6 23.1 1 8 9.8 8e+03 -2.7 0.2 14 22 83 91 82 92 0.82 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZSCAN30-211 - 307 1.5e-13 50.6 23.1 2 8 4.6 3.8e+03 -1.6 1.2 2 11 114 123 114 134 0.80 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZSCAN30-211 - 307 1.5e-13 50.6 23.1 3 8 0.0079 6.4 7.2 0.0 2 22 142 162 141 162 0.90 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZSCAN30-211 - 307 1.5e-13 50.6 23.1 4 8 0.0034 2.7 8.4 0.0 2 21 170 189 169 190 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZSCAN30-211 - 307 1.5e-13 50.6 23.1 5 8 0.00022 0.18 12.1 0.0 2 22 198 218 197 218 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZSCAN30-211 - 307 1.5e-13 50.6 23.1 6 8 0.0013 1.1 9.7 0.0 2 22 226 246 225 246 0.91 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZSCAN30-211 - 307 1.5e-13 50.6 23.1 7 8 0.00021 0.17 12.2 0.2 2 22 254 274 253 274 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZSCAN30-211 - 307 1.5e-13 50.6 23.1 8 8 9.9e-05 0.081 13.2 0.3 2 24 282 304 281 304 0.94 Zinc-finger double-stranded RNA-binding zf-C2H2_6 PF13912.6 27 ZSCAN30-211 - 307 6e-11 42.1 43.6 1 7 4.1 3.4e+03 -1.8 2.6 2 11 114 123 113 124 0.91 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZSCAN30-211 - 307 6e-11 42.1 43.6 2 7 0.0019 1.5 8.9 0.1 2 12 142 152 142 161 0.94 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZSCAN30-211 - 307 6e-11 42.1 43.6 3 7 0.0027 2.2 8.4 0.9 2 24 170 192 170 195 0.86 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZSCAN30-211 - 307 6e-11 42.1 43.6 4 7 3.7e-06 0.003 17.5 0.6 2 24 198 220 198 222 0.95 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZSCAN30-211 - 307 6e-11 42.1 43.6 5 7 0.046 38 4.4 0.1 2 20 226 244 225 250 0.77 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZSCAN30-211 - 307 6e-11 42.1 43.6 6 7 7e-06 0.0057 16.6 0.7 2 24 254 276 254 279 0.89 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZSCAN30-211 - 307 6e-11 42.1 43.6 7 7 7.1e-05 0.058 13.4 2.6 2 24 282 304 282 307 0.94 C2H2-type zinc finger XPA_N PF01286.18 32 ZSCAN30-211 - 307 8.4e-08 32.1 30.2 1 7 0.0012 0.95 9.6 1.1 3 14 115 126 114 132 0.89 XPA protein N-terminal XPA_N PF01286.18 32 ZSCAN30-211 - 307 8.4e-08 32.1 30.2 2 7 0.005 4.1 7.5 0.2 4 14 144 154 141 155 0.88 XPA protein N-terminal XPA_N PF01286.18 32 ZSCAN30-211 - 307 8.4e-08 32.1 30.2 3 7 0.017 14 5.8 1.1 3 14 171 182 169 183 0.88 XPA protein N-terminal XPA_N PF01286.18 32 ZSCAN30-211 - 307 8.4e-08 32.1 30.2 4 7 0.0067 5.5 7.1 0.1 3 14 199 210 197 213 0.90 XPA protein N-terminal XPA_N PF01286.18 32 ZSCAN30-211 - 307 8.4e-08 32.1 30.2 5 7 0.019 16 5.7 0.0 3 14 227 238 226 243 0.89 XPA protein N-terminal XPA_N PF01286.18 32 ZSCAN30-211 - 307 8.4e-08 32.1 30.2 6 7 0.0018 1.5 9.0 0.2 3 14 255 266 253 271 0.90 XPA protein N-terminal XPA_N PF01286.18 32 ZSCAN30-211 - 307 8.4e-08 32.1 30.2 7 7 0.039 32 4.7 0.1 3 12 283 292 281 300 0.82 XPA protein N-terminal # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN30-211.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN30-211.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN30-211.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN30-211.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN30-211.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:15:59 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN30-212.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN30-212.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN30-212.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN30-212.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN30-212.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:16:00 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZSCAN31-201 - 406 3.5e-53 175.8 40.6 1 8 8.3 5.5e+03 -1.9 0.2 7 12 100 105 99 106 0.83 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZSCAN31-201 - 406 3.5e-53 175.8 40.6 2 8 9.1e-05 0.061 13.8 0.4 10 26 234 250 230 250 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZSCAN31-201 - 406 3.5e-53 175.8 40.6 3 8 1.2e-11 7.9e-09 35.5 0.2 4 25 256 277 254 278 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZSCAN31-201 - 406 3.5e-53 175.8 40.6 4 8 2.3e-12 1.5e-09 37.8 0.5 1 25 281 305 281 306 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZSCAN31-201 - 406 3.5e-53 175.8 40.6 5 8 6.4e-13 4.2e-10 39.6 0.4 1 24 309 332 309 333 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZSCAN31-201 - 406 3.5e-53 175.8 40.6 6 8 1.2e-10 8e-08 32.4 0.1 2 24 338 360 338 362 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZSCAN31-201 - 406 3.5e-53 175.8 40.6 7 8 3.7e-11 2.4e-08 34.0 0.5 2 25 366 389 365 390 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZSCAN31-201 - 406 3.5e-53 175.8 40.6 8 8 0.0025 1.6 9.3 0.6 2 14 394 406 394 406 0.95 Zinc-finger double domain SCAN PF02023.17 90 ZSCAN31-201 - 406 3e-45 151.9 6.4 1 1 1.5e-47 1e-44 150.3 6.4 1 89 35 123 35 124 0.98 SCAN domain zf-C2H2 PF00096.26 23 ZSCAN31-201 - 406 1.5e-32 110.2 37.4 1 6 1e-07 6.8e-05 23.1 1.4 1 23 239 261 239 261 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZSCAN31-201 - 406 1.5e-32 110.2 37.4 2 6 3.9e-09 2.6e-06 27.6 0.7 1 23 267 289 267 289 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZSCAN31-201 - 406 1.5e-32 110.2 37.4 3 6 1.4e-08 9.2e-06 25.8 0.4 1 23 295 317 295 317 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZSCAN31-201 - 406 1.5e-32 110.2 37.4 4 6 2.4e-05 0.016 15.6 0.9 1 23 323 345 323 345 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZSCAN31-201 - 406 1.5e-32 110.2 37.4 5 6 1.7e-07 0.00011 22.4 0.1 1 23 351 373 351 373 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZSCAN31-201 - 406 1.5e-32 110.2 37.4 6 6 3.4e-06 0.0022 18.3 3.0 1 23 379 401 379 401 0.99 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZSCAN31-201 - 406 2.8e-20 71.2 37.5 1 6 0.00023 0.15 13.0 1.1 1 23 239 261 239 262 0.84 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZSCAN31-201 - 406 2.8e-20 71.2 37.5 2 6 3e-06 0.002 18.8 0.7 1 23 267 289 267 290 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZSCAN31-201 - 406 2.8e-20 71.2 37.5 3 6 4.4e-06 0.0029 18.3 0.3 1 23 295 317 295 318 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZSCAN31-201 - 406 2.8e-20 71.2 37.5 4 6 0.00025 0.17 12.8 1.5 1 23 323 345 323 346 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZSCAN31-201 - 406 2.8e-20 71.2 37.5 5 6 4.1e-05 0.027 15.3 0.2 1 23 351 373 351 374 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZSCAN31-201 - 406 2.8e-20 71.2 37.5 6 6 2.5e-05 0.016 16.0 2.5 1 23 379 401 379 402 0.85 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZSCAN31-201 - 406 3.9e-15 55.4 36.8 1 6 3e-06 0.002 18.1 0.8 1 24 238 261 238 264 0.90 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZSCAN31-201 - 406 3.9e-15 55.4 36.8 2 6 1.2e-07 8e-05 22.5 1.0 2 24 267 289 267 292 0.96 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZSCAN31-201 - 406 3.9e-15 55.4 36.8 3 6 0.00011 0.07 13.1 0.5 2 24 295 317 295 320 0.91 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZSCAN31-201 - 406 3.9e-15 55.4 36.8 4 6 0.0019 1.3 9.1 0.9 2 11 323 332 323 332 0.96 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZSCAN31-201 - 406 3.9e-15 55.4 36.8 5 6 0.018 12 6.0 0.2 1 11 350 360 350 374 0.81 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZSCAN31-201 - 406 3.9e-15 55.4 36.8 6 6 0.0022 1.4 9.0 1.9 2 20 379 397 379 403 0.78 C2H2-type zinc finger zf-C2H2_11 PF16622.5 29 ZSCAN31-201 - 406 5.4e-09 35.7 30.9 1 6 0.0024 1.6 8.6 0.7 5 26 239 260 236 261 0.89 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZSCAN31-201 - 406 5.4e-09 35.7 30.9 2 6 0.00033 0.22 11.3 0.1 6 25 268 287 265 288 0.93 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZSCAN31-201 - 406 5.4e-09 35.7 30.9 3 6 6.8e-07 0.00045 19.9 0.1 5 26 295 316 292 317 0.95 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZSCAN31-201 - 406 5.4e-09 35.7 30.9 4 6 2 1.3e+03 -0.8 1.1 7 25 325 343 322 345 0.65 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZSCAN31-201 - 406 5.4e-09 35.7 30.9 5 6 0.0027 1.8 8.4 0.3 5 25 351 371 348 373 0.82 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZSCAN31-201 - 406 5.4e-09 35.7 30.9 6 6 0.0097 6.5 6.6 1.3 5 26 379 400 376 401 0.92 zinc-finger C2H2-type Zn-ribbon_8 PF09723.10 40 ZSCAN31-201 - 406 1.9e-07 31.1 25.5 1 5 1.3e-05 0.0085 16.2 4.3 7 38 240 278 238 280 0.91 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZSCAN31-201 - 406 1.9e-07 31.1 25.5 2 5 0.00087 0.58 10.3 0.6 6 22 267 283 265 289 0.85 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZSCAN31-201 - 406 1.9e-07 31.1 25.5 3 5 2.2e-05 0.014 15.5 1.7 6 34 295 330 294 333 0.90 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZSCAN31-201 - 406 1.9e-07 31.1 25.5 4 5 0.0029 1.9 8.7 3.4 6 34 351 386 349 393 0.75 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZSCAN31-201 - 406 1.9e-07 31.1 25.5 5 5 0.089 59 3.9 0.2 6 18 379 391 377 402 0.80 Zinc ribbon domain zf-C2H2_jaz PF12171.8 27 ZSCAN31-201 - 406 9.8e-07 28.9 21.8 1 6 0.002 1.3 9.4 0.2 2 22 239 259 238 259 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZSCAN31-201 - 406 9.8e-07 28.9 21.8 2 6 2.3e-05 0.015 15.5 0.1 2 24 267 289 266 289 0.95 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZSCAN31-201 - 406 9.8e-07 28.9 21.8 3 6 0.049 32 4.9 0.0 4 21 297 314 294 315 0.86 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZSCAN31-201 - 406 9.8e-07 28.9 21.8 4 6 0.11 70 3.9 0.4 2 11 323 332 322 343 0.85 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZSCAN31-201 - 406 9.8e-07 28.9 21.8 5 6 3.3 2.2e+03 -0.9 0.1 4 12 353 361 350 371 0.80 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZSCAN31-201 - 406 9.8e-07 28.9 21.8 6 6 0.013 8.9 6.7 0.8 4 22 381 399 378 399 0.92 Zinc-finger double-stranded RNA-binding # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN31-201.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN31-201.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN31-201.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN31-201.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN31-201.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:16:00 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZSCAN31-202 - 406 3.5e-53 175.8 40.6 1 8 8.3 5.5e+03 -1.9 0.2 7 12 100 105 99 106 0.83 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZSCAN31-202 - 406 3.5e-53 175.8 40.6 2 8 9.1e-05 0.061 13.8 0.4 10 26 234 250 230 250 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZSCAN31-202 - 406 3.5e-53 175.8 40.6 3 8 1.2e-11 7.9e-09 35.5 0.2 4 25 256 277 254 278 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZSCAN31-202 - 406 3.5e-53 175.8 40.6 4 8 2.3e-12 1.5e-09 37.8 0.5 1 25 281 305 281 306 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZSCAN31-202 - 406 3.5e-53 175.8 40.6 5 8 6.4e-13 4.2e-10 39.6 0.4 1 24 309 332 309 333 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZSCAN31-202 - 406 3.5e-53 175.8 40.6 6 8 1.2e-10 8e-08 32.4 0.1 2 24 338 360 338 362 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZSCAN31-202 - 406 3.5e-53 175.8 40.6 7 8 3.7e-11 2.4e-08 34.0 0.5 2 25 366 389 365 390 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZSCAN31-202 - 406 3.5e-53 175.8 40.6 8 8 0.0025 1.6 9.3 0.6 2 14 394 406 394 406 0.95 Zinc-finger double domain SCAN PF02023.17 90 ZSCAN31-202 - 406 3e-45 151.9 6.4 1 1 1.5e-47 1e-44 150.3 6.4 1 89 35 123 35 124 0.98 SCAN domain zf-C2H2 PF00096.26 23 ZSCAN31-202 - 406 1.5e-32 110.2 37.4 1 6 1e-07 6.8e-05 23.1 1.4 1 23 239 261 239 261 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZSCAN31-202 - 406 1.5e-32 110.2 37.4 2 6 3.9e-09 2.6e-06 27.6 0.7 1 23 267 289 267 289 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZSCAN31-202 - 406 1.5e-32 110.2 37.4 3 6 1.4e-08 9.2e-06 25.8 0.4 1 23 295 317 295 317 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZSCAN31-202 - 406 1.5e-32 110.2 37.4 4 6 2.4e-05 0.016 15.6 0.9 1 23 323 345 323 345 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZSCAN31-202 - 406 1.5e-32 110.2 37.4 5 6 1.7e-07 0.00011 22.4 0.1 1 23 351 373 351 373 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZSCAN31-202 - 406 1.5e-32 110.2 37.4 6 6 3.4e-06 0.0022 18.3 3.0 1 23 379 401 379 401 0.99 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZSCAN31-202 - 406 2.8e-20 71.2 37.5 1 6 0.00023 0.15 13.0 1.1 1 23 239 261 239 262 0.84 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZSCAN31-202 - 406 2.8e-20 71.2 37.5 2 6 3e-06 0.002 18.8 0.7 1 23 267 289 267 290 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZSCAN31-202 - 406 2.8e-20 71.2 37.5 3 6 4.4e-06 0.0029 18.3 0.3 1 23 295 317 295 318 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZSCAN31-202 - 406 2.8e-20 71.2 37.5 4 6 0.00025 0.17 12.8 1.5 1 23 323 345 323 346 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZSCAN31-202 - 406 2.8e-20 71.2 37.5 5 6 4.1e-05 0.027 15.3 0.2 1 23 351 373 351 374 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZSCAN31-202 - 406 2.8e-20 71.2 37.5 6 6 2.5e-05 0.016 16.0 2.5 1 23 379 401 379 402 0.85 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZSCAN31-202 - 406 3.9e-15 55.4 36.8 1 6 3e-06 0.002 18.1 0.8 1 24 238 261 238 264 0.90 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZSCAN31-202 - 406 3.9e-15 55.4 36.8 2 6 1.2e-07 8e-05 22.5 1.0 2 24 267 289 267 292 0.96 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZSCAN31-202 - 406 3.9e-15 55.4 36.8 3 6 0.00011 0.07 13.1 0.5 2 24 295 317 295 320 0.91 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZSCAN31-202 - 406 3.9e-15 55.4 36.8 4 6 0.0019 1.3 9.1 0.9 2 11 323 332 323 332 0.96 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZSCAN31-202 - 406 3.9e-15 55.4 36.8 5 6 0.018 12 6.0 0.2 1 11 350 360 350 374 0.81 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZSCAN31-202 - 406 3.9e-15 55.4 36.8 6 6 0.0022 1.4 9.0 1.9 2 20 379 397 379 403 0.78 C2H2-type zinc finger zf-C2H2_11 PF16622.5 29 ZSCAN31-202 - 406 5.4e-09 35.7 30.9 1 6 0.0024 1.6 8.6 0.7 5 26 239 260 236 261 0.89 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZSCAN31-202 - 406 5.4e-09 35.7 30.9 2 6 0.00033 0.22 11.3 0.1 6 25 268 287 265 288 0.93 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZSCAN31-202 - 406 5.4e-09 35.7 30.9 3 6 6.8e-07 0.00045 19.9 0.1 5 26 295 316 292 317 0.95 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZSCAN31-202 - 406 5.4e-09 35.7 30.9 4 6 2 1.3e+03 -0.8 1.1 7 25 325 343 322 345 0.65 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZSCAN31-202 - 406 5.4e-09 35.7 30.9 5 6 0.0027 1.8 8.4 0.3 5 25 351 371 348 373 0.82 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZSCAN31-202 - 406 5.4e-09 35.7 30.9 6 6 0.0097 6.5 6.6 1.3 5 26 379 400 376 401 0.92 zinc-finger C2H2-type Zn-ribbon_8 PF09723.10 40 ZSCAN31-202 - 406 1.9e-07 31.1 25.5 1 5 1.3e-05 0.0085 16.2 4.3 7 38 240 278 238 280 0.91 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZSCAN31-202 - 406 1.9e-07 31.1 25.5 2 5 0.00087 0.58 10.3 0.6 6 22 267 283 265 289 0.85 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZSCAN31-202 - 406 1.9e-07 31.1 25.5 3 5 2.2e-05 0.014 15.5 1.7 6 34 295 330 294 333 0.90 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZSCAN31-202 - 406 1.9e-07 31.1 25.5 4 5 0.0029 1.9 8.7 3.4 6 34 351 386 349 393 0.75 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZSCAN31-202 - 406 1.9e-07 31.1 25.5 5 5 0.089 59 3.9 0.2 6 18 379 391 377 402 0.80 Zinc ribbon domain zf-C2H2_jaz PF12171.8 27 ZSCAN31-202 - 406 9.8e-07 28.9 21.8 1 6 0.002 1.3 9.4 0.2 2 22 239 259 238 259 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZSCAN31-202 - 406 9.8e-07 28.9 21.8 2 6 2.3e-05 0.015 15.5 0.1 2 24 267 289 266 289 0.95 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZSCAN31-202 - 406 9.8e-07 28.9 21.8 3 6 0.049 32 4.9 0.0 4 21 297 314 294 315 0.86 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZSCAN31-202 - 406 9.8e-07 28.9 21.8 4 6 0.11 70 3.9 0.4 2 11 323 332 322 343 0.85 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZSCAN31-202 - 406 9.8e-07 28.9 21.8 5 6 3.3 2.2e+03 -0.9 0.1 4 12 353 361 350 371 0.80 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZSCAN31-202 - 406 9.8e-07 28.9 21.8 6 6 0.013 8.9 6.7 0.8 4 22 381 399 378 399 0.92 Zinc-finger double-stranded RNA-binding # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN31-202.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN31-202.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN31-202.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN31-202.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN31-202.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:16:01 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZSCAN31-203 - 406 3.5e-53 175.8 40.6 1 8 8.3 5.5e+03 -1.9 0.2 7 12 100 105 99 106 0.83 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZSCAN31-203 - 406 3.5e-53 175.8 40.6 2 8 9.1e-05 0.061 13.8 0.4 10 26 234 250 230 250 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZSCAN31-203 - 406 3.5e-53 175.8 40.6 3 8 1.2e-11 7.9e-09 35.5 0.2 4 25 256 277 254 278 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZSCAN31-203 - 406 3.5e-53 175.8 40.6 4 8 2.3e-12 1.5e-09 37.8 0.5 1 25 281 305 281 306 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZSCAN31-203 - 406 3.5e-53 175.8 40.6 5 8 6.4e-13 4.2e-10 39.6 0.4 1 24 309 332 309 333 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZSCAN31-203 - 406 3.5e-53 175.8 40.6 6 8 1.2e-10 8e-08 32.4 0.1 2 24 338 360 338 362 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZSCAN31-203 - 406 3.5e-53 175.8 40.6 7 8 3.7e-11 2.4e-08 34.0 0.5 2 25 366 389 365 390 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZSCAN31-203 - 406 3.5e-53 175.8 40.6 8 8 0.0025 1.6 9.3 0.6 2 14 394 406 394 406 0.95 Zinc-finger double domain SCAN PF02023.17 90 ZSCAN31-203 - 406 3e-45 151.9 6.4 1 1 1.5e-47 1e-44 150.3 6.4 1 89 35 123 35 124 0.98 SCAN domain zf-C2H2 PF00096.26 23 ZSCAN31-203 - 406 1.5e-32 110.2 37.4 1 6 1e-07 6.8e-05 23.1 1.4 1 23 239 261 239 261 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZSCAN31-203 - 406 1.5e-32 110.2 37.4 2 6 3.9e-09 2.6e-06 27.6 0.7 1 23 267 289 267 289 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZSCAN31-203 - 406 1.5e-32 110.2 37.4 3 6 1.4e-08 9.2e-06 25.8 0.4 1 23 295 317 295 317 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZSCAN31-203 - 406 1.5e-32 110.2 37.4 4 6 2.4e-05 0.016 15.6 0.9 1 23 323 345 323 345 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZSCAN31-203 - 406 1.5e-32 110.2 37.4 5 6 1.7e-07 0.00011 22.4 0.1 1 23 351 373 351 373 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZSCAN31-203 - 406 1.5e-32 110.2 37.4 6 6 3.4e-06 0.0022 18.3 3.0 1 23 379 401 379 401 0.99 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZSCAN31-203 - 406 2.8e-20 71.2 37.5 1 6 0.00023 0.15 13.0 1.1 1 23 239 261 239 262 0.84 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZSCAN31-203 - 406 2.8e-20 71.2 37.5 2 6 3e-06 0.002 18.8 0.7 1 23 267 289 267 290 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZSCAN31-203 - 406 2.8e-20 71.2 37.5 3 6 4.4e-06 0.0029 18.3 0.3 1 23 295 317 295 318 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZSCAN31-203 - 406 2.8e-20 71.2 37.5 4 6 0.00025 0.17 12.8 1.5 1 23 323 345 323 346 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZSCAN31-203 - 406 2.8e-20 71.2 37.5 5 6 4.1e-05 0.027 15.3 0.2 1 23 351 373 351 374 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZSCAN31-203 - 406 2.8e-20 71.2 37.5 6 6 2.5e-05 0.016 16.0 2.5 1 23 379 401 379 402 0.85 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZSCAN31-203 - 406 3.9e-15 55.4 36.8 1 6 3e-06 0.002 18.1 0.8 1 24 238 261 238 264 0.90 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZSCAN31-203 - 406 3.9e-15 55.4 36.8 2 6 1.2e-07 8e-05 22.5 1.0 2 24 267 289 267 292 0.96 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZSCAN31-203 - 406 3.9e-15 55.4 36.8 3 6 0.00011 0.07 13.1 0.5 2 24 295 317 295 320 0.91 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZSCAN31-203 - 406 3.9e-15 55.4 36.8 4 6 0.0019 1.3 9.1 0.9 2 11 323 332 323 332 0.96 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZSCAN31-203 - 406 3.9e-15 55.4 36.8 5 6 0.018 12 6.0 0.2 1 11 350 360 350 374 0.81 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZSCAN31-203 - 406 3.9e-15 55.4 36.8 6 6 0.0022 1.4 9.0 1.9 2 20 379 397 379 403 0.78 C2H2-type zinc finger zf-C2H2_11 PF16622.5 29 ZSCAN31-203 - 406 5.4e-09 35.7 30.9 1 6 0.0024 1.6 8.6 0.7 5 26 239 260 236 261 0.89 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZSCAN31-203 - 406 5.4e-09 35.7 30.9 2 6 0.00033 0.22 11.3 0.1 6 25 268 287 265 288 0.93 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZSCAN31-203 - 406 5.4e-09 35.7 30.9 3 6 6.8e-07 0.00045 19.9 0.1 5 26 295 316 292 317 0.95 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZSCAN31-203 - 406 5.4e-09 35.7 30.9 4 6 2 1.3e+03 -0.8 1.1 7 25 325 343 322 345 0.65 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZSCAN31-203 - 406 5.4e-09 35.7 30.9 5 6 0.0027 1.8 8.4 0.3 5 25 351 371 348 373 0.82 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZSCAN31-203 - 406 5.4e-09 35.7 30.9 6 6 0.0097 6.5 6.6 1.3 5 26 379 400 376 401 0.92 zinc-finger C2H2-type Zn-ribbon_8 PF09723.10 40 ZSCAN31-203 - 406 1.9e-07 31.1 25.5 1 5 1.3e-05 0.0085 16.2 4.3 7 38 240 278 238 280 0.91 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZSCAN31-203 - 406 1.9e-07 31.1 25.5 2 5 0.00087 0.58 10.3 0.6 6 22 267 283 265 289 0.85 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZSCAN31-203 - 406 1.9e-07 31.1 25.5 3 5 2.2e-05 0.014 15.5 1.7 6 34 295 330 294 333 0.90 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZSCAN31-203 - 406 1.9e-07 31.1 25.5 4 5 0.0029 1.9 8.7 3.4 6 34 351 386 349 393 0.75 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZSCAN31-203 - 406 1.9e-07 31.1 25.5 5 5 0.089 59 3.9 0.2 6 18 379 391 377 402 0.80 Zinc ribbon domain zf-C2H2_jaz PF12171.8 27 ZSCAN31-203 - 406 9.8e-07 28.9 21.8 1 6 0.002 1.3 9.4 0.2 2 22 239 259 238 259 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZSCAN31-203 - 406 9.8e-07 28.9 21.8 2 6 2.3e-05 0.015 15.5 0.1 2 24 267 289 266 289 0.95 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZSCAN31-203 - 406 9.8e-07 28.9 21.8 3 6 0.049 32 4.9 0.0 4 21 297 314 294 315 0.86 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZSCAN31-203 - 406 9.8e-07 28.9 21.8 4 6 0.11 70 3.9 0.4 2 11 323 332 322 343 0.85 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZSCAN31-203 - 406 9.8e-07 28.9 21.8 5 6 3.3 2.2e+03 -0.9 0.1 4 12 353 361 350 371 0.80 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZSCAN31-203 - 406 9.8e-07 28.9 21.8 6 6 0.013 8.9 6.7 0.8 4 22 381 399 378 399 0.92 Zinc-finger double-stranded RNA-binding # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN31-203.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN31-203.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN31-203.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN31-203.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN31-203.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:16:01 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN31-204.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN31-204.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN31-204.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN31-204.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN31-204.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:16:01 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN31-205.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN31-205.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN31-205.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN31-205.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN31-205.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:16:02 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN31-206.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN31-206.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN31-206.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN31-206.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN31-206.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:16:02 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN31-207.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN31-207.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN31-207.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN31-207.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN31-207.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:16:02 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN31-208.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN31-208.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN31-208.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN31-208.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN31-208.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:16:03 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZSCAN31-209 - 406 3.5e-53 175.8 40.6 1 8 8.3 5.5e+03 -1.9 0.2 7 12 100 105 99 106 0.83 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZSCAN31-209 - 406 3.5e-53 175.8 40.6 2 8 9.1e-05 0.061 13.8 0.4 10 26 234 250 230 250 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZSCAN31-209 - 406 3.5e-53 175.8 40.6 3 8 1.2e-11 7.9e-09 35.5 0.2 4 25 256 277 254 278 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZSCAN31-209 - 406 3.5e-53 175.8 40.6 4 8 2.3e-12 1.5e-09 37.8 0.5 1 25 281 305 281 306 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZSCAN31-209 - 406 3.5e-53 175.8 40.6 5 8 6.4e-13 4.2e-10 39.6 0.4 1 24 309 332 309 333 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZSCAN31-209 - 406 3.5e-53 175.8 40.6 6 8 1.2e-10 8e-08 32.4 0.1 2 24 338 360 338 362 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZSCAN31-209 - 406 3.5e-53 175.8 40.6 7 8 3.7e-11 2.4e-08 34.0 0.5 2 25 366 389 365 390 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZSCAN31-209 - 406 3.5e-53 175.8 40.6 8 8 0.0025 1.6 9.3 0.6 2 14 394 406 394 406 0.95 Zinc-finger double domain SCAN PF02023.17 90 ZSCAN31-209 - 406 3e-45 151.9 6.4 1 1 1.5e-47 1e-44 150.3 6.4 1 89 35 123 35 124 0.98 SCAN domain zf-C2H2 PF00096.26 23 ZSCAN31-209 - 406 1.5e-32 110.2 37.4 1 6 1e-07 6.8e-05 23.1 1.4 1 23 239 261 239 261 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZSCAN31-209 - 406 1.5e-32 110.2 37.4 2 6 3.9e-09 2.6e-06 27.6 0.7 1 23 267 289 267 289 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZSCAN31-209 - 406 1.5e-32 110.2 37.4 3 6 1.4e-08 9.2e-06 25.8 0.4 1 23 295 317 295 317 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZSCAN31-209 - 406 1.5e-32 110.2 37.4 4 6 2.4e-05 0.016 15.6 0.9 1 23 323 345 323 345 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZSCAN31-209 - 406 1.5e-32 110.2 37.4 5 6 1.7e-07 0.00011 22.4 0.1 1 23 351 373 351 373 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZSCAN31-209 - 406 1.5e-32 110.2 37.4 6 6 3.4e-06 0.0022 18.3 3.0 1 23 379 401 379 401 0.99 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZSCAN31-209 - 406 2.8e-20 71.2 37.5 1 6 0.00023 0.15 13.0 1.1 1 23 239 261 239 262 0.84 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZSCAN31-209 - 406 2.8e-20 71.2 37.5 2 6 3e-06 0.002 18.8 0.7 1 23 267 289 267 290 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZSCAN31-209 - 406 2.8e-20 71.2 37.5 3 6 4.4e-06 0.0029 18.3 0.3 1 23 295 317 295 318 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZSCAN31-209 - 406 2.8e-20 71.2 37.5 4 6 0.00025 0.17 12.8 1.5 1 23 323 345 323 346 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZSCAN31-209 - 406 2.8e-20 71.2 37.5 5 6 4.1e-05 0.027 15.3 0.2 1 23 351 373 351 374 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZSCAN31-209 - 406 2.8e-20 71.2 37.5 6 6 2.5e-05 0.016 16.0 2.5 1 23 379 401 379 402 0.85 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZSCAN31-209 - 406 3.9e-15 55.4 36.8 1 6 3e-06 0.002 18.1 0.8 1 24 238 261 238 264 0.90 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZSCAN31-209 - 406 3.9e-15 55.4 36.8 2 6 1.2e-07 8e-05 22.5 1.0 2 24 267 289 267 292 0.96 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZSCAN31-209 - 406 3.9e-15 55.4 36.8 3 6 0.00011 0.07 13.1 0.5 2 24 295 317 295 320 0.91 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZSCAN31-209 - 406 3.9e-15 55.4 36.8 4 6 0.0019 1.3 9.1 0.9 2 11 323 332 323 332 0.96 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZSCAN31-209 - 406 3.9e-15 55.4 36.8 5 6 0.018 12 6.0 0.2 1 11 350 360 350 374 0.81 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZSCAN31-209 - 406 3.9e-15 55.4 36.8 6 6 0.0022 1.4 9.0 1.9 2 20 379 397 379 403 0.78 C2H2-type zinc finger zf-C2H2_11 PF16622.5 29 ZSCAN31-209 - 406 5.4e-09 35.7 30.9 1 6 0.0024 1.6 8.6 0.7 5 26 239 260 236 261 0.89 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZSCAN31-209 - 406 5.4e-09 35.7 30.9 2 6 0.00033 0.22 11.3 0.1 6 25 268 287 265 288 0.93 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZSCAN31-209 - 406 5.4e-09 35.7 30.9 3 6 6.8e-07 0.00045 19.9 0.1 5 26 295 316 292 317 0.95 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZSCAN31-209 - 406 5.4e-09 35.7 30.9 4 6 2 1.3e+03 -0.8 1.1 7 25 325 343 322 345 0.65 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZSCAN31-209 - 406 5.4e-09 35.7 30.9 5 6 0.0027 1.8 8.4 0.3 5 25 351 371 348 373 0.82 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZSCAN31-209 - 406 5.4e-09 35.7 30.9 6 6 0.0097 6.5 6.6 1.3 5 26 379 400 376 401 0.92 zinc-finger C2H2-type Zn-ribbon_8 PF09723.10 40 ZSCAN31-209 - 406 1.9e-07 31.1 25.5 1 5 1.3e-05 0.0085 16.2 4.3 7 38 240 278 238 280 0.91 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZSCAN31-209 - 406 1.9e-07 31.1 25.5 2 5 0.00087 0.58 10.3 0.6 6 22 267 283 265 289 0.85 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZSCAN31-209 - 406 1.9e-07 31.1 25.5 3 5 2.2e-05 0.014 15.5 1.7 6 34 295 330 294 333 0.90 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZSCAN31-209 - 406 1.9e-07 31.1 25.5 4 5 0.0029 1.9 8.7 3.4 6 34 351 386 349 393 0.75 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZSCAN31-209 - 406 1.9e-07 31.1 25.5 5 5 0.089 59 3.9 0.2 6 18 379 391 377 402 0.80 Zinc ribbon domain zf-C2H2_jaz PF12171.8 27 ZSCAN31-209 - 406 9.8e-07 28.9 21.8 1 6 0.002 1.3 9.4 0.2 2 22 239 259 238 259 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZSCAN31-209 - 406 9.8e-07 28.9 21.8 2 6 2.3e-05 0.015 15.5 0.1 2 24 267 289 266 289 0.95 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZSCAN31-209 - 406 9.8e-07 28.9 21.8 3 6 0.049 32 4.9 0.0 4 21 297 314 294 315 0.86 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZSCAN31-209 - 406 9.8e-07 28.9 21.8 4 6 0.11 70 3.9 0.4 2 11 323 332 322 343 0.85 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZSCAN31-209 - 406 9.8e-07 28.9 21.8 5 6 3.3 2.2e+03 -0.9 0.1 4 12 353 361 350 371 0.80 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZSCAN31-209 - 406 9.8e-07 28.9 21.8 6 6 0.013 8.9 6.7 0.8 4 22 381 399 378 399 0.92 Zinc-finger double-stranded RNA-binding # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN31-209.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN31-209.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN31-209.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN31-209.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN31-209.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:16:03 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN31-210.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN31-210.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN31-210.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN31-210.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN31-210.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:16:03 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN31-211.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN31-211.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN31-211.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN31-211.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN31-211.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:16:04 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN31-212.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN31-212.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN31-212.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN31-212.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN31-212.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:16:04 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN31-213.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN31-213.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN31-213.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN31-213.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN31-213.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:16:04 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZSCAN31-214 - 247 3.6e-56 185.2 35.6 1 7 6.6e-05 0.033 14.6 0.4 10 26 75 91 71 91 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZSCAN31-214 - 247 3.6e-56 185.2 35.6 2 7 8.4e-12 4.2e-09 36.4 0.2 4 25 97 118 95 119 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZSCAN31-214 - 247 3.6e-56 185.2 35.6 3 7 1.6e-12 8e-10 38.7 0.5 1 25 122 146 122 147 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZSCAN31-214 - 247 3.6e-56 185.2 35.6 4 7 4.5e-13 2.2e-10 40.5 0.4 1 24 150 173 150 174 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZSCAN31-214 - 247 3.6e-56 185.2 35.6 5 7 8.5e-11 4.2e-08 33.3 0.1 2 24 179 201 179 203 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZSCAN31-214 - 247 3.6e-56 185.2 35.6 6 7 2.6e-11 1.3e-08 34.9 0.5 2 25 207 230 206 231 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZSCAN31-214 - 247 3.6e-56 185.2 35.6 7 7 0.0018 0.92 10.1 0.6 2 14 235 247 235 247 0.95 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZSCAN31-214 - 247 4e-34 115.2 37.4 1 6 7.2e-08 3.6e-05 24.0 1.4 1 23 80 102 80 102 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZSCAN31-214 - 247 4e-34 115.2 37.4 2 6 2.7e-09 1.4e-06 28.5 0.7 1 23 108 130 108 130 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZSCAN31-214 - 247 4e-34 115.2 37.4 3 6 9.8e-09 4.9e-06 26.7 0.4 1 23 136 158 136 158 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZSCAN31-214 - 247 4e-34 115.2 37.4 4 6 1.7e-05 0.0085 16.5 0.9 1 23 164 186 164 186 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZSCAN31-214 - 247 4e-34 115.2 37.4 5 6 1.2e-07 6e-05 23.3 0.1 1 23 192 214 192 214 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZSCAN31-214 - 247 4e-34 115.2 37.4 6 6 2.4e-06 0.0012 19.2 3.0 1 23 220 242 220 242 0.99 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZSCAN31-214 - 247 8e-22 76.1 37.5 1 6 0.00016 0.079 13.8 1.1 1 23 80 102 80 103 0.84 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZSCAN31-214 - 247 8e-22 76.1 37.5 2 6 2.1e-06 0.001 19.7 0.7 1 23 108 130 108 131 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZSCAN31-214 - 247 8e-22 76.1 37.5 3 6 3.1e-06 0.0015 19.2 0.3 1 23 136 158 136 159 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZSCAN31-214 - 247 8e-22 76.1 37.5 4 6 0.00018 0.088 13.7 1.5 1 23 164 186 164 187 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZSCAN31-214 - 247 8e-22 76.1 37.5 5 6 2.8e-05 0.014 16.2 0.2 1 23 192 214 192 215 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZSCAN31-214 - 247 8e-22 76.1 37.5 6 6 1.7e-05 0.0086 16.8 2.5 1 23 220 242 220 243 0.85 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZSCAN31-214 - 247 8.9e-17 60.7 36.6 1 6 2.1e-06 0.001 19.0 0.8 1 24 79 102 79 105 0.90 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZSCAN31-214 - 247 8.9e-17 60.7 36.6 2 6 8.5e-08 4.2e-05 23.4 1.0 2 24 108 130 108 133 0.96 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZSCAN31-214 - 247 8.9e-17 60.7 36.6 3 6 7.5e-05 0.037 14.0 0.5 2 24 136 158 136 161 0.91 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZSCAN31-214 - 247 8.9e-17 60.7 36.6 4 6 0.0015 0.73 9.9 0.9 2 11 164 173 164 173 0.96 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZSCAN31-214 - 247 8.9e-17 60.7 36.6 5 6 0.012 6.1 7.0 0.2 1 11 191 201 191 216 0.80 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZSCAN31-214 - 247 8.9e-17 60.7 36.6 6 6 0.0016 0.79 9.8 2.0 2 21 220 239 220 244 0.79 C2H2-type zinc finger zf-C2H2_11 PF16622.5 29 ZSCAN31-214 - 247 1.7e-10 40.5 30.9 1 6 0.0017 0.86 9.4 0.7 5 26 80 101 77 102 0.89 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZSCAN31-214 - 247 1.7e-10 40.5 30.9 2 6 0.00023 0.12 12.2 0.1 6 25 109 128 106 129 0.93 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZSCAN31-214 - 247 1.7e-10 40.5 30.9 3 6 4.8e-07 0.00024 20.8 0.1 5 26 136 157 133 158 0.95 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZSCAN31-214 - 247 1.7e-10 40.5 30.9 4 6 1.5 7.3e+02 0.1 1.1 7 26 166 185 163 186 0.65 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZSCAN31-214 - 247 1.7e-10 40.5 30.9 5 6 0.002 0.97 9.2 0.3 5 25 192 212 189 214 0.83 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZSCAN31-214 - 247 1.7e-10 40.5 30.9 6 6 0.0069 3.4 7.5 1.3 5 26 220 241 217 242 0.92 zinc-finger C2H2-type zf-C2H2_jaz PF12171.8 27 ZSCAN31-214 - 247 4.9e-08 33.1 21.8 1 6 0.0014 0.71 10.2 0.2 2 22 80 100 79 100 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZSCAN31-214 - 247 4.9e-08 33.1 21.8 2 6 1.6e-05 0.0081 16.4 0.1 2 24 108 130 107 130 0.95 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZSCAN31-214 - 247 4.9e-08 33.1 21.8 3 6 0.035 18 5.8 0.0 4 21 138 155 135 156 0.86 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZSCAN31-214 - 247 4.9e-08 33.1 21.8 4 6 0.078 39 4.7 0.4 2 11 164 173 163 184 0.84 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZSCAN31-214 - 247 4.9e-08 33.1 21.8 5 6 2.4 1.2e+03 -0.0 0.1 4 12 194 202 191 212 0.80 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZSCAN31-214 - 247 4.9e-08 33.1 21.8 6 6 0.0096 4.8 7.6 0.8 4 22 222 240 219 240 0.92 Zinc-finger double-stranded RNA-binding zf_UBZ PF18439.1 32 ZSCAN31-214 - 247 1e-07 31.4 22.1 1 6 0.0089 4.4 7.0 0.4 4 21 81 99 79 99 0.85 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZSCAN31-214 - 247 1e-07 31.4 22.1 2 6 0.00025 0.12 12.0 0.2 3 20 108 126 106 127 0.92 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZSCAN31-214 - 247 1e-07 31.4 22.1 3 6 0.0024 1.2 8.8 0.1 3 15 136 148 134 155 0.83 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZSCAN31-214 - 247 1e-07 31.4 22.1 4 6 0.13 66 3.2 0.3 3 15 164 176 162 183 0.80 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZSCAN31-214 - 247 1e-07 31.4 22.1 5 6 0.019 9.2 6.0 0.1 2 13 191 202 190 210 0.85 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZSCAN31-214 - 247 1e-07 31.4 22.1 6 6 0.013 6.3 6.5 0.2 3 15 220 232 218 239 0.80 Ubiquitin-Binding Zinc Finger Zn-ribbon_8 PF09723.10 40 ZSCAN31-214 - 247 1.1e-07 31.8 28.5 1 6 1.3e-05 0.0064 16.6 4.9 7 38 81 119 79 121 0.91 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZSCAN31-214 - 247 1.1e-07 31.8 28.5 2 6 0.00071 0.36 11.0 0.7 6 22 108 124 106 129 0.85 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZSCAN31-214 - 247 1.1e-07 31.8 28.5 3 6 1.5e-05 0.0077 16.3 1.9 6 34 136 171 135 175 0.90 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZSCAN31-214 - 247 1.1e-07 31.8 28.5 4 6 0.0038 1.9 8.7 5.5 6 34 164 199 163 201 0.90 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZSCAN31-214 - 247 1.1e-07 31.8 28.5 5 6 0.0031 1.6 9.0 4.1 6 34 192 227 190 234 0.75 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZSCAN31-214 - 247 1.1e-07 31.8 28.5 6 6 0.065 33 4.7 0.2 6 18 220 232 219 244 0.79 Zinc ribbon domain XPA_N PF01286.18 32 ZSCAN31-214 - 247 4.6e-07 29.8 22.6 1 6 0.0018 0.91 9.6 0.1 3 14 81 92 79 98 0.87 XPA protein N-terminal XPA_N PF01286.18 32 ZSCAN31-214 - 247 4.6e-07 29.8 22.6 2 6 0.004 2 8.5 0.2 3 12 109 118 107 121 0.89 XPA protein N-terminal XPA_N PF01286.18 32 ZSCAN31-214 - 247 4.6e-07 29.8 22.6 3 6 0.0036 1.8 8.7 0.2 3 14 137 148 135 149 0.89 XPA protein N-terminal XPA_N PF01286.18 32 ZSCAN31-214 - 247 4.6e-07 29.8 22.6 4 6 0.037 18 5.5 0.3 3 14 165 176 163 182 0.85 XPA protein N-terminal XPA_N PF01286.18 32 ZSCAN31-214 - 247 4.6e-07 29.8 22.6 5 6 0.012 6 7.0 0.1 3 12 193 202 191 205 0.88 XPA protein N-terminal XPA_N PF01286.18 32 ZSCAN31-214 - 247 4.6e-07 29.8 22.6 6 6 0.23 1.1e+02 2.9 0.3 3 18 221 236 219 239 0.81 XPA protein N-terminal # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN31-214.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN31-214.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN31-214.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN31-214.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN31-214.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:16:05 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN31-215.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN31-215.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN31-215.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN31-215.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN31-215.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:16:05 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN31-216.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN31-216.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN31-216.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN31-216.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN31-216.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:16:06 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN31-217.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN31-217.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN31-217.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN31-217.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN31-217.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:16:06 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN31-218.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN31-218.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN31-218.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN31-218.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN31-218.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:16:06 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZSCAN31-219 - 247 3.6e-56 185.2 35.6 1 7 6.6e-05 0.033 14.6 0.4 10 26 75 91 71 91 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZSCAN31-219 - 247 3.6e-56 185.2 35.6 2 7 8.4e-12 4.2e-09 36.4 0.2 4 25 97 118 95 119 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZSCAN31-219 - 247 3.6e-56 185.2 35.6 3 7 1.6e-12 8e-10 38.7 0.5 1 25 122 146 122 147 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZSCAN31-219 - 247 3.6e-56 185.2 35.6 4 7 4.5e-13 2.2e-10 40.5 0.4 1 24 150 173 150 174 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZSCAN31-219 - 247 3.6e-56 185.2 35.6 5 7 8.5e-11 4.2e-08 33.3 0.1 2 24 179 201 179 203 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZSCAN31-219 - 247 3.6e-56 185.2 35.6 6 7 2.6e-11 1.3e-08 34.9 0.5 2 25 207 230 206 231 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZSCAN31-219 - 247 3.6e-56 185.2 35.6 7 7 0.0018 0.92 10.1 0.6 2 14 235 247 235 247 0.95 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZSCAN31-219 - 247 4e-34 115.2 37.4 1 6 7.2e-08 3.6e-05 24.0 1.4 1 23 80 102 80 102 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZSCAN31-219 - 247 4e-34 115.2 37.4 2 6 2.7e-09 1.4e-06 28.5 0.7 1 23 108 130 108 130 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZSCAN31-219 - 247 4e-34 115.2 37.4 3 6 9.8e-09 4.9e-06 26.7 0.4 1 23 136 158 136 158 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZSCAN31-219 - 247 4e-34 115.2 37.4 4 6 1.7e-05 0.0085 16.5 0.9 1 23 164 186 164 186 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZSCAN31-219 - 247 4e-34 115.2 37.4 5 6 1.2e-07 6e-05 23.3 0.1 1 23 192 214 192 214 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZSCAN31-219 - 247 4e-34 115.2 37.4 6 6 2.4e-06 0.0012 19.2 3.0 1 23 220 242 220 242 0.99 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZSCAN31-219 - 247 8e-22 76.1 37.5 1 6 0.00016 0.079 13.8 1.1 1 23 80 102 80 103 0.84 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZSCAN31-219 - 247 8e-22 76.1 37.5 2 6 2.1e-06 0.001 19.7 0.7 1 23 108 130 108 131 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZSCAN31-219 - 247 8e-22 76.1 37.5 3 6 3.1e-06 0.0015 19.2 0.3 1 23 136 158 136 159 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZSCAN31-219 - 247 8e-22 76.1 37.5 4 6 0.00018 0.088 13.7 1.5 1 23 164 186 164 187 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZSCAN31-219 - 247 8e-22 76.1 37.5 5 6 2.8e-05 0.014 16.2 0.2 1 23 192 214 192 215 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZSCAN31-219 - 247 8e-22 76.1 37.5 6 6 1.7e-05 0.0086 16.8 2.5 1 23 220 242 220 243 0.85 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZSCAN31-219 - 247 8.9e-17 60.7 36.6 1 6 2.1e-06 0.001 19.0 0.8 1 24 79 102 79 105 0.90 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZSCAN31-219 - 247 8.9e-17 60.7 36.6 2 6 8.5e-08 4.2e-05 23.4 1.0 2 24 108 130 108 133 0.96 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZSCAN31-219 - 247 8.9e-17 60.7 36.6 3 6 7.5e-05 0.037 14.0 0.5 2 24 136 158 136 161 0.91 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZSCAN31-219 - 247 8.9e-17 60.7 36.6 4 6 0.0015 0.73 9.9 0.9 2 11 164 173 164 173 0.96 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZSCAN31-219 - 247 8.9e-17 60.7 36.6 5 6 0.012 6.1 7.0 0.2 1 11 191 201 191 216 0.80 C2H2-type zinc finger zf-C2H2_6 PF13912.6 27 ZSCAN31-219 - 247 8.9e-17 60.7 36.6 6 6 0.0016 0.79 9.8 2.0 2 21 220 239 220 244 0.79 C2H2-type zinc finger zf-C2H2_11 PF16622.5 29 ZSCAN31-219 - 247 1.7e-10 40.5 30.9 1 6 0.0017 0.86 9.4 0.7 5 26 80 101 77 102 0.89 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZSCAN31-219 - 247 1.7e-10 40.5 30.9 2 6 0.00023 0.12 12.2 0.1 6 25 109 128 106 129 0.93 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZSCAN31-219 - 247 1.7e-10 40.5 30.9 3 6 4.8e-07 0.00024 20.8 0.1 5 26 136 157 133 158 0.95 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZSCAN31-219 - 247 1.7e-10 40.5 30.9 4 6 1.5 7.3e+02 0.1 1.1 7 26 166 185 163 186 0.65 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZSCAN31-219 - 247 1.7e-10 40.5 30.9 5 6 0.002 0.97 9.2 0.3 5 25 192 212 189 214 0.83 zinc-finger C2H2-type zf-C2H2_11 PF16622.5 29 ZSCAN31-219 - 247 1.7e-10 40.5 30.9 6 6 0.0069 3.4 7.5 1.3 5 26 220 241 217 242 0.92 zinc-finger C2H2-type zf-C2H2_jaz PF12171.8 27 ZSCAN31-219 - 247 4.9e-08 33.1 21.8 1 6 0.0014 0.71 10.2 0.2 2 22 80 100 79 100 0.92 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZSCAN31-219 - 247 4.9e-08 33.1 21.8 2 6 1.6e-05 0.0081 16.4 0.1 2 24 108 130 107 130 0.95 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZSCAN31-219 - 247 4.9e-08 33.1 21.8 3 6 0.035 18 5.8 0.0 4 21 138 155 135 156 0.86 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZSCAN31-219 - 247 4.9e-08 33.1 21.8 4 6 0.078 39 4.7 0.4 2 11 164 173 163 184 0.84 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZSCAN31-219 - 247 4.9e-08 33.1 21.8 5 6 2.4 1.2e+03 -0.0 0.1 4 12 194 202 191 212 0.80 Zinc-finger double-stranded RNA-binding zf-C2H2_jaz PF12171.8 27 ZSCAN31-219 - 247 4.9e-08 33.1 21.8 6 6 0.0096 4.8 7.6 0.8 4 22 222 240 219 240 0.92 Zinc-finger double-stranded RNA-binding zf_UBZ PF18439.1 32 ZSCAN31-219 - 247 1e-07 31.4 22.1 1 6 0.0089 4.4 7.0 0.4 4 21 81 99 79 99 0.85 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZSCAN31-219 - 247 1e-07 31.4 22.1 2 6 0.00025 0.12 12.0 0.2 3 20 108 126 106 127 0.92 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZSCAN31-219 - 247 1e-07 31.4 22.1 3 6 0.0024 1.2 8.8 0.1 3 15 136 148 134 155 0.83 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZSCAN31-219 - 247 1e-07 31.4 22.1 4 6 0.13 66 3.2 0.3 3 15 164 176 162 183 0.80 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZSCAN31-219 - 247 1e-07 31.4 22.1 5 6 0.019 9.2 6.0 0.1 2 13 191 202 190 210 0.85 Ubiquitin-Binding Zinc Finger zf_UBZ PF18439.1 32 ZSCAN31-219 - 247 1e-07 31.4 22.1 6 6 0.013 6.3 6.5 0.2 3 15 220 232 218 239 0.80 Ubiquitin-Binding Zinc Finger Zn-ribbon_8 PF09723.10 40 ZSCAN31-219 - 247 1.1e-07 31.8 28.5 1 6 1.3e-05 0.0064 16.6 4.9 7 38 81 119 79 121 0.91 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZSCAN31-219 - 247 1.1e-07 31.8 28.5 2 6 0.00071 0.36 11.0 0.7 6 22 108 124 106 129 0.85 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZSCAN31-219 - 247 1.1e-07 31.8 28.5 3 6 1.5e-05 0.0077 16.3 1.9 6 34 136 171 135 175 0.90 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZSCAN31-219 - 247 1.1e-07 31.8 28.5 4 6 0.0038 1.9 8.7 5.5 6 34 164 199 163 201 0.90 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZSCAN31-219 - 247 1.1e-07 31.8 28.5 5 6 0.0031 1.6 9.0 4.1 6 34 192 227 190 234 0.75 Zinc ribbon domain Zn-ribbon_8 PF09723.10 40 ZSCAN31-219 - 247 1.1e-07 31.8 28.5 6 6 0.065 33 4.7 0.2 6 18 220 232 219 244 0.79 Zinc ribbon domain XPA_N PF01286.18 32 ZSCAN31-219 - 247 4.6e-07 29.8 22.6 1 6 0.0018 0.91 9.6 0.1 3 14 81 92 79 98 0.87 XPA protein N-terminal XPA_N PF01286.18 32 ZSCAN31-219 - 247 4.6e-07 29.8 22.6 2 6 0.004 2 8.5 0.2 3 12 109 118 107 121 0.89 XPA protein N-terminal XPA_N PF01286.18 32 ZSCAN31-219 - 247 4.6e-07 29.8 22.6 3 6 0.0036 1.8 8.7 0.2 3 14 137 148 135 149 0.89 XPA protein N-terminal XPA_N PF01286.18 32 ZSCAN31-219 - 247 4.6e-07 29.8 22.6 4 6 0.037 18 5.5 0.3 3 14 165 176 163 182 0.85 XPA protein N-terminal XPA_N PF01286.18 32 ZSCAN31-219 - 247 4.6e-07 29.8 22.6 5 6 0.012 6 7.0 0.1 3 12 193 202 191 205 0.88 XPA protein N-terminal XPA_N PF01286.18 32 ZSCAN31-219 - 247 4.6e-07 29.8 22.6 6 6 0.23 1.1e+02 2.9 0.3 3 18 221 236 219 239 0.81 XPA protein N-terminal # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN31-219.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN31-219.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN31-219.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN31-219.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN31-219.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:16:07 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZSCAN4-201 - 433 6.3e-25 86.4 36.5 1 5 2.8e-06 0.0024 18.2 1.9 5 26 301 323 299 323 0.90 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZSCAN4-201 - 433 6.3e-25 86.4 36.5 2 5 5.5e-08 4.7e-05 23.6 1.5 1 24 326 349 326 351 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZSCAN4-201 - 433 6.3e-25 86.4 36.5 3 5 4.3e-10 3.7e-07 30.3 1.4 1 26 354 379 354 379 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZSCAN4-201 - 433 6.3e-25 86.4 36.5 4 5 2e-11 1.7e-08 34.5 1.4 1 24 382 405 382 407 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZSCAN4-201 - 433 6.3e-25 86.4 36.5 5 5 0.52 4.4e+02 1.6 1.4 4 11 413 420 411 424 0.86 Zinc-finger double domain SCAN PF02023.17 90 ZSCAN4-201 - 433 9.4e-22 76.6 0.0 1 1 2.4e-24 2e-21 75.6 0.0 2 87 41 126 40 129 0.97 SCAN domain zf-C2H2 PF00096.26 23 ZSCAN4-201 - 433 1.1e-18 66.5 36.8 1 4 3.7e-07 0.00031 21.0 4.7 1 23 312 334 312 334 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZSCAN4-201 - 433 1.1e-18 66.5 36.8 2 4 1.5e-06 0.0013 19.1 0.1 1 23 340 362 340 362 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZSCAN4-201 - 433 1.1e-18 66.5 36.8 3 4 1.9e-07 0.00016 21.9 5.1 1 23 368 390 368 390 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZSCAN4-201 - 433 1.1e-18 66.5 36.8 4 4 2e-06 0.0017 18.7 7.1 1 23 396 418 396 418 0.99 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZSCAN4-201 - 433 1.9e-12 46.9 33.3 1 4 2.9e-05 0.024 15.4 4.9 1 23 312 334 312 335 0.97 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZSCAN4-201 - 433 1.9e-12 46.9 33.3 2 4 5.4e-05 0.046 14.6 0.2 1 23 340 362 340 363 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZSCAN4-201 - 433 1.9e-12 46.9 33.3 3 4 5.6e-05 0.048 14.5 3.7 1 23 368 390 368 391 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZSCAN4-201 - 433 1.9e-12 46.9 33.3 4 4 8.2e-06 0.007 17.1 4.1 1 23 396 418 396 419 0.96 C2H2-type zinc finger GAGA PF09237.11 54 ZSCAN4-201 - 433 7.5e-07 28.9 6.2 1 3 0.0013 1.1 9.1 0.6 12 52 327 367 316 367 0.78 GAGA factor GAGA PF09237.11 54 ZSCAN4-201 - 433 7.5e-07 28.9 6.2 2 3 0.031 26 4.7 0.0 23 43 366 386 362 391 0.90 GAGA factor GAGA PF09237.11 54 ZSCAN4-201 - 433 7.5e-07 28.9 6.2 3 3 3.1e-06 0.0027 17.5 0.1 22 44 393 415 390 420 0.91 GAGA factor # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN4-201.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN4-201.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN4-201.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN4-201.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN4-201.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:16:07 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZSCAN4-202 - 433 6.3e-25 86.4 36.5 1 5 2.8e-06 0.0024 18.2 1.9 5 26 301 323 299 323 0.90 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZSCAN4-202 - 433 6.3e-25 86.4 36.5 2 5 5.5e-08 4.7e-05 23.6 1.5 1 24 326 349 326 351 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZSCAN4-202 - 433 6.3e-25 86.4 36.5 3 5 4.3e-10 3.7e-07 30.3 1.4 1 26 354 379 354 379 0.96 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZSCAN4-202 - 433 6.3e-25 86.4 36.5 4 5 2e-11 1.7e-08 34.5 1.4 1 24 382 405 382 407 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZSCAN4-202 - 433 6.3e-25 86.4 36.5 5 5 0.52 4.4e+02 1.6 1.4 4 11 413 420 411 424 0.86 Zinc-finger double domain SCAN PF02023.17 90 ZSCAN4-202 - 433 9.4e-22 76.6 0.0 1 1 2.4e-24 2e-21 75.6 0.0 2 87 41 126 40 129 0.97 SCAN domain zf-C2H2 PF00096.26 23 ZSCAN4-202 - 433 1.1e-18 66.5 36.8 1 4 3.7e-07 0.00031 21.0 4.7 1 23 312 334 312 334 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZSCAN4-202 - 433 1.1e-18 66.5 36.8 2 4 1.5e-06 0.0013 19.1 0.1 1 23 340 362 340 362 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZSCAN4-202 - 433 1.1e-18 66.5 36.8 3 4 1.9e-07 0.00016 21.9 5.1 1 23 368 390 368 390 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZSCAN4-202 - 433 1.1e-18 66.5 36.8 4 4 2e-06 0.0017 18.7 7.1 1 23 396 418 396 418 0.99 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZSCAN4-202 - 433 1.9e-12 46.9 33.3 1 4 2.9e-05 0.024 15.4 4.9 1 23 312 334 312 335 0.97 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZSCAN4-202 - 433 1.9e-12 46.9 33.3 2 4 5.4e-05 0.046 14.6 0.2 1 23 340 362 340 363 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZSCAN4-202 - 433 1.9e-12 46.9 33.3 3 4 5.6e-05 0.048 14.5 3.7 1 23 368 390 368 391 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZSCAN4-202 - 433 1.9e-12 46.9 33.3 4 4 8.2e-06 0.007 17.1 4.1 1 23 396 418 396 419 0.96 C2H2-type zinc finger GAGA PF09237.11 54 ZSCAN4-202 - 433 7.5e-07 28.9 6.2 1 3 0.0013 1.1 9.1 0.6 12 52 327 367 316 367 0.78 GAGA factor GAGA PF09237.11 54 ZSCAN4-202 - 433 7.5e-07 28.9 6.2 2 3 0.031 26 4.7 0.0 23 43 366 386 362 391 0.90 GAGA factor GAGA PF09237.11 54 ZSCAN4-202 - 433 7.5e-07 28.9 6.2 3 3 3.1e-06 0.0027 17.5 0.1 22 44 393 415 390 420 0.91 GAGA factor # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN4-202.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN4-202.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN4-202.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN4-202.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN4-202.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:16:07 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZSCAN5A-201 - 496 1.5e-30 104.2 41.3 1 6 0.0034 4.3 7.9 0.7 14 25 355 366 343 367 0.84 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZSCAN5A-201 - 496 1.5e-30 104.2 41.3 2 6 8.2e-09 1e-05 25.7 0.4 2 24 371 393 370 393 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZSCAN5A-201 - 496 1.5e-30 104.2 41.3 3 6 6.5e-11 8.3e-08 32.3 0.5 1 25 398 422 398 423 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZSCAN5A-201 - 496 1.5e-30 104.2 41.3 4 6 8.8e-09 1.1e-05 25.6 6.8 5 25 430 450 426 451 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZSCAN5A-201 - 496 1.5e-30 104.2 41.3 5 6 8.7e-11 1.1e-07 31.9 1.4 1 25 454 478 454 479 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZSCAN5A-201 - 496 1.5e-30 104.2 41.3 6 6 0.11 1.4e+02 3.1 0.2 2 10 483 491 483 494 0.91 Zinc-finger double domain SCAN PF02023.17 90 ZSCAN5A-201 - 496 1.1e-25 89.3 0.3 1 1 1.7e-28 2.2e-25 88.3 0.3 1 82 40 121 40 127 0.95 SCAN domain zf-C2H2 PF00096.26 23 ZSCAN5A-201 - 496 5.7e-18 64.3 44.3 1 5 0.00029 0.37 11.3 2.5 1 23 356 378 356 378 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZSCAN5A-201 - 496 5.7e-18 64.3 44.3 2 5 2.8e-05 0.036 14.5 1.4 1 23 384 406 384 406 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZSCAN5A-201 - 496 5.7e-18 64.3 44.3 3 5 8.3e-05 0.11 13.1 6.0 1 23 412 434 412 434 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZSCAN5A-201 - 496 5.7e-18 64.3 44.3 4 5 2e-08 2.5e-05 24.5 1.3 1 23 440 462 440 462 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZSCAN5A-201 - 496 5.7e-18 64.3 44.3 5 5 2.4e-08 3.1e-05 24.2 3.0 1 23 468 490 468 490 0.99 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZSCAN5A-201 - 496 4.7e-15 55.0 40.9 1 5 2e-05 0.026 15.4 2.4 1 23 356 378 356 379 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZSCAN5A-201 - 496 4.7e-15 55.0 40.9 2 5 2.6e-05 0.033 15.0 1.1 1 23 384 406 384 407 0.97 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZSCAN5A-201 - 496 4.7e-15 55.0 40.9 3 5 0.00019 0.24 12.3 4.9 1 23 412 434 412 435 0.89 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZSCAN5A-201 - 496 4.7e-15 55.0 40.9 4 5 2.4e-05 0.031 15.1 1.1 1 23 440 462 440 463 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZSCAN5A-201 - 496 4.7e-15 55.0 40.9 5 5 9.1e-07 0.0012 19.5 1.9 1 23 468 490 468 491 0.96 C2H2-type zinc finger zf-met PF12874.7 25 ZSCAN5A-201 - 496 3.8e-07 30.3 30.7 1 5 7.9 1e+04 -2.8 0.1 11 19 28 36 26 36 0.85 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZSCAN5A-201 - 496 3.8e-07 30.3 30.7 2 5 0.001 1.3 9.5 1.7 1 23 356 378 356 379 0.90 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZSCAN5A-201 - 496 3.8e-07 30.3 30.7 3 5 0.017 22 5.6 0.4 1 20 384 403 384 407 0.79 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZSCAN5A-201 - 496 3.8e-07 30.3 30.7 4 5 4.7e-06 0.006 16.9 5.4 1 23 412 434 412 435 0.95 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZSCAN5A-201 - 496 3.8e-07 30.3 30.7 5 5 2.2e-05 0.028 14.8 0.4 1 21 440 460 440 462 0.93 Zinc-finger of C2H2 type # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN5A-201.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN5A-201.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN5A-201.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN5A-201.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN5A-201.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:16:08 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN5A-202.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN5A-202.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN5A-202.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN5A-202.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN5A-202.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:16:08 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN5A-203.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN5A-203.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN5A-203.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN5A-203.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN5A-203.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:16:09 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN5A-204.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN5A-204.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN5A-204.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN5A-204.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN5A-204.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:16:09 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZSCAN5A-205 - 496 1.5e-30 104.2 41.3 1 6 0.0034 4.3 7.9 0.7 14 25 355 366 343 367 0.84 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZSCAN5A-205 - 496 1.5e-30 104.2 41.3 2 6 8.2e-09 1e-05 25.7 0.4 2 24 371 393 370 393 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZSCAN5A-205 - 496 1.5e-30 104.2 41.3 3 6 6.5e-11 8.3e-08 32.3 0.5 1 25 398 422 398 423 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZSCAN5A-205 - 496 1.5e-30 104.2 41.3 4 6 8.8e-09 1.1e-05 25.6 6.8 5 25 430 450 426 451 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZSCAN5A-205 - 496 1.5e-30 104.2 41.3 5 6 8.7e-11 1.1e-07 31.9 1.4 1 25 454 478 454 479 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZSCAN5A-205 - 496 1.5e-30 104.2 41.3 6 6 0.11 1.4e+02 3.1 0.2 2 10 483 491 483 494 0.91 Zinc-finger double domain SCAN PF02023.17 90 ZSCAN5A-205 - 496 1.1e-25 89.3 0.3 1 1 1.7e-28 2.2e-25 88.3 0.3 1 82 40 121 40 127 0.95 SCAN domain zf-C2H2 PF00096.26 23 ZSCAN5A-205 - 496 5.7e-18 64.3 44.3 1 5 0.00029 0.37 11.3 2.5 1 23 356 378 356 378 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZSCAN5A-205 - 496 5.7e-18 64.3 44.3 2 5 2.8e-05 0.036 14.5 1.4 1 23 384 406 384 406 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZSCAN5A-205 - 496 5.7e-18 64.3 44.3 3 5 8.3e-05 0.11 13.1 6.0 1 23 412 434 412 434 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZSCAN5A-205 - 496 5.7e-18 64.3 44.3 4 5 2e-08 2.5e-05 24.5 1.3 1 23 440 462 440 462 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZSCAN5A-205 - 496 5.7e-18 64.3 44.3 5 5 2.4e-08 3.1e-05 24.2 3.0 1 23 468 490 468 490 0.99 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZSCAN5A-205 - 496 4.7e-15 55.0 40.9 1 5 2e-05 0.026 15.4 2.4 1 23 356 378 356 379 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZSCAN5A-205 - 496 4.7e-15 55.0 40.9 2 5 2.6e-05 0.033 15.0 1.1 1 23 384 406 384 407 0.97 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZSCAN5A-205 - 496 4.7e-15 55.0 40.9 3 5 0.00019 0.24 12.3 4.9 1 23 412 434 412 435 0.89 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZSCAN5A-205 - 496 4.7e-15 55.0 40.9 4 5 2.4e-05 0.031 15.1 1.1 1 23 440 462 440 463 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZSCAN5A-205 - 496 4.7e-15 55.0 40.9 5 5 9.1e-07 0.0012 19.5 1.9 1 23 468 490 468 491 0.96 C2H2-type zinc finger zf-met PF12874.7 25 ZSCAN5A-205 - 496 3.8e-07 30.3 30.7 1 5 7.9 1e+04 -2.8 0.1 11 19 28 36 26 36 0.85 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZSCAN5A-205 - 496 3.8e-07 30.3 30.7 2 5 0.001 1.3 9.5 1.7 1 23 356 378 356 379 0.90 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZSCAN5A-205 - 496 3.8e-07 30.3 30.7 3 5 0.017 22 5.6 0.4 1 20 384 403 384 407 0.79 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZSCAN5A-205 - 496 3.8e-07 30.3 30.7 4 5 4.7e-06 0.006 16.9 5.4 1 23 412 434 412 435 0.95 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZSCAN5A-205 - 496 3.8e-07 30.3 30.7 5 5 2.2e-05 0.028 14.8 0.4 1 21 440 460 440 462 0.93 Zinc-finger of C2H2 type # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN5A-205.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN5A-205.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN5A-205.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN5A-205.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN5A-205.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:16:09 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZSCAN5A-206 - 379 3.4e-31 106.3 41.3 1 6 0.0021 3.1 8.4 0.7 14 25 238 249 226 250 0.84 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZSCAN5A-206 - 379 3.4e-31 106.3 41.3 2 6 5e-09 7.5e-06 26.1 0.4 2 24 254 276 253 276 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZSCAN5A-206 - 379 3.4e-31 106.3 41.3 3 6 4e-11 6e-08 32.8 0.5 1 25 281 305 281 306 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZSCAN5A-206 - 379 3.4e-31 106.3 41.3 4 6 5.4e-09 8.1e-06 26.0 6.8 5 25 313 333 309 334 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZSCAN5A-206 - 379 3.4e-31 106.3 41.3 5 6 5.4e-11 8e-08 32.4 1.4 1 25 337 361 337 362 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZSCAN5A-206 - 379 3.4e-31 106.3 41.3 6 6 0.07 1e+02 3.6 0.2 2 10 366 374 366 377 0.91 Zinc-finger double domain zf-C2H2 PF00096.26 23 ZSCAN5A-206 - 379 1.4e-18 66.2 44.3 1 5 0.00018 0.27 11.8 2.5 1 23 239 261 239 261 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZSCAN5A-206 - 379 1.4e-18 66.2 44.3 2 5 1.8e-05 0.026 15.0 1.4 1 23 267 289 267 289 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZSCAN5A-206 - 379 1.4e-18 66.2 44.3 3 5 5.1e-05 0.076 13.5 6.0 1 23 295 317 295 317 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZSCAN5A-206 - 379 1.4e-18 66.2 44.3 4 5 1.2e-08 1.8e-05 24.9 1.3 1 23 323 345 323 345 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZSCAN5A-206 - 379 1.4e-18 66.2 44.3 5 5 1.5e-08 2.2e-05 24.7 3.0 1 23 351 373 351 373 0.99 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZSCAN5A-206 - 379 1.4e-15 56.7 40.9 1 5 1.2e-05 0.018 15.8 2.4 1 23 239 261 239 262 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZSCAN5A-206 - 379 1.4e-15 56.7 40.9 2 5 1.6e-05 0.024 15.5 1.1 1 23 267 289 267 290 0.97 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZSCAN5A-206 - 379 1.4e-15 56.7 40.9 3 5 0.00011 0.17 12.8 4.9 1 23 295 317 295 318 0.89 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZSCAN5A-206 - 379 1.4e-15 56.7 40.9 4 5 1.5e-05 0.022 15.6 1.1 1 23 323 345 323 346 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZSCAN5A-206 - 379 1.4e-15 56.7 40.9 5 5 5.6e-07 0.00083 20.0 1.9 1 23 351 373 351 374 0.96 C2H2-type zinc finger zf-met PF12874.7 25 ZSCAN5A-206 - 379 1.4e-08 34.8 27.2 1 4 0.00063 0.94 10.0 1.7 1 23 239 261 239 262 0.90 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZSCAN5A-206 - 379 1.4e-08 34.8 27.2 2 4 0.011 16 6.1 0.4 1 20 267 286 267 290 0.79 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZSCAN5A-206 - 379 1.4e-08 34.8 27.2 3 4 2.9e-06 0.0043 17.4 5.4 1 23 295 317 295 318 0.95 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZSCAN5A-206 - 379 1.4e-08 34.8 27.2 4 4 1.4e-05 0.021 15.2 0.4 1 21 323 343 323 345 0.93 Zinc-finger of C2H2 type # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN5A-206.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN5A-206.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN5A-206.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN5A-206.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN5A-206.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:16:10 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN5A-207.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN5A-207.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN5A-207.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN5A-207.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN5A-207.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:16:10 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN5A-208.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN5A-208.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN5A-208.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN5A-208.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN5A-208.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:16:10 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN5A-209.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN5A-209.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN5A-209.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN5A-209.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN5A-209.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:16:11 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN5A-210.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN5A-210.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN5A-210.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN5A-210.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN5A-210.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:16:11 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN5A-211.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN5A-211.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN5A-211.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN5A-211.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN5A-211.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:16:11 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN5A-212.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN5A-212.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN5A-212.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN5A-212.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN5A-212.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:16:12 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- SCAN PF02023.17 90 ZSCAN5A-213 - 159 1.7e-26 91.9 0.3 1 1 1.2e-30 2.2e-26 91.5 0.3 1 82 40 121 40 127 0.95 SCAN domain # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN5A-213.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN5A-213.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN5A-213.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN5A-213.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN5A-213.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:16:12 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZSCAN5A-214 - 495 1.5e-30 104.2 41.3 1 6 0.0033 4.3 7.9 0.7 14 25 354 365 342 366 0.84 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZSCAN5A-214 - 495 1.5e-30 104.2 41.3 2 6 8.2e-09 1e-05 25.7 0.4 2 24 370 392 369 392 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZSCAN5A-214 - 495 1.5e-30 104.2 41.3 3 6 6.5e-11 8.3e-08 32.3 0.5 1 25 397 421 397 422 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZSCAN5A-214 - 495 1.5e-30 104.2 41.3 4 6 8.8e-09 1.1e-05 25.6 6.8 5 25 429 449 425 450 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZSCAN5A-214 - 495 1.5e-30 104.2 41.3 5 6 8.7e-11 1.1e-07 31.9 1.4 1 25 453 477 453 478 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZSCAN5A-214 - 495 1.5e-30 104.2 41.3 6 6 0.11 1.4e+02 3.1 0.2 2 10 482 490 482 493 0.91 Zinc-finger double domain SCAN PF02023.17 90 ZSCAN5A-214 - 495 1.1e-25 89.3 0.3 1 1 1.7e-28 2.1e-25 88.3 0.3 1 82 40 121 40 127 0.95 SCAN domain zf-C2H2 PF00096.26 23 ZSCAN5A-214 - 495 5.7e-18 64.3 44.3 1 5 0.00029 0.37 11.3 2.5 1 23 355 377 355 377 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZSCAN5A-214 - 495 5.7e-18 64.3 44.3 2 5 2.8e-05 0.036 14.5 1.4 1 23 383 405 383 405 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZSCAN5A-214 - 495 5.7e-18 64.3 44.3 3 5 8.2e-05 0.11 13.1 6.0 1 23 411 433 411 433 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZSCAN5A-214 - 495 5.7e-18 64.3 44.3 4 5 2e-08 2.5e-05 24.5 1.3 1 23 439 461 439 461 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZSCAN5A-214 - 495 5.7e-18 64.3 44.3 5 5 2.4e-08 3e-05 24.2 3.0 1 23 467 489 467 489 0.99 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZSCAN5A-214 - 495 4.7e-15 55.0 40.9 1 5 2e-05 0.026 15.4 2.4 1 23 355 377 355 378 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZSCAN5A-214 - 495 4.7e-15 55.0 40.9 2 5 2.6e-05 0.033 15.0 1.1 1 23 383 405 383 406 0.97 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZSCAN5A-214 - 495 4.7e-15 55.0 40.9 3 5 0.00019 0.24 12.3 4.9 1 23 411 433 411 434 0.89 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZSCAN5A-214 - 495 4.7e-15 55.0 40.9 4 5 2.4e-05 0.031 15.1 1.1 1 23 439 461 439 462 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZSCAN5A-214 - 495 4.7e-15 55.0 40.9 5 5 9e-07 0.0012 19.5 1.9 1 23 467 489 467 490 0.96 C2H2-type zinc finger zf-met PF12874.7 25 ZSCAN5A-214 - 495 3.8e-07 30.3 30.7 1 5 7.9 1e+04 -2.8 0.1 11 19 28 36 26 36 0.85 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZSCAN5A-214 - 495 3.8e-07 30.3 30.7 2 5 0.001 1.3 9.5 1.7 1 23 355 377 355 378 0.90 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZSCAN5A-214 - 495 3.8e-07 30.3 30.7 3 5 0.017 22 5.6 0.4 1 20 383 402 383 406 0.79 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZSCAN5A-214 - 495 3.8e-07 30.3 30.7 4 5 4.7e-06 0.006 16.9 5.4 1 23 411 433 411 434 0.95 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZSCAN5A-214 - 495 3.8e-07 30.3 30.7 5 5 2.2e-05 0.028 14.8 0.4 1 21 439 459 439 461 0.93 Zinc-finger of C2H2 type # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN5A-214.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN5A-214.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN5A-214.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN5A-214.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN5A-214.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:16:12 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN5A-215.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN5A-215.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN5A-215.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN5A-215.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN5A-215.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:16:13 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN5A-216.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN5A-216.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN5A-216.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN5A-216.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN5A-216.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:16:13 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN5A-217.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN5A-217.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN5A-217.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN5A-217.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN5A-217.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:16:13 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZSCAN5C-201 - 471 3.2e-31 106.3 40.2 1 6 0.00037 0.66 10.5 0.2 14 26 330 342 318 342 0.83 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZSCAN5C-201 - 471 3.2e-31 106.3 40.2 2 6 4.5e-09 8.1e-06 26.0 0.3 2 24 346 368 345 368 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZSCAN5C-201 - 471 3.2e-31 106.3 40.2 3 6 9.9e-11 1.8e-07 31.3 0.3 1 25 373 397 373 398 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZSCAN5C-201 - 471 3.2e-31 106.3 40.2 4 6 5.9e-09 1.1e-05 25.7 6.8 5 25 405 425 401 426 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZSCAN5C-201 - 471 3.2e-31 106.3 40.2 5 6 1.1e-10 2e-07 31.1 2.0 1 25 429 453 429 454 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZSCAN5C-201 - 471 3.2e-31 106.3 40.2 6 6 0.089 1.6e+02 3.0 0.6 2 10 458 466 457 469 0.91 Zinc-finger double domain SCAN PF02023.17 90 ZSCAN5C-201 - 471 4.2e-26 90.6 0.4 1 1 5.1e-29 9.1e-26 89.5 0.4 1 82 15 96 15 102 0.96 SCAN domain zf-C2H2 PF00096.26 23 ZSCAN5C-201 - 471 1.2e-21 75.9 39.8 1 5 1.7e-07 0.0003 21.1 0.5 1 23 331 353 331 353 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZSCAN5C-201 - 471 1.2e-21 75.9 39.8 2 5 2.1e-05 0.037 14.5 1.3 1 23 359 381 359 381 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZSCAN5C-201 - 471 1.2e-21 75.9 39.8 3 5 3.4e-05 0.061 13.8 5.9 1 23 387 409 387 409 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZSCAN5C-201 - 471 1.2e-21 75.9 39.8 4 5 3.2e-09 5.6e-06 26.5 1.2 1 23 415 437 415 437 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZSCAN5C-201 - 471 1.2e-21 75.9 39.8 5 5 1.2e-07 0.00021 21.5 2.6 1 23 443 465 443 465 0.98 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZSCAN5C-201 - 471 1.7e-15 56.4 37.0 1 5 7.4e-06 0.013 16.2 0.6 1 23 331 353 331 354 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZSCAN5C-201 - 471 1.7e-15 56.4 37.0 2 5 1.3e-05 0.024 15.4 0.9 1 23 359 381 359 382 0.97 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZSCAN5C-201 - 471 1.7e-15 56.4 37.0 3 5 5.5e-05 0.099 13.5 4.6 1 23 387 409 387 410 0.89 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZSCAN5C-201 - 471 1.7e-15 56.4 37.0 4 5 1.4e-05 0.025 15.4 1.1 1 23 415 437 415 438 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZSCAN5C-201 - 471 1.7e-15 56.4 37.0 5 5 5.7e-06 0.01 16.6 2.0 1 23 443 465 443 466 0.96 C2H2-type zinc finger zf-met PF12874.7 25 ZSCAN5C-201 - 471 5.3e-08 33.0 26.8 1 5 0.00039 0.69 10.4 0.2 1 23 331 353 331 354 0.91 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZSCAN5C-201 - 471 5.3e-08 33.0 26.8 2 5 0.011 20 5.8 0.2 1 19 359 377 359 382 0.78 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZSCAN5C-201 - 471 5.3e-08 33.0 26.8 3 5 2.9e-06 0.0051 17.1 5.2 1 23 387 409 387 410 0.95 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZSCAN5C-201 - 471 5.3e-08 33.0 26.8 4 5 2.9e-05 0.053 13.9 0.8 1 21 415 435 415 437 0.93 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZSCAN5C-201 - 471 5.3e-08 33.0 26.8 5 5 4.5 8.1e+03 -2.5 0.1 8 22 450 464 445 466 0.72 Zinc-finger of C2H2 type # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN5C-201.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN5C-201.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN5C-201.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN5C-201.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN5C-201.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:16:14 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-H2C2_2 PF13465.6 26 ZSCAN5C-202 - 496 4.7e-31 105.8 40.2 1 6 0.00039 0.7 10.4 0.2 14 26 355 367 343 367 0.83 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZSCAN5C-202 - 496 4.7e-31 105.8 40.2 2 6 4.8e-09 8.6e-06 26.0 0.3 2 24 371 393 370 393 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZSCAN5C-202 - 496 4.7e-31 105.8 40.2 3 6 1e-10 1.9e-07 31.2 0.3 1 25 398 422 398 423 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZSCAN5C-202 - 496 4.7e-31 105.8 40.2 4 6 6.3e-09 1.1e-05 25.6 6.8 5 25 430 450 426 451 0.92 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZSCAN5C-202 - 496 4.7e-31 105.8 40.2 5 6 1.2e-10 2.1e-07 31.0 2.0 1 25 454 478 454 479 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZSCAN5C-202 - 496 4.7e-31 105.8 40.2 6 6 0.094 1.7e+02 2.9 0.6 2 10 483 491 482 494 0.91 Zinc-finger double domain SCAN PF02023.17 90 ZSCAN5C-202 - 496 4.6e-26 90.5 0.4 1 1 5.5e-29 9.8e-26 89.4 0.4 1 82 40 121 40 127 0.96 SCAN domain zf-C2H2 PF00096.26 23 ZSCAN5C-202 - 496 1.6e-21 75.5 39.8 1 5 1.8e-07 0.00032 21.0 0.5 1 23 356 378 356 378 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZSCAN5C-202 - 496 1.6e-21 75.5 39.8 2 5 2.2e-05 0.04 14.4 1.3 1 23 384 406 384 406 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZSCAN5C-202 - 496 1.6e-21 75.5 39.8 3 5 3.6e-05 0.065 13.7 5.9 1 23 412 434 412 434 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZSCAN5C-202 - 496 1.6e-21 75.5 39.8 4 5 3.4e-09 6e-06 26.4 1.2 1 23 440 462 440 462 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZSCAN5C-202 - 496 1.6e-21 75.5 39.8 5 5 1.3e-07 0.00023 21.5 2.6 1 23 468 490 468 490 0.98 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZSCAN5C-202 - 496 2.2e-15 56.0 37.0 1 5 7.9e-06 0.014 16.2 0.6 1 23 356 378 356 379 0.96 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZSCAN5C-202 - 496 2.2e-15 56.0 37.0 2 5 1.4e-05 0.026 15.4 0.9 1 23 384 406 384 407 0.97 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZSCAN5C-202 - 496 2.2e-15 56.0 37.0 3 5 5.9e-05 0.11 13.4 4.6 1 23 412 434 412 435 0.89 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZSCAN5C-202 - 496 2.2e-15 56.0 37.0 4 5 1.5e-05 0.027 15.3 1.1 1 23 440 462 440 463 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZSCAN5C-202 - 496 2.2e-15 56.0 37.0 5 5 6.1e-06 0.011 16.5 2.0 1 23 468 490 468 491 0.96 C2H2-type zinc finger zf-met PF12874.7 25 ZSCAN5C-202 - 496 6.1e-08 32.8 26.8 1 5 0.00041 0.74 10.3 0.2 1 23 356 378 356 379 0.91 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZSCAN5C-202 - 496 6.1e-08 32.8 26.8 2 5 0.012 21 5.7 0.2 1 19 384 402 384 407 0.78 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZSCAN5C-202 - 496 6.1e-08 32.8 26.8 3 5 3.1e-06 0.0055 17.1 5.2 1 23 412 434 412 435 0.95 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZSCAN5C-202 - 496 6.1e-08 32.8 26.8 4 5 3.1e-05 0.056 13.9 0.8 1 21 440 460 440 462 0.93 Zinc-finger of C2H2 type zf-met PF12874.7 25 ZSCAN5C-202 - 496 6.1e-08 32.8 26.8 5 5 4.8 8.6e+03 -2.6 0.1 8 22 475 489 470 491 0.72 Zinc-finger of C2H2 type # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN5C-202.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN5C-202.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN5C-202.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN5C-202.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZSCAN5C-202.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:16:14 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-C2H2 PF00096.26 23 ZXDB-201 - 803 3.3e-33 112.3 65.9 1 10 2.1e-06 0.0046 17.3 0.6 1 23 271 295 271 295 0.95 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZXDB-201 - 803 3.3e-33 112.3 65.9 2 10 1.3e-08 3e-05 24.2 0.6 1 23 304 328 304 328 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZXDB-201 - 803 3.3e-33 112.3 65.9 3 10 3.8e-08 8.4e-05 22.8 0.1 3 23 336 358 334 358 0.95 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZXDB-201 - 803 3.3e-33 112.3 65.9 4 10 7.3e-08 0.00016 21.9 0.3 1 23 364 386 364 386 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZXDB-201 - 803 3.3e-33 112.3 65.9 5 10 4.9e-05 0.11 13.0 0.5 1 23 393 417 393 417 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZXDB-201 - 803 3.3e-33 112.3 65.9 6 10 0.0058 13 6.5 2.5 1 23 424 448 424 448 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZXDB-201 - 803 3.3e-33 112.3 65.9 7 10 2.2e-05 0.049 14.1 0.9 3 23 456 478 454 478 0.93 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZXDB-201 - 803 3.3e-33 112.3 65.9 8 10 4.2e-07 0.00094 19.5 0.4 1 23 484 508 484 508 0.95 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZXDB-201 - 803 3.3e-33 112.3 65.9 9 10 0.011 25 5.6 0.9 1 23 514 538 514 538 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZXDB-201 - 803 3.3e-33 112.3 65.9 10 10 0.0009 2 9.0 3.7 2 23 548 572 547 572 0.94 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZXDB-201 - 803 1.5e-25 87.6 66.9 1 10 2e-05 0.045 14.6 0.8 1 23 271 295 271 296 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZXDB-201 - 803 1.5e-25 87.6 66.9 2 10 4.1e-07 0.00091 19.9 0.4 1 23 304 328 304 329 0.97 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZXDB-201 - 803 1.5e-25 87.6 66.9 3 10 8.7e-06 0.019 15.7 0.1 3 23 336 358 334 359 0.89 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZXDB-201 - 803 1.5e-25 87.6 66.9 4 10 9.2e-07 0.0021 18.8 0.8 1 23 364 386 364 387 0.97 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZXDB-201 - 803 1.5e-25 87.6 66.9 5 10 0.019 44 5.3 0.7 1 19 393 413 393 418 0.86 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZXDB-201 - 803 1.5e-25 87.6 66.9 6 10 0.0063 14 6.8 2.3 1 23 424 448 424 449 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZXDB-201 - 803 1.5e-25 87.6 66.9 7 10 2.4e-05 0.054 14.4 0.6 1 23 454 478 454 479 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZXDB-201 - 803 1.5e-25 87.6 66.9 8 10 5.2e-05 0.12 13.3 0.3 1 23 484 508 484 509 0.94 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZXDB-201 - 803 1.5e-25 87.6 66.9 9 10 0.00083 1.9 9.6 1.2 1 23 514 538 514 539 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZXDB-201 - 803 1.5e-25 87.6 66.9 10 10 0.00012 0.28 12.1 3.0 2 24 548 572 547 572 0.94 C2H2-type zinc finger zf-H2C2_2 PF13465.6 26 ZXDB-201 - 803 1.3e-18 66.5 58.1 1 11 0.46 1e+03 0.4 0.0 15 25 271 283 264 284 0.85 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZXDB-201 - 803 1.3e-18 66.5 58.1 2 11 0.00059 1.3 9.5 0.1 2 21 288 312 287 317 0.80 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZXDB-201 - 803 1.3e-18 66.5 58.1 3 11 1.9e-05 0.042 14.3 0.5 2 26 321 347 320 347 0.93 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZXDB-201 - 803 1.3e-18 66.5 58.1 4 11 1.1e-07 0.00024 21.4 0.4 1 24 350 373 350 375 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZXDB-201 - 803 1.3e-18 66.5 58.1 5 11 1.3e-05 0.03 14.8 0.9 2 25 379 405 378 406 0.88 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZXDB-201 - 803 1.3e-18 66.5 58.1 6 11 1.7 3.8e+03 -1.4 0.4 3 24 411 435 409 437 0.69 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZXDB-201 - 803 1.3e-18 66.5 58.1 7 11 3.2e-06 0.0071 16.7 0.1 2 19 441 458 440 467 0.85 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZXDB-201 - 803 1.3e-18 66.5 58.1 8 11 1.7e-05 0.038 14.4 0.8 2 26 471 497 470 497 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZXDB-201 - 803 1.3e-18 66.5 58.1 9 11 0.00013 0.3 11.6 0.7 1 24 500 525 500 527 0.82 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZXDB-201 - 803 1.3e-18 66.5 58.1 10 11 0.17 3.7e+02 1.8 0.5 5 26 534 560 530 560 0.70 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZXDB-201 - 803 1.3e-18 66.5 58.1 11 11 2.2 4.9e+03 -1.7 0.7 4 13 561 571 560 574 0.70 Zinc-finger double domain zf-C2H2_8 PF15909.5 98 ZXDB-201 - 803 1.2e-10 41.6 31.7 1 5 0.0014 3.2 8.1 0.4 37 87 272 326 243 333 0.61 C2H2-type zinc ribbon zf-C2H2_8 PF15909.5 98 ZXDB-201 - 803 1.2e-10 41.6 31.7 2 5 8.8e-06 0.02 15.2 1.3 25 72 325 369 310 370 0.77 C2H2-type zinc ribbon zf-C2H2_8 PF15909.5 98 ZXDB-201 - 803 1.2e-10 41.6 31.7 3 5 1.4e-06 0.0032 17.7 2.0 42 86 368 414 366 422 0.89 C2H2-type zinc ribbon zf-C2H2_8 PF15909.5 98 ZXDB-201 - 803 1.2e-10 41.6 31.7 4 5 4.6e-05 0.1 12.9 1.6 2 74 426 493 425 505 0.68 C2H2-type zinc ribbon zf-C2H2_8 PF15909.5 98 ZXDB-201 - 803 1.2e-10 41.6 31.7 5 5 0.0075 17 5.8 2.5 2 59 516 570 515 578 0.82 C2H2-type zinc ribbon zf-C2H2_aberr PF17017.5 176 ZXDB-201 - 803 7.9e-07 29.4 29.3 1 8 0.0064 14 5.7 0.2 1 22 304 325 271 328 0.46 Aberrant zinc-finger zf-C2H2_aberr PF17017.5 176 ZXDB-201 - 803 7.9e-07 29.4 29.3 2 8 0.00012 0.27 11.4 0.4 1 62 304 356 304 365 0.73 Aberrant zinc-finger zf-C2H2_aberr PF17017.5 176 ZXDB-201 - 803 7.9e-07 29.4 29.3 3 8 0.21 4.7e+02 0.8 0.1 142 162 394 414 385 420 0.79 Aberrant zinc-finger zf-C2H2_aberr PF17017.5 176 ZXDB-201 - 803 7.9e-07 29.4 29.3 4 8 0.00025 0.55 10.3 0.4 136 163 419 446 412 451 0.85 Aberrant zinc-finger zf-C2H2_aberr PF17017.5 176 ZXDB-201 - 803 7.9e-07 29.4 29.3 5 8 0.16 3.6e+02 1.2 0.1 141 161 454 474 450 481 0.80 Aberrant zinc-finger zf-C2H2_aberr PF17017.5 176 ZXDB-201 - 803 7.9e-07 29.4 29.3 6 8 0.00061 1.4 9.1 0.1 134 163 479 506 471 511 0.78 Aberrant zinc-finger zf-C2H2_aberr PF17017.5 176 ZXDB-201 - 803 7.9e-07 29.4 29.3 7 8 0.075 1.7e+02 2.3 0.3 141 165 514 538 506 544 0.73 Aberrant zinc-finger zf-C2H2_aberr PF17017.5 176 ZXDB-201 - 803 7.9e-07 29.4 29.3 8 8 0.00067 1.5 8.9 2.1 3 76 516 585 514 640 0.68 Aberrant zinc-finger # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZXDB-201.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZXDB-201.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZXDB-201.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZXDB-201.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZXDB-201.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:16:14 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-C2H2 PF00096.26 23 ZXDC-201 - 710 1e-31 107.6 69.2 1 11 2.9e-05 0.053 14.0 0.5 1 23 175 199 175 199 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZXDC-201 - 710 1e-31 107.6 69.2 2 11 2.6e-08 4.7e-05 23.6 0.4 1 23 208 232 208 232 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZXDC-201 - 710 1e-31 107.6 69.2 3 11 1.3e-07 0.00023 21.4 0.1 3 23 240 262 238 262 0.95 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZXDC-201 - 710 1e-31 107.6 69.2 4 11 9.6e-06 0.017 15.5 1.6 1 23 268 290 268 290 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZXDC-201 - 710 1e-31 107.6 69.2 5 11 2.6e-05 0.047 14.2 0.3 1 23 297 321 297 321 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZXDC-201 - 710 1e-31 107.6 69.2 6 11 0.0062 11 6.7 2.5 1 23 328 352 328 352 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZXDC-201 - 710 1e-31 107.6 69.2 7 11 7.1e-06 0.013 16.0 1.1 1 23 358 382 358 382 0.94 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZXDC-201 - 710 1e-31 107.6 69.2 8 11 1.5e-07 0.00027 21.2 0.4 1 23 388 412 388 412 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZXDC-201 - 710 1e-31 107.6 69.2 9 11 0.018 32 5.2 1.0 1 23 418 442 418 442 0.95 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZXDC-201 - 710 1e-31 107.6 69.2 10 11 0.00017 0.31 11.6 2.7 2 23 452 476 451 476 0.95 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZXDC-201 - 710 1e-31 107.6 69.2 11 11 0.33 6e+02 1.2 0.0 11 21 628 638 625 639 0.85 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZXDC-201 - 710 4.3e-24 83.1 67.0 1 10 0.0016 2.8 9.0 0.4 1 23 175 199 175 200 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZXDC-201 - 710 4.3e-24 83.1 67.0 2 10 1.6e-06 0.0029 18.3 0.4 1 23 208 232 208 233 0.97 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZXDC-201 - 710 4.3e-24 83.1 67.0 3 10 6.4e-06 0.012 16.4 0.1 2 23 239 262 238 263 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZXDC-201 - 710 4.3e-24 83.1 67.0 4 10 1.6e-05 0.028 15.2 2.4 1 23 268 290 268 291 0.97 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZXDC-201 - 710 4.3e-24 83.1 67.0 5 10 0.0037 6.6 7.9 0.5 1 19 297 317 297 322 0.89 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZXDC-201 - 710 4.3e-24 83.1 67.0 6 10 0.0068 12 7.0 2.3 1 23 328 352 328 353 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZXDC-201 - 710 4.3e-24 83.1 67.0 7 10 1.6e-05 0.028 15.2 0.6 1 23 358 382 358 383 0.91 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZXDC-201 - 710 4.3e-24 83.1 67.0 8 10 4e-05 0.072 14.0 0.4 1 23 388 412 388 413 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZXDC-201 - 710 4.3e-24 83.1 67.0 9 10 0.00071 1.3 10.1 1.2 1 23 418 442 418 443 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZXDC-201 - 710 4.3e-24 83.1 67.0 10 10 0.00012 0.22 12.4 2.3 2 24 452 476 451 476 0.95 C2H2-type zinc finger zf-H2C2_2 PF13465.6 26 ZXDC-201 - 710 2.7e-19 68.6 56.0 1 10 0.41 7.3e+02 0.9 0.7 13 25 172 187 168 188 0.80 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZXDC-201 - 710 2.7e-19 68.6 56.0 2 10 0.0068 12 6.5 0.2 2 21 192 216 188 221 0.69 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZXDC-201 - 710 2.7e-19 68.6 56.0 3 10 2.1e-05 0.037 14.5 0.7 2 26 225 251 224 251 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZXDC-201 - 710 2.7e-19 68.6 56.0 4 10 1.3e-07 0.00024 21.4 0.3 1 24 254 277 254 279 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZXDC-201 - 710 2.7e-19 68.6 56.0 5 10 7.4e-06 0.013 15.9 1.3 2 25 283 309 282 310 0.88 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZXDC-201 - 710 2.7e-19 68.6 56.0 6 10 1.8 3.3e+03 -1.2 0.4 3 24 315 339 313 341 0.69 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZXDC-201 - 710 2.7e-19 68.6 56.0 7 10 1.4e-05 0.025 15.0 0.1 2 25 345 370 344 371 0.84 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZXDC-201 - 710 2.7e-19 68.6 56.0 8 10 1.9e-06 0.0034 17.8 0.8 2 26 375 401 374 401 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZXDC-201 - 710 2.7e-19 68.6 56.0 9 10 3.3e-05 0.059 13.8 1.2 1 24 404 429 404 431 0.83 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZXDC-201 - 710 2.7e-19 68.6 56.0 10 10 2.1 3.8e+03 -1.4 0.1 16 25 452 463 434 464 0.51 Zinc-finger double domain zf-C2H2_8 PF15909.5 98 ZXDC-201 - 710 8e-13 48.5 27.8 1 6 0.0046 8.2 6.8 0.2 36 87 175 230 160 234 0.64 C2H2-type zinc ribbon zf-C2H2_8 PF15909.5 98 ZXDC-201 - 710 8e-13 48.5 27.8 2 6 2.9e-08 5.3e-05 23.4 2.9 2 86 210 287 209 295 0.83 C2H2-type zinc ribbon zf-C2H2_8 PF15909.5 98 ZXDC-201 - 710 8e-13 48.5 27.8 3 6 0.00078 1.4 9.3 0.8 35 70 296 331 288 335 0.91 C2H2-type zinc ribbon zf-C2H2_8 PF15909.5 98 ZXDC-201 - 710 8e-13 48.5 27.8 4 6 2.1e-06 0.0037 17.5 1.0 2 69 330 390 329 391 0.69 C2H2-type zinc ribbon zf-C2H2_8 PF15909.5 98 ZXDC-201 - 710 8e-13 48.5 27.8 5 6 7.9e-05 0.14 12.5 1.6 34 87 386 440 383 456 0.80 C2H2-type zinc ribbon zf-C2H2_8 PF15909.5 98 ZXDC-201 - 710 8e-13 48.5 27.8 6 6 0.045 81 3.6 1.4 2 57 420 472 419 479 0.78 C2H2-type zinc ribbon zf-C2H2_aberr PF17017.5 176 ZXDC-201 - 710 1.2e-07 32.1 26.4 1 6 0.0027 4.9 7.3 0.3 1 56 175 228 175 232 0.48 Aberrant zinc-finger zf-C2H2_aberr PF17017.5 176 ZXDC-201 - 710 1.2e-07 32.1 26.4 2 6 0.0013 2.4 8.3 1.5 135 164 232 261 223 270 0.79 Aberrant zinc-finger zf-C2H2_aberr PF17017.5 176 ZXDC-201 - 710 1.2e-07 32.1 26.4 3 6 0.092 1.6e+02 2.3 0.1 142 162 298 318 287 323 0.82 Aberrant zinc-finger zf-C2H2_aberr PF17017.5 176 ZXDC-201 - 710 1.2e-07 32.1 26.4 4 6 0.00028 0.51 10.5 0.4 136 163 323 350 317 356 0.85 Aberrant zinc-finger zf-C2H2_aberr PF17017.5 176 ZXDC-201 - 710 1.2e-07 32.1 26.4 5 6 0.00099 1.8 8.7 0.1 134 163 383 410 376 416 0.78 Aberrant zinc-finger zf-C2H2_aberr PF17017.5 176 ZXDC-201 - 710 1.2e-07 32.1 26.4 6 6 0.014 25 5.0 2.2 12 67 429 480 418 490 0.52 Aberrant zinc-finger # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZXDC-201.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZXDC-201.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZXDC-201.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZXDC-201.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZXDC-201.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:16:15 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-C2H2 PF00096.26 23 ZXDC-202 - 858 1.1e-30 104.4 69.2 1 11 2.9e-05 0.066 13.7 0.5 1 23 175 199 175 199 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZXDC-202 - 858 1.1e-30 104.4 69.2 2 11 2.6e-08 5.9e-05 23.3 0.4 1 23 208 232 208 232 0.98 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZXDC-202 - 858 1.1e-30 104.4 69.2 3 11 1.3e-07 0.00029 21.1 0.1 3 23 240 262 238 262 0.95 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZXDC-202 - 858 1.1e-30 104.4 69.2 4 11 9.5e-06 0.021 15.2 1.6 1 23 268 290 268 290 0.99 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZXDC-202 - 858 1.1e-30 104.4 69.2 5 11 2.6e-05 0.058 13.9 0.3 1 23 297 321 297 321 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZXDC-202 - 858 1.1e-30 104.4 69.2 6 11 0.0062 14 6.4 2.5 1 23 328 352 328 352 0.96 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZXDC-202 - 858 1.1e-30 104.4 69.2 7 11 7.1e-06 0.016 15.7 1.1 1 23 358 382 358 382 0.94 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZXDC-202 - 858 1.1e-30 104.4 69.2 8 11 1.5e-07 0.00033 20.9 0.4 1 23 388 412 388 412 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZXDC-202 - 858 1.1e-30 104.4 69.2 9 11 0.018 40 4.9 1.0 1 23 418 442 418 442 0.95 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZXDC-202 - 858 1.1e-30 104.4 69.2 10 11 0.00017 0.38 11.3 2.7 2 23 452 476 451 476 0.95 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZXDC-202 - 858 1.1e-30 104.4 69.2 11 11 0.33 7.3e+02 1.0 0.0 11 21 628 638 625 639 0.85 Zinc finger, C2H2 type zf-C2H2_4 PF13894.6 24 ZXDC-202 - 858 3.8e-23 80.2 67.0 1 10 0.0016 3.5 8.7 0.4 1 23 175 199 175 200 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZXDC-202 - 858 3.8e-23 80.2 67.0 2 10 1.6e-06 0.0037 18.0 0.4 1 23 208 232 208 233 0.97 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZXDC-202 - 858 3.8e-23 80.2 67.0 3 10 6.4e-06 0.014 16.1 0.1 2 23 239 262 238 263 0.93 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZXDC-202 - 858 3.8e-23 80.2 67.0 4 10 1.6e-05 0.035 14.9 2.4 1 23 268 290 268 291 0.97 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZXDC-202 - 858 3.8e-23 80.2 67.0 5 10 0.0037 8.2 7.6 0.5 1 19 297 317 297 322 0.89 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZXDC-202 - 858 3.8e-23 80.2 67.0 6 10 0.0068 15 6.7 2.3 1 23 328 352 328 353 0.92 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZXDC-202 - 858 3.8e-23 80.2 67.0 7 10 1.6e-05 0.035 14.9 0.6 1 23 358 382 358 383 0.91 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZXDC-202 - 858 3.8e-23 80.2 67.0 8 10 4e-05 0.09 13.7 0.4 1 23 388 412 388 413 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZXDC-202 - 858 3.8e-23 80.2 67.0 9 10 0.00071 1.6 9.8 1.2 1 23 418 442 418 443 0.95 C2H2-type zinc finger zf-C2H2_4 PF13894.6 24 ZXDC-202 - 858 3.8e-23 80.2 67.0 10 10 0.00012 0.28 12.1 2.3 2 24 452 476 451 476 0.95 C2H2-type zinc finger zf-H2C2_2 PF13465.6 26 ZXDC-202 - 858 1.5e-18 66.3 55.6 1 10 0.38 8.5e+02 0.7 0.6 13 25 172 187 168 188 0.80 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZXDC-202 - 858 1.5e-18 66.3 55.6 2 10 0.0067 15 6.2 0.2 2 21 192 216 188 221 0.69 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZXDC-202 - 858 1.5e-18 66.3 55.6 3 10 2.1e-05 0.047 14.2 0.7 2 26 225 251 224 251 0.94 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZXDC-202 - 858 1.5e-18 66.3 55.6 4 10 1.3e-07 0.0003 21.1 0.3 1 24 254 277 254 279 0.95 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZXDC-202 - 858 1.5e-18 66.3 55.6 5 10 7.4e-06 0.017 15.6 1.3 2 25 283 309 282 310 0.88 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZXDC-202 - 858 1.5e-18 66.3 55.6 6 10 1.8 4.1e+03 -1.5 0.4 3 24 315 339 313 341 0.69 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZXDC-202 - 858 1.5e-18 66.3 55.6 7 10 1.4e-05 0.031 14.7 0.1 2 25 345 370 344 371 0.84 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZXDC-202 - 858 1.5e-18 66.3 55.6 8 10 1.9e-06 0.0042 17.5 0.8 2 26 375 401 374 401 0.91 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZXDC-202 - 858 1.5e-18 66.3 55.6 9 10 3.3e-05 0.074 13.5 1.2 1 24 404 429 404 431 0.83 Zinc-finger double domain zf-H2C2_2 PF13465.6 26 ZXDC-202 - 858 1.5e-18 66.3 55.6 10 10 2.1 4.7e+03 -1.7 0.1 16 25 452 463 434 464 0.51 Zinc-finger double domain zf-C2H2_8 PF15909.5 98 ZXDC-202 - 858 1.7e-12 47.5 27.1 1 7 0.0048 11 6.4 0.2 36 87 175 230 162 234 0.63 C2H2-type zinc ribbon zf-C2H2_8 PF15909.5 98 ZXDC-202 - 858 1.7e-12 47.5 27.1 2 7 3.9e-08 8.7e-05 22.7 3.2 2 85 210 286 209 292 0.83 C2H2-type zinc ribbon zf-C2H2_8 PF15909.5 98 ZXDC-202 - 858 1.7e-12 47.5 27.1 3 7 1.2e-07 0.00027 21.2 4.4 6 86 244 318 240 326 0.77 C2H2-type zinc ribbon zf-C2H2_8 PF15909.5 98 ZXDC-202 - 858 1.7e-12 47.5 27.1 4 7 0.00066 1.5 9.2 2.3 34 70 295 331 281 348 0.74 C2H2-type zinc ribbon zf-C2H2_8 PF15909.5 98 ZXDC-202 - 858 1.7e-12 47.5 27.1 5 7 1.5e-06 0.0034 17.7 2.1 2 72 330 395 329 408 0.68 C2H2-type zinc ribbon zf-C2H2_8 PF15909.5 98 ZXDC-202 - 858 1.7e-12 47.5 27.1 6 7 7.1e-05 0.16 12.3 1.3 34 87 386 440 383 454 0.81 C2H2-type zinc ribbon zf-C2H2_8 PF15909.5 98 ZXDC-202 - 858 1.7e-12 47.5 27.1 7 7 0.052 1.2e+02 3.1 1.0 2 57 420 472 420 478 0.77 C2H2-type zinc ribbon zf-C2H2_aberr PF17017.5 176 ZXDC-202 - 858 3.5e-07 30.5 25.7 1 7 0.0027 6.1 6.9 0.3 1 56 175 228 175 232 0.48 Aberrant zinc-finger zf-C2H2_aberr PF17017.5 176 ZXDC-202 - 858 3.5e-07 30.5 25.7 2 7 0.0012 2.7 8.1 0.4 141 164 238 261 231 270 0.83 Aberrant zinc-finger zf-C2H2_aberr PF17017.5 176 ZXDC-202 - 858 3.5e-07 30.5 25.7 3 7 0.099 2.2e+02 1.9 0.1 142 161 298 317 287 322 0.82 Aberrant zinc-finger zf-C2H2_aberr PF17017.5 176 ZXDC-202 - 858 3.5e-07 30.5 25.7 4 7 0.00027 0.61 10.2 0.5 136 164 323 351 317 362 0.86 Aberrant zinc-finger zf-C2H2_aberr PF17017.5 176 ZXDC-202 - 858 3.5e-07 30.5 25.7 5 7 0.00085 1.9 8.6 0.1 134 163 383 410 369 416 0.79 Aberrant zinc-finger zf-C2H2_aberr PF17017.5 176 ZXDC-202 - 858 3.5e-07 30.5 25.7 6 7 0.12 2.6e+02 1.6 0.2 141 164 418 441 409 447 0.62 Aberrant zinc-finger zf-C2H2_aberr PF17017.5 176 ZXDC-202 - 858 3.5e-07 30.5 25.7 7 7 0.013 28 4.8 2.1 13 67 430 480 418 490 0.52 Aberrant zinc-finger # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZXDC-202.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZXDC-202.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZXDC-202.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZXDC-202.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZXDC-202.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:16:15 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZXDC-203.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZXDC-203.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZXDC-203.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZXDC-203.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZXDC-203.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:16:16 2023 # [ok] # --- full sequence --- -------------- this domain ------------- hmm coord ali coord env coord # target name accession tlen query name accession qlen E-value score bias # of c-Evalue i-Evalue score bias from to from to from to acc description of target #------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- --------------------- zf-C2H2 PF00096.26 23 ZXDC-204 - 339 3.5e-07 30.3 27.3 1 5 0.56 9.1e+02 0.7 1.9 14 23 2 11 1 11 0.90 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZXDC-204 - 339 3.5e-07 30.3 27.3 2 5 6.6e-08 0.00011 22.5 0.4 1 23 17 41 17 41 0.97 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZXDC-204 - 339 3.5e-07 30.3 27.3 3 5 0.0081 13 6.4 1.0 1 23 47 71 47 71 0.95 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZXDC-204 - 339 3.5e-07 30.3 27.3 4 5 7.7e-05 0.13 12.8 2.7 2 23 81 105 80 105 0.95 Zinc finger, C2H2 type zf-C2H2 PF00096.26 23 ZXDC-204 - 339 3.5e-07 30.3 27.3 5 5 0.14 2.3e+02 2.5 0.0 11 21 257 267 253 268 0.84 Zinc finger, C2H2 type # # Program: hmmscan # Version: 3.2.1 (June 2018) # Pipeline mode: SCAN # Query file: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZXDC-204.fa # Target file: /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm # Option settings: /oak/stanford/groups/akundaje/marinovg/programs/hmmer-3.2.1/bin/hmmscan -o /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZXDC-204.Pfam32 --tblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZXDC-204.Pfam32.tblout --domtblout /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZXDC-204.Pfam32.dom /oak/stanford/groups/akundaje/marinovg/genomes/PFam/PFam32.0/Pfam-A.hmm /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures/RCADE-input-isoforms-gencode.v29/ZXDC-204.fa # Current dir: /oak/stanford/groups/akundaje/marinovg/papers/2023_ZNFs/2023-09-01-final-figures # Date: Mon Nov 6 19:16:16 2023 # [ok]